1554 215 74 51 chr9 662 1173 -117861454 - L1MD3 LINE L1 0 7995 7473 * 1668 202 18 9 chr9 1169 1496 -117861131 - L1MD3 LINE L1 -958 7037 6708 1853 98 0 0 chr9 1808 2072 -117860555 - AluSc SINE Alu 0 309 46 2226 112 3 16 chr9 3277 3589 -117859038 + AluSx SINE Alu 1 308 -4 217 250 0 0 chr9 3831 3879 -117858748 - MIR SINE MIR -2 260 213 1858 153 109 52 chr9 3881 4156 -117858471 + MSTA LTR MaLR 1 308 -120 1994 130 14 0 chr9 4156 4440 -117858187 + AluSx SINE Alu 1 288 -24 1858 153 109 52 chr9 4440 4569 -117858058 + MSTA LTR MaLR 308 428 0 2275 105 3 0 chr9 4629 4925 -117857702 + AluSg SINE Alu 2 298 -12 233 355 64 41 chr9 4998 5170 -117857457 - L2 LINE L2 -183 3089 2914 323 121 17 0 chr9 5748 5806 -117856821 + (CA)n Simple_repeat Simple_repeat 2 60 0 39 38 0 0 chr9 5806 5859 -117856768 + AT_rich Low_complexity Low_complexity 1 53 0 2217 108 3 0 chr9 5876 6164 -117856463 + AluSq SINE Alu 5 293 -20 226 222 0 0 chr9 6193 6238 -117856389 + (TATG)n Simple_repeat Simple_repeat 4 48 0 405 269 56 0 chr9 6374 6482 -117856145 - L2 LINE L2 -1 3312 3199 2189 124 3 0 chr9 6790 7089 -117855538 + AluSx SINE Alu 6 305 -7 1809 171 47 22 chr9 7486 7848 -117854779 + L1MB2 LINE L1 5801 6171 0 257 315 100 30 chr9 7863 8008 -117854619 + L1MC/D LINE L1 5614 5778 -2030 1098 219 8 60 chr9 8008 8259 -117854368 + MER8 DNA MER2_type 1 238 -1 257 315 100 30 chr9 8259 8313 -117854314 + L1MC/D LINE L1 5778 5827 -1981 2768 213 30 14 chr9 8539 8561 -117854066 + L1MB5 LINE L1 4316 4336 -1810 2257 112 3 0 chr9 8561 8856 -117853771 + AluSp SINE Alu 2 297 -16 2768 213 30 14 chr9 8856 8945 -117853682 + L1MB5 LINE L1 4336 4422 -1724 2259 113 7 3 chr9 8945 9254 -117853373 + AluSx SINE Alu 1 310 -2 2768 213 30 14 chr9 9254 9908 -117852719 + L1MB5 LINE L1 4422 5054 -1092 2267 108 3 13 chr9 9910 10225 -117852402 + AluSx SINE Alu 1 312 0 4024 179 72 11 chr9 10236 11142 -117851485 + L1MB5 LINE L1 5215 6173 -1 2496 131 6 0 chr9 11615 11974 -117850653 + MER46B DNA MER2_type 1 236 0 1971 162 13 0 chr9 12051 12359 -117850268 + AluJo SINE Alu 1 312 0 761 188 0 0 chr9 12623 12740 -117849887 - FLAM_A SINE Alu -16 117 1 30 0 0 0 chr9 13101 13131 -117849496 + AT_rich Low_complexity Low_complexity 1 30 0 310 294 34 62 chr9 15065 15242 -117847385 + L1ME LINE L1 4887 5058 -1088 2618 145 88 47 chr9 15300 15789 -117846838 - LTR22 LTR ERVK 0 509 1 299 317 14 41 chr9 15798 15913 -117846714 - L2 LINE L2 -52 3261 3149 1977 121 31 7 chr9 15913 16202 -117846425 + AluSq SINE Alu 1 296 -17 299 317 14 41 chr9 16202 16231 -117846396 - L2 LINE L2 -164 3149 3121 370 327 96 6 chr9 16260 16531 -117846096 - L2 LINE L2 -309 2963 2653 22 35 0 0 chr9 16600 16629 -117845998 + AT_rich Low_complexity Low_complexity 1 29 0 21 71 0 0 chr9 16672 16714 -117845913 + AT_rich Low_complexity Low_complexity 1 42 0 349 222 178 10 chr9 16721 16977 -117845650 + L1ME LINE L1 5281 5594 -527 280 138 92 62 chr9 17651 17716 -117844911 - MIR3 SINE MIR -17 191 125 485 257 75 70 chr9 18671 18912 -117843715 + MIR SINE MIR 18 259 -3 300 213 516 7 chr9 19137 19292 -117843335 - MIR SINE MIR -8 254 21 894 241 63 69 chr9 19453 19801 -117842826 + L1ME4a LINE L1 5490 5835 -286 535 295 106 10 chr9 19852 19927 -117842700 + MIR SINE MIR 26 92 -170 2284 122 0 0 chr9 19927 20238 -117842389 - AluSx SINE Alu -1 311 1 535 295 106 10 chr9 20238 20369 -117842258 + MIR SINE MIR 92 252 -10 250 288 182 25 chr9 21785 21983 -117840644 + MIR SINE MIR 31 259 -3 269 315 178 36 chr9 22870 23146 -117839481 - L2 LINE L2 -1229 2085 1771 21 0 0 0 chr9 23559 23580 -117839047 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chr9 24094 24137 -117838490 + AT_rich Low_complexity Low_complexity 1 43 0 28 0 0 0 chr9 24323 24351 -117838276 + AT_rich Low_complexity Low_complexity 1 28 0 4611 115 134 31 chr9 26694 28058 -117834569 + pTR5 LTR ERV1 726 2606 0 207 0 0 0 chr9 29711 29734 -117832893 + (CA)n Simple_repeat Simple_repeat 2 24 0 1055 208 33 0 chr9 30257 30440 -117832187 - MER5A DNA MER1_type 0 189 1 4988 66 194 27 chr9 30492 31200 -117831427 + LTR12 LTR ERV1 1 826 0 866 213 38 16 chr9 31833 32016 -117830611 - MER5A DNA MER1_type -1 188 2 2002 153 0 3 chr9 32030 32324 -117830303 - AluSx SINE Alu -19 293 1 1897 154 3 10 chr9 32385 32677 -117829950 - AluJb SINE Alu -22 290 1 183 237 26 92 chr9 32720 32796 -117829831 + MIR SINE MIR 56 126 -136 2237 108 10 3 chr9 33183 33488 -117829139 - AluSx SINE Alu -5 307 1 460 36 0 0 chr9 34552 34608 -117828019 + AluY SINE Alu 3 58 -252 7479 138 40 6 chr9 34714 36021 -117826606 - L1PBa LINE L1 -4274 2589 1093 2550 158 22 9 chr9 36198 36647 -117825980 + L1MB1 LINE L1 5714 6168 0 1250 140 10 24 chr9 36659 36866 -117825761 - Tigger3(Golem) DNA MER2_type -15 3014 2811 331 153 333 0 chr9 36864 36936 -117825691 - Tigger3(Golem) DNA MER2_type -2932 97 2 * 1844 175 0 7 chr9 37251 37542 -117825085 - AluJb SINE Alu -23 289 1 367 297 72 0 chr9 38882 38993 -117823634 + L1ME3 LINE L1 5965 6083 -79 2031 105 28 65 chr9 39050 39373 -117823254 + AluSx SINE Alu 1 311 -1 1006 225 114 76 chr9 39488 39990 -117822637 + MER39 LTR ERV1 1 707 0 187 227 0 23 chr9 40095 40139 -117822488 - MER5A DNA MER1_type -21 168 126 398 250 30 54 chr9 40281 40449 -117822178 + L1MC5 LINE L1 7773 7936 -25 194 270 139 70 chr9 40449 40564 -117822063 - MER5B DNA MER1_type -53 125 3 188 311 115 0 chr9 40569 40630 -117821997 - L2 LINE L2 -1 3271 3204 1623 163 20 24 chr9 43566 43860 -117818767 + AluJo SINE Alu 2 294 -18 1682 195 7 3 chr9 43888 44195 -117818432 + AluJb SINE Alu 1 308 -4 193 222 143 0 chr9 45075 45138 -117817489 + MIR SINE MIR 78 149 -113 188 67 33 0 chr9 45186 45216 -117817411 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 1843 168 10 16 chr9 45425 45735 -117816892 + AluJo SINE Alu 1 308 -4 2917 146 17 2 chr9 45879 46346 -117816281 + L1MB1 LINE L1 5695 6168 0 43739 31 21 6 chr9 46457 52521 -117810106 + L1PA3 LINE L1 1 6155 0 25 0 0 0 chr9 52539 52564 -117810063 + AT_rich Low_complexity Low_complexity 1 25 0 2259 85 10 19 chr9 53702 54009 -117808618 + AluSc SINE Alu 1 304 -5 1679 126 72 4 chr9 54573 54836 -117807791 + AluSx SINE Alu 5 285 -27 257 27 54 0 chr9 54858 54895 -117807732 + (TAAAAA)n Simple_repeat Simple_repeat 2 40 0 183 80 0 0 chr9 55387 55412 -117807215 + (A)n Simple_repeat Simple_repeat 1 25 0 185 331 145 8 chr9 56019 56143 -117806484 + L2 LINE L2 2718 2858 -456 222 297 55 78 chr9 56209 56337 -117806290 + L2 LINE L2 2948 3072 -200 193 270 206 40 chr9 56424 56550 -117806077 + L2 LINE L2 3122 3268 -4 2620 55 0 0 chr9 56925 57234 -117805393 - AluY SINE Alu -2 309 1 225 0 0 0 chr9 58246 58271 -117804356 + (A)n Simple_repeat Simple_repeat 1 25 0 587 246 181 0 chr9 60203 60418 -117802209 - MIR SINE MIR 0 262 9 21 0 0 0 chr9 61088 61109 -117801518 + AT_rich Low_complexity Low_complexity 1 21 0 801 175 0 0 chr9 62114 62240 -117800387 + FLAM_A SINE Alu 1 126 -7 1751 78 48 117 chr9 62630 62939 -117799688 + AluSx SINE Alu 1 288 -24 38 22 0 0 chr9 62939 62984 -117799643 + AT_rich Low_complexity Low_complexity 1 45 0 290 164 91 0 chr9 64989 65044 -117797583 + L2 LINE L2 3250 3309 -4 27 0 0 0 chr9 65908 65935 -117796692 + AT_rich Low_complexity Low_complexity 1 27 0 1377 113 120 21 chr9 66098 66381 -117796246 + L1MA9 LINE L1 5997 6307 -5 202 151 0 75 chr9 66470 66523 -117796104 + GA-rich Low_complexity Low_complexity 4 52 0 2355 96 3 0 chr9 67995 68296 -117794331 + AluSx SINE Alu 1 302 -10 259 86 0 0 chr9 68607 68642 -117793985 - U2 snRNA snRNA -153 35 1 809 56 47 0 chr9 68715 68822 -117793805 - L1PA10 LINE L1 -3 6165 6054 31 44 0 0 chr9 69507 69552 -117793075 + AT_rich Low_complexity Low_complexity 1 45 0 2203 115 0 28 chr9 70443 70764 -117791863 + AluSx SINE Alu 1 312 0 1233 168 28 5 chr9 72333 72547 -117790080 + MER20 DNA MER1_type 1 219 0 214 158 0 0 chr9 72581 72619 -117790008 + A-rich Low_complexity Low_complexity 5 42 0 742 251 143 72 chr9 73648 74173 -117788454 + HAL1b LINE L1 77 638 -710 * 745 234 104 57 chr9 74172 74488 -117788139 + HAL1b LINE L1 439 769 -579 12781 95 39 8 chr9 74491 75050 -117787577 + Tigger1 DNA MER2_type 388 928 -1490 2052 103 4 4 chr9 75050 75360 -117787267 - AluSg SINE Alu 0 310 1 12781 95 39 8 chr9 75360 76663 -117785964 + Tigger1 DNA MER2_type 928 2309 -109 1028 134 79 12 chr9 76663 76827 -117785800 - FRAM SINE Alu -4 172 1 691 183 0 0 chr9 76831 76946 -117785681 + Tigger1 DNA MER2_type 2304 2418 0 705 167 30 8 chr9 76950 77082 -117785545 - MER5A DNA MER1_type -23 166 32 456 123 0 0 chr9 77144 77217 -117785410 + (TG)n Simple_repeat Simple_repeat 2 74 0 1929 120 4 4 chr9 77219 77494 -117785133 - AluSx SINE Alu -37 275 1 1451 145 9 0 chr9 78346 78574 -117784053 - MER2 DNA MER2_type -115 230 1 299 189 68 14 chr9 79597 79671 -117782956 - L2 LINE L2 -4 3309 3232 2009 82 0 0 chr9 80714 80970 -117781657 + AluY SINE Alu 41 296 -15 2253 107 0 3 chr9 81906 82214 -117780413 + AluSc SINE Alu 2 308 -1 26 64 0 0 chr9 82594 82641 -117779986 + AT_rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chr9 82780 82801 -117779826 + AT_rich Low_complexity Low_complexity 1 21 0 328 183 112 52 chr9 83162 83332 -117779295 - L1ME LINE L1 -356 5806 5638 233 288 137 0 chr9 83695 83768 -117778859 - L2 LINE L2 -32 3281 3199 390 306 133 43 chr9 83988 84243 -117778384 - L2 LINE L2 -475 2839 2562 212 325 12 12 chr9 85278 85358 -117777269 - MIR SINE MIR -58 150 71 926 272 99 10 chr9 86777 87210 -117775417 - L1ME3A LINE L1 -337 5833 5357 190 106 21 106 chr9 87242 87289 -117775338 - MIR SINE MIR -136 126 84 1258 171 0 18 chr9 87938 88155 -117774472 - AluJo SINE Alu -18 294 82 2104 158 53 44 chr9 88270 88725 -117773902 + L1MB8 LINE L1 5715 6173 -5 2227 117 3 0 chr9 88984 89291 -117773336 - AluSg SINE Alu -2 308 1 743 274 58 14 chr9 89516 89724 -117772903 - MIR SINE MIR -31 231 15 585 189 25 16 chr9 89727 89849 -117772778 - MER58 DNA MER1_type -4 2416 2294 830 196 111 69 chr9 89870 90137 -117772490 + LTR54B LTR ERV1 1 288 -210 1891 143 4 0 chr9 90137 90403 -117772224 + AluSx SINE Alu 1 267 -45 830 196 111 69 chr9 90403 90497 -117772130 + LTR54B LTR ERV1 288 377 -121 433 172 0 133 chr9 90497 90625 -117772002 + MER57A-int LTR ERV1 7425 7535 -2 1000 153 55 92 chr9 90626 90937 -117771690 + MER57A LTR ERV1 1 403 0 378 213 71 50 chr9 90937 91041 -117771586 - MER58 DNA MER1_type -2276 144 38 24 0 0 0 chr9 91722 91746 -117770881 + AT_rich Low_complexity Low_complexity 1 24 0 820 206 28 22 chr9 92613 92793 -117769834 - MLT1A1 LTR MaLR 0 365 185 1700 188 0 0 chr9 92932 93214 -117769413 + AluJo SINE Alu 1 282 -30 287 161 0 16 chr9 93222 93284 -117769343 + (TA)n Simple_repeat Simple_repeat 1 61 0 317 271 48 91 chr9 93631 93750 -117768877 - L1MC4a LINE L1 -1873 5935 5827 2256 119 0 0 chr9 93750 94053 -117768574 - AluSq SINE Alu -10 303 1 317 271 48 91 chr9 94053 94143 -117768484 - L1MC4a LINE L1 -1981 5827 5735 22 35 0 0 chr9 94332 94361 -117768266 + AT_rich Low_complexity Low_complexity 1 29 0 2020 153 3 3 chr9 94646 94954 -117767673 + AluSx SINE Alu 1 308 -4 2006 108 142 16 chr9 95270 95593 -117767034 - THE1B LTR MaLR 0 364 1 11143 90 25 15 chr9 95593 97157 -117765470 - THE1B-int LTR MaLR 0 1580 1 2199 114 76 15 chr9 97157 97500 -117765127 - THE1B LTR MaLR 0 364 1 253 253 0 36 chr9 97733 97816 -117764811 + (TATATG)n Simple_repeat Simple_repeat 1 80 0 26 0 0 0 chr9 97960 97986 -117764641 + AT_rich Low_complexity Low_complexity 1 26 0 371 253 110 38 chr9 97986 98223 -117764404 + L1ME LINE L1 5546 5799 -322 2515 197 80 11 chr9 99197 99831 -117762796 - L1MC4a LINE L1 -5 7803 7126 595 302 45 5 chr9 99830 100044 -117762583 - L1ME1 LINE L1 0 6184 5947 * 186 121 35 35 chr9 100425 100483 -117762144 + T-rich Low_complexity Low_complexity 4 61 0 432 252 67 118 chr9 100632 100870 -117761757 + MER102a DNA MER1_type 96 321 -9 235 170 19 0 chr9 100872 100925 -117761702 + (TA)n Simple_repeat Simple_repeat 1 54 0 1637 243 62 51 chr9 101222 101830 -117760797 - HAL1 LINE L1 -296 2211 1597 317 270 26 12 chr9 101837 101940 -117760687 - MLT1I LTR MaLR -5 445 324 2301 106 0 0 chr9 102233 102536 -117760091 - AluSg SINE Alu -7 303 1 1015 91 8 0 chr9 102536 102668 -117759959 - AluSg SINE Alu -177 133 1 3482 262 68 63 chr9 102668 102828 -117759799 - HAL1 LINE L1 -935 1572 1414 2151 165 12 54 chr9 102828 103233 -117759394 + MLT1B LTR MaLR 3 390 0 3482 262 68 63 chr9 103233 103719 -117758908 - HAL1 LINE L1 -1093 1414 932 4926 106 26 16 chr9 103719 103772 -117758855 - L1MA3 LINE L1 -1 6304 6253 2405 74 7 0 chr9 103772 104070 -117758557 - AluSp SINE Alu -12 301 2 4926 106 26 16 chr9 104070 104759 -117757868 - L1MA3 LINE L1 -52 6253 5555 3482 262 68 63 chr9 104759 105674 -117756953 - HAL1 LINE L1 -1575 932 1 610 254 17 86 chr9 106036 106128 -117756499 - MIR SINE MIR -12 250 153 2299 84 0 0 chr9 106128 106432 -117756195 + AluSx SINE Alu 1 304 0 610 254 17 86 chr9 106432 106570 -117756057 - MIR SINE MIR -109 153 35 2964 6 0 0 chr9 106940 107257 -117755370 + AluYb8 SINE Alu 1 317 -1 548 259 41 14 chr9 107257 107404 -117755223 + L2 LINE L2 3122 3272 0 2387 187 24 2 chr9 107433 107850 -117754777 + MSTB LTR MaLR 1 426 0 2389 68 122 12 chr9 107858 108194 -117754433 - THE1C LTR MaLR -2 373 1 1097 230 149 9 chr9 109003 109325 -117753302 + L1ME3A LINE L1 5781 6147 -23 1775 151 3 40 chr9 110570 110894 -117751733 - AluJb SINE Alu 0 312 1 270 311 150 36 chr9 111260 111427 -117751200 + MER5A DNA MER1_type 4 189 0 2710 39 0 3 chr9 112041 112353 -117750274 + AluY SINE Alu 1 311 0 25 0 0 0 chr9 112644 112669 -117749958 + AT_rich Low_complexity Low_complexity 1 25 0 421 170 0 85 chr9 112732 112826 -117749801 - L1MC4 LINE L1 -159 7883 7798 2508 189 9 5 chr9 112838 113271 -117749356 - MER41D LTR ERV1 -7 550 116 24 32 0 0 chr9 113370 113401 -117749226 + AT_rich Low_complexity Low_complexity 1 31 0 711 274 112 70 chr9 113465 113939 -117748688 + MLT1L LTR MaLR 122 615 0 648 281 87 5 chr9 113979 114175 -117748452 - MIR SINE MIR -49 213 2 712 292 72 8 chr9 114379 114615 -117748012 + MIR SINE MIR 2 252 -10 622 301 104 20 chr9 114623 114922 -117747705 - MLT1K LTR MaLR -150 438 115 266 288 104 40 chr9 116471 116596 -117746031 + L2 LINE L2 3180 3312 -1 25 31 0 0 chr9 116758 116790 -117745837 + AT_rich Low_complexity Low_complexity 1 32 0 2403 80 3 0 chr9 116823 117124 -117745503 - AluSp SINE Alu -11 302 1 896 223 129 41 chr9 117485 117803 -117744824 - L2 LINE L2 0 3313 2968 259 315 83 19 chr9 118535 118643 -117743984 - MIR SINE MIR -64 144 30 517 244 93 52 chr9 118843 119015 -117743612 + MIR SINE MIR 63 241 -21 1286 181 49 61 chr9 120184 120510 -117742117 - MER33 DNA MER1_type -2 322 1 2345 51 10 3 chr9 120540 120834 -117741793 - AluSc SINE Alu -13 296 1 1714 153 32 23 chr9 123056 123364 -117739263 + AluJo SINE Alu 1 311 -1 587 283 34 34 chr9 123669 123874 -117738753 + MIR SINE MIR 2 206 -56 542 207 18 0 chr9 123874 123985 -117738642 + Charlie5 DNA MER1_type 2364 2476 -136 479 257 102 58 chr9 124503 124729 -117737898 - MIR SINE MIR -9 253 18 925 261 56 8 chr9 125625 125874 -117736753 - MIR SINE MIR 0 262 2 259 289 48 0 chr9 125897 125980 -117736647 - MIR SINE MIR 0 262 176 2187 126 3 3 chr9 125996 126306 -117736321 + AluSx SINE Alu 1 310 -2 1989 157 0 0 chr9 126423 126722 -117735905 + AluJo SINE Alu 1 299 -13 1784 79 9 0 chr9 127519 127748 -117734879 - AluSg/x SINE Alu 0 312 82 1520 100 27 9 chr9 128118 128338 -117734289 - MER2 DNA MER2_type 0 345 122 2220 97 0 39 chr9 128338 128646 -117733981 + AluSx SINE Alu 1 296 -16 610 286 43 78 chr9 128687 128780 -117733847 - L1ME LINE L1 -298 5823 5728 1768 158 0 29 chr9 128780 129090 -117733537 + AluJo SINE Alu 1 301 -11 610 286 43 78 chr9 129090 129370 -117733257 - L1ME LINE L1 -393 5728 5463 205 355 56 19 chr9 130115 130222 -117732405 - L2 LINE L2 0 3272 3162 264 278 70 35 chr9 130293 130408 -117732219 - MARNA DNA Mariner -91 495 377 384 321 62 33 chr9 130793 131033 -117731594 - MARNA DNA Mariner -321 265 19 1253 280 159 25 chr9 132373 132854 -117729773 - L2 LINE L2 0 3313 2898 2616 100 43 6 chr9 132854 133205 -117729422 - THE1B LTR MaLR 0 364 1 1253 280 159 25 chr9 133205 133666 -117728961 - L2 LINE L2 -415 2898 2228 24 0 0 0 chr9 133760 133784 -117728843 + AT_rich Low_complexity Low_complexity 1 24 0 349 208 38 28 chr9 133802 133908 -117728719 + L1ME4a LINE L1 5942 6048 -73 652 286 156 4 chr9 134208 134439 -117728188 + MLT1I LTR MaLR 137 402 -7 392 313 43 24 chr9 134763 134974 -117727653 - L2 LINE L2 -1369 1945 1731 28 0 0 0 chr9 135253 135281 -117727346 + AT_rich Low_complexity Low_complexity 1 28 0 663 226 14 20 chr9 135375 135521 -117727106 + MLT1C LTR MaLR 321 465 -2 * 1384 228 49 62 chr9 135521 136003 -117726624 - MLT1H LTR MaLR -28 521 1 196 358 74 12 chr9 136187 136268 -117726359 + L3b LINE CR1 1478 1563 -20 321 211 22 56 chr9 136592 136682 -117725945 - MLT1J LTR MaLR 0 511 425 26 0 0 0 chr9 136686 136712 -117725915 + AT_rich Low_complexity Low_complexity 1 26 0 45335 36 2 1 chr9 136712 142859 -117719768 - L1PA4 LINE L1 0 6155 2 663 320 50 60 chr9 142862 143299 -117719328 - MLT1J LTR MaLR -74 437 5 931 275 71 75 chr9 143454 143905 -117718722 - MLT1J2 LTR MaLR -1 449 1 2148 141 0 0 chr9 144181 144487 -117718140 + AluJb SINE Alu 1 306 -6 3564 152 37 19 chr9 145377 145969 -117716658 - MER6A DNA MER2_type -2 603 1 233 236 0 18 chr9 146001 146056 -117716571 + (CA)n Simple_repeat Simple_repeat 2 55 0 704 275 101 9 chr9 146550 146877 -117715750 - L1ME4a LINE L1 -150 5971 5615 553 210 114 54 chr9 147482 147649 -117714978 - L2 LINE L2 0 3313 3137 244 257 100 0 chr9 147647 147717 -117714910 + MIR SINE MIR 116 192 -70 * 4574 122 18 1 chr9 147902 148580 -117714047 - L1MA5A LINE L1 -3 6294 5606 372 219 0 0 chr9 148657 148721 -117713906 - FLAM_A SINE Alu -69 64 1 297 274 88 39 chr9 148893 148995 -117713632 + MIR3 SINE MIR 82 188 -20 30 0 0 0 chr9 149283 149313 -117713314 + AT_rich Low_complexity Low_complexity 1 30 0 314 306 209 29 chr9 149317 149523 -117713104 - MIR SINE MIR -12 250 8 2569 42 0 13 chr9 150712 151018 -117711609 + AluY SINE Alu 2 303 -8 340 236 165 16 chr9 151021 151085 -117711542 + MER112 DNA MER1_type 4 57 -203 213 39 0 0 chr9 151085 151111 -117711516 + (CA)n Simple_repeat Simple_repeat 1 26 0 340 236 165 16 chr9 151111 151228 -117711399 + MER112 DNA MER1_type 57 212 -48 323 296 80 65 chr9 151277 151476 -117711151 + L2 LINE L2 3112 3313 0 2076 119 0 10 chr9 151995 152316 -117710311 - AluSx SINE Alu 0 312 1 1825 161 10 3 chr9 152746 153038 -117709589 + AluSx SINE Alu 1 294 -18 1511 154 60 39 chr9 153047 153332 -117709295 + AluJo SINE Alu 1 291 -21 746 191 0 0 chr9 153583 153721 -117708906 - FLAM_A SINE Alu 0 140 3 2235 60 0 14 chr9 154339 154620 -117708007 - AluY SINE Alu -9 302 26 725 189 0 9 chr9 155219 155449 -117707178 + CT-rich Low_complexity Low_complexity 1 227 0 2082 105 0 52 chr9 156411 156736 -117705891 - AluSx SINE Alu -4 308 1 187 315 39 85 chr9 157441 157746 -117704881 - L2 LINE L2 -1218 2096 1806 551 191 29 0 chr9 158460 158565 -117704062 + MIR SINE MIR 89 196 -66 2269 112 0 3 chr9 158776 159081 -117703546 - AluSg SINE Alu -6 304 1 275 276 17 0 chr9 159160 159227 -117703400 - MIR SINE MIR -89 119 51 2248 83 21 3 chr9 159329 159619 -117703008 + AluSx SINE Alu 1 295 -17 409 272 61 50 chr9 161634 161814 -117700813 + MER5A DNA MER1_type 8 189 0 2456 88 0 0 chr9 162194 162502 -117700125 + AluSx SINE Alu 1 308 -4 285 245 158 50 chr9 163155 163294 -117699333 + MIR SINE MIR 36 189 -73 399 246 146 9 chr9 163593 163703 -117698924 + L2 LINE L2 3189 3313 0 967 115 23 152 chr9 164252 164320 -117698307 - MER5A DNA MER1_type 0 189 114 2351 88 3 0 chr9 164320 164625 -117698002 - AluSc SINE Alu -3 306 1 967 115 23 152 chr9 164625 164773 -117697854 - MER5A DNA MER1_type -75 114 1 2417 95 0 0 chr9 165401 165706 -117696921 - AluSx SINE Alu -7 305 1 1735 164 24 7 chr9 165833 166125 -117696502 + AluJo SINE Alu 1 297 -15 420 272 239 9 chr9 166260 166473 -117696154 + MIR SINE MIR 1 262 0 421 271 51 0 chr9 166929 167047 -117695580 + L2 LINE L2 2234 2357 -957 681 238 157 20 chr9 167302 167606 -117695021 + L1MC4a LINE L1 5531 5829 -341 460 213 28 0 chr9 167605 167713 -117694914 + L1ME2 LINE L1 5751 5861 -303 * 811 61 0 0 chr9 167816 167915 -117694712 + AluY SINE Alu 204 302 -9 22 0 0 0 chr9 168118 168140 -117694487 + AT_rich Low_complexity Low_complexity 1 22 0 1410 251 80 20 chr9 168207 168793 -117693834 - L1MEc LINE L1 -3288 2927 2307 386 0 0 39 chr9 168794 168845 -117693782 + (GAAA)n Simple_repeat Simple_repeat 2 50 0 370 157 0 0 chr9 168848 168918 -117693709 + L1PA15 LINE L1 6096 6165 0 2161 206 140 27 chr9 168931 169517 -117693110 + L1ME1 LINE L1 5379 6030 -136 487 196 47 0 chr9 169517 169624 -117693003 + L1MA10 LINE L1 6216 6327 -7 287 290 103 30 chr9 169631 169733 -117692894 - L1MEc LINE L1 -4039 2357 2264 2214 113 0 0 chr9 169733 170033 -117692594 + AluSx SINE Alu 1 300 -12 287 290 103 30 chr9 170033 170863 -117691764 - L1MEc LINE L1 -4132 2264 1248 275 287 0 0 chr9 171407 171494 -117691133 + (TA)n Simple_repeat Simple_repeat 2 88 0 2393 88 0 0 chr9 171735 172040 -117690587 - AluSq SINE Alu -8 305 1 344 364 8 8 chr9 172620 172752 -117689875 - MIR3 SINE MIR -19 189 58 279 0 0 0 chr9 173173 173204 -117689423 + (TGAA)n Simple_repeat Simple_repeat 2 32 0 466 290 45 28 chr9 173233 173409 -117689218 - MER5A DNA MER1_type 0 189 11 2199 130 0 3 chr9 174007 174314 -117688313 - AluJb SINE Alu -6 306 1 408 312 58 56 chr9 174482 174982 -117687645 - L1ME4a LINE L1 -238 5883 5385 4037 169 28 27 chr9 175870 176361 -117686266 - L1MB8 LINE L1 -14 6164 5670 2260 115 0 7 chr9 176361 176666 -117685961 - AluSx SINE Alu -9 303 1 4037 169 28 27 chr9 176666 176924 -117685703 - L1MB8 LINE L1 -508 5670 5414 269 259 0 12 chr9 178922 178946 -117683681 - L1MA10 LINE L1 0 6334 6311 673 264 48 39 chr9 178946 179177 -117683450 - L1ME1 LINE L1 -14 6152 5920 1958 126 10 14 chr9 179199 179492 -117683135 - AluJo SINE Alu -20 292 1 29 47 0 0 chr9 180222 180265 -117682362 + AT_rich Low_complexity Low_complexity 1 43 0 2145 102 3 58 chr9 180489 180814 -117681813 - AluSp SINE Alu -6 307 1 264 122 0 0 chr9 181271 181312 -117681315 + (T)n Simple_repeat Simple_repeat 1 41 0 424 300 40 27 chr9 181819 181969 -117680658 + MIR SINE MIR 20 171 -91 523 197 311 0 chr9 182237 182369 -117680258 + MER5B DNA MER1_type 5 177 -1 25 0 0 0 chr9 182381 182406 -117680221 + AT_rich Low_complexity Low_complexity 1 25 0 2259 97 0 0 chr9 182409 182697 -117679930 - AluSx SINE Alu -24 288 1 2123 127 0 0 chr9 182700 182999 -117679628 - AluSx SINE Alu -13 299 1 1924 138 7 7 chr9 183611 183917 -117678710 - AluJb SINE Alu 0 306 1 1799 153 0 32 chr9 183941 184249 -117678378 + AluJo SINE Alu 1 298 -14 349 20 40 0 chr9 184249 184299 -117678328 + (GAGAA)n Simple_repeat Simple_repeat 1 52 0 183 204 0 0 chr9 184349 184393 -117678234 + GA-rich Low_complexity Low_complexity 3 46 0 2233 283 114 20 chr9 185188 186276 -117676351 - L2 LINE L2 0 3313 2120 301 260 68 0 chr9 186315 186388 -117676239 + MER81 DNA DNA 1 78 -36 438 193 175 0 chr9 186412 186526 -117676101 - L2 LINE L2 -1297 2017 1884 270 179 36 0 chr9 186706 186762 -117675865 + MIR SINE MIR 84 141 -121 181 143 163 20 chr9 187133 187182 -117675445 + L2 LINE L2 3216 3271 -1 409 242 80 106 chr9 187189 187528 -117675099 - MLT2C1 LTR ERVL -1 396 67 * 664 179 23 37 chr9 187383 187566 -117675061 - MLT1E1 LTR MaLR -376 278 46 * 717 207 14 7 chr9 187565 187710 -117674917 - MLT2F LTR ERVL -517 146 1 2029 128 21 0 chr9 187780 188069 -117674558 + AluSx SINE Alu 1 295 -17 270 143 0 0 chr9 188426 188475 -117674152 + (TG)n Simple_repeat Simple_repeat 2 50 0 191 254 110 85 chr9 188973 189091 -117673536 + L2 LINE L2 3187 3307 -6 1476 181 26 32 chr9 189217 189526 -117673101 - AluJo SINE Alu 0 312 6 476 244 122 0 chr9 189932 190055 -117672572 + MIR SINE MIR 11 148 -114 1868 155 0 24 chr9 190055 190209 -117672418 + MER46B DNA MER2_type 1 19 -2712 2216 157 23 0 chr9 190209 190560 -117672067 - L1PB4 LINE L1 0 6156 5798 1868 155 0 24 chr9 190560 190734 -117671893 + MER46B DNA MER2_type 19 196 -40 307 235 133 10 chr9 190752 190850 -117671777 + MIR SINE MIR 148 257 -5 4138 83 13 0 chr9 191382 191913 -117670714 + L1PA14 LINE L1 5624 6161 0 336 228 238 0 chr9 193705 193806 -117668821 + MIR SINE MIR 16 140 -122 233 200 0 0 chr9 193905 193945 -117668682 - MIR SINE MIR -6 256 217 796 191 0 22 chr9 194701 194837 -117667790 + FLAM_A SINE Alu 1 133 0 773 308 76 0 chr9 195129 195366 -117667261 + MIR SINE MIR 6 260 -2 733 276 43 30 chr9 195377 195609 -117667018 - MIR SINE MIR -22 240 6 23 0 0 0 chr9 196416 196439 -117666188 + AT_rich Low_complexity Low_complexity 1 23 0 2072 143 56 30 chr9 196444 196941 -117665686 - L1MC2 LINE L1 0 6344 5752 1482 123 45 18 chr9 196978 197198 -117665429 - MER30 DNA MER1_type 0 230 5 580 278 88 10 chr9 198265 198571 -117664056 - L1ME4a LINE L1 -202 5919 5590 1887 155 3 26 chr9 198590 198899 -117663728 + AluJo SINE Alu 2 303 -9 2374 71 6 52 chr9 198899 199222 -117663405 + AluSp SINE Alu 1 309 -4 346 274 110 51 chr9 199338 199630 -117662997 - L1ME4a LINE L1 -748 5398 5090 183 42 0 0 chr9 200252 200276 -117662351 + (GGAGAA)n Simple_repeat Simple_repeat 3 26 0 398 315 144 27 chr9 200956 201254 -117661373 - L1ME LINE L1 -311 5810 5478 1767 193 34 70 chr9 201379 201686 -117660941 + L1ME1 LINE L1 5594 5880 -286 2418 102 0 0 chr9 201686 201990 -117660637 + AluSx SINE Alu 1 304 -8 1767 193 34 70 chr9 201990 202154 -117660473 + L1ME1 LINE L1 5880 6048 -118 230 243 71 0 chr9 203905 203975 -117658652 + GA-rich Low_complexity Low_complexity 2 76 0 470 322 38 17 chr9 203982 204178 -117658449 - MIR SINE MIR -59 203 3 2174 132 0 0 chr9 204951 205261 -117657366 + AluSx SINE Alu 1 310 -2 244 237 103 52 chr9 205300 205397 -117657230 - MIR3 SINE MIR -10 198 97 324 0 0 0 chr9 205427 205463 -117657164 + (TG)n Simple_repeat Simple_repeat 2 37 0 1370 142 0 5 chr9 206167 206371 -117656256 - AluJb SINE Alu -109 203 1 2413 64 7 3 chr9 206548 206844 -117655783 + AluY SINE Alu 1 297 -14 10681 213 63 13 chr9 207245 209655 -117652972 + L1PA16 LINE L1 3078 5566 -600 1746 152 6 108 chr9 209655 209990 -117652637 + AluJo SINE Alu 1 301 -1 10681 213 63 13 chr9 209990 210624 -117652003 + L1PA16 LINE L1 5566 6166 0 734 303 49 12 chr9 211825 212069 -117650558 + MIR SINE MIR 10 262 0 2494 62 0 10 chr9 212085 212393 -117650234 - AluY SINE Alu -6 305 1 725 188 17 15 chr9 212597 212870 -117649757 + L1MB3 LINE L1 5657 6123 -60 199 267 67 0 chr9 212875 212935 -117649692 - MIR SINE MIR -118 144 81 389 229 59 20 chr9 213264 213417 -117649210 - LTR33A LTR ERVL -25 498 340 843 190 49 33 chr9 213424 213608 -117649019 - MER5A DNA MER1_type 0 189 3 773 236 170 66 chr9 213614 214058 -117648569 - LTR50 LTR ERVL -210 585 17 2541 77 6 0 chr9 214155 214466 -117648161 - AluSp SINE Alu 0 313 1 4660 115 27 3 chr9 214487 215156 -117647471 + L1MA5 LINE L1 5609 6293 -7 529 307 63 31 chr9 215361 215470 -117647157 - L1ME4a LINE L1 -179 5942 5838 2225 98 0 7 chr9 215470 215765 -117646862 - AluSc SINE Alu -16 293 1 529 307 63 31 chr9 215765 216004 -117646623 - L1ME4a LINE L1 -283 5838 5583 264 150 0 0 chr9 216741 216781 -117645846 - Alu SINE Alu -19 283 244 2258 105 3 0 chr9 216794 217089 -117645538 + AluSq SINE Alu 1 296 -17 2199 86 0 7 chr9 217278 217556 -117645071 - AluSq SINE Alu -24 289 14 589 218 58 13 chr9 217625 217781 -117644846 + MLT1E LTR MaLR 1 163 -430 1952 135 7 3 chr9 217812 218108 -117644519 + AluSx SINE Alu 1 297 -15 1222 186 4 52 chr9 218112 218360 -117644267 - AluJo SINE Alu -76 236 1 1699 158 63 26 chr9 220315 220664 -117641963 + L1MA7 LINE L1 5880 6241 -50 525 141 10 10 chr9 220659 220758 -117641869 + L1MA7 LINE L1 6192 6290 -1 * 266 160 64 85 chr9 221865 221959 -117640668 - MLT1K LTR MaLR -16 572 481 1407 205 45 40 chr9 222166 222600 -117640027 + L1MC5 LINE L1 7499 7917 -44 791 274 45 0 chr9 224233 224434 -117638193 - MER63A DNA MER1_type 0 210 1 398 304 142 28 chr9 224489 224736 -117637891 - Charlie8 DNA MER1_type -2141 276 2 314 227 23 34 chr9 224867 224955 -117637672 - Charlie7 DNA MER1_type -2500 112 26 183 333 32 11 chr9 225206 225299 -117637328 + MIR3 SINE MIR 108 202 -6 1691 156 53 11 chr9 225823 226105 -117636522 + AluJo SINE Alu 1 294 -18 324 285 27 97 chr9 226717 226903 -117635724 - MER5A DNA MER1_type -11 178 6 460 344 81 9 chr9 229234 229455 -117633172 + MIR SINE MIR 20 256 -6 2128 136 0 0 chr9 229619 229921 -117632706 + AluSq SINE Alu 1 302 -11 2984 114 21 44 chr9 229993 230027 -117632600 - L1MB3 LINE L1 -11 6172 6139 2380 93 3 0 chr9 230027 230329 -117632298 - AluSg SINE Alu -7 303 1 2984 114 21 44 chr9 230329 230776 -117631851 - L1MB3 LINE L1 -44 6139 5702 327 328 39 56 chr9 230779 230959 -117631668 - MIR SINE MIR -39 223 47 2916 105 36 27 chr9 231637 232075 -117630552 - L1PB3 LINE L1 0 6154 5713 682 260 136 41 chr9 233174 233225 -117629402 - MLT1J1 LTR MaLR -10 440 395 1345 128 11 0 chr9 233225 233412 -117629215 - MER5A DNA MER1_type 0 189 1 682 260 136 41 chr9 233412 233734 -117628893 - MLT1J1 LTR MaLR -55 395 64 1885 155 3 13 chr9 234201 234505 -117628122 - AluJb SINE Alu -11 301 1 472 297 34 7 chr9 235162 235310 -117627317 + MIR SINE MIR 29 180 -82 2270 109 3 6 chr9 235747 236060 -117626567 - AluSq SINE Alu -1 312 1 205 233 233 58 chr9 237283 237455 -117625172 + MIR SINE MIR 49 250 -12 221 240 180 80 chr9 237940 238040 -117624587 + L2 LINE L2 3153 3262 -10 535 239 127 29 chr9 238860 239174 -117623453 - L1ME4a LINE L1 -6 6115 5771 1778 184 3 3 chr9 239457 239766 -117622861 - AluJo SINE Alu -3 309 1 2413 81 0 0 chr9 240128 240424 -117622203 + AluY SINE Alu 1 296 -15 2208 109 3 3 chr9 241612 241914 -117620713 + AluSx SINE Alu 5 306 -6 474 283 17 52 chr9 243617 243640 -117618987 + MIR SINE MIR 93 115 -147 2623 144 60 0 chr9 243640 244042 -117618585 - MSTC LTR MaLR -2 426 1 474 283 17 52 chr9 244042 244191 -117618436 + MIR SINE MIR 115 259 -3 1162 172 8 64 chr9 244481 244682 -117617945 + L1MB2 LINE L1 5933 6119 -52 2327 94 7 0 chr9 244682 244980 -117617647 + AluSx SINE Alu 1 300 -12 1162 172 8 64 chr9 244980 245028 -117617599 + L1MB2 LINE L1 6119 6168 -3 182 270 160 50 chr9 245092 245192 -117617435 + L3 LINE CR1 1098 1208 -369 232 242 129 73 chr9 245212 245336 -117617291 + MIR SINE MIR 73 203 -59 348 351 179 0 chr9 245448 245616 -117617011 + L3 LINE CR1 1272 1469 -108 2302 94 0 3 chr9 246325 246622 -117616005 - AluSc SINE Alu -13 296 1 206 304 0 14 chr9 246685 246754 -117615873 - MIR3 SINE MIR -6 202 135 1998 148 3 0 chr9 247148 247452 -117615175 + AluSx SINE Alu 1 305 -7 735 229 71 0 chr9 247863 248046 -117614581 + MER3 DNA MER1_type 9 204 -5 3879 108 19 23 chr9 248514 249043 -117613584 + MER1A DNA MER1_type 1 527 0 234 105 0 0 chr9 249089 249127 -117613500 + (T)n Simple_repeat Simple_repeat 1 38 0 2318 106 0 0 chr9 249270 249572 -117613055 - AluSg SINE Alu -4 306 5 449 304 130 20 chr9 249578 249877 -117612750 - L1ME3 LINE L1 -337 5825 5494 258 225 8 150 chr9 249904 250024 -117612603 - MIR3 SINE MIR -28 180 78 1285 199 68 14 chr9 250026 250307 -117612320 + AluJo SINE Alu 1 296 -16 2081 111 3 24 chr9 251574 251871 -117610756 + AluSq SINE Alu 1 291 -22 234 0 0 0 chr9 252578 252605 -117610022 - MADE1 DNA Mariner 0 80 54 1917 141 7 7 chr9 254032 254331 -117608296 + AluJb SINE Alu 3 301 -11 1523 193 4 7 chr9 256917 257192 -117605435 - AluJo SINE Alu -10 302 29 2244 90 7 3 chr9 259270 259558 -117603069 + AluSg SINE Alu 1 289 -21 248 258 32 0 chr9 259805 259867 -117602760 - L2 LINE L2 0 3272 3209 1962 112 0 0 chr9 260858 261118 -117601509 + AluSq SINE Alu 1 260 -53 1260 215 72 99 chr9 261274 261828 -117600799 - MLT1F1 LTR MaLR 0 567 29 2321 104 3 3 chr9 262001 262310 -117600317 - AluSc SINE Alu 0 309 1 2507 69 0 7 chr9 263055 263361 -117599266 + AluY SINE Alu 1 304 -7 234 91 0 0 chr9 264260 264293 -117598334 + (TC)n Simple_repeat Simple_repeat 2 34 0 1820 128 21 52 chr9 264879 265198 -117597429 - AluJo SINE Alu 0 314 5 2303 122 0 0 chr9 265375 265687 -117596940 + AluSx SINE Alu 1 312 0 276 242 333 0 chr9 265790 265910 -117596717 - MER5A DNA MER1_type 0 189 30 410 276 35 8 chr9 266071 266226 -117596401 + MIR SINE MIR 8 169 -62 189 0 0 0 chr9 266612 266633 -117595994 + (A)n Simple_repeat Simple_repeat 1 21 0 2315 112 0 10 chr9 266842 267154 -117595473 + AluSx SINE Alu 1 309 -3 1551 188 3 30 chr9 267686 267984 -117594643 + AluJo SINE Alu 1 290 -22 339 255 0 21 chr9 270431 270525 -117592102 + MIR3 SINE MIR 95 186 -22 412 239 99 59 chr9 270922 271144 -117591483 + L1ME4a LINE L1 5685 5915 -206 1903 168 0 13 chr9 271159 271468 -117591159 + AluJb SINE Alu 1 305 -7 305 329 264 3 chr9 271718 272099 -117590528 - L2 LINE L2 -223 3049 2575 315 268 12 0 chr9 272474 272556 -117590071 - MIR SINE MIR -149 113 31 849 242 19 53 chr9 273753 274017 -117588610 + MIR SINE MIR 8 262 0 530 183 23 53 chr9 274065 274196 -117588431 - L2 LINE L2 0 3313 3187 30 45 0 0 chr9 275447 275491 -117587136 + AT_rich Low_complexity Low_complexity 1 44 0 2167 96 55 0 chr9 275616 275907 -117586720 - AluSq SINE Alu 0 313 7 445 279 85 42 chr9 276093 276258 -117586369 + MER91A DNA MER1_type 1 172 -24 1943 148 7 3 chr9 276613 276910 -117585717 - AluJb SINE Alu -14 298 1 664 154 36 0 chr9 279599 279709 -117582918 + AluSq SINE Alu 41 154 -159 2156 79 0 8 chr9 279710 280001 -117582626 + AluSx SINE Alu 21 309 0 878 203 89 54 chr9 280092 280408 -117582219 - L1MC5 LINE L1 -182 7779 7453 380 278 71 35 chr9 280764 280933 -117581694 + MIR SINE MIR 34 208 -54 1296 164 80 42 chr9 281032 281261 -117581366 + MER33 DNA MER1_type 1 247 -2338 1996 154 0 13 chr9 281261 281573 -117581054 - AluJo SINE Alu -4 308 1 1296 164 80 42 chr9 281573 281654 -117580973 + MER33 DNA MER1_type 247 323 -1 596 312 63 28 chr9 281671 281988 -117580639 - MER102b DNA MER1_type -8 333 6 244 261 22 80 chr9 282381 282519 -117580108 - MIR3 SINE MIR -3 205 76 2055 137 3 0 chr9 282522 282807 -117579820 + AluJb SINE Alu 1 286 -26 720 183 92 0 chr9 284444 284586 -117578041 - L1MB7 LINE L1 -44 6140 5986 343 285 51 0 chr9 285762 285899 -117576728 - L2 LINE L2 -212 3060 2917 240 192 51 51 chr9 286198 286276 -117576351 - MER5A DNA MER1_type -98 91 14 406 249 92 43 chr9 286814 287197 -117575430 + AluSx SINE Alu 2 197 -105 427 256 110 42 chr9 287197 287628 -117574999 + AluSx SINE Alu 2 204 -98 1795 164 0 11 chr9 287628 287908 -117574719 + AluJo SINE Alu 6 282 -30 225 0 0 0 chr9 287911 287936 -117574691 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2044 143 0 13 chr9 288481 288781 -117573846 + AluJb SINE Alu 1 296 -16 597 254 54 22 chr9 288934 289119 -117573508 + Charlie8 DNA MER1_type 75 265 -2152 2365 93 3 19 chr9 289925 290060 -117572567 + AluSq SINE Alu 1 137 -176 2242 108 10 0 chr9 290060 290356 -117572271 + AluSq SINE Alu 1 299 -14 2365 93 3 19 chr9 290356 290533 -117572094 + AluSq SINE Alu 137 308 -5 1677 185 83 0 chr9 290635 290998 -117571629 - L1MC3 LINE L1 0 7785 7393 318 169 0 101 chr9 291005 291094 -117571533 - L1MB7 LINE L1 -19 6165 6086 229 330 10 0 chr9 291272 291372 -117571255 + MIR SINE MIR 35 135 -73 2513 68 0 0 chr9 291442 291750 -117570877 + AluY SINE Alu 1 308 -3 226 241 0 0 chr9 291793 291847 -117570780 + MER116 DNA Mariner 2 55 -25 785 173 20 0 chr9 291852 292002 -117570625 - MER63B DNA MER1_type 0 434 282 1042 188 73 0 chr9 292002 292220 -117570407 + L1MD3 LINE L1 7730 7963 -32 956 235 91 30 chr9 292222 292520 -117570107 - MER63B DNA MER1_type -118 318 3 24 53 0 0 chr9 292618 292656 -117569971 + AT_rich Low_complexity Low_complexity 1 38 0 1056 140 62 6 chr9 293427 293606 -117569021 - MER5A DNA MER1_type 0 189 1 2271 112 3 0 chr9 293969 294273 -117568354 + AluSx SINE Alu 1 305 -7 2127 127 3 13 chr9 295361 295661 -117566966 - AluSx SINE Alu -15 297 1 413 333 0 0 chr9 295909 296023 -117566604 + MER81 DNA DNA 1 114 0 357 256 23 38 chr9 296319 296372 -117566255 - MIR3 SINE MIR -2 206 154 647 185 204 0 chr9 296372 296400 -117566227 + MER5A DNA MER1_type 1 22 -167 261 0 0 0 chr9 296400 296429 -117566198 + (CAG)n Simple_repeat Simple_repeat 1 29 0 647 185 204 0 chr9 296429 296541 -117566086 + MER5A DNA MER1_type 22 178 -11 1654 134 37 50 chr9 296541 296840 -117565787 + AluJb SINE Alu 1 295 -17 647 185 204 0 chr9 296840 296855 -117565772 + MER5A DNA MER1_type 178 189 0 357 256 23 38 chr9 296855 296934 -117565693 - MIR3 SINE MIR -54 154 76 686 302 122 26 chr9 297456 298256 -117564371 + L2 LINE L2 2432 3304 -9 207 0 0 0 chr9 298629 298652 -117563975 + (T)n Simple_repeat Simple_repeat 1 23 0 2203 121 3 0 chr9 298664 298961 -117563666 + AluSq SINE Alu 1 298 -15 1283 152 5 0 chr9 299725 299922 -117562705 + AluJo SINE Alu 114 311 -1 376 191 35 71 chr9 300157 300298 -117562329 - MIR SINE MIR 0 262 127 706 320 39 48 chr9 300596 301111 -117561516 - LTR33 LTR ERVL -4 517 8 315 0 0 0 chr9 302339 302374 -117560253 + (TAG)n Simple_repeat Simple_repeat 1 35 0 230 179 0 15 chr9 302664 302731 -117559896 + (TA)n Simple_repeat Simple_repeat 2 67 0 298 147 0 44 chr9 303747 303815 -117558812 + L1ME4a LINE L1 6056 6120 -1 1597 128 4 32 chr9 303930 304179 -117558448 + AluSx SINE Alu 62 303 -9 1150 222 15 11 chr9 304194 304214 -117558413 + L1MC4 LINE L1 7775 7793 -249 2117 123 0 3 chr9 304214 304506 -117558121 + AluSx SINE Alu 1 291 -21 1150 222 15 11 chr9 304506 304751 -117557876 + L1MC4 LINE L1 7793 8041 -1 255 335 49 18 chr9 304856 305020 -117557607 - MIR SINE MIR -40 222 54 23 33 0 0 chr9 305343 305373 -117557254 + AT_rich Low_complexity Low_complexity 1 30 0 358 205 134 0 chr9 305647 305759 -117556868 + L1ME4a LINE L1 5879 6005 -116 1113 156 0 8 chr9 306698 307001 -117555626 + (CCA)n Simple_repeat Simple_repeat 1 477 0 933 140 0 0 chr9 307001 307179 -117555448 + (CCA)n Simple_repeat Simple_repeat 2 179 0 1092 106 0 0 chr9 307196 307375 -117555252 + (CCA)n Simple_repeat Simple_repeat 1 179 0 1113 117 0 0 chr9 307536 307901 -117554726 + (CCA)n Simple_repeat Simple_repeat 1 365 0 226 354 13 0 chr9 308097 308176 -117554451 + MIR SINE MIR 66 145 -63 1873 219 54 46 chr9 308177 308717 -117553910 - LTR55 LTR ERV -4 544 1 262 167 0 0 chr9 308766 308808 -117553819 + 5S rRNA rRNA 1 42 -79 286 290 9 19 chr9 309160 309267 -117553360 + CT-rich Low_complexity Low_complexity 2 107 0 328 333 57 0 chr9 309290 309413 -117553214 + MIR3 SINE MIR 31 160 -48 2128 122 3 0 chr9 309867 310161 -117552466 - AluSx SINE Alu -17 295 1 1964 110 15 15 chr9 310574 310831 -117551796 + AluSx SINE Alu 21 277 -35 315 0 0 0 chr9 310831 310866 -117551761 + (TC)n Simple_repeat Simple_repeat 2 36 0 * 870 83 0 0 chr9 310865 310985 -117551642 + (TA)n Simple_repeat Simple_repeat 1 120 0 1964 110 15 15 chr9 310866 310999 -117551628 + AluSx SINE Alu 276 292 -20 301 205 70 123 chr9 312378 312549 -117550078 + MER103 DNA DNA 3 164 -2 1803 159 23 7 chr9 313184 313486 -117549141 + AluSx SINE Alu 1 307 -5 219 292 22 0 chr9 313707 313796 -117548831 + MIR SINE MIR 81 171 -91 398 174 61 98 chr9 314718 314850 -117547777 - L2 LINE L2 0 3313 3187 345 140 0 0 chr9 315834 315891 -117546736 + (CA)n Simple_repeat Simple_repeat 2 58 0 21 57 0 0 chr9 316511 316546 -117546081 + AT_rich Low_complexity Low_complexity 1 35 0 3550 43 86 0 chr9 316554 316975 -117545652 - L1PA5 LINE L1 0 6154 5698 491 36 0 0 chr9 316975 317031 -117545596 + L1PA5 LINE L1 5654 5709 -445 544 256 145 0 chr9 317099 317306 -117545321 - L1ME3 LINE L1 -2 6160 5924 569 251 74 39 chr9 317307 317538 -117545089 - L1ME3 LINE L1 -279 5883 5645 8724 196 42 51 chr9 317633 318103 -117544524 + L1MB7 LINE L1 3077 3550 -2634 2143 114 0 0 chr9 318103 318384 -117544243 + AluSq SINE Alu 1 281 -32 198 0 0 0 chr9 318387 318409 -117544218 + (TAA)n Simple_repeat Simple_repeat 2 23 0 8724 196 42 51 chr9 318409 319093 -117543534 + L1MB7 LINE L1 3552 4240 -1944 1976 159 0 6 chr9 319093 319407 -117543220 + AluJb SINE Alu 1 312 0 8724 196 42 51 chr9 319407 320830 -117541797 + L1MB7 LINE L1 4240 5624 -560 2105 101 38 7 chr9 320830 321118 -117541509 + AluSq SINE Alu 1 297 -16 8724 196 42 51 chr9 321118 321368 -117541259 + L1MB7 LINE L1 5624 5875 -309 238 266 78 0 chr9 321371 321435 -117541192 - MIR SINE MIR -192 70 2 185 293 86 0 chr9 321511 321569 -117541058 - MIR SINE MIR -198 64 2 202 276 86 0 chr9 321578 321636 -117540991 - MIR SINE MIR -198 64 2 247 271 18 53 chr9 322045 322150 -117540477 - Charlie7 DNA MER1_type -1 2611 2513 213 39 0 0 chr9 322150 322176 -117540451 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 247 271 18 53 chr9 322176 322240 -117540387 - Charlie7 DNA MER1_type -99 2513 2448 204 206 0 0 chr9 322632 322666 -117539961 + (CGTG)n Simple_repeat Simple_repeat 4 37 0 353 338 54 39 chr9 323598 323802 -117538825 + MIR SINE MIR 19 225 -37 1803 130 45 0 chr9 323985 324278 -117538349 + AluSx SINE Alu 1 305 0 2111 109 26 13 chr9 325236 325540 -117537087 - AluSx SINE Alu -4 308 1 748 226 164 47 chr9 329464 329686 -117532941 + L1ME4a LINE L1 5666 5861 -260 2283 96 0 0 chr9 329686 329979 -117532648 + AluSx SINE Alu 12 304 -8 748 226 164 47 chr9 329979 330164 -117532463 + L1ME4a LINE L1 5861 6121 0 22 70 0 0 chr9 330564 330607 -117532020 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr9 331098 331119 -117531508 + AT_rich Low_complexity Low_complexity 1 21 0 729 229 38 0 chr9 331179 331336 -117531291 + MER5B DNA MER1_type 1 163 -15 2138 152 0 0 chr9 331372 331682 -117530945 - AluJb SINE Alu -2 310 1 646 142 21 57 chr9 331683 331824 -117530803 + L1MB4 LINE L1 6045 6180 0 1475 173 51 19 chr9 331858 332171 -117530456 + MER33 DNA MER1_type 2 324 0 2509 68 0 0 chr9 332223 332531 -117530096 + AluYb8 SINE Alu 1 308 -10 271 100 0 0 chr9 332540 332580 -117530047 + L1MB3 LINE L1 6133 6172 -11 1124 123 59 0 chr9 332581 332751 -117529876 + AluJo SINE Alu 125 304 -8 280 304 109 38 chr9 334275 334459 -117528168 + MER117 DNA MER1_type 1 197 0 2052 120 3 0 chr9 335933 336239 -117526388 - AluSx SINE Alu 0 307 1 2030 157 3 0 chr9 337065 337371 -117525256 + AluSx SINE Alu 1 307 -5 1867 126 55 14 chr9 337374 337667 -117524960 + AluSx SINE Alu 3 307 -5 1750 164 7 20 chr9 337841 338146 -117524481 - AluJo SINE Alu -11 301 1 1843 134 22 0 chr9 338487 338763 -117523864 - AluSx SINE Alu -18 294 13 228 204 20 0 chr9 339351 339400 -117523227 + (TA)n Simple_repeat Simple_repeat 1 50 0 29 47 0 0 chr9 341150 341193 -117521434 + AT_rich Low_complexity Low_complexity 1 43 0 1243 142 32 41 chr9 341977 342196 -117520431 + MER20 DNA MER1_type 1 217 -2 304 245 135 74 chr9 342283 342446 -117520181 - MIR SINE MIR -5 257 85 21 0 0 0 chr9 343507 343528 -117519099 + AT_rich Low_complexity Low_complexity 1 21 0 928 261 97 44 chr9 344092 344505 -117518122 - MLT1K LTR MaLR -25 563 129 263 232 58 29 chr9 345108 345177 -117517450 + 7SK RNA RNA 7 77 -116 732 296 16 0 chr9 345179 345368 -117517259 + MER117 DNA MER1_type 5 196 -1 528 289 16 0 chr9 345486 345607 -117517020 + MER96 DNA MER1_type? 50 172 -3 308 274 12 12 chr9 346623 346707 -117515920 - MIR SINE MIR -111 151 68 2100 132 0 3 chr9 346992 347288 -117515339 - AluSx SINE Alu -13 299 5 22 0 0 0 chr9 347442 347464 -117515163 + AT_rich Low_complexity Low_complexity 1 22 0 1704 174 23 7 chr9 347702 348006 -117514621 - AluJo SINE Alu -3 309 1 198 404 11 9 chr9 349881 350017 -117512610 - MIR3 SINE MIR -89 119 13 770 302 60 8 chr9 350675 350923 -117511704 - MIR SINE MIR 0 262 2 1113 268 140 49 chr9 351117 351308 -117511319 - MER21B LTR ERV1 -154 709 537 270 0 0 0 chr9 351308 351338 -117511289 + (TAA)n Simple_repeat Simple_repeat 2 31 0 1113 268 140 49 chr9 351338 351796 -117510831 - MER21B LTR ERV1 -326 537 1 1620 218 40 17 chr9 352480 352999 -117509628 - L1ME1 LINE L1 -28 6138 5441 38 107 0 0 chr9 353777 353927 -117508700 + AT_rich Low_complexity Low_complexity 1 150 0 203 0 37 0 chr9 355008 355035 -117507592 + (TTTCC)n Simple_repeat Simple_repeat 2 29 0 1646 156 13 49 chr9 355067 355375 -117507252 - AluJo SINE Alu -10 302 6 2226 131 12 72 chr9 355435 355840 -117506787 - MLT1B LTR MaLR -7 383 3 2142 117 3 0 chr9 356041 356323 -117506304 + AluSp SINE Alu 1 309 0 214 39 0 0 chr9 356323 356349 -117506278 + (TAAA)n Simple_repeat Simple_repeat 2 76 0 394 307 136 6 chr9 356396 356572 -117506055 + MIR SINE MIR 20 218 -44 2172 128 7 0 chr9 358004 358310 -117504317 + AluSx SINE Alu 2 309 -3 1822 162 7 3 chr9 358314 358611 -117504016 + AluJb SINE Alu 1 298 -14 315 167 0 62 chr9 358847 358943 -117503684 - L1MC4 LINE L1 -1339 6703 6614 225 0 0 0 chr9 358950 358975 -117503652 + (T)n Simple_repeat Simple_repeat 1 25 0 1096 176 11 0 chr9 359124 359311 -117503316 + MER5A DNA MER1_type 1 189 0 461 253 15 32 chr9 359393 359551 -117503076 - MIR SINE MIR -56 152 28 2142 148 0 0 chr9 360395 360699 -117501928 - AluSx SINE Alu -8 304 1 444 132 15 0 chr9 360701 360769 -117501858 - AluJo SINE Alu -178 134 66 31 26 0 0 chr9 360781 360819 -117501808 + AT_rich Low_complexity Low_complexity 1 38 0 1556 135 135 17 chr9 361174 361470 -117501157 + MER44D DNA MER2_type 1 601 -8 574 203 104 12 chr9 362125 362185 -117500442 - MER5A DNA MER1_type -3 186 133 2001 111 3 51 chr9 362185 362501 -117500126 + AluJb SINE Alu 1 301 -11 574 203 104 12 chr9 362501 362603 -117500024 - MER5A DNA MER1_type -56 133 9 213 65 0 0 chr9 362740 362771 -117499856 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 298 113 75 0 chr9 362883 362936 -117499691 - L2 LINE L2 0 3313 3257 392 216 18 9 chr9 363081 363192 -117499435 + L1MB8 LINE L1 6064 6175 -3 760 249 72 17 chr9 364171 364408 -117498219 + MIR SINE MIR 2 251 -11 366 275 36 22 chr9 364557 364695 -117497932 + MIR3 SINE MIR 30 169 -39 932 263 22 0 chr9 364785 365013 -117497614 - MIR SINE MIR -29 233 1 813 234 202 55 chr9 365023 365458 -117497169 - MLT1J LTR MaLR -12 499 1 1832 156 10 10 chr9 365501 365789 -117496838 + AluJb SINE Alu 1 288 -24 311 150 62 0 chr9 366414 366484 -117496143 - MLT1G LTR MaLR -5 590 482 577 267 241 12 chr9 366675 367028 -117495599 - MLT1G LTR MaLR -196 394 1 270 192 55 27 chr9 367064 367137 -117495490 - MIR SINE MIR -70 192 118 646 238 70 70 chr9 368220 368500 -117494127 - L1MEd LINE L1 -4897 1222 940 2030 159 0 6 chr9 368500 368814 -117493813 - AluJb SINE Alu 0 312 1 646 238 70 70 chr9 368814 368861 -117493766 - L1MEd LINE L1 -5178 941 895 578 308 81 65 chr9 368881 369785 -117492842 - L1MEd LINE L1 -5191 928 11 435 303 86 6 chr9 369835 370010 -117492617 + MIR SINE MIR 49 237 -25 908 181 6 6 chr9 370083 370243 -117492384 + FRAM SINE Alu 1 160 -6 387 302 0 9 chr9 370271 370387 -117492240 - MER5B DNA MER1_type -58 120 6 197 95 0 24 chr9 370915 370957 -117491670 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 24 0 0 0 chr9 372154 372178 -117490449 + AT_rich Low_complexity Low_complexity 1 24 0 319 222 72 105 chr9 372949 373102 -117489525 + L2 LINE L2 3166 3313 0 1321 158 59 65 chr9 373127 373204 -117489423 - MER33 DNA MER1_type -2263 322 246 2037 137 0 14 chr9 373204 373496 -117489131 + AluJb SINE Alu 1 288 -24 1321 158 59 65 chr9 373496 373740 -117488887 - MER33 DNA MER1_type -2339 246 3 2347 86 0 0 chr9 374507 374797 -117487830 - AluSx SINE Alu -10 302 13 2259 56 3 25 chr9 374853 375183 -117487444 + AluY SINE Alu 2 325 0 1871 158 36 7 chr9 375187 375490 -117487137 + AluJo SINE Alu 1 312 0 269 307 70 26 chr9 375948 376062 -117486565 + MIR SINE MIR 29 147 -61 1090 221 45 5 chr9 378594 378816 -117483811 + AluJo SINE Alu 2 232 -80 581 186 57 44 chr9 379484 379650 -117482977 + MLT1H LTR MaLR 66 242 -307 570 226 17 0 chr9 379651 379766 -117482861 - MER45A DNA AcHobo -1 177 61 283 340 107 15 chr9 380077 380274 -117482353 - MIR SINE MIR -23 239 25 2281 103 0 0 chr9 380675 380965 -117481662 - AluSc SINE Alu -14 295 6 354 313 157 35 chr9 381268 381498 -117481129 + MIR SINE MIR 5 262 0 3671 162 15 5 chr9 381894 382485 -117480142 + MER50 LTR ERV1 1 597 -137 2248 90 66 0 chr9 382485 382817 -117479810 + MER4E LTR ERV1 1 354 -425 1639 143 0 8 chr9 382819 383086 -117479541 - AluSx SINE Alu 0 306 42 325 43 0 0 chr9 383086 383133 -117479494 + AluSp/q SINE Alu 253 299 -4 2363 90 0 7 chr9 383211 383511 -117479116 + AluSx SINE Alu 1 298 -14 885 125 42 0 chr9 385894 386038 -117476589 - AluSq SINE Alu -12 301 152 280 221 26 13 chr9 386213 386290 -117476337 - MLT1K LTR MaLR -2 586 509 207 271 21 42 chr9 386441 386537 -117476090 - MIR SINE MIR -101 161 68 186 365 129 0 chr9 387669 387754 -117474873 + L3 LINE CR1 1432 1527 -50 2180 136 48 8 chr9 387895 388247 -117474380 - MER47A DNA MER2_type 0 366 1 203 27 0 81 chr9 388253 388290 -117474337 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 845 107 0 0 chr9 388721 388833 -117473794 + FRAM SINE Alu 52 163 -13 358 305 94 24 chr9 389368 389581 -117473046 - MIR SINE MIR -3 259 32 2454 169 69 9 chr9 389785 390246 -117472381 + MER44D DNA MER2_type 59 602 -3 472 262 7 35 chr9 390266 390407 -117472220 - MER5B DNA MER1_type -22 156 20 287 349 0 0 chr9 390459 390568 -117472059 + MIR SINE MIR 84 192 -70 418 253 108 6 chr9 391238 391404 -117471223 + MIR SINE MIR 60 242 -20 793 261 48 102 chr9 392069 392267 -117470360 + MLT1K LTR MaLR 74 281 -307 563 173 58 14 chr9 392267 392406 -117470221 - L1MB8 LINE L1 -1 6177 6033 793 261 48 102 chr9 392406 392563 -117470064 + MLT1K LTR MaLR 281 395 -193 2357 101 10 0 chr9 392563 392870 -117469757 + AluSx SINE Alu 1 310 -2 793 261 48 102 chr9 392870 393033 -117469594 + MLT1K LTR MaLR 395 565 -23 192 125 0 0 chr9 393315 393347 -117469280 + (CAT)n Simple_repeat Simple_repeat 2 33 0 1064 245 4 16 chr9 393353 393602 -117469025 - MIR SINE MIR -15 247 2 2223 133 23 8 chr9 394146 394498 -117468129 + MER47A DNA MER2_type 1 357 -9 277 319 81 56 chr9 395450 395610 -117467017 + MIR SINE MIR 34 197 -65 276 233 200 25 chr9 395874 395994 -117466633 + MIR3 SINE MIR 6 146 -62 262 316 34 34 chr9 396040 396157 -117466470 + L2 LINE L2 3197 3313 0 564 149 0 0 chr9 396334 396421 -117466206 + MER53 DNA DNA 3 89 -100 476 188 0 0 chr9 396354 396439 -117466188 - MER53 DNA DNA -12 177 93 * 241 271 156 0 chr9 396613 396709 -117465918 + MIR SINE MIR 152 262 0 1515 189 7 28 chr9 397192 397507 -117465120 + AluJo SINE Alu 1 309 0 1065 224 74 82 chr9 397692 397931 -117464696 - L2 LINE L2 -1 3312 3073 1854 178 0 3 chr9 397931 398229 -117464398 - AluJo SINE Alu -11 301 5 1065 224 74 82 chr9 398229 398243 -117464384 - L2 LINE L2 -240 3073 3060 2306 95 0 3 chr9 398243 398539 -117464088 - AluSc SINE Alu -14 295 1 1065 224 74 82 chr9 398539 398677 -117463950 - L2 LINE L2 -253 3060 2922 2440 130 5 19 chr9 398677 399046 -117463581 + THE1B LTR MaLR 1 364 0 1065 224 74 82 chr9 399046 399139 -117463488 - L2 LINE L2 -391 2922 2830 482 215 30 122 chr9 399359 399596 -117463031 + MIR SINE MIR 48 262 0 2448 83 3 13 chr9 399715 400028 -117462599 + AluSp SINE Alu 1 310 -3 1701 210 81 79 chr9 400052 400527 -117462100 + MLT1F LTR MaLR 35 513 -29 2248 92 31 0 chr9 400527 400819 -117461808 - AluSx SINE Alu -11 301 1 1701 210 81 79 chr9 400819 400848 -117461779 + MLT1F LTR MaLR 513 540 -2 2337 102 0 0 chr9 400859 401152 -117461475 - AluSg SINE Alu -16 294 2 835 218 107 55 chr9 401431 401697 -117460930 + MLT1F1 LTR MaLR 73 363 -204 198 0 0 0 chr9 402941 402963 -117459664 + (CA)n Simple_repeat Simple_repeat 2 23 0 513 285 77 27 chr9 403010 403231 -117459396 + MIR SINE MIR 29 260 -2 1945 143 0 11 chr9 403244 403582 -117459045 + AluSx SINE Alu 1 335 0 222 233 33 33 chr9 403730 403790 -117458837 + L2 LINE L2 3213 3272 0 25 65 0 0 chr9 403887 403933 -117458694 + AT_rich Low_complexity Low_complexity 1 46 0 195 69 0 0 chr9 404403 404432 -117458195 + (CA)n Simple_repeat Simple_repeat 1 29 0 1679 134 4 4 chr9 404581 404827 -117457800 + AluJb SINE Alu 39 284 -28 183 42 0 0 chr9 404832 404856 -117457771 + (CA)n Simple_repeat Simple_repeat 1 24 0 254 287 0 46 chr9 405080 405167 -117457460 - MIR SINE MIR -74 188 106 2872 166 23 32 chr9 405464 405868 -117456759 + L1MB7 LINE L1 5202 5600 -578 2420 74 0 3 chr9 405868 406165 -117456462 + AluY SINE Alu 1 296 -15 2872 166 23 32 chr9 406165 406397 -117456230 + L1MB7 LINE L1 5600 5833 -345 2720 157 48 0 chr9 406665 407142 -117455485 - MER34 LTR ERV1 -16 526 27 294 73 0 0 chr9 408573 408614 -117454013 + (CA)n Simple_repeat Simple_repeat 1 41 0 568 190 52 35 chr9 408703 408819 -117453808 - FLAM_C SINE Alu -15 118 1 1662 171 67 3 chr9 408995 409340 -117453287 + L1MB7 LINE L1 5818 6184 0 2075 111 20 10 chr9 409501 409798 -117452829 - AluSx SINE Alu -12 300 1 1604 162 33 46 chr9 409808 410111 -117452516 - AluJb SINE Alu -13 299 1 300 385 7 28 chr9 410230 410373 -117452254 - MIR3 SINE MIR -33 175 36 21 57 0 0 chr9 411735 411770 -117450857 + GC_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr9 412057 412078 -117450549 + GC_rich Low_complexity Low_complexity 1 21 0 661 198 99 28 chr9 412977 413159 -117449468 - L1MB7 LINE L1 -2 6182 5988 237 65 0 0 chr9 413500 413531 -117449096 + (TG)n Simple_repeat Simple_repeat 1 31 0 1355 130 0 10 chr9 414139 414331 -117448296 + AluJo SINE Alu 97 286 -26 923 142 7 13 chr9 414363 414381 -117448246 - AluSx SINE Alu -158 154 137 1977 113 7 18 chr9 414381 414529 -117448098 - AluSq SINE Alu -32 281 136 2380 85 0 3 chr9 414529 414823 -117447804 - AluSc SINE Alu -11 298 6 1977 113 7 18 chr9 414823 414958 -117447669 - AluSq SINE Alu -177 136 1 923 142 7 13 chr9 414958 415094 -117447533 - AluSx SINE Alu -175 137 1 2451 77 6 0 chr9 415098 415409 -117447218 - AluSp SINE Alu 0 313 1 1567 267 68 34 chr9 415416 416007 -117446620 - L1ME3A LINE L1 -44 6126 5516 2194 96 7 0 chr9 416072 416363 -117446264 - AluSc SINE Alu -12 297 5 1740 157 0 51 chr9 416773 417085 -117445542 - AluJo SINE Alu -16 296 1 629 200 45 7 chr9 418370 418525 -117444102 + MIR SINE MIR 39 199 -63 1163 248 74 76 chr9 418784 419161 -117443466 - MLT1H1 LTR MaLR -4 622 207 999 231 54 30 chr9 419165 419203 -117443424 - MLT2D LTR ERVL 0 414 378 195 42 0 0 chr9 419203 419227 -117443400 + (TG)n Simple_repeat Simple_repeat 2 25 0 999 231 54 30 chr9 419227 419521 -117443106 - MLT2D LTR ERVL -36 378 74 557 229 83 13 chr9 419560 419717 -117442910 - MLT1H1 LTR MaLR -400 190 23 331 238 38 23 chr9 419741 419878 -117442749 - HAL1b LINE L1 -199 2308 785 1933 113 0 4 chr9 420741 420997 -117441630 + AluSx SINE Alu 36 290 -22 1188 111 0 0 chr9 421073 421253 -117441374 + (TCCC)n Simple_repeat Simple_repeat 1 180 0 1856 236 158 2 chr9 421435 421974 -117440653 - L1ME3A LINE L1 -159 6011 5389 2499 69 0 7 chr9 422034 422340 -117440287 + AluY SINE Alu 1 304 -7 261 0 0 0 chr9 423971 424000 -117438627 + (CA)n Simple_repeat Simple_repeat 2 30 0 2088 112 20 3 chr9 424080 424375 -117438252 - AluSg SINE Alu -10 300 1 2137 129 3 0 chr9 424708 425010 -117437617 - AluSx SINE Alu -9 303 1 2339 97 3 0 chr9 425862 426160 -117436467 - AluSp SINE Alu -12 301 3 2021 150 0 10 chr9 427028 427335 -117435292 + AluJb SINE Alu 1 304 -8 264 271 85 42 chr9 427355 427473 -117435154 - MLT1I LTR MaLR -232 177 55 2219 112 3 3 chr9 428535 428840 -117433787 - AluSx SINE Alu -7 305 1 23 0 0 0 chr9 429198 429221 -117433406 + AT_rich Low_complexity Low_complexity 1 23 0 1268 276 173 28 chr9 429970 430997 -117431630 + L2 LINE L2 2131 3307 -6 2040 143 3 0 chr9 431488 431789 -117430838 - AluSx SINE Alu -10 302 1 2316 96 0 26 chr9 431955 432267 -117430360 - AluSx SINE Alu -8 304 1 306 0 0 0 chr9 432323 432357 -117430270 + (TG)n Simple_repeat Simple_repeat 2 35 0 1721 115 4 27 chr9 432358 432619 -117430008 - AluSx SINE Alu -23 289 35 916 141 7 0 chr9 433403 433538 -117429089 + AluJo SINE Alu 1 136 -176 259 241 0 0 chr9 433704 433758 -117428869 + MER116 DNA Mariner 5 58 -22 708 251 137 38 chr9 433760 434182 -117428445 - HAL1 LINE L1 -167 2340 1877 1083 233 149 73 chr9 434185 434255 -117428372 - HAL1 LINE L1 -719 1788 1725 1874 151 3 0 chr9 434255 434573 -117428054 - AluSq SINE Alu 0 319 1 1083 233 149 73 chr9 434573 434839 -117427788 - HAL1 LINE L1 -782 1725 1481 2119 73 59 21 chr9 434839 435128 -117427499 + AluY SINE Alu 1 300 -11 1083 233 149 73 chr9 435128 435432 -117427195 - HAL1 LINE L1 -1026 1481 1097 2307 89 3 22 chr9 435442 435755 -117426872 - AluSx SINE Alu 0 312 6 1929 157 7 0 chr9 435778 436071 -117426556 - AluJb SINE Alu -17 295 1 402 100 0 0 chr9 436207 436267 -117426360 + (CA)n Simple_repeat Simple_repeat 2 61 0 434 83 0 4 chr9 436267 436471 -117426156 - AluSc SINE Alu -17 292 1 1152 309 100 17 chr9 436486 437075 -117425552 - L1MC4a LINE L1 -1847 5961 5324 21 0 0 0 chr9 437272 437293 -117425334 + AT_rich Low_complexity Low_complexity 1 21 0 273 241 114 32 chr9 437293 437451 -117425176 - L1P LINE L1 -1090 5056 4886 1450 169 126 0 chr9 437679 437940 -117424687 + AluJb SINE Alu 1 294 -18 1690 182 31 3 chr9 438129 438420 -117424207 + AluJo SINE Alu 1 299 -13 185 0 40 0 chr9 438817 438842 -117423785 + (TG)n Simple_repeat Simple_repeat 1 26 0 962 86 0 0 chr9 439204 439332 -117423295 - AluSp/q SINE Alu -3 310 183 198 0 0 0 chr9 439337 439359 -117423268 + (T)n Simple_repeat Simple_repeat 1 22 0 1096 151 13 23 chr9 439359 439586 -117423041 - L1MB3 LINE L1 -36 6147 5917 300 297 97 0 chr9 440290 440435 -117422192 + MIR SINE MIR 72 230 -32 199 250 44 0 chr9 442396 442464 -117420163 - MIR SINE MIR -3 259 189 1003 235 12 20 chr9 442714 442969 -117419658 - MLT1D-int LTR MaLR -1118 253 1 1803 181 37 103 chr9 442971 443032 -117419595 - MLT1D LTR MaLR -4 501 438 2010 124 7 14 chr9 443032 443322 -117419305 + AluSx SINE Alu 5 292 -20 1803 181 37 103 chr9 443322 443796 -117418831 - MLT1D LTR MaLR -67 438 1 866 126 161 60 chr9 444628 444827 -117417800 + MER20 DNA MER1_type 1 219 0 197 274 36 48 chr9 445111 445195 -117417432 + MIR SINE MIR 96 178 -84 195 290 65 0 chr9 445702 445764 -117416863 + MIR SINE MIR 117 182 -80 2166 131 7 0 chr9 445847 446153 -117416474 - AluSx SINE Alu -4 308 1 7331 171 100 16 chr9 446185 446466 -117416161 - L1 LINE L1 -1446 4700 4444 1903 164 17 3 chr9 446466 446759 -117415868 - AluJo SINE Alu -15 297 1 7331 171 100 16 chr9 446759 448089 -117414538 - L1 LINE L1 -1702 4444 2954 2175 201 21 70 chr9 448108 448412 -117414215 + L1MA9 LINE L1 4695 5012 -1172 243 108 0 0 chr9 448412 448449 -117414178 + tRNA-Cys-TGC tRNA tRNA 1 37 -38 2175 201 21 70 chr9 448449 448780 -117413847 + L1MA9 LINE L1 5012 5322 -862 2752 10 0 0 chr9 448780 449073 -117413554 + AluY SINE Alu 1 293 -18 2175 201 21 70 chr9 449073 449188 -117413439 + L1MA9 LINE L1 5322 5441 -743 932 113 8 15 chr9 449189 449322 -117413305 + AluSq/x SINE Alu 1 132 -180 3930 164 91 17 chr9 449322 450140 -117412487 + L1MA9 LINE L1 5432 6309 -3 2311 108 0 10 chr9 450246 450552 -117412075 + AluSq SINE Alu 1 303 -10 257 27 54 0 chr9 450971 451008 -117411619 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 1831 151 18 7 chr9 451011 451295 -117411332 - AluJo SINE Alu -25 287 1 193 333 86 37 chr9 451794 451956 -117410671 - L2 LINE L2 -491 2823 2654 327 282 189 18 chr9 452202 452535 -117410092 - L2 LINE L2 -881 2433 2044 2299 84 3 34 chr9 452697 453019 -117409608 - AluSx SINE Alu 0 312 1 340 352 101 6 chr9 453021 453180 -117409447 - MER91A DNA MER1_type -19 177 4 1107 203 28 24 chr9 453196 453408 -117409219 + MER20 DNA MER1_type 7 219 0 24 67 0 0 chr9 455688 455733 -117406894 + AT_rich Low_complexity Low_complexity 1 45 0 895 137 0 30 chr9 455769 455900 -117406727 + AluJo SINE Alu 1 127 -185 863 191 19 0 chr9 457436 457593 -117405034 + AluJo SINE Alu 137 296 -6 546 318 68 79 chr9 458583 458738 -117403889 - L2 LINE L2 -35 3237 3082 1972 142 13 26 chr9 458738 459041 -117403586 + AluJo SINE Alu 1 299 -13 546 318 68 79 chr9 459041 459225 -117403402 - L2 LINE L2 -190 3082 2902 248 303 15 0 chr9 459227 459293 -117403334 - L2 LINE L2 -626 2688 2622 2037 116 3 14 chr9 459835 460128 -117402499 + AluJo SINE Alu 1 290 -22 316 281 174 20 chr9 460297 460493 -117402134 - MIR SINE MIR -17 245 20 22 0 0 0 chr9 460853 460875 -117401752 + AT_rich Low_complexity Low_complexity 1 22 0 698 200 14 14 chr9 460876 461021 -117401606 - MER5A DNA MER1_type 0 189 45 1965 155 63 86 chr9 461025 461421 -117401206 - MLT2B2 LTR ERVL -10 505 122 3258 107 40 0 chr9 461421 461915 -117400712 - MER75 DNA T2_type 0 514 1 1965 155 63 86 chr9 461915 462029 -117400598 - MLT2B2 LTR ERVL -393 122 7 298 180 0 0 chr9 462035 462085 -117400542 - MER5A DNA MER1_type -138 51 2 931 189 6 6 chr9 464010 464179 -117398448 + AluJb SINE Alu 139 307 -5 323 269 51 30 chr9 464191 464388 -117398239 + L1MC5 LINE L1 7713 7913 -48 1566 171 91 0 chr9 464718 464993 -117397634 + AluJb SINE Alu 1 300 -12 2140 210 25 30 chr9 465273 465797 -117396830 + MER82 DNA MER2_type 11 531 -122 698 93 21 0 chr9 465798 465895 -117396732 + U6 snRNA snRNA 1 99 -8 466 217 130 0 chr9 465917 466032 -117396595 + MER82 DNA MER2_type 524 653 0 380 346 65 34 chr9 467071 467334 -117395293 + L3 LINE CR1 278 548 -1029 540 306 210 32 chr9 467687 468125 -117394502 + L3 LINE CR1 687 1202 -375 509 247 82 58 chr9 468261 468589 -117394038 - L1ME4a LINE L1 -216 5905 5570 224 298 60 0 chr9 468619 468703 -117393924 + L3 LINE CR1 1462 1550 -27 2916 6 0 0 chr9 469011 469327 -117393300 - AluYb8 SINE Alu -2 316 1 302 333 94 19 chr9 469539 469698 -117392929 + MIR SINE MIR 90 260 -2 238 289 144 0 chr9 469761 469858 -117392769 + L2 LINE L2 3198 3308 -5 2409 62 0 10 chr9 471028 471335 -117391292 - AluY SINE Alu -7 304 1 2811 167 84 71 chr9 472371 472841 -117389786 - LTR8A LTR ERV1 0 727 243 5529 113 25 1 chr9 472841 474289 -117388338 - L1PA13 LINE L1 -11 6152 4681 2811 167 84 71 chr9 474289 474536 -117388091 - LTR8A LTR ERV1 -484 243 1 259 218 128 0 chr9 474987 475065 -117387562 - MIR SINE MIR -91 171 84 286 163 0 0 chr9 475442 475491 -117387136 - Alu SINE Alu -20 282 234 1530 175 46 15 chr9 475492 475755 -117386872 - AluJo SINE Alu -41 271 1 2518 103 83 2 chr9 476240 476636 -117385991 + MSTC LTR MaLR 1 428 0 310 278 25 102 chr9 477847 478092 -117384535 - L1ME LINE L1 -384 5737 5512 28 0 0 0 chr9 478534 478562 -117384065 + AT_rich Low_complexity Low_complexity 1 28 0 1757 161 13 26 chr9 479125 479301 -117383326 - AluJo SINE Alu -6 306 134 1858 80 0 8 chr9 479301 479539 -117383088 + AluY SINE Alu 57 292 -19 1757 161 13 26 chr9 479539 479672 -117382955 - AluJo SINE Alu -178 134 1 468 70 0 0 chr9 480239 480319 -117382308 - Alu SINE Alu 0 307 228 1994 31 0 0 chr9 480419 480648 -117381979 - AluYb8 SINE Alu -73 245 17 27 73 0 0 chr9 481543 481598 -117381029 + AT_rich Low_complexity Low_complexity 1 55 0 1724 177 7 0 chr9 531834 532117 -117330510 - AluJo SINE Alu -27 285 1 2166 184 71 113 chr9 532236 532985 -117329642 - LTR8A LTR ERV1 -24 685 1 432 277 44 22 chr9 532986 533123 -117329504 - MLT1L LTR MaLR -128 487 348 340 289 44 0 chr9 533155 533269 -117329358 - MLT1L LTR MaLR -339 276 158 1977 115 83 0 chr9 533853 534141 -117328486 - AluSx SINE Alu 0 312 1 432 275 67 13 chr9 534243 534392 -117328235 - MER5B DNA MER1_type -16 162 6 2186 108 10 3 chr9 534752 535057 -117327570 + AluSg SINE Alu 1 307 -3 879 231 16 11 chr9 535624 535806 -117326821 - MER5A DNA MER1_type -6 183 1 181 125 25 0 chr9 535963 536003 -117326624 + MER5C DNA MER1_type 234 274 -50 480 292 26 13 chr9 536052 536206 -117326421 - MLT1L LTR MaLR -113 502 347 723 194 52 0 chr9 536345 536479 -117326148 - MSTC LTR MaLR -2 426 286 1985 139 30 0 chr9 537482 537783 -117324844 - AluSx SINE Alu -2 310 1 1866 189 36 25 chr9 537859 538219 -117324408 - MLT1A1 LTR MaLR -1 364 1 1070 133 36 0 chr9 538403 538569 -117324058 - AluSg/x SINE Alu -7 305 134 2070 129 3 0 chr9 538569 538863 -117323764 - AluSx SINE Alu -17 295 1 2291 95 0 0 chr9 538866 539162 -117323465 - AluY SINE Alu -15 296 1 1022 157 8 81 chr9 539966 540214 -117322413 - L1MB8 LINE L1 0 6178 5949 752 163 39 16 chr9 541716 541845 -117320782 - FLAM_C SINE Alu 0 133 2 2228 107 0 10 chr9 541860 542169 -117320458 - AluSx SINE Alu -6 306 1 2824 103 56 15 chr9 542521 542929 -117319698 - MSTA LTR MaLR -3 425 1 2077 127 3 13 chr9 543008 543316 -117319311 + AluSx SINE Alu 4 308 -4 1903 168 3 0 chr9 543331 543628 -117318999 + AluSx SINE Alu 7 304 -8 26 50 0 0 chr9 543692 543732 -117318895 + AT_rich Low_complexity Low_complexity 1 40 0 1284 95 0 18 chr9 543766 543935 -117318692 + AluSq SINE Alu 1 166 -147 504 121 0 0 chr9 543939 544005 -117318622 + AluS SINE Alu 221 286 -24 25 53 0 18 chr9 544353 544378 -117318249 + AT_rich Low_complexity Low_complexity 1 25 -31 821 143 0 53 chr9 544378 544511 -117318116 + FLAM_C SINE Alu 2 127 -6 25 53 0 18 chr9 544511 544542 -117318085 + AT_rich Low_complexity Low_complexity 25 56 0 2018 114 9 44 chr9 544841 545158 -117317469 - AluSx SINE Alu 0 312 7 201 154 0 0 chr9 545383 545422 -117317205 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2340 93 0 10 chr9 546166 546468 -117316159 - AluSc SINE Alu -10 299 1 189 359 0 0 chr9 546741 546794 -117315833 - L2 LINE L2 -87 3185 3133 235 287 109 20 chr9 546854 546955 -117315672 + MIR SINE MIR 107 216 -46 405 206 103 48 chr9 547423 547549 -117315078 - MER94 DNA DNA 0 134 2 339 270 20 10 chr9 548618 548718 -117313909 - MER5A DNA MER1_type -80 109 9 233 298 0 48 chr9 549174 549296 -117313331 + MIR SINE MIR 63 178 -30 271 284 56 128 chr9 550190 550404 -117312223 + L1ME4a LINE L1 5529 5714 -2094 2167 120 0 7 chr9 550404 550703 -117311924 + AluSq SINE Alu 1 297 -16 271 284 56 128 chr9 550703 550808 -117311819 + L1ME4a LINE L1 5714 5825 -1983 256 181 133 133 chr9 550870 550975 -117311652 + L1ME4a LINE L1 5945 6049 -72 355 274 128 34 chr9 551317 551496 -117311131 - MIR3 SINE MIR -9 199 4 587 218 68 0 chr9 552313 552446 -117310181 - MER5A DNA MER1_type -47 142 1 317 273 24 24 chr9 552476 552579 -117310048 + MER5A DNA MER1_type 3 116 -73 312 70 0 0 chr9 552980 553023 -117309604 + (GA)n Simple_repeat Simple_repeat 1 43 0 342 158 18 0 chr9 553056 553113 -117309514 - MER5A DNA MER1_type -131 58 1 472 250 57 10 chr9 553121 553247 -117309380 - MER5B DNA MER1_type 0 178 56 2257 109 0 3 chr9 553253 553557 -117309070 + AluSq SINE Alu 1 303 -10 477 244 179 19 chr9 553650 553806 -117308821 - MER5A DNA MER1_type 0 189 9 3351 176 48 42 chr9 555046 555791 -117306836 - L1MB2 LINE L1 0 6171 5422 726 161 154 0 chr9 556072 556202 -117306425 - FAM SINE Alu -34 151 2 225 293 67 60 chr9 556425 556575 -117306052 + L2 LINE L2 2717 2867 -447 977 213 65 54 chr9 556628 556999 -117305628 - L1MB2 LINE L1 -967 5179 4805 577 291 56 67 chr9 557001 557358 -117305269 + L2 LINE L2 2961 3313 0 909 178 16 27 chr9 557489 557674 -117304953 - MER5A DNA MER1_type -1 188 6 1448 185 240 9 chr9 557674 558020 -117304607 - MSTB LTR MaLR 0 426 1 7108 63 0 0 chr9 559310 560210 -117302417 - L1PA5 LINE L1 -20 6134 5235 4755 82 16 0 chr9 560199 560831 -117301796 + L1P LINE L1 4347 4988 -1158 * 2404 84 0 0 chr9 560831 561127 -117301500 - AluSx SINE Alu -16 296 1 1057 113 33 0 chr9 562373 562524 -117300103 + THE1C LTR MaLR 4 159 -216 1996 140 26 0 chr9 562525 562867 -117299760 - L1MA4 LINE L1 -181 6301 5951 657 125 0 21 chr9 562870 562966 -117299661 - AluJo SINE Alu -177 135 42 12963 177 41 21 chr9 562966 564308 -117298319 - L1MA4 LINE L1 -521 5961 4647 1568 164 40 43 chr9 564308 564607 -117298020 + AluJo SINE Alu 1 298 -14 12963 177 41 21 chr9 564607 566145 -117296482 - L1MA4 LINE L1 -1835 4647 3011 2145 122 34 0 chr9 566145 566441 -117296186 - AluSx SINE Alu -6 306 1 12963 177 41 21 chr9 566441 566810 -117295817 - L1MA4 LINE L1 -3471 3011 2651 583 84 122 0 chr9 566801 566908 -117295719 - L1MA4 LINE L1 -4203 1125 1006 * 7096 180 31 33 chr9 566915 567141 -117295486 - L1M1 LINE L1 -4031 2297 2072 1913 164 105 3 chr9 567141 567446 -117295181 - MER1B DNA MER1_type -1 336 1 7096 180 31 33 chr9 567446 569518 -117293109 - L1M1 LINE L1 -4256 2072 27 1938 72 110 0 chr9 569773 570037 -117292590 + AluY SINE Alu 1 293 -18 1763 79 0 0 chr9 570158 570372 -117292255 + AluSg/x SINE Alu 84 297 -15 240 277 88 22 chr9 570403 570540 -117292087 + MARNA DNA Mariner 424 569 -17 590 297 52 9 chr9 570546 570758 -117291869 + MIR SINE MIR 25 245 -17 2161 125 3 6 chr9 571607 571919 -117290708 - AluSx SINE Alu -1 311 1 2122 114 7 3 chr9 573115 573414 -117289213 - AluSx SINE Alu -12 300 1 25 31 0 0 chr9 573414 573446 -117289181 + AT_rich Low_complexity Low_complexity 1 32 0 423 238 157 22 chr9 573448 573671 -117288956 - L1ME4a LINE L1 -65 6056 5804 4152 138 26 10 chr9 574075 574700 -117287927 - MER41B LTR ERV1 0 635 1 279 318 45 11 chr9 576225 576313 -117286314 + MIR SINE MIR 20 110 -98 364 253 80 49 chr9 576670 576832 -117285795 - MIR SINE MIR -1 261 95 1947 136 11 0 chr9 576864 577150 -117285477 + AluSx SINE Alu 9 297 -15 237 200 31 31 chr9 577689 577754 -117284873 + L1MC4 LINE L1 6636 6700 -1342 200 254 0 18 chr9 577757 577812 -117284815 + (TA)n Simple_repeat Simple_repeat 2 55 0 1978 124 32 3 chr9 577833 578116 -117284511 - AluSx SINE Alu -21 291 1 491 181 86 9 chr9 578971 579076 -117283551 - L2 LINE L2 -14 3299 3187 1828 150 10 26 chr9 579341 579647 -117282980 + AluJo SINE Alu 1 301 -11 219 241 17 121 chr9 579938 580054 -117282573 + MIR SINE MIR 128 231 -31 2263 110 0 0 chr9 580407 580707 -117281920 + AluSx SINE Alu 1 300 -12 508 287 66 26 chr9 580877 581149 -117281478 - L1ME4a LINE L1 -246 5875 5593 186 43 0 0 chr9 585431 585454 -117277173 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 281 263 61 30 chr9 586368 586467 -117276160 - L2 LINE L2 0 3272 3171 2141 111 24 0 chr9 586734 587023 -117275604 + AluSx SINE Alu 2 297 -15 192 77 0 0 chr9 588373 588399 -117274228 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2232 96 0 56 chr9 588415 588738 -117273889 + AluSx SINE Alu 1 305 -7 370 211 21 21 chr9 588852 588947 -117273680 + MIR SINE MIR 127 221 -41 890 155 0 14 chr9 589828 589970 -117272657 - FLAM_C SINE Alu -3 140 1 1810 163 3 17 chr9 590021 590322 -117272305 - AluJb SINE Alu -11 301 5 488 214 57 34 chr9 590925 591072 -117271555 - L1ME1 LINE L1 0 6178 6021 1598 176 54 7 chr9 591142 591420 -117271207 + AluJo SINE Alu 1 291 -21 429 237 215 0 chr9 594155 594290 -117268337 - MIR SINE MIR -87 175 12 2470 38 28 0 chr9 594420 594709 -117267918 + AluY SINE Alu 1 297 -14 180 266 53 96 chr9 594802 594990 -117267637 - L2 LINE L2 -159 3113 2934 248 240 173 58 chr9 595382 595486 -117267141 - L1MC4 LINE L1 -2 8040 7925 300 27 0 0 chr9 595486 595523 -117267104 + (TG)n Simple_repeat Simple_repeat 2 38 0 720 201 178 169 chr9 595531 596204 -117266423 - L1MC4 LINE L1 -403 7639 6961 382 309 94 34 chr9 597259 597408 -117265219 + L2 LINE L2 2684 2841 -473 458 286 105 65 chr9 597455 597780 -117264847 + L2 LINE L2 2935 3272 0 1399 149 0 5 chr9 598191 598399 -117264228 + AluJo SINE Alu 84 290 -22 1944 109 47 0 chr9 599534 599809 -117262818 - AluSp SINE Alu -21 292 5 964 172 39 39 chr9 599886 600090 -117262537 - MER20 DNA MER1_type 0 219 16 459 234 53 0 chr9 600794 600888 -117261739 + L2 LINE L2 3186 3284 -29 203 147 0 0 chr9 600905 600939 -117261688 + (GA)n Simple_repeat Simple_repeat 2 35 0 2147 114 0 13 chr9 601403 601701 -117260926 - AluSx SINE Alu -18 294 1 2258 102 0 29 chr9 602109 602423 -117260204 - AluSx SINE Alu -7 305 1 911 285 32 21 chr9 602567 602851 -117259776 - MLT1J LTR MaLR -1 510 224 1863 157 0 38 chr9 603108 603427 -117259200 + AluJo SINE Alu 1 307 -5 305 206 32 0 chr9 603447 603510 -117259117 - L1ME4a LINE L1 -56 6065 6001 1984 94 0 0 chr9 603613 603868 -117258759 + AluSx SINE Alu 1 255 -57 2084 106 0 11 chr9 604024 604306 -117258321 - AluSq SINE Alu -30 283 5 22 0 0 0 chr9 604309 604331 -117258296 + AT_rich Low_complexity Low_complexity 1 22 0 292 221 91 65 chr9 604878 605032 -117257595 + L1ME4a LINE L1 5962 6119 -2 2208 92 10 16 chr9 608020 608325 -117254302 - AluSq SINE Alu -10 303 1 970 211 18 44 chr9 608404 608632 -117253995 + L1PA16 LINE L1 5942 6163 -3 237 310 25 30 chr9 608661 608745 -117253882 - MIR SINE MIR -67 141 92 2262 110 10 3 chr9 608745 609055 -117253572 + AluSx SINE Alu 1 312 0 237 310 25 30 chr9 609055 609114 -117253513 - MIR SINE MIR -116 92 34 797 169 0 8 chr9 612367 612491 -117250136 + FLAM_A SINE Alu 1 123 -10 507 312 69 13 chr9 612508 612739 -117249888 - L2 LINE L2 -18 3295 3052 1941 135 14 0 chr9 612771 613067 -117249560 - AluSx SINE Alu -12 300 1 251 256 136 5 chr9 614594 614739 -117247888 + MIR SINE MIR 28 256 -6 979 163 25 64 chr9 615188 615391 -117247236 + AluJo SINE Alu 87 281 -31 1728 163 17 3 chr9 615419 615720 -117246907 + AluJb SINE Alu 7 311 -1 23 33 0 0 chr9 616020 616050 -117246577 + AT_rich Low_complexity Low_complexity 1 30 0 240 337 36 60 chr9 616636 616708 -117245919 + MIR3 SINE MIR 17 89 -119 1857 161 10 6 chr9 616708 617019 -117245608 - AluJb SINE Alu 0 312 1 240 337 36 60 chr9 617019 617112 -117245515 + MIR3 SINE MIR 89 178 -30 2122 99 0 29 chr9 617363 617676 -117244951 - AluSg SINE Alu -6 304 1 23 0 0 0 chr9 618000 618023 -117244604 + AT_rich Low_complexity Low_complexity 1 23 0 625 125 0 118 chr9 618153 618289 -117244338 - FRAM SINE Alu -12 164 45 1339 193 7 43 chr9 618760 619065 -117243562 - AluJo SINE Alu -18 294 1 635 190 22 51 chr9 619067 619204 -117243423 - AluJo/FLAM SINE Alu -169 133 1 365 134 15 30 chr9 619411 619478 -117243149 - MER5B DNA MER1_type 0 178 113 3033 169 74 47 chr9 619478 620411 -117242216 + LTR8-int LTR ERV1 5043 6257 -6 1029 186 142 9 chr9 620421 620647 -117241980 + LTR8 LTR ERV1 1 256 -435 23 0 0 0 chr9 620662 620685 -117241942 + AT_rich Low_complexity Low_complexity 1 23 0 297 125 0 0 chr9 620723 620779 -117241848 + (TC)n Simple_repeat Simple_repeat 1 56 0 234 155 14 127 chr9 620803 620874 -117241753 + MER5B DNA MER1_type 116 178 0 190 260 20 0 chr9 621204 621254 -117241373 - MIR SINE MIR -11 251 201 602 232 49 32 chr9 621695 621880 -117240747 + L1ME2 LINE L1 5943 6130 -34 797 151 8 16 chr9 621909 622035 -117240592 + FRAM SINE Alu 21 145 -31 668 226 82 62 chr9 622109 622224 -117240403 + L1MC5 LINE L1 7489 7600 -361 1450 180 10 37 chr9 622224 622519 -117240108 + AluJb SINE Alu 5 291 -21 668 226 82 62 chr9 622519 622806 -117239821 + L1MC5 LINE L1 7600 7899 -62 2109 98 0 14 chr9 622925 623222 -117239405 + AluSx SINE Alu 1 293 -19 264 230 148 82 chr9 623570 623679 -117238948 + MIR3 SINE MIR 37 158 -50 1706 106 0 16 chr9 623679 623925 -117238702 + AluSx SINE Alu 60 301 -11 264 230 148 82 chr9 623925 623950 -117238677 + MIR3 SINE MIR 158 180 -28 301 319 35 9 chr9 624046 624159 -117238468 + MER5A DNA MER1_type 50 165 -24 2005 119 3 0 chr9 624766 625059 -117237568 + AluSx SINE Alu 1 294 -18 1864 136 3 17 chr9 625087 625389 -117237238 + AluSq SINE Alu 1 298 -15 316 319 176 32 chr9 625439 625655 -117236972 - L1ME4a LINE L1 -246 5875 5629 2064 100 21 3 chr9 625732 626023 -117236604 - AluSx SINE Alu -14 298 3 429 20 0 0 chr9 626090 626140 -117236487 + (TG)n Simple_repeat Simple_repeat 1 50 0 241 284 0 0 chr9 626157 626231 -117236396 - L1ME LINE L1 -205 5916 5843 5227 115 29 62 chr9 626258 626591 -117236036 + MER4D LTR ERV1 1 344 -559 1994 107 9 28 chr9 626591 626908 -117235719 - AluSx SINE Alu -1 311 1 5227 115 29 62 chr9 626908 627508 -117235119 + MER4D LTR ERV1 344 903 0 2059 112 0 3 chr9 628819 629106 -117233521 + AluSx SINE Alu 1 286 -26 1132 183 100 0 chr9 631951 632180 -117230447 + AluJo SINE Alu 40 291 -21 26 0 0 0 chr9 632205 632231 -117230396 + AT_rich Low_complexity Low_complexity 1 26 0 1874 135 26 13 chr9 632240 632543 -117230084 + AluJb SINE Alu 1 307 -5 22 0 0 0 chr9 632768 632790 -117229837 + AT_rich Low_complexity Low_complexity 1 22 0 2105 101 0 0 chr9 632799 633085 -117229542 + AluSx SINE Alu 7 292 -20 991 163 180 85 chr9 633980 634121 -117228506 + MER2 DNA MER2_type 36 162 -183 1824 145 0 3 chr9 634121 634411 -117228216 + AluSx SINE Alu 1 289 -23 1865 74 0 8 chr9 634411 634668 -117227959 - AluY SINE Alu -55 256 1 991 163 180 85 chr9 634668 634808 -117227819 + MER2 DNA MER2_type 161 345 0 1615 142 42 21 chr9 634833 635121 -117227506 + AluJb SINE Alu 3 296 -16 500 266 97 7 chr9 636307 636461 -117226166 - MIR SINE MIR -75 187 20 194 133 67 22 chr9 637994 638039 -117224588 + L2 LINE L2 2677 2723 -591 1498 143 23 37 chr9 639735 639897 -117222730 - AluSx SINE Alu -16 296 138 2235 92 0 0 chr9 639897 640191 -117222436 - AluY SINE Alu -12 299 6 1498 143 23 37 chr9 640191 640328 -117222299 - AluSx SINE Alu -174 138 1 234 196 78 0 chr9 641764 641815 -117220812 - L1PA15-16 LINE L1 -6208 641 587 1628 151 36 4 chr9 641992 642271 -117220356 + AluJo SINE Alu 1 288 -24 2307 92 0 3 chr9 644869 645172 -117217455 - AluY SINE Alu -9 302 1 221 115 0 19 chr9 645723 645775 -117216852 + (GA)n Simple_repeat Simple_repeat 1 51 0 1635 186 20 0 chr9 646271 646567 -117216060 + AluJo SINE Alu 5 306 -6 713 180 0 43 chr9 646716 646855 -117215772 + FLAM_A SINE Alu 1 133 0 1419 129 126 16 chr9 647289 647567 -117215060 + AluSg SINE Alu 1 306 0 203 222 0 22 chr9 647577 647622 -117215005 - MER5A DNA MER1_type -108 81 38 646 226 97 0 chr9 649227 649422 -117213205 + L1ME3A LINE L1 5944 6157 -13 652 307 68 43 chr9 649616 650013 -117212614 + MLT1I LTR MaLR 3 409 0 664 181 22 14 chr9 650098 650236 -117212391 - MER105 DNA DNA -28 176 38 1065 190 16 0 chr9 650305 650489 -117212138 - MER5A DNA MER1_type -2 187 1 2273 100 0 0 chr9 650891 651192 -117211435 + AluSq SINE Alu 1 301 -12 2050 129 0 0 chr9 651781 652075 -117210552 - AluSx SINE Alu -17 295 2 1982 97 0 33 chr9 652296 652596 -117210031 + AluSx SINE Alu 1 290 -22 595 350 45 8 chr9 653151 653397 -117209230 - MLT1H LTR MaLR -273 276 22 1986 125 7 0 chr9 653798 654087 -117208540 - AluSx SINE Alu -21 291 1 2182 97 0 25 chr9 654894 655214 -117207413 - AluSx SINE Alu 0 312 1 2114 99 3 3 chr9 655488 655780 -117206847 - AluSg SINE Alu -15 295 4 197 273 13 39 chr9 655798 655875 -117206752 + L3 LINE CR1 1245 1319 -258 1977 122 7 7 chr9 656196 656499 -117206128 - AluSx SINE Alu -9 303 1 246 32 0 0 chr9 656629 656660 -117205967 + (TG)n Simple_repeat Simple_repeat 2 32 0 1013 177 74 5 chr9 656694 656897 -117205730 - AluJb SINE Alu -13 299 83 2061 189 16 2 chr9 657006 657430 -117205197 - L1MB4 LINE L1 0 6180 5751 1583 141 82 4 chr9 657445 657714 -117204913 - AluJb SINE Alu -22 290 1 665 254 78 20 chr9 657899 658143 -117204484 - MIR SINE MIR -3 259 2 1370 230 60 7 chr9 659262 659706 -117202921 - MLT2B1 LTR ERVL 0 520 1 323 305 29 0 chr9 660569 660674 -117201953 + L2 LINE L2 2560 2667 -647 2428 81 0 0 chr9 661563 661871 -117200756 + AluY SINE Alu 1 308 -3 1771 140 0 11 chr9 661913 662184 -117200443 + AluSx SINE Alu 1 268 -44 26 98 0 0 chr9 662215 662297 -117200330 + AT_rich Low_complexity Low_complexity 1 82 0 452 303 26 7 chr9 662761 662913 -117199714 + MIR SINE MIR 21 175 -87 758 136 0 0 chr9 663004 663114 -117199513 + AluSq/x SINE Alu 2 111 -202 4168 125 86 26 chr9 663116 663850 -117198777 + MER4E LTR ERV1 2 779 0 690 123 38 0 chr9 663850 663956 -117198671 + MER50 LTR ERV1 595 704 -30 30328 114 20 56 chr9 664880 671284 -117191343 + L1PA8 LINE L1 12 6172 0 2205 118 26 3 chr9 671441 671746 -117190881 + AluSx SINE Alu 1 312 0 261 0 0 0 chr9 671749 671778 -117190849 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 1823 109 13 63 chr9 671935 672237 -117190390 - AluSx SINE Alu 0 312 26 1775 135 60 0 chr9 672297 672564 -117190063 + AluSq SINE Alu 21 303 -10 1121 146 0 0 chr9 672732 672896 -117189731 - AluSq SINE Alu -15 298 135 2140 131 0 0 chr9 672898 673188 -117189439 - AluSx SINE Alu -22 290 1 2036 132 7 0 chr9 673260 673549 -117189078 + AluSp SINE Alu 9 299 -14 264 30 0 0 chr9 673551 673584 -117189043 + (TA)n Simple_repeat Simple_repeat 1 33 0 656 209 67 53 chr9 673597 673757 -117188870 + MLT1E LTR MaLR 1 166 -427 1726 148 36 43 chr9 673757 674061 -117188566 - AluSx SINE Alu -10 302 1 656 209 67 53 chr9 674061 674125 -117188502 + MLT1E LTR MaLR 166 228 -365 1341 290 52 44 chr9 674148 674690 -117187937 + L1MA6 LINE L1 160 705 -6144 240 35 0 0 chr9 675016 675045 -117187582 + (CA)n Simple_repeat Simple_repeat 1 29 0 4016 219 57 26 chr9 675064 675704 -117186923 + L1MA6 LINE L1 1383 2002 -4847 1711 184 0 0 chr9 675704 675971 -117186656 + AluJb SINE Alu 1 267 -45 4016 219 57 26 chr9 675971 676161 -117186466 + L1MA6 LINE L1 2002 2185 -4664 1451 197 49 21 chr9 676161 676445 -117186182 + AluJo SINE Alu 1 292 -20 4016 219 57 26 chr9 676445 676752 -117185875 + L1MA6 LINE L1 2185 2556 -4293 12058 169 52 26 chr9 676762 678145 -117184482 + L1MA6 LINE L1 3434 4780 -2222 8892 50 8 2 chr9 678145 679208 -117183419 + MER11C LTR ERVK 1 1070 -1 12058 169 52 26 chr9 679208 679846 -117182781 + L1MA6 LINE L1 4780 5400 -1602 2196 124 0 7 chr9 679846 680144 -117182483 - AluSx SINE Alu -12 300 5 12058 169 52 26 chr9 680144 680588 -117182039 + L1MA6 LINE L1 5400 5831 -1171 2158 102 0 11 chr9 680588 680872 -117181755 - AluSx SINE Alu -31 281 1 12058 169 52 26 chr9 680872 681764 -117180863 + L1MA6 LINE L1 5831 7002 0 1316 150 184 83 chr9 681775 682182 -117180445 - LTR47A LTR ERVL 0 452 5 1155 229 62 13 chr9 682291 682597 -117180030 - L1MA6 LINE L1 -13 6287 5967 3375 168 66 138 chr9 682683 683066 -117179561 - MER21A LTR ERV1 -16 915 506 2347 102 0 7 chr9 683066 683371 -117179256 + AluSx SINE Alu 1 303 -9 3375 168 66 138 chr9 683371 683958 -117178669 - MER21A LTR ERV1 -425 506 15 1428 248 18 33 chr9 684541 684868 -117177759 + MLT1I LTR MaLR 9 330 -79 1236 220 40 24 chr9 684868 685164 -117177463 + AluJb SINE Alu 1 301 -11 1428 248 18 33 chr9 685164 685235 -117177392 + MLT1I LTR MaLR 330 401 -8 1596 174 32 76 chr9 685541 685765 -117176862 - MLT1B LTR MaLR 0 390 191 2122 109 24 0 chr9 685765 686058 -117176569 - AluSq SINE Alu -13 300 1 1596 174 32 76 chr9 686058 686241 -117176386 - MLT1B LTR MaLR -199 191 1 347 303 103 0 chr9 686843 686998 -117175629 + MIR SINE MIR 89 259 -3 2012 136 18 0 chr9 687443 687729 -117174898 + AluSc SINE Alu 1 291 -18 1921 172 13 0 chr9 687737 688067 -117174560 + AluJb SINE Alu 1 334 0 1545 158 71 128 chr9 688330 688694 -117173933 - MLT1C LTR MaLR -2 465 135 1850 137 34 10 chr9 688694 688987 -117173640 - AluJb SINE Alu -12 300 1 1545 158 71 128 chr9 688987 689115 -117173512 - MLT1C LTR MaLR -332 135 1 372 252 72 14 chr9 689228 689367 -117173260 - MIR SINE MIR -18 244 98 2181 98 3 20 chr9 689577 689874 -117172753 - AluSx SINE Alu -20 292 1 2300 84 3 0 chr9 690303 690589 -117172038 - AluSg SINE Alu -23 287 1 216 320 68 10 chr9 690793 691007 -117171620 - L2 LINE L2 -74 3198 3002 1512 147 9 0 chr9 691742 691960 -117170667 - AluJb SINE Alu -19 293 74 279 203 16 31 chr9 691960 692015 -117170612 + LTR67 LTR ERVL 494 549 -8 371 232 11 17 chr9 692120 692213 -117170414 - AluS SINE Alu -228 75 1 1140 166 5 0 chr9 692480 692667 -117169960 - MER5A DNA MER1_type 0 189 2 521 219 80 22 chr9 692712 692849 -117169778 + LTR67 LTR ERVL 405 549 -8 2313 104 0 16 chr9 693303 693619 -117169008 - AluSq SINE Alu -2 311 1 1872 109 106 0 chr9 694015 694280 -117168347 - AluSg SINE Alu -17 293 1 373 202 326 8 chr9 694443 694572 -117168055 + MER5B DNA MER1_type 5 174 -4 300 207 49 0 chr9 694580 694672 -117167955 - MIR SINE MIR -73 135 32 1163 186 0 69 chr9 694992 695176 -117167451 - AluJo SINE Alu -23 289 94 2393 88 0 0 chr9 695176 695471 -117167156 - AluSg SINE Alu -15 295 1 297 0 0 0 chr9 695471 695504 -117167123 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1163 186 0 69 chr9 695504 695565 -117167062 - AluJo SINE Alu -216 96 60 1900 136 11 7 chr9 695694 695981 -117166646 + AluSg SINE Alu 1 288 -22 2603 51 0 10 chr9 696016 696330 -117166297 - AluY SINE Alu 0 311 1 428 239 162 9 chr9 696391 696568 -117166059 - L1MC4a LINE L1 -219 5902 5708 2259 112 3 0 chr9 696571 696875 -117165752 + AluSx SINE Alu 1 305 -7 2558 48 0 0 chr9 697315 697610 -117165017 - AluY SINE Alu -16 295 1 338 266 70 8 chr9 697661 697789 -117164838 + L1ME4a LINE L1 5548 5683 -438 546 309 85 0 chr9 697789 698012 -117164615 + MIR SINE MIR 20 261 -1 21 36 0 0 chr9 698130 698158 -117164469 + AT_rich Low_complexity Low_complexity 1 28 0 1857 159 29 35 chr9 698236 698538 -117164089 - MER2 DNA MER2_type 0 344 43 2261 98 0 16 chr9 698538 698843 -117163784 + AluSx SINE Alu 1 300 -12 1857 159 29 35 chr9 698843 698886 -117163741 - MER2 DNA MER2_type -301 43 1 1753 144 4 4 chr9 699357 699621 -117163006 + AluSx SINE Alu 39 302 -10 1560 156 64 14 chr9 701712 701995 -117160632 - MLT1C LTR MaLR 0 467 171 2226 113 0 10 chr9 702010 702321 -117160306 - AluSx SINE Alu -4 308 1 283 254 56 16 chr9 702370 702496 -117160131 + L1ME4a LINE L1 5758 5888 -233 552 320 135 24 chr9 702571 703030 -117159597 + L2 LINE L2 2804 3313 0 2322 87 10 3 chr9 703040 703351 -117159276 + AluSq SINE Alu 1 313 0 1008 156 12 0 chr9 704111 704271 -117158356 - AluSg/x SINE Alu -8 304 143 434 154 121 0 chr9 704380 704457 -117158170 + MLT1A1 LTR MaLR 1 92 -273 2255 109 0 7 chr9 704457 704759 -117157868 + AluSq SINE Alu 1 300 -13 434 154 121 0 chr9 704759 704772 -117157855 + MLT1A1 LTR MaLR 92 102 -263 367 127 18 0 chr9 704805 704860 -117157767 + MSTD LTR MaLR 341 396 0 217 173 19 0 chr9 705049 705101 -117157526 + A-rich Low_complexity Low_complexity 6 58 0 618 221 128 0 chr9 705540 705735 -117156892 - MIR SINE MIR -35 227 8 1371 275 57 15 chr9 705838 706310 -117156317 + LTR33 LTR ERVL 24 515 -6 446 252 122 0 chr9 706653 706800 -117155827 + MIR SINE MIR 49 213 -49 1463 102 13 35 chr9 706807 707033 -117155594 + AluSc SINE Alu 81 301 -8 991 9 58 21 chr9 707109 707551 -117155076 + (TG)n Simple_repeat Simple_repeat 1 458 0 608 198 27 0 chr9 707591 707702 -117154925 + MER106B DNA MER1_type 42 155 -904 21 36 0 0 chr9 707705 707733 -117154894 + AT_rich Low_complexity Low_complexity 1 28 0 362 179 0 0 chr9 707812 707868 -117154759 + MLT1A2 LTR MaLR 1 56 -318 2580 59 0 0 chr9 707869 708172 -117154455 + AluSg SINE Alu 1 303 -7 803 213 63 19 chr9 708172 708379 -117154248 + MLT1A2 LTR MaLR 159 374 0 1629 170 21 24 chr9 708472 708760 -117153867 + AluJo SINE Alu 11 297 -15 1987 143 3 19 chr9 709307 709614 -117153013 - AluSx SINE Alu -10 302 1 254 323 104 53 chr9 709833 710170 -117152457 + L2 LINE L2 2945 3298 -15 198 103 0 0 chr9 710286 710315 -117152312 + (A)n Simple_repeat Simple_repeat 1 29 0 1829 284 59 38 chr9 710817 711525 -117151102 + L1MEd LINE L1 1 723 -5396 2189 127 0 19 chr9 711617 711933 -117150694 + AluSx SINE Alu 1 310 -2 516 130 0 0 chr9 711858 711935 -117150692 + Alu SINE Alu 236 312 0 2188 119 3 3 chr9 712065 712375 -117150252 + AluSx SINE Alu 1 310 -2 478 291 179 14 chr9 712533 712756 -117149871 + MIR SINE MIR 3 262 0 1517 185 35 3 chr9 712888 713175 -117149452 + AluJo SINE Alu 2 297 -15 2296 183 71 54 chr9 713235 713381 -117149246 + L1MD1 LINE L1 5061 5203 -1039 1675 167 0 26 chr9 713381 713687 -117148940 + AluJo SINE Alu 1 298 -14 2296 183 71 54 chr9 713687 713766 -117148861 + L1MD1 LINE L1 5203 5279 -963 2082 121 0 16 chr9 713766 714079 -117148548 - AluSx SINE Alu -4 308 1 1876 132 10 3 chr9 714081 714370 -117148257 - AluJb SINE Alu -9 303 13 2296 183 71 54 chr9 714370 714676 -117147951 + L1MD1 LINE L1 5279 5578 -664 2236 109 0 0 chr9 714676 714989 -117147638 - AluSq SINE Alu 0 313 1 2296 183 71 54 chr9 714989 715420 -117147207 + L1MD1 LINE L1 5578 6070 -172 1158 243 28 12 chr9 715210 715535 -117147092 + L1MB8 LINE L1 5843 6172 -6 * 1505 178 7 17 chr9 715551 715838 -117146789 + AluJo SINE Alu 11 294 -18 2185 98 0 0 chr9 715838 716124 -117146503 + AluSg SINE Alu 1 286 -24 2187 76 26 7 chr9 716138 716429 -117146198 + AluSg1 SINE Alu 1 300 -9 270 115 0 0 chr9 716429 716481 -117146146 + (TA)n Simple_repeat Simple_repeat 2 53 0 2187 76 26 7 chr9 716481 716492 -117146135 + AluSg1 SINE Alu 300 309 0 263 286 118 17 chr9 716827 716946 -117145681 - L2 LINE L2 -21 3251 3121 482 250 24 18 chr9 717744 717889 -117144738 + L1ME3 LINE L1 5998 6146 -16 1848 116 61 0 chr9 717889 718166 -117144461 - AluSx SINE Alu -18 294 1 482 250 24 18 chr9 718166 718184 -117144443 + L1ME3 LINE L1 6146 6162 0 644 130 43 9 chr9 718195 718310 -117144317 + L1MB3 LINE L1 6063 6181 -2 910 174 6 6 chr9 718368 718529 -117144098 + AluJb SINE Alu 1 161 -151 207 0 0 0 chr9 718554 718577 -117144050 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 503 300 62 12 chr9 718966 719126 -117143501 - MIR3 SINE MIR -9 199 32 1915 148 7 0 chr9 719223 719533 -117143094 - AluJo SINE Alu 0 312 1 2252 69 0 0 chr9 719568 719881 -117142746 - AluY SINE Alu 0 313 1 1492 191 68 3 chr9 719886 720195 -117142432 - L1MB8 LINE L1 -11 6167 5839 273 228 0 0 chr9 720248 720327 -117142300 + GA-rich Low_complexity Low_complexity 3 81 0 335 307 114 55 chr9 720383 720585 -117142042 - MIR SINE MIR -29 233 20 628 243 80 57 chr9 720747 721048 -117141579 + L1MC4a LINE L1 5697 6004 -1804 1996 136 3 0 chr9 721058 721366 -117141261 + AluSx SINE Alu 1 309 -3 194 264 28 42 chr9 721366 721438 -117141189 - L2 LINE L2 -20 3252 3182 1040 146 6 0 chr9 721475 721640 -117140987 - FRAM SINE Alu -15 161 1 252 161 0 61 chr9 722015 722209 -117140418 + AluJo SINE Alu 38 300 -2 436 280 84 0 chr9 722214 722357 -117140270 + MIR SINE MIR 47 201 -61 1778 174 7 0 chr9 722387 722691 -117139936 + AluJb SINE Alu 1 306 -6 953 197 55 24 chr9 723239 723493 -117139134 - MER58B DNA MER1_type 0 341 80 1334 126 37 5 chr9 723494 723709 -117138918 + AluJb SINE Alu 79 300 -12 1319 191 20 20 chr9 723712 724016 -117138611 + AluJb SINE Alu 1 304 -8 754 166 45 85 chr9 724128 724351 -117138276 - AluJo SINE Alu -11 301 88 2124 95 10 3 chr9 724351 724657 -117137970 - AluSx SINE Alu -4 308 1 449 140 40 30 chr9 724716 724816 -117137811 + MER53 DNA DNA 1 101 -88 245 363 0 7 chr9 724878 725024 -117137603 + C-rich Low_complexity Low_complexity 2 146 0 1471 132 8 31 chr9 726000 726257 -117136370 + AluSx SINE Alu 32 282 -30 2208 97 0 0 chr9 726899 727198 -117135429 + AluSc SINE Alu 1 299 -10 2094 117 0 0 chr9 727206 727505 -117135122 + AluSx SINE Alu 1 299 -13 2015 117 0 3 chr9 727540 727845 -117134782 + AluSx SINE Alu 3 306 0 1277 156 5 9 chr9 727862 728086 -117134541 + AluJb SINE Alu 1 223 -89 1795 57 0 4 chr9 728088 728315 -117134312 - AluY SINE Alu -85 226 1 1898 121 47 13 chr9 728372 728537 -117134090 - AluSx SINE Alu 0 312 131 1911 101 21 21 chr9 728537 728849 -117133778 - AluSx SINE Alu 0 312 2 1898 121 47 13 chr9 728849 728981 -117133646 - AluSx SINE Alu -181 131 5 2059 93 4 0 chr9 729143 729459 -117133168 + AluSg SINE Alu 1 317 0 2240 80 7 7 chr9 729463 729764 -117132863 + AluSc SINE Alu 1 301 -8 2417 37 0 7 chr9 729952 730247 -117132380 + AluY SINE Alu 6 298 -13 2162 96 6 10 chr9 730715 731028 -117131599 + AluSp SINE Alu 1 312 -1 794 313 64 0 chr9 731051 731284 -117131343 - MIR SINE MIR 0 262 15 331 262 121 56 chr9 731683 731929 -117130698 + L2 LINE L2 2735 2998 -274 763 214 26 0 chr9 732431 732585 -117130042 - MIR SINE MIR -26 236 79 1693 97 0 4 chr9 732699 732937 -117129690 + AluSq SINE Alu 1 237 -76 834 141 0 15 chr9 732937 733066 -117129561 + AluSg/x SINE Alu 168 294 -18 3210 176 71 69 chr9 733238 733379 -117129248 - L1MB7 LINE L1 -5 6179 6040 309 26 0 0 chr9 733379 733417 -117129210 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 2054 110 7 3 chr9 733420 733711 -117128916 - AluSc SINE Alu -17 292 1 1052 156 0 0 chr9 733714 733874 -117128753 - FRAM SINE Alu -6 160 1 3210 176 71 69 chr9 733874 734198 -117128429 - L1MB7 LINE L1 -146 6038 5716 2025 92 14 17 chr9 734198 734334 -117128293 + AluSq SINE Alu 1 136 -177 2244 94 3 0 chr9 734334 734633 -117127994 + AluSp SINE Alu 1 300 -13 2025 92 14 17 chr9 734633 734790 -117127837 + AluSq SINE Alu 136 293 -20 3210 176 71 69 chr9 734790 735111 -117127516 - L1MB7 LINE L1 -468 5716 5397 1712 159 28 0 chr9 735111 735400 -117127227 - AluJo SINE Alu -15 297 1 3210 176 71 69 chr9 735400 735561 -117127066 - L1MB7 LINE L1 -787 5397 5238 2090 125 3 0 chr9 735561 735873 -117126754 - AluSq SINE Alu 0 313 1 3210 176 71 69 chr9 735873 735964 -117126663 - L1MB7 LINE L1 -946 5238 5117 1918 136 3 3 chr9 735964 736266 -117126361 - AluSx SINE Alu -10 302 1 3210 176 71 69 chr9 736266 736311 -117126316 - L1MB7 LINE L1 -1067 5117 5074 2094 113 3 0 chr9 736511 736803 -117125824 - AluSx SINE Alu -17 295 3 2090 112 0 3 chr9 736805 737100 -117125527 - AluSg SINE Alu -16 294 1 2076 103 3 7 chr9 737102 737402 -117125225 - AluSq SINE Alu -14 299 1 1523 207 0 7 chr9 737713 737851 -117124776 + AluJo SINE Alu 1 138 -174 2300 74 0 0 chr9 737851 738147 -117124480 + AluY SINE Alu 1 296 -15 1523 207 0 7 chr9 738147 738312 -117124315 + AluJo SINE Alu 138 302 -10 396 0 0 0 chr9 739126 739170 -117123457 + (TG)n Simple_repeat Simple_repeat 2 45 0 405 139 93 0 chr9 739171 739257 -117123370 - L1ME2 LINE L1 -12 6152 6059 2365 69 0 3 chr9 740632 740936 -117121691 - AluSx SINE Alu -8 304 2 27 29 0 0 chr9 742952 742986 -117119641 + AT_rich Low_complexity Low_complexity 1 34 0 2355 80 0 6 chr9 743109 743423 -117119204 - AluSx SINE Alu 0 312 1 2006 124 7 0 chr9 743610 743909 -117118718 - AluSx SINE Alu -11 301 1 2041 113 7 10 chr9 744425 744734 -117117893 - AluSx SINE Alu -4 308 1 885 194 0 0 chr9 744981 745146 -117117481 - FRAM SINE Alu -11 165 1 332 224 116 68 chr9 745177 745324 -117117303 + MER5A DNA MER1_type 9 162 -27 183 237 17 51 chr9 745791 745850 -117116777 - MIR3 SINE MIR -18 190 134 795 234 66 5 chr9 746191 746388 -117116239 - MER3 DNA MER1_type 0 209 1 357 264 28 38 chr9 746619 746725 -117115902 + MIR3 SINE MIR 69 173 -35 2210 119 0 3 chr9 746945 747256 -117115371 - AluSx SINE Alu -2 310 1 493 289 76 25 chr9 747448 747645 -117114982 - MIR SINE MIR -54 208 2 2063 93 21 3 chr9 748231 748520 -117114107 - AluSp SINE Alu -19 294 1 2315 104 0 0 chr9 749148 749457 -117113170 + AluSx SINE Alu 1 309 -3 2082 128 3 0 chr9 749635 749939 -117112688 - AluSx SINE Alu -7 305 1 2051 100 17 0 chr9 750339 750638 -117111989 - AluSx SINE Alu -8 304 1 1681 153 23 17 chr9 751488 751788 -117110839 - L1MC1 LINE L1 -16 6317 6016 33 25 0 0 chr9 751837 751877 -117110750 + AT_rich Low_complexity Low_complexity 1 40 0 1454 140 21 103 chr9 751877 752206 -117110421 - AluYb8 SINE Alu -16 302 1 1484 154 3 55 chr9 752207 752499 -117110128 - AluJo SINE Alu -22 290 14 964 144 0 20 chr9 752514 752667 -117109960 - FRAM SINE Alu -11 165 16 1357 141 14 0 chr9 752691 752904 -117109723 - AluSg/x SINE Alu -15 295 80 2354 58 0 7 chr9 753174 753468 -117109159 - AluY SINE Alu -19 292 1 295 297 123 22 chr9 753755 753893 -117108734 + L2 LINE L2 3162 3313 0 1633 159 10 7 chr9 754025 754320 -117108307 - AluJo SINE Alu -16 296 1 2352 72 0 0 chr9 754326 754616 -117108011 - AluSx SINE Alu -20 292 3 2608 196 77 15 chr9 754666 755273 -117107354 - L1MB7 LINE L1 -20 6164 5520 1995 110 28 0 chr9 755434 755716 -117106911 + AluSx SINE Alu 1 290 -22 190 116 47 0 chr9 755716 755759 -117106868 + (TA)n Simple_repeat Simple_repeat 1 45 0 4109 31 0 0 chr9 756027 756506 -117106121 - L1PA4 LINE L1 0 6155 5677 23 33 0 0 chr9 756914 756944 -117105683 + AT_rich Low_complexity Low_complexity 1 30 0 963 147 47 47 chr9 756947 756993 -117105634 - L1MB4 LINE L1 0 6180 6135 2029 90 75 0 chr9 756993 757272 -117105355 + AluSq SINE Alu 1 300 -13 219 36 0 0 chr9 757272 757300 -117105327 + (TA)n Simple_repeat Simple_repeat 2 29 0 963 147 47 47 chr9 757300 757443 -117105184 - L1MB4 LINE L1 -43 6137 5990 2305 77 0 13 chr9 758420 758732 -117103895 + AluSx SINE Alu 5 312 0 1031 248 74 60 chr9 758889 759321 -117103306 - L2 LINE L2 -1 3312 2875 9401 57 12 81 chr9 759457 760904 -117101723 - SVA Other Other 0 1386 40 240 35 0 0 chr9 760913 760942 -117101685 + (AGGGGG)n Simple_repeat Simple_repeat 3 31 0 1900 221 72 70 chr9 761242 761436 -117101191 + MLT1E2 LTR MaLR 2 194 -432 1573 181 7 16 chr9 761436 761739 -117100888 + AluJo SINE Alu 3 302 -10 1900 221 72 70 chr9 761739 762168 -117100459 + MLT1E2 LTR MaLR 194 626 0 508 190 60 9 chr9 762172 762288 -117100339 - L1MB7 LINE L1 -2374 5434 5313 286 313 55 16 chr9 762373 762501 -117100126 - L2 LINE L2 -1099 2215 2083 1891 119 51 0 chr9 762599 762894 -117099733 - AluSx SINE Alu -2 310 1 2443 67 0 7 chr9 762901 763198 -117099429 - AluY SINE Alu -13 298 4 271 285 97 24 chr9 763653 763802 -117098825 + MIR SINE MIR 18 185 -64 2396 98 0 0 chr9 764283 764588 -117098039 + AluSx SINE Alu 1 305 -7 468 295 109 19 chr9 765876 766086 -117096541 - MIR SINE MIR -12 250 22 2007 125 17 3 chr9 766390 766679 -117095948 - AluJb SINE Alu -19 293 1 1893 175 0 3 chr9 767129 767438 -117095189 + AluJb SINE Alu 1 308 -4 2299 91 0 3 chr9 768518 768830 -117093797 + AluSq SINE Alu 2 312 0 1673 163 31 17 chr9 769111 769405 -117093222 - AluJb SINE Alu -10 302 5 1536 157 48 11 chr9 769459 769727 -117092900 - AluJb SINE Alu -34 278 1 2327 57 3 30 chr9 769740 770041 -117092586 - AluY SINE Alu -18 293 1 1200 45 0 0 chr9 770041 770175 -117092452 - AluY SINE Alu -177 134 1 2310 199 127 16 chr9 770420 770472 -117092155 - L1MB7 LINE L1 0 6184 6139 2310 79 0 3 chr9 770472 770762 -117091865 - AluSg SINE Alu -21 289 1 2310 199 127 16 chr9 770762 771291 -117091336 - L1MB7 LINE L1 -45 6139 5538 1049 157 47 5 chr9 771314 771505 -117091122 - MLT2B3 LTR ERVL -355 199 1 781 178 16 26 chr9 771505 771696 -117090931 - L1MB7 LINE L1 -717 5467 5279 2283 81 0 42 chr9 771712 772020 -117090607 - AluSq SINE Alu -18 295 1 196 289 125 20 chr9 772319 772471 -117090156 + L3b LINE CR1 1179 1346 -237 2441 81 0 10 chr9 773203 773511 -117089116 - AluY SINE Alu -6 305 1 250 140 53 0 chr9 774164 774221 -117088406 + (TATG)n Simple_repeat Simple_repeat 3 62 0 1696 177 7 10 chr9 774930 775229 -117087398 - AluJo SINE Alu -12 300 3 293 203 76 0 chr9 777151 777230 -117085397 - MIR SINE MIR 0 262 178 5078 197 63 79 chr9 777576 778846 -117083781 - Charlie1a DNA MER1_type -1311 1450 206 2340 110 7 0 chr9 778846 779155 -117083472 + AluSx SINE Alu 1 311 -1 5078 197 63 79 chr9 779155 779358 -117083269 - Charlie1a DNA MER1_type -2555 206 1 285 289 0 25 chr9 779436 779557 -117083070 - MER5B DNA MER1_type -60 118 1 2267 100 6 10 chr9 781162 781473 -117081154 - AluSq SINE Alu -3 310 1 1851 136 17 10 chr9 781913 782208 -117080419 + AluJo SINE Alu 3 299 -13 2280 93 3 13 chr9 783090 783390 -117079237 + AluSx SINE Alu 1 297 -15 3981 163 35 49 chr9 783431 784227 -117078400 - LTR1 LTR ERV1 0 785 1 2108 110 13 10 chr9 784648 784957 -117077670 - AluSx SINE Alu -2 310 1 24 32 0 0 chr9 785071 785102 -117077525 + AT_rich Low_complexity Low_complexity 1 31 0 1069 107 6 47 chr9 785442 785611 -117077016 + AluSq SINE Alu 133 294 -19 241 180 0 20 chr9 786482 786532 -117076095 + L2 LINE L2 3263 3311 -2 1841 143 27 7 chr9 786701 787001 -117075626 - AluJb SINE Alu -6 306 1 795 189 16 63 chr9 787214 787246 -117075381 - MER5A DNA MER1_type -7 182 150 888 133 0 15 chr9 787246 787381 -117075246 + FLAM_C SINE Alu 1 133 0 795 189 16 63 chr9 787381 787539 -117075088 - MER5A DNA MER1_type -39 150 1 814 138 57 13 chr9 788488 788647 -117073980 - FRAM SINE Alu 0 166 1 2117 107 0 49 chr9 789105 789432 -117073195 - AluSx SINE Alu -1 311 1 895 147 0 14 chr9 789459 789602 -117073025 + FLAM_C SINE Alu 1 141 -2 1660 141 0 16 chr9 789622 789877 -117072750 + AluSx SINE Alu 57 307 -5 2143 111 0 32 chr9 789910 790225 -117072402 - AluY SINE Alu -6 305 1 218 200 150 0 chr9 790295 790355 -117072272 - L2 LINE L2 -9 3263 3195 427 257 46 4 chr9 791661 791811 -117070816 + MER58A DNA MER1_type 1 216 -8 315 303 0 10 chr9 792641 792740 -117069887 + (CA)n Simple_repeat Simple_repeat 1 98 0 222 62 0 0 chr9 793188 793220 -117069407 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2205 104 0 3 chr9 793228 793516 -117069111 - AluSx SINE Alu -25 287 1 216 268 94 71 chr9 793672 793799 -117068828 + L3 LINE CR1 1445 1574 -3 1649 137 13 48 chr9 793923 794203 -117068424 - L1MA9 LINE L1 -1 6311 6042 2395 83 0 0 chr9 794203 794504 -117068123 - AluSc SINE Alu -8 301 1 1649 137 13 48 chr9 794504 794538 -117068089 - L1MA9 LINE L1 -270 6042 6008 1189 102 60 0 chr9 794682 794848 -117067779 - AluSg/x SINE Alu -4 306 131 350 195 78 0 chr9 794848 794925 -117067702 - L1MA9 LINE L1 -296 6016 5934 2344 98 0 0 chr9 794934 795229 -117067398 + AluSg SINE Alu 1 295 -15 2020 88 0 22 chr9 795492 795802 -117066825 - AluSc SINE Alu 0 319 16 660 131 0 0 chr9 795912 796011 -117066616 + FRAM SINE Alu 66 164 -12 2211 118 3 13 chr9 796505 796820 -117065807 - AluSx SINE Alu 0 312 1 1372 133 90 8 chr9 797260 797516 -117065111 - L1 LINE L1 -1577 4569 4293 1648 161 20 43 chr9 799088 799393 -117063234 - AluJo SINE Alu -14 298 1 1860 165 3 19 chr9 799402 799718 -117062909 - AluJb SINE Alu -1 311 1 2440 84 0 0 chr9 799720 800028 -117062599 - AluSx SINE Alu -4 308 1 2391 75 10 0 chr9 800313 800606 -117062021 - AluSx SINE Alu -11 301 6 2175 121 0 7 chr9 800893 801190 -117061437 - AluSx SINE Alu -17 295 1 194 158 0 0 chr9 802965 803003 -117059624 - L2 LINE L2 -20 3252 3215 2321 84 10 0 chr9 803064 803360 -117059267 + AluSp SINE Alu 1 299 -14 543 247 102 24 chr9 803464 803630 -117058997 - MER97a DNA MER1_type? -715 179 1 327 25 0 0 chr9 803876 803916 -117058711 + (TG)n Simple_repeat Simple_repeat 1 40 0 256 283 34 0 chr9 804188 804296 -117058331 - MIR SINE MIR -62 146 31 294 50 0 0 chr9 804422 804462 -117058165 + (CA)n Simple_repeat Simple_repeat 2 41 0 388 256 62 74 chr9 806013 806189 -117056438 + MER112 DNA MER1_type 3 176 -84 261 0 0 0 chr9 806231 806260 -117056367 + (TG)n Simple_repeat Simple_repeat 2 30 0 1804 155 7 17 chr9 806572 806863 -117055764 + AluJo SINE Alu 1 288 -24 1734 180 7 7 chr9 808110 808415 -117054212 - AluJb SINE Alu -7 305 1 702 260 18 27 chr9 809496 809715 -117052912 - MER20 DNA MER1_type -2 217 1 2355 98 7 3 chr9 809882 810189 -117052438 - AluSx SINE Alu 0 312 5 1673 154 44 65 chr9 810355 810738 -117051889 - THE1C LTR MaLR 0 375 1 549 220 54 30 chr9 811164 811332 -117051295 + MER5B DNA MER1_type 1 172 -6 348 137 61 34 chr9 811348 811474 -117051153 + MER58 DNA MER1_type 169 2420 0 1894 135 11 0 chr9 812015 812297 -117050330 + AluSx SINE Alu 1 285 -27 2572 66 0 0 chr9 812694 812998 -117049629 + AluY SINE Alu 1 304 -7 27 29 0 0 chr9 814113 814147 -117048480 + AT_rich Low_complexity Low_complexity 1 34 0 2313 87 0 3 chr9 814147 814434 -117048193 - AluY SINE Alu -25 286 1 199 328 52 17 chr9 814454 814570 -117048057 - MIR SINE MIR -79 183 64 1742 178 0 17 chr9 814775 815073 -117047554 - AluJo SINE Alu -19 293 1 3605 246 51 54 chr9 817927 819251 -117043376 - L2 LINE L2 -457 2857 1537 396 220 220 0 chr9 819231 819404 -117043223 + MER5C DNA MER1_type 11 221 -103 * 3653 145 73 16 chr9 819409 820056 -117042571 - L1MB5 LINE L1 0 6174 5491 1136 130 52 42 chr9 820077 820269 -117042358 + AluJo SINE Alu 85 278 -34 1639 176 8 0 chr9 820313 820580 -117042047 - AluJb SINE Alu -43 269 1 448 195 0 76 chr9 820600 820718 -117041909 + MER5C DNA MER1_type 215 323 -1 240 190 103 0 chr9 820720 820778 -117041849 - L2 LINE L2 -1750 1564 1501 229 253 67 67 chr9 821553 821628 -117040999 - MIR3 SINE MIR -18 190 116 2185 120 0 0 chr9 822472 822773 -117039854 - AluSx SINE Alu -11 301 1 207 211 0 0 chr9 824041 824079 -117038548 + T-rich Low_complexity Low_complexity 3 40 0 309 224 214 0 chr9 824108 824206 -117038421 - MIR SINE MIR -34 228 110 279 0 0 0 chr9 825089 825120 -117037507 + (GA)n Simple_repeat Simple_repeat 2 32 0 596 166 103 34 chr9 827104 827230 -117035397 - MER53 DNA DNA -1 188 72 350 0 44 0 chr9 827230 827275 -117035352 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1858 134 0 4 chr9 827278 827540 -117035087 - AluSx SINE Alu -51 261 1 596 166 103 34 chr9 827540 827584 -117035043 - MER53 DNA DNA -118 71 2 640 134 0 10 chr9 827701 827798 -117034829 - FLAM_A SINE Alu -12 130 35 1375 153 27 135 chr9 828617 828818 -117033809 - AluJo SINE Alu -14 298 146 2409 69 10 0 chr9 828818 829109 -117033518 - AluY SINE Alu -17 294 1 1375 153 27 135 chr9 829109 829241 -117033386 - AluJo SINE Alu -166 146 1 2208 163 39 5 chr9 829250 829636 -117032991 - L1MB7 LINE L1 0 6184 5786 1394 166 101 93 chr9 829874 830259 -117032368 - MLT1B LTR MaLR -2 388 1 180 0 0 0 chr9 830568 830588 -117032039 + (CATTT)n Simple_repeat Simple_repeat 2 21 0 1266 217 50 34 chr9 830968 831290 -117031337 - MER21B LTR ERV1 -124 739 413 2282 94 0 13 chr9 831316 831614 -117031013 - AluSx SINE Alu -14 298 5 878 210 24 54 chr9 831617 831822 -117030805 - MER21B LTR ERV1 -664 199 1 755 235 96 0 chr9 832013 832200 -117030427 - MER3 DNA MER1_type 0 209 5 623 204 0 72 chr9 832602 832783 -117029844 - L1MB7 LINE L1 -893 5253 5086 1009 169 0 12 chr9 832785 832945 -117029682 + FRAM SINE Alu 1 157 -19 919 165 20 42 chr9 832964 833178 -117029449 - L1M4 LINE L1 -1055 5091 4867 2337 86 3 7 chr9 834871 835172 -117027455 + AluSq SINE Alu 1 300 -13 5255 189 57 13 chr9 835215 837302 -117025325 - L1MB4 LINE L1 0 6180 3989 2605 176 6 6 chr9 838279 838762 -117023865 + L1M3 LINE L1 5310 5792 -388 * 4310 164 55 37 chr9 838755 840127 -117022500 + L1MB3 LINE L1 4787 6183 0 600 308 50 32 chr9 840147 840649 -117021978 - L1MB4 LINE L1 -2203 3943 3416 1865 169 3 0 chr9 840672 840974 -117021653 - AluJb SINE Alu -9 303 1 181 339 62 0 chr9 841309 841374 -117021253 - MIR SINE MIR -162 100 32 413 274 58 58 chr9 842363 842622 -117020005 + MIR SINE MIR 2 260 -2 2075 120 0 14 chr9 843541 843857 -117018770 - AluSx SINE Alu 0 312 1 367 290 166 50 chr9 844323 844788 -117017839 - L1MC4a LINE L1 -1877 5931 5413 1557 122 32 5 chr9 845554 845775 -117016852 - MER30 DNA MER1_type 0 230 4 184 234 78 47 chr9 845956 846020 -117016607 - MIR3 SINE MIR -1 207 142 736 102 0 0 chr9 846021 846119 -117016508 - AluSg/x SINE Alu -8 304 207 317 54 161 18 chr9 846120 846176 -117016451 - MIR SINE MIR -55 153 90 1993 150 17 0 chr9 847180 847305 -117015322 + AluSx SINE Alu 6 127 -185 387 0 0 0 chr9 847305 847348 -117015279 + (TAA)n Simple_repeat Simple_repeat 2 44 0 1993 150 17 0 chr9 847348 847516 -117015111 + AluSx SINE Alu 127 304 -8 1317 155 163 26 chr9 847525 847789 -117014838 + AluJo SINE Alu 2 301 -1 3772 170 28 21 chr9 847794 848513 -117014114 - L1MA10 LINE L1 -7 6327 5604 486 249 191 11 chr9 848813 849002 -117013625 + MIR SINE MIR 40 262 0 33 25 0 0 chr9 849586 849626 -117013001 + AT_rich Low_complexity Low_complexity 1 40 0 505 309 124 5 chr9 850335 850545 -117012082 - MIR SINE MIR -8 254 20 385 272 54 0 chr9 850550 850642 -117011985 + L2 LINE L2 3168 3264 -8 2200 103 20 0 chr9 853040 853341 -117009286 - AluSg SINE Alu -3 307 1 230 282 24 12 chr9 853359 853444 -117009183 - L2 LINE L2 -1030 2284 2199 1716 163 14 7 chr9 853829 854112 -117008515 + AluJb SINE Alu 6 290 -22 3690 151 44 27 chr9 854140 854817 -117007810 + L1MB3 LINE L1 5450 6138 -45 1171 144 0 0 chr9 854819 854993 -117007634 + FRAM SINE Alu 1 174 -2 22 0 0 0 chr9 855121 855143 -117007484 + AT_rich Low_complexity Low_complexity 1 22 0 1304 127 84 14 chr9 855341 855554 -117007073 - L1PA16 LINE L1 0 6166 5939 2033 143 3 0 chr9 856129 856436 -117006191 + AluSx SINE Alu 1 308 -4 2118 122 0 3 chr9 856774 857069 -117005558 - AluSx SINE Alu -18 294 1 2160 122 3 0 chr9 857925 858229 -117004398 - AluSx SINE Alu -7 305 1 212 246 138 0 chr9 858335 858400 -117004227 - L2 LINE L2 -2 3270 3197 292 237 92 0 chr9 858921 858997 -117003630 - MIR SINE MIR -75 187 105 384 199 32 12 chr9 859448 859556 -117003071 - MIR SINE MIR -61 147 36 284 262 37 0 chr9 860284 860362 -117002265 - MIR SINE MIR -58 150 76 194 0 0 37 chr9 860947 860974 -117001653 + (GGGTG)n Simple_repeat Simple_repeat 5 30 0 457 324 62 6 chr9 863150 863326 -116999301 - L1ME LINE L1 -462 5659 5474 23 0 0 0 chr9 864744 864767 -116997860 + AT_rich Low_complexity Low_complexity 1 23 0 205 161 0 0 chr9 866341 866372 -116996255 + polypyrimidine Low_complexity Low_complexity 1 31 0 23 33 0 0 chr9 866917 866947 -116995680 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr9 869275 869296 -116993331 + GC_rich Low_complexity Low_complexity 1 21 0 1839 101 63 7 chr9 869554 869840 -116992787 + AluSx SINE Alu 3 304 -8 208 53 53 0 chr9 873885 873923 -116988704 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 201 288 18 45 chr9 874917 875028 -116987599 + G-rich Low_complexity Low_complexity 3 110 0 326 222 9 19 chr9 875690 875798 -116986829 + (CCG)n Simple_repeat Simple_repeat 3 109 0 238 152 0 0 chr9 878986 879032 -116983595 - LTR66 LTR ERVL -168 442 397 437 209 9 9 chr9 880435 880540 -116982087 + MER53 DNA DNA 84 188 -1 229 220 17 17 chr9 881209 881268 -116981359 + CT-rich Low_complexity Low_complexity 3 61 0 220 299 46 46 chr9 881939 882026 -116980601 + L2 LINE L2 3186 3272 0 2081 88 10 10 chr9 882861 883158 -116979469 - AluY SINE Alu -14 297 1 2153 105 0 0 chr9 885012 885307 -116977320 + AluSg SINE Alu 1 295 -15 2852 137 46 0 chr9 885435 885814 -116976813 - L1MB3 LINE L1 -1 6182 5775 405 0 0 0 chr9 885814 885859 -116976768 + (TG)n Simple_repeat Simple_repeat 2 46 0 2852 137 46 0 chr9 885859 885955 -116976672 - L1MB3 LINE L1 -408 5775 5685 319 214 0 0 chr9 890333 890389 -116972238 - L2 LINE L2 0 3272 3217 1646 182 34 0 chr9 891202 891493 -116971134 + AluJb SINE Alu 1 301 -11 2263 107 0 0 chr9 891955 892263 -116970364 + AluSx SINE Alu 1 308 -4 239 310 200 0 chr9 892794 892939 -116969688 + MER5A DNA MER1_type 10 183 -6 365 361 67 0 chr9 894610 894790 -116967837 + MER91A DNA MER1_type 4 195 -1 2267 102 0 0 chr9 895230 895534 -116967093 - AluSc SINE Alu -5 304 1 2093 96 7 0 chr9 895867 896202 -116966425 + AluSq SINE Alu 1 313 0 1533 156 23 0 chr9 896288 896544 -116966083 + AluJo SINE Alu 1 262 -50 601 209 155 39 chr9 896554 896760 -116965867 - MIR SINE MIR 0 262 33 196 333 25 37 chr9 897860 897941 -116964686 - MER5A DNA MER1_type -29 160 81 201 149 0 64 chr9 898415 898462 -116964165 + (GGAGAA)n Simple_repeat Simple_repeat 4 47 0 370 200 44 0 chr9 899243 899333 -116963294 - MER53 DNA DNA -15 174 81 279 0 0 0 chr9 899341 899372 -116963255 + (TG)n Simple_repeat Simple_repeat 2 32 0 499 163 24 65 chr9 899473 899596 -116963031 - MER53 DNA DNA -71 118 1 508 260 46 35 chr9 899677 899850 -116962777 + Charlie8 DNA MER1_type 2 176 -2241 237 238 32 16 chr9 900106 900169 -116962458 + MIR SINE MIR 85 148 -60 619 158 10 0 chr9 900264 900365 -116962262 - U6 snRNA snRNA -5 102 1 319 188 58 0 chr9 900567 900636 -116961991 - MLT1I LTR MaLR -11 398 326 1773 126 33 4 chr9 900700 900970 -116961657 - AluSx SINE Alu -12 300 23 293 287 53 0 chr9 901067 901161 -116961466 - MLT1J2 LTR MaLR -306 144 46 2170 107 3 0 chr9 901393 901692 -116960935 - AluSq SINE Alu -13 300 1 258 254 0 0 chr9 901713 901772 -116960855 - MIR SINE MIR -58 204 146 1636 170 0 56 chr9 902516 902839 -116959788 - AluJb SINE Alu -7 305 1 779 266 71 77 chr9 902857 903466 -116959161 - L1MC4a LINE L1 -1845 5963 5359 1763 152 0 23 chr9 903901 904210 -116958417 + AluJb SINE Alu 1 302 -10 451 290 127 56 chr9 904211 904769 -116957858 - L1MC5 LINE L1 -38 7923 7326 233 198 23 70 chr9 904975 905018 -116957609 - L1MC4 LINE L1 -835 7207 7168 2185 87 13 10 chr9 905018 905327 -116957300 - AluSx SINE Alu -1 311 2 233 198 23 70 chr9 905327 905369 -116957258 - L1MC4 LINE L1 -874 7168 7126 641 279 153 5 chr9 906265 906480 -116956147 + MIR SINE MIR 3 249 -13 4924 121 16 15 chr9 906705 907500 -116955127 + L1MA4A LINE L1 5507 6302 -1 371 253 40 0 chr9 908335 908434 -116954193 + MER5A DNA MER1_type 13 115 -74 468 257 48 0 chr9 908493 908598 -116954029 + MER5B DNA MER1_type 1 110 -68 1505 187 3 20 chr9 909028 909327 -116953300 - AluJo SINE Alu -18 294 1 310 258 0 0 chr9 909331 909393 -116953234 + MER5A DNA MER1_type 128 189 0 2040 103 0 48 chr9 909794 910105 -116952522 - AluSx SINE Alu -16 296 1 499 237 8 38 chr9 910716 910847 -116951780 - Charlie8 DNA MER1_type -2214 203 77 192 77 0 0 chr9 910857 910883 -116951744 + (A)n Simple_repeat Simple_repeat 1 26 0 2230 85 3 0 chr9 911005 911298 -116951329 + AluSx SINE Alu 1 294 -18 497 251 71 51 chr9 911802 912113 -116950514 + HAL1b LINE L1 658 974 -374 3407 233 40 7 chr9 912236 913124 -116949503 - L1ME3A LINE L1 -18 6152 5237 2106 266 74 17 chr9 913186 913815 -116948812 - L1ME3A LINE L1 -1121 5025 4343 2058 128 0 0 chr9 913815 914113 -116948514 + AluJb SINE Alu 1 298 -14 2106 266 74 17 chr9 914113 914254 -116948373 - L1ME3A LINE L1 -1803 4343 4211 55 0 0 0 chr9 914588 914643 -116947984 + AT_rich Low_complexity Low_complexity 1 55 0 2021 112 3 3 chr9 914643 914937 -116947690 - AluSx SINE Alu -18 294 1 1874 150 0 0 chr9 914946 915233 -116947394 - AluSx SINE Alu -25 287 1 2216 178 22 10 chr9 915243 915805 -116946822 - L1M4 LINE L1 -704 5480 4911 457 303 198 17 chr9 916941 917103 -116945524 - L2 LINE L2 -1 3271 3140 1916 112 11 4 chr9 917103 917371 -116945256 + AluSq SINE Alu 1 270 -43 457 303 198 17 chr9 917371 917672 -116944955 - L2 LINE L2 -132 3140 2709 1809 159 18 0 chr9 918677 918960 -116943667 - AluJb SINE Alu -24 288 1 223 156 67 0 chr9 919132 919177 -116943450 - L2 LINE L2 -93 3220 3173 582 281 95 33 chr9 920039 920281 -116942346 + MIR SINE MIR 6 262 0 3051 201 60 31 chr9 920421 920583 -116942044 - L1ME1 LINE L1 -126 6040 5884 2260 122 0 0 chr9 920583 920878 -116941749 - AluSx SINE Alu -17 295 1 3051 201 60 31 chr9 920878 921530 -116941097 - L1ME1 LINE L1 -282 5884 5200 234 278 204 12 chr9 922206 922368 -116940259 - MIR SINE MIR -58 204 12 2073 140 3 0 chr9 923123 923415 -116939212 + AluSx SINE Alu 1 293 -19 222 80 60 0 chr9 924288 924338 -116938289 + CT-rich Low_complexity Low_complexity 1 53 0 1702 167 14 24 chr9 924338 924626 -116938001 - AluJb SINE Alu -27 285 1 398 279 84 19 chr9 924687 924841 -116937786 - L1ME LINE L1 -345 5776 5613 687 217 24 18 chr9 924846 925012 -116937615 + MIR SINE MIR 75 241 -21 2239 117 0 7 chr9 925634 925932 -116936695 - AluSx SINE Alu -16 296 1 658 291 78 21 chr9 926274 926720 -116935907 - L1MC/D LINE L1 -328 5793 5337 231 197 13 26 chr9 926799 926875 -116935752 + CT-rich Low_complexity Low_complexity 2 76 0 861 191 33 6 chr9 928652 928835 -116933792 + MER5A DNA MER1_type 2 189 0 1564 184 28 31 chr9 928902 929256 -116933371 - L1MA9 LINE L1 -2 6310 5958 186 287 223 0 chr9 929285 929379 -116933248 - MIR SINE MIR -121 141 27 1993 112 64 14 chr9 929402 929697 -116932930 + AluSx SINE Alu 1 310 -2 530 208 69 39 chr9 929786 929916 -116932711 - MER63A DNA MER1_type -1 209 76 292 175 15 153 chr9 931272 931351 -116931276 + L1ME2 LINE L1 6038 6092 -72 1574 194 17 10 chr9 931351 931644 -116930983 + AluJb SINE Alu 1 295 -17 292 175 15 153 chr9 931644 931701 -116930926 + L1ME2 LINE L1 6092 6155 -9 222 185 19 0 chr9 932251 932305 -116930322 + MIR3 SINE MIR 153 207 -1 1932 139 33 3 chr9 933208 933510 -116929117 - AluJb SINE Alu -1 311 1 368 231 108 0 chr9 933600 933730 -116928897 - MER117 DNA MER1_type -50 147 4 295 155 0 34 chr9 934090 934162 -116928465 + Alu SINE Alu 244 302 0 1738 172 37 3 chr9 934335 934631 -116927996 - AluJb SINE Alu -6 306 1 410 310 43 27 chr9 934949 935133 -116927494 + MIR SINE MIR 11 197 -65 256 86 0 0 chr9 935184 935219 -116927408 - U2 snRNA snRNA -153 35 1 521 278 98 8 chr9 935333 935597 -116927030 + L2 LINE L2 2719 3017 -296 37 62 0 0 chr9 935663 935728 -116926899 + AT_rich Low_complexity Low_complexity 1 65 0 1879 164 3 13 chr9 938924 939236 -116923391 - AluJb SINE Alu -3 309 1 291 268 0 0 chr9 940079 940150 -116922477 - MIR SINE MIR -110 152 82 200 216 134 82 chr9 941687 941784 -116920843 - MIR3 SINE MIR -54 154 53 258 290 11 32 chr9 942683 942776 -116919851 - MIR3 SINE MIR -35 173 83 22 0 0 0 chr9 942830 942852 -116919775 + GC_rich Low_complexity Low_complexity 1 22 0 2611 32 3 10 chr9 943558 943869 -116918758 - AluY SINE Alu -2 309 1 24 0 0 0 chr9 944869 944893 -116917734 + AT_rich Low_complexity Low_complexity 1 24 0 1567 130 0 20 chr9 944984 945238 -116917389 - AluJb SINE Alu -34 278 30 210 209 0 90 chr9 945318 945385 -116917242 + G-rich Low_complexity Low_complexity 6 66 0 268 180 107 41 chr9 945764 945886 -116916741 - MIR SINE MIR -98 164 35 211 280 97 21 chr9 947158 947251 -116915376 + MIR SINE MIR 108 207 -55 218 111 0 44 chr9 947687 947732 -116914895 - L2 LINE L2 -9 3304 3262 26 64 0 0 chr9 950059 950106 -116912521 + GC_rich Low_complexity Low_complexity 1 47 0 233 270 0 0 chr9 950106 950180 -116912447 + (CGA)n Simple_repeat Simple_repeat 2 75 0 1030 133 0 0 chr9 950465 950608 -116912019 - AluSg SINE Alu -165 145 3 335 278 9 26 chr9 950806 950921 -116911706 - L1MC4a LINE L1 -1866 5942 5830 252 308 11 0 chr9 950961 951052 -116911575 - MIR3 SINE MIR -28 180 89 217 204 20 0 chr9 951226 951275 -116911352 - MIR SINE MIR -125 137 88 278 332 58 13 chr9 952528 952809 -116909818 + L3 LINE CR1 1075 1416 -161 193 296 74 25 chr9 952930 953011 -116909616 - MER5B DNA MER1_type -72 106 22 209 196 0 39 chr9 953427 953478 -116909149 - MIR3 SINE MIR -13 195 147 230 339 16 0 chr9 953483 953545 -116909082 - MIR SINE MIR -112 96 34 389 337 17 6 chr9 954030 954202 -116908425 - MER5A DNA MER1_type -9 180 7 346 276 142 0 chr9 955541 955766 -116906861 - L1MC4a LINE L1 -1847 5961 5705 629 226 25 25 chr9 956039 956198 -116906429 + L1ME1 LINE L1 5938 6096 -70 * 1392 194 39 51 chr9 956192 956548 -116906079 + L1MA10 LINE L1 5976 6327 -7 302 127 0 0 chr9 956573 956628 -116905999 + L1MB8 LINE L1 6108 6162 -16 198 0 0 0 chr9 957742 957764 -116904863 + (T)n Simple_repeat Simple_repeat 1 22 0 259 207 69 0 chr9 959882 959940 -116902687 + U6 snRNA snRNA 1 62 -45 180 77 0 0 chr9 960174 960200 -116902427 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 25 0 0 0 chr9 960631 960656 -116901971 + AT_rich Low_complexity Low_complexity 1 25 0 207 69 0 0 chr9 961447 961476 -116901151 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 227 255 0 64 chr9 961544 961638 -116900989 + T-rich Low_complexity Low_complexity 5 92 0 203 77 0 26 chr9 961890 961929 -116900698 + (CAA)n Simple_repeat Simple_repeat 2 39 0 678 167 0 24 chr9 964260 964386 -116898241 - AluJb SINE Alu -22 290 168 2431 36 0 0 chr9 965137 965449 -116897178 + AluY SINE Alu 1 312 0 2144 105 14 0 chr9 966003 966299 -116896328 - AluSq SINE Alu -13 300 1 1748 119 85 107 chr9 966441 966843 -116895784 - L1MB3 LINE L1 -2 6181 5789 180 179 0 0 chr9 966844 966883 -116895744 + (TG)n Simple_repeat Simple_repeat 2 40 0 276 235 11 49 chr9 967219 967402 -116895225 + (CATATA)n Simple_repeat Simple_repeat 3 178 0 587 238 0 2 chr9 967402 967558 -116895069 - L1MB3 LINE L1 -378 5796 5643 23 0 0 0 chr9 968131 968154 -116894473 + AT_rich Low_complexity Low_complexity 1 23 0 269 385 0 8 chr9 968688 968818 -116893809 + LTR16B LTR ERVL 102 230 -234 1524 330 123 29 chr9 969658 970645 -116891982 + L3 LINE CR1 355 1433 -144 2320 98 3 0 chr9 970964 971259 -116891368 - AluSp SINE Alu -17 296 1 1291 159 89 63 chr9 971266 971404 -116891223 - AluJo SINE Alu -16 296 163 195 0 27 54 chr9 971404 971441 -116891186 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 15724 91 5 11 chr9 971448 974334 -116888293 - L1PA7 LINE L1 -13 6141 3268 2151 134 0 0 chr9 974334 974641 -116887986 - AluSc SINE Alu -1 308 2 15724 91 5 11 chr9 974641 974809 -116887818 - L1PA7 LINE L1 -2886 3268 3100 1291 159 89 63 chr9 974809 974932 -116887695 - AluJo SINE Alu -154 158 20 2216 123 21 39 chr9 974951 975334 -116887293 - Tigger2a DNA MER2_type -58 376 1 1881 175 46 9 chr9 975379 975704 -116886923 - MER1B DNA MER1_type 0 337 1 191 265 15 44 chr9 976611 976679 -116885948 - L2 LINE L2 0 3313 3248 1249 199 0 5 chr9 976734 976945 -116885682 + AluJo SINE Alu 84 293 -19 729 261 97 39 chr9 977151 977534 -116885093 + MLT1J LTR MaLR 6 410 -101 2338 135 103 97 chr9 977585 978245 -116884382 - MER4A LTR ERV1 0 664 1 657 281 63 28 chr9 978799 979052 -116883575 - MIR SINE MIR 0 262 1 534 132 0 0 chr9 979594 979670 -116882957 - AluS SINE Alu -13 296 221 1030 120 7 0 chr9 979670 979820 -116882807 - AluJb SINE Alu -161 151 1 2330 78 17 0 chr9 979829 980122 -116882505 - AluY SINE Alu -13 298 1 2408 85 13 3 chr9 980137 980443 -116882184 - AluY SINE Alu 0 311 3 30 0 0 78 chr9 980872 980902 -116881725 + AT_rich Low_complexity Low_complexity 1 25 -34 1999 142 0 13 chr9 980902 981204 -116881423 - AluSx SINE Alu -14 298 1 30 0 0 78 chr9 981204 981237 -116881390 + AT_rich Low_complexity Low_complexity 25 59 0 2293 94 3 10 chr9 981308 981605 -116881022 - AluSg SINE Alu -15 295 1 720 217 39 10 chr9 983669 983876 -116878751 - L1MB3 LINE L1 -3 6180 5968 304 271 141 40 chr9 984041 984201 -116878426 - L1ME LINE L1 -545 5579 5397 237 322 22 11 chr9 984204 984384 -116878243 - L1ME LINE L1 -750 5396 5215 1884 149 4 0 chr9 984596 984877 -116877750 - AluJo SINE Alu -30 282 1 751 297 119 33 chr9 984877 985967 -116876660 - L1ME LINE L1 -1089 5057 3874 669 249 94 26 chr9 986223 986456 -116876171 - MIR SINE MIR -13 249 1 1209 211 39 24 chr9 986570 986907 -116875720 + L1MC4 LINE L1 6806 7147 -895 801 234 85 60 chr9 987059 987494 -116875133 + L1MC4 LINE L1 7587 8032 -10 1268 124 119 0 chr9 987555 987756 -116874871 + AluJo SINE Alu 87 311 -1 260 62 42 0 chr9 988340 988388 -116874239 - L1MB3 LINE L1 -7 6176 6127 894 188 42 16 chr9 988397 988589 -116874038 + Tigger2 DNA MER2_type 1 197 -2521 2584 125 48 2 chr9 988689 989129 -116873498 + Tigger2 DNA MER2_type 57 516 -2202 2446 64 0 6 chr9 989137 989448 -116873179 - AluSg SINE Alu 0 310 2 1367 235 76 53 chr9 989448 990133 -116872494 - MER49 LTR ERV1 -41 881 5 1163 119 0 0 chr9 990141 990309 -116872318 + Tigger2 DNA MER2_type 577 744 -1974 1457 146 4 15 chr9 990364 990625 -116872002 + Tigger2 DNA MER2_type 2461 2718 0 3139 145 31 22 chr9 990627 991283 -116871344 - L1MB3 LINE L1 -64 6119 5417 757 224 75 0 chr9 991560 991734 -116870893 - MER5A DNA MER1_type 0 189 3 21 0 0 0 chr9 991762 991783 -116870844 + AT_rich Low_complexity Low_complexity 1 21 0 379 240 72 72 chr9 993663 993788 -116868839 + MLT1D LTR MaLR 1 125 -380 297 143 0 0 chr9 993789 993838 -116868789 + MLT1D LTR MaLR 457 505 0 438 257 179 14 chr9 993936 994076 -116868551 - MER5A DNA MER1_type 0 189 27 308 184 88 79 chr9 994515 994629 -116867998 - L1ME4a LINE L1 -1 6120 6006 985 156 22 0 chr9 994825 995004 -116867623 + MER20 DNA MER1_type 33 215 -4 819 205 5 60 chr9 995014 995214 -116867413 - MER5A DNA MER1_type 0 189 1 21 36 0 0 chr9 996360 996388 -116866239 + AT_rich Low_complexity Low_complexity 1 28 0 400 257 122 15 chr9 996454 996604 -116866023 - MIR SINE MIR -60 148 20 890 219 11 0 chr9 998138 998321 -116864306 - MER5A DNA MER1_type -1 188 4 229 321 80 51 chr9 999038 999175 -116863452 - MIR3 SINE MIR -65 143 3 180 0 0 0 chr9 999807 999827 -116862800 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 231 167 0 0 chr9 1000180 1000222 -116862405 + (CATA)n Simple_repeat Simple_repeat 2 43 0 6413 86 7 12 chr9 1000248 1001547 -116861080 - L1PA13 LINE L1 -19 6144 4849 414 37 0 0 chr9 1001553 1001607 -116861020 - MLT2A1 LTR ERVL 0 444 391 183 42 0 0 chr9 1001615 1001639 -116860988 + (TA)n Simple_repeat Simple_repeat 1 24 0 186 43 0 0 chr9 1001727 1001750 -116860877 + (TA)n Simple_repeat Simple_repeat 1 23 0 439 201 22 39 chr9 1001804 1001983 -116860644 + (TA)n Simple_repeat Simple_repeat 1 176 0 316 253 101 0 chr9 1001984 1002083 -116860544 + L1MC4 LINE L1 6583 6691 -1351 2905 94 0 5 chr9 1002083 1002489 -116860138 - MLT2A1 LTR ERVL -40 404 1 10235 158 16 19 chr9 1002551 1003703 -116858924 - L1P LINE L1 -1295 4851 3698 369 0 0 0 chr9 1003703 1003744 -116858883 + (TG)n Simple_repeat Simple_repeat 1 41 0 10235 158 16 19 chr9 1003744 1003961 -116858666 - L1P LINE L1 -2448 3698 3482 1077 63 0 7 chr9 1003961 1004103 -116858524 - L1PA5 LINE L1 -7 6147 6007 10235 158 16 19 chr9 1004103 1004761 -116857866 - L1P LINE L1 -2664 3482 2828 6170 88 1 4 chr9 1004761 1005615 -116857012 - L1PA8 LINE L1 0 6172 5314 2269 102 7 0 chr9 1005615 1005918 -116856709 - AluSq SINE Alu -8 305 1 6170 88 1 4 chr9 1005918 1006588 -116856039 - L1PA8 LINE L1 -858 5314 4644 4243 216 46 11 chr9 1006592 1007747 -116854880 - L1M4 LINE L1 -1551 4595 3401 444 153 28 0 chr9 1057748 1057820 -116804807 - AluJ/FLAM SINE Alu -238 74 1 334 299 84 24 chr9 1057820 1057987 -116804640 + L2 LINE L2 1945 2121 -1193 201 191 44 103 chr9 1057977 1058045 -116804582 + MER5B DNA MER1_type 9 72 -106 * 327 296 87 0 chr9 1058033 1058148 -116804479 + L2 LINE L2 2250 2374 -940 3872 156 21 0 chr9 1058555 1059265 -116803362 - L1MA7 LINE L1 -10 6485 5761 1261 108 36 115 chr9 1059265 1059544 -116803083 - Tigger7 DNA MER2_type -1 2486 2230 11004 166 33 18 chr9 1059578 1059814 -116802813 - L1MA7 LINE L1 -728 5767 5536 212 77 26 0 chr9 1059814 1059853 -116802774 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 6542 34 12 1 chr9 1059854 1061380 -116801247 - L1PA5 LINE L1 -13 6141 4547 11004 166 33 18 chr9 1061380 1063630 -116798997 - L1MA7 LINE L1 -959 5536 3236 2535 11 0 0 chr9 1063630 1063906 -116798721 - AluYa5 SINE Alu 0 311 36 11004 166 33 18 chr9 1063906 1064013 -116798614 - L1MA7 LINE L1 -3259 3236 3132 3558 261 31 34 chr9 1064350 1066018 -116796609 - L1MA7 LINE L1 -3213 3137 1465 1819 176 7 0 chr9 1066018 1066313 -116796314 - AluSx SINE Alu -15 297 1 3558 261 31 34 chr9 1066313 1066893 -116795734 - L1MA7 LINE L1 -4885 1465 1329 2064 143 0 29 chr9 1066893 1067201 -116795426 - AluSx SINE Alu -11 301 3 3558 261 31 34 chr9 1067201 1067930 -116794697 - L1MA7 LINE L1 -5021 1329 599 2952 244 9 23 chr9 1067907 1067992 -116794635 - L1MA7 LINE L1 -5543 738 653 * 2431 70 0 19 chr9 1067992 1068304 -116794323 + AluY SINE Alu 1 306 -5 2952 244 9 23 chr9 1068304 1068965 -116793662 - L1MA7 LINE L1 -5628 653 2 200 205 0 0 chr9 1069035 1069074 -116793553 + (TG)n Simple_repeat Simple_repeat 2 40 0 755 309 148 26 chr9 1069153 1069681 -116792946 - L2 LINE L2 -949 2365 1774 313 309 71 52 chr9 1069735 1069945 -116792682 + L1ME LINE L1 51 264 -5855 1078 302 25 24 chr9 1070363 1071144 -116791483 + L1ME LINE L1 742 1564 -4746 3388 163 34 34 chr9 1071168 1071782 -116790845 - L1MB1 LINE L1 -225 5943 5330 2201 108 0 3 chr9 1071782 1072079 -116790548 - AluSg SINE Alu -14 296 1 3388 163 34 34 chr9 1072079 1072938 -116789689 - L1MB1 LINE L1 -838 5330 3734 22135 48 2 0 chr9 1073084 1073730 -116788897 + L1PA5 LINE L1 2562 3205 -2949 2377 81 0 0 chr9 1073730 1074026 -116788601 - AluY SINE Alu -15 296 1 22135 48 2 0 chr9 1074026 1076975 -116785652 + L1PA5 LINE L1 3205 6153 -1 254 274 67 12 chr9 1077030 1077194 -116785433 + L1ME LINE L1 3267 3439 -2690 * 285 353 55 0 chr9 1077170 1077388 -116785239 + L1ME LINE L1 3365 3594 -2535 1062 282 78 32 chr9 1079129 1079383 -116783244 + L1ME LINE L1 3608 3849 -2280 2289 104 0 13 chr9 1079383 1079700 -116782927 + AluSq SINE Alu 1 313 0 1062 282 78 32 chr9 1079700 1080155 -116782472 + L1ME LINE L1 3849 4349 -1780 428 238 37 18 chr9 1080261 1080425 -116782202 - L1M4 LINE L1 -2107 4039 3873 646 277 140 15 chr9 1080429 1080887 -116781740 + L1ME LINE L1 4493 5007 -1122 1268 194 4 9 chr9 1081068 1081300 -116781327 + MER8 DNA MER2_type 1 231 -8 274 302 53 36 chr9 1081674 1081899 -116780728 - HAL1 LINE L1 -846 1661 1433 351 113 0 0 chr9 1082669 1082722 -116779905 + (CA)n Simple_repeat Simple_repeat 1 53 0 223 254 14 0 chr9 1083128 1083199 -116779428 + (CA)n Simple_repeat Simple_repeat 1 72 0 986 215 24 0 chr9 1083910 1084119 -116778508 - MER58A DNA MER1_type 0 224 11 354 45 0 0 chr9 1085711 1085755 -116776872 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 901 174 0 0 chr9 1085765 1085903 -116776724 - FRAM SINE Alu -38 138 1 419 292 65 53 chr9 1087004 1087401 -116775226 + MLT1J LTR MaLR 79 480 -31 388 223 10 29 chr9 1087433 1087536 -116775091 + MIR SINE MIR 86 186 -76 411 296 0 9 chr9 1087694 1087809 -116774818 + MER81 DNA DNA 1 114 0 242 310 0 0 chr9 1087817 1087888 -116774739 + MER81 DNA DNA 44 114 0 303 297 83 48 chr9 1089742 1089887 -116772740 + MIR SINE MIR 110 259 -3 234 375 75 25 chr9 1090417 1090577 -116772050 - L2 LINE L2 -222 3050 2883 306 182 0 0 chr9 1090711 1090777 -116771850 + CT-rich Low_complexity Low_complexity 1 66 0 695 162 7 0 chr9 1090942 1091084 -116771543 + CT-rich Low_complexity Low_complexity 2 144 0 300 333 8 33 chr9 1091606 1091726 -116770901 - MIR SINE MIR -134 128 12 1510 224 259 23 chr9 1091944 1092472 -116770155 + MER82 DNA MER2_type 1 653 0 392 246 272 15 chr9 1092475 1092670 -116769957 - MIR SINE MIR -10 252 8 223 332 82 0 chr9 1092675 1092776 -116769851 - MIR SINE MIR -77 131 22 309 200 66 0 chr9 1093304 1093393 -116769234 + L1MC/D LINE L1 5715 5808 -313 430 283 61 20 chr9 1093707 1093905 -116768722 - L1MDa LINE L1 -3949 2591 2386 744 261 106 11 chr9 1094090 1094439 -116768188 - L1MDa LINE L1 -4573 2148 1767 497 345 133 15 chr9 1094645 1094984 -116767643 + L1MEd LINE L1 472 850 -5269 204 202 0 36 chr9 1095686 1095770 -116766857 + GA-rich Low_complexity Low_complexity 1 81 0 270 303 18 36 chr9 1096122 1096287 -116766340 - L2 LINE L2 -224 3048 2887 282 29 0 0 chr9 1098042 1098077 -116764550 + (TG)n Simple_repeat Simple_repeat 1 35 0 272 145 290 0 chr9 1101247 1101309 -116761318 - MADE1 DNA Mariner 0 80 1 890 201 48 0 chr9 1101475 1101664 -116760963 + MER58 DNA MER1_type 4 201 -2219 2007 151 6 10 chr9 1101664 1101975 -116760652 + AluJb SINE Alu 1 310 -2 21 0 0 0 chr9 1102341 1102362 -116760265 + AT_rich Low_complexity Low_complexity 1 21 0 809 259 59 4 chr9 1102426 1102665 -116759962 - L1ME1 LINE L1 -8 6158 5907 21 0 0 0 chr9 1102881 1102902 -116759725 + AT_rich Low_complexity Low_complexity 1 21 0 4179 85 51 22 chr9 1104723 1105348 -116757279 + L1PA11 LINE L1 5529 6171 -3 216 0 0 0 chr9 1105938 1105962 -116756665 + (T)n Simple_repeat Simple_repeat 1 24 0 429 275 129 23 chr9 1106807 1106978 -116755649 - MER5A DNA MER1_type 0 189 1 323 246 32 24 chr9 1107187 1107313 -116755314 - L1ME4a LINE L1 -17 6104 5978 250 260 41 24 chr9 1107745 1107868 -116754759 - LTR67 LTR ERVL 0 557 433 635 243 55 141 chr9 1108004 1108044 -116754583 - L2 LINE L2 0 3313 3271 2477 146 50 2 chr9 1108044 1108463 -116754164 - L1PA16 LINE L1 -11 6155 5717 635 243 55 141 chr9 1108463 1108825 -116753802 - L2 LINE L2 -42 3271 2946 * 1191 223 208 29 chr9 1108812 1108856 -116753771 - L2 LINE L2 -581 2733 2698 2220 84 3 17 chr9 1108856 1109153 -116753474 + AluY SINE Alu 1 293 -18 1191 223 208 29 chr9 1109153 1109634 -116752993 - L2 LINE L2 -616 2698 2061 249 375 77 0 chr9 1110031 1110135 -116752492 + L2 LINE L2 3149 3260 -12 649 184 18 9 chr9 1110154 1110268 -116752359 - FLAM_A SINE Alu -17 116 2 1322 283 109 13 chr9 1110353 1110887 -116751740 - MLT1K LTR MaLR -2 586 2 22 35 0 0 chr9 1112366 1112395 -116750232 + AT_rich Low_complexity Low_complexity 1 29 0 359 155 0 28 chr9 1112395 1112466 -116750161 + Charlie5 DNA MER1_type 2233 2301 -311 672 142 9 9 chr9 1112475 1112588 -116750039 - L1MC1 LINE L1 -5 6328 6216 12333 95 10 10 chr9 1112588 1114433 -116748194 - L1P LINE L1 -4301 1845 1 2450 142 11 47 chr9 1114432 1114905 -116747722 - L1MC1 LINE L1 -104 6229 5774 * 267 322 47 53 chr9 1115157 1115328 -116747299 + MIR SINE MIR 20 189 -73 450 127 0 0 chr9 1115374 1115445 -116747182 + (TTCC)n Simple_repeat Simple_repeat 1 71 0 2009 138 17 0 chr9 1115445 1115736 -116746891 - AluSx SINE Alu -16 296 1 32172 45 3 2 chr9 1116497 1119445 -116743182 - L1PA4 LINE L1 -9 6146 3201 2378 86 3 0 chr9 1119445 1119746 -116742881 + AluY SINE Alu 1 302 -9 32172 45 3 2 chr9 1119746 1122939 -116739688 - L1PA4 LINE L1 -2954 3201 3 207 215 62 46 chr9 1122989 1123054 -116739573 + L2 LINE L2 3184 3249 -64 300 274 0 0 chr9 1123521 1123605 -116739022 + MER103 DNA DNA 80 163 -3 2289 95 0 25 chr9 1123808 1124124 -116738503 + AluSx SINE Alu 1 308 -4 584 283 99 9 chr9 1124643 1124855 -116737772 - MIR SINE MIR -18 244 14 198 103 0 0 chr9 1124875 1124904 -116737723 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 230 118 0 0 chr9 1125083 1125117 -116737510 + Charlie8 DNA MER1_type 1374 1407 -1010 323 333 21 0 chr9 1125284 1125380 -116737247 - L3 LINE CR1 -54 1523 1426 300 376 68 14 chr9 1125611 1125832 -116736795 - L3 LINE CR1 -480 1097 865 687 256 23 6 chr9 1126938 1127114 -116735513 + MIR SINE MIR 13 191 -71 356 266 7 65 chr9 1128832 1128986 -116733641 + L1ME4a LINE L1 5571 5715 -406 237 75 25 25 chr9 1129049 1129089 -116733538 + L1ME4a LINE L1 5725 5764 -357 301 312 27 32 chr9 1129115 1129301 -116733326 + L1ME4a LINE L1 5861 6045 -76 368 314 50 0 chr9 1130804 1130925 -116731702 - MIR3 SINE MIR -41 167 41 1917 180 0 0 chr9 1131572 1131877 -116730750 - AluJo SINE Alu -7 305 1 313 234 49 12 chr9 1132271 1132376 -116730251 - MIR SINE MIR -79 129 20 1152 153 0 0 chr9 1132621 1132797 -116729830 + L1PA16 LINE L1 5980 6155 -11 486 259 94 18 chr9 1132822 1132992 -116729635 + MIR SINE MIR 59 241 -21 262 318 116 8 chr9 1133226 1133355 -116729272 - MIR SINE MIR -71 191 49 312 320 17 10 chr9 1134111 1134283 -116728344 + GA-rich Low_complexity Low_complexity 2 293 0 653 281 69 16 chr9 1135833 1136139 -116726488 - LTR33 LTR ERVL -20 501 180 754 22 0 0 chr9 1136139 1136230 -116726397 - L1PA5 LINE L1 -1322 4824 4734 7649 51 0 23 chr9 1136230 1137575 -116725052 + L1PA5 LINE L1 4831 6154 0 580 214 115 50 chr9 1137576 1137758 -116724869 - LTR33 LTR ERVL -327 194 1 882 133 0 8 chr9 1139433 1139561 -116723066 + AluJb SINE Alu 1 127 -185 293 296 125 6 chr9 1140578 1140754 -116721873 - L1ME LINE L1 -531 5590 5394 558 108 26 25 chr9 1140982 1141173 -116721454 - L1MA4A LINE L1 -24 6279 6028 288 277 40 0 chr9 1141406 1141507 -116721120 - LTR67 LTR ERVL -2 555 451 2742 146 5 34 chr9 1141893 1142337 -116720290 - Tigger2a DNA MER2_type -2 432 2 388 297 55 25 chr9 1142416 1142827 -116719800 - L1ME LINE L1 -1445 4701 4274 25 75 0 0 chr9 1144867 1144920 -116717707 + AT_rich Low_complexity Low_complexity 1 53 0 1227 269 63 41 chr9 1146099 1146419 -116716208 - LTR33 LTR ERVL -2 519 184 195 42 0 0 chr9 1146419 1146443 -116716184 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1227 269 63 41 chr9 1146443 1146583 -116716044 - LTR33 LTR ERVL -337 184 49 1448 175 126 7 chr9 1147126 1147395 -116715232 - AluJo SINE Alu -1 301 1 477 321 134 13 chr9 1147530 1147754 -116714873 - MIR SINE MIR -1 261 11 22 0 0 0 chr9 1147865 1147887 -116714740 + AT_rich Low_complexity Low_complexity 1 22 0 1853 167 49 71 chr9 1148553 1149020 -116713607 - LTR16A1 LTR ERVL 0 457 1 1834 213 3 42 chr9 1149043 1149423 -116713204 + MLT1A1 LTR MaLR 1 365 0 227 269 30 15 chr9 1149523 1149590 -116713037 - MER112 DNA MER1_type -189 71 4 2024 123 0 7 chr9 1150286 1150602 -116712025 - AluSx SINE Alu 0 314 1 43715 34 23 1 chr9 1150652 1156673 -116705954 + L1PA2 LINE L1 1 6155 0 189 74 0 0 chr9 1156701 1156728 -116705899 + (A)n Simple_repeat Simple_repeat 1 27 0 734 279 169 24 chr9 1156731 1156862 -116705765 + L1ME3A LINE L1 4015 4126 -2020 210 91 0 0 chr9 1156862 1156895 -116705732 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 734 279 169 24 chr9 1156895 1157508 -116705119 + L1ME3A LINE L1 4126 4867 -1279 528 272 36 15 chr9 1157592 1157787 -116704840 + L1ME3A LINE L1 5749 5947 -223 273 249 85 58 chr9 1157860 1158049 -116704578 + L1ME3A LINE L1 5963 6156 -14 480 190 0 0 chr9 1160091 1160170 -116702457 - FLAM_A SINE Alu -43 99 21 658 276 117 26 chr9 1160252 1160603 -116702024 - L1ME4a LINE L1 -218 5903 5521 22 0 0 0 chr9 1160651 1160673 -116701954 + AT_rich Low_complexity Low_complexity 1 22 0 404 260 164 71 chr9 1161021 1161567 -116701060 - L1ME4a LINE L1 -34 6087 5462 1775 170 0 16 chr9 1161567 1161884 -116700743 - AluJb SINE Alu 0 312 1 404 260 164 71 chr9 1161884 1162059 -116700568 - L1ME4a LINE L1 -659 5462 5305 21 0 0 0 chr9 1162372 1162393 -116700234 + AT_rich Low_complexity Low_complexity 1 21 0 392 289 133 8 chr9 1162691 1162819 -116699808 + MLT1J LTR MaLR 9 152 -359 593 231 8 0 chr9 1162918 1163035 -116699592 + LTR16A1 LTR ERVL 3 120 -337 334 278 44 0 chr9 1163071 1163161 -116699466 + MLT1J LTR MaLR 292 385 -126 2591 187 18 66 chr9 1163432 1163591 -116699036 - LTR27 LTR ERV1 0 636 471 1961 168 60 26 chr9 1163591 1163942 -116698685 - THE1B LTR MaLR -1 363 1 2591 187 18 66 chr9 1163942 1164449 -116698178 - LTR27 LTR ERV1 -165 471 2 224 264 36 45 chr9 1164457 1164567 -116698060 + MIR SINE MIR 100 208 -54 409 296 41 21 chr9 1165062 1165266 -116697361 - ERVL LTR ERVL -1923 3562 3357 255 323 40 0 chr9 1165420 1165519 -116697108 - ERVL LTR ERVL -2584 3180 3078 1059 232 147 4 chr9 1165596 1165868 -116696759 + LTR16C LTR ERVL 79 389 -102 312 235 0 49 chr9 1165893 1165995 -116696632 - L1MC4a LINE L1 -1860 5948 5852 627 125 0 0 chr9 1166027 1166123 -116696504 - L1PA16 LINE L1 0 6166 6071 1018 166 11 6 chr9 1166188 1166369 -116696258 - L1PA15 LINE L1 -100 6065 5884 300 191 16 0 chr9 1166369 1166432 -116696195 + LTR16C LTR ERVL 428 491 0 987 310 82 43 chr9 1166448 1167624 -116695003 - ERVL LTR ERVL -2462 3023 1787 2011 136 10 3 chr9 1167699 1167993 -116694634 - AluSg SINE Alu -14 296 1 1309 180 18 9 chr9 1168681 1168903 -116693724 + MSTB1 LTR MaLR 5 228 -204 529 299 48 11 chr9 1168907 1169094 -116693533 - MIR SINE MIR -19 243 50 479 343 94 9 chr9 1169551 1169784 -116692843 + MIR SINE MIR 10 262 0 2093 130 10 0 chr9 1170685 1170984 -116691643 + AluSq SINE Alu 1 302 -11 24 32 0 0 chr9 1171047 1171078 -116691549 + AT_rich Low_complexity Low_complexity 1 31 0 2171 115 138 26 chr9 1171503 1171887 -116690740 + MSTC LTR MaLR 2 428 0 357 294 39 39 chr9 1171969 1172149 -116690478 + MLT1J LTR MaLR 1 180 -331 2676 49 0 0 chr9 1172201 1172566 -116690061 + L1PA5 LINE L1 5812 6176 0 239 177 38 51 chr9 1172726 1172805 -116689822 + MLT1J LTR MaLR 403 480 -31 1906 171 11 22 chr9 1172923 1173291 -116689336 + MLT1A1 LTR MaLR 1 364 -1 192 343 0 0 chr9 1174325 1174392 -116688235 + MIR SINE MIR 182 248 -14 371 278 28 0 chr9 1174624 1174732 -116687895 + MIR SINE MIR 3 113 -149 225 139 0 0 chr9 1174787 1174823 -116687804 - L1P4 LINE L1 -532 5642 5607 375 269 156 6 chr9 1174826 1174986 -116687641 + MIR SINE MIR 79 262 0 207 0 0 0 chr9 1175896 1175919 -116686708 + (TG)n Simple_repeat Simple_repeat 2 24 0 33 56 0 0 chr9 1175919 1175973 -116686654 + AT_rich Low_complexity Low_complexity 1 54 0 452 72 14 0 chr9 1175974 1176043 -116686584 + (TA)n Simple_repeat Simple_repeat 1 70 0 292 292 36 105 chr9 1177667 1177886 -116684741 + MIR SINE MIR 48 251 -11 391 326 62 26 chr9 1177899 1178126 -116684501 + MIR SINE MIR 18 252 -10 228 233 0 0 chr9 1178775 1178818 -116683809 + polypurine Low_complexity Low_complexity 2 44 0 485 267 2 42 chr9 1179473 1179616 -116683011 + MIR SINE MIR 53 190 -68 507 246 266 10 chr9 1181300 1181503 -116681124 + MIR SINE MIR 3 257 -5 864 221 57 12 chr9 1181873 1182117 -116680510 - L1ME2 LINE L1 -199 5965 5711 304 281 0 12 chr9 1182973 1183055 -116679572 + MER81 DNA DNA 17 97 -17 291 218 173 64 chr9 1183268 1183378 -116679249 - MIR3 SINE MIR -47 161 40 5428 142 30 25 chr9 1183450 1185146 -116677481 + L1MA4 LINE L1 4563 6281 -19 218 273 18 0 chr9 1185185 1185240 -116677387 - MER5A DNA MER1_type -98 91 36 301 275 171 31 chr9 1189414 1189568 -116673059 + MIR SINE MIR 5 193 -69 366 23 0 0 chr9 1189568 1189611 -116673016 + (TG)n Simple_repeat Simple_repeat 2 44 0 301 275 171 31 chr9 1189611 1189649 -116672978 + MIR SINE MIR 193 224 -38 241 122 24 0 chr9 1189695 1189736 -116672891 - L2 LINE L2 -4 3309 3268 425 264 86 6 chr9 1189737 1189900 -116672727 - L2 LINE L2 -1907 1407 1232 282 239 54 33 chr9 1190419 1190511 -116672116 - MLT1H LTR MaLR -16 533 433 383 311 146 0 chr9 1191295 1191446 -116671181 - L3 LINE CR1 -8 1569 1397 210 239 103 65 chr9 1192560 1192715 -116669912 - L3 LINE CR1 -381 1196 1036 296 24 0 24 chr9 1193791 1193833 -116668794 + (TA)n Simple_repeat Simple_repeat 2 42 0 764 332 118 13 chr9 1193836 1194546 -116668081 + ERVL LTR ERVL 3305 4089 -1675 283 341 90 20 chr9 1194575 1194918 -116667709 + ERVL LTR ERVL 4296 4662 -992 495 347 46 28 chr9 1194964 1195422 -116667205 + ERVL LTR ERVL 4770 5235 -529 841 251 132 30 chr9 1195725 1196128 -116666499 + LTR16A1 LTR ERVL 14 457 0 263 267 11 0 chr9 1196263 1196353 -116666274 - LTR16A1 LTR ERVL -339 118 28 257 233 0 12 chr9 1196801 1196887 -116665740 + CT-rich Low_complexity Low_complexity 2 86 0 368 300 130 34 chr9 1198668 1198896 -116663731 - MIR SINE MIR 0 262 3 2168 125 0 0 chr9 1198942 1199231 -116663396 - AluSx SINE Alu -23 289 1 224 402 39 0 chr9 1199383 1199485 -116663142 - L2 LINE L2 -16 3256 3151 215 100 0 25 chr9 1201319 1201359 -116661268 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 4608 170 6 30 chr9 1201597 1202861 -116659766 + L1MB3 LINE L1 4903 6138 -45 1226 188 62 62 chr9 1202861 1202937 -116659690 + AluJo SINE Alu 44 119 -193 180 0 0 0 chr9 1202937 1202957 -116659670 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 1226 188 62 62 chr9 1202957 1203136 -116659491 + AluJo SINE Alu 118 299 -13 331 131 0 0 chr9 1203136 1203197 -116659430 + L1MB2 LINE L1 6111 6171 0 1001 237 113 47 chr9 1203999 1204505 -116658122 - L1ME4a LINE L1 -17 6104 5566 317 289 26 46 chr9 1204679 1204831 -116657796 - L1ME4a LINE L1 -786 5360 5212 1169 167 8 71 chr9 1204906 1205158 -116657469 + MER46A DNA MER2_type 1 236 0 1233 160 60 14 chr9 1205298 1205357 -116657270 - L1MA7 LINE L1 -6 6285 6230 318 26 0 0 chr9 1205357 1205396 -116657231 + (CA)n Simple_repeat Simple_repeat 2 40 0 1233 160 60 14 chr9 1205396 1205617 -116657010 - L1MA7 LINE L1 -61 6230 5992 455 265 87 99 chr9 1206046 1206215 -116656412 - HAL1 LINE L1 -1 2506 2336 2447 45 0 19 chr9 1206215 1206524 -116656103 - AluY SINE Alu -8 303 1 455 265 87 99 chr9 1206524 1206758 -116655869 - HAL1 LINE L1 -171 2336 2108 1914 195 29 43 chr9 1206921 1207413 -116655214 - HAL1 LINE L1 -1959 548 64 26 30 0 0 chr9 1207624 1207657 -116654970 + AT_rich Low_complexity Low_complexity 1 33 0 2381 90 0 0 chr9 1208379 1208680 -116653947 - AluY SINE Alu -10 301 1 433 301 78 41 chr9 1208778 1208997 -116653630 - MIR SINE MIR -16 246 20 241 183 14 28 chr9 1209414 1209485 -116653142 + GA-rich Low_complexity Low_complexity 2 71 0 258 321 71 18 chr9 1209594 1209706 -116652921 + L2 LINE L2 3196 3313 0 208 121 0 0 chr9 1210662 1210695 -116651932 + (CA)n Simple_repeat Simple_repeat 2 34 0 343 96 0 0 chr9 1212990 1213042 -116649585 + L1 LINE L1 5197 5248 -898 996 127 6 11 chr9 1213710 1213891 -116648736 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 584 230 58 40 chr9 1214413 1214587 -116648040 + MER5B DNA MER1_type 2 178 0 261 268 16 71 chr9 1215172 1215299 -116647328 - MER5B DNA MER1_type 0 178 59 554 217 118 80 chr9 1215340 1215719 -116646908 + L1MC4a LINE L1 5523 5823 -298 243 309 18 36 chr9 1215739 1215849 -116646778 + (CATATA)n Simple_repeat Simple_repeat 3 110 0 1516 206 22 43 chr9 1216124 1216493 -116646134 + MLT1A1 LTR MaLR 3 363 -2 273 292 75 50 chr9 1216766 1216927 -116645700 + MIR SINE MIR 70 234 -28 29 78 0 0 chr9 1217560 1217624 -116645003 + AT_rich Low_complexity Low_complexity 1 64 0 1224 189 45 89 chr9 1218098 1218480 -116644147 - MLT1A1 LTR MaLR 0 365 1 694 300 27 5 chr9 1218653 1218873 -116643754 - MIR SINE MIR -13 249 25 1898 161 6 3 chr9 1219033 1219344 -116643283 - AluJb SINE Alu 0 312 1 234 237 34 0 chr9 1222073 1222132 -116640495 + MIR3 SINE MIR 97 157 -51 463 175 88 0 chr9 1222218 1222332 -116640295 - Charlie8 DNA MER1_type -2257 160 37 536 265 21 48 chr9 1222341 1222530 -116640097 + L1MEc LINE L1 36 219 -6177 1932 152 7 0 chr9 1222573 1222869 -116639758 + AluSx SINE Alu 1 298 -14 5646 147 27 6 chr9 1223070 1224968 -116637659 - L1MA8 LINE L1 -137 6154 4213 1171 280 71 32 chr9 1225043 1225639 -116636988 + L2 LINE L2 2694 3313 0 15356 51 2 1 chr9 1226502 1229214 -116633413 - L1PA8 LINE L1 -6 6166 3441 10780 83 21 1 chr9 1229214 1230804 -116631823 + L1P LINE L1 2856 4478 -1668 470 276 37 22 chr9 1230965 1231099 -116631528 - L2 LINE L2 -1 3271 3136 195 316 76 59 chr9 1231387 1231624 -116631003 - L2 LINE L2 -485 2829 2589 259 266 141 0 chr9 1231632 1231760 -116630867 - MER117 DNA MER1_type -1 196 51 204 271 121 72 chr9 1231865 1232072 -116630555 - L2 LINE L2 -791 2523 2307 190 238 57 76 chr9 1232159 1232264 -116630363 - L2 LINE L2 -1017 2297 2195 478 206 46 69 chr9 1233135 1233674 -116628953 + L1ME1 LINE L1 5929 6099 -67 1929 148 107 3 chr9 1233288 1233653 -116628974 - MER57A LTR ERV1 0 403 1 319 152 22 196 chr9 1233653 1233770 -116628857 + L1MA10 LINE L1 6190 6326 -8 441 54 0 0 chr9 1233774 1233830 -116628797 + (CA)n Simple_repeat Simple_repeat 2 57 0 540 313 19 6 chr9 1235772 1235932 -116626695 - MIR SINE MIR -23 239 78 515 239 67 35 chr9 1236066 1236321 -116626306 + L1ME3A LINE L1 4774 5036 -1110 719 279 146 18 chr9 1236494 1237103 -116625524 + L1ME3A LINE L1 5258 5944 -226 312 304 87 36 chr9 1237148 1237286 -116625341 + L1ME3A LINE L1 5953 6097 -73 979 248 94 46 chr9 1238700 1239135 -116623492 - MLT1C LTR MaLR -8 459 4 335 302 86 17 chr9 1240337 1240453 -116622174 + L2 LINE L2 3141 3264 -8 343 307 69 35 chr9 1240540 1240830 -116621797 - LTR16C LTR ERVL 0 491 192 889 178 28 134 chr9 1241399 1241866 -116620761 + MLT1B LTR MaLR 1 444 -23 238 150 0 0 chr9 1241892 1241932 -116620695 + MLT1B LTR MaLR 349 388 -2 197 317 10 109 chr9 1241993 1242094 -116620533 + MIR SINE MIR 21 111 -97 432 308 83 0 chr9 1242960 1243080 -116619547 + MIR SINE MIR 17 146 -62 270 308 175 21 chr9 1243116 1243259 -116619368 + MIR SINE MIR 81 245 -17 2133 127 0 0 chr9 1243601 1243884 -116618743 - AluSx SINE Alu -27 285 3 302 325 25 44 chr9 1244494 1244654 -116617973 - MIR SINE MIR 0 262 106 487 210 70 38 chr9 1244852 1245009 -116617618 - MER112 DNA MER1_type -6 254 93 42 15 0 44 chr9 1245011 1245079 -116617548 + AT_rich Low_complexity Low_complexity 1 65 0 338 183 61 12 chr9 1245079 1245161 -116617466 - MER112 DNA MER1_type -174 86 1 272 314 97 57 chr9 1245277 1245649 -116616978 - L2 LINE L2 -412 2902 2516 250 273 281 7 chr9 1247369 1247508 -116615119 - MIR SINE MIR -27 235 59 183 323 71 0 chr9 1247613 1247712 -116614915 - L3b LINE CR1 -242 1341 1236 227 299 0 52 chr9 1249851 1249928 -116612699 - L2 LINE L2 0 3313 3241 1803 150 58 0 chr9 1251506 1251799 -116610828 - AluSx SINE Alu -2 310 1 535 330 42 0 chr9 1251825 1252016 -116610611 - MIR SINE MIR -8 254 56 503 256 173 0 chr9 1252857 1252990 -116609637 + MER5A DNA MER1_type 32 187 -2 400 168 0 161 chr9 1253796 1253814 -116608813 + L1M2 LINE L1 5407 5426 -865 2185 117 3 13 chr9 1253814 1254148 -116608479 + AluSx SINE Alu 1 312 0 400 168 0 161 chr9 1254148 1254174 -116608453 + L1M2 LINE L1 5426 5455 -836 1852 156 12 23 chr9 1254174 1254520 -116608107 + L1PB4 LINE L1 5815 6156 0 400 168 0 161 chr9 1254520 1254611 -116608016 + L1M2 LINE L1 5455 5521 -770 502 245 129 31 chr9 1254632 1254795 -116607832 - L2 LINE L2 0 3313 3135 191 382 83 0 chr9 1254939 1255083 -116607544 + MIR3 SINE MIR 38 193 -15 1566 228 52 29 chr9 1255241 1255726 -116606901 + MLT1D LTR MaLR 6 386 -4 303 212 71 12 chr9 1255728 1255813 -116606814 + MLT1I LTR MaLR 61 150 -259 2126 185 15 37 chr9 1256023 1256487 -116606140 - MLT2B1 LTR ERVL -64 456 3 248 281 53 35 chr9 1256492 1256606 -116606021 + MLT1I LTR MaLR 256 371 -38 248 288 91 23 chr9 1256808 1256940 -116605687 + MER103 DNA DNA 2 142 -24 891 250 29 16 chr9 1258976 1259220 -116603407 + MLT1H1 LTR MaLR 307 553 -2 192 167 0 0 chr9 1259457 1259487 -116603140 + L2 LINE L2 3233 3262 -51 731 272 83 48 chr9 1259496 1259954 -116602673 - L2 LINE L2 -117 3196 2719 673 167 233 17 chr9 1262021 1262201 -116600426 + MER20 DNA MER1_type 1 219 0 4391 155 37 34 chr9 1262202 1263092 -116599535 - MER54A LTR ERVL -1 900 8 243 61 0 0 chr9 1263149 1263182 -116599445 + (CAAAA)n Simple_repeat Simple_repeat 1 33 0 187 316 26 26 chr9 1263264 1263340 -116599287 + L2 LINE L2 2712 2787 -527 431 297 116 7 chr9 1263458 1263613 -116599014 + MIR SINE MIR 10 181 -81 182 301 86 49 chr9 1264246 1264409 -116598218 + L2 LINE L2 2841 3009 -263 247 286 163 7 chr9 1264896 1265043 -116597584 + MIR SINE MIR 93 262 0 479 307 49 13 chr9 1265800 1266025 -116596602 - Charlie8 DNA MER1_type -2184 233 1 2196 115 36 39 chr9 1266067 1266431 -116596196 + THE1B LTR MaLR 1 363 -1 274 284 7 97 chr9 1267068 1267223 -116595404 + MLT1J LTR MaLR 136 276 -235 2327 289 42 24 chr9 1267225 1268234 -116594393 - MER69B DNA AcHobo -199 1027 1 674 321 91 19 chr9 1268536 1269010 -116593617 - MLT1G1 LTR MaLR -13 582 75 196 279 0 0 chr9 1269117 1269160 -116593467 + L2 LINE L2 3261 3303 -10 1761 179 3 38 chr9 1269250 1269569 -116593058 + AluJo SINE Alu 1 308 -4 264 261 43 54 chr9 1270631 1270723 -116591904 - L3 LINE CR1 -12 1565 1475 3476 265 106 35 chr9 1272771 1272935 -116589692 - L2 LINE L2 0 3313 3162 2333 163 89 0 chr9 1272935 1273153 -116589474 - MSTA LTR MaLR 0 428 231 273 57 0 0 chr9 1273153 1273188 -116589439 + (TGGGGG)n Simple_repeat Simple_repeat 5 39 0 2333 163 89 0 chr9 1273188 1273362 -116589265 - MSTA LTR MaLR -197 231 1 3476 265 106 35 chr9 1273362 1274865 -116587762 - L2 LINE L2 -151 3162 1518 222 37 0 0 chr9 1274912 1274939 -116587688 + (TG)n Simple_repeat Simple_repeat 2 28 0 184 344 122 28 chr9 1275304 1275696 -116586931 + L2 LINE L2 2829 3257 -15 493 263 73 39 chr9 1275713 1275918 -116586709 + HAL1 LINE L1 1 212 -2295 2543 264 145 57 chr9 1275986 1276209 -116586418 + HAL1 LINE L1 602 804 -1703 1580 170 7 7 chr9 1276209 1276479 -116586148 - L1PA16 LINE L1 0 6166 5897 2543 264 145 57 chr9 1276479 1277991 -116584636 + HAL1 LINE L1 804 2491 -16 324 272 120 27 chr9 1279242 1279379 -116583248 - MIR3 SINE MIR -23 185 33 1076 316 74 20 chr9 1279887 1280374 -116582253 - LTR33 LTR ERVL -8 513 1 1741 216 48 11 chr9 1280450 1280802 -116581825 + MLT1A1 LTR MaLR 1 365 0 4343 145 2 3 chr9 1281435 1282071 -116580556 - MER41B LTR ERV1 0 635 1 473 151 151 0 chr9 1282175 1282281 -116580346 - MIR SINE MIR -85 177 56 268 290 107 30 chr9 1282361 1282492 -116580135 + MIR SINE MIR 117 257 -5 * 630 256 113 10 chr9 1282482 1282677 -116579950 + MIR SINE MIR 11 225 -37 1039 313 35 28 chr9 1282914 1283314 -116579313 + LTR16A LTR ERVL 26 428 -22 5611 301 70 57 chr9 1283326 1284963 -116577664 + HERV16 LTR ERVL 1 1830 -3166 742 181 7 29 chr9 1284963 1285101 -116577526 + FLAM_A SINE Alu 8 142 0 5611 301 70 57 chr9 1285101 1286377 -116576250 + HERV16 LTR ERVL 1830 3089 -1907 858 286 107 39 chr9 1286525 1287214 -116575413 + HERV16 LTR ERVL 3328 4063 -1701 891 350 68 29 chr9 1287551 1288425 -116574202 + HERV16 LTR ERVL 4419 5326 -328 1031 324 58 15 chr9 1288592 1289002 -116573625 + LTR16A LTR ERVL 23 450 0 331 338 60 25 chr9 1289328 1289529 -116573098 - MIR SINE MIR -26 236 29 1218 231 86 52 chr9 1291125 1291510 -116571117 + MER93a LTR ERV1 1 398 -4 656 225 96 28 chr9 1292537 1292715 -116569912 + MER58C DNA MER1_type 26 215 0 487 281 97 17 chr9 1292718 1292956 -116569671 + MIR SINE MIR 5 261 -1 365 254 21 14 chr9 1292978 1293120 -116569507 + (TA)n Simple_repeat Simple_repeat 1 143 0 216 0 0 0 chr9 1293222 1293246 -116569381 + (TC)n Simple_repeat Simple_repeat 2 25 0 * 398 25 88 0 chr9 1293245 1293325 -116569302 + (TA)n Simple_repeat Simple_repeat 2 88 0 2460 76 0 0 chr9 1294731 1295033 -116567594 + AluSc SINE Alu 1 302 -7 3498 124 24 10 chr9 1295037 1295546 -116567081 - L1PA15 LINE L1 -13 6152 5637 4307 155 65 21 chr9 1295550 1296314 -116566313 - L1MA7 LINE L1 0 6291 5485 2106 122 10 0 chr9 1296314 1296609 -116566018 - AluSp SINE Alu -13 300 3 4307 155 65 21 chr9 1296609 1296687 -116565940 - L1MA7 LINE L1 -806 5485 5412 1350 152 5 9 chr9 1296758 1296968 -116565659 + AluJb SINE Alu 86 294 -18 22 0 0 0 chr9 1296973 1296995 -116565632 + AT_rich Low_complexity Low_complexity 1 22 0 243 205 0 121 chr9 1297272 1297355 -116565272 + LTR67 LTR ERVL 468 540 -17 206 268 56 28 chr9 1297893 1297964 -116564663 + L2 LINE L2 3183 3255 -17 26 0 0 0 chr9 1298718 1298744 -116563883 + AT_rich Low_complexity Low_complexity 1 26 0 30930 114 20 57 chr9 1298794 1305197 -116557430 + L1PA8 LINE L1 12 6166 -6 1551 191 150 24 chr9 1305727 1306140 -116556487 - MLT1C LTR MaLR 0 467 3 319 308 51 51 chr9 1306584 1306740 -116555887 + MER5A DNA MER1_type 33 188 -1 5549 195 38 1 chr9 1308169 1309172 -116553455 - MER45B DNA AcHobo 0 1040 1 227 313 88 0 chr9 1309290 1309370 -116553257 + L2 LINE L2 3006 3092 -221 686 211 0 0 chr9 1309416 1309539 -116553088 - MER5A DNA MER1_type -66 123 1 359 321 60 28 chr9 1309539 1309752 -116552875 + L2 LINE L2 3094 3313 0 1771 191 38 24 chr9 1310242 1310614 -116552013 - MLT1B LTR MaLR -6 384 8 204 314 0 29 chr9 1310620 1310690 -116551937 - MER5A DNA MER1_type -103 86 19 221 56 0 28 chr9 1312993 1313029 -116549598 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 16372 31 1 6 chr9 1313029 1313802 -116548825 - L1PA3 LINE L1 -24 6131 5356 2892 10 0 0 chr9 1313802 1314112 -116548515 - AluYa5 SINE Alu -1 310 1 16372 31 1 6 chr9 1314112 1316035 -116546592 - L1PA3 LINE L1 -799 5356 3441 4538 37 0 3 chr9 1316026 1316593 -116546034 + L1PA3 LINE L1 2848 3412 -2734 * 327 322 49 63 chr9 1316835 1316978 -116545649 - L2 LINE L2 -3 3269 3129 1213 122 0 0 chr9 1317980 1318144 -116544483 + AluSg/x SINE Alu 131 294 -16 250 200 57 43 chr9 1318361 1318431 -116544196 - MIR SINE MIR -9 253 183 236 237 158 26 chr9 1318529 1318643 -116543984 + LTR33 LTR ERVL 116 244 -277 775 259 138 50 chr9 1318814 1319134 -116543493 - MLT1J LTR MaLR -102 409 62 318 276 150 8 chr9 1319220 1319347 -116543280 - MIR SINE MIR -93 169 25 260 325 43 17 chr9 1319646 1319763 -116542864 + MIR SINE MIR 16 135 -73 221 286 25 99 chr9 1321700 1321861 -116540766 + L3 LINE CR1 1139 1287 -290 199 315 69 81 chr9 1321857 1322032 -116540595 + L2 LINE L2 3023 3230 -83 * 23 54 0 0 chr9 1322032 1322069 -116540558 + AT_rich Low_complexity Low_complexity 1 37 0 199 315 69 81 chr9 1322069 1322152 -116540475 + L2 LINE L2 3230 3313 0 22 0 0 0 chr9 1324222 1324244 -116538383 + AT_rich Low_complexity Low_complexity 1 22 0 261 320 67 5 chr9 1325574 1325768 -116536859 - L1MEd LINE L1 -4915 1204 999 826 164 15 0 chr9 1325775 1325909 -116536718 - FRAM SINE Alu -3 173 38 283 352 141 12 chr9 1327060 1327316 -116535311 + L2 LINE L2 2982 3270 -2 7300 40 28 0 chr9 1327602 1328915 -116533712 - L1PA4 LINE L1 0 6155 4824 12067 72 15 0 chr9 1328915 1330551 -116532076 - L1P LINE L1 -4485 1661 1 338 245 71 0 chr9 1331303 1331401 -116531226 - MIR3 SINE MIR -6 202 98 43 47 0 0 chr9 1332544 1332608 -116530019 + AT_rich Low_complexity Low_complexity 1 64 0 327 270 155 34 chr9 1333080 1333228 -116529399 + MIR SINE MIR 90 255 -7 246 182 0 0 chr9 1334492 1334536 -116528091 - MER66B LTR ERV1 -142 344 301 1885 251 45 38 chr9 1335937 1336361 -116526266 - HsTC2a DNA Tc2 -1157 743 310 1668 187 33 3 chr9 1336361 1336661 -116525966 - AluJo SINE Alu -3 309 1 1885 251 45 38 chr9 1336661 1336948 -116525679 - HsTC2a DNA Tc2 -1590 310 27 262 299 46 0 chr9 1336989 1337076 -116525551 - L2 LINE L2 -231 3041 2951 326 340 70 22 chr9 1337761 1337946 -116524681 - L2 LINE L2 -406 2908 2715 2121 125 0 0 chr9 1338416 1338712 -116523915 + AluSx SINE Alu 1 296 -16 2110 126 3 0 chr9 1338923 1339224 -116523403 - AluSc SINE Alu -7 302 1 779 249 120 34 chr9 1339333 1339566 -116523061 - MIR SINE MIR -1 261 9 187 31 62 0 chr9 1341392 1341424 -116521203 + A-rich Low_complexity Low_complexity 2 35 0 495 311 119 11 chr9 1341534 1341711 -116520916 + MIR SINE MIR 23 218 -44 2085 128 0 13 chr9 1342521 1342825 -116519802 - AluSx SINE Alu -10 302 3 2364 101 3 0 chr9 1342966 1343274 -116519353 + AluSc SINE Alu 1 309 0 530 277 42 45 chr9 1343855 1344144 -116518483 + Charlie7 DNA MER1_type 1245 1532 -1080 1000 245 61 114 chr9 1344697 1344837 -116517790 - LTR16C LTR ERVL -2 489 343 2255 98 3 0 chr9 1344837 1345133 -116517494 + AluSx SINE Alu 1 297 -15 1000 245 61 114 chr9 1345133 1345481 -116517146 - LTR16C LTR ERVL -148 343 27 978 304 122 29 chr9 1345815 1346298 -116516329 + MLT1G1 LTR MaLR 1 528 -67 417 177 124 9 chr9 1346427 1346540 -116516087 + L1MD3 LINE L1 7670 7795 -200 413 352 82 15 chr9 1346778 1346974 -116515653 - MIR SINE MIR -52 210 2 225 224 40 7 chr9 1347162 1347317 -116515310 + (TA)n Simple_repeat Simple_repeat 1 160 0 2105 189 88 24 chr9 1347455 1348009 -116514618 - L1MD3 LINE L1 -10 7985 7396 409 189 14 0 chr9 1348009 1348083 -116514544 - MLT1F1 LTR MaLR -457 110 36 2009 138 3 3 chr9 1348449 1348746 -116513881 - AluJb SINE Alu -15 297 1 236 223 53 0 chr9 1348817 1348911 -116513716 + (TA)n Simple_repeat Simple_repeat 1 99 0 465 311 53 24 chr9 1348939 1349148 -116513479 - MIR SINE MIR -1 261 47 2705 94 13 5 chr9 1349448 1349820 -116512807 - THE1C LTR MaLR 0 375 1 465 62 0 0 chr9 1350078 1350143 -116512484 + (GA)n Simple_repeat Simple_repeat 2 66 0 224 364 91 8 chr9 1352096 1352228 -116510399 + MIR3 SINE MIR 60 202 -6 203 286 76 59 chr9 1353516 1353635 -116508992 - L3 LINE CR1 -31 1546 1426 432 274 35 30 chr9 1353662 1353863 -116508764 - Charlie8 DNA MER1_type -9 2408 2207 913 239 85 96 chr9 1353909 1354357 -116508270 - Charlie8 DNA MER1_type -1973 444 2 1181 206 0 26 chr9 1354367 1354595 -116508032 + MER58A DNA MER1_type 2 223 -1 262 267 13 13 chr9 1354631 1354706 -116507921 - L3 LINE CR1 -180 1397 1323 612 327 88 22 chr9 1355100 1355552 -116507075 + L2 LINE L2 2832 3313 0 351 277 119 0 chr9 1355908 1356009 -116506618 - MIR SINE MIR -62 146 34 6506 83 3 28 chr9 1356116 1356933 -116505694 - L1PA10 LINE L1 0 6168 5332 2274 103 0 3 chr9 1356933 1357233 -116505394 - AluY SINE Alu -12 299 1 6506 83 3 28 chr9 1357233 1358336 -116504291 - L1PA10 LINE L1 -836 5332 4284 1117 154 18 0 chr9 1358343 1358512 -116504115 + AluSg/x SINE Alu 132 303 -9 909 225 22 13 chr9 1358515 1358746 -116503881 + L1ME1 LINE L1 5891 6123 -43 202 319 26 73 chr9 1358815 1359007 -116503620 - MIR SINE MIR -57 205 19 741 273 80 8 chr9 1359118 1359356 -116503271 - MIR SINE MIR 0 262 8 831 249 131 24 chr9 1360057 1360386 -116502241 - L2 LINE L2 -1 3312 2949 650 378 114 0 chr9 1360533 1360927 -116501700 - L3 LINE CR1 -1104 473 35 332 285 115 6 chr9 1361011 1361176 -116501451 - L1ME4a LINE L1 -4 6117 5935 266 247 55 0 chr9 1362077 1362150 -116500477 + L2 LINE L2 3197 3273 -40 1038 315 57 25 chr9 1362194 1362670 -116499957 - L2 LINE L2 0 3313 2823 980 235 111 60 chr9 1362667 1363080 -116499547 - L2 LINE L2 -876 2438 2005 * 241 313 107 0 chr9 1363855 1363967 -116498660 - MIR SINE MIR -70 192 69 239 222 0 0 chr9 1364640 1364703 -116497924 - LTR66 LTR ERVL -149 461 399 186 43 0 0 chr9 1364711 1364734 -116497893 + (TCTA)n Simple_repeat Simple_repeat 4 26 0 27 29 0 0 chr9 1365465 1365499 -116497128 + AT_rich Low_complexity Low_complexity 1 34 0 351 362 74 23 chr9 1366320 1366804 -116495823 - L2 LINE L2 -914 2400 1892 204 367 22 11 chr9 1367139 1367229 -116495398 + L2 LINE L2 3168 3258 -14 260 333 55 56 chr9 1367269 1367470 -116495157 - MIR SINE MIR -5 203 1 468 286 64 71 chr9 1368163 1368446 -116494181 + L2 LINE L2 2992 3272 0 470 287 6 43 chr9 1368563 1368727 -116493900 - MIR SINE MIR -40 222 65 296 188 14 0 chr9 1368806 1368875 -116493752 + CT-rich Low_complexity Low_complexity 4 73 0 262 306 41 10 chr9 1368907 1369005 -116493622 + MIR SINE MIR 54 154 -108 424 137 1 35 chr9 1369093 1369182 -116493445 - L1MC3 LINE L1 -15 7770 6238 508 261 113 54 chr9 1369185 1369388 -116493239 - MIR SINE MIR -46 216 2 1577 201 35 32 chr9 1370595 1370968 -116491659 + MLT1A2 LTR MaLR 1 374 0 21 57 0 0 chr9 1372757 1372792 -116489835 + AT_rich Low_complexity Low_complexity 1 35 0 1000 294 70 25 chr9 1372882 1373610 -116489017 + HAL1b LINE L1 89 849 -499 343 212 26 26 chr9 1373638 1373751 -116488876 - HAL1b LINE L1 -341 1007 895 1434 208 91 32 chr9 1373760 1374168 -116488459 - Charlie4a DNA MER1_type -63 445 14 1537 174 68 50 chr9 1376133 1376455 -116486172 + MLT2D LTR ERVL 73 480 -35 414 0 0 0 chr9 1376455 1376501 -116486126 + (CA)n Simple_repeat Simple_repeat 1 46 0 1537 174 68 50 chr9 1376501 1376538 -116486089 + MLT2D LTR ERVL 480 515 0 710 282 102 50 chr9 1376802 1377320 -116485307 + L2 LINE L2 527 1071 -2243 948 199 22 0 chr9 1377840 1378018 -116484609 - MER3 DNA MER1_type -19 190 9 831 196 136 11 chr9 1378018 1378202 -116484425 + MER58C DNA MER1_type 1 207 -8 206 379 70 9 chr9 1378574 1378788 -116483839 - L2 LINE L2 -234 3038 2812 201 39 0 0 chr9 1380853 1380879 -116481748 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 3071 166 35 35 chr9 1380880 1381506 -116481121 - MER73 LTR ERVL -18 626 1 3613 119 11 0 chr9 1381678 1382216 -116480411 - L1PA13 LINE L1 -56 6107 5564 2583 32 0 10 chr9 1382482 1382795 -116479832 + AluY SINE Alu 1 310 -1 303 272 174 0 chr9 1382885 1382977 -116479650 + MIR SINE MIR 126 233 -29 216 261 0 46 chr9 1383186 1383251 -116479376 + MIR SINE MIR 157 218 -44 10298 183 48 18 chr9 1383579 1386164 -116476463 - L1MA4A LINE L1 -5 6161 3654 1083 45 0 0 chr9 1386164 1386296 -116476331 - L1PA3 LINE L1 -3 6152 6021 10298 183 48 18 chr9 1386296 1386504 -116476123 - L1MA4A LINE L1 -2512 3654 3454 2006 118 37 0 chr9 1386504 1386800 -116475827 - AluSx SINE Alu -5 307 1 10298 183 48 18 chr9 1386800 1387211 -116475416 - L1MA4A LINE L1 -2712 3454 2849 2184 238 70 57 chr9 1387238 1388378 -116474249 - L1ME LINE L1 -369 5866 4676 279 100 0 0 chr9 1388378 1388418 -116474209 + U5 snRNA snRNA 3 42 -74 2184 238 70 57 chr9 1388418 1388653 -116473974 - L1ME LINE L1 -1559 4676 4446 4690 220 72 32 chr9 1388666 1390399 -116472228 - L1 LINE L1 -2659 4906 3100 2854 272 42 11 chr9 1390411 1391456 -116471171 - L1ME LINE L1 -1802 4413 3337 460 155 0 21 chr9 1392065 1392162 -116470465 - L1MA10 LINE L1 0 6334 6240 268 185 77 0 chr9 1392170 1392235 -116470392 - L1P LINE L1 -2890 3256 3187 1667 248 83 17 chr9 1392248 1392997 -116469630 - L1ME LINE L1 -3143 3072 2275 665 167 32 24 chr9 1393024 1393150 -116469477 + FLAM_C SINE Alu 10 136 -7 2285 94 0 0 chr9 1393152 1393438 -116469189 + AluSp SINE Alu 1 286 -27 1936 83 0 0 chr9 1393438 1393702 -116468925 - THE1B-int LTR MaLR -1316 264 1 2014 132 79 15 chr9 1393702 1394044 -116468583 - THE1B LTR MaLR 0 364 1 480 272 230 25 chr9 1394142 1394643 -116467984 - L1ME LINE L1 -4925 1471 1074 1912 137 20 3 chr9 1394643 1394935 -116467692 - AluSx SINE Alu -15 297 1 480 272 230 25 chr9 1394935 1395149 -116467478 - L1ME LINE L1 -5322 1074 609 1802 211 87 27 chr9 1395295 1395849 -116466778 + L1MC4 LINE L1 7443 8029 -13 346 299 35 62 chr9 1397303 1397447 -116465180 - MIR SINE MIR -108 154 15 721 330 83 29 chr9 1397518 1398000 -116464627 - L2 LINE L2 -2 3311 2804 239 211 0 19 chr9 1398049 1398101 -116464526 + L2 LINE L2 2715 2765 -549 253 364 76 0 chr9 1398674 1398792 -116463835 + L2 LINE L2 3184 3310 -3 199 234 0 117 chr9 1398801 1398878 -116463749 + MIR SINE MIR 58 125 -83 612 283 31 22 chr9 1398949 1399175 -116463452 - MIR SINE MIR -17 245 18 2226 90 6 40 chr9 1399227 1399589 -116463038 - AluY SINE Alu 0 351 1 4276 178 79 13 chr9 1399687 1400954 -116461673 - L1MA8 LINE L1 -4 6287 4936 2462 136 45 12 chr9 1401952 1402370 -116460257 + MSTB1 LTR MaLR 1 432 0 221 344 0 0 chr9 1402421 1402485 -116460142 - MIR SINE MIR -60 148 85 251 222 19 0 chr9 1402557 1402667 -116459960 + CT-rich Low_complexity Low_complexity 1 112 0 210 147 13 53 chr9 1402700 1402775 -116459852 + CT-rich Low_complexity Low_complexity 2 73 0 27 73 0 0 chr9 1403018 1403073 -116459554 + AT_rich Low_complexity Low_complexity 1 55 0 24 32 0 0 chr9 1403121 1403152 -116459475 + AT_rich Low_complexity Low_complexity 1 31 0 1253 124 21 5 chr9 1403355 1403549 -116459078 - L1PA13 LINE L1 -58 6105 5909 1386 247 92 13 chr9 1403593 1404193 -116458434 + MER114 LTR ERV 1 647 -1 598 229 52 60 chr9 1404484 1404733 -116457894 - L1MD2 LINE L1 -17 6342 6096 1196 221 56 21 chr9 1404734 1405065 -116457562 - Tigger7 DNA MER2_type 0 2491 2 1621 246 78 32 chr9 1405066 1405563 -116457064 - L1MD2 LINE L1 -263 6096 5577 1127 233 31 24 chr9 1405766 1406054 -116456573 - L1MD2 LINE L1 -651 5591 5302 2121 50 28 7 chr9 1406056 1406338 -116456289 - L1PA4 LINE L1 0 6155 5868 559 0 15 0 chr9 1406338 1406404 -116456223 + L1PA4 LINE L1 5797 5863 -292 1758 259 56 17 chr9 1406409 1407072 -116455555 - L1MD2 LINE L1 -842 5304 4616 3349 191 59 76 chr9 1407100 1408158 -116454469 - L1MB8 LINE L1 0 6178 5115 183 42 0 0 chr9 1408158 1408182 -116454445 + (TTG)n Simple_repeat Simple_repeat 3 26 0 3349 191 59 76 chr9 1408182 1408237 -116454390 - L1MB8 LINE L1 -1063 5115 5061 * 3382 200 35 15 chr9 1408233 1409422 -116453205 + L1MB5 LINE L1 4699 5953 -225 4357 152 53 13 chr9 1409422 1410216 -116452411 + LTR1B LTR ERV1 1 826 0 3382 200 35 15 chr9 1410216 1410428 -116452199 + L1MB5 LINE L1 5953 6159 -19 855 345 69 35 chr9 1411244 1411792 -116450835 - L3 LINE CR1 -1 1576 1010 386 325 24 16 chr9 1411814 1411937 -116450690 + L2 LINE L2 3141 3264 -8 181 347 0 14 chr9 1412450 1412522 -116450105 - MIR SINE MIR -118 90 20 1929 277 43 5 chr9 1414325 1414910 -116447717 - L1ME3A LINE L1 -23 6147 5541 1932 128 11 3 chr9 1415233 1415515 -116447112 + AluSx SINE Alu 4 287 -25 201 268 0 0 chr9 1415808 1415849 -116446778 - L2 LINE L2 -14 3258 3218 482 239 127 0 chr9 1417156 1417290 -116445337 + MER69 DNA AcHobo 6 156 -1070 1342 99 16 5 chr9 1417312 1417504 -116445123 - AluSc SINE Alu -12 297 104 230 304 64 60 chr9 1417538 1417788 -116444839 - L2 LINE L2 -205 3067 2817 950 88 22 15 chr9 1419389 1419526 -116443101 + MER85 DNA T2_type 1 138 -1 1726 168 42 3 chr9 1419554 1419840 -116442787 - MER50-int LTR ERV1 -6902 303 7 3891 129 32 71 chr9 1419840 1420591 -116442036 - MER50 LTR ERV1 -12 722 1 542 252 60 33 chr9 1420767 1420918 -116441709 + MIR SINE MIR 3 157 -105 21 36 0 0 chr9 1420986 1421014 -116441613 + AT_rich Low_complexity Low_complexity 1 28 0 775 195 15 135 chr9 1421079 1421413 -116441214 - TAR1 Satellite telomeric -1815 296 3 * 1459 186 49 34 chr9 1421208 1421558 -116441069 - LTR60 LTR ERV1 -3 583 229 709 169 83 156 chr9 1421558 1421859 -116440768 - LTR60 LTR ERV1 -307 279 1 792 142 0 8 chr9 1422524 1422644 -116439983 + THE1C LTR MaLR 1 119 -256 * 1049 82 0 0 chr9 1422639 1422773 -116439854 + THE1C LTR MaLR 242 375 0 1731 243 69 40 chr9 1424174 1424882 -116437745 - MER20B DNA MER1_type -5 778 24 1289 252 145 24 chr9 1424882 1425295 -116437332 - LTR16B LTR ERVL 0 464 2 3929 135 64 70 chr9 1426386 1427170 -116435457 + LTR1 LTR ERV1 7 785 0 348 234 58 88 chr9 1428523 1428660 -116433967 + L2 LINE L2 3122 3254 -18 667 329 82 47 chr9 1429089 1429448 -116433179 - MLT1K LTR MaLR -17 571 185 1663 155 59 98 chr9 1429448 1429854 -116432773 + MLT1B LTR MaLR 1 390 0 667 329 82 47 chr9 1429854 1430029 -116432598 - MLT1K LTR MaLR -403 185 18 3011 141 22 59 chr9 1430623 1430854 -116431773 + MER4B LTR ERV1 1 239 -371 1180 122 168 0 chr9 1430854 1431050 -116431577 + MER30 DNA MER1_type 1 229 -1 3011 141 22 59 chr9 1431050 1431414 -116431213 + MER4B LTR ERV1 239 574 -36 227 296 61 10 chr9 1431616 1431714 -116430913 + LTR33 LTR ERVL 112 214 -307 555 266 44 25 chr9 1431768 1431971 -116430656 + LTR33 LTR ERVL 308 514 -7 531 246 10 74 chr9 1432082 1432285 -116430342 + MIR SINE MIR 63 252 -10 930 303 92 10 chr9 1432331 1432731 -116429896 - LTR16A LTR ERVL 0 450 18 1694 310 63 31 chr9 1433050 1434087 -116428540 - HERV16 LTR ERVL -300 5026 4066 512 342 38 14 chr9 1434423 1434804 -116427823 - HERV16 LTR ERVL -2060 3704 3288 815 122 0 0 chr9 1485123 1485246 -116377381 + MLT2A2 LTR ERVL 301 423 -30 237 322 26 0 chr9 1485281 1485396 -116377231 - LTR40c LTR ERVL -177 288 171 6364 168 27 7 chr9 1486062 1488260 -116374367 + L1PB3 LINE L1 3911 6153 -1 288 301 76 51 chr9 1489321 1489504 -116373123 + MIR SINE MIR 37 220 -42 495 245 1 2 chr9 1490463 1490607 -116372020 + L1MA10 LINE L1 6003 6304 -23 809 233 38 38 chr9 1490612 1490904 -116371723 - LTR13 LTR ERVK -715 292 1 620 111 0 0 chr9 1490904 1490993 -116371634 + MER4E LTR ERV1 129 217 -562 788 93 0 0 chr9 1490991 1491098 -116371529 + MER4E LTR ERV1 660 766 0 898 226 19 33 chr9 1491142 1491354 -116371273 - MER63A DNA MER1_type 0 210 2 215 227 0 0 chr9 1491354 1491398 -116371229 + (TATATG)n Simple_repeat Simple_repeat 2 45 0 197 211 18 0 chr9 1491415 1491472 -116371155 + (TG)n Simple_repeat Simple_repeat 2 59 0 23 0 0 0 chr9 1491633 1491656 -116370971 + AT_rich Low_complexity Low_complexity 1 23 0 28 48 0 0 chr9 1491785 1491827 -116370800 + AT_rich Low_complexity Low_complexity 1 42 0 540 273 68 18 chr9 1492276 1492455 -116370172 - MIR SINE MIR -51 211 20 4199 189 40 9 chr9 1494156 1495506 -116367121 + L1MB5 LINE L1 4789 6174 0 244 182 18 36 chr9 1495860 1495915 -116366712 + (TAGG)n Simple_repeat Simple_repeat 4 57 0 2277 198 4 26 chr9 1495915 1496384 -116366243 - MLT2B2 LTR ERVL -48 467 9 308 102 0 17 chr9 1496384 1496443 -116366184 - ERVL-B2 LTR ERVL -8 5756 5699 * 1096 172 5 15 chr9 1496441 1496644 -116365983 - ERVL LTR ERVL -1423 4341 4141 41015 48 4 1 chr9 1497626 1503760 -116358867 + L1PA4 LINE L1 4 6155 0 302 300 100 19 chr9 1503907 1504067 -116358560 + L1ME4a LINE L1 5255 5427 -932 514 302 56 28 chr9 1504143 1504501 -116358126 + L1ME4a LINE L1 5566 5933 -188 759 195 7 7 chr9 1504855 1505004 -116357623 + MER106B DNA MER1_type 7 155 -904 4624 178 30 51 chr9 1505033 1505193 -116357434 - L1MA9 LINE L1 0 6548 6386 1720 99 114 33 chr9 1505193 1505466 -116357161 - AluSg SINE Alu -15 295 1 4624 178 30 51 chr9 1505466 1507478 -116355149 - L1MA9 LINE L1 -162 6386 4425 905 217 54 27 chr9 1507659 1508192 -116354435 - L1MA9 LINE L1 -4177 2206 1146 40511 38 21 1 chr9 1508210 1514239 -116348388 - L1PA3 LINE L1 -1 6154 3 2335 257 46 33 chr9 1514239 1515555 -116347072 - L1M3c LINE L1 -4739 2298 958 1359 193 0 7 chr9 1515555 1515829 -116346798 - L1M3c LINE L1 -6758 272 1 24 77 0 0 chr9 1515841 1515893 -116346734 + AT_rich Low_complexity Low_complexity 1 52 0 240 100 0 0 chr9 1516310 1516350 -116346277 + (CA)n Simple_repeat Simple_repeat 2 41 0 739 223 81 12 chr9 1517515 1517642 -116344985 - L1MD3 LINE L1 -2 7993 7876 2090 141 0 0 chr9 1517642 1517946 -116344681 + AluSx SINE Alu 1 304 -8 739 223 81 12 chr9 1517946 1518065 -116344562 - L1MD3 LINE L1 -119 7876 7730 462 303 8 8 chr9 1518364 1518486 -116344141 - MIR3 SINE MIR -29 179 58 236 170 19 0 chr9 1518549 1518602 -116344025 + (TA)n Simple_repeat Simple_repeat 2 55 0 314 341 8 38 chr9 1519490 1519622 -116343005 + MIR SINE MIR 8 135 -73 498 228 128 13 chr9 1520048 1520197 -116342430 + MLT1D LTR MaLR 1 166 -339 372 174 76 0 chr9 1520210 1520302 -116342325 + MLT1D LTR MaLR 407 505 0 325 325 118 14 chr9 1520607 1520819 -116341808 + MIR SINE MIR 14 247 -15 262 316 53 0 chr9 1520933 1521009 -116341618 - L2 LINE L2 -35 3278 3199 2276 101 29 9 chr9 1521739 1522087 -116340540 - L1PA7 LINE L1 -1 6153 5799 1157 266 91 54 chr9 1522130 1522645 -116339982 - L1M4 LINE L1 -5856 686 153 * 22100 50 19 1 chr9 1522643 1526901 -116335726 - L1PA5 LINE L1 0 6154 1834 373 205 13 0 chr9 1527001 1527079 -116335548 + L1 LINE L1 4138 4216 -1930 1426 183 9 68 chr9 1527102 1527425 -116335202 - MLT2A2 LTR ERVL -149 304 1 264 277 42 42 chr9 1527442 1527561 -116335066 + LTR40b LTR ERVL 305 423 -39 238 154 77 43 chr9 1528409 1528526 -116334101 + (TTAA)n Simple_repeat Simple_repeat 4 124 0 182 330 75 32 chr9 1528539 1528633 -116333994 - L2 LINE L2 -17 3255 3158 398 332 108 56 chr9 1528796 1529064 -116333563 + L2 LINE L2 2987 3268 -4 2711 210 46 48 chr9 1529162 1529996 -116332631 + L1ME1 LINE L1 5254 6243 -91 201 154 0 0 chr9 1530007 1530046 -116332581 + (TG)n Simple_repeat Simple_repeat 2 40 0 28 86 0 0 chr9 1530804 1530874 -116331753 + AT_rich Low_complexity Low_complexity 1 70 0 207 100 0 0 chr9 1531088 1531118 -116331509 + (TG)n Simple_repeat Simple_repeat 1 30 0 266 296 0 0 chr9 1531118 1531216 -116331411 + GA-rich Low_complexity Low_complexity 2 99 0 467 360 7 7 chr9 1532047 1532200 -116330427 + MIR SINE MIR 33 185 -77 1194 131 23 0 chr9 1532844 1533106 -116329521 - L1MA10 LINE L1 -568 5766 5420 2527 184 19 25 chr9 1533106 1533672 -116328955 + L1MA10 LINE L1 5762 6324 -10 224 240 53 27 chr9 1533872 1533947 -116328680 - MIR SINE MIR -30 232 156 433 336 159 17 chr9 1534008 1534424 -116328203 - L2 LINE L2 0 3313 2839 758 263 56 117 chr9 1535059 1535596 -116327031 + LTR33 LTR ERVL 3 506 -15 398 236 154 0 chr9 1535678 1535788 -116326839 - MIR SINE MIR -99 163 37 1917 275 91 15 chr9 1536573 1537491 -116325136 - L1ME3A LINE L1 -5 6165 5175 376 183 238 16 chr9 1537636 1537762 -116324865 + MER21B LTR ERV1 662 815 -48 560 186 180 0 chr9 1537824 1537985 -116324642 + L1MC5 LINE L1 7712 7901 -60 481 335 17 30 chr9 1538003 1538239 -116324388 - L2 LINE L2 -1480 1834 1602 732 292 83 74 chr9 1538265 1538548 -116324079 - L2 LINE L2 -340 2974 2695 417 20 0 0 chr9 1538548 1538598 -116324029 + (TG)n Simple_repeat Simple_repeat 2 51 0 732 292 83 74 chr9 1538598 1538724 -116323903 - L2 LINE L2 -619 2695 2558 1583 249 46 20 chr9 1538724 1539177 -116323450 + MLT1C LTR MaLR 1 465 -2 732 292 83 74 chr9 1539177 1539211 -116323416 - L2 LINE L2 -756 2558 2526 58 102 0 0 chr9 1539211 1539416 -116323211 + AT_rich Low_complexity Low_complexity 1 205 0 403 267 91 91 chr9 1539546 1539864 -116322763 + L1ME4a LINE L1 4669 4986 -1160 42951 48 4 1 chr9 1539970 1546104 -116316523 + L1PA4 LINE L1 4 6155 0 228 300 9 9 chr9 1546301 1546411 -116316216 + L1P LINE L1 5318 5427 -724 597 304 50 22 chr9 1546487 1546845 -116315782 + L1ME4a LINE L1 5566 5933 -188 810 195 7 7 chr9 1547199 1547348 -116315279 + MER106B DNA MER1_type 7 155 -904 4951 178 30 51 chr9 1547377 1547537 -116315090 - L1MA9 LINE L1 0 6548 6386 1704 99 114 33 chr9 1547537 1547810 -116314817 - AluSg SINE Alu -15 295 1 4951 178 30 51 chr9 1547810 1549822 -116312805 - L1MA9 LINE L1 -162 6386 4425 972 227 66 32 chr9 1549810 1550536 -116312091 - L1MA9 LINE L1 -4177 2206 1146 * 40220 63 12 5 chr9 1550554 1556653 -116305974 - L1PA2 LINE L1 -1 6154 11 490 256 17 59 chr9 1556673 1556906 -116305721 - L1ME LINE L1 -690 5480 5256 314 304 81 40 chr9 1556915 1557063 -116305564 + MLT1D LTR MaLR 3 156 -349 1441 240 58 0 chr9 1557091 1557525 -116305102 + L1MB5 LINE L1 4114 4572 -1574 4433 179 21 26 chr9 1557535 1558441 -116304186 + L1MB5 LINE L1 5254 6154 -20 478 285 60 35 chr9 1558504 1558704 -116303923 - MLT1J2 LTR MaLR -241 209 5 242 297 66 22 chr9 1558707 1558798 -116303829 + MER5A DNA MER1_type 93 187 -2 359 21 21 0 chr9 1559767 1559815 -116302812 + (CA)n Simple_repeat Simple_repeat 2 50 0 3611 208 49 76 chr9 1559862 1559954 -116302673 + L1MB8 LINE L1 4021 4114 -2032 3625 72 4 6 chr9 1559954 1560441 -116302186 - L1PA8 LINE L1 -3 6169 5684 3611 208 49 76 chr9 1560441 1561645 -116300982 + L1MB8 LINE L1 4114 5282 -864 23 78 0 0 chr9 1561646 1561697 -116300930 + AT_rich Low_complexity Low_complexity 1 51 0 3187 192 74 44 chr9 1561752 1562618 -116300009 + L1MB8 LINE L1 5285 6176 -2 243 0 0 0 chr9 1562741 1562768 -116299859 + (TG)n Simple_repeat Simple_repeat 2 28 0 1496 208 38 38 chr9 1563372 1563719 -116298908 - MLT1A1 LTR MaLR 0 365 19 418 296 13 72 chr9 1563784 1563936 -116298691 + MIR SINE MIR 76 218 -44 5417 128 20 9 chr9 1564105 1564996 -116297631 - L1PB3 LINE L1 0 6154 5254 338 336 41 0 chr9 1565068 1565190 -116297437 - MIR3 SINE MIR -21 187 61 184 156 47 94 chr9 1565844 1565908 -116296719 + MIR SINE MIR 70 130 -132 193 311 0 0 chr9 1566268 1566313 -116296314 + MIR SINE MIR 196 240 -22 * 209 308 0 0 chr9 1566279 1566331 -116296296 + L2 LINE L2 3252 3303 -10 1958 145 7 0 chr9 1568059 1568355 -116294272 + AluSx SINE Alu 1 298 -14 411 196 38 0 chr9 1568359 1568517 -116294110 + (TA)n Simple_repeat Simple_repeat 2 165 0 469 211 11 0 chr9 1568532 1568622 -116294005 - LTR16C LTR ERVL -2 489 399 495 235 38 0 chr9 1571250 1571382 -116291245 - Charlie4 DNA MER1_type -1 1960 1824 911 182 21 42 chr9 1572344 1572536 -116290091 - MER5A DNA MER1_type -1 188 1 192 200 0 0 chr9 1572733 1572778 -116289849 + T-rich Low_complexity Low_complexity 1 45 0 25 0 0 0 chr9 1575160 1575185 -116287442 + AT_rich Low_complexity Low_complexity 1 25 0 595 242 149 6 chr9 1576085 1576246 -116286381 - MER5A DNA MER1_type 0 189 6 26 0 0 0 chr9 1576842 1576868 -116285759 + AT_rich Low_complexity Low_complexity 1 26 0 640 87 39 0 chr9 1577171 1577275 -116285352 + L1MA3 LINE L1 6198 6305 0 593 235 15 0 chr9 1577395 1577527 -116285100 + MER94 DNA DNA 1 134 0 2160 101 0 10 chr9 1577572 1577870 -116284757 + AluSg SINE Alu 6 300 -10 215 268 106 101 chr9 1577891 1578089 -116284538 - L3 LINE CR1 -100 1477 1279 434 292 5 103 chr9 1578259 1578454 -116284173 - L3 LINE CR1 -30 1547 1372 292 340 64 32 chr9 1579169 1579357 -116283270 + MIR3 SINE MIR 10 203 -5 1818 166 7 3 chr9 1580081 1580377 -116282250 - AluJb SINE Alu -15 297 1 339 308 89 0 chr9 1580881 1581027 -116281600 + Charlie8 DNA MER1_type 85 243 -2174 315 295 150 52 chr9 1582545 1582738 -116279889 + MIR SINE MIR 46 257 -5 205 325 163 12 chr9 1583200 1583360 -116279267 + L2 LINE L2 2157 2340 -974 2478 174 8 32 chr9 1583414 1583886 -116278741 - MER70B LTR ERVL -117 461 1 395 366 31 26 chr9 1584232 1584599 -116278028 + L2 LINE L2 2693 3053 -219 228 241 48 24 chr9 1584643 1584726 -116277901 + MLT1I LTR MaLR 130 214 -195 268 385 117 6 chr9 1584903 1585082 -116277545 + L2 LINE L2 3070 3268 -4 629 302 155 22 chr9 1585289 1585690 -116276937 - LTR33 LTR ERVL -2 519 66 408 261 137 70 chr9 1585832 1586073 -116276554 + L2 LINE L2 2980 3236 -36 199 283 0 0 chr9 1586561 1586614 -116276013 + MIR SINE MIR 76 128 -80 198 0 0 0 chr9 1587691 1587713 -116274914 + (CAG)n Simple_repeat Simple_repeat 1 22 0 420 284 43 7 chr9 1588229 1588370 -116274257 - L2 LINE L2 0 3313 3168 434 345 40 22 chr9 1588700 1588743 -116273884 - L2 LINE L2 -543 2771 2730 477 277 9 0 chr9 1588743 1588855 -116273772 - MER81 DNA DNA -1 113 1 434 345 40 22 chr9 1588855 1589037 -116273590 - L2 LINE L2 -584 2730 2542 1743 168 58 28 chr9 1589090 1589454 -116273173 - THE1C LTR MaLR 0 375 1 5122 132 11 19 chr9 1589454 1590302 -116272325 - THE1C-int LTR MaLR 0 1580 740 1817 116 21 0 chr9 1590306 1590591 -116272036 - THE1C-int LTR MaLR -1184 396 106 5342 108 13 12 chr9 1590591 1591411 -116271216 + HERVL-B3 LTR ERVL 4834 5654 0 1931 215 50 59 chr9 1591411 1591970 -116270657 + MLT2B3 LTR ERVL 1 554 0 807 309 139 14 chr9 1591993 1592498 -116270129 - L2 LINE L2 -826 2488 1921 452 111 0 0 chr9 1592499 1592562 -116270065 + AluJ/FRAM SINE Alu 233 295 -17 201 375 60 39 chr9 1592570 1592802 -116269825 - L2 LINE L2 -1391 1923 1687 250 276 43 43 chr9 1592978 1593094 -116269533 + L2 LINE L2 2595 2710 -604 735 224 37 8 chr9 1593100 1593345 -116269282 + L1MD2 LINE L1 2346 2597 -3943 3408 213 42 21 chr9 1593350 1593550 -116269077 + L1MD2 LINE L1 5482 5676 -1077 2068 84 7 15 chr9 1593550 1593824 -116268803 + AluY SINE Alu 22 293 -18 3408 213 42 21 chr9 1593824 1594642 -116267985 + L1MD2 LINE L1 5676 6538 -215 346 224 10 0 chr9 1594631 1594729 -116267898 + L1MC1 LINE L1 5204 5302 -844 * 271 203 0 0 chr9 1594770 1594829 -116267798 + L1MC1 LINE L1 5292 5350 -983 1019 153 20 10 chr9 1594839 1595035 -116267592 + L1MC1 LINE L1 5571 5768 -565 3065 180 38 19 chr9 1595039 1595637 -116266990 + L1MC1 LINE L1 5356 5941 -301 6220 57 1 1 chr9 1595637 1596412 -116266215 + L1PA6 LINE L1 5367 6141 -13 3065 180 38 19 chr9 1596412 1596437 -116266190 + L1MC1 LINE L1 5941 5964 -278 1671 205 19 3 chr9 1596437 1596803 -116265824 + L1MC1 LINE L1 5962 6333 0 3065 180 38 19 chr9 1596803 1597053 -116265574 + L1MC1 LINE L1 5964 6242 0 654 329 111 23 chr9 1597055 1597169 -116265458 + L2 LINE L2 2708 2811 -502 186 43 0 0 chr9 1597169 1597192 -116265435 + (TC)n Simple_repeat Simple_repeat 2 24 0 654 329 111 23 chr9 1597192 1597630 -116264997 + L2 LINE L2 2811 3312 -1 1075 149 97 154 chr9 1598339 1598722 -116263905 - MLT1A2 LTR MaLR -12 362 2 2897 6 0 0 chr9 1598967 1599281 -116263346 - AluYb8 SINE Alu -4 314 1 1635 264 128 38 chr9 1599380 1600331 -116262296 + L2 LINE L2 2032 3120 -193 2245 162 26 33 chr9 1600331 1600751 -116261876 + MER47B DNA MER2_type 1 417 -1 1635 264 128 38 chr9 1600751 1600960 -116261667 + L2 LINE L2 3120 3309 -4 197 200 25 0 chr9 1600963 1601003 -116261624 - MIR SINE MIR -63 145 105 2016 107 13 3 chr9 1601055 1601372 -116261255 - L1PA15 LINE L1 -582 5583 5264 3417 130 23 5 chr9 1601372 1601933 -116260694 + L1PA15 LINE L1 5595 6165 0 394 325 12 35 chr9 1603430 1603599 -116259028 - MER5B DNA MER1_type 0 178 14 302 274 51 45 chr9 1603766 1603923 -116258704 + MIR SINE MIR 80 237 -25 502 289 151 0 chr9 1604314 1604466 -116258161 + MER5A DNA MER1_type 9 183 -6 407 267 223 5 chr9 1606148 1606350 -116256277 - MER112 DNA MER1_type -7 253 8 1123 127 16 37 chr9 1606542 1606731 -116255896 + MER5A DNA MER1_type 5 189 0 237 248 23 39 chr9 1607591 1607720 -116254907 + (CA)n Simple_repeat Simple_repeat 1 127 0 304 118 29 0 chr9 1607753 1607821 -116254806 + (CA)n Simple_repeat Simple_repeat 1 70 0 2417 69 0 3 chr9 1607981 1608285 -116254342 + AluY SINE Alu 1 303 -8 1924 169 0 3 chr9 1608409 1608705 -116253922 + AluJb SINE Alu 3 297 -15 260 280 107 39 chr9 1608723 1609059 -116253568 + L1M4 LINE L1 3587 3945 -2201 4021 211 34 36 chr9 1609070 1610195 -116252432 - L1MB3 LINE L1 -3 6163 5036 1780 188 26 0 chr9 1610195 1610499 -116252128 - AluJb SINE Alu 0 312 1 4021 211 34 36 chr9 1610499 1611473 -116251154 - L1MB3 LINE L1 -1130 5036 4062 2795 239 71 2 chr9 1611460 1612332 -116250295 - L1MB3 LINE L1 -2319 3810 2879 * 2414 62 0 28 chr9 1612549 1612869 -116249758 - AluY SINE Alu 0 311 1 396 73 0 0 chr9 1612874 1612929 -116249698 + L1PA6 LINE L1 6094 6148 -6 1899 222 103 2 chr9 1613038 1613493 -116249134 + MLT1D LTR MaLR 1 501 -4 898 274 114 76 chr9 1613562 1614511 -116248116 - L1MB3 LINE L1 -4862 1257 335 2566 114 5 11 chr9 1614511 1614888 -116247739 - THE1C LTR MaLR 0 375 1 898 274 114 76 chr9 1614888 1615226 -116247401 - L1MB3 LINE L1 -5784 335 11 991 208 97 143 chr9 1615232 1615818 -116246809 - MLT1F1 LTR MaLR 0 567 17 1999 191 12 10 chr9 1615842 1616251 -116246376 - L1PA16 LINE L1 0 6166 5757 894 245 100 121 chr9 1616301 1617134 -116245493 + L1ME4a LINE L1 5307 6121 0 413 331 22 43 chr9 1617436 1617620 -116245007 - MIR SINE MIR -50 212 33 184 395 47 12 chr9 1617654 1617740 -116244887 - L2 LINE L2 -28 3244 3156 417 86 0 0 chr9 1618524 1618582 -116244045 + (TAA)n Simple_repeat Simple_repeat 3 60 0 200 257 57 14 chr9 1618698 1618768 -116243859 + MIR SINE MIR 58 130 -78 567 228 78 71 chr9 1618837 1619092 -116243535 - MIR SINE MIR -1 261 5 485 361 50 4 chr9 1619666 1619904 -116242723 + MIR SINE MIR 8 256 -6 239 279 15 0 chr9 1622014 1622082 -116240545 + MIR SINE MIR 178 246 -16 8312 198 31 17 chr9 1622451 1625322 -116237305 - L1PA16 LINE L1 -9 6157 3311 671 245 14 0 chr9 1626201 1626348 -116236279 - MIR SINE MIR -111 151 3 24 0 0 0 chr9 1626878 1626902 -116235725 + AT_rich Low_complexity Low_complexity 1 24 0 266 260 0 26 chr9 1627053 1627130 -116235497 + CT-rich Low_complexity Low_complexity 2 76 0 516 222 71 142 chr9 1629071 1629395 -116233232 + MLT1J2 LTR MaLR 150 450 0 27 0 0 0 chr9 1629526 1629553 -116233074 + AT_rich Low_complexity Low_complexity 1 27 0 255 300 0 0 chr9 1629624 1629694 -116232933 - L2 LINE L2 0 3313 3244 240 345 36 9 chr9 1629807 1629917 -116232710 - L2 LINE L2 -91 3222 3110 34 24 0 0 chr9 1630636 1630677 -116231950 + AT_rich Low_complexity Low_complexity 1 41 0 625 245 19 26 chr9 1631069 1631278 -116231349 - MIR SINE MIR 0 262 8 181 303 110 58 chr9 1632081 1632236 -116230391 + L3b LINE CR1 1225 1387 -196 321 260 20 82 chr9 1632329 1632475 -116230152 - MIR SINE MIR -56 206 70 279 0 0 0 chr9 1632786 1632817 -116229810 + (A)n Simple_repeat Simple_repeat 1 31 0 630 175 0 0 chr9 1632892 1633006 -116229621 - L1MB8 LINE L1 -2 6176 6063 307 331 97 36 chr9 1633381 1633795 -116228832 + L2 LINE L2 2267 2705 -609 3377 111 4 14 chr9 1633795 1634300 -116228327 + Charlie3 DNA MER1_type 1 500 -2210 404 119 0 0 chr9 1634294 1634353 -116228274 + Charlie3 DNA MER1_type 2242 2300 -410 * 3024 97 2 50 chr9 1634356 1634840 -116227787 + Charlie3 DNA MER1_type 2245 2705 -5 180 356 20 89 chr9 1634842 1635044 -116227583 + L2 LINE L2 2699 2886 -428 2505 61 0 0 chr9 1635119 1635430 -116227197 - AluY SINE Alu 0 311 1 261 290 0 0 chr9 1635658 1635727 -116226900 + L2 LINE L2 3196 3264 -8 1993 196 70 32 chr9 1635813 1636344 -116226283 + L1MB3 LINE L1 5625 6175 -8 2351 148 0 3 chr9 1636344 1636710 -116225917 + MLT1A1 LTR MaLR 1 365 0 348 359 27 29 chr9 1636720 1636889 -116225738 + MIR3 SINE MIR 20 191 -17 328 296 49 0 chr9 1637130 1637211 -116225416 - L2 LINE L2 -2 3270 3186 231 200 0 0 chr9 1638240 1638280 -116224347 - L2 LINE L2 -12 3301 3262 200 313 138 12 chr9 1638373 1638453 -116224174 - MIR SINE MIR -53 209 120 * 231 344 56 11 chr9 1638436 1638526 -116224101 + MIR SINE MIR 28 121 -87 1353 190 26 95 chr9 1638619 1639041 -116223586 - MSTD LTR MaLR 0 396 4 5602 237 84 27 chr9 1639058 1640684 -116221943 - MSTD-int LTR MaLR -15 1720 2 979 172 59 25 chr9 1640686 1640890 -116221737 - MSTD LTR MaLR 0 396 186 2298 125 0 0 chr9 1641243 1641555 -116221072 - AluSx SINE Alu 0 312 1 349 293 96 19 chr9 1642821 1642978 -116219649 - MIR3 SINE MIR 0 208 40 367 277 85 57 chr9 1643602 1643779 -116218848 + MIR SINE MIR 35 216 -46 932 303 92 10 chr9 1643781 1644193 -116218434 - LTR16A LTR ERVL -4 446 1 358 350 12 8 chr9 1644334 1644616 -116218011 - ERVL LTR ERVL -327 5327 5046 563 356 35 23 chr9 1644650 1645164 -116217463 - ERVL LTR ERVL -754 4900 4436 633 315 36 47 chr9 1645286 1645788 -116216839 - ERVL LTR ERVL -2020 3634 3137 738 317 75 13 chr9 1645824 1646130 -116216497 - ERVL LTR ERVL -1912 3084 2760 3779 290 51 11 chr9 1646131 1647437 -116215190 - HERV16 LTR ERVL -3480 1516 158 420 364 65 16 chr9 1648691 1648875 -116213752 + MIR3 SINE MIR 1 193 -15 345 345 39 97 chr9 1648895 1649309 -116213318 - L2 LINE L2 0 3272 2883 540 286 120 36 chr9 1649762 1650855 -116211772 - L1MDb LINE L1 -3660 2555 1398 315 278 7 48 chr9 1650867 1651127 -116211500 - L1MDb LINE L1 -5097 1108 857 305 339 36 9 chr9 1651785 1651897 -116210730 - L1MDb LINE L1 -5953 252 138 253 254 0 0 chr9 1653922 1653985 -116208642 + GA-rich Low_complexity Low_complexity 2 64 0 954 188 18 61 chr9 1654294 1654486 -116208141 + MER20 DNA MER1_type 1 183 -36 2067 212 125 64 chr9 1654486 1655263 -116207364 - LTR1B LTR ERV1 0 826 3 954 188 18 61 chr9 1655263 1655299 -116207328 + MER20 DNA MER1_type 183 219 0 2015 137 3 3 chr9 1655439 1655738 -116206889 - AluSx SINE Alu -11 301 3 21 36 0 0 chr9 1655870 1655898 -116206729 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr9 1655991 1656026 -116206601 + AT_rich Low_complexity Low_complexity 1 35 0 311 269 50 55 chr9 1656263 1656464 -116206163 - HAL1 LINE L1 -10 2497 2298 1266 298 109 10 chr9 1656476 1656989 -116205638 + Zaphod DNA AcHobo 44 607 -3424 2668 177 23 86 chr9 1656995 1657725 -116204902 - L1MC2 LINE L1 -2 6342 5659 642 254 83 99 chr9 1657723 1658583 -116204044 - L1ME LINE L1 -4968 1088 272 * 438 320 59 51 chr9 1658714 1659123 -116203504 - L1ME LINE L1 -5610 460 49 9598 224 46 29 chr9 1659175 1659687 -116202940 + L1MB2 LINE L1 1964 2466 -3941 12873 30 5 0 chr9 1659687 1662001 -116200626 + L1PA3 LINE L1 3833 6152 -3 9598 224 46 29 chr9 1662001 1665840 -116196787 + L1MB2 LINE L1 2466 6400 -7 1851 276 105 63 chr9 1665852 1666003 -116196624 - HAL1 LINE L1 -542 1965 1822 2512 74 3 0 chr9 1666003 1666312 -116196315 - AluSp SINE Alu -3 310 1 1851 276 105 63 chr9 1666312 1667942 -116194685 - HAL1 LINE L1 -685 1822 110 1034 184 23 122 chr9 1668551 1668894 -116193733 + MLT1A1 LTR MaLR 1 309 -56 196 29 0 57 chr9 1669851 1669886 -116192741 + (TTG)n Simple_repeat Simple_repeat 3 35 0 267 114 0 0 chr9 1670759 1670803 -116191824 + (CA)n Simple_repeat Simple_repeat 2 45 0 194 315 0 0 chr9 1671395 1671449 -116191178 - L2 LINE L2 -5 3308 3255 22 35 0 0 chr9 1671887 1671916 -116190711 + AT_rich Low_complexity Low_complexity 1 29 0 198 100 50 25 chr9 1672256 1672296 -116190331 + MIR SINE MIR 101 141 -67 2402 44 14 14 chr9 1672335 1672631 -116189996 + AluY SINE Alu 1 296 -15 777 193 0 40 chr9 1672709 1672885 -116189742 + MER3 DNA MER1_type 4 125 -84 248 148 19 56 chr9 1673590 1673644 -116188983 - MIR SINE MIR -79 183 132 242 253 53 13 chr9 1673871 1673946 -116188681 + L2 LINE L2 3194 3271 -1 5291 94 8 7 chr9 1673966 1674731 -116187896 + MER4E LTR ERV1 1 766 0 637 224 109 0 chr9 1675259 1675433 -116187194 + L1MC1 LINE L1 6141 6333 0 223 312 56 56 chr9 1675658 1675783 -116186844 + L2 LINE L2 3134 3258 -14 1240 180 25 109 chr9 1675885 1676279 -116186348 + MLT1A1 LTR MaLR 1 361 -4 669 269 55 43 chr9 1679969 1680225 -116182402 + MIR SINE MIR 4 262 0 23 54 0 0 chr9 1680574 1680611 -116182016 + AT_rich Low_complexity Low_complexity 1 37 0 243 220 0 34 chr9 1681440 1681499 -116181128 + (CATA)n Simple_repeat Simple_repeat 3 59 0 284 183 21 0 chr9 1681629 1681697 -116180930 - MER5A DNA MER1_type -116 73 4 640 196 0 0 chr9 1681721 1681828 -116180799 - AluSx SINE Alu -20 292 186 851 86 0 0 chr9 1681828 1681933 -116180694 - AluSx SINE Alu -207 105 1 657 350 60 53 chr9 1681988 1682761 -116179866 + L2 LINE L2 2481 3271 -1 1799 111 4 8 chr9 1682820 1683072 -116179555 + AluSq SINE Alu 12 262 -51 806 108 8 0 chr9 1683072 1683192 -116179435 + AluSp/q SINE Alu 190 310 -3 355 314 20 10 chr9 1683657 1683759 -116178868 + LTR67 LTR ERVL 115 217 -340 1238 251 5 64 chr9 1683790 1684180 -116178447 - L2 LINE L2 0 3313 2947 436 210 87 118 chr9 1684305 1684500 -116178127 + LTR67 LTR ERVL 361 549 -8 230 267 68 93 chr9 1684912 1684940 -116177687 + MER104 DNA Tc2 2 29 -1869 1853 145 0 30 chr9 1684940 1685260 -116177367 - AluSx SINE Alu 0 312 2 230 267 68 93 chr9 1685260 1685392 -116177235 + MER104 DNA Tc2 29 158 -22 3276 169 58 2 chr9 1685936 1686520 -116176107 - MER73 LTR ERVL 0 644 28 385 291 78 47 chr9 1687047 1687305 -116175322 - MLT1H LTR MaLR -204 345 80 207 321 43 62 chr9 1687473 1687635 -116174992 - MIR SINE MIR -6 256 98 216 0 0 0 chr9 1688467 1688491 -116174136 + (TA)n Simple_repeat Simple_repeat 2 25 0 241 224 20 0 chr9 1689157 1689206 -116173421 + GA-rich Low_complexity Low_complexity 4 53 0 838 246 212 15 chr9 1689811 1690136 -116172491 - MLT1J2 LTR MaLR -18 432 44 331 273 91 10 chr9 1690163 1690262 -116172365 - MIR SINE MIR -65 143 37 308 314 86 14 chr9 1691613 1691753 -116170874 + L2 LINE L2 3121 3270 -2 1745 226 12 0 chr9 1691846 1692183 -116170444 - MER58B DNA MER1_type 0 341 1 27 29 0 0 chr9 1692687 1692721 -116169906 + AT_rich Low_complexity Low_complexity 1 34 0 2075 113 44 10 chr9 1692812 1693105 -116169522 + AluSx SINE Alu 1 303 -9 614 328 70 29 chr9 1693291 1693532 -116169095 + MIR SINE MIR 12 262 0 259 357 134 0 chr9 1694443 1694555 -116168072 + MIR3 SINE MIR 55 181 -27 326 320 107 46 chr9 1694937 1695330 -116167297 + L2 LINE L2 2620 3034 -238 417 349 178 25 chr9 1695702 1696017 -116166610 - L2 LINE L2 -371 2943 2581 * 857 111 16 148 chr9 1696007 1696196 -116166431 - MER5A DNA MER1_type -25 164 1 238 370 0 0 chr9 1696196 1696286 -116166341 - L2 LINE L2 -724 2590 2501 2208 176 57 20 chr9 1696941 1697379 -116165248 + MLT1C LTR MaLR 11 464 -3 204 295 143 27 chr9 1697583 1697695 -116164932 + L2 LINE L2 3146 3270 -2 1573 202 76 9 chr9 1698386 1698728 -116163899 - MLT1A1 LTR MaLR 0 365 1 278 282 68 10 chr9 1698728 1698831 -116163796 + MER94 DNA DNA 26 134 0 2376 65 0 10 chr9 1699046 1699340 -116163287 - AluY SINE Alu -20 291 1 491 318 77 14 chr9 1699562 1699782 -116162845 + MIR SINE MIR 29 262 0 2169 106 0 0 chr9 1700901 1701184 -116161443 + AluSg SINE Alu 6 288 -22 595 281 54 0 chr9 1702204 1702389 -116160238 - LTR16A LTR ERVL -235 215 21 397 257 67 0 chr9 1702388 1702493 -116160134 + MER94 DNA DNA 22 133 -1 * 232 312 52 0 chr9 1703228 1703305 -116159322 + L2 LINE L2 3231 3311 -2 1600 328 17 17 chr9 1704466 1705048 -116157579 - HERV16 LTR ERVL -2764 2232 1651 1051 235 101 35 chr9 1705083 1705449 -116157178 - LTR16A LTR ERVL -1 449 60 388 257 67 0 chr9 1705480 1705585 -116157042 + MER94 DNA DNA 22 133 -1 2001 139 3 19 chr9 1706379 1706695 -116155932 + AluJb SINE Alu 1 311 -1 281 191 96 53 chr9 1707265 1707359 -116155268 + L2 LINE L2 3211 3308 -5 470 252 22 0 chr9 1707865 1708000 -116154627 - L1M4 LINE L1 -1127 5019 4882 34 0 0 0 chr9 1708247 1708281 -116154346 + AT_rich Low_complexity Low_complexity 1 34 0 315 277 62 45 chr9 1708473 1708569 -116154058 + L1ME3 LINE L1 5747 5849 -313 2274 119 0 0 chr9 1708569 1708881 -116153746 - AluSx SINE Alu 0 312 1 315 277 62 45 chr9 1708881 1708961 -116153666 + L1ME3 LINE L1 5849 5926 -236 646 247 88 36 chr9 1709156 1709350 -116153277 - MLT1H LTR MaLR 0 549 364 646 233 124 71 chr9 1709371 1709637 -116152990 - MLT1H LTR MaLR -258 291 12 25 51 0 0 chr9 1709756 1709795 -116152832 + AT_rich Low_complexity Low_complexity 1 39 0 393 346 92 19 chr9 1713299 1713362 -116149265 - L3 LINE CR1 -31 1546 1489 2192 138 39 30 chr9 1713362 1713723 -116148904 + THE1B LTR MaLR 1 364 0 393 346 92 19 chr9 1713723 1713919 -116148708 - L3 LINE CR1 -88 1489 1268 354 228 184 56 chr9 1713946 1714266 -116148361 - L1ME4a LINE L1 -31 6090 5730 219 306 40 65 chr9 1714287 1714411 -116148216 - L2 LINE L2 0 3313 3193 279 278 38 45 chr9 1714569 1714702 -116147925 - L1ME4a LINE L1 -590 5531 5400 811 241 82 5 chr9 1715660 1715880 -116146747 - MIR SINE MIR 0 262 26 325 300 100 9 chr9 1715948 1716058 -116146569 - MIR3 SINE MIR -54 154 35 29 28 0 0 chr9 1716210 1716246 -116146381 + AT_rich Low_complexity Low_complexity 1 36 0 44120 44 6 3 chr9 1716983 1723112 -116139515 + L1PA3 LINE L1 8 6153 -2 222 118 0 0 chr9 1723205 1723239 -116139388 + (TC)n Simple_repeat Simple_repeat 2 35 0 902 358 47 12 chr9 1723580 1724152 -116138475 - L2 LINE L2 -1102 2212 1621 684 24 0 0 chr9 1724191 1724273 -116138354 + (TC)n Simple_repeat Simple_repeat 1 82 0 7738 52 9 6 chr9 1724739 1730250 -116132377 + L1PA4 LINE L1 628 6155 0 2786 16 0 0 chr9 1730253 1730558 -116132069 + AluYa5 SINE Alu 1 305 -6 29 0 0 0 chr9 1730728 1730757 -116131870 + AT_rich Low_complexity Low_complexity 1 29 0 3105 303 66 47 chr9 1731221 1732873 -116129754 + ERVL LTR ERVL 1012 2695 -3069 453 258 0 0 chr9 1732897 1732990 -116129637 + MER5A DNA MER1_type 9 101 -88 892 290 128 28 chr9 1733021 1733423 -116129204 + ERVL LTR ERVL 2675 3104 -2381 1253 127 0 0 chr9 1733540 1733713 -116128914 + AluJb SINE Alu 140 312 0 281 191 96 53 chr9 1734283 1734377 -116128250 + L2 LINE L2 3211 3308 -5 470 252 22 0 chr9 1734883 1735018 -116127609 - L1M4 LINE L1 -1127 5019 4882 34 0 0 0 chr9 1735265 1735299 -116127328 + AT_rich Low_complexity Low_complexity 1 34 0 294 212 63 0 chr9 1735491 1735562 -116127065 + L1ME LINE L1 5747 5813 -349 2818 19 0 0 chr9 1735587 1735898 -116126729 - AluYa5 SINE Alu 0 311 1 35584 41 3 2 chr9 1735901 1740971 -116121656 - L1PA4 LINE L1 0 6155 1081 622 178 0 0 chr9 1740939 1741040 -116121587 - L1P3 LINE L1 -6351 110 10 * 44 70 0 0 chr9 1741186 1741272 -116121355 + AT_rich Low_complexity Low_complexity 1 86 0 21 0 0 0 chr9 1742022 1742043 -116120584 + AT_rich Low_complexity Low_complexity 1 21 0 2642 287 119 14 chr9 1742298 1743543 -116119084 + L2 LINE L2 1378 2752 -562 232 273 130 63 chr9 1743543 1743781 -116118846 - LTR16A1 LTR ERVL -12 445 192 701 261 187 28 chr9 1743806 1744170 -116118457 + L2 LINE L2 2892 3313 0 1510 184 46 158 chr9 1745407 1745933 -116116694 - MLT1C LTR MaLR 0 467 1 512 321 29 24 chr9 1746650 1746896 -116115731 + MIR SINE MIR 2 248 -14 261 216 0 0 chr9 1747955 1748006 -116114621 - MADE1 DNA Mariner 0 80 30 2575 146 56 15 chr9 1748087 1748498 -116114129 + MSTA LTR MaLR 1 428 0 300 241 128 73 chr9 1748945 1749218 -116113409 + LTR16C LTR ERVL 163 483 -8 223 283 64 121 chr9 1749334 1749754 -116112873 + L2 LINE L2 2869 3264 -8 2089 110 40 3 chr9 1751067 1751366 -116111261 - AluSx SINE Alu -2 310 1 2459 161 32 19 chr9 1751382 1751853 -116110774 - L1MB7 LINE L1 -9 6175 5699 266 254 0 0 chr9 1754632 1754691 -116107936 + MIR SINE MIR 93 151 -111 313 282 10 58 chr9 1755616 1755719 -116106908 + MIR3 SINE MIR 90 187 -21 322 253 69 11 chr9 1756464 1756551 -116106076 - MIR SINE MIR -142 120 29 1139 226 11 90 chr9 1757621 1757998 -116104629 + MLT2B1 LTR ERVL 1 347 -173 1973 209 45 5 chr9 1758007 1758533 -116104094 + LTR69 LTR ERVL 1 588 0 659 176 0 135 chr9 1758533 1758726 -116103901 + MLT2B1 LTR ERVL 352 518 -2 579 245 108 44 chr9 1758863 1759067 -116103560 - MLT1C LTR MaLR 0 467 251 3700 198 32 26 chr9 1759072 1759874 -116102753 + L1MC3 LINE L1 5863 6669 -1116 743 198 32 0 chr9 1760031 1760157 -116102470 + FLAM_A SINE Alu 1 130 -3 536 165 157 58 chr9 1760582 1760703 -116101924 + FLAM_C SINE Alu 1 133 0 517 186 230 0 chr9 1761146 1761259 -116101368 - FLAM_C SINE Alu -2 141 3 24 53 0 0 chr9 1761904 1761942 -116100685 + AT_rich Low_complexity Low_complexity 1 38 0 851 192 47 5 chr9 1762248 1762441 -116100186 - L1MC4 LINE L1 -680 7362 7162 5365 133 23 52 chr9 1762562 1762713 -116099914 + L1MA9 LINE L1 5327 5481 -831 2169 115 7 0 chr9 1762713 1763018 -116099609 + AluSx SINE Alu 1 307 -5 5365 133 23 52 chr9 1763018 1763882 -116098745 + L1MA9 LINE L1 5481 6312 0 258 32 0 0 chr9 1764869 1764900 -116097727 + (TAAAA)n Simple_repeat Simple_repeat 1 31 0 611 219 15 7 chr9 1765651 1765788 -116096839 - MSTD LTR MaLR -258 138 1 397 332 57 17 chr9 1766397 1766698 -116095929 + HAL1 LINE L1 110 422 -2085 403 302 132 16 chr9 1767335 1767524 -116095103 - MIR SINE MIR -39 223 13 243 0 0 0 chr9 1767608 1767635 -116094992 + (TAA)n Simple_repeat Simple_repeat 2 28 0 2076 112 0 10 chr9 1768922 1769236 -116093391 + AluY SINE Alu 1 311 0 7722 41 7 1 chr9 1770360 1771462 -116091165 + L1PA4 LINE L1 5037 6144 -11 222 118 0 0 chr9 1771566 1771600 -116091027 + (TC)n Simple_repeat Simple_repeat 2 35 0 871 356 47 14 chr9 1771942 1772515 -116090112 - L2 LINE L2 -1102 2212 1621 399 21 0 0 chr9 1772554 1772602 -116090025 + (TC)n Simple_repeat Simple_repeat 1 48 0 2007 206 104 50 chr9 1772890 1773464 -116089163 - MLT1E3 LTR MaLR 0 624 20 201 94 0 0 chr9 1773579 1773611 -116089016 + (TTGG)n Simple_repeat Simple_repeat 4 35 0 2317 98 0 0 chr9 1773615 1773911 -116088716 - AluY SINE Alu -15 296 1 854 78 0 0 chr9 1774150 1774252 -116088375 + L1PA8 LINE L1 6057 6158 -14 916 266 72 26 chr9 1774293 1774598 -116088029 + L1M4b LINE L1 1062 1380 -5479 502 264 119 6 chr9 1774896 1775249 -116087378 + MLT1H LTR MaLR 138 549 0 302 291 30 79 chr9 1776049 1776214 -116086413 + MIR SINE MIR 12 168 -94 417 259 118 30 chr9 1776313 1776448 -116086179 + MIR SINE MIR 14 160 -102 2090 56 0 0 chr9 1776457 1776708 -116085919 - L1PA2 LINE L1 -403 5752 5502 3836 21 0 0 chr9 1776708 1777126 -116085501 + L1PA2 LINE L1 5737 6155 0 2174 186 74 9 chr9 1777494 1777929 -116084698 - L1MB2 LINE L1 -23 6148 5686 359 292 62 9 chr9 1778566 1778679 -116083948 + L2 LINE L2 3179 3297 -16 1583 176 61 3 chr9 1779426 1779721 -116082906 + AluJb SINE Alu 1 312 0 3483 70 2 0 chr9 1779871 1780326 -116082301 - L1PA7 LINE L1 -785 5361 4903 6171 62 6 0 chr9 1780326 1781112 -116081515 + L1PA7 LINE L1 5363 6154 0 229 282 14 84 chr9 1781122 1781193 -116081434 - MIR SINE MIR -109 99 34 184 0 97 0 chr9 1783066 1783097 -116079530 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 2154 221 46 15 chr9 1783448 1783974 -116078653 - MLT1F LTR MaLR 0 542 1 202 234 9 140 chr9 1784850 1784957 -116077670 - MER5B DNA MER1_type 0 178 86 265 275 63 21 chr9 1786023 1786165 -116076462 - ERVL LTR ERVL -8 5756 5609 27 49 0 0 chr9 1786323 1786364 -116076263 + AT_rich Low_complexity Low_complexity 1 41 0 1642 209 8 48 chr9 1786499 1786877 -116075750 - MLT1A1 LTR MaLR 0 365 3 7132 205 23 64 chr9 1786890 1788236 -116074391 - MLT1A1-int LTR MaLR -6 1729 425 356 43 0 0 chr9 1788236 1788283 -116074344 + MADE1 DNA Mariner 30 76 -4 7132 205 23 64 chr9 1788283 1788692 -116073935 - MLT1A1-int LTR MaLR -1310 425 1 1475 248 19 14 chr9 1788692 1789055 -116073572 - MLT1A1 LTR MaLR 0 365 1 4864 306 71 69 chr9 1789071 1791504 -116071123 - ERVL LTR ERVL -546 5218 2677 457 258 0 0 chr9 1791504 1791597 -116071030 - MER5A DNA MER1_type -88 101 9 4864 306 71 69 chr9 1791597 1793466 -116069161 - ERVL LTR ERVL -3087 2677 814 29 0 0 0 chr9 1793737 1793766 -116068861 + AT_rich Low_complexity Low_complexity 1 29 0 2749 16 0 0 chr9 1793936 1794241 -116068386 - AluYa5 SINE Alu -6 305 1 33215 41 3 2 chr9 1794244 1799314 -116063313 - L1PA4 LINE L1 0 6155 1081 578 178 0 0 chr9 1799282 1799383 -116063244 - L1P3 LINE L1 -6351 110 10 * 44 70 0 0 chr9 1799529 1799615 -116063012 + AT_rich Low_complexity Low_complexity 1 86 0 21 0 0 0 chr9 1800365 1800386 -116062241 + AT_rich Low_complexity Low_complexity 1 21 0 2661 286 120 15 chr9 1800641 1801886 -116060741 + L2 LINE L2 1378 2752 -562 698 270 177 32 chr9 1802106 1802513 -116060114 + L2 LINE L2 2848 3313 0 1307 184 46 158 chr9 1803750 1804276 -116058351 - MLT1C LTR MaLR 0 467 1 518 321 29 24 chr9 1804993 1805239 -116057388 + MIR SINE MIR 2 248 -14 236 178 0 0 chr9 1806304 1806349 -116056278 - MADE1 DNA Mariner -6 74 30 2385 146 56 15 chr9 1806430 1806841 -116055786 + MSTA LTR MaLR 1 428 0 231 236 131 75 chr9 1807288 1807554 -116055073 + LTR16C LTR ERVL 163 476 -15 230 309 52 109 chr9 1807677 1808097 -116054530 + L2 LINE L2 2869 3264 -8 2086 110 40 3 chr9 1809410 1809709 -116052918 - AluSx SINE Alu -2 310 1 2235 161 32 19 chr9 1809725 1810196 -116052431 - L1MB7 LINE L1 -9 6175 5699 270 254 0 0 chr9 1812975 1813034 -116049593 + MIR SINE MIR 93 151 -111 309 282 10 58 chr9 1813959 1814062 -116048565 + MIR3 SINE MIR 90 187 -21 321 253 69 11 chr9 1814807 1814894 -116047733 - MIR SINE MIR -142 120 29 1009 225 11 91 chr9 1815964 1816338 -116046289 + MLT2B1 LTR ERVL 1 344 -176 1811 209 45 5 chr9 1816350 1816876 -116045751 + LTR69 LTR ERVL 1 588 0 584 176 0 135 chr9 1816876 1817069 -116045558 + MLT2B1 LTR ERVL 352 518 -2 500 250 108 44 chr9 1817206 1817410 -116045217 - MLT1C LTR MaLR 0 467 251 5996 176 94 75 chr9 1817415 1818639 -116043988 + L1MC3 LINE L1 5863 7219 -566 230 264 33 33 chr9 1818639 1818730 -116043897 + MLT1F1 LTR MaLR 35 125 -442 5996 176 94 75 chr9 1818730 1819111 -116043516 + L1MC3 LINE L1 7219 7591 -194 862 174 60 0 chr9 1819114 1819298 -116043329 + L1MC2 LINE L1 6137 6331 -13 604 248 8 0 chr9 1820092 1820217 -116042410 + FLAM_A SINE Alu 1 126 -16 24 0 0 0 chr9 1820235 1820259 -116042368 + AT_rich Low_complexity Low_complexity 1 24 0 321 169 17 0 chr9 1820506 1820565 -116042062 - L1MB7 LINE L1 -445 5721 5662 669 70 85 4 chr9 1820565 1820837 -116041790 + (TA)n Simple_repeat Simple_repeat 1 293 0 206 108 92 15 chr9 1820838 1820903 -116041724 + (TTATA)n Simple_repeat Simple_repeat 2 71 0 627 96 39 34 chr9 1820907 1821085 -116041542 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 188 35 35 0 chr9 1821105 1821134 -116041493 + (TTATA)n Simple_repeat Simple_repeat 5 34 0 186 98 59 0 chr9 1821243 1821294 -116041333 + (TA)n Simple_repeat Simple_repeat 1 54 0 63 14 0 0 chr9 1821294 1821364 -116041263 + AT_rich Low_complexity Low_complexity 1 70 0 538 96 45 39 chr9 1821364 1821542 -116041085 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 352 184 42 24 chr9 1821542 1821710 -116040917 + (TTATA)n Simple_repeat Simple_repeat 2 172 0 5599 244 51 20 chr9 1821710 1821758 -116040869 - L1P3 LINE L1 -470 5702 5657 7290 36 0 0 chr9 1821758 1822719 -116039908 - L1PA5 LINE L1 -15 6139 5172 5599 244 51 20 chr9 1822719 1825017 -116037610 - L1P3 LINE L1 -515 5657 3269 2041 146 0 0 chr9 1825217 1825504 -116037123 + AluSx SINE Alu 1 287 -25 494 154 22 7 chr9 1825504 1825640 -116036987 + (TA)n Simple_repeat Simple_repeat 1 138 0 2739 3 0 3 chr9 1825696 1825998 -116036629 + AluYa5 SINE Alu 1 301 -10 2229 246 14 26 chr9 1826474 1827043 -116035584 - MLT1F1 LTR MaLR -2 565 4 1327 176 12 8 chr9 1827120 1827376 -116035251 - L1 LINE L1 -2316 3830 3574 1818 143 0 3 chr9 1827376 1827663 -116034964 + L1PA15 LINE L1 5876 6161 -4 647 317 45 8 chr9 1828223 1828466 -116034161 + MIR SINE MIR 8 259 -3 35 16 0 49 chr9 1829065 1829126 -116033501 + AT_rich Low_complexity Low_complexity 1 58 0 199 430 52 10 chr9 1829301 1829494 -116033133 - L2 LINE L2 -215 3057 2857 312 343 60 69 chr9 1830624 1830974 -116031653 + HAL1 LINE L1 1 347 -2160 703 267 133 39 chr9 1831260 1831747 -116030880 + HAL1 LINE L1 812 1344 -1163 2335 88 0 35 chr9 1833476 1833795 -116028832 - AluSg SINE Alu -2 308 1 216 298 0 0 chr9 1834602 1834659 -116027968 + GA-rich Low_complexity Low_complexity 1 57 0 2123 157 15 3 chr9 1835142 1835480 -116027147 - MER2 DNA MER2_type 0 344 3 313 268 0 57 chr9 1835626 1835749 -116026878 - L3 LINE CR1 -300 1277 1162 492 246 56 56 chr9 1835766 1835908 -116026719 - MER5A DNA MER1_type -21 168 27 485 285 163 36 chr9 1836083 1836444 -116026183 - L3 LINE CR1 -576 1001 595 385 95 0 119 chr9 1836463 1836547 -116026080 - MLT1D LTR MaLR -2 503 430 8551 97 7 8 chr9 1836553 1838502 -116024125 - L1PA7 LINE L1 0 6154 4188 7640 92 12 4 chr9 1838502 1839585 -116023042 - L1PA7 LINE L1 -3413 2733 1642 1424 207 153 26 chr9 1839589 1839976 -116022651 - MLT1D LTR MaLR -69 436 1 302 343 50 34 chr9 1840026 1840217 -116022410 - MIR SINE MIR -50 212 20 486 315 144 5 chr9 1840217 1840439 -116022188 - L3 LINE CR1 -1029 548 296 266 294 102 37 chr9 1841144 1841331 -116021296 + L2 LINE L2 2069 2267 -1047 982 174 35 6 chr9 1841643 1841815 -116020812 - MER5B DNA MER1_type 0 178 2 565 317 66 21 chr9 1842226 1842469 -116020158 + MIR SINE MIR 6 259 -3 184 294 29 29 chr9 1842563 1842631 -116019996 + L2 LINE L2 3244 3311 -2 219 139 0 0 chr9 1843376 1843402 -116019225 + (CA)n Simple_repeat Simple_repeat 2 30 -14 1514 180 115 49 chr9 1843402 1843768 -116018859 + MLT1B LTR MaLR 1 390 0 219 139 0 0 chr9 1843768 1843784 -116018843 + (CA)n Simple_repeat Simple_repeat 29 44 0 2164 111 7 0 chr9 1844001 1844289 -116018338 + AluSx SINE Alu 1 290 -22 28 29 0 0 chr9 1844289 1844324 -116018303 + AT_rich Low_complexity Low_complexity 1 35 0 480 302 135 14 chr9 1844607 1844829 -116017798 - MIR SINE MIR -3 259 11 5011 158 66 33 chr9 1845224 1845379 -116017248 + L1MC3 LINE L1 6709 6857 -928 225 0 0 0 chr9 1845379 1845404 -116017223 + (CA)n Simple_repeat Simple_repeat 2 26 0 5011 158 66 33 chr9 1845404 1846290 -116016337 + L1MC3 LINE L1 6857 7785 0 872 296 51 12 chr9 1846795 1847219 -116015408 - LTR16B LTR ERVL 0 464 1 293 109 0 0 chr9 1847887 1847933 -116014694 + MADE1 DNA Mariner 1 46 -34 268 179 0 71 chr9 1850326 1850382 -116012245 + L3 LINE CR1 1524 1575 -2 2156 117 0 0 chr9 1850591 1850874 -116011753 + AluSx SINE Alu 1 283 -29 1031 294 40 62 chr9 1851013 1851435 -116011192 - MER115 DNA AcHobo -271 422 10 268 380 23 8 chr9 1852012 1852141 -116010486 - MIR SINE MIR -62 146 16 253 253 11 46 chr9 1852218 1852305 -116010322 + L2 LINE L2 3229 3312 -1 256 247 101 0 chr9 1852993 1853082 -116009545 - MER113 DNA MER1_type? -420 101 4 395 277 107 0 chr9 1853086 1853198 -116009429 - MIR3 SINE MIR -49 159 36 267 306 0 0 chr9 1853463 1853555 -116009072 - MIR SINE MIR -62 146 66 321 251 156 52 chr9 1854299 1854354 -116008273 - MIR SINE MIR -18 244 196 1774 171 72 93 chr9 1854354 1854829 -116007798 - MLT1C LTR MaLR 0 467 3 321 251 156 52 chr9 1854829 1854984 -116007643 - MIR SINE MIR -66 196 12 798 253 30 47 chr9 1855110 1855205 -116007422 - MIR SINE MIR -8 254 159 1929 113 49 7 chr9 1855205 1855489 -116007138 - AluSx SINE Alu -16 296 1 798 253 30 47 chr9 1855489 1855626 -116007001 - MIR SINE MIR -103 159 26 576 232 99 72 chr9 1856921 1857130 -116005497 - MER102b DNA MER1_type -1093 335 116 468 0 0 0 chr9 1857130 1857182 -116005445 + (TG)n Simple_repeat Simple_repeat 2 53 0 576 232 99 72 chr9 1857182 1857235 -116005392 - MER102b DNA MER1_type -1312 116 66 356 198 214 57 chr9 1857249 1857441 -116005186 - MLT1H LTR MaLR -7 548 327 427 164 0 0 chr9 1857815 1857888 -116004739 + AluS SINE Alu 2 74 -238 550 275 38 30 chr9 1857906 1858182 -116004445 - MLT1H LTR MaLR -292 257 10 794 269 34 8 chr9 1858251 1858485 -116004142 + MIR SINE MIR 7 246 -16 1834 151 12 107 chr9 1858497 1858928 -116003699 - MLT1B LTR MaLR 0 390 1 315 280 27 13 chr9 1859014 1859164 -116003463 + (TA)n Simple_repeat Simple_repeat 2 153 0 1811 203 29 29 chr9 1859985 1860359 -116002268 + MLT1A2 LTR MaLR 1 374 0 668 280 114 4 chr9 1860684 1860920 -116001707 + MIR SINE MIR 1 262 0 353 316 186 0 chr9 1862659 1862874 -115999753 + MLT1L LTR MaLR 90 344 -271 2260 122 21 24 chr9 1863232 1863568 -115999059 - MER1B DNA MER1_type 0 337 3 4186 69 19 4 chr9 1863856 1864379 -115998248 + L1PA7 LINE L1 5624 6154 0 507 191 9 45 chr9 1864662 1864772 -115997855 + MER97b DNA MER1_type? 74 179 -874 2245 110 0 7 chr9 1865201 1865502 -115997125 + AluSx SINE Alu 1 299 -13 643 286 44 15 chr9 1865504 1865707 -115996920 + MLT1L LTR MaLR 394 602 -13 202 235 12 141 chr9 1866152 1866237 -115996390 - L2 LINE L2 -3 3269 3196 23 0 0 0 chr9 1867017 1867040 -115995587 + AT_rich Low_complexity Low_complexity 1 23 0 614 147 7 73 chr9 1867109 1867245 -115995382 - L1MB1 LINE L1 -26 6163 6037 276 289 133 16 chr9 1867522 1867650 -115994977 - L3 LINE CR1 -1 1576 1434 2535 175 17 7 chr9 1867739 1868161 -115994466 + MSTB LTR MaLR 1 426 0 2306 83 0 51 chr9 1868176 1868488 -115994139 + AluSc SINE Alu 1 296 -13 8357 189 41 22 chr9 1868489 1870105 -115992522 + MSTB-int LTR MaLR 6 1651 0 2228 188 57 5 chr9 1870105 1870510 -115992117 + MSTB LTR MaLR 1 426 0 798 69 0 0 chr9 1870545 1870647 -115991980 - L1PB1 LINE L1 0 6151 6050 257 274 0 14 chr9 1870653 1870726 -115991901 - L3 LINE CR1 -292 1285 1214 293 269 146 23 chr9 1871343 1871473 -115991154 - L3 LINE CR1 -426 1151 1006 900 316 39 31 chr9 1872255 1872670 -115989957 - LTR16C LTR ERVL -1 490 73 724 284 91 12 chr9 1873158 1873401 -115989226 + MIR SINE MIR 1 262 0 6351 216 52 28 chr9 1873851 1875091 -115987536 + L1MA5 LINE L1 13 1222 -5986 2091 58 0 0 chr9 1875091 1875334 -115987293 - L1PA5 LINE L1 0 6154 5912 6351 216 52 28 chr9 1875334 1875479 -115987148 + L1MA5 LINE L1 1222 1362 -5846 276 30 0 0 chr9 1875479 1875512 -115987115 + (CA)n Simple_repeat Simple_repeat 2 34 0 6351 216 52 28 chr9 1875512 1875879 -115986748 + L1MA5 LINE L1 1362 1719 -5489 2240 120 0 3 chr9 1875879 1876188 -115986439 + AluSx SINE Alu 1 308 -4 6351 216 52 28 chr9 1876188 1877319 -115985308 + L1MA5 LINE L1 1719 3845 -3363 * 25807 74 12 2 chr9 1877311 1881552 -115981075 + L1PA6 LINE L1 1872 6154 0 338 308 77 19 chr9 1881580 1881736 -115980891 + L1ME4a LINE L1 5956 6120 -1 2418 190 57 17 chr9 1881801 1882275 -115980352 + MER68 LTR ERV1 1 493 -69 6320 179 50 24 chr9 1882275 1885637 -115976990 + L1MA5 LINE L1 3822 7345 -17 1973 143 0 22 chr9 1885676 1885990 -115976637 + AluSx SINE Alu 1 307 -5 215 289 19 39 chr9 1886965 1887069 -115975558 + MIR3 SINE MIR 99 200 -8 240 255 170 21 chr9 1887169 1887263 -115975364 - L2 LINE L2 -5 3267 3160 1105 192 151 49 chr9 1889427 1889671 -115972956 + L1ME1 LINE L1 5753 6049 -117 469 261 18 0 chr9 1889671 1889782 -115972845 - MER81 DNA DNA 0 114 2 1105 192 151 49 chr9 1889782 1889907 -115972720 + L1ME1 LINE L1 6049 6160 -6 248 280 32 21 chr9 1889938 1890031 -115972596 + L2 LINE L2 3139 3232 -40 231 268 85 78 chr9 1890231 1890384 -115972243 - MER5A DNA MER1_type 0 189 36 * 285 379 7 7 chr9 1890250 1890395 -115972232 + MER5B DNA MER1_type 21 165 -13 278 193 72 60 chr9 1890770 1890853 -115971774 + MIR3 SINE MIR 118 201 -7 2054 129 0 10 chr9 1891248 1891551 -115971076 + AluSx SINE Alu 1 300 -12 1966 149 10 72 chr9 1891734 1892150 -115970477 - MLT1B LTR MaLR 0 390 1 234 258 161 32 chr9 1893301 1893425 -115969202 + MIR SINE MIR 122 261 -1 473 279 55 22 chr9 1893861 1894044 -115968583 - MIR SINE MIR -49 213 25 2293 107 0 3 chr9 1894672 1894972 -115967655 - AluSp SINE Alu -14 299 1 566 124 0 11 chr9 1894972 1895061 -115967566 - AluSc SINE Alu -5 304 217 286 391 50 11 chr9 1896318 1896497 -115966130 + L2 LINE L2 3085 3270 -2 646 309 34 27 chr9 1896634 1896896 -115965731 - LTR16A LTR ERVL -170 280 17 2189 272 79 49 chr9 1897062 1898155 -115964472 - L2 LINE L2 -4 3309 2175 207 204 0 37 chr9 1898392 1898446 -115964181 - L2 LINE L2 -1143 2171 2120 353 258 105 37 chr9 1898686 1899010 -115963617 + MLT1I LTR MaLR 53 542 0 296 395 7 7 chr9 1899033 1899180 -115963447 + MIR SINE MIR 111 257 -5 2052 171 25 3 chr9 1901169 1901526 -115961101 + MLT1A1 LTR MaLR 1 365 0 21 57 0 0 chr9 1901955 1901990 -115960637 + AT_rich Low_complexity Low_complexity 1 35 0 228 189 57 19 chr9 1902048 1902154 -115960473 + (TA)n Simple_repeat Simple_repeat 1 110 0 203 188 0 0 chr9 1902244 1902276 -115960351 - L2 LINE L2 -71 3242 3211 237 245 167 34 chr9 1902295 1902499 -115960128 - MARNA DNA Mariner -149 437 207 312 293 40 0 chr9 1903037 1903112 -115959515 - MIR SINE MIR -61 147 70 242 160 0 40 chr9 1903564 1903614 -115959013 - L2 LINE L2 -8 3305 3258 319 325 26 0 chr9 1903621 1903735 -115958892 - L1ME4a LINE L1 -254 5867 5751 195 389 11 0 chr9 1903950 1904040 -115958587 - L2 LINE L2 -2 3270 3180 2222 192 56 29 chr9 1904211 1904733 -115957894 - MLT1F LTR MaLR 0 542 7 236 274 116 0 chr9 1905653 1905748 -115956879 + MLT1K LTR MaLR 373 478 -110 1682 156 158 24 chr9 1905957 1906367 -115956260 + MLT1C LTR MaLR 3 467 0 195 69 0 0 chr9 1906490 1906519 -115956108 + (CA)n Simple_repeat Simple_repeat 2 30 0 274 245 39 0 chr9 1906589 1906691 -115955936 - L1ME3A LINE L1 -271 5899 5794 442 276 133 56 chr9 1907395 1907786 -115954841 + MLT1L LTR MaLR 195 615 0 194 304 0 0 chr9 1907916 1907962 -115954665 - MIR SINE MIR -69 139 94 180 111 0 0 chr9 1908354 1908381 -115954246 + (T)n Simple_repeat Simple_repeat 1 27 0 2144 128 0 19 chr9 1911448 1911761 -115950866 - AluSg SINE Alu -3 307 1 242 257 86 0 chr9 1912812 1912882 -115949745 - MIR3 SINE MIR -15 193 118 269 286 22 22 chr9 1913072 1913163 -115949464 - HAL1 LINE L1 -172 2335 2245 21 57 0 0 chr9 1913396 1913431 -115949196 + AT_rich Low_complexity Low_complexity 1 35 0 387 269 42 12 chr9 1913914 1914081 -115948546 - LTR33A LTR ERVL -2 521 350 474 235 55 67 chr9 1914503 1914758 -115947869 - HAL1 LINE L1 -803 1704 1453 195 114 0 0 chr9 1914760 1914795 -115947832 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 527 272 38 54 chr9 1914810 1915049 -115947578 + L2 LINE L2 2521 2755 -559 310 249 18 0 chr9 1915049 1915136 -115947491 - MLT1J2 LTR MaLR 0 550 461 184 299 221 31 chr9 1915573 1915700 -115946927 - L2 LINE L2 -1 3271 3121 231 281 65 69 chr9 1915719 1915950 -115946677 + HAL1b LINE L1 219 448 -900 7657 218 20 17 chr9 1916224 1916632 -115945995 + L1 LINE L1 2633 3038 -3108 2364 86 3 0 chr9 1916632 1916934 -115945693 + AluY SINE Alu 1 303 -8 7657 218 20 17 chr9 1916934 1918579 -115944048 + L1 LINE L1 3038 4693 -1453 4847 149 50 3 chr9 1918579 1919578 -115943049 + L1PA16 LINE L1 5116 6157 -9 21 36 0 0 chr9 1919578 1919606 -115943021 + AT_rich Low_complexity Low_complexity 1 28 0 1842 173 17 11 chr9 1919755 1920107 -115942520 + THE1A LTR MaLR 2 355 0 11404 101 14 0 chr9 1920107 1921665 -115940962 + THE1A-int LTR MaLR 1 1580 0 2038 153 14 11 chr9 1921665 1922019 -115940608 + THE1A LTR MaLR 1 355 0 2079 133 0 0 chr9 1922056 1922364 -115940263 - AluSc SINE Alu 0 308 1 195 114 0 0 chr9 1922509 1922544 -115940083 + (TTCA)n Simple_repeat Simple_repeat 4 38 0 268 315 14 0 chr9 1922550 1922623 -115940004 - L2 LINE L2 -4 3309 3236 301 26 0 0 chr9 1922768 1922807 -115939820 + U5 snRNA snRNA 6 44 -72 813 261 86 34 chr9 1923106 1923489 -115939138 - MLT1J2 LTR MaLR -44 406 4 1932 143 71 13 chr9 1924632 1925011 -115937616 - L1MB3 LINE L1 -8 6175 5775 1569 56 0 0 chr9 1925097 1925292 -115937335 + L1PA11 LINE L1 5980 6174 0 533 297 78 47 chr9 1925337 1925745 -115936882 - LTR16C LTR ERVL -10 481 61 762 291 80 40 chr9 1925862 1926237 -115936390 - MLT1J2 LTR MaLR -57 393 4 410 251 64 35 chr9 1926797 1926869 -115935758 + L1ME LINE L1 5579 5647 -474 789 284 219 7 chr9 1926869 1927299 -115935328 + LTR33 LTR ERVL 1 521 0 410 251 64 35 chr9 1927299 1927397 -115935230 + L1ME LINE L1 5647 5754 -367 183 129 0 0 chr9 1927695 1927726 -115934901 + (A)n Simple_repeat Simple_repeat 1 31 0 250 281 231 0 chr9 1927869 1927990 -115934637 - MIR SINE MIR -8 254 106 678 283 197 49 chr9 1928218 1928784 -115933843 - L2 LINE L2 -4 3309 2669 189 0 0 0 chr9 1928871 1928892 -115933735 + (A)n Simple_repeat Simple_repeat 1 21 0 1202 224 131 57 chr9 1928919 1929424 -115933203 - MLT1F LTR MaLR 0 542 1 323 296 25 96 chr9 1980553 1980752 -115881875 + MIR SINE MIR 1 185 -77 523 202 9 9 chr9 1980913 1981022 -115881605 + L2 LINE L2 3205 3313 0 2431 68 0 3 chr9 1983123 1983415 -115879212 - AluY SINE Alu -20 291 1 220 158 35 35 chr9 1984238 1984295 -115878332 + A-rich Low_complexity Low_complexity 2 58 0 875 315 99 19 chr9 1985508 1985930 -115876697 - L2 LINE L2 0 3313 2858 241 338 151 0 chr9 1987385 1987524 -115875103 + MER91A DNA MER1_type 3 162 -34 701 307 48 35 chr9 1989468 1989865 -115872762 - L1MC5 LINE L1 -531 7430 7029 2258 91 35 0 chr9 1990080 1990366 -115872261 - AluSq SINE Alu -17 296 1 315 181 145 12 chr9 1990529 1990612 -115872015 - L1MC4 LINE L1 -136 7906 7813 498 327 77 4 chr9 1993309 1993551 -115869076 + MIR SINE MIR 3 261 -1 2182 128 3 3 chr9 1993686 1993992 -115868635 - AluSx SINE Alu -6 306 1 670 261 44 32 chr9 1994946 1995195 -115867432 + MIR SINE MIR 6 257 -5 204 329 92 40 chr9 1995202 1995354 -115867273 - L2 LINE L2 -8 3264 3105 2858 13 0 3 chr9 1995662 1995974 -115866653 - AluYa5 SINE Alu 0 311 1 264 281 135 52 chr9 1995986 1996237 -115866390 - L2 LINE L2 -248 3024 2753 248 137 0 20 chr9 1996753 1996804 -115865823 + LTR33A LTR ERVL 4 53 -470 22 0 0 0 chr9 1996824 1996846 -115865781 + AT_rich Low_complexity Low_complexity 1 22 0 559 301 56 10 chr9 1996847 1997043 -115865584 - MIR SINE MIR -56 206 2 270 344 11 11 chr9 1997524 1997617 -115865010 + MIR3 SINE MIR 67 159 -49 213 39 0 0 chr9 1997780 1997806 -115864821 + (TG)n Simple_repeat Simple_repeat 1 26 0 403 326 7 14 chr9 1997817 1997955 -115864672 - MIR SINE MIR -98 164 28 209 188 0 75 chr9 1998612 1998692 -115863935 + (TATATG)n Simple_repeat Simple_repeat 5 78 0 1588 175 58 7 chr9 1998726 1999017 -115863610 - AluJo SINE Alu -1 311 6 2446 74 0 3 chr9 1999113 1999409 -115863218 - AluY SINE Alu -16 295 1 686 301 122 34 chr9 1999677 2000145 -115862482 - LTR33A LTR ERVL -9 514 6 3585 39 15 2 chr9 2000205 2000664 -115861963 + L1PA5 LINE L1 5686 6150 -4 1058 193 0 14 chr9 2004061 2004268 -115858359 - L1MB3 LINE L1 -344 5839 5636 2593 102 5 8 chr9 2005587 2005961 -115856666 - THE1C LTR MaLR 0 375 3 251 188 42 0 chr9 2007703 2007751 -115854876 + MIR SINE MIR 94 143 -119 869 237 54 0 chr9 2011365 2011551 -115851076 + Tigger7 DNA MER2_type 7 202 -503 413 267 10 0 chr9 2011998 2012099 -115850528 + MLT1E2 LTR MaLR 518 619 -7 2200 122 0 10 chr9 2012656 2012960 -115849667 + AluSx SINE Alu 2 302 -10 2335 103 3 3 chr9 2014780 2015091 -115847536 - AluY SINE Alu 0 311 1 2246 128 0 3 chr9 2015258 2015564 -115847063 - AluSx SINE Alu -7 305 1 387 312 46 34 chr9 2016224 2016432 -115846195 - MIR SINE MIR -19 243 37 197 160 0 40 chr9 2017186 2017236 -115845391 + GA-rich Low_complexity Low_complexity 3 50 0 1430 216 96 35 chr9 2019260 2019750 -115842877 - MLT2B1 LTR ERVL 0 520 1 261 338 42 0 chr9 2020228 2020370 -115842257 + MER5A DNA MER1_type 40 187 -2 306 73 0 0 chr9 2020384 2020425 -115842202 + (TCCA)n Simple_repeat Simple_repeat 3 43 0 340 327 7 4 chr9 2021196 2021485 -115841142 + (CA)n Simple_repeat Simple_repeat 1 290 0 238 216 98 49 chr9 2022269 2022371 -115840256 + LTR16C LTR ERVL 385 491 0 247 286 36 0 chr9 2022957 2023041 -115839586 - MIR SINE MIR -70 138 52 376 321 47 21 chr9 2024527 2024720 -115837907 - L1MEd LINE L1 -5920 199 2 239 312 128 0 chr9 2024838 2024963 -115837664 - L1M4 LINE L1 -1988 4158 4018 7596 17 0 0 chr9 2024969 2026304 -115836323 - L1PA3 LINE L1 0 6155 4821 6117 38 3 0 chr9 2026304 2027078 -115835549 + L1P LINE L1 3790 4565 -1581 220 320 70 55 chr9 2028460 2028588 -115834039 - L2 LINE L2 -1 3271 3142 1184 282 73 18 chr9 2029554 2030047 -115832580 - LTR33 LTR ERVL 0 521 2 391 252 137 33 chr9 2031120 2031349 -115831278 - MLT1G3 LTR MaLR -171 371 135 276 313 172 0 chr9 2032011 2032139 -115830488 + MIR SINE MIR 57 206 -56 583 203 0 34 chr9 2032201 2032319 -115830308 - MER58B DNA MER1_type -1 340 227 249 366 16 52 chr9 2033647 2033841 -115828786 + MIR SINE MIR 6 192 -70 930 247 113 53 chr9 2034120 2034342 -115828285 + MLT1L LTR MaLR 1 208 -303 850 252 61 0 chr9 2034342 2034588 -115828039 - MIR SINE MIR 0 262 2 930 247 113 53 chr9 2034588 2034921 -115827706 + MLT1L LTR MaLR 208 507 -4 204 313 38 12 chr9 2035014 2035094 -115827533 + L3 LINE CR1 1480 1561 -16 961 135 7 0 chr9 2035436 2035584 -115827043 + THE1B LTR MaLR 216 364 0 10081 98 37 40 chr9 2035584 2037169 -115825458 + THE1B-int LTR MaLR 1 1580 0 2616 110 0 0 chr9 2037169 2037533 -115825094 + THE1B LTR MaLR 1 364 0 303 378 58 29 chr9 2037543 2037784 -115824843 + L1 LINE L1 4531 4778 -1368 2550 66 0 3 chr9 2037971 2038272 -115824355 + AluY SINE Alu 2 301 -10 431 241 186 0 chr9 2038433 2038578 -115824049 + MER5A DNA MER1_type 10 181 -8 2316 235 51 46 chr9 2038815 2039569 -115823058 - L1M4 LINE L1 -1778 4368 3608 1366 171 98 29 chr9 2039569 2039844 -115822783 - AluJb SINE Alu -18 294 1 2316 235 51 46 chr9 2039844 2039855 -115822772 - L1M4 LINE L1 -2538 3608 3599 673 249 80 20 chr9 2039850 2040051 -115822576 - L1MD2 LINE L1 -16 6343 6131 * 255 197 237 0 chr9 2040293 2040369 -115822258 - L1MD2 LINE L1 -543 5699 5606 * 478 242 113 36 chr9 2040368 2040562 -115822065 - L1M4 LINE L1 -2523 3623 3415 504 336 195 23 chr9 2041180 2042014 -115820613 + L2 LINE L2 1167 2144 -1170 5256 88 11 49 chr9 2042071 2043103 -115819524 + L1MA3 LINE L1 4182 6287 -18 5256 102 13 45 chr9 2043103 2043832 -115818795 + L1MA3 LINE L1 5423 6119 -186 2618 64 0 10 chr9 2043832 2044146 -115818481 + AluY SINE Alu 1 311 0 5256 102 13 45 chr9 2044146 2044327 -115818300 + L1MA3 LINE L1 6119 6304 -1 5256 88 11 49 chr9 2044327 2044345 -115818282 + L1MA3 LINE L1 6287 6304 -1 25 0 0 0 chr9 2044367 2044392 -115818235 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr9 2044558 2044583 -115818044 + AT_rich Low_complexity Low_complexity 1 25 0 1020 160 0 0 chr9 2044583 2044727 -115817900 - AluSg/x SINE Alu -23 289 146 2507 79 0 3 chr9 2047309 2047613 -115815014 + AluY SINE Alu 1 303 -8 1135 146 0 6 chr9 2047613 2047784 -115814843 + AluSp SINE Alu 134 303 -10 276 165 21 62 chr9 2048235 2048332 -115814295 + (CAGAGA)n Simple_repeat Simple_repeat 6 98 0 2545 237 43 42 chr9 2048445 2049233 -115813394 - L1ME1 LINE L1 -4 6162 5374 678 260 128 78 chr9 2050637 2051236 -115811391 + Charlie7 DNA MER1_type 48 676 -1936 472 346 15 5 chr9 2051985 2052190 -115810437 + MIR SINE MIR 53 259 -3 375 122 22 33 chr9 2052297 2052387 -115810240 + L1MA9 LINE L1 6207 6295 -17 3760 142 15 3 chr9 2059149 2059761 -115802866 + LTR31 LTR ERV1 1 619 0 2092 103 33 0 chr9 2059941 2060245 -115802382 + AluSx SINE Alu 1 313 0 38 61 0 0 chr9 2060408 2060474 -115802153 + AT_rich Low_complexity Low_complexity 1 66 0 2383 88 0 0 chr9 2063875 2064172 -115798455 + AluSg SINE Alu 1 297 -13 23 54 0 0 chr9 2064188 2064225 -115798402 + AT_rich Low_complexity Low_complexity 1 37 0 1974 141 39 33 chr9 2064249 2064611 -115798016 - THE1B LTR MaLR 0 364 1 311 0 26 0 chr9 2065582 2065621 -115797006 + (TG)n Simple_repeat Simple_repeat 2 41 0 604 292 23 88 chr9 2066173 2066604 -115796023 + L2 LINE L2 2649 3054 -218 940 215 21 0 chr9 2066613 2066799 -115795828 - MER58A DNA MER1_type 0 224 35 295 241 38 13 chr9 2066928 2067007 -115795620 + L2 LINE L2 3225 3305 -8 237 65 0 0 chr9 2067082 2067113 -115795514 + (TG)n Simple_repeat Simple_repeat 1 31 0 227 79 26 0 chr9 2067113 2067151 -115795476 + (GA)n Simple_repeat Simple_repeat 2 40 0 1869 203 29 61 chr9 2067277 2067547 -115795080 + L1MA9 LINE L1 5832 6109 -203 2632 49 0 3 chr9 2067547 2067851 -115794776 + AluY SINE Alu 1 303 -8 1869 203 29 61 chr9 2067851 2068026 -115794601 + L1MA9 LINE L1 6109 6262 -50 1854 166 0 7 chr9 2068026 2068315 -115794312 - AluJo SINE Alu -25 287 1 1869 203 29 61 chr9 2068315 2068360 -115794267 + L1MA9 LINE L1 6262 6307 -5 21 36 0 0 chr9 2068369 2068397 -115794230 + AT_rich Low_complexity Low_complexity 1 28 0 456 312 133 48 chr9 2068506 2068881 -115793746 - MLT1K LTR MaLR -33 555 149 245 279 58 0 chr9 2072080 2072184 -115790443 + MIR SINE MIR 29 138 -124 185 189 0 0 chr9 2072185 2072222 -115790405 + L2 LINE L2 3213 3249 -23 236 241 69 103 chr9 2072881 2072936 -115789691 - MLT1C LTR MaLR -15 452 397 1961 66 0 0 chr9 2072936 2073192 -115789435 + L1PA5 LINE L1 5898 6153 -1 236 241 69 103 chr9 2073192 2073310 -115789317 - MLT1C LTR MaLR -70 397 285 231 235 69 39 chr9 2073357 2073459 -115789168 - MLT1C LTR MaLR -273 194 90 1068 222 28 131 chr9 2074394 2074853 -115787774 - MLT2D LTR ERVL 0 414 3 538 26 26 93 chr9 2074975 2075168 -115787459 + (TA)n Simple_repeat Simple_repeat 1 180 0 324 252 52 102 chr9 2075172 2075545 -115787082 - L1MC5 LINE L1 -204 8037 1980 440 169 0 0 chr9 2076109 2076186 -115786441 + MLT1F1 LTR MaLR 491 567 0 2235 78 58 3 chr9 2077635 2077930 -115784697 + AluY SINE Alu 1 311 0 314 251 115 20 chr9 2078084 2078202 -115784425 - MIR SINE MIR -46 162 33 2206 246 46 26 chr9 2080154 2080286 -115782341 + MER67C LTR ERV1 1 129 -581 2179 103 13 3 chr9 2080286 2080588 -115782039 - AluSc SINE Alu -4 305 1 2206 246 46 26 chr9 2080588 2081151 -115781476 + MER67C LTR ERV1 129 710 0 668 195 157 5 chr9 2082198 2082408 -115780219 + MLT1D LTR MaLR 107 348 -157 234 245 28 56 chr9 2084635 2084778 -115777849 + CT-rich Low_complexity Low_complexity 3 141 0 208 239 15 15 chr9 2086090 2086157 -115776470 + CT-rich Low_complexity Low_complexity 1 67 0 2123 101 7 3 chr9 2086531 2086828 -115775799 + AluSq SINE Alu 1 298 -15 505 149 0 28 chr9 2086839 2086946 -115775681 + (GAAA)n Simple_repeat Simple_repeat 3 106 0 1072 101 12 0 chr9 2086959 2087128 -115775499 + (GAAA)n Simple_repeat Simple_repeat 1 171 0 288 0 0 0 chr9 2087132 2087164 -115775463 + (GGAA)n Simple_repeat Simple_repeat 2 33 0 610 315 0 28 chr9 2088254 2088432 -115774195 + MLT1G1 LTR MaLR 1 173 -422 756 269 14 5 chr9 2088577 2088789 -115773838 + MLT1G1 LTR MaLR 176 389 -206 2442 254 94 11 chr9 2092787 2093539 -115769088 - MER21B LTR ERV1 0 863 49 297 294 0 0 chr9 2093550 2093618 -115769009 - MER21B LTR ERV1 -777 86 19 321 185 48 23 chr9 2093725 2093813 -115768814 + MLT1E2 LTR MaLR 122 208 -329 265 259 0 0 chr9 2094135 2094193 -115768434 + MARNA DNA Mariner 436 493 -93 351 0 0 0 chr9 2095834 2095873 -115766754 + (TTA)n Simple_repeat Simple_repeat 2 40 0 439 234 43 0 chr9 2095998 2096092 -115766535 + MIR SINE MIR 87 184 -78 686 233 0 0 chr9 2096110 2096243 -115766384 + L1MD1 LINE L1 5599 5731 -511 1769 221 48 0 chr9 2096250 2096601 -115766026 - MER74A LTR ERVL 0 558 191 3573 137 103 46 chr9 2096601 2097403 -115765224 + MER21A LTR ERV1 1 915 -16 779 184 61 31 chr9 2097444 2097607 -115765020 - MER74A LTR ERVL -390 168 1 539 138 43 11 chr9 2097611 2097705 -115764922 + L1MD1 LINE L1 5764 5860 -499 491 233 153 25 chr9 2097716 2097879 -115764748 + L1MD1 LINE L1 5992 6175 -67 5488 166 58 28 chr9 2097984 2098436 -115764191 - L1M2 LINE L1 -819 5493 5056 1606 27 0 0 chr9 2098436 2098620 -115764007 - AluY SINE Alu -127 184 1 5488 166 58 28 chr9 2098620 2098710 -115763917 - L1M2 LINE L1 -1256 5056 4970 2384 171 17 2 chr9 2098710 2099132 -115763495 - MSTC LTR MaLR 0 428 1 5488 166 58 28 chr9 2099132 2099584 -115763043 - L1M2 LINE L1 -1342 4970 4533 2092 113 7 0 chr9 2099584 2099885 -115762742 - AluSq SINE Alu -10 303 1 5488 166 58 28 chr9 2099885 2100261 -115762366 - L1M2 LINE L1 -1779 4533 3998 316 275 50 33 chr9 2100415 2100535 -115762092 - L1MEd LINE L1 -5298 821 700 35420 52 6 3 chr9 2100711 2105114 -115757513 - L1P LINE L1 -1316 4830 414 198 24 24 49 chr9 2105188 2105229 -115757398 + (TA)n Simple_repeat Simple_repeat 1 40 0 465 302 9 0 chr9 2105362 2105468 -115757159 + MIR SINE MIR 45 151 -111 481 233 74 5 chr9 2105469 2105632 -115756995 + MER63 DNA MER1_type 1 1656 -32 401 246 18 45 chr9 2105634 2105744 -115756883 + MIR SINE MIR 156 262 0 231 190 0 0 chr9 2105900 2105958 -115756669 + T-rich Low_complexity Low_complexity 1 58 0 2942 169 5 46 chr9 2106835 2107425 -115755202 - L1MB3 LINE L1 -177 6006 5441 240 111 0 0 chr9 2111157 2111193 -115751434 + (A)n Simple_repeat Simple_repeat 1 36 0 653 270 61 22 chr9 2112193 2112423 -115750204 - MIR SINE MIR -16 246 8 22 35 0 0 chr9 2115314 2115343 -115747284 + AT_rich Low_complexity Low_complexity 1 29 0 832 273 164 49 chr9 2117141 2117629 -115744998 - LTR67 LTR ERVL -11 546 3 1809 147 7 0 chr9 2119062 2119341 -115743286 + AluJb SINE Alu 1 281 -31 1085 139 0 0 chr9 2120125 2120298 -115742329 - AluSq SINE Alu -4 309 137 208 322 34 93 chr9 2121696 2122019 -115740608 - L2 LINE L2 -7 3265 2962 522 264 31 8 chr9 2123086 2123215 -115739412 + MLT1I LTR MaLR 104 235 -174 288 0 0 0 chr9 2123592 2123624 -115739003 + (A)n Simple_repeat Simple_repeat 1 32 0 326 358 129 29 chr9 2123878 2124157 -115738470 + L2 LINE L2 2966 3272 0 23 0 0 0 chr9 2124633 2124656 -115737971 + AT_rich Low_complexity Low_complexity 1 23 0 227 296 14 0 chr9 2124660 2124731 -115737896 + L1ME LINE L1 5500 5571 -595 2282 78 0 0 chr9 2125045 2125339 -115737288 - AluSg SINE Alu -15 295 2 198 216 59 0 chr9 2125771 2125822 -115736805 - L2 LINE L2 -2 3311 3258 188 300 133 11 chr9 2126023 2126113 -115736514 - MIR SINE MIR -25 237 137 471 298 34 0 chr9 2126240 2126396 -115736231 - MER20B DNA MER1_type -23 196 30 31 0 0 0 chr9 2126513 2126544 -115736083 + AT_rich Low_complexity Low_complexity 1 31 0 280 285 53 53 chr9 2126644 2126872 -115735755 + L1MC5 LINE L1 7703 7930 -31 203 182 0 0 chr9 2127348 2127381 -115735246 + polypurine Low_complexity Low_complexity 2 34 0 329 185 0 0 chr9 2128527 2128592 -115734035 + L1MB3 LINE L1 6091 6155 -28 23 0 0 0 chr9 2128608 2128631 -115733996 + AT_rich Low_complexity Low_complexity 1 23 0 319 268 94 79 chr9 2129075 2129202 -115733425 - L2 LINE L2 -7 3265 3137 203 290 93 65 chr9 2133670 2133777 -115728850 - L2 LINE L2 -4 3309 3200 231 287 139 16 chr9 2133830 2133876 -115728751 - MER20B DNA MER1_type -604 179 140 1919 166 132 3 chr9 2133876 2134255 -115728372 + MSTA LTR MaLR 1 428 0 231 287 139 16 chr9 2134255 2134330 -115728297 - MER20B DNA MER1_type -643 140 43 252 363 98 0 chr9 2134389 2134491 -115728136 - MIR3 SINE MIR -3 205 94 553 211 11 58 chr9 2135211 2135401 -115727226 - L1MDb LINE L1 -2125 3955 3775 502 167 79 18 chr9 2135398 2135512 -115727115 - L1MB3 LINE L1 -2 6181 6061 * 1044 156 6 6 chr9 2135552 2135732 -115726895 - L1MB3 LINE L1 -89 6094 5915 3834 234 60 19 chr9 2135733 2136079 -115726548 - L1MDb LINE L1 -2292 3788 3458 1932 134 0 0 chr9 2136079 2136369 -115726258 + AluSx SINE Alu 3 292 -20 3834 234 60 19 chr9 2136369 2137213 -115725414 - L1MDb LINE L1 -2622 3458 2549 623 260 47 30 chr9 2137190 2137615 -115725012 - L1MDb LINE L1 -5170 900 463 * 276 279 93 8 chr9 2137738 2137867 -115724760 - L1MDb LINE L1 -5664 406 267 21 0 0 0 chr9 2138068 2138089 -115724538 + AT_rich Low_complexity Low_complexity 1 21 0 1869 150 0 16 chr9 2138445 2138759 -115723868 + AluJb SINE Alu 4 312 0 195 313 78 55 chr9 2138922 2139050 -115723577 - MER5B DNA MER1_type -21 157 27 333 262 24 0 chr9 2139356 2139440 -115723187 - L2 LINE L2 -4 3268 3183 408 250 22 0 chr9 2141068 2141160 -115721467 + MER58 DNA MER1_type 1 94 -247 223 317 158 17 chr9 2141699 2141819 -115720808 - L2 LINE L2 -17 3255 3119 521 228 70 82 chr9 2142164 2142493 -115720134 - L1ME4a LINE L1 -266 5855 5531 186 43 0 0 chr9 2142568 2142591 -115720036 + (TG)n Simple_repeat Simple_repeat 1 23 0 409 143 0 0 chr9 2144250 2144313 -115718314 - Tigger5 DNA MER2_type 0 2323 2261 444 200 0 12 chr9 2144344 2144424 -115718203 - Tigger5 DNA MER2_type -2244 79 1 2411 44 0 3 chr9 2145406 2145699 -115716928 - AluY SINE Alu -15 296 5 582 260 40 0 chr9 2146090 2146263 -115716364 + MER68 LTR ERV1 1 180 -382 428 200 124 119 chr9 2146298 2146508 -115716119 + MER68 LTR ERV1 351 603 -2 3451 200 64 9 chr9 2147470 2148398 -115714229 + L1M3 LINE L1 4509 5485 -698 330 196 0 0 chr9 2149168 2149260 -115713367 + (TGGA)n Simple_repeat Simple_repeat 1 92 0 231 36 0 0 chr9 2149547 2149575 -115713052 + (TG)n Simple_repeat Simple_repeat 2 29 0 2273 93 3 6 chr9 2149638 2149950 -115712677 + AluSp SINE Alu 1 311 -2 574 260 25 51 chr9 2151701 2151897 -115710730 - MIR3 SINE MIR -4 204 14 276 273 52 0 chr9 2153068 2153145 -115709482 + MER5A DNA MER1_type 5 85 -104 232 277 9 9 chr9 2153223 2153335 -115709292 + (CA)n Simple_repeat Simple_repeat 2 113 0 1284 189 0 26 chr9 2153652 2153942 -115708685 + AluJo SINE Alu 25 307 0 246 302 148 16 chr9 2154080 2154269 -115708358 - MIR SINE MIR -26 236 23 423 0 0 0 chr9 2155165 2155212 -115707415 + (TG)n Simple_repeat Simple_repeat 2 48 0 23 0 0 0 chr9 2156306 2156329 -115706298 + AT_rich Low_complexity Low_complexity 1 23 0 298 274 71 0 chr9 2156983 2157096 -115705531 - Charlie8 DNA MER1_type -2253 164 44 239 298 21 21 chr9 2157352 2157446 -115705181 + MIR3 SINE MIR 113 206 -2 23 33 0 0 chr9 2159769 2159799 -115702828 + AT_rich Low_complexity Low_complexity 1 30 0 282 309 148 27 chr9 2160038 2160187 -115702440 - MIR SINE MIR -49 213 47 988 248 71 65 chr9 2160627 2160950 -115701677 + MER102a DNA MER1_type 1 325 -5 727 262 102 44 chr9 2161433 2161777 -115700850 - MLT1B LTR MaLR -26 364 1 652 260 39 14 chr9 2163626 2163834 -115698793 + MLT1A1 LTR MaLR 153 365 0 252 209 75 0 chr9 2164096 2164163 -115698464 - MLT1J LTR MaLR -341 170 99 27 29 0 0 chr9 2167050 2167084 -115695543 + AT_rich Low_complexity Low_complexity 1 34 0 71 106 0 0 chr9 2167166 2167307 -115695320 + AT_rich Low_complexity Low_complexity 1 141 0 195 311 59 37 chr9 2169148 2169283 -115693344 + MIR3 SINE MIR 30 167 -41 321 111 0 0 chr9 2169691 2169736 -115692891 + AluSg/x SINE Alu 206 250 -52 1208 158 0 21 chr9 2169736 2169958 -115692669 + AluSq SINE Alu 85 303 -10 2018 98 48 0 chr9 2169958 2170253 -115692374 + AluY SINE Alu 1 309 -2 1208 158 0 21 chr9 2170253 2170264 -115692363 + AluSq SINE Alu 303 313 0 388 270 79 101 chr9 2170264 2170631 -115691996 - Charlie7 DNA MER1_type -2253 359 1 370 225 163 31 chr9 2170631 2170760 -115691867 + MIR SINE MIR 89 234 -28 237 33 0 0 chr9 2170939 2170969 -115691658 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 184 280 264 8 chr9 2171161 2171286 -115691341 - L2 LINE L2 -33 3280 3124 2038 125 0 0 chr9 2171717 2172020 -115690607 + AluSx SINE Alu 1 303 -9 353 69 0 17 chr9 2173213 2173271 -115689356 + (TG)n Simple_repeat Simple_repeat 1 57 0 324 348 82 43 chr9 2173559 2173766 -115688861 + L3b LINE CR1 1366 1580 -3 691 239 0 7 chr9 2174378 2174520 -115688107 + MIR SINE MIR 58 198 -64 392 256 23 0 chr9 2175999 2176085 -115686542 + MIR SINE MIR 2 89 -173 2168 169 6 8 chr9 2176401 2176767 -115685860 + MLT1A1 LTR MaLR 1 365 0 678 121 0 0 chr9 2178151 2178267 -115684360 + (CTG)n Simple_repeat Simple_repeat 3 118 0 1176 150 59 24 chr9 2178863 2179117 -115683510 - MER33 DNA MER1_type -32 292 30 884 300 24 10 chr9 2179352 2179645 -115682982 - LTR16C LTR ERVL 0 491 195 475 303 45 11 chr9 2179818 2179996 -115682631 - MIR SINE MIR -59 203 20 2081 99 0 3 chr9 2185280 2185564 -115677063 + AluSx SINE Alu 1 283 -29 261 119 0 0 chr9 2185573 2185615 -115677012 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 1823 192 72 43 chr9 2186269 2186357 -115676270 + MLT1C LTR MaLR 1 85 -382 2253 86 3 0 chr9 2186357 2186659 -115675968 - AluSc SINE Alu -6 303 1 1823 192 72 43 chr9 2186659 2187012 -115675615 + MLT1C LTR MaLR 85 455 -12 327 351 73 26 chr9 2187134 2187325 -115675302 + MIR SINE MIR 35 234 -28 278 26 26 0 chr9 2187872 2187911 -115674716 + (TTTG)n Simple_repeat Simple_repeat 4 43 0 1455 191 44 86 chr9 2189869 2190277 -115672350 + MLT2B1 LTR ERVL 1 391 -129 4295 103 2 0 chr9 2243084 2243637 -115618990 - MER41A LTR ERV1 0 554 1 2233 89 0 7 chr9 2244142 2244435 -115618192 + AluSx SINE Alu 3 293 -19 724 183 8 38 chr9 2244443 2244574 -115618053 - FRAM SINE Alu -49 127 1 1080 32 0 0 chr9 2245070 2245194 -115617433 - L1PA4 LINE L1 -3 6152 6029 1042 173 6 0 chr9 2245217 2245385 -115617242 - AluJb SINE Alu -143 169 1 2583 102 8 25 chr9 2245629 2245812 -115616815 - THE1A LTR MaLR 0 355 179 2080 121 13 10 chr9 2245812 2246118 -115616509 + AluSx SINE Alu 1 307 -5 2583 102 8 25 chr9 2246118 2246295 -115616332 - THE1A LTR MaLR -176 179 1 180 245 0 0 chr9 2246584 2246637 -115615990 + (TATATG)n Simple_repeat Simple_repeat 1 53 0 6396 163 53 103 chr9 2247167 2247260 -115615367 + Tigger6b DNA MER2_type 4 100 -1497 2052 184 71 0 chr9 2247260 2247624 -115615003 - MLT1B LTR MaLR 0 390 1 6396 163 53 103 chr9 2247624 2248026 -115614601 + Tigger6b DNA MER2_type 100 521 -1076 2031 141 3 7 chr9 2248026 2248325 -115614302 + AluSx SINE Alu 1 298 -14 6396 163 53 103 chr9 2248325 2248846 -115613781 + Tigger6b DNA MER2_type 521 1067 -530 1830 121 27 40 chr9 2248846 2249143 -115613484 + AluSx SINE Alu 1 293 -19 2094 122 6 28 chr9 2249146 2249465 -115613162 + AluSx SINE Alu 1 312 0 6396 163 53 103 chr9 2249465 2249831 -115612796 + Tigger6b DNA MER2_type 1069 1297 -300 1538 182 18 14 chr9 2249831 2250111 -115612516 + AluJo SINE Alu 1 281 -31 6396 163 53 103 chr9 2250111 2250387 -115612240 + Tigger6b DNA MER2_type 1297 1585 -12 820 264 37 16 chr9 2250588 2250834 -115611793 + MIR SINE MIR 3 253 -9 224 229 0 0 chr9 2250854 2250902 -115611725 + (TAG)n Simple_repeat Simple_repeat 2 49 0 2438 71 0 0 chr9 2251855 2252151 -115610476 - AluSg SINE Alu -8 302 7 342 0 0 0 chr9 2252297 2252335 -115610292 + (T)n Simple_repeat Simple_repeat 1 38 0 1115 156 145 46 chr9 2252946 2252993 -115609634 - L1MB3 LINE L1 0 6183 6142 2305 105 3 6 chr9 2252993 2253307 -115609320 - AluSp SINE Alu 0 313 1 1115 156 145 46 chr9 2253307 2253541 -115609086 - L1MB3 LINE L1 -41 6142 5874 216 0 0 0 chr9 2254737 2254761 -115607866 + (A)n Simple_repeat Simple_repeat 1 24 0 22 0 0 0 chr9 2255292 2255314 -115607313 + AT_rich Low_complexity Low_complexity 1 22 0 28 29 0 0 chr9 2256071 2256106 -115606521 + AT_rich Low_complexity Low_complexity 1 35 0 1374 103 5 5 chr9 2259343 2259527 -115603100 - U2 snRNA snRNA -1 187 4 21 0 0 0 chr9 2259656 2259677 -115602950 + AT_rich Low_complexity Low_complexity 1 21 0 294 306 32 16 chr9 2260548 2260672 -115601955 + Charlie8 DNA MER1_type 148 273 -2144 300 206 41 14 chr9 2260725 2260798 -115601829 + Charlie8 DNA MER1_type 2343 2417 0 577 282 4 73 chr9 2260885 2261119 -115601508 + MIR SINE MIR 3 220 -42 1196 311 153 46 chr9 2262434 2263647 -115598980 - L3 LINE CR1 -22 1555 213 190 324 121 44 chr9 2264313 2264495 -115598132 - L2 LINE L2 0 3272 3077 2016 93 76 0 chr9 2264596 2264886 -115597741 - AluSq SINE Alu 0 313 2 331 244 138 50 chr9 2266526 2266686 -115595941 - MIR SINE MIR -20 242 69 271 239 65 43 chr9 2266901 2266993 -115595634 - MIR3 SINE MIR -106 102 9 221 371 124 12 chr9 2269477 2269736 -115592891 - L2 LINE L2 -643 2671 2384 201 308 0 0 chr9 2269742 2269794 -115592833 + (TG)n Simple_repeat Simple_repeat 2 53 0 * 214 194 0 0 chr9 2269759 2269795 -115592832 + (TATG)n Simple_repeat Simple_repeat 3 38 0 550 157 102 0 chr9 2270280 2270388 -115592239 - MER103 DNA DNA -46 120 2 1930 143 3 19 chr9 2271214 2271529 -115591098 + AluJb SINE Alu 1 310 -2 2366 100 0 3 chr9 2272446 2272757 -115589870 - AluSp SINE Alu -3 310 1 189 0 0 0 chr9 2272759 2272780 -115589847 + (T)n Simple_repeat Simple_repeat 1 21 0 1576 159 0 22 chr9 2273159 2273430 -115589197 - AluJb SINE Alu -43 269 5 2414 71 3 0 chr9 2274131 2274428 -115588199 - AluSp SINE Alu -15 298 1 302 290 0 40 chr9 2277700 2277800 -115584827 + L1MC4 LINE L1 6608 6703 -1339 2247 106 10 3 chr9 2279060 2279371 -115583256 - AluSq SINE Alu 0 313 1 2202 92 28 0 chr9 2279383 2279667 -115582960 - AluSx SINE Alu -20 292 1 631 169 36 90 chr9 2280813 2280930 -115581697 - L1MD2 LINE L1 -17 6342 6235 2207 104 7 10 chr9 2280930 2281228 -115581399 - AluSg SINE Alu -13 297 1 631 169 36 90 chr9 2281228 2281276 -115581351 - L1MD2 LINE L1 -124 6235 6186 3001 138 72 23 chr9 2281598 2282154 -115580473 - L1MB2 LINE L1 -2 6169 5587 227 276 0 0 chr9 2282733 2282791 -115579836 + GA-rich Low_complexity Low_complexity 2 59 0 269 346 13 26 chr9 2282865 2283018 -115579609 + MIR SINE MIR 10 160 -102 2062 116 0 80 chr9 2283066 2283402 -115579225 - AluSx SINE Alu -3 309 1 550 217 9 0 chr9 2283535 2283641 -115578986 - MER5A DNA MER1_type -80 109 3 632 209 98 33 chr9 2283691 2283906 -115578721 + MER96B DNA MER1_type? 189 417 0 1703 172 3 21 chr9 2283971 2284262 -115578365 + AluJo SINE Alu 6 291 -21 33 25 0 0 chr9 2284262 2284302 -115578325 + AT_rich Low_complexity Low_complexity 1 40 0 653 190 0 0 chr9 2284373 2284473 -115578154 + AluS SINE Alu 1 100 -213 1903 231 120 33 chr9 2285209 2285785 -115576842 - MLT1E2 LTR MaLR 0 626 1 435 236 47 66 chr9 2286819 2287031 -115575596 + L1MC4a LINE L1 5630 5837 -1971 359 244 34 34 chr9 2287625 2287744 -115574883 + MER94 DNA DNA 1 119 -15 305 258 100 74 chr9 2290488 2290906 -115571721 - L1MC5 LINE L1 0 8042 7611 2281 69 7 36 chr9 2290938 2291244 -115571383 - AluY SINE Alu -14 297 1 198 292 101 11 chr9 2292147 2292236 -115570391 - MIR SINE MIR -62 200 104 1102 168 50 0 chr9 2293452 2293631 -115568996 + MER5A DNA MER1_type 1 188 -1 2062 132 0 3 chr9 2294786 2295075 -115567552 + AluSx SINE Alu 6 293 -19 470 174 55 9 chr9 2295094 2295203 -115567424 - MER110A LTR ERV1 0 468 355 554 182 73 0 chr9 2295296 2295406 -115567221 - MER110A LTR ERV1 -350 118 1 236 304 0 22 chr9 2295453 2295545 -115567082 - L1MC/D LINE L1 -1906 5902 5813 254 174 221 0 chr9 2295575 2295661 -115566966 - L1ME4a LINE L1 -5 6116 6012 4082 209 63 46 chr9 2295782 2295935 -115566692 + L1ME LINE L1 6 155 -6409 1934 168 129 31 chr9 2295935 2296323 -115566304 - MSTA LTR MaLR 0 428 3 8177 153 76 51 chr9 2296326 2297660 -115564967 - MSTA-int LTR MaLR -1 1579 199 2279 110 0 0 chr9 2297660 2297970 -115564657 - AluY SINE Alu 0 311 2 8177 153 76 51 chr9 2297970 2298173 -115564454 - MSTA-int LTR MaLR -1381 199 3 2220 139 150 5 chr9 2298175 2298549 -115564078 - MSTA LTR MaLR 0 428 1 4082 209 63 46 chr9 2298549 2300775 -115561852 + L1ME LINE L1 156 2570 -3994 1819 172 0 10 chr9 2300775 2301077 -115561550 - AluJo SINE Alu -7 305 7 4082 209 63 46 chr9 2301077 2301386 -115561241 + L1ME LINE L1 2570 2872 -3692 1284 201 108 2 chr9 2301427 2301886 -115560741 - L1ME1 LINE L1 -20 6164 5589 1740 216 41 19 chr9 2301890 2302530 -115560097 + L1ME LINE L1 5339 5988 -596 265 254 4 44 chr9 2302522 2302659 -115559968 - L1ME LINE L1 -288 5833 5706 * 2187 132 0 0 chr9 2302736 2303046 -115559581 - AluSx SINE Alu -2 310 1 2190 120 10 0 chr9 2304049 2304349 -115558278 - AluSx SINE Alu -9 303 1 1642 163 20 27 chr9 2304671 2304972 -115557655 - AluJo SINE Alu -13 299 1 440 177 54 39 chr9 2305444 2305574 -115557053 + MER104 DNA Tc2 36 167 -13 522 223 32 38 chr9 2305579 2305736 -115556891 - L1MC4a LINE L1 -1869 5939 5784 816 273 0 6 chr9 2306538 2306721 -115555906 - MIR SINE MIR -69 193 12 182 335 88 59 chr9 2306880 2307119 -115555508 + L2 LINE L2 2583 2828 -486 1291 200 77 0 chr9 2307136 2307436 -115555191 - MER33 DNA MER1_type -1 323 1 1021 181 33 0 chr9 2307446 2307628 -115554999 - MER5A DNA MER1_type -1 188 1 537 330 45 5 chr9 2307636 2307857 -115554770 + Charlie8 DNA MER1_type 1 230 -2187 2545 32 0 23 chr9 2307857 2308166 -115554461 - AluY SINE Alu -8 303 2 709 244 84 121 chr9 2308268 2308673 -115553954 + L2 LINE L2 2883 3272 0 372 222 40 20 chr9 2309563 2309662 -115552965 + MIR3 SINE MIR 108 208 0 643 234 102 24 chr9 2311289 2311494 -115551133 - MIR SINE MIR -32 230 10 1401 152 19 60 chr9 2311843 2312076 -115550551 - Tigger2 DNA MER2_type 0 2718 2496 2223 117 0 0 chr9 2312076 2312376 -115550251 + AluSx SINE Alu 1 300 -12 1401 152 19 60 chr9 2312376 2312411 -115550216 - Tigger2 DNA MER2_type -222 2496 2461 4766 133 32 1 chr9 2312477 2313197 -115549430 - Tigger2 DNA MER2_type -1974 744 3 406 274 41 45 chr9 2313291 2313554 -115549073 + MER57B LTR ERV1 67 322 -80 378 222 0 0 chr9 2313716 2313797 -115548830 + MER57A LTR ERV1 323 403 0 1335 272 60 8 chr9 2313864 2314228 -115548399 - LTR16C LTR ERVL -10 481 99 211 64 21 43 chr9 2315432 2315479 -115547148 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 1504 140 42 45 chr9 2316308 2316572 -115546055 - L1PA15 LINE L1 -14 6151 5889 6401 156 29 17 chr9 2316635 2317960 -115544667 - L1MC1 LINE L1 0 6613 5272 8051 31 1 0 chr9 2317973 2319575 -115543052 + L1PA4 LINE L1 4553 6155 0 2845 108 13 5 chr9 2319575 2319972 -115542655 - MSTA LTR MaLR -28 400 1 6168 233 21 38 chr9 2319974 2320849 -115541778 - L1MC1 LINE L1 -2179 4247 3359 1809 133 33 0 chr9 2320849 2321119 -115541508 - AluJb SINE Alu -25 287 9 6168 233 21 38 chr9 2321119 2321270 -115541357 - L1MC1 LINE L1 -3067 3359 3207 2761 23 0 0 chr9 2321270 2321572 -115541055 + AluY SINE Alu 1 302 -9 6168 233 21 38 chr9 2321572 2322715 -115539912 - L1MC1 LINE L1 -3219 3207 2115 22 70 0 0 chr9 2322715 2322758 -115539869 + AT_rich Low_complexity Low_complexity 1 43 0 318 226 263 27 chr9 2322782 2322968 -115539659 - L1ME3A LINE L1 -10 6160 5931 235 281 0 0 chr9 2323235 2323292 -115539335 - L2 LINE L2 -50 3222 3166 644 262 36 6 chr9 2323610 2323778 -115538849 + MIR3 SINE MIR 34 206 -2 271 252 225 0 chr9 2324566 2324677 -115537950 - MIR SINE MIR -70 192 57 1969 155 3 0 chr9 2325522 2325819 -115536808 - AluJb SINE Alu -14 298 1 181 329 73 0 chr9 2327182 2327264 -115535363 + MIR SINE MIR 3 90 -172 256 253 99 11 chr9 2327373 2327464 -115535163 + MIR SINE MIR 162 260 -2 897 304 30 49 chr9 2328049 2328378 -115534249 - MLT1K LTR MaLR -264 324 2 225 374 24 0 chr9 2328382 2328465 -115534162 + MIR SINE MIR 60 144 -118 935 235 11 0 chr9 2328484 2328671 -115533956 - MER5A DNA MER1_type 0 189 1 563 228 55 118 chr9 2329050 2329133 -115533494 + MIR SINE MIR 15 102 -160 2287 87 3 0 chr9 2329133 2329420 -115533207 + AluSp SINE Alu 1 288 -25 191 59 0 29 chr9 2329423 2329457 -115533170 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 563 228 55 118 chr9 2329457 2329623 -115533004 + MIR SINE MIR 104 252 -10 513 252 65 7 chr9 2329787 2329942 -115532685 + MER103 DNA DNA 2 165 -1 1770 152 3 42 chr9 2332391 2332701 -115529926 - AluJo SINE Alu -14 298 1 347 321 22 0 chr9 2332720 2332854 -115529773 - MIR SINE MIR -75 187 51 2034 158 0 0 chr9 2333017 2333327 -115529300 + AluSx SINE Alu 1 310 -2 30 45 0 0 chr9 2333468 2333512 -115529115 + AT_rich Low_complexity Low_complexity 1 44 0 771 130 39 137 chr9 2333850 2334114 -115528513 + MER106B DNA MER1_type 1 1059 0 734 198 23 29 chr9 2334129 2334301 -115528326 - MER5B DNA MER1_type -7 171 1 370 291 158 0 chr9 2334336 2334463 -115528164 - MER117 DNA MER1_type -50 147 1 246 62 0 0 chr9 2335186 2335218 -115527409 + (GA)n Simple_repeat Simple_repeat 1 32 0 1470 250 97 24 chr9 2335239 2335787 -115526840 + L1ME3A LINE L1 5364 5951 -219 2386 84 0 0 chr9 2337222 2337521 -115525106 - AluSx SINE Alu -13 299 1 189 74 0 0 chr9 2339491 2339518 -115523109 + (TG)n Simple_repeat Simple_repeat 1 27 0 195 42 0 0 chr9 2339533 2339557 -115523070 + (GA)n Simple_repeat Simple_repeat 1 24 0 3402 257 85 67 chr9 2340015 2340910 -115521717 + L1MC4a LINE L1 5889 6766 -1042 713 136 18 0 chr9 2340910 2341020 -115521607 - L1MB5 LINE L1 0 6174 6063 3402 257 85 67 chr9 2341020 2341279 -115521348 + L1MC4a LINE L1 6766 7019 -789 1809 188 50 19 chr9 2341279 2341657 -115520970 + MLT1B LTR MaLR 1 390 0 3402 257 85 67 chr9 2341657 2342195 -115520432 + L1MC4a LINE L1 7019 7613 -195 1667 238 100 40 chr9 2342199 2342728 -115519899 + MLT1F1 LTR MaLR 3 567 0 443 198 32 76 chr9 2342760 2342917 -115519710 + L1MC4 LINE L1 7737 7886 -156 200 229 0 16 chr9 2342939 2343000 -115519627 + (TA)n Simple_repeat Simple_repeat 1 60 0 254 295 13 13 chr9 2343000 2343078 -115519549 + GA-rich Low_complexity Low_complexity 2 79 0 233 181 58 69 chr9 2343088 2343194 -115519433 + L1MD3 LINE L1 7922 8018 -21 2235 116 7 0 chr9 2343194 2343496 -115519131 - AluSp SINE Alu -9 304 1 233 181 58 69 chr9 2343496 2343518 -115519109 + L1MD3 LINE L1 8018 8039 0 3051 197 5 17 chr9 2343835 2344424 -115518203 - L1MB7 LINE L1 -9 6175 5594 2256 98 10 0 chr9 2345861 2346158 -115516469 - AluSx SINE Alu -12 300 1 558 317 42 0 chr9 2346849 2347016 -115515611 + L2 LINE L2 2980 3153 -160 1225 151 14 9 chr9 2347025 2347237 -115515390 + AluJo SINE Alu 86 298 -14 400 257 125 56 chr9 2347239 2347358 -115515269 + L2 LINE L2 3158 3290 -23 2332 115 0 0 chr9 2347358 2347662 -115514965 - AluSx SINE Alu -8 304 1 400 257 125 56 chr9 2347662 2347686 -115514941 + L2 LINE L2 3290 3311 -2 194 327 59 30 chr9 2347989 2348090 -115514537 - L2 LINE L2 -244 3069 2966 1745 227 33 85 chr9 2348107 2348675 -115513952 - MER77 LTR ERV1 -4 601 85 1544 241 56 53 chr9 2349078 2349197 -115513430 - MLT1H LTR MaLR -5 544 427 2583 89 60 20 chr9 2349197 2349547 -115513080 + THE1B LTR MaLR 1 364 0 1544 241 56 53 chr9 2349547 2349926 -115512701 - MLT1H LTR MaLR -122 427 1 456 277 117 26 chr9 2351218 2351449 -115511178 - MIR SINE MIR 0 262 11 485 283 40 7 chr9 2351576 2351728 -115510899 - LTR33A LTR ERVL 0 523 367 731 273 157 37 chr9 2352075 2352540 -115510087 - LTR33 LTR ERVL 0 521 1 1597 123 0 0 chr9 2353242 2353462 -115509165 + AluSq SINE Alu 1 220 -93 21 36 0 0 chr9 2353476 2353504 -115509123 + AT_rich Low_complexity Low_complexity 1 28 0 365 241 15 131 chr9 2353792 2353929 -115508698 - MIR3 SINE MIR -3 205 85 268 324 65 36 chr9 2354584 2354723 -115507904 + MIR3 SINE MIR 59 201 -7 403 269 135 55 chr9 2355844 2356127 -115506500 + MLT1I LTR MaLR 85 370 -39 199 333 0 31 chr9 2356299 2356395 -115506232 + L2 LINE L2 2616 2708 -606 186 275 0 0 chr9 2356876 2356945 -115505682 + (TATG)n Simple_repeat Simple_repeat 4 72 0 278 253 20 40 chr9 2358448 2358547 -115504080 - MER113 DNA MER1_type? -115 406 310 373 213 0 13 chr9 2358734 2358809 -115503818 + MIR3 SINE MIR 120 193 -15 368 309 38 51 chr9 2358983 2359139 -115503488 - MIR SINE MIR -69 139 9 652 296 117 34 chr9 2360174 2360803 -115501824 - L1MEd LINE L1 -4455 1855 1107 5945 88 21 3 chr9 2360803 2361569 -115501058 - LTR17 LTR ERV1 0 780 1 652 296 117 34 chr9 2361569 2361776 -115500851 - L1MEd LINE L1 -5203 1107 919 191 341 12 12 chr9 2362859 2362941 -115499686 - L2 LINE L2 0 3313 3232 299 261 9 36 chr9 2363492 2363603 -115499024 + CT-rich Low_complexity Low_complexity 4 111 0 460 186 41 105 chr9 2364165 2364358 -115498269 + MER69A DNA AcHobo 1 177 0 1132 291 78 18 chr9 2364524 2364961 -115497666 + LTR16B LTR ERVL 2 464 0 282 255 97 41 chr9 2365413 2365558 -115497069 - MER103 DNA DNA -3 163 11 773 198 48 39 chr9 2366100 2366307 -115496320 - L2 LINE L2 -1 3312 3104 670 258 32 26 chr9 2367409 2367599 -115495028 - MIR SINE MIR -59 203 13 21 0 0 0 chr9 2368504 2368525 -115494102 + AT_rich Low_complexity Low_complexity 1 21 0 2641 35 0 16 chr9 2368525 2368841 -115493786 - AluY SINE Alu 0 311 1 220 310 0 23 chr9 2369895 2369982 -115492645 + CT-rich Low_complexity Low_complexity 3 87 0 2979 70 123 2 chr9 2372283 2372683 -115489944 + LTR7 LTR ERV1 1 448 -2 378 73 18 0 chr9 2372685 2372740 -115489887 + HERVH LTR ERV1 1 56 -7657 295 258 57 69 chr9 2373240 2373399 -115489228 + MIR SINE MIR 98 254 -8 475 141 0 0 chr9 2373498 2373569 -115489058 - THE1B LTR MaLR 0 375 305 7624 52 2 1 chr9 2373570 2374581 -115488046 + L1PA5 LINE L1 5132 6148 -6 26 0 0 0 chr9 2374815 2374841 -115487786 + AT_rich Low_complexity Low_complexity 1 26 0 2007 112 9 37 chr9 2374841 2375162 -115487465 - THE1B LTR MaLR -49 315 4 4543 183 159 6 chr9 2375343 2376419 -115486208 - MER52A LTR ERV1 -380 1375 46 314 158 0 0 chr9 2377158 2377215 -115485412 - MER52A LTR ERV1 -1697 58 2 578 325 104 21 chr9 2378665 2379139 -115483488 - MLT1K LTR MaLR -4 584 52 3402 190 25 40 chr9 2379580 2380328 -115482299 + L1PA14 LINE L1 5422 6158 -3 1817 183 37 0 chr9 2380389 2380711 -115481916 + L1MB1 LINE L1 5830 6163 -5 210 240 0 20 chr9 2381082 2381132 -115481495 + CT-rich Low_complexity Low_complexity 2 50 0 274 321 102 15 chr9 2381924 2382061 -115480566 + MER5B DNA MER1_type 4 152 -26 218 236 0 14 chr9 2382104 2382176 -115480451 + CT-rich Low_complexity Low_complexity 3 73 0 295 116 0 0 chr9 2382193 2382236 -115480391 - MADE1 DNA Mariner -37 43 1 7817 82 4 1 chr9 2382776 2384550 -115478077 - L1PA7 LINE L1 0 6154 4376 3234 83 30 0 chr9 2384550 2384982 -115477645 + L1PA7 LINE L1 3924 4368 -1778 218 272 25 49 chr9 2385475 2385556 -115477071 - MER5B DNA MER1_type -98 80 2 765 280 20 0 chr9 2385599 2385799 -115476828 - MIR SINE MIR -1 261 58 655 75 0 0 chr9 2385911 2385991 -115476636 + MADE1 DNA Mariner 1 80 0 378 257 6 26 chr9 2386002 2386176 -115476451 + MER63A DNA MER1_type 1 208 -2 1864 141 0 0 chr9 2386499 2386792 -115475835 - AluJb SINE Alu 0 306 14 200 211 0 0 chr9 2387159 2387197 -115475430 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 943 313 40 52 chr9 2387600 2388105 -115474522 - MLT1K LTR MaLR -13 575 77 306 0 0 0 chr9 2388137 2388171 -115474456 + (CA)n Simple_repeat Simple_repeat 2 35 0 184 217 150 0 chr9 2388240 2388300 -115474327 + MIR SINE MIR 194 262 0 479 261 49 35 chr9 2388718 2388860 -115473767 - MIR SINE MIR -111 151 8 225 303 30 0 chr9 2388935 2389001 -115473626 - MIR SINE MIR -9 253 186 951 332 47 3 chr9 2389331 2389714 -115472913 - MLT1I LTR MaLR -7 402 3 419 338 25 25 chr9 2389840 2390000 -115472627 - L2 LINE L2 -3 3269 3110 305 273 39 47 chr9 2390262 2390390 -115472237 - MIR SINE MIR -58 204 78 22 35 0 0 chr9 2392138 2392167 -115470460 + AT_rich Low_complexity Low_complexity 1 29 0 745 158 8 24 chr9 2392170 2392297 -115470330 + AluJo SINE Alu 83 207 -105 267 318 26 3 chr9 2392886 2393041 -115469586 + MIR SINE MIR 49 247 -15 2108 117 3 7 chr9 2393041 2393339 -115469288 - AluSg SINE Alu -13 297 1 326 209 30 0 chr9 2394293 2394360 -115468267 - L3 LINE CR1 -110 1467 1399 589 329 74 21 chr9 2394564 2394984 -115467643 - L1MC4a LINE L1 -1914 5894 5453 1154 350 119 25 chr9 2395085 2396104 -115466523 - L3 LINE CR1 -166 1411 298 228 262 35 64 chr9 2396222 2396363 -115466264 - L1MC4a LINE L1 -1858 5950 5814 228 286 0 0 chr9 2397150 2397206 -115465421 - L3 LINE CR1 -1266 311 256 207 100 0 0 chr9 2397206 2397236 -115465391 + (A)n Simple_repeat Simple_repeat 1 30 0 260 288 32 64 chr9 2397828 2397953 -115464674 + MIR SINE MIR 14 134 -128 260 248 8 34 chr9 2398498 2398615 -115464012 - Charlie7 DNA MER1_type -1 2611 2498 459 0 0 0 chr9 2398651 2398702 -115463925 + (CA)n Simple_repeat Simple_repeat 2 52 0 321 283 9 9 chr9 2398705 2398811 -115463816 + (CATATA)n Simple_repeat Simple_repeat 2 107 0 22 56 0 0 chr9 2399596 2399632 -115462995 + AT_rich Low_complexity Low_complexity 1 36 0 1069 256 62 9 chr9 2399658 2399998 -115462629 - MLT1C LTR MaLR -104 363 6 1408 216 17 11 chr9 2401709 2401996 -115460631 + AluJo SINE Alu 4 292 -20 802 285 111 68 chr9 2401998 2402574 -115460053 + L1ME4a LINE L1 5519 6119 -2 378 280 61 23 chr9 2403513 2403645 -115458982 + MIR3 SINE MIR 50 186 -22 402 236 112 45 chr9 2404305 2404483 -115458144 + MIR SINE MIR 67 256 -6 214 203 188 16 chr9 2405008 2405072 -115457555 + MIR SINE MIR 178 252 -10 274 362 28 28 chr9 2405590 2405767 -115456860 - L2 LINE L2 -38 3275 3099 183 231 96 0 chr9 2406139 2406191 -115456436 + L2 LINE L2 3216 3272 0 402 262 28 19 chr9 2406402 2406509 -115456118 - L2 LINE L2 -1 3312 3205 1815 155 6 43 chr9 2406563 2406886 -115455741 + AluJb SINE Alu 1 311 -1 2390 225 53 47 chr9 2406949 2408170 -115454457 + L1ME1 LINE L1 4724 5967 -199 1264 184 0 0 chr9 2408170 2408376 -115454251 + AluJb SINE Alu 92 297 -15 569 205 29 35 chr9 2408383 2408554 -115454073 + L1ME1 LINE L1 5979 6148 -18 287 322 76 18 chr9 2408663 2408834 -115453793 - L2 LINE L2 -252 3061 2881 202 328 15 0 chr9 2408989 2409056 -115453571 + GA-rich Low_complexity Low_complexity 5 72 0 21 0 0 0 chr9 2410043 2410064 -115452563 + AT_rich Low_complexity Low_complexity 1 21 0 41371 43 3 11 chr9 2410085 2411998 -115450629 + L1PA4 LINE L1 3 1928 -4227 7425 36 4 0 chr9 2411998 2413017 -115449610 - L1PA3 LINE L1 -3 6152 5132 41371 43 3 11 chr9 2413017 2417305 -115445322 + L1PA4 LINE L1 1928 6155 0 453 312 35 70 chr9 2417856 2418225 -115444402 + L2 LINE L2 2917 3272 0 378 282 8 8 chr9 2418357 2418488 -115444139 - MER117 DNA MER1_type -54 143 13 1837 169 118 25 chr9 2418951 2419390 -115443237 + MLT2B1 LTR ERVL 1 480 -40 240 200 0 0 chr9 2419390 2419445 -115443182 + (TA)n Simple_repeat Simple_repeat 1 55 0 286 106 43 0 chr9 2419489 2419536 -115443091 + MLT2C2 LTR ERVL 416 464 0 536 240 60 21 chr9 2419809 2420019 -115442608 - MLT1L LTR MaLR -26 589 266 244 237 17 0 chr9 2420135 2420194 -115442433 - MIR SINE MIR -17 245 186 1480 178 73 0 chr9 2420317 2420592 -115442035 + AluJo SINE Alu 1 295 -17 2450 136 18 0 chr9 2420615 2421006 -115441621 - L1PA16 LINE L1 -9 6157 5760 12801 230 48 7 chr9 2421006 2424886 -115437741 - L1PA16 LINE L1 -645 5521 1485 680 228 64 0 chr9 2424889 2425060 -115437567 - MIR SINE MIR -64 198 17 454 243 29 0 chr9 2425080 2425216 -115437411 - MLT1L LTR MaLR -339 276 137 236 391 6 32 chr9 2425419 2425575 -115437052 + L2 LINE L2 3121 3272 0 252 254 0 0 chr9 2425879 2425934 -115436693 - MER45B DNA AcHobo 0 1040 986 * 1539 295 102 30 chr9 2425929 2426505 -115436122 - MER45C DNA AcHobo -320 633 16 2855 86 10 15 chr9 2426708 2427113 -115435514 + L1PA10 LINE L1 5761 6163 -5 1047 163 59 0 chr9 2427142 2427363 -115435264 + L1MA4 LINE L1 6062 6295 -5 1454 72 88 5 chr9 2427600 2427793 -115434834 - AluSc SINE Alu -16 293 85 344 319 125 7 chr9 2427853 2427997 -115434630 - MER45C DNA AcHobo -353 600 440 508 113 0 0 chr9 2427997 2428068 -115434559 - AluY SINE Alu -228 83 13 528 343 59 9 chr9 2428203 2428422 -115434205 + MIR SINE MIR 2 231 -31 201 147 0 0 chr9 2428815 2428849 -115433778 + (TTCA)n Simple_repeat Simple_repeat 2 35 0 194 260 13 65 chr9 2429446 2429523 -115433104 + MER5A DNA MER1_type 3 75 -114 * 636 197 170 0 chr9 2429468 2429615 -115433012 - MER5A DNA MER1_type -9 180 9 335 260 67 0 chr9 2430013 2430117 -115432510 + MIR SINE MIR 104 214 -48 190 239 43 0 chr9 2430686 2430732 -115431895 - L2 LINE L2 -1 3312 3265 928 288 14 47 chr9 2430733 2431156 -115431471 + MLT1I LTR MaLR 1 409 0 406 276 124 39 chr9 2431179 2431436 -115431191 - L2 LINE L2 -112 3201 2923 1754 298 132 24 chr9 2431459 2432326 -115430301 - L2 LINE L2 -620 2694 1735 267 336 9 0 chr9 2433956 2434066 -115428561 + GA-rich Low_complexity Low_complexity 4 114 0 194 62 31 0 chr9 2436254 2436286 -115426341 + (TG)n Simple_repeat Simple_repeat 1 33 0 204 239 0 22 chr9 2436863 2436909 -115425718 + (CCTA)n Simple_repeat Simple_repeat 2 46 0 285 310 120 6 chr9 2437632 2437790 -115424837 - L2 LINE L2 -917 2397 2222 325 361 87 21 chr9 2437890 2438131 -115424496 - L3 LINE CR1 -48 1529 1273 188 273 23 0 chr9 2438219 2438263 -115424364 + L2 LINE L2 3142 3186 -86 383 314 36 6 chr9 2438322 2438493 -115424134 - MIR SINE MIR -49 213 40 351 323 43 18 chr9 2438965 2439045 -115423582 + MIR SINE MIR 63 140 -122 1598 140 23 57 chr9 2439045 2439345 -115423282 + AluJo SINE Alu 13 302 -10 351 323 43 18 chr9 2439345 2439428 -115423199 + MIR SINE MIR 140 230 -32 1777 100 46 0 chr9 2441981 2442242 -115420385 + L1PA15 LINE L1 5881 6153 -12 2267 87 10 10 chr9 2442242 2442542 -115420085 + AluSc SINE Alu 1 300 -9 180 0 0 0 chr9 2442549 2442569 -115420058 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1724 176 47 29 chr9 2442587 2442995 -115419632 + MLT1C LTR MaLR 51 465 -2 2131 91 0 70 chr9 2443819 2443962 -115418665 + AluSg SINE Alu 1 152 -158 207 0 0 0 chr9 2443962 2443985 -115418642 + (TA)n Simple_repeat Simple_repeat 1 23 0 2131 91 0 70 chr9 2443985 2444170 -115418457 + AluSg SINE Alu 152 306 -4 2654 92 20 8 chr9 2445964 2446357 -115416270 - L1PA13 LINE L1 -2 6161 5764 2495 152 16 28 chr9 2446421 2446854 -115415773 - MSTA LTR MaLR 0 428 1 252 311 67 17 chr9 2447852 2447971 -115414656 + L1ME3A LINE L1 6018 6142 -28 21 0 0 0 chr9 2448253 2448274 -115414353 + AT_rich Low_complexity Low_complexity 1 21 0 257 172 151 0 chr9 2448308 2448401 -115414226 + L1ME LINE L1 5682 5788 -374 180 262 24 0 chr9 2448736 2448778 -115413849 - L3 LINE CR1 -2 1575 1533 29 60 0 0 chr9 2448793 2448843 -115413784 + AT_rich Low_complexity Low_complexity 1 50 0 2287 94 0 3 chr9 2449079 2449376 -115413251 - AluSq SINE Alu -12 301 6 466 350 75 52 chr9 2449448 2449983 -115412644 - L3 LINE CR1 -51 1526 980 342 354 161 32 chr9 2450142 2450614 -115412013 - L3 LINE CR1 -1044 533 1 23 33 0 0 chr9 2450643 2450673 -115411954 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr9 2450723 2450746 -115411881 + AT_rich Low_complexity Low_complexity 1 23 0 213 163 0 0 chr9 2450774 2450823 -115411804 + (TA)n Simple_repeat Simple_repeat 1 49 0 1739 187 0 13 chr9 2450919 2451219 -115411408 - AluJo SINE Alu -13 299 4 258 56 0 0 chr9 2451444 2451480 -115411147 + (TA)n Simple_repeat Simple_repeat 2 37 0 39 22 0 0 chr9 2451482 2451528 -115411099 + AT_rich Low_complexity Low_complexity 1 46 0 2211 119 3 3 chr9 2451539 2451851 -115410776 - AluSq SINE Alu -1 312 1 200 315 0 0 chr9 2451867 2451921 -115410706 + A-rich Low_complexity Low_complexity 2 55 0 21 82 0 0 chr9 2451927 2451976 -115410651 + AT_rich Low_complexity Low_complexity 1 49 0 1115 242 11 0 chr9 2451993 2452266 -115410361 + Charlie4a DNA MER1_type 201 476 -32 1353 267 144 11 chr9 2453088 2453749 -115408878 + L2 LINE L2 2549 3311 -2 337 174 0 23 chr9 2454286 2454372 -115408255 + CT-rich Low_complexity Low_complexity 2 85 0 1761 162 10 23 chr9 2454372 2454674 -115407953 - AluJo SINE Alu -14 298 1 317 284 30 8 chr9 2454677 2454811 -115407816 + CT-rich Low_complexity Low_complexity 5 141 0 3351 153 23 22 chr9 2455922 2455985 -115406642 - MER7C DNA MER2_type -2426 602 541 2571 58 0 0 chr9 2455985 2456293 -115406334 + AluY SINE Alu 1 308 -3 3351 153 23 22 chr9 2456293 2456830 -115405797 - MER7C DNA MER2_type -2487 541 1 1246 276 53 29 chr9 2457153 2457606 -115405021 + LTR16C LTR ERVL 1 464 -27 1082 270 59 23 chr9 2457633 2458074 -115404553 + ERVL LTR ERVL 685 1141 -3855 689 287 7 6 chr9 2458094 2458381 -115404246 + ERVL LTR ERVL 2565 2912 -2852 1763 349 31 35 chr9 2458410 2459839 -115402788 + ERVL LTR ERVL 3979 4979 -17 762 364 24 12 chr9 2459904 2460330 -115402297 + LTR16B LTR ERVL 34 464 0 786 156 7 22 chr9 2460383 2460518 -115402109 + FLAM_C SINE Alu 1 133 0 5775 53 10 3 chr9 2460638 2461367 -115401260 - L1PA5 LINE L1 -1 6153 5420 2066 108 35 0 chr9 2462512 2462800 -115399827 + AluSx SINE Alu 1 298 -14 509 283 88 0 chr9 2462824 2462983 -115399644 + MER5B DNA MER1_type 4 176 -2 370 294 115 23 chr9 2463320 2463538 -115399089 + MLT1L LTR MaLR 360 597 -18 2134 118 7 3 chr9 2463542 2463847 -115398780 - AluSx SINE Alu -6 306 1 461 264 39 0 chr9 2463916 2464045 -115398582 - MIR SINE MIR -48 214 81 180 247 173 12 chr9 2464816 2464897 -115397730 + MIR SINE MIR 127 220 -42 968 226 102 37 chr9 2465121 2465524 -115397103 + MLT1C LTR MaLR 6 434 -33 191 77 0 0 chr9 2465525 2465551 -115397076 + MIR SINE MIR 120 145 -117 391 288 106 7 chr9 2465627 2465829 -115396798 - MIR SINE MIR 0 262 2 2682 36 0 0 chr9 2466435 2466742 -115395885 + AluY SINE Alu 1 307 -4 252 333 49 24 chr9 2467043 2467166 -115395461 - L2 LINE L2 -443 2871 2746 802 264 60 87 chr9 2467313 2467749 -115394878 - L2 LINE L2 -786 2528 2105 993 260 66 27 chr9 2468178 2468585 -115394042 + L1MC3 LINE L1 5863 6285 -1500 494 284 14 14 chr9 2468601 2468742 -115393885 + L1MD3 LINE L1 7154 7294 -701 1776 133 68 11 chr9 2468742 2469006 -115393621 - AluSx SINE Alu -27 285 7 2992 204 58 133 chr9 2469012 2469936 -115392691 + L1MD3 LINE L1 6291 7212 -596 331 269 65 0 chr9 2469936 2470044 -115392583 + MLT1F1 LTR MaLR 1 115 -452 2992 204 58 133 chr9 2470044 2470278 -115392349 + L1MD3 LINE L1 7212 7462 -346 501 134 47 12 chr9 2470305 2470475 -115392152 + L1MD3 LINE L1 7755 7982 -13 222 37 0 0 chr9 2473486 2473513 -115389114 + (CA)n Simple_repeat Simple_repeat 2 28 0 264 264 103 35 chr9 2473580 2473667 -115388960 - L2 LINE L2 -31 3241 3149 1868 151 13 23 chr9 2474883 2475182 -115387445 - AluJb SINE Alu -16 296 1 192 77 0 0 chr9 2475273 2475299 -115387328 + (T)n Simple_repeat Simple_repeat 1 26 0 593 296 35 6 chr9 2475568 2475737 -115386890 + MIR SINE MIR 48 221 -41 192 284 68 14 chr9 2477808 2477882 -115384745 - MIR SINE MIR 0 262 185 321 272 88 24 chr9 2477981 2478106 -115384521 + MIR SINE MIR 118 250 -12 301 215 89 13 chr9 2480178 2480257 -115382370 - MIR SINE MIR 0 262 178 1698 188 7 16 chr9 2481972 2482280 -115380347 + AluJo SINE Alu 1 305 -7 902 197 53 61 chr9 2482333 2482561 -115380066 + MIR SINE MIR 7 232 -30 22 35 0 0 chr9 2483454 2483483 -115379144 + AT_rich Low_complexity Low_complexity 1 29 0 2277 88 3 0 chr9 2484533 2484828 -115377799 + AluSg SINE Alu 1 296 -14 333 0 0 0 chr9 2486230 2486267 -115376360 + (CCCTAA)n Simple_repeat Simple_repeat 5 41 0 22 0 0 0 chr9 2486390 2486412 -115376215 + AT_rich Low_complexity Low_complexity 1 22 0 262 143 14 100 chr9 2487490 2487630 -115374997 + (TATAA)n Simple_repeat Simple_repeat 1 128 0 24 0 0 0 chr9 2487734 2487758 -115374869 + AT_rich Low_complexity Low_complexity 1 24 0 671 236 94 29 chr9 2487920 2488196 -115374431 - L1M4 LINE L1 -3356 2790 2497 961 289 66 29 chr9 2488286 2488846 -115373781 - L1MC4a LINE L1 -1899 5909 5324 2382 82 0 0 chr9 2488846 2489149 -115373478 - AluY SINE Alu -8 303 1 961 289 66 29 chr9 2489149 2489179 -115373448 - L1MC4a LINE L1 -2484 5324 5297 366 239 77 26 chr9 2489277 2489394 -115373233 + MARNA DNA Mariner 286 408 -178 206 261 31 0 chr9 2489738 2489803 -115372824 + (TATG)n Simple_repeat Simple_repeat 4 70 0 312 298 93 15 chr9 2492724 2492819 -115369808 - L1ME3A LINE L1 -223 5947 5861 843 240 34 5 chr9 2492819 2493027 -115369600 - MER58C DNA MER1_type 0 215 2 312 298 93 15 chr9 2493027 2493136 -115369491 - L1ME3A LINE L1 -309 5861 5727 588 138 62 8 chr9 2493776 2493906 -115368721 - L1MB2 LINE L1 -2 6169 6033 307 339 18 0 chr9 2494692 2494804 -115367823 - MIR SINE MIR -70 192 79 252 0 0 0 chr9 2495571 2495599 -115367028 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 2195 118 3 0 chr9 2495800 2496096 -115366531 + AluSx SINE Alu 1 297 -15 243 329 24 0 chr9 2496386 2496468 -115366159 + MIR SINE MIR 179 262 0 216 329 200 0 chr9 2496751 2496891 -115365736 + MIR3 SINE MIR 20 187 -21 229 94 0 0 chr9 2497794 2497826 -115364801 + U6 snRNA snRNA 1 32 -75 188 148 0 0 chr9 2498293 2498320 -115364307 + L2 LINE L2 3263 3289 -24 210 143 0 0 chr9 2498493 2498528 -115364099 - MIR SINE MIR -14 248 214 1155 267 122 13 chr9 2501219 2501597 -115361030 - MLT1G1 LTR MaLR -176 419 1 1847 161 10 22 chr9 2502686 2502997 -115359630 - AluJo SINE Alu -5 307 1 2351 82 0 0 chr9 2503092 2503385 -115359242 - AluY SINE Alu -18 293 1 2200 92 0 0 chr9 2504099 2504381 -115358246 - AluY SINE Alu -29 282 1 319 338 76 6 chr9 2504470 2504627 -115358000 + MIR SINE MIR 40 207 -55 795 202 83 99 chr9 2504773 2505219 -115357408 + LTR37B LTR ERV1 6 444 -24 2061 117 45 48 chr9 2505300 2505676 -115356951 + THE1C LTR MaLR 1 375 0 391 305 22 48 chr9 2506771 2506938 -115355689 + MIR3 SINE MIR 5 177 -31 368 205 68 43 chr9 2506968 2507084 -115355543 + LTR8 LTR ERV1 1 119 -572 260 33 101 0 chr9 2507084 2507128 -115355499 - MLT2A1 LTR ERVL 0 444 402 481 247 0 23 chr9 2507243 2507417 -115355210 + (TATATG)n Simple_repeat Simple_repeat 3 172 0 353 39 19 0 chr9 2507418 2507470 -115355157 - MLT2A1 LTR ERVL -391 53 1 3011 74 0 7 chr9 2507535 2507548 -115355079 - MLT2A1 LTR ERVL -40 404 392 336 102 0 0 chr9 2507548 2507597 -115355030 + (TG)n Simple_repeat Simple_repeat 2 50 0 3011 74 0 7 chr9 2507597 2507990 -115354637 - MLT2A1 LTR ERVL -52 392 1 1853 156 49 138 chr9 2507990 2508649 -115353978 + LTR8A LTR ERV1 128 727 0 643 237 24 6 chr9 2508926 2509095 -115353532 + MER69A DNA AcHobo 3 174 -3 312 332 54 73 chr9 2509333 2509592 -115353035 + MIR SINE MIR 3 256 -6 370 353 62 12 chr9 2509746 2509987 -115352640 + MLT1J LTR MaLR 158 410 -101 840 191 26 0 chr9 2510015 2510167 -115352460 - MER5A DNA MER1_type -30 159 4 296 205 12 12 chr9 2510170 2510253 -115352374 + MLT1J LTR MaLR 416 498 -13 258 188 0 0 chr9 2510349 2510397 -115352230 - L2 LINE L2 -3 3310 3263 787 176 79 0 chr9 2510584 2510749 -115351878 - MER5B DNA MER1_type 0 178 1 187 217 196 33 chr9 2510760 2510852 -115351775 - MIR3 SINE MIR -90 118 12 313 288 136 33 chr9 2511236 2511479 -115351148 - L3 LINE CR1 -2 1575 1308 1333 273 53 68 chr9 2512172 2512851 -115349776 - MER21B LTR ERV1 -171 692 24 867 329 106 20 chr9 2513289 2513782 -115348845 - L3 LINE CR1 -78 1499 965 303 242 65 81 chr9 2514068 2514192 -115348435 + MLT1K LTR MaLR 380 501 -87 809 280 100 11 chr9 2514192 2514571 -115348056 - MER95 LTR ERV 0 431 19 518 290 54 67 chr9 2514579 2514910 -115347717 - MER57-int LTR ERV1 -479 7337 7011 405 190 13 0 chr9 2515115 2515194 -115347433 + Tigger5 DNA MER2_type 1 80 -2243 313 217 43 0 chr9 2515194 2515263 -115347364 - Tigger5 DNA MER2_type -5 2318 2247 272 262 0 36 chr9 2515259 2515343 -115347284 + Tigger5 DNA MER2_type 2243 2323 0 * 297 0 0 0 chr9 2516410 2516443 -115346184 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1484 162 68 54 chr9 2516448 2516726 -115345901 - AluJo SINE Alu -30 282 1 286 313 36 23 chr9 2516970 2517235 -115345392 - MER57-int LTR ERV1 -1390 6147 5018 655 293 34 81 chr9 2517435 2518347 -115344280 - MER57-int LTR ERV1 -1778 5759 2017 2445 138 74 5 chr9 2518685 2519105 -115343522 - LTR47A LTR ERVL 0 452 4 2489 68 3 3 chr9 2520306 2520616 -115342011 - AluY SINE Alu -1 310 1 348 316 13 19 chr9 2520798 2520953 -115341674 - MER57-int LTR ERV1 -5429 1372 1219 5344 143 21 25 chr9 2521246 2522003 -115340624 - L1PA15 LINE L1 -1 6164 5425 1924 149 0 17 chr9 2522003 2522331 -115340296 - AluSg SINE Alu 0 310 1 5344 143 21 25 chr9 2522331 2522739 -115339888 - L1PA15 LINE L1 -740 5425 5017 15252 142 11 26 chr9 2522747 2523992 -115338635 - L1PA10 LINE L1 0 6168 4906 2212 128 0 0 chr9 2523992 2524290 -115338337 + AluSx SINE Alu 1 298 -14 15252 142 11 26 chr9 2524290 2526618 -115336009 - L1PA10 LINE L1 -1262 4906 2645 705 189 0 8 chr9 2526618 2526745 -115335882 - THE1B LTR MaLR 0 364 239 878 314 116 16 chr9 2526776 2527209 -115335418 - L3 LINE CR1 -901 676 201 307 347 5 24 chr9 2528180 2528365 -115334262 + MIR SINE MIR 36 212 -50 1468 179 40 27 chr9 2528984 2529285 -115333342 + AluSx SINE Alu 1 305 -7 3363 144 47 66 chr9 2529499 2530071 -115332556 + LTR8A LTR ERV1 1 557 -170 1715 194 7 13 chr9 2530071 2530381 -115332246 + AluJb SINE Alu 1 308 -4 3363 144 47 66 chr9 2530381 2530549 -115332078 + LTR8A LTR ERV1 557 727 0 1107 228 72 79 chr9 2530853 2531272 -115331355 + L2 LINE L2 2636 3054 -259 1583 219 36 11 chr9 2531272 2531637 -115330990 + MLT1A2 LTR MaLR 1 374 0 1107 228 72 79 chr9 2531637 2531886 -115330741 + L2 LINE L2 3054 3303 -10 350 317 63 55 chr9 2531886 2532052 -115330575 - L1ME LINE L1 -404 5717 5554 1841 179 7 0 chr9 2532052 2532354 -115330273 + AluJb SINE Alu 1 304 -8 350 317 63 55 chr9 2532354 2532644 -115329983 - L1ME LINE L1 -567 5554 5257 447 339 28 24 chr9 2532860 2533108 -115329519 - L1ME LINE L1 -1124 5022 4774 2134 144 0 0 chr9 2533482 2533794 -115328833 - AluSx SINE Alu 0 312 1 1900 188 86 46 chr9 2533983 2534087 -115328540 - LTR49 LTR ERV1 0 595 497 2623 128 36 5 chr9 2534087 2534502 -115328125 + MSTA LTR MaLR 1 428 0 1900 188 86 46 chr9 2534502 2534957 -115327670 - LTR49 LTR ERV1 -98 497 14 2038 127 0 0 chr9 2534957 2535272 -115327355 - AluSx SINE Alu 0 315 1 2007 146 33 0 chr9 2535701 2536003 -115326624 - AluSx SINE Alu 0 312 1 185 41 41 122 chr9 2536330 2536379 -115326248 - MIR3 SINE MIR -32 176 132 2553 191 62 61 chr9 2536408 2537101 -115325526 + LTR8A LTR ERV1 34 727 0 262 236 28 47 chr9 2537140 2537246 -115325381 + L1MC4 LINE L1 7899 8002 -40 1191 171 19 27 chr9 2537389 2537511 -115325116 + MER34B LTR ERV1 1 122 -443 2478 148 130 11 chr9 2537511 2537719 -115324908 + LTR49 LTR ERV1 1 183 -412 249 33 0 0 chr9 2537719 2537749 -115324878 + (CA)n Simple_repeat Simple_repeat 2 31 0 2478 148 130 11 chr9 2537749 2538072 -115324555 + LTR49 LTR ERV1 183 595 0 1191 171 19 27 chr9 2538072 2538206 -115324421 + MER34B LTR ERV1 122 255 -310 2210 151 26 3 chr9 2538208 2538592 -115324035 - MER57A LTR ERV1 -3 400 8 267 91 23 0 chr9 2538593 2538637 -115323990 + MER34B LTR ERV1 251 295 -270 2418 179 33 81 chr9 2538771 2539414 -115323213 - LTR9 LTR ERV1 0 612 1 1557 170 44 11 chr9 2539414 2539684 -115322943 - AluJo SINE Alu -33 279 1 1309 124 21 8 chr9 2540156 2540386 -115322241 + MER34B LTR ERV1 303 535 -30 1257 195 112 57 chr9 2540386 2540825 -115321802 + LTR56 LTR ERV1 1 437 0 1963 188 91 117 chr9 2540972 2541717 -115320910 + LTR8A LTR ERV1 2 727 0 2726 144 43 34 chr9 2542180 2542750 -115319877 - LTR49 LTR ERV1 -17 636 1 * 2825 159 37 12 chr9 2542750 2543260 -115319367 - MER34C LTR ERV1 -24 561 39 2742 100 47 10 chr9 2543349 2543797 -115318830 + LTR56 LTR ERV1 6 437 0 2187 122 0 3 chr9 2543977 2544281 -115318346 - AluSg SINE Alu -7 303 1 848 229 92 42 chr9 2544375 2544615 -115318012 + MLT1B LTR MaLR 3 254 -136 9677 202 15 18 chr9 2544626 2547076 -115315551 - L1P4 LINE L1 -588 5578 3141 901 261 35 0 chr9 2547219 2547476 -115315151 + Charlie5 DNA MER1_type 2 267 -2345 197 65 32 0 chr9 2547477 2547508 -115315119 + (TTTTA)n Simple_repeat Simple_repeat 4 35 0 683 176 8 25 chr9 2547511 2547630 -115314997 - AluJb SINE Alu -194 118 2 1245 239 25 28 chr9 2547635 2547804 -115314823 + Charlie5 DNA MER1_type 256 425 -2199 1668 150 221 11 chr9 2547804 2547972 -115314655 - MSTA LTR MaLR 0 428 297 186 43 0 0 chr9 2547972 2547995 -115314632 + (GA)n Simple_repeat Simple_repeat 1 23 0 1668 150 221 11 chr9 2547995 2548179 -115314448 - MSTA LTR MaLR -131 297 2 1245 239 25 28 chr9 2548179 2548336 -115314291 + Charlie5 DNA MER1_type 425 581 -2043 1924 181 111 2 chr9 2548532 2549001 -115313626 + Charlie5 DNA MER1_type 924 1443 -1169 276 222 50 119 chr9 2549244 2549496 -115313131 - LTR37A LTR ERV1 -165 261 26 2449 124 55 6 chr9 2549496 2549843 -115312784 - THE1B LTR MaLR 0 364 1 2673 156 27 9 chr9 2550052 2550502 -115312125 - MER65C LTR ERV1 -2 459 2 2371 86 0 7 chr9 2550949 2551252 -115311375 + AluY SINE Alu 2 302 -9 268 167 21 0 chr9 2551298 2551346 -115311281 + MLT1E2 LTR MaLR 2 50 -604 2104 161 76 55 chr9 2551373 2551691 -115310936 + MER31A LTR ERV1 1 334 -151 2584 39 6 6 chr9 2551691 2552002 -115310625 - AluY SINE Alu 0 311 1 2104 161 76 55 chr9 2552002 2552155 -115310472 + MER31A LTR ERV1 334 482 -3 1569 214 122 57 chr9 2552164 2552640 -115309987 + MLT1E2 LTR MaLR 120 626 0 3836 110 15 19 chr9 2552737 2553263 -115309364 - MER1A DNA MER1_type -3 524 1 274 257 112 62 chr9 2553325 2553504 -115309123 - MIR SINE MIR -15 247 60 2052 175 77 44 chr9 2553560 2554012 -115308615 - MLT1C LTR MaLR 0 467 1 203 365 0 0 chr9 2554520 2554605 -115308022 - MIR SINE MIR -8 254 170 2429 86 0 0 chr9 2554822 2555123 -115307504 - AluSp SINE Alu -12 301 1 537 280 33 22 chr9 2555402 2555584 -115307043 - MIR SINE MIR -51 211 28 1906 249 50 21 chr9 2555693 2556214 -115306413 - MLT1F LTR MaLR 0 542 7 3843 131 24 15 chr9 2556216 2556805 -115305822 + LTR49 LTR ERV1 1 594 -1 267 208 10 146 chr9 2557062 2557158 -115305469 + MIR3 SINE MIR 96 178 -30 3349 130 45 2 chr9 2557239 2557730 -115304897 + MER41E LTR ERV1 1 512 0 211 321 38 38 chr9 2557766 2557897 -115304730 - MIR SINE MIR -58 150 20 232 250 17 0 chr9 2557975 2558035 -115304592 + (CTA)n Simple_repeat Simple_repeat 2 62 0 201 282 97 65 chr9 2558087 2558211 -115304416 - MIR SINE MIR -82 180 53 523 283 19 47 chr9 2558957 2559147 -115303480 - MIR SINE MIR -51 211 27 466 241 62 53 chr9 2559160 2559354 -115303273 - MIR SINE MIR -19 243 49 1461 231 89 100 chr9 2559424 2559723 -115302904 + L2 LINE L2 346 647 -2666 3643 158 82 32 chr9 2559723 2560415 -115302212 + LTR8A LTR ERV1 1 727 0 1461 231 89 100 chr9 2560415 2561194 -115301433 + L2 LINE L2 647 3308 -5 245 106 0 43 chr9 2561499 2561546 -115301081 + (CATA)n Simple_repeat Simple_repeat 1 45 0 243 216 0 54 chr9 2561547 2561597 -115301030 - L1MC4 LINE L1 -1342 6700 6654 1901 152 0 16 chr9 2561597 2561900 -115300727 - AluJo SINE Alu -6 306 9 243 216 0 54 chr9 2561900 2561923 -115300704 - L1MC4 LINE L1 -1388 6654 6631 605 292 11 11 chr9 2562592 2562770 -115299857 + MIR SINE MIR 8 185 -77 631 291 80 37 chr9 2563075 2563425 -115299202 - MLT1I LTR MaLR -38 371 7 268 326 121 7 chr9 2563494 2563635 -115298992 - MIR SINE MIR 0 262 106 1841 142 6 49 chr9 2563640 2563965 -115298662 + AluJb SINE Alu 1 311 -1 361 273 175 0 chr9 2564140 2564283 -115298344 + MER117 DNA MER1_type 4 171 -26 192 298 0 0 chr9 2564299 2564356 -115298271 + MIR SINE MIR 90 146 -62 2302 109 0 6 chr9 2564673 2564984 -115297643 - AluSx SINE Alu 0 312 4 801 302 67 27 chr9 2565125 2565453 -115297174 - LTR33 LTR ERVL -8 513 173 923 215 24 29 chr9 2566267 2566472 -115296155 - MER3 DNA MER1_type 0 209 6 413 294 123 0 chr9 2566636 2566806 -115295821 - MIR SINE MIR 0 262 72 232 234 62 0 chr9 2566810 2566874 -115295753 + MER116 DNA Mariner 11 78 -2 208 174 196 0 chr9 2566876 2566922 -115295705 - MIR SINE MIR -183 79 25 195 256 171 0 chr9 2566965 2567047 -115295580 + MIR SINE MIR 157 252 -10 761 111 151 58 chr9 2567649 2567789 -115294838 + MER53 DNA DNA 1 161 -28 1010 230 56 90 chr9 2567789 2568167 -115294460 + MLT1A1 LTR MaLR 1 365 0 761 111 151 58 chr9 2568167 2568198 -115294429 + MER53 DNA DNA 161 188 -1 753 212 35 6 chr9 2568364 2568534 -115294093 + MER5A DNA MER1_type 4 178 -11 413 306 50 25 chr9 2568544 2568704 -115293923 + MIR SINE MIR 25 188 -74 1042 204 37 28 chr9 2569239 2569455 -115293172 - MER20 DNA MER1_type -1 218 1 1026 203 20 15 chr9 2569565 2569793 -115292834 - AluJo SINE Alu 0 313 85 424 275 67 17 chr9 2569802 2569922 -115292705 - MIR SINE MIR -111 151 26 460 287 28 58 chr9 2571031 2571265 -115291362 + MIR SINE MIR 20 238 -24 221 311 59 42 chr9 2571269 2571388 -115291239 + MIR SINE MIR 106 226 -36 318 311 120 18 chr9 2571678 2571845 -115290782 + MER91B DNA MER1_type 1 184 -6 432 269 168 0 chr9 2572136 2572285 -115290342 + MIR SINE MIR 20 193 -69 22 0 0 0 chr9 2572307 2572329 -115290298 + AT_rich Low_complexity Low_complexity 1 22 0 1591 51 51 0 chr9 2572609 2572806 -115289821 - L1PA4 LINE L1 -2 6153 5947 2064 162 3 26 chr9 2573007 2573352 -115289275 - MER1B DNA MER1_type 0 337 1 327 257 95 19 chr9 2574400 2574505 -115288122 + MARNA DNA Mariner 66 178 -408 499 307 70 23 chr9 2574590 2574805 -115287822 + MARNA DNA Mariner 313 537 -49 423 264 75 87 chr9 2575133 2575688 -115286939 + LTR50 LTR ERVL 1 520 -3 351 221 75 29 chr9 2576928 2577085 -115285542 + MLT1H LTR MaLR 12 177 -334 385 245 47 63 chr9 2577194 2577380 -115285247 + MLT1H LTR MaLR 333 530 -19 125 81 0 0 chr9 2577406 2577736 -115284891 + AT_rich Low_complexity Low_complexity 1 300 0 111 89 0 0 chr9 2577740 2578033 -115284594 + AT_rich Low_complexity Low_complexity 1 293 0 566 277 135 31 chr9 2578177 2578466 -115284161 + L2 LINE L2 2995 3313 0 23 0 0 0 chr9 2579179 2579202 -115283425 + AT_rich Low_complexity Low_complexity 1 23 0 286 244 47 110 chr9 2579680 2579807 -115282820 - MIR3 SINE MIR -53 155 37 461 239 92 8 chr9 2580237 2580367 -115282260 + MIR SINE MIR 14 154 -108 215 326 76 22 chr9 2583263 2583355 -115279272 - L2 LINE L2 -44 3228 3132 819 284 47 0 chr9 2583779 2584015 -115278612 - L1MC/D LINE L1 -2045 5763 5517 496 263 56 15 chr9 2584018 2584264 -115278363 - L1MC/D LINE L1 -748 5398 5220 330 213 118 66 chr9 2584391 2584527 -115278100 - L1MC/D LINE L1 -1156 4990 4848 2085 142 0 16 chr9 2584865 2585175 -115277452 + AluSx SINE Alu 1 305 -7 2288 114 0 0 chr9 2585230 2585529 -115277098 - AluSx SINE Alu -13 299 1 264 299 123 75 chr9 2585767 2585824 -115276803 + L3 LINE CR1 1380 1433 -144 2899 89 5 5 chr9 2585824 2586204 -115276423 - L1PA8 LINE L1 -1 6171 5792 264 299 123 75 chr9 2586204 2586333 -115276294 + L3 LINE CR1 1433 1575 -2 301 211 132 0 chr9 2586678 2586754 -115275873 - MIR SINE MIR -75 187 102 189 74 0 0 chr9 2586785 2586812 -115275815 + (TTA)n Simple_repeat Simple_repeat 2 28 0 202 286 179 9 chr9 2586860 2586972 -115275655 + L2 LINE L2 3151 3281 -32 404 211 0 0 chr9 2586989 2587065 -115275562 + L1MD1 LINE L1 6156 6231 -11 262 177 39 21 chr9 2587255 2587328 -115275299 + MIR SINE MIR 91 169 -39 335 164 0 14 chr9 2587611 2587684 -115274943 + MER3 DNA MER1_type 96 167 -42 31 0 0 0 chr9 2587692 2587723 -115274904 + AT_rich Low_complexity Low_complexity 1 31 0 1549 188 7 24 chr9 2587723 2588015 -115274612 - AluJb SINE Alu -25 287 1 417 104 60 0 chr9 2588015 2588082 -115274545 + MER3 DNA MER1_type 139 209 0 191 319 149 11 chr9 2588962 2589056 -115273571 - MIR3 SINE MIR -47 161 55 395 269 41 58 chr9 2589362 2589533 -115273094 - MIR3 SINE MIR -25 183 16 24 0 0 0 chr9 2590653 2590677 -115271950 + AT_rich Low_complexity Low_complexity 1 24 0 628 284 38 38 chr9 2591082 2591346 -115271281 - MLT1J LTR MaLR -8 503 240 864 233 10 26 chr9 2591347 2591540 -115271087 + AluJo SINE Alu 122 311 -1 310 258 47 74 chr9 2592025 2592215 -115270412 - L1ME4a LINE L1 -2 6119 5935 3042 60 19 0 chr9 2592256 2592624 -115270003 - L1PA8 LINE L1 -7 6165 5791 564 283 30 18 chr9 2592995 2593161 -115269466 + MIR3 SINE MIR 34 201 -7 229 189 75 0 chr9 2593237 2593290 -115269337 + L2 LINE L2 3257 3313 0 322 292 62 59 chr9 2593398 2593546 -115269081 - L1M4 LINE L1 -1630 4516 4370 2028 138 0 10 chr9 2593546 2593844 -115268783 - AluSx SINE Alu -17 295 1 322 292 62 59 chr9 2593844 2594099 -115268528 - L1M4 LINE L1 -1776 4370 4112 869 265 73 83 chr9 2594104 2594631 -115267996 - L1M4 LINE L1 -996 5150 4632 1381 170 134 0 chr9 2594631 2594884 -115267743 - AluSx SINE Alu -25 287 1 869 265 73 83 chr9 2594884 2595138 -115267489 - L1M4 LINE L1 -1514 4632 4377 294 214 0 0 chr9 2595140 2595196 -115267431 + MLT1F1 LTR MaLR 3 58 -509 867 248 63 38 chr9 2595237 2595475 -115267152 + MLT1F1 LTR MaLR 50 293 -274 366 315 81 35 chr9 2595553 2595959 -115266668 - L1M4 LINE L1 -1757 4389 3965 411 21 0 0 chr9 2595973 2596021 -115266606 + (CA)n Simple_repeat Simple_repeat 2 49 0 308 313 15 37 chr9 2596029 2596192 -115266435 - L1ME4a LINE L1 -487 5634 5495 974 243 21 0 chr9 2596228 2596463 -115266164 - MIR SINE MIR 0 262 23 1438 195 47 0 chr9 2596465 2596742 -115265885 - AluJo SINE Alu -14 298 9 191 269 247 0 chr9 2596807 2596900 -115265727 - MIR SINE MIR -4 258 143 994 167 6 36 chr9 2597118 2597286 -115265341 - FRAM SINE Alu -3 163 1 500 307 98 19 chr9 2597348 2597563 -115265064 + MIR SINE MIR 20 251 -11 765 268 9 28 chr9 2597738 2597951 -115264676 - MIR SINE MIR -25 237 29 640 280 69 0 chr9 2598199 2598417 -115264210 + MIR SINE MIR 29 261 -1 258 244 144 11 chr9 2598983 2599073 -115263554 - MER5B DNA MER1_type -51 127 26 1047 171 15 20 chr9 2599753 2599952 -115262675 - AluJo SINE Alu -21 291 94 313 221 158 11 chr9 2599991 2600086 -115262541 + MIR3 SINE MIR 47 155 -53 255 297 30 20 chr9 2600890 2600991 -115261636 - MIR SINE MIR -50 212 111 34 0 0 0 chr9 2601180 2601214 -115261413 + AT_rich Low_complexity Low_complexity 1 34 0 1705 181 7 19 chr9 2601247 2601557 -115261070 - AluJo SINE Alu -6 306 1 200 244 22 0 chr9 2601565 2601610 -115261017 - MER5A DNA MER1_type -79 110 65 611 111 202 0 chr9 2602155 2602254 -115260373 + AluJb SINE Alu 182 300 -12 243 225 56 28 chr9 2602260 2602331 -115260296 + MER5A DNA MER1_type 117 189 0 1384 160 36 4 chr9 2603525 2603750 -115258877 - MER46A DNA MER2_type 0 236 5 321 276 43 9 chr9 2603956 2604072 -115258555 - MIR SINE MIR -48 214 95 800 219 48 28 chr9 2604095 2604169 -115258458 - L1MB4 LINE L1 -23 6157 6086 1487 122 5 0 chr9 2604169 2604374 -115258253 + AluSx SINE Alu 1 206 -106 800 219 48 28 chr9 2604374 2604586 -115258041 - L1MB4 LINE L1 -94 6086 5950 2701 23 0 0 chr9 2604896 2605195 -115257432 + AluY SINE Alu 3 301 -10 1858 130 38 17 chr9 2605293 2605585 -115257042 - AluJb SINE Alu -14 298 1 327 49 0 0 chr9 2605617 2605658 -115256969 + (CA)n Simple_repeat Simple_repeat 2 42 0 308 267 10 20 chr9 2606139 2606240 -115256387 + MIR SINE MIR 150 249 -13 370 237 51 70 chr9 2606331 2606361 -115256266 - MIR SINE MIR -102 160 131 333 0 0 0 chr9 2606361 2606398 -115256229 + (TG)n Simple_repeat Simple_repeat 2 38 0 370 237 51 70 chr9 2606398 2606523 -115256104 - MIR SINE MIR -131 131 8 2143 132 0 0 chr9 2607076 2607371 -115255256 + AluSx SINE Alu 1 295 -17 2381 164 10 10 chr9 2608984 2609373 -115253254 + MLT1B LTR MaLR 1 389 -1 2219 125 3 0 chr9 2610440 2610744 -115251883 + AluSp SINE Alu 1 305 -8 1753 246 87 24 chr9 2610769 2611310 -115251317 - MER90 LTR ERV1 0 575 1 213 167 42 0 chr9 2612327 2612375 -115250252 + CT-rich Low_complexity Low_complexity 3 52 0 180 77 0 0 chr9 2612620 2612646 -115249981 + (T)n Simple_repeat Simple_repeat 1 26 0 2086 121 20 0 chr9 2613647 2613945 -115248682 + AluSx SINE Alu 1 304 -8 327 203 0 0 chr9 2613945 2614014 -115248613 + (TA)n Simple_repeat Simple_repeat 1 69 0 276 30 0 0 chr9 2614014 2614047 -115248580 + (CA)n Simple_repeat Simple_repeat 2 34 0 492 260 0 0 chr9 2614155 2614255 -115248372 - MER58B DNA MER1_type 0 341 242 472 153 0 14 chr9 2614301 2614373 -115248254 + AluSg/x SINE Alu 86 156 -154 532 160 180 82 chr9 2614384 2614578 -115248049 - MER58B DNA MER1_type -128 213 1 315 313 53 33 chr9 2614611 2614761 -115247866 - L1MC4a LINE L1 -1845 5963 5811 915 197 0 38 chr9 2614833 2615016 -115247611 - AluJb SINE Alu -3 309 134 1969 130 3 10 chr9 2615016 2615317 -115247310 - AluSx SINE Alu -13 299 1 274 351 0 0 chr9 2615319 2615433 -115247194 - L1MC4a LINE L1 -379 5742 5629 336 278 41 0 chr9 2616089 2616186 -115246441 + MIR3 SINE MIR 96 196 -12 238 292 29 109 chr9 2616210 2616297 -115246330 + L2 LINE L2 3146 3220 -52 1638 169 14 27 chr9 2616297 2616592 -115246035 + AluJo SINE Alu 1 291 -21 238 292 29 109 chr9 2616592 2616641 -115245986 + L2 LINE L2 3220 3271 -1 722 285 94 84 chr9 2616690 2617273 -115245354 + MLT1L LTR MaLR 19 607 -8 2388 83 0 0 chr9 2618242 2618544 -115244083 + AluY SINE Alu 1 302 -9 302 291 127 63 chr9 2619011 2619169 -115243458 + MIR SINE MIR 20 187 -75 563 323 96 27 chr9 2619194 2619274 -115243353 - L2 LINE L2 0 3272 3199 1973 159 0 3 chr9 2619274 2619576 -115243051 + AluSx SINE Alu 1 301 -11 563 323 96 27 chr9 2619576 2619901 -115242726 - L2 LINE L2 -73 3199 2839 2446 89 0 0 chr9 2619923 2620225 -115242402 + AluSc SINE Alu 1 302 -7 183 330 8 93 chr9 2620237 2620355 -115242272 - MIR SINE MIR -126 136 29 298 263 61 35 chr9 2622382 2622496 -115240131 + L2 LINE L2 3197 3313 0 2697 145 20 57 chr9 2622713 2623258 -115239369 + L1MB4 LINE L1 5655 6179 -1 506 338 32 18 chr9 2623350 2623569 -115239058 + MIR SINE MIR 29 250 -12 2815 110 0 3 chr9 2623685 2624050 -115238577 - THE1B LTR MaLR 0 364 1 503 231 59 117 chr9 2624391 2624863 -115237764 - HAL1 LINE L1 -32 2475 2031 2313 250 80 57 chr9 2624868 2625982 -115236645 - HAL1 LINE L1 -838 1669 530 313 298 43 27 chr9 2626132 2626320 -115236307 + L1ME4a LINE L1 5725 5915 -206 2267 108 3 0 chr9 2626766 2627063 -115235564 - AluY SINE Alu -13 298 1 509 317 54 32 chr9 2627071 2627443 -115235184 - L1M4 LINE L1 -2055 4091 3712 3797 152 17 2 chr9 2627545 2628124 -115234503 - L1PA15 LINE L1 0 6165 5578 977 233 49 0 chr9 2628152 2628397 -115234230 + L1M4 LINE L1 2476 2732 -3414 3224 245 33 16 chr9 2628400 2629319 -115233308 - L1M4 LINE L1 -1694 4452 3519 2211 107 3 7 chr9 2629834 2630134 -115232493 + AluSg SINE Alu 1 299 -11 437 341 29 39 chr9 2630815 2631020 -115231607 - MIR SINE MIR -58 204 2 2312 109 69 29 chr9 2631991 2632341 -115230286 - THE1B LTR MaLR 0 364 1 11275 102 2 81 chr9 2632341 2634055 -115228572 - THE1B-int LTR MaLR 0 1580 1 2380 125 43 14 chr9 2634057 2634409 -115228218 - THE1B LTR MaLR -2 362 1 375 247 58 39 chr9 2634998 2635152 -115227475 - L2 LINE L2 -202 3070 2914 221 114 45 0 chr9 2636623 2636667 -115225960 + T-rich Low_complexity Low_complexity 2 47 0 207 265 20 0 chr9 2636836 2636885 -115225742 + L3 LINE CR1 1526 1575 -2 905 289 141 18 chr9 2637497 2638167 -115224460 + L2 LINE L2 2563 3308 -5 180 0 0 0 chr9 2639070 2639090 -115223537 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 187 297 164 16 chr9 2639127 2639255 -115223372 - MIR SINE MIR -50 212 66 236 273 141 41 chr9 2640838 2640959 -115221668 + MIR SINE MIR 112 244 -18 289 289 193 15 chr9 2641324 2641459 -115221168 - MIR SINE MIR -22 240 82 252 0 0 0 chr9 2643074 2643102 -115219525 + (T)n Simple_repeat Simple_repeat 1 28 0 1027 84 30 0 chr9 2643602 2643733 -115218894 - AluJb SINE Alu -177 135 1 869 192 34 0 chr9 2644899 2645076 -115217551 - MER5A DNA MER1_type 0 189 7 1636 166 42 93 chr9 2650202 2650367 -115212260 + MLT1B LTR MaLR 1 173 -217 2155 117 0 0 chr9 2650367 2650658 -115211969 + AluSx SINE Alu 15 305 -7 1636 166 42 93 chr9 2650658 2650901 -115211726 + MLT1B LTR MaLR 173 388 -2 2498 65 6 37 chr9 2655576 2655899 -115206728 + AluSq SINE Alu 1 313 0 1654 188 36 36 chr9 2660591 2660952 -115201675 + MLT1A1 LTR MaLR 1 361 -4 522 221 44 0 chr9 2661301 2661414 -115201213 + MER94 DNA DNA 1 118 -16 189 0 0 0 chr9 2662055 2662076 -115200551 + (ATTG)n Simple_repeat Simple_repeat 2 22 0 2484 71 0 7 chr9 2662076 2662385 -115200242 - AluY SINE Alu -4 307 1 751 304 24 0 chr9 2664761 2664968 -115197659 + MLT1J LTR MaLR 70 281 -230 333 0 0 0 chr9 2666956 2666993 -115195634 + (CA)n Simple_repeat Simple_repeat 1 37 0 189 0 0 0 chr9 2666992 2667013 -115195614 + (TC)n Simple_repeat Simple_repeat 1 21 0 * 4557 157 29 8 chr9 2668183 2669296 -115193331 - L1MA4A LINE L1 -6 6150 5062 2135 133 10 0 chr9 2669951 2670260 -115192367 + AluSq SINE Alu 1 312 -1 468 272 108 15 chr9 2670423 2670618 -115192009 - MIR SINE MIR -35 227 15 725 181 29 103 chr9 2670824 2671028 -115191599 - MER5A DNA MER1_type 0 189 1 2327 87 0 7 chr9 2672162 2672462 -115190165 - AluSg SINE Alu -12 298 1 244 294 151 8 chr9 2672921 2673047 -115189580 + L2 LINE L2 3122 3265 -7 2106 137 61 9 chr9 2673595 2673938 -115188689 + MER46B DNA MER2_type 1 236 0 181 355 16 0 chr9 2675015 2675077 -115187550 - L3 LINE CR1 -1460 117 55 225 0 0 0 chr9 2677867 2677892 -115184735 + (CCG)n Simple_repeat Simple_repeat 1 25 0 307 286 24 0 chr9 2677929 2678013 -115184614 + G-rich Low_complexity Low_complexity 2 87 0 205 122 0 41 chr9 2678125 2678174 -115184453 + (GGGGA)n Simple_repeat Simple_repeat 5 51 0 23 33 0 0 chr9 2678293 2678323 -115184304 + GC_rich Low_complexity Low_complexity 1 30 0 227 366 24 0 chr9 2680288 2680370 -115182257 + MIR SINE MIR 65 148 -60 186 338 13 0 chr9 2680681 2680758 -115181869 - L2 LINE L2 0 3272 3195 715 265 45 9 chr9 2680972 2681195 -115181432 + MLT1I LTR MaLR 39 269 -140 781 255 82 0 chr9 2681269 2681453 -115181174 + MER58C DNA MER1_type 2 200 -15 347 193 121 12 chr9 2681494 2681577 -115181050 + MLT1I LTR MaLR 318 409 0 1625 161 23 33 chr9 2681961 2682266 -115180361 + AluJb SINE Alu 1 302 -10 313 328 5 7 chr9 2682404 2682538 -115180089 - MER5A DNA MER1_type -43 146 1 1059 159 74 0 chr9 2682964 2683140 -115179487 - MER5A DNA MER1_type 0 189 1 444 332 89 43 chr9 2683192 2683584 -115179043 + MLT1K LTR MaLR 162 571 -17 852 232 32 41 chr9 2683953 2684173 -115178454 + MER20B DNA MER1_type 2 219 0 777 249 92 9 chr9 2685391 2685608 -115177019 + MIR SINE MIR 2 236 -26 518 247 45 32 chr9 2685676 2685830 -115176797 + MER5B DNA MER1_type 3 158 -20 2422 97 3 0 chr9 2686689 2686999 -115175628 + AluSx SINE Alu 1 311 -1 5020 139 19 1 chr9 2687885 2688683 -115173944 + L1MA4A LINE L1 5486 6297 -6 1422 161 24 69 chr9 2689939 2690274 -115172353 - L1MA7 LINE L1 -2 6289 5970 2231 93 0 42 chr9 2690279 2690591 -115172036 - AluSx SINE Alu -13 299 1 331 303 8 8 chr9 2692514 2692633 -115169994 + MIR SINE MIR 32 150 -112 1526 233 81 40 chr9 2693216 2693748 -115168879 - MER20B DNA MER1_type -1 782 229 1291 172 19 34 chr9 2693802 2694070 -115168557 - AluJo SINE Alu -7 305 42 417 225 78 56 chr9 2694074 2694216 -115168411 - MER20B DNA MER1_type -608 175 31 406 294 73 14 chr9 2694607 2694737 -115167890 + MIR SINE MIR 18 168 -94 1466 213 96 0 chr9 2694737 2695070 -115167557 - MLT1A1 LTR MaLR 0 365 1 406 294 73 14 chr9 2695070 2695157 -115167470 + MIR SINE MIR 168 248 -14 4764 106 1 7 chr9 2695219 2695891 -115166736 - L1PA13 LINE L1 -13 6150 5483 4719 107 1 0 chr9 2695230 2695906 -115166721 - L1PA13 LINE L1 -19 6144 5468 354 295 18 18 chr9 2697388 2697500 -115165127 - L1ME4a LINE L1 -48 6073 5962 789 193 0 0 chr9 2697541 2697681 -115164946 + FRAM SINE Alu 1 140 -36 2187 106 0 3 chr9 2698314 2698606 -115164021 - AluSx SINE Alu -21 291 1 190 154 51 0 chr9 2698775 2698814 -115163813 + L2 LINE L2 184 224 -3090 300 234 0 64 chr9 2700013 2700107 -115162520 + CT-rich Low_complexity Low_complexity 1 88 0 306 125 0 0 chr9 2701244 2701292 -115161335 + (TCC)n Simple_repeat Simple_repeat 1 48 0 1951 173 3 0 chr9 2701292 2701598 -115161029 - AluJb SINE Alu -5 307 1 322 274 121 40 chr9 2702273 2702435 -115160192 + MIR SINE MIR 16 179 -56 223 312 184 32 chr9 2702544 2702762 -115159865 + MIR SINE MIR 11 261 -1 28 0 0 0 chr9 2704293 2704321 -115158306 + AT_rich Low_complexity Low_complexity 1 28 0 457 235 176 15 chr9 2704539 2704743 -115157884 - L1ME4a LINE L1 -4 6117 5881 338 332 161 10 chr9 2704889 2705058 -115157569 - L1ME4a LINE L1 -452 5669 5466 437 253 11 79 chr9 2705058 2705248 -115157379 + MER5B DNA MER1_type 1 177 -1 338 332 161 10 chr9 2705248 2705271 -115157356 - L1ME4a LINE L1 -655 5466 5448 352 311 78 38 chr9 2706092 2706462 -115156165 + MLT1J LTR MaLR 108 492 -19 1873 169 28 104 chr9 2706706 2707169 -115155458 + MSTB1 LTR MaLR 1 428 -4 8865 173 40 7 chr9 2707173 2708771 -115153856 + MSTB-int LTR MaLR 1 1651 0 2104 188 39 12 chr9 2708771 2709186 -115153441 + MSTB LTR MaLR 1 426 0 2078 151 5 16 chr9 2710374 2710746 -115151881 - L1PB1 LINE L1 -2 6149 5782 424 174 23 0 chr9 2710746 2710832 -115151795 + L1PB1 LINE L1 5777 5864 -287 278 137 0 0 chr9 2710847 2710898 -115151729 - L1PB1 LINE L1 -597 5554 5504 300 289 0 22 chr9 2710922 2711012 -115151615 + L1MC4 LINE L1 6616 6703 -1339 13905 195 27 7 chr9 2711017 2713642 -115148985 - L1P5 LINE L1 -360 6507 3936 207 0 0 0 chr9 2713642 2713665 -115148962 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 13905 195 27 7 chr9 2713665 2716633 -115145994 - L1P5 LINE L1 -2931 3936 653 402 21 0 0 chr9 2717204 2717251 -115145376 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 295 250 156 19 chr9 2718493 2718653 -115143974 - L1ME3A LINE L1 0 6170 5989 2869 80 22 59 chr9 2718757 2719218 -115143409 - MLT2A1 LTR ERVL 0 444 1 290 271 35 80 chr9 2719225 2719686 -115142941 - L1MEc LINE L1 -4917 1393 954 2411 69 0 0 chr9 2719714 2720020 -115142607 - AluY SINE Alu -5 306 1 292 184 51 20 chr9 2720301 2720399 -115142228 - L1MC5 LINE L1 -30 7931 7831 389 351 121 4 chr9 2720411 2720659 -115141968 - L1MEc LINE L1 -5292 827 551 762 282 194 5 chr9 2721240 2721652 -115140975 + LTR33A LTR ERVL 5 494 -29 429 301 21 43 chr9 2722717 2722903 -115139724 + MIR SINE MIR 11 192 -70 1456 204 29 50 chr9 2724282 2724664 -115137963 - MLT1A2 LTR MaLR 0 374 1 635 178 0 75 chr9 2724746 2724892 -115137735 - AluJo/FRAM SINE Alu -3 309 175 317 183 56 14 chr9 2724892 2724963 -115137664 - Alu SINE Alu -251 52 2 507 279 161 43 chr9 2725419 2725766 -115136861 + L2 LINE L2 2924 3311 -2 224 266 164 31 chr9 2725778 2725906 -115136721 - MIR SINE MIR -66 196 52 2242 120 0 7 chr9 2726172 2726471 -115136156 - AluSx SINE Alu -15 297 1 2094 131 108 10 chr9 2727454 2727842 -115134785 + MSTB LTR MaLR 1 426 0 1879 199 14 0 chr9 2728103 2728474 -115134153 + MLT1B LTR MaLR 15 390 0 264 276 0 0 chr9 2728673 2728731 -115133896 - L2 LINE L2 -2 3270 3213 381 22 0 0 chr9 2729499 2729545 -115133082 - MLT2C1 LTR ERVL 0 520 475 1125 128 0 0 chr9 2729546 2729726 -115132901 + (TA)n Simple_repeat Simple_repeat 1 180 0 374 258 0 43 chr9 2729736 2729922 -115132705 + (CATATA)n Simple_repeat Simple_repeat 3 180 0 405 0 0 0 chr9 2729923 2729968 -115132659 + (TG)n Simple_repeat Simple_repeat 1 45 0 1665 193 15 9 chr9 2730006 2730343 -115132284 - MLT2C1 LTR ERVL -58 339 1 405 309 11 56 chr9 2730435 2730613 -115132014 - L3 LINE CR1 -112 1465 1296 229 135 0 0 chr9 2730713 2730750 -115131877 - MER103 DNA DNA -1 165 129 939 249 111 47 chr9 2730938 2731343 -115131284 - MLT1H LTR MaLR 0 549 119 242 313 117 31 chr9 2731453 2731616 -115131011 - MER5B DNA MER1_type -1 177 1 1677 165 47 52 chr9 2732329 2732711 -115129916 - MLT1B LTR MaLR -10 380 1 854 236 64 40 chr9 2733244 2733276 -115129351 + MIR SINE MIR 7 37 -225 1107 202 52 0 chr9 2733276 2733489 -115129138 + MER58A DNA MER1_type 1 224 0 854 236 64 40 chr9 2733489 2733706 -115128921 + MIR SINE MIR 37 262 0 1764 167 20 0 chr9 2734600 2734893 -115127734 + AluJo SINE Alu 1 299 -13 3038 81 26 2 chr9 2735074 2735495 -115127132 + MLT2A2 LTR ERVL 23 453 0 5250 141 47 1 chr9 2735539 2736504 -115126123 - L1MC1 LINE L1 -1 6612 5604 2240 105 10 0 chr9 2736504 2736800 -115125827 - AluSp SINE Alu -14 299 1 4288 111 28 7 chr9 2736818 2737505 -115125122 - L1MA3 LINE L1 0 6305 5605 210 71 0 0 chr9 2737505 2737533 -115125094 + (TTTAA)n Simple_repeat Simple_repeat 3 30 0 998 148 0 0 chr9 2737534 2737696 -115124931 - L1PA15 LINE L1 -31 6134 5973 19445 134 29 10 chr9 2737705 2740933 -115121694 - L1M1 LINE L1 -4262 3303 14 1309 229 61 11 chr9 2740938 2741298 -115121329 - L1MC1 LINE L1 -823 5603 5216 201 39 0 0 chr9 2741298 2741324 -115121303 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 1309 229 61 11 chr9 2741324 2741403 -115121224 - L1MC1 LINE L1 -1210 5216 5142 * 1603 267 6 0 chr9 2741402 2741892 -115120735 - L1MC1 LINE L1 -3420 3006 2514 2521 179 53 2 chr9 2741892 2742477 -115120150 + L1PBa LINE L1 1758 2372 -4491 5964 92 14 22 chr9 2742477 2743398 -115119229 - L1PA12 LINE L1 -4 6164 5236 4272 76 43 3 chr9 2743398 2743980 -115118647 + LTR14B LTR ERVK 4 608 0 5964 92 14 22 chr9 2743980 2744589 -115118038 - L1PA12 LINE L1 -932 5236 4638 2200 132 0 0 chr9 2744589 2744885 -115117742 + AluSx SINE Alu 1 296 -16 5964 92 14 22 chr9 2744885 2745137 -115117490 - L1PA12 LINE L1 -1530 4638 4385 559 239 22 0 chr9 2745138 2745272 -115117355 - L1MC1 LINE L1 -6284 142 6 447 246 44 11 chr9 2745699 2745882 -115116745 - L1ME4a LINE L1 -2 6119 5931 378 323 62 0 chr9 2745906 2746067 -115116560 - MIR SINE MIR -2 260 90 21 71 0 0 chr9 2746128 2746170 -115116457 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr9 2746247 2746268 -115116359 + AT_rich Low_complexity Low_complexity 1 21 0 2447 63 0 3 chr9 2746914 2747215 -115115412 - AluY SINE Alu -11 300 1 338 216 129 52 chr9 2747482 2747598 -115115029 - MIR3 SINE MIR -6 202 78 1565 268 26 35 chr9 2747830 2748400 -115114227 - L1MD3 LINE L1 -18 7977 7413 476 202 0 23 chr9 2748402 2748531 -115114096 + L1MD3 LINE L1 6938 7063 -932 3145 207 32 2 chr9 2748538 2749165 -115113462 + MER82 DNA MER2_type 8 653 0 725 214 61 31 chr9 2749170 2749399 -115113228 + L1MC4a LINE L1 7015 7250 -558 24 0 0 0 chr9 2749532 2749556 -115113071 + AT_rich Low_complexity Low_complexity 1 24 0 333 282 137 8 chr9 2749765 2749896 -115112731 + L2 LINE L2 3122 3269 -3 813 262 187 18 chr9 2750323 2750708 -115111919 - MLT1J2 LTR MaLR 0 450 1 226 301 70 24 chr9 2751401 2751614 -115111013 - L1ME4a LINE L1 -4 6117 5895 599 208 214 0 chr9 2751834 2752002 -115110625 + MIR SINE MIR 58 261 -1 952 173 9 61 chr9 2752056 2752287 -115110340 + MER20 DNA MER1_type 1 219 0 706 216 29 39 chr9 2752515 2752723 -115109904 - MER106A DNA MER1_type -2 234 29 205 347 95 11 chr9 2753684 2753779 -115108848 + L2 LINE L2 3161 3263 -9 1554 201 7 26 chr9 2754967 2755270 -115107357 - AluJb SINE Alu -15 297 1 464 295 70 8 chr9 2755490 2755619 -115107008 + L2 LINE L2 3136 3272 0 5846 83 30 52 chr9 2756214 2757827 -115104800 + L1PA10 LINE L1 4558 6152 -16 2242 117 0 13 chr9 2758494 2758811 -115103816 + AluSq SINE Alu 1 313 0 22 0 0 0 chr9 2759571 2759593 -115103034 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr9 2760439 2760460 -115102167 + (T)n Simple_repeat Simple_repeat 1 21 0 29 0 0 0 chr9 2761076 2761105 -115101522 + AT_rich Low_complexity Low_complexity 1 29 0 215 274 0 0 chr9 2761382 2761433 -115101194 + G-rich Low_complexity Low_complexity 6 56 0 340 263 53 45 chr9 2762329 2762462 -115100165 - MIR SINE MIR -18 244 111 580 261 141 5 chr9 2763299 2763498 -115099129 + MIR SINE MIR 29 254 -8 823 243 79 69 chr9 2765007 2765414 -115097213 + HsTC2a DNA Tc2 94 504 -240 455 156 22 11 chr9 2765415 2765505 -115097122 + HsTC2a DNA Tc2 651 741 -1 250 292 83 0 chr9 2766121 2766241 -115096386 - L3b LINE CR1 -351 1232 1103 258 225 56 11 chr9 2766253 2766342 -115096285 - MER94 DNA DNA -9 125 33 863 274 155 44 chr9 2766380 2766792 -115095835 - L3 LINE CR1 -492 1085 615 2203 92 0 3 chr9 2766792 2767114 -115095513 + AluSg SINE Alu 1 321 0 863 274 155 44 chr9 2767114 2767157 -115095470 - L3 LINE CR1 -962 615 578 1144 199 85 99 chr9 2767159 2767652 -115094975 - LTR29 LTR ERV1 0 622 137 276 283 23 48 chr9 2767627 2767774 -115094853 - MER34 LTR ERV1 -409 133 1 * 182 329 25 63 chr9 2767795 2767953 -115094674 - L3 LINE CR1 -1055 522 371 180 143 0 122 chr9 2768034 2768083 -115094544 + L2 LINE L2 3261 3303 -10 2182 111 20 3 chr9 2769251 2769549 -115093078 + AluSx SINE Alu 1 303 -9 603 293 102 5 chr9 2769554 2769759 -115092868 + MIR SINE MIR 28 252 -10 547 281 207 5 chr9 2769956 2770159 -115092468 + MIR SINE MIR 2 245 -17 396 312 28 7 chr9 2770422 2770563 -115092064 - MER117 DNA MER1_type -53 144 1 2234 116 0 13 chr9 2770659 2770970 -115091657 - AluSx SINE Alu -5 307 1 1958 130 14 0 chr9 2771360 2771645 -115090982 - AluSq SINE Alu -7 306 18 574 298 36 16 chr9 2771796 2772105 -115090522 + L1ME LINE L1 5316 5558 -604 2636 82 3 72 chr9 2772136 2772527 -115090100 - THE1B LTR MaLR 0 364 1 482 220 20 0 chr9 2772566 2772666 -115089961 - MER94 DNA DNA 0 134 33 25 0 0 0 chr9 2773078 2773103 -115089524 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr9 2773155 2773179 -115089448 + AT_rich Low_complexity Low_complexity 1 24 0 240 86 0 0 chr9 2774037 2774072 -115088555 + (TG)n Simple_repeat Simple_repeat 1 35 0 264 59 0 0 chr9 2774072 2774106 -115088521 + (GA)n Simple_repeat Simple_repeat 2 35 0 825 180 33 27 chr9 2774276 2774450 -115088177 + MLT1H LTR MaLR 1 175 -374 3185 138 66 22 chr9 2774450 2775039 -115087588 - MER41B LTR ERV1 0 635 21 228 91 0 0 chr9 2775036 2775069 -115087558 - MER41A LTR ERV1 -496 58 26 * 483 231 104 136 chr9 2775080 2775426 -115087201 + MLT1H LTR MaLR 176 510 -39 755 133 103 42 chr9 2776523 2776688 -115085939 + L1PA16 LINE L1 5992 6166 0 21 57 0 0 chr9 2776797 2776832 -115085795 + AT_rich Low_complexity Low_complexity 1 35 0 228 299 219 12 chr9 2776963 2777127 -115085500 + MIR SINE MIR 59 256 -6 346 217 29 0 chr9 2778003 2778072 -115084555 - MER5B DNA MER1_type 0 178 108 11507 118 32 81 chr9 2778076 2784404 -115078223 + L1PA8 LINE L1 12 6172 0 338 191 0 0 chr9 2784424 2784492 -115078135 + L1M4 LINE L1 4684 4751 -1395 372 22 0 0 chr9 2784494 2784539 -115078088 - LTR7 LTR ERV1 -405 45 1 3263 107 6 28 chr9 2784539 2785072 -115077555 - HERVH LTR ERV1 0 7713 7193 2840 234 4 4 chr9 2785061 2785762 -115076865 - HERVH LTR ERV1 -2699 5014 4314 * 15751 185 16 28 chr9 2785826 2789918 -115072709 - HERVH LTR ERV1 -3430 5148 1 1896 162 60 21 chr9 2789918 2790351 -115072276 - LTR7 LTR ERV1 0 450 1 9006 147 57 82 chr9 2790405 2791909 -115070718 + L1MC3 LINE L1 5653 7194 -591 244 294 11 22 chr9 2791909 2792001 -115070626 + MLT1F1 LTR MaLR 35 125 -442 9006 147 57 82 chr9 2792001 2792573 -115070054 + L1MC3 LINE L1 7194 7766 -19 2658 20 0 0 chr9 2792573 2792873 -115069754 - AluY SINE Alu -11 300 1 9006 147 57 82 chr9 2792873 2792893 -115069734 + L1MC3 LINE L1 7766 7785 0 506 233 15 3 chr9 2792897 2793016 -115069611 - MER5B DNA MER1_type -57 126 12 266 240 10 80 chr9 2793945 2794045 -115068582 - L2 LINE L2 0 3313 3221 1096 202 5 14 chr9 2794124 2794342 -115068285 + MER20 DNA MER1_type 1 216 -3 982 181 62 0 chr9 2794844 2795037 -115067590 - MER3 DNA MER1_type -4 205 1 2128 249 34 39 chr9 2797026 2797752 -115064875 + MER21B LTR ERV1 13 735 -128 2391 94 71 0 chr9 2797762 2798112 -115064515 + MER51B LTR ERV1 3 377 0 233 236 55 18 chr9 2798149 2798204 -115064423 - L2 LINE L2 -60 3212 3156 457 287 123 20 chr9 2798241 2798436 -115064191 + LTR33 LTR ERVL 1 215 -306 277 188 77 60 chr9 2798583 2798700 -115063927 + LTR33 LTR ERVL 403 521 0 407 319 60 44 chr9 2799636 2799735 -115062892 - MIR3 SINE MIR -21 187 82 2095 140 10 75 chr9 2799735 2800150 -115062477 - MLT1B LTR MaLR 0 390 3 407 319 60 44 chr9 2800150 2800232 -115062395 - MIR3 SINE MIR -126 82 3 202 306 32 0 chr9 2801019 2801081 -115061546 - MIR SINE MIR -63 145 82 481 291 14 0 chr9 2801370 2801518 -115061109 - MER103 DNA DNA -7 159 10 898 270 70 59 chr9 2802545 2803090 -115059537 + MLT1L LTR MaLR 21 467 -44 645 322 153 8 chr9 2803375 2803729 -115058898 - L2 LINE L2 -8 3305 2901 254 297 168 0 chr9 2804634 2804735 -115057892 - MIR3 SINE MIR -4 204 87 376 243 168 34 chr9 2804861 2805036 -115057591 - MIR SINE MIR -30 232 31 490 314 168 9 chr9 2805345 2805565 -115057062 + MIR SINE MIR 2 256 -6 2265 97 3 3 chr9 2805717 2806015 -115056612 - AluSp SINE Alu -15 298 1 424 278 133 17 chr9 2807271 2807512 -115055115 - L1ME3A LINE L1 -215 5947 5679 2132 124 0 0 chr9 2807685 2808015 -115054612 - AluSx SINE Alu 0 330 1 1613 170 0 56 chr9 2808021 2808327 -115054300 - AluJb SINE Alu -17 295 7 326 196 131 9 chr9 2808508 2808615 -115054012 - L1MEd LINE L1 -5998 121 2 216 323 46 39 chr9 2809707 2809837 -115052790 + L2 LINE L2 2716 2846 -468 243 0 0 0 chr9 2809894 2809921 -115052706 + (A)n Simple_repeat Simple_repeat 1 27 0 373 256 183 0 chr9 2810463 2810600 -115052027 + MIR SINE MIR 57 218 -44 217 328 101 25 chr9 2810728 2810847 -115051780 - L2 LINE L2 -9 3263 3136 752 219 17 52 chr9 2810874 2811107 -115051520 + MER33 DNA MER1_type 1 225 -99 1043 61 0 0 chr9 2811107 2811238 -115051389 + AluY SINE Alu 181 311 0 252 0 0 0 chr9 2811242 2811270 -115051357 + (TA)n Simple_repeat Simple_repeat 2 29 0 361 124 45 34 chr9 2811277 2811366 -115051261 + MER33 DNA MER1_type 259 348 -15 1849 130 22 7 chr9 2811371 2811648 -115050979 - AluSq SINE Alu -19 294 14 269 300 148 51 chr9 2811712 2811969 -115050658 - L2 LINE L2 -167 3105 2824 228 158 329 13 chr9 2812642 2812718 -115049909 + MER5A DNA MER1_type 59 158 -31 * 446 212 30 10 chr9 2812652 2812751 -115049876 - MER5A DNA MER1_type -80 109 9 * 700 333 144 19 chr9 2812744 2813384 -115049243 - L3 LINE CR1 -16 1561 842 552 287 83 47 chr9 2813565 2814035 -115048592 - L1ME4a LINE L1 -282 5839 5353 2504 100 3 11 chr9 2814231 2814612 -115048015 - L1MA2 LINE L1 0 6304 5927 268 91 121 76 chr9 2814706 2814772 -115047855 + MADE1 DNA Mariner 12 80 0 405 279 22 8 chr9 2814837 2814851 -115047776 - L1ME4a LINE L1 -1968 4178 4166 2276 95 0 10 chr9 2814851 2815156 -115047471 - AluY SINE Alu -9 302 1 405 279 22 8 chr9 2815156 2815296 -115047331 - L1ME4a LINE L1 -1980 4166 4023 744 248 8 33 chr9 2815549 2815791 -115046836 + L1MB7 LINE L1 5948 6183 -1 1257 254 45 2 chr9 2815793 2816191 -115046436 - L1MC4 LINE L1 -384 7658 7244 1815 268 14 24 chr9 2816192 2816818 -115045809 - L1MC4 LINE L1 -961 7081 6462 21 36 0 0 chr9 2818031 2818059 -115044568 + AT_rich Low_complexity Low_complexity 1 28 0 350 316 0 10 chr9 2818554 2818652 -115043975 - L2 LINE L2 0 3313 3217 687 247 86 0 chr9 2818653 2818839 -115043788 + MER63A DNA MER1_type 9 210 0 1158 326 59 52 chr9 2818839 2819806 -115042821 - L2 LINE L2 -93 3179 2204 254 294 0 0 chr9 2820011 2820079 -115042548 + MIR SINE MIR 183 250 -12 338 157 12 0 chr9 2820081 2820164 -115042463 + CT-rich Low_complexity Low_complexity 2 85 0 222 125 25 0 chr9 2820277 2820317 -115042310 + (TG)n Simple_repeat Simple_repeat 1 41 0 1465 247 99 53 chr9 2820724 2821063 -115041564 - MLT1G1 LTR MaLR -15 580 258 1847 146 27 7 chr9 2821063 2821364 -115041263 - AluSx SINE Alu -5 307 1 640 246 0 0 chr9 2821370 2821492 -115041135 - FLAM_A SINE Alu -10 123 2 1465 247 99 53 chr9 2821492 2821691 -115040936 - MLT1G1 LTR MaLR -341 254 10 2537 53 3 0 chr9 2823104 2823408 -115039219 + AluYa5 SINE Alu 2 306 -5 31 68 0 0 chr9 2823807 2823866 -115038761 + AT_rich Low_complexity Low_complexity 1 59 0 237 276 150 0 chr9 2824236 2824363 -115038264 + MER117 DNA MER1_type 51 196 -1 372 270 63 9 chr9 2825907 2826018 -115036609 + MIR SINE MIR 8 124 -138 385 273 113 92 chr9 2826023 2826316 -115036311 - L2 LINE L2 0 3272 2974 245 281 177 0 chr9 2826313 2826409 -115036218 + MIR SINE MIR 115 227 -35 * 1317 278 55 26 chr9 2826693 2827147 -115035480 + LTR16C LTR ERVL 1 467 -24 970 294 71 34 chr9 2827157 2827664 -115034963 + LTR67 LTR ERVL 23 548 -9 601 270 82 0 chr9 2827670 2827903 -115034724 - LTR33A LTR ERVL 0 523 272 204 315 121 60 chr9 2827965 2828114 -115034513 - L2 LINE L2 -1141 2173 2016 3057 161 21 3 chr9 2828658 2829237 -115033390 - L1MA8 LINE L1 -22 6269 5681 320 327 69 25 chr9 2829242 2829401 -115033226 + MIR SINE MIR 20 185 -77 186 43 0 0 chr9 2829514 2829537 -115033090 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr9 2830590 2830611 -115032016 + AT_rich Low_complexity Low_complexity 1 21 0 396 255 102 10 chr9 2831106 2831302 -115031325 - HAL1 LINE L1 -296 2211 1998 749 243 78 19 chr9 2831328 2831534 -115031093 - MIR SINE MIR -31 231 14 615 265 90 13 chr9 2831650 2831884 -115030743 - HAL1 LINE L1 -636 1871 1620 1155 248 110 63 chr9 2831903 2832676 -115029951 - HAL1 LINE L1 -1009 1498 690 349 391 14 0 chr9 2833598 2833736 -115028891 - MIR SINE MIR -98 164 25 435 309 33 48 chr9 2833913 2834123 -115028504 + L1MEd LINE L1 122 328 -5791 741 182 0 0 chr9 2834253 2834374 -115028253 + AluJo/FLAM SINE Alu 1 121 -191 1431 186 11 22 chr9 2834374 2834643 -115027984 + AluJo SINE Alu 27 292 -20 932 279 36 68 chr9 2834654 2835393 -115027234 + L1MEd LINE L1 494 1209 -4910 427 292 64 68 chr9 2835409 2835628 -115026999 + HAL1 LINE L1 1301 1518 -989 231 279 31 54 chr9 2836264 2836393 -115026234 + L1ME LINE L1 5610 5735 -386 417 281 136 28 chr9 2836579 2836875 -115025752 + L1ME4a LINE L1 5335 5689 -432 201 74 0 0 chr9 2836875 2836902 -115025725 + (TG)n Simple_repeat Simple_repeat 2 28 0 417 281 136 28 chr9 2836902 2837029 -115025598 + L1ME4a LINE L1 5689 5801 -320 30 59 0 0 chr9 2837059 2837110 -115025517 + AT_rich Low_complexity Low_complexity 1 51 0 243 225 78 47 chr9 2837136 2837265 -115025362 + L1ME4a LINE L1 5977 6109 -12 218 175 0 18 chr9 2837379 2837436 -115025191 + GA-rich Low_complexity Low_complexity 2 57 0 24 77 0 0 chr9 2837543 2837595 -115025032 + AT_rich Low_complexity Low_complexity 1 52 0 430 308 127 60 chr9 2838425 2838841 -115023786 + L2 LINE L2 2804 3247 -25 1719 243 94 8 chr9 2838843 2839354 -115023273 + L1ME3A LINE L1 5613 6167 -3 211 338 12 12 chr9 2840589 2840669 -115021958 + L2 LINE L2 2970 3049 -223 647 203 49 7 chr9 2840784 2840927 -115021700 - MIR SINE MIR -3 259 111 273 348 71 7 chr9 2842306 2842447 -115020180 + L2 LINE L2 3116 3265 -7 5214 175 17 6 chr9 2843522 2844585 -115018042 - L1 LINE L1 -1894 4252 3178 305 291 101 20 chr9 2844586 2844734 -115017893 - L2 LINE L2 -274 2998 2839 1810 101 42 32 chr9 2844787 2845095 -115017532 + L1MA3 LINE L1 5994 6304 -1 269 284 216 61 chr9 2845119 2845397 -115017230 + L2 LINE L2 2988 3308 -5 2212 90 0 0 chr9 2845416 2845717 -115016910 + L1PB1 LINE L1 5851 6151 0 427 286 138 22 chr9 2846931 2847162 -115015465 - MIR SINE MIR 0 262 5 847 140 25 13 chr9 2848838 2848995 -115013632 + L1M4b LINE L1 -520 4294966934 -6690 1365 216 28 21 chr9 2849000 2849389 -115013238 + L1 LINE L1 4848 5239 -907 297 54 0 0 chr9 2849390 2849427 -115013200 - MER61A LTR ERV1 0 343 307 337 57 0 38 chr9 2849427 2849480 -115013147 - MLT2A2 LTR ERVL 0 453 403 375 270 0 0 chr9 2849508 2849597 -115013030 - L1MC4 LINE L1 -1340 6702 6614 339 216 45 23 chr9 2849579 2849667 -115012960 + L1MC4 LINE L1 6614 6703 -1339 * 2924 81 0 12 chr9 2849669 2849686 -115012941 - MLT2A1 LTR ERVL -40 404 388 189 107 0 0 chr9 2849686 2849714 -115012913 + (TATATG)n Simple_repeat Simple_repeat 1 28 0 2924 81 0 12 chr9 2849714 2850105 -115012522 - MLT2A1 LTR ERVL -56 388 1 1531 140 29 57 chr9 2850195 2850545 -115012082 + L1MA9 LINE L1 5738 6077 -235 528 214 14 4 chr9 2850551 2850684 -115011943 + L1MA9 LINE L1 6180 6334 0 4612 239 52 11 chr9 2850692 2851836 -115010791 + L1M4b LINE L1 -372 818 -5510 281 230 63 0 chr9 2851844 2851961 -115010666 + L1M4b LINE L1 1806 1886 -4540 21379 37 12 10 chr9 2852226 2855709 -115006918 - L1PA4 LINE L1 0 6155 2667 5559 109 6 13 chr9 2855772 2856632 -115005995 + L1PA10 LINE L1 5305 6158 -10 271 173 245 43 chr9 2856655 2856671 -115005956 + L1MB8 LINE L1 5179 5190 -956 1900 181 33 33 chr9 2856671 2857035 -115005592 - THE1B LTR MaLR 0 364 1 271 173 245 43 chr9 2857035 2857157 -115005470 + L1MB8 LINE L1 5190 5345 -801 * 13454 147 37 21 chr9 2857156 2857505 -115005122 + L1PBa LINE L1 3 345 -6518 1800 94 4 33 chr9 2857505 2857750 -115004877 + AluSx SINE Alu 50 287 -25 203 0 0 36 chr9 2857754 2857782 -115004845 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 13454 147 37 21 chr9 2857782 2859939 -115002688 + L1PBa LINE L1 347 2552 -4311 12078 186 49 14 chr9 2859951 2866361 -114996266 + L1PB1 LINE L1 1 6864 -3 25 0 0 0 chr9 2866361 2866386 -114996241 + AT_rich Low_complexity Low_complexity 1 25 0 3619 179 28 43 chr9 2866393 2866538 -114996089 + L1MB8 LINE L1 5338 5484 -694 2166 122 0 3 chr9 2866538 2866832 -114995795 - AluSx SINE Alu -19 293 1 3619 179 28 43 chr9 2866832 2867537 -114995090 + L1MB8 LINE L1 5484 6175 -3 5862 49 3 0 chr9 2867757 2868474 -114994153 + L1PA7 LINE L1 5435 6153 -1 830 356 30 8 chr9 2868642 2869013 -114993614 - LTR16C LTR ERVL -11 480 102 340 236 62 35 chr9 2869733 2869877 -114992750 + MER103 DNA DNA 17 164 -2 538 281 43 0 chr9 2869942 2870081 -114992546 - MIR3 SINE MIR -51 157 13 391 239 141 33 chr9 2870442 2870626 -114992001 + MLT1J2 LTR MaLR 244 447 -3 563 337 80 52 chr9 2870887 2871581 -114991046 + L2 LINE L2 2550 3250 -22 210 118 0 0 chr9 2871813 2871847 -114990780 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 277 323 42 0 chr9 2871946 2872042 -114990585 + MIR SINE MIR 16 115 -147 435 286 28 45 chr9 2872225 2872403 -114990224 - MIR SINE MIR -84 178 4 274 351 105 12 chr9 2872866 2873037 -114989590 - MIR3 SINE MIR -3 205 19 196 286 44 33 chr9 2874519 2874610 -114988017 + MIR SINE MIR 2 93 -169 182 150 25 0 chr9 2874758 2874798 -114987829 + (CATAT)n Simple_repeat Simple_repeat 3 43 0 1130 284 94 23 chr9 2875473 2876047 -114986580 + MLT1L LTR MaLR 1 615 0 224 345 12 12 chr9 2876091 2876175 -114986452 + L2 LINE L2 3180 3263 -9 392 355 26 19 chr9 2876514 2876669 -114985958 - L2 LINE L2 -1 3271 3116 2020 142 10 0 chr9 2877057 2877359 -114985268 + AluSx SINE Alu 1 305 -7 370 291 82 0 chr9 2877704 2877814 -114984813 + MIR SINE MIR 29 147 -115 1913 163 29 27 chr9 2877839 2878213 -114984414 + THE1C LTR MaLR 1 375 0 320 202 24 12 chr9 2878358 2878442 -114984185 + L1ME3A LINE L1 6077 6161 -9 23 0 0 0 chr9 2878587 2878610 -114984017 + AT_rich Low_complexity Low_complexity 1 23 0 340 264 90 0 chr9 2878738 2878882 -114983745 - L1ME4a LINE L1 -289 5832 5676 369 0 0 0 chr9 2879738 2879779 -114982848 + (CA)n Simple_repeat Simple_repeat 1 41 0 265 330 92 63 chr9 2881350 2881698 -114980929 + L2 LINE L2 2362 2719 -595 1489 217 28 12 chr9 2882011 2882370 -114980257 + MLT1A1 LTR MaLR 1 365 0 367 115 297 40 chr9 2882371 2882519 -114980108 - MER53 DNA DNA -2 187 2 384 283 83 49 chr9 2882615 2882820 -114979807 + HAL1 LINE L1 1 212 -2295 246 332 50 50 chr9 2882940 2883160 -114979467 + HAL1 LINE L1 410 629 -1878 834 250 126 57 chr9 2883235 2883778 -114978849 + HAL1 LINE L1 780 1381 -1126 537 135 21 0 chr9 2883778 2883874 -114978753 + L1MB3 LINE L1 6083 6180 -3 834 250 126 57 chr9 2883874 2884011 -114978616 + HAL1 LINE L1 1381 1507 -1000 456 175 0 0 chr9 2884028 2884108 -114978519 + MADE1 DNA Mariner 1 80 0 1872 146 24 3 chr9 2884149 2884444 -114978183 + AluSx SINE Alu 3 303 -9 196 269 115 0 chr9 2884714 2884766 -114977861 - L2 LINE L2 -1 3271 3214 2128 152 0 15 chr9 2884774 2885116 -114977511 + MER1B DNA MER1_type 1 337 0 203 325 77 41 chr9 2885259 2885453 -114977174 - L2 LINE L2 -162 3110 2910 207 384 139 17 chr9 2885649 2885821 -114976806 + L2 LINE L2 3076 3268 -4 216 274 96 14 chr9 2888110 2888183 -114974444 - L2 LINE L2 -5 3267 3189 950 307 56 14 chr9 2888199 2888554 -114974073 - MLT1I LTR MaLR 0 409 40 22 0 0 0 chr9 2888989 2889011 -114973616 + AT_rich Low_complexity Low_complexity 1 22 0 311 299 0 21 chr9 2889064 2889161 -114973466 + L1MDa LINE L1 2459 2553 -3987 840 163 0 7 chr9 2889162 2889297 -114973330 + AluJo SINE Alu 1 134 -178 536 225 45 64 chr9 2889368 2889595 -114973032 + L1MDa LINE L1 2637 2860 -3680 2222 91 3 0 chr9 2889595 2889882 -114972745 + AluSp SINE Alu 1 288 -25 536 225 45 64 chr9 2889882 2889921 -114972706 + L1MDa LINE L1 2860 2898 -3642 3001 144 44 94 chr9 2889924 2890680 -114971947 + L1MB2 LINE L1 5449 6166 -5 834 272 121 49 chr9 2890739 2891273 -114971354 - MLT1F1 LTR MaLR -1 566 1 705 266 77 29 chr9 2891275 2891663 -114970964 + L1MDa LINE L1 2952 3363 -3177 2121 88 4 0 chr9 2891663 2891936 -114970691 + AluY SINE Alu 34 307 -4 705 266 77 29 chr9 2891936 2891964 -114970663 + L1MDa LINE L1 3363 3388 -3152 5644 180 161 28 chr9 2892185 2893749 -114968878 - MER52A LTR ERV1 0 1755 6 2879 249 58 43 chr9 2894043 2896328 -114966299 - L1 LINE L1 -3534 2816 830 1999 150 10 0 chr9 2896351 2896645 -114965982 + AluSx SINE Alu 1 297 -15 21629 100 9 5 chr9 2896647 2902312 -114960315 + L1PA7 LINE L1 748 6469 0 931 278 116 10 chr9 2902540 2902936 -114959691 + HAL1 LINE L1 1530 1967 -540 1101 284 149 15 chr9 2903627 2904163 -114958464 - L1 LINE L1 -5672 609 2 467 269 52 84 chr9 2904412 2905392 -114957235 + L1MEd LINE L1 648 1692 -884 893 241 67 15 chr9 2905606 2906008 -114956619 - L1M4 LINE L1 -2751 3395 2973 600 263 32 21 chr9 2906481 2906840 -114955787 + L1MEd LINE L1 2113 2437 -3778 3153 100 0 4 chr9 2906851 2907303 -114955324 - MER9 LTR ERVK -61 450 1 1542 246 66 26 chr9 2907464 2908203 -114954424 + L1MEd LINE L1 2704 3472 -2743 192 304 18 0 chr9 2908545 2908601 -114954026 + L2 LINE L2 3214 3270 -2 1349 214 121 6 chr9 2908708 2909063 -114953564 + MSTD LTR MaLR 1 396 0 2402 124 5 22 chr9 2911120 2911490 -114951137 + THE1B LTR MaLR 1 364 0 230 356 0 26 chr9 2912133 2912248 -114950379 - L2 LINE L2 -179 3093 2982 2276 94 0 0 chr9 2913666 2913954 -114948673 - AluSg SINE Alu -22 288 1 218 319 56 14 chr9 2914037 2914109 -114948518 - L2 LINE L2 -44 3228 3154 189 292 157 0 chr9 2914138 2914227 -114948400 + L2 LINE L2 3200 3302 -11 426 238 65 38 chr9 2914738 2914923 -114947704 + L1ME4a LINE L1 5929 6118 -3 299 222 52 30 chr9 2915486 2915621 -114947006 + L1ME4a LINE L1 5984 6121 0 2353 137 72 10 chr9 2916353 2916756 -114945871 + MSTA LTR MaLR 1 428 0 224 234 0 0 chr9 2917053 2917100 -114945527 + MER91A DNA MER1_type 2 48 -148 1741 194 85 8 chr9 2917194 2917595 -114945032 + MLT1C LTR MaLR 34 465 -2 225 224 0 52 chr9 2918919 2918977 -114943650 + MIR SINE MIR 99 153 -55 199 54 54 0 chr9 2919117 2919154 -114943473 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 517 197 230 0 chr9 2919158 2919310 -114943317 + MER5A DNA MER1_type 3 189 0 706 226 65 0 chr9 2919814 2919982 -114942645 - MER20 DNA MER1_type 0 219 41 2576 134 25 2 chr9 2919987 2920402 -114942225 - MSTB LTR MaLR 0 414 2 1479 221 25 43 chr9 2920708 2921152 -114941475 - LTR40b LTR ERVL 0 462 27 211 336 159 0 chr9 2921163 2921270 -114941357 + L2 LINE L2 3186 3309 -4 2142 195 86 13 chr9 2921352 2921819 -114940808 - MLT1D LTR MaLR -2 503 3 232 322 226 0 chr9 2922242 2922419 -114940208 - MIR SINE MIR -18 244 28 998 235 9 0 chr9 2922528 2922745 -114939882 + MER58A DNA MER1_type 1 219 -5 2016 183 113 33 chr9 2922745 2923185 -114939442 + MLT2B1 LTR ERVL 1 484 -36 419 35 18 0 chr9 2923185 2923242 -114939385 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 2016 183 113 33 chr9 2923242 2923281 -114939346 + MLT2B1 LTR ERVL 484 518 -2 315 303 0 55 chr9 2923292 2923401 -114939226 - L1ME3A LINE L1 -105 6065 5963 395 260 1 9 chr9 2923498 2923631 -114938996 - L1ME3A LINE L1 -469 5693 5561 255 103 0 0 chr9 2923631 2923670 -114938957 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5236 154 31 23 chr9 2923670 2923919 -114938708 - L1MA5A LINE L1 -9 6288 6042 2034 151 15 0 chr9 2923919 2924250 -114938377 + MER1B DNA MER1_type 2 337 0 5236 154 31 23 chr9 2924250 2925797 -114936830 - L1MA5A LINE L1 -255 6042 4474 23 0 0 0 chr9 2925797 2925820 -114936807 + AT_rich Low_complexity Low_complexity 1 23 0 4554 144 5 1 chr9 2925820 2926588 -114936039 - L1PA13 LINE L1 -6 6157 5387 * 5751 169 8 6 chr9 2926582 2927666 -114934961 - L1PA13 LINE L1 -1315 4831 3745 9179 223 26 13 chr9 2927666 2930469 -114932158 - L1 LINE L1 -1643 5145 2349 24 32 0 0 chr9 2930475 2930506 -114932121 + AT_rich Low_complexity Low_complexity 1 31 0 10530 193 28 52 chr9 2930522 2932850 -114929777 - L1 LINE L1 -4514 2275 3 1842 257 120 45 chr9 2932890 2934672 -114927955 - L1MC/D LINE L1 -707 5444 3632 21 36 0 0 chr9 2934973 2935001 -114927626 + AT_rich Low_complexity Low_complexity 1 28 0 802 263 64 57 chr9 2935027 2935765 -114926862 - L1MC/D LINE L1 -2630 3516 2774 24 32 0 0 chr9 2935843 2935874 -114926753 + AT_rich Low_complexity Low_complexity 1 31 0 212 143 48 0 chr9 2935928 2935970 -114926657 + (TATG)n Simple_repeat Simple_repeat 4 47 0 312 304 7 22 chr9 2936823 2936961 -114925666 + CT-rich Low_complexity Low_complexity 3 138 0 583 226 0 51 chr9 2937391 2937528 -114925099 - FLAM_C SINE Alu -3 130 1 2297 116 0 3 chr9 2937846 2938149 -114924478 - AluSq SINE Alu -11 302 1 658 282 39 83 chr9 2938417 2938900 -114923727 + MLT1J LTR MaLR 23 484 -27 705 243 53 37 chr9 2938936 2939179 -114923448 + MIR SINE MIR 14 260 -2 207 0 0 0 chr9 2940453 2940476 -114922151 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1069 152 0 6 chr9 2941394 2941559 -114921068 + AluSg/x SINE Alu 125 288 -24 1376 238 42 118 chr9 2942783 2942957 -114919670 + MLT1E LTR MaLR 5 191 -402 2408 98 3 0 chr9 2942957 2943264 -114919363 + AluSg SINE Alu 1 308 -2 1376 238 42 118 chr9 2943264 2943714 -114918913 + MLT1E LTR MaLR 191 581 -12 802 147 84 101 chr9 2946123 2946361 -114916266 + MLT1B LTR MaLR 22 255 -135 2474 180 30 8 chr9 2946749 2947243 -114915384 + MLT1D LTR MaLR 1 505 0 734 133 0 8 chr9 2947253 2947381 -114915246 + (TCCCC)n Simple_repeat Simple_repeat 3 129 0 370 308 0 0 chr9 2947774 2947865 -114914762 - MIR SINE MIR -88 174 84 310 232 62 40 chr9 2948140 2948366 -114914261 + L1MC/D LINE L1 5600 5829 -303 471 306 100 58 chr9 2948527 2948926 -114913701 + L1MC/D LINE L1 3925 4340 -1806 42 57 0 0 chr9 2949016 2949086 -114913541 + AT_rich Low_complexity Low_complexity 1 70 0 425 308 47 65 chr9 2949173 2949911 -114912716 + L1MC/D LINE L1 4549 5277 -869 1105 279 69 42 chr9 2949921 2950369 -114912258 + L1MC/D LINE L1 5318 5777 -2031 22 35 0 0 chr9 2950369 2950398 -114912229 + AT_rich Low_complexity Low_complexity 1 29 0 969 193 0 0 chr9 2950399 2950560 -114912067 + MSTB LTR MaLR 1 161 -265 * 2366 184 92 2 chr9 2950551 2950987 -114911640 - LTR36 LTR ERV1 -40 571 97 4888 152 38 7 chr9 2951004 2951811 -114910816 - MSTA-int LTR MaLR -819 832 1 2436 174 48 17 chr9 2951811 2952226 -114910401 - MSTA LTR MaLR 0 428 1 354 111 122 11 chr9 2952227 2952317 -114910310 - LTR36 LTR ERV1 -511 100 1 893 167 0 0 chr9 2952317 2952455 -114910172 + MSTB LTR MaLR 287 424 -2 4745 204 47 6 chr9 2952466 2953410 -114909217 + MSTB-int LTR MaLR 5 986 -665 191 325 84 0 chr9 2954045 2954128 -114908499 - L2 LINE L2 0 3272 3183 231 304 72 16 chr9 2955609 2955734 -114906893 + L1ME LINE L1 324 455 -5615 382 224 64 55 chr9 2955803 2956023 -114906604 + L1ME LINE L1 446 662 -5421 1403 130 5 0 chr9 2956052 2956252 -114906375 + AluSx SINE Alu 1 201 -111 884 256 0 0 chr9 2956260 2956432 -114906195 - MER58A DNA MER1_type -52 172 1 2298 350 57 25 chr9 2956486 2958550 -114904077 - ERVL LTR ERVL -1151 4613 2453 413 341 24 54 chr9 2958545 2959012 -114903615 - ERVL LTR ERVL -3829 1167 728 * 182 345 136 9 chr9 2960116 2960226 -114902401 - L2 LINE L2 -20 3293 3170 2643 173 22 7 chr9 2960317 2960763 -114901864 + LTR32 LTR ERVL 19 471 0 703 293 43 17 chr9 2961030 2961389 -114901238 - MLT1I LTR MaLR 0 409 2 471 285 36 112 chr9 2961412 2961717 -114900910 + L2 LINE L2 2990 3271 -1 503 210 145 22 chr9 2962459 2962622 -114900005 + MER5A DNA MER1_type 4 189 0 246 297 47 27 chr9 2963483 2963631 -114898996 + L2 LINE L2 1597 1747 -1567 182 364 119 36 chr9 2963845 2964257 -114898370 + L2 LINE L2 2822 3267 -5 1929 135 0 14 chr9 2965333 2965647 -114896980 - AluSx SINE Alu 0 310 1 21 82 0 0 chr9 2966362 2966411 -114896216 + AT_rich Low_complexity Low_complexity 1 49 0 27 49 0 0 chr9 2966447 2966488 -114896139 + AT_rich Low_complexity Low_complexity 1 41 0 23 33 0 0 chr9 2966761 2966791 -114895836 + AT_rich Low_complexity Low_complexity 1 30 0 314 242 31 47 chr9 2967509 2967612 -114895015 - MIR SINE MIR -108 100 3 * 492 195 146 8 chr9 2967612 2967728 -114894899 - MER5A DNA MER1_type -15 174 42 2236 91 20 14 chr9 2967978 2968275 -114894352 - AluSq SINE Alu -14 299 1 4777 210 48 10 chr9 2968334 2968533 -114894094 - MER45B DNA AcHobo -548 1033 843 2338 88 0 0 chr9 2968533 2968828 -114893799 - AluY SINE Alu -16 295 1 4777 210 48 10 chr9 2968828 2969620 -114893007 - MER45B DNA AcHobo -738 843 4 3152 95 27 0 chr9 2969743 2970154 -114892473 + L1PA10 LINE L1 5743 6164 -4 2138 133 0 0 chr9 2971339 2971633 -114890994 - AluSg SINE Alu -16 294 1 469 310 62 31 chr9 2971677 2971903 -114890724 - L1MC/D LINE L1 -2034 5774 5542 2212 181 0 3 chr9 2972126 2972491 -114890136 + MLT2D LTR ERVL 1 364 -50 633 171 0 0 chr9 2972491 2972608 -114890019 + (TCCA)n Simple_repeat Simple_repeat 1 117 0 279 117 0 83 chr9 2972608 2972668 -114889959 + MLT2D LTR ERVL 343 397 0 368 273 58 65 chr9 2972709 2972984 -114889643 + L1ME LINE L1 3951 4223 -1923 254 311 56 11 chr9 2973351 2973441 -114889186 - MIR SINE MIR -95 113 20 956 251 4 30 chr9 2973465 2973696 -114888931 - MIR SINE MIR -1 261 37 21 0 0 0 chr9 2973777 2973798 -114888829 + AT_rich Low_complexity Low_complexity 1 21 0 2295 78 0 0 chr9 2973798 2974104 -114888523 + AluY SINE Alu 1 306 0 225 288 45 15 chr9 2974310 2974376 -114888251 + MIR SINE MIR 20 87 -175 694 265 26 48 chr9 2974500 2974730 -114887897 + MIR SINE MIR 36 260 -2 210 71 0 0 chr9 2975574 2975602 -114887025 + (TG)n Simple_repeat Simple_repeat 1 28 0 662 272 56 75 chr9 2975912 2976592 -114886035 + L1ME LINE L1 5148 5819 -302 1381 205 4 4 chr9 2976652 2976915 -114885712 + AluJo SINE Alu 32 294 -18 398 151 27 0 chr9 2977020 2977093 -114885534 + MER116 DNA Mariner 1 75 -5 21 0 0 0 chr9 2977094 2977115 -114885512 + AT_rich Low_complexity Low_complexity 1 21 0 421 265 71 109 chr9 2977383 2977621 -114885006 - MIR SINE MIR -25 237 9 783 279 59 41 chr9 2977920 2977996 -114884631 - LTR33 LTR ERVL -28 493 420 1291 162 69 0 chr9 2977996 2978200 -114884427 + MER20 DNA MER1_type 2 219 0 783 279 59 41 chr9 2978200 2978464 -114884163 - LTR33 LTR ERVL -101 420 147 615 159 102 64 chr9 2978634 2978791 -114883836 + MLT1A2 LTR MaLR 1 163 -211 193 204 0 56 chr9 2978853 2978961 -114883666 + CT-rich Low_complexity Low_complexity 6 107 0 908 184 61 31 chr9 2978961 2979157 -114883470 + MLT1A2 LTR MaLR 173 374 0 364 268 274 6 chr9 2980040 2980208 -114882419 + MIR SINE MIR 2 214 -48 205 356 34 17 chr9 2980294 2980412 -114882215 - MIR SINE MIR -106 156 37 427 237 140 77 chr9 2980746 2980874 -114881753 - MIR SINE MIR -9 253 106 2434 72 7 7 chr9 2980874 2981181 -114881446 + AluSc SINE Alu 1 307 -2 427 237 140 77 chr9 2981181 2981259 -114881368 - MIR SINE MIR -156 106 34 4910 156 37 21 chr9 2981811 2983722 -114878905 + L1MA2 LINE L1 15 1895 -5828 2296 113 0 0 chr9 2983722 2984023 -114878604 - AluSg SINE Alu -9 301 1 4910 156 37 21 chr9 2984023 2985051 -114877576 + L1MA2 LINE L1 1895 2906 -4817 2845 100 11 0 chr9 2985051 2985421 -114877206 - THE1C LTR MaLR -1 374 1 11002 123 14 30 chr9 2985421 2987027 -114875600 - THE1C-int LTR MaLR 0 1580 1 2315 131 50 8 chr9 2987027 2987387 -114875240 - THE1C LTR MaLR 0 375 1 4910 156 37 21 chr9 2987387 2988656 -114873971 + L1MA2 LINE L1 2906 4154 -3569 977 62 86 0 chr9 2988656 2988784 -114873843 + MER85 DNA T2_type 1 139 0 4910 156 37 21 chr9 2988784 2991997 -114870630 + L1MA2 LINE L1 4154 7723 0 477 302 189 18 chr9 2992041 2992326 -114870301 - MLT1I LTR MaLR -7 402 69 25 65 0 0 chr9 2992593 2992639 -114869988 + AT_rich Low_complexity Low_complexity 1 46 0 2227 103 3 7 chr9 2992639 2992939 -114869688 - AluSx SINE Alu -13 299 1 273 324 72 0 chr9 2994203 2994314 -114868313 + MIR SINE MIR 71 189 -73 343 241 23 0 chr9 2994770 2994857 -114867770 - MER96 DNA MER1_type? -81 94 6 183 233 83 17 chr9 2995045 2995105 -114867522 + MIR SINE MIR 83 146 -62 287 231 0 26 chr9 2995149 2995227 -114867400 + L1MC5 LINE L1 7836 7911 -50 21 0 0 0 chr9 2995418 2995439 -114867188 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 2996567 2996588 -114866039 + AT_rich Low_complexity Low_complexity 1 21 0 2623 129 3 3 chr9 2996723 2997087 -114865540 + THE1B LTR MaLR 1 364 0 2071 192 117 16 chr9 2997891 2998344 -114864283 + MLT1D LTR MaLR 1 499 -6 2199 102 77 112 chr9 2998573 2999012 -114863615 + MSTA LTR MaLR 1 424 -4 189 313 0 0 chr9 2999033 2999081 -114863546 + MIR SINE MIR 68 115 -93 335 147 147 42 chr9 2999260 2999355 -114863272 + MIR3 SINE MIR 98 202 -6 297 235 0 29 chr9 2999516 2999584 -114863043 - L2 LINE L2 0 3272 3207 774 224 12 0 chr9 3000911 3001072 -114861555 + MER69A DNA AcHobo 1 163 -14 967 158 184 11 chr9 3001334 3001524 -114861103 + MER58A DNA MER1_type 2 224 0 349 296 82 47 chr9 3001736 3001969 -114860658 + L2 LINE L2 3073 3313 0 1990 119 59 54 chr9 3002136 3002507 -114860120 + THE1C LTR MaLR 1 373 -2 894 271 54 7 chr9 3003088 3003418 -114859209 - MLT1H1 LTR MaLR -4 551 171 255 259 99 25 chr9 3006246 3006327 -114856300 - MIR3 SINE MIR -11 197 111 296 216 0 0 chr9 3008661 3008712 -114853915 + L2 LINE L2 3252 3302 -11 443 302 26 0 chr9 3008950 3009066 -114853561 + MIR SINE MIR 64 182 -80 294 239 0 14 chr9 3009115 3009186 -114853441 + HsTC2 DNA Tc2 1827 1896 -2 411 276 178 36 chr9 3009808 3010145 -114852482 + L1MC4a LINE L1 5527 5911 -1897 21 0 0 0 chr9 3010145 3010166 -114852461 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr9 3010332 3010368 -114852259 + AT_rich Low_complexity Low_complexity 1 36 0 4161 172 80 13 chr9 3011470 3012244 -114850383 - LTR1B LTR ERV1 0 826 1 25 0 0 0 chr9 3012540 3012565 -114850062 + AT_rich Low_complexity Low_complexity 1 25 0 2368 172 63 27 chr9 3013075 3013516 -114849111 - LTR32 LTR ERVL 0 471 15 233 282 225 8 chr9 3013526 3013650 -114848977 + MIR SINE MIR 7 154 -63 1983 114 61 10 chr9 3013657 3013954 -114848673 + AluSx SINE Alu 1 312 0 792 287 137 20 chr9 3014707 3015197 -114847430 - L2 LINE L2 -1 3312 2767 333 226 20 88 chr9 3015212 3015314 -114847313 + LTR16A LTR ERVL 358 457 0 818 153 200 12 chr9 3015646 3015816 -114846811 + AluSg/x SINE Alu 71 272 -37 3185 111 12 10 chr9 3016103 3016522 -114846105 + MER4E LTR ERV1 1 503 -263 1890 141 0 0 chr9 3016522 3016798 -114845829 + AluSx SINE Alu 37 312 0 3185 111 12 10 chr9 3016798 3017061 -114845566 + MER4E LTR ERV1 503 764 -2 700 196 14 7 chr9 3017301 3017444 -114845183 - MER5A DNA MER1_type -45 144 1 312 266 124 80 chr9 3017448 3017674 -114844953 + MLT1J LTR MaLR 274 509 -2 3136 71 2 117 chr9 3018513 3019019 -114843608 - LTR7 LTR ERV1 -2 448 1 2304 102 59 13 chr9 3019019 3019392 -114843235 - HERVH LTR ERV1 0 7713 7324 1383 129 18 5 chr9 3019392 3019609 -114843018 - HERVH LTR ERV1 -1894 5819 5600 3100 127 3 2 chr9 3019610 3020230 -114842397 - HERVH LTR ERV1 -2564 5149 4481 * 5989 97 5 2 chr9 3020227 3021079 -114841548 - HERVH LTR ERV1 -3720 3993 3140 * 15227 112 24 27 chr9 3021058 3023805 -114838822 - HERVH LTR ERV1 -4718 2995 126 488 320 136 19 chr9 3024183 3024389 -114838238 + MIR SINE MIR 18 247 -15 728 266 13 42 chr9 3024846 3025083 -114837544 - MIR SINE MIR -3 259 30 188 178 67 67 chr9 3025244 3025289 -114837338 - L2 LINE L2 -86 3186 3142 192 287 35 46 chr9 3026037 3026124 -114836503 - L2 LINE L2 -168 3104 3019 644 256 207 33 chr9 3027051 3027501 -114835126 - HAL1 LINE L1 -24 2483 1956 814 190 42 60 chr9 3027925 3028141 -114834486 + MLT1L LTR MaLR 397 608 -7 1389 250 113 53 chr9 3028258 3028941 -114833686 - HAL1 LINE L1 -689 1818 1095 1118 209 25 4 chr9 3028944 3029179 -114833448 - AluJb SINE Alu -5 307 68 291 274 146 46 chr9 3029200 3029550 -114833077 - HAL1 LINE L1 -1469 1038 654 284 284 210 62 chr9 3029573 3030073 -114832554 - HAL1 LINE L1 -1933 574 1 2315 56 10 3 chr9 3030726 3031014 -114831613 - AluY SINE Alu -21 290 1 240 221 0 73 chr9 3032040 3032071 -114830556 - Tigger5 DNA MER2_type -355 63 38 2023 141 0 0 chr9 3032071 3032355 -114830272 + AluSx SINE Alu 13 296 -16 240 221 0 73 chr9 3032355 3032391 -114830236 - Tigger5 DNA MER2_type -380 38 1 2462 57 7 0 chr9 3032394 3032695 -114829932 - AluY SINE Alu -8 303 1 452 219 67 37 chr9 3032908 3033087 -114829540 + MER104 DNA Tc2 1 182 0 501 224 179 0 chr9 3033274 3033430 -114829197 + MIR SINE MIR 3 186 -76 487 110 0 0 chr9 3034182 3034255 -114828372 - Alu SINE Alu -3 307 235 1938 176 56 8 chr9 3034396 3034771 -114827856 + MER52A LTR ERV1 1361 1753 -2 1749 107 51 4 chr9 3034897 3035150 -114827477 - AluSq SINE Alu -48 265 1 268 393 51 9 chr9 3036096 3036432 -114826195 + HERV16 LTR ERVL 1023 1372 -3624 1081 337 80 18 chr9 3036497 3037176 -114825451 + HERV16 LTR ERVL 1512 2232 -3422 454 271 24 59 chr9 3037197 3037367 -114825260 - MIR SINE MIR -98 164 1 1541 240 272 25 chr9 3038121 3039211 -114823416 - L2 LINE L2 -10 3303 1927 23 0 0 0 chr9 3039479 3039502 -114823125 + AT_rich Low_complexity Low_complexity 1 23 0 908 274 42 33 chr9 3039515 3039851 -114822776 + L1ME LINE L1 5384 5722 -399 180 0 0 0 chr9 3040069 3040089 -114822538 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 2227 267 192 39 chr9 3040206 3041657 -114820970 - L2 LINE L2 -1 3312 1649 857 139 46 13 chr9 3042721 3042872 -114819755 + MER20 DNA MER1_type 2 157 -62 531 281 108 25 chr9 3043873 3044076 -114818551 - MIR SINE MIR 0 262 43 843 249 182 44 chr9 3044374 3044831 -114817796 + HAL1 LINE L1 1230 1749 -758 1122 224 102 63 chr9 3044994 3045189 -114817438 + HAL1 LINE L1 1996 2182 -325 1347 197 66 16 chr9 3045189 3045509 -114817118 + MER46C DNA MER2_type 2 337 -1 1122 224 102 63 chr9 3045509 3045805 -114816822 + HAL1 LINE L1 2182 2506 -1 333 321 15 22 chr9 3046574 3046711 -114815916 + MIR SINE MIR 17 152 -110 933 135 47 57 chr9 3046730 3046922 -114815705 - MER20 DNA MER1_type -7 212 23 358 299 43 37 chr9 3047155 3047319 -114815308 - MIR3 SINE MIR -9 199 35 203 319 14 0 chr9 3048001 3048070 -114814557 + (TATG)n Simple_repeat Simple_repeat 2 71 0 910 189 0 12 chr9 3048176 3048340 -114814287 - AluJ SINE Alu -9 303 142 23 0 0 0 chr9 3048468 3048491 -114814136 + AT_rich Low_complexity Low_complexity 1 23 0 30 27 0 0 chr9 3049654 3049691 -114812936 + AT_rich Low_complexity Low_complexity 1 37 0 1865 147 17 10 chr9 3049696 3049989 -114812638 + AluSx SINE Alu 1 295 -17 289 294 85 7 chr9 3050393 3050546 -114812081 - L1ME LINE L1 -304 5817 5653 266 271 0 0 chr9 3050550 3050620 -114812007 - L1ME LINE L1 -499 5622 5553 473 373 12 12 chr9 3051068 3051237 -114811390 + MIR3 SINE MIR 31 199 -9 419 250 61 14 chr9 3051289 3051437 -114811190 - MER103 DNA DNA -1 165 11 264 254 0 0 chr9 3052065 3052124 -114810503 - MER4-int LTR ERV1 -5442 1156 1098 484 311 24 6 chr9 3052353 3052517 -114810110 + MIR SINE MIR 23 189 -73 330 345 98 13 chr9 3052708 3052943 -114809684 + L1MC/D LINE L1 5547 5801 -2007 824 130 0 61 chr9 3052943 3053074 -114809553 - AluJ SINE Alu -178 134 12 1560 254 96 49 chr9 3053586 3054504 -114808123 + HAL1b LINE L1 123 1083 -265 250 184 145 20 chr9 3054522 3054674 -114807953 + HAL1b LINE L1 1178 1348 0 543 289 55 42 chr9 3055405 3055785 -114806842 + HAL1 LINE L1 1283 1667 -840 2153 112 14 0 chr9 3055931 3056226 -114806401 - AluSx SINE Alu -13 299 1 281 357 31 0 chr9 3056897 3057026 -114805601 - MIR3 SINE MIR -13 195 63 261 0 0 0 chr9 3057355 3057384 -114805243 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 226 372 149 8 chr9 3057902 3058023 -114804604 + L2 LINE L2 3125 3262 -10 868 210 110 0 chr9 3058519 3058809 -114803818 + LTR37A LTR ERV1 105 426 0 207 0 0 0 chr9 3058896 3058919 -114803708 + (TG)n Simple_repeat Simple_repeat 2 24 0 628 284 48 8 chr9 3058919 3059169 -114803458 + MIR SINE MIR 1 260 -2 769 281 53 81 chr9 3059336 3059844 -114802783 + MLT1J LTR MaLR 1 494 -17 1933 149 0 7 chr9 3059948 3060244 -114802383 - AluJo SINE Alu -12 300 7 250 325 36 0 chr9 3060724 3060807 -114801820 - MIR SINE MIR -65 197 112 233 232 10 81 chr9 3062510 3062609 -114800018 - MIR3 SINE MIR -11 197 106 244 373 127 9 chr9 3063501 3063611 -114799016 - L2 LINE L2 -23 3249 3127 560 238 98 12 chr9 3063616 3063780 -114798847 - MIR SINE MIR 0 262 85 2295 178 26 2 chr9 3063781 3064235 -114798392 + MLT1C LTR MaLR 2 466 -1 205 422 0 0 chr9 3064235 3064318 -114798309 - MIR SINE MIR -172 90 8 1268 165 9 0 chr9 3064784 3065008 -114797619 - L1PA15 LINE L1 -13 6152 5927 2391 130 16 3 chr9 3065370 3065748 -114796879 + MLT1B LTR MaLR 4 386 -4 230 300 0 0 chr9 3066322 3066382 -114796245 + (TG)n Simple_repeat Simple_repeat 2 61 0 478 241 24 60 chr9 3067848 3068014 -114794613 + LTR45 LTR ERV1 366 525 0 412 319 8 0 chr9 3068684 3068803 -114793824 + L2 LINE L2 3187 3306 -7 259 292 177 0 chr9 3068865 3068961 -114793666 - L2 LINE L2 0 3313 3201 663 215 115 68 chr9 3068982 3069173 -114793454 - MER20 DNA MER1_type -19 200 1 1410 291 76 10 chr9 3069175 3069869 -114792758 - L2 LINE L2 -119 3194 2458 423 292 146 0 chr9 3069873 3070010 -114792617 - MIR SINE MIR -104 158 2 1871 253 144 16 chr9 3070138 3071049 -114791578 + Charlie7 DNA MER1_type 436 1462 -1150 7676 185 83 22 chr9 3071053 3072362 -114790265 + L1M4c LINE L1 19 1246 -5138 1358 183 147 0 chr9 3072362 3072614 -114790013 - AluJb SINE Alu -13 289 1 7676 185 83 22 chr9 3072614 3072648 -114789979 + L1M4c LINE L1 1246 1276 -5108 2078 138 0 0 chr9 3072648 3072977 -114789650 + AluSx SINE Alu 4 312 0 7676 185 83 22 chr9 3072977 3073428 -114789199 + L1M4c LINE L1 1276 1924 -4460 2044 152 0 0 chr9 3073430 3073732 -114788895 - AluSx SINE Alu -10 302 1 572 185 8 0 chr9 3073813 3073932 -114788695 - L1MA9 LINE L1 -4 6308 6189 225 206 0 32 chr9 3073934 3073997 -114788630 + L1M4c LINE L1 2041 2101 -4283 * 1539 236 29 28 chr9 3073986 3074638 -114787989 + L1M4c LINE L1 2835 3487 -2895 501 134 0 0 chr9 3074657 3074739 -114787888 + L1MB3 LINE L1 1386 1467 -4917 317 146 0 0 chr9 3074741 3074789 -114787838 - Alu SINE Alu -15 287 240 2056 147 55 30 chr9 3074801 3075305 -114787322 - MLT2A2 LTR ERVL -22 532 2 3503 219 39 28 chr9 3075308 3076344 -114786283 + L1MB3 LINE L1 3481 4527 -1855 1934 153 88 5 chr9 3076343 3076728 -114785899 + L1MB3 LINE L1 5561 5977 -442 * 893 189 91 103 chr9 3076728 3077086 -114785541 + MLT1A1 LTR MaLR 1 428 -4 2301 161 33 5 chr9 3077086 3077516 -114785111 + L1MB3 LINE L1 5969 6410 -9 2112 234 90 17 chr9 3077527 3078295 -114784332 + Charlie7 DNA MER1_type 1462 2285 -327 294 253 49 31 chr9 3078499 3078518 -114784109 - L1MA10 LINE L1 0 6334 6316 2212 202 102 40 chr9 3078518 3079192 -114783435 - L1ME2 LINE L1 -11 6153 5438 21 0 0 0 chr9 3079436 3079457 -114783170 + AT_rich Low_complexity Low_complexity 1 21 0 2779 185 42 24 chr9 3080461 3081088 -114781539 + LTR9B LTR ERV1 7 644 0 722 206 101 42 chr9 3081502 3081897 -114780730 - MLT1A1 LTR MaLR 0 365 24 219 269 164 0 chr9 3081920 3081987 -114780640 + MIR SINE MIR 76 153 -55 642 198 161 0 chr9 3082238 3082400 -114780227 + MER5A DNA MER1_type 2 189 0 625 285 34 34 chr9 3082868 3082996 -114779631 - MIR SINE MIR -34 228 98 2252 186 83 2 chr9 3082996 3083463 -114779164 + MLT1D LTR MaLR 1 505 0 625 285 34 34 chr9 3083463 3083541 -114779086 - MIR SINE MIR -163 99 22 919 298 75 11 chr9 3085065 3085437 -114777190 + LTR16A LTR ERVL 55 450 0 871 190 34 34 chr9 3085624 3085748 -114776879 + MER3 DNA MER1_type 5 131 -78 1790 177 23 7 chr9 3085748 3085917 -114776710 - AluSx SINE Alu -2 310 132 1689 139 4 4 chr9 3085917 3086162 -114776465 - AluSx SINE Alu -15 297 53 1790 177 23 7 chr9 3086162 3086297 -114776330 - AluSx SINE Alu -180 132 1 871 190 34 34 chr9 3086297 3086377 -114776250 + MER3 DNA MER1_type 130 209 0 1320 219 40 15 chr9 3087983 3088307 -114774320 + MER57A LTR ERV1 72 403 0 320 181 97 42 chr9 3088308 3088380 -114774247 + MIR SINE MIR 45 120 -142 881 70 0 0 chr9 3089268 3089383 -114773244 + L1PA5 LINE L1 6024 6138 -16 215 122 0 24 chr9 3089527 3089568 -114773059 + (TTTC)n Simple_repeat Simple_repeat 1 40 0 458 304 0 30 chr9 3090734 3090902 -114771725 + GA-rich Low_complexity Low_complexity 1 163 0 3460 96 18 20 chr9 3090956 3091510 -114771117 + L1P LINE L1 1296 1848 -4298 2054 122 3 28 chr9 3092054 3092375 -114770252 - AluSq SINE Alu 0 313 1 335 307 92 33 chr9 3092557 3092710 -114769917 + L2 LINE L2 2988 3149 -164 22 0 0 0 chr9 3092896 3092918 -114769709 + AT_rich Low_complexity Low_complexity 1 22 0 5865 132 52 9 chr9 3093422 3094503 -114768124 + L1MC1 LINE L1 5188 6317 -16 2541 75 80 3 chr9 3094531 3094906 -114767721 - L1PA13 LINE L1 -5 6158 5755 2479 89 3 3 chr9 3094907 3095265 -114767362 - L1PA12 LINE L1 -329 5839 5482 809 111 0 0 chr9 3096617 3096725 -114765902 + AluSg/x SINE Alu 175 282 -30 345 216 0 0 chr9 3096933 3097007 -114765620 + L1MC4 LINE L1 7785 7858 -184 427 324 0 16 chr9 3097068 3097250 -114765377 + (TA)n Simple_repeat Simple_repeat 1 179 0 235 247 0 0 chr9 3097304 3097377 -114765250 + L1MC4 LINE L1 7925 7997 -45 424 211 0 21 chr9 3097377 3097472 -114765155 - FAM SINE Alu -5 180 88 1195 280 75 20 chr9 3098018 3098732 -114763895 + L1ME3A LINE L1 5183 5934 -236 21 0 0 0 chr9 3099803 3099824 -114762803 + AT_rich Low_complexity Low_complexity 1 21 0 977 134 56 12 chr9 3099899 3100081 -114762546 - THE1B LTR MaLR -2 362 180 883 241 0 0 chr9 3100198 3100385 -114762242 - THE1B LTR MaLR -177 187 1 2402 66 0 38 chr9 3100497 3100814 -114761813 + AluY SINE Alu 1 305 -6 380 312 102 16 chr9 3101056 3101242 -114761385 + MIR SINE MIR 61 262 0 242 389 18 42 chr9 3101781 3101948 -114760679 - MIR SINE MIR -79 183 21 225 0 0 0 chr9 3102126 3102151 -114760476 + (TG)n Simple_repeat Simple_repeat 1 25 0 292 277 125 8 chr9 3103662 3103786 -114758841 - MIR SINE MIR -63 145 19 493 256 96 0 chr9 3104248 3104404 -114758223 + MLT1J2 LTR MaLR 280 450 0 313 336 112 52 chr9 3104423 3104709 -114757918 + L2 LINE L2 2967 3269 -3 263 247 108 32 chr9 3105075 3105168 -114757459 + L2 LINE L2 2874 2973 -341 1160 292 78 19 chr9 3105226 3105669 -114756958 + LTR33 LTR ERVL 1 477 -44 2744 106 39 14 chr9 3105669 3106047 -114756580 + MLT2A1 LTR ERVL 1 393 -51 308 102 0 17 chr9 3106047 3106106 -114756521 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 2744 106 39 14 chr9 3106106 3106160 -114756467 + MLT2A1 LTR ERVL 393 444 0 1160 292 78 19 chr9 3106160 3106203 -114756424 + LTR33 LTR ERVL 477 516 -5 2509 0 0 0 chr9 3106318 3106586 -114756041 - AluYa5 SINE Alu -6 305 38 323 351 46 23 chr9 3106800 3106931 -114755696 + L2 LINE L2 3134 3267 -5 1821 163 15 18 chr9 3107581 3107918 -114754709 + MER2 DNA MER2_type 1 336 -9 284 302 147 0 chr9 3107942 3108071 -114754556 - MIR SINE MIR -5 257 110 2251 280 2 0 chr9 3108148 3108548 -114754079 - L1PA3 LINE L1 -3 6152 5752 225 262 131 0 chr9 3109523 3109584 -114753043 - L2 LINE L2 -19 3294 3226 520 260 172 21 chr9 3110158 3110443 -114752184 + MLT1L LTR MaLR 38 365 -250 272 383 104 0 chr9 3110577 3110778 -114751849 - L2 LINE L2 -663 2651 2430 252 59 0 0 chr9 3110893 3110927 -114751700 + (CTG)n Simple_repeat Simple_repeat 2 35 0 295 353 24 50 chr9 3111112 3111452 -114751175 + LTR16C LTR ERVL 159 489 -2 967 194 122 56 chr9 3111686 3112006 -114750621 - MER2 DNA MER2_type 0 344 4 1066 261 12 4 chr9 3112456 3112791 -114749836 + MLT1I LTR MaLR 13 388 -21 919 194 60 26 chr9 3113462 3113694 -114748933 + MLT1C LTR MaLR 11 250 -217 324 333 33 13 chr9 3113943 3114096 -114748531 + MIR SINE MIR 23 178 -84 387 153 0 0 chr9 3114105 3114177 -114748450 + LTR67 LTR ERVL 3 74 -483 502 308 136 40 chr9 3114232 3114606 -114748021 + LTR67 LTR ERVL 148 557 0 314 268 6 159 chr9 3115581 3115812 -114746815 - MIR SINE MIR -3 205 9 790 328 16 4 chr9 3115938 3116185 -114746442 + MIR SINE MIR 13 262 0 2226 114 0 7 chr9 3116534 3116840 -114745787 - AluSx SINE Alu -8 304 1 401 333 56 12 chr9 3116870 3117032 -114745595 - MIR3 SINE MIR -4 204 36 421 183 65 11 chr9 3117649 3117742 -114744885 + MER5A DNA MER1_type 9 106 -83 704 327 28 6 chr9 3119081 3119442 -114743185 + L1ME2 LINE L1 5452 5820 -301 1456 148 60 27 chr9 3120245 3120577 -114742050 - L1MA8 LINE L1 0 6291 5949 523 118 0 24 chr9 3121571 3121656 -114740971 - AluSc SINE Alu -226 83 1 3099 164 11 9 chr9 3121657 3122181 -114740446 + HUERS-P3 LTR ERV1 6198 6722 -2197 10382 184 29 39 chr9 3122181 3123335 -114739292 + HUERS-P3 LTR ERV1 6863 8028 -891 210 271 0 68 chr9 3123335 3123394 -114739233 + MER5A DNA MER1_type 1 55 -134 10382 184 29 39 chr9 3123394 3123411 -114739216 + HUERS-P3 LTR ERV1 8028 8044 -875 2250 114 0 7 chr9 3123411 3123719 -114738908 - AluSg SINE Alu -4 306 1 10382 184 29 39 chr9 3123719 3124567 -114738060 + HUERS-P3 LTR ERV1 8044 8919 0 2543 189 19 68 chr9 3124567 3125211 -114737416 + LTR9 LTR ERV1 1 612 0 1430 177 21 36 chr9 3125211 3125544 -114737083 - L1M4 LINE L1 -477 5707 5380 7146 46 2 0 chr9 3125644 3126999 -114735628 + L1PA5 LINE L1 4782 6138 -16 505 274 86 4 chr9 3127047 3127281 -114735346 + L1ME2 LINE L1 5879 6131 -33 665 200 18 12 chr9 3128725 3128765 -114733862 - L1MB1 LINE L1 -209 5959 5921 606 193 0 0 chr9 3128765 3128900 -114733727 - L1MB1 LINE L1 -1 6167 6033 665 200 18 12 chr9 3128900 3129029 -114733598 - L1MB1 LINE L1 -247 5921 5789 220 386 8 8 chr9 3129293 3129420 -114733207 + L2 LINE L2 2629 2755 -559 527 274 91 43 chr9 3129499 3129695 -114732932 + MIR SINE MIR 20 225 -37 209 194 0 0 chr9 3130165 3130201 -114732426 + (TGAA)n Simple_repeat Simple_repeat 4 39 0 186 133 0 0 chr9 3130922 3130952 -114731675 + (GAAA)n Simple_repeat Simple_repeat 1 30 0 1010 251 64 6 chr9 3131379 3131721 -114730906 - L1MB1 LINE L1 -554 5616 5255 710 333 89 24 chr9 3131851 3132223 -114730404 + LTR16C LTR ERVL 90 485 -6 235 270 79 0 chr9 3133070 3133159 -114729468 + L2 LINE L2 3218 3313 0 1873 155 0 7 chr9 3133300 3133597 -114729030 - AluJb SINE Alu -17 295 1 272 333 0 0 chr9 3133794 3133881 -114728746 - L2 LINE L2 -4 3268 3182 260 303 40 30 chr9 3134025 3134124 -114728503 - L2 LINE L2 -11 3302 3203 497 248 272 5 chr9 3134208 3134410 -114728217 + MIR SINE MIR 7 262 0 1345 271 123 35 chr9 3135014 3136138 -114726489 + L1ME2 LINE L1 322 1538 -4677 922 246 73 39 chr9 3136290 3136787 -114725840 + L1ME2 LINE L1 1864 2343 -3872 297 51 0 0 chr9 3136787 3136826 -114725801 + (CA)n Simple_repeat Simple_repeat 2 40 0 * 684 67 0 0 chr9 3136825 3136915 -114725712 + (TA)n Simple_repeat Simple_repeat 2 91 0 922 246 73 39 chr9 3136826 3137405 -114725222 + L1ME2 LINE L1 2343 2924 -3291 1620 244 55 32 chr9 3137417 3138069 -114724558 + L1ME2 LINE L1 3452 4118 -2097 * 1643 255 29 27 chr9 3138064 3138252 -114724375 + L1ME2 LINE L1 5259 5445 -788 2233 102 0 37 chr9 3138252 3138577 -114724050 + AluSp SINE Alu 1 313 0 2140 91 30 14 chr9 3138586 3138883 -114723744 + AluSc SINE Alu 6 307 -2 1643 255 29 27 chr9 3138883 3139401 -114723226 + L1ME2 LINE L1 5452 5955 -278 437 35 0 0 chr9 3139408 3139465 -114723162 - L1P LINE L1 -5916 230 174 2589 93 0 5 chr9 3139469 3139857 -114722770 + L1P LINE L1 674 1059 -5087 1429 176 87 31 chr9 3140383 3140764 -114721863 + LTR52 LTR ERVL 18 419 -2 259 257 76 29 chr9 3141203 3141308 -114721319 - MIR SINE MIR -94 168 59 349 259 108 76 chr9 3141654 3141839 -114720788 - MIR3 SINE MIR -10 198 8 623 228 14 100 chr9 3142006 3142287 -114720340 - L1MD2 LINE L1 -24 6335 6079 608 287 59 21 chr9 3142421 3142658 -114719969 + MIR SINE MIR 17 262 0 494 283 97 39 chr9 3142674 3142985 -114719642 - HAL1 LINE L1 -11 2496 2168 1306 266 55 82 chr9 3143182 3144174 -114718453 - HAL1 LINE L1 -803 1704 739 1437 239 45 19 chr9 3144186 3144648 -114717979 - MLT1E2 LTR MaLR 0 626 156 1290 181 4 49 chr9 3146449 3146715 -114715912 + AluJb SINE Alu 1 254 -58 358 236 55 0 chr9 3146884 3147011 -114715616 - L1ME4a LINE L1 0 6121 5988 1797 68 8 0 chr9 3147020 3147257 -114715370 - L1PA7 LINE L1 0 6154 5916 2177 106 6 13 chr9 3147273 3147585 -114715042 - AluSx SINE Alu -2 310 1 347 335 107 26 chr9 3147661 3148074 -114714553 - L1ME4a LINE L1 -331 5790 5317 1595 166 76 3 chr9 3148074 3148364 -114714263 - AluJb SINE Alu -1 311 1 347 335 107 26 chr9 3148364 3148433 -114714194 - L1ME4a LINE L1 -804 5317 5255 25 51 0 0 chr9 3148495 3148534 -114714093 + AT_rich Low_complexity Low_complexity 1 39 0 191 182 250 0 chr9 3148823 3148867 -114713760 - L2 LINE L2 -1 3271 3217 2390 95 0 7 chr9 3149524 3149829 -114712798 + AluSp SINE Alu 1 303 -10 211 260 87 39 chr9 3149894 3149998 -114712629 - MIR SINE MIR -56 206 98 1677 199 52 13 chr9 3150192 3150573 -114712054 + MER57A LTR ERV1 8 403 0 320 181 97 42 chr9 3150574 3150646 -114711981 + MIR SINE MIR 45 120 -142 198 0 0 0 chr9 3151052 3151074 -114711553 + (T)n Simple_repeat Simple_repeat 1 22 0 668 238 10 10 chr9 3151543 3151745 -114710882 + L1MDb LINE L1 1065 1266 -5143 879 287 75 41 chr9 3151950 3152442 -114710185 - MLT1H LTR MaLR -40 509 1 282 307 0 13 chr9 3152515 3152590 -114710037 - MIR SINE MIR -85 123 50 2637 182 22 55 chr9 3152902 3153480 -114709147 - L1MB5 LINE L1 -10 6164 5606 229 388 10 0 chr9 3153763 3153866 -114708761 - MIR SINE MIR -67 141 38 797 159 28 14 chr9 3153985 3154130 -114708497 + FRAM SINE Alu 19 165 -11 610 251 94 30 chr9 3154352 3154555 -114708072 - MIR SINE MIR -2 260 45 322 157 0 0 chr9 3154548 3154599 -114708028 - MER5A DNA MER1_type -138 51 1 * 427 322 6 23 chr9 3155979 3156153 -114706474 + MER5B DNA MER1_type 2 172 -6 1409 202 112 30 chr9 3156277 3156563 -114706064 - MSTD LTR MaLR 0 396 72 2108 131 3 7 chr9 3156563 3156868 -114705759 - AluSq SINE Alu -9 304 1 1409 202 112 30 chr9 3156868 3156947 -114705680 - MSTD LTR MaLR -324 72 1 316 298 106 13 chr9 3157650 3157801 -114704826 - L1ME4a LINE L1 -202 5919 5755 239 294 228 0 chr9 3157805 3157897 -114704730 + MER5A DNA MER1_type 69 181 -8 2213 130 0 3 chr9 3158053 3158361 -114704266 - AluSx SINE Alu -5 307 1 306 222 193 19 chr9 3158408 3158615 -114704012 - L1ME4a LINE L1 -36 6085 5843 184 365 40 0 chr9 3158649 3158723 -114703904 - L3 LINE CR1 -1043 534 458 351 404 13 30 chr9 3158794 3159024 -114703603 - L3 LINE CR1 -1309 268 43 613 317 69 29 chr9 3159048 3159395 -114703232 - MARNA DNA Mariner -201 385 25 1462 219 38 27 chr9 3159403 3159769 -114702858 - MLT1A2 LTR MaLR -4 370 1 216 0 0 0 chr9 3159960 3159984 -114702643 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 23 0 0 0 chr9 3160076 3160099 -114702528 + AT_rich Low_complexity Low_complexity 1 23 0 195 42 0 0 chr9 3160311 3160335 -114702292 + (T)n Simple_repeat Simple_repeat 1 24 0 1924 68 0 16 chr9 3161482 3161730 -114700897 - AluY SINE Alu -5 306 63 247 338 58 32 chr9 3161865 3162019 -114700608 + L2 LINE L2 3149 3306 -7 549 245 23 14 chr9 3162049 3162323 -114700304 + CT-rich Low_complexity Low_complexity 1 276 0 573 315 91 4 chr9 3163862 3164103 -114698524 - MLT1K LTR MaLR -172 416 155 434 292 8 8 chr9 3164673 3164803 -114697824 - MER94 DNA DNA -3 131 2 23 68 0 0 chr9 3165119 3165163 -114697464 + AT_rich Low_complexity Low_complexity 1 44 0 413 270 50 87 chr9 3166320 3166561 -114696066 + MER102a DNA MER1_type 92 323 -7 9759 25 1 0 chr9 3167418 3168580 -114694047 - L1P LINE L1 -814 5332 4170 277 403 8 0 chr9 3168914 3169043 -114693584 - MER89-int LTR ERV1 -338 6463 6334 2280 217 149 23 chr9 3169355 3170686 -114691941 - L1ME2 LINE L1 -125 6108 4605 548 284 34 0 chr9 3170715 3170919 -114691708 - L1ME2 LINE L1 -2046 4169 3959 1867 264 49 3 chr9 3170954 3171693 -114690934 - L1ME2 LINE L1 -2555 3660 2888 428 334 32 83 chr9 3171679 3172362 -114690265 - L1ME2 LINE L1 -5582 814 167 * 1608 255 31 16 chr9 3173057 3173508 -114689119 - LTR40c LTR ERVL -7 458 1 196 336 91 51 chr9 3175191 3175444 -114687183 - L2 LINE L2 -339 2975 2713 377 229 28 28 chr9 3175496 3175605 -114687022 - MIR SINE MIR -70 192 84 2326 234 41 53 chr9 3175838 3176669 -114685958 - L1MC4 LINE L1 -7 8035 7215 2028 221 94 52 chr9 3176648 3177422 -114685205 - L1M4 LINE L1 -1775 4371 3565 * 2019 244 61 23 chr9 3177452 3178191 -114684436 - L1M4 LINE L1 -2875 3271 2505 294 151 0 0 chr9 3178473 3178526 -114684101 + L1MC5 LINE L1 7724 7776 -185 734 202 12 40 chr9 3179089 3179262 -114683365 + AluJo SINE Alu 1 168 -144 368 103 116 0 chr9 3179263 3179684 -114682943 + (TA)n Simple_repeat Simple_repeat 1 469 0 1779 156 3 33 chr9 3179965 3180266 -114682361 - AluJb SINE Alu -20 292 1 1801 181 79 23 chr9 3180295 3180825 -114681802 - MLT2A2 LTR ERVL 0 554 1 202 233 0 0 chr9 3180830 3180873 -114681754 + MIR SINE MIR 196 238 -24 237 65 0 0 chr9 3180914 3180945 -114681682 + (TCC)n Simple_repeat Simple_repeat 3 33 0 321 343 56 0 chr9 3181019 3181127 -114681500 - MER91C DNA MER1_type 0 140 27 868 107 0 0 chr9 3182591 3182713 -114679914 - FRAM SINE Alu -1 175 54 351 320 109 6 chr9 3182721 3182896 -114679731 - MIR SINE MIR -62 200 8 1769 184 27 15 chr9 3182911 3183248 -114679379 + MER58B DNA MER1_type 1 341 0 299 378 6 47 chr9 3184126 3184298 -114678329 + MIR3 SINE MIR 1 145 -63 935 274 87 21 chr9 3184603 3184983 -114677644 - MLT1I LTR MaLR -3 406 2 457 268 87 100 chr9 3185168 3185698 -114676929 + L1ME4a LINE L1 5485 6007 -114 181 240 40 0 chr9 3185863 3185913 -114676714 + L2 LINE L2 3261 3312 -1 512 176 84 59 chr9 3186460 3186579 -114676048 + MER91B DNA MER1_type 1 122 -68 310 245 20 69 chr9 3186603 3186705 -114675922 + MER91B DNA MER1_type 93 189 -1 262 239 30 0 chr9 3186754 3186821 -114675806 - Charlie8 DNA MER1_type -1 2416 2348 216 272 0 99 chr9 3187187 3187268 -114675359 + L2 LINE L2 3239 3311 -2 1060 168 10 15 chr9 3187298 3187500 -114675127 + MER41B LTR ERV1 349 549 -86 210 37 0 0 chr9 3187785 3187812 -114674815 + (TAAAAA)n Simple_repeat Simple_repeat 4 30 0 337 340 51 9 chr9 3188269 3188484 -114674143 + L1P LINE L1 3509 3732 -2414 201 412 0 8 chr9 3188487 3188606 -114674021 + MIR SINE MIR 41 158 -104 779 216 59 54 chr9 3188668 3188835 -114673792 - MIR SINE MIR -23 239 69 1818 189 55 3 chr9 3188835 3189178 -114673449 + MLT1A1 LTR MaLR 1 361 -4 779 216 59 54 chr9 3189178 3189232 -114673395 - MIR SINE MIR -193 69 17 326 298 127 72 chr9 3189259 3189572 -114673055 + L1ME LINE L1 3862 4156 -1990 2136 174 61 2 chr9 3189572 3189980 -114672647 - MSTB1 LTR MaLR 0 432 1 326 298 127 72 chr9 3189980 3190281 -114672346 + L1ME LINE L1 4156 4510 -1636 588 283 60 57 chr9 3190802 3191116 -114671511 + MLT1J LTR MaLR 197 511 0 5092 73 16 0 chr9 3191489 3192176 -114670451 - L1PA10 LINE L1 -186 5982 5285 479 304 68 34 chr9 3192194 3192520 -114670107 + L1ME LINE L1 5484 5820 -301 2510 152 8 46 chr9 3193001 3193482 -114669145 + L1MA10 LINE L1 5740 6202 -132 303 339 99 9 chr9 3193697 3193918 -114668709 + MIR SINE MIR 6 246 -16 246 207 37 37 chr9 3194002 3194084 -114668543 - MER103 DNA DNA -82 84 3 1732 191 31 6 chr9 3194704 3195060 -114667567 - MLT1A1 LTR MaLR 0 365 1 24 0 0 0 chr9 3195071 3195095 -114667532 + AT_rich Low_complexity Low_complexity 1 24 0 547 326 82 10 chr9 3195705 3195901 -114666726 - MIR SINE MIR -33 229 20 1258 113 21 0 chr9 3196778 3196972 -114665655 - L1PB3 LINE L1 0 6154 5957 2869 9 0 0 chr9 3197356 3197671 -114664956 + AluYb8 SINE Alu 1 315 -3 426 253 7 20 chr9 3197683 3197829 -114664798 - L1MC4a LINE L1 -1913 5895 5752 433 280 19 32 chr9 3197902 3198180 -114664447 - L1MEd LINE L1 -4862 1257 1069 455 297 57 29 chr9 3198275 3198521 -114664106 + L1MEd LINE L1 971 1223 -4896 12450 205 41 13 chr9 3198970 3199010 -114663617 - L1MB1 LINE L1 -209 6195 6158 624 193 0 0 chr9 3199010 3199145 -114663482 - L1MB1 LINE L1 -1 6167 6033 12450 205 41 13 chr9 3199145 3202991 -114659636 - L1MB1 LINE L1 -246 6158 2190 197 284 116 0 chr9 3203642 3203731 -114658896 + MIR SINE MIR 52 148 -62 21 36 0 0 chr9 3204739 3204767 -114657860 + AT_rich Low_complexity Low_complexity 1 28 0 2710 61 3 0 chr9 3204810 3205154 -114657473 - L1PA7 LINE L1 0 6154 5810 1932 58 0 0 chr9 3205154 3205396 -114657231 + L1PA7 LINE L1 5572 5813 -341 336 306 27 20 chr9 3206695 3206842 -114655785 + L1ME4a LINE L1 5965 6112 -9 185 0 0 39 chr9 3207169 3207195 -114655432 + (TTA)n Simple_repeat Simple_repeat 3 27 0 517 324 117 28 chr9 3207541 3208001 -114654626 - L1M4 LINE L1 -1586 4560 4060 23 54 0 0 chr9 3208665 3208702 -114653925 + AT_rich Low_complexity Low_complexity 1 37 0 340 238 105 70 chr9 3209640 3209709 -114652918 + MIR SINE MIR 76 141 -121 339 25 0 0 chr9 3209709 3209749 -114652878 + (ATG)n Simple_repeat Simple_repeat 3 42 0 340 238 105 70 chr9 3209749 3209822 -114652805 + MIR SINE MIR 141 223 -39 284 315 15 54 chr9 3210734 3210864 -114651763 - MIR3 SINE MIR -11 197 73 503 130 0 0 chr9 3210999 3211076 -114651551 - MADE1 DNA Mariner -3 77 1 561 282 17 35 chr9 3212004 3212178 -114650449 - MER20B DNA MER1_type -609 174 4 621 293 25 20 chr9 3212996 3213194 -114649433 - MIR SINE MIR -56 206 8 219 262 33 16 chr9 3213326 3213387 -114649240 - MIR SINE MIR -115 147 86 29 0 0 0 chr9 3213468 3213497 -114649130 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr9 3213667 3213687 -114648940 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 345 140 0 0 chr9 3214837 3214894 -114647733 + (CA)n Simple_repeat Simple_repeat 2 58 0 716 239 177 5 chr9 3214928 3215137 -114647490 - MIR SINE MIR 0 262 18 337 300 134 89 chr9 3215134 3215603 -114647024 + L2 LINE L2 2770 3255 -17 * 336 281 22 11 chr9 3216857 3216946 -114645681 + MER91A DNA MER1_type 2 91 -105 2102 177 28 23 chr9 3217646 3219231 -114643396 + L1MC3 LINE L1 4731 7765 -20 1957 119 0 41 chr9 3219231 3219552 -114643075 - AluSx SINE Alu 0 309 1 2102 177 28 23 chr9 3219552 3219574 -114643053 + L1MC3 LINE L1 7765 7785 0 525 267 99 15 chr9 3219776 3220038 -114642589 + HAL1 LINE L1 1398 1681 -826 35 0 0 0 chr9 3220188 3220223 -114642404 + AT_rich Low_complexity Low_complexity 1 35 0 1325 178 114 11 chr9 3221831 3222112 -114640515 + AluSx SINE Alu 2 311 -1 1003 289 16 9 chr9 3223568 3223890 -114638737 + L1MCc LINE L1 130 453 -5970 388 246 48 60 chr9 3224372 3224539 -114638088 + L1MCc LINE L1 795 959 -5464 1060 279 73 26 chr9 3224603 3225091 -114637536 + L1MCc LINE L1 1339 1803 -5319 2172 86 58 0 chr9 3225091 3225382 -114637245 + AluSg SINE Alu 1 308 -2 1060 279 73 26 chr9 3225382 3225838 -114636789 + L1MCc LINE L1 1803 2518 -4604 28895 102 13 3 chr9 3225888 3231021 -114631606 - L1PA7 LINE L1 0 6469 1288 4747 17 0 0 chr9 3231025 3231567 -114631060 - L1PA2 LINE L1 0 6155 5614 4669 34 2 0 chr9 3231567 3232134 -114630493 + L1P LINE L1 4686 5253 -893 * 9008 98 32 5 chr9 3232127 3233391 -114629236 - L1PA7 LINE L1 -5161 1300 2 1819 169 0 19 chr9 3233573 3233881 -114628746 - AluJo SINE Alu -10 302 1 2893 236 64 26 chr9 3233925 3234795 -114627832 + L1MEc LINE L1 40 942 -5454 701 318 32 53 chr9 3234830 3235208 -114627419 - MLT1L LTR MaLR -123 492 123 2533 239 28 11 chr9 3235307 3235850 -114626777 + REP3 LTR ERV 11 562 0 644 264 70 0 chr9 3235977 3236178 -114626449 + MER58C DNA MER1_type 1 215 0 231 361 139 0 chr9 3236248 3236356 -114626271 - MIR SINE MIR -112 150 28 252 59 0 0 chr9 3236527 3236561 -114626066 + (GAAAA)n Simple_repeat Simple_repeat 1 34 0 211 245 75 0 chr9 3236791 3236844 -114625783 - L2 LINE L2 -4 3268 3212 320 268 145 41 chr9 3236980 3237249 -114625378 - MER102a DNA MER1_type 0 330 34 729 117 0 83 chr9 3237389 3237534 -114625093 - L1MD1 LINE L1 -14 6228 6096 213 227 0 0 chr9 3237672 3237716 -114624911 + (TATATG)n Simple_repeat Simple_repeat 6 49 0 606 228 42 5 chr9 3237727 3237916 -114624711 - L1MD1 LINE L1 -1985 5823 5628 874 298 80 35 chr9 3237931 3238723 -114623904 - L1MD1 LINE L1 -748 5398 4686 183 80 0 0 chr9 3238723 3238748 -114623879 + (CCCCCA)n Simple_repeat Simple_repeat 4 28 0 874 298 80 35 chr9 3238748 3239140 -114623487 - L1MD1 LINE L1 -1460 4686 4313 3577 126 24 0 chr9 3239152 3239730 -114622897 - L1MA5A LINE L1 -3 6294 5703 1522 196 37 0 chr9 3239730 3240021 -114622606 + L1PB4 LINE L1 5837 6143 -13 2967 149 18 9 chr9 3240037 3240592 -114622035 - L1MA5A LINE L1 -587 5710 5144 4076 129 25 71 chr9 3240592 3241414 -114621213 - LTR1 LTR ERV1 0 785 1 2967 149 18 9 chr9 3241414 3241789 -114620838 - L1MA5A LINE L1 -1153 5144 4774 327 297 25 0 chr9 3241942 3242060 -114620567 - L1MD1 LINE L1 -1987 4159 4039 1785 189 88 43 chr9 3242482 3242777 -114619850 - Charlie4a DNA MER1_type -1453 508 183 3827 14 0 0 chr9 3242777 3243216 -114619411 + L1PA2 LINE L1 5717 6155 0 1785 189 88 43 chr9 3243216 3243386 -114619241 - Charlie4a DNA MER1_type -1778 183 22 1769 163 3 3 chr9 3244605 3244930 -114617697 - AluSx SINE Alu 0 325 1 1068 202 79 128 chr9 3245326 3245394 -114617233 - MLT1D LTR MaLR -1 504 434 2354 104 0 0 chr9 3245394 3245701 -114616926 + AluSg SINE Alu 3 309 -1 1068 202 79 128 chr9 3245701 3246162 -114616465 - MLT1D LTR MaLR -71 434 1 2977 278 109 28 chr9 3247084 3249198 -114613429 - L1MC4a LINE L1 -758 5388 3850 311 88 0 18 chr9 3249198 3249255 -114613372 + (TA)n Simple_repeat Simple_repeat 1 56 0 2977 278 109 28 chr9 3249255 3250104 -114612523 - L1MC4a LINE L1 -2296 3850 3071 399 21 0 0 chr9 3250328 3250376 -114612251 + (CA)n Simple_repeat Simple_repeat 2 49 0 267 293 75 43 chr9 3250442 3250630 -114611997 - HAL1b LINE L1 -929 419 226 26 30 0 0 chr9 3250753 3250786 -114611841 + AT_rich Low_complexity Low_complexity 1 33 0 216 67 0 0 chr9 3251270 3251300 -114611327 + (TTG)n Simple_repeat Simple_repeat 2 31 0 237 385 54 0 chr9 3253572 3253702 -114608925 + MIR3 SINE MIR 2 138 -70 194 276 163 0 chr9 3253964 3254062 -114608565 + MIR SINE MIR 8 121 -141 307 179 0 24 chr9 3254468 3254552 -114608075 + CT-rich Low_complexity Low_complexity 4 85 0 468 231 23 62 chr9 3255162 3255215 -114607412 + L2 LINE L2 3189 3242 -71 1378 250 82 52 chr9 3255215 3255739 -114606888 + MLT1F LTR MaLR 3 542 0 468 231 23 62 chr9 3255739 3255815 -114606812 + L2 LINE L2 3242 3313 0 23 0 0 0 chr9 3256378 3256401 -114606226 + AT_rich Low_complexity Low_complexity 1 23 0 243 266 78 101 chr9 3256417 3256635 -114605992 - L2 LINE L2 -174 3139 2927 345 24 0 0 chr9 3256713 3256755 -114605872 + (CA)n Simple_repeat Simple_repeat 1 42 0 224 228 0 0 chr9 3256923 3256980 -114605647 + T-rich Low_complexity Low_complexity 1 57 0 290 293 81 10 chr9 3256982 3257081 -114605546 - MIR SINE MIR -87 175 70 1123 176 27 5 chr9 3258037 3258259 -114604368 + L1MA9 LINE L1 6049 6275 -37 2128 99 3 11 chr9 3258574 3258885 -114603742 - AluSq SINE Alu 0 311 3 304 232 141 40 chr9 3259524 3259623 -114603004 + MER20B DNA MER1_type 70 178 -605 641 190 25 0 chr9 3259925 3260046 -114602581 - MLT2D LTR ERVL -274 140 17 882 220 70 0 chr9 3260073 3260273 -114602354 + MLT1H1 LTR MaLR 342 555 0 966 305 90 11 chr9 3260284 3260717 -114601910 + L2 LINE L2 2842 3308 -5 3258 151 36 31 chr9 3261368 3261923 -114600704 + MER74A LTR ERVL 1 558 0 304 281 12 0 chr9 3262047 3262129 -114600498 - L2 LINE L2 -4 3268 3186 1583 213 0 3 chr9 3262511 3262798 -114599829 + AluJo SINE Alu 1 286 -26 659 315 84 4 chr9 3262802 3263040 -114599587 - MIR SINE MIR 0 262 6 339 213 0 50 chr9 3264015 3264095 -114598532 - L2 LINE L2 -5 3308 3233 223 311 25 8 chr9 3265011 3265130 -114597497 + (CACG)n Simple_repeat Simple_repeat 1 121 0 425 193 211 18 chr9 3266833 3266947 -114595680 - MER82 DNA MER2_type -504 149 14 1140 244 136 40 chr9 3267474 3267924 -114594703 - MLT1D LTR MaLR 0 505 13 2245 109 0 10 chr9 3268220 3268532 -114594095 - AluY SINE Alu 0 311 3 249 146 0 0 chr9 3268599 3268647 -114593980 + (GA)n Simple_repeat Simple_repeat 1 48 0 509 254 204 33 chr9 3268678 3268953 -114593674 + Charlie2 DNA MER1_type 1 322 -2540 611 199 121 0 chr9 3268960 3269101 -114593526 + Charlie2 DNA MER1_type 1858 2015 -847 743 244 120 14 chr9 3269188 3269606 -114593021 + Charlie2 DNA MER1_type 2334 2795 -67 2244 116 6 30 chr9 3269633 3269994 -114592633 + MER50 LTR ERV1 1 352 -382 518 264 156 64 chr9 3270006 3270332 -114592295 - LTR18A LTR ERVL -1 356 1 1840 143 39 34 chr9 3270332 3270689 -114591938 + MER50 LTR ERV1 347 705 -29 749 233 25 6 chr9 3272645 3272804 -114589823 - MER5A DNA MER1_type -3 186 25 1450 172 31 151 chr9 3272934 3273359 -114589268 + MLT1A2 LTR MaLR 1 374 0 185 359 39 19 chr9 3273626 3273729 -114588898 + MIR SINE MIR 104 208 -54 321 301 141 47 chr9 3273736 3273992 -114588635 + L2 LINE L2 3032 3311 -2 2056 107 0 14 chr9 3274313 3274603 -114588024 + AluSc SINE Alu 1 286 -23 243 217 36 48 chr9 3275453 3275536 -114587091 + MIR SINE MIR 104 185 -77 240 231 19 0 chr9 3276270 3276322 -114586305 + (TATATG)n Simple_repeat Simple_repeat 5 57 0 253 298 118 8 chr9 3276327 3276554 -114586073 + L1MC4a LINE L1 5389 5640 -522 505 195 190 36 chr9 3277059 3277254 -114585373 + L1MC4a LINE L1 5674 5898 -1910 386 171 0 85 chr9 3277434 3277516 -114585111 - MER5B DNA MER1_type 0 178 104 249 290 176 51 chr9 3277725 3277901 -114584726 - MIR SINE MIR -45 217 20 337 261 76 8 chr9 3278839 3278958 -114583669 - L1ME4a LINE L1 -53 6068 5942 2585 36 3 7 chr9 3278963 3279268 -114583359 + AluY SINE Alu 1 304 -7 181 292 77 15 chr9 3279638 3279703 -114582924 - L3 LINE CR1 -1297 280 212 756 278 106 16 chr9 3280030 3280350 -114582277 - L2 LINE L2 -7 3306 2958 1504 215 7 7 chr9 3280575 3280863 -114581764 + AluJo SINE Alu 3 290 -22 264 30 0 0 chr9 3281036 3281069 -114581558 + (TG)n Simple_repeat Simple_repeat 2 34 0 715 236 0 8 chr9 3281268 3281395 -114581232 + FLAM_A SINE Alu 3 128 -5 2264 134 85 15 chr9 3283101 3283655 -114578972 - MER39 LTR ERV1 0 707 32 398 284 113 0 chr9 3283701 3283842 -114578785 - MIR SINE MIR -48 214 58 286 214 14 14 chr9 3284153 3284223 -114578404 + MIR SINE MIR 129 198 -64 544 276 46 46 chr9 3285522 3285565 -114577062 - MIR SINE MIR -64 198 156 1541 171 100 10 chr9 3285565 3285875 -114576752 - MER44D DNA MER2_type 0 609 2 544 276 46 46 chr9 3285875 3286027 -114576600 - MIR SINE MIR -105 157 3 211 182 0 0 chr9 3286075 3286108 -114576519 + polypurine Low_complexity Low_complexity 4 36 0 242 262 56 19 chr9 3286477 3286584 -114576043 + L1ME LINE L1 5314 5424 -2384 1307 211 57 80 chr9 3286588 3286836 -114575791 - MLT1C LTR MaLR -5 462 229 378 0 0 0 chr9 3286836 3286878 -114575749 + (TG)n Simple_repeat Simple_repeat 2 43 0 1307 211 57 80 chr9 3286878 3287102 -114575525 - MLT1C LTR MaLR -238 229 1 2313 118 0 0 chr9 3287375 3287680 -114574947 + AluSq SINE Alu 1 305 -8 21 0 0 0 chr9 3287870 3287891 -114574736 + AT_rich Low_complexity Low_complexity 1 21 0 1942 167 139 54 chr9 3288183 3288411 -114574216 + MER39 LTR ERV1 4 211 -496 2281 169 39 10 chr9 3288411 3288796 -114573831 + MSTD LTR MaLR 1 396 0 1942 167 139 54 chr9 3288796 3289183 -114573444 + MER39 LTR ERV1 211 707 0 829 288 99 20 chr9 3290349 3290703 -114571924 - L1ME3A LINE L1 -60 6110 5729 246 291 55 18 chr9 3291167 3291277 -114571350 + L1ME LINE L1 5532 5645 -476 243 374 61 8 chr9 3291371 3291502 -114571125 - L2 LINE L2 -1 3271 3134 1516 185 10 17 chr9 3291584 3291876 -114570751 - AluJo SINE Alu -18 294 5 368 40 20 0 chr9 3291879 3291929 -114570698 + (TTTA)n Simple_repeat Simple_repeat 1 51 0 524 117 0 0 chr9 3292029 3292106 -114570521 - L1M4 LINE L1 -863 5283 5207 1527 276 29 40 chr9 3292106 3292624 -114570003 - LTR40a LTR ERVL 0 519 8 371 242 32 24 chr9 3292634 3292758 -114569869 - L1ME3A LINE L1 -940 5206 5082 2730 192 49 48 chr9 3292762 3292780 -114569847 - L1ME3A LINE L1 -1022 5124 5108 2359 96 3 0 chr9 3292780 3293081 -114569546 - AluSp SINE Alu -11 302 1 2730 192 49 48 chr9 3293081 3293797 -114568830 - L1ME3A LINE L1 -1038 5108 4389 317 194 216 37 chr9 3293799 3293933 -114568694 - L1ME3A LINE L1 -3851 2295 2138 2061 128 7 3 chr9 3294415 3294720 -114567907 - AluSx SINE Alu -6 306 1 3985 129 48 12 chr9 3296028 3296503 -114566124 + L1MA6 LINE L1 5633 6138 -162 2631 168 12 16 chr9 3296503 3296931 -114565696 + MSTB LTR MaLR 1 426 0 3985 129 48 12 chr9 3296931 3297100 -114565527 + L1MA6 LINE L1 6138 6300 0 346 220 119 90 chr9 3297185 3297362 -114565265 - Charlie8 DNA MER1_type -2164 253 72 2259 99 3 0 chr9 3297512 3297806 -114564821 + AluSx SINE Alu 1 295 -17 324 284 10 49 chr9 3298433 3298535 -114564092 - MIR SINE MIR -161 101 4 244 322 8 50 chr9 3298567 3298688 -114563939 - MIR SINE MIR -63 145 30 986 291 76 46 chr9 3298791 3299738 -114562889 + MERVL LTR ERVL 4156 5209 -555 272 241 76 0 chr9 3300001 3300080 -114562547 + LTR33 LTR ERVL 419 503 -18 2193 113 10 0 chr9 3301208 3301510 -114561117 - AluSg SINE Alu -4 306 2 333 0 0 0 chr9 3301650 3301687 -114560940 + (TA)n Simple_repeat Simple_repeat 2 38 0 448 195 98 32 chr9 3301709 3301832 -114560795 + L1ME1 LINE L1 6036 6166 0 27 0 0 0 chr9 3302405 3302432 -114560195 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr9 3303384 3303407 -114559220 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr9 3309780 3309806 -114552821 + AT_rich Low_complexity Low_complexity 1 26 0 480 273 101 38 chr9 3313789 3313998 -114548629 + MARNA DNA Mariner 11 232 -354 509 296 94 31 chr9 3314072 3314295 -114548332 + MARNA DNA Mariner 328 564 -22 316 122 0 0 chr9 3314307 3314356 -114548271 - MADE1 DNA Mariner -31 49 1 298 241 0 0 chr9 3315347 3315405 -114547222 - L2 LINE L2 0 3313 3256 1696 104 120 12 chr9 3315724 3315978 -114546649 + AluSg SINE Alu 1 283 -23 351 65 0 0 chr9 3315978 3316024 -114546603 + (CAAG)n Simple_repeat Simple_repeat 2 47 0 468 321 92 22 chr9 3316276 3316547 -114546080 + L2 LINE L2 3024 3313 0 272 186 10 29 chr9 3316714 3316816 -114545811 + GA-rich Low_complexity Low_complexity 1 100 0 263 233 0 17 chr9 3317749 3317809 -114544818 + MIR SINE MIR 203 261 -1 811 238 23 0 chr9 3318126 3318298 -114544329 - MER58A DNA MER1_type -1 223 48 1762 152 11 11 chr9 3318299 3318610 -114544017 + AluJb SINE Alu 1 311 0 330 261 0 0 chr9 3318639 3318704 -114543923 - MER58A DNA MER1_type -42 65 1 1642 190 78 88 chr9 3319397 3319896 -114542731 - MLT1D LTR MaLR -11 494 1 385 322 38 43 chr9 3321535 3321746 -114540881 - MIR SINE MIR -6 256 47 234 143 0 24 chr9 3321781 3321823 -114540804 + MIR SINE MIR 34 74 -188 814 96 0 0 chr9 3321829 3321933 -114540694 + AluJb SINE Alu 197 300 -12 195 303 210 8 chr9 3321934 3322053 -114540574 + MIR SINE MIR 82 224 -38 1899 71 8 38 chr9 3322691 3322957 -114539670 + AluSp SINE Alu 44 301 -12 1680 258 131 28 chr9 3323627 3324250 -114538377 + MER115 DNA AcHobo 5 4029 -2 379 342 114 5 chr9 3326044 3326237 -114536390 + MIR SINE MIR 32 245 -17 27 81 0 0 chr9 3326845 3326907 -114535720 + AT_rich Low_complexity Low_complexity 1 62 0 39 22 0 0 chr9 3327191 3327237 -114535390 + AT_rich Low_complexity Low_complexity 1 46 0 743 254 43 70 chr9 3327805 3327932 -114534695 + MIR SINE MIR 8 126 -136 2286 98 0 13 chr9 3327932 3328248 -114534379 - AluSx SINE Alu 0 312 1 743 254 43 70 chr9 3328248 3328376 -114534251 + MIR SINE MIR 126 256 -6 583 270 41 130 chr9 3328502 3328894 -114533733 + L2 LINE L2 2914 3270 -2 312 327 36 18 chr9 3328902 3329012 -114533615 - MIR SINE MIR -67 141 30 381 316 85 32 chr9 3329133 3329470 -114533157 - L2 LINE L2 -225 3047 2682 248 314 25 17 chr9 3329488 3329606 -114533021 - L2 LINE L2 -797 2517 2399 641 239 97 85 chr9 3331284 3331531 -114531096 + MIR SINE MIR 12 261 -1 23 68 0 0 chr9 3332826 3332870 -114529757 + AT_rich Low_complexity Low_complexity 1 44 0 225 65 0 0 chr9 3332971 3333002 -114529625 + (TG)n Simple_repeat Simple_repeat 2 32 0 188 353 77 47 chr9 3333267 3333437 -114529190 + MIR SINE MIR 32 206 -56 24 0 0 0 chr9 3333881 3333905 -114528722 + AT_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chr9 3334250 3334282 -114528345 + AT_rich Low_complexity Low_complexity 1 32 0 644 265 127 38 chr9 3334289 3334778 -114527849 + L1ME4a LINE L1 5361 5894 -227 508 235 23 65 chr9 3334932 3335149 -114527478 + L1ME4a LINE L1 5676 5883 -238 1421 173 57 14 chr9 3335294 3335577 -114527050 - AluJo SINE Alu -17 295 1 24 0 0 0 chr9 3335618 3335642 -114526985 + AT_rich Low_complexity Low_complexity 1 24 0 2095 79 4 0 chr9 3335782 3336049 -114526578 - AluSp SINE Alu -4 309 42 917 309 91 9 chr9 3336162 3336682 -114525945 - L2 LINE L2 -3 3310 2738 1212 106 0 0 chr9 3338484 3338645 -114523982 - AluY SINE Alu -16 295 135 210 73 0 98 chr9 3339844 3339885 -114522742 + MER5B DNA MER1_type 25 61 -117 2296 74 0 13 chr9 3339914 3340212 -114522415 - AluY SINE Alu -17 294 1 229 337 10 10 chr9 3340230 3340331 -114522296 - MER5B DNA MER1_type -72 106 6 846 260 0 6 chr9 3340371 3340544 -114522083 - MER5A DNA MER1_type -16 173 2 213 336 136 9 chr9 3342015 3342125 -114520502 + MIR3 SINE MIR 31 154 -54 250 296 178 46 chr9 3342342 3342494 -114520133 + L2 LINE L2 2247 2418 -896 286 205 47 24 chr9 3342712 3342839 -114519788 + (TA)n Simple_repeat Simple_repeat 2 131 0 321 272 73 32 chr9 3342842 3343088 -114519539 - L1ME4a LINE L1 -161 5960 5705 201 171 0 0 chr9 3344382 3344417 -114518210 + (TA)n Simple_repeat Simple_repeat 2 36 0 256 191 43 0 chr9 3344778 3344872 -114517755 + (TA)n Simple_repeat Simple_repeat 2 99 0 4580 189 18 9 chr9 3345062 3346137 -114516490 - L1MB8 LINE L1 0 6178 5102 379 303 45 30 chr9 3346504 3346636 -114515991 - MIR SINE MIR -128 134 1 1204 282 80 16 chr9 3347629 3348115 -114514512 + LTR33 LTR ERVL 1 517 -4 26 30 0 0 chr9 3348220 3348253 -114514374 + AT_rich Low_complexity Low_complexity 1 33 0 412 289 0 0 chr9 3348461 3348565 -114514062 - MIR SINE MIR -11 251 148 256 196 0 0 chr9 3348979 3349030 -114513597 + MER3 DNA MER1_type 1 51 -158 * 803 237 41 0 chr9 3349027 3349221 -114513406 + MER3 DNA MER1_type 7 208 -1 22 35 0 0 chr9 3351880 3351909 -114510718 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr9 3352241 3352262 -114510365 + AT_rich Low_complexity Low_complexity 1 21 0 767 57 33 8 chr9 3353992 3354114 -114508513 + (GAAA)n Simple_repeat Simple_repeat 2 126 0 593 193 18 18 chr9 3355359 3355525 -114507102 + CT-rich Low_complexity Low_complexity 3 168 0 2277 98 0 3 chr9 3357528 3357825 -114504802 + AluSx SINE Alu 5 300 -12 249 167 0 0 chr9 3358780 3358834 -114503793 + (TA)n Simple_repeat Simple_repeat 2 55 0 587 285 54 51 chr9 3358853 3359204 -114503423 - L1MC4a LINE L1 -157 5964 5610 210 150 0 0 chr9 3360596 3360636 -114501991 + (CA)n Simple_repeat Simple_repeat 1 40 0 30 59 0 0 chr9 3360850 3360901 -114501726 + AT_rich Low_complexity Low_complexity 1 51 0 275 246 85 0 chr9 3362274 3362392 -114500235 - L1ME4a LINE L1 -30 6091 5964 329 349 48 27 chr9 3364602 3364748 -114497879 + MER5B DNA MER1_type 1 149 -29 215 150 50 100 chr9 3365000 3365060 -114497567 - L2 LINE L2 -8 3305 3249 465 287 0 9 chr9 3366459 3366574 -114496053 - L2 LINE L2 0 3272 3159 392 252 29 10 chr9 3367281 3367384 -114495243 - MIR SINE MIR -56 206 102 504 244 78 0 chr9 3367880 3367995 -114494632 + MIR3 SINE MIR 81 204 -4 24 0 0 0 chr9 3370271 3370295 -114492332 + AT_rich Low_complexity Low_complexity 1 24 0 227 224 86 0 chr9 3371382 3371440 -114491187 + MIR SINE MIR 61 123 -85 356 125 16 0 chr9 3371532 3371596 -114491031 + (TCCA)n Simple_repeat Simple_repeat 4 68 0 23 0 0 0 chr9 3373143 3373166 -114489461 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr9 3373231 3373259 -114489368 + AT_rich Low_complexity Low_complexity 1 28 0 263 200 20 0 chr9 3374765 3374815 -114487812 + MER34 LTR ERV1 1 51 -491 1491 175 69 102 chr9 3374826 3375025 -114487602 + MER39 LTR ERV1 232 436 -271 1972 107 0 24 chr9 3375025 3375379 -114487248 + AluSx SINE Alu 1 347 0 1491 175 69 102 chr9 3375379 3375670 -114486957 + MER39 LTR ERV1 436 707 0 1949 101 14 22 chr9 3375757 3376034 -114486593 + AluSc SINE Alu 35 309 0 222 91 0 0 chr9 3376685 3376718 -114485909 + (TG)n Simple_repeat Simple_repeat 2 34 0 304 341 30 22 chr9 3378346 3378481 -114484146 - L2 LINE L2 -19 3294 3159 24 32 0 0 chr9 3378547 3378578 -114484049 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr9 3379853 3379875 -114482752 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr9 3380111 3380140 -114482487 + AT_rich Low_complexity Low_complexity 1 29 0 207 139 0 0 chr9 3380480 3380516 -114482111 + (TA)n Simple_repeat Simple_repeat 1 36 0 33 43 0 0 chr9 3382013 3382060 -114480567 + AT_rich Low_complexity Low_complexity 1 47 0 665 195 0 9 chr9 3382416 3382529 -114480098 - L2 LINE L2 -1 3312 3201 21 36 0 0 chr9 3384394 3384422 -114478205 + AT_rich Low_complexity Low_complexity 1 28 0 186 43 0 0 chr9 3385392 3385415 -114477212 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 21 57 0 0 chr9 3386914 3386949 -114475678 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr9 3388172 3388202 -114474425 + AT_rich Low_complexity Low_complexity 1 30 0 2156 106 43 37 chr9 3388435 3388785 -114473842 + THE1B LTR MaLR 11 362 -2 1632 29 0 10 chr9 3390504 3390708 -114471919 + L1PA4 LINE L1 5954 6155 0 2069 138 19 32 chr9 3390822 3391191 -114471436 + THE1B LTR MaLR 1 364 0 197 337 124 72 chr9 3391275 3391468 -114471159 - L2 LINE L2 -555 2759 2557 282 204 0 97 chr9 3394542 3394635 -114467992 - MIR SINE MIR -62 200 117 359 182 15 15 chr9 3395472 3395538 -114467089 + MER5A DNA MER1_type 3 68 -121 1948 119 7 4 chr9 3395547 3395824 -114466803 + AluSx SINE Alu 3 280 -32 667 251 44 35 chr9 3395942 3396145 -114466482 - MER112 DNA MER1_type 0 260 56 240 200 15 62 chr9 3396175 3396240 -114466387 - MER112 DNA MER1_type -175 85 24 630 85 0 30 chr9 3396535 3396636 -114465991 + L1PA5 LINE L1 10 398 -6063 * 38595 68 3 3 chr9 3396621 3402477 -114460150 + L1PA5 LINE L1 612 6469 0 28 0 0 0 chr9 3402477 3402505 -114460122 + AT_rich Low_complexity Low_complexity 1 28 0 658 217 90 6 chr9 3403112 3403278 -114459349 + MER5A DNA MER1_type 5 184 -5 203 371 21 50 chr9 3403640 3403780 -114458847 + L2 LINE L2 3123 3258 -14 1869 138 6 22 chr9 3404213 3404524 -114458103 + AluSx SINE Alu 1 306 -6 244 254 0 0 chr9 3404634 3404689 -114457938 - L1MC4 LINE L1 -1339 6703 6649 387 0 0 0 chr9 3404711 3404754 -114457873 + (TA)n Simple_repeat Simple_repeat 2 44 0 717 299 56 43 chr9 3404770 3404854 -114457773 - L1MC4 LINE L1 -2000 5808 5727 2030 113 14 7 chr9 3404854 3405146 -114457481 - AluSx SINE Alu -18 294 1 717 299 56 43 chr9 3405146 3405456 -114457171 - L1MC4 LINE L1 -2081 5727 5409 303 298 53 40 chr9 3405465 3405693 -114456934 - L1MC4 LINE L1 -818 5328 5098 455 284 100 46 chr9 3405792 3406392 -114456235 - L1MC4 LINE L1 -1207 4939 4284 2173 118 0 3 chr9 3406392 3406689 -114455938 + AluSx SINE Alu 1 296 -16 455 284 100 46 chr9 3406689 3406842 -114455785 - L1MC4 LINE L1 -1862 4284 4141 21 36 0 0 chr9 3407650 3407678 -114454949 + AT_rich Low_complexity Low_complexity 1 28 0 344 226 89 96 chr9 3408429 3408575 -114454052 + L1MC4a LINE L1 5820 5964 -1844 2179 105 0 10 chr9 3408623 3408937 -114453690 + AluSx SINE Alu 1 311 -1 28 0 0 0 chr9 3409330 3409358 -114453269 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr9 3409564 3409593 -114453034 + AT_rich Low_complexity Low_complexity 1 29 0 180 238 0 0 chr9 3410066 3410129 -114452498 + (TA)n Simple_repeat Simple_repeat 1 63 0 2967 84 10 0 chr9 3410275 3410680 -114451947 - L1PA12 LINE L1 -7 6161 5753 375 262 0 36 chr9 3412301 3412385 -114450242 - MIR3 SINE MIR -19 189 109 2227 112 0 10 chr9 3413065 3413378 -114449249 + AluSx SINE Alu 1 310 -2 305 176 15 0 chr9 3413648 3413716 -114448911 - MER113 DNA MER1_type? -408 113 45 459 282 107 38 chr9 3414978 3415240 -114447387 + L2 LINE L2 1709 1988 -1326 1788 151 71 0 chr9 3416110 3416447 -114446180 - MER46B DNA MER2_type 0 236 1 208 354 89 54 chr9 3416448 3417053 -114445574 + L2 LINE L2 2619 3244 -28 24 32 0 0 chr9 3417479 3417510 -114445117 + AT_rich Low_complexity Low_complexity 1 31 0 636 282 14 53 chr9 3417795 3418004 -114444623 - MIR SINE MIR -4 258 58 2065 98 14 11 chr9 3418780 3419095 -114443532 + AluSx SINE Alu 1 316 0 23 33 0 0 chr9 3419235 3419265 -114443362 + AT_rich Low_complexity Low_complexity 1 30 0 219 390 83 38 chr9 3420175 3420644 -114441983 - L2 LINE L2 0 3313 2824 495 268 52 7 chr9 3420672 3420825 -114441802 - MER112 DNA MER1_type -11 249 90 242 244 12 93 chr9 3420874 3420960 -114441667 - MER112 DNA MER1_type -181 79 1 780 274 98 57 chr9 3421355 3421796 -114440831 + LTR67 LTR ERVL 99 557 0 940 226 0 5 chr9 3422483 3422673 -114439954 - MER5A DNA MER1_type 0 189 1 2164 105 0 3 chr9 3422749 3423045 -114439582 + AluSg SINE Alu 1 295 -15 562 222 40 0 chr9 3423525 3423651 -114438976 - L2 LINE L2 -1 3312 3182 7570 35 0 0 chr9 3423680 3425356 -114437271 + L1PA4 LINE L1 4477 6152 -3 300 289 22 0 chr9 3425369 3425459 -114437168 - L2 LINE L2 -1393 1921 1830 273 282 56 0 chr9 3425566 3425637 -114436990 - L2 LINE L2 -1 3312 3238 21 36 0 0 chr9 3426593 3426621 -114436006 + AT_rich Low_complexity Low_complexity 1 28 0 1263 164 5 14 chr9 3428203 3428422 -114434205 - MER46A DNA MER2_type 0 236 20 281 356 25 19 chr9 3429473 3429633 -114432994 - MIR SINE MIR -27 235 75 297 231 26 39 chr9 3429696 3429774 -114432853 - L2 LINE L2 -40 3273 3197 24 32 0 0 chr9 3430053 3430084 -114432543 + AT_rich Low_complexity Low_complexity 1 31 0 2060 131 3 3 chr9 3430980 3431278 -114431349 + AluSx SINE Alu 1 298 -14 1972 248 66 106 chr9 3431440 3431483 -114431144 - L1MC5 LINE L1 -164 7797 7754 2051 125 3 10 chr9 3431483 3431779 -114430848 + AluSq SINE Alu 1 294 -19 1972 248 66 106 chr9 3431779 3433757 -114428870 - L1MC5 LINE L1 -207 7754 5848 5325 170 55 28 chr9 3433964 3435211 -114427416 + L1MC1 LINE L1 5042 6322 -11 22 0 0 0 chr9 3435285 3435307 -114427320 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr9 3435414 3435437 -114427190 + (CAA)n Simple_repeat Simple_repeat 2 24 0 399 312 104 21 chr9 3435528 3435807 -114426820 + L1ME4a LINE L1 5257 5558 -612 237 243 40 59 chr9 3435989 3436141 -114426486 + L1ME4a LINE L1 5777 5925 -1883 210 284 15 0 chr9 3436148 3436215 -114426412 + (TA)n Simple_repeat Simple_repeat 2 69 0 234 225 0 67 chr9 3436218 3436307 -114426320 + L1ME4a LINE L1 5937 6019 -102 23 78 0 0 chr9 3436387 3436438 -114426189 + AT_rich Low_complexity Low_complexity 1 51 0 4144 264 113 50 chr9 3436538 3436820 -114425807 + L1MEc LINE L1 31 294 -5921 4089 27 0 0 chr9 3436820 3437299 -114425328 + L1PA3 LINE L1 5674 6152 -3 4144 264 113 50 chr9 3437299 3438244 -114424383 + L1MEc LINE L1 294 1178 -5037 334 265 0 0 chr9 3438244 3438327 -114424300 + FLAM SINE Alu 43 125 -8 4144 264 113 50 chr9 3438327 3440097 -114422530 + L1MEc LINE L1 1178 2836 -3379 471 35 0 0 chr9 3440097 3440154 -114422473 + (GGAA)n Simple_repeat Simple_repeat 1 57 0 4144 264 113 50 chr9 3440154 3440882 -114421745 + L1MEc LINE L1 2836 4042 -2173 438 69 0 0 chr9 3440882 3440940 -114421687 + (CA)n Simple_repeat Simple_repeat 2 59 0 4144 264 113 50 chr9 3440940 3441028 -114421599 + L1MEc LINE L1 4042 4123 -2092 26 30 0 0 chr9 3441346 3441379 -114421248 + AT_rich Low_complexity Low_complexity 1 33 0 465 174 58 0 chr9 3441387 3441508 -114421119 + L1M4 LINE L1 2904 3031 -3115 1735 145 20 3 chr9 3441517 3441820 -114420807 + L1MA4 LINE L1 5978 6285 -15 182 329 34 67 chr9 3442057 3442206 -114420421 + MIR SINE MIR 107 250 -12 2316 110 27 19 chr9 3442615 3442987 -114419640 - THE1C LTR MaLR 0 375 1 22 56 0 0 chr9 3443672 3443708 -114418919 + AT_rich Low_complexity Low_complexity 1 36 0 713 138 0 17 chr9 3445509 3445625 -114417002 + FLAM_C SINE Alu 28 141 -2 1616 160 4 0 chr9 3445640 3445917 -114416710 + AluJb SINE Alu 33 310 0 228 266 31 94 chr9 3447522 3447650 -114414977 - MIR SINE MIR -33 229 110 388 200 166 35 chr9 3447734 3447826 -114414801 - MER113 DNA MER1_type? 0 521 442 1997 131 0 7 chr9 3447826 3448117 -114414510 - AluSc SINE Alu -20 289 1 388 200 166 35 chr9 3448117 3448169 -114414458 - MER113 DNA MER1_type? -79 442 358 2214 81 14 3 chr9 3448963 3449258 -114413369 + AluSc SINE Alu 1 298 -11 298 314 62 67 chr9 3449943 3450153 -114412474 - MLT1I LTR MaLR -119 290 82 812 54 8 31 chr9 3450567 3450697 -114411930 + (TTTC)n Simple_repeat Simple_repeat 2 128 0 1430 251 115 6 chr9 3451033 3451532 -114411095 + MLT1E2 LTR MaLR 92 626 0 23 68 0 0 chr9 3452173 3452217 -114410410 + AT_rich Low_complexity Low_complexity 1 44 0 251 305 76 19 chr9 3452862 3452967 -114409660 + L2 LINE L2 3198 3308 -5 1722 185 55 9 chr9 3453089 3453435 -114409192 - MLT1A1 LTR MaLR -1 364 3 205 26 53 26 chr9 3453756 3453794 -114408833 + (TTTG)n Simple_repeat Simple_repeat 1 39 0 2133 41 3 45 chr9 3453796 3454086 -114408541 - AluY SINE Alu -33 278 1 30 0 0 0 chr9 3454124 3454154 -114408473 + AT_rich Low_complexity Low_complexity 1 30 0 42 20 0 0 chr9 3454408 3454457 -114408170 + AT_rich Low_complexity Low_complexity 1 49 0 497 218 80 80 chr9 3454462 3454650 -114407977 + L1ME2 LINE L1 5966 6153 -11 28 48 0 0 chr9 3454957 3454999 -114407628 + AT_rich Low_complexity Low_complexity 1 42 0 366 355 86 19 chr9 3455591 3455859 -114406768 + L3b LINE CR1 1105 1390 -193 1238 288 49 14 chr9 3456003 3456433 -114406194 + LTR16C LTR ERVL 43 487 -4 1832 109 0 117 chr9 3456481 3456831 -114405796 - AluSg1 SINE Alu 0 309 1 350 280 56 0 chr9 3457077 3457202 -114405425 + MER113 DNA MER1_type? 309 440 -81 289 255 143 0 chr9 3457441 3457539 -114405088 + MIR3 SINE MIR 74 185 -23 223 263 13 26 chr9 3457646 3457722 -114404905 + GA-rich Low_complexity Low_complexity 3 77 0 2062 111 0 0 chr9 3457742 3458022 -114404605 + AluY SINE Alu 1 280 -31 297 75 0 0 chr9 3458022 3458062 -114404565 + (CA)n Simple_repeat Simple_repeat 1 40 0 3729 126 52 56 chr9 3458066 3458798 -114403829 + L1MB2 LINE L1 5432 6164 -7 181 339 18 0 chr9 3458813 3458869 -114403758 + MIR3 SINE MIR 137 193 -15 2197 105 0 0 chr9 3459625 3459919 -114402708 + AluY SINE Alu 1 294 -17 2968 215 59 48 chr9 3459952 3460517 -114402110 + L1ME1 LINE L1 5318 5887 -279 7454 31 7 0 chr9 3460517 3461545 -114401082 + L1PA5 LINE L1 5119 6152 -2 2968 215 59 48 chr9 3461545 3461817 -114400810 + L1ME1 LINE L1 5887 6154 -12 297 179 38 19 chr9 3461876 3461982 -114400645 - Charlie7 DNA MER1_type -74 2538 2431 672 282 143 27 chr9 3461982 3462354 -114400273 - Charlie7 DNA MER1_type -1892 720 306 2163 131 3 0 chr9 3462490 3462802 -114399825 - AluSq SINE Alu 0 313 1 451 302 93 22 chr9 3463001 3463269 -114399358 - L2 LINE L2 0 3313 3027 411 21 0 0 chr9 3463826 3463874 -114398753 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 2083 108 10 7 chr9 3463877 3464173 -114398454 - AluSq SINE Alu -16 297 1 182 313 0 0 chr9 3464398 3464446 -114398181 + L2 LINE L2 3209 3256 -16 299 271 0 14 chr9 3464450 3464529 -114398098 - MIR SINE MIR -81 127 49 21 71 0 0 chr9 3464950 3464992 -114397635 + AT_rich Low_complexity Low_complexity 1 42 0 213 39 0 0 chr9 3465869 3465895 -114396732 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 22 0 0 0 chr9 3465942 3465964 -114396663 + AT_rich Low_complexity Low_complexity 1 22 0 712 186 23 8 chr9 3466011 3466140 -114396487 - FRAM SINE Alu -45 131 1 390 246 79 0 chr9 3466988 3467102 -114395525 - L1MC4 LINE L1 0 8042 7920 195 42 0 0 chr9 3467687 3467711 -114394916 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 345 289 96 26 chr9 3468400 3468556 -114394071 + MIR SINE MIR 96 262 0 208 348 79 22 chr9 3468720 3468947 -114393680 + L2 LINE L2 2835 3074 -239 1851 135 83 0 chr9 3469373 3469662 -114392965 + AluSp SINE Alu 1 313 0 200 213 0 0 chr9 3470231 3470278 -114392349 + (TAA)n Simple_repeat Simple_repeat 1 47 0 445 353 54 5 chr9 3470278 3470502 -114392125 - MIR SINE MIR 0 262 28 208 376 21 0 chr9 3470994 3471087 -114391540 + L2 LINE L2 2941 3035 -237 201 167 0 0 chr9 3471231 3471261 -114391366 + L2 LINE L2 3206 3235 -37 * 221 300 0 0 chr9 3471260 3471310 -114391317 - L3 LINE CR1 -469 1108 1059 23 0 0 0 chr9 3471310 3471333 -114391294 + AT_rich Low_complexity Low_complexity 1 23 0 1587 179 100 3 chr9 3473501 3473830 -114388797 + MER46B DNA MER2_type 1 236 0 742 124 0 18 chr9 3474066 3474179 -114388448 + THE1B LTR MaLR 1 111 -253 1678 93 0 72 chr9 3474183 3474461 -114388166 + THE1-int LTR MaLR 1 258 -1322 2179 133 8 31 chr9 3474474 3474834 -114387793 + THE1B LTR MaLR 13 364 0 368 17 317 0 chr9 3474851 3474911 -114387716 - MADE1 DNA Mariner 0 80 2 338 238 20 0 chr9 3475637 3475738 -114386889 - MER113 DNA MER1_type? -323 198 96 757 258 104 43 chr9 3475746 3476758 -114385869 + HAL1 LINE L1 380 1534 -973 488 244 18 18 chr9 3476745 3476909 -114385718 + HAL1 LINE L1 2022 2185 -322 * 186 43 0 0 chr9 3476992 3477015 -114385612 + (TGGG)n Simple_repeat Simple_repeat 1 23 0 446 291 20 45 chr9 3477075 3477274 -114385353 + HAL1 LINE L1 2285 2478 -29 21 36 0 0 chr9 3477665 3477693 -114384934 + AT_rich Low_complexity Low_complexity 1 28 0 1086 212 4 4 chr9 3477704 3477935 -114384692 + L1PB4 LINE L1 5925 6155 -1 21 36 0 0 chr9 3478091 3478119 -114384508 + AT_rich Low_complexity Low_complexity 1 28 0 2287 77 7 3 chr9 3478127 3478427 -114384200 + AluY SINE Alu 1 301 -10 204 312 205 9 chr9 3478926 3479141 -114383486 - L2 LINE L2 -5 3308 3052 328 217 0 72 chr9 3479208 3479291 -114383336 + L2 LINE L2 3232 3308 -5 7504 36 1 0 chr9 3479986 3481663 -114380964 - L1PA4 LINE L1 0 6155 4477 562 222 40 0 chr9 3481692 3481818 -114380809 + L2 LINE L2 3182 3312 -1 2092 109 3 3 chr9 3482298 3482592 -114380035 - AluSg SINE Alu -16 294 1 940 226 0 5 chr9 3482668 3482858 -114379769 + MER5A DNA MER1_type 1 189 0 780 274 98 57 chr9 3483545 3483986 -114378641 - LTR67 LTR ERVL 0 557 99 242 244 12 93 chr9 3484381 3484467 -114378160 + MER112 DNA MER1_type 1 79 -181 495 268 52 7 chr9 3484516 3484669 -114377958 + MER112 DNA MER1_type 90 249 -11 219 390 83 38 chr9 3484697 3485166 -114377461 + L2 LINE L2 2824 3313 0 23 33 0 0 chr9 3486077 3486107 -114376520 + AT_rich Low_complexity Low_complexity 1 30 0 2064 98 14 11 chr9 3486247 3486562 -114376065 - AluSx SINE Alu 0 316 1 636 282 14 53 chr9 3487338 3487547 -114375080 + MIR SINE MIR 58 258 -4 24 32 0 0 chr9 3487832 3487863 -114374764 + AT_rich Low_complexity Low_complexity 1 31 0 208 354 89 54 chr9 3488289 3488894 -114373733 - L2 LINE L2 -28 3244 2619 1788 151 71 0 chr9 3488895 3489232 -114373395 + MER46B DNA MER2_type 1 236 0 459 282 107 38 chr9 3490102 3490364 -114372263 - L2 LINE L2 -1326 1988 1709 305 176 15 0 chr9 3491626 3491694 -114370933 + MER113 DNA MER1_type? 45 113 -408 2227 112 0 10 chr9 3491964 3492277 -114370350 - AluSx SINE Alu -2 310 1 375 262 0 36 chr9 3492957 3493041 -114369586 + MIR3 SINE MIR 109 189 -19 2906 89 10 2 chr9 3494662 3495068 -114367559 + L1PA12 LINE L1 5753 6161 -7 180 238 0 0 chr9 3495214 3495277 -114367350 + (TA)n Simple_repeat Simple_repeat 2 64 0 22 35 0 0 chr9 3495750 3495779 -114366848 + AT_rich Low_complexity Low_complexity 1 29 0 28 0 0 0 chr9 3495985 3496013 -114366614 + AT_rich Low_complexity Low_complexity 1 28 0 2179 105 0 10 chr9 3496406 3496720 -114365907 - AluSx SINE Alu -1 311 1 344 226 89 96 chr9 3496768 3496914 -114365713 - L1MC4a LINE L1 -1844 5964 5820 21 36 0 0 chr9 3497665 3497693 -114364934 + AT_rich Low_complexity Low_complexity 1 28 0 596 281 107 48 chr9 3498499 3498653 -114363974 + L1MC4 LINE L1 4140 4283 -1863 2173 118 0 3 chr9 3498653 3498950 -114363677 - AluSx SINE Alu -16 296 1 596 281 107 48 chr9 3498950 3499550 -114363077 + L1MC4 LINE L1 4283 4939 -1207 707 301 56 43 chr9 3499886 3500196 -114362431 + L1MC4 LINE L1 5409 5727 -2081 2030 113 14 7 chr9 3500196 3500488 -114362139 + AluSx SINE Alu 1 294 -18 707 301 56 43 chr9 3500488 3500572 -114362055 + L1MC4 LINE L1 5727 5808 -2000 387 0 0 0 chr9 3500588 3500631 -114361996 + (TA)n Simple_repeat Simple_repeat 2 44 0 244 254 0 0 chr9 3500653 3500708 -114361919 + L1MC4 LINE L1 6649 6703 -1339 6462 37 4 2 chr9 3501028 3501821 -114360806 - L1PA4 LINE L1 0 6155 5362 201 256 0 0 chr9 3501822 3501861 -114360766 + L3 LINE CR1 1526 1564 -13 410 296 140 34 chr9 3502488 3502667 -114359960 - MIR3 SINE MIR -9 199 2 457 297 30 30 chr9 3502759 3502924 -114359703 - MIR SINE MIR 0 262 98 352 254 164 0 chr9 3502973 3503083 -114359544 - Charlie8 DNA MER1_type -2179 238 111 632 0 0 0 chr9 3503839 3503915 -114358712 + L1HS LINE L1 6080 6155 0 312 282 55 55 chr9 3504010 3504140 -114358487 + Charlie8 DNA MER1_type 7 139 -202 2002 135 0 28 chr9 3504140 3504458 -114358169 + AluSq SINE Alu 1 309 -4 312 282 55 55 chr9 3504458 3504490 -114358137 + Charlie8 DNA MER1_type 138 169 -172 2168 111 3 0 chr9 3504657 3504955 -114357672 + AluSg SINE Alu 1 299 -11 380 211 0 0 chr9 3505103 3505179 -114357448 - MIR SINE MIR -106 156 81 850 258 41 9 chr9 3505737 3505958 -114356669 - MIR SINE MIR -33 229 2 32 26 0 0 chr9 3507638 3507677 -114354950 + AT_rich Low_complexity Low_complexity 1 39 0 446 295 54 63 chr9 3509838 3510153 -114352474 + L2 LINE L2 1762 2073 -1241 201 158 0 0 chr9 3510185 3510223 -114352404 + A-rich Low_complexity Low_complexity 5 42 0 216 367 0 46 chr9 3510303 3510412 -114352215 + L2 LINE L2 2207 2310 -1004 418 325 61 99 chr9 3510852 3510934 -114351693 + L2 LINE L2 2842 2926 -346 1695 165 3 25 chr9 3510934 3511249 -114351378 - AluJb SINE Alu -4 308 1 418 325 61 99 chr9 3511249 3511609 -114351018 + L2 LINE L2 2926 3267 -5 406 198 113 19 chr9 3512299 3512405 -114350222 - MIR SINE MIR -49 213 98 23 0 0 0 chr9 3512405 3512428 -114350199 + AT_rich Low_complexity Low_complexity 1 23 0 222 62 0 0 chr9 3513570 3513602 -114349025 + (TC)n Simple_repeat Simple_repeat 1 32 0 * 285 135 0 0 chr9 3513601 3513653 -114348974 + (CA)n Simple_repeat Simple_repeat 1 52 0 290 315 170 6 chr9 3514774 3514939 -114347688 - MIR3 SINE MIR -7 201 10 558 0 0 0 chr9 3515150 3515212 -114347415 + (TG)n Simple_repeat Simple_repeat 1 62 0 1472 175 77 0 chr9 3516358 3516643 -114345984 - AluJb SINE Alu -5 307 1 923 103 0 0 chr9 3516661 3516787 -114345840 - AluSq/x SINE Alu -181 132 7 298 370 82 32 chr9 3519010 3519229 -114343398 - MIR SINE MIR -13 249 20 307 247 78 0 chr9 3519488 3519565 -114343062 + L1MC4 LINE L1 6614 6696 -1346 567 221 0 0 chr9 3519635 3519793 -114342834 + (TA)n Simple_repeat Simple_repeat 1 158 0 243 236 0 0 chr9 3519943 3520015 -114342612 + (TA)n Simple_repeat Simple_repeat 1 72 0 775 188 29 0 chr9 3520022 3520160 -114342467 - FRAM SINE Alu -36 140 1 376 279 124 25 chr9 3521029 3521190 -114341437 - MIR SINE MIR -84 178 2 2152 217 112 11 chr9 3521410 3522429 -114340198 + L1MEc LINE L1 1982 3049 -3166 720 271 15 73 chr9 3522855 3523128 -114339499 + MIR SINE MIR 6 262 0 2218 115 0 0 chr9 3523158 3523463 -114339164 - AluSx SINE Alu -7 305 1 21 36 0 0 chr9 3524110 3524138 -114338489 + AT_rich Low_complexity Low_complexity 1 28 0 511 156 0 7 chr9 3524417 3524541 -114338086 + MER2 DNA MER2_type 1 204 -141 303 111 74 25 chr9 3524541 3524622 -114338005 - L1MA4A LINE L1 0 6303 6219 303 291 0 38 chr9 3524631 3524710 -114337917 + MER2 DNA MER2_type 270 345 0 404 205 47 94 chr9 3525226 3525353 -114337274 - MIR SINE MIR -56 206 86 286 327 77 0 chr9 3526367 3526471 -114336156 - MIR SINE MIR -40 222 111 24 0 0 0 chr9 3527686 3527710 -114334917 + AT_rich Low_complexity Low_complexity 1 24 0 2027 197 96 48 chr9 3527938 3528543 -114334084 + L1ME1 LINE L1 5504 6137 -29 320 77 19 0 chr9 3528544 3528596 -114334031 + (TA)n Simple_repeat Simple_repeat 1 53 0 2209 77 0 7 chr9 3528649 3528948 -114333679 + AluY SINE Alu 1 297 -14 2677 19 3 0 chr9 3529424 3529734 -114332893 - AluY SINE Alu 0 311 1 1542 167 13 39 chr9 3530022 3530328 -114332299 + AluJb SINE Alu 1 298 -14 664 249 63 34 chr9 3530706 3531056 -114331571 - L1M4 LINE L1 -4879 1663 1304 244 213 0 0 chr9 3531214 3531261 -114331366 - MLT1K LTR MaLR -55 533 487 2302 92 20 0 chr9 3531511 3531814 -114330813 - AluSc SINE Alu 0 309 1 1111 308 186 19 chr9 3531814 3532440 -114330187 + L3 LINE CR1 246 1015 -562 830 212 111 49 chr9 3532440 3532784 -114329843 + MLT1A1 LTR MaLR 1 365 0 1111 308 186 19 chr9 3532784 3532895 -114329732 + L3 LINE CR1 1015 1106 -471 300 283 15 91 chr9 3533079 3533277 -114329350 - L2 LINE L2 -48 3265 3083 216 0 0 0 chr9 3533294 3533318 -114329309 + (GGGAA)n Simple_repeat Simple_repeat 4 27 0 230 365 65 35 chr9 3533449 3533649 -114328978 - L2 LINE L2 -485 2829 2624 250 272 161 44 chr9 3533711 3533902 -114328725 + MIR SINE MIR 3 216 -46 38 22 0 0 chr9 3534789 3534834 -114327793 + AT_rich Low_complexity Low_complexity 1 45 0 2081 114 0 33 chr9 3534951 3535257 -114327370 - AluSx SINE Alu -11 301 6 453 290 30 8 chr9 3535538 3535669 -114326958 - MIR SINE MIR -31 231 98 1443 196 0 8 chr9 3536107 3536372 -114326255 - AluJo SINE Alu -49 263 1 617 144 0 9 chr9 3536848 3536959 -114325668 - L1MC3 LINE L1 -2 7783 7674 245 284 0 15 chr9 3536983 3537050 -114325577 - MLT1F1 LTR MaLR -457 110 45 1729 161 40 83 chr9 3537050 3537138 -114325489 - L1MC3 LINE L1 -687 7098 7008 1736 143 32 4 chr9 3537138 3537417 -114325210 - AluJb SINE Alu -25 287 1 1729 161 40 83 chr9 3537417 3537749 -114324878 - L1MC3 LINE L1 -777 7008 6696 202 244 0 0 chr9 3538263 3538308 -114324319 + A-rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr9 3538532 3538554 -114324073 + AT_rich Low_complexity Low_complexity 1 22 0 1632 150 25 50 chr9 3538783 3539103 -114323524 - AluJo SINE Alu 0 312 1 461 260 64 46 chr9 3539468 3539641 -114322986 - MIR SINE MIR -17 245 70 352 118 118 118 chr9 3540230 3540323 -114322304 - ORSL DNA AcHobo 0 275 183 2531 37 0 0 chr9 3540349 3540645 -114321982 - AluY SINE Alu -15 296 1 215 127 18 36 chr9 3540710 3540765 -114321862 + (TATAA)n Simple_repeat Simple_repeat 3 56 0 192 284 84 84 chr9 3541650 3541745 -114320882 + MIR SINE MIR 38 132 -76 14011 129 29 104 chr9 3542013 3544951 -114317676 + Tigger2 DNA MER2_type 3 2718 0 1107 185 25 0 chr9 3545114 3545314 -114317313 - MER58A DNA MER1_type -19 205 1 414 230 30 10 chr9 3545372 3545472 -114317155 - MER5A DNA MER1_type -79 110 9 355 298 8 58 chr9 3545486 3545607 -114317020 + L2 LINE L2 3199 3313 0 226 396 9 0 chr9 3545843 3545949 -114316678 + L2 LINE L2 2877 2983 -289 4211 121 65 8 chr9 3546094 3546806 -114315821 - Tigger3(Golem) DNA MER2_type -1 3028 2277 652 185 0 0 chr9 3546797 3546905 -114315722 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 369 280 21 0 chr9 3546970 3547063 -114315564 + L2 LINE L2 3178 3272 0 207 0 0 0 chr9 3547126 3547149 -114315478 + (A)n Simple_repeat Simple_repeat 1 23 0 23 0 0 0 chr9 3548262 3548285 -114314342 + AT_rich Low_complexity Low_complexity 1 23 0 6811 240 124 21 chr9 3549743 3552415 -114310212 + L1ME1 LINE L1 2125 5074 -1141 3474 212 128 70 chr9 3552414 3552632 -114309995 + L1MC3 LINE L1 6371 6575 -1210 * 216 0 0 0 chr9 3552632 3552656 -114309971 + (GA)n Simple_repeat Simple_repeat 1 24 0 3474 212 128 70 chr9 3552656 3553153 -114309474 + L1MC3 LINE L1 6575 7042 -743 289 310 0 0 chr9 3553153 3553224 -114309403 + MLT1F1 LTR MaLR 64 134 -433 3474 212 128 70 chr9 3553224 3553241 -114309386 + L1MC3 LINE L1 7042 7057 -728 2194 92 3 0 chr9 3553241 3553545 -114309082 + AluSq SINE Alu 1 305 0 3474 212 128 70 chr9 3553545 3554076 -114308551 + L1MC3 LINE L1 7057 7784 -1 3170 214 59 29 chr9 3554072 3554514 -114308113 + L1ME1 LINE L1 5061 5488 -747 * 5180 84 13 0 chr9 3554514 3555212 -114307415 - L1PA11 LINE L1 0 6174 5468 3170 214 59 29 chr9 3555212 3555922 -114306705 + L1ME1 LINE L1 5488 6230 -5 737 318 32 48 chr9 3555940 3556314 -114306313 + L3 LINE CR1 1183 1550 -27 230 301 126 7 chr9 3556643 3556786 -114305841 - MIR SINE MIR 0 262 103 504 374 161 15 chr9 3557057 3557461 -114305166 + L2 LINE L2 2810 3272 0 324 340 19 0 chr9 3561884 3561987 -114300640 + MIR SINE MIR 47 151 -111 21 0 0 0 chr9 3562736 3562757 -114299870 + AT_rich Low_complexity Low_complexity 1 21 0 45 0 0 0 chr9 3563383 3563428 -114299199 + AT_rich Low_complexity Low_complexity 1 45 0 3577 237 93 37 chr9 3564346 3565771 -114296856 + L1ME LINE L1 3591 5095 -1051 1993 140 37 31 chr9 3565872 3566223 -114296404 + MLT1B LTR MaLR 30 382 -8 544 255 101 27 chr9 3566254 3566442 -114296185 - LTR33 LTR ERVL -8 513 312 743 246 68 50 chr9 3566470 3566690 -114295937 - LTR33 LTR ERVL -297 224 1 1245 161 161 20 chr9 3568405 3568659 -114293968 - AluJo SINE Alu -12 290 1 2078 100 4 7 chr9 3569367 3569648 -114292979 + AluSp SINE Alu 5 284 -29 224 30 30 0 chr9 3570270 3570303 -114292324 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2154 100 0 0 chr9 3570305 3570585 -114292042 - AluSg SINE Alu -30 280 1 2741 88 0 23 chr9 3570585 3570982 -114291645 - L1MA3 LINE L1 -478 5827 5440 3540 83 2 10 chr9 3570995 3571491 -114291136 + L1PB1 LINE L1 5660 6151 0 2351 59 3 26 chr9 3571813 3572119 -114290508 - AluY SINE Alu -12 299 1 2114 106 10 3 chr9 3572232 3572524 -114290103 + AluSp SINE Alu 1 294 -19 626 200 32 0 chr9 3572618 3572743 -114289884 + L1ME LINE L1 5474 5602 -564 2410 70 17 0 chr9 3572743 3573041 -114289586 + AluSc SINE Alu 1 303 -6 1413 143 84 16 chr9 3573050 3573301 -114289326 + AluJb SINE Alu 36 303 -9 2418 76 3 0 chr9 3573307 3573608 -114289019 + AluSx SINE Alu 3 304 -8 675 231 78 12 chr9 3573791 3574087 -114288540 - L1MCa LINE L1 -3948 2478 2216 21 0 0 0 chr9 3574244 3574265 -114288362 + AT_rich Low_complexity Low_complexity 1 21 0 1201 211 24 0 chr9 3574265 3574511 -114288116 - MER90 LTR ERV1 0 614 363 2126 93 14 7 chr9 3574511 3574800 -114287827 - AluSc SINE Alu -18 291 1 21 0 0 0 chr9 3574805 3574826 -114287801 + AT_rich Low_complexity Low_complexity 1 21 0 198 0 0 0 chr9 3575178 3575200 -114287427 + (TC)n Simple_repeat Simple_repeat 2 23 0 412 288 106 8 chr9 3575623 3575755 -114286872 - MIR3 SINE MIR -5 203 59 1598 161 11 90 chr9 3576328 3576706 -114285921 + MER7A DNA MER2_type 1 346 0 822 124 23 0 chr9 3578074 3578203 -114284424 + LTR13 LTR ERVK 1 132 -875 6591 66 6 75 chr9 3578207 3579191 -114283436 + LTR13 LTR ERVK 92 1007 0 1982 146 3 13 chr9 3579274 3579589 -114283038 - AluJo SINE Alu 0 312 1 303 276 114 16 chr9 3579715 3579838 -114282789 + MIR SINE MIR 23 157 -105 764 169 22 7 chr9 3580295 3580431 -114282196 + MER5A DNA MER1_type 1 138 -51 303 309 168 35 chr9 3580778 3581063 -114281564 - L3 LINE CR1 -35 1542 1220 295 241 11 35 chr9 3581972 3582059 -114280568 - MIR SINE MIR -7 255 171 402 204 214 0 chr9 3582085 3582183 -114280444 - AluJb SINE Alu -193 119 1 767 280 76 5 chr9 3582191 3582402 -114280225 + L2 LINE L2 2109 2334 -980 1467 181 4 12 chr9 3582410 3582669 -114279958 - AluJo SINE Alu -55 257 1 822 209 63 29 chr9 3582674 3582880 -114279747 + L1M4 LINE L1 3926 4138 -2008 26 64 0 0 chr9 3583873 3583920 -114278707 + AT_rich Low_complexity Low_complexity 1 47 0 21 57 0 0 chr9 3584249 3584284 -114278343 + AT_rich Low_complexity Low_complexity 1 35 0 27 29 0 0 chr9 3585230 3585264 -114277363 + AT_rich Low_complexity Low_complexity 1 34 0 1499 208 10 17 chr9 3585705 3585993 -114276634 + AluJo SINE Alu 1 286 -26 1165 175 0 54 chr9 3586560 3586783 -114275844 - AluJo SINE Alu -17 295 85 733 247 123 0 chr9 3586966 3587193 -114275434 + MIR SINE MIR 8 262 0 347 249 116 52 chr9 3588069 3588242 -114274385 + MER20 DNA MER1_type 29 212 -7 229 212 212 0 chr9 3588254 3588320 -114274307 + L2 LINE L2 3229 3308 -5 207 276 161 0 chr9 3588624 3588711 -114273916 + MIR SINE MIR 12 112 -150 420 297 27 60 chr9 3588723 3588793 -114273834 + MIR SINE MIR 84 155 -107 756 248 97 19 chr9 3588793 3589103 -114273524 - MER46C DNA MER2_type 0 338 5 420 297 27 60 chr9 3589103 3589217 -114273410 + MIR SINE MIR 155 262 0 1280 176 9 94 chr9 3589679 3589997 -114272630 + AluJo SINE Alu 1 291 -21 28 48 0 0 chr9 3589997 3590039 -114272588 + AT_rich Low_complexity Low_complexity 1 42 0 295 315 79 0 chr9 3590169 3590296 -114272331 - MIR SINE MIR -6 256 120 1583 95 5 5 chr9 3590719 3590929 -114271698 + AluSp SINE Alu 1 210 -103 3222 179 59 14 chr9 3591036 3591684 -114270943 + L1MB5 LINE L1 5492 6168 -6 6661 61 2 24 chr9 3591769 3593161 -114269466 + L1PA7 LINE L1 4774 6134 -20 285 29 0 0 chr9 3593161 3593195 -114269432 + (TG)n Simple_repeat Simple_repeat 2 35 0 367 325 43 11 chr9 3593203 3593391 -114269236 + L1M4 LINE L1 4260 4453 -1693 23 33 0 0 chr9 3593803 3593833 -114268794 + AT_rich Low_complexity Low_complexity 1 30 0 1375 74 0 23 chr9 3593856 3594032 -114268595 + AluY SINE Alu 1 172 -139 22 35 0 0 chr9 3594718 3594747 -114267880 + AT_rich Low_complexity Low_complexity 1 29 0 2568 49 0 0 chr9 3595648 3595954 -114266673 - AluY SINE Alu -5 306 1 326 175 23 115 chr9 3595978 3596127 -114266500 - L1ME LINE L1 -355 5766 5674 2469 59 0 13 chr9 3596127 3596430 -114266197 - AluY SINE Alu -10 301 3 326 175 23 115 chr9 3596430 3596465 -114266162 - L1ME LINE L1 -447 5674 5637 2474 55 3 3 chr9 3596615 3596925 -114265702 - AluY SINE Alu -1 310 1 480 194 21 11 chr9 3597181 3597274 -114265353 + MER20 DNA MER1_type 1 94 -125 435 123 14 0 chr9 3598087 3598160 -114264467 + AluS SINE Alu 1 74 -239 2224 66 3 35 chr9 3598299 3598617 -114264010 + AluY SINE Alu 1 308 -3 4653 190 50 30 chr9 3598631 3600262 -114262365 - L1MB2 LINE L1 -18 6153 4555 2023 127 0 10 chr9 3600262 3600581 -114262046 - AluJb SINE Alu 0 312 1 4653 190 50 30 chr9 3600581 3600955 -114261672 - L1MB2 LINE L1 -1616 4555 4104 2368 55 3 35 chr9 3600955 3601265 -114261362 + AluY SINE Alu 1 300 -11 4653 190 50 30 chr9 3601265 3601295 -114261332 - L1MB2 LINE L1 -2067 4104 4076 37646 55 7 2 chr9 3601304 3606918 -114255709 - L1PA5 LINE L1 0 6154 511 369 62 31 31 chr9 3607020 3607084 -114255543 + Alu SINE Alu 238 301 -1 4540 207 127 36 chr9 3607098 3607799 -114254828 + L1MCb LINE L1 636 1272 -5292 2521 46 0 7 chr9 3607799 3608103 -114254524 - AluY SINE Alu -9 302 1 4540 207 127 36 chr9 3608103 3609164 -114253463 + L1MCb LINE L1 1272 2236 -4328 7258 47 5 0 chr9 3609164 3610225 -114252402 + L1PA5 LINE L1 5094 6151 -3 4540 207 127 36 chr9 3610225 3611000 -114251627 + L1MCb LINE L1 2236 3351 -3213 1340 246 47 0 chr9 3611008 3611395 -114251232 + L1MCb LINE L1 3908 4312 -2252 342 131 0 0 chr9 3611401 3611462 -114251165 + L1MC2 LINE L1 6274 6334 -10 2736 244 29 33 chr9 3611467 3612465 -114250162 + L1M4 LINE L1 2490 3483 -2663 2080 224 102 8 chr9 3612565 3613209 -114249418 - L1M4 LINE L1 -1264 4882 4178 364 262 24 36 chr9 3613335 3613503 -114249124 - HAL1b LINE L1 -435 913 748 * 622 303 101 21 chr9 3613485 3613822 -114248805 + L1MEd LINE L1 6 369 -5750 497 171 0 0 chr9 3614228 3614304 -114248323 + AluJ/FLAM SINE Alu 6 81 -231 382 93 0 0 chr9 3614383 3614437 -114248190 + Alu SINE Alu 243 296 -6 182 333 56 0 chr9 3615184 3615274 -114247353 + MIR SINE MIR 49 143 -119 1963 117 4 0 chr9 3615506 3615779 -114246848 - AluSx SINE Alu 0 312 39 22 35 0 0 chr9 3615870 3615899 -114246728 + AT_rich Low_complexity Low_complexity 1 29 0 436 123 74 164 chr9 3616145 3616267 -114246360 + FRAM SINE Alu 49 159 -17 586 249 117 10 chr9 3616563 3616760 -114245867 - MIR SINE MIR 0 262 45 2091 137 0 0 chr9 3616822 3617115 -114245512 + AluY SINE Alu 1 293 -18 1492 130 0 5 chr9 3617361 3617577 -114245050 + AluSg/x SINE Alu 86 300 -10 509 379 86 19 chr9 3617590 3618123 -114244504 + L2 LINE L2 2268 2836 -478 272 368 40 0 chr9 3618542 3618667 -114243960 + L2 LINE L2 2907 3036 -236 684 325 51 0 chr9 3618677 3618914 -114243713 - MIR SINE MIR -3 259 11 2136 133 0 0 chr9 3619124 3619426 -114243201 + AluSg SINE Alu 1 302 -8 296 217 36 12 chr9 3620807 3620890 -114241737 + MLT1J1 LTR MaLR 360 444 -2 1428 167 0 0 chr9 3621324 3621540 -114241087 + AluJb SINE Alu 72 287 -25 32 0 0 0 chr9 3621930 3621962 -114240665 + AT_rich Low_complexity Low_complexity 1 32 0 1643 126 84 11 chr9 3621962 3622224 -114240403 - AluSx SINE Alu -31 281 1 520 265 90 90 chr9 3623350 3623761 -114238866 + MLT1J LTR MaLR 1 411 -100 502 254 24 102 chr9 3623966 3624171 -114238456 + MIR SINE MIR 20 208 -54 252 0 0 0 chr9 3624196 3624224 -114238403 + (CA)n Simple_repeat Simple_repeat 2 29 0 297 315 130 0 chr9 3624295 3624441 -114238186 + MIR3 SINE MIR 33 197 -11 313 281 30 85 chr9 3624475 3624627 -114238000 + L1ME3A LINE L1 5968 6108 -62 1731 204 66 75 chr9 3624627 3625186 -114237441 - MLT2B3 LTR ERVL 0 554 1 313 281 30 85 chr9 3625186 3625232 -114237395 + L1ME3A LINE L1 6108 6155 -15 2366 82 3 0 chr9 3625306 3625610 -114237017 + AluSg SINE Alu 1 305 -5 499 157 104 17 chr9 3625961 3626076 -114236551 - L1MC2 LINE L1 0 6344 6220 31403 108 10 59 chr9 3626256 3632705 -114229922 - L1PA7 LINE L1 -15 6139 12 1143 138 5 0 chr9 3632715 3632904 -114229723 - L1MC2 LINE L1 -108 6236 6047 6759 129 24 57 chr9 3632917 3633406 -114229221 - Tigger3b DNA MER2_type -1823 1205 701 1941 124 0 37 chr9 3633406 3633705 -114228922 + AluJb SINE Alu 1 288 -24 6759 129 24 57 chr9 3633705 3634461 -114228166 - Tigger3b DNA MER2_type -2327 701 1 1702 149 63 23 chr9 3634481 3634830 -114227797 - L1MC2 LINE L1 -339 6005 5643 2223 113 3 0 chr9 3634999 3635301 -114227326 + AluSg SINE Alu 1 303 -7 2244 98 0 7 chr9 3635647 3635944 -114226683 + AluSx SINE Alu 3 297 -15 366 345 91 0 chr9 3636548 3636713 -114225914 + MIR SINE MIR 49 228 -34 276 345 78 0 chr9 3636746 3636888 -114225739 + MIR SINE MIR 85 237 -25 770 177 0 0 chr9 3637907 3638031 -114224596 + AluSg/x SINE Alu 170 293 -19 846 237 71 0 chr9 3638556 3638754 -114223873 + MER58C DNA MER1_type 4 215 0 273 242 44 77 chr9 3639504 3639595 -114223032 + MER102b DNA MER1_type 254 341 0 4174 122 10 57 chr9 3639617 3640390 -114222237 + L1MB3 LINE L1 5440 6176 -7 193 333 0 0 chr9 3640445 3640493 -114222134 + MIR SINE MIR 49 96 -166 335 364 120 16 chr9 3640689 3641149 -114221478 - L2 LINE L2 -221 3051 2550 313 335 29 41 chr9 3641225 3641395 -114221232 + L2 LINE L2 2201 2368 -946 181 305 183 37 chr9 3641733 3641836 -114220791 + MIR SINE MIR 60 147 -115 533 247 114 6 chr9 3641836 3641994 -114220633 + MER5B DNA MER1_type 1 175 -3 181 305 183 37 chr9 3641994 3642054 -114220573 + MIR SINE MIR 147 247 -15 * 570 284 111 0 chr9 3642049 3642257 -114220370 - MIR SINE MIR 0 262 32 525 312 74 39 chr9 3644194 3644596 -114218031 - L2 LINE L2 -205 3108 2682 356 270 26 59 chr9 3644910 3645062 -114217565 + L1M4 LINE L1 3843 3989 -2157 1059 135 30 110 chr9 3645402 3645639 -114216988 - MER20 DNA MER1_type 0 219 2 1086 238 45 79 chr9 3645741 3646145 -114216482 - MLT1B LTR MaLR 0 390 1 377 328 65 14 chr9 3646284 3646854 -114215773 + L1M4 LINE L1 4151 4793 -1353 2418 67 0 3 chr9 3647065 3647365 -114215262 - AluY SINE Alu -12 299 1 336 325 33 8 chr9 3647474 3647594 -114215033 - L2 LINE L2 -703 2611 2489 3474 217 117 45 chr9 3647615 3648758 -114213869 - MER69B DNA AcHobo -1 1225 1 201 300 0 0 chr9 3648761 3648811 -114213816 - L2 LINE L2 -833 2481 2432 2689 218 65 37 chr9 3648885 3649661 -114212966 + L1MDb LINE L1 457 1389 -5020 1770 152 0 7 chr9 3649743 3650013 -114212614 + AluJb SINE Alu 1 268 -44 214 75 75 0 chr9 3650061 3650101 -114212526 + A-rich Low_complexity Low_complexity 6 48 0 2419 152 43 10 chr9 3650127 3650541 -114212086 + MSTA LTR MaLR 1 428 0 633 157 9 0 chr9 3650541 3650649 -114211978 + MSTA-int LTR MaLR 1 109 -1542 1581 156 0 8 chr9 3650649 3650893 -114211734 + MSTB LTR MaLR 185 426 0 1453 242 63 0 chr9 3650893 3651323 -114211304 + L1MDb LINE L1 1503 1959 -4447 889 189 0 0 chr9 3651326 3651479 -114211148 + FRAM SINE Alu 14 166 -10 2969 236 71 10 chr9 3651585 3652832 -114209795 + L1MDb LINE L1 2072 3379 -3027 2212 299 105 66 chr9 3652858 3654118 -114208509 + L2 LINE L2 984 2320 -994 1599 190 58 0 chr9 3654118 3654413 -114208214 + AluJb SINE Alu 1 312 0 2212 299 105 66 chr9 3654413 3654736 -114207891 + L2 LINE L2 2320 2629 -685 492 337 7 95 chr9 3655366 3655660 -114206967 + L3 LINE CR1 110 377 -1200 487 299 184 0 chr9 3655683 3655900 -114206727 - MIR SINE MIR 0 262 6 335 383 54 9 chr9 3655979 3656201 -114206426 + L3 LINE CR1 483 714 -863 2477 121 57 45 chr9 3656210 3656579 -114206048 + MSTA LTR MaLR 1 377 -51 1732 163 144 21 chr9 3656579 3656960 -114205667 + MSTA LTR MaLR 1 428 0 2477 121 57 45 chr9 3656960 3657013 -114205614 + MSTA LTR MaLR 377 428 0 193 239 137 34 chr9 3657013 3657130 -114205497 + L3 LINE CR1 724 852 -725 4852 28 11 0 chr9 3657136 3657708 -114204919 + L1PA4 LINE L1 5575 6152 -3 36 53 0 0 chr9 3658200 3658257 -114204370 + AT_rich Low_complexity Low_complexity 1 57 0 652 264 115 19 chr9 3658450 3658711 -114203916 + L3 LINE CR1 936 1221 -356 732 318 61 0 chr9 3658796 3659010 -114203617 + MIR SINE MIR 3 229 -33 2086 142 33 28 chr9 3659335 3659695 -114202932 + THE1B LTR MaLR 3 364 0 229 188 16 16 chr9 3660129 3660193 -114202434 - L1MDb LINE L1 -5440 969 906 1055 306 91 72 chr9 3660215 3660709 -114201918 - L2 LINE L2 -6 3307 2824 1646 167 47 0 chr9 3660709 3660985 -114201642 + AluJb SINE Alu 11 299 -13 1055 306 91 72 chr9 3660985 3661333 -114201294 - L2 LINE L2 -489 2824 2484 2490 63 0 0 chr9 3661333 3661632 -114200995 + AluY SINE Alu 1 299 -12 1055 306 91 72 chr9 3661632 3662003 -114200624 - L2 LINE L2 -829 2484 2058 330 302 213 0 chr9 3662234 3662403 -114200224 - L2 LINE L2 -1320 1994 1790 282 359 34 17 chr9 3662767 3662884 -114199743 - MIR3 SINE MIR -54 154 36 2459 63 7 3 chr9 3662990 3663293 -114199334 + AluY SINE Alu 1 304 -7 640 343 30 18 chr9 3663537 3663872 -114198755 + HERVL LTR ERVL 3569 3907 -1747 2037 146 21 29 chr9 3663872 3664250 -114198377 - THE1C LTR MaLR 0 375 1 1478 381 34 5 chr9 3664482 3665448 -114197179 + HERVL LTR ERVL 3962 4955 -699 613 263 120 31 chr9 3665859 3666113 -114196514 + LTR16A LTR ERVL 3 282 -175 813 196 0 0 chr9 3666115 3666258 -114196369 - FLAM_C SINE Alu 0 143 1 5211 175 90 0 chr9 3666625 3667561 -114195066 + LTR28 LTR ERV1 1 1020 0 23 33 0 0 chr9 3667576 3667606 -114195021 + AT_rich Low_complexity Low_complexity 1 30 0 507 165 31 0 chr9 3667854 3667951 -114194676 - L1M4 LINE L1 -539 5645 5546 210 91 0 0 chr9 3668422 3668455 -114194172 + (T)n Simple_repeat Simple_repeat 1 33 0 204 297 0 31 chr9 3669343 3669407 -114193220 - MER5A DNA MER1_type 0 189 128 25 0 0 0 chr9 3669437 3669462 -114193165 + AT_rich Low_complexity Low_complexity 1 25 0 258 240 8 104 chr9 3669669 3669794 -114192833 - L1MC/D LINE L1 -1921 5887 5775 390 293 24 16 chr9 3669805 3669928 -114192699 + MER5A DNA MER1_type 44 167 -22 404 278 59 53 chr9 3671196 3671365 -114191262 - MIR SINE MIR -87 175 6 220 238 0 32 chr9 3672086 3672149 -114190478 + (CATATA)n Simple_repeat Simple_repeat 5 65 0 326 146 12 61 chr9 3673564 3673646 -114188981 - HAL1 LINE L1 0 2507 2430 4433 97 11 32 chr9 3673737 3674399 -114188228 - MER39B LTR ERV1 -1 652 5 255 291 6 55 chr9 3674445 3674610 -114188017 - L1MC5 LINE L1 -33 7928 7772 2034 252 68 43 chr9 3674629 3674914 -114187713 - L1ME3A LINE L1 -13 6157 5881 2490 87 3 0 chr9 3674914 3675226 -114187401 - AluSp SINE Alu 0 313 1 2034 252 68 43 chr9 3675226 3676564 -114186063 - L1ME3A LINE L1 -289 5881 4484 247 316 51 17 chr9 3676788 3676965 -114185662 - HAL1 LINE L1 -1198 1309 1127 243 0 0 0 chr9 3676980 3677007 -114185620 + (TA)n Simple_repeat Simple_repeat 1 27 0 5945 115 7 3 chr9 3677007 3678353 -114184274 - L1PA15 LINE L1 -10 7574 6223 4417 201 18 10 chr9 3678355 3679378 -114183249 - L1PA15 LINE L1 -1435 6130 5100 545 202 23 55 chr9 3679360 3679578 -114183049 - HAL1 LINE L1 -1341 1166 956 * 566 137 0 0 chr9 3679583 3679685 -114182942 - L1MA8 LINE L1 -7 6284 6183 787 277 68 10 chr9 3679710 3680122 -114182505 - L1ME3A LINE L1 -1678 4468 4033 1093 159 0 23 chr9 3680126 3680302 -114182325 - AluJb SINE Alu -140 172 1 16913 148 68 5 chr9 3680302 3681707 -114180920 - L1PA15 LINE L1 -4385 3180 1865 204 40 0 0 chr9 3681707 3681732 -114180895 + (TCTCCC)n Simple_repeat Simple_repeat 1 25 0 16913 148 68 5 chr9 3681732 3683308 -114179319 - L1PA15 LINE L1 -5700 1865 11 17218 140 18 10 chr9 3683404 3686687 -114175940 - L1PA11 LINE L1 -2 7610 4286 2264 99 3 10 chr9 3686687 3686991 -114175636 - AluSg SINE Alu -8 302 1 17218 140 18 10 chr9 3686991 3687705 -114174922 - L1PA11 LINE L1 -3326 4286 3579 28613 120 11 57 chr9 3687718 3693753 -114168874 - L1PA7 LINE L1 -15 6139 426 219 36 0 0 chr9 3693753 3693781 -114168846 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 28613 120 11 57 chr9 3693781 3694178 -114168449 - L1PA7 LINE L1 -5728 426 12 4722 239 25 37 chr9 3694189 3696713 -114165914 - L1PA11 LINE L1 -3999 3585 7 827 244 41 51 chr9 3696724 3697114 -114165513 - L1M4 LINE L1 -951 5195 4810 652 256 122 48 chr9 3697117 3697684 -114164943 - L1MDb LINE L1 -5024 1194 630 362 367 66 15 chr9 3697748 3697944 -114164683 - L1MDb LINE L1 -5831 565 360 961 273 60 78 chr9 3698971 3699558 -114163069 + MER77 LTR ERV1 54 602 -3 825 217 38 79 chr9 3699566 3699946 -114162681 + MLT1A1 LTR MaLR 1 422 -6 757 179 0 0 chr9 3700528 3700651 -114161976 + FLAM_A SINE Alu 2 124 -9 519 260 8 0 chr9 3700810 3700937 -114161690 + MLT1L LTR MaLR 430 557 -58 195 129 0 0 chr9 3701187 3701218 -114161409 + (T)n Simple_repeat Simple_repeat 1 31 0 2036 98 7 11 chr9 3701221 3701498 -114161129 - AluSx SINE Alu 0 312 37 387 316 193 30 chr9 3702500 3702769 -114159858 - L3 LINE CR1 -85 1492 1180 348 316 72 24 chr9 3702861 3703234 -114159393 + L1MC4 LINE L1 7098 7488 -554 381 203 127 0 chr9 3703404 3703522 -114159105 + L1ME4a LINE L1 5977 6109 -12 250 387 34 42 chr9 3703574 3703812 -114158815 - L3 LINE CR1 -400 1177 942 502 316 17 11 chr9 3703869 3704043 -114158584 + MIR SINE MIR 87 261 -1 380 248 46 9 chr9 3705041 3705150 -114157477 - MLT1L LTR MaLR -339 276 164 2313 86 14 0 chr9 3705405 3705696 -114156931 - AluSx SINE Alu -17 295 1 270 355 118 0 chr9 3706226 3706319 -114156308 + MIR SINE MIR 31 134 -74 298 324 88 99 chr9 3706345 3706811 -114155816 - L2 LINE L2 0 3272 2812 207 162 0 0 chr9 3707353 3707390 -114155237 + CT-rich Low_complexity Low_complexity 3 39 0 1681 235 54 7 chr9 3708235 3708640 -114153987 + MER45B DNA AcHobo 1 424 -616 5242 120 24 14 chr9 3708640 3709589 -114153038 + L1MA8 LINE L1 5195 6154 -137 5864 110 12 0 chr9 3709601 3710550 -114152077 - L1PA8 LINE L1 -758 5388 4429 6002 68 2 9 chr9 3710550 3711331 -114151296 + L1PA8 LINE L1 5388 6492 -209 2304 107 0 3 chr9 3711331 3711640 -114150987 + AluSc SINE Alu 1 308 -1 6002 68 2 9 chr9 3711640 3711849 -114150778 + L1PA8 LINE L1 6492 6701 0 2689 164 91 2 chr9 3711857 3712404 -114150223 + MER45B DNA AcHobo 411 1006 -34 1045 45 8 0 chr9 3712481 3712613 -114150014 - L1PA7 LINE L1 -4 6150 6018 384 109 0 0 chr9 3712613 3712668 -114149959 + MER45B DNA AcHobo 984 1038 -2 1687 178 16 3 chr9 3712818 3713178 -114149449 + L1PB4 LINE L1 5812 6175 0 184 234 0 64 chr9 3713319 3713366 -114149261 + L2 LINE L2 3213 3256 -16 871 269 98 52 chr9 3713677 3714138 -114148489 - MLT1J LTR MaLR -8 503 22 2097 120 3 3 chr9 3714382 3714683 -114147944 - AluSx SINE Alu -6 306 6 376 330 28 0 chr9 3714797 3714906 -114147721 - MER5A DNA MER1_type -10 179 68 342 0 0 0 chr9 3716982 3717020 -114145607 + (TA)n Simple_repeat Simple_repeat 2 39 0 225 277 0 0 chr9 3718608 3718673 -114143954 + MLT1K LTR MaLR 519 583 -5 183 309 79 63 chr9 3718824 3718950 -114143677 - MIR SINE MIR 0 262 135 256 282 70 0 chr9 3719316 3719387 -114143240 - MIR SINE MIR -79 129 54 696 225 22 0 chr9 3719433 3719571 -114143056 - MER5A DNA MER1_type -29 160 20 24 32 0 0 chr9 3720419 3720450 -114142177 + AT_rich Low_complexity Low_complexity 1 31 0 1585 150 132 6 chr9 3720783 3721116 -114141511 + THE1C LTR MaLR 1 375 0 200 343 159 17 chr9 3721425 3721597 -114141030 - MIR3 SINE MIR -64 198 4 12765 180 40 47 chr9 3721615 3723508 -114139119 - L1MA4A LINE L1 0 7365 5460 180 0 0 0 chr9 3723508 3723528 -114139099 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 12765 180 40 47 chr9 3723528 3726196 -114136431 - L1MA4A LINE L1 -1905 5460 2646 1319 102 11 0 chr9 3726196 3726373 -114136254 - AluSp SINE Alu -3 310 132 12765 180 40 47 chr9 3726373 3728295 -114134332 - L1MA4A LINE L1 -4719 2646 712 1840 274 72 31 chr9 3728684 3729393 -114133234 - L1MA4A LINE L1 -6471 738 1 182 340 0 0 chr9 3729672 3729725 -114132902 - L2 LINE L2 0 3313 3261 301 200 60 184 chr9 3729768 3729953 -114132674 - MER5B DNA MER1_type 0 178 17 341 0 0 43 chr9 3730170 3730216 -114132411 + (CATTA)n Simple_repeat Simple_repeat 4 47 0 213 154 0 0 chr9 3730237 3730276 -114132351 + (TG)n Simple_repeat Simple_repeat 1 39 0 260 269 0 0 chr9 3730428 3730480 -114132147 - MIR3 SINE MIR -34 174 123 231 167 0 0 chr9 3731073 3731115 -114131512 + (CTG)n Simple_repeat Simple_repeat 1 42 0 477 300 170 0 chr9 3731462 3731662 -114130965 + MIR SINE MIR 29 262 0 416 244 64 32 chr9 3732123 3732279 -114130348 - MLT1J LTR MaLR -23 488 328 2239 109 7 7 chr9 3732686 3732990 -114129637 - AluSc SINE Alu -5 304 1 31 26 0 0 chr9 3733023 3733061 -114129566 + AT_rich Low_complexity Low_complexity 1 38 0 250 316 0 0 chr9 3733151 3733227 -114129400 + L1ME LINE L1 176 251 -5954 517 330 100 45 chr9 3733523 3734102 -114128525 + L1ME LINE L1 567 1177 -5028 489 304 35 3 chr9 3734128 3734417 -114128210 + L1ME LINE L1 1259 1556 -4840 207 0 0 0 chr9 3734451 3734474 -114128153 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 1639 268 151 20 chr9 3734559 3736056 -114126571 + L1ME LINE L1 2169 3825 -2390 303 259 259 26 chr9 3736104 3736293 -114126334 + L1ME LINE L1 3998 4230 -1985 1796 107 40 10 chr9 3736294 3736593 -114126034 + L1PB2 LINE L1 5722 6037 -114 728 280 83 34 chr9 3736591 3737145 -114125482 + L1ME LINE L1 4569 5149 -1066 * 349 299 75 7 chr9 3738171 3738318 -114124309 + MIR SINE MIR 105 261 -1 1946 97 19 58 chr9 3738454 3738617 -114124010 - AluSg1 SINE Alu -9 300 132 239 0 0 31 chr9 3738617 3738649 -114123978 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 1946 97 19 58 chr9 3738649 3738665 -114123962 - AluSg1 SINE Alu -177 132 117 2604 33 0 0 chr9 3738665 3738969 -114123658 - AluYb8 SINE Alu -14 304 1 1946 97 19 58 chr9 3738969 3739099 -114123528 - AluSg1 SINE Alu -192 117 2 749 210 26 65 chr9 3739462 3739691 -114122936 + MER112 DNA MER1_type 1 220 -40 279 233 106 100 chr9 3740130 3740291 -114122336 - MIR SINE MIR -57 205 45 186 43 0 0 chr9 3740433 3740456 -114122171 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1560 200 82 43 chr9 3742449 3742935 -114119692 - MLT1D LTR MaLR 0 505 1 465 250 22 71 chr9 3743027 3743211 -114119416 - MER5B DNA MER1_type -3 175 1 273 198 0 0 chr9 3745608 3745689 -114116938 + (CA)n Simple_repeat Simple_repeat 1 81 0 260 286 58 39 chr9 3746011 3746217 -114116410 + LTR16B LTR ERVL 4 213 -251 497 246 128 45 chr9 3748163 3748561 -114114066 - L1ME4a LINE L1 -4 6117 5687 1594 278 154 88 chr9 3749794 3750843 -114111784 - L2 LINE L2 0 3313 2334 204 40 0 0 chr9 3750843 3750868 -114111759 + (GGAGA)n Simple_repeat Simple_repeat 2 26 0 1594 278 154 88 chr9 3750868 3751005 -114111622 - L2 LINE L2 -979 2334 2207 553 234 16 0 chr9 3751005 3751129 -114111498 + MER94 DNA DNA 9 134 0 1594 278 154 88 chr9 3751129 3751560 -114111067 - L2 LINE L2 -1106 2207 1442 251 281 157 0 chr9 3751968 3752054 -114110573 + MIR SINE MIR 55 149 -59 2214 120 0 0 chr9 3753003 3753302 -114109325 - AluSx SINE Alu -13 299 1 295 337 61 0 chr9 3754462 3754560 -114108067 - L2 LINE L2 0 3272 3169 21 0 0 0 chr9 3754560 3754581 -114108046 + AT_rich Low_complexity Low_complexity 1 21 0 2745 74 21 5 chr9 3754581 3754959 -114107668 - L1PA10 LINE L1 0 6168 5785 215 271 0 0 chr9 3755169 3755228 -114107399 - L2 LINE L2 -298 2974 2916 2359 98 0 0 chr9 3755246 3755541 -114107086 + AluSg SINE Alu 1 295 -15 32 26 0 0 chr9 3755580 3755619 -114107008 + AT_rich Low_complexity Low_complexity 1 39 0 1056 183 18 22 chr9 3755743 3755972 -114106655 + MER96B DNA MER1_type? 190 417 0 208 167 0 0 chr9 3756426 3756462 -114106165 + L2 LINE L2 3273 3308 -5 2259 116 0 3 chr9 3757735 3758045 -114104582 - AluSx SINE Alu -3 309 1 2306 99 0 10 chr9 3758410 3758714 -114103913 - AluSq SINE Alu -12 301 1 2701 194 98 17 chr9 3759397 3759439 -114103188 + MER63C DNA MER1_type 11 48 -1012 267 31 0 0 chr9 3759439 3759471 -114103156 + (CA)n Simple_repeat Simple_repeat 2 33 0 2701 194 98 17 chr9 3759471 3760181 -114102446 + MER63C DNA MER1_type 48 824 -106 938 201 6 0 chr9 3760181 3760345 -114102282 - FRAM SINE Alu -7 169 5 415 234 21 0 chr9 3760349 3760443 -114102184 + MER63C DNA MER1_type 817 912 -18 297 279 77 93 chr9 3760504 3760751 -114101876 + MLT1J LTR MaLR 1 243 -268 382 182 130 71 chr9 3760797 3760951 -114101676 - MLT1J2 LTR MaLR -22 428 266 863 200 12 0 chr9 3761114 3761284 -114101343 - Tigger1 DNA MER2_type -2246 172 1 1327 190 0 4 chr9 3761381 3761607 -114101020 + AluJo SINE Alu 84 308 -4 1606 159 36 47 chr9 3762398 3762678 -114099949 + AluJb SINE Alu 1 298 -14 21 0 0 0 chr9 3762678 3762699 -114099928 + AT_rich Low_complexity Low_complexity 1 21 0 2405 80 7 0 chr9 3762883 3763184 -114099443 - AluSq SINE Alu -10 303 1 245 259 0 0 chr9 3763754 3763808 -114098819 + (TG)n Simple_repeat Simple_repeat 2 55 0 879 201 6 22 chr9 3763808 3763835 -114098792 - MER45A DNA AcHobo -1404 177 151 7613 27 0 0 chr9 3763835 3765230 -114097397 + L1PA4 LINE L1 4757 6152 -3 879 201 6 22 chr9 3765230 3765381 -114097246 - MER45A DNA AcHobo -1430 151 2 344 306 27 55 chr9 3765568 3765751 -114096876 + MIR SINE MIR 56 233 -29 21 36 0 0 chr9 3766596 3766624 -114096003 + AT_rich Low_complexity Low_complexity 1 28 0 407 316 21 16 chr9 3767981 3768168 -114094459 + MER117 DNA MER1_type 10 197 0 221 277 121 48 chr9 3768318 3768484 -114094143 - MIR SINE MIR 0 262 85 284 102 20 0 chr9 3771571 3771620 -114091007 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 998 216 50 0 chr9 3772117 3772339 -114090288 - MIR SINE MIR -8 254 22 185 387 40 0 chr9 3772378 3772453 -114090174 - L3 LINE CR1 -92 1485 1408 685 269 97 36 chr9 3772552 3772942 -114089685 - LTR16C LTR ERVL -18 473 60 980 175 6 0 chr9 3773077 3773243 -114089384 + MER5A DNA MER1_type 1 167 -22 567 275 86 57 chr9 3773433 3773840 -114088787 - MLT1J LTR MaLR -23 488 70 2357 93 0 0 chr9 3775126 3775427 -114087200 + AluY SINE Alu 1 301 -10 735 272 68 36 chr9 3775896 3776146 -114086481 + MIR SINE MIR 4 261 -1 275 292 358 0 chr9 3776321 3776458 -114086169 - MER5A DNA MER1_type 0 189 4 291 306 150 25 chr9 3776471 3776631 -114085996 + MIR SINE MIR 53 232 -30 1807 127 33 7 chr9 3776726 3777063 -114085564 + AluSx SINE Alu 1 344 0 1150 224 37 104 chr9 3777312 3777688 -114084939 + L1MEc LINE L1 36 373 -6023 2185 92 3 10 chr9 3777688 3777992 -114084635 + AluSx SINE Alu 1 302 -10 1150 224 37 104 chr9 3777992 3778105 -114084522 + L1MEc LINE L1 373 492 -5904 910 228 0 0 chr9 3778106 3778264 -114084363 + FRAM SINE Alu 1 157 -19 1920 216 145 8 chr9 3778296 3778943 -114083684 + L1MEc LINE L1 518 1253 -5143 1459 216 62 55 chr9 3778944 3779023 -114083604 + L1MEc LINE L1 1759 1836 -4560 1869 176 3 6 chr9 3779023 3779336 -114083291 - AluJb SINE Alu 0 312 1 1459 216 62 55 chr9 3779336 3779488 -114083139 + L1MEc LINE L1 1836 1985 -4411 1884 185 0 6 chr9 3779488 3779802 -114082825 - AluJo SINE Alu 0 312 1 1459 216 62 55 chr9 3779802 3780134 -114082493 + L1MEc LINE L1 1985 2327 -4069 * 3397 231 57 65 chr9 3780132 3781480 -114081147 + L1MEc LINE L1 2966 4297 -1918 1657 105 24 0 chr9 3781480 3781728 -114080899 + L1PA10 LINE L1 5915 6168 0 3397 231 57 65 chr9 3781728 3782092 -114080535 + L1MEc LINE L1 4297 4663 -1552 18766 157 46 25 chr9 3782098 3788948 -114073679 + L1M1 LINE L1 18 7008 -713 288 0 0 0 chr9 3789243 3789275 -114073352 + (A)n Simple_repeat Simple_repeat 1 32 0 1438 243 130 18 chr9 3789655 3790302 -114072325 + L2 LINE L2 2565 3311 -2 214 167 0 0 chr9 3790782 3790818 -114071809 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 31 58 0 0 chr9 3790981 3791033 -114071594 + AT_rich Low_complexity Low_complexity 1 52 0 643 277 116 55 chr9 3791129 3791855 -114070772 - L1MC4 LINE L1 -143 7899 7130 351 44 0 0 chr9 3791857 3791902 -114070725 + (TG)n Simple_repeat Simple_repeat 2 46 0 878 248 28 88 chr9 3792051 3792293 -114070334 - L1MC4 LINE L1 -981 7061 6849 2179 118 7 0 chr9 3792293 3792582 -114070045 - AluSx SINE Alu -21 291 1 878 248 28 88 chr9 3792582 3792726 -114069901 - L1MC4 LINE L1 -1193 6849 6698 206 229 147 83 chr9 3792966 3793075 -114069552 - MIR SINE MIR -70 138 23 5332 156 14 6 chr9 3793150 3794845 -114067782 + L1PA15 LINE L1 4309 6164 -1 963 177 23 0 chr9 3794982 3795157 -114067470 + MER5A DNA MER1_type 8 186 -3 227 313 31 0 chr9 3795608 3795672 -114066955 + MIR SINE MIR 119 184 -78 310 344 81 12 chr9 3796197 3796444 -114066183 + L2 LINE L2 2199 2462 -852 319 220 11 33 chr9 3796635 3796726 -114065901 - MIR SINE MIR -1 261 173 217 345 116 34 chr9 3796690 3797042 -114065585 + L2 LINE L2 2672 3059 -213 * 383 354 186 11 chr9 3797295 3797676 -114064951 - L2 LINE L2 0 3272 2825 1866 164 7 0 chr9 3798021 3798331 -114064296 + AluSx SINE Alu 1 312 0 1659 160 19 0 chr9 3798557 3798826 -114063801 - AluSx SINE Alu -38 274 1 313 343 56 9 chr9 3799485 3799593 -114063034 - MIR3 SINE MIR -93 115 3 1498 196 31 10 chr9 3799840 3800131 -114062496 - AluJo SINE Alu -15 297 1 360 298 158 35 chr9 3800669 3800840 -114061787 + MIR3 SINE MIR 3 194 -14 1691 195 36 28 chr9 3801063 3801452 -114061175 - MSTD LTR MaLR -4 392 1 4248 127 46 29 chr9 3803217 3804570 -114058057 + pTR5 LTR ERV1 738 2438 0 364 267 59 0 chr9 3804711 3804812 -114057815 - MIR3 SINE MIR -15 193 87 2343 87 23 0 chr9 3805152 3805452 -114057175 - AluSq SINE Alu -6 307 1 243 88 0 0 chr9 3806080 3806114 -114056513 + (TG)n Simple_repeat Simple_repeat 2 35 0 617 309 168 23 chr9 3806472 3806870 -114055757 + L3 LINE CR1 1101 1556 -21 780 286 61 12 chr9 3807156 3807595 -114055032 - MLT1J LTR MaLR -23 488 7 22 35 0 0 chr9 3807770 3807799 -114054828 + AT_rich Low_complexity Low_complexity 1 29 0 282 338 135 24 chr9 3808515 3808722 -114053905 - MIR SINE MIR -16 246 17 246 183 9 148 chr9 3808906 3808962 -114053665 - MLT1L LTR MaLR -6 609 575 1147 170 5 0 chr9 3808962 3809150 -114053477 + MER5A DNA MER1_type 1 189 0 246 183 9 148 chr9 3809150 3809208 -114053419 - MLT1L LTR MaLR -40 575 511 591 269 36 5 chr9 3809324 3809517 -114053110 - MLT1L LTR MaLR -289 326 128 369 308 38 8 chr9 3810619 3810752 -114051875 + MIR3 SINE MIR 49 185 -23 542 254 37 0 chr9 3810809 3810943 -114051684 + MIR SINE MIR 47 185 -77 618 193 107 0 chr9 3811201 3811351 -114051276 - MER5A DNA MER1_type -10 179 14 402 299 21 35 chr9 3811363 3811507 -114051120 - MER5A DNA MER1_type -28 161 20 281 237 0 118 chr9 3812019 3812112 -114050515 - MIR SINE MIR 0 262 181 1498 139 12 8 chr9 3812356 3812600 -114050027 + THE1B LTR MaLR 120 364 0 1045 266 39 53 chr9 3812629 3813043 -114049584 + MER20B DNA MER1_type 100 507 -276 296 279 0 0 chr9 3813055 3813134 -114049493 + (TA)n Simple_repeat Simple_repeat 1 79 0 886 246 14 7 chr9 3813207 3813483 -114049144 + MER20B DNA MER1_type 505 782 -1 325 350 72 6 chr9 3814052 3814232 -114048395 - MIR SINE MIR -50 212 21 763 270 178 14 chr9 3814496 3814918 -114047709 + MLT1H1 LTR MaLR 32 522 -33 189 0 0 0 chr9 3815283 3815304 -114047323 + (TTAA)n Simple_repeat Simple_repeat 4 24 0 757 142 0 0 chr9 3815307 3815413 -114047214 - AluSx SINE Alu -23 289 184 1354 95 5 37 chr9 3815495 3815685 -114046942 - AluSx SINE Alu -128 184 1 357 291 56 56 chr9 3817312 3817563 -114045064 + L2 LINE L2 2271 2521 -793 1866 146 17 0 chr9 3817987 3818289 -114044338 + AluSx SINE Alu 1 307 -5 744 199 8 0 chr9 3818414 3818545 -114044082 - FLAM_A SINE Alu -1 132 1 1180 270 81 18 chr9 3818935 3819331 -114043296 + L1ME3A LINE L1 5486 5906 -264 2332 80 22 14 chr9 3819332 3819681 -114042946 + LTR7 LTR ERV1 1 448 -2 338 209 82 77 chr9 3819723 3819919 -114042708 + L1ME3A LINE L1 5903 6099 -71 1706 152 35 7 chr9 3819941 3820224 -114042403 - AluJb SINE Alu -21 291 1 249 108 0 0 chr9 3820302 3820339 -114042288 + (GA)n Simple_repeat Simple_repeat 2 38 0 583 114 13 0 chr9 3821687 3821766 -114040861 + MADE1 DNA Mariner 1 80 0 250 161 70 119 chr9 3821846 3821989 -114040638 - L1ME4a LINE L1 -11 6110 5975 2177 132 3 0 chr9 3823419 3823730 -114038897 - AluSx SINE Alu 0 312 1 26 0 0 0 chr9 3823730 3823756 -114038871 + AT_rich Low_complexity Low_complexity 1 26 0 21 71 0 0 chr9 3824418 3824460 -114038167 + AT_rich Low_complexity Low_complexity 1 42 0 2262 77 3 46 chr9 3824990 3825315 -114037312 - AluY SINE Alu 0 311 1 1741 176 137 56 chr9 3825705 3826172 -114036455 - MLT1D LTR MaLR 0 505 1 212 263 0 0 chr9 3826529 3826586 -114036041 + (CATA)n Simple_repeat Simple_repeat 4 60 0 499 289 19 120 chr9 3826614 3826720 -114035907 - L2 LINE L2 -199 3114 2999 2236 125 0 0 chr9 3826720 3827023 -114035604 + AluSx SINE Alu 1 303 -9 499 289 19 120 chr9 3827023 3827182 -114035445 - L2 LINE L2 -314 2999 2876 941 245 54 113 chr9 3827269 3827845 -114034782 + MER34 LTR ERV1 1 542 0 240 287 298 0 chr9 3827931 3828025 -114034602 - MIR SINE MIR -115 147 26 384 194 87 0 chr9 3828371 3828474 -114034153 + MER104 DNA Tc2 6 117 -63 1909 114 13 40 chr9 3830704 3831002 -114031625 + AluSx SINE Alu 1 290 -22 310 171 126 54 chr9 3832106 3832217 -114030410 + LTR41 LTR ERVL 5 123 -650 3105 168 42 32 chr9 3832268 3832883 -114029744 - L1MB7 LINE L1 -42 6142 5522 722 249 37 11 chr9 3832884 3833073 -114029554 - MLT1A2 LTR MaLR 0 374 181 1963 288 53 80 chr9 3833089 3834103 -114028524 - L1M4 LINE L1 -1299 4847 3807 270 0 0 0 chr9 3834103 3834133 -114028494 + (TTA)n Simple_repeat Simple_repeat 3 32 0 1982 122 3 14 chr9 3834140 3834428 -114028199 - AluSc SINE Alu -24 285 1 1963 288 53 80 chr9 3834428 3835091 -114027536 - L1M4 LINE L1 -2345 3801 3209 642 190 50 50 chr9 3835129 3835308 -114027319 + LTR41 LTR ERVL 585 763 -10 289 344 21 91 chr9 3835339 3835769 -114026858 + L2 LINE L2 2533 2932 -382 989 313 56 36 chr9 3836294 3836795 -114025832 - LTR33 LTR ERVL -8 513 3 22 35 0 0 chr9 3836839 3836868 -114025759 + AT_rich Low_complexity Low_complexity 1 29 0 331 213 0 0 chr9 3837588 3837649 -114024978 - L2 LINE L2 -1 3271 3211 316 328 50 0 chr9 3837980 3838099 -114024528 - MIR SINE MIR -108 154 30 192 186 0 47 chr9 3838322 3838365 -114024262 + L2 LINE L2 3229 3269 -3 977 220 113 50 chr9 3839234 3839598 -114023029 + LTR33A LTR ERVL 137 523 0 788 283 75 24 chr9 3839981 3840274 -114022353 - MLT1K LTR MaLR -4 584 277 405 399 0 0 chr9 3840452 3840590 -114022037 + MIR3 SINE MIR 19 156 -52 180 262 0 0 chr9 3840770 3840812 -114021815 + MIR3 SINE MIR 150 191 -17 202 264 43 71 chr9 3841762 3841902 -114020725 - L2 LINE L2 -188 3084 2949 1193 288 48 32 chr9 3842016 3842784 -114019843 + L2 LINE L2 2522 3306 -7 851 244 11 0 chr9 3844380 3844556 -114018071 - MER5A DNA MER1_type -5 184 7 599 250 62 82 chr9 3844797 3845041 -114017586 - MLT1K LTR MaLR -2 586 348 332 371 16 8 chr9 3847528 3847652 -114014975 - MIR SINE MIR -63 145 21 573 197 28 35 chr9 3848890 3849032 -114013595 + MER5B DNA MER1_type 35 175 -3 403 292 78 31 chr9 3849033 3849219 -114013408 + MIR SINE MIR 35 227 -35 1655 149 8 4 chr9 3849509 3849771 -114012856 + AluSx SINE Alu 32 294 -18 22 35 0 0 chr9 3849772 3849801 -114012826 + AT_rich Low_complexity Low_complexity 1 29 0 319 161 0 0 chr9 3849864 3849920 -114012707 - Alu SINE Alu -1 299 244 2918 6 0 0 chr9 3850079 3850390 -114012237 + AluY SINE Alu 1 311 0 245 326 57 17 chr9 3850406 3850581 -114012046 - MLT1J LTR MaLR 0 511 330 802 296 93 51 chr9 3850899 3851406 -114011221 - LTR67 LTR ERVL 0 557 30 242 139 0 0 chr9 3851480 3851516 -114011111 - MIR SINE MIR -62 146 111 434 280 70 33 chr9 3851523 3851794 -114010833 + L1MC4a LINE L1 5629 5909 -1899 1708 130 7 29 chr9 3851917 3852194 -114010433 + Tigger5 DNA MER2_type 2052 2322 -1 309 51 0 0 chr9 3852205 3852244 -114010383 + (CA)n Simple_repeat Simple_repeat 2 40 0 279 200 104 32 chr9 3852254 3852379 -114010248 + L1ME4a LINE L1 5985 6118 -3 201 191 0 24 chr9 3853788 3853830 -114008797 + T-rich Low_complexity Low_complexity 2 42 0 699 250 101 48 chr9 3853972 3854220 -114008407 + MIR SINE MIR 2 262 0 180 183 14 42 chr9 3854927 3854938 -114007689 + CT-rich Low_complexity Low_complexity 4 14 -58 1259 225 78 52 chr9 3854938 3855324 -114007303 - MSTD LTR MaLR 0 396 1 180 183 14 42 chr9 3855324 3855383 -114007244 + CT-rich Low_complexity Low_complexity 14 72 0 596 132 9 0 chr9 3855473 3855579 -114007048 + C-rich Low_complexity Low_complexity 5 111 0 2604 86 44 17 chr9 3856019 3856381 -114006246 - THE1C LTR MaLR 0 375 4 10152 98 46 47 chr9 3856384 3857654 -114004973 - THE1C-int LTR MaLR 0 1580 310 2357 127 48 20 chr9 3857654 3858008 -114004619 + THE1B LTR MaLR 1 364 0 12584 93 4 0 chr9 3858008 3859582 -114003045 + THE1B-int LTR MaLR 1 1580 0 2203 145 54 20 chr9 3859582 3859934 -114002693 + THE1B LTR MaLR 1 364 0 10152 98 46 47 chr9 3859934 3860243 -114002384 - THE1C-int LTR MaLR -1267 313 1 2944 96 5 16 chr9 3860245 3860622 -114002005 - THE1C LTR MaLR -2 373 1 266 197 28 155 chr9 3861025 3861167 -114001460 + LTR67 LTR ERVL 434 557 0 2803 136 13 75 chr9 3862101 3862624 -114000003 + L1MB3 LINE L1 5693 6183 0 415 276 104 8 chr9 3862921 3863055 -113999572 - MIR SINE MIR -65 197 51 257 366 67 8 chr9 3864376 3864510 -113998117 + MIR3 SINE MIR 19 160 -48 182 37 37 0 chr9 3865971 3865998 -113996629 + (CAATT)n Simple_repeat Simple_repeat 1 28 0 368 243 54 45 chr9 3866005 3866116 -113996511 - L2 LINE L2 -22 3250 3139 686 184 171 13 chr9 3866887 3867045 -113995582 + MER5A DNA MER1_type 7 189 0 184 195 0 24 chr9 3867045 3867084 -113995543 - MIR SINE MIR -64 198 161 213 277 0 0 chr9 3867315 3867362 -113995265 + (CACG)n Simple_repeat Simple_repeat 1 47 0 183 129 0 0 chr9 3867802 3867833 -113994794 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 183 200 60 60 chr9 3867909 3867959 -113994668 + L2 LINE L2 3222 3271 -1 1257 278 75 63 chr9 3868976 3869119 -113993508 - L1ME3A LINE L1 -144 6262 6122 2020 152 66 23 chr9 3869119 3869468 -113993159 + MER47A DNA MER2_type 2 365 -1 1257 278 75 63 chr9 3869468 3869600 -113993027 - L1ME3A LINE L1 -284 6122 5993 16839 146 35 8 chr9 3869600 3869957 -113992670 + Tigger4(Zombi) DNA MER2_type 1 347 -2384 195 100 0 0 chr9 3869957 3869987 -113992640 + (TTG)n Simple_repeat Simple_repeat 1 30 0 16839 146 35 8 chr9 3869987 3872290 -113990337 + Tigger4(Zombi) DNA MER2_type 347 2731 0 1257 278 75 63 chr9 3872290 3872545 -113990082 - L1ME3A LINE L1 -413 5993 5743 1354 156 138 86 chr9 3872545 3872733 -113989894 - MER2 DNA MER2_type 0 344 129 1691 133 94 0 chr9 3872733 3873010 -113989617 + AluSx SINE Alu 5 305 0 1354 156 138 86 chr9 3873010 3873147 -113989480 - MER2 DNA MER2_type -215 129 1 1257 278 75 63 chr9 3873147 3874453 -113988174 - L1ME3A LINE L1 -663 5743 4402 26 21 0 42 chr9 3874629 3874644 -113987983 + AT_rich Low_complexity Low_complexity 1 15 -31 2524 38 0 0 chr9 3874644 3874934 -113987693 - AluY SINE Alu -21 290 1 26 21 0 42 chr9 3874934 3874966 -113987661 + AT_rich Low_complexity Low_complexity 15 46 0 552 267 74 20 chr9 3875130 3875332 -113987295 + MLT1I LTR MaLR 3 215 -194 518 258 60 56 chr9 3875472 3876047 -113986580 - L1ME3A LINE L1 -3518 2864 2287 344 290 44 47 chr9 3876033 3876630 -113985997 - HAL1b LINE L1 -885 1165 1077 * 236 286 60 23 chr9 3877497 3877630 -113984997 - L1M4 LINE L1 -1978 4168 4031 1227 42 56 0 chr9 3877936 3878080 -113984547 - L1PA8 LINE L1 -14 6158 6007 290 276 81 0 chr9 3879704 3879791 -113982836 - MIR SINE MIR -77 185 92 188 348 73 39 chr9 3880159 3880337 -113982290 + MIR3 SINE MIR 15 198 -10 2861 72 119 5 chr9 3880345 3880747 -113981880 - LTR7 LTR ERV1 -2 448 1 2254 107 62 16 chr9 3880747 3881120 -113981507 - HERVH LTR ERV1 0 7713 7324 1390 134 19 0 chr9 3881120 3881336 -113981291 - HERVH LTR ERV1 -1894 5819 5600 3808 145 2 2 chr9 3881340 3881912 -113980715 - HERVH LTR ERV1 -2567 5146 4575 1334 104 0 0 chr9 3881909 3882092 -113980535 - HERVH LTR ERV1 -3043 4670 4488 * 6451 69 2 2 chr9 3882094 3882948 -113979679 - HERVH LTR ERV1 -3720 3993 3140 * 16180 92 21 25 chr9 3882934 3885810 -113976817 - HERVH LTR ERV1 -4721 2992 1 2638 73 128 5 chr9 3885812 3886211 -113976416 - LTR7 LTR ERV1 -2 448 1 2491 248 65 44 chr9 3886848 3887525 -113975102 - MER115 DNA AcHobo 0 693 3 213 39 0 0 chr9 3888031 3888057 -113974570 + (CA)n Simple_repeat Simple_repeat 2 27 0 360 0 0 0 chr9 3888129 3888169 -113974458 + (TG)n Simple_repeat Simple_repeat 1 40 0 401 306 91 39 chr9 3888482 3888714 -113973913 + LTR16A LTR ERVL 201 444 -6 310 184 0 105 chr9 3888805 3888881 -113973746 + L2 LINE L2 3246 3313 0 2435 162 77 46 chr9 3889398 3889986 -113972641 - L1MB4 LINE L1 -6 6174 5569 528 239 34 0 chr9 3890047 3890164 -113972463 - MER103 DNA DNA -44 122 2 295 239 27 133 chr9 3890339 3890527 -113972100 + L2 LINE L2 2917 3084 -188 371 266 40 102 chr9 3890607 3890784 -113971843 - MER5A DNA MER1_type -12 177 12 203 170 21 0 chr9 3890851 3890898 -113971729 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 185 234 0 0 chr9 3890902 3890949 -113971678 + MIR3 SINE MIR 121 167 -41 1545 176 54 57 chr9 3891916 3892252 -113970375 + MER58B DNA MER1_type 6 340 -1 1035 254 86 84 chr9 3892327 3892885 -113969742 - L1ME3A LINE L1 -75 6095 5537 234 0 0 0 chr9 3893056 3893082 -113969545 + (A)n Simple_repeat Simple_repeat 1 26 0 201 39 0 0 chr9 3893832 3893858 -113968769 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 21 0 0 0 chr9 3894366 3894387 -113968240 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 3894759 3894781 -113967846 + AT_rich Low_complexity Low_complexity 1 22 0 367 353 85 34 chr9 3898188 3898599 -113964028 - L2 LINE L2 -338 2976 2545 318 294 105 14 chr9 3899885 3900028 -113962599 + MIR SINE MIR 107 262 0 803 327 55 35 chr9 3900738 3901334 -113961293 + L1ME4a LINE L1 5309 5916 -205 847 192 66 6 chr9 3901435 3901617 -113961010 + MIR SINE MIR 7 199 -63 48 77 0 0 chr9 3901621 3901725 -113960902 + AT_rich Low_complexity Low_complexity 1 104 0 1135 168 73 0 chr9 3903791 3903982 -113958645 + MER3 DNA MER1_type 5 209 0 272 302 16 48 chr9 3905078 3905204 -113957423 + MIR SINE MIR 135 256 -6 376 301 62 0 chr9 3905274 3905387 -113957240 - L2 LINE L2 -34 3279 3160 5001 150 53 15 chr9 3906682 3907529 -113955098 + L1MC1 LINE L1 5449 6327 -6 618 278 0 13 chr9 3907542 3907693 -113954934 + L2 LINE L2 3165 3313 0 343 309 82 31 chr9 3908918 3909112 -113953515 - MIR SINE MIR -6 256 53 194 343 187 6 chr9 3909450 3909616 -113953011 + MIR SINE MIR 49 244 -18 375 245 68 54 chr9 3910767 3910914 -113951713 + MIR SINE MIR 6 154 -108 2042 130 0 0 chr9 3911637 3911922 -113950705 + AluSg SINE Alu 1 285 -25 223 265 163 31 chr9 3912086 3912184 -113950443 + MER5A DNA MER1_type 35 145 -44 238 237 51 17 chr9 3913012 3913071 -113949556 - L2 LINE L2 -3 3310 3250 551 300 119 83 chr9 3914246 3914766 -113947861 + L1MC4a LINE L1 5373 5677 -444 261 182 0 0 chr9 3915156 3915211 -113947416 + (CA)n Simple_repeat Simple_repeat 2 56 0 609 288 79 14 chr9 3915292 3915507 -113947120 + MIR SINE MIR 2 230 -32 284 278 121 10 chr9 3915737 3915850 -113946777 + MIR SINE MIR 28 159 -49 2044 129 0 0 chr9 3916347 3916678 -113945949 + AluSx SINE Alu 1 331 0 2385 92 0 3 chr9 3917664 3917978 -113944649 + AluSq SINE Alu 1 313 0 180 182 0 0 chr9 3918693 3918726 -113943901 - MIR SINE MIR -107 155 123 393 343 9 23 chr9 3918854 3919070 -113943557 + MLT1J LTR MaLR 217 429 -82 2178 119 0 3 chr9 3919071 3919366 -113943261 + AluSx SINE Alu 1 294 -18 280 287 47 62 chr9 3920120 3920418 -113942209 + L2 LINE L2 2785 3078 -194 2109 134 0 7 chr9 3921306 3921611 -113941016 + AluSx SINE Alu 1 303 -9 1735 168 25 14 chr9 3922371 3922656 -113939971 + AluJo SINE Alu 1 288 -24 247 350 121 7 chr9 3922846 3922986 -113939641 - L2 LINE L2 -2 3311 3156 208 331 221 17 chr9 3922982 3923163 -113939464 - MIR SINE MIR -13 249 32 * 399 191 56 0 chr9 3923184 3923273 -113939354 - L1ME4a LINE L1 -65 6056 5963 589 221 61 31 chr9 3923340 3923503 -113939124 - MER104 DNA Tc2 -4 176 9 233 254 111 71 chr9 3923613 3923739 -113938888 + L2 LINE L2 3142 3272 0 2308 86 0 26 chr9 3923986 3924289 -113938338 - AluY SINE Alu -16 295 1 219 339 95 37 chr9 3924925 3925114 -113937513 - L2 LINE L2 -122 3150 2951 459 0 0 0 chr9 3928796 3928847 -113933780 + (CA)n Simple_repeat Simple_repeat 2 52 0 2443 84 7 0 chr9 3929439 3929748 -113932879 + AluY SINE Alu 1 311 0 219 349 18 37 chr9 3930072 3930181 -113932446 + MIR SINE MIR 21 127 -135 508 306 79 24 chr9 3930238 3930490 -113932137 - L2 LINE L2 0 3313 3048 4583 72 19 60 chr9 3930741 3931409 -113931218 + L1PA10 LINE L1 5528 6168 0 324 273 127 11 chr9 3931533 3931651 -113930976 - MIR3 SINE MIR -3 205 73 295 291 87 44 chr9 3935573 3935779 -113926848 - L2 LINE L2 0 3313 3099 976 71 16 0 chr9 3935788 3935914 -113926713 + AluY SINE Alu 165 292 -19 983 275 83 48 chr9 3935938 3936537 -113926090 - L2 LINE L2 -244 3069 2445 215 61 30 0 chr9 3936667 3936700 -113925927 + (TTG)n Simple_repeat Simple_repeat 2 35 0 399 113 0 0 chr9 3937160 3937222 -113925405 + (TG)n Simple_repeat Simple_repeat 1 62 0 476 300 52 67 chr9 3938353 3938563 -113924064 + L2 LINE L2 3030 3236 -36 252 0 0 0 chr9 3938711 3938739 -113923888 + (TG)n Simple_repeat Simple_repeat 2 29 0 229 367 69 49 chr9 3939182 3939487 -113923140 - L2 LINE L2 -47 3225 2915 2086 177 61 34 chr9 3939639 3939868 -113922759 + L1MA4A LINE L1 2729 2950 -3353 2177 134 19 46 chr9 3939868 3940240 -113922387 - THE1B LTR MaLR 0 364 3 12426 98 4 4 chr9 3940242 3941823 -113920804 - THE1B-int LTR MaLR 0 1580 1 1913 150 33 46 chr9 3941825 3942192 -113920435 - THE1B LTR MaLR -2 362 1 2086 177 61 34 chr9 3942192 3942998 -113919629 + L1MA4A LINE L1 2950 6121 -182 462 189 0 27 chr9 3943009 3943120 -113919507 + L1MA4A LINE L1 6195 6302 -1 5099 168 38 15 chr9 3943416 3944259 -113918368 + MER21B LTR ERV1 1 862 -1 1210 237 18 85 chr9 3945547 3946041 -113916586 + L1MC4 LINE L1 7431 7891 -151 410 176 12 0 chr9 3946079 3946164 -113916463 + GA-rich Low_complexity Low_complexity 2 87 0 187 146 49 0 chr9 3946279 3946320 -113916307 + GA-rich Low_complexity Low_complexity 2 44 0 280 205 27 98 chr9 3946321 3946433 -113916194 + L1MC4 LINE L1 7939 8042 0 260 267 11 33 chr9 3946464 3946554 -113916073 - MIR SINE MIR -136 126 39 252 321 83 90 chr9 3947042 3947619 -113915008 + L2 LINE L2 2271 2843 -471 356 399 70 38 chr9 3947675 3948016 -113914611 + L2 LINE L2 2916 3267 -5 246 308 66 0 chr9 3951676 3951767 -113910860 - L2 LINE L2 -3 3269 3173 229 239 0 0 chr9 3951872 3951918 -113910709 - LTR16C LTR ERVL -257 234 189 223 245 19 0 chr9 3954120 3954173 -113908454 - MER5A DNA MER1_type -127 62 9 326 300 0 58 chr9 3954294 3954414 -113908213 - MIR SINE MIR -116 146 34 424 220 165 55 chr9 3955454 3955672 -113906955 + MIR SINE MIR 21 262 0 652 234 18 80 chr9 3959266 3959492 -113903135 - MER58C DNA MER1_type 0 215 4 427 291 200 0 chr9 3960131 3960306 -113902321 - MIR SINE MIR -19 243 34 212 0 36 0 chr9 3960353 3960381 -113902246 + (CAA)n Simple_repeat Simple_repeat 2 30 0 180 111 0 0 chr9 3960701 3960728 -113901899 + (GGA)n Simple_repeat Simple_repeat 3 29 0 1641 170 28 28 chr9 3961036 3961324 -113901303 + AluJo SINE Alu 13 300 -12 1127 101 63 0 chr9 3962561 3962720 -113899907 - L1PA13 LINE L1 -10 6153 5985 815 131 12 101 chr9 3963312 3963480 -113899147 + MER5A DNA MER1_type 23 175 -14 2142 110 0 13 chr9 3965989 3966289 -113896338 + AluSx SINE Alu 3 298 -14 27 29 0 0 chr9 3967039 3967073 -113895554 + AT_rich Low_complexity Low_complexity 1 34 0 651 319 129 21 chr9 3969331 3969758 -113892869 - L2 LINE L2 -2 3311 2839 243 266 138 83 chr9 3969803 3970246 -113892381 + L1ME LINE L1 5352 5818 -303 703 217 32 28 chr9 3970681 3970898 -113891729 + LTR7 LTR ERV1 233 450 0 747 251 55 5 chr9 3970920 3971119 -113891508 - MER63A DNA MER1_type -1 209 1 466 161 301 0 chr9 3972191 3972334 -113890293 - MER5A DNA MER1_type -2 187 2 813 247 171 28 chr9 3973183 3973539 -113889088 - L2 LINE L2 0 3313 2907 1480 168 33 97 chr9 3973722 3974146 -113888481 + MLT2C1 LTR ERVL 1 397 0 270 333 207 0 chr9 3974338 3974488 -113888139 - MIR SINE MIR -80 182 2 2272 67 0 58 chr9 3974580 3974893 -113887734 - AluY SINE Alu -16 295 1 954 289 179 39 chr9 3975530 3976243 -113886384 - L2 LINE L2 -239 3074 2247 342 0 0 0 chr9 3977209 3977247 -113885380 + (CA)n Simple_repeat Simple_repeat 2 39 0 496 248 117 9 chr9 3977258 3977472 -113885155 + LTR16A1 LTR ERVL 217 453 -4 407 359 37 23 chr9 3977707 3977924 -113884703 - L3 LINE CR1 -19 1558 1339 219 36 0 0 chr9 3978296 3978324 -113884303 + (T)n Simple_repeat Simple_repeat 1 28 0 771 154 70 6 chr9 3979397 3979553 -113883074 + MER3 DNA MER1_type 1 166 -43 279 240 60 130 chr9 3979588 3979788 -113882839 - L3 LINE CR1 -99 1478 1293 1565 203 7 11 chr9 3979932 3980234 -113882393 - AluJo SINE Alu 0 312 13 402 297 61 12 chr9 3980292 3980457 -113882170 + MIR SINE MIR 76 248 -14 308 309 127 27 chr9 3980455 3980675 -113881952 - L3 LINE CR1 -369 1208 967 * 446 48 0 16 chr9 3980684 3980746 -113881881 + (TTCC)n Simple_repeat Simple_repeat 1 61 0 346 320 0 10 chr9 3980750 3980850 -113881777 - L2 LINE L2 -18 3295 3197 549 316 47 19 chr9 3981209 3981421 -113881206 + MIR SINE MIR 36 253 -9 463 273 80 17 chr9 3981574 3981750 -113880877 + MIR SINE MIR 6 192 -70 1770 158 0 67 chr9 3983732 3984062 -113878565 - AluJo SINE Alu -4 308 1 1492 199 130 31 chr9 3987888 3988304 -113874323 + LTR40b LTR ERVL 3 459 -3 353 333 44 7 chr9 3988851 3988986 -113873641 + MIR3 SINE MIR 5 144 -64 374 0 0 0 chr9 3988987 3989030 -113873597 - L1PA13 LINE L1 -211 5952 5910 * 1538 99 37 4 chr9 3989005 3989292 -113873335 + L1PA13 LINE L1 5913 6207 0 2585 56 0 0 chr9 3989596 3989898 -113872729 - AluY SINE Alu -9 302 1 22 0 0 0 chr9 3990205 3990227 -113872400 + AT_rich Low_complexity Low_complexity 1 22 0 251 247 114 63 chr9 3990867 3991025 -113871602 - MIR SINE MIR -19 243 78 288 0 0 0 chr9 3991519 3991551 -113871076 + (CA)n Simple_repeat Simple_repeat 2 33 0 236 350 63 0 chr9 3991689 3991832 -113870795 + L1ME LINE L1 5669 5820 -301 645 327 156 21 chr9 3992280 3992754 -113869873 + L3 LINE CR1 47 584 -993 417 93 0 0 chr9 3993481 3993535 -113869092 + AluS SINE Alu 21 74 -238 2520 163 133 9 chr9 3995006 3995192 -113867435 + MER6A DNA MER2_type 1 163 -702 231 114 0 0 chr9 3995192 3995227 -113867400 + (TG)n Simple_repeat Simple_repeat 1 35 0 2520 163 133 9 chr9 3995227 3995573 -113867054 + MER6A DNA MER2_type 163 599 -6 2306 88 10 3 chr9 3995828 3996135 -113866492 - AluY SINE Alu -2 309 1 183 250 0 0 chr9 3996174 3996226 -113866401 + CT-rich Low_complexity Low_complexity 1 52 0 1934 118 33 26 chr9 3996226 3996530 -113866097 - AluSx SINE Alu -6 306 1 646 275 75 32 chr9 3996567 3996847 -113865780 + L2 LINE L2 3022 3313 0 266 267 33 22 chr9 3996979 3997069 -113865558 - MER103 DNA DNA -68 98 8 437 290 58 39 chr9 4001213 4001368 -113861259 + L3 LINE CR1 1417 1574 -3 1126 125 0 34 chr9 4002787 4002963 -113859664 - AluSq SINE Alu -19 294 125 207 0 0 0 chr9 4003300 4003323 -113859304 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 229 303 0 53 chr9 4003612 4003688 -113858939 - L2 LINE L2 -37 3276 3205 2335 110 3 0 chr9 4004004 4004314 -113858313 - AluSx SINE Alu -1 311 1 22 0 0 0 chr9 4005588 4005610 -113857017 + AT_rich Low_complexity Low_complexity 1 22 0 519 333 75 50 chr9 4009076 4009514 -113853113 + HAL1b LINE L1 236 684 -664 680 193 93 7 chr9 4010543 4010693 -113851934 + MER5A DNA MER1_type 2 164 -25 328 310 124 8 chr9 4010730 4010859 -113851768 + MER91B DNA MER1_type 46 189 -1 207 0 0 0 chr9 4010959 4010982 -113851645 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 739 70 18 26 chr9 4010984 4011098 -113851529 - L1HS LINE L1 -5 6150 6038 22 35 0 0 chr9 4011449 4011478 -113851149 + AT_rich Low_complexity Low_complexity 1 29 0 180 286 27 129 chr9 4012247 4012394 -113850233 + MER5A DNA MER1_type 48 179 -10 * 420 246 179 30 chr9 4012281 4012415 -113850212 - MER5A DNA MER1_type -32 157 4 1290 216 78 35 chr9 4014346 4014744 -113847883 - MSTB2 LTR MaLR 0 457 43 518 298 153 55 chr9 4015521 4015940 -113846687 + L2 LINE L2 2810 3269 -3 232 224 20 0 chr9 4018464 4018513 -113844114 + MIR SINE MIR 212 261 -1 532 219 16 24 chr9 4018546 4018669 -113843958 - MIR SINE MIR -105 157 36 198 294 15 44 chr9 4019276 4019344 -113843283 + L2 LINE L2 3246 3311 -2 1250 307 115 7 chr9 4019523 4020259 -113842368 + L2 LINE L2 2251 3061 -211 35 24 0 0 chr9 4021182 4021224 -113841403 + AT_rich Low_complexity Low_complexity 1 42 0 465 50 0 0 chr9 4021447 4021507 -113841120 + (CA)n Simple_repeat Simple_repeat 2 61 0 265 250 62 0 chr9 4022133 4022197 -113840430 + L2 LINE L2 3179 3246 -26 412 240 10 21 chr9 4022402 4022498 -113840129 - MER5A DNA MER1_type -84 105 11 324 0 0 0 chr9 4023366 4023402 -113839225 + (TC)n Simple_repeat Simple_repeat 2 37 0 243 0 0 0 chr9 4023401 4023428 -113839199 + (TA)n Simple_repeat Simple_repeat 2 28 0 * 219 152 0 0 chr9 4023439 4023485 -113839142 + (CA)n Simple_repeat Simple_repeat 1 46 0 183 290 120 50 chr9 4023802 4023902 -113838725 - MIR SINE MIR -60 148 42 276 100 0 0 chr9 4025636 4025676 -113836951 + (A)n Simple_repeat Simple_repeat 1 40 0 252 0 0 0 chr9 4026235 4026263 -113836364 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 216 306 88 64 chr9 4027894 4028135 -113834492 - MIR3 SINE MIR -14 248 1 327 355 57 21 chr9 4028179 4028320 -113834307 - L2 LINE L2 -5 3267 3122 1905 168 0 42 chr9 4028658 4029039 -113833588 + MLT1A1 LTR MaLR 1 365 0 459 301 106 17 chr9 4029041 4029277 -113833350 + L2 LINE L2 2699 2955 -359 1506 138 6 114 chr9 4029366 4029477 -113833150 + MLT1B LTR MaLR 69 190 -200 1985 116 53 0 chr9 4029477 4029762 -113832865 + AluSx SINE Alu 1 300 -12 1506 138 6 114 chr9 4029762 4030011 -113832616 + MLT1B LTR MaLR 190 390 0 494 286 79 26 chr9 4030029 4030218 -113832409 + L2 LINE L2 3115 3313 0 1780 173 0 46 chr9 4031530 4031854 -113830773 + AluJo SINE Alu 1 309 -3 181 352 0 70 chr9 4034547 4034618 -113828009 + MIR SINE MIR 32 97 -165 2432 82 3 0 chr9 4034791 4035097 -113827530 - AluSx SINE Alu -1 311 5 258 291 12 47 chr9 4035539 4035625 -113827002 + MER5A DNA MER1_type 6 88 -101 433 262 21 48 chr9 4035686 4035831 -113826796 + L2 LINE L2 3171 3311 -2 2009 78 81 3 chr9 4036121 4036405 -113826222 + AluSx SINE Alu 1 306 -6 620 235 31 15 chr9 4036412 4036608 -113826019 - L1MB7 LINE L1 -10 6174 5976 237 33 0 0 chr9 4036619 4036649 -113825978 + (A)n Simple_repeat Simple_repeat 1 30 0 2282 117 3 0 chr9 4036830 4037138 -113825489 + AluSx SINE Alu 2 310 -2 253 321 6 13 chr9 4037234 4037393 -113825234 + L1MC4a LINE L1 5775 5932 -1876 261 259 74 30 chr9 4038263 4038398 -113824229 - L1ME3A LINE L1 -5 6165 6025 450 165 132 0 chr9 4040167 4040258 -113822369 + MER20 DNA MER1_type 116 218 -1 656 161 0 32 chr9 4040559 4040745 -113821882 + GA-rich Low_complexity Low_complexity 1 180 0 1228 243 118 17 chr9 4042606 4043014 -113819613 - MER77 LTR ERV1 -3 602 154 239 210 170 30 chr9 4043056 4043156 -113819471 - MER77 LTR ERV1 -438 167 54 432 0 0 0 chr9 4046403 4046451 -113816176 + (A)n Simple_repeat Simple_repeat 1 48 0 258 286 97 45 chr9 4047946 4048215 -113814412 - L1ME3A LINE L1 -117 6004 5722 245 260 10 30 chr9 4048220 4048320 -113814307 + (TA)n Simple_repeat Simple_repeat 1 98 0 1010 152 73 0 chr9 4048515 4048706 -113813921 - MER2 DNA MER2_type -134 211 7 288 219 0 14 chr9 4049093 4049166 -113813461 + MIR SINE MIR 61 132 -130 217 231 29 77 chr9 4049135 4049239 -113813388 + L2 LINE L2 2993 3091 -181 * 442 272 76 86 chr9 4049369 4049659 -113812968 - L2 LINE L2 -3 3310 3024 314 239 97 18 chr9 4049920 4050033 -113812594 - MIR3 SINE MIR -76 132 11 186 43 0 0 chr9 4050421 4050444 -113812183 + (TTC)n Simple_repeat Simple_repeat 2 24 0 287 229 324 17 chr9 4051063 4051242 -113811385 + L2 LINE L2 3008 3241 -31 2313 113 25 19 chr9 4052638 4053000 -113809627 + THE1B LTR MaLR 1 364 0 4878 99 4 3 chr9 4053000 4053708 -113808919 + THE1B-int LTR MaLR 1 709 -871 4350 102 16 0 chr9 4053706 4054324 -113808303 + THE1B-int LTR MaLR 953 1580 0 * 1348 141 16 25 chr9 4054324 4054566 -113808061 + THE1B LTR MaLR 1 240 -124 1331 133 14 9 chr9 4054559 4054777 -113807850 + THE1B LTR MaLR 146 364 0 * 26 0 0 0 chr9 4054828 4054854 -113807773 + AT_rich Low_complexity Low_complexity 1 26 0 1732 164 7 18 chr9 4054855 4055141 -113807486 - AluJb SINE Alu -29 283 1 3230 195 52 46 chr9 4056321 4057113 -113805514 + L1MD2 LINE L1 653 1439 -4967 2302 107 16 0 chr9 4057113 4057421 -113805206 + AluSq SINE Alu 1 313 0 3230 195 52 46 chr9 4057421 4057663 -113804964 + L1MD2 LINE L1 1439 1678 -4728 580 144 18 0 chr9 4057663 4057774 -113804853 - L1MA9 LINE L1 -4 6308 6196 3230 195 52 46 chr9 4057774 4058056 -113804571 + L1MD2 LINE L1 1678 1949 -4457 4378 202 50 13 chr9 4058213 4059753 -113802874 + L1MD2 LINE L1 5009 6595 -24 2562 59 0 0 chr9 4061377 4061683 -113800944 - AluY SINE Alu -5 306 1 216 91 23 45 chr9 4063163 4063207 -113799420 + (TATATG)n Simple_repeat Simple_repeat 5 47 0 333 268 89 8 chr9 4063360 4063483 -113799144 - L1ME4a LINE L1 -241 5880 5748 760 212 118 6 chr9 4063654 4063824 -113798803 - MER5A DNA MER1_type 0 189 1 269 106 64 0 chr9 4063845 4063892 -113798735 + U5 snRNA snRNA 1 50 -66 812 308 68 51 chr9 4064442 4065670 -113796957 + L1MDa LINE L1 4 1252 -4867 380 338 125 10 chr9 4065707 4066043 -113796584 + L1MDa LINE L1 1407 1691 -863 652 307 92 10 chr9 4066219 4066730 -113795897 + L1ME3A LINE L1 2958 3510 -2636 2218 71 7 24 chr9 4066759 4067054 -113795573 + AluSp SINE Alu 1 290 -23 266 0 0 29 chr9 4067059 4067094 -113795533 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 317 258 207 35 chr9 4067194 4067652 -113794975 + L1ME3A LINE L1 3712 4248 -1898 1212 290 67 41 chr9 4067696 4069125 -113793502 - L1MC4 LINE L1 -864 6944 5479 742 286 52 44 chr9 4069132 4069650 -113792977 + L1ME3A LINE L1 4325 4846 -1300 547 289 35 39 chr9 4069674 4069986 -113792641 + L1ME3A LINE L1 5647 5957 -213 22 70 0 0 chr9 4070167 4070210 -113792417 + AT_rich Low_complexity Low_complexity 1 43 0 354 348 166 7 chr9 4070300 4070711 -113791916 + L2 LINE L2 2722 3186 -86 241 370 65 0 chr9 4070720 4070828 -113791799 - L2 LINE L2 -9 3263 3149 2339 166 67 34 chr9 4071652 4072129 -113790498 + MLT1D LTR MaLR 13 505 0 332 274 68 75 chr9 4072374 4072604 -113790023 + MLT1L LTR MaLR 107 391 -193 899 137 0 0 chr9 4072791 4072908 -113789719 + FLAM_C SINE Alu 1 117 -16 233 378 96 22 chr9 4073702 4073837 -113788790 - L2 LINE L2 -12 3260 3116 227 238 188 20 chr9 4074422 4074523 -113788104 - MIR SINE MIR -7 255 138 347 232 49 0 chr9 4074907 4074989 -113787638 + L1MC/D LINE L1 5567 5652 -469 294 273 10 20 chr9 4075017 4075116 -113787511 + (CATA)n Simple_repeat Simple_repeat 1 98 0 840 255 48 0 chr9 4075132 4075340 -113787287 + MIR SINE MIR 2 219 -43 303 217 83 24 chr9 4075390 4075492 -113787135 + L1MC/D LINE L1 5712 5820 -301 225 0 0 0 chr9 4075998 4076023 -113786604 + (A)n Simple_repeat Simple_repeat 1 25 0 364 332 93 21 chr9 4076260 4076453 -113786174 - MIR SINE MIR -36 226 20 523 303 40 34 chr9 4078476 4078651 -113783976 - MIR3 SINE MIR -21 187 12 585 188 255 0 chr9 4079674 4079823 -113782804 - MER20 DNA MER1_type -2 217 31 727 301 35 13 chr9 4079880 4080109 -113782518 + MIR SINE MIR 9 242 -20 285 310 41 47 chr9 4080134 4080305 -113782322 + MLT2E LTR ERVL 41 210 -418 228 304 29 29 chr9 4080428 4080530 -113782097 + MLT2E LTR ERVL 520 621 -7 193 269 39 39 chr9 4080977 4081055 -113781572 - L2 LINE L2 -52 3220 3143 211 364 50 8 chr9 4081865 4081986 -113780641 + L2 LINE L2 3146 3271 -1 2158 122 0 0 chr9 4082453 4082748 -113779879 - AluSq SINE Alu 0 313 19 187 265 0 20 chr9 4083236 4083285 -113779342 + L2 LINE L2 3213 3260 -12 206 264 0 83 chr9 4083589 4083661 -113778966 + MER91A DNA MER1_type 2 67 -129 1935 184 38 63 chr9 4083991 4084448 -113778179 + MLT1C LTR MaLR 6 467 0 352 284 9 18 chr9 4084448 4084557 -113778070 - MIR3 SINE MIR -42 166 59 313 271 148 63 chr9 4084583 4084867 -113777760 - L2 LINE L2 -1 3312 3005 2353 101 0 3 chr9 4085299 4085606 -113777021 + AluSx SINE Alu 1 306 -6 212 147 0 0 chr9 4087836 4087870 -113774757 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 203 263 11 63 chr9 4088976 4089071 -113773556 - MIR SINE MIR -133 129 40 796 239 73 121 chr9 4089153 4089414 -113773213 - L2 LINE L2 -6 3307 3078 1509 164 21 76 chr9 4089414 4089744 -113772883 - AluJo SINE Alu 0 312 1 796 239 73 121 chr9 4089744 4089963 -113772664 - L2 LINE L2 -235 3078 2850 293 0 27 0 chr9 4089982 4090019 -113772608 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 294 73 0 0 chr9 4090843 4090884 -113771743 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 448 290 27 39 chr9 4091783 4091974 -113770653 - MIR SINE MIR -25 237 46 2020 224 50 32 chr9 4092212 4092778 -113769849 + L1ME1 LINE L1 5584 6159 -7 25 31 0 0 chr9 4092840 4092872 -113769755 + AT_rich Low_complexity Low_complexity 1 32 0 339 222 81 40 chr9 4093481 4093580 -113769047 + MER5C DNA MER1_type 21 123 -201 240 192 0 0 chr9 4093724 4093776 -113768851 + MER5C DNA MER1_type 270 321 -3 387 316 121 16 chr9 4094448 4094638 -113767989 + L2 LINE L2 3016 3225 -47 2161 108 7 10 chr9 4094660 4094966 -113767661 + AluSx SINE Alu 1 305 -7 2099 121 0 0 chr9 4095074 4095379 -113767248 - AluSc SINE Alu -4 305 1 189 0 0 0 chr9 4096221 4096242 -113766385 + (TCTA)n Simple_repeat Simple_repeat 1 21 0 321 292 186 6 chr9 4096510 4096671 -113765956 - MIR SINE MIR -48 214 25 204 40 0 0 chr9 4096697 4096722 -113765905 + (GGGAGA)n Simple_repeat Simple_repeat 1 25 0 494 273 74 51 chr9 4097828 4098044 -113764583 + MIR SINE MIR 28 248 -14 652 232 82 1 chr9 4098190 4098405 -113764222 - L1ME3A LINE L1 -7 6155 5929 7132 109 34 9 chr9 4099014 4100407 -113762220 - L1MA1 LINE L1 -4 6298 4863 4186 168 42 9 chr9 4100592 4101355 -113761272 + L1MB5 LINE L1 5386 6173 -1 40 37 0 0 chr9 4102131 4102185 -113760442 + AT_rich Low_complexity Low_complexity 1 54 0 2408 70 3 3 chr9 4102546 4102846 -113759781 - AluY SINE Alu -11 300 1 324 366 41 0 chr9 4102847 4102970 -113759657 - MER115 DNA AcHobo -175 518 391 740 345 9 4 chr9 4103019 4103248 -113759379 - MER115 DNA AcHobo -413 280 51 425 264 28 9 chr9 4103253 4103359 -113759268 + MER5A DNA MER1_type 7 114 -75 234 0 0 0 chr9 4103558 4103584 -113759043 + (A)n Simple_repeat Simple_repeat 1 26 0 1347 201 30 30 chr9 4103655 4103923 -113758704 + AluJb SINE Alu 23 290 -22 451 311 122 31 chr9 4104821 4105043 -113757584 - MIR SINE MIR -20 242 1 313 307 62 22 chr9 4106678 4106857 -113755770 + MIR SINE MIR 21 206 -56 710 285 60 4 chr9 4106929 4107161 -113755466 + MIR SINE MIR 2 252 -10 347 0 23 0 chr9 4107235 4107278 -113755349 + (CA)n Simple_repeat Simple_repeat 1 44 0 475 328 39 6 chr9 4109199 4109379 -113753248 - MIR3 SINE MIR -3 205 20 598 209 99 41 chr9 4110551 4110723 -113751904 + MER5A DNA MER1_type 1 182 -7 249 151 19 38 chr9 4110833 4110886 -113751741 - MER5B DNA MER1_type 0 178 127 630 233 5 87 chr9 4110887 4111093 -113751534 + MER20 DNA MER1_type 31 219 0 2808 139 90 25 chr9 4111321 4111845 -113750782 + LTR64 LTR ERVK 1 558 0 2084 103 3 14 chr9 4115039 4115330 -113747297 - AluSg SINE Alu -22 288 1 1284 335 159 23 chr9 4115505 4116623 -113746004 + L3 LINE CR1 105 1374 -203 2151 148 56 8 chr9 4116714 4117072 -113745555 + THE1C LTR MaLR 1 375 0 234 349 70 0 chr9 4117281 4117367 -113745260 - L2 LINE L2 -48 3224 3133 7177 52 1 1 chr9 4119303 4120303 -113742324 + L1PA6 LINE L1 5161 6154 0 2972 177 34 16 chr9 4122017 4122627 -113740000 - L1MB5 LINE L1 -9 6165 5545 1884 163 7 3 chr9 4122648 4122942 -113739685 - AluSx SINE Alu -17 295 1 455 232 20 0 chr9 4123189 4123288 -113739339 + L2 LINE L2 3141 3241 -31 22 0 0 0 chr9 4123397 4123419 -113739208 + AT_rich Low_complexity Low_complexity 1 22 0 286 321 47 0 chr9 4123904 4124010 -113738617 + L2 LINE L2 3188 3298 -15 210 262 24 24 chr9 4126275 4126359 -113736268 + GA-rich Low_complexity Low_complexity 1 84 0 576 221 15 113 chr9 4126538 4126733 -113735894 - MER91B DNA MER1_type -14 176 1 834 230 6 11 chr9 4126863 4127041 -113735586 + MER45A DNA AcHobo 1 177 -1 732 268 114 21 chr9 4128155 4128396 -113734231 - L1MCc LINE L1 -4889 1534 1242 2343 87 0 7 chr9 4128396 4128705 -113733922 + AluY SINE Alu 5 311 0 732 268 114 21 chr9 4128705 4128848 -113733779 - L1MCc LINE L1 -5181 1242 1114 234 0 0 0 chr9 4129498 4129524 -113733103 + (TG)n Simple_repeat Simple_repeat 1 26 0 * 411 21 0 0 chr9 4129523 4129571 -113733056 + (GA)n Simple_repeat Simple_repeat 1 48 0 231 103 73 0 chr9 4130085 4130153 -113732474 + T-rich Low_complexity Low_complexity 3 75 0 210 37 0 0 chr9 4130153 4130180 -113732447 + (G)n Simple_repeat Simple_repeat 1 27 0 205 286 0 0 chr9 4130209 4130279 -113732348 + G-rich Low_complexity Low_complexity 1 70 0 358 249 83 5 chr9 4130372 4130531 -113732096 - L1 LINE L1 -2945 3201 3027 192 47 47 23 chr9 4130531 4130574 -113732053 + (TTTTTG)n Simple_repeat Simple_repeat 4 47 0 1948 58 8 0 chr9 4130574 4130835 -113731792 - L1PA5 LINE L1 -153 6001 5739 418 252 49 34 chr9 4131800 4131992 -113730635 + MIR SINE MIR 17 205 -57 2370 89 0 7 chr9 4132003 4132306 -113730321 + AluY SINE Alu 1 301 -10 268 277 18 9 chr9 4132763 4132875 -113729752 + L1 LINE L1 3796 3908 -2238 442 325 101 38 chr9 4133403 4133769 -113728858 + L1 LINE L1 4790 5178 -968 1300 132 10 29 chr9 4133908 4134112 -113728515 + AluSx SINE Alu 44 243 -69 309 345 81 43 chr9 4134248 4134457 -113728170 + L3 LINE CR1 48 264 -1313 596 252 5 48 chr9 4135960 4136166 -113726461 + LTR41 LTR ERVL 1 197 -576 21 95 0 0 chr9 4136557 4136620 -113726007 + AT_rich Low_complexity Low_complexity 1 63 0 25 65 0 0 chr9 4136627 4136673 -113725954 + AT_rich Low_complexity Low_complexity 1 46 0 304 203 63 0 chr9 4136674 4136753 -113725874 + LTR50 LTR ERVL 712 795 0 324 286 71 42 chr9 4137186 4137497 -113725130 + HAL1b LINE L1 399 718 -630 216 97 0 0 chr9 4138184 4138215 -113724412 + (TG)n Simple_repeat Simple_repeat 2 32 0 298 281 39 55 chr9 4138278 4138406 -113724221 - MIR3 SINE MIR -10 198 73 273 197 0 0 chr9 4139838 4139904 -113722723 + (TG)n Simple_repeat Simple_repeat 1 66 0 205 171 0 24 chr9 4139942 4139983 -113722644 + (TG)n Simple_repeat Simple_repeat 2 41 0 190 222 111 16 chr9 4142002 4142065 -113720562 - L3 LINE CR1 -1204 373 305 334 320 79 28 chr9 4142642 4142820 -113719807 - MER5A DNA MER1_type -1 188 2 384 204 82 61 chr9 4143092 4143239 -113719388 + MIR SINE MIR 103 252 -10 281 313 37 37 chr9 4144205 4144339 -113718288 - MIR3 SINE MIR -9 199 66 185 0 40 0 chr9 4144448 4144473 -113718154 + (CAA)n Simple_repeat Simple_repeat 2 27 0 666 185 37 0 chr9 4144473 4144608 -113718019 + L1MA10 LINE L1 6180 6319 -15 2060 83 3 31 chr9 4144644 4144957 -113717670 + AluY SINE Alu 1 305 0 1476 228 19 60 chr9 4144990 4145517 -113717110 + L1ME2 LINE L1 5665 6333 -1 360 379 52 6 chr9 4145591 4145765 -113716862 + L3 LINE CR1 893 1074 -503 1669 183 0 7 chr9 4146132 4146422 -113716205 + AluJb SINE Alu 1 288 -24 333 320 26 16 chr9 4146491 4146685 -113715942 - L1ME LINE L1 -353 5768 5573 369 291 99 7 chr9 4146689 4146840 -113715787 + L3 LINE CR1 1092 1256 -321 370 240 132 8 chr9 4146930 4147059 -113715568 + LTR50 LTR ERVL 12 156 -639 563 171 257 22 chr9 4147089 4147320 -113715307 + LTR50 LTR ERVL 228 634 -161 394 145 72 0 chr9 4147353 4147436 -113715191 + LTR50 LTR ERVL 705 793 -2 201 392 21 10 chr9 4147438 4147535 -113715092 + L3 LINE CR1 1435 1532 -45 205 330 121 0 chr9 4148617 4148708 -113713919 - MIR SINE MIR -102 160 59 201 74 0 0 chr9 4149102 4149129 -113713498 + (A)n Simple_repeat Simple_repeat 1 27 0 368 256 13 0 chr9 4149580 4149658 -113712969 - L2 LINE L2 0 3272 3194 1407 187 33 19 chr9 4149662 4150026 -113712601 - MER96B DNA MER1_type? 0 417 49 504 227 143 14 chr9 4150700 4151016 -113711611 + MLT1J2 LTR MaLR 63 450 0 343 195 93 8 chr9 4152610 4152728 -113709899 - MER117 DNA MER1_type -23 174 47 237 402 0 8 chr9 4152793 4152910 -113709717 - MIR3 SINE MIR -16 192 77 351 0 0 0 chr9 4153590 4153629 -113708998 + (CA)n Simple_repeat Simple_repeat 2 40 0 2258 139 38 12 chr9 4155039 4155456 -113707171 + MSTA LTR MaLR 1 428 0 373 327 108 75 chr9 4155623 4155984 -113706643 + L2 LINE L2 2900 3272 0 201 222 19 19 chr9 4157600 4157654 -113704973 + GA-rich Low_complexity Low_complexity 1 54 0 204 303 40 61 chr9 4157729 4157828 -113704799 + L2 LINE L2 3168 3264 -8 303 319 42 25 chr9 4158076 4158195 -113704432 - L2 LINE L2 -4 3309 3189 24 0 0 0 chr9 4158934 4158958 -113703669 + AT_rich Low_complexity Low_complexity 1 24 0 1516 166 69 42 chr9 4159012 4159301 -113703326 + AluJo SINE Alu 1 297 -15 23 0 0 0 chr9 4159920 4159943 -113702684 + AT_rich Low_complexity Low_complexity 1 23 0 204 296 0 42 chr9 4160076 4160147 -113702480 + MIR SINE MIR 14 81 -181 566 274 121 21 chr9 4160349 4160539 -113702088 + MIR SINE MIR 4 212 -50 1717 172 0 40 chr9 4160541 4160843 -113701784 + AluJo SINE Alu 1 290 -22 21 36 0 0 chr9 4160914 4160942 -113701685 + AT_rich Low_complexity Low_complexity 1 28 0 198 143 0 0 chr9 4160981 4161016 -113701611 + (CA)n Simple_repeat Simple_repeat 2 36 0 395 169 96 0 chr9 4161036 4161119 -113701508 - Tigger3b DNA MER2_type 0 1232 1142 973 98 93 27 chr9 4161128 4161311 -113701316 + THE1C LTR MaLR 181 375 0 * 5083 132 56 33 chr9 4161311 4161621 -113701006 - Tigger3b DNA MER2_type -2008 1020 719 2062 84 0 4 chr9 4161621 4161882 -113700745 - AluY SINE Alu -13 298 39 5083 132 56 33 chr9 4161882 4162568 -113700059 - Tigger3b DNA MER2_type -2309 719 1 831 172 28 0 chr9 4162580 4162725 -113699902 - MIR SINE MIR -112 150 2 24 32 0 0 chr9 4163242 4163273 -113699354 + AT_rich Low_complexity Low_complexity 1 31 0 311 282 26 43 chr9 4163704 4163821 -113698806 + L1ME LINE L1 5448 5562 -559 2281 79 9 3 chr9 4164361 4164691 -113697936 - L1MA5A LINE L1 0 6297 5966 485 284 102 49 chr9 4165220 4165445 -113697182 - MIR SINE MIR -6 256 20 1938 142 0 0 chr9 4166198 4166507 -113696120 + AluSx SINE Alu 1 309 0 1675 153 63 137 chr9 4168619 4169123 -113693504 - MLT1C LTR MaLR 0 467 1 293 211 9 114 chr9 4169407 4169521 -113693106 + MIR SINE MIR 90 191 -71 294 294 104 51 chr9 4170531 4170736 -113691891 + MIR SINE MIR 9 212 -50 871 225 18 31 chr9 4171912 4172134 -113690493 + MER20 DNA MER1_type 1 219 0 25 0 0 0 chr9 4172167 4172192 -113690435 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr9 4172696 4172717 -113689910 + AT_rich Low_complexity Low_complexity 1 21 0 1737 244 175 38 chr9 4173448 4174293 -113688334 + L2 LINE L2 2064 3022 -291 632 222 26 31 chr9 4176708 4176902 -113685725 + MLT1J2 LTR MaLR 1 193 -257 230 239 256 26 chr9 4176929 4177046 -113685581 + MLT1J2 LTR MaLR 266 409 -41 287 196 0 72 chr9 4177317 4177414 -113685213 - L1MC5 LINE L1 -30 7931 7842 390 325 149 48 chr9 4179193 4179608 -113683019 + L2 LINE L2 2816 3272 0 330 294 71 8 chr9 4179651 4179777 -113682850 - MER94 DNA DNA 0 134 1 21 36 0 0 chr9 4181351 4181379 -113681248 + AT_rich Low_complexity Low_complexity 1 28 0 556 194 276 0 chr9 4181947 4182081 -113680546 + MER5B DNA MER1_type 6 176 -2 402 328 67 36 chr9 4182545 4183011 -113679616 - L1ME3 LINE L1 -238 5924 5445 358 308 122 65 chr9 4187434 4187957 -113674670 - L1M2 LINE L1 -5481 1368 816 198 286 36 36 chr9 4188722 4188778 -113673849 - L2 LINE L2 -12 3260 3205 193 349 45 0 chr9 4190844 4190910 -113671717 + L2 LINE L2 3235 3303 -10 378 0 0 0 chr9 4191089 4191131 -113671496 + (CA)n Simple_repeat Simple_repeat 2 43 0 648 266 87 57 chr9 4192656 4193347 -113669280 + L1ME4a LINE L1 5415 6119 -2 223 260 117 0 chr9 4194261 4194338 -113668289 - MIR SINE MIR -66 142 57 234 105 0 0 chr9 4195086 4195124 -113667503 + (TG)n Simple_repeat Simple_repeat 2 39 0 21 36 0 0 chr9 4195665 4195693 -113666934 + AT_rich Low_complexity Low_complexity 1 28 0 206 300 29 0 chr9 4196661 4196731 -113665896 - MIR SINE MIR -79 129 58 459 218 143 0 chr9 4197408 4197555 -113665072 - MER104 DNA Tc2 -3 177 10 344 311 0 30 chr9 4197598 4197733 -113664894 + L2 LINE L2 2936 3066 -206 263 261 148 106 chr9 4198659 4198801 -113663826 + MIR SINE MIR 2 149 -113 2562 116 57 7 chr9 4198816 4199223 -113663404 + MSTA LTR MaLR 1 427 -1 8671 166 23 4 chr9 4199225 4200826 -113661801 + MSTA-int LTR MaLR 15 1645 -6 2432 142 54 5 chr9 4200831 4201239 -113661388 + MSTA LTR MaLR 1 428 0 285 307 59 50 chr9 4201239 4201340 -113661287 + MIR SINE MIR 161 262 0 23 0 0 0 chr9 4201511 4201534 -113661093 + AT_rich Low_complexity Low_complexity 1 23 0 240 320 68 19 chr9 4202039 4202142 -113660485 - L2 LINE L2 -24 3248 3141 279 213 12 25 chr9 4202189 4202269 -113660358 - MER116 DNA Mariner -1 79 1 654 214 26 7 chr9 4202310 4202464 -113660163 + MIR SINE MIR 50 206 -56 362 214 401 6 chr9 4202640 4202822 -113659805 - L1MC4 LINE L1 -146 7896 7643 777 190 107 19 chr9 4202957 4203162 -113659465 + MIR SINE MIR 13 235 -27 450 0 0 0 chr9 4203294 4203344 -113659283 + (CA)n Simple_repeat Simple_repeat 2 51 0 278 250 48 73 chr9 4203900 4204059 -113658568 + MIR SINE MIR 49 212 -50 23 0 0 0 chr9 4204688 4204711 -113657916 + AT_rich Low_complexity Low_complexity 1 23 0 324 261 26 17 chr9 4205885 4206000 -113656627 + MER103 DNA DNA 4 119 -47 262 225 31 132 chr9 4206308 4206437 -113656190 - MER5B DNA MER1_type 0 178 63 846 238 8 10 chr9 4208065 4208295 -113654332 + MIR SINE MIR 20 247 -15 195 237 0 0 chr9 4208766 4208804 -113653823 + L2 LINE L2 3231 3268 -4 1678 138 43 72 chr9 4209066 4209413 -113653214 - MER1B DNA MER1_type 0 337 1 1593 165 0 0 chr9 4209568 4209822 -113652805 + AluJb SINE Alu 59 312 0 2300 99 0 3 chr9 4210265 4210568 -113652059 - AluSq SINE Alu -11 302 1 21 0 0 0 chr9 4212111 4212132 -113650495 + AT_rich Low_complexity Low_complexity 1 21 0 2068 150 23 51 chr9 4212541 4212701 -113649926 - L1MA9 LINE L1 0 6312 6149 180 77 0 0 chr9 4212701 4212727 -113649900 + (TG)n Simple_repeat Simple_repeat 2 27 0 2068 150 23 51 chr9 4212727 4212753 -113649874 - L1MA9 LINE L1 -163 6149 6124 2489 75 7 0 chr9 4212753 4213060 -113649567 + AluSx SINE Alu 1 309 -3 2068 150 23 51 chr9 4213060 4213305 -113649322 - L1MA9 LINE L1 -188 6124 5892 197 226 28 19 chr9 4215152 4215258 -113647369 + CT-rich Low_complexity Low_complexity 2 108 0 22 0 0 0 chr9 4217284 4217306 -113645321 + AT_rich Low_complexity Low_complexity 1 22 0 215 275 52 136 chr9 4217690 4218116 -113644511 + L2 LINE L2 2859 3248 -24 201 156 0 0 chr9 4218570 4218602 -113644025 + (CTA)n Simple_repeat Simple_repeat 1 32 0 327 285 85 15 chr9 4218662 4218792 -113643835 - MIR SINE MIR -14 248 110 180 111 0 0 chr9 4219319 4219346 -113643281 + (ATG)n Simple_repeat Simple_repeat 2 28 0 185 250 0 0 chr9 4219972 4220016 -113642611 + L2 LINE L2 3212 3255 -17 620 270 55 0 chr9 4220168 4220331 -113642296 - MIR3 SINE MIR -3 205 34 226 269 224 13 chr9 4221675 4221831 -113640796 + L3 LINE CR1 1370 1558 -19 345 288 54 18 chr9 4221958 4222069 -113640558 + MIR3 SINE MIR 83 197 -11 371 269 234 19 chr9 4222121 4222418 -113640209 + L1ME4a LINE L1 4224 4596 -1550 960 200 41 45 chr9 4222418 4222638 -113639989 - MER20 DNA MER1_type 0 219 1 371 269 234 19 chr9 4222638 4222660 -113639967 + L1ME4a LINE L1 4596 4612 -1534 2085 133 0 0 chr9 4222750 4223036 -113639591 + AluSx SINE Alu 1 286 -26 1143 276 100 39 chr9 4223258 4223819 -113638808 - MLT1G1 LTR MaLR 0 595 1 301 292 118 6 chr9 4223923 4224084 -113638543 + L1ME4a LINE L1 5120 5298 -848 335 254 62 68 chr9 4224325 4224502 -113638125 + L1ME4a LINE L1 5736 5911 -210 824 185 21 48 chr9 4225176 4225365 -113637262 - MER5A DNA MER1_type -5 184 1 788 189 7 7 chr9 4226324 4226467 -113636160 + MER5A DNA MER1_type 1 143 -46 519 337 71 68 chr9 4228158 4228568 -113634059 - L2 LINE L2 -65 3248 2838 218 287 130 37 chr9 4228597 4228705 -113633922 + L2 LINE L2 3151 3268 -4 2299 122 0 0 chr9 4228905 4229216 -113633411 + AluSx SINE Alu 1 311 -1 1407 156 30 117 chr9 4230430 4230763 -113631864 + AluJo SINE Alu 1 304 -8 28 0 0 0 chr9 4230765 4230793 -113631834 + AT_rich Low_complexity Low_complexity 1 28 0 1494 192 39 111 chr9 4231045 4231144 -113631483 - MLT1C LTR MaLR 0 467 362 2050 110 10 36 chr9 4231144 4231452 -113631175 - AluSx SINE Alu -10 302 3 1494 192 39 111 chr9 4231452 4231846 -113630781 - MLT1C LTR MaLR -105 362 10 2168 89 26 13 chr9 4232046 4232350 -113630277 + AluY SINE Alu 1 308 -3 254 320 117 16 chr9 4232533 4232661 -113629966 - MIR3 SINE MIR -32 176 36 279 133 0 0 chr9 4232713 4232758 -113629869 + (CA)n Simple_repeat Simple_repeat 1 45 0 388 335 90 13 chr9 4232817 4232972 -113629655 - MIR3 SINE MIR -12 196 30 425 347 78 25 chr9 4233037 4233279 -113629348 + MIR SINE MIR 2 256 -6 2377 95 0 0 chr9 4234627 4234932 -113627695 + AluSq SINE Alu 1 305 -8 316 297 124 59 chr9 4235146 4235436 -113627191 - L2 LINE L2 -961 2353 2045 515 320 117 17 chr9 4235456 4235687 -113626940 + MIR SINE MIR 8 261 -1 250 316 175 18 chr9 4235972 4236143 -113626484 + MIR3 SINE MIR 4 201 -7 285 250 174 45 chr9 4236555 4236687 -113625940 - MIR3 SINE MIR -30 178 30 225 268 73 12 chr9 4236861 4236943 -113625684 - MIR SINE MIR -13 249 163 376 306 54 0 chr9 4236950 4237061 -113625566 + L2 LINE L2 3153 3269 -3 249 333 8 58 chr9 4237065 4237185 -113625442 - MIR SINE MIR -121 141 28 282 95 0 0 chr9 4237647 4237689 -113624938 + (CA)n Simple_repeat Simple_repeat 2 43 0 273 309 0 24 chr9 4238879 4238963 -113623664 + MIR SINE MIR 17 98 -110 1527 187 50 39 chr9 4238982 4239341 -113623286 + L1MC4 LINE L1 7680 8042 0 218 136 45 0 chr9 4242065 4242109 -113620518 + (TGAA)n Simple_repeat Simple_repeat 2 47 0 515 300 17 11 chr9 4242365 4242545 -113620082 - Charlie8 DNA MER1_type -2215 202 22 369 0 0 0 chr9 4243030 4243071 -113619556 + (CA)n Simple_repeat Simple_repeat 2 42 0 891 174 34 0 chr9 4243079 4243228 -113619399 - AluJb SINE Alu -21 291 138 267 103 0 0 chr9 4243382 4243421 -113619206 + (CA)n Simple_repeat Simple_repeat 2 40 0 497 303 85 0 chr9 4245260 4245425 -113617202 - MIR SINE MIR -37 225 47 378 268 72 14 chr9 4245687 4245825 -113616802 - L1ME4a LINE L1 -12 6109 5964 269 303 0 91 chr9 4245974 4246085 -113616542 - L1ME4a LINE L1 -344 5777 5686 2147 137 0 0 chr9 4246085 4246392 -113616235 - AluSq SINE Alu -6 307 1 269 303 0 91 chr9 4246392 4246455 -113616172 - L1ME4a LINE L1 -435 5686 5619 396 0 0 0 chr9 4246599 4246643 -113615984 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 190 293 207 0 chr9 4246812 4246870 -113615757 + MIR SINE MIR 37 106 -102 30 0 0 0 chr9 4248338 4248368 -113614259 + AT_rich Low_complexity Low_complexity 1 30 0 326 220 230 0 chr9 4248891 4248991 -113613636 - MER94 DNA DNA -3 131 9 2318 95 0 0 chr9 4249096 4249391 -113613236 + AluSx SINE Alu 1 295 -17 268 251 137 69 chr9 4249842 4250017 -113612610 + MIR SINE MIR 65 251 -11 245 219 114 49 chr9 4250960 4251083 -113611544 + LTR67 LTR ERVL 2 132 -425 * 404 259 126 74 chr9 4251076 4251489 -113611138 + MLT1H LTR MaLR 52 547 -2 274 170 0 21 chr9 4251741 4251788 -113610839 + Charlie8 DNA MER1_type 231 276 -2141 229 158 0 26 chr9 4252179 4252217 -113610410 - MLT1F LTR MaLR -504 38 2 228 279 14 40 chr9 4252350 4252438 -113610189 - MIR SINE MIR -55 153 68 245 333 130 25 chr9 4252553 4252715 -113609912 + L3 LINE CR1 1204 1382 -195 389 288 68 8 chr9 4253003 4253135 -113609492 + MIR3 SINE MIR 49 188 -20 1886 226 51 31 chr9 4254430 4254930 -113607697 - L1ME1 LINE L1 -5 6161 5651 342 256 0 43 chr9 4255023 4255140 -113607487 - LTR33 LTR ERVL 0 521 410 547 333 0 6 chr9 4255224 4255404 -113607223 - LTR33 LTR ERVL -307 214 36 27380 32 3 1 chr9 4255473 4259367 -113603260 - L1PA3 LINE L1 -3 6152 2247 11270 48 1 1 chr9 4259368 4260752 -113601875 + L1PA3 LINE L1 854 2237 -3909 388 157 43 0 chr9 4260754 4260824 -113601803 + HsTC2 DNA Tc2 1823 1895 -3 31 0 0 0 chr9 4261336 4261367 -113601260 + AT_rich Low_complexity Low_complexity 1 31 0 207 114 0 0 chr9 4262088 4262123 -113600504 + (CATG)n Simple_repeat Simple_repeat 1 35 0 186 250 0 0 chr9 4262277 4262333 -113600294 + A-rich Low_complexity Low_complexity 1 56 0 423 346 118 36 chr9 4262340 4262622 -113600005 - L2 LINE L2 -340 2974 2717 1460 192 96 16 chr9 4262622 4262934 -113599693 + MER58B DNA MER1_type 5 341 0 423 346 118 36 chr9 4262934 4263208 -113599419 - L2 LINE L2 -597 2717 2372 511 309 22 45 chr9 4263289 4263512 -113599115 + Tigger8 DNA MER2_type 46 263 -403 207 0 0 0 chr9 4263513 4263536 -113599091 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2124 95 3 11 chr9 4263544 4263828 -113598799 - AluSx SINE Alu -30 282 1 21 0 0 0 chr9 4263916 4263937 -113598690 + AT_rich Low_complexity Low_complexity 1 21 0 3925 156 2 2 chr9 4263986 4264596 -113598031 + L1PA16 LINE L1 25 634 -6215 6745 155 101 87 chr9 4264596 4266267 -113596360 + pTR5 LTR ERV1 745 2438 0 13646 188 12 47 chr9 4266269 4271322 -113591305 + L1PA16 LINE L1 628 5857 -1012 1827 140 4 11 chr9 4271322 4271600 -113591027 + AluSx SINE Alu 1 276 -36 2078 88 0 28 chr9 4271600 4271883 -113590744 - AluY SINE Alu 0 311 37 13646 188 12 47 chr9 4271883 4271895 -113590732 + L1PA16 LINE L1 5856 5867 -1002 295 40 20 20 chr9 4271895 4271945 -113590682 + (TAAAA)n Simple_repeat Simple_repeat 2 51 0 13646 188 12 47 chr9 4271945 4272911 -113589716 + L1PA16 LINE L1 5867 6310 -559 406 129 14 0 chr9 4272911 4272979 -113589648 + L1PA10 LINE L1 6094 6164 -4 3131 129 33 25 chr9 4273020 4273572 -113589055 + L1PA16 LINE L1 6305 6860 -9 297 322 70 39 chr9 4273599 4273857 -113588770 + Tigger8 DNA MER2_type 398 663 -3 1975 117 21 3 chr9 4274104 4274394 -113588233 + AluSq SINE Alu 1 295 -18 1829 115 15 8 chr9 4274402 4274662 -113587965 + AluSx SINE Alu 39 300 -12 584 236 98 94 chr9 4274723 4275224 -113587403 + MLT1K LTR MaLR 38 540 -48 183 80 0 0 chr9 4275437 4275462 -113587165 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 446 322 17 51 chr9 4277034 4277270 -113585357 - MIR SINE MIR -26 236 9 249 275 55 55 chr9 4278617 4278708 -113583919 - MIR3 SINE MIR -36 172 82 368 266 65 30 chr9 4278750 4278919 -113583708 + MER20B DNA MER1_type 5 179 -604 964 173 99 15 chr9 4279152 4279354 -113583273 - MER20 DNA MER1_type 0 219 1 359 200 35 35 chr9 4279500 4279585 -113583042 + L2 LINE L2 3227 3311 -2 2779 196 47 7 chr9 4281027 4281640 -113580987 + L1MB8 LINE L1 5526 6163 -15 727 288 86 70 chr9 4281835 4282498 -113580129 - L2 LINE L2 0 3272 2596 280 271 106 40 chr9 4282636 4282787 -113579840 + L2 LINE L2 2927 3087 -185 1019 174 68 0 chr9 4282910 4283100 -113579527 + MER3 DNA MER1_type 6 208 -1 324 322 51 8 chr9 4283100 4283218 -113579409 + L2 LINE L2 3191 3313 0 392 340 106 7 chr9 4283258 4283399 -113579228 - L2 LINE L2 0 3313 3159 315 71 0 0 chr9 4284783 4284825 -113577802 + (TG)n Simple_repeat Simple_repeat 2 43 0 2362 88 0 25 chr9 4285659 4285976 -113576651 + AluY SINE Alu 1 309 -2 25 0 0 0 chr9 4286790 4286815 -113575812 + AT_rich Low_complexity Low_complexity 1 25 0 505 288 118 9 chr9 4287512 4287741 -113574886 + L2 LINE L2 2339 2592 -722 2428 56 17 0 chr9 4287758 4288046 -113574581 - AluY SINE Alu -18 293 1 879 160 32 21 chr9 4288048 4288236 -113574391 + MER3 DNA MER1_type 16 205 -4 378 301 156 6 chr9 4288353 4288526 -113574101 + L2 LINE L2 3111 3309 -4 2702 190 134 40 chr9 4289298 4290081 -113572546 + L1MC4 LINE L1 6701 7573 -469 530 197 30 53 chr9 4290081 4290213 -113572414 + FLAM_A SINE Alu 2 130 -3 2702 190 134 40 chr9 4290213 4290286 -113572341 + L1MC4 LINE L1 7573 7638 -404 1002 164 0 0 chr9 4290301 4290453 -113572174 + AluJb SINE Alu 131 282 -30 180 0 0 0 chr9 4290453 4290473 -113572154 + (TTAA)n Simple_repeat Simple_repeat 4 23 0 800 167 0 147 chr9 4290547 4290825 -113571802 + L1MC4 LINE L1 7819 7995 0 180 329 0 57 chr9 4292589 4292659 -113569968 - MIR3 SINE MIR -42 166 101 225 201 91 0 chr9 4292718 4292783 -113569844 + MIR SINE MIR 36 111 -97 314 353 10 0 chr9 4293644 4293746 -113568881 + MIR3 SINE MIR 85 187 -21 22 56 0 0 chr9 4294427 4294463 -113568164 + AT_rich Low_complexity Low_complexity 1 36 0 439 261 6 72 chr9 4294485 4294655 -113567972 - MIR SINE MIR -49 213 56 216 333 128 8 chr9 4295758 4295875 -113566752 + L2 LINE L2 3141 3271 -1 484 285 40 47 chr9 4296107 4296343 -113566284 + MIR SINE MIR 20 257 -5 192 77 0 0 chr9 4297667 4297693 -113564934 + (A)n Simple_repeat Simple_repeat 1 26 0 377 269 0 0 chr9 4298476 4298584 -113564043 + L1MC4a LINE L1 5809 5916 -1892 24 32 0 0 chr9 4299634 4299665 -113562962 + AT_rich Low_complexity Low_complexity 1 31 0 376 269 75 78 chr9 4300353 4300394 -113562233 + L1MDa LINE L1 1157 1197 -5343 905 207 12 0 chr9 4300394 4300558 -113562069 + FRAM SINE Alu 1 166 0 376 269 75 78 chr9 4300558 4300784 -113561843 + L1MDa LINE L1 1197 1423 -5117 230 259 147 42 chr9 4300854 4300997 -113561630 + L1MDa LINE L1 1490 1647 -4883 250 266 72 0 chr9 4301120 4301259 -113561368 + HAL1b LINE L1 437 1669 -785 1917 164 0 16 chr9 4301564 4301881 -113560746 + AluJo SINE Alu 1 312 0 243 297 72 9 chr9 4301949 4302060 -113560567 + MIR SINE MIR 65 182 -80 8877 124 21 9 chr9 4302810 4304244 -113558383 - Tigger1 DNA MER2_type -967 1451 1 220 231 0 0 chr9 4304266 4304305 -113558322 - MIR SINE MIR -146 116 78 2183 97 0 10 chr9 4304485 4304785 -113557842 + AluSc SINE Alu 1 297 -12 348 127 0 0 chr9 4305653 4305708 -113556919 + (A)n Simple_repeat Simple_repeat 1 55 0 274 190 69 0 chr9 4306146 4306204 -113556423 - L2 LINE L2 -2 3311 3250 480 270 103 88 chr9 4306490 4306946 -113555681 + L1ME4a LINE L1 5517 5979 -142 1806 23 0 0 chr9 4308410 4308627 -113554000 - L1PA4 LINE L1 -255 5900 5684 1430 6 12 6 chr9 4308629 4308798 -113553829 + L1PA4 LINE L1 5986 6155 0 2216 129 3 40 chr9 4309590 4309940 -113552687 - MER1B DNA MER1_type 0 337 1 952 57 0 0 chr9 4310215 4310337 -113552290 + L1PA13 LINE L1 6036 6157 -6 201 121 0 0 chr9 4310416 4310449 -113552178 + (TG)n Simple_repeat Simple_repeat 2 34 0 1021 160 41 78 chr9 4310797 4311090 -113551537 + L1MA4 LINE L1 6016 6297 -3 1901 161 0 22 chr9 4311135 4311452 -113551175 - AluSx SINE Alu -2 310 1 1028 162 80 51 chr9 4312113 4312427 -113550200 + MER33 DNA MER1_type 1 323 -1 243 146 0 0 chr9 4312848 4312889 -113549738 + (CA)n Simple_repeat Simple_repeat 2 42 0 245 243 122 27 chr9 4313054 4313128 -113549499 + L3b LINE CR1 1198 1278 -305 233 402 37 0 chr9 4313144 4313251 -113549376 + L3b LINE CR1 1412 1522 -61 2286 120 0 3 chr9 4314043 4314344 -113548283 - AluSq SINE Alu -13 300 1 730 101 34 0 chr9 4315143 4315262 -113547365 + L1MA5 LINE L1 6176 6298 -2 747 130 130 0 chr9 4315563 4315686 -113546941 + AluSg SINE Alu 1 139 -171 3649 170 89 60 chr9 4366677 4367656 -113494971 + MER51B-int LTR ERV1 6809 7815 -1 2079 109 112 3 chr9 4367658 4367998 -113494629 + MER51B LTR ERV1 1 377 0 592 133 0 0 chr9 4367998 4368081 -113494546 + U6 snRNA snRNA 19 101 -6 182 37 37 0 chr9 4368130 4368157 -113494470 + (TAAAAA)n Simple_repeat Simple_repeat 5 32 0 1027 38 25 19 chr9 4368657 4368815 -113493812 + (TTTC)n Simple_repeat Simple_repeat 2 160 0 983 130 0 7 chr9 4368916 4369062 -113493565 - AluSq/x SINE Alu -168 145 1 25 31 0 0 chr9 4369842 4369874 -113492753 + AT_rich Low_complexity Low_complexity 1 32 0 249 254 0 0 chr9 4369900 4369971 -113492656 + GA-rich Low_complexity Low_complexity 2 72 0 3467 142 22 5 chr9 4371288 4371921 -113490706 - L1 LINE L1 -1286 6279 5636 1371 117 5 33 chr9 4371921 4372134 -113490493 + AluSp SINE Alu 90 296 -17 6566 201 15 38 chr9 4372149 4373068 -113489559 - L1 LINE L1 -1929 5636 4697 2379 103 3 0 chr9 4373068 4373378 -113489249 - AluSp SINE Alu -1 312 2 6566 201 15 38 chr9 4373378 4374759 -113487868 - L1 LINE L1 -2868 4697 3369 332 305 80 40 chr9 4374882 4375082 -113487545 + L2 LINE L2 2609 2816 -498 578 176 61 53 chr9 4375439 4375570 -113487057 + MER45 DNA AcHobo 2 133 -1448 * 956 183 27 40 chr9 4375563 4375787 -113486840 + MER74B LTR ERVL 55 275 -347 23 0 0 0 chr9 4375803 4375826 -113486801 + AT_rich Low_complexity Low_complexity 1 23 0 199 380 62 0 chr9 4376146 4376259 -113486368 + L2 LINE L2 3144 3263 -9 299 313 91 0 chr9 4376547 4376646 -113485981 + MER5B DNA MER1_type 1 108 -70 2010 88 4 0 chr9 4376994 4377244 -113485383 - AluSg SINE Alu -59 251 1 352 264 86 46 chr9 4378139 4378336 -113484291 - L1ME4a LINE L1 -211 5910 5706 2191 100 20 13 chr9 4380111 4380239 -113482388 + AluSc SINE Alu 1 127 -182 2301 106 0 6 chr9 4380239 4380551 -113482076 + AluSg SINE Alu 1 310 0 2191 100 20 13 chr9 4380551 4380723 -113481904 + AluSc SINE Alu 127 303 -6 512 152 13 0 chr9 4380827 4380906 -113481721 + MER33 DNA MER1_type 1 80 -244 216 309 30 19 chr9 4381286 4381435 -113481192 + GA-rich Low_complexity Low_complexity 3 243 0 324 0 0 0 chr9 4383441 4383477 -113479150 + (TG)n Simple_repeat Simple_repeat 2 37 0 2432 65 0 7 chr9 4383855 4384175 -113478452 + AluY SINE Alu 1 311 0 433 267 103 10 chr9 4385094 4385282 -113477345 - MIR SINE MIR -39 223 23 248 310 110 3 chr9 4385342 4385459 -113477168 + MIR SINE MIR 3 128 -80 240 286 114 19 chr9 4385548 4385653 -113476974 + MLT1K LTR MaLR 97 211 -377 387 236 21 64 chr9 4385661 4385801 -113476826 + MLT1L LTR MaLR 147 280 -335 1243 146 41 18 chr9 4386159 4386378 -113476249 - AluJo SINE Alu -3 309 86 14972 89 13 1 chr9 4387211 4389263 -113473364 - L1P LINE L1 -1423 4723 2646 3698 162 25 7 chr9 4389881 4390475 -113472152 + MER6A DNA MER2_type 1 605 0 378 298 149 0 chr9 4390752 4390893 -113471734 - MER5B DNA MER1_type -16 162 1 256 255 7 92 chr9 4391575 4391716 -113470911 + L1MC4 LINE L1 6476 6604 -1438 4165 222 139 10 chr9 4391732 4392935 -113469692 + L1MC3 LINE L1 6699 8014 -2 1517 157 16 12 chr9 4392987 4393242 -113469385 - AluJo SINE Alu -17 295 40 378 0 0 0 chr9 4393436 4393478 -113469149 + (TG)n Simple_repeat Simple_repeat 1 42 0 474 194 134 130 chr9 4393495 4393742 -113468885 + MER102a DNA MER1_type 77 324 -6 183 277 62 0 chr9 4393822 4393887 -113468740 + L2 LINE L2 2322 2390 -924 246 235 0 0 chr9 4394878 4394929 -113467698 + CT-rich Low_complexity Low_complexity 2 52 0 241 330 28 0 chr9 4395549 4395658 -113466969 + GA-rich Low_complexity Low_complexity 3 114 0 1908 125 15 0 chr9 4395782 4396046 -113466581 + AluSx SINE Alu 1 268 -44 218 342 94 8 chr9 4396191 4396308 -113466319 + MIR3 SINE MIR 31 157 -51 375 318 117 31 chr9 4396542 4396765 -113465862 - MIR SINE MIR -14 248 7 2287 83 0 49 chr9 4396789 4397116 -113465511 - AluY SINE Alu 0 311 1 2012 73 0 33 chr9 4397815 4398090 -113464537 + AluY SINE Alu 1 266 -45 31 0 0 0 chr9 4400749 4400780 -113461847 + AT_rich Low_complexity Low_complexity 1 31 0 190 310 40 60 chr9 4401224 4401324 -113461303 + MIR3 SINE MIR 89 186 -22 509 93 58 0 chr9 4402374 4402460 -113460167 - MSTB1 LTR MaLR -341 91 1 487 261 30 37 chr9 4402511 4402645 -113459982 + MER5A DNA MER1_type 57 189 0 332 267 64 41 chr9 4403024 4403196 -113459431 + L1ME4a LINE L1 5574 5749 -372 1167 253 67 75 chr9 4403199 4403705 -113458922 - MLT1J LTR MaLR -7 504 3 331 226 209 43 chr9 4403744 4403978 -113458649 + L1ME4a LINE L1 5803 6075 -46 219 186 0 0 chr9 4405120 4405163 -113457464 + GA-rich Low_complexity Low_complexity 1 43 0 1710 122 61 34 chr9 4405936 4406231 -113456396 - AluSg SINE Alu -7 303 1 1082 266 135 37 chr9 4406589 4407107 -113455520 + L2 LINE L2 1094 1662 -1652 5310 172 23 14 chr9 4407111 4408249 -113454378 - L1P LINE L1 -765 5381 4252 3686 98 7 19 chr9 4408247 4408312 -113454315 + L1PA15 LINE L1 5379 5443 -722 * 1827 148 3 14 chr9 4408312 4408615 -113454012 + AluJo SINE Alu 3 302 0 3686 98 7 19 chr9 4408615 4409086 -113453541 + L1PA15 LINE L1 5443 5910 -255 213 256 61 24 chr9 4409626 4409708 -113452919 - MER91C DNA MER1_type -23 117 33 2808 159 39 4 chr9 4410653 4411144 -113451483 - L1MB3 LINE L1 -3 6180 5673 3167 88 16 7 chr9 4411151 4411574 -113451053 - L1PA11 LINE L1 -3 6171 5745 956 237 11 0 chr9 4411720 4411906 -113450721 - MER5A DNA MER1_type -1 188 1 444 172 0 94 chr9 4411992 4412184 -113450443 + (AGGTG)n Simple_repeat Simple_repeat 2 175 0 1433 224 118 7 chr9 4412514 4412930 -113449697 - MLT1C LTR MaLR 0 467 6 352 338 8 72 chr9 4413161 4413424 -113449203 - L2 LINE L2 -191 3081 2836 477 356 18 18 chr9 4413446 4413671 -113448956 - L3 LINE CR1 -287 1290 1066 185 0 40 0 chr9 4414539 4414564 -113448063 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 451 193 83 121 chr9 4415184 4415449 -113447178 + MER112 DNA MER1_type 1 255 -1 213 220 40 0 chr9 4415977 4416027 -113446600 + CT-rich Low_complexity Low_complexity 3 54 0 225 371 86 9 chr9 4416912 4417028 -113445599 + L2 LINE L2 3187 3311 -2 196 336 8 50 chr9 4417427 4417546 -113445081 + MIR SINE MIR 32 145 -63 2138 122 0 0 chr9 4419251 4419539 -113443088 + AluSx SINE Alu 1 288 -24 448 204 106 18 chr9 4419554 4419667 -113442960 + Charlie4 DNA MER1_type 1839 1961 0 1385 170 15 26 chr9 4420003 4420268 -113442359 + L1PA13 LINE L1 5891 6152 -11 189 0 0 0 chr9 4420268 4420289 -113442338 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 2121 129 0 0 chr9 4420310 4420605 -113442022 + AluSx SINE Alu 1 295 -17 194 269 108 9 chr9 4420843 4420959 -113441668 + MIR SINE MIR 9 138 -70 618 247 159 18 chr9 4420961 4421188 -113441439 - MIR SINE MIR -3 259 1 180 0 0 0 chr9 4421836 4421856 -113440771 + (TAA)n Simple_repeat Simple_repeat 2 21 0 2166 132 0 16 chr9 4421856 4422167 -113440460 + AluSx SINE Alu 1 306 -6 445 260 253 4 chr9 4422432 4422713 -113439914 + L2 LINE L2 2303 2653 -661 284 279 13 0 chr9 4422714 4422793 -113439834 - MER116 DNA Mariner 0 80 1 628 310 48 85 chr9 4422798 4423411 -113439216 + L2 LINE L2 2660 3251 -21 338 304 152 23 chr9 4423511 4423682 -113438945 - MIR SINE MIR -50 212 20 243 0 0 0 chr9 4423688 4423715 -113438912 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 422 268 72 102 chr9 4423767 4424002 -113438625 - MER102b DNA MER1_type -11 330 103 763 276 30 42 chr9 4424985 4425184 -113437443 - MLT1J2 LTR MaLR 0 450 253 1383 175 0 43 chr9 4425184 4425222 -113437405 - MER58A DNA MER1_type -2196 224 186 2211 120 3 0 chr9 4425222 4425523 -113437104 + AluSq SINE Alu 1 302 -11 1383 175 0 43 chr9 4425523 4425718 -113436909 - MER58A DNA MER1_type -2234 186 1 763 276 30 42 chr9 4425718 4425783 -113436844 - MLT1J2 LTR MaLR -197 253 189 185 365 48 21 chr9 4426022 4426167 -113436460 - L2 LINE L2 -318 2954 2806 2073 132 0 22 chr9 4426288 4426606 -113436021 - AluSx SINE Alu 0 312 2 2077 157 0 0 chr9 4426809 4427121 -113435506 + AluSx SINE Alu 1 312 0 2234 103 0 3 chr9 4427474 4427775 -113434852 + AluSc SINE Alu 1 300 -9 322 295 156 64 chr9 4427896 4428191 -113434436 - L2 LINE L2 -17 3255 2934 189 171 0 0 chr9 4428242 4428277 -113434350 + (TGGA)n Simple_repeat Simple_repeat 3 37 0 2379 70 0 3 chr9 4429329 4429654 -113432973 + AluY SINE Alu 1 311 0 313 228 272 13 chr9 4429814 4429972 -113432655 + L1ME4a LINE L1 5670 5868 -253 2208 96 13 26 chr9 4430185 4430498 -113432129 + AluSq SINE Alu 1 309 -4 429 279 14 21 chr9 4431040 4431066 -113431561 - MIR SINE MIR -46 216 191 483 69 0 0 chr9 4431066 4431138 -113431489 + (TCTA)n Simple_repeat Simple_repeat 3 74 0 429 279 14 21 chr9 4431138 4431251 -113431376 - MIR SINE MIR -71 191 78 450 162 0 0 chr9 4431255 4431323 -113431304 + Tigger2 DNA MER2_type 2 69 -2649 * 2571 142 56 7 chr9 4431307 4431738 -113430889 + Tigger2 DNA MER2_type 2267 2718 0 196 271 0 0 chr9 4431758 4431806 -113430821 - MIR SINE MIR -208 54 7 2369 125 40 8 chr9 4432239 4432592 -113430035 + THE1B LTR MaLR 1 364 0 270 212 40 30 chr9 4432737 4432836 -113429791 - L1MEd LINE L1 -5029 1090 991 271 321 37 83 chr9 4433729 4433838 -113428789 + MIR SINE MIR 16 119 -89 2263 143 45 31 chr9 4434005 4434116 -113428511 - Tigger1 DNA MER2_type -1 2417 2309 1951 145 21 3 chr9 4434116 4434406 -113428221 + AluSx SINE Alu 1 295 -17 2263 143 45 31 chr9 4434406 4434713 -113427914 - Tigger1 DNA MER2_type -109 2309 1993 * 3164 285 65 0 chr9 4434707 4435353 -113427274 - Tigger1 DNA MER2_type -1687 731 44 1805 176 7 0 chr9 4435355 4435645 -113426982 + AluJo SINE Alu 3 294 -18 2324 100 0 13 chr9 4435838 4436138 -113426489 + AluSc SINE Alu 1 296 -13 1609 269 112 11 chr9 4436505 4436720 -113425907 - L2 LINE L2 0 3313 3121 183 80 0 0 chr9 4436720 4436745 -113425882 + (ATGGTG)n Simple_repeat Simple_repeat 3 27 0 1609 269 112 11 chr9 4436745 4436780 -113425847 - L2 LINE L2 -192 3121 3091 2021 106 0 35 chr9 4436780 4437063 -113425564 + AluSg SINE Alu 1 273 -37 1609 269 112 11 chr9 4437063 4437585 -113425042 - L2 LINE L2 -222 3091 2449 900 243 18 101 chr9 4437585 4437754 -113424873 - L2 LINE L2 -1148 2166 2037 1575 153 0 130 chr9 4437754 4438101 -113424526 + AluJb SINE Alu 1 302 -10 900 243 18 101 chr9 4438101 4438268 -113424359 - L2 LINE L2 -1277 2037 1858 19224 82 226 8 chr9 4439075 4442168 -113420459 + L1PA6 LINE L1 1635 5401 -745 3655 43 2 0 chr9 4442168 4442583 -113420044 + L1PA6 LINE L1 5730 6146 -8 750 162 58 104 chr9 4442766 4443025 -113419602 - L1MB8 LINE L1 -1 6177 5931 650 183 37 43 chr9 4443025 4443189 -113419438 - L1MA6 LINE L1 -232 6068 5906 1521 195 6 38 chr9 4443191 4443504 -113419123 - AluJb SINE Alu -9 303 1 10792 168 42 11 chr9 4443507 4445117 -113417510 - L1MA6 LINE L1 -783 5363 3670 1798 162 7 13 chr9 4445117 4445426 -113417201 - AluJb SINE Alu -5 307 1 10792 168 42 11 chr9 4445426 4445916 -113416711 - L1MA6 LINE L1 -2476 3670 3197 31 26 0 0 chr9 4446272 4446310 -113416317 + AT_rich Low_complexity Low_complexity 1 38 0 2210 125 0 6 chr9 4446310 4446621 -113416006 - AluSx SINE Alu -3 309 1 283 270 51 7 chr9 4446626 4446763 -113415864 - MER113 DNA MER1_type? -378 143 1 2051 141 0 3 chr9 4447192 4447505 -113415122 + AluSx SINE Alu 1 312 0 1188 86 0 7 chr9 4447515 4447667 -113414960 + L1MA1 LINE L1 6148 6298 -4 21 57 0 0 chr9 4447667 4447702 -113414925 + AT_rich Low_complexity Low_complexity 1 35 0 2438 235 37 7 chr9 4447902 4448574 -113414053 + L1M4 LINE L1 3161 3852 -2294 40447 74 9 2 chr9 4448585 4454693 -113407934 + L1PA6 LINE L1 1 6152 -2 347 257 77 11 chr9 4454672 4454855 -113407772 + L1M4 LINE L1 4166 4360 -1786 * 20138 39 10 2 chr9 4454956 4457676 -113404951 + L1P2 LINE L1 2915 5658 -497 247 258 16 0 chr9 4457975 4458037 -113404590 - MIR SINE MIR -123 139 77 224 298 162 10 chr9 4459404 4459602 -113403025 + L2 LINE L2 2094 2321 -993 997 280 22 19 chr9 4459682 4459950 -113402677 + MLT1H1 LTR MaLR 3 271 -284 214 29 57 0 chr9 4459995 4460030 -113402597 + (GA)n Simple_repeat Simple_repeat 1 37 0 216 67 0 0 chr9 4460114 4460144 -113402483 + (TAATG)n Simple_repeat Simple_repeat 3 32 0 350 384 21 11 chr9 4460156 4460346 -113402281 + L2 LINE L2 2566 2757 -557 180 111 0 0 chr9 4460376 4460403 -113402224 + (CCCCAA)n Simple_repeat Simple_repeat 6 32 0 1338 247 36 11 chr9 4460859 4461215 -113401412 - L1ME1 LINE L1 -24 6142 5778 2064 175 53 20 chr9 4461362 4462028 -113400599 - L1ME1 LINE L1 -744 5402 4849 906 198 0 18 chr9 4462032 4462199 -113400428 + FRAM SINE Alu 1 164 -12 2756 208 52 67 chr9 4462210 4462261 -113400366 - L1ME1 LINE L1 -1300 4846 4796 310 28 0 0 chr9 4462261 4462297 -113400330 - MADE1 DNA Mariner 0 80 45 2756 208 52 67 chr9 4462297 4462428 -113400199 - L1ME1 LINE L1 -1350 4796 4665 1946 146 20 3 chr9 4462428 4462730 -113399897 - AluJb SINE Alu -5 307 1 2756 208 52 67 chr9 4462730 4463351 -113399276 - L1ME1 LINE L1 -1481 4665 4019 306 0 0 0 chr9 4463360 4463394 -113399233 + (TG)n Simple_repeat Simple_repeat 2 35 0 2375 159 3 3 chr9 4463443 4463808 -113398819 + MLT1A1 LTR MaLR 1 365 0 638 269 60 96 chr9 4464122 4464569 -113398058 + MLT1K LTR MaLR 156 586 -2 1580 130 0 0 chr9 4464675 4464891 -113397736 - AluSx SINE Alu -96 216 1 264 257 14 14 chr9 4465072 4465146 -113397481 + L2 LINE L2 3195 3268 -4 224 282 15 84 chr9 4465382 4465513 -113397114 - L2 LINE L2 0 3272 3151 933 288 16 0 chr9 4465569 4465812 -113396815 - MIR SINE MIR -15 247 1 230 335 57 67 chr9 4465883 4466092 -113396535 - L2 LINE L2 -214 3058 2852 1230 239 38 35 chr9 4467180 4467548 -113395079 - MLT1J LTR MaLR 0 511 143 1581 164 36 22 chr9 4467607 4467882 -113394745 + AluJb SINE Alu 1 279 -33 260 290 220 5 chr9 4469215 4469401 -113393226 + L2 LINE L2 2921 3146 -167 2118 218 55 0 chr9 4469759 4470228 -113392399 - Charlie4a DNA MER1_type 0 508 14 217 233 178 0 chr9 4470280 4470353 -113392274 + L2 LINE L2 3227 3312 -1 498 116 0 0 chr9 4471332 4471401 -113391226 + MSTA LTR MaLR 360 428 0 281 221 163 0 chr9 4471414 4471500 -113391127 + MER113 DNA MER1_type? 295 394 -127 230 271 0 94 chr9 4471911 4471996 -113390631 + MER5B DNA MER1_type 3 79 -99 373 167 15 0 chr9 4472119 4472185 -113390442 + MSTA LTR MaLR 362 428 0 281 221 163 0 chr9 4472198 4472284 -113390343 + MER113 DNA MER1_type? 295 394 -127 287 224 0 94 chr9 4472696 4472781 -113389846 + MER5B DNA MER1_type 3 79 -99 2293 129 122 38 chr9 4472900 4473063 -113389564 + MSTA LTR MaLR 1 149 -279 2055 106 39 0 chr9 4473063 4473368 -113389259 - AluSx SINE Alu 0 312 1 2293 129 122 38 chr9 4473368 4473599 -113389028 + MSTA LTR MaLR 149 428 0 386 165 142 63 chr9 4473611 4473738 -113388889 + MER113 DNA MER1_type? 295 431 -90 1616 101 5 0 chr9 4474157 4474376 -113388251 - AluSg/x SINE Alu -10 302 83 439 272 146 0 chr9 4474769 4474927 -113387700 + MER20B DNA MER1_type 1 181 -602 693 323 81 9 chr9 4475075 4475419 -113387208 + L1MC/D LINE L1 5454 5822 -1986 2536 179 79 20 chr9 4475697 4475762 -113386865 + Tigger6a DNA MER2_type 390 450 -1147 1769 127 33 23 chr9 4475762 4476062 -113386565 + AluSg SINE Alu 1 303 -7 2536 179 79 20 chr9 4476062 4476594 -113386033 + Tigger6a DNA MER2_type 450 1022 -61 961 211 0 0 chr9 4476595 4476775 -113385852 - AluJb SINE Alu -2 310 131 190 148 37 0 chr9 4476840 4476894 -113385733 + (TA)n Simple_repeat Simple_repeat 2 57 0 29 47 0 0 chr9 4477057 4477100 -113385527 + AT_rich Low_complexity Low_complexity 1 43 0 2099 190 72 11 chr9 4477791 4478248 -113384379 - MER31A LTR ERV1 0 485 1 436 267 50 62 chr9 4478330 4478491 -113384136 - MIR SINE MIR -51 211 53 227 215 15 31 chr9 4479574 4479639 -113382988 - MIR SINE MIR -31 231 168 287 228 0 0 chr9 4479793 4479850 -113382777 - MLT1J2 LTR MaLR 0 450 394 1829 159 0 20 chr9 4481401 4481696 -113380931 + AluSx SINE Alu 1 289 -23 1492 133 27 5 chr9 4482379 4482647 -113379980 - LTR24C LTR ERV1 0 635 316 22 35 0 0 chr9 4482655 4482684 -113379943 + AT_rich Low_complexity Low_complexity 1 29 0 1731 110 16 0 chr9 4482684 4482929 -113379698 - L1MA2 LINE L1 0 6304 6056 2508 56 0 0 chr9 4482929 4483231 -113379396 - AluYa5 SINE Alu -9 302 1 710 181 95 0 chr9 4483902 4484018 -113378609 + FLAM_C SINE Alu 3 129 -14 241 261 15 0 chr9 4484071 4484136 -113378491 + (TTCA)n Simple_repeat Simple_repeat 4 69 0 183 292 0 97 chr9 4484330 4484402 -113378225 - L2 LINE L2 -332 2940 2876 205 348 22 0 chr9 4484432 4484524 -113378103 - L2 LINE L2 -484 2830 2737 2354 76 0 13 chr9 4485121 4485424 -113377203 - AluY SINE Alu -8 303 5 2756 186 117 41 chr9 4486310 4486918 -113375709 - MLT1E1 LTR MaLR 0 654 1 764 138 9 0 chr9 4487585 4487694 -113374933 - FLAM_C SINE Alu -11 132 23 262 290 54 21 chr9 4487699 4487885 -113374742 - L1MEd LINE L1 -3107 3022 2831 338 288 72 16 chr9 4487898 4488148 -113374479 - L1MEd LINE L1 -5043 1076 813 257 341 58 45 chr9 4488345 4488656 -113373971 - L1MEd LINE L1 -5555 564 250 1663 178 31 0 chr9 4488685 4488978 -113373649 + MSTB2 LTR MaLR 7 308 -149 30 27 0 0 chr9 4488983 4489020 -113373607 + AT_rich Low_complexity Low_complexity 1 37 0 1129 149 0 0 chr9 4489039 4489207 -113373420 + MSTB2 LTR MaLR 290 457 0 778 210 32 68 chr9 4489798 4490017 -113372610 + MIR SINE MIR 52 262 0 237 217 142 75 chr9 4490424 4490544 -113372083 - L2 LINE L2 -8 3305 3178 2349 131 16 31 chr9 4490795 4491176 -113371451 + THE1C LTR MaLR 1 375 0 247 241 17 0 chr9 4491308 4491366 -113371261 - MER5A DNA MER1_type -3 186 128 2520 78 0 0 chr9 4491368 4491676 -113370951 + AluY SINE Alu 1 308 -3 21 0 0 0 chr9 4492468 4492489 -113370138 + AT_rich Low_complexity Low_complexity 1 21 0 3755 170 20 27 chr9 4492504 4493271 -113369356 + L1MB7 LINE L1 5202 5969 -215 731 300 18 0 chr9 4493927 4494147 -113368480 + MIR SINE MIR 36 259 -3 1029 193 0 0 chr9 4495188 4495354 -113367273 + FRAM SINE Alu 1 166 0 2244 104 3 25 chr9 4495456 4495773 -113366854 - AluSx SINE Alu -2 310 1 515 179 36 0 chr9 4496264 4496376 -113366251 - L1 LINE L1 -2824 3322 3207 29 47 0 0 chr9 4496664 4496707 -113365920 + AT_rich Low_complexity Low_complexity 1 43 0 207 179 0 0 chr9 4497383 4497422 -113365205 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 201 281 53 61 chr9 4499133 4499247 -113363380 + MIR SINE MIR 99 211 -51 305 326 28 14 chr9 4499276 4499329 -113363298 - MIR3 SINE MIR -5 203 152 1901 164 0 22 chr9 4499329 4499647 -113362980 + AluJo SINE Alu 1 311 -1 305 326 28 14 chr9 4499647 4499737 -113362890 - MIR3 SINE MIR -56 152 58 699 295 52 33 chr9 4499837 4500108 -113362519 - Charlie8 DNA MER1_type -2141 276 1 1730 220 37 8 chr9 4500117 4500472 -113362155 + MLT1A1 LTR MaLR 1 365 0 2115 121 13 16 chr9 4500489 4500795 -113361832 - AluSx SINE Alu -7 305 1 190 379 38 15 chr9 4500795 4500927 -113361700 + L2 LINE L2 2776 2910 -404 1785 166 3 24 chr9 4501035 4501331 -113361296 - AluJo SINE Alu -19 293 4 726 243 0 0 chr9 4502017 4502153 -113360474 - FLAM_C SINE Alu -6 137 2 570 309 40 15 chr9 4502638 4502839 -113359788 + MLT1I LTR MaLR 1 206 -203 7826 169 13 26 chr9 4502955 4504377 -113358250 + L1P LINE L1 11 1414 -4732 288 211 14 0 chr9 4504481 4504552 -113358075 + L1MB3 LINE L1 4744 4815 -1331 565 185 0 11 chr9 4504552 4504644 -113357983 + AluJb SINE Alu 41 131 -181 709 250 92 8 chr9 4504680 4504940 -113357687 + L1MB3 LINE L1 4812 5093 -1053 1182 179 0 23 chr9 4504986 4505204 -113357423 - AluJb SINE Alu -13 299 87 976 177 0 11 chr9 4505275 4505456 -113357171 - AluSg/x SINE Alu -5 307 129 292 261 46 50 chr9 4505513 4505666 -113356961 + L1MB3 LINE L1 5257 5412 -753 708 212 54 163 chr9 4505731 4506203 -113356424 + L1MC4a LINE L1 5692 6101 -1707 848 157 0 30 chr9 4506203 4506337 -113356290 - FLAM_C SINE Alu -3 130 1 708 212 54 163 chr9 4506337 4506397 -113356230 + L1MC4a LINE L1 6101 6166 -1642 2318 108 0 0 chr9 4506643 4506950 -113355677 - AluSq SINE Alu -6 307 1 3455 128 67 92 chr9 4507143 4507711 -113354916 + L1MB3 LINE L1 5450 5996 -187 1943 148 3 3 chr9 4507711 4508002 -113354625 - AluJb SINE Alu -21 291 1 3455 128 67 92 chr9 4508002 4508184 -113354443 + L1MB3 LINE L1 5996 6181 -2 1572 227 108 83 chr9 4508184 4508620 -113354007 + L1MC5 LINE L1 6560 6984 -977 1936 112 21 17 chr9 4508620 4508907 -113353720 + AluSx SINE Alu 7 294 -18 1572 227 108 83 chr9 4508907 4509324 -113353303 + L1MC5 LINE L1 6984 7443 -518 27 0 0 0 chr9 4509336 4509363 -113353264 + AT_rich Low_complexity Low_complexity 1 27 0 383 147 0 29 chr9 4509377 4509445 -113353182 - AluJb SINE Alu -167 135 70 750 120 0 0 chr9 4509546 4509646 -113352981 + AluSg/x SINE Alu 187 286 -26 222 361 0 0 chr9 4510127 4510199 -113352428 + L2 LINE L2 2798 2869 -445 1217 124 36 26 chr9 4510499 4510692 -113351935 - AluJo SINE Alu -117 195 1 224 179 30 60 chr9 4510692 4510759 -113351868 + MIR SINE MIR 104 168 -94 180 255 21 0 chr9 4511141 4511188 -113351439 - L2 LINE L2 0 3272 3225 22 0 0 0 chr9 4511402 4511424 -113351203 + AT_rich Low_complexity Low_complexity 1 22 0 482 237 21 0 chr9 4511957 4512054 -113350573 - MER81 DNA DNA -14 100 2 1937 147 3 0 chr9 4512806 4513098 -113349529 + AluSx SINE Alu 1 293 -19 1969 152 7 7 chr9 4513433 4513743 -113348884 - AluSx SINE Alu -2 310 1 306 106 0 0 chr9 4513877 4513924 -113348703 + (TGAA)n Simple_repeat Simple_repeat 3 49 0 276 320 50 50 chr9 4514126 4514326 -113348301 - L2 LINE L2 -188 3084 2885 1287 192 5 0 chr9 4514419 4514638 -113347989 + AluJo SINE Alu 1 220 -92 738 263 40 11 chr9 4514638 4514813 -113347814 + AluJo SINE Alu 86 265 -47 25 0 0 0 chr9 4514841 4514866 -113347761 + AT_rich Low_complexity Low_complexity 1 25 0 44768 41 0 1 chr9 4514880 4521040 -113341587 - L1PA3 LINE L1 0 6155 2 246 205 0 0 chr9 4521857 4521896 -113340731 - AluJ/monomer SINE Alu -263 39 1 2439 82 3 0 chr9 4521918 4522223 -113340404 - AluSc SINE Alu -3 306 1 2347 91 0 3 chr9 4522249 4522547 -113340080 - AluSx SINE Alu -15 297 1 1180 183 76 55 chr9 4522550 4522840 -113339787 + L1MC4 LINE L1 6777 7072 -970 2224 237 94 5 chr9 4522854 4523462 -113339165 + L1MC4 LINE L1 7241 7902 -140 392 208 0 0 chr9 4523742 4523814 -113338813 + MER94 DNA DNA 2 73 -61 207 0 0 0 chr9 4524068 4524091 -113338536 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 266 335 73 35 chr9 4524094 4524354 -113338273 + L2 LINE L2 1914 2183 -1131 28 0 0 0 chr9 4524354 4524382 -113338245 + AT_rich Low_complexity Low_complexity 1 28 0 759 192 8 0 chr9 4524453 4524573 -113338054 - AluJb SINE Alu -190 122 2 429 278 23 8 chr9 4524600 4524733 -113337894 + L2 LINE L2 2225 2359 -955 1647 228 24 73 chr9 4524894 4525398 -113337229 + MLT2B1 LTR ERVL 1 479 -41 240 111 0 0 chr9 4525385 4525421 -113337206 + (CATATA)n Simple_repeat Simple_repeat 2 37 0 * 242 213 40 13 chr9 4525398 4525480 -113337147 + (CATA)n Simple_repeat Simple_repeat 1 84 0 312 89 54 54 chr9 4525438 4525519 -113337108 + MLT2D LTR ERVL 367 414 0 680 112 0 0 chr9 4526989 4527087 -113335540 - AluSx SINE Alu -6 306 209 1675 98 0 0 chr9 4527126 4527331 -113335296 - AluSx SINE Alu -103 209 5 622 344 6 34 chr9 4527356 4527682 -113334945 + L2 LINE L2 2376 2692 -622 491 221 30 70 chr9 4527727 4527926 -113334701 + L2 LINE L2 3120 3310 -3 2224 75 0 52 chr9 4528185 4528491 -113334136 + AluY SINE Alu 1 290 -21 959 146 0 38 chr9 4528494 4528652 -113333975 + AluSg/x SINE Alu 139 290 -20 1782 172 10 10 chr9 4528677 4528979 -113333648 - AluJo SINE Alu -10 302 1 208 200 67 53 chr9 4529079 4529154 -113333473 - L2 LINE L2 -923 2391 2316 909 225 0 0 chr9 4529387 4529556 -113333071 - FAM SINE Alu -6 169 1 239 173 49 25 chr9 4529657 4529738 -113332889 + L1ME4a LINE L1 6038 6120 -1 2338 80 3 7 chr9 4530258 4530557 -113332070 - AluY SINE Alu -13 298 1 349 351 35 18 chr9 4530767 4530995 -113331632 + L3 LINE CR1 1345 1576 -1 1255 208 112 16 chr9 4531185 4531485 -113331142 - MLT1I LTR MaLR -2 407 92 41 36 0 0 chr9 4531509 4531564 -113331063 + AT_rich Low_complexity Low_complexity 1 55 0 2260 105 6 6 chr9 4531570 4531883 -113330744 + AluSq SINE Alu 1 313 0 1263 28 0 0 chr9 4531930 4532075 -113330552 - L1PA4 LINE L1 -8 6147 6003 1951 23 0 0 chr9 4532075 4532294 -113330333 + L1PA4 LINE L1 5777 5995 -160 519 296 0 0 chr9 4532870 4533005 -113329622 + L1MC/D LINE L1 5421 5555 -2253 1756 201 9 25 chr9 4533016 4533077 -113329550 + MLT2B1 LTR ERVL 1 61 -459 1804 158 0 27 chr9 4533077 4533369 -113329258 + AluJb SINE Alu 1 284 -28 1756 201 9 25 chr9 4533369 4533671 -113328956 + MLT2B1 LTR ERVL 61 409 -111 1468 169 72 14 chr9 4533847 4534125 -113328502 + AluJo SINE Alu 5 298 -4 262 185 0 37 chr9 4534353 4534461 -113328166 + CT-rich Low_complexity Low_complexity 2 105 0 1256 124 27 5 chr9 4534464 4534649 -113327978 - AluSq SINE Alu -124 189 1 2129 131 0 13 chr9 4534744 4535057 -113327570 + AluSx SINE Alu 1 309 -3 318 347 0 0 chr9 4535163 4535261 -113327366 + L1MC/D LINE L1 5465 5562 -2246 321 146 0 0 chr9 4535265 4535320 -113327307 + MLT2B2 LTR ERVL 1 55 -460 1363 138 0 46 chr9 4535326 4535543 -113327084 + AluJb SINE Alu 1 207 -105 1913 162 0 20 chr9 4535897 4536200 -113326427 + AluSq SINE Alu 1 297 -16 2520 184 89 7 chr9 4536312 4536887 -113325740 - L1MB7 LINE L1 -76 6108 5487 1838 131 3 91 chr9 4536887 4537216 -113325411 - AluSx SINE Alu -12 300 1 5732 178 47 6 chr9 4537233 4538263 -113324364 + L1MA2 LINE L1 5 1076 -6489 282 179 0 0 chr9 4538279 4538335 -113324292 + CT-rich Low_complexity Low_complexity 2 57 0 5937 131 29 84 chr9 4539102 4539954 -113322673 + L1MA2 LINE L1 1081 1979 -5744 2305 105 14 0 chr9 4539954 4540249 -113322378 - AluSx SINE Alu -13 299 1 5937 131 29 84 chr9 4540249 4540627 -113322000 + L1MA2 LINE L1 1979 2376 -5347 2282 114 0 3 chr9 4540627 4540934 -113321693 - AluSx SINE Alu -6 306 1 5937 131 29 84 chr9 4540934 4542230 -113320397 + L1MA2 LINE L1 2376 3742 -3981 2811 73 0 5 chr9 4542230 4542598 -113320029 + L1PA8 LINE L1 5807 6172 0 5937 131 29 84 chr9 4542598 4542980 -113319647 + L1MA2 LINE L1 3742 4144 -3579 2627 90 0 37 chr9 4542980 4543285 -113319342 + THE1B LTR MaLR 1 291 -73 2235 119 0 0 chr9 4543285 4543588 -113319039 - AluSg SINE Alu -7 303 1 2627 90 0 37 chr9 4543588 4543660 -113318967 + THE1B LTR MaLR 291 364 0 5937 131 29 84 chr9 4543660 4545262 -113317365 + L1MA2 LINE L1 4144 5833 -1890 1712 158 92 0 chr9 4545262 4545534 -113317093 - AluSx SINE Alu -15 297 1 5937 131 29 84 chr9 4545534 4545690 -113316937 + L1MA2 LINE L1 5833 5996 -1727 1614 144 48 41 chr9 4545690 4545981 -113316646 + AluJb SINE Alu 11 303 -9 5937 131 29 84 chr9 4545981 4546589 -113316038 + L1MA2 LINE L1 5996 6636 -1087 1304 141 0 0 chr9 4546589 4546774 -113315853 + AluSg/x SINE Alu 125 309 -3 5937 131 29 84 chr9 4546774 4548137 -113314490 + L1MA2 LINE L1 6636 7723 0 2209 150 0 0 chr9 4548142 4548503 -113314124 + L1 LINE L1 4644 5004 -1142 1271 203 68 0 chr9 4548503 4548740 -113313887 + AluJb SINE Alu 1 253 -59 21 36 0 0 chr9 4550161 4550189 -113312438 + GC_rich Low_complexity Low_complexity 1 28 0 2136 102 3 20 chr9 4552000 4552304 -113310323 - AluSx SINE Alu -13 299 1 234 195 37 98 chr9 4552320 4552402 -113310225 + L1MC4 LINE L1 6627 6703 -1339 217 274 14 14 chr9 4552547 4552620 -113310007 - L3 LINE CR1 -10 1567 1495 180 305 67 9 chr9 4552703 4552808 -113309819 - L2 LINE L2 -3 3310 3200 3363 136 28 16 chr9 4553017 4553332 -113309295 - L1PB4 LINE L1 -3 6153 5826 1588 197 28 14 chr9 4553332 4553621 -113309006 - AluJo SINE Alu -19 293 1 3363 136 28 16 chr9 4553621 4553873 -113308754 - L1PB4 LINE L1 -330 5826 5579 745 206 63 71 chr9 4553960 4554213 -113308414 + MIR SINE MIR 12 262 0 309 283 83 17 chr9 4554214 4554334 -113308293 - L3 LINE CR1 -232 1345 1218 1209 174 38 5 chr9 4554375 4554587 -113308040 + MER20 DNA MER1_type 1 219 0 196 250 269 19 chr9 4555273 4555381 -113307246 + MIR3 SINE MIR 14 148 -60 183 80 0 0 chr9 4555794 4555819 -113306808 + (T)n Simple_repeat Simple_repeat 1 25 0 189 0 0 0 chr9 4555896 4555917 -113306710 + (TTTTC)n Simple_repeat Simple_repeat 1 21 0 484 179 14 28 chr9 4555917 4556062 -113306565 + CT-rich Low_complexity Low_complexity 3 145 0 665 233 0 0 chr9 4556062 4556195 -113306432 - FLAM_C SINE Alu 0 133 1 2116 141 11 22 chr9 4556230 4556599 -113306028 - L1MD1 LINE L1 0 6242 5878 38 0 0 0 chr9 4556606 4556644 -113305983 + AT_rich Low_complexity Low_complexity 1 38 0 2626 187 129 44 chr9 4556925 4557127 -113305500 - L1MD1 LINE L1 -350 5892 5709 2219 117 10 0 chr9 4557127 4557436 -113305191 - AluSx SINE Alu 0 312 1 2626 187 129 44 chr9 4557436 4557574 -113305053 - L1MD1 LINE L1 -533 5709 5584 2233 110 3 3 chr9 4557574 4557874 -113304753 - AluSx SINE Alu -12 300 1 2626 187 129 44 chr9 4557874 4558094 -113304533 - L1MD1 LINE L1 -658 5584 5384 1578 202 0 26 chr9 4558094 4558401 -113304226 - AluJo SINE Alu -13 299 1 2626 187 129 44 chr9 4558401 4558835 -113303792 - L1MD1 LINE L1 -858 5384 4988 1934 116 13 51 chr9 4558835 4559146 -113303481 - AluSx SINE Alu -13 299 1 2626 187 129 44 chr9 4559146 4559439 -113303188 - L1MD1 LINE L1 -1254 4988 4477 1466 173 3 90 chr9 4559737 4560069 -113302558 - AluJo SINE Alu 0 305 1 298 120 0 40 chr9 4562076 4562126 -113300501 + AluJb SINE Alu 85 132 -170 728 181 52 26 chr9 4562170 4562325 -113300302 + FRAM SINE Alu 9 167 -9 5640 231 72 36 chr9 4562776 4562945 -113299682 - L1MD1 LINE L1 -1656 4490 4329 471 48 0 0 chr9 4562945 4563007 -113299620 + (TG)n Simple_repeat Simple_repeat 2 63 0 5640 231 72 36 chr9 4563007 4563517 -113299110 - L1MD1 LINE L1 -1817 4329 3839 426 39 0 0 chr9 4563517 4563569 -113299058 + (CA)n Simple_repeat Simple_repeat 2 53 0 5640 231 72 36 chr9 4563569 4564447 -113298180 - L1MD1 LINE L1 -2307 3839 2839 2320 103 3 0 chr9 4564447 4564747 -113297880 - AluSp SINE Alu -11 302 2 5640 231 72 36 chr9 4564747 4565229 -113297398 - L1MD1 LINE L1 -3307 2839 2376 1978 140 0 10 chr9 4565229 4565529 -113297098 - AluJb SINE Alu -6 306 10 439 260 95 22 chr9 4565969 4566230 -113296397 - L1MC4a LINE L1 -302 5819 5613 2267 99 3 3 chr9 4566235 4566537 -113296090 - AluSc SINE Alu -7 302 1 2192 122 0 34 chr9 4566737 4567057 -113295570 - AluSx SINE Alu -3 309 1 1929 245 129 21 chr9 4567114 4567827 -113294800 - L1ME3A LINE L1 -4 6166 5377 994 94 61 39 chr9 4567830 4568010 -113294617 - L1MA5 LINE L1 -2 6298 6115 1318 119 40 44 chr9 4568010 4568236 -113294391 + AluJo SINE Alu 85 309 -3 1890 146 46 15 chr9 4568236 4569350 -113293277 - L1MA5 LINE L1 -180 6120 4910 618 195 0 18 chr9 4569356 4569469 -113293158 - AluJo SINE Alu -178 134 24 2717 161 49 60 chr9 4569472 4570116 -113292511 - L1ME3A LINE L1 -1397 4749 4059 6829 46 49 3 chr9 4570116 4571083 -113291544 + L1PA6 LINE L1 5143 6148 -6 2717 161 49 60 chr9 4571083 4571214 -113291413 - L1ME3A LINE L1 -2087 4059 3928 1382 197 66 4 chr9 4571221 4571495 -113291132 - AluJo SINE Alu -21 291 1 3717 202 39 6 chr9 4571495 4572394 -113290233 - L1M2 LINE L1 -4029 3139 2211 2859 200 136 10 chr9 4572424 4573044 -113289583 - L1M2 LINE L1 -6460 708 11 478 240 145 12 chr9 4573041 4573283 -113289344 - L1M4 LINE L1 -749 5397 5124 * 25 0 0 0 chr9 4573476 4573501 -113289126 + AT_rich Low_complexity Low_complexity 1 25 0 2429 66 0 3 chr9 4573755 4574044 -113288583 - AluY SINE Alu -23 288 1 236 29 0 29 chr9 4574066 4574100 -113288527 + (TTTTC)n Simple_repeat Simple_repeat 4 36 0 1118 239 79 31 chr9 4574137 4574555 -113288072 - LTR56 LTR ERV1 0 445 8 1323 189 58 0 chr9 4574556 4574842 -113287785 + AluJo SINE Alu 10 310 0 228 333 68 8 chr9 4575353 4575470 -113287157 - MIR SINE MIR -62 146 48 1915 183 86 49 chr9 4575741 4576227 -113286400 + LTR54 LTR ERV1 7 510 0 397 324 7 7 chr9 4576227 4576369 -113286258 - MIR SINE MIR -60 202 61 1781 147 35 7 chr9 4576455 4576741 -113285886 + MER49 LTR ERV1 1 294 -629 1648 179 16 52 chr9 4576761 4576834 -113285793 + MER4D LTR ERV1 554 628 -275 1898 174 26 0 chr9 4576834 4577138 -113285489 - AluJo SINE Alu 0 312 1 1648 179 16 52 chr9 4577138 4577427 -113285200 + MER4D LTR ERV1 628 903 0 2116 145 0 3 chr9 4577878 4578189 -113284438 + AluJo SINE Alu 1 310 -2 410 206 20 0 chr9 4578211 4578313 -113284314 + GA-rich Low_complexity Low_complexity 1 104 0 2193 104 23 7 chr9 4578414 4578721 -113283906 - AluSp SINE Alu -1 312 1 1415 161 0 0 chr9 4578769 4578987 -113283640 - AluJb SINE Alu -94 218 1 510 302 113 8 chr9 4579026 4579274 -113283353 - L1MC4a LINE L1 -1865 5943 5670 256 250 0 16 chr9 4579278 4579342 -113283285 - L1MC4a LINE L1 -2177 5631 5569 485 148 23 0 chr9 4579342 4579430 -113283197 + LTR23 LTR ERV1 1 90 -347 2270 117 0 0 chr9 4579430 4579739 -113282888 + AluSx SINE Alu 1 309 -3 1900 159 0 7 chr9 4579814 4580192 -113282435 - AluSx SINE Alu 0 376 1 1139 183 116 12 chr9 4580287 4580538 -113282089 + LTR23 LTR ERV1 161 437 0 995 229 25 55 chr9 4580538 4580865 -113281762 - L1MC4a LINE L1 -2236 5572 5256 394 221 0 0 chr9 4580867 4580935 -113281692 - MER63 DNA MER1_type 0 1062 995 341 241 13 13 chr9 4580956 4581035 -113281592 - MER63 DNA MER1_type -70 766 688 322 341 40 44 chr9 4581073 4581325 -113281302 - L1MC4a LINE L1 -883 5263 5013 1125 195 65 89 chr9 4581389 4581758 -113280869 + MLT1A2 LTR MaLR 15 374 0 711 251 182 19 chr9 4581945 4582252 -113280375 + MLT1A1 LTR MaLR 1 357 -8 210 204 0 0 chr9 4582252 4582296 -113280331 + L2 LINE L2 2498 2541 -773 2273 119 0 3 chr9 4583092 4583403 -113279224 - AluSg SINE Alu 0 310 1 1812 252 105 16 chr9 4583419 4583983 -113278644 + L2 LINE L2 1928 2541 -773 1591 152 3 69 chr9 4584476 4584766 -113277861 + AluJo SINE Alu 12 282 -30 216 0 0 0 chr9 4584769 4584793 -113277834 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 437 226 110 108 chr9 4584845 4585454 -113277173 + L1MD3 LINE L1 6535 7141 -854 1486 128 83 55 chr9 4585454 4585743 -113276884 - AluJo SINE Alu -15 297 1 437 226 110 108 chr9 4585743 4586483 -113276144 + L1MD3 LINE L1 7141 7994 -1 183 318 91 0 chr9 4586483 4586549 -113276078 + L2 LINE L2 2545 2616 -698 1285 246 58 31 chr9 4586550 4587056 -113275571 - MLT1G LTR MaLR -49 518 1 520 274 73 22 chr9 4587056 4587235 -113275392 + L2 LINE L2 2790 2977 -337 1137 168 0 0 chr9 4587240 4587413 -113275214 - AluSg/x SINE Alu -8 304 132 249 33 0 0 chr9 4587413 4587443 -113275184 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 2004 124 0 31 chr9 4587443 4587734 -113274893 - AluSx SINE Alu -30 282 1 1884 135 3 64 chr9 4587744 4588055 -113274572 - AluJb SINE Alu -20 292 1 2051 209 88 2 chr9 4588237 4588667 -113273960 - MLT1C LTR MaLR 0 467 1 1895 134 31 0 chr9 4588750 4589041 -113273586 + AluSx SINE Alu 1 300 -12 265 232 0 0 chr9 4589064 4589120 -113273507 - L2 LINE L2 -4 3309 3254 2024 134 3 17 chr9 4589782 4590080 -113272547 + AluSq SINE Alu 2 295 -18 2186 91 39 0 chr9 4590083 4590368 -113272259 + AluSp SINE Alu 1 296 -17 372 274 99 125 chr9 4591222 4592300 -113270327 - L1M2 LINE L1 -5599 1250 489 215 61 30 0 chr9 4592449 4592482 -113270145 + (TTTC)n Simple_repeat Simple_repeat 3 36 0 230 188 47 16 chr9 4592701 4592765 -113269862 + L1MB7 LINE L1 6119 6184 0 264 100 0 0 chr9 4592879 4592919 -113269708 + (T)n Simple_repeat Simple_repeat 1 40 0 1634 88 0 0 chr9 4593112 4593328 -113269299 - AluY SINE Alu -95 216 1 1657 159 32 11 chr9 4593498 4593781 -113268846 + AluSq SINE Alu 15 303 -10 1914 148 3 19 chr9 4593905 4594216 -113268411 + AluSx SINE Alu 1 306 -6 526 269 91 62 chr9 4594216 4594512 -113268115 - L1ME4a LINE L1 -20 6101 5786 2248 106 0 0 chr9 4594512 4594804 -113267823 + AluSq SINE Alu 1 292 -21 526 269 91 62 chr9 4594804 4594971 -113267656 - L1ME4a LINE L1 -335 5786 5625 244 261 93 81 chr9 4595173 4595236 -113267391 - MIR3 SINE MIR -2 206 145 1605 131 26 22 chr9 4595236 4595504 -113267123 - AluSx SINE Alu -8 304 36 244 261 93 81 chr9 4595504 4595601 -113267026 - MIR3 SINE MIR -63 145 44 1799 149 24 7 chr9 4596000 4596288 -113266339 + AluJo SINE Alu 1 293 -19 276 333 8 50 chr9 4596295 4596415 -113266212 + MIR3 SINE MIR 87 201 -7 739 138 0 0 chr9 4596724 4596840 -113265787 - L1MB8 LINE L1 0 6178 6063 2322 106 0 0 chr9 4596842 4597144 -113265483 - AluSx SINE Alu -10 302 1 45 34 0 0 chr9 4597150 4597209 -113265418 + AT_rich Low_complexity Low_complexity 1 59 0 1866 136 45 14 chr9 4597209 4597495 -113265132 + AluSx SINE Alu 1 295 -17 315 275 11 0 chr9 4597496 4597587 -113265040 + L1MC4 LINE L1 6614 6705 -1337 * 336 238 71 0 chr9 4597529 4597613 -113265014 - L1MC4 LINE L1 -1339 6703 6614 495 123 0 0 chr9 4597616 4597775 -113264852 + (TA)n Simple_repeat Simple_repeat 1 159 0 678 170 0 18 chr9 4597775 4597887 -113264740 - AluJb SINE Alu -201 111 2 22 0 0 0 chr9 4597888 4597910 -113264717 + AT_rich Low_complexity Low_complexity 1 22 0 1790 163 11 30 chr9 4597915 4598276 -113264351 - L1MB8 LINE L1 -109 6069 5716 198 208 0 0 chr9 4598457 4598505 -113264122 + (TCCA)n Simple_repeat Simple_repeat 1 48 0 1736 199 47 24 chr9 4598628 4599009 -113263618 - MLT1B LTR MaLR 0 390 1 204 314 97 8 chr9 4599340 4599464 -113263163 - L2 LINE L2 -1481 1833 1699 1573 146 8 16 chr9 4599872 4600119 -113262508 + AluJo SINE Alu 6 250 -62 2240 174 98 5 chr9 4600538 4600765 -113261862 - Tigger2a DNA MER2_type -2274 434 230 1782 174 10 10 chr9 4600765 4601075 -113261552 + AluJo SINE Alu 1 310 -2 2240 174 98 5 chr9 4601075 4601243 -113261384 - Tigger2a DNA MER2_type -2478 230 2 2806 102 10 5 chr9 4601506 4601900 -113260727 + L1PA13 LINE L1 5766 6161 -2 1001 158 0 0 chr9 4602387 4602539 -113260088 - AluJb SINE Alu -5 307 156 21 36 0 0 chr9 4602547 4602575 -113260052 + AT_rich Low_complexity Low_complexity 1 28 0 3401 149 16 17 chr9 4602647 4603161 -113259466 - L1MB7 LINE L1 0 6184 5670 1525 183 27 23 chr9 4603161 4603462 -113259165 - AluJo SINE Alu -10 302 1 3401 149 16 17 chr9 4603462 4603524 -113259103 - L1MB7 LINE L1 -514 5670 5609 836 178 34 0 chr9 4603544 4603690 -113258937 - FRAM SINE Alu -31 145 1 2164 119 3 0 chr9 4603705 4603999 -113258628 + AluSq SINE Alu 1 295 -18 405 177 0 0 chr9 4603999 4604078 -113258549 + (TA)n Simple_repeat Simple_repeat 1 79 0 339 300 0 0 chr9 4604080 4604170 -113258457 + L1MC4 LINE L1 6614 6703 -1339 771 171 0 0 chr9 4604183 4604300 -113258327 - FLAM_C SINE Alu -15 118 2 677 192 16 0 chr9 4604301 4604423 -113258204 - L1MB8 LINE L1 -558 5616 5490 2122 122 3 3 chr9 4604423 4604726 -113257901 - AluSx SINE Alu -9 303 1 677 192 16 0 chr9 4604726 4604740 -113257887 - L1MB8 LINE L1 -684 5490 5478 16175 112 23 6 chr9 4604751 4607103 -113255524 + Tigger1 DNA MER2_type 26 2418 0 1088 159 78 31 chr9 4607107 4607396 -113255231 - L1MB8 LINE L1 -694 5484 5188 975 65 16 8 chr9 4607405 4607529 -113255098 - AluSq/x SINE Alu -187 125 1 1474 229 23 30 chr9 4607529 4607699 -113254928 - L1MB8 LINE L1 -949 5197 5027 2260 92 17 7 chr9 4607699 4607994 -113254633 + AluSg SINE Alu 1 298 -12 1474 229 23 30 chr9 4607994 4608216 -113254411 - L1MB8 LINE L1 -1119 5027 4808 1547 156 0 0 chr9 4608218 4608443 -113254184 - AluJb SINE Alu -11 301 77 460 241 86 0 chr9 4608453 4608569 -113254058 - L1MB8 LINE L1 -1941 4205 4080 247 276 35 35 chr9 4609040 4609156 -113253471 + L1ME LINE L1 5549 5664 -457 400 229 42 35 chr9 4609752 4609896 -113252731 - L1ME4a LINE L1 -56 6065 5921 1992 117 3 47 chr9 4609924 4610241 -113252386 - AluSx SINE Alu -9 303 1 219 294 71 24 chr9 4610636 4610721 -113251906 + MIR3 SINE MIR 90 178 -30 255 231 87 29 chr9 4611143 4611247 -113251380 - L2 LINE L2 -91 3222 3113 2257 108 3 0 chr9 4611257 4611553 -113251074 + AluSx SINE Alu 1 297 -15 2019 143 0 7 chr9 4611594 4611894 -113250733 - AluSx SINE Alu -13 299 2 1929 137 3 20 chr9 4612314 4612614 -113250013 - AluJo SINE Alu -17 295 1 1978 115 20 7 chr9 4612937 4613232 -113249395 - AluSx SINE Alu -13 299 1 773 238 40 62 chr9 4613271 4613544 -113249083 - MLT2B1 LTR ERVL -253 267 1 201 179 26 0 chr9 4613663 4613702 -113248925 + CT-rich Low_complexity Low_complexity 2 41 0 230 229 43 29 chr9 4614077 4614147 -113248480 - L2 LINE L2 -2 3270 3200 340 248 19 38 chr9 4614683 4614788 -113247839 - MLT1K LTR MaLR -27 561 459 1856 173 127 0 chr9 4615132 4615455 -113247172 - MER47A DNA MER2_type 0 366 3 593 233 219 5 chr9 4615791 4616006 -113246621 + MIR SINE MIR 2 262 0 1598 177 23 23 chr9 4616068 4616367 -113246260 - AluJo SINE Alu -13 299 1 492 296 46 15 chr9 4616468 4616664 -113245963 + MIR SINE MIR 61 262 0 182 231 96 0 chr9 4616676 4616728 -113245899 - L2 LINE L2 -45 3227 3171 839 232 170 26 chr9 4616818 4617220 -113245407 - MLT1K LTR MaLR -37 551 20 1733 174 7 20 chr9 4617319 4617624 -113245003 + AluJb SINE Alu 1 301 -11 2242 111 7 0 chr9 4617772 4618079 -113244548 - AluSx SINE Alu -3 309 1 441 296 0 0 chr9 4618820 4619127 -113243500 + (TG)n Simple_repeat Simple_repeat 1 307 0 260 314 0 0 chr9 4619606 4619676 -113242951 + MIR SINE MIR 180 249 -13 1627 178 39 0 chr9 4622089 4622375 -113240252 - AluJo SINE Alu -11 301 5 2520 26 0 40 chr9 4622497 4622800 -113239827 + AluY SINE Alu 1 291 -20 243 0 0 0 chr9 4623177 4623204 -113239423 + (TAAAAA)n Simple_repeat Simple_repeat 2 28 0 2072 80 0 4 chr9 4624107 4624370 -113238257 - AluSc SINE Alu -47 262 1 28 29 0 0 chr9 4624620 4624655 -113237972 + AT_rich Low_complexity Low_complexity 1 35 0 198 200 67 50 chr9 4627110 4627170 -113235457 + MIR SINE MIR 2 62 -200 23 0 0 0 chr9 4627815 4627838 -113234789 + AT_rich Low_complexity Low_complexity 1 23 0 359 269 107 13 chr9 4628711 4628860 -113233767 + MIR SINE MIR 56 218 -44 2497 48 0 25 chr9 4630102 4630416 -113232211 - AluY SINE Alu -5 306 1 636 244 73 6 chr9 4632186 4632350 -113230277 + MIR SINE MIR 85 259 -3 1916 159 28 0 chr9 4632568 4632857 -113229770 + AluJo SINE Alu 1 297 -15 33 25 0 0 chr9 4633006 4633046 -113229581 + AT_rich Low_complexity Low_complexity 1 40 0 274 257 0 0 chr9 4633069 4633143 -113229484 - L1ME4a LINE L1 -70 6051 5978 1035 154 135 5 chr9 4633585 4633793 -113228834 - MER46A DNA MER2_type 0 236 2 1208 141 71 24 chr9 4633899 4634196 -113228431 - Charlie1 DNA MER1_type -31 2730 2420 625 210 29 0 chr9 4634194 4634332 -113228295 - Charlie1 DNA MER1_type -2615 146 5 * 450 261 85 13 chr9 4634335 4634488 -113228139 - L1ME4a LINE L1 -505 5657 5494 300 228 97 28 chr9 4634595 4634740 -113227887 - L1ME4a LINE L1 -254 5867 5713 351 293 75 45 chr9 4634741 4634874 -113227753 + L2 LINE L2 3136 3272 0 22 0 0 0 chr9 4635288 4635310 -113227317 + AT_rich Low_complexity Low_complexity 1 22 0 710 179 0 30 chr9 4636519 4636653 -113225974 - FLAM_C SINE Alu -2 131 2 2096 99 18 7 chr9 4636930 4637212 -113225415 + AluSx SINE Alu 1 285 -27 1481 194 3 26 chr9 4637219 4637523 -113225104 + AluJo SINE Alu 1 297 -15 748 189 69 19 chr9 4637662 4637821 -113224806 + AluJo SINE Alu 122 288 -24 2249 117 3 0 chr9 4638127 4638425 -113224202 - AluSg SINE Alu -11 299 1 1617 209 3 0 chr9 4638640 4638927 -113223700 + AluJo SINE Alu 5 292 -20 875 236 100 9 chr9 4639026 4639255 -113223372 + MIR SINE MIR 1 250 -12 22 0 0 0 chr9 4639533 4639555 -113223072 + AT_rich Low_complexity Low_complexity 1 22 0 1693 197 3 3 chr9 4639555 4639855 -113222772 - AluJb SINE Alu -12 300 1 377 208 176 0 chr9 4640283 4640408 -113222219 - L1ME4a LINE L1 -1 6120 5974 2370 76 0 0 chr9 4640454 4640743 -113221884 + AluSq SINE Alu 9 297 -16 30 0 0 0 chr9 4641139 4641169 -113221458 + AT_rich Low_complexity Low_complexity 1 30 0 2166 78 30 0 chr9 4641546 4641842 -113220785 + L1PA12 LINE L1 5860 6164 -4 365 316 23 11 chr9 4642067 4642244 -113220383 + ERVL LTR ERVL 2781 2959 -2805 1011 303 63 30 chr9 4642397 4642922 -113219705 + ERVL LTR ERVL 4097 4638 -1126 605 269 48 32 chr9 4643078 4643327 -113219300 + ERVL LTR ERVL 4663 4915 -849 22 35 0 0 chr9 4643504 4643533 -113219094 + AT_rich Low_complexity Low_complexity 1 29 0 295 332 101 10 chr9 4643699 4643898 -113218729 + L2 LINE L2 2835 3051 -221 22 56 0 0 chr9 4644224 4644260 -113218367 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr9 4644653 4644675 -113217952 + AT_rich Low_complexity Low_complexity 1 22 0 2256 89 0 7 chr9 4644718 4645009 -113217618 + AluSg SINE Alu 1 289 -21 2197 138 0 0 chr9 4645314 4645619 -113217008 - AluJo SINE Alu -7 305 1 1638 127 58 7 chr9 4645939 4646247 -113216380 - MER33 DNA MER1_type 0 324 1 1663 183 10 28 chr9 4646845 4647135 -113215492 - AluJb SINE Alu -27 285 1 279 269 0 26 chr9 4647417 4647495 -113215132 + MIR3 SINE MIR 97 172 -36 217 328 0 0 chr9 4648369 4648427 -113214200 + L2 LINE L2 3207 3264 -8 2135 124 0 0 chr9 4648729 4649012 -113213615 - AluSc SINE Alu -26 283 1 225 361 0 0 chr9 4649409 4649481 -113213146 + L2 LINE L2 2798 2869 -445 229 139 66 7 chr9 4649865 4650016 -113212611 + (TA)n Simple_repeat Simple_repeat 2 161 0 202 146 62 0 chr9 4650018 4650066 -113212561 + (TATAA)n Simple_repeat Simple_repeat 3 53 0 2104 115 0 50 chr9 4650243 4650391 -113212236 + AluSx SINE Alu 1 126 -186 2287 85 7 3 chr9 4650391 4650686 -113211941 + AluY SINE Alu 1 296 -15 2104 115 0 50 chr9 4650686 4650860 -113211767 + AluSx SINE Alu 126 307 -5 1595 85 42 5 chr9 4651367 4651579 -113211048 - AluSp SINE Alu -19 294 75 326 274 59 39 chr9 4651584 4651686 -113210941 + MIR3 SINE MIR 3 106 -102 323 329 129 7 chr9 4654000 4654140 -113208487 - MIR SINE MIR -89 173 17 286 315 88 35 chr9 4654275 4654615 -113208012 + L1MC4a LINE L1 5538 5895 -1913 342 0 0 0 chr9 4654675 4654713 -113207914 + (TG)n Simple_repeat Simple_repeat 2 39 0 258 231 0 0 chr9 4655052 4655104 -113207523 + MIR SINE MIR 204 255 -7 1212 290 159 15 chr9 4655105 4655716 -113206911 + L2 LINE L2 2036 2734 -580 291 296 133 0 chr9 4655727 4655862 -113206765 - MLT1L LTR MaLR -13 602 450 1566 139 120 8 chr9 4655863 4656129 -113206498 + AluSg1 SINE Alu 1 296 -13 353 147 0 15 chr9 4656129 4656197 -113206430 + (GGGAA)n Simple_repeat Simple_repeat 2 68 0 498 293 26 60 chr9 4656197 4656463 -113206164 - MLT1L LTR MaLR -153 462 206 328 250 11 11 chr9 4656487 4656579 -113206048 - MLT1L LTR MaLR -523 92 1 2270 88 0 29 chr9 4656633 4656940 -113205687 - AluSx SINE Alu -14 298 1 779 319 74 32 chr9 4656946 4657417 -113205210 + L2 LINE L2 2823 3313 0 716 200 8 0 chr9 4657609 4657729 -113204898 - FLAM_A SINE Alu -12 121 1 2419 83 0 0 chr9 4658273 4658575 -113204052 + AluY SINE Alu 1 302 -9 1626 183 14 10 chr9 4658773 4659062 -113203565 - AluJo SINE Alu -22 290 1 251 259 41 104 chr9 4659083 4659390 -113203237 - L1MC5 LINE L1 -27 8015 7685 2239 116 0 3 chr9 4659390 4659693 -113202934 + AluSp SINE Alu 1 302 -11 251 259 41 104 chr9 4659693 4659893 -113202734 - L1MC5 LINE L1 -357 7685 7474 2287 88 0 7 chr9 4659918 4660202 -113202425 - AluSp SINE Alu -31 282 1 276 100 0 0 chr9 4660203 4660243 -113202384 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 786 182 8 0 chr9 4660243 4660375 -113202252 - AluJb SINE Alu -30 282 150 260 211 40 0 chr9 4660406 4660482 -113202145 - L1MC5 LINE L1 -553 7408 7330 629 212 62 36 chr9 4660482 4660626 -113202001 + MER3 DNA MER1_type 1 154 -55 2112 109 0 3 chr9 4660626 4660931 -113201696 + AluSq SINE Alu 1 304 0 629 212 62 36 chr9 4660931 4660978 -113201649 + MER3 DNA MER1_type 154 198 -11 329 274 10 20 chr9 4661167 4661269 -113201358 + L1MCa LINE L1 1968 2068 -4358 2256 111 3 0 chr9 4661286 4661592 -113201035 - AluSx SINE Alu -5 307 1 660 263 158 33 chr9 4662785 4663129 -113199498 - L1MC4a LINE L1 -1869 5939 5537 1645 174 126 51 chr9 4663129 4663338 -113199289 + MLT1D LTR MaLR 1 193 -312 2399 110 0 0 chr9 4663338 4663647 -113198980 + AluSx SINE Alu 1 309 -3 1645 174 126 51 chr9 4663647 4663907 -113198720 + MLT1D LTR MaLR 193 505 0 660 263 158 33 chr9 4663907 4663961 -113198666 - L1MC4a LINE L1 -2271 5537 5491 26 82 0 0 chr9 4664000 4664061 -113198566 + AT_rich Low_complexity Low_complexity 1 61 0 287 299 226 0 chr9 4664859 4665076 -113197551 - L2 LINE L2 -1046 2268 2003 479 296 145 0 chr9 4665183 4665369 -113197258 + MIR SINE MIR 47 259 -3 300 298 132 85 chr9 4670059 4670543 -113192084 - L1M2 LINE L1 -5926 923 417 514 186 0 35 chr9 4671863 4671976 -113190651 - L1PA10 LINE L1 -1 6167 6059 8227 47 1 2 chr9 4671976 4673691 -113188936 - L1PA6 LINE L1 -154 6000 4289 1496 128 163 8 chr9 4674047 4674305 -113188322 - AluSg1 SINE Alu -11 298 1 907 233 124 8 chr9 4674799 4675048 -113187579 - MLT1C LTR MaLR 0 467 190 584 220 61 0 chr9 4675066 4675198 -113187429 + MER93b LTR ERV1 18 157 -216 624 227 59 74 chr9 4675198 4675454 -113187173 + MER93b LTR ERV1 117 368 -5 921 162 30 35 chr9 4675484 4675682 -113186945 - MLT1C LTR MaLR -270 197 1 185 357 0 0 chr9 4676174 4676230 -113186397 - L2 LINE L2 -3 3269 3214 615 27 0 0 chr9 4676505 4676578 -113186049 + (TTCC)n Simple_repeat Simple_repeat 3 75 0 1733 173 0 0 chr9 4676580 4676858 -113185769 - AluJb SINE Alu -33 279 2 2360 108 0 6 chr9 4677165 4677479 -113185148 + AluSx SINE Alu 1 312 0 2298 167 28 7 chr9 4677562 4677998 -113184629 - L1MB7 LINE L1 -124 6060 5616 3791 117 130 7 chr9 4678041 4678740 -113183887 + LTR1 LTR ERV1 1 785 0 7236 181 67 34 chr9 4678740 4679053 -113183574 - L1MB7 LINE L1 -565 5619 5318 1810 168 3 25 chr9 4679053 4679368 -113183259 - AluJo SINE Alu -4 308 1 7236 181 67 34 chr9 4679368 4680145 -113182482 - L1MB7 LINE L1 -866 5318 4568 2181 116 30 0 chr9 4680145 4680448 -113182179 - AluSp SINE Alu -1 312 1 7236 181 67 34 chr9 4680448 4680608 -113182019 - L1MB7 LINE L1 -1616 4568 4415 226 146 0 0 chr9 4680608 4680656 -113181971 - AluSp SINE Alu 0 303 256 1631 99 0 5 chr9 4680656 4680877 -113181750 - AluSp SINE Alu -93 220 1 7236 181 67 34 chr9 4680877 4681798 -113180829 - L1MB7 LINE L1 -1768 4416 3341 988 207 0 16 chr9 4681817 4682005 -113180622 + AluJb SINE Alu 108 292 -20 1970 143 27 0 chr9 4682015 4682140 -113180487 + AluSx SINE Alu 2 122 -190 459 0 0 0 chr9 4682140 4682191 -113180436 + (CA)n Simple_repeat Simple_repeat 2 52 0 1970 143 27 0 chr9 4682191 4682358 -113180269 + AluSx SINE Alu 122 302 -10 943 210 8 8 chr9 4682360 4682627 -113180000 - L1MB7 LINE L1 -2817 3329 3063 580 286 10 41 chr9 4683382 4683578 -113179049 + MIR SINE MIR 2 191 -71 4521 93 10 42 chr9 4683597 4683920 -113178707 + L1PB1 LINE L1 5465 5797 -354 297 0 0 0 chr9 4683920 4683953 -113178674 + (TG)n Simple_repeat Simple_repeat 2 34 0 4521 93 10 42 chr9 4683953 4684282 -113178345 + L1PB1 LINE L1 5797 6096 -55 2349 42 0 3 chr9 4684282 4684598 -113178029 - AluY SINE Alu 0 315 1 4521 93 10 42 chr9 4684598 4684653 -113177974 + L1PB1 LINE L1 6096 6151 0 2091 147 0 0 chr9 4684881 4685180 -113177447 + AluSx SINE Alu 1 299 -13 2215 121 3 0 chr9 4685401 4685706 -113176921 - AluSx SINE Alu -6 306 1 1965 115 82 6 chr9 4685937 4686267 -113176360 - L1PA13 LINE L1 -1 6162 5808 198 71 0 0 chr9 4686369 4686397 -113176230 + (TTA)n Simple_repeat Simple_repeat 1 28 0 25 51 0 0 chr9 4686774 4686813 -113175814 + AT_rich Low_complexity Low_complexity 1 39 0 198 0 0 0 chr9 4686870 4686892 -113175735 + (TG)n Simple_repeat Simple_repeat 2 23 0 386 259 12 0 chr9 4686930 4687015 -113175612 + MER58B DNA MER1_type 4 89 -252 1814 182 43 0 chr9 4687015 4687383 -113175244 - L1MB7 LINE L1 -16 6168 5785 1966 111 40 12 chr9 4687383 4687708 -113174919 + MSTC LTR MaLR 95 428 0 604 162 115 0 chr9 4687708 4687856 -113174771 - L1MB7 LINE L1 -448 5736 5572 1000 170 71 20 chr9 4687856 4688109 -113174518 + MER58B DNA MER1_type 76 341 0 351 0 0 0 chr9 4688291 4688330 -113174297 + (TG)n Simple_repeat Simple_repeat 1 39 0 252 0 0 0 chr9 4688329 4688357 -113174270 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 1298 166 89 76 chr9 4688649 4688951 -113173676 - AluJb SINE Alu -6 306 1 1994 136 0 19 chr9 4688985 4689293 -113173334 - AluSx SINE Alu -10 302 1 2040 135 0 0 chr9 4689722 4690010 -113172617 + AluSg SINE Alu 13 300 -10 1701 170 18 0 chr9 4690948 4691250 -113171377 + AluJb SINE Alu 1 307 0 1309 168 31 8 chr9 4691343 4691599 -113171028 - MER2 DNA MER2_type -1 344 83 538 194 0 20 chr9 4691656 4691754 -113170873 - MER2 DNA MER2_type -248 97 2 391 272 34 60 chr9 4693025 4693199 -113169428 + MIR SINE MIR 28 197 -11 531 340 15 15 chr9 4693870 4694067 -113168560 - MIR SINE MIR -34 228 32 1265 102 0 0 chr9 4694077 4694243 -113168384 + AluSg/x SINE Alu 145 310 0 2079 115 0 3 chr9 4694503 4694812 -113167815 + AluSq SINE Alu 1 308 0 420 250 24 40 chr9 4694928 4695052 -113167575 + L2 LINE L2 3151 3272 0 304 291 13 0 chr9 4695082 4695161 -113167466 - MIR3 SINE MIR -20 188 109 237 343 14 0 chr9 4695231 4695304 -113167323 - L2 LINE L2 -1 3312 3239 851 302 74 30 chr9 4695451 4696122 -113166505 - L2 LINE L2 -18 3295 2590 614 244 67 0 chr9 4696550 4696759 -113165868 - MER20B DNA MER1_type 0 783 561 929 216 140 84 chr9 4696778 4697171 -113165456 - MER20B DNA MER1_type -366 417 3 221 336 136 18 chr9 4697225 4697335 -113165292 + L2 LINE L2 3145 3267 -5 21 0 0 0 chr9 4699106 4699127 -113163500 + AT_rich Low_complexity Low_complexity 1 21 0 2380 87 0 0 chr9 4700404 4700702 -113161925 - AluSx SINE Alu -14 298 1 1304 125 100 0 chr9 4700781 4700981 -113161646 + AluSg/x SINE Alu 86 305 -7 602 332 16 24 chr9 4700982 4701235 -113161392 - MIR SINE MIR -5 257 7 23 0 0 0 chr9 4701696 4701719 -113160908 + AT_rich Low_complexity Low_complexity 1 23 0 832 231 95 18 chr9 4702032 4702253 -113160374 + MIR SINE MIR 9 246 -16 1585 240 41 7 chr9 4702720 4703133 -113159494 - L1ME1 LINE L1 -25 6141 5715 278 148 0 82 chr9 4703135 4703196 -113159431 + MIR SINE MIR 120 175 -87 231 219 16 0 chr9 4703202 4703266 -113159361 - L1MC4 LINE L1 -1323 6719 6655 622 258 145 14 chr9 4703484 4703705 -113158922 + MIR SINE MIR 13 262 0 24 0 0 0 chr9 4704264 4704288 -113158339 + AT_rich Low_complexity Low_complexity 1 24 0 1724 127 0 4 chr9 4704302 4704561 -113158066 + AluSx SINE Alu 34 291 -21 30 27 0 0 chr9 4704566 4704603 -113158024 + AT_rich Low_complexity Low_complexity 1 37 0 3804 100 32 12 chr9 4704607 4705208 -113157419 - L1MA3 LINE L1 -1 6304 5692 467 156 13 0 chr9 4705853 4705930 -113156697 - AluJ/FLAM SINE Alu -228 84 7 519 240 20 41 chr9 4706096 4706292 -113156335 - L1ME4a LINE L1 -188 5933 5742 1044 241 130 50 chr9 4706297 4707033 -113155594 - LTR50 LTR ERVL 0 795 1 237 150 0 0 chr9 4707092 4707132 -113155495 - L1ME4a LINE L1 -459 5662 5623 2293 111 0 0 chr9 4708267 4708565 -113154062 - AluSx SINE Alu -9 303 6 346 320 74 25 chr9 4708590 4708834 -113153793 - L1ME4a LINE L1 -49 6072 5817 2403 73 0 0 chr9 4709701 4710018 -113152609 - AluSp SINE Alu 0 317 1 318 311 75 12 chr9 4710251 4710412 -113152215 - L3b LINE CR1 -212 1371 1201 581 188 38 0 chr9 4711082 4711215 -113151412 - Charlie1 DNA MER1_type -5 2756 2619 * 1060 173 17 35 chr9 4711208 4711228 -113151399 - Charlie1 DNA MER1_type -2534 227 208 2373 94 3 0 chr9 4711228 4711527 -113151100 + AluSp SINE Alu 1 300 -13 1060 173 17 35 chr9 4711527 4711737 -113150890 - Charlie1 DNA MER1_type -2553 208 1 208 260 29 96 chr9 4712278 4712382 -113150245 - MIR SINE MIR -75 133 37 712 196 141 0 chr9 4712470 4712633 -113149994 - MER5A DNA MER1_type 0 189 4 2278 91 3 3 chr9 4713571 4713867 -113148760 + AluSx SINE Alu 14 309 -3 313 238 114 0 chr9 4715380 4715485 -113147142 - L1ME4a LINE L1 -27 6094 5978 487 246 36 0 chr9 4715609 4715719 -113146908 - MER81 DNA DNA 0 114 1 2357 92 3 0 chr9 4716131 4716435 -113146192 + AluSp SINE Alu 1 305 -8 212 270 54 14 chr9 4716636 4716710 -113145917 + MIR SINE MIR 39 115 -93 1838 145 24 17 chr9 4716730 4717019 -113145608 - AluJb SINE Alu -21 291 1 227 179 30 60 chr9 4717019 4717086 -113145541 + MIR SINE MIR 104 168 -94 22 0 0 0 chr9 4717729 4717751 -113144876 + AT_rich Low_complexity Low_complexity 1 22 0 451 231 11 0 chr9 4718290 4718381 -113144246 - MER81 DNA DNA -21 93 2 1946 147 3 0 chr9 4719133 4719425 -113143202 + AluSx SINE Alu 1 293 -19 1993 152 7 7 chr9 4719760 4720070 -113142557 - AluSx SINE Alu -2 310 1 270 116 0 0 chr9 4720204 4720247 -113142380 + (TGAA)n Simple_repeat Simple_repeat 3 45 0 290 355 80 57 chr9 4720247 4720735 -113141892 - L2 LINE L2 -2 3311 2813 1308 183 141 8 chr9 4720742 4721004 -113141623 + AluJo SINE Alu 1 297 -5 624 263 0 15 chr9 4721004 4721137 -113141490 + AluJo/FRAM SINE Alu 135 265 -47 25 0 0 0 chr9 4721165 4721190 -113141437 + AT_rich Low_complexity Low_complexity 1 25 0 40713 32 24 1 chr9 4721204 4727216 -113135411 - L1PA3 LINE L1 0 6155 2 21 0 0 0 chr9 4727225 4727246 -113135381 + AT_rich Low_complexity Low_complexity 1 21 0 225 263 66 46 chr9 4727260 4727412 -113135215 - L1ME4a LINE L1 -6 6115 5961 313 301 38 30 chr9 4727420 4727553 -113135074 - L1ME4a LINE L1 -193 5928 5795 208 208 51 168 chr9 4727721 4727918 -113134709 - L2 LINE L2 -107 3165 2992 730 163 16 8 chr9 4728469 4728598 -113134029 + FLAM_C SINE Alu 1 130 -3 189 254 102 0 chr9 4728920 4728979 -113133648 + L3 LINE CR1 1189 1253 -324 486 283 133 52 chr9 4729022 4729422 -113133205 + L2 LINE L2 2828 3259 -54 2272 107 17 0 chr9 4729566 4729866 -113132761 - AluSg SINE Alu -5 305 1 648 191 27 48 chr9 4730079 4730226 -113132401 - MIR SINE MIR -55 207 64 427 131 0 24 chr9 4731760 4731844 -113130783 + (GGAA)n Simple_repeat Simple_repeat 3 84 0 228 213 197 57 chr9 4731902 4732024 -113130603 - MIR SINE MIR -43 219 81 258 106 0 0 chr9 4732508 4732555 -113130072 + (TC)n Simple_repeat Simple_repeat 1 47 0 2014 165 46 6 chr9 4733167 4733518 -113129109 + MLT1A1 LTR MaLR 1 365 0 217 180 0 66 chr9 4733615 4733676 -113128951 + A-rich Low_complexity Low_complexity 3 59 0 2080 135 5 53 chr9 4733721 4734100 -113128527 + MER46B DNA MER2_type 1 236 0 450 0 0 0 chr9 4735646 4735696 -113126931 + (TG)n Simple_repeat Simple_repeat 2 51 0 765 146 7 42 chr9 4735697 4735841 -113126786 - FLAM_C SINE Alu 0 143 5 835 254 42 5 chr9 4735845 4736058 -113126569 + MIR SINE MIR 42 262 0 2358 69 13 10 chr9 4738505 4738809 -113123818 + AluY SINE Alu 2 306 -5 180 281 0 0 chr9 4738994 4739058 -113123569 - L2 LINE L2 -1064 2250 2187 286 258 118 55 chr9 4739238 4739509 -113123118 - L2 LINE L2 -1282 2032 1745 579 272 19 0 chr9 4739889 4740051 -113122576 + MIR SINE MIR 77 241 -21 937 197 95 61 chr9 4740072 4740336 -113122291 - L1MA10 LINE L1 0 6334 6062 565 250 41 6 chr9 4740465 4740637 -113121990 + MIR SINE MIR 63 240 -22 2435 90 0 0 chr9 4740682 4740983 -113121644 - AluSx SINE Alu -11 301 1 2222 108 0 0 chr9 4742792 4743078 -113119549 + AluSx SINE Alu 1 286 -26 311 333 83 6 chr9 4743746 4743926 -113118701 - MIR SINE MIR -7 255 62 1826 162 13 7 chr9 4744658 4744961 -113117666 - AluJb SINE Alu -7 305 1 1643 204 3 0 chr9 4745157 4745451 -113117176 + AluJb SINE Alu 6 300 -12 207 69 0 0 chr9 4746773 4746802 -113115825 + (TA)n Simple_repeat Simple_repeat 2 30 0 270 0 0 0 chr9 4749103 4749133 -113113494 + (TG)n Simple_repeat Simple_repeat 1 30 0 270 0 0 0 chr9 4749132 4749162 -113113465 + (GA)n Simple_repeat Simple_repeat 1 30 0 591 288 35 5 chr9 4749222 4749420 -113113207 - MIR SINE MIR -12 250 47 562 302 74 23 chr9 4751815 4752030 -113110597 + MIR SINE MIR 22 247 -15 575 66 0 0 chr9 4752041 4752117 -113110510 + L1PA8 LINE L1 6095 6170 -2 277 300 0 0 chr9 4752138 4752218 -113110409 + (CTG)n Simple_repeat Simple_repeat 1 80 0 258 215 0 0 chr9 4752219 4752298 -113110329 + (CTA)n Simple_repeat Simple_repeat 2 80 0 459 0 0 0 chr9 4752363 4752414 -113110213 + (CA)n Simple_repeat Simple_repeat 2 52 0 2017 148 0 0 chr9 4752420 4752717 -113109910 - AluJb SINE Alu -15 297 1 1806 174 0 32 chr9 4752761 4753077 -113109550 - AluJb SINE Alu -6 306 1 436 171 98 0 chr9 4754179 4754261 -113108366 + MER3 DNA MER1_type 2 91 -118 230 143 57 0 chr9 4754246 4754281 -113108346 - Charlie5 DNA MER1_type -2573 39 3 * 417 301 56 4 chr9 4754353 4754602 -113108025 + L2 LINE L2 1939 2200 -1114 * 567 255 87 10 chr9 4754600 4754796 -113107831 - MIR SINE MIR -9 253 43 338 304 181 24 chr9 4754860 4755241 -113107386 + L2 LINE L2 2273 2713 -601 2312 99 3 0 chr9 4755242 4755536 -113107091 + AluSx SINE Alu 2 296 -16 225 338 39 26 chr9 4755723 4755877 -113106750 + L2 LINE L2 2939 3094 -178 187 296 43 62 chr9 4757290 4757452 -113105175 + L2 LINE L2 2933 3091 -181 264 256 51 34 chr9 4759594 4759711 -113102916 - MIR SINE MIR -50 212 94 1909 166 0 7 chr9 4760167 4760469 -113102158 + AluJb SINE Alu 1 300 -12 2189 108 0 3 chr9 4761308 4761622 -113101005 - AluSx SINE Alu 0 313 1 2852 66 56 13 chr9 4761641 4762037 -113100590 - L1PA12 LINE L1 -15 6153 5741 1035 126 16 60 chr9 4762078 4762260 -113100367 - FRAM SINE Alu -8 168 1 2348 95 3 0 chr9 4762345 4762639 -113099988 + AluSx SINE Alu 1 295 -17 345 258 31 21 chr9 4763099 4763196 -113099431 + L2 LINE L2 3166 3263 -9 1002 254 29 41 chr9 4763491 4763833 -113098794 + MER46C DNA MER2_type 1 338 0 3364 176 15 45 chr9 4763946 4764303 -113098324 + MER82 DNA MER2_type 3 369 -284 1623 157 95 4 chr9 4764303 4764577 -113098050 - AluJo SINE Alu -13 299 1 1849 168 7 0 chr9 4764583 4764874 -113097753 - AluJo SINE Alu -15 297 5 3364 176 15 45 chr9 4764874 4765180 -113097447 + MER82 DNA MER2_type 374 653 0 22 35 0 0 chr9 4765704 4765733 -113096894 + AT_rich Low_complexity Low_complexity 1 29 0 866 132 0 22 chr9 4766309 4766445 -113096182 - FLAM_C SINE Alu -5 138 6 1941 132 170 16 chr9 4767304 4767675 -113094952 + MSTA LTR MaLR 1 428 0 508 256 34 0 chr9 4768391 4768508 -113094119 - MER45A DNA AcHobo 0 178 58 231 146 0 0 chr9 4768888 4768929 -113093698 + (TG)n Simple_repeat Simple_repeat 2 42 0 299 354 35 0 chr9 4769071 4769184 -113093443 - L3 LINE CR1 -224 1353 1237 * 435 287 172 4 chr9 4769155 4769399 -113093228 + L3 LINE CR1 1248 1532 -45 1812 33 0 0 chr9 4769884 4770096 -113092531 - L1PA2 LINE L1 0 6155 5944 2517 21 3 0 chr9 4770096 4770384 -113092243 + L1PA2 LINE L1 5652 5940 -215 2443 91 0 10 chr9 4770642 4770950 -113091677 + AluSx SINE Alu 1 305 -7 745 125 8 33 chr9 4770958 4771078 -113091549 + FLAM_C SINE Alu 1 117 -16 23 33 0 0 chr9 4771078 4771108 -113091519 + AT_rich Low_complexity Low_complexity 1 30 0 1400 148 14 9 chr9 4771190 4771406 -113091221 - AluSx SINE Alu -95 217 1 2123 124 3 0 chr9 4771997 4772301 -113090326 - AluSx SINE Alu 0 305 1 21 71 0 0 chr9 4772394 4772436 -113090191 + AT_rich Low_complexity Low_complexity 1 42 0 322 313 37 12 chr9 4772570 4772733 -113089894 - L1ME4a LINE L1 -219 5902 5736 246 254 0 0 chr9 4774921 4774980 -113087647 + (TAA)n Simple_repeat Simple_repeat 2 60 0 624 242 55 28 chr9 4775012 4775194 -113087433 - MIR SINE MIR -74 188 2 1035 184 9 55 chr9 4775225 4775377 -113087250 + MER3 DNA MER1_type 2 143 -66 909 119 0 15 chr9 4775377 4775511 -113087116 - FLAM_C SINE Alu -1 132 1 1035 184 9 55 chr9 4775511 4775575 -113087052 + MER3 DNA MER1_type 143 208 -1 369 189 131 143 chr9 4776119 4776294 -113086333 - MER106B DNA MER1_type -57 1002 7 636 206 58 5 chr9 4776608 4776695 -113085932 + MER5C DNA MER1_type 76 157 -167 1617 131 21 100 chr9 4776695 4777024 -113085603 + AluYb8 SINE Alu 1 303 -15 636 206 58 5 chr9 4777024 4777125 -113085502 + MER5C DNA MER1_type 157 274 -50 250 302 63 45 chr9 4777864 4778086 -113084541 + MIR SINE MIR 24 249 -13 564 278 125 33 chr9 4778167 4778732 -113083895 + L2 LINE L2 2646 3270 -2 389 221 14 83 chr9 4778824 4778969 -113083658 + MIR SINE MIR 57 191 -71 2323 102 7 3 chr9 4779350 4779653 -113082974 + AluSx SINE Alu 3 312 0 554 175 143 0 chr9 4780227 4780353 -113082274 - MIR SINE MIR -106 156 13 203 138 0 0 chr9 4780807 4780836 -113081791 + (TGAA)n Simple_repeat Simple_repeat 2 30 0 10550 131 124 1 chr9 4782115 4783868 -113078759 - L1M1 LINE L1 -4317 3248 1280 1340 108 8 121 chr9 4783870 4784119 -113078508 + AluSg/x SINE Alu 82 302 -8 1292 131 5 15 chr9 4784225 4784423 -113078204 + AluSg/x SINE Alu 110 305 -5 2302 105 0 0 chr9 4785380 4785674 -113076953 + AluSx SINE Alu 1 294 -18 515 97 84 0 chr9 4785675 4785829 -113076798 + (TA)n Simple_repeat Simple_repeat 1 167 0 205 182 0 0 chr9 4785883 4785916 -113076711 + (CATATA)n Simple_repeat Simple_repeat 4 36 0 25 31 0 0 chr9 4786034 4786066 -113076561 + AT_rich Low_complexity Low_complexity 1 32 0 202 319 121 45 chr9 4787225 4787382 -113075245 - L2 LINE L2 -8 3264 3096 * 689 169 245 0 chr9 4787378 4787562 -113075065 + MIR SINE MIR 8 236 -26 387 155 0 14 chr9 4787583 4787654 -113074973 + MLT1C LTR MaLR 398 467 0 1551 185 10 20 chr9 4787820 4788112 -113074515 - AluJo SINE Alu -23 289 1 201 59 88 0 chr9 4788171 4788205 -113074422 + A-rich Low_complexity Low_complexity 2 38 0 816 181 0 0 chr9 4788205 4788338 -113074289 + FLAM_C SINE Alu 1 133 0 345 361 67 13 chr9 4788546 4788845 -113073782 + L2 LINE L2 2077 2391 -923 702 278 112 46 chr9 4789078 4789427 -113073200 + L2 LINE L2 2942 3313 0 47 0 0 0 chr9 4790048 4790095 -113072532 + AT_rich Low_complexity Low_complexity 1 47 0 324 293 138 22 chr9 4790341 4790566 -113072061 - MIR SINE MIR -6 256 6 537 219 62 23 chr9 4790974 4791102 -113071525 - FLAM_C SINE Alu -8 135 3 1986 131 17 10 chr9 4791911 4792208 -113070419 - AluJb SINE Alu -13 299 1 1046 151 12 0 chr9 4792220 4792386 -113070241 - AluSg/x SINE Alu -5 307 140 204 200 0 0 chr9 4794165 4794210 -113068417 + (CCG)n Simple_repeat Simple_repeat 2 46 0 2146 109 13 3 chr9 4795583 4795886 -113066741 + AluY SINE Alu 3 308 -3 2035 124 7 3 chr9 4795932 4796223 -113066404 + AluSx SINE Alu 3 294 -18 317 267 33 27 chr9 4796258 4796408 -113066219 + L1ME4a LINE L1 5719 5869 -252 708 174 16 0 chr9 4796494 4796615 -113066012 + FLAM_C SINE Alu 2 124 -19 1530 173 0 26 chr9 4796753 4797019 -113065608 + AluJo SINE Alu 38 296 -16 735 316 0 0 chr9 4797170 4797379 -113065248 + MIR SINE MIR 28 236 -26 957 64 0 0 chr9 4797516 4797626 -113065001 + AluSq SINE Alu 109 218 -95 1616 165 0 29 chr9 4797710 4797983 -113064644 + AluJo SINE Alu 1 265 -47 2858 123 186 6 chr9 4798016 4798543 -113064084 - LTR29 LTR ERV1 0 622 1 21 89 0 0 chr9 4798606 4798662 -113063965 + AT_rich Low_complexity Low_complexity 1 56 0 2168 99 3 20 chr9 4798686 4798988 -113063639 + AluSq SINE Alu 1 297 -16 1242 198 84 62 chr9 4799024 4799393 -113063234 - LTR8A LTR ERV1 0 727 351 2140 117 0 0 chr9 4799393 4799676 -113062951 + AluSq SINE Alu 1 283 -30 1136 145 40 122 chr9 4799695 4799991 -113062636 - LTR8A LTR ERV1 -337 390 119 2238 117 7 0 chr9 4799993 4800301 -113062326 + AluSx SINE Alu 3 312 0 1316 117 0 0 chr9 4800301 4800480 -113062147 + AluSg/x SINE Alu 132 310 -2 683 177 53 0 chr9 4800480 4800593 -113062034 - LTR8 LTR ERV1 -572 119 1 287 316 41 0 chr9 4800690 4800788 -113061839 - MIR SINE MIR -21 241 140 447 301 15 0 chr9 4800823 4800959 -113061668 - MIR SINE MIR -110 152 15 2295 105 0 10 chr9 4800966 4801270 -113061357 - AluSg SINE Alu -9 301 1 266 257 0 0 chr9 4802542 4802612 -113060015 + MIR SINE MIR 66 135 -127 464 284 123 89 chr9 4802654 4803105 -113059522 + L1ME4a LINE L1 5372 5828 -293 252 0 0 0 chr9 4803164 4803192 -113059435 + (CA)n Simple_repeat Simple_repeat 2 29 0 234 0 0 0 chr9 4803200 4803226 -113059401 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 2037 113 18 0 chr9 4803230 4803505 -113059122 - AluSx SINE Alu -32 280 1 739 155 9 0 chr9 4803692 4803808 -113058819 + AluSg/x SINE Alu 185 301 -9 924 125 0 22 chr9 4804384 4804520 -113058107 + AluSq/x SINE Alu 7 139 -173 671 231 21 0 chr9 4804757 4804900 -113057727 + MER58B DNA MER1_type 181 326 -15 1520 199 11 11 chr9 4805019 4805300 -113057327 + AluJo SINE Alu 1 281 -31 380 250 75 19 chr9 4806918 4807078 -113055549 - L1MC5 LINE L1 -184 7777 7609 641 281 59 64 chr9 4807731 4808187 -113054440 - L1ME4a LINE L1 -178 5943 5490 346 114 0 0 chr9 4808517 4808561 -113054066 + MER72 LTR ERV1 585 628 -94 811 172 0 0 chr9 4808913 4809035 -113053592 + FLAM_C SINE Alu 1 122 -11 734 274 10 82 chr9 4809089 4809381 -113053246 - MER102a DNA MER1_type -18 312 42 1440 156 0 0 chr9 4809942 4810153 -113052474 + AluSg/x SINE Alu 82 292 -20 1025 266 135 17 chr9 4810253 4810719 -113051908 + LTR33 LTR ERVL 1 521 0 482 308 49 90 chr9 4810756 4811146 -113051481 + L2 LINE L2 2872 3245 -27 2149 112 0 13 chr9 4812742 4813045 -113049582 - AluY SINE Alu -12 299 1 1968 119 0 63 chr9 4813738 4813889 -113048738 + AluSx SINE Alu 1 123 -193 1983 113 7 7 chr9 4813889 4814171 -113048456 + AluSx SINE Alu 21 302 -10 1968 119 0 63 chr9 4814171 4814354 -113048273 + AluSx SINE Alu 123 316 0 2359 104 0 7 chr9 4814646 4814953 -113047674 + AluSx SINE Alu 1 305 -7 542 259 56 0 chr9 4816694 4816837 -113045790 + MER117 DNA MER1_type 12 162 -35 341 259 229 15 chr9 4817290 4817495 -113045132 + MIR SINE MIR 12 260 -2 2055 158 0 0 chr9 4817580 4817890 -113044737 - AluJb SINE Alu -2 310 1 442 136 0 23 chr9 4818277 4818365 -113044262 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 2704 45 0 0 chr9 4818660 4818971 -113043656 + AluYa5 SINE Alu 1 311 0 1823 145 9 60 chr9 4819556 4819874 -113042753 + AluSx SINE Alu 1 302 -10 2167 109 33 0 chr9 4819913 4820215 -113042412 + AluSx SINE Alu 1 312 0 424 181 106 0 chr9 4820307 4820401 -113042226 + MER20 DNA MER1_type 24 127 -92 68 55 0 0 chr9 4821624 4821734 -113040893 + AT_rich Low_complexity Low_complexity 1 110 0 1609 198 63 25 chr9 4822159 4822554 -113040073 + L1MC4 LINE L1 7357 7766 -276 1826 156 14 3 chr9 4823063 4823358 -113039269 - AluJb SINE Alu -14 298 1 21 0 0 0 chr9 4824477 4824498 -113038129 + AT_rich Low_complexity Low_complexity 1 21 0 183 80 0 0 chr9 4825037 4825062 -113037565 + (TTCC)n Simple_repeat Simple_repeat 4 28 0 200 275 0 0 chr9 4825068 4825108 -113037519 + polypyrimidine Low_complexity Low_complexity 4 43 0 3506 112 112 0 chr9 4825499 4826070 -113036557 + LTR24C LTR ERV1 1 635 0 1632 167 113 130 chr9 4826591 4827238 -113035389 - LTR1B LTR ERV1 -81 745 110 570 318 0 6 chr9 4827626 4827805 -113034822 + (CA)n Simple_repeat Simple_repeat 2 179 0 458 316 0 6 chr9 4827838 4828198 -113034429 + (CA)n Simple_repeat Simple_repeat 1 357 0 417 363 0 6 chr9 4828280 4828459 -113034168 + (CA)n Simple_repeat Simple_repeat 2 179 0 8533 48 1 2 chr9 4828843 4830539 -113032088 + L1PA3 LINE L1 4315 6007 -148 2115 115 0 3 chr9 4830836 4831124 -113031503 + AluSq SINE Alu 1 308 0 190 0 0 0 chr9 4831124 4831145 -113031482 + (TAA)n Simple_repeat Simple_repeat 2 180 0 404 250 24 40 chr9 4831261 4831385 -113031242 + L2 LINE L2 3151 3272 0 301 291 13 0 chr9 4831415 4831494 -113031133 - MIR3 SINE MIR -20 188 109 229 288 41 27 chr9 4831564 4831637 -113030990 - L2 LINE L2 -1 3312 3239 806 303 73 23 chr9 4831831 4832456 -113030171 - L2 LINE L2 -60 3253 2590 705 250 66 0 chr9 4832884 4833096 -113029531 - MER20B DNA MER1_type 0 783 558 1084 214 140 84 chr9 4833112 4833505 -113029122 - MER20B DNA MER1_type -366 417 3 216 336 136 18 chr9 4833559 4833669 -113028958 + L2 LINE L2 3145 3267 -5 21 0 0 0 chr9 4835440 4835461 -113027166 + AT_rich Low_complexity Low_complexity 1 21 0 2336 94 0 3 chr9 4836738 4837037 -113025590 - AluSx SINE Alu -14 298 1 1292 125 100 0 chr9 4837116 4837316 -113025311 + AluSg/x SINE Alu 86 305 -7 608 332 16 24 chr9 4837317 4837570 -113025057 - MIR SINE MIR -5 257 7 23 0 0 0 chr9 4838031 4838054 -113024573 + AT_rich Low_complexity Low_complexity 1 23 0 820 231 95 18 chr9 4838367 4838588 -113024039 + MIR SINE MIR 9 246 -16 180 349 35 35 chr9 4838939 4839025 -113023602 + MIR SINE MIR 45 130 -78 1772 240 41 7 chr9 4839055 4839468 -113023159 - L1ME1 LINE L1 -25 6141 5715 286 155 42 70 chr9 4839470 4839541 -113023086 + MIR SINE MIR 120 188 -74 402 115 0 0 chr9 4839552 4839613 -113023014 + (TA)n Simple_repeat Simple_repeat 2 62 0 606 258 145 14 chr9 4839831 4840052 -113022575 + MIR SINE MIR 13 262 0 24 0 0 0 chr9 4840611 4840635 -113021992 + AT_rich Low_complexity Low_complexity 1 24 0 1729 127 0 4 chr9 4840649 4840908 -113021719 + AluSx SINE Alu 34 291 -21 30 27 0 0 chr9 4840913 4840950 -113021677 + AT_rich Low_complexity Low_complexity 1 37 0 4123 100 32 12 chr9 4840954 4841555 -113021072 - L1MA3 LINE L1 -1 6304 5692 496 156 13 0 chr9 4842200 4842277 -113020350 - AluJ/FLAM SINE Alu -228 84 7 621 235 136 60 chr9 4842286 4842639 -113019988 - L1ME4a LINE L1 0 6121 5742 1282 223 143 61 chr9 4842644 4843367 -113019260 - LTR50 LTR ERVL 0 795 14 257 150 0 0 chr9 4843439 4843479 -113019148 - L1ME4a LINE L1 -459 5662 5623 2397 85 0 0 chr9 4844614 4844909 -113017718 - AluSx SINE Alu -9 303 9 425 222 163 0 chr9 4844945 4845080 -113017547 + L1ME4a LINE L1 5964 6120 -1 1656 196 3 7 chr9 4845508 4845809 -113016818 + AluJb SINE Alu 1 300 -12 22 0 0 0 chr9 4845809 4845831 -113016796 + AT_rich Low_complexity Low_complexity 1 22 0 884 231 100 9 chr9 4846109 4846338 -113016289 - MIR SINE MIR -12 250 1 1581 209 3 0 chr9 4846437 4846724 -113015903 - AluJo SINE Alu -20 292 5 2239 117 3 0 chr9 4846939 4847237 -113015390 + AluSg SINE Alu 1 299 -11 838 182 69 19 chr9 4847543 4847702 -113014925 - AluJo SINE Alu -24 288 122 1460 194 3 26 chr9 4847841 4848145 -113014482 - AluJo SINE Alu -15 297 1 2103 99 18 7 chr9 4848152 4848434 -113014193 - AluSx SINE Alu -27 285 1 762 179 0 30 chr9 4848716 4848850 -113013777 + FLAM_C SINE Alu 2 131 -2 22 0 0 0 chr9 4850059 4850081 -113012546 + AT_rich Low_complexity Low_complexity 1 22 0 339 293 75 45 chr9 4850495 4850628 -113011999 - L2 LINE L2 0 3272 3136 367 231 95 27 chr9 4850629 4850776 -113011851 + L1ME4a LINE L1 5713 5869 -252 514 269 99 13 chr9 4850848 4851034 -113011593 + L1ME4a LINE L1 5443 5657 -505 679 213 28 0 chr9 4851037 4851178 -113011449 + Charlie1 DNA MER1_type 5 149 -2612 * 1365 141 71 24 chr9 4851173 4851470 -113011157 + Charlie1 DNA MER1_type 2420 2730 -31 1137 154 135 5 chr9 4851576 4851784 -113010843 + MER46A DNA MER2_type 2 236 0 292 258 54 21 chr9 4852207 4852300 -113010327 + L1ME4a LINE L1 5956 6051 -70 33 25 0 0 chr9 4852323 4852363 -113010264 + AT_rich Low_complexity Low_complexity 1 40 0 1899 159 28 0 chr9 4852512 4852801 -113009826 - AluJo SINE Alu -15 297 1 622 244 73 6 chr9 4853019 4853183 -113009444 - MIR SINE MIR -3 259 85 410 206 20 0 chr9 4853469 4853571 -113009056 + CT-rich Low_complexity Low_complexity 1 104 0 2118 144 0 3 chr9 4853593 4853905 -113008722 - AluJo SINE Alu -1 311 1 1648 179 16 52 chr9 4854356 4854645 -113007982 - MER4D LTR ERV1 0 903 628 1890 174 26 0 chr9 4854645 4854949 -113007678 + AluJo SINE Alu 1 312 0 1648 179 16 52 chr9 4854949 4855022 -113007605 - MER4D LTR ERV1 -275 628 554 1781 147 35 7 chr9 4855042 4855328 -113007299 - MER49 LTR ERV1 -629 294 1 421 324 7 7 chr9 4855414 4855556 -113007071 + MIR SINE MIR 61 202 -60 1942 181 86 49 chr9 4855556 4856042 -113006585 - LTR54 LTR ERV1 0 510 7 263 333 79 8 chr9 4856316 4856442 -113006185 + MIR SINE MIR 48 182 -80 1305 189 58 0 chr9 4856943 4857225 -113005402 - AluJo SINE Alu 0 306 10 1179 233 78 33 chr9 4857226 4857666 -113004961 + LTR56 LTR ERV1 8 610 0 227 77 0 26 chr9 4857684 4857723 -113004904 + (GAAAA)n Simple_repeat Simple_repeat 4 41 0 2298 69 24 3 chr9 4857745 4858035 -113004592 + AluSq SINE Alu 1 296 -17 1774 104 150 0 chr9 4858416 4858676 -113003951 - AluSx SINE Alu -2 300 2 182 196 62 93 chr9 4858702 4858799 -113003828 - MIR SINE MIR -70 192 99 1520 95 60 0 chr9 4859245 4859477 -113003150 - L1MA8 LINE L1 -4 6287 6042 1100 124 12 6 chr9 4859524 4859693 -113002934 - AluSg/x SINE Alu -16 296 127 192 324 0 15 chr9 4859795 4859863 -113002764 + L2 LINE L2 2673 2739 -575 2325 102 0 6 chr9 4859920 4860234 -113002393 - AluSx SINE Alu 0 312 1 343 351 38 15 chr9 4860564 4860695 -113001932 + MER5A DNA MER1_type 8 141 -48 185 246 222 56 chr9 4860597 4860704 -113001923 - MER5B DNA MER1_type -29 149 17 * 1567 176 0 25 chr9 4860704 4860983 -113001644 + AluJb SINE Alu 1 272 -40 185 246 222 56 chr9 4860983 4861001 -113001626 - MER5B DNA MER1_type -161 17 3 2052 108 0 0 chr9 4861137 4861416 -113001211 + AluY SINE Alu 1 279 -32 321 130 0 87 chr9 4862760 4862829 -112999798 + L1MC4 LINE L1 6471 6533 -1509 1220 172 102 19 chr9 4862829 4863085 -112999542 + AluJo SINE Alu 17 293 -19 507 261 41 60 chr9 4863086 4863304 -112999323 + L1MC4 LINE L1 6534 6747 -1295 24 0 0 0 chr9 4863316 4863340 -112999287 + AT_rich Low_complexity Low_complexity 1 24 0 1745 114 0 0 chr9 4863352 4863579 -112999048 + AluSg SINE Alu 1 227 -83 1292 198 68 0 chr9 4864691 4864928 -112997699 - AluJb SINE Alu -59 253 1 2223 150 0 0 chr9 4864928 4865289 -112997338 - L1 LINE L1 -1142 5004 4644 6234 95 16 15 chr9 4865294 4866160 -112996467 - L1MA2 LINE L1 0 6304 5438 16185 147 30 86 chr9 4866160 4866657 -112995970 - L1 LINE L1 -902 6663 6140 1311 140 0 0 chr9 4866657 4866843 -112995784 - AluSg/x SINE Alu -2 310 125 16185 147 30 86 chr9 4866843 4867451 -112995176 - L1 LINE L1 -1425 6140 5500 1639 151 45 34 chr9 4867451 4867742 -112994885 - AluJb SINE Alu -8 304 11 16185 147 30 86 chr9 4867742 4867898 -112994729 - L1 LINE L1 -2065 5500 5337 1696 158 92 0 chr9 4867898 4868170 -112994457 + AluSx SINE Alu 1 297 -15 16185 147 30 86 chr9 4868170 4869772 -112992855 - L1 LINE L1 -2228 5337 3648 2777 90 0 37 chr9 4869772 4869844 -112992783 - THE1B LTR MaLR 0 364 291 2218 119 0 0 chr9 4869844 4870147 -112992480 + AluSg SINE Alu 1 303 -7 2777 90 0 37 chr9 4870147 4870452 -112992175 - THE1B LTR MaLR -73 291 1 16185 147 30 86 chr9 4870452 4870834 -112991793 - L1 LINE L1 -3917 3648 3246 2927 73 0 8 chr9 4870834 4871203 -112991424 - L1PA8 LINE L1 0 6172 5807 16185 147 30 86 chr9 4871203 4872498 -112990129 - L1 LINE L1 -4319 3246 1881 2262 114 0 3 chr9 4872498 4872805 -112989822 + AluSx SINE Alu 1 306 -6 16185 147 30 86 chr9 4872805 4873183 -112989444 - L1 LINE L1 -5684 1881 1484 2326 101 14 0 chr9 4873183 4873479 -112989148 + AluSx SINE Alu 1 300 -12 16185 147 30 86 chr9 4873479 4874331 -112988296 - L1 LINE L1 -6081 1484 1081 315 203 0 0 chr9 4875098 4875167 -112987460 + A-rich Low_complexity Low_complexity 1 69 0 5690 178 47 6 chr9 4875183 4876213 -112986414 - L1 LINE L1 -6489 1076 5 1815 131 3 91 chr9 4876230 4876559 -112986068 + AluSx SINE Alu 1 300 -12 2562 184 89 7 chr9 4876559 4877134 -112985493 + L1MB7 LINE L1 5487 6108 -76 1899 162 0 20 chr9 4877246 4877549 -112985078 - AluSq SINE Alu -16 297 1 1322 143 0 46 chr9 4877904 4878121 -112984506 - AluJb SINE Alu -105 207 1 370 109 0 0 chr9 4878127 4878182 -112984445 - MLT2B1 LTR ERVL -465 55 1 313 347 0 0 chr9 4878186 4878284 -112984343 - L1MC/D LINE L1 -2246 5562 5465 2203 118 0 13 chr9 4878380 4878694 -112983933 - AluSg SINE Alu 0 310 1 24 0 0 0 chr9 4878706 4878730 -112983897 + AT_rich Low_complexity Low_complexity 1 24 0 507 261 41 60 chr9 4878742 4878960 -112983667 - L1MC4 LINE L1 -1295 6747 6534 1203 176 102 19 chr9 4878961 4879217 -112983410 - AluJo SINE Alu -19 293 17 321 130 0 87 chr9 4879217 4879286 -112983341 - L1MC4 LINE L1 -1509 6533 6471 2052 108 0 0 chr9 4880630 4880909 -112981718 - AluY SINE Alu -32 279 1 185 246 222 56 chr9 4881045 4881063 -112981564 + MER5B DNA MER1_type 3 17 -161 1539 179 0 25 chr9 4881063 4881342 -112981285 - AluJb SINE Alu -40 272 1 185 246 222 56 chr9 4881342 4881449 -112981178 + MER5B DNA MER1_type 17 149 -29 * 363 344 38 15 chr9 4881351 4881482 -112981145 - MER5A DNA MER1_type -48 141 8 2327 103 0 6 chr9 4881812 4882124 -112980503 + AluSx SINE Alu 1 310 -2 192 324 0 15 chr9 4882181 4882249 -112980378 - L2 LINE L2 -575 2739 2673 1130 120 13 0 chr9 4882362 4882520 -112980107 + AluSg/x SINE Alu 137 296 -16 1459 95 60 0 chr9 4882567 4882799 -112979828 + L1MA8 LINE L1 6042 6287 -4 1674 107 149 0 chr9 4883368 4883630 -112978997 + AluSx SINE Alu 2 302 0 2078 128 21 0 chr9 4884008 4884298 -112978329 - AluSq SINE Alu -16 297 2 2003 131 3 20 chr9 4884718 4885023 -112977604 - AluJo SINE Alu -12 300 1 1994 112 20 7 chr9 4885346 4885641 -112976986 - AluSx SINE Alu -13 299 1 756 239 68 27 chr9 4885690 4885953 -112976674 - MLT2D LTR ERVL -140 274 1 201 179 26 0 chr9 4886072 4886111 -112976516 + CT-rich Low_complexity Low_complexity 2 41 0 339 248 19 38 chr9 4887095 4887200 -112975427 - MLT1K LTR MaLR -27 561 459 1840 173 127 0 chr9 4887544 4887867 -112974760 - MER47A DNA MER2_type 0 366 3 502 223 234 5 chr9 4888221 4888418 -112974209 + MIR SINE MIR 21 262 0 1615 177 23 23 chr9 4888480 4888779 -112973848 - AluJo SINE Alu -13 299 1 438 296 46 15 chr9 4888880 4889076 -112973551 + MIR SINE MIR 61 262 0 849 232 170 26 chr9 4889230 4889632 -112972995 - MLT1K LTR MaLR -37 551 20 1757 173 7 19 chr9 4889731 4890038 -112972589 + AluJb SINE Alu 1 303 -9 2269 110 7 0 chr9 4890186 4890494 -112972133 - AluSx SINE Alu -2 310 1 372 294 0 0 chr9 4891191 4891609 -112971018 + (TG)n Simple_repeat Simple_repeat 1 418 0 455 295 1 0 chr9 4891641 4892557 -112970070 + (TG)n Simple_repeat Simple_repeat 1 917 0 509 311 0 7 chr9 4892576 4892724 -112969903 + (TG)n Simple_repeat Simple_repeat 1 147 0 25 51 0 0 chr9 4893077 4893116 -112969511 + AT_rich Low_complexity Low_complexity 1 39 0 1925 119 0 80 chr9 4893192 4893529 -112969098 - AluJb SINE Alu -2 310 1 2342 107 0 0 chr9 4893645 4893953 -112968674 - AluSq SINE Alu -5 308 1 21 0 0 0 chr9 4894106 4894127 -112968500 + AT_rich Low_complexity Low_complexity 1 21 0 2113 111 30 3 chr9 4894333 4894631 -112967996 + AluSc SINE Alu 1 306 -3 23 0 0 0 chr9 4894673 4894696 -112967931 + AT_rich Low_complexity Low_complexity 1 23 0 978 163 0 18 chr9 4894889 4895055 -112967572 - MER1B DNA MER1_type -55 284 122 252 163 23 0 chr9 4895055 4895098 -112967529 + MER1B DNA MER1_type 286 329 0 497 116 16 132 chr9 4895231 4895273 -112967354 + L1PB4 LINE L1 6043 6088 -68 2349 49 0 0 chr9 4895273 4895560 -112967067 + AluSc SINE Alu 15 301 0 497 116 16 132 chr9 4895560 4895645 -112966982 + L1PB4 LINE L1 6088 6156 0 317 330 84 6 chr9 4896594 4896773 -112965854 + MER112 DNA MER1_type 50 242 -18 659 244 8 0 chr9 4896874 4897005 -112965622 + FLAM_C SINE Alu 1 132 -1 291 330 9 9 chr9 4897005 4897111 -112965516 + MIR SINE MIR 22 127 -135 992 213 29 24 chr9 4897168 4897375 -112965252 - MSTD LTR MaLR -2 394 187 615 237 0 8 chr9 4897377 4897508 -112965119 - FLAM_A SINE Alu -9 133 4 822 246 26 26 chr9 4897510 4897705 -112964922 - MSTD LTR MaLR -201 195 1 228 283 0 0 chr9 4898203 4898249 -112964378 + polypyrimidine Low_complexity Low_complexity 4 49 0 1776 152 24 20 chr9 4898270 4898566 -112964061 + AluJo SINE Alu 3 299 -13 30 0 0 0 chr9 4898567 4898597 -112964030 + AT_rich Low_complexity Low_complexity 1 30 0 198 0 0 0 chr9 4899014 4899036 -112963591 + (T)n Simple_repeat Simple_repeat 1 22 0 471 261 11 50 chr9 4900121 4900301 -112962326 - L1MC4a LINE L1 -1926 5882 5710 1324 183 117 11 chr9 4900642 4900915 -112961712 - AluSx SINE Alu -10 302 1 381 175 0 0 chr9 4901489 4901546 -112961081 + AluJ/FLAM SINE Alu 2 58 -244 628 135 162 18 chr9 4901564 4901675 -112960952 + FLAM_C SINE Alu 2 128 -5 1270 167 58 109 chr9 4901680 4901991 -112960636 + AluJb SINE Alu 1 295 -17 357 82 0 0 chr9 4903464 4903513 -112959114 + (TG)n Simple_repeat Simple_repeat 1 49 0 2366 46 70 0 chr9 4903637 4903922 -112958705 + AluY SINE Alu 1 305 -6 21 0 0 0 chr9 4904488 4904509 -112958118 + AT_rich Low_complexity Low_complexity 1 21 0 194 125 0 25 chr9 4905429 4905469 -112957158 + (TGG)n Simple_repeat Simple_repeat 3 41 0 524 289 13 0 chr9 4905554 4905706 -112956921 + MER102a DNA MER1_type 177 330 0 397 242 47 8 chr9 4906713 4906841 -112955786 - MIR3 SINE MIR -14 194 62 1257 159 34 0 chr9 4907210 4907418 -112955209 - AluJo SINE Alu -12 300 86 316 294 59 64 chr9 4907564 4907751 -112954876 - MIR3 SINE MIR -11 197 12 2482 76 7 0 chr9 4908262 4908564 -112954063 + AluSc SINE Alu 1 304 -5 217 345 115 0 chr9 4908603 4908742 -112953885 - MIR SINE MIR -47 215 61 272 319 0 0 chr9 4909147 4909241 -112953386 - MIR SINE MIR 0 262 169 25 0 0 0 chr9 4910205 4910230 -112952397 + AT_rich Low_complexity Low_complexity 1 25 0 504 284 95 9 chr9 4910487 4910698 -112951929 - MIR SINE MIR -16 246 18 182 288 0 15 chr9 4911402 4911468 -112951159 + MIR SINE MIR 15 79 -183 253 242 129 40 chr9 4912977 4913101 -112949526 - L1MC/D LINE L1 -1985 5823 5689 241 307 0 13 chr9 4914555 4914630 -112947997 + Charlie4 DNA MER1_type 1888 1961 0 612 294 63 25 chr9 4914668 4914906 -112947721 - MIR SINE MIR -3 259 13 22 35 0 0 chr9 4916835 4916864 -112945763 + AT_rich Low_complexity Low_complexity 1 29 0 28 29 0 0 chr9 4917619 4917654 -112944973 + AT_rich Low_complexity Low_complexity 1 35 0 301 270 60 60 chr9 4917788 4918003 -112944624 - L1MC4 LINE L1 -19 8023 7809 240 319 118 0 chr9 4918359 4918478 -112944149 + MIR SINE MIR 124 256 -6 443 274 127 6 chr9 4920737 4920894 -112941733 - MER102b DNA MER1_type -45 296 121 2077 111 31 0 chr9 4922670 4922959 -112939668 - AluSx SINE Alu -13 299 2 231 36 0 0 chr9 4926264 4926292 -112936335 + (T)n Simple_repeat Simple_repeat 1 28 0 2380 75 0 3 chr9 4927667 4927962 -112934665 - AluY SINE Alu -17 294 1 206 333 81 9 chr9 4928268 4928379 -112934248 + MIR SINE MIR 21 139 -123 321 157 0 0 chr9 4928566 4928617 -112934010 - MER66B LTR ERV1 -141 345 295 25 75 0 0 chr9 4928726 4928779 -112933848 + AT_rich Low_complexity Low_complexity 1 53 0 671 258 56 56 chr9 4928872 4929105 -112933522 - MIR SINE MIR -22 240 8 2504 57 7 0 chr9 4929106 4929402 -112933225 - AluY SINE Alu -13 298 1 2497 75 7 0 chr9 4930556 4930863 -112931764 + AluSg SINE Alu 1 309 -1 4362 164 23 26 chr9 4932858 4933703 -112928924 - L1MB8 LINE L1 -1 6177 5336 418 137 27 0 chr9 4933713 4933786 -112928841 - AluJo SINE Alu -11 301 227 * 804 205 47 23 chr9 4933783 4933954 -112928673 - AluJo SINE Alu -134 178 4 2229 187 52 23 chr9 4933960 4934484 -112928143 - L1MB8 LINE L1 -820 5326 4788 325 138 35 0 chr9 4934484 4934542 -112928085 + MER5B DNA MER1_type 116 175 -3 442 269 32 106 chr9 4935040 4935322 -112927305 + L2 LINE L2 3046 3306 -7 675 164 9 0 chr9 4935483 4935593 -112927034 + FLAM_A SINE Alu 19 129 -13 28 61 0 0 chr9 4935848 4935897 -112926730 + AT_rich Low_complexity Low_complexity 1 49 0 1203 246 163 12 chr9 4936872 4937271 -112925356 - LTR40c LTR ERVL -1 464 6 1763 201 105 62 chr9 4937554 4938140 -112924487 - MLT1E2 LTR MaLR 0 624 1 962 164 53 0 chr9 4939091 4939243 -112923384 - FRAM SINE Alu -21 155 1 1102 113 6 0 chr9 4939300 4939459 -112923168 - L1PA10 LINE L1 -1 6167 6008 549 201 86 65 chr9 4941373 4941512 -112921115 - FLAM_C SINE Alu -1 142 1 252 272 160 0 chr9 4941910 4942035 -112920592 + MIR SINE MIR 3 147 -115 235 259 151 0 chr9 4942619 4942758 -112919869 + MIR SINE MIR 89 256 -6 385 250 136 15 chr9 4942874 4943006 -112919621 - MLT1K LTR MaLR -20 568 421 277 100 0 0 chr9 4943006 4943046 -112919581 + FRAM/FAM SINE Alu 43 82 -93 188 229 29 57 chr9 4943176 4943246 -112919381 + MIR SINE MIR 78 145 -63 22 35 0 0 chr9 4943304 4943333 -112919294 + AT_rich Low_complexity Low_complexity 1 29 0 603 316 30 6 chr9 4943377 4943545 -112919082 - MLT1K LTR MaLR -415 173 2 243 88 0 0 chr9 4943954 4943988 -112918639 + (T)n Simple_repeat Simple_repeat 1 34 0 2002 100 0 8 chr9 4944120 4944379 -112918248 - AluSq SINE Alu -48 265 9 2110 107 17 3 chr9 4944586 4944875 -112917752 - AluSg SINE Alu -17 293 1 221 245 0 0 chr9 4944893 4944942 -112917685 + (TATATG)n Simple_repeat Simple_repeat 6 54 0 2089 127 10 7 chr9 4945009 4945300 -112917327 + AluSq SINE Alu 1 292 -21 299 253 137 11 chr9 4945644 4945739 -112916888 - MER103 DNA DNA -59 107 1 1864 152 13 23 chr9 4945875 4946184 -112916443 - AluJo SINE Alu -6 306 1 1820 176 0 0 chr9 4947387 4947682 -112914945 - AluJo SINE Alu -17 295 1 730 20 41 0 chr9 4947702 4947800 -112914827 + (CTATT)n Simple_repeat Simple_repeat 3 104 0 764 292 65 27 chr9 4948615 4949133 -112913494 - MLT1K LTR MaLR -8 580 13 217 248 186 18 chr9 4949305 4949418 -112913209 - MIR3 SINE MIR -49 159 28 1885 211 25 3 chr9 4949583 4949939 -112912688 + MLT1A1 LTR MaLR 1 364 -1 1034 210 0 40 chr9 4950363 4950587 -112912040 - AluJo SINE Alu -13 299 85 271 62 0 0 chr9 4950587 4950619 -112912008 - AluSg/x SINE Alu -52 250 219 979 112 0 42 chr9 4950619 4950762 -112911865 - AluJo SINE Alu -170 142 6 329 274 133 0 chr9 4951002 4951137 -112911490 + MARNA DNA Mariner 235 387 -199 2209 129 3 0 chr9 4951215 4951526 -112911101 + AluSx SINE Alu 1 312 0 246 132 0 0 chr9 4951541 4951594 -112911033 + (TAAAA)n Simple_repeat Simple_repeat 4 56 0 26 0 0 0 chr9 4953489 4953515 -112909112 + AT_rich Low_complexity Low_complexity 1 26 0 1728 199 3 0 chr9 4953596 4953883 -112908744 - AluJb SINE Alu -24 288 1 495 274 169 10 chr9 4954145 4954346 -112908281 + L1ME LINE L1 5582 5814 -307 196 289 111 11 chr9 4954490 4954580 -112908047 + L2 LINE L2 3141 3239 -33 2106 184 37 31 chr9 4956258 4956714 -112905913 - MLT1C LTR MaLR -6 461 3 234 250 0 0 chr9 4956911 4956959 -112905668 - MLT1K LTR MaLR -17 571 524 2261 109 0 22 chr9 4956977 4957297 -112905330 + AluSq SINE Alu 1 313 0 248 152 0 22 chr9 4957332 4957378 -112905249 - HSMAR1 DNA Mariner -1242 45 1 265 107 18 36 chr9 4957461 4957517 -112905110 + (TCCC)n Simple_repeat Simple_repeat 4 58 0 859 257 61 39 chr9 4957544 4957824 -112904803 - MLT1K LTR MaLR -165 423 138 254 292 43 75 chr9 4958380 4958541 -112904086 - MIR3 SINE MIR -36 172 17 291 140 0 0 chr9 4958618 4958668 -112903959 + (CA)n Simple_repeat Simple_repeat 2 51 0 288 309 78 123 chr9 4958692 4959051 -112903576 + L2 LINE L2 2917 3259 -13 289 243 97 29 chr9 4959246 4959349 -112903278 - MIR SINE MIR -1 261 152 1753 160 21 63 chr9 4959859 4960240 -112902387 - MLT1A1 LTR MaLR 0 365 1 409 260 57 24 chr9 4960605 4960728 -112901899 - L2 LINE L2 -5 3308 3182 2256 105 0 0 chr9 4960750 4961044 -112901583 - AluSq SINE Alu -14 299 6 270 250 18 71 chr9 4961266 4961378 -112901249 - LTR67 LTR ERVL -367 190 32 1951 121 34 14 chr9 4961416 4961713 -112900914 + AluJb SINE Alu 1 303 -9 1175 213 63 72 chr9 4961776 4962124 -112900503 - L1ME2 LINE L1 -1 6163 5819 1175 127 0 0 chr9 4962124 4962289 -112900338 + AluSg/x SINE Alu 134 298 -14 478 207 78 17 chr9 4962289 4962405 -112900222 - L1ME2 LINE L1 -344 5822 5700 220 221 103 29 chr9 4962407 4962475 -112900152 - MER5A DNA MER1_type -116 73 1 5116 63 38 0 chr9 4962710 4963345 -112899282 + PABL_A LTR ERV1 1 659 -1 414 280 95 11 chr9 4963422 4963640 -112898987 - MLT1H LTR MaLR -215 334 62 272 279 52 10 chr9 4964362 4964528 -112898099 + LTR16C LTR ERVL 2 222 -269 2148 121 0 7 chr9 4965000 4965297 -112897330 + AluSx SINE Alu 1 295 -17 265 204 174 51 chr9 4966264 4966362 -112896265 - MIR SINE MIR -78 130 21 1377 170 88 28 chr9 4966542 4966825 -112895802 + AluJb SINE Alu 1 300 -12 490 243 18 0 chr9 4966854 4966965 -112895662 - MER103 DNA DNA -46 120 8 251 111 0 22 chr9 4966973 4967018 -112895609 + (TCCC)n Simple_repeat Simple_repeat 2 45 0 748 211 34 96 chr9 4967430 4967838 -112894789 + L1ME LINE L1 552 934 -5136 842 206 0 0 chr9 4967843 4967989 -112894638 + FRAM SINE Alu 1 146 -30 257 0 30 0 chr9 4967994 4968027 -112894600 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 1156 257 63 41 chr9 4968029 4968877 -112893750 + L1MB2 LINE L1 1016 5881 -224 * 1682 192 13 37 chr9 4968715 4969096 -112893531 + L1ME2 LINE L1 5717 6088 -10 308 265 65 37 chr9 4969129 4969344 -112893283 + L1MC4 LINE L1 7821 8041 -1 587 317 96 30 chr9 4969352 4970020 -112892607 + L2 LINE L2 2334 3046 -226 279 221 44 15 chr9 4970074 4970142 -112892485 + L2 LINE L2 3231 3300 -13 747 238 165 79 chr9 4970248 4970780 -112891847 - MLT1L LTR MaLR -8 580 4 22 0 0 0 chr9 4971012 4971034 -112891593 + AT_rich Low_complexity Low_complexity 1 22 0 295 264 0 11 chr9 4971077 4971164 -112891463 + L1MDb LINE L1 892 977 -5432 33150 100 12 59 chr9 4971866 4978320 -112884307 - L1PA7 LINE L1 -1 6153 12 27 87 0 0 chr9 4978330 4978399 -112884228 + AT_rich Low_complexity Low_complexity 1 69 0 2120 113 0 10 chr9 4978727 4979019 -112883608 - AluSx SINE Alu -6 306 18 269 323 91 5 chr9 4979141 4979327 -112883300 + L1M4 LINE L1 4935 5136 -1010 699 290 45 0 chr9 4979331 4979552 -112883075 - MIR SINE MIR 0 262 32 1992 158 0 0 chr9 4979838 4980136 -112882491 - AluJo SINE Alu -14 298 1 22 35 0 0 chr9 4981820 4981849 -112880778 + AT_rich Low_complexity Low_complexity 1 29 0 428 182 65 71 chr9 4981852 4982006 -112880621 - L1ME4a LINE L1 -4 6117 5965 1563 147 50 114 chr9 4982094 4982258 -112880369 + MLT1B LTR MaLR 1 174 -216 2170 130 0 0 chr9 4982258 4982559 -112880068 + AluSx SINE Alu 12 312 0 1563 147 50 114 chr9 4982559 4982796 -112879831 + MLT1B LTR MaLR 174 376 -14 999 289 46 28 chr9 4982902 4983364 -112879263 - L1ME4a LINE L1 -188 5933 5468 2255 78 10 10 chr9 4984244 4984537 -112878090 + AluSq SINE Alu 1 293 -20 291 123 70 26 chr9 4984537 4984651 -112877976 + (TA)n Simple_repeat Simple_repeat 1 119 0 1937 103 31 78 chr9 4984814 4985006 -112877621 - AluSx SINE Alu -8 304 131 2179 60 43 0 chr9 4985006 4985315 -112877312 - AluY SINE Alu 0 311 1 1937 103 31 78 chr9 4985315 4985441 -112877186 - AluSx SINE Alu -181 131 1 409 274 51 0 chr9 4985636 4985753 -112876874 - MIR SINE MIR -27 235 113 1868 121 10 38 chr9 4986737 4987052 -112875575 - AluSx SINE Alu 0 307 1 711 286 122 61 chr9 4987072 4987451 -112875176 - L1 LINE L1 -1792 4354 4000 2245 109 0 0 chr9 4987451 4987745 -112874882 + AluSx SINE Alu 1 294 -18 711 286 122 61 chr9 4987745 4988253 -112874374 - L1 LINE L1 -2146 4000 3408 430 311 34 48 chr9 4988393 4988739 -112873888 + MLT1K LTR MaLR 225 586 -2 2214 100 3 3 chr9 4989106 4989405 -112873222 - AluSx SINE Alu -13 299 1 332 296 32 38 chr9 4989463 4989649 -112872978 - L1 LINE L1 -3093 3053 2869 685 154 52 0 chr9 4989688 4989824 -112872803 - L1MC3 LINE L1 -1 7784 7642 1104 153 62 0 chr9 4989840 4990016 -112872611 - L1MC3 LINE L1 -427 7358 7172 1604 188 19 16 chr9 4990019 4990328 -112872299 - AluJo SINE Alu -2 310 1 354 231 9 37 chr9 4990328 4990436 -112872191 - MLT1F1 LTR MaLR -443 124 20 1389 194 70 39 chr9 4990436 4990792 -112871835 - L1MC3 LINE L1 -709 7076 6710 21 36 0 0 chr9 4990829 4990857 -112871770 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr9 4990876 4990908 -112871719 + AT_rich Low_complexity Low_complexity 1 32 0 44263 41 6 0 chr9 4990908 4997025 -112865602 - L1PA4 LINE L1 -3 6152 2 2103 117 7 7 chr9 4997027 4997325 -112865302 - AluSq SINE Alu -15 298 1 351 246 184 0 chr9 4997336 4997450 -112865177 - MLT1H LTR MaLR -65 484 350 2946 119 113 61 chr9 4997715 4998209 -112864418 - MLT2B1 LTR ERVL 0 520 1 255 313 10 20 chr9 4998993 4999092 -112863535 - MLT1-int LTR MaLR -1269 102 5 964 175 0 75 chr9 5000431 5000631 -112861996 + MER20 DNA MER1_type 1 185 -34 852 152 0 0 chr9 5000713 5000845 -112861782 + FRAM SINE Alu 33 164 -12 791 200 23 46 chr9 5000878 5001053 -112861574 - MER5B DNA MER1_type -1 177 7 297 178 208 20 chr9 5001059 5001160 -112861467 - MIR3 SINE MIR -48 160 41 26 82 0 0 chr9 5001262 5001323 -112861304 + AT_rich Low_complexity Low_complexity 1 61 0 3215 199 27 37 chr9 5001345 5002098 -112860529 + L1ME1 LINE L1 5408 6152 -14 231 295 147 0 chr9 5002105 5002234 -112860393 - HAL1b LINE L1 -6 1342 1195 1089 279 58 49 chr9 5002240 5002809 -112859818 - HAL1b LINE L1 -692 656 83 1358 188 19 16 chr9 5003691 5003947 -112858680 - MER58B DNA MER1_type -5 336 80 592 222 0 0 chr9 5003950 5004049 -112858578 + FLAM_A SINE Alu 1 99 -43 371 277 0 0 chr9 5004064 5004147 -112858480 - MER58B DNA MER1_type -258 83 1 1554 204 59 4 chr9 5004390 5004567 -112858060 - AluJo SINE Alu 0 308 108 189 0 0 0 chr9 5004567 5004588 -112858039 + (TTG)n Simple_repeat Simple_repeat 1 21 0 1554 204 59 4 chr9 5004588 5004703 -112857924 - AluJo SINE Alu -200 108 1 271 258 152 3 chr9 5004875 5004967 -112857660 + MER2 DNA MER2_type 2 104 -135 1362 130 0 5 chr9 5005047 5005239 -112857388 + AluSx SINE Alu 7 197 -115 563 216 203 0 chr9 5006625 5006773 -112855854 + MER5A DNA MER1_type 9 186 -3 696 232 19 19 chr9 5006790 5006847 -112855780 - MER5B DNA MER1_type -5 173 117 2274 116 0 3 chr9 5006847 5007149 -112855478 + AluSg SINE Alu 1 301 -9 696 232 19 19 chr9 5007149 5007246 -112855381 - MER5B DNA MER1_type -60 118 19 2505 77 0 0 chr9 5007427 5007725 -112854902 - AluY SINE Alu -13 298 1 3606 184 11 17 chr9 5007741 5008403 -112854224 - L1MB4 LINE L1 -6 6174 5517 1674 192 0 3 chr9 5009396 5009693 -112852934 - AluJb SINE Alu -16 296 1 1642 169 17 40 chr9 5009698 5010000 -112852627 - AluJo SINE Alu -17 295 1 704 137 56 96 chr9 5010210 5010326 -112852301 - MER53 DNA DNA 0 189 83 2186 117 0 3 chr9 5010326 5010625 -112852002 + AluY SINE Alu 2 299 -12 704 137 56 96 chr9 5010625 5010705 -112851922 - MER53 DNA DNA -106 83 1 348 286 271 18 chr9 5010940 5011331 -112851296 - LTR33 LTR ERVL -27 494 5 482 284 45 13 chr9 5011333 5011488 -112851139 - MIR SINE MIR -19 243 84 23 0 0 0 chr9 5011551 5011574 -112851053 + AT_rich Low_complexity Low_complexity 1 23 0 311 218 46 35 chr9 5011901 5011988 -112850639 - L3 LINE CR1 -7 1570 1483 43 35 0 0 chr9 5012628 5012685 -112849942 + AT_rich Low_complexity Low_complexity 1 57 0 530 211 37 9 chr9 5013367 5013476 -112849151 - MER81 DNA DNA 0 114 3 198 103 0 0 chr9 5013793 5013822 -112848805 + (CA)n Simple_repeat Simple_repeat 2 30 0 291 314 84 35 chr9 5014185 5014403 -112848224 + L1M4 LINE L1 2880 3117 -3029 303 28 0 0 chr9 5014403 5014439 -112848188 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 291 314 84 35 chr9 5014439 5014507 -112848120 + L1M4 LINE L1 3117 3180 -2966 187 284 84 63 chr9 5014739 5014834 -112847793 - MIR SINE MIR -59 149 53 268 284 159 35 chr9 5015311 5015543 -112847084 - L3 LINE CR1 -19 1558 1298 742 223 0 0 chr9 5016144 5016265 -112846362 - FLAM_A SINE Alu -12 121 1 689 247 45 40 chr9 5016265 5016512 -112846115 + L1ME4a LINE L1 5588 5835 -286 347 215 50 91 chr9 5017091 5017212 -112845415 - MLT1H LTR MaLR 0 549 434 888 137 0 0 chr9 5017335 5017466 -112845161 + AluSg/x SINE Alu 176 306 -4 1913 140 0 47 chr9 5017929 5018250 -112844377 - AluSx SINE Alu -6 306 1 214 340 0 10 chr9 5020737 5020840 -112841787 + (CCA)n Simple_repeat Simple_repeat 1 102 0 2398 68 3 0 chr9 5021231 5021526 -112841101 - AluY SINE Alu 0 311 16 306 0 0 0 chr9 5021845 5021879 -112840748 + (TTTTG)n Simple_repeat Simple_repeat 1 34 0 1877 153 0 33 chr9 5021974 5022281 -112840346 - AluSx SINE Alu -15 297 1 1601 182 20 10 chr9 5022516 5022818 -112839809 - AluJb SINE Alu -7 305 1 586 240 6 55 chr9 5022821 5023004 -112839623 - L1ME2 LINE L1 -36 6128 5955 588 240 94 36 chr9 5023018 5023222 -112839405 - L1ME2 LINE L1 -633 5537 5289 851 206 12 0 chr9 5023222 5023382 -112839245 - FRAM SINE Alu -1 165 4 588 240 94 36 chr9 5023382 5023491 -112839136 - L1ME2 LINE L1 -881 5289 5188 442 154 22 33 chr9 5023497 5023588 -112839039 - Charlie1a DNA MER1_type -633 822 733 44785 39 3 0 chr9 5023594 5029726 -112832901 - L1PA4 LINE L1 -6 6149 8 509 194 31 0 chr9 5029733 5029831 -112832796 - Charlie1a DNA MER1_type -710 745 645 827 236 6 0 chr9 5029843 5030000 -112832627 + AluJb SINE Alu 148 305 -7 1460 189 61 10 chr9 5030019 5030331 -112832296 - Charlie1a DNA MER1_type -803 652 325 5564 153 19 38 chr9 5030332 5031071 -112831556 + L1MC2 LINE L1 5308 6023 -321 2355 78 0 10 chr9 5031071 5031377 -112831250 - AluY SINE Alu -8 303 1 5564 153 19 38 chr9 5031377 5031682 -112830945 + L1MC2 LINE L1 6023 6332 -12 1180 181 7 90 chr9 5031682 5031970 -112830657 - Charlie1a DNA MER1_type -1110 345 82 642 250 69 50 chr9 5031992 5032352 -112830275 - L1MDb LINE L1 -4831 1575 1209 2319 91 10 0 chr9 5032371 5032667 -112829960 + AluSx SINE Alu 1 299 -13 2931 9 0 0 chr9 5032685 5033001 -112829626 + AluYb8 SINE Alu 1 316 -2 888 145 52 6 chr9 5033146 5033318 -112829309 - L1MA7 LINE L1 -6 6285 6106 441 245 44 33 chr9 5033336 5033593 -112829034 - L1MDb LINE L1 -5179 1217 938 * 5208 179 27 28 chr9 5033583 5034537 -112828090 + L1 LINE L1 818 1770 -5398 1798 158 22 0 chr9 5034530 5034890 -112827737 + L1 LINE L1 5284 5651 -1516 * 680 122 65 0 chr9 5034895 5035018 -112827609 - L1MA4 LINE L1 -17 6283 6153 1327 275 43 37 chr9 5035024 5035515 -112827112 - L1M3b LINE L1 -5777 504 11 871 210 125 23 chr9 5035533 5036001 -112826626 - L1M4c LINE L1 -4137 2509 1914 674 144 0 0 chr9 5036022 5036126 -112826501 + AluSg/x SINE Alu 170 273 -39 789 157 31 6 chr9 5036173 5036332 -112826295 - L1MC/D LINE L1 -756 5577 5415 8869 155 91 86 chr9 5036337 5036405 -112826222 - L1MCa LINE L1 -3948 2478 2412 1877 183 0 16 chr9 5036405 5036722 -112825905 - AluJo SINE Alu 0 312 1 8869 155 91 86 chr9 5036722 5037196 -112825431 - L1MCa LINE L1 -4014 2412 1942 226 185 0 74 chr9 5037196 5037250 -112825377 - Alu SINE Alu -252 50 1 8869 155 91 86 chr9 5037250 5039147 -112823480 - L1MCa LINE L1 -4484 1942 56 3488 217 66 22 chr9 5039168 5040596 -112822031 - L1M4c LINE L1 -4726 1920 448 628 264 58 14 chr9 5040735 5041012 -112821615 - L1ME4a LINE L1 -296 5825 5537 442 306 153 6 chr9 5041116 5041273 -112821354 - MER5A DNA MER1_type -1 188 9 1153 122 0 43 chr9 5042486 5042674 -112819953 - AluSg/x SINE Alu -1 311 132 511 343 23 23 chr9 5043457 5043629 -112818998 + MER5B DNA MER1_type 3 174 -4 701 152 23 38 chr9 5043641 5043773 -112818854 + MER5B DNA MER1_type 1 130 -48 279 262 0 0 chr9 5043810 5043871 -112818756 + MER5B DNA MER1_type 118 178 0 599 207 200 0 chr9 5043944 5044094 -112818533 - MER5A DNA MER1_type 0 189 10 1777 139 89 4 chr9 5044252 5044533 -112818094 - AluSx SINE Alu -7 305 1 345 47 0 0 chr9 5044784 5044827 -112817800 + (TG)n Simple_repeat Simple_repeat 2 44 0 273 238 39 28 chr9 5045190 5045344 -112817283 - HAL1b LINE L1 -12 1336 1233 206 158 26 0 chr9 5045344 5045382 -112817245 + T-rich Low_complexity Low_complexity 2 40 0 2033 135 0 3 chr9 5046193 5046482 -112816145 + AluSx SINE Alu 6 293 -19 1453 250 69 40 chr9 5046702 5047250 -112815377 + L2 LINE L2 847 1410 -1904 686 286 57 74 chr9 5047466 5047638 -112814989 + LTR16B LTR ERVL 118 282 -182 3074 147 17 28 chr9 5047638 5048242 -112814385 - L1MB8 LINE L1 0 6178 5582 686 286 57 74 chr9 5048242 5048422 -112814205 + LTR16B LTR ERVL 282 464 0 2828 234 119 60 chr9 5048426 5049520 -112813107 + L2 LINE L2 1512 2669 -645 273 193 122 92 chr9 5049531 5049769 -112812858 + L1MC5 LINE L1 7639 7883 -78 377 268 151 34 chr9 5049777 5049797 -112812830 + HAL1b LINE L1 444 460 -888 3234 143 38 4 chr9 5049797 5050329 -112812298 + MER44D DNA MER2_type 1 605 0 377 268 151 34 chr9 5050329 5050375 -112812252 + HAL1b LINE L1 460 499 -849 2508 71 0 3 chr9 5050375 5050684 -112811943 + AluY SINE Alu 1 308 -3 377 268 151 34 chr9 5050684 5050907 -112811720 + HAL1b LINE L1 499 768 -580 2031 126 13 10 chr9 5050958 5051259 -112811368 - AluSx SINE Alu -9 303 2 324 288 65 52 chr9 5051293 5051446 -112811181 + MIR SINE MIR 18 172 -90 398 278 254 28 chr9 5051488 5051772 -112810855 - L2 LINE L2 -38 3275 2928 234 167 167 0 chr9 5052107 5052161 -112810466 - MIR SINE MIR -90 172 110 352 275 28 28 chr9 5052426 5052535 -112810092 - L2 LINE L2 0 3313 3205 1156 181 0 0 chr9 5053194 5053382 -112809245 - MER5A DNA MER1_type 0 189 2 555 312 73 12 chr9 5053639 5053886 -112808741 + MIR SINE MIR 1 262 0 397 327 31 6 chr9 5053881 5054040 -112808587 - MIR SINE MIR -26 236 74 * 225 356 27 0 chr9 5054270 5054343 -112808284 + L2 LINE L2 3195 3269 -3 351 295 89 85 chr9 5054398 5055008 -112807619 + L1ME4a LINE L1 5495 6121 0 2061 128 3 3 chr9 5056795 5057114 -112805513 - AluY SINE Alu 0 311 1 192 308 10 92 chr9 5057840 5058035 -112804592 - L3 LINE CR1 -708 869 691 433 260 122 25 chr9 5058067 5058263 -112804364 - MIR SINE MIR -42 220 6 216 320 48 29 chr9 5058264 5058367 -112804260 + MER5B DNA MER1_type 5 109 -69 253 307 122 42 chr9 5058406 5058595 -112804032 - L3 LINE CR1 -931 646 443 1429 245 49 56 chr9 5059709 5060223 -112802404 + L2 LINE L2 2804 3313 0 333 261 59 128 chr9 5060600 5060937 -112801690 + L1M2 LINE L1 662 975 -5874 319 289 99 99 chr9 5060837 5061565 -112801062 - L1M2 LINE L1 -5479 1370 776 * 1292 156 115 0 chr9 5062522 5062828 -112799799 - MER46B DNA MER2_type -8 228 1 248 289 256 39 chr9 5063246 5063331 -112799296 + MIR SINE MIR 9 74 -188 2358 103 0 0 chr9 5063331 5063641 -112798986 + AluSx SINE Alu 1 310 -2 248 289 256 39 chr9 5063641 5063735 -112798892 + MIR SINE MIR 74 227 -35 876 195 118 10 chr9 5064129 5064441 -112798186 + MER119 DNA MER1_type 137 583 0 300 320 80 8 chr9 5066082 5066207 -112796420 - MIR3 SINE MIR -9 199 66 185 328 40 34 chr9 5066224 5066401 -112796226 - L2 LINE L2 -889 2425 2248 538 297 36 5 chr9 5067619 5067811 -112794816 + L2 LINE L2 1471 1668 -1646 1451 207 134 88 chr9 5067822 5068367 -112794260 - MLT1G LTR MaLR -12 578 14 3242 138 71 3 chr9 5069626 5070192 -112792435 + MER6A DNA MER2_type 2 605 0 825 201 37 27 chr9 5070201 5070385 -112792242 - MER5A DNA MER1_type -3 175 1 911 239 4 39 chr9 5070393 5070623 -112792004 - MER58A DNA MER1_type 0 224 3 358 254 91 0 chr9 5070629 5070739 -112791888 + L2 LINE L2 1707 1826 -1488 289 303 175 20 chr9 5070790 5071041 -112791586 - L1MC/D LINE L1 -2105 5703 5414 1667 123 4 0 chr9 5072101 5072368 -112790259 + AluSq SINE Alu 58 325 0 25 31 0 0 chr9 5072390 5072422 -112790205 + AT_rich Low_complexity Low_complexity 1 32 0 21 57 0 0 chr9 5072630 5072665 -112789962 + AT_rich Low_complexity Low_complexity 1 35 0 1771 154 13 16 chr9 5072799 5073110 -112789517 - AluJb SINE Alu -2 310 1 2459 140 29 7 chr9 5073112 5073527 -112789100 - MSTA LTR MaLR -4 424 1 2421 87 0 0 chr9 5074133 5074432 -112788195 - AluSg SINE Alu -11 299 1 217 161 54 0 chr9 5074597 5074653 -112787974 + A-rich Low_complexity Low_complexity 2 60 0 2234 49 32 14 chr9 5074716 5075000 -112787627 - AluY SINE Alu -20 291 3 1213 79 57 6 chr9 5075381 5075558 -112787069 - MLT2A1 LTR ERVL -8 436 251 436 131 0 0 chr9 5075563 5075624 -112787003 - AluS SINE Alu -255 63 3 273 272 44 44 chr9 5075799 5075935 -112786692 - L1M4 LINE L1 -660 5518 5383 780 192 5 101 chr9 5076671 5076890 -112785737 - MER74B LTR ERVL -367 255 58 2738 222 52 15 chr9 5076891 5077707 -112784920 - L1M4 LINE L1 -1805 4341 3496 6739 64 12 5 chr9 5077813 5079066 -112783561 + L1PA7 LINE L1 4893 6154 0 189 345 101 17 chr9 5081799 5081918 -112780709 - L3b LINE CR1 -99 1484 1356 27 29 0 0 chr9 5082044 5082078 -112780549 + AT_rich Low_complexity Low_complexity 1 34 0 316 290 101 5 chr9 5082526 5082743 -112779884 + L1ME4a LINE L1 5645 5882 -239 396 0 0 0 chr9 5085252 5085296 -112777331 + (CA)n Simple_repeat Simple_repeat 1 44 0 225 0 0 0 chr9 5085295 5085320 -112777307 + (GA)n Simple_repeat Simple_repeat 2 26 0 * 1978 116 7 0 chr9 5085989 5086266 -112776361 - AluSq SINE Alu 0 313 35 274 250 107 68 chr9 5086746 5086951 -112775676 + MLT1J LTR MaLR 61 311 -200 703 19 48 0 chr9 5087111 5087216 -112775411 + (TAGA)n Simple_repeat Simple_repeat 2 111 0 21 0 0 0 chr9 5087762 5087783 -112774844 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 5087934 5087956 -112774671 + AT_rich Low_complexity Low_complexity 1 22 0 2370 190 51 0 chr9 5088550 5089039 -112773588 + LTR53 LTR ERVL 6 519 0 195 357 97 32 chr9 5089133 5089441 -112773186 + L2 LINE L2 2634 2961 -353 1992 146 73 2 chr9 5090456 5090880 -112771747 - L1MCa LINE L1 -4112 2314 1861 933 18 0 0 chr9 5091718 5091827 -112770800 - L1PA2 LINE L1 0 6155 6047 487 20 2 0 chr9 5091827 5091900 -112770727 + L1M LINE L1 5279 5352 -812 2939 206 35 21 chr9 5092624 5093429 -112769198 - L1 LINE L1 -3153 2993 2178 786 158 0 29 chr9 5093436 5093607 -112769020 - L1MA7 LINE L1 0 6291 6126 5039 237 98 6 chr9 5093608 5094872 -112767755 + L1M2a LINE L1 -779 600 -5783 4162 222 48 29 chr9 5094866 5096199 -112766428 + L1M2a LINE L1 911 2064 -4320 * 4535 64 25 3 chr9 5096199 5096791 -112765836 - L1PA7 LINE L1 0 6154 5550 4162 222 48 29 chr9 5096791 5097221 -112765406 + L1M2a LINE L1 2064 2484 -3900 896 133 0 0 chr9 5097237 5097357 -112765270 + AluSg/x SINE Alu 174 293 -17 1077 225 44 24 chr9 5097558 5097887 -112764740 + L1MC/D LINE L1 5263 5601 -2207 297 51 0 0 chr9 5097887 5097926 -112764701 + (TG)n Simple_repeat Simple_repeat 2 40 0 869 131 0 8 chr9 5097943 5098065 -112764562 - AluSq/x SINE Alu -192 121 1 2197 121 0 0 chr9 5099880 5100177 -112762450 - AluSx SINE Alu -14 298 2 2020 143 0 7 chr9 5100263 5100563 -112762064 - AluSx SINE Alu -14 298 1 238 304 328 12 chr9 5101223 5101473 -112761154 + L2 LINE L2 2984 3312 -1 268 225 36 0 chr9 5101479 5101590 -112761037 + GA-rich Low_complexity Low_complexity 3 117 0 432 222 116 62 chr9 5102751 5103268 -112759359 + MER34 LTR ERV1 42 542 0 1882 148 3 7 chr9 5103656 5103963 -112758664 + AluSx SINE Alu 1 306 0 33 43 0 0 chr9 5104959 5105006 -112757621 + AT_rich Low_complexity Low_complexity 1 47 0 494 292 149 11 chr9 5106124 5106487 -112756140 - LTR33 LTR ERVL -87 434 22 22 0 0 0 chr9 5106789 5106811 -112755816 + AT_rich Low_complexity Low_complexity 1 22 0 22418 112 13 29 chr9 5106821 5108914 -112753713 + L1P LINE L1 11 2136 -4010 2855 22 0 0 chr9 5108914 5109231 -112753396 + AluYb8 SINE Alu 1 317 -1 22418 112 13 29 chr9 5109231 5110249 -112752378 + L1P LINE L1 2136 3054 -3092 2410 84 0 0 chr9 5110249 5110558 -112752069 + AluY SINE Alu 1 309 -2 22418 112 13 29 chr9 5110558 5111239 -112751388 + L1P LINE L1 3054 3744 -2402 3835 56 14 0 chr9 5111239 5111720 -112750907 + L1PA6 LINE L1 5660 6152 -2 507 329 18 28 chr9 5111735 5112124 -112750503 + L1MC4a LINE L1 5548 5932 -1876 2199 84 24 10 chr9 5112513 5112809 -112749818 - AluSq SINE Alu -13 300 1 6320 136 8 1 chr9 5113169 5114230 -112748397 + L1P LINE L1 3242 4310 -1836 261 0 0 0 chr9 5116882 5116911 -112745716 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 24 0 0 0 chr9 5117228 5117252 -112745375 + AT_rich Low_complexity Low_complexity 1 24 0 283 276 126 14 chr9 5117695 5117909 -112744718 + L1ME4a LINE L1 5645 5882 -239 21 0 0 0 chr9 5120353 5120374 -112742253 + AT_rich Low_complexity Low_complexity 1 21 0 194 146 0 24 chr9 5120416 5120457 -112742170 + (GAAA)n Simple_repeat Simple_repeat 4 43 0 2032 104 0 22 chr9 5121128 5121406 -112741221 - AluSq SINE Alu -7 306 35 4244 220 59 15 chr9 5121746 5122366 -112740261 + L1MA9 LINE L1 2527 3118 -3028 2141 145 3 0 chr9 5122366 5122677 -112739950 - AluSx SINE Alu 0 312 1 4244 220 59 15 chr9 5122677 5123354 -112739273 + L1MA9 LINE L1 3118 3881 -2265 2842 99 9 5 chr9 5123362 5123784 -112738843 + L1PB1 LINE L1 5728 6151 0 1711 134 39 36 chr9 5123823 5124159 -112738468 + L1MC3 LINE L1 7441 7777 -8 504 295 5 37 chr9 5124246 5124436 -112738191 + MIR SINE MIR 78 261 -1 4392 181 22 22 chr9 5124517 5125516 -112737111 + L1MA6 LINE L1 5299 6297 -3 6281 192 17 40 chr9 5125521 5127000 -112735627 + L1MA9 LINE L1 3928 5439 -873 2744 20 0 0 chr9 5127000 5127305 -112735322 + AluY SINE Alu 1 305 -6 6281 192 17 40 chr9 5127305 5127705 -112734922 + L1MA9 LINE L1 5439 5757 -555 195 42 0 0 chr9 5127705 5127729 -112734898 + (TG)n Simple_repeat Simple_repeat 1 24 0 6281 192 17 40 chr9 5127729 5128192 -112734435 + L1MA9 LINE L1 5757 6229 -83 351 164 0 0 chr9 5128217 5128272 -112734355 - MER2 DNA MER2_type -10 335 281 * 638 278 11 6 chr9 5128246 5128422 -112734205 - MER8 DNA MER2_type -60 179 3 692 244 121 22 chr9 5128574 5128939 -112733688 - L1M1 LINE L1 -4200 3365 2965 1058 181 0 0 chr9 5128939 5129110 -112733517 + AluSg/x SINE Alu 132 302 -8 2305 269 57 12 chr9 5129110 5129484 -112733143 - L1M2 LINE L1 -4271 2897 2541 2315 90 3 0 chr9 5129484 5129785 -112732842 - AluY SINE Alu -9 302 1 2305 269 57 12 chr9 5129785 5130619 -112732008 - L1M2 LINE L1 -4627 2541 1623 306 106 0 0 chr9 5131427 5131474 -112731153 + (TG)n Simple_repeat Simple_repeat 2 48 0 231 250 25 50 chr9 5131726 5131846 -112730781 - L1MC5 LINE L1 -44 7917 7801 426 184 117 81 chr9 5131887 5132110 -112730517 - L1ME2 LINE L1 -24 6140 5910 21 0 0 0 chr9 5134691 5134712 -112727915 + AT_rich Low_complexity Low_complexity 1 21 0 316 316 105 0 chr9 5134794 5134927 -112727700 + MIR3 SINE MIR 52 198 -10 27 0 0 0 chr9 5135636 5135663 -112726964 + AT_rich Low_complexity Low_complexity 1 27 0 250 313 70 62 chr9 5136504 5136781 -112725846 + L2 LINE L2 2755 3028 -244 695 255 39 77 chr9 5136927 5137237 -112725390 + L2 LINE L2 3010 3307 -6 459 278 125 37 chr9 5137517 5137733 -112724894 + MIR SINE MIR 23 257 -5 22 0 0 0 chr9 5137974 5137996 -112724631 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr9 5138013 5138045 -112724582 + AT_rich Low_complexity Low_complexity 1 32 0 1900 131 48 3 chr9 5138952 5139242 -112723385 - AluSx SINE Alu -9 303 1 1799 203 71 30 chr9 5139697 5140204 -112722423 + MER63C DNA MER1_type 1 528 -402 779 214 99 5 chr9 5140205 5140406 -112722221 - MER58A DNA MER1_type -4 220 1 1270 211 53 65 chr9 5140406 5140824 -112721803 + MER63C DNA MER1_type 518 930 0 201 225 87 55 chr9 5141284 5141382 -112721245 + MIR SINE MIR 85 187 -55 492 213 21 112 chr9 5143974 5144162 -112718465 + MER5B DNA MER1_type 4 174 -4 4056 200 48 46 chr9 5144267 5145353 -112717274 + L1MC3 LINE L1 6018 7105 -680 316 247 12 0 chr9 5145355 5145440 -112717187 + MLT1F1 LTR MaLR 39 124 -443 897 234 62 4 chr9 5145459 5145733 -112716894 + L1MC3 LINE L1 7495 7784 -1 1806 183 13 38 chr9 5146450 5146899 -112715728 + L1 LINE L1 3952 4389 -1757 417 81 0 0 chr9 5146899 5146961 -112715666 + (CA)n Simple_repeat Simple_repeat 2 63 0 5842 109 28 2 chr9 5146975 5148632 -112713995 + L1PA16 LINE L1 4480 6165 -1 6657 47 37 6 chr9 5148636 5150008 -112712619 + L1PA7 LINE L1 4778 6177 0 2536 100 17 0 chr9 5151197 5151546 -112711081 + THE1A LTR MaLR 1 355 0 2003 90 4 4 chr9 5151879 5152135 -112710492 - AluSc SINE Alu -17 292 37 225 337 49 18 chr9 5152296 5152459 -112710168 - LTR67 LTR ERVL -19 538 371 451 219 50 17 chr9 5152767 5152886 -112709741 - MIR SINE MIR -111 151 29 189 331 44 37 chr9 5153071 5153207 -112709420 + L2 LINE L2 1772 1908 -1406 1433 196 79 0 chr9 5153410 5153690 -112708937 + AluJb SINE Alu 1 302 0 297 338 89 14 chr9 5153843 5154056 -112708571 + L2 LINE L2 2088 2316 -998 276 369 130 27 chr9 5154101 5154432 -112708195 + L2 LINE L2 2549 2913 -401 270 309 128 21 chr9 5154446 5154540 -112708087 + MIR SINE MIR 20 123 -139 3375 144 20 8 chr9 5155577 5156181 -112706446 + L1MB3 LINE L1 5478 6088 -95 644 250 60 6 chr9 5156193 5156369 -112706258 + MIR SINE MIR 7 185 -27 296 236 27 73 chr9 5156369 5156479 -112706148 + L1MC4a LINE L1 5530 5634 -2174 183 42 0 0 chr9 5156529 5156553 -112706074 + (CAT)n Simple_repeat Simple_repeat 2 25 0 317 217 60 0 chr9 5156566 5156649 -112705978 + L1MC4a LINE L1 5835 5922 -1886 192 77 0 0 chr9 5156657 5156683 -112705944 + (CATA)n Simple_repeat Simple_repeat 3 28 0 25 31 0 0 chr9 5156865 5156897 -112705730 + AT_rich Low_complexity Low_complexity 1 32 0 398 295 10 82 chr9 5157951 5158158 -112704469 + HAL1 LINE L1 762 953 -1554 572 228 66 12 chr9 5158310 5158477 -112704150 + L1ME3A LINE L1 5836 6011 -159 317 324 86 31 chr9 5158534 5158930 -112703697 + L1ME LINE L1 2397 2824 -3322 604 163 108 0 chr9 5159264 5159393 -112703234 - MER3 DNA MER1_type -1 208 66 513 323 86 14 chr9 5159520 5159950 -112702677 + L1ME LINE L1 5338 5798 -323 2393 76 0 16 chr9 5159975 5160291 -112702336 + AluY SINE Alu 1 311 0 268 271 29 71 chr9 5160291 5160431 -112702196 - MIR SINE MIR -2 260 127 * 809 253 53 32 chr9 5160407 5160692 -112701935 + L2 LINE L2 3021 3311 -2 1818 129 97 23 chr9 5160701 5161050 -112701577 + THE1C LTR MaLR 1 375 0 2337 121 3 16 chr9 5161071 5161451 -112701176 + THE1-int LTR MaLR 549 923 -657 235 174 0 0 chr9 5161502 5161548 -112701079 - MSTA LTR MaLR 0 428 383 619 305 103 47 chr9 5162246 5162811 -112699816 - L2 LINE L2 -217 3055 2454 1127 233 99 35 chr9 5162817 5163251 -112699376 + MLT1C LTR MaLR 6 467 0 3366 104 87 0 chr9 5163281 5163763 -112698864 - MER1A DNA MER1_type 0 527 4 251 318 73 0 chr9 5163784 5163894 -112698733 - L2 LINE L2 -896 2418 2301 205 316 131 53 chr9 5163957 5164201 -112698426 - L2 LINE L2 -1018 2296 2034 25 0 0 0 chr9 5164780 5164805 -112697822 + AT_rich Low_complexity Low_complexity 1 25 0 438 296 10 36 chr9 5164862 5165058 -112697569 - L2 LINE L2 -410 2904 2714 815 88 0 0 chr9 5165239 5165341 -112697286 - AluY SINE Alu -162 149 48 1480 257 41 33 chr9 5165631 5166144 -112696483 + LTR40a LTR ERVL 3 519 0 1072 165 46 46 chr9 5166234 5166452 -112696175 + MER20 DNA MER1_type 2 219 0 416 325 8 0 chr9 5166789 5166906 -112695721 - L2 LINE L2 -380 2934 2817 287 329 206 0 chr9 5166923 5167069 -112695558 - MER5A DNA MER1_type 0 189 14 542 250 68 0 chr9 5167081 5167213 -112695414 - L2 LINE L2 -505 2809 2669 1398 246 55 14 chr9 5167245 5167684 -112694943 + L1ME3 LINE L1 5698 6154 -8 750 254 17 0 chr9 5167705 5167882 -112694745 - L2 LINE L2 -647 2667 2488 1139 251 52 25 chr9 5167892 5168254 -112694373 - L2 LINE L2 -1010 2304 1933 182 265 20 0 chr9 5168277 5168326 -112694301 + MIR SINE MIR 202 251 -11 792 229 6 0 chr9 5168650 5168807 -112693820 + MIR SINE MIR 102 259 -3 2038 215 45 6 chr9 5168826 5169361 -112693266 - MER90 LTR ERV1 0 575 20 180 296 28 42 chr9 5169546 5169617 -112693010 + L3 LINE CR1 276 345 -1232 321 118 0 0 chr9 5170084 5170135 -112692492 + (TG)n Simple_repeat Simple_repeat 2 52 0 184 239 65 0 chr9 5170601 5170647 -112691980 + MIR SINE MIR 158 206 -56 184 224 0 61 chr9 5171185 5171234 -112691393 - L2 LINE L2 -2886 428 383 750 291 45 5 chr9 5172440 5172663 -112689964 + MIR SINE MIR 30 261 -1 2389 102 0 0 chr9 5172729 5173034 -112689593 - AluSx SINE Alu -7 305 1 2328 94 0 0 chr9 5174299 5174598 -112688029 - AluSx SINE Alu -6 306 8 2304 112 0 0 chr9 5175781 5176085 -112686542 - AluSx SINE Alu -7 305 2 2193 117 0 29 chr9 5176171 5176487 -112686140 - AluSx SINE Alu -5 307 1 299 261 318 15 chr9 5177152 5177416 -112685211 + L2 LINE L2 2969 3312 -1 329 266 0 8 chr9 5177418 5177546 -112685081 + GA-rich Low_complexity Low_complexity 3 129 0 454 249 98 61 chr9 5178696 5179216 -112683411 + LTR48 LTR ERV1 1 787 0 1987 120 3 7 chr9 5179599 5179915 -112682712 + AluSx SINE Alu 1 315 0 189 361 76 25 chr9 5180533 5180652 -112681975 + L2 LINE L2 3188 3312 -1 26 64 0 0 chr9 5180911 5180958 -112681669 + AT_rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chr9 5181695 5181716 -112680911 + AT_rich Low_complexity Low_complexity 1 21 0 671 280 123 23 chr9 5182115 5182544 -112680083 - LTR33 LTR ERVL -28 493 22 2536 71 0 3 chr9 5183107 5183417 -112679210 - AluSq SINE Alu -4 309 1 13377 124 10 1 chr9 5183774 5186660 -112675967 + L1PA10 LINE L1 3242 6158 -10 1880 83 33 14 chr9 5186394 5186660 -112675967 + L1PA10 LINE L1 5885 6158 -10 836 104 24 0 chr9 5186660 5186778 -112675849 + L1PB3 LINE L1 6020 6147 -7 25 0 0 0 chr9 5186778 5186803 -112675824 + AT_rich Low_complexity Low_complexity 1 25 0 224 281 90 0 chr9 5187359 5187448 -112675179 + L2 LINE L2 3217 3313 0 180 77 0 0 chr9 5187771 5187797 -112674830 + (TG)n Simple_repeat Simple_repeat 1 26 0 5348 191 36 8 chr9 5188038 5189046 -112673581 + MST-int LTR MaLR 51 1086 -565 3114 75 18 5 chr9 5189046 5189444 -112673183 + MLT2A1 LTR ERVL 1 403 -41 1904 158 22 33 chr9 5189444 5189804 -112672823 + THE1-int LTR MaLR 1065 1420 -160 28 61 0 0 chr9 5189929 5189978 -112672649 + AT_rich Low_complexity Low_complexity 1 49 0 1277 126 177 52 chr9 5190150 5190421 -112672206 + AluSg1 SINE Alu 5 309 0 242 174 22 0 chr9 5190476 5190522 -112672105 - MER65C LTR ERV1 -312 149 103 2298 121 0 3 chr9 5190994 5191307 -112671320 + AluSx SINE Alu 1 312 0 487 279 16 8 chr9 5191357 5191486 -112671141 - MIR SINE MIR -108 154 25 7959 253 74 40 chr9 5191698 5192240 -112670387 + L1MC4a LINE L1 4475 4997 -2811 1277 199 224 9 chr9 5192240 5192566 -112670061 + MSTD LTR MaLR 1 396 0 7959 253 74 40 chr9 5192566 5193203 -112669424 + L1MC4a LINE L1 4997 5611 -2197 2495 181 66 25 chr9 5193203 5193688 -112668939 + MLT1D LTR MaLR 1 505 0 7959 253 74 40 chr9 5193688 5194063 -112668564 + L1MC4a LINE L1 5611 5972 -1836 2137 117 0 3 chr9 5194063 5194353 -112668274 - AluSx SINE Alu -16 296 8 7959 253 74 40 chr9 5194353 5196021 -112666606 + L1MC4a LINE L1 5972 7807 -1 1459 207 43 6 chr9 5197203 5197551 -112665076 + L1MB5 LINE L1 4922 5282 -864 4161 177 7 45 chr9 5199441 5200304 -112662323 + L1MB5 LINE L1 5328 6157 -17 1395 265 84 25 chr9 5200917 5201484 -112661143 + L2 LINE L2 2712 3313 0 382 278 17 57 chr9 5201512 5201688 -112660939 - MIR SINE MIR -2 260 92 899 220 76 73 chr9 5201691 5202088 -112660539 + L1MC5 LINE L1 6827 7228 -733 784 294 54 21 chr9 5202130 5202537 -112660090 + L1MC5 LINE L1 7260 7630 -178 296 317 128 4 chr9 5202798 5203019 -112659608 - HAL1b LINE L1 -701 1651 400 324 284 92 37 chr9 5203109 5203218 -112659409 + L2 LINE L2 3158 3272 0 268 150 0 50 chr9 5203459 5203519 -112659108 + L2 LINE L2 1951 2007 -1307 1040 193 0 6 chr9 5203582 5203763 -112658864 - AluJb SINE Alu 0 312 133 390 143 89 18 chr9 5203764 5203932 -112658695 + (TA)n Simple_repeat Simple_repeat 1 180 0 343 80 94 25 chr9 5203961 5204188 -112658439 + (TA)n Simple_repeat Simple_repeat 1 242 0 335 144 56 25 chr9 5204223 5204383 -112658244 + (TATAA)n Simple_repeat Simple_repeat 5 169 0 31 68 0 0 chr9 5204383 5204442 -112658185 + AT_rich Low_complexity Low_complexity 1 59 0 321 86 36 64 chr9 5204444 5204584 -112658043 + (TTATA)n Simple_repeat Simple_repeat 5 140 0 279 93 0 0 chr9 5204598 5204641 -112657986 + (GA)n Simple_repeat Simple_repeat 1 43 0 506 171 207 18 chr9 5204663 5204774 -112657853 - AluJb SINE Alu -92 220 89 267 238 89 89 chr9 5205533 5205634 -112656993 + MER5B DNA MER1_type 74 174 -4 1336 194 184 45 chr9 5206525 5206898 -112655729 + LTR40c LTR ERVL 1 435 -30 2912 203 88 33 chr9 5206898 5207593 -112655034 + MER44D DNA MER2_type 1 605 0 1336 194 184 45 chr9 5207593 5207622 -112655005 + LTR40c LTR ERVL 435 459 -6 299 302 17 64 chr9 5207656 5207828 -112654799 + HERVL40 LTR ERVL 20 183 -5347 903 218 68 33 chr9 5207938 5208291 -112654336 + HERVL40 LTR ERVL 918 1353 -4177 1700 184 0 13 chr9 5208579 5208888 -112653739 - AluJo SINE Alu -1 311 7 292 247 82 112 chr9 5208916 5209086 -112653541 + HERVL40 LTR ERVL 1380 1544 -3986 1936 162 141 62 chr9 5209262 5209695 -112652932 - MLT1C LTR MaLR 0 467 1 525 227 61 45 chr9 5209695 5209827 -112652800 + HERVL40 LTR ERVL 2682 2815 -2715 1137 239 81 25 chr9 5209873 5210158 -112652469 + LTR40a LTR ERVL 218 518 -1 635 196 240 11 chr9 5210440 5210619 -112652008 - MIR SINE MIR -38 224 5 1468 171 132 48 chr9 5210856 5211150 -112651477 - MLT1D LTR MaLR -2 503 172 2095 121 27 0 chr9 5211150 5211447 -112651180 + AluSx SINE Alu 1 305 -7 1468 171 132 48 chr9 5211447 5211509 -112651118 - MLT1D LTR MaLR -333 172 117 394 278 79 0 chr9 5212008 5212134 -112650493 + MIR3 SINE MIR 50 185 -23 6025 116 47 21 chr9 5212377 5215231 -112647396 + SVA Other Other 19 1386 0 301 255 277 16 chr9 5218583 5218767 -112643860 + MIR SINE MIR 3 234 -28 187 268 0 0 chr9 5218739 5218780 -112643847 + L2 LINE L2 3211 3251 -21 * 633 225 98 140 chr9 5218790 5219190 -112643437 - LTR33 LTR ERVL -138 383 1 3170 39 0 0 chr9 5219199 5219559 -112643068 - L1PA5 LINE L1 0 6154 5795 2007 161 26 77 chr9 5220206 5220697 -112641930 - MER31B LTR ERV1 0 466 1 1115 289 82 17 chr9 5220793 5221257 -112641370 + LTR33 LTR ERVL 12 505 -16 211 281 0 0 chr9 5221495 5221552 -112641075 + (TATATG)n Simple_repeat Simple_repeat 6 62 0 257 223 36 0 chr9 5221686 5221796 -112640831 - L1MC3 LINE L1 -1139 6702 6571 238 232 29 14 chr9 5221746 5221815 -112640812 + L1MCa LINE L1 1995 2064 -4362 * 263 333 0 0 chr9 5221838 5221928 -112640699 + L1MC4 LINE L1 6614 6703 -1339 231 314 47 0 chr9 5221936 5222022 -112640605 - L1MC4 LINE L1 -1339 6703 6614 3296 145 41 23 chr9 5222571 5223135 -112639492 - L1MB7 LINE L1 -19 6165 5592 1077 219 23 0 chr9 5223194 5223409 -112639218 + MIR SINE MIR 9 228 -34 366 239 0 54 chr9 5224085 5224177 -112638450 + MER21B LTR ERV1 1 87 -776 1248 226 124 6 chr9 5224200 5224523 -112638104 + MER21B LTR ERV1 20 380 -483 4348 39 8 0 chr9 5224627 5225140 -112637487 - L1PA5 LINE L1 -384 5770 5254 3354 58 2 2 chr9 5225151 5225550 -112637077 + L1PA5 LINE L1 5755 6153 -1 241 176 27 0 chr9 5226102 5226176 -112636451 + (TA)n Simple_repeat Simple_repeat 2 77 0 521 311 102 22 chr9 5226193 5226794 -112635833 + L2 LINE L2 2458 3174 -139 269 257 112 73 chr9 5228005 5228184 -112634443 - MER5A DNA MER1_type 0 189 4 229 190 69 0 chr9 5228777 5228835 -112633792 - MIR SINE MIR -98 110 49 424 258 108 24 chr9 5228851 5229018 -112633609 - MER112 DNA MER1_type -9 251 71 424 88 206 15 chr9 5229516 5229584 -112633043 + AluS SINE Alu 4 84 -228 561 287 89 3 chr9 5231159 5231441 -112631186 - L1ME4a LINE L1 -267 5854 5549 803 146 0 8 chr9 5231737 5231867 -112630760 - FLAM_C SINE Alu -8 135 7 2386 80 30 0 chr9 5231908 5232209 -112630418 - AluSx SINE Alu -2 310 1 38 39 0 0 chr9 5232886 5232938 -112629689 + AT_rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr9 5233221 5233242 -112629385 + AT_rich Low_complexity Low_complexity 1 21 0 281 289 185 33 chr9 5233278 5233641 -112628986 + L1ME4a LINE L1 5581 5998 -123 945 188 16 36 chr9 5233659 5233851 -112628776 - MER20 DNA MER1_type 0 219 32 22 70 0 0 chr9 5233908 5233951 -112628676 + AT_rich Low_complexity Low_complexity 1 43 0 2021 221 80 39 chr9 5234389 5235062 -112627565 - L1MD1 LINE L1 0 6242 5542 1082 278 67 9 chr9 5235194 5235630 -112626997 + MLT1C LTR MaLR 1 461 -6 233 200 0 0 chr9 5236135 5236185 -112626442 + (CAGAGA)n Simple_repeat Simple_repeat 3 52 0 4732 129 6 0 chr9 5240914 5241641 -112620986 - L1PA16 LINE L1 -4 6162 5432 3136 258 50 30 chr9 5242531 5243768 -112618859 - L1MD1 LINE L1 -872 5274 4013 1288 238 84 35 chr9 5244000 5244462 -112618165 - L1MD1 LINE L1 0 6242 5758 414 341 17 12 chr9 5244585 5244758 -112617869 + MER5B DNA MER1_type 5 178 0 351 0 0 0 chr9 5245078 5245117 -112617510 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 22 0 0 0 chr9 5245703 5245725 -112616902 + AT_rich Low_complexity Low_complexity 1 22 0 2858 122 7 5 chr9 5248510 5248937 -112613690 - MSTA LTR MaLR 0 428 1 380 305 19 0 chr9 5249080 5249234 -112613393 - MER5B DNA MER1_type -21 157 1 232 229 33 0 chr9 5250257 5250318 -112612309 - MER5B DNA MER1_type -33 145 83 243 71 214 0 chr9 5250321 5250363 -112612264 + LTR50 LTR ERVL 272 322 -473 595 215 19 65 chr9 5250513 5250774 -112611853 + L1MA4 LINE L1 3210 3458 -4107 * 11406 169 21 41 chr9 5250771 5251332 -112611295 + L1MA4 LINE L1 4156 4727 -2992 2229 114 0 7 chr9 5251332 5251639 -112610988 + AluSx SINE Alu 3 307 -5 11406 169 21 41 chr9 5251639 5254714 -112607913 + L1MA4 LINE L1 4727 7712 -7 900 125 33 20 chr9 5256299 5256451 -112606176 - MSTC LTR MaLR -273 155 2 2030 249 69 25 chr9 5256613 5257307 -112605320 + L1MD1 LINE L1 5509 6233 -9 230 207 0 0 chr9 5257310 5257368 -112605259 + L1MA8 LINE L1 5291 5348 -823 422 163 12 12 chr9 5257379 5257465 -112605162 + L1MB3 LINE L1 6081 6166 -17 1786 178 55 17 chr9 5257485 5257902 -112604725 + L1MA8 LINE L1 5843 6275 -16 356 264 91 30 chr9 5257909 5258140 -112604487 + L1M4 LINE L1 5 249 -6293 356 222 60 26 chr9 5258413 5258530 -112604097 + L1M4 LINE L1 802 922 -5724 231 229 0 0 chr9 5258582 5258630 -112603997 + L1M4 LINE L1 1412 1459 -5116 1752 136 0 4 chr9 5258632 5258889 -112603738 - AluSx SINE Alu -8 304 49 1253 289 43 36 chr9 5258925 5259455 -112603172 + L1M3e LINE L1 1439 1972 -5058 * 5375 48 12 2 chr9 5259454 5260357 -112602270 + L1PA7 LINE L1 5020 5928 -226 1077 137 11 42 chr9 5260357 5260547 -112602080 - THE1B LTR MaLR -180 184 1 1726 150 13 37 chr9 5261059 5261359 -112601268 - AluJo SINE Alu -19 293 1 24 91 0 0 chr9 5261836 5261902 -112600725 + AT_rich Low_complexity Low_complexity 1 66 0 357 326 17 34 chr9 5262907 5263085 -112599542 - MER5B DNA MER1_type -3 175 1 2561 184 8 6 chr9 5263197 5263670 -112598957 + MER101 LTR ERV1 1 474 0 1428 219 66 22 chr9 5263709 5264162 -112598465 + L1MD1 LINE L1 5770 6242 0 2409 228 78 50 chr9 5264432 5264795 -112597832 + L1MB2 LINE L1 4076 4427 -1719 3654 88 32 4 chr9 5264795 5265292 -112597335 + MER9 LTR ERVK 1 511 0 2409 228 78 50 chr9 5265292 5265901 -112596726 + L1MB2 LINE L1 4427 5075 -1071 228 265 163 25 chr9 5265946 5266142 -112596485 + L1MB2 LINE L1 5052 5274 -872 23 0 0 0 chr9 5266474 5266497 -112596130 + AT_rich Low_complexity Low_complexity 1 23 0 21339 173 39 18 chr9 5266688 5272428 -112590199 + L1PA11 LINE L1 914 7609 -3 441 0 0 0 chr9 5272600 5272649 -112589978 + (TG)n Simple_repeat Simple_repeat 1 49 0 1586 128 28 17 chr9 5273151 5273440 -112589187 + LTR22B LTR ERVK 1 292 -200 12290 97 10 1 chr9 5273440 5275097 -112587530 + HERVK22 LTR ERVK 5165 6837 0 2594 140 30 34 chr9 5275097 5275591 -112587036 + LTR22B LTR ERVK 1 492 0 1274 139 29 8 chr9 5278593 5278831 -112583796 + L1MA4 LINE L1 6046 6288 -12 192 326 58 0 chr9 5280112 5280198 -112582429 - L2 LINE L2 -23 3290 3200 1005 214 150 20 chr9 5280501 5280847 -112581780 - MLT1C LTR MaLR -17 450 60 1793 191 42 35 chr9 5280853 5281278 -112581349 - MSTC LTR MaLR 0 428 1 1433 233 50 94 chr9 5281435 5282149 -112580478 + L1MD1 LINE L1 5546 6228 -14 3467 227 38 15 chr9 5282157 5283000 -112579627 + L1MB2 LINE L1 5291 6152 -19 1937 161 79 12 chr9 5283028 5283445 -112579182 + L1MA8 LINE L1 5843 6287 -4 321 254 85 34 chr9 5283451 5283684 -112578943 + L1M4c LINE L1 467 955 -6082 423 0 0 0 chr9 5283875 5283922 -112578705 + (CA)n Simple_repeat Simple_repeat 2 48 0 366 301 175 6 chr9 5284005 5284331 -112578296 + L1M4c LINE L1 1266 1646 -5462 7963 14 0 0 chr9 5284348 5285604 -112577023 - L1HS LINE L1 0 6155 4900 * 18776 24 0 0 chr9 5285599 5287831 -112574796 + L1HS LINE L1 2673 4904 -1242 443 217 24 63 chr9 5287826 5288033 -112574594 + L1M4c LINE L1 1629 1827 -5281 * 1282 313 47 5 chr9 5288028 5288776 -112573851 + L1 LINE L1 3547 4325 -1821 2479 281 46 24 chr9 5288778 5290953 -112571674 + L1M3c LINE L1 1224 3167 -3939 7148 50 0 0 chr9 5290953 5291963 -112570664 - L1PA7 LINE L1 -5 6149 5139 2479 281 46 24 chr9 5291963 5292133 -112570494 + L1M3c LINE L1 3167 3332 -3774 928 173 42 0 chr9 5292167 5292358 -112570269 + L1PB1 LINE L1 2 200 -6663 10602 131 70 16 chr9 5292358 5295577 -112567050 + L1PB1 LINE L1 634 3678 -3189 339 25 0 0 chr9 5295577 5295617 -112567010 + (CA)n Simple_repeat Simple_repeat 2 41 0 10602 131 70 16 chr9 5295617 5295965 -112566662 + L1PB1 LINE L1 3678 6866 -1 2082 252 26 6 chr9 5295975 5296658 -112565969 + L1M3c LINE L1 3348 4044 -3062 682 271 80 3 chr9 5296650 5297023 -112565604 + L1 LINE L1 2810 3211 -2935 * 5007 167 26 7 chr9 5297026 5298757 -112563870 - L1PB4 LINE L1 -12 6201 4246 12763 155 23 31 chr9 5298761 5302148 -112560479 - L1PA6 LINE L1 0 6154 2789 428 128 23 23 chr9 5302159 5302245 -112560382 - L1PB4 LINE L1 -3362 2841 2756 16973 109 31 12 chr9 5302245 5303447 -112559180 - MER57B-int LTR ERV1 -744 6793 5616 6699 112 27 18 chr9 5303447 5304508 -112558119 + MER11C LTR ERVK 1 1071 0 16973 109 31 12 chr9 5304508 5306072 -112556555 - MER57B-int LTR ERV1 -1921 5616 3974 2264 116 11 24 chr9 5306061 5306442 -112556185 - MER57B-int LTR ERV1 -3000 2946 2571 * 838 124 29 0 chr9 5306452 5306589 -112556038 - MER57B-int LTR ERV1 -4616 2921 2781 661 157 0 9 chr9 5306585 5306700 -112555927 - MER57B-int LTR ERV1 -3929 2017 1904 * 3395 134 46 10 chr9 5306701 5307271 -112555356 - MER57B-int LTR ERV1 -4231 3585 3037 204 40 0 0 chr9 5307271 5307296 -112555331 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 3395 134 46 10 chr9 5307296 5307499 -112555128 - MER57B-int LTR ERV1 -4779 3037 650 1202 109 0 0 chr9 5307491 5307666 -112554961 - MER57B-int LTR ERV1 -6570 967 793 * 4092 130 24 13 chr9 5307654 5308331 -112554296 - MER57B-int LTR ERV1 -6853 684 1 2508 138 35 19 chr9 5308331 5308758 -112553869 - MER57B LTR ERV1 0 434 1 2299 236 41 70 chr9 5308759 5310437 -112552190 - L1PB4 LINE L1 -3674 2529 690 661 358 42 0 chr9 5310423 5310808 -112551819 - L1PA15-16 LINE L1 -5286 1563 1163 * 848 310 33 35 chr9 5311087 5311638 -112550989 - L1PA15-16 LINE L1 -6297 552 3 3381 180 41 51 chr9 5311639 5312668 -112549959 - L1MCa LINE L1 -4588 1838 731 366 248 19 9 chr9 5313731 5313836 -112548791 - LTR39 LTR ERV1 -81 702 597 992 198 18 94 chr9 5313914 5314253 -112548374 - LTR39 LTR ERV1 -467 316 4 759 299 43 4 chr9 5314393 5314627 -112548000 - MIR SINE MIR 0 262 20 5735 141 11 25 chr9 5315097 5316121 -112546506 + MSTA-int LTR MaLR 572 1580 0 1764 150 203 11 chr9 5316121 5316480 -112546147 + MSTA LTR MaLR 1 428 0 5064 167 33 10 chr9 5317072 5318101 -112544526 - Ricksha_b DNA DNA -13 1241 240 573 197 71 0 chr9 5318112 5318239 -112544388 - Ricksha_b DNA DNA -1117 137 2 2847 232 43 20 chr9 5318906 5319669 -112542958 + L1MCa LINE L1 31 811 -5615 2615 212 16 18 chr9 5319665 5320448 -112542179 + L1PA15-16 LINE L1 1637 2428 -4369 * 2475 116 13 16 chr9 5320516 5320903 -112541724 + MSTB1 LTR MaLR 1 386 -46 5396 146 4 10 chr9 5320903 5322179 -112540448 + L1PA15 LINE L1 4879 6144 -21 2421 247 135 73 chr9 5322196 5322981 -112539646 + L1M4 LINE L1 2247 2982 -3164 1830 164 7 68 chr9 5322981 5323408 -112539219 + MER57A LTR ERV1 3 403 0 2421 247 135 73 chr9 5323408 5323687 -112538940 + L1M4 LINE L1 2982 3242 -2904 2030 139 0 0 chr9 5323687 5323981 -112538646 + AluSx SINE Alu 1 294 -18 2421 247 135 73 chr9 5323981 5324298 -112538329 + L1M4 LINE L1 3242 3538 -2608 2193 108 14 0 chr9 5324298 5324584 -112538043 + AluSc SINE Alu 1 290 -19 2421 247 135 73 chr9 5324584 5324645 -112537982 + L1M4 LINE L1 3538 3594 -2552 13474 89 9 0 chr9 5324645 5327356 -112535271 + L1PA8 LINE L1 3425 6170 -2 2421 247 135 73 chr9 5327356 5327654 -112534973 + L1M4 LINE L1 3594 4099 -2047 2067 166 42 14 chr9 5327663 5328096 -112534531 + L1MA7 LINE L1 5528 5972 -328 760 228 30 42 chr9 5328095 5328332 -112534295 + L1MCb LINE L1 605 838 -5207 * 2447 200 73 10 chr9 5328343 5329042 -112533585 + L1MCb LINE L1 893 1635 -4929 881 194 0 0 chr9 5329046 5329216 -112533411 + L1MB4 LINE L1 3999 4168 -1978 1875 259 75 26 chr9 5329349 5330039 -112532588 - L1M2b LINE L1 -6485 724 1 1515 145 25 0 chr9 5330068 5330350 -112532277 + L1MA7 LINE L1 6001 6289 -2 3247 165 23 59 chr9 5330376 5330735 -112531892 + L1MB4 LINE L1 5435 5805 -375 339 25 0 0 chr9 5330735 5330775 -112531852 + (TG)n Simple_repeat Simple_repeat 2 41 0 3247 165 23 59 chr9 5330775 5331189 -112531438 + L1MB4 LINE L1 5805 6180 0 5009 178 23 22 chr9 5331193 5331481 -112531146 + L1MC2 LINE L1 5023 5309 -1035 12364 161 19 15 chr9 5331481 5332930 -112529697 - L1PA11 LINE L1 -4 6170 4729 197 33 33 0 chr9 5332930 5332960 -112529667 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 12364 161 19 15 chr9 5332960 5334653 -112527974 - L1PA11 LINE L1 -1445 4729 3022 5009 178 23 22 chr9 5334653 5335679 -112526948 + L1MC2 LINE L1 5309 6343 -1 1022 161 15 62 chr9 5335679 5335928 -112526699 + L1MC2 LINE L1 6089 6336 -8 274 256 82 73 chr9 5336265 5336498 -112526129 + MLT1J LTR MaLR 61 333 -178 24745 105 16 14 chr9 5337331 5342518 -112520109 + L1P3 LINE L1 10 5255 -1206 13582 160 19 46 chr9 5342520 5345101 -112517526 - L1M2 LINE L1 -4337 2512 1 1575 164 10 31 chr9 5345400 5345693 -112516934 - AluJb SINE Alu -25 287 1 26 0 0 0 chr9 5346051 5346077 -112516550 + AT_rich Low_complexity Low_complexity 1 26 0 2049 114 41 6 chr9 5346769 5347112 -112515515 - L1MA4A LINE L1 -138 6165 5811 2029 216 64 11 chr9 5347114 5347568 -112515059 - L1M2 LINE L1 -6361 488 11 334 186 14 0 chr9 5347562 5347632 -112514995 - L1M4 LINE L1 -5603 939 869 * 2383 86 0 0 chr9 5347735 5348025 -112514602 + AluY SINE Alu 1 290 -21 1121 279 75 83 chr9 5348140 5348972 -112513655 - L1M4 LINE L1 -5716 826 2 214 172 0 35 chr9 5349214 5349272 -112513355 + CT-rich Low_complexity Low_complexity 2 57 0 1741 156 52 0 chr9 5349290 5349579 -112513048 - AluSx SINE Alu -8 304 1 423 263 95 22 chr9 5349820 5350094 -112512533 - L1M4 LINE L1 -2984 3864 3571 226 222 0 0 chr9 5350458 5350503 -112512124 + (TG)n Simple_repeat Simple_repeat 2 46 0 523 267 119 9 chr9 5350573 5350783 -112511844 - Charlie2 DNA MER1_type 0 2862 2630 14903 131 21 12 chr9 5350963 5353359 -112509268 - Tigger1 DNA MER2_type -2 2416 1 444 266 101 60 chr9 5354224 5354423 -112508204 - MIR SINE MIR -42 220 14 26 0 0 0 chr9 5354607 5354633 -112507994 + AT_rich Low_complexity Low_complexity 1 26 0 340 312 72 38 chr9 5354641 5354878 -112507749 + L1 LINE L1 4268 4512 -1634 42144 49 11 1 chr9 5355532 5361626 -112501001 + L1PA4 LINE L1 1 6151 -4 7323 225 46 14 chr9 5361933 5362300 -112500327 + L1MB7 LINE L1 3365 3719 -2427 1207 179 8 49 chr9 5362300 5362546 -112500081 - MER46A DNA MER2_type 0 236 1 7323 225 46 14 chr9 5362546 5362979 -112499648 + L1MB7 LINE L1 3719 4137 -2009 1945 169 33 0 chr9 5362979 5363311 -112499316 - MER2 DNA MER2_type -1 343 1 7323 225 46 14 chr9 5363311 5364481 -112498146 + L1MB7 LINE L1 4137 5400 -746 2837 19 0 0 chr9 5365881 5366197 -112496430 - AluYb8 SINE Alu -2 316 1 332 252 89 158 chr9 5366434 5366859 -112495768 - L1M4 LINE L1 -5907 942 547 2662 167 22 3 chr9 5367106 5367736 -112494891 + L1MB7 LINE L1 5386 6175 -9 4459 166 59 34 chr9 5369157 5370460 -112492167 - L1MB3 LINE L1 -3 6180 4848 1171 171 9 57 chr9 5371433 5371661 -112490966 - AluJo SINE Alu -95 217 1 2237 111 0 3 chr9 5371894 5372201 -112490426 - AluSg SINE Alu -4 306 1 2100 163 3 9 chr9 5373438 5373787 -112488840 - MER7A DNA MER2_type 0 346 2 1573 164 95 0 chr9 5374069 5374331 -112488296 - AluJo SINE Alu -25 287 1 1220 175 69 0 chr9 5374696 5374913 -112487714 - MER46A DNA MER2_type -3 233 2 323 369 6 18 chr9 5375143 5375311 -112487316 + MER5A DNA MER1_type 2 167 -22 * 507 271 7 21 chr9 5375175 5375319 -112487308 - MER5A DNA MER1_type -22 167 26 278 208 0 0 chr9 5375741 5375789 -112486838 - L2 LINE L2 0 3313 3266 4220 186 37 13 chr9 5376233 5377284 -112485343 - L1MB7 LINE L1 -1 6183 5110 457 305 140 5 chr9 5377296 5377496 -112485131 - L2 LINE L2 -1391 1923 1697 302 320 47 62 chr9 5380341 5380469 -112482158 + L2 LINE L2 3146 3271 -1 335 304 49 10 chr9 5380611 5380713 -112481914 - MIR SINE MIR -139 123 18 4662 160 44 21 chr9 5381137 5381337 -112481290 - L1MB2 LINE L1 -2 6169 5975 2210 109 7 3 chr9 5381337 5381641 -112480986 - AluSg SINE Alu -5 305 1 4662 160 44 21 chr9 5381641 5381968 -112480659 - L1MB2 LINE L1 -196 5975 5657 1835 137 64 20 chr9 5381968 5382325 -112480302 - THE1C LTR MaLR -2 373 1 4662 160 44 21 chr9 5382325 5382828 -112479799 - L1MB2 LINE L1 -514 5657 5121 2625 251 56 18 chr9 5382834 5383693 -112478934 - L1ME3 LINE L1 -8 6154 5263 14718 126 31 16 chr9 5383726 5385838 -112476789 - Tigger1 DNA MER2_type -1 2417 265 1411 205 0 0 chr9 5385838 5386077 -112476550 - MER8 DNA MER2_type 0 239 1 14718 126 31 16 chr9 5386077 5386346 -112476281 - Tigger1 DNA MER2_type -2153 265 1 447 278 124 36 chr9 5386374 5386680 -112475947 - L1MC/D LINE L1 -2179 5629 5297 451 262 78 85 chr9 5386859 5387332 -112475295 - HAL1 LINE L1 -327 2180 1711 2165 101 0 0 chr9 5387636 5387912 -112474715 + AluSg SINE Alu 1 276 -34 1999 141 14 0 chr9 5388016 5388313 -112474314 + AluSx SINE Alu 9 309 -3 1104 174 47 0 chr9 5389226 5389416 -112473211 + MER3 DNA MER1_type 2 200 -9 214 409 64 0 chr9 5389794 5389904 -112472723 - L2 LINE L2 0 3272 3156 30 0 0 0 chr9 5390729 5390759 -112471868 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr9 5391233 5391256 -112471371 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr9 5391410 5391435 -112471192 + AT_rich Low_complexity Low_complexity 1 25 0 2329 92 0 25 chr9 5391632 5391949 -112470678 + AluSc SINE Alu 1 309 0 21 57 0 0 chr9 5392112 5392147 -112470480 + AT_rich Low_complexity Low_complexity 1 35 0 393 349 54 46 chr9 5392212 5392529 -112470098 - L2 LINE L2 -219 3053 2735 315 233 17 0 chr9 5394103 5394163 -112468464 + L1MEd LINE L1 112 172 -5947 664 217 119 7 chr9 5394170 5394313 -112468314 + MER8 DNA MER2_type 1 159 -80 41 21 0 0 chr9 5394314 5394362 -112468265 + AT_rich Low_complexity Low_complexity 1 48 0 482 129 0 0 chr9 5394471 5394541 -112468086 - Tigger2 DNA MER2_type -2648 70 1 1623 282 74 33 chr9 5394602 5395485 -112467142 + L1MEd LINE L1 238 1156 -4963 419 305 0 0 chr9 5395533 5395638 -112466989 - MIR SINE MIR -146 116 12 740 271 78 29 chr9 5395673 5395917 -112466710 - MIR SINE MIR 0 262 7 13936 129 39 30 chr9 5398043 5400439 -112462188 + Tigger1 DNA MER2_type 1 2417 -1 24 53 0 0 chr9 5400682 5400720 -112461907 + AT_rich Low_complexity Low_complexity 1 38 0 32 43 0 0 chr9 5400959 5401005 -112461622 + AT_rich Low_complexity Low_complexity 1 46 0 25 31 0 0 chr9 5401144 5401176 -112461451 + AT_rich Low_complexity Low_complexity 1 32 0 734 198 21 88 chr9 5403397 5403589 -112459038 + AluJb SINE Alu 114 292 -20 431 320 47 13 chr9 5403650 5403830 -112458797 + MIR3 SINE MIR 1 185 -23 2662 46 0 0 chr9 5404648 5404955 -112457672 - AluY SINE Alu -4 307 1 449 189 72 46 chr9 5405746 5405796 -112456831 + MER103 DNA DNA 10 57 -109 3651 194 58 53 chr9 5405796 5406760 -112455867 - LTR5 LTR ERVK 0 969 1 449 189 72 46 chr9 5406760 5406862 -112455765 + MER103 DNA DNA 57 166 0 266 171 260 14 chr9 5407660 5407806 -112454821 - L1ME4a LINE L1 -202 5919 5738 21 0 0 0 chr9 5408243 5408264 -112454363 + AT_rich Low_complexity Low_complexity 1 21 0 30 0 0 0 chr9 5408293 5408323 -112454304 + AT_rich Low_complexity Low_complexity 1 30 0 299 53 0 0 chr9 5409827 5409865 -112452762 - THE1-int LTR MaLR -125 1455 1418 26 0 0 0 chr9 5409879 5409905 -112452722 + GC_rich Low_complexity Low_complexity 1 26 0 2183 101 70 20 chr9 5410878 5411235 -112451392 - THE1C LTR MaLR 0 375 1 348 279 117 33 chr9 5411375 5411615 -112451012 + L1ME LINE L1 5449 5708 -413 22 0 0 0 chr9 5411697 5411719 -112450908 + AT_rich Low_complexity Low_complexity 1 22 0 412 323 57 6 chr9 5411834 5411992 -112450635 - MIR SINE MIR -79 183 18 1527 214 24 40 chr9 5412349 5412727 -112449900 - MLT1A2 LTR MaLR -2 372 1 2474 84 0 0 chr9 5413018 5413326 -112449301 + AluY SINE Alu 2 309 -2 22 0 0 0 chr9 5413359 5413381 -112449246 + AT_rich Low_complexity Low_complexity 1 22 0 2335 70 0 10 chr9 5422458 5422756 -112439871 - AluY SINE Alu -16 295 1 22 35 0 0 chr9 5423239 5423268 -112439359 + AT_rich Low_complexity Low_complexity 1 29 0 34787 90 17 12 chr9 5424676 5430796 -112431831 + L1PA6 LINE L1 12 6146 -8 252 0 0 0 chr9 5436952 5436980 -112425647 + (T)n Simple_repeat Simple_repeat 1 28 0 225 0 0 0 chr9 5437185 5437210 -112425417 + (A)n Simple_repeat Simple_repeat 1 25 0 225 0 0 0 chr9 5438693 5438718 -112423909 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 6795 66 9 6 chr9 5438718 5439835 -112422792 + L1PA7 LINE L1 5030 6154 0 702 275 140 5 chr9 5439840 5440047 -112422580 - MIR SINE MIR -10 252 18 21 36 0 0 chr9 5440110 5440138 -112422489 + AT_rich Low_complexity Low_complexity 1 28 0 222 310 0 0 chr9 5440398 5440456 -112422171 - L2 LINE L2 -12 3301 3244 794 146 19 149 chr9 5440750 5441018 -112421609 + MLT1A1 LTR MaLR 116 348 -17 238 280 75 11 chr9 5441074 5441164 -112421463 - L2 LINE L2 -548 2766 2671 458 177 308 0 chr9 5441164 5441294 -112421333 + Charlie1 DNA MER1_type 1 170 -2591 * 1348 171 58 3 chr9 5441291 5441583 -112421044 + Charlie1 DNA MER1_type 2454 2761 0 3129 192 97 142 chr9 5441656 5441856 -112420771 - Charlie2a DNA MER1_type 0 2862 2655 556 88 0 0 chr9 5441856 5441936 -112420691 + Alu SINE Alu 217 296 -15 3129 192 97 142 chr9 5441936 5443742 -112418885 - Charlie2a DNA MER1_type -207 2655 871 1258 184 37 110 chr9 5443742 5444116 -112418511 - MLT1A1 LTR MaLR 0 365 19 242 248 192 35 chr9 5444134 5444332 -112418295 - Charlie2a DNA MER1_type -1993 869 641 338 342 167 30 chr9 5444499 5444880 -112417747 - L2 LINE L2 -773 2541 2077 3553 138 60 18 chr9 5444880 5445561 -112417066 - MER67C LTR ERV1 0 710 1 338 342 167 30 chr9 5445561 5445670 -112416957 - L2 LINE L2 -1237 2077 1984 736 202 8 0 chr9 5446325 5446449 -112416178 - MER68 LTR ERV1 0 562 438 * 1257 166 85 0 chr9 5446446 5446669 -112415958 - MER68 LTR ERV1 -320 242 1 2049 183 28 5 chr9 5446913 5446924 -112415703 - L1M4 LINE L1 -695 5489 5480 3935 161 25 4 chr9 5446924 5447650 -112414977 - L1PB4 LINE L1 -3 6153 5413 2049 183 28 5 chr9 5447650 5448235 -112414392 - L1M4 LINE L1 -704 5480 4887 1868 146 3 6 chr9 5448233 5448562 -112414065 + L1M4 LINE L1 4556 4883 -1263 * 672 265 108 79 chr9 5448869 5449630 -112412997 - L1ME4a LINE L1 -74 6047 5258 369 0 0 0 chr9 5451841 5451882 -112410745 + (TG)n Simple_repeat Simple_repeat 2 42 0 23 86 0 0 chr9 5453634 5453692 -112408935 + AT_rich Low_complexity Low_complexity 1 58 0 2610 42 0 3 chr9 5454480 5454789 -112407838 - AluY SINE Alu -3 308 1 2396 79 0 7 chr9 5455196 5455500 -112407127 - AluSq SINE Alu -11 302 1 495 189 175 63 chr9 5456812 5457018 -112405609 + MER106A DNA MER1_type 7 235 -1 11370 124 20 18 chr9 5457194 5459118 -112403509 + L1PA7 LINE L1 1383 4098 -3486 18397 79 10 1 chr9 5459120 5462500 -112400127 + L1PA7 LINE L1 4161 7588 -4 21 0 0 0 chr9 5462664 5462685 -112399942 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 5462803 5462825 -112399802 + AT_rich Low_complexity Low_complexity 1 22 0 312 188 111 68 chr9 5462944 5463061 -112399566 - L1M4 LINE L1 -689 5485 5364 312 308 42 30 chr9 5463389 5463569 -112399058 - MIR3 SINE MIR -23 185 1 284 330 93 22 chr9 5464227 5464409 -112398218 + L2 LINE L2 2590 2784 -530 20541 180 39 14 chr9 5464476 5467424 -112395203 - L1PA13 LINE L1 -2 6812 3941 2228 107 0 0 chr9 5467424 5467714 -112394913 - AluSx SINE Alu -16 296 7 20541 180 39 14 chr9 5467714 5470883 -112391744 - L1PA13 LINE L1 -2873 3941 384 2832 120 5 2 chr9 5470910 5471318 -112391309 - L1PA12 LINE L1 -5579 2002 1594 2512 260 60 7 chr9 5471330 5472103 -112390524 - L1PA12 LINE L1 -4509 3072 2259 348 202 36 12 chr9 5472405 5472489 -112390138 - L1PA12 LINE L1 -5412 2169 2084 718 327 148 26 chr9 5472743 5473162 -112389465 - L1PA12 LINE L1 -6317 1257 788 4529 184 50 11 chr9 5473186 5474607 -112388020 + L1PB4 LINE L1 4321 5809 -347 315 0 0 0 chr9 5474607 5474642 -112387985 + (CA)n Simple_repeat Simple_repeat 2 36 0 4529 184 50 11 chr9 5474642 5474992 -112387635 + L1PB4 LINE L1 5809 6144 -12 281 239 71 9 chr9 5474998 5475111 -112387516 + HsTC2 DNA Tc2 251 370 -1528 1688 233 118 31 chr9 5475167 5476507 -112386120 + L1MEc LINE L1 1850 3290 -2925 4851 129 16 0 chr9 5476509 5477244 -112385383 + L1P3 LINE L1 2 748 -5713 9415 62 1 1 chr9 5477244 5479248 -112383379 + L1PA4 LINE L1 4145 6155 0 3047 52 0 5 chr9 5479306 5479694 -112382933 + L1PA7 LINE L1 5769 6154 0 2409 215 178 96 chr9 5479694 5480679 -112381948 + L1MEc LINE L1 3281 4183 -2032 737 142 17 0 chr9 5480679 5480799 -112381828 + AluSg/x SINE Alu 185 306 -6 2409 215 178 96 chr9 5480799 5481406 -112381221 + L1MEc LINE L1 4183 5133 -1082 9899 162 25 27 chr9 5481414 5483650 -112378977 + L1M1 LINE L1 1931 4166 -3399 2234 101 0 13 chr9 5483650 5483957 -112378670 + AluSq SINE Alu 1 303 -10 9899 162 25 27 chr9 5483957 5485581 -112377046 + L1M1 LINE L1 4166 5792 -1773 1589 141 42 15 chr9 5485582 5485845 -112376782 + AluJo SINE Alu 25 294 -18 978 188 11 21 chr9 5486839 5487025 -112375602 - MER5A DNA MER1_type -1 188 5 4165 173 58 13 chr9 5488248 5488686 -112373941 - L1MB7 LINE L1 -20 6164 5747 2126 122 0 10 chr9 5488686 5488990 -112373637 + AluSx SINE Alu 1 301 -11 4165 173 58 13 chr9 5488990 5489385 -112373242 - L1MB7 LINE L1 -437 5747 5294 212 0 36 0 chr9 5489962 5489990 -112372637 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 457 291 138 9 chr9 5490166 5490602 -112372025 + L1 LINE L1 3196 3687 -2459 21494 169 44 24 chr9 5490714 5492688 -112369939 + L1PA10 LINE L1 1 1933 -4550 2116 121 3 3 chr9 5492688 5492985 -112369642 - AluSq SINE Alu -15 298 2 21494 169 44 24 chr9 5492985 5496407 -112366220 + L1PA10 LINE L1 1933 5661 -822 2228 118 3 0 chr9 5496407 5496704 -112365923 + AluSx SINE Alu 1 298 -14 21494 169 44 24 chr9 5496704 5497545 -112365082 + L1PA10 LINE L1 5661 6483 0 4023 253 117 49 chr9 5497632 5498700 -112363927 + L2 LINE L2 1361 2355 -958 2403 73 0 3 chr9 5498700 5499000 -112363627 - AluY SINE Alu -12 299 1 4023 253 117 49 chr9 5499000 5499280 -112363347 + L2 LINE L2 2355 2614 -699 3612 123 13 8 chr9 5499280 5499802 -112362825 + MER1A DNA MER1_type 3 527 0 4023 253 117 49 chr9 5499802 5500278 -112362349 + L2 LINE L2 2614 3312 -1 244 303 40 0 chr9 5500373 5500472 -112362155 + L1 LINE L1 3987 4089 -2057 331 226 99 23 chr9 5500540 5500761 -112361866 + L1 LINE L1 4231 4468 -1678 3533 226 62 51 chr9 5500847 5501626 -112361001 + L1PA12 LINE L1 4 802 -6779 2230 127 3 0 chr9 5501626 5501933 -112360694 - AluSx SINE Alu -2 310 3 3533 226 62 51 chr9 5501933 5502339 -112360288 + L1PA12 LINE L1 802 1202 -6379 6383 79 34 0 chr9 5502343 5503779 -112358848 + L1PA11 LINE L1 4716 6174 0 5784 50 143 60 chr9 5503813 5504885 -112357742 + MER11A LTR ERVK 1 1266 0 342 324 115 61 chr9 5504887 5505329 -112357298 + L1ME3A LINE L1 4581 5046 -1100 568 325 99 11 chr9 5505474 5506024 -112356603 + L1ME3A LINE L1 5256 5847 -323 466 259 114 6 chr9 5506194 5506352 -112356275 + L2 LINE L2 3135 3309 -4 25 0 0 0 chr9 5506977 5507002 -112355625 + AT_rich Low_complexity Low_complexity 1 25 0 474 247 213 7 chr9 5507577 5507727 -112354900 + MER5A DNA MER1_type 9 189 0 197 167 24 0 chr9 5507906 5507948 -112354679 - L2 LINE L2 0 3313 3271 394 181 26 60 chr9 5508552 5508668 -112353959 + MER45 DNA AcHobo 1463 1574 -7 300 313 134 18 chr9 5508729 5508841 -112353786 - L2 LINE L2 -206 3066 2942 190 278 28 28 chr9 5509880 5509952 -112352675 + L2 LINE L2 3161 3232 -40 880 214 54 17 chr9 5510749 5511043 -112351584 + L1M1 LINE L1 3358 3662 -3903 2239 219 33 10 chr9 5511049 5511377 -112351250 + L1M1 LINE L1 4027 4377 -3188 2099 122 0 3 chr9 5511377 5511665 -112350962 + AluSx SINE Alu 1 287 -25 2239 219 33 10 chr9 5511665 5511943 -112350684 + L1M1 LINE L1 4377 4647 -2918 1882 255 49 89 chr9 5511938 5512964 -112349663 - L1P3 LINE L1 -5467 994 10 * 352 58 0 39 chr9 5513095 5513147 -112349480 + THE1B LTR MaLR 1 50 -314 530 306 100 24 chr9 5513718 5514279 -112348348 + L2 LINE L2 2503 3174 -139 269 279 101 62 chr9 5515490 5515669 -112346958 - MER5A DNA MER1_type 0 189 4 234 190 69 0 chr9 5516262 5516320 -112346307 - MIR SINE MIR -98 110 49 348 182 164 0 chr9 5516393 5516503 -112346124 - MER112 DNA MER1_type -62 198 71 365 88 206 15 chr9 5517001 5517069 -112345558 + AluS SINE Alu 4 84 -218 447 287 89 3 chr9 5518644 5518926 -112343701 - L1ME4a LINE L1 -267 5854 5549 733 154 0 8 chr9 5519222 5519352 -112343275 - FLAM_C SINE Alu -8 135 7 2391 80 30 0 chr9 5519393 5519695 -112342932 - AluSx SINE Alu -1 311 1 38 39 0 0 chr9 5520372 5520424 -112342203 + AT_rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr9 5520707 5520728 -112341899 + AT_rich Low_complexity Low_complexity 1 21 0 317 239 0 14 chr9 5520829 5520900 -112341727 + L2 LINE L2 3244 3313 0 310 260 273 9 chr9 5520900 5521127 -112341500 + L1ME4a LINE L1 5712 5998 -123 869 188 16 36 chr9 5521145 5521337 -112341290 - MER20 DNA MER1_type 0 219 32 22 70 0 0 chr9 5521394 5521437 -112341190 + AT_rich Low_complexity Low_complexity 1 43 0 437 294 105 57 chr9 5521899 5522423 -112340204 - L1MC/D LINE L1 -2005 5803 5255 416 304 24 16 chr9 5522618 5522743 -112339884 + L2 LINE L2 3183 3308 -5 182 61 0 30 chr9 5524913 5524946 -112337681 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 271 268 143 62 chr9 5525607 5525816 -112336811 - L3 LINE CR1 -7 1570 1345 581 223 4 128 chr9 5527260 5527525 -112335102 + L2 LINE L2 3082 3313 0 263 319 11 21 chr9 5527721 5527815 -112334812 - MIR SINE MIR -24 238 146 671 253 13 13 chr9 5527901 5528051 -112334576 - MIR SINE MIR -111 151 2 240 269 86 6 chr9 5528154 5528264 -112334363 - Charlie7 DNA MER1_type -4 2608 2477 336 200 0 12 chr9 5528264 5528344 -112334283 - MER116 DNA Mariner -1 79 1 240 269 86 6 chr9 5528344 5528408 -112334219 - Charlie7 DNA MER1_type -135 2477 2420 918 223 137 15 chr9 5528412 5528749 -112333878 - Charlie7 DNA MER1_type -1900 712 335 1062 186 45 4 chr9 5529272 5529527 -112333100 + L1MC3 LINE L1 6196 6357 -2 493 96 0 24 chr9 5529856 5529939 -112332688 - L1PB4 LINE L1 -8 6148 6068 300 263 79 0 chr9 5530529 5530605 -112332022 + L2 LINE L2 3191 3272 0 192 384 40 0 chr9 5530684 5530783 -112331844 - L2 LINE L2 -7 3265 3163 381 239 123 29 chr9 5531082 5531220 -112331407 + MIR SINE MIR 80 230 -32 384 232 35 84 chr9 5531623 5531765 -112330862 + MIR SINE MIR 72 206 -56 2268 117 0 0 chr9 5532183 5532482 -112330145 + AluSx SINE Alu 1 299 -13 246 327 58 10 chr9 5532608 5532712 -112329915 - MIR SINE MIR -153 109 1 351 275 59 82 chr9 5534498 5534581 -112328046 - MIR SINE MIR -27 235 152 225 0 0 0 chr9 5534581 5534606 -112328021 + (GA)n Simple_repeat Simple_repeat 2 26 0 351 275 59 82 chr9 5534606 5534770 -112327857 - MIR SINE MIR -110 152 2 276 188 0 0 chr9 5535004 5535052 -112327575 + MER81 DNA DNA 3 50 -64 369 279 121 7 chr9 5536043 5536183 -112326444 - MIR SINE MIR -58 204 49 486 326 56 25 chr9 5536228 5536424 -112326203 - L2 LINE L2 0 3272 3071 24 32 0 0 chr9 5537829 5537860 -112324767 + AT_rich Low_complexity Low_complexity 1 31 0 2231 110 3 0 chr9 5538568 5538868 -112323759 - AluSq SINE Alu -12 301 1 23 33 0 0 chr9 5539149 5539179 -112323448 + AT_rich Low_complexity Low_complexity 1 30 0 25451 60 3 4 chr9 5539193 5545345 -112317282 - L1PA5 LINE L1 -2 6152 3 3580 125 8 43 chr9 5545357 5545549 -112317078 - L1MA6 LINE L1 -22 6278 6081 2110 138 50 56 chr9 5545549 5545926 -112316701 - THE1C LTR MaLR 0 375 1 3580 125 8 43 chr9 5545926 5546228 -112316399 - L1MA6 LINE L1 -219 6081 5770 405 0 0 0 chr9 5546228 5546273 -112316354 + (TG)n Simple_repeat Simple_repeat 2 46 0 3580 125 8 43 chr9 5546273 5546288 -112316339 - L1MA6 LINE L1 -530 5770 5756 710 153 89 24 chr9 5546288 5546412 -112316215 - FLAM_A SINE Alu -1 132 1 3580 125 8 43 chr9 5546412 5546525 -112316102 - L1MA6 LINE L1 -544 5756 5676 205 106 21 21 chr9 5546531 5546578 -112316049 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 45 45 0 0 chr9 5547286 5547352 -112315275 + AT_rich Low_complexity Low_complexity 1 66 0 195 238 188 38 chr9 5547858 5547938 -112314689 - L2 LINE L2 -12 3260 3169 874 281 42 4 chr9 5548280 5548518 -112314109 - MIR SINE MIR -13 249 3 1883 249 55 21 chr9 5548679 5549582 -112313045 - L1ME LINE L1 -438 5724 4787 1930 154 0 0 chr9 5549803 5550101 -112312526 + AluJb SINE Alu 1 298 -14 1390 112 0 39 chr9 5550307 5550513 -112312114 - AluSg/x SINE Alu -10 300 103 361 268 48 26 chr9 5551333 5551539 -112311088 - MLT1L LTR MaLR -363 252 5 194 311 98 59 chr9 5551556 5551810 -112310817 + L2 LINE L2 2603 2866 -448 332 176 0 0 chr9 5551824 5551875 -112310752 - MER58A DNA MER1_type -33 191 141 699 77 30 179 chr9 5551894 5551992 -112310635 + Tigger7 DNA MER2_type 2232 2296 -195 861 137 23 8 chr9 5551992 5552123 -112310504 - FLAM_C SINE Alu 0 133 1 699 77 30 179 chr9 5552123 5552192 -112310435 + Tigger7 DNA MER2_type 2296 2374 -117 814 123 0 16 chr9 5552275 5552397 -112310230 + Tigger7 DNA MER2_type 2368 2487 0 675 248 14 0 chr9 5552397 5552538 -112310089 - MER58A DNA MER1_type 0 143 1 690 296 94 14 chr9 5553213 5553436 -112309191 + MIR SINE MIR 15 255 -7 1083 267 49 21 chr9 5553525 5553813 -112308814 - MLT1J1 LTR MaLR -128 318 23 667 321 109 44 chr9 5554202 5554726 -112307901 - L2 LINE L2 0 3313 2728 2368 97 0 0 chr9 5554726 5555035 -112307592 - AluSc SINE Alu 0 309 1 667 321 109 44 chr9 5555035 5555182 -112307445 - L2 LINE L2 -585 2728 2592 841 285 34 4 chr9 5556898 5557133 -112305494 + MIR SINE MIR 8 249 -13 548 235 53 82 chr9 5557997 5558240 -112304387 + L1ME4a LINE L1 5631 5866 -255 466 17 0 34 chr9 5558301 5558360 -112304267 + AluY SINE Alu 242 298 -13 1845 51 0 0 chr9 5558364 5558578 -112304049 + L1PA5 LINE L1 5933 6146 -8 22 0 0 0 chr9 5558578 5558600 -112304027 + AT_rich Low_complexity Low_complexity 1 22 0 815 272 40 36 chr9 5558934 5559184 -112303443 - MIR SINE MIR -4 258 8 260 200 0 20 chr9 5559364 5559414 -112303213 + MIR SINE MIR 101 149 -59 331 273 147 47 chr9 5559624 5559774 -112302853 + L2 LINE L2 3106 3270 -2 2140 130 19 3 chr9 5560028 5560335 -112302292 - AluJb SINE Alu 0 312 1 348 267 147 47 chr9 5560555 5560705 -112301922 - L2 LINE L2 -2 3270 3106 517 291 32 6 chr9 5561000 5561158 -112301469 - MER5B DNA MER1_type -16 162 1 7801 45 7 0 chr9 5561999 5563334 -112299293 - L1PA4 LINE L1 0 6155 4817 2871 165 49 27 chr9 5563518 5563574 -112299053 - L1MB8 LINE L1 0 6178 6125 2241 147 6 32 chr9 5563574 5563920 -112298707 + MER1B DNA MER1_type 1 337 0 2871 165 49 27 chr9 5563920 5564450 -112298177 - L1MB8 LINE L1 -53 6125 5579 211 194 0 0 chr9 5565024 5565060 -112297567 + CT-rich Low_complexity Low_complexity 5 40 0 1025 181 0 0 chr9 5565155 5565321 -112297306 - FRAM SINE Alu -11 165 1 1444 114 14 5 chr9 5565332 5565552 -112297075 - L1MA5 LINE L1 -5 6295 6074 2320 91 0 3 chr9 5566048 5566346 -112296281 - AluSx SINE Alu -15 297 1 286 235 12 35 chr9 5566629 5566714 -112295913 - MIR SINE MIR -7 255 173 310 193 12 12 chr9 5566715 5566798 -112295829 + (CATTA)n Simple_repeat Simple_repeat 2 84 0 229 369 0 0 chr9 5566850 5566934 -112295693 + MIR SINE MIR 61 144 -118 549 176 0 0 chr9 5567155 5567240 -112295387 + AluJb SINE Alu 1 85 -227 2208 110 0 3 chr9 5567240 5567541 -112295086 - LTR46 LTR ERV1 0 460 161 1963 162 48 14 chr9 5567544 5567902 -112294725 - LTR46-int LTR ERV1 -3 6982 6613 2765 88 0 1 chr9 5568018 5568426 -112294201 + LTR46 LTR ERV1 1 460 0 1293 186 0 4 chr9 5568428 5568654 -112293973 + AluJb SINE Alu 83 307 -5 19688 175 24 19 chr9 5568855 5574892 -112287735 + L1PA12 LINE L1 1 6115 -704 2351 82 0 3 chr9 5574892 5575185 -112287442 + AluY SINE Alu 1 292 -19 19688 175 24 19 chr9 5575185 5575839 -112286788 + L1PA12 LINE L1 6115 6764 -55 227 200 0 0 chr9 5576269 5576309 -112286318 - MLT1K LTR MaLR -359 229 190 183 308 223 0 chr9 5576792 5576922 -112285705 + MIR SINE MIR 34 192 -70 999 208 98 4 chr9 5576946 5577191 -112285436 + MLT1C LTR MaLR 9 276 -191 2540 161 9 0 chr9 5577391 5577826 -112284801 + L1P LINE L1 3951 4389 -1757 269 173 19 0 chr9 5579024 5579076 -112283551 + L3 LINE CR1 1518 1570 -7 328 308 38 53 chr9 5579219 5579352 -112283275 + L2 LINE L2 3142 3272 0 253 349 77 12 chr9 5580583 5580752 -112281875 + L2 LINE L2 2872 3051 -221 227 263 18 0 chr9 5581144 5581201 -112281426 - Charlie8 DNA MER1_type -1010 1407 1350 283 278 151 56 chr9 5581545 5581671 -112280956 + L2 LINE L2 3134 3271 -1 967 162 5 89 chr9 5581973 5582164 -112280463 + FAM SINE Alu 1 175 0 257 269 26 13 chr9 5582262 5582340 -112280287 - L2 LINE L2 -209 3063 2985 4666 190 99 30 chr9 5582754 5583021 -112279606 - MER52A LTR ERV1 -518 1237 990 2338 97 3 3 chr9 5583021 5583331 -112279296 + AluSg SINE Alu 1 310 0 4666 190 99 30 chr9 5583331 5583421 -112279206 - MER52A LTR ERV1 -765 990 908 2298 91 10 3 chr9 5583421 5583729 -112278898 - AluSq SINE Alu -3 310 1 4666 190 99 30 chr9 5583729 5584444 -112278183 - MER52A LTR ERV1 -847 908 1 353 100 20 0 chr9 5584446 5584496 -112278131 + AluJ/FRAM SINE Alu 225 275 -27 582 314 91 19 chr9 5584634 5584898 -112277729 - MER115 DNA AcHobo -390 303 21 1337 246 87 27 chr9 5584900 5585303 -112277324 - L2 LINE L2 -519 2795 2369 358 345 54 14 chr9 5585472 5585620 -112277007 - MIR SINE MIR -96 166 13 1616 261 183 30 chr9 5586007 5586301 -112276326 + L2 LINE L2 1673 1921 -1393 3291 149 29 23 chr9 5586301 5586856 -112275771 - MER74A LTR ERVL 0 558 1 1616 261 183 30 chr9 5586856 5587304 -112275323 + L2 LINE L2 1921 2529 -785 2571 197 8 126 chr9 5587304 5588177 -112274450 + L1MB7 LINE L1 4481 5250 -896 * 3377 161 7 11 chr9 5588168 5588738 -112273889 + L1MB7 LINE L1 5567 6134 -50 228 187 0 93 chr9 5588745 5588820 -112273807 + L1MA10 LINE L1 6263 6330 -4 27 49 0 0 chr9 5588820 5588861 -112273766 + AT_rich Low_complexity Low_complexity 1 41 0 386 262 91 77 chr9 5588871 5589092 -112273535 + L2 LINE L2 2548 2771 -543 543 264 167 17 chr9 5591438 5591612 -112271015 - MIR SINE MIR -11 251 52 28 29 0 0 chr9 5592163 5592198 -112270429 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr9 5592418 5592440 -112270187 + AT_rich Low_complexity Low_complexity 1 22 0 2103 119 16 7 chr9 5592445 5592748 -112269879 + AluSx SINE Alu 1 306 -6 22 0 0 0 chr9 5592881 5592903 -112269724 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr9 5593021 5593046 -112269581 + AT_rich Low_complexity Low_complexity 1 25 0 2337 84 0 0 chr9 5593146 5593443 -112269184 + AluSg SINE Alu 1 297 -13 25 31 0 0 chr9 5593567 5593599 -112269028 + AT_rich Low_complexity Low_complexity 1 32 0 252 175 53 18 chr9 5593680 5593737 -112268890 - L1ME3A LINE L1 -95 6075 6017 1597 188 10 10 chr9 5593829 5594117 -112268510 - AluJo SINE Alu -24 288 1 252 219 146 57 chr9 5594203 5594326 -112268301 - L1ME3A LINE L1 -268 5853 5720 2699 196 69 13 chr9 5594549 5594670 -112267957 - L1ME1 LINE L1 -187 5979 5866 180 0 0 0 chr9 5594670 5594690 -112267937 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 2699 196 69 13 chr9 5594690 5595200 -112267427 - L1ME1 LINE L1 -300 5866 5458 2186 123 0 3 chr9 5595200 5595509 -112267118 - AluSx SINE Alu -4 308 1 2699 196 69 13 chr9 5595509 5595608 -112267019 - L1ME1 LINE L1 -708 5458 5366 221 58 77 0 chr9 5595616 5595668 -112266959 + (TA)n Simple_repeat Simple_repeat 1 56 0 1836 167 3 13 chr9 5595684 5595984 -112266643 - AluJo SINE Alu -15 297 1 2161 190 40 77 chr9 5595993 5596126 -112266501 - L1ME1 LINE L1 -757 5389 5253 1694 157 25 0 chr9 5596126 5596400 -112266227 - AluSx SINE Alu -23 289 9 2161 190 40 77 chr9 5596400 5596913 -112265714 - L1ME1 LINE L1 -893 5253 4767 671 268 93 0 chr9 5597966 5598160 -112264467 + MIR SINE MIR 49 260 -2 411 224 299 0 chr9 5598209 5598343 -112264284 - MER5A DNA MER1_type -6 183 10 510 277 40 40 chr9 5598394 5598571 -112264056 - MER5B DNA MER1_type -1 177 1 215 308 192 42 chr9 5599890 5600010 -112262617 - L2 LINE L2 -2 3270 3133 581 316 66 20 chr9 5600196 5600440 -112262187 - MIR SINE MIR -6 256 2 233 73 0 24 chr9 5600490 5600531 -112262096 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 985 251 112 27 chr9 5600729 5601103 -112261524 + MER113 DNA MER1_type? 116 521 0 302 304 143 54 chr9 5601103 5601327 -112261300 + MIR SINE MIR 13 256 -6 555 240 85 25 chr9 5601393 5601593 -112261034 + MIR SINE MIR 51 262 0 532 246 41 86 chr9 5602797 5603065 -112259562 - MER112 DNA MER1_type 0 256 1 248 290 0 0 chr9 5603066 5603135 -112259492 - MIR3 SINE MIR -49 159 91 518 308 12 12 chr9 5603546 5603715 -112258912 + MIR SINE MIR 89 257 -5 804 273 144 11 chr9 5604117 5604395 -112258232 + Charlie2 DNA MER1_type 4 318 -2544 2214 210 101 30 chr9 5604407 5604857 -112257770 + Charlie2 DNA MER1_type 1871 2388 -474 3527 39 17 0 chr9 5604857 5605263 -112257364 + L1PA4 LINE L1 5743 6155 0 2214 210 101 30 chr9 5605263 5605503 -112257124 + Charlie2 DNA MER1_type 2388 2610 -252 2521 52 0 10 chr9 5605781 5606091 -112256536 + AluY SINE Alu 1 307 -4 1264 101 48 0 chr9 5606220 5606408 -112256219 - L1MA5A LINE L1 -3 6294 6098 419 265 70 22 chr9 5606412 5606642 -112255985 + Charlie2 DNA MER1_type 2606 2846 -16 12851 165 27 18 chr9 5607231 5610633 -112251994 + L1PB1 LINE L1 2598 6032 -119 2500 69 0 0 chr9 5610635 5610938 -112251689 + AluY SINE Alu 1 303 -8 22 56 0 0 chr9 5611186 5611222 -112251405 + AT_rich Low_complexity Low_complexity 1 36 0 255 308 59 18 chr9 5611312 5611481 -112251146 + L3 LINE CR1 270 445 -1132 1192 266 110 17 chr9 5611512 5611985 -112250642 - LTR33A LTR ERVL -5 518 2 209 285 76 101 chr9 5612008 5612166 -112250461 + L3 LINE CR1 473 626 -951 411 358 55 5 chr9 5612261 5612479 -112250148 + L3 LINE CR1 1044 1272 -305 288 275 290 15 chr9 5612482 5612682 -112249945 - MIR SINE MIR 0 262 8 308 312 7 78 chr9 5612714 5612868 -112249759 + L3 LINE CR1 1326 1468 -109 1157 208 60 18 chr9 5612894 5613230 -112249397 + L1M4 LINE L1 2368 2717 -3429 229 233 50 0 chr9 5614566 5614626 -112248001 - L1ME LINE L1 -536 5585 5523 3360 154 64 43 chr9 5614947 5615032 -112247595 - L1MA7 LINE L1 -1 6290 6208 2327 103 7 3 chr9 5615032 5615342 -112247285 + AluSq SINE Alu 1 311 -2 3360 154 64 43 chr9 5615342 5615976 -112246651 - L1MA7 LINE L1 -83 6208 5556 219 149 0 64 chr9 5616047 5616094 -112246533 + (TG)n Simple_repeat Simple_repeat 2 45 0 439 348 49 18 chr9 5616380 5616604 -112246023 + MIR SINE MIR 32 262 0 1714 236 113 11 chr9 5617009 5617480 -112245147 - LTR33 LTR ERVL -2 519 1 2122 199 44 58 chr9 5617788 5618077 -112244550 - MLT1D LTR MaLR -7 498 217 2235 109 3 0 chr9 5618077 5618370 -112244257 - AluSx SINE Alu -18 294 1 2122 199 44 58 chr9 5618370 5618582 -112244045 - MLT1D LTR MaLR -288 217 4 927 313 67 46 chr9 5619335 5619859 -112242768 - ERVL LTR ERVL -420 5344 4810 892 178 5 49 chr9 5620321 5620506 -112242121 + AluJo SINE Alu 123 299 -13 192 182 0 45 chr9 5621574 5621618 -112241009 + MIR SINE MIR 213 254 -8 591 286 45 15 chr9 5622166 5622365 -112240262 + MIR SINE MIR 13 217 -45 2218 108 0 7 chr9 5622510 5622806 -112239821 + AluSq SINE Alu 1 294 -19 650 261 153 47 chr9 5622878 5623304 -112239323 - MLT1J LTR MaLR -10 501 31 434 323 12 24 chr9 5623821 5623988 -112238639 + MIR3 SINE MIR 37 201 -7 247 298 0 0 chr9 5624555 5624612 -112238015 + polypurine Low_complexity Low_complexity 1 57 0 216 67 0 0 chr9 5624629 5624659 -112237968 + (TGGA)n Simple_repeat Simple_repeat 3 32 0 879 264 65 0 chr9 5624676 5624892 -112237735 + MIR SINE MIR 13 242 -20 257 340 11 0 chr9 5626159 5626253 -112236374 + GA-rich Low_complexity Low_complexity 2 96 0 264 357 37 1 chr9 5626827 5626955 -112235672 + MIR SINE MIR 17 148 -60 357 364 137 25 chr9 5626993 5627431 -112235196 + L2 LINE L2 2564 3055 -217 365 371 0 0 chr9 5628350 5628466 -112234161 + L2 LINE L2 3137 3252 -20 714 173 173 43 chr9 5628510 5628695 -112233932 - MER3 DNA MER1_type 0 209 1 356 270 162 14 chr9 5628697 5628874 -112233753 - MIR SINE MIR -48 214 16 185 143 57 0 chr9 5629073 5629108 -112233519 - MER5C DNA MER1_type 0 324 288 * 278 224 90 0 chr9 5629106 5629173 -112233454 - MER5C DNA MER1_type -249 75 3 3229 102 7 7 chr9 5629584 5630027 -112232600 + L1PB3 LINE L1 5712 6154 0 1989 151 16 6 chr9 5631113 5631430 -112231197 - MLT2C1 LTR ERVL -77 320 1 243 270 17 70 chr9 5632148 5632263 -112230364 + L2 LINE L2 2893 3001 -271 646 246 33 74 chr9 5632305 5632549 -112230078 - MIR SINE MIR -26 236 3 1872 150 10 14 chr9 5632568 5632861 -112229766 - AluJo SINE Alu -20 292 1 23 0 0 0 chr9 5633114 5633137 -112229490 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr9 5633170 5633207 -112229420 + AT_rich Low_complexity Low_complexity 1 37 0 26 64 0 0 chr9 5633288 5633335 -112229292 + AT_rich Low_complexity Low_complexity 1 47 0 1573 248 28 18 chr9 5633713 5634100 -112228527 + MLT1I LTR MaLR 11 401 -8 313 316 70 51 chr9 5634140 5634453 -112228174 + L1ME4a LINE L1 5803 6121 0 362 299 0 0 chr9 5634657 5634744 -112227883 - MIR SINE MIR -95 113 27 279 298 0 12 chr9 5634938 5635022 -112227605 - MIR3 SINE MIR -35 173 91 228 206 0 130 chr9 5635081 5635173 -112227454 - L2 LINE L2 0 3272 3193 2374 130 12 35 chr9 5635607 5635952 -112226675 + MER1B DNA MER1_type 1 337 0 1375 276 106 15 chr9 5636545 5637019 -112225608 - LTR33 LTR ERVL -4 517 1 212 250 0 18 chr9 5638217 5638273 -112224354 + MIR SINE MIR 102 156 -106 585 258 57 5 chr9 5639157 5639356 -112223271 - MIR SINE MIR -2 260 53 5277 55 40 5 chr9 5639471 5640124 -112222503 + L1PA8 LINE L1 5486 6161 -11 228 365 94 10 chr9 5640174 5640270 -112222357 + MIR SINE MIR 28 131 -131 2209 132 0 0 chr9 5640284 5640588 -112222039 + AluSx SINE Alu 1 304 -8 231 61 0 0 chr9 5640604 5640637 -112221990 + (TA)n Simple_repeat Simple_repeat 1 33 0 36 0 0 0 chr9 5640663 5640699 -112221928 + AT_rich Low_complexity Low_complexity 1 36 0 2202 121 0 19 chr9 5640701 5641015 -112221612 + AluSg SINE Alu 1 308 -2 2341 86 3 10 chr9 5641215 5641517 -112221110 - AluSp SINE Alu -13 300 1 2358 87 3 0 chr9 5641818 5642117 -112220510 + AluSp SINE Alu 1 300 -13 398 238 0 10 chr9 5642168 5642269 -112220358 - L1ME LINE L1 -298 5823 5724 1626 230 49 45 chr9 5642291 5642663 -112219964 + LTR33 LTR ERVL 1 377 -144 279 114 0 0 chr9 5642663 5642707 -112219920 + (CA)n Simple_repeat Simple_repeat 2 45 0 1626 230 49 45 chr9 5642707 5642826 -112219801 + LTR33 LTR ERVL 377 494 -27 373 290 20 0 chr9 5642869 5642969 -112219658 - L1ME LINE L1 -461 5660 5559 263 272 29 48 chr9 5643222 5643325 -112219302 + MIR SINE MIR 104 204 -58 1007 156 0 0 chr9 5643574 5643756 -112218871 - AluJb SINE Alu 0 323 142 2193 119 3 0 chr9 5643834 5644136 -112218491 - AluSp SINE Alu -10 303 1 642 235 138 113 chr9 5644596 5645030 -112217597 - MLT1H LTR MaLR 0 549 105 422 324 113 35 chr9 5645442 5645813 -112216814 - ERVL LTR ERVL -5067 697 298 415 249 79 42 chr9 5646259 5646424 -112216203 - LTR50 LTR ERVL -617 178 8 2341 71 0 0 chr9 5646653 5646984 -112215643 - AluY SINE Alu 0 333 3 682 301 160 33 chr9 5647023 5647449 -112215178 - MLT1K LTR MaLR -19 569 90 589 204 84 36 chr9 5647808 5647899 -112214728 - MIR SINE MIR -27 235 150 2560 107 120 5 chr9 5647899 5648283 -112214344 - MSTA LTR MaLR 0 428 1 589 204 84 36 chr9 5648283 5648358 -112214269 - MIR SINE MIR -112 150 61 266 346 58 6 chr9 5648430 5648586 -112214041 + L2 LINE L2 3146 3309 -4 4514 70 23 0 chr9 5649049 5649610 -112213017 + L1PA11 LINE L1 5596 6169 -5 1872 103 20 0 chr9 5651120 5651373 -112211254 + AluSx SINE Alu 34 291 -21 363 262 8 40 chr9 5651389 5651515 -112211112 - MIR SINE MIR -50 212 91 1996 164 0 0 chr9 5651552 5651851 -112210776 + AluJb SINE Alu 1 299 -13 225 283 61 30 chr9 5651886 5651985 -112210642 + L3 LINE CR1 398 499 -1078 828 297 183 73 chr9 5652043 5652161 -112210466 + L3 LINE CR1 647 751 -826 1980 162 0 0 chr9 5652161 5652463 -112210164 + AluJb SINE Alu 8 309 -3 828 297 183 73 chr9 5652463 5652690 -112209937 + L3 LINE CR1 751 952 -625 1931 155 3 3 chr9 5652690 5652987 -112209640 + AluJb SINE Alu 1 297 -15 828 297 183 73 chr9 5652987 5653476 -112209151 + L3 LINE CR1 952 1574 -3 300 261 136 11 chr9 5653483 5653571 -112209056 + MIR3 SINE MIR 99 197 -11 451 270 117 7 chr9 5655112 5655249 -112207378 + MIR SINE MIR 32 183 -79 2079 138 3 0 chr9 5655294 5655592 -112207035 - AluSx SINE Alu -13 299 1 21 71 0 0 chr9 5655973 5656015 -112206612 + AT_rich Low_complexity Low_complexity 1 42 0 213 59 0 29 chr9 5656051 5656085 -112206542 - L2 LINE L2 0 3272 3240 372 318 68 27 chr9 5656817 5657037 -112205590 - MIR SINE MIR -6 256 28 883 241 117 14 chr9 5657653 5657944 -112204683 - MER5C DNA MER1_type -2 322 2 2426 91 3 0 chr9 5657956 5658263 -112204364 - AluSx SINE Alu -4 308 1 192 152 0 0 chr9 5658366 5658399 -112204228 + T-rich Low_complexity Low_complexity 1 33 0 691 79 0 11 chr9 5658686 5658775 -112203852 - AluJb SINE Alu -194 118 31 220 196 0 39 chr9 5659540 5659591 -112203036 + L2 LINE L2 3262 3310 -3 382 225 200 8 chr9 5660121 5660241 -112202386 - MER5A DNA MER1_type 0 189 47 1016 101 51 6 chr9 5660241 5660399 -112202228 + MSTB LTR MaLR 1 165 -261 1750 193 90 69 chr9 5660407 5660916 -112201711 + MER21B LTR ERV1 299 818 -45 968 145 0 0 chr9 5661008 5661139 -112201488 - FLAM_C SINE Alu -2 131 1 1680 151 33 4 chr9 5661952 5662223 -112200404 + AluJb SINE Alu 1 279 -33 1015 198 68 34 chr9 5663246 5663483 -112199144 - MIR SINE MIR 0 262 18 343 298 89 0 chr9 5664100 5664224 -112198403 - MIR3 SINE MIR -4 204 70 291 274 27 0 chr9 5665067 5665140 -112197487 + L2 LINE L2 3184 3258 -14 231 163 20 20 chr9 5665141 5665190 -112197437 + GA-rich Low_complexity Low_complexity 2 50 0 597 262 115 0 chr9 5665804 5665987 -112196640 - MIR SINE MIR -52 210 7 266 236 167 0 chr9 5666156 5666228 -112196399 + MIR SINE MIR 63 146 -116 589 248 35 0 chr9 5666229 5666374 -112196253 + L1MC4a LINE L1 5674 5823 -1985 2352 137 2 68 chr9 5666374 5666798 -112195829 + MER61E LTR ERV1 54 449 -120 479 221 50 61 chr9 5666807 5666988 -112195639 + L1MC4a LINE L1 5812 5990 -1818 1287 265 38 19 chr9 5667057 5667508 -112195119 - LTR33 LTR ERVL -1 520 1 1755 118 49 26 chr9 5667579 5667885 -112194742 + AluSq SINE Alu 1 313 0 2054 97 18 4 chr9 5668224 5668539 -112194088 - AluSx SINE Alu 0 319 1 359 277 161 19 chr9 5668746 5668901 -112193726 - MER5B DNA MER1_type 0 178 2 356 299 90 57 chr9 5668949 5669193 -112193434 + L2 LINE L2 2839 3090 -182 934 284 56 40 chr9 5669312 5669816 -112192811 + L1ME4a LINE L1 5506 6017 -104 506 311 0 8 chr9 5669919 5670041 -112192586 - MER91A DNA MER1_type 0 196 76 409 303 55 0 chr9 5670069 5670214 -112192413 - L1ME3A LINE L1 -230 5940 5788 2201 283 82 39 chr9 5670849 5672568 -112190059 + L1MEc LINE L1 2141 3785 -2430 1850 167 3 10 chr9 5672568 5672896 -112189731 + AluJb SINE Alu 1 312 0 2201 283 82 39 chr9 5672896 5672907 -112189720 + L1MEc LINE L1 3785 3794 -2421 2151 122 0 0 chr9 5672907 5673220 -112189407 + AluSq SINE Alu 1 313 0 2201 283 82 39 chr9 5673220 5673295 -112189332 + L1MEc LINE L1 3794 3982 -2233 1221 266 81 75 chr9 5673315 5673538 -112189089 + L1MEc LINE L1 4136 4356 -1859 2162 107 7 3 chr9 5673538 5673829 -112188798 + AluSp SINE Alu 1 292 -21 1221 266 81 75 chr9 5673829 5673955 -112188672 + L1MEc LINE L1 4356 4480 -1735 2692 106 19 6 chr9 5673955 5674314 -112188313 + THE1B LTR MaLR 1 364 0 1221 266 81 75 chr9 5674314 5675131 -112187496 + L1MEc LINE L1 4480 5311 -904 558 270 92 25 chr9 5675135 5675331 -112187296 + MER63A DNA MER1_type 2 210 0 784 250 72 51 chr9 5675331 5675577 -112187050 + L1MEc LINE L1 5305 5544 -687 835 191 0 22 chr9 5675577 5675713 -112186914 + FLAM_A SINE Alu 1 133 0 784 250 72 51 chr9 5675713 5675970 -112186657 + L1MEc LINE L1 5544 5817 -414 1119 240 193 14 chr9 5675971 5676388 -112186239 - MLT2F LTR ERVL -3 660 93 258 121 172 35 chr9 5676394 5676452 -112186175 - MIR3 SINE MIR -46 162 97 30 69 0 0 chr9 5677279 5677337 -112185290 + AT_rich Low_complexity Low_complexity 1 58 0 32 0 0 0 chr9 5677497 5677529 -112185098 + AT_rich Low_complexity Low_complexity 1 32 0 381 213 12 0 chr9 5677946 5678026 -112184601 - LTR16A LTR ERVL -5 445 365 1989 89 4 0 chr9 5678245 5678502 -112184125 - L1PB1 LINE L1 -1 6150 5893 264 295 11 32 chr9 5679471 5679566 -112183061 - MIR SINE MIR -2 260 168 205 298 0 0 chr9 5679598 5679645 -112182982 - MIR SINE MIR -196 66 20 1537 249 66 10 chr9 5679761 5680155 -112182472 + LTR16C LTR ERVL 76 491 0 2322 102 0 0 chr9 5680656 5680949 -112181678 - AluSg SINE Alu -17 293 1 1787 120 69 4 chr9 5681134 5681410 -112181217 + AluSx SINE Alu 1 294 -18 2050 116 31 7 chr9 5681860 5682152 -112180475 - AluSx SINE Alu -13 299 1 203 86 0 29 chr9 5682758 5682793 -112179834 + (GAAA)n Simple_repeat Simple_repeat 3 36 0 787 219 125 5 chr9 5683226 5683418 -112179209 + MIR SINE MIR 48 262 0 407 304 28 66 chr9 5683923 5684104 -112178523 - MER5A DNA MER1_type -9 180 7 22 0 0 0 chr9 5684196 5684218 -112178409 + AT_rich Low_complexity Low_complexity 1 22 0 4399 117 26 48 chr9 5684683 5685417 -112177210 + L1MB2 LINE L1 5343 6060 -111 26 50 0 0 chr9 5686010 5686050 -112176577 + AT_rich Low_complexity Low_complexity 1 40 0 6131 133 60 34 chr9 5686099 5686709 -112175918 - Tigger3b DNA MER2_type -1797 1231 639 2363 90 0 0 chr9 5686709 5687010 -112175617 - AluSg SINE Alu -9 301 1 2055 123 3 29 chr9 5687012 5687322 -112175305 - AluSx SINE Alu -10 302 1 6131 133 60 34 chr9 5687322 5687464 -112175163 - Tigger3b DNA MER2_type -2389 639 502 1725 158 10 17 chr9 5687464 5687756 -112174871 - AluJo SINE Alu -14 298 9 6131 133 60 34 chr9 5687756 5688130 -112174497 - Tigger3b DNA MER2_type -2526 502 71 881 145 7 7 chr9 5688236 5688381 -112174246 - Tigger1 DNA MER2_type -185 2233 2089 2350 85 0 0 chr9 5688387 5688682 -112173945 - AluSc SINE Alu -14 295 1 1415 133 4 112 chr9 5688682 5688960 -112173667 - Tigger1 DNA MER2_type -864 1554 1307 9176 142 10 23 chr9 5688997 5689792 -112172835 - Tigger1 DNA MER2_type -921 1497 730 1660 174 27 20 chr9 5689792 5690086 -112172541 - AluJo SINE Alu -14 298 3 9176 142 10 23 chr9 5690086 5690753 -112171874 - Tigger1 DNA MER2_type -1688 730 55 1630 176 35 3 chr9 5690886 5691175 -112171452 - AluJb SINE Alu -14 298 1 2215 126 7 0 chr9 5691336 5691646 -112170981 + AluSx SINE Alu 1 312 0 380 253 55 0 chr9 5691797 5691888 -112170739 - Tigger1 DNA MER2_type -2254 164 69 880 104 0 0 chr9 5691890 5692005 -112170622 - AluSg/x SINE Alu -13 299 185 2367 95 3 0 chr9 5692129 5692434 -112170193 + AluSp SINE Alu 1 306 -7 2132 101 10 3 chr9 5693282 5693578 -112169049 - AluSx SINE Alu -14 298 1 23 68 0 0 chr9 5694524 5694568 -112168059 + GC_rich Low_complexity Low_complexity 1 44 0 237 211 0 0 chr9 5696418 5696475 -112166152 + (TA)n Simple_repeat Simple_repeat 1 57 0 1984 62 0 4 chr9 5697144 5697385 -112165242 + AluSc SINE Alu 61 300 -9 4700 163 49 37 chr9 5699254 5700544 -112162083 - L1MA9 LINE L1 -5 7726 6416 396 104 0 0 chr9 5700553 5700620 -112162007 - L1MA3 LINE L1 -1 6304 6238 339 62 44 239 chr9 5700620 5700682 -112161945 - L1MA2 LINE L1 -196 6108 6076 1599 193 44 0 chr9 5700682 5700956 -112161671 - AluJo SINE Alu -26 286 1 339 62 44 239 chr9 5700956 5701006 -112161621 - L1MA2 LINE L1 -228 6076 6018 11554 153 45 70 chr9 5701010 5701286 -112161341 - L1MA9 LINE L1 -1139 6426 6145 1629 181 40 27 chr9 5701286 5701656 -112160971 + THE1C LTR MaLR 1 375 0 11554 153 45 70 chr9 5701656 5701987 -112160640 - L1MA9 LINE L1 -1420 6145 5807 2249 120 3 0 chr9 5701987 5702295 -112160332 - AluSq SINE Alu -4 309 1 11554 153 45 70 chr9 5702295 5702688 -112159939 - L1MA9 LINE L1 -1758 5807 5406 3294 115 33 4 chr9 5702688 5702728 -112159899 - L1MA2 LINE L1 0 6304 6267 1879 161 0 31 chr9 5702728 5703045 -112159582 - AluJb SINE Alu -5 307 1 3294 115 33 4 chr9 5703045 5703550 -112159077 - L1MA2 LINE L1 -37 6267 5743 11554 153 45 70 chr9 5703550 5704592 -112158035 - L1MA9 LINE L1 -2159 5406 4340 1665 187 38 0 chr9 5704592 5704881 -112157746 - AluJb SINE Alu -12 300 1 11554 153 45 70 chr9 5704881 5706770 -112155857 - L1MA9 LINE L1 -3225 4340 2654 2439 64 3 0 chr9 5706770 5707067 -112155560 - AluY SINE Alu -13 298 1 11554 153 45 70 chr9 5707067 5708389 -112154238 - L1MA9 LINE L1 -4911 2654 1301 287 263 184 11 chr9 5708496 5708686 -112153941 + MER113 DNA MER1_type? 5 227 -294 1224 177 0 32 chr9 5708696 5708916 -112153711 + AluJb SINE Alu 3 215 -97 557 202 0 0 chr9 5709099 5709193 -112153434 + AluJb SINE Alu 198 291 -21 362 275 72 18 chr9 5709234 5709401 -112153226 + MER113 DNA MER1_type? 297 472 -49 30 59 0 0 chr9 5709452 5709503 -112153124 + AT_rich Low_complexity Low_complexity 1 51 0 793 242 57 8 chr9 5709788 5710052 -112152575 - L1ME1 LINE L1 -48 6118 5842 920 196 63 1 chr9 5710059 5710263 -112152364 - L1PB4 LINE L1 -2 6164 5948 1240 228 112 36 chr9 5710263 5710774 -112151853 - L1ME1 LINE L1 -339 5827 5320 964 240 65 0 chr9 5710784 5711013 -112151614 - AluJo SINE Alu -66 246 3 373 153 41 31 chr9 5711014 5711112 -112151515 - L1ME1 LINE L1 -821 5325 5227 * 3469 177 39 49 chr9 5711111 5712008 -112150619 - L1MB3 LINE L1 -65 6820 5934 483 200 62 76 chr9 5712014 5712159 -112150468 + Tigger3(Golem) DNA MER2_type 1 143 -2886 * 1375 169 4 11 chr9 5712155 5712415 -112150212 + Tigger3(Golem) DNA MER2_type 2772 3029 0 2946 267 35 16 chr9 5712415 5713568 -112149059 - L1MB3 LINE L1 -920 5928 4727 1960 142 0 37 chr9 5713568 5713613 -112149014 - AluSx SINE Alu 0 312 267 558 43 0 0 chr9 5713613 5713682 -112148945 + (TGG)n Simple_repeat Simple_repeat 2 70 0 1960 142 0 37 chr9 5713682 5713960 -112148667 - AluSx SINE Alu -45 267 1 2946 267 35 16 chr9 5713960 5714100 -112148527 - L1MB3 LINE L1 -2121 4727 4591 2655 135 41 3 chr9 5714093 5714676 -112147951 - L1M1 LINE L1 -541 5762 5164 * 751 164 8 8 chr9 5714699 5714827 -112147800 + AluJb SINE Alu 172 299 -13 433 230 7 30 chr9 5714829 5714964 -112147663 + L1 LINE L1 2764 2895 -3251 7242 216 55 37 chr9 5714965 5717096 -112145531 - L1MB3 LINE L1 -4679 2170 1 6600 162 35 18 chr9 5717095 5717235 -112145392 - L1M1 LINE L1 -1011 5135 4999 * 2213 113 7 13 chr9 5717235 5717544 -112145083 - AluSx SINE Alu -5 307 1 6600 162 35 18 chr9 5717544 5718804 -112143823 - L1M1 LINE L1 -1147 4999 3711 1599 221 14 45 chr9 5718806 5719262 -112143365 - L1M4 LINE L1 -1194 4952 4512 2233 136 0 0 chr9 5719262 5719572 -112143055 - AluSg SINE Alu 0 310 1 1599 221 14 45 chr9 5719572 5719627 -112143000 - L1M4 LINE L1 -1634 4512 4457 1351 153 5 23 chr9 5719680 5719895 -112142732 - AluJb SINE Alu -16 296 86 2101 130 3 13 chr9 5719908 5720224 -112142403 - AluSq SINE Alu 0 313 1 1759 144 26 52 chr9 5720224 5720529 -112142098 - AluSq SINE Alu -15 298 1 2411 220 58 74 chr9 5720559 5720968 -112141659 - L1M4 LINE L1 -1793 4353 3939 2227 117 3 0 chr9 5720968 5721277 -112141350 - AluSq SINE Alu -3 310 1 2411 220 58 74 chr9 5721277 5721542 -112141085 - L1M4 LINE L1 -2207 3939 3695 2347 82 0 13 chr9 5721542 5721846 -112140781 - AluY SINE Alu -11 300 1 2411 220 58 74 chr9 5721846 5722090 -112140537 - L1M4 LINE L1 -2451 3695 3449 452 359 42 9 chr9 5723061 5723278 -112139349 - MIR SINE MIR -5 257 34 2402 235 62 13 chr9 5723415 5724108 -112138519 + Cheshire DNA MER1_type 1 727 -1693 1202 220 33 3 chr9 5724099 5724399 -112138228 + Cheshire DNA MER1_type 940 1248 -1172 * 783 200 29 44 chr9 5724402 5724794 -112137833 + Cheshire DNA MER1_type 1373 2249 -171 959 206 31 182 chr9 5724804 5725522 -112137105 - L1M4 LINE L1 -1222 4924 4316 * 19874 156 21 10 chr9 5725517 5729804 -112132823 - L1PA11 LINE L1 -5 7607 3272 2202 94 7 17 chr9 5729804 5730101 -112132526 + AluSc SINE Alu 1 294 -15 19874 156 21 10 chr9 5730101 5730663 -112131964 - L1PA11 LINE L1 -4340 3272 2718 1073 143 15 0 chr9 5730669 5730865 -112131762 - L1P LINE L1 -3577 2569 2371 * 2297 205 45 30 chr9 5730861 5731926 -112130701 - L1PA11 LINE L1 -3551 4033 983 1537 222 109 2 chr9 5731927 5732479 -112130148 - L1M4 LINE L1 -1804 4840 4195 647 251 66 29 chr9 5732498 5732719 -112129908 - L1M4 LINE L1 -2713 3931 3689 1457 221 10 0 chr9 5732719 5733008 -112129619 + AluJo SINE Alu 1 292 -20 647 251 66 29 chr9 5733008 5733164 -112129463 - L1M4 LINE L1 -2955 3689 3540 1925 151 7 3 chr9 5733181 5733480 -112129147 - AluJo SINE Alu -12 300 1 624 72 10 21 chr9 5733510 5733607 -112129020 - THE1C-int LTR MaLR -1484 96 1 2549 105 13 8 chr9 5733607 5733980 -112128647 - THE1C LTR MaLR 0 375 1 2079 226 94 23 chr9 5733981 5734867 -112127760 - L1M4 LINE L1 -4833 1709 835 2410 74 0 12 chr9 5734886 5735225 -112127402 - L1PB1 LINE L1 -75 6076 5742 2393 122 129 9 chr9 5735283 5735716 -112126911 - MER31A LTR ERV1 0 485 1 21 0 0 0 chr9 5736121 5736142 -112126485 + AT_rich Low_complexity Low_complexity 1 21 0 2210 135 81 60 chr9 5736348 5736844 -112125783 - LTR8A LTR ERV1 0 727 222 1993 127 0 20 chr9 5736922 5737252 -112125375 - AluSx SINE Alu 0 324 1 413 337 96 38 chr9 5738234 5738632 -112123995 + HAL1 LINE L1 1181 1601 -906 371 233 188 0 chr9 5738896 5739029 -112123598 + L1MC4a LINE L1 5299 5456 -708 354 288 122 25 chr9 5739104 5739212 -112123415 + L1MC4a LINE L1 5574 5670 -2138 210 37 0 0 chr9 5739212 5739239 -112123388 + (TA)n Simple_repeat Simple_repeat 2 28 0 354 288 122 25 chr9 5739239 5739457 -112123170 + L1MC4a LINE L1 5670 5932 -1876 327 308 100 0 chr9 5739815 5739945 -112122682 + L1ME4a LINE L1 5979 6121 0 2964 90 33 11 chr9 5740158 5740612 -112122015 + MER4C LTR ERV1 2 465 0 1762 165 138 37 chr9 5740629 5741115 -112121512 - LTR10A LTR ERV1 -61 548 14 1268 92 61 0 chr9 5741580 5741776 -112120851 + LTR8A LTR ERV1 1 208 -519 771 162 0 0 chr9 5741776 5741893 -112120734 - FLAM_C SINE Alu -26 117 1 739 211 12 19 chr9 5742077 5742238 -112120389 - MIR SINE MIR -29 233 74 2332 230 48 11 chr9 5742406 5743067 -112119560 - L1ME1 LINE L1 -192 6043 5358 993 214 70 0 chr9 5743069 5743354 -112119273 - L1ME1 LINE L1 -1191 5024 4720 30478 43 10 5 chr9 5743529 5746492 -112116135 - L1PA4 LINE L1 -3 6152 3203 2860 7 0 0 chr9 5746492 5746802 -112115825 - AluY SINE Alu -1 310 1 30478 43 10 5 chr9 5746802 5749950 -112112677 - L1PA4 LINE L1 -2952 3203 7 243 0 0 0 chr9 5749951 5749978 -112112649 + (C)n Simple_repeat Simple_repeat 1 27 0 4077 230 138 31 chr9 5749980 5750765 -112111862 - L1ME1 LINE L1 -1508 4707 4007 7838 26 0 0 chr9 5750765 5752466 -112110161 + L1PA2 LINE L1 4453 6154 -1 4077 230 138 31 chr9 5752466 5753375 -112109252 - L1ME1 LINE L1 -2208 4007 2833 373 184 23 23 chr9 5753362 5753449 -112109178 - L1ME1 LINE L1 -4472 1924 1838 * 22 0 0 0 chr9 5753468 5753490 -112109137 + AT_rich Low_complexity Low_complexity 1 22 0 469 258 129 41 chr9 5753515 5753903 -112108724 - L1ME1 LINE L1 -5142 1254 833 * 761 268 39 9 chr9 5753895 5754126 -112108501 - L1ME1 LINE L1 -6066 330 93 2459 68 0 10 chr9 5754717 5755027 -112107600 - AluY SINE Alu -4 307 1 197 116 0 23 chr9 5756608 5756651 -112105976 + (TAAAA)n Simple_repeat Simple_repeat 3 44 0 25 31 0 0 chr9 5756665 5756697 -112105930 + AT_rich Low_complexity Low_complexity 1 32 0 331 296 59 30 chr9 5756745 5756914 -112105713 + L1ME4a LINE L1 5743 5916 -205 566 317 95 21 chr9 5757848 5758091 -112104536 + MIR SINE MIR 2 262 0 255 313 104 22 chr9 5758289 5758423 -112104204 + MIR SINE MIR 77 221 -41 735 256 103 0 chr9 5758513 5758716 -112103911 - MIR SINE MIR -38 224 1 450 292 141 48 chr9 5760596 5760908 -112101719 - L2 LINE L2 -42 3271 2931 2283 100 7 0 chr9 5761248 5761547 -112101080 - AluSx SINE Alu -11 301 1 295 65 0 87 chr9 5762381 5762427 -112100200 - L1ME LINE L1 -512 5654 5613 893 281 127 27 chr9 5762430 5763130 -112099497 - L1MEc LINE L1 -5571 825 56 193 267 22 0 chr9 5763465 5763510 -112099117 - L2 LINE L2 -18 3254 3209 197 324 93 86 chr9 5764303 5764442 -112098185 + MIR3 SINE MIR 21 160 -48 1907 177 80 6 chr9 5764823 5765173 -112097454 + MER6A DNA MER2_type 43 418 -187 31 18 0 53 chr9 5766239 5766296 -112096331 + AT_rich Low_complexity Low_complexity 1 54 0 22 70 0 0 chr9 5766491 5766534 -112096093 + AT_rich Low_complexity Low_complexity 1 43 0 1775 123 67 7 chr9 5767005 5767289 -112095338 + AluSx SINE Alu 1 301 -11 1804 98 130 144 chr9 5767955 5768207 -112094420 - MSTA LTR MaLR 0 428 183 1997 110 3 26 chr9 5768207 5768515 -112094112 - AluSx SINE Alu -3 309 9 1804 98 130 144 chr9 5768515 5768692 -112093935 - MSTA LTR MaLR -245 183 5 2123 136 26 6 chr9 5768701 5769046 -112093581 - MSTA-int LTR MaLR -6 1645 1294 9368 210 86 49 chr9 5769053 5769892 -112092735 - L1MB8 LINE L1 -78 6336 5530 1674 186 27 3 chr9 5769892 5770188 -112092439 - AluJo SINE Alu -9 303 1 9368 210 86 49 chr9 5770188 5771855 -112090772 - L1MB8 LINE L1 -884 5530 3927 2013 114 21 4 chr9 5771855 5772135 -112090492 + AluSc SINE Alu 3 287 -22 9368 210 86 49 chr9 5772135 5773332 -112089295 - L1MB8 LINE L1 -2487 3927 2776 246 32 0 0 chr9 5773332 5773363 -112089264 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 9368 210 86 49 chr9 5773363 5773647 -112088980 - L1MB8 LINE L1 -3638 2776 2504 270 56 0 0 chr9 5773647 5773683 -112088944 + (TTG)n Simple_repeat Simple_repeat 1 36 0 9368 210 86 49 chr9 5773683 5774632 -112087995 - L1MB8 LINE L1 -3910 2504 1162 670 286 18 23 chr9 5774751 5774922 -112087705 - MLT1I LTR MaLR -191 218 49 423 344 48 11 chr9 5775078 5775267 -112087360 + MIR SINE MIR 50 245 -17 1208 278 115 35 chr9 5776038 5776916 -112085711 + HAL1 LINE L1 586 1533 -974 281 273 61 18 chr9 5776998 5777163 -112085464 - L1MC5 LINE L1 -188 7773 7602 22 35 0 0 chr9 5777231 5777260 -112085367 + AT_rich Low_complexity Low_complexity 1 29 0 6490 40 0 0 chr9 5777260 5778033 -112084594 - L1PA5 LINE L1 -8 6146 5374 1557 39 20 0 chr9 5778032 5778236 -112084391 + L1PA5 LINE L1 5156 5363 -783 * 236 247 41 0 chr9 5778278 5778351 -112084276 + HAL1 LINE L1 2432 2507 0 23 92 0 0 chr9 5779859 5779924 -112082703 + AT_rich Low_complexity Low_complexity 1 65 0 248 241 96 0 chr9 5780291 5780374 -112082253 + L1MC/D LINE L1 5801 5891 -1917 187 272 136 0 chr9 5781046 5781127 -112081500 + MIR3 SINE MIR 89 180 -28 294 73 0 0 chr9 5781459 5781500 -112081127 + (TCCCC)n Simple_repeat Simple_repeat 5 45 0 1499 139 20 90 chr9 5781520 5781821 -112080806 - AluJb SINE Alu -32 280 1 2067 111 14 24 chr9 5782002 5782299 -112080328 + AluSg SINE Alu 1 294 -16 691 164 16 8 chr9 5782524 5782646 -112079981 - FLAM_A SINE Alu -10 123 1 324 275 84 35 chr9 5782697 5782979 -112079648 - L1MEc LINE L1 -4933 1659 1344 3311 105 91 36 chr9 5783113 5783239 -112079388 - LTR24C LTR ERV1 0 635 517 2009 123 27 0 chr9 5783239 5783531 -112079096 + AluSx SINE Alu 1 300 -12 2440 84 3 0 chr9 5783535 5783843 -112078784 + AluSx SINE Alu 1 309 -3 3311 105 91 36 chr9 5783843 5784313 -112078314 - LTR24C LTR ERV1 -120 515 1 21 36 0 0 chr9 5784388 5784416 -112078211 + AT_rich Low_complexity Low_complexity 1 28 0 200 259 61 61 chr9 5784774 5784921 -112077706 + L2 LINE L2 1964 2110 -1204 227 279 76 0 chr9 5784946 5785025 -112077602 - L2 LINE L2 -13 3300 3216 355 308 51 8 chr9 5785103 5785220 -112077407 + L2 LINE L2 3150 3271 -1 878 208 31 16 chr9 5785270 5785462 -112077165 - MER3 DNA MER1_type -8 201 7 812 292 78 25 chr9 5786618 5786932 -112075695 - HAL1 LINE L1 -76 2431 2080 1659 136 65 127 chr9 5786932 5787381 -112075246 - MER61B LTR ERV1 -4 421 1 812 292 78 25 chr9 5787381 5787555 -112075072 - HAL1 LINE L1 -427 2080 1917 2238 107 3 0 chr9 5787556 5787864 -112074763 - AluSp SINE Alu -4 309 1 21 0 0 0 chr9 5787932 5787953 -112074674 + AT_rich Low_complexity Low_complexity 1 21 0 306 0 0 0 chr9 5788025 5788059 -112074568 + (TG)n Simple_repeat Simple_repeat 2 35 0 39832 73 8 3 chr9 5788239 5794352 -112068275 - L1PA5 LINE L1 -8 6146 3 492 259 54 7 chr9 5794353 5794500 -112068127 - HAL1 LINE L1 -585 1922 1769 850 316 103 58 chr9 5794558 5795334 -112067293 - HAL1 LINE L1 -1693 814 4 21 0 0 0 chr9 5795936 5795957 -112066670 + AT_rich Low_complexity Low_complexity 1 21 0 433 215 69 15 chr9 5796051 5796181 -112066446 + L1ME3A LINE L1 5810 5946 -224 793 308 58 29 chr9 5796473 5796954 -112065673 + L2 LINE L2 2753 3313 0 437 289 234 15 chr9 5797383 5797584 -112065043 - MIR SINE MIR -13 249 5 209 356 0 14 chr9 5797680 5797753 -112064874 - L2 LINE L2 -50 3263 3192 286 287 130 9 chr9 5798630 5798738 -112063889 - L2 LINE L2 -2 3311 3191 2196 67 17 17 chr9 5798940 5799239 -112063388 - AluY SINE Alu -12 299 1 401 206 130 54 chr9 5799417 5799695 -112062932 - L1 LINE L1 -2365 3781 3465 286 98 61 0 chr9 5799696 5799778 -112062849 + (TA)n Simple_repeat Simple_repeat 2 88 0 2071 126 10 0 chr9 5799778 5800080 -112062547 - AluSg SINE Alu -5 305 1 279 291 45 8 chr9 5800090 5800224 -112062403 - L1 LINE L1 -2672 3474 3336 326 170 113 70 chr9 5800404 5800555 -112062072 - L1ME3 LINE L1 -287 5875 5733 422 310 55 30 chr9 5800559 5800888 -112061739 - L1MC4 LINE L1 -214 7828 7492 349 302 189 0 chr9 5801467 5801636 -112060991 - L1MC4 LINE L1 -546 7496 7296 888 257 81 40 chr9 5801958 5802328 -112060299 + L1MEc LINE L1 43 427 -5969 * 957 166 90 18 chr9 5802326 5802549 -112060078 + L1MEc LINE L1 996 1234 -5162 21 36 0 0 chr9 5803024 5803052 -112059575 + AT_rich Low_complexity Low_complexity 1 28 0 2242 141 49 33 chr9 5803303 5803728 -112058899 - Tigger2a DNA MER2_type -2 432 1 576 229 70 84 chr9 5803741 5804076 -112058551 - L1ME3A LINE L1 -333 5837 5514 189 0 0 0 chr9 5804222 5804243 -112058384 + (T)n Simple_repeat Simple_repeat 1 21 0 13668 68 15 6 chr9 5804329 5806095 -112056532 - HERVL-A1 LTR ERVL -3872 1782 1 3427 51 13 27 chr9 5806095 5806545 -112056082 - MLT2A1 LTR ERVL 0 444 1 1021 286 113 43 chr9 5806731 5807936 -112054691 - L1MEd LINE L1 -4656 1473 269 230 309 114 65 chr9 5808875 5808998 -112053629 - L2 LINE L2 -6 3307 3179 1102 145 56 23 chr9 5809484 5809698 -112052929 - AluJo SINE Alu -11 301 81 1783 139 100 9 chr9 5810113 5810444 -112052183 - MER46B DNA MER2_type 0 236 1 428 353 42 32 chr9 5811003 5811193 -112051434 - MIR3 SINE MIR -2 206 15 24 0 0 0 chr9 5811891 5811915 -112050712 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr9 5811998 5812022 -112050605 + AT_rich Low_complexity Low_complexity 1 24 0 336 290 48 0 chr9 5812151 5812275 -112050352 + MER103 DNA DNA 34 163 -3 182 216 0 0 chr9 5814438 5814475 -112048152 + MIR3 SINE MIR 172 208 0 517 196 45 15 chr9 5814694 5814827 -112047800 - MIR3 SINE MIR -5 203 67 2500 74 6 3 chr9 5815441 5815753 -112046874 - AluSq SINE Alu 0 313 1 2109 103 4 0 chr9 5817050 5817331 -112045296 - AluSx SINE Alu -30 282 1 2169 113 17 0 chr9 5818111 5818412 -112044215 - AluSq SINE Alu -7 306 1 195 304 54 0 chr9 5819096 5819152 -112043475 - L2 LINE L2 -4 3268 3210 210 118 0 0 chr9 5819690 5819724 -112042903 + (TG)n Simple_repeat Simple_repeat 2 35 0 383 352 93 10 chr9 5819754 5819947 -112042680 - MIR SINE MIR -6 256 48 21 0 0 0 chr9 5820020 5820041 -112042586 + AT_rich Low_complexity Low_complexity 1 21 0 1901 121 10 17 chr9 5820121 5820411 -112042216 + AluSx SINE Alu 1 288 -24 28 0 0 0 chr9 5820488 5820516 -112042111 + AT_rich Low_complexity Low_complexity 1 28 0 1762 148 93 3 chr9 5820940 5821251 -112041376 - MER44D DNA MER2_type 0 609 1 2106 117 0 0 chr9 5821317 5821631 -112040996 + AluSx SINE Alu 1 314 0 217 372 64 11 chr9 5823200 5823294 -112039333 - L2 LINE L2 -4 3268 3170 448 372 202 2 chr9 5823396 5823818 -112038809 - L2 LINE L2 -209 3063 2550 410 250 44 127 chr9 5824145 5824406 -112038221 - L3 LINE CR1 -202 1375 1143 2358 96 0 13 chr9 5824406 5824719 -112037908 - AluSc SINE Alu 0 309 1 410 250 44 127 chr9 5824719 5824773 -112037854 - L3 LINE CR1 -434 1143 1086 306 305 130 37 chr9 5824918 5825164 -112037463 + L1MC4 LINE L1 7381 7649 -393 228 171 0 0 chr9 5825177 5825212 -112037415 - tRNA-Val-GTG tRNA tRNA -39 37 3 565 234 94 61 chr9 5825225 5825588 -112037039 + L1MC5 LINE L1 7551 7925 -36 205 211 0 0 chr9 5825635 5825673 -112036954 + L3 LINE CR1 1081 1118 -459 208 313 116 36 chr9 5825803 5825915 -112036712 + L3 LINE CR1 1384 1504 -73 2427 84 0 7 chr9 5826781 5827090 -112035537 - AluSg SINE Alu -3 307 1 21 36 0 0 chr9 5827177 5827205 -112035422 + AT_rich Low_complexity Low_complexity 1 28 0 282 296 112 18 chr9 5827225 5827394 -112035233 + L2 LINE L2 2356 2540 -774 206 218 18 36 chr9 5828062 5828117 -112034510 + L2 LINE L2 3242 3295 -18 380 300 140 0 chr9 5830756 5830906 -112031721 + MIR SINE MIR 86 256 -6 1993 134 3 0 chr9 5831733 5832017 -112030610 - AluSx SINE Alu -27 285 1 4593 111 22 4 chr9 5832030 5832745 -112029882 - L1PB1 LINE L1 -2 6149 5422 203 226 0 19 chr9 5833200 5833253 -112029374 + MIR SINE MIR 210 261 -1 2358 84 3 0 chr9 5833267 5833563 -112029064 - AluSp SINE Alu -16 297 1 745 253 107 9 chr9 5833576 5833801 -112028826 - MIR SINE MIR -14 248 2 1734 157 7 20 chr9 5833925 5834218 -112028409 + AluJo SINE Alu 6 294 -18 1334 142 6 120 chr9 5836164 5836523 -112026104 + Cheshire DNA MER1_type 2103 2420 0 2158 206 113 20 chr9 5836744 5837401 -112025226 - L1MB1 LINE L1 -28 6161 5444 1203 221 124 53 chr9 5837433 5838053 -112024574 - L1MC5 LINE L1 -52 7909 7246 34 0 0 0 chr9 5838851 5838885 -112023742 + AT_rich Low_complexity Low_complexity 1 34 0 319 356 27 20 chr9 5839188 5839337 -112023290 + MIR3 SINE MIR 38 187 -21 25 0 0 0 chr9 5842336 5842361 -112020266 + AT_rich Low_complexity Low_complexity 1 25 0 629 197 164 20 chr9 5842606 5842966 -112019661 - L1MB7 LINE L1 -217 5967 5188 3671 206 154 29 chr9 5843175 5844376 -112018251 - L1MB7 LINE L1 -944 5202 3834 1639 200 7 0 chr9 5844376 5844666 -112017961 - AluJb SINE Alu -20 292 1 3671 206 154 29 chr9 5844666 5844723 -112017904 - L1MB7 LINE L1 -2312 3834 3786 11981 122 31 128 chr9 5844883 5847728 -112014899 + L1PA7 LINE L1 12 2579 -3567 8225 70 15 4 chr9 5847720 5849636 -112012991 + L1PA7 LINE L1 4212 6150 -4 * 229 308 162 0 chr9 5853462 5853579 -112009048 + MIR SINE MIR 20 155 -107 419 293 74 36 chr9 5854732 5855207 -112007420 + HAL1b LINE L1 153 645 -703 437 202 48 0 chr9 5855231 5855315 -112007312 - AluJb SINE Alu -22 290 203 226 171 0 0 chr9 5855342 5855383 -112007244 - Alu SINE Alu -33 269 229 1379 186 27 4 chr9 5855391 5855654 -112006973 - AluJo SINE Alu -43 269 1 829 98 0 0 chr9 5855846 5855958 -112006669 - AluSg/x SINE Alu -2 310 199 498 329 69 23 chr9 5856005 5856514 -112006113 + L1MDa LINE L1 2417 2953 -3587 582 176 30 30 chr9 5856533 5856664 -112005963 + L1ME2 LINE L1 6021 6151 -13 216 67 0 0 chr9 5856848 5856878 -112005749 + (GA)n Simple_repeat Simple_repeat 2 31 0 1740 174 46 17 chr9 5856883 5857234 -112005393 - MLT2D LTR ERVL -53 361 1 262 312 136 30 chr9 5857441 5857640 -112004987 - L2 LINE L2 -8 3305 3086 518 198 236 0 chr9 5858384 5858566 -112004061 + L1MCa LINE L1 2099 2323 -4103 * 7872 211 48 26 chr9 5858557 5861174 -112001453 + L1MC2 LINE L1 1840 4540 -1886 2362 95 7 0 chr9 5861174 5861480 -112001147 + AluSg SINE Alu 1 308 -2 7872 211 48 26 chr9 5861480 5862050 -112000577 + L1MC2 LINE L1 4540 5096 -1330 2431 169 122 19 chr9 5862038 5862724 -111999903 + L1MC2 LINE L1 5849 6610 -14 * 1507 151 77 49 chr9 5862724 5863009 -111999618 - AluJo SINE Alu -19 293 1 2431 169 122 19 chr9 5863009 5863021 -111999606 + L1MC2 LINE L1 6610 6619 -5 2454 84 0 0 chr9 5863044 5863343 -111999284 + AluSg SINE Alu 1 299 -11 2347 80 3 0 chr9 5863893 5864192 -111998435 - AluSp SINE Alu -13 300 1 717 243 109 0 chr9 5865230 5865432 -111997195 + MER58A DNA MER1_type 1 224 0 2208 116 0 3 chr9 5866069 5866370 -111996257 + AluSx SINE Alu 1 300 -12 2094 137 0 3 chr9 5868062 5868361 -111994266 - AluSx SINE Alu -13 299 2 769 119 0 0 chr9 5868602 5868738 -111993889 + AluSg/x SINE Alu 176 311 0 1785 161 0 39 chr9 5872105 5872416 -111990211 - AluJb SINE Alu -13 299 1 2177 128 0 0 chr9 5873140 5873444 -111989183 + AluSx SINE Alu 1 304 -8 735 148 17 9 chr9 5873682 5873797 -111988830 - FLAM_C SINE Alu -25 118 3 1696 137 76 4 chr9 5874413 5874695 -111987932 - AluJb SINE Alu 0 301 1 2378 48 10 0 chr9 5874706 5874996 -111987631 - AluY SINE Alu -18 293 1 517 265 53 20 chr9 5875229 5875380 -111987247 - L2 LINE L2 0 3313 3158 25 0 0 0 chr9 5876632 5876657 -111985970 + AT_rich Low_complexity Low_complexity 1 25 0 198 171 0 0 chr9 5877008 5877049 -111985578 + A-rich Low_complexity Low_complexity 1 41 0 296 304 78 48 chr9 5877159 5877389 -111985238 + L2 LINE L2 1739 1975 -1339 273 280 160 10 chr9 5877352 5877452 -111985175 - L2 LINE L2 -3 3269 3155 * 247 246 90 0 chr9 5879061 5879129 -111983498 - L1ME LINE L1 -213 5908 5848 1397 140 35 0 chr9 5879129 5879357 -111983270 - MER46A DNA MER2_type 0 236 1 247 246 90 0 chr9 5879357 5879410 -111983217 - L1ME LINE L1 -273 5848 5776 23 33 0 0 chr9 5879423 5879453 -111983174 + AT_rich Low_complexity Low_complexity 1 30 0 226 240 13 0 chr9 5879526 5879601 -111983026 + (TA)n Simple_repeat Simple_repeat 1 76 0 599 290 34 65 chr9 5879712 5880036 -111982591 + MLT1I LTR MaLR 93 406 -3 1881 132 44 14 chr9 5880137 5880432 -111982195 + AluSx SINE Alu 1 304 -8 302 234 0 0 chr9 5880457 5880534 -111982093 + L1MCc LINE L1 1386 1462 -4961 301 273 47 53 chr9 5880555 5880705 -111981922 + L1MCc LINE L1 1675 1823 -5108 288 306 16 15 chr9 5880732 5880885 -111981742 + L1MCc LINE L1 1816 2069 -4862 1763 219 91 34 chr9 5880907 5881532 -111981095 + L1MC4 LINE L1 6785 7445 -597 23 78 0 0 chr9 5881590 5881641 -111980986 + AT_rich Low_complexity Low_complexity 1 51 0 332 258 126 0 chr9 5881858 5882025 -111980602 + L1MC4 LINE L1 7634 7821 -221 413 218 78 62 chr9 5882042 5882221 -111980406 - L1M4 LINE L1 -2243 3903 3722 646 235 143 0 chr9 5882242 5882459 -111980168 + L1ME4a LINE L1 5585 5832 -338 268 328 9 69 chr9 5882459 5882575 -111980052 - MIR SINE MIR -130 132 24 2335 90 0 0 chr9 5882575 5882874 -111979753 - AluY SINE Alu -12 299 1 2385 72 0 7 chr9 5882874 5883166 -111979461 - AluSx SINE Alu -22 290 1 376 221 127 70 chr9 5883538 5883696 -111978931 - L2 LINE L2 -1317 1997 1831 622 179 19 0 chr9 5883744 5883850 -111978777 + FRAM SINE Alu 53 160 -16 565 265 99 0 chr9 5883856 5884037 -111978590 - L2 LINE L2 -1502 1812 1614 1882 179 10 0 chr9 5884110 5884417 -111978210 + AluJo SINE Alu 1 310 -2 374 288 167 1 chr9 5884441 5884620 -111978007 - L1MC/D LINE L1 -460 5661 5459 2220 189 42 14 chr9 5884681 5884956 -111977671 + L1MB8 LINE L1 5577 5874 -304 2490 126 22 38 chr9 5884956 5885408 -111977219 + MER65A LTR ERV1 1 445 0 2220 189 42 14 chr9 5885408 5885629 -111976998 + L1MB8 LINE L1 5874 6087 -91 2141 110 3 0 chr9 5885694 5885985 -111976642 + AluSx SINE Alu 1 292 -20 262 238 10 50 chr9 5886043 5886144 -111976483 + L1ME4a LINE L1 5936 6032 -89 1825 172 7 0 chr9 5887647 5887943 -111974684 + AluJb SINE Alu 1 298 -14 1153 29 0 7 chr9 5888484 5888624 -111974003 + MER85 DNA T2_type 1 139 0 1692 169 37 10 chr9 5888678 5888974 -111973653 + AluJb SINE Alu 1 304 -8 1001 237 47 0 chr9 5889163 5889395 -111973232 + MIR SINE MIR 12 254 -8 811 137 0 0 chr9 5889967 5890084 -111972543 + AluJo/FLAM SINE Alu 1 117 -185 283 159 111 0 chr9 5890084 5890147 -111972480 - AluSp/q SINE Alu -2 301 232 575 232 103 13 chr9 5890925 5891149 -111971478 + L1ME4a LINE L1 5625 5868 -253 1614 197 13 7 chr9 5891158 5891467 -111971160 + AluJo SINE Alu 1 311 -1 228 297 45 45 chr9 5892172 5892283 -111970344 + MIR3 SINE MIR 6 116 -92 695 297 25 8 chr9 5892396 5892487 -111970140 - MIR SINE MIR -21 241 153 234 0 0 0 chr9 5892487 5892513 -111970114 + (CAT)n Simple_repeat Simple_repeat 2 27 0 695 297 25 8 chr9 5892513 5892657 -111969970 - MIR SINE MIR -109 153 2 1735 172 39 4 chr9 5893074 5893353 -111969274 - AluJb SINE Alu -23 289 1 341 247 0 0 chr9 5893369 5893450 -111969177 - MIR SINE MIR -108 154 74 237 269 100 41 chr9 5894242 5894380 -111968247 - L1ME4a LINE L1 -11 6110 5982 194 62 31 0 chr9 5894380 5894412 -111968215 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 2255 91 3 19 chr9 5894419 5894726 -111967901 - AluSx SINE Alu -10 302 1 2306 63 0 7 chr9 5894735 5895052 -111967575 - AluY SINE Alu 0 315 1 237 269 100 41 chr9 5895052 5895214 -111967413 - L1ME4a LINE L1 -151 5970 5772 305 215 28 65 chr9 5896047 5896154 -111966473 + L1P5 LINE L1 5366 5468 -686 724 195 16 0 chr9 5897742 5897870 -111964757 - FLAM_A SINE Alu -3 130 1 25 0 0 0 chr9 5898007 5898032 -111964595 + AT_rich Low_complexity Low_complexity 1 25 0 387 239 46 15 chr9 5898084 5898214 -111964413 + L1ME4a LINE L1 5119 5252 -894 1339 155 76 55 chr9 5898412 5898703 -111963924 + AluSx SINE Alu 3 299 -13 552 280 100 47 chr9 5898750 5898845 -111963782 + L1ME4a LINE L1 5518 5607 -514 1771 158 47 10 chr9 5898845 5899143 -111963484 + AluJo SINE Alu 1 309 -3 552 280 100 47 chr9 5899143 5899408 -111963219 + L1ME4a LINE L1 5607 5897 -224 890 100 21 14 chr9 5899912 5900052 -111962575 + AluSg/x SINE Alu 170 310 -2 1715 211 88 25 chr9 5900091 5900622 -111962005 + L1MC2 LINE L1 4252 4816 -1330 * 2657 178 151 16 chr9 5900610 5901299 -111961328 + L1MC2 LINE L1 5569 6336 -8 1476 151 79 50 chr9 5901302 5901581 -111961046 - AluJo SINE Alu -25 287 1 2262 102 3 0 chr9 5901616 5901910 -111960717 + AluSg SINE Alu 1 295 -15 183 42 0 0 chr9 5901913 5901937 -111960690 + (TAAAAA)n Simple_repeat Simple_repeat 4 27 0 1833 202 161 2 chr9 5902418 5902854 -111959773 - MLT1D LTR MaLR 0 505 1 394 294 16 8 chr9 5902864 5902990 -111959637 + MIR SINE MIR 53 179 -83 2445 79 0 0 chr9 5903013 5903318 -111959309 - AluY SINE Alu 0 311 7 409 246 0 101 chr9 5903796 5903934 -111958693 - MIR3 SINE MIR -2 206 83 2183 121 3 3 chr9 5903965 5904263 -111958364 + AluSx SINE Alu 1 298 -14 1578 101 0 0 chr9 5904265 5904463 -111958164 + AluSq SINE Alu 1 198 -115 383 127 0 16 chr9 5904464 5904527 -111958100 + AluSq SINE Alu 240 301 -1 374 193 48 0 chr9 5904528 5904611 -111958016 + L1MCa LINE L1 1578 1664 -4762 * 5849 167 49 66 chr9 5904608 5905937 -111956690 + L1MCa LINE L1 17 1322 -5104 1174 150 9 44 chr9 5905937 5906163 -111956464 + AluSx SINE Alu 1 218 -94 1829 151 21 3 chr9 5907583 5907868 -111954759 + AluSx SINE Alu 1 290 -22 532 220 83 64 chr9 5908298 5908516 -111954111 + MER34 LTR ERV1 295 516 -26 601 268 56 6 chr9 5908531 5908710 -111953917 + MER5A DNA MER1_type 1 188 -1 1685 171 7 52 chr9 5909919 5910228 -111952399 + AluJo SINE Alu 1 295 -17 1892 148 0 33 chr9 5910234 5910519 -111952108 + AluJo SINE Alu 1 277 -35 186 71 0 0 chr9 5910519 5910547 -111952080 + (CATA)n Simple_repeat Simple_repeat 2 29 0 1892 148 0 33 chr9 5910547 5910564 -111952063 + AluJo SINE Alu 277 293 -19 216 0 0 0 chr9 5910824 5910848 -111951779 + (A)n Simple_repeat Simple_repeat 1 24 0 450 0 0 0 chr9 5911345 5911395 -111951232 + (CA)n Simple_repeat Simple_repeat 2 51 0 1052 216 65 8 chr9 5911475 5911720 -111950907 - MSTD LTR MaLR 0 396 138 937 157 187 57 chr9 5911723 5911953 -111950674 + AluJo SINE Alu 40 299 -13 23 0 0 0 chr9 5912356 5912379 -111950248 + AT_rich Low_complexity Low_complexity 1 23 0 1669 159 0 34 chr9 5912896 5913192 -111949435 - AluJo SINE Alu 0 312 27 21 36 0 0 chr9 5913231 5913259 -111949368 + AT_rich Low_complexity Low_complexity 1 28 0 2359 103 3 3 chr9 5913812 5914123 -111948504 - AluSx SINE Alu -1 311 1 1420 194 7 4 chr9 5914123 5914385 -111948242 - L1MB5 LINE L1 -111 6063 5798 22 0 0 0 chr9 5914394 5914416 -111948211 + AT_rich Low_complexity Low_complexity 1 22 0 216 314 29 0 chr9 5914898 5914968 -111947659 - MIR SINE MIR -111 151 80 382 265 43 8 chr9 5915873 5915990 -111946637 + L2 LINE L2 3188 3308 -5 716 208 136 61 chr9 5916452 5916746 -111945881 + L1MC5 LINE L1 7621 7936 -25 1222 106 116 10 chr9 5917757 5917964 -111944663 + MER30 DNA MER1_type 1 229 -1 517 92 23 2 chr9 5918080 5918298 -111944329 + AluY SINE Alu 1 262 -49 1346 90 22 0 chr9 5918300 5918478 -111944149 + AluY SINE Alu 100 281 -30 231 114 0 0 chr9 5918478 5918513 -111944114 + (TGAA)n Simple_repeat Simple_repeat 4 38 0 667 191 38 23 chr9 5918523 5918654 -111943973 + AluJo SINE Alu 2 134 -178 2728 175 41 15 chr9 5918766 5919308 -111943319 + MER34B LTR ERV1 10 565 0 1561 134 119 32 chr9 5919462 5919739 -111942888 + AluSx SINE Alu 1 301 -11 419 205 139 0 chr9 5919991 5920142 -111942485 - MIR SINE MIR -2 260 89 203 368 0 0 chr9 5920267 5920335 -111942292 + L3 LINE CR1 1502 1569 -8 22 0 0 0 chr9 5920399 5920421 -111942206 + AT_rich Low_complexity Low_complexity 1 22 0 1218 64 146 0 chr9 5920630 5920801 -111941826 - MER30 DNA MER1_type -34 196 1 186 103 0 0 chr9 5921419 5921448 -111941179 + (CCG)n Simple_repeat Simple_repeat 3 31 0 184 244 47 58 chr9 5921849 5921935 -111940692 - MIR SINE MIR -54 208 124 266 324 29 15 chr9 5921935 5922071 -111940556 - MIR SINE MIR 0 262 125 748 315 91 37 chr9 5922379 5922863 -111939764 + L2 LINE L2 2758 3271 -1 275 247 0 108 chr9 5922928 5923021 -111939606 + L2 LINE L2 3155 3237 -35 426 85 0 0 chr9 5923032 5923091 -111939536 + (TG)n Simple_repeat Simple_repeat 2 60 0 242 56 28 0 chr9 5923283 5923319 -111939308 + (TAGA)n Simple_repeat Simple_repeat 1 37 0 * 432 0 0 0 chr9 5923318 5923366 -111939261 + (TG)n Simple_repeat Simple_repeat 1 48 0 670 267 88 44 chr9 5923570 5923866 -111938761 - L2 LINE L2 -9 3304 2996 254 355 41 8 chr9 5923979 5924100 -111938527 - L2 LINE L2 -10 3262 3138 197 33 33 0 chr9 5924857 5924887 -111937740 + (TGGA)n Simple_repeat Simple_repeat 1 31 0 216 339 125 16 chr9 5924984 5925176 -111937451 - MIR SINE MIR -29 233 21 250 287 9 43 chr9 5925389 5925504 -111937123 - MIR SINE MIR -72 190 80 315 278 70 17 chr9 5925595 5925710 -111936917 + MER117 DNA MER1_type 75 195 -2 228 171 0 0 chr9 5925830 5925871 -111936756 - L2 LINE L2 -19 3253 3213 1573 172 62 28 chr9 5926059 5926349 -111936278 + AluJo SINE Alu 1 300 -12 181 339 68 0 chr9 5926420 5926479 -111936148 + L2 LINE L2 3157 3219 -53 1735 137 69 7 chr9 5926730 5927036 -111935591 + MER65A LTR ERV1 1 325 -120 3251 32 0 0 chr9 5927036 5927500 -111935127 + L1PA5 LINE L1 5576 6153 -1 790 114 38 15 chr9 5927507 5927639 -111934988 + MER65A LTR ERV1 309 443 -2 1785 166 6 25 chr9 5927783 5928097 -111934530 - AluJo SINE Alu 0 312 5 237 151 94 19 chr9 5928179 5928232 -111934395 + LTR67 LTR ERVL 501 557 0 190 250 125 73 chr9 5928284 5928380 -111934247 - MIR SINE MIR -109 153 53 2239 89 24 7 chr9 5929711 5930002 -111932625 - AluSp SINE Alu -17 296 1 512 187 93 22 chr9 5930002 5930141 -111932486 - MIR SINE MIR -60 202 54 459 252 107 39 chr9 5930734 5930940 -111931687 - MIR SINE MIR -24 238 19 1988 134 0 0 chr9 5931306 5931581 -111931046 + AluSx SINE Alu 1 275 -37 335 304 51 22 chr9 5932111 5932249 -111930378 + L2 LINE L2 2921 3062 -251 187 143 0 0 chr9 5932423 5932451 -111930176 - L3 LINE CR1 -27 1550 1523 9065 108 14 9 chr9 5932626 5933834 -111928793 + HSMAR1 DNA Mariner 1 1218 -69 2371 86 0 3 chr9 5933834 5934126 -111928501 + AluSc SINE Alu 1 291 -18 9065 108 14 9 chr9 5934126 5934197 -111928430 + HSMAR1 DNA Mariner 1218 1287 0 581 159 0 28 chr9 5934700 5934807 -111927820 + U13 snRNA snRNA 1 104 0 590 97 0 174 chr9 5934817 5934972 -111927655 + MER53 DNA DNA 43 170 -19 524 62 0 0 chr9 5935109 5935174 -111927453 - HSMAR1 DNA Mariner 0 1287 1223 305 271 225 7 chr9 5938294 5938445 -111924182 - MLT1J LTR MaLR -158 353 170 353 275 169 7 chr9 5938479 5938621 -111924006 - MIR SINE MIR -90 172 8 853 247 155 43 chr9 5938825 5939453 -111923174 - LTR50 LTR ERVL -8 787 3 22 0 0 0 chr9 5939934 5939956 -111922671 + AT_rich Low_complexity Low_complexity 1 22 0 432 326 17 6 chr9 5940156 5940334 -111922293 - MER5A DNA MER1_type -1 188 9 191 254 113 14 chr9 5940591 5940662 -111921965 + MIR3 SINE MIR 6 83 -125 435 286 119 5 chr9 5940685 5940870 -111921757 + MIR SINE MIR 56 261 -1 251 337 11 0 chr9 5940890 5940982 -111921645 + MIR3 SINE MIR 108 200 -8 492 283 73 34 chr9 5941491 5941724 -111920903 + MIR SINE MIR 21 262 0 1961 167 32 47 chr9 5942412 5942609 -111920018 - MSTD LTR MaLR 0 396 207 1571 127 69 33 chr9 5942609 5942885 -111919742 - AluJb SINE Alu -15 297 12 1961 167 32 47 chr9 5942885 5943089 -111919538 - MSTD LTR MaLR -189 207 1 318 247 55 0 chr9 5944313 5944386 -111918241 + L2 LINE L2 3173 3249 -23 30 27 0 0 chr9 5944915 5944952 -111917675 + AT_rich Low_complexity Low_complexity 1 37 0 6188 180 45 91 chr9 5945715 5946066 -111916561 - L1MCa LINE L1 -1939 4487 4122 2067 144 0 10 chr9 5946066 5946372 -111916255 - AluJb SINE Alu -9 303 1 6188 180 45 91 chr9 5946372 5947000 -111915627 - L1MCa LINE L1 -2304 4122 3467 1558 154 0 126 chr9 5947000 5947357 -111915270 - AluJo SINE Alu 0 312 1 6188 180 45 91 chr9 5947357 5948414 -111914213 - L1MCa LINE L1 -2959 3467 2363 2230 112 0 3 chr9 5948414 5948709 -111913918 - AluSx SINE Alu -18 294 1 6188 180 45 91 chr9 5948709 5949025 -111913602 - L1MCa LINE L1 -4063 2363 2034 2080 110 28 14 chr9 5949025 5949315 -111913312 - AluSx SINE Alu -18 294 1 2321 104 0 0 chr9 5949324 5949623 -111913004 - AluY SINE Alu -12 299 1 6188 180 45 91 chr9 5949623 5949767 -111912860 - L1MCa LINE L1 -4178 2248 2099 1531 166 55 7 chr9 5949767 5950056 -111912571 + MER49 LTR ERV1 1 303 -620 417 132 60 24 chr9 5950030 5950139 -111912488 + MER4E LTR ERV1 62 284 -588 * 1664 211 23 8 chr9 5950138 5950489 -111912138 + MER4D LTR ERV1 548 903 0 1701 99 136 60 chr9 5950490 5950621 -111912006 - L1MCa LINE L1 -4325 2101 1981 1208 217 83 4 chr9 5950621 5950898 -111911729 + AluJo SINE Alu 2 300 -2 1701 99 136 60 chr9 5950898 5951118 -111911509 - L1MCa LINE L1 -4445 1981 1723 492 258 108 11 chr9 5951162 5951348 -111911279 - MIR SINE MIR -10 252 49 454 121 55 22 chr9 5951636 5951727 -111910900 + L1MB3 LINE L1 6088 6181 -2 1117 177 77 39 chr9 5951952 5952221 -111910406 + MER33 DNA MER1_type 1 285 -2300 2253 114 0 0 chr9 5952221 5952527 -111910100 + AluSq SINE Alu 1 306 -7 1117 177 77 39 chr9 5952527 5952568 -111910059 + MER33 DNA MER1_type 285 323 -1 951 211 32 0 chr9 5952577 5952762 -111909865 + MIR SINE MIR 1 191 -71 2409 76 3 0 chr9 5953817 5954108 -111908519 - AluSp SINE Alu -21 292 1 1074 240 137 36 chr9 5954384 5954801 -111907826 + MER113 DNA MER1_type? 21 479 -42 5549 154 32 38 chr9 5955469 5956078 -111906549 - L1 LINE L1 -866 5280 4680 2250 108 10 0 chr9 5956078 5956385 -111906242 - AluSx SINE Alu -2 310 1 5549 154 32 38 chr9 5956385 5956948 -111905679 - L1 LINE L1 -1466 4680 4115 2669 55 0 0 chr9 5958962 5959273 -111903354 - AluY SINE Alu 0 311 1 397 253 101 0 chr9 5959874 5959973 -111902654 - MIR SINE MIR -18 244 136 206 301 24 36 chr9 5960176 5960259 -111902368 + L2 LINE L2 2988 3069 -203 318 206 0 0 chr9 5961026 5961094 -111901533 + (TA)n Simple_repeat Simple_repeat 1 68 0 23 68 0 0 chr9 5961105 5961149 -111901478 + AT_rich Low_complexity Low_complexity 1 44 0 181 355 151 17 chr9 5961852 5962024 -111900603 - L2 LINE L2 -344 2970 2776 181 268 18 54 chr9 5962025 5962081 -111900546 - L2 LINE L2 -489 2825 2772 2050 101 3 62 chr9 5962102 5962410 -111900217 + AluSx SINE Alu 1 290 -22 1065 127 42 0 chr9 5962988 5963154 -111899473 + AluJb SINE Alu 5 177 -135 257 119 0 85 chr9 5963204 5963263 -111899364 + MADE1 DNA Mariner 27 80 0 677 149 74 0 chr9 5963263 5963384 -111899243 + AluSg/x SINE Alu 171 300 -12 22 35 0 0 chr9 5963783 5963812 -111898815 + AT_rich Low_complexity Low_complexity 1 29 0 369 0 0 0 chr9 5964094 5964135 -111898492 + (CA)n Simple_repeat Simple_repeat 2 42 0 1142 171 33 19 chr9 5968839 5969049 -111893578 - AluJo SINE Alu -16 296 84 2289 115 0 0 chr9 5969627 5969939 -111892688 + AluSx SINE Alu 1 312 0 2138 107 0 0 chr9 5970494 5970766 -111891861 - AluSg SINE Alu -38 272 1 1274 153 5 5 chr9 5970870 5971072 -111891555 - AluJb SINE Alu -24 288 87 2187 78 0 0 chr9 5971077 5971347 -111891280 - AluY SINE Alu -7 304 35 263 182 61 15 chr9 5971394 5971460 -111891167 + MIR SINE MIR 97 165 -97 246 274 44 71 chr9 5971560 5971673 -111890954 + L3b LINE CR1 1390 1499 -84 4739 252 99 23 chr9 5971673 5973501 -111889126 + L2 LINE L2 1326 3311 -2 21 36 0 0 chr9 5973935 5973963 -111888664 + AT_rich Low_complexity Low_complexity 1 28 0 416 314 92 59 chr9 5974246 5974485 -111888142 - MIR SINE MIR -2 260 14 245 133 67 0 chr9 5974678 5974723 -111887904 - L1MB8 LINE L1 0 6178 6131 225 0 0 0 chr9 5974920 5974945 -111887682 + (TA)n Simple_repeat Simple_repeat 2 26 0 1725 167 0 13 chr9 5976944 5977249 -111885378 - MER2 DNA MER2_type -44 301 1 29 47 0 0 chr9 5977445 5977488 -111885139 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr9 5977688 5977709 -111884918 + AT_rich Low_complexity Low_complexity 1 21 0 2013 147 0 22 chr9 5978904 5979216 -111883411 - AluSx SINE Alu -7 305 1 266 132 0 0 chr9 5979290 5979328 -111883299 - tRNA-Lys-AAG tRNA tRNA -38 38 1 1717 187 3 0 chr9 5980624 5980918 -111881709 + AluJb SINE Alu 1 295 -17 2096 122 3 7 chr9 5981498 5981794 -111880833 + AluSg SINE Alu 1 295 -15 2199 90 7 3 chr9 5981825 5982115 -111880512 + AluSx SINE Alu 21 311 -1 21 36 0 0 chr9 5982668 5982696 -111879931 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 27 chr9 5982721 5982735 -111879892 + AT_rich Low_complexity Low_complexity 1 14 -22 1653 160 0 28 chr9 5982735 5983017 -111879610 + AluJo SINE Alu 27 300 -12 26 0 0 27 chr9 5983017 5983039 -111879588 + AT_rich Low_complexity Low_complexity 14 36 0 211 369 63 36 chr9 5983072 5983183 -111879444 + L2 LINE L2 3157 3270 -2 23 0 0 0 chr9 5983548 5983571 -111879056 + AT_rich Low_complexity Low_complexity 1 23 0 631 222 108 75 chr9 5984269 5984481 -111878146 - MER20 DNA MER1_type 0 219 1 2133 71 7 68 chr9 5984734 5985043 -111877584 - AluSg SINE Alu -20 290 1 22 35 0 0 chr9 5985442 5985471 -111877156 + AT_rich Low_complexity Low_complexity 1 29 0 265 128 0 0 chr9 5986289 5986336 -111876291 + L1MC2 LINE L1 6289 6335 -9 32 57 0 0 chr9 5986540 5986593 -111876034 + AT_rich Low_complexity Low_complexity 1 53 0 300 65 81 0 chr9 5986950 5987012 -111875615 + (CATAA)n Simple_repeat Simple_repeat 4 70 0 1898 149 3 3 chr9 5987426 5987727 -111874900 - AluJo SINE Alu -11 301 1 22 0 0 0 chr9 5989650 5989672 -111872955 + AT_rich Low_complexity Low_complexity 1 22 0 335 130 159 0 chr9 5990680 5990749 -111871878 + MER116 DNA Mariner 1 80 0 493 236 203 0 chr9 5991745 5991868 -111870759 - MER5A DNA MER1_type -1 188 41 21 57 0 0 chr9 5992104 5992139 -111870488 + AT_rich Low_complexity Low_complexity 1 35 0 193 230 58 69 chr9 5992673 5992760 -111869867 - L3 LINE CR1 -1 1576 1491 22 0 0 0 chr9 5993337 5993359 -111869268 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr9 5993379 5993422 -111869205 + AT_rich Low_complexity Low_complexity 1 43 0 687 136 0 0 chr9 5993817 5993948 -111868679 + AluSc SINE Alu 189 319 0 803 191 56 28 chr9 5994909 5995087 -111867540 - MIR SINE MIR -71 191 9 282 317 10 30 chr9 5995098 5995199 -111867428 + MER5A DNA MER1_type 91 189 0 1850 132 69 36 chr9 5995252 5995585 -111867042 + MER2 DNA MER2_type 1 344 0 378 0 0 0 chr9 5995586 5995628 -111866999 + (CA)n Simple_repeat Simple_repeat 2 43 0 181 160 20 20 chr9 5996474 5996524 -111866103 + CT-rich Low_complexity Low_complexity 2 51 0 1990 103 18 11 chr9 5996551 5996871 -111865756 - AluSp SINE Alu 0 322 1 446 200 40 153 chr9 5996898 5997173 -111865454 + MER112 DNA MER1_type 11 254 -6 213 150 17 33 chr9 5998228 5998288 -111864339 + (TA)n Simple_repeat Simple_repeat 2 60 0 477 279 29 23 chr9 6000015 6000187 -111862440 - MER5A DNA MER1_type 0 189 17 285 234 0 85 chr9 6000428 6000481 -111862146 + L2 LINE L2 3208 3251 -62 959 210 83 5 chr9 6000481 6000686 -111861941 - MER58A DNA MER1_type -3 221 1 285 234 0 85 chr9 6000686 6000726 -111861901 + L2 LINE L2 3251 3293 -20 348 169 28 0 chr9 6001526 6001597 -111861030 - MER116 DNA Mariner -5 75 3 233 227 53 27 chr9 6004197 6004272 -111858355 - L1M3f LINE L1 -5022 306 230 429 325 38 19 chr9 6005062 6005219 -111857408 - L2 LINE L2 -3 3269 3110 659 257 43 104 chr9 6005284 6005507 -111857120 + MLT1J LTR MaLR 1 236 -275 1956 156 3 19 chr9 6005507 6005821 -111856806 + AluJo SINE Alu 1 309 -3 659 257 43 104 chr9 6005821 6005893 -111856734 + MLT1J LTR MaLR 236 311 -200 1973 194 29 52 chr9 6005893 6006409 -111856218 - MLT1D LTR MaLR -1 504 1 659 257 43 104 chr9 6006409 6006555 -111856072 + MLT1J LTR MaLR 311 416 -95 241 300 80 0 chr9 6006638 6006738 -111855889 - L2 LINE L2 -237 3035 2928 1935 123 0 0 chr9 6007087 6007347 -111855280 + AluSx SINE Alu 31 290 -22 594 81 12 0 chr9 6007447 6007533 -111855094 + L1M4 LINE L1 2636 2722 -3424 480 267 105 53 chr9 6007567 6007814 -111854813 + HAL1 LINE L1 1076 1335 -1172 3296 99 12 12 chr9 6007821 6008307 -111854320 + MER41A LTR ERV1 1 486 -68 2325 110 0 0 chr9 6008466 6008774 -111853853 + AluSq SINE Alu 1 308 -5 775 222 53 113 chr9 6010024 6010290 -111852337 + MIR SINE MIR 10 259 -3 254 376 73 18 chr9 6010446 6010555 -111852072 + L2 LINE L2 3108 3222 -50 596 296 42 19 chr9 6010775 6010991 -111851636 - MIR SINE MIR -7 255 35 379 294 95 50 chr9 6011031 6011252 -111851375 - MIR SINE MIR -12 250 20 27 0 0 0 chr9 6011448 6011475 -111851152 + AT_rich Low_complexity Low_complexity 1 27 0 229 152 0 0 chr9 6012148 6012181 -111850446 + Alu SINE Alu 136 168 -135 578 130 10 0 chr9 6012181 6012281 -111850346 + FLAM_A SINE Alu 16 116 -26 708 212 42 94 chr9 6012977 6013189 -111849438 + MIR SINE MIR 59 259 -3 2402 91 0 0 chr9 6013940 6014248 -111848379 + AluSq SINE Alu 1 308 -5 496 250 55 30 chr9 6014438 6014638 -111847989 + L1ME4a LINE L1 5712 5916 -205 23 0 0 0 chr9 6015144 6015167 -111847460 + AT_rich Low_complexity Low_complexity 1 23 0 2054 20 0 0 chr9 6015553 6015806 -111846821 - L1PA2 LINE L1 -2909 3237 2985 17907 30 0 0 chr9 6015806 6018730 -111843897 + L1PA2 LINE L1 3227 6155 0 464 203 133 31 chr9 6018985 6019051 -111843576 + MER103 DNA DNA 26 84 -82 555 253 119 66 chr9 6019051 6019371 -111843256 + MER46C DNA MER2_type 1 337 -1 464 203 133 31 chr9 6019371 6019432 -111843195 + MER103 DNA DNA 84 166 0 21 36 0 0 chr9 6020028 6020056 -111842571 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr9 6020073 6020101 -111842526 + AT_rich Low_complexity Low_complexity 1 28 0 2283 114 0 0 chr9 6020111 6020418 -111842209 - AluSg SINE Alu -3 307 1 2240 102 0 7 chr9 6023202 6023506 -111839121 - AluSx SINE Alu -10 302 1 23 0 0 0 chr9 6023923 6023946 -111838681 + AT_rich Low_complexity Low_complexity 1 23 0 1794 182 76 50 chr9 6024122 6024429 -111838198 + L1M4 LINE L1 5019 5317 -867 2204 125 0 3 chr9 6024429 6024740 -111837887 + AluSq SINE Alu 1 310 -3 1794 182 76 50 chr9 6024740 6025133 -111837494 + L1M4 LINE L1 5317 5749 -435 23 33 0 0 chr9 6025323 6025353 -111837274 + AT_rich Low_complexity Low_complexity 1 30 0 393 321 82 51 chr9 6025439 6026050 -111836577 + L1MEd LINE L1 409 1038 -5167 2270 191 34 0 chr9 6026069 6026487 -111836140 + MSTB1 LTR MaLR 1 432 0 250 284 67 8 chr9 6026487 6026621 -111836006 + HAL1 LINE L1 1504 1645 -862 2134 132 0 0 chr9 6026845 6027133 -111835494 + AluSx SINE Alu 1 288 -24 1744 174 24 0 chr9 6027267 6027565 -111835062 + AluJo SINE Alu 1 305 -7 532 285 68 41 chr9 6027583 6027994 -111834633 + L1MEd LINE L1 1246 1667 -4729 1193 255 66 45 chr9 6028015 6028411 -111834216 + L1MEc LINE L1 38 441 -5955 2181 206 71 36 chr9 6028439 6028814 -111833813 + L1MEc LINE L1 530 937 -5459 2309 106 3 13 chr9 6028814 6029126 -111833501 + AluSq SINE Alu 1 309 -4 2181 206 71 36 chr9 6029126 6029368 -111833259 + L1MEc LINE L1 937 1169 -5227 624 190 83 24 chr9 6029641 6029846 -111832781 + HAL1 LINE L1 2261 2477 -30 195 320 48 39 chr9 6030688 6030791 -111831836 - MIR SINE MIR -64 144 41 2294 70 42 0 chr9 6031226 6031511 -111831116 + AluY SINE Alu 1 297 -14 467 233 40 45 chr9 6032205 6032381 -111830246 - LTR67 LTR ERVL -3 554 380 415 350 0 21 chr9 6032544 6032687 -111829940 - LTR67 LTR ERVL -405 152 13 1852 148 20 10 chr9 6032892 6033195 -111829432 + AluJb SINE Alu 1 306 -6 2135 132 7 0 chr9 6033395 6033705 -111828922 + AluSx SINE Alu 1 312 0 219 69 0 0 chr9 6034585 6034614 -111828013 + (CAA)n Simple_repeat Simple_repeat 2 30 0 357 331 70 6 chr9 6034788 6034945 -111827682 + LTR33 LTR ERVL 90 256 -265 216 290 145 0 chr9 6035149 6035211 -111827416 - L2 LINE L2 -994 2320 2250 548 97 18 26 chr9 6035211 6035324 -111827303 + (TCTA)n Simple_repeat Simple_repeat 2 113 0 310 269 48 87 chr9 6035325 6035533 -111827094 + L1ME3 LINE L1 5668 5867 -295 1080 59 0 0 chr9 6035557 6035692 -111826935 + L1PB1 LINE L1 6010 6144 -7 210 143 0 0 chr9 6035694 6035729 -111826898 + (TATG)n Simple_repeat Simple_repeat 2 36 0 571 243 40 12 chr9 6035837 6036010 -111826617 + L1MC4a LINE L1 36 213 -6183 2283 138 104 3 chr9 6036024 6036408 -111826219 + MSTC LTR MaLR 6 428 0 405 358 55 12 chr9 6036409 6036574 -111826053 + L1MC4a LINE L1 213 384 -6012 273 231 0 0 chr9 6036669 6036721 -111825906 + MER2 DNA MER2_type 294 345 0 615 296 89 25 chr9 6036781 6037176 -111825451 + L1MC4a LINE L1 494 913 -5483 286 190 175 36 chr9 6037188 6037325 -111825302 + L1MC4a LINE L1 974 1129 -5267 1443 240 84 57 chr9 6037335 6037623 -111825004 + L1MC4a LINE L1 1332 1611 -4785 396 0 0 0 chr9 6037623 6037667 -111824960 + (CA)n Simple_repeat Simple_repeat 2 45 0 1443 240 84 57 chr9 6037667 6038165 -111824462 + L1MC4a LINE L1 1611 2139 -4257 509 222 36 30 chr9 6038141 6038308 -111824319 + L1MC4a LINE L1 2415 2582 -3633 * 1939 239 102 21 chr9 6038304 6039164 -111823463 + L1MC4a LINE L1 4365 5349 -866 2352 94 3 0 chr9 6039164 6039473 -111823154 + AluSp SINE Alu 1 310 -3 1939 239 102 21 chr9 6039473 6039495 -111823132 + L1MC4a LINE L1 5349 5368 -847 4763 77 22 2 chr9 6039634 6040274 -111822353 - L1PA10 LINE L1 -9 6159 5507 23 0 0 0 chr9 6040309 6040332 -111822295 + AT_rich Low_complexity Low_complexity 1 23 0 591 253 10 3 chr9 6040638 6040834 -111821793 + MIR SINE MIR 6 262 0 192 255 43 0 chr9 6041449 6041496 -111821131 + MIR SINE MIR 100 148 -60 196 375 0 0 chr9 6041642 6041698 -111820929 + L3 LINE CR1 1521 1576 -1 24 53 0 0 chr9 6041835 6041873 -111820754 + AT_rich Low_complexity Low_complexity 1 38 0 2284 96 3 13 chr9 6042609 6042923 -111819704 + AluSp SINE Alu 1 311 -2 860 169 38 76 chr9 6042923 6043107 -111819520 + AluJb SINE Alu 126 302 -10 1900 125 45 3 chr9 6043328 6043616 -111819011 - AluJb SINE Alu -12 300 1 21 36 0 0 chr9 6044035 6044063 -111818564 + AT_rich Low_complexity Low_complexity 1 28 0 666 318 84 14 chr9 6044429 6044914 -111817713 + L1MC4a LINE L1 5456 5974 -1903 189 0 0 0 chr9 6044968 6044989 -111817638 + (TA)n Simple_repeat Simple_repeat 2 22 0 1017 302 79 23 chr9 6045115 6045228 -111817399 + L2 LINE L2 2600 2705 -608 2154 125 0 7 chr9 6045228 6045533 -111817094 + AluSx SINE Alu 1 303 -9 1017 302 79 23 chr9 6045533 6046082 -111816545 + L2 LINE L2 2705 3299 -14 21 36 0 0 chr9 6046226 6046254 -111816373 + AT_rich Low_complexity Low_complexity 1 28 0 585 131 82 112 chr9 6046679 6046821 -111815806 + Charlie7 DNA MER1_type 1822 1958 -654 2254 102 10 0 chr9 6046821 6047124 -111815503 + AluSx SINE Alu 1 306 -6 585 131 82 112 chr9 6047124 6047187 -111815440 + Charlie7 DNA MER1_type 1958 2021 -591 1492 251 122 9 chr9 6047197 6047656 -111814971 - LTR33 LTR ERVL -10 511 1 613 236 61 8 chr9 6047658 6048155 -111814472 + Charlie7 DNA MER1_type 2020 2612 0 2347 82 3 3 chr9 6048683 6048987 -111813640 - AluSp SINE Alu -9 304 1 242 327 111 7 chr9 6049311 6049464 -111813163 + L2 LINE L2 1792 1960 -1354 292 303 183 6 chr9 6049760 6049935 -111812692 - L2 LINE L2 -914 2400 2195 22 56 0 0 chr9 6049943 6049979 -111812648 + AT_rich Low_complexity Low_complexity 1 36 0 1965 150 0 38 chr9 6050095 6050415 -111812212 - AluSx SINE Alu -1 311 4 260 276 145 41 chr9 6051548 6051693 -111810934 - L2 LINE L2 0 3313 3154 282 320 98 7 chr9 6051811 6051964 -111810663 - L2 LINE L2 -841 2473 2307 23 0 0 0 chr9 6052865 6052888 -111809739 + AT_rich Low_complexity Low_complexity 1 23 0 271 318 88 46 chr9 6053367 6053543 -111809084 + L2 LINE L2 2793 2962 -310 418 261 55 12 chr9 6053814 6053979 -111808648 - L1ME4a LINE L1 -5 6116 5945 202 357 137 15 chr9 6054850 6055304 -111807323 + L2 LINE L2 2430 2938 -376 222 296 84 0 chr9 6055383 6055454 -111807173 + L2 LINE L2 3191 3267 -5 207 186 0 23 chr9 6055993 6056036 -111806591 + L2 LINE L2 3226 3267 -5 1687 166 30 27 chr9 6056475 6056771 -111805856 - AluSq SINE Alu -15 298 2 21 0 0 0 chr9 6056979 6057000 -111805627 + AT_rich Low_complexity Low_complexity 1 21 0 37 39 0 0 chr9 6057538 6057589 -111805038 + AT_rich Low_complexity Low_complexity 1 51 0 384 217 19 47 chr9 6057646 6057752 -111804875 - Charlie7 DNA MER1_type -2507 105 3 268 269 60 0 chr9 6058173 6058240 -111804387 - MIR3 SINE MIR -49 159 89 1993 98 34 0 chr9 6059016 6059311 -111803316 + AluSx SINE Alu 1 305 -7 233 217 22 0 chr9 6059428 6059474 -111803153 + L3 LINE CR1 1524 1570 -7 761 178 55 18 chr9 6059944 6060107 -111802520 - MIR SINE MIR -3 259 91 24 53 0 0 chr9 6061824 6061862 -111800765 + GC_rich Low_complexity Low_complexity 1 38 0 22 89 0 0 chr9 6061915 6061960 -111800667 + GC_rich Low_complexity Low_complexity 1 45 0 206 224 0 20 chr9 6062142 6062191 -111800436 + G-rich Low_complexity Low_complexity 2 49 0 428 168 193 0 chr9 6063717 6063836 -111798791 - MIR SINE MIR 0 262 121 316 271 81 27 chr9 6064129 6064146 -111798481 - L1ME4a LINE L1 -11 6110 6095 2236 105 10 3 chr9 6064146 6064451 -111798176 + AluSq SINE Alu 1 307 -6 316 271 81 27 chr9 6064451 6064654 -111797973 - L1ME4a LINE L1 -26 6095 5878 1980 125 10 3 chr9 6069668 6069963 -111792664 - AluJb SINE Alu -15 297 1 1592 151 69 7 chr9 6070035 6070340 -111792287 + L1MB8 LINE L1 5855 6178 0 213 270 0 16 chr9 6070398 6070461 -111792166 - MER5A DNA MER1_type -1 188 127 226 340 46 46 chr9 6070485 6070638 -111791989 + MIR3 SINE MIR 17 169 -39 2277 99 3 13 chr9 6070698 6071010 -111791617 - AluSc SINE Alu 0 309 1 2289 98 0 0 chr9 6071473 6071760 -111790867 + AluSc SINE Alu 1 287 -22 339 344 38 38 chr9 6071801 6071984 -111790643 + MER5A DNA MER1_type 7 189 0 2354 122 0 0 chr9 6072037 6072349 -111790278 - AluSx SINE Alu 0 312 1 21 0 0 0 chr9 6072423 6072444 -111790183 + AT_rich Low_complexity Low_complexity 1 21 0 553 192 54 42 chr9 6072456 6072630 -111789997 + L1ME LINE L1 5395 5575 -589 2344 80 0 43 chr9 6072634 6072960 -111789667 + AluSx SINE Alu 1 312 0 2466 77 0 0 chr9 6073007 6073306 -111789321 + AluSc SINE Alu 1 299 -10 294 308 27 104 chr9 6073502 6073801 -111788826 - L2 LINE L2 -193 3079 2804 3112 92 11 9 chr9 6073812 6074259 -111788368 + LTR7 LTR ERV1 1 448 -2 6393 130 30 65 chr9 6074261 6075992 -111786635 + HERVH LTR ERV1 1 1797 -5916 1029 199 35 87 chr9 6076851 6077038 -111785589 + L1MC5 LINE L1 6876 7002 -959 1729 165 22 41 chr9 6077038 6077354 -111785273 - AluJo SINE Alu -2 310 1 1029 199 35 87 chr9 6077354 6077575 -111785052 + L1MC5 LINE L1 7002 7233 -728 656 280 213 17 chr9 6077678 6078081 -111784546 + LTR50 LTR ERVL 8 489 -306 517 279 49 11 chr9 6078081 6078264 -111784363 + LTR33A LTR ERVL 332 521 -2 3578 212 74 30 chr9 6078328 6079413 -111783214 - L1ME1 LINE L1 -5 6161 4995 2206 103 0 7 chr9 6079413 6079695 -111782932 + AluSx SINE Alu 2 281 -31 3578 212 74 30 chr9 6079695 6079980 -111782647 - L1ME1 LINE L1 -1171 4995 4724 21 36 0 0 chr9 6080298 6080326 -111782301 + AT_rich Low_complexity Low_complexity 1 28 0 569 248 33 8 chr9 6080740 6080861 -111781766 - L2 LINE L2 0 3313 3190 2239 86 41 0 chr9 6081260 6081550 -111781077 + AluSx SINE Alu 1 302 -10 21 0 0 0 chr9 6081858 6081879 -111780748 + AT_rich Low_complexity Low_complexity 1 21 0 2413 97 3 0 chr9 6081970 6082280 -111780347 + AluSx SINE Alu 2 312 0 1796 88 0 0 chr9 6082291 6082518 -111780109 + AluY SINE Alu 85 311 0 338 305 117 15 chr9 6082904 6083101 -111779526 - L1MC4 LINE L1 -552 7490 7274 344 205 25 57 chr9 6083110 6083232 -111779395 - L1MC4 LINE L1 -827 7215 7098 205 171 0 0 chr9 6083346 6083387 -111779240 + T-rich Low_complexity Low_complexity 3 43 0 320 169 34 0 chr9 6083389 6083448 -111779179 - LTR40a LTR ERVL -2 517 457 250 356 0 0 chr9 6083481 6083540 -111779087 + C-rich Low_complexity Low_complexity 1 59 0 1383 209 72 70 chr9 6083652 6084053 -111778574 - LTR40a LTR ERVL -95 424 23 867 286 133 29 chr9 6084107 6084484 -111778143 + LTR33 LTR ERVL 99 514 -7 341 284 54 27 chr9 6084630 6084778 -111777849 + L1M4 LINE L1 3792 3943 -2203 373 256 171 18 chr9 6084923 6085087 -111777540 + MER5A DNA MER1_type 1 189 0 898 98 81 0 chr9 6085101 6085224 -111777403 - FLAM_C SINE Alu 0 133 1 310 257 57 74 chr9 6085254 6085429 -111777198 - HAL1 LINE L1 -10 2497 2326 1853 96 146 0 chr9 6085586 6085847 -111776780 - AluSq SINE Alu -4 299 1 2376 74 0 36 chr9 6085928 6086237 -111776390 + AluY SINE Alu 1 298 -13 1718 120 32 0 chr9 6086333 6086583 -111776044 - AluSc SINE Alu -16 293 36 921 195 16 16 chr9 6086887 6087072 -111775555 - AluJo SINE Alu -7 305 121 27 49 0 0 chr9 6087408 6087449 -111775178 + AT_rich Low_complexity Low_complexity 1 41 0 2196 113 0 31 chr9 6087660 6087978 -111774649 + AluSx SINE Alu 3 310 -2 7172 187 132 8 chr9 6088104 6089514 -111773113 + L1PA13 LINE L1 1 1585 -5202 5868 107 53 2 chr9 6089517 6090814 -111771813 + L1PA13 LINE L1 4817 6163 0 1042 135 53 6 chr9 6091625 6091795 -111770832 - L1PB3 LINE L1 -1 6869 6692 12613 235 62 65 chr9 6092043 6093450 -111769177 - L1PB3 LINE L1 -164 6706 5296 2104 134 3 3 chr9 6093450 6093757 -111768870 - AluSq SINE Alu -6 307 1 12613 235 62 65 chr9 6093757 6095077 -111767550 - L1PB3 LINE L1 -1574 5296 3973 2006 133 0 44 chr9 6095077 6095394 -111767233 - AluSx SINE Alu -9 303 1 12613 235 62 65 chr9 6095394 6097798 -111764829 - L1PB3 LINE L1 -2897 3973 2682 2193 122 20 0 chr9 6097798 6098102 -111764525 - AluSx SINE Alu -2 310 1 12613 235 62 65 chr9 6098102 6100774 -111761853 - L1PB3 LINE L1 -4188 2682 3 255 384 58 0 chr9 6101254 6101340 -111761287 - MIR SINE MIR -90 118 28 1683 87 4 13 chr9 6101514 6101745 -111760882 + AluSq SINE Alu 44 272 -41 3393 60 2 10 chr9 6101847 6102262 -111760365 + L1PA5 LINE L1 5743 6154 0 379 231 161 0 chr9 6102503 6102633 -111759994 - L1MC5 LINE L1 -48 7913 7763 602 180 9 0 chr9 6103339 6103450 -111759177 - Charlie4 DNA MER1_type -34 1927 1816 391 298 7 64 chr9 6104138 6104279 -111758348 + MLT1I LTR MaLR 22 154 -255 198 167 0 0 chr9 6104281 6104317 -111758310 + CT-rich Low_complexity Low_complexity 2 37 0 728 171 0 0 chr9 6104327 6104432 -111758195 - FLAM_C SINE Alu -21 122 18 739 266 41 18 chr9 6104469 6104691 -111757936 + MLT1I LTR MaLR 184 450 0 315 235 12 12 chr9 6104738 6104819 -111757808 - MIR SINE MIR -110 152 72 180 225 25 0 chr9 6105171 6105211 -111757416 + MER5B DNA MER1_type 13 53 -125 237 311 76 98 chr9 6105421 6105698 -111756929 + L2 LINE L2 2924 3194 -78 21 0 0 0 chr9 6105726 6105747 -111756880 + GC_rich Low_complexity Low_complexity 1 21 0 546 242 95 38 chr9 6106120 6106331 -111756296 - L2 LINE L2 0 3313 3091 180 0 0 0 chr9 6106640 6106660 -111755967 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1101 216 24 111 chr9 6106668 6107039 -111755588 + MSTD LTR MaLR 1 339 -57 514 147 10 10 chr9 6107039 6107141 -111755486 + CT-rich Low_complexity Low_complexity 3 104 0 5204 91 11 14 chr9 6107154 6107850 -111754777 - L1PA13 LINE L1 -14 6149 5456 507 100 0 0 chr9 6107851 6107921 -111754706 + MSTD LTR MaLR 388 457 0 1737 157 0 35 chr9 6108069 6108355 -111754272 - AluJo SINE Alu -36 276 1 745 16 63 0 chr9 6108546 6108651 -111753976 - L1P1 LINE L1 -671 5484 5374 271 0 51 0 chr9 6108990 6109029 -111753598 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 7584 22 0 0 chr9 6109033 6109891 -111752736 - L1PA3 LINE L1 0 6155 5298 * 41614 71 6 2 chr9 6109886 6115254 -111747373 - L1P LINE L1 -756 5390 5 574 267 37 19 chr9 6117292 6117453 -111745174 - MIR SINE MIR -93 169 6 359 262 19 19 chr9 6117731 6117838 -111744789 - MIR SINE MIR -26 236 130 365 280 107 33 chr9 6119113 6119263 -111743364 + LTR16C LTR ERVL 322 482 -9 1318 81 27 27 chr9 6120059 6120244 -111742383 + AluY SINE Alu 1 185 -126 1639 170 3 39 chr9 6120856 6121168 -111741459 + AluJo SINE Alu 1 301 -11 2032 95 4 0 chr9 6121181 6121444 -111741183 - AluSq SINE Alu -6 307 44 1482 208 72 67 chr9 6121681 6122100 -111740527 - LTR40a LTR ERVL -76 443 23 867 286 133 29 chr9 6122154 6122531 -111740096 + LTR33 LTR ERVL 99 514 -7 341 284 54 27 chr9 6122677 6122825 -111739802 + L1M4 LINE L1 3792 3943 -2203 23 68 0 0 chr9 6122877 6122921 -111739706 + AT_rich Low_complexity Low_complexity 1 44 0 373 256 171 18 chr9 6122970 6123134 -111739493 + MER5A DNA MER1_type 1 189 0 898 98 81 0 chr9 6123148 6123271 -111739356 - FLAM_C SINE Alu 0 133 1 310 257 57 74 chr9 6123301 6123476 -111739151 - HAL1 LINE L1 -10 2497 2326 1853 96 146 0 chr9 6123633 6123894 -111738733 - AluSq SINE Alu -4 299 1 2059 105 3 37 chr9 6123975 6124305 -111738322 + AluY SINE Alu 1 320 0 2335 93 3 0 chr9 6124535 6124837 -111737790 + AluY SINE Alu 1 303 -8 235 248 86 68 chr9 6125454 6125517 -111737110 + MER103 DNA DNA 11 78 -88 2224 118 0 0 chr9 6125517 6125821 -111736806 + AluSx SINE Alu 1 304 -8 235 248 86 68 chr9 6125821 6125874 -111736753 + MER103 DNA DNA 78 129 -37 220 313 163 0 chr9 6126212 6126359 -111736268 + L2 LINE L2 1918 2088 -1226 3738 110 12 2 chr9 6126636 6127144 -111735483 + LTR10D LTR ERV1 1 513 0 1616 267 42 56 chr9 6127170 6128226 -111734401 + HERVI LTR ERV1 23 1139 -6646 829 219 16 37 chr9 6128340 6128367 -111734260 - L1P LINE L1 -2652 3494 3468 2061 86 23 36 chr9 6128367 6128670 -111733957 + AluY SINE Alu 1 299 -12 829 219 16 37 chr9 6128670 6128884 -111733743 - L1P LINE L1 -2678 3468 3258 345 202 218 24 chr9 6128885 6129009 -111733618 + LTR50 LTR ERVL 586 733 -62 216 266 16 0 chr9 6129055 6129119 -111733508 + (TCTA)n Simple_repeat Simple_repeat 1 65 0 2273 112 3 0 chr9 6129150 6129454 -111733173 - AluSc SINE Alu -4 305 1 1139 213 46 59 chr9 6129651 6129956 -111732671 - LTR8A LTR ERV1 0 727 427 316 271 81 27 chr9 6130995 6131198 -111731429 + L1ME4a LINE L1 5878 6095 -26 2236 105 10 3 chr9 6131198 6131503 -111731124 - AluSq SINE Alu -6 307 1 316 271 81 27 chr9 6131503 6131520 -111731107 + L1ME4a LINE L1 6095 6110 -11 428 168 193 0 chr9 6131813 6131932 -111730695 + MIR SINE MIR 121 262 0 502 319 101 4 chr9 6133582 6133839 -111728788 + MLT1J LTR MaLR 228 509 -2 1347 265 23 8 chr9 6133854 6134205 -111728422 - LTR16A LTR ERVL -6 444 89 437 295 36 36 chr9 6134852 6135018 -111727609 + LTR67 LTR ERVL 23 188 -369 534 241 13 57 chr9 6135161 6135319 -111727308 + LTR67 LTR ERVL 393 543 -14 1040 165 41 28 chr9 6135670 6135888 -111726739 - AluJo SINE Alu -5 307 87 1971 138 13 7 chr9 6135985 6136289 -111726338 - AluJb SINE Alu -6 306 1 308 253 48 0 chr9 6136791 6136874 -111725753 + MLT1H LTR MaLR 1 87 -462 1169 191 9 23 chr9 6136881 6137101 -111725526 - MER20 DNA MER1_type 0 219 3 331 183 73 12 chr9 6137401 6137483 -111725144 + MLT1H LTR MaLR 463 549 0 1080 201 44 97 chr9 6137709 6138122 -111724505 - L1M4 LINE L1 -832 5314 4924 258 269 106 14 chr9 6138213 6138354 -111724273 + L1ME4a LINE L1 5967 6120 -1 2120 131 0 0 chr9 6138361 6138667 -111723960 - AluSq SINE Alu 0 306 1 4104 126 76 35 chr9 6139472 6140221 -111722406 + LTR1 LTR ERV1 6 785 0 1317 177 45 78 chr9 6140472 6140818 -111721809 + LTR37A LTR ERV1 18 349 -77 1739 167 38 0 chr9 6140818 6141106 -111721521 + AluJo SINE Alu 1 299 -13 1317 177 45 78 chr9 6141106 6141182 -111721445 + LTR37A LTR ERV1 349 426 0 430 186 150 35 chr9 6142063 6142176 -111720451 - FLAM_C SINE Alu -7 126 1 1949 108 7 51 chr9 6142471 6142803 -111719824 + AluSg SINE Alu 1 319 0 2283 103 3 0 chr9 6143033 6143335 -111719292 + AluY SINE Alu 1 303 -8 235 248 86 68 chr9 6143952 6144015 -111718612 + MER103 DNA DNA 11 78 -88 2224 118 0 0 chr9 6144015 6144319 -111718308 + AluSx SINE Alu 1 304 -8 235 248 86 68 chr9 6144319 6144372 -111718255 + MER103 DNA DNA 78 129 -37 220 313 163 0 chr9 6144710 6144857 -111717770 + L2 LINE L2 1918 2088 -1226 3742 110 12 2 chr9 6145134 6145642 -111716985 + LTR10D LTR ERV1 1 513 0 1630 264 56 55 chr9 6145668 6146740 -111715887 + HERVI LTR ERV1 23 1171 -6614 35450 178 10 19 chr9 6147070 6153758 -111708869 + HERVI LTR ERV1 1144 7769 -16 3774 106 10 8 chr9 6153774 6154286 -111708341 + LTR10D LTR ERV1 1 513 0 534 306 124 6 chr9 6154291 6154605 -111708022 - HAL1 LINE L1 -431 2076 1726 360 344 51 28 chr9 6154607 6154822 -111707805 + MLT1J LTR MaLR 1 220 -291 221 125 0 42 chr9 6155179 6155227 -111707400 + (TAAAAA)n Simple_repeat Simple_repeat 1 46 0 679 325 94 22 chr9 6156049 6156452 -111706175 + L2 LINE L2 2181 2612 -702 385 286 0 0 chr9 6156511 6156609 -111706018 + L1MC4a LINE L1 5746 5843 -1965 2296 166 21 23 chr9 6156692 6157137 -111705490 + MSTB1 LTR MaLR 1 396 0 622 241 28 47 chr9 6157290 6157502 -111705125 - L1MC5 LINE L1 -48 7913 7706 926 223 9 38 chr9 6157503 6157714 -111704913 + MER3 DNA MER1_type 5 209 0 795 209 12 31 chr9 6157748 6157933 -111704694 + AluJo SINE Alu 127 312 0 400 209 12 0 chr9 6158032 6158118 -111704509 - AluJb SINE Alu -5 307 221 1107 140 12 6 chr9 6158118 6158289 -111704338 - AluJb SINE Alu -124 188 17 4724 128 44 33 chr9 6158649 6159462 -111703165 - L1PA16 LINE L1 -5 6161 5340 7241 215 35 11 chr9 6159463 6160673 -111701954 - L1 LINE L1 -959 5187 3925 2236 139 39 28 chr9 6160673 6161033 -111701594 + THE1B LTR MaLR 1 364 0 7241 215 35 11 chr9 6161033 6161459 -111701168 - L1 LINE L1 -2221 3925 3511 2148 55 0 8 chr9 6161470 6161758 -111700869 - AluY SINE Alu 0 312 27 2168 100 4 4 chr9 6161862 6162166 -111700461 - AluSq SINE Alu 0 308 5 2181 84 28 0 chr9 6162170 6162455 -111700172 + L1PB1 LINE L1 5858 6150 -1 7985 166 135 15 chr9 6162627 6164194 -111698433 - MER52A LTR ERV1 0 1755 1 431 367 25 17 chr9 6165225 6165462 -111697165 - MIR SINE MIR 0 262 24 1905 190 36 8 chr9 6165821 6166267 -111696360 - MER89 LTR ERV1 0 559 1 424 149 7 41 chr9 6166853 6166989 -111695638 - MER53 DNA DNA 0 189 3 210 167 0 0 chr9 6167147 6167183 -111695444 + MER91 DNA MER1_type 13 48 -92 422 114 0 29 chr9 6168114 6168184 -111694443 - L1PB4 LINE L1 -2 6154 6087 581 309 82 0 chr9 6169488 6169708 -111692919 + MIR SINE MIR 23 260 -2 1492 163 63 11 chr9 6169762 6170032 -111692595 + AluJo SINE Alu 3 286 -26 2403 90 0 6 chr9 6170034 6170345 -111692282 + AluY SINE Alu 1 309 -2 24 53 0 0 chr9 6170346 6170384 -111692243 + AT_rich Low_complexity Low_complexity 1 38 0 1187 197 165 76 chr9 6170823 6171358 -111691269 + LTR50 LTR ERVL 11 702 -93 192 40 0 0 chr9 6171358 6171383 -111691244 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 1187 197 165 76 chr9 6171383 6171478 -111691149 + LTR50 LTR ERVL 702 787 -8 1158 218 40 0 chr9 6171763 6171988 -111690639 - L1PB4 LINE L1 -2 6154 5921 432 271 160 27 chr9 6172239 6172427 -111690200 - MIR SINE MIR -2 260 48 27 0 0 0 chr9 6172459 6172486 -111690141 + AT_rich Low_complexity Low_complexity 1 27 0 3475 76 32 5 chr9 6172602 6172642 -111689985 - MLT2A1 LTR ERVL 0 444 407 225 0 0 0 chr9 6172642 6172667 -111689960 + (TA)n Simple_repeat Simple_repeat 2 26 0 3475 76 32 5 chr9 6172667 6173058 -111689569 - MLT2A1 LTR ERVL -37 407 1 41354 75 10 5 chr9 6173059 6178797 -111683830 - ERVL-A1 LTR ERVL -8 5756 33 1665 40 0 5 chr9 6178798 6178998 -111683629 - MLT2A1 LTR ERVL -244 200 2 972 179 19 61 chr9 6180125 6180337 -111682290 + LTR8A LTR ERV1 34 236 -491 1173 167 13 107 chr9 6180342 6180641 -111681986 - LTR27 LTR ERV1 -2 634 364 261 132 0 0 chr9 6180723 6180761 -111681866 - MER61B LTR ERV1 -286 139 102 * 925 174 11 17 chr9 6180738 6180916 -111681711 - LTR28 LTR ERV1 -842 178 2 1051 140 22 22 chr9 6180917 6181095 -111681532 + LTR8A LTR ERV1 233 410 -317 239 167 0 0 chr9 6181324 6181360 -111681267 - L1PB4 LINE L1 -297 5854 5819 2470 84 0 3 chr9 6181360 6181670 -111680957 - AluY SINE Alu -2 309 1 2331 131 8 11 chr9 6181696 6182055 -111680572 - THE1B LTR MaLR -1 363 6 1807 256 43 4 chr9 6182079 6182572 -111680055 - L1M4 LINE L1 -1018 5128 4617 2155 123 0 0 chr9 6182583 6182875 -111679752 - AluSg SINE Alu -18 292 1 337 282 21 18 chr9 6183255 6183381 -111679246 - MIR SINE MIR -36 172 45 1927 132 40 0 chr9 6184415 6184711 -111677916 + AluSx SINE Alu 5 312 0 1519 171 38 3 chr9 6184894 6185186 -111677441 - L1MB7 LINE L1 0 6184 5883 233 195 12 24 chr9 6185491 6185573 -111677054 + (TAA)n Simple_repeat Simple_repeat 1 81 0 320 267 23 0 chr9 6186189 6186275 -111676352 - MER69 DNA AcHobo -1727 799 712 255 216 165 31 chr9 6186284 6186381 -111676246 - MLT1F1 LTR MaLR -284 283 174 27 0 0 0 chr9 6187686 6187713 -111674914 + AT_rich Low_complexity Low_complexity 1 27 0 725 191 34 121 chr9 6187723 6187925 -111674702 + L1MC5 LINE L1 7452 7601 -360 1813 154 21 7 chr9 6187925 6188211 -111674416 + AluJo SINE Alu 1 290 -22 725 191 34 121 chr9 6188211 6188422 -111674205 + L1MC5 LINE L1 7601 7829 -132 195 42 0 0 chr9 6190314 6190338 -111672289 + (TTCA)n Simple_repeat Simple_repeat 4 27 0 4289 158 48 32 chr9 6190347 6190753 -111671874 + L1MB4 LINE L1 5174 5572 -608 2225 100 0 3 chr9 6190753 6191044 -111671583 + AluSc SINE Alu 1 290 -19 4289 158 48 32 chr9 6191044 6191371 -111671256 + L1MB4 LINE L1 5572 5927 -253 2617 173 7 9 chr9 6191371 6191798 -111670829 - MSTB LTR MaLR 0 426 1 4289 158 48 32 chr9 6191798 6191982 -111670645 + L1MB4 LINE L1 5927 6107 -73 493 325 75 9 chr9 6192059 6192271 -111670356 - MIR SINE MIR -31 231 6 25 0 0 0 chr9 6192691 6192716 -111669911 + AT_rich Low_complexity Low_complexity 1 25 0 240 69 0 0 chr9 6193573 6193602 -111669025 + U2 snRNA snRNA 1 29 -159 1187 252 35 22 chr9 6193630 6194031 -111668596 + L1MC5 LINE L1 6968 7373 -588 442 299 25 49 chr9 6194083 6194287 -111668340 + L1ME3A LINE L1 5963 6161 -9 2766 174 72 30 chr9 6194621 6194633 -111667994 + L1MB5 LINE L1 5566 5576 -598 1681 118 4 12 chr9 6194633 6194878 -111667749 + AluSx SINE Alu 38 280 -32 297 0 0 0 chr9 6194879 6194912 -111667715 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2766 174 72 30 chr9 6194912 6195465 -111667162 + L1MB5 LINE L1 5575 6157 -17 5066 170 6 20 chr9 6195485 6196459 -111666168 + L1P LINE L1 3037 3996 -2150 590 284 83 31 chr9 6196788 6197017 -111665610 - MIR SINE MIR -21 241 1 196 247 62 49 chr9 6197017 6197050 -111665577 - MER5A DNA MER1_type -148 41 8 682 226 104 28 chr9 6197744 6197956 -111664671 + MLT1H LTR MaLR 3 230 -319 375 182 28 114 chr9 6197997 6198161 -111664466 + MLT1H LTR MaLR 381 536 0 249 33 0 0 chr9 6199217 6199247 -111663380 + (TG)n Simple_repeat Simple_repeat 1 30 0 1739 149 3 11 chr9 6199258 6199540 -111663087 - AluJb SINE Alu -32 280 1 189 345 9 52 chr9 6200567 6200683 -111661944 + L3 LINE CR1 1458 1568 -9 28076 35 19 1 chr9 6200841 6206844 -111655783 + L1PA2 LINE L1 4 6155 0 668 239 25 50 chr9 6207110 6207311 -111655316 - MIR SINE MIR -2 260 65 203 152 0 0 chr9 6208536 6208569 -111654058 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 1963 130 52 30 chr9 6208670 6209000 -111653627 - MER1B DNA MER1_type 0 337 1 283 100 0 0 chr9 6209075 6209115 -111653512 - MLT1I LTR MaLR -272 137 98 311 273 109 0 chr9 6209124 6209307 -111653320 + L1MEc LINE L1 1599 1801 -4595 25 0 0 0 chr9 6209389 6209414 -111653213 + AT_rich Low_complexity Low_complexity 1 25 0 336 188 44 125 chr9 6209457 6209617 -111653010 + L1M4 LINE L1 4540 4686 -1460 22 70 0 0 chr9 6209842 6209885 -111652742 + AT_rich Low_complexity Low_complexity 1 43 0 473 183 83 33 chr9 6209923 6210043 -111652584 - L1MC5 LINE L1 -48 7913 7788 8986 152 29 4 chr9 6210043 6211505 -111651122 - ERVL-B1 LTR ERVL -2210 3554 2057 3205 172 66 53 chr9 6211532 6212566 -111650061 - MER21A LTR ERV1 -19 912 15 10640 187 43 18 chr9 6212601 6213355 -111649272 - ERVL-B1 LTR ERVL -3711 2053 1320 1202 210 78 49 chr9 6213355 6213740 -111648887 + MSTD LTR MaLR 1 396 0 10640 187 43 18 chr9 6213740 6214369 -111648258 - ERVL-B1 LTR ERVL -4444 1320 709 2435 131 31 5 chr9 6214369 6214757 -111647870 + MER48 LTR ERV1 1 398 0 10640 187 43 18 chr9 6214757 6215373 -111647254 - ERVL-B1 LTR ERVL -5055 709 2 1855 181 151 54 chr9 6215380 6215844 -111646783 - MLT2B1 LTR ERVL -6 514 6 1036 103 19 0 chr9 6215844 6216000 -111646627 + L1MB8 LINE L1 5737 5895 -283 322 305 59 0 chr9 6216232 6216350 -111646277 + L2 LINE L2 1879 2003 -1311 265 344 84 7 chr9 6216383 6216537 -111646090 - MLT1L LTR MaLR -67 548 383 11442 190 30 36 chr9 6216596 6218248 -111644379 + L1MB3 LINE L1 266 1926 -4456 2779 112 57 69 chr9 6218248 6218773 -111643854 - LTR44 LTR ERV1 0 519 1 2124 138 0 0 chr9 6218780 6219091 -111643536 - AluSx SINE Alu -1 311 1 11442 190 30 36 chr9 6219091 6219716 -111642911 + L1MB3 LINE L1 1932 2559 -3823 1922 149 7 3 chr9 6219716 6220005 -111642622 - AluJb SINE Alu -20 292 3 11442 190 30 36 chr9 6220005 6220727 -111641900 + L1MB3 LINE L1 2559 3284 -3098 1981 165 7 0 chr9 6220727 6221036 -111641591 + AluJb SINE Alu 1 311 -1 11442 190 30 36 chr9 6221036 6223220 -111639407 + L1MB3 LINE L1 3284 5424 -958 1720 164 0 34 chr9 6223357 6223506 -111639121 - AluJo SINE Alu -30 282 146 243 0 0 0 chr9 6223506 6223533 -111639094 + (TTCC)n Simple_repeat Simple_repeat 3 29 0 1720 164 0 34 chr9 6223533 6223675 -111638952 - AluJo SINE Alu -166 146 1 4527 165 31 39 chr9 6224144 6225106 -111637521 + L1MB3 LINE L1 5424 6374 -45 2271 98 0 10 chr9 6225106 6225411 -111637216 + AluSx SINE Alu 1 302 -10 4527 165 31 39 chr9 6225411 6225455 -111637172 + L1MB3 LINE L1 6374 6417 -2 679 264 41 86 chr9 6225627 6226207 -111636420 - L1MEd LINE L1 -4871 1248 695 180 152 0 0 chr9 6226290 6226323 -111636304 + (TCTCTG)n Simple_repeat Simple_repeat 2 34 0 375 336 69 83 chr9 6226736 6227231 -111635396 + L2 LINE L2 2589 3073 -199 2178 123 3 7 chr9 6227231 6227540 -111635087 - AluSx SINE Alu -4 308 1 375 336 69 83 chr9 6227540 6227738 -111634889 + L2 LINE L2 3073 3272 0 207 200 0 0 chr9 6228154 6228189 -111634438 + (TG)n Simple_repeat Simple_repeat 2 36 0 299 211 0 0 chr9 6228401 6228472 -111634155 - L1ME LINE L1 -303 5818 5748 837 240 159 0 chr9 6228476 6228684 -111633943 - MIR SINE MIR -21 241 1 631 280 13 0 chr9 6228775 6228925 -111633702 + MIR SINE MIR 15 166 -96 315 49 0 0 chr9 6229042 6229083 -111633544 + (A)n Simple_repeat Simple_repeat 1 41 0 254 234 106 0 chr9 6229514 6229608 -111633019 - MIR SINE MIR 0 262 159 216 0 0 0 chr9 6229647 6229671 -111632956 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 381 198 242 0 chr9 6229673 6229764 -111632863 - FLAM_A SINE Alu -17 116 4 240 273 26 39 chr9 6229764 6229841 -111632786 - MIR SINE MIR -145 117 42 211 262 0 0 chr9 6229907 6229949 -111632678 - MIR3 SINE MIR -17 191 150 317 213 12 12 chr9 6230345 6230425 -111632202 - MER116 DNA Mariner 0 80 1 1122 164 0 55 chr9 6232048 6232091 -111630536 + AluJo SINE Alu 91 135 -177 2557 43 0 3 chr9 6232091 6232391 -111630236 + AluY SINE Alu 1 299 -12 1122 164 0 55 chr9 6232391 6232566 -111630061 + AluJo SINE Alu 135 297 -15 652 242 0 0 chr9 6232768 6232896 -111629731 + FLAM_A SINE Alu 3 130 -3 236 281 36 36 chr9 6234331 6234470 -111628157 + HAL1b LINE L1 123 261 -1087 408 213 36 169 chr9 6234576 6234801 -111627826 - MLT1L LTR MaLR 0 615 421 351 308 119 6 chr9 6234936 6235095 -111627532 + MLT1J LTR MaLR 2 178 -333 1093 200 60 113 chr9 6235104 6235474 -111627153 + MLT2D LTR ERVL 1 350 -64 239 136 0 85 chr9 6235521 6235580 -111627047 + MLT2D LTR ERVL 464 517 -3 304 232 199 33 chr9 6235671 6235904 -111626723 + MLT1L LTR MaLR 240 509 -2 588 305 86 12 chr9 6235924 6236180 -111626447 - MLT1L LTR MaLR -340 275 1 2616 125 24 5 chr9 6236697 6237114 -111625513 - LTR24C LTR ERV1 -210 425 1 853 332 42 30 chr9 6237312 6237746 -111624881 + L1M3a LINE L1 14 452 -5503 16711 32 1 1 chr9 6238570 6240618 -111622009 + L1P LINE L1 1547 3595 -2551 1034 162 67 46 chr9 6241510 6241579 -111621048 + L1MA8 LINE L1 6002 6068 -223 2500 66 3 0 chr9 6241579 6241881 -111620746 + AluY SINE Alu 1 303 -8 1034 162 67 46 chr9 6241881 6242037 -111620590 + L1MA8 LINE L1 6068 6237 -54 267 31 0 0 chr9 6242037 6242069 -111620558 + (TA)n Simple_repeat Simple_repeat 1 32 0 1034 162 67 46 chr9 6242069 6242126 -111620501 + L1MA8 LINE L1 6237 6291 0 460 356 56 0 chr9 6242510 6242690 -111619937 + L2 LINE L2 2811 3000 -313 1752 48 5 0 chr9 6242704 6242910 -111619717 - AluY SINE Alu -13 298 92 333 322 59 8 chr9 6243032 6243150 -111619477 + MIR3 SINE MIR 10 133 -75 2269 105 7 0 chr9 6243510 6243816 -111618811 + AluSp SINE Alu 1 308 -5 366 183 0 0 chr9 6244003 6244074 -111618553 + (CA)n Simple_repeat Simple_repeat 2 72 0 193 259 65 111 chr9 6244150 6244258 -111618369 + MER5A DNA MER1_type 65 167 -22 285 222 43 103 chr9 6244345 6244462 -111618165 + MIR SINE MIR 71 180 -82 341 204 46 125 chr9 6244672 6244824 -111617803 - MER112 DNA MER1_type -1 259 120 2552 168 95 6 chr9 6244848 6245353 -111617274 - MER44D DNA MER2_type 0 605 1 491 138 38 0 chr9 6245581 6245661 -111616966 + Tigger7 DNA MER2_type 2357 2439 -48 389 365 28 38 chr9 6246132 6246385 -111616242 - MIR SINE MIR -2 260 8 308 281 94 23 chr9 6247511 6247639 -111614988 - MIR SINE MIR -20 242 106 212 267 0 40 chr9 6247851 6247926 -111614701 - L2 LINE L2 -6 3307 3236 * 328 233 165 0 chr9 6247922 6248025 -111614602 + MIR SINE MIR 13 132 -130 1077 90 0 0 chr9 6248135 6248269 -111614358 - AluSq/x SINE Alu -178 134 1 22 0 0 0 chr9 6248392 6248414 -111614213 + AT_rich Low_complexity Low_complexity 1 22 0 28 48 0 0 chr9 6249784 6249826 -111612801 + AT_rich Low_complexity Low_complexity 1 42 0 505 321 65 11 chr9 6249884 6250068 -111612559 + MIR SINE MIR 1 194 -68 1532 145 4 4 chr9 6250662 6250890 -111611737 - AluSx SINE Alu -84 228 1 1585 137 8 16 chr9 6251038 6251293 -111611334 + AluSc SINE Alu 1 253 -56 191 257 119 79 chr9 6253407 6253508 -111609119 - MIR SINE MIR -147 115 11 482 247 100 32 chr9 6253714 6253924 -111608703 - MIR SINE MIR 0 262 38 4085 241 75 21 chr9 6254067 6255692 -111606935 + L1M3f LINE L1 539 2242 -4086 2250 128 88 7 chr9 6255692 6256100 -111606527 + L1MA4 LINE L1 5849 6289 -11 477 255 101 64 chr9 6256258 6256542 -111606085 + L1M3f LINE L1 3255 3527 -2801 1793 167 10 10 chr9 6256542 6256842 -111605785 + AluJo SINE Alu 1 300 -12 236 77 26 0 chr9 6256842 6256881 -111605746 + (TA)n Simple_repeat Simple_repeat 2 41 0 477 255 101 64 chr9 6256881 6257007 -111605620 + L1M3f LINE L1 3526 3672 -2656 800 177 6 55 chr9 6257021 6257202 -111605425 + MLT1D LTR MaLR 17 188 -317 2528 165 19 39 chr9 6257202 6257717 -111604910 + MLT1D LTR MaLR 1 505 0 40618 35 23 1 chr9 6257745 6263765 -111598862 - L1PA3 LINE L1 0 6155 3 475 275 105 18 chr9 6263870 6264204 -111598423 + L1M3f LINE L1 3802 4164 -2164 592 337 102 38 chr9 6264251 6264786 -111597841 - L2 LINE L2 -2 3270 2703 365 242 25 25 chr9 6265044 6265164 -111597463 + LTR33 LTR ERVL 402 521 0 518 276 19 26 chr9 6265174 6265330 -111597297 - L2 LINE L2 -596 2718 2564 1504 173 15 11 chr9 6265338 6265739 -111596888 + MER76 LTR ERV 1 466 -222 358 164 45 0 chr9 6265783 6265850 -111596777 + MER76 LTR ERV 590 659 -29 638 312 41 54 chr9 6265851 6266293 -111596334 - L2 LINE L2 -744 2570 2135 180 250 0 0 chr9 6266426 6266462 -111596165 + L2 LINE L2 3220 3255 -17 322 119 237 0 chr9 6266832 6266891 -111595736 - THE1B LTR MaLR 0 375 303 1027 146 0 0 chr9 6266893 6267074 -111595553 + AluSg/x SINE Alu 136 316 0 219 167 0 0 chr9 6267094 6267136 -111595491 + GA-rich Low_complexity Low_complexity 4 45 0 2098 116 0 0 chr9 6267149 6267451 -111595176 - THE1B LTR MaLR -62 302 1 286 323 222 35 chr9 6267658 6267856 -111594771 + MIR SINE MIR 20 254 -8 1321 174 0 21 chr9 6268646 6268882 -111593745 + AluJo SINE Alu 70 300 -12 202 267 0 0 chr9 6269237 6269282 -111593345 + (CAG)n Simple_repeat Simple_repeat 3 47 0 628 213 90 62 chr9 6269503 6269714 -111592913 + MIR SINE MIR 40 256 -6 1591 151 7 60 chr9 6270102 6270422 -111592205 - AluJb SINE Alu 0 304 1 264 353 88 0 chr9 6270663 6270799 -111591828 - MIR3 SINE MIR -5 203 56 235 286 0 16 chr9 6271137 6271200 -111591427 - MIR SINE MIR -127 81 20 1688 148 20 67 chr9 6271638 6272044 -111590583 - L1MB8 LINE L1 -6 6172 5786 1456 173 24 0 chr9 6272047 6272342 -111590285 - L1MB8 LINE L1 -538 5646 5345 1186 277 54 12 chr9 6272349 6272851 -111589776 - L1M4c LINE L1 -4738 1646 1124 1625 256 113 35 chr9 6272855 6273389 -111589238 + L1ME LINE L1 89 580 -5500 2064 144 3 0 chr9 6273389 6273680 -111588947 + AluSx SINE Alu 1 292 -20 1625 256 113 35 chr9 6273680 6274326 -111588301 + L1ME LINE L1 580 1362 -4718 2833 6 15 3 chr9 6274349 6274677 -111587950 + L1PA3 LINE L1 5824 6155 0 183 42 0 0 chr9 6274745 6274769 -111587858 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 334 215 47 0 chr9 6274777 6274884 -111587743 + L1ME LINE L1 1403 1514 -4566 2495 191 57 78 chr9 6275496 6276202 -111586425 - LTR8 LTR ERV1 0 691 1 1939 135 49 0 chr9 6277395 6277683 -111584944 + AluSx SINE Alu 5 306 -6 283 282 18 0 chr9 6278184 6278294 -111584333 + LTR33 LTR ERVL 4 115 -406 573 238 42 0 chr9 6278707 6278850 -111583777 + MLT1D LTR MaLR 355 503 -2 1629 115 125 16 chr9 6279897 6280202 -111582425 - MER44D DNA MER2_type -1 608 1 3676 162 19 0 chr9 6281384 6282032 -111580595 + L1MB5 LINE L1 5515 6174 0 4356 213 36 30 chr9 6282064 6282452 -111580175 - L1M4 LINE L1 -649 6023 5639 1578 194 40 0 chr9 6282452 6282730 -111579897 + AluJb SINE Alu 9 297 -15 4356 213 36 30 chr9 6282730 6283709 -111578918 - L1M4 LINE L1 -1033 5639 4648 207 0 0 0 chr9 6283709 6283732 -111578895 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 4356 213 36 30 chr9 6283732 6283799 -111578828 - L1M4 LINE L1 -2024 4648 4583 29825 94 9 8 chr9 6283803 6289227 -111573400 + L1PA7 LINE L1 1377 7588 -4 203 0 37 0 chr9 6289253 6289280 -111573347 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1346 245 6 14 chr9 6289288 6289635 -111572992 - L1M4 LINE L1 -2046 4598 4255 4432 235 54 43 chr9 6289638 6291634 -111570993 - L1M4 LINE L1 -4656 1990 5 476 343 78 12 chr9 6291659 6291980 -111570647 - L1MEc LINE L1 -3404 2811 2470 1529 188 18 25 chr9 6291991 6292309 -111570318 - AluJo SINE Alu 0 319 4 3041 93 32 5 chr9 6292310 6292742 -111569885 - MLT2A1 LTR ERVL 0 444 1 550 322 70 36 chr9 6292751 6293251 -111569376 - L1MEc LINE L1 -4016 2380 1864 234 0 0 0 chr9 6294153 6294179 -111568448 + (A)n Simple_repeat Simple_repeat 1 26 0 2332 64 0 3 chr9 6294310 6294619 -111568008 + AluY SINE Alu 1 308 0 612 242 80 58 chr9 6294650 6294988 -111567639 + L1MEc LINE L1 2179 2492 -3723 1199 165 5 15 chr9 6296658 6296885 -111565742 - AluJo SINE Alu 0 309 85 1967 127 0 43 chr9 6296997 6297296 -111565331 + AluSq SINE Alu 7 292 -21 3261 136 71 43 chr9 6297423 6298101 -111564526 - LTR8A LTR ERV1 -30 697 1 521 184 31 17 chr9 6299122 6299482 -111563145 + (TA)n Simple_repeat Simple_repeat 1 365 0 421 301 35 60 chr9 6300047 6300246 -111562381 + MIR SINE MIR 2 195 -67 355 240 123 68 chr9 6300315 6300461 -111562166 - MIR SINE MIR -75 187 34 228 67 0 0 chr9 6301279 6301309 -111561318 + (TTA)n Simple_repeat Simple_repeat 2 31 0 1762 178 21 0 chr9 6301311 6301592 -111561035 - AluJb SINE Alu -25 287 1 366 284 24 95 chr9 6303444 6303655 -111558972 - L1ME3A LINE L1 -1 6169 5974 595 280 111 18 chr9 6304256 6304588 -111558039 - MLT1L LTR MaLR 0 615 253 526 195 0 70 chr9 6305939 6306067 -111556560 + MIR SINE MIR 33 151 -57 1143 209 0 30 chr9 6306256 6306486 -111556141 - AluJb SINE Alu -9 303 81 1363 294 71 30 chr9 6306487 6306539 -111556088 - L1MEd LINE L1 -4865 1254 1206 1748 168 0 25 chr9 6306539 6306854 -111555773 - AluJo SINE Alu -5 307 1 1363 294 71 30 chr9 6306854 6307811 -111554816 - L1MEd LINE L1 -4913 1206 274 841 242 11 0 chr9 6308514 6308692 -111553935 + MIR SINE MIR 79 258 -4 717 231 81 0 chr9 6308692 6308865 -111553762 + AluJo SINE Alu 120 306 -6 1800 140 39 3 chr9 6309113 6309399 -111553228 + AluJo SINE Alu 1 296 -16 260 245 0 0 chr9 6309716 6309769 -111552858 - MIR SINE MIR -59 149 97 399 339 133 33 chr9 6310243 6310641 -111551986 - L2 LINE L2 -16 3256 2819 292 311 152 7 chr9 6311399 6311550 -111551077 + MIR SINE MIR 36 208 -54 431 358 33 30 chr9 6311584 6311916 -111550711 + L2 LINE L2 2559 2891 -423 4747 222 93 18 chr9 6312052 6313135 -111549492 - L1M4 LINE L1 -1825 4321 3321 231 88 0 0 chr9 6313135 6313169 -111549458 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 4747 222 93 18 chr9 6313169 6313519 -111549108 - L1M4 LINE L1 -2825 3321 2999 1822 166 0 10 chr9 6313519 6313821 -111548806 - AluSx SINE Alu -13 299 1 4747 222 93 18 chr9 6313821 6314055 -111548572 - L1M4 LINE L1 -3147 2999 2528 1779 161 3 17 chr9 6314294 6314592 -111548035 + AluJb SINE Alu 1 294 -18 457 299 128 9 chr9 6315233 6315444 -111547183 - MIR SINE MIR -7 255 20 222 317 70 75 chr9 6315983 6316169 -111546458 - L2 LINE L2 -995 2319 2135 616 199 93 7 chr9 6316273 6316424 -111546203 - LTR53 LTR ERVL -61 458 295 453 159 0 0 chr9 6316771 6316840 -111545787 - AluJ/FLAM SINE Alu -243 69 1 1182 267 63 13 chr9 6316857 6317400 -111545227 - L1M4 LINE L1 -2400 3746 3177 35 0 0 0 chr9 6317404 6317439 -111545188 + AT_rich Low_complexity Low_complexity 1 35 0 1742 187 52 3 chr9 6317547 6317895 -111544732 + MLT1A1 LTR MaLR 1 365 0 230 121 0 0 chr9 6318136 6318169 -111544458 - L2 LINE L2 -16 3256 3224 309 214 87 19 chr9 6318245 6318348 -111544279 - MLT1J LTR MaLR -33 478 369 334 265 120 56 chr9 6318361 6318459 -111544168 - LTR16A1 LTR ERVL 0 457 367 195 100 0 0 chr9 6318459 6318489 -111544138 + (CAGGG)n Simple_repeat Simple_repeat 1 30 0 334 265 120 56 chr9 6318489 6318624 -111544003 - LTR16A1 LTR ERVL -90 367 209 2105 123 3 7 chr9 6318899 6319192 -111543435 - AluSx SINE Alu -16 296 5 330 234 34 88 chr9 6319235 6319467 -111543160 - MLT1J LTR MaLR -200 311 54 247 275 87 81 chr9 6319562 6319711 -111542916 - MIR SINE MIR -58 150 1 364 99 0 0 chr9 6319746 6319808 -111542819 - MLT2B3 LTR ERVL 0 520 403 234 81 0 0 chr9 6319808 6319845 -111542782 + (TA)n Simple_repeat Simple_repeat 1 37 0 227 104 0 0 chr9 6319852 6319900 -111542727 - LTR66 LTR ERVL -169 441 394 2019 199 17 60 chr9 6319905 6319919 -111542708 - MLT2B3 LTR ERVL -44 500 487 459 0 0 0 chr9 6319919 6319970 -111542657 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 2019 199 17 60 chr9 6319970 6320389 -111542238 - MLT2B3 LTR ERVL -57 487 115 1939 154 3 3 chr9 6320389 6320694 -111541933 + AluJb SINE Alu 1 305 -7 2019 199 17 60 chr9 6320694 6320805 -111541822 - MLT2B3 LTR ERVL -429 115 1 1983 138 0 7 chr9 6321160 6321449 -111541178 + AluSg SINE Alu 1 287 -23 1337 87 0 0 chr9 6321701 6321885 -111540742 - L1PA14 LINE L1 0 6161 5978 1725 84 0 24 chr9 6321905 6322156 -111540471 - L1PA14 LINE L1 -291 5870 5626 204 295 103 13 chr9 6322759 6322837 -111539790 - L2 LINE L2 -21 3251 3167 38914 69 4 3 chr9 6322960 6324794 -111537833 + L1PA5 LINE L1 11 1841 -4313 2285 52 41 3 chr9 6324794 6325084 -111537543 - AluY SINE Alu -10 301 1 38914 69 4 3 chr9 6325084 6329383 -111533244 + L1PA5 LINE L1 1841 6152 -2 234 304 29 10 chr9 6331687 6331789 -111530838 + MIR SINE MIR 28 131 -131 425 222 22 0 chr9 6331826 6331916 -111530711 + MLT1H LTR MaLR 458 549 0 322 289 10 10 chr9 6331920 6332024 -111530603 + MIR SINE MIR 159 262 0 533 177 218 7 chr9 6332505 6332652 -111529975 - MER5A DNA MER1_type 0 189 12 637 246 191 24 chr9 6333286 6333627 -111529000 + MLT1J LTR MaLR 107 504 -7 25 0 0 0 chr9 6334050 6334075 -111528552 + AT_rich Low_complexity Low_complexity 1 25 0 331 266 24 32 chr9 6334199 6334323 -111528304 - MER117 DNA MER1_type -69 128 6 1952 154 23 0 chr9 6335350 6335656 -111526971 - AluSq SINE Alu 0 313 1 22 0 0 0 chr9 6335779 6335801 -111526826 + AT_rich Low_complexity Low_complexity 1 22 0 233 237 21 10 chr9 6336558 6336655 -111525972 - L1ME LINE L1 -193 5928 5831 850 213 66 92 chr9 6337031 6337378 -111525249 - MER46C DNA MER2_type 0 338 1 646 258 30 39 chr9 6337516 6337726 -111524901 - MIR SINE MIR -3 259 52 1143 232 77 16 chr9 6338462 6338535 -111524092 - MSTD LTR MaLR 0 396 329 1930 158 6 19 chr9 6338535 6338846 -111523781 + AluJo SINE Alu 1 307 -5 1143 232 77 16 chr9 6338846 6339082 -111523545 - MSTD LTR MaLR -67 329 68 739 62 0 0 chr9 6339082 6339178 -111523449 + AluSc SINE Alu 212 307 -2 432 168 47 0 chr9 6339188 6339277 -111523350 - MSTD LTR MaLR -344 89 1 680 284 48 141 chr9 6340044 6340494 -111522133 + L2 LINE L2 1950 2440 -874 1756 196 17 63 chr9 6340494 6340830 -111521797 - MSTD LTR MaLR -1 395 80 2363 103 0 0 chr9 6340830 6341132 -111521495 - AluSc SINE Alu -7 302 1 1756 196 17 63 chr9 6341132 6341209 -111521418 - MSTD LTR MaLR -316 80 1 680 284 48 141 chr9 6341209 6341321 -111521306 + L2 LINE L2 2440 2561 -753 2473 84 0 3 chr9 6341321 6341632 -111520995 - AluY SINE Alu 0 311 2 680 284 48 141 chr9 6341632 6341991 -111520636 + L2 LINE L2 2561 2786 -528 653 302 21 8 chr9 6342024 6342259 -111520368 - Charlie8 DNA MER1_type -2179 238 1 1452 167 105 0 chr9 6342780 6343074 -111519553 + MER44D DNA MER2_type 9 603 -6 2024 121 11 3 chr9 6343759 6344041 -111518586 + AluSx SINE Alu 1 284 -28 180 0 0 0 chr9 6344045 6344065 -111518562 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1982 155 39 62 chr9 6344234 6344619 -111518008 + MSTB1 LTR MaLR 3 378 -54 2813 95 87 27 chr9 6344619 6345103 -111517524 + MER75 DNA T2_type 2 514 0 1982 155 39 62 chr9 6345103 6345155 -111517472 + MSTB1 LTR MaLR 378 430 -2 184 287 58 35 chr9 6345176 6345263 -111517364 + L2 LINE L2 3179 3267 -5 5703 124 32 13 chr9 6345903 6346911 -111515716 + Tigger3b DNA MER2_type 7 1033 -198 1912 149 56 20 chr9 6346915 6347305 -111515322 + MER4E LTR ERV1 371 774 -5 268 288 105 13 chr9 6347331 6347484 -111515143 + L1MC4a LINE L1 6415 6581 -1227 * 402 230 178 0 chr9 6347481 6347616 -111515011 + L1MC4 LINE L1 6769 6927 -1115 1239 262 67 80 chr9 6347664 6348317 -111514310 - LTR19C LTR ERV1 0 779 135 279 214 0 0 chr9 6348373 6348443 -111514184 + L1MC4 LINE L1 7154 7223 -819 418 297 110 7 chr9 6349104 6349249 -111513378 - MIR3 SINE MIR -15 193 34 285 303 19 0 chr9 6349678 6349833 -111512794 - MER103 DNA DNA 0 166 9 2130 120 3 13 chr9 6350520 6350828 -111511799 - AluSx SINE Alu -7 305 1 233 167 17 0 chr9 6350996 6351056 -111511571 - L1ME4a LINE L1 -1 6120 6060 532 290 80 35 chr9 6351072 6351354 -111511273 - L1ME4a LINE L1 -139 5982 5714 447 87 0 0 chr9 6351354 6351423 -111511204 + (TG)n Simple_repeat Simple_repeat 2 70 0 532 290 80 35 chr9 6351423 6351715 -111510912 - L1ME4a LINE L1 -407 5714 5382 1547 198 13 31 chr9 6352070 6352388 -111510239 + AluJo SINE Alu 1 312 0 417 364 18 49 chr9 6352478 6352764 -111509863 - L2 LINE L2 -493 2821 2545 266 259 52 0 chr9 6352846 6352904 -111509723 - MIR SINE MIR -116 92 32 274 354 137 13 chr9 6353033 6353412 -111509215 - L2 LINE L2 -903 2411 1986 666 176 14 131 chr9 6353625 6353846 -111508781 + MIR SINE MIR 68 262 0 1059 94 50 28 chr9 6354249 6354429 -111508198 + L1MB3 LINE L1 5999 6182 -1 612 242 80 58 chr9 6356215 6356553 -111506074 - L1MEc LINE L1 -3723 2423 2110 235 0 0 0 chr9 6356584 6356610 -111506017 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2405 50 0 0 chr9 6356610 6356892 -111505735 - AluY SINE Alu -29 282 1 679 198 93 0 chr9 6356895 6357057 -111505570 - L1 LINE L1 -1800 4346 4170 389 301 46 53 chr9 6358965 6359208 -111503419 - L1 LINE L1 -2791 3355 3112 2176 127 7 0 chr9 6359208 6359515 -111503112 - AluSx SINE Alu -3 309 1 389 301 46 53 chr9 6359515 6359636 -111502991 - L1 LINE L1 -3034 3112 2992 1715 209 64 43 chr9 6359636 6360104 -111502523 + MER31A LTR ERV1 4 481 -4 389 301 46 53 chr9 6360104 6360699 -111501928 - L1 LINE L1 -3154 2992 2402 297 73 0 0 chr9 6360774 6360815 -111501812 - HERVL LTR ERVL -4275 1379 1339 6038 138 16 16 chr9 6360816 6362853 -111499774 + L1MA3 LINE L1 4266 6304 -1 2193 96 0 51 chr9 6363173 6363487 -111499140 - AluSc SINE Alu -11 298 1 2051 118 0 0 chr9 6363693 6363964 -111498663 - AluSx SINE Alu -18 294 24 29 60 0 0 chr9 6364104 6364154 -111498473 + AT_rich Low_complexity Low_complexity 1 50 0 3201 88 0 0 chr9 6364169 6364610 -111498017 + L1P LINE L1 1 441 -5705 2132 85 4 4 chr9 6366072 6366343 -111496284 - AluY SINE Alu -40 271 1 1306 166 45 15 chr9 6367267 6367616 -111495011 - L1MC/D LINE L1 -567 5675 5290 368 272 158 16 chr9 6368010 6368194 -111494433 + MIR SINE MIR 49 258 -4 2149 144 0 0 chr9 6368220 6368519 -111494108 + AluSx SINE Alu 1 299 -13 538 191 122 63 chr9 6369069 6369258 -111493369 + MIR SINE MIR 13 212 -50 841 161 0 15 chr9 6369771 6369908 -111492719 - FLAM_C SINE Alu -8 135 1 558 280 58 13 chr9 6370394 6370619 -111492008 + AluSg/x SINE Alu 66 300 -12 2315 96 7 0 chr9 6370779 6371080 -111491547 + AluSp SINE Alu 2 304 -9 5456 117 56 32 chr9 6371130 6371605 -111491022 - Tigger3b DNA MER2_type -1797 1231 769 2249 109 0 0 chr9 6371605 6371899 -111490728 - AluSx SINE Alu -17 295 2 5456 117 56 32 chr9 6371899 6372160 -111490467 - Tigger3b DNA MER2_type -2259 769 516 1788 154 7 30 chr9 6372160 6372459 -111490168 - AluJb SINE Alu -20 292 1 5456 117 56 32 chr9 6372459 6372639 -111489988 - Tigger3b DNA MER2_type -2512 516 284 2045 126 0 0 chr9 6372639 6372953 -111489674 + AluSx SINE Alu 1 314 0 5456 117 56 32 chr9 6372953 6373050 -111489577 - Tigger3b DNA MER2_type -2744 284 191 358 143 0 0 chr9 6373048 6373104 -111489523 - AluS SINE Alu -246 57 2 * 684 259 153 35 chr9 6373452 6373807 -111488820 + L1ME4a LINE L1 5515 5956 -165 1528 174 0 33 chr9 6373807 6374083 -111488544 + AluJo SINE Alu 1 267 -45 684 259 153 35 chr9 6374083 6374264 -111488363 + L1ME4a LINE L1 5956 6114 -7 2744 149 30 20 chr9 6375300 6375838 -111486789 + L1MA4 LINE L1 5750 6292 -8 21 0 0 0 chr9 6375838 6375859 -111486768 + AT_rich Low_complexity Low_complexity 1 21 0 21 82 0 0 chr9 6376664 6376713 -111485914 + AT_rich Low_complexity Low_complexity 1 49 0 2177 130 3 0 chr9 6376851 6377159 -111485468 - AluSx SINE Alu -3 309 1 410 247 55 22 chr9 6377568 6377750 -111484877 - L1MC5 LINE L1 -444 7517 7330 649 208 29 29 chr9 6377765 6377938 -111484689 + MER58B DNA MER1_type 169 341 0 1223 225 143 54 chr9 6377950 6378678 -111483949 - L1MC5 LINE L1 -630 7331 6543 502 221 52 100 chr9 6379384 6379615 -111483012 + L1ME1 LINE L1 5944 6163 -1 594 200 0 17 chr9 6379864 6379979 -111482648 - MLT1F LTR MaLR -85 482 370 763 256 29 33 chr9 6379991 6380233 -111482394 - MLT1F LTR MaLR -301 241 1 1916 114 0 11 chr9 6380604 6380867 -111481760 + AluSx SINE Alu 32 291 -21 2301 103 0 3 chr9 6380867 6381159 -111481468 + AluSp SINE Alu 1 291 -22 255 343 113 64 chr9 6381570 6381979 -111480648 + L2 LINE L2 2596 3047 -225 181 311 16 0 chr9 6382034 6382095 -111480532 - MIR SINE MIR -21 241 180 1454 295 185 35 chr9 6382541 6383677 -111478950 + L2 LINE L2 1483 2788 -526 2195 84 38 3 chr9 6385416 6385703 -111476924 - AluY SINE Alu -14 297 1 1424 181 55 66 chr9 6385774 6385867 -111476760 + MER2 DNA MER2_type 1 94 -250 2194 120 3 0 chr9 6385867 6386166 -111476461 + AluSx SINE Alu 6 305 -7 1424 181 55 66 chr9 6386166 6386420 -111476207 + MER2 DNA MER2_type 94 344 0 25 51 0 0 chr9 6386450 6386489 -111476138 + AT_rich Low_complexity Low_complexity 1 39 0 2414 94 3 0 chr9 6386499 6386807 -111475820 - AluSp SINE Alu -4 309 1 1334 174 51 68 chr9 6386880 6387174 -111475453 - AluJo SINE Alu -3 309 21 228 321 0 0 chr9 6387305 6387358 -111475269 + C-rich Low_complexity Low_complexity 1 53 0 1104 195 73 41 chr9 6387358 6387604 -111475023 - AluJb SINE Alu -58 254 1 282 240 145 45 chr9 6387605 6387677 -111474950 - HAL1 LINE L1 -159 2348 2285 2511 80 3 0 chr9 6387677 6387988 -111474639 - AluSp SINE Alu -1 312 1 282 240 145 45 chr9 6387988 6388115 -111474512 - HAL1 LINE L1 -222 2285 2129 315 253 33 11 chr9 6388278 6388369 -111474258 - L2 LINE L2 -845 2469 2377 873 81 15 37 chr9 6388578 6388714 -111473913 + FLAM_C SINE Alu 1 133 0 188 377 124 22 chr9 6388858 6389359 -111473268 - L2 LINE L2 -383 2931 2380 2054 136 3 10 chr9 6390073 6390251 -111472376 - AluSx SINE Alu 0 312 135 2086 151 0 0 chr9 6390251 6390562 -111472065 - AluSq SINE Alu -2 311 1 2054 136 3 10 chr9 6390562 6390693 -111471934 - AluSx SINE Alu -177 135 5 356 143 14 0 chr9 6390784 6390854 -111471773 - L1MD2 LINE L1 0 6359 6289 1921 141 0 35 chr9 6390854 6391167 -111471460 + AluJb SINE Alu 1 302 -10 198 0 0 0 chr9 6391609 6391631 -111470996 + (T)n Simple_repeat Simple_repeat 1 22 0 2015 137 0 3 chr9 6391791 6392084 -111470543 + AluSx SINE Alu 1 292 -20 21 0 0 0 chr9 6392279 6392300 -111470327 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr9 6393331 6393368 -111469259 + AT_rich Low_complexity Low_complexity 1 37 0 6861 112 12 9 chr9 6395313 6396745 -111465882 + L1MA1 LINE L1 4869 6302 0 1879 218 95 57 chr9 6396762 6397809 -111464818 + L1MD2 LINE L1 5241 6344 -15 2378 95 0 3 chr9 6397812 6398116 -111464511 + AluSx SINE Alu 1 303 -9 1566 207 111 53 chr9 6398838 6399350 -111463277 - MLT1F LTR MaLR 0 542 1 1568 161 4 12 chr9 6399464 6399712 -111462915 + AluJb SINE Alu 1 246 -66 941 285 108 5 chr9 6399794 6400163 -111462464 - MLT1I LTR MaLR -2 407 1 575 225 202 19 chr9 6400218 6400525 -111462102 + L1ME LINE L1 5452 5814 -350 317 180 100 80 chr9 6401385 6401535 -111461092 + L1MC5 LINE L1 7246 7398 -563 2609 23 0 0 chr9 6401662 6401962 -111460665 - AluYa5 SINE Alu -11 300 1 304 218 149 0 chr9 6402147 6402234 -111460393 - L1ME LINE L1 -385 5736 5637 22 35 0 0 chr9 6402275 6402304 -111460323 + AT_rich Low_complexity Low_complexity 1 29 0 850 236 6 0 chr9 6402427 6402609 -111460018 + MER58A DNA MER1_type 42 224 0 21 0 0 0 chr9 6402611 6402632 -111459995 + AT_rich Low_complexity Low_complexity 1 21 0 2213 115 0 0 chr9 6402927 6403215 -111459412 + AluSg SINE Alu 1 288 -22 2097 119 7 3 chr9 6403290 6403585 -111459042 + AluSp SINE Alu 1 296 -17 1841 158 3 3 chr9 6403761 6404058 -111458569 - AluSx SINE Alu -13 299 3 22 0 0 0 chr9 6404060 6404082 -111458545 + AT_rich Low_complexity Low_complexity 1 22 0 732 256 105 49 chr9 6404142 6405094 -111457533 - L1ME LINE L1 -402 5751 4742 301 327 99 6 chr9 6405190 6405502 -111457125 - L1ME LINE L1 -1800 4329 3989 746 263 161 12 chr9 6405510 6406027 -111456600 - L1ME LINE L1 -2381 3748 3155 1040 118 0 0 chr9 6406409 6406545 -111456082 + AluSq/x SINE Alu 1 136 -176 2222 127 0 6 chr9 6406546 6406860 -111455767 + AluSx SINE Alu 1 312 0 673 259 73 54 chr9 6407022 6407295 -111455332 + L2 LINE L2 2864 3145 -168 1719 203 97 32 chr9 6407295 6407769 -111454858 - MLT1D LTR MaLR 0 505 1 673 259 73 54 chr9 6407769 6407808 -111454819 + L2 LINE L2 3145 3182 -131 198 0 0 0 chr9 6407884 6407906 -111454721 + (T)n Simple_repeat Simple_repeat 1 22 0 252 339 15 31 chr9 6408025 6408155 -111454472 - L1ME LINE L1 -5553 566 439 562 248 29 79 chr9 6409592 6409839 -111452788 - L1MC5 LINE L1 -37 7924 7691 1613 205 0 3 chr9 6409839 6410136 -111452491 + AluJb SINE Alu 1 296 -16 562 248 29 79 chr9 6410136 6410166 -111452461 - L1MC5 LINE L1 -270 7691 7661 255 221 91 0 chr9 6410213 6410290 -111452337 - U13 snRNA snRNA -2 102 19 32 86 0 0 chr9 6410625 6410706 -111451921 + AT_rich Low_complexity Low_complexity 1 81 0 180 262 119 32 chr9 6410758 6410884 -111451743 - MIR SINE MIR -55 153 17 216 163 0 0 chr9 6411003 6411046 -111451581 + A-rich Low_complexity Low_complexity 1 43 0 304 204 11 45 chr9 6411253 6411341 -111451286 + MIR SINE MIR 96 180 -82 223 57 86 0 chr9 6411442 6411477 -111451150 + L2 LINE L2 3017 3054 -259 189 0 0 0 chr9 6412070 6412091 -111450536 + (TC)n Simple_repeat Simple_repeat 2 22 0 2293 114 0 3 chr9 6412446 6412753 -111449874 + AluSx SINE Alu 2 307 -5 23 33 0 0 chr9 6413165 6413195 -111449432 + AT_rich Low_complexity Low_complexity 1 30 0 2243 116 0 0 chr9 6413252 6413554 -111449073 + AluSg SINE Alu 2 303 -7 1881 138 0 28 chr9 6413565 6413856 -111448771 + AluSx SINE Alu 1 283 -29 2387 103 0 0 chr9 6414451 6414753 -111447874 + AluSq SINE Alu 1 302 -11 26 30 0 0 chr9 6414768 6414801 -111447826 + AT_rich Low_complexity Low_complexity 1 33 0 258 280 49 21 chr9 6414965 6415108 -111447519 + L1M4 LINE L1 4599 4745 -1401 2733 167 5 92 chr9 6415109 6415683 -111446944 - MER44D DNA MER2_type 0 605 27 1468 213 119 20 chr9 6415693 6416140 -111446487 + L1M4 LINE L1 4744 5234 -912 387 291 17 26 chr9 6416623 6416740 -111445887 + LTR67 LTR ERVL 432 547 -10 420 129 0 0 chr9 6417008 6417070 -111445557 + AluSg/x SINE Alu 135 196 -114 2010 116 0 34 chr9 6417070 6417362 -111445265 + AluSx SINE Alu 23 304 -8 450 131 7 189 chr9 6418021 6418105 -111444522 + MER5A DNA MER1_type 1 46 -143 1965 103 41 0 chr9 6418105 6418376 -111444251 + AluSx SINE Alu 31 312 0 450 131 7 189 chr9 6418376 6418444 -111444183 + MER5A DNA MER1_type 46 125 -64 302 233 103 43 chr9 6418649 6418765 -111443862 + MER117 DNA MER1_type 53 175 -22 1199 128 0 22 chr9 6418932 6419112 -111443515 + AluSg/x SINE Alu 132 307 -3 440 227 0 42 chr9 6419130 6419249 -111443378 - MER5B DNA MER1_type -64 114 1 968 181 39 6 chr9 6419257 6419439 -111443188 + MER5A DNA MER1_type 2 189 0 1779 171 6 16 chr9 6420013 6420328 -111442299 - MLT1A1 LTR MaLR 0 365 54 1363 106 5 0 chr9 6420334 6420523 -111442104 - AluSq SINE Alu -1 312 123 253 278 195 73 chr9 6421210 6421366 -111441261 + MIR SINE MIR 33 221 -41 2197 115 3 13 chr9 6421366 6421678 -111440949 + AluSq SINE Alu 1 309 -4 253 278 195 73 chr9 6421678 6421726 -111440901 + MIR SINE MIR 221 262 0 495 273 67 70 chr9 6421963 6422191 -111440436 + MLT1J LTR MaLR 1 229 -282 2426 97 0 3 chr9 6422191 6422501 -111440126 - AluSx SINE Alu -3 309 1 495 273 67 70 chr9 6422501 6422628 -111439999 + MLT1J LTR MaLR 229 355 -156 2193 125 3 0 chr9 6424028 6424324 -111438303 + AluSp SINE Alu 1 297 -16 2156 67 103 0 chr9 6424382 6424664 -111437963 + AluY SINE Alu 1 311 0 418 298 123 21 chr9 6426763 6427186 -111435441 + L1ME4a LINE L1 5635 6100 -21 200 139 0 28 chr9 6427271 6427307 -111435320 - MIR SINE MIR -110 152 118 1679 177 42 0 chr9 6427482 6427770 -111434857 - AluJb SINE Alu -12 300 1 201 255 0 0 chr9 6427841 6427888 -111434739 - MER5A DNA MER1_type 0 189 143 253 317 67 29 chr9 6427929 6427948 -111434679 - L1MC4 LINE L1 -1 8041 8024 1894 155 3 20 chr9 6427948 6428245 -111434382 + AluJb SINE Alu 1 292 -20 253 317 67 29 chr9 6428245 6428433 -111434194 - L1MC4 LINE L1 -18 8024 7826 404 202 1 0 chr9 6428475 6428557 -111434070 - L1ME2 LINE L1 -22 6140 6058 243 304 89 0 chr9 6428674 6428786 -111433841 + MER5A DNA MER1_type 43 164 -25 243 282 39 13 chr9 6428718 6428796 -111433831 - MER5A DNA MER1_type -85 104 25 251 109 43 0 chr9 6428991 6429037 -111433590 - L2 LINE L2 -2 3311 3264 2053 127 0 3 chr9 6429647 6429930 -111432697 + AluSx SINE Alu 1 282 -30 21 0 0 0 chr9 6429957 6429978 -111432649 + AT_rich Low_complexity Low_complexity 1 21 0 227 132 26 0 chr9 6431286 6431324 -111431303 - Tigger4(Zombi) DNA MER2_type -2646 85 47 743 210 21 0 chr9 6431327 6431470 -111431157 + AluSq/x SINE Alu 2 147 -166 565 143 0 11 chr9 6431470 6431561 -111431066 + AluJb SINE Alu 210 299 -3 1991 136 3 17 chr9 6431992 6432293 -111430334 + AluSx SINE Alu 1 297 -15 2367 85 0 0 chr9 6432411 6432704 -111429923 + AluSc SINE Alu 1 293 -16 1800 138 14 18 chr9 6432704 6432987 -111429640 - AluJb SINE Alu -28 284 3 1954 167 3 3 chr9 6433055 6433361 -111429266 + AluJb SINE Alu 1 306 -6 1381 185 8 0 chr9 6433501 6433739 -111428888 + AluJo SINE Alu 56 295 -17 210 239 120 35 chr9 6435373 6435515 -111427112 + L2 LINE L2 2725 2878 -436 2321 117 0 0 chr9 6435837 6436146 -111426481 + AluSx SINE Alu 1 309 -3 255 273 112 25 chr9 6437379 6437540 -111425087 - MER5B DNA MER1_type 0 178 4 1973 128 3 72 chr9 6440979 6441314 -111421313 + AluSx SINE Alu 1 312 0 183 218 109 0 chr9 6441447 6441502 -111421125 - MIR SINE MIR -61 147 87 2264 121 0 3 chr9 6442003 6442316 -111420311 + AluSx SINE Alu 1 312 0 1584 94 49 8 chr9 6442550 6442795 -111419832 + L1MA5A LINE L1 6040 6294 -3 2359 94 0 3 chr9 6442806 6443113 -111419514 + AluSc SINE Alu 1 306 -3 2378 100 0 0 chr9 6444725 6445034 -111417593 + AluSq SINE Alu 1 309 -4 2107 96 55 17 chr9 6445043 6445335 -111417292 + AluSg SINE Alu 1 303 -7 22 0 0 0 chr9 6446129 6446151 -111416476 + AT_rich Low_complexity Low_complexity 1 22 0 2064 187 85 13 chr9 6446228 6446699 -111415928 + MLT1D LTR MaLR 1 505 0 2071 139 0 0 chr9 6446860 6447154 -111415473 + AluSx SINE Alu 1 294 -18 184 290 48 0 chr9 6447640 6447702 -111414925 + MIR SINE MIR 193 257 -5 2236 104 0 3 chr9 6448062 6448351 -111414276 - AluSx SINE Alu -21 291 4 368 242 53 11 chr9 6449347 6449442 -111413185 + FRAM SINE Alu 1 99 -67 2359 97 0 7 chr9 6449457 6449757 -111412870 + AluSx SINE Alu 1 298 -14 201 263 91 40 chr9 6450395 6450494 -111412133 - L2 LINE L2 0 3272 3169 22 35 0 0 chr9 6454035 6454064 -111408563 + AT_rich Low_complexity Low_complexity 1 29 0 1823 165 17 3 chr9 6454975 6455272 -111407355 - AluJb SINE Alu -11 301 1 415 290 91 23 chr9 6457240 6457416 -111405211 + L2 LINE L2 2895 3082 -231 607 188 20 0 chr9 6457441 6457542 -111405085 - FLAM_A SINE Alu -28 114 12 274 265 125 0 chr9 6457543 6457673 -111404954 + L2 LINE L2 3113 3266 -47 184 42 0 0 chr9 6457953 6457977 -111404650 + (TTTG)n Simple_repeat Simple_repeat 2 144 0 1881 140 3 7 chr9 6457977 6458262 -111404365 - AluSx SINE Alu -28 284 1 23 33 0 0 chr9 6458273 6458303 -111404324 + AT_rich Low_complexity Low_complexity 1 30 0 2485 71 0 0 chr9 6458982 6459291 -111403336 - AluY SINE Alu -2 309 1 696 186 76 0 chr9 6459324 6459496 -111403131 - L1MA4 LINE L1 -6 6294 6110 180 219 0 0 chr9 6460235 6460276 -111402351 + (TA)n Simple_repeat Simple_repeat 2 42 0 1850 160 7 3 chr9 6460276 6460563 -111402064 - AluSx SINE Alu -24 288 1 252 299 43 43 chr9 6460742 6460859 -111401768 - MIR SINE MIR -116 146 30 281 109 43 0 chr9 6462160 6462206 -111400421 + Alu SINE Alu 245 292 -10 1169 180 48 0 chr9 6462208 6462414 -111400213 + AluJo SINE Alu 87 302 -10 360 288 45 0 chr9 6462414 6462525 -111400102 + L1 LINE L1 3041 3156 -2990 326 254 100 39 chr9 6462651 6462781 -111399846 + HAL1b LINE L1 1203 1340 -8 299 228 0 0 chr9 6463513 6463570 -111399057 + MLT1A2 LTR MaLR 1 57 -317 2365 106 0 3 chr9 6463571 6463883 -111398744 + AluSx SINE Alu 1 311 -1 2166 122 7 0 chr9 6463894 6464197 -111398430 + AluSx SINE Alu 1 305 -7 429 100 50 10 chr9 6464365 6464465 -111398162 + (TA)n Simple_repeat Simple_repeat 2 105 0 352 187 44 0 chr9 6464532 6464623 -111398004 - L1MB4 LINE L1 -5 6175 6081 2241 123 0 0 chr9 6465486 6465787 -111396840 + AluSx SINE Alu 1 301 -11 1354 93 67 44 chr9 6466414 6466516 -111396111 - MER30 DNA MER1_type 0 230 132 2138 127 0 3 chr9 6466516 6466816 -111395811 + AluSx SINE Alu 1 299 -13 1354 93 67 44 chr9 6466816 6466938 -111395689 - MER30 DNA MER1_type -98 132 1 1648 197 14 0 chr9 6467879 6468163 -111394464 - AluJb SINE Alu -16 296 9 2154 79 3 60 chr9 6468388 6468705 -111393922 + AluY SINE Alu 1 299 -12 1974 110 0 55 chr9 6468716 6469070 -111393557 + AluSx SINE Alu 1 312 0 800 137 8 8 chr9 6469184 6469315 -111393312 - FLAM_C SINE Alu -12 131 1 339 280 60 0 chr9 6469447 6469547 -111393080 + MIR SINE MIR 49 154 -108 2060 112 4 0 chr9 6469913 6470209 -111392418 + AluSg SINE Alu 3 299 0 397 258 139 46 chr9 6470855 6471399 -111391228 + L1MEd LINE L1 957 1651 -839 2068 103 0 82 chr9 6471421 6471557 -111391070 + AluSx SINE Alu 1 147 -165 2321 58 10 7 chr9 6471557 6471879 -111390748 + AluY SINE Alu 1 311 0 2068 103 0 82 chr9 6471879 6472073 -111390554 + AluSx SINE Alu 147 304 -8 9415 46 0 1 chr9 6472297 6474265 -111388362 + L1PA5 LINE L1 4197 6153 -1 2041 118 54 0 chr9 6474600 6474896 -111387731 - AluSq SINE Alu -1 312 1 1992 120 0 11 chr9 6475147 6475458 -111387169 + AluSc SINE Alu 1 308 0 2482 224 79 22 chr9 6476151 6477183 -111385444 + L1MDb LINE L1 767 2007 -4399 1898 122 3 24 chr9 6477183 6477479 -111385148 + AluSq SINE Alu 1 290 -23 728 247 103 0 chr9 6477657 6477851 -111384776 - L2 LINE L2 -236 3077 2864 2277 121 0 6 chr9 6478015 6478329 -111384298 - AluSx SINE Alu 0 312 1 1040 118 0 0 chr9 6478330 6478466 -111384161 - AluSq/x SINE Alu -176 136 1 729 265 161 12 chr9 6478848 6479365 -111383262 + L1MDb LINE L1 3432 4025 -2381 301 327 99 6 chr9 6479373 6479685 -111382942 + L1MDb LINE L1 4266 4606 -1800 732 256 105 49 chr9 6479781 6480733 -111381894 + L1MDb LINE L1 5019 6028 -402 22 0 0 0 chr9 6480792 6480814 -111381813 + AT_rich Low_complexity Low_complexity 1 22 0 1854 155 3 3 chr9 6480816 6481113 -111381514 + AluSx SINE Alu 3 299 -13 2107 118 7 3 chr9 6481289 6481585 -111381042 - AluSp SINE Alu -16 297 1 2215 115 0 0 chr9 6481660 6481948 -111380679 - AluSg SINE Alu -22 288 1 21 0 0 0 chr9 6482243 6482264 -111380363 + AT_rich Low_complexity Low_complexity 1 21 0 850 236 6 0 chr9 6482266 6482448 -111380179 - MER58A DNA MER1_type 0 224 42 22 35 0 0 chr9 6482571 6482600 -111380027 + AT_rich Low_complexity Low_complexity 1 29 0 304 218 149 0 chr9 6482641 6482728 -111379899 + L1ME LINE L1 5637 5736 -385 1916 133 4 0 chr9 6482913 6483184 -111379443 + AluSx SINE Alu 1 272 -40 285 149 14 27 chr9 6483184 6483258 -111379369 + GA-rich Low_complexity Low_complexity 1 73 0 1577 209 3 0 chr9 6484596 6484893 -111377734 - AluJo SINE Alu -14 298 1 2283 110 0 0 chr9 6484898 6485198 -111377429 - AluSx SINE Alu -12 300 1 5076 55 12 5 chr9 6485356 6486009 -111376618 - L1PA7 LINE L1 -1 6153 5496 15241 98 23 32 chr9 6486009 6488583 -111374044 + L1MA4A LINE L1 3071 5588 -715 1756 187 7 0 chr9 6488583 6488882 -111373745 - AluJb SINE Alu -11 301 1 15241 98 23 32 chr9 6488882 6489233 -111373394 + L1MA4A LINE L1 5588 5941 -362 3433 53 0 2 chr9 6488981 6489454 -111373173 + L1PA5 LINE L1 5690 6161 0 * 914 189 86 6 chr9 6489566 6489741 -111372886 + MER5A DNA MER1_type 1 189 0 425 300 79 11 chr9 6490385 6490575 -111372052 + MIR SINE MIR 60 262 0 1812 123 0 11 chr9 6490665 6490925 -111371702 - AluY SINE Alu -15 296 40 212 298 114 23 chr9 6491731 6491862 -111370765 + L2 LINE L2 2259 2401 -913 890 281 91 12 chr9 6492122 6492539 -111370088 + L1MC5 LINE L1 5476 5925 -1883 254 243 0 27 chr9 6492540 6492614 -111370013 + (TA)n Simple_repeat Simple_repeat 1 72 0 822 74 0 50 chr9 6492675 6492781 -111369846 + AluSc SINE Alu 174 284 -25 237 33 0 0 chr9 6492781 6492811 -111369816 + (CAA)n Simple_repeat Simple_repeat 1 30 0 2227 53 36 13 chr9 6492814 6493118 -111369509 + AluY SINE Alu 1 311 0 416 201 179 80 chr9 6493579 6493974 -111368653 + L1MC5 LINE L1 6563 6920 -888 478 253 113 27 chr9 6494154 6494446 -111368181 + L1MC5 LINE L1 7353 7669 -292 2206 175 68 68 chr9 6494466 6495026 -111367601 - MER68 LTR ERV1 0 562 3 234 321 28 9 chr9 6495091 6495200 -111367427 - LTR16B LTR ERVL -62 402 292 273 323 8 24 chr9 6495298 6495422 -111367205 - LTR16B LTR ERVL -309 155 34 371 235 17 9 chr9 6495499 6495614 -111367013 + L1MC5 LINE L1 7744 7859 -102 349 229 141 65 chr9 6495737 6495907 -111366720 - HAL1 LINE L1 -20 2487 2305 325 259 265 24 chr9 6495985 6496151 -111366476 - MIR SINE MIR -40 222 17 531 228 159 38 chr9 6496199 6496594 -111366033 - HAL1 LINE L1 -337 2170 1728 485 289 73 50 chr9 6496636 6496979 -111365648 - HAL1 LINE L1 -2156 351 1 2376 79 0 3 chr9 6497396 6497688 -111364939 + AluY SINE Alu 1 291 -20 1879 151 24 10 chr9 6497718 6498016 -111364611 - AluSx SINE Alu -8 304 3 1561 167 0 25 chr9 6498046 6498142 -111364485 + AluJb SINE Alu 43 140 -172 1942 124 39 0 chr9 6498142 6498425 -111364202 + AluSx SINE Alu 1 294 -18 1561 167 0 25 chr9 6498425 6498603 -111364024 + AluJb SINE Alu 140 310 -2 1817 169 0 20 chr9 6498721 6499022 -111363605 + AluJo SINE Alu 1 295 -17 1921 137 11 0 chr9 6499024 6499301 -111363326 + AluSx SINE Alu 1 280 -32 878 145 0 36 chr9 6499438 6499576 -111363051 - FLAM_C SINE Alu 0 133 1 2092 125 3 3 chr9 6499683 6499979 -111362648 + AluSq SINE Alu 1 296 -17 210 235 20 92 chr9 6499979 6500077 -111362550 + MER5A DNA MER1_type 67 157 -32 460 269 173 15 chr9 6501112 6501309 -111361318 + MIR SINE MIR 3 230 -32 1616 167 7 48 chr9 6501795 6502133 -111360494 + AluJo SINE Alu 2 327 0 1869 137 7 0 chr9 6502321 6502592 -111360035 + AluSx SINE Alu 1 273 -39 599 180 33 161 chr9 6503046 6503183 -111359444 - MER5A DNA MER1_type -5 184 82 1767 154 17 33 chr9 6503183 6503482 -111359145 - AluJb SINE Alu -12 300 7 599 180 33 161 chr9 6503482 6503555 -111359072 - MER5A DNA MER1_type -107 82 1 279 146 42 0 chr9 6503563 6503611 -111359016 + MER5B DNA MER1_type 1 50 -128 321 282 58 83 chr9 6503653 6503809 -111358818 + MER5B DNA MER1_type 26 177 -1 21 0 0 0 chr9 6504037 6504058 -111358569 + AT_rich Low_complexity Low_complexity 1 21 0 1430 142 134 0 chr9 6505145 6505398 -111357229 + AluSx SINE Alu 14 300 -12 492 328 218 29 chr9 6506217 6506673 -111355954 - L3 LINE CR1 -35 1542 971 1921 158 20 0 chr9 6506673 6506977 -111355650 + AluSx SINE Alu 1 310 -2 492 328 218 29 chr9 6506977 6507047 -111355580 - L3 LINE CR1 -606 971 916 2104 143 0 0 chr9 6507052 6507360 -111355267 + AluSx SINE Alu 1 308 -4 1944 130 0 7 chr9 6508676 6508960 -111353667 + AluSx SINE Alu 1 303 0 190 0 0 0 chr9 6508960 6508981 -111353646 + (TAAA)n Simple_repeat Simple_repeat 1 52 0 544 164 239 13 chr9 6508992 6509151 -111353476 + L1MB7 LINE L1 5990 6184 0 1402 204 25 32 chr9 6509161 6509291 -111353336 + AluJb SINE Alu 3 132 -180 1986 105 54 14 chr9 6509291 6509585 -111353042 + AluSx SINE Alu 1 306 -6 1402 204 25 32 chr9 6509585 6509734 -111352893 + AluJb SINE Alu 132 280 -32 2099 118 7 7 chr9 6509846 6510135 -111352492 + AluSx SINE Alu 1 289 -23 2113 109 31 7 chr9 6511451 6511745 -111350882 + AluSx SINE Alu 1 301 -11 320 331 142 7 chr9 6511980 6512128 -111350499 - MIR SINE MIR -89 173 6 1281 199 102 0 chr9 6512993 6513259 -111349368 - AluJo SINE Alu -19 293 1 1830 213 107 22 chr9 6513658 6514146 -111348481 - MER74B LTR ERVL -16 606 78 1941 145 17 0 chr9 6514275 6514565 -111348062 + AluSq SINE Alu 1 295 -18 261 308 64 0 chr9 6514729 6514807 -111347820 + MIR SINE MIR 31 113 -149 1043 95 0 20 chr9 6514956 6515104 -111347523 + AluSq/x SINE Alu 3 147 -165 360 191 0 0 chr9 6515104 6515172 -111347455 + Alu SINE Alu 234 301 0 182 369 98 16 chr9 6515268 6515390 -111347237 - MIR SINE MIR -112 150 19 2048 134 3 7 chr9 6515404 6515703 -111346924 - AluSx SINE Alu -14 298 1 1911 160 20 0 chr9 6515737 6516043 -111346584 + AluJo SINE Alu 1 312 0 249 278 35 43 chr9 6516198 6516313 -111346314 + L1ME3A LINE L1 5962 6075 -95 2022 134 7 0 chr9 6516888 6517180 -111345447 - AluSx SINE Alu -18 294 1 2176 118 10 0 chr9 6517537 6517842 -111344785 + AluSq SINE Alu 1 308 -5 209 370 69 40 chr9 6518132 6518305 -111344322 - MIR SINE MIR -84 178 1 2571 153 244 139 chr9 6518648 6518798 -111343829 + L1MC3 LINE L1 6565 6698 -1087 2009 115 13 35 chr9 6518798 6519112 -111343515 - AluSx SINE Alu -5 307 1 2571 153 244 139 chr9 6519112 6519395 -111343232 + L1MC3 LINE L1 6698 6950 -835 271 214 39 78 chr9 6519395 6519498 -111343129 + MLT1F1 LTR MaLR 27 125 -442 2571 153 244 139 chr9 6519498 6520065 -111342562 + L1MC3 LINE L1 6950 7783 -2 349 285 46 8 chr9 6520423 6520553 -111342074 - L1 LINE L1 -1952 4194 4060 2246 108 0 3 chr9 6520616 6520921 -111341706 - AluSg SINE Alu -6 304 1 987 148 12 0 chr9 6521807 6521969 -111340658 + AluJb SINE Alu 131 294 -18 474 271 86 24 chr9 6521969 6522224 -111340403 + L1ME3A LINE L1 4492 4762 -1384 1233 117 6 0 chr9 6522227 6522398 -111340229 + AluSg SINE Alu 23 194 -116 453 260 136 16 chr9 6522451 6522664 -111339963 + L1ME3A LINE L1 5612 5800 -321 2131 119 0 16 chr9 6522868 6523178 -111339449 + AluSx SINE Alu 1 305 -7 2300 63 7 17 chr9 6523863 6524162 -111338465 - AluY SINE Alu -15 296 1 2069 112 17 3 chr9 6524230 6524524 -111338103 + AluSg SINE Alu 1 298 -12 1489 161 38 65 chr9 6524536 6524851 -111337776 + AluJb SINE Alu 1 307 0 357 179 64 13 chr9 6525281 6525359 -111337268 + MLT1B LTR MaLR 38 119 -271 1690 168 144 47 chr9 6525386 6525808 -111336819 + MLT1C LTR MaLR 1 463 -4 23 0 0 0 chr9 6526302 6526325 -111336302 + AT_rich Low_complexity Low_complexity 1 23 0 185 123 53 18 chr9 6527510 6527567 -111335060 + (TA)n Simple_repeat Simple_repeat 1 59 0 2417 28 52 0 chr9 6527758 6528049 -111334578 + AluY SINE Alu 1 306 -5 1998 103 19 23 chr9 6528217 6528527 -111334100 + AluSc SINE Alu 1 309 0 460 149 243 68 chr9 6528548 6528696 -111333931 - MER5A DNA MER1_type -6 183 10 325 290 54 0 chr9 6528940 6529033 -111333594 + MER91B DNA MER1_type 92 189 -1 30 0 0 0 chr9 6531142 6531172 -111331455 + GC_rich Low_complexity Low_complexity 1 30 0 1326 47 0 10 chr9 6532378 6532397 -111330230 - AluY SINE Alu -7 304 286 279 0 0 0 chr9 6532397 6532428 -111330199 + (TATG)n Simple_repeat Simple_repeat 2 32 0 1326 47 0 10 chr9 6532428 6532666 -111329961 - AluY SINE Alu -25 286 2 2336 92 0 7 chr9 6532905 6533209 -111329418 + AluSx SINE Alu 1 302 -10 545 105 13 0 chr9 6533381 6533457 -111329170 + MADE1 DNA Mariner 1 77 -3 253 275 174 9 chr9 6533816 6533925 -111328702 + MIR SINE MIR 17 143 -119 201 341 49 71 chr9 6534275 6534686 -111327941 - L2 LINE L2 -656 2658 2257 1871 175 3 0 chr9 6535172 6535480 -111327147 - AluSx SINE Alu -3 309 1 275 259 206 46 chr9 6536435 6536566 -111326061 - MIR3 SINE MIR -36 172 21 1363 175 163 44 chr9 6536858 6536878 -111325749 + LTR54B LTR ERV1 1 17 -481 2006 133 0 36 chr9 6536878 6537186 -111325441 + AluSx SINE Alu 1 297 -15 1363 175 163 44 chr9 6537186 6537396 -111325231 + LTR54B LTR ERV1 17 201 -297 2255 119 0 0 chr9 6537396 6537691 -111324936 + AluSx SINE Alu 1 295 -17 1363 175 163 44 chr9 6537691 6537894 -111324733 + LTR54B LTR ERV1 201 487 -11 420 221 11 72 chr9 6537988 6538129 -111324498 - MLT1G1 LTR MaLR -37 556 425 290 138 35 11 chr9 6538166 6538253 -111324374 + CT-rich Low_complexity Low_complexity 2 90 0 1133 226 8 77 chr9 6538280 6538459 -111324168 - MLT1G1 LTR MaLR -294 296 192 2355 75 9 40 chr9 6538459 6538781 -111323846 - AluSx SINE Alu 0 312 1 1133 226 8 77 chr9 6538781 6538961 -111323666 - MLT1G1 LTR MaLR -398 192 1 1709 197 0 7 chr9 6539029 6539323 -111323304 + AluJo SINE Alu 1 292 -20 793 273 24 14 chr9 6539669 6539878 -111322749 - MER58A DNA MER1_type -10 214 4 1578 158 18 32 chr9 6539982 6540260 -111322367 - AluJo SINE Alu -38 274 1 298 238 72 0 chr9 6540263 6540382 -111322245 - L1ME LINE L1 -397 5765 5631 574 248 46 100 chr9 6540501 6540634 -111321993 - Tigger8 DNA MER2_type -180 486 347 1718 183 3 3 chr9 6540634 6540924 -111321703 - AluJb SINE Alu -17 295 6 574 248 46 100 chr9 6540924 6541141 -111321486 - Tigger8 DNA MER2_type -319 347 155 2127 138 0 0 chr9 6541248 6541560 -111321067 - AluSx SINE Alu 0 312 1 1269 204 12 12 chr9 6541686 6541936 -111320691 - MLT1H LTR MaLR -278 271 22 1226 124 0 0 chr9 6541937 6542106 -111320521 - AluSg/x SINE Alu -14 298 130 2366 83 0 13 chr9 6542109 6542409 -111320218 - AluY SINE Alu -15 296 1 450 139 0 28 chr9 6542636 6542708 -111319919 - Tigger2 DNA MER2_type -2648 70 1 941 207 57 10 chr9 6542954 6543147 -111319480 - MER8 DNA MER2_type -37 202 1 2504 230 109 45 chr9 6543204 6543996 -111318631 + L1ME3 LINE L1 5305 6146 -16 1953 120 11 0 chr9 6544213 6544522 -111318105 + AluSx SINE Alu 1 312 0 206 163 41 0 chr9 6544639 6544688 -111317939 + (CATG)n Simple_repeat Simple_repeat 4 54 0 204 275 33 33 chr9 6544688 6544779 -111317848 + (TATG)n Simple_repeat Simple_repeat 4 94 0 746 196 15 23 chr9 6545236 6545369 -111317258 - FLAM_A SINE Alu 0 133 2 1855 149 7 13 chr9 6546289 6546590 -111316037 - AluJo SINE Alu -7 305 7 561 144 25 8 chr9 6546938 6547056 -111315571 + CT-rich Low_complexity Low_complexity 1 120 0 2134 135 0 0 chr9 6547070 6547366 -111315261 - AluSx SINE Alu -16 296 1 341 176 29 29 chr9 6547441 6547509 -111315118 - MLT1B LTR MaLR 0 390 323 1805 132 50 46 chr9 6547669 6548022 -111314605 - MLT1B LTR MaLR -36 392 3 1278 186 7 52 chr9 6548606 6548875 -111313752 + AluJb SINE Alu 38 294 -18 334 271 140 28 chr9 6549588 6549806 -111312821 - L1MC/D LINE L1 -301 5820 5631 2142 136 0 0 chr9 6549811 6550112 -111312515 - AluSx SINE Alu -11 301 1 189 0 0 0 chr9 6550239 6550260 -111312367 + (TATAA)n Simple_repeat Simple_repeat 4 24 0 31 76 0 0 chr9 6550260 6550326 -111312301 + AT_rich Low_complexity Low_complexity 1 66 0 1276 194 68 4 chr9 6550326 6550439 -111312188 + AluJb SINE Alu 10 114 -198 276 30 0 0 chr9 6550439 6550472 -111312155 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 1276 194 68 4 chr9 6550472 6550610 -111312017 + AluJb SINE Alu 114 277 -35 306 73 0 0 chr9 6550638 6550679 -111311948 + (CA)n Simple_repeat Simple_repeat 2 42 0 15881 157 16 24 chr9 6550716 6550882 -111311745 - L1MA3 LINE L1 -2 7722 7556 1903 169 0 6 chr9 6550882 6551196 -111311431 - AluSx SINE Alu 0 312 1 15881 157 16 24 chr9 6551196 6553579 -111309048 - L1MA3 LINE L1 -168 7556 5154 1371 203 43 14 chr9 6553579 6553860 -111308767 - AluJo SINE Alu -23 289 1 15881 157 16 24 chr9 6553860 6553960 -111308667 - L1MA3 LINE L1 -2570 5154 5055 21572 30 3 2 chr9 6553960 6557171 -111305456 + L1PA3 LINE L1 2938 6155 0 15881 157 16 24 chr9 6557171 6558347 -111304280 - L1MA3 LINE L1 -2669 5055 3871 2305 85 3 3 chr9 6558347 6558640 -111303987 - AluSp SINE Alu -20 293 1 15881 157 16 24 chr9 6558640 6558986 -111303641 - L1MA3 LINE L1 -3853 3871 3524 1703 180 0 66 chr9 6558986 6559320 -111303307 - AluJb SINE Alu 0 312 1 263 274 27 0 chr9 6559268 6559341 -111303286 - AluSp SINE Alu -116 187 113 * 15881 157 16 24 chr9 6559320 6559562 -111303065 - L1MA3 LINE L1 -4200 3524 3353 1941 135 74 19 chr9 6559562 6559887 -111302740 + MER61A LTR ERV1 1 343 0 2712 176 35 20 chr9 6559888 6560427 -111302200 + MER61A-int LTR ERV1 3 549 -4668 337 134 45 15 chr9 6560489 6560556 -111302071 + MER61A-int LTR ERV1 731 799 -4418 * 8320 88 82 25 chr9 6560530 6560733 -111301894 + MER61A-int LTR ERV1 1320 1510 -3707 1892 117 60 0 chr9 6560733 6561014 -111301613 - AluY SINE Alu -1 310 13 8320 88 82 25 chr9 6561014 6562136 -111300491 + MER61A-int LTR ERV1 1510 2721 -2496 44061 50 1 4 chr9 6562154 6568320 -111294307 - L1PA5 LINE L1 -7 6147 2 15736 84 5 0 chr9 6568320 6570376 -111292251 - L1P LINE L1 -4069 2077 11 17498 79 49 22 chr9 6570385 6570586 -111292041 + MER61A-int LTR ERV1 2709 2903 -2314 1966 135 7 3 chr9 6570586 6570882 -111291745 - AluSx SINE Alu -15 297 1 17498 79 49 22 chr9 6570882 6573124 -111289503 + MER61A-int LTR ERV1 2903 5217 0 384 129 16 0 chr9 6573124 6573186 -111289441 + MER61A LTR ERV1 1 63 -280 4723 135 3 7 chr9 6573186 6573877 -111288750 - THE1-int LTR MaLR -264 1316 629 1830 166 7 7 chr9 6573894 6574196 -111288431 + AluJb SINE Alu 1 302 -10 15042 141 12 6 chr9 6574196 6576436 -111286191 - L1M1 LINE L1 -5301 2264 12 337 268 0 0 chr9 6576973 6577044 -111285583 - L1ME LINE L1 -539 5582 5512 311 243 112 57 chr9 6577053 6577190 -111285437 - MER5A DNA MER1_type -3 186 29 360 94 0 0 chr9 6577675 6577728 -111284899 + (TCCC)n Simple_repeat Simple_repeat 1 53 0 803 215 0 0 chr9 6577728 6577872 -111284755 - AluSg/x SINE Alu -2 308 165 1781 186 3 0 chr9 6577877 6578173 -111284454 - AluJb SINE Alu -15 297 1 231 167 0 0 chr9 6578986 6579028 -111283599 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 294 154 282 0 chr9 6579174 6579252 -111283375 + MER67A LTR ERV1 1 100 -443 2112 183 39 39 chr9 6579320 6579784 -111282843 + MER67A LTR ERV1 80 543 0 2083 129 17 0 chr9 6580226 6580520 -111282107 - AluSx SINE Alu -13 299 1 2166 139 0 0 chr9 6580522 6580825 -111281802 - AluSx SINE Alu -9 303 1 1634 188 50 10 chr9 6580825 6581003 -111281624 - AluJo SINE Alu -1 311 115 2227 95 0 7 chr9 6581003 6581297 -111281330 - AluSg SINE Alu -18 292 1 1634 188 50 10 chr9 6581297 6581416 -111281211 - AluJo SINE Alu -197 115 2 1019 340 52 38 chr9 6581878 6582636 -111279991 + ERVL LTR ERVL 420 1187 -3809 1285 309 73 54 chr9 6582788 6583764 -111278863 + ERVL LTR ERVL 1449 2471 -3183 2324 84 3 0 chr9 6583764 6584080 -111278547 - AluSq SINE Alu 0 318 2 1285 309 73 54 chr9 6584080 6584221 -111278406 + ERVL LTR ERVL 2471 2608 -3046 2300 90 0 34 chr9 6584317 6584639 -111277988 + AluSx SINE Alu 1 311 -1 726 312 26 26 chr9 6585751 6586020 -111276607 - MER115 DNA AcHobo -391 302 34 184 342 165 13 chr9 6586025 6586183 -111276444 - L2 LINE L2 -378 2936 2755 252 130 0 0 chr9 6586926 6586972 -111275655 + (T)n Simple_repeat Simple_repeat 1 46 0 744 258 97 5 chr9 6587972 6588189 -111274438 + MIR SINE MIR 8 244 -18 744 157 58 8 chr9 6588267 6588388 -111274239 + FLAM_A SINE Alu 5 131 -2 2394 94 0 0 chr9 6589303 6589602 -111273025 - AluSg SINE Alu -11 299 1 1815 171 7 13 chr9 6590670 6590968 -111271659 - AluJo SINE Alu -14 298 3 2498 50 17 0 chr9 6591138 6591437 -111271190 + AluY SINE Alu 1 304 -7 290 194 16 16 chr9 6591761 6591823 -111270804 - MLT1B LTR MaLR -325 65 4 210 273 0 0 chr9 6591825 6591869 -111270758 - L2 LINE L2 -307 3006 2963 352 257 20 20 chr9 6591970 6592071 -111270556 + MIR SINE MIR 11 111 -151 1119 206 47 117 chr9 6592072 6592542 -111270085 - MER39 LTR ERV1 -2 705 269 932 149 0 37 chr9 6592587 6592748 -111269879 - FRAM SINE Alu -4 172 18 322 253 0 13 chr9 6592762 6592837 -111269790 - MER39 LTR ERV1 -633 74 1 530 292 13 0 chr9 6592837 6592991 -111269636 + MIR SINE MIR 107 262 0 1401 163 45 45 chr9 6593573 6593756 -111268871 - AluJo SINE Alu -17 295 110 1786 109 70 4 chr9 6593756 6594013 -111268614 + AluSx SINE Alu 1 274 -38 1401 163 45 45 chr9 6594013 6594118 -111268509 - AluJo SINE Alu -201 111 7 468 282 10 0 chr9 6594123 6594226 -111268401 + L2 LINE L2 3210 3313 0 6203 233 33 20 chr9 6594748 6596030 -111266597 - L1M4 LINE L1 -2075 4307 2990 2273 104 0 0 chr9 6596030 6596319 -111266308 - AluY SINE Alu -22 289 1 6203 233 33 20 chr9 6596319 6596879 -111265748 - L1M4 LINE L1 -3392 2990 2439 11243 170 93 62 chr9 6596889 6597076 -111265551 - L1MA4 LINE L1 -2 7319 7139 2416 67 3 3 chr9 6597076 6597373 -111265254 + AluY SINE Alu 1 297 -14 11243 170 93 62 chr9 6597373 6598561 -111264066 - L1MA4 LINE L1 -182 7139 5989 1947 158 0 13 chr9 6598561 6598877 -111263750 - AluJb SINE Alu 0 312 1 11243 170 93 62 chr9 6598877 6598988 -111263639 - L1MA4 LINE L1 -1332 5989 5883 1687 186 3 37 chr9 6598988 6599311 -111263316 + AluJo SINE Alu 1 312 0 11243 170 93 62 chr9 6599311 6599468 -111263159 - L1MA4 LINE L1 -1438 5883 5732 860 169 0 0 chr9 6599468 6599598 -111263029 - FLAM_C SINE Alu -11 132 3 11243 170 93 62 chr9 6599598 6601626 -111261001 - L1MA4 LINE L1 -1589 5732 3405 226 204 82 20 chr9 6601623 6601672 -111260955 - L1MA4 LINE L1 -6236 932 881 * 4310 236 54 2 chr9 6601673 6602573 -111260054 - L1MA4 LINE L1 -6216 952 6 40946 71 7 4 chr9 6602577 6608707 -111253920 - L1PA5 LINE L1 -1 6153 3 9064 138 51 88 chr9 6608707 6609008 -111253619 - L1M4 LINE L1 -3931 2453 2142 2376 96 0 13 chr9 6609008 6609322 -111253305 + AluY SINE Alu 1 310 -1 9064 138 51 88 chr9 6609322 6611560 -111251067 - L1M4 LINE L1 -4242 2142 14 1199 181 188 19 chr9 6612019 6612328 -111250299 - MLT1A1 LTR MaLR 0 365 5 319 316 85 69 chr9 6612851 6613308 -111249319 + L2 LINE L2 2616 3090 -182 21 0 0 0 chr9 6613710 6613731 -111248896 + AT_rich Low_complexity Low_complexity 1 21 0 679 198 93 0 chr9 6617609 6617771 -111244856 + L1 LINE L1 4170 4346 -1800 2871 10 0 0 chr9 6617774 6618085 -111244542 + AluYa5 SINE Alu 1 311 0 5195 118 7 23 chr9 6618088 6618951 -111243676 + L1PA16 LINE L1 5317 6165 -1 2044 178 18 13 chr9 6620958 6621341 -111241286 + MSTD LTR MaLR 1 385 -11 1218 152 107 49 chr9 6621815 6622093 -111240534 - AluJb SINE Alu 0 318 27 1865 173 84 13 chr9 6622387 6622780 -111239847 - MSTB LTR MaLR -4 422 2 594 183 40 40 chr9 6622783 6622909 -111239718 + FLAM_C SINE Alu 1 126 -17 207 69 0 0 chr9 6622910 6622939 -111239688 + (TTA)n Simple_repeat Simple_repeat 2 30 0 13924 198 47 18 chr9 6622939 6625926 -111236701 - L1PB1 LINE L1 -8 6859 3961 2277 109 0 0 chr9 6625926 6626229 -111236398 - AluSx SINE Alu -9 303 1 13924 198 47 18 chr9 6626229 6626449 -111236178 - L1PB1 LINE L1 -2906 3961 3749 2172 98 14 0 chr9 6626449 6626736 -111235891 - AluSc SINE Alu -16 293 3 13924 198 47 18 chr9 6626736 6627631 -111234996 - L1PB1 LINE L1 -3118 3749 2882 207 69 0 0 chr9 6627631 6627660 -111234967 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 13924 198 47 18 chr9 6627660 6630141 -111232486 - L1PB1 LINE L1 -3985 2882 1 688 133 38 0 chr9 6630187 6630292 -111232335 + FRAM SINE Alu 47 155 -21 21 36 0 0 chr9 6630292 6630320 -111232307 + AT_rich Low_complexity Low_complexity 1 28 0 255 226 0 0 chr9 6630345 6630407 -111232220 - HsTC2 DNA Tc2 -1836 62 1 532 227 102 6 chr9 6630647 6630823 -111231804 - L1ME3A LINE L1 -219 5951 5759 233 310 128 75 chr9 6631007 6631101 -111231526 + L2 LINE L2 2824 2912 -360 2023 136 16 48 chr9 6631101 6631477 -111231150 + THE1B LTR MaLR 1 364 0 233 310 128 75 chr9 6631477 6631608 -111231019 + L2 LINE L2 2912 3061 -211 283 150 0 0 chr9 6632131 6632191 -111230436 - L1MC3 LINE L1 0 7785 7726 370 184 178 55 chr9 6632337 6632500 -111230127 - L1ME LINE L1 -317 5804 5622 359 265 138 5 chr9 6632506 6632695 -111229932 - L1ME LINE L1 -517 5604 5391 1278 228 71 63 chr9 6632761 6633270 -111229357 - HAL1 LINE L1 -1992 515 3 241 224 15 15 chr9 6634471 6634538 -111228089 - MLT1L LTR MaLR -534 81 15 3326 234 109 26 chr9 6634558 6635727 -111226900 + HAL1 LINE L1 702 1967 -540 1600 109 9 0 chr9 6635991 6636212 -111226415 - AluSq SINE Alu -14 299 77 692 203 24 0 chr9 6636774 6636897 -111225730 + AluJb SINE Alu 141 266 -46 528 220 165 11 chr9 6636999 6637157 -111225470 - MER5A DNA MER1_type 0 189 4 501 290 10 62 chr9 6637535 6637728 -111224899 - MER5A DNA MER1_type -6 183 1 205 271 85 0 chr9 6637953 6638012 -111224615 - MIR3 SINE MIR -3 205 142 420 274 42 38 chr9 6638123 6638290 -111224337 - MIR3 SINE MIR -36 172 4 840 125 8 16 chr9 6638672 6638800 -111223827 + FLAM_C SINE Alu 7 133 -10 2329 110 0 16 chr9 6638806 6639123 -111223504 + AluSx SINE Alu 1 312 0 2126 134 3 0 chr9 6639685 6639983 -111222644 + AluJb SINE Alu 1 299 -13 2087 175 35 22 chr9 6639983 6640389 -111222238 + MLT2D LTR ERVL 4 414 0 265 353 15 45 chr9 6640519 6640652 -111221975 + L2 LINE L2 3144 3272 0 1053 277 95 25 chr9 6640712 6641082 -111221545 + L1ME LINE L1 4579 4922 -1240 2194 109 0 0 chr9 6641082 6641366 -111221261 - AluSx SINE Alu -24 288 5 1053 277 95 25 chr9 6641366 6642094 -111220533 + L1ME LINE L1 4922 5759 -403 41836 44 1 3 chr9 6643063 6649229 -111213398 - L1PA4 LINE L1 -3 6152 1 29 60 0 0 chr9 6649244 6649294 -111213333 + AT_rich Low_complexity Low_complexity 1 50 0 2051 118 0 0 chr9 6649434 6649705 -111212922 + AluSx SINE Alu 24 294 -18 237 259 0 0 chr9 6649857 6649911 -111212716 + MER21B LTR ERV1 40 93 -770 2158 94 0 60 chr9 6649911 6650229 -111212398 + AluSc SINE Alu 1 299 -10 1137 157 20 0 chr9 6650238 6650435 -111212192 + L1PB3 LINE L1 5953 6153 -1 1554 214 38 17 chr9 6650516 6651017 -111211610 + MER21B LTR ERV1 206 756 -107 2133 135 26 0 chr9 6651309 6651613 -111211014 - AluSx SINE Alu 0 312 1 252 0 0 0 chr9 6653374 6653402 -111209225 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 360 327 19 0 chr9 6653837 6653941 -111208686 - L2 LINE L2 -5 3267 3162 378 0 0 0 chr9 6654054 6654096 -111208531 + (TG)n Simple_repeat Simple_repeat 2 43 0 1364 120 16 38 chr9 6654119 6654251 -111208376 - L1MC1 LINE L1 -440 5893 5893 2330 112 0 6 chr9 6654251 6654564 -111208063 - AluSx SINE Alu -1 311 1 1364 120 16 38 chr9 6654564 6654796 -111207831 - L1MC1 LINE L1 -440 5893 5657 790 334 47 31 chr9 6654785 6655190 -111207437 - L1M4 LINE L1 -1109 5037 4640 * 2196 108 0 44 chr9 6655190 6655358 -111207269 - AluSx SINE Alu -11 301 152 2469 82 0 22 chr9 6655358 6655673 -111206954 - AluY SINE Alu -3 308 1 2196 108 0 44 chr9 6655673 6655819 -111206808 - AluSx SINE Alu -160 152 1 790 334 47 31 chr9 6655819 6656417 -111206210 - L1M4 LINE L1 -1506 4640 4018 565 313 51 47 chr9 6656454 6657000 -111205627 - L1M4 LINE L1 -2475 3671 3129 2176 127 7 0 chr9 6657000 6657307 -111205320 - AluSx SINE Alu -3 309 1 565 313 51 47 chr9 6657307 6657428 -111205199 - L1M4 LINE L1 -3017 3129 3010 1715 209 64 43 chr9 6657428 6657896 -111204731 + MER31A LTR ERV1 4 481 -4 565 313 51 47 chr9 6657896 6658491 -111204136 - L1M4 LINE L1 -3136 3010 2402 297 73 0 0 chr9 6658566 6658607 -111204020 - HERVL LTR ERVL -4275 1379 1339 6379 132 14 13 chr9 6658608 6660644 -111201983 + L1MA2 LINE L1 4266 6304 0 2491 60 0 7 chr9 6660964 6661266 -111201361 - AluY SINE Alu -11 300 1 231 36 0 0 chr9 6661273 6661301 -111201326 + (T)n Simple_repeat Simple_repeat 1 28 0 1767 159 43 7 chr9 6661715 6662016 -111200611 - AluJb SINE Alu 0 312 1 234 279 0 15 chr9 6662016 6662084 -111200543 - MER5A DNA MER1_type -113 76 10 397 257 86 29 chr9 6662113 6662253 -111200374 - MIR SINE MIR -75 187 40 1168 152 15 10 chr9 6662285 6662482 -111200145 - L1MC2 LINE L1 -8 6336 6139 249 191 79 11 chr9 6662486 6662559 -111200068 + Tigger3(Golem) DNA MER2_type 240 321 -910 212 57 0 29 chr9 6662559 6662594 -111200033 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 249 191 79 11 chr9 6662594 6662609 -111200018 + Tigger3(Golem) DNA MER2_type 321 334 -897 1081 119 57 23 chr9 6664008 6664185 -111198442 + MER46A DNA MER2_type 54 236 0 30 0 0 0 chr9 6664371 6664401 -111198226 + AT_rich Low_complexity Low_complexity 1 30 0 2007 87 42 19 chr9 6666008 6666318 -111196309 + Tigger3b DNA MER2_type 343 659 -572 1368 158 14 0 chr9 6666331 6666553 -111196074 - Tigger3b DNA MER2_type -1006 225 1 2449 146 55 55 chr9 6666553 6667041 -111195586 - L1MC2 LINE L1 -410 5923 5436 583 172 31 2 chr9 6667316 6667429 -111195198 - L1ME1 LINE L1 -2 6332 6058 225 152 0 0 chr9 6667429 6667462 -111195165 - MER3 DNA MER1_type -160 49 17 372 177 210 18 chr9 6667462 6667584 -111195043 - L1ME1 LINE L1 -149 6017 5877 451 237 17 0 chr9 6668116 6668234 -111194393 - L1ME1 LINE L1 -1084 5062 4943 211 125 0 71 chr9 6668264 6668320 -111194307 + (TCCC)n Simple_repeat Simple_repeat 2 53 0 427 252 17 0 chr9 6668396 6668515 -111194112 - L1MC2 LINE L1 -1083 5063 4943 210 168 0 69 chr9 6668515 6668616 -111194011 + CT-rich Low_complexity Low_complexity 1 94 0 1432 236 64 12 chr9 6668619 6669038 -111193589 - L1MC2 LINE L1 -1199 4947 4507 713 180 47 0 chr9 6669481 6669609 -111193018 - AluJo SINE Alu -176 136 3 3222 141 37 8 chr9 6670203 6670713 -111191914 + LTR45 LTR ERV1 1 525 0 263 322 76 64 chr9 6670970 6671141 -111191486 + LTR16C LTR ERVL 78 250 -241 887 272 35 31 chr9 6671146 6671436 -111191191 + LTR16C LTR ERVL 201 491 0 5079 156 14 34 chr9 6671801 6671892 -111190735 + L1MB3 LINE L1 5173 5264 -919 2231 122 3 0 chr9 6671892 6672196 -111190431 + AluSx SINE Alu 1 305 -7 2107 116 0 7 chr9 6672196 6672489 -111190138 + AluSx SINE Alu 1 292 -20 5079 156 14 34 chr9 6672489 6672506 -111190121 + L1MB3 LINE L1 5263 5279 -904 2558 53 0 0 chr9 6672506 6672805 -111189822 + AluY SINE Alu 1 299 -12 5079 156 14 34 chr9 6672805 6673351 -111189276 + L1MB3 LINE L1 5279 5807 -376 1751 179 0 3 chr9 6673351 6673648 -111188979 + AluJb SINE Alu 1 296 -16 5079 156 14 34 chr9 6673648 6674016 -111188611 + L1MB3 LINE L1 5807 6181 -2 631 145 36 114 chr9 6674936 6675129 -111187498 - MER5B DNA MER1_type 0 178 1 234 208 14 69 chr9 6675608 6675680 -111186947 - MER5A DNA MER1_type -113 76 9 366 85 0 0 chr9 6675791 6675850 -111186777 + (TATG)n Simple_repeat Simple_repeat 2 60 0 421 196 101 101 chr9 6675908 6675972 -111186655 - MER5A DNA MER1_type 0 189 126 2402 93 3 0 chr9 6675972 6676284 -111186343 + AluSp SINE Alu 1 313 0 421 196 101 101 chr9 6676284 6676408 -111186219 - MER5A DNA MER1_type -62 127 1 685 274 41 53 chr9 6676588 6676939 -111185688 + MLT1G1 LTR MaLR 1 389 -206 300 185 111 0 chr9 6676996 6677077 -111185550 + MLT1G1 LTR MaLR 501 590 0 208 269 0 0 chr9 6677277 6677329 -111185298 + (TAA)n Simple_repeat Simple_repeat 3 54 0 530 198 0 0 chr9 6677332 6677428 -111185199 - MIR SINE MIR -29 233 138 544 208 8 54 chr9 6677641 6677771 -111184856 + FLAM_A SINE Alu 1 124 -9 29 0 0 0 chr9 6678128 6678157 -111184470 + AT_rich Low_complexity Low_complexity 1 29 0 267 31 0 0 chr9 6679366 6679398 -111183229 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1732 166 18 3 chr9 6679401 6679685 -111182942 - AluJb SINE Alu -24 288 1 894 75 17 0 chr9 6679810 6679930 -111182697 + AluSp/q SINE Alu 181 302 -11 1464 88 0 10 chr9 6679930 6680122 -111182505 + AluY SINE Alu 1 190 -121 690 0 0 0 chr9 6680122 6680198 -111182429 + AluY SINE Alu 57 132 -179 2072 115 0 3 chr9 6680202 6680498 -111182129 + AluY SINE Alu 1 295 -16 2478 34 7 17 chr9 6680504 6680832 -111181795 + AluY SINE Alu 1 311 0 336 200 24 12 chr9 6681415 6681500 -111181127 - MIR SINE MIR -121 141 56 1694 169 0 44 chr9 6681639 6681958 -111180669 + AluJb SINE Alu 1 305 -7 886 224 0 0 chr9 6682009 6682174 -111180453 + FRAM SINE Alu 1 164 -12 1932 99 4 4 chr9 6682176 6682439 -111180188 + AluSq SINE Alu 1 263 -50 275 193 0 0 chr9 6682541 6682598 -111180029 + AluSq SINE Alu 245 301 -1 195 42 0 0 chr9 6682852 6682876 -111179751 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2099 131 3 3 chr9 6683030 6683327 -111179300 - AluSp SINE Alu -16 297 1 2474 81 0 7 chr9 6683327 6683634 -111178993 - AluSx SINE Alu -7 305 1 474 18 0 0 chr9 6683640 6683695 -111178932 + (TTA)n Simple_repeat Simple_repeat 2 56 0 1987 101 4 0 chr9 6683699 6683956 -111178671 - AluSx SINE Alu -32 280 23 1975 136 3 7 chr9 6683964 6684279 -111178348 - AluSx SINE Alu 0 314 1 2288 84 3 0 chr9 6684811 6685130 -111177497 - AluSx SINE Alu 0 320 1 1424 206 17 24 chr9 6685138 6685434 -111177193 - AluJo SINE Alu -18 294 1 1032 201 14 5 chr9 6685442 6685651 -111176976 - AluJb SINE Alu 0 312 102 555 147 147 0 chr9 6685651 6685753 -111176874 + FLAM_C SINE Alu 1 117 -26 2001 154 0 3 chr9 6685766 6686077 -111176550 - AluJb SINE Alu -2 310 1 606 213 12 50 chr9 6686254 6686405 -111176222 + AluJb SINE Alu 157 303 -9 1800 169 23 10 chr9 6686405 6686713 -111175914 + AluSx SINE Alu 1 312 0 2404 93 0 0 chr9 6686903 6687205 -111175422 + AluSg1 SINE Alu 1 302 -7 495 236 260 24 chr9 6687205 6687413 -111175214 + Zaphod DNA AcHobo 383 639 -3392 2322 99 3 3 chr9 6687413 6687715 -111174912 + AluSx SINE Alu 1 302 -10 1378 53 0 6 chr9 6687770 6687939 -111174688 + AluY SINE Alu 136 303 -8 254 182 18 0 chr9 6687971 6688026 -111174601 + Zaphod DNA AcHobo 673 728 -3303 2108 119 10 0 chr9 6688026 6688321 -111174306 + AluSx SINE Alu 1 298 -14 2179 179 87 50 chr9 6688330 6688789 -111173838 + MER21A LTR ERV1 386 861 -70 1045 186 6 0 chr9 6688789 6688972 -111173655 - AluSg/x SINE Alu -8 302 119 567 168 71 9 chr9 6689248 6689361 -111173266 + FLAM_C SINE Alu 12 131 -12 23 0 0 0 chr9 6689390 6689413 -111173214 + AT_rich Low_complexity Low_complexity 1 23 0 2214 109 0 7 chr9 6689417 6689711 -111172916 - AluSc SINE Alu -17 292 1 2381 74 0 0 chr9 6689716 6690024 -111172603 - AluY SINE Alu 0 308 1 893 186 47 131 chr9 6690030 6690390 -111172237 + MER34C LTR ERV1 256 585 0 2077 128 3 7 chr9 6690509 6690806 -111171821 - AluSx SINE Alu -16 296 1 2540 70 3 0 chr9 6691896 6692198 -111170429 - AluSx SINE Alu -9 303 1 207 0 0 0 chr9 6692210 6692233 -111170394 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2158 105 7 0 chr9 6692410 6692696 -111169931 - AluSg SINE Alu -21 289 2 2161 111 0 26 chr9 6692901 6693207 -111169420 - AluSx SINE Alu -14 298 1 23 33 0 0 chr9 6693913 6693943 -111168684 + AT_rich Low_complexity Low_complexity 1 30 0 1327 167 77 42 chr9 6694150 6694437 -111168190 + AluJo SINE Alu 1 297 -15 1941 142 10 10 chr9 6694457 6694753 -111167874 - AluSx SINE Alu -16 296 1 859 229 0 0 chr9 6694763 6694938 -111167689 - FAM SINE Alu 0 175 1 1210 107 6 0 chr9 6697186 6697345 -111165282 - AluSp SINE Alu -51 262 103 2225 102 9 19 chr9 6697596 6697911 -111164716 - AluSx SINE Alu 0 312 1 2365 99 0 0 chr9 6698127 6698421 -111164206 + AluSg SINE Alu 3 296 -14 261 0 0 0 chr9 6699069 6699098 -111163529 + (TA)n Simple_repeat Simple_repeat 2 30 0 2370 178 93 8 chr9 6699118 6699624 -111163003 + MER89 LTR ERV1 1 549 -10 226 280 28 28 chr9 6700264 6700371 -111162256 - L1ME4a LINE L1 -48 6073 5967 805 274 51 8 chr9 6700903 6701137 -111161490 + MIR SINE MIR 8 251 -11 2311 105 0 3 chr9 6701661 6701966 -111160661 + AluSx SINE Alu 5 308 -4 1783 179 3 3 chr9 6702296 6702608 -111160019 - AluJo SINE Alu 0 312 1 2257 105 13 0 chr9 6703164 6703470 -111159157 + AluSx SINE Alu 1 310 -2 195 42 0 0 chr9 6703474 6703498 -111159129 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 461 154 0 0 chr9 6705142 6705207 -111157420 - HERVL18 LTR ERVL -3265 2782 2718 * 1197 155 64 2 chr9 6705204 6705464 -111157163 - HERVL18 LTR ERVL -3595 2452 2119 2697 196 14 26 chr9 6705489 6706368 -111156259 - HERVL18 LTR ERVL -4425 1622 56 385 256 2 2 chr9 6706469 6706559 -111156068 - AluJ/FLAM SINE Alu -227 75 1 2435 86 3 0 chr9 6706676 6706977 -111155650 + AluSp SINE Alu 1 302 -11 1192 38 0 0 chr9 6706977 6707109 -111155518 + AluY SINE Alu 1 132 -179 2357 71 0 7 chr9 6707113 6707410 -111155217 + AluY SINE Alu 1 295 -16 2230 42 46 18 chr9 6707410 6707727 -111154900 + AluY SINE Alu 1 311 0 336 200 24 12 chr9 6708310 6708395 -111154232 - MIR SINE MIR -121 141 56 1744 163 0 44 chr9 6708534 6708853 -111153774 + AluJb SINE Alu 1 305 -7 904 218 0 0 chr9 6708904 6709069 -111153558 + FRAM SINE Alu 1 164 -12 370 64 0 0 chr9 6709071 6709118 -111153509 + Alu SINE Alu 1 47 -255 23 0 0 0 chr9 6709236 6709259 -111153368 + AT_rich Low_complexity Low_complexity 1 23 0 815 173 0 0 chr9 6710170 6710303 -111152324 + AluJo/FLAM SINE Alu 1 133 -169 1441 127 5 9 chr9 6710306 6710519 -111152108 + AluSp SINE Alu 1 212 -101 452 240 202 8 chr9 6710535 6710664 -111151963 - AluJo SINE Alu -38 274 121 553 44 15 0 chr9 6710664 6710732 -111151895 - L1PA8 LINE L1 -319 5853 5785 2108 166 44 70 chr9 6710733 6711051 -111151576 - Tigger7 DNA MER2_type -308 425 119 2381 89 10 0 chr9 6711051 6711355 -111151272 + AluSp SINE Alu 1 307 -6 2108 166 44 70 chr9 6711355 6711464 -111151163 - Tigger7 DNA MER2_type -614 119 9 394 310 84 0 chr9 6711488 6711643 -111150984 - L1MCb LINE L1 -5308 737 570 486 286 34 7 chr9 6711735 6711882 -111150745 - L1MCb LINE L1 -5471 574 424 279 176 0 44 chr9 6711884 6711952 -111150675 - L1MCb LINE L1 -5772 273 209 2068 127 0 0 chr9 6711991 6712274 -111150353 - AluSx SINE Alu -16 296 14 405 182 0 0 chr9 6712279 6712356 -111150271 - AluJ/FRAM SINE Alu -7 305 229 671 61 0 0 chr9 6712456 6712538 -111150089 - AluY SINE Alu -228 83 2 * 741 164 16 0 chr9 6712538 6712657 -111149970 + AluSg/x SINE Alu 181 301 -9 1558 162 4 0 chr9 6712672 6712937 -111149690 + AluJb SINE Alu 16 281 -31 916 136 8 0 chr9 6712937 6712976 -111149651 + AluJo SINE Alu 16 320 0 963 280 15 19 chr9 6712981 6713249 -111149378 + LTR16B LTR ERVL 109 375 -89 400 243 0 0 chr9 6713909 6713983 -111148644 + FRAM SINE Alu 77 150 -26 1297 226 7 13 chr9 6714001 6714311 -111148316 + AluJb SINE Alu 3 310 -2 1339 151 29 59 chr9 6714334 6714431 -111148196 + L1MC1 LINE L1 6059 6157 -176 2056 115 7 3 chr9 6714431 6714726 -111147901 + AluSx SINE Alu 1 296 -16 1339 151 29 59 chr9 6714726 6714900 -111147727 + L1MC1 LINE L1 6157 6322 -11 1779 150 10 10 chr9 6714901 6715201 -111147426 + AluJo SINE Alu 1 300 -12 1986 110 0 0 chr9 6715212 6715485 -111147142 + AluSx SINE Alu 3 275 -37 1883 97 6 61 chr9 6715515 6715826 -111146801 + AluSq SINE Alu 3 296 -17 1792 144 6 52 chr9 6715848 6716174 -111146453 - AluSx SINE Alu -1 311 1 716 124 66 25 chr9 6716262 6716383 -111146244 - FLAM_C SINE Alu -4 139 14 1836 153 3 16 chr9 6716862 6717175 -111145452 + AluSx SINE Alu 1 309 -3 1100 207 195 0 chr9 6717505 6717766 -111144861 + MER21B LTR ERV1 1 312 -551 1055 82 0 0 chr9 6717767 6717902 -111144725 + AluSq/x SINE Alu 1 135 -177 2296 74 0 0 chr9 6717902 6718199 -111144428 + AluY SINE Alu 1 297 -14 2403 168 85 78 chr9 6718208 6718667 -111143960 + MER21A LTR ERV1 386 851 -80 1830 148 3 23 chr9 6718667 6718977 -111143650 - AluSx SINE Alu -8 304 1 2403 168 85 78 chr9 6718977 6719059 -111143568 + MER21A LTR ERV1 851 931 0 2020 68 79 7 chr9 6719221 6719501 -111143126 - AluSp SINE Alu -13 300 1 2149 109 0 0 chr9 6719600 6719894 -111142733 - AluSg SINE Alu -15 295 2 194 125 0 25 chr9 6719945 6719985 -111142642 + (GAAAA)n Simple_repeat Simple_repeat 4 42 0 1922 117 11 3 chr9 6720060 6720369 -111142258 + AluSx SINE Alu 1 311 0 370 174 315 0 chr9 6720435 6720527 -111142100 + FLAM_A SINE Alu 1 121 -12 37 0 0 0 chr9 6720748 6720785 -111141842 + AT_rich Low_complexity Low_complexity 1 37 0 803 206 11 29 chr9 6720785 6720924 -111141703 + AluJo SINE Alu 1 138 -174 2335 78 0 0 chr9 6720924 6721219 -111141408 + AluSx SINE Alu 1 295 -17 803 206 11 29 chr9 6721219 6721254 -111141373 + AluJo SINE Alu 138 172 -140 267 115 39 167 chr9 6721256 6721319 -111141308 + FAM SINE Alu 116 185 -126 2038 125 0 0 chr9 6721319 6721616 -111141011 + AluSx SINE Alu 2 298 -14 809 135 0 8 chr9 6721617 6721750 -111140877 + FLAM_C SINE Alu 1 132 -1 267 115 39 167 chr9 6721750 6721762 -111140865 + FAM SINE Alu 161 173 -2 965 291 139 58 chr9 6721978 6722317 -111140310 + ERVL LTR ERVL 884 1194 -4460 1792 135 36 30 chr9 6722317 6722621 -111140006 + AluJb SINE Alu 3 308 -4 965 291 139 58 chr9 6722621 6723195 -111139432 + ERVL LTR ERVL 1194 1827 -3827 619 133 0 0 chr9 6723316 6723414 -111139213 + AluSg/x SINE Alu 209 306 -3 312 172 35 0 chr9 6723415 6723473 -111139154 + AluY SINE Alu 129 188 -113 753 149 8 22 chr9 6723523 6723657 -111138970 - FLAM_C SINE Alu 0 133 2 2100 110 0 0 chr9 6723672 6723962 -111138665 - AluSq SINE Alu -22 291 2 2355 61 3 0 chr9 6724020 6724313 -111138314 - AluY SINE Alu -17 294 1 957 191 60 101 chr9 6724315 6724681 -111137946 + MER34C LTR ERV1 235 585 0 1998 118 3 7 chr9 6724800 6725096 -111137531 - AluSx SINE Alu -17 295 1 2250 86 3 0 chr9 6726185 6726486 -111136141 - AluSx SINE Alu -10 302 1 207 0 0 0 chr9 6726498 6726521 -111136106 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2037 105 7 0 chr9 6726698 6726984 -111135643 - AluSg SINE Alu -21 289 2 2056 108 0 23 chr9 6727189 6727494 -111135133 - AluSx SINE Alu -14 298 1 263 254 228 9 chr9 6728164 6728278 -111134349 + MIR SINE MIR 82 220 -42 387 60 0 0 chr9 6728323 6728373 -111134254 + (TCC)n Simple_repeat Simple_repeat 2 51 0 1767 139 21 0 chr9 6728413 6728701 -111133926 + AluJb SINE Alu 8 301 -11 878 164 18 12 chr9 6728854 6729025 -111133602 + AluJo SINE Alu 126 297 -15 208 222 42 69 chr9 6729101 6729173 -111133454 + MIR SINE MIR 193 262 0 2143 48 44 0 chr9 6730135 6730432 -111132195 - AluY SINE Alu 0 309 1 823 195 84 97 chr9 6731662 6731970 -111130657 + MER2 DNA MER2_type 42 345 0 305 340 113 5 chr9 6732012 6732215 -111130412 - MIR SINE MIR -18 244 20 314 89 0 0 chr9 6732428 6732473 -111130154 - MADE1 DNA Mariner -4 76 32 2071 89 14 0 chr9 6732473 6732764 -111129863 + AluSx SINE Alu 1 295 -17 1208 128 0 0 chr9 6732766 6732946 -111129681 + AluSq SINE Alu 134 313 0 951 199 0 0 chr9 6733072 6733238 -111129389 - AluJb SINE Alu -13 299 134 1883 106 65 0 chr9 6733238 6733513 -111129114 - AluSx SINE Alu -19 293 1 235 284 43 9 chr9 6733519 6733635 -111128992 - L1ME LINE L1 -338 5783 5664 621 118 0 0 chr9 6733779 6733864 -111128763 + AluY SINE Alu 207 291 -20 1410 165 120 39 chr9 6734033 6734206 -111128421 - MSTD LTR MaLR -2 394 236 2008 121 7 3 chr9 6734206 6734503 -111128124 - AluSx SINE Alu -14 298 1 1410 165 120 39 chr9 6734503 6734638 -111127989 - MSTD LTR MaLR -160 236 61 418 269 45 87 chr9 6734753 6735002 -111127625 + MIR SINE MIR 23 260 -2 2099 96 0 53 chr9 6735548 6735870 -111126757 - AluSg SINE Alu -5 305 1 1626 176 0 20 chr9 6735873 6736174 -111126453 - AluJo SINE Alu -17 295 1 192 395 45 13 chr9 6736174 6736331 -111126296 + L2 LINE L2 2517 2678 -636 2162 111 3 0 chr9 6736363 6736670 -111125957 + AluSp SINE Alu 1 308 -5 2194 100 0 10 chr9 6737159 6737459 -111125168 - AluSg SINE Alu -13 297 1 2182 112 0 6 chr9 6737545 6737858 -111124769 - AluSx SINE Alu -1 311 1 373 327 79 16 chr9 6737858 6738148 -111124479 + L2 LINE L2 2772 3081 -191 629 212 80 7 chr9 6738221 6738372 -111124255 + AluJb SINE Alu 134 295 -17 1474 115 0 0 chr9 6738913 6739122 -111123505 + AluSg/x SINE Alu 92 300 -10 1906 155 0 0 chr9 6739274 6739583 -111123044 + AluSx SINE Alu 1 309 -3 416 291 147 103 chr9 6739588 6739995 -111122632 + L1MEd LINE L1 66 513 -5606 1992 103 26 0 chr9 6739995 6740318 -111122309 + AluSg SINE Alu 1 330 0 416 291 147 103 chr9 6740318 6740541 -111122086 + L1MEd LINE L1 513 725 -5394 1136 189 12 87 chr9 6740550 6740698 -111121929 + AluJb SINE Alu 5 116 -196 2125 94 3 26 chr9 6740698 6741006 -111121621 + AluSq SINE Alu 1 301 -12 1136 189 12 87 chr9 6741006 6741190 -111121437 + AluJb SINE Alu 116 312 0 376 192 50 20 chr9 6741261 6741360 -111121267 + L1MC5 LINE L1 7336 7437 -524 604 274 63 83 chr9 6741381 6741613 -111121014 - L1 LINE L1 -2084 4062 3827 1516 79 26 40 chr9 6741613 6741840 -111120787 + AluSx SINE Alu 1 224 -88 604 274 63 83 chr9 6741840 6742269 -111120358 - L1 LINE L1 -2319 3827 3442 1837 129 33 0 chr9 6743334 6743636 -111118991 - AluJb SINE Alu 0 312 1 648 105 0 11 chr9 6743761 6743856 -111118771 + FLAM_C SINE Alu 34 127 -16 2099 110 7 0 chr9 6743864 6744174 -111118453 + AluSp SINE Alu 1 312 -1 2489 47 0 0 chr9 6744403 6744701 -111117926 - AluY SINE Alu -13 298 1 202 303 210 12 chr9 6744761 6744923 -111117704 + MIR SINE MIR 48 241 -21 1504 204 92 36 chr9 6745007 6745426 -111117201 + MER39 LTR ERV1 269 565 0 2255 100 0 0 chr9 6745490 6745799 -111116828 - AluSx SINE Alu -3 309 1 2141 103 3 10 chr9 6745831 6746142 -111116485 + AluSx SINE Alu 3 311 -1 195 42 0 0 chr9 6746387 6746411 -111116216 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1992 128 3 3 chr9 6746565 6746862 -111115765 - AluSp SINE Alu -16 297 1 2121 114 0 10 chr9 6746862 6747170 -111115457 - AluSx SINE Alu -7 305 1 1959 97 0 0 chr9 6747176 6747490 -111115137 - AluSc SINE Alu 0 336 23 1669 176 0 0 chr9 6747498 6747811 -111114816 - AluJb SINE Alu 0 313 1 2161 84 3 0 chr9 6748343 6748662 -111113965 - AluSx SINE Alu 0 320 1 1319 209 17 24 chr9 6748670 6748966 -111113661 - AluJo SINE Alu -18 294 1 966 201 14 5 chr9 6748974 6749183 -111113444 - AluJb SINE Alu 0 312 102 565 147 147 0 chr9 6749183 6749285 -111113342 + FLAM_C SINE Alu 1 117 -26 1882 154 0 3 chr9 6749298 6749609 -111113018 - AluJb SINE Alu -2 310 1 2188 92 3 7 chr9 6749676 6749981 -111112646 + AluSx SINE Alu 1 304 -8 1542 170 44 27 chr9 6750271 6750634 -111111993 - L1MA7 LINE L1 -100 6200 5825 974 166 0 12 chr9 6750641 6750804 -111111823 - AluJb SINE Alu -18 294 134 2146 105 0 0 chr9 6750804 6751098 -111111529 - AluSc SINE Alu -15 294 1 2060 124 0 3 chr9 6751103 6751401 -111111226 - AluSx SINE Alu -15 297 1 294 202 11 79 chr9 6751649 6751738 -111110889 - MER34B LTR ERV1 -448 117 35 259 161 18 18 chr9 6751901 6751957 -111110670 - AluSp SINE Alu -133 170 115 21 0 0 0 chr9 6752125 6752146 -111110481 + AT_rich Low_complexity Low_complexity 1 21 0 1890 155 0 0 chr9 6752146 6752442 -111110185 + AluSx SINE Alu 1 296 -16 1510 157 20 38 chr9 6752455 6752620 -111110007 - AluJo SINE Alu -14 298 139 2211 113 3 0 chr9 6752620 6752931 -111109696 - AluSx SINE Alu 0 312 1 1510 157 20 38 chr9 6752931 6753058 -111109569 - AluJo SINE Alu -173 139 11 754 133 18 0 chr9 6753185 6753298 -111109329 + AluSq/x SINE Alu 2 116 -196 1479 96 58 139 chr9 6753302 6753323 -111109304 - MER4C-int LTR ERV1 -4278 1268 1247 2199 114 0 0 chr9 6753323 6753630 -111108997 + AluSq SINE Alu 1 307 -6 1479 96 58 139 chr9 6753630 6753868 -111108759 - MER4C-int LTR ERV1 -4299 1247 991 2042 111 14 0 chr9 6753868 6754165 -111108462 - AluSg SINE Alu -9 301 1 1479 96 58 139 chr9 6754165 6754224 -111108403 - MER4C-int LTR ERV1 -4555 991 511 235 178 0 44 chr9 6754244 6754289 -111108338 - LTR49 LTR ERV1 -282 313 271 309 143 0 0 chr9 6754356 6754405 -111108222 - MER4C-int LTR ERV1 -5799 799 751 713 229 227 24 chr9 6754416 6754863 -111107764 - MER4C-int LTR ERV1 -6009 589 1 489 144 264 8 chr9 6754884 6755009 -111107618 - MER4C LTR ERV1 -18 447 291 358 195 98 89 chr9 6755064 6755187 -111107440 - MER4A LTR ERV1 -322 342 219 1800 86 89 51 chr9 6755187 6755479 -111107148 + AluSq SINE Alu 1 303 -10 412 16 16 0 chr9 6755501 6755562 -111107065 - AluY SINE Alu -1 309 248 2562 39 0 0 chr9 6755662 6755967 -111106660 - AluY SINE Alu -6 305 1 983 149 11 17 chr9 6755988 6756163 -111106464 - MER4A LTR ERV1 -490 174 1 706 168 61 26 chr9 6756204 6756420 -111106207 + MLT1A1 LTR MaLR 207 365 0 1641 138 145 59 chr9 6757093 6757305 -111105322 - LTR54B LTR ERV1 -4 494 302 1953 107 10 24 chr9 6757305 6757603 -111105024 - AluSx SINE Alu -18 294 1 1641 138 145 59 chr9 6757603 6757711 -111104916 - LTR54B LTR ERV1 -196 302 205 2210 108 7 0 chr9 6757711 6758018 -111104609 - AluSc SINE Alu 0 309 1 1641 138 145 59 chr9 6758018 6758151 -111104476 - LTR54B LTR ERV1 -293 205 1 1125 268 135 39 chr9 6758154 6758359 -111104268 + Zaphod DNA AcHobo 186 370 -3661 2265 92 0 3 chr9 6758359 6758663 -111103964 + AluSg SINE Alu 1 303 -7 1125 268 135 39 chr9 6758663 6758871 -111103756 + Zaphod DNA AcHobo 370 639 -3392 2191 99 3 3 chr9 6758871 6759173 -111103454 + AluSx SINE Alu 1 302 -10 1321 53 0 6 chr9 6759228 6759399 -111103228 + AluY SINE Alu 136 305 -6 389 176 73 94 chr9 6759420 6759485 -111103142 + Zaphod DNA AcHobo 663 728 -3303 2068 108 10 0 chr9 6759485 6759780 -111102847 + AluSx SINE Alu 1 298 -14 389 176 73 94 chr9 6759780 6759866 -111102761 + Zaphod DNA AcHobo 728 810 -3221 881 159 38 6 chr9 6759866 6760023 -111102604 - FRAM SINE Alu -4 162 1 389 176 73 94 chr9 6760023 6760103 -111102524 + Zaphod DNA AcHobo 810 890 -3141 2152 96 3 3 chr9 6760106 6760399 -111102228 + AluSq SINE Alu 1 293 -20 21 57 0 0 chr9 6760408 6760443 -111102184 + AT_rich Low_complexity Low_complexity 1 35 0 241 180 0 20 chr9 6760447 6760497 -111102130 - LTR59 LTR ERV1 -78 519 471 321 155 12 36 chr9 6760568 6760652 -111101975 + Zaphod DNA AcHobo 909 990 -3041 1065 111 0 0 chr9 6760666 6760819 -111101808 - AluSp/q SINE Alu 0 313 161 2192 102 16 0 chr9 6760866 6761169 -111101458 + AluSx SINE Alu 1 308 -4 1678 152 47 7 chr9 6761216 6761513 -111101114 + AluJb SINE Alu 1 309 -3 208 200 213 12 chr9 6761558 6761638 -111100989 + MIR SINE MIR 122 217 -45 778 263 50 93 chr9 6761672 6761922 -111100705 - L2 LINE L2 -43 3270 3048 2066 100 0 62 chr9 6761922 6762243 -111100384 - AluSx SINE Alu -11 301 1 778 263 50 93 chr9 6762243 6762456 -111100171 - L2 LINE L2 -265 3048 2827 423 233 100 0 chr9 6762456 6762576 -111100051 + LTR33 LTR ERVL 2 133 -388 649 241 120 49 chr9 6762668 6762934 -111099693 + LTR33 LTR ERVL 235 519 -2 2323 252 90 26 chr9 6762939 6763433 -111099194 - L2 LINE L2 -498 2816 2254 2494 61 0 0 chr9 6763433 6763744 -111098883 + AluY SINE Alu 1 311 0 2323 252 90 26 chr9 6763744 6764012 -111098615 - L2 LINE L2 -1060 2254 2005 736 147 133 21 chr9 6764026 6764169 -111098458 + AluSg/x SINE Alu 141 299 -13 2257 47 40 7 chr9 6764169 6764470 -111098157 + AluY SINE Alu 1 311 0 1182 96 0 0 chr9 6765388 6765554 -111097073 + AluSg/x SINE Alu 132 297 -15 2180 86 7 13 chr9 6766631 6766934 -111095693 + AluSg SINE Alu 2 302 -8 1988 139 0 0 chr9 6767125 6767427 -111095200 + AluSx SINE Alu 7 308 -4 1606 112 37 121 chr9 6767577 6767954 -111094673 - MER4A LTR ERV1 0 664 261 539 160 0 20 chr9 6767954 6768054 -111094573 - MER4A LTR ERV1 -566 98 1 268 253 190 0 chr9 6768054 6768132 -111094495 + MLT1G1 LTR MaLR 297 389 -206 2177 164 9 83 chr9 6768416 6768494 -111094133 + MER70A LTR ERVL 1 83 -389 1876 146 14 0 chr9 6768494 6768781 -111093846 - AluSx SINE Alu -21 291 1 2177 164 9 83 chr9 6768781 6768804 -111093823 + MER70A LTR ERVL 83 106 -366 2126 91 3 23 chr9 6768804 6769111 -111093516 + AluSp SINE Alu 1 301 -12 2177 164 9 83 chr9 6769111 6769429 -111093198 + MER70A LTR ERVL 106 390 -82 364 188 58 0 chr9 6769530 6769599 -111093028 + MER70A LTR ERVL 400 472 0 1889 101 69 3 chr9 6769635 6769923 -111092704 + AluSx SINE Alu 1 307 -5 1098 235 0 0 chr9 6770048 6770244 -111092383 + LTR28 LTR ERV1 1 196 -824 29 0 0 0 chr9 6770244 6770273 -111092354 + AT_rich Low_complexity Low_complexity 1 29 0 315 252 126 8 chr9 6770273 6770392 -111092235 - L1MCa LINE L1 -4361 2065 1933 430 240 116 8 chr9 6770415 6770544 -111092083 + LTR28 LTR ERV1 202 344 -676 607 275 18 30 chr9 6770549 6770716 -111091911 + MER61D LTR ERV1 337 501 0 1237 225 3 40 chr9 6770770 6770904 -111091723 + AluJo SINE Alu 4 141 -171 2175 120 0 0 chr9 6770904 6771213 -111091414 + AluSx SINE Alu 1 309 -3 1237 225 3 40 chr9 6771213 6771376 -111091251 + AluJo SINE Alu 141 290 -22 1990 118 3 13 chr9 6771430 6771734 -111090893 - AluSc SINE Alu 0 309 9 2138 118 0 0 chr9 6771751 6772056 -111090571 - AluSx SINE Alu -7 305 1 2129 106 0 13 chr9 6772061 6772363 -111090264 - AluSx SINE Alu -14 298 1 561 126 23 0 chr9 6772412 6772499 -111090128 + AluSg SINE Alu 12 100 -210 2327 78 0 10 chr9 6772806 6773114 -111089513 - AluSq SINE Alu -8 305 1 238 122 73 0 chr9 6773624 6773665 -111088962 + MER57A LTR ERV1 295 338 -65 1492 206 3 10 chr9 6773686 6773992 -111088635 + AluJb SINE Alu 5 308 -4 2106 97 10 0 chr9 6774057 6774357 -111088270 - AluY SINE Alu -8 303 1 22 35 0 0 chr9 6774415 6774444 -111088183 + AT_rich Low_complexity Low_complexity 1 29 0 712 168 0 8 chr9 6774444 6774563 -111088064 - FLAM_C SINE Alu -15 118 1 4003 173 43 8 chr9 6774621 6775373 -111087254 - L1MB7 LINE L1 -16 6168 5391 741 176 0 0 chr9 6775413 6775544 -111087083 - FLAM_C SINE Alu -3 140 10 706 203 27 20 chr9 6776183 6776331 -111086296 - FRAM SINE Alu -30 146 1 306 296 51 0 chr9 6777145 6777243 -111085384 - L1M4 LINE L1 -2971 3175 3073 531 66 0 0 chr9 6777243 6777319 -111085308 + (CTTG)n Simple_repeat Simple_repeat 2 77 0 1819 148 4 0 chr9 6777320 6777598 -111085029 - AluSx SINE Alu -33 279 1 446 266 80 88 chr9 6777644 6777870 -111084757 + L1MC/D LINE L1 5255 5478 -2330 645 209 16 0 chr9 6777888 6778017 -111084610 + FLAM_A SINE Alu 1 131 -2 2195 113 0 0 chr9 6778019 6778320 -111084307 + AluSx SINE Alu 1 301 -11 1514 188 7 36 chr9 6778410 6778714 -111083913 + AluJo SINE Alu 1 295 -17 27 0 0 0 chr9 6778716 6778743 -111083884 + AT_rich Low_complexity Low_complexity 1 27 0 2074 116 3 22 chr9 6780121 6780440 -111082187 + AluSp SINE Alu 1 313 0 1552 180 10 35 chr9 6780774 6781085 -111081542 + AluJo SINE Alu 1 303 -9 1691 169 23 10 chr9 6781085 6781392 -111081235 + AluSx SINE Alu 1 312 0 2129 117 0 0 chr9 6781582 6781881 -111080746 + AluSg SINE Alu 1 299 -11 1514 182 0 21 chr9 6782329 6782620 -111080007 - AluJb SINE Alu -27 285 1 216 97 0 0 chr9 6782709 6782740 -111079887 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 1989 80 88 0 chr9 6783067 6783341 -111079286 - AluSx SINE Alu -13 299 2 235 244 178 39 chr9 6783537 6783635 -111078992 - MER2 DNA MER2_type -16 329 246 2174 118 0 0 chr9 6783635 6783941 -111078686 + AluSx SINE Alu 1 306 -6 235 244 178 39 chr9 6783941 6784022 -111078605 - MER2 DNA MER2_type -99 246 125 324 172 30 49 chr9 6784024 6784261 -111078366 + AluJb SINE Alu 2 301 0 2101 120 3 0 chr9 6784408 6784717 -111077910 - AluSg SINE Alu 0 310 1 201 74 0 0 chr9 6784718 6784745 -111077882 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 298 170 0 0 chr9 6785602 6785649 -111076978 - L2 LINE L2 0 3313 3267 2246 77 0 10 chr9 6786715 6787028 -111075599 + AluY SINE Alu 1 310 -1 1958 87 37 24 chr9 6787480 6787778 -111074849 + AluSq SINE Alu 1 302 -11 1923 114 4 0 chr9 6787990 6788310 -111074317 + AluSx SINE Alu 1 321 0 907 158 0 74 chr9 6788314 6788516 -111074111 - AluJb SINE Alu -2 310 124 1710 168 21 0 chr9 6788530 6788816 -111073811 + AluJb SINE Alu 1 292 -20 2274 72 0 28 chr9 6788821 6789141 -111073486 + AluY SINE Alu 1 311 0 2177 59 0 21 chr9 6789148 6789487 -111073140 + AluY SINE Alu 1 333 0 331 224 0 0 chr9 6789900 6789967 -111072660 + L1ME LINE L1 5619 5685 -436 2190 99 0 13 chr9 6790239 6790553 -111072074 + AluSg SINE Alu 1 310 0 2109 92 0 0 chr9 6790823 6791104 -111071523 + AluSx SINE Alu 1 281 -31 1611 171 3 13 chr9 6792272 6792571 -111070056 + AluSx SINE Alu 10 305 -7 2276 85 0 0 chr9 6792899 6793193 -111069434 - AluSg SINE Alu -16 294 1 372 22 0 0 chr9 6793524 6793569 -111069058 + (CA)n Simple_repeat Simple_repeat 1 45 0 195 42 0 0 chr9 6793617 6793641 -111068986 + (CCCCCT)n Simple_repeat Simple_repeat 2 25 0 10861 28 20 31 chr9 6793646 6795009 -111067618 + SVA Other Other 38 1385 -1 1856 199 97 21 chr9 6795571 6796002 -111066625 + MLT1C LTR MaLR 1 464 -3 2129 99 0 3 chr9 6796086 6796379 -111066248 + AluSx SINE Alu 5 296 -16 2428 60 0 3 chr9 6798390 6798691 -111063936 + AluY SINE Alu 1 300 -11 747 114 21 6 chr9 6799884 6800129 -111062498 + AluJ SINE Alu 1 294 -18 1927 75 20 0 chr9 6800598 6800852 -111061775 - AluSq SINE Alu -16 297 39 25 0 0 0 chr9 6801178 6801203 -111061424 + AT_rich Low_complexity Low_complexity 1 25 0 207 0 0 0 chr9 6801304 6801327 -111061300 + (TA)n Simple_repeat Simple_repeat 2 24 0 908 132 0 22 chr9 6801329 6801465 -111061162 - FLAM_C SINE Alu 0 133 1 969 91 0 0 chr9 6801535 6801667 -111060960 + AluY SINE Alu 173 304 -7 1442 156 31 28 chr9 6803160 6803449 -111059178 + AluJo SINE Alu 1 290 -22 187 355 106 23 chr9 6804667 6804932 -111057695 + L2 LINE L2 2140 2426 -888 271 261 0 0 chr9 6804950 6805015 -111057612 + LTR16B LTR ERVL 54 118 -346 435 193 45 0 chr9 6805017 6805105 -111057522 + AluS SINE Alu 2 93 -219 631 167 135 26 chr9 6805109 6805265 -111057362 + L1ME3A LINE L1 5693 5865 -305 2113 104 0 3 chr9 6805711 6806009 -111056618 - AluSx SINE Alu -15 297 1 525 220 135 21 chr9 6806009 6806150 -111056477 - FRAM SINE Alu -13 163 7 1973 259 96 31 chr9 6806166 6806434 -111056193 + L2 LINE L2 2005 2254 -1060 2045 129 0 0 chr9 6806434 6806745 -111055882 - AluY SINE Alu 0 311 1 1973 259 96 31 chr9 6806745 6807239 -111055388 + L2 LINE L2 2254 2816 -498 597 244 65 57 chr9 6807244 6807474 -111055153 - LTR33 LTR ERVL -2 519 288 1350 197 4 4 chr9 6807693 6807972 -111054655 - AluJo SINE Alu -33 279 1 2097 101 13 7 chr9 6808530 6808836 -111053791 + AluSx SINE Alu 5 312 0 1693 95 91 18 chr9 6810024 6810298 -111052329 - AluSc SINE Alu -14 295 2 1205 135 5 25 chr9 6811011 6811211 -111051416 + AluSx SINE Alu 1 196 -116 1465 199 13 10 chr9 6811424 6811763 -111050864 + AluSx SINE Alu 1 340 0 22 35 0 0 chr9 6813119 6813148 -111049479 + GC_rich Low_complexity Low_complexity 1 29 0 389 92 70 21 chr9 6813473 6813615 -111049012 + (TATAA)n Simple_repeat Simple_repeat 1 149 0 1689 146 4 7 chr9 6814143 6814423 -111048204 + AluJb SINE Alu 5 283 -29 43 0 0 0 chr9 6814455 6814498 -111048129 + AT_rich Low_complexity Low_complexity 1 43 0 * 300 224 83 68 chr9 6814482 6814674 -111047953 + L1MC5 LINE L1 7571 7765 -196 1861 106 71 3 chr9 6815180 6815463 -111047164 + AluSx SINE Alu 1 302 -10 2201 95 3 7 chr9 6815801 6816105 -111046522 + AluSc SINE Alu 1 303 -6 2091 137 0 3 chr9 6816540 6816853 -111045774 - AluSx SINE Alu 0 312 1 304 280 72 32 chr9 6816929 6816973 -111045654 - MIR SINE MIR -62 146 105 1236 172 4 70 chr9 6816973 6817229 -111045398 + MER8 DNA MER2_type 1 239 0 2266 94 0 3 chr9 6817230 6817539 -111045088 + AluSq SINE Alu 1 308 -5 304 280 72 32 chr9 6817539 6817617 -111045010 - MIR SINE MIR -102 106 17 647 131 46 39 chr9 6817655 6817785 -111044842 + FLAM_A SINE Alu 1 131 -2 222 209 47 0 chr9 6817797 6817840 -111044787 + MIR SINE MIR 67 111 -151 411 303 73 12 chr9 6817843 6818008 -111044619 + MIR SINE MIR 85 259 -3 2004 96 0 36 chr9 6818479 6818782 -111043845 + AluSx SINE Alu 1 292 -20 2013 113 17 3 chr9 6818804 6819104 -111043523 + AluSx SINE Alu 1 304 -8 2199 88 3 7 chr9 6820483 6820789 -111041838 + AluSp SINE Alu 1 305 -8 216 200 0 0 chr9 6820806 6820851 -111041776 + GA-rich Low_complexity Low_complexity 4 48 0 696 144 0 24 chr9 6820857 6820982 -111041645 + FLAM_C SINE Alu 5 126 -7 3819 150 49 71 chr9 6821023 6821725 -111040902 + LTR39 LTR ERV1 1 717 -66 1730 153 14 0 chr9 6821725 6822012 -111040615 + AluJb SINE Alu 1 291 -21 3819 150 49 71 chr9 6822012 6822032 -111040595 + LTR39 LTR ERV1 717 736 -47 2028 127 0 0 chr9 6822032 6822331 -111040296 + AluSx SINE Alu 4 302 -10 3819 150 49 71 chr9 6822331 6822408 -111040219 + LTR39 LTR ERV1 736 783 0 2298 85 7 0 chr9 6822965 6823272 -111039355 - AluSq SINE Alu -4 309 1 2290 76 3 7 chr9 6823448 6823751 -111038876 - AluSx SINE Alu -10 302 1 1937 114 3 50 chr9 6823771 6824088 -111038539 - AluSp SINE Alu -11 302 1 1349 181 12 116 chr9 6824470 6824668 -111037959 - AluJo SINE Alu 0 302 85 1928 141 0 26 chr9 6824668 6824980 -111037647 - AluSx SINE Alu -8 304 1 2228 83 0 3 chr9 6824983 6825284 -111037343 - AluSg SINE Alu -10 300 1 1349 181 12 116 chr9 6825284 6825418 -111037209 - AluJo SINE Alu -219 83 1 1513 169 0 77 chr9 6825792 6825914 -111036713 + AluJb SINE Alu 1 131 -181 2281 85 3 0 chr9 6825914 6826209 -111036418 - AluSp SINE Alu -17 296 1 1513 169 0 77 chr9 6826209 6826424 -111036203 + AluJb SINE Alu 131 312 0 1913 100 0 4 chr9 6826522 6826792 -111035835 + AluSq SINE Alu 35 303 -10 372 331 47 0 chr9 6826804 6826931 -111035696 + HERVL68 LTR ERVL 1084 1216 -4314 390 56 14 111 chr9 6826975 6827047 -111035580 + Alu SINE Alu 236 300 0 485 226 49 0 chr9 6827113 6827215 -111035412 + HERVL68 LTR ERVL 3510 3616 -1914 269 119 24 0 chr9 6827209 6827251 -111035376 + HERVL68 LTR ERVL 3765 3807 -1723 * 586 341 70 24 chr9 6827526 6827895 -111034732 + HERVL68 LTR ERVL 2490 2875 -2655 2091 92 0 3 chr9 6827911 6828225 -111034402 - AluSc SINE Alu 0 313 1 1409 177 106 40 chr9 6828231 6828553 -111034074 - MLT1D LTR MaLR 0 505 163 1360 115 0 14 chr9 6828876 6829084 -111033543 - AluSq SINE Alu -5 308 104 1334 127 0 14 chr9 6829094 6829306 -111033321 - AluSg/x SINE Alu 0 312 104 2043 123 16 7 chr9 6829311 6829620 -111033007 - AluSx SINE Alu 0 312 1 292 163 0 0 chr9 6829635 6829678 -111032949 - MER57A LTR ERV1 -66 337 295 1989 125 3 0 chr9 6830143 6830431 -111032196 - AluSx SINE Alu -23 289 1 2126 121 0 0 chr9 6830565 6830872 -111031755 + AluSq SINE Alu 1 307 -6 1002 54 15 0 chr9 6830872 6831002 -111031625 + AluY SINE Alu 1 132 -179 225 0 0 0 chr9 6831463 6831488 -111031139 + (A)n Simple_repeat Simple_repeat 1 25 0 678 200 13 13 chr9 6831488 6831638 -111030989 + HERVL68 LTR ERVL 770 919 -2118 1963 134 13 0 chr9 6831650 6831949 -111030678 + AluSg SINE Alu 1 303 -7 2174 101 0 3 chr9 6831961 6832268 -111030359 + AluSg SINE Alu 1 306 -4 2330 87 0 3 chr9 6832320 6832630 -111029997 + AluSg1 SINE Alu 1 309 0 1594 159 17 23 chr9 6832655 6832957 -111029670 + AluJb SINE Alu 1 300 -12 1950 173 36 48 chr9 6832957 6833224 -111029403 + HERVL68 LTR ERVL 929 1191 -1846 2028 133 0 0 chr9 6833224 6833526 -111029101 + AluSx SINE Alu 1 302 -10 1950 173 36 48 chr9 6833526 6833679 -111028948 + HERVL68 LTR ERVL 1191 1344 -1693 2478 121 24 66 chr9 6833679 6833730 -111028897 - MER57B LTR ERV1 0 434 382 2378 64 0 0 chr9 6833730 6834025 -111028602 + AluY SINE Alu 1 295 -16 2478 121 24 66 chr9 6834025 6834426 -111028201 - MER57B LTR ERV1 -52 382 1 1585 81 124 4 chr9 6834430 6834664 -111027963 - MER57B-int LTR ERV1 -4 7533 7272 612 118 30 104 chr9 6834664 6834710 -111027917 - LTR54B LTR ERV1 -371 127 79 2383 63 9 25 chr9 6834710 6835028 -111027599 - AluSp SINE Alu 0 313 1 612 118 30 104 chr9 6835028 6835116 -111027511 - LTR54B LTR ERV1 -419 79 3 2832 89 0 0 chr9 6835116 6835477 -111027150 - MER57B-int LTR ERV1 -389 7148 6788 2374 74 7 0 chr9 6835482 6835791 -111026836 + AluY SINE Alu 1 311 0 586 94 0 62 chr9 6835805 6835901 -111026726 + AluS SINE Alu 2 91 -222 321 93 0 0 chr9 6835901 6835944 -111026683 - Alu SINE Alu -265 43 1 939 111 24 83 chr9 6835944 6836127 -111026500 - MER57-int LTR ERV1 -4402 1451 1259 2134 120 0 0 chr9 6836127 6836428 -111026199 + AluSx SINE Alu 1 301 -11 939 111 24 83 chr9 6836428 6836548 -111026079 - MER57-int LTR ERV1 -4594 1259 632 2726 181 48 25 chr9 6836572 6836998 -111025629 + HERVL68 LTR ERVL 1377 1821 -1216 4256 77 9 0 chr9 6836998 6837547 -111025080 - MER41A LTR ERV1 0 554 1 2726 181 48 25 chr9 6837547 6837684 -111024943 + HERVL68 LTR ERVL 1821 1953 -1084 2300 85 3 0 chr9 6837685 6837990 -111024637 - AluSp SINE Alu -7 306 1 737 239 117 9 chr9 6838565 6838787 -111023840 + REP3 LTR ERV 290 535 -27 2173 132 30 28 chr9 6838792 6839155 -111023472 + THE1B LTR MaLR 1 364 0 6538 96 3 0 chr9 6839156 6840020 -111022607 + THE1B-int LTR MaLR 2 868 -712 633 228 7 0 chr9 6840024 6840160 -111022467 + L1P LINE L1 4187 4323 -1823 1790 141 3 3 chr9 6840167 6840471 -111022156 + AluSx SINE Alu 3 306 -6 273 162 4 70 chr9 6840482 6840547 -111022080 + AluJo SINE Alu 83 134 -168 1448 88 39 61 chr9 6840566 6840775 -111021852 + L1P4 LINE L1 5128 5331 -834 2168 117 0 10 chr9 6840775 6841083 -111021544 + AluSq SINE Alu 1 305 -8 1448 88 39 61 chr9 6841083 6841251 -111021376 + L1P4 LINE L1 5331 5501 -664 1836 125 18 4 chr9 6841251 6841532 -111021095 + AluSq SINE Alu 1 285 -28 432 0 0 0 chr9 6841532 6841580 -111021047 + (CTAAA)n Simple_repeat Simple_repeat 3 50 0 1851 106 8 0 chr9 6841591 6841855 -111020772 + AluSx SINE Alu 1 266 -46 1289 128 0 137 chr9 6841858 6842015 -111020612 - AluJb SINE Alu -40 272 178 1306 120 147 71 chr9 6842015 6842281 -111020346 - AluSx SINE Alu -26 286 1 1289 128 0 137 chr9 6842281 6842436 -111020191 - AluJb SINE Alu -134 178 3 1928 133 0 0 chr9 6842483 6842769 -111019858 - AluSx SINE Alu -26 286 1 659 156 57 8 chr9 6843122 6843244 -111019383 + FLAM_C SINE Alu 12 139 -4 2127 116 0 6 chr9 6843275 6843586 -111019041 - AluSc SINE Alu 0 309 1 2266 70 0 0 chr9 6843591 6843899 -111018728 - AluY SINE Alu 0 308 1 2064 126 0 0 chr9 6843914 6844215 -111018412 - AluSx SINE Alu -11 301 1 1644 132 12 0 chr9 6844228 6844470 -111018157 - AluSg SINE Alu -16 294 50 699 221 49 71 chr9 6844470 6844512 -111018115 - L1MDa LINE L1 -4380 2160 2119 2021 118 3 3 chr9 6844512 6844816 -111017811 + AluSc SINE Alu 1 304 -5 699 221 49 71 chr9 6844816 6845081 -111017546 - L1MDa LINE L1 -4421 2119 1860 728 154 0 70 chr9 6845121 6845264 -111017363 - FLAM_C SINE Alu 0 133 1 1607 109 0 0 chr9 6845359 6845588 -111017039 - AluSg/x SINE Alu -2 308 80 725 95 0 0 chr9 6845588 6845683 -111016944 - AluSg SINE Alu -188 122 28 232 259 120 0 chr9 6845698 6845806 -111016821 - L1MDa LINE L1 -4782 1758 1638 245 195 0 0 chr9 6845817 6845858 -111016769 - MER57A LTR ERV1 -67 336 296 503 214 44 87 chr9 6845858 6846064 -111016563 - L1MDa LINE L1 -4873 1667 1471 328 177 0 0 chr9 6846078 6846140 -111016487 - AluS SINE Alu -8 293 232 827 129 0 0 chr9 6846299 6846423 -111016204 + AluSg/x SINE Alu 173 296 -14 187 398 21 0 chr9 6846696 6846789 -111015838 + L2 LINE L2 3178 3272 0 1867 147 7 3 chr9 6846896 6847203 -111015424 - AluSx SINE Alu -4 308 1 858 168 0 0 chr9 6847313 6847444 -111015183 - FLAM_C SINE Alu -2 131 1 2210 103 0 3 chr9 6847641 6847941 -111014686 + AluSc SINE Alu 2 300 -9 681 197 15 29 chr9 6847953 6848090 -111014537 - AluJo SINE Alu -176 136 2 216 111 0 0 chr9 6848361 6848397 -111014230 + (TCC)n Simple_repeat Simple_repeat 3 38 0 1484 171 75 0 chr9 6848713 6848994 -111013633 + AluJo SINE Alu 1 302 0 188 135 27 0 chr9 6848999 6849036 -111013591 + (TTATA)n Simple_repeat Simple_repeat 1 38 0 1950 113 13 17 chr9 6849036 6849199 -111013428 - AluSx SINE Alu -13 299 136 2145 106 13 0 chr9 6849199 6849501 -111013126 - AluSp SINE Alu -6 307 2 1950 113 13 17 chr9 6849501 6849637 -111012990 - AluSx SINE Alu -176 136 1 2476 39 3 7 chr9 6849659 6849965 -111012662 - AluY SINE Alu -6 305 1 1584 186 0 24 chr9 6849994 6850123 -111012504 + AluJb SINE Alu 1 132 -180 2513 36 13 0 chr9 6850123 6850430 -111012197 + AluY SINE Alu 1 311 0 1584 186 0 24 chr9 6850430 6850596 -111012031 + AluJb SINE Alu 132 289 -23 234 0 0 0 chr9 6850599 6850625 -111012002 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 574 248 101 50 chr9 6850628 6850662 -111011965 - Charlie1 DNA MER1_type -2517 244 213 2162 81 27 3 chr9 6850662 6850959 -111011668 + AluY SINE Alu 1 304 -7 574 248 101 50 chr9 6850959 6851122 -111011505 - Charlie1 DNA MER1_type -2548 213 37 1707 146 41 7 chr9 6851292 6851614 -111011013 + AluSx SINE Alu 1 312 0 2357 74 3 0 chr9 6851622 6851921 -111010706 + AluSp SINE Alu 1 300 -13 183 42 0 0 chr9 6851924 6851948 -111010679 + (TTA)n Simple_repeat Simple_repeat 1 24 0 2041 123 3 0 chr9 6852422 6852715 -111009912 - AluSp SINE Alu -19 294 1 1330 150 0 26 chr9 6852866 6853093 -111009534 + AluJo SINE Alu 91 311 -1 2198 107 3 0 chr9 6853101 6853410 -111009217 + AluSq SINE Alu 1 310 -3 2130 122 0 0 chr9 6853555 6853850 -111008777 + AluSg SINE Alu 1 295 -15 918 251 67 110 chr9 6854151 6854560 -111008067 - MLT1H LTR MaLR -11 538 154 1812 147 0 0 chr9 6854560 6854846 -111007781 + AluJb SINE Alu 1 286 -26 918 251 67 110 chr9 6854846 6854945 -111007682 - MLT1H LTR MaLR -395 154 52 1334 14 0 0 chr9 6855448 6855596 -111007031 + AluY SINE Alu 1 148 -163 252 0 0 0 chr9 6855699 6855727 -111006900 + (A)n Simple_repeat Simple_repeat 1 28 0 1954 121 28 0 chr9 6855779 6856068 -111006559 - AluSq SINE Alu -16 297 1 865 195 51 96 chr9 6856748 6856803 -111005824 - MSTD LTR MaLR 0 396 340 862 133 0 22 chr9 6856803 6856938 -111005689 - FLAM_C SINE Alu 0 133 2 865 195 51 96 chr9 6856938 6857155 -111005472 - MSTD LTR MaLR -56 340 87 2362 77 0 7 chr9 6857231 6857541 -111005086 - AluY SINE Alu -3 308 1 2110 132 0 0 chr9 6857567 6857878 -111004749 - AluSq SINE Alu -2 311 1 1820 145 7 7 chr9 6857959 6858269 -111004358 + AluJb SINE Alu 1 310 -2 1672 147 6 58 chr9 6858321 6858455 -111004172 + AluSx SINE Alu 1 140 -172 2165 102 0 0 chr9 6858455 6858749 -111003878 + AluY SINE Alu 1 294 -17 1672 147 6 58 chr9 6858749 6858941 -111003686 + AluSx SINE Alu 140 310 -2 591 236 52 17 chr9 6859504 6859678 -111002949 + MIR SINE MIR 77 256 -6 2216 73 0 0 chr9 6859800 6860088 -111002539 + AluSx SINE Alu 1 288 -24 1740 122 44 0 chr9 6863036 6863361 -110999266 + AluSx SINE Alu 1 337 0 2137 158 47 27 chr9 6863362 6863811 -110998816 - L1MB8 LINE L1 -72 6106 5649 180 0 0 0 chr9 6863811 6863831 -110998796 + (TA)n Simple_repeat Simple_repeat 1 20 0 2237 73 0 7 chr9 6863908 6864237 -110998390 - AluY SINE Alu 0 327 1 2139 95 13 36 chr9 6864368 6864674 -110997953 - AluSx SINE Alu -13 299 1 1292 209 60 11 chr9 6864702 6864985 -110997642 - AluJo SINE Alu -15 297 1 2107 73 52 11 chr9 6865177 6865463 -110997164 - AluSg SINE Alu -12 298 1 1749 64 0 0 chr9 6865464 6865683 -110996944 - L1PA6 LINE L1 0 6154 5936 768 171 39 0 chr9 6865707 6865836 -110996791 - AluJo SINE Alu -177 135 2 205 195 52 0 chr9 6865941 6866018 -110996609 + (TTATA)n Simple_repeat Simple_repeat 3 83 0 2271 104 3 7 chr9 6866028 6866325 -110996302 - AluSq SINE Alu -17 296 1 242 234 36 72 chr9 6866649 6866760 -110995867 + L2 LINE L2 2934 3040 -232 393 233 70 39 chr9 6866893 6867022 -110995605 + L1ME4a LINE L1 5987 6119 -2 2273 91 3 7 chr9 6867127 6867424 -110995203 - AluSp SINE Alu -17 296 1 268 200 67 40 chr9 6867863 6867938 -110994689 - L2 LINE L2 -33 3280 3204 285 274 89 66 chr9 6868700 6869003 -110993624 + L2 LINE L2 3002 3311 -2 399 161 23 23 chr9 6869038 6869125 -110993502 + MER112 DNA MER1_type 23 109 -151 2141 121 0 16 chr9 6869148 6869453 -110993174 - AluSx SINE Alu -11 301 2 23 33 0 0 chr9 6869457 6869487 -110993140 + AT_rich Low_complexity Low_complexity 1 30 0 657 150 154 91 chr9 6869491 6869711 -110992916 - MER46A DNA MER2_type -1 235 2 2362 86 0 10 chr9 6870492 6870806 -110991821 - AluY SINE Alu 0 311 1 1849 121 6 82 chr9 6870809 6871124 -110991503 - AluSx SINE Alu -21 291 1 22 35 0 0 chr9 6871265 6871294 -110991333 + AT_rich Low_complexity Low_complexity 1 29 0 732 221 117 29 chr9 6871811 6872051 -110990576 - L1MC4 LINE L1 -180 7862 7602 2407 100 3 0 chr9 6872129 6872438 -110990189 - AluSq SINE Alu -3 310 1 198 167 0 0 chr9 6872695 6872731 -110989896 + T-rich Low_complexity Low_complexity 2 37 0 317 259 14 61 chr9 6872813 6872960 -110989667 + MIR SINE MIR 71 210 -52 2101 136 7 0 chr9 6873265 6873575 -110989052 + AluSq SINE Alu 2 313 0 2483 88 0 0 chr9 6874133 6874439 -110988188 - AluSg SINE Alu -4 306 1 913 125 0 22 chr9 6874460 6874596 -110988031 - FLAM_C SINE Alu 0 133 1 2174 115 3 7 chr9 6874672 6874976 -110987651 - AluSx SINE Alu -9 303 1 1751 74 5 0 chr9 6875517 6875732 -110986895 - AluSg/x SINE Alu -14 296 81 2335 89 3 0 chr9 6875733 6876025 -110986602 - AluSp SINE Alu -19 294 2 2259 107 0 16 chr9 6876044 6876361 -110986266 - AluSx SINE Alu 0 312 1 1807 150 7 20 chr9 6876361 6876660 -110985967 - AluJo SINE Alu -5 307 12 2197 128 3 0 chr9 6876855 6877152 -110985475 + AluSx SINE Alu 1 298 -14 226 48 0 48 chr9 6877270 6877312 -110985315 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 1777 118 0 0 chr9 6877324 6877553 -110985074 - AluSx SINE Alu -83 229 1 1934 145 32 0 chr9 6877749 6878031 -110984596 + AluSx SINE Alu 2 292 -20 624 252 30 70 chr9 6878347 6878378 -110984249 - L1ME3A LINE L1 -294 5872 5841 2033 139 0 20 chr9 6878378 6878680 -110983947 - AluSx SINE Alu -14 298 3 624 252 30 70 chr9 6878680 6878878 -110983749 - L1ME3A LINE L1 -325 5841 5652 2255 93 7 0 chr9 6878896 6879185 -110983442 - AluSq SINE Alu -21 292 2 661 212 179 5 chr9 6879192 6879376 -110983251 - MER20 DNA MER1_type -3 216 1 770 199 0 57 chr9 6879448 6879624 -110983003 - FRAM SINE Alu -11 165 1 1891 96 88 7 chr9 6879633 6879905 -110982722 - AluSc SINE Alu -15 294 1 2101 99 20 10 chr9 6879964 6880267 -110982360 - AluSq SINE Alu -7 306 1 588 98 0 0 chr9 6881005 6881087 -110981540 - AluSg/x SINE Alu -20 292 211 965 142 24 41 chr9 6881282 6881451 -110981176 - AluJo/FRAM SINE Alu -13 299 134 2275 110 0 0 chr9 6881451 6881750 -110980877 - AluSx SINE Alu -8 304 6 2149 109 0 3 chr9 6881850 6882134 -110980493 + AluSx SINE Alu 1 283 -29 299 69 52 52 chr9 6882182 6882240 -110980387 - Alu SINE Alu 0 301 244 1072 111 0 7 chr9 6882244 6882388 -110980239 - AluSq/x SINE Alu -170 143 1 2312 64 42 0 chr9 6882399 6882682 -110979945 - AluY SINE Alu -16 295 1 226 242 91 0 chr9 6883061 6883127 -110979500 + LTR67 LTR ERVL 485 556 -1 2061 136 3 7 chr9 6883851 6884161 -110978466 + AluSq SINE Alu 1 309 -4 3199 186 18 46 chr9 6884584 6885187 -110977440 + MER82 DNA MER2_type 2 586 -67 2116 106 7 16 chr9 6885187 6885490 -110977137 - AluSq SINE Alu -13 300 1 3199 186 18 46 chr9 6885490 6885554 -110977073 + MER82 DNA MER2_type 586 650 -3 367 256 147 24 chr9 6885705 6885916 -110976711 + MIR SINE MIR 6 242 -20 206 369 39 8 chr9 6887089 6887219 -110975408 - L2 LINE L2 -1339 1975 1842 503 235 59 48 chr9 6887464 6887651 -110974976 - MIR SINE MIR -26 236 48 1327 138 0 15 chr9 6887703 6887898 -110974729 - AluSx SINE Alu -120 192 1 1953 202 23 32 chr9 6888417 6888708 -110973919 - MLT1C LTR MaLR 0 467 180 2309 92 0 7 chr9 6888708 6889003 -110973624 - AluSg SINE Alu -17 293 1 1953 202 23 32 chr9 6889003 6889182 -110973445 - MLT1C LTR MaLR -287 180 1 260 263 140 22 chr9 6890151 6890289 -110972338 + L1ME LINE L1 5320 5474 -647 2135 122 0 3 chr9 6890596 6890900 -110971727 - AluSx SINE Alu -9 303 1 549 261 142 89 chr9 6890905 6891593 -110971034 + L2 LINE L2 2422 3145 -168 1790 127 3 71 chr9 6892407 6892585 -110970042 - AluJb SINE Alu -9 303 155 2444 83 3 0 chr9 6892585 6892886 -110969741 - AluSp SINE Alu -11 302 1 1790 127 3 71 chr9 6892886 6893030 -110969597 - AluJb SINE Alu -157 155 3 1105 147 0 6 chr9 6893433 6893603 -110969024 + AluJb SINE Alu 3 171 -141 1811 88 88 47 chr9 6893769 6894066 -110968561 - AluY SINE Alu -2 309 1 261 83 0 0 chr9 6894168 6894204 -110968423 + (A)n Simple_repeat Simple_repeat 1 36 0 250 174 0 0 chr9 6894333 6894379 -110968248 + L2 LINE L2 3264 3309 -4 191 351 80 48 chr9 6894463 6894651 -110967976 + L2 LINE L2 2888 3081 -191 1768 149 26 4 chr9 6894651 6894919 -110967708 - AluSx SINE Alu -38 274 1 2175 128 3 0 chr9 6895254 6895560 -110967067 + AluSp SINE Alu 1 307 -6 2072 107 7 10 chr9 6895573 6895864 -110966763 + AluSx SINE Alu 3 292 -20 194 0 39 0 chr9 6895865 6895891 -110966736 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 278 139 0 0 chr9 6896033 6896076 -110966551 - AluSg SINE Alu -6 296 254 2136 112 0 0 chr9 6896076 6896352 -110966275 - AluSg SINE Alu -34 276 1 2419 85 0 9 chr9 6897192 6897508 -110965119 - AluSq SINE Alu 0 313 1 979 178 15 54 chr9 6897513 6897772 -110964855 - L1MB7 LINE L1 0 6184 5936 527 194 32 48 chr9 6897785 6897909 -110964718 - L2 LINE L2 -2 3311 3190 244 363 104 0 chr9 6897936 6898071 -110964556 - L2 LINE L2 -284 3029 2881 283 286 109 51 chr9 6898194 6898369 -110964258 - L2 LINE L2 -607 2707 2523 2206 122 0 3 chr9 6898992 6899295 -110963332 - AluSx SINE Alu -8 304 3 1900 174 0 0 chr9 6899333 6899637 -110962990 - AluJb SINE Alu -8 304 1 1632 95 14 0 chr9 6899829 6900051 -110962576 + AluSq SINE Alu 1 225 -88 1519 119 78 71 chr9 6900657 6900952 -110961675 - AluJb SINE Alu -15 297 1 10869 55 29 16 chr9 6901918 6903283 -110959344 - SVA Other Other -2 1384 2 228 67 0 0 chr9 6903296 6903326 -110959301 + (T)n Simple_repeat Simple_repeat 1 30 0 1703 157 13 43 chr9 6903606 6903751 -110958876 + AluJo SINE Alu 1 134 -178 2101 138 10 0 chr9 6903751 6904055 -110958572 + AluSx SINE Alu 1 307 -5 1703 157 13 43 chr9 6904055 6904209 -110958418 + AluJo SINE Alu 134 291 -21 1979 137 0 16 chr9 6904276 6904591 -110958036 - AluJb SINE Alu 0 312 3 210 257 57 0 chr9 6904718 6904788 -110957839 + MIR SINE MIR 62 135 -127 260 231 51 0 chr9 6904826 6904904 -110957723 + L1ME3A LINE L1 5003 5084 -1062 2242 64 68 14 chr9 6904907 6905202 -110957425 - AluY SINE Alu 0 311 1 345 24 0 0 chr9 6905284 6905326 -110957301 + (TC)n Simple_repeat Simple_repeat 2 43 0 1663 255 31 103 chr9 6905382 6905488 -110957139 + L1ME3A LINE L1 5263 5375 -795 2324 91 3 3 chr9 6905488 6905786 -110956841 + AluSq SINE Alu 1 298 -15 1663 255 31 103 chr9 6905786 6906282 -110956345 + L1ME3A LINE L1 5375 5770 -400 1735 145 80 0 chr9 6906282 6906572 -110956055 - AluSx SINE Alu 0 311 1 1663 255 31 103 chr9 6906572 6906946 -110955681 + L1ME3A LINE L1 5770 6170 0 2141 94 3 41 chr9 6906956 6907276 -110955351 + AluSc SINE Alu 1 308 -1 790 163 31 0 chr9 6907295 6907424 -110955203 + FLAM_C SINE Alu 1 133 0 1846 156 28 3 chr9 6907500 6907788 -110954839 - AluSx SINE Alu -17 295 1 814 284 10 0 chr9 6907890 6908098 -110954529 - MER63A DNA MER1_type 0 210 1 2260 98 3 3 chr9 6908143 6908440 -110954187 + AluSg SINE Alu 1 297 -13 2283 98 0 0 chr9 6908568 6908864 -110953763 - AluSg SINE Alu -14 296 1 306 262 219 16 chr9 6908906 6909089 -110953538 + MIR SINE MIR 34 253 -9 1868 180 158 68 chr9 6909836 6909878 -110952749 - MLT1F1 LTR MaLR 0 567 530 2268 101 3 0 chr9 6909878 6910202 -110952425 + AluSp SINE Alu 1 325 0 1868 180 158 68 chr9 6910202 6910525 -110952102 - MLT1F1 LTR MaLR -37 530 237 504 45 0 0 chr9 6910525 6910592 -110952035 + (TCTCCC)n Simple_repeat Simple_repeat 1 67 0 8756 24 9 264 chr9 6910592 6912376 -110950251 + SVA Other Other 57 1386 0 1868 180 158 68 chr9 6912376 6912518 -110950109 - MLT1F1 LTR MaLR -329 238 11 1789 166 31 0 chr9 6913382 6913672 -110948955 + AluJb SINE Alu 1 299 -13 228 299 130 0 chr9 6913960 6914037 -110948590 + L2 LINE L2 3186 3272 0 1810 153 7 7 chr9 6914256 6914565 -110948062 + AluJb SINE Alu 2 310 0 2012 83 8 8 chr9 6914826 6915090 -110947537 - AluSg SINE Alu -19 291 28 462 349 79 4 chr9 6915281 6915510 -110947117 - MIR SINE MIR -15 247 2 1111 90 28 0 chr9 6915769 6915914 -110946713 + AluSg/x SINE Alu 150 298 -14 2117 126 77 0 chr9 6916071 6916381 -110946246 - MER1B DNA MER1_type 0 337 4 2196 89 13 16 chr9 6916559 6916873 -110945754 + AluSp SINE Alu 1 313 0 551 186 93 62 chr9 6916873 6916994 -110945633 - FLAM_C SINE Alu -174 128 1 286 286 70 29 chr9 6917626 6917797 -110944830 - L1ME LINE L1 -406 5715 5538 25 0 0 0 chr9 6918851 6918876 -110943751 + AT_rich Low_complexity Low_complexity 1 25 0 22 70 0 0 chr9 6919016 6919059 -110943568 + AT_rich Low_complexity Low_complexity 1 43 0 747 170 0 0 chr9 6919067 6919179 -110943448 - FLAM_C SINE Alu -30 113 2 341 281 38 72 chr9 6919185 6919270 -110943357 - L1MC4 LINE L1 -1 8041 7955 932 165 83 61 chr9 6919270 6919500 -110943127 + MER46A DNA MER2_type 1 235 -1 341 281 38 72 chr9 6919500 6919649 -110942978 - L1MC4 LINE L1 -87 7955 7815 255 119 203 0 chr9 6919654 6919713 -110942914 - L1MC4 LINE L1 -273 7769 7699 333 228 22 73 chr9 6919755 6919891 -110942736 - L1MC4 LINE L1 -725 7317 7189 734 200 35 102 chr9 6919896 6920227 -110942400 - L1ME3A LINE L1 -1 6169 5865 570 210 158 9 chr9 6920255 6920496 -110942131 - L1ME3A LINE L1 -556 5606 5328 247 276 105 6 chr9 6920670 6920851 -110941776 + L1MC5 LINE L1 7628 7826 -135 1864 155 7 10 chr9 6920874 6921170 -110941457 - AluJo SINE Alu -17 295 1 367 284 22 33 chr9 6921324 6921429 -110941198 - L1ME4a LINE L1 -9 6112 6008 2253 110 0 0 chr9 6921429 6921730 -110940897 - AluSg SINE Alu -9 301 1 367 284 22 33 chr9 6921730 6921807 -110940820 - L1ME4a LINE L1 -113 6008 5932 210 227 29 39 chr9 6922368 6922465 -110940162 - MIR SINE MIR -67 141 70 201 221 126 63 chr9 6923864 6923959 -110938668 - L2 LINE L2 -208 3064 2964 7439 51 2 0 chr9 6924388 6925287 -110937340 - L1PA6 LINE L1 0 6154 5254 1849 134 42 0 chr9 6925316 6925600 -110937027 - AluSx SINE Alu -16 296 1 580 256 94 6 chr9 6925802 6925982 -110936645 + MER58A DNA MER1_type 28 223 -1 1353 155 52 174 chr9 6928150 6928527 -110934100 - Charlie1b DNA MER1_type -2238 523 238 2241 111 0 7 chr9 6928527 6928834 -110933793 + AluSq SINE Alu 1 305 -8 1353 155 52 174 chr9 6928834 6929046 -110933581 - Charlie1b DNA MER1_type -2523 238 2 1791 186 0 3 chr9 6929465 6929777 -110932850 - AluJb SINE Alu -1 311 1 399 307 108 25 chr9 6929991 6930232 -110932395 - L1ME4a LINE L1 -43 6078 5818 2302 103 0 3 chr9 6930249 6930551 -110932076 + AluSx SINE Alu 1 301 -11 278 302 101 16 chr9 6930857 6930986 -110931641 + MIR3 SINE MIR 67 206 -2 293 299 186 26 chr9 6931474 6931705 -110930922 + L3 LINE CR1 891 1158 -419 2415 74 0 0 chr9 6931816 6932112 -110930515 - AluY SINE Alu -15 296 1 252 339 43 38 chr9 6932118 6932254 -110930373 + L3 LINE CR1 1372 1511 -66 2260 98 3 3 chr9 6932254 6932550 -110930077 + AluSp SINE Alu 1 296 -17 252 339 43 38 chr9 6932550 6932599 -110930028 + L3 LINE CR1 1511 1558 -19 412 247 129 32 chr9 6933145 6933331 -110929296 - MIR3 SINE MIR -4 204 1 854 286 51 83 chr9 6934836 6935026 -110927601 - MLT1J LTR MaLR 0 511 316 1872 117 92 0 chr9 6935026 6935307 -110927320 - AluSx SINE Alu -5 307 1 854 286 51 83 chr9 6935307 6935644 -110926983 - MLT1J LTR MaLR -195 316 1 2398 54 3 10 chr9 6935723 6936019 -110926608 + AluY SINE Alu 1 294 -17 2649 61 0 0 chr9 6936199 6936510 -110926117 - AluY SINE Alu 0 311 1 2128 116 0 35 chr9 6936510 6936821 -110925806 - AluSq SINE Alu -13 300 1 483 309 57 10 chr9 6937309 6937503 -110925124 + MIR SINE MIR 54 256 -6 1830 158 20 3 chr9 6937829 6938121 -110924506 - AluSx SINE Alu -15 297 1 262 0 53 0 chr9 6939448 6939486 -110923141 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 665 106 0 4 chr9 6939957 6940176 -110922451 + AluSx SINE Alu 3 301 -11 818 278 69 31 chr9 6940423 6940844 -110921783 - L1ME3 LINE L1 -196 5949 5513 1692 197 3 0 chr9 6940848 6941142 -110921485 - AluJo SINE Alu -17 295 1 532 200 159 3 chr9 6941158 6941308 -110921319 - L1MB7 LINE L1 -9 6155 5992 360 220 136 67 chr9 6941307 6941659 -110920968 - L1ME3 LINE L1 -686 5475 5102 * 296 245 50 80 chr9 6941708 6941908 -110920719 - L1ME3 LINE L1 -5016 1103 910 3820 174 42 52 chr9 6992441 6992602 -110870025 - L1M3f LINE L1 -4383 945 784 1989 127 6 41 chr9 6992602 6992776 -110869851 - AluSx SINE Alu -4 308 148 2278 49 39 29 chr9 6992776 6993084 -110869543 - AluY SINE Alu 0 311 1 1989 127 6 41 chr9 6993084 6993224 -110869403 - AluSx SINE Alu -164 148 5 3820 174 42 52 chr9 6993224 6993940 -110868687 - L1M3f LINE L1 -4544 784 77 384 240 0 0 chr9 6993940 6994061 -110868566 + (TA)n Simple_repeat Simple_repeat 1 121 0 2210 98 3 10 chr9 6994061 6994357 -110868270 - AluSc SINE Alu -15 294 1 458 138 0 58 chr9 6994358 6994445 -110868182 - L1M3f LINE L1 -5241 87 6 245 337 41 51 chr9 6994742 6994840 -110867787 - L2 LINE L2 -19 3253 3157 1543 203 42 3 chr9 6995479 6995809 -110866818 + MER2 DNA MER2_type 2 344 0 501 295 101 4 chr9 6996488 6996746 -110865881 - LTR16A LTR ERVL 0 450 168 184 340 85 35 chr9 6997417 6997558 -110865069 + MIR SINE MIR 21 168 -94 22 35 0 0 chr9 6998449 6998478 -110864149 + AT_rich Low_complexity Low_complexity 1 29 0 2931 90 7 7 chr9 6999455 6999900 -110862727 - L1P LINE L1 -3470 2676 2232 806 158 0 7 chr9 6999900 7000039 -110862588 - Tigger1 DNA MER2_type -1217 1201 1064 1149 112 0 0 chr9 7000039 7000191 -110862436 - AluSp SINE Alu -14 299 148 1514 112 5 27 chr9 7000191 7000414 -110862213 - AluSx SINE Alu -94 218 1 2852 135 100 27 chr9 7000414 7001015 -110861612 - Tigger1 DNA MER2_type -1346 1072 428 522 43 0 0 chr9 7001015 7001084 -110861543 + (GA)n Simple_repeat Simple_repeat 1 69 0 1517 187 59 0 chr9 7001084 7001405 -110861222 - Tigger1 DNA MER2_type -2076 342 3 830 112 0 70 chr9 7001915 7002058 -110860569 + FLAM_C SINE Alu 1 133 0 271 57 0 0 chr9 7003350 7003385 -110859242 - U2 snRNA snRNA -153 35 1 2313 87 0 0 chr9 7004322 7004611 -110858016 - AluY SINE Alu -22 289 1 187 182 0 0 chr9 7004613 7004646 -110857981 + MIR3 SINE MIR 154 186 -22 22 0 0 0 chr9 7006606 7006628 -110855999 + AT_rich Low_complexity Low_complexity 1 22 0 188 206 123 41 chr9 7006760 7006833 -110855794 + MIR SINE MIR 75 153 -55 21 0 0 0 chr9 7007436 7007457 -110855170 + AT_rich Low_complexity Low_complexity 1 21 0 336 48 0 0 chr9 7009821 7009863 -110852764 + (TG)n Simple_repeat Simple_repeat 1 42 0 207 240 0 20 chr9 7011679 7011729 -110850898 + CT-rich Low_complexity Low_complexity 4 52 0 1125 184 45 58 chr9 7012054 7012364 -110850263 - L1ME1 LINE L1 -4 6162 5857 1733 157 35 3 chr9 7013371 7013531 -110849096 - AluSx SINE Alu -16 296 122 2223 117 10 7 chr9 7013531 7013840 -110848787 - AluSg SINE Alu 0 310 1 1733 157 35 3 chr9 7013840 7013966 -110848661 - AluSx SINE Alu -190 122 1 2768 7 0 3 chr9 7015830 7016136 -110846491 - AluYa5 SINE Alu -6 305 1 360 0 0 0 chr9 7016260 7016300 -110846327 + (TG)n Simple_repeat Simple_repeat 1 40 0 462 277 35 7 chr9 7017370 7017511 -110845116 + MIR SINE MIR 98 242 -20 2102 188 25 11 chr9 7018343 7018821 -110843806 + L1MB7 LINE L1 5691 6175 -9 21 0 0 0 chr9 7018954 7018975 -110843652 + AT_rich Low_complexity Low_complexity 1 21 0 422 195 0 0 chr9 7019017 7019104 -110843523 + L1ME2 LINE L1 6068 6154 -10 22 35 0 0 chr9 7021340 7021369 -110841258 + AT_rich Low_complexity Low_complexity 1 29 0 905 252 96 15 chr9 7022270 7022603 -110840024 - MLT1E2 LTR MaLR 0 626 267 331 225 0 25 chr9 7022601 7022681 -110839946 - MLT1E2 LTR MaLR -407 98 21 * 759 161 22 29 chr9 7022755 7022892 -110839735 + AluJ SINE Alu 1 136 -176 32 0 0 0 chr9 7023605 7023637 -110838990 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr9 7023702 7023723 -110838904 + AT_rich Low_complexity Low_complexity 1 21 0 981 189 0 0 chr9 7026300 7026485 -110836142 - L1MC1 LINE L1 -12 6321 6137 781 139 0 15 chr9 7026529 7026666 -110835961 - L1MC1 LINE L1 -184 6149 6015 252 0 0 0 chr9 7026679 7026707 -110835920 + (TG)n Simple_repeat Simple_repeat 2 29 0 879 184 6 12 chr9 7027621 7027784 -110834843 + AluJ SINE Alu 136 297 -15 212 305 95 38 chr9 7028922 7029027 -110833600 - L2 LINE L2 -13 3259 3149 285 332 51 16 chr9 7029035 7029175 -110833452 + MER5B DNA MER1_type 38 175 -3 265 277 70 7 chr9 7029578 7029704 -110832923 + MIR SINE MIR 48 151 -57 472 321 132 35 chr9 7030478 7030818 -110831809 + L1MC/D LINE L1 5431 5803 -318 2134 134 3 0 chr9 7031093 7031392 -110831235 + AluSx SINE Alu 1 300 -12 290 49 0 0 chr9 7033638 7033679 -110828948 - AluJ/F(R)AM SINE Alu -114 197 157 1177 174 0 15 chr9 7033681 7033876 -110828751 - AluJo SINE Alu -119 193 2 251 234 78 13 chr9 7034243 7034320 -110828307 + L1MC/D LINE L1 5800 5881 -1927 387 261 203 39 chr9 7035862 7036069 -110826558 + MIR SINE MIR 12 252 -10 21 36 0 0 chr9 7036740 7036768 -110825859 + AT_rich Low_complexity Low_complexity 1 28 0 26 50 0 0 chr9 7036919 7036959 -110825668 + AT_rich Low_complexity Low_complexity 1 40 0 522 280 63 0 chr9 7037417 7037560 -110825067 - MIR SINE MIR -3 259 108 267 174 167 72 chr9 7037589 7037727 -110824900 + L1ME4a LINE L1 5314 5464 -2344 486 275 53 8 chr9 7037804 7038048 -110824579 + L1ME4a LINE L1 5595 5849 -272 2118 110 3 41 chr9 7040977 7041294 -110821333 - AluSp SINE Alu -8 305 1 1335 210 24 66 chr9 7041500 7041881 -110820746 + MLT1A1 LTR MaLR 1 365 0 839 138 239 0 chr9 7043315 7043482 -110819145 - AluJo SINE Alu -105 207 1 1854 273 150 16 chr9 7044159 7044925 -110817702 + L2 LINE L2 837 1705 -1609 5296 116 15 29 chr9 7044947 7045781 -110816846 - L1PA16 LINE L1 -13 6153 5309 2199 103 3 7 chr9 7045781 7046073 -110816554 - AluSg SINE Alu -19 291 1 5296 116 15 29 chr9 7046073 7046141 -110816486 - L1PA16 LINE L1 -857 5309 5242 599 59 0 12 chr9 7046141 7046226 -110816401 + (TTTC)n Simple_repeat Simple_repeat 1 84 0 5296 116 15 29 chr9 7046226 7046340 -110816287 - L1PA16 LINE L1 -924 5242 5160 310 325 57 46 chr9 7046341 7046451 -110816176 + L2 LINE L2 1701 1808 -1506 501 62 0 0 chr9 7046451 7046516 -110816111 + (TCTA)n Simple_repeat Simple_repeat 1 65 0 2115 111 4 0 chr9 7046517 7046797 -110815830 - AluSq SINE Alu -32 281 1 310 325 57 46 chr9 7046797 7046878 -110815749 + L2 LINE L2 1807 1896 -1418 1076 190 143 60 chr9 7046892 7047277 -110815350 - LTR8A LTR ERV1 0 727 311 1380 121 43 5 chr9 7047278 7047485 -110815142 + AluSg/x SINE Alu 77 291 -21 929 160 166 22 chr9 7047523 7047858 -110814769 - LTR29 LTR ERV1 -198 424 1 1946 276 122 41 chr9 7047877 7048940 -110813687 + L2 LINE L2 1937 3090 -223 499 224 65 0 chr9 7048942 7049049 -110813578 + L2 LINE L2 3200 3313 0 1842 185 0 0 chr9 7049387 7049685 -110812942 + AluJo SINE Alu 1 298 -14 22 35 0 0 chr9 7050151 7050180 -110812447 + AT_rich Low_complexity Low_complexity 1 29 0 260 252 41 16 chr9 7051196 7051319 -110811308 + LTR33 LTR ERVL 1 126 -395 241 294 55 40 chr9 7051407 7051608 -110811019 + LTR33 LTR ERVL 303 506 -15 303 286 29 0 chr9 7052320 7052390 -110810237 + C-rich Low_complexity Low_complexity 3 74 0 450 216 29 0 chr9 7052411 7052513 -110810114 - FLAM_C SINE Alu -26 107 3 459 0 0 0 chr9 7054012 7054063 -110808564 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 1954 153 0 0 chr9 7054064 7054352 -110808275 - AluSx SINE Alu -24 288 1 235 350 91 0 chr9 7054736 7054879 -110807748 + L2 LINE L2 1813 1968 -1346 517 280 242 22 chr9 7054883 7055247 -110807380 + L2 LINE L2 1723 2166 -1148 308 233 100 33 chr9 7055249 7055369 -110807258 + L2 LINE L2 3159 3286 -27 21 0 0 0 chr9 7055522 7055543 -110807084 + AT_rich Low_complexity Low_complexity 1 21 0 204 40 0 0 chr9 7056388 7056413 -110806214 + (T)n Simple_repeat Simple_repeat 1 25 0 207 305 102 31 chr9 7056527 7056655 -110805972 - MIR SINE MIR -92 170 34 365 187 78 12 chr9 7057409 7057575 -110805052 + (TA)n Simple_repeat Simple_repeat 2 178 0 332 199 54 36 chr9 7057520 7057686 -110804941 + (TATAA)n Simple_repeat Simple_repeat 5 173 0 * 251 254 45 0 chr9 7057768 7057835 -110804792 - MER5B DNA MER1_type -7 171 102 1915 170 0 0 chr9 7058429 7058723 -110803904 - AluJb SINE Alu -18 294 1 223 203 95 0 chr9 7059522 7059596 -110803031 - MIR SINE MIR -132 130 50 722 220 56 33 chr9 7059619 7059833 -110802794 + MER20 DNA MER1_type 1 219 0 324 143 0 0 chr9 7060771 7060827 -110801800 - Alu SINE Alu 0 300 245 23 0 0 0 chr9 7061077 7061100 -110801527 + AT_rich Low_complexity Low_complexity 1 23 0 1769 83 36 7 chr9 7061100 7061378 -110801249 - L1MA5A LINE L1 -1 6296 6011 420 276 70 68 chr9 7062071 7062455 -110800172 + L1ME4a LINE L1 5477 5861 -260 189 107 0 0 chr9 7062462 7062490 -110800137 + (TA)n Simple_repeat Simple_repeat 1 28 0 2223 100 3 0 chr9 7062510 7062799 -110799828 - AluSq SINE Alu -23 290 1 2631 85 26 8 chr9 7066073 7066461 -110796166 + L1MA1 LINE L1 5908 6302 0 718 231 75 6 chr9 7066597 7066770 -110795857 + MER58A DNA MER1_type 39 223 -1 21 0 0 0 chr9 7068143 7068164 -110794463 + AT_rich Low_complexity Low_complexity 1 21 0 2112 122 3 10 chr9 7068362 7068658 -110793969 + AluSx SINE Alu 1 294 -18 711 227 91 91 chr9 7069236 7069796 -110792831 - MER69 DNA AcHobo -207 2319 1760 486 281 52 30 chr9 7069837 7070068 -110792559 - MER69 DNA AcHobo -914 312 77 26 0 0 0 chr9 7070495 7070521 -110792106 + AT_rich Low_complexity Low_complexity 1 26 0 349 290 84 39 chr9 7070673 7070828 -110791799 + MER5B DNA MER1_type 17 178 0 10115 46 18 32 chr9 7071432 7072727 -110789900 - SVA Other Other -6 1380 104 1430 183 129 0 chr9 7072970 7073233 -110789394 - AluJb SINE Alu -5 297 1 1306 206 14 27 chr9 7073487 7073779 -110788848 + AluJb SINE Alu 1 288 -24 260 217 0 0 chr9 7074204 7074264 -110788363 + A-rich Low_complexity Low_complexity 1 60 0 360 0 0 0 chr9 7074337 7074377 -110788250 + (CA)n Simple_repeat Simple_repeat 2 41 0 287 254 0 44 chr9 7074640 7074754 -110787873 - Charlie8 DNA MER1_type -2258 159 51 274 238 12 0 chr9 7074763 7074843 -110787784 + (CA)n Simple_repeat Simple_repeat 2 82 0 576 110 134 0 chr9 7075242 7075369 -110787258 + L1P LINE L1 5254 5397 -764 948 146 139 0 chr9 7075369 7075527 -110787100 + AluSx SINE Alu 19 198 -114 24 32 0 0 chr9 7075871 7075902 -110786725 + AT_rich Low_complexity Low_complexity 1 31 0 203 214 34 51 chr9 7076423 7076540 -110786087 + (CATATA)n Simple_repeat Simple_repeat 3 117 0 2093 118 0 0 chr9 7076699 7076987 -110785640 + AluSx SINE Alu 1 288 -24 21 0 0 0 chr9 7076987 7077008 -110785619 + AT_rich Low_complexity Low_complexity 1 21 0 271 156 0 0 chr9 7077499 7077544 -110785083 + Alu SINE Alu 2 46 -254 29 0 0 0 chr9 7077552 7077581 -110785046 + AT_rich Low_complexity Low_complexity 1 29 0 532 274 117 48 chr9 7077768 7077998 -110784629 - MIR SINE MIR -11 251 6 1331 110 0 6 chr9 7079113 7079295 -110783332 + AluSg/x SINE Alu 119 299 -11 28 29 0 0 chr9 7079808 7079843 -110782784 + AT_rich Low_complexity Low_complexity 1 35 0 2414 69 0 10 chr9 7079949 7080253 -110782374 + AluSc SINE Alu 1 301 -8 1136 153 6 0 chr9 7080253 7080430 -110782197 + AluJb SINE Alu 134 311 -1 345 47 0 0 chr9 7080485 7080528 -110782099 + (TG)n Simple_repeat Simple_repeat 1 43 0 647 174 16 0 chr9 7080528 7080649 -110781978 + L1MC1 LINE L1 6210 6332 -1 1128 151 170 0 chr9 7080769 7080987 -110781640 - AluJo SINE Alu -57 255 1 1539 166 95 14 chr9 7082315 7082598 -110780029 - AluJo SINE Alu -6 306 1 311 188 16 16 chr9 7082861 7082925 -110779702 - MER20 DNA MER1_type -154 65 2 186 43 0 0 chr9 7083753 7083776 -110778851 + (CAAAAA)n Simple_repeat Simple_repeat 4 26 0 621 260 158 0 chr9 7085051 7085228 -110777399 + MIR SINE MIR 34 238 -24 21 36 0 0 chr9 7086068 7086096 -110776531 + AT_rich Low_complexity Low_complexity 1 28 0 3754 60 0 4 chr9 7086128 7086611 -110776016 - L1PA5 LINE L1 0 6154 5674 1873 57 0 4 chr9 7086611 7086841 -110775786 + AluY SINE Alu 73 301 -10 1171 108 0 0 chr9 7086848 7087005 -110775622 + AluSg/x SINE Alu 136 292 -18 269 193 24 12 chr9 7087323 7087406 -110775221 + (TA)n Simple_repeat Simple_repeat 2 85 0 794 283 87 49 chr9 7087479 7087973 -110774654 - MLT2B1 LTR ERVL -7 513 1 467 198 0 0 chr9 7087975 7088076 -110774551 + L1M4 LINE L1 3821 3921 -2225 414 268 82 64 chr9 7088137 7088230 -110774397 + L1M4 LINE L1 4013 4103 -2043 2257 50 43 0 chr9 7088230 7088509 -110774118 - AluYa5 SINE Alu -20 291 1 414 268 82 64 chr9 7088509 7088635 -110773992 + L1M4 LINE L1 4103 4236 -1910 634 282 60 23 chr9 7088791 7089177 -110773450 + L1M4 LINE L1 4945 5344 -802 2177 113 3 3 chr9 7089181 7089482 -110773145 + AluSx SINE Alu 1 301 -11 218 328 89 89 chr9 7089859 7090106 -110772521 + MIR SINE MIR 13 259 -3 23 68 0 0 chr9 7090125 7090169 -110772458 + AT_rich Low_complexity Low_complexity 1 44 0 668 186 34 8 chr9 7090240 7090358 -110772269 + FLAM_C SINE Alu 3 123 -20 1977 144 3 0 chr9 7090991 7091276 -110771351 - AluSx SINE Alu -26 286 1 21 0 0 0 chr9 7091754 7091775 -110770852 + AT_rich Low_complexity Low_complexity 1 21 0 371 246 39 14 chr9 7091904 7092101 -110770526 - MLT1K LTR MaLR -170 418 165 21 57 0 0 chr9 7093083 7093118 -110769509 + AT_rich Low_complexity Low_complexity 1 35 0 377 312 111 11 chr9 7093965 7094154 -110768473 - L2 LINE L2 -6 3307 3100 180 152 0 0 chr9 7094296 7094329 -110768298 + (TA)n Simple_repeat Simple_repeat 1 33 0 712 189 0 15 chr9 7095253 7095385 -110767242 - FLAM_C SINE Alu -13 130 1 321 262 8 74 chr9 7096113 7096235 -110766392 + MIR SINE MIR 60 173 -89 2093 121 7 0 chr9 7096401 7096698 -110765929 - AluSx SINE Alu -13 299 1 277 241 0 100 chr9 7097496 7097611 -110765016 + MIR SINE MIR 34 137 -71 2141 114 14 0 chr9 7097806 7098095 -110764532 + AluSx SINE Alu 7 299 -13 802 122 0 0 chr9 7099053 7099168 -110763459 - AluJo SINE Alu -176 136 22 21 0 0 0 chr9 7099343 7099364 -110763263 + AT_rich Low_complexity Low_complexity 1 21 0 583 280 0 14 chr9 7100133 7100276 -110762351 - MIR SINE MIR -74 188 48 1307 186 29 7 chr9 7100603 7100877 -110761750 - MLT1-int LTR MaLR -456 915 636 496 193 158 0 chr9 7103872 7104043 -110758584 - L1ME4a LINE L1 0 6121 5924 495 264 57 16 chr9 7104434 7104627 -110758000 - MER112 DNA MER1_type -58 202 2 659 179 8 0 chr9 7105496 7105613 -110757014 + FLAM_C SINE Alu 1 118 -15 486 0 0 0 chr9 7105615 7105669 -110756958 + (CA)n Simple_repeat Simple_repeat 2 55 0 211 191 34 34 chr9 7105841 7105930 -110756697 + T-rich Low_complexity Low_complexity 2 90 0 337 301 164 44 chr9 7107061 7107403 -110755224 + L2 LINE L2 2465 2847 -467 293 336 22 111 chr9 7107458 7107684 -110754943 - L2 LINE L2 -108 3164 2959 2022 139 0 23 chr9 7107738 7108047 -110754580 - AluSx SINE Alu -10 302 1 213 213 0 0 chr9 7108262 7108309 -110754318 + (TG)n Simple_repeat Simple_repeat 2 48 0 951 170 16 6 chr9 7108971 7109153 -110753474 - L1MD1 LINE L1 -5 6237 6054 1706 162 29 35 chr9 7109931 7110245 -110752382 + AluJo SINE Alu 1 312 0 483 18 0 0 chr9 7110716 7110772 -110751855 + (TCCA)n Simple_repeat Simple_repeat 3 58 0 722 308 106 22 chr9 7110773 7111140 -110751487 + L2 LINE L2 2884 3281 -32 1577 180 10 17 chr9 7111841 7112135 -110750492 - AluJo SINE Alu -20 292 1 1554 178 20 49 chr9 7113136 7113440 -110749187 - AluJb SINE Alu -15 297 3 668 200 0 8 chr9 7113810 7113940 -110748687 + FLAM_A SINE Alu 1 129 -4 1734 166 52 28 chr9 7116021 7116346 -110746281 - MER1B DNA MER1_type -6 333 1 249 98 0 0 chr9 7117384 7117425 -110745202 + (CA)n Simple_repeat Simple_repeat 2 42 0 254 253 27 73 chr9 7117485 7117635 -110744992 + L1ME LINE L1 5742 5884 -237 2472 58 0 0 chr9 7117733 7118026 -110744601 - AluY SINE Alu -18 293 1 902 89 7 30 chr9 7118048 7118183 -110744444 - L1PB4 LINE L1 -13 6143 6012 253 284 0 11 chr9 7118950 7119045 -110743582 + L1MEd LINE L1 18 111 -6008 222 321 0 37 chr9 7119127 7119208 -110743419 + MIR SINE MIR 116 193 -69 226 240 53 67 chr9 7119584 7119659 -110742968 + L1MEd LINE L1 549 622 -5497 284 273 121 15 chr9 7119686 7119818 -110742809 + MIR3 SINE MIR 31 176 -32 2045 133 0 7 chr9 7120573 7120905 -110741722 + AluSx SINE Alu 1 312 0 32 43 0 0 chr9 7121396 7121442 -110741185 + AT_rich Low_complexity Low_complexity 1 46 0 25 31 0 0 chr9 7122239 7122271 -110740356 + AT_rich Low_complexity Low_complexity 1 32 0 201 219 24 0 chr9 7122770 7122811 -110739816 - MIR SINE MIR -151 111 70 2084 130 0 0 chr9 7123647 7123940 -110738687 - AluSx SINE Alu -13 299 7 533 215 75 5 chr9 7124068 7124254 -110738373 - L1MA7 LINE L1 0 6291 6093 398 339 0 8 chr9 7124497 7124618 -110738009 - MIR SINE MIR -122 140 21 1862 145 0 17 chr9 7124629 7124919 -110737708 - AluSx SINE Alu -27 285 1 22 0 0 0 chr9 7125069 7125091 -110737536 + AT_rich Low_complexity Low_complexity 1 22 0 2833 119 54 29 chr9 7126629 7126907 -110735720 - LTR22B LTR ERVK 0 492 195 2420 80 3 0 chr9 7126907 7127206 -110735421 + AluSq SINE Alu 1 300 -13 2833 119 54 29 chr9 7127206 7127407 -110735220 - LTR22B LTR ERVK -296 196 1 27 0 0 0 chr9 7128685 7128712 -110733915 + AT_rich Low_complexity Low_complexity 1 27 0 568 181 49 62 chr9 7129407 7129650 -110732977 - Charlie1 DNA MER1_type 0 2761 2522 1504 209 16 16 chr9 7129658 7129979 -110732648 + L1M3e LINE L1 2 322 -6708 2538 238 39 62 chr9 7129979 7131025 -110731602 + L1M3e LINE L1 1216 2245 -4792 1511 270 109 10 chr9 7131026 7131522 -110731105 - Charlie1a DNA MER1_type -907 548 4 1929 163 116 2 chr9 7131539 7131943 -110730684 + Tigger2 DNA MER2_type 1 450 -2268 2007 142 10 10 chr9 7132517 7132826 -110729801 + AluSq SINE Alu 3 311 -2 191 286 14 43 chr9 7132892 7132962 -110729665 + L2 LINE L2 3201 3268 -4 1317 188 7 44 chr9 7133824 7134095 -110728532 - AluJo SINE Alu -14 298 38 306 0 0 0 chr9 7136669 7136703 -110725924 + (CA)n Simple_repeat Simple_repeat 2 35 0 39 50 0 0 chr9 7137234 7137294 -110725333 + AT_rich Low_complexity Low_complexity 1 60 0 2434 82 0 0 chr9 7137873 7138176 -110724451 - AluY SINE Alu -8 303 1 2124 127 3 0 chr9 7138176 7138475 -110724152 - AluSx SINE Alu -11 301 1 1949 164 0 3 chr9 7138686 7138985 -110723642 - AluJo SINE Alu -13 299 2 22 35 0 0 chr9 7139230 7139259 -110723368 + AT_rich Low_complexity Low_complexity 1 29 0 1664 170 112 3 chr9 7139799 7140111 -110722516 - MER7A DNA MER2_type 0 346 3 22 0 0 0 chr9 7142309 7142331 -110720296 + AT_rich Low_complexity Low_complexity 1 22 0 1710 137 19 55 chr9 7142332 7142711 -110719916 - L1MA2 LINE L1 -3 7720 7356 301 70 47 0 chr9 7142721 7142764 -110719863 - L1M LINE L1 -895 6826 6782 189 0 0 0 chr9 7142778 7142799 -110719828 + (TG)n Simple_repeat Simple_repeat 2 22 0 20479 170 28 16 chr9 7142803 7142814 -110719813 - L1MA2 LINE L1 -762 6803 6794 2221 83 24 0 chr9 7142814 7143102 -110719525 - AluSx SINE Alu -17 295 1 20479 170 28 16 chr9 7143102 7145999 -110716628 - L1MA2 LINE L1 -771 6794 3933 5598 39 3 0 chr9 7145999 7146673 -110715954 - L1PA4 LINE L1 -8 6147 5472 20479 170 28 16 chr9 7146673 7147580 -110715047 - L1MA2 LINE L1 -3632 3933 3038 2033 142 3 3 chr9 7147580 7147891 -110714736 + AluSx SINE Alu 1 311 -1 20479 170 28 16 chr9 7147891 7150783 -110711844 - L1MA2 LINE L1 -4527 3038 19 39 60 0 0 chr9 7151203 7151270 -110711357 + AT_rich Low_complexity Low_complexity 1 67 0 1638 156 28 0 chr9 7152013 7152302 -110710325 + L1MC1 LINE L1 6037 6333 0 402 57 0 0 chr9 7152780 7152833 -110709794 + (TTTA)n Simple_repeat Simple_repeat 4 56 0 2053 117 7 0 chr9 7152835 7153118 -110709509 - AluSx SINE Alu -27 285 1 213 196 0 0 chr9 7153261 7153307 -110709320 + (TA)n Simple_repeat Simple_repeat 1 46 0 222 37 0 0 chr9 7153334 7153361 -110709266 + (TG)n Simple_repeat Simple_repeat 2 28 0 226 306 68 41 chr9 7154257 7154404 -110708223 - MIR3 SINE MIR -46 162 12 23 0 0 0 chr9 7154800 7154823 -110707804 + AT_rich Low_complexity Low_complexity 1 23 0 5483 140 45 19 chr9 7155739 7156658 -110705969 - L1MA5A LINE L1 0 6297 5403 1874 169 0 6 chr9 7156658 7156972 -110705655 - AluJb SINE Alu 0 312 1 5483 140 45 19 chr9 7156972 7157889 -110704738 - L1MA5A LINE L1 -894 5403 4408 253 224 198 35 chr9 7158417 7158533 -110704094 + L2 LINE L2 3179 3313 0 259 370 8 0 chr9 7160325 7160444 -110702183 - L1MC/D LINE L1 -2153 6450 6331 241 241 36 36 chr9 7160751 7160863 -110701764 - L1MC/D LINE L1 -1070 5871 5760 512 278 159 48 chr9 7160944 7161145 -110701482 - L1MC/D LINE L1 -5082 1849 1672 2205 155 63 17 chr9 7161145 7161559 -110701068 - Tigger2a DNA MER2_type 0 434 2 512 278 159 48 chr9 7161559 7161709 -110700918 - L1MC/D LINE L1 -5259 1672 1459 544 223 107 22 chr9 7161709 7161933 -110700694 - L1MEd LINE L1 -4313 1997 1755 342 169 0 0 chr9 7161954 7162019 -110700608 + CT-rich Low_complexity Low_complexity 4 68 0 423 92 0 0 chr9 7162028 7162093 -110700534 + (TG)n Simple_repeat Simple_repeat 2 66 0 937 305 45 34 chr9 7162093 7162744 -110699883 - L1MEd LINE L1 -4555 1755 1056 2011 136 33 9 chr9 7162752 7163084 -110699543 - MER2 DNA MER2_type -5 340 1 449 291 58 16 chr9 7163173 7163431 -110699196 - L1MC/D LINE L1 -5041 1382 1114 404 265 68 0 chr9 7163810 7163927 -110698700 - MIR SINE MIR -98 164 40 530 280 108 11 chr9 7164523 7164709 -110697918 + MER58A DNA MER1_type 21 224 0 290 370 62 0 chr9 7164710 7164872 -110697755 + MIR SINE MIR 80 251 -11 196 320 144 49 chr9 7165609 7165893 -110696734 - L2 LINE L2 -2 3311 3001 639 303 213 15 chr9 7166088 7166695 -110695932 - L2 LINE L2 -684 2630 1904 338 300 86 7 chr9 7169277 7169417 -110693210 + Charlie8 DNA MER1_type 7 157 -2260 232 340 186 16 chr9 7169836 7170083 -110692544 + L3b LINE CR1 1284 1572 -11 470 183 8 11 chr9 7173522 7173670 -110688957 - MER20 DNA MER1_type -9 210 3 215 191 0 0 chr9 7174013 7174055 -110688572 + L2 LINE L2 3271 3312 -1 438 36 0 0 chr9 7174521 7174577 -110688050 + (GA)n Simple_repeat Simple_repeat 2 57 0 200 200 0 0 chr9 7175974 7176009 -110686618 + CT-rich Low_complexity Low_complexity 2 36 0 1613 114 0 4 chr9 7176639 7176867 -110685760 + AluSc SINE Alu 76 302 -7 258 229 383 11 chr9 7179100 7179275 -110683352 + MIR SINE MIR 21 260 -2 411 298 39 29 chr9 7180011 7180216 -110682411 + MER63A DNA MER1_type 4 210 0 1984 230 93 5 chr9 7180216 7180807 -110681820 + Charlie1 DNA MER1_type 1466 2108 -653 700 163 0 0 chr9 7180812 7180935 -110681692 - AluJo SINE Alu -7 305 183 * 724 181 7 21 chr9 7180926 7181070 -110681557 - AluJo SINE Alu -170 142 1 2418 164 93 21 chr9 7181078 7181683 -110680944 + Charlie1 DNA MER1_type 2114 2761 0 2234 92 0 0 chr9 7182114 7182447 -110680180 - AluSc SINE Alu 0 333 1 246 274 56 68 chr9 7182687 7182939 -110679688 - HAL1 LINE L1 -156 2351 2103 312 250 24 0 chr9 7182941 7183025 -110679602 - HAL1 LINE L1 -540 1967 1882 361 278 112 0 chr9 7183050 7183219 -110679408 - HAL1 LINE L1 -1602 905 718 1174 293 75 28 chr9 7183225 7183646 -110678981 - HAL1 LINE L1 -1828 679 279 2224 93 0 3 chr9 7183646 7183935 -110678692 - AluY SINE Alu -23 288 1 1174 293 75 28 chr9 7183935 7184041 -110678586 - HAL1 LINE L1 -2228 279 179 1719 194 13 7 chr9 7184041 7184351 -110678276 - AluJb SINE Alu 0 312 1 1174 293 75 28 chr9 7184351 7184464 -110678163 - HAL1 LINE L1 -2328 179 8 27 0 0 0 chr9 7184902 7184929 -110677698 + AT_rich Low_complexity Low_complexity 1 27 0 230 167 0 21 chr9 7185183 7185231 -110677396 - L2 LINE L2 0 3313 3267 396 230 40 55 chr9 7185632 7185832 -110676795 + Charlie5 DNA MER1_type 1 197 -2415 751 180 64 21 chr9 7185836 7186069 -110676558 + Charlie5 DNA MER1_type 2352 2594 -18 21 0 0 0 chr9 7189294 7189315 -110673312 + AT_rich Low_complexity Low_complexity 1 21 0 2363 72 0 3 chr9 7189471 7189763 -110672864 - AluY SINE Alu -20 291 1 257 354 53 0 chr9 7190139 7190252 -110672375 + MIR SINE MIR 11 129 -133 2443 102 0 0 chr9 7190351 7190664 -110671963 - AluSq SINE Alu 0 313 1 236 331 55 8 chr9 7190720 7190847 -110671780 + MIR SINE MIR 130 262 0 635 167 0 0 chr9 7191083 7191179 -110671448 + FRAM SINE Alu 51 146 -30 195 42 0 0 chr9 7191181 7191205 -110671422 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 340 283 101 0 chr9 7191205 7191343 -110671284 - L1MD2 LINE L1 -13 6346 6195 333 300 77 15 chr9 7191439 7191766 -110670861 + L1ME1 LINE L1 1868 2214 -4182 3886 248 79 35 chr9 7191775 7193488 -110669139 + L1ME1 LINE L1 3445 5351 -884 302 95 0 0 chr9 7193488 7193530 -110669097 + 5S rRNA rRNA 1 42 -79 3886 248 79 35 chr9 7193530 7194424 -110668203 + L1ME1 LINE L1 5351 6204 -31 488 156 0 0 chr9 7194480 7194570 -110668057 - L1MA6 LINE L1 0 6300 6211 189 238 111 0 chr9 7194967 7195030 -110667597 + MIR SINE MIR 178 247 -15 196 268 61 24 chr9 7195069 7195151 -110667476 - MIR3 SINE MIR -118 90 6 2018 149 0 10 chr9 7195831 7196133 -110666494 - AluSx SINE Alu -12 300 2 1434 177 53 61 chr9 7196974 7197398 -110665229 + MSTB1 LTR MaLR 3 416 -16 477 114 0 0 chr9 7197477 7197547 -110665080 - AluSp/q SINE Alu -10 303 234 214 373 36 0 chr9 7197945 7198055 -110664572 - MIR SINE MIR -146 116 3 195 129 0 0 chr9 7198121 7198152 -110664475 + (CAA)n Simple_repeat Simple_repeat 3 33 0 359 291 68 0 chr9 7199148 7199265 -110663362 - MIR SINE MIR -76 186 62 22 0 0 0 chr9 7199756 7199778 -110662849 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 7199845 7199866 -110662761 + AT_rich Low_complexity Low_complexity 1 21 0 567 209 0 9 chr9 7200481 7200596 -110662031 - MER68 LTR ERV1 -6 556 443 1510 140 34 23 chr9 7200609 7200874 -110661753 - MER68 LTR ERV1 -285 277 10 2043 142 7 0 chr9 7200986 7201289 -110661338 - AluSx SINE Alu -7 305 1 531 294 62 5 chr9 7201415 7201626 -110661001 + Charlie2 DNA MER1_type 12 234 -2628 601 266 131 26 chr9 7201767 7202132 -110660495 + MLT1J1 LTR MaLR 16 422 -28 760 151 45 50 chr9 7202183 7202382 -110660245 + Charlie2a DNA MER1_type 1466 1663 -1199 1028 199 50 9 chr9 7204823 7205044 -110657583 - MER46A DNA MER2_type -1 235 6 1686 175 42 9 chr9 7205047 7205378 -110657249 - MER7A DNA MER2_type -6 340 1 333 0 0 0 chr9 7205379 7205416 -110657211 + (TG)n Simple_repeat Simple_repeat 2 38 0 477 260 106 31 chr9 7205851 7206078 -110656549 + MLT1I LTR MaLR 141 384 -25 445 287 154 0 chr9 7206281 7206424 -110656203 + MIR SINE MIR 70 234 -28 512 344 75 40 chr9 7206445 7206843 -110655784 - L2 LINE L2 -10 3262 2851 248 252 207 9 chr9 7206855 7206966 -110655661 + MIR3 SINE MIR 9 141 -67 26 0 0 0 chr9 7207328 7207354 -110655273 + AT_rich Low_complexity Low_complexity 1 26 0 24 32 0 0 chr9 7207509 7207540 -110655087 + AT_rich Low_complexity Low_complexity 1 31 0 2318 87 0 7 chr9 7207541 7207839 -110654788 + AluSx SINE Alu 1 296 -16 254 225 84 0 chr9 7208464 7208535 -110654092 + Charlie2 DNA MER1_type 93 169 -2693 2150 215 116 26 chr9 7208684 7209580 -110653047 + Charlie2 DNA MER1_type 1847 2823 -39 373 243 83 95 chr9 7209621 7209790 -110652837 + MER5A DNA MER1_type 1 167 -22 183 80 0 0 chr9 7210507 7210532 -110652095 + (A)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr9 7213239 7213260 -110649367 + AT_rich Low_complexity Low_complexity 1 21 0 215 238 284 4 chr9 7213860 7213988 -110648639 - MIR SINE MIR -51 211 41 27 0 0 0 chr9 7215030 7215057 -110647570 + AT_rich Low_complexity Low_complexity 1 27 0 604 190 127 16 chr9 7215259 7215482 -110647145 - Charlie4 DNA MER1_type -20 1941 225 307 319 67 22 chr9 7215654 7215789 -110646838 - MIR SINE MIR -15 247 107 353 0 0 0 chr9 7216017 7216061 -110646566 - L1PA3 LINE L1 -3 6152 6109 487 228 62 28 chr9 7221287 7221432 -110641195 + MER5A DNA MER1_type 4 153 -36 201 206 27 27 chr9 7221541 7221614 -110641013 + T-rich Low_complexity Low_complexity 6 78 0 713 178 39 31 chr9 7221787 7221916 -110640711 + AluJo SINE Alu 6 135 -177 2212 124 0 0 chr9 7222082 7222381 -110640246 - AluSx SINE Alu -13 299 1 267 152 0 0 chr9 7222487 7222533 -110640094 + T-rich Low_complexity Low_complexity 3 48 0 216 0 0 0 chr9 7224051 7224075 -110638552 + (T)n Simple_repeat Simple_repeat 1 24 0 405 311 76 58 chr9 7225626 7225851 -110636776 + L2 LINE L2 3044 3272 0 313 346 53 0 chr9 7225905 7226038 -110636589 - MER91C DNA MER1_type 0 140 1 440 291 93 13 chr9 7226987 7227138 -110635489 + MIR SINE MIR 14 176 -86 218 167 0 0 chr9 7227184 7227220 -110635407 + (CTG)n Simple_repeat Simple_repeat 3 38 0 264 330 10 10 chr9 7227247 7227344 -110635283 - MIR SINE MIR -108 154 58 31 26 0 0 chr9 7228389 7228427 -110634200 + AT_rich Low_complexity Low_complexity 1 38 0 687 196 0 0 chr9 7228429 7228536 -110634091 - FLAM_C SINE Alu -36 107 1 225 0 0 0 chr9 7229589 7229614 -110633013 + (TTG)n Simple_repeat Simple_repeat 3 27 0 2013 154 0 0 chr9 7229973 7230278 -110632349 - AluJb SINE Alu -7 305 1 22 0 0 0 chr9 7231004 7231026 -110631601 + AT_rich Low_complexity Low_complexity 1 22 0 1462 133 246 13 chr9 7231552 7231853 -110630774 + THE1C LTR MaLR 5 375 0 290 270 69 22 chr9 7231865 7232027 -110630600 - L1MC5 LINE L1 -975 6833 6671 23 0 0 0 chr9 7232148 7232171 -110630456 + AT_rich Low_complexity Low_complexity 1 23 0 777 202 32 87 chr9 7232885 7232978 -110629649 - MIR SINE MIR -10 252 155 1122 184 108 0 chr9 7232978 7233190 -110629437 + MER46A DNA MER2_type 2 236 0 777 202 32 87 chr9 7233190 7233349 -110629278 - MIR SINE MIR -107 155 14 237 308 88 22 chr9 7233333 7233424 -110629203 - L2 LINE L2 -343 2970 2874 * 321 211 26 0 chr9 7235777 7235853 -110626774 - MER116 DNA Mariner -2 78 1 1512 161 93 21 chr9 7236565 7236856 -110625771 + AluJo SINE Alu 1 312 0 281 316 102 21 chr9 7238694 7238881 -110623746 - MIR SINE MIR 0 262 61 410 208 0 10 chr9 7239267 7239368 -110623259 - L1M4 LINE L1 -1424 4722 4623 378 0 0 0 chr9 7239368 7239410 -110623217 + (CA)n Simple_repeat Simple_repeat 2 43 0 619 220 125 102 chr9 7241091 7241514 -110621113 + Charlie4a DNA MER1_type 56 488 -20 290 343 96 36 chr9 7241602 7241768 -110620859 + L2 LINE L2 3076 3251 -21 305 186 119 51 chr9 7242728 7242846 -110619781 - L1ME4a LINE L1 -46 6075 5950 1801 219 88 24 chr9 7242851 7243349 -110619278 - MLT1H LTR MaLR -19 530 1 2493 119 111 3 chr9 7243769 7243981 -110618646 - MSTA LTR MaLR 0 428 240 243 0 0 0 chr9 7243981 7244008 -110618619 + (CA)n Simple_repeat Simple_repeat 1 27 0 180 0 0 0 chr9 7244007 7244027 -110618600 + (TC)n Simple_repeat Simple_repeat 2 21 0 * 2493 119 111 3 chr9 7244008 7244200 -110618427 - MSTA LTR MaLR -188 240 1 194 271 45 98 chr9 7244219 7244352 -110618275 + MIR SINE MIR 64 189 -73 186 300 118 64 chr9 7245280 7245390 -110617237 - L2 LINE L2 0 3272 3157 325 200 100 20 chr9 7245815 7245915 -110616712 - MIR SINE MIR -82 180 73 217 285 55 64 chr9 7246771 7247025 -110615602 + L2 LINE L2 2726 2960 -312 208 179 0 0 chr9 7247789 7247828 -110614799 - MIR SINE MIR -6 256 218 289 181 0 84 chr9 7247858 7247941 -110614686 - L1M4 LINE L1 -5870 672 597 2500 267 100 38 chr9 7248172 7248754 -110613873 + L1MC4 LINE L1 6459 7003 -1039 387 119 0 0 chr9 7248754 7248821 -110613806 + (TGGA)n Simple_repeat Simple_repeat 4 70 0 2500 267 100 38 chr9 7248821 7249487 -110613140 + L1MC4 LINE L1 7003 7785 -257 228 286 88 0 chr9 7249484 7249575 -110613052 - L1MC4 LINE L1 -1339 6703 6605 * 314 136 0 169 chr9 7249581 7249694 -110612933 + L1MC4 LINE L1 7900 8040 -2 204 304 0 0 chr9 7249749 7249805 -110612822 + T-rich Low_complexity Low_complexity 2 57 0 536 140 131 19 chr9 7250183 7250290 -110612337 - MSTC LTR MaLR -309 119 1 234 91 0 0 chr9 7250512 7250545 -110612082 + (TG)n Simple_repeat Simple_repeat 2 34 0 270 324 39 39 chr9 7251275 7251377 -110611250 - L2 LINE L2 -1 3271 3170 761 277 37 16 chr9 7251492 7251734 -110610893 - MIR SINE MIR 0 262 16 1812 144 0 33 chr9 7252496 7252802 -110609825 - AluJo SINE Alu -8 304 9 603 119 83 0 chr9 7253125 7253234 -110609393 - MLT2B1 LTR ERVL 0 520 403 903 121 0 0 chr9 7253235 7253359 -110609268 - AluJb SINE Alu -188 124 1 190 297 0 62 chr9 7257343 7257407 -110605220 - L2 LINE L2 -34 3238 3179 372 175 62 0 chr9 7257837 7257917 -110604710 - L1M4 LINE L1 -852 5294 5210 2629 189 32 15 chr9 7257928 7258592 -110604035 - L1ME LINE L1 -369 5797 5123 23 0 0 0 chr9 7258727 7258750 -110603877 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr9 7259810 7259833 -110602794 + AT_rich Low_complexity Low_complexity 1 23 0 1849 163 0 16 chr9 7260274 7260580 -110602047 + AluJo SINE Alu 1 301 -11 1756 183 0 10 chr9 7260731 7261037 -110601590 + AluJb SINE Alu 1 303 -9 1667 147 0 11 chr9 7261543 7261808 -110600819 - MER50 LTR ERV1 -38 696 435 1319 129 26 35 chr9 7261805 7262037 -110600590 - MER50 LTR ERV1 -504 230 1 * 219 158 35 18 chr9 7262059 7262116 -110600511 + T-rich Low_complexity Low_complexity 1 58 0 374 379 8 16 chr9 7262422 7262546 -110600081 - L2 LINE L2 -21 3251 3129 753 298 109 33 chr9 7262727 7262921 -110599706 - L2 LINE L2 -457 2857 2679 1286 126 10 20 chr9 7262921 7263089 -110599538 + MER107 DNA MER1_type 1 168 -29 182 36 0 36 chr9 7263089 7263117 -110599510 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1286 126 10 20 chr9 7263117 7263147 -110599480 + MER107 DNA MER1_type 168 197 0 753 298 109 33 chr9 7263147 7263439 -110599188 - L2 LINE L2 -635 2679 2334 23 0 0 0 chr9 7263837 7263860 -110598767 + AT_rich Low_complexity Low_complexity 1 23 0 706 169 81 16 chr9 7264030 7264154 -110598473 - FLAM_C SINE Alu -10 133 2 189 0 0 0 chr9 7264595 7264616 -110598011 + (TG)n Simple_repeat Simple_repeat 2 22 0 686 152 0 139 chr9 7265848 7266013 -110596614 - FLAM_C SINE Alu 0 143 2 241 258 135 0 chr9 7266211 7266300 -110596327 + MIR3 SINE MIR 85 185 -23 675 310 82 71 chr9 7267257 7267792 -110594835 - L3 LINE CR1 -50 1527 987 878 174 192 11 chr9 7267805 7268081 -110594546 + L1ME4a LINE L1 5793 6118 -3 415 237 144 37 chr9 7269448 7269567 -110593060 + MIR SINE MIR 17 122 -140 5165 175 108 125 chr9 7269567 7271348 -110591279 - MER52A LTR ERV1 0 1755 4 415 237 144 37 chr9 7271348 7271433 -110591194 + MIR SINE MIR 122 238 -24 194 247 130 0 chr9 7272258 7272335 -110590292 + L2 LINE L2 3162 3248 -24 795 161 0 0 chr9 7272770 7272894 -110589733 + FLAM_C SINE Alu 1 124 -9 1407 150 80 36 chr9 7273151 7273425 -110589202 + AluJo SINE Alu 1 286 -26 699 269 50 17 chr9 7273887 7274184 -110588443 + L1ME4a LINE L1 5599 5905 -216 1508 142 46 7 chr9 7274187 7274469 -110588158 + L1MB3 LINE L1 5891 6183 0 894 110 7 29 chr9 7274846 7274982 -110587645 - FLAM_C SINE Alu 0 133 1 232 333 39 16 chr9 7275137 7275266 -110587361 - MARNA DNA Mariner -178 408 277 456 244 59 7 chr9 7275429 7275564 -110587063 - LTR67 LTR ERVL -8 549 408 180 0 0 0 chr9 7275684 7275704 -110586923 + (CTG)n Simple_repeat Simple_repeat 1 20 0 37874 84 14 8 chr9 7277101 7283202 -110579425 - L1PA6 LINE L1 -2 6152 13 647 222 7 15 chr9 7284890 7285025 -110577602 - MER119 DNA MER1_type -1 582 449 396 272 76 0 chr9 7285043 7285135 -110577492 - MER119 DNA MER1_type -478 105 7 309 198 35 78 chr9 7286493 7286609 -110576018 + MIR SINE MIR 102 212 -50 240 86 0 0 chr9 7288182 7288217 -110574410 + (TG)n Simple_repeat Simple_repeat 2 36 0 26 30 0 0 chr9 7288397 7288430 -110574197 + AT_rich Low_complexity Low_complexity 1 33 0 25 51 0 0 chr9 7288885 7288924 -110573703 + AT_rich Low_complexity Low_complexity 1 39 0 501 235 9 17 chr9 7288984 7289099 -110573528 - MER81 DNA DNA 0 114 1 2217 111 0 19 chr9 7289641 7289957 -110572670 + AluSq SINE Alu 1 310 -3 1458 161 96 38 chr9 7290524 7290815 -110571812 + AluJb SINE Alu 1 308 -4 2280 103 7 0 chr9 7291073 7291374 -110571253 - AluSc SINE Alu -6 303 1 1385 114 31 22 chr9 7292561 7292789 -110569838 + MER30 DNA MER1_type 1 230 0 24 0 0 0 chr9 7293570 7293594 -110569033 + AT_rich Low_complexity Low_complexity 1 24 0 200 344 33 0 chr9 7294756 7294846 -110567781 - L2 LINE L2 -6 3266 3174 234 280 122 0 chr9 7297682 7297789 -110564838 - MIR3 SINE MIR -19 189 70 227 176 221 15 chr9 7297844 7297912 -110564715 - MLT1G1 LTR MaLR -36 559 478 279 306 68 27 chr9 7299697 7299844 -110562783 - MIR SINE MIR -13 249 97 1088 167 63 9 chr9 7300014 7300236 -110562391 + L1ME1 LINE L1 5928 6161 -5 249 324 69 6 chr9 7300349 7300522 -110562105 - L2 LINE L2 -1153 2161 1978 1051 284 39 56 chr9 7300663 7301075 -110561552 - L1MDa LINE L1 -6079 461 57 2214 117 10 0 chr9 7301102 7301411 -110561216 - AluSx SINE Alu 0 312 1 2083 184 86 4 chr9 7301812 7302278 -110560349 + MLT1D LTR MaLR 2 505 0 503 196 41 0 chr9 7302467 7302578 -110560049 - L1MB7 LINE L1 0 6174 6055 1533 181 83 0 chr9 7302633 7302909 -110559718 - AluJb SINE Alu -13 299 1 521 180 54 31 chr9 7303550 7303788 -110558839 + MER46C DNA MER2_type 61 338 0 2347 187 20 47 chr9 7303950 7304092 -110558535 + MLT2B2 LTR ERVL 1 145 -370 2728 98 8 0 chr9 7304092 7304451 -110558176 + THE1B LTR MaLR 3 364 0 2347 187 20 47 chr9 7304451 7304801 -110557826 + MLT2B2 LTR ERVL 145 480 -35 248 224 0 0 chr9 7304832 7304890 -110557737 + MLT2B2 LTR ERVL 458 515 0 6422 64 0 3 chr9 7304909 7305691 -110556936 + LTR17 LTR ERV1 1 780 0 312 370 60 10 chr9 7306873 7307073 -110555554 + MIR SINE MIR 21 230 -32 216 0 0 0 chr9 7308737 7308761 -110553866 + (T)n Simple_repeat Simple_repeat 1 24 0 185 283 98 22 chr9 7308831 7308923 -110553704 + L2 LINE L2 3209 3307 -6 595 234 13 19 chr9 7308926 7309080 -110553547 + MIR SINE MIR 88 240 -22 187 220 20 0 chr9 7309111 7309161 -110553466 + L2 LINE L2 3263 3313 0 1606 159 58 18 chr9 7309214 7309491 -110553136 - AluJo SINE Alu -16 296 9 2377 105 48 20 chr9 7309682 7310035 -110552592 - THE1B LTR MaLR -1 363 1 202 292 6 123 chr9 7310907 7310970 -110551657 + MER5B DNA MER1_type 3 72 -106 2237 112 3 0 chr9 7310970 7311273 -110551354 + AluSq SINE Alu 1 304 -9 202 292 6 123 chr9 7311273 7311380 -110551247 + MER5B DNA MER1_type 72 153 -25 306 269 129 65 chr9 7311498 7311684 -110550943 + MIR SINE MIR 20 217 -45 321 292 29 22 chr9 7311929 7312066 -110550561 + HAL1 LINE L1 1 138 -2369 677 228 61 6 chr9 7312095 7312275 -110550352 + HAL1 LINE L1 1562 1751 -756 777 340 54 4 chr9 7312301 7312580 -110550047 + LTR33 LTR ERVL 48 340 -181 1295 239 49 72 chr9 7312600 7313170 -110549457 + HAL1 LINE L1 1836 2392 -115 27 29 0 0 chr9 7314471 7314505 -110548122 + AT_rich Low_complexity Low_complexity 1 34 0 2117 134 0 17 chr9 7314505 7314804 -110547823 - AluSx SINE Alu -16 296 3 268 319 141 16 chr9 7315212 7315397 -110547230 - MIR SINE MIR -8 254 47 681 98 0 0 chr9 7316510 7316622 -110546005 + (TCCA)n Simple_repeat Simple_repeat 3 114 0 1275 84 0 0 chr9 7316636 7316923 -110545704 + (TCCA)n Simple_repeat Simple_repeat 1 287 0 288 354 9 0 chr9 7316925 7317038 -110545589 - L2 LINE L2 -14 3299 3186 406 253 0 0 chr9 7318057 7318156 -110544471 + L1MC/D LINE L1 5706 5804 -2004 2217 282 131 25 chr9 7318260 7319704 -110542923 + L2 LINE L2 1481 3084 -229 382 281 44 0 chr9 7319742 7319856 -110542771 - MER91C DNA MER1_type -17 123 5 1065 52 40 12 chr9 7319897 7320070 -110542557 + (TTTC)n Simple_repeat Simple_repeat 2 179 0 2112 132 7 0 chr9 7320072 7320368 -110542259 - AluSx SINE Alu -14 298 1 323 290 145 0 chr9 7320372 7320503 -110542124 + L2 LINE L2 3164 3313 0 307 303 13 26 chr9 7320525 7320680 -110541947 + HAL1b LINE L1 1189 1341 -7 471 269 140 5 chr9 7320695 7320888 -110541739 + MIR SINE MIR 30 248 -14 213 120 60 0 chr9 7320908 7320958 -110541669 + (TTA)n Simple_repeat Simple_repeat 2 54 0 1793 173 3 3 chr9 7321770 7322054 -110540573 + AluJo SINE Alu 5 288 -24 849 282 50 31 chr9 7324295 7324618 -110538009 + HAL1 LINE L1 11 339 -2168 5085 128 11 7 chr9 7324997 7325742 -110536885 - L1MC1 LINE L1 -1 6332 5585 2081 100 0 4 chr9 7325930 7326201 -110536426 + AluSq SINE Alu 5 274 -39 911 228 46 32 chr9 7326263 7326482 -110536145 - MER58A DNA MER1_type -2 222 1 663 283 79 18 chr9 7326567 7326846 -110535781 - MLT1K LTR MaLR -2 586 291 732 154 30 124 chr9 7326990 7327191 -110535436 + MER5A DNA MER1_type 3 184 -5 266 268 82 10 chr9 7327209 7327306 -110535321 + L2 LINE L2 3121 3224 -48 1597 164 98 14 chr9 7328045 7328331 -110534296 - AluSx SINE Alu -2 310 1 1069 199 92 5 chr9 7328741 7328947 -110533680 + MER58A DNA MER1_type 1 224 0 667 152 0 9 chr9 7329065 7329170 -110533457 - AluJ SINE Alu -19 293 190 895 150 0 0 chr9 7329177 7329310 -110533317 - AluJ SINE Alu -179 133 1 448 199 87 132 chr9 7329317 7329762 -110532865 - L1MC4 LINE L1 -1 8041 7549 271 270 22 31 chr9 7332297 7332435 -110530192 - MLT1J LTR MaLR -339 172 110 267 200 125 12 chr9 7332430 7332510 -110530117 - MLT1L LTR MaLR -524 91 3 * 270 201 97 119 chr9 7333279 7333413 -110529214 - MER5A DNA MER1_type -30 159 29 234 278 40 71 chr9 7333455 7333581 -110529046 - MIR SINE MIR -19 243 122 248 75 0 25 chr9 7333989 7334029 -110528598 + (GA)n Simple_repeat Simple_repeat 2 40 0 601 270 56 19 chr9 7334390 7334603 -110528024 - MIR SINE MIR -26 236 17 1554 147 13 63 chr9 7335641 7335941 -110526686 - AluJo SINE Alu -23 289 5 652 262 143 91 chr9 7336449 7336975 -110525652 + LTR67 LTR ERVL 2 554 -3 680 196 0 0 chr9 7337024 7337126 -110525501 + FLAM_C SINE Alu 17 118 -25 270 0 0 0 chr9 7337130 7337160 -110525467 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2202 116 10 0 chr9 7337487 7337780 -110524847 - AluSx SINE Alu -16 296 1 34329 94 55 10 chr9 7338006 7343879 -110518748 + L1PA6 LINE L1 11 6153 -1 230 360 11 73 chr9 7343902 7344163 -110518464 + L2 LINE L2 2942 3186 -86 474 236 90 36 chr9 7344588 7344784 -110517843 + MIR3 SINE MIR 18 216 -46 250 291 13 0 chr9 7344968 7345047 -110517580 + MLT1L LTR MaLR 1 80 -535 240 111 0 0 chr9 7345286 7345322 -110517305 + (TCCC)n Simple_repeat Simple_repeat 1 36 0 219 369 12 31 chr9 7345322 7345482 -110517145 + L2 LINE L2 2948 3104 -168 413 145 13 0 chr9 7345484 7345560 -110517067 + CT-rich Low_complexity Low_complexity 4 80 0 234 311 0 0 chr9 7346264 7346325 -110516302 - L2 LINE L2 -9 3263 3203 26 0 0 0 chr9 7346332 7346358 -110516269 + AT_rich Low_complexity Low_complexity 1 26 0 856 296 88 21 chr9 7346395 7346868 -110515759 + MLT2F LTR ERVL 1 434 -229 491 237 22 22 chr9 7346886 7347025 -110515602 + MLT2E LTR ERVL 475 613 -15 255 363 4 35 chr9 7347057 7347149 -110515478 + MLT1-int LTR MaLR 292 385 -986 2657 118 6 6 chr9 7347149 7347513 -110515114 - THE1B LTR MaLR 0 364 1 255 363 4 35 chr9 7347513 7347679 -110514948 + MLT1-int LTR MaLR 385 542 -829 24 0 0 0 chr9 7348081 7348105 -110514522 + AT_rich Low_complexity Low_complexity 1 24 0 760 333 68 12 chr9 7348338 7348677 -110513950 + LTR16C LTR ERVL 133 490 -1 205 340 21 0 chr9 7348786 7348880 -110513747 - L2 LINE L2 -305 2967 2872 * 259 333 29 0 chr9 7348871 7348940 -110513687 - MER91A DNA MER1_type -7 189 119 404 310 26 0 chr9 7348986 7349102 -110513525 - MER91A DNA MER1_type -40 156 38 273 263 38 0 chr9 7349504 7349584 -110513043 + MLT1J2 LTR MaLR 67 149 -301 227 196 0 20 chr9 7350256 7350307 -110512320 + (CA)n Simple_repeat Simple_repeat 2 51 0 378 85 0 0 chr9 7350911 7350970 -110511657 + (TG)n Simple_repeat Simple_repeat 1 59 0 265 268 31 70 chr9 7351084 7351292 -110511335 - MIR SINE MIR 0 262 8 755 224 56 28 chr9 7351842 7352021 -110510606 - MIR SINE MIR -66 196 13 1639 177 24 3 chr9 7352100 7352394 -110510233 + AluJb SINE Alu 1 300 -12 204 40 0 0 chr9 7352397 7352422 -110510205 + (CAA)n Simple_repeat Simple_repeat 3 27 0 295 299 120 33 chr9 7353025 7353209 -110509418 - MIR SINE MIR -6 256 57 636 167 0 0 chr9 7353510 7353600 -110509027 - AluJ/FLAM SINE Alu -221 91 2 4640 169 63 3 chr9 7353967 7354854 -110507773 + L1MD1 LINE L1 5292 6231 -11 274 231 0 0 chr9 7354856 7354921 -110507706 + MARNA DNA Mariner 327 391 -195 316 226 0 0 chr9 7355135 7355197 -110507430 - MER21B LTR ERV1 -144 719 658 * 3016 99 39 27 chr9 7355191 7355677 -110506950 - LTR21A LTR ERV1 -13 492 1 1393 188 82 36 chr9 7355679 7355983 -110506644 - MER21B LTR ERV1 -202 661 344 434 194 155 0 chr9 7356045 7356148 -110506479 - MER21B LTR ERV1 -647 216 98 376 127 228 0 chr9 7356173 7356252 -110506375 - FRAM SINE Alu -2 164 68 563 176 0 0 chr9 7356276 7356361 -110506266 - FRAM/FAM SINE Alu -92 84 1 397 210 25 0 chr9 7356380 7356461 -110506166 - MER21B LTR ERV1 -760 103 21 366 309 9 9 chr9 7356624 7356734 -110505893 - MIR SINE MIR -60 148 39 757 271 65 0 chr9 7357473 7357687 -110504940 - MIR SINE MIR -13 249 22 1984 123 3 49 chr9 7357688 7358013 -110504614 - AluJb SINE Alu -2 310 1 265 242 61 53 chr9 7359200 7359332 -110503295 - L2 LINE L2 -23 3290 3158 2446 178 48 85 chr9 7359400 7359939 -110502688 + LTR40a LTR ERVL 1 519 0 306 280 67 16 chr9 7361114 7361307 -110501320 + L1MEd LINE L1 638 840 -5279 1006 196 6 0 chr9 7361365 7361538 -110501089 + L1MDa LINE L1 19 192 -6348 * 2872 181 120 107 chr9 7361536 7361836 -110500791 + L1MDa LINE L1 807 1102 -5438 1725 189 3 7 chr9 7361836 7362137 -110500490 + AluJo SINE Alu 1 300 -12 2872 181 120 107 chr9 7362137 7362852 -110499775 + L1MDa LINE L1 1102 1835 -4705 1077 154 66 0 chr9 7363287 7363469 -110499158 - AluSc SINE Alu -2 307 114 2789 129 35 2 chr9 7363632 7364057 -110498570 + Tigger2 DNA MER2_type 2280 2718 0 207 195 0 24 chr9 7364338 7364364 -110498263 + CT-rich Low_complexity Low_complexity 2 28 -13 2201 108 3 10 chr9 7364364 7364678 -110497949 - AluSx SINE Alu 0 312 1 207 195 0 24 chr9 7364678 7364692 -110497935 + CT-rich Low_complexity Low_complexity 28 41 0 276 261 165 17 chr9 7365003 7365118 -110497509 + MIR3 SINE MIR 13 144 -64 379 299 25 80 chr9 7365175 7365376 -110497251 - MLT1J LTR MaLR -104 407 218 246 65 0 0 chr9 7365405 7365436 -110497191 - MLT1J2 LTR MaLR -356 94 64 257 235 20 0 chr9 7366915 7366966 -110495661 - MLT1K LTR MaLR 0 588 537 2038 141 76 17 chr9 7367746 7368100 -110494527 - THE1C LTR MaLR 0 375 1 242 314 157 0 chr9 7368378 7368499 -110494128 + MIR SINE MIR 11 150 -112 345 229 41 74 chr9 7368776 7368810 -110493817 + MIR SINE MIR 141 175 -87 536 313 44 0 chr9 7368810 7368992 -110493635 + MER91B DNA MER1_type 1 190 0 345 229 41 74 chr9 7368992 7369079 -110493548 + MIR SINE MIR 175 258 -4 256 300 43 21 chr9 7369239 7369379 -110493248 - L1MC4 LINE L1 -15 8027 7885 3362 210 26 41 chr9 7369519 7369573 -110493054 - L1ME2 LINE L1 -10 6088 6035 2286 105 0 0 chr9 7369573 7369868 -110492759 + AluSx SINE Alu 1 295 -17 3362 210 26 41 chr9 7369868 7369937 -110492690 - L1ME2 LINE L1 -63 6035 5966 2232 112 3 3 chr9 7369937 7370249 -110492378 + AluSx SINE Alu 1 312 0 3362 210 26 41 chr9 7370249 7370972 -110491655 - L1ME2 LINE L1 -132 5966 5254 1019 222 48 4 chr9 7370969 7371221 -110491406 - L1MD3 LINE L1 -2 7993 7731 * 1755 145 91 0 chr9 7371230 7371506 -110491121 - AluSx SINE Alu -11 301 1 4419 243 91 52 chr9 7371542 7373520 -110489107 - L1ME2 LINE L1 -830 5250 3207 5894 138 11 18 chr9 7373536 7374435 -110488192 - L1MC1 LINE L1 0 6333 5438 1875 54 0 5 chr9 7374435 7374683 -110487944 - AluY SINE Alu 0 319 73 5894 138 11 18 chr9 7374683 7374737 -110487890 - L1MC1 LINE L1 -895 5438 5385 7050 52 0 72 chr9 7374737 7375919 -110486708 - L1PA5 LINE L1 0 6154 5081 9320 223 42 11 chr9 7375927 7376960 -110485667 - L1MC1 LINE L1 -752 5394 4394 2070 121 0 13 chr9 7376960 7377258 -110485369 - AluSc SINE Alu -15 294 1 9320 223 42 11 chr9 7377258 7378615 -110484012 - L1MC1 LINE L1 -1752 4394 2930 277 229 57 0 chr9 7378664 7378769 -110483858 - L1ME2 LINE L1 -2989 3091 2981 1053 277 88 71 chr9 7378770 7379224 -110483403 + MLT1G LTR MaLR 1 460 -135 408 208 25 67 chr9 7379289 7379409 -110483218 - L1ME2 LINE L1 -5859 211 97 2178 111 0 3 chr9 7379869 7380157 -110482470 - AluSx SINE Alu -15 297 11 288 0 0 0 chr9 7380708 7380740 -110481887 + (TG)n Simple_repeat Simple_repeat 2 33 0 361 277 43 116 chr9 7381293 7381622 -110481005 - L2 LINE L2 -2 3270 2966 1090 181 48 9 chr9 7383074 7383284 -110479343 - L1PB3 LINE L1 -1 6153 5936 402 261 96 102 chr9 7383477 7383811 -110478816 + MLT1K LTR MaLR 10 341 -247 241 219 37 0 chr9 7383924 7384006 -110478621 + C-rich Low_complexity Low_complexity 3 87 0 649 341 60 30 chr9 7384011 7384664 -110477963 - L2 LINE L2 -5 3308 2628 370 278 35 0 chr9 7384764 7384879 -110477748 - MLT1L LTR MaLR -129 486 368 234 211 53 0 chr9 7385737 7385794 -110476833 + MLT1K LTR MaLR 522 581 -7 1801 191 63 26 chr9 7386631 7387013 -110475614 + MSTD LTR MaLR 1 396 0 180 111 0 0 chr9 7387156 7387183 -110475444 + (TCCC)n Simple_repeat Simple_repeat 4 30 0 1754 183 26 7 chr9 7387585 7387891 -110474736 + AluJb SINE Alu 1 312 0 300 275 42 25 chr9 7387925 7388045 -110474582 + MIR SINE MIR 60 181 -81 217 296 26 61 chr9 7388117 7388232 -110474395 - L3 LINE CR1 -206 1371 1261 1354 177 9 79 chr9 7388238 7388554 -110474073 - L1MB5 LINE L1 0 6174 5881 271 208 218 20 chr9 7389816 7389917 -110472710 - MLT1J LTR MaLR -57 454 334 809 247 147 36 chr9 7389998 7390386 -110472241 - MLT1J LTR MaLR -74 437 7 218 255 59 0 chr9 7390961 7391012 -110471615 + MIR3 SINE MIR 103 156 -52 293 240 165 8 chr9 7393074 7393195 -110469432 + L2 LINE L2 2919 3058 -214 321 125 0 0 chr9 7393498 7393554 -110469073 + (GA)n Simple_repeat Simple_repeat 1 56 0 4671 110 36 7 chr9 7394624 7395342 -110467285 - L1PA16 LINE L1 -11 6155 5417 297 68 0 0 chr9 7395414 7395458 -110467169 + (TCTA)n Simple_repeat Simple_repeat 2 45 0 233 322 144 8 chr9 7396675 7396793 -110465834 + L2 LINE L2 3138 3271 -1 223 319 55 22 chr9 7397719 7397810 -110464817 - MIR SINE MIR -70 192 99 373 289 72 41 chr9 7398768 7398919 -110463708 - MLT1L LTR MaLR 0 615 470 2096 145 0 6 chr9 7398919 7399230 -110463397 - AluSx SINE Alu -3 309 1 373 289 72 41 chr9 7399230 7399470 -110463157 - MLT1L LTR MaLR -145 470 110 37 0 0 0 chr9 7399492 7399529 -110463098 + AT_rich Low_complexity Low_complexity 1 37 0 39594 83 6 7 chr9 7399529 7405685 -110456942 - L1PA6 LINE L1 0 6154 5 603 77 0 0 chr9 7406808 7406886 -110455741 - MADE1 DNA Mariner 0 80 3 734 235 15 67 chr9 7407789 7408057 -110454570 - L1MC4a LINE L1 -1878 5930 5677 204 125 0 0 chr9 7408070 7408102 -110454525 + (GA)n Simple_repeat Simple_repeat 1 32 0 207 293 61 0 chr9 7408144 7408226 -110454401 + L3b LINE CR1 1251 1337 -246 680 172 19 51 chr9 7410670 7410827 -110451800 - MIR SINE MIR -10 252 101 195 42 0 0 chr9 7411184 7411208 -110451419 + (GA)n Simple_repeat Simple_repeat 2 25 0 1056 295 157 5 chr9 7411711 7412152 -110450475 - MLT1L LTR MaLR -22 593 86 507 275 8 0 chr9 7412362 7412493 -110450134 + L1MC4a LINE L1 5775 5906 -1902 2502 59 0 31 chr9 7412630 7412951 -110449676 + AluY SINE Alu 1 311 0 383 285 145 5 chr9 7413173 7413366 -110449261 + L1MC4a LINE L1 6531 6750 -1058 255 317 0 12 chr9 7413467 7413549 -110449078 - MIR SINE MIR -179 83 3 428 204 41 20 chr9 7413726 7413824 -110448803 - MIR3 SINE MIR -15 193 94 387 316 8 0 chr9 7414796 7414929 -110447698 + MIR SINE MIR 58 191 -71 1724 99 4 21 chr9 7414983 7415216 -110447411 - AluSp SINE Alu -11 302 74 200 132 0 26 chr9 7416125 7416163 -110446464 - MIR SINE MIR -109 153 117 511 250 8 0 chr9 7417039 7417171 -110445456 + L1MB7 LINE L1 6040 6172 -12 2521 76 0 0 chr9 7417925 7418229 -110444398 + AluY SINE Alu 1 304 -7 670 167 67 40 chr9 7418646 7418796 -110443831 + MIR SINE MIR 109 262 0 703 263 123 4 chr9 7419617 7419845 -110442782 - MIR SINE MIR 0 262 8 185 323 56 71 chr9 7420107 7420305 -110442322 - MIR SINE MIR -44 218 24 405 0 0 0 chr9 7421295 7421340 -110441287 + (CA)n Simple_repeat Simple_repeat 2 46 0 390 213 155 32 chr9 7422793 7422948 -110439679 - MIR3 SINE MIR -26 182 9 479 227 123 19 chr9 7423391 7423545 -110439082 - MIR SINE MIR -91 171 2 540 217 217 11 chr9 7424734 7425047 -110437580 + MLT1J LTR MaLR 82 488 -23 185 139 0 28 chr9 7425438 7425474 -110437153 - MIR SINE MIR -153 55 21 720 215 70 0 chr9 7426283 7426441 -110436186 - MER45A DNA AcHobo -1 177 9 3185 154 11 71 chr9 7426515 7426652 -110435975 - MER6A DNA MER2_type -260 605 461 1805 143 68 4 chr9 7426652 7426932 -110435695 + AluJo SINE Alu 1 298 -14 3185 154 11 71 chr9 7426932 7427438 -110435189 - MER6A DNA MER2_type -404 461 1 476 160 0 0 chr9 7427442 7427517 -110435110 + MSTD LTR MaLR 1 75 -321 7236 221 82 19 chr9 7477517 7477785 -110384842 - L1M2 LINE L1 -4523 2686 2436 2083 124 3 0 chr9 7477785 7478096 -110384531 - AluSp SINE Alu 0 312 1 7236 221 82 19 chr9 7478096 7480296 -110382331 - L1M2 LINE L1 -4773 2436 1 199 283 67 0 chr9 7480453 7480513 -110382114 + L2 LINE L2 2191 2254 -1060 740 304 35 4 chr9 7480788 7481015 -110381612 + MIR SINE MIR 25 258 -4 304 286 8 40 chr9 7481451 7481577 -110381050 + GA-rich Low_complexity Low_complexity 3 124 0 377 247 62 84 chr9 7482322 7482500 -110380127 + HAL1 LINE L1 22 195 -2312 287 330 42 62 chr9 7482897 7483203 -110379424 + HAL1 LINE L1 706 1005 -1502 265 342 17 17 chr9 7484148 7484268 -110378359 + MIR SINE MIR 23 142 -120 2866 221 100 12 chr9 7486210 7486988 -110375639 - L1ME1 LINE L1 -3 6163 5317 241 235 15 15 chr9 7487751 7487819 -110374808 + MLT1K LTR MaLR 179 246 -342 2064 160 0 0 chr9 7488156 7488462 -110374165 + AluJo SINE Alu 1 306 -6 232 333 8 79 chr9 7488680 7488806 -110373821 - L3 LINE CR1 -3 1574 1458 389 355 33 16 chr9 7489852 7490094 -110372533 - MIR SINE MIR -14 248 3 404 258 116 37 chr9 7491212 7491402 -110371225 + MIR SINE MIR 56 260 -2 2111 221 61 17 chr9 7492296 7492770 -110369857 + MLT1F LTR MaLR 1 495 -47 2060 221 31 48 chr9 7492771 7493292 -110369335 - LTR40a LTR ERVL 0 519 8 262 235 0 0 chr9 7493298 7493349 -110369278 + MLT1F LTR MaLR 492 542 0 351 276 95 0 chr9 7494368 7494484 -110368143 + MIR SINE MIR 124 250 -12 555 163 0 0 chr9 7494489 7494581 -110368046 - AluJ/FRAM SINE Alu 0 312 221 1521 263 50 19 chr9 7495234 7495710 -110366917 + LTR16C LTR ERVL 1 491 0 345 329 96 0 chr9 7495856 7496002 -110366625 - MIR SINE MIR -66 196 37 1016 251 140 40 chr9 7496093 7496664 -110365963 + L2 LINE L2 2698 3308 -5 329 243 162 0 chr9 7497230 7497366 -110365261 - L1ME4a LINE L1 -3 6118 5961 1046 110 6 0 chr9 7497447 7497611 -110365016 + (TTTCC)n Simple_repeat Simple_repeat 2 166 0 1708 169 22 0 chr9 7497611 7497884 -110364743 - AluJb SINE Alu -33 279 1 272 275 11 0 chr9 7498026 7498117 -110364510 - HsTC2 DNA Tc2 -1007 891 800 482 134 0 0 chr9 7498153 7498220 -110364407 + Tigger2 DNA MER2_type 1 67 -2651 * 570 143 0 10 chr9 7498206 7498304 -110364323 + Tigger2 DNA MER2_type 2267 2363 -355 226 103 0 0 chr9 7498301 7498330 -110364297 + Tigger2 DNA MER2_type 2690 2718 0 * 648 260 87 5 chr9 7498334 7498542 -110364085 - HsTC2 DNA Tc2 -1138 760 536 336 276 33 59 chr9 7498544 7498696 -110363931 - HsTC2 DNA Tc2 -1750 148 1 21 0 0 0 chr9 7498845 7498866 -110363761 + AT_rich Low_complexity Low_complexity 1 21 0 510 271 25 30 chr9 7499613 7499748 -110362879 - L1ME4a LINE L1 -162 5959 5824 2153 132 47 44 chr9 7499748 7500111 -110362516 + THE1B LTR MaLR 1 364 0 510 271 25 30 chr9 7500111 7500174 -110362453 - L1ME4a LINE L1 -297 5824 5762 2451 68 0 0 chr9 7500663 7500957 -110361670 + AluY SINE Alu 1 294 -17 381 197 13 0 chr9 7501766 7501842 -110360785 + MER58 DNA MER1_type 2343 2419 -1 234 258 33 67 chr9 7502650 7502770 -110359857 - L1MC4 LINE L1 -116 7926 7811 295 271 21 21 chr9 7502899 7502995 -110359632 - L1MC4 LINE L1 -368 7674 7579 2531 230 17 35 chr9 7503013 7503648 -110358979 - L1ME1 LINE L1 -4 6162 5539 253 220 68 0 chr9 7503691 7503750 -110358877 - L1ME LINE L1 -6002 68 6 234 307 53 0 chr9 7503823 7503898 -110358729 - MIR3 SINE MIR -14 194 116 346 236 42 0 chr9 7503921 7503993 -110358634 - L2 LINE L2 -4 3268 3194 294 254 0 0 chr9 7505392 7505459 -110357168 + MIR3 SINE MIR 137 203 -5 27 49 0 0 chr9 7506148 7506189 -110356438 + AT_rich Low_complexity Low_complexity 1 41 0 632 255 21 32 chr9 7506378 7506566 -110356061 + MIR SINE MIR 2 187 -75 23 33 0 0 chr9 7508900 7508930 -110353697 + AT_rich Low_complexity Low_complexity 1 30 0 431 193 0 23 chr9 7509875 7509963 -110352664 + MIR SINE MIR 174 259 -3 21 57 0 0 chr9 7510135 7510170 -110352457 + AT_rich Low_complexity Low_complexity 1 35 0 182 306 26 119 chr9 7510448 7510641 -110351986 + MIR SINE MIR 18 192 -70 329 314 0 8 chr9 7511648 7511769 -110350858 - LTR67 LTR ERVL 0 557 438 2483 132 16 65 chr9 7511821 7512267 -110350360 + Tigger2a DNA MER2_type 11 434 0 299 243 40 0 chr9 7512319 7512393 -110350234 - LTR67 LTR ERVL -478 79 3 2625 227 116 136 chr9 7512857 7513693 -110348934 - HAL1 LINE L1 -93 2414 1563 764 160 82 82 chr9 7513693 7513716 -110348911 + MER58C DNA MER1_type 3 25 -2395 2669 167 22 31 chr9 7513716 7514206 -110348421 - MER66B LTR ERV1 0 486 1 764 160 82 82 chr9 7514206 7514273 -110348354 + MER58C DNA MER1_type 25 91 -2329 483 18 0 0 chr9 7514273 7514329 -110348298 + (CCAA)n Simple_repeat Simple_repeat 4 59 0 764 160 82 82 chr9 7514329 7514443 -110348184 + MER58C DNA MER1_type 90 208 -7 2625 227 116 136 chr9 7514443 7514895 -110347732 - HAL1 LINE L1 -944 1563 1103 189 0 0 0 chr9 7514895 7514916 -110347711 + (TA)n Simple_repeat Simple_repeat 1 21 0 2625 227 116 136 chr9 7514916 7515345 -110347282 - HAL1 LINE L1 -1404 1103 530 1210 182 9 18 chr9 7515359 7515579 -110347048 - AluJo SINE Alu -22 290 73 241 215 169 0 chr9 7515582 7515647 -110346980 - HAL1 LINE L1 -1966 541 466 1058 137 12 6 chr9 7515648 7515816 -110346811 - FRAM SINE Alu -7 169 1 908 243 62 110 chr9 7515816 7516298 -110346329 - HAL1 LINE L1 -2033 474 16 279 259 16 77 chr9 7516638 7516793 -110345834 - L1ME LINE L1 -516 5605 5465 1317 282 44 12 chr9 7517512 7517994 -110344633 - Tigger8 DNA MER2_type -13 653 157 1725 171 0 51 chr9 7518616 7518932 -110343695 + AluJb SINE Alu 1 300 -12 1124 151 27 28 chr9 7521845 7522063 -110340564 - L1PB1 LINE L1 -13 6153 5945 1433 122 10 0 chr9 7523081 7523286 -110339341 - L1PB1 LINE L1 0 6151 5945 258 308 65 19 chr9 7523306 7523413 -110339214 + MIR SINE MIR 61 172 -90 439 259 109 23 chr9 7523662 7523836 -110338791 - LTR67 LTR ERVL -13 544 356 305 325 19 57 chr9 7523987 7524144 -110338483 - LTR67 LTR ERVL -355 202 52 210 277 96 0 chr9 7524402 7524496 -110338131 - MIR SINE MIR -80 182 80 475 316 124 10 chr9 7524548 7524741 -110337886 + MIR SINE MIR 7 221 -41 232 200 12 129 chr9 7526311 7526365 -110336262 + MIR SINE MIR 105 147 -115 2262 77 7 0 chr9 7526365 7526651 -110335976 - AluSp SINE Alu -25 288 1 232 200 12 129 chr9 7526651 7526681 -110335946 + MIR SINE MIR 147 179 -83 2272 136 33 25 chr9 7526760 7527121 -110335506 + THE1B LTR MaLR 1 364 0 2522 62 0 7 chr9 7530247 7530556 -110332071 + AluY SINE Alu 1 307 -4 235 214 0 0 chr9 7531148 7531190 -110331437 + L2 LINE L2 3228 3269 -3 1073 90 8 0 chr9 7531798 7531932 -110330695 + AluSq/x SINE Alu 1 135 -178 1827 161 3 3 chr9 7531933 7532224 -110330403 + AluSx SINE Alu 1 291 -21 2683 162 54 35 chr9 7532376 7532951 -110329676 + L1MA7 LINE L1 5607 6192 -99 972 169 19 5 chr9 7533073 7533280 -110329347 + L1MA7 LINE L1 6080 6289 -2 233 342 149 0 chr9 7534131 7534245 -110328382 + MIR3 SINE MIR 15 145 -63 242 283 54 0 chr9 7534819 7534911 -110327716 + MIR SINE MIR 96 192 -70 214 216 27 0 chr9 7535290 7535364 -110327263 + GA-rich Low_complexity Low_complexity 2 77 0 250 239 30 0 chr9 7536650 7536717 -110325910 + (TA)n Simple_repeat Simple_repeat 2 70 0 2691 26 7 0 chr9 7536782 7537090 -110325537 + AluY SINE Alu 1 310 -1 1983 161 70 6 chr9 7538158 7538500 -110324127 + MLT1A1 LTR MaLR 1 364 -1 728 218 18 41 chr9 7538990 7539210 -110323417 + L1MA7 LINE L1 6076 6290 -1 506 296 69 57 chr9 7540585 7540832 -110321795 - MIR SINE MIR -12 250 1 189 205 0 0 chr9 7541572 7541611 -110321016 - MIR SINE MIR -66 196 158 2069 138 3 0 chr9 7542304 7542600 -110320027 + AluSx SINE Alu 3 299 -13 370 227 40 80 chr9 7543348 7543498 -110319129 - L2 LINE L2 -10 3303 3160 839 284 29 0 chr9 7543561 7543765 -110318862 - MER63A DNA MER1_type 0 210 1 25 0 0 0 chr9 7543904 7543929 -110318698 + AT_rich Low_complexity Low_complexity 1 25 0 375 312 55 0 chr9 7544229 7544338 -110318289 - MIR SINE MIR -120 142 28 2800 174 49 8 chr9 7544828 7545356 -110317271 + MER44D DNA MER2_type 1 605 0 317 276 43 17 chr9 7545731 7545847 -110316780 - LTR67 LTR ERVL -10 547 429 1037 186 11 6 chr9 7546885 7547062 -110315565 + MER5B DNA MER1_type 1 178 0 234 0 0 0 chr9 7547159 7547185 -110315442 + (TTA)n Simple_repeat Simple_repeat 2 27 0 471 296 123 0 chr9 7547240 7547419 -110315208 + MIR SINE MIR 49 249 -13 225 266 28 73 chr9 7547486 7547595 -110315032 - MIR SINE MIR -78 184 81 467 230 164 24 chr9 7547892 7548057 -110314570 - MIR3 SINE MIR 0 208 21 258 218 64 0 chr9 7548236 7548314 -110314313 - MLT1H1 LTR MaLR -1 554 507 612 292 82 26 chr9 7548352 7548585 -110314042 - MLT1H1 LTR MaLR -309 246 1 477 292 52 7 chr9 7549372 7549526 -110313101 + MIR SINE MIR 95 255 -7 210 171 0 0 chr9 7549528 7549569 -110313058 + (CAAT)n Simple_repeat Simple_repeat 2 42 0 410 261 113 20 chr9 7550286 7550481 -110312146 + MIR SINE MIR 2 214 -48 476 338 87 14 chr9 7550584 7550803 -110311824 - MIR SINE MIR -8 254 20 198 329 75 80 chr9 7551243 7551456 -110311171 - MIR SINE MIR 0 262 51 234 302 0 0 chr9 7551540 7551603 -110311024 + MER5A DNA MER1_type 51 113 -76 476 281 98 58 chr9 7553545 7553769 -110308858 + MIR SINE MIR 4 236 -26 519 328 6 17 chr9 7555868 7556048 -110306579 - MIR3 SINE MIR -11 197 20 827 214 291 40 chr9 7556596 7556832 -110305795 + Charlie2a DNA MER1_type 2 177 -2685 2024 118 27 3 chr9 7556832 7557128 -110305499 - AluSx SINE Alu -9 303 1 827 214 291 40 chr9 7557128 7557269 -110305358 + Charlie2a DNA MER1_type 177 474 -2388 978 206 25 25 chr9 7557270 7557547 -110305080 + Charlie2a DNA MER1_type 736 1012 -1850 238 224 0 26 chr9 7557602 7557678 -110304949 - L1MC5 LINE L1 -35 7926 7853 2262 98 3 0 chr9 7557699 7557986 -110304641 - AluSp SINE Alu -25 288 1 281 228 35 0 chr9 7558651 7558765 -110303862 + (TA)n Simple_repeat Simple_repeat 2 119 0 283 316 58 26 chr9 7558801 7558997 -110303630 + MIR SINE MIR 58 259 -3 555 254 89 46 chr9 7559395 7559821 -110302806 - MLT1L LTR MaLR -1 614 126 211 254 104 0 chr9 7561509 7561576 -110301051 - MIR SINE MIR -64 198 125 195 289 19 0 chr9 7561587 7561639 -110300988 + L2 LINE L2 3219 3271 -1 2098 171 31 6 chr9 7562169 7562525 -110300102 - MLT1A1 LTR MaLR 0 365 1 357 318 101 16 chr9 7564059 7564248 -110298379 - MIR SINE MIR -6 256 52 2029 136 172 5 chr9 7564407 7564774 -110297853 - MSTA LTR MaLR 0 428 1 1005 180 52 134 chr9 7564887 7565422 -110297205 + MER4A LTR ERV1 1 432 -165 632 209 19 87 chr9 7565407 7565613 -110297014 + MER4C LTR ERV1 273 464 -1 * 201 39 0 0 chr9 7565952 7565978 -110296649 + (TG)n Simple_repeat Simple_repeat 2 27 0 189 0 0 0 chr9 7566249 7566270 -110296357 + (CA)n Simple_repeat Simple_repeat 1 21 0 216 111 0 0 chr9 7567684 7567720 -110294907 + (CA)n Simple_repeat Simple_repeat 1 36 0 1323 261 68 38 chr9 7568083 7568554 -110294073 + LTR16C LTR ERVL 1 485 -6 203 316 52 44 chr9 7568766 7568823 -110293804 + L2 LINE L2 3171 3226 -87 2622 52 7 0 chr9 7568823 7569132 -110293495 - AluY SINE Alu 0 311 1 203 316 52 44 chr9 7569132 7569210 -110293417 + L2 LINE L2 3226 3307 -6 1629 169 96 37 chr9 7570097 7570451 -110292176 + THE1C LTR MaLR 1 375 0 1030 273 101 21 chr9 7571825 7572202 -110290425 - MLT1I LTR MaLR -2 407 1 2559 65 0 0 chr9 7572244 7572553 -110290074 + AluY SINE Alu 3 311 0 382 294 48 14 chr9 7572687 7572863 -110289764 + MIR SINE MIR 42 221 -41 261 244 142 47 chr9 7573460 7573587 -110289040 + Charlie8 DNA MER1_type 87 225 -2192 259 306 102 23 chr9 7573994 7574152 -110288475 - MIR SINE MIR -63 145 1 198 333 0 26 chr9 7574411 7574489 -110288138 + L2 LINE L2 3197 3272 0 359 297 40 14 chr9 7575325 7575601 -110287026 - L1MDb LINE L1 -5023 1921 1639 7806 144 17 6 chr9 7575626 7577833 -110284794 + L1PA14 LINE L1 3923 6149 -12 24 0 0 0 chr9 7577835 7577859 -110284768 + AT_rich Low_complexity Low_complexity 1 24 0 260 219 24 158 chr9 7577935 7578181 -110284446 - L1MDb LINE L1 -5082 1341 1129 658 314 47 38 chr9 7578511 7578963 -110283664 - L1MDb LINE L1 -5944 479 24 248 311 8 0 chr9 7578970 7579089 -110283538 - L1ME LINE L1 -313 5808 5689 373 175 6 108 chr9 7579160 7579317 -110283310 + L1ME3A LINE L1 6006 6148 -22 24 0 0 0 chr9 7579412 7579436 -110283191 + AT_rich Low_complexity Low_complexity 1 24 0 377 331 44 7 chr9 7580692 7580828 -110281799 - MIR3 SINE MIR -23 185 45 1316 192 55 73 chr9 7580892 7581273 -110281354 - MLT1A2 LTR MaLR 0 374 1 5364 129 40 2 chr9 7582058 7583590 -110279037 + L1PA15 LINE L1 4594 6159 -6 2534 74 0 0 chr9 7584030 7584341 -110278286 + AluY SINE Alu 1 311 0 4442 215 115 7 chr9 7584511 7585225 -110277402 - L1PA16 LINE L1 -9 6472 5837 2152 104 27 7 chr9 7585225 7585524 -110277103 - AluSx SINE Alu -7 305 1 4442 215 115 7 chr9 7585524 7586438 -110276189 - L1PA16 LINE L1 -644 5837 4616 * 10440 153 20 20 chr9 7586426 7587753 -110274874 - L1MA3 LINE L1 -2 7722 6397 2518 48 0 10 chr9 7587753 7588065 -110274562 - AluY SINE Alu 0 311 3 10440 153 20 20 chr9 7588065 7589930 -110272697 - L1MA3 LINE L1 -1327 6397 4527 696 129 0 0 chr9 7589946 7590062 -110272565 - L1PA16 LINE L1 -1829 4632 4517 * 4132 129 2 8 chr9 7590060 7590702 -110271925 - L1PA16 LINE L1 -4757 1118 481 1697 167 69 3 chr9 7590706 7591023 -110271604 - L1PA16 LINE L1 -5536 339 2 18627 160 32 24 chr9 7591023 7594645 -110267982 - L1MA3 LINE L1 -3898 3667 16 3039 195 47 1 chr9 7594651 7595329 -110267298 - L1 LINE L1 -1817 4329 3621 11350 191 31 19 chr9 7595329 7598502 -110264125 - L1PA15-16 LINE L1 -3368 3481 716 2163 161 97 11 chr9 7598516 7598970 -110263657 - LTR49 LTR ERV1 -102 493 1 2895 77 41 10 chr9 7599295 7599712 -110262915 - L1PA11 LINE L1 -2 6172 5743 324 261 109 0 chr9 7600262 7600354 -110262273 + MIR SINE MIR 156 257 -5 2773 193 56 59 chr9 7600851 7601580 -110261047 - LTR8A LTR ERV1 0 727 1 345 262 10 48 chr9 7603048 7603151 -110259476 + MIR SINE MIR 9 107 -155 1122 316 118 29 chr9 7603803 7604513 -110258114 + HERVL LTR ERVL 2937 3725 -1929 2809 7 0 0 chr9 7604513 7604817 -110257810 + AluYb8 SINE Alu 1 304 -14 1122 316 118 29 chr9 7604817 7604896 -110257731 + HERVL LTR ERVL 3725 3796 -1858 1233 331 43 50 chr9 7604978 7605971 -110256656 + HERVL LTR ERVL 4050 5035 -729 878 228 34 153 chr9 7606404 7606754 -110255873 + LTR16C LTR ERVL 71 350 -141 2545 117 6 80 chr9 7606754 7607243 -110255384 - MLT2A2 LTR ERVL 0 453 1 878 228 34 153 chr9 7607243 7607370 -110255257 + LTR16C LTR ERVL 350 491 0 621 240 34 43 chr9 7607529 7607737 -110254890 - MER58C DNA MER1_type 0 215 10 2562 46 3 0 chr9 7609387 7609694 -110252933 + AluY SINE Alu 1 308 -3 180 0 0 0 chr9 7609694 7609714 -110252913 + (TA)n Simple_repeat Simple_repeat 2 21 0 336 355 51 0 chr9 7609752 7609890 -110252737 + L2 LINE L2 2917 3061 -211 1245 216 42 45 chr9 7609890 7610312 -110252315 - MER66A LTR ERV1 0 525 165 389 295 85 123 chr9 7610532 7610874 -110251753 + MER102b DNA MER1_type 13 341 0 2240 110 0 0 chr9 7611058 7611348 -110251279 - AluSx SINE Alu -22 290 1 218 246 18 18 chr9 7611483 7611540 -110251087 + L2 LINE L2 3179 3235 -78 240 35 0 0 chr9 7611587 7611616 -110251011 + (TA)n Simple_repeat Simple_repeat 2 30 0 228 35 0 0 chr9 7611615 7611644 -110250983 + (TG)n Simple_repeat Simple_repeat 2 30 0 * 1166 148 0 48 chr9 7611650 7611879 -110250748 - L1PA16 LINE L1 -9 6157 5940 827 211 54 66 chr9 7612289 7612531 -110250096 + MER8 DNA MER2_type 1 239 0 331 370 126 38 chr9 7613009 7613406 -110249221 - L2 LINE L2 0 3272 2841 309 164 64 38 chr9 7613787 7613896 -110248731 + MER45C DNA AcHobo 82 195 -758 1274 281 76 14 chr9 7614014 7614513 -110248114 + MER45C DNA AcHobo 424 953 0 259 316 0 0 chr9 7614748 7614824 -110247803 + GA-rich Low_complexity Low_complexity 2 77 0 2710 128 7 2 chr9 7615887 7616315 -110246312 - L1PA16 LINE L1 -9 6157 5728 415 297 89 50 chr9 7616850 7617052 -110245575 - MIR SINE MIR -19 243 34 2041 152 0 0 chr9 7617465 7617761 -110244866 + AluSx SINE Alu 3 298 -14 398 255 66 76 chr9 7618705 7618891 -110243736 - MLT1J2 LTR MaLR -6 440 254 348 302 52 0 chr9 7619220 7619336 -110243291 + MIR SINE MIR 141 262 0 28 48 0 0 chr9 7619417 7619459 -110243168 + AT_rich Low_complexity Low_complexity 1 42 0 978 219 25 5 chr9 7619619 7619820 -110242807 - MER58A DNA MER1_type 0 224 20 348 283 87 36 chr9 7619896 7620034 -110242593 - MIR SINE MIR -112 150 6 509 223 0 6 chr9 7622360 7622517 -110240110 + (TA)n Simple_repeat Simple_repeat 1 156 0 259 143 0 0 chr9 7622517 7622559 -110240068 + (TG)n Simple_repeat Simple_repeat 2 43 0 393 248 46 0 chr9 7622623 7622732 -110239895 - MER94 DNA DNA -20 114 1 823 277 137 47 chr9 7623782 7624823 -110237804 + L1MEd LINE L1 599 1831 -745 22 35 0 0 chr9 7625221 7625250 -110237377 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr9 7625402 7625437 -110237190 + AT_rich Low_complexity Low_complexity 1 35 0 306 344 62 10 chr9 7625539 7625734 -110236893 + L1MEd LINE L1 2033 2237 -4159 513 268 38 28 chr9 7626463 7626676 -110235951 + MLT1J LTR MaLR 293 507 -4 434 296 25 49 chr9 7626770 7626932 -110235695 - MIR SINE MIR -73 189 32 892 219 12 0 chr9 7627478 7627647 -110234980 - MER5A DNA MER1_type -2 187 17 199 288 0 34 chr9 7627717 7627776 -110234851 - MIR SINE MIR -90 118 62 189 87 43 22 chr9 7627900 7627946 -110234681 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 1366 212 98 0 chr9 7628329 7628636 -110233991 - MER58B DNA MER1_type 0 341 5 531 270 145 78 chr9 7628768 7629168 -110233459 + L1ME LINE L1 5369 5795 -326 189 250 62 16 chr9 7630254 7630318 -110232309 - MIR3 SINE MIR 0 208 142 205 195 0 172 chr9 7630504 7630591 -110232036 - MIR3 SINE MIR -22 186 115 413 321 85 66 chr9 7632411 7632716 -110229911 - L2 LINE L2 -4 3268 2958 3099 96 69 5 chr9 7633824 7634261 -110228366 - MER4C LTR ERV1 0 465 1 199 303 111 0 chr9 7634359 7634458 -110228169 - MIR SINE MIR -78 184 75 268 306 20 61 chr9 7635961 7636108 -110226519 - L2 LINE L2 0 3313 3173 613 155 108 7 chr9 7637007 7637155 -110225472 + MER53 DNA DNA 1 163 -26 246 62 0 0 chr9 7637165 7637197 -110225430 + (TG)n Simple_repeat Simple_repeat 1 32 0 1590 202 3 3 chr9 7637208 7637490 -110225137 - AluJb SINE Alu -30 282 1 231 232 116 11 chr9 7637868 7637963 -110224664 + MIR SINE MIR 81 185 -77 290 240 76 58 chr9 7638373 7638508 -110224119 - LTR26 LTR ERV1 0 691 467 1048 226 9 141 chr9 7638517 7638937 -110223690 - LTR8A LTR ERV1 -328 399 35 1169 116 0 6 chr9 7639628 7639792 -110222835 + AluSg/x SINE Alu 129 291 -21 1039 192 34 14 chr9 7640366 7640574 -110222053 - MER20 DNA MER1_type -7 212 1 397 299 32 32 chr9 7642468 7642625 -110220002 - MIR SINE MIR -86 176 20 349 316 54 6 chr9 7643250 7643418 -110219209 + MIR SINE MIR 35 210 -52 272 385 68 43 chr9 7643450 7643772 -110218855 - L2 LINE L2 -8 3264 2935 515 283 64 27 chr9 7645293 7645480 -110217147 + MIR SINE MIR 20 213 -49 321 244 209 0 chr9 7645819 7645934 -110216693 + MIR SINE MIR 60 198 -64 721 277 67 9 chr9 7645953 7646177 -110216450 - MIR SINE MIR -6 256 20 5790 117 13 3 chr9 7646177 7647030 -110215597 + L1P LINE L1 3514 4374 -1772 307 39 77 0 chr9 7697049 7697101 -110165526 - L1P1 LINE L1 -710 5445 5390 6180 53 1 1 chr9 7697101 7697917 -110164710 + L1P LINE L1 3469 4284 -1862 271 103 0 0 chr9 7697935 7697974 -110164653 - MLT2C2 LTR ERVL -48 416 378 216 0 0 0 chr9 7697975 7697999 -110164628 + (CA)n Simple_repeat Simple_repeat 1 24 0 280 135 19 0 chr9 7698005 7698057 -110164570 + MLT2B1 LTR ERVL 468 520 0 231 204 0 0 chr9 7699137 7699191 -110163436 + (CA)n Simple_repeat Simple_repeat 2 55 0 1705 189 78 44 chr9 7699531 7699982 -110162645 + MER31B LTR ERV1 1 466 0 369 280 0 0 chr9 7700655 7700748 -110161879 - MER96 DNA MER1_type? 0 175 83 708 294 74 9 chr9 7701462 7701693 -110160934 - MIR SINE MIR -11 251 6 828 246 33 48 chr9 7701874 7702249 -110160378 - L1MD3 LINE L1 0 8042 7687 226 262 0 19 chr9 7702272 7702375 -110160252 + CT-rich Low_complexity Low_complexity 2 102 0 1824 149 58 22 chr9 7702423 7702785 -110159842 + THE1C LTR MaLR 1 375 0 416 255 21 27 chr9 7704235 7704366 -110158261 + MIR SINE MIR 2 134 -74 276 77 0 0 chr9 7705143 7705182 -110157445 + (TG)n Simple_repeat Simple_repeat 2 40 0 239 349 211 0 chr9 7705246 7705464 -110157163 + L2 LINE L2 2641 2904 -410 443 291 11 39 chr9 7705996 7706175 -110156452 + L2 LINE L2 3121 3294 -19 28 29 0 0 chr9 7707091 7707126 -110155501 + AT_rich Low_complexity Low_complexity 1 35 0 907 142 15 0 chr9 7707280 7707414 -110155213 - AluJo SINE Alu -176 136 1 258 250 12 12 chr9 7709151 7709231 -110153396 + MER112 DNA MER1_type 179 258 -2 14877 94 10 10 chr9 7710791 7713807 -110148820 - L1PA8 LINE L1 0 6172 3159 313 288 142 59 chr9 7714229 7714448 -110148179 - L2 LINE L2 0 3313 3077 360 341 49 9 chr9 7714655 7714878 -110147749 - L2 LINE L2 -799 2515 2284 757 175 6 79 chr9 7714894 7715071 -110147556 - MER58A DNA MER1_type -29 195 32 23 33 0 0 chr9 7715319 7715349 -110147278 + AT_rich Low_complexity Low_complexity 1 30 0 198 336 18 62 chr9 7716037 7716150 -110146477 - MIR SINE MIR -59 149 42 216 302 43 86 chr9 7716487 7716603 -110146024 - L2 LINE L2 -15 3257 3147 255 313 15 61 chr9 7716729 7716860 -110145767 + L2 LINE L2 3183 3307 -6 1871 222 49 22 chr9 7717196 7717686 -110144941 + MER87 LTR ERV1 33 535 -6 1404 225 30 35 chr9 7717974 7718343 -110144284 + MLT1A2 LTR MaLR 6 372 -2 374 236 0 22 chr9 7718328 7718417 -110144210 + MER21B LTR ERV1 1 87 -776 * 238 125 62 21 chr9 7718473 7718521 -110144106 + MER21B LTR ERV1 98 147 -716 2481 161 36 78 chr9 7718741 7719295 -110143332 - LTR26B LTR ERV1 0 531 1 2272 86 0 0 chr9 7719343 7719622 -110143005 - AluY SINE Alu -32 279 1 286 284 84 63 chr9 7719851 7720041 -110142586 + MER117 DNA MER1_type 4 197 0 207 111 0 28 chr9 7720066 7720102 -110142525 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 411 285 43 38 chr9 7720679 7720865 -110141762 - MIR3 SINE MIR -3 205 19 1156 196 30 121 chr9 7721041 7721470 -110141157 - MLT2D LTR ERVL -24 390 1 2106 91 66 0 chr9 7722606 7722893 -110139734 - AluY SINE Alu -5 306 1 21 0 0 0 chr9 7723104 7723125 -110139502 + AT_rich Low_complexity Low_complexity 1 21 0 2871 100 83 21 chr9 7723135 7723615 -110139012 - MER9 LTR ERVK -1 510 1 40 0 0 0 chr9 7723762 7723802 -110138825 + AT_rich Low_complexity Low_complexity 1 40 0 272 307 45 23 chr9 7724920 7725008 -110137619 - MIR SINE MIR -89 119 30 23 0 0 0 chr9 7725631 7725654 -110136973 + AT_rich Low_complexity Low_complexity 1 23 0 222 290 54 54 chr9 7725684 7725777 -110136850 - MIR SINE MIR -97 111 19 252 0 0 0 chr9 7725784 7725812 -110136815 + (TG)n Simple_repeat Simple_repeat 2 29 0 340 336 36 0 chr9 7725899 7726039 -110136588 + MIR SINE MIR 112 256 -6 773 176 22 60 chr9 7726124 7726306 -110136321 - MER5B DNA MER1_type 0 178 4 398 270 0 0 chr9 7726672 7726761 -110135866 - L2 LINE L2 0 3272 3184 976 201 54 0 chr9 7727781 7727985 -110134642 - MER20 DNA MER1_type 0 219 5 324 0 0 0 chr9 7728296 7728332 -110134295 + (CA)n Simple_repeat Simple_repeat 2 37 0 245 250 44 29 chr9 7728397 7728465 -110134162 + MIR SINE MIR 72 140 -68 216 0 0 0 chr9 7728465 7728489 -110134138 + (CAT)n Simple_repeat Simple_repeat 2 25 0 622 275 60 63 chr9 7728537 7728901 -110133726 + L1MB1 LINE L1 413 775 -5528 1626 243 47 56 chr9 7729352 7729436 -110133191 + L1MB1 LINE L1 801 884 -5429 2457 136 0 8 chr9 7729436 7729812 -110132815 + THE1C LTR MaLR 1 373 -2 1626 243 47 56 chr9 7729812 7730648 -110131979 + L1MB1 LINE L1 884 1793 -4520 * 3458 232 27 7 chr9 7730637 7731628 -110130999 - L1 LINE L1 -2369 3777 2767 4980 169 30 13 chr9 7731630 7733339 -110129288 + L1PA16 LINE L1 4105 5833 -333 1059 85 0 0 chr9 7733340 7733469 -110129158 + AluSg SINE Alu 5 133 -177 2369 101 7 0 chr9 7733469 7733775 -110128852 + AluSg SINE Alu 1 308 -2 1580 156 25 54 chr9 7733776 7734129 -110128498 + L1PA16 LINE L1 5815 6157 -9 5763 211 56 11 chr9 7734987 7737483 -110125144 + L1MB1 LINE L1 3798 6404 0 429 279 65 13 chr9 7738362 7738516 -110124111 + L2 LINE L2 34 195 -3119 672 278 17 43 chr9 7738535 7738769 -110123858 + L2 LINE L2 3078 3305 -8 299 290 29 88 chr9 7738952 7739393 -110123234 + MLT1I LTR MaLR 1 409 0 220 304 98 29 chr9 7739678 7739780 -110122847 - L2 LINE L2 -2 3311 3203 512 255 180 12 chr9 7740014 7740175 -110122452 - MIR SINE MIR -59 203 16 465 297 24 0 chr9 7740641 7740806 -110121821 - LTR33 LTR ERVL -4 517 349 2102 220 28 18 chr9 7740836 7741336 -110121291 + MLT1D LTR MaLR 1 505 0 900 267 50 21 chr9 7741336 7741617 -110121010 - LTR33 LTR ERVL -232 289 1 351 356 58 14 chr9 7742065 7742273 -110120354 - L2 LINE L2 -214 3058 2842 189 132 0 0 chr9 7742719 7742757 -110119870 + (CA)n Simple_repeat Simple_repeat 2 39 0 200 294 103 66 chr9 7743241 7743377 -110119250 + MIR3 SINE MIR 8 148 -60 279 318 155 0 chr9 7743441 7743589 -110119038 + MIR SINE MIR 51 221 -41 745 142 0 15 chr9 7746010 7746144 -110116483 - FLAM_C SINE Alu 0 133 2 238 276 20 82 chr9 7747011 7747109 -110115518 + L2 LINE L2 1142 1233 -2081 5636 167 13 15 chr9 7747109 7748984 -110113643 - L1PB1 LINE L1 0 6151 4286 2169 134 0 0 chr9 7748984 7749283 -110113344 - AluSq SINE Alu -14 299 1 5636 167 13 15 chr9 7749283 7749550 -110113077 - L1PB1 LINE L1 -1865 4286 4020 1556 326 65 56 chr9 7749556 7749920 -110112707 + L2 LINE L2 1229 1588 -1726 861 149 0 0 chr9 7749920 7750074 -110112553 + L1MA4 LINE L1 6145 6298 -2 1556 326 65 56 chr9 7750074 7750571 -110112056 + L2 LINE L2 1588 2098 -1216 227 303 73 28 chr9 7750956 7751065 -110111562 - L2 LINE L2 -220 3052 2939 325 325 56 51 chr9 7751499 7751874 -110110753 + HAL1 LINE L1 4 380 -2127 339 310 92 28 chr9 7751939 7752081 -110110546 + HAL1 LINE L1 480 630 -1877 2297 89 0 7 chr9 7752322 7752614 -110110013 - AluSg SINE Alu -20 290 1 207 221 13 39 chr9 7752678 7752755 -110109872 + A-rich Low_complexity Low_complexity 5 79 0 2241 152 12 14 chr9 7753379 7753799 -110108828 + L1MB3 LINE L1 5757 6175 -8 39 60 0 0 chr9 7753958 7754025 -110108602 + AT_rich Low_complexity Low_complexity 1 67 0 1929 147 17 3 chr9 7754025 7754324 -110108303 + AluSx SINE Alu 1 303 -9 411 285 57 85 chr9 7755517 7755763 -110106864 - MIR3 SINE MIR -18 244 6 1830 160 0 14 chr9 7757009 7757303 -110105324 + AluJb SINE Alu 1 290 -22 857 284 96 11 chr9 7757621 7757984 -110104643 + MLT1I LTR MaLR 1 394 -15 338 288 25 25 chr9 7759458 7759576 -110103051 + MER5A DNA MER1_type 35 152 -37 288 222 28 0 chr9 7759805 7759877 -110102750 + MLT1L LTR MaLR 5 78 -537 242 244 155 37 chr9 7759947 7760124 -110102503 + MLT1J2 LTR MaLR 72 315 -196 313 315 89 98 chr9 7761007 7761334 -110101293 + L2 LINE L2 2930 3253 -19 2774 10 0 0 chr9 7761340 7761643 -110100984 + AluYb8 SINE Alu 16 318 0 23 0 0 0 chr9 7761643 7761666 -110100961 + AT_rich Low_complexity Low_complexity 1 23 0 255 289 22 11 chr9 7761704 7761794 -110100833 - MER103 DNA DNA -75 91 1 395 349 12 41 chr9 7761891 7761992 -110100635 - MIR3 SINE MIR -21 187 92 1732 251 40 41 chr9 7761992 7762547 -110100080 - MLT2B3 LTR ERVL 0 554 1 395 349 12 41 chr9 7762547 7762617 -110100010 - MIR3 SINE MIR -116 92 21 1134 302 51 20 chr9 7763039 7763430 -110099197 + MLT2E LTR ERVL 167 569 -59 1454 264 79 39 chr9 7763617 7764369 -110098258 + ERVL LTR ERVL 2104 2900 -2585 1924 163 56 28 chr9 7764384 7764459 -110098168 - MLT2A2 LTR ERVL 0 554 483 2284 114 0 0 chr9 7764459 7764767 -110097860 + AluSq SINE Alu 1 308 -5 1924 163 56 28 chr9 7764767 7765234 -110097393 - MLT2A2 LTR ERVL -71 483 1 182 33 67 0 chr9 7765529 7765559 -110097068 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 1869 233 93 47 chr9 7765843 7766487 -110096140 + ERVL LTR ERVL 3813 4486 -1278 1891 278 66 12 chr9 7766540 7766794 -110095833 + ERVL LTR ERVL 4572 4811 -953 3603 142 23 5 chr9 7766794 7767393 -110095234 + MER4B LTR ERV1 1 610 0 1891 278 66 12 chr9 7767393 7767786 -110094841 + ERVL LTR ERVL 4811 5254 -510 3591 173 21 6 chr9 7767788 7768486 -110094141 + MER50 LTR ERV1 1 709 -25 4517 125 62 15 chr9 7768486 7769041 -110093586 - MER4E LTR ERV1 0 779 179 2202 91 14 7 chr9 7769041 7769328 -110093299 - AluSc SINE Alu -20 289 1 4517 125 62 15 chr9 7769328 7769516 -110093111 - MER4E LTR ERV1 -600 179 1 1112 272 91 7 chr9 7769535 7769954 -110092673 + MLT2B2 LTR ERVL 1 454 -61 210 250 0 0 chr9 7769995 7770039 -110092588 + (TATG)n Simple_repeat Simple_repeat 2 45 0 396 0 0 0 chr9 7770047 7770091 -110092536 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 270 122 0 0 chr9 7770123 7770164 -110092463 + ERVL LTR ERVL 5257 5297 -467 25 0 0 0 chr9 7771215 7771240 -110091387 + AT_rich Low_complexity Low_complexity 1 25 0 199 299 104 0 chr9 7771874 7771941 -110090686 - L2 LINE L2 -39 3233 3160 1775 190 16 19 chr9 7772879 7772941 -110089686 - MLT1A1 LTR MaLR 0 365 304 574 88 0 0 chr9 7772941 7773021 -110089606 + MADE1 DNA Mariner 1 80 0 1775 190 16 19 chr9 7773021 7773322 -110089305 - MLT1A1 LTR MaLR -61 304 3 303 304 188 0 chr9 7773966 7774078 -110088549 + MIR3 SINE MIR 67 199 -9 539 289 96 56 chr9 7774118 7774568 -110088059 + L1ME LINE L1 21 488 -5582 455 279 52 73 chr9 7774574 7774744 -110087883 + L1ME LINE L1 102 274 -5796 1960 160 0 0 chr9 7774744 7775050 -110087577 + AluSx SINE Alu 1 306 -6 455 279 52 73 chr9 7775050 7775248 -110087379 + L1ME LINE L1 274 462 -5608 * 28925 103 13 25 chr9 7775230 7781333 -110081294 + L1PA7 LINE L1 371 6468 -1 4083 276 69 10 chr9 7781339 7783223 -110079404 + L1M4 LINE L1 2271 4266 -1880 1106 216 82 40 chr9 7783228 7783318 -110079309 + L1M4 LINE L1 4407 4492 -1654 219 36 0 0 chr9 7783318 7783346 -110079281 + (CA)n Simple_repeat Simple_repeat 2 29 0 1106 216 82 40 chr9 7783346 7783705 -110078922 + L1M4 LINE L1 4492 4875 -1271 439 237 96 20 chr9 7783731 7783929 -110078698 - MLT1J1 LTR MaLR 0 446 234 487 242 8 8 chr9 7784004 7784124 -110078503 - MLT1J1 LTR MaLR -326 120 1 396 0 0 0 chr9 7784847 7784891 -110077736 + (TG)n Simple_repeat Simple_repeat 2 45 0 227 313 82 41 chr9 7785255 7785402 -110077225 - MIR SINE MIR -14 248 96 302 206 29 0 chr9 7785889 7785957 -110076670 + Charlie8 DNA MER1_type 1348 1417 -1000 335 349 11 48 chr9 7786108 7786297 -110076330 + MER5A DNA MER1_type 2 183 -6 1650 140 118 4 chr9 7786626 7786905 -110075722 - AluSx SINE Alu -1 311 1 21 57 0 0 chr9 7786908 7786943 -110075684 + AT_rich Low_complexity Low_complexity 1 35 0 216 0 0 0 chr9 7787478 7787502 -110075125 + (T)n Simple_repeat Simple_repeat 1 24 0 202 349 0 0 chr9 7789071 7789134 -110073493 - L2 LINE L2 0 3272 3210 856 222 63 12 chr9 7790608 7791048 -110071579 - MLT1D LTR MaLR 0 505 7 6803 193 31 7 chr9 7791266 7791822 -110070805 - L1PA16 LINE L1 -1 6165 5624 2041 141 7 0 chr9 7791822 7792119 -110070508 - AluSx SINE Alu -13 299 1 6803 193 31 7 chr9 7792119 7793985 -110068642 - L1PA16 LINE L1 -542 5624 3675 213 65 0 0 chr9 7793985 7794016 -110068611 + (TTG)n Simple_repeat Simple_repeat 2 32 0 6803 193 31 7 chr9 7794016 7794143 -110068484 - L1PA16 LINE L1 -2491 3675 3553 3007 85 15 0 chr9 7794145 7794556 -110068071 + MLT2A2 LTR ERVL 2 418 -35 313 187 33 44 chr9 7794570 7794661 -110067966 + L1MC4 LINE L1 6614 6703 -1339 374 127 14 0 chr9 7794663 7794734 -110067893 + (TA)n Simple_repeat Simple_repeat 1 72 0 326 100 0 0 chr9 7794736 7794786 -110067841 + MLT2A2 LTR ERVL 404 453 0 5205 260 32 31 chr9 7794786 7796868 -110065759 - L1PA16 LINE L1 -2590 3556 1473 4871 234 59 26 chr9 7797054 7797724 -110064903 + L1ME1 LINE L1 3304 3950 -2196 1990 195 29 0 chr9 7797724 7798103 -110064524 + MLT1B LTR MaLR 1 390 0 4871 234 59 26 chr9 7798103 7799185 -110063442 + L1ME1 LINE L1 3950 5115 -1031 1643 207 58 24 chr9 7799194 7799610 -110063017 + L1ME1 LINE L1 5491 5920 -246 1946 144 31 7 chr9 7799622 7799913 -110062714 + AluSx SINE Alu 1 298 -14 425 228 6 64 chr9 7799919 7799964 -110062663 + L1MA10 LINE L1 6172 6218 -116 1764 189 5 39 chr9 7799964 7800346 -110062281 + MLT1A2 LTR MaLR 4 372 -2 425 228 6 64 chr9 7800346 7800471 -110062156 + L1MA10 LINE L1 6218 6332 -2 1812 141 3 40 chr9 7803006 7803303 -110059324 - AluSq SINE Alu -27 286 1 953 252 20 56 chr9 7803386 7803630 -110058997 + MLT2F LTR ERVL 369 601 -62 287 85 21 0 chr9 7803630 7803677 -110058950 + (CA)n Simple_repeat Simple_repeat 2 49 0 953 252 20 56 chr9 7803677 7803738 -110058889 + MLT2F LTR ERVL 601 663 0 374 321 9 0 chr9 7803859 7803965 -110058662 - L2 LINE L2 -19 3294 3188 183 80 0 0 chr9 7805122 7805147 -110057480 + (TC)n Simple_repeat Simple_repeat 2 26 0 369 0 0 0 chr9 7805147 7805188 -110057439 + (CA)n Simple_repeat Simple_repeat 1 41 0 642 305 59 29 chr9 7805200 7805642 -110056985 - L1MEc LINE L1 -5873 523 69 703 57 0 0 chr9 7806311 7806399 -110056228 + AluY SINE Alu 1 88 -222 2530 59 3 3 chr9 7806746 7807052 -110055575 + AluSc SINE Alu 4 309 0 240 35 0 0 chr9 7807291 7807320 -110055307 + (A)n Simple_repeat Simple_repeat 1 29 0 304 247 37 12 chr9 7807321 7807402 -110055225 - L2 LINE L2 -5 3267 3185 320 333 42 0 chr9 7807834 7807954 -110054673 - MIR SINE MIR -83 179 55 195 424 47 0 chr9 7809305 7809390 -110053237 - L2 LINE L2 -63 3209 3121 208 353 60 24 chr9 7809540 7809707 -110052920 + L2 LINE L2 2507 2679 -635 242 254 32 16 chr9 7809787 7809850 -110052777 - L2 LINE L2 -1 3312 3249 2083 179 3 6 chr9 7810157 7810520 -110052107 - MLT1A1 LTR MaLR -3 362 1 625 274 46 20 chr9 7810523 7810720 -110051907 + MIR SINE MIR 61 262 0 254 309 9 18 chr9 7811706 7811816 -110050811 + CT-rich Low_complexity Low_complexity 4 112 0 228 200 0 20 chr9 7812252 7812302 -110050325 - L2 LINE L2 -5 3267 3219 1928 174 10 0 chr9 7812519 7812824 -110049803 + AluJb SINE Alu 5 312 0 391 365 97 24 chr9 7813751 7814011 -110048616 - L2 LINE L2 -767 2547 2267 275 281 41 89 chr9 7814011 7814157 -110048470 + MIR3 SINE MIR 4 142 -66 333 280 59 59 chr9 7815103 7815221 -110047406 - MER5B DNA MER1_type 0 178 61 1401 137 30 5 chr9 7815370 7815660 -110046967 + MLT2D LTR ERVL 3 349 -65 1304 20 0 0 chr9 7815670 7815822 -110046805 - L1PA2 LINE L1 0 6155 6004 809 175 0 0 chr9 7816632 7816758 -110045869 - FLAM_A SINE Alu -7 126 1 180 321 19 0 chr9 7817604 7817657 -110044970 + L2 LINE L2 3255 3308 -5 547 313 35 31 chr9 7817807 7818034 -110044593 + MIR SINE MIR 8 235 -27 182 289 0 0 chr9 7818004 7818049 -110044578 + L2 LINE L2 3251 3295 -18 * 2080 198 75 13 chr9 7818080 7818545 -110044082 + MLT1D LTR MaLR 12 505 0 2367 317 112 59 chr9 7819161 7819786 -110042841 - L2 LINE L2 0 3313 2723 2131 75 11 4 chr9 7819786 7820052 -110042575 - AluSp SINE Alu -7 306 39 2367 317 112 59 chr9 7820052 7822061 -110040566 - L2 LINE L2 -590 2723 541 239 267 22 0 chr9 7822084 7822174 -110040453 + (TATATG)n Simple_repeat Simple_repeat 4 95 0 333 292 23 46 chr9 7823601 7823731 -110038896 - L2 LINE L2 0 3313 3187 342 0 0 0 chr9 7824212 7824250 -110038377 + (CA)n Simple_repeat Simple_repeat 2 39 0 1984 163 14 0 chr9 7825883 7826238 -110036389 + MER46B DNA MER2_type -1 233 -3 291 303 138 9 chr9 7826242 7826351 -110036276 - MIR SINE MIR -130 132 10 484 305 17 40 chr9 7826393 7826570 -110036057 - MER5B DNA MER1_type -3 175 3 967 321 111 38 chr9 7826620 7826662 -110035965 - L2 LINE L2 -5 3308 3271 1715 155 197 11 chr9 7826662 7827023 -110035604 + MSTA LTR MaLR 1 428 0 9583 118 35 39 chr9 7827025 7828608 -110034019 + MSTA-int LTR MaLR 3 1580 0 1363 176 92 42 chr9 7828608 7828965 -110033662 + THE1C LTR MaLR 1 375 0 967 321 111 38 chr9 7828965 7829367 -110033260 - L2 LINE L2 -41 3272 2827 5857 147 11 31 chr9 7830673 7831471 -110031156 - L1MA3 LINE L1 0 7724 6912 2133 117 3 13 chr9 7831471 7831770 -110030857 - AluSq SINE Alu -8 305 10 5857 147 11 31 chr9 7831770 7833062 -110029565 - L1MA3 LINE L1 -812 6912 5677 19314 167 39 12 chr9 7833070 7834730 -110027897 - L1MA3 LINE L1 -2748 4817 3202 2265 104 0 13 chr9 7834730 7835037 -110027590 + AluSg SINE Alu 1 303 -7 19314 167 39 12 chr9 7835037 7835856 -110026771 - L1MA3 LINE L1 -4363 3202 2406 2397 84 0 10 chr9 7835856 7836166 -110026461 - AluY SINE Alu -4 307 1 19314 167 39 12 chr9 7836166 7838364 -110024263 - L1MA3 LINE L1 -5159 2406 14 369 0 0 0 chr9 7838596 7838637 -110023990 + (GA)n Simple_repeat Simple_repeat 2 42 0 199 318 30 15 chr9 7838831 7838897 -110023730 - L3b LINE CR1 0 1583 1517 2098 138 33 28 chr9 7838917 7839279 -110023348 - THE1B LTR MaLR 0 364 1 384 360 14 7 chr9 7839279 7839418 -110023209 - MIR3 SINE MIR -25 183 44 243 295 84 0 chr9 7840548 7840643 -110021984 + MIR SINE MIR 121 223 -39 242 294 71 0 chr9 7840677 7840762 -110021865 + MIR SINE MIR 121 211 -51 303 264 45 15 chr9 7840837 7841038 -110021589 + MER113 DNA MER1_type? 19 225 -296 480 229 238 0 chr9 7841109 7841231 -110021396 + MER5A DNA MER1_type 9 159 -30 350 245 115 43 chr9 7842417 7842556 -110020071 - MIR3 SINE MIR 0 208 60 1124 265 54 52 chr9 7844326 7844771 -110017856 - MLT1J1 LTR MaLR 0 446 1 340 296 12 0 chr9 7844900 7844981 -110017646 - L2 LINE L2 0 3272 3191 180 0 0 0 chr9 7845306 7845326 -110017301 + (CAA)n Simple_repeat Simple_repeat 2 21 0 293 298 107 16 chr9 7845546 7845667 -110016960 + MIR SINE MIR 17 148 -114 1363 213 24 14 chr9 7846510 7846801 -110015826 - MLT1A1 LTR MaLR -71 294 1 378 237 89 106 chr9 7847197 7847433 -110015194 - MLT1L LTR MaLR -221 394 163 504 196 0 14 chr9 7847523 7847661 -110014966 - LTR37A LTR ERV1 0 426 291 34800 90 18 11 chr9 7847699 7853809 -110008818 + L1PA6 LINE L1 11 6154 0 21 0 0 0 chr9 7853809 7853830 -110008797 + AT_rich Low_complexity Low_complexity 1 21 0 1978 118 38 3 chr9 7853869 7854157 -110008470 + AluSx SINE Alu 1 298 -14 634 221 12 91 chr9 7854166 7854420 -110008207 - LTR37A LTR ERV1 -174 252 19 827 217 27 0 chr9 7855464 7855648 -110006979 - MER5A DNA MER1_type 0 189 1 191 231 183 10 chr9 7857224 7857328 -110005299 - MIR SINE MIR 0 262 141 5923 88 11 16 chr9 7857395 7858293 -110004334 - L1PA12 LINE L1 0 6168 5275 1191 190 86 30 chr9 7858383 7858793 -110003834 + MLT1D LTR MaLR 1 483 -22 242 243 139 56 chr9 7859491 7859635 -110002992 - MIR SINE MIR -26 236 81 572 295 100 33 chr9 7860601 7860930 -110001697 + LTR33 LTR ERVL 167 517 -4 212 167 0 0 chr9 7862361 7862403 -110000224 + A-rich Low_complexity Low_complexity 1 42 0 1047 291 42 9 chr9 7863874 7864207 -109998420 - MLT1I LTR MaLR -3 406 63 222 320 120 10 chr9 7865346 7865446 -109997181 - L2 LINE L2 0 3313 3203 242 217 0 0 chr9 7866168 7866214 -109996413 - MIR SINE MIR -110 152 107 1101 211 52 83 chr9 7866570 7867015 -109995612 + MLT1C LTR MaLR 37 467 0 217 87 22 22 chr9 7867044 7867090 -109995537 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 1822 150 89 29 chr9 7867169 7867549 -109995078 + MER57A LTR ERV1 1 403 0 3062 168 3 43 chr9 7867582 7868111 -109994516 + MLT2B3 LTR ERVL 1 507 -47 1826 171 33 0 chr9 7868111 7868444 -109994183 + MER2 DNA MER2_type 1 344 0 3062 168 3 43 chr9 7868444 7868491 -109994136 + MLT2B3 LTR ERVL 507 554 0 293 216 0 0 chr9 7868642 7868693 -109993934 - MLT2B3 LTR ERVL -175 379 329 430 292 192 9 chr9 7869085 7869304 -109993323 - MIR SINE MIR 0 262 4 200 354 0 97 chr9 7869452 7869565 -109993062 + MIR SINE MIR 19 120 -88 12173 129 27 13 chr9 7871167 7872108 -109990519 - Tigger1 DNA MER2_type 0 2418 1491 2259 115 0 0 chr9 7872108 7872404 -109990223 - AluSg SINE Alu -14 296 1 12173 129 27 13 chr9 7872404 7873754 -109988873 - Tigger1 DNA MER2_type -927 1491 1 379 311 7 40 chr9 7873916 7874064 -109988563 - L2 LINE L2 -4 3309 3167 448 293 66 52 chr9 7874264 7874476 -109988151 - MLT1K LTR MaLR -185 403 189 373 215 45 0 chr9 7874543 7874632 -109987995 - FRAM SINE Alu -72 94 11 229 262 7 117 chr9 7874941 7875086 -109987541 - MIR SINE MIR -27 235 107 196 265 61 92 chr9 7875804 7875902 -109986725 - MIR SINE MIR -48 214 120 914 210 88 46 chr9 7875964 7876293 -109986334 - MER2 DNA MER2_type -1 343 1 261 0 0 0 chr9 7877345 7877374 -109985253 + (T)n Simple_repeat Simple_repeat 1 29 0 641 256 55 29 chr9 7877453 7877691 -109984936 - MLT1A2 LTR MaLR 0 374 131 222 413 7 21 chr9 7877839 7877982 -109984645 + MIR SINE MIR 6 146 -116 537 304 42 6 chr9 7878181 7878349 -109984278 + MER5B DNA MER1_type 1 174 -4 5161 170 29 21 chr9 7878445 7879464 -109983163 - L1PA16 LINE L1 -10 6156 5123 1860 180 3 0 chr9 7879464 7879775 -109982852 + AluJb SINE Alu 1 312 0 5161 170 29 21 chr9 7879775 7880493 -109982134 - L1PA16 LINE L1 -1043 5123 4412 1718 237 60 5 chr9 7880972 7881390 -109981237 + MLT1A1-int LTR MaLR 1294 1734 -1 1364 217 26 29 chr9 7881397 7881710 -109980917 + MLT1A1 LTR MaLR 1 312 -53 365 298 0 11 chr9 7881883 7881977 -109980650 + L2 LINE L2 3180 3272 0 464 229 28 28 chr9 7882615 7882759 -109979868 - L1MC4a LINE L1 -1839 5969 5826 185 267 17 50 chr9 7883049 7883109 -109979518 - L2 LINE L2 -667 2647 2590 964 271 12 0 chr9 7883780 7884027 -109978600 + MIR SINE MIR 13 262 0 6722 208 37 53 chr9 7884452 7886170 -109976457 + L1ME1 LINE L1 3657 5338 -828 1469 173 0 0 chr9 7886170 7886401 -109976226 + AluJb SINE Alu 76 306 -6 6722 208 37 53 chr9 7886401 7886892 -109975735 + L1ME1 LINE L1 5338 5835 -331 324 91 0 30 chr9 7886896 7886946 -109975681 + L1MA7 LINE L1 6227 6290 -1 1722 182 8 54 chr9 7886958 7886994 -109975633 + L1MB5 LINE L1 5821 5857 -317 3735 111 8 2 chr9 7886994 7887501 -109975126 + MER75 DNA T2_type 5 514 0 1722 182 8 54 chr9 7887501 7887698 -109974929 + L1MB5 LINE L1 5857 6033 -141 1731 182 7 3 chr9 7887698 7887994 -109974633 - AluJb SINE Alu -15 297 1 1722 182 8 54 chr9 7887994 7888128 -109974499 + L1MB5 LINE L1 6033 6172 -2 301 372 30 12 chr9 7888323 7888487 -109974140 + L3 LINE CR1 35 201 -1376 432 248 74 109 chr9 7888497 7888699 -109973928 + L3 LINE CR1 403 597 -980 216 333 211 0 chr9 7888939 7889029 -109973598 - L2 LINE L2 -22 3250 3142 440 300 73 0 chr9 7889148 7889258 -109973369 - MLT1J2 LTR MaLR -145 305 188 311 280 30 10 chr9 7889290 7889390 -109973237 - MLT1J2 LTR MaLR -342 108 7 477 28 9 255 chr9 7889658 7889764 -109972863 - MADE1 DNA Mariner 0 80 1 485 292 92 33 chr9 7891091 7891331 -109971296 + MIR SINE MIR 9 262 0 208 333 14 0 chr9 7891988 7892057 -109970570 - MIR SINE MIR -113 149 80 286 272 25 0 chr9 7893196 7893277 -109969350 + L2 LINE L2 2998 3080 -192 228 324 109 39 chr9 7893481 7893711 -109968916 + L2 LINE L2 2772 3057 -215 1973 138 41 29 chr9 7894541 7894881 -109967746 + MER2 DNA MER2_type 1 344 0 219 259 55 28 chr9 7895023 7895121 -109967506 + L2 LINE L2 2875 2983 -330 1154 259 95 18 chr9 7895159 7895549 -109967078 - LTR16A LTR ERVL -13 437 18 441 253 140 43 chr9 7896029 7896400 -109966227 - L1ME4a LINE L1 -1 6120 5714 430 313 40 45 chr9 7896565 7896741 -109965886 + MIR3 SINE MIR 33 207 -1 410 290 15 8 chr9 7897374 7897505 -109965122 - MIR SINE MIR -10 252 121 6080 161 46 18 chr9 7897914 7898338 -109964289 + Tigger1 DNA MER2_type 3 413 -2005 2188 96 0 0 chr9 7898338 7898610 -109964017 + AluSg SINE Alu 2 273 -37 222 37 0 0 chr9 7898614 7898641 -109963986 + (CAA)n Simple_repeat Simple_repeat 1 27 0 6080 161 46 18 chr9 7898641 7899295 -109963332 + Tigger1 DNA MER2_type 415 1117 -1301 2541 127 117 5 chr9 7899301 7899719 -109962908 + MER4C LTR ERV1 1 465 0 446 115 0 0 chr9 7899720 7899781 -109962846 + Tigger1 DNA MER2_type 1120 1180 -1238 7753 136 14 19 chr9 7899951 7900568 -109962059 + Tigger1 DNA MER2_type 1187 1795 -623 2191 134 0 0 chr9 7900568 7900873 -109961754 + AluSg SINE Alu 1 305 -5 7753 136 14 19 chr9 7900873 7901494 -109961133 + Tigger1 DNA MER2_type 1795 2418 0 239 257 149 0 chr9 7901897 7901971 -109960656 + L2 LINE L2 3203 3287 -26 7516 49 1 0 chr9 7902305 7903750 -109958877 - L1PA5 LINE L1 0 6154 4700 245 316 70 18 chr9 7904053 7904167 -109958460 - MIR SINE MIR -44 218 99 305 277 79 2 chr9 7904864 7904995 -109957632 + MIR SINE MIR 18 157 -92 639 301 128 38 chr9 7905751 7906595 -109956032 - L2 LINE L2 0 3313 2380 256 260 128 108 chr9 7906726 7906976 -109955651 + MIR SINE MIR 8 262 0 189 295 67 95 chr9 7907092 7907197 -109955430 + MIR SINE MIR 45 146 -62 211 263 147 32 chr9 7907353 7907448 -109955179 - MIR SINE MIR -71 191 86 1345 155 116 5 chr9 7907717 7908013 -109954614 - MER33 DNA MER1_type -4 320 1 195 100 0 0 chr9 7908312 7908342 -109954285 + (TA)n Simple_repeat Simple_repeat 2 31 0 333 270 174 0 chr9 7909286 7909401 -109953226 + MIR SINE MIR 60 194 -68 479 313 44 22 chr9 7910663 7910845 -109951782 + MER5A DNA MER1_type 1 186 -3 268 214 2 2 chr9 7911782 7911847 -109950780 - MLT1L LTR MaLR -137 465 310 219 289 0 0 chr9 7912200 7912245 -109950382 + polypurine Low_complexity Low_complexity 3 47 0 2269 97 0 17 chr9 7913483 7913783 -109948844 + AluY SINE Alu 1 295 -16 318 259 47 0 chr9 7915140 7915225 -109947402 - MIR3 SINE MIR -8 200 112 2044 299 56 19 chr9 7915235 7916217 -109946410 - L2 LINE L2 -1 3312 2298 2329 112 0 0 chr9 7917101 7917406 -109945221 - AluSx SINE Alu -7 305 1 211 294 22 66 chr9 7917500 7917636 -109944991 - MIR SINE MIR -42 220 91 237 263 158 21 chr9 7918218 7918313 -109944314 - MIR SINE MIR -69 193 86 244 207 64 129 chr9 7918560 7918700 -109943927 + MIR SINE MIR 66 196 -66 594 101 13 0 chr9 7918851 7918930 -109943697 - MADE1 DNA Mariner 0 80 1 262 315 130 55 chr9 7919496 7919595 -109943032 + L2 LINE L2 3116 3231 -41 1743 188 94 31 chr9 7919595 7919946 -109942681 - MER93b LTR ERV1 0 373 1 262 315 130 55 chr9 7919946 7919992 -109942635 + L2 LINE L2 3231 3272 0 26 0 0 0 chr9 7920223 7920249 -109942378 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr9 7920453 7920477 -109942150 + GC_rich Low_complexity Low_complexity 1 24 0 2472 130 154 82 chr9 7920722 7921285 -109941342 - LTR18B LTR ERVL -10 604 1 10693 160 10 2 chr9 7921438 7923079 -109939548 - HERVL18 LTR ERVL 0 6047 4394 5068 166 8 65 chr9 7923081 7923995 -109938632 - HERVL18 LTR ERVL -2468 3579 2718 * 13385 189 15 5 chr9 7923992 7926293 -109936334 - HERVL18 LTR ERVL -3595 2452 68 969 228 0 0 chr9 7926307 7926487 -109936140 + HERVL18 LTR ERVL 1065 1244 -4803 2411 135 136 131 chr9 7926576 7927185 -109935442 - LTR18B LTR ERVL 0 614 3 480 369 5 5 chr9 7927495 7927682 -109934945 - MIR3 SINE MIR -2 206 20 717 195 32 32 chr9 7927761 7927915 -109934712 - MER5A DNA MER1_type -35 154 1 722 328 80 48 chr9 7927982 7928986 -109933641 - L2 LINE L2 0 3272 2233 326 283 242 0 chr9 7929279 7929399 -109933228 + MIR SINE MIR 89 237 -25 1737 204 115 87 chr9 7929650 7930257 -109932370 - MLT1E3 LTR MaLR 0 624 1 180 0 0 0 chr9 7930503 7930523 -109932104 + (A)n Simple_repeat Simple_repeat 1 20 0 2451 158 61 7 chr9 7931844 7932256 -109930371 + Tigger2a DNA MER2_type 1 434 0 244 353 49 8 chr9 7932321 7932443 -109930184 + L3 LINE CR1 1356 1482 -95 213 364 64 16 chr9 7933104 7933261 -109929366 + MIR SINE MIR 55 223 -39 26 88 0 0 chr9 7933422 7933490 -109929137 + AT_rich Low_complexity Low_complexity 1 68 0 279 297 59 20 chr9 7933942 7934043 -109928584 - MIR SINE MIR -48 214 110 287 282 141 43 chr9 7934345 7934508 -109928119 + MIR SINE MIR 20 198 -64 21 0 0 0 chr9 7934530 7934551 -109928076 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 7935242 7935264 -109927363 + GC_rich Low_complexity Low_complexity 1 22 0 2341 91 0 13 chr9 7935604 7935911 -109926716 - AluSq SINE Alu -10 303 1 10975 136 42 7 chr9 7935916 7937965 -109924662 - Tigger1 DNA MER2_type -242 2176 1 260 250 9 26 chr9 7938763 7938879 -109923748 + (TA)n Simple_repeat Simple_repeat 1 114 0 396 59 0 0 chr9 7938884 7938935 -109923692 + (TG)n Simple_repeat Simple_repeat 1 51 0 359 329 43 23 chr9 7938937 7939115 -109923512 + MIR3 SINE MIR 10 194 -14 26 0 0 0 chr9 7939370 7939396 -109923231 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr9 7940078 7940099 -109922528 + AT_rich Low_complexity Low_complexity 1 21 0 1087 286 107 28 chr9 7940236 7940770 -109921857 - L1MC4a LINE L1 -1926 5882 5307 383 303 139 24 chr9 7940773 7941146 -109921481 - L1MC4a LINE L1 -846 5300 4885 701 158 113 15 chr9 7941168 7941301 -109921326 + FAM SINE Alu 20 165 -20 23 68 0 0 chr9 7941302 7941346 -109921281 + AT_rich Low_complexity Low_complexity 1 44 0 329 169 12 0 chr9 7941365 7941448 -109921179 + (TA)n Simple_repeat Simple_repeat 2 85 0 542 341 65 11 chr9 7941448 7941944 -109920683 - L1MC4a LINE L1 -1301 4845 4318 342 0 0 0 chr9 7942009 7942047 -109920580 + (TG)n Simple_repeat Simple_repeat 1 38 0 315 335 76 38 chr9 7942058 7942348 -109920279 - L1MC4a LINE L1 -2476 3670 3370 1650 199 0 4 chr9 7942354 7942635 -109919992 + AluJo SINE Alu 1 280 -32 1423 244 101 7 chr9 7942722 7943136 -109919491 + MLT1D LTR MaLR 51 503 -2 560 217 45 19 chr9 7943215 7943372 -109919255 - HAL1b LINE L1 -849 499 339 24 53 0 0 chr9 7943953 7943991 -109918636 + AT_rich Low_complexity Low_complexity 1 38 0 663 238 50 30 chr9 7946156 7946358 -109916269 + MLT1I LTR MaLR 204 409 0 294 203 68 14 chr9 7946356 7946430 -109916197 + MER20B DNA MER1_type 1 78 -705 * 21 71 0 0 chr9 7946655 7946697 -109915930 + AT_rich Low_complexity Low_complexity 1 42 0 233 316 13 26 chr9 7946723 7946799 -109915828 + L2 LINE L2 3190 3264 -8 466 301 38 0 chr9 7948821 7948954 -109913673 - MIR SINE MIR -64 198 61 415 306 108 16 chr9 7949001 7949187 -109913440 - MIR SINE MIR -59 203 1 480 319 32 27 chr9 7949607 7949795 -109912832 - MIR SINE MIR -40 222 34 224 100 25 0 chr9 7950881 7950921 -109911706 + (TTTTTA)n Simple_repeat Simple_repeat 2 42 0 1350 13 0 0 chr9 7950927 7951082 -109911545 - L1PA2 LINE L1 -4 6151 5997 572 106 14 0 chr9 7951082 7951172 -109911455 + L1PA2 LINE L1 5903 6000 -161 21 36 0 0 chr9 7951740 7951768 -109910859 + AT_rich Low_complexity Low_complexity 1 28 0 7395 26 8 0 chr9 7952075 7952943 -109909684 - L1PA5 LINE L1 -5 6149 5275 263 296 35 70 chr9 7953191 7953210 -109909417 - MER5A DNA MER1_type -1 188 170 1359 171 117 107 chr9 7953210 7953308 -109909319 - MSTD LTR MaLR 0 396 300 2308 110 0 3 chr9 7953308 7953618 -109909009 - AluSg SINE Alu -1 309 1 1359 171 117 107 chr9 7953618 7953911 -109908716 - MSTD LTR MaLR -96 300 1 263 296 35 70 chr9 7953911 7954006 -109908621 - MER5A DNA MER1_type -19 170 78 2297 248 55 23 chr9 7954013 7954674 -109907953 + L1ME1 LINE L1 5480 6161 -5 363 44 0 0 chr9 7954801 7954846 -109907781 + (TG)n Simple_repeat Simple_repeat 1 45 0 219 186 0 0 chr9 7955082 7955125 -109907502 + (TATATG)n Simple_repeat Simple_repeat 3 45 0 1451 127 16 65 chr9 7955134 7955441 -109907186 + L1MB8 LINE L1 5887 6178 0 2528 233 49 50 chr9 7955523 7956465 -109906162 + L1MC5 LINE L1 6638 7578 -383 445 242 117 16 chr9 7956606 7956734 -109905893 + MER21B LTR ERV1 363 503 -360 489 194 57 87 chr9 7956766 7956825 -109905802 + L1MC5 LINE L1 7618 7677 -284 2082 134 3 10 chr9 7956825 7957138 -109905489 - AluSx SINE Alu -1 311 1 489 194 57 87 chr9 7957138 7957377 -109905250 + L1MC5 LINE L1 7677 7907 -54 1141 201 219 72 chr9 7958344 7958861 -109903766 + MLT1E1 LTR MaLR 1 654 0 316 205 60 12 chr9 7959613 7959696 -109902931 + MIR3 SINE MIR 87 173 -35 1003 282 104 14 chr9 7959829 7960272 -109902355 + L1MC4a LINE L1 5413 5895 -1913 2283 89 3 52 chr9 7960282 7960609 -109902018 + AluSp SINE Alu 3 313 0 280 125 31 0 chr9 7960639 7960703 -109901924 + (TA)n Simple_repeat Simple_repeat 1 66 0 21 71 0 0 chr9 7960968 7961010 -109901617 + AT_rich Low_complexity Low_complexity 1 42 0 615 298 8 55 chr9 7961566 7961804 -109900823 + MIR SINE MIR 20 246 -16 555 220 143 14 chr9 7961798 7961982 -109900645 - MIR SINE MIR -19 243 40 * 2156 255 18 8 chr9 7963549 7964063 -109898564 - LTR40a LTR ERVL 0 519 1 808 263 95 0 chr9 7964063 7964295 -109898332 - HERVL40 LTR ERVL 0 5530 5277 514 324 17 29 chr9 7964281 7964522 -109898105 - MER89-int LTR ERV1 -319 6482 6245 * 350 266 48 96 chr9 7964619 7964848 -109897779 - HERVL40 LTR ERVL -333 2704 2487 781 239 67 100 chr9 7965065 7965395 -109897232 - HERVL40 LTR ERVL -688 4660 2034 2119 222 24 30 chr9 7965429 7965670 -109896957 + MLT1D LTR MaLR 8 249 -256 2118 109 53 34 chr9 7965670 7966027 -109896600 - THE1B LTR MaLR 0 364 1 2119 222 24 30 chr9 7966027 7966286 -109896341 + MLT1D LTR MaLR 249 505 0 7038 251 47 30 chr9 7966288 7968187 -109894440 - HERVL40 LTR ERVL -1269 4261 2330 886 284 74 53 chr9 7968187 7968692 -109893935 + L2 LINE L2 2750 3274 -39 1240 199 45 87 chr9 8020552 8020933 -109841694 - MLT1A1 LTR MaLR 0 365 1 291 303 174 17 chr9 8021559 8021800 -109840827 + L1MC/D LINE L1 5294 5572 -2236 916 222 4 78 chr9 8021800 8021957 -109840670 + MLT1A1 LTR MaLR 1 133 -232 1807 174 0 10 chr9 8021957 8022262 -109840365 + AluJo SINE Alu 1 302 -10 916 222 4 78 chr9 8022262 8022361 -109840266 + MLT1A1 LTR MaLR 133 238 -127 489 306 41 0 chr9 8023594 8023741 -109838886 + MIR3 SINE MIR 50 202 -6 238 282 24 12 chr9 8024099 8024184 -109838443 - LTR16A1 LTR ERVL -25 432 347 682 271 107 27 chr9 8025301 8025469 -109837158 + LTR16C LTR ERVL 209 407 -84 756 164 99 6 chr9 8025469 8025640 -109836987 - MER53 DNA DNA 0 189 3 682 271 107 27 chr9 8025640 8025733 -109836894 + LTR16C LTR ERVL 407 491 0 509 284 52 90 chr9 8025877 8026243 -109836384 + MLT1J LTR MaLR 158 509 -2 249 333 0 29 chr9 8026295 8026364 -109836263 + L2 LINE L2 3009 3075 -238 204 330 144 0 chr9 8026415 8026512 -109836115 + MIR SINE MIR 152 262 0 2051 142 3 3 chr9 8026791 8027094 -109835533 + AluSg SINE Alu 1 303 -7 219 180 0 20 chr9 8027096 8027146 -109835481 + (ATTG)n Simple_repeat Simple_repeat 4 52 0 394 261 9 0 chr9 8027149 8027264 -109835363 + L1MC4 LINE L1 7922 8037 -5 256 220 186 0 chr9 8027311 8027370 -109835257 - MIR3 SINE MIR -48 160 91 223 305 0 0 chr9 8029053 8029112 -109833515 + (CA)n Simple_repeat Simple_repeat 2 60 0 302 298 165 0 chr9 8029127 8029248 -109833379 - L2 LINE L2 -12 3301 3161 1598 203 11 44 chr9 8029376 8029736 -109832891 + MER7A DNA MER2_type 1 346 0 193 377 57 16 chr9 8030131 8030253 -109832374 - L2 LINE L2 -9 3263 3137 566 345 22 9 chr9 8030369 8030601 -109832026 - MIR SINE MIR -10 252 18 1843 175 63 26 chr9 8030659 8031041 -109831586 - MSTD LTR MaLR 0 396 1 258 229 0 0 chr9 8031415 8031485 -109831142 + GA-rich Low_complexity Low_complexity 3 72 0 685 281 54 40 chr9 8032345 8032569 -109830058 - MIR SINE MIR -18 244 18 562 275 39 28 chr9 8032623 8032801 -109829826 + MLT1K LTR MaLR 26 205 -383 451 265 113 63 chr9 8032804 8033042 -109829585 + MLT1K LTR MaLR 331 580 -8 1907 197 14 3 chr9 8033387 8033738 -109828889 - MLT1A1 LTR MaLR 0 365 11 1573 214 27 24 chr9 8033753 8034126 -109828501 + MLT1A2 LTR MaLR 1 374 0 188 200 22 22 chr9 8034336 8034381 -109828246 + L2 LINE L2 3264 3308 -5 2343 167 151 10 chr9 8034404 8034666 -109827961 - MLT2B3 LTR ERVL 0 554 330 203 0 37 0 chr9 8034666 8034693 -109827934 + (GA)n Simple_repeat Simple_repeat 2 29 0 2343 167 151 10 chr9 8034693 8034914 -109827713 - MLT2B3 LTR ERVL -224 330 3 215 227 0 0 chr9 8035010 8035054 -109827573 + (TATG)n Simple_repeat Simple_repeat 1 44 0 507 33 0 0 chr9 8035056 8035117 -109827510 + (TCTA)n Simple_repeat Simple_repeat 4 64 0 420 269 40 86 chr9 8035901 8036076 -109826551 + MER63A DNA MER1_type 44 210 0 23 0 0 0 chr9 8036375 8036398 -109826229 + AT_rich Low_complexity Low_complexity 1 23 0 210 135 19 39 chr9 8037061 8037113 -109825514 + GA-rich Low_complexity Low_complexity 2 52 0 358 252 74 0 chr9 8037302 8037437 -109825190 + L1ME4a LINE L1 5690 5834 -287 1384 230 48 19 chr9 8037510 8037954 -109824673 + L1ME1 LINE L1 5688 6137 -27 303 253 100 65 chr9 8037959 8037988 -109824639 + L1ME4a LINE L1 5879 5906 -215 1811 178 45 17 chr9 8037988 8038343 -109824284 - MLT1A1 LTR MaLR 0 365 1 303 253 100 65 chr9 8038343 8038483 -109824144 + L1ME4a LINE L1 5906 6054 -67 239 276 13 13 chr9 8038531 8038607 -109824020 + (TCTA)n Simple_repeat Simple_repeat 3 78 0 23 54 0 0 chr9 8039075 8039112 -109823515 + AT_rich Low_complexity Low_complexity 1 37 0 203 291 219 40 chr9 8039168 8039319 -109823308 - MIR SINE MIR -84 178 1 2731 29 3 0 chr9 8040599 8040909 -109821718 - AluY SINE Alu 0 311 1 189 226 0 0 chr9 8040948 8041001 -109821626 + (TA)n Simple_repeat Simple_repeat 1 53 0 388 135 135 0 chr9 8043426 8043500 -109819127 - MLT1B LTR MaLR -305 85 2 212 253 0 131 chr9 8043690 8043789 -109818838 - MIR SINE MIR -89 173 88 488 333 64 5 chr9 8045073 8045277 -109817350 - MIR SINE MIR 0 262 47 415 238 25 16 chr9 8046106 8046228 -109816399 - L1ME3A LINE L1 -284 5886 5764 21 0 0 0 chr9 8046591 8046612 -109816015 + AT_rich Low_complexity Low_complexity 1 21 0 321 264 110 12 chr9 8046939 8047126 -109815501 - L1ME3 LINE L1 -289 5873 5665 659 302 74 20 chr9 8047190 8047976 -109814651 - L1ME3 LINE L1 -649 5513 4677 417 293 91 55 chr9 8048042 8048605 -109814022 - L1ME3 LINE L1 -1952 4194 3612 341 278 137 67 chr9 8048692 8048976 -109813651 - L1ME3 LINE L1 -2611 3535 3232 2718 84 16 11 chr9 8049156 8049527 -109813100 + THE1C LTR MaLR 1 373 -2 4666 67 2 2 chr9 8051425 8052026 -109810601 - L1PA7 LINE L1 0 6154 5554 29 47 0 0 chr9 8052033 8052076 -109810551 + AT_rich Low_complexity Low_complexity 1 43 0 789 217 56 28 chr9 8052876 8053056 -109809571 - MER3 DNA MER1_type -24 185 1 181 270 0 0 chr9 8053316 8053353 -109809274 + L2 LINE L2 3256 3292 -21 299 219 37 0 chr9 8053363 8053445 -109809182 - LTR50 LTR ERVL 0 795 711 1141 245 133 28 chr9 8053471 8053969 -109808658 - LTR50 LTR ERVL -142 653 1 3005 201 98 28 chr9 8054100 8055537 -109807090 + L1MB5 LINE L1 4304 5851 -323 182 235 0 0 chr9 8055613 8055647 -109806980 - L2 LINE L2 -6 3266 3233 499 257 151 29 chr9 8055649 8055855 -109806772 - MIR SINE MIR 0 262 32 201 368 15 0 chr9 8056796 8056864 -109805763 + MIR SINE MIR 54 122 -86 24 96 0 0 chr9 8056895 8056968 -109805659 + AT_rich Low_complexity Low_complexity 1 73 0 466 371 0 10 chr9 8056972 8057166 -109805461 - MIR SINE MIR -13 249 58 193 279 29 44 chr9 8057258 8057326 -109805301 + L2 LINE L2 3194 3260 -12 246 213 0 0 chr9 8057911 8057958 -109804669 + (TG)n Simple_repeat Simple_repeat 2 48 0 25 75 0 0 chr9 8057958 8058011 -109804616 + AT_rich Low_complexity Low_complexity 1 53 0 230 288 15 0 chr9 8059284 8059350 -109803277 - MER113 DNA MER1_type? -3 518 452 1698 203 48 6 chr9 8059470 8059805 -109802822 + MLT1A1 LTR MaLR 1 349 -16 215 238 0 0 chr9 8059805 8059847 -109802780 + L2 LINE L2 3228 3269 -3 259 333 26 9 chr9 8060134 8060248 -109802379 - MIR SINE MIR -55 207 92 318 295 109 12 chr9 8060565 8060887 -109801740 - L1MEc LINE L1 -2169 4046 3694 249 303 79 0 chr9 8060918 8060994 -109801633 + L2 LINE L2 3192 3273 -40 209 204 0 20 chr9 8061014 8061063 -109801564 + GA-rich Low_complexity Low_complexity 3 50 0 996 325 88 45 chr9 8061130 8062254 -109800373 - L1MEc LINE L1 -2659 3556 2384 531 220 15 38 chr9 8062451 8062583 -109800044 + FLAM_A SINE Alu 8 136 -6 314 318 136 15 chr9 8062629 8062893 -109799734 - L1MEc LINE L1 -3998 2398 2103 1475 165 44 54 chr9 8063588 8063885 -109798742 - AluJo SINE Alu -13 299 6 234 284 99 45 chr9 8063955 8064198 -109798429 - HAL1 LINE L1 -1151 1356 1101 23 54 0 0 chr9 8064222 8064259 -109798368 + AT_rich Low_complexity Low_complexity 1 37 0 276 310 23 11 chr9 8064994 8065081 -109797546 + MIR SINE MIR 57 144 -64 234 91 0 0 chr9 8066362 8066395 -109796232 + (T)n Simple_repeat Simple_repeat 1 33 0 207 0 0 0 chr9 8066716 8066739 -109795888 + (CA)n Simple_repeat Simple_repeat 2 24 0 438 243 13 185 chr9 8067535 8067835 -109794792 + MIR SINE MIR 4 248 -14 225 178 0 0 chr9 8067980 8068025 -109794602 + (CA)n Simple_repeat Simple_repeat 1 45 0 267 356 30 0 chr9 8069247 8069379 -109793248 + LTR16A LTR ERVL 13 148 -302 253 321 44 50 chr9 8070849 8071070 -109791557 - MIR3 SINE MIR -34 228 14 803 297 38 4 chr9 8071893 8072156 -109790471 + L2 LINE L2 2896 3167 -146 542 286 124 0 chr9 8072177 8072338 -109790289 + MIR SINE MIR 13 193 -69 488 304 0 14 chr9 8072385 8072523 -109790104 + L2 LINE L2 3178 3313 0 2795 163 5 66 chr9 8073743 8074315 -109788312 + MER74A LTR ERVL 1 537 -21 1181 188 39 0 chr9 8074779 8074987 -109787640 + MER58A DNA MER1_type 1 216 -8 2093 113 0 3 chr9 8075365 8075673 -109786954 + AluSq SINE Alu 1 307 0 373 186 134 0 chr9 8075842 8075939 -109786688 + MER20 DNA MER1_type 25 134 -85 6956 155 12 21 chr9 8075948 8077451 -109785176 - Ricksha DNA DNA -13 3238 1711 626 152 16 24 chr9 8077437 8077562 -109785065 - Ricksha DNA DNA -1122 132 9 * 532 224 9 0 chr9 8077581 8077688 -109784939 + MER20 DNA MER1_type 107 214 -5 182 240 135 31 chr9 8077693 8077789 -109784838 + MIR SINE MIR 102 207 -55 21 36 0 0 chr9 8077823 8077851 -109784776 + AT_rich Low_complexity Low_complexity 1 28 0 704 174 52 0 chr9 8078786 8078901 -109783726 - FLAM_A SINE Alu -9 124 4 195 392 13 0 chr9 8081573 8081652 -109780975 + L2 LINE L2 3164 3243 -29 436 266 16 23 chr9 8081813 8081941 -109780686 - MIR SINE MIR -21 241 115 216 202 26 26 chr9 8082024 8082138 -109780489 + (TA)n Simple_repeat Simple_repeat 2 115 0 454 224 0 112 chr9 8082293 8082427 -109780200 - MIR3 SINE MIR -46 162 44 216 217 49 105 chr9 8082617 8082760 -109779867 + L2 LINE L2 2878 3012 -260 525 227 109 0 chr9 8082865 8082975 -109779652 + MER45A DNA AcHobo 57 178 0 243 297 81 0 chr9 8083034 8083108 -109779519 + L2 LINE L2 3136 3215 -57 240 352 16 39 chr9 8083937 8084040 -109778587 - L2 LINE L2 -7 3306 3207 896 223 9 40 chr9 8084040 8084264 -109778363 + MIR SINE MIR 2 218 -44 2121 133 7 0 chr9 8084748 8085057 -109777570 - AluSx SINE Alu 0 312 2 2264 101 0 16 chr9 8085130 8085437 -109777190 - AluSg SINE Alu -8 302 1 2013 137 21 6 chr9 8087120 8087456 -109775171 + L1P4 LINE L1 5393 5733 -432 1463 214 31 26 chr9 8087507 8087891 -109774736 - MER89 LTR ERV1 0 559 174 318 143 32 0 chr9 8087891 8087954 -109774673 - MER89 LTR ERV1 -494 65 1 995 150 56 100 chr9 8087995 8088075 -109774552 + MER33 DNA MER1_type 1 83 -2502 2215 71 0 52 chr9 8088075 8088385 -109774242 + AluY SINE Alu 1 294 -17 995 150 56 100 chr9 8088385 8088643 -109773984 + MER33 DNA MER1_type 83 324 0 413 322 17 0 chr9 8092568 8092683 -109769944 + MIR3 SINE MIR 86 202 -6 28 48 0 0 chr9 8093072 8093114 -109769513 + AT_rich Low_complexity Low_complexity 1 42 0 262 239 103 77 chr9 8094290 8094407 -109768220 - MER20B DNA MER1_type -607 176 57 1991 165 123 8 chr9 8094898 8095280 -109767347 - MSTA LTR MaLR 0 428 3 1648 171 3 58 chr9 8095503 8095681 -109766946 - AluJo SINE Alu -2 310 157 1996 144 17 0 chr9 8095681 8095972 -109766655 - AluSx SINE Alu -16 296 1 1648 171 3 58 chr9 8095972 8096120 -109766507 - AluJo SINE Alu -155 157 2 442 326 47 23 chr9 8096390 8096562 -109766065 - MIR SINE MIR -50 212 37 201 310 42 0 chr9 8096783 8096854 -109765773 - MIR3 SINE MIR -11 197 124 363 277 97 13 chr9 8096855 8097010 -109765617 + MLT1J2 LTR MaLR 1 168 -282 228 86 0 0 chr9 8097031 8097066 -109765561 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 28 29 0 0 chr9 8097150 8097185 -109765442 + AT_rich Low_complexity Low_complexity 1 35 0 820 192 7 0 chr9 8097192 8097338 -109765289 - AluJb SINE Alu -30 282 136 260 243 0 27 chr9 8097352 8097426 -109765201 + MLT1I LTR MaLR 336 407 -2 486 272 97 20 chr9 8098171 8098395 -109764232 + L1M4b LINE L1 11 549 -6306 1121 267 40 14 chr9 8098508 8098928 -109763699 + L1ME1 LINE L1 5731 6161 -5 184 283 321 9 chr9 8099142 8099248 -109763379 - MIR3 SINE MIR -16 192 54 269 294 147 45 chr9 8099826 8100003 -109762624 + MIR SINE MIR 7 201 -61 227 343 95 0 chr9 8100558 8100663 -109761964 + L2 LINE L2 3150 3264 -8 1882 127 25 28 chr9 8102199 8102482 -109760145 - AluY SINE Alu -29 282 1 23 0 0 0 chr9 8104556 8104579 -109758048 + AT_rich Low_complexity Low_complexity 1 23 0 2088 117 7 3 chr9 8104675 8104990 -109757637 - AluSq SINE Alu 0 316 1 22 56 0 0 chr9 8106330 8106366 -109756261 + AT_rich Low_complexity Low_complexity 1 36 0 183 292 167 31 chr9 8106841 8106937 -109755690 - L2 LINE L2 -1 3312 3204 326 367 130 18 chr9 8107590 8107982 -109754645 - L2 LINE L2 0 3272 2837 1238 123 36 5 chr9 8108132 8108351 -109754276 - L1MA8 LINE L1 -5 6286 6061 36705 69 10 8 chr9 8108358 8114453 -109748174 - L1PA3 LINE L1 -3 6152 44 3912 145 9 0 chr9 8114453 8115267 -109747360 - L1MA8 LINE L1 -744 5402 4450 1570 154 0 0 chr9 8115293 8115565 -109747062 - L1MA8 LINE L1 -1800 4346 4075 1142 168 15 0 chr9 8115786 8115989 -109746638 + L1PA15 LINE L1 5939 6144 -21 263 314 128 21 chr9 8116405 8116647 -109745980 - LTR33A LTR ERVL -129 394 127 1064 226 146 45 chr9 8116881 8117258 -109745369 + LTR48 LTR ERV1 1 415 -372 529 153 26 97 chr9 8117261 8117530 -109745097 + MER39 LTR ERV1 544 707 0 232 196 0 0 chr9 8118530 8118576 -109744051 - Charlie8 DNA MER1_type -2162 255 210 225 277 89 50 chr9 8118614 8118715 -109743912 - L2 LINE L2 -283 3030 2926 587 245 0 73 chr9 8118715 8118760 -109743867 - MER5B DNA MER1_type 0 178 131 2564 81 0 0 chr9 8118760 8119069 -109743558 - AluSx SINE Alu -3 309 1 587 245 0 73 chr9 8119069 8119215 -109743412 - MER5B DNA MER1_type -47 131 1 226 287 63 34 chr9 8119798 8120035 -109742592 + L1ME4a LINE L1 5872 6115 -6 282 29 0 0 chr9 8120085 8120120 -109742507 + (TG)n Simple_repeat Simple_repeat 2 36 0 216 0 0 0 chr9 8120178 8120202 -109742425 + (TGAA)n Simple_repeat Simple_repeat 3 26 0 283 230 81 23 chr9 8121054 8121141 -109741486 - MIR3 SINE MIR -50 158 67 1545 166 60 21 chr9 8122226 8122539 -109740088 - MER2 DNA MER2_type 0 345 17 2434 127 27 78 chr9 8122539 8122988 -109739639 - MSTB LTR MaLR 0 426 1 1545 166 60 21 chr9 8122988 8123006 -109739621 - MER2 DNA MER2_type -328 17 1 265 308 0 0 chr9 8123435 8123500 -109739127 + L3b LINE CR1 1276 1340 -243 7996 25 2 2 chr9 8123643 8125361 -109737266 - L1PA3 LINE L1 -1 6154 4437 850 9 0 0 chr9 8125361 8125468 -109737159 + L1PA3 LINE L1 4326 4432 -1714 188 245 0 38 chr9 8125684 8125737 -109736890 - L2 LINE L2 0 3313 3263 198 71 0 0 chr9 8126860 8126888 -109735739 + (TA)n Simple_repeat Simple_repeat 2 29 0 258 222 69 0 chr9 8127777 8127849 -109734778 - MIR SINE MIR -88 174 98 7921 130 16 1 chr9 8128109 8129378 -109733249 + HSMAR2 DNA Mariner 5 1292 -10 380 325 80 51 chr9 8129834 8130185 -109732442 + L2 LINE L2 2535 2895 -419 300 369 0 39 chr9 8130348 8130478 -109732149 + L2 LINE L2 3133 3257 -15 452 243 59 64 chr9 8130492 8130556 -109732071 - MIR SINE MIR -3 259 196 2247 192 12 19 chr9 8130556 8130789 -109731838 - MSTB LTR MaLR -2 424 194 1435 234 3 23 chr9 8130789 8131092 -109731535 - AluJb SINE Alu -15 297 1 2247 192 12 19 chr9 8131092 8131285 -109731342 - MSTB LTR MaLR -232 194 1 452 243 59 64 chr9 8131285 8131441 -109731186 - MIR SINE MIR -66 196 40 213 253 220 22 chr9 8132559 8132650 -109729977 + MIR SINE MIR 36 144 -118 820 136 7 50 chr9 8132918 8133058 -109729569 - AluJo SINE Alu -178 134 1 219 242 16 16 chr9 8134024 8134086 -109728541 + L2 LINE L2 3251 3312 -1 755 263 124 0 chr9 8134193 8134410 -109728217 + MIR SINE MIR 14 257 -5 218 281 158 23 chr9 8134484 8134753 -109727874 - L2 LINE L2 0 3272 2928 780 201 36 82 chr9 8134822 8135041 -109727586 - MER20 DNA MER1_type -10 209 1 183 379 81 0 chr9 8136466 8136590 -109726037 + L3b LINE CR1 1377 1510 -73 186 167 0 0 chr9 8137165 8137201 -109725426 + (TG)n Simple_repeat Simple_repeat 2 37 0 317 266 38 0 chr9 8137793 8137872 -109724755 + L2 LINE L2 3190 3271 -1 402 100 0 0 chr9 8138740 8138800 -109723827 + (TG)n Simple_repeat Simple_repeat 2 61 0 1242 218 157 11 chr9 8139646 8140271 -109722356 - LTR50 LTR ERVL 0 795 5 296 396 132 7 chr9 8140677 8140821 -109721806 + MER91A DNA MER1_type 34 195 -1 194 263 70 0 chr9 8140852 8140909 -109721718 + L2 LINE L2 3006 3066 -206 1286 211 34 4 chr9 8141297 8141726 -109720901 + L1MB8 LINE L1 5137 5578 -596 2020 132 140 8 chr9 8141735 8142113 -109720514 - MSTA LTR MaLR 0 428 1 8968 168 19 31 chr9 8142118 8143783 -109718844 - MSTA-int LTR MaLR -6 1645 1 2250 127 99 10 chr9 8143783 8144176 -109718451 - MSTA LTR MaLR 0 428 1 1469 176 35 6 chr9 8144176 8144495 -109718132 + L1MB8 LINE L1 5583 5910 -268 398 145 0 0 chr9 8144497 8144559 -109718068 - MADE1 DNA Mariner -18 62 1 394 228 11 5 chr9 8144559 8144747 -109717880 + L1MB8 LINE L1 5908 6172 -6 400 349 24 8 chr9 8144969 8145095 -109717532 - L2 LINE L2 0 3272 3145 761 326 143 33 chr9 8145144 8145746 -109716881 - L2 LINE L2 -653 2661 1994 241 174 0 0 chr9 8146060 8146106 -109716521 - L1MB1 LINE L1 -1 6167 6122 2801 110 19 14 chr9 8146108 8146536 -109716091 - L1PA16 LINE L1 0 6166 5737 3100 149 5 13 chr9 8146536 8147331 -109715296 + L1PA16 LINE L1 4949 5737 -429 473 162 108 0 chr9 8147329 8147440 -109715187 - L1MB1 LINE L1 -39 6129 6007 * 841 180 19 0 chr9 8147444 8147605 -109715022 - L1MB1 LINE L1 -236 5932 5769 * 24463 63 5 2 chr9 8147604 8151572 -109711055 - L1PA6 LINE L1 0 6154 2175 3852 131 29 3 chr9 8151572 8152191 -109710436 - MER11B LTR ERVK -601 635 1 4825 167 34 5 chr9 8152191 8153697 -109708930 - L1PA14 LINE L1 -332 6480 4935 5285 167 19 10 chr9 8153699 8155265 -109707362 + L1PB1 LINE L1 4573 6143 -8 11262 199 39 32 chr9 8155280 8159502 -109703125 - L1PA14 LINE L1 -1851 4946 728 279 0 0 0 chr9 8159502 8159533 -109703094 + (CA)n Simple_repeat Simple_repeat 1 31 0 11262 199 39 32 chr9 8159533 8160142 -109702485 - L1PA14 LINE L1 -6069 728 125 2294 272 71 28 chr9 8160147 8161486 -109701141 - L1M4 LINE L1 -2478 3668 2273 27 0 0 0 chr9 8161568 8161595 -109701032 + AT_rich Low_complexity Low_complexity 1 27 0 203 0 37 0 chr9 8162071 8162098 -109700529 + (TTA)n Simple_repeat Simple_repeat 3 30 0 278 267 139 10 chr9 8163395 8163496 -109699131 + LTR16A LTR ERVL 337 450 0 255 176 68 27 chr9 8163497 8163571 -109699056 + MLT1K LTR MaLR 496 572 -16 832 166 21 100 chr9 8163848 8164089 -109698538 - L1MA4A LINE L1 -114 6189 5968 * 1627 51 0 0 chr9 8164066 8164281 -109698346 - L1P2 LINE L1 -644 5510 5296 * 1652 121 18 33 chr9 8164272 8164544 -109698083 + L1M1 LINE L1 5465 5732 -571 * 12292 218 55 22 chr9 8164542 8166596 -109696031 - L1 LINE L1 -842 6006 4023 234 0 0 0 chr9 8166596 8166622 -109696005 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 12292 218 55 22 chr9 8166622 8168505 -109694122 - L1 LINE L1 -2825 4023 1908 3659 202 61 13 chr9 8168513 8169278 -109693349 - L1 LINE L1 -6067 782 2 388 222 5 62 chr9 8170051 8170160 -109692467 - MLT2E LTR ERVL -336 185 36 24 0 0 0 chr9 8170427 8170451 -109692176 + AT_rich Low_complexity Low_complexity 1 24 0 201 268 0 36 chr9 8171353 8171409 -109691218 + GA-rich Low_complexity Low_complexity 4 57 0 437 315 56 29 chr9 8172134 8172687 -109689940 - L1MC4a LINE L1 -846 5445 5297 286 245 170 34 chr9 8172774 8173039 -109689588 - L1MC4a LINE L1 -1773 4373 4073 2429 77 3 3 chr9 8173105 8173416 -109689211 - AluY SINE Alu 0 311 1 321 306 32 64 chr9 8173420 8173639 -109688988 - L1MC4a LINE L1 -2117 4029 3818 723 119 24 8 chr9 8173663 8173789 -109688838 - L1MA5A LINE L1 -4 6293 6166 2716 125 26 9 chr9 8173818 8174273 -109688354 - L1PA16 LINE L1 -9 6157 5695 5483 245 66 25 chr9 8174275 8175040 -109687587 - L1M4 LINE L1 -758 5388 4656 1702 187 0 22 chr9 8175040 8175355 -109687272 - AluJo SINE Alu 0 312 5 5483 245 66 25 chr9 8175355 8176862 -109685765 - L1M4 LINE L1 -1490 4656 2762 287 266 64 0 chr9 8177065 8177159 -109685468 - L1PA12 LINE L1 -5398 2183 2084 914 343 20 51 chr9 8177258 8177891 -109684736 - L1PA12 LINE L1 -6173 1401 788 227 272 52 81 chr9 8177920 8178093 -109684534 - L1MC4a LINE L1 -2342 3804 3637 253 328 55 55 chr9 8178137 8178320 -109684307 - MER5A DNA MER1_type -2 187 5 1504 319 83 25 chr9 8178390 8179207 -109683420 + HAL1 LINE L1 10 874 -1633 185 62 0 31 chr9 8179216 8179248 -109683379 + (TTTTA)n Simple_repeat Simple_repeat 1 31 0 3415 25 0 0 chr9 8179248 8179643 -109682984 - L1PA4 LINE L1 -24 6131 5737 363 0 0 0 chr9 8179640 8179680 -109682947 + L1P2 LINE L1 5618 5657 -497 * 461 238 115 73 chr9 8179676 8180251 -109682376 + HAL1 LINE L1 863 1461 -1046 456 318 40 0 chr9 8180251 8180399 -109682228 + L2 LINE L2 3160 3313 0 381 316 36 14 chr9 8180590 8180729 -109681898 - L3 LINE CR1 -8 1569 1428 2030 130 0 0 chr9 8181203 8181480 -109681147 - AluSq SINE Alu -15 298 22 339 270 132 7 chr9 8181743 8181895 -109680732 + MIR3 SINE MIR 31 201 -7 1997 112 13 16 chr9 8181941 8182244 -109680383 - AluSq SINE Alu -11 302 1 293 306 50 16 chr9 8182643 8182764 -109679863 + MIR3 SINE MIR 8 132 -76 200 231 19 19 chr9 8182921 8182973 -109679654 - L2 LINE L2 -8 3305 3254 415 232 141 68 chr9 8183491 8183668 -109678959 - MIR SINE MIR -24 238 49 4627 88 8 8 chr9 8183921 8184571 -109678056 + L1PA10 LINE L1 5519 6168 0 302 186 253 98 chr9 8184609 8184803 -109677824 + MLT1H LTR MaLR 1 224 -325 2388 151 45 0 chr9 8184842 8185239 -109677388 - MSTB LTR MaLR -11 415 1 35615 93 5 5 chr9 8185448 8191594 -109671033 - L1PA6 LINE L1 -4 6150 11 1986 111 0 14 chr9 8192561 8192840 -109669787 + AluSc SINE Alu 1 275 -34 756 32 0 0 chr9 8192840 8192935 -109669692 + (TC)n Simple_repeat Simple_repeat 2 96 0 2485 56 0 3 chr9 8193023 8193328 -109669299 + AluY SINE Alu 1 304 -7 1745 44 0 31 chr9 8193498 8193726 -109668901 + L1PA5 LINE L1 5928 6148 -6 203 211 0 0 chr9 8194249 8194287 -109668340 - MIR SINE MIR -72 136 99 264 170 0 0 chr9 8194394 8194447 -109668180 + (TATG)n Simple_repeat Simple_repeat 2 54 0 353 292 175 38 chr9 8194787 8195181 -109667446 + MLT1L LTR MaLR 166 613 -2 216 261 0 0 chr9 8195378 8195424 -109667203 - MER5A DNA MER1_type -128 61 16 234 174 0 0 chr9 8195551 8195597 -109667030 + (ATG)n Simple_repeat Simple_repeat 3 48 0 788 277 38 34 chr9 8195626 8195778 -109666849 + MIR SINE MIR 7 162 -100 1899 148 49 25 chr9 8195778 8196144 -109666483 + THE1C LTR MaLR 1 375 0 788 277 38 34 chr9 8196144 8196226 -109666401 + MIR SINE MIR 162 242 -20 323 260 79 0 chr9 8198112 8198239 -109664388 - L1ME4a LINE L1 -50 6071 5935 350 299 216 0 chr9 8199836 8199970 -109662657 - MER5A DNA MER1_type -2 187 25 2750 20 0 0 chr9 8201134 8201437 -109661190 + AluY SINE Alu 1 303 -8 595 324 29 0 chr9 8202854 8203024 -109659603 + MIR3 SINE MIR 19 193 -15 10717 199 26 44 chr9 8203522 8203978 -109658649 - L1PA16 LINE L1 0 6166 5703 2584 108 14 3 chr9 8203978 8204348 -109658279 - THE1C LTR MaLR -1 374 1 10717 199 26 44 chr9 8204348 8204762 -109657865 - L1PA16 LINE L1 -463 5703 5283 3780 94 14 38 chr9 8204762 8205387 -109657240 - L1MA2 LINE L1 0 6304 5695 10717 199 26 44 chr9 8205387 8206235 -109656392 - L1PA16 LINE L1 -883 5283 4421 2316 98 0 16 chr9 8206235 8206551 -109656076 - AluY SINE Alu 0 311 1 10717 199 26 44 chr9 8206551 8208711 -109653916 - L1PA16 LINE L1 -1745 4421 2329 20891 48 4 1 chr9 8208711 8212133 -109650494 - L1PA5 LINE L1 0 6154 2725 10717 199 26 44 chr9 8212133 8212177 -109650450 - L1PA16 LINE L1 -3837 2329 2286 209 179 39 77 chr9 8212248 8212326 -109650301 + A-rich Low_complexity Low_complexity 5 79 0 516 268 0 9 chr9 8214204 8214316 -109648311 + MIR SINE MIR 41 151 -111 210 71 0 0 chr9 8214886 8214914 -109647713 + (TA)n Simple_repeat Simple_repeat 1 28 0 301 263 131 0 chr9 8214917 8215016 -109647611 - MIR SINE MIR -25 237 126 377 265 103 0 chr9 8215352 8215469 -109647158 + Zaphod DNA AcHobo 3900 4028 -3 516 271 17 0 chr9 8215470 8215588 -109647039 - MIR SINE MIR -137 125 6 336 219 93 35 chr9 8215947 8216132 -109646495 + MIR SINE MIR 10 248 -14 580 266 83 16 chr9 8216185 8216377 -109646250 - MIR SINE MIR -1 261 57 1041 243 31 20 chr9 8216383 8216704 -109645923 - MER58B DNA MER1_type 0 341 1 1502 214 57 10 chr9 8217823 8218230 -109644397 + LTR37A LTR ERV1 1 426 0 245 325 105 26 chr9 8219784 8219898 -109642729 - L2 LINE L2 -12 3260 3138 625 355 132 20 chr9 8220450 8221307 -109641320 - L2 LINE L2 -825 2489 1537 417 225 28 84 chr9 8222925 8223067 -109639560 + MIR SINE MIR 8 141 -121 181 246 31 77 chr9 8223249 8223314 -109639313 - L2 LINE L2 -45 3268 3207 783 290 75 36 chr9 8223336 8223695 -109638932 + LTR33 LTR ERVL 149 521 0 397 339 48 16 chr9 8223834 8224020 -109638607 - MIR SINE MIR -70 192 1 493 276 6 41 chr9 8225098 8225268 -109637359 + MIR SINE MIR 29 191 -69 197 367 41 31 chr9 8227028 8227126 -109635501 - L2 LINE L2 -32 3240 3142 1140 189 42 0 chr9 8227394 8227654 -109634973 + L1MA4 LINE L1 6018 6288 -12 767 297 64 55 chr9 8227930 8228368 -109634259 - L1MEd LINE L1 -5613 506 65 503 329 70 51 chr9 8228526 8228882 -109633745 + L2 LINE L2 2939 3301 -12 537 258 22 39 chr9 8229482 8229660 -109632967 + MER5B DNA MER1_type 2 176 -2 291 337 0 0 chr9 8229737 8229829 -109632798 + L2 LINE L2 3180 3271 -1 21 36 0 0 chr9 8230715 8230743 -109631884 + AT_rich Low_complexity Low_complexity 1 28 0 369 43 0 0 chr9 8230949 8230996 -109631631 + (TAGA)n Simple_repeat Simple_repeat 3 49 0 5100 171 35 24 chr9 8232462 8233836 -109628791 - L1MA9 LINE L1 0 6312 4927 2742 136 28 29 chr9 8233826 8234457 -109628170 - L1P4 LINE L1 -425 5740 5113 * 1154 193 75 55 chr9 8234456 8234908 -109627719 - L1MA9 LINE L1 -2757 3389 2929 * 859 254 39 21 chr9 8234959 8235238 -109627389 + L1MA9 LINE L1 5987 6270 -42 4029 146 84 40 chr9 8235620 8236509 -109626118 - L1PB4 LINE L1 0 6156 5229 6154 147 17 4 chr9 8236509 8237527 -109625100 + Ricksha_c DNA DNA 906 1936 -110 336 282 0 48 chr9 8237654 8237692 -109624935 + L1MC4 LINE L1 6608 6646 -1396 333 0 0 0 chr9 8237692 8237729 -109624898 + (TC)n Simple_repeat Simple_repeat 2 38 0 369 321 0 0 chr9 8237729 8237813 -109624814 - L1MC4 LINE L1 -1341 6701 6618 21 36 0 0 chr9 8237931 8237959 -109624668 + AT_rich Low_complexity Low_complexity 1 28 0 2025 124 0 7 chr9 8238062 8238360 -109624267 + AluSx SINE Alu 1 296 -16 43 56 0 0 chr9 8238498 8238569 -109624058 + AT_rich Low_complexity Low_complexity 1 71 0 1783 117 8 4 chr9 8240246 8240511 -109622116 - AluSc SINE Alu -9 300 35 1100 266 100 35 chr9 8240642 8241154 -109621473 - MLT1H LTR MaLR 0 549 5 584 276 136 0 chr9 8241278 8241499 -109621128 + MIR SINE MIR 12 262 0 324 266 120 20 chr9 8242655 8242789 -109619838 - MIR SINE MIR -62 146 38 279 0 0 0 chr9 8243000 8243031 -109619596 + (CA)n Simple_repeat Simple_repeat 1 31 0 1997 94 59 0 chr9 8244235 8244521 -109618106 - AluSg SINE Alu -5 305 3 386 304 92 16 chr9 8245430 8245614 -109617013 + MIR SINE MIR 54 251 -11 272 323 51 109 chr9 8246535 8246866 -109615761 - L2 LINE L2 0 3272 2961 227 323 240 15 chr9 8247144 8247481 -109615146 - L2 LINE L2 -925 2389 1977 753 272 109 32 chr9 8248154 8248503 -109614124 - MLT1H LTR MaLR -147 408 40 305 277 0 0 chr9 8248583 8248648 -109613979 + MIR SINE MIR 3 67 -195 193 266 16 47 chr9 8248704 8248768 -109613859 + MIR SINE MIR 201 262 0 501 242 99 6 chr9 8249020 8249181 -109613446 - L1ME LINE L1 -439 5682 5507 483 18 0 0 chr9 8250993 8251049 -109611578 + (TA)n Simple_repeat Simple_repeat 2 57 0 2020 186 21 8 chr9 8251127 8251508 -109611119 + MLT1B LTR MaLR 3 388 -2 24 32 0 0 chr9 8251570 8251601 -109611026 + AT_rich Low_complexity Low_complexity 1 31 0 287 210 32 0 chr9 8251757 8251819 -109610808 - MLT1I LTR MaLR 0 409 346 497 292 14 14 chr9 8252110 8252254 -109610373 - MLT1I LTR MaLR -207 202 59 1982 309 16 48 chr9 8253125 8253872 -109608755 + L1PA15 LINE L1 1 723 -6064 13995 229 27 18 chr9 8253987 8256492 -109606135 + L1PA15 LINE L1 1324 3804 -3012 2479 123 13 11 chr9 8256492 8256866 -109605761 + THE1C LTR MaLR 1 375 0 13995 229 27 18 chr9 8256866 8259813 -109602814 + L1PA15 LINE L1 3804 6815 -1 216 86 0 0 chr9 8260955 8260990 -109601637 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr9 8261059 8261080 -109601547 + AT_rich Low_complexity Low_complexity 1 21 0 250 200 0 50 chr9 8261556 8261616 -109601011 + L2 LINE L2 3255 3311 -2 22 56 0 0 chr9 8261950 8261986 -109600641 + AT_rich Low_complexity Low_complexity 1 36 0 264 222 0 0 chr9 8262575 8262647 -109599980 + (TG)n Simple_repeat Simple_repeat 1 72 0 224 275 62 118 chr9 8262968 8263167 -109599460 - MIR3 SINE MIR -5 203 15 333 0 0 0 chr9 8263167 8263204 -109599423 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 224 275 62 118 chr9 8263204 8263215 -109599412 - MIR3 SINE MIR -193 15 5 340 230 190 10 chr9 8263341 8263441 -109599186 - L2 LINE L2 -1 3312 3195 1996 134 0 0 chr9 8265207 8265513 -109597114 - AluSc SINE Alu -3 306 1 501 270 122 26 chr9 8265605 8265997 -109596630 - MLT1H1 LTR MaLR 0 555 64 549 328 6 22 chr9 8267239 8267419 -109595208 - MIR SINE MIR -32 230 54 1775 229 28 21 chr9 8267459 8267892 -109594735 - L1ME1 LINE L1 -9 6157 5722 2408 67 0 0 chr9 8268112 8268412 -109594215 - AluY SINE Alu -11 300 1 191 265 61 0 chr9 8268436 8268485 -109594142 + L2 LINE L2 3221 3272 0 409 326 12 22 chr9 8269049 8269229 -109593398 + MIR SINE MIR 30 206 -41 2267 81 7 3 chr9 8270233 8270542 -109592085 + AluY SINE Alu 1 310 -1 341 260 81 18 chr9 8273753 8273934 -109588693 + L1ME LINE L1 515 750 -5384 276 279 93 8 chr9 8274115 8274244 -109588383 + L1ME LINE L1 267 406 -5664 625 260 47 30 chr9 8274367 8274792 -109587835 + L1ME LINE L1 463 900 -5170 * 3734 236 62 19 chr9 8274769 8275612 -109587015 + L1ME LINE L1 2549 3458 -2622 1932 134 0 0 chr9 8275612 8275902 -109586725 - AluSx SINE Alu -20 292 3 3734 236 62 19 chr9 8275902 8276245 -109586382 + L1ME LINE L1 3458 3785 -2295 915 159 19 0 chr9 8278007 8278164 -109584463 - AluJb SINE Alu -15 297 138 653 270 61 22 chr9 8279472 8279702 -109582925 + MIR SINE MIR 8 246 -16 180 158 40 13 chr9 8281434 8281510 -109581117 + (TCTCTG)n Simple_repeat Simple_repeat 3 80 0 251 181 36 24 chr9 8281527 8281693 -109580934 + (TCTCTG)n Simple_repeat Simple_repeat 4 171 0 435 156 21 54 chr9 8281710 8281896 -109580731 + (TCTCTG)n Simple_repeat Simple_repeat 1 180 0 996 145 0 12 chr9 8282362 8282534 -109580093 - AluSp SINE Alu -10 303 134 2260 95 0 3 chr9 8282534 8282838 -109579789 - AluY SINE Alu -8 303 1 262 282 51 0 chr9 8283758 8283836 -109578791 + MER5A DNA MER1_type 4 85 -104 232 277 9 9 chr9 8283914 8284026 -109578601 + (CA)n Simple_repeat Simple_repeat 2 113 0 1284 189 0 26 chr9 8284343 8284633 -109577994 + AluJo SINE Alu 25 307 0 246 302 148 16 chr9 8284771 8284960 -109577667 - MIR SINE MIR -26 236 23 2633 107 8 8 chr9 8286546 8286919 -109575708 - THE1C LTR MaLR 0 375 3 279 311 47 0 chr9 8288141 8288255 -109574372 + MIR SINE MIR 30 147 -70 247 216 98 49 chr9 8288831 8288933 -109573694 - LTR16C LTR ERVL 0 491 385 208 195 0 46 chr9 8289625 8289712 -109572915 + (CACCC)n Simple_repeat Simple_repeat 3 85 0 2098 127 0 10 chr9 8290803 8291111 -109571516 - AluSx SINE Alu -6 306 2 1273 263 54 28 chr9 8291668 8292129 -109570498 - MLT1E2 LTR MaLR -7 619 147 200 271 83 52 chr9 8294958 8295054 -109567573 + MIR3 SINE MIR 78 176 -32 367 293 18 42 chr9 8296491 8296658 -109565969 - MER58B DNA MER1_type -2 339 177 1073 175 60 19 chr9 8296750 8297019 -109565608 - THE1C LTR MaLR 0 375 96 2119 59 0 0 chr9 8297122 8297378 -109565249 - L1PA5 LINE L1 -1 6153 5898 197 190 103 17 chr9 8298091 8298149 -109564478 - L2 LINE L2 -23 3249 3187 * 297 279 58 0 chr9 8298129 8298233 -109564394 - MIR SINE MIR -124 138 29 216 184 0 0 chr9 8298922 8298960 -109563667 + (CA)n Simple_repeat Simple_repeat 1 38 0 282 243 0 0 chr9 8299092 8299166 -109563461 + G-rich Low_complexity Low_complexity 1 74 0 633 276 92 0 chr9 8301510 8301749 -109560878 - Charlie5 DNA MER1_type 0 2624 2364 256 288 14 0 chr9 8301736 8301809 -109560818 - Charlie5 DNA MER1_type -2536 76 3 * 215 286 83 7 chr9 8302335 8302429 -109560198 + MIR SINE MIR 45 144 -64 564 214 17 0 chr9 8302637 8302810 -109559817 + CT-rich Low_complexity Low_complexity 1 176 0 1480 94 44 5 chr9 8303696 8303899 -109558728 + AluSg/x SINE Alu 83 293 -17 259 301 54 0 chr9 8304645 8304738 -109557889 + MIR3 SINE MIR 92 189 -19 298 224 0 0 chr9 8304871 8304929 -109557698 + L2 LINE L2 3215 3272 0 1696 149 55 3 chr9 8304999 8305288 -109557339 - AluSx SINE Alu -8 304 1 421 345 40 0 chr9 8306231 8306405 -109556222 + MIR SINE MIR 50 230 -32 1165 252 55 3 chr9 8307000 8307325 -109555302 + MER7A DNA MER2_type 1 340 -6 298 283 11 22 chr9 8307711 8307803 -109554824 + MIR SINE MIR 87 177 -85 188 333 0 0 chr9 8307859 8307907 -109554720 - MIR SINE MIR -106 156 109 233 209 75 0 chr9 8308984 8309051 -109553576 - MLT1J LTR MaLR -341 170 99 181 296 28 14 chr9 8310832 8310903 -109551724 + L2 LINE L2 2994 3065 -248 2352 60 0 0 chr9 8311137 8311448 -109551179 - AluY SINE Alu 0 311 1 817 164 0 29 chr9 8311448 8311588 -109551039 - AluJo SINE Alu -176 136 1 1912 97 0 0 chr9 8311637 8311884 -109550743 - AluSx SINE Alu -19 293 47 186 200 20 20 chr9 8312512 8312562 -109550065 - MIR SINE MIR -57 151 102 390 303 70 32 chr9 8312962 8313147 -109549480 + MIR SINE MIR 41 232 -30 401 330 62 17 chr9 8313413 8313704 -109548923 - L1MEc LINE L1 -6028 368 65 627 253 220 10 chr9 8315571 8315930 -109546697 - MLT1C LTR MaLR -47 420 1 194 126 11 69 chr9 8316639 8316726 -109545901 + (GGA)n Simple_repeat Simple_repeat 2 83 0 351 297 109 0 chr9 8318908 8319046 -109543581 - MIR SINE MIR -19 243 91 23 0 0 0 chr9 8320741 8320764 -109541863 + GC_rich Low_complexity Low_complexity 1 23 0 326 251 115 20 chr9 8322276 8322394 -109540233 + MIR SINE MIR 33 162 -46 2122 78 58 3 chr9 8322548 8322843 -109539784 - AluY SINE Alu 0 311 1 2299 258 92 8 chr9 8323734 8324486 -109538141 - MER21B LTR ERV1 0 863 49 276 294 0 0 chr9 8324497 8324565 -109538062 - MER21B LTR ERV1 -777 86 19 285 244 37 0 chr9 8324678 8324760 -109537867 + MLT1E2 LTR MaLR 124 208 -418 248 259 0 0 chr9 8325082 8325140 -109537487 + MARNA DNA Mariner 436 493 -93 1883 184 47 19 chr9 8326183 8326548 -109536079 + THE1C LTR MaLR 1 375 0 495 244 154 5 chr9 8327261 8327462 -109535165 - MER113 DNA MER1_type? -230 291 61 279 363 9 9 chr9 8327489 8327602 -109535025 - L3 LINE CR1 -48 1529 1417 392 330 84 0 chr9 8328318 8328497 -109534130 - MIR SINE MIR -26 236 43 22 0 0 0 chr9 8329180 8329202 -109533425 + GC_rich Low_complexity Low_complexity 1 22 0 206 295 33 0 chr9 8330833 8330894 -109531733 - MER91B DNA MER1_type -127 63 1 569 209 157 5 chr9 8330901 8331111 -109531516 - MLT1D LTR MaLR -157 348 107 372 277 108 19 chr9 8331899 8332112 -109530515 - LTR16A LTR ERVL -17 433 202 255 168 76 0 chr9 8332186 8332305 -109530322 + (CAGGA)n Simple_repeat Simple_repeat 3 130 0 242 272 48 24 chr9 8332305 8332430 -109530197 + (CGGGA)n Simple_repeat Simple_repeat 3 130 0 1732 231 86 25 chr9 8335834 8336324 -109526303 - MLT2B1 LTR ERVL 0 520 1 2659 104 8 29 chr9 8336896 8337279 -109525348 + THE1C LTR MaLR 1 375 0 441 104 42 52 chr9 8339014 8339110 -109523517 - L1MA8 LINE L1 -1 6290 6196 234 245 28 56 chr9 8342916 8343059 -109519568 + GA-rich Low_complexity Low_complexity 3 141 0 190 222 0 37 chr9 8345183 8345237 -109517390 - MIR SINE MIR -64 144 93 201 244 0 0 chr9 8345412 8345457 -109517170 + (TGAG)n Simple_repeat Simple_repeat 4 48 0 230 198 19 36 chr9 8346468 8346537 -109516090 - MIR SINE MIR -61 147 98 3164 200 61 7 chr9 8351139 8351898 -109510729 + L1 LINE L1 3240 4039 -2107 259 119 0 0 chr9 8351901 8351943 -109510684 + L1 LINE L1 3998 4039 -2107 259 119 0 0 chr9 8351946 8351988 -109510639 + L1 LINE L1 3998 4039 -2107 259 119 0 0 chr9 8351991 8352033 -109510594 + L1 LINE L1 3998 4039 -2107 243 143 0 0 chr9 8352084 8352126 -109510501 + L1 LINE L1 3998 4039 -2107 1697 160 53 53 chr9 8352129 8352504 -109510123 + L1 LINE L1 3998 4372 -1774 2207 122 7 0 chr9 8352505 8352799 -109509828 + AluSq SINE Alu 1 296 -17 381 259 29 43 chr9 8352803 8352942 -109509685 - L2 LINE L2 -256 3057 2921 5019 286 39 17 chr9 8353067 8355166 -109507461 - L1P LINE L1 -2537 3609 1466 430 335 70 44 chr9 8355655 8355998 -109506629 + MLT1J2 LTR MaLR 99 450 0 289 283 10 10 chr9 8356400 8356427 -109506200 + L3 LINE CR1 647 673 -904 2543 196 21 44 chr9 8356427 8356994 -109505633 - MLT2B3 LTR ERVL 0 554 1 289 283 10 10 chr9 8356994 8357065 -109505562 + L3 LINE CR1 672 745 -832 2043 118 48 3 chr9 8357421 8357710 -109504917 - AluSc SINE Alu -7 302 1 207 139 23 23 chr9 8357869 8357912 -109504715 + A-rich Low_complexity Low_complexity 2 44 0 229 373 117 12 chr9 8358199 8358446 -109504181 + L3 LINE CR1 1251 1523 -54 1860 191 0 20 chr9 8358463 8358813 -109503814 + MLT1A1 LTR MaLR 21 363 -2 222 217 29 43 chr9 8358932 8359001 -109503626 + CT-rich Low_complexity Low_complexity 4 71 0 337 393 17 6 chr9 8359001 8359179 -109503448 - L2 LINE L2 -1 3312 3133 360 246 129 23 chr9 8359727 8359947 -109502680 - MLT1K LTR MaLR -2 613 360 602 224 76 59 chr9 8359968 8360205 -109502422 - MIR SINE MIR -14 248 8 207 345 154 34 chr9 8362341 8362587 -109500040 + L2 LINE L2 1521 1736 -1578 1183 193 28 0 chr9 8362587 8362799 -109499828 - MER20 DNA MER1_type -1 218 1 207 345 154 34 chr9 8362799 8363532 -109499095 + L2 LINE L2 1736 2618 -696 1019 247 17 0 chr9 8364151 8364390 -109498237 - MIR SINE MIR 0 262 20 23 33 0 0 chr9 8364882 8364912 -109497715 + AT_rich Low_complexity Low_complexity 1 30 0 836 84 0 0 chr9 8365144 8365251 -109497376 + AluY SINE Alu 199 305 -6 352 234 117 7 chr9 8365292 8365437 -109497190 + L1ME4a LINE L1 5961 6121 0 523 255 50 32 chr9 8365589 8365787 -109496840 + MIR SINE MIR 18 220 -42 188 346 90 32 chr9 8366323 8366702 -109495925 - L2 LINE L2 -201 3071 2670 446 311 28 17 chr9 8366832 8367012 -109495615 - MIR SINE MIR 0 262 81 497 173 0 10 chr9 8367408 8367512 -109495115 + GA-rich Low_complexity Low_complexity 2 104 0 297 128 0 0 chr9 8367619 8367666 -109494961 + (T)n Simple_repeat Simple_repeat 1 47 0 244 247 53 94 chr9 8369391 8369561 -109493066 + LTR67 LTR ERVL 381 543 -14 214 239 15 15 chr9 8369667 8369734 -109492893 + (TA)n Simple_repeat Simple_repeat 2 68 0 204 179 0 0 chr9 8369851 8369890 -109492737 + T-rich Low_complexity Low_complexity 1 39 0 25 0 0 0 chr9 8370376 8370401 -109492226 + AT_rich Low_complexity Low_complexity 1 25 0 342 263 175 0 chr9 8370619 8370756 -109491871 - MIR SINE MIR -2 260 100 205 158 26 0 chr9 8371489 8371527 -109491100 + L2 LINE L2 3264 3302 -11 881 231 54 0 chr9 8374001 8374187 -109488440 + Tigger7 DNA MER2_type 7 202 -2285 717 278 27 0 chr9 8374402 8374625 -109488002 + Tigger7 DNA MER2_type 191 419 -314 627 149 90 70 chr9 8375384 8375585 -109487042 - MLT1C LTR MaLR -231 236 32 248 258 0 0 chr9 8376516 8376578 -109486049 - MER2 DNA MER2_type -1 344 283 239 290 0 0 chr9 8376554 8376623 -109486004 - MER8 DNA MER2_type -60 179 111 * 426 242 121 0 chr9 8376736 8376885 -109485742 + MLT1F1 LTR MaLR 1 167 -223 480 264 142 44 chr9 8377715 8378010 -109484617 + MLT1F1 LTR MaLR 244 567 0 651 199 20 5 chr9 8378398 8378563 -109484064 - MLT1A1 LTR MaLR -175 190 19 276 207 198 0 chr9 8378890 8379001 -109483626 + MLT1K LTR MaLR 431 563 -25 737 279 63 11 chr9 8380131 8380608 -109482019 - MER77 LTR ERV1 -4 601 58 234 176 0 39 chr9 8382349 8382400 -109480227 - L2 LINE L2 -5 3267 3219 2206 246 46 26 chr9 8383407 8383539 -109479088 + MER67C LTR ERV1 1 129 -581 2228 96 13 3 chr9 8383539 8383841 -109478786 - AluSc SINE Alu -4 305 1 2206 246 46 26 chr9 8383841 8384404 -109478223 + MER67C LTR ERV1 129 710 0 2166 101 3 3 chr9 8385010 8385296 -109477331 + AluSg1 SINE Alu 1 286 -23 2068 111 47 65 chr9 8385475 8385694 -109476933 + MER51A LTR ERV1 1 222 -412 238 67 44 0 chr9 8385694 8385739 -109476888 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 2130 125 0 20 chr9 8385742 8386046 -109476581 - AluSx SINE Alu -14 298 1 2068 111 47 65 chr9 8386046 8386372 -109476255 + MER51A LTR ERV1 224 634 0 2348 236 51 43 chr9 8386763 8387515 -109475112 - L1M4 LINE L1 -1778 4368 3608 1366 171 98 29 chr9 8387515 8387790 -109474837 - AluJb SINE Alu -18 294 1 2348 236 51 43 chr9 8387790 8387801 -109474826 - L1M4 LINE L1 -2538 3608 3599 701 244 80 20 chr9 8387796 8387997 -109474630 - L1MD2 LINE L1 -16 6343 6131 * 255 197 237 0 chr9 8388239 8388315 -109474312 - L1MD2 LINE L1 -543 5699 5606 453 247 20 27 chr9 8388362 8388508 -109474119 - L1M4 LINE L1 -2587 3559 3415 257 304 47 70 chr9 8388743 8389000 -109473627 + MLT1-int LTR MaLR 1114 1364 -7 5768 18 0 0 chr9 8389206 8389883 -109472744 - L1PA3 LINE L1 -16 6139 5463 * 7184 36 18 0 chr9 8389880 8390863 -109471764 + L1PA4 LINE L1 5149 6147 -8 2276 67 7 24 chr9 8391003 8391301 -109471326 + AluY SINE Alu 1 293 -18 201 74 0 0 chr9 8391365 8391392 -109471235 + (TA)n Simple_repeat Simple_repeat 1 27 0 232 276 52 22 chr9 8391470 8391604 -109471023 - L1MC/D LINE L1 -1930 5878 5741 5488 72 3 0 chr9 8391760 8392468 -109470159 - L1PA7 LINE L1 -3 6151 5442 4834 156 41 1 chr9 8393171 8394172 -109468455 - L1PA16 LINE L1 -9 6157 5116 180 0 0 0 chr9 8394374 8394394 -109468233 + (T)n Simple_repeat Simple_repeat 1 20 0 369 316 20 94 chr9 8395554 8395798 -109466829 - L2 LINE L2 -3 3269 3044 421 262 121 7 chr9 8397201 8397342 -109465285 + MER5A DNA MER1_type 33 189 0 1999 133 0 3 chr9 8397843 8398129 -109464498 - AluJb SINE Alu -19 293 9 242 359 23 53 chr9 8400112 8400243 -109462384 + MIR SINE MIR 19 145 -63 191 326 102 0 chr9 8400445 8400543 -109462084 + MIR SINE MIR 152 259 -3 1788 77 151 4 chr9 8402037 8402296 -109460331 - AluY SINE Alu -3 298 2 301 257 38 0 chr9 8402612 8402717 -109459910 + MER103 DNA DNA 1 109 -57 23 0 0 0 chr9 8404190 8404213 -109458414 + AT_rich Low_complexity Low_complexity 1 23 0 295 284 40 14 chr9 8406333 8406407 -109456220 + MIR SINE MIR 32 107 -155 254 308 67 29 chr9 8407072 8407176 -109455451 - L2 LINE L2 -24 3289 3182 707 309 114 63 chr9 8408462 8409423 -109453204 + L2 LINE L2 2297 3313 0 2024 149 0 10 chr9 8409985 8410293 -109452334 - AluSx SINE Alu -3 309 5 24 0 0 0 chr9 8410507 8410531 -109452096 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr9 8410840 8410871 -109451756 + AT_rich Low_complexity Low_complexity 1 31 0 1369 189 70 83 chr9 8411262 8411744 -109450883 - LTR8 LTR ERV1 -215 476 1 2112 111 10 0 chr9 8411830 8412127 -109450500 - AluSq SINE Alu -12 301 2 1026 149 28 11 chr9 8413128 8413309 -109449318 + MER5A DNA MER1_type 6 189 0 468 147 138 0 chr9 8413364 8413473 -109449154 + MER53 DNA DNA 3 126 -63 1865 153 73 14 chr9 8415372 8415726 -109446901 + THE1C LTR MaLR 1 375 0 22 0 0 0 chr9 8418433 8418455 -109444172 + AT_rich Low_complexity Low_complexity 1 22 0 5767 51 2 8 chr9 8418559 8419388 -109443239 + L1P LINE L1 2 953 -5193 240 267 120 0 chr9 8419514 8419589 -109443038 + MLT1J LTR MaLR 286 369 -142 360 350 87 15 chr9 8419709 8419915 -109442712 - MIR SINE MIR -41 221 1 519 294 120 45 chr9 8420773 8421174 -109441453 - MLT1H LTR MaLR 0 549 119 1492 312 57 40 chr9 8421266 8421972 -109440655 + L3 LINE CR1 761 1478 -99 182 176 0 0 chr9 8421993 8422027 -109440600 + MER5B DNA MER1_type 1 34 -144 327 49 0 0 chr9 8422239 8422280 -109440347 + (CA)n Simple_repeat Simple_repeat 2 42 0 181 267 109 30 chr9 8422333 8422434 -109440193 + L3 LINE CR1 1218 1326 -251 33 80 0 0 chr9 8423129 8423204 -109439423 + AT_rich Low_complexity Low_complexity 1 75 0 185 283 43 0 chr9 8423413 8423459 -109439168 + L2 LINE L2 1835 1882 -1432 210 241 60 60 chr9 8424353 8424436 -109438191 - MIR SINE MIR -56 206 124 1481 162 19 4 chr9 8424442 8424708 -109437919 + MLT1A1 LTR MaLR 1 270 -95 1157 170 75 0 chr9 8424848 8425089 -109437538 + L1MC3 LINE L1 7494 7752 -33 3203 266 44 20 chr9 8426127 8427544 -109435083 - L1M4 LINE L1 -1483 4899 3449 4040 168 29 20 chr9 8427721 8428069 -109434558 - L1MB5 LINE L1 0 6174 5830 1887 150 0 32 chr9 8428069 8428383 -109434244 - AluJb SINE Alu -8 304 1 4040 168 29 20 chr9 8428383 8428876 -109433751 - L1MB5 LINE L1 -344 5830 5326 1751 168 31 17 chr9 8428889 8429181 -109433446 - AluJb SINE Alu -16 296 1 1890 167 0 16 chr9 8429187 8429499 -109433128 - AluJo SINE Alu -5 307 1 1658 196 28 0 chr9 8429504 8429790 -109432837 - AluJb SINE Alu -18 294 1 821 236 41 20 chr9 8429847 8430190 -109432437 - L1M4 LINE L1 -4071 2313 1964 2322 111 17 37 chr9 8430374 8430778 -109431849 - HERVK9 LTR ERVK -5520 396 1 3189 125 2 6 chr9 8430778 8431275 -109431352 - MER9 LTR ERVK 0 511 17 7558 157 18 8 chr9 8431432 8432817 -109429810 + Tigger1 DNA MER2_type 1 1399 -1019 254 179 155 12 chr9 8432920 8433004 -109429623 - MER33 DNA MER1_type -224 100 5 200 309 49 81 chr9 8434038 8434161 -109428466 + L2 LINE L2 3187 3305 -8 407 330 59 39 chr9 8435632 8435835 -109426792 - MIR SINE MIR -7 255 49 320 284 60 49 chr9 8436020 8436203 -109426424 + MLT1J LTR MaLR 6 190 -321 221 147 0 0 chr9 8436305 8436339 -109426288 + (GA)n Simple_repeat Simple_repeat 2 35 0 224 182 0 18 chr9 8436340 8436395 -109426232 + GA-rich Low_complexity Low_complexity 1 54 0 1382 229 93 26 chr9 8436401 8436858 -109425769 - MLT2B1 LTR ERVL -20 534 1 265 302 63 32 chr9 8436864 8436990 -109425637 + MLT1J LTR MaLR 382 511 0 209 365 81 0 chr9 8437220 8437294 -109425333 + L2 LINE L2 2970 3049 -223 310 374 36 12 chr9 8437735 8437901 -109424726 - L1ME3A LINE L1 -273 5897 5728 243 211 33 0 chr9 8437977 8438067 -109424560 + (TA)n Simple_repeat Simple_repeat 1 93 0 500 304 87 42 chr9 8438090 8438445 -109424182 - L1M3 LINE L1 -520 5642 5272 2076 259 10 19 chr9 8439557 8440071 -109422556 - MLT1F LTR MaLR -6 536 28 2398 177 18 11 chr9 8440421 8440861 -109421766 + L1PA13 LINE L1 2 444 -6343 368 95 16 32 chr9 8440961 8441024 -109421603 - MER30 DNA MER1_type -162 68 7 3993 118 3 0 chr9 8441030 8441608 -109421019 + Tigger1 DNA MER2_type 1461 2040 -378 288 243 0 0 chr9 8442497 8442571 -109420056 + (CATATA)n Simple_repeat Simple_repeat 4 77 0 268 338 110 15 chr9 8442727 8442863 -109419764 - MIR SINE MIR -109 153 5 380 145 0 0 chr9 8443187 8443249 -109419378 + MSTB1 LTR MaLR 344 405 -27 471 281 99 18 chr9 8443440 8443611 -109419016 - L2 LINE L2 -40 3273 3089 863 183 91 6 chr9 8443613 8443788 -109418839 + MER58A DNA MER1_type 25 214 -10 483 273 107 0 chr9 8443797 8443947 -109418680 - L2 LINE L2 -504 2810 2645 1297 86 15 40 chr9 8443947 8444145 -109418482 - MER30 DNA MER1_type -37 193 1 840 321 11 4 chr9 8444265 8444542 -109418085 - L2 LINE L2 -861 2453 2175 216 0 0 0 chr9 8444544 8444568 -109418059 + (T)n Simple_repeat Simple_repeat 1 24 0 189 216 0 0 chr9 8444869 8444906 -109417721 - MIR SINE MIR -3 259 223 5561 65 39 0 chr9 8445251 8445988 -109416639 + L1PA7 LINE L1 5386 6151 -3 265 276 52 22 chr9 8446144 8446278 -109416349 + L1MC/D LINE L1 5741 5878 -1930 201 74 0 0 chr9 8446356 8446383 -109416244 + (TA)n Simple_repeat Simple_repeat 1 27 0 1866 62 8 29 chr9 8446447 8446691 -109415936 - AluY SINE Alu -18 293 55 7073 181 13 21 chr9 8446791 8448987 -109413640 + L1PA13 LINE L1 3944 6145 -18 779 251 0 26 chr9 8449024 8449215 -109413412 + AluJb SINE Alu 127 312 0 645 274 88 18 chr9 8449502 8449842 -109412785 + L1ME3A LINE L1 4037 4400 -1746 1100 278 168 10 chr9 8449852 8450435 -109412192 + L1ME3A LINE L1 4573 5247 -899 2305 246 71 24 chr9 8450508 8451062 -109411565 + L1ME3A LINE L1 5274 5883 -287 782 230 99 5 chr9 8451062 8451253 -109411374 - MER63A DNA MER1_type -1 209 1 2305 246 71 24 chr9 8451253 8451547 -109411080 + L1ME3A LINE L1 5883 6162 -8 905 191 12 0 chr9 8451602 8451764 -109410863 - MER58B DNA MER1_type -5 336 173 240 289 45 58 chr9 8451833 8451989 -109410638 - MIR3 SINE MIR -25 183 30 890 170 105 0 chr9 8452957 8453128 -109409499 - MER5A DNA MER1_type 0 189 1 616 174 232 7 chr9 8453392 8453530 -109409097 + MER45A DNA AcHobo 1 169 -9 342 275 0 0 chr9 8453556 8453636 -109408991 + L2 LINE L2 3234 3313 0 395 330 16 68 chr9 8453692 8453883 -109408744 - MER5A DNA MER1_type -2 187 7 180 378 14 0 chr9 8453981 8454055 -109408572 + L2 LINE L2 2980 3054 -218 872 359 87 11 chr9 8454125 8454654 -109407973 + MLT1K LTR MaLR 17 585 -3 219 277 117 51 chr9 8455402 8455539 -109407088 - L2 LINE L2 -2 3311 3166 3382 133 57 25 chr9 8456003 8456636 -109405991 + MER39B LTR ERV1 1 653 0 23 54 0 0 chr9 8457467 8457504 -109405123 + AT_rich Low_complexity Low_complexity 1 37 0 592 191 0 116 chr9 8457807 8457890 -109404737 - L1MA9 LINE L1 -32 6280 6231 2232 90 0 0 chr9 8457890 8458204 -109404423 + AluSc SINE Alu 3 316 0 592 191 0 116 chr9 8458204 8458318 -109404309 - L1MA9 LINE L1 -81 6231 6105 583 76 0 0 chr9 8458688 8458818 -109403809 - AluSg/x SINE Alu 0 333 204 268 250 0 0 chr9 8459750 8459810 -109402817 + Charlie8 DNA MER1_type 1357 1416 -1001 1879 181 25 27 chr9 8460146 8460554 -109402073 - L1MA10 LINE L1 -13 6321 5915 6579 22 3 0 chr9 8460687 8461449 -109401178 - L1PA3 LINE L1 -1 6154 5391 303 167 24 60 chr9 8461558 8461642 -109400985 + L1M4 LINE L1 2896 2976 -3170 2334 95 0 0 chr9 8461994 8462288 -109400339 + AluSx SINE Alu 3 296 -16 5286 56 0 2 chr9 8462306 8462950 -109399677 + HERVL LTR ERVL 2034 2676 -2978 974 247 126 40 chr9 8463231 8463908 -109398719 - L1MEc LINE L1 -4813 1583 849 1333 275 61 7 chr9 8463926 8464369 -109398258 - L1MEc LINE L1 -5640 756 290 187 336 101 40 chr9 8464369 8464518 -109398109 - MER5A DNA MER1_type -16 173 16 208 352 66 9 chr9 8464709 8464902 -109397725 + MIR SINE MIR 18 221 -41 387 324 101 26 chr9 8464995 8465301 -109397326 - HAL1 LINE L1 -1353 1154 826 780 179 0 22 chr9 8465601 8465785 -109396842 + CT-rich Low_complexity Low_complexity 1 180 0 1909 161 0 13 chr9 8466285 8466590 -109396037 + AluJb SINE Alu 3 303 -9 243 204 0 0 chr9 8466913 8466967 -109395660 + (TATATG)n Simple_repeat Simple_repeat 4 57 0 2374 100 0 0 chr9 8467392 8467702 -109394925 + AluSx SINE Alu 1 310 -2 400 357 78 0 chr9 8468955 8469109 -109393518 - L2 LINE L2 -1 3271 3106 518 243 41 18 chr9 8469231 8469663 -109392964 + LTR33 LTR ERVL 3 521 0 228 195 0 0 chr9 8469888 8469929 -109392698 + MER34 LTR ERV1 6 46 -496 1491 187 127 19 chr9 8469987 8470356 -109392271 + MER39 LTR ERV1 290 698 -9 1938 227 38 47 chr9 8470399 8470975 -109391652 + MLT1E3 LTR MaLR 4 574 -50 1092 173 25 0 chr9 8471260 8471457 -109391170 + MER3 DNA MER1_type 3 204 -5 3109 131 15 27 chr9 8471556 8471963 -109390664 - L1PA16 LINE L1 0 6166 5766 180 0 0 0 chr9 8471963 8471983 -109390644 + (TTTA)n Simple_repeat Simple_repeat 4 23 0 3109 131 15 27 chr9 8471983 8472124 -109390503 - L1PA16 LINE L1 -400 5766 5625 22 0 0 0 chr9 8472159 8472181 -109390446 + AT_rich Low_complexity Low_complexity 1 22 0 211 350 114 24 chr9 8472391 8472514 -109390113 + MIR3 SINE MIR 13 146 -62 22 35 0 0 chr9 8472729 8472758 -109389869 + AT_rich Low_complexity Low_complexity 1 29 0 1959 219 16 26 chr9 8473203 8473628 -109388999 - MER74B LTR ERVL -26 596 176 566 186 9 9 chr9 8473679 8473792 -109388835 - MER74A LTR ERVL -445 113 1 262 306 86 27 chr9 8473805 8474027 -109388600 + L1MC4 LINE L1 5614 5848 -1960 875 173 21 37 chr9 8474384 8474575 -109388052 - MER5A DNA MER1_type 0 189 2 198 0 0 0 chr9 8475685 8475707 -109386920 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 38668 40 6 0 chr9 8475707 8481192 -109381435 - L1PA4 LINE L1 -16 6139 623 823 51 0 0 chr9 8481190 8481288 -109381339 - L1PA4 LINE L1 -6048 98 1 * 288 169 15 0 chr9 8481684 8481749 -109380878 - MADE1 DNA Mariner -1 79 14 355 365 76 25 chr9 8485329 8485606 -109377021 - L2 LINE L2 -5 3267 2977 407 312 153 27 chr9 8486846 8487218 -109375409 + MLT1L LTR MaLR 143 561 -54 999 228 97 28 chr9 8487476 8487949 -109374678 - Charlie4a DNA MER1_type 0 508 3 346 232 61 0 chr9 8488764 8488846 -109373781 + L1MC4 LINE L1 6617 6703 -1339 333 0 0 0 chr9 8488858 8488895 -109373732 + (GA)n Simple_repeat Simple_repeat 2 38 0 326 208 78 0 chr9 8489411 8489488 -109373139 + L1MC4 LINE L1 6621 6703 -1339 333 0 0 0 chr9 8489500 8489537 -109373090 + (GA)n Simple_repeat Simple_repeat 2 38 0 2728 231 44 5 chr9 8490220 8490973 -109371654 + L1ME1 LINE L1 3981 4762 -1384 2015 129 0 0 chr9 8491626 8491905 -109370722 + AluSx SINE Alu 1 279 -33 249 108 0 0 chr9 8491905 8491942 -109370685 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 841 271 48 36 chr9 8492353 8492604 -109370023 + MIR SINE MIR 8 261 -1 2198 193 48 51 chr9 8492656 8493441 -109369186 + L1ME1 LINE L1 4801 5621 -545 449 213 0 0 chr9 8493441 8493521 -109369106 + AluJ/FLAM SINE Alu 5 84 -228 2198 193 48 51 chr9 8493521 8493771 -109368856 + L1ME1 LINE L1 5621 5870 -296 3718 172 18 1 chr9 8493773 8494935 -109367692 - L1M2 LINE L1 -490 5822 4647 191 329 96 0 chr9 8494960 8495033 -109367594 - MIR SINE MIR -109 153 74 191 388 36 24 chr9 8495395 8495560 -109367067 + L2 LINE L2 2887 3053 -219 392 324 71 24 chr9 8497171 8497341 -109365286 + MER5B DNA MER1_type 1 178 0 233 94 0 0 chr9 8497825 8497857 -109364770 - L2 LINE L2 -259 3054 3023 190 303 0 15 chr9 8497869 8497935 -109364692 + L2 LINE L2 3249 3313 0 230 299 55 24 chr9 8498041 8498168 -109364459 - L2 LINE L2 -481 2833 2703 1010 249 155 22 chr9 8498215 8498661 -109363966 - L2 LINE L2 -590 2724 2220 207 241 12 60 chr9 8498707 8498790 -109363837 + CT-rich Low_complexity Low_complexity 5 83 0 252 203 34 17 chr9 8498908 8498967 -109363660 + MIR SINE MIR 82 141 -67 2101 221 21 0 chr9 8499245 8499712 -109362915 + LTR53 LTR ERVL 1 477 -42 1841 125 3 42 chr9 8499727 8500014 -109362613 + AluSq SINE Alu 1 276 -37 693 194 17 6 chr9 8500016 8500191 -109362436 + GA-rich Low_complexity Low_complexity 3 179 0 2271 85 0 10 chr9 8500232 8500526 -109362101 - AluY SINE Alu -20 291 1 2161 112 3 38 chr9 8500526 8500840 -109361787 - AluSx SINE Alu -1 311 9 384 306 113 22 chr9 8500844 8501066 -109361561 + MLT1I LTR MaLR 150 391 -18 776 180 97 44 chr9 8501336 8501542 -109361085 - MER20 DNA MER1_type -2 217 1 2100 94 42 7 chr9 8502349 8502636 -109359991 + AluSc SINE Alu 1 297 -12 24 0 0 0 chr9 8504333 8504357 -109358270 + AT_rich Low_complexity Low_complexity 1 24 0 308 197 0 45 chr9 8504488 8504554 -109358073 + L2 LINE L2 3249 3311 -2 412 240 50 0 chr9 8505573 8505673 -109356954 - L2 LINE L2 -4 3309 3205 * 1553 278 42 24 chr9 8505671 8506168 -109356459 - L2 LINE L2 -500 2814 2309 288 327 137 29 chr9 8506192 8506470 -109356157 - L2 LINE L2 -1 3312 3005 1487 127 27 0 chr9 8506501 8506722 -109355905 + MER30 DNA MER1_type 4 230 0 251 121 52 0 chr9 8507748 8507806 -109354821 + HSMAR1 DNA Mariner 1227 1287 0 319 261 8 75 chr9 8509833 8509967 -109352660 + MIR SINE MIR 88 212 -50 296 244 9 61 chr9 8510916 8511031 -109351596 + MLT1L LTR MaLR 387 495 -120 230 340 29 10 chr9 8511108 8511211 -109351416 + L2 LINE L2 3181 3285 -28 189 0 0 0 chr9 8511407 8511428 -109351199 + (T)n Simple_repeat Simple_repeat 1 21 0 282 250 100 0 chr9 8512489 8512589 -109350038 - L1ME LINE L1 -381 5740 5631 2250 121 36 33 chr9 8513647 8514010 -109348617 + THE1B LTR MaLR 1 364 0 25 31 0 0 chr9 8516028 8516060 -109346567 + AT_rich Low_complexity Low_complexity 1 32 0 533 309 104 17 chr9 8516203 8516433 -109346194 + MIR SINE MIR 12 261 -1 196 293 0 35 chr9 8516915 8516973 -109345654 + MER5A DNA MER1_type 45 100 -89 215 179 0 0 chr9 8516991 8517030 -109345597 + L2 LINE L2 3257 3295 -18 2012 151 0 3 chr9 8517223 8517527 -109345100 + AluSx SINE Alu 1 303 -9 978 70 0 56 chr9 8517529 8517672 -109344955 + AluY SINE Alu 175 309 -2 216 0 0 0 chr9 8518052 8518076 -109344551 + (A)n Simple_repeat Simple_repeat 1 24 0 216 240 133 93 chr9 8519218 8519368 -109343259 + MER5A DNA MER1_type 34 189 0 324 93 19 0 chr9 8519441 8519495 -109343132 - L1PB2 LINE L1 -2 6149 6095 503 265 7 52 chr9 8519498 8519564 -109343063 - L2 LINE L2 -9 3263 3204 1725 208 43 41 chr9 8519564 8520030 -109342597 - MLT1C LTR MaLR 0 467 1 503 265 7 52 chr9 8520030 8520099 -109342528 - L2 LINE L2 -68 3204 3134 211 292 150 0 chr9 8521001 8521114 -109341513 - MIR SINE MIR -5 257 128 23 33 0 0 chr9 8522324 8522354 -109340273 + AT_rich Low_complexity Low_complexity 1 30 0 330 383 6 16 chr9 8523021 8523204 -109339423 + MIR SINE MIR 8 188 -74 459 254 47 41 chr9 8524697 8524755 -109337872 - LTR67 LTR ERVL -293 264 208 1522 105 0 0 chr9 8524755 8524955 -109337672 - AluSg/x SINE Alu -2 310 111 459 254 47 41 chr9 8524955 8525065 -109337562 - LTR67 LTR ERVL -349 208 95 207 0 0 0 chr9 8525080 8525103 -109337524 + (A)n Simple_repeat Simple_repeat 1 23 0 2952 271 105 56 chr9 8525225 8526016 -109336611 + L2 LINE L2 1511 2393 -921 2316 77 10 3 chr9 8526016 8526315 -109336312 + AluSg SINE Alu 1 301 -9 2952 271 105 56 chr9 8526315 8526839 -109335788 + L2 LINE L2 2393 2890 -424 186 194 0 0 chr9 8527057 8527088 -109335539 - L2 LINE L2 -23 3249 3219 2438 91 0 0 chr9 8527421 8527730 -109334897 + AluSc SINE Alu 1 309 0 318 26 0 0 chr9 8528117 8528156 -109334471 + (CA)n Simple_repeat Simple_repeat 2 40 0 224 307 40 0 chr9 8528346 8528421 -109334206 - MIR SINE MIR -14 248 171 323 217 17 104 chr9 8530274 8530389 -109332238 - MIR SINE MIR -108 154 50 1922 128 45 0 chr9 8530639 8530928 -109331699 + AluSg SINE Alu 1 302 -8 428 222 126 29 chr9 8530976 8531183 -109331444 - HAL1 LINE L1 -5 2502 2276 581 290 80 8 chr9 8531259 8531497 -109331130 - L2 LINE L2 0 3313 3059 1929 228 120 86 chr9 8531497 8532815 -109329812 - HAL1 LINE L1 -331 2176 814 2579 52 3 0 chr9 8533197 8533505 -109329122 - AluY SINE Alu -2 309 1 216 200 0 0 chr9 8533758 8533803 -109328824 + (TA)n Simple_repeat Simple_repeat 1 45 0 235 0 0 54 chr9 8535646 8535683 -109326944 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 233 330 28 28 chr9 8536455 8536561 -109326066 + L2 LINE L2 3158 3263 -50 322 282 101 32 chr9 8536899 8537026 -109325601 - MER5B DNA MER1_type -39 150 5 195 329 53 26 chr9 8537316 8537392 -109325235 - MIR SINE MIR -162 100 23 353 330 98 15 chr9 8538197 8538400 -109324227 - MIR SINE MIR -34 228 9 650 255 51 23 chr9 8538965 8539199 -109323428 - MIR SINE MIR -23 239 3 188 35 35 0 chr9 8540865 8540894 -109321733 + (TAA)n Simple_repeat Simple_repeat 1 30 0 279 288 68 38 chr9 8542690 8542822 -109319805 - L2 LINE L2 0 3272 3137 370 299 149 8 chr9 8544519 8544653 -109317974 - MER5A DNA MER1_type -6 183 31 414 226 66 9 chr9 8545632 8545738 -109316889 + MER117 DNA MER1_type 7 118 -79 306 270 45 0 chr9 8545926 8546015 -109316612 - L2 LINE L2 0 3313 3221 9143 213 39 25 chr9 8547186 8548977 -109313650 - L1MC1 LINE L1 0 6333 4569 2474 62 0 0 chr9 8548977 8549292 -109313335 + AluSc SINE Alu 1 315 0 9143 213 39 25 chr9 8549292 8551311 -109311316 - L1MC1 LINE L1 -1764 4569 2460 1949 166 77 0 chr9 8551717 8552055 -109310572 - THE1B LTR MaLR 0 364 1 11437 103 5 2 chr9 8552055 8553630 -109308997 - THE1B-int LTR MaLR 0 1580 1 2058 108 108 15 chr9 8553630 8553963 -109308664 - THE1B LTR MaLR 0 364 1 283 294 49 10 chr9 8554256 8554358 -109308269 - MIR SINE MIR -94 168 63 885 242 67 8 chr9 8554497 8554737 -109307890 - L1PA16 LINE L1 0 6172 5921 474 287 84 0 chr9 8555177 8555320 -109307307 + MIR SINE MIR 89 243 -19 288 274 168 9 chr9 8555329 8555442 -109307185 - MER94 DNA DNA -1 133 3 589 316 92 5 chr9 8556487 8556693 -109305934 + MIR SINE MIR 29 252 -10 497 309 48 30 chr9 8556945 8557110 -109305517 - MIR SINE MIR -77 185 18 325 375 8 0 chr9 8557462 8557582 -109305045 - MIR SINE MIR -65 143 23 198 0 0 0 chr9 8557949 8557971 -109304656 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 1166 212 29 67 chr9 8559489 8559880 -109302747 + MLT1B LTR MaLR 1 342 -32 403 331 73 17 chr9 8560315 8560402 -109302225 + MIR SINE MIR 65 146 -116 1612 171 72 17 chr9 8560402 8560748 -109301879 - MLT1A1 LTR MaLR 0 365 1 403 331 73 17 chr9 8560748 8560838 -109301789 + MIR SINE MIR 146 252 -10 280 310 80 10 chr9 8561416 8561516 -109301111 - MIR SINE MIR -72 190 84 369 198 0 47 chr9 8562275 8562361 -109300266 - MIR SINE MIR -5 257 176 980 273 112 12 chr9 8562863 8563281 -109299346 + LTR16B LTR ERVL 1 460 -4 21 0 0 0 chr9 8564338 8564359 -109298268 + AT_rich Low_complexity Low_complexity 1 21 0 928 186 60 5 chr9 8565591 8565790 -109296837 + MER6B DNA MER2_type 1 210 0 2328 192 29 5 chr9 8566164 8566571 -109296056 + MLT2C2 LTR ERVL 7 427 -37 432 0 0 0 chr9 8566571 8566619 -109296008 + (CA)n Simple_repeat Simple_repeat 2 49 0 2328 192 29 5 chr9 8566619 8566658 -109295969 + MLT2C2 LTR ERVL 427 464 0 323 106 0 0 chr9 8567646 8567693 -109294934 - L2 LINE L2 0 3313 3267 2894 6 0 6 chr9 8567838 8568158 -109294469 + AluYb8 SINE Alu 1 318 0 22 0 0 0 chr9 8569592 8569614 -109293013 + AT_rich Low_complexity Low_complexity 1 22 0 2023 151 137 11 chr9 8570596 8570961 -109291666 + MSTA LTR MaLR 18 428 0 652 139 9 0 chr9 8570961 8571069 -109291558 + MSTA-int LTR MaLR 1 109 -1542 * 1779 128 7 14 chr9 8571064 8571354 -109291273 + MSTA-int LTR MaLR 1293 1580 0 2217 144 105 5 chr9 8571354 8571743 -109290884 + MSTA LTR MaLR 1 428 0 1090 278 86 24 chr9 8572250 8572621 -109290006 - MLT1J1 LTR MaLR -45 401 8 326 298 35 26 chr9 8573868 8573982 -109288645 - LTR67 LTR ERVL -6 551 437 1867 165 71 10 chr9 8574342 8574736 -109287891 + LTR52 LTR ERVL 1 418 -3 181 191 0 29 chr9 8575428 8575496 -109287131 + GA-rich Low_complexity Low_complexity 3 68 0 245 295 0 108 chr9 8575669 8575808 -109286819 - L3 LINE CR1 -21 1556 1433 229 402 21 0 chr9 8577597 8577694 -109284933 - MIR SINE MIR -142 120 22 355 240 88 2 chr9 8577944 8578063 -109284564 - MIR SINE MIR -67 141 13 295 312 65 14 chr9 8578100 8578238 -109284389 + MIR SINE MIR 67 211 -51 1069 202 10 5 chr9 8578586 8578794 -109283833 + MER2 DNA MER2_type 2 210 -135 23 54 0 0 chr9 8578804 8578841 -109283786 + AT_rich Low_complexity Low_complexity 1 37 0 353 269 67 10 chr9 8578933 8579037 -109283590 - MIR SINE MIR -102 160 51 7144 216 91 22 chr9 8579072 8579520 -109283107 - L1MB3 LINE L1 -2 6417 6001 2492 162 16 2 chr9 8579520 8579946 -109282681 + MSTB1 LTR MaLR 1 432 0 7144 216 91 22 chr9 8579946 8581209 -109281418 - L1MB3 LINE L1 -418 6001 4826 2065 132 0 0 chr9 8581209 8581520 -109281107 - AluSc SINE Alu 0 311 1 7144 216 91 22 chr9 8581520 8582581 -109280046 - L1MB3 LINE L1 -1593 4826 3839 1676 146 0 4 chr9 8582581 8582828 -109279799 - AluSx SINE Alu -66 246 1 7144 216 91 22 chr9 8582828 8584802 -109277825 - L1MB3 LINE L1 -2580 3839 1340 857 211 43 24 chr9 8584809 8585017 -109277610 + AluJo SINE Alu 84 295 -17 5375 172 147 18 chr9 8585039 8586207 -109276420 - L1MB3 LINE L1 -5044 1340 22 198 0 0 0 chr9 8586753 8586775 -109275852 + (T)n Simple_repeat Simple_repeat 1 22 0 212 328 0 0 chr9 8586936 8586997 -109275630 - L3b LINE CR1 -243 1340 1280 1187 321 80 5 chr9 8587288 8587874 -109274753 - L1ME3A LINE L1 -258 5981 5352 1710 263 94 22 chr9 8587900 8588890 -109273737 - L1ME3A LINE L1 -2814 3401 2341 316 298 123 6 chr9 8588928 8589099 -109273528 - L1ME3A LINE L1 -4093 2303 2113 21 0 0 0 chr9 8589278 8589299 -109273328 + AT_rich Low_complexity Low_complexity 1 21 0 364 208 28 176 chr9 8590331 8590547 -109272080 + MLT1K LTR MaLR 399 582 -6 323 335 112 6 chr9 8590560 8590739 -109271888 + L2 LINE L2 3116 3313 0 180 250 264 0 chr9 8590962 8591034 -109271593 + MIR SINE MIR 80 170 -92 241 224 0 59 chr9 8591552 8591637 -109270990 + A-rich Low_complexity Low_complexity 5 84 0 211 216 0 0 chr9 8592548 8592599 -109270028 + T-rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr9 8593542 8593563 -109269064 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr9 8596434 8596459 -109266168 + AT_rich Low_complexity Low_complexity 1 25 0 281 197 28 0 chr9 8596475 8596546 -109266081 - MER116 DNA Mariner -7 73 1 220 256 0 0 chr9 8598060 8598103 -109264524 + L3 LINE CR1 1524 1566 -11 243 0 0 0 chr9 8598388 8598415 -109264212 + (TG)n Simple_repeat Simple_repeat 2 28 0 * 360 0 0 0 chr9 8598414 8598454 -109264173 + (TA)n Simple_repeat Simple_repeat 1 40 0 12214 125 21 60 chr9 8598732 8601033 -109261594 + Tigger1 DNA MER2_type 3 2214 -204 28888 113 28 38 chr9 8601033 8607241 -109255386 - L1PA7 LINE L1 -3 6151 13 814 133 109 24 chr9 8607250 8607415 -109255212 + Tigger1 DNA MER2_type 2240 2418 0 213 308 165 0 chr9 8607571 8607662 -109254965 - MIR SINE MIR -72 136 31 22011 80 36 11 chr9 8610336 8614511 -109248116 + L1PA7 LINE L1 1852 6132 -22 194 0 0 37 chr9 8616023 8616050 -109246577 + (TCTA)n Simple_repeat Simple_repeat 1 26 0 230 296 11 45 chr9 8616152 8616240 -109246387 + L2 LINE L2 3229 3313 0 186 299 86 34 chr9 8621612 8621729 -109240898 + MIR SINE MIR 34 156 -106 265 213 0 0 chr9 8622094 8622141 -109240486 + L2 LINE L2 3214 3260 -12 193 243 272 10 chr9 8622971 8623074 -109239553 + L2 LINE L2 2364 2493 -821 548 175 171 25 chr9 8623191 8623287 -109239340 - MER63B DNA MER1_type -750 310 229 4295 157 28 6 chr9 8623287 8624001 -109238626 + MER44D DNA MER2_type 2 603 -2 548 175 171 25 chr9 8624001 8624147 -109238480 - MER63B DNA MER1_type -831 229 7 415 252 118 30 chr9 8624257 8624392 -109238235 - L2 LINE L2 -8 3305 3159 1682 187 38 51 chr9 8624483 8624878 -109237749 + MLT1B LTR MaLR 1 390 0 372 327 57 39 chr9 8625148 8625533 -109237094 - HAL1b LINE L1 -659 689 298 184 330 174 0 chr9 8625610 8625725 -109236902 + L2 LINE L2 2901 3035 -237 34 24 0 0 chr9 8625937 8625978 -109236649 + AT_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chr9 8626832 8626854 -109235773 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr9 8627661 8627696 -109234931 + AT_rich Low_complexity Low_complexity 1 35 0 653 275 67 22 chr9 8627789 8628058 -109234569 + L1MC4a LINE L1 5563 5843 -1965 270 0 0 0 chr9 8628641 8628671 -109233956 + (A)n Simple_repeat Simple_repeat 1 30 0 237 277 0 15 chr9 8629409 8629474 -109233153 - MER91 DNA MER1_type 0 140 77 2355 99 0 0 chr9 8629731 8630033 -109232594 + AluSc SINE Alu 3 304 -5 255 31 0 0 chr9 8630316 8630348 -109232279 + (TGAA)n Simple_repeat Simple_repeat 4 35 0 1905 134 0 14 chr9 8630348 8630632 -109231995 - AluSx SINE Alu -32 280 1 894 137 0 0 chr9 8630716 8630862 -109231765 + (TA)n Simple_repeat Simple_repeat 2 147 0 836 80 0 0 chr9 8630863 8630963 -109231664 - AluSc SINE Alu -17 292 193 28 86 0 0 chr9 8630964 8631034 -109231593 + AT_rich Low_complexity Low_complexity 1 70 0 1564 179 74 23 chr9 8631896 8632247 -109230380 + MSTB LTR MaLR 1 369 -57 225 318 38 23 chr9 8632619 8632751 -109229876 + MER5A DNA MER1_type 31 164 -25 * 592 250 7 0 chr9 8632639 8632779 -109229848 - MER5A DNA MER1_type -40 149 9 246 263 123 35 chr9 8635372 8635486 -109227141 + MIR SINE MIR 57 180 -82 2546 28 0 3 chr9 8635745 8636036 -109226591 + AluY SINE Alu 22 311 0 293 221 42 63 chr9 8636046 8636088 -109226539 - MIR3 SINE MIR -5 203 162 892 154 15 67 chr9 8636088 8636220 -109226407 + MER5A DNA MER1_type 3 123 -66 1789 179 0 29 chr9 8636220 8636532 -109226095 - AluSx SINE Alu -9 303 1 892 154 15 67 chr9 8636532 8636594 -109226033 + MER5A DNA MER1_type 123 187 -2 293 221 42 63 chr9 8636594 8636646 -109225981 - MIR3 SINE MIR -46 162 111 304 194 233 0 chr9 8637717 8637820 -109224807 - MER103 DNA DNA -37 129 3 300 135 54 27 chr9 8638608 8638682 -109223945 + L1MC5 LINE L1 7832 7907 -54 25 0 0 0 chr9 8642031 8642056 -109220571 + AT_rich Low_complexity Low_complexity 1 25 0 416 216 165 44 chr9 8642516 8642735 -109219892 + MLT1H LTR MaLR 4 292 -257 370 209 90 37 chr9 8642775 8642909 -109219718 + MLT1H LTR MaLR 405 545 -4 661 268 34 43 chr9 8643684 8644009 -109218618 - MARNA DNA Mariner -9 577 256 789 245 38 5 chr9 8644216 8644428 -109218199 + MER20 DNA MER1_type 1 219 0 687 283 35 10 chr9 8644709 8644907 -109217720 - MIR SINE MIR -10 252 50 337 338 27 34 chr9 8645089 8645237 -109217390 + MIR SINE MIR 50 196 -66 291 114 0 0 chr9 8647093 8647137 -109215490 + (CA)n Simple_repeat Simple_repeat 1 44 0 229 146 0 49 chr9 8647310 8647351 -109215276 + MIR SINE MIR 80 118 -144 342 311 37 31 chr9 8647732 8647893 -109214734 + MIR SINE MIR 63 224 -38 673 282 64 37 chr9 8649232 8649485 -109213142 - MIR SINE MIR -2 260 4 396 0 0 0 chr9 8650506 8650550 -109212077 + (TG)n Simple_repeat Simple_repeat 2 45 0 414 57 0 0 chr9 8650698 8650751 -109211876 + (TATG)n Simple_repeat Simple_repeat 4 56 0 * 677 54 21 0 chr9 8650750 8650843 -109211784 + (TCTA)n Simple_repeat Simple_repeat 2 96 0 363 23 0 0 chr9 8651021 8651065 -109211562 + (TG)n Simple_repeat Simple_repeat 2 45 0 21 0 0 0 chr9 8651358 8651379 -109211248 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr9 8652149 8652184 -109210443 + AT_rich Low_complexity Low_complexity 1 35 0 341 310 70 16 chr9 8656835 8656964 -109205663 + MIR SINE MIR 127 262 0 236 298 43 21 chr9 8657066 8657160 -109205467 - L2 LINE L2 -9 3263 3168 26 30 0 0 chr9 8657572 8657605 -109205022 + AT_rich Low_complexity Low_complexity 1 33 0 2155 117 7 0 chr9 8661436 8661735 -109200892 - AluSp SINE Alu -12 301 1 1458 188 49 10 chr9 8662152 8662440 -109200187 + AluJo SINE Alu 1 299 -13 420 272 136 19 chr9 8663002 8663164 -109199463 - MIR SINE MIR -59 203 23 562 291 11 11 chr9 8664530 8664709 -109197918 + MIR SINE MIR 2 180 -82 189 74 0 0 chr9 8665893 8665920 -109196707 + (T)n Simple_repeat Simple_repeat 1 27 0 441 254 113 7 chr9 8666780 8666922 -109195705 - MIR SINE MIR -60 202 46 484 281 135 23 chr9 8667002 8667262 -109195365 + L2 LINE L2 2606 2894 -420 473 296 196 39 chr9 8667611 8668020 -109194607 + L3 LINE CR1 1090 1562 -15 828 159 16 0 chr9 8669019 8669145 -109193482 + AluJb SINE Alu 7 134 -178 1467 202 10 17 chr9 8669158 8669450 -109193177 + AluJo SINE Alu 6 295 -17 186 294 88 15 chr9 8670626 8670694 -109191933 - MIR3 SINE MIR -18 190 118 320 378 7 13 chr9 8671404 8671555 -109191072 + MIR3 SINE MIR 41 190 -18 203 220 55 88 chr9 8673035 8673126 -109189501 + MIR SINE MIR 119 206 -56 715 233 61 0 chr9 8675079 8675242 -109187385 - MIR SINE MIR 0 262 90 1402 179 23 101 chr9 8675423 8675819 -109186808 + MLT1A1 LTR MaLR 1 365 0 271 336 38 15 chr9 8676743 8676874 -109185753 + MIR SINE MIR 41 174 -88 385 257 88 61 chr9 8677565 8677714 -109184913 + MIR3 SINE MIR 9 161 -68 218 246 228 0 chr9 8677821 8677878 -109184749 - MIR SINE MIR -69 139 70 989 172 0 0 chr9 8678073 8678230 -109184397 - AluJb SINE Alu -11 301 145 26 0 0 0 chr9 8679750 8679776 -109182851 + AT_rich Low_complexity Low_complexity 1 26 0 2214 99 0 20 chr9 8681036 8681339 -109181288 - AluSx SINE Alu -15 297 1 242 242 8 42 chr9 8682213 8682333 -109180294 + T-rich Low_complexity Low_complexity 2 117 0 230 337 191 13 chr9 8683161 8683464 -109179163 + L2 LINE L2 2429 2785 -529 322 261 109 25 chr9 8684146 8684265 -109178362 - MIR SINE MIR -30 232 104 191 192 58 39 chr9 8684260 8684312 -109178315 - L2 LINE L2 -4 3309 3257 * 209 338 39 0 chr9 8684320 8684397 -109178230 - MIR SINE MIR -155 107 28 737 325 49 0 chr9 8686027 8686270 -109176357 - MIR SINE MIR -5 257 3 24 53 0 0 chr9 8688172 8688210 -109174417 + AT_rich Low_complexity Low_complexity 1 38 0 2050 137 13 0 chr9 8688211 8688510 -109174117 - AluSx SINE Alu -5 307 5 622 177 0 54 chr9 8689032 8689162 -109173465 + FLAM_A SINE Alu 2 124 -9 25 0 0 0 chr9 8691103 8691128 -109171499 + AT_rich Low_complexity Low_complexity 1 25 0 285 291 34 34 chr9 8691269 8691386 -109171241 + Tigger8 DNA MER2_type 127 243 -423 490 219 10 0 chr9 8691558 8691654 -109170973 - MER94 DNA DNA -35 99 3 237 65 0 0 chr9 8691780 8691811 -109170816 + (GGGA)n Simple_repeat Simple_repeat 2 32 0 506 29 0 14 chr9 8691915 8691984 -109170643 + (GA)n Simple_repeat Simple_repeat 1 68 0 22 0 0 0 chr9 8692471 8692493 -109170134 + AT_rich Low_complexity Low_complexity 1 22 0 266 262 85 37 chr9 8693292 8693456 -109169171 + L1ME4a LINE L1 5933 6104 -17 558 286 5 46 chr9 8693798 8693994 -109168633 - MIR SINE MIR -70 192 5 1122 186 12 39 chr9 8695999 8696257 -109166370 + AluJo SINE Alu 60 310 -2 21 0 0 0 chr9 8696552 8696573 -109166054 + AT_rich Low_complexity Low_complexity 1 21 0 328 308 68 8 chr9 8697180 8697297 -109165330 + L2 LINE L2 3147 3270 -2 35 0 0 0 chr9 8697376 8697411 -109165216 + AT_rich Low_complexity Low_complexity 1 35 0 26 30 0 0 chr9 8697914 8697947 -109164680 + AT_rich Low_complexity Low_complexity 1 33 0 17257 68 1 5 chr9 8698232 8700470 -109162157 + L1P LINE L1 2780 5009 -1137 261 98 0 0 chr9 8700591 8700632 -109161995 + (C)n Simple_repeat Simple_repeat 1 41 0 474 273 58 0 chr9 8700669 8700808 -109161819 + MIR SINE MIR 111 257 -5 1873 107 4 0 chr9 8702072 8702325 -109160302 + AluSx SINE Alu 1 254 -58 981 310 90 35 chr9 8702361 8702906 -109159721 + L1M4 LINE L1 192 766 -5776 7057 118 8 98 chr9 8703007 8704341 -109158286 + Tigger1 DNA MER2_type 995 2208 -210 4774 84 0 0 chr9 8704341 8704933 -109157694 - L1PA7 LINE L1 -1 6153 5562 2817 50 0 0 chr9 8704933 8705256 -109157371 + L1PA5 LINE L1 5830 6152 -2 484 255 213 0 chr9 8706085 8706226 -109156401 - MER5A DNA MER1_type -2 187 17 214 333 11 21 chr9 8706514 8706607 -109156020 + L2 LINE L2 2604 2695 -619 262 261 108 64 chr9 8706780 8706937 -109155690 + L2 LINE L2 2896 3059 -213 208 348 87 26 chr9 8707050 8707165 -109155462 + L2 LINE L2 3134 3255 -17 413 210 15 29 chr9 8707477 8707682 -109154945 + GA-rich Low_complexity Low_complexity 1 202 0 320 202 8 42 chr9 8707690 8707809 -109154818 + A-rich Low_complexity Low_complexity 2 116 0 342 269 134 29 chr9 8707915 8708086 -109154541 + L1ME LINE L1 5607 5795 -326 501 208 88 31 chr9 8708586 8708611 -109154016 - LTR23-int LTR ERV1 -3789 4331 4309 1707 183 10 0 chr9 8708611 8708912 -109153715 - AluJo SINE Alu -8 304 1 501 208 88 31 chr9 8708912 8709045 -109153582 - LTR23-int LTR ERV1 -3811 4309 4164 488 247 58 42 chr9 8709069 8709415 -109153212 - LTR23-int LTR ERV1 -1923 2957 1952 3846 79 8 2 chr9 8709415 8709923 -109152704 - LTR6B LTR ERV1 0 558 48 6653 138 1 1 chr9 8709923 8710860 -109151767 - HERVS71 LTR ERV1 -48 8930 7994 8809 68 78 1 chr9 8710965 8712148 -109150479 - L1P LINE L1 -4015 2131 858 5845 37 17 0 chr9 8712141 8713082 -109149545 + L1PA4 LINE L1 5012 5968 -187 * 1853 148 0 24 chr9 8714694 8714991 -109147636 + AluJb SINE Alu 3 292 -20 696 172 0 67 chr9 8715100 8715234 -109147393 + FLAM_A SINE Alu 1 125 -8 316 295 18 27 chr9 8715364 8715476 -109147151 - L1MEd LINE L1 -5310 809 699 911 193 0 0 chr9 8715478 8715623 -109147004 - AluJb SINE Alu -28 284 140 1998 119 7 23 chr9 8716118 8716420 -109146207 - AluSx SINE Alu -15 297 1 2458 93 0 3 chr9 8717371 8717684 -109144943 - AluSx SINE Alu 0 312 1 799 163 124 28 chr9 8718009 8718187 -109144440 - MER31B LTR ERV1 0 466 272 255 277 50 40 chr9 8718297 8718398 -109144229 + MER5B DNA MER1_type 19 120 -58 1521 178 90 59 chr9 8718509 8718925 -109143702 - MER21B LTR ERV1 -186 745 317 1745 201 134 87 chr9 8718931 8719443 -109143184 + MER50 LTR ERV1 10 565 -169 2283 110 0 0 chr9 8719443 8719742 -109142885 - AluSg SINE Alu -11 299 1 1745 201 134 87 chr9 8719742 8719921 -109142706 + MER50 LTR ERV1 565 734 0 1215 151 45 113 chr9 8719922 8720268 -109142359 - MER39 LTR ERV1 -237 470 62 306 171 0 122 chr9 8720380 8720462 -109142165 - MER21A LTR ERV1 -859 72 1 628 270 66 5 chr9 8720470 8720709 -109141918 - L1 LINE L1 -1857 4289 4046 342 203 14 0 chr9 8720815 8720889 -109141738 - LTR54B LTR ERV1 -419 79 5 7295 168 32 15 chr9 8720890 8722190 -109140437 - MER57-int LTR ERV1 -390 7147 5825 6389 151 58 30 chr9 8722515 8723152 -109139475 - MER57-int LTR ERV1 -1717 5820 5202 1434 182 87 0 chr9 8723152 8723270 -109139357 + AluSx SINE Alu 1 107 -205 419 0 20 0 chr9 8723270 8723321 -109139306 + (TAA)n Simple_repeat Simple_repeat 2 53 0 1434 182 87 0 chr9 8723321 8723477 -109139150 + AluSx SINE Alu 107 299 -13 6389 151 58 30 chr9 8723477 8724083 -109138544 - MER57-int LTR ERV1 -2335 5202 4543 2250 94 0 20 chr9 8725567 8725865 -109136762 + AluSg SINE Alu 1 292 -18 1755 175 24 7 chr9 8726760 8727052 -109135575 - AluSx SINE Alu -15 297 1 249 238 149 36 chr9 8727099 8727435 -109135192 - L1ME4a LINE L1 -24 6097 5724 1175 177 12 49 chr9 8727444 8727533 -109135094 + MLT2B2 LTR ERVL 1 92 -423 4836 87 51 6 chr9 8727533 8728165 -109134462 - PABL_A LTR ERV1 0 660 1 1175 177 12 49 chr9 8728165 8728318 -109134309 + MLT2B2 LTR ERVL 92 234 -281 23 78 0 0 chr9 8728955 8729006 -109133621 + AT_rich Low_complexity Low_complexity 1 51 0 261 0 0 0 chr9 8729006 8729035 -109133592 + (TA)n Simple_repeat Simple_repeat 1 29 0 2165 120 0 3 chr9 8729035 8729334 -109133293 - AluSx SINE Alu -13 299 2 808 61 0 0 chr9 8729605 8729703 -109132924 + L1P LINE L1 1 98 -6048 * 5709 119 0 2 chr9 8729701 8730535 -109132092 + L1P LINE L1 623 1454 -4692 13695 51 5 0 chr9 8730648 8732936 -109129691 - L1PA5 LINE L1 -140 6014 3716 8061 28 16 0 chr9 8734857 8735864 -109126763 - L1PA3 LINE L1 0 6155 5144 4205 209 125 64 chr9 8735974 8736783 -109125844 - L1MC4 LINE L1 -144 7898 6971 2066 241 124 8 chr9 8736783 8737313 -109125314 - MLT1G1 LTR MaLR 0 595 4 4205 209 125 64 chr9 8737313 8737869 -109124758 - L1MC4 LINE L1 -1071 6971 6450 315 315 35 35 chr9 8738105 8738248 -109124379 + MIR3 SINE MIR 41 183 -25 378 0 0 0 chr9 8738923 8738965 -109123662 + (CA)n Simple_repeat Simple_repeat 2 43 0 229 203 31 31 chr9 8739061 8739125 -109123502 + G-rich Low_complexity Low_complexity 1 64 0 787 305 4 21 chr9 8739652 8739891 -109122736 - MIR SINE MIR -25 237 3 267 314 50 6 chr9 8740120 8740136 -109122491 - L1MA10 LINE L1 0 6334 6319 1347 231 34 0 chr9 8740136 8740430 -109122197 - L1ME1 LINE L1 -6 6160 5857 812 146 22 14 chr9 8740435 8740774 -109121853 + CT-rich Low_complexity Low_complexity 1 341 0 1523 163 22 22 chr9 8740800 8741077 -109121550 - AluJo SINE Alu -3 309 33 1500 185 48 0 chr9 8741077 8741347 -109121280 - L1ME1 LINE L1 -307 5859 5577 252 204 250 65 chr9 8741348 8741456 -109121171 + MER34 LTR ERV1 5 132 -410 1409 198 39 61 chr9 8741530 8741940 -109120687 + MER39 LTR ERV1 307 707 0 802 195 12 12 chr9 8741940 8742109 -109120518 - L1ME1 LINE L1 -583 5583 5415 660 298 5 6 chr9 8743222 8743415 -109119212 - MIR SINE MIR -34 228 38 810 210 23 109 chr9 8743798 8744033 -109118594 - MIR SINE MIR -10 252 39 1204 153 9 37 chr9 8744033 8744248 -109118379 - MER3 DNA MER1_type 0 209 1 810 210 23 109 chr9 8744248 8744269 -109118358 - MIR SINE MIR -223 39 18 1067 135 6 0 chr9 8744520 8744683 -109117944 - L1MA4 LINE L1 -362 5938 5775 257 214 60 0 chr9 8744684 8744768 -109117859 + (TA)n Simple_repeat Simple_repeat 1 89 0 496 289 121 0 chr9 8744768 8744958 -109117669 + LTR33 LTR ERVL 309 521 0 326 384 23 6 chr9 8745206 8745378 -109117249 + MIR3 SINE MIR 19 193 -15 23 0 0 0 chr9 8745843 8745866 -109116761 + AT_rich Low_complexity Low_complexity 1 23 0 2846 86 6 0 chr9 8746169 8746520 -109116107 + THE1A LTR MaLR 3 355 0 2857 96 7 0 chr9 8746521 8746938 -109115689 + THE1A-int LTR MaLR 2 421 -1159 2326 116 30 58 chr9 8747042 8747259 -109115368 - L1MA5A LINE L1 -175 6122 5900 1749 132 90 39 chr9 8747259 8747614 -109115013 - THE1C LTR MaLR -2 373 1 2326 116 30 58 chr9 8747614 8747701 -109114926 - L1MA5A LINE L1 -397 5900 5812 2038 158 0 0 chr9 8747701 8748004 -109114623 - AluJb SINE Alu -9 303 1 2326 116 30 58 chr9 8748004 8748162 -109114465 - L1MA5A LINE L1 -485 5812 5672 1260 220 86 40 chr9 8748169 8748574 -109114053 - L1ME2 LINE L1 -9 6155 5732 713 199 0 14 chr9 8749233 8749374 -109113253 + FLAM_C SINE Alu 3 141 -2 198 167 0 0 chr9 8749485 8749521 -109113106 + (TA)n Simple_repeat Simple_repeat 2 37 0 707 257 45 4 chr9 8749555 8749800 -109112827 - L1ME3A LINE L1 -220 5950 5696 23 33 0 0 chr9 8750312 8750342 -109112285 + AT_rich Low_complexity Low_complexity 1 30 0 216 0 0 0 chr9 8750379 8750403 -109112224 + (TA)n Simple_repeat Simple_repeat 1 24 0 21 57 0 0 chr9 8750471 8750506 -109112121 + AT_rich Low_complexity Low_complexity 1 35 0 1630 202 40 3 chr9 8750923 8751275 -109111352 - MLT1A1 LTR MaLR 0 365 1 306 208 0 14 chr9 8751483 8751555 -109111072 + HAL1b LINE L1 1197 1267 -81 469 33 0 0 chr9 8752098 8752159 -109110468 + L1PA4 LINE L1 6092 6152 -3 1756 170 3 50 chr9 8752159 8752541 -109110086 - MSTA LTR MaLR -64 364 1 8260 195 29 5 chr9 8752541 8754153 -109108474 - MSTA-int LTR MaLR 0 1651 2 702 151 122 14 chr9 8754154 8754293 -109108334 - MSTA LTR MaLR 0 428 275 315 93 0 0 chr9 8754293 8754336 -109108291 - THE1A LTR MaLR 0 355 313 644 179 0 0 chr9 8754336 8754459 -109108168 - THE1B LTR MaLR 0 364 242 24 0 0 0 chr9 8754750 8754774 -109107853 + AT_rich Low_complexity Low_complexity 1 24 0 23 54 0 0 chr9 8754907 8754944 -109107683 + AT_rich Low_complexity Low_complexity 1 37 0 206 146 24 24 chr9 8756352 8756393 -109106234 + CT-rich Low_complexity Low_complexity 2 42 0 588 98 12 0 chr9 8756521 8756603 -109106024 + AluY SINE Alu 1 83 -227 224 307 40 0 chr9 8757192 8757267 -109105360 + MIR SINE MIR 171 248 -14 291 28 0 0 chr9 8757459 8757495 -109105132 + (TG)n Simple_repeat Simple_repeat 2 37 0 2393 93 0 3 chr9 8757882 8758193 -109104434 - AluSg SINE Alu 0 310 1 1813 144 0 0 chr9 8758210 8758460 -109104167 - AluSq SINE Alu -63 250 1 308 270 87 0 chr9 8758461 8758576 -109104051 + L1ME2 LINE L1 6040 6164 0 332 174 122 26 chr9 8758596 8758711 -109103916 + L1MC5 LINE L1 7786 7911 -50 287 278 69 14 chr9 8759646 8759790 -109102837 + BaEV-int LTR ERV1 216 367 -6282 499 325 5 10 chr9 8760135 8760338 -109102289 + BaEV-int LTR ERV1 802 1003 -6782 732 320 39 34 chr9 8760505 8761192 -109101435 + BaEV-int LTR ERV1 1048 1738 -4911 1836 118 16 6 chr9 8761379 8761701 -109100926 - L1M3f LINE L1 -4221 1107 783 4941 120 5 0 chr9 8761701 8762451 -109100176 - THE1A-int LTR MaLR -826 754 1 2288 132 0 6 chr9 8762451 8762806 -109099821 - THE1A LTR MaLR 0 355 3 3660 115 48 0 chr9 8762810 8763368 -109099259 + BaEV-int LTR ERV1 4152 4736 -2355 577 103 0 0 chr9 8763368 8763446 -109099181 + Alu SINE Alu 1 78 -233 30 111 0 0 chr9 8763947 8764082 -109098545 + AT_rich Low_complexity Low_complexity 1 135 0 203 0 37 0 chr9 8764310 8764337 -109098290 + (TAGA)n Simple_repeat Simple_repeat 3 30 0 1400 248 48 3 chr9 8764579 8764910 -109097717 - MLT1A1 LTR MaLR -6 359 14 180 0 0 0 chr9 8764965 8764985 -109097642 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 2299 173 16 43 chr9 8766065 8766800 -109095827 - MER52A-int LTR ERV1 -1331 1966 953 * 5820 179 35 41 chr9 8766794 8767007 -109095620 - MER52A-int LTR ERV1 -1882 1261 1048 2275 159 3 0 chr9 8767007 8767379 -109095248 - THE1C LTR MaLR -2 373 1 5820 179 35 41 chr9 8767379 8768472 -109094155 - MER52A-int LTR ERV1 -2095 1048 30 437 271 6 54 chr9 8768477 8768643 -109093984 - MER52A LTR ERV1 0 1755 1598 489 306 22 71 chr9 8768648 8768916 -109093711 - MER52A LTR ERV1 -285 1470 1216 1756 170 69 20 chr9 8769152 8769499 -109093128 + THE1B LTR MaLR 1 364 0 11009 115 10 2 chr9 8769500 8771066 -109091561 + THE1B-int LTR MaLR 2 1579 -1 976 173 20 25 chr9 8771074 8771271 -109091356 + THE1B LTR MaLR 16 211 -153 1015 105 6 19 chr9 8771371 8771533 -109091094 - LTR14B LTR ERVK -432 176 17 570 336 8 4 chr9 8771533 8771795 -109090832 + Harlequin LTR ERV1 5494 5756 -2029 288 269 25 25 chr9 8772026 8772145 -109090482 + Harlequin LTR ERV1 4735 4853 -1796 386 298 28 37 chr9 8772561 8772776 -109089851 + Harlequin LTR ERV1 5326 5538 -1111 287 193 50 67 chr9 8773003 8773122 -109089505 + Harlequin LTR ERV1 3819 3935 -2961 1990 78 11 14 chr9 8773173 8773456 -109089171 - AluY SINE Alu -1 310 29 19477 33 7 0 chr9 8773762 8776263 -109086364 + L1P LINE L1 2545 5062 -1084 13802 89 6 5 chr9 8776363 8778427 -109084200 + L1P LINE L1 3038 5104 -1042 730 325 49 0 chr9 8828942 8829185 -109033442 - MIR SINE MIR -5 257 3 24 53 0 0 chr9 8831087 8831125 -109031502 + AT_rich Low_complexity Low_complexity 1 38 0 2023 137 13 0 chr9 8831126 8831425 -109031202 - AluSx SINE Alu -5 307 5 608 177 0 54 chr9 8831947 8832077 -109030550 + FLAM_A SINE Alu 2 124 -9 25 0 0 0 chr9 8834018 8834043 -109028584 + AT_rich Low_complexity Low_complexity 1 25 0 292 291 34 34 chr9 8834184 8834301 -109028326 + Tigger8 DNA MER2_type 127 243 -423 489 224 10 0 chr9 8834473 8834571 -109028056 - MER94 DNA DNA -35 99 1 636 143 0 0 chr9 8834696 8834808 -109027819 + (GA)n Simple_repeat Simple_repeat 1 112 0 22 0 0 0 chr9 8835294 8835316 -109027311 + AT_rich Low_complexity Low_complexity 1 22 0 277 262 85 37 chr9 8836115 8836279 -109026348 + L1ME4a LINE L1 5933 6104 -17 565 286 5 46 chr9 8836621 8836817 -109025810 - MIR SINE MIR -70 192 5 1133 189 8 39 chr9 8838822 8839081 -109023546 + AluJo SINE Alu 60 310 -2 21 0 0 0 chr9 8839376 8839397 -109023230 + AT_rich Low_complexity Low_complexity 1 21 0 343 308 68 8 chr9 8840004 8840121 -109022506 + L2 LINE L2 3147 3270 -2 35 0 0 0 chr9 8840200 8840235 -109022392 + AT_rich Low_complexity Low_complexity 1 35 0 26 30 0 0 chr9 8840629 8840662 -109021965 + AT_rich Low_complexity Low_complexity 1 33 0 409 199 7 28 chr9 8841087 8841228 -109021399 + CT-rich Low_complexity Low_complexity 1 138 0 1873 159 7 3 chr9 8841693 8842001 -109020626 + AluJb SINE Alu 3 311 -1 21 0 0 0 chr9 8843847 8843868 -109018759 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 8843971 8843992 -109018635 + AT_rich Low_complexity Low_complexity 1 21 0 907 227 71 21 chr9 8844133 8844371 -109018256 + MIR SINE MIR 11 260 -2 245 256 24 39 chr9 8844485 8844587 -109018040 + GA-rich Low_complexity Low_complexity 3 170 0 207 357 14 13 chr9 8845594 8845673 -109016954 - MIR3 SINE MIR -54 154 75 406 327 73 29 chr9 8845991 8846196 -109016431 - MIR SINE MIR -39 223 10 183 146 0 0 chr9 8847480 8847521 -109015106 + (TTA)n Simple_repeat Simple_repeat 2 42 0 746 224 6 17 chr9 8847580 8847754 -109014873 + MER104 DNA Tc2 6 177 -3 454 333 138 4 chr9 8847757 8847988 -109014639 - MIR SINE MIR 0 262 1 204 40 0 0 chr9 8848499 8848524 -109014103 + (TG)n Simple_repeat Simple_repeat 2 26 0 360 289 47 31 chr9 8849100 8849236 -109013391 + MIR3 SINE MIR 49 187 -21 1906 148 0 22 chr9 8850085 8850402 -109012225 - AluJb SINE Alu -2 310 1 500 219 0 0 chr9 8850451 8850547 -109012080 - MER5A DNA MER1_type -80 109 14 425 309 8 8 chr9 8851489 8851615 -109011012 + MER5A DNA MER1_type 7 132 -57 1841 92 0 0 chr9 8851618 8851869 -109010758 - L1P LINE L1 -2459 3687 3437 279 286 52 104 chr9 8852070 8852301 -109010326 - L3b LINE CR1 -74 1509 1291 5632 165 87 3 chr9 8852913 8853801 -109008826 + Tigger3b DNA MER2_type 2 813 -2215 294 29 0 0 chr9 8853801 8853836 -109008791 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1968 107 7 4 chr9 8853836 8854106 -109008521 - AluSq SINE Alu -42 271 1 5632 165 87 3 chr9 8854106 8854349 -109008278 + Tigger3b DNA MER2_type 812 1230 -1 333 118 0 0 chr9 8855526 8855577 -109007050 + (CA)n Simple_repeat Simple_repeat 2 52 0 1085 159 85 0 chr9 8855926 8856127 -109006500 + L1MA7 LINE L1 5893 6110 -181 27 0 0 0 chr9 8856149 8856176 -109006451 + AT_rich Low_complexity Low_complexity 1 27 0 316 344 94 25 chr9 8859001 8859161 -109003466 + MIR3 SINE MIR 8 178 -30 279 0 0 0 chr9 8859761 8859792 -109002835 + (T)n Simple_repeat Simple_repeat 1 31 0 340 250 26 0 chr9 8859793 8859869 -109002758 + MER5B DNA MER1_type 65 142 -36 2239 99 3 0 chr9 8860145 8860438 -109002189 - AluSg SINE Alu -16 294 1 380 299 24 31 chr9 8860648 8860775 -109001852 - MIR3 SINE MIR -6 202 77 225 191 0 0 chr9 8860882 8860924 -109001703 - Charlie8 DNA MER1_type -28 2389 2348 377 301 78 44 chr9 8860935 8861375 -109001252 - Charlie8 DNA MER1_type -2196 221 1 272 324 70 28 chr9 8861561 8861703 -109000924 - MIR3 SINE MIR -49 159 12 1094 213 13 30 chr9 8862744 8862974 -108999653 + AluJb SINE Alu 61 286 -26 392 324 42 19 chr9 8863875 8864088 -108998539 + L1MC/D LINE L1 5586 5803 -2005 29 60 0 0 chr9 8864329 8864379 -108998248 + AT_rich Low_complexity Low_complexity 1 50 0 1645 182 0 10 chr9 8867868 8868159 -108994468 + AluJb SINE Alu 1 288 -24 204 125 0 0 chr9 8869071 8869103 -108993524 + (TCCC)n Simple_repeat Simple_repeat 3 34 0 294 252 146 24 chr9 8872833 8872956 -108989671 + MIR3 SINE MIR 57 194 -14 2276 68 0 4 chr9 8873010 8873289 -108989338 - AluY SINE Alu -33 278 1 896 200 5 36 chr9 8873501 8873696 -108988931 - MER5A DNA MER1_type 0 189 1 243 220 17 0 chr9 8873763 8873822 -108988805 + (TA)n Simple_repeat Simple_repeat 2 61 0 185 0 40 0 chr9 8874045 8874070 -108988557 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 333 0 0 0 chr9 8874637 8874674 -108987953 + (TG)n Simple_repeat Simple_repeat 1 37 0 315 281 156 0 chr9 8875944 8876040 -108986587 - L2 LINE L2 -18 3295 3185 29 28 0 0 chr9 8876755 8876791 -108985836 + AT_rich Low_complexity Low_complexity 1 36 0 426 263 51 36 chr9 8876967 8877104 -108985523 - MIR3 SINE MIR -45 163 25 22 0 0 0 chr9 8879343 8879365 -108983262 + AT_rich Low_complexity Low_complexity 1 22 0 219 275 110 28 chr9 8880730 8880839 -108981788 - L2 LINE L2 -15 3298 3181 854 150 0 0 chr9 8881648 8881775 -108980852 - FLAM_C SINE Alu -16 127 1 247 375 27 18 chr9 8882697 8882809 -108979818 + L2 LINE L2 3154 3266 -6 234 0 0 0 chr9 8883134 8883160 -108979467 + (A)n Simple_repeat Simple_repeat 1 26 0 26 0 0 0 chr9 8886503 8886529 -108976098 + AT_rich Low_complexity Low_complexity 1 26 0 22 35 0 0 chr9 8886924 8886953 -108975674 + AT_rich Low_complexity Low_complexity 1 29 0 722 185 15 29 chr9 8887204 8887367 -108975260 - MIR SINE MIR 0 262 103 1311 204 39 0 chr9 8892336 8892644 -108969983 + MER33 DNA MER1_type 5 324 0 565 308 31 62 chr9 8893827 8894275 -108968352 + L2 LINE L2 340 773 -2541 1290 346 103 36 chr9 8894275 8895873 -108966754 + L2 LINE L2 1118 2823 -491 1997 158 3 32 chr9 8895933 8896280 -108966347 - MER1B DNA MER1_type 0 337 1 21 0 0 0 chr9 8896490 8896511 -108966116 + AT_rich Low_complexity Low_complexity 1 21 0 462 257 182 30 chr9 8897671 8897873 -108964754 + MIR SINE MIR 3 228 -34 479 248 35 0 chr9 8897902 8898015 -108964612 + MIR SINE MIR 75 191 -71 275 319 21 11 chr9 8900417 8900511 -108962116 + L2 LINE L2 2976 3070 -202 265 302 35 99 chr9 8900739 8900941 -108961686 + L2 LINE L2 2909 3097 -175 582 226 68 0 chr9 8901097 8901230 -108961397 + L1MA10 LINE L1 6192 6333 -1 2265 91 3 3 chr9 8901388 8901696 -108960931 + AluY SINE Alu 1 308 -3 2122 117 0 0 chr9 8902307 8902610 -108960017 - AluSg SINE Alu 0 303 1 2100 98 0 80 chr9 8904000 8904360 -108958267 + AluY SINE Alu 1 333 0 353 286 56 89 chr9 8907244 8907513 -108955114 - MIR SINE MIR -1 261 2 338 263 0 0 chr9 8907611 8907706 -108954921 + MIR SINE MIR 120 214 -48 1326 207 46 25 chr9 8907977 8908065 -108954562 + AluJo SINE Alu 1 86 -226 2064 94 33 0 chr9 8908065 8908370 -108954257 + AluSp SINE Alu 1 314 0 1326 207 46 25 chr9 8908370 8908560 -108954067 + AluJo SINE Alu 86 286 -26 22 56 0 0 chr9 8909172 8909208 -108953419 + AT_rich Low_complexity Low_complexity 1 36 0 180 0 0 0 chr9 8912188 8912208 -108950419 + (A)n Simple_repeat Simple_repeat 1 20 0 705 288 95 21 chr9 8912823 8913150 -108949477 + L2 LINE L2 2943 3293 -20 594 226 119 43 chr9 8913721 8913956 -108948671 + MIR SINE MIR 7 259 -3 498 91 0 0 chr9 8914493 8914570 -108948057 + (CA)n Simple_repeat Simple_repeat 2 78 0 276 344 139 35 chr9 8915448 8916018 -108946609 + L2 LINE L2 2045 2673 -641 624 233 38 88 chr9 8916019 8916281 -108946346 - MER112 DNA MER1_type 0 260 12 507 17 0 0 chr9 8916701 8916761 -108945866 + (CA)n Simple_repeat Simple_repeat 2 61 0 1077 80 98 18 chr9 8917319 8917482 -108945145 - MER30 DNA MER1_type -54 176 1 230 245 0 53 chr9 8918228 8918322 -108944305 + GA-rich Low_complexity Low_complexity 2 90 0 1778 108 0 15 chr9 8918796 8919056 -108943571 - AluSc SINE Alu -4 305 50 183 129 0 0 chr9 8920580 8920611 -108942016 + (A)n Simple_repeat Simple_repeat 1 31 0 306 50 0 0 chr9 8921079 8921119 -108941508 + (A)n Simple_repeat Simple_repeat 1 40 0 211 282 0 0 chr9 8921643 8921714 -108940913 + A-rich Low_complexity Low_complexity 1 71 0 230 217 0 0 chr9 8923361 8923407 -108939220 + L1MC4 LINE L1 6658 6703 -1339 2448 76 0 10 chr9 8925870 8926184 -108936443 + AluY SINE Alu 1 311 0 212 162 0 0 chr9 8926367 8926404 -108936223 + (TATG)n Simple_repeat Simple_repeat 2 38 0 749 289 47 16 chr9 8926997 8927250 -108935377 + MIR SINE MIR 2 262 0 205 356 0 0 chr9 8928247 8928334 -108934293 + MIR SINE MIR 160 246 -16 180 0 0 0 chr9 8928524 8928544 -108934083 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 450 79 0 0 chr9 8929393 8929456 -108933171 + (TG)n Simple_repeat Simple_repeat 2 64 0 1712 172 0 26 chr9 8930536 8930839 -108931788 + AluJo SINE Alu 6 300 -12 565 284 86 46 chr9 8930866 8931169 -108931458 - MER102b DNA MER1_type -8 333 19 242 239 14 0 chr9 8931540 8931611 -108931016 + (TA)n Simple_repeat Simple_repeat 1 72 0 1543 194 7 14 chr9 8931612 8931900 -108930727 - AluJb SINE Alu -26 286 1 21 0 0 0 chr9 8932007 8932028 -108930599 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr9 8932235 8932263 -108930364 + AT_rich Low_complexity Low_complexity 1 28 0 2027 145 49 25 chr9 8935291 8935657 -108926970 + THE1C LTR MaLR 1 375 0 393 258 88 57 chr9 8935671 8935865 -108926762 + MIR SINE MIR 39 238 -24 2147 195 28 11 chr9 8935951 8936408 -108926219 + MLT1C LTR MaLR 1 465 -2 341 239 146 23 chr9 8936412 8936542 -108926085 - MIR SINE MIR -83 179 34 1920 130 29 29 chr9 8937328 8937635 -108924992 - AluSx SINE Alu -5 307 1 430 286 29 0 chr9 8939181 8939387 -108923240 + MIR SINE MIR 49 229 -33 262 361 0 53 chr9 8940082 8940215 -108922412 + L2 LINE L2 3188 3313 0 247 369 0 0 chr9 8940936 8941020 -108921607 + L2 LINE L2 3188 3271 -42 28 48 0 0 chr9 8943351 8943393 -108919234 + AT_rich Low_complexity Low_complexity 1 42 0 219 235 20 0 chr9 8945105 8945156 -108917471 + GA-rich Low_complexity Low_complexity 4 55 0 336 200 0 0 chr9 8946780 8946850 -108915777 + A-rich Low_complexity Low_complexity 1 70 0 184 128 21 21 chr9 8946943 8946990 -108915637 + GA-rich Low_complexity Low_complexity 2 48 0 195 100 0 0 chr9 8947553 8947583 -108915044 + (TA)n Simple_repeat Simple_repeat 1 30 0 26 0 0 0 chr9 8947796 8947822 -108914805 + AT_rich Low_complexity Low_complexity 1 26 0 250 200 17 0 chr9 8949023 8949083 -108913544 + A-rich Low_complexity Low_complexity 1 61 0 824 65 0 0 chr9 8950325 8950432 -108912195 - L1PA5 LINE L1 -5 6149 6043 343 219 27 0 chr9 8955469 8955542 -108907085 - L2 LINE L2 -2 3311 3237 214 256 105 12 chr9 8955599 8955685 -108906942 + MIR SINE MIR 141 234 -28 349 198 23 0 chr9 8956922 8957008 -108905619 - L1MC4 LINE L1 -1339 6703 6616 32 57 0 0 chr9 8958791 8958844 -108903783 + AT_rich Low_complexity Low_complexity 1 53 0 1293 221 66 138 chr9 8959063 8960622 -108902005 + L1MC4 LINE L1 6539 7896 -146 1390 228 7 7 chr9 8961758 8962056 -108900571 - AluJb SINE Alu -11 301 4 605 210 14 22 chr9 8962058 8962196 -108900431 - FLAM_C SINE Alu -6 137 1 202 195 0 0 chr9 8962198 8962239 -108900388 + (TG)n Simple_repeat Simple_repeat 2 42 0 2133 135 3 0 chr9 8964236 8964539 -108898088 - AluSg SINE Alu -6 304 1 881 122 8 0 chr9 8964694 8964825 -108897802 - AluSx SINE Alu -9 303 172 543 107 12 12 chr9 8964825 8964909 -108897718 - AluSx SINE Alu -227 86 3 2042 136 3 3 chr9 8964997 8965298 -108897329 - AluSx SINE Alu -9 303 3 272 163 20 0 chr9 8965298 8965347 -108897280 + MADE1 DNA Mariner 30 79 -1 198 0 0 0 chr9 8965419 8965441 -108897186 + (T)n Simple_repeat Simple_repeat 1 22 0 2115 125 0 6 chr9 8967017 8967330 -108895297 - AluSx SINE Alu -1 311 1 203 167 0 0 chr9 8967852 8967888 -108894739 + GA-rich Low_complexity Low_complexity 2 37 0 1677 194 7 0 chr9 8967897 8968191 -108894436 + AluJb SINE Alu 6 301 -11 1902 152 3 3 chr9 8968900 8969197 -108893430 - AluSx SINE Alu -15 297 1 2483 68 13 0 chr9 8969211 8969518 -108893109 - AluSp SINE Alu 0 313 3 227 304 138 29 chr9 8969525 8969663 -108892964 - L2 LINE L2 -567 2747 2595 275 306 28 19 chr9 8970803 8970911 -108891716 + MIR SINE MIR 152 260 -2 242 231 19 0 chr9 8971982 8972034 -108890593 + CT-rich Low_complexity Low_complexity 3 55 0 286 100 0 80 chr9 8974187 8974237 -108888390 + U2 snRNA snRNA 1 46 -142 2183 103 0 4 chr9 8974436 8974741 -108887886 + AluSg SINE Alu 1 304 0 1427 182 50 12 chr9 8975664 8975922 -108886705 + AluJb SINE Alu 1 268 -44 213 268 0 0 chr9 8977824 8977865 -108884762 + L2 LINE L2 3215 3255 -17 213 39 0 0 chr9 8977961 8977987 -108884640 + (TA)n Simple_repeat Simple_repeat 2 27 0 2326 106 0 0 chr9 8977990 8978302 -108884325 + AluSx SINE Alu 1 312 0 342 67 0 0 chr9 8978309 8978354 -108884273 + (CA)n Simple_repeat Simple_repeat 2 46 0 222 235 0 0 chr9 8978354 8978405 -108884222 + (TA)n Simple_repeat Simple_repeat 2 52 0 984 203 83 0 chr9 8979681 8979922 -108882705 + L1MA4 LINE L1 6036 6296 -4 330 87 0 0 chr9 8980966 8981012 -108881615 + (CA)n Simple_repeat Simple_repeat 2 47 0 22 0 0 0 chr9 8981053 8981075 -108881552 + AT_rich Low_complexity Low_complexity 1 22 0 2337 206 28 29 chr9 8981473 8982134 -108880493 + LTR27 LTR ERV1 1 498 -138 22 35 0 0 chr9 8982353 8982382 -108880245 + AT_rich Low_complexity Low_complexity 1 29 0 1922 158 0 0 chr9 8982958 8983266 -108879361 - AluJb SINE Alu 0 308 1 714 219 63 15 chr9 8983322 8983527 -108879100 - L1M4 LINE L1 -1034 5112 4898 644 256 48 6 chr9 8983526 8983751 -108878876 + L1ME2 LINE L1 5756 5993 -177 * 465 186 21 0 chr9 8983800 8983897 -108878730 + L1MA10 LINE L1 6221 6319 -15 209 152 22 0 chr9 8983902 8983930 -108878697 + (CATATA)n Simple_repeat Simple_repeat 3 29 -20 1978 202 14 31 chr9 8983930 8983966 -108878661 + MER47B DNA MER2_type 1 36 -2287 1888 116 4 0 chr9 8983966 8984224 -108878403 - AluSg SINE Alu -11 299 41 1714 155 0 15 chr9 8984224 8984495 -108878132 - AluSx SINE Alu -45 267 1 1978 202 14 31 chr9 8984495 8984882 -108877745 + MER47B DNA MER2_type 34 418 0 209 152 22 0 chr9 8984882 8984899 -108877728 + (CATATA)n Simple_repeat Simple_repeat 29 49 0 1944 117 14 21 chr9 8984946 8985237 -108877390 + AluSx SINE Alu 1 289 -23 369 0 0 0 chr9 8986630 8986671 -108875956 + (TG)n Simple_repeat Simple_repeat 2 42 0 282 319 92 17 chr9 8987128 8987247 -108875380 + L2 LINE L2 3144 3271 -1 250 282 103 136 chr9 8987815 8988145 -108874482 + L2 LINE L2 2954 3272 0 22 35 0 0 chr9 8988641 8988670 -108873957 + AT_rich Low_complexity Low_complexity 1 29 0 212 345 84 21 chr9 8992504 8992646 -108869981 + MIR3 SINE MIR 33 183 -25 23 0 0 0 chr9 8994653 8994676 -108867951 + AT_rich Low_complexity Low_complexity 1 23 0 180 306 69 69 chr9 8996162 8996234 -108866393 - L2 LINE L2 0 3313 3242 241 272 7 110 chr9 8997543 8997582 -108865045 + L2 LINE L2 2938 2979 -293 2170 95 3 3 chr9 8997582 8997912 -108864715 - AluSp SINE Alu 0 330 1 241 272 7 110 chr9 8997912 8998007 -108864620 + L2 LINE L2 2979 3059 -213 933 197 16 16 chr9 8998084 8998272 -108864355 + MER5A DNA MER1_type 1 188 -1 343 346 58 6 chr9 8999829 8999985 -108862642 - L2 LINE L2 -1 3271 3108 463 322 64 35 chr9 9001502 9001816 -108860811 + L1ME LINE L1 2979 3301 -2845 2346 90 3 0 chr9 9001824 9002125 -108860502 + AluY SINE Alu 1 302 -9 270 116 0 0 chr9 9002125 9002168 -108860459 + (GGGGA)n Simple_repeat Simple_repeat 1 43 0 462 188 111 8 chr9 9002170 9002287 -108860340 + FLAM_C SINE Alu 5 133 0 438 273 108 45 chr9 9002550 9002884 -108859743 + L1ME LINE L1 4905 5259 -887 444 285 57 44 chr9 9002910 9003398 -108859229 + L1ME LINE L1 5312 5803 -367 1739 141 4 15 chr9 9003418 9003680 -108858947 - MER1B DNA MER1_type -80 259 1 627 197 0 53 chr9 9003709 9003841 -108858786 - FLAM_A SINE Alu -8 125 1 1851 174 0 7 chr9 9004227 9004515 -108858112 + AluJb SINE Alu 1 286 -26 32 26 0 0 chr9 9004515 9004554 -108858073 + AT_rich Low_complexity Low_complexity 1 39 0 2572 121 3 5 chr9 9005078 9005449 -108857178 - THE1C LTR MaLR 0 375 6 23 33 0 0 chr9 9005640 9005670 -108856957 + AT_rich Low_complexity Low_complexity 1 30 0 257 313 80 0 chr9 9006115 9006227 -108856400 - MIR SINE MIR -21 241 121 28 0 0 26 chr9 9006358 9006377 -108856250 + AT_rich Low_complexity Low_complexity 1 19 -19 1997 133 3 0 chr9 9006377 9006662 -108855965 + AluSg SINE Alu 1 286 -24 28 0 0 26 chr9 9006662 9006681 -108855946 + AT_rich Low_complexity Low_complexity 19 38 0 25 51 0 0 chr9 9007117 9007156 -108855471 + AT_rich Low_complexity Low_complexity 1 39 0 2234 102 0 10 chr9 9007223 9007536 -108855091 + AluY SINE Alu 1 310 -1 24 32 0 0 chr9 9007672 9007703 -108854924 + AT_rich Low_complexity Low_complexity 1 31 0 298 324 29 0 chr9 9009215 9009317 -108853310 + MER5A DNA MER1_type 40 144 -45 1739 194 35 78 chr9 9011160 9011682 -108850945 - MLT1D LTR MaLR -3 502 4 219 375 94 31 chr9 9013178 9013434 -108849193 - L2 LINE L2 -184 3088 2817 206 247 143 137 chr9 9014367 9014549 -108848078 - L3 LINE CR1 -130 1447 1265 1921 127 69 30 chr9 9014846 9015207 -108847420 + THE1C LTR MaLR 1 375 0 2314 96 0 3 chr9 9015218 9015520 -108847107 - AluY SINE Alu -10 301 1 218 289 0 21 chr9 9017840 9017937 -108844690 + A-rich Low_complexity Low_complexity 2 96 0 22 0 0 0 chr9 9018220 9018242 -108844385 + AT_rich Low_complexity Low_complexity 1 22 0 1816 110 8 34 chr9 9018560 9018856 -108843771 + AluSx SINE Alu 34 322 0 2452 137 0 0 chr9 9019315 9019679 -108842948 + THE1B LTR MaLR 1 364 0 2241 82 26 7 chr9 9019971 9020275 -108842352 - AluSp SINE Alu -3 310 1 9674 193 25 6 chr9 9020285 9022051 -108840576 + L1M1 LINE L1 111 1911 -5654 21 0 0 0 chr9 9022885 9022906 -108839721 + AT_rich Low_complexity Low_complexity 1 21 0 259 254 132 35 chr9 9024436 9024550 -108838077 - L2 LINE L2 -6 3307 3183 339 355 74 31 chr9 9025027 9025283 -108837344 - L2 LINE L2 -757 2557 2291 382 307 106 5 chr9 9025892 9026081 -108836546 + MIR SINE MIR 49 256 -6 186 43 0 0 chr9 9026295 9026318 -108836309 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 1361 166 73 7 chr9 9027365 9027667 -108834960 + L1MA8 LINE L1 5964 6285 -6 2098 126 0 7 chr9 9027720 9028022 -108834605 + AluSg SINE Alu 1 300 -10 24 0 0 0 chr9 9029993 9030017 -108832610 + AT_rich Low_complexity Low_complexity 1 24 0 269 321 18 18 chr9 9030323 9030432 -108832195 + MIR SINE MIR 98 206 -56 423 242 87 60 chr9 9030544 9030693 -108831934 + MIR SINE MIR 109 261 -1 264 333 65 24 chr9 9030706 9030829 -108831798 - MIR3 SINE MIR -72 136 9 1825 166 6 13 chr9 9031780 9032094 -108830533 + AluJb SINE Alu 1 312 0 349 221 19 10 chr9 9032094 9032198 -108830429 + GA-rich Low_complexity Low_complexity 5 109 0 260 45 68 0 chr9 9032284 9032328 -108830299 + A-rich Low_complexity Low_complexity 1 47 0 * 270 125 0 0 chr9 9032326 9032374 -108830253 + (GGGGA)n Simple_repeat Simple_repeat 4 51 0 285 51 0 0 chr9 9032460 9032499 -108830128 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 429 304 88 21 chr9 9033930 9034124 -108828503 - L3 LINE CR1 -106 1471 1265 640 255 76 0 chr9 9034547 9034692 -108827935 - MER82 DNA MER2_type -25 628 473 1723 163 0 72 chr9 9039058 9039224 -108823403 - AluSx SINE Alu -16 296 162 303 49 0 0 chr9 9039224 9039265 -108823362 + (TG)n Simple_repeat Simple_repeat 2 42 0 1723 163 0 72 chr9 9039265 9039417 -108823210 - AluSx SINE Alu -150 162 1 1795 176 35 23 chr9 9039422 9039853 -108822774 - L1MA8 LINE L1 0 6291 5856 459 289 28 0 chr9 9041372 9041514 -108821113 - MER69 DNA AcHobo -2380 146 1 28 48 0 0 chr9 9041732 9041774 -108820853 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr9 9042320 9042341 -108820286 + AT_rich Low_complexity Low_complexity 1 21 0 231 296 112 40 chr9 9042911 9043036 -108819591 + L2 LINE L2 3139 3272 0 1380 197 10 48 chr9 9043214 9043523 -108819104 + AluJo SINE Alu 1 297 -15 270 274 147 0 chr9 9043524 9043619 -108819008 - L2 LINE L2 -13 3300 3192 220 224 0 0 chr9 9043918 9043967 -108818660 + (TAA)n Simple_repeat Simple_repeat 1 49 0 439 346 87 9 chr9 9043970 9044201 -108818426 - MIR SINE MIR 0 262 14 327 200 50 0 chr9 9044812 9044872 -108817755 - L2 LINE L2 -16 3256 3194 297 328 94 18 chr9 9044930 9045101 -108817526 - MIR SINE MIR -6 256 73 254 244 204 35 chr9 9045367 9045539 -108817088 - L2 LINE L2 -5 3308 3108 249 175 16 32 chr9 9045540 9045603 -108817024 + (CATATA)n Simple_repeat Simple_repeat 1 62 0 1203 249 97 45 chr9 9046821 9047315 -108815312 + MLT2B1 LTR ERVL 1 520 0 352 289 33 25 chr9 9047686 9047807 -108814820 + MIR3 SINE MIR 79 200 -8 28 0 0 0 chr9 9047858 9047886 -108814741 + AT_rich Low_complexity Low_complexity 1 28 0 202 340 41 31 chr9 9048984 9049081 -108813546 - MIR SINE MIR -78 130 33 354 23 0 0 chr9 9052479 9052522 -108810105 + (TG)n Simple_repeat Simple_repeat 2 44 0 316 300 0 18 chr9 9055273 9055383 -108807244 - L2 LINE L2 -16 3297 3190 213 66 115 0 chr9 9055389 9055450 -108807177 + (TA)n Simple_repeat Simple_repeat 2 69 0 29 60 0 0 chr9 9055770 9055820 -108806807 + AT_rich Low_complexity Low_complexity 1 50 0 432 359 32 14 chr9 9056499 9056719 -108805908 + MLT1K LTR MaLR 23 246 -342 273 298 72 53 chr9 9058001 9058263 -108804364 + L1ME4a LINE L1 5637 5903 -218 23 0 0 0 chr9 9058461 9058484 -108804143 + AT_rich Low_complexity Low_complexity 1 23 0 2155 104 0 0 chr9 9059183 9059498 -108803129 - AluSc SINE Alu 0 315 1 1571 197 7 0 chr9 9060289 9060579 -108802048 - AluJb SINE Alu -13 299 8 671 115 0 26 chr9 9060627 9060740 -108801887 + AluSp/q SINE Alu 204 313 0 234 81 0 0 chr9 9060904 9060941 -108801686 + (A)n Simple_repeat Simple_repeat 1 37 0 25 31 0 0 chr9 9061038 9061070 -108801557 + AT_rich Low_complexity Low_complexity 1 32 0 356 86 0 17 chr9 9063700 9063758 -108798869 + (GGAA)n Simple_repeat Simple_repeat 4 60 0 6085 183 38 71 chr9 9063953 9065356 -108797271 + MER52A LTR ERV1 399 1755 0 237 261 0 15 chr9 9065977 9066042 -108796585 + GA-rich Low_complexity Low_complexity 1 64 0 339 268 84 106 chr9 9066366 9066545 -108796082 + MER5B DNA MER1_type 4 178 0 229 351 77 36 chr9 9066851 9067019 -108795608 + L2 LINE L2 2918 3092 -180 373 248 97 31 chr9 9067884 9068110 -108794517 - L1ME LINE L1 -364 5757 5517 1629 180 7 0 chr9 9070273 9070556 -108792071 - AluJo SINE Alu -16 296 12 2259 81 17 10 chr9 9070737 9071035 -108791592 + AluSp SINE Alu 4 303 -10 764 194 90 0 chr9 9074481 9074636 -108787991 - MER20 DNA MER1_type -19 200 32 359 267 87 52 chr9 9076589 9076761 -108785866 + MER5A DNA MER1_type 8 185 -4 844 274 202 13 chr9 9076954 9077330 -108785297 + MER69 DNA AcHobo 1 447 -2079 424 254 42 0 chr9 9077310 9077428 -108785199 + MER69 DNA AcHobo 1917 2039 -487 * 1729 101 26 38 chr9 9077495 9077652 -108784975 - L1P4 LINE L1 -697 5477 5320 2371 95 0 3 chr9 9077652 9077956 -108784671 - AluSq SINE Alu -10 303 1 1729 101 26 38 chr9 9077956 9078218 -108784409 - L1P4 LINE L1 -854 5320 5058 21 36 0 0 chr9 9078416 9078444 -108784183 + AT_rich Low_complexity Low_complexity 1 28 0 193 200 60 0 chr9 9081486 9081536 -108781091 - MIR SINE MIR -93 169 117 258 156 0 0 chr9 9082403 9082448 -108780179 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 516 270 0 0 chr9 9082448 9082559 -108780068 - FLAM_A SINE Alu -22 120 10 279 0 0 0 chr9 9082791 9082822 -108779805 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2100 127 3 3 chr9 9083971 9084278 -108778349 - AluSx SINE Alu -5 307 1 2257 108 0 0 chr9 9087544 9087849 -108774778 + AluSq SINE Alu 1 305 -8 1354 148 44 109 chr9 9087917 9088242 -108774385 + MER46B DNA MER2_type 3 176 -2555 188 0 74 0 chr9 9088242 9088269 -108774358 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 1354 148 44 109 chr9 9088269 9088327 -108774300 + MER46B DNA MER2_type 176 236 0 270 154 0 0 chr9 9088391 9088430 -108774197 + MER57A LTR ERV1 295 333 -70 27 0 0 0 chr9 9088432 9088459 -108774168 + AT_rich Low_complexity Low_complexity 1 27 0 503 283 21 26 chr9 9090654 9090845 -108771782 - L1MA9 LINE L1 -173 6139 5950 323 148 0 0 chr9 9090911 9090965 -108771662 - L1MA9 LINE L1 -375 5937 5884 22 0 0 0 chr9 9091719 9091741 -108770886 + AT_rich Low_complexity Low_complexity 1 22 0 921 204 0 52 chr9 9094275 9094505 -108768122 - MER20 DNA MER1_type -1 218 1 2324 85 0 0 chr9 9094677 9094971 -108767656 + AluSc SINE Alu 13 306 -3 396 286 111 20 chr9 9095662 9095861 -108766766 + MIR SINE MIR 44 260 -2 236 98 0 24 chr9 9095983 9096024 -108766603 + (CA)n Simple_repeat Simple_repeat 2 41 0 225 0 0 0 chr9 9096026 9096051 -108766576 + (A)n Simple_repeat Simple_repeat 1 25 0 1147 147 5 0 chr9 9096860 9097044 -108765583 - AluSq SINE Alu -2 311 127 2197 87 13 13 chr9 9097049 9097361 -108765266 - AluSp SINE Alu -1 312 1 2822 139 23 12 chr9 9097686 9098167 -108764460 + L1PA15 LINE L1 5673 6158 -7 25 51 0 0 chr9 9100610 9100649 -108761978 + AT_rich Low_complexity Low_complexity 1 39 0 375 268 12 24 chr9 9101053 9101221 -108761406 + (CATATA)n Simple_repeat Simple_repeat 3 168 0 242 138 447 0 chr9 9102870 9102964 -108759663 + L1MA4 LINE L1 6164 6299 -1 23 33 0 0 chr9 9103023 9103053 -108759574 + AT_rich Low_complexity Low_complexity 1 30 0 711 246 65 98 chr9 9104132 9104702 -108757925 + MLT1G LTR MaLR 40 590 0 415 284 168 10 chr9 9104752 9104949 -108757678 - MIR SINE MIR -27 235 8 26 0 0 0 chr9 9106317 9106343 -108756284 + AT_rich Low_complexity Low_complexity 1 26 0 360 329 64 7 chr9 9107010 9107150 -108755477 - MIR SINE MIR -78 184 37 2441 73 3 0 chr9 9108770 9109073 -108753554 + AluY SINE Alu 1 304 -7 294 230 23 46 chr9 9109299 9109386 -108753241 + MIR3 SINE MIR 118 202 -6 29 0 0 0 chr9 9109690 9109719 -108752908 + AT_rich Low_complexity Low_complexity 1 29 0 2266 120 20 3 chr9 9109854 9110203 -108752424 - THE1A LTR MaLR 0 355 1 2043 150 3 10 chr9 9110311 9110624 -108752003 + AluSx SINE Alu 1 311 -1 2135 117 0 7 chr9 9110731 9111030 -108751597 + AluY SINE Alu 1 297 -14 267 217 23 132 chr9 9111832 9111961 -108750666 + MER117 DNA MER1_type 57 171 -26 516 268 108 10 chr9 9112691 9112885 -108749742 - MLT1J2 LTR MaLR -15 435 223 339 302 19 38 chr9 9114626 9114785 -108747842 + L1M4 LINE L1 3339 3494 -2652 769 292 110 25 chr9 9115404 9115876 -108746751 - MLT1L LTR MaLR -2 613 102 269 303 193 29 chr9 9116826 9117100 -108745527 - L2 LINE L2 0 3313 2995 246 330 18 18 chr9 9117158 9117270 -108745357 - L2 LINE L2 -446 2868 2757 26 0 0 0 chr9 9117873 9117899 -108744728 + AT_rich Low_complexity Low_complexity 1 26 0 2310 114 0 3 chr9 9117903 9118209 -108744418 - AluSx SINE Alu -7 305 1 252 100 0 0 chr9 9118228 9118268 -108744359 + (TG)n Simple_repeat Simple_repeat 2 41 0 27 0 0 0 chr9 9119412 9119439 -108743188 + AT_rich Low_complexity Low_complexity 1 27 0 2179 96 0 0 chr9 9121387 9121658 -108740969 + AluSg SINE Alu 22 292 -18 2174 83 0 7 chr9 9121838 9122126 -108740501 + AluSp SINE Alu 1 286 -27 246 132 0 0 chr9 9122889 9122927 -108739700 - L2 LINE L2 -4 3268 3231 2165 76 21 14 chr9 9123101 9123392 -108739235 - AluSg SINE Alu -17 293 1 1257 308 78 54 chr9 9123829 9124625 -108738002 + L2 LINE L2 1795 2609 -705 325 258 0 22 chr9 9124820 9124909 -108737718 + GA-rich Low_complexity Low_complexity 2 88 0 1490 113 66 51 chr9 9125180 9125437 -108737190 + AluSg SINE Alu 49 309 -1 1096 116 24 0 chr9 9125716 9125880 -108736747 - AluSg/x SINE Alu -19 293 126 3972 161 19 48 chr9 9128708 9128877 -108733750 + L1MA8 LINE L1 5442 5614 -677 2360 96 0 16 chr9 9128877 9129190 -108733437 + AluSq SINE Alu 1 308 -5 3972 161 19 48 chr9 9129190 9129718 -108732909 + L1MA8 LINE L1 5614 6112 -179 2458 84 0 3 chr9 9129718 9130029 -108732598 + AluY SINE Alu 1 310 -1 3972 161 19 48 chr9 9130029 9130203 -108732424 + L1MA8 LINE L1 6112 6289 -2 431 312 89 46 chr9 9130387 9130624 -108732003 + MIR SINE MIR 13 259 -3 1972 153 3 0 chr9 9130820 9131121 -108731506 + AluJb SINE Alu 1 302 -10 24 32 0 0 chr9 9131782 9131813 -108730814 + AT_rich Low_complexity Low_complexity 1 31 0 364 277 23 39 chr9 9132073 9132203 -108730424 - MER5B DNA MER1_type 0 178 51 725 227 305 32 chr9 9132258 9132756 -108729871 + L1MC3 LINE L1 5684 6317 -1468 2257 71 0 4 chr9 9133223 9133504 -108729123 - AluSq SINE Alu -33 280 1 237 33 0 0 chr9 9134792 9134822 -108727805 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 837 230 56 136 chr9 9135034 9135482 -108727145 + L2 LINE L2 2852 3263 -50 21 0 0 0 chr9 9135950 9135971 -108726656 + AT_rich Low_complexity Low_complexity 1 21 0 367 336 9 9 chr9 9135971 9136087 -108726540 - MIR SINE MIR -144 118 3 272 75 0 0 chr9 9136582 9136622 -108726005 + MADE1 DNA Mariner 41 80 0 269 333 115 10 chr9 9137109 9137301 -108725326 + MER102b DNA MER1_type 105 316 -25 1077 190 109 16 chr9 9137402 9137649 -108724978 + AluJb SINE Alu 34 303 -9 302 354 104 17 chr9 9137847 9138087 -108724540 + L2 LINE L2 2496 2756 -558 354 345 53 18 chr9 9138088 9138259 -108724368 - MER5B DNA MER1_type -1 177 1 933 239 52 0 chr9 9140030 9140243 -108722384 + MER58A DNA MER1_type 1 224 0 201 74 0 0 chr9 9140333 9140360 -108722267 + (A)n Simple_repeat Simple_repeat 1 27 0 565 288 96 34 chr9 9140482 9140991 -108721636 - MLT1H LTR MaLR 0 555 1 21 0 0 0 chr9 9141524 9141545 -108721082 + AT_rich Low_complexity Low_complexity 1 21 0 2159 139 0 3 chr9 9141632 9141941 -108720686 + AluSx SINE Alu 1 308 -4 40 49 0 0 chr9 9141994 9142055 -108720572 + AT_rich Low_complexity Low_complexity 1 61 0 479 326 78 10 chr9 9142071 9142264 -108720363 - MIR SINE MIR 0 262 57 345 161 37 25 chr9 9142427 9142508 -108720119 + MER20 DNA MER1_type 1 82 -137 387 0 0 0 chr9 9142609 9142652 -108719975 + (TG)n Simple_repeat Simple_repeat 2 44 0 314 281 52 85 chr9 9143638 9143908 -108718719 + L2 LINE L2 2883 3143 -170 189 330 70 62 chr9 9144868 9145126 -108717501 + L2 LINE L2 2563 2822 -492 1594 172 0 14 chr9 9145154 9145433 -108717194 + AluJb SINE Alu 17 291 -21 754 200 16 11 chr9 9145466 9145656 -108716971 + L1MC4a LINE L1 7618 7808 0 22 35 0 0 chr9 9145760 9145789 -108716838 + AT_rich Low_complexity Low_complexity 1 29 0 345 342 17 8 chr9 9145796 9145913 -108716714 + L2 LINE L2 3189 3306 -7 601 313 84 13 chr9 9146107 9146334 -108716293 - MIR SINE MIR 0 262 20 363 73 0 0 chr9 9146496 9146551 -108716076 + (CA)n Simple_repeat Simple_repeat 2 56 0 909 120 15 0 chr9 9146791 9146924 -108715703 + AluJb SINE Alu 1 135 -177 417 109 0 0 chr9 9147069 9147133 -108715494 + (TA)n Simple_repeat Simple_repeat 2 65 0 1322 155 3 123 chr9 9147137 9147479 -108715148 + AluJo SINE Alu 2 302 0 770 219 26 0 chr9 9148117 9148304 -108714323 - AluJo SINE Alu 0 319 129 501 82 0 12 chr9 9148311 9148396 -108714231 - L1MB8 LINE L1 -2 6176 6093 2280 91 0 7 chr9 9148529 9148826 -108713801 + AluSp SINE Alu 1 295 -18 807 171 0 0 chr9 9148937 9149060 -108713567 - AluJo SINE Alu -188 124 2 2044 128 7 0 chr9 9149266 9149556 -108713071 + AluSx SINE Alu 6 297 -15 189 159 159 45 chr9 9150024 9150068 -108712559 + L2 LINE L2 3216 3264 -8 438 284 28 103 chr9 9150086 9150368 -108712259 - MIR SINE MIR 0 262 2 2458 72 0 0 chr9 9150538 9150844 -108711783 + AluY SINE Alu 1 306 -5 197 135 0 27 chr9 9155201 9155238 -108707389 - L2 LINE L2 -13 3300 3265 343 254 36 18 chr9 9155570 9155680 -108706947 - MER5A DNA MER1_type -7 182 71 2065 155 7 0 chr9 9155697 9156007 -108706620 - AluSx SINE Alu 0 312 1 467 118 15 0 chr9 9156051 9156119 -108706508 - MER5A DNA MER1_type -116 73 5 2177 122 3 7 chr9 9156191 9156495 -108706132 + AluSx SINE Alu 1 303 -9 2057 124 0 7 chr9 9158221 9158512 -108704115 - AluSg SINE Alu -21 289 1 689 245 32 68 chr9 9158979 9159333 -108703294 + L1MC5 LINE L1 6730 7050 -911 677 183 167 6 chr9 9159917 9160097 -108702530 + MER3 DNA MER1_type 1 209 0 2018 133 98 21 chr9 9160274 9160612 -108702015 + THE1B LTR MaLR 1 364 0 268 159 0 0 chr9 9160695 9160739 -108701888 + 5S rRNA rRNA 1 44 -77 2202 129 0 22 chr9 9162135 9162452 -108700175 - AluSg SINE Alu 0 310 1 708 158 44 27 chr9 9162789 9162972 -108699655 - L1MA8 LINE L1 0 6291 6106 602 250 17 28 chr9 9163451 9163627 -108699000 + MER20 DNA MER1_type 46 219 0 5858 119 15 18 chr9 9164134 9164355 -108698272 + L1PB1 LINE L1 4958 5178 -973 339 25 0 0 chr9 9164355 9164395 -108698232 + (TAA)n Simple_repeat Simple_repeat 2 41 0 5858 119 15 18 chr9 9164395 9165369 -108697258 + L1PB1 LINE L1 5178 6150 -1 250 342 71 27 chr9 9165674 9165858 -108696769 - MIR3 SINE MIR -1 207 16 261 0 0 0 chr9 9166348 9166377 -108696250 + (TC)n Simple_repeat Simple_repeat 2 30 0 1550 185 18 4 chr9 9166377 9166653 -108695974 - AluJo SINE Alu -28 284 5 828 169 0 0 chr9 9167275 9167405 -108695222 + FLAM_C SINE Alu 1 130 -3 4940 70 9 0 chr9 9167787 9168449 -108694178 + HERV17 LTR ERV1 5352 6019 -2607 285 51 0 0 chr9 9168442 9168481 -108694146 + HERV17 LTR ERV1 7510 7548 -1078 * 2229 52 10 0 chr9 9168471 9168760 -108693867 + HERV17 LTR ERV1 8335 8626 0 2392 40 28 31 chr9 9168760 9169087 -108693540 + LTR17 LTR ERV1 1 326 -454 255 125 0 0 chr9 9169087 9169127 -108693500 + (A)n Simple_repeat Simple_repeat 1 40 0 1795 166 3 7 chr9 9169193 9169489 -108693138 + AluSp SINE Alu 1 295 -18 242 168 74 11 chr9 9169573 9169668 -108692959 - Charlie7 DNA MER1_type -74 2538 2438 2000 136 3 23 chr9 9169742 9170052 -108692575 - AluSx SINE Alu -6 306 3 2144 115 0 0 chr9 9170404 9170692 -108691935 - AluSx SINE Alu -24 288 1 421 301 113 58 chr9 9170715 9171167 -108691460 - L2 LINE L2 -175 3138 2653 201 74 0 0 chr9 9171637 9171664 -108690963 + (A)n Simple_repeat Simple_repeat 1 27 0 883 254 53 82 chr9 9172111 9172312 -108690315 + MLT1H LTR MaLR 64 269 -280 4445 59 0 4 chr9 9172312 9172868 -108689759 + MER41A LTR ERV1 1 554 0 883 254 53 82 chr9 9172868 9173167 -108689460 + MLT1H LTR MaLR 269 549 0 1678 250 69 30 chr9 9173938 9174097 -108688530 + L1ME LINE L1 4381 4532 -1614 2193 107 0 0 chr9 9174097 9174387 -108688240 + AluSx SINE Alu 1 290 -22 1678 250 69 30 chr9 9174387 9175058 -108687569 + L1ME LINE L1 4532 5243 -903 878 273 92 30 chr9 9175122 9175482 -108687145 + L1ME LINE L1 5325 5722 -448 2329 91 3 0 chr9 9175482 9175780 -108686847 + AluSq SINE Alu 1 299 -14 878 273 92 30 chr9 9175780 9175885 -108686742 + L1ME LINE L1 5722 5819 -351 278 257 73 37 chr9 9176360 9176469 -108686158 + MIR SINE MIR 17 129 -79 212 279 39 84 chr9 9176444 9176598 -108686029 + L2 LINE L2 3081 3227 -86 * 907 169 46 62 chr9 9177048 9177243 -108685384 + AluJb SINE Alu 117 308 -4 2044 135 0 0 chr9 9177453 9177734 -108684893 - AluSx SINE Alu -31 281 1 1531 198 7 7 chr9 9177797 9178090 -108684537 + AluJb SINE Alu 1 293 -19 336 274 161 0 chr9 9178665 9178789 -108683838 - MIR SINE MIR -70 192 49 526 141 0 0 chr9 9179072 9179150 -108683477 + AluSg/x SINE Alu 207 284 -26 482 119 12 0 chr9 9179609 9179693 -108682934 + (TA)n Simple_repeat Simple_repeat 1 85 0 868 201 46 0 chr9 9180205 9180399 -108682228 - MER105 DNA DNA -1 203 1 500 65 0 0 chr9 9180766 9180828 -108681799 - AluY SINE Alu -16 296 235 1306 81 0 0 chr9 9180829 9180989 -108681638 - AluY SINE Alu -151 160 1 1659 169 0 72 chr9 9181037 9181356 -108681271 - AluJb SINE Alu -16 296 1 214 244 0 47 chr9 9181598 9181684 -108680943 + T-rich Low_complexity Low_complexity 1 82 0 985 114 0 0 chr9 9182062 9182194 -108680433 - AluSx SINE Alu -139 173 42 273 29 0 0 chr9 9182599 9182633 -108679994 + (TG)n Simple_repeat Simple_repeat 1 34 0 2132 117 3 3 chr9 9184191 9184491 -108678136 + AluSx SINE Alu 1 300 -12 198 0 0 0 chr9 9185598 9185620 -108677007 + (T)n Simple_repeat Simple_repeat 1 22 0 26 0 0 0 chr9 9185810 9185836 -108676791 + AT_rich Low_complexity Low_complexity 1 26 0 267 365 19 10 chr9 9185919 9186023 -108676604 + MER5A DNA MER1_type 72 176 -13 184 280 227 8 chr9 9186129 9186261 -108676366 - MIR3 SINE MIR -11 197 37 222 281 61 24 chr9 9186492 9186574 -108676053 - MIR SINE MIR -115 147 63 295 211 14 0 chr9 9187766 9187837 -108674790 - Charlie8 DNA MER1_type -2272 145 74 338 289 13 39 chr9 9187995 9188151 -108674476 - LTR16C LTR ERVL -244 247 96 192 238 0 0 chr9 9189374 9189437 -108673190 + (TA)n Simple_repeat Simple_repeat 1 63 0 454 391 55 19 chr9 9189963 9190385 -108672242 + L3 LINE CR1 284 720 -857 1233 180 0 21 chr9 9190569 9190808 -108671819 - AluJo SINE Alu -78 234 1 292 301 159 51 chr9 9191071 9191247 -108671380 + L2 LINE L2 3068 3262 -10 194 277 15 46 chr9 9193504 9193569 -108669058 - L2 LINE L2 -37 3276 3214 993 168 19 93 chr9 9194552 9194766 -108667861 + AluJo SINE Alu 85 282 -30 27 100 0 0 chr9 9195408 9195498 -108667129 + AT_rich Low_complexity Low_complexity 1 90 0 1969 150 3 7 chr9 9196207 9196501 -108666126 + AluSx SINE Alu 1 293 -19 210 167 37 19 chr9 9196517 9196571 -108666056 + (TATAA)n Simple_repeat Simple_repeat 3 57 0 1909 137 18 0 chr9 9197493 9197813 -108664814 + AluSg SINE Alu 1 325 0 1644 201 67 93 chr9 9198138 9198720 -108663907 + MLT1F1 LTR MaLR 1 567 0 323 319 37 37 chr9 9198757 9198920 -108663707 + MIR3 SINE MIR 14 176 -32 193 277 12 72 chr9 9199063 9199108 -108663519 + L3 LINE CR1 1497 1536 -41 4586 164 33 9 chr9 9199108 9199953 -108662674 + MER6 DNA MER2_type 1 865 0 193 277 12 72 chr9 9199953 9199990 -108662637 + L3 LINE CR1 1536 1574 -3 2366 94 3 0 chr9 9200095 9200393 -108662234 - AluSq SINE Alu -13 300 2 329 319 76 14 chr9 9200397 9200541 -108662086 + L1MC/D LINE L1 5607 5759 -2049 696 203 21 112 chr9 9200625 9200812 -108661815 + MER5B DNA MER1_type 8 177 -1 816 199 0 53 chr9 9201094 9201265 -108661362 + AluJo SINE Alu 5 166 -146 1623 167 7 14 chr9 9201266 9201542 -108661085 + AluJb SINE Alu 21 294 -18 22 0 0 0 chr9 9202096 9202118 -108660509 + AT_rich Low_complexity Low_complexity 1 22 0 2116 115 3 13 chr9 9202976 9203290 -108659337 + AluSx SINE Alu 1 311 -1 2357 66 0 7 chr9 9203876 9204163 -108658464 + AluY SINE Alu 2 286 -25 21 0 0 0 chr9 9204473 9204494 -108658133 + AT_rich Low_complexity Low_complexity 1 21 0 887 68 38 8 chr9 9204632 9204764 -108657863 + L1MA3 LINE L1 6169 6304 -1 225 0 0 0 chr9 9204793 9204818 -108657809 + (CAA)n Simple_repeat Simple_repeat 2 26 0 3462 225 40 67 chr9 9204856 9205072 -108657555 - L1MEc LINE L1 -5243 1153 933 1518 164 25 0 chr9 9205072 9205316 -108657311 + AluJo SINE Alu 50 299 -13 3462 225 40 67 chr9 9205316 9206248 -108656379 - L1MEc LINE L1 -5463 933 36 367 354 76 8 chr9 9206248 9206590 -108656037 + L2 LINE L2 2688 3051 -221 222 170 208 0 chr9 9206753 9206806 -108655821 + MIR SINE MIR 88 151 -111 2544 65 3 0 chr9 9207184 9207490 -108655137 - AluSp SINE Alu -6 307 1 427 159 0 0 chr9 9208243 9208312 -108654315 - L1PA16 LINE L1 -9 6157 6089 892 142 0 0 chr9 9208358 9208485 -108654142 + FLAM_C SINE Alu 1 127 -16 1611 176 38 3 chr9 9208959 9209248 -108653379 - AluJb SINE Alu -13 299 1 417 116 64 23 chr9 9209448 9209621 -108653006 + (TA)n Simple_repeat Simple_repeat 1 180 0 1514 136 31 19 chr9 9209642 9209900 -108652727 - AluJb SINE Alu -15 297 37 488 325 12 0 chr9 9211392 9211561 -108651066 + MIR SINE MIR 66 236 -26 704 136 179 0 chr9 9214830 9214992 -108647635 - L1MA8 LINE L1 -22 6269 6079 899 108 7 0 chr9 9214994 9215133 -108647494 - L1MA8 LINE L1 -131 6160 6021 2309 84 7 7 chr9 9215253 9215552 -108647075 - AluSg SINE Alu -11 299 1 409 326 54 33 chr9 9216095 9216279 -108646348 - MIR SINE MIR -26 236 49 333 0 0 0 chr9 9218714 9218751 -108643876 + (TG)n Simple_repeat Simple_repeat 2 38 0 2282 96 0 16 chr9 9219080 9219393 -108643234 - AluSx SINE Alu -2 310 3 325 151 0 0 chr9 9219591 9219644 -108642983 - AluJo SINE Alu -8 294 242 1146 139 12 6 chr9 9219644 9219816 -108642811 - AluJo SINE Alu -139 173 1 257 237 26 26 chr9 9219831 9219907 -108642720 - MARNA DNA Mariner -51 535 460 256 275 0 46 chr9 9220300 9220409 -108642218 + GA-rich Low_complexity Low_complexity 4 107 0 2428 75 3 28 chr9 9220935 9221255 -108641372 - AluSp SINE Alu -1 312 1 418 231 74 133 chr9 9221553 9221756 -108640871 - MIR SINE MIR 0 262 72 26 30 0 0 chr9 9222469 9222502 -108640125 + AT_rich Low_complexity Low_complexity 1 33 0 2060 121 7 0 chr9 9222524 9222813 -108639814 + AluSx SINE Alu 1 291 -21 516 284 35 12 chr9 9223326 9223495 -108639132 - MIR SINE MIR -74 188 16 26 50 0 0 chr9 9223553 9223593 -108639034 + AT_rich Low_complexity Low_complexity 1 40 0 246 32 0 0 chr9 9224418 9224449 -108638178 + (TC)n Simple_repeat Simple_repeat 1 31 0 2148 93 4 0 chr9 9224827 9225105 -108637522 - AluSg1 SINE Alu -30 279 1 373 264 24 16 chr9 9225831 9225954 -108636673 - MIR SINE MIR -78 130 30 211 285 98 24 chr9 9226035 9226158 -108636469 + L2 LINE L2 2629 2760 -554 464 319 109 22 chr9 9226240 9226597 -108636030 + L2 LINE L2 1983 2370 -944 990 143 22 28 chr9 9226619 9226801 -108635826 + AluJb SINE Alu 108 288 -24 267 20 0 78 chr9 9226802 9226853 -108635774 + (GGAAA)n Simple_repeat Simple_repeat 1 47 0 3854 121 4 0 chr9 9226873 9227425 -108635202 - MER41A LTR ERV1 0 554 1 8245 129 37 3 chr9 9227425 9228722 -108633905 - MER41A-int LTR ERV1 -2 5944 4604 3491 110 24 0 chr9 9228728 9229238 -108633389 - MER41A LTR ERV1 -32 522 1 578 348 92 20 chr9 9229335 9229953 -108632674 + L2 LINE L2 2589 3256 -16 279 345 43 75 chr9 9230070 9230177 -108632450 + L2 LINE L2 2933 3042 -230 211 53 26 26 chr9 9230177 9230215 -108632412 + (CA)n Simple_repeat Simple_repeat 2 39 0 279 345 43 75 chr9 9230215 9230362 -108632265 + L2 LINE L2 3042 3179 -93 2155 128 0 0 chr9 9230470 9230766 -108631861 + AluSx SINE Alu 3 298 -14 21 0 0 0 chr9 9231052 9231073 -108631554 + AT_rich Low_complexity Low_complexity 1 21 0 1731 187 25 8 chr9 9231363 9231716 -108630911 + MLT1A1 LTR MaLR 5 363 -2 1323 189 41 78 chr9 9232252 9232639 -108629988 - L1ME2 LINE L1 -1 6163 5791 390 305 102 11 chr9 9232863 9233050 -108629577 + MIR SINE MIR 1 204 -58 863 265 12 31 chr9 9233169 9233426 -108629201 - MIR SINE MIR -7 255 4 229 333 0 26 chr9 9234201 9234279 -108628348 - MIR3 SINE MIR -24 184 109 483 230 37 12 chr9 9235526 9235687 -108626940 + L1M4 LINE L1 4949 5113 -1033 1690 200 3 0 chr9 9235784 9236079 -108626548 - AluJo SINE Alu -16 296 1 202 230 27 68 chr9 9236101 9236175 -108626452 + L2 LINE L2 3158 3228 -85 1107 115 0 0 chr9 9236175 9236332 -108626295 - AluSg/x SINE Alu -6 304 148 213 253 152 25 chr9 9236333 9236412 -108626215 + L2 LINE L2 3225 3313 0 653 222 31 25 chr9 9236603 9236765 -108625862 - MER3 DNA MER1_type -46 163 1 2386 101 0 0 chr9 9236978 9237285 -108625342 - AluSg SINE Alu -1 309 3 753 115 0 0 chr9 9237287 9237400 -108625227 - AluSg/x SINE Alu -8 302 190 237 315 14 0 chr9 9238546 9238619 -108624008 + CT-rich Low_complexity Low_complexity 4 77 0 196 354 31 0 chr9 9238765 9238830 -108623797 - MIR SINE MIR -75 133 67 1590 221 127 43 chr9 9238847 9239336 -108623291 + MLT1F LTR MaLR 4 533 -9 797 188 0 0 chr9 9240273 9240406 -108622221 - FLAM_A SINE Alu 0 133 1 1975 120 7 14 chr9 9240939 9241231 -108621396 - AluSx SINE Alu -22 290 1 22 0 0 0 chr9 9242055 9242077 -108620550 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr9 9242635 9242672 -108619955 + AT_rich Low_complexity Low_complexity 1 37 0 291 146 21 0 chr9 9242909 9242957 -108619670 + U7 snRNA snRNA 14 62 -1 24 0 0 0 chr9 9242965 9242989 -108619638 + AT_rich Low_complexity Low_complexity 1 24 0 253 344 82 41 chr9 9243498 9243620 -108619007 + L2 LINE L2 3127 3253 -19 688 163 16 8 chr9 9243633 9243756 -108618871 - FRAM SINE Alu -10 166 43 270 330 54 9 chr9 9244380 9244492 -108618135 - L2 LINE L2 0 3313 3197 216 325 76 45 chr9 9244603 9244760 -108617867 + MIR SINE MIR 26 187 -75 4167 79 2 2 chr9 9246052 9246606 -108616021 + MER41A LTR ERV1 1 554 0 325 313 27 27 chr9 9246689 9246801 -108615826 + MIR SINE MIR 34 145 -63 1978 114 10 10 chr9 9247199 9247489 -108615138 + AluSx SINE Alu 1 290 -22 23 0 0 0 chr9 9247491 9247514 -108615113 + AT_rich Low_complexity Low_complexity 1 23 0 205 262 0 0 chr9 9247667 9247709 -108614918 + polypurine Low_complexity Low_complexity 4 45 0 295 267 80 0 chr9 9248458 9248533 -108614094 + MIR SINE MIR 67 147 -115 1606 186 0 18 chr9 9248534 9248814 -108613813 + AluJo SINE Alu 1 275 -37 237 277 12 12 chr9 9248843 9248926 -108613701 + MIR SINE MIR 136 218 -44 201 180 0 0 chr9 9249564 9249614 -108613013 + CT-rich Low_complexity Low_complexity 1 50 0 288 0 0 0 chr9 9250504 9250536 -108612091 + (CA)n Simple_repeat Simple_repeat 2 33 0 416 258 32 39 chr9 9251334 9251489 -108611138 - MIR SINE MIR 0 262 109 476 276 32 101 chr9 9252199 9252307 -108610320 + L2 LINE L2 3027 3141 -172 1838 154 6 28 chr9 9252307 9252625 -108610002 - AluJb SINE Alu 0 312 2 476 276 32 101 chr9 9252625 9252824 -108609803 + L2 LINE L2 3141 3313 0 2054 75 0 4 chr9 9253376 9253631 -108608996 - AluSc SINE Alu -2 307 54 2110 108 38 0 chr9 9253814 9254102 -108608525 - AluSx SINE Alu -12 300 2 1547 214 20 17 chr9 9254271 9254285 -108608342 - AluJb SINE Alu 0 312 300 226 0 0 0 chr9 9254285 9254310 -108608317 + (TTTTG)n Simple_repeat Simple_repeat 1 125 0 1547 214 20 17 chr9 9254310 9254590 -108608037 - AluJb SINE Alu -12 300 1 2115 107 4 0 chr9 9256089 9256413 -108606214 - AluSx SINE Alu 0 325 1 2272 123 51 14 chr9 9256973 9257324 -108605303 + THE1B LTR MaLR 1 364 0 23 0 0 0 chr9 9258216 9258239 -108604388 + AT_rich Low_complexity Low_complexity 1 23 0 2159 102 3 0 chr9 9258518 9258811 -108603816 + AluSx SINE Alu 1 294 -18 274 242 121 0 chr9 9259735 9259834 -108602793 - MER94 DNA DNA -23 111 1 565 230 54 7 chr9 9260254 9260402 -108602225 + MER3 DNA MER1_type 2 156 -53 200 266 165 25 chr9 9260663 9260742 -108601885 + MIR3 SINE MIR 93 182 -26 27 0 0 0 chr9 9262960 9262987 -108599640 + AT_rich Low_complexity Low_complexity 1 27 0 493 308 66 85 chr9 9263144 9263773 -108598854 - L2 LINE L2 -41 3231 2635 1622 162 0 46 chr9 9265109 9265393 -108597234 - AluJo SINE Alu 0 312 42 360 300 34 11 chr9 9265513 9265660 -108596967 + MIR SINE MIR 6 152 -64 236 328 16 55 chr9 9265768 9265896 -108596731 + MIR SINE MIR 132 254 -8 1358 103 5 0 chr9 9266091 9266275 -108596352 - AluY SINE Alu -7 304 120 1490 47 0 0 chr9 9266275 9266446 -108596181 - AluY SINE Alu -140 171 1 362 303 0 18 chr9 9268659 9268768 -108593859 - MIR SINE MIR -108 154 48 21 0 0 0 chr9 9269941 9269962 -108592665 + AT_rich Low_complexity Low_complexity 1 21 0 6577 48 22 0 chr9 9270764 9271595 -108591032 + L1PA7 LINE L1 5306 6154 0 474 252 23 8 chr9 9271728 9271859 -108590768 + MIR3 SINE MIR 70 202 -6 180 398 11 0 chr9 9272251 9272339 -108590288 - L2 LINE L2 -44 3228 3140 186 262 0 0 chr9 9272405 9272447 -108590180 + L2 LINE L2 3256 3297 -16 371 329 29 61 chr9 9272515 9272761 -108589866 - L2 LINE L2 -196 3076 2839 24 0 0 0 chr9 9272939 9272963 -108589664 + AT_rich Low_complexity Low_complexity 1 24 0 12442 86 9 120 chr9 9277196 9278840 -108583787 - L1P LINE L1 -1116 5030 3746 7467 39 0 2 chr9 9278840 9280523 -108582104 - L1PA5 LINE L1 -9 6145 4465 12442 86 9 120 chr9 9280523 9281336 -108581291 - L1P LINE L1 -2400 3746 2845 6110 100 8 0 chr9 9281332 9282201 -108580426 - L1P3 LINE L1 -5584 877 2 * 198 0 0 0 chr9 9282212 9282234 -108580393 + (T)n Simple_repeat Simple_repeat 1 22 0 1662 62 40 22 chr9 9282459 9282685 -108579942 + MER30 DNA MER1_type 1 230 0 1982 120 0 0 chr9 9282775 9283088 -108579539 - AluSx SINE Alu 0 313 1 272 330 42 25 chr9 9283348 9283466 -108579161 + MER5B DNA MER1_type 20 139 -39 218 266 107 130 chr9 9283353 9283469 -108579158 - MER5A DNA MER1_type -24 165 53 * 2260 124 0 0 chr9 9283469 9283768 -108578859 - AluSx SINE Alu -13 299 1 218 266 107 130 chr9 9283768 9283820 -108578807 - MER5A DNA MER1_type -136 53 1 1977 93 0 99 chr9 9284613 9284937 -108577690 - AluSc SINE Alu -17 292 1 2334 103 0 0 chr9 9284943 9285316 -108577311 - AluSx SINE Alu 0 373 1 23 0 0 0 chr9 9286030 9286053 -108576574 + AT_rich Low_complexity Low_complexity 1 23 0 313 303 33 49 chr9 9287030 9287274 -108575353 + L2 LINE L2 2090 2329 -985 864 82 0 0 chr9 9287569 9287704 -108574923 + (TA)n Simple_repeat Simple_repeat 2 136 0 2275 95 34 0 chr9 9288078 9288373 -108574254 + AluSx SINE Alu 1 305 -7 237 386 44 0 chr9 9289108 9289222 -108573405 - MIR SINE MIR -20 242 124 314 252 115 43 chr9 9289851 9289990 -108572637 - MIR3 SINE MIR -23 185 37 180 0 0 0 chr9 9290266 9290286 -108572341 + (TG)n Simple_repeat Simple_repeat 2 21 0 201 178 22 22 chr9 9290286 9290322 -108572305 + GA-rich Low_complexity Low_complexity 7 45 0 1156 321 147 29 chr9 9290342 9291068 -108571559 + L2 LINE L2 1992 2803 -511 182 128 26 0 chr9 9291127 9291166 -108571461 + (TA)n Simple_repeat Simple_repeat 2 41 0 319 265 76 53 chr9 9291246 9291378 -108571249 + L2 LINE L2 3178 3312 -1 21 71 0 0 chr9 9292180 9292222 -108570405 + AT_rich Low_complexity Low_complexity 1 42 0 5058 175 16 4 chr9 9292416 9293643 -108568984 + L1PA16 LINE L1 4921 6166 0 576 312 153 14 chr9 9294138 9294503 -108568124 + L3b LINE CR1 1102 1517 -66 36 0 0 0 chr9 9294738 9294774 -108567853 + AT_rich Low_complexity Low_complexity 1 36 0 195 129 0 0 chr9 9295565 9295596 -108567031 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 479 240 199 14 chr9 9295942 9296088 -108566539 + MER5B DNA MER1_type 1 173 -5 368 333 89 7 chr9 9296731 9296866 -108565761 + L2 LINE L2 3123 3268 -4 284 208 0 0 chr9 9298276 9298329 -108564298 - L2 LINE L2 0 3313 3261 685 297 53 12 chr9 9299165 9299411 -108563216 + MIR SINE MIR 6 261 -1 450 309 20 56 chr9 9299811 9300060 -108562567 + MIR SINE MIR 23 262 0 296 339 17 44 chr9 9300234 9300414 -108562213 - L2 LINE L2 -173 3099 2925 270 319 0 0 chr9 9301229 9301298 -108561329 - L2 LINE L2 -4 3268 3200 234 62 0 0 chr9 9301661 9301693 -108560934 + (GA)n Simple_repeat Simple_repeat 2 33 0 649 223 120 12 chr9 9302077 9302319 -108560308 + L1ME3A LINE L1 5682 5949 -221 475 194 0 9 chr9 9302595 9302703 -108559924 - L1 LINE L1 -2198 3948 3842 225 132 0 0 chr9 9302876 9302914 -108559713 + (TCC)n Simple_repeat Simple_repeat 1 38 0 336 83 0 0 chr9 9303030 9303078 -108559549 + (TCC)n Simple_repeat Simple_repeat 2 49 0 230 241 0 19 chr9 9303117 9303171 -108559456 + CT-rich Low_complexity Low_complexity 3 55 0 507 45 0 0 chr9 9303741 9303807 -108558820 + (CA)n Simple_repeat Simple_repeat 2 67 0 270 314 137 8 chr9 9305712 9305836 -108556791 - MIR3 SINE MIR -62 146 7 270 262 0 0 chr9 9305938 9305999 -108556628 + MIR3 SINE MIR 138 198 -10 258 224 155 17 chr9 9306247 9306363 -108556264 - MER112 DNA MER1_type -9 251 120 28 0 0 0 chr9 9306366 9306394 -108556233 + AT_rich Low_complexity Low_complexity 1 28 0 505 243 81 29 chr9 9306448 9306621 -108556006 - MIR SINE MIR -70 192 11 2223 103 3 0 chr9 9307019 9307309 -108555318 + AluSx SINE Alu 1 291 -21 2466 42 7 0 chr9 9307717 9308025 -108554602 + L1PA3 LINE L1 5846 6155 0 230 290 58 77 chr9 9311358 9311565 -108551062 + L2 LINE L2 2550 2752 -562 223 231 13 13 chr9 9312190 9312268 -108550359 + CT-rich Low_complexity Low_complexity 2 79 0 336 286 76 25 chr9 9313104 9313223 -108549404 + MER5B DNA MER1_type 4 128 -50 1919 125 7 17 chr9 9313243 9313532 -108549095 - AluSx SINE Alu -26 286 1 248 217 33 0 chr9 9313534 9313594 -108549033 - MER5B DNA MER1_type -115 63 2 285 227 40 13 chr9 9314537 9314612 -108548015 + MER5A DNA MER1_type 87 163 -26 378 0 0 0 chr9 9315716 9315758 -108546869 + (CA)n Simple_repeat Simple_repeat 2 43 0 367 264 164 0 chr9 9318153 9318263 -108544364 + L2 LINE L2 3145 3272 0 553 283 45 60 chr9 9318275 9318540 -108544087 + L2 LINE L2 3043 3303 -10 205 190 69 17 chr9 9319191 9319249 -108543378 - MIR SINE MIR -110 152 92 293 299 80 37 chr9 9319761 9319948 -108542679 + MIR SINE MIR 57 251 -11 221 246 49 0 chr9 9320167 9320228 -108542399 + MIR SINE MIR 128 191 -71 839 169 41 52 chr9 9320342 9320514 -108542113 + AluJo SINE Alu 4 173 -139 381 327 70 0 chr9 9320841 9320997 -108541630 + MIR SINE MIR 13 179 -83 311 261 121 48 chr9 9321003 9321168 -108541459 + MLT1L LTR MaLR 437 613 -2 3050 131 59 85 chr9 9322657 9322697 -108539930 - L1MA9 LINE L1 -2 6310 6270 261 0 0 0 chr9 9322697 9322726 -108539901 + (TG)n Simple_repeat Simple_repeat 2 30 0 * 753 71 0 0 chr9 9322725 9322838 -108539789 + (TA)n Simple_repeat Simple_repeat 1 113 0 3050 131 59 85 chr9 9322726 9323446 -108539181 - L1MA9 LINE L1 -42 6270 5679 1292 151 21 45 chr9 9323445 9323736 -108538891 + L1 LINE L1 4178 4461 -1685 * 1802 155 0 50 chr9 9324434 9324757 -108537870 + AluJb SINE Alu 3 309 -3 227 336 60 87 chr9 9326224 9326373 -108536254 - L2 LINE L2 -1 3271 3127 386 154 13 0 chr9 9326546 9326624 -108536003 + GA-rich Low_complexity Low_complexity 3 81 0 196 30 61 0 chr9 9328164 9328197 -108534430 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2189 99 0 35 chr9 9328584 9328897 -108533730 - AluSx SINE Alu -10 302 1 288 0 0 0 chr9 9329131 9329163 -108533464 + (ATG)n Simple_repeat Simple_repeat 1 32 0 21 36 0 0 chr9 9329475 9329503 -108533124 + AT_rich Low_complexity Low_complexity 1 28 0 203 250 26 13 chr9 9329657 9329733 -108532894 + (TA)n Simple_repeat Simple_repeat 1 77 0 411 245 93 29 chr9 9329775 9329914 -108532713 + MIR SINE MIR 59 206 -56 21 0 0 0 chr9 9329934 9329955 -108532672 + AT_rich Low_complexity Low_complexity 1 21 0 2195 106 0 0 chr9 9330095 9330409 -108532218 - AluSq SINE Alu 0 314 1 5783 160 19 36 chr9 9331131 9333232 -108529395 + L1MA3 LINE L1 4185 6174 -131 697 191 14 7 chr9 9333358 9333505 -108529122 + L1MA3 LINE L1 6158 6305 0 419 343 77 0 chr9 9334157 9334326 -108528301 + L2 LINE L2 2872 3053 -219 238 244 215 15 chr9 9334820 9334955 -108527672 + MIR SINE MIR 52 213 -49 403 283 6 24 chr9 9335293 9335459 -108527168 + CT-rich Low_complexity Low_complexity 2 164 0 210 71 0 0 chr9 9335462 9335490 -108527137 + (T)n Simple_repeat Simple_repeat 1 28 0 2185 123 0 0 chr9 9335730 9336039 -108526588 - AluSc SINE Alu 0 309 1 24 67 0 0 chr9 9336292 9336337 -108526290 + AT_rich Low_complexity Low_complexity 1 45 0 1378 199 31 50 chr9 9337330 9337647 -108524980 - AluJo SINE Alu -1 311 1 189 74 0 0 chr9 9338188 9338215 -108524412 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 242 261 17 118 chr9 9338229 9338348 -108524279 - L2 LINE L2 -19 3253 3147 1437 163 103 39 chr9 9339599 9339881 -108522746 - AluJb SINE Alu -12 300 1 362 264 96 56 chr9 9339936 9340061 -108522566 - L2 LINE L2 0 3272 3143 515 274 39 39 chr9 9341101 9341254 -108521373 - MIR3 SINE MIR -22 186 34 1993 153 0 0 chr9 9341417 9341711 -108520916 + AluSx SINE Alu 1 294 -18 348 264 44 0 chr9 9341911 9342002 -108520625 - MIR SINE MIR 0 262 168 219 371 35 28 chr9 9342846 9343007 -108519620 - MIR SINE MIR -62 146 25 264 250 14 14 chr9 9343616 9343688 -108518939 - L2 LINE L2 0 3313 3242 312 305 166 11 chr9 9344000 9344085 -108518542 - MIR SINE MIR -43 219 149 583 198 27 0 chr9 9344085 9344196 -108518431 + MER81 DNA DNA 1 114 0 312 305 166 11 chr9 9344196 9344297 -108518330 - MIR SINE MIR -113 149 4 2196 127 0 0 chr9 9344303 9344611 -108518016 - AluSq SINE Alu -5 308 1 21 0 0 0 chr9 9345197 9345218 -108517409 + AT_rich Low_complexity Low_complexity 1 21 0 724 293 19 38 chr9 9345764 9346030 -108516597 - MIR SINE MIR 0 262 2 563 324 22 21 chr9 9347610 9347819 -108514808 + MIR SINE MIR 2 213 -49 245 106 0 21 chr9 9348064 9348111 -108514516 + (GA)n Simple_repeat Simple_repeat 1 46 0 460 204 11 11 chr9 9348121 9348214 -108514413 + L2 LINE L2 3180 3272 0 21 0 0 0 chr9 9348264 9348285 -108514342 + AT_rich Low_complexity Low_complexity 1 21 0 4553 92 6 0 chr9 9348285 9348917 -108513710 - L1PB1 LINE L1 -3 6148 5513 2430 55 3 0 chr9 9349953 9350244 -108512383 - AluY SINE Alu -17 294 3 185 255 39 39 chr9 9351166 9351217 -108511410 - MIR3 SINE MIR -18 190 140 * 195 337 22 22 chr9 9351209 9351301 -108511326 - L2 LINE L2 -18 3295 3204 309 227 34 11 chr9 9351308 9351396 -108511231 + L1MCa LINE L1 1979 2068 -4358 * 319 262 71 0 chr9 9351373 9351457 -108511170 + L1MC4 LINE L1 6894 6983 -1339 339 311 0 0 chr9 9351463 9351553 -108511074 + L1MC4 LINE L1 6614 6703 -1339 229 265 0 0 chr9 9352354 9352403 -108510224 + L1ME3A LINE L1 5480 5528 -638 865 303 52 19 chr9 9352839 9352886 -108509741 + L1ME3A LINE L1 5783 5827 -343 2184 128 0 3 chr9 9352886 9353190 -108509437 + AluSq SINE Alu 1 303 -10 865 303 52 19 chr9 9353190 9353508 -108509119 + L1ME3A LINE L1 5827 6160 -10 255 346 6 58 chr9 9356605 9356761 -108505866 + MIR SINE MIR 65 212 -50 21 71 0 0 chr9 9358957 9358999 -108503628 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr9 9359319 9359340 -108503287 + AT_rich Low_complexity Low_complexity 1 21 0 429 264 30 85 chr9 9360246 9360447 -108502180 - MIR SINE MIR -40 222 33 255 330 62 36 chr9 9360710 9360822 -108501805 + MIR3 SINE MIR 45 159 -49 349 350 34 28 chr9 9361031 9361145 -108501482 + MER5A DNA MER1_type 9 126 -63 2162 127 0 6 chr9 9361145 9361459 -108501168 - AluSx SINE Alu 0 312 1 349 350 34 28 chr9 9361459 9361521 -108501106 + MER5A DNA MER1_type 126 186 -3 763 168 7 13 chr9 9361962 9362111 -108500516 - L1PA16 LINE L1 0 6166 6019 194 250 60 0 chr9 9362470 9362537 -108500090 + MIR SINE MIR 68 141 -67 809 261 72 13 chr9 9362837 9363143 -108499484 - L1MC4 LINE L1 0 8042 7719 2030 139 14 0 chr9 9363204 9363499 -108499128 + AluSx SINE Alu 1 299 -13 2108 130 0 0 chr9 9364271 9364570 -108498057 + AluSx SINE Alu 1 299 -13 478 299 36 0 chr9 9365186 9365323 -108497304 + MIR SINE MIR 58 199 -63 376 280 37 49 chr9 9365900 9366143 -108496484 + L1MB8 LINE L1 892 1131 -5411 1271 122 0 0 chr9 9366180 9366348 -108496279 + AluY SINE Alu 130 300 -11 189 0 0 0 chr9 9366348 9366369 -108496258 + (TA)n Simple_repeat Simple_repeat 2 22 0 1271 122 0 0 chr9 9366369 9366380 -108496247 + AluY SINE Alu 299 309 -2 2055 279 45 13 chr9 9366390 9367176 -108495451 + L1MB8 LINE L1 1249 2059 -4587 4425 246 57 70 chr9 9367181 9368792 -108493835 + L1MB8 LINE L1 3253 4884 -1792 2667 124 11 30 chr9 9368792 9368835 -108493792 + MSTC LTR MaLR 1 43 -385 2205 78 4 0 chr9 9368835 9369151 -108493476 - AluY SINE Alu 0 317 1 2667 124 11 30 chr9 9369151 9369542 -108493085 + MSTC LTR MaLR 43 428 0 4425 246 57 70 chr9 9369542 9370203 -108492424 + L1MB8 LINE L1 4884 5552 -1124 404 19 19 0 chr9 9370203 9370256 -108492371 + (TG)n Simple_repeat Simple_repeat 1 54 0 4425 246 57 70 chr9 9370256 9371470 -108491157 + L1MB8 LINE L1 5552 6674 -2 23 0 0 0 chr9 9371522 9371545 -108491082 + AT_rich Low_complexity Low_complexity 1 23 0 224 345 129 38 chr9 9371578 9371787 -108490840 + MIR SINE MIR 34 261 -1 24 53 0 0 chr9 9372348 9372386 -108490241 + AT_rich Low_complexity Low_complexity 1 38 0 381 302 30 59 chr9 9372708 9372910 -108489717 - L2 LINE L2 0 3313 3118 3077 221 89 17 chr9 9372925 9373756 -108488871 - MER97a DNA MER1_type 0 894 4 244 352 69 110 chr9 9373802 9374194 -108488433 - L2 LINE L2 -366 2948 2573 276 290 0 50 chr9 9374288 9374388 -108488239 + (TATATG)n Simple_repeat Simple_repeat 5 99 0 313 248 58 9 chr9 9374388 9374529 -108488098 - MLT2D LTR ERVL -109 411 238 183 80 0 0 chr9 9374867 9374892 -108487735 + (T)n Simple_repeat Simple_repeat 1 25 0 1989 108 16 32 chr9 9374942 9375258 -108487369 - AluSq SINE Alu -2 311 1 249 108 0 0 chr9 9376376 9376413 -108486214 + (TG)n Simple_repeat Simple_repeat 1 37 0 1940 126 4 0 chr9 9376953 9377230 -108485397 + AluSx SINE Alu 22 299 -13 262 186 23 23 chr9 9377508 9377594 -108485033 + (CATG)n Simple_repeat Simple_repeat 2 87 0 459 182 36 24 chr9 9377632 9377797 -108484830 + (CATG)n Simple_repeat Simple_repeat 1 167 0 1717 161 21 3 chr9 9377880 9378166 -108484461 + AluSx SINE Alu 1 291 -21 4956 239 35 22 chr9 9378302 9378389 -108484238 - L1P LINE L1 -2274 3872 3788 1722 174 21 0 chr9 9378389 9378676 -108483951 - AluJo SINE Alu -19 293 1 4956 239 35 22 chr9 9378676 9379858 -108482769 - L1P LINE L1 -2358 3788 2579 2146 109 10 16 chr9 9379858 9380161 -108482466 + AluSx SINE Alu 1 301 -11 4956 239 35 22 chr9 9380161 9380387 -108482240 - L1P LINE L1 -3567 2579 2357 5688 168 23 57 chr9 9380387 9382329 -108480298 + L1PA16 LINE L1 3977 5888 -278 6298 36 0 3 chr9 9382538 9383294 -108479333 - L1PA5 LINE L1 -23 6131 5378 663 329 28 9 chr9 9383297 9383513 -108479114 - MIR SINE MIR -37 225 6 330 321 62 53 chr9 9383585 9383828 -108478799 + L1ME LINE L1 5104 5348 -798 497 281 84 38 chr9 9383888 9384208 -108478419 + L1ME LINE L1 5383 5717 -453 346 19 0 38 chr9 9385651 9385704 -108476923 + (CAAAA)n Simple_repeat Simple_repeat 5 55 0 584 303 188 0 chr9 9386134 9386342 -108476285 + MIR SINE MIR 2 248 -14 706 253 84 5 chr9 9386471 9386661 -108475966 - MIR SINE MIR 0 262 58 22 0 0 0 chr9 9386760 9386782 -108475845 + AT_rich Low_complexity Low_complexity 1 22 0 215 224 0 15 chr9 9387255 9387322 -108475305 + GA-rich Low_complexity Low_complexity 3 68 0 222 307 121 7 chr9 9387344 9387484 -108475143 - MIR SINE MIR -10 252 97 5154 156 20 3 chr9 9387922 9389096 -108473531 - L1PA16 LINE L1 -105 6061 4868 861 86 0 0 chr9 9389160 9389277 -108473350 - L1PA8 LINE L1 0 6172 6056 2253 113 0 0 chr9 9389577 9389877 -108472750 + AluSq SINE Alu 1 300 -13 243 258 32 0 chr9 9390084 9390146 -108472481 - MIR SINE MIR -48 160 96 210 118 0 0 chr9 9390550 9390584 -108472043 + (TA)n Simple_repeat Simple_repeat 2 35 0 240 211 184 28 chr9 9390585 9390694 -108471933 - L1ME4a LINE L1 -196 5925 5800 195 306 65 0 chr9 9391019 9391081 -108471546 + L2 LINE L2 3246 3311 -2 237 367 176 27 chr9 9391649 9392241 -108470386 + L2 LINE L2 2225 2904 -410 216 351 0 14 chr9 9393130 9393204 -108469423 + L2 LINE L2 3236 3308 -5 234 270 79 0 chr9 9393252 9393315 -108469312 - MER91A DNA MER1_type -19 177 110 4299 199 38 27 chr9 9394066 9395270 -108467357 + L1MA9 LINE L1 5057 6274 -38 211 163 20 41 chr9 9396466 9396515 -108466112 + MIR SINE MIR 158 205 -57 207 286 0 0 chr9 9397304 9397367 -108465260 + A-rich Low_complexity Low_complexity 1 63 0 1459 164 52 31 chr9 9398287 9398573 -108464054 - AluJo SINE Alu -20 292 1 200 325 75 0 chr9 9398592 9398672 -108463955 - MIR SINE MIR -73 189 104 23 78 0 0 chr9 9398944 9398995 -108463632 + AT_rich Low_complexity Low_complexity 1 51 0 24 0 0 0 chr9 9399190 9399214 -108463413 + AT_rich Low_complexity Low_complexity 1 24 0 337 313 121 16 chr9 9401065 9401321 -108461306 - L1ME4a LINE L1 -1 6120 5838 252 262 141 53 chr9 9401385 9401591 -108461036 - L1ME4a LINE L1 -386 5735 5512 21 0 0 0 chr9 9401930 9401951 -108460676 + AT_rich Low_complexity Low_complexity 1 21 0 208 306 0 40 chr9 9402705 9402829 -108459798 + GA-rich Low_complexity Low_complexity 2 120 0 3043 140 30 4 chr9 9403838 9404380 -108458247 - L1MA4 LINE L1 -1 6299 5744 3457 144 33 33 chr9 9405237 9405696 -108456931 + MER39 LTR ERV1 75 536 -171 2101 125 0 13 chr9 9405696 9406001 -108456626 + AluSx SINE Alu 1 301 -11 3457 144 33 33 chr9 9406001 9406174 -108456453 + MER39 LTR ERV1 535 707 0 447 308 96 0 chr9 9407960 9408116 -108454511 + MIR SINE MIR 36 206 -56 21 36 0 0 chr9 9409864 9409892 -108452735 + AT_rich Low_complexity Low_complexity 1 28 0 534 215 55 6 chr9 9409959 9410122 -108452505 + L1MC5 LINE L1 7610 7780 -181 2435 223 18 38 chr9 9410737 9411277 -108451350 + L1ME1 LINE L1 5508 6034 -132 1750 175 42 28 chr9 9411277 9411637 -108450990 - MLT1A1 LTR MaLR 0 365 1 2435 223 18 38 chr9 9411637 9411763 -108450864 + L1ME1 LINE L1 6034 6161 -5 317 314 29 9 chr9 9411862 9411967 -108450660 - L1ME LINE L1 -305 5816 5710 14914 130 14 15 chr9 9411979 9414399 -108448228 + Tigger1 DNA MER2_type 1 2417 -1 245 306 117 9 chr9 9415909 9416020 -108446607 - L2 LINE L2 0 3313 3191 304 301 24 57 chr9 9416086 9416209 -108446418 - MIR SINE MIR -108 154 36 359 279 39 3 chr9 9417660 9417794 -108444833 - MER63 DNA MER1_type 0 1061 692 29 47 0 0 chr9 9419057 9419100 -108443527 + AT_rich Low_complexity Low_complexity 1 43 0 254 368 26 13 chr9 9420024 9420179 -108442448 + MIR SINE MIR 106 262 0 26 50 0 0 chr9 9420764 9420804 -108441823 + AT_rich Low_complexity Low_complexity 1 40 0 26 0 0 0 chr9 9421830 9421856 -108440771 + AT_rich Low_complexity Low_complexity 1 26 0 26 0 0 0 chr9 9422222 9422248 -108440379 + AT_rich Low_complexity Low_complexity 1 26 0 356 266 156 41 chr9 9422344 9422562 -108440065 - HAL1 LINE L1 -577 1930 1688 21 0 0 0 chr9 9422581 9422602 -108440025 + AT_rich Low_complexity Low_complexity 1 21 0 870 39 0 0 chr9 9422691 9422795 -108439832 - L1PA3 LINE L1 -3 6152 6049 2251 64 7 0 chr9 9422971 9423303 -108439324 - AluY SINE Alu 0 334 1 249 33 0 0 chr9 9424183 9424213 -108438414 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 511 117 0 0 chr9 9424213 9424290 -108438337 - L1PA10 LINE L1 -21 6147 6071 792 283 81 25 chr9 9425148 9425594 -108437033 + LTR33 LTR ERVL 33 519 -2 24 53 0 0 chr9 9425721 9425759 -108436868 + AT_rich Low_complexity Low_complexity 1 38 0 2117 228 77 37 chr9 9426605 9427140 -108435487 + MLT1E LTR MaLR 1 556 -37 195 69 0 0 chr9 9428956 9428985 -108433642 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 264 299 0 0 chr9 9429701 9429768 -108432859 + (TG)n Simple_repeat Simple_repeat 2 68 0 4216 79 2 7 chr9 9429923 9430480 -108432147 + MER41A LTR ERV1 1 554 0 376 314 106 5 chr9 9431076 9431283 -108431344 + MIR SINE MIR 2 229 -33 196 302 116 0 chr9 9431634 9431736 -108430891 - MIR SINE MIR -63 145 25 874 9 27 0 chr9 9434033 9434143 -108428484 + (GAAA)n Simple_repeat Simple_repeat 3 115 0 1983 139 0 3 chr9 9434203 9434490 -108428137 + AluSx SINE Alu 1 286 -26 24 0 0 0 chr9 9434510 9434534 -108428093 + AT_rich Low_complexity Low_complexity 1 24 0 602 245 20 37 chr9 9434744 9435012 -108427615 + L1MA10 LINE L1 5916 6333 -1 1010 305 102 4 chr9 9435100 9435552 -108427075 - L2 LINE L2 -601 2713 2218 292 354 49 18 chr9 9435553 9435717 -108426910 - L2 LINE L2 -2518 796 628 5846 153 42 52 chr9 9435980 9436699 -108425928 + Tigger3b DNA MER2_type 1 703 -2325 1763 69 0 0 chr9 9436699 9436932 -108425695 + L1PA8 LINE L1 5938 6170 -2 5846 153 42 52 chr9 9436932 9437456 -108425171 + Tigger3b DNA MER2_type 703 1231 0 226 294 46 28 chr9 9437837 9437946 -108424681 + MIR SINE MIR 123 233 -29 1398 175 33 17 chr9 9438322 9438636 -108423991 - L1PA16 LINE L1 -9 6165 5813 796 275 93 55 chr9 9438768 9439590 -108423037 - L1ME4a LINE L1 -3 6118 5256 637 310 94 53 chr9 9440653 9441169 -108421458 - L2 LINE L2 0 3313 2784 216 290 32 16 chr9 9443382 9443444 -108419183 - L2 LINE L2 -10 3262 3200 1188 141 101 52 chr9 9443736 9444042 -108418585 + MER33 DNA MER1_type 1 321 -3 22 0 0 0 chr9 9444274 9444296 -108418331 + AT_rich Low_complexity Low_complexity 1 22 0 288 0 0 0 chr9 9445055 9445087 -108417540 + (T)n Simple_repeat Simple_repeat 1 32 0 226 299 15 0 chr9 9445991 9446058 -108416569 + L2 LINE L2 3242 3309 -4 1548 146 32 0 chr9 9446063 9446310 -108416317 - Tigger3(Golem) DNA MER2_type -2 3027 2773 559 250 25 0 chr9 9446311 9446431 -108416196 - Tigger3(Golem) DNA MER2_type -2889 140 18 194 229 71 0 chr9 9446610 9446680 -108415947 - L2 LINE L2 -227 3045 2971 338 280 80 40 chr9 9447484 9447634 -108414993 + MIR SINE MIR 51 206 -56 377 316 52 11 chr9 9448027 9448201 -108414426 - MIR3 SINE MIR -6 202 22 246 235 15 15 chr9 9448440 9448508 -108414119 + CT-rich Low_complexity Low_complexity 2 69 0 401 273 12 23 chr9 9449098 9449255 -108413372 + MIR SINE MIR 39 191 -71 597 235 166 18 chr9 9449418 9449635 -108412992 + MIR SINE MIR 12 260 -2 268 276 15 104 chr9 9449829 9449963 -108412664 + L2 LINE L2 3150 3271 -1 2925 203 23 38 chr9 9449982 9450672 -108411955 + MER67C LTR ERV1 1 680 -30 22 0 0 0 chr9 9450985 9451007 -108411620 + AT_rich Low_complexity Low_complexity 1 22 0 1175 165 21 25 chr9 9451183 9451425 -108411202 + L1MC3 LINE L1 7480 7720 -65 489 270 17 0 chr9 9451964 9452079 -108410548 - MIR3 SINE MIR -9 199 83 278 321 98 9 chr9 9452660 9452772 -108409855 + MIR SINE MIR 24 145 -63 25 0 0 0 chr9 9452802 9452827 -108409800 + AT_rich Low_complexity Low_complexity 1 25 0 2180 106 3 7 chr9 9453336 9453637 -108408990 - AluSq SINE Alu -12 301 2 26 0 0 0 chr9 9453644 9453670 -108408957 + AT_rich Low_complexity Low_complexity 1 26 0 902 197 45 40 chr9 9454230 9454453 -108408174 + MER58A DNA MER1_type 1 224 0 192 263 0 0 chr9 9454790 9454828 -108407799 - MIR SINE MIR -115 147 110 312 248 179 81 chr9 9454835 9455069 -108407558 - MIR SINE MIR 0 262 6 23 33 0 0 chr9 9455936 9455966 -108406661 + AT_rich Low_complexity Low_complexity 1 30 0 2668 88 0 0 chr9 9455988 9456350 -108406277 - L1PA13 LINE L1 -2 6161 5800 242 319 219 12 chr9 9456474 9456634 -108405993 - MIR3 SINE MIR -11 197 5 554 314 83 62 chr9 9456770 9457314 -108405313 - MLT1K LTR MaLR -29 559 5 219 69 0 0 chr9 9457378 9457407 -108405220 + (T)n Simple_repeat Simple_repeat 1 29 0 477 291 168 79 chr9 9457523 9457929 -108404698 + LTR67 LTR ERVL 101 542 -15 952 155 0 0 chr9 9458394 9458756 -108403871 + AluSx SINE Alu 1 362 0 540 272 17 29 chr9 9461387 9461560 -108401067 - MER58B DNA MER1_type -1 340 170 6470 135 61 9 chr9 9461560 9463731 -108398896 + L1MA2 LINE L1 4014 6304 0 245 189 0 0 chr9 9464052 9464089 -108398538 - MER105 DNA DNA -162 42 6 258 310 37 53 chr9 9464775 9464967 -108397660 + MIR SINE MIR 27 212 -50 1122 252 94 3 chr9 9465253 9465539 -108397088 + Tigger7 DNA MER2_type 1 312 -2175 * 1253 148 5 0 chr9 9465528 9465737 -108396890 + Tigger7 DNA MER2_type 2265 2474 -13 22 35 0 0 chr9 9465926 9465955 -108396672 + AT_rich Low_complexity Low_complexity 1 29 0 27 29 0 0 chr9 9465990 9466024 -108396603 + AT_rich Low_complexity Low_complexity 1 34 0 1871 170 19 32 chr9 9466743 9467113 -108395514 - MLT1A1 LTR MaLR 0 365 1 222 368 0 0 chr9 9467971 9468047 -108394580 + MIR SINE MIR 1 76 -186 243 103 0 0 chr9 9468155 9468194 -108394433 + (ATG)n Simple_repeat Simple_repeat 1 39 0 629 205 21 52 chr9 9468304 9468477 -108394150 + MLT1C LTR MaLR 311 467 0 392 291 7 61 chr9 9468869 9469017 -108393610 - MIR SINE MIR -31 231 92 243 355 40 24 chr9 9469452 9469576 -108393051 - L2 LINE L2 -1 3271 3146 452 301 63 10 chr9 9469786 9469992 -108392635 + L1ME LINE L1 5505 5724 -446 858 191 65 0 chr9 9470005 9470204 -108392423 + L1MA8 LINE L1 6075 6286 -5 442 273 9 0 chr9 9470213 9470323 -108392304 - MLT2D LTR ERVL -303 111 1 245 213 73 6 chr9 9470488 9470652 -108391975 + (TA)n Simple_repeat Simple_repeat 2 176 0 22 35 0 0 chr9 9471564 9471593 -108391034 + AT_rich Low_complexity Low_complexity 1 29 0 274 267 0 0 chr9 9472078 9472138 -108390489 - MIR3 SINE MIR -7 201 142 2595 23 7 3 chr9 9473219 9473529 -108389098 - AluY SINE Alu 0 311 1 22 35 0 0 chr9 9474440 9474469 -108388158 + AT_rich Low_complexity Low_complexity 1 29 0 1038 273 122 35 chr9 9474491 9475490 -108387137 + L1ME3A LINE L1 4272 5357 -789 764 263 72 65 chr9 9475616 9476034 -108386593 + L1ME3A LINE L1 5743 6163 -7 339 136 23 11 chr9 9477299 9477387 -108385240 + (TCTA)n Simple_repeat Simple_repeat 4 92 0 434 345 20 35 chr9 9477865 9478068 -108384559 + MIR3 SINE MIR 9 208 0 305 303 22 11 chr9 9478349 9478438 -108384189 + L2 LINE L2 3219 3308 -5 997 293 83 34 chr9 9479801 9480482 -108382145 - L2 LINE L2 -4 3309 2577 305 340 25 31 chr9 9480631 9480793 -108381834 + MIR SINE MIR 102 262 0 663 307 45 22 chr9 9480837 9481238 -108381389 - L1M4 LINE L1 -2383 3763 3354 1098 249 78 80 chr9 9481244 9481718 -108380909 + MLT1D LTR MaLR 3 475 -30 1750 129 52 4 chr9 9481737 9482041 -108380586 + AluSp SINE Alu 1 317 0 3314 210 28 41 chr9 9482402 9482878 -108379749 - L1MD2 LINE L1 -1 6358 5883 288 327 51 37 chr9 9482878 9483312 -108379315 - L1PA8A LINE L1 -232 5899 5460 1943 139 3 0 chr9 9483392 9483686 -108378941 - AluSc SINE Alu -14 295 1 23 0 0 0 chr9 9485375 9485398 -108377229 + AT_rich Low_complexity Low_complexity 1 23 0 975 168 5 59 chr9 9485696 9485899 -108376728 - AluJo SINE Alu -28 284 93 1566 214 64 120 chr9 9485942 9486638 -108375989 + MLT1E1 LTR MaLR 1 650 -4 378 0 0 0 chr9 9487057 9487099 -108375528 + (CA)n Simple_repeat Simple_repeat 2 43 0 308 343 7 21 chr9 9487366 9487509 -108375118 - MIR SINE MIR -12 250 110 229 273 18 0 chr9 9487965 9488020 -108374607 - L2 LINE L2 -8 3305 3250 2018 189 112 5 chr9 9488158 9488576 -108374051 + MLT2C2 LTR ERVL 2 464 0 327 237 119 25 chr9 9488711 9488829 -108373798 + MIR SINE MIR 121 249 -13 22 0 0 0 chr9 9489359 9489381 -108373246 + AT_rich Low_complexity Low_complexity 1 22 0 1085 87 6 6 chr9 9489381 9489580 -108373047 - L1M LINE L1 -743 5403 5214 1507 106 16 8 chr9 9489927 9490172 -108372455 - L1MA3 LINE L1 0 6305 6059 6765 58 84 0 chr9 9490189 9491175 -108371452 - L1PA5 LINE L1 -2 6152 5146 5231 105 8 19 chr9 9491184 9492065 -108370562 - L1MA3 LINE L1 -257 6048 5179 618 260 78 39 chr9 9493386 9493617 -108369010 - LTR16A LTR ERVL -6 444 205 463 113 72 10 chr9 9493617 9493714 -108368913 - L1MA5A LINE L1 -1 6296 6194 321 176 29 0 chr9 9493714 9493782 -108368845 - L1MA5A LINE L1 -57 6240 6171 * 2945 148 47 9 chr9 9493756 9494396 -108368231 - L1MA5A LINE L1 -46 6251 5548 243 298 80 16 chr9 9494955 9495087 -108367540 - MIR SINE MIR -61 147 2 539 258 91 45 chr9 9495210 9495431 -108367196 - MIR SINE MIR -27 235 5 8082 99 3 6 chr9 9495512 9496707 -108365920 - L1PA7 LINE L1 -2718 3428 2237 3782 109 16 0 chr9 9496708 9497277 -108365350 + L1PA7 LINE L1 3444 4021 -2125 9206 96 4 3 chr9 9497278 9499355 -108363272 + L1PA7 LINE L1 4075 6153 -1 22 0 0 0 chr9 9502124 9502146 -108360481 + AT_rich Low_complexity Low_complexity 1 22 0 223 315 77 31 chr9 9502397 9502527 -108360100 - MIR SINE MIR -41 221 86 2208 121 16 0 chr9 9502670 9502977 -108359650 - AluSx SINE Alu 0 312 1 2155 115 26 0 chr9 9503101 9503405 -108359222 + AluSx SINE Alu 1 312 0 648 223 141 15 chr9 9503580 9503786 -108358841 + MIR SINE MIR 28 259 -3 254 208 0 0 chr9 9504011 9504058 -108358569 - MER58A DNA MER1_type -17 207 161 475 255 57 0 chr9 9504058 9504164 -108358463 - MER58A DNA MER1_type 0 113 2 182 333 118 11 chr9 9504237 9504330 -108358297 + MIR3 SINE MIR 83 185 -23 2804 135 30 4 chr9 9504723 9505219 -108357408 - L1MA4 LINE L1 0 6300 5792 228 184 184 0 chr9 9506377 9506426 -108356201 + L2 LINE L2 3209 3266 -6 3720 252 78 36 chr9 9507591 9508974 -108353653 + L1MEc LINE L1 2197 3521 -2694 3012 112 18 22 chr9 9508974 9509476 -108353151 + L1PB2 LINE L1 5651 6150 -1 3720 252 78 36 chr9 9509476 9509539 -108353088 + L1MEc LINE L1 3521 3580 -2635 191 35 0 35 chr9 9509539 9509568 -108353059 + (CAA)n Simple_repeat Simple_repeat 2 29 0 3720 252 78 36 chr9 9509568 9510227 -108352400 + L1MEc LINE L1 3580 4402 -1813 477 198 23 0 chr9 9510335 9510421 -108352206 - AluJ/FLAM SINE Alu -222 90 3 2972 206 61 8 chr9 9510437 9511144 -108351483 + L1MA9 LINE L1 5531 6274 -38 310 247 0 0 chr9 9511388 9511465 -108351162 - L1MC4 LINE L1 -4 8038 7962 470 278 22 28 chr9 9511798 9511978 -108350649 + Charlie8 DNA MER1_type 74 252 -2165 2181 86 0 7 chr9 9512198 9512478 -108350149 - AluY SINE Alu -6 305 28 1061 200 48 0 chr9 9512525 9512755 -108349872 + LTR40a LTR ERVL 1 241 -278 38 51 0 0 chr9 9512821 9512880 -108349747 + AT_rich Low_complexity Low_complexity 1 59 0 201 194 0 56 chr9 9513056 9513087 -108349540 + T-rich Low_complexity Low_complexity 5 36 -36 1773 136 31 0 chr9 9513087 9513344 -108349283 - AluSx SINE Alu -47 265 1 201 194 0 56 chr9 9513344 9513384 -108349243 + T-rich Low_complexity Low_complexity 36 72 0 294 354 69 33 chr9 9513488 9513850 -108348777 + L1ME3A LINE L1 5515 5889 -275 180 68 45 23 chr9 9515957 9516001 -108346626 + A-rich Low_complexity Low_complexity 1 45 0 202 98 24 49 chr9 9517611 9517652 -108344975 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 1778 165 0 13 chr9 9518490 9518799 -108343828 + AluJb SINE Alu 1 305 -7 1210 221 67 45 chr9 9518890 9519221 -108343406 - MER58B DNA MER1_type -3 338 1 296 389 32 11 chr9 9519899 9520084 -108342543 - MIR3 SINE MIR -13 195 7 22 35 0 0 chr9 9521079 9521108 -108341519 + AT_rich Low_complexity Low_complexity 1 29 0 312 306 191 25 chr9 9521109 9521308 -108341319 - MIR SINE MIR 0 262 31 207 0 0 0 chr9 9521404 9521427 -108341200 + (A)n Simple_repeat Simple_repeat 1 23 0 505 279 39 111 chr9 9523175 9523534 -108339093 - MLT1I LTR MaLR 0 409 77 325 328 102 16 chr9 9524130 9524316 -108338311 + MIR SINE MIR 13 214 -48 930 180 51 6 chr9 9525064 9525242 -108337385 + MER5A DNA MER1_type 1 186 -3 310 373 108 52 chr9 9525532 9525570 -108337057 - L2 LINE L2 -24 3248 3214 811 232 45 58 chr9 9525570 9525794 -108336833 + MER58A DNA MER1_type 4 224 0 310 373 108 52 chr9 9525794 9526042 -108336585 - L2 LINE L2 -58 3214 2946 1690 178 3 35 chr9 9527752 9528066 -108334561 - AluJo SINE Alu -8 304 1 3538 154 27 109 chr9 9530108 9531004 -108331623 + L1PB3 LINE L1 5330 6151 -3 2463 109 8 31 chr9 9531024 9531409 -108331218 + L1PB3 LINE L1 5770 6145 -9 247 291 76 0 chr9 9531682 9531761 -108330866 + L2 LINE L2 3227 3311 -2 508 247 16 70 chr9 9532686 9532872 -108329755 - MER69A DNA AcHobo -1 176 1 2021 104 35 3 chr9 9534328 9534615 -108328012 - AluSx SINE Alu -16 296 1 400 198 31 0 chr9 9534680 9534776 -108327851 + L1MA4A LINE L1 6182 6280 -23 347 183 0 118 chr9 9534919 9535012 -108327615 - MER103 DNA DNA -36 130 49 371 335 59 18 chr9 9535397 9535567 -108327060 - MER5B DNA MER1_type -1 177 1 478 319 12 0 chr9 9535694 9535854 -108326773 - MIR SINE MIR -2 260 99 3671 129 13 13 chr9 9536018 9536621 -108326006 + L1PB1 LINE L1 5546 6148 -3 192 40 0 0 chr9 9537795 9537820 -108324807 + (TTG)n Simple_repeat Simple_repeat 2 26 0 365 318 82 29 chr9 9540250 9540420 -108322207 + L2 LINE L2 3088 3266 -6 715 343 73 27 chr9 9540468 9541075 -108321552 - L2 LINE L2 -8 3264 2628 3827 178 36 99 chr9 9541175 9541774 -108320853 - MER6 DNA MER2_type 0 865 343 255 103 0 0 chr9 9541774 9541813 -108320814 + (CA)n Simple_repeat Simple_repeat 1 39 0 3827 178 36 99 chr9 9541813 9542136 -108320491 - MER6 DNA MER2_type -522 343 1 329 325 124 47 chr9 9542161 9542588 -108320039 - L2 LINE L2 -708 2606 2147 21 0 0 0 chr9 9542977 9542998 -108319629 + AT_rich Low_complexity Low_complexity 1 21 0 220 306 0 0 chr9 9543098 9543160 -108319467 + (CA)n Simple_repeat Simple_repeat 2 63 0 2089 93 18 0 chr9 9543899 9544198 -108318429 + AluSq SINE Alu 1 304 0 577 256 231 0 chr9 9544629 9544824 -108317803 + MIR SINE MIR 6 245 -17 2244 70 0 7 chr9 9546789 9547100 -108315527 - AluY SINE Alu 0 309 1 677 255 292 11 chr9 9548731 9548847 -108313780 + L2 LINE L2 2319 2401 -913 2831 16 0 3 chr9 9548847 9549161 -108313466 - AluYb8 SINE Alu -2 316 4 677 255 292 11 chr9 9549161 9549424 -108313203 + L2 LINE L2 2401 2805 -509 446 245 8 97 chr9 9549438 9549675 -108312952 + L2 LINE L2 3077 3292 -21 229 296 0 0 chr9 9550775 9550829 -108311798 + (CATA)n Simple_repeat Simple_repeat 3 56 0 23 54 0 0 chr9 9552011 9552048 -108310579 + AT_rich Low_complexity Low_complexity 1 37 0 182 375 48 10 chr9 9552195 9552299 -108310328 + MIR3 SINE MIR 69 176 -32 227 327 39 10 chr9 9552752 9552856 -108309771 - MIR SINE MIR -62 146 40 250 206 135 92 chr9 9553039 9553180 -108309447 + MIR SINE MIR 116 262 0 1109 141 0 47 chr9 9553901 9554000 -108308627 - Tigger7 DNA MER2_type -7 2480 2393 1022 178 25 5 chr9 9554000 9554202 -108308425 + MER6B DNA MER2_type 2 207 -3 1109 141 0 47 chr9 9554202 9554294 -108308333 - Tigger7 DNA MER2_type -94 2393 2298 * 1544 192 49 13 chr9 9554290 9554597 -108308030 - Tigger7 DNA MER2_type -2169 318 1 258 105 0 0 chr9 9554983 9555021 -108307606 + (A)n Simple_repeat Simple_repeat 1 38 0 2563 44 0 0 chr9 9555373 9555669 -108306958 - AluY SINE Alu -15 296 1 403 278 85 40 chr9 9555698 9555874 -108306753 + MLT1J1 LTR MaLR 36 219 -227 245 225 0 56 chr9 9555885 9556045 -108306582 + CT-rich Low_complexity Low_complexity 2 152 0 342 310 83 7 chr9 9556075 9556220 -108306407 + MLT1J2 LTR MaLR 290 445 -5 350 186 40 16 chr9 9556468 9556592 -108306035 + (TA)n Simple_repeat Simple_repeat 2 128 0 336 312 188 10 chr9 9557577 9557992 -108304635 + LTR33 LTR ERVL 1 517 -4 317 341 115 1 chr9 9558000 9558174 -108304453 - MIR3 SINE MIR -63 145 3 2064 133 7 3 chr9 9559263 9559572 -108303055 + AluSg SINE Alu 1 310 0 24 32 0 0 chr9 9561036 9561067 -108301560 + AT_rich Low_complexity Low_complexity 1 31 0 480 315 33 5 chr9 9561106 9561290 -108301337 + MER5A DNA MER1_type 1 189 0 208 238 63 48 chr9 9561373 9561436 -108301191 - MIR3 SINE MIR -18 190 127 32 26 0 0 chr9 9562144 9562183 -108300444 + AT_rich Low_complexity Low_complexity 1 39 0 1393 162 59 15 chr9 9562275 9562546 -108300081 + MER58B DNA MER1_type 56 338 -3 525 218 40 114 chr9 9562576 9562778 -108299849 + MER5A DNA MER1_type 2 188 -1 21 0 0 0 chr9 9563432 9563453 -108299174 + AT_rich Low_complexity Low_complexity 1 21 0 655 307 49 25 chr9 9563862 9564106 -108298521 + MIR SINE MIR 13 262 0 318 264 81 40 chr9 9565080 9565228 -108297399 - L2 LINE L2 -8 3305 3152 200 33 0 33 chr9 9565261 9565291 -108297336 + (TA)n Simple_repeat Simple_repeat 2 30 0 1705 133 66 0 chr9 9565291 9565562 -108297065 - AluSx SINE Alu -23 289 1 367 266 98 90 chr9 9568711 9569060 -108293567 + MLT1I LTR MaLR 19 373 -36 952 245 80 52 chr9 9569060 9569423 -108293204 - MLT1A2 LTR MaLR -1 373 1 367 266 98 90 chr9 9569423 9569461 -108293166 + MLT1I LTR MaLR 373 409 0 43 47 0 0 chr9 9571212 9571276 -108291351 + AT_rich Low_complexity Low_complexity 1 64 0 10305 177 27 30 chr9 9571882 9572497 -108290130 + L1MA7 LINE L1 2949 3565 -2726 3963 97 30 15 chr9 9572497 9573098 -108289529 - L1PA11 LINE L1 0 6174 5565 10305 177 27 30 chr9 9573098 9573123 -108289504 + L1MA7 LINE L1 3565 3589 -2702 2106 94 0 0 chr9 9573123 9573415 -108289212 + AluSg SINE Alu 14 305 0 10305 177 27 30 chr9 9573415 9576124 -108286503 + L1MA7 LINE L1 3589 6289 -2 25 31 0 0 chr9 9576301 9576333 -108286294 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr9 9576647 9576668 -108285959 + AT_rich Low_complexity Low_complexity 1 21 0 1439 346 95 39 chr9 9576981 9578757 -108283870 + L2 LINE L2 1167 3049 -223 1957 211 67 43 chr9 9578860 9579353 -108283274 - MLT1D LTR MaLR 0 505 1 308 287 23 0 chr9 9579393 9579480 -108283147 + L2 LINE L2 3225 3313 0 2101 109 7 13 chr9 9579522 9579642 -108282985 + AluSx SINE Alu 1 120 -192 342 0 0 0 chr9 9579642 9579680 -108282947 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 2101 109 7 13 chr9 9579680 9579861 -108282766 + AluSx SINE Alu 120 300 -12 261 376 105 0 chr9 9579895 9580028 -108282599 - L2 LINE L2 -4 3268 3122 310 349 11 0 chr9 9581831 9581942 -108280685 - MIR SINE MIR -78 130 14 288 0 0 0 chr9 9582119 9582151 -108280476 + (TG)n Simple_repeat Simple_repeat 1 32 0 2184 133 0 0 chr9 9582263 9582572 -108280055 + AluSp SINE Alu 1 309 -4 930 227 72 0 chr9 9582831 9583038 -108279589 + MER58A DNA MER1_type 2 223 -1 23 0 0 0 chr9 9583193 9583216 -108279411 + AT_rich Low_complexity Low_complexity 1 23 0 36 0 0 0 chr9 9583659 9583695 -108278932 + AT_rich Low_complexity Low_complexity 1 36 0 36 40 0 0 chr9 9586115 9586165 -108276462 + AT_rich Low_complexity Low_complexity 1 50 0 24 32 0 0 chr9 9586505 9586536 -108276091 + AT_rich Low_complexity Low_complexity 1 31 0 194 343 0 29 chr9 9586975 9587045 -108275582 + L2 LINE L2 3246 3313 0 851 275 115 50 chr9 9587471 9588021 -108274606 + L2 LINE L2 2457 3039 -274 1802 154 11 76 chr9 9588189 9588558 -108274069 - MER7A DNA MER2_type -2 344 2 195 167 146 0 chr9 9588646 9588694 -108273933 + L2 LINE L2 3180 3234 -38 363 301 89 14 chr9 9588964 9589110 -108273517 + L2 LINE L2 3152 3308 -5 27 29 0 0 chr9 9589549 9589583 -108273044 + AT_rich Low_complexity Low_complexity 1 34 0 1768 201 22 3 chr9 9589633 9589991 -108272636 + MLT1A1 LTR MaLR 1 365 0 2373 97 0 7 chr9 9590131 9590441 -108272186 + AluSg SINE Alu 1 308 -2 1779 203 39 21 chr9 9591307 9591696 -108270931 + MSTD LTR MaLR 1 396 0 2179 124 18 47 chr9 9591801 9592187 -108270440 - THE1C LTR MaLR 0 375 1 515 284 88 42 chr9 9592642 9592881 -108269746 + L3 LINE CR1 998 1247 -330 202 265 0 0 chr9 9592887 9592936 -108269691 + L3 LINE CR1 1363 1411 -166 354 202 18 18 chr9 9593078 9593187 -108269440 + CT-rich Low_complexity Low_complexity 4 112 0 291 321 80 15 chr9 9593225 9593362 -108269265 + MIR3 SINE MIR 52 197 -11 189 315 117 63 chr9 9594346 9594457 -108268170 - L2 LINE L2 -3 3269 3153 407 254 238 22 chr9 9594571 9594756 -108267871 + MIR SINE MIR 28 252 -10 4467 38 0 0 chr9 9594864 9595398 -108267229 + L1PA4 LINE L1 5619 6152 -3 244 333 14 0 chr9 9595578 9595650 -108266977 + L3 LINE CR1 411 483 -1094 227 319 138 26 chr9 9595805 9595921 -108266706 + MIR3 SINE MIR 11 139 -69 201 129 0 0 chr9 9595961 9595992 -108266635 + MIR SINE MIR 220 250 -12 21 36 0 0 chr9 9596260 9596288 -108266339 + AT_rich Low_complexity Low_complexity 1 28 0 527 289 96 23 chr9 9596293 9596511 -108266116 - MIR SINE MIR -4 258 25 210 314 0 0 chr9 9598120 9598171 -108264456 - L2 LINE L2 -85 3187 3137 203 272 111 12 chr9 9598195 9598276 -108264351 - MIR SINE MIR -74 188 100 378 200 156 0 chr9 9599035 9599125 -108263502 + MLT1J2 LTR MaLR 1 104 -346 280 250 39 86 chr9 9599319 9599447 -108263180 + MLT1J2 LTR MaLR 311 432 -18 199 359 10 78 chr9 9599464 9599567 -108263060 + L2 LINE L2 3141 3236 -36 1026 213 0 5 chr9 9601204 9601392 -108261235 + AluJb SINE Alu 87 273 -39 498 46 0 0 chr9 9601392 9601457 -108261170 + (TC)n Simple_repeat Simple_repeat 1 65 0 26 0 0 0 chr9 9601778 9601804 -108260823 + AT_rich Low_complexity Low_complexity 1 26 0 204 200 0 0 chr9 9602364 9602409 -108260218 + CT-rich Low_complexity Low_complexity 1 45 0 186 103 0 0 chr9 9602598 9602627 -108260000 + (TG)n Simple_repeat Simple_repeat 2 30 0 1012 233 90 23 chr9 9602728 9603316 -108259311 - L1ME3A LINE L1 -20 6150 5490 329 0 24 0 chr9 9603599 9603640 -108258987 + (TG)n Simple_repeat Simple_repeat 1 42 0 476 335 44 0 chr9 9604022 9604180 -108258447 - MIR3 SINE MIR -7 201 37 403 383 47 34 chr9 9604234 9604532 -108258095 + L2 LINE L2 2970 3271 -1 558 258 140 6 chr9 9604618 9604796 -108257831 + MLT1I LTR MaLR 17 218 -191 1780 216 39 23 chr9 9604847 9605036 -108257591 + MSTD LTR MaLR 2 187 -209 2173 70 138 0 chr9 9605036 9605348 -108257279 + THE1A LTR MaLR 1 355 0 1780 216 39 23 chr9 9605348 9605547 -108257080 + MSTD LTR MaLR 187 396 0 384 306 37 0 chr9 9605548 9605656 -108256971 + MLT1I LTR MaLR 295 406 -3 225 213 16 0 chr9 9605657 9605718 -108256909 + MST-int LTR MaLR 1560 1621 -30 1284 231 61 112 chr9 9605745 9606343 -108256284 + MLT1F1 LTR MaLR 1 567 0 23 0 0 0 chr9 9606545 9606568 -108256059 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr9 9607937 9607963 -108254664 + AT_rich Low_complexity Low_complexity 1 26 0 7355 129 31 2 chr9 9608202 9609399 -108253228 - Tigger3b DNA MER2_type 0 1231 1 227 162 0 73 chr9 9609790 9609858 -108252769 + L1MC4 LINE L1 6641 6703 -1339 * 266 228 127 0 chr9 9609826 9609905 -108252722 + L1MC4 LINE L1 6614 6702 -1340 222 316 122 10 chr9 9610833 9610931 -108251696 + MIR SINE MIR 43 151 -57 503 350 9 27 chr9 9611297 9611520 -108251107 + MIR SINE MIR 31 249 -13 2590 207 42 10 chr9 9611578 9612173 -108250454 + MER90 LTR ERV1 1 614 0 2163 108 0 0 chr9 9612215 9612501 -108250126 - AluSx SINE Alu -26 286 1 180 200 0 0 chr9 9612576 9612611 -108250016 + L2 LINE L2 3238 3272 0 25 51 0 0 chr9 9614574 9614613 -108248014 + AT_rich Low_complexity Low_complexity 1 39 0 252 311 152 8 chr9 9614658 9614790 -108247837 + MIR SINE MIR 28 178 -84 243 307 84 58 chr9 9614916 9615141 -108247486 + MLT1K LTR MaLR 336 566 -22 326 270 165 23 chr9 9615239 9615414 -108247213 - MIR3 SINE MIR -11 251 26 836 122 0 0 chr9 9617904 9618019 -108244608 + AluSp/q SINE Alu 167 281 -32 264 30 0 0 chr9 9618021 9618054 -108244573 + (CA)n Simple_repeat Simple_repeat 2 34 0 719 294 54 67 chr9 9620534 9621223 -108241404 - L2 LINE L2 0 3313 2624 2023 157 45 42 chr9 9621225 9621766 -108240861 + MLT2A2 LTR ERVL 1 554 0 1132 310 27 10 chr9 9621766 9622179 -108240448 - L2 LINE L2 -688 2626 2207 1545 279 12 34 chr9 9622291 9622785 -108239842 + L1MC5 LINE L1 5453 5935 -1873 2325 69 16 0 chr9 9622826 9623132 -108239495 - AluY SINE Alu 0 311 1 1635 240 97 68 chr9 9623396 9623628 -108238999 + L1MC5 LINE L1 7008 7232 -729 2331 77 0 3 chr9 9623628 9623926 -108238701 - AluY SINE Alu -14 297 1 1635 240 97 68 chr9 9623926 9624572 -108238055 + L1MC5 LINE L1 7232 7911 -50 21 0 0 0 chr9 9624578 9624599 -108238028 + AT_rich Low_complexity Low_complexity 1 21 0 1984 225 89 7 chr9 9624602 9625060 -108237567 - LTR40a LTR ERVL -18 501 6 21 0 0 0 chr9 9625262 9625283 -108237344 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 9625749 9625770 -108236857 + AT_rich Low_complexity Low_complexity 1 21 0 228 86 0 0 chr9 9625890 9625925 -108236702 + (TG)n Simple_repeat Simple_repeat 2 36 0 631 344 27 19 chr9 9626018 9626274 -108236353 + MIR SINE MIR 4 261 -1 255 61 0 0 chr9 9626282 9626315 -108236312 + (TTCC)n Simple_repeat Simple_repeat 4 36 0 411 21 0 0 chr9 9626330 9626378 -108236249 + (CA)n Simple_repeat Simple_repeat 1 48 0 530 302 15 42 chr9 9626515 9626783 -108235844 - MIR SINE MIR 0 262 3 14134 83 3 2 chr9 9677001 9679744 -108182883 + L1PA7 LINE L1 3415 6152 -2 27434 64 4 12 chr9 9680536 9685049 -108177578 + L1PA6 LINE L1 1675 6148 -6 302 257 29 0 chr9 9685070 9685140 -108177487 - SATR1 Satellite Satellite -387 83 12 8788 41 0 0 chr9 9685243 9687125 -108175502 + L1PA3 LINE L1 4283 6152 -3 35399 44 1 4 chr9 9688074 9692429 -108170198 - L1P LINE L1 -1802 4344 2 1168 279 97 3 chr9 9692605 9692988 -108169639 + L2 LINE L2 2016 2434 -880 14569 126 14 5 chr9 9693183 9695572 -108167055 + L1P LINE L1 952 3360 -2786 2169 164 38 75 chr9 9695674 9696141 -108166486 - L1MC3 LINE L1 -709 7076 6630 3216 191 99 6 chr9 9696141 9696810 -108165817 - MER44D DNA MER2_type -2 603 1 2169 164 38 75 chr9 9696810 9696891 -108165736 - L1MC3 LINE L1 -1155 6630 6548 1087 235 45 79 chr9 9696918 9697322 -108165305 + MLT1B LTR MaLR 1 390 0 21 71 0 0 chr9 9697348 9697390 -108165237 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chr9 9697534 9697562 -108165065 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr9 9700085 9700106 -108162521 + AT_rich Low_complexity Low_complexity 1 21 0 374 223 96 0 chr9 9700360 9700454 -108162173 - MIR SINE MIR -28 234 132 210 281 35 0 chr9 9700489 9700546 -108162081 + L2 LINE L2 3214 3272 0 201 351 20 20 chr9 9700555 9700703 -108161924 - L2 LINE L2 -828 2486 2339 955 166 71 33 chr9 9701781 9701992 -108160635 + MER20 DNA MER1_type 1 219 0 463 348 80 26 chr9 9702591 9702930 -108159697 + L2 LINE L2 2620 2976 -338 1702 198 19 19 chr9 9702983 9703347 -108159280 + MLT1A1 LTR MaLR 2 365 0 380 324 0 9 chr9 9703469 9703580 -108159047 + L2 LINE L2 3143 3252 -20 21 0 0 0 chr9 9704887 9704908 -108157719 + AT_rich Low_complexity Low_complexity 1 21 0 222 37 0 0 chr9 9705099 9705126 -108157501 + (T)n Simple_repeat Simple_repeat 1 27 0 333 264 63 38 chr9 9706420 9706579 -108156048 - HAL1 LINE L1 -14 2493 2331 482 304 101 34 chr9 9706588 9706884 -108155743 - L2 LINE L2 0 3313 2998 749 281 83 112 chr9 9706899 9707855 -108154772 - HAL1 LINE L1 -1577 930 3 242 308 54 39 chr9 9707863 9707993 -108154634 - L2 LINE L2 -4 3268 3137 1185 210 60 111 chr9 9708108 9708541 -108154086 + MLT1C LTR MaLR 53 463 -4 2285 104 3 3 chr9 9708790 9709098 -108153529 + AluSx SINE Alu 1 308 -4 424 374 33 39 chr9 9710126 9710458 -108152169 + L2 LINE L2 2647 2976 -338 2122 106 0 0 chr9 9713144 9713473 -108149154 + AluSp SINE Alu 1 329 0 188 312 119 9 chr9 9713675 9713784 -108148843 - MIR SINE MIR -81 181 61 208 316 0 61 chr9 9714657 9714755 -108147872 - MIR SINE MIR -71 191 100 4607 167 37 7 chr9 9714903 9715740 -108146887 + MER6 DNA MER2_type 1 862 -3 245 322 0 35 chr9 9717088 9717175 -108145452 + L2 LINE L2 3188 3271 -1 216 0 0 0 chr9 9718342 9718366 -108144261 + (T)n Simple_repeat Simple_repeat 1 24 0 311 335 183 33 chr9 9719778 9720237 -108142390 + L2 LINE L2 2249 2776 -538 2196 107 10 3 chr9 9720398 9720706 -108141921 + AluSp SINE Alu 1 310 -3 230 156 0 0 chr9 9720711 9720756 -108141871 + A-rich Low_complexity Low_complexity 4 48 0 21 36 0 0 chr9 9722933 9722961 -108139666 + AT_rich Low_complexity Low_complexity 1 28 0 2075 113 7 0 chr9 9723782 9724075 -108138552 + AluSp SINE Alu 1 295 -18 580 335 66 9 chr9 9724144 9724371 -108138256 + MIR SINE MIR 11 250 -12 375 339 79 21 chr9 9724794 9724983 -108137644 - MIR SINE MIR -15 247 48 21 0 0 0 chr9 9725469 9725490 -108137137 + AT_rich Low_complexity Low_complexity 1 21 0 382 297 85 18 chr9 9725845 9726010 -108136617 - MIR SINE MIR -64 198 23 12680 59 0 1 chr9 9726204 9728596 -108134031 - L1PA6 LINE L1 -4 6150 3758 262 342 0 0 chr9 9728939 9729018 -108133609 - MIR SINE MIR -113 149 71 1680 76 22 0 chr9 9730313 9730538 -108132089 + MER30 DNA MER1_type 1 230 0 1903 161 3 3 chr9 9731134 9731445 -108131182 - AluSx SINE Alu 0 312 2 228 100 0 0 chr9 9731746 9731786 -108130841 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 311 48 48 16 chr9 9735864 9735927 -108126700 + (TA)n Simple_repeat Simple_repeat 1 65 0 221 377 9 38 chr9 9735978 9736084 -108126543 + MIR3 SINE MIR 4 106 -102 415 286 96 11 chr9 9736961 9737139 -108125488 + MIR SINE MIR 63 255 -7 216 111 0 0 chr9 9737143 9737179 -108125448 + (CAT)n Simple_repeat Simple_repeat 2 37 0 24 32 0 0 chr9 9737957 9737988 -108124639 + AT_rich Low_complexity Low_complexity 1 31 0 195 244 22 0 chr9 9738137 9738182 -108124445 - MIR3 SINE MIR -36 172 127 29 70 0 0 chr9 9740859 9740916 -108121711 + AT_rich Low_complexity Low_complexity 1 57 0 1676 76 0 4 chr9 9741095 9741320 -108121307 - L1PA7 LINE L1 -3 6151 5928 1992 72 0 34 chr9 9741596 9741861 -108120766 + AluY SINE Alu 1 256 -55 192 328 16 0 chr9 9741952 9742013 -108120614 + L2 LINE L2 3251 3312 -1 22 0 0 0 chr9 9744192 9744214 -108118413 + AT_rich Low_complexity Low_complexity 1 22 0 1967 153 0 3 chr9 9744214 9744509 -108118118 - AluSx SINE Alu -18 294 1 6097 50 11 27 chr9 9745111 9745928 -108116699 - L1PA7 LINE L1 0 6154 5351 2436 87 3 3 chr9 9746561 9746906 -108115721 + L1PA8 LINE L1 5826 6170 -2 38 39 0 0 chr9 9747143 9747195 -108115432 + AT_rich Low_complexity Low_complexity 1 52 0 27 49 0 0 chr9 9747628 9747669 -108114958 + AT_rich Low_complexity Low_complexity 1 41 0 528 316 26 74 chr9 9748033 9748302 -108114325 + MIR SINE MIR 7 262 0 2186 117 0 0 chr9 9749094 9749393 -108113234 - AluSq SINE Alu -14 299 1 675 255 0 13 chr9 9749423 9749576 -108113051 + AluJb SINE Alu 139 289 -23 294 167 0 0 chr9 9749705 9749765 -108112862 + (TA)n Simple_repeat Simple_repeat 1 60 0 188 188 0 0 chr9 9751551 9751583 -108111044 + L2 LINE L2 2705 2736 -578 348 344 110 0 chr9 9754151 9754314 -108108313 + MIR SINE MIR 11 191 -71 510 211 0 19 chr9 9754406 9754510 -108108117 - AluJ/FLAM SINE Alu -210 102 1 357 336 66 5 chr9 9754512 9754723 -108107904 - L1MC4a LINE L1 -1906 5902 5679 390 159 0 0 chr9 9754728 9754797 -108107830 + (TG)n Simple_repeat Simple_repeat 2 70 0 346 364 19 6 chr9 9755740 9755902 -108106725 - MIR3 SINE MIR 0 208 45 1468 243 98 17 chr9 9756140 9756723 -108105904 - MLT1E3 LTR MaLR 0 624 1 928 290 120 40 chr9 9756931 9757496 -108105131 - L2 LINE L2 -38 3275 2670 430 202 67 10 chr9 9757500 9757604 -108105023 - L1MA10 LINE L1 -58 6276 6167 3244 277 46 19 chr9 9757674 9758766 -108103861 - L2 LINE L2 -638 2676 1556 321 381 39 0 chr9 9759070 9759225 -108103402 + MIR3 SINE MIR 20 180 -28 23 0 0 0 chr9 9760105 9760128 -108102499 + AT_rich Low_complexity Low_complexity 1 23 0 181 316 82 20 chr9 9762195 9762293 -108100334 - L2 LINE L2 -5 3267 3164 890 181 102 0 chr9 9763923 9764128 -108098499 - L1MA4 LINE L1 0 6300 6075 225 299 52 10 chr9 9764236 9764333 -108098294 - L2 LINE L2 -13 3300 3200 21 0 0 0 chr9 9764689 9764710 -108097917 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 9765512 9765533 -108097094 + AT_rich Low_complexity Low_complexity 1 21 0 193 261 0 0 chr9 9766203 9766249 -108096378 - MIR SINE MIR -120 142 97 1117 293 103 41 chr9 9766670 9767501 -108095126 - L2 LINE L2 -43 3270 2392 371 325 52 13 chr9 9770570 9770724 -108091903 + MIR SINE MIR 47 206 -56 28898 32 1 1 chr9 9771163 9775292 -108087335 - L1PA4 LINE L1 -3 6152 1872 242 313 90 14 chr9 9775298 9775442 -108087185 - L1ME LINE L1 -484 5637 5483 514 294 0 0 chr9 9775545 9775671 -108086956 + MIR SINE MIR 4 129 -133 1431 227 135 33 chr9 9775781 9776239 -108086388 - MLT1D LTR MaLR 0 505 1 338 315 80 0 chr9 9776243 9776405 -108086222 - L1ME LINE L1 -813 5333 5159 216 97 0 0 chr9 9777472 9777503 -108085124 + (TG)n Simple_repeat Simple_repeat 2 32 0 2055 195 64 26 chr9 9777553 9777717 -108084910 + L1MB4 LINE L1 5660 5816 -364 2215 114 3 0 chr9 9777717 9778024 -108084603 + AluSg SINE Alu 1 308 -2 2055 195 64 26 chr9 9778024 9778370 -108084257 + L1MB4 LINE L1 5816 6179 -1 368 304 185 5 chr9 9779833 9780017 -108082610 - MIR SINE MIR 0 262 46 4482 214 73 10 chr9 9780312 9781597 -108081030 - L1MC2 LINE L1 -16 6608 5126 255 39 20 39 chr9 9781597 9781648 -108080979 + (TA)n Simple_repeat Simple_repeat 2 51 0 4482 214 73 10 chr9 9781648 9782611 -108080016 - L1MC2 LINE L1 -1498 5126 4225 2528 227 19 34 chr9 9782618 9782777 -108079850 - L1MC2 LINE L1 -3145 3281 3121 775 42 0 0 chr9 9782777 9782873 -108079754 - L1MA1 LINE L1 0 6302 6207 2528 227 19 34 chr9 9782873 9783760 -108078867 - L1MC2 LINE L1 -3305 3121 2252 1741 161 38 0 chr9 9783760 9784051 -108078576 - AluJb SINE Alu -8 304 3 261 145 0 0 chr9 9784073 9784135 -108078492 + (T)n Simple_repeat Simple_repeat 1 62 0 2123 215 6 18 chr9 9784169 9784676 -108077951 - L1 LINE L1 -1389 4757 4257 * 2835 187 69 11 chr9 9784675 9785445 -108077182 + L1MB1 LINE L1 5051 5882 -307 190 301 53 35 chr9 9785610 9785723 -108076904 + L2 LINE L2 3184 3298 -15 303 336 92 34 chr9 9786097 9786389 -108076238 - MLT1I LTR MaLR -2 407 99 369 0 0 0 chr9 9786744 9786785 -108075842 + (T)n Simple_repeat Simple_repeat 1 41 0 316 362 71 14 chr9 9788110 9788320 -108074307 - MIR SINE MIR -36 226 5 318 242 0 0 chr9 9789876 9789942 -108072685 - L1M4c LINE L1 -4713 1671 1606 947 130 0 43 chr9 9790087 9790249 -108072378 - LTR1 LTR ERV1 0 785 631 1895 129 57 9 chr9 9790276 9790798 -108071829 - LTR1 LTR ERV1 -146 639 1 322 257 14 0 chr9 9790864 9790934 -108071693 + MER94 DNA DNA 64 134 0 29 0 0 0 chr9 9791094 9791123 -108071504 + AT_rich Low_complexity Low_complexity 1 29 0 669 210 28 55 chr9 9791426 9791607 -108071020 + MIR SINE MIR 86 261 -1 2108 116 20 0 chr9 9791629 9791930 -108070697 + AluSp SINE Alu 1 307 -6 581 313 103 34 chr9 9792179 9792725 -108069902 - L2 LINE L2 -1 3312 2728 25 0 0 0 chr9 9792944 9792969 -108069658 + AT_rich Low_complexity Low_complexity 1 25 0 256 261 77 69 chr9 9793146 9793276 -108069351 + MIR SINE MIR 52 182 -80 1431 189 101 1 chr9 9795286 9795594 -108067033 + MER61B LTR ERV1 1 425 0 342 247 34 0 chr9 9795967 9796056 -108066571 + MLT1H LTR MaLR 458 549 0 467 313 92 5 chr9 9796058 9796253 -108066374 + MIR SINE MIR 49 260 -2 382 336 30 0 chr9 9796691 9796822 -108065805 + L2 LINE L2 3179 3313 0 668 282 116 0 chr9 9796848 9797064 -108065563 + MIR SINE MIR 21 261 -1 191 333 40 0 chr9 9797189 9797264 -108065363 + MER5B DNA MER1_type 1 78 -100 419 219 0 0 chr9 9797623 9797704 -108064923 + MER5A DNA MER1_type 4 84 -105 317 291 46 69 chr9 9797709 9797884 -108064743 - MER5B DNA MER1_type -1 177 7 397 306 140 6 chr9 9798690 9798847 -108063780 + MER5A DNA MER1_type 10 187 -2 276 186 0 0 chr9 9800481 9800540 -108062087 + CT-rich Low_complexity Low_complexity 1 59 0 25 31 0 0 chr9 9801096 9801128 -108061499 + AT_rich Low_complexity Low_complexity 1 32 0 2272 112 0 92 chr9 9801940 9802341 -108060286 + THE1B LTR MaLR 1 364 0 23 0 0 0 chr9 9803435 9803458 -108059169 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr9 9803529 9803557 -108059070 + AT_rich Low_complexity Low_complexity 1 28 0 192 217 0 0 chr9 9803670 9803716 -108058911 + (CATATA)n Simple_repeat Simple_repeat 5 50 0 2336 131 11 8 chr9 9804051 9804425 -108058202 + THE1C LTR MaLR 1 375 0 818 289 122 30 chr9 9804533 9805364 -108057263 + L1MEd LINE L1 43 1130 -4989 225 83 0 0 chr9 9805367 9805403 -108057224 + (A)n Simple_repeat Simple_repeat 1 36 0 1940 156 0 10 chr9 9805409 9805723 -108056904 + AluSx SINE Alu 2 312 0 213 39 0 0 chr9 9805810 9805836 -108056791 + (TC)n Simple_repeat Simple_repeat 1 26 0 35 24 0 0 chr9 9806064 9806106 -108056521 + AT_rich Low_complexity Low_complexity 1 42 0 1515 291 132 48 chr9 9806107 9807242 -108055385 - L2 LINE L2 -1 3312 2094 541 269 54 21 chr9 9809305 9809491 -108053136 + MIR SINE MIR 4 195 -67 662 295 49 16 chr9 9809522 9809827 -108052800 - L1ME3A LINE L1 -192 5978 5664 401 363 81 4 chr9 9809985 9810219 -108052408 + MIR SINE MIR 5 256 -6 232 343 0 0 chr9 9811160 9811233 -108051394 + MIR SINE MIR 175 247 -15 314 400 22 17 chr9 9811879 9812109 -108050518 + L1MEd LINE L1 561 791 -5328 204 40 0 0 chr9 9813442 9813467 -108049160 + (TG)n Simple_repeat Simple_repeat 2 26 0 364 218 40 50 chr9 9814303 9814404 -108048223 - MIR3 SINE MIR -32 176 77 183 80 0 0 chr9 9814535 9814560 -108048067 + (TTTTC)n Simple_repeat Simple_repeat 4 28 0 2907 9 0 0 chr9 9815498 9815814 -108046813 - AluYb8 SINE Alu -2 316 1 408 349 42 16 chr9 9816062 9816251 -108046376 + MIR SINE MIR 57 250 -12 206 394 55 0 chr9 9817128 9817255 -108045372 - L2 LINE L2 0 3272 3139 664 244 37 30 chr9 9817300 9817464 -108045163 + MER45A DNA AcHobo 4 168 -10 192 275 73 73 chr9 9817505 9817614 -108045013 - L2 LINE L2 -167 3146 3038 1771 173 0 0 chr9 9817615 9817904 -108044723 + AluSg SINE Alu 22 310 0 183 254 56 14 chr9 9818292 9818363 -108044264 - L2 LINE L2 -309 2963 2890 283 389 92 11 chr9 9818418 9818701 -108043926 + L2 LINE L2 2444 2749 -565 330 316 34 8 chr9 9818711 9818828 -108043799 + MIR SINE MIR 13 132 -130 202 325 70 13 chr9 9818912 9819069 -108043558 + L2 LINE L2 2764 2929 -385 181 386 45 0 chr9 9819120 9819208 -108043419 - MIR SINE MIR -105 157 66 288 248 91 33 chr9 9820129 9820250 -108042377 + MIR SINE MIR 97 224 -38 431 324 65 12 chr9 9820875 9821045 -108041582 + MIR SINE MIR 23 201 -61 333 0 0 0 chr9 9821529 9821566 -108041061 + (CA)n Simple_repeat Simple_repeat 2 38 0 25 0 0 0 chr9 9822425 9822450 -108040177 + AT_rich Low_complexity Low_complexity 1 25 0 278 301 109 43 chr9 9822901 9823177 -108039450 + L1ME LINE L1 5572 5865 -256 363 258 16 121 chr9 9823399 9823581 -108039046 - MER91B DNA MER1_type -27 163 1 29 0 0 0 chr9 9823740 9823769 -108038858 + AT_rich Low_complexity Low_complexity 1 29 0 193 266 31 0 chr9 9824179 9824243 -108038384 + L2 LINE L2 3236 3301 -12 216 200 0 53 chr9 9824330 9824405 -108038222 + A-rich Low_complexity Low_complexity 2 72 0 705 238 17 50 chr9 9824488 9824669 -108037958 - MIR SINE MIR -10 252 78 1264 207 120 20 chr9 9825580 9825917 -108036710 + MLT1A2 LTR MaLR 4 463 -4 435 306 56 21 chr9 9825954 9826330 -108036297 + L1MEd LINE L1 753 1141 -4978 672 261 125 0 chr9 9826528 9826712 -108035915 + LTR16A LTR ERVL 231 437 -13 338 246 115 4 chr9 9827093 9827228 -108035399 + L1 LINE L1 4217 4362 -1784 554 327 47 14 chr9 9827320 9827534 -108035093 + MLT1H LTR MaLR 85 305 -244 208 110 64 37 chr9 9827758 9827867 -108034760 + (TATAA)n Simple_repeat Simple_repeat 5 116 0 441 147 0 0 chr9 9827880 9827955 -108034672 - MADE1 DNA Mariner -5 75 1 15815 93 2 4 chr9 9828322 9830503 -108032124 + L1P LINE L1 1 2176 -3970 40644 71 3 2 chr9 9830647 9836816 -108025811 + L1PA5 LINE L1 1 6179 0 2136 168 10 22 chr9 9839018 9839435 -108023192 + L1 LINE L1 4419 4830 -1316 299 150 33 0 chr9 9839432 9839492 -108023135 + L1MA6 LINE L1 6230 6291 -9 * 214 169 31 15 chr9 9839557 9839622 -108023005 + (TTATA)n Simple_repeat Simple_repeat 4 69 0 1478 157 45 63 chr9 9839954 9840240 -108022387 + AluJo SINE Alu 1 281 -31 27 29 0 0 chr9 9840427 9840461 -108022166 + AT_rich Low_complexity Low_complexity 1 34 0 495 303 95 35 chr9 9840807 9841124 -108021503 + LTR16C LTR ERVL 156 491 0 23 0 0 0 chr9 9842210 9842233 -108020394 + AT_rich Low_complexity Low_complexity 1 23 0 1309 202 33 85 chr9 9842620 9842986 -108019641 - MLT1B LTR MaLR -42 348 2 586 276 13 0 chr9 9844502 9844658 -108017969 - MIR SINE MIR -53 209 52 23 0 0 0 chr9 9845008 9845031 -108017596 + AT_rich Low_complexity Low_complexity 1 23 0 950 317 50 12 chr9 9845583 9845987 -108016640 - LTR16A LTR ERVL -31 419 1 2121 13 0 0 chr9 9847255 9847490 -108015137 + 7SLRNA srpRNA srpRNA 1 235 -85 254 313 10 20 chr9 9848090 9848189 -108014438 + (TATG)n Simple_repeat Simple_repeat 1 98 0 180 0 0 0 chr9 9848438 9848458 -108014169 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 190 329 0 94 chr9 9848463 9848548 -108014079 - L3b LINE CR1 -24 1559 1483 930 306 122 31 chr9 9848570 9849079 -108013548 + MLT1H1 LTR MaLR 1 555 0 2665 96 8 8 chr9 9850622 9850997 -108011630 - THE1C LTR MaLR 0 375 1 286 245 10 69 chr9 9851753 9851855 -108010772 - L2 LINE L2 -9 3304 3209 5776 109 7 9 chr9 9851855 9852870 -108009757 + L1PA13 LINE L1 5136 6149 -14 944 337 117 10 chr9 9852982 9853374 -108009253 - L2 LINE L2 -340 2974 2541 180 403 16 23 chr9 9853402 9853436 -108009191 - L2 LINE L2 0 3313 3280 1627 146 52 78 chr9 9853436 9853819 -108008808 + THE1C LTR MaLR 1 373 -2 180 403 16 23 chr9 9853819 9853913 -108008714 - L2 LINE L2 -33 3280 3186 4838 110 19 3 chr9 9854932 9855291 -108007336 - L1PB2 LINE L1 0 6151 5799 381 22 0 0 chr9 9855291 9855337 -108007290 + (TG)n Simple_repeat Simple_repeat 2 47 0 4838 110 19 3 chr9 9855337 9855703 -108006924 - L1PB2 LINE L1 -352 5799 5414 417 70 0 0 chr9 9856134 9856191 -108006436 + (CA)n Simple_repeat Simple_repeat 2 58 0 22 70 0 0 chr9 9856525 9856568 -108006059 + AT_rich Low_complexity Low_complexity 1 43 0 592 319 79 45 chr9 9856667 9857167 -108005460 + L1MEd LINE L1 604 1145 -4974 341 339 34 21 chr9 9857210 9857535 -108005092 + L1MEd LINE L1 1230 1558 -4752 26 30 0 0 chr9 9858583 9858616 -108004011 + AT_rich Low_complexity Low_complexity 1 33 0 844 260 10 0 chr9 9859382 9859590 -108003037 + MER63A DNA MER1_type 1 210 0 246 297 54 0 chr9 9859937 9860011 -108002616 - L2 LINE L2 -7 3265 3188 276 100 0 0 chr9 9860026 9860066 -108002561 + (TA)n Simple_repeat Simple_repeat 2 41 0 34 0 0 0 chr9 9860472 9860506 -108002121 + AT_rich Low_complexity Low_complexity 1 34 0 25 51 0 0 chr9 9860583 9860622 -108002005 + AT_rich Low_complexity Low_complexity 1 39 0 595 346 35 4 chr9 9861820 9862074 -108000553 - MIR SINE MIR 0 262 1 1502 206 7 0 chr9 9863866 9864153 -107998474 + AluJb SINE Alu 12 300 -12 483 229 0 9 chr9 9864330 9864439 -107998188 + L1PB4 LINE L1 744 851 -5353 * 5544 196 24 4 chr9 9864429 9866516 -107996111 + L1PB4 LINE L1 4073 6197 -16 329 345 131 35 chr9 9867031 9867344 -107995283 + L2 LINE L2 2966 3308 -5 234 294 0 11 chr9 9868556 9868648 -107993979 + GA-rich Low_complexity Low_complexity 1 91 0 778 217 30 30 chr9 9868830 9868927 -107993700 - L1PA16 LINE L1 0 6166 6070 2777 174 8 4 chr9 9868927 9869422 -107993205 + LOR1a LTR ERV1 1 497 0 778 217 30 30 chr9 9869422 9869527 -107993100 - L1PA16 LINE L1 -95 6071 5964 1575 203 3 3 chr9 9871222 9871508 -107991119 + AluJb SINE Alu 1 286 -26 22 0 0 0 chr9 9871887 9871909 -107990718 + AT_rich Low_complexity Low_complexity 1 22 0 313 299 59 21 chr9 9872026 9872213 -107990414 - L1M4 LINE L1 -1430 4716 4523 216 0 0 0 chr9 9872409 9872433 -107990194 + (T)n Simple_repeat Simple_repeat 1 24 0 2062 131 3 0 chr9 9872501 9872806 -107989821 + AluSx SINE Alu 1 306 -6 429 296 107 67 chr9 9872948 9873502 -107989125 - L1M4 LINE L1 -2229 3917 3342 303 290 137 48 chr9 9873706 9874020 -107988607 - L1M4 LINE L1 -3037 3109 2768 915 172 90 37 chr9 9874229 9874497 -107988130 + MER33 DNA MER1_type 27 308 -16 2801 16 0 0 chr9 9877500 9877813 -107984814 - AluYb8 SINE Alu -5 313 1 5291 188 36 12 chr9 9878146 9880269 -107982358 - L1MA5 LINE L1 0 6300 4126 365 318 68 21 chr9 9880755 9880947 -107981680 - MLT1K LTR MaLR -34 554 354 250 373 47 18 chr9 9881003 9881172 -107981455 - MER5A DNA MER1_type -1 188 15 185 274 129 65 chr9 9881405 9881529 -107981098 - MIR SINE MIR -61 147 16 2095 127 7 0 chr9 9882036 9882344 -107980283 - AluSp SINE Alu -3 310 1 413 257 203 7 chr9 9883720 9883868 -107978759 - MIR SINE MIR -12 250 74 22 70 0 0 chr9 9883993 9884036 -107978591 + AT_rich Low_complexity Low_complexity 1 43 0 258 32 0 0 chr9 9884731 9884762 -107977865 + (CA)n Simple_repeat Simple_repeat 1 31 0 205 330 32 0 chr9 9884863 9884957 -107977670 - MIR SINE MIR -71 191 95 266 0 0 29 chr9 9885109 9885144 -107977483 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 277 318 70 31 chr9 9886316 9886445 -107976182 + MIR SINE MIR 68 201 -61 291 54 0 0 chr9 9886472 9886509 -107976118 + (ATG)n Simple_repeat Simple_repeat 3 39 0 216 361 60 8 chr9 9886666 9886799 -107975828 + MIR SINE MIR 51 190 -72 926 185 58 62 chr9 9886830 9887106 -107975521 - ORSL DNA AcHobo 0 275 1 382 149 0 0 chr9 9887749 9887816 -107974811 - L1MC2 LINE L1 -2 6342 6276 23 78 0 0 chr9 9889507 9889558 -107973069 + AT_rich Low_complexity Low_complexity 1 51 0 923 253 54 54 chr9 9889568 9889940 -107972687 + L1ME3 LINE L1 5789 6160 -2 736 312 40 8 chr9 9889944 9890194 -107972433 - MIR SINE MIR -3 259 2 2313 110 0 0 chr9 9891251 9891561 -107971066 + AluSg SINE Alu 1 310 0 202 338 0 0 chr9 9891888 9891962 -107970665 + T-rich Low_complexity Low_complexity 3 76 0 265 323 136 39 chr9 9892078 9892335 -107970292 + L2 LINE L2 3008 3289 -24 32 26 0 0 chr9 9892373 9892412 -107970215 + AT_rich Low_complexity Low_complexity 1 39 0 4058 42 0 0 chr9 9892440 9892936 -107969691 - L1PA4 LINE L1 0 6155 5660 22 0 0 0 chr9 9893058 9893080 -107969547 + AT_rich Low_complexity Low_complexity 1 22 0 11090 215 70 31 chr9 9893974 9898054 -107964573 + L1MB3 LINE L1 6 4246 -2136 2578 188 19 0 chr9 9898054 9898532 -107964095 + Tigger1 DNA MER2_type 1 487 -1931 5610 152 25 34 chr9 9898534 9898889 -107963738 + Tigger1 DNA MER2_type 1123 1479 -939 2503 72 0 0 chr9 9898889 9899196 -107963431 + AluY SINE Alu 3 309 -2 5610 152 25 34 chr9 9899196 9899911 -107962716 + Tigger1 DNA MER2_type 1479 2184 -234 2514 230 95 7 chr9 9899911 9900598 -107962029 + L1MB3 LINE L1 4539 5285 -1097 2317 189 111 34 chr9 9900790 9901516 -107961111 + LTR28 LTR ERV1 204 1020 0 4723 188 33 19 chr9 9901521 9901945 -107960682 + L1MB3 LINE L1 5300 5717 -702 193 0 94 0 chr9 9901945 9901977 -107960650 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4723 188 33 19 chr9 9901977 9902670 -107959957 + L1MB3 LINE L1 5717 6419 0 364 312 19 0 chr9 9903238 9903376 -107959251 + MIR3 SINE MIR 63 205 -3 267 179 0 0 chr9 9904325 9904392 -107958235 + CT-rich Low_complexity Low_complexity 2 68 0 315 187 0 112 chr9 9905841 9905975 -107956652 + L1 LINE L1 2889 3007 -3139 2441 175 63 15 chr9 9905990 9906515 -107956112 - L1MA10 LINE L1 -2 6332 5783 1973 262 50 7 chr9 9906513 9907094 -107955533 + L1ME2 LINE L1 5530 6135 -29 * 2094 146 14 97 chr9 9907693 9908178 -107954449 + MER65A LTR ERV1 1 445 0 1776 228 33 4 chr9 9908506 9908958 -107953669 + L1 LINE L1 3959 4423 -1723 388 271 83 31 chr9 9909054 9909246 -107953381 + LTR16B LTR ERVL 263 464 0 21 0 0 0 chr9 9910073 9910094 -107952533 + AT_rich Low_complexity Low_complexity 1 21 0 200 279 73 78 chr9 9910225 9910404 -107952223 + L3b LINE CR1 1234 1411 -172 262 279 82 74 chr9 9910964 9911462 -107951165 + L1ME4a LINE L1 5619 6120 -1 22 35 0 0 chr9 9913068 9913097 -107949530 + AT_rich Low_complexity Low_complexity 1 29 0 2829 154 2 21 chr9 9913313 9913794 -107948833 + LOR1a LTR ERV1 26 497 0 28 29 0 0 chr9 9913825 9913860 -107948767 + AT_rich Low_complexity Low_complexity 1 35 0 262 270 52 17 chr9 9913891 9914006 -107948621 + LTR33A LTR ERVL 1 119 -404 241 281 78 66 chr9 9914169 9914336 -107948291 + LTR33A LTR ERVL 346 514 -9 207 305 0 0 chr9 9914390 9914449 -107948178 + L2 LINE L2 3209 3267 -5 21 0 0 0 chr9 9914798 9914819 -107947808 + AT_rich Low_complexity Low_complexity 1 21 0 27 49 0 0 chr9 9919700 9919741 -107942886 + AT_rich Low_complexity Low_complexity 1 41 0 1958 135 0 0 chr9 9920548 9920858 -107941769 - AluSc SINE Alu 0 318 9 829 269 89 27 chr9 9923016 9923656 -107938971 + L1M4 LINE L1 2749 3428 -2718 564 281 26 6 chr9 9923645 9924044 -107938583 + L1M4 LINE L1 4399 4844 -1302 * 204 154 0 0 chr9 9924296 9924348 -107938279 + (TA)n Simple_repeat Simple_repeat 1 52 0 276 258 314 8 chr9 9924950 9925074 -107937553 + MER5A DNA MER1_type 24 185 -4 2261 105 3 0 chr9 9925906 9926210 -107936417 + AluSp SINE Alu 1 305 -8 25 31 0 0 chr9 9926701 9926733 -107935894 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr9 9927161 9927191 -107935436 + AT_rich Low_complexity Low_complexity 1 30 0 180 0 0 0 chr9 9927476 9927496 -107935131 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 310 283 112 52 chr9 9927623 9927856 -107934771 + L2 LINE L2 1869 2115 -1199 363 256 101 23 chr9 9927916 9928045 -107934582 + MLT1K LTR MaLR 83 221 -367 322 268 41 32 chr9 9928128 9928251 -107934376 + MLT1K LTR MaLR 352 475 -113 226 250 0 54 chr9 9928286 9928342 -107934285 + polypyrimidine Low_complexity Low_complexity 4 56 0 2281 54 7 0 chr9 9928868 9929183 -107933444 - AluY SINE Alu 0 319 3 289 315 20 0 chr9 9929884 9930004 -107932623 - L1ME3 LINE L1 -53 6109 5988 711 281 109 19 chr9 9930087 9930454 -107932173 - L1ME3 LINE L1 -216 5954 5555 27 0 0 0 chr9 9930464 9930491 -107932136 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr9 9930916 9930938 -107931689 + AT_rich Low_complexity Low_complexity 1 22 0 988 322 49 16 chr9 9931966 9932454 -107930173 + L1MEc LINE L1 454 957 -5764 432 315 70 32 chr9 9932525 9932896 -107929731 + L1MEc LINE L1 1521 1905 -4635 * 1088 207 66 68 chr9 9932887 9932957 -107929670 + L1ME1 LINE L1 5022 5091 -1075 2146 110 20 3 chr9 9932957 9933258 -107929369 - AluSg SINE Alu 0 310 5 1088 207 66 68 chr9 9933258 9933849 -107928778 + L1ME1 LINE L1 5091 5678 -488 266 259 9 19 chr9 9933851 9933959 -107928668 + (TA)n Simple_repeat Simple_repeat 2 108 0 2824 175 39 3 chr9 9933984 9934595 -107928032 + L1MA4A LINE L1 2934 3566 -2580 3012 153 26 34 chr9 9934597 9935210 -107927417 + L1MA4A LINE L1 5685 6292 -11 353 222 0 44 chr9 9935227 9935317 -107927310 + L1ME1 LINE L1 5774 5859 -307 1143 203 64 4 chr9 9935583 9935849 -107926778 - L1MB5 LINE L1 -305 5869 5588 204 256 26 0 chr9 9935922 9936000 -107926627 + (TA)n Simple_repeat Simple_repeat 1 80 0 207 284 49 78 chr9 9938923 9939025 -107923602 - L2 LINE L2 -18 3295 3197 209 320 73 87 chr9 9941150 9941356 -107921271 - MIR SINE MIR -7 255 53 23 33 0 0 chr9 9941903 9941933 -107920694 + AT_rich Low_complexity Low_complexity 1 30 0 744 322 107 30 chr9 9942939 9943433 -107919194 - L2 LINE L2 0 3313 2778 275 356 34 0 chr9 9944275 9944393 -107918234 - L2 LINE L2 -2 3311 3190 250 364 28 14 chr9 9944729 9944872 -107917755 - L2 LINE L2 -1855 1459 1315 265 252 39 79 chr9 9944887 9945014 -107917613 + L1ME2 LINE L1 18 139 -6284 320 287 89 63 chr9 9945284 9945521 -107917106 + MLT1H1 LTR MaLR 187 429 -126 659 249 51 68 chr9 9945927 9946321 -107916306 + L1ME2 LINE L1 3825 4211 -2730 * 2302 232 75 48 chr9 9946313 9947404 -107915223 + L1ME2 LINE L1 5738 6854 -105 23 68 0 0 chr9 9947484 9947528 -107915099 + AT_rich Low_complexity Low_complexity 1 44 0 194 0 0 37 chr9 9947722 9947749 -107914878 + (CAAAAA)n Simple_repeat Simple_repeat 3 28 0 291 273 140 13 chr9 9948505 9948655 -107913972 + MARNA DNA Mariner 91 259 -327 28 0 0 0 chr9 9948790 9948818 -107913809 + AT_rich Low_complexity Low_complexity 1 28 0 3235 176 70 16 chr9 9949012 9949656 -107912971 - L1MC1 LINE L1 -13 6320 5642 2102 227 44 70 chr9 9949660 9950387 -107912240 - L1MC1 LINE L1 -1312 4834 4127 202 214 45 135 chr9 9950720 9950809 -107911818 - MIR SINE MIR 0 262 182 1705 167 48 80 chr9 9950960 9951420 -107911207 + MER65A LTR ERV1 1 445 0 368 298 86 20 chr9 9951482 9951633 -107910994 + MIR SINE MIR 96 256 -6 1294 279 57 46 chr9 9951764 9951827 -107910800 + L1ME LINE L1 2041 2102 -4839 252 0 0 0 chr9 9951827 9951855 -107910772 + (CA)n Simple_repeat Simple_repeat 1 28 0 1294 279 57 46 chr9 9951855 9952428 -107910199 + L1ME LINE L1 2102 2667 -4274 1545 112 40 0 chr9 9952428 9952652 -107909975 - AluSg/x SINE Alu -2 308 76 1294 279 57 46 chr9 9952652 9953089 -107909538 + L1ME LINE L1 2667 3491 -3450 855 221 51 72 chr9 9953087 9953572 -107909055 + L1ME LINE L1 5835 6306 -651 * 384 196 88 10 chr9 9953574 9953676 -107908951 + L1ME LINE L1 6389 6498 -461 * 931 255 39 23 chr9 9953672 9953978 -107908649 + L1MC/D LINE L1 4837 5147 -999 1944 164 112 0 chr9 9954000 9954365 -107908262 + MLT2C2 LTR ERVL 10 415 -49 338 156 66 42 chr9 9954420 9954587 -107908040 + (TATATG)n Simple_repeat Simple_repeat 2 172 0 275 133 0 0 chr9 9954595 9954640 -107907987 + MLT2C2 LTR ERVL 459 503 -12 1630 212 66 22 chr9 9954651 9955196 -107907431 + L1MC/D LINE L1 5146 5709 -650 349 239 116 29 chr9 9956082 9956220 -107906407 - MIR SINE MIR -21 241 92 22 56 0 0 chr9 9957067 9957103 -107905524 + AT_rich Low_complexity Low_complexity 1 36 0 345 301 47 31 chr9 9957359 9957552 -107905075 - MIR SINE MIR -10 252 57 2553 127 72 2 chr9 9960022 9960439 -107902188 - Tigger2 DNA MER2_type 0 2718 2273 372 157 29 14 chr9 9960426 9960496 -107902131 - Tigger2 DNA MER2_type -2646 72 2 * 3537 165 46 16 chr9 9961149 9961813 -107900814 + MER4D LTR ERV1 1 684 -219 3188 127 47 61 chr9 9961813 9962436 -107900191 - LTR18B LTR ERVL 0 614 1 3071 191 5 29 chr9 9962637 9963193 -107899434 - HERVL18 LTR ERVL -2556 3491 2949 728 196 23 0 chr9 9963189 9963322 -107899305 - HERVL18 LTR ERVL -2963 3084 2949 * 1191 177 54 6 chr9 9963318 9963596 -107899031 - HERVL18 LTR ERVL -2963 3084 2718 715 160 8 6 chr9 9963593 9963821 -107898806 - HERVL18 LTR ERVL -3595 2452 2119 * 1056 205 22 7 chr9 9963820 9964187 -107898440 - HERVL18 LTR ERVL -4237 1810 1375 1497 205 14 4 chr9 9964386 9964664 -107897963 - HERVL18 LTR ERVL -5760 287 7 2961 132 52 55 chr9 9964676 9965292 -107897335 - LTR18B LTR ERVL 0 614 1 1204 178 9 13 chr9 9965292 9965517 -107897110 + MER4D LTR ERV1 680 903 0 1690 299 92 46 chr9 9965779 9967043 -107895584 + L2 LINE L2 2005 3311 -2 195 312 143 26 chr9 9967955 9968109 -107894518 - MER5A DNA MER1_type 0 189 18 221 359 46 38 chr9 9968174 9968305 -107894322 - MER5B DNA MER1_type -25 153 22 23 0 0 0 chr9 9968464 9968487 -107894140 + AT_rich Low_complexity Low_complexity 1 23 0 307 390 0 8 chr9 9968487 9968605 -107894022 + MER5A DNA MER1_type 73 189 0 261 0 0 0 chr9 9968915 9968944 -107893683 + (T)n Simple_repeat Simple_repeat 1 29 0 180 375 29 39 chr9 9970376 9970480 -107892147 - MIR SINE MIR -140 122 20 21 0 0 0 chr9 9971061 9971082 -107891545 + AT_rich Low_complexity Low_complexity 1 21 0 222 284 27 14 chr9 9971123 9971197 -107891430 - L2 LINE L2 -194 3078 3004 674 324 110 55 chr9 9971669 9972252 -107890375 + MLT1L LTR MaLR 1 615 0 187 373 28 28 chr9 9972254 9972396 -107890231 - MIR3 SINE MIR -6 202 61 265 263 53 13 chr9 9972910 9972986 -107889641 + L2 LINE L2 3189 3267 -5 183 80 0 0 chr9 9974227 9974252 -107888375 + (TTA)n Simple_repeat Simple_repeat 2 26 0 24 103 0 0 chr9 9975786 9975873 -107886754 + AT_rich Low_complexity Low_complexity 1 87 0 305 257 29 48 chr9 9975965 9976171 -107886456 + L1ME3A LINE L1 5009 5210 -936 519 252 0 8 chr9 9976200 9976319 -107886308 + MER63 DNA MER1_type 1 744 -92 230 129 12 71 chr9 9976569 9976654 -107885973 + L1MC4 LINE L1 6624 6703 -1339 269 239 14 0 chr9 9976655 9976726 -107885901 + (TA)n Simple_repeat Simple_repeat 1 72 0 1018 251 103 68 chr9 9976728 9977566 -107885061 + L1ME3A LINE L1 5282 6160 -2 24 32 0 0 chr9 9977605 9977636 -107884991 + AT_rich Low_complexity Low_complexity 1 31 0 22 56 0 0 chr9 9978038 9978074 -107884553 + AT_rich Low_complexity Low_complexity 1 36 0 2281 97 7 3 chr9 9979469 9979827 -107882800 + AluSg SINE Alu 1 359 0 1820 170 6 3 chr9 9981312 9981623 -107881004 + AluJb SINE Alu 1 312 0 2266 118 0 0 chr9 9981796 9982102 -107880525 + AluSx SINE Alu 3 308 -4 27 0 0 0 chr9 9982575 9982602 -107880025 + AT_rich Low_complexity Low_complexity 1 27 0 303 321 290 0 chr9 9982910 9983103 -107879524 - MIR SINE MIR -2 260 12 560 300 58 5 chr9 9983265 9983455 -107879172 - MIR SINE MIR -10 252 53 1235 107 54 29 chr9 9983463 9983668 -107878959 - L1PA10 LINE L1 -4 6164 5955 4700 158 21 37 chr9 9983738 9984569 -107878058 - L1PB4 LINE L1 -5 6151 5334 2177 126 0 0 chr9 9984569 9984879 -107877748 - AluSx SINE Alu -2 310 1 4700 158 21 37 chr9 9984879 9985037 -107877590 - L1PB4 LINE L1 -822 5334 5175 22 0 0 0 chr9 9985200 9985222 -107877405 + AT_rich Low_complexity Low_complexity 1 22 0 212 315 33 33 chr9 9985878 9985970 -107876657 - L2 LINE L2 0 3272 3181 639 309 116 56 chr9 9986144 9986558 -107876069 + MLT1J LTR MaLR 1 439 -72 346 227 13 8 chr9 9986560 9986691 -107875936 + L1MB7 LINE L1 5951 6184 0 285 194 30 45 chr9 9988036 9988103 -107874524 - MER5A DNA MER1_type 0 189 124 253 204 19 0 chr9 9988113 9988167 -107874460 + MER5A DNA MER1_type 55 109 -80 189 0 0 0 chr9 9988390 9988411 -107874216 + (TTA)n Simple_repeat Simple_repeat 2 22 0 315 341 66 57 chr9 9989335 9989701 -107872926 + L2 LINE L2 2132 2500 -814 1777 206 12 38 chr9 9989739 9990210 -107872417 - MER89 LTR ERV1 -2 557 1 220 274 32 16 chr9 9991170 9991232 -107871395 + MIR SINE MIR 48 110 -152 22 56 0 0 chr9 9991241 9991277 -107871350 + AT_rich Low_complexity Low_complexity 1 36 0 456 323 37 1 chr9 9991322 9991495 -107871132 - MIR SINE MIR -44 218 45 430 194 291 15 chr9 9991609 9991743 -107870884 - MER5A DNA MER1_type 0 189 19 2133 163 50 5 chr9 9991743 9992179 -107870448 + L1MA4A LINE L1 5848 6303 0 22 35 0 0 chr9 9993351 9993380 -107869247 + AT_rich Low_complexity Low_complexity 1 29 0 403 213 131 0 chr9 9993696 9993818 -107868809 - MER104 DNA Tc2 -13 167 30 269 346 23 0 chr9 9993874 9994004 -107868623 + L1ME LINE L1 5492 5624 -497 378 333 29 0 chr9 9994295 9994400 -107868227 + L2 LINE L2 3193 3300 -13 24 0 0 0 chr9 9994634 9994658 -107867969 + AT_rich Low_complexity Low_complexity 1 24 0 2213 226 51 36 chr9 9995021 9995631 -107866996 + MLT1E2 LTR MaLR 1 619 -7 1954 145 54 0 chr9 9995706 9996057 -107866570 - L1MA6 LINE L1 0 6300 5931 221 148 0 19 chr9 9996336 9996390 -107866237 + (CAAAA)n Simple_repeat Simple_repeat 3 55 0 2067 153 0 0 chr9 9996797 9997105 -107865522 + AluSx SINE Alu 5 312 0 308 122 23 0 chr9 9997105 9997190 -107865437 + GA-rich Low_complexity Low_complexity 1 86 0 203 0 37 0 chr9 9997222 9997249 -107865378 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 191 122 0 24 chr9 9997381 9997422 -107865205 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 2065 218 14 6 chr9 9998296 9998788 -107863839 - L1PB1 LINE L1 -988 5158 4663 * 3041 100 0 10 chr9 9998785 9999308 -107863319 + L1PB1 LINE L1 5164 5682 -469 442 118 39 33 chr9 9999308 9999461 -107863166 + (TA)n Simple_repeat Simple_repeat 1 154 0 297 51 0 0 chr9 9999492 9999569 -107863058 + (TG)n Simple_repeat Simple_repeat 1 116 0 297 51 0 0 chr9 9999569 9999608 -107863019 + (TG)n Simple_repeat Simple_repeat 2 40 0 2301 132 3 5 chr9 9999614 9999984 -107862643 + L1PB1 LINE L1 5783 6151 0 23 0 0 0 chr9 9999984 10000007 -107862620 + AT_rich Low_complexity Low_complexity 1 23 0 33 0 0 0 chr9 10002505 10002538 -107860089 + AT_rich Low_complexity Low_complexity 1 33 0 220 320 43 38 chr9 10002806 10002922 -107859705 + MIR SINE MIR 1 124 -84 286 344 57 53 chr9 10003188 10003435 -107859192 - MIR SINE MIR 0 262 15 300 274 37 53 chr9 10003512 10003702 -107858925 - L1MEd LINE L1 -4955 1164 978 353 304 85 36 chr9 10003767 10004014 -107858613 + L1M4 LINE L1 4317 4575 -1571 198 71 0 0 chr9 10004429 10004457 -107858170 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 357 24 0 0 chr9 10005142 10005184 -107857443 + (TG)n Simple_repeat Simple_repeat 1 42 0 399 257 91 67 chr9 10005696 10005906 -107856721 - L2 LINE L2 -2 3311 3097 26 0 0 0 chr9 10006386 10006412 -107856215 + AT_rich Low_complexity Low_complexity 1 26 0 245 309 49 0 chr9 10006523 10006604 -107856023 + MIR SINE MIR 118 202 -60 1753 191 15 9 chr9 10007480 10007815 -107854812 + MER1B DNA MER1_type 1 337 0 528 105 42 0 chr9 10007873 10007968 -107854659 - L1PA15 LINE L1 -2 6163 6065 28 0 0 0 chr9 10008011 10008039 -107854588 + AT_rich Low_complexity Low_complexity 1 28 0 224 380 96 0 chr9 10009580 10009746 -107852881 - L2 LINE L2 -527 2787 2606 360 0 0 0 chr9 10010996 10011036 -107851591 + (A)n Simple_repeat Simple_repeat 1 40 0 275 319 69 9 chr9 10011379 10011495 -107851132 - MIR SINE MIR -18 244 122 363 338 58 0 chr9 10012129 10012268 -107850359 + MIR SINE MIR 116 262 0 191 122 0 24 chr9 10013398 10013439 -107849188 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 2066 137 0 0 chr9 10013486 10013792 -107848835 - AluSx SINE Alu -5 307 2 313 287 75 46 chr9 10013932 10014106 -107848521 + MER102a DNA MER1_type 143 321 -9 300 279 68 14 chr9 10014764 10014911 -107847716 - L1ME4a LINE L1 -3 6118 5964 183 163 0 70 chr9 10014947 10014990 -107847637 + L2 LINE L2 3234 3273 -40 404 261 179 31 chr9 10015012 10015269 -107847358 - L1ME4a LINE L1 -170 5951 5657 400 236 250 0 chr9 10016993 10017133 -107845494 - MER5A DNA MER1_type 0 189 15 396 59 0 0 chr9 10017153 10017204 -107845423 + (TA)n Simple_repeat Simple_repeat 1 51 0 306 282 254 7 chr9 10017715 10017857 -107844770 + MER5A DNA MER1_type 13 189 0 258 281 83 10 chr9 10018024 10018120 -107844507 + MIR SINE MIR 151 253 -9 252 217 17 0 chr9 10018126 10018186 -107844441 + (TA)n Simple_repeat Simple_repeat 1 61 0 617 176 111 33 chr9 10018894 10019047 -107843580 + LTR41 LTR ERVL 1 165 -608 272 203 0 17 chr9 10019605 10019664 -107842963 + LTR41 LTR ERVL 710 767 -6 456 297 104 25 chr9 10019754 10019956 -107842671 - MIR SINE MIR -44 218 1 547 220 68 17 chr9 10020193 10020370 -107842257 - MER53 DNA DNA -3 186 1 873 129 14 14 chr9 10020727 10020874 -107841753 + MER41B LTR ERV1 392 538 -97 673 98 20 0 chr9 10020874 10020976 -107841651 - L1P LINE L1 -3327 2819 2716 308 203 9 59 chr9 10020978 10021088 -107841539 + MER41A LTR ERV1 403 474 -12 216 339 57 42 chr9 10021532 10021724 -107840903 - L2 LINE L2 -234 3038 2844 2595 48 0 0 chr9 10021821 10022132 -107840495 + AluY SINE Alu 1 311 0 671 341 165 14 chr9 10022467 10023386 -107839241 - L2 LINE L2 -689 2625 1568 356 226 33 2 chr9 10023462 10024003 -107838624 + (TA)n Simple_repeat Simple_repeat 1 557 0 267 133 0 0 chr9 10024004 10024049 -107838578 + (GA)n Simple_repeat Simple_repeat 1 45 0 183 250 0 0 chr9 10024312 10024348 -107838279 + L2 LINE L2 3191 3226 -87 312 283 43 0 chr9 10027679 10027771 -107834856 + MER5A DNA MER1_type 15 110 -79 210 37 0 0 chr9 10028304 10028331 -107834296 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1955 137 0 18 chr9 10028333 10028618 -107834009 - AluSx SINE Alu -32 280 1 940 277 5 9 chr9 10029923 10030143 -107832484 - MER58A DNA MER1_type 0 224 6 280 311 44 11 chr9 10030351 10030441 -107832186 + L2 LINE L2 3208 3300 -13 186 209 0 0 chr9 10030580 10030623 -107832004 + GA-rich Low_complexity Low_complexity 4 46 0 192 344 109 27 chr9 10030695 10030878 -107831749 - MIR SINE MIR -50 212 15 1909 131 28 3 chr9 10031062 10031344 -107831283 + AluSx SINE Alu 1 289 -23 248 275 100 0 chr9 10031827 10031907 -107830720 - L2 LINE L2 -1 3312 3225 25 75 0 0 chr9 10032863 10032916 -107829711 + AT_rich Low_complexity Low_complexity 1 53 0 2249 93 6 13 chr9 10032922 10033234 -107829393 + AluSg SINE Alu 1 310 0 328 179 12 12 chr9 10033250 10033334 -107829293 + (TA)n Simple_repeat Simple_repeat 2 85 0 23 78 0 0 chr9 10034749 10034800 -107827827 + AT_rich Low_complexity Low_complexity 1 51 0 186 344 33 0 chr9 10034869 10034930 -107827697 + L2 LINE L2 3246 3308 -5 261 299 41 21 chr9 10035092 10035189 -107827438 + MIR SINE MIR 1 99 -163 297 0 0 0 chr9 10035223 10035256 -107827371 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 1989 202 38 44 chr9 10036104 10036609 -107826018 + L1MB7 LINE L1 5667 6168 -16 201 321 46 38 chr9 10036856 10036987 -107825640 - L2 LINE L2 -223 3049 2918 2025 137 0 22 chr9 10037043 10037356 -107825271 + AluSx SINE Alu 1 306 -6 349 304 10 57 chr9 10039728 10039922 -107822705 + L2 LINE L2 2427 2611 -703 233 197 0 33 chr9 10040476 10040537 -107822090 + (CATATA)n Simple_repeat Simple_repeat 6 64 0 255 343 133 20 chr9 10040548 10040796 -107821831 + MLT1L LTR MaLR 220 495 -120 930 222 33 111 chr9 10040798 10041194 -107821433 - MLT1A1 LTR MaLR 0 365 1 6218 234 122 10 chr9 10041195 10042755 -107819872 - MLT1A1-int LTR MaLR -1 1734 1 789 172 126 128 chr9 10042755 10043121 -107819506 - MLT1A1 LTR MaLR 0 365 1 298 298 44 51 chr9 10043214 10043372 -107819255 + L2 LINE L2 3156 3312 -1 211 364 146 12 chr9 10043460 10043625 -107819002 - L3 LINE CR1 -377 1200 1014 743 335 80 29 chr9 10044065 10044588 -107818039 + MLT1K LTR MaLR 37 586 -2 4728 85 15 14 chr9 10045542 10045966 -107816661 + PABL_A LTR ERV1 1 428 -232 4307 10 0 0 chr9 10045966 10046454 -107816173 + L1PA2 LINE L1 5663 6150 -5 4728 85 15 14 chr9 10046454 10046688 -107815939 + PABL_A LTR ERV1 428 660 0 451 310 23 40 chr9 10046774 10046948 -107815679 - MIR SINE MIR -47 215 45 208 344 21 10 chr9 10047114 10047210 -107815417 - MER5A DNA MER1_type -78 111 15 897 180 16 86 chr9 10048608 10048853 -107813774 + LTR1B LTR ERV1 1 228 -598 936 194 150 70 chr9 10048868 10049256 -107813371 + LTR1B LTR ERV1 347 775 -10 421 257 38 0 chr9 10049256 10049361 -107813266 + MIR SINE MIR 83 191 -71 255 61 0 0 chr9 10049478 10049511 -107813116 + (TA)n Simple_repeat Simple_repeat 1 33 0 301 175 0 0 chr9 10049933 10049996 -107812631 - L1MA3 LINE L1 -3 6302 6240 225 263 152 79 chr9 10050208 10050333 -107812294 - L1MEc LINE L1 -4702 1608 1494 474 33 0 0 chr9 10050333 10050393 -107812234 + (TG)n Simple_repeat Simple_repeat 2 61 0 225 263 152 79 chr9 10050393 10050674 -107811953 - L1MEc LINE L1 -4816 1494 1172 1510 141 121 33 chr9 10050683 10050988 -107811639 - MER44D DNA MER2_type -1 608 7 469 325 90 62 chr9 10051041 10051844 -107810783 - L1MEc LINE L1 -5026 1093 269 31 26 0 0 chr9 10053845 10053883 -107808744 + AT_rich Low_complexity Low_complexity 1 38 0 1547 145 92 45 chr9 10054031 10054389 -107808238 + THE1C LTR MaLR 1 375 0 1236 163 54 0 chr9 10054390 10054611 -107808016 - L1P LINE L1 -2283 3863 3631 1417 113 24 0 chr9 10054611 10054821 -107807806 + L1PA13 LINE L1 5945 6161 -2 28 79 0 0 chr9 10054892 10054955 -107807672 + AT_rich Low_complexity Low_complexity 1 63 0 286 297 81 0 chr9 10055025 10055136 -107807491 - MIR SINE MIR -73 189 70 3755 99 13 2 chr9 10055272 10055818 -107806809 - L1PA13 LINE L1 -2 6161 5610 2254 89 6 25 chr9 10055857 10056172 -107806455 - AluY SINE Alu -2 309 1 1947 145 7 3 chr9 10056648 10056944 -107805683 - AluSq SINE Alu -16 297 1 2917 3 0 0 chr9 10057091 10057409 -107805218 + AluYb8 SINE Alu 1 318 0 23 33 0 0 chr9 10057961 10057991 -107804636 + AT_rich Low_complexity Low_complexity 1 30 0 225 281 0 0 chr9 10058440 10058497 -107804130 + L1MD3 LINE L1 6619 6675 -1320 219 103 0 0 chr9 10059023 10059062 -107803565 + (TA)n Simple_repeat Simple_repeat 2 40 0 21 0 0 0 chr9 10059123 10059144 -107803483 + AT_rich Low_complexity Low_complexity 1 21 0 4989 163 32 61 chr9 10059181 10059318 -107803309 + L1MC1 LINE L1 5185 5324 -1009 1960 151 3 0 chr9 10059318 10059602 -107803025 + AluSx SINE Alu 1 285 -27 564 15 0 0 chr9 10059606 10059671 -107802956 + (CAAAC)n Simple_repeat Simple_repeat 2 66 0 4989 163 32 61 chr9 10059671 10059726 -107802901 + L1MC1 LINE L1 5327 5382 -951 1980 139 0 0 chr9 10059726 10060020 -107802607 + AluSx SINE Alu 1 294 -18 4989 163 32 61 chr9 10060020 10060985 -107801642 + L1MC1 LINE L1 5382 6325 -8 254 312 0 26 chr9 10061094 10061171 -107801456 + L2 LINE L2 3239 3313 0 23 68 0 0 chr9 10061211 10061255 -107801372 + AT_rich Low_complexity Low_complexity 1 44 0 2437 105 14 3 chr9 10061280 10061643 -107800984 + L1PA7 LINE L1 5787 6153 -1 242 313 75 75 chr9 10062325 10062552 -107800075 + L2 LINE L2 3074 3300 -13 395 261 244 6 chr9 10062788 10062968 -107799659 - MIR SINE MIR -10 252 30 533 245 126 13 chr9 10063442 10063601 -107799026 + MER5B DNA MER1_type 2 178 0 22 56 0 0 chr9 10064057 10064093 -107798534 + AT_rich Low_complexity Low_complexity 1 36 0 695 271 65 81 chr9 10064194 10064625 -107798002 - L2 LINE L2 -476 2838 2415 23 33 0 0 chr9 10067406 10067436 -107795191 + AT_rich Low_complexity Low_complexity 1 30 0 6484 161 25 4 chr9 10117567 10119620 -107743007 - L1MA2 LINE L1 -139 7584 5489 1292 199 91 23 chr9 10119620 10119971 -107742656 + THE1C LTR MaLR 1 375 0 4211 128 14 10 chr9 10119979 10120687 -107741940 - L1MA2 LINE L1 -4888 2677 1967 4390 198 50 2 chr9 10120790 10121649 -107740978 - L1MA2 LINE L1 -6153 1412 513 2762 203 18 3 chr9 10121650 10122262 -107740365 - L1 LINE L1 -2133 5432 4812 * 4867 235 47 11 chr9 10122253 10124389 -107738238 - L1 LINE L1 -3338 4227 2005 351 333 71 29 chr9 10124979 10125189 -107737438 + MIR SINE MIR 31 249 -13 1285 61 0 0 chr9 10125757 10125920 -107736707 - L1PA5 LINE L1 -3 6151 5989 1269 32 25 0 chr9 10125920 10126077 -107736550 + L1PA5 LINE L1 5805 5965 -189 545 231 50 0 chr9 10127097 10127218 -107735409 + FLAM_A SINE Alu 1 127 -6 312 45 0 0 chr9 10128463 10128507 -107734120 - L1PA3 LINE L1 0 6155 6112 879 45 0 0 chr9 10128507 10128617 -107734010 + L1P2 LINE L1 5630 5739 -415 345 0 0 0 chr9 10129592 10129631 -107732996 + THE1B LTR MaLR 1 39 -325 8216 108 23 32 chr9 10129631 10130893 -107731734 + THE1A-int LTR MaLR 330 1580 0 2235 121 11 11 chr9 10130893 10131248 -107731379 + THE1A LTR MaLR 1 355 0 647 312 51 4 chr9 10132044 10132278 -107730349 - MIR SINE MIR -1 261 17 281 353 49 0 chr9 10132943 10133065 -107729562 + L2 LINE L2 3143 3270 -2 313 288 23 45 chr9 10133107 10133239 -107729388 + L1MEd LINE L1 1163 1291 -5081 242 306 37 30 chr9 10133572 10133706 -107728921 + L1MEd LINE L1 1577 1711 -4673 208 176 39 20 chr9 10133838 10133889 -107728738 + A-rich Low_complexity Low_complexity 1 52 0 344 337 36 29 chr9 10134232 10134508 -107728119 + L1MEd LINE L1 2453 2730 -3652 444 289 99 44 chr9 10134754 10135334 -107727293 + L1MEd LINE L1 2967 3638 -2744 324 302 65 22 chr9 10135535 10135767 -107726860 + L1MEd LINE L1 3899 4140 -2242 2359 32 0 0 chr9 10135828 10136111 -107726516 - L1PA4 LINE L1 -11 6144 5862 7271 36 0 4 chr9 10136804 10138042 -107724585 - L1PA4 LINE L1 -6 6149 4911 9174 38 1 0 chr9 10138042 10139155 -107723472 + L1PA4 LINE L1 3793 4906 -1240 25 0 0 0 chr9 10139617 10139642 -107722985 + AT_rich Low_complexity Low_complexity 1 25 0 180 152 0 0 chr9 10139885 10139918 -107722709 + CT-rich Low_complexity Low_complexity 1 33 0 267 31 0 0 chr9 10141486 10141518 -107721109 + (TG)n Simple_repeat Simple_repeat 1 32 0 250 309 97 24 chr9 10141672 10141837 -107720790 + MIR SINE MIR 86 262 0 206 287 35 9 chr9 10142039 10142154 -107720473 + (TA)n Simple_repeat Simple_repeat 2 119 0 25 31 0 0 chr9 10143387 10143419 -107719208 + AT_rich Low_complexity Low_complexity 1 32 0 202 349 70 104 chr9 10143935 10144176 -107718451 - L2 LINE L2 -5 3267 3035 21 0 0 0 chr9 10144190 10144211 -107718416 + AT_rich Low_complexity Low_complexity 1 21 0 2003 143 0 6 chr9 10144990 10145304 -107717323 + AluSx SINE Alu 1 312 0 518 115 13 0 chr9 10145994 10146072 -107716555 + MSTA LTR MaLR 350 428 0 370 304 152 13 chr9 10146142 10146300 -107716327 + MER5A DNA MER1_type 10 189 0 28 0 0 0 chr9 10146309 10146337 -107716290 + AT_rich Low_complexity Low_complexity 1 28 0 964 220 11 5 chr9 10146605 10146796 -107715831 - AluJb SINE Alu -17 295 104 2002 270 18 18 chr9 10147179 10147724 -107714903 + MLT1H1 LTR MaLR 1 545 -10 32 26 0 0 chr9 10148348 10148387 -107714240 + AT_rich Low_complexity Low_complexity 1 39 0 354 325 102 0 chr9 10148677 10148834 -107713793 + MIR SINE MIR 90 262 0 2063 136 0 3 chr9 10149161 10149456 -107713171 - AluSx SINE Alu -18 294 1 25 0 0 0 chr9 10150824 10150849 -107711778 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr9 10152355 10152378 -107710249 + AT_rich Low_complexity Low_complexity 1 23 0 2426 58 3 0 chr9 10152579 10152873 -107709754 + AluY SINE Alu 1 295 -16 312 304 82 26 chr9 10152882 10153076 -107709551 + L1M4 LINE L1 2379 2583 -3563 363 248 183 30 chr9 10153120 10153350 -107709277 + L1M4 LINE L1 2690 2954 -3192 22 35 0 0 chr9 10154810 10154839 -107707788 + AT_rich Low_complexity Low_complexity 1 29 0 520 273 155 9 chr9 10158829 10159168 -107703459 - L1ME1 LINE L1 -201 5965 5587 429 283 121 36 chr9 10159225 10159864 -107702763 - L1ME1 LINE L1 -687 5479 4787 3028 185 77 65 chr9 10159967 10160614 -107702013 - L1MB7 LINE L1 -24 6160 5522 2064 50 0 0 chr9 10160614 10160874 -107701753 + L1PA4 LINE L1 5894 6153 -2 3028 185 77 65 chr9 10160874 10161050 -107701577 - L1MB7 LINE L1 -662 5522 5307 2143 112 16 10 chr9 10161050 10161354 -107701273 - AluSx SINE Alu -6 306 1 3028 185 77 65 chr9 10161354 10161466 -107701161 - L1MB7 LINE L1 -877 5307 5198 23 33 0 0 chr9 10161628 10161658 -107700969 + AT_rich Low_complexity Low_complexity 1 30 0 211 277 0 0 chr9 10161745 10161792 -107700835 + (CATG)n Simple_repeat Simple_repeat 4 50 0 319 347 96 6 chr9 10161792 10161959 -107700668 - L1ME1 LINE L1 -1992 4154 3973 398 280 146 57 chr9 10162044 10162727 -107699900 - L1ME1 LINE L1 -2713 3433 2690 369 306 58 65 chr9 10162771 10162974 -107699653 - L1ME1 LINE L1 -3563 2583 2381 2294 63 0 20 chr9 10162974 10163276 -107699351 - AluY SINE Alu -15 296 1 369 306 58 65 chr9 10163276 10163347 -107699280 - L1ME1 LINE L1 -3765 2381 2311 5290 90 69 5 chr9 10164063 10164828 -107697799 - L1PA6 LINE L1 -5 6149 5336 479 288 64 63 chr9 10165880 10166109 -107696518 + MIR SINE MIR 14 246 -16 450 0 0 0 chr9 10166338 10166388 -107696239 + (CA)n Simple_repeat Simple_repeat 2 51 0 24 0 0 0 chr9 10167714 10167738 -107694889 + AT_rich Low_complexity Low_complexity 1 24 0 181 327 106 0 chr9 10168335 10168439 -107694188 + L2 LINE L2 3125 3239 -33 2118 126 0 19 chr9 10170146 10170463 -107692164 - AluSq SINE Alu -2 311 1 257 336 19 10 chr9 10173934 10174038 -107688589 + MIR SINE MIR 49 153 -109 1320 213 48 78 chr9 10174056 10174456 -107688171 + MLT1C LTR MaLR 3 390 0 210 260 182 0 chr9 10174456 10174533 -107688094 + MIR SINE MIR 159 249 -13 349 287 85 37 chr9 10174936 10175100 -107687527 - MIR3 SINE MIR -5 203 32 215 372 74 65 chr9 10176437 10176668 -107685959 + L2 LINE L2 2948 3180 -92 259 250 98 11 chr9 10177010 10177102 -107685525 + MIR SINE MIR 58 157 -105 432 337 28 6 chr9 10177572 10177753 -107684874 + MER5A DNA MER1_type 1 185 -4 30 100 0 0 chr9 10178408 10178508 -107684119 + AT_rich Low_complexity Low_complexity 1 100 0 353 312 80 76 chr9 10178991 10179165 -107683462 - MIR SINE MIR -10 252 75 961 161 33 0 chr9 10179165 10179345 -107683282 + L1MB5 LINE L1 5981 6166 -8 353 312 80 76 chr9 10179345 10179420 -107683207 - MIR SINE MIR -187 75 2 2197 119 0 3 chr9 10182162 10182465 -107680162 - AluSg SINE Alu -8 302 1 393 22 0 0 chr9 10183205 10183251 -107679376 + (CA)n Simple_repeat Simple_repeat 1 46 0 4542 193 48 22 chr9 10183288 10184341 -107678286 + L1MD2 LINE L1 5280 6359 0 21 0 0 0 chr9 10184493 10184514 -107678113 + AT_rich Low_complexity Low_complexity 1 21 0 514 164 55 18 chr9 10184527 10184637 -107677990 - MLT1B LTR MaLR -2 388 275 373 176 54 0 chr9 10184856 10184930 -107677697 - MLT1B-int LTR MaLR -488 883 806 * 1736 226 29 13 chr9 10184926 10185306 -107677321 - MLT1B-int LTR MaLR -703 668 283 438 243 36 9 chr9 10185311 10185422 -107677205 - MLT1B-int LTR MaLR -1256 115 2 1147 214 19 62 chr9 10185423 10185745 -107676882 - MLT1B LTR MaLR 0 390 83 370 184 56 56 chr9 10185778 10185903 -107676724 - L1ME4a LINE L1 -30 6091 5967 21 0 0 0 chr9 10186440 10186461 -107676166 + AT_rich Low_complexity Low_complexity 1 21 0 244 376 78 45 chr9 10186534 10186776 -107675851 + L2 LINE L2 2987 3236 -36 283 325 0 12 chr9 10187329 10187409 -107675218 - MIR SINE MIR -155 107 29 2357 71 0 7 chr9 10188255 10188563 -107674064 - AluY SINE Alu -5 306 1 192 352 111 14 chr9 10188565 10188781 -107673846 - L3b LINE CR1 -224 1359 1123 26 0 0 0 chr9 10189380 10189406 -107673221 + AT_rich Low_complexity Low_complexity 1 26 0 395 181 48 0 chr9 10190864 10190947 -107671680 + MIR SINE MIR 174 260 -2 27 29 0 0 chr9 10190968 10191002 -107671625 + AT_rich Low_complexity Low_complexity 1 34 0 201 268 0 0 chr9 10191702 10191758 -107670869 + A-rich Low_complexity Low_complexity 1 56 0 2476 65 0 3 chr9 10191919 10192229 -107670398 - AluY SINE Alu -2 309 1 5397 57 3 0 chr9 10192246 10192918 -107669709 - L1PA7 LINE L1 -33 6121 5448 2153 161 13 15 chr9 10194602 10194993 -107667634 + MLT1B LTR MaLR 1 390 0 598 291 65 57 chr9 10195343 10195694 -107666933 + L1ME4a LINE L1 5500 5853 -268 293 333 56 9 chr9 10197956 10198064 -107664563 + MIR3 SINE MIR 42 154 -54 2348 59 3 41 chr9 10198265 10198585 -107664042 + AluY SINE Alu 1 308 -3 434 367 56 53 chr9 10198726 10199137 -107663490 + L2 LINE L2 2857 3268 -4 288 77 0 0 chr9 10199921 10199960 -107662667 + (CA)n Simple_repeat Simple_repeat 1 39 0 1556 205 3 10 chr9 10200018 10200320 -107662307 + AluJb SINE Alu 1 300 -12 994 354 26 21 chr9 10200644 10201226 -107661401 + L1PA13 LINE L1 1 585 -6202 4333 163 55 66 chr9 10201413 10203001 -107659626 + L1PA16 LINE L1 4588 6157 -9 3026 221 59 14 chr9 10202976 10203946 -107658681 + L1MC3 LINE L1 5254 7764 -21 * 25 51 0 0 chr9 10203955 10203994 -107658633 + AT_rich Low_complexity Low_complexity 1 39 0 2382 71 3 0 chr9 10204412 10204709 -107657918 - AluY SINE Alu -13 298 1 25 0 0 0 chr9 10206438 10206463 -107656164 + AT_rich Low_complexity Low_complexity 1 25 0 191 168 47 19 chr9 10207380 10207487 -107655140 + (TA)n Simple_repeat Simple_repeat 1 110 0 183 129 0 0 chr9 10207486 10207517 -107655110 + (CA)n Simple_repeat Simple_repeat 2 32 0 * 2143 264 68 13 chr9 10207795 10208510 -107654117 + L1MC4a LINE L1 7052 7806 -2 198 156 22 44 chr9 10208776 10208821 -107653806 - L2 LINE L2 -8 3305 3262 428 88 0 0 chr9 10209231 10209288 -107653339 - L1P1 LINE L1 -524 5631 5575 962 43 0 0 chr9 10209288 10209401 -107653226 + L1PA5 LINE L1 6034 6150 -4 25 97 0 9 chr9 10209445 10209482 -107653145 + AT_rich Low_complexity Low_complexity 1 37 -75 1686 147 31 20 chr9 10209482 10209775 -107652852 + AluSg SINE Alu 1 296 -14 25 97 0 9 chr9 10209775 10209850 -107652777 + AT_rich Low_complexity Low_complexity 37 112 0 2017 122 0 7 chr9 10210386 10210705 -107651922 - AluSx SINE Alu 0 312 1 2407 70 0 3 chr9 10210891 10211203 -107651424 + AluY SINE Alu 1 311 0 2396 66 20 0 chr9 10212138 10212443 -107650184 + AluY SINE Alu 1 311 0 191 246 70 18 chr9 10213419 10213476 -107649151 + L2 LINE L2 3254 3313 0 231 233 0 0 chr9 10216084 10216127 -107646500 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 182 381 103 8 chr9 10216612 10216738 -107645889 - L2 LINE L2 -8 3264 3127 285 244 23 0 chr9 10216762 10216848 -107645779 + L1MC4 LINE L1 6615 6702 -1340 345 377 0 0 chr9 10217250 10217388 -107645239 - MIR SINE MIR -56 206 69 265 302 23 54 chr9 10217437 10217566 -107645061 - L2 LINE L2 -592 2722 2598 2649 268 72 23 chr9 10217601 10218499 -107644128 + MER69 DNA AcHobo 1 942 -1584 446 240 126 29 chr9 10218490 10218736 -107643891 + MER69 DNA AcHobo 2156 2425 -101 * 294 347 36 32 chr9 10218960 10219208 -107643419 - L2 LINE L2 -933 2381 2133 556 232 7 7 chr9 10219423 10219561 -107643066 - L1MA10 LINE L1 -4 6330 6193 198 0 0 0 chr9 10219862 10219884 -107642743 + (T)n Simple_repeat Simple_repeat 1 22 0 39 50 0 0 chr9 10219926 10219986 -107642641 + AT_rich Low_complexity Low_complexity 1 60 0 1946 146 0 7 chr9 10220182 10220490 -107642137 + AluSq SINE Alu 1 306 -7 25 0 0 0 chr9 10220759 10220784 -107641843 + AT_rich Low_complexity Low_complexity 1 25 0 1119 240 94 36 chr9 10220808 10221270 -107641357 - MER39 LTR ERV1 0 707 1 24 0 0 0 chr9 10221744 10221768 -107640859 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr9 10222656 10222677 -107639950 + AT_rich Low_complexity Low_complexity 1 21 0 850 188 19 0 chr9 10222805 10222965 -107639662 + FRAM SINE Alu 1 159 -17 195 337 208 0 chr9 10223228 10223329 -107639298 + L2 LINE L2 3151 3272 0 21 0 0 0 chr9 10223656 10223677 -107638950 + AT_rich Low_complexity Low_complexity 1 21 0 341 254 35 70 chr9 10225242 10225356 -107637271 + L2 LINE L2 3200 3309 -4 21 36 0 0 chr9 10226038 10226066 -107636561 + AT_rich Low_complexity Low_complexity 1 28 0 233 204 0 0 chr9 10227191 10227235 -107635392 + L2 LINE L2 3262 3305 -8 26 30 0 0 chr9 10227422 10227455 -107635172 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr9 10227562 10227583 -107635044 + AT_rich Low_complexity Low_complexity 1 21 0 266 272 196 58 chr9 10227712 10227936 -107634691 + MIR SINE MIR 6 260 -2 925 171 48 16 chr9 10228756 10228943 -107633684 + MER50 LTR ERV1 1 193 -541 510 260 73 29 chr9 10229136 10229340 -107633287 + LTR7 LTR ERV1 238 450 0 * 2737 181 39 8 chr9 10229340 10229828 -107632799 + MER50 LTR ERV1 182 685 -49 2901 154 16 8 chr9 10230150 10230657 -107631970 + MER75 DNA T2_type 4 514 0 2429 213 73 63 chr9 10230811 10231404 -107631223 + LTR48 LTR ERV1 1 604 -183 1270 226 3 37 chr9 10231404 10231700 -107630927 - AluJo SINE Alu -26 286 1 2429 213 73 63 chr9 10231700 10231863 -107630764 + LTR48 LTR ERV1 604 764 -23 2195 94 10 0 chr9 10231879 10232177 -107630450 - AluY SINE Alu -9 302 2 353 206 0 0 chr9 10232559 10232622 -107630005 + Tigger2 DNA MER2_type 7 69 -2649 * 1145 160 166 64 chr9 10232611 10232924 -107629703 + Tigger2 DNA MER2_type 2273 2617 -101 * 7598 139 11 99 chr9 10232913 10233578 -107629049 + Tigger1 DNA MER2_type 975 1697 -721 748 181 0 23 chr9 10233578 10233711 -107628916 + AluJo/FLAM SINE Alu 1 130 -172 424 169 0 0 chr9 10233711 10233776 -107628851 + AluSp SINE Alu 134 198 -115 7598 139 11 99 chr9 10233776 10234047 -107628580 + Tigger1 DNA MER2_type 1696 1989 -429 2240 101 0 0 chr9 10234047 10234345 -107628282 + AluY SINE Alu 1 298 -13 7598 139 11 99 chr9 10234345 10234926 -107627701 + Tigger1 DNA MER2_type 1989 2418 0 8423 208 72 41 chr9 10234934 10237419 -107625208 + L1MA9 LINE L1 2125 4684 -1462 1413 142 164 0 chr9 10237423 10237655 -107624972 - AluJb SINE Alu -10 302 33 2332 209 13 20 chr9 10237675 10238220 -107624407 + L1MA9 LINE L1 4682 5222 -924 1431 149 33 78 chr9 10238239 10238574 -107624053 + L1MA9 LINE L1 5865 6184 -128 452 123 14 0 chr9 10238583 10238656 -107623971 - MER41E LTR ERV1 -112 400 327 424 195 16 24 chr9 10238668 10238791 -107623836 + L1MA9 LINE L1 6190 6311 -1 25 99 0 0 chr9 10239107 10239188 -107623439 + AT_rich Low_complexity Low_complexity 1 81 0 24 32 0 0 chr9 10239776 10239807 -107622820 + AT_rich Low_complexity Low_complexity 1 31 0 2163 123 0 0 chr9 10241259 10241559 -107621068 + AluSg SINE Alu 1 300 -10 5119 180 59 6 chr9 10242129 10243908 -107618719 - L1PA16 LINE L1 -6 6160 4280 387 337 76 6 chr9 10244263 10244435 -107618192 - MIR SINE MIR -34 228 45 194 81 27 0 chr9 10244537 10244574 -107618053 + (TA)n Simple_repeat Simple_repeat 2 39 0 2052 133 0 0 chr9 10244751 10245036 -107617591 + AluSc SINE Alu 1 285 -24 360 85 102 0 chr9 10245036 10245154 -107617473 + (TA)n Simple_repeat Simple_repeat 1 130 0 1262 199 86 12 chr9 10245328 10245427 -107617200 + MER46B DNA MER2_type 1 91 -2640 4319 164 20 12 chr9 10245427 10245739 -107616888 + L1MA4 LINE L1 5484 5792 -508 2252 158 62 10 chr9 10245739 10246143 -107616484 - MSTA LTR MaLR -3 425 1 4319 164 20 12 chr9 10246143 10246635 -107615992 + L1MA4 LINE L1 5792 6294 -6 1262 199 86 12 chr9 10246635 10246871 -107615756 + MER46B DNA MER2_type 91 236 0 340 263 79 20 chr9 10247213 10247365 -107615262 + MER113 DNA MER1_type? 276 436 -85 374 301 21 0 chr9 10247526 10247643 -107614984 + MIR SINE MIR 11 130 -78 748 221 17 30 chr9 10247646 10247877 -107614750 - L1MC5 LINE L1 -731 7230 7003 647 197 6 0 chr9 10247928 10248106 -107614521 + GA-rich Low_complexity Low_complexity 2 180 0 572 321 71 64 chr9 10248331 10248913 -107613714 - L1MCa LINE L1 -834 1050 17 230 106 0 85 chr9 10249311 10249342 -107613285 - L1PA4 LINE L1 -1929 4217 4190 9321 42 8 0 chr9 10249342 10251266 -107611361 + L1PA4 LINE L1 4218 6149 -6 230 106 0 85 chr9 10251266 10251281 -107611346 - L1P LINE L1 -1956 4190 4175 187 200 0 0 chr9 10252529 10252564 -107610063 - L2 LINE L2 -4 3268 3234 42 71 0 0 chr9 10252683 10252767 -107609860 + AT_rich Low_complexity Low_complexity 1 84 0 22 70 0 0 chr9 10252790 10252833 -107609794 + AT_rich Low_complexity Low_complexity 1 43 0 386 298 119 70 chr9 10255014 10255444 -107607183 + MLT1L LTR MaLR 1 451 -164 4673 47 6 9 chr9 10255774 10256759 -107605868 - MER11C LTR ERVK 0 1071 1 1050 338 66 33 chr9 10256843 10257511 -107605116 + ERVL LTR ERVL 1949 2638 -3126 1072 350 65 47 chr9 10258073 10259055 -107603572 + ERVL LTR ERVL 3286 4285 -1479 542 268 191 0 chr9 10259197 10259365 -107603262 + MIR SINE MIR 41 240 -22 7494 30 6 5 chr9 10260292 10261714 -107600913 - L1PA3 LINE L1 -3 6152 4730 5080 36 2 0 chr9 10261714 10262330 -107600297 + L1PA3 LINE L1 4131 4747 -1399 1460 154 143 0 chr9 10262548 10262820 -107599807 - AluSx SINE Alu -1 311 1 1445 67 0 0 chr9 10263133 10263313 -107599314 + AluSc SINE Alu 130 309 0 397 324 44 9 chr9 10263815 10264044 -107598583 + MIR SINE MIR 28 262 0 322 346 50 39 chr9 10264079 10264261 -107598366 - MIR3 SINE MIR -6 202 19 216 0 0 0 chr9 10264820 10264844 -107597783 + (T)n Simple_repeat Simple_repeat 1 24 0 803 274 43 10 chr9 10265508 10265716 -107596911 + MER58A DNA MER1_type 1 215 -9 281 294 161 7 chr9 10265952 10266095 -107596532 + MIR SINE MIR 86 250 -12 853 155 37 0 chr9 10266837 10266998 -107595629 + L1MA9 LINE L1 5863 6029 -283 383 121 0 91 chr9 10267554 10267752 -107594875 + (TA)n Simple_repeat Simple_repeat 1 180 0 328 311 192 6 chr9 10270983 10271150 -107591477 - MIR SINE MIR -49 213 16 1436 169 58 38 chr9 10273074 10273418 -107589209 - L1MA8 LINE L1 -4 6287 5937 525 230 109 30 chr9 10273512 10273677 -107588950 + MIR SINE MIR 68 245 -17 885 205 0 0 chr9 10274152 10274303 -107588324 + AluJb SINE Alu 134 284 -28 281 361 71 0 chr9 10275209 10275378 -107587249 - MIR SINE MIR 0 262 82 1218 245 30 18 chr9 10275650 10275985 -107586642 - MER58B DNA MER1_type -1 340 2 2065 119 0 29 chr9 10276061 10276372 -107586255 - AluSc SINE Alu -2 307 6 1427 147 29 21 chr9 10276379 10276658 -107585969 - L1MA6 LINE L1 -2 6298 6018 1378 209 94 115 chr9 10278032 10278967 -107583660 - LTR1B LTR ERV1 -4 1016 1 22 0 0 0 chr9 10280082 10280104 -107582523 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 10280145 10280166 -107582461 + AT_rich Low_complexity Low_complexity 1 21 0 270 285 65 24 chr9 10281197 10281320 -107581307 - MIR3 SINE MIR -5 203 76 246 316 32 11 chr9 10281352 10281447 -107581180 - MIR3 SINE MIR -29 179 83 1584 168 45 45 chr9 10281460 10281834 -107580793 + THE1C LTR MaLR 1 374 -1 333 251 18 105 chr9 10281848 10282019 -107580608 + MER117 DNA MER1_type 41 196 -1 2263 78 3 7 chr9 10283803 10284110 -107578517 - AluSc SINE Alu -3 306 1 330 332 56 39 chr9 10284471 10284703 -107577924 - L1MC/D LINE L1 -2062 5746 5511 229 294 167 49 chr9 10285703 10285948 -107576679 - L2 LINE L2 -676 2638 2365 250 267 35 23 chr9 10286036 10286122 -107576505 + MLT1L LTR MaLR 120 206 -409 2255 101 0 16 chr9 10286544 10286861 -107575766 + AluSx SINE Alu 1 312 0 1672 181 20 0 chr9 10287031 10287330 -107575297 - AluJo SINE Alu -3 309 5 26 64 0 0 chr9 10287419 10287466 -107575161 + AT_rich Low_complexity Low_complexity 1 47 0 2235 159 51 19 chr9 10287750 10288165 -107574462 + MSTC LTR MaLR 1 428 0 21 57 0 0 chr9 10289272 10289307 -107573320 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr9 10290806 10290830 -107571797 + AT_rich Low_complexity Low_complexity 1 24 0 343 348 51 41 chr9 10290982 10291509 -107571118 + HAL1b LINE L1 303 590 -758 620 261 30 53 chr9 10291632 10291896 -107570731 + L1MC5 LINE L1 6976 7233 -728 281 277 61 48 chr9 10292092 10292323 -107570304 + L1MC5 LINE L1 7262 7495 -466 244 311 68 19 chr9 10292597 10292758 -107569869 + L1MC5 LINE L1 7749 7917 -44 397 325 0 26 chr9 10293070 10293298 -107569329 + L1MC4 LINE L1 7693 7914 -128 312 305 16 8 chr9 10294427 10294555 -107568072 - MIR SINE MIR 0 262 134 205 321 0 18 chr9 10294713 10294769 -107567858 + MIR SINE MIR 7 61 -201 281 221 35 122 chr9 10345338 10345417 -107517210 + MER106B DNA MER1_type 903 961 -98 2084 125 3 3 chr9 10345417 10345729 -107516898 + AluSx SINE Alu 1 312 0 281 221 35 122 chr9 10345729 10345821 -107516806 + MER106B DNA MER1_type 961 1059 0 316 264 0 64 chr9 10345829 10345939 -107516688 + L1ME3A LINE L1 5265 5367 -2441 330 354 59 39 chr9 10346008 10346364 -107516263 + L1ME3A LINE L1 5513 5875 -295 2335 69 0 20 chr9 10346445 10346750 -107515877 - AluY SINE Alu -12 299 1 334 248 57 95 chr9 10346872 10347082 -107515545 + L2 LINE L2 3102 3303 -10 339 65 0 0 chr9 10347736 10347782 -107514845 + (TG)n Simple_repeat Simple_repeat 2 47 0 717 166 14 7 chr9 10347809 10347948 -107514679 - L1PB2 LINE L1 0 6151 6012 608 243 143 11 chr9 10347949 10348138 -107514489 - MLT2D LTR ERVL -197 217 4 897 325 122 31 chr9 10348146 10348722 -107513905 - ERVL LTR ERVL -3336 2428 1801 268 332 57 49 chr9 10349380 10349645 -107512982 - ERVL LTR ERVL -4657 1107 841 319 20 20 20 chr9 10349898 10349947 -107512680 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 225 291 0 0 chr9 10350550 10350605 -107512022 + CT-rich Low_complexity Low_complexity 3 57 0 330 257 0 50 chr9 10351957 10352058 -107510569 + MIR SINE MIR 56 151 -111 271 158 463 0 chr9 10353493 10353575 -107509052 + L1MA6 LINE L1 6173 6293 -4 180 191 0 24 chr9 10353844 10353886 -107508741 - L2 LINE L2 -969 2345 2305 419 103 82 0 chr9 10355618 10355715 -107506912 + (CAGAGA)n Simple_repeat Simple_repeat 2 106 0 349 321 83 37 chr9 10357249 10357467 -107505160 + MIR SINE MIR 32 259 -3 233 313 53 30 chr9 10358541 10358672 -107503955 - MIR SINE MIR -114 148 15 464 262 119 12 chr9 10358683 10358851 -107503776 + MIR SINE MIR 5 190 -72 476 319 68 16 chr9 10359070 10359261 -107503366 - MIR SINE MIR -10 252 52 26 0 0 0 chr9 10359929 10359955 -107502672 + AT_rich Low_complexity Low_complexity 1 26 0 25 51 0 0 chr9 10360478 10360517 -107502110 + AT_rich Low_complexity Low_complexity 1 39 0 1968 213 78 23 chr9 10361046 10361520 -107501107 - MLT1D LTR MaLR 0 505 6 2274 103 3 0 chr9 10361737 10362037 -107500590 + AluSp SINE Alu 1 301 -12 2151 115 7 0 chr9 10362164 10362460 -107500167 + AluSq SINE Alu 1 298 -15 1454 247 100 45 chr9 10362840 10363302 -107499325 - HUERS-P2 LTR ERV1 -2530 558 72 1932 208 99 87 chr9 10363403 10364219 -107498408 - LTR1B LTR ERV1 0 826 1 2348 53 4 0 chr9 10365389 10365713 -107496914 - AluY SINE Alu 0 325 1 21 36 0 0 chr9 10366409 10366437 -107496190 + AT_rich Low_complexity Low_complexity 1 28 0 249 389 13 6 chr9 10367071 10367228 -107495399 + L1MC3 LINE L1 558 715 -5404 337 284 27 34 chr9 10367426 10367574 -107495053 + L1MC3 LINE L1 3596 3742 -2387 * 6531 205 62 42 chr9 10367566 10368139 -107494488 + L1MC3 LINE L1 4607 3794 -2335 2176 104 0 3 chr9 10368139 10368428 -107494199 + AluSq SINE Alu 1 288 -25 6531 205 62 42 chr9 10368428 10370054 -107492573 + L1MC3 LINE L1 3793 5386 -743 2464 4 0 7 chr9 10370164 10370441 -107492186 - AluYa5 SINE Alu -36 275 1 7422 32 1 1 chr9 10370509 10371529 -107491098 + L1PA4 LINE L1 5131 6150 -5 185 284 37 62 chr9 10371531 10371612 -107491015 + MIR SINE MIR 152 230 -32 21 0 0 0 chr9 10371702 10371723 -107490904 + AT_rich Low_complexity Low_complexity 1 21 0 1731 105 8 4 chr9 10371889 10372136 -107490491 - AluSc SINE Alu -4 305 58 226 291 115 61 chr9 10372612 10372777 -107489850 + MLT1L LTR MaLR 369 542 -73 201 189 0 0 chr9 10372865 10372902 -107489725 + L2 LINE L2 3272 3308 -5 394 60 0 0 chr9 10372961 10373011 -107489616 - MADE1 DNA Mariner 0 80 31 22 0 0 0 chr9 10373502 10373524 -107489103 + AT_rich Low_complexity Low_complexity 1 22 0 7710 19 0 0 chr9 10375106 10376255 -107486372 - L1PA4 LINE L1 -8 6147 4999 1139 297 15 10 chr9 10376255 10376663 -107485964 - L1 LINE L1 -3335 2811 2402 273 224 90 0 chr9 10377196 10377263 -107485364 + LTR33 LTR ERVL 1 73 -448 291 232 30 71 chr9 10377597 10377696 -107484931 - L3 LINE CR1 -113 1464 1370 3231 228 27 28 chr9 10378102 10378995 -107483632 + L1ME4a LINE L1 530 1421 -5121 2203 102 3 13 chr9 10378998 10379301 -107483326 - AluSp SINE Alu -13 300 1 2127 187 28 37 chr9 10379319 10379778 -107482849 + LTR9B LTR ERV1 7 461 -183 460 50 0 0 chr9 10379781 10379841 -107482786 + L1PA6 LINE L1 6095 6154 0 3270 197 39 43 chr9 10379950 10380670 -107481957 + HUERS-P3 LTR ERV1 6243 6959 -1960 879 143 22 18 chr9 10380688 10380915 -107481712 + HUERS-P3 LTR ERV1 2383 4320 -560 1215 199 3 21 chr9 10381145 10381443 -107481184 + HUERS-P3 LTR ERV1 7176 8918 0 2998 165 63 31 chr9 10381443 10382061 -107480566 + LTR9B LTR ERV1 7 644 0 1664 269 55 68 chr9 10382065 10383183 -107479444 + L1ME4a LINE L1 1422 2688 -4137 195 69 0 0 chr9 10383183 10383212 -107479415 + (TA)n Simple_repeat Simple_repeat 2 30 0 1664 269 55 68 chr9 10383212 10383421 -107479206 + L1ME4a LINE L1 2688 2898 -3927 336 284 101 39 chr9 10384168 10384506 -107478121 + L1ME4a LINE L1 6053 6411 -208 313 364 43 48 chr9 10385129 10385360 -107477267 - L3 LINE CR1 -995 582 353 242 368 69 7 chr9 10385518 10385662 -107476965 - MIR SINE MIR -74 188 36 26 0 0 0 chr9 10386221 10386247 -107476380 + AT_rich Low_complexity Low_complexity 1 26 0 28 79 0 0 chr9 10386883 10386946 -107475681 + AT_rich Low_complexity Low_complexity 1 63 0 366 295 111 53 chr9 10386994 10387238 -107475389 - LTR41 LTR ERVL -6 767 510 407 263 66 7 chr9 10387689 10387826 -107474801 - LTR41 LTR ERVL -588 185 41 23 54 0 0 chr9 10388451 10388488 -107474139 + AT_rich Low_complexity Low_complexity 1 37 0 29 0 0 0 chr9 10388573 10388602 -107474025 + AT_rich Low_complexity Low_complexity 1 29 0 467 280 127 25 chr9 10388883 10389222 -107473405 + L1ME4a LINE L1 5467 5840 -281 280 304 47 12 chr9 10389283 10389454 -107473173 + L1ME4a LINE L1 5944 6120 -1 641 167 80 0 chr9 10389562 10389712 -107472915 + L1MB1 LINE L1 6007 6168 0 1721 124 124 24 chr9 10390089 10390419 -107472208 - THE1B LTR MaLR 0 364 2 28 48 0 0 chr9 10393268 10393310 -107469317 + AT_rich Low_complexity Low_complexity 1 42 0 1905 147 77 18 chr9 10393585 10393925 -107468702 + THE1B LTR MaLR 3 362 -2 11018 94 40 0 chr9 10393927 10395447 -107467180 + THE1B-int LTR MaLR 1 1580 0 1926 130 78 26 chr9 10395448 10395793 -107466834 + THE1B LTR MaLR 2 364 0 263 340 137 26 chr9 10395832 10396211 -107466416 - L2 LINE L2 -826 2488 2068 2534 81 74 15 chr9 10396840 10397212 -107465415 + MLT2A1 LTR ERVL 6 355 -89 387 0 0 0 chr9 10397212 10397255 -107465372 + (TA)n Simple_repeat Simple_repeat 2 44 0 348 24 0 0 chr9 10397254 10397295 -107465332 + (CA)n Simple_repeat Simple_repeat 2 42 0 * 2534 81 74 15 chr9 10397255 10397316 -107465311 + MLT2A1 LTR ERVL 355 422 -22 366 307 92 31 chr9 10397366 10397529 -107465098 + L3 LINE CR1 375 547 -1030 723 161 0 0 chr9 10398056 10398186 -107464441 + L1 LINE L1 4529 4658 -1488 5473 94 47 5 chr9 10398454 10399627 -107463000 - L1PA13 LINE L1 0 6163 4999 25 0 0 0 chr9 10400189 10400214 -107462413 + AT_rich Low_complexity Low_complexity 1 25 0 390 74 0 0 chr9 10400525 10400579 -107462048 + (CA)n Simple_repeat Simple_repeat 1 54 0 2047 97 4 0 chr9 10400612 10400914 -107461713 - AluSc SINE Alu 0 315 13 1466 196 3 25 chr9 10400916 10401201 -107461426 - AluJb SINE Alu -11 301 23 1822 182 100 5 chr9 10401239 10401618 -107461009 + MSTA LTR MaLR 2 416 -12 304 344 114 31 chr9 10402026 10402378 -107460249 + L2 LINE L2 1869 2249 -1065 582 291 98 0 chr9 10402494 10402697 -107459930 - MIR SINE MIR 0 262 40 216 252 54 117 chr9 10403647 10403758 -107458869 + MIR3 SINE MIR 74 177 -31 262 370 68 25 chr9 10406995 10407157 -107455470 + MIR3 SINE MIR 19 187 -21 455 335 24 0 chr9 10408610 10408774 -107453853 - MIR SINE MIR -46 216 49 23 0 0 0 chr9 10409271 10409294 -107453333 + AT_rich Low_complexity Low_complexity 1 23 0 266 298 19 39 chr9 10411227 10411331 -107451296 + MIR SINE MIR 48 149 -113 357 62 0 0 chr9 10411342 10411390 -107451237 + (TG)n Simple_repeat Simple_repeat 1 48 0 276 333 67 22 chr9 10411783 10411918 -107450709 + MIR SINE MIR 79 219 -43 248 271 0 0 chr9 10413218 10413277 -107449350 - MIR3 SINE MIR -12 196 138 335 77 0 19 chr9 10413429 10413481 -107449146 + (GAAA)n Simple_repeat Simple_repeat 2 52 0 21 36 0 0 chr9 10413742 10413770 -107448857 + AT_rich Low_complexity Low_complexity 1 28 0 342 323 90 18 chr9 10413969 10414136 -107448491 + L2 LINE L2 3130 3308 -5 2266 97 3 6 chr9 10414308 10414619 -107448008 + AluSg SINE Alu 1 310 0 1999 33 0 0 chr9 10415482 10415724 -107446903 - L1PA4 LINE L1 -3 6152 5911 1354 170 5 0 chr9 10415975 10416198 -107446429 - AluJb SINE Alu -13 299 76 401 252 191 62 chr9 10416534 10416744 -107445883 - MIR SINE MIR -6 256 20 22 35 0 0 chr9 10416960 10416989 -107445638 + AT_rich Low_complexity Low_complexity 1 29 0 1908 145 7 0 chr9 10417798 10418087 -107444540 - AluSx SINE Alu -20 292 2 1908 200 130 19 chr9 10418439 10418859 -107443768 + MER67D LTR ERV1 3 480 -34 1434 214 26 45 chr9 10418859 10419012 -107443615 + MLT1A2 LTR MaLR 4 158 -216 204 40 0 0 chr9 10419012 10419037 -107443590 + (GAAA)n Simple_repeat Simple_repeat 2 26 0 1434 214 26 45 chr9 10419037 10419261 -107443366 + MLT1A2 LTR MaLR 158 374 0 1908 200 130 19 chr9 10419261 10419301 -107443326 + MER67D LTR ERV1 480 514 0 644 325 42 17 chr9 10419371 10419611 -107443016 - MIR SINE MIR -4 258 13 249 174 61 0 chr9 10419828 10419926 -107442701 + (TA)n Simple_repeat Simple_repeat 1 104 0 2094 133 0 0 chr9 10420070 10420364 -107442263 + AluSg SINE Alu 1 294 -16 231 385 56 7 chr9 10421052 10421195 -107441432 + MIR3 SINE MIR 3 152 -56 358 264 62 0 chr9 10421300 10421444 -107441183 - LTR33A LTR ERVL -2 521 369 1939 121 10 3 chr9 10421604 10421901 -107440726 + AluSg SINE Alu 12 310 0 1457 188 84 10 chr9 10422225 10422581 -107440046 + LTR56 LTR ERV1 86 467 0 23 0 0 0 chr9 10423018 10423041 -107439586 + AT_rich Low_complexity Low_complexity 1 23 0 26 30 0 0 chr9 10423791 10423824 -107438803 + AT_rich Low_complexity Low_complexity 1 33 0 1216 92 8 8 chr9 10424806 10425055 -107437572 + (TTTC)n Simple_repeat Simple_repeat 1 249 0 849 221 16 21 chr9 10425871 10426061 -107436566 + MER5A DNA MER1_type 1 189 0 688 215 116 45 chr9 10426073 10426352 -107436275 - LTR37A LTR ERV1 0 426 121 2044 142 0 3 chr9 10426352 10426663 -107435964 + AluSq SINE Alu 1 310 -3 688 215 116 45 chr9 10426663 10426694 -107435933 - LTR37A LTR ERV1 -305 121 94 180 380 28 19 chr9 10427488 10427596 -107435031 + MIR SINE MIR 42 150 -58 194 0 0 37 chr9 10427858 10427885 -107434742 + (CAAAAA)n Simple_repeat Simple_repeat 2 27 0 525 198 0 19 chr9 10428743 10428849 -107433778 + L1PA16 LINE L1 6054 6157 -9 21 0 0 0 chr9 10428849 10428870 -107433757 + AT_rich Low_complexity Low_complexity 1 21 0 477 0 0 0 chr9 10429171 10429224 -107433403 + (GAAA)n Simple_repeat Simple_repeat 4 56 0 27 0 0 0 chr9 10430444 10430471 -107432156 + AT_rich Low_complexity Low_complexity 1 27 0 186 259 19 0 chr9 10431469 10431523 -107431104 - MIR SINE MIR -104 158 104 390 228 96 101 chr9 10431569 10431788 -107430839 - MIR SINE MIR -42 220 3 828 223 88 0 chr9 10431831 10432024 -107430603 + MER63A DNA MER1_type 1 210 0 184 298 20 126 chr9 10432196 10432347 -107430280 + MIR3 SINE MIR 10 144 -64 23 68 0 0 chr9 10433878 10433922 -107428705 + AT_rich Low_complexity Low_complexity 1 44 0 180 329 14 0 chr9 10434015 10434088 -107428539 - MER5A DNA MER1_type -45 144 71 2393 246 35 35 chr9 10434913 10435778 -107426849 + L1MC3 LINE L1 4246 5110 -1036 24 53 0 0 chr9 10435938 10435976 -107426651 + AT_rich Low_complexity Low_complexity 1 38 0 607 220 181 6 chr9 10436031 10436325 -107426302 + L1MC3 LINE L1 5125 5487 -838 180 0 0 0 chr9 10436325 10436345 -107426282 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 607 220 181 6 chr9 10436345 10436378 -107426249 + L1MC3 LINE L1 5487 5513 -812 646 160 0 0 chr9 10436378 10436478 -107426149 - LTR12 LTR ERV1 0 714 615 300 273 10 0 chr9 10436480 10436579 -107426048 - LTR30 LTR ERV1 -79 643 544 687 155 38 113 chr9 10436579 10436792 -107425835 - LTR12 LTR ERV1 -437 277 81 1802 183 158 7 chr9 10436792 10437240 -107425387 + L1MC3 LINE L1 5564 6079 -1706 949 192 20 15 chr9 10437246 10437444 -107425183 + L1MC3 LINE L1 6169 6367 -1418 620 189 45 0 chr9 10437443 10437575 -107425052 + L1MC3 LINE L1 7481 7618 -167 * 37 62 0 0 chr9 10439484 10439549 -107423078 + AT_rich Low_complexity Low_complexity 1 65 0 422 235 10 10 chr9 10439578 10439676 -107422951 + L2 LINE L2 3216 3313 0 242 351 45 22 chr9 10441370 10441504 -107421123 + MER5A DNA MER1_type 7 143 -46 2230 118 21 3 chr9 10441526 10441866 -107420761 - L1PA15 LINE L1 -6 6159 5814 469 283 135 80 chr9 10442222 10442260 -107420367 - L3 LINE CR1 -3 1574 1540 2111 127 0 16 chr9 10442260 10442575 -107420052 + AluSg SINE Alu 1 310 0 469 283 135 80 chr9 10442575 10442988 -107419639 - L3 LINE CR1 -37 1540 1098 1500 203 58 29 chr9 10445385 10445742 -107416885 + MLT1A1 LTR MaLR 6 428 0 435 19 0 0 chr9 10446842 10446894 -107415733 + (CA)n Simple_repeat Simple_repeat 2 53 0 1403 185 129 16 chr9 10447687 10447990 -107414637 - MER1B DNA MER1_type 0 337 1 248 314 26 103 chr9 10447999 10448155 -107414472 + MIR SINE MIR 48 191 -71 553 312 83 5 chr9 10448658 10448863 -107413764 - MER58A DNA MER1_type -2 222 2 185 156 0 22 chr9 10449698 10449743 -107412884 + (CA)n Simple_repeat Simple_repeat 1 44 0 245 363 41 29 chr9 10452682 10452853 -107409774 + MIR SINE MIR 86 258 -4 399 196 83 43 chr9 10452854 10452991 -107409636 + L1MB7 LINE L1 6018 6137 -43 1021 233 16 12 chr9 10452991 10453269 -107409358 + AluJo SINE Alu 38 316 0 395 214 111 8 chr9 10454740 10454866 -107407761 + MER104 DNA Tc2 5 143 -37 369 0 0 0 chr9 10454949 10454990 -107407637 + (CA)n Simple_repeat Simple_repeat 2 42 0 4999 187 26 7 chr9 10456590 10458148 -107404479 + L1PA16 LINE L1 4591 6175 0 21 0 0 0 chr9 10458233 10458254 -107404373 + AT_rich Low_complexity Low_complexity 1 21 0 252 86 0 0 chr9 10458550 10458585 -107404042 + (T)n Simple_repeat Simple_repeat 1 35 0 11431 34 2 0 chr9 10460394 10461903 -107400724 - L1PA4 LINE L1 -624 5531 4018 5286 38 0 0 chr9 10461903 10462556 -107400071 + L1PA4 LINE L1 5519 6175 0 220 312 97 32 chr9 10462773 10462866 -107399761 - MIR SINE MIR -111 151 53 684 251 25 25 chr9 10463200 10463399 -107399228 + MIR SINE MIR 2 200 -62 281 189 19 0 chr9 10463400 10463453 -107399174 + L1PA16 LINE L1 5858 5911 -255 227 250 22 22 chr9 10463961 10464053 -107398574 - MER103 DNA DNA -63 103 12 422 293 183 11 chr9 10464252 10464443 -107398184 - MIR SINE MIR -20 242 19 316 346 63 0 chr9 10464730 10464889 -107397738 - MIR SINE MIR 0 262 94 26 0 0 0 chr9 10465030 10465056 -107397571 + AT_rich Low_complexity Low_complexity 1 26 0 26 64 0 0 chr9 10466559 10466606 -107396021 + AT_rich Low_complexity Low_complexity 1 47 0 29 0 0 0 chr9 10467403 10467432 -107395195 + AT_rich Low_complexity Low_complexity 1 29 0 2981 117 6 26 chr9 10467888 10468386 -107394241 + L1MB3 LINE L1 5696 6183 0 275 326 11 21 chr9 10469524 10469619 -107393008 + MIR3 SINE MIR 101 194 -14 319 192 164 14 chr9 10469914 10469987 -107392640 - MLT1I LTR MaLR -245 164 81 216 0 0 0 chr9 10470043 10470067 -107392560 + (A)n Simple_repeat Simple_repeat 1 24 0 435 311 90 6 chr9 10471511 10471688 -107390939 + MIR SINE MIR 65 256 -6 229 309 82 0 chr9 10471671 10471781 -107390846 + L2 LINE L2 3187 3305 -8 * 253 313 20 27 chr9 10471967 10472117 -107390510 + MLT1I LTR MaLR 1 149 -260 1864 171 13 19 chr9 10472212 10472587 -107390040 - L1MA8 LINE L1 -3 6288 5916 1717 155 19 7 chr9 10472588 10472897 -107389730 + L1MA8 LINE L1 5588 5900 -391 223 347 96 30 chr9 10474252 10474419 -107388208 - MIR SINE MIR -15 247 70 238 328 67 22 chr9 10475052 10475186 -107387441 + MIR SINE MIR 63 202 -60 2806 13 0 0 chr9 10475256 10475567 -107387060 - AluYa5 SINE Alu 0 311 1 529 275 28 3 chr9 10477234 10477445 -107385182 - MIR SINE MIR -37 225 9 306 289 52 39 chr9 10477550 10477721 -107384906 + MER5A DNA MER1_type 4 187 -2 408 241 15 3 chr9 10477754 10477889 -107384738 - MER5A DNA MER1_type 0 189 10 283 289 87 71 chr9 10477952 10478119 -107384508 - MER5A DNA MER1_type -11 167 12 189 132 0 0 chr9 10478501 10478539 -107384088 + (TC)n Simple_repeat Simple_repeat 2 39 0 257 244 12 0 chr9 10478569 10478655 -107383972 + (TA)n Simple_repeat Simple_repeat 1 87 0 829 226 122 19 chr9 10480391 10480710 -107381917 + Charlie4a DNA MER1_type 119 508 0 653 282 235 19 chr9 10480714 10481212 -107381415 + L2 LINE L2 2703 3313 0 1092 226 147 48 chr9 10481384 10481800 -107380827 - MLT1C LTR MaLR 0 467 11 342 0 0 0 chr9 10482226 10482264 -107380363 + (TCTA)n Simple_repeat Simple_repeat 1 38 0 254 229 31 0 chr9 10482280 10482376 -107380251 + (TA)n Simple_repeat Simple_repeat 1 99 0 204 371 9 26 chr9 10482433 10482549 -107380078 + MIR SINE MIR 149 262 0 671 334 127 30 chr9 10482571 10482897 -107379730 + L3 LINE CR1 810 1103 -474 306 0 0 0 chr9 10482897 10482931 -107379696 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 671 334 127 30 chr9 10482931 10483179 -107379448 + L3 LINE CR1 1103 1440 -137 197 293 130 32 chr9 10483188 10483311 -107379316 - MIR SINE MIR -4 258 124 1235 191 62 57 chr9 10483539 10483962 -107378665 - LTR37A LTR ERV1 0 426 2 407 273 22 14 chr9 10484347 10484486 -107378141 - MIR SINE MIR -50 212 73 26 74 0 0 chr9 10484681 10484735 -107377892 + AT_rich Low_complexity Low_complexity 1 54 0 25 65 0 0 chr9 10484997 10485043 -107377584 + AT_rich Low_complexity Low_complexity 1 46 0 2200 110 0 0 chr9 10486055 10486345 -107376282 + AluSx SINE Alu 1 290 -22 2139 92 16 13 chr9 10489417 10489652 -107372975 - AluSg SINE Alu 0 310 123 315 0 0 0 chr9 10489652 10489687 -107372940 + (TG)n Simple_repeat Simple_repeat 2 36 0 2139 92 16 13 chr9 10489687 10489807 -107372820 - AluSg SINE Alu -187 123 5 333 0 0 0 chr9 10490456 10490493 -107372134 + (CA)n Simple_repeat Simple_repeat 2 38 0 1116 258 82 55 chr9 10490705 10491252 -107371375 + MER68 LTR ERV1 1 562 0 2436 172 29 2 chr9 10492223 10492676 -107369951 + MLT1C LTR MaLR 1 465 -2 24 0 0 0 chr9 10492886 10492910 -107369717 + AT_rich Low_complexity Low_complexity 1 24 0 180 338 56 28 chr9 10493370 10493583 -107369044 + L2 LINE L2 1880 2098 -1216 21 36 0 0 chr9 10493840 10493868 -107368759 + AT_rich Low_complexity Low_complexity 1 28 0 210 340 111 14 chr9 10495332 10495476 -107367151 + MIR SINE MIR 105 262 0 898 247 85 62 chr9 10496853 10497164 -107365463 + MLT1F LTR MaLR 3 328 -239 4534 268 13 22 chr9 10498448 10500587 -107362040 + L1PA16 LINE L1 2182 4249 -3335 7994 11 0 0 chr9 10500587 10501744 -107360883 + L1HS LINE L1 4999 6155 0 8408 213 26 28 chr9 10501750 10502446 -107360181 + L1PA16 LINE L1 4252 4948 -2656 230 0 33 0 chr9 10502446 10502476 -107360151 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 8408 213 26 28 chr9 10502476 10504359 -107358268 + L1PA16 LINE L1 4948 6823 -781 17718 31 1 0 chr9 10504359 10507317 -107355310 + L1PA3 LINE L1 3220 6155 0 8408 213 26 28 chr9 10507317 10508092 -107354535 + L1PA16 LINE L1 6823 7598 -6 23 33 0 0 chr9 10508127 10508157 -107354470 + AT_rich Low_complexity Low_complexity 1 30 0 270 293 0 57 chr9 10508255 10508361 -107354266 + MLT1F1 LTR MaLR 1 100 -467 22 0 0 0 chr9 10508361 10508383 -107354244 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr9 10509075 10509099 -107353528 + AT_rich Low_complexity Low_complexity 1 24 0 260 171 0 0 chr9 10509311 10509352 -107353275 - MER8 DNA MER2_type -2 237 197 * 2325 156 10 5 chr9 10509348 10509732 -107352895 + Tigger2 DNA MER2_type 2328 2713 -5 195 42 0 0 chr9 10510180 10510204 -107352423 + (TA)n Simple_repeat Simple_repeat 2 25 0 364 129 0 24 chr9 10510220 10510305 -107352322 + (CATA)n Simple_repeat Simple_repeat 2 84 0 465 256 51 51 chr9 10510306 10510482 -107352145 - L2 LINE L2 -4 3309 3134 676 45 0 0 chr9 10511294 10511383 -107351244 - L1PA2 LINE L1 -1 6154 6066 767 11 0 0 chr9 10511383 10511470 -107351157 + L1P1 LINE L1 5650 5736 -419 2043 133 3 0 chr9 10511627 10511921 -107350706 + AluSq SINE Alu 1 295 -18 276 290 130 23 chr9 10512342 10512473 -107350154 - L2 LINE L2 -2 3311 3167 703 241 24 0 chr9 10512708 10512874 -107349753 + MER5B DNA MER1_type 8 177 -1 191 418 11 0 chr9 10513630 10513721 -107348906 + MIR SINE MIR 7 98 -164 2258 112 0 0 chr9 10513753 10514058 -107348569 - AluSg SINE Alu -5 305 1 22 0 0 0 chr9 10514064 10514086 -107348541 + AT_rich Low_complexity Low_complexity 1 22 0 358 314 44 25 chr9 10514105 10514264 -107348363 + L1ME LINE L1 5611 5772 -349 3205 81 5 0 chr9 10514264 10514698 -107347929 + L1PA5 LINE L1 5716 6151 -3 200 135 0 96 chr9 10514701 10514753 -107347874 + (A)n Simple_repeat Simple_repeat 1 47 0 1287 120 0 6 chr9 10515089 10515272 -107347355 - AluSc SINE Alu -11 298 117 2333 83 3 3 chr9 10515286 10515586 -107347041 - AluSg SINE Alu -6 304 5 1891 237 147 20 chr9 10515601 10516518 -107346109 - L1ME1 LINE L1 0 6166 5170 333 140 0 0 chr9 10516515 10516572 -107346055 + L1MA7 LINE L1 5773 5829 -483 * 2188 80 7 0 chr9 10516573 10516849 -107345778 + AluSp SINE Alu 1 278 -35 2365 150 32 13 chr9 10516865 10517332 -107345295 + L1MA7 LINE L1 5815 6290 -1 392 250 100 5 chr9 10517339 10517539 -107345088 - L1ME1 LINE L1 -954 5192 4974 14380 197 92 11 chr9 10517579 10520104 -107342523 - L1PA13 LINE L1 -14 6791 4474 417 20 0 0 chr9 10520104 10520154 -107342473 + (TG)n Simple_repeat Simple_repeat 1 50 0 14380 197 92 11 chr9 10520154 10522033 -107340594 - L1PA13 LINE L1 -2331 4474 2750 207 0 0 0 chr9 10522033 10522056 -107340571 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1766 147 4 7 chr9 10522058 10522337 -107340290 - AluSg SINE Alu -32 278 1 14380 197 92 11 chr9 10522337 10522397 -107340230 - L1PA13 LINE L1 -4055 2750 1874 357 328 8 0 chr9 10522398 10522523 -107340104 - L1ME1 LINE L1 -2299 3847 3722 * 3553 236 9 9 chr9 10522518 10523255 -107339372 + L1MA4 LINE L1 6 742 -4586 242 100 40 0 chr9 10523255 10523305 -107339322 + L1MA4 LINE L1 707 758 -4570 2388 186 52 14 chr9 10523392 10524043 -107338584 + L1MA4 LINE L1 732 1398 -4065 888 216 0 10 chr9 10524041 10524245 -107338382 + L1MA4 LINE L1 2340 2541 -3787 * 1190 177 33 4 chr9 10524237 10524480 -107338147 + L1MA4 LINE L1 3524 3773 -2555 6544 193 25 10 chr9 10524485 10526630 -107335997 + L1MA4 LINE L1 4049 6231 -251 279 215 0 0 chr9 10526631 10526696 -107335931 + (TA)n Simple_repeat Simple_repeat 1 65 0 225 143 0 0 chr9 10526696 10526738 -107335889 - LTR66 LTR ERVL -171 439 398 384 103 0 0 chr9 10526739 10526797 -107335830 + (CATATA)n Simple_repeat Simple_repeat 3 60 0 226 173 19 0 chr9 10527007 10527059 -107335568 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 23 0 0 0 chr9 10527132 10527155 -107335472 + AT_rich Low_complexity Low_complexity 1 23 0 208 278 37 0 chr9 10529912 10530020 -107332607 + (TA)n Simple_repeat Simple_repeat 2 113 0 231 206 40 8 chr9 10530033 10530159 -107332468 + (TA)n Simple_repeat Simple_repeat 1 130 0 2575 36 0 0 chr9 10533222 10533523 -107329104 + AluY SINE Alu 1 301 -10 593 274 43 43 chr9 10533809 10534043 -107328584 + L1M4b LINE L1 1348 1581 -5278 2259 72 14 0 chr9 10534439 10534730 -107327897 + AluY SINE Alu 1 295 -16 226 247 14 55 chr9 10535016 10535089 -107327538 + L2 LINE L2 3235 3304 -9 1558 140 73 62 chr9 10535231 10535550 -107327077 + THE1B LTR MaLR 1 326 -38 2357 70 3 0 chr9 10535550 10535852 -107326775 - AluY SINE Alu -8 303 1 1558 140 73 62 chr9 10535852 10535890 -107326737 + THE1B LTR MaLR 326 362 -2 27 49 0 0 chr9 10536415 10536456 -107326171 + AT_rich Low_complexity Low_complexity 1 41 0 303 282 39 19 chr9 10537367 10537470 -107325157 - MIR SINE MIR -102 160 56 2001 180 64 10 chr9 10538183 10538588 -107324039 + MSTB1 LTR MaLR 1 427 -5 264 323 91 38 chr9 10539212 10539398 -107323229 + MIR SINE MIR 67 262 0 22 0 0 0 chr9 10540265 10540287 -107322340 + AT_rich Low_complexity Low_complexity 1 22 0 370 370 36 51 chr9 10541347 10541736 -107320891 - L2 LINE L2 -436 2878 2496 1005 184 53 0 chr9 10542705 10542911 -107319716 - MER20 DNA MER1_type 0 219 3 340 374 63 35 chr9 10543130 10543448 -107319179 + HAL1 LINE L1 1444 1770 -737 514 282 159 9 chr9 10543631 10543851 -107318776 - MIR SINE MIR -1 261 9 409 250 32 32 chr9 10544331 10544455 -107318172 + L2 LINE L2 2765 2888 -426 729 294 68 39 chr9 10544499 10545192 -107317435 + L1 LINE L1 3529 4241 -1905 388 310 73 67 chr9 10545243 10545692 -107316935 + L1 LINE L1 4326 4777 -1369 261 231 96 29 chr9 10545762 10545866 -107316761 + L1 LINE L1 4904 5014 -1132 234 0 0 0 chr9 10545972 10545998 -107316629 + (A)n Simple_repeat Simple_repeat 1 26 0 2036 133 3 19 chr9 10546003 10546319 -107316308 + AluY SINE Alu 1 311 0 254 222 12 37 chr9 10546512 10546593 -107316034 - MIR SINE MIR -1 261 183 338 324 58 24 chr9 10546628 10546920 -107315707 + L1ME LINE L1 5366 5667 -497 247 268 74 121 chr9 10546952 10547183 -107315444 + MIR SINE MIR 26 245 -17 1903 136 7 0 chr9 10548172 10548484 -107314143 + AluSx SINE Alu 1 314 0 304 220 17 0 chr9 10548545 10548604 -107314023 + L2 LINE L2 3201 3260 -12 184 344 0 0 chr9 10548822 10548886 -107313741 + MIR SINE MIR 178 241 -21 24 0 0 0 chr9 10549100 10549124 -107313503 + AT_rich Low_complexity Low_complexity 1 24 0 541 308 85 27 chr9 10549465 10549689 -107312938 - MIR SINE MIR -6 256 20 338 87 0 0 chr9 10551491 10551537 -107311090 + LTR42 LTR ERVL 363 408 -87 208 351 88 40 chr9 10551810 10551958 -107310669 + L2 LINE L2 2585 2739 -575 22 0 0 0 chr9 10552357 10552379 -107310248 + AT_rich Low_complexity Low_complexity 1 22 0 287 260 144 0 chr9 10552858 10552962 -107309665 - MLT1H LTR MaLR 0 549 431 305 258 21 32 chr9 10553018 10553111 -107309516 + LTR42 LTR ERVL 1 92 -403 1149 176 10 10 chr9 10553120 10553325 -107309302 + LTR42 LTR ERVL 291 495 0 580 287 111 42 chr9 10553346 10553635 -107308992 - MLT1H LTR MaLR -228 321 13 183 363 72 85 chr9 10553649 10554037 -107308590 - L2 LINE L2 -78 3194 2812 1886 103 18 70 chr9 10554114 10554443 -107308184 + AluSx SINE Alu 1 312 0 2252 123 0 0 chr9 10554465 10554773 -107307854 + AluSq SINE Alu 1 308 -5 207 0 0 0 chr9 10555094 10555117 -107307510 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr9 10555248 10555269 -107307358 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr9 10555307 10555342 -107307285 + AT_rich Low_complexity Low_complexity 1 35 0 715 203 14 7 chr9 10556324 10556472 -107306155 - MLT1D LTR MaLR 0 505 357 225 0 0 0 chr9 10556475 10556500 -107306127 + (A)n Simple_repeat Simple_repeat 1 25 0 271 391 96 10 chr9 10556901 10557098 -107305529 - L3b LINE CR1 -69 1514 1301 22 0 0 0 chr9 10557886 10557908 -107304719 + AT_rich Low_complexity Low_complexity 1 22 0 261 0 0 0 chr9 10558347 10558376 -107304251 + (TA)n Simple_repeat Simple_repeat 1 29 0 * 486 0 0 0 chr9 10558375 10558429 -107304198 + (GA)n Simple_repeat Simple_repeat 2 55 0 206 276 35 0 chr9 10558499 10558557 -107304070 - MIR SINE MIR -123 139 80 206 289 82 41 chr9 10558805 10558902 -107303725 - MIR SINE MIR -1 261 161 1333 107 39 73 chr9 10558971 10559204 -107303423 - AluSq SINE Alu -13 300 76 292 233 0 0 chr9 10559271 10559331 -107303296 + MIR SINE MIR 103 162 -100 570 246 59 21 chr9 10559337 10559524 -107303103 + MLT1J LTR MaLR 7 200 -311 1079 236 52 35 chr9 10559812 10560180 -107302447 + L1ME1 LINE L1 5769 6142 -24 311 275 28 18 chr9 10560332 10560441 -107302186 + MIR SINE MIR 147 256 -6 1246 256 28 19 chr9 10560766 10561126 -107301501 + MLT1A1 LTR MaLR 1 363 -2 320 332 22 74 chr9 10563556 10563785 -107298842 - MIR SINE MIR -19 243 27 267 31 0 0 chr9 10563933 10563965 -107298662 + (CA)n Simple_repeat Simple_repeat 1 32 0 904 209 33 33 chr9 10564325 10564540 -107298087 + MER20 DNA MER1_type 1 215 -4 226 42 0 167 chr9 10565562 10565610 -107297017 - L1M2 LINE L1 -491 5821 5782 345 195 11 11 chr9 10565626 10565713 -107296914 - L1M2 LINE L1 -507 5793 5707 631 175 0 0 chr9 10565713 10565829 -107296798 + L1MA7 LINE L1 6170 6289 -2 225 239 65 33 chr9 10565883 10565975 -107296652 + L1ME4a LINE L1 5992 6086 -35 775 328 82 29 chr9 10565977 10566468 -107296159 + L3 LINE CR1 1052 1568 -9 261 57 0 0 chr9 10566694 10566729 -107295898 + (TA)n Simple_repeat Simple_repeat 1 35 0 831 192 15 56 chr9 10566846 10567044 -107295583 + MLT1A1 LTR MaLR 165 354 -11 21 0 0 0 chr9 10567199 10567220 -107295407 + AT_rich Low_complexity Low_complexity 1 21 0 201 158 0 26 chr9 10567281 10567319 -107295308 + MIR SINE MIR 219 255 -7 215 347 48 9 chr9 10567421 10567570 -107295057 + MER5A DNA MER1_type 1 164 -25 435 38 0 0 chr9 10569397 10569450 -107293177 + (TTTTA)n Simple_repeat Simple_repeat 2 54 0 1833 149 7 3 chr9 10569452 10569734 -107292893 - AluSx SINE Alu -29 283 1 22 88 0 0 chr9 10569783 10569840 -107292787 + AT_rich Low_complexity Low_complexity 1 57 0 384 384 83 35 chr9 10569902 10570300 -107292327 - L2 LINE L2 -1 3271 2855 240 328 71 74 chr9 10570626 10570937 -107291690 - L2 LINE L2 -880 2434 2125 671 262 52 98 chr9 10571005 10571372 -107291255 - L1ME2 LINE L1 0 6164 5815 628 225 0 48 chr9 10571369 10571556 -107291071 - L1M4 LINE L1 -2413 3733 3556 * 26 0 0 0 chr9 10571748 10571774 -107290853 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr9 10571896 10571924 -107290703 + AT_rich Low_complexity Low_complexity 1 28 0 2374 41 0 0 chr9 10572262 10572555 -107290072 + AluY SINE Alu 1 293 -18 291 191 0 0 chr9 10574663 10574731 -107287896 + (TA)n Simple_repeat Simple_repeat 1 68 0 212 169 51 0 chr9 10574752 10574811 -107287816 + (TA)n Simple_repeat Simple_repeat 1 62 0 318 106 0 0 chr9 10574826 10574873 -107287754 + (TA)n Simple_repeat Simple_repeat 2 48 0 1813 196 3 0 chr9 10575643 10575979 -107286648 + L1PB4 LINE L1 5808 6144 -12 284 267 145 23 chr9 10577394 10577525 -107285102 + MLT1J2 LTR MaLR 132 278 -172 208 0 0 0 chr9 10578298 10578321 -107284306 + (TTTG)n Simple_repeat Simple_repeat 2 104 0 1491 169 46 42 chr9 10578321 10578605 -107284022 - AluSq SINE Alu -28 285 1 686 314 59 26 chr9 10579367 10579828 -107282799 + L1ME LINE L1 5321 5796 -374 23 86 0 0 chr9 10579841 10579899 -107282728 + AT_rich Low_complexity Low_complexity 1 58 0 350 235 51 0 chr9 10579928 10580026 -107282601 + MER20 DNA MER1_type 113 215 -4 697 210 126 29 chr9 10580071 10580309 -107282318 + MER96B DNA MER1_type? 156 416 -1 210 174 0 22 chr9 10581309 10581355 -107281272 + (CA)n Simple_repeat Simple_repeat 2 46 0 243 299 97 8 chr9 10581518 10581652 -107280975 - MER117 DNA MER1_type -51 146 1 27 49 0 0 chr9 10582400 10582441 -107280186 + AT_rich Low_complexity Low_complexity 1 41 0 404 233 47 40 chr9 10582718 10582868 -107279759 + HAL1b LINE L1 1196 1346 -2 33 25 0 0 chr9 10583661 10583701 -107278926 + AT_rich Low_complexity Low_complexity 1 40 0 29 60 0 0 chr9 10583998 10584048 -107278579 + AT_rich Low_complexity Low_complexity 1 50 0 405 260 89 45 chr9 10584275 10584521 -107278106 - MIR SINE MIR -3 259 3 30 0 0 0 chr9 10584620 10584650 -107277977 + AT_rich Low_complexity Low_complexity 1 30 0 194 114 0 23 chr9 10584956 10585000 -107277627 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 229 313 0 0 chr9 10585291 10585358 -107277269 + (CA)n Simple_repeat Simple_repeat 1 67 0 22 0 0 0 chr9 10585546 10585568 -107277059 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr9 10586185 10586214 -107276413 + AT_rich Low_complexity Low_complexity 1 29 0 197 233 0 17 chr9 10587206 10587266 -107275361 + CT-rich Low_complexity Low_complexity 3 61 0 1652 177 3 21 chr9 10587412 10587744 -107274883 + AluSx SINE Alu 1 327 0 549 64 13 0 chr9 10588392 10588470 -107274157 - L1PA2 LINE L1 -3 6152 6074 2511 150 7 25 chr9 10588686 10589125 -107273502 + Tigger2a DNA MER2_type 4 434 0 22 0 0 0 chr9 10589171 10589193 -107273434 + AT_rich Low_complexity Low_complexity 1 22 0 26 88 0 0 chr9 10589213 10589281 -107273346 + AT_rich Low_complexity Low_complexity 1 68 0 212 191 60 71 chr9 10589944 10590028 -107272599 - MIR SINE MIR 0 262 180 1142 315 77 55 chr9 10590126 10590722 -107271905 - MER45C DNA AcHobo -343 610 2 180 111 0 0 chr9 10591736 10591763 -107270864 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 317 199 43 21 chr9 10592738 10592879 -107269748 + (TA)n Simple_repeat Simple_repeat 2 145 0 6541 42 0 0 chr9 10593096 10593892 -107268735 + L1PA4 LINE L1 5357 6152 -3 890 250 15 10 chr9 10594164 10594368 -107268259 + MLT1C LTR MaLR 263 467 0 851 70 8 0 chr9 10594421 10594549 -107268078 + (TCTA)n Simple_repeat Simple_repeat 3 131 0 201 171 49 0 chr9 10595557 10595598 -107267029 + G-rich Low_complexity Low_complexity 3 45 0 365 253 0 23 chr9 10595626 10595713 -107266914 + L2 LINE L2 3186 3270 -2 1797 177 39 52 chr9 10595778 10595986 -107266641 + MSTB2 LTR MaLR 1 210 -247 306 0 0 0 chr9 10595986 10596020 -107266607 + (GA)n Simple_repeat Simple_repeat 2 35 0 * 351 0 0 0 chr9 10596019 10596058 -107266569 + (TG)n Simple_repeat Simple_repeat 1 39 0 1797 177 39 52 chr9 10596020 10596312 -107266315 + MSTB2 LTR MaLR 210 457 0 1504 103 0 5 chr9 10598016 10598219 -107264408 + AluSx SINE Alu 17 218 -94 47 0 0 0 chr9 10598230 10598277 -107264350 + AT_rich Low_complexity Low_complexity 1 47 0 1696 178 28 0 chr9 10600956 10601277 -107261350 + L1MC1 LINE L1 5986 6315 -18 2538 147 43 9 chr9 10602162 10602603 -107260024 + MER65C LTR ERV1 1 456 -5 1259 258 101 75 chr9 10602874 10603635 -107258992 + MER20B DNA MER1_type 3 783 0 2361 184 93 77 chr9 10603798 10604419 -107258208 + MER39 LTR ERV1 75 705 -2 273 173 0 0 chr9 10604564 10604616 -107258011 + L1ME1 LINE L1 3680 3731 -2415 2980 253 49 35 chr9 10604750 10605891 -107256736 + L1ME1 LINE L1 5007 6161 -5 227 300 29 0 chr9 10606528 10606598 -107256029 - L2 LINE L2 -5 3267 3196 257 167 19 0 chr9 10606933 10606987 -107255640 + GA-rich Low_complexity Low_complexity 1 55 0 425 299 147 5 chr9 10607924 10608128 -107254499 + MIR SINE MIR 28 260 -2 283 378 45 0 chr9 10608313 10608424 -107254203 + L2 LINE L2 3145 3260 -12 184 296 56 0 chr9 10609487 10609541 -107253086 - L2 LINE L2 -4 3268 3212 204 250 0 0 chr9 10609660 10609708 -107252919 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 1787 149 4 0 chr9 10610271 10610572 -107252055 - AluSq SINE Alu 0 302 1 1007 136 13 0 chr9 10610794 10610949 -107251678 + AluSp SINE Alu 152 308 -5 31 26 0 0 chr9 10610949 10610987 -107251640 + AT_rich Low_complexity Low_complexity 1 38 0 2107 141 45 17 chr9 10611875 10612229 -107250398 + THE1B LTR MaLR 1 364 0 186 71 0 0 chr9 10612541 10612569 -107250058 + (A)n Simple_repeat Simple_repeat 1 28 0 24 0 0 0 chr9 10613910 10613934 -107248693 + AT_rich Low_complexity Low_complexity 1 24 0 280 223 43 0 chr9 10614810 10614929 -107247698 + (TA)n Simple_repeat Simple_repeat 1 124 0 268 267 91 61 chr9 10615233 10615398 -107247229 - MIR SINE MIR -30 232 63 21 0 0 0 chr9 10615429 10615450 -107247177 + AT_rich Low_complexity Low_complexity 1 21 0 342 276 80 75 chr9 10615488 10615687 -107246940 + MIR SINE MIR 63 262 0 769 265 87 107 chr9 10615728 10615808 -107246819 + MLT1G1 LTR MaLR 6 86 -509 1760 141 87 14 chr9 10615808 10616163 -107246464 + L1MA7 LINE L1 5911 6291 0 769 265 87 107 chr9 10616163 10616520 -107246107 + MLT1G1 LTR MaLR 86 434 -161 21 57 0 0 chr9 10616599 10616634 -107245993 + AT_rich Low_complexity Low_complexity 1 35 0 264 219 31 0 chr9 10616634 10616698 -107245929 + MLT1G1 LTR MaLR 522 587 -8 2161 118 3 0 chr9 10616816 10617112 -107245515 - AluSx SINE Alu -15 297 1 5047 130 60 24 chr9 10619209 10619905 -107242722 - Tigger3b DNA MER2_type -1799 1229 490 1907 151 6 62 chr9 10619905 10620262 -107242365 + MER1B DNA MER1_type 1 337 0 5047 130 60 24 chr9 10620262 10620487 -107242140 - Tigger3b DNA MER2_type -2538 490 275 554 194 10 0 chr9 10620489 10620587 -107242040 - Tigger3b DNA MER2_type -1132 99 1 250 310 22 92 chr9 10620771 10620955 -107241672 + L2 LINE L2 2868 3038 -234 186 310 220 20 chr9 10621066 10621166 -107241461 + L2 LINE L2 3137 3256 -16 189 107 0 0 chr9 10622773 10622801 -107239826 + (TC)n Simple_repeat Simple_repeat 1 28 0 22 35 0 0 chr9 10622865 10622894 -107239733 + AT_rich Low_complexity Low_complexity 1 29 0 2458 61 0 6 chr9 10623040 10623353 -107239274 - AluY SINE Alu 0 311 1 322 244 56 0 chr9 10624115 10624205 -107238422 - MER53 DNA DNA -93 96 2 309 281 22 0 chr9 10625009 10625098 -107237529 + L1MC4 LINE L1 6614 6704 -1338 198 103 0 0 chr9 10625098 10625127 -107237500 + (TA)n Simple_repeat Simple_repeat 1 29 0 26 30 0 0 chr9 10626197 10626230 -107236397 + AT_rich Low_complexity Low_complexity 1 33 0 407 330 91 17 chr9 10626329 10626559 -107236068 - MIR SINE MIR -12 250 4 425 353 8 0 chr9 10626622 10626755 -107235872 + MIR SINE MIR 16 149 -59 2128 119 42 33 chr9 10626855 10627216 -107235411 + THE1B LTR MaLR 1 364 0 10214 103 33 40 chr9 10627216 10628806 -107233821 + THE1B-int LTR MaLR 1 1580 0 2062 134 42 28 chr9 10628806 10629165 -107233462 + THE1B LTR MaLR 1 364 0 396 299 75 86 chr9 10629175 10629544 -107233083 + MLT1H LTR MaLR 137 501 -48 1140 175 0 0 chr9 10629544 10629727 -107232900 - MER58A DNA MER1_type 0 224 42 285 207 0 0 chr9 10629793 10629851 -107232776 + MLT1H LTR MaLR 491 548 -1 255 274 0 0 chr9 10630127 10630189 -107232438 + (CA)n Simple_repeat Simple_repeat 1 62 0 21 36 0 0 chr9 10630343 10630371 -107232256 + AT_rich Low_complexity Low_complexity 1 28 0 2173 106 3 10 chr9 10630938 10631250 -107231377 + AluSg SINE Alu 1 310 0 243 228 63 13 chr9 10631641 10631720 -107230907 + L1ME LINE L1 5541 5623 -498 1234 194 38 69 chr9 10632028 10632316 -107230311 + AluJo SINE Alu 1 279 -33 345 47 0 0 chr9 10632323 10632366 -107230261 + (TAA)n Simple_repeat Simple_repeat 2 44 0 755 178 82 0 chr9 10632940 10633086 -107229541 - MER20 DNA MER1_type -61 158 1 224 224 0 0 chr9 10633399 10633448 -107229179 + (TATG)n Simple_repeat Simple_repeat 4 52 0 21 71 0 0 chr9 10634241 10634283 -107228344 + AT_rich Low_complexity Low_complexity 1 42 0 22 35 0 0 chr9 10634864 10634893 -107227734 + AT_rich Low_complexity Low_complexity 1 29 0 1187 172 84 56 chr9 10634904 10635154 -107227473 - AluJo SINE Alu -55 257 1 33 66 0 0 chr9 10635224 10635285 -107227342 + AT_rich Low_complexity Low_complexity 1 61 0 2237 117 0 0 chr9 10635563 10635871 -107226756 - AluSx SINE Alu -4 308 1 21 0 0 0 chr9 10685913 10685934 -107176693 + AT_rich Low_complexity Low_complexity 1 21 0 2191 193 62 32 chr9 10685981 10686514 -107176113 - L1MB8 LINE L1 -5 6173 5625 318 325 9 18 chr9 10688072 10688186 -107174441 + MIR3 SINE MIR 91 203 -5 247 258 76 106 chr9 10689105 10689237 -107173390 + MER91B DNA MER1_type 2 129 -61 244 269 97 43 chr9 10689262 10689355 -107173272 + MER91B DNA MER1_type 91 188 -2 203 86 0 29 chr9 10689450 10689485 -107173142 + (GA)n Simple_repeat Simple_repeat 1 34 0 221 121 0 48 chr9 10691211 10691294 -107171333 + (CAAAAA)n Simple_repeat Simple_repeat 3 81 0 465 293 104 4 chr9 10691436 10691632 -107170995 + MIR SINE MIR 48 257 -5 2136 77 13 7 chr9 10691911 10692211 -107170416 + AluY SINE Alu 1 302 -9 228 35 0 0 chr9 10692797 10692826 -107169801 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2219 71 0 0 chr9 10692828 10693108 -107169519 - AluY SINE Alu -31 280 1 289 204 65 75 chr9 10693655 10693748 -107168879 - L2 LINE L2 -1 3312 3221 21 36 0 0 chr9 10694079 10694107 -107168520 + AT_rich Low_complexity Low_complexity 1 28 0 270 0 0 0 chr9 10694395 10694425 -107168202 + (CA)n Simple_repeat Simple_repeat 1 30 0 677 217 76 60 chr9 10694538 10694649 -107167978 - MER5A DNA MER1_type -2 187 70 1453 183 7 47 chr9 10694649 10694950 -107167677 - AluJo SINE Alu -23 289 1 677 217 76 60 chr9 10694950 10695022 -107167605 - MER5A DNA MER1_type -119 70 1 22 0 0 0 chr9 10696014 10696036 -107166591 + AT_rich Low_complexity Low_complexity 1 22 0 426 234 236 1 chr9 10696143 10696322 -107166305 + MIR SINE MIR 20 232 -30 212 231 96 0 chr9 10696301 10696353 -107166274 + L2 LINE L2 3216 3272 0 * 287 315 102 9 chr9 10696433 10696541 -107166086 + MIR3 SINE MIR 89 206 -2 474 287 102 0 chr9 10696640 10696797 -107165830 - MER5B DNA MER1_type -2 176 4 228 35 0 0 chr9 10697160 10697189 -107165438 + (CA)n Simple_repeat Simple_repeat 2 30 0 27 29 0 0 chr9 10697200 10697234 -107165393 + AT_rich Low_complexity Low_complexity 1 34 0 349 314 73 0 chr9 10697370 10697494 -107165133 + L2 LINE L2 3180 3312 -1 304 273 0 34 chr9 10697509 10697597 -107165030 - L1ME LINE L1 -682 5439 5355 241 325 62 19 chr9 10697962 10698122 -107164505 + MIR3 SINE MIR 33 199 -9 258 132 75 0 chr9 10698220 10698273 -107164354 + Alu SINE Alu 246 302 0 1135 186 81 39 chr9 10698549 10698893 -107163734 - MLT1E3 LTR MaLR -5 619 231 392 266 47 90 chr9 10699541 10699640 -107162987 + MIR SINE MIR 25 127 -135 2381 63 7 0 chr9 10699640 10699942 -107162685 - AluY SINE Alu -7 304 1 392 266 47 90 chr9 10699942 10700075 -107162552 + MIR SINE MIR 127 247 -15 251 218 18 0 chr9 10700077 10700132 -107162495 + (TATG)n Simple_repeat Simple_repeat 2 57 0 1110 198 0 5 chr9 10700277 10700469 -107162158 + AluJb SINE Alu 85 275 -37 39 22 0 0 chr9 10700476 10700522 -107162105 + AT_rich Low_complexity Low_complexity 1 46 0 1875 146 0 10 chr9 10700625 10700933 -107161694 - AluSg SINE Alu -5 305 1 211 111 28 0 chr9 10702189 10702225 -107160402 + G-rich Low_complexity Low_complexity 1 37 0 186 143 0 0 chr9 10703058 10703093 -107159534 + (T)n Simple_repeat Simple_repeat 1 35 0 321 310 115 48 chr9 10705080 10705336 -107157291 + MLT1L LTR MaLR 175 457 -158 1618 204 25 67 chr9 10705336 10705860 -107156767 + MLT1D LTR MaLR 1 502 -3 321 310 115 48 chr9 10705860 10705916 -107156711 + MLT1L LTR MaLR 457 508 -107 669 272 217 19 chr9 10706206 10706519 -107156108 + L2 LINE L2 2428 2802 -512 250 260 71 97 chr9 10706525 10706679 -107155948 + MLT1I LTR MaLR 242 391 -18 284 272 54 33 chr9 10708639 10708731 -107153896 - MIR3 SINE MIR -2 206 113 1117 223 42 28 chr9 10709647 10709934 -107152693 + MLT1E2 LTR MaLR 1 291 -335 1812 182 91 41 chr9 10710275 10710714 -107151913 + LOR1b LTR ERV1 1 461 0 215 31 31 0 chr9 10711138 10711170 -107151457 + (TA)n Simple_repeat Simple_repeat 2 34 0 651 47 12 0 chr9 10711170 10711256 -107151371 - L1PA5 LINE L1 -9 6145 6059 22 0 0 0 chr9 10711273 10711295 -107151332 + AT_rich Low_complexity Low_complexity 1 22 0 23 68 0 0 chr9 10711312 10711356 -107151271 + AT_rich Low_complexity Low_complexity 1 44 0 226 188 21 0 chr9 10712707 10712755 -107149872 + (TA)n Simple_repeat Simple_repeat 1 49 0 22 0 0 0 chr9 10712785 10712807 -107149820 + AT_rich Low_complexity Low_complexity 1 22 0 317 287 40 33 chr9 10712981 10713131 -107149496 + MIR SINE MIR 110 260 -2 21 82 0 0 chr9 10713166 10713215 -107149412 + AT_rich Low_complexity Low_complexity 1 49 0 213 429 15 0 chr9 10713405 10713538 -107149089 + MIR3 SINE MIR 33 167 -41 261 122 0 41 chr9 10714253 10714302 -107148325 + L1PA7 LINE L1 5 51 -6410 * 31052 108 6 23 chr9 10714284 10720463 -107142164 + L1PA7 LINE L1 292 6461 -8 5451 173 33 18 chr9 10720967 10722845 -107139782 - L1MA4A LINE L1 -5 6298 4392 702 318 40 16 chr9 10722828 10723149 -107139478 - L1MC/D LINE L1 -1985 5823 5495 * 1945 142 0 40 chr9 10723375 10723698 -107138929 - AluSx SINE Alu -1 311 2 228 367 11 57 chr9 10725420 10725571 -107137056 + MIR SINE MIR 33 176 -62 286 255 92 41 chr9 10725599 10725697 -107136930 - L2 LINE L2 -3 3310 3208 189 0 0 0 chr9 10727432 10727453 -107135174 + (CA)n Simple_repeat Simple_repeat 2 22 0 243 377 83 30 chr9 10728114 10728644 -107133983 - L2 LINE L2 -527 2787 2230 340 273 23 0 chr9 10730141 10730229 -107132398 - L1MC4 LINE L1 -1339 6703 6614 23 0 0 0 chr9 10730981 10731004 -107131623 + AT_rich Low_complexity Low_complexity 1 23 0 400 259 47 59 chr9 10731567 10731737 -107130890 - Charlie8 DNA MER1_type -2188 229 62 827 204 11 11 chr9 10732642 10732823 -107129804 - AluJb SINE Alu -9 303 123 216 250 0 0 chr9 10733025 10733069 -107129558 + CT-rich Low_complexity Low_complexity 4 47 0 1758 180 13 0 chr9 10734759 10735059 -107127568 - AluJb SINE Alu -8 304 1 192 386 0 39 chr9 10735315 10735442 -107127185 - L2 LINE L2 -255 3058 2937 1112 217 91 0 chr9 10737175 10737234 -107125393 - AluJo SINE Alu 0 349 297 792 96 0 0 chr9 10737234 10737349 -107125278 + (TCCCC)n Simple_repeat Simple_repeat 2 116 0 1112 217 91 0 chr9 10737349 10737497 -107125130 - AluJo SINE Alu -52 297 109 180 77 0 0 chr9 10737497 10737523 -107125104 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1112 217 91 0 chr9 10737523 10737605 -107125022 - AluJo SINE Alu -240 109 36 279 184 13 79 chr9 10738560 10738636 -107123991 + 7SK RNA RNA 16 86 -107 434 282 160 0 chr9 10739163 10739319 -107123308 - MER5A DNA MER1_type -1 188 8 24 32 0 0 chr9 10740097 10740128 -107122499 + AT_rich Low_complexity Low_complexity 1 31 0 24 77 0 0 chr9 10740630 10740682 -107121945 + AT_rich Low_complexity Low_complexity 1 52 0 303 154 0 144 chr9 10741119 10741223 -107121404 + L1MC4 LINE L1 6615 6703 -1339 22 0 0 0 chr9 10741632 10741654 -107120973 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 10743378 10743399 -107119228 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr9 10743433 10743456 -107119171 + AT_rich Low_complexity Low_complexity 1 23 0 1435 306 50 28 chr9 10744606 10745244 -107117383 + MLT2F LTR ERVL 11 628 0 375 251 89 10 chr9 10745422 10745565 -107117062 + MLT1G LTR MaLR 413 585 -10 195 292 67 22 chr9 10746411 10746500 -107116127 - MIR SINE MIR -58 204 112 629 325 0 0 chr9 10746680 10746837 -107115790 - MIR SINE MIR -100 162 6 424 297 21 68 chr9 10746939 10747131 -107115496 + L2 LINE L2 3131 3313 0 4598 218 17 34 chr9 10748305 10750200 -107112427 + L1MC/D LINE L1 3860 5718 -615 378 198 79 20 chr9 10750411 10750512 -107112115 - MLT1J2 LTR MaLR -239 211 105 386 183 29 0 chr9 10750550 10750654 -107111973 + L1M4 LINE L1 3869 3975 -2171 522 341 78 15 chr9 10751724 10751929 -107110698 - MIR SINE MIR -44 218 1 26 0 0 0 chr9 10751993 10752019 -107110608 + AT_rich Low_complexity Low_complexity 1 26 0 258 371 53 7 chr9 10754582 10754733 -107107894 + MIR SINE MIR 61 218 -44 367 262 28 28 chr9 10754973 10755080 -107107547 + MIR3 SINE MIR 54 160 -48 199 276 69 0 chr9 10755721 10755779 -107106848 + MIR SINE MIR 92 153 -109 196 345 76 25 chr9 10756802 10756921 -107105706 + L2 LINE L2 3147 3271 -1 7617 52 5 48 chr9 10757016 10758877 -107103750 - L1PA6 LINE L1 -4 6150 4337 201 317 17 100 chr9 10759059 10759179 -107103448 + L2 LINE L2 3182 3291 -22 30 59 0 0 chr9 10759195 10759246 -107103381 + AT_rich Low_complexity Low_complexity 1 51 0 5527 66 19 4 chr9 10759308 10760049 -107102578 - L1PA7 LINE L1 0 6154 5403 889 213 48 54 chr9 10761329 10761438 -107101189 - L1MA4 LINE L1 -6 6294 6186 2323 105 3 0 chr9 10761438 10761744 -107100883 - AluSp SINE Alu -6 307 1 889 213 48 54 chr9 10761744 10761810 -107100817 - L1MA4 LINE L1 -114 6186 6121 1933 130 3 3 chr9 10761810 10762103 -107100524 + AluSx SINE Alu 1 293 -19 889 213 48 54 chr9 10762103 10762240 -107100387 - L1MA4 LINE L1 -179 6121 5983 240 246 29 0 chr9 10762495 10762564 -107100063 - MER117 DNA MER1_type -51 146 76 1834 136 5 87 chr9 10762769 10763158 -107099469 + MER4A LTR ERV1 1 357 -307 447 176 119 31 chr9 10763212 10763371 -107099256 + MER4C LTR ERV1 293 465 0 31 44 0 0 chr9 10763717 10763762 -107098865 + AT_rich Low_complexity Low_complexity 1 45 0 280 254 0 0 chr9 10763768 10763831 -107098796 + MLT1D LTR MaLR 3 65 -440 1127 117 6 6 chr9 10763832 10763995 -107098632 - AluSx SINE Alu -149 163 1 21 71 0 0 chr9 10764469 10764511 -107098116 + AT_rich Low_complexity Low_complexity 1 42 0 532 287 67 15 chr9 10764511 10764706 -107097921 - MIR SINE MIR -17 245 41 270 308 114 35 chr9 10764804 10765093 -107097534 - L2 LINE L2 0 3313 3002 312 284 7 61 chr9 10768566 10768714 -107093913 - L1MEd LINE L1 -5968 151 12 2331 91 3 0 chr9 10769505 10769812 -107092815 - AluSp SINE Alu -5 308 1 2137 117 3 3 chr9 10770708 10771015 -107091612 - AluSx SINE Alu -5 307 1 524 298 98 9 chr9 10771412 10771627 -107091000 + MIR SINE MIR 23 256 -6 432 132 0 0 chr9 10771688 10771756 -107090871 - MER41A LTR ERV1 -86 468 401 257 177 152 0 chr9 10772139 10772218 -107090409 + L1MA4A LINE L1 6208 6298 -5 263 289 44 31 chr9 10773304 10773463 -107089164 - HAL1 LINE L1 -5 2502 2342 203 393 8 25 chr9 10774202 10774324 -107088303 + MIR3 SINE MIR 37 156 -52 1317 249 83 18 chr9 10774654 10774855 -107087772 - Charlie1b DNA MER1_type -2238 523 337 2416 58 7 0 chr9 10774855 10775163 -107087464 + AluY SINE Alu 1 310 -1 1317 249 83 18 chr9 10775163 10775452 -107087175 - Charlie1b DNA MER1_type -2424 337 1 383 313 6 3 chr9 10776275 10776443 -107086184 - MIR SINE MIR -11 251 33 2192 89 0 0 chr9 10776634 10776941 -107085686 + AluSg SINE Alu 1 307 0 352 314 0 0 chr9 10776941 10777027 -107085600 + L2 LINE L2 3220 3305 -8 459 320 154 0 chr9 10777169 10777325 -107085302 - MER5A DNA MER1_type -6 183 4 2444 72 0 7 chr9 10778026 10778333 -107084294 - AluY SINE Alu -4 307 3 275 382 14 14 chr9 10778335 10778447 -107084180 - MIR SINE MIR -111 151 37 374 183 0 0 chr9 10778447 10778529 -107084098 + L1PB4 LINE L1 6068 6149 -7 275 382 14 14 chr9 10778529 10778560 -107084067 - MIR SINE MIR -224 38 8 189 341 11 23 chr9 10778871 10778959 -107083668 + L2 LINE L2 2261 2347 -967 226 296 0 0 chr9 10779668 10779722 -107082905 + L2 LINE L2 3219 3272 0 27 0 0 0 chr9 10779812 10779839 -107082788 + AT_rich Low_complexity Low_complexity 1 27 0 341 274 19 0 chr9 10780699 10780805 -107081822 - L1MC5 LINE L1 -67 7894 7787 362 288 54 0 chr9 10780981 10781092 -107081535 + L1ME3A LINE L1 6045 6161 -9 211 269 15 30 chr9 10781857 10781924 -107080703 + MIR SINE MIR 87 152 -110 190 376 28 50 chr9 10783105 10783246 -107079381 + MIR SINE MIR 9 146 -116 632 274 13 27 chr9 10783940 10784154 -107078473 - MIR SINE MIR 0 262 55 356 281 125 44 chr9 10785129 10785424 -107077203 - HAL1 LINE L1 -127 2380 2062 650 289 64 68 chr9 10785516 10785970 -107076657 - HAL1 LINE L1 -607 1900 1449 1726 140 68 0 chr9 10786871 10787166 -107075461 - AluSx SINE Alu 0 313 1 542 335 6 0 chr9 10787800 10787976 -107074651 + MER102a DNA MER1_type 143 319 -11 24 32 0 0 chr9 10790423 10790454 -107072173 + AT_rich Low_complexity Low_complexity 1 31 0 3511 98 17 2 chr9 10790803 10791325 -107071302 - L1MA2 LINE L1 -6 6298 5769 2998 46 0 3 chr9 10791333 10791702 -107070925 - L1PA5 LINE L1 -8 6146 5779 953 35 0 0 chr9 10791702 10791817 -107070810 + L1P2 LINE L1 5461 5575 -580 * 2834 165 8 36 chr9 10791804 10793500 -107069127 - L1MA2 LINE L1 -507 5797 4052 678 216 0 49 chr9 10793986 10794148 -107068479 - FRAM SINE Alu -12 164 11 26 0 0 0 chr9 10795106 10795132 -107067495 + AT_rich Low_complexity Low_complexity 1 26 0 229 250 104 10 chr9 10795886 10795982 -107066645 + MIR SINE MIR 102 206 -56 24 0 0 0 chr9 10796875 10796899 -107065728 + AT_rich Low_complexity Low_complexity 1 24 0 2199 108 20 6 chr9 10798020 10798363 -107064264 + L1MA2 LINE L1 5957 6304 0 195 308 13 51 chr9 10799280 10799358 -107063269 + L2 LINE L2 3099 3173 -99 386 286 130 25 chr9 10799637 10799798 -107062829 + MIR SINE MIR 56 233 -29 230 321 123 45 chr9 10800456 10800694 -107061933 + MLT1K LTR MaLR 142 405 -183 207 0 0 0 chr9 10800694 10800717 -107061910 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 230 321 123 45 chr9 10800717 10800746 -107061881 + MLT1K LTR MaLR 405 430 -158 1487 193 89 65 chr9 10800787 10801280 -107061347 + MLT1D LTR MaLR 1 505 0 864 144 0 0 chr9 10801862 10801994 -107060633 - FLAM_C SINE Alu 0 133 2 226 204 23 0 chr9 10802453 10802497 -107060130 + L2 LINE L2 3266 3310 -3 25 65 0 0 chr9 10802592 10802638 -107059989 + AT_rich Low_complexity Low_complexity 1 46 0 518 333 61 0 chr9 10802719 10802917 -107059710 + MIR SINE MIR 47 256 -6 2073 246 54 27 chr9 10804967 10805560 -107057067 - MER90 LTR ERV1 0 614 6 463 343 111 11 chr9 10805592 10805863 -107056764 + L2 LINE L2 2501 2798 -516 687 318 82 21 chr9 10805910 10806240 -107056387 + L2 LINE L2 2931 3280 -33 270 56 0 0 chr9 10807322 10807358 -107055269 + (TG)n Simple_repeat Simple_repeat 1 36 0 688 186 0 0 chr9 10807543 10807656 -107054971 + FLAM_C SINE Alu 1 113 -30 232 111 37 0 chr9 10807721 10807775 -107054852 + (TA)n Simple_repeat Simple_repeat 1 56 0 376 297 45 0 chr9 10807965 10808076 -107054551 - L2 LINE L2 -33 3280 3165 591 160 17 0 chr9 10808079 10808254 -107054373 + (TA)n Simple_repeat Simple_repeat 2 179 0 21 36 0 0 chr9 10808263 10808291 -107054336 + AT_rich Low_complexity Low_complexity 1 28 0 237 65 0 0 chr9 10808979 10809010 -107053617 + (T)n Simple_repeat Simple_repeat 1 31 0 2434 50 0 13 chr9 10809143 10809460 -107053167 - L1PA5 LINE L1 -8 6146 5834 351 174 0 0 chr9 10809970 10810056 -107052571 + GA-rich Low_complexity Low_complexity 2 87 0 390 330 77 6 chr9 10811227 10811409 -107051218 + MIR SINE MIR 47 241 -21 1405 131 31 207 chr9 10811567 10811988 -107050639 + MER7A DNA MER2_type 2 346 0 1299 205 4 15 chr9 10812132 10812400 -107050227 + AluJo SINE Alu 3 267 -45 245 192 0 0 chr9 10812400 10812452 -107050175 + (TA)n Simple_repeat Simple_repeat 1 52 0 442 250 0 43 chr9 10812453 10812569 -107050058 + MER77 LTR ERV1 491 601 -4 189 360 50 0 chr9 10812571 10812671 -107049956 - L2 LINE L2 -20 3293 3189 561 306 56 0 chr9 10812823 10812983 -107049644 - MIR SINE MIR -71 191 23 254 352 112 60 chr9 10813483 10814052 -107048575 - L2 LINE L2 -5 3267 2688 595 312 86 17 chr9 10814116 10814350 -107048277 + MIR SINE MIR 11 260 -2 21 36 0 0 chr9 10814402 10814430 -107048197 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr9 10814797 10814825 -107047802 + AT_rich Low_complexity Low_complexity 1 28 0 554 254 28 14 chr9 10815440 10815582 -107047045 + MER106A DNA MER1_type 1 144 -92 288 0 0 0 chr9 10817333 10817365 -107045262 + (TA)n Simple_repeat Simple_repeat 2 33 0 34 42 0 0 chr9 10817486 10817534 -107045093 + AT_rich Low_complexity Low_complexity 1 48 0 2802 178 55 3 chr9 10817542 10818268 -107044359 + L1MC1 LINE L1 5442 6322 -11 25 31 0 0 chr9 10818272 10818304 -107044323 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr9 10819932 10819956 -107042671 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr9 10821299 10821325 -107041302 + AT_rich Low_complexity Low_complexity 1 26 0 26 30 0 0 chr9 10821955 10821988 -107040639 + AT_rich Low_complexity Low_complexity 1 33 0 594 281 97 0 chr9 10823107 10823303 -107039324 + MER58C DNA MER1_type 1 215 0 1710 217 43 27 chr9 10823729 10824199 -107038428 + MLT1F LTR MaLR 5 542 0 264 119 51 0 chr9 10824359 10824418 -107038209 + (TA)n Simple_repeat Simple_repeat 1 62 0 517 294 91 5 chr9 10824947 10825168 -107037459 + MIR SINE MIR 13 252 -10 9460 200 31 10 chr9 10826276 10826711 -107035916 + L1PA14 LINE L1 3240 3664 -2497 465 50 0 0 chr9 10826711 10826771 -107035856 + (CA)n Simple_repeat Simple_repeat 2 61 0 9460 200 31 10 chr9 10826771 10829211 -107033416 + L1PA14 LINE L1 3664 6160 -1 256 319 11 11 chr9 10829251 10829345 -107033282 + MIR SINE MIR 112 205 -57 2004 123 0 35 chr9 10830171 10830487 -107032140 + AluSx SINE Alu 1 305 -7 1142 215 55 70 chr9 10830738 10831213 -107031414 - MER110A LTR ERV1 0 468 1 579 216 60 117 chr9 10832509 10832552 -107030075 + L2 LINE L2 3038 3082 -231 468 0 0 0 chr9 10832552 10832604 -107030023 + (CA)n Simple_repeat Simple_repeat 2 53 0 579 216 60 117 chr9 10832604 10832843 -107029784 + L2 LINE L2 3082 3304 -9 344 347 52 21 chr9 10833250 10833443 -107029184 + L2 LINE L2 1876 2074 -1240 796 273 72 29 chr9 10833604 10833981 -107028646 - Charlie7 DNA MER1_type -1889 723 331 235 180 20 0 chr9 10834163 10834213 -107028414 + (TAA)n Simple_repeat Simple_repeat 1 51 0 195 302 0 32 chr9 10834257 10834320 -107028307 - MIR SINE MIR -6 256 196 291 362 133 20 chr9 10834335 10834531 -107028096 - L3 LINE CR1 -1325 252 35 1358 82 117 0 chr9 10835075 10835281 -107027346 + MER30 DNA MER1_type 1 230 0 220 244 8 73 chr9 10835843 10835966 -107026661 + T-rich Low_complexity Low_complexity 6 120 0 210 360 90 9 chr9 10836077 10836141 -107026486 - L2 LINE L2 0 3272 3215 7047 53 0 3 chr9 10836141 10837569 -107025058 + L1PA6 LINE L1 4716 6148 -6 210 360 90 9 chr9 10837569 10837615 -107025012 - L2 LINE L2 -57 3215 3153 270 0 0 0 chr9 10838419 10838449 -107024178 + (TC)n Simple_repeat Simple_repeat 1 30 0 23 0 0 0 chr9 10839919 10839942 -107022685 + AT_rich Low_complexity Low_complexity 1 23 0 261 233 14 14 chr9 10840058 10840131 -107022496 + (TA)n Simple_repeat Simple_repeat 1 73 0 21 82 0 0 chr9 10842072 10842121 -107020506 + AT_rich Low_complexity Low_complexity 1 49 0 1745 138 42 18 chr9 10842142 10842425 -107020202 + AluSg SINE Alu 4 293 -17 305 274 32 42 chr9 10842999 10843094 -107019533 + MIR SINE MIR 86 179 -83 31 26 0 0 chr9 10843167 10843205 -107019422 + AT_rich Low_complexity Low_complexity 1 38 0 2530 168 33 6 chr9 10843274 10843761 -107018866 + L1MA4A LINE L1 5479 5978 -325 335 262 0 57 chr9 10843782 10843904 -107018723 + L1PB4 LINE L1 5941 6055 -101 269 320 41 10 chr9 10843922 10844019 -107018608 - MIR SINE MIR -71 191 92 21 82 0 0 chr9 10844388 10844437 -107018190 + AT_rich Low_complexity Low_complexity 1 49 0 7703 19 1 1 chr9 10845330 10846555 -107016072 + L1PA2 LINE L1 4931 6155 0 21 0 0 0 chr9 10847381 10847402 -107015225 + AT_rich Low_complexity Low_complexity 1 21 0 314 381 14 14 chr9 10849506 10849645 -107012982 - MIR3 SINE MIR -66 142 4 228 185 37 0 chr9 10850335 10850389 -107012238 + L1MC4 LINE L1 6648 6703 -1339 209 171 0 0 chr9 10850696 10850731 -107011896 + (CA)n Simple_repeat Simple_repeat 2 36 0 195 42 0 0 chr9 10852111 10852135 -107010492 + (TA)n Simple_repeat Simple_repeat 1 24 0 217 359 48 10 chr9 10852146 10852249 -107010378 - MIR SINE MIR -114 148 42 514 178 10 40 chr9 10852432 10852533 -107010094 + Tigger5 DNA MER2_type 2225 2322 -1 22 56 0 0 chr9 10852825 10852861 -107009766 + AT_rich Low_complexity Low_complexity 1 36 0 249 103 0 0 chr9 10854091 10854130 -107008497 + L1PA3 LINE L1 6115 6153 -2 320 365 67 47 chr9 10855109 10855408 -107007219 + L2 LINE L2 2530 2834 -480 227 357 64 32 chr9 10855489 10855646 -107006981 + L2 LINE L2 2897 3058 -214 180 0 0 0 chr9 10857951 10857971 -107004656 + (CA)n Simple_repeat Simple_repeat 1 20 0 1758 180 13 0 chr9 10860650 10860950 -107001677 - AluJb SINE Alu -8 304 1 192 386 0 39 chr9 10861207 10861334 -107001293 - L2 LINE L2 -255 3058 2937 23 0 0 0 chr9 10862670 10862693 -106999934 + AT_rich Low_complexity Low_complexity 1 23 0 261 233 14 14 chr9 10862809 10862882 -106999745 + (TA)n Simple_repeat Simple_repeat 2 74 0 21 82 0 0 chr9 10864825 10864874 -106997753 + AT_rich Low_complexity Low_complexity 1 49 0 1793 117 50 25 chr9 10864895 10865178 -106997449 + AluSg SINE Alu 4 293 -17 312 274 32 42 chr9 10865752 10865847 -106996780 + MIR SINE MIR 86 179 -83 31 26 0 0 chr9 10865920 10865958 -106996669 + AT_rich Low_complexity Low_complexity 1 38 0 2499 170 33 6 chr9 10866027 10866514 -106996113 + L1MA4A LINE L1 5479 5978 -325 335 262 0 57 chr9 10866535 10866657 -106995970 + L1PB4 LINE L1 5941 6055 -101 269 320 41 10 chr9 10866675 10866772 -106995855 - MIR SINE MIR -71 191 92 21 82 0 0 chr9 10867141 10867190 -106995437 + AT_rich Low_complexity Low_complexity 1 49 0 7699 19 1 1 chr9 10868083 10869308 -106993319 + L1PA2 LINE L1 4931 6155 0 21 0 0 0 chr9 10870133 10870154 -106992473 + AT_rich Low_complexity Low_complexity 1 21 0 314 381 14 14 chr9 10872257 10872396 -106990231 - MIR3 SINE MIR -66 142 4 228 185 37 0 chr9 10873086 10873140 -106989487 + L1MC4 LINE L1 6648 6703 -1339 209 171 0 0 chr9 10873447 10873482 -106989145 + (CA)n Simple_repeat Simple_repeat 2 36 0 258 32 0 0 chr9 10876680 10876711 -106985916 + (T)n Simple_repeat Simple_repeat 1 31 0 185 105 0 26 chr9 10878259 10878297 -106984330 + (TG)n Simple_repeat Simple_repeat 2 38 0 204 288 111 9 chr9 10878312 10878420 -106984207 - MIR SINE MIR -63 145 34 310 284 41 58 chr9 10878843 10879049 -106983578 - MIR SINE MIR -39 223 20 254 29 0 0 chr9 10879277 10879311 -106983316 + L1PA6 LINE L1 6117 6150 -4 5814 77 25 7 chr9 10879313 10880531 -106982096 + SVA Other Other 31 1385 -1 25 51 0 0 chr9 10880536 10880575 -106982052 + AT_rich Low_complexity Low_complexity 1 39 0 403 269 99 57 chr9 10881737 10881949 -106980678 + MIR SINE MIR 41 261 -1 5279 204 35 22 chr9 10882446 10884233 -106978394 - L1M2 LINE L1 -511 5801 3986 249 108 0 0 chr9 10885081 10885118 -106977509 + (CA)n Simple_repeat Simple_repeat 2 38 0 793 267 141 20 chr9 10887436 10888081 -106974546 - L1MB7 LINE L1 -7 6155 5419 3633 220 64 3 chr9 10888084 10889149 -106973478 + L1MA9 LINE L1 3205 4334 -1812 6506 83 28 23 chr9 10889173 10890099 -106972528 - L1PA7 LINE L1 -4 6150 5226 30 59 0 0 chr9 10890111 10890162 -106972465 + AT_rich Low_complexity Low_complexity 1 51 0 513 147 20 0 chr9 10890201 10890303 -106972324 - L1MB4 LINE L1 0 6180 6077 4090 207 48 17 chr9 10890347 10891886 -106970741 + L1MA9 LINE L1 4326 5927 -385 2280 106 3 0 chr9 10891889 10892192 -106970435 - AluSx SINE Alu -8 304 1 272 326 7 50 chr9 10892435 10892491 -106970136 + L2 LINE L2 1773 1830 -1484 1849 166 0 3 chr9 10892491 10892793 -106969834 - AluSx SINE Alu -11 301 1 272 326 7 50 chr9 10892793 10892877 -106969750 + L2 LINE L2 1830 1907 -1407 1182 200 9 9 chr9 10892968 10893188 -106969439 + AluJo SINE Alu 1 220 -92 248 189 0 0 chr9 10893188 10893241 -106969386 + FAM SINE Alu 127 179 0 609 219 175 32 chr9 10893964 10894302 -106968325 + L1ME2 LINE L1 5765 6150 -14 909 144 17 58 chr9 10894949 10895122 -106967505 - FRAM SINE Alu -13 163 1 767 158 25 0 chr9 10896209 10896329 -106966298 - FLAM_C SINE Alu -20 123 1 2214 120 0 7 chr9 10896380 10896680 -106965947 + AluSx SINE Alu 1 298 -14 1933 123 42 7 chr9 10896743 10897027 -106965600 + AluSx SINE Alu 9 302 -10 647 256 106 45 chr9 10897080 10897326 -106965301 - MIR SINE MIR -1 261 1 372 354 101 13 chr9 10897330 10897567 -106965060 + L2 LINE L2 2807 3064 -208 192 346 37 12 chr9 10897651 10897732 -106964895 + L2 LINE L2 3190 3272 0 1376 174 27 15 chr9 10898229 10898571 -106964056 + Tigger3(Golem) DNA MER2_type 48 3029 0 425 255 47 65 chr9 10898847 10899020 -106963607 - MIR SINE MIR -70 138 8 2504 78 3 0 chr9 10899050 10899359 -106963268 + AluSp SINE Alu 2 311 -2 5975 77 5 2 chr9 10900556 10901357 -106961270 + L1PA7 LINE L1 5341 6143 -11 326 299 36 28 chr9 10901578 10901829 -106960798 + L1M4 LINE L1 3875 4127 -2019 457 317 67 18 chr9 10902323 10902487 -106960140 + MIR3 SINE MIR 30 201 -7 1753 189 42 3 chr9 10902537 10902871 -106959756 - MER7A DNA MER2_type 0 346 2 1113 170 13 45 chr9 10903534 10903697 -106958930 - MER20 DNA MER1_type -2 217 61 2067 122 24 10 chr9 10903697 10903991 -106958636 + AluSx SINE Alu 1 298 -14 1113 170 13 45 chr9 10903991 10904051 -106958576 - MER20 DNA MER1_type -158 61 1 305 339 36 9 chr9 10906112 10906224 -106956403 + L1ME LINE L1 3 117 -5953 360 304 132 67 chr9 10907200 10907542 -106955085 + L1M2 LINE L1 611 974 -5875 347 265 145 8 chr9 10908383 10908500 -106954127 + MIR3 SINE MIR 30 162 -46 198 329 13 25 chr9 10909597 10909676 -106952951 + L2 LINE L2 3004 3081 -232 958 128 20 13 chr9 10909790 10909939 -106952688 - AluJo SINE Alu -159 153 4 1547 104 5 0 chr9 10909962 10910174 -106952453 + AluSg1 SINE Alu 1 213 -96 2498 51 0 0 chr9 10910174 10910466 -106952161 + AluSc SINE Alu 1 293 -16 577 75 25 0 chr9 10910466 10910546 -106952081 + AluSg1 SINE Alu 205 286 -26 389 250 36 0 chr9 10910553 10910637 -106951990 + L2 LINE L2 3203 3289 -24 181 360 30 30 chr9 10914907 10915007 -106947620 + MER5A DNA MER1_type 69 168 -21 21 0 0 0 chr9 10915303 10915324 -106947303 + AT_rich Low_complexity Low_complexity 1 21 0 214 247 14 27 chr9 10916163 10916236 -106946391 + T-rich Low_complexity Low_complexity 6 77 0 675 233 7 20 chr9 10916651 10916801 -106945826 + MER5A DNA MER1_type 5 152 -37 359 217 12 12 chr9 10916911 10916994 -106945633 - MLT1K LTR MaLR -338 250 168 495 0 0 0 chr9 10917054 10917109 -106945518 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 2172 98 0 16 chr9 10917996 10918301 -106944326 - AluSq SINE Alu -13 300 1 261 0 0 0 chr9 10918726 10918755 -106943872 + (TA)n Simple_repeat Simple_repeat 1 29 0 2189 98 0 0 chr9 10918755 10919032 -106943595 - AluSp SINE Alu -7 306 30 476 152 0 0 chr9 10919784 10919850 -106942777 - AluJo SINE Alu -120 192 127 1693 158 50 4 chr9 10919860 10920020 -106942607 - AluJb SINE Alu -20 292 112 186 43 0 0 chr9 10920020 10920043 -106942584 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1693 158 50 4 chr9 10920043 10920161 -106942466 - AluJb SINE Alu -200 112 1 1993 90 14 31 chr9 10920433 10920723 -106941904 + AluY SINE Alu 1 285 -26 775 215 108 0 chr9 10920822 10921036 -106941591 - L1ME2 LINE L1 -10 6154 5918 1097 209 5 5 chr9 10921086 10921287 -106941340 - AluJo SINE Alu -92 220 20 239 213 150 0 chr9 10921302 10921382 -106941245 - L1ME2 LINE L1 -279 5885 5794 215 341 111 14 chr9 10921382 10921590 -106941037 + L2 LINE L2 1742 1969 -1345 233 315 143 19 chr9 10921590 10921806 -106940821 + L2 LINE L2 2328 2570 -744 194 348 11 11 chr9 10921958 10922047 -106940580 - MIR SINE MIR -63 145 57 2179 137 0 0 chr9 10923109 10923402 -106939225 + AluSx SINE Alu 3 295 -17 1416 188 72 51 chr9 10923662 10923955 -106938672 - AluJo SINE Alu -13 299 1 309 312 115 13 chr9 10924156 10924313 -106938314 + MIR SINE MIR 80 252 -10 445 287 44 48 chr9 10924314 10924579 -106938048 - L1ME2 LINE L1 -456 5665 5443 662 179 0 0 chr9 10924602 10924714 -106937913 - AluJb SINE Alu -81 231 120 340 287 41 26 chr9 10924828 10925023 -106937604 + L1MA9 LINE L1 5987 6184 -128 26 0 0 0 chr9 10925038 10925064 -106937563 + AT_rich Low_complexity Low_complexity 1 26 0 304 374 39 0 chr9 10925180 10925335 -106937292 - MIR SINE MIR -82 180 20 30 93 0 0 chr9 10925659 10925745 -106936882 + AT_rich Low_complexity Low_complexity 1 86 0 193 128 43 0 chr9 10925774 10925821 -106936806 + (TA)n Simple_repeat Simple_repeat 2 50 0 353 341 17 34 chr9 10926422 10926598 -106936029 + HAL1b LINE L1 330 502 -846 22 35 0 0 chr9 10926738 10926767 -106935860 + AT_rich Low_complexity Low_complexity 1 29 0 1325 171 98 15 chr9 10926940 10927214 -106935413 + AluSx SINE Alu 1 297 -15 373 181 21 0 chr9 10927214 10927308 -106935319 + GA-rich Low_complexity Low_complexity 1 96 0 31 26 0 0 chr9 10927504 10927542 -106935085 + AT_rich Low_complexity Low_complexity 1 38 0 415 228 87 0 chr9 10928584 10928676 -106933951 - MIR SINE MIR -78 184 85 195 169 43 26 chr9 10929111 10929161 -106933466 - MIR SINE MIR -57 151 105 181 171 0 49 chr9 10929314 10929355 -106933272 + MIR SINE MIR 39 77 -131 196 128 77 26 chr9 10930168 10930207 -106932420 + L2 LINE L2 3230 3270 -2 331 284 127 22 chr9 10930253 10930387 -106932240 - MIR SINE MIR -70 192 45 258 32 0 0 chr9 10930604 10930635 -106931992 + (TG)n Simple_repeat Simple_repeat 1 31 0 1367 94 5 11 chr9 10930736 10930927 -106931700 + AluY SINE Alu 111 300 -11 2474 60 0 0 chr9 10931062 10931360 -106931267 + AluY SINE Alu 4 301 -10 412 196 143 58 chr9 10931371 10931435 -106931192 + L2 LINE L2 3109 3166 -147 695 206 0 22 chr9 10931435 10931571 -106931056 - FLAM_A SINE Alu 0 133 1 412 196 143 58 chr9 10931571 10931695 -106930932 + L2 LINE L2 3166 3313 0 921 167 0 42 chr9 10932400 10932568 -106930059 + MER20 DNA MER1_type 59 219 0 1711 178 7 26 chr9 10933085 10933389 -106929238 - AluJo SINE Alu -14 298 1 909 188 48 0 chr9 10933417 10933582 -106929045 + AluJb SINE Alu 127 299 -13 1085 237 16 0 chr9 10933721 10933974 -106928653 - MER58 DNA MER1_type -2163 257 1 27 29 0 0 chr9 10934478 10934512 -106928115 + AT_rich Low_complexity Low_complexity 1 34 0 2385 88 0 3 chr9 10934603 10934899 -106927728 + AluSx SINE Alu 1 295 -17 1833 174 0 20 chr9 10935025 10935324 -106927303 + AluJo SINE Alu 1 293 -19 202 271 172 16 chr9 10935839 10935961 -106926666 - MIR3 SINE MIR -62 146 6 248 333 26 26 chr9 10936278 10936395 -106926232 + L2 LINE L2 3134 3250 -22 383 338 69 61 chr9 10936736 10937097 -106925530 - L2 LINE L2 -12 3260 2897 431 244 61 61 chr9 10937273 10937404 -106925223 - MER20 DNA MER1_type -88 131 1 27 0 0 26 chr9 10937475 10937493 -106925134 + AT_rich Low_complexity Low_complexity 1 18 -19 3158 69 16 5 chr9 10937493 10937940 -106924687 + L1PA7 LINE L1 5700 6151 -3 27 0 0 26 chr9 10937940 10937959 -106924668 + AT_rich Low_complexity Low_complexity 18 37 0 278 360 205 5 chr9 10938079 10938279 -106924348 + MIR SINE MIR 5 244 -18 25 31 0 0 chr9 10938736 10938768 -106923859 + AT_rich Low_complexity Low_complexity 1 32 0 27 49 0 0 chr9 10939514 10939555 -106923072 + AT_rich Low_complexity Low_complexity 1 41 0 358 306 49 35 chr9 10941430 10941574 -106921053 - L2 LINE L2 0 3313 3168 189 197 155 28 chr9 10942148 10942219 -106920408 - L2 LINE L2 -4 3268 3189 21 36 0 0 chr9 10942507 10942535 -106920092 + AT_rich Low_complexity Low_complexity 1 28 0 6799 74 6 0 chr9 10943021 10944291 -106918336 + L1PA8 LINE L1 4893 6171 -1 212 410 38 0 chr9 10944454 10944559 -106918068 + MIR SINE MIR 52 160 -102 231 88 0 0 chr9 10944855 10944889 -106917738 + (TA)n Simple_repeat Simple_repeat 2 35 0 1093 176 19 37 chr9 10945716 10945762 -106916865 + AluJb SINE Alu 85 130 -182 312 27 0 0 chr9 10945762 10945799 -106916828 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 1093 176 19 37 chr9 10945799 10945968 -106916659 + AluJb SINE Alu 130 296 -16 26 64 0 0 chr9 10946752 10946799 -106915828 + AT_rich Low_complexity Low_complexity 1 47 0 378 250 82 41 chr9 10947251 10947447 -106915180 + L1MC5 LINE L1 7726 7929 -32 205 167 0 0 chr9 10947731 10947767 -106914860 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 22 0 0 0 chr9 10947858 10947880 -106914747 + AT_rich Low_complexity Low_complexity 1 22 0 250 263 21 21 chr9 10948124 10948219 -106914408 + A-rich Low_complexity Low_complexity 5 99 0 2269 64 0 0 chr9 10948223 10948549 -106914078 + AluY SINE Alu 1 326 0 4976 185 31 24 chr9 10948561 10950204 -106912423 + L1PB3 LINE L1 4143 5803 -351 180 77 0 0 chr9 10950204 10950230 -106912397 + (CA)n Simple_repeat Simple_repeat 2 27 0 4976 185 31 24 chr9 10950230 10950576 -106912051 + L1PB3 LINE L1 5803 6145 -9 * 5283 183 39 5 chr9 10950575 10951958 -106910669 - L1M1 LINE L1 -705 7019 5606 372 258 0 0 chr9 10951978 10952067 -106910560 - L1M1 LINE L1 -2759 4806 4718 * 3837 118 17 0 chr9 10952057 10952686 -106909941 - L1P LINE L1 -732 5422 4781 3010 198 22 14 chr9 10952677 10953724 -106908903 - L1M1 LINE L1 -3233 4332 3274 * 1558 117 0 25 chr9 10953727 10953967 -106908660 + L1PA8A LINE L1 5884 6117 -14 9334 194 19 41 chr9 10953988 10954100 -106908527 - L1M1 LINE L1 -5687 1878 1765 369 0 0 0 chr9 10954100 10954141 -106908486 + (TC)n Simple_repeat Simple_repeat 2 42 0 9334 194 19 41 chr9 10954141 10954219 -106908408 - L1M1 LINE L1 -5800 1765 1687 2464 70 0 0 chr9 10954219 10954521 -106908106 + AluY SINE Alu 1 302 -9 9334 194 19 41 chr9 10954521 10956227 -106906400 - L1M1 LINE L1 -5878 1687 22 415 301 17 46 chr9 10957127 10957300 -106905327 + L2 LINE L2 3146 3313 0 6794 73 8 2 chr9 10957849 10958995 -106903632 - L1PA7 LINE L1 -2 6152 5004 4862 110 7 1 chr9 10958995 10959738 -106902889 + L1PA7 LINE L1 4250 4996 -1150 219 289 91 25 chr9 10960550 10960671 -106901956 - MIR SINE MIR -46 216 88 21 0 0 0 chr9 10960848 10960869 -106901758 + AT_rich Low_complexity Low_complexity 1 21 0 211 293 0 0 chr9 10961672 10961730 -106900897 - MIR SINE MIR -21 241 184 27 29 0 0 chr9 10962148 10962182 -106900445 + AT_rich Low_complexity Low_complexity 1 34 0 25 31 0 0 chr9 10962522 10962554 -106900073 + AT_rich Low_complexity Low_complexity 1 32 0 2450 125 0 0 chr9 10962635 10963082 -106899545 - L1P4 LINE L1 -558 5608 5159 2031 156 17 3 chr9 10963082 10963440 -106899187 + L1PA16 LINE L1 5793 6156 -10 352 311 42 17 chr9 10963495 10963614 -106899013 + L2 LINE L2 3149 3270 -2 2736 0 0 7 chr9 10964885 10965188 -106897439 + AluYa5 SINE Alu 1 301 -10 587 76 0 0 chr9 10965369 10965448 -106897179 - L1PA8 LINE L1 -224 5948 5870 25 51 0 0 chr9 10966012 10966051 -106896576 + AT_rich Low_complexity Low_complexity 1 39 0 6000 145 35 5 chr9 10966545 10967636 -106894991 - L1MA2 LINE L1 0 6304 5184 577 257 22 34 chr9 10967971 10968150 -106894477 - MER5B DNA MER1_type -1 177 1 22 0 0 0 chr9 10968417 10968439 -106894188 + AT_rich Low_complexity Low_complexity 1 22 0 202 291 8 94 chr9 10968959 10969086 -106893541 - L3 LINE CR1 -1 1576 1461 183 42 0 0 chr9 10969327 10969351 -106893276 + (A)n Simple_repeat Simple_repeat 1 24 0 640 297 28 73 chr9 10969701 10969968 -106892659 - L2 LINE L2 -2 3311 3060 2548 52 0 0 chr9 10969968 10970275 -106892352 + AluY SINE Alu 1 307 -4 640 297 28 73 chr9 10970275 10970334 -106892293 - L2 LINE L2 -253 3060 3000 390 295 3 48 chr9 10970765 10970930 -106891697 - MIR SINE MIR -65 143 19 1392 202 50 106 chr9 10972344 10972573 -106890054 - L1MD3 LINE L1 -1 7994 7754 1218 87 49 0 chr9 10972573 10972758 -106889869 + L1MA3 LINE L1 6112 6305 0 1392 202 50 106 chr9 10972758 10973048 -106889579 - L1MD3 LINE L1 -241 7754 7504 1210 35 0 0 chr9 10973048 10973193 -106889434 - L1P LINE L1 -1969 4177 4033 8876 54 7 0 chr9 10973193 10975089 -106887538 + L1PA5 LINE L1 4253 6153 -1 378 278 28 9 chr9 10975109 10975217 -106887410 - L1MD3 LINE L1 -482 7513 7404 2618 244 77 112 chr9 10975218 10975600 -106887027 - L1MD3 LINE L1 -718 7277 6883 312 27 0 0 chr9 10975600 10975637 -106886990 + (TCTA)n Simple_repeat Simple_repeat 1 37 0 2618 244 77 112 chr9 10975637 10976709 -106885918 - L1MD3 LINE L1 -1112 6883 5775 2295 178 29 2 chr9 10976709 10977158 -106885469 - L1MA4 LINE L1 -6 6294 5834 2618 244 77 112 chr9 10977158 10977554 -106885073 - L1MD3 LINE L1 -2220 5775 5491 1796 143 0 41 chr9 10977554 10977847 -106884780 - AluSg SINE Alu -29 281 1 2618 244 77 112 chr9 10977847 10977902 -106884725 - L1MD3 LINE L1 -2504 5491 5436 243 0 0 0 chr9 10977986 10978013 -106884614 + (TG)n Simple_repeat Simple_repeat 2 28 0 249 300 0 0 chr9 10978029 10978119 -106884508 + L1MC4 LINE L1 6614 6703 -1339 243 152 0 0 chr9 10978139 10978185 -106884442 - LTR66 LTR ERVL -171 439 394 241 152 0 0 chr9 10978145 10978191 -106884436 + LTR66 LTR ERVL 394 439 -171 * 183 42 0 0 chr9 10979257 10979281 -106883346 + (TTTTTG)n Simple_repeat Simple_repeat 6 29 0 249 33 0 0 chr9 10979306 10979336 -106883291 + (TG)n Simple_repeat Simple_repeat 1 30 0 782 260 48 18 chr9 10979668 10980004 -106882623 + MLT1I LTR MaLR 6 405 -4 23 54 0 0 chr9 10980388 10980425 -106882202 + AT_rich Low_complexity Low_complexity 1 37 0 26 50 0 0 chr9 10980580 10980620 -106882007 + AT_rich Low_complexity Low_complexity 1 40 0 28 48 0 0 chr9 10981675 10981717 -106880910 + AT_rich Low_complexity Low_complexity 1 42 0 4902 200 22 7 chr9 10981717 10983643 -106878984 - L1MB1 LINE L1 -6 6162 4209 236 234 13 13 chr9 10983729 10983806 -106878821 + (TA)n Simple_repeat Simple_repeat 1 77 0 2406 68 0 0 chr9 10984669 10984965 -106877662 - AluY SINE Alu -15 296 1 23 0 0 0 chr9 10984973 10984996 -106877631 + AT_rich Low_complexity Low_complexity 1 23 0 225 0 0 0 chr9 10985391 10985416 -106877211 + (A)n Simple_repeat Simple_repeat 1 25 0 13268 151 25 29 chr9 10985702 10988108 -106874519 + Tigger1 DNA MER2_type 24 2418 0 24 67 0 0 chr9 10988961 10989006 -106873621 + AT_rich Low_complexity Low_complexity 1 45 0 219 88 0 0 chr9 10989723 10989757 -106872870 + (TA)n Simple_repeat Simple_repeat 1 34 0 363 121 0 0 chr9 10989760 10989818 -106872809 + (GA)n Simple_repeat Simple_repeat 2 59 0 648 276 26 49 chr9 10990025 10990289 -106872338 - MLT1B LTR MaLR -4 386 129 21 36 0 0 chr9 10991761 10991789 -106870838 + AT_rich Low_complexity Low_complexity 1 28 0 270 0 0 0 chr9 10991861 10991891 -106870736 + (TG)n Simple_repeat Simple_repeat 2 31 0 231 250 80 11 chr9 10991956 10992044 -106870583 + Charlie2 DNA MER1_type 173 266 -2596 783 250 14 10 chr9 10992049 10992257 -106870370 - MER3 DNA MER1_type 0 209 1 404 274 94 18 chr9 10992316 10992645 -106869982 + Charlie2 DNA MER1_type 2478 2831 -31 563 273 105 43 chr9 10994343 10994552 -106868075 + MIR SINE MIR 13 234 -28 4368 66 2 0 chr9 10995301 10995864 -106866763 + L1PA7 LINE L1 5591 6154 0 2538 84 11 0 chr9 10995864 10996207 -106866420 + L1PA8 LINE L1 5815 6165 -7 1228 264 53 57 chr9 10996600 10997088 -106865539 + L1MC4 LINE L1 6745 7232 -810 1981 146 0 0 chr9 10997088 10997383 -106865244 - AluSx SINE Alu -17 295 1 1228 264 53 57 chr9 10997383 10997436 -106865191 + L1MC4 LINE L1 7232 7284 -758 375 273 1 10 chr9 10998009 10998121 -106864506 + L1MC4 LINE L1 7224 7396 -473 233 29 29 0 chr9 10998575 10998609 -106864018 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 294 97 43 21 chr9 10998695 10998788 -106863839 + (TA)n Simple_repeat Simple_repeat 1 95 0 1517 191 62 76 chr9 10999036 10999459 -106863168 + MSTB1 LTR MaLR 16 432 0 21 0 0 0 chr9 10999724 10999745 -106862882 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 10999884 10999905 -106862722 + AT_rich Low_complexity Low_complexity 1 21 0 33 0 0 0 chr9 11000106 11000139 -106862488 + AT_rich Low_complexity Low_complexity 1 33 0 31 0 0 0 chr9 11000510 11000541 -106862086 + AT_rich Low_complexity Low_complexity 1 31 0 180 360 30 30 chr9 11002229 11002329 -106860298 + MER5A DNA MER1_type 69 168 -21 21 0 0 0 chr9 11002625 11002646 -106859981 + AT_rich Low_complexity Low_complexity 1 21 0 214 247 14 27 chr9 11003485 11003558 -106859069 + T-rich Low_complexity Low_complexity 6 77 0 659 233 7 20 chr9 11003970 11004120 -106858507 + MER5A DNA MER1_type 5 152 -37 368 283 104 40 chr9 11004230 11004373 -106858254 - MLT1K LTR MaLR -338 250 93 531 0 0 0 chr9 11004373 11004432 -106858195 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 368 283 104 40 chr9 11004432 11004461 -106858166 - MLT1K LTR MaLR -495 93 67 2028 137 0 0 chr9 11005319 11005618 -106857009 - AluSx SINE Alu -13 299 1 1333 224 34 31 chr9 11005630 11006046 -106856581 + LTR52 LTR ERVL 3 419 -2 1775 157 10 7 chr9 11006160 11006459 -106856168 - AluSx SINE Alu -10 302 3 23 54 0 0 chr9 11007666 11007703 -106854924 + AT_rich Low_complexity Low_complexity 1 37 0 24 77 0 0 chr9 11007730 11007782 -106854845 + AT_rich Low_complexity Low_complexity 1 52 0 1347 112 4 13 chr9 11008854 11009174 -106853453 - AluSp SINE Alu -15 298 11 602 227 0 0 chr9 11009186 11009318 -106853309 - FLAM_C SINE Alu -1 132 1 23 54 0 0 chr9 11009411 11009448 -106853179 + AT_rich Low_complexity Low_complexity 1 37 0 432 82 0 0 chr9 11009613 11009674 -106852953 + (CA)n Simple_repeat Simple_repeat 2 62 0 21 36 0 0 chr9 11012625 11012653 -106849974 + AT_rich Low_complexity Low_complexity 1 28 0 200 143 24 0 chr9 11013819 11013861 -106848766 + (TA)n Simple_repeat Simple_repeat 1 43 0 453 99 4 0 chr9 11016415 11016485 -106846142 - L1PA16 LINE L1 -1 6155 6084 600 305 106 7 chr9 11016486 11016768 -106845859 - LTR16C LTR ERVL -5 486 177 1486 215 0 16 chr9 11017185 11017497 -106845130 + AluJo SINE Alu 1 307 -5 1329 220 87 32 chr9 11017530 11017876 -106844751 + MLT1A1 LTR MaLR 1 365 0 2386 67 0 6 chr9 11020780 11021093 -106841534 - AluY SINE Alu 0 311 1 350 305 69 93 chr9 11022110 11022474 -106840153 + L1ME4a LINE L1 5530 5884 -237 229 227 15 36 chr9 11023506 11023593 -106839034 + CT-rich Low_complexity Low_complexity 1 134 0 558 271 40 13 chr9 11024031 11024182 -106838445 + MER45A DNA AcHobo 1 155 -23 248 170 75 0 chr9 11024663 11024716 -106837911 + MIR SINE MIR 69 125 -137 * 277 276 138 46 chr9 11024701 11024897 -106837730 + L2 LINE L2 3100 3313 0 335 222 172 0 chr9 11025455 11025554 -106837073 - MER3 DNA MER1_type -13 196 81 7587 22 1 7 chr9 11025685 11026711 -106835916 + L1PA3 LINE L1 5135 6155 0 781 226 0 6 chr9 11026879 11027043 -106835584 - MER3 DNA MER1_type -46 163 1 213 272 154 62 chr9 11027242 11027437 -106835190 + MIR SINE MIR 1 213 -49 262 320 0 0 chr9 11027605 11027680 -106834947 + L2 LINE L2 3235 3309 -4 252 277 85 0 chr9 11027857 11027951 -106834676 + MIR3 SINE MIR 100 201 -7 240 335 61 30 chr9 11029274 11029438 -106833189 + MLT1K LTR MaLR 160 328 -260 22 0 0 0 chr9 11029694 11029716 -106832911 + AT_rich Low_complexity Low_complexity 1 22 0 219 167 24 0 chr9 11029771 11029813 -106832814 + (TTG)n Simple_repeat Simple_repeat 2 44 0 195 42 0 0 chr9 11029964 11029988 -106832639 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 1364 183 22 51 chr9 11030137 11030448 -106832179 - AluJb SINE Alu -10 302 1 21 71 0 0 chr9 11031374 11031416 -106831211 + AT_rich Low_complexity Low_complexity 1 42 0 202 263 26 13 chr9 11031946 11032022 -106830605 + (CATATA)n Simple_repeat Simple_repeat 4 80 0 723 303 87 16 chr9 11032135 11032571 -106830056 - L1ME3A LINE L1 -225 5945 5479 462 271 94 39 chr9 11032683 11033044 -106829583 - L1ME3A LINE L1 -856 5290 4910 186 49 49 24 chr9 11034050 11034091 -106828536 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 5450 27 0 0 chr9 11034102 11034741 -106827886 - L1PA4 LINE L1 -3 6152 5514 4533 39 5 0 chr9 11034741 11035412 -106827215 + L1PA4 LINE L1 4827 5499 -656 25 0 0 0 chr9 11035546 11035571 -106827056 + AT_rich Low_complexity Low_complexity 1 25 0 243 0 0 0 chr9 11035639 11035666 -106826961 + (TC)n Simple_repeat Simple_repeat 2 28 0 234 105 0 0 chr9 11036694 11036732 -106825895 + (CA)n Simple_repeat Simple_repeat 1 38 0 347 269 67 37 chr9 11037590 11037724 -106824903 + MIR SINE MIR 6 143 -119 1997 149 3 20 chr9 11037786 11038129 -106824498 - MER1B DNA MER1_type 0 337 1 1303 159 10 0 chr9 11039626 11039833 -106822794 + L1PA13 LINE L1 1 209 -6578 637 136 0 0 chr9 11039978 11040089 -106822538 + L1PA8 LINE L1 6022 6171 -1 216 97 0 0 chr9 11040331 11040362 -106822265 + (TG)n Simple_repeat Simple_repeat 2 32 0 185 237 68 17 chr9 11040584 11040643 -106821984 + MIR SINE MIR 85 146 -62 243 141 31 62 chr9 11040929 11040993 -106821634 + LTR66 LTR ERVL 402 463 -147 218 313 0 0 chr9 11041886 11041953 -106820674 + CT-rich Low_complexity Low_complexity 2 68 0 719 238 18 0 chr9 11043632 11043800 -106818827 + MLT1D LTR MaLR 335 505 0 2262 100 13 0 chr9 11044044 11044343 -106818284 - AluSx SINE Alu -9 303 1 21 0 0 0 chr9 11044489 11044510 -106818117 + AT_rich Low_complexity Low_complexity 1 21 0 841 109 7 43 chr9 11044853 11044991 -106817636 - L1PA16 LINE L1 -1 6165 6033 189 0 0 0 chr9 11044994 11045015 -106817612 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1420 111 5 0 chr9 11045025 11045257 -106817370 - L1PA8 LINE L1 0 6172 5955 947 85 0 8 chr9 11045257 11045386 -106817241 + L1PA8 LINE L1 5796 5923 -208 * 4591 128 46 7 chr9 11045381 11046139 -106816488 - L1PA16 LINE L1 -125 6041 5254 21 0 0 0 chr9 11046820 11046841 -106815786 + AT_rich Low_complexity Low_complexity 1 21 0 698 332 12 16 chr9 11047112 11047368 -106815259 + MIR SINE MIR 2 256 -6 2243 50 0 84 chr9 11049588 11049911 -106812716 - AluY SINE Alu -15 296 1 207 100 0 0 chr9 11050316 11050346 -106812281 + (A)n Simple_repeat Simple_repeat 1 30 0 26 64 0 0 chr9 11051331 11051378 -106811249 + AT_rich Low_complexity Low_complexity 1 47 0 229 89 44 0 chr9 11051838 11051883 -106810744 + (CA)n Simple_repeat Simple_repeat 2 48 0 21 0 0 0 chr9 11053587 11053608 -106809019 + AT_rich Low_complexity Low_complexity 1 21 0 264 30 0 0 chr9 11054561 11054594 -106808033 + (CA)n Simple_repeat Simple_repeat 2 34 0 446 284 46 46 chr9 11054876 11055094 -106807533 + L2 LINE L2 3000 3217 -96 21 71 0 0 chr9 11056042 11056084 -106806543 + AT_rich Low_complexity Low_complexity 1 42 0 252 253 113 27 chr9 11056441 11056457 -106806170 - L1MA10 LINE L1 -3 6331 6316 1281 211 64 36 chr9 11056457 11056845 -106805782 - L1ME2 LINE L1 -8 6156 5758 39 0 0 0 chr9 11057025 11057064 -106805563 + AT_rich Low_complexity Low_complexity 1 39 0 226 211 14 56 chr9 11057200 11057271 -106805356 + MLT1J LTR MaLR 3 70 -472 519 237 137 80 chr9 11057954 11058203 -106804424 + MLT1F1 LTR MaLR 278 565 -2 230 250 0 0 chr9 11058692 11058744 -106803883 + LTR30 LTR ERV1 1 52 -670 621 180 41 95 chr9 11058744 11059009 -106803618 + LTR12 LTR ERV1 55 258 -456 248 271 8 78 chr9 11059009 11059138 -106803489 + LTR30 LTR ERV1 524 643 -79 707 100 0 0 chr9 11059140 11059240 -106803387 + LTR12 LTR ERV1 615 714 0 421 255 11 0 chr9 11059367 11059461 -106803166 - MER5A DNA MER1_type -86 103 9 32 0 0 0 chr9 11061777 11061809 -106800818 + AT_rich Low_complexity Low_complexity 1 32 0 216 325 81 31 chr9 11062205 11062365 -106800262 - MIR SINE MIR -58 204 37 21 36 0 0 chr9 11062707 11062735 -106799892 + AT_rich Low_complexity Low_complexity 1 28 0 183 123 0 53 chr9 11063204 11063261 -106799366 + (TA)n Simple_repeat Simple_repeat 2 55 0 259 316 73 37 chr9 11064658 11064794 -106797833 + MIR3 SINE MIR 17 157 -51 466 16 32 0 chr9 11064804 11064867 -106797760 + (TG)n Simple_repeat Simple_repeat 2 66 0 392 291 7 43 chr9 11065060 11065201 -106797426 + MLT1J LTR MaLR 24 159 -352 28 0 0 0 chr9 11067253 11067281 -106795346 + AT_rich Low_complexity Low_complexity 1 28 0 182 255 0 0 chr9 11067725 11067772 -106794855 + MER5C DNA MER1_type 159 205 -119 821 227 29 0 chr9 11069679 11069851 -106792776 + MIR SINE MIR 86 262 0 21 0 0 0 chr9 11070591 11070612 -106792015 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr9 11073337 11073367 -106789260 + AT_rich Low_complexity Low_complexity 1 30 0 252 239 56 0 chr9 11074176 11074247 -106788380 + MIR3 SINE MIR 120 194 -14 23 0 0 0 chr9 11074260 11074283 -106788344 + AT_rich Low_complexity Low_complexity 1 23 0 195 42 0 0 chr9 11078342 11078366 -106784261 + (A)n Simple_repeat Simple_repeat 1 24 0 392 297 21 102 chr9 11078829 11079112 -106783515 - L1M2 LINE L1 -5720 1129 870 28 29 0 0 chr9 11079231 11079266 -106783361 + GC_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr9 11079309 11079340 -106783287 + GC_rich Low_complexity Low_complexity 1 31 0 180 0 0 0 chr9 11079578 11079598 -106783029 + (TTA)n Simple_repeat Simple_repeat 2 21 0 205 182 0 0 chr9 11080762 11080795 -106781832 + polypyrimidine Low_complexity Low_complexity 2 34 0 451 269 44 76 chr9 11083006 11083255 -106779372 + LTR33 LTR ERVL 1 241 -280 1680 233 22 80 chr9 11083653 11084241 -106778386 + MLT2B3 LTR ERVL 1 554 0 1932 125 24 0 chr9 11084321 11084608 -106778019 + AluSg SINE Alu 1 294 -16 24 0 0 0 chr9 11085035 11085059 -106777568 + AT_rich Low_complexity Low_complexity 1 24 0 1374 192 43 14 chr9 11085284 11085565 -106777062 - AluJb SINE Alu -23 289 1 372 286 62 50 chr9 11085566 11085727 -106776900 - MIR SINE MIR -89 173 11 21 57 0 0 chr9 11086373 11086408 -106776219 + AT_rich Low_complexity Low_complexity 1 35 0 2015 122 10 0 chr9 11087038 11087334 -106775293 - AluSg SINE Alu -11 299 1 43 56 0 0 chr9 11088348 11088419 -106774208 + AT_rich Low_complexity Low_complexity 1 71 0 2577 151 9 14 chr9 11088795 11089225 -106773402 - MSTA LTR MaLR 0 428 1 6791 194 61 0 chr9 11089225 11090507 -106772120 - MSTA-int LTR MaLR 0 1651 292 341 359 23 8 chr9 11092722 11092853 -106769774 + MIR SINE MIR 2 134 -128 302 232 172 10 chr9 11092898 11092997 -106769630 + MIR SINE MIR 114 228 -34 218 347 163 0 chr9 11094181 11094279 -106768348 + MIR SINE MIR 75 188 -74 22 70 0 0 chr9 11094488 11094531 -106768096 + AT_rich Low_complexity Low_complexity 1 43 0 304 272 64 56 chr9 11094808 11094933 -106767694 + MIR SINE MIR 64 189 -73 22 0 0 0 chr9 11095054 11095076 -106767551 + AT_rich Low_complexity Low_complexity 1 22 0 248 211 39 102 chr9 11095651 11095779 -106766848 + MLT1L LTR MaLR 492 611 -4 23 0 0 0 chr9 11095819 11095842 -106766785 + AT_rich Low_complexity Low_complexity 1 23 0 210 143 0 0 chr9 11096116 11096151 -106766476 + (CA)n Simple_repeat Simple_repeat 2 36 0 222 381 17 8 chr9 11096460 11096578 -106766049 - MIR3 SINE MIR 0 208 90 2102 113 0 0 chr9 11096696 11097005 -106765622 + AluSx SINE Alu 1 309 0 256 254 0 15 chr9 11098052 11098119 -106764508 - MLT1K LTR MaLR -18 570 505 261 0 0 0 chr9 11098216 11098245 -106764382 + (A)n Simple_repeat Simple_repeat 1 29 0 364 313 61 0 chr9 11099393 11099540 -106763087 - MIR SINE MIR -16 246 91 27 0 0 0 chr9 11099914 11099941 -106762686 + AT_rich Low_complexity Low_complexity 1 27 0 560 287 37 53 chr9 11099955 11100255 -106762372 + LTR16B LTR ERVL 11 305 -159 2316 81 7 3 chr9 11100472 11100782 -106761845 + AluY SINE Alu 1 311 0 279 287 121 67 chr9 11100820 11101448 -106761179 - L1M4 LINE L1 -1088 5058 4397 255 61 0 0 chr9 11102826 11102859 -106759768 + (TG)n Simple_repeat Simple_repeat 2 34 0 358 286 48 24 chr9 11102878 11103004 -106759623 - MIR SINE MIR -78 184 56 360 200 40 0 chr9 11103116 11103191 -106759436 - L2 LINE L2 0 3313 3236 261 372 84 5 chr9 11103334 11103525 -106759102 - L2 LINE L2 -358 2956 2751 1208 251 48 59 chr9 11103916 11104411 -106758216 + MLT1D LTR MaLR 1 490 -15 234 289 109 55 chr9 11104423 11104551 -106758076 + L2 LINE L2 3177 3311 -2 666 373 90 9 chr9 11104559 11105109 -106757518 + L2 LINE L2 2716 3309 -4 849 214 42 33 chr9 11105882 11106008 -106756619 - MER34 LTR ERV1 0 542 412 2012 144 129 28 chr9 11106008 11106396 -106756231 - MSTA LTR MaLR -1 427 1 849 214 42 33 chr9 11106396 11106484 -106756143 - MER34 LTR ERV1 -130 412 326 857 240 72 12 chr9 11106516 11106766 -106755861 - MER34 LTR ERV1 -277 265 1 306 0 0 0 chr9 11107012 11107046 -106755581 + (TTA)n Simple_repeat Simple_repeat 3 36 0 1188 48 0 0 chr9 11107046 11107192 -106755435 - L1PA5 LINE L1 -18 6136 5991 259 341 148 28 chr9 11107466 11107683 -106754944 - MIR SINE MIR -1 261 19 373 313 7 21 chr9 11109136 11109280 -106753347 - MIR SINE MIR -51 211 70 293 301 26 26 chr9 11111021 11111134 -106751493 - MIR SINE MIR -60 202 90 252 302 12 12 chr9 11111754 11111840 -106750787 + (TA)n Simple_repeat Simple_repeat 1 86 0 22 70 0 0 chr9 11113497 11113540 -106749087 + AT_rich Low_complexity Low_complexity 1 43 0 259 309 95 0 chr9 11113642 11113726 -106748901 + MIR SINE MIR 41 132 -76 1363 196 21 25 chr9 11113847 11114132 -106748495 + AluJo SINE Alu 1 284 -28 380 316 26 0 chr9 11115437 11115551 -106747076 - L2 LINE L2 0 3313 3197 331 346 13 6 chr9 11116267 11116423 -106746204 - L1MC4a LINE L1 -472 7336 7180 8373 229 28 82 chr9 11116586 11119294 -106743333 + L1M2 LINE L1 1 2564 -4285 389 348 11 28 chr9 11170050 11170228 -106692399 - MER5A DNA MER1_type -6 183 9 44 46 0 0 chr9 11170375 11170440 -106692187 + AT_rich Low_complexity Low_complexity 1 65 0 382 294 62 56 chr9 11170584 11170744 -106691883 + MIR SINE MIR 28 188 -74 467 355 82 38 chr9 11170922 11171288 -106691339 + L2 LINE L2 2582 2963 -351 275 365 69 13 chr9 11171410 11171569 -106691058 + L2 LINE L2 3104 3271 -1 257 319 0 0 chr9 11172171 11172243 -106690384 - L2 LINE L2 -9 3263 3192 388 300 119 0 chr9 11172881 11173041 -106689586 - MIR SINE MIR -69 193 15 267 333 69 38 chr9 11173448 11173607 -106689020 + L3 LINE CR1 1400 1563 -14 2016 148 0 0 chr9 11175423 11175727 -106686900 + AluSx SINE Alu 1 304 -8 268 132 0 0 chr9 11176942 11176980 -106685647 - THE1B LTR MaLR 0 428 391 620 160 0 0 chr9 11176982 11177088 -106685539 + AluSg/x SINE Alu 203 308 -2 2129 120 37 3 chr9 11177104 11177429 -106685198 - THE1B LTR MaLR -28 336 1 2149 154 76 5 chr9 11177921 11178343 -106684284 - L1MA4 LINE L1 -1 6299 5848 292 379 47 18 chr9 11179328 11179497 -106683130 + LTR16A LTR ERVL 1 174 -276 440 261 18 18 chr9 11179609 11179774 -106682853 + MER115 DNA AcHobo 505 669 -24 1011 159 43 0 chr9 11180871 11181034 -106681593 + AluSg/x SINE Alu 122 291 -21 5999 90 2 18 chr9 11181066 11181951 -106680676 - L1PA7 LINE L1 -846 5300 4430 6342 72 2 0 chr9 11181951 11182786 -106679841 + L1PA7 LINE L1 5317 6153 -1 1714 84 0 4 chr9 11182808 11183034 -106679593 + AluY SINE Alu 27 251 -60 315 300 12 0 chr9 11183534 11183614 -106679013 + MIR SINE MIR 2 82 -180 24 53 0 0 chr9 11183661 11183699 -106678928 + AT_rich Low_complexity Low_complexity 1 38 0 251 300 14 0 chr9 11183906 11183976 -106678651 + MIR SINE MIR 173 243 -19 1825 158 0 16 chr9 11185062 11185373 -106677254 + AluSx SINE Alu 3 308 -4 371 279 67 36 chr9 11185484 11185649 -106676978 + MER5A DNA MER1_type 4 173 -16 341 246 0 123 chr9 11185816 11185938 -106676689 - MER5B DNA MER1_type -71 107 1 1194 244 154 60 chr9 11186002 11186515 -106676112 + MLT1E2 LTR MaLR 1 565 -61 315 0 0 0 chr9 11186515 11186550 -106676077 + (TG)n Simple_repeat Simple_repeat 2 36 0 302 0 26 0 chr9 11186586 11186624 -106676003 + (TG)n Simple_repeat Simple_repeat 2 40 0 896 121 161 15 chr9 11186655 11186854 -106675773 - L1MA3 LINE L1 -1 6304 6077 3826 71 4 0 chr9 11186971 11187478 -106675149 + L1PA7 LINE L1 5643 6151 -3 431 267 141 7 chr9 11187654 11187789 -106674838 - MIR SINE MIR -10 252 100 191 295 85 62 chr9 11187824 11187953 -106674674 - MIR SINE MIR -74 188 57 444 19 0 0 chr9 11188690 11188743 -106673884 + (GA)n Simple_repeat Simple_repeat 2 54 0 5527 40 3 0 chr9 11189289 11189959 -106672668 - L1PA4 LINE L1 -2 6153 5482 9836 32 0 2 chr9 11189959 11191152 -106671475 + L1P LINE L1 3213 4402 -1744 1362 204 11 15 chr9 11191161 11191426 -106671201 - AluJo SINE Alu -22 290 27 264 296 64 54 chr9 11191460 11191740 -106670887 + L1MC/D LINE L1 5607 5889 -1919 416 280 91 88 chr9 11191761 11192125 -106670502 - MER93b LTR ERV1 0 373 9 26 0 0 0 chr9 11192129 11192155 -106670472 + AT_rich Low_complexity Low_complexity 1 26 0 229 295 124 23 chr9 11192259 11192388 -106670239 - MIR SINE MIR -120 142 1 204 226 0 0 chr9 11192490 11192543 -106670084 + A-rich Low_complexity Low_complexity 1 53 0 2666 176 44 21 chr9 11194665 11195453 -106667174 + L1PA16 LINE L1 4699 5506 -660 1288 144 5 5 chr9 11195453 11195661 -106666966 - L1PA16 LINE L1 -283 5883 5676 1020 142 0 0 chr9 11195679 11195834 -106666793 + L1PA16 LINE L1 5495 5649 -517 1581 128 152 3 chr9 11195943 11196266 -106666361 + L1PA16 LINE L1 5813 6179 0 2501 25 0 0 chr9 11196394 11196678 -106665949 + AluY SINE Alu 24 307 -4 313 288 161 0 chr9 11197336 11197454 -106665173 + L2 LINE L2 3136 3272 0 405 54 0 0 chr9 11197859 11197915 -106664712 + (CA)n Simple_repeat Simple_repeat 1 56 0 1803 153 27 7 chr9 11199528 11199823 -106662804 - AluSx SINE Alu -11 301 1 1140 219 124 22 chr9 11200763 11201173 -106661454 - L1ME3A LINE L1 -8 6231 5780 906 114 0 0 chr9 11201174 11201297 -106661330 + AluSc SINE Alu 166 288 -21 231 114 0 0 chr9 11201297 11201332 -106661295 + (GGGAGA)n Simple_repeat Simple_repeat 2 36 0 1341 156 0 41 chr9 11201345 11201589 -106661038 + AluJb SINE Alu 79 312 0 702 266 41 12 chr9 11201589 11201833 -106660794 - L1ME3A LINE L1 -463 5776 5526 523 206 79 52 chr9 11201887 11202176 -106660451 - L1ME3A LINE L1 -681 5552 5253 2879 13 0 0 chr9 11202176 11202490 -106660137 - AluYb8 SINE Alu -4 314 1 523 206 79 52 chr9 11202490 11202571 -106660056 - L1ME3A LINE L1 -980 5253 5176 4042 55 0 2 chr9 11202572 11203080 -106659547 - L1PA7 LINE L1 -12 6142 5636 479 48 0 0 chr9 11203080 11203142 -106659485 + L1P LINE L1 3577 3638 -2508 1253 248 142 41 chr9 11203440 11203932 -106658695 + MLT1F LTR MaLR 1 542 0 987 254 104 73 chr9 11203945 11204917 -106657710 - L1ME3A LINE L1 -1304 4911 3910 21 57 0 0 chr9 11204919 11204954 -106657673 + AT_rich Low_complexity Low_complexity 1 35 0 2002 147 0 0 chr9 11205114 11205421 -106657206 + AluSx SINE Alu 3 309 -3 180 111 0 0 chr9 11205428 11205455 -106657172 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 809 257 172 67 chr9 11205455 11207338 -106655289 - L1MEc LINE L1 -2300 3915 1869 2166 232 106 13 chr9 11207578 11207690 -106654937 - L1MA5 LINE L1 -25 6275 6175 312 27 0 0 chr9 11207690 11207727 -106654900 + (TG)n Simple_repeat Simple_repeat 2 38 0 2166 232 106 13 chr9 11207727 11208803 -106653824 - L1MA5 LINE L1 -125 6175 4955 6712 44 1 1 chr9 11208803 11209624 -106653003 + L1PA5 LINE L1 5332 6152 -2 365 222 14 0 chr9 11209652 11209724 -106652903 - L1MA5 LINE L1 -1179 4967 4895 3020 217 6 42 chr9 11209728 11210534 -106652093 + L1 LINE L1 3595 4371 -1775 2123 128 7 3 chr9 11210864 11211169 -106651458 - AluSg SINE Alu -4 306 1 22 0 0 0 chr9 11211499 11211521 -106651106 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr9 11211720 11211748 -106650879 + AT_rich Low_complexity Low_complexity 1 28 0 353 376 6 19 chr9 11212318 11212480 -106650147 + L3 LINE CR1 1388 1547 -30 1281 304 20 38 chr9 11212486 11212936 -106649691 - LTR33 LTR ERVL -18 503 62 400 392 73 18 chr9 11214355 11214785 -106647842 + L2 LINE L2 2613 3068 -245 348 176 0 0 chr9 11214863 11214931 -106647696 + (TATATG)n Simple_repeat Simple_repeat 4 71 0 207 0 0 0 chr9 11215970 11215993 -106646634 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 501 355 56 4 chr9 11217095 11217393 -106645234 - HERV16 LTR ERVL -2023 2973 2684 41323 62 4 2 chr9 11217412 11223543 -106639084 + L1PA5 LINE L1 11 6147 -7 274 380 52 10 chr9 11223567 11223954 -106638673 - HERV16 LTR ERVL -2819 2666 2264 618 382 16 13 chr9 11224010 11224382 -106638245 - HERV16 LTR ERVL -3487 2277 1905 356 391 37 14 chr9 11224584 11224878 -106637749 - HERV16 LTR ERVL -3412 1584 1284 2290 31 41 34 chr9 11225840 11226133 -106636494 - AluY SINE Alu -16 295 1 496 329 43 29 chr9 11226407 11226684 -106635943 - LTR16C LTR ERVL -18 473 193 319 322 85 43 chr9 11226880 11227829 -106634798 + L1M4 LINE L1 3553 4541 -1605 * 4423 47 0 9 chr9 11227815 11227829 -106634798 + L1PA4 LINE L1 5352 5365 -790 2181 35 0 0 chr9 11227829 11228088 -106634539 - L1PA5 LINE L1 -1 6153 5895 4423 47 0 9 chr9 11228088 11228622 -106634005 + L1PA5 LINE L1 5365 5895 -260 248 270 48 24 chr9 11228619 11228745 -106633882 + L1M4 LINE L1 4532 4660 -1486 * 5897 211 110 36 chr9 11229318 11230826 -106631801 + MER52A LTR ERV1 136 1755 0 237 265 15 0 chr9 11230835 11230903 -106631724 + L1M LINE L1 5349 5417 -747 3753 214 34 70 chr9 11231157 11232536 -106630091 - L1MB1 LINE L1 -1 5991 4611 389 207 12 0 chr9 11232536 11232618 -106630009 - MER52A LTR ERV1 -460 1295 1213 3753 214 34 70 chr9 11232618 11232952 -106629675 - L1MB1 LINE L1 -1381 4611 4266 2131 225 19 73 chr9 11232963 11233540 -106629087 - MLT2B3 LTR ERVL -8 546 1 16042 163 22 23 chr9 11233542 11236121 -106626506 - HERVL-B3 LTR ERVL -2 5652 3071 4467 64 0 10 chr9 11236121 11236699 -106625928 - L1PA7 LINE L1 0 6154 5583 16042 163 22 23 chr9 11236699 11236802 -106625825 - HERVL-B3 LTR ERVL -2583 3071 2969 1833 144 27 56 chr9 11236802 11237177 -106625450 + THE1B LTR MaLR 1 364 0 16042 163 22 23 chr9 11237177 11237509 -106625118 - HERVL-B3 LTR ERVL -2685 2969 2548 3052 256 78 46 chr9 11237515 11237934 -106624693 - L1MB1 LINE L1 -2813 3157 2753 2149 109 0 17 chr9 11237934 11238249 -106624378 - AluSx SINE Alu 0 312 1 3052 256 78 46 chr9 11238249 11239056 -106623571 - L1MB1 LINE L1 -3217 2753 1973 6584 155 23 17 chr9 11239056 11240275 -106622352 + Tigger3b DNA MER2_type 5 1230 -1 3052 256 78 46 chr9 11240275 11242032 -106620595 - L1MB1 LINE L1 -3997 1973 444 876 314 81 14 chr9 11242056 11242403 -106620224 - L1MB1 LINE L1 -5520 371 2 1532 193 4 0 chr9 11242409 11242673 -106619954 - AluJo SINE Alu -12 300 36 24 53 0 0 chr9 11242887 11242925 -106619702 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr9 11242962 11242985 -106619642 + AT_rich Low_complexity Low_complexity 1 23 0 262 312 48 64 chr9 11243152 11243402 -106619225 - HERVL LTR ERVL -4383 1271 1026 22 0 0 0 chr9 11243467 11243489 -106619138 + AT_rich Low_complexity Low_complexity 1 22 0 325 361 68 21 chr9 11243879 11244070 -106618557 - L2 LINE L2 -469 2845 2646 1537 204 37 30 chr9 11244504 11244935 -106617692 + L1MB2 LINE L1 5738 6171 0 430 239 165 37 chr9 11245191 11245379 -106617248 - L1ME2 LINE L1 0 6164 5953 1738 184 7 3 chr9 11245608 11245907 -106616720 + AluJb SINE Alu 13 312 0 276 100 0 0 chr9 11245918 11245958 -106616669 + (GAAA)n Simple_repeat Simple_repeat 1 40 0 224 350 25 67 chr9 11245984 11246104 -106616523 - MER5A DNA MER1_type 0 189 75 361 282 98 23 chr9 11246160 11246334 -106616293 - MER5A DNA MER1_type 0 189 3 207 133 0 0 chr9 11247336 11247381 -106615246 + (A)n Simple_repeat Simple_repeat 1 45 0 1764 173 10 10 chr9 11248322 11248634 -106613993 - AluJb SINE Alu 0 312 1 1943 147 53 11 chr9 11249216 11249576 -106613051 + THE1C LTR MaLR 1 375 0 294 29 0 0 chr9 11251924 11251959 -106610668 + (CA)n Simple_repeat Simple_repeat 2 36 0 284 331 127 0 chr9 11252176 11252318 -106610309 + L2 LINE L2 2696 2855 -459 303 224 60 43 chr9 11253420 11253536 -106609091 + L1M4 LINE L1 2816 2933 -3213 1101 253 29 3 chr9 11253552 11253864 -106608763 - L1 LINE L1 -3318 2828 2509 525 248 21 0 chr9 11253871 11254012 -106608615 - L1M4 LINE L1 -1549 4597 4454 * 5690 121 18 14 chr9 11254008 11254281 -106608346 + L1PA16 LINE L1 5215 5485 -681 450 0 0 0 chr9 11254281 11254331 -106608296 + (TA)n Simple_repeat Simple_repeat 1 50 0 5690 121 18 14 chr9 11254331 11254624 -106608003 + L1PA16 LINE L1 5485 5775 -391 1320 195 31 69 chr9 11254624 11254942 -106607685 + AluJb SINE Alu 1 306 -6 5690 121 18 14 chr9 11254942 11255317 -106607310 + L1PA16 LINE L1 5775 6154 -12 189 74 0 0 chr9 11255430 11255457 -106607170 + (CA)n Simple_repeat Simple_repeat 2 28 0 255 200 0 0 chr9 11255501 11255556 -106607071 - L1MC4 LINE L1 -1340 6702 6648 1857 225 34 135 chr9 11255580 11256047 -106606580 - MLT2B3 LTR ERVL -26 498 75 431 143 0 0 chr9 11256143 11256213 -106606414 - MLT2B3 LTR ERVL -483 71 2 1391 237 56 31 chr9 11256218 11256737 -106605890 - L1M4 LINE L1 -1701 4445 3914 689 231 19 61 chr9 11256791 11256908 -106605719 + L1 LINE L1 2626 2732 -3414 1638 199 7 7 chr9 11256908 11257195 -106605432 - AluJb SINE Alu -23 289 3 689 231 19 61 chr9 11257195 11257289 -106605338 + L1 LINE L1 2732 2828 -3318 189 74 0 0 chr9 11257330 11257357 -106605270 + (CA)n Simple_repeat Simple_repeat 2 28 0 1654 154 96 9 chr9 11257388 11257733 -106604894 - THE1C LTR MaLR 0 375 1 8378 134 106 6 chr9 11257736 11259158 -106603469 - THE1C-int LTR MaLR -17 1563 1 1603 141 73 62 chr9 11259158 11259527 -106603100 - THE1C LTR MaLR 0 375 3 658 188 34 20 chr9 11259529 11259637 -106602990 - L1M4 LINE L1 -2289 3857 3745 2889 210 9 4 chr9 11259637 11260184 -106602443 - MER44D DNA MER2_type 0 605 1 658 188 34 20 chr9 11260184 11260224 -106602403 - L1M4 LINE L1 -2401 3745 3707 1750 24 9 0 chr9 11261182 11261393 -106601234 - L1PA4 LINE L1 0 6155 5943 961 242 50 0 chr9 11261433 11261652 -106600975 + MIR SINE MIR 3 232 -30 510 361 38 0 chr9 11261661 11261844 -106600783 + LTR16A LTR ERVL 5 194 -256 318 234 65 56 chr9 11262907 11263014 -106599613 + L3b LINE CR1 1329 1436 -147 2147 107 0 3 chr9 11263054 11263343 -106599284 + AluSq SINE Alu 1 288 -25 358 258 0 21 chr9 11263346 11263439 -106599188 + L1MC4 LINE L1 6614 6704 -1338 441 0 0 0 chr9 11263497 11263546 -106599081 + (TG)n Simple_repeat Simple_repeat 2 50 0 23 68 0 0 chr9 11263678 11263722 -106598905 + AT_rich Low_complexity Low_complexity 1 44 0 1909 146 44 0 chr9 11263973 11264268 -106598359 - AluSp SINE Alu -5 308 1 3281 99 18 16 chr9 11264309 11264802 -106597825 - L1PA14 LINE L1 -4 6157 5664 13948 214 22 20 chr9 11264803 11267234 -106595393 - L1P LINE L1 -882 5264 2823 2857 10 0 0 chr9 11267234 11267545 -106595082 - AluY SINE Alu 0 311 1 13948 214 22 20 chr9 11267545 11268423 -106594204 - L1P LINE L1 -3323 2823 1948 201 250 25 0 chr9 11268814 11268854 -106593773 + MIR3 SINE MIR 114 154 -54 23 0 0 0 chr9 11269725 11269748 -106592879 + AT_rich Low_complexity Low_complexity 1 23 0 2184 114 3 3 chr9 11269938 11270237 -106592390 - AluSq SINE Alu -12 301 3 198 385 31 43 chr9 11270310 11270471 -106592156 - L2 LINE L2 0 3272 3114 235 368 39 44 chr9 11270939 11271121 -106591506 + MIR SINE MIR 70 250 -12 1449 160 53 153 chr9 11273348 11273899 -106588728 + LTR54B LTR ERV1 1 496 -2 4897 124 28 35 chr9 11274902 11275883 -106586744 + pTR5 LTR ERV1 741 2025 -413 301 276 10 0 chr9 11275883 11275981 -106586646 + LTR30 LTR ERV1 544 642 -80 1233 163 34 5 chr9 11275988 11276197 -106586430 + pTR5 LTR ERV1 175 389 -2049 2173 91 0 30 chr9 11276328 11276626 -106586001 + AluY SINE Alu 5 293 -18 6708 140 33 25 chr9 11277533 11278287 -106584340 + Tigger3b DNA MER2_type 1 769 -2259 2235 92 14 0 chr9 11278287 11278579 -106584048 - AluY SINE Alu -13 298 3 6708 140 33 25 chr9 11278579 11279046 -106583581 + Tigger3b DNA MER2_type 769 1231 0 314 297 26 58 chr9 11279298 11279453 -106583174 - MIR SINE MIR -1 261 112 248 139 93 0 chr9 11279502 11279545 -106583082 + MLT1G1 LTR MaLR 1 47 -548 518 198 85 41 chr9 11279565 11279814 -106582813 + MLT1G1 LTR MaLR 194 567 0 282 329 33 26 chr9 11279814 11279966 -106582661 + MLT1G1-int LTR MaLR 1 153 -1218 3991 250 54 64 chr9 11280024 11281205 -106581422 - L1MEc LINE L1 -853 5362 4207 1799 126 33 0 chr9 11281205 11281475 -106581152 - AluSg SINE Alu -6 304 26 3991 250 54 64 chr9 11281475 11282251 -106580376 - L1MEc LINE L1 -2008 4207 3425 1837 255 90 13 chr9 11282252 11282774 -106579853 - MLT1F1 LTR MaLR -5 562 1 2446 265 79 15 chr9 11282807 11282948 -106579679 - L1MEc LINE L1 -2827 3388 3257 1213 234 31 0 chr9 11282948 11283238 -106579389 - AluJo SINE Alu -13 299 1 2446 265 79 15 chr9 11283238 11284725 -106577902 - L1MEc LINE L1 -2958 3257 1703 348 0 58 0 chr9 11284804 11284856 -106577771 + (TTA)n Simple_repeat Simple_repeat 3 57 0 7463 21 3 0 chr9 11284856 11286275 -106576352 - L1PA3 LINE L1 -18 6137 4708 685 245 83 0 chr9 11286396 11286649 -106575978 - L1MC3 LINE L1 -1 7784 7511 21138 29 2 0 chr9 11288325 11290884 -106571743 - L1PA3 LINE L1 -784 5362 2800 3299 20 0 0 chr9 11290884 11291661 -106570966 + L1PA3 LINE L1 5354 6167 0 231 54 0 27 chr9 11291661 11291698 -106570929 + (TAAAA)n Simple_repeat Simple_repeat 5 180 0 290 291 58 12 chr9 11292070 11292156 -106570471 + MIR SINE MIR 19 108 -154 808 213 6 22 chr9 11292459 11292642 -106569985 + AluJb SINE Alu 132 311 -1 287 227 13 0 chr9 11293250 11293325 -106569302 + (TA)n Simple_repeat Simple_repeat 2 77 0 346 273 84 0 chr9 11294495 11294638 -106567989 + LTR16A1 LTR ERVL 299 453 -4 277 272 114 26 chr9 11294726 11294840 -106567787 + HAL1 LINE L1 258 381 -2126 707 296 100 34 chr9 11295185 11295863 -106566764 + HAL1 LINE L1 817 1539 -968 384 313 40 7 chr9 11295885 11296035 -106566592 + HAL1 LINE L1 1619 1773 -734 656 288 123 48 chr9 11296037 11296544 -106566083 - L2 LINE L2 -98 3215 2648 3219 43 0 0 chr9 11296544 11296939 -106565688 + L1PA4 LINE L1 5758 6152 -3 656 288 123 48 chr9 11296939 11296975 -106565652 - L2 LINE L2 -665 2648 2616 1413 153 16 28 chr9 11297437 11297686 -106564941 - L1PB3 LINE L1 0 6154 5909 211 220 138 88 chr9 11298517 11298676 -106563951 - L2 LINE L2 -37 3276 3110 23 0 0 0 chr9 11298793 11298816 -106563811 + AT_rich Low_complexity Low_complexity 1 23 0 1850 262 82 39 chr9 11299090 11300534 -106562093 + L1ME LINE L1 10 1505 -4575 306 286 165 9 chr9 11300534 11300758 -106561869 + L1ME LINE L1 3522 3780 -2300 2127 255 71 38 chr9 11300869 11302139 -106560488 + L1ME LINE L1 4298 5600 -500 28 29 0 0 chr9 11305144 11305179 -106557448 + AT_rich Low_complexity Low_complexity 1 35 0 269 235 12 0 chr9 11305466 11305551 -106557076 + (CATA)n Simple_repeat Simple_repeat 3 88 0 332 278 111 12 chr9 11307397 11307528 -106555099 + MIR SINE MIR 11 151 -57 5548 116 8 0 chr9 11307532 11308359 -106554268 + L1PA13 LINE L1 5310 6143 -20 29 47 0 0 chr9 11308402 11308445 -106554182 + AT_rich Low_complexity Low_complexity 1 43 0 183 42 0 0 chr9 11308699 11308723 -106553904 + (CA)n Simple_repeat Simple_repeat 1 24 0 394 243 98 75 chr9 11309290 11309463 -106553164 + MER5B DNA MER1_type 2 178 0 262 257 14 0 chr9 11309571 11309645 -106552982 + (CA)n Simple_repeat Simple_repeat 1 75 0 2602 39 0 7 chr9 11309709 11310017 -106552610 + AluY SINE Alu 1 306 -5 199 286 57 29 chr9 11310213 11310283 -106552344 + MIR SINE MIR 82 153 -55 1643 147 55 68 chr9 11310762 11311142 -106551485 - THE1C LTR MaLR 0 375 1 9533 126 63 6 chr9 11311142 11312637 -106549990 - THE1C-int LTR MaLR 0 1580 1 1510 167 66 74 chr9 11312637 11313015 -106549612 - THE1C LTR MaLR 0 375 1 26 0 0 0 chr9 11313137 11313163 -106549464 + AT_rich Low_complexity Low_complexity 1 26 0 34 42 0 0 chr9 11313467 11313515 -106549112 + AT_rich Low_complexity Low_complexity 1 48 0 261 297 66 0 chr9 11313625 11313716 -106548911 - MIR SINE MIR -62 200 104 22 0 0 0 chr9 11314864 11314886 -106547741 + AT_rich Low_complexity Low_complexity 1 22 0 664 295 71 5 chr9 11315179 11315403 -106547224 + MIR SINE MIR 13 251 -11 416 226 81 24 chr9 11315530 11315654 -106546973 + L2 LINE L2 3183 3313 0 183 304 170 7 chr9 11315975 11316110 -106546517 - MIR SINE MIR -11 251 95 2131 160 38 30 chr9 11316125 11316674 -106545953 - MLT2A2 LTR ERVL 0 554 1 211 304 14 29 chr9 11317120 11317189 -106545438 - L2 LINE L2 -1 3312 3245 1105 221 0 32 chr9 11317840 11318093 -106544534 + L1MC3 LINE L1 6548 6792 -993 241 292 135 22 chr9 11318127 11318216 -106544411 + MIR SINE MIR 32 130 -78 2071 101 6 38 chr9 11318886 11319204 -106543423 - AluSp SINE Alu -1 312 5 2487 77 0 0 chr9 11319311 11319621 -106543006 + AluY SINE Alu 1 310 -1 180 111 0 0 chr9 11320322 11320349 -106542278 + (T)n Simple_repeat Simple_repeat 1 27 0 567 216 69 78 chr9 11322501 11322807 -106539820 - LTR37A LTR ERV1 -12 414 112 598 284 85 6 chr9 11323533 11323709 -106538918 + MIR SINE MIR 70 259 -3 2353 94 139 5 chr9 11324100 11324495 -106538132 + LTR7 LTR ERV1 1 448 -2 14533 111 6 26 chr9 11324497 11327307 -106535320 + HERVH LTR ERV1 1 2995 -4718 877 160 7 0 chr9 11327286 11327436 -106535191 + HERVH LTR ERV1 3140 3290 -4423 * 1598 121 12 0 chr9 11327435 11327675 -106534952 + HERVH LTR ERV1 3500 3742 -3971 7600 126 13 2 chr9 11327682 11328837 -106533790 + HERVH LTR ERV1 3993 5149 -2564 1418 125 19 0 chr9 11328838 11329054 -106533573 + HERVH LTR ERV1 5600 5819 -1894 2374 96 48 13 chr9 11329054 11329431 -106533196 + HERVH LTR ERV1 7324 7713 0 2241 96 152 18 chr9 11329431 11329826 -106532801 + LTR7 LTR ERV1 1 448 -2 635 77 0 22 chr9 11329826 11329917 -106532710 + LTR7 LTR ERV1 354 442 -8 2326 91 0 16 chr9 11330136 11330445 -106532182 - AluY SINE Alu -6 305 2 1540 168 44 24 chr9 11331491 11331789 -106530838 + AluJb SINE Alu 1 304 -8 617 186 8 0 chr9 11332095 11332219 -106530408 + L1MB4 LINE L1 6050 6174 -6 2037 47 3 10 chr9 11332309 11332320 -106530307 + L1PA4 LINE L1 5668 5678 -496 217 49 0 49 chr9 11332320 11332361 -106530266 + (TTTTA)n Simple_repeat Simple_repeat 1 39 0 2037 47 3 10 chr9 11332361 11332642 -106529985 + L1PA4 LINE L1 5678 5954 -220 270 0 0 0 chr9 11332935 11332965 -106529662 + (TG)n Simple_repeat Simple_repeat 1 30 0 238 265 0 0 chr9 11334316 11334365 -106528262 - L2 LINE L2 -5 3267 3219 3356 129 39 2 chr9 11334807 11335341 -106527286 + MER41C LTR ERV1 1 554 0 905 203 144 13 chr9 11335631 11335867 -106526760 + AluYa8 SINE Alu 44 310 0 283 340 10 0 chr9 11336982 11337079 -106525548 - L2 LINE L2 -19 3294 3197 2272 129 25 8 chr9 11337525 11337881 -106524746 - THE1B LTR MaLR 0 364 3 10856 108 1 32 chr9 11337887 11339510 -106523117 - THE1B-int LTR MaLR -4 1576 5 1174 146 0 16 chr9 11339511 11339696 -106522931 - THE1B LTR MaLR -6 358 177 1202 211 61 22 chr9 11339920 11340232 -106522395 + MLT2B1 LTR ERVL 1 324 -196 1484 135 139 0 chr9 11340235 11340487 -106522140 + Ricksha DNA DNA 3 289 -2957 * 7532 144 56 7 chr9 11340485 11341815 -106520812 + Ricksha DNA DNA 1821 3223 -39 779 167 68 123 chr9 11341815 11342066 -106520561 + MLT2B1 LTR ERVL 284 520 0 2974 231 51 26 chr9 11342886 11343686 -106518941 - MER99 DNA DNA -4 824 5 323 103 0 17 chr9 11343930 11343988 -106518639 + (GA)n Simple_repeat Simple_repeat 1 57 0 403 333 62 1 chr9 11344780 11344963 -106517664 - MIR SINE MIR -39 169 19 3212 206 28 84 chr9 11346200 11347226 -106515401 - LTR5 LTR ERVK 0 969 1 339 300 112 24 chr9 11348128 11348415 -106514212 - Tigger8 DNA MER2_type -118 548 237 2395 39 0 0 chr9 11348813 11349093 -106513534 + L1P LINE L1 4095 4374 -1772 688 293 38 9 chr9 11349160 11349372 -106513255 + MIR SINE MIR 10 227 -35 21 0 0 0 chr9 11349372 11349393 -106513234 + AT_rich Low_complexity Low_complexity 1 21 0 351 253 119 36 chr9 11349745 11350040 -106512587 - MLT1G LTR MaLR 0 549 226 2136 139 0 13 chr9 11350238 11350547 -106512080 - AluSx SINE Alu -7 305 1 467 333 73 18 chr9 11351103 11351322 -106511305 + MIR SINE MIR 15 245 -17 682 296 29 15 chr9 11351348 11351554 -106511073 + MLT1K LTR MaLR 373 581 -7 371 367 28 17 chr9 11351565 11351742 -106510885 - MER5A DNA MER1_type -10 179 1 953 181 15 10 chr9 11351902 11352101 -106510526 - L1MA6 LINE L1 -2 6298 6099 246 261 81 54 chr9 11353428 11353539 -106509088 - MIR3 SINE MIR -40 168 55 252 253 107 0 chr9 11353664 11353739 -106508888 + Charlie8 DNA MER1_type 99 181 -2236 830 251 120 43 chr9 11353924 11353977 -106508650 - MLT1I LTR MaLR 0 409 362 2184 110 47 65 chr9 11353977 11354359 -106508268 + THE1C LTR MaLR 1 375 0 830 251 120 43 chr9 11354359 11354679 -106507948 - MLT1I LTR MaLR -47 362 7 236 314 154 0 chr9 11354860 11354966 -106507661 + MIR SINE MIR 46 164 -69 1378 199 29 19 chr9 11355005 11355317 -106507310 - MLT1A1 LTR MaLR -50 315 1 371 323 19 38 chr9 11355456 11355614 -106507013 + MIR SINE MIR 78 232 -30 276 188 129 47 chr9 11355721 11355806 -106506821 - MLT1A1 LTR MaLR -188 186 95 2317 95 3 13 chr9 11356437 11356752 -106505875 - AluSx SINE Alu 0 312 1 327 175 16 0 chr9 11356754 11356817 -106505810 - MIR SINE MIR -113 149 86 2831 102 3 0 chr9 11356881 11357235 -106505392 + THE1A LTR MaLR 1 355 0 12104 107 3 1 chr9 11357235 11358811 -106503816 + THE1A-int LTR MaLR 1 1579 -1 2866 99 3 0 chr9 11358812 11359166 -106503461 + THE1A LTR MaLR 1 355 0 189 387 0 43 chr9 11359257 11359350 -106503277 - MIR SINE MIR -90 118 30 2606 158 59 9 chr9 11360751 11361193 -106501434 + MLT2C2 LTR ERVL 1 464 0 516 359 11 6 chr9 11361249 11361430 -106501197 - MIR SINE MIR -70 192 11 404 295 45 0 chr9 11363459 11363571 -106499056 - MER5A DNA MER1_type 0 189 73 4689 74 16 19 chr9 11364084 11365114 -106497513 + MER11A LTR ERVK 1 1266 0 1913 166 0 13 chr9 11365114 11365422 -106497205 - AluJb SINE Alu -8 304 1 22 0 0 0 chr9 11365422 11365444 -106497183 + AT_rich Low_complexity Low_complexity 1 22 0 2260 92 0 0 chr9 11366299 11366583 -106496044 + AluSx SINE Alu 5 288 -24 23 54 0 0 chr9 11368428 11368465 -106494162 + AT_rich Low_complexity Low_complexity 1 37 0 606 203 15 30 chr9 11368821 11368954 -106493673 + FLAM_A SINE Alu 3 133 0 1490 162 26 0 chr9 11369525 11369754 -106492873 - MER46A DNA MER2_type 0 236 2 2281 102 0 0 chr9 11369755 11370048 -106492579 + AluSg SINE Alu 1 293 -17 250 143 20 41 chr9 11370100 11370149 -106492478 - AluSp SINE Alu -135 168 121 2312 92 3 0 chr9 11370251 11370556 -106492071 + AluY SINE Alu 1 306 -5 476 305 171 61 chr9 11371007 11371788 -106490839 + L2 LINE L2 2228 3154 -118 1271 154 288 3 chr9 11371788 11372073 -106490554 + MER47A DNA MER2_type 1 366 0 476 305 171 61 chr9 11372073 11372196 -106490431 + L2 LINE L2 3154 3262 -10 928 196 138 45 chr9 11372634 11372728 -106489899 - AluJo SINE Alu -67 245 161 2199 99 24 0 chr9 11372728 11373020 -106489607 - AluSq SINE Alu -14 299 1 928 196 138 45 chr9 11373020 11373149 -106489478 - AluJo SINE Alu -151 161 1 22 35 0 0 chr9 11373495 11373524 -106489103 + AT_rich Low_complexity Low_complexity 1 29 0 2190 95 3 10 chr9 11374212 11374508 -106488119 - AluSp SINE Alu -19 294 1 3293 60 2 2 chr9 11375071 11375470 -106487157 + L1PA6 LINE L1 5754 6152 -2 26 0 0 0 chr9 11375576 11375602 -106487025 + AT_rich Low_complexity Low_complexity 1 26 0 277 319 163 0 chr9 11377393 11377534 -106485093 - MIR SINE MIR -79 183 20 463 180 40 30 chr9 11377606 11377706 -106484921 + MER5A DNA MER1_type 6 106 -83 851 220 75 0 chr9 11377903 11378089 -106484538 + MER3 DNA MER1_type 9 208 -1 263 180 0 0 chr9 11379733 11379783 -106482844 + AluSc SINE Alu 247 296 -3 1044 172 108 135 chr9 11379827 11380123 -106482504 + AluJb SINE Alu 3 290 -12 455 174 47 23 chr9 11380255 11380341 -106482286 + AluJ/FLAM SINE Alu 2 89 -223 1332 136 5 5 chr9 11380350 11380556 -106482071 - AluJb SINE Alu -106 206 1 584 157 0 0 chr9 11380611 11380694 -106481933 - AluSg/x SINE Alu -23 286 204 2190 80 3 0 chr9 11380776 11381065 -106481562 - AluSg SINE Alu -20 290 1 453 236 0 0 chr9 11381980 11382086 -106480541 + FRAM SINE Alu 63 168 -8 928 100 21 29 chr9 11382142 11382282 -106480345 + AluJb SINE Alu 22 160 -152 700 181 8 15 chr9 11382288 11382421 -106480206 - FLAM_C SINE Alu 0 133 2 2020 99 11 0 chr9 11382456 11382728 -106479899 + AluSx SINE Alu 3 277 -35 1059 215 15 5 chr9 11382728 11382933 -106479694 + AluJo SINE Alu 76 282 -30 2081 113 0 7 chr9 11382972 11383281 -106479346 - AluSg SINE Alu 0 307 1 217 119 48 0 chr9 11383937 11383979 -106478648 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 1267 134 0 46 chr9 11383992 11384208 -106478419 - AluSq SINE Alu -13 300 95 473 113 16 0 chr9 11384311 11384373 -106478254 + AluSg/x SINE Alu 114 176 -134 1625 170 37 0 chr9 11385140 11385434 -106477193 + AluSx SINE Alu 2 305 0 1725 160 0 17 chr9 11385631 11385918 -106476709 - AluSx SINE Alu -30 282 1 1788 127 48 4 chr9 11386125 11386393 -106476234 - AluSc SINE Alu -19 290 11 2046 147 0 0 chr9 11386675 11386975 -106475652 - AluSx SINE Alu -12 300 1 1819 101 8 0 chr9 11387143 11387381 -106475246 + AluSq SINE Alu 1 240 -73 481 303 41 74 chr9 11387764 11388008 -106474619 + MLT1J LTR MaLR 216 451 -60 2148 101 0 0 chr9 11388131 11388407 -106474220 + AluY SINE Alu 1 276 -35 192 40 0 0 chr9 11388411 11388436 -106474191 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 41173 70 3 4 chr9 11388454 11394598 -106468029 + L1PA4 LINE L1 11 6154 -1 293 210 61 31 chr9 11394730 11394862 -106467765 - L1MC4a LINE L1 -1289 6507 6382 2783 279 77 58 chr9 11394871 11395299 -106467328 + L1MCc LINE L1 19 438 -6077 186 43 0 0 chr9 11395299 11395322 -106467305 + (GA)n Simple_repeat Simple_repeat 2 24 0 2783 279 77 58 chr9 11395322 11396473 -106466154 + L1MCc LINE L1 438 1628 -4887 441 274 124 43 chr9 11396537 11396723 -106465904 - MLT1H1 LTR MaLR -348 207 7 25 31 0 0 chr9 11397125 11397157 -106465470 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr9 11397598 11397626 -106465001 + AT_rich Low_complexity Low_complexity 1 28 0 799 339 40 49 chr9 11397669 11398097 -106464530 + MER45C DNA AcHobo 1 424 -529 450 300 58 0 chr9 11398094 11398284 -106464343 + MER45B DNA AcHobo 768 968 -72 * 502 211 0 0 chr9 11398286 11398381 -106464246 - MLT1E2 LTR MaLR -480 146 52 2328 103 66 6 chr9 11399032 11399380 -106463247 - MER51B LTR ERV1 -8 369 1 438 129 0 0 chr9 11399382 11399444 -106463183 - MER51B-int LTR ERV1 -1 7815 7754 21 57 0 0 chr9 11399640 11399675 -106462952 + AT_rich Low_complexity Low_complexity 1 35 0 231 133 0 0 chr9 11399675 11399720 -106462907 + (TA)n Simple_repeat Simple_repeat 2 46 0 19360 91 9 2 chr9 11404565 11408122 -106454505 - L1PA7 LINE L1 -2 6152 2561 2136 126 0 0 chr9 11409428 11409713 -106452914 + AluSx SINE Alu 1 285 -27 21 0 0 0 chr9 11409713 11409734 -106452893 + AT_rich Low_complexity Low_complexity 1 21 0 297 233 0 0 chr9 11410045 11410105 -106452522 - MER33 DNA MER1_type -222 102 43 2029 135 0 14 chr9 11410256 11410553 -106452074 - AluSp SINE Alu -20 293 1 2107 134 7 0 chr9 11411047 11411352 -106451275 - AluSx SINE Alu -5 307 1 2183 138 0 0 chr9 11411846 11412151 -106450476 - AluSg SINE Alu -5 305 1 1614 146 27 8 chr9 11413170 11413430 -106449197 - AluSq SINE Alu 0 313 49 412 187 7 29 chr9 11413809 11413902 -106448725 + AluJ/FLAM SINE Alu 1 62 -240 366 282 0 0 chr9 11413954 11414124 -106448503 + (GTCTG)n Simple_repeat Simple_repeat 3 172 0 285 283 0 0 chr9 11414156 11414308 -106448319 + (GTCTG)n Simple_repeat Simple_repeat 4 155 0 402 297 0 0 chr9 11414311 11414429 -106448198 + (CAGTC)n Simple_repeat Simple_repeat 3 120 0 330 288 0 0 chr9 11414433 11414593 -106448034 + (GTCTG)n Simple_repeat Simple_repeat 4 163 0 255 301 0 0 chr9 11414594 11414667 -106447960 + (CAGTC)n Simple_repeat Simple_repeat 1 73 0 212 211 14 0 chr9 11414671 11414742 -106447885 + (GTCTG)n Simple_repeat Simple_repeat 4 75 0 219 224 0 0 chr9 11414743 11414792 -106447835 + (CAGTC)n Simple_repeat Simple_repeat 1 49 0 300 270 0 0 chr9 11414804 11414930 -106447697 + (CAGTC)n Simple_repeat Simple_repeat 3 128 0 303 292 0 0 chr9 11415019 11415187 -106447440 + (GTCTG)n Simple_repeat Simple_repeat 3 170 0 192 287 0 0 chr9 11415205 11415306 -106447321 + (GTCTG)n Simple_repeat Simple_repeat 5 105 0 1517 163 31 7 chr9 11415347 11415641 -106446986 - AluSq SINE Alu -12 301 1 310 308 128 15 chr9 11415730 11416191 -106446436 + L1ME3A LINE L1 4263 4775 -1371 21 0 0 0 chr9 11416459 11416480 -106446147 + AT_rich Low_complexity Low_complexity 1 21 0 642 194 129 48 chr9 11416492 11416740 -106445887 - MER33 DNA MER1_type 0 324 57 632 307 88 34 chr9 11416915 11417481 -106445146 + L1ME3A LINE L1 5264 5860 -310 387 140 0 0 chr9 11417565 11417622 -106445005 + AluJ/FLAM SINE Alu 46 102 -200 1495 150 9 4 chr9 11417622 11417855 -106444772 - AluSp SINE Alu -79 234 1 1723 196 0 0 chr9 11418711 11419007 -106443620 - AluJb SINE Alu -16 296 1 3367 215 66 27 chr9 11419179 11419268 -106443359 + L1MC3 LINE L1 6366 6450 -1335 1957 159 0 0 chr9 11419268 11419570 -106443057 - AluSg SINE Alu -8 302 1 3367 215 66 27 chr9 11419570 11420407 -106442220 + L1MC3 LINE L1 6450 7328 -457 424 233 188 7 chr9 11421321 11421460 -106441167 + MER5A DNA MER1_type 1 184 -5 288 0 0 0 chr9 11422309 11422341 -106440286 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 260 266 13 38 chr9 11423853 11423932 -106438695 - MIR SINE MIR -30 232 156 191 362 79 31 chr9 11424526 11424653 -106437974 + MIR SINE MIR 19 151 -57 * 610 219 62 12 chr9 11424646 11424806 -106437821 + MIR SINE MIR 95 262 0 843 202 26 26 chr9 11424815 11425008 -106437619 - MER46A DNA MER2_type -1 235 43 1075 158 3 0 chr9 11425391 11426242 -106436385 + ALR/Alpha Satellite centromeric 1 853 -22 1264 123 3 1 chr9 11426342 11431673 -106430954 + ALR/Alpha Satellite centromeric 1 5338 0 1263 127 3 7 chr9 11431685 11434575 -106428052 + ALR/Alpha Satellite centromeric 1 2877 -48 4433 86 21 6 chr9 11434575 11435592 -106427035 + MER11A LTR ERVK 1 1266 0 1251 125 4 2 chr9 11435592 11442542 -106420085 + ALR/Alpha Satellite centromeric 1 6961 -54 5109 10 2 2 chr9 11444156 11444740 -106417887 - L1PA2 LINE L1 -94 6061 5478 196 273 26 39 chr9 11445407 11445484 -106417143 + L2 LINE L2 3031 3106 -207 22 56 0 0 chr9 11445489 11445525 -106417102 + AT_rich Low_complexity Low_complexity 1 36 0 1628 177 11 11 chr9 11445527 11445804 -106416823 - AluJb SINE Alu -25 287 11 596 280 48 43 chr9 11445819 11446026 -106416601 + L2 LINE L2 3101 3308 -5 187 363 77 0 chr9 11446027 11446118 -106416509 + MIR SINE MIR 165 262 0 290 241 175 51 chr9 11446748 11446885 -106415742 - MIR3 SINE MIR -26 182 29 1131 156 10 2 chr9 11447441 11451090 -106411537 + ALR/Alpha Satellite centromeric 1 3678 -4 1442 72 97 5 chr9 11451091 11451298 -106411329 - AluY SINE Alu -19 292 67 1212 136 5 8 chr9 11451304 11453404 -106409223 + ALR/Alpha Satellite centromeric 1 2094 -66 1163 138 6 7 chr9 11453535 11457432 -106405195 + ALR/Alpha Satellite centromeric 1 3892 -59 21 0 0 0 chr9 11457559 11457580 -106405047 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 11457948 11457969 -106404658 + AT_rich Low_complexity Low_complexity 1 21 0 224 80 120 0 chr9 11457980 11458030 -106404597 + (TTATA)n Simple_repeat Simple_repeat 5 60 0 434 354 62 10 chr9 11458389 11458598 -106404029 + MIR SINE MIR 40 259 -3 2234 144 23 0 chr9 11459631 11459984 -106402643 + THE1B LTR MaLR 1 361 -3 9209 95 24 9 chr9 11459984 11461158 -106401469 + HERVL LTR ERVL 3319 4514 -1140 2324 87 0 0 chr9 11461158 11461458 -106401169 + AluY SINE Alu 1 300 -11 9209 95 24 9 chr9 11461458 11461554 -106401073 + HERVL LTR ERVL 4514 4607 -1047 3036 50 3 0 chr9 11461657 11462035 -106400592 + L1PA4 LINE L1 5774 6152 -3 367 320 82 24 chr9 11462423 11462597 -106400030 + MIR3 SINE MIR 20 207 -1 1843 157 17 3 chr9 11462611 11462905 -106399722 + AluSp SINE Alu 2 299 -14 952 248 216 19 chr9 11463100 11463609 -106399018 - L2 LINE L2 -2 3311 2664 807 130 19 80 chr9 11463612 11463774 -106398853 + AluSg/x SINE Alu 140 291 -21 565 243 64 0 chr9 11463784 11463957 -106398670 - L2 LINE L2 -639 2675 2492 244 214 143 80 chr9 11464023 11464135 -106398492 + L2 LINE L2 3154 3272 0 970 146 38 0 chr9 11464257 11464415 -106398212 - AluSg/x SINE Alu -4 308 145 3135 71 5 5 chr9 11464568 11464991 -106397636 + L1PA6 LINE L1 5732 6154 0 844 180 50 0 chr9 11464991 11465152 -106397475 - THE1C LTR MaLR -206 169 1 26 0 0 0 chr9 11465590 11465616 -106397011 + AT_rich Low_complexity Low_complexity 1 26 0 243 100 100 0 chr9 11466818 11466858 -106395769 + MSTA LTR MaLR 385 428 0 505 286 59 49 chr9 11467052 11467443 -106395184 + L1MDa LINE L1 1525 1919 -4621 384 125 0 0 chr9 11467826 11467890 -106394737 + (CA)n Simple_repeat Simple_repeat 2 65 0 2005 141 0 0 chr9 11468076 11468380 -106394247 - AluSx SINE Alu 0 304 1 631 274 67 74 chr9 11468416 11469834 -106392793 + L1MDa LINE L1 2621 4028 -2512 234 306 24 0 chr9 11470018 11470103 -106392524 + L1MCc LINE L1 113 199 -6224 1357 263 50 13 chr9 11470176 11470633 -106391994 + L1MCc LINE L1 3032 3505 -3436 3863 146 64 40 chr9 11470823 11471578 -106391049 - LTR1 LTR ERV1 0 785 13 1215 62 19 0 chr9 11471886 11472048 -106390579 + L1PA7 LINE L1 5990 6154 0 186 43 0 0 chr9 11472159 11472182 -106390445 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr9 11472568 11472589 -106390038 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr9 11472690 11472719 -106389908 + AT_rich Low_complexity Low_complexity 1 29 0 3844 36 0 0 chr9 11472861 11473339 -106389288 + L1P LINE L1 2296 2773 -3373 1213 140 4 1 chr9 11473439 11475014 -106387613 - ALR/Alpha Satellite centromeric 0 1579 1 4359 91 17 4 chr9 11475017 11476028 -106386599 - MER11A LTR ERVK -5 1261 1 1291 133 3 1 chr9 11476023 11481168 -106381459 - ALR/Alpha Satellite centromeric -55 5153 1 * 1217 140 2 4 chr9 11481268 11482490 -106380137 + ALR/Alpha Satellite centromeric 1 1220 -27 1192 133 3 3 chr9 11482503 11484553 -106378074 + ALR/Alpha Satellite centromeric 1 2049 -4 550 141 0 0 chr9 11484553 11484638 -106377989 + AluSg/x SINE Alu 217 301 -8 1300 126 5 3 chr9 11484645 11489698 -106372929 + ALR/Alpha Satellite centromeric 1 5064 0 11199 75 2 6 chr9 11489806 11492127 -106370500 + L1PA5 LINE L1 3848 6151 -3 1104 140 7 4 chr9 11492133 11493686 -106368941 + ALR/Alpha Satellite centromeric 1 1557 -34 490 226 0 0 chr9 11494515 11494632 -106367995 - L1MC4 LINE L1 0 8042 7901 1870 110 50 0 chr9 11494695 11494976 -106367651 - AluSx SINE Alu -16 296 2 576 227 148 75 chr9 11494976 11495222 -106367405 - L1MC4 LINE L1 -995 6813 6586 2012 124 10 7 chr9 11495222 11495520 -106367107 - AluSx SINE Alu -13 299 1 576 227 148 75 chr9 11495520 11495942 -106366685 - L1MC4 LINE L1 -1222 6586 6116 * 1004 147 28 6 chr9 11495935 11496112 -106366515 - L1PA16 LINE L1 -34 6132 5952 640 187 89 31 chr9 11496137 11496332 -106366295 - MER33 DNA MER1_type -255 69 1 192 163 0 0 chr9 11496714 11496757 -106365870 + (CA)n Simple_repeat Simple_repeat 2 44 0 2650 208 15 37 chr9 11497538 11498220 -106364407 + L1 LINE L1 3179 3845 -2301 650 342 10 28 chr9 11498231 11498623 -106364004 + L1PA16 LINE L1 10 394 -7187 846 227 5 5 chr9 11499727 11499962 -106362665 + L1PA16 LINE L1 3262 3603 -3981 1996 176 12 18 chr9 11499963 11499991 -106362636 - MER1B DNA MER1_type -2373 339 312 5275 74 0 25 chr9 11499991 11500697 -106361930 + LTR12 LTR ERV1 1 688 0 1996 176 12 18 chr9 11500697 11501009 -106361618 - MER1B DNA MER1_type -2400 312 1 10691 236 31 15 chr9 11501011 11504700 -106357927 + L1PA16 LINE L1 3599 7343 -261 1519 90 50 0 chr9 11505130 11505516 -106357111 + LTR19A LTR ERV1 1 486 0 39530 77 31 12 chr9 11505517 11511003 -106351624 + LTR19A-int LTR ERV1 1 5586 0 3347 89 25 0 chr9 11511003 11511477 -106351150 + LTR19A LTR ERV1 1 486 0 1151 157 30 0 chr9 11511522 11511719 -106350908 + L1PA16 LINE L1 7393 7595 -9 265 111 22 22 chr9 11511937 11511982 -106350645 + MER4A LTR ERV1 54 98 -566 1550 164 0 93 chr9 11512034 11512321 -106350306 + MER4A LTR ERV1 372 627 -37 1457 56 0 0 chr9 11512321 11512501 -106350126 - L1PA3 LINE L1 0 6155 5976 1550 164 0 93 chr9 11512501 11512536 -106350091 + MER4A LTR ERV1 627 664 0 427 219 171 0 chr9 11513043 11513148 -106349479 + MER5C DNA MER1_type 2 124 -200 24 67 0 0 chr9 11513536 11513581 -106349046 + AT_rich Low_complexity Low_complexity 1 45 0 280 308 136 42 chr9 11513736 11514353 -106348274 + HAL1b LINE L1 73 747 -601 41 66 0 0 chr9 11514365 11514441 -106348186 + AT_rich Low_complexity Low_complexity 1 76 0 857 212 33 24 chr9 11514565 11514777 -106347850 - MER20 DNA MER1_type -4 215 2 297 363 20 10 chr9 11515368 11515470 -106347157 + L2 LINE L2 3153 3255 -17 26 0 0 0 chr9 11516242 11516268 -106346359 + AT_rich Low_complexity Low_complexity 1 26 0 3980 33 0 6 chr9 11516479 11517001 -106345626 - L1PA3 LINE L1 0 6155 5674 1957 141 3 10 chr9 11517003 11517300 -106345327 - AluSq SINE Alu -16 297 3 21 0 0 0 chr9 11517316 11517337 -106345290 + AT_rich Low_complexity Low_complexity 1 21 0 628 272 117 58 chr9 11517841 11518344 -106344283 - HAL1 LINE L1 -389 2118 1586 190 339 0 32 chr9 11519411 11519473 -106343154 + MIR SINE MIR 30 89 -173 22 35 0 0 chr9 11519475 11519504 -106343123 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr9 11519547 11519567 -106343060 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 298 380 25 0 chr9 11520062 11520183 -106342444 - MIR3 SINE MIR -28 180 57 351 222 167 9 chr9 11522635 11522743 -106339884 + L2 LINE L2 3182 3306 -7 2187 154 32 2 chr9 11522780 11523183 -106339444 - L1MA3 LINE L1 -1120 5026 4612 5014 155 17 42 chr9 11523183 11524376 -106338251 + L1MA3 LINE L1 5023 6187 -118 1964 68 0 0 chr9 11524548 11524797 -106337830 - L1PA5 LINE L1 -5 6149 5901 9608 39 0 5 chr9 11524797 11526485 -106336142 + L1PA5 LINE L1 4211 5891 -263 783 131 0 48 chr9 11526485 11526622 -106336005 + L1MA3 LINE L1 6166 6303 -2 24 53 0 0 chr9 11526702 11526740 -106335887 + AT_rich Low_complexity Low_complexity 1 38 0 27 49 0 0 chr9 11526797 11526838 -106335789 + AT_rich Low_complexity Low_complexity 1 41 0 2073 131 0 10 chr9 11527008 11527320 -106335307 - AluSx SINE Alu 0 312 4 256 297 22 43 chr9 11527377 11527515 -106335112 - L1MC/D LINE L1 -2058 5750 5616 2512 111 6 3 chr9 11527722 11528083 -106334544 + THE1B LTR MaLR 1 362 -2 22 35 0 0 chr9 11529114 11529143 -106333484 + AT_rich Low_complexity Low_complexity 1 29 0 217 354 0 0 chr9 11531664 11531743 -106330884 + L2 LINE L2 3230 3308 -5 22 35 0 0 chr9 11531743 11531772 -106330855 + AT_rich Low_complexity Low_complexity 1 29 0 231 213 0 16 chr9 11532226 11532287 -106330340 + Charlie7 DNA MER1_type 41 100 -2512 234 274 217 0 chr9 11532553 11532659 -106329968 + L2 LINE L2 3185 3313 0 498 320 157 29 chr9 11532670 11532951 -106329676 + L3 LINE CR1 1256 1572 -5 25 0 0 0 chr9 11533819 11533844 -106328783 + AT_rich Low_complexity Low_complexity 1 25 0 1110 228 44 34 chr9 11535708 11536073 -106326554 - MLT1B LTR MaLR 0 390 6 343 198 0 23 chr9 11536245 11536331 -106326296 - L1MA9 LINE L1 -14 6298 6215 2446 161 19 26 chr9 11537004 11537471 -106325156 - MLT1C LTR MaLR -2 465 2 947 190 0 0 chr9 11538879 11539037 -106323590 + FAM SINE Alu 1 158 -17 396 0 0 0 chr9 11539039 11539083 -106323544 + (CATA)n Simple_repeat Simple_repeat 2 45 0 223 288 27 55 chr9 11541398 11541471 -106321156 - MER5A DNA MER1_type -65 124 54 222 358 44 15 chr9 11541518 11541655 -106320972 + MER5A DNA MER1_type 1 141 -48 843 218 6 6 chr9 11542151 11542321 -106320306 - MLT1C LTR MaLR -2 465 296 3820 125 14 163 chr9 11542321 11543860 -106318767 - pTR5 LTR ERV1 0 2606 1524 773 217 144 37 chr9 11543860 11544159 -106318468 - MLT1C LTR MaLR -131 336 6 22 0 0 0 chr9 11544412 11544434 -106318193 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 11546599 11546620 -106316007 + AT_rich Low_complexity Low_complexity 1 21 0 354 217 0 54 chr9 11547798 11547890 -106314737 + L1MC/D LINE L1 4680 4766 -1380 1947 262 57 28 chr9 11547982 11548949 -106313678 + L1ME1 LINE L1 5135 6122 -44 479 244 39 13 chr9 11548835 11548991 -106313636 + L1MA10 LINE L1 6167 6326 -8 * 347 335 108 20 chr9 11549045 11549248 -106313379 + MIR SINE MIR 35 255 -7 517 188 55 16 chr9 11550287 11550434 -106312193 + L1MA5A LINE L1 5241 5391 -756 * 1725 197 43 33 chr9 11550409 11550953 -106311674 + L1MC/D LINE L1 4923 5464 -743 1133 203 22 87 chr9 11550992 11551398 -106311229 + MER66A LTR ERV1 97 438 -40 2932 216 30 69 chr9 11551439 11552390 -106310237 + MER66A-int LTR ERV1 67 1114 -5562 7092 178 35 24 chr9 11552751 11554105 -106308522 + MER66A-int LTR ERV1 1210 2578 -4098 2551 162 16 3 chr9 11554128 11554944 -106307683 + MER66-int LTR ERV1 5018 5974 -702 2812 157 43 26 chr9 11554947 11555534 -106307093 + L1MA5A LINE L1 5691 6287 -10 4772 173 61 24 chr9 11555546 11555831 -106306796 + L1MC1 LINE L1 5327 5600 -733 2405 67 0 10 chr9 11555831 11556145 -106306482 + AluY SINE Alu 1 311 0 4772 173 61 24 chr9 11556145 11556830 -106305797 + L1MC1 LINE L1 5600 6332 -1 293 331 26 45 chr9 11558238 11558392 -106304235 + L2 LINE L2 3127 3277 -36 207 250 0 0 chr9 11558757 11558801 -106303826 + (TG)n Simple_repeat Simple_repeat 2 45 0 456 104 0 0 chr9 11559568 11559635 -106302992 + (TG)n Simple_repeat Simple_repeat 2 68 0 240 239 15 0 chr9 11559635 11559702 -106302925 + (TA)n Simple_repeat Simple_repeat 1 68 0 25 75 0 0 chr9 11559722 11559775 -106302852 + AT_rich Low_complexity Low_complexity 1 53 0 198 169 46 0 chr9 11559783 11559848 -106302779 + (TA)n Simple_repeat Simple_repeat 1 68 0 2238 278 70 43 chr9 11560447 11561978 -106300649 + L1ME LINE L1 37 1664 -4732 246 234 0 0 chr9 11562090 11562154 -106300473 + L1ME LINE L1 2200 2263 -3952 * 814 233 50 63 chr9 11562152 11562598 -106300029 + L1ME LINE L1 5178 5612 -623 242 309 40 13 chr9 11563101 11563253 -106299374 - MER103 DNA DNA -10 156 1 22 70 0 0 chr9 11564358 11564401 -106298226 + AT_rich Low_complexity Low_complexity 1 43 0 694 266 28 83 chr9 11564797 11565402 -106297225 - L1MEc LINE L1 -5180 1216 645 307 321 230 12 chr9 11566580 11566745 -106295882 - MIR SINE MIR -17 245 45 231 279 0 15 chr9 11568121 11568189 -106294438 + CT-rich Low_complexity Low_complexity 3 69 0 616 268 155 0 chr9 11569506 11569700 -106292927 + MER58A DNA MER1_type 1 224 0 251 229 59 7 chr9 11569945 11570098 -106292529 + (TA)n Simple_repeat Simple_repeat 2 162 0 466 271 8 0 chr9 11571230 11571352 -106291275 + L1MEc LINE L1 2516 2638 -3577 2890 117 2 2 chr9 11571417 11571828 -106290799 + PABL_B LTR ERV1 255 665 -2 2016 198 16 3 chr9 11571830 11572204 -106290423 - MER72 LTR ERV1 -335 387 9 251 277 0 0 chr9 11572677 11572742 -106289885 + MER57-int LTR ERV1 3981 4045 -3373 291 239 0 14 chr9 11572796 11572867 -106289760 + MER57-int LTR ERV1 3302 3371 -2575 1048 215 53 40 chr9 11572876 11573412 -106289215 + MER57-int LTR ERV1 1728 2565 -2558 341 158 0 40 chr9 11573414 11573490 -106289137 + MER57-int LTR ERV1 3846 3918 -2680 * 2945 197 70 102 chr9 11573486 11573926 -106288701 + MER57-int LTR ERV1 3022 3475 -1396 4196 168 38 3 chr9 11573926 11574682 -106287945 + LTR39 LTR ERV1 1 783 0 2945 197 70 102 chr9 11574682 11576146 -106286481 + MER57-int LTR ERV1 3475 4080 -791 1605 237 122 17 chr9 11576201 11576661 -106285966 + MER57-int LTR ERV1 6635 7142 -395 1418 193 83 70 chr9 11576662 11577165 -106285462 + LTR54 LTR ERV1 1 510 0 256 33 0 0 chr9 11577168 11577198 -106285429 - MSTB2 LTR MaLR -385 72 43 4868 263 71 20 chr9 11577218 11577245 -106285382 - MSTB1-int LTR MaLR -7 1644 1620 1637 210 125 70 chr9 11577245 11577934 -106284693 - LTR8A LTR ERV1 0 727 1 4868 263 71 20 chr9 11577934 11579507 -106283120 - MSTB1-int LTR MaLR -31 1620 28 939 242 68 37 chr9 11579516 11579911 -106282716 - MSTB1 LTR MaLR 0 432 1 * 6046 145 19 21 chr9 11579911 11580940 -106281687 + Tigger1 DNA MER2_type 638 1664 -754 742 175 0 8 chr9 11580936 11581062 -106281565 + Tigger1 DNA MER2_type 2285 2409 -9 * 1184 196 25 21 chr9 11581062 11581342 -106281285 + L1MC2 LINE L1 6053 6333 -11 393 290 95 12 chr9 11581442 11581611 -106281016 + L1ME3A LINE L1 5755 5937 -233 999 310 47 48 chr9 11581879 11582457 -106280170 + L1P4 LINE L1 788 1364 -6210 340 340 0 10 chr9 11582601 11582704 -106279923 + L1P4 LINE L1 2081 2182 -5399 2186 269 52 19 chr9 11582930 11583662 -106278965 + L1P4 LINE L1 2172 2927 -4654 11402 239 31 31 chr9 11583669 11585329 -106277298 + L1P4 LINE L1 3280 4938 -2666 216 67 0 0 chr9 11585329 11585359 -106277268 + (CAA)n Simple_repeat Simple_repeat 1 30 0 11402 239 31 31 chr9 11585359 11587413 -106275214 + L1P4 LINE L1 4938 6982 -622 1646 278 26 7 chr9 11587407 11588025 -106274602 - L1M4 LINE L1 -2283 3863 3234 * 198 108 81 0 chr9 11588112 11588186 -106274441 + (TA)n Simple_repeat Simple_repeat 1 80 0 1416 265 131 10 chr9 11588262 11588865 -106273762 + L1ME1 LINE L1 5351 6026 -140 265 353 122 0 chr9 11589577 11589716 -106272911 - MIR3 SINE MIR -14 194 39 2373 57 0 38 chr9 11590311 11590625 -106272002 + AluY SINE Alu 1 302 -9 240 320 143 7 chr9 11590722 11590869 -106271758 + MIR SINE MIR 36 202 -60 267 54 0 0 chr9 11591244 11591281 -106271346 + (TTTG)n Simple_repeat Simple_repeat 1 37 0 1586 143 14 38 chr9 11591281 11591568 -106271059 - AluSx SINE Alu -32 280 1 301 390 14 14 chr9 11592014 11592237 -106270390 - ERVL LTR ERVL -4049 1715 1493 655 325 66 12 chr9 11592375 11592707 -106269920 - ERVL LTR ERVL -3796 1200 851 252 345 61 12 chr9 11592889 11593300 -106269327 - L1M4 LINE L1 -3448 2698 2268 43 20 0 0 chr9 11593538 11593588 -106269039 + AT_rich Low_complexity Low_complexity 1 50 0 1163 109 5 5 chr9 11593589 11593773 -106268854 - L1MA1 LINE L1 -1 6301 6118 1211 156 49 8 chr9 11593776 11594020 -106268607 + Tigger2 DNA MER2_type 2455 2708 -10 22 56 0 0 chr9 11594269 11594305 -106268322 + AT_rich Low_complexity Low_complexity 1 36 0 1230 225 75 28 chr9 11594406 11594726 -106267901 - MLT1B LTR MaLR -55 335 1 668 258 19 43 chr9 11594870 11595289 -106267338 - L1ME1 LINE L1 -98 6068 5599 570 302 212 38 chr9 11595310 11596069 -106266558 - HAL1 LINE L1 -1551 956 66 198 0 0 0 chr9 11596750 11596772 -106265855 + (T)n Simple_repeat Simple_repeat 1 22 0 1056 120 204 0 chr9 11597441 11597632 -106264995 + MER30 DNA MER1_type 1 230 0 1690 166 20 17 chr9 11597675 11597977 -106264650 + AluJb SINE Alu 2 304 -8 244 269 0 0 chr9 11598751 11598803 -106263824 + (TG)n Simple_repeat Simple_repeat 2 53 0 762 211 69 6 chr9 11599385 11599560 -106263067 - L1MB3 LINE L1 -1 6182 5997 2027 163 12 58 chr9 11600509 11600938 -106261689 + L1MA7 LINE L1 5883 6291 0 23 0 0 0 chr9 11601453 11601476 -106261151 + AT_rich Low_complexity Low_complexity 1 23 0 33 56 0 0 chr9 11601582 11601636 -106260991 + AT_rich Low_complexity Low_complexity 1 54 0 1050 255 102 6 chr9 11602697 11603050 -106259577 - MLT1B LTR MaLR -3 387 1 190 421 40 16 chr9 11603156 11603282 -106259345 + L2 LINE L2 3142 3270 -2 213 240 0 0 chr9 11603647 11603722 -106258905 + (CA)n Simple_repeat Simple_repeat 2 76 0 21 0 0 0 chr9 11603790 11603811 -106258816 + AT_rich Low_complexity Low_complexity 1 21 0 3086 155 24 7 chr9 11604193 11604730 -106257897 - LTR38 LTR ERV1 0 556 11 35 0 0 0 chr9 11605191 11605226 -106257401 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr9 11605408 11605437 -106257190 + AT_rich Low_complexity Low_complexity 1 29 0 2987 241 61 10 chr9 11605541 11606506 -106256121 + Charlie5 DNA MER1_type 1 1000 -1612 4238 179 55 30 chr9 11606541 11607229 -106255398 + Charlie5 DNA MER1_type 1496 2165 -459 2241 78 7 20 chr9 11607229 11607535 -106255092 - AluSp SINE Alu -11 302 1 4238 179 55 30 chr9 11607535 11607654 -106254973 + Charlie5 DNA MER1_type 2165 2280 -344 2164 147 108 5 chr9 11607654 11608042 -106254585 - MSTA LTR MaLR 0 428 1 4238 179 55 30 chr9 11608042 11608322 -106254305 + Charlie5 DNA MER1_type 2280 2611 -13 207 0 0 0 chr9 11608932 11608955 -106253672 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 207 0 0 0 chr9 11609940 11609963 -106252664 + (A)n Simple_repeat Simple_repeat 1 23 0 284 330 11 0 chr9 11610824 11610915 -106251712 + MIR SINE MIR 171 262 0 21 0 0 0 chr9 11612515 11612536 -106250091 + AT_rich Low_complexity Low_complexity 1 21 0 968 235 15 0 chr9 11613265 11613469 -106249158 + MER58A DNA MER1_type 9 215 -9 22 0 0 0 chr9 11614977 11614999 -106247628 + AT_rich Low_complexity Low_complexity 1 22 0 1523 235 166 34 chr9 11615348 11615901 -106246726 + MLT1E2 LTR MaLR 1 626 0 676 212 66 0 chr9 11616550 11616701 -106245926 + L1MC/D LINE L1 4051 4211 -1935 2627 116 6 0 chr9 11616701 11617063 -106245564 + THE1B LTR MaLR 1 364 0 9625 113 48 37 chr9 11617063 11618626 -106244001 + THE1B-int LTR MaLR 1 1580 0 2265 117 0 67 chr9 11618626 11618943 -106243684 + THE1B LTR MaLR 1 289 -75 2762 74 22 0 chr9 11618943 11619310 -106243317 - L1PA8 LINE L1 -4 6168 5794 2265 117 0 67 chr9 11619310 11619378 -106243249 + THE1B LTR MaLR 289 360 -4 3073 92 5 0 chr9 11619404 11619829 -106242798 + L1PA6 LINE L1 5728 6154 0 2606 249 20 23 chr9 11619829 11620714 -106241913 + L1MC/D LINE L1 4233 5115 -1031 1777 156 104 42 chr9 11622116 11622305 -106240322 + MSTA LTR MaLR 1 177 -251 2133 102 0 3 chr9 11622305 11622627 -106240000 + AluSg SINE Alu 1 321 0 1777 156 104 42 chr9 11622627 11622839 -106239788 + MSTA LTR MaLR 177 428 0 2110 213 54 10 chr9 11623316 11623944 -106238683 + L1MC/D LINE L1 5114 5769 -575 3847 168 45 4 chr9 11623945 11624628 -106237999 - MER50 LTR ERV1 -23 711 1 717 254 110 19 chr9 11624643 11624852 -106237775 - LTR48 LTR ERV1 -559 228 1 469 259 22 87 chr9 11625022 11625207 -106237420 - LTR48-int LTR ERV1 -223 4713 4541 * 5483 148 26 16 chr9 11625203 11625756 -106236871 - LTR49-int LTR ERV1 -541 5790 5221 2045 188 30 5 chr9 11625756 11626149 -106236478 + MER57A LTR ERV1 1 403 0 5483 148 26 16 chr9 11626149 11626605 -106236022 - LTR49-int LTR ERV1 -1110 5221 4771 555 190 70 28 chr9 11626605 11626747 -106235880 + LTR23 LTR ERV1 3 150 -287 6545 116 19 11 chr9 11626810 11627856 -106234771 - L1MA1 LINE L1 0 6302 5252 389 206 246 0 chr9 11627833 11627959 -106234668 - L1 LINE L1 -2423 5142 4986 * 995 188 45 0 chr9 11627963 11628139 -106234488 + AluSg/x SINE Alu 107 290 -22 19542 180 28 12 chr9 11628139 11628505 -106234122 - L1 LINE L1 -2584 4981 4622 1957 152 3 0 chr9 11628505 11628802 -106233825 + AluSx SINE Alu 1 298 -14 19542 180 28 12 chr9 11628802 11629923 -106232704 - L1 LINE L1 -2943 4622 3521 614 48 0 12 chr9 11629923 11630006 -106232621 + (TTCC)n Simple_repeat Simple_repeat 4 85 0 19542 180 28 12 chr9 11630006 11630145 -106232482 - L1 LINE L1 -4044 3521 3386 1204 109 47 0 chr9 11630145 11630337 -106232290 - L1PA13 LINE L1 -4 6159 5959 19542 180 28 12 chr9 11630337 11633595 -106229032 - L1 LINE L1 -4179 3386 16 1375 149 3 57 chr9 11633645 11633927 -106228700 + LTR23 LTR ERV1 161 427 -10 558 267 69 69 chr9 11633936 11634198 -106228429 - LTR49-int LTR ERV1 -1560 4771 4510 2152 172 41 111 chr9 11634198 11634570 -106228057 - LTR49-int LTR ERV1 -1935 4396 4100 2007 126 0 3 chr9 11634570 11634856 -106227771 + AluSx SINE Alu 1 285 -27 2152 172 41 111 chr9 11634856 11635220 -106227407 - LTR49-int LTR ERV1 -2231 4100 3712 717 180 0 16 chr9 11635307 11635435 -106227192 + FLAM_C SINE Alu 1 126 -7 1085 175 53 77 chr9 11635451 11635788 -106226839 - LTR49-int LTR ERV1 -2651 3680 3352 6322 208 57 57 chr9 11635823 11636471 -106226156 - LTR49-int LTR ERV1 -2964 3367 2721 235 182 0 0 chr9 11636471 11636515 -106226112 + MER54B LTR ERVL 746 789 -4 6322 208 57 57 chr9 11636515 11637519 -106225108 - LTR49-int LTR ERV1 -3610 2721 1671 424 100 0 0 chr9 11637519 11637579 -106225048 - Alu SINE Alu -250 60 1 324 205 36 36 chr9 11637579 11637662 -106224965 - LTR49-int LTR ERV1 -4712 1619 1537 1274 170 150 42 chr9 11637924 11638330 -106224297 + LTR7 LTR ERV1 1 450 0 429 191 35 9 chr9 11638330 11638445 -106224182 + HERVH LTR ERV1 1 118 -7595 256 175 0 0 chr9 11638445 11638485 -106224142 + LTR7 LTR ERV1 411 450 0 1549 208 0 13 chr9 11638748 11639051 -106223576 - AluJb SINE Alu -13 299 1 320 274 12 12 chr9 11639383 11639467 -106223160 - MER58B DNA MER1_type -18 323 240 441 142 50 5 chr9 11639470 11639577 -106223050 - MER39 LTR ERV1 -4 703 447 1850 170 55 32 chr9 11639579 11639916 -106222711 + MER61C LTR ERV1 1 337 -97 1899 121 0 7 chr9 11639916 11640217 -106222410 + AluSc SINE Alu 1 299 0 1850 170 55 32 chr9 11640217 11640318 -106222309 + MER61C LTR ERV1 337 434 0 * 2122 244 76 37 chr9 11640318 11640966 -106221661 - LTR48 LTR ERV1 -113 674 1 1198 234 68 57 chr9 11641104 11641619 -106221008 - MER39 LTR ERV1 0 707 4 1627 166 86 12 chr9 11641806 11642144 -106220483 + MER47A DNA MER2_type 2 364 -2 253 289 197 73 chr9 11643574 11643792 -106218835 + MIR SINE MIR 6 250 -12 237 363 73 22 chr9 11644963 11645280 -106217347 - L2 LINE L2 -1230 2084 1752 246 81 0 0 chr9 11645349 11645386 -106217241 + (TA)n Simple_repeat Simple_repeat 1 37 0 266 273 15 15 chr9 11645471 11645537 -106217090 - L2 LINE L2 -6 3266 3201 252 374 9 61 chr9 11645678 11645892 -106216735 - L2 LINE L2 -213 3059 2857 236 366 30 8 chr9 11646289 11646423 -106216204 - L2 LINE L2 -963 2351 2215 275 202 48 29 chr9 11647587 11647691 -106214936 + (TCTA)n Simple_repeat Simple_repeat 4 109 0 26 30 0 0 chr9 11647923 11647956 -106214671 + AT_rich Low_complexity Low_complexity 1 33 0 782 236 6 0 chr9 11647963 11648124 -106214503 - FAM SINE Alu -13 162 1 210 296 0 0 chr9 11648141 11648195 -106214432 + (TG)n Simple_repeat Simple_repeat 2 55 0 2504 68 0 0 chr9 11648445 11648753 -106213874 + AluY SINE Alu 1 308 -3 1695 104 39 0 chr9 11648947 11649178 -106213449 + AluSx SINE Alu 1 240 -72 567 328 134 8 chr9 11649270 11649651 -106212976 + MLT1J2 LTR MaLR 3 431 -19 312 285 165 19 chr9 11650178 11650336 -106212291 - MIR SINE MIR -56 206 26 270 132 0 0 chr9 11652343 11652396 -106210231 + (TG)n Simple_repeat Simple_repeat 2 54 0 2516 113 16 3 chr9 11653254 11653624 -106209003 + THE1C LTR MaLR 1 375 0 677 45 11 0 chr9 11654904 11654993 -106207634 + (TTCC)n Simple_repeat Simple_repeat 3 92 0 1022 205 9 14 chr9 11654993 11655208 -106207419 - AluJo SINE Alu -12 300 87 613 158 82 54 chr9 11655469 11655653 -106206974 + MER53 DNA DNA 1 189 0 223 218 18 0 chr9 11656964 11657019 -106205608 + (TA)n Simple_repeat Simple_repeat 2 57 0 1911 203 44 7 chr9 11657196 11657605 -106205022 + MSTB LTR MaLR 1 424 -2 1117 246 141 17 chr9 11657708 11658127 -106204500 - MLT1D LTR MaLR -34 471 1 26 30 0 0 chr9 11658619 11658652 -106203975 + AT_rich Low_complexity Low_complexity 1 33 0 225 313 0 10 chr9 11658848 11658947 -106203680 + (TTAA)n Simple_repeat Simple_repeat 1 98 0 25 0 0 0 chr9 11658985 11659010 -106203617 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr9 11659238 11659266 -106203361 + AT_rich Low_complexity Low_complexity 1 28 0 30 0 0 0 chr9 11659320 11659350 -106203277 + AT_rich Low_complexity Low_complexity 1 30 0 2189 64 0 0 chr9 11659460 11659727 -106202900 - AluY SINE Alu -44 267 1 2079 123 0 0 chr9 11659791 11660095 -106202532 + AluSq SINE Alu 2 305 0 23 0 0 0 chr9 11660699 11660722 -106201905 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr9 11661087 11661115 -106201512 + AT_rich Low_complexity Low_complexity 1 28 0 290 151 0 0 chr9 11661235 11661288 -106201339 - MER41B LTR ERV1 -100 535 483 293 294 0 0 chr9 11661324 11661409 -106201218 + A-rich Low_complexity Low_complexity 1 85 0 2289 107 24 0 chr9 11661582 11661919 -106200708 - L1PA10 LINE L1 -1 6167 5823 7369 196 46 12 chr9 11662620 11665826 -106196801 + L1MA4 LINE L1 22 7705 -14 207 0 0 0 chr9 11665850 11665873 -106196754 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2385 77 3 0 chr9 11667174 11667484 -106195143 + AluY SINE Alu 1 311 0 31 26 0 0 chr9 11667678 11667716 -106194911 + AT_rich Low_complexity Low_complexity 1 38 0 1720 173 3 0 chr9 11670120 11670404 -106192223 + AluSx SINE Alu 1 285 -27 230 252 92 25 chr9 11670501 11670620 -106192007 + MLT1L LTR MaLR 481 607 -8 24 0 0 0 chr9 11671424 11671448 -106191179 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chr9 11673350 11673380 -106189247 + AT_rich Low_complexity Low_complexity 1 30 0 218 177 0 48 chr9 11674401 11674463 -106188164 + GA-rich Low_complexity Low_complexity 2 60 0 1275 259 86 23 chr9 11674571 11674852 -106187775 + L1ME1 LINE L1 4372 4634 -1512 1879 187 25 129 chr9 11674852 11674983 -106187644 - LTR9 LTR ERV1 0 612 469 1481 133 130 11 chr9 11674983 11675277 -106187350 + AluSx SINE Alu 2 312 0 1879 187 25 129 chr9 11675277 11675828 -106186799 - LTR9 LTR ERV1 -143 469 1 1275 259 86 23 chr9 11675828 11676152 -106186475 + L1ME1 LINE L1 4634 5015 -1131 * 1339 230 69 19 chr9 11676126 11676548 -106186079 + L1ME1 LINE L1 5719 6161 -5 853 175 148 27 chr9 11676717 11676940 -106185687 + LTR48 LTR ERV1 1 250 -537 485 244 91 17 chr9 11678106 11678282 -106184345 - MIR SINE MIR 0 262 74 201 358 15 45 chr9 11679045 11679179 -106183448 - MIR SINE MIR -109 153 24 294 50 0 0 chr9 11679541 11679581 -106183046 + (TC)n Simple_repeat Simple_repeat 1 40 0 1064 349 49 25 chr9 11679823 11680450 -106182177 - L2 LINE L2 -830 2484 1843 252 290 54 11 chr9 11680644 11680737 -106181890 + L1ME LINE L1 5497 5593 -573 200 211 0 0 chr9 11680812 11680850 -106181777 + (TTAG)n Simple_repeat Simple_repeat 3 40 0 763 323 57 46 chr9 11681376 11681937 -106180690 - L2 LINE L2 -1485 1829 1263 24 0 0 0 chr9 11681940 11681964 -106180663 + AT_rich Low_complexity Low_complexity 1 24 0 802 343 102 21 chr9 11682065 11682625 -106180002 + L2 LINE L2 1935 2541 -773 415 298 37 46 chr9 11682625 11682809 -106179818 - MER5B DNA MER1_type -1 177 10 274 398 37 12 chr9 11682900 11683061 -106179566 + L2 LINE L2 2608 2772 -542 605 366 12 4 chr9 11683309 11683560 -106179067 - MIR SINE MIR -2 260 8 5613 159 11 44 chr9 11683593 11684160 -106178467 - L1MA10 LINE L1 0 6334 5750 1544 126 57 4 chr9 11684160 11684407 -106178220 - AluSq SINE Alu -9 304 45 5613 159 11 44 chr9 11684407 11685129 -106177498 - L1MA10 LINE L1 -584 5750 5078 25 0 0 0 chr9 11688337 11688362 -106174265 + AT_rich Low_complexity Low_complexity 1 25 0 390 151 0 0 chr9 11688849 11688935 -106173692 + L1PA12 LINE L1 5932 6017 -151 1876 153 3 0 chr9 11689079 11689387 -106173240 - AluSx SINE Alu -3 309 1 972 338 24 16 chr9 11689424 11689967 -106172660 + L2 LINE L2 2683 3313 0 265 310 35 35 chr9 11689975 11690117 -106172510 + MIR SINE MIR 81 222 -40 21 0 0 0 chr9 11690554 11690575 -106172052 + AT_rich Low_complexity Low_complexity 1 21 0 3533 125 64 8 chr9 11691324 11691932 -106170695 - LTR12 LTR ERV1 0 1797 130 219 200 20 0 chr9 11692527 11692577 -106170050 + (TA)n Simple_repeat Simple_repeat 2 52 0 22 0 0 0 chr9 11693214 11693236 -106169391 + AT_rich Low_complexity Low_complexity 1 22 0 268 273 22 22 chr9 11693240 11693379 -106169248 + L1M4 LINE L1 2853 2991 -3155 24 0 0 0 chr9 11693837 11693861 -106168766 + AT_rich Low_complexity Low_complexity 1 24 0 342 286 121 29 chr9 11693973 11694179 -106168448 + L1M4 LINE L1 3596 3820 -2326 33 0 0 0 chr9 11694465 11694498 -106168129 + AT_rich Low_complexity Low_complexity 1 33 0 24 67 0 0 chr9 11694676 11694721 -106167906 + AT_rich Low_complexity Low_complexity 1 45 0 32 76 0 11 chr9 11694784 11694841 -106167786 + AT_rich Low_complexity Low_complexity 1 58 -33 2028 134 3 0 chr9 11694841 11695131 -106167496 + AluSx SINE Alu 1 291 -21 32 76 0 11 chr9 11695131 11695165 -106167462 + AT_rich Low_complexity Low_complexity 58 91 0 1940 229 61 28 chr9 11695242 11695846 -106166781 - MER92B LTR ERV1 -12 624 1 23 78 0 0 chr9 11696490 11696541 -106166086 + AT_rich Low_complexity Low_complexity 1 51 0 813 150 36 7 chr9 11697412 11697552 -106165075 - MSTA LTR MaLR -284 144 1 304 221 44 44 chr9 11697552 11697647 -106164980 + MER34 LTR ERV1 29 123 -419 225 256 0 0 chr9 11697780 11697823 -106164804 + MER34 LTR ERV1 1 43 -499 2285 113 8 11 chr9 11697902 11698256 -106164371 - THE1A LTR MaLR 0 355 3 10654 113 8 14 chr9 11698258 11699848 -106162779 - THE1A-int LTR MaLR 0 1580 1 1999 128 66 9 chr9 11699849 11700184 -106162443 - THE1A LTR MaLR -1 354 1 251 54 27 0 chr9 11700410 11700447 -106162180 + (GA)n Simple_repeat Simple_repeat 1 38 0 310 280 65 0 chr9 11700454 11700561 -106162066 - MIR SINE MIR -76 186 73 2708 183 14 45 chr9 11700619 11701139 -106161488 - MER34 LTR ERV1 0 542 39 2422 138 44 7 chr9 11701139 11701552 -106161075 + MSTA LTR MaLR 1 428 0 2708 183 14 45 chr9 11701552 11701590 -106161037 - MER34 LTR ERV1 -503 39 1 37 23 0 0 chr9 11702255 11702299 -106160328 + AT_rich Low_complexity Low_complexity 1 44 0 321 356 16 31 chr9 11703201 11703395 -106159232 + L1MEc LINE L1 110 300 -6096 338 314 101 13 chr9 11703417 11703576 -106159051 + MLT1K LTR MaLR 336 508 -80 511 226 102 0 chr9 11704701 11704838 -106157789 + L1MD3 LINE L1 7735 7885 -110 293 222 141 0 chr9 11704939 11705038 -106157589 + L1MD3 LINE L1 7860 7972 -23 186 333 98 8 chr9 11705276 11705399 -106157228 + L2 LINE L2 2926 3059 -213 694 263 103 30 chr9 11706058 11706495 -106156132 - Charlie2 DNA MER1_type 0 2862 2394 858 308 91 42 chr9 11706497 11707177 -106155450 - L2 LINE L2 -552 2762 1958 487 253 121 20 chr9 11707232 11707430 -106155197 + L1MA10 LINE L1 6117 6334 0 339 328 22 0 chr9 11707430 11707564 -106155063 - L2 LINE L2 -1347 1967 1831 * 604 266 72 69 chr9 11707559 11707879 -106154748 - L2 LINE L2 -1622 1692 1372 2177 112 0 3 chr9 11708191 11708494 -106154133 - AluSg SINE Alu -8 302 1 191 279 101 13 chr9 11708852 11708931 -106153696 - MIR SINE MIR -96 166 81 26 0 0 0 chr9 11710762 11710788 -106151839 + AT_rich Low_complexity Low_complexity 1 26 0 281 325 67 25 chr9 11712607 11712727 -106149900 - L2 LINE L2 0 3272 3148 655 153 0 8 chr9 11712734 11712852 -106149775 + L1MC/D LINE L1 5458 5574 -759 214 457 16 0 chr9 11712910 11713037 -106149590 - L2 LINE L2 -248 3024 2896 300 295 72 97 chr9 11713275 11713348 -106149279 + MLT1K LTR MaLR 208 281 -307 309 26 0 0 chr9 11713348 11713386 -106149241 + (TG)n Simple_repeat Simple_repeat 2 39 0 300 295 72 97 chr9 11713386 11713590 -106149037 + MLT1K LTR MaLR 281 478 -110 23 54 0 0 chr9 11713713 11713750 -106148877 + AT_rich Low_complexity Low_complexity 1 37 0 1851 139 45 27 chr9 11714040 11714371 -106148256 - MER1B DNA MER1_type 0 337 1 294 100 0 20 chr9 11714393 11714465 -106148162 + AluSc SINE Alu 247 299 0 2251 156 5 24 chr9 11715376 11715786 -106146841 - MER41B LTR ERV1 0 635 234 2657 98 93 5 chr9 11715793 11716200 -106146427 - LTR7 LTR ERV1 -7 443 1 1345 150 48 0 chr9 11716200 11716427 -106146200 - MER41B LTR ERV1 -397 238 1 186 71 0 0 chr9 11716476 11716504 -106146123 + (T)n Simple_repeat Simple_repeat 1 28 0 5263 149 15 52 chr9 11717534 11718934 -106143693 + L1PA16 LINE L1 4795 6166 0 819 264 158 0 chr9 11718978 11719243 -106143384 + MLT1A1 LTR MaLR 56 362 -3 24 0 0 0 chr9 11720281 11720305 -106142322 + AT_rich Low_complexity Low_complexity 1 24 0 2090 110 17 0 chr9 11720479 11720779 -106141848 + AluSc SINE Alu 1 305 -4 23 54 0 0 chr9 11721007 11721044 -106141583 + AT_rich Low_complexity Low_complexity 1 37 0 2777 195 75 37 chr9 11721335 11722072 -106140555 + L1MD1 LINE L1 5478 6242 0 324 309 21 42 chr9 11722053 11722244 -106140383 + L1MEc LINE L1 1615 1801 -4595 * 398 319 44 54 chr9 11722382 11722699 -106139928 + L1MEc LINE L1 1731 2044 -4352 1206 259 21 16 chr9 11722715 11723139 -106139488 + L1MEc LINE L1 2256 2681 -3534 33 0 0 0 chr9 11723453 11723486 -106139141 + AT_rich Low_complexity Low_complexity 1 33 0 2229 88 0 0 chr9 11723493 11723815 -106138812 + AluY SINE Alu 1 322 0 2035 143 0 3 chr9 11723985 11724292 -106138335 - AluSx SINE Alu -6 306 1 21 0 0 0 chr9 11724452 11724473 -106138154 + AT_rich Low_complexity Low_complexity 1 21 0 2224 121 0 3 chr9 11724649 11724962 -106137665 + AluSx SINE Alu 1 312 0 367 233 134 35 chr9 11725071 11725243 -106137384 + L1MC5 LINE L1 7712 7900 -61 1790 127 32 49 chr9 11725280 11725588 -106137039 + AluSx SINE Alu 1 303 -9 502 224 8 75 chr9 11725745 11725855 -106136772 + FLAM_A SINE Alu 1 102 -200 1999 122 37 0 chr9 11725855 11726149 -106136478 - AluSp SINE Alu -8 305 1 502 224 8 75 chr9 11726149 11726172 -106136455 + FLAM_A SINE Alu 102 125 -177 268 217 11 65 chr9 11726252 11726344 -106136283 + L2 LINE L2 2234 2320 -994 23 33 0 0 chr9 11726349 11726379 -106136248 + AT_rich Low_complexity Low_complexity 1 30 0 2175 131 33 6 chr9 11727073 11727408 -106135219 + MER41A LTR ERV1 1 344 -210 1724 140 0 23 chr9 11727408 11727673 -106134954 + AluSx SINE Alu 1 259 -53 180 97 0 0 chr9 11727673 11727704 -106134923 + (A)n Simple_repeat Simple_repeat 1 31 0 2112 114 3 0 chr9 11727716 11728006 -106134621 + AluSq SINE Alu 3 293 -20 25 0 0 0 chr9 11728254 11728279 -106134348 + AT_rich Low_complexity Low_complexity 1 25 0 2101 104 3 27 chr9 11728306 11728604 -106134023 - AluSg SINE Alu -19 291 1 2041 101 6 38 chr9 11728711 11729029 -106133598 + AluSp SINE Alu 5 312 -1 241 292 135 22 chr9 11729699 11729788 -106132839 - MIR SINE MIR -78 130 32 1117 221 0 32 chr9 11729822 11730075 -106132552 - L1MC3 LINE L1 -993 6792 6548 214 304 14 29 chr9 11730726 11730795 -106131832 + L2 LINE L2 3245 3312 -1 2116 160 38 30 chr9 11731241 11731790 -106130837 + MLT2A2 LTR ERVL 1 554 0 191 311 170 7 chr9 11731805 11731940 -106130687 + MIR SINE MIR 95 251 -11 416 226 81 24 chr9 11732261 11732385 -106130242 - L2 LINE L2 0 3313 3183 673 295 71 5 chr9 11732512 11732736 -106129891 - MIR SINE MIR -11 251 13 22 0 0 0 chr9 11733029 11733051 -106129576 + AT_rich Low_complexity Low_complexity 1 22 0 261 297 66 0 chr9 11734199 11734290 -106128337 + MIR SINE MIR 104 200 -62 34 42 0 0 chr9 11734400 11734448 -106128179 + AT_rich Low_complexity Low_complexity 1 48 0 26 0 0 0 chr9 11734752 11734778 -106127849 + AT_rich Low_complexity Low_complexity 1 26 0 1505 167 66 74 chr9 11734900 11735278 -106127349 + THE1C LTR MaLR 1 375 0 9425 126 63 6 chr9 11735278 11736773 -106125854 + THE1C-int LTR MaLR 1 1580 0 1627 147 55 68 chr9 11736773 11737153 -106125474 + THE1C LTR MaLR 1 375 0 200 286 57 29 chr9 11737632 11737702 -106124925 - MIR SINE MIR -55 153 82 2559 39 0 7 chr9 11737898 11738206 -106124421 - AluY SINE Alu -5 306 1 262 257 14 0 chr9 11738270 11738344 -106124283 + (TG)n Simple_repeat Simple_repeat 1 75 0 395 243 98 75 chr9 11738452 11738625 -106124002 - MER5B DNA MER1_type 0 178 2 183 42 0 0 chr9 11739192 11739216 -106123411 + (TG)n Simple_repeat Simple_repeat 1 24 0 29 47 0 0 chr9 11739470 11739513 -106123114 + AT_rich Low_complexity Low_complexity 1 43 0 5555 117 8 0 chr9 11739556 11740385 -106122242 - L1PA13 LINE L1 -20 6143 5308 332 278 111 12 chr9 11740387 11740518 -106122109 - MIR SINE MIR -57 151 11 269 235 12 0 chr9 11742364 11742449 -106120178 + (TATG)n Simple_repeat Simple_repeat 3 88 0 28 29 0 0 chr9 11742736 11742771 -106119856 + AT_rich Low_complexity Low_complexity 1 35 0 2202 258 69 46 chr9 11745776 11747157 -106115470 - L1ME LINE L1 -500 5600 4199 327 286 165 9 chr9 11747157 11747381 -106115246 - L1ME LINE L1 -2300 3780 3522 1913 262 82 39 chr9 11747381 11748825 -106113802 - L1ME LINE L1 -4575 1505 10 23 0 0 0 chr9 11749099 11749122 -106113505 + AT_rich Low_complexity Low_complexity 1 23 0 219 220 138 88 chr9 11749239 11749398 -106113229 + L2 LINE L2 3110 3276 -37 1413 153 16 28 chr9 11750229 11750478 -106112149 + L1PB3 LINE L1 5909 6154 0 656 288 123 48 chr9 11750940 11750976 -106111651 + L2 LINE L2 2616 2648 -665 3219 43 0 0 chr9 11750976 11751371 -106111256 - L1PA4 LINE L1 -3 6152 5758 656 288 123 48 chr9 11751371 11751878 -106110749 + L2 LINE L2 2648 3215 -98 384 313 40 7 chr9 11751880 11752030 -106110597 - HAL1 LINE L1 -734 1773 1619 707 296 100 34 chr9 11752052 11752730 -106109897 - HAL1 LINE L1 -968 1539 817 3324 261 52 32 chr9 11753204 11754585 -106108042 + L1M4 LINE L1 2553 3961 -2185 11203 41 0 0 chr9 11754585 11755952 -106106675 - L1P LINE L1 -972 5174 3808 2096 195 19 16 chr9 11756314 11756739 -106105888 + MSTB LTR MaLR 1 426 0 8572 185 33 4 chr9 11756739 11758342 -106104285 + MSTB-int LTR MaLR 1 1650 -1 1822 163 79 30 chr9 11758350 11758756 -106103871 + MSTB LTR MaLR 1 426 0 21 0 0 0 chr9 11758908 11758929 -106103698 + AT_rich Low_complexity Low_complexity 1 21 0 288 256 13 0 chr9 11759240 11759318 -106103309 - MER116 DNA Mariner 0 80 2 225 0 0 0 chr9 11760268 11760293 -106102334 + (TG)n Simple_repeat Simple_repeat 2 26 0 615 295 120 0 chr9 11760932 11761166 -106101461 + MIR SINE MIR 1 262 0 272 275 62 12 chr9 11761270 11761350 -106101277 - MIR SINE MIR -6 256 173 369 93 0 0 chr9 11761888 11761942 -106100685 + (TG)n Simple_repeat Simple_repeat 2 55 0 23 0 0 0 chr9 11762965 11762988 -106099639 + AT_rich Low_complexity Low_complexity 1 23 0 629 290 45 77 chr9 11763191 11763543 -106099084 + LTR16C LTR ERVL 151 491 0 267 279 205 31 chr9 11763577 11763738 -106098889 + MER5A DNA MER1_type 1 189 0 24 0 0 0 chr9 11764022 11764046 -106098581 + AT_rich Low_complexity Low_complexity 1 24 0 404 251 118 93 chr9 11765826 11765940 -106096687 + HAL1 LINE L1 43 153 -2354 2269 107 7 0 chr9 11765940 11766248 -106096379 + AluSx SINE Alu 1 310 -2 404 251 118 93 chr9 11766248 11766456 -106096171 + HAL1 LINE L1 153 373 -2134 439 343 131 7 chr9 11766464 11766761 -106095866 + HAL1 LINE L1 439 772 -1735 237 238 152 19 chr9 11766797 11767007 -106095620 + HAL1 LINE L1 1029 1266 -1241 440 333 86 17 chr9 11767100 11767334 -106095293 + MIR SINE MIR 4 253 -9 538 339 13 48 chr9 11767352 11767812 -106094815 + HAL1 LINE L1 1641 2084 -423 18943 158 35 12 chr9 11767819 11770253 -106092374 + L1M1 LINE L1 12 2389 -5176 2089 137 6 6 chr9 11770253 11770566 -106092061 + AluSq SINE Alu 1 313 0 18943 158 35 12 chr9 11770566 11770916 -106091711 + L1M1 LINE L1 2389 2730 -4835 3438 128 6 4 chr9 11770916 11771426 -106091201 + MER9 LTR ERVK 1 511 0 18943 158 35 12 chr9 11771426 11771901 -106090726 + L1M1 LINE L1 2730 3346 -4219 11628 181 59 25 chr9 11774066 11775246 -106087381 + L1M1 LINE L1 3334 4472 -3093 2080 139 0 0 chr9 11775246 11775555 -106087072 + AluSx SINE Alu 4 312 0 11628 181 59 25 chr9 11775555 11777422 -106085205 + L1M1 LINE L1 4472 6491 -1074 3204 120 16 0 chr9 11777422 11777933 -106084694 + L1MA3 LINE L1 5783 6305 0 322 277 28 14 chr9 11778132 11778273 -106084354 + HAL1 LINE L1 2237 2379 -128 799 177 96 90 chr9 11778277 11778435 -106084192 + L1MA9 LINE L1 6022 6165 -147 365 39 20 0 chr9 11778435 11778486 -106084141 + (CA)n Simple_repeat Simple_repeat 1 52 0 799 177 96 90 chr9 11778486 11778635 -106083992 + L1MA9 LINE L1 6165 6312 0 228 248 59 59 chr9 11778675 11778776 -106083851 + HAL1 LINE L1 2393 2493 -14 453 355 77 11 chr9 11778790 11778973 -106083654 - MER91A DNA MER1_type 0 196 2 1256 194 131 45 chr9 11779683 11780019 -106082608 + MLT1A1 LTR MaLR 1 365 0 707 296 89 44 chr9 11780660 11781066 -106081561 - L3b LINE CR1 -54 1529 1106 360 292 56 21 chr9 11781447 11781591 -106081036 + MIR3 SINE MIR 54 202 -6 1251 295 102 27 chr9 11781622 11782404 -106080223 - L2 LINE L2 -9 3304 2467 222 139 23 0 chr9 11783558 11783601 -106079026 + (CA)n Simple_repeat Simple_repeat 2 45 0 2034 127 3 7 chr9 11784334 11784626 -106078001 - AluSx SINE Alu -13 299 9 272 352 0 11 chr9 11784674 11784762 -106077865 - L2 LINE L2 -49 3223 3137 583 269 184 3 chr9 11785381 11785697 -106076930 + Charlie2 DNA MER1_type 2471 2843 -19 189 107 0 0 chr9 11785934 11785962 -106076665 + (CA)n Simple_repeat Simple_repeat 2 29 0 25 0 0 0 chr9 11786359 11786384 -106076243 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr9 11786461 11786490 -106076137 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr9 11787502 11787525 -106075102 + AT_rich Low_complexity Low_complexity 1 23 0 237 258 0 0 chr9 11787945 11787980 -106074647 + (TG)n Simple_repeat Simple_repeat 1 38 -28 2225 103 0 0 chr9 11787980 11788262 -106074365 - AluSc SINE Alu -25 284 3 237 258 0 0 chr9 11788262 11788292 -106074335 + (TG)n Simple_repeat Simple_repeat 37 66 0 191 167 24 0 chr9 11788458 11788500 -106074127 + (TATG)n Simple_repeat Simple_repeat 3 45 0 189 377 61 0 chr9 11788544 11788658 -106073969 - MIR SINE MIR -122 140 20 297 0 0 0 chr9 11789703 11789736 -106072891 + (CA)n Simple_repeat Simple_repeat 2 34 0 22 0 0 0 chr9 11789759 11789781 -106072846 + AT_rich Low_complexity Low_complexity 1 22 0 2153 107 71 21 chr9 11790049 11790385 -106072242 - THE1A LTR MaLR 0 355 3 11339 105 1 7 chr9 11790387 11791976 -106070651 - THE1A-int LTR MaLR 0 1580 1 2250 89 86 0 chr9 11791976 11792301 -106070326 - THE1A LTR MaLR 0 355 3 254 326 7 20 chr9 11793356 11793503 -106069124 + GA-rich Low_complexity Low_complexity 3 147 0 29 47 0 0 chr9 11793862 11793905 -106068722 + AT_rich Low_complexity Low_complexity 1 43 0 829 298 39 12 chr9 11794323 11794655 -106067972 - HAL1 LINE L1 -617 1890 1550 366 333 123 4 chr9 11794880 11795123 -106067504 - HAL1 LINE L1 -938 1569 1298 7096 34 2 0 chr9 11795208 11796054 -106066573 - L1PA4 LINE L1 -4 6151 5304 227 254 0 15 chr9 11796063 11796130 -106066497 - L1M4 LINE L1 -2339 3807 3742 461 296 0 0 chr9 11796162 11796314 -106066313 - L1M4 LINE L1 -2390 3756 3605 518 269 88 46 chr9 11796338 11796621 -106066006 + L1ME1 LINE L1 5828 6122 -44 5877 161 24 19 chr9 11797622 11798648 -106063979 + THE1C-int LTR MaLR 549 1580 0 1725 165 51 38 chr9 11798648 11799018 -106063609 + THE1C LTR MaLR 1 375 0 6028 165 28 5 chr9 11799018 11800448 -106062179 + L1MA3 LINE L1 4843 6305 0 424 223 33 25 chr9 11801314 11801435 -106061192 + L1M4 LINE L1 4103 4224 -1922 273 58 58 0 chr9 11801481 11801533 -106061094 + (TTAA)n Simple_repeat Simple_repeat 4 58 0 201 155 52 0 chr9 11801546 11801604 -106061023 + (TTAA)n Simple_repeat Simple_repeat 1 61 0 1057 244 117 22 chr9 11801644 11801711 -106060916 + L1M4 LINE L1 4280 4339 -1807 11821 35 2 1 chr9 11801711 11803926 -106058701 + L1PA4 LINE L1 3928 6152 -3 1057 244 117 22 chr9 11803926 11804187 -106058440 + L1M4 LINE L1 4339 4574 -1572 2466 129 3 3 chr9 11804187 11804551 -106058076 + THE1B LTR MaLR 1 364 0 1057 244 117 22 chr9 11804551 11804724 -106057903 + L1M4 LINE L1 4574 4830 -1316 2143 95 60 0 chr9 11805734 11806019 -106056608 + AluSq SINE Alu 1 302 -11 366 67 0 50 chr9 11806601 11806661 -106055966 - L1PB1 LINE L1 -4 6147 6091 1937 17 0 0 chr9 11806661 11806892 -106055735 - L1P LINE L1 -929 5217 4987 428 38 0 0 chr9 11806892 11806945 -106055682 + L1PA6 LINE L1 6096 6148 -6 2321 187 106 0 chr9 11806966 11807420 -106055207 - L1PB3 LINE L1 -60 6810 6309 11404 125 87 72 chr9 11807422 11808351 -106054276 - L1PB3 LINE L1 -3418 3444 2530 2386 75 3 7 chr9 11808351 11808658 -106053969 - AluY SINE Alu -4 307 2 11404 125 87 72 chr9 11808658 11809032 -106053595 - L1PB3 LINE L1 -4332 2530 2163 1060 78 0 14 chr9 11809032 11809173 -106053454 + AluY SINE Alu 158 296 -15 11404 125 87 72 chr9 11809173 11810495 -106052132 - L1PB3 LINE L1 -4699 2163 636 1153 147 10 5 chr9 11810497 11810694 -106051933 - L1PB3 LINE L1 -6663 200 3 23 54 0 0 chr9 11810766 11810803 -106051824 + AT_rich Low_complexity Low_complexity 1 37 0 180 350 80 29 chr9 11810905 11811042 -106051585 - L3 LINE CR1 -9 1568 1425 239 316 35 18 chr9 11811712 11811826 -106050801 - MLT1I LTR MaLR -16 393 278 21 0 0 0 chr9 11811986 11812007 -106050620 + AT_rich Low_complexity Low_complexity 1 21 0 2027 154 13 34 chr9 11813152 11813534 -106049093 - THE1C LTR MaLR 0 375 2 198 103 0 0 chr9 11813847 11813876 -106048751 + (TA)n Simple_repeat Simple_repeat 2 30 0 2466 49 16 7 chr9 11814263 11814569 -106048058 + AluY SINE Alu 1 309 -2 235 322 11 11 chr9 11814766 11814853 -106047774 - L2 LINE L2 0 3313 3227 1126 205 20 12 chr9 11816653 11816907 -106045720 - Tigger1 DNA MER2_type 0 2418 2163 2356 185 108 1 chr9 11817062 11818715 -106043912 - SATR1 Satellite Satellite -2 1829 1 221 250 11 53 chr9 11818734 11818922 -106043705 + (TAA)n Simple_repeat Simple_repeat 1 180 0 1994 199 95 26 chr9 11819005 11820035 -106042592 + SATR1 Satellite Satellite 1 1101 -18 2059 201 113 12 chr9 11820062 11821656 -106040971 + SATR1 Satellite Satellite 1 1755 -208 3611 164 6 30 chr9 11821661 11822369 -106040258 - Tigger1 DNA MER2_type -288 2130 1440 7518 98 6 11 chr9 11822378 11823427 -106039200 - HERVL LTR ERVL 0 5654 4611 1325 295 41 16 chr9 11823528 11824156 -106038471 - L1P LINE L1 -2923 3223 2580 21 0 0 0 chr9 11824965 11824986 -106037641 + AT_rich Low_complexity Low_complexity 1 21 0 5719 110 3 34 chr9 11825307 11826228 -106036399 - L1PA11 LINE L1 0 6174 5302 23 54 0 0 chr9 11826280 11826317 -106036310 + AT_rich Low_complexity Low_complexity 1 37 0 476 245 13 40 chr9 11826479 11826630 -106035997 + L1ME2 LINE L1 5952 6098 -66 686 167 12 24 chr9 11826959 11827127 -106035500 + CT-rich Low_complexity Low_complexity 4 169 0 26 50 0 0 chr9 11827163 11827203 -106035424 + AT_rich Low_complexity Low_complexity 1 40 0 21 36 0 0 chr9 11827262 11827290 -106035337 + AT_rich Low_complexity Low_complexity 1 28 0 9221 30 0 10 chr9 11827643 11829535 -106033092 - L1PA4 LINE L1 0 6155 4275 26 0 0 0 chr9 11829991 11830017 -106032610 + AT_rich Low_complexity Low_complexity 1 26 0 5041 183 41 22 chr9 11831499 11833257 -106029370 + L1MA9 LINE L1 4495 6292 -20 1589 191 32 0 chr9 11834471 11834754 -106027873 - AluJb SINE Alu -5 307 16 209 128 0 26 chr9 11834835 11834874 -106027753 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 2482 59 0 3 chr9 11834981 11835284 -106027343 - AluY SINE Alu -9 302 1 24 67 0 0 chr9 11835538 11835583 -106027044 + AT_rich Low_complexity Low_complexity 1 45 0 298 306 119 15 chr9 11835646 11835780 -106026847 + MIR SINE MIR 57 204 -58 196 346 37 12 chr9 11838792 11838873 -106023754 + MIR SINE MIR 68 150 -58 312 330 27 0 chr9 11839996 11840108 -106022519 + MIR SINE MIR 36 150 -112 219 69 0 0 chr9 11840713 11840742 -106021885 + (TTCTCC)n Simple_repeat Simple_repeat 3 31 0 302 232 14 0 chr9 11841262 11841331 -106021296 - LTR16A LTR ERVL 0 450 381 296 345 30 71 chr9 11841375 11841572 -106021055 - LTR16A LTR ERVL -181 269 81 405 345 92 25 chr9 11841762 11842199 -106020428 - ERVL LTR ERVL -382 5382 4917 866 213 96 5 chr9 11842476 11842664 -106019963 + Tigger7 DNA MER2_type 24 228 -2259 994 362 55 34 chr9 11843223 11843727 -106018900 - ERVL LTR ERVL -1861 3903 3411 2153 152 5 24 chr9 11843727 11844109 -106018518 - THE1C LTR MaLR 0 375 1 9849 123 18 31 chr9 11844109 11845709 -106016918 - THE1C-int LTR MaLR 0 1580 1 2452 127 5 11 chr9 11845709 11846086 -106016541 - THE1C LTR MaLR 0 375 1 994 362 55 34 chr9 11846086 11846653 -106015974 - ERVL LTR ERVL -2352 3412 2736 559 234 6 51 chr9 11846787 11846945 -106015682 + MLT1A1 LTR MaLR 1 151 -214 643 309 32 12 chr9 11846958 11847207 -106015420 - ERVL LTR ERVL -3002 1994 1741 471 348 82 49 chr9 11847282 11847610 -106015017 - ERVL LTR ERVL -3415 1581 1243 1221 291 78 13 chr9 11847646 11848097 -106014530 - ERVL LTR ERVL -3831 1165 686 765 295 82 21 chr9 11848318 11848698 -106013929 - ERVL LTR ERVL -4593 403 1 353 337 95 19 chr9 11848773 11849037 -106013590 - LTR16A LTR ERVL -89 361 78 350 292 8 54 chr9 11849095 11849225 -106013402 - L2 LINE L2 -6 3307 3184 186 429 97 9 chr9 11849442 11849773 -106012854 - L2 LINE L2 -384 2930 2571 385 239 93 133 chr9 11850722 11851023 -106011604 + MLT1J2 LTR MaLR 83 417 -33 45 27 0 27 chr9 11851023 11851080 -106011547 + AT_rich Low_complexity Low_complexity 1 57 -15 1989 92 0 86 chr9 11851080 11851384 -106011243 - AluSq SINE Alu -35 278 1 45 27 0 27 chr9 11851384 11851400 -106011227 + AT_rich Low_complexity Low_complexity 57 72 0 4713 198 91 8 chr9 11852867 11853809 -106008818 - LTR28 LTR ERV1 0 1020 1 1738 172 158 11 chr9 11856000 11856373 -106006254 - MSTA LTR MaLR 0 428 1 8272 153 27 52 chr9 11856373 11857626 -106005001 - MSTA-int LTR MaLR 0 1580 374 2214 117 3 13 chr9 11857626 11857942 -106004685 + AluSp SINE Alu 1 313 0 8272 153 27 52 chr9 11857942 11858306 -106004321 - MSTA-int LTR MaLR -1206 374 3 1806 181 112 20 chr9 11858308 11858700 -106003927 - MSTA LTR MaLR 0 428 1 240 175 12 25 chr9 11859111 11859191 -106003436 + (TA)n Simple_repeat Simple_repeat 2 80 0 75 57 0 0 chr9 11859571 11859695 -106002932 + AT_rich Low_complexity Low_complexity 1 124 0 250 227 193 85 chr9 11860655 11860831 -106001796 - MER112 DNA MER1_type -65 195 1 23 92 0 0 chr9 11862044 11862109 -106000518 + AT_rich Low_complexity Low_complexity 1 65 0 436 183 0 0 chr9 11862128 11862199 -106000428 - AluJ/FLAM SINE Alu -230 82 12 22 0 0 0 chr9 11862395 11862417 -106000210 + AT_rich Low_complexity Low_complexity 1 22 0 759 262 33 19 chr9 11868910 11869120 -105993507 - MIR SINE MIR -28 234 22 2345 94 0 0 chr9 11869702 11870001 -105992626 + AluSx SINE Alu 1 299 -13 2207 146 22 0 chr9 11870537 11870893 -105991734 + THE1B LTR MaLR 1 364 0 10390 120 12 27 chr9 11870893 11872498 -105990129 + THE1B-int LTR MaLR 1 1580 0 2132 166 22 0 chr9 11872498 11872854 -105989773 + THE1B LTR MaLR 1 364 0 1413 131 0 38 chr9 11872962 11873198 -105989429 - MER30 DNA MER1_type 0 230 4 22 56 0 0 chr9 11874748 11874784 -105987843 + AT_rich Low_complexity Low_complexity 1 36 0 2364 93 0 0 chr9 11875206 11875508 -105987119 + AluSc SINE Alu 1 302 -7 295 315 148 0 chr9 11876892 11877000 -105985627 - L2 LINE L2 -33 3239 3116 24 0 0 0 chr9 11877866 11877890 -105984737 + AT_rich Low_complexity Low_complexity 1 24 0 182 319 0 0 chr9 11878128 11878175 -105984452 + MIR SINE MIR 98 144 -64 1003 136 0 26 chr9 11878178 11878360 -105984267 + AluSg/x SINE Alu 135 312 0 208 294 130 11 chr9 11878362 11878454 -105984173 + MIR SINE MIR 136 238 -24 21 89 0 0 chr9 11880285 11880341 -105982286 + AT_rich Low_complexity Low_complexity 1 56 0 381 250 0 0 chr9 11880467 11880555 -105982072 - ERVL LTR ERVL -143 5621 5534 3746 222 63 20 chr9 11880628 11881250 -105981377 - ERVL LTR ERVL -340 5424 4755 2449 212 11 0 chr9 11881250 11881717 -105980910 - MER70A LTR ERVL 0 472 1 3746 222 63 20 chr9 11881717 11881935 -105980692 - ERVL LTR ERVL -1009 4755 4548 584 292 43 11 chr9 11881941 11882175 -105980452 - ERVL LTR ERVL -4901 863 549 6360 183 225 35 chr9 11882175 11883649 -105978978 - MER52A LTR ERV1 0 1755 1 793 301 9 0 chr9 11883649 11883862 -105978765 - ERVL LTR ERVL -5212 552 338 362 163 35 12 chr9 11883947 11884033 -105978594 - L1MCc LINE L1 -6309 114 27 24 53 0 0 chr9 11884395 11884433 -105978194 + AT_rich Low_complexity Low_complexity 1 38 0 3122 113 84 63 chr9 11884970 11885589 -105977038 - L1PB3 LINE L1 0 6154 5523 347 176 17 13 chr9 11885595 11885697 -105976930 + L1M2 LINE L1 5382 5484 -667 2458 65 0 7 chr9 11887395 11887701 -105974926 - AluY SINE Alu -7 304 1 23 54 0 0 chr9 11887842 11887879 -105974748 + AT_rich Low_complexity Low_complexity 1 37 0 462 251 0 0 chr9 11887921 11888084 -105974543 + (CATATA)n Simple_repeat Simple_repeat 5 167 0 387 268 0 0 chr9 11888068 11888225 -105974402 + (TA)n Simple_repeat Simple_repeat 1 157 0 * 656 255 43 64 chr9 11888317 11888736 -105973891 + Charlie1 DNA MER1_type 2343 2752 -9 21 57 0 0 chr9 11889237 11889272 -105973355 + AT_rich Low_complexity Low_complexity 1 35 0 535 159 254 22 chr9 11889894 11890032 -105972595 + HERVK22 LTR ERVK 625 794 -6043 * 34122 87 5 2 chr9 11890015 11894525 -105968102 + HERVK22 LTR ERVK 2314 6837 0 2267 174 65 26 chr9 11894525 11895015 -105967612 + LTR22 LTR ERVK 1 509 0 7148 251 30 28 chr9 11895015 11897550 -105965077 - L1M4 LINE L1 -1357 5025 2485 2076 147 45 14 chr9 11897550 11897903 -105964724 + THE1B LTR MaLR 1 364 0 7148 251 30 28 chr9 11897903 11898129 -105964498 - L1M4 LINE L1 -3897 2485 2261 * 7209 194 33 41 chr9 11898127 11898476 -105964151 - L1M4 LINE L1 -4485 1899 1549 1049 244 13 13 chr9 11898476 11898714 -105963913 - MER8 DNA MER2_type 0 239 2 7209 194 33 41 chr9 11898714 11899400 -105963227 - L1M4 LINE L1 -4835 1549 859 12724 44 0 5 chr9 11899400 11901748 -105960879 - L1PA4 LINE L1 -3 6152 3812 7209 194 33 41 chr9 11901748 11902461 -105960166 - L1M4 LINE L1 -5525 859 163 30 45 0 0 chr9 11902663 11902707 -105959920 + AT_rich Low_complexity Low_complexity 1 44 0 22 0 0 30 chr9 11903306 11903319 -105959308 + AT_rich Low_complexity Low_complexity 1 13 -19 2415 78 3 0 chr9 11903319 11903614 -105959013 - AluSp SINE Alu -17 296 1 22 0 0 30 chr9 11903614 11903633 -105958994 + AT_rich Low_complexity Low_complexity 13 32 0 41 93 0 0 chr9 11903757 11903875 -105958752 + AT_rich Low_complexity Low_complexity 1 118 0 322 289 122 20 chr9 11904216 11904413 -105958214 - L1M4 LINE L1 -1717 4429 4213 2180 247 29 43 chr9 11904441 11906063 -105956564 + L1MC2 LINE L1 7 1400 -4851 4423 235 64 21 chr9 11906065 11908503 -105954124 + L1MC2 LINE L1 4086 6615 -9 1952 106 8 0 chr9 11908771 11909035 -105953592 - AluSx SINE Alu -36 276 11 25 31 0 0 chr9 11909045 11909077 -105953550 + AT_rich Low_complexity Low_complexity 1 32 0 28 29 0 0 chr9 11909134 11909169 -105953458 + AT_rich Low_complexity Low_complexity 1 35 0 307 291 82 38 chr9 11909312 11909470 -105953157 - L2 LINE L2 -1 3312 3148 360 324 52 0 chr9 11909985 11910121 -105952506 - L2 LINE L2 -231 3082 2940 353 320 77 17 chr9 11910138 11910319 -105952308 - L2 LINE L2 -511 2803 2612 721 272 14 115 chr9 11910325 11910811 -105951816 - LTR16B LTR ERVL 0 464 28 270 278 0 9 chr9 11910822 11910930 -105951697 - L1MA3 LINE L1 0 6305 6199 * 479 157 25 9 chr9 11910877 11910990 -105951637 + L1MA5 LINE L1 5826 5946 -241 284 321 53 8 chr9 11911019 11911150 -105951477 - L2 LINE L2 -710 2604 2468 43 56 0 0 chr9 11911642 11911713 -105950914 + AT_rich Low_complexity Low_complexity 1 71 0 1040 157 12 0 chr9 11911901 11912067 -105950560 - AluSg/x SINE Alu -15 297 130 750 201 13 0 chr9 11912207 11912356 -105950271 + FRAM SINE Alu 10 160 -16 1037 184 8 3 chr9 11912461 11912678 -105949949 - L1MDa LINE L1 -3814 2726 2511 427 256 138 0 chr9 11913030 11913190 -105949437 + L2 LINE L2 487 668 -2646 354 332 31 62 chr9 11913507 11913733 -105948894 + HAL1 LINE L1 712 930 -1577 1828 181 39 16 chr9 11913968 11914354 -105948273 + L1MA9 LINE L1 5435 5829 -483 1330 261 59 50 chr9 11914474 11915136 -105947491 + L1ME2 LINE L1 5457 6124 -40 37 62 0 0 chr9 11915136 11915201 -105947426 + AT_rich Low_complexity Low_complexity 1 65 0 694 292 74 3 chr9 11915319 11915617 -105947010 + HAL1 LINE L1 1459 1777 -730 515 329 31 45 chr9 11915621 11915913 -105946714 + L2 LINE L2 2856 3143 -170 2076 163 28 3 chr9 11915913 11916268 -105946359 - THE1B LTR MaLR 0 364 1 8900 126 32 82 chr9 11916268 11917931 -105944696 - THE1B-int LTR MaLR 0 1580 1 2118 145 22 6 chr9 11917931 11918289 -105944338 - THE1B LTR MaLR 0 364 1 21 57 0 0 chr9 11918296 11918331 -105944296 + AT_rich Low_complexity Low_complexity 1 35 0 201 307 80 0 chr9 11918451 11918526 -105944101 + L2 LINE L2 3229 3309 -4 186 315 0 55 chr9 11919444 11919517 -105943110 + MIR3 SINE MIR 97 165 -43 3652 201 21 52 chr9 11919865 11919945 -105942682 - L1MB1 LINE L1 -1 6167 6086 2347 153 32 25 chr9 11919945 11920376 -105942251 + Tigger2a DNA MER2_type 1 434 0 3652 201 21 52 chr9 11920376 11921118 -105941509 - L1MB1 LINE L1 -82 6086 5368 2520 60 0 0 chr9 11921118 11921420 -105941207 - AluY SINE Alu -9 302 1 3652 201 21 52 chr9 11921420 11921549 -105941078 - L1MB1 LINE L1 -800 5368 5237 499 171 0 0 chr9 11921580 11921656 -105940971 - THE1-int LTR MaLR -454 1126 1051 2122 155 80 6 chr9 11921657 11922018 -105940609 - MSTA LTR MaLR -38 390 3 8531 170 34 16 chr9 11922020 11923641 -105938986 - MSTA-int LTR MaLR 0 1651 2 2056 126 102 42 chr9 11923642 11923683 -105938944 - MSTA LTR MaLR 0 428 391 2071 142 3 0 chr9 11923683 11923986 -105938641 + AluSx SINE Alu 1 304 -8 2056 126 102 42 chr9 11923986 11924348 -105938279 - MSTA LTR MaLR -37 391 1 7972 218 42 10 chr9 11924348 11926456 -105936171 - L1MB1 LINE L1 -900 5246 3073 3929 165 17 4 chr9 11926540 11927262 -105935365 - L1MA3 LINE L1 -212 6093 5363 2917 171 6 4 chr9 11927262 11927759 -105934868 + Tigger1 DNA MER2_type 1921 2418 0 21 57 0 0 chr9 11927863 11927898 -105934729 + AT_rich Low_complexity Low_complexity 1 35 0 2210 224 67 39 chr9 11928111 11928800 -105933827 - L1MC3 LINE L1 -1454 6331 5624 754 209 175 7 chr9 11928805 11929122 -105933505 - L1MC3 LINE L1 -743 5403 5084 3613 156 95 19 chr9 11929268 11930036 -105932591 + LTR1B LTR ERV1 1 826 0 1563 197 8 64 chr9 11930040 11930416 -105932211 + MLT1B LTR MaLR 4 358 -32 1564 206 20 23 chr9 11930677 11931021 -105931606 + MER2 DNA MER2_type 1 343 -1 453 36 0 0 chr9 11931705 11931760 -105930867 + (TG)n Simple_repeat Simple_repeat 2 56 0 2017 130 7 0 chr9 11932219 11932512 -105930115 - AluSg SINE Alu -15 295 1 344 209 40 54 chr9 11933900 11934048 -105928579 - L1ME4a LINE L1 -3 6398 6253 235 306 65 16 chr9 11934079 11934203 -105928424 - MIR SINE MIR -17 245 116 398 163 0 12 chr9 11934423 11934503 -105928124 + CT-rich Low_complexity Low_complexity 2 80 0 646 179 22 37 chr9 11934503 11934637 -105927990 - FLAM_C SINE Alu -1 132 1 2063 137 0 0 chr9 11935307 11935607 -105927020 - AluSx SINE Alu -12 300 1 181 204 111 0 chr9 11935747 11935801 -105926826 - MER5C DNA MER1_type -1 323 264 33 0 0 0 chr9 11936065 11936098 -105926529 + AT_rich Low_complexity Low_complexity 1 33 0 257 172 30 10 chr9 11936659 11936758 -105925869 + (TA)n Simple_repeat Simple_repeat 1 101 0 26 64 0 0 chr9 11936834 11936881 -105925746 + AT_rich Low_complexity Low_complexity 1 47 0 25 31 0 0 chr9 11938670 11938702 -105923925 + AT_rich Low_complexity Low_complexity 1 32 0 182 114 0 29 chr9 11939560 11939595 -105923032 + (CA)n Simple_repeat Simple_repeat 2 35 0 198 234 16 78 chr9 11940927 11940991 -105921636 + L2 LINE L2 3213 3272 0 201 178 0 0 chr9 11941649 11941694 -105920933 + (TA)n Simple_repeat Simple_repeat 1 45 0 472 264 0 8 chr9 11942463 11942588 -105920039 - L1MA10 LINE L1 -9 6325 6202 254 268 0 0 chr9 11942608 11942664 -105919963 - MER45 DNA AcHobo 0 1581 1526 * 1013 272 53 100 chr9 11942660 11943322 -105919305 - MER45C DNA AcHobo -322 631 1 298 67 44 0 chr9 11943346 11943391 -105919236 + U2 snRNA snRNA 1 47 -141 4517 259 91 65 chr9 11943392 11943692 -105918935 - L1MCa LINE L1 -178 6268 5977 189 0 0 0 chr9 11943692 11943713 -105918914 + (TA)n Simple_repeat Simple_repeat 1 21 0 4517 259 91 65 chr9 11943713 11943822 -105918805 - L1MCa LINE L1 -469 5977 5872 1109 37 0 0 chr9 11943822 11943957 -105918670 - L1PA3 LINE L1 0 6155 6021 4517 259 91 65 chr9 11943957 11945323 -105917304 - L1MCa LINE L1 -574 5872 4544 180 0 0 0 chr9 11945323 11945343 -105917284 + (TTA)n Simple_repeat Simple_repeat 2 21 0 4517 259 91 65 chr9 11945343 11946472 -105916155 - L1MCa LINE L1 -1902 4544 3446 879 103 0 0 chr9 11946472 11946588 -105916039 - AluJb SINE Alu -176 136 21 4517 259 91 65 chr9 11946588 11947962 -105914665 - L1MCa LINE L1 -3000 3446 1611 1999 139 16 0 chr9 11947962 11948279 -105914348 - L1PA15 LINE L1 -17 6148 5827 4517 259 91 65 chr9 11948279 11948353 -105914274 - L1MCa LINE L1 -4835 1611 1540 1942 164 42 14 chr9 11948358 11948748 -105913879 - MLT2A2 LTR ERVL -149 304 1 2268 164 26 55 chr9 11948749 11949200 -105913427 + L1MA9 LINE L1 3720 4157 -1989 2070 134 3 0 chr9 11949200 11949505 -105913122 + AluSx SINE Alu 1 306 -6 2268 164 26 55 chr9 11949505 11949546 -105913081 + L1MA9 LINE L1 4157 4198 -1948 931 144 32 32 chr9 11949570 11949757 -105912870 + L1MA9 LINE L1 5795 5981 -331 258 312 55 0 chr9 11950287 11950396 -105912231 + MER104 DNA Tc2 41 155 -25 22 0 0 0 chr9 11950403 11950425 -105912202 + AT_rich Low_complexity Low_complexity 1 22 0 3107 143 51 11 chr9 11950889 11951457 -105911170 - Tigger3(Golem) DNA MER2_type -48 2981 2391 520 250 0 0 chr9 11951467 11951571 -105911056 - Tigger3(Golem) DNA MER2_type -2925 104 1 292 289 99 8 chr9 11951571 11951692 -105910935 + Charlie1 DNA MER1_type 1793 1924 -837 23 54 0 0 chr9 11952303 11952340 -105910287 + AT_rich Low_complexity Low_complexity 1 37 0 23 54 0 0 chr9 11952395 11952432 -105910195 + AT_rich Low_complexity Low_complexity 1 37 0 208 385 9 0 chr9 11952997 11953106 -105909521 + CT-rich Low_complexity Low_complexity 1 110 0 269 278 41 30 chr9 11955301 11955470 -105907157 + L1MC/D LINE L1 5712 5882 -1926 234 288 0 0 chr9 11956139 11956198 -105906429 - MLT1J2 LTR MaLR -299 151 93 237 119 0 0 chr9 11956208 11956250 -105906377 + (TG)n Simple_repeat Simple_repeat 2 43 0 24 0 0 0 chr9 11956450 11956474 -105906153 + AT_rich Low_complexity Low_complexity 1 24 0 219 346 0 0 chr9 11957538 11957616 -105905011 + MIR SINE MIR 159 236 -26 1247 215 29 0 chr9 11958356 11958447 -105904180 + AluJo SINE Alu 36 123 -189 410 0 0 20 chr9 11958447 11958498 -105904129 + (TAAA)n Simple_repeat Simple_repeat 4 53 0 1247 215 29 0 chr9 11958498 11958652 -105903975 + AluJo SINE Alu 123 288 -24 2052 250 27 22 chr9 11959949 11960844 -105901783 + LTR27 LTR ERV1 1 950 -70 332 206 0 14 chr9 11960896 11960969 -105901658 + LTR28 LTR ERV1 949 1020 0 1167 228 44 35 chr9 11961308 11961754 -105900873 - LTR56 LTR ERV1 0 437 12 1670 214 114 72 chr9 11961873 11961997 -105900630 - L1ME2 LINE L1 -9 6155 6038 3779 132 8 37 chr9 11961997 11962651 -105899976 + MER41B LTR ERV1 1 635 0 1670 214 114 72 chr9 11962651 11963218 -105899409 - L1ME2 LINE L1 -126 6038 5435 192 307 47 39 chr9 11963461 11963588 -105899039 - L2 LINE L2 -916 2398 2271 290 143 76 162 chr9 11964075 11964132 -105898495 + MIR SINE MIR 156 202 -60 2128 112 0 3 chr9 11964132 11964435 -105898192 + AluSx SINE Alu 3 304 -8 290 143 76 162 chr9 11964435 11964482 -105898145 + MIR SINE MIR 202 251 -11 360 299 246 9 chr9 11964678 11964889 -105897738 - MIR SINE MIR 0 262 2 38 61 0 0 chr9 11965742 11965808 -105896819 + AT_rich Low_complexity Low_complexity 1 66 0 256 134 60 0 chr9 11966012 11966079 -105896548 + (TA)n Simple_repeat Simple_repeat 1 71 0 518 0 16 0 chr9 11966079 11966141 -105896486 + (TCTA)n Simple_repeat Simple_repeat 2 64 0 1575 154 113 0 chr9 11966283 11966576 -105896051 + MER44D DNA MER2_type 14 609 0 993 263 146 38 chr9 11966634 11967140 -105895487 + MLT1E1 LTR MaLR 90 650 -4 212 0 36 0 chr9 11968753 11968781 -105893846 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 36 23 0 0 chr9 11970187 11970230 -105892397 + AT_rich Low_complexity Low_complexity 1 43 0 1524 175 7 59 chr9 11970248 11970551 -105892076 - AluJb SINE Alu -23 289 3 226 321 87 98 chr9 11970920 11971288 -105891339 - L2 LINE L2 0 3313 2950 1467 162 68 39 chr9 11971346 11971655 -105890972 - MER44D DNA MER2_type 0 609 22 393 291 82 41 chr9 11972902 11973117 -105889510 - L1M4 LINE L1 -1521 4625 4391 1571 183 3 30 chr9 11973117 11973412 -105889215 + AluJb SINE Alu 1 287 -25 393 291 82 41 chr9 11973412 11973512 -105889115 - L1M4 LINE L1 -1755 4391 4297 3337 243 43 50 chr9 11973570 11974695 -105887932 - L1MC4 LINE L1 -257 7785 6669 416 245 129 68 chr9 11975102 11975824 -105886803 - L1MC4 LINE L1 -1216 6592 5901 6693 229 36 19 chr9 11975826 11977627 -105885000 - Cheshire DNA MER1_type -1 2419 589 1600 204 36 40 chr9 11977627 11978073 -105884554 + L1M4 LINE L1 5290 5733 -451 852 341 66 41 chr9 11978081 11978690 -105883937 + ERVL LTR ERVL 2005 2628 -3136 2331 191 107 31 chr9 11978690 11979298 -105883329 + LTR28 LTR ERV1 1 1313 -395 539 316 73 89 chr9 11979618 11980145 -105882482 + ERVL LTR ERVL 2826 3337 -2427 624 198 32 0 chr9 11980145 11980271 -105882356 + L1PA16 LINE L1 6023 6152 -14 539 316 73 89 chr9 11980271 11980578 -105882049 + ERVL LTR ERVL 3337 3647 -2117 886 201 45 76 chr9 11981016 11981280 -105881347 + L1MA9 LINE L1 5727 5982 -330 1656 147 40 0 chr9 11981297 11981548 -105881079 - Charlie3 DNA MER1_type -2449 261 1 1456 221 135 29 chr9 11981683 11982136 -105880491 + MLT1D LTR MaLR 1 501 -4 2604 215 21 36 chr9 11982143 11982804 -105879823 + L1MC3 LINE L1 7126 7776 -9 321 26 0 0 chr9 11982967 11983005 -105879622 + (CA)n Simple_repeat Simple_repeat 1 38 0 938 265 118 42 chr9 11983248 11983655 -105878972 - LTR38 LTR ERV1 -32 524 87 533 202 0 18 chr9 11984622 11984736 -105877891 + MER104 DNA Tc2 5 116 -64 906 61 0 30 chr9 11984736 11984867 -105877760 - SVA Other Other 0 1386 1260 25 31 0 0 chr9 11984872 11984904 -105877723 + AT_rich Low_complexity Low_complexity 1 32 0 183 304 72 36 chr9 11985001 11985139 -105877488 + MIR SINE MIR 120 262 0 213 39 0 0 chr9 11985309 11985335 -105877292 + (T)n Simple_repeat Simple_repeat 1 26 0 41 93 0 0 chr9 11985793 11985911 -105876716 + AT_rich Low_complexity Low_complexity 1 118 0 1680 66 0 9 chr9 11987905 11988132 -105874495 + L1PA7 LINE L1 5927 6151 -3 2451 212 49 11 chr9 11991669 11992282 -105870345 - L1MD3 LINE L1 -10 7985 7350 225 313 134 0 chr9 11992359 11992471 -105870156 - L1MEc LINE L1 -5076 1320 1194 23 92 0 0 chr9 11992503 11992568 -105870059 + AT_rich Low_complexity Low_complexity 1 65 0 1134 312 124 48 chr9 11992579 11993602 -105869025 - L1MEc LINE L1 -5257 1139 39 2447 272 45 51 chr9 11993800 11994094 -105868533 + L1M4 LINE L1 2739 3033 -3113 917 255 41 52 chr9 11994094 11994463 -105868164 - MLT1A1 LTR MaLR 0 365 1 2447 272 45 51 chr9 11994463 11995742 -105866885 + L1M4 LINE L1 3033 4303 -1843 792 270 27 31 chr9 11995753 11996235 -105866392 + L1M4 LINE L1 4222 4701 -1445 * 11004 236 12 64 chr9 11996230 11998877 -105863750 + L1 LINE L1 12 2519 -5046 3959 161 14 56 chr9 11998866 11999101 -105863526 - L1PA16 LINE L1 -20 6146 5903 * 2139 125 3 0 chr9 11999101 11999406 -105863221 - AluSx SINE Alu -5 307 2 3959 161 14 56 chr9 11999406 11999961 -105862666 - L1PA16 LINE L1 -263 5903 5389 * 4151 223 36 4 chr9 11999958 12000939 -105861688 + L1 LINE L1 4627 5638 -1927 1449 169 58 14 chr9 12000942 12001266 -105861361 - MER61C LTR ERV1 -2 431 1 24639 127 31 36 chr9 12001266 12003544 -105859083 - MER61C-int LTR ERV1 -1 5216 2927 270 0 0 0 chr9 12003544 12003574 -105859053 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2193 97 0 10 chr9 12003576 12003866 -105858761 - AluSp SINE Alu -26 287 1 24639 127 31 36 chr9 12003866 12004582 -105858045 - MER61C-int LTR ERV1 -2291 2926 2208 2285 72 0 0 chr9 12004582 12004872 -105857755 + AluY SINE Alu 11 300 -11 24639 127 31 36 chr9 12004872 12006331 -105856296 - MER61C-int LTR ERV1 -3009 2208 666 1435 254 28 36 chr9 12006329 12006719 -105855908 - MER61C-int LTR ERV1 -4829 388 2 * 1638 184 13 16 chr9 12006719 12007061 -105855566 - MER61C LTR ERV1 0 434 1 2447 187 22 9 chr9 12007061 12007613 -105855014 + L1 LINE L1 5636 6194 -1371 2553 108 6 0 chr9 12007615 12007967 -105854660 + THE1A LTR MaLR 2 355 0 11075 112 10 2 chr9 12007967 12009536 -105853091 + THE1A-int LTR MaLR 1 1580 0 408 114 171 0 chr9 12009536 12009606 -105853021 + THE1A LTR MaLR 1 82 -273 1075 179 12 64 chr9 12009610 12009861 -105852766 + MLT1B LTR MaLR 125 362 -28 273 57 0 0 chr9 12009863 12009898 -105852729 + (T)n Simple_repeat Simple_repeat 1 35 0 336 121 52 0 chr9 12009946 12010004 -105852623 + MER61D LTR ERV1 441 501 0 1272 144 43 0 chr9 12010029 12010237 -105852390 - MER30 DNA MER1_type 0 230 14 2222 118 0 0 chr9 12010258 12010564 -105852063 - AluSg SINE Alu -4 306 1 1801 256 81 18 chr9 12010571 12011450 -105851177 - L1M4c LINE L1 -4180 2466 1443 449 279 25 0 chr9 12011517 12011639 -105850988 - L1M4c LINE L1 -5593 949 825 13160 245 61 22 chr9 12012328 12012898 -105849729 + L1PA15 LINE L1 1 547 -6269 2169 80 14 3 chr9 12012898 12013186 -105849441 - AluSc SINE Alu -18 291 1 13160 245 61 22 chr9 12013186 12018974 -105843653 + L1PA15 LINE L1 547 6700 -116 17512 42 1 5 chr9 12019150 12021351 -105841276 - L1P LINE L1 -963 5183 2992 327 385 21 17 chr9 12021686 12021920 -105840707 - L2 LINE L2 -853 2461 2227 293 303 85 66 chr9 12022255 12022466 -105840161 + MLT1J LTR MaLR 223 437 -74 188 343 28 56 chr9 12022666 12022774 -105839853 - L2 LINE L2 -19 3253 3149 222 358 138 22 chr9 12023059 12023414 -105839213 + L2 LINE L2 1891 2286 -1028 25 31 0 0 chr9 12025269 12025301 -105837326 + AT_rich Low_complexity Low_complexity 1 32 0 704 175 0 111 chr9 12025308 12025479 -105837148 - FRAM SINE Alu -14 152 1 1187 205 5 0 chr9 12025528 12025738 -105836889 - AluJo SINE Alu -101 211 1 1545 179 0 30 chr9 12027778 12028069 -105834558 + AluJb SINE Alu 23 305 0 739 293 150 26 chr9 12028164 12028591 -105834036 + MLT1H LTR MaLR 55 534 -15 362 39 19 0 chr9 12028608 12028660 -105833967 + (TG)n Simple_repeat Simple_repeat 2 54 0 23 0 0 0 chr9 12028767 12028790 -105833837 + AT_rich Low_complexity Low_complexity 1 23 0 34 55 0 0 chr9 12029844 12029899 -105832728 + AT_rich Low_complexity Low_complexity 1 55 0 186 306 74 0 chr9 12029945 12030053 -105832574 - MIR SINE MIR -50 212 97 235 222 56 0 chr9 12030726 12030780 -105831847 - L2 LINE L2 0 3313 3257 1794 158 50 7 chr9 12031070 12031244 -105831383 - AluSx SINE Alu -2 310 116 348 43 0 0 chr9 12031244 12031290 -105831337 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 1794 158 50 7 chr9 12031290 12031412 -105831215 - AluSx SINE Alu -196 116 1 1104 159 56 0 chr9 12031455 12031650 -105830977 - MER61E LTR ERV1 -22 547 342 250 217 14 43 chr9 12031660 12031729 -105830898 - MER61E LTR ERV1 -404 165 99 * 499 250 23 15 chr9 12031719 12031851 -105830776 - LTR25 LTR ERV1 -414 380 248 295 203 8 136 chr9 12031838 12031956 -105830671 - MER61E LTR ERV1 -465 104 2 * 3060 230 64 39 chr9 12031971 12032939 -105829688 - MER61E-int LTR ERV1 -7 6989 5998 5467 180 29 8 chr9 12032944 12033556 -105829071 + L1MA3 LINE L1 4823 5421 -884 2862 156 37 89 chr9 12033556 12034285 -105828342 - LTR8 LTR ERV1 0 691 1 5467 180 29 8 chr9 12034285 12035123 -105827504 + L1MA3 LINE L1 5421 6305 0 1290 256 95 72 chr9 12035171 12035756 -105826871 + L1ME2 LINE L1 4713 5283 -881 216 0 0 0 chr9 12035756 12035780 -105826847 + (TG)n Simple_repeat Simple_repeat 2 25 0 1290 256 95 72 chr9 12035780 12036607 -105826020 + L1ME2 LINE L1 5283 6162 -2 5303 253 27 21 chr9 12036811 12038256 -105824371 + LTR25-int LTR ERV1 296 1749 -5247 1795 273 15 35 chr9 12038287 12038830 -105823797 + LTR25-int LTR ERV1 2146 2677 -6242 4796 203 5 0 chr9 12038858 12039697 -105822930 + LTR25-int LTR ERV1 3917 4759 -2332 582 222 24 77 chr9 12039700 12039948 -105822679 + L1M4 LINE L1 3262 3496 -2650 1583 163 43 29 chr9 12039948 12040298 -105822329 + L1MA7 LINE L1 5936 6290 -1 216 0 0 0 chr9 12040444 12040468 -105822159 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 586 256 123 10 chr9 12040470 12040673 -105821954 + L1M4 LINE L1 3502 3727 -2419 1470 207 38 90 chr9 12040681 12041027 -105821600 + L1M4 LINE L1 4504 4816 -1330 1806 169 4 4 chr9 12041027 12041305 -105821322 + AluJb SINE Alu 3 280 -32 1470 207 38 90 chr9 12041305 12041479 -105821148 + L1M4 LINE L1 4816 4997 -1149 1383 178 62 38 chr9 12041489 12041583 -105821044 - MER44D DNA MER2_type -1883 608 518 303 93 0 0 chr9 12041583 12041626 -105821001 + (TG)n Simple_repeat Simple_repeat 2 44 0 1383 178 62 38 chr9 12041626 12041851 -105820776 - MER44D DNA MER2_type -1973 518 11 444 237 13 32 chr9 12041865 12042021 -105820606 + L1M4 LINE L1 5008 5160 -986 345 286 0 0 chr9 12044101 12044199 -105818428 - L1M4 LINE L1 -1432 4714 4617 2207 216 13 11 chr9 12044242 12044771 -105817856 - L1MB3 LINE L1 -2 6181 5652 5588 112 10 19 chr9 12044773 12045638 -105816989 - L1PA10 LINE L1 -4 6164 5307 1231 257 117 8 chr9 12045639 12046207 -105816420 - L1MB3 LINE L1 -745 5401 4784 2403 167 76 25 chr9 12046207 12046691 -105815936 + LTR22 LTR ERVK 1 509 0 3368 131 16 0 chr9 12046691 12047194 -105815433 + HERVK22 LTR ERVK 1 511 -6326 1400 203 0 4 chr9 12097332 12097573 -105765054 + L1P3 LINE L1 10 249 -6212 2150 111 3 35 chr9 12097737 12098052 -105764575 - AluSx SINE Alu -7 305 1 2251 112 3 0 chr9 12098128 12098433 -105764194 - AluSx SINE Alu -6 306 1 437 181 0 0 chr9 12098764 12098836 -105763791 - FLAM_A SINE Alu -18 124 53 2296 67 0 0 chr9 12098939 12099259 -105763368 + AluY SINE Alu 1 320 0 1299 105 0 28 chr9 12099259 12099440 -105763187 + AluSg/x SINE Alu 132 307 -5 2371 85 3 0 chr9 12100605 12100899 -105761728 - AluSp SINE Alu -16 297 3 2416 94 13 0 chr9 12101075 12101383 -105761244 - AluSx SINE Alu 0 312 1 1567 118 0 5 chr9 12101662 12101882 -105760745 - AluSg/x SINE Alu -2 308 90 208 139 0 0 chr9 12103747 12103783 -105758844 + (TAAAAA)n Simple_repeat Simple_repeat 2 37 0 198 0 0 0 chr9 12104450 12104472 -105758155 + (T)n Simple_repeat Simple_repeat 1 22 0 22 35 0 0 chr9 12105459 12105488 -105757139 + AT_rich Low_complexity Low_complexity 1 29 0 285 307 86 28 chr9 12105506 12105796 -105756831 - L1MC/D LINE L1 -1929 5879 5573 42 0 0 0 chr9 12106082 12106124 -105756503 + AT_rich Low_complexity Low_complexity 1 42 0 722 332 92 14 chr9 12106206 12106920 -105755707 + L1M4 LINE L1 3840 4609 -1537 285 343 62 48 chr9 12107040 12107349 -105755278 + L1MEc LINE L1 92 404 -5992 204 135 0 0 chr9 12107441 12107478 -105755149 + (CCA)n Simple_repeat Simple_repeat 2 38 0 254 322 78 0 chr9 12107513 12107628 -105754999 + L1MEc LINE L1 499 622 -5774 29388 111 13 43 chr9 12108546 12114884 -105747743 - L1PA7 LINE L1 -5 6464 154 303 183 56 14 chr9 12114884 12114955 -105747672 - MER31A LTR ERV1 -332 153 80 29388 111 13 43 chr9 12114955 12115105 -105747522 - L1PA7 LINE L1 -6315 154 1 32 26 0 0 chr9 12115230 12115269 -105747358 + AT_rich Low_complexity Low_complexity 1 39 0 744 222 66 37 chr9 12115728 12115971 -105746656 - MER31A LTR ERV1 -235 250 1 664 249 51 30 chr9 12115972 12116001 -105746626 - MER31A-int LTR ERV1 -21 4915 4888 180 111 0 0 chr9 12116001 12116028 -105746599 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 664 249 51 30 chr9 12116028 12116235 -105746392 - MER31A-int LTR ERV1 -48 4888 4674 269 279 44 0 chr9 12118188 12118256 -105744371 - MER31A-int LTR ERV1 -4674 4245 4175 261 250 69 52 chr9 12118547 12118663 -105743964 - LTR57-int LTR ERVL -3196 2147 2030 24 32 0 0 chr9 12120252 12120283 -105742344 + AT_rich Low_complexity Low_complexity 1 31 0 760 207 89 43 chr9 12120500 12120702 -105741925 - MLT1D LTR MaLR 0 618 335 400 353 115 12 chr9 12121444 12121696 -105740931 + L2 LINE L2 2995 3272 0 278 244 89 49 chr9 12122251 12122374 -105740253 - MIR SINE MIR -115 147 20 22 35 0 0 chr9 12122526 12122555 -105740072 + AT_rich Low_complexity Low_complexity 1 29 0 1042 169 0 12 chr9 12122749 12122921 -105739706 + AluJo SINE Alu 1 170 -142 342 268 41 21 chr9 12123385 12123482 -105739145 - MIR3 SINE MIR -49 159 61 1820 216 36 78 chr9 12123668 12124246 -105738381 - MLT2B3 LTR ERVL 0 554 1 22 35 0 0 chr9 12124740 12124769 -105737858 + AT_rich Low_complexity Low_complexity 1 29 0 2516 127 63 97 chr9 12126387 12127013 -105735614 - MER4B LTR ERV1 0 766 1 530 193 18 18 chr9 12127052 12127166 -105735461 - FLAM_A SINE Alu -11 131 18 1646 162 51 51 chr9 12127186 12127343 -105735284 + MLT1B LTR MaLR 10 166 -224 1710 142 4 4 chr9 12127343 12127603 -105735024 + AluSq SINE Alu 39 298 -15 1646 162 51 51 chr9 12127603 12127796 -105734831 + MLT1B LTR MaLR 165 360 -30 1040 222 143 101 chr9 12127846 12128561 -105734066 + LTR1B LTR ERV1 82 826 0 2197 149 22 3 chr9 12128885 12129255 -105733372 + LTR8A LTR ERV1 1 377 -350 4220 121 49 49 chr9 12129256 12130010 -105732617 - LTR1 LTR ERV1 0 785 32 1201 195 47 58 chr9 12130023 12130367 -105732260 + LTR8A LTR ERV1 375 714 -13 2031 287 51 24 chr9 12130655 12130691 -105731936 + L1ME1 LINE L1 150 184 -6212 318 26 0 0 chr9 12130691 12130730 -105731897 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2031 287 51 24 chr9 12130730 12131518 -105731109 + L1ME1 LINE L1 184 996 -5400 313 250 81 48 chr9 12131522 12131646 -105730981 - L1MEc LINE L1 -5034 1350 1223 343 218 20 10 chr9 12131656 12131757 -105730870 - L1MEc LINE L1 -5227 1336 1235 258 250 118 80 chr9 12131874 12132390 -105730237 + L1ME1 LINE L1 2898 3433 -2782 951 253 152 62 chr9 12132605 12132790 -105729837 + L1M4 LINE L1 1 168 -6374 3550 179 25 15 chr9 12132790 12133510 -105729117 - LTR8A LTR ERV1 0 727 1 951 253 152 62 chr9 12133510 12133823 -105728804 + L1M4 LINE L1 168 544 -5998 331 248 104 24 chr9 12133830 12133955 -105728672 + MLT1B LTR MaLR 404 538 -4 247 279 185 71 chr9 12134073 12134327 -105728300 + L1ME1 LINE L1 5094 5376 -839 1044 277 66 7 chr9 12134359 12134781 -105727846 + L1ME1 LINE L1 5479 5925 -310 225 128 0 0 chr9 12135497 12135544 -105727083 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 719 185 31 15 chr9 12135762 12135892 -105726735 - FLAM_C SINE Alu -1 132 1 21 36 0 0 chr9 12135933 12135961 -105726666 + AT_rich Low_complexity Low_complexity 1 28 0 4351 197 25 48 chr9 12135967 12137226 -105725401 - L1MA10 LINE L1 -15 6319 5088 2202 211 40 29 chr9 12137223 12137852 -105724775 + L1MA10 LINE L1 4441 5076 -1070 * 2006 90 60 4 chr9 12138069 12138360 -105724267 + AluY SINE Alu 1 306 0 22 35 0 0 chr9 12138496 12138525 -105724102 + AT_rich Low_complexity Low_complexity 1 29 0 2328 138 11 3 chr9 12138584 12138945 -105723682 + THE1B LTR MaLR 1 364 0 10215 123 37 3 chr9 12138946 12140473 -105722154 + THE1B-int LTR MaLR 2 1580 0 1589 144 25 18 chr9 12140473 12140751 -105721876 + THE1B LTR MaLR 1 280 -84 1400 164 0 0 chr9 12140751 12140965 -105721662 + THE1-int LTR MaLR 938 1151 -429 305 414 55 0 chr9 12142129 12142274 -105720353 + L2 LINE L2 3112 3264 -8 369 93 0 0 chr9 12143271 12143325 -105719302 + (GGAA)n Simple_repeat Simple_repeat 3 56 0 1941 169 107 13 chr9 12143936 12144327 -105718300 + MSTA LTR MaLR 1 428 0 761 268 65 0 chr9 12146815 12147076 -105715551 - MER5C DNA MER1_type -43 281 4 1382 269 75 53 chr9 12148076 12149179 -105713448 + L1ME LINE L1 508 1611 -4469 577 308 40 9 chr9 12149359 12149583 -105713044 + LTR16A LTR ERVL 176 406 -44 311 353 43 27 chr9 12149589 12149889 -105712738 + L1ME LINE L1 2271 2575 -3505 1840 175 51 0 chr9 12149906 12150237 -105712390 - MER7A DNA MER2_type 0 346 1 370 188 0 62 chr9 12150237 12150323 -105712304 - L1MC4 LINE L1 -1347 6695 6614 364 265 0 31 chr9 12150242 12150340 -105712287 + L1MC4 LINE L1 6614 6708 -1334 * 402 304 12 70 chr9 12151332 12151503 -105711124 + MER5B DNA MER1_type 1 161 -17 389 258 52 79 chr9 12151781 12152072 -105710555 - L1ME3 LINE L1 -22 6140 5858 33 66 0 0 chr9 12152108 12152169 -105710458 + AT_rich Low_complexity Low_complexity 1 61 0 411 281 131 70 chr9 12152345 12152767 -105709860 + MLT1H LTR MaLR 114 549 -6 21 57 0 0 chr9 12152882 12152917 -105709710 + AT_rich Low_complexity Low_complexity 1 35 0 374 80 0 0 chr9 12153593 12153643 -105708984 + L1P LINE L1 5123 5172 -974 2330 252 10 0 chr9 12153652 12154248 -105708379 + L1 LINE L1 2253 2854 -3292 1263 309 74 24 chr9 12154251 12154875 -105707752 + MER110-int LTR ERV1 2254 2908 -1739 192 40 0 0 chr9 12155087 12155112 -105707515 + (T)n Simple_repeat Simple_repeat 1 25 0 313 313 47 47 chr9 12155125 12155318 -105707309 + MER110-int LTR ERV1 4410 4605 -42 2219 108 3 3 chr9 12155318 12155624 -105707003 + AluSq SINE Alu 1 306 -7 313 313 47 47 chr9 12155624 12155644 -105706983 + MER110-int LTR ERV1 4604 4623 -24 324 350 110 30 chr9 12155754 12156091 -105706536 + L1ME3 LINE L1 5526 5889 -273 326 368 72 13 chr9 12156195 12156347 -105706280 - L2 LINE L2 -239 3074 2914 194 338 76 25 chr9 12156542 12156699 -105705928 + L2 LINE L2 3149 3313 0 216 200 0 0 chr9 12156820 12156865 -105705762 + (CATATA)n Simple_repeat Simple_repeat 6 50 0 198 407 82 21 chr9 12156883 12157126 -105705501 - L2 LINE L2 -89 3183 2926 41 36 0 0 chr9 12157486 12157541 -105705086 + AT_rich Low_complexity Low_complexity 1 55 0 4057 74 0 0 chr9 12158162 12158689 -105703938 - L1PA7 LINE L1 -3 6151 5625 579 360 20 65 chr9 12158824 12159319 -105703308 + L2 LINE L2 237 709 -2605 763 247 150 30 chr9 12159452 12159760 -105702867 - Charlie1a DNA MER1_type -1084 371 27 357 330 101 9 chr9 12160025 12160243 -105702384 + L3 LINE CR1 1155 1392 -185 25 0 0 0 chr9 12160606 12160631 -105701996 + AT_rich Low_complexity Low_complexity 1 25 0 29 67 0 0 chr9 12161508 12161553 -105701074 + AT_rich Low_complexity Low_complexity 1 45 0 369 225 13 40 chr9 12161577 12161728 -105700899 + (TATAA)n Simple_repeat Simple_repeat 2 148 0 56 67 0 0 chr9 12161833 12161938 -105700689 + AT_rich Low_complexity Low_complexity 1 105 0 536 294 74 69 chr9 12161970 12162190 -105700437 + L1MC4 LINE L1 6702 6926 -1116 1605 193 0 6 chr9 12162190 12162512 -105700115 + L1MA6 LINE L1 5981 6300 0 536 294 74 69 chr9 12162512 12162655 -105699972 + L1MC4 LINE L1 6926 7067 -975 314 314 33 19 chr9 12162890 12163100 -105699527 + L1MC4 LINE L1 7690 7902 -140 245 155 17 0 chr9 12163108 12163166 -105699461 + (TAGA)n Simple_repeat Simple_repeat 2 60 0 268 266 51 25 chr9 12163428 12163507 -105699120 + L2 LINE L2 3228 3308 -5 186 393 9 9 chr9 12165265 12165372 -105697255 + L2 LINE L2 2376 2482 -832 1069 219 81 51 chr9 12165663 12165997 -105696630 + MER2 DNA MER2_type 1 344 0 25 0 0 0 chr9 12166234 12166259 -105696368 + AT_rich Low_complexity Low_complexity 1 25 0 2041 141 3 0 chr9 12167508 12167814 -105694813 + AluSp SINE Alu 1 307 -6 1498 212 68 0 chr9 12168463 12168803 -105693824 + MLT1A1 LTR MaLR 1 363 -2 22 0 0 0 chr9 12168953 12168975 -105693652 + AT_rich Low_complexity Low_complexity 1 22 0 8673 46 2 4 chr9 12169733 12171582 -105691045 + L1PA5 LINE L1 4305 6151 -3 188 207 138 0 chr9 12172313 12172371 -105690256 + L2 LINE L2 2686 2751 -563 719 353 74 30 chr9 12174387 12175184 -105687443 + ERVL LTR ERVL 1944 2747 -2249 7062 199 88 24 chr9 12175415 12176969 -105685658 + MER52A LTR ERV1 1 1755 0 3289 206 62 5 chr9 12177004 12177677 -105684950 - MER44D DNA MER2_type 0 605 22 222 37 0 0 chr9 12178349 12178376 -105684251 + (A)n Simple_repeat Simple_repeat 1 27 0 269 345 9 9 chr9 12178959 12179069 -105683558 + ERVL LTR ERVL 5216 5325 -439 207 0 0 0 chr9 12179141 12179164 -105683463 + (TG)n Simple_repeat Simple_repeat 2 24 0 23 33 0 0 chr9 12179165 12179195 -105683432 + AT_rich Low_complexity Low_complexity 1 30 0 9414 210 70 32 chr9 12179216 12182086 -105680541 - L1M LINE L1 -769 5377 2447 27 0 0 0 chr9 12182086 12182113 -105680514 + AT_rich Low_complexity Low_complexity 1 27 0 328 360 23 29 chr9 12182121 12182293 -105680334 - L1M3d LINE L1 -5509 382 212 2903 299 51 29 chr9 12182365 12184821 -105677806 - L1M1 LINE L1 -3873 2278 6 423 301 57 17 chr9 12184853 12185029 -105677598 - LTR33 LTR ERVL -10 511 329 1155 274 95 16 chr9 12185089 12185520 -105677107 + MLT1D LTR MaLR 39 503 -2 21 57 0 0 chr9 12187159 12187194 -105675433 + AT_rich Low_complexity Low_complexity 1 35 0 704 325 54 31 chr9 12187384 12187738 -105674889 + L2 LINE L2 2949 3310 -3 270 297 42 8 chr9 12188042 12188160 -105674467 - L2 LINE L2 -1449 1865 1744 284 62 0 21 chr9 12188558 12188606 -105674021 + (TTTC)n Simple_repeat Simple_repeat 2 48 0 1006 128 12 0 chr9 12188620 12188792 -105673835 + CT-rich Low_complexity Low_complexity 3 176 0 2191 91 0 32 chr9 12188794 12189102 -105673525 - AluSc SINE Alu -10 299 2 25 0 0 0 chr9 12189504 12189529 -105673098 + AT_rich Low_complexity Low_complexity 1 25 0 2490 114 34 42 chr9 12189529 12190001 -105672626 - L1MA3 LINE L1 0 7724 7257 448 123 0 0 chr9 12190001 12190074 -105672553 - L1MA3 LINE L1 -914 6810 6738 5667 179 46 9 chr9 12190090 12191275 -105671352 - L1MA3 LINE L1 -1263 6302 5074 * 15103 175 32 25 chr9 12191271 12194093 -105668534 - L1MA3 LINE L1 -4715 2850 9 215 372 0 0 chr9 12194857 12194951 -105667676 + GA-rich Low_complexity Low_complexity 2 95 0 25 31 0 0 chr9 12195396 12195428 -105667199 + AT_rich Low_complexity Low_complexity 1 32 0 812 106 0 0 chr9 12196933 12197046 -105665581 - L1P LINE L1 -5442 704 592 11327 57 9 1 chr9 12197046 12199261 -105663366 + L1PA5 LINE L1 3932 6154 0 312 280 80 8 chr9 12199337 12199462 -105663165 - MLT1I LTR MaLR -267 142 9 325 360 52 28 chr9 12199932 12200182 -105662445 + L1ME4a LINE L1 5639 5894 -227 669 279 198 13 chr9 12200751 12201312 -105661315 - LTR50 LTR ERVL -42 753 50 21 36 0 0 chr9 12201472 12201500 -105661127 + AT_rich Low_complexity Low_complexity 1 28 0 369 250 0 0 chr9 12201567 12201651 -105660976 - MER94 DNA DNA -39 95 12 2757 186 47 29 chr9 12202551 12203163 -105659464 - L1MD1 LINE L1 -1 6241 5619 32 64 0 13 chr9 12203174 12203200 -105659427 + AT_rich Low_complexity Low_complexity 1 26 -51 252 0 0 0 chr9 12203200 12203228 -105659399 + (CA)n Simple_repeat Simple_repeat 2 29 0 180 0 0 0 chr9 12203227 12203247 -105659380 + (TC)n Simple_repeat Simple_repeat 2 21 0 * 32 64 0 13 chr9 12203228 12203298 -105659329 + AT_rich Low_complexity Low_complexity 26 77 0 703 12 0 0 chr9 12203298 12203382 -105659245 - L1PA4 LINE L1 -3 6152 6069 275 130 19 0 chr9 12203393 12203447 -105659180 + (TA)n Simple_repeat Simple_repeat 1 55 0 360 77 0 0 chr9 12203517 12203569 -105659058 + (TG)n Simple_repeat Simple_repeat 2 53 0 28 29 0 0 chr9 12204281 12204316 -105658311 + AT_rich Low_complexity Low_complexity 1 35 0 231 114 0 0 chr9 12207191 12207226 -105655401 + (TG)n Simple_repeat Simple_repeat 2 36 0 1323 239 28 12 chr9 12207394 12207720 -105654907 - MLT1A1 LTR MaLR -34 331 1 722 197 56 17 chr9 12207728 12207906 -105654721 - L1MD1 LINE L1 -136 6106 5922 4940 255 56 30 chr9 12207920 12209952 -105652675 + L1M4 LINE L1 14 2096 -4550 1933 336 64 15 chr9 12210180 12210972 -105651655 + L1M4b LINE L1 260 1090 -5769 5867 117 9 3 chr9 12211021 12211947 -105650680 - L1PB1 LINE L1 0 6151 5221 1402 261 59 52 chr9 12211948 12213179 -105649448 + L1M4b LINE L1 1185 2418 -4541 4372 28 0 0 chr9 12213517 12214045 -105648582 - L1P LINE L1 -772 5374 4847 822 58 0 0 chr9 12214045 12214141 -105648486 + L1PA3 LINE L1 6050 6152 -3 699 287 37 12 chr9 12214165 12214754 -105647873 + L1M4b LINE L1 2775 3478 -3479 * 1233 252 40 86 chr9 12214750 12215504 -105647123 + L1M4b LINE L1 3831 4549 -2408 1107 261 40 8 chr9 12215511 12215890 -105646737 + L1M4b LINE L1 5074 5464 -1493 * 2112 226 8 8 chr9 12215878 12216410 -105646217 + L1M4b LINE L1 5683 6214 -743 2146 101 23 4 chr9 12216416 12216925 -105645702 + L1PB1 LINE L1 5470 6151 0 2393 228 33 81 chr9 12216938 12217497 -105645130 + L1MB7 LINE L1 4646 5230 -954 2337 82 0 16 chr9 12217497 12217813 -105644814 + AluY SINE Alu 1 311 0 2393 228 33 81 chr9 12217813 12217926 -105644701 + L1MB7 LINE L1 5230 5347 -837 210 37 0 0 chr9 12217926 12217953 -105644674 + (CA)n Simple_repeat Simple_repeat 2 28 0 2393 228 33 81 chr9 12217953 12218895 -105643732 + L1MB7 LINE L1 5347 6184 0 545 265 107 28 chr9 12218887 12219279 -105643348 + L1M4c LINE L1 1921 2343 -4041 * 24 53 0 0 chr9 12219474 12219512 -105643115 + AT_rich Low_complexity Low_complexity 1 38 0 875 213 88 43 chr9 12219597 12219902 -105642725 - L1MC3 LINE L1 -1377 6802 6484 254 177 32 0 chr9 12219910 12219972 -105642655 - HSMAR2 DNA Mariner 0 1302 1239 4154 263 43 10 chr9 12219973 12222122 -105640505 - L1MC3 LINE L1 -743 5797 4135 1160 294 47 18 chr9 12222171 12222552 -105640075 - L1MC3 LINE L1 -5538 1002 611 225 65 0 0 chr9 12222634 12222665 -105639962 + (TG)n Simple_repeat Simple_repeat 2 32 0 304 163 125 12 chr9 12222685 12222765 -105639862 - L1MC3 LINE L1 -6175 365 277 225 108 0 0 chr9 12223573 12223610 -105639017 + (CA)n Simple_repeat Simple_repeat 2 38 0 265 188 38 25 chr9 12224061 12224141 -105638486 + (TTTA)n Simple_repeat Simple_repeat 2 82 0 207 0 0 0 chr9 12225572 12225595 -105637032 + (A)n Simple_repeat Simple_repeat 1 23 0 2371 72 3 28 chr9 12225738 12226057 -105636570 - AluY SINE Alu 0 311 1 219 69 0 0 chr9 12226326 12226355 -105636272 + (CA)n Simple_repeat Simple_repeat 2 30 0 2361 57 0 0 chr9 12227307 12227639 -105634988 + AluY SINE Alu 1 332 0 433 250 133 8 chr9 12227656 12228021 -105634606 + L1MC4 LINE L1 6188 6560 -1248 279 0 0 0 chr9 12228021 12228052 -105634575 + (CA)n Simple_repeat Simple_repeat 2 32 0 433 250 133 8 chr9 12228052 12228096 -105634531 + L1MC4 LINE L1 6560 6597 -1211 899 223 83 9 chr9 12228108 12228578 -105634049 + MER34 LTR ERV1 13 542 0 288 53 0 0 chr9 12228578 12228616 -105634011 + (TG)n Simple_repeat Simple_repeat 2 39 0 254 284 40 0 chr9 12228625 12228699 -105633928 + L1MC4 LINE L1 6743 6819 -1223 * 3912 209 13 23 chr9 12228684 12229674 -105632953 + L1 LINE L1 4154 5133 -1013 3119 251 48 31 chr9 12229669 12230748 -105631879 + L1MC4a LINE L1 6704 7800 -8 * 441 0 0 0 chr9 12231036 12231085 -105631542 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 307 264 203 56 chr9 12231833 12231926 -105630701 + MIR SINE MIR 37 115 -147 252 0 0 0 chr9 12231926 12231954 -105630673 + (TAA)n Simple_repeat Simple_repeat 1 28 0 307 264 203 56 chr9 12231954 12232057 -105630570 + MIR SINE MIR 115 262 0 2294 100 0 0 chr9 12233481 12233781 -105628846 + AluSx SINE Alu 1 300 -12 180 0 0 0 chr9 12233889 12233909 -105628718 + (TG)n Simple_repeat Simple_repeat 2 21 0 231 217 22 0 chr9 12236937 12236983 -105625644 + CT-rich Low_complexity Low_complexity 5 51 0 8729 112 24 2 chr9 12237044 12238180 -105624447 - HSMAR1 DNA Mariner 0 1287 119 270 56 0 0 chr9 12238180 12238216 -105624411 + (CAA)n Simple_repeat Simple_repeat 2 37 0 8729 112 24 2 chr9 12238216 12238335 -105624292 - HSMAR1 DNA Mariner -1168 119 4 234 0 0 0 chr9 12239291 12239317 -105623310 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 810 196 76 73 chr9 12239484 12239759 -105622868 + MLT2D LTR ERVL 1 276 -138 188 103 51 0 chr9 12240002 12240041 -105622586 + CT-rich Low_complexity Low_complexity 3 43 0 2784 179 47 25 chr9 12241202 12241755 -105620872 - Tigger3b DNA MER2_type -666 565 1 1923 93 99 42 chr9 12241821 12242109 -105620518 + MER4D LTR ERV1 1 312 -591 4513 124 27 33 chr9 12242109 12242892 -105619735 - MER4E LTR ERV1 0 779 2 1923 93 99 42 chr9 12242892 12242935 -105619692 + MER4D LTR ERV1 312 351 -552 336 167 31 21 chr9 12243112 12243208 -105619419 + CT-rich Low_complexity Low_complexity 4 100 0 269 255 110 7 chr9 12244104 12244249 -105618378 - MER97b DNA MER1_type? -194 859 700 223 214 56 22 chr9 12244945 12245034 -105617593 + (CCCTG)n Simple_repeat Simple_repeat 5 96 0 720 163 23 0 chr9 12245475 12245604 -105617023 - FLAM_C SINE Alu -1 132 1 467 222 71 0 chr9 12245678 12245804 -105616823 - MER97a DNA MER1_type? -196 698 564 511 294 117 0 chr9 12245858 12246055 -105616572 - MIR SINE MIR -30 232 13 24 0 0 0 chr9 12246753 12246777 -105615850 + AT_rich Low_complexity Low_complexity 1 24 0 850 161 67 0 chr9 12246921 12247114 -105615513 - L1MA8 LINE L1 -2 6289 6084 1720 151 28 16 chr9 12247560 12247877 -105614750 - L1MA8 LINE L1 -185 6106 5786 792 163 101 17 chr9 12247877 12248055 -105614572 - Tigger1 DNA MER2_type 0 2418 2226 21 0 0 0 chr9 12248063 12248084 -105614543 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 12248386 12248407 -105614220 + AT_rich Low_complexity Low_complexity 1 21 0 1962 110 3 43 chr9 12248891 12249190 -105613437 - AluSq SINE Alu -26 287 1 244 316 26 0 chr9 12249391 12249467 -105613160 + MIR3 SINE MIR 85 162 -46 881 322 75 37 chr9 12249814 12250215 -105612412 - LTR16A LTR ERVL -9 441 26 357 357 14 0 chr9 12250805 12250948 -105611679 - LTR16A LTR ERVL 0 450 306 1411 127 4 48 chr9 12251025 12251253 -105611374 - AluSg/x SINE Alu -20 292 75 27 0 0 0 chr9 12251609 12251636 -105610991 + AT_rich Low_complexity Low_complexity 1 27 0 324 312 48 24 chr9 12251955 12252080 -105610547 - MIR SINE MIR -115 147 20 1310 185 4 0 chr9 12252080 12252318 -105610309 + L1MA7 LINE L1 5681 5919 -372 1571 177 52 33 chr9 12252325 12252692 -105609935 + THE1C LTR MaLR 1 374 -1 8188 154 39 36 chr9 12252700 12254170 -105608457 + THE1C-int LTR MaLR 3 1476 -104 221 56 0 28 chr9 12254170 12254206 -105608421 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 7365 29 1 1 chr9 12254206 12255786 -105606841 - L1PA3 LINE L1 -24 6131 4552 531 106 15 121 chr9 12255779 12255850 -105606777 + THE1C-int LTR MaLR 1463 1515 -65 * 1609 115 0 21 chr9 12255850 12256085 -105606542 - AluSg/x SINE Alu -4 308 79 531 106 15 121 chr9 12256085 12256145 -105606482 + THE1C-int LTR MaLR 1515 1580 0 1717 158 65 14 chr9 12256147 12256502 -105606125 + THE1C LTR MaLR 3 375 0 1575 193 40 0 chr9 12256502 12256854 -105605773 + L1MA7 LINE L1 5924 6289 -2 2163 124 0 0 chr9 12257004 12257302 -105605325 + AluSq SINE Alu 1 298 -15 2169 112 0 3 chr9 12258231 12258535 -105604092 + AluSg SINE Alu 5 307 -3 262 267 130 74 chr9 12259062 12259332 -105603295 - L1ME3 LINE L1 -150 6081 5797 266 237 96 59 chr9 12259648 12259783 -105602844 + MLT1H LTR MaLR 410 549 0 744 278 101 9 chr9 12259808 12260154 -105602473 - L1ME3 LINE L1 -470 5761 5384 14680 57 2 2 chr9 12260158 12262814 -105599813 - L1PA5 LINE L1 -13 6141 3486 2668 68 0 0 chr9 12262815 12263184 -105599443 + L1P LINE L1 3061 3429 -2717 * 21642 66 7 5 chr9 12263179 12266526 -105596101 - L1PA5 LINE L1 -322 5832 2479 1651 186 27 0 chr9 12266901 12267197 -105595430 - AluJb SINE Alu -8 304 1 1083 303 99 19 chr9 12267549 12268611 -105594016 - L1ME3 LINE L1 -1828 4387 3241 * 1797 289 69 47 chr9 12268608 12269997 -105592630 - L1ME3 LINE L1 -3950 2446 1027 1459 310 67 24 chr9 12270043 12270857 -105591770 - L1ME3 LINE L1 -5449 947 91 4759 43 2 0 chr9 12270857 12271439 -105591188 - L1PA5 LINE L1 -1 6153 5571 1459 310 67 24 chr9 12271439 12271499 -105591128 - L1ME3 LINE L1 -6305 91 35 830 348 81 3 chr9 12271850 12272209 -105590418 - L1MEc LINE L1 -5876 520 134 21 89 0 0 chr9 12272209 12272265 -105590362 + AT_rich Low_complexity Low_complexity 1 56 0 245 132 0 94 chr9 12272306 12272359 -105590268 - L1MEc LINE L1 -6294 102 55 369 291 163 26 chr9 12272382 12273182 -105589445 - L1MEc LINE L1 -3174 3041 2171 209 191 22 45 chr9 12273211 12273300 -105589327 + T-rich Low_complexity Low_complexity 6 92 0 197 383 8 17 chr9 12274182 12274302 -105588325 - L2 LINE L2 -925 2389 2271 2081 107 14 0 chr9 12274738 12275027 -105587600 - AluSc SINE Alu -16 293 1 30 0 0 0 chr9 12277194 12277224 -105585403 + AT_rich Low_complexity Low_complexity 1 30 0 266 241 46 0 chr9 12277732 12277819 -105584808 - MER58 DNA MER1_type -224 117 27 216 0 0 0 chr9 12280006 12280030 -105582597 + (TG)n Simple_repeat Simple_repeat 2 25 0 3106 188 29 9 chr9 12280792 12281448 -105581179 - L1MB1 LINE L1 -9 6159 5491 31 88 0 0 chr9 12281954 12282034 -105580593 + AT_rich Low_complexity Low_complexity 1 80 0 793 289 46 18 chr9 12283474 12283754 -105578873 - MLT1G LTR MaLR 0 590 303 185 255 43 0 chr9 12284419 12284466 -105578161 - L2 LINE L2 -5 3267 3219 183 42 0 0 chr9 12284531 12284555 -105578072 + (CA)n Simple_repeat Simple_repeat 1 24 0 349 191 22 38 chr9 12284695 12284878 -105577749 + (TA)n Simple_repeat Simple_repeat 1 180 0 1827 170 3 13 chr9 12284955 12285266 -105577361 + AluSx SINE Alu 3 310 -2 2849 268 55 51 chr9 12285637 12285866 -105576761 + L1M4 LINE L1 33 259 -6283 2101 125 0 13 chr9 12285866 12286178 -105576449 + AluSq SINE Alu 1 308 -5 2849 268 55 51 chr9 12286178 12287092 -105575535 + L1M4 LINE L1 259 1181 -5361 303 192 20 50 chr9 12287093 12287192 -105575435 + (TATATG)n Simple_repeat Simple_repeat 6 101 0 263 165 35 41 chr9 12287206 12287376 -105575251 + (TA)n Simple_repeat Simple_repeat 1 169 0 10962 234 35 16 chr9 12287453 12291369 -105571258 - L1M2 LINE L1 -522 7209 3213 22 66 0 40 chr9 12291374 12291450 -105571177 + AT_rich Low_complexity Low_complexity 1 73 0 28373 40 2 0 chr9 12291456 12295765 -105566862 - L1PA3 LINE L1 -11 6144 1827 1220 257 18 33 chr9 12295761 12296241 -105566386 - L1M2 LINE L1 -4166 3400 2728 * 10300 228 53 49 chr9 12296255 12296822 -105565805 - L1MA6 LINE L1 0 7719 7156 198 0 0 0 chr9 12296822 12296844 -105565783 + (TA)n Simple_repeat Simple_repeat 1 22 0 10300 228 53 49 chr9 12296844 12298993 -105563634 - L1MA6 LINE L1 -563 7156 5019 1539 202 121 5 chr9 12298993 12299374 -105563253 + MSTB LTR MaLR 1 425 -1 10300 228 53 49 chr9 12299374 12301893 -105560734 - L1MA6 LINE L1 -2700 5019 2527 243 253 13 27 chr9 12302243 12302318 -105560309 - MIR SINE MIR -110 152 79 261 320 40 58 chr9 12303778 12303940 -105558687 + MIR SINE MIR 37 188 -67 1935 67 0 0 chr9 12304564 12304802 -105557825 + AluY SINE Alu 1 238 -73 2120 217 50 9 chr9 12304802 12305439 -105557188 - L1 LINE L1 -2606 3540 2140 1297 251 109 7 chr9 12305518 12305921 -105556706 + L1 LINE L1 2420 2863 -3283 251 29 59 0 chr9 12305927 12305961 -105556666 + L1PA3 LINE L1 4206 4241 -1905 6772 113 18 10 chr9 12305964 12307613 -105555014 + L1PA3 LINE L1 4517 6181 0 755 198 78 5 chr9 12307613 12307805 -105554822 + L1MC4 LINE L1 7697 7902 -140 1260 96 0 0 chr9 12307822 12307988 -105554639 + AluSq SINE Alu 40 205 -108 29 47 0 0 chr9 12308009 12308052 -105554575 + AT_rich Low_complexity Low_complexity 1 43 0 277 240 0 0 chr9 12308052 12308102 -105554525 + L2 LINE L2 3256 3305 -8 345 239 19 31 chr9 12308365 12308524 -105554103 + (TA)n Simple_repeat Simple_repeat 2 158 0 21 0 0 0 chr9 12309792 12309813 -105552814 + AT_rich Low_complexity Low_complexity 1 21 0 334 351 154 10 chr9 12309994 12310202 -105552425 - MIR SINE MIR -11 251 14 192 333 56 42 chr9 12310741 12310885 -105551742 + MIR SINE MIR 1 146 -116 241 356 48 14 chr9 12311282 12311428 -105551199 + MIR SINE MIR 20 170 -92 242 217 17 0 chr9 12311468 12311528 -105551099 + (CAT)n Simple_repeat Simple_repeat 2 62 0 22 0 0 0 chr9 12311930 12311952 -105550675 + AT_rich Low_complexity Low_complexity 1 22 0 396 206 28 37 chr9 12313392 12313499 -105549128 - FLAM_A SINE Alu -8 125 20 1491 219 0 0 chr9 12313890 12314169 -105548458 + AluJb SINE Alu 2 280 -32 784 117 7 7 chr9 12314171 12314308 -105548319 + (GGAA)n Simple_repeat Simple_repeat 2 138 0 629 191 30 6 chr9 12314347 12314515 -105548112 + GA-rich Low_complexity Low_complexity 1 172 0 1245 238 83 17 chr9 12317112 12317461 -105545166 + L1MC2 LINE L1 5952 6323 -21 328 286 24 18 chr9 12317471 12317639 -105544988 - Charlie5 DNA MER1_type -1933 679 511 454 248 145 21 chr9 12319045 12319327 -105543300 - Charlie4a DNA MER1_type -7 501 185 390 318 31 8 chr9 12319826 12319955 -105542672 - L2 LINE L2 -2 3270 3139 745 183 12 24 chr9 12320628 12320792 -105541835 + AluSg/x SINE Alu 119 280 -32 22 0 0 0 chr9 12321210 12321232 -105541395 + AT_rich Low_complexity Low_complexity 1 22 0 1569 218 76 51 chr9 12322619 12323069 -105539558 + MLT1C LTR MaLR 7 467 0 24 0 0 0 chr9 12323268 12323292 -105539335 + AT_rich Low_complexity Low_complexity 1 24 0 1246 203 88 30 chr9 12323882 12324212 -105538415 + THE1C LTR MaLR 1 349 -26 24 32 0 0 chr9 12324238 12324269 -105538358 + AT_rich Low_complexity Low_complexity 1 31 0 576 261 67 75 chr9 12324703 12324956 -105537671 - AluJo SINE Alu -23 289 39 1002 313 40 13 chr9 12324973 12325516 -105537111 - L1 LINE L1 -3125 3021 2464 906 182 42 42 chr9 12326029 12326221 -105536406 - AluJb SINE Alu -11 301 110 3629 173 50 8 chr9 12326222 12326571 -105536056 - L1MA8 LINE L1 -324 5967 5634 234 0 0 0 chr9 12326571 12326597 -105536030 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 3629 173 50 8 chr9 12326597 12327313 -105535314 - L1MA8 LINE L1 -657 5634 4857 279 321 27 27 chr9 12327434 12327621 -105535006 - L1 LINE L1 -3324 2822 2636 540 303 27 90 chr9 12327694 12327945 -105534682 + L1M4 LINE L1 13 221 -6321 1618 140 0 0 chr9 12327945 12328223 -105534404 + AluYa5 SINE Alu 28 305 -6 540 303 27 90 chr9 12328223 12328449 -105534178 + L1M4 LINE L1 221 460 -6082 1582 206 57 40 chr9 12328748 12329151 -105533476 + MER77 LTR ERV1 196 605 0 409 242 8 32 chr9 12329886 12330010 -105532617 - L1M4 LINE L1 -6420 122 2 2181 269 79 24 chr9 12330063 12331188 -105531439 + L1M4 LINE L1 3125 4311 -2333 678 80 0 10 chr9 12331961 12332061 -105530566 + AluY SINE Alu 195 293 -18 234 227 21 10 chr9 12332098 12332195 -105530432 + (TA)n Simple_repeat Simple_repeat 2 99 0 1125 255 35 22 chr9 12333762 12334080 -105528547 + Charlie1b DNA MER1_type 1 322 -201 291 243 40 0 chr9 12334161 12334235 -105528392 + Charlie1b DNA MER1_type 442 518 -5 23 54 0 0 chr9 12334812 12334849 -105527778 + AT_rich Low_complexity Low_complexity 1 37 0 27 49 0 0 chr9 12334916 12334957 -105527670 + AT_rich Low_complexity Low_complexity 1 41 0 196 326 43 22 chr9 12336198 12336290 -105526337 + MIR SINE MIR 58 151 -57 1185 188 87 7 chr9 12336607 12336883 -105525744 - L1MC/D LINE L1 -600 5733 5436 671 192 150 21 chr9 12336958 12337080 -105525547 - L1MA4 LINE L1 -15 6285 6180 1826 153 17 3 chr9 12337080 12337381 -105525246 - AluSx SINE Alu -7 305 1 671 192 150 21 chr9 12337381 12337451 -105525176 - L1MA4 LINE L1 -120 6180 6068 1061 256 37 48 chr9 12337456 12338049 -105524578 - L1MC/D LINE L1 -743 5403 4811 368 244 53 0 chr9 12338049 12338180 -105524447 - L1MA7 LINE L1 -2 6289 4791 334 178 22 0 chr9 12338608 12338698 -105523929 + GA-rich Low_complexity Low_complexity 3 94 0 759 157 36 0 chr9 12338737 12338903 -105523724 + GA-rich Low_complexity Low_complexity 1 172 0 326 209 0 81 chr9 12339005 12339091 -105523536 + HsTC2 DNA Tc2 1 79 -1819 191 305 106 57 chr9 12339197 12339338 -105523289 + MIR SINE MIR 9 156 -106 225 0 0 0 chr9 12339863 12339888 -105522739 + (TTA)n Simple_repeat Simple_repeat 3 27 0 2625 38 0 3 chr9 12339888 12340205 -105522422 - L1PA3 LINE L1 -18 6137 5822 4405 24 1 0 chr9 12340205 12340776 -105521851 + L1P1 LINE L1 4860 5431 -724 300 352 28 11 chr9 12340807 12340983 -105521644 + L2 LINE L2 1303 1481 -1833 338 304 89 0 chr9 12341367 12341502 -105521125 - MLT1J1 LTR MaLR -299 147 1 781 335 67 61 chr9 12341502 12342221 -105520406 - L2 LINE L2 -2591 723 1 337 109 91 0 chr9 12342557 12342612 -105520015 + L1PA12 LINE L1 2535 2594 -4987 8499 140 19 9 chr9 12342622 12344843 -105517784 - L1PA10 LINE L1 -11 6157 3962 2255 103 0 7 chr9 12344843 12345145 -105517482 - AluSg SINE Alu -10 300 1 8499 140 19 9 chr9 12345145 12345208 -105517419 - L1PA10 LINE L1 -2206 3962 3901 516 330 161 43 chr9 12345224 12346059 -105516568 + L2 LINE L2 1851 2783 -531 240 307 69 63 chr9 12346305 12346494 -105516133 + L2 LINE L2 3082 3271 -42 522 0 0 0 chr9 12347234 12347292 -105515335 + (TA)n Simple_repeat Simple_repeat 2 59 0 1681 140 52 55 chr9 12347755 12348120 -105514507 + THE1B LTR MaLR 1 364 0 23 68 0 0 chr9 12348477 12348521 -105514106 + AT_rich Low_complexity Low_complexity 1 44 0 24 53 0 0 chr9 12349017 12349055 -105513572 + AT_rich Low_complexity Low_complexity 1 38 0 1788 239 46 5 chr9 12349134 12349573 -105513054 + MER74C LTR ERVL 4 460 0 527 232 43 23 chr9 12349672 12349877 -105512750 - MER61D LTR ERV1 -17 744 340 633 299 35 44 chr9 12350250 12350805 -105511822 - MER51-int LTR ERV1 -1 8254 6776 302 200 0 0 chr9 12350946 12351001 -105511626 - MER51-int LTR ERV1 -274 7542 7488 1356 251 62 6 chr9 12351356 12351679 -105510948 - MER51-int LTR ERV1 -3671 3420 3080 243 103 0 0 chr9 12352636 12352675 -105509952 + (TTCC)n Simple_repeat Simple_repeat 1 39 0 254 250 0 0 chr9 12352676 12352732 -105509895 + CT-rich Low_complexity Low_complexity 2 57 0 426 20 0 0 chr9 12352732 12352783 -105509844 + (CA)n Simple_repeat Simple_repeat 1 51 0 44 84 0 0 chr9 12354335 12354442 -105508185 + AT_rich Low_complexity Low_complexity 1 107 0 21 82 0 0 chr9 12354784 12354833 -105507794 + AT_rich Low_complexity Low_complexity 1 49 0 270 116 0 0 chr9 12355043 12355086 -105507541 + (TATATG)n Simple_repeat Simple_repeat 6 48 0 1704 322 111 20 chr9 12355494 12356431 -105506196 - L2 LINE L2 -353 2961 1940 225 403 42 21 chr9 12356607 12356798 -105505829 - MIR SINE MIR -2 260 66 384 323 31 8 chr9 12357005 12357135 -105505492 + L2 LINE L2 3139 3271 -1 254 306 83 9 chr9 12357574 12357682 -105504945 + L1MDb LINE L1 142 257 -6286 29225 43 2 1 chr9 12357727 12362165 -105500462 + L1PA4 LINE L1 1714 6155 0 1585 216 118 60 chr9 12362162 12362892 -105499735 + L1MDb LINE L1 1180 1951 -4589 * 21 57 0 0 chr9 12362931 12362966 -105499661 + AT_rich Low_complexity Low_complexity 1 35 0 24 53 0 0 chr9 12363036 12363074 -105499553 + AT_rich Low_complexity Low_complexity 1 38 0 24 53 0 0 chr9 12363142 12363180 -105499447 + AT_rich Low_complexity Low_complexity 1 38 0 330 343 50 22 chr9 12363419 12363600 -105499027 + MIR SINE MIR 46 231 -31 833 190 80 6 chr9 12365549 12365712 -105496915 - FAM SINE Alu 0 175 1 21 0 0 0 chr9 12366951 12366972 -105495655 + AT_rich Low_complexity Low_complexity 1 21 0 273 210 8 48 chr9 12367512 12367636 -105494991 + A-rich Low_complexity Low_complexity 4 122 0 957 283 84 10 chr9 12367658 12367969 -105494658 + MLT1H LTR MaLR 12 345 -204 524 316 161 0 chr9 12368393 12368611 -105494016 + MIR SINE MIR 7 259 -3 21 36 0 0 chr9 12368738 12368766 -105493861 + AT_rich Low_complexity Low_complexity 1 28 0 3046 244 58 37 chr9 12368894 12371073 -105491554 - L1MB8 LINE L1 -15 6163 3923 233 260 87 8 chr9 12371101 12371228 -105491399 - L1MB8 LINE L1 -3114 3032 2896 1533 198 38 25 chr9 12371949 12372263 -105490364 - MLT1A1 LTR MaLR 0 365 48 1194 108 0 17 chr9 12372268 12372444 -105490183 + AluSg/x SINE Alu 140 312 0 237 119 0 0 chr9 12373118 12373160 -105489467 + (GA)n Simple_repeat Simple_repeat 2 43 0 204 67 0 0 chr9 12374840 12374870 -105487757 + (T)n Simple_repeat Simple_repeat 1 30 0 567 283 106 1 chr9 12375353 12375556 -105487071 + MIR SINE MIR 38 261 -1 756 203 18 16 chr9 12376241 12376434 -105486193 - L1MC3 LINE L1 -18 7758 6137 228 281 0 0 chr9 12376432 12376496 -105486131 - L1ME LINE L1 -331 5790 5727 * 249 210 0 0 chr9 12377128 12377190 -105485437 + CT-rich Low_complexity Low_complexity 2 63 0 24 67 0 0 chr9 12377405 12377450 -105485177 + AT_rich Low_complexity Low_complexity 1 45 0 540 256 150 11 chr9 12377535 12377715 -105484912 + MER58C DNA MER1_type 1 205 -10 27 49 0 0 chr9 12377995 12378036 -105484591 + AT_rich Low_complexity Low_complexity 1 41 0 22 56 0 0 chr9 12378103 12378139 -105484488 + AT_rich Low_complexity Low_complexity 1 36 0 1125 252 117 10 chr9 12378717 12379190 -105483437 - Charlie1b DNA MER1_type -5 518 1 307 271 82 35 chr9 12379415 12379585 -105483042 - L1ME4a LINE L1 -175 5946 5769 2005 110 7 24 chr9 12379750 12380040 -105482587 + AluSg SINE Alu 14 298 -12 30 0 0 0 chr9 12380080 12380110 -105482517 + AT_rich Low_complexity Low_complexity 1 30 0 198 0 0 0 chr9 12380164 12380186 -105482441 + (TG)n Simple_repeat Simple_repeat 2 23 0 278 281 26 26 chr9 12381711 12381825 -105480802 - L1ME LINE L1 -312 5809 5696 34 55 0 0 chr9 12382867 12382922 -105479705 + AT_rich Low_complexity Low_complexity 1 55 0 192 40 0 0 chr9 12383095 12383120 -105479507 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 1374 189 4 8 chr9 12384800 12385049 -105477578 + AluJo SINE Alu 1 248 -64 522 0 0 0 chr9 12385065 12385123 -105477504 + (TAAAA)n Simple_repeat Simple_repeat 2 59 0 24 53 0 0 chr9 12385281 12385319 -105477308 + AT_rich Low_complexity Low_complexity 1 38 0 360 0 0 0 chr9 12386036 12386076 -105476551 + (TA)n Simple_repeat Simple_repeat 1 40 0 183 264 0 19 chr9 12386080 12386133 -105476494 + MIR SINE MIR 209 260 -2 186 308 25 83 chr9 12386177 12386297 -105476330 - MIR SINE MIR -75 187 75 182 225 75 0 chr9 12387666 12387706 -105474921 - L2 LINE L2 -3 3310 3268 206 99 89 10 chr9 12387792 12387893 -105474734 + (TA)n Simple_repeat Simple_repeat 2 110 0 204 350 49 28 chr9 12389068 12389211 -105473416 - MIR SINE MIR -109 153 8 187 367 11 11 chr9 12389216 12389306 -105473321 - L2 LINE L2 0 3272 3183 233 237 0 0 chr9 12389603 12389662 -105472965 - L1MC4 LINE L1 -1344 6698 6640 * 264 169 34 0 chr9 12389610 12389669 -105472958 + L1MC4 LINE L1 6640 6700 -1342 240 86 0 0 chr9 12389719 12389754 -105472873 + (CA)n Simple_repeat Simple_repeat 2 36 0 366 274 112 45 chr9 12390108 12390287 -105472340 + LTR67 LTR ERVL 367 557 0 261 277 80 62 chr9 12390663 12390775 -105471852 + L2 LINE L2 3199 3312 -1 342 0 0 0 chr9 12390870 12390908 -105471719 + (CA)n Simple_repeat Simple_repeat 2 39 0 3732 166 20 22 chr9 12392177 12392919 -105469708 - L1MA4 LINE L1 -13 6287 5547 22 0 0 0 chr9 12393055 12393077 -105469550 + AT_rich Low_complexity Low_complexity 1 22 0 8404 159 15 2 chr9 12393775 12395187 -105467440 - Tigger1 DNA MER2_type 0 2418 989 388 346 62 44 chr9 12395283 12395604 -105467023 + MLT1H LTR MaLR 17 343 -206 29 0 0 0 chr9 12395889 12395918 -105466709 + AT_rich Low_complexity Low_complexity 1 29 0 302 365 161 19 chr9 12396192 12396403 -105466224 - MIR SINE MIR -12 250 10 194 337 60 12 chr9 12397018 12397101 -105465526 + MIR SINE MIR 26 112 -150 25 31 0 0 chr9 12397631 12397663 -105464964 + AT_rich Low_complexity Low_complexity 1 32 0 441 36 0 0 chr9 12399393 12399448 -105463179 + (CA)n Simple_repeat Simple_repeat 2 56 0 744 134 0 0 chr9 12399462 12399574 -105463053 - AluSg/x SINE Alu -17 295 184 2018 137 0 0 chr9 12400268 12400561 -105462066 + AluSg SINE Alu 1 293 -17 438 53 0 0 chr9 12400578 12400635 -105461992 + (TG)n Simple_repeat Simple_repeat 2 58 0 1363 127 0 19 chr9 12402274 12402479 -105460148 - AluSg/x SINE Alu -20 290 90 9783 190 28 74 chr9 12403036 12403594 -105459033 + L1MA5 LINE L1 2464 3046 -3254 801 242 68 57 chr9 12403594 12403842 -105458785 + AluJo SINE Alu 39 289 -23 9783 190 28 74 chr9 12403842 12406718 -105455909 + L1MA5 LINE L1 3046 5944 -356 2044 109 0 7 chr9 12406718 12407011 -105455616 + AluSx SINE Alu 1 291 -21 9783 190 28 74 chr9 12407011 12407353 -105455274 + L1MA5 LINE L1 5944 6300 0 218 366 128 26 chr9 12407415 12407642 -105454985 + L2 LINE L2 1459 1708 -1606 325 197 23 3 chr9 12407890 12407966 -105454661 + MSTA LTR MaLR 1 78 -354 3771 195 30 62 chr9 12408189 12409383 -105453244 + L1PA13 LINE L1 1540 2728 -4069 3297 149 2 23 chr9 12409395 12409713 -105452914 + L1PA15 LINE L1 5594 5896 -269 2128 123 3 0 chr9 12409713 12410022 -105452605 + AluSg SINE Alu 1 310 0 3297 149 2 23 chr9 12410022 12410265 -105452362 + L1PA15 LINE L1 5896 6143 -22 27 49 0 0 chr9 12411089 12411130 -105451497 + AT_rich Low_complexity Low_complexity 1 41 0 24 0 0 0 chr9 12411956 12411980 -105450647 + AT_rich Low_complexity Low_complexity 1 24 0 1629 203 76 51 chr9 12412179 12412627 -105450000 - MLT1C LTR MaLR 0 467 9 454 254 104 67 chr9 12412864 12413072 -105449555 + LTR37A LTR ERV1 22 270 -156 22 0 0 0 chr9 12413072 12413094 -105449533 + AT_rich Low_complexity Low_complexity 1 22 0 454 254 104 67 chr9 12413094 12413210 -105449417 + LTR37A LTR ERV1 270 380 -46 582 311 28 6 chr9 12413210 12413390 -105449237 + L1MA8 LINE L1 375 558 -6095 * 1441 233 81 3 chr9 12413377 12413699 -105448928 + L1MA8 LINE L1 1134 1480 -5173 10728 208 26 22 chr9 12413704 12415374 -105447253 + L1MA8 LINE L1 3240 4903 -1974 7810 16 0 0 chr9 12415374 12416465 -105446162 + L1PA2 LINE L1 5062 6152 -3 2068 133 13 0 chr9 12416473 12416774 -105445853 + AluSx SINE Alu 1 305 -7 10728 208 26 22 chr9 12416774 12418841 -105443786 + L1MA8 LINE L1 4909 6874 -3 241 172 47 31 chr9 12418844 12418908 -105443719 + L1MA7 LINE L1 5993 6057 -234 715 161 65 11 chr9 12418909 12419095 -105443532 + L1MA7 LINE L1 6095 6290 -1 496 294 19 102 chr9 12419449 12419714 -105442913 - MIR SINE MIR -6 256 14 22 0 0 0 chr9 12421125 12421147 -105441480 + AT_rich Low_complexity Low_complexity 1 22 0 3864 180 42 45 chr9 12421190 12421817 -105440810 - L1MC1 LINE L1 0 6333 5708 1986 154 0 0 chr9 12421817 12422109 -105440518 - AluSx SINE Alu -20 292 1 3864 180 42 45 chr9 12422109 12422382 -105440245 - L1MC1 LINE L1 -625 5708 5436 714 181 150 21 chr9 12422457 12422579 -105440048 - L1MA4 LINE L1 -15 6285 6180 2107 120 17 3 chr9 12422579 12422880 -105439747 - AluSx SINE Alu -7 305 1 714 181 150 21 chr9 12422880 12422950 -105439677 - L1MA4 LINE L1 -120 6180 6068 1448 246 25 21 chr9 12422955 12423537 -105439090 - L1MC1 LINE L1 -743 5403 4857 405 221 53 0 chr9 12423542 12423673 -105438954 - L1MA7 LINE L1 -2 6289 6152 2368 288 11 34 chr9 12423717 12424915 -105437712 + L1PA13 LINE L1 1 1686 -5101 798 265 35 3 chr9 12424915 12425202 -105437425 - L1MC1 LINE L1 -3719 2427 2132 258 376 73 28 chr9 12426191 12426685 -105435942 + L2 LINE L2 1978 2493 -821 300 351 60 66 chr9 12426852 12427365 -105435262 + L2 LINE L2 2804 3313 0 31 76 0 0 chr9 12427573 12427639 -105434988 + AT_rich Low_complexity Low_complexity 1 66 0 33 25 0 0 chr9 12427697 12427737 -105434890 + AT_rich Low_complexity Low_complexity 1 40 0 25 31 0 0 chr9 12427988 12428020 -105434607 + AT_rich Low_complexity Low_complexity 1 32 0 296 346 69 20 chr9 12428363 12428713 -105433914 + L1ME LINE L1 5362 5728 -393 294 95 0 0 chr9 12431648 12431690 -105430937 + (CA)n Simple_repeat Simple_repeat 1 42 0 258 268 84 26 chr9 12431995 12432185 -105430442 - HAL1 LINE L1 -61 2446 2246 50 18 0 0 chr9 12433311 12433368 -105429259 + AT_rich Low_complexity Low_complexity 1 57 0 243 224 20 10 chr9 12434047 12434145 -105428482 + (TA)n Simple_repeat Simple_repeat 1 99 0 678 80 0 10 chr9 12434182 12434282 -105428345 - AluY SINE Alu -18 293 195 1872 135 0 28 chr9 12435023 12435312 -105427315 + AluY SINE Alu 3 283 -28 1918 168 111 0 chr9 12435390 12435770 -105426857 - MSTB LTR MaLR 0 426 5 319 343 93 7 chr9 12435951 12436091 -105426536 - L1ME LINE L1 -337 5833 5682 1386 285 56 39 chr9 12436443 12436726 -105425901 + L1ME1 LINE L1 3566 3843 -2303 1801 149 79 22 chr9 12436726 12437081 -105425546 + THE1C LTR MaLR 1 375 0 1386 285 56 39 chr9 12437081 12437768 -105424859 + L1ME1 LINE L1 3843 4552 -1594 926 191 56 0 chr9 12437775 12437990 -105424637 + L1MA4 LINE L1 6068 6294 -6 2217 245 35 26 chr9 12438068 12438607 -105424020 + MLT2B3 LTR ERVL 1 544 -10 588 294 52 8 chr9 12438628 12438880 -105423747 + L1ME1 LINE L1 4605 4867 -1279 192 346 191 33 chr9 12439307 12439790 -105422837 - L2 LINE L2 -557 2757 2199 2014 218 62 19 chr9 12439806 12440324 -105422303 - MER90 LTR ERV1 0 614 75 265 290 0 0 chr9 12440395 12440457 -105422170 - MER90 LTR ERV1 -525 89 28 23 68 0 0 chr9 12440881 12440925 -105421702 + AT_rich Low_complexity Low_complexity 1 44 0 1937 144 13 3 chr9 12441486 12441785 -105420842 - AluSx SINE Alu -10 302 1 21 82 0 0 chr9 12442969 12443018 -105419609 + AT_rich Low_complexity Low_complexity 1 49 0 38 0 0 0 chr9 12443033 12443071 -105419556 + AT_rich Low_complexity Low_complexity 1 38 0 528 90 13 0 chr9 12443256 12443334 -105419293 + L1MB1 LINE L1 5336 5414 -769 2675 192 20 2 chr9 12443350 12443907 -105418720 + L1MB1 LINE L1 5591 6157 -11 225 0 0 0 chr9 12443907 12443932 -105418695 + (CA)n Simple_repeat Simple_repeat 1 25 0 389 349 123 21 chr9 12443945 12444515 -105418112 + HAL1 LINE L1 24 651 -1856 342 0 0 0 chr9 12444627 12444665 -105417962 + (CA)n Simple_repeat Simple_repeat 2 39 0 21 0 0 0 chr9 12445724 12445745 -105416882 + AT_rich Low_complexity Low_complexity 1 21 0 348 171 43 0 chr9 12446027 12446097 -105416530 + L1ME LINE L1 5550 5622 -542 22 35 0 0 chr9 12446097 12446126 -105416501 + AT_rich Low_complexity Low_complexity 1 29 0 241 264 109 30 chr9 12446374 12446703 -105415924 + L1ME1 LINE L1 4947 5304 -842 908 254 75 20 chr9 12446748 12447224 -105415403 + L1ME1 LINE L1 5494 6103 -63 27064 128 23 72 chr9 12447323 12450127 -105412500 - L1PA8 LINE L1 -13 6159 3218 2097 102 13 25 chr9 12450127 12450441 -105412186 - AluSq SINE Alu -3 310 1 27064 128 23 72 chr9 12450441 12451666 -105410961 - L1PA8 LINE L1 -2954 3218 1934 2138 56 42 24 chr9 12451666 12451953 -105410674 + AluY SINE Alu 1 292 -19 27064 128 23 72 chr9 12451953 12454411 -105408216 - L1PA8 LINE L1 -4238 1934 9 6137 116 49 21 chr9 12454490 12455578 -105407049 - L1MA2 LINE L1 0 6304 5184 189 422 92 0 chr9 12456232 12456341 -105406286 + L2 LINE L2 3151 3269 -3 2139 99 7 10 chr9 12457039 12457343 -105405284 + AluSg SINE Alu 1 303 -7 21 36 0 0 chr9 12457518 12457546 -105405081 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr9 12457738 12457760 -105404867 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr9 12458111 12458146 -105404481 + AT_rich Low_complexity Low_complexity 1 35 0 378 0 0 0 chr9 12460582 12460624 -105402003 + (TG)n Simple_repeat Simple_repeat 2 43 0 2137 111 3 0 chr9 12460624 12460921 -105401706 - AluSg SINE Alu -12 298 1 1578 228 144 78 chr9 12461194 12461800 -105400827 - MLT1E1 LTR MaLR -8 646 1 808 268 47 33 chr9 12462873 12463339 -105399288 - Charlie1b DNA MER1_type -1 522 16 202 200 0 0 chr9 12463830 12463870 -105398757 + (CA)n Simple_repeat Simple_repeat 1 40 0 337 319 65 27 chr9 12464064 12464249 -105398378 + L1MEd LINE L1 904 1095 -5024 183 184 20 82 chr9 12464273 12464322 -105398305 - L2 LINE L2 -2630 684 639 627 280 99 35 chr9 12464931 12465163 -105397464 - MIR SINE MIR -14 248 2 337 321 78 45 chr9 12465220 12465578 -105397049 + L1 LINE L1 3977 4346 -1800 316 159 14 29 chr9 12466347 12466416 -105396211 + L1M1 LINE L1 5543 5610 -695 1237 212 43 96 chr9 12467240 12467431 -105395196 + MER110A LTR ERV1 5 205 -273 333 0 0 0 chr9 12467431 12467468 -105395159 + (CA)n Simple_repeat Simple_repeat 2 38 0 1237 212 43 96 chr9 12467468 12467801 -105394826 + MER110A LTR ERV1 205 470 -8 1847 99 72 0 chr9 12468123 12468385 -105394242 - AluSg SINE Alu -20 290 10 1514 186 27 27 chr9 12468760 12469056 -105393571 + AluJb SINE Alu 6 301 -11 1402 198 35 31 chr9 12469306 12469624 -105393003 - MLT1A1 LTR MaLR -46 319 1 1542 217 160 5 chr9 12469883 12470320 -105392307 + MLT1D LTR MaLR 1 505 0 385 280 21 0 chr9 12470558 12470651 -105391976 - MER81 DNA DNA 0 114 20 1242 228 120 7 chr9 12470747 12471181 -105391446 + Charlie4a DNA MER1_type 25 507 -1 1772 174 52 0 chr9 12472793 12473120 -105389507 - MER2 DNA MER2_type 0 344 1 304 253 63 11 chr9 12474068 12474163 -105388464 - MIR SINE MIR -162 100 1 2221 4 19 0 chr9 12474322 12474584 -105388043 + L1PA3 LINE L1 5889 6155 0 22 0 0 0 chr9 12475150 12475172 -105387455 + AT_rich Low_complexity Low_complexity 1 22 0 32 0 0 0 chr9 12475213 12475245 -105387382 + AT_rich Low_complexity Low_complexity 1 32 0 1616 127 6 106 chr9 12475249 12475580 -105387047 + AluSx SINE Alu 2 299 -3 471 128 139 0 chr9 12475614 12475700 -105386927 + AluSg/x SINE Alu 209 306 -6 4892 160 50 16 chr9 12475716 12476380 -105386247 - L1MA7 LINE L1 -6 6285 5645 234 0 0 0 chr9 12476380 12476406 -105386221 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 4892 160 50 16 chr9 12476406 12477151 -105385476 - L1MA7 LINE L1 -646 5645 4828 22 0 0 0 chr9 12477888 12477910 -105384717 + AT_rich Low_complexity Low_complexity 1 22 0 2267 230 54 17 chr9 12478064 12478655 -105383972 - L1MB7 LINE L1 -44 6140 5528 284 250 0 14 chr9 12480781 12480853 -105381774 - MER77 LTR ERV1 0 605 535 1703 209 45 76 chr9 12481592 12482080 -105380547 - MER77 LTR ERV1 0 605 133 2044 209 44 65 chr9 12482084 12482530 -105380097 + MLT2B1 LTR ERVL 3 438 -82 1868 182 23 8 chr9 12482530 12482926 -105379701 + L1MA5 LINE L1 5897 6298 -2 2044 209 44 65 chr9 12482926 12483006 -105379621 + MLT2B1 LTR ERVL 438 518 -2 410 269 43 50 chr9 12483006 12483144 -105379483 - MER77 LTR ERV1 -468 137 1 1407 279 67 4 chr9 12483656 12484492 -105378135 - L1M4 LINE L1 -3475 3169 2283 4460 246 53 65 chr9 12484599 12486460 -105376167 - L1M4 LINE L1 -4550 2096 264 2565 4 0 0 chr9 12486460 12486738 -105375889 - AluYa5 SINE Alu -6 305 28 4460 246 53 65 chr9 12486738 12486998 -105375629 - L1M4 LINE L1 -6382 264 2 4328 253 94 19 chr9 12487051 12488948 -105373679 + L1MC2 LINE L1 2627 4665 -1481 4146 184 99 6 chr9 12489014 12489900 -105372727 + L1MC2 LINE L1 5355 6323 -21 410 275 24 12 chr9 12489910 12490077 -105372550 - Charlie5 DNA MER1_type -1933 679 511 492 292 162 5 chr9 12491497 12491682 -105370945 - MIR SINE MIR -1 261 48 252 224 15 60 chr9 12491785 12491852 -105370775 - L2 LINE L2 -5 3267 3204 3447 183 58 36 chr9 12491952 12492073 -105370554 - L1MA7 LINE L1 -4 6287 6170 1676 161 7 33 chr9 12492073 12492377 -105370250 - AluJb SINE Alu -8 304 9 3447 183 58 36 chr9 12492377 12493096 -105369531 - L1MA7 LINE L1 -121 6170 5428 328 313 30 0 chr9 12493133 12493267 -105369360 - L1M3b LINE L1 -6139 142 5 816 139 51 126 chr9 12493957 12494203 -105368424 + AluJb SINE Alu 87 316 0 370 95 53 0 chr9 12494484 12494579 -105368048 + (TA)n Simple_repeat Simple_repeat 2 101 0 307 272 126 19 chr9 12494835 12494938 -105367689 - L2 LINE L2 -7 3306 3193 32 0 0 0 chr9 12495084 12495116 -105367511 + AT_rich Low_complexity Low_complexity 1 32 0 497 218 6 0 chr9 12495119 12495289 -105367338 + (TA)n Simple_repeat Simple_repeat 2 172 0 316 260 0 60 chr9 12495293 12495443 -105367184 + L1MC4 LINE L1 6614 6704 -1338 319 193 0 0 chr9 12495448 12495505 -105367122 - AluS SINE Alu -244 57 1 205 146 42 0 chr9 12496695 12496743 -105365884 + (TA)n Simple_repeat Simple_repeat 2 51 0 2327 195 13 7 chr9 12496797 12497253 -105365374 - MER65C LTR ERV1 0 461 3 240 226 38 0 chr9 12497708 12497761 -105364866 + CT-rich Low_complexity Low_complexity 2 56 0 298 235 47 0 chr9 12497773 12497858 -105364769 - L1MC4 LINE L1 -1340 6702 6614 254 302 23 0 chr9 12497859 12497945 -105364682 - L1MC4 LINE L1 -1340 6702 6615 * 255 259 74 0 chr9 12497872 12497953 -105364674 + L1MC4 LINE L1 6614 6700 -1342 1177 182 19 0 chr9 12497957 12498166 -105364461 - AluJo SINE Alu -17 295 83 604 354 42 20 chr9 12498453 12498926 -105363701 - L1ME3A LINE L1 -289 6117 5622 198 0 0 0 chr9 12499645 12499667 -105362960 + (TG)n Simple_repeat Simple_repeat 2 23 0 1380 318 110 58 chr9 12499802 12500323 -105362304 - L1ME3A LINE L1 -4100 2463 1970 324 0 0 0 chr9 12500323 12500359 -105362268 + (TTA)n Simple_repeat Simple_repeat 2 37 0 1914 141 0 7 chr9 12500366 12500650 -105361977 - AluSx SINE Alu -29 283 2 1380 318 110 58 chr9 12500650 12501492 -105361135 - L1ME3A LINE L1 -4598 1965 857 3375 148 74 5 chr9 12502103 12502713 -105359914 + MER39B LTR ERV1 2 653 0 358 261 23 39 chr9 12503949 12504079 -105358548 + MIR SINE MIR 67 194 -68 1422 183 70 12 chr9 12504101 12504590 -105358037 - L1M1 LINE L1 -697 5603 5091 388 207 0 0 chr9 12504590 12504668 -105357959 + L1MA5 LINE L1 6202 6288 -12 559 228 146 67 chr9 12504688 12504942 -105357685 + L1MC4 LINE L1 7446 7719 -323 * 2728 33 0 0 chr9 12504926 12505257 -105357370 - L1P LINE L1 -3120 3026 2696 226 118 0 0 chr9 12505260 12505294 -105357333 - AluJo SINE Alu -230 73 40 540 232 76 35 chr9 12505311 12505509 -105357118 - L1MC4 LINE L1 -140 7902 7697 12201 42 2 2 chr9 12505509 12507041 -105355586 + L1P LINE L1 3525 5056 -1090 21 0 0 0 chr9 12507626 12507647 -105354980 + AT_rich Low_complexity Low_complexity 1 21 0 273 210 8 48 chr9 12508187 12508311 -105354316 + A-rich Low_complexity Low_complexity 4 122 0 939 286 84 10 chr9 12508333 12508644 -105353983 + MLT1H LTR MaLR 12 345 -204 471 250 30 9 chr9 12508638 12508782 -105353845 + MLT1H LTR MaLR 407 525 -24 * 279 221 11 21 chr9 12508790 12508885 -105353742 + (TA)n Simple_repeat Simple_repeat 1 94 0 384 22 0 0 chr9 12508960 12509005 -105353622 + (TA)n Simple_repeat Simple_repeat 1 45 0 1702 227 78 49 chr9 12509642 12510464 -105352163 + L1MDa LINE L1 1763 2618 -3922 257 282 122 35 chr9 12510965 12511192 -105351435 + L1M2 LINE L1 5392 5639 -570 183 256 0 0 chr9 12513374 12513413 -105349214 - MIR SINE MIR -21 241 203 1330 180 38 64 chr9 12513622 12514002 -105348625 + MER67C LTR ERV1 1 403 -271 228 298 0 71 chr9 12514013 12514091 -105348536 + MER67D LTR ERV1 356 427 -87 3940 135 21 6 chr9 12514091 12514726 -105347901 + MER39B LTR ERV1 1 622 0 251 273 15 0 chr9 12514727 12514793 -105347834 + MER67D LTR ERV1 440 506 -8 1963 134 10 26 chr9 12514879 12515186 -105347441 - AluSx SINE Alu -10 302 1 22 0 0 0 chr9 12515192 12515214 -105347413 + AT_rich Low_complexity Low_complexity 1 22 0 210 333 48 0 chr9 12515217 12515280 -105347347 - MIR SINE MIR -173 89 24 3804 138 26 5 chr9 12515289 12515911 -105346716 - MER41B LTR ERV1 0 635 1 41 58 0 0 chr9 12516049 12516118 -105346509 + AT_rich Low_complexity Low_complexity 1 69 0 215 205 0 0 chr9 12516654 12516693 -105345934 + (TG)n Simple_repeat Simple_repeat 2 40 0 327 49 0 0 chr9 12516983 12517024 -105345603 + (CA)n Simple_repeat Simple_repeat 2 42 0 402 21 0 0 chr9 12517062 12517109 -105345518 + (CA)n Simple_repeat Simple_repeat 2 48 0 2058 221 54 50 chr9 12517397 12517660 -105344967 + MER92B LTR ERV1 1 262 -374 1728 193 21 19 chr9 12517660 12518034 -105344593 - THE1C LTR MaLR 0 375 1 2058 221 54 50 chr9 12518034 12518404 -105344223 + MER92B LTR ERV1 262 636 0 290 222 11 78 chr9 12518434 12518524 -105344103 - MIR3 SINE MIR -6 202 119 280 336 19 19 chr9 12520666 12520770 -105341857 + MIR SINE MIR 42 145 -63 255 31 0 0 chr9 12521435 12521467 -105341160 + (TA)n Simple_repeat Simple_repeat 2 33 0 315 0 0 0 chr9 12521472 12521507 -105341120 + (TG)n Simple_repeat Simple_repeat 2 36 0 198 0 0 0 chr9 12521844 12521866 -105340761 + (TA)n Simple_repeat Simple_repeat 1 22 0 219 319 112 26 chr9 12524811 12524927 -105337700 - L2 LINE L2 -4 3309 3184 186 262 19 78 chr9 12525754 12525857 -105336770 - L2 LINE L2 -926 2388 2292 2336 98 10 0 chr9 12525901 12526207 -105336420 - AluY SINE Alu -2 309 1 236 246 138 82 chr9 12526518 12526665 -105335962 + MIR SINE MIR 8 170 -92 1847 143 50 61 chr9 12526665 12527044 -105335583 + THE1C LTR MaLR 1 375 0 236 246 138 82 chr9 12527044 12527091 -105335536 + MIR SINE MIR 170 213 -49 1530 134 9 0 chr9 12527499 12527722 -105334905 + AluSq SINE Alu 5 229 -84 259 309 53 32 chr9 12528902 12528996 -105333631 - MIR3 SINE MIR -103 105 10 34 65 0 0 chr9 12529476 12529538 -105333089 + AT_rich Low_complexity Low_complexity 1 62 0 2310 84 0 3 chr9 12529666 12529963 -105332664 + AluY SINE Alu 1 296 -15 268 371 18 24 chr9 12531063 12531230 -105331397 + Zaphod DNA AcHobo 9 174 -3857 1747 147 4 0 chr9 12531342 12531594 -105331033 - AluSx SINE Alu -53 259 7 25 0 0 0 chr9 12531771 12531796 -105330831 + AT_rich Low_complexity Low_complexity 1 25 0 196 30 61 0 chr9 12532123 12532156 -105330471 + (TTA)n Simple_repeat Simple_repeat 2 36 0 1389 194 18 37 chr9 12532166 12532439 -105330188 - AluJb SINE Alu -44 268 1 195 296 0 0 chr9 12533157 12533201 -105329426 - MIR SINE MIR -139 123 80 329 300 61 70 chr9 12533202 12533432 -105329195 - HAL1 LINE L1 -929 1578 1351 1494 281 50 88 chr9 12533441 12535011 -105327616 + L1PA12 LINE L1 9 2603 -4978 2092 116 0 0 chr9 12535011 12535286 -105327341 + AluSg SINE Alu 1 275 -35 204 67 0 0 chr9 12535290 12535320 -105327307 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 423 0 0 0 chr9 12535897 12535944 -105326683 + (TG)n Simple_repeat Simple_repeat 2 48 0 2245 158 49 7 chr9 12538050 12538460 -105324167 - Tigger2 DNA MER2_type 0 2718 2292 479 113 0 0 chr9 12538464 12538526 -105324101 + MER8 DNA MER2_type 174 235 -4 251 191 16 0 chr9 12539047 12539110 -105323517 + CT-rich Low_complexity Low_complexity 3 66 0 222 111 44 22 chr9 12539188 12539233 -105323394 + T-rich Low_complexity Low_complexity 2 47 0 1510 203 13 19 chr9 12539650 12539961 -105322666 - AluJo SINE Alu -3 309 1 2004 110 21 27 chr9 12540093 12540421 -105322206 - L1PA13 LINE L1 -3 6160 5835 9330 177 30 20 chr9 12540534 12544964 -105317663 - L1PBa LINE L1 -1546 5316 620 441 211 19 0 chr9 12544949 12545053 -105317574 - L1PBa LINE L1 -6668 195 90 * 1803 247 23 11 chr9 12545154 12545632 -105316995 - L1P LINE L1 -1515 4631 4148 3126 212 15 72 chr9 12545632 12545928 -105316699 - L1P LINE L1 -2371 3775 3463 6383 124 9 10 chr9 12545928 12546898 -105315729 - LTR5 LTR ERVK 0 969 1 207 0 0 0 chr9 12546899 12546922 -105315705 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1906 138 4 0 chr9 12546923 12547198 -105315429 - AluSg SINE Alu -32 278 3 3126 212 15 72 chr9 12547198 12547986 -105314641 - L1P LINE L1 -2682 3464 2750 * 4294 72 7 1 chr9 12547984 12548667 -105313960 + L1PA7 LINE L1 5143 5828 -326 1985 92 4 18 chr9 12548668 12548940 -105313687 + AluY SINE Alu 43 310 -1 1371 82 0 0 chr9 12548941 12549111 -105313516 + AluY SINE Alu 123 292 -19 2419 78 3 14 chr9 12549111 12549456 -105313171 + L1PA7 LINE L1 5814 6154 0 21 71 0 0 chr9 12550450 12550492 -105312135 + AT_rich Low_complexity Low_complexity 1 42 0 763 222 21 21 chr9 12550820 12551009 -105311618 - MLT1C LTR MaLR 0 467 279 1390 136 103 7 chr9 12551028 12551300 -105311327 - MER67C LTR ERV1 -307 403 106 2244 133 63 24 chr9 12551301 12551714 -105310913 - Tigger2a DNA MER2_type -5 429 1 496 208 8 17 chr9 12551714 12551828 -105310799 - MER67D LTR ERV1 -401 113 1 231 348 0 42 chr9 12551828 12551946 -105310681 + L2 LINE L2 3163 3275 -38 2047 142 10 0 chr9 12551985 12552287 -105310340 - AluSx SINE Alu -5 307 3 1897 280 76 24 chr9 12554607 12555526 -105307101 - L1ME1 LINE L1 -51 6115 5155 1385 240 47 40 chr9 12555784 12556580 -105306047 - L1MC4 LINE L1 -314 7728 6780 998 275 26 39 chr9 12556646 12557042 -105305585 - MLT1E3 LTR MaLR -1 623 200 268 247 41 0 chr9 12557053 12557126 -105305501 - MLT1C LTR MaLR -391 263 188 28360 118 23 62 chr9 12557864 12563866 -105298761 - L1PA5 LINE L1 -6 6148 419 270 0 0 0 chr9 12563866 12563896 -105298731 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 28360 118 23 62 chr9 12563896 12564292 -105298335 - L1PA5 LINE L1 -5735 419 9 2165 134 30 19 chr9 12565457 12565822 -105296805 - THE1C LTR MaLR -4 371 3 24 67 0 0 chr9 12565927 12565972 -105296655 + AT_rich Low_complexity Low_complexity 1 45 0 300 359 39 0 chr9 12566616 12566719 -105295908 + MER91C DNA MER1_type 2 108 -32 234 347 29 35 chr9 12566848 12567018 -105295609 + L1MCc LINE L1 114 282 -6141 3846 204 10 7 chr9 12567168 12567939 -105294688 - MSTA-int LTR MaLR -877 774 1 2053 190 59 5 chr9 12567939 12568345 -105294282 - MSTA LTR MaLR 0 428 1 3199 215 36 12 chr9 12568345 12569177 -105293450 - L1 LINE L1 -1171 4975 4124 * 3991 178 61 6 chr9 12569176 12569992 -105292635 + L1MB3 LINE L1 5319 6179 -4 491 281 31 6 chr9 12570250 12570410 -105292217 + L1MC5 LINE L1 7762 7925 -36 1773 217 13 0 chr9 12570419 12570793 -105291834 + L1MC1 LINE L1 5950 6328 -5 2222 168 21 46 chr9 12570928 12571363 -105291264 + MLT1C LTR MaLR 1 424 -43 662 168 0 48 chr9 12571361 12571486 -105291141 + MLT1C LTR MaLR 349 467 0 * 2225 126 0 0 chr9 12572104 12572413 -105290214 + AluSq SINE Alu 3 311 -2 647 289 79 33 chr9 12572563 12572728 -105289899 + L1ME2 LINE L1 4624 4780 -1366 1440 104 50 9 chr9 12572728 12572949 -105289678 - MER30 DNA MER1_type 0 230 1 647 289 79 33 chr9 12572949 12573292 -105289335 + L1ME2 LINE L1 4780 5155 -991 3138 115 17 19 chr9 12573351 12573890 -105288737 - L1MA3 LINE L1 0 6305 5768 231 242 62 37 chr9 12573975 12574051 -105288576 + L1ME2 LINE L1 5265 5338 -826 1441 208 48 28 chr9 12574051 12574407 -105288220 + MLT1A1 LTR MaLR 3 365 0 231 242 62 37 chr9 12574407 12574491 -105288136 + L1ME2 LINE L1 5338 5429 -735 696 286 65 26 chr9 12574492 12574903 -105287724 + L1ME2 LINE L1 5719 6148 -16 1753 210 39 50 chr9 12574938 12575376 -105287251 + MER82 DNA MER2_type 2 434 -219 5167 185 16 10 chr9 12575376 12575972 -105286655 - L1P LINE L1 -1218 4928 4322 2336 97 3 0 chr9 12575972 12576281 -105286346 - AluSp SINE Alu -3 310 1 5167 185 16 10 chr9 12576281 12576718 -105285909 - L1P LINE L1 -1824 4322 3889 * 5584 113 28 78 chr9 12576716 12578045 -105284582 + L1PA14 LINE L1 4927 6161 0 195 129 0 0 chr9 12578430 12578461 -105284166 + (A)n Simple_repeat Simple_repeat 1 31 0 745 271 64 9 chr9 12578464 12578682 -105283945 + MER82 DNA MER2_type 424 653 0 3744 121 48 139 chr9 12579285 12580827 -105281800 - pTR5 LTR ERV1 0 2438 741 26 0 0 0 chr9 12580969 12580995 -105281632 + AT_rich Low_complexity Low_complexity 1 26 0 216 163 0 0 chr9 12581107 12581150 -105281477 + (TA)n Simple_repeat Simple_repeat 2 44 0 216 216 0 0 chr9 12581141 12581192 -105281435 + (CA)n Simple_repeat Simple_repeat 2 52 0 1754 155 36 65 chr9 12581192 12581572 -105281055 + Tigger2a DNA MER2_type 1 371 -2337 225 0 0 0 chr9 12581572 12581597 -105281030 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 23 0 0 0 chr9 12581724 12581747 -105280880 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr9 12581784 12581807 -105280820 + AT_rich Low_complexity Low_complexity 1 23 0 193 54 0 54 chr9 12582279 12582316 -105280311 + (CAAAA)n Simple_repeat Simple_repeat 4 38 0 24 53 0 0 chr9 12582857 12582895 -105279732 + AT_rich Low_complexity Low_complexity 1 38 0 251 366 59 0 chr9 12583603 12583704 -105278923 + MER91C DNA MER1_type 2 108 -32 1885 166 84 56 chr9 12584195 12584635 -105277992 + L1PA15 LINE L1 5456 5842 -314 234 91 0 0 chr9 12584635 12584668 -105277959 + (TA)n Simple_repeat Simple_repeat 2 34 0 1885 166 84 56 chr9 12584668 12584990 -105277637 + L1PA15 LINE L1 5842 6153 -3 261 117 67 33 chr9 12584993 12585053 -105277574 + Tigger3(Golem) DNA MER2_type 198 259 -2770 23 54 0 0 chr9 12585150 12585187 -105277440 + AT_rich Low_complexity Low_complexity 1 37 0 930 306 93 58 chr9 12586553 12587144 -105275483 + L1M2c LINE L1 7 618 -6171 * 1629 160 16 13 chr9 12587141 12587459 -105275168 - L1 LINE L1 -1751 4395 4077 1930 211 29 88 chr9 12587512 12588101 -105274526 - MLT2B3 LTR ERVL 0 554 1 2233 112 0 0 chr9 12588279 12588582 -105274045 + AluY SINE Alu 7 309 -2 28 29 0 0 chr9 12588885 12588920 -105273707 + AT_rich Low_complexity Low_complexity 1 35 0 201 213 0 0 chr9 12589024 12589071 -105273556 + (TA)n Simple_repeat Simple_repeat 2 48 0 249 83 0 0 chr9 12589082 12589118 -105273509 + (CA)n Simple_repeat Simple_repeat 2 37 0 975 227 10 15 chr9 12589119 12589322 -105273305 - MER8 DNA MER2_type -2 237 36 21 57 0 0 chr9 12589326 12589361 -105273266 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr9 12589456 12589481 -105273146 + AT_rich Low_complexity Low_complexity 1 25 0 1953 125 4 0 chr9 12589483 12589762 -105272865 + AluSx SINE Alu 3 282 -30 317 252 0 0 chr9 12589769 12589876 -105272751 + (TAGA)n Simple_repeat Simple_repeat 4 110 0 704 61 10 0 chr9 12590043 12590141 -105272486 + (TCTA)n Simple_repeat Simple_repeat 4 102 0 265 235 37 0 chr9 12590277 12590358 -105272269 + (TCTA)n Simple_repeat Simple_repeat 1 84 0 240 311 68 25 chr9 12590497 12590658 -105271969 - L1 LINE L1 -1983 4163 3996 701 335 23 23 chr9 12590675 12591102 -105271525 - L1ME3A LINE L1 -17 6153 5727 1609 220 35 27 chr9 12591138 12591511 -105271116 + L1MDa LINE L1 18 393 -6147 1450 118 45 0 chr9 12591597 12591817 -105270810 + MER30 DNA MER1_type 1 230 0 7730 39 2 5 chr9 12592548 12594278 -105268349 - L1PA4 LINE L1 -3 6152 4425 23573 40 9 2 chr9 12594278 12597246 -105265381 + L1PA4 LINE L1 1408 4398 -1748 549 286 132 19 chr9 12598106 12598372 -105264255 + MLT1I LTR MaLR 111 406 -3 21 57 0 0 chr9 12598764 12598799 -105263828 + AT_rich Low_complexity Low_complexity 1 35 0 1844 203 84 66 chr9 12598908 12599406 -105263221 + MER67D LTR ERV1 1 507 -7 791 349 29 14 chr9 12599815 12600165 -105262462 + Charlie6 DNA MER1_type 21 375 -3125 1197 150 340 3 chr9 12600306 12600600 -105262027 - MSTA LTR MaLR -34 394 2 968 97 7 14 chr9 12600601 12600745 -105261882 - THE1C-int LTR MaLR 0 1580 1438 6336 150 60 6 chr9 12600756 12601829 -105260798 - THE1C-int LTR MaLR -449 1131 1 1678 155 78 19 chr9 12601841 12602163 -105260464 - THE1C LTR MaLR -34 341 1 225 247 123 0 chr9 12602166 12602247 -105260380 + Charlie6 DNA MER1_type 636 726 -2774 402 279 81 25 chr9 12603174 12603335 -105259292 - MLT1J2 LTR MaLR -8 442 273 213 196 0 0 chr9 12605842 12605893 -105256734 + (TA)n Simple_repeat Simple_repeat 1 51 0 21 57 0 0 chr9 12605964 12605999 -105256628 + AT_rich Low_complexity Low_complexity 1 35 0 34 79 0 0 chr9 12606157 12606233 -105256394 + AT_rich Low_complexity Low_complexity 1 76 0 36 53 0 0 chr9 12606721 12606778 -105255849 + AT_rich Low_complexity Low_complexity 1 57 0 287 221 12 0 chr9 12607020 12607106 -105255521 + (TA)n Simple_repeat Simple_repeat 2 88 0 250 295 57 57 chr9 12607187 12607292 -105255335 - MIR SINE MIR -147 115 11 30 27 0 0 chr9 12608165 12608202 -105254425 + AT_rich Low_complexity Low_complexity 1 37 0 22 70 0 0 chr9 12608671 12608714 -105253913 + AT_rich Low_complexity Low_complexity 1 43 0 979 225 4 26 chr9 12608730 12608957 -105253670 - L1MD2 LINE L1 -17 6342 6121 5239 201 28 7 chr9 12609404 12610653 -105251974 - L1MC1 LINE L1 -6 6396 5122 321 246 0 0 chr9 12610655 12610720 -105251907 - L1MC1 LINE L1 -4041 2355 2291 1994 162 123 5 chr9 12610960 12611343 -105251284 - MSTA LTR MaLR 0 428 1 10579 266 88 28 chr9 12662579 12664606 -105198021 + L1PB4 LINE L1 1337 3242 -2914 234 0 0 0 chr9 12664606 12664632 -105197995 + (GA)n Simple_repeat Simple_repeat 2 27 0 10579 266 88 28 chr9 12664632 12667122 -105195505 + L1PB4 LINE L1 3242 6061 -95 586 305 126 41 chr9 12667554 12667958 -105194669 - L1MC5 LINE L1 -45 7916 7434 22 0 0 0 chr9 12667958 12667980 -105194647 + AT_rich Low_complexity Low_complexity 1 22 0 586 305 126 41 chr9 12667980 12668092 -105194535 - L1MC5 LINE L1 -527 7434 7333 214 214 29 58 chr9 12668404 12668507 -105194120 + (TATAA)n Simple_repeat Simple_repeat 1 100 0 22 80 0 0 chr9 12669021 12669071 -105193556 + AT_rich Low_complexity Low_complexity 1 50 0 9551 207 34 13 chr9 12669476 12669704 -105192923 + L1P5 LINE L1 2694 2916 -3235 2782 7 0 0 chr9 12669704 12670008 -105192619 + AluYa5 SINE Alu 1 304 -7 9551 207 34 13 chr9 12670008 12672780 -105189847 + L1P5 LINE L1 2916 5754 -397 2890 193 63 15 chr9 12672880 12673564 -105189063 - L1PA12 LINE L1 -4811 2773 2057 225 270 0 16 chr9 12673601 12673664 -105188963 - L1PA12 LINE L1 -5660 1925 1864 324 356 37 30 chr9 12673956 12674226 -105188401 - L1M2 LINE L1 -5782 1067 796 1137 323 65 36 chr9 12674338 12675149 -105187478 - L1PA12 LINE L1 -5660 1921 10 1136 234 69 76 chr9 12676599 12676992 -105185635 + MLT1B LTR MaLR 1 390 0 1013 287 45 27 chr9 12677016 12677417 -105185210 - L1MCc LINE L1 -5994 429 22 953 291 175 41 chr9 12677827 12678335 -105184292 - MLT1H1 LTR MaLR 0 555 15 237 65 0 0 chr9 12678338 12678369 -105184258 + (CA)n Simple_repeat Simple_repeat 2 32 0 232 301 48 0 chr9 12678706 12678789 -105183838 - HAL1 LINE L1 -16 2491 2405 1184 216 17 6 chr9 12678829 12679160 -105183467 + MER74C LTR ERVL 3 419 -139 302 266 115 91 chr9 12680582 12680966 -105181661 + MLT1J LTR MaLR 45 437 -74 437 316 175 0 chr9 12681202 12681408 -105181219 - MIR SINE MIR 0 262 21 1025 216 9 0 chr9 12682198 12682416 -105180211 - THE1-int LTR MaLR -33 1547 1328 620 149 35 8 chr9 12682522 12682742 -105179885 + L1PA8A LINE L1 112 519 -5356 323 130 52 0 chr9 12682740 12682817 -105179810 - L1P LINE L1 -2962 3184 3104 * 10054 191 17 23 chr9 12682821 12683511 -105179116 + L1PA8A LINE L1 523 1216 -5245 350 85 17 0 chr9 12683511 12683570 -105179057 + (CAA)n Simple_repeat Simple_repeat 1 60 0 10054 191 17 23 chr9 12683570 12685656 -105176971 + L1PA8A LINE L1 1216 3344 -3117 14183 131 13 0 chr9 12685764 12688832 -105173795 + L1PA8A LINE L1 3343 6441 -5 1800 210 82 12 chr9 12688897 12689325 -105173302 + LOR1b LTR ERV1 1 458 -3 1513 163 12 0 chr9 12690022 12690273 -105172354 + MSTA LTR MaLR 1 254 -174 310 146 21 0 chr9 12690748 12690796 -105171831 - LOR1a LTR ERV1 0 497 449 29 84 0 0 chr9 12690947 12691018 -105171609 + AT_rich Low_complexity Low_complexity 1 71 0 189 74 0 0 chr9 12691704 12691731 -105170896 + (CATATA)n Simple_repeat Simple_repeat 2 28 0 239 352 43 31 chr9 12692348 12692510 -105170117 + MIR SINE MIR 32 195 -67 302 268 92 52 chr9 12692593 12692696 -105169931 + MIR SINE MIR 41 153 -109 1689 187 57 157 chr9 12692696 12693504 -105169123 + LTR8A LTR ERV1 1 727 0 302 268 92 52 chr9 12693504 12693553 -105169074 + MIR SINE MIR 153 199 -63 25 0 0 0 chr9 12694862 12694887 -105167740 + AT_rich Low_complexity Low_complexity 1 25 0 2270 96 3 0 chr9 12695926 12696228 -105166399 + AluSx SINE Alu 2 304 -8 21 36 0 0 chr9 12696317 12696345 -105166282 + AT_rich Low_complexity Low_complexity 1 28 0 719 135 0 0 chr9 12696379 12696483 -105166144 - MLT1A1 LTR MaLR 0 365 262 566 167 32 56 chr9 12696485 12696611 -105166016 - MLT1A1 LTR MaLR -242 123 1 8652 223 63 60 chr9 12696663 12701167 -105161460 - L1MA9 LINE L1 -11 6537 2015 3106 148 17 0 chr9 12701247 12701725 -105160902 + LTR10B LTR ERV1 20 505 0 650 176 170 13 chr9 12701725 12701878 -105160749 - MER4A-int LTR ERV1 -6421 177 1 3397 133 6 50 chr9 12701885 12702508 -105160119 - MER4A LTR ERV1 -4 596 1 488 331 36 49 chr9 12702573 12702984 -105159643 + L1MC4a LINE L1 5487 5892 -1916 24 103 0 0 chr9 12703821 12703908 -105158719 + AT_rich Low_complexity Low_complexity 1 87 0 23 33 0 0 chr9 12704284 12704314 -105158313 + AT_rich Low_complexity Low_complexity 1 30 0 2165 57 4 0 chr9 12704869 12705134 -105157493 - AluY SINE Alu -11 300 35 903 271 48 38 chr9 12706388 12706761 -105155866 - LTR52 LTR ERVL -34 387 11 187 377 0 26 chr9 12706955 12707032 -105155595 + L2 LINE L2 3021 3095 -177 428 336 114 19 chr9 12707233 12707557 -105155070 + LTR33 LTR ERVL 111 465 -56 1622 205 130 20 chr9 12707909 12708362 -105154265 - MLT1D LTR MaLR -2 503 1 1549 189 36 6 chr9 12708933 12709267 -105153360 + L1MA5 LINE L1 5955 6298 -2 204 245 0 19 chr9 12709959 12710012 -105152615 + MIR SINE MIR 175 226 -36 21 0 0 0 chr9 12710062 12710083 -105152544 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr9 12710677 12710711 -105151916 + AT_rich Low_complexity Low_complexity 1 34 0 1916 125 4 7 chr9 12711027 12711308 -105151319 + AluSx SINE Alu 1 280 -32 288 0 0 0 chr9 12711312 12711344 -105151283 + (GA)n Simple_repeat Simple_repeat 2 33 0 2336 138 102 4 chr9 12711588 12712033 -105150594 - L1MA5 LINE L1 -35 6265 5775 248 184 0 0 chr9 12712017 12712066 -105150561 + L1MA5 LINE L1 6248 6296 -4 * 30 45 0 0 chr9 12712066 12712110 -105150517 + AT_rich Low_complexity Low_complexity 1 44 0 225 211 42 11 chr9 12712356 12712451 -105150176 + (TA)n Simple_repeat Simple_repeat 1 98 0 219 188 0 0 chr9 12712471 12712519 -105150108 + (TA)n Simple_repeat Simple_repeat 2 49 0 23 54 0 0 chr9 12713093 12713130 -105149497 + AT_rich Low_complexity Low_complexity 1 37 0 24 77 0 0 chr9 12714518 12714570 -105148057 + AT_rich Low_complexity Low_complexity 1 52 0 22 35 0 0 chr9 12715406 12715435 -105147192 + AT_rich Low_complexity Low_complexity 1 29 0 2230 68 26 13 chr9 12716098 12716224 -105146403 + AluY SINE Alu 1 124 -187 243 0 0 0 chr9 12716224 12716251 -105146376 + (CA)n Simple_repeat Simple_repeat 2 28 0 2230 68 26 13 chr9 12716251 12716431 -105146196 + AluY SINE Alu 124 311 0 26 0 0 0 chr9 12716598 12716624 -105146003 + AT_rich Low_complexity Low_complexity 1 26 0 25 75 0 0 chr9 12717023 12717076 -105145551 + AT_rich Low_complexity Low_complexity 1 53 0 22 35 0 0 chr9 12717198 12717227 -105145400 + AT_rich Low_complexity Low_complexity 1 29 0 962 168 10 41 chr9 12717633 12717829 -105144798 - L1MB1 LINE L1 -24 6144 5955 2790 202 32 58 chr9 12717832 12719325 -105143302 - L1MB1 LINE L1 -286 5882 4442 2608 239 36 61 chr9 12719321 12719390 -105143237 - L1MB1 LINE L1 -2751 3395 3326 * 2043 140 16 0 chr9 12719390 12719697 -105142930 - AluSx SINE Alu 0 312 1 2608 239 36 61 chr9 12719697 12720245 -105142382 - L1MB1 LINE L1 -2820 3326 2818 825 233 0 6 chr9 12720245 12720408 -105142219 - FAM SINE Alu -12 163 2 2608 239 36 61 chr9 12720408 12720959 -105141668 - L1MB1 LINE L1 -3328 2818 2255 1202 237 48 74 chr9 12720962 12721145 -105141482 + L1M4c LINE L1 1415 1601 -4783 213 39 0 0 chr9 12721145 12721171 -105141456 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1202 237 48 74 chr9 12721171 12721447 -105141180 + L1M4c LINE L1 1601 1862 -4522 235 253 44 33 chr9 12721614 12721705 -105140922 - L1MCb LINE L1 -4682 2063 1972 4176 233 58 46 chr9 12721706 12722620 -105140007 - L1MC3 LINE L1 -16 7769 6833 204 40 0 0 chr9 12722620 12722645 -105139982 + (TGG)n Simple_repeat Simple_repeat 1 25 0 4176 233 58 46 chr9 12722645 12723020 -105139607 - L1MC3 LINE L1 -952 6833 6464 358 207 24 24 chr9 12723028 12723110 -105139517 - L1MC3 LINE L1 -1402 6383 6302 1141 199 21 102 chr9 12723210 12723657 -105138970 - LTR34 LTR ERV1 -304 395 1 2635 199 55 25 chr9 12723695 12724459 -105138168 - LTR1B LTR ERV1 -1 784 1 2527 280 69 25 chr9 12724459 12724956 -105137671 - L1MCb LINE L1 -4851 1194 721 189 0 0 0 chr9 12724956 12724977 -105137650 + (TTG)n Simple_repeat Simple_repeat 1 21 0 2527 280 69 25 chr9 12724977 12725905 -105136722 - L1MCb LINE L1 -5324 721 3 994 323 61 23 chr9 12725938 12726412 -105136215 - L1MCc LINE L1 -5102 1321 830 1174 283 46 12 chr9 12726716 12727147 -105135480 - L1MCc LINE L1 -5948 475 30 252 409 42 42 chr9 12727462 12727675 -105134952 - L2 LINE L2 -19 3253 3041 27 29 0 0 chr9 12728753 12728787 -105133840 + AT_rich Low_complexity Low_complexity 1 34 0 4202 281 88 35 chr9 12728857 12732426 -105130201 - L1MD2 LINE L1 0 6428 2435 987 139 0 0 chr9 12732426 12732606 -105130021 + (TA)n Simple_repeat Simple_repeat 1 180 0 4202 281 88 35 chr9 12732606 12735074 -105127553 - L1MD2 LINE L1 -3993 2435 100 185 224 17 0 chr9 12735430 12735488 -105127139 + (TATATG)n Simple_repeat Simple_repeat 6 64 0 739 264 17 64 chr9 12735587 12735822 -105126805 - MER58A DNA MER1_type 0 224 1 24 0 0 0 chr9 12736717 12736741 -105125886 + AT_rich Low_complexity Low_complexity 1 24 0 270 381 116 28 chr9 12737096 12737458 -105125169 - L2 LINE L2 -411 2903 2510 203 406 0 0 chr9 12737590 12737659 -105124968 - MIR SINE MIR -188 74 6 25 95 0 0 chr9 12738645 12738719 -105123908 + AT_rich Low_complexity Low_complexity 1 74 0 240 35 0 0 chr9 12740327 12740356 -105122271 + (CA)n Simple_repeat Simple_repeat 1 29 0 205 200 0 22 chr9 12740593 12740638 -105121989 + CT-rich Low_complexity Low_complexity 3 46 0 1829 218 47 24 chr9 12740997 12741464 -105121163 + MLT1D LTR MaLR 28 505 0 239 304 94 22 chr9 12741971 12742195 -105120432 - HAL1 LINE L1 -295 2212 1973 416 325 25 15 chr9 12742296 12742496 -105120131 - HAL1 LINE L1 -749 1758 1557 21 36 0 0 chr9 12742526 12742554 -105120073 + AT_rich Low_complexity Low_complexity 1 28 0 254 306 75 48 chr9 12743335 12743482 -105119145 + L2 LINE L2 3122 3272 0 2557 163 2 0 chr9 12744127 12744550 -105118077 - THE1C-int LTR MaLR -1153 427 4 1400 193 76 25 chr9 12744553 12744910 -105117717 - THE1C LTR MaLR 0 375 1 1091 179 0 0 chr9 12745341 12745537 -105117090 + L1PBa LINE L1 3 198 -6665 * 9653 136 54 18 chr9 12745525 12747305 -105115322 + L1PBa LINE L1 617 2672 -4190 2296 82 7 0 chr9 12747305 12747598 -105115029 + AluY SINE Alu 1 295 -16 9653 136 54 18 chr9 12747598 12748346 -105114281 + L1PBa LINE L1 2672 3391 -3471 1402 245 50 6 chr9 12748652 12748991 -105113636 - MER21B LTR ERV1 -146 717 364 194 296 130 28 chr9 12748995 12749103 -105113524 - L2 LINE L2 -12 3260 3142 21 36 0 0 chr9 12751824 12751852 -105110775 + AT_rich Low_complexity Low_complexity 1 28 0 192 77 0 0 chr9 12752918 12752944 -105109683 + (GA)n Simple_repeat Simple_repeat 1 26 0 348 250 45 75 chr9 12753445 12753477 -105109150 - L1M4c LINE L1 -5077 1307 1276 306 73 0 0 chr9 12753477 12753518 -105109109 + (CA)n Simple_repeat Simple_repeat 1 41 0 348 250 45 75 chr9 12753518 12753685 -105108942 - L1M4c LINE L1 -5108 1276 1114 376 184 3 8 chr9 12753748 12753845 -105108782 - AluJ/FRAM SINE Alu -15 287 131 207 0 0 0 chr9 12754438 12754461 -105108166 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 184 327 40 10 chr9 12754935 12755036 -105107591 + MIR SINE MIR 48 151 -111 22 35 0 0 chr9 12755190 12755219 -105107408 + AT_rich Low_complexity Low_complexity 1 29 0 369 62 0 0 chr9 12755227 12755275 -105107352 + (TA)n Simple_repeat Simple_repeat 2 49 0 1646 166 0 4 chr9 12755347 12755606 -105107021 - AluSq SINE Alu -49 264 7 23 33 0 0 chr9 12755702 12755732 -105106895 + AT_rich Low_complexity Low_complexity 1 30 0 1908 172 34 0 chr9 12755855 12756181 -105106446 + MER1B DNA MER1_type 1 337 0 3583 161 25 3 chr9 12756610 12757281 -105105346 - L1MA4 LINE L1 -4 6296 5611 2060 161 18 19 chr9 12757281 12757711 -105104916 + L1M1 LINE L1 5221 5650 -650 193 335 97 65 chr9 12757839 12758024 -105104603 - MIR SINE MIR -68 194 4 584 313 152 36 chr9 12759904 12760371 -105102256 - L2 LINE L2 -528 2786 2266 273 29 0 0 chr9 12760373 12760407 -105102220 + (TG)n Simple_repeat Simple_repeat 2 35 0 26 0 0 0 chr9 12760782 12760808 -105101819 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr9 12760999 12761027 -105101600 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr9 12761210 12761232 -105101395 + AT_rich Low_complexity Low_complexity 1 22 0 1753 167 3 13 chr9 12761482 12761814 -105100813 - AluSx SINE Alu 0 312 2 2221 183 49 6 chr9 12762597 12763090 -105099537 - L1MA9 LINE L1 -2 6310 5797 219 69 0 0 chr9 12763095 12763124 -105099503 + (TG)n Simple_repeat Simple_repeat 2 30 0 242 153 17 0 chr9 12763217 12763276 -105099351 + (TA)n Simple_repeat Simple_repeat 1 60 0 323 23 23 0 chr9 12763314 12763358 -105099269 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 980 180 0 0 chr9 12763386 12763553 -105099074 - L1MA9 LINE L1 -542 5749 5583 2658 209 42 12 chr9 12763555 12764226 -105098401 - L1MA9 LINE L1 -909 5237 4547 4473 165 22 26 chr9 12764226 12765225 -105097402 - L1PB4 LINE L1 -3 6153 5158 203 222 42 14 chr9 12766311 12766383 -105096244 + A-rich Low_complexity Low_complexity 5 78 0 257 0 30 0 chr9 12766715 12766748 -105095879 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2014 125 0 0 chr9 12766751 12767031 -105095596 - AluSg SINE Alu -30 280 1 5298 71 43 3 chr9 12767953 12768688 -105093939 - MER4E LTR ERV1 -1 765 1 24 32 0 0 chr9 12768726 12768757 -105093870 + AT_rich Low_complexity Low_complexity 1 31 0 578 190 35 81 chr9 12770218 12770392 -105092235 - LTR40b LTR ERVL -6 456 291 1431 302 42 30 chr9 12770394 12770921 -105091706 - REP3 LTR ERV -27 535 3 346 308 75 50 chr9 12770921 12771058 -105091569 - LTR40a LTR ERVL -172 347 207 1401 188 65 7 chr9 12771059 12771335 -105091292 + MSTB LTR MaLR 3 294 -132 1931 147 7 0 chr9 12771837 12772137 -105090490 + AluSx SINE Alu 11 312 0 731 256 31 0 chr9 12772588 12772811 -105089816 - L1M4 LINE L1 -2369 3777 3548 24 0 0 0 chr9 12772953 12772977 -105089650 + AT_rich Low_complexity Low_complexity 1 24 0 2289 91 3 0 chr9 12773471 12773768 -105088859 + AluSp SINE Alu 1 298 -15 810 237 0 29 chr9 12774457 12774630 -105087997 + AluJo SINE Alu 122 289 -23 427 206 153 24 chr9 12774646 12774816 -105087811 + LTR37A LTR ERV1 166 357 -69 704 270 49 85 chr9 12774835 12775386 -105087241 - L1M4 LINE L1 -2600 3546 3016 2054 139 6 30 chr9 12775386 12775718 -105086909 + THE1B LTR MaLR 1 324 -40 296 170 0 0 chr9 12775709 12775762 -105086865 - AluSg/x SINE Alu -116 184 132 * 805 158 0 0 chr9 12775762 12775895 -105086732 - AluJo/FLAM SINE Alu -169 133 1 990 191 0 62 chr9 12775895 12776120 -105086507 + THE1B LTR MaLR 154 364 0 396 291 7 20 chr9 12776123 12776271 -105086356 - L1M4 LINE L1 -3129 3017 2872 275 330 92 0 chr9 12776271 12776380 -105086247 + L2 LINE L2 1719 1837 -1477 1208 190 0 25 chr9 12776494 12776731 -105085896 - AluJb SINE Alu -16 296 66 313 285 29 81 chr9 12776847 12777409 -105085218 + L1MEd LINE L1 936 1357 -4774 21 0 0 0 chr9 12777835 12777856 -105084771 + AT_rich Low_complexity Low_complexity 1 21 0 230 109 16 47 chr9 12778071 12778135 -105084492 + (TA)n Simple_repeat Simple_repeat 1 62 0 965 342 18 10 chr9 12778891 12779286 -105083341 + LTR16A LTR ERVL 22 419 -31 386 271 60 26 chr9 12779734 12779885 -105082742 + L1MC4a LINE L1 5424 5579 -2229 1915 125 11 4 chr9 12779957 12780237 -105082390 - AluSx SINE Alu -30 282 1 975 74 5 58 chr9 12780237 12780427 -105082200 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 301 162 29 0 chr9 12780430 12780498 -105082129 + CT-rich Low_complexity Low_complexity 2 71 0 1349 201 56 26 chr9 12780515 12780696 -105081931 - AluJb SINE Alu 0 312 117 216 0 0 0 chr9 12780696 12780720 -105081907 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1349 201 56 26 chr9 12780720 12780841 -105081786 - AluJb SINE Alu -195 117 1 335 267 164 44 chr9 12780841 12781298 -105081329 + L1MC4a LINE L1 5844 6355 -1453 583 69 23 0 chr9 12781362 12781449 -105081178 - LTR19A LTR ERV1 -2 484 396 2038 172 79 0 chr9 12781459 12781900 -105080727 + L1MC2 LINE L1 5479 5954 -1831 1506 145 58 52 chr9 12781869 12782213 -105080414 + L1MB1 LINE L1 5819 6164 -4 * 394 313 10 10 chr9 12782474 12782682 -105079945 + L1MB1 LINE L1 5938 6145 -23 332 264 42 60 chr9 12782721 12782788 -105079839 + L1MC2 LINE L1 5971 6038 -306 10427 50 1 0 chr9 12782788 12784817 -105077810 - L1PA5 LINE L1 -15 6139 4081 332 264 42 60 chr9 12784817 12784916 -105077711 + L1MC2 LINE L1 6038 6134 -210 4106 213 70 19 chr9 12784953 12786076 -105076551 + L1MC3 LINE L1 6597 7777 -8 636 238 0 0 chr9 12786090 12786212 -105076415 + L1MC4 LINE L1 6712 6833 -1209 231 284 58 82 chr9 12786373 12786581 -105076046 + L1MC4 LINE L1 6903 7105 -937 250 250 135 10 chr9 12786866 12786962 -105075665 + MIR SINE MIR 154 261 -1 2493 91 17 0 chr9 12787217 12787568 -105075059 - L1PA10 LINE L1 0 6168 5812 180 172 0 0 chr9 12787891 12787920 -105074707 + MER5A DNA MER1_type 129 157 -32 408 301 28 23 chr9 12788652 12788828 -105073799 + MER5B DNA MER1_type 1 177 -1 1476 255 54 22 chr9 12789373 12789820 -105072807 - MLT1H1 LTR MaLR -3 552 92 1951 199 41 21 chr9 12789824 12790260 -105072367 + MER34 LTR ERV1 1 445 -97 2717 138 5 13 chr9 12790277 12790782 -105071845 - L1P4 LINE L1 -475 6394 5893 282 115 0 0 chr9 12790785 12790837 -105071790 + (T)n Simple_repeat Simple_repeat 1 52 0 308 351 25 25 chr9 12790880 12791119 -105071508 - L1 LINE L1 -1022 5827 5589 787 310 7 19 chr9 12791510 12791929 -105070698 - L1P4 LINE L1 -486 6383 5970 278 23 0 68 chr9 12792011 12792055 -105070572 + (T)n Simple_repeat Simple_repeat 1 41 0 8040 251 62 26 chr9 12792055 12792844 -105069783 - L1P4 LINE L1 -964 5885 5126 362 21 21 0 chr9 12792844 12792891 -105069736 + (TG)n Simple_repeat Simple_repeat 1 48 0 8040 251 62 26 chr9 12792891 12793093 -105069534 - L1P4 LINE L1 -1723 5126 4933 2361 61 3 3 chr9 12793093 12793403 -105069224 + AluY SINE Alu 1 310 -1 8040 251 62 26 chr9 12793403 12795042 -105067585 - L1P4 LINE L1 -1916 4933 3160 2998 145 26 33 chr9 12795045 12795626 -105067001 - L1P4 LINE L1 -3952 2897 2321 10541 245 38 28 chr9 12795727 12796001 -105066626 - L1P4 LINE L1 -1005 5844 5574 180 0 0 0 chr9 12796001 12796021 -105066606 + (TTG)n Simple_repeat Simple_repeat 1 20 0 10541 245 38 28 chr9 12796021 12800127 -105062500 - L1P4 LINE L1 -1275 5574 1336 734 317 49 7 chr9 12800175 12800459 -105062168 - L1P4 LINE L1 -6553 296 1 * 1232 195 47 12 chr9 12800458 12800796 -105061831 - L1 LINE L1 -1584 4562 4213 * 4037 106 7 5 chr9 12800782 12801360 -105061267 + L1P LINE L1 3884 4462 -1684 4167 155 70 36 chr9 12802381 12803246 -105059381 + MER4D LTR ERV1 1 895 -8 500 165 21 10 chr9 12803260 12803357 -105059270 + MER4A LTR ERV1 1 98 -566 1761 170 3 22 chr9 12803357 12803709 -105058918 + MER4A LTR ERV1 261 664 0 2871 105 165 10 chr9 12803711 12804037 -105058590 + MER4A-int LTR ERV1 1 275 -6323 221 0 0 33 chr9 12804037 12804067 -105058560 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2871 105 165 10 chr9 12804067 12804290 -105058337 + MER4A-int LTR ERV1 275 686 -5912 375 23 0 0 chr9 12804361 12804405 -105058222 + (TAAAA)n Simple_repeat Simple_repeat 2 45 0 604 256 50 5 chr9 12804471 12804729 -105057898 + MER4A-int LTR ERV1 1861 2161 -4170 3885 150 14 23 chr9 12804806 12805446 -105057181 + MER4A-int LTR ERV1 198 831 -5927 1335 137 29 72 chr9 12805477 12805754 -105056873 + MER4A-int LTR ERV1 924 1188 -5570 4006 104 60 8 chr9 12805765 12806469 -105056158 + MER4A-int LTR ERV1 1756 2495 -4103 1340 158 67 8 chr9 12806469 12806709 -105055918 - LTR8 LTR ERV1 -434 257 4 2535 161 74 21 chr9 12806711 12807435 -105055192 + MER4A-int LTR ERV1 2736 4140 -2536 324 169 34 0 chr9 12807432 12807491 -105055136 + MER4A-int LTR ERV1 3626 3686 -2912 * 6131 111 59 15 chr9 12807485 12808530 -105054097 + MER4A-int LTR ERV1 3837 4927 -1671 9555 122 51 18 chr9 12808630 12810285 -105052342 + MER4A-int LTR ERV1 4876 6584 -14 519 134 31 21 chr9 12810304 12810401 -105052226 + MER4A LTR ERV1 1 98 -566 1757 160 0 23 chr9 12810452 12810752 -105051875 + MER4A LTR ERV1 372 664 0 285 322 62 17 chr9 12810859 12811036 -105051591 + MIR SINE MIR 78 262 0 1195 220 68 153 chr9 12811192 12811414 -105051213 - L1MC4 LINE L1 -959 7083 6844 419 102 0 159 chr9 12811414 12811502 -105051125 + MER84 LTR ERVI 1 74 -433 2793 175 22 0 chr9 12811502 12811993 -105050634 + MER84 LTR ERV1 2 503 -4 1195 220 68 153 chr9 12811993 12812363 -105050264 - L1MC4 LINE L1 -1196 6846 6461 1458 120 9 0 chr9 12812756 12812989 -105049638 - L1MA1 LINE L1 0 6302 6068 23 0 0 0 chr9 12813000 12813023 -105049604 + AT_rich Low_complexity Low_complexity 1 23 0 956 154 0 70 chr9 12814321 12814535 -105048092 + L1MA8 LINE L1 6085 6283 -8 336 155 99 14 chr9 12814566 12814637 -105047990 + L1ME2 LINE L1 5995 6071 -93 1500 209 118 112 chr9 12814730 12815477 -105047150 - LTR1B LTR ERV1 -75 751 1 25 0 0 0 chr9 12815627 12815652 -105046975 + AT_rich Low_complexity Low_complexity 1 25 0 1676 166 18 0 chr9 12815787 12816089 -105046538 - AluJb SINE Alu 0 307 1 763 219 0 114 chr9 12816838 12817066 -105045561 - MLT1A1 LTR MaLR 0 365 164 645 177 16 16 chr9 12817116 12817240 -105045387 + MLT1A1 LTR MaLR 230 353 -12 1949 181 36 32 chr9 12817685 12818234 -105044393 + MLT2A2 LTR ERVL 1 554 0 336 329 82 37 chr9 12818295 12818538 -105044089 - MIR SINE MIR -2 260 7 380 353 27 0 chr9 12818754 12818904 -105043723 - MIR SINE MIR -17 245 92 278 254 42 14 chr9 12819247 12819318 -105043309 + MIR SINE MIR 35 107 -155 240 177 32 65 chr9 12819358 12819420 -105043207 + MIR SINE MIR 201 260 -2 * 267 202 95 12 chr9 12819413 12819497 -105043130 + MIR SINE MIR 99 189 -73 496 188 0 0 chr9 12819518 12819598 -105043029 + Charlie5 DNA MER1_type 10 89 -2523 229 250 0 0 chr9 12820402 12820450 -105042177 + MLT1K LTR MaLR 202 249 -339 24 0 0 0 chr9 12822225 12822249 -105040378 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr9 12822719 12822748 -105039879 + AT_rich Low_complexity Low_complexity 1 29 0 821 221 16 112 chr9 12823183 12823432 -105039195 + MER8 DNA MER2_type 15 239 0 403 330 167 19 chr9 12823906 12824482 -105038145 - L1M4 LINE L1 -2263 3883 3223 222 37 0 0 chr9 12824545 12824572 -105038055 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 856 236 67 18 chr9 12824857 12825178 -105037449 + MSTD LTR MaLR 1 396 0 189 318 101 23 chr9 12825467 12825596 -105037031 - MIR SINE MIR -110 152 14 180 288 29 93 chr9 12825636 12825775 -105036852 + L2 LINE L2 3160 3289 -24 321 26 0 0 chr9 12826921 12826959 -105035668 + (TTA)n Simple_repeat Simple_repeat 2 39 0 375 43 0 0 chr9 12826963 12827009 -105035618 - L1PA11 LINE L1 -41 6133 6088 22 0 0 0 chr9 12827758 12827780 -105034847 + AT_rich Low_complexity Low_complexity 1 22 0 30 0 0 0 chr9 12829348 12829378 -105033249 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr9 12830516 12830544 -105032083 + AT_rich Low_complexity Low_complexity 1 28 0 2364 91 0 0 chr9 12830922 12831229 -105031398 + AluY SINE Alu 1 307 -4 2297 167 10 61 chr9 12832074 12832582 -105030045 - MER66B LTR ERV1 0 486 5 12482 244 37 34 chr9 12832585 12833082 -105029545 - MER66B-int LTR ERV1 0 6676 6182 2377 75 3 0 chr9 12833082 12833388 -105029239 - AluY SINE Alu -4 307 1 12482 244 37 34 chr9 12833388 12839940 -105022687 - MER66B-int LTR ERV1 -494 6182 1210 539 297 13 19 chr9 12840031 12840186 -105022441 - MER66B-int LTR ERV1 -3574 3102 2949 2920 228 79 27 chr9 12840281 12841057 -105021570 - MER66B-int LTR ERV1 -5571 1105 290 1354 163 105 25 chr9 12841060 12841337 -105021290 + THE1C LTR MaLR 77 375 0 2056 200 8 64 chr9 12841523 12842008 -105020619 - MER66B LTR ERV1 -4 482 25 345 294 49 14 chr9 12842418 12842561 -105020066 + MIR SINE MIR 101 248 -14 35 63 0 0 chr9 12842571 12842634 -105019993 + AT_rich Low_complexity Low_complexity 1 63 0 28 29 0 0 chr9 12842863 12842898 -105019729 + AT_rich Low_complexity Low_complexity 1 35 0 250 59 78 0 chr9 12842972 12843023 -105019604 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 2268 228 51 2 chr9 12844033 12844581 -105018046 - L1MD3 LINE L1 -20 7975 7401 354 289 0 0 chr9 12844584 12844667 -105017960 - MLT1F1 LTR MaLR -448 119 37 34 72 0 0 chr9 12844800 12844869 -105017758 + AT_rich Low_complexity Low_complexity 1 69 0 263 323 234 6 chr9 12844957 12845115 -105017512 + MIR SINE MIR 51 244 -18 225 83 0 0 chr9 12845411 12845447 -105017180 + (CATAA)n Simple_repeat Simple_repeat 1 36 0 198 0 0 0 chr9 12846525 12846547 -105016080 + (A)n Simple_repeat Simple_repeat 1 22 0 1937 132 43 35 chr9 12847357 12847729 -105014898 - THE1C LTR MaLR 0 375 1 207 0 0 0 chr9 12847895 12847918 -105014709 + (TA)n Simple_repeat Simple_repeat 1 23 0 207 0 0 0 chr9 12847917 12847940 -105014687 + (GA)n Simple_repeat Simple_repeat 2 24 0 35 54 0 0 chr9 12848388 12848444 -105014183 + AT_rich Low_complexity Low_complexity 1 56 0 213 414 0 0 chr9 12849354 12849465 -105013162 + MIR SINE MIR 34 144 -64 197 278 14 69 chr9 12849661 12849733 -105012894 - L2 LINE L2 -5 3267 3200 799 200 78 6 chr9 12852881 12853061 -105009566 - MLT1A1 LTR MaLR 0 365 173 208 389 14 22 chr9 12853197 12853336 -105009291 - MER5A DNA MER1_type -1 188 51 327 296 72 32 chr9 12853799 12853924 -105008703 - MIR SINE MIR -67 195 66 386 282 8 24 chr9 12854240 12854364 -105008263 + (CATA)n Simple_repeat Simple_repeat 2 123 0 365 293 57 21 chr9 12856041 12856181 -105006446 + LTR33 LTR ERVL 126 270 -251 30 45 0 0 chr9 12856926 12856970 -105005657 + AT_rich Low_complexity Low_complexity 1 44 0 2371 180 101 41 chr9 12856990 12857697 -105004930 + LTR28 LTR ERV1 1 634 -2 406 296 113 0 chr9 12858163 12858305 -105004322 + MIR SINE MIR 3 160 -102 245 164 36 0 chr9 12858535 12858590 -105004037 + (TA)n Simple_repeat Simple_repeat 2 58 0 2252 90 14 0 chr9 12858636 12858926 -105003701 - AluY SINE Alu -17 294 1 254 287 28 46 chr9 12859143 12859251 -105003376 + MIR SINE MIR 56 161 -101 390 309 73 36 chr9 12859271 12859491 -105003136 - L2 LINE L2 0 3313 3086 24 53 0 0 chr9 12860319 12860357 -105002270 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr9 12860841 12860862 -105001765 + AT_rich Low_complexity Low_complexity 1 21 0 216 296 102 11 chr9 12861263 12861351 -105001276 - MIR SINE MIR -87 175 80 221 0 0 33 chr9 12861995 12862025 -105000602 + (TATAA)n Simple_repeat Simple_repeat 5 33 0 21 36 0 0 chr9 12862027 12862055 -105000572 + AT_rich Low_complexity Low_complexity 1 28 0 424 34 0 17 chr9 12862980 12863039 -104999588 - L1PA3 LINE L1 -5 6150 6093 21 57 0 0 chr9 12863188 12863223 -104999404 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr9 12863527 12863552 -104999075 + AT_rich Low_complexity Low_complexity 1 25 0 185 350 70 40 chr9 12863625 12863825 -104998802 + MIR SINE MIR 2 207 -55 22 0 0 0 chr9 12865044 12865066 -104997561 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr9 12865089 12865117 -104997510 + AT_rich Low_complexity Low_complexity 1 28 0 344 172 83 0 chr9 12865176 12865333 -104997294 + (TATAA)n Simple_repeat Simple_repeat 5 174 0 509 198 11 88 chr9 12866684 12866860 -104995767 + MER66A LTR ERV1 97 303 -251 180 0 0 0 chr9 12867863 12867883 -104994744 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 513 370 35 0 chr9 12868369 12868599 -104994028 - ERVL LTR ERVL -426 5338 5101 1950 207 20 47 chr9 12868732 12869176 -104993451 - MSTB1 LTR MaLR 0 432 1 483 287 57 24 chr9 12869345 12869679 -104992948 + L1ME LINE L1 3860 4204 -1942 212 224 15 0 chr9 12869729 12869796 -104992831 + GA-rich Low_complexity Low_complexity 3 70 0 280 355 79 14 chr9 12870161 12870375 -104992252 - LTR16C LTR ERVL 0 491 264 225 282 24 0 chr9 12870755 12870840 -104991787 + L1ME LINE L1 4757 4843 -1303 250 104 21 0 chr9 12871328 12871376 -104991251 + L1MD2 LINE L1 6309 6357 -2 242 319 9 0 chr9 12871382 12871495 -104991132 + L1ME LINE L1 5333 5446 -718 2605 30 3 0 chr9 12871497 12871799 -104990828 + AluY SINE Alu 1 303 -8 3207 130 4 103 chr9 12872723 12873400 -104989227 - MER4B LTR ERV1 0 610 1 1671 202 124 5 chr9 12873873 12874284 -104988343 - MLT1C LTR MaLR -7 460 1 20738 47 0 5 chr9 12875042 12878423 -104984204 - L1PA5 LINE L1 -6 6148 2776 822 103 0 0 chr9 12878423 12878539 -104984088 + L1P LINE L1 1550 1665 -4481 341 191 71 12 chr9 12879734 12879818 -104982809 - MIR SINE MIR -34 228 140 507 217 89 56 chr9 12879843 12880015 -104982612 + L1ME LINE L1 4776 4952 -1194 969 252 38 33 chr9 12880032 12880596 -104982031 + L1ME LINE L1 5029 5586 -580 684 106 9 0 chr9 12880662 12880775 -104981852 + L1MC3 LINE L1 6926 7039 -746 442 202 10 10 chr9 12880791 12880895 -104981732 + L1MA6 LINE L1 5989 6092 -208 1804 120 94 7 chr9 12880897 12881196 -104981431 - THE1A LTR MaLR 0 355 31 1044 93 35 6 chr9 12881261 12881433 -104981194 + L1MA6 LINE L1 6124 6300 0 415 187 0 44 chr9 12881450 12881541 -104981086 + MLT1E2 LTR MaLR 87 173 -453 231 287 124 0 chr9 12881739 12881941 -104980686 - L1M4 LINE L1 -3761 2385 2159 2305 65 3 3 chr9 12881972 12882264 -104980363 - AluY SINE Alu -19 292 1 1282 253 110 22 chr9 12882385 12883125 -104979502 - L1ME2 LINE L1 -19 6145 5325 2117 121 0 3 chr9 12883368 12883675 -104978952 - AluSg SINE Alu -4 306 1 264 408 22 6 chr9 12884051 12884230 -104978397 + LTR16C LTR ERVL 131 312 -179 505 42 0 0 chr9 12884247 12884318 -104978309 - L1PB1 LINE L1 -2 6149 6079 1179 142 0 0 chr9 12884320 12884503 -104978124 - L1PB1 LINE L1 -173 5978 5796 2190 55 0 0 chr9 12884513 12884786 -104977841 + L1PA8 LINE L1 5900 6172 0 2058 120 20 11 chr9 12884789 12885013 -104977614 - L1PB1 LINE L1 -559 5592 5365 2801 50 43 25 chr9 12885013 12885409 -104977218 - L1PA5 LINE L1 -13 6141 5739 2058 120 20 11 chr9 12885409 12885576 -104977051 - L1PB1 LINE L1 -786 5365 5201 21 0 0 0 chr9 12886212 12886233 -104976394 + AT_rich Low_complexity Low_complexity 1 21 0 21 82 0 0 chr9 12886717 12886766 -104975861 + AT_rich Low_complexity Low_complexity 1 49 0 1372 208 13 35 chr9 12886881 12887194 -104975433 + AluJo SINE Alu 1 306 -6 429 109 0 0 chr9 12889007 12889071 -104973556 + (TA)n Simple_repeat Simple_repeat 1 64 0 321 26 0 0 chr9 12889644 12889682 -104972945 + (TA)n Simple_repeat Simple_repeat 1 38 0 383 222 51 51 chr9 12889748 12889865 -104972762 - LTR16C LTR ERVL -59 432 316 2123 178 28 30 chr9 12890100 12890533 -104972094 - MSTB1 LTR MaLR 0 432 1 289 300 0 0 chr9 12891244 12891344 -104971283 + L1M4 LINE L1 4230 4329 -1817 33 43 0 0 chr9 12891356 12891403 -104971224 + AT_rich Low_complexity Low_complexity 1 47 0 251 234 0 16 chr9 12891495 12891559 -104971068 + L1ME3A LINE L1 6073 6135 -35 24 0 0 0 chr9 12891570 12891594 -104971033 + AT_rich Low_complexity Low_complexity 1 24 0 255 301 0 0 chr9 12892498 12892581 -104970046 - MLT1D LTR MaLR -9 496 414 520 206 0 66 chr9 12892582 12892718 -104969909 - MLT1C LTR MaLR -330 137 11 790 294 97 98 chr9 12892815 12894001 -104968626 + L2 LINE L2 2084 3253 -60 21 0 0 0 chr9 12894120 12894141 -104968486 + AT_rich Low_complexity Low_complexity 1 21 0 531 309 25 6 chr9 12894249 12894411 -104968216 + MIR SINE MIR 48 212 -50 276 284 11 11 chr9 12895128 12895223 -104967404 + GA-rich Low_complexity Low_complexity 2 96 0 342 0 0 0 chr9 12896005 12896043 -104966584 + (TG)n Simple_repeat Simple_repeat 1 38 0 * 354 45 0 0 chr9 12896042 12896086 -104966541 + (GA)n Simple_repeat Simple_repeat 1 44 0 1697 180 136 18 chr9 12896739 12897122 -104965505 - MSTA LTR MaLR 0 428 1 6880 151 166 39 chr9 12897122 12898522 -104964105 - MSTA-int LTR MaLR 0 1580 3 1701 177 126 26 chr9 12898524 12898913 -104963714 - MSTA LTR MaLR 0 428 1 23 0 0 0 chr9 12898958 12898981 -104963646 + AT_rich Low_complexity Low_complexity 1 23 0 300 247 180 34 chr9 12899036 12899214 -104963413 - MLT1L LTR MaLR -7 608 405 232 271 0 0 chr9 12899752 12899811 -104962816 + MLT1I LTR MaLR 351 409 0 3028 151 20 2 chr9 12899830 12900333 -104962294 - MER41E LTR ERV1 0 512 1 1605 261 5 19 chr9 12900907 12901317 -104961310 - MER92A LTR ERV1 -8 404 1 1513 214 14 82 chr9 12902857 12903272 -104959355 - MLT1B LTR MaLR -3 387 1 4037 39 0 0 chr9 12903744 12904234 -104958393 - L1PA4 LINE L1 -1109 5037 4548 3298 34 4 0 chr9 12904233 12905195 -104957432 + L1PA4 LINE L1 5037 6154 -1 * 389 320 81 12 chr9 12905329 12905501 -104957126 - MER92A-int LTR ERV1 -4002 934 751 231 36 0 0 chr9 12905648 12905676 -104956951 + (T)n Simple_repeat Simple_repeat 1 28 0 397 297 67 68 chr9 12905775 12906397 -104956230 - MER92A-int LTR ERV1 -3309 4948 3237 1573 93 12 57 chr9 12906596 12906843 -104955784 + AluSp SINE Alu 64 299 -14 258 410 18 6 chr9 12907187 12907353 -104955274 - MER92A-int LTR ERV1 -4095 2706 2539 264 298 60 66 chr9 12908139 12908441 -104954186 - MER92A-int LTR ERV1 -4439 497 198 1161 231 98 34 chr9 12908711 12909097 -104953530 - MER92A LTR ERV1 0 412 2 24 0 0 0 chr9 12909477 12909501 -104953126 + AT_rich Low_complexity Low_complexity 1 24 0 2084 97 16 10 chr9 12909591 12909899 -104952728 - AluY SINE Alu -1 310 1 46 33 0 0 chr9 12910283 12910343 -104952284 + AT_rich Low_complexity Low_complexity 1 60 0 2488 38 3 0 chr9 12911321 12911611 -104951016 - AluY SINE Alu -20 291 1 1123 47 0 0 chr9 12911826 12911955 -104950672 - AluY SINE Alu -182 129 1 1919 107 17 20 chr9 12912132 12912432 -104950195 + AluSg1 SINE Alu 1 299 -10 203 208 19 0 chr9 12912527 12912580 -104950047 + (TA)n Simple_repeat Simple_repeat 2 55 0 24 0 0 0 chr9 12912749 12912773 -104949854 + AT_rich Low_complexity Low_complexity 1 24 0 814 238 0 0 chr9 12912773 12912945 -104949682 - FAM SINE Alu -3 172 1 915 153 17 17 chr9 12913468 12913645 -104948982 - L1MC1 LINE L1 -1 6332 6156 1649 177 13 13 chr9 12913951 12914251 -104948376 + AluJo SINE Alu 1 300 -12 548 336 6 6 chr9 12914273 12914466 -104948161 + MIR SINE MIR 33 223 -39 266 87 22 0 chr9 12915481 12915527 -104947100 + (TAGG)n Simple_repeat Simple_repeat 1 47 0 1696 230 43 22 chr9 12916479 12916982 -104945645 + L1MD2 LINE L1 5551 6076 -88 692 277 25 22 chr9 12916951 12917225 -104945402 + L1MD2 LINE L1 6070 6344 -15 * 432 0 0 0 chr9 12917877 12917925 -104944702 + (TG)n Simple_repeat Simple_repeat 1 48 0 227 301 169 0 chr9 12918155 12918238 -104944389 + MIR3 SINE MIR 95 191 -17 413 315 73 69 chr9 12918263 12918466 -104944161 + MIR SINE MIR 1 209 -53 2061 118 0 3 chr9 12918466 12918781 -104943846 + AluSx SINE Alu 1 314 0 413 315 73 69 chr9 12918781 12918835 -104943792 + MIR SINE MIR 209 261 -1 835 281 70 23 chr9 12919154 12919456 -104943171 - L2 LINE L2 -1 3312 2997 1179 204 127 8 chr9 12919829 12920191 -104942436 + L1PB1 LINE L1 4232 4636 -1510 677 100 46 15 chr9 12920421 12920551 -104942076 - L1M LINE L1 -872 5428 5295 * 5142 226 39 11 chr9 12920545 12922552 -104940075 - L1 LINE L1 -3488 3679 1618 3654 247 67 60 chr9 12922585 12923860 -104938767 - L1 LINE L1 -6023 1145 4 983 243 86 86 chr9 12923864 12924308 -104938319 + L1MD2 LINE L1 5698 6141 -218 1234 196 0 15 chr9 12924645 12924910 -104937717 - L1PB1 LINE L1 -1341 4805 4545 * 1623 150 15 1 chr9 12924906 12926156 -104936471 + L1PB1 LINE L1 4792 6151 0 24 32 0 0 chr9 12926156 12926187 -104936440 + AT_rich Low_complexity Low_complexity 1 31 0 2155 105 0 26 chr9 12926224 12926537 -104936090 - AluSg SINE Alu 0 310 6 21 36 0 0 chr9 12926718 12926746 -104935881 + AT_rich Low_complexity Low_complexity 1 28 0 250 333 0 43 chr9 12927253 12927346 -104935281 + MIR SINE MIR 49 137 -125 1010 252 119 7 chr9 12927434 12927736 -104934891 + L2 LINE L2 2454 2789 -525 581 175 42 121 chr9 12927784 12927950 -104934677 - MER2 DNA MER2_type -5 340 188 337 260 75 55 chr9 12928440 12928586 -104934041 + MIR SINE MIR 66 214 -48 235 374 40 52 chr9 12929996 12930170 -104932457 - L2 LINE L2 -968 2346 2175 22 0 0 0 chr9 12932140 12932162 -104930465 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 12933658 12933679 -104928948 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr9 12933913 12933941 -104928686 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr9 12934027 12934048 -104928579 + AT_rich Low_complexity Low_complexity 1 21 0 1178 308 108 31 chr9 12934697 12935189 -104927438 + L2 LINE L2 2091 2646 -668 2314 88 3 3 chr9 12935189 12935497 -104927130 - AluSc SINE Alu -1 308 1 1178 308 108 31 chr9 12935497 12935651 -104926976 + L2 LINE L2 2646 2787 -527 901 247 55 105 chr9 12935652 12936142 -104926485 + MLT1G1 LTR MaLR 1 452 -115 589 312 18 52 chr9 12936222 12936504 -104926123 + L2 LINE L2 2777 3050 -263 2120 135 0 0 chr9 12936504 12936816 -104925811 + AluSx SINE Alu 1 312 0 390 129 0 14 chr9 12936931 12937001 -104925626 - L1MA9 LINE L1 -5 6307 6239 1151 120 17 0 chr9 12937002 12937177 -104925450 - L1MA9 LINE L1 -149 6163 5986 391 244 109 67 chr9 12937178 12937371 -104925256 + L2 LINE L2 3113 3313 0 278 215 13 0 chr9 12937384 12937463 -104925164 + (TGGA)n Simple_repeat Simple_repeat 2 81 0 207 0 0 0 chr9 12938337 12938360 -104924267 + (TG)n Simple_repeat Simple_repeat 2 24 0 556 270 152 5 chr9 12938715 12938919 -104923708 + MIR SINE MIR 1 234 -28 254 336 66 69 chr9 12940103 12940466 -104922161 - MLT1J LTR MaLR -145 366 5 222 118 0 0 chr9 12940650 12940684 -104921943 + (CA)n Simple_repeat Simple_repeat 2 35 0 211 217 0 22 chr9 12941735 12941781 -104920846 + GA-rich Low_complexity Low_complexity 4 48 0 22 70 0 0 chr9 12941890 12941933 -104920694 + AT_rich Low_complexity Low_complexity 1 43 0 275 284 153 34 chr9 12942039 12942080 -104920547 - MIR SINE MIR -3 259 224 884 206 44 136 chr9 12942080 12942492 -104920135 - MLT1A2 LTR MaLR 0 374 1 275 284 153 34 chr9 12942492 12942626 -104920001 - MIR SINE MIR -38 224 63 237 336 67 51 chr9 12942693 12943143 -104919484 + HAL1b LINE L1 231 687 -661 288 77 0 0 chr9 12943327 12943366 -104919261 + (TAGA)n Simple_repeat Simple_repeat 3 41 0 876 214 74 72 chr9 12944524 12944996 -104917631 + MER92C LTR ERV1 1 552 -2 2210 92 7 3 chr9 12945966 12946271 -104916356 + AluY SINE Alu 1 306 -5 2154 135 28 0 chr9 12947060 12947386 -104915241 - MER1B DNA MER1_type -1 336 2 1741 251 101 70 chr9 12947621 12947991 -104914636 + LTR49-int LTR ERV1 738 1095 -3841 1718 216 15 48 chr9 12947991 12948449 -104914178 - LTR47B LTR ERVL 0 443 1 1741 251 101 70 chr9 12948449 12949832 -104912795 + LTR49-int LTR ERV1 1095 2611 -2325 803 249 42 54 chr9 12949820 12950154 -104912473 + LTR49-int LTR ERV1 2724 3053 -1883 * 1268 268 80 14 chr9 12950930 12951035 -104911592 + LTR49-int LTR ERV1 3337 3434 -1502 189 0 0 0 chr9 12951035 12951056 -104911571 + (TGAA)n Simple_repeat Simple_repeat 4 24 0 1268 268 80 14 chr9 12951056 12951386 -104911241 + LTR49-int LTR ERV1 3434 3801 -1135 443 257 0 9 chr9 12951423 12951536 -104911091 + MER67D LTR ERV1 1 112 -402 351 253 273 5 chr9 12951537 12951683 -104910944 + MER39 LTR ERV1 1 133 -574 422 295 7 14 chr9 12951693 12951832 -104910795 + LTR29 LTR ERV1 233 370 -252 2063 199 101 81 chr9 12951832 12952562 -104910065 + LTR49-int LTR ERV1 472 1216 -5115 264 303 0 26 chr9 12952562 12952638 -104909989 + tRNA-Glu-GAG tRNA tRNA 2 75 0 1551 63 14 5 chr9 12952860 12953081 -104909546 + L1PA13 LINE L1 5940 6162 -1 1874 154 146 11 chr9 12954605 12954982 -104907645 + MSTA LTR MaLR 1 428 0 201 94 0 0 chr9 12955122 12955154 -104907473 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 25 0 0 0 chr9 12955544 12955569 -104907058 + AT_rich Low_complexity Low_complexity 1 25 0 1646 187 48 3 chr9 12955698 12956072 -104906555 - L1 LINE L1 -2652 3494 3104 1713 214 96 43 chr9 12956169 12956636 -104905991 - MER89 LTR ERV1 0 559 68 1438 212 70 47 chr9 12956666 12957210 -104905417 + MER52A LTR ERV1 1 729 -549 * 1460 120 20 83 chr9 12957198 12957499 -104905128 + MER52C LTR ERV1 997 1278 0 365 109 0 0 chr9 12957501 12957556 -104905071 - MER89 LTR ERV1 -504 55 1 238 281 70 8 chr9 12957785 12957913 -104904714 + MER67C LTR ERV1 37 172 -538 446 251 53 16 chr9 12957999 12958186 -104904441 + MER67C LTR ERV1 498 691 -19 402 271 54 54 chr9 12958197 12958455 -104904172 - MER34B LTR ERV1 -4 561 304 245 29 29 0 chr9 12959150 12959184 -104903443 + (TTC)n Simple_repeat Simple_repeat 3 37 0 1673 204 7 3 chr9 12959193 12959502 -104903125 - AluJo SINE Alu -2 310 1 1047 259 58 10 chr9 12959593 12960050 -104902577 + MER92B LTR ERV1 1 552 -2 26 64 0 0 chr9 12960446 12960493 -104902134 + AT_rich Low_complexity Low_complexity 1 47 0 349 337 26 26 chr9 12960910 12961103 -104901524 + L1MEc LINE L1 1769 1961 -4435 375 283 31 102 chr9 12961913 12962139 -104900488 + HAL1 LINE L1 1360 1569 -938 213 39 0 0 chr9 12963459 12963485 -104899142 + (TTTTA)n Simple_repeat Simple_repeat 1 26 0 4943 172 45 30 chr9 12963485 12963917 -104898710 - L1MC1 LINE L1 -10 6323 5899 2833 118 13 45 chr9 12963917 12964385 -104898242 + MLT2A2 LTR ERVL 1 453 0 4943 172 45 30 chr9 12964385 12964967 -104897660 - L1MC1 LINE L1 -434 5899 5293 951 210 0 5 chr9 12964971 12965157 -104897470 - AluJb SINE Alu 0 312 128 2579 241 41 4 chr9 12965158 12965917 -104896710 - L1MC1 LINE L1 -820 5326 4540 625 82 49 8 chr9 12966493 12966615 -104896012 + CT-rich Low_complexity Low_complexity 2 128 0 978 199 11 0 chr9 12966645 12966821 -104895806 - U2 snRNA snRNA -10 178 1 330 306 24 47 chr9 12966853 12967023 -104895604 + MLT1J2 LTR MaLR 252 417 -33 188 0 74 0 chr9 12967553 12967580 -104895047 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 547 313 110 19 chr9 12968129 12968620 -104894007 + L1M4 LINE L1 947 1533 -4902 447 341 29 6 chr9 12969282 12969455 -104893172 - LTR16A1 LTR ERVL -55 402 226 189 0 0 0 chr9 12969478 12969499 -104893128 + (TTTTTA)n Simple_repeat Simple_repeat 3 23 0 10216 30 0 0 chr9 12969509 12971501 -104891126 - L1PA4 LINE L1 -4 6151 4168 21 0 0 0 chr9 12972876 12972897 -104889730 + AT_rich Low_complexity Low_complexity 1 21 0 1562 184 63 25 chr9 12973152 12973516 -104889111 - MLT1C LTR MaLR -1 466 89 39 60 0 0 chr9 12973660 12973727 -104888900 + AT_rich Low_complexity Low_complexity 1 67 0 1241 50 25 0 chr9 12973769 12973928 -104888699 + L1PA4 LINE L1 5991 6153 -2 519 265 53 35 chr9 12974416 12974586 -104888041 + MIR SINE MIR 30 202 -60 439 302 57 12 chr9 12974594 12975052 -104887575 + L1M4 LINE L1 3025 3495 -2887 856 180 85 0 chr9 12975143 12975332 -104887295 + L1MA4 LINE L1 6085 6289 -11 21 0 0 0 chr9 12975553 12975574 -104887053 + AT_rich Low_complexity Low_complexity 1 21 0 25760 159 12 16 chr9 12975725 12982200 -104880427 - L1PA8 LINE L1 0 6487 14 378 308 65 33 chr9 12982451 12982665 -104879962 + L1M4 LINE L1 4388 4608 -1774 958 205 51 77 chr9 12982770 12983116 -104879511 - L1MB7 LINE L1 0 6178 5856 441 234 81 8 chr9 12983104 12983228 -104879399 + L1M4 LINE L1 5732 5864 -550 * 226 354 13 0 chr9 12983445 12983524 -104879103 - L2 LINE L2 0 3313 3234 30 59 0 0 chr9 12983561 12983612 -104879015 + AT_rich Low_complexity Low_complexity 1 51 0 444 366 33 36 chr9 12983637 12983970 -104878657 - L2 LINE L2 -157 3156 2825 254 313 21 0 chr9 12983980 12984076 -104878551 - L2 LINE L2 -1243 2071 1974 236 340 53 44 chr9 12984172 12984378 -104878249 - L2 LINE L2 -1368 1946 1739 2310 97 0 10 chr9 12986578 12986887 -104875740 + AluY SINE Alu 1 306 -5 528 228 35 14 chr9 12986902 12987047 -104875580 + L1MC5 LINE L1 6971 7118 -843 210 128 0 0 chr9 12987047 12987086 -104875541 + (TC)n Simple_repeat Simple_repeat 1 39 0 488 239 26 0 chr9 12987091 12987204 -104875423 - FLAM_A SINE Alu -17 116 1 920 247 69 10 chr9 12987205 12987509 -104875118 + L1MC5 LINE L1 7105 7426 -535 711 186 124 11 chr9 12987599 12987776 -104874851 - MER3 DNA MER1_type -8 201 5 591 254 40 22 chr9 12987902 12988177 -104874450 + L1MC5 LINE L1 7629 7908 -53 638 199 118 39 chr9 12988197 12988276 -104874351 + Charlie2 DNA MER1_type 2496 2567 -295 1957 46 0 4 chr9 12988276 12988515 -104874112 - AluY SINE Alu 0 311 74 638 199 118 39 chr9 12988515 12988766 -104873861 + Charlie2 DNA MER1_type 2567 2852 -10 182 386 10 20 chr9 12988789 12988890 -104873737 - MER5A DNA MER1_type -45 144 45 257 369 80 23 chr9 12990904 12991080 -104871547 + MIR3 SINE MIR 16 201 -7 232 324 0 0 chr9 12991244 12991312 -104871315 + MER69 DNA AcHobo 5 72 -2454 506 245 32 16 chr9 12991313 12991501 -104871126 + MER69 DNA AcHobo 2332 2522 -4 27 29 0 0 chr9 12991604 12991638 -104870989 + AT_rich Low_complexity Low_complexity 1 34 0 3281 78 39 0 chr9 12991698 12992134 -104870493 - MLT2A2 LTR ERVL 0 453 1 207 0 0 0 chr9 12992242 12992265 -104870362 + (CAA)n Simple_repeat Simple_repeat 2 24 0 283 259 0 0 chr9 12992360 12992418 -104870209 + HsTC2 DNA Tc2 94 151 -1747 990 198 60 16 chr9 12992508 12992824 -104869803 + L1ME1 LINE L1 1413 1879 -4547 560 133 0 0 chr9 12992851 12992949 -104869678 - L1MA4 LINE L1 -5 6295 6198 7149 183 31 6 chr9 12993051 12993603 -104869024 - L1 LINE L1 -1068 5078 4541 216 0 0 0 chr9 12993603 12993627 -104869000 + (TG)n Simple_repeat Simple_repeat 2 25 0 7149 183 31 6 chr9 12993627 12994136 -104868491 - L1 LINE L1 -1605 4541 3967 6244 113 25 39 chr9 12994136 12995158 -104867469 - LTR13 LTR ERVK 0 1007 1 7149 183 31 6 chr9 12995158 12995571 -104867056 - L1 LINE L1 -2179 3967 3566 548 199 7 28 chr9 12995574 12995715 -104866912 + L1ME1 LINE L1 1815 1952 -4474 1921 151 0 7 chr9 12995776 12996087 -104866540 + AluSx SINE Alu 1 309 0 3340 224 53 99 chr9 12996224 12997265 -104865362 + L1ME1 LINE L1 3921 4844 -1582 2983 114 16 5 chr9 12997265 12997702 -104864925 + MLT2A1 LTR ERVL 1 442 -2 3340 224 53 99 chr9 12997702 12998467 -104864160 + L1ME1 LINE L1 4844 5643 -783 480 221 55 21 chr9 12998479 12998624 -104864003 + L1M3f LINE L1 15 164 -5164 680 194 18 18 chr9 12998631 12998801 -104863826 + L1MA4 LINE L1 6126 6295 -5 336 208 83 33 chr9 12998801 12998921 -104863706 + L1ME1 LINE L1 5643 5768 -846 415 216 62 0 chr9 12998937 12999034 -104863593 + L1ME1 LINE L1 6154 6256 -190 42390 36 21 3 chr9 12999274 13005312 -104857315 + L1PA3 LINE L1 3 6155 0 23 0 0 0 chr9 13005651 13005674 -104856953 + AT_rich Low_complexity Low_complexity 1 23 0 25 90 0 0 chr9 13005741 13005808 -104856819 + AT_rich Low_complexity Low_complexity 1 67 0 756 65 0 0 chr9 13005834 13005941 -104856686 + (TAGA)n Simple_repeat Simple_repeat 4 110 0 21 0 0 0 chr9 13006444 13006465 -104856162 + AT_rich Low_complexity Low_complexity 1 21 0 5686 66 4 0 chr9 13006826 13007566 -104855061 + L1PA8 LINE L1 5424 6166 -6 5210 166 35 27 chr9 13008979 13010394 -104852233 + L1MA8 LINE L1 4802 6224 -67 508 43 145 0 chr9 13010394 13010463 -104852164 + MADE1 DNA Mariner 1 79 -1 5210 166 35 27 chr9 13010463 13010529 -104852098 + L1MA8 LINE L1 6224 6288 -3 2558 134 44 2 chr9 13010811 13011220 -104851407 + MSTA LTR MaLR 1 426 -2 283 270 0 0 chr9 13011581 13011644 -104850983 + MER5A DNA MER1_type 7 69 -120 2393 301 90 28 chr9 13012361 13013584 -104849043 + L1MEc LINE L1 35 1333 -5063 3281 66 0 2 chr9 13013746 13014170 -104848457 - L1PA7 LINE L1 -4 6150 5728 718 306 31 9 chr9 13014447 13014676 -104847951 + MIR SINE MIR 7 240 -22 1112 110 0 19 chr9 13014840 13014994 -104847633 + AluSq/x SINE Alu 1 151 -162 556 169 145 6 chr9 13015094 13015260 -104847367 + AluSg/x SINE Alu 117 305 -4 34 42 0 0 chr9 13015370 13015418 -104847209 + AT_rich Low_complexity Low_complexity 1 48 0 309 372 54 0 chr9 13016035 13016183 -104846444 - MLT1K LTR MaLR -197 391 236 259 371 91 8 chr9 13016443 13016707 -104845920 + L2 LINE L2 2534 2819 -495 2089 61 93 4 chr9 13017886 13018165 -104844462 + AluY SINE Alu 1 304 -7 2285 108 0 0 chr9 13018601 13018907 -104843720 + AluY SINE Alu 1 306 -5 186 43 0 0 chr9 13019190 13019213 -104843414 + (TC)n Simple_repeat Simple_repeat 2 24 0 1178 182 108 130 chr9 13019504 13019911 -104842716 - MLT2B2 LTR ERVL 0 515 118 270 0 0 0 chr9 13019918 13019948 -104842679 + (GA)n Simple_repeat Simple_repeat 2 31 0 545 160 150 0 chr9 13019948 13020048 -104842579 - MLT2B3 LTR ERVL -322 232 118 198 0 0 0 chr9 13020055 13020077 -104842550 + (GA)n Simple_repeat Simple_repeat 2 23 0 551 160 150 0 chr9 13020077 13020177 -104842450 - MLT2B3 LTR ERVL -322 232 118 216 0 0 0 chr9 13020184 13020208 -104842419 + (GA)n Simple_repeat Simple_repeat 2 25 0 535 170 150 0 chr9 13020208 13020308 -104842319 - MLT2B3 LTR ERVL -322 232 118 1188 190 69 0 chr9 13020334 13020550 -104842077 - MLT2B3 LTR ERVL -323 231 1 387 380 79 0 chr9 13020556 13020785 -104841842 + MIR SINE MIR 13 259 -3 1474 210 39 47 chr9 13021348 13021581 -104841046 - MLT1B LTR MaLR -12 378 148 2453 73 0 13 chr9 13021581 13021896 -104840731 + AluY SINE Alu 1 311 0 1474 210 39 47 chr9 13021896 13022043 -104840584 - MLT1B LTR MaLR -242 148 1 712 271 40 29 chr9 13022475 13022748 -104839879 + LTR16A LTR ERVL 86 361 -89 4849 161 11 14 chr9 13022848 13023336 -104839291 + L1PB4 LINE L1 4950 5438 -718 1684 196 3 3 chr9 13023336 13023632 -104838995 + AluJb SINE Alu 3 298 -14 4849 161 11 14 chr9 13023632 13024340 -104838287 + L1PB4 LINE L1 5438 6149 -7 200 276 0 79 chr9 13024679 13024755 -104837872 + L2 LINE L2 3161 3230 -42 914 197 110 99 chr9 13025077 13025612 -104837015 + MER67C LTR ERV1 1 466 0 279 221 79 57 chr9 13026396 13026536 -104836091 - L1ME4a LINE L1 -11 6110 5968 562 332 49 0 chr9 13026557 13026762 -104835865 - MIR SINE MIR -27 235 21 423 293 56 26 chr9 13026763 13027029 -104835598 - L1ME4a LINE L1 -335 5786 5513 23 54 0 0 chr9 13027116 13027153 -104835474 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr9 13027716 13027739 -104834888 + AT_rich Low_complexity Low_complexity 1 23 0 266 315 52 56 chr9 13027827 13028040 -104834587 - L2 LINE L2 -6 3307 3096 23 0 0 0 chr9 13028657 13028680 -104833947 + AT_rich Low_complexity Low_complexity 1 23 0 473 219 10 0 chr9 13029646 13029742 -104832885 + Charlie5 DNA MER1_type 142 238 -2374 233 98 24 0 chr9 13029756 13029797 -104832830 + Charlie5 DNA MER1_type 2530 2571 -41 1324 198 20 3 chr9 13029802 13030100 -104832527 - L1MA7 LINE L1 -1 6290 5988 258 333 12 42 chr9 13030153 13030321 -104832306 - MIR SINE MIR -1 261 99 270 0 0 0 chr9 13030417 13030447 -104832180 + (TG)n Simple_repeat Simple_repeat 2 31 0 5726 154 36 7 chr9 13031267 13032282 -104830345 + L1MC1 LINE L1 5288 6332 -1 1234 170 0 5 chr9 13032463 13032663 -104829964 + AluJb SINE Alu 85 283 -29 859 159 10 66 chr9 13032690 13032888 -104829739 + L1MC1 LINE L1 6037 6211 -122 772 278 53 56 chr9 13033782 13034249 -104828378 + L1ME LINE L1 490 955 -5575 765 278 138 47 chr9 13034237 13034955 -104827672 + L1ME LINE L1 846 1593 -4947 * 1295 251 86 53 chr9 13034936 13036303 -104826324 + L1ME LINE L1 1889 3292 -3248 26 0 0 0 chr9 13036694 13036720 -104825907 + AT_rich Low_complexity Low_complexity 1 26 0 828 256 89 63 chr9 13037165 13037594 -104825033 - MER67D LTR ERV1 -8 506 67 44 0 0 0 chr9 13037898 13037942 -104824685 + AT_rich Low_complexity Low_complexity 1 44 0 282 363 16 44 chr9 13038340 13038522 -104824105 - MIR SINE MIR -82 180 4 228 111 0 0 chr9 13039599 13039635 -104822992 + (CATATA)n Simple_repeat Simple_repeat 5 40 0 333 0 0 0 chr9 13039777 13039814 -104822813 + (TG)n Simple_repeat Simple_repeat 1 37 0 192 77 0 0 chr9 13040029 13040055 -104822572 + (CAG)n Simple_repeat Simple_repeat 1 26 0 947 236 81 24 chr9 13041732 13042193 -104820434 - MLT1E1 LTR MaLR 0 593 119 1994 252 101 24 chr9 13042480 13043418 -104819209 - L1MEc LINE L1 -2843 4114 3104 1910 292 17 10 chr9 13043420 13044006 -104818621 + MER90 LTR ERV1 1 590 -24 1570 277 76 27 chr9 13044042 13044603 -104818024 - L1MEc LINE L1 -4011 3127 2504 2840 150 8 10 chr9 13044603 13045091 -104817536 - L1PA16 LINE L1 -3 6163 5677 1570 277 76 27 chr9 13045091 13045442 -104817185 - L1MEc LINE L1 -4634 2504 2171 325 246 188 29 chr9 13045456 13045733 -104816894 - L1MC5 LINE L1 -36 7925 7605 1740 176 80 41 chr9 13045734 13046273 -104816354 - MLT2A2 LTR ERVL -2 552 1 22 0 0 0 chr9 13046288 13046310 -104816317 + AT_rich Low_complexity Low_complexity 1 22 0 1988 110 0 4 chr9 13046424 13046729 -104815898 - AluY SINE Alu 0 304 1 275 343 106 25 chr9 13046966 13047211 -104815416 + L2 LINE L2 1707 1971 -1343 342 0 0 0 chr9 13047404 13047442 -104815185 + (TC)n Simple_repeat Simple_repeat 1 38 0 416 302 76 44 chr9 13047510 13047749 -104814878 - MLT1F LTR MaLR -291 264 19 1185 160 9 5 chr9 13047864 13048083 -104814544 - L1MA5A LINE L1 -6 6291 6072 301 327 60 22 chr9 13048157 13048474 -104814153 - L1MEc LINE L1 -4864 2093 1781 247 263 0 0 chr9 13048480 13048537 -104814090 - L1PA16 LINE L1 -15 6151 6095 * 799 237 39 2 chr9 13048506 13048733 -104813894 - L1PA16 LINE L1 -73 6092 5858 514 289 102 29 chr9 13048734 13049028 -104813599 - L1MEc LINE L1 -5223 1738 1373 2318 69 3 31 chr9 13049333 13049652 -104812975 - AluY SINE Alu -1 310 1 30 45 0 0 chr9 13050269 13050313 -104812314 + AT_rich Low_complexity Low_complexity 1 44 0 243 300 69 85 chr9 13051351 13051481 -104811146 - L2 LINE L2 -8 3264 3137 333 254 91 9 chr9 13051511 13051621 -104811006 + MER91B DNA MER1_type 11 129 -61 271 161 0 0 chr9 13052095 13052151 -104810476 + L1MC4 LINE L1 6648 6703 -1339 217 146 55 0 chr9 13052299 13052354 -104810273 + (TA)n Simple_repeat Simple_repeat 2 59 0 282 330 199 23 chr9 13053734 13053955 -104808672 - MLT1K LTR MaLR -201 387 128 996 190 10 10 chr9 13054395 13054600 -104808027 + MER3 DNA MER1_type 1 205 -4 685 243 60 46 chr9 13055482 13055700 -104806927 + MIR SINE MIR 41 261 -1 314 58 39 0 chr9 13056286 13056338 -104806289 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 307 339 34 25 chr9 13058707 13058825 -104803802 + L2 LINE L2 3144 3262 -10 1149 227 131 28 chr9 13059205 13059615 -104803012 - MER66A LTR ERV1 -4 474 122 691 310 24 20 chr9 13059714 13059969 -104802658 - MER90 LTR ERV1 -1 613 358 216 0 0 0 chr9 13059969 13059993 -104802634 + (T)n Simple_repeat Simple_repeat 1 24 0 2321 77 6 16 chr9 13060923 13061236 -104801391 + AluY SINE Alu 1 310 -1 456 315 30 75 chr9 13061883 13062067 -104800560 - MLT1K LTR MaLR -2 586 418 216 0 0 0 chr9 13062067 13062091 -104800536 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 456 315 30 75 chr9 13062091 13062201 -104800426 - MLT1K LTR MaLR -170 418 305 363 313 125 11 chr9 13062203 13062379 -104800248 + LTR16C LTR ERVL 4 199 -292 550 230 32 0 chr9 13062446 13062572 -104800055 + LTR16C LTR ERVL 358 487 -4 13265 147 33 20 chr9 13063200 13065589 -104797038 + Tigger1 DNA MER2_type 1 2418 0 320 337 89 0 chr9 13067126 13067227 -104795400 + MIR3 SINE MIR 84 193 -15 24 53 0 0 chr9 13067636 13067674 -104794953 + AT_rich Low_complexity Low_complexity 1 38 0 602 255 24 106 chr9 13068388 13068643 -104793984 - MIR SINE MIR -24 238 5 251 439 14 0 chr9 13068799 13068947 -104793680 + MIR3 SINE MIR 31 180 -28 183 410 0 48 chr9 13070701 13070806 -104791821 + MIR SINE MIR 16 115 -93 609 319 47 21 chr9 13071463 13071698 -104790929 + LTR33 LTR ERVL 10 250 -271 6816 35 4 0 chr9 13071868 13072687 -104789940 - L1PA5 LINE L1 0 6154 5333 467 330 73 31 chr9 13073560 13073984 -104788643 + MLT1J1 LTR MaLR 1 442 -4 21 0 0 0 chr9 13074021 13074042 -104788585 + AT_rich Low_complexity Low_complexity 1 21 0 209 373 125 25 chr9 13074156 13074588 -104788039 - L2 LINE L2 -26 3287 2813 1205 322 99 6 chr9 13074676 13075189 -104787438 + MLT1G1 LTR MaLR 3 563 -32 646 322 46 21 chr9 13075244 13075483 -104787144 + MIR SINE MIR 7 251 -11 207 0 0 0 chr9 13075863 13075886 -104786741 + (A)n Simple_repeat Simple_repeat 1 23 0 643 109 0 157 chr9 13076311 13076458 -104786169 + AluSg/x SINE Alu 159 282 -30 22 0 0 0 chr9 13076587 13076609 -104786018 + AT_rich Low_complexity Low_complexity 1 22 0 366 270 111 21 chr9 13076624 13076813 -104785814 - MIR SINE MIR -47 215 10 4097 184 29 55 chr9 13077234 13078584 -104784043 + L1MA6 LINE L1 4991 6295 -5 1528 104 101 56 chr9 13078596 13078864 -104783763 + AluY SINE Alu 19 298 -13 238 188 16 47 chr9 13079651 13079715 -104782912 + CT-rich Low_complexity Low_complexity 5 66 0 1503 114 61 8 chr9 13081006 13081252 -104781375 + MER44D DNA MER2_type 2 530 -79 1404 174 87 53 chr9 13081253 13081629 -104780998 - MER66A LTR ERV1 -3 475 97 1933 177 49 38 chr9 13081651 13082194 -104780433 - MLT2A2 LTR ERVL 0 554 1 282 246 18 0 chr9 13082375 13082432 -104780195 + MER44D DNA MER2_type 547 604 -1 22 0 0 0 chr9 13082882 13082904 -104779723 + AT_rich Low_complexity Low_complexity 1 22 0 496 271 93 19 chr9 13083478 13083692 -104778935 - MIR SINE MIR -1 261 32 212 133 67 50 chr9 13083743 13083803 -104778824 + MIR SINE MIR 106 166 -96 728 311 37 87 chr9 13083961 13084310 -104778317 + L2 LINE L2 2620 2912 -401 2249 105 0 3 chr9 13084310 13084615 -104778012 - AluY SINE Alu -7 304 1 728 311 37 87 chr9 13084615 13084998 -104777629 + L2 LINE L2 2912 3313 0 23 0 0 0 chr9 13085415 13085438 -104777189 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr9 13085568 13085591 -104777036 + AT_rich Low_complexity Low_complexity 1 23 0 204 125 0 0 chr9 13085917 13085949 -104776678 + (T)n Simple_repeat Simple_repeat 1 32 0 222 308 100 50 chr9 13087115 13087235 -104775392 + MIR3 SINE MIR 2 127 -81 23 68 0 0 chr9 13090648 13090692 -104771935 + AT_rich Low_complexity Low_complexity 1 44 0 1223 142 51 123 chr9 13091736 13092068 -104770559 + AluJb SINE Alu 1 308 -4 225 170 30 150 chr9 13092161 13092261 -104770366 + L1ME4a LINE L1 5935 6022 -99 7528 186 37 10 chr9 13092437 13094221 -104768406 + L1M2 LINE L1 3700 5536 -743 201 379 103 0 chr9 13094289 13094405 -104768222 + MIR SINE MIR 19 146 -116 11005 206 31 34 chr9 13095338 13095725 -104766902 - L1MA4A LINE L1 -23 6982 6595 357 43 0 0 chr9 13095725 13095772 -104766855 + (TG)n Simple_repeat Simple_repeat 2 48 0 11005 206 31 34 chr9 13095772 13096098 -104766529 - L1MA4A LINE L1 -410 6595 6270 207 0 0 0 chr9 13096098 13096121 -104766506 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 11005 206 31 34 chr9 13096121 13096585 -104766042 - L1MA4A LINE L1 -735 6270 5806 1783 157 62 20 chr9 13096585 13096942 -104765685 + THE1C LTR MaLR 1 372 -3 11005 206 31 34 chr9 13096942 13097978 -104764649 - L1MA4A LINE L1 -1199 5806 4769 2054 116 7 3 chr9 13097978 13098270 -104764357 - AluY SINE Alu -18 293 1 11005 206 31 34 chr9 13098270 13100646 -104761981 - L1MA4A LINE L1 -2236 4769 2442 185 0 0 39 chr9 13100646 13100672 -104761955 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 11005 206 31 34 chr9 13100672 13101325 -104761302 - L1MA4A LINE L1 -4563 2442 1789 4497 183 38 49 chr9 13101337 13101509 -104761118 - L1PB3 LINE L1 0 6154 5982 207 0 0 0 chr9 13101509 13101532 -104761095 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1838 161 0 0 chr9 13101532 13101806 -104760821 - AluSx SINE Alu -28 284 11 4497 183 38 49 chr9 13101806 13102059 -104760568 - L1PB3 LINE L1 -171 5983 5729 222 37 0 0 chr9 13102059 13102086 -104760541 + (TG)n Simple_repeat Simple_repeat 1 27 0 4497 183 38 49 chr9 13102086 13103535 -104759092 - L1PB3 LINE L1 -425 5729 4300 4290 284 26 2 chr9 13103538 13104722 -104757905 - L1MA4A LINE L1 -5058 1791 580 665 298 0 0 chr9 13104739 13104900 -104757727 - L1MA4A LINE L1 -6368 481 321 23 33 0 0 chr9 13104932 13104962 -104757665 + AT_rich Low_complexity Low_complexity 1 30 0 21 57 0 0 chr9 13104992 13105027 -104757600 + AT_rich Low_complexity Low_complexity 1 35 0 28 48 0 0 chr9 13105305 13105347 -104757280 + AT_rich Low_complexity Low_complexity 1 42 0 22 56 0 0 chr9 13105775 13105811 -104756816 + AT_rich Low_complexity Low_complexity 1 36 0 3255 48 0 106 chr9 13106150 13106651 -104755976 - LTR7 LTR ERV1 -2 448 1 21 0 0 0 chr9 13107821 13107842 -104754785 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr9 13109720 13109758 -104752869 + AT_rich Low_complexity Low_complexity 1 38 0 3132 188 40 1 chr9 13110948 13111665 -104750962 + L1M2 LINE L1 4697 5443 -766 2284 109 3 0 chr9 13111665 13111967 -104750660 + AluSq SINE Alu 1 303 -10 3132 188 40 1 chr9 13111967 13111992 -104750635 + L1M2 LINE L1 5443 5466 -743 2621 111 6 0 chr9 13112095 13112456 -104750171 + THE1B LTR MaLR 2 364 0 10043 118 50 8 chr9 13112458 13113973 -104748654 + THE1B-int LTR MaLR 3 1580 0 2360 134 11 0 chr9 13113975 13114333 -104748294 + THE1B LTR MaLR 3 364 0 21 0 0 0 chr9 13114393 13114414 -104748213 + AT_rich Low_complexity Low_complexity 1 21 0 725 357 23 23 chr9 13114953 13115295 -104747332 + LTR16A LTR ERVL 72 413 -37 1253 284 99 24 chr9 13115351 13115855 -104746772 - MLT1F LTR MaLR 0 542 1 1352 270 157 18 chr9 13115878 13116382 -104746245 - MLT1E LTR MaLR -3 590 17 710 315 67 63 chr9 13116383 13116888 -104745739 + HERV16 LTR ERVL 74 580 -4416 193 290 0 32 chr9 13117318 13117380 -104745247 + MIR SINE MIR 85 144 -64 198 0 0 0 chr9 13118480 13118502 -104744125 + (TG)n Simple_repeat Simple_repeat 1 22 0 1426 183 26 95 chr9 13118506 13118895 -104743732 - MLT1B LTR MaLR -2 388 27 2290 118 0 6 chr9 13118902 13119216 -104743411 - AluSx SINE Alu 0 312 1 209 319 43 32 chr9 13121118 13121212 -104741415 - MIR SINE MIR -97 165 71 653 286 42 24 chr9 13122541 13122754 -104739873 + MIR SINE MIR 8 224 -38 482 104 0 0 chr9 13122816 13122883 -104739744 + Alu SINE Alu 1 67 -251 1118 213 47 84 chr9 13122950 13123378 -104739249 - MER92A LTR ERV1 0 412 1 917 219 16 3 chr9 13123951 13124226 -104738401 + MER89 LTR ERV1 1 378 -181 2073 120 7 10 chr9 13124267 13124400 -104738227 + AluSc SINE Alu 1 133 -176 2019 109 0 72 chr9 13124400 13124731 -104737896 + AluSg SINE Alu 1 307 -3 2073 120 7 10 chr9 13124731 13124906 -104737721 + AluSc SINE Alu 133 308 -1 2298 196 32 6 chr9 13124912 13125385 -104737242 - MER67D LTR ERV1 -33 478 1 870 196 0 50 chr9 13125385 13125499 -104737128 + MER89 LTR ERV1 369 470 -89 2369 128 6 6 chr9 13125499 13125842 -104736785 - MER61A LTR ERV1 0 343 1 870 196 0 50 chr9 13125842 13125926 -104736701 + MER89 LTR ERV1 470 557 -2 800 241 99 26 chr9 13126003 13126345 -104736282 - MSTD LTR MaLR -3 393 1 225 302 94 68 chr9 13126535 13126727 -104735900 - L2 LINE L2 -144 3169 2973 457 170 54 18 chr9 13126727 13126839 -104735788 + MER4C LTR ERV1 1 116 -349 1029 217 100 112 chr9 13126921 13127410 -104735217 + LTR34 LTR ERV1 137 695 -4 526 244 0 133 chr9 13127437 13127662 -104734965 - L2 LINE L2 -391 2923 2729 337 124 34 15 chr9 13127758 13127828 -104734799 - MER67D LTR ERV1 -392 122 64 241 194 15 15 chr9 13128163 13128230 -104734397 + T-rich Low_complexity Low_complexity 4 70 0 701 168 12 12 chr9 13128250 13128417 -104734210 + CT-rich Low_complexity Low_complexity 3 169 0 851 194 6 6 chr9 13128562 13128890 -104733737 + CT-rich Low_complexity Low_complexity 1 328 0 202 234 0 0 chr9 13132920 13132967 -104729660 + A-rich Low_complexity Low_complexity 1 47 0 357 313 69 6 chr9 13133226 13133386 -104729241 + MIR SINE MIR 49 218 -44 2152 129 0 0 chr9 13133808 13134119 -104728508 + AluSx SINE Alu 1 311 -1 219 296 184 0 chr9 13134738 13134836 -104727791 - L2 LINE L2 -16 3256 3141 188 330 87 50 chr9 13134981 13135199 -104727428 - L2 LINE L2 -231 3041 2816 26 0 0 0 chr9 13135481 13135507 -104727120 + AT_rich Low_complexity Low_complexity 1 26 0 1728 169 14 0 chr9 13136028 13136306 -104726321 + AluJo SINE Alu 5 286 -26 218 161 32 32 chr9 13136314 13136376 -104726251 + A-rich Low_complexity Low_complexity 5 66 0 1804 112 0 0 chr9 13136964 13137215 -104725412 - AluSc SINE Alu -21 288 38 25 31 0 0 chr9 13137521 13137553 -104725074 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr9 13137782 13137803 -104724824 + AT_rich Low_complexity Low_complexity 1 21 0 351 292 58 18 chr9 13137921 13138092 -104724535 + L1ME LINE L1 5482 5659 -462 1284 212 48 10 chr9 13138220 13138531 -104724096 - MER33 DNA MER1_type 0 324 2 198 302 47 23 chr9 13138833 13138919 -104723708 + MIR SINE MIR 54 141 -67 2124 122 19 50 chr9 13139260 13139636 -104722991 + THE1B LTR MaLR 1 364 0 11184 101 19 0 chr9 13139636 13141186 -104721441 + THE1B-int LTR MaLR 1 1580 0 2044 114 62 31 chr9 13141187 13141539 -104721088 + THE1B LTR MaLR 2 364 0 482 272 99 47 chr9 13141568 13141601 -104721026 + MIR SINE MIR 33 63 -199 1511 175 50 68 chr9 13141601 13141983 -104720644 + THE1C LTR MaLR 1 375 0 482 272 99 47 chr9 13141983 13142162 -104720465 + MIR SINE MIR 63 256 -6 181 196 59 59 chr9 13142222 13142273 -104720354 + MIR SINE MIR 207 257 -5 9483 25 0 0 chr9 13142345 13144243 -104718384 - L1PA2 LINE L1 -1 6154 4257 27 36 0 36 chr9 13144926 13144944 -104717683 + AT_rich Low_complexity Low_complexity 1 18 -36 2237 75 4 0 chr9 13144944 13145270 -104717357 + AluY SINE Alu 2 328 0 27 36 0 36 chr9 13145270 13145306 -104717321 + AT_rich Low_complexity Low_complexity 18 54 0 228 306 41 16 chr9 13145914 13146035 -104716592 + L1ME LINE L1 5518 5641 -480 203 217 0 29 chr9 13147934 13148003 -104714624 + (TA)n Simple_repeat Simple_repeat 2 68 0 8223 186 21 12 chr9 13148135 13150074 -104712553 + L1MC1 LINE L1 6 2053 -4373 760 242 27 31 chr9 13150092 13150385 -104712242 + L1M4 LINE L1 4310 4601 -1545 297 250 110 0 chr9 13150380 13150516 -104712111 + L1M4 LINE L1 3794 3944 -2202 * 761 168 22 119 chr9 13150513 13150739 -104711888 + L1MA6 LINE L1 6093 6296 -4 1094 245 112 40 chr9 13150824 13151114 -104711513 + L1M4 LINE L1 4699 5038 -1108 2173 104 0 0 chr9 13151114 13151402 -104711225 + AluSg SINE Alu 13 300 -10 1094 245 112 40 chr9 13151402 13151585 -104711042 + L1M4 LINE L1 5038 5206 -940 * 3622 231 54 3 chr9 13151582 13152920 -104709707 + L1MC1 LINE L1 2100 3507 -2919 2768 143 47 0 chr9 13152951 13153462 -104709165 + L1MA2 LINE L1 5769 6303 -1 262 236 63 24 chr9 13153507 13153634 -104708993 + L1ME4a LINE L1 5944 6075 -46 5619 189 22 38 chr9 13153637 13155314 -104707313 + L1MC1 LINE L1 4971 6607 -6 187 345 46 11 chr9 13155327 13155414 -104707213 - MIR SINE MIR -83 125 36 302 86 29 29 chr9 13156150 13156220 -104706407 + (TAGA)n Simple_repeat Simple_repeat 1 70 0 358 291 48 62 chr9 13156670 13156880 -104705747 - MIR SINE MIR -8 254 48 2120 141 34 8 chr9 13157153 13157508 -104705119 + THE1B LTR MaLR 1 364 0 180 335 39 95 chr9 13158229 13158408 -104704219 - L2 LINE L2 -207 3065 2897 231 225 28 0 chr9 13158648 13158719 -104703908 + (CA)n Simple_repeat Simple_repeat 2 74 0 187 366 123 25 chr9 13159016 13159300 -104703327 - L2 LINE L2 -670 2644 2333 32 57 0 0 chr9 13159322 13159375 -104703252 + AT_rich Low_complexity Low_complexity 1 53 0 321 89 0 0 chr9 13159873 13159918 -104702709 + (T)n Simple_repeat Simple_repeat 1 45 0 207 0 0 0 chr9 13160151 13160174 -104702453 + (T)n Simple_repeat Simple_repeat 1 23 0 240 86 0 0 chr9 13160961 13160996 -104701631 + (TG)n Simple_repeat Simple_repeat 2 36 0 1997 244 99 38 chr9 13161999 13162758 -104699869 - L1ME1 LINE L1 -5 6161 5357 489 301 100 26 chr9 13162848 13163349 -104699278 + L1M4 LINE L1 3044 3581 -2565 1443 228 43 73 chr9 13163354 13163820 -104698807 + L1ME1 LINE L1 5672 6123 -43 236 261 15 0 chr9 13164028 13164093 -104698534 + L1MEd LINE L1 973 1038 -5081 413 307 42 32 chr9 13164137 13164395 -104698232 + L1MEd LINE L1 1098 1403 -4786 327 292 75 32 chr9 13164747 13165093 -104697534 + L1MEd LINE L1 2114 2474 -3655 26 74 0 0 chr9 13165417 13165471 -104697156 + AT_rich Low_complexity Low_complexity 1 54 0 219 250 0 0 chr9 13165822 13165870 -104696757 + (TATATG)n Simple_repeat Simple_repeat 3 50 0 262 253 36 0 chr9 13165871 13165954 -104696673 + L1MC4 LINE L1 6614 6699 -1343 1089 139 18 72 chr9 13166538 13166761 -104695866 - L1PA16 LINE L1 0 6166 5956 202 182 0 0 chr9 13167131 13167164 -104695463 + (TGG)n Simple_repeat Simple_repeat 3 35 0 2045 132 0 13 chr9 13168248 13168551 -104694076 - AluSx SINE Alu -13 299 1 25 0 0 0 chr9 13169077 13169102 -104693525 + AT_rich Low_complexity Low_complexity 1 25 0 28 48 0 0 chr9 13170576 13170618 -104692009 + AT_rich Low_complexity Low_complexity 1 42 0 2233 118 67 76 chr9 13170803 13170991 -104691636 + MSTA LTR MaLR 1 189 -239 18663 89 8 1 chr9 13170991 13174434 -104688193 + L1PA7 LINE L1 2695 6154 0 2233 118 67 76 chr9 13174434 13174677 -104687950 + MSTA LTR MaLR 189 428 0 2555 176 46 62 chr9 13177154 13177822 -104684805 + L1MA4 LINE L1 5632 6296 -4 647 259 131 34 chr9 13178149 13178385 -104684242 - MIR SINE MIR 0 262 4 1767 157 18 0 chr9 13180199 13180521 -104682106 - AluSg SINE Alu 0 327 1 1833 34 13 8 chr9 13181113 13181351 -104681276 + L1PA4 LINE L1 5917 6155 0 236 384 46 26 chr9 13181371 13181522 -104681105 + L2 LINE L2 2943 3096 -217 309 314 107 0 chr9 13182565 13182686 -104679941 + L2 LINE L2 3176 3309 -4 183 80 0 0 chr9 13183896 13183921 -104678706 + (TTTTC)n Simple_repeat Simple_repeat 5 29 0 228 247 0 22 chr9 13186104 13186193 -104676434 - L1MC4 LINE L1 -1339 6703 6617 812 301 67 33 chr9 13186349 13186768 -104675859 + L2 LINE L2 2877 3309 -4 354 267 70 76 chr9 13187638 13187810 -104674817 + MIR SINE MIR 73 243 -19 2021 238 11 6 chr9 13188546 13189089 -104673538 + L1M4 LINE L1 4734 5279 -867 9761 127 36 5 chr9 13189091 13190647 -104671980 + Tigger1 DNA MER2_type 814 2418 0 850 231 166 23 chr9 13192147 13192618 -104670009 - L1MDb LINE L1 -1224 5182 4645 913 298 65 6 chr9 13192745 13193123 -104669504 - L1MDb LINE L1 -1903 4503 4094 30 83 0 0 chr9 13193124 13193196 -104669431 + AT_rich Low_complexity Low_complexity 1 72 0 551 273 83 14 chr9 13193203 13193419 -104669208 - L1MDb LINE L1 -2305 4101 3871 1020 190 0 16 chr9 13193420 13193604 -104669023 - AluJb SINE Alu 0 312 132 213 225 0 0 chr9 13193604 13193644 -104668983 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 752 154 0 0 chr9 13193673 13193790 -104668837 - AluJb SINE Alu -193 119 3 1540 260 48 66 chr9 13193797 13194585 -104668042 - L1MDb LINE L1 -2531 3875 3105 1610 204 119 28 chr9 13194585 13195046 -104667581 + MLT1D LTR MaLR 1 503 -2 1540 260 48 66 chr9 13195046 13195183 -104667444 - L1MDb LINE L1 -3301 3105 2967 561 253 75 22 chr9 13195254 13195621 -104667006 - L1MDb LINE L1 -4815 1591 1202 297 135 0 0 chr9 13196344 13196396 -104666231 + (TG)n Simple_repeat Simple_repeat 1 52 0 522 158 16 24 chr9 13196397 13196524 -104666103 + GA-rich Low_complexity Low_complexity 1 126 0 280 323 61 67 chr9 13197358 13197655 -104664972 + LTR16C LTR ERVL 194 488 -3 848 157 0 8 chr9 13198645 13198779 -104663848 + AluSq/x SINE Alu 2 134 -179 1637 162 7 74 chr9 13198794 13199103 -104663524 + AluSx SINE Alu 3 290 -22 2362 138 42 45 chr9 13199183 13199363 -104663264 - MSTB LTR MaLR 0 426 247 2165 132 73 9 chr9 13199363 13199705 -104662922 - THE1B LTR MaLR 0 364 1 11750 94 1 7 chr9 13199705 13201294 -104661333 - THE1B-int LTR MaLR 0 1580 1 1973 163 80 0 chr9 13201294 13201631 -104660996 - THE1B LTR MaLR 0 364 1 2362 138 42 45 chr9 13201631 13201875 -104660752 - MSTB LTR MaLR -176 250 1 582 304 49 66 chr9 13202056 13202299 -104660328 + MIR SINE MIR 5 243 -19 26 88 0 0 chr9 13202437 13202505 -104660122 + AT_rich Low_complexity Low_complexity 1 68 0 29 47 0 0 chr9 13203642 13203685 -104658942 + AT_rich Low_complexity Low_complexity 1 43 0 2102 118 0 19 chr9 13204037 13204350 -104658277 + AluSg SINE Alu 1 307 -3 233 232 0 0 chr9 13205025 13205081 -104657546 + T-rich Low_complexity Low_complexity 1 56 0 1704 233 15 25 chr9 13206020 13206423 -104656204 - MER47B DNA MER2_type 0 418 20 431 320 45 6 chr9 13206868 13207075 -104655552 + MIR SINE MIR 15 228 -34 381 279 155 40 chr9 13207836 13208062 -104654565 - MLT1J LTR MaLR -154 357 106 6103 74 1 4 chr9 13208213 13209012 -104653615 - L1PA6 LINE L1 0 6154 5358 225 0 0 0 chr9 13210085 13210110 -104652517 + (CA)n Simple_repeat Simple_repeat 1 25 0 317 244 0 24 chr9 13212334 13212416 -104650211 - MLT1H LTR MaLR -364 185 106 2325 99 3 6 chr9 13212460 13212772 -104649855 - AluSx SINE Alu -1 311 1 1149 256 76 51 chr9 13214209 13214697 -104647930 + LTR53 LTR ERVL 20 519 0 29 28 0 0 chr9 13216730 13216766 -104645861 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr9 13217006 13217027 -104645600 + AT_rich Low_complexity Low_complexity 1 21 0 21 82 0 0 chr9 13217145 13217194 -104645433 + AT_rich Low_complexity Low_complexity 1 49 0 231 186 57 29 chr9 13217194 13217264 -104645363 + L1ME4a LINE L1 5337 5408 -713 326 269 22 15 chr9 13217318 13217452 -104645175 + GA-rich Low_complexity Low_complexity 2 136 0 440 316 119 26 chr9 13217470 13217888 -104644739 + L1ME4a LINE L1 5498 5967 -154 1468 207 39 33 chr9 13217901 13218264 -104644363 - MLT1A1 LTR MaLR 0 365 1 282 56 0 0 chr9 13218712 13218748 -104643879 + (TA)n Simple_repeat Simple_repeat 1 36 0 2148 89 17 10 chr9 13218749 13219042 -104643585 - AluSx SINE Alu -17 295 1 22 0 0 0 chr9 13219190 13219212 -104643415 + AT_rich Low_complexity Low_complexity 1 22 0 756 287 101 49 chr9 13219955 13220283 -104642344 - MLT1J LTR MaLR -57 454 110 1522 225 108 32 chr9 13220847 13221345 -104641282 - LTR55 LTR ERV -7 541 6 4706 144 30 25 chr9 13221380 13222227 -104640400 - MER49 LTR ERV1 -24 899 49 274 83 92 174 chr9 13222216 13222325 -104640302 - MER49 LTR ERV1 -823 100 1 * 372 163 0 0 chr9 13222334 13222420 -104640207 + T-rich Low_complexity Low_complexity 1 86 0 10217 14 0 0 chr9 13222420 13224383 -104638244 - L1HS LINE L1 0 6155 4193 6484 24 0 0 chr9 13224381 13225139 -104637488 + L1HS LINE L1 3439 4196 -1950 * 21 0 0 0 chr9 13226042 13226063 -104636564 + AT_rich Low_complexity Low_complexity 1 21 0 275 311 48 0 chr9 13226816 13226919 -104635708 + L2 LINE L2 3148 3255 -17 180 246 15 46 chr9 13228023 13228088 -104634539 - L2 LINE L2 -37 3235 3173 182 344 47 23 chr9 13228235 13228363 -104634264 - L2 LINE L2 -340 2974 2844 480 297 150 38 chr9 13230091 13230384 -104632243 + MLT1J2 LTR MaLR 5 330 -120 475 314 69 25 chr9 13232383 13232587 -104630040 + L2 LINE L2 2424 2636 -678 1364 225 28 3 chr9 13232589 13232874 -104629753 - ERVL-B1 LTR ERVL -5244 520 229 487 254 29 14 chr9 13232914 13233052 -104629575 - ERVL-B1 LTR ERVL -5623 141 2 2146 208 83 29 chr9 13233057 13233539 -104629088 - MLT2B1 LTR ERVL -8 512 5 845 312 112 31 chr9 13233547 13234002 -104628625 + L2 LINE L2 2805 3296 -17 378 42 0 0 chr9 13234004 13234052 -104628575 + (GGAA)n Simple_repeat Simple_repeat 1 48 0 2015 106 11 3 chr9 13234763 13235046 -104627581 - AluSq SINE Alu -15 298 14 287 278 178 30 chr9 13235217 13235386 -104627241 - MIR SINE MIR -58 204 11 186 143 0 0 chr9 13236066 13236101 -104626526 + (CCA)n Simple_repeat Simple_repeat 2 36 0 2013 160 27 11 chr9 13236455 13236824 -104625803 - THE1C LTR MaLR 0 375 1 437 130 0 0 chr9 13237149 13237218 -104625409 - L1PA13 LINE L1 -3 6160 6092 25 31 0 0 chr9 13237825 13237857 -104624770 + AT_rich Low_complexity Low_complexity 1 32 0 180 365 0 0 chr9 13238535 13238598 -104624029 - L2 LINE L2 0 3313 3251 245 393 21 38 chr9 13238727 13238913 -104623714 - L2 LINE L2 -246 3026 2844 23 0 0 0 chr9 13239096 13239119 -104623508 + AT_rich Low_complexity Low_complexity 1 23 0 369 0 0 0 chr9 13239167 13239208 -104623419 + (CA)n Simple_repeat Simple_repeat 2 42 0 456 335 71 22 chr9 13239739 13239963 -104622664 - MIR SINE MIR -15 247 13 268 241 121 91 chr9 13241464 13241696 -104620931 + L1MC4 LINE L1 6755 6993 -1049 186 174 0 0 chr9 13241907 13241953 -104620674 + (TA)n Simple_repeat Simple_repeat 2 47 0 2652 140 33 11 chr9 13242094 13242551 -104620076 - MLT1C LTR MaLR 0 467 1 220 349 93 35 chr9 13244215 13244387 -104618240 - MER5A DNA MER1_type -7 182 1 4878 200 43 17 chr9 13244545 13246472 -104616155 - L1MA10 LINE L1 -4 6330 4344 26 0 0 0 chr9 13249160 13249186 -104613441 + AT_rich Low_complexity Low_complexity 1 26 0 236 378 28 0 chr9 13251116 13251259 -104611368 + MIR SINE MIR 102 248 -14 207 211 19 19 chr9 13252420 13252472 -104610155 + CT-rich Low_complexity Low_complexity 2 53 0 727 217 12 24 chr9 13252959 13253125 -104609502 - FRAM SINE Alu -2 164 1 387 273 31 70 chr9 13253159 13253235 -104609392 - MLT1K LTR MaLR 0 588 511 2324 55 0 3 chr9 13253235 13253527 -104609100 + AluY SINE Alu 1 291 -20 531 0 0 0 chr9 13253527 13253586 -104609041 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 387 273 31 70 chr9 13253586 13253735 -104608892 - MLT1K LTR MaLR -75 513 371 1748 187 0 0 chr9 13253846 13254140 -104608487 - AluJo SINE Alu -16 296 3 242 28 0 28 chr9 13254677 13254713 -104607914 + (TTG)n Simple_repeat Simple_repeat 2 36 0 473 270 38 13 chr9 13254771 13254930 -104607697 - MER104 DNA Tc2 -9 171 9 478 327 57 16 chr9 13254961 13255209 -104607418 + MIR SINE MIR 5 262 0 788 236 97 0 chr9 13255878 13256073 -104606554 + MER20 DNA MER1_type 1 214 -5 881 148 112 133 chr9 13257119 13257457 -104605170 - MER33 DNA MER1_type 0 324 1 393 329 51 7 chr9 13257899 13258036 -104604591 - MIR SINE MIR -114 148 6 507 107 0 0 chr9 13260525 13260600 -104602027 + (TA)n Simple_repeat Simple_repeat 2 76 0 2017 218 54 30 chr9 13260615 13261056 -104601571 - MLT2B1 LTR ERVL -68 452 1 1027 234 12 81 chr9 13261195 13261541 -104601086 - MLT1H LTR MaLR -169 380 59 192 347 40 0 chr9 13261592 13261667 -104600960 + MIR SINE MIR 51 128 -80 706 191 48 64 chr9 13261967 13262155 -104600472 - MER5A DNA MER1_type -1 188 4 580 318 87 12 chr9 13262208 13262460 -104600167 - MLT1I LTR MaLR -134 275 5 377 390 110 24 chr9 13262546 13263082 -104599545 - L2 LINE L2 -880 2434 1853 195 42 0 0 chr9 13263414 13263438 -104599189 + (CA)n Simple_repeat Simple_repeat 2 25 0 279 203 22 138 chr9 13263545 13263683 -104598944 - MLT1H LTR MaLR -3 546 425 769 265 45 30 chr9 13263944 13264144 -104598483 - MER63A DNA MER1_type -2 208 6 239 196 54 120 chr9 13264237 13264329 -104598298 - L2 LINE L2 0 3272 3187 273 128 0 0 chr9 13264379 13264426 -104598201 + (CA)n Simple_repeat Simple_repeat 2 48 0 202 388 29 29 chr9 13266198 13266368 -104596259 + L3 LINE CR1 1407 1576 -1 320 365 72 38 chr9 13266564 13266827 -104595800 + L3 LINE CR1 557 828 -749 254 226 0 16 chr9 13266830 13266892 -104595735 + L1ME2 LINE L1 6004 6064 -100 597 344 82 22 chr9 13267272 13267638 -104594989 + L3 LINE CR1 837 1224 -353 44 20 0 0 chr9 13267752 13267803 -104594824 + AT_rich Low_complexity Low_complexity 1 51 0 186 167 0 0 chr9 13267861 13267897 -104594730 + (CA)n Simple_repeat Simple_repeat 1 36 0 953 256 73 38 chr9 13268743 13269192 -104593435 + Charlie4a DNA MER1_type 3 467 -41 218 57 57 0 chr9 13269295 13269330 -104593297 + T-rich Low_complexity Low_complexity 4 40 0 184 225 141 14 chr9 13269567 13269638 -104592989 + L2 LINE L2 137 216 -3098 459 252 9 9 chr9 13270323 13270434 -104592193 + MIR SINE MIR 31 141 -121 418 344 7 26 chr9 13270628 13270782 -104591845 - MIR3 SINE MIR -19 189 39 190 358 63 0 chr9 13271314 13271409 -104591218 + L2 LINE L2 3193 3293 -20 250 340 119 16 chr9 13271552 13271746 -104590881 + L2 LINE L2 2812 3025 -247 251 326 44 44 chr9 13272179 13272314 -104590313 - L2 LINE L2 -1 3271 3137 864 305 0 5 chr9 13272406 13272629 -104589998 + MIR SINE MIR 8 229 -33 22 70 0 0 chr9 13272716 13272759 -104589868 + AT_rich Low_complexity Low_complexity 1 43 0 1087 86 0 7 chr9 13272762 13272913 -104589714 - L1PA10 LINE L1 -11 6157 6008 1188 278 54 84 chr9 13273089 13273661 -104588966 - MLT1H1 LTR MaLR 0 555 1 353 352 98 34 chr9 13273759 13274023 -104588604 + L2 LINE L2 2950 3230 -42 21 0 0 0 chr9 13274184 13274205 -104588422 + AT_rich Low_complexity Low_complexity 1 21 0 502 278 181 0 chr9 13274664 13274869 -104587758 - MIR SINE MIR -10 252 11 212 235 12 74 chr9 13274994 13275075 -104587552 - L2 LINE L2 -905 2409 2334 375 229 57 8 chr9 13275504 13275626 -104587001 + LTR16A1 LTR ERVL 330 457 0 212 398 27 32 chr9 13276537 13276758 -104585869 + L2 LINE L2 2684 2903 -411 184 327 159 19 chr9 13278714 13278821 -104583806 - L2 LINE L2 0 3272 3151 756 241 93 0 chr9 13278959 13279175 -104583452 + MER69 DNA AcHobo 2291 2526 0 2289 81 0 0 chr9 13279493 13279789 -104582838 + AluY SINE Alu 1 296 -15 657 322 48 9 chr9 13280495 13280725 -104581902 + MIR SINE MIR 10 248 -14 217 128 43 0 chr9 13281450 13281497 -104581130 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 253 187 93 40 chr9 13282942 13283017 -104579610 - MIR SINE MIR 0 262 184 28 0 0 0 chr9 13283103 13283131 -104579496 + AT_rich Low_complexity Low_complexity 1 28 0 213 238 16 66 chr9 13283356 13283478 -104579149 + A-rich Low_complexity Low_complexity 4 119 0 23 78 0 0 chr9 13283570 13283621 -104579006 + AT_rich Low_complexity Low_complexity 1 51 0 326 319 55 55 chr9 13284000 13284361 -104578266 + L1M4 LINE L1 2690 3050 -3096 2787 239 22 8 chr9 13284422 13285065 -104577562 + MER82 DNA MER2_type 2 653 0 1523 222 29 18 chr9 13285311 13285654 -104576973 + MLT1A1 LTR MaLR 7 353 -12 22 0 0 0 chr9 13285822 13285844 -104576783 + AT_rich Low_complexity Low_complexity 1 22 0 303 143 16 16 chr9 13288320 13288383 -104574244 - MLT1H LTR MaLR -446 103 41 1972 124 0 0 chr9 13289566 13289839 -104572788 + AluSx SINE Alu 1 273 -39 207 0 0 0 chr9 13291130 13291153 -104571474 + (TTAA)n Simple_repeat Simple_repeat 3 25 0 236 235 0 86 chr9 13291182 13291263 -104571364 + MLT1L LTR MaLR 137 221 -367 299 213 0 0 chr9 13291314 13291361 -104571266 + MER5A DNA MER1_type 50 96 -93 2336 152 8 0 chr9 13291361 13291729 -104570898 + MLT2D LTR ERVL 1 371 -43 510 162 10 50 chr9 13291809 13291908 -104570719 + MER5A DNA MER1_type 94 188 -1 1328 277 137 31 chr9 13291985 13292569 -104570058 + MLT2F LTR ERVL 18 663 0 1537 155 0 12 chr9 13293240 13293498 -104569129 - AluJb SINE Alu -57 255 1 189 214 31 10 chr9 13293857 13293955 -104568672 + (CTATA)n Simple_repeat Simple_repeat 4 103 0 306 0 0 0 chr9 13294449 13294483 -104568144 + (CA)n Simple_repeat Simple_repeat 1 34 0 1703 165 0 32 chr9 13295849 13296158 -104566469 + AluJb SINE Alu 1 299 -13 358 110 0 122 chr9 13296883 13296965 -104565662 + L1MA10 LINE L1 6253 6324 -10 264 185 0 0 chr9 13297349 13297403 -104565224 + (CA)n Simple_repeat Simple_repeat 2 55 0 228 370 0 0 chr9 13297504 13297577 -104565050 - L2 LINE L2 -234 3038 2966 288 0 0 0 chr9 13298426 13298458 -104564169 + (TG)n Simple_repeat Simple_repeat 2 33 0 1989 89 48 7 chr9 13298463 13298734 -104563893 - AluSx SINE Alu -15 297 16 240 366 0 0 chr9 13299004 13299086 -104563541 - L2 LINE L2 0 3313 3232 328 256 47 116 chr9 13299964 13300222 -104562405 - L2 LINE L2 0 3313 3074 203 250 39 0 chr9 13300378 13300430 -104562197 + L2 LINE L2 3219 3272 0 297 0 0 0 chr9 13300779 13300812 -104561815 + (TG)n Simple_repeat Simple_repeat 2 34 0 188 289 100 56 chr9 13301112 13301202 -104561425 + MIR3 SINE MIR 6 99 -109 1141 305 72 54 chr9 13301300 13301691 -104560936 + L2 LINE L2 2346 2728 -585 1727 180 3 7 chr9 13301691 13301991 -104560636 + AluJo SINE Alu 10 308 -4 381 22 0 0 chr9 13301992 13302038 -104560589 + (CA)n Simple_repeat Simple_repeat 1 46 0 1141 305 72 54 chr9 13302038 13302586 -104560041 + L2 LINE L2 2727 3313 0 282 417 22 7 chr9 13302698 13302837 -104559790 + L2 LINE L2 3127 3267 -5 315 85 0 0 chr9 13305149 13305196 -104557431 + (TC)n Simple_repeat Simple_repeat 1 47 0 24 32 0 0 chr9 13306067 13306098 -104556529 + AT_rich Low_complexity Low_complexity 1 31 0 225 0 0 0 chr9 13307600 13307625 -104555002 + (TG)n Simple_repeat Simple_repeat 2 26 0 363 60 0 0 chr9 13308017 13308067 -104554560 + (TG)n Simple_repeat Simple_repeat 1 50 0 26 30 0 0 chr9 13308532 13308565 -104554062 + AT_rich Low_complexity Low_complexity 1 33 0 1111 259 132 15 chr9 13308620 13309218 -104553409 - Charlie7 DNA MER1_type -316 2296 1629 446 281 79 55 chr9 13309306 13309598 -104553029 - Charlie7 DNA MER1_type -2277 335 37 368 20 0 20 chr9 13310036 13310086 -104552541 + (TAAAA)n Simple_repeat Simple_repeat 2 50 0 22 35 0 0 chr9 13310374 13310403 -104552224 + AT_rich Low_complexity Low_complexity 1 29 0 2093 99 0 0 chr9 13312174 13312447 -104550180 + AluSq SINE Alu 41 313 0 577 264 99 20 chr9 13312511 13312712 -104549915 - LTR33 LTR ERVL 0 521 305 370 220 136 51 chr9 13312819 13312847 -104549780 - LTR33 LTR ERVL -380 141 117 1890 184 19 21 chr9 13312847 13313223 -104549404 - THE1C LTR MaLR 0 375 1 370 220 136 51 chr9 13313223 13313312 -104549315 - LTR33 LTR ERVL -404 117 14 208 65 87 0 chr9 13313408 13313454 -104549173 + (TA)n Simple_repeat Simple_repeat 1 50 0 23 0 0 0 chr9 13313530 13313553 -104549074 + AT_rich Low_complexity Low_complexity 1 23 0 262 353 10 0 chr9 13314160 13314262 -104548365 + MIR3 SINE MIR 97 199 -9 338 363 52 44 chr9 13315674 13315922 -104546705 + L1MEd LINE L1 964 1213 -4906 272 328 95 21 chr9 13316015 13316256 -104546371 + HAL1 LINE L1 1403 1661 -846 1309 161 158 61 chr9 13317183 13317544 -104545083 + MSTD LTR MaLR 1 396 0 27 0 0 0 chr9 13318178 13318205 -104544422 + AT_rich Low_complexity Low_complexity 1 27 0 2902 257 70 56 chr9 13318207 13319699 -104542928 - L1MC4 LINE L1 0 8042 6531 407 321 87 5 chr9 13319769 13319953 -104542674 + MIR SINE MIR 59 257 -5 280 288 0 0 chr9 13320911 13320991 -104541636 + T-rich Low_complexity Low_complexity 1 80 0 192 321 0 0 chr9 13321003 13321056 -104541571 - L2 LINE L2 -4 3309 3257 571 327 122 41 chr9 13321155 13321785 -104540842 - L2 LINE L2 -110 3203 2439 1876 101 7 64 chr9 13322483 13322781 -104539846 - MER52A-int LTR ERV1 -5113 1978 1698 3062 160 76 0 chr9 13322898 13323333 -104539294 - MER52A-int LTR ERV1 -6520 571 88 195 42 0 0 chr9 13323333 13323357 -104539270 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 3062 160 76 0 chr9 13323357 13323445 -104539182 - MER52A-int LTR ERV1 -7003 88 8 1571 196 24 0 chr9 13323452 13323743 -104538884 - MER52A LTR ERV1 0 1755 1458 4262 205 79 20 chr9 13323764 13324750 -104537877 - MER52A LTR ERV1 -711 1044 1 360 188 62 0 chr9 13324776 13324840 -104537787 - L1M1 LINE L1 -5856 1709 1642 * 14015 172 33 15 chr9 13324793 13330762 -104531865 + L1MA2 LINE L1 1640 7724 0 2078 110 10 10 chr9 13330975 13331141 -104531486 - AluSx SINE Alu -11 301 133 348 24 0 0 chr9 13331141 13331182 -104531445 + (TTA)n Simple_repeat Simple_repeat 2 42 0 2078 110 10 10 chr9 13331182 13331314 -104531313 - AluSx SINE Alu -178 134 3 642 206 18 30 chr9 13331344 13331509 -104531118 + L1ME3 LINE L1 5999 6161 -1 717 238 20 15 chr9 13331773 13331986 -104530641 + Ricksha DNA DNA 2 291 -963 * 8265 150 43 17 chr9 13331979 13332532 -104530095 + Ricksha DNA DNA 1690 2227 -1019 4109 93 0 4 chr9 13332532 13333088 -104529539 - MER41A LTR ERV1 0 554 1 8265 150 43 17 chr9 13333088 13334043 -104528584 + Ricksha DNA DNA 2227 3237 -9 23 78 0 0 chr9 13334397 13334448 -104528179 + AT_rich Low_complexity Low_complexity 1 51 0 24 0 0 0 chr9 13335982 13336006 -104526621 + AT_rich Low_complexity Low_complexity 1 24 0 381 342 8 0 chr9 13337563 13337680 -104524947 - L2 LINE L2 -1 3271 3154 276 315 74 9 chr9 13338021 13338129 -104524498 - L2 LINE L2 -4 3268 3154 462 297 78 45 chr9 13338863 13339390 -104523237 - L1M4 LINE L1 -1984 4398 3854 1717 187 20 0 chr9 13340187 13340534 -104522093 - L1MA4A LINE L1 -7 6296 5943 276 285 65 41 chr9 13340947 13341070 -104521557 + MIR3 SINE MIR 74 199 -9 435 227 97 32 chr9 13341174 13341328 -104521299 + MIR SINE MIR 97 260 -2 514 360 102 21 chr9 13341637 13342253 -104520374 + L3 LINE CR1 502 1167 -410 342 0 0 0 chr9 13342271 13342309 -104520318 + (TG)n Simple_repeat Simple_repeat 2 39 0 23 33 0 0 chr9 13342831 13342861 -104519766 + AT_rich Low_complexity Low_complexity 1 30 0 520 284 137 55 chr9 13342861 13343090 -104519537 - L2 LINE L2 -31 3282 3073 1943 122 0 14 chr9 13343090 13343468 -104519159 + AluSx SINE Alu 1 374 0 520 284 137 55 chr9 13343468 13343778 -104518849 - L2 LINE L2 -240 3073 2689 1396 205 81 9 chr9 13344756 13345088 -104517539 + MER65C LTR ERV1 106 461 0 345 125 0 0 chr9 13345460 13345516 -104517111 + (TG)n Simple_repeat Simple_repeat 1 56 0 320 227 76 68 chr9 13345524 13345656 -104516971 + L2 LINE L2 3169 3301 -12 182 323 81 10 chr9 13345777 13345876 -104516751 + L2 LINE L2 3158 3263 -9 546 186 141 0 chr9 13346725 13346881 -104515746 + MER53 DNA DNA 12 189 0 2558 182 30 9 chr9 13346992 13347004 -104515623 - L1MA4A LINE L1 -407 5776 5766 1707 174 3 9 chr9 13347004 13347338 -104515289 - L1MB3 LINE L1 -4 6179 5848 2558 182 30 9 chr9 13347338 13347884 -104514743 - L1MA4A LINE L1 -417 5766 5208 1926 221 33 14 chr9 13347868 13348438 -104514189 - L1MA4A LINE L1 -2471 3675 3095 * 277 312 9 9 chr9 13348455 13348564 -104514063 - L1M4 LINE L1 -3631 2751 2643 533 231 62 5 chr9 13348573 13348676 -104513951 - L1M4 LINE L1 -3639 2743 2647 485 58 14 0 chr9 13348676 13348745 -104513882 + (TA)n Simple_repeat Simple_repeat 1 70 0 533 231 62 5 chr9 13348745 13348836 -104513791 - L1M4 LINE L1 -3735 2647 2538 * 6883 185 79 10 chr9 13348830 13349618 -104513009 - L1M4 LINE L1 -4850 1534 802 1602 192 3 7 chr9 13349618 13349640 -104512987 - AluJb SINE Alu -6 306 285 532 24 73 0 chr9 13349640 13349722 -104512905 + (GTTTG)n Simple_repeat Simple_repeat 2 89 0 1602 192 3 7 chr9 13349722 13350006 -104512621 - AluJb SINE Alu -27 285 1 6883 185 79 10 chr9 13350006 13350630 -104511997 - L1M4 LINE L1 -5582 802 24 257 329 60 27 chr9 13350961 13351110 -104511517 - MLT1I LTR MaLR -255 154 1 295 350 52 36 chr9 13351160 13351354 -104511273 - L3 LINE CR1 -47 1530 1334 1945 156 0 0 chr9 13352162 13352445 -104510182 + AluSx SINE Alu 3 285 -27 217 355 47 9 chr9 13352752 13352859 -104509768 + MIR3 SINE MIR 12 122 -86 234 146 24 0 chr9 13352863 13352904 -104509723 + MIR SINE MIR 148 189 -73 21 36 0 0 chr9 13353171 13353199 -104509428 + AT_rich Low_complexity Low_complexity 1 28 0 198 0 0 0 chr9 13354242 13354264 -104508363 + (TC)n Simple_repeat Simple_repeat 1 22 0 369 0 0 0 chr9 13354268 13354309 -104508318 + (TG)n Simple_repeat Simple_repeat 2 42 0 228 86 0 0 chr9 13355031 13355066 -104507561 + (TC)n Simple_repeat Simple_repeat 2 36 0 520 111 12 0 chr9 13356087 13356168 -104506459 + AluJ/FRAM SINE Alu 216 297 -15 28 0 0 0 chr9 13356207 13356235 -104506392 + AT_rich Low_complexity Low_complexity 1 28 0 6862 138 27 6 chr9 13356447 13358596 -104504031 - L1MA1 LINE L1 -4 6298 4104 488 296 0 0 chr9 13359925 13360040 -104502587 - MIR3 SINE MIR -5 203 89 249 271 0 0 chr9 13360088 13360136 -104502491 - L2 LINE L2 -15 3257 3210 433 307 80 18 chr9 13360452 13360615 -104502012 - MIR SINE MIR -6 256 84 510 217 0 0 chr9 13361906 13362012 -104500615 + L1MA9 LINE L1 6171 6276 -36 215 348 11 11 chr9 13365595 13365687 -104496940 - MIR SINE MIR -3 259 168 272 343 0 10 chr9 13366488 13366590 -104496037 - Charlie7 DNA MER1_type -2511 101 1 207 262 16 16 chr9 13366863 13366924 -104495703 - L2 LINE L2 -11 3261 3201 352 328 9 0 chr9 13368471 13368587 -104494040 - MIR SINE MIR -121 141 25 318 106 0 0 chr9 13369373 13369420 -104493207 + (TG)n Simple_repeat Simple_repeat 2 48 0 1712 137 0 0 chr9 13371074 13371322 -104491305 + AluSx SINE Alu 21 268 -44 345 319 53 43 chr9 13372792 13372980 -104489647 - L2 LINE L2 -32 3281 3092 244 202 138 46 chr9 13373020 13373129 -104489498 - L2 LINE L2 -411 2903 2785 21 36 0 0 chr9 13373436 13373464 -104489163 + AT_rich Low_complexity Low_complexity 1 28 0 404 323 83 10 chr9 13373788 13373980 -104488647 - MIR SINE MIR -11 251 46 369 316 29 46 chr9 13374126 13374300 -104488327 + MIR SINE MIR 2 172 -90 22 56 0 0 chr9 13375718 13375754 -104486873 + AT_rich Low_complexity Low_complexity 1 36 0 235 329 37 0 chr9 13376108 13376190 -104486437 - L2 LINE L2 -2 3311 3227 338 354 14 51 chr9 13376204 13376419 -104486208 - L2 LINE L2 -236 3036 2830 31 58 0 0 chr9 13376696 13376748 -104485879 + AT_rich Low_complexity Low_complexity 1 52 0 3921 246 47 20 chr9 13376760 13378185 -104484442 + L1M4c LINE L1 2251 3720 -2662 343 309 111 51 chr9 13378567 13378956 -104483671 + L3 LINE CR1 708 1119 -458 1496 268 23 0 chr9 13378956 13379351 -104483276 - L1 LINE L1 -3553 2593 2190 536 164 8 67 chr9 13379333 13379363 -104483264 - L1 LINE L1 -2701 3445 3415 * 1751 153 60 44 chr9 13379363 13379729 -104482898 - THE1C LTR MaLR 0 375 4 536 164 8 67 chr9 13379729 13379832 -104482795 - L1 LINE L1 -2731 3415 3320 290 360 18 9 chr9 13380156 13380267 -104482360 - MIR3 SINE MIR -23 185 74 183 392 69 10 chr9 13380816 13380918 -104481709 + L2 LINE L2 3156 3263 -9 479 246 96 48 chr9 13381688 13382042 -104480585 + HAL1 LINE L1 2010 2380 -127 25 0 0 0 chr9 13382120 13382145 -104480482 + AT_rich Low_complexity Low_complexity 1 25 0 1053 210 48 65 chr9 13383062 13383414 -104479213 - L1MC4 LINE L1 -3 8039 7694 438 348 57 13 chr9 13383597 13383824 -104478803 + MIR SINE MIR 26 262 0 207 0 0 0 chr9 13386498 13386521 -104476106 + (A)n Simple_repeat Simple_repeat 1 23 0 1508 216 57 67 chr9 13386872 13387382 -104475245 - MLT1D LTR MaLR 0 505 1 580 354 66 8 chr9 13387838 13388202 -104474425 + L2 LINE L2 2098 2482 -832 26 64 0 0 chr9 13389433 13389480 -104473147 + AT_rich Low_complexity Low_complexity 1 47 0 257 218 106 13 chr9 13389741 13389835 -104472792 + AluY SINE Alu 132 201 -100 329 62 21 0 chr9 13390331 13390379 -104472248 + (TG)n Simple_repeat Simple_repeat 2 50 0 2329 39 42 0 chr9 13390796 13391081 -104471546 - AluY SINE Alu -14 297 1 191 214 125 0 chr9 13391126 13391182 -104471445 - MIR SINE MIR -101 161 99 5991 152 68 15 chr9 13391236 13392401 -104470226 + Tigger3b DNA MER2_type 2 1228 -3 721 149 0 0 chr9 13392574 13392688 -104469939 + FLAM_C SINE Alu 14 127 -16 332 238 267 0 chr9 13393650 13393755 -104468872 - MER102a DNA MER1_type -14 316 184 935 293 75 58 chr9 13393764 13394297 -104468330 - MER34 LTR ERV1 0 542 1 371 288 83 8 chr9 13394298 13394430 -104468197 - MER102a DNA MER1_type -153 177 36 2699 172 67 7 chr9 13394707 13395259 -104467368 + L1MA9 LINE L1 5728 6312 0 210 276 17 0 chr9 13395483 13395541 -104467086 - MIR SINE MIR 0 262 204 325 323 109 0 chr9 13395561 13395781 -104466846 - L1ME4a LINE L1 -165 5956 5713 227 338 82 36 chr9 13395781 13396062 -104466565 - MLT1L LTR MaLR -1 614 321 274 194 41 171 chr9 13396409 13396579 -104466048 - L1ME4a LINE L1 -443 5678 5531 24 32 0 0 chr9 13396802 13396833 -104465794 + AT_rich Low_complexity Low_complexity 1 31 0 2790 152 98 12 chr9 13396843 13397447 -104465180 + L1MC1 LINE L1 5197 5854 -479 855 229 5 21 chr9 13397468 13397660 -104464967 + 7SLRNA srpRNA srpRNA 111 299 -21 2556 178 13 4 chr9 13397663 13398141 -104464486 + L1MC1 LINE L1 5840 6321 -12 198 0 0 0 chr9 13398142 13398164 -104464463 + (TA)n Simple_repeat Simple_repeat 2 23 0 * 444 82 0 0 chr9 13398163 13398224 -104464403 + (TG)n Simple_repeat Simple_repeat 2 62 0 194 360 113 7 chr9 13398574 13398724 -104463903 + L2 LINE L2 2809 2974 -298 391 326 36 31 chr9 13398734 13398930 -104463697 + MIR SINE MIR 51 247 -15 204 382 56 7 chr9 13399341 13399485 -104463142 + L2 LINE L2 3161 3311 -2 1464 219 132 39 chr9 13399856 13400318 -104462309 + MLT1D LTR MaLR 1 505 0 22 0 0 0 chr9 13401758 13401780 -104460847 + AT_rich Low_complexity Low_complexity 1 22 0 1798 171 13 3 chr9 13402291 13402600 -104460027 - AluJb SINE Alu 0 312 1 419 315 61 17 chr9 13404042 13404223 -104458404 + MER5A DNA MER1_type 1 189 0 212 286 188 53 chr9 13404995 13405128 -104457499 + MIR3 SINE MIR 9 159 -49 29 70 0 0 chr9 13405187 13405244 -104457383 + AT_rich Low_complexity Low_complexity 1 57 0 620 335 61 50 chr9 13405644 13406340 -104456287 - L2 LINE L2 -245 3068 2321 14224 120 12 4 chr9 13406781 13409769 -104452858 - L1PA8A LINE L1 0 6446 3448 1058 87 19 0 chr9 13409782 13409943 -104452684 + L1P LINE L1 3865 4028 -2118 235 152 0 0 chr9 13409942 13409988 -104452639 - L1PA8A LINE L1 -3014 3447 3402 * 1146 151 234 12 chr9 13409993 13410245 -104452382 - AluSg1 SINE Alu -1 308 1 10798 170 14 41 chr9 13410245 13412793 -104449834 - L1PA12 LINE L1 -3061 3400 14 742 243 92 34 chr9 13412956 13413225 -104449402 - L1ME2 LINE L1 0 6162 5874 580 271 65 9 chr9 13413236 13413450 -104449177 - L1ME2 LINE L1 -1034 5112 4887 247 326 53 8 chr9 13413810 13413942 -104448685 + L2 LINE L2 2837 2974 -298 771 331 83 11 chr9 13414604 13414870 -104447757 - MLT1I LTR MaLR -1 408 124 515 282 50 44 chr9 13414963 13415144 -104447483 + MIR SINE MIR 75 256 -6 543 244 96 89 chr9 13415334 13415605 -104447022 - MLT1H1 LTR MaLR -196 359 87 9114 249 41 25 chr9 13415723 13417266 -104445361 - L1M4 LINE L1 -758 5388 3871 763 127 0 0 chr9 13417266 13417384 -104445243 - FLAM_C SINE Alu -15 118 1 9114 249 41 25 chr9 13417384 13418892 -104443735 - L1M4 LINE L1 -2275 3871 2285 1623 219 0 0 chr9 13418892 13419194 -104443433 - AluJb SINE Alu -9 303 2 9114 249 41 25 chr9 13419194 13419217 -104443410 - L1M4 LINE L1 -3861 2285 2264 30 45 0 0 chr9 13420373 13420417 -104442210 + AT_rich Low_complexity Low_complexity 1 44 0 750 130 0 0 chr9 13421269 13421377 -104441250 + L1PA8 LINE L1 6052 6159 -13 2832 104 17 7 chr9 13421881 13422270 -104440357 + MLT2A2 LTR ERVL 1 396 -57 534 16 0 0 chr9 13422270 13422333 -104440294 + (TA)n Simple_repeat Simple_repeat 1 63 0 2832 104 17 7 chr9 13422333 13422355 -104440272 + MLT2A2 LTR ERVL 396 416 -37 460 242 57 13 chr9 13423480 13423637 -104438990 - MER103 DNA DNA -2 164 1 239 140 20 0 chr9 13424074 13424124 -104438503 + (CA)n Simple_repeat Simple_repeat 2 52 0 185 0 40 0 chr9 13424126 13424151 -104438476 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 217 197 30 0 chr9 13424226 13424292 -104438335 + (TA)n Simple_repeat Simple_repeat 2 69 0 219 274 3 15 chr9 13424409 13424477 -104438150 + MIR SINE MIR 88 140 -68 192 40 0 0 chr9 13425291 13425316 -104437311 + (CA)n Simple_repeat Simple_repeat 2 26 0 22 0 0 0 chr9 13426803 13426825 -104435802 + AT_rich Low_complexity Low_complexity 1 22 0 191 359 51 26 chr9 13427044 13427161 -104435466 + L2 LINE L2 3148 3267 -5 2390 84 0 3 chr9 13428075 13428384 -104434243 - AluY SINE Alu -3 308 1 21 36 0 0 chr9 13428710 13428738 -104433889 + AT_rich Low_complexity Low_complexity 1 28 0 298 251 126 40 chr9 13428955 13429130 -104433497 + MIR SINE MIR 11 200 -62 292 282 23 30 chr9 13429248 13429379 -104433248 + GA-rich Low_complexity Low_complexity 3 132 0 189 0 0 0 chr9 13430207 13430228 -104432399 + (T)n Simple_repeat Simple_repeat 1 21 0 1587 187 14 10 chr9 13430241 13430535 -104432092 - 7SLRNA srpRNA srpRNA -13 307 13 243 61 0 0 chr9 13431659 13431692 -104430935 + (TC)n Simple_repeat Simple_repeat 2 34 0 503 197 27 158 chr9 13432589 13432666 -104429961 + Tigger3(Golem) DNA MER2_type 1 86 -2942 2110 95 21 0 chr9 13432666 13432951 -104429676 + AluSp SINE Alu 1 291 -22 503 197 27 158 chr9 13432951 13433056 -104429571 + Tigger3(Golem) DNA MER2_type 86 2585 -443 236 103 0 0 chr9 13433028 13433067 -104429560 + Tigger3(Golem) DNA MER2_type 2771 2809 -220 * 1326 174 55 0 chr9 13433231 13433466 -104429161 + Tigger3(Golem) DNA MER2_type 2780 3027 -2 787 142 0 16 chr9 13433562 13433689 -104428938 - FLAM_C SINE Alu -6 137 13 816 157 0 15 chr9 13433566 13433700 -104428927 - AluJo/FLAM SINE Alu -169 133 2 188 367 89 6 chr9 13433723 13433903 -104428724 + MIR SINE MIR 55 249 -13 204 67 0 0 chr9 13435162 13435192 -104427435 + (TTG)n Simple_repeat Simple_repeat 2 31 0 2191 91 0 0 chr9 13435196 13435470 -104427157 - AluSc SINE Alu -33 276 3 1270 214 162 15 chr9 13435600 13436007 -104426620 + MLT1C LTR MaLR 1 467 0 1628 205 44 48 chr9 13436181 13436615 -104426012 - MER63B DNA MER1_type -4 432 1 1074 191 0 43 chr9 13438342 13438573 -104424054 - AluJo SINE Alu -6 306 86 204 125 0 0 chr9 13438971 13439003 -104423624 + (CATATA)n Simple_repeat Simple_repeat 2 33 0 201 213 0 0 chr9 13441340 13441387 -104421240 + (CGG)n Simple_repeat Simple_repeat 3 49 0 275 274 78 29 chr9 13442347 13442449 -104420178 + MIR3 SINE MIR 71 177 -31 508 67 53 0 chr9 13443407 13443482 -104419145 + MADE1 DNA Mariner 2 80 0 391 308 68 0 chr9 13443796 13443942 -104418685 + MIR SINE MIR 53 208 -54 190 275 0 0 chr9 13444231 13444271 -104418356 - L2 LINE L2 -16 3256 3217 1311 159 112 35 chr9 13444349 13444663 -104417964 - MER44D DNA MER2_type 0 609 2 326 278 154 84 chr9 13444675 13444755 -104417872 - MIR SINE MIR -14 248 175 2463 59 13 0 chr9 13444755 13445058 -104417569 - AluY SINE Alu -4 307 1 326 278 154 84 chr9 13445058 13445204 -104417423 - MIR SINE MIR -87 175 6 265 189 19 0 chr9 13445980 13446033 -104416594 - MIR SINE MIR -111 151 98 24 53 0 0 chr9 13446211 13446249 -104416378 + AT_rich Low_complexity Low_complexity 1 38 0 9358 155 28 7 chr9 13446384 13446447 -104416180 - L1MA3 LINE L1 -106 7618 7558 2272 78 3 0 chr9 13446447 13446759 -104415868 - AluSp SINE Alu 0 313 1 9358 155 28 7 chr9 13446759 13449324 -104413303 - L1MA3 LINE L1 -166 7558 4929 9594 176 189 19 chr9 13449340 13451450 -104411177 - L1MA3 LINE L1 -5091 2474 8 337 289 0 35 chr9 13451548 13451662 -104410965 - MIR SINE MIR -1 261 152 359 40 0 20 chr9 13452021 13452071 -104410556 + (TA)n Simple_repeat Simple_repeat 2 50 0 240 86 0 0 chr9 13452811 13452846 -104409781 + (TATATG)n Simple_repeat Simple_repeat 4 38 0 263 357 10 0 chr9 13453061 13453159 -104409468 - L3 LINE CR1 -87 1490 1392 1840 152 31 0 chr9 13453319 13453698 -104408929 + AluSx SINE Alu 1 388 0 472 270 77 61 chr9 13453796 13454122 -104408505 + L1ME4a LINE L1 5496 5826 -295 343 205 83 70 chr9 13454171 13454327 -104408300 + L1ME4a LINE L1 5961 6118 -3 905 203 5 42 chr9 13454332 13454549 -104408078 + AluJo SINE Alu 65 273 -39 195 42 0 0 chr9 13454580 13454604 -104408023 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 23 0 0 0 chr9 13455594 13455617 -104407010 + AT_rich Low_complexity Low_complexity 1 23 0 470 187 32 24 chr9 13456999 13457122 -104405505 - L1MC4 LINE L1 0 8042 7919 183 80 0 0 chr9 13457132 13457157 -104405470 + (TC)n Simple_repeat Simple_repeat 1 25 0 216 0 0 0 chr9 13457178 13457202 -104405425 + (CA)n Simple_repeat Simple_repeat 2 25 0 199 329 82 14 chr9 13460602 13460748 -104401879 + L2 LINE L2 2885 3040 -232 24 32 0 0 chr9 13460870 13460901 -104401726 + AT_rich Low_complexity Low_complexity 1 31 0 249 362 73 34 chr9 13462898 13463075 -104399552 + MIR3 SINE MIR 17 200 -8 2349 65 20 0 chr9 13463399 13463692 -104398935 + AluY SINE Alu 1 299 -12 997 199 39 31 chr9 13463715 13463971 -104398656 - L1MA9 LINE L1 -40 6272 6015 316 289 78 82 chr9 13463999 13464231 -104398396 - MIR SINE MIR -4 258 28 1149 129 12 0 chr9 13464511 13464681 -104397946 + MSTA LTR MaLR 257 428 0 215 136 68 0 chr9 13465232 13465276 -104397351 + (TATG)n Simple_repeat Simple_repeat 2 48 0 2253 140 46 10 chr9 13466046 13466459 -104396168 + MSTA LTR MaLR 1 428 0 315 404 67 5 chr9 13467067 13467260 -104395367 - MIR3 SINE MIR -2 206 2 1967 143 7 0 chr9 13468147 13468441 -104394186 - AluSx SINE Alu -14 298 3 29 47 0 0 chr9 13468463 13468506 -104394121 + AT_rich Low_complexity Low_complexity 1 43 0 363 197 66 0 chr9 13468676 13468752 -104393875 + MER58A DNA MER1_type 18 98 -9 22 0 0 0 chr9 13468820 13468842 -104393785 + AT_rich Low_complexity Low_complexity 1 22 0 1157 212 28 107 chr9 13469918 13470414 -104392213 - LTR37B LTR ERV1 0 468 12 562 14 0 0 chr9 13470773 13470846 -104391781 + AluY SINE Alu 232 304 -5 1441 67 62 0 chr9 13470853 13470895 -104391732 + AluY SINE Alu 80 118 -193 216 0 0 0 chr9 13470895 13470919 -104391708 + (TA)n Simple_repeat Simple_repeat 2 25 0 1441 67 62 0 chr9 13470919 13471069 -104391558 + AluY SINE Alu 118 284 -27 255 79 0 0 chr9 13471069 13471107 -104391520 + (CTAA)n Simple_repeat Simple_repeat 3 40 0 217 299 77 34 chr9 13471233 13471350 -104391277 + MIR SINE MIR 21 142 -120 7584 179 108 70 chr9 13471356 13472128 -104390499 - L1MCa LINE L1 -3881 2545 1804 977 92 0 7 chr9 13472128 13472270 -104390357 - L1MB3 LINE L1 -7 6176 6036 7584 179 108 70 chr9 13472270 13472659 -104389968 - L1MCa LINE L1 -4622 1804 1431 2162 172 52 7 chr9 13472659 13473067 -104389560 - MSTB LTR MaLR 0 426 1 7584 179 108 70 chr9 13473067 13474335 -104388292 - L1MCa LINE L1 -4995 1431 23 227 320 26 0 chr9 13474389 13474467 -104388160 + MIR SINE MIR 183 262 0 180 0 0 0 chr9 13474683 13474703 -104387924 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1589 257 44 55 chr9 13475523 13476071 -104386556 - MLT1F LTR MaLR 0 542 1 197 211 0 0 chr9 13476071 13476109 -104386518 + MER5A DNA MER1_type 37 74 -115 3006 206 87 51 chr9 13476938 13477960 -104384667 - MER63D DNA MER1_type 0 1061 3 258 233 11 78 chr9 13480161 13480251 -104382376 - MIR SINE MIR -57 151 68 1272 148 95 15 chr9 13480819 13481083 -104381544 - L1MA5A LINE L1 -4 6293 6009 402 256 22 0 chr9 13481174 13481264 -104381363 + Charlie1 DNA MER1_type 1 92 -2669 2184 109 0 0 chr9 13481350 13481653 -104380974 + AluY SINE Alu 9 311 0 4490 170 96 36 chr9 13481653 13482779 -104379848 + Charlie1 DNA MER1_type 1564 2756 -5 259 254 94 85 chr9 13483122 13483441 -104379186 + L1ME4a LINE L1 5797 6118 -3 622 245 97 46 chr9 13483486 13483878 -104378749 + L1ME4a LINE L1 5675 6086 -35 22 0 0 0 chr9 13484288 13484310 -104378317 + AT_rich Low_complexity Low_complexity 1 22 0 1816 221 34 86 chr9 13485305 13485618 -104377009 + L1M4 LINE L1 3170 3498 -2648 1882 151 24 0 chr9 13485618 13485909 -104376718 + AluSx SINE Alu 1 298 -14 1816 221 34 86 chr9 13485909 13486364 -104376263 + L1M4 LINE L1 3498 3898 -2248 325 300 83 8 chr9 13486910 13487030 -104375597 - MLT1J LTR MaLR -253 258 130 973 280 83 21 chr9 13487030 13487400 -104375227 + MLT1I LTR MaLR 1 393 -16 1513 194 127 17 chr9 13487400 13487803 -104374824 + Charlie1b DNA MER1_type 1 447 -76 597 231 15 15 chr9 13488327 13488457 -104374170 + FLAM_A SINE Alu 1 130 -3 2304 59 0 7 chr9 13488640 13488930 -104373697 + AluY SINE Alu 24 311 0 2206 92 0 0 chr9 13489386 13489696 -104372931 + AluSx SINE Alu 1 310 0 206 264 38 0 chr9 13490520 13490573 -104372054 - L2 LINE L2 -8 3305 3251 1180 148 160 49 chr9 13490613 13490876 -104371751 - AluJb SINE Alu -10 292 1 2221 68 4 0 chr9 13491842 13492122 -104370505 + AluY SINE Alu 1 281 -30 293 267 95 26 chr9 13492447 13492563 -104370064 + MIR SINE MIR 124 247 -15 433 276 126 15 chr9 13494658 13494857 -104367770 - MIR SINE MIR -5 257 37 2162 69 0 7 chr9 13496111 13496386 -104366241 + AluY SINE Alu 35 307 -4 1778 161 10 0 chr9 13496417 13496708 -104365919 - AluJb SINE Alu -5 307 14 701 219 0 0 chr9 13496736 13496864 -104365763 + FLAM_A SINE Alu 1 128 -5 2598 288 97 15 chr9 13496892 13498152 -104364475 + L2 LINE L2 1923 3302 -11 298 241 46 56 chr9 13498190 13498298 -104364329 - L2 LINE L2 -17 3255 3149 1005 171 136 64 chr9 13498307 13498587 -104364040 + MLT1D LTR MaLR 3 302 -203 618 246 66 6 chr9 13499695 13499862 -104362765 + MIR SINE MIR 85 261 -1 268 301 32 0 chr9 13500032 13500125 -104362502 + MLT1J LTR MaLR 106 201 -310 26 74 0 0 chr9 13500828 13500882 -104361745 + AT_rich Low_complexity Low_complexity 1 54 0 8872 103 19 7 chr9 13501660 13502932 -104359695 - HSMAR1 DNA Mariner 0 1287 1 31 44 0 0 chr9 13503994 13504039 -104358588 + AT_rich Low_complexity Low_complexity 1 45 0 42 36 0 0 chr9 13504685 13504741 -104357886 + AT_rich Low_complexity Low_complexity 1 56 0 2202 108 7 0 chr9 13504827 13505134 -104357493 - AluSc SINE Alu 0 309 1 279 125 0 0 chr9 13505401 13505441 -104357186 - Alu SINE Alu -259 41 2 909 171 74 11 chr9 13505443 13505618 -104357009 - MER47A DNA MER2_type -180 186 1 1806 170 0 0 chr9 13507664 13507940 -104354687 + AluSx SINE Alu 1 276 -36 189 0 0 0 chr9 13507940 13507961 -104354666 + (TG)n Simple_repeat Simple_repeat 2 22 0 407 263 126 63 chr9 13508100 13508736 -104353891 + L1MC5 LINE L1 7260 7935 -26 1979 286 60 21 chr9 13508785 13509596 -104353031 - L1ME LINE L1 -5201 869 27 2482 265 93 23 chr9 13510428 13511641 -104350986 - L1ME LINE L1 -2889 3191 1902 1602 222 22 17 chr9 13511641 13512002 -104350625 + MLT1A1 LTR MaLR 1 363 -2 2482 265 93 23 chr9 13512002 13512127 -104350500 - L1ME LINE L1 -4178 1902 1787 1840 161 0 31 chr9 13512201 13512523 -104350104 + AluJb SINE Alu 1 312 0 816 284 83 75 chr9 13512533 13513782 -104348845 - L1ME LINE L1 -4693 1568 324 1734 200 33 80 chr9 13514183 13514226 -104348401 + MLT1A1 LTR MaLR 3 46 -319 837 152 8 0 chr9 13514226 13514358 -104348269 + FLAM_C SINE Alu 1 133 0 1734 200 33 80 chr9 13514358 13514704 -104347923 + MLT1A1 LTR MaLR 46 365 0 339 292 51 36 chr9 13514722 13514859 -104347768 - L1ME LINE L1 -5855 215 77 250 122 0 0 chr9 13514859 13514900 -104347727 + U5 snRNA snRNA 1 41 -75 468 0 0 0 chr9 13517202 13517254 -104345373 + (CA)n Simple_repeat Simple_repeat 2 53 0 278 300 12 0 chr9 13517325 13517485 -104345142 + (TA)n Simple_repeat Simple_repeat 1 162 0 231 184 35 0 chr9 13517520 13517607 -104345020 + (TA)n Simple_repeat Simple_repeat 1 90 0 312 327 25 6 chr9 13518596 13518755 -104343872 + L1ME4a LINE L1 5589 5750 -371 27 49 0 0 chr9 13518791 13518832 -104343795 + AT_rich Low_complexity Low_complexity 1 41 0 26 50 0 0 chr9 13518851 13518891 -104343736 + AT_rich Low_complexity Low_complexity 1 40 0 391 310 78 4 chr9 13518900 13519145 -104343482 + L1ME3A LINE L1 5683 5945 -225 281 235 17 109 chr9 13519218 13519337 -104343290 + L1ME3A LINE L1 5965 6072 -98 2585 98 8 11 chr9 13519463 13519839 -104342788 - THE1C LTR MaLR 0 375 1 1542 43 0 34 chr9 13520637 13520844 -104341783 + L1PA5 LINE L1 5955 6154 0 21 0 0 0 chr9 13521197 13521218 -104341409 + AT_rich Low_complexity Low_complexity 1 21 0 300 381 0 0 chr9 13523224 13523329 -104339298 + GA-rich Low_complexity Low_complexity 4 108 0 370 296 61 0 chr9 13524240 13524338 -104338289 + L2 LINE L2 3150 3253 -19 272 404 31 15 chr9 13524975 13525235 -104337392 + LTR16C LTR ERVL 215 478 -13 763 360 92 14 chr9 13525345 13525923 -104336704 + MERVL LTR ERVL 2637 3259 -2226 186 71 0 0 chr9 13526310 13526338 -104336289 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 468 263 9 9 chr9 13526342 13526456 -104336171 - FLAM_A SINE Alu -19 114 1 386 290 94 12 chr9 13527325 13527580 -104335047 + L1ME4a LINE L1 5845 6120 -1 1855 161 0 0 chr9 13528833 13529119 -104333508 + AluSx SINE Alu 3 288 -24 273 29 0 0 chr9 13529120 13529154 -104333473 + (GGAA)n Simple_repeat Simple_repeat 1 34 0 25 31 0 0 chr9 13529195 13529227 -104333400 + AT_rich Low_complexity Low_complexity 1 32 0 2086 138 0 13 chr9 13529438 13529742 -104332885 + AluSx SINE Alu 1 300 -12 769 263 6 0 chr9 13529767 13529942 -104332685 + MER45A DNA AcHobo 1 176 -2 265 250 0 0 chr9 13530489 13530541 -104332086 - L2 LINE L2 -38 3234 3183 1429 214 7 23 chr9 13530552 13530861 -104331766 - AluJo SINE Alu -8 304 1 504 208 9 28 chr9 13531148 13531254 -104331373 + L2 LINE L2 3210 3313 0 26 0 0 0 chr9 13532304 13532330 -104330297 + AT_rich Low_complexity Low_complexity 1 26 0 420 210 0 0 chr9 13532384 13532465 -104330162 + MIR SINE MIR 182 262 0 245 197 49 131 chr9 13532467 13532589 -104330038 - MIR SINE MIR -70 192 81 362 309 53 27 chr9 13532852 13533040 -104329587 - L2 LINE L2 -2 3311 3119 29 0 0 0 chr9 13533201 13533230 -104329397 + AT_rich Low_complexity Low_complexity 1 29 0 1421 123 0 0 chr9 13533243 13533438 -104329189 + AluSx SINE Alu 3 197 -115 228 208 91 0 chr9 13533453 13533530 -104329097 + L1 LINE L1 3882 3965 -2181 936 191 5 36 chr9 13533581 13533775 -104328852 - MER5A DNA MER1_type -1 188 1 23 33 0 0 chr9 13535883 13535913 -104326714 + AT_rich Low_complexity Low_complexity 1 30 0 231 358 20 20 chr9 13536109 13536257 -104326370 + MIR SINE MIR 114 261 -1 22 0 0 0 chr9 13536343 13536365 -104326262 + AT_rich Low_complexity Low_complexity 1 22 0 27898 99 8 3 chr9 13536499 13541438 -104321189 - L1PA7 LINE L1 -11 6143 1178 1579 157 92 0 chr9 13541658 13541939 -104320688 - AluJb SINE Alu -5 307 1 1131 143 67 13 chr9 13542140 13542364 -104320263 - Tigger2 DNA MER2_type 0 2718 2483 84 36 0 0 chr9 13542364 13542476 -104320151 + AT_rich Low_complexity Low_complexity 1 112 0 1365 143 5 5 chr9 13542476 13542693 -104319934 - Tigger2 DNA MER2_type -234 2484 2268 1555 201 6 13 chr9 13542696 13543009 -104319618 + AluSx SINE Alu 1 311 -1 363 191 0 0 chr9 13543014 13543077 -104319550 - Tigger2 DNA MER2_type -2655 63 1 210 268 0 18 chr9 13543268 13543324 -104319303 + MIR SINE MIR 197 251 -11 732 260 46 25 chr9 13544755 13545104 -104317523 + L1MB1 LINE L1 3085 3449 -4116 703 224 0 0 chr9 13545105 13545239 -104317388 + AluJo SINE Alu 1 134 -178 410 250 8 0 chr9 13545240 13545360 -104317267 + L1MB1 LINE L1 3447 3567 -4000 856 170 14 7 chr9 13545396 13545543 -104317084 - AluJb SINE Alu -20 292 145 3747 78 10 10 chr9 13545577 13546091 -104316536 + L1PA10 LINE L1 5654 6167 -1 21 0 0 0 chr9 13546094 13546115 -104316512 + AT_rich Low_complexity Low_complexity 1 21 0 1151 255 10 3 chr9 13546122 13546420 -104316207 + L1MB1 LINE L1 6082 6381 -1184 430 205 0 0 chr9 13546562 13546640 -104315987 - AluJ/FRAM SINE Alu -19 293 216 4591 194 19 9 chr9 13546654 13547879 -104314748 + L1MB1 LINE L1 6344 7583 -4 293 250 0 42 chr9 13548017 13548089 -104314538 + L2 LINE L2 3241 3309 -4 229 342 13 0 chr9 13548516 13548592 -104314035 - L2 LINE L2 -299 2973 2897 3994 127 28 8 chr9 13548838 13549490 -104313137 + Tigger3b DNA MER2_type 32 696 -535 1227 125 198 32 chr9 13549486 13549734 -104312893 + Tigger3b DNA MER2_type 943 1231 0 * 201 39 0 0 chr9 13551404 13551430 -104311197 + (TA)n Simple_repeat Simple_repeat 2 27 0 23 33 0 0 chr9 13551440 13551470 -104311157 + AT_rich Low_complexity Low_complexity 1 30 0 212 331 55 31 chr9 13551803 13551930 -104310697 - L2 LINE L2 -830 2484 2355 21 0 0 0 chr9 13552067 13552088 -104310539 + AT_rich Low_complexity Low_complexity 1 21 0 186 103 0 0 chr9 13553115 13553144 -104309483 + (TG)n Simple_repeat Simple_repeat 2 30 0 31 96 0 0 chr9 13553431 13553525 -104309102 + AT_rich Low_complexity Low_complexity 1 94 0 1302 53 0 24 chr9 13553608 13553777 -104308850 + AluY SINE Alu 134 298 -13 25 51 0 0 chr9 13554733 13554772 -104307855 + AT_rich Low_complexity Low_complexity 1 39 0 24 0 0 0 chr9 13554938 13554962 -104307665 + AT_rich Low_complexity Low_complexity 1 24 0 5310 20 0 0 chr9 13555697 13556307 -104306320 + L1PA2 LINE L1 5545 6154 -1 499 176 0 11 chr9 13556995 13557086 -104305541 + HY4 scRNA scRNA 1 90 -3 340 229 42 76 chr9 13557644 13557762 -104304865 + MIR3 SINE MIR 54 167 -41 2154 175 56 10 chr9 13558137 13558549 -104304078 - MSTB1 LTR MaLR -1 431 1 867 283 88 34 chr9 13558822 13559321 -104303306 + L2 LINE L2 1447 1972 -1342 20223 160 70 53 chr9 13559326 13559392 -104303235 + L1MA2 LINE L1 13 76 -7647 2381 71 3 13 chr9 13559392 13559702 -104302925 - AluY SINE Alu -4 307 1 20223 160 70 53 chr9 13559702 13562662 -104299965 + L1MA2 LINE L1 76 2985 -4738 2034 121 16 23 chr9 13562662 13562968 -104299659 + AluSc SINE Alu 1 304 -5 20223 160 70 53 chr9 13562968 13565341 -104297286 + L1MA2 LINE L1 2985 5317 -2406 1966 163 28 17 chr9 13565341 13565696 -104296931 - THE1C LTR MaLR 0 375 17 20223 160 70 53 chr9 13565696 13567529 -104295098 + L1MA2 LINE L1 5317 7723 0 228 242 91 0 chr9 13567541 13567607 -104295020 + L2 LINE L2 1996 2067 -1247 357 238 73 78 chr9 13567608 13567814 -104294813 - L1ME3A LINE L1 -1 6169 5965 233 200 0 38 chr9 13567896 13567976 -104294651 - L1MC5 LINE L1 -431 7530 7454 617 314 34 25 chr9 13568061 13568300 -104294327 + L2 LINE L2 2461 2701 -613 713 265 88 8 chr9 13568373 13568622 -104294005 - L1MC4 LINE L1 -233 7809 7541 712 162 14 21 chr9 13568632 13568774 -104293853 - L1MC1 LINE L1 0 6333 6193 1165 141 0 198 chr9 13568777 13569145 -104293482 + L1MC2 LINE L1 5907 6201 -143 1163 123 5 5 chr9 13569163 13569358 -104293269 - L1MC1 LINE L1 -435 5898 5704 1327 123 50 3 chr9 13569360 13569678 -104292949 - L1MCa LINE L1 -4128 2298 1926 2816 16 0 0 chr9 13569679 13569990 -104292637 + AluYa5 SINE Alu 1 311 0 3843 192 23 54 chr9 13570098 13570694 -104291933 - L1MCa LINE L1 -5518 908 295 237 65 0 0 chr9 13570694 13570725 -104291902 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 1812 161 0 0 chr9 13570729 13571003 -104291624 - AluSx SINE Alu -37 275 2 3843 192 23 54 chr9 13571003 13571257 -104291370 - L1MCa LINE L1 -6134 292 79 2018 251 238 22 chr9 13571288 13572157 -104290470 - L1MC4 LINE L1 -528 7514 6458 1777 156 38 27 chr9 13572607 13572978 -104289649 + THE1C LTR MaLR 1 375 0 484 289 93 81 chr9 13572998 13573604 -104289023 + L2 LINE L2 2687 3309 -4 230 346 0 25 chr9 13574081 13574162 -104288465 + L2 LINE L2 3232 3310 -3 21 71 0 0 chr9 13574569 13574611 -104288016 + AT_rich Low_complexity Low_complexity 1 42 0 1911 119 0 0 chr9 13576077 13576345 -104286282 + AluSq SINE Alu 46 313 0 2164 103 3 3 chr9 13576433 13576724 -104285903 + AluSg1 SINE Alu 1 291 -18 316 269 14 92 chr9 13576792 13576933 -104285694 + MIR3 SINE MIR 13 142 -66 208 239 0 0 chr9 13577794 13577840 -104284787 + CT-rich Low_complexity Low_complexity 2 47 0 1817 145 46 36 chr9 13577927 13578231 -104284396 + AluSx SINE Alu 4 310 -2 190 261 0 90 chr9 13578836 13578947 -104283680 + MIR SINE MIR 147 247 -15 707 204 34 0 chr9 13579518 13579665 -104282962 - MER3 DNA MER1_type -10 199 48 2469 167 101 83 chr9 13579675 13580346 -104282281 - LTR8 LTR ERV1 -8 683 1 2176 122 10 0 chr9 13581244 13581538 -104281089 + AluSx SINE Alu 1 297 -15 35 0 0 0 chr9 13582034 13582069 -104280558 + AT_rich Low_complexity Low_complexity 1 35 0 387 215 20 40 chr9 13582900 13582921 -104279706 - L1MA10 LINE L1 -3 6331 6311 1178 222 43 40 chr9 13582921 13583273 -104279354 - L1ME2 LINE L1 -12 6152 5800 1587 245 57 45 chr9 13583331 13583841 -104278786 - MLT1E2 LTR MaLR 0 626 111 354 23 0 0 chr9 13583950 13583993 -104278634 + (TG)n Simple_repeat Simple_repeat 2 44 0 226 343 14 14 chr9 13584388 13584461 -104278166 + MER115 DNA AcHobo 324 396 -297 460 265 73 8 chr9 13584529 13584693 -104277934 + Zaphod DNA AcHobo 507 4030 -1 286 333 62 6 chr9 13584772 13584934 -104277693 - L1MEd LINE L1 -5663 456 286 1833 155 3 3 chr9 13585289 13585607 -104277020 + AluSx SINE Alu 1 318 0 642 347 70 66 chr9 13585773 13586517 -104276110 + L2 LINE L2 2288 3032 -240 240 226 160 0 chr9 13586514 13586620 -104276007 + MER113 DNA MER1_type? 94 216 -305 * 230 261 225 29 chr9 13586696 13586834 -104275793 + MIR3 SINE MIR 20 184 -24 24 32 0 0 chr9 13587187 13587218 -104275409 + AT_rich Low_complexity Low_complexity 1 31 0 183 182 61 0 chr9 13587312 13587378 -104275249 + (TGAA)n Simple_repeat Simple_repeat 1 70 0 446 316 15 25 chr9 13587926 13588122 -104274505 + L2 LINE L2 3118 3311 -2 561 84 0 0 chr9 13589292 13589363 -104273264 - AluS SINE Alu -232 80 10 280 172 172 13 chr9 13589919 13590070 -104272557 + MER33 DNA MER1_type 48 222 -102 398 148 69 0 chr9 13590145 13590246 -104272381 + MER33 DNA MER1_type 210 317 -46 578 240 176 28 chr9 13590664 13591023 -104271604 + L1MC5 LINE L1 7474 7885 -76 27 0 0 0 chr9 13591763 13591790 -104270837 + AT_rich Low_complexity Low_complexity 1 27 0 281 358 74 20 chr9 13592110 13592258 -104270369 - L2 LINE L2 -1 3271 3116 2219 122 0 0 chr9 13593586 13593881 -104268746 + AluSx SINE Alu 1 295 -17 236 233 244 22 chr9 13594346 13594526 -104268101 - MLT1L LTR MaLR -80 535 316 348 183 0 0 chr9 13594627 13594687 -104267940 - MER81 DNA DNA 0 114 55 542 261 0 39 chr9 13594848 13595028 -104267599 - MER5B DNA MER1_type -4 174 2 505 336 85 9 chr9 13595745 13595968 -104266659 - MIR SINE MIR -21 241 2 268 298 63 31 chr9 13596679 13596816 -104265811 + MIR3 SINE MIR 26 169 -39 2812 128 14 0 chr9 13597228 13597656 -104264971 - MER57B LTR ERV1 0 434 1 2522 137 31 19 chr9 13597667 13598261 -104264366 + MER4E LTR ERV1 1 779 0 706 163 111 58 chr9 13598545 13598735 -104263892 - MER3 DNA MER1_type 0 209 10 26 0 0 0 chr9 13599782 13599808 -104262819 + AT_rich Low_complexity Low_complexity 1 26 0 2229 110 3 10 chr9 13599815 13600116 -104262511 + AluSp SINE Alu 1 299 -14 185 176 137 0 chr9 13600215 13600266 -104262361 - MIR SINE MIR -98 164 107 714 306 103 16 chr9 13600331 13600756 -104261871 - MLT1K LTR MaLR 0 588 127 437 164 58 174 chr9 13601024 13601231 -104261396 + MLT1D LTR MaLR 5 187 -318 705 243 17 6 chr9 13602593 13602766 -104259861 - LTR40a LTR ERVL -344 175 1 377 255 128 4 chr9 13603666 13604051 -104258576 - L1MC4a LINE L1 -216 5905 5523 252 359 0 13 chr9 13604525 13604603 -104258024 + MIR SINE MIR 3 79 -183 446 303 73 18 chr9 13605027 13605192 -104257435 + MIR SINE MIR 77 250 -12 268 221 263 0 chr9 13605214 13605309 -104257318 + L2 LINE L2 3192 3311 -2 1519 128 0 9 chr9 13605521 13605748 -104256879 - AluJb SINE Alu -4 308 84 23 0 0 0 chr9 13607301 13607324 -104255303 + AT_rich Low_complexity Low_complexity 1 23 0 314 370 25 0 chr9 13607542 13607661 -104254966 - L2 LINE L2 -17 3255 3134 22 35 0 0 chr9 13607686 13607715 -104254912 + AT_rich Low_complexity Low_complexity 1 29 0 332 222 0 0 chr9 13607948 13608020 -104254607 - MIR SINE MIR -21 241 170 2167 134 0 0 chr9 13608389 13608696 -104253931 + AluSx SINE Alu 1 307 -5 1047 63 0 0 chr9 13608856 13609012 -104253615 + AluY SINE Alu 170 325 0 215 253 160 13 chr9 13610110 13610185 -104252442 - L2 LINE L2 -1 3271 3186 2456 92 0 0 chr9 13610519 13610822 -104251805 + AluSx SINE Alu 1 303 -9 306 309 206 6 chr9 13611756 13611921 -104250706 + MIR SINE MIR 45 242 -20 22 35 0 0 chr9 13613841 13613870 -104248757 + AT_rich Low_complexity Low_complexity 1 29 0 728 187 0 8 chr9 13613870 13613993 -104248634 + FLAM_C SINE Alu 1 122 -21 3602 45 2 0 chr9 13614335 13614778 -104247849 + L1PA6 LINE L1 5708 6151 -3 25 0 0 0 chr9 13614985 13615010 -104247617 + AT_rich Low_complexity Low_complexity 1 25 0 322 250 130 10 chr9 13616189 13616289 -104246338 - L2 LINE L2 -22 3291 3180 287 127 0 36 chr9 13616291 13616346 -104246281 - MLT2B1 LTR ERVL 0 520 468 282 250 0 0 chr9 13616434 13616522 -104246105 + (TA)n Simple_repeat Simple_repeat 2 89 0 1030 209 45 126 chr9 13616522 13616966 -104245661 - MLT2B1 LTR ERVL -40 480 73 552 281 21 68 chr9 13616988 13617269 -104245358 + L2 LINE L2 2212 2479 -835 451 371 38 26 chr9 13617552 13617865 -104244762 + L2 LINE L2 2872 3188 -84 1699 177 7 30 chr9 13618485 13618784 -104243843 - AluJo SINE Alu -20 292 1 3203 56 2 71 chr9 13618822 13619303 -104243324 + LTR7 LTR ERV1 1 448 -2 18764 85 41 18 chr9 13619305 13622224 -104240403 + HERVH LTR ERV1 1 2987 -4726 804 149 20 0 chr9 13622218 13622366 -104240261 + HERVH LTR ERV1 3140 3290 -4423 * 3152 113 4 10 chr9 13622356 13622861 -104239766 + HERVH LTR ERV1 3492 3993 -3720 4063 140 1 3 chr9 13622863 13623526 -104239101 + HERVH LTR ERV1 4488 5149 -2564 1280 120 18 40 chr9 13623527 13623752 -104238875 + HERVH LTR ERV1 5600 5819 -1894 2196 88 59 13 chr9 13623752 13624125 -104238502 + HERVH LTR ERV1 7324 7713 0 3222 54 2 71 chr9 13624125 13624606 -104238021 + LTR7 LTR ERV1 1 448 -2 24 32 0 0 chr9 13624714 13624745 -104237882 + AT_rich Low_complexity Low_complexity 1 31 0 2195 206 40 6 chr9 13624753 13625254 -104237373 - MLT1F1 LTR MaLR 0 567 50 1184 98 10 26 chr9 13625283 13625477 -104237150 - L1PB1 LINE L1 -2 6149 5959 457 105 51 13 chr9 13625572 13625711 -104236916 - L1PBa LINE L1 -5463 1400 1112 2230 84 0 3 chr9 13625711 13626022 -104236605 + AluY SINE Alu 1 310 0 1785 132 0 4 chr9 13626129 13626380 -104236247 - AluSc SINE Alu -59 250 1 207 231 0 46 chr9 13626406 13626471 -104236156 + CT-rich Low_complexity Low_complexity 5 66 0 297 345 98 5 chr9 13626614 13626817 -104235810 - HERV16 LTR ERVL -3422 1574 1353 529 347 10 40 chr9 13626826 13627126 -104235501 - HERV16 LTR ERVL -3760 1236 946 567 230 32 28 chr9 13627130 13627354 -104235273 - MER61D LTR ERV1 0 743 222 765 350 34 11 chr9 13627898 13628366 -104234261 - HERV16 LTR ERVL -4154 842 364 978 294 72 11 chr9 13628689 13629063 -104233564 - LTR16A LTR ERVL -8 442 46 204 300 11 33 chr9 13630584 13630674 -104231953 - MIR SINE MIR -70 192 105 741 256 125 14 chr9 13631063 13631414 -104231213 + L1MC4 LINE L1 7525 7914 -128 34 24 0 0 chr9 13631427 13631468 -104231159 + AT_rich Low_complexity Low_complexity 1 41 0 418 153 66 3 chr9 13631468 13631811 -104230816 + (TA)n Simple_repeat Simple_repeat 1 364 0 257 280 54 0 chr9 13631814 13631907 -104230720 + L1MC4 LINE L1 7929 8026 -16 805 229 82 16 chr9 13633616 13633861 -104228766 + MIR SINE MIR 1 261 -1 199 284 42 63 chr9 13634195 13634290 -104228337 + L2 LINE L2 3140 3232 -40 2861 100 33 113 chr9 13635026 13635634 -104226993 - L1PA12 LINE L1 -16 6152 5594 2401 94 0 0 chr9 13636426 13636733 -104225894 + AluSc SINE Alu 1 307 -2 798 251 125 46 chr9 13636758 13637239 -104225388 - MLT1G3 LTR MaLR -5 537 2 270 136 0 0 chr9 13637374 13637418 -104225209 + (TG)n Simple_repeat Simple_repeat 1 44 0 26 74 0 0 chr9 13638379 13638433 -104224194 + AT_rich Low_complexity Low_complexity 1 54 0 381 317 83 24 chr9 13638445 13638735 -104223892 + L1M4 LINE L1 3869 4175 -1971 298 175 0 0 chr9 13638768 13638831 -104223796 - L1MA7 LINE L1 -4 6287 6225 1743 195 74 18 chr9 13639094 13639529 -104223098 - MLT1C LTR MaLR 0 467 9 203 0 0 36 chr9 13639775 13639803 -104222824 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1832 110 28 62 chr9 13639811 13640101 -104222526 - AluSx SINE Alu -32 280 1 315 277 189 69 chr9 13640104 13640263 -104222364 + MER5B DNA MER1_type 1 178 0 360 252 64 120 chr9 13640697 13640931 -104221696 + L1MC/D LINE L1 5564 5784 -2024 239 226 17 17 chr9 13643835 13643950 -104218677 + (TA)n Simple_repeat Simple_repeat 1 115 0 333 0 0 0 chr9 13643990 13644027 -104218600 + (CA)n Simple_repeat Simple_repeat 2 38 0 192 313 106 39 chr9 13644110 13644289 -104218338 - MIR SINE MIR -55 207 17 22 0 0 0 chr9 13644694 13644716 -104217911 + AT_rich Low_complexity Low_complexity 1 22 0 30 59 0 0 chr9 13645209 13645260 -104217367 + AT_rich Low_complexity Low_complexity 1 51 0 22 35 0 0 chr9 13645293 13645322 -104217305 + AT_rich Low_complexity Low_complexity 1 29 0 213 232 34 147 chr9 13645471 13645648 -104216979 + L3 LINE CR1 1162 1318 -259 573 132 0 11 chr9 13645677 13645768 -104216859 + MLT2B1 LTR ERVL 1 90 -430 * 1152 245 4 4 chr9 13645754 13645995 -104216632 - MLT1A1 LTR MaLR -124 241 1 2501 50 3 0 chr9 13646334 13646634 -104215993 - AluY SINE Alu -7 304 4 733 267 194 22 chr9 13646640 13647231 -104215396 + L2 LINE L2 2519 3313 0 363 278 132 103 chr9 13647521 13647939 -104214688 + MLT1J LTR MaLR 33 462 -49 2291 101 3 0 chr9 13647981 13648287 -104214340 - AluSx SINE Alu -5 307 1 21 0 0 0 chr9 13648321 13648342 -104214285 + AT_rich Low_complexity Low_complexity 1 21 0 334 339 43 21 chr9 13648445 13648631 -104213996 - MIR SINE MIR -14 248 59 246 203 14 14 chr9 13649224 13649293 -104213334 - L1MCa LINE L1 -4353 2073 2005 1676 270 59 26 chr9 13650635 13651127 -104211500 - MLT1H LTR MaLR 0 549 42 565 250 9 0 chr9 13651136 13651252 -104211375 + MLT1H LTR MaLR 238 354 -195 1976 25 0 13 chr9 13651703 13651939 -104210688 - L1PA3 LINE L1 -523 5632 5400 4275 24 20 0 chr9 13651939 13652438 -104210189 + L1PA3 LINE L1 5641 6152 -3 29 28 0 0 chr9 13654089 13654125 -104208502 + AT_rich Low_complexity Low_complexity 1 36 0 427 319 17 21 chr9 13654727 13654968 -104207659 + MER112 DNA MER1_type 20 259 -1 23 0 0 0 chr9 13655149 13655172 -104207455 + AT_rich Low_complexity Low_complexity 1 23 0 297 289 87 13 chr9 13655188 13655347 -104207280 - MIR SINE MIR -63 145 14 290 222 79 0 chr9 13656832 13656895 -104205732 + L2 LINE L2 3203 3270 -2 582 149 11 0 chr9 13657648 13657735 -104204892 - AluJo SINE Alu -23 289 202 279 211 0 92 chr9 13657735 13657811 -104204816 - AluJo SINE Alu -148 154 86 22 35 0 0 chr9 13657877 13657906 -104204721 + AT_rich Low_complexity Low_complexity 1 29 0 259 282 10 58 chr9 13658130 13658233 -104204394 + MIR SINE MIR 97 194 -68 1626 297 74 5 chr9 13658257 13658952 -104203675 - L2 LINE L2 -8 3305 2547 2987 99 30 7 chr9 13658953 13659387 -104203240 - MLT2A1 LTR ERVL 0 444 1 1450 70 0 0 chr9 13659387 13659586 -104203041 - HERVL-A1 LTR ERVL 0 5654 5456 284 122 0 0 chr9 13659586 13659627 -104203000 - MLT2A1 LTR ERVL -403 41 1 1679 282 124 17 chr9 13659628 13660383 -104202244 - L2 LINE L2 -765 2549 1714 1232 242 105 44 chr9 13660396 13660872 -104201755 + MLT1H LTR MaLR 14 518 -31 470 258 96 39 chr9 13660931 13661160 -104201467 - L2 LINE L2 -1607 1707 1466 1792 148 13 17 chr9 13661785 13662083 -104200544 - AluSx SINE Alu -15 297 1 701 297 10 0 chr9 13663116 13663311 -104199316 + L1MCc LINE L1 280 476 -5947 900 283 30 17 chr9 13663787 13664087 -104198540 + L1MCc LINE L1 825 1128 -5295 490 223 16 8 chr9 13664084 13664205 -104198422 + L1ME1 LINE L1 4928 5049 -1097 * 2752 231 41 37 chr9 13664234 13665046 -104197581 + L1ME1 LINE L1 5349 6163 -3 25 51 0 0 chr9 13666329 13666368 -104196259 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr9 13666651 13666674 -104195953 + AT_rich Low_complexity Low_complexity 1 23 0 465 274 75 44 chr9 13666778 13667191 -104195436 + L1ME4a LINE L1 5694 6119 -2 935 247 57 4 chr9 13667610 13667837 -104194790 - MIR SINE MIR -21 241 3 326 160 0 13 chr9 13667885 13667960 -104194667 + (TA)n Simple_repeat Simple_repeat 2 75 0 236 221 50 0 chr9 13667960 13668047 -104194580 + L1MC3 LINE L1 6572 6646 -1139 1983 136 7 3 chr9 13668047 13668348 -104194279 - AluSx SINE Alu -10 302 1 22 0 0 0 chr9 13668351 13668373 -104194254 + AT_rich Low_complexity Low_complexity 1 22 0 2139 118 3 0 chr9 13668380 13668677 -104193950 + AluSx SINE Alu 1 298 -14 2159 112 7 3 chr9 13669162 13669466 -104193161 - AluSx SINE Alu -3 309 5 1783 169 7 10 chr9 13669874 13670159 -104192468 + AluJb SINE Alu 1 285 -23 240 59 0 0 chr9 13670159 13670193 -104192434 + (CAAT)n Simple_repeat Simple_repeat 2 35 0 216 260 13 26 chr9 13671997 13672074 -104190553 + A-rich Low_complexity Low_complexity 3 78 0 299 200 15 0 chr9 13672544 13672609 -104190018 - MLT1E2 LTR MaLR -2 624 559 2021 66 0 8 chr9 13673048 13673306 -104189321 + AluY SINE Alu 53 308 -3 1994 219 92 43 chr9 13673532 13674094 -104188533 - MLT1G1 LTR MaLR 0 595 6 1618 170 12 49 chr9 13676377 13676701 -104185926 - AluJo SINE Alu 0 312 1 21 0 0 0 chr9 13677863 13677884 -104184743 + AT_rich Low_complexity Low_complexity 1 21 0 2240 109 0 0 chr9 13677959 13678261 -104184366 - AluSx SINE Alu 0 312 11 267 276 69 102 chr9 13679566 13679812 -104182815 - MLT1K LTR MaLR -168 420 183 328 298 97 32 chr9 13679920 13680044 -104182583 - L2 LINE L2 0 3272 3141 1089 163 36 5 chr9 13680231 13680427 -104182200 + MER6B DNA MER2_type 9 210 0 323 288 118 66 chr9 13680442 13680609 -104182018 - MIR SINE MIR -37 225 43 1754 184 38 70 chr9 13680609 13681055 -104181572 - MSTB1 LTR MaLR 0 432 1 323 288 118 66 chr9 13681055 13681099 -104181528 - MIR SINE MIR -219 43 3 2154 197 83 26 chr9 13681367 13682207 -104180420 - L1ME1 LINE L1 -313 5853 4972 1303 239 28 0 chr9 13682199 13682517 -104180110 + L1ME1 LINE L1 4649 4975 -1171 * 269 202 48 73 chr9 13683065 13683109 -104179518 - L1ME LINE L1 -536 5634 5590 1737 211 46 30 chr9 13683109 13683569 -104179058 - MLT1C LTR MaLR 0 467 1 269 202 48 73 chr9 13683569 13683648 -104178979 - L1ME LINE L1 -580 5590 5514 300 325 12 6 chr9 13683718 13683887 -104178740 - L1P LINE L1 -727 5424 5255 233 310 0 0 chr9 13684078 13684149 -104178478 + (CA)n Simple_repeat Simple_repeat 1 71 0 256 306 0 10 chr9 13684755 13684853 -104177774 - MLT1I LTR MaLR -8 401 305 368 258 45 15 chr9 13684976 13685108 -104177519 - MLT1I LTR MaLR -271 138 3 1290 193 146 71 chr9 13686241 13686708 -104175919 - MLT1D LTR MaLR -3 502 1 4846 181 14 11 chr9 13687714 13688829 -104173798 - L1MB1 LINE L1 0 6168 5049 1949 169 66 27 chr9 13689645 13689742 -104172885 + L1MA9 LINE L1 5684 5776 -536 276 30 0 0 chr9 13689742 13689775 -104172852 + (CA)n Simple_repeat Simple_repeat 2 34 0 1949 169 66 27 chr9 13689775 13690116 -104172511 + L1MA9 LINE L1 5776 6139 -173 974 164 6 6 chr9 13691685 13691868 -104170759 + L1MA9 LINE L1 6130 6312 0 2055 108 29 0 chr9 13693483 13693761 -104168866 - AluSx SINE Alu -26 286 1 199 355 82 0 chr9 13694173 13694283 -104168344 + L2 LINE L2 3149 3267 -5 706 222 17 0 chr9 13694451 13694627 -104168000 + L1 LINE L1 4472 4650 -1496 3698 125 24 13 chr9 13694628 13695242 -104167385 + L1PA16 LINE L1 5533 6153 -13 739 144 0 0 chr9 13695260 13695371 -104167256 + FLAM_C SINE Alu 1 111 -32 267 93 0 0 chr9 13695372 13695415 -104167212 + (GA)n Simple_repeat Simple_repeat 2 44 0 474 296 17 47 chr9 13695482 13695654 -104166973 - L2 LINE L2 0 3313 3147 651 279 98 41 chr9 13696051 13696367 -104166260 - L2 LINE L2 -171 3142 2809 28 29 0 0 chr9 13698045 13698080 -104164547 + AT_rich Low_complexity Low_complexity 1 35 0 30 0 0 0 chr9 13698310 13698340 -104164287 + AT_rich Low_complexity Low_complexity 1 30 0 316 329 95 30 chr9 13698346 13698577 -104164050 - L2 LINE L2 -43 3270 3025 325 198 25 12 chr9 13698719 13698800 -104163827 - MER103 DNA DNA -41 125 44 189 351 119 22 chr9 13699092 13699226 -104163401 - L2 LINE L2 -607 2707 2561 283 60 16 67 chr9 13699756 13700006 -104162621 + AluY SINE Alu 1 300 -1 293 231 0 0 chr9 13700267 13700332 -104162295 + MIR SINE MIR 59 123 -139 2141 123 0 3 chr9 13700332 13700641 -104161986 - AluSx SINE Alu -3 309 2 2135 110 0 3 chr9 13701654 13701944 -104160683 - AluSg SINE Alu -21 289 1 320 254 30 60 chr9 13702328 13702462 -104160165 + L2 LINE L2 3143 3272 0 197 242 0 48 chr9 13702505 13702567 -104160060 + MIR SINE MIR 191 249 -13 * 242 146 42 0 chr9 13702535 13702583 -104160044 + L2 LINE L2 3263 3312 -1 258 111 89 0 chr9 13702836 13702881 -104159746 + L2 LINE L2 3264 3312 -1 1082 159 10 20 chr9 13703698 13703893 -104158734 + AluJb SINE Alu 120 312 0 1666 247 62 14 chr9 13704002 13704565 -104158062 - L1ME2 LINE L1 -16 6148 5559 1549 203 49 49 chr9 13704570 13705023 -104157604 - MLT1C LTR MaLR -8 459 7 1196 233 62 68 chr9 13705028 13705399 -104157228 - L1ME2 LINE L1 -597 5567 5195 2065 129 6 10 chr9 13705399 13705710 -104156917 - AluSx SINE Alu 0 312 3 1196 233 62 68 chr9 13705710 13706346 -104156281 - L1ME2 LINE L1 -969 5195 4575 40601 35 22 1 chr9 13706608 13712634 -104149993 + L1PA2 LINE L1 1 6154 -1 31 26 0 0 chr9 13712801 13712839 -104149788 + AT_rich Low_complexity Low_complexity 1 38 0 914 182 17 6 chr9 13714065 13714241 -104148386 - MER45A DNA AcHobo 0 178 1 203 326 58 23 chr9 13714869 13714955 -104147672 - L2 LINE L2 -4 3309 3221 285 307 223 5 chr9 13715050 13715252 -104147375 - MIR SINE MIR -16 246 1 266 341 116 51 chr9 13715438 13715852 -104146775 - L2 LINE L2 -402 2912 2472 1931 167 0 3 chr9 13715990 13716301 -104146326 - AluJo SINE Alu -2 310 1 547 199 0 15 chr9 13717300 13717436 -104145191 + (CA)n Simple_repeat Simple_repeat 2 135 0 360 43 0 0 chr9 13720484 13720530 -104142097 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 293 271 41 16 chr9 13721267 13721389 -104141238 - LTR16B LTR ERVL -74 390 266 23 33 0 0 chr9 13722596 13722626 -104140001 + AT_rich Low_complexity Low_complexity 1 30 0 229 263 53 0 chr9 13722930 13722987 -104139640 - MIR SINE MIR -67 141 82 1544 215 26 26 chr9 13723010 13723391 -104139236 + MLT2D LTR ERVL 22 402 -12 417 86 0 0 chr9 13724997 13725055 -104137572 + (TG)n Simple_repeat Simple_repeat 2 59 0 1753 184 52 0 chr9 13725485 13725832 -104136795 - MLT1A1 LTR MaLR 0 365 1 1144 242 38 63 chr9 13726051 13726079 -104136548 + L1MC4 LINE L1 7549 7576 -466 2206 129 7 0 chr9 13726079 13726389 -104136238 + AluSx SINE Alu 1 312 0 1144 242 38 63 chr9 13726389 13726865 -104135762 + L1MC4 LINE L1 7576 8040 -2 200 149 0 90 chr9 13727088 13727155 -104135472 + (TAAAAA)n Simple_repeat Simple_repeat 3 63 0 282 304 10 20 chr9 13727172 13727274 -104135353 + MIR SINE MIR 53 153 -109 1913 112 0 45 chr9 13727756 13728043 -104134584 - AluSx SINE Alu -24 288 15 208 278 241 9 chr9 13728779 13728887 -104133740 - MIR3 SINE MIR -53 155 23 277 304 65 11 chr9 13729160 13729252 -104133375 - L2 LINE L2 -5 3267 3171 296 426 7 7 chr9 13730918 13731066 -104131561 + MIR3 SINE MIR 29 176 -32 1026 168 41 0 chr9 13731606 13731802 -104130825 + MER3 DNA MER1_type 6 209 0 331 120 0 0 chr9 13731759 13731809 -104130818 - MER3 DNA MER1_type -119 90 41 * 552 294 0 19 chr9 13731859 13732019 -104130608 - MER5B DNA MER1_type -21 157 1 335 345 108 14 chr9 13732326 13732474 -104130153 + L2 LINE L2 3107 3268 -4 318 253 11 11 chr9 13732595 13732682 -104129945 + (TG)n Simple_repeat Simple_repeat 1 87 0 339 293 61 0 chr9 13733675 13733774 -104128853 - MIR3 SINE MIR -9 199 95 309 211 45 15 chr9 13734227 13734360 -104128267 + L1M2 LINE L1 2682 2818 -4031 196 243 0 0 chr9 13734367 13734404 -104128223 - MIR SINE MIR -150 112 76 38 39 0 0 chr9 13735201 13735253 -104127374 + AT_rich Low_complexity Low_complexity 1 52 0 438 20 0 0 chr9 13735405 13735456 -104127171 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 261 0 0 0 chr9 13735858 13735887 -104126740 + (CA)n Simple_repeat Simple_repeat 2 30 0 29 47 0 0 chr9 13736032 13736075 -104126552 + AT_rich Low_complexity Low_complexity 1 43 0 3360 202 59 26 chr9 13736086 13736629 -104125998 + L1MC2 LINE L1 4812 5336 -1008 1759 181 3 16 chr9 13736629 13736932 -104125695 + AluJb SINE Alu 1 299 -13 3360 202 59 26 chr9 13736932 13737667 -104124960 + L1MC2 LINE L1 5336 6222 -122 2508 56 13 3 chr9 13737669 13737975 -104124652 + AluY SINE Alu 1 309 -2 21 0 0 0 chr9 13738110 13738131 -104124496 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr9 13738875 13738910 -104123717 + AT_rich Low_complexity Low_complexity 1 35 0 793 284 132 84 chr9 13739402 13740067 -104122560 + L1MEc LINE L1 39 671 -5725 2277 102 0 3 chr9 13740067 13740362 -104122265 + AluSq SINE Alu 1 294 -19 793 284 132 84 chr9 13740362 13741092 -104121535 + L1MEc LINE L1 671 1501 -4895 693 95 11 0 chr9 13741139 13741234 -104121393 - MLT1B LTR MaLR 0 390 295 246 113 75 19 chr9 13741272 13741325 -104121302 - MLT2B1 LTR ERVL 0 520 465 1460 192 112 33 chr9 13741445 13741810 -104120817 - MLT2B1 LTR ERVL -126 394 1 1134 200 26 4 chr9 13741810 13742037 -104120590 - MLT1B LTR MaLR -158 232 1 563 256 73 18 chr9 13742037 13742256 -104120371 + L1MEc LINE L1 1541 1771 -4625 * 2114 291 62 9 chr9 13742250 13742944 -104119683 + L1ME1 LINE L1 25 755 -5641 1130 123 5 37 chr9 13742948 13743135 -104119492 + AluSg/x SINE Alu 117 297 -12 356 170 29 164 chr9 13743137 13743214 -104119413 + L1ME1 LINE L1 764 807 -5589 1556 182 10 40 chr9 13743214 13743510 -104119117 + AluJo SINE Alu 1 287 -25 356 170 29 164 chr9 13743510 13743603 -104119024 + L1ME1 LINE L1 807 911 -5485 1783 286 83 9 chr9 13743664 13744461 -104118166 + L1ME1 LINE L1 1248 2103 -4293 678 204 3 28 chr9 13744475 13744698 -104117929 + MLT1A1 LTR MaLR 1 363 -2 1817 241 39 30 chr9 13744699 13745472 -104117155 + L1ME1 LINE L1 2118 2854 -3361 7001 150 20 16 chr9 13745472 13745752 -104116875 - Tigger3b DNA MER2_type -1797 1231 954 3030 127 79 16 chr9 13745752 13746248 -104116379 - MER1A DNA MER1_type 0 527 1 7001 150 20 16 chr9 13746248 13747192 -104115435 - Tigger3b DNA MER2_type -2074 954 2 6175 224 81 59 chr9 13747193 13747595 -104115032 + L1ME1 LINE L1 2853 3244 -2991 2043 113 17 10 chr9 13747595 13747895 -104114732 + AluSc SINE Alu 1 302 -7 6175 224 81 59 chr9 13747895 13748382 -104114245 + L1ME1 LINE L1 3244 3719 -2516 1677 168 6 56 chr9 13748382 13748704 -104113923 + AluJo SINE Alu 1 306 -6 6175 224 81 59 chr9 13748704 13750652 -104111975 + L1ME1 LINE L1 3719 5789 -446 2599 31 0 0 chr9 13750652 13750946 -104111681 - AluY SINE Alu -17 294 1 6175 224 81 59 chr9 13750946 13751394 -104111233 + L1ME1 LINE L1 5789 6225 -10 319 313 22 30 chr9 13751919 13752053 -104110574 + MIR SINE MIR 15 147 -115 9026 125 32 32 chr9 13753225 13753700 -104108927 + Tigger1 DNA MER2_type 1 475 -1943 936 177 12 0 chr9 13753700 13753864 -104108763 + FAM SINE Alu 3 168 -7 9026 125 32 32 chr9 13753864 13754900 -104107727 + Tigger1 DNA MER2_type 475 1511 -907 1123 129 0 0 chr9 13754900 13755063 -104107564 - AluSg/x SINE Alu 0 312 150 5640 132 21 9 chr9 13755063 13755973 -104106654 + Tigger1 DNA MER2_type 1498 2418 0 195 42 0 0 chr9 13756533 13756557 -104106070 + (TTTC)n Simple_repeat Simple_repeat 2 25 0 2140 46 32 18 chr9 13756559 13756839 -104105788 - AluY SINE Alu -27 284 1 247 261 315 0 chr9 13759098 13759190 -104103437 + MIR3 SINE MIR 40 160 -48 210 250 70 60 chr9 13760078 13760178 -104102449 - MIR SINE MIR 0 262 162 * 232 390 71 18 chr9 13760164 13760333 -104102294 - L2 LINE L2 -225 3047 2870 2133 142 0 0 chr9 13761066 13761376 -104101251 + AluSx SINE Alu 1 310 -2 333 203 81 25 chr9 13761445 13761569 -104101058 - MER34C LTR ERV1 0 585 413 668 252 48 60 chr9 13761590 13761912 -104100715 - MER34 LTR ERV1 -184 523 1 205 260 0 0 chr9 13765535 13765585 -104097042 + CT-rich Low_complexity Low_complexity 1 50 0 36 53 0 0 chr9 13765765 13765822 -104096805 + AT_rich Low_complexity Low_complexity 1 57 0 312 286 143 19 chr9 13767600 13767761 -104094866 - MIR SINE MIR -70 192 12 3253 124 49 5 chr9 13767927 13768512 -104094115 + MER4B LTR ERV1 1 779 0 1345 143 27 82 chr9 13768602 13768896 -104093731 + AluJb SINE Alu 29 306 -6 892 255 52 15 chr9 13770274 13770600 -104092027 - MER113 DNA MER1_type? -178 343 6 211 241 76 25 chr9 13770729 13770808 -104091819 - MIR SINE MIR -8 254 172 2285 90 7 3 chr9 13771914 13772214 -104090413 - AluY SINE Alu -10 301 1 459 0 0 0 chr9 13772330 13772381 -104090246 + (TG)n Simple_repeat Simple_repeat 2 52 0 1497 140 93 50 chr9 13772829 13773107 -104089520 - AluSq SINE Alu -16 297 8 1166 248 129 7 chr9 13773134 13773537 -104089090 - MLT1C LTR MaLR -6 461 10 258 325 163 6 chr9 13773869 13774029 -104088598 - MIR3 SINE MIR 0 208 24 21 36 0 0 chr9 13775017 13775045 -104087582 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr9 13776533 13776557 -104086070 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr9 13777204 13777226 -104085401 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 13777810 13777831 -104084796 + AT_rich Low_complexity Low_complexity 1 21 0 889 170 144 5 chr9 13779837 13780031 -104082596 + MER58A DNA MER1_type 1 221 -3 434 254 66 57 chr9 13781145 13781373 -104081254 + MIR SINE MIR 20 249 -13 21 0 0 0 chr9 13783313 13783334 -104079293 + AT_rich Low_complexity Low_complexity 1 21 0 2040 117 4 4 chr9 13783344 13783665 -104078962 + AluSg SINE Alu 1 321 0 2274 62 3 24 chr9 13784407 13784698 -104077929 + AluY SINE Alu 20 304 -7 304 277 184 15 chr9 13784950 13785156 -104077471 + MIR SINE MIR 14 254 -8 1385 127 142 70 chr9 13785658 13785974 -104076653 - MER44D DNA MER2_type 0 609 1 2184 65 0 0 chr9 13786008 13786269 -104076358 + AluY SINE Alu 35 295 -16 2371 91 3 0 chr9 13786568 13786866 -104075761 - AluSp SINE Alu -12 301 3 1576 162 103 4 chr9 13787837 13788109 -104074518 - AluJb SINE Alu -13 299 1 211 282 42 42 chr9 13788658 13788729 -104073898 - MIR SINE MIR -172 90 20 384 324 39 103 chr9 13789909 13790239 -104072388 + L2 LINE L2 2945 3253 -19 2178 119 14 0 chr9 13791248 13791541 -104071086 - AluSx SINE Alu -15 297 1 22 35 0 0 chr9 13792169 13792198 -104070429 + AT_rich Low_complexity Low_complexity 1 29 0 320 208 52 26 chr9 13793483 13793560 -104069067 - MIR SINE MIR -92 170 92 317 321 109 7 chr9 13793642 13793779 -104068848 - MIR3 SINE MIR -39 169 19 206 378 0 12 chr9 13796549 13796631 -104065996 + MIR SINE MIR 61 141 -121 1427 219 104 9 chr9 13796862 13797351 -104065276 + MLT1F LTR MaLR 5 534 -8 471 336 76 53 chr9 13797353 13797788 -104064839 + MLT1K LTR MaLR 136 580 -8 2227 102 0 0 chr9 13797905 13798242 -104064385 + AluSx SINE Alu 1 312 0 612 146 184 0 chr9 13798472 13798575 -104064052 - FLAM_A SINE Alu -11 122 1 23 33 0 0 chr9 13798968 13798998 -104063629 + AT_rich Low_complexity Low_complexity 1 30 0 231 222 22 0 chr9 13799643 13799688 -104062939 + MIR SINE MIR 30 75 -133 295 252 99 36 chr9 13800077 13800188 -104062439 - MIR SINE MIR -41 221 104 838 173 78 6 chr9 13800423 13800602 -104062025 + LTR47A LTR ERVL 261 452 0 272 256 122 0 chr9 13800967 13801057 -104061570 - MIR SINE MIR -65 197 97 586 245 48 48 chr9 13801423 13801611 -104061016 - MIR SINE MIR -73 189 2 203 318 30 15 chr9 13801631 13801697 -104060930 - L2 LINE L2 -5 3267 3201 774 215 62 23 chr9 13802305 13802482 -104060145 - MER5A DNA MER1_type 0 189 6 217 178 56 22 chr9 13802713 13802803 -104059824 + (TTATA)n Simple_repeat Simple_repeat 4 96 0 243 301 0 27 chr9 13803965 13804038 -104058589 + L2 LINE L2 3238 3308 -5 2297 92 13 3 chr9 13805045 13805350 -104057277 - AluSc SINE Alu -1 308 1 29 28 0 0 chr9 13805623 13805659 -104056968 + AT_rich Low_complexity Low_complexity 1 36 0 314 165 82 57 chr9 13807504 13807624 -104055003 + MLT1F LTR MaLR 261 413 -175 283 127 175 0 chr9 13807646 13807709 -104054918 + MLT1F LTR MaLR 517 590 0 279 215 152 0 chr9 13808362 13808441 -104054186 - MIR SINE MIR -62 146 56 23 0 0 0 chr9 13809009 13809032 -104053595 + AT_rich Low_complexity Low_complexity 1 23 0 291 54 0 0 chr9 13809107 13809144 -104053483 + (TA)n Simple_repeat Simple_repeat 1 37 0 219 150 0 0 chr9 13809381 13809421 -104053206 + (TA)n Simple_repeat Simple_repeat 2 41 0 22 0 0 0 chr9 13809710 13809732 -104052895 + AT_rich Low_complexity Low_complexity 1 22 0 334 86 224 0 chr9 13810035 13810093 -104052534 + MADE1 DNA Mariner 10 80 0 246 333 106 72 chr9 13810095 13810275 -104052352 - MIR3 SINE MIR -3 205 20 24 77 0 0 chr9 13810456 13810508 -104052119 + AT_rich Low_complexity Low_complexity 1 52 0 198 0 0 0 chr9 13811123 13811145 -104051482 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 25 51 0 0 chr9 13813000 13813039 -104049588 + AT_rich Low_complexity Low_complexity 1 39 0 21 71 0 0 chr9 13815342 13815384 -104047243 + AT_rich Low_complexity Low_complexity 1 42 0 293 337 41 0 chr9 13818508 13818606 -104044021 + L2 LINE L2 3171 3272 0 201 250 0 0 chr9 13818705 13818745 -104043882 + (CA)n Simple_repeat Simple_repeat 1 40 0 242 100 0 0 chr9 13819391 13819431 -104043196 + L1PA3 LINE L1 6113 6152 -3 21 0 0 0 chr9 13819431 13819452 -104043175 + AT_rich Low_complexity Low_complexity 1 21 0 3798 191 73 12 chr9 13819695 13820126 -104042501 + L1MB3 LINE L1 5033 5436 -747 189 0 0 0 chr9 13820126 13820147 -104042480 + (CA)n Simple_repeat Simple_repeat 2 22 0 3798 191 73 12 chr9 13820147 13820805 -104041822 + L1MB3 LINE L1 5436 6175 -8 505 299 0 51 chr9 13821216 13821276 -104041351 + L2 LINE L2 2788 2849 -465 2434 111 28 17 chr9 13821276 13821636 -104040991 + THE1B LTR MaLR 1 364 0 505 299 0 51 chr9 13821636 13821772 -104040855 + L2 LINE L2 2849 2974 -340 758 149 5 155 chr9 13822420 13822614 -104040013 - FRAM SINE Alu -4 172 8 218 217 0 0 chr9 13822783 13822829 -104039798 + A-rich Low_complexity Low_complexity 1 46 0 609 273 24 18 chr9 13822906 13823071 -104039556 - MIR SINE MIR 0 262 97 639 218 77 101 chr9 13823387 13823635 -104038992 + MIR SINE MIR 21 262 0 213 189 0 0 chr9 13823640 13823677 -104038950 + (TGG)n Simple_repeat Simple_repeat 1 37 0 427 278 67 103 chr9 13823797 13823921 -104038706 + L1MC4a LINE L1 5440 5567 -2241 2174 115 0 3 chr9 13823921 13824208 -104038419 + AluSc SINE Alu 1 286 -23 427 278 67 103 chr9 13824208 13824590 -104038037 + L1MC4a LINE L1 5567 5928 -1880 456 241 161 12 chr9 13825100 13825262 -104037365 - MIR SINE MIR -25 237 52 2182 116 33 28 chr9 13825302 13825664 -104036963 - THE1B LTR MaLR 0 364 1 27 0 0 0 chr9 13826025 13826052 -104036575 + AT_rich Low_complexity Low_complexity 1 27 0 219 36 0 0 chr9 13826609 13826637 -104035990 + (CA)n Simple_repeat Simple_repeat 2 29 0 309 281 215 61 chr9 13828106 13828334 -104034293 - L3 LINE CR1 -22 1555 1293 228 405 0 0 chr9 13829054 13829133 -104033494 - MIR SINE MIR -182 80 2 213 274 129 0 chr9 13829211 13829273 -104033354 + MIR SINE MIR 45 114 -148 1887 139 49 9 chr9 13829687 13829815 -104032812 - MER2 DNA MER2_type -7 338 217 360 0 0 0 chr9 13829815 13829855 -104032772 + (TA)n Simple_repeat Simple_repeat 1 40 0 1887 139 49 9 chr9 13829855 13830050 -104032577 - MER2 DNA MER2_type -128 217 2 2169 111 0 10 chr9 13830274 13830571 -104032056 + AluSq SINE Alu 3 296 -17 1787 184 3 3 chr9 13830971 13831270 -104031357 + AluJb SINE Alu 6 304 -8 36 23 0 0 chr9 13831445 13831488 -104031139 + AT_rich Low_complexity Low_complexity 1 43 0 308 281 0 0 chr9 13832430 13832494 -104030133 - L2 LINE L2 0 3272 3209 241 65 65 22 chr9 13836673 13836719 -104025908 - MARNA DNA Mariner -342 244 197 23 101 0 0 chr9 13837569 13837648 -104024979 + AT_rich Low_complexity Low_complexity 1 79 0 276 351 81 9 chr9 13837985 13838096 -104024531 - L2 LINE L2 0 3313 3195 982 349 37 44 chr9 13838198 13838900 -104023727 + L2 LINE L2 2261 2957 -357 22 35 0 0 chr9 13838993 13839022 -104023605 + AT_rich Low_complexity Low_complexity 1 29 0 421 301 75 20 chr9 13839996 13840195 -104022432 + MIR SINE MIR 48 257 -5 204 385 55 9 chr9 13840391 13840500 -104022127 + MIR SINE MIR 36 149 -113 2337 84 0 13 chr9 13841361 13841671 -104020956 - AluSq SINE Alu -7 306 1 2305 156 58 2 chr9 13841855 13842286 -104020341 + L1MB3 LINE L1 5727 6181 -2 326 231 22 0 chr9 13842287 13842378 -104020249 + L1M4 LINE L1 3849 3941 -2205 1939 127 7 10 chr9 13842405 13842705 -104019922 + AluSq SINE Alu 1 299 -14 216 234 0 0 chr9 13842799 13842846 -104019781 + L2 LINE L2 2689 2735 -579 366 216 142 27 chr9 13843434 13843582 -104019045 - MER103 DNA DNA -1 165 1 255 233 14 27 chr9 13846416 13846489 -104016138 + (CATATA)n Simple_repeat Simple_repeat 4 75 0 532 290 126 13 chr9 13846629 13846860 -104015767 + MIR SINE MIR 3 259 -3 708 79 89 0 chr9 13846972 13847073 -104015554 - AluY SINE Alu -186 125 16 1402 85 0 11 chr9 13847073 13847262 -104015365 + AluY SINE Alu 114 300 -11 556 254 130 14 chr9 13847708 13848078 -104014549 - L1M4 LINE L1 -881 5265 4853 28 29 0 0 chr9 13850363 13850398 -104012229 + AT_rich Low_complexity Low_complexity 1 35 0 457 234 49 6 chr9 13851541 13851721 -104010906 + L1M4 LINE L1 5272 5458 -712 233 393 51 8 chr9 13853755 13853872 -104008755 - MIR3 SINE MIR -28 180 59 26 0 0 0 chr9 13854718 13854744 -104007883 + AT_rich Low_complexity Low_complexity 1 26 0 223 212 35 35 chr9 13855396 13855481 -104007146 + GA-rich Low_complexity Low_complexity 1 85 0 26 50 0 0 chr9 13855652 13855692 -104006935 + AT_rich Low_complexity Low_complexity 1 40 0 1840 123 14 14 chr9 13857221 13857498 -104005129 + AluSx SINE Alu 1 277 -35 234 0 0 0 chr9 13857498 13857524 -104005103 + (CAAT)n Simple_repeat Simple_repeat 3 28 0 263 211 19 0 chr9 13859879 13859931 -104002696 + MIR SINE MIR 156 208 -54 293 271 12 35 chr9 13860713 13860798 -104001829 + MIR SINE MIR 111 193 -69 550 279 78 11 chr9 13860826 13861005 -104001622 - MIR SINE MIR -57 205 15 26 0 0 0 chr9 13861344 13861370 -104001257 + AT_rich Low_complexity Low_complexity 1 26 0 320 278 108 41 chr9 13861620 13861814 -104000813 + L1MC4a LINE L1 5866 6072 -1736 23 33 0 0 chr9 13861878 13861908 -104000719 + AT_rich Low_complexity Low_complexity 1 30 0 265 277 9 60 chr9 13862806 13862912 -103999715 - MIR3 SINE MIR -4 204 104 3052 55 15 7 chr9 13863308 13863711 -103998916 + L1PA8 LINE L1 5764 6169 -3 1796 160 0 0 chr9 13863991 13864296 -103998331 + AluJb SINE Alu 1 305 0 224 167 222 14 chr9 13864308 13864380 -103998247 + MIR SINE MIR 174 260 -2 22 0 0 0 chr9 13866145 13866167 -103996460 + AT_rich Low_complexity Low_complexity 1 22 0 293 176 0 0 chr9 13866226 13866277 -103996350 + L1MA5 LINE L1 6024 6074 -226 186 43 0 0 chr9 13866277 13866300 -103996327 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 400 231 135 0 chr9 13866305 13866409 -103996218 - FLAM_A SINE Alu -15 118 1 6110 139 36 10 chr9 13866461 13867715 -103994912 - L1MA4 LINE L1 -7 6497 5202 423 0 0 0 chr9 13867723 13867770 -103994857 + (TG)n Simple_repeat Simple_repeat 2 48 0 8414 220 43 67 chr9 13867782 13870319 -103992308 - L1MA4 LINE L1 -1396 4954 2478 1754 269 17 52 chr9 13870337 13871162 -103991465 - L1MA4 LINE L1 -4466 1885 1094 537 364 47 32 chr9 13871511 13872005 -103990622 - L1MA4 LINE L1 -5780 501 1 1197 96 0 30 chr9 13872008 13872205 -103990422 + L1MA5 LINE L1 6108 6298 -2 414 0 0 0 chr9 13872762 13872808 -103989819 + (CA)n Simple_repeat Simple_repeat 1 46 0 192 77 0 0 chr9 13872808 13872834 -103989793 + (GA)n Simple_repeat Simple_repeat 1 26 0 815 159 8 0 chr9 13873339 13873465 -103989162 + AluSq/x SINE Alu 1 127 -185 23 33 0 0 chr9 13873686 13873716 -103988911 + AT_rich Low_complexity Low_complexity 1 30 0 222 234 33 174 chr9 13875310 13875421 -103987206 + MER5B DNA MER1_type 18 94 -84 248 290 21 65 chr9 13875313 13875406 -103987221 - MER5A DNA MER1_type -22 167 79 1445 203 17 30 chr9 13875421 13875588 -103987039 - AluJo SINE Alu -11 301 138 2263 77 31 0 chr9 13875588 13875875 -103986752 - AluSc SINE Alu -13 296 1 1445 203 17 30 chr9 13875875 13876008 -103986619 - AluJo SINE Alu -174 138 5 222 234 33 174 chr9 13876008 13876080 -103986547 + MER5B DNA MER1_type 94 175 -3 259 344 59 29 chr9 13876273 13876546 -103986081 + L2 LINE L2 2691 2971 -343 1776 169 0 25 chr9 13877194 13877508 -103985119 + AluJb SINE Alu 1 306 -6 185 224 19 19 chr9 13877615 13877722 -103984905 + (TA)n Simple_repeat Simple_repeat 2 108 0 326 301 62 70 chr9 13878791 13879208 -103983419 + L1M3c LINE L1 1195 1529 -1042 582 154 137 0 chr9 13881724 13881841 -103980786 + FLAM_C SINE Alu 1 133 0 3322 160 7 3 chr9 13883058 13883628 -103978999 + L1MB8 LINE L1 5598 6169 -9 2005 143 55 18 chr9 13883996 13884381 -103978246 - L1MB2 LINE L1 -1 6170 5772 237 233 0 0 chr9 13884381 13884471 -103978156 + (TA)n Simple_repeat Simple_repeat 2 91 0 483 172 86 0 chr9 13884475 13884568 -103978059 - L1MB2 LINE L1 -390 5793 5693 239 173 39 19 chr9 13884735 13884787 -103977840 + MER103 DNA DNA 17 69 -97 1065 177 5 30 chr9 13884789 13884987 -103977640 - AluJo SINE Alu 0 312 120 206 32 32 0 chr9 13886379 13886410 -103976217 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 221 250 79 0 chr9 13886798 13886874 -103975753 - MIR SINE MIR -6 256 175 598 197 153 33 chr9 13889416 13889599 -103973028 + MER3 DNA MER1_type 5 209 0 23 33 0 0 chr9 13890673 13890703 -103971924 + AT_rich Low_complexity Low_complexity 1 30 0 294 200 0 50 chr9 13891852 13891912 -103970715 - MER2 DNA MER2_type 0 345 289 1196 170 24 15 chr9 13892093 13892299 -103970328 - MER2 DNA MER2_type -136 209 2 1737 168 7 10 chr9 13892844 13893136 -103969491 + AluJo SINE Alu 1 291 -21 344 289 7 47 chr9 13893771 13893920 -103968707 + L1ME LINE L1 5599 5741 -380 857 117 64 18 chr9 13894234 13894405 -103968222 + Tigger3(Golem) DNA MER2_type 2434 2612 -417 2246 136 53 5 chr9 13894517 13894893 -103967734 + Tigger3(Golem) DNA MER2_type 2596 2989 -40 692 250 96 17 chr9 13894892 13895132 -103967495 + MER77 LTR ERV1 342 600 -5 * 226 204 20 122 chr9 13895200 13895298 -103967329 + MER21A LTR ERV1 680 767 -164 577 311 152 35 chr9 13895517 13895944 -103966683 + L2 LINE L2 2828 3304 -9 348 285 65 8 chr9 13898331 13898454 -103964173 - MLT1E LTR MaLR -457 136 7 312 293 58 16 chr9 13898457 13898648 -103963979 + L1M2 LINE L1 2285 2483 -4366 284 48 24 0 chr9 13898658 13898700 -103963927 + (CA)n Simple_repeat Simple_repeat 1 43 0 232 310 32 25 chr9 13898878 13899036 -103963591 + L1ME1 LINE L1 1892 2050 -4346 * 2386 247 90 15 chr9 13899031 13899806 -103962821 + L1ME1 LINE L1 5305 6144 -91 963 264 214 48 chr9 13899869 13900378 -103962249 + L1ME3 LINE L1 2982 3405 -2810 1781 151 40 4 chr9 13900378 13900656 -103961971 + AluSx SINE Alu 1 288 -24 963 264 214 48 chr9 13900656 13901394 -103961233 + L1ME3 LINE L1 3405 4436 -1779 1948 264 62 39 chr9 13901437 13902714 -103959913 + L1ME3 LINE L1 4873 6184 -47 24 53 0 0 chr9 13903125 13903163 -103959464 + AT_rich Low_complexity Low_complexity 1 38 0 281 278 122 0 chr9 13904466 13904556 -103958071 - L2 LINE L2 -1 3312 3212 480 117 0 0 chr9 13905268 13905345 -103957282 + (TG)n Simple_repeat Simple_repeat 2 78 0 2360 80 6 16 chr9 13905362 13905675 -103956952 - AluSp SINE Alu -3 310 1 3718 200 109 29 chr9 13906165 13906255 -103956372 + Charlie1 DNA MER1_type 1584 1665 -1096 1809 132 20 16 chr9 13906255 13906558 -103956069 + AluJb SINE Alu 1 304 -8 3718 200 109 29 chr9 13906558 13907110 -103955517 + Charlie1 DNA MER1_type 1665 2171 -590 2949 162 32 50 chr9 13907110 13907733 -103954894 + LTR9 LTR ERV1 1 612 0 3718 200 109 29 chr9 13907733 13908169 -103954458 + Charlie1 DNA MER1_type 2171 2750 -11 523 235 38 8 chr9 13908440 13908572 -103954055 + MIR SINE MIR 102 237 -25 207 0 0 0 chr9 13909675 13909698 -103952929 + (A)n Simple_repeat Simple_repeat 1 23 0 241 337 92 31 chr9 13909698 13909861 -103952766 + MIR SINE MIR 20 192 -70 1854 115 0 11 chr9 13911310 13911579 -103951048 - AluSx SINE Alu -2 310 45 878 238 9 48 chr9 13911864 13912091 -103950536 - MER20 DNA MER1_type 0 219 2 31 0 0 0 chr9 13914214 13914245 -103948382 + AT_rich Low_complexity Low_complexity 1 31 0 21 82 0 0 chr9 13914303 13914352 -103948275 + AT_rich Low_complexity Low_complexity 1 49 0 247 270 270 9 chr9 13914548 13914659 -103947968 + MIR3 SINE MIR 42 181 -27 2040 128 20 0 chr9 13915261 13915558 -103947069 + AluSx SINE Alu 2 304 -8 2328 87 0 3 chr9 13917039 13917339 -103945288 + AluSx SINE Alu 1 299 -13 2103 126 0 28 chr9 13917784 13918101 -103944526 + AluSx SINE Alu 5 312 0 306 0 0 0 chr9 13918199 13918233 -103944394 + (CA)n Simple_repeat Simple_repeat 1 34 0 190 207 17 52 chr9 13919855 13919913 -103942714 - L2 LINE L2 -81 3232 3177 2138 135 0 0 chr9 13919941 13920252 -103942375 + AluSx SINE Alu 1 311 -1 184 291 51 13 chr9 13920983 13921062 -103941565 + MIR SINE MIR 48 129 -133 2263 83 0 13 chr9 13921380 13921680 -103940947 + AluSc SINE Alu 1 296 -13 1091 126 126 6 chr9 13921683 13921865 -103940762 + AluSx SINE Alu 1 204 -108 280 296 233 0 chr9 13921942 13922094 -103940533 + MIR SINE MIR 19 203 -59 698 255 142 9 chr9 13922937 13923149 -103939478 - MIR SINE MIR -21 241 2 1026 118 14 91 chr9 13923554 13923684 -103938943 + Tigger7 DNA MER2_type 2384 2492 -95 14144 140 29 6 chr9 13923684 13926048 -103936579 - Tigger1 DNA MER2_type 0 2418 1 1026 118 14 91 chr9 13926048 13926138 -103936489 + Tigger7 DNA MER2_type 2492 2587 0 344 297 31 23 chr9 13926411 13926539 -103936088 - MIR SINE MIR -120 142 14 802 119 108 34 chr9 13926836 13927012 -103935615 + MER53 DNA DNA 1 189 0 441 81 0 0 chr9 13928054 13928116 -103934511 + AluSc SINE Alu 156 217 -92 267 170 0 19 chr9 13928137 13928190 -103934437 + MER53 DNA DNA 138 189 0 324 65 0 0 chr9 13928322 13928368 -103934259 - AluSg/x SINE Alu -81 221 176 408 149 11 11 chr9 13928368 13928455 -103934172 + AluS SINE Alu 220 306 -3 234 343 87 48 chr9 13928639 13928927 -103933700 - L2 LINE L2 -183 3089 2743 2047 120 3 26 chr9 13928927 13929235 -103933392 - AluSx SINE Alu -11 301 1 234 343 87 48 chr9 13929235 13929386 -103933241 - L2 LINE L2 -529 2743 2599 1007 228 65 54 chr9 13929613 13929999 -103932628 + MLT1B LTR MaLR 1 390 0 1501 177 3 57 chr9 13930854 13931171 -103931456 + AluJo SINE Alu 11 310 -2 1559 159 55 14 chr9 13931275 13931564 -103931063 + AluJo SINE Alu 1 301 -11 418 280 58 40 chr9 13931659 13931884 -103930743 + L1MDa LINE L1 2351 2579 -3961 30 0 0 0 chr9 13931933 13931963 -103930664 + AT_rich Low_complexity Low_complexity 1 30 0 607 237 65 38 chr9 13932185 13932371 -103930256 + L1MC5 LINE L1 7727 7917 -44 198 307 243 21 chr9 13933511 13933651 -103928976 - MIR3 SINE MIR -17 191 21 24 0 0 0 chr9 13933744 13933768 -103928859 + AT_rich Low_complexity Low_complexity 1 24 0 2010 124 3 0 chr9 13934395 13934686 -103927941 + AluSp SINE Alu 14 305 -8 306 292 124 7 chr9 13936411 13936548 -103926079 - MIR SINE MIR -48 214 62 23 0 0 0 chr9 13937242 13937265 -103925362 + AT_rich Low_complexity Low_complexity 1 23 0 391 172 103 9 chr9 13937443 13937559 -103925068 + MER69 DNA AcHobo 2400 2526 0 197 185 11 174 chr9 13938436 13938528 -103924099 + L2 LINE L2 3194 3270 -43 987 207 43 55 chr9 13939524 13939852 -103922775 + MER33 DNA MER1_type 1 324 0 21 36 0 0 chr9 13940214 13940242 -103922385 + AT_rich Low_complexity Low_complexity 1 28 0 463 209 49 80 chr9 13940411 13940574 -103922053 + MER34 LTR ERV1 3 160 -382 264 200 88 25 chr9 13940720 13940800 -103921827 + MER34 LTR ERV1 458 542 0 1338 208 47 29 chr9 13940873 13941253 -103921374 + L1ME1 LINE L1 5776 6162 -4 838 130 0 36 chr9 13941670 13941808 -103920819 + AluSq/x SINE Alu 1 133 -179 1967 155 42 11 chr9 13941984 13942338 -103920289 + MLT1A1 LTR MaLR 1 365 0 854 130 62 0 chr9 13942711 13942873 -103919754 - Charlie5 DNA MER1_type 0 2624 2453 21 82 0 0 chr9 13943272 13943321 -103919306 + AT_rich Low_complexity Low_complexity 1 49 0 24 0 0 0 chr9 13943613 13943637 -103918990 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr9 13943706 13943741 -103918886 + AT_rich Low_complexity Low_complexity 1 35 0 1909 148 89 3 chr9 13944267 13944626 -103918001 + MLT1B LTR MaLR 1 390 0 813 140 7 0 chr9 13944626 13944762 -103917865 + MLT1B-int LTR MaLR 1 137 -1234 205 306 0 20 chr9 13946342 13946440 -103916187 + GA-rich Low_complexity Low_complexity 2 97 0 2130 110 0 0 chr9 13946640 13946958 -103915669 - AluSx SINE Alu 0 312 1 246 62 0 0 chr9 13948656 13948688 -103913939 + (CCCCCA)n Simple_repeat Simple_repeat 1 32 0 29 28 0 0 chr9 13948718 13948754 -103913873 + GC_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr9 13949106 13949128 -103913499 + GC_rich Low_complexity Low_complexity 1 22 0 893 153 16 26 chr9 13949223 13949412 -103913215 - MER53 DNA DNA -1 188 2 420 217 114 39 chr9 13950014 13950194 -103912433 - MER69 DNA AcHobo -19 2507 1 300 308 220 23 chr9 13950200 13950505 -103912122 + L2 LINE L2 2061 2425 -889 296 340 99 21 chr9 13950590 13950731 -103911896 + L2 LINE L2 3096 3247 -25 475 328 0 16 chr9 13952993 13953182 -103909445 + MLT1L LTR MaLR 426 611 -4 235 312 46 0 chr9 13953520 13953629 -103908998 - HAL1 LINE L1 -1641 866 753 256 254 0 14 chr9 13953775 13953846 -103908781 + (TG)n Simple_repeat Simple_repeat 1 70 0 388 165 165 0 chr9 13954005 13954108 -103908519 - MER5C DNA MER1_type 0 324 205 394 212 221 0 chr9 13954242 13954355 -103908272 + MER5A DNA MER1_type 41 178 -11 755 303 77 15 chr9 13954401 13954728 -103907899 + L2 LINE L2 2944 3290 -23 605 227 13 7 chr9 13955185 13955335 -103907292 - L1ME2 LINE L1 -14 6150 6000 913 164 57 53 chr9 13955337 13955581 -103907046 - MER96B DNA MER1_type? -170 247 3 780 256 48 37 chr9 13955597 13955866 -103906761 - MLT1G LTR MaLR -294 296 25 417 346 32 5 chr9 13957238 13957426 -103905201 - LTR16A LTR ERVL -52 398 206 1999 217 113 21 chr9 13957600 13958264 -103904363 + MER50 LTR ERV1 10 734 0 407 317 136 5 chr9 13958779 13958978 -103903649 + MIR SINE MIR 19 243 -19 207 204 0 0 chr9 13958991 13959040 -103903587 + (ATG)n Simple_repeat Simple_repeat 3 51 0 1504 179 0 75 chr9 13959066 13959374 -103903253 - AluJb SINE Alu -27 285 1 271 371 9 0 chr9 13959614 13959719 -103902908 - MIR SINE MIR -139 123 18 201 219 24 0 chr9 13959818 13959859 -103902768 - MER5B DNA MER1_type -136 42 1 21 36 0 0 chr9 13959897 13959925 -103902702 + AT_rich Low_complexity Low_complexity 1 28 0 565 216 0 0 chr9 13960045 13960156 -103902471 + FLAM_A SINE Alu 24 134 -8 440 376 78 9 chr9 13960255 13960473 -103902154 - L1MC4 LINE L1 -17 8025 7793 2303 77 0 35 chr9 13960506 13960819 -103901808 + AluY SINE Alu 1 302 -9 252 146 0 0 chr9 13960824 13960865 -103901762 - AluJ/FLAM SINE Alu -218 84 44 1072 259 52 118 chr9 13960958 13961824 -103900803 - L1MC4 LINE L1 -370 7672 6876 1761 184 16 3 chr9 13961824 13962129 -103900498 - AluJb SINE Alu -3 309 1 1072 259 52 118 chr9 13962129 13962239 -103900388 - L1MC4 LINE L1 -1166 6876 6760 749 334 71 56 chr9 13962733 13963587 -103899040 + L1MEc LINE L1 894 1823 -753 2072 136 0 13 chr9 13963800 13964102 -103898525 + AluSx SINE Alu 9 306 -6 1047 167 46 0 chr9 13964128 13964302 -103898325 + FRAM SINE Alu 1 176 0 317 270 26 37 chr9 13964341 13964530 -103898097 + L1MEc LINE L1 2387 2573 -3642 24 0 0 0 chr9 13964665 13964689 -103897938 + AT_rich Low_complexity Low_complexity 1 24 0 1323 275 102 8 chr9 13964944 13965417 -103897210 - MLT1H LTR MaLR -27 522 6 2523 66 0 0 chr9 13965442 13965743 -103896884 + AluY SINE Alu 1 301 -10 345 243 200 22 chr9 13965750 13965935 -103896692 + L1MEc LINE L1 3033 3250 -2965 383 271 69 24 chr9 13965965 13966256 -103896371 + L1MEc LINE L1 3247 3550 -2665 2088 175 44 14 chr9 13966466 13966901 -103895726 - LOR1b LTR ERV1 -13 448 1 462 297 53 29 chr9 13966952 13967406 -103895221 + L1MEc LINE L1 3828 4292 -1923 629 240 11 66 chr9 13967432 13967719 -103894908 - LTR37B LTR ERV1 0 468 198 446 250 42 7 chr9 13967836 13967980 -103894647 - LTR37B LTR ERV1 -314 154 6 334 217 62 155 chr9 13967988 13968130 -103894497 + L1MEc LINE L1 4320 4429 -1786 1543 184 16 48 chr9 13968130 13968440 -103894187 + AluJo SINE Alu 1 300 -12 334 217 62 155 chr9 13968440 13968555 -103894072 + L1MEc LINE L1 4429 4553 -1662 1496 202 22 0 chr9 13968978 13969255 -103893372 - AluJo SINE Alu -28 284 2 541 182 56 56 chr9 13969306 13969449 -103893178 + FLAM_C SINE Alu 1 143 0 206 303 45 0 chr9 13969501 13969567 -103893060 - MIR SINE MIR 0 262 194 2177 121 0 7 chr9 13969872 13970170 -103892457 + AluSx SINE Alu 3 298 -14 32743 39 4 10 chr9 13970883 13975992 -103886635 - L1PA4 LINE L1 0 6155 1081 559 102 0 0 chr9 13975960 13976072 -103886555 - L1P3 LINE L1 -6066 395 10 * 2229 85 7 3 chr9 13976205 13976498 -103886129 - AluY SINE Alu -17 294 1 443 320 164 3 chr9 13976561 13976873 -103885754 + LTR33A LTR ERVL 142 503 -20 249 283 232 0 chr9 13976989 13977088 -103885539 - L2 LINE L2 0 3313 3192 558 229 0 0 chr9 13977096 13977205 -103885422 + MER81 DNA DNA 1 109 -5 417 292 64 58 chr9 13977248 13977419 -103885208 - L2 LINE L2 -164 3149 2978 489 145 0 0 chr9 13977516 13977585 -103885042 - AluS SINE Alu -239 70 2 1425 114 0 30 chr9 13977588 13977790 -103884837 + AluSc SINE Alu 96 291 -18 351 263 73 15 chr9 13977834 13977971 -103884656 - LTR33 LTR ERVL -135 386 242 1847 152 158 13 chr9 13978179 13978553 -103884074 - MSTA LTR MaLR 0 428 1 184 333 81 0 chr9 13978906 13979005 -103883622 - MIR SINE MIR -75 187 81 483 210 5 15 chr9 13979386 13979591 -103883036 + CT-rich Low_complexity Low_complexity 1 203 0 2172 110 0 0 chr9 13979591 13979872 -103882755 - AluSq SINE Alu -32 281 1 2099 149 0 0 chr9 13980773 13981068 -103881559 - AluSx SINE Alu -13 299 5 24 0 0 0 chr9 13981513 13981537 -103881090 + AT_rich Low_complexity Low_complexity 1 24 0 269 200 86 14 chr9 13981601 13981671 -103880956 + MLT1L LTR MaLR 35 109 -506 1285 231 86 5 chr9 13981704 13982089 -103880538 + LTR40c LTR ERVL 44 459 -6 431 234 52 120 chr9 13982116 13982424 -103880203 + MLT1J LTR MaLR 124 410 -101 1674 184 3 20 chr9 13982487 13982791 -103879836 - AluJo SINE Alu -13 299 1 1222 211 0 0 chr9 13982850 13983058 -103879569 - AluJb SINE Alu -22 290 83 1797 180 7 10 chr9 13983107 13983407 -103879220 - AluJo SINE Alu -13 299 1 326 258 43 0 chr9 13984597 13984690 -103877937 - MLT1G1 LTR MaLR -498 97 1 2366 99 7 0 chr9 13985376 13985679 -103876948 + AluSg SINE Alu 1 305 -5 348 282 92 45 chr9 13985784 13986029 -103876598 + HAL1 LINE L1 3 317 -2190 324 0 0 0 chr9 13986063 13986099 -103876528 + (TG)n Simple_repeat Simple_repeat 2 37 0 1062 84 35 0 chr9 13986103 13986245 -103876382 - AluSg/x SINE Alu -25 287 141 322 120 0 0 chr9 13986245 13986295 -103876332 - Alu SINE Alu -252 50 1 429 293 75 16 chr9 13986299 13986487 -103876140 + HAL1 LINE L1 349 547 -1960 1419 268 40 21 chr9 13986750 13987172 -103875455 - LTR16A LTR ERVL -2 448 19 225 225 155 14 chr9 13987174 13987245 -103875382 + HAL1 LINE L1 738 818 -1689 585 305 24 20 chr9 13987286 13987503 -103875124 - MLT1I LTR MaLR -121 288 91 290 301 58 46 chr9 13987528 13987701 -103874926 - MLT1H1 LTR MaLR -29 526 352 1314 275 110 5 chr9 13987749 13988378 -103874249 + HAL1 LINE L1 1116 1810 -697 383 224 97 90 chr9 13988509 13988750 -103873877 + HAL1 LINE L1 2104 2349 -158 2684 94 11 0 chr9 13988750 13989110 -103873517 - THE1B LTR MaLR 0 364 1 383 224 97 90 chr9 13989110 13989136 -103873491 + HAL1 LINE L1 2349 2373 -134 319 200 0 0 chr9 13989137 13989202 -103873425 + MLT1K LTR MaLR 488 552 -36 181 206 0 132 chr9 13989297 13989365 -103873262 - MER5A DNA MER1_type -114 75 17 * 202 330 0 0 chr9 13989304 13989366 -103873261 + MER5A DNA MER1_type 116 188 -1 2090 254 35 15 chr9 13990034 13990577 -103872050 - MLT1H1 LTR MaLR -1 554 1 1309 193 68 11 chr9 13990678 13990943 -103871684 + AluJb SINE Alu 9 288 -24 21 36 0 0 chr9 13993027 13993055 -103869572 + AT_rich Low_complexity Low_complexity 1 28 0 238 167 17 17 chr9 13993698 13993758 -103868869 + (TA)n Simple_repeat Simple_repeat 1 60 0 384 273 230 25 chr9 13993926 13993949 -103868678 + MIR SINE MIR 4 21 -241 1384 208 67 18 chr9 13993949 13994276 -103868351 - MER2 DNA MER2_type 0 344 2 384 273 230 25 chr9 13994276 13994413 -103868214 + MIR SINE MIR 21 197 -65 500 282 141 46 chr9 13994419 13994660 -103867967 - LTR41 LTR ERVL -170 603 340 662 0 13 0 chr9 13994670 13994748 -103867879 + (TATTG)n Simple_repeat Simple_repeat 3 81 0 918 190 40 0 chr9 13994759 13994933 -103867694 - LTR41 LTR ERVL -590 183 3 290 222 0 0 chr9 13994940 13994994 -103867633 + MIR SINE MIR 203 256 -6 456 287 127 74 chr9 13995046 13995290 -103867337 - L1ME4a LINE L1 -210 5911 5681 783 157 0 0 chr9 13995290 13995411 -103867216 - FLAM_C SINE Alu -12 121 1 456 287 127 74 chr9 13995411 13995692 -103866935 - L1ME4a LINE L1 -440 5681 5358 8843 183 29 22 chr9 13996040 13996625 -103866002 + L1 LINE L1 2710 3289 -2857 1717 164 11 7 chr9 13996625 13996905 -103865722 + AluJb SINE Alu 1 281 -31 8843 183 29 22 chr9 13996905 13998245 -103864382 + L1 LINE L1 3289 4649 -1497 1143 163 15 0 chr9 13998246 13998448 -103864179 - L1 LINE L1 -1268 4878 4674 319 203 85 0 chr9 13998448 13998566 -103864061 - L1ME4a LINE L1 -19 6102 5975 21 36 0 0 chr9 13998658 13998686 -103863941 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr9 13998756 13998786 -103863841 + AT_rich Low_complexity Low_complexity 1 30 0 2119 138 0 0 chr9 13998790 13999081 -103863546 - AluSx SINE Alu -21 291 1 545 311 42 0 chr9 13999128 13999321 -103863306 - L1ME LINE L1 -436 5685 5485 413 310 59 31 chr9 13999482 13999737 -103862890 - L1 LINE L1 -1499 4647 4386 212 261 171 57 chr9 13999827 13999915 -103862712 + MIR SINE MIR 1 98 -164 964 240 257 7 chr9 13999923 14000335 -103862292 + LTR33 LTR ERVL 3 517 -4 1895 136 13 19 chr9 14001476 14001785 -103860842 + AluSx SINE Alu 1 307 -5 477 135 0 0 chr9 14002637 14002726 -103859901 + L1MA4A LINE L1 6207 6295 -8 1618 192 28 0 chr9 14002916 14003203 -103859424 + AluJo SINE Alu 1 295 -17 23 33 0 0 chr9 14003344 14003374 -103859253 + AT_rich Low_complexity Low_complexity 1 30 0 2346 84 0 3 chr9 14004167 14004463 -103858164 - AluY SINE Alu -16 295 1 27 0 0 0 chr9 14004467 14004494 -103858133 + AT_rich Low_complexity Low_complexity 1 27 0 683 249 110 74 chr9 14004861 14005132 -103857495 - L1 LINE L1 -1984 4162 3902 13794 141 16 36 chr9 14005132 14006935 -103855692 - Tigger1 DNA MER2_type -1 2417 580 2228 100 3 0 chr9 14006935 14007226 -103855401 - AluSq SINE Alu -21 292 1 13794 141 16 36 chr9 14007226 14007274 -103855353 - Tigger1 DNA MER2_type -1838 580 533 1749 178 3 3 chr9 14007274 14007572 -103855055 - AluJo SINE Alu -9 303 6 13794 141 16 36 chr9 14007572 14008184 -103854443 - Tigger1 DNA MER2_type -1885 533 2 683 249 110 74 chr9 14008184 14008450 -103854177 - L1 LINE L1 -2244 3902 3606 21 36 0 0 chr9 14008450 14008478 -103854149 + AT_rich Low_complexity Low_complexity 1 28 0 2005 131 35 35 chr9 14008507 14008880 -103853747 - THE1C LTR MaLR -2 373 1 803 230 20 5 chr9 14009293 14009497 -103853130 + L1M4 LINE L1 2670 2876 -3270 21326 34 8 0 chr9 14009531 14012913 -103849714 - L1PA4 LINE L1 -3 6152 2748 15408 54 6 1 chr9 14012913 14014891 -103847736 + L1PA4 LINE L1 766 2751 -3395 25 31 0 0 chr9 14015069 14015101 -103847526 + AT_rich Low_complexity Low_complexity 1 32 0 209 244 158 12 chr9 14015357 14015439 -103847188 + MIR SINE MIR 150 243 -19 27 73 0 0 chr9 14015533 14015588 -103847039 + AT_rich Low_complexity Low_complexity 1 55 0 458 270 31 75 chr9 14015594 14015820 -103846807 + MIR SINE MIR 47 262 0 23 78 0 0 chr9 14017289 14017340 -103845287 + AT_rich Low_complexity Low_complexity 1 51 0 1582 193 30 7 chr9 14017448 14017749 -103844878 + AluJo SINE Alu 3 310 -2 362 141 0 26 chr9 14017754 14017832 -103844795 + (GGA)n Simple_repeat Simple_repeat 3 78 0 31 44 0 0 chr9 14018713 14018758 -103843869 + AT_rich Low_complexity Low_complexity 1 45 0 473 276 63 16 chr9 14018921 14019048 -103843579 - MER5B DNA MER1_type 0 178 46 1553 173 14 11 chr9 14019050 14019333 -103843294 - L1MC1 LINE L1 -4 6329 6046 2308 113 0 0 chr9 14019340 14019651 -103842976 - AluSq SINE Alu -2 311 1 341 327 129 25 chr9 14020006 14020088 -103842539 + MIR SINE MIR 28 100 -162 2353 92 3 3 chr9 14020088 14020393 -103842234 - AluY SINE Alu -6 305 1 341 327 129 25 chr9 14020393 14020512 -103842115 + MIR SINE MIR 100 250 -12 21 36 0 0 chr9 14023145 14023173 -103839454 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr9 14023879 14023899 -103838728 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1717 136 38 4 chr9 14023905 14024169 -103838458 - AluSx SINE Alu -39 273 1 323 354 9 9 chr9 14025287 14025400 -103837227 + MIR SINE MIR 21 133 -129 2139 136 3 0 chr9 14025997 14026305 -103836322 - AluSq SINE Alu -4 309 1 271 203 87 14 chr9 14027048 14027117 -103835510 + MIR3 SINE MIR 130 203 -5 1188 131 11 0 chr9 14028536 14028719 -103833908 - AluSg/x SINE Alu -6 306 122 1894 128 30 20 chr9 14028928 14029232 -103833395 + AluSc SINE Alu 1 307 -2 2006 190 53 25 chr9 14029584 14030073 -103832554 + MLT1D LTR MaLR 1 503 -2 238 176 0 0 chr9 14030288 14030339 -103832288 + L1MA4A LINE L1 6005 6055 -248 281 250 62 91 chr9 14030734 14030942 -103831685 - MLT1L LTR MaLR -74 541 235 1803 175 0 3 chr9 14031843 14032140 -103830487 - AluJb SINE Alu -14 298 3 1020 207 87 103 chr9 14032378 14032734 -103829893 + MER39 LTR ERV1 5 522 -185 2240 98 0 25 chr9 14032734 14033051 -103829576 + AluY SINE Alu 3 311 0 1020 207 87 103 chr9 14033051 14033235 -103829392 + MER39 LTR ERV1 522 707 0 197 236 73 55 chr9 14033359 14033414 -103829213 + L2 LINE L2 3204 3259 -54 186 350 100 17 chr9 14033408 14033528 -103829099 + MIR SINE MIR 46 175 -87 * 442 275 36 0 chr9 14033654 14033792 -103828835 + MIR3 SINE MIR 58 200 -8 22 35 0 0 chr9 14036389 14036418 -103826209 + AT_rich Low_complexity Low_complexity 1 29 0 633 250 132 23 chr9 14036949 14037169 -103825458 + MIR SINE MIR 9 252 -10 303 298 26 40 chr9 14037165 14037316 -103825311 - MIR SINE MIR -108 154 6 * 585 224 170 0 chr9 14037316 14037463 -103825164 + MER5A DNA MER1_type 10 181 -8 234 0 0 0 chr9 14037708 14037734 -103824893 + (TA)n Simple_repeat Simple_repeat 2 27 0 1511 134 25 109 chr9 14037749 14038070 -103824557 - AluYb8 SINE Alu -24 294 1 426 297 95 18 chr9 14038210 14038432 -103824195 + MIR SINE MIR 13 251 -11 23 0 0 0 chr9 14039658 14039681 -103822946 + AT_rich Low_complexity Low_complexity 1 23 0 2856 157 4 6 chr9 14040323 14040825 -103821802 - L1MA3 LINE L1 -5 6300 5800 564 209 68 31 chr9 14041152 14041315 -103821312 + MER104 DNA Tc2 2 170 -10 249 139 0 0 chr9 14041430 14041473 -103821154 + (A)n Simple_repeat Simple_repeat 1 43 0 201 191 0 24 chr9 14042509 14042551 -103820076 + (CATA)n Simple_repeat Simple_repeat 4 44 0 427 176 80 22 chr9 14042566 14042730 -103819897 + MER104 DNA Tc2 3 177 -3 609 276 102 18 chr9 14042739 14042964 -103819663 - MIR SINE MIR -1 261 18 605 283 102 0 chr9 14043732 14043919 -103818708 + MIR SINE MIR 54 259 -3 765 256 81 18 chr9 14044547 14044770 -103817857 + MIR SINE MIR 14 250 -12 1060 234 83 18 chr9 14045597 14045935 -103816692 + L1ME3 LINE L1 5802 6161 -1 219 36 0 0 chr9 14047252 14047280 -103815347 + (TG)n Simple_repeat Simple_repeat 1 28 0 21 0 0 0 chr9 14047397 14047418 -103815209 + AT_rich Low_complexity Low_complexity 1 21 0 362 305 37 24 chr9 14048138 14048201 -103814426 - MER5B DNA MER1_type -3 175 114 1708 142 0 58 chr9 14048201 14048510 -103814117 + AluSx SINE Alu 1 291 -21 362 305 37 24 chr9 14048510 14048610 -103814017 - MER5B DNA MER1_type -64 114 10 1071 164 11 0 chr9 14048627 14048810 -103813817 - MER5A DNA MER1_type -4 185 1 2097 122 7 0 chr9 14049237 14049531 -103813096 - AluSx SINE Alu -16 296 1 1693 186 58 35 chr9 14050016 14050393 -103812234 + MLT1B LTR MaLR 1 386 -4 400 238 77 71 chr9 14051035 14051203 -103811424 - MIR SINE MIR -43 219 51 374 303 97 7 chr9 14052225 14052370 -103810257 - MIR3 SINE MIR -5 203 46 299 358 24 12 chr9 14052894 14053059 -103809568 - MIR SINE MIR -5 257 91 * 338 290 193 17 chr9 14053050 14053226 -103809401 + MIR SINE MIR 49 255 -7 2165 149 3 32 chr9 14053359 14053734 -103808893 + THE1B LTR MaLR 1 364 0 11196 112 6 0 chr9 14053735 14055303 -103807324 + THE1B-int LTR MaLR 3 1580 0 2380 126 3 29 chr9 14055303 14055677 -103806950 + THE1B LTR MaLR 1 364 0 1961 157 0 10 chr9 14055915 14056220 -103806407 - AluSx SINE Alu -10 302 1 330 288 45 9 chr9 14056243 14056354 -103806273 + L2 LINE L2 3198 3312 -1 21 36 0 0 chr9 14058059 14058087 -103804540 + AT_rich Low_complexity Low_complexity 1 28 0 414 313 22 89 chr9 14058204 14058428 -103804199 + MIR SINE MIR 12 220 -42 12586 170 13 16 chr9 14059176 14062058 -103800569 + L1PA14 LINE L1 2800 5778 -383 2537 64 0 3 chr9 14062058 14062369 -103800258 + AluY SINE Alu 1 310 -1 12586 170 13 16 chr9 14062369 14062749 -103799878 + L1PA14 LINE L1 5778 6158 -3 675 226 59 23 chr9 14062985 14063206 -103799421 - MER106A DNA MER1_type -7 229 1 21 0 0 0 chr9 14064431 14064452 -103798175 + AT_rich Low_complexity Low_complexity 1 21 0 199 294 43 33 chr9 14065889 14065981 -103796646 + MIR SINE MIR 148 240 -22 252 360 13 27 chr9 14066266 14066416 -103796211 - MIR3 SINE MIR -41 167 20 276 346 58 10 chr9 14066480 14066584 -103796043 - L2 LINE L2 -9 3304 3196 210 171 26 26 chr9 14066898 14066974 -103795653 + GA-rich Low_complexity Low_complexity 2 77 0 1279 200 35 46 chr9 14066991 14067276 -103795351 + AluJo SINE Alu 1 282 -30 315 49 0 0 chr9 14067281 14067322 -103795305 + (GA)n Simple_repeat Simple_repeat 2 42 0 374 271 97 26 chr9 14068799 14068954 -103793673 - MIR SINE MIR -44 218 53 24 32 0 0 chr9 14069708 14069739 -103792888 + AT_rich Low_complexity Low_complexity 1 31 0 476 111 33 11 chr9 14069757 14069847 -103792780 - L1PA4 LINE L1 -3 6152 6061 2835 159 4 6 chr9 14070334 14070836 -103791791 + L1MA3 LINE L1 5800 6300 -5 23 0 0 0 chr9 14071480 14071503 -103791124 + AT_rich Low_complexity Low_complexity 1 23 0 1037 224 85 4 chr9 14072090 14072349 -103790278 + MER63 DNA MER1_type 783 1062 0 2314 81 0 42 chr9 14072388 14072697 -103789930 + AluSq SINE Alu 1 296 -17 187 276 35 0 chr9 14072832 14072890 -103789737 - L2 LINE L2 0 3313 3254 263 361 33 8 chr9 14073317 14073439 -103789188 - MIR SINE MIR -77 185 61 12234 36 4 0 chr9 14074211 14076327 -103786300 - L1PA4 LINE L1 -156 5999 3880 4973 58 6 6 chr9 14076597 14077247 -103785380 - L1PA8 LINE L1 0 6172 5523 24 32 0 0 chr9 14077341 14077372 -103785255 + AT_rich Low_complexity Low_complexity 1 31 0 250 75 0 0 chr9 14078726 14078766 -103783861 - AluSp SINE Alu -2 300 261 1558 68 5 0 chr9 14078766 14078958 -103783669 - AluSp SINE Alu -120 193 1 674 281 110 26 chr9 14079335 14079680 -103782947 + MLT1I LTR MaLR 16 389 -20 264 255 0 0 chr9 14079703 14079754 -103782873 + L2 LINE L2 3218 3268 -4 358 252 238 14 chr9 14080337 14080484 -103782143 - MIR SINE MIR -1 261 82 1364 94 59 10 chr9 14080550 14080753 -103781874 - L1PA8 LINE L1 -6 6166 5954 23 33 0 0 chr9 14081044 14081074 -103781553 + AT_rich Low_complexity Low_complexity 1 30 0 21 89 0 0 chr9 14081530 14081586 -103781041 + AT_rich Low_complexity Low_complexity 1 56 0 227 209 0 0 chr9 14082327 14082370 -103780257 - MIR SINE MIR -57 151 109 270 299 0 0 chr9 14082445 14082522 -103780105 - MIR SINE MIR -102 160 84 301 215 28 37 chr9 14084181 14084288 -103778339 - L1ME4a LINE L1 -70 6051 5946 271 200 0 0 chr9 14084478 14084533 -103778094 + L1ME3A LINE L1 6111 6165 -5 348 315 66 11 chr9 14084560 14084741 -103777886 - L1ME4a LINE L1 -293 5828 5638 211 263 95 21 chr9 14085001 14085096 -103777531 - L2 LINE L2 -4 3268 3167 234 257 57 14 chr9 14085168 14085238 -103777389 + MIR SINE MIR 121 193 -69 239 344 64 8 chr9 14086755 14086880 -103775747 + MIR SINE MIR 57 188 -74 192 318 16 16 chr9 14088128 14088191 -103774436 - MIR SINE MIR -197 65 3 2409 87 3 3 chr9 14088237 14088546 -103774081 + AluSg SINE Alu 2 310 0 200 350 12 25 chr9 14088673 14088753 -103773874 + L2 LINE L2 2624 2702 -612 23 0 0 0 chr9 14089022 14089045 -103773582 + AT_rich Low_complexity Low_complexity 1 23 0 520 252 76 0 chr9 14089533 14089664 -103772963 + MER69A DNA AcHobo 37 177 0 417 268 51 51 chr9 14090862 14091019 -103771608 - MIR SINE MIR -72 190 34 316 251 158 42 chr9 14091358 14091573 -103771054 + L1ME4a LINE L1 5725 5964 -157 216 0 0 0 chr9 14091580 14091604 -103771023 + (TG)n Simple_repeat Simple_repeat 1 24 0 359 298 147 18 chr9 14091710 14091935 -103770692 + MIR SINE MIR 7 260 -2 1543 162 68 11 chr9 14092151 14092429 -103770198 - AluJb SINE Alu -8 304 11 1773 154 17 7 chr9 14092876 14093174 -103769453 + LTR1 LTR ERV1 485 785 0 196 333 31 21 chr9 14093326 14093422 -103769205 - L2 LINE L2 -419 2895 2799 275 333 81 0 chr9 14093442 14093565 -103769062 - MIR SINE MIR -77 185 53 26 0 0 0 chr9 14093807 14093833 -103768794 + AT_rich Low_complexity Low_complexity 1 26 0 813 45 63 0 chr9 14093833 14093944 -103768683 - L1PA4 LINE L1 -3 6152 6035 222 37 0 0 chr9 14093944 14093971 -103768656 + (TTCC)n Simple_repeat Simple_repeat 4 30 0 240 111 0 0 chr9 14094510 14094546 -103768081 + (CTAA)n Simple_repeat Simple_repeat 1 36 0 324 70 0 0 chr9 14096189 14096232 -103766395 + (TG)n Simple_repeat Simple_repeat 2 44 0 396 0 0 0 chr9 14097377 14097421 -103765206 + (TA)n Simple_repeat Simple_repeat 2 45 0 333 0 0 0 chr9 14097422 14097459 -103765168 + (CA)n Simple_repeat Simple_repeat 1 37 0 2093 117 3 0 chr9 14097987 14098319 -103764308 + AluSx SINE Alu 1 333 0 348 254 108 39 chr9 14098439 14098569 -103764058 + MIR SINE MIR 16 154 -108 680 224 13 19 chr9 14098647 14098803 -103763824 + MER5B DNA MER1_type 24 178 0 209 329 29 0 chr9 14100272 14100342 -103762285 - L2 LINE L2 -1 3271 3200 302 329 48 27 chr9 14100400 14100546 -103762081 + MIR SINE MIR 57 205 -57 246 224 0 0 chr9 14100861 14100910 -103761717 + GA-rich Low_complexity Low_complexity 2 50 0 810 231 23 0 chr9 14101011 14101184 -103761443 + MER45A DNA AcHobo 2 178 0 398 235 110 29 chr9 14101918 14101931 -103760696 - L3 LINE CR1 -159 1418 1407 2246 120 0 0 chr9 14101931 14102230 -103760397 - AluSx SINE Alu -8 304 6 398 235 110 29 chr9 14102230 14102352 -103760275 - L3 LINE CR1 -170 1407 1272 182 367 0 62 chr9 14103536 14103664 -103758963 - MIR SINE MIR -120 142 23 32 0 0 0 chr9 14104006 14104038 -103758589 + AT_rich Low_complexity Low_complexity 1 32 0 311 261 54 9 chr9 14104994 14105105 -103757522 + MIR SINE MIR 147 262 0 265 303 91 45 chr9 14105786 14105918 -103756709 - MIR3 SINE MIR -38 170 33 991 282 4 20 chr9 14105999 14106251 -103756376 - MIR SINE MIR -10 252 5 198 71 0 0 chr9 14108736 14108764 -103753863 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 21 82 0 0 chr9 14110119 14110168 -103752459 + AT_rich Low_complexity Low_complexity 1 49 0 891 313 36 48 chr9 14113027 14113420 -103749207 + L3 LINE CR1 983 1370 -207 685 233 138 35 chr9 14113562 14113794 -103748833 - L2 LINE L2 0 3313 3058 418 263 53 7 chr9 14114394 14114546 -103748081 - MLT1J LTR MaLR -4 507 349 261 366 52 22 chr9 14114735 14114869 -103747758 - MIR SINE MIR -55 153 16 287 267 47 12 chr9 14117128 14117214 -103745413 - MIR3 SINE MIR -9 199 111 348 24 0 0 chr9 14117919 14117960 -103744667 + (CA)n Simple_repeat Simple_repeat 1 41 0 2075 85 37 0 chr9 14119831 14120133 -103742494 - AluSg SINE Alu 0 312 1 448 217 273 0 chr9 14120708 14120851 -103741776 + MER5A DNA MER1_type 7 188 -1 269 26 26 0 chr9 14121067 14121105 -103741522 + (CA)n Simple_repeat Simple_repeat 1 39 0 342 338 164 17 chr9 14121124 14121355 -103741272 - L2 LINE L2 -3 3310 3046 311 332 111 29 chr9 14121623 14121903 -103740724 + LTR16C LTR ERVL 189 491 0 1282 261 155 34 chr9 14121905 14122470 -103740157 - L2 LINE L2 -266 3047 2414 368 314 84 26 chr9 14122744 14122970 -103739657 - MIR SINE MIR -10 252 14 1752 162 26 13 chr9 14123192 14123500 -103739127 - AluJb SINE Alu 0 312 1 197 330 55 118 chr9 14124499 14124950 -103737677 - L2 LINE L2 -14 3258 2836 892 215 0 0 chr9 14125074 14125237 -103737390 - FRAM SINE Alu -3 163 1 1638 105 149 0 chr9 14125266 14125514 -103737113 - AluSx SINE Alu -16 286 2 816 152 0 0 chr9 14125526 14125651 -103736976 - FLAM_C SINE Alu -8 125 1 32 57 0 0 chr9 14125882 14125935 -103736692 + AT_rich Low_complexity Low_complexity 1 53 0 256 306 98 27 chr9 14126522 14126683 -103735944 + MER5A DNA MER1_type 1 181 -8 574 183 179 0 chr9 14126807 14126959 -103735668 + MER5A DNA MER1_type 4 189 0 755 265 115 0 chr9 14126967 14127167 -103735460 + MER58A DNA MER1_type 1 223 -1 2212 123 3 0 chr9 14127969 14128277 -103734350 + AluSx SINE Alu 1 309 -3 771 255 21 65 chr9 14128388 14128448 -103734179 + LTR16C LTR ERVL 209 270 -221 2296 96 7 3 chr9 14128448 14128749 -103733878 - AluSc SINE Alu -7 302 1 771 255 21 65 chr9 14128749 14128977 -103733650 + LTR16C LTR ERVL 270 484 -7 1292 238 110 42 chr9 14128977 14129476 -103733151 + MLT1F LTR MaLR 1 593 0 533 357 75 27 chr9 14129923 14130324 -103732303 - MLT1K LTR MaLR -162 426 7 675 238 61 0 chr9 14131568 14131732 -103730895 - MER69A DNA AcHobo 0 177 4 634 295 45 37 chr9 14131938 14132182 -103730445 + MIR SINE MIR 17 262 0 1632 212 21 9 chr9 14132467 14132891 -103729736 + L1M4 LINE L1 4412 4840 -1306 21 36 0 0 chr9 14133072 14133100 -103729527 + AT_rich Low_complexity Low_complexity 1 28 0 2071 175 31 44 chr9 14133916 14134368 -103728259 - LTR47A LTR ERVL -6 446 1 220 355 125 5 chr9 14134382 14134582 -103728045 - L2 LINE L2 -530 2784 2561 1140 250 68 33 chr9 14135017 14135594 -103727033 - L1MC5 LINE L1 -35 7926 7330 564 247 38 59 chr9 14135642 14135828 -103726799 + MER20 DNA MER1_type 29 210 -9 15492 211 17 18 chr9 14135972 14141132 -103721495 - L1PA15 LINE L1 -13 6803 1221 2316 103 7 0 chr9 14141132 14141434 -103721193 - AluY SINE Alu -7 304 1 15492 211 17 18 chr9 14141434 14142655 -103719972 - L1PA15 LINE L1 -5595 1221 1 453 129 10 40 chr9 14142665 14142766 -103719861 - L1MC5 LINE L1 -784 7177 7080 359 326 52 7 chr9 14143475 14143610 -103719017 - MLT1K LTR MaLR -391 197 57 183 335 150 17 chr9 14144838 14145011 -103717616 - L3b LINE CR1 -102 1481 1286 885 307 69 10 chr9 14145324 14145739 -103716888 + LTR16A LTR ERVL 1 442 -15 1133 271 44 53 chr9 14145755 14146208 -103716419 + HERV16 LTR ERVL 1 449 -4547 357 304 35 8 chr9 14146360 14146537 -103716090 + LTR16A1 LTR ERVL 33 211 -239 243 188 0 0 chr9 14146919 14146967 -103715660 + CT-rich Low_complexity Low_complexity 5 52 0 330 300 158 0 chr9 14147392 14147512 -103715115 - MIR3 SINE MIR -39 169 31 24 32 0 0 chr9 14147598 14147629 -103714998 + AT_rich Low_complexity Low_complexity 1 31 0 212 216 0 74 chr9 14147747 14147895 -103714732 + CT-rich Low_complexity Low_complexity 2 138 0 410 315 52 4 chr9 14149274 14149506 -103713121 - L1ME4a LINE L1 -276 5845 5603 291 366 91 0 chr9 14150255 14150441 -103712186 + MIR SINE MIR 60 262 0 223 283 17 17 chr9 14150698 14150758 -103711869 + MIR3 SINE MIR 97 156 -52 2087 113 55 0 chr9 14150865 14151157 -103711470 + AluSx SINE Alu 1 308 -4 22 0 0 0 chr9 14151193 14151215 -103711412 + AT_rich Low_complexity Low_complexity 1 22 0 1444 194 132 52 chr9 14151587 14152051 -103710576 + MLT1D LTR MaLR 5 505 0 24 0 0 0 chr9 14154291 14154315 -103708312 + AT_rich Low_complexity Low_complexity 1 24 0 324 315 8 8 chr9 14154607 14154734 -103707893 + MLT1L LTR MaLR 118 244 -371 387 293 103 8 chr9 14154785 14155038 -103707589 + MLT1L LTR MaLR 331 607 -8 351 0 0 0 chr9 14155170 14155209 -103707418 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 296 307 35 26 chr9 14157299 14157413 -103705214 + MIR SINE MIR 10 124 -138 192 276 26 92 chr9 14157454 14157530 -103705097 - L2 LINE L2 0 3313 3243 248 217 43 29 chr9 14157564 14157633 -103704994 + MIR SINE MIR 192 261 -1 365 301 108 42 chr9 14159246 14159581 -103703046 - MLT1I LTR MaLR 0 409 53 1574 121 0 27 chr9 14159741 14159997 -103702630 - L1PA16 LINE L1 -1 6165 5917 1876 125 3 3 chr9 14159997 14160294 -103702333 + L1PA16 LINE L1 5611 5907 -259 949 176 58 0 chr9 14160354 14160542 -103702085 + MER20 DNA MER1_type 1 199 -20 243 205 0 64 chr9 14160618 14160696 -103701931 + L1ME2 LINE L1 4747 4819 -1327 367 317 21 14 chr9 14160727 14160869 -103701758 + L1ME2 LINE L1 4910 5052 -1094 3140 215 71 18 chr9 14161049 14161110 -103701517 + L1MC3 LINE L1 6797 6853 -932 207 0 0 0 chr9 14161110 14161133 -103701494 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3140 215 71 18 chr9 14161133 14162004 -103700623 + L1MC3 LINE L1 6853 7778 -7 262 270 14 7 chr9 14162027 14162175 -103700452 + L1M2 LINE L1 5297 5445 -846 999 106 0 0 chr9 14162223 14162355 -103700272 - AluYb8 SINE Alu -186 132 1 2071 137 0 7 chr9 14162446 14162752 -103699875 + AluJb SINE Alu 9 312 0 368 236 90 46 chr9 14162799 14162869 -103699758 + L1ME2 LINE L1 5601 5666 -498 1959 140 19 29 chr9 14162869 14163248 -103699379 + THE1C LTR MaLR 1 375 0 368 236 90 46 chr9 14163248 14163376 -103699251 + L1ME2 LINE L1 5666 5804 -360 224 139 69 28 chr9 14163396 14163468 -103699159 + (TATATG)n Simple_repeat Simple_repeat 2 76 0 297 206 168 76 chr9 14163797 14163928 -103698699 + MER5A DNA MER1_type 47 189 0 190 196 22 22 chr9 14164207 14164253 -103698374 + L2 LINE L2 1190 1235 -2079 295 231 122 103 chr9 14164753 14165064 -103697563 + MLT1H LTR MaLR 230 546 -3 558 198 16 110 chr9 14166783 14166965 -103695662 + L1ME2 LINE L1 5965 6129 -35 669 304 99 21 chr9 14166973 14167256 -103695371 - L2 LINE L2 -470 2844 2540 207 0 0 0 chr9 14167266 14167289 -103695338 + (CTGTG)n Simple_repeat Simple_repeat 2 24 0 819 249 179 6 chr9 14167289 14167647 -103694980 + LTR16A LTR ERVL 26 445 -5 294 244 23 12 chr9 14167777 14167863 -103694764 + MIR SINE MIR 60 146 -62 201 39 0 0 chr9 14168156 14168182 -103694445 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 356 287 70 9 chr9 14168310 14168425 -103694202 + L2 LINE L2 2934 3055 -217 1205 251 51 11 chr9 14168894 14169382 -103693245 + MLT1H1 LTR MaLR 1 555 0 1985 130 39 41 chr9 14169571 14169933 -103692694 - THE1B LTR MaLR -3 361 1 1506 150 27 11 chr9 14169972 14170232 -103692395 + AluJo SINE Alu 49 312 0 615 157 157 0 chr9 14170271 14170379 -103692248 + FLAM_C SINE Alu 1 125 -18 184 212 82 129 chr9 14170734 14170771 -103691856 + MER5A DNA MER1_type 97 134 -55 2445 75 10 0 chr9 14170771 14171079 -103691548 - AluSp SINE Alu -1 312 2 184 212 82 129 chr9 14171079 14171126 -103691501 + MER5A DNA MER1_type 134 177 -12 2104 119 3 10 chr9 14171689 14171992 -103690635 + AluSx SINE Alu 1 301 -11 814 245 39 10 chr9 14174806 14175010 -103687617 - MIR SINE MIR 0 262 53 2272 117 0 13 chr9 14177446 14177762 -103684865 + AluSx SINE Alu 1 312 0 2010 133 11 0 chr9 14179406 14179691 -103682936 - AluSx SINE Alu -24 288 1 1034 292 31 58 chr9 14180070 14180705 -103681922 - L2 LINE L2 -5 3308 2694 881 233 193 7 chr9 14180788 14181093 -103681534 + LTR50 LTR ERVL 23 384 -411 553 205 176 5 chr9 14181121 14181331 -103681296 + LTR50 LTR ERVL 547 792 -3 1238 279 71 8 chr9 14181333 14181727 -103680900 - L2 LINE L2 -614 2700 2282 323 314 51 8 chr9 14181858 14181976 -103680651 + MIR SINE MIR 17 139 -123 467 270 72 7 chr9 14182075 14182227 -103680400 + MIR SINE MIR 84 245 -17 2416 115 13 13 chr9 14182477 14182852 -103679775 + THE1C LTR MaLR 1 375 0 339 285 190 22 chr9 14183117 14183296 -103679331 + MIR SINE MIR 3 211 -51 2046 124 0 0 chr9 14183381 14183655 -103678972 - AluSx SINE Alu -17 295 22 22 0 0 0 chr9 14184286 14184308 -103678319 + AT_rich Low_complexity Low_complexity 1 22 0 351 0 0 0 chr9 14186093 14186132 -103676495 + (CA)n Simple_repeat Simple_repeat 2 40 0 459 0 0 0 chr9 14187598 14187649 -103674978 + (TA)n Simple_repeat Simple_repeat 1 51 0 309 354 41 7 chr9 14187721 14187903 -103674724 + MIR SINE MIR 5 192 -62 464 321 51 19 chr9 14188321 14188536 -103674091 - MIR SINE MIR -29 233 12 2189 100 3 3 chr9 14189139 14189438 -103673189 + AluSg SINE Alu 1 299 -11 391 269 85 90 chr9 14189827 14190440 -103672187 + L1ME4a LINE L1 5494 6103 -18 797 188 27 107 chr9 14191649 14191910 -103670717 - L1MC4 LINE L1 -1179 6863 6624 180 158 0 0 chr9 14191923 14191961 -103670666 + (TA)n Simple_repeat Simple_repeat 2 39 0 353 273 8 0 chr9 14192187 14192308 -103670319 - L1MC4 LINE L1 -1461 6581 6460 504 0 0 0 chr9 14192855 14192911 -103669716 + (TG)n Simple_repeat Simple_repeat 1 56 0 492 279 186 49 chr9 14193131 14193497 -103669130 + MLT1J2 LTR MaLR 31 446 -4 452 76 0 0 chr9 14193622 14193688 -103668939 - AluY SINE Alu -6 304 239 1449 80 0 0 chr9 14193688 14193864 -103668763 - AluY SINE Alu -135 176 1 201 286 82 61 chr9 14195419 14195517 -103667110 - L2 LINE L2 -5 3267 3168 357 323 92 15 chr9 14195569 14195699 -103666928 - MER91A DNA MER1_type -21 175 36 223 244 0 0 chr9 14196628 14196673 -103665954 + GA-rich Low_complexity Low_complexity 1 45 0 402 377 14 0 chr9 14196723 14196869 -103665758 + MIR3 SINE MIR 32 179 -29 212 172 0 31 chr9 14197521 14197585 -103665042 + GA-rich Low_complexity Low_complexity 3 64 0 5443 124 21 3 chr9 14198095 14199453 -103663174 - L1PA15 LINE L1 -3 6162 4765 2318 274 49 21 chr9 14199457 14200784 -103661843 - L1PA13 LINE L1 -4962 1825 1 600 272 97 9 chr9 14201314 14201531 -103661096 - MIR SINE MIR -6 256 21 515 268 56 62 chr9 14202985 14203325 -103659302 + L1MC4a LINE L1 5727 6064 -1744 22 35 0 0 chr9 14203494 14203523 -103659104 + AT_rich Low_complexity Low_complexity 1 29 0 243 246 0 0 chr9 14203551 14203608 -103659019 - L1 LINE L1 -1208 4938 4882 761 209 20 7 chr9 14203734 14203887 -103658740 - FRAM SINE Alu -11 155 1 354 318 43 51 chr9 14204022 14204203 -103658424 - L1 LINE L1 -1537 4609 4428 9604 80 18 4 chr9 14204203 14206317 -103656310 - L1PA7 LINE L1 -2 6152 4018 354 318 43 51 chr9 14206317 14206601 -103656026 - L1 LINE L1 -1718 4428 4132 252 0 0 0 chr9 14208087 14208115 -103654512 + (TG)n Simple_repeat Simple_repeat 2 29 0 208 250 0 0 chr9 14209458 14209514 -103653113 + A-rich Low_complexity Low_complexity 1 56 0 286 304 22 0 chr9 14209514 14209603 -103653024 + L3 LINE CR1 1392 1482 -95 420 254 177 8 chr9 14209603 14209733 -103652894 - MER5A DNA MER1_type 0 189 38 2191 120 13 0 chr9 14210770 14211078 -103651549 + AluSq SINE Alu 1 312 -1 568 274 84 31 chr9 14211655 14211881 -103650746 + MIR SINE MIR 15 252 -10 333 251 82 88 chr9 14211897 14212068 -103650559 + MIR SINE MIR 79 248 -14 21 0 0 0 chr9 14212082 14212103 -103650524 + AT_rich Low_complexity Low_complexity 1 21 0 207 391 68 24 chr9 14212739 14212946 -103649681 + L2 LINE L2 2679 2894 -420 258 264 91 0 chr9 14213031 14213152 -103649475 + L1MEd LINE L1 46 177 -5942 251 324 102 36 chr9 14213280 14213505 -103649122 + L1MEd LINE L1 307 546 -5573 281 217 79 122 chr9 14213839 14214208 -103648419 + L1MEd LINE L1 895 1247 -4872 335 319 77 64 chr9 14214260 14214495 -103648132 + L1MEc LINE L1 111 348 -6048 4114 143 58 23 chr9 14215232 14215976 -103646651 - LTR1 LTR ERV1 0 785 16 1269 286 135 29 chr9 14216206 14217203 -103645424 + L1MEc LINE L1 1265 2367 -4029 3316 225 44 22 chr9 14217282 14218410 -103644217 - L1ME1 LINE L1 0 6166 5018 395 278 181 29 chr9 14218628 14219170 -103643457 + L1P LINE L1 4027 4667 -1479 189 0 0 0 chr9 14222276 14222297 -103640330 + (T)n Simple_repeat Simple_repeat 1 21 0 2155 128 0 0 chr9 14222929 14223219 -103639408 - AluSx SINE Alu -22 290 1 550 184 53 9 chr9 14223939 14224053 -103638574 + MLT1A1 LTR MaLR 4 122 -243 313 242 247 42 chr9 14224538 14224728 -103637899 + MIR SINE MIR 28 256 -6 217 359 101 38 chr9 14225790 14225949 -103636678 - L3 LINE CR1 -3 1574 1406 200 233 0 0 chr9 14225987 14226030 -103636597 + (TA)n Simple_repeat Simple_repeat 1 43 0 581 324 70 9 chr9 14226074 14226287 -103636340 + MIR SINE MIR 37 262 0 453 216 10 49 chr9 14226334 14226436 -103636191 - Tigger7 DNA MER2_type 0 2491 2394 * 1294 167 108 4 chr9 14226435 14226675 -103635952 - Tigger7 DNA MER2_type -466 267 3 418 289 37 44 chr9 14226889 14227148 -103635479 - L1ME3A LINE L1 -225 5945 5691 256 330 33 0 chr9 14227171 14227262 -103635365 - L3 LINE CR1 -211 1366 1273 2215 186 22 5 chr9 14227532 14227945 -103634682 - MSTB LTR MaLR -6 420 1 28 61 0 0 chr9 14228099 14228148 -103634479 + AT_rich Low_complexity Low_complexity 1 49 0 849 187 187 0 chr9 14228588 14228786 -103633841 + MER46A DNA MER2_type 1 235 -1 226 330 23 29 chr9 14228830 14229003 -103633624 - L1MC/D LINE L1 -1954 5854 5683 311 261 87 26 chr9 14229003 14229118 -103633509 - L2 LINE L2 -10 3303 3182 21 0 0 0 chr9 14229530 14229551 -103633076 + AT_rich Low_complexity Low_complexity 1 21 0 37 0 0 0 chr9 14229725 14229762 -103632865 + AT_rich Low_complexity Low_complexity 1 37 0 363 23 0 0 chr9 14229803 14229847 -103632780 + (TTA)n Simple_repeat Simple_repeat 2 45 0 2505 77 3 0 chr9 14229893 14230205 -103632422 - AluSp SINE Alu 0 313 1 26 30 0 0 chr9 14230279 14230312 -103632315 + AT_rich Low_complexity Low_complexity 1 33 0 314 331 41 8 chr9 14230813 14230934 -103631693 + MIR SINE MIR 47 171 -91 716 252 26 17 chr9 14231259 14231489 -103631138 + L1ME3A LINE L1 5868 6099 -71 2293 76 3 0 chr9 14231587 14231875 -103630752 - AluY SINE Alu -22 289 1 252 244 16 41 chr9 14231918 14232041 -103630586 - L1ME4a LINE L1 -17 6104 5985 374 248 162 30 chr9 14232051 14232249 -103630378 - L1ME4a LINE L1 -195 5926 5703 183 42 0 0 chr9 14234782 14234806 -103627821 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1667 116 66 76 chr9 14235502 14235805 -103626822 - AluSx SINE Alu -12 300 1 1988 143 7 7 chr9 14236109 14236417 -103626210 + AluJb SINE Alu 1 308 -4 331 238 0 76 chr9 14236793 14236898 -103625729 + MIR SINE MIR 97 193 -69 6602 152 15 20 chr9 14237463 14237810 -103624817 - L1PB1 LINE L1 -1 6150 5802 222 37 0 0 chr9 14237810 14237837 -103624790 + (TG)n Simple_repeat Simple_repeat 2 28 0 6602 152 15 20 chr9 14237837 14239676 -103622951 - L1PB1 LINE L1 -349 5802 3977 236 374 12 0 chr9 14240155 14240238 -103622389 - L2 LINE L2 -3 3310 3227 212 158 0 0 chr9 14241353 14241391 -103621236 + CT-rich Low_complexity Low_complexity 1 38 0 369 131 0 0 chr9 14241408 14241469 -103621158 + (CA)n Simple_repeat Simple_repeat 2 62 0 324 0 0 0 chr9 14241922 14241958 -103620669 + (CA)n Simple_repeat Simple_repeat 2 37 0 270 272 39 39 chr9 14242085 14242229 -103620398 + MER5B DNA MER1_type 29 182 -7 180 163 0 0 chr9 14242254 14242297 -103620330 + (TGAA)n Simple_repeat Simple_repeat 3 45 0 278 371 41 6 chr9 14243352 14243517 -103619110 - MIR3 SINE MIR -13 195 22 2160 122 0 6 chr9 14243835 14244147 -103618480 + AluSx SINE Alu 1 310 -2 1672 163 14 14 chr9 14244416 14244711 -103617916 + AluSx SINE Alu 3 297 -15 850 267 114 45 chr9 14245580 14245984 -103616643 + MER115 DNA AcHobo 262 693 0 226 308 15 0 chr9 14247142 14247207 -103615420 + MIR SINE MIR 74 139 -123 407 93 47 23 chr9 14248381 14248467 -103614160 - L1MA9 LINE L1 0 6312 6225 3652 142 81 9 chr9 14248485 14249155 -103613472 - L1MA9 LINE L1 -149 6163 5446 1788 45 18 18 chr9 14249169 14249391 -103613236 - AluY SINE Alu -13 298 77 1019 193 57 5 chr9 14250659 14250871 -103611756 + MER58A DNA MER1_type 2 224 0 239 304 29 0 chr9 14252067 14252136 -103610491 + CT-rich Low_complexity Low_complexity 5 75 0 240 86 0 0 chr9 14252460 14252495 -103610132 + (TCC)n Simple_repeat Simple_repeat 1 35 0 264 282 28 0 chr9 14252661 14252732 -103609895 + (TATG)n Simple_repeat Simple_repeat 2 74 0 195 283 0 0 chr9 14254699 14254745 -103607882 - L2 LINE L2 -26 3287 3242 785 218 39 6 chr9 14254780 14254959 -103607668 - MIR SINE MIR 0 262 78 480 313 124 41 chr9 14255577 14256143 -103606484 - L2 LINE L2 -580 2734 2122 1065 186 38 0 chr9 14257224 14257434 -103605193 + MER20 DNA MER1_type 2 219 0 1713 156 27 16 chr9 14257864 14258204 -103604423 + THE1C LTR MaLR 1 399 -29 802 124 0 0 chr9 14258238 14258359 -103604268 - L1PB1 LINE L1 -1 6150 6030 231 108 27 0 chr9 14258367 14258404 -103604223 + THE1C LTR MaLR 391 428 0 1924 164 3 0 chr9 14258850 14259148 -103603479 + AluJb SINE Alu 1 299 -13 680 132 23 8 chr9 14259232 14259361 -103603266 + L1MA9 LINE L1 6175 6305 -7 275 236 83 90 chr9 14259591 14259735 -103602892 + L2 LINE L2 3166 3308 -5 429 296 25 0 chr9 14259882 14260044 -103602583 - L1ME1 LINE L1 -5 6161 5996 213 403 0 0 chr9 14260395 14260472 -103602155 + L2 LINE L2 3231 3307 -6 1990 137 0 3 chr9 14260556 14260855 -103601772 - AluSx SINE Alu -14 298 1 763 139 0 0 chr9 14260868 14260983 -103601644 - AluSp/q SINE Alu -14 299 185 2143 100 13 13 chr9 14262372 14262682 -103599945 + AluSx SINE Alu 1 310 -2 34 24 0 0 chr9 14262735 14262776 -103599851 + AT_rich Low_complexity Low_complexity 1 41 0 272 320 39 13 chr9 14263046 14263199 -103599428 - L1MDa LINE L1 -3572 3276 3120 612 306 91 8 chr9 14263200 14263442 -103599185 - MIR SINE MIR 0 262 1 912 173 70 9 chr9 14263735 14263949 -103598678 + MER33 DNA MER1_type 5 231 -93 938 171 0 24 chr9 14263952 14264116 -103598511 + FRAM SINE Alu 2 161 -15 352 137 10 128 chr9 14264116 14264218 -103598409 + MER33 DNA MER1_type 271 360 -3 334 199 166 40 chr9 14264761 14264912 -103597715 - L1MDa LINE L1 -4518 2330 2161 2994 196 77 13 chr9 14265130 14266201 -103596426 - L1ME1 LINE L1 -63 6103 4959 11869 200 88 5 chr9 14266322 14268966 -103593661 - L1M4 LINE L1 -3984 2865 2 21 0 0 0 chr9 14268968 14268989 -103593638 + AT_rich Low_complexity Low_complexity 1 21 0 1729 119 31 97 chr9 14269366 14269685 -103592942 - AluSx SINE Alu -14 298 1 215 345 34 61 chr9 14270360 14270508 -103592119 - L2 LINE L2 -609 2705 2562 22 0 0 0 chr9 14270657 14270679 -103591948 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr9 14271604 14271632 -103590995 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr9 14271790 14271815 -103590812 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr9 14273963 14273987 -103588640 + AT_rich Low_complexity Low_complexity 1 24 0 325 254 117 73 chr9 14274879 14275084 -103587543 + MIR SINE MIR 49 262 0 275 188 145 0 chr9 14275743 14275812 -103586815 + MIR SINE MIR 78 156 -106 1001 217 55 0 chr9 14276436 14276653 -103585974 - MLT1A1 LTR MaLR 0 365 137 324 258 45 8 chr9 14276698 14276830 -103585797 + MER103 DNA DNA 28 164 -2 21 0 0 0 chr9 14277307 14277328 -103585299 + AT_rich Low_complexity Low_complexity 1 21 0 892 259 110 5 chr9 14277419 14277828 -103584799 - L1ME4a LINE L1 -128 5993 5542 683 284 155 36 chr9 14278233 14278620 -103584007 + L2 LINE L2 2881 3313 0 285 29 0 0 chr9 14279094 14279128 -103583499 + (TC)n Simple_repeat Simple_repeat 1 34 0 233 287 226 11 chr9 14279871 14280052 -103582575 - L3 LINE CR1 -169 1408 1189 520 304 32 57 chr9 14280055 14280338 -103582289 + Charlie8 DNA MER1_type 1 276 -2141 253 353 67 20 chr9 14280506 14280656 -103581971 - L3 LINE CR1 -384 1193 1037 1190 207 102 23 chr9 14280660 14281003 -103581624 + MLT1A2 LTR MaLR 1 370 -4 189 364 20 10 chr9 14281082 14281181 -103581446 - L3 LINE CR1 -665 912 813 302 279 61 41 chr9 14281207 14281354 -103581273 + MIR3 SINE MIR 8 157 -51 832 156 0 0 chr9 14281738 14281860 -103580767 - FLAM_C SINE Alu -18 125 4 22 0 0 0 chr9 14284586 14284608 -103578019 + AT_rich Low_complexity Low_complexity 1 22 0 1766 174 11 27 chr9 14284923 14285297 -103577330 - MER73 LTR ERVL 0 644 277 213 204 0 41 chr9 14285305 14285354 -103577273 + CT-rich Low_complexity Low_complexity 3 49 0 1648 206 33 26 chr9 14285360 14285853 -103576774 - MER54A LTR ERVL -345 398 1 398 287 150 18 chr9 14286998 14287165 -103575462 + MIR SINE MIR 2 190 -72 418 330 74 37 chr9 14287463 14287896 -103574731 - LTR33 LTR ERVL 0 521 73 2354 114 0 6 chr9 14287917 14288232 -103574395 + AluSq SINE Alu 1 313 0 823 151 25 0 chr9 14288278 14288437 -103574190 + LTR24C LTR ERV1 473 635 0 295 167 20 98 chr9 14288437 14288539 -103574088 + L1MA9 LINE L1 5714 5790 -378 2011 179 43 14 chr9 14288581 14288937 -103573690 + L1MA9 LINE L1 5802 6175 -137 336 48 0 0 chr9 14288937 14288979 -103573648 + (CA)n Simple_repeat Simple_repeat 1 42 0 2011 179 43 14 chr9 14288979 14289068 -103573559 + L1MA9 LINE L1 6175 6260 -52 1558 184 89 77 chr9 14289075 14289504 -103573123 + MER21B LTR ERV1 1 434 -429 1657 179 0 0 chr9 14289612 14289874 -103572753 - AluJb SINE Alu -50 262 1 1338 57 0 0 chr9 14290058 14290247 -103572380 + AluY SINE Alu 124 312 0 4937 166 16 4 chr9 14290282 14291284 -103571343 - L1MA4 LINE L1 -817 5329 4316 782 178 19 0 chr9 14291285 14291442 -103571185 + L1MA4 LINE L1 5331 5490 -815 5349 184 30 17 chr9 14291444 14297024 -103565603 + L1PA13 LINE L1 217 5996 -818 2228 108 3 0 chr9 14297024 14297319 -103565308 + AluSc SINE Alu 1 296 -13 5349 184 30 17 chr9 14297319 14298149 -103564478 + L1PA13 LINE L1 5996 6814 0 4101 144 50 30 chr9 14298149 14298945 -103563682 + L1MA4 LINE L1 5477 6298 -2 225 228 18 123 chr9 14299111 14299225 -103563402 + L1MA9 LINE L1 2659 2760 -3386 4171 258 68 49 chr9 14299239 14301552 -103561075 + L1ME3 LINE L1 2919 5303 -843 1374 231 57 33 chr9 14301553 14301921 -103560706 + MLT1D LTR MaLR 123 499 -6 250 221 126 0 chr9 14301969 14302064 -103560563 + L1ME3 LINE L1 5680 5786 -376 2305 106 0 19 chr9 14302136 14302448 -103560179 - AluSq SINE Alu -7 306 1 1604 200 90 65 chr9 14302501 14302992 -103559635 - MLT1D LTR MaLR -2 503 1 617 329 148 34 chr9 14303360 14304014 -103558613 - L2 LINE L2 -1966 1348 620 267 330 94 52 chr9 14304045 14304312 -103558315 - L2 LINE L2 -874 2440 2163 2190 67 11 0 chr9 14304425 14304694 -103557933 - AluY SINE Alu -10 301 30 234 0 0 0 chr9 14304714 14304740 -103557887 + (CA)n Simple_repeat Simple_repeat 1 26 0 3196 197 57 40 chr9 14305083 14305566 -103557061 + L1MA9 LINE L1 3329 3833 -2313 1251 181 165 0 chr9 14305566 14305814 -103556813 + AluJb SINE Alu 1 289 -13 3196 197 57 40 chr9 14305814 14306154 -103556473 + L1MA9 LINE L1 3833 4166 -1980 2457 130 21 108 chr9 14306153 14306720 -103555907 + L1MA9 LINE L1 5410 5928 -384 * 187 127 79 0 chr9 14306725 14306788 -103555839 + (TA)n Simple_repeat Simple_repeat 1 68 0 1724 163 66 11 chr9 14306804 14307166 -103555461 + L1MA9 LINE L1 5931 6312 0 275 333 23 0 chr9 14307414 14307501 -103555126 + MIR SINE MIR 64 152 -110 182 388 24 24 chr9 14309111 14309196 -103553431 + MIR3 SINE MIR 5 89 -119 334 285 120 19 chr9 14309261 14309419 -103553208 + MIR SINE MIR 62 235 -27 498 202 22 0 chr9 14312052 14312141 -103550486 + MER58C DNA MER1_type 125 215 0 1010 233 20 8 chr9 14312286 14312531 -103550096 + L1ME3 LINE L1 5901 6148 -14 441 291 40 38 chr9 14312608 14312966 -103549661 + L1MEc LINE L1 1440 1858 -718 256 246 0 0 chr9 14313065 14313122 -103549505 + L1ME3 LINE L1 6092 6148 -14 2411 190 38 14 chr9 14313199 14313700 -103548927 - LTR53 LTR ERVL -2 517 5 319 177 16 48 chr9 14315175 14315237 -103547390 + MER20 DNA MER1_type 1 60 -159 5247 70 4 3 chr9 14315244 14315935 -103546692 - L1PA7 LINE L1 0 6154 5463 1868 98 0 0 chr9 14315935 14316199 -103546428 - L1P3 LINE L1 -6173 288 25 599 247 0 77 chr9 14316199 14316393 -103546234 + MER20 DNA MER1_type 41 219 0 279 0 0 0 chr9 14316926 14316957 -103545670 + (A)n Simple_repeat Simple_repeat 1 31 0 782 308 82 30 chr9 14318181 14318509 -103544118 - MLT1I LTR MaLR -13 396 52 2031 133 7 3 chr9 14318935 14319237 -103543390 - AluSc SINE Alu -6 303 1 238 313 157 15 chr9 14319624 14319892 -103542735 + L1MC/D LINE L1 5324 5629 -2179 2725 26 3 0 chr9 14320067 14320377 -103542250 + AluY SINE Alu 1 311 0 3177 257 34 12 chr9 14320706 14321650 -103540977 + L1MEc LINE L1 35 999 -5397 2065 123 7 0 chr9 14321681 14321974 -103540653 + AluSx SINE Alu 1 295 -17 2429 237 31 45 chr9 14322152 14322358 -103540269 + L1MB1 LINE L1 3459 3666 -3899 1715 164 13 13 chr9 14322358 14322663 -103539964 + AluJb SINE Alu 1 305 -7 2429 237 31 45 chr9 14322663 14323284 -103539343 + L1MB1 LINE L1 3666 4288 -3277 21 0 0 0 chr9 14323543 14323564 -103539063 + AT_rich Low_complexity Low_complexity 1 21 0 861 246 43 5 chr9 14324123 14324334 -103538293 + MER20 DNA MER1_type 1 219 0 28 0 0 0 chr9 14324956 14324984 -103537643 + AT_rich Low_complexity Low_complexity 1 28 0 270 0 0 0 chr9 14326621 14326651 -103535976 + (TTA)n Simple_repeat Simple_repeat 1 30 0 6916 58 18 0 chr9 14326652 14327828 -103534799 - L1PA7 LINE L1 -18 6136 4953 13208 89 11 9 chr9 14327830 14329730 -103532897 + L1PA7 LINE L1 3053 4954 -1192 1332 285 86 22 chr9 14330096 14330552 -103532075 - MLT1H LTR MaLR 0 549 65 1111 138 0 0 chr9 14330568 14330720 -103531907 - AluSg/x SINE Alu -26 286 135 241 306 28 0 chr9 14330720 14330792 -103531835 - MLT1H LTR MaLR -472 77 4 184 280 0 20 chr9 14330844 14330894 -103531733 - L2 LINE L2 -15 3298 3250 1891 109 0 0 chr9 14330924 14331172 -103531455 + AluSg SINE Alu 40 287 -23 3567 196 32 2 chr9 14331195 14332355 -103530272 - L1MA8 LINE L1 -291 6000 4805 740 261 34 25 chr9 14332525 14332763 -103529864 + MIR SINE MIR 12 251 -11 6146 205 77 7 chr9 14332924 14334419 -103528208 + L1MB1 LINE L1 5047 6646 -919 2173 147 61 7 chr9 14334425 14334833 -103527794 + L1MB1 LINE L1 7158 7587 0 323 271 146 21 chr9 14335019 14335163 -103527464 + MIR SINE MIR 97 258 -4 321 248 71 26 chr9 14335404 14335517 -103527110 - MLT1L LTR MaLR -71 544 427 2064 142 0 0 chr9 14335533 14335829 -103526798 - AluSx SINE Alu -16 296 1 1562 221 82 16 chr9 14337294 14337732 -103524895 - MLT1C LTR MaLR 0 467 1 530 306 15 20 chr9 14338024 14338220 -103524407 - L2 LINE L2 -189 3083 2889 264 316 106 80 chr9 14338821 14339058 -103523569 + L2 LINE L2 3030 3272 0 226 260 13 13 chr9 14341343 14341420 -103521207 - L1MC4 LINE L1 -40 8002 7926 227 91 0 45 chr9 14341432 14341476 -103521151 + (TAGA)n Simple_repeat Simple_repeat 2 43 0 2298 243 124 75 chr9 14341476 14342859 -103519768 - L1MC4 LINE L1 -133 7909 6460 609 165 39 0 chr9 14343711 14343814 -103518813 - Tigger1 DNA MER2_type 0 2418 2312 12533 137 23 19 chr9 14343815 14343923 -103518704 - Tigger1 DNA MER2_type -348 2070 1964 1875 119 0 11 chr9 14343923 14344200 -103518427 - AluSx SINE Alu 0 312 39 12533 137 23 19 chr9 14344200 14346152 -103516475 - Tigger1 DNA MER2_type -454 1964 2 615 305 114 39 chr9 14347761 14348169 -103514458 + L2 LINE L2 2812 3261 -52 2098 142 5 45 chr9 14348169 14348549 -103514078 - MLT1A1 LTR MaLR 0 365 1 615 305 114 39 chr9 14348549 14348605 -103514022 + L2 LINE L2 3261 3311 -2 1393 197 42 39 chr9 14349450 14349789 -103512838 + Tigger7 DNA MER2_type 1 2491 0 245 308 34 60 chr9 14349796 14349913 -103512714 - MIR3 SINE MIR -4 204 91 198 0 0 0 chr9 14350173 14350195 -103512432 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 2069 129 60 20 chr9 14350863 14351212 -103511415 - THE1B LTR MaLR 0 364 2 197 305 95 0 chr9 14351234 14351329 -103511298 - L2 LINE L2 -1 3271 3168 504 189 36 18 chr9 14351405 14351516 -103511111 + L1ME3 LINE L1 6020 6132 -30 2472 54 0 10 chr9 14351815 14352110 -103510517 + AluY SINE Alu 2 293 -18 237 251 70 87 chr9 14354024 14354193 -103508434 + MIR SINE MIR 21 192 -63 252 281 86 55 chr9 14354740 14354868 -103507759 + MIR SINE MIR 40 171 -91 308 179 80 19 chr9 14355011 14355173 -103507454 + (TA)n Simple_repeat Simple_repeat 1 172 0 5949 172 18 4 chr9 14355267 14356460 -103506167 - L1MC1 LINE L1 -6 6396 5187 * 19822 192 31 14 chr9 14356449 14359362 -103503265 - L1PA13 LINE L1 0 6814 3952 450 0 0 0 chr9 14359362 14359412 -103503215 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 19822 192 31 14 chr9 14359412 14363174 -103499453 - L1PA13 LINE L1 -2862 3952 2 2766 260 41 3 chr9 14363190 14364064 -103498563 - L1MC1 LINE L1 -1010 5205 4295 4288 40 4 0 chr9 14364064 14364586 -103498041 - L1PA4 LINE L1 -1 6154 5631 9006 27 7 0 chr9 14364586 14365891 -103496736 + L1PA4 LINE L1 4298 5607 -548 7438 241 33 15 chr9 14365892 14368301 -103494326 - L1MC1 LINE L1 -1898 4317 1914 292 318 40 0 chr9 14368980 14369106 -103493521 + MIR SINE MIR 88 218 -44 309 330 11 0 chr9 14369625 14369719 -103492908 + L2 LINE L2 3217 3311 -2 300 345 40 7 chr9 14369760 14369908 -103492719 - MIR SINE MIR -73 189 37 447 207 198 0 chr9 14369908 14370019 -103492608 + MER63 DNA MER1_type 1 759 -77 223 377 85 0 chr9 14371173 14371303 -103491324 + MIR3 SINE MIR 39 179 -29 594 254 169 0 chr9 14371706 14371883 -103490744 - MIR SINE MIR -6 256 50 431 319 108 11 chr9 14373424 14373573 -103489054 - MIR SINE MIR 0 262 90 7610 22 0 0 chr9 14373573 14374646 -103487981 - L1PA3 LINE L1 -1 6154 5093 431 319 108 11 chr9 14374646 14374681 -103487946 - MIR SINE MIR -172 90 60 435 198 0 41 chr9 14375578 14375750 -103486877 + (TA)n Simple_repeat Simple_repeat 2 166 0 415 236 12 6 chr9 14375781 14376105 -103486522 + (TA)n Simple_repeat Simple_repeat 1 326 0 917 221 47 50 chr9 14376120 14376379 -103486248 - L1ME3A LINE L1 -10 6160 5901 1448 151 62 127 chr9 14376379 14376750 -103485877 + MER7A DNA MER2_type 1 345 -1 917 221 47 50 chr9 14376750 14376789 -103485838 - L1ME3A LINE L1 -269 5901 5863 336 97 0 0 chr9 14377095 14377144 -103485483 + Alu SINE Alu 1 44 -256 1468 113 0 14 chr9 14377144 14377356 -103485271 + AluSg/x SINE Alu 92 300 -12 26 30 0 0 chr9 14377615 14377648 -103484979 + AT_rich Low_complexity Low_complexity 1 33 0 2098 125 46 25 chr9 14377710 14378077 -103484550 + THE1C LTR MaLR 1 375 0 226 322 101 20 chr9 14378769 14378918 -103483709 - MER117 DNA MER1_type -35 162 2 2620 178 36 27 chr9 14379415 14379998 -103482629 + L1MC3 LINE L1 7080 7667 -118 200 309 55 55 chr9 14380210 14380320 -103482307 + MIR3 SINE MIR 98 207 -1 369 62 0 0 chr9 14380903 14380951 -103481676 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 213 121 0 0 chr9 14381032 14381065 -103481562 + (TA)n Simple_repeat Simple_repeat 2 34 0 215 225 0 67 chr9 14381617 14381706 -103480921 + GA-rich Low_complexity Low_complexity 1 83 0 210 385 67 0 chr9 14382408 14382512 -103480115 + L2 LINE L2 3152 3262 -10 293 307 57 0 chr9 14383294 14383382 -103479245 - L2 LINE L2 0 3313 3221 759 296 120 29 chr9 14384000 14384351 -103478276 - MLT1I LTR MaLR -11 398 16 184 282 0 0 chr9 14386379 14386418 -103476209 - L2 LINE L2 -12 3301 3263 * 226 268 98 102 chr9 14386386 14386632 -103475995 - MIR SINE MIR -13 249 5 702 294 24 37 chr9 14386671 14387048 -103475579 + L1M4 LINE L1 3521 3892 -2254 2519 149 38 5 chr9 14387184 14387665 -103474962 + L1MA6 LINE L1 5219 5716 -584 631 191 0 8 chr9 14387665 14387794 -103474833 + L1MA6 LINE L1 6170 6299 -1 2519 149 38 5 chr9 14387794 14387808 -103474819 + L1MA6 LINE L1 5716 5728 -572 300 306 103 41 chr9 14387849 14388091 -103474536 + L1M4 LINE L1 4113 4369 -1777 267 222 156 11 chr9 14388269 14388359 -103474268 + L2 LINE L2 3195 3297 -16 339 306 66 73 chr9 14388380 14388560 -103474067 + L1M4 LINE L1 4748 4927 -1219 2366 77 0 17 chr9 14388560 14388860 -103473767 + AluY SINE Alu 1 295 -16 339 306 66 73 chr9 14388860 14388967 -103473660 + L1M4 LINE L1 4927 5033 -1113 293 274 122 43 chr9 14389871 14390035 -103472592 + MIR SINE MIR 7 183 -79 234 281 135 0 chr9 14390991 14391087 -103471540 - L2 LINE L2 0 3313 3205 407 303 61 40 chr9 14391388 14391586 -103471041 - MIR SINE MIR -18 244 43 462 360 32 28 chr9 14392228 14392481 -103470146 + MIR SINE MIR 8 261 -1 436 223 39 10 chr9 14394711 14394814 -103467813 - MER58 DNA MER1_type -57 284 179 840 267 63 10 chr9 14394864 14395167 -103467460 - L1ME LINE L1 -297 5824 5506 218 280 70 108 chr9 14396356 14396542 -103466085 + L2 LINE L2 2699 2877 -437 437 128 0 51 chr9 14396644 14396722 -103465905 + L1MC2 LINE L1 6247 6320 -24 263 254 17 0 chr9 14397144 14397203 -103465424 - MIR SINE MIR -2 260 201 685 223 137 25 chr9 14397524 14397721 -103464906 + MIR SINE MIR 23 241 -21 1982 134 10 22 chr9 14398180 14398493 -103464134 - AluSc SINE Alu 0 309 1 693 219 152 19 chr9 14398844 14399100 -103463527 + MER102a DNA MER1_type 40 329 -1 241 299 39 0 chr9 14399426 14399503 -103463124 + MIR SINE MIR 109 188 -74 301 317 89 0 chr9 14400233 14400334 -103462293 + L2 LINE L2 3199 3308 -5 995 171 0 43 chr9 14400421 14400597 -103462030 - AluJo SINE Alu -8 304 135 1517 181 0 55 chr9 14400597 14400759 -103461868 - AluJo SINE Alu -20 292 153 1874 140 42 3 chr9 14400759 14401044 -103461583 - AluSx SINE Alu -16 296 1 1517 181 0 55 chr9 14401044 14401190 -103461437 - AluJo SINE Alu -159 153 1 21 0 0 0 chr9 14401635 14401656 -103460971 + AT_rich Low_complexity Low_complexity 1 21 0 2011 125 29 0 chr9 14402166 14402446 -103460181 - AluSx SINE Alu -24 288 1 1253 260 108 39 chr9 14402895 14403106 -103459521 - MLT1G LTR MaLR -18 572 377 8588 104 16 41 chr9 14403106 14404426 -103458201 - HSMAR1 DNA Mariner 0 1287 1 1253 260 108 39 chr9 14404426 14404749 -103457878 - MLT1G LTR MaLR -213 377 1 396 306 73 8 chr9 14405063 14405311 -103457316 + L1ME4a LINE L1 5604 5867 -254 31 26 0 0 chr9 14405517 14405555 -103457072 + AT_rich Low_complexity Low_complexity 1 38 0 218 160 0 40 chr9 14405631 14405681 -103456946 + A-rich Low_complexity Low_complexity 3 50 0 1340 236 48 37 chr9 14405851 14406313 -103456314 + MLT1C LTR MaLR 1 467 0 44 0 0 0 chr9 14406892 14406936 -103455691 + AT_rich Low_complexity Low_complexity 1 44 0 2007 144 3 0 chr9 14407035 14407326 -103455301 - AluSx SINE Alu -13 299 8 319 247 20 25 chr9 14407386 14407576 -103455051 - L1ME LINE L1 -303 5818 5562 1245 212 89 9 chr9 14407666 14407982 -103454645 - MER58B DNA MER1_type 0 341 1 21 0 0 0 chr9 14409765 14409786 -103452841 + AT_rich Low_complexity Low_complexity 1 21 0 1623 170 71 14 chr9 14412086 14412368 -103450259 - AluJb SINE Alu -14 298 1 442 258 25 42 chr9 14412375 14412495 -103450132 - MER5A DNA MER1_type -11 178 61 7275 67 9 1 chr9 14412504 14414238 -103448389 - L1PA6 LINE L1 0 6154 4395 1053 155 0 6 chr9 14417983 14418144 -103444483 - AluSq SINE Alu -153 160 1 240 278 0 0 chr9 14418683 14418737 -103443890 + GA-rich Low_complexity Low_complexity 4 57 0 242 324 0 14 chr9 14418993 14419067 -103443560 - MER5B DNA MER1_type -80 98 26 325 296 111 25 chr9 14421258 14421437 -103441190 + MIR SINE MIR 41 234 -28 326 258 151 63 chr9 14422810 14422969 -103439658 + L2 LINE L2 3137 3309 -4 265 283 131 21 chr9 14423057 14423202 -103439425 - MIR SINE MIR -53 209 49 2499 161 11 36 chr9 14424994 14425466 -103437161 + MLT1C LTR MaLR 5 464 -3 295 267 59 59 chr9 14426035 14426222 -103436405 + LTR16A LTR ERVL 1 183 -267 1091 374 50 4 chr9 14426222 14427049 -103435578 - HERV16 LTR ERVL -776 4988 4124 318 296 70 0 chr9 14427074 14427189 -103435438 - HERV16 LTR ERVL -2020 3465 3343 395 282 34 0 chr9 14427374 14427491 -103435136 - HERV16 LTR ERVL -2496 3158 3038 1573 328 52 20 chr9 14427828 14429077 -103433550 - HERV16 LTR ERVL -2649 3005 1709 264 215 215 0 chr9 14429587 14429666 -103432961 - HERV16 LTR ERVL -3967 1029 934 1086 324 45 22 chr9 14429890 14430445 -103432182 - HERV16 LTR ERVL -4316 680 110 986 244 136 12 chr9 14430445 14430777 -103431850 - MLT1A2 LTR MaLR -1 373 1 1086 324 45 22 chr9 14430777 14430798 -103431829 - HERV16 LTR ERVL -4886 110 91 882 283 75 44 chr9 14430856 14431269 -103431358 - LTR16A LTR ERVL -8 442 17 240 273 0 30 chr9 14432752 14432818 -103429809 + L2 LINE L2 2230 2293 -1021 206 400 57 0 chr9 14432891 14432996 -103429631 + L2 LINE L2 2564 2674 -640 1468 107 0 0 chr9 14433080 14433267 -103429360 + AluY SINE Alu 1 187 -124 324 67 0 33 chr9 14433271 14433331 -103429296 + AluSp/q SINE Alu 246 303 0 1342 177 61 49 chr9 14433655 14434109 -103428518 + MLT2B3 LTR ERVL 1 554 0 306 0 0 0 chr9 14434124 14434158 -103428469 + (T)n Simple_repeat Simple_repeat 1 34 0 344 188 9 27 chr9 14436799 14436911 -103425716 + (TA)n Simple_repeat Simple_repeat 2 111 0 616 348 45 44 chr9 14437108 14437663 -103424964 + L2 LINE L2 2720 3276 -37 1946 142 0 3 chr9 14438112 14438400 -103424227 - AluSx SINE Alu -25 287 1 182 194 0 0 chr9 14438698 14438729 -103423898 + L2 LINE L2 3240 3270 -2 182 234 0 109 chr9 14438879 14438943 -103423684 - L3 LINE CR1 -124 1453 1397 323 301 83 19 chr9 14439511 14439667 -103422960 - MIR SINE MIR -6 256 91 198 0 0 0 chr9 14440402 14440424 -103422203 + (CA)n Simple_repeat Simple_repeat 1 22 0 289 261 9 18 chr9 14441547 14441658 -103420969 - L1ME2 LINE L1 -216 5948 5839 199 273 0 61 chr9 14442853 14442919 -103419708 - L2 LINE L2 -1 3271 3210 393 276 147 6 chr9 14444273 14444443 -103418184 - MIR SINE MIR -3 259 66 12528 136 40 40 chr9 14444746 14445270 -103417357 + Tigger1 DNA MER2_type 52 575 -1843 4804 109 18 20 chr9 14445270 14445597 -103417030 - L1MA2 LINE L1 -1 6303 5977 1315 120 65 5 chr9 14445597 14445814 -103416813 - MER30 DNA MER1_type 0 230 1 4804 109 18 20 chr9 14445814 14446272 -103416355 - L1MA2 LINE L1 -327 5977 5520 12528 136 40 40 chr9 14446272 14447906 -103414721 + Tigger1 DNA MER2_type 575 2211 -207 1532 146 0 0 chr9 14447906 14448119 -103414508 + AluSx SINE Alu 24 236 -76 12528 136 40 40 chr9 14448119 14448327 -103414300 + Tigger1 DNA MER2_type 2211 2418 0 391 300 31 86 chr9 14449312 14449602 -103413025 - L1ME4a LINE L1 -214 5907 5634 1878 152 44 0 chr9 14449676 14449972 -103412655 - AluSx SINE Alu -3 309 1 230 316 0 21 chr9 14452927 14453022 -103409605 + GA-rich Low_complexity Low_complexity 6 98 0 378 0 0 0 chr9 14453193 14453235 -103409392 + (CA)n Simple_repeat Simple_repeat 1 42 0 910 179 112 45 chr9 14453600 14453823 -103408804 - MER8 DNA MER2_type 0 239 2 212 364 0 0 chr9 14454292 14454358 -103408269 - MIR SINE MIR -67 141 76 565 200 7 22 chr9 14454466 14454601 -103408026 + L1MB5 LINE L1 6041 6173 -1 198 294 0 0 chr9 14454958 14455009 -103407618 + L2 LINE L2 3250 3300 -13 877 182 21 74 chr9 14455390 14455513 -103407114 - L1MB1 LINE L1 -242 5926 5821 1771 167 3 33 chr9 14455513 14455819 -103406808 + AluSx SINE Alu 1 297 -15 877 182 21 74 chr9 14455819 14455937 -103406690 - L1MB1 LINE L1 -347 5821 5698 1324 139 0 18 chr9 14455951 14456174 -103406453 + THE1B LTR MaLR 1 219 -145 15409 133 20 57 chr9 14456193 14459234 -103403393 + L1PA7 LINE L1 12 2939 -3207 7040 39 15 1 chr9 14459234 14460095 -103402532 + L1PA4 LINE L1 5274 6155 0 * 18030 71 11 7 chr9 14460088 14463320 -103399307 + L1PA7 LINE L1 2913 6153 -1 777 114 18 1 chr9 14463428 14463563 -103399064 + THE1A LTR MaLR 220 355 0 1468 217 50 29 chr9 14463931 14464374 -103398253 + MER63C DNA MER1_type 1 452 -478 548 173 62 6 chr9 14464392 14464554 -103398073 + MER63C DNA MER1_type 675 845 -85 475 326 88 19 chr9 14465038 14465357 -103397270 + L1M4 LINE L1 3604 3944 -2202 785 130 12 80 chr9 14465487 14465649 -103396978 + MER5A DNA MER1_type 3 153 -36 1642 213 27 12 chr9 14465650 14466058 -103396569 - MER63C DNA MER1_type 0 931 518 794 274 42 9 chr9 14466058 14466273 -103396354 - MER58A DNA MER1_type -2 222 1 * 1081 234 54 24 chr9 14466273 14466630 -103395997 - MER63C DNA MER1_type -409 521 154 455 311 73 43 chr9 14466659 14467054 -103395573 + L1M4 LINE L1 4142 4548 -1598 505 301 96 50 chr9 14467490 14468108 -103394519 - L1MC4a LINE L1 -1833 5975 5330 413 339 94 29 chr9 14468613 14468996 -103393631 - L2 LINE L2 -259 3054 2653 417 294 54 20 chr9 14469331 14469562 -103393065 - MLT1J1 LTR MaLR -228 283 4 414 273 41 16 chr9 14469587 14469708 -103392919 - MIR SINE MIR -130 132 9 851 240 62 0 chr9 14469828 14470036 -103392591 + MER58A DNA MER1_type 4 224 0 1206 236 62 23 chr9 14472419 14472808 -103389819 - MER74B LTR ERVL -77 545 142 364 363 44 0 chr9 14473195 14473355 -103389272 + MIR SINE MIR 29 195 -67 180 263 165 23 chr9 14474471 14474604 -103388023 + L3 LINE CR1 1105 1256 -321 644 327 125 38 chr9 14478723 14479655 -103382972 + L2 LINE L2 2233 3272 0 1059 264 132 2 chr9 14480415 14480809 -103381818 - LTR16A1 LTR ERVL -12 445 1 2071 110 24 81 chr9 14483144 14483304 -103379323 + THE1B LTR MaLR 4 172 -192 2205 126 0 0 chr9 14483304 14483598 -103379029 - AluSp SINE Alu -14 299 6 2071 110 24 81 chr9 14483598 14483820 -103378807 + THE1B LTR MaLR 172 364 0 456 279 207 8 chr9 14483921 14484172 -103378455 - L1MC/D LINE L1 -2168 5640 5340 1977 203 68 0 chr9 14484914 14485313 -103377314 + MSTB LTR MaLR 1 426 0 8054 190 18 11 chr9 14485313 14486948 -103375679 + MSTB-int LTR MaLR 1 1646 -5 2211 182 65 2 chr9 14486953 14487354 -103375273 + MSTB LTR MaLR 1 426 0 457 174 20 20 chr9 14488329 14488427 -103374200 - MLT1A1 LTR MaLR -267 98 1 562 301 76 10 chr9 14488768 14489057 -103373570 + HAL1 LINE L1 13 320 -2187 408 213 19 38 chr9 14489605 14489765 -103372862 - L1MC4 LINE L1 -195 7847 7691 226 254 261 8 chr9 14490260 14490394 -103372233 + MIR SINE MIR 48 215 -47 332 313 67 17 chr9 14491194 14491347 -103371280 - L1MEd LINE L1 -3324 2805 2661 1148 247 0 8 chr9 14491347 14491586 -103371041 + MER8 DNA MER2_type 1 237 -2 332 313 67 17 chr9 14491586 14491777 -103370850 - L1MEd LINE L1 -3468 2661 2444 233 331 38 12 chr9 14492427 14492587 -103370040 - HAL1 LINE L1 -937 1570 1407 1795 290 91 32 chr9 14492592 14493725 -103368902 - L1MEd LINE L1 -4862 1257 58 6800 129 52 5 chr9 14494209 14495385 -103367242 - Tigger3b DNA MER2_type 0 1231 1 1130 154 10 5 chr9 14495550 14495751 -103366876 + L1PA16 LINE L1 5949 6150 -16 1608 206 7 17 chr9 14495815 14496107 -103366520 + AluJo SINE Alu 1 289 -23 656 348 165 30 chr9 14496605 14497477 -103365150 + L2 LINE L2 1768 2757 -557 252 301 12 24 chr9 14497502 14497595 -103365032 - MER5A DNA MER1_type -73 116 14 271 392 97 17 chr9 14497746 14497922 -103364705 + L2 LINE L2 2902 3091 -181 195 336 42 17 chr9 14498134 14498253 -103364374 + MIR3 SINE MIR 46 167 -41 627 210 51 27 chr9 14498270 14498527 -103364100 - L1MC5 LINE L1 -34 7927 7665 2090 164 11 14 chr9 14498647 14499012 -103363615 + THE1B LTR MaLR 1 364 0 10414 106 29 29 chr9 14499012 14500591 -103362036 + THE1B-int LTR MaLR 1 1579 -1 1944 137 84 23 chr9 14500592 14500935 -103361692 + THE1B LTR MaLR 1 364 0 227 131 66 49 chr9 14501180 14501241 -103361386 + MLT1I LTR MaLR 316 377 -32 2963 233 38 24 chr9 14501343 14502287 -103360340 - L1ME2 LINE L1 -12 6152 5195 242 197 70 14 chr9 14502336 14502407 -103360220 - L1MD1 LINE L1 -94 6148 6074 24 53 0 0 chr9 14502414 14502452 -103360175 + AT_rich Low_complexity Low_complexity 1 38 0 1748 247 115 37 chr9 14502556 14504032 -103358595 + L1ME1 LINE L1 4577 6161 -5 478 190 10 20 chr9 14504725 14504825 -103357802 - MIR SINE MIR -70 192 94 2681 10 3 0 chr9 14505432 14505727 -103356900 + AluY SINE Alu 1 296 -15 342 223 18 9 chr9 14505944 14506056 -103356571 + GA-rich Low_complexity Low_complexity 3 115 0 277 316 59 37 chr9 14506145 14506281 -103356346 + MIR SINE MIR 78 216 -46 198 0 0 0 chr9 14507493 14507515 -103355112 + (CAT)n Simple_repeat Simple_repeat 2 23 0 426 314 38 35 chr9 14507885 14508093 -103354534 + MIR SINE MIR 5 216 -46 2046 138 21 13 chr9 14508098 14508481 -103354146 - Charlie5 DNA MER1_type 0 2619 2234 682 158 0 0 chr9 14508485 14508599 -103354028 - MER3 DNA MER1_type -41 168 55 233 213 21 0 chr9 14508601 14508648 -103353979 + MIR SINE MIR 203 250 -12 5633 163 71 17 chr9 14509057 14511073 -103351554 + L1MA7 LINE L1 4133 6258 -33 1407 189 84 0 chr9 14513342 14513617 -103349010 - LTR40a LTR ERVL 0 519 222 25 51 0 0 chr9 14513841 14513880 -103348747 + AT_rich Low_complexity Low_complexity 1 39 0 388 313 110 57 chr9 14513950 14514177 -103348450 - MIR SINE MIR -23 239 1 2717 107 8 0 chr9 14514460 14514845 -103347782 + L1PA15 LINE L1 5773 6160 -5 2655 22 0 22 chr9 14516177 14516495 -103346132 + AluY SINE Alu 1 311 0 309 313 156 36 chr9 14516854 14517046 -103345581 - MIR SINE MIR -46 216 2 567 296 60 28 chr9 14517983 14518199 -103344428 - MIR SINE MIR -11 251 29 336 230 55 145 chr9 14519514 14519714 -103342913 - MIR SINE MIR 0 262 81 228 288 68 83 chr9 14519882 14520014 -103342613 - L2 LINE L2 0 3272 3143 303 294 184 28 chr9 14520226 14520444 -103342183 - MIR SINE MIR -5 257 6 1821 209 9 4 chr9 14520784 14521132 -103341495 - MLT1A1 LTR MaLR 0 365 1 229 338 0 0 chr9 14522157 14522234 -103340393 - MIR SINE MIR -6 256 180 228 325 63 8 chr9 14522652 14522778 -103339849 + MER5A DNA MER1_type 13 145 -44 1259 276 147 58 chr9 14523102 14524270 -103338357 - HAL1 LINE L1 -6 2501 1230 280 304 95 48 chr9 14524614 14524782 -103337845 + MER5B DNA MER1_type 2 177 -1 246 241 277 27 chr9 14526791 14526903 -103335724 - MIR SINE MIR -70 192 53 22 35 0 0 chr9 14527028 14527057 -103335570 + AT_rich Low_complexity Low_complexity 1 29 0 201 214 0 36 chr9 14528366 14528422 -103334205 + (CATATA)n Simple_repeat Simple_repeat 1 54 0 342 303 76 14 chr9 14528523 14528668 -103333959 - MIR SINE MIR -61 201 48 2304 65 3 3 chr9 14530070 14530363 -103332264 + AluY SINE Alu 19 311 0 293 170 0 0 chr9 14530393 14530446 -103332181 - L1MB7 LINE L1 -65 6119 6067 533 239 83 61 chr9 14530449 14530713 -103331914 + MER113 DNA MER1_type? 131 400 -121 441 258 148 105 chr9 14530963 14531192 -103331435 + MLT1G LTR MaLR 348 581 -9 439 281 7 22 chr9 14531209 14531344 -103331283 - MER94 DNA DNA 0 134 2 22 0 0 0 chr9 14531537 14531559 -103331068 + AT_rich Low_complexity Low_complexity 1 22 0 780 239 53 5 chr9 14531827 14532015 -103330612 - MIR SINE MIR -50 212 16 7301 173 55 20 chr9 14532427 14534923 -103327704 - L1MA5 LINE L1 0 7362 4779 2391 159 14 42 chr9 14534923 14535312 -103327315 - MSTC LTR MaLR -2 426 49 1688 167 35 0 chr9 14535312 14535599 -103327028 + AluJb SINE Alu 1 297 -15 2391 159 14 42 chr9 14535599 14535643 -103326984 - MSTC LTR MaLR -379 49 5 2327 203 28 4 chr9 14535647 14536154 -103326473 - L1MA5 LINE L1 -2423 4785 4267 854 192 13 6 chr9 14536200 14536356 -103326271 + Tigger1 DNA MER2_type 1 157 -2261 * 1100 143 64 0 chr9 14536345 14536548 -103326079 + Tigger1 DNA MER2_type 2202 2417 -1 4104 189 33 42 chr9 14536550 14537435 -103325192 - L1MA5 LINE L1 -2988 4220 3347 2315 48 48 10 chr9 14537435 14537729 -103324898 - AluY SINE Alu -4 307 3 4104 189 33 42 chr9 14537729 14538040 -103324587 - L1MA5 LINE L1 -3861 3347 3035 3520 173 80 1 chr9 14538050 14538715 -103323912 - Tigger1 DNA MER2_type 0 2418 1702 1274 142 28 5 chr9 14538725 14538937 -103323690 - Tigger1 DNA MER2_type -2178 240 24 2700 175 55 18 chr9 14538942 14539137 -103323490 - L1MA5 LINE L1 -4186 3023 2837 1812 165 7 16 chr9 14539137 14539446 -103323181 - AluJb SINE Alu -4 308 3 2700 175 55 18 chr9 14539446 14539798 -103322829 - L1MA5 LINE L1 -4372 2837 2456 1845 283 109 41 chr9 14539792 14540788 -103321839 - L1MA5 LINE L1 -5525 1684 1 * 1990 128 3 7 chr9 14540878 14541166 -103321461 + AluSx SINE Alu 1 287 -25 655 245 131 38 chr9 14541624 14541861 -103320766 - MIR SINE MIR 0 262 4 21 36 0 0 chr9 14542495 14542523 -103320104 + AT_rich Low_complexity Low_complexity 1 28 0 440 257 92 18 chr9 14545180 14545345 -103317282 - MIR SINE MIR -44 218 47 3984 87 0 9 chr9 14545500 14546051 -103316576 + L1PA7 LINE L1 5609 6154 0 362 360 74 0 chr9 14546732 14546907 -103315720 + MIR SINE MIR 1 188 -74 467 304 91 42 chr9 14546941 14547236 -103315391 + MLT1J LTR MaLR 17 297 -149 531 304 90 36 chr9 14547543 14547931 -103314696 + MLT1J2 LTR MaLR 17 425 -25 11912 201 51 24 chr9 14548685 14553401 -103309226 + L1M3 LINE L1 17 4900 -1519 7268 47 0 1 chr9 14553401 14554330 -103308297 + L1PA6 LINE L1 5222 6149 -5 11912 201 51 24 chr9 14554330 14555129 -103307498 + L1M3 LINE L1 4900 5676 -743 869 145 8 0 chr9 14555130 14555254 -103307373 + FLAM_C SINE Alu 1 125 -18 31 0 0 0 chr9 14555254 14555285 -103307342 + AT_rich Low_complexity Low_complexity 1 31 0 196 286 214 0 chr9 14555437 14555549 -103307078 - MIR SINE MIR 0 262 127 316 311 54 24 chr9 14555562 14555729 -103306898 - MIR SINE MIR -60 202 31 2749 216 10 0 chr9 14556500 14557119 -103305508 - L1P LINE L1 -3048 3098 2474 2157 129 3 0 chr9 14557184 14557495 -103305132 + AluSx SINE Alu 1 312 0 185 326 22 45 chr9 14557881 14557970 -103304657 - L2 LINE L2 0 3272 3186 251 285 38 111 chr9 14558404 14558639 -103303988 - MIR SINE MIR -28 234 17 5562 122 20 2 chr9 14559047 14559892 -103302735 + L1PA15 LINE L1 5294 6153 -12 622 298 57 20 chr9 14564372 14564620 -103298007 - MIR SINE MIR -1 261 5 547 276 138 0 chr9 14565861 14566042 -103296585 - MIR SINE MIR 0 262 57 1570 125 153 3 chr9 14566558 14566853 -103295774 + MER44D DNA MER2_type 1 609 0 938 209 6 11 chr9 14566949 14567319 -103295308 + GA-rich Low_complexity Low_complexity 1 368 0 535 264 0 0 chr9 14567969 14568090 -103294537 - MER94 DNA DNA -10 124 4 322 275 69 15 chr9 14568162 14568293 -103294334 + MIR SINE MIR 75 212 -50 204 398 79 45 chr9 14569876 14570296 -103292331 + L2 LINE L2 2831 3264 -8 202 300 38 25 chr9 14570323 14570403 -103292224 + MIR3 SINE MIR 9 89 -119 2234 248 45 45 chr9 14570412 14571260 -103291367 + L1M4 LINE L1 3356 4203 -1943 7114 50 7 0 chr9 14571420 14572995 -103289632 + L1PA5 LINE L1 4568 6148 -6 418 204 21 175 chr9 14573475 14573715 -103288912 - MIR SINE MIR -6 256 54 332 272 15 92 chr9 14573736 14573942 -103288685 + L1MC5 LINE L1 7736 7925 -36 1801 57 0 4 chr9 14574560 14574787 -103287840 - AluY SINE Alu 0 311 86 235 251 166 91 chr9 14574893 14575080 -103287547 + MIR SINE MIR 28 228 -34 2042 199 18 0 chr9 14576631 14577087 -103285540 - MLT2B1 LTR ERVL 0 520 5 296 397 55 0 chr9 14577171 14577317 -103285310 + MER91A DNA MER1_type 21 174 -22 489 152 45 15 chr9 14577797 14577999 -103284628 - MER58B DNA MER1_type 0 341 72 3554 123 53 10 chr9 14578009 14578338 -103284289 - L1PB4 LINE L1 -20 6136 5770 473 31 0 16 chr9 14578338 14578402 -103284225 + (TG)n Simple_repeat Simple_repeat 2 64 0 3554 123 53 10 chr9 14578402 14578656 -103283971 - L1PB4 LINE L1 -386 5770 5528 245 163 47 0 chr9 14578659 14578702 -103283925 - MER58B DNA MER1_type -253 88 44 604 270 72 14 chr9 14578990 14579289 -103283338 + MLT1J2 LTR MaLR 1 332 -118 206 163 61 0 chr9 14579758 14579807 -103282820 - L3 LINE CR1 -334 1243 1192 437 364 61 4 chr9 14580259 14580490 -103282137 + MIR SINE MIR 19 262 0 * 439 253 101 13 chr9 14580455 14580613 -103282014 - MIR SINE MIR -79 183 12 636 221 101 40 chr9 14581234 14581410 -103281217 + MIR SINE MIR 31 222 -40 2199 119 0 0 chr9 14581410 14581712 -103280915 - AluSq SINE Alu -11 302 1 636 221 101 40 chr9 14581712 14581734 -103280893 + MIR SINE MIR 222 241 -21 207 127 0 56 chr9 14582343 14582414 -103280213 + (TTA)n Simple_repeat Simple_repeat 1 67 0 180 0 0 0 chr9 14582822 14582842 -103279785 + (A)n Simple_repeat Simple_repeat 1 20 0 359 377 41 0 chr9 14584485 14584631 -103277996 + L2 LINE L2 3121 3272 0 23 0 0 0 chr9 14586491 14586514 -103276113 + AT_rich Low_complexity Low_complexity 1 23 0 234 281 78 0 chr9 14587708 14587772 -103274855 + MIR3 SINE MIR 114 182 -26 1436 105 0 0 chr9 14588120 14588311 -103274316 - LOR1a LTR ERV1 0 497 307 288 307 11 0 chr9 14588768 14588856 -103273771 - MIR3 SINE MIR 0 208 120 431 316 65 39 chr9 14639316 14639623 -103223004 - L1M4 LINE L1 -1085 5061 4747 481 316 61 70 chr9 14639650 14640062 -103222565 - L1M4 LINE L1 -2215 3931 3524 285 296 139 0 chr9 14640763 14640871 -103221756 - MER5C DNA MER1_type -201 123 1 1898 171 0 3 chr9 14641319 14641612 -103221015 - AluJo SINE Alu -20 292 1 22 35 0 0 chr9 14641849 14641878 -103220749 + AT_rich Low_complexity Low_complexity 1 29 0 268 281 22 0 chr9 14642288 14642377 -103220250 - L1ME LINE L1 -306 5815 5725 12725 153 17 22 chr9 14644036 14646303 -103216324 + Tigger1 DNA MER2_type 1 2254 -164 919 161 6 0 chr9 14646407 14646568 -103216059 - MLT1A2 LTR MaLR -212 162 1 541 281 64 10 chr9 14647861 14648064 -103214563 + MIR SINE MIR 49 262 0 1012 280 37 11 chr9 14650585 14650939 -103211688 - L1MC4a LINE L1 -1950 5858 5496 903 295 120 35 chr9 14651175 14651749 -103210878 - L2 LINE L2 -4 3309 2696 2002 136 3 0 chr9 14651763 14652049 -103210578 - AluSx SINE Alu -25 287 1 675 319 32 39 chr9 14652060 14652155 -103210472 - L2 LINE L2 -768 2546 2452 3711 138 3 0 chr9 14652155 14652727 -103209900 + L1PA16 LINE L1 5584 6157 -9 675 319 32 39 chr9 14652727 14652941 -103209686 - L2 LINE L2 -862 2452 2239 228 271 176 0 chr9 14652962 14653047 -103209580 - MIR SINE MIR -57 205 106 819 134 0 0 chr9 14653170 14653289 -103209338 + AluSg/x SINE Alu 190 308 -4 281 320 95 35 chr9 14653900 14654100 -103208527 + MIR SINE MIR 50 261 -1 39 38 0 0 chr9 14654274 14654327 -103208300 + AT_rich Low_complexity Low_complexity 1 53 0 258 287 19 19 chr9 14654411 14654519 -103208108 - Charlie1 DNA MER1_type -299 2462 2355 1464 205 57 10 chr9 14655429 14655609 -103207018 - AluJb SINE Alu 0 312 111 1043 75 0 7 chr9 14655609 14655756 -103206871 + (TTTC)n Simple_repeat Simple_repeat 3 148 0 1464 205 57 10 chr9 14655756 14655873 -103206754 - AluJb SINE Alu -201 111 1 891 276 94 54 chr9 14655876 14656543 -103206084 - L2 LINE L2 -10 3303 2602 2185 72 52 0 chr9 14658565 14658855 -103203772 + AluSp SINE Alu 1 305 -8 454 229 76 0 chr9 14658957 14659062 -103203565 + MER94 DNA DNA 1 113 -21 2205 97 0 0 chr9 14659064 14659375 -103203252 + AluSq SINE Alu 1 311 0 364 295 180 0 chr9 14659433 14659572 -103203055 + MIR SINE MIR 65 228 -34 4473 132 4 25 chr9 14660446 14661130 -103201497 - HSMAR1 DNA Mariner -201 1086 417 15946 52 2 2 chr9 14661130 14663115 -103199512 + L1P LINE L1 622 2607 -3539 5397 38 0 2 chr9 14663250 14663860 -103198767 + L1PA4 LINE L1 5547 6155 0 2947 95 11 32 chr9 14663865 14663968 -103198659 - HSMAR1 DNA Mariner -854 433 329 1995 161 0 0 chr9 14663968 14664272 -103198355 - AluSx SINE Alu -8 304 1 2947 95 11 32 chr9 14664272 14664601 -103198026 - HSMAR1 DNA Mariner -958 329 10 279 337 43 27 chr9 14665318 14665505 -103197122 + MLT1J2 LTR MaLR 261 450 0 444 302 52 38 chr9 14665627 14665839 -103196788 - LTR16A LTR ERVL -220 230 16 290 340 14 14 chr9 14665978 14666125 -103196502 - HERVL LTR ERVL -327 5327 5181 694 346 57 15 chr9 14666226 14666818 -103195809 - HERVL LTR ERVL -498 4987 4500 1288 351 45 18 chr9 14666878 14667666 -103194961 - HERVL LTR ERVL -1283 4371 3613 323 337 127 39 chr9 14667665 14667870 -103194757 - HERV16 LTR ERVL -3189 1807 1585 * 361 121 17 0 chr9 14667909 14667967 -103194660 - LTR10B LTR ERV1 -2 545 487 652 312 5 0 chr9 14668260 14668459 -103194168 - HERV16 LTR ERVL -3677 1319 1120 714 320 46 12 chr9 14668490 14668749 -103193878 - LTR16A LTR ERVL -122 328 61 332 328 110 69 chr9 14668838 14669201 -103193426 + L2 LINE L2 2895 3272 0 294 146 0 0 chr9 14670176 14670231 -103192396 + LTR1 LTR ERV1 8 62 -723 189 0 0 0 chr9 14670233 14670254 -103192373 + (G)n Simple_repeat Simple_repeat 1 21 0 2840 105 5 5 chr9 14670356 14670765 -103191862 + LTR1 LTR ERV1 376 784 -1 369 275 116 7 chr9 14670892 14671030 -103191597 + MIR SINE MIR 82 234 -28 442 269 31 0 chr9 14671230 14671360 -103191267 + MIR SINE MIR 97 230 -32 405 104 15 30 chr9 14671797 14671864 -103190763 + L1MC1 LINE L1 6263 6328 -5 198 248 85 85 chr9 14672018 14672147 -103190480 - MIR SINE MIR -50 212 84 819 291 29 0 chr9 14672906 14673150 -103189477 - MIR SINE MIR 0 262 12 246 105 0 0 chr9 14673154 14673192 -103189435 + (TTCC)n Simple_repeat Simple_repeat 3 40 0 347 333 9 9 chr9 14674066 14674180 -103188447 + MIR3 SINE MIR 76 189 -19 286 56 19 37 chr9 14674517 14674571 -103188056 + (TTTG)n Simple_repeat Simple_repeat 4 56 0 2140 92 7 0 chr9 14674574 14674846 -103187781 - AluSx SINE Alu -37 275 2 328 309 41 24 chr9 14675522 14675645 -103186982 + MIR SINE MIR 21 145 -117 2271 94 0 7 chr9 14676091 14676388 -103186239 - AluSg SINE Alu -15 295 1 380 284 83 69 chr9 14676388 14676751 -103185876 - L1ME4a LINE L1 -292 5829 5462 23 0 0 0 chr9 14676757 14676780 -103185847 + AT_rich Low_complexity Low_complexity 1 23 0 252 302 145 19 chr9 14677435 14677594 -103185033 - MIR SINE MIR -12 250 72 2241 101 0 3 chr9 14678575 14678871 -103183756 + AluY SINE Alu 3 297 -14 220 233 0 0 chr9 14678942 14678985 -103183642 + MIR SINE MIR 216 258 -4 348 243 6 127 chr9 14679322 14679495 -103183132 + L2 LINE L2 3112 3263 -50 333 365 74 17 chr9 14679969 14680199 -103182428 - MLT1J LTR MaLR -23 488 246 399 266 24 16 chr9 14680242 14680366 -103182261 - MLT1J LTR MaLR -328 183 59 277 356 0 0 chr9 14681059 14681174 -103181453 + CT-rich Low_complexity Low_complexity 2 116 0 1840 230 42 20 chr9 14681687 14682135 -103180492 + MER70A LTR ERVL 15 472 0 189 366 14 0 chr9 14682293 14682364 -103180263 + MIR SINE MIR 69 140 -122 873 307 71 24 chr9 14682625 14683006 -103179621 - MLT1I LTR MaLR -10 399 1 509 276 110 12 chr9 14683534 14683697 -103178930 + MIR3 SINE MIR 24 202 -6 372 225 90 11 chr9 14684444 14684533 -103178094 + MIR SINE MIR 85 180 -82 2189 117 0 3 chr9 14684925 14685225 -103177402 - AluSx SINE Alu -11 301 3 468 155 14 0 chr9 14686198 14686269 -103176358 - AluJ/FLAM SINE Alu -236 76 5 998 170 0 50 chr9 14686333 14686533 -103176094 - AluJo SINE Alu -118 194 5 1575 161 37 111 chr9 14686656 14687060 -103175567 - MLT1A2 LTR MaLR 0 374 1 21 0 0 0 chr9 14687210 14687231 -103175396 + AT_rich Low_complexity Low_complexity 1 21 0 264 226 0 0 chr9 14688048 14688101 -103174526 + MIR SINE MIR 107 159 -103 499 272 103 22 chr9 14688323 14688507 -103174120 + MIR3 SINE MIR 3 201 -7 249 291 183 23 chr9 14690800 14690975 -103171652 - L2 LINE L2 -34 3279 3077 260 307 44 73 chr9 14691314 14691451 -103171176 - MER5B DNA MER1_type -38 140 8 490 297 39 28 chr9 14692051 14692233 -103170394 - MIR3 SINE MIR -7 201 18 597 295 93 79 chr9 14692863 14693182 -103169445 + MLT1J LTR MaLR 1 331 -180 1767 157 39 0 chr9 14693182 14693468 -103169159 + AluJb SINE Alu 1 297 -15 597 295 93 79 chr9 14693468 14693619 -103169008 + MLT1J LTR MaLR 331 478 -33 441 289 16 8 chr9 14694730 14694851 -103167776 - MIR SINE MIR -135 127 6 446 157 0 11 chr9 14695530 14695619 -103167008 + GA-rich Low_complexity Low_complexity 4 91 0 234 0 0 0 chr9 14696249 14696275 -103166352 + (CA)n Simple_repeat Simple_repeat 2 27 0 1613 159 59 14 chr9 14696496 14696786 -103165841 - AluSx SINE Alu -9 303 1 225 0 0 0 chr9 14697014 14697039 -103165588 + (A)n Simple_repeat Simple_repeat 1 25 0 553 280 155 19 chr9 14697347 14697554 -103165073 - MIR SINE MIR 0 262 28 233 204 0 0 chr9 14700848 14700892 -103161735 + (CA)n Simple_repeat Simple_repeat 2 45 0 494 216 27 27 chr9 14703122 14703233 -103159394 - MIR SINE MIR -80 182 72 884 223 27 0 chr9 14703721 14703905 -103158722 - MER5A DNA MER1_type 0 189 1 238 263 62 12 chr9 14703939 14704019 -103158608 + L2 LINE L2 2702 2785 -529 618 206 46 8 chr9 14704598 14704729 -103157898 + MER45A DNA AcHobo 1 136 -42 376 344 38 5 chr9 14706136 14706322 -103156305 + MIR SINE MIR 70 261 -1 22 70 0 0 chr9 14706521 14706564 -103156063 + AT_rich Low_complexity Low_complexity 1 43 0 489 34 0 0 chr9 14706807 14706866 -103155761 + (TC)n Simple_repeat Simple_repeat 2 60 0 405 0 0 0 chr9 14706865 14706910 -103155717 + (TG)n Simple_repeat Simple_repeat 2 46 0 * 2416 92 3 0 chr9 14707697 14708000 -103154627 + AluSp SINE Alu 1 304 -9 207 0 0 0 chr9 14709700 14709723 -103152904 + (A)n Simple_repeat Simple_repeat 1 23 0 396 0 0 0 chr9 14711161 14711205 -103151422 + (CA)n Simple_repeat Simple_repeat 2 45 0 354 224 12 24 chr9 14711763 14711848 -103150779 - MIR SINE MIR -104 158 75 191 296 19 0 chr9 14712193 14712247 -103150380 + MIR3 SINE MIR 100 154 -54 325 161 0 16 chr9 14712581 14712643 -103149984 + MLT1E1 LTR MaLR 3 63 -591 1857 158 26 3 chr9 14712841 14713144 -103149483 + AluJb SINE Alu 3 312 0 371 226 161 91 chr9 14714093 14714166 -103148461 - L1ME1 LINE L1 -5 6161 6095 1702 171 34 0 chr9 14714166 14714458 -103148169 - AluSx SINE Alu -10 302 1 371 226 161 91 chr9 14714458 14714583 -103148044 - L1ME1 LINE L1 -71 6095 5949 1765 151 7 0 chr9 14715689 14715980 -103146647 - L1MB2 LINE L1 -1 6170 5878 357 244 161 6 chr9 14716159 14716327 -103146300 - L1M4 LINE L1 -2218 3928 3735 414 284 148 13 chr9 14716620 14716775 -103145852 - MER5A DNA MER1_type -4 185 10 702 232 11 17 chr9 14716787 14716964 -103145663 + MER5B DNA MER1_type 2 177 -1 314 278 60 22 chr9 14716978 14717148 -103145479 - L1M4 LINE L1 -2682 3464 3302 1848 157 36 12 chr9 14717148 14717485 -103145142 + MER7A DNA MER2_type 3 345 -1 314 278 60 22 chr9 14717485 14717684 -103144943 - L1M4 LINE L1 -2844 3302 3081 414 333 79 12 chr9 14717715 14717967 -103144660 - L1M4 LINE L1 -3195 2951 2683 228 246 91 70 chr9 14718218 14718405 -103144222 - L1M4 LINE L1 -3813 2333 2143 272 283 26 0 chr9 14718416 14718529 -103144098 + T-rich Low_complexity Low_complexity 2 117 0 317 325 169 0 chr9 14718599 14718759 -103143868 - MIR SINE MIR -71 191 5 24 85 0 0 chr9 14718879 14718938 -103143689 + AT_rich Low_complexity Low_complexity 1 59 0 234 289 64 72 chr9 14719332 14719567 -103143060 + L1ME4a LINE L1 3880 4112 -2034 1168 251 85 54 chr9 14719671 14720248 -103142379 + L1ME4a LINE L1 5392 5986 -135 237 108 0 0 chr9 14720850 14720887 -103141740 + (T)n Simple_repeat Simple_repeat 1 37 0 253 250 50 38 chr9 14720968 14721048 -103141579 + MIR SINE MIR 122 202 -60 375 231 0 13 chr9 14721169 14721247 -103141380 - L3 LINE CR1 -263 1314 1238 200 353 30 68 chr9 14723122 14723255 -103139372 - L2 LINE L2 -20 3252 3125 1860 107 0 0 chr9 14723566 14723850 -103138777 - AluSg SINE Alu 0 322 39 504 279 29 47 chr9 14724595 14724767 -103137860 - MIR SINE MIR -86 176 8 1920 166 45 20 chr9 14728549 14728946 -103133681 - L1MA4 LINE L1 -11 6289 5883 188 241 207 11 chr9 14730286 14730373 -103132254 + L2 LINE L2 3169 3272 0 483 243 43 21 chr9 14730498 14730638 -103131989 - MIR SINE MIR -6 256 114 758 41 41 0 chr9 14730788 14730885 -103131742 - L1MA3 LINE L1 -47 6258 6158 232 178 22 0 chr9 14731607 14731662 -103130965 + (TAGG)n Simple_repeat Simple_repeat 1 56 0 403 319 64 43 chr9 14733021 14733209 -103129418 + MIR3 SINE MIR 16 207 -1 22 35 0 0 chr9 14733276 14733305 -103129322 + AT_rich Low_complexity Low_complexity 1 29 0 1616 170 50 20 chr9 14733307 14733607 -103129020 + AluJb SINE Alu 3 311 -1 1778 177 0 7 chr9 14733777 14734082 -103128545 + AluJb SINE Alu 1 303 -9 21 36 0 0 chr9 14734210 14734238 -103128389 + AT_rich Low_complexity Low_complexity 1 28 0 526 326 38 21 chr9 14734252 14734488 -103128139 - MIR SINE MIR -2 260 21 1280 169 0 14 chr9 14735849 14736068 -103126559 + AluJb SINE Alu 85 300 -12 388 354 123 34 chr9 14736629 14737179 -103125448 + L2 LINE L2 2657 3267 -5 378 0 0 0 chr9 14737685 14737727 -103124900 + (CA)n Simple_repeat Simple_repeat 2 43 0 21 57 0 0 chr9 14738722 14738757 -103123870 + AT_rich Low_complexity Low_complexity 1 35 0 2034 125 75 20 chr9 14739245 14739590 -103123037 - THE1B LTR MaLR 0 364 1 216 0 0 0 chr9 14739792 14739816 -103122811 + (T)n Simple_repeat Simple_repeat 1 24 0 341 176 0 14 chr9 14739822 14739896 -103122731 - LTR30 LTR ERV1 -98 624 552 1613 171 0 4 chr9 14740793 14741067 -103121560 - AluJb SINE Alu -39 273 1 230 217 0 0 chr9 14741195 14741241 -103121386 + MER103 DNA DNA 76 121 -45 204 273 236 18 chr9 14742428 14742538 -103120089 - MIR3 SINE MIR -10 198 65 198 103 0 0 chr9 14742797 14742826 -103119801 + (CA)n Simple_repeat Simple_repeat 2 30 0 667 276 94 15 chr9 14742987 14743389 -103119238 - L1MC5 LINE L1 -76 7885 7452 434 288 167 9 chr9 14743476 14743691 -103118936 - MIR SINE MIR -13 249 1 24 32 0 0 chr9 14743975 14744006 -103118621 + AT_rich Low_complexity Low_complexity 1 31 0 292 313 122 9 chr9 14744084 14744199 -103118428 + MIR3 SINE MIR 74 201 -7 570 217 60 78 chr9 14746519 14746800 -103115827 - L1ME4a LINE L1 -15 6106 5831 1126 88 0 31 chr9 14746920 14747080 -103115547 - AluSx SINE Alu -157 155 1 291 303 45 19 chr9 14747086 14747241 -103115386 - L1ME4a LINE L1 -302 5819 5661 214 234 53 96 chr9 14747250 14747344 -103115283 + L2 LINE L2 3222 3311 -2 316 252 135 0 chr9 14747344 14747455 -103115172 - L1ME4a LINE L1 -472 5649 5524 258 312 0 16 chr9 14748772 14748827 -103113800 + A-rich Low_complexity Low_complexity 1 55 -68 1565 188 29 0 chr9 14748827 14749104 -103113523 + AluJo SINE Alu 3 287 -25 258 312 0 16 chr9 14749104 14749173 -103113454 + A-rich Low_complexity Low_complexity 55 123 0 258 374 61 9 chr9 14750671 14750786 -103111841 + L2 LINE L2 3137 3257 -15 23 0 0 0 chr9 14752141 14752164 -103110463 + AT_rich Low_complexity Low_complexity 1 23 0 228 86 0 0 chr9 14752267 14752302 -103110325 + (T)n Simple_repeat Simple_repeat 1 35 0 24 32 0 0 chr9 14752748 14752779 -103109848 + AT_rich Low_complexity Low_complexity 1 31 0 2280 97 10 0 chr9 14752975 14753274 -103109353 - AluSq SINE Alu -11 302 1 21 0 0 0 chr9 14753433 14753454 -103109173 + AT_rich Low_complexity Low_complexity 1 21 0 874 206 29 40 chr9 14754079 14754351 -103108276 + L1MC5 LINE L1 7659 7927 -34 313 372 58 0 chr9 14754722 14754843 -103107784 + L2 LINE L2 3145 3272 0 184 365 148 0 chr9 14755325 14755440 -103107187 + L2 LINE L2 3141 3272 0 2288 95 0 0 chr9 14756236 14756530 -103106097 + AluSg SINE Alu 3 296 -14 229 380 0 6 chr9 14757846 14758004 -103104623 + (CAGG)n Simple_repeat Simple_repeat 3 159 0 448 335 43 43 chr9 14758086 14758340 -103104287 - L2 LINE L2 -463 2851 2598 2052 115 22 26 chr9 14758410 14758723 -103103904 - AluSx SINE Alu 0 312 1 388 271 25 25 chr9 14759206 14759328 -103103299 - MER5A DNA MER1_type -4 185 64 23 0 0 0 chr9 14759910 14759933 -103102694 + AT_rich Low_complexity Low_complexity 1 23 0 185 0 40 0 chr9 14760361 14760386 -103102241 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 185 0 40 0 chr9 14760408 14760433 -103102194 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 1850 123 0 4 chr9 14760449 14760709 -103101918 - AluSq SINE Alu -54 259 1 210 71 0 0 chr9 14762905 14762933 -103099694 + (A)n Simple_repeat Simple_repeat 1 28 0 341 296 185 6 chr9 14773969 14774131 -103088496 + MIR3 SINE MIR 1 191 -17 21 36 0 0 chr9 14775682 14775710 -103086917 + AT_rich Low_complexity Low_complexity 1 28 0 992 174 45 67 chr9 14776887 14777111 -103085516 + AluJo SINE Alu 84 302 -10 1977 134 24 3 chr9 14777478 14777768 -103084859 + AluSx SINE Alu 3 298 -14 2321 40 0 20 chr9 14780966 14781263 -103081364 - AluY SINE Alu -20 291 1 1948 142 10 3 chr9 14781590 14781899 -103080728 - AluSx SINE Alu -1 311 1 303 93 0 0 chr9 14783796 14783839 -103078788 + (A)n Simple_repeat Simple_repeat 1 43 0 227 154 0 19 chr9 14784025 14784077 -103078550 + (TG)n Simple_repeat Simple_repeat 2 52 0 943 280 21 4 chr9 14787517 14787760 -103074867 + MIR SINE MIR 8 254 -8 23 33 0 0 chr9 14788129 14788159 -103074468 + AT_rich Low_complexity Low_complexity 1 30 0 313 358 119 11 chr9 14788977 14789153 -103073474 - L3 LINE CR1 -40 1537 1343 490 282 118 9 chr9 14789183 14789375 -103073252 + MIR SINE MIR 35 243 -19 241 310 14 14 chr9 14789561 14789632 -103072995 - L3 LINE CR1 -482 1095 1025 22 0 0 0 chr9 14790366 14790388 -103072239 + AT_rich Low_complexity Low_complexity 1 22 0 193 222 0 0 chr9 14791658 14791694 -103070933 - L2 LINE L2 -22 3291 3256 26 0 0 0 chr9 14793522 14793548 -103069079 + AT_rich Low_complexity Low_complexity 1 26 0 270 160 0 0 chr9 14794084 14794134 -103068493 + A-rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr9 14794205 14794226 -103068401 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 14794794 14794815 -103067812 + AT_rich Low_complexity Low_complexity 1 21 0 216 86 0 0 chr9 14794882 14794917 -103067710 + (A)n Simple_repeat Simple_repeat 1 35 0 22 35 0 0 chr9 14795413 14795442 -103067185 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr9 14797382 14797403 -103065224 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr9 14798189 14798210 -103064417 + (T)n Simple_repeat Simple_repeat 1 21 0 25 0 0 0 chr9 14798578 14798603 -103064024 + AT_rich Low_complexity Low_complexity 1 25 0 195 42 0 0 chr9 14798895 14798919 -103063708 + (T)n Simple_repeat Simple_repeat 1 24 0 21 0 0 0 chr9 14799456 14799477 -103063150 + AT_rich Low_complexity Low_complexity 1 21 0 1843 129 0 11 chr9 14800958 14801230 -103061397 + AluJb SINE Alu 44 312 0 382 340 75 16 chr9 14801312 14801500 -103061127 + MIR SINE MIR 33 231 -31 3095 160 2 4 chr9 14801897 14802402 -103060225 - MER44D DNA MER2_type -44 561 3 760 284 22 18 chr9 14804392 14804621 -103058006 + MIR SINE MIR 16 245 -17 414 0 0 0 chr9 14806179 14806225 -103056402 + (CA)n Simple_repeat Simple_repeat 1 46 0 21 0 0 0 chr9 14806777 14806798 -103055829 + AT_rich Low_complexity Low_complexity 1 21 0 439 287 0 0 chr9 14807188 14807289 -103055338 + MER5A DNA MER1_type 9 109 -80 211 205 0 0 chr9 14808182 14808221 -103054406 - L2 LINE L2 -3 3310 3272 775 299 111 0 chr9 14808223 14808457 -103054170 + MIR SINE MIR 3 262 0 321 332 126 41 chr9 14808432 14809098 -103053529 - L2 LINE L2 -7 3306 2499 * 654 300 25 17 chr9 14812711 14812951 -103049676 + MLT1J LTR MaLR 111 352 -159 499 110 0 0 chr9 14813080 14813153 -103049474 - Alu SINE Alu -11 299 227 1523 191 0 15 chr9 14814618 14814891 -103047736 + AluJb SINE Alu 44 312 0 633 267 75 11 chr9 14814973 14815160 -103047467 + MIR SINE MIR 33 231 -31 1990 139 19 13 chr9 14816792 14817101 -103045526 + AluJb SINE Alu 1 311 -1 598 271 33 17 chr9 14818758 14818939 -103043688 - MIR SINE MIR -12 250 67 22 0 0 0 chr9 14819014 14819036 -103043591 + AT_rich Low_complexity Low_complexity 1 22 0 423 278 102 49 chr9 14819280 14819485 -103043142 - MIR SINE MIR 0 262 47 2063 134 3 3 chr9 14820382 14820687 -103041940 - AluSc SINE Alu -4 305 1 414 240 53 73 chr9 14821312 14821431 -103041196 + MIR SINE MIR 92 209 -53 2415 96 3 0 chr9 14821431 14821743 -103040884 + AluSp SINE Alu 1 313 0 414 240 53 73 chr9 14821743 14821773 -103040854 + MIR SINE MIR 209 238 -24 208 263 348 0 chr9 14823256 14823374 -103039253 + MIR SINE MIR 2 160 -102 287 181 95 31 chr9 14823865 14823972 -103038655 + MER5B DNA MER1_type 1 178 0 280 333 135 0 chr9 14824697 14824838 -103037789 + L3 LINE CR1 1254 1413 -164 2048 145 0 0 chr9 14825013 14825303 -103037324 + AluSx SINE Alu 1 290 -22 33 25 0 0 chr9 14825316 14825356 -103037271 + AT_rich Low_complexity Low_complexity 1 40 0 287 302 155 0 chr9 14825557 14825673 -103036954 - L2 LINE L2 -181 3091 2958 908 247 28 0 chr9 14827516 14827694 -103034933 + MER5A DNA MER1_type 7 189 0 220 281 146 0 chr9 14827777 14827859 -103034768 - MIR SINE MIR -62 200 107 198 287 157 13 chr9 14828020 14828112 -103034515 + MIR SINE MIR 60 147 -61 203 227 15 15 chr9 14828648 14828714 -103033913 + (TA)n Simple_repeat Simple_repeat 1 66 0 347 192 87 19 chr9 14828714 14828818 -103033809 - L1MCa LINE L1 -4321 2105 1995 192 40 0 0 chr9 14828829 14828854 -103033773 + (TTAGGG)n Simple_repeat Simple_repeat 4 28 0 * 536 128 34 28 chr9 14828852 14829031 -103033596 + (TA)n Simple_repeat Simple_repeat 1 180 0 300 191 90 22 chr9 14829040 14829129 -103033498 - L1MC4 LINE L1 -1340 6702 6608 1490 203 32 11 chr9 14829137 14829418 -103033209 - AluJo SINE Alu -25 287 1 730 253 29 57 chr9 14829923 14830204 -103032423 - Charlie8 DNA MER1_type -2144 273 1 2047 131 10 0 chr9 14832042 14832332 -103030295 + AluSx SINE Alu 1 293 -19 1755 174 7 4 chr9 14832863 14833144 -103029483 + AluJo SINE Alu 1 282 -30 304 385 0 8 chr9 14834243 14834373 -103028254 - L2 LINE L2 -955 2359 2231 2140 96 0 0 chr9 14835278 14835548 -103027079 - AluSg SINE Alu -17 293 24 26 82 0 0 chr9 14835912 14835973 -103026654 + AT_rich Low_complexity Low_complexity 1 61 0 258 318 0 0 chr9 14836037 14836100 -103026527 + L2 LINE L2 3246 3308 -5 2464 70 0 3 chr9 14836989 14837289 -103025338 + AluSg SINE Alu 1 299 -11 2457 68 0 16 chr9 14837667 14837977 -103024650 - AluY SINE Alu -6 305 1 192 125 0 0 chr9 14838760 14838792 -103023835 + (A)n Simple_repeat Simple_repeat 1 32 0 27 49 0 0 chr9 14839058 14839099 -103023528 + AT_rich Low_complexity Low_complexity 1 41 0 393 329 45 13 chr9 14842832 14842987 -103019640 + L3 LINE CR1 281 440 -1137 193 338 53 53 chr9 14843209 14843342 -103019285 + L2 LINE L2 3137 3269 -3 2163 121 0 3 chr9 14845556 14845853 -103016774 - AluJb SINE Alu -14 298 3 1608 129 4 12 chr9 14846902 14847143 -103015484 + AluSx SINE Alu 15 253 -59 202 289 58 0 chr9 14847143 14847195 -103015432 + L2 LINE L2 3210 3264 -8 279 275 29 0 chr9 14848271 14848340 -103014287 + MIR3 SINE MIR 135 205 -3 24 77 0 0 chr9 14848572 14848624 -103014003 + AT_rich Low_complexity Low_complexity 1 52 0 600 40 0 0 chr9 14849120 14849156 -103013471 + (TG)n Simple_repeat Simple_repeat 1 111 0 600 40 0 0 chr9 14849156 14849231 -103013396 + (TG)n Simple_repeat Simple_repeat 2 76 0 188 35 35 0 chr9 14849386 14849415 -103013212 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 392 270 122 0 chr9 14851839 14851954 -103010673 + L2 LINE L2 3183 3311 -2 967 141 0 0 chr9 14853061 14853196 -103009431 + AluSq/x SINE Alu 1 135 -177 1845 188 0 0 chr9 14853196 14853505 -103009122 + AluJb SINE Alu 1 309 -3 493 284 99 33 chr9 14854612 14855002 -103007625 + LTR33A LTR ERVL 8 475 -48 338 309 29 14 chr9 14860753 14860892 -103001735 - MER5A DNA MER1_type -5 184 44 302 317 163 46 chr9 14862760 14863637 -102998990 + L2 LINE L2 1986 2965 -349 258 326 22 22 chr9 14864088 14864180 -102998447 - L2 LINE L2 -23 3290 3199 324 0 0 0 chr9 14864303 14864339 -102998288 + (CA)n Simple_repeat Simple_repeat 1 36 0 1475 190 3 28 chr9 14967981 14968270 -102894357 - AluJb SINE Alu -30 282 1 207 0 0 0 chr9 14968593 14968616 -102894011 + (A)n Simple_repeat Simple_repeat 1 23 0 215 357 10 23 chr9 14973298 14973502 -102889125 + CT-rich Low_complexity Low_complexity 1 201 0 2034 132 3 3 chr9 14974121 14974408 -102888219 + AluSx SINE Alu 1 287 -25 2425 44 0 20 chr9 14974946 14975242 -102887385 - AluY SINE Alu -21 290 1 198 0 0 0 chr9 14977006 14977028 -102885599 + (TGGGGG)n Simple_repeat Simple_repeat 5 26 0 27 0 0 0 chr9 14977418 14977445 -102885182 + AT_rich Low_complexity Low_complexity 1 27 0 23 33 0 0 chr9 14978800 14978830 -102883797 + AT_rich Low_complexity Low_complexity 1 30 0 450 325 101 5 chr9 14979216 14979404 -102883223 + MIR SINE MIR 53 258 -4 2166 102 14 0 chr9 14980168 14980462 -102882165 - AluSx SINE Alu -11 301 4 213 243 81 14 chr9 14980680 14980754 -102881873 - MIR SINE MIR -67 195 117 1343 158 150 28 chr9 14981168 14981447 -102881180 - AluSx SINE Alu 0 310 1 521 125 11 34 chr9 14981505 14981593 -102881034 + FRAM/FAM SINE Alu 1 78 -98 1238 177 156 0 chr9 14981615 14981858 -102880769 - AluJo SINE Alu -31 281 1 411 272 51 10 chr9 14982292 14982436 -102880191 + MIR SINE MIR 8 163 -45 222 37 0 0 chr9 14982987 14983014 -102879613 + (CAAAAA)n Simple_repeat Simple_repeat 3 29 0 21 57 0 0 chr9 14983123 14983158 -102879469 + AT_rich Low_complexity Low_complexity 1 35 0 2326 71 0 10 chr9 14983420 14983716 -102878911 - AluSp SINE Alu -20 293 1 606 253 116 5 chr9 14983921 14984119 -102878508 - MER58A DNA MER1_type -1 223 4 1782 159 17 10 chr9 14984389 14984685 -102877942 - AluSx SINE Alu -14 298 1 2013 102 49 0 chr9 14984761 14985045 -102877582 - AluSg SINE Alu -11 299 2 218 341 11 44 chr9 14985434 14985525 -102877102 - L2 LINE L2 0 3272 3185 212 356 63 51 chr9 14986116 14986447 -102876180 - L2 LINE L2 -825 2489 2155 892 118 0 22 chr9 14986461 14986596 -102876031 + FLAM_C SINE Alu 12 143 0 539 204 0 19 chr9 14986728 14986836 -102875791 + FRAM SINE Alu 67 172 -4 565 264 58 17 chr9 14988563 14988737 -102873890 - MER5A DNA MER1_type -8 181 1 2310 100 7 0 chr9 14988976 14989277 -102873350 - AluSx SINE Alu -8 304 2 426 261 128 20 chr9 14989586 14989781 -102872846 - MIR SINE MIR -27 235 20 1297 112 25 5 chr9 14990016 14990212 -102872415 + AluSq SINE Alu 2 201 -112 1425 92 5 0 chr9 14990313 14990497 -102872130 + AluSg/x SINE Alu 117 301 -11 2376 108 0 0 chr9 14990498 14990805 -102871822 + AluY SINE Alu 1 307 -4 236 261 35 78 chr9 14991019 14991134 -102871493 + MIR SINE MIR 117 226 -36 269 159 0 0 chr9 14991756 14991800 -102870827 - Alu SINE Alu -9 293 250 231 36 0 0 chr9 14991820 14991848 -102870779 + (TATG)n Simple_repeat Simple_repeat 2 29 0 1054 189 173 21 chr9 14991848 14992091 -102870536 - AluJo SINE Alu -18 284 5 216 0 0 0 chr9 14993118 14993142 -102869485 + (T)n Simple_repeat Simple_repeat 1 24 0 216 111 0 0 chr9 14993162 14993198 -102869429 + (TG)n Simple_repeat Simple_repeat 2 37 0 21 0 0 0 chr9 14993819 14993840 -102868787 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 14995083 14995104 -102867523 + AT_rich Low_complexity Low_complexity 1 21 0 541 302 56 22 chr9 14995144 14995323 -102867304 + MIR SINE MIR 47 231 -31 224 324 162 0 chr9 14996391 14996496 -102866131 - L2 LINE L2 -18 3295 3174 660 288 116 13 chr9 14996967 14997200 -102865427 + MIR SINE MIR 5 261 -1 24 32 0 0 chr9 15001714 15001745 -102860882 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr9 15001881 15001909 -102860718 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr9 15002066 15002086 -102860541 + (CAA)n Simple_repeat Simple_repeat 2 21 0 25 31 0 0 chr9 15002986 15003018 -102859609 + AT_rich Low_complexity Low_complexity 1 32 0 2092 81 61 10 chr9 15003738 15004034 -102858593 + AluSx SINE Alu 1 311 -1 211 329 13 0 chr9 15004181 15004260 -102858367 + CT-rich Low_complexity Low_complexity 3 82 0 264 30 0 0 chr9 15004694 15004727 -102857900 + (TG)n Simple_repeat Simple_repeat 2 34 0 2015 141 0 0 chr9 15004727 15005011 -102857616 - AluSx SINE Alu -28 284 1 214 226 0 19 chr9 15005971 15006024 -102856603 + (TA)n Simple_repeat Simple_repeat 1 52 0 1689 103 64 57 chr9 15006235 15006517 -102856110 - AluSx SINE Alu -28 284 1 258 281 57 0 chr9 15006517 15006618 -102856009 - MIR SINE MIR -23 185 74 1519 166 23 65 chr9 15006739 15007047 -102855580 + AluSx SINE Alu 1 295 -17 204 40 0 0 chr9 15008833 15008858 -102853769 + (TG)n Simple_repeat Simple_repeat 2 26 0 2427 58 3 0 chr9 15009792 15010086 -102852541 - AluY SINE Alu -16 295 1 809 219 7 0 chr9 15011815 15011966 -102850661 + FRAM SINE Alu 1 146 -30 22 0 0 0 chr9 15020065 15020087 -102842540 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 15020709 15020730 -102841897 + AT_rich Low_complexity Low_complexity 1 21 0 297 0 0 0 chr9 15022824 15022857 -102839770 + (CA)n Simple_repeat Simple_repeat 1 33 0 267 31 0 0 chr9 15023592 15023624 -102839003 + (CA)n Simple_repeat Simple_repeat 2 33 0 24 0 0 0 chr9 15024161 15024185 -102838442 + AT_rich Low_complexity Low_complexity 1 24 0 192 97 0 0 chr9 15024724 15024755 -102837872 + (CGGG)n Simple_repeat Simple_repeat 3 33 0 224 208 0 0 chr9 15025533 15025581 -102837046 + CT-rich Low_complexity Low_complexity 1 48 0 186 136 0 76 chr9 15027258 15027324 -102835303 + (TCTCCC)n Simple_repeat Simple_repeat 4 64 0 21 36 0 0 chr9 15028067 15028095 -102834532 + AT_rich Low_complexity Low_complexity 1 28 0 210 118 0 0 chr9 15029449 15029483 -102833144 + (A)n Simple_repeat Simple_repeat 1 34 0 1227 110 0 0 chr9 15031025 15031189 -102831438 + AluSq SINE Alu 133 296 -17 189 0 0 0 chr9 15032688 15032709 -102829918 + (A)n Simple_repeat Simple_repeat 1 21 0 1972 121 3 25 chr9 15032781 15033095 -102829532 - AluSx SINE Alu -5 307 1 593 202 0 0 chr9 15033243 15033352 -102829275 + AluSq/x SINE Alu 1 109 -203 212 255 0 0 chr9 15036217 15036268 -102826359 + L2 LINE L2 3261 3311 -2 858 152 8 0 chr9 15036820 15036952 -102825675 + FRAM SINE Alu 14 146 -30 23 54 0 0 chr9 15036952 15036989 -102825638 + AT_rich Low_complexity Low_complexity 1 37 0 628 78 0 0 chr9 15037038 15037128 -102825499 - LTR9B LTR ERV1 -84 560 471 251 336 55 14 chr9 15037138 15037284 -102825343 - MIR SINE MIR -14 248 97 1508 178 47 25 chr9 15038241 15038517 -102824110 + AluJb SINE Alu 7 288 -24 1107 154 28 93 chr9 15038532 15038619 -102824008 - THE1B LTR MaLR -131 233 142 1834 110 3 98 chr9 15038619 15038947 -102823680 + AluSq SINE Alu 1 297 -16 1107 154 28 93 chr9 15038947 15039106 -102823521 - THE1B LTR MaLR -222 142 3 22 0 0 0 chr9 15039106 15039128 -102823499 + AT_rich Low_complexity Low_complexity 1 22 0 490 163 0 0 chr9 15039435 15039515 -102823112 + AluS SINE Alu 3 82 -231 1165 161 0 6 chr9 15039515 15039695 -102822932 + AluJb SINE Alu 129 307 -5 385 278 157 36 chr9 15039964 15040187 -102822440 + MIR SINE MIR 4 253 -9 325 156 0 131 chr9 15040599 15040650 -102821977 - L1MB4 LINE L1 0 6180 6153 1960 125 6 26 chr9 15040650 15040962 -102821665 - AluSx SINE Alu -6 306 1 325 156 0 131 chr9 15040962 15041032 -102821595 - L1MB4 LINE L1 -27 6153 6075 24 85 0 0 chr9 15042074 15042133 -102820494 + AT_rich Low_complexity Low_complexity 1 59 0 450 200 17 35 chr9 15044133 15044248 -102818379 - MER96 DNA MER1_type? -1 174 62 2208 97 3 0 chr9 15045684 15045973 -102816654 - AluSx SINE Alu -22 290 1 40 21 0 0 chr9 15047631 15047678 -102814949 + AT_rich Low_complexity Low_complexity 1 47 0 210 71 0 0 chr9 15052444 15052472 -102810155 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 1645 208 69 5 chr9 15052781 15053185 -102809442 - L1MB8 LINE L1 -1 6177 5748 910 201 6 11 chr9 15054665 15054839 -102807788 - AluJb SINE Alu -29 283 111 395 91 0 15 chr9 15055343 15055409 -102807218 + (TG)n Simple_repeat Simple_repeat 1 65 0 2143 130 0 3 chr9 15056968 15057381 -102805246 - AluSq SINE Alu 0 412 1 181 222 0 0 chr9 15058914 15058950 -102803677 - MIR3 SINE MIR -39 169 134 1925 103 11 11 chr9 15059037 15059309 -102803318 + AluSg SINE Alu 1 272 -38 2115 144 7 0 chr9 15059595 15059901 -102802726 - AluSx SINE Alu -4 308 1 289 382 52 15 chr9 15059931 15060067 -102802560 - L3 LINE CR1 -430 1147 1007 249 262 19 78 chr9 15060998 15061101 -102801526 - MIR SINE MIR -119 143 47 320 285 99 41 chr9 15061191 15061349 -102801278 + MIR SINE MIR 33 208 -54 1290 186 86 34 chr9 15061349 15061676 -102800951 + MER2 DNA MER2_type 1 344 0 320 285 99 41 chr9 15061676 15061702 -102800925 + MIR SINE MIR 208 231 -31 2255 94 3 0 chr9 15061884 15062182 -102800445 - AluSp SINE Alu -14 299 1 1053 251 73 51 chr9 15062360 15062729 -102799898 - L2 LINE L2 -13 3300 2920 2272 92 7 0 chr9 15062729 15063022 -102799605 - AluSc SINE Alu -11 298 4 1053 251 73 51 chr9 15063022 15063063 -102799564 - L2 LINE L2 -393 2920 2881 280 277 0 0 chr9 15063251 15063316 -102799311 - L2 LINE L2 0 3313 3249 1653 159 9 45 chr9 15065521 15065854 -102796773 + L1MA10 LINE L1 6003 6323 -11 829 196 106 5 chr9 15066161 15066360 -102796267 - MER20 DNA MER1_type 0 219 1 21 0 0 0 chr9 15070446 15070467 -102792160 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr9 15071788 15071819 -102790808 + AT_rich Low_complexity Low_complexity 1 31 0 619 127 17 8 chr9 15074842 15074960 -102787667 + GA-rich Low_complexity Low_complexity 3 121 0 863 222 65 48 chr9 15075844 15076092 -102786535 - MIR SINE MIR -10 252 1 1639 126 18 57 chr9 15079789 15080122 -102782505 + MER33 DNA MER1_type 5 324 0 195 279 125 10 chr9 15080122 15080226 -102782401 + MIR3 SINE MIR 39 154 -54 198 0 0 0 chr9 15084904 15084926 -102777701 + (CA)n Simple_repeat Simple_repeat 2 23 0 1842 257 69 65 chr9 15087828 15088319 -102774308 - Tigger1 DNA MER2_type 0 2418 1926 463 125 25 25 chr9 15088308 15088388 -102774239 - Tigger1 DNA MER2_type -2337 81 2 * 21 0 0 0 chr9 15088454 15088475 -102774152 + AT_rich Low_complexity Low_complexity 1 21 0 230 264 66 11 chr9 15088646 15088737 -102773890 + L1ME LINE L1 5839 5934 -187 2293 92 3 0 chr9 15089003 15089296 -102773331 - AluSp SINE Alu -19 294 1 199 354 40 34 chr9 15090166 15090341 -102772286 - L2 LINE L2 -357 2957 2782 222 204 0 41 chr9 15090473 15090522 -102772105 - L2 LINE L2 -5 3267 3221 21 0 0 0 chr9 15092156 15092177 -102770450 + AT_rich Low_complexity Low_complexity 1 21 0 2395 91 0 0 chr9 15092760 15093058 -102769569 - AluY SINE Alu -13 298 1 21 0 0 0 chr9 15093692 15093713 -102768914 + AT_rich Low_complexity Low_complexity 1 21 0 2095 145 0 0 chr9 15094563 15094860 -102767767 - AluJo SINE Alu -15 297 1 29 28 0 0 chr9 15095178 15095214 -102767413 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr9 15095861 15095882 -102766745 + AT_rich Low_complexity Low_complexity 1 21 0 281 160 0 0 chr9 15096131 15096181 -102766446 - L1ME2 LINE L1 -9 6155 6106 29 0 0 0 chr9 15096665 15096694 -102765933 + AT_rich Low_complexity Low_complexity 1 29 0 690 101 0 20 chr9 15097557 15097656 -102764971 + FRAM SINE Alu 62 158 -18 494 286 132 18 chr9 15100549 15100769 -102761858 + MIR SINE MIR 4 248 -14 1307 96 0 0 chr9 15100878 15101044 -102761583 + AluSg/x SINE Alu 134 299 -13 358 254 18 36 chr9 15101179 15101289 -102761338 - MER5B DNA MER1_type -3 175 68 21 0 0 0 chr9 15103045 15103066 -102759561 + AT_rich Low_complexity Low_complexity 1 21 0 392 303 92 37 chr9 15103301 15103519 -102759108 + MIR SINE MIR 33 262 0 1471 206 58 14 chr9 15104124 15104483 -102758144 + L1ME2 LINE L1 5790 6164 0 1673 199 0 10 chr9 15106516 15106817 -102755810 - AluJb SINE Alu -14 298 1 435 259 187 6 chr9 15108034 15108200 -102754427 - MIR SINE MIR -26 236 41 2067 121 50 70 chr9 15108315 15108508 -102754119 + MLT1B LTR MaLR 1 183 -207 1724 99 0 0 chr9 15108508 15108730 -102753897 + AluSg SINE Alu 2 223 -87 2067 121 50 70 chr9 15108730 15108934 -102753693 + MLT1B LTR MaLR 183 390 0 381 22 0 0 chr9 15110118 15110164 -102752463 + (CA)n Simple_repeat Simple_repeat 2 47 0 194 0 39 0 chr9 15113561 15113587 -102749040 + (TC)n Simple_repeat Simple_repeat 1 27 0 21 57 0 0 chr9 15113888 15113923 -102748704 + AT_rich Low_complexity Low_complexity 1 35 0 515 292 64 28 chr9 15113931 15114152 -102748475 - MIR SINE MIR 0 262 36 1134 155 0 22 chr9 15114166 15114347 -102748280 - AluJb SINE Alu -2 310 134 272 248 18 71 chr9 15114880 15114993 -102747634 + L2 LINE L2 3124 3230 -83 192 293 98 38 chr9 15115054 15115187 -102747440 + MIR SINE MIR 110 250 -12 186 313 0 48 chr9 15115326 15115409 -102747218 - MIR SINE MIR -49 213 135 22 0 0 0 chr9 15115535 15115557 -102747070 + AT_rich Low_complexity Low_complexity 1 22 0 1437 120 60 0 chr9 15216160 15216377 -102646250 + MER30 DNA MER1_type 1 230 0 920 211 68 77 chr9 15217654 15217990 -102644637 - MER2 DNA MER2_type -12 333 1 945 206 30 0 chr9 15218111 15218360 -102644267 - L1MA8 LINE L1 -130 6161 5903 1274 14 0 0 chr9 15218536 15218680 -102643947 + AluYa5/8 SINE Alu 167 310 0 1766 181 3 3 chr9 15219459 15219758 -102642869 + AluJb SINE Alu 1 299 -13 2084 132 7 10 chr9 15220051 15220361 -102642266 + AluSq SINE Alu 1 309 -4 231 295 162 9 chr9 15220502 15220607 -102642020 + L2 LINE L2 3151 3271 -1 23 0 0 0 chr9 15220797 15220820 -102641807 + AT_rich Low_complexity Low_complexity 1 23 0 465 274 41 34 chr9 15220890 15221078 -102641549 - MIR SINE MIR -56 152 7 24 53 0 0 chr9 15221112 15221150 -102641477 + AT_rich Low_complexity Low_complexity 1 38 0 1933 113 8 4 chr9 15221388 15221653 -102640974 - AluSx SINE Alu -10 302 37 196 182 0 0 chr9 15222597 15222630 -102639997 - L2 LINE L2 0 3272 3240 1830 88 4 16 chr9 15223047 15223298 -102639329 - AluSp SINE Alu -65 248 1 357 256 47 47 chr9 15223658 15223787 -102638840 + L2 LINE L2 3168 3296 -17 288 0 0 0 chr9 15224329 15224361 -102638266 + (TA)n Simple_repeat Simple_repeat 2 33 0 270 164 0 0 chr9 15224485 15224540 -102638087 + GA-rich Low_complexity Low_complexity 1 55 0 2404 91 0 7 chr9 15226612 15226921 -102635706 - AluSx SINE Alu -3 309 3 2118 111 28 0 chr9 15227567 15227855 -102634772 - AluSg SINE Alu -14 296 1 25 65 0 0 chr9 15227901 15227947 -102634680 + AT_rich Low_complexity Low_complexity 1 46 0 271 330 80 0 chr9 15228523 15228623 -102634004 + MIR3 SINE MIR 56 163 -45 22 0 0 0 chr9 15230041 15230063 -102632564 + AT_rich Low_complexity Low_complexity 1 22 0 251 241 35 69 chr9 15230732 15230848 -102631779 - MIR SINE MIR -60 202 91 584 142 0 8 chr9 15230957 15231084 -102631543 + (TG)n Simple_repeat Simple_repeat 2 127 0 518 305 142 36 chr9 15231093 15231509 -102631118 - L2 LINE L2 -50 3263 2804 294 148 0 0 chr9 15233423 15233477 -102629150 + (TC)n Simple_repeat Simple_repeat 1 54 0 340 337 109 5 chr9 15237816 15238000 -102624627 + MIR SINE MIR 60 262 0 209 318 159 5 chr9 15238279 15238480 -102624147 + L2 LINE L2 2266 2497 -817 213 140 18 70 chr9 15238630 15238687 -102623940 + A-rich Low_complexity Low_complexity 1 54 0 2090 128 0 0 chr9 15238784 15239072 -102623555 + AluSx SINE Alu 1 288 -24 1182 204 22 117 chr9 15239981 15240393 -102622234 + MLT1A2 LTR MaLR 1 373 -1 329 339 116 21 chr9 15240783 15240972 -102621655 + MIR SINE MIR 53 259 -3 1838 135 4 4 chr9 15241114 15241381 -102621246 - AluJo SINE Alu 0 312 46 240 143 0 0 chr9 15241385 15241427 -102621200 + (TTCC)n Simple_repeat Simple_repeat 4 45 0 261 98 0 0 chr9 15241475 15241516 -102621111 + (TCCCC)n Simple_repeat Simple_repeat 3 43 0 1387 178 4 4 chr9 15241539 15241764 -102620863 - AluJo SINE Alu -87 225 1 806 301 120 31 chr9 15241771 15242256 -102620371 + MLT1K LTR MaLR 42 569 -19 346 343 108 5 chr9 15242330 15242534 -102620093 - MIR SINE MIR -1 261 37 203 218 18 0 chr9 15242852 15242907 -102619720 + GA-rich Low_complexity Low_complexity 4 59 0 327 146 0 0 chr9 15246130 15246185 -102616442 + (GGGA)n Simple_repeat Simple_repeat 1 55 0 683 197 0 8 chr9 15246742 15246864 -102615763 + FLAM_A SINE Alu 1 121 -12 24 53 0 0 chr9 15246864 15246902 -102615725 + AT_rich Low_complexity Low_complexity 1 38 0 213 335 195 0 chr9 15247015 15247200 -102615427 + L2 LINE L2 2804 3024 -248 1790 168 4 0 chr9 15247213 15247487 -102615140 + AluSx SINE Alu 1 275 -37 284 0 28 0 chr9 15247491 15247527 -102615100 + (CAAAA)n Simple_repeat Simple_repeat 1 37 0 1501 187 4 8 chr9 15248178 15248446 -102614181 + AluJo SINE Alu 46 312 0 410 277 145 24 chr9 15249119 15249285 -102613342 + MIR SINE MIR 7 192 -70 22 0 0 0 chr9 15249514 15249536 -102613091 + AT_rich Low_complexity Low_complexity 1 22 0 203 289 0 22 chr9 15249647 15249737 -102612890 + GA-rich Low_complexity Low_complexity 2 89 0 662 274 99 9 chr9 15250245 15250468 -102612159 + MIR SINE MIR 2 244 -18 2140 126 3 3 chr9 15250667 15250977 -102611650 + AluSx SINE Alu 1 310 -2 2124 101 0 14 chr9 15252812 15253129 -102609498 + AluSx SINE Alu 1 313 0 2168 117 0 0 chr9 15254228 15254519 -102608108 + AluSx SINE Alu 1 291 -21 2311 191 92 20 chr9 15254657 15255258 -102607369 - LTR48B LTR ERV1 0 644 1 241 26 53 0 chr9 15255959 15255997 -102606630 + (TTTG)n Simple_repeat Simple_repeat 3 42 0 202 397 98 16 chr9 15257957 15258151 -102604476 - L3b LINE CR1 -5 1578 1369 1628 174 18 60 chr9 15258444 15258829 -102603798 + MLT1A2 LTR MaLR 1 369 -5 325 324 133 82 chr9 15258905 15259220 -102603407 - L2 LINE L2 -2 3270 2940 225 349 95 27 chr9 15259380 15259502 -102603125 + L2 LINE L2 2227 2339 -975 1548 204 13 25 chr9 15259502 15259816 -102602811 + AluJb SINE Alu 1 310 -2 225 349 95 27 chr9 15259816 15259988 -102602639 + L2 LINE L2 2339 2541 -773 27 0 0 0 chr9 15260442 15260469 -102602158 + AT_rich Low_complexity Low_complexity 1 27 0 564 266 23 75 chr9 15260708 15261013 -102601614 + L2 LINE L2 3025 3313 0 1985 101 52 11 chr9 15261044 15261330 -102601297 + AluSx SINE Alu 1 298 -14 252 0 0 0 chr9 15263773 15263801 -102598826 + (A)n Simple_repeat Simple_repeat 1 28 0 288 263 0 13 chr9 15264357 15264433 -102598194 + C-rich Low_complexity Low_complexity 3 77 0 243 0 0 0 chr9 15265886 15265913 -102596714 + (A)n Simple_repeat Simple_repeat 1 27 0 194 295 27 89 chr9 15266960 15267072 -102595555 - L2 LINE L2 -2855 459 355 360 0 0 0 chr9 15267445 15267485 -102595142 + (CA)n Simple_repeat Simple_repeat 2 41 0 377 313 43 18 chr9 15269740 15269903 -102592724 + MIR SINE MIR 40 206 -56 315 104 0 0 chr9 15270517 15270565 -102592062 + (CA)n Simple_repeat Simple_repeat 1 48 0 614 265 60 0 chr9 15273395 15273546 -102589081 + MIR SINE MIR 40 199 -63 289 293 87 33 chr9 15275836 15275986 -102586641 - MIR SINE MIR -70 192 35 566 273 70 31 chr9 15275990 15276217 -102586410 + MIR SINE MIR 24 259 -3 313 309 75 11 chr9 15277225 15277403 -102585224 + MIR SINE MIR 8 193 -69 2244 106 3 0 chr9 15278324 15278617 -102584010 - AluSx SINE Alu -18 294 1 509 245 221 14 chr9 15278746 15278954 -102583673 + MIR SINE MIR 7 257 -5 335 330 13 3 chr9 15279056 15279184 -102583443 - MIR SINE MIR -62 146 34 437 280 127 0 chr9 15279865 15279983 -102582644 + L2 LINE L2 3138 3270 -2 2456 35 14 0 chr9 15280345 15280634 -102581993 + AluY SINE Alu 1 293 -18 2035 82 14 11 chr9 15280634 15280915 -102581712 - AluSg SINE Alu -28 282 1 315 71 0 0 chr9 15282277 15282319 -102580308 + (TG)n Simple_repeat Simple_repeat 2 43 0 198 103 0 0 chr9 15282319 15282348 -102580279 + (CATATA)n Simple_repeat Simple_repeat 2 30 0 22 80 0 0 chr9 15282359 15282409 -102580218 + AT_rich Low_complexity Low_complexity 1 50 0 310 227 0 0 chr9 15282417 15282483 -102580144 - L1MC4 LINE L1 -1337 6705 6640 341 222 19 0 chr9 15282733 15282841 -102579786 + (CATATA)n Simple_repeat Simple_repeat 1 110 0 382 362 81 0 chr9 15283592 15283802 -102578825 - MIR SINE MIR -16 246 20 1998 120 14 4 chr9 15284397 15284673 -102577954 + AluSx SINE Alu 1 279 -33 21 57 0 0 chr9 15284751 15284786 -102577841 + AT_rich Low_complexity Low_complexity 1 35 0 237 288 163 0 chr9 15285416 15285496 -102577131 + MIR3 SINE MIR 102 194 -14 295 324 38 19 chr9 15285740 15285845 -102576782 - MIR3 SINE MIR -11 197 91 2136 69 0 21 chr9 15288539 15288860 -102573767 + AluY SINE Alu 1 315 0 615 237 26 0 chr9 15289449 15289601 -102573026 - MIR SINE MIR -57 205 50 1584 195 29 11 chr9 15289640 15289989 -102572638 + MLT1A1 LTR MaLR 11 365 0 22 0 0 0 chr9 15291082 15291104 -102571523 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chr9 15291174 15291219 -102571408 + AT_rich Low_complexity Low_complexity 1 45 0 210 171 0 0 chr9 15294760 15294801 -102567826 + CT-rich Low_complexity Low_complexity 4 44 0 218 152 0 43 chr9 15295918 15295964 -102566663 + C-rich Low_complexity Low_complexity 2 45 0 24 32 0 0 chr9 15299224 15299255 -102563372 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr9 15299530 15299551 -102563076 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 15303144 15303166 -102559461 + AT_rich Low_complexity Low_complexity 1 22 0 263 226 0 0 chr9 15307138 15307200 -102555427 + (CGGG)n Simple_repeat Simple_repeat 3 64 0 246 128 0 0 chr9 15308777 15308816 -102553811 + (TCCC)n Simple_repeat Simple_repeat 2 40 0 225 0 0 0 chr9 15310298 15310323 -102552304 + (T)n Simple_repeat Simple_repeat 1 25 0 234 0 0 0 chr9 15313869 15313895 -102548732 + (A)n Simple_repeat Simple_repeat 1 26 0 258 176 0 0 chr9 15314089 15314140 -102548487 + (TG)n Simple_repeat Simple_repeat 1 51 0 21 0 0 0 chr9 15314463 15314484 -102548143 + GC_rich Low_complexity Low_complexity 1 21 0 35 54 0 0 chr9 15316947 15317003 -102545624 + AT_rich Low_complexity Low_complexity 1 56 0 23 33 0 0 chr9 15317617 15317647 -102544980 + AT_rich Low_complexity Low_complexity 1 30 0 192 40 0 0 chr9 15319607 15319632 -102542995 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1708 154 7 21 chr9 15319946 15320232 -102542395 - AluJb SINE Alu -18 294 13 22 0 0 0 chr9 15320255 15320277 -102542350 + AT_rich Low_complexity Low_complexity 1 22 0 483 254 101 26 chr9 15320674 15320863 -102541764 + Charlie8 DNA MER1_type 74 276 -2141 344 283 58 22 chr9 15320937 15321075 -102541552 - MIR3 SINE MIR -48 160 18 2361 109 0 0 chr9 15321302 15321606 -102541021 - AluSg SINE Alu -4 306 3 2322 89 0 13 chr9 15321763 15322078 -102540549 + AluY SINE Alu 1 311 0 775 253 25 5 chr9 15323313 15323515 -102539112 - MARNA DNA Mariner -146 440 235 380 327 70 19 chr9 15323583 15323797 -102538830 + MIR SINE MIR 28 252 -10 2354 87 7 0 chr9 15323972 15324272 -102538355 + AluSx SINE Alu 1 302 -10 211 292 15 0 chr9 15324437 15324502 -102538125 - L2 LINE L2 -13 3300 3235 624 296 11 5 chr9 15325114 15325300 -102537327 - MIR SINE MIR -61 201 15 2346 270 67 18 chr9 15325658 15326577 -102536050 - L1ME3A LINE L1 -20 6150 5181 666 237 0 24 chr9 15326583 15326601 -102536026 - L1MA10 LINE L1 0 6334 6317 3939 201 36 26 chr9 15326601 15328079 -102534548 - L1ME1 LINE L1 -5 6161 4670 524 210 20 0 chr9 15328559 15328659 -102533968 + MER45 DNA AcHobo 1 102 -1479 243 0 0 0 chr9 15328662 15328689 -102533938 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1430 204 14 17 chr9 15328774 15329068 -102533559 - MER58B DNA MER1_type -43 298 6 430 286 4 0 chr9 15329071 15329298 -102533329 + L1ME3A LINE L1 5647 5944 -226 2644 58 0 0 chr9 15330034 15330345 -102532282 + AluY SINE Alu 1 311 0 225 353 60 24 chr9 15330365 15330532 -102532095 + MIR SINE MIR 20 192 -70 291 259 23 6 chr9 15330630 15330811 -102531816 + CT-rich Low_complexity Low_complexity 1 184 0 291 206 16 0 chr9 15331125 15331188 -102531439 + MIR SINE MIR 199 262 0 254 348 14 7 chr9 15331473 15331611 -102531016 - L3 LINE CR1 -847 730 592 495 265 20 14 chr9 15331912 15332059 -102530568 - MIR3 SINE MIR -40 168 21 715 229 6 34 chr9 15332274 15332449 -102530178 - MER5B DNA MER1_type -5 173 4 206 170 170 0 chr9 15333188 15333241 -102529386 + MER91A DNA MER1_type 18 79 -117 469 132 8 41 chr9 15334345 15334466 -102528161 + (GGAA)n Simple_repeat Simple_repeat 2 118 0 201 283 0 0 chr9 15334682 15334728 -102527899 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 381 43 0 0 chr9 15336007 15336054 -102526573 + (GA)n Simple_repeat Simple_repeat 2 48 0 208 269 0 0 chr9 15336106 15336184 -102526443 + (CAGA)n Simple_repeat Simple_repeat 2 79 0 30 0 0 0 chr9 15338025 15338055 -102524572 + GC_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr9 15339064 15339092 -102523535 + AT_rich Low_complexity Low_complexity 1 28 0 229 120 0 80 chr9 15339283 15339333 -102523294 + (AGGGGG)n Simple_repeat Simple_repeat 3 48 0 197 78 0 47 chr9 15343728 15343764 -102518863 - MIR SINE MIR -63 145 112 22 0 0 0 chr9 15344042 15344064 -102518563 + AT_rich Low_complexity Low_complexity 1 22 0 180 77 0 0 chr9 15345762 15345788 -102516839 + (T)n Simple_repeat Simple_repeat 1 26 0 220 340 9 19 chr9 15345891 15345997 -102516630 + MIR3 SINE MIR 87 191 -17 351 0 0 0 chr9 15346696 15346735 -102515892 + (TG)n Simple_repeat Simple_repeat 2 40 0 1971 147 110 8 chr9 15347037 15347391 -102515236 + MLT1B LTR MaLR 1 390 0 608 222 28 44 chr9 15347500 15347592 -102515035 + MER45A DNA AcHobo 1 90 -1491 2442 80 0 3 chr9 15347592 15347904 -102514723 + AluY SINE Alu 1 311 0 608 222 28 44 chr9 15347904 15347991 -102514636 + MER45A DNA AcHobo 90 177 -1 2370 212 8 12 chr9 15349566 15350071 -102512556 + L1MB8 LINE L1 5652 6154 -24 218 214 41 10 chr9 15350095 15350193 -102512434 + (TA)n Simple_repeat Simple_repeat 1 101 0 482 287 84 24 chr9 15350498 15350664 -102511963 + MLT1K LTR MaLR 12 187 -401 1795 232 27 10 chr9 15350664 15351074 -102511553 - MER63B DNA MER1_type 0 436 20 1428 259 75 25 chr9 15351081 15351560 -102511067 + MLT1D LTR MaLR 1 503 -2 324 206 175 21 chr9 15351589 15351686 -102510941 + MLT1K LTR MaLR 199 310 -278 22 80 0 0 chr9 15351847 15351897 -102510730 + AT_rich Low_complexity Low_complexity 1 50 0 2471 56 0 37 chr9 15352447 15352769 -102509858 - AluY SINE Alu -1 310 1 29 0 0 0 chr9 15352900 15352929 -102509698 + AT_rich Low_complexity Low_complexity 1 29 0 1523 201 7 7 chr9 15354527 15354835 -102507792 + AluJo SINE Alu 1 308 -4 568 236 69 0 chr9 15354871 15355015 -102507612 + MER69A DNA AcHobo 19 172 -5 216 171 49 0 chr9 15355494 15355535 -102507092 + (TATATG)n Simple_repeat Simple_repeat 3 45 0 237 184 0 0 chr9 15355535 15355584 -102507043 + LTR66 LTR ERVL 395 443 -167 960 266 91 36 chr9 15355605 15356132 -102506495 - L1ME4a LINE L1 -74 6047 5492 476 234 35 35 chr9 15356929 15357070 -102505557 + MIR SINE MIR 119 259 -3 2236 112 3 3 chr9 15358392 15358695 -102503932 - AluSg SINE Alu -5 305 3 494 334 40 35 chr9 15359012 15359383 -102503244 - L2 LINE L2 0 3272 2900 3514 30 0 0 chr9 15359522 15359927 -102502700 + L1PA7 LINE L1 5722 6126 -28 431 120 40 80 chr9 15359980 15360080 -102502547 + L1PA8 LINE L1 6077 6172 0 358 206 199 15 chr9 15360774 15360905 -102501722 + MIR SINE MIR 85 239 -23 227 303 145 0 chr9 15360986 15361062 -102501565 + L2 LINE L2 3195 3281 -32 225 160 0 60 chr9 15361065 15361115 -102501512 - MIR SINE MIR -148 114 68 358 345 71 58 chr9 15361429 15361881 -102500746 + L2 LINE L2 2325 2782 -532 244 370 94 0 chr9 15361928 15362120 -102500507 + L2 LINE L2 2841 3050 -222 2255 111 0 0 chr9 15362726 15363015 -102499612 + AluSx SINE Alu 1 289 -23 243 0 0 0 chr9 15363028 15363055 -102499572 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 290 229 18 110 chr9 15363340 15363449 -102499178 + MIR SINE MIR 25 106 -102 525 217 172 59 chr9 15363456 15363677 -102498950 + Charlie8 DNA MER1_type 2 247 -2170 235 231 123 15 chr9 15364117 15364182 -102498445 + Charlie8 DNA MER1_type 2337 2408 -9 246 136 0 0 chr9 15365538 15365582 -102497045 + (TG)n Simple_repeat Simple_repeat 1 44 0 218 254 0 0 chr9 15366093 15366148 -102496479 + CT-rich Low_complexity Low_complexity 1 55 0 1989 141 0 0 chr9 15366531 15366841 -102495786 + AluSx SINE Alu 1 310 0 636 271 104 88 chr9 15366968 15367279 -102495348 - MLT1J LTR MaLR -4 507 184 2207 103 7 10 chr9 15367279 15367581 -102495046 + AluSq SINE Alu 1 301 -12 636 271 104 88 chr9 15367581 15367768 -102494859 - MLT1J LTR MaLR -327 184 1 962 168 19 0 chr9 15367970 15368125 -102494502 - FAM SINE Alu -16 159 2 2137 130 0 3 chr9 15368422 15368721 -102493906 - AluSx SINE Alu -14 298 1 1385 206 25 11 chr9 15369143 15369420 -102493207 - AluJo SINE Alu -31 281 1 235 338 102 0 chr9 15370010 15370167 -102492460 + MIR SINE MIR 74 246 -16 2400 101 0 0 chr9 15370250 15370558 -102492069 - AluSc SINE Alu -1 308 1 207 0 0 0 chr9 15371577 15371600 -102491027 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2357 85 0 0 chr9 15371603 15371886 -102490741 - AluSq SINE Alu -30 283 1 289 319 163 0 chr9 15372625 15372766 -102489861 - MIR SINE MIR -52 210 47 862 39 0 0 chr9 15372900 15373003 -102489624 + AluSg/x SINE Alu 206 308 -4 2033 153 3 0 chr9 15373090 15373391 -102489236 - AluJb SINE Alu -4 308 7 298 172 376 11 chr9 15373684 15373777 -102488850 + L2 LINE L2 3187 3313 0 221 184 0 0 chr9 15373980 15374018 -102488609 + L2 LINE L2 3179 3216 -97 264 59 0 0 chr9 15374252 15374286 -102488341 + (GA)n Simple_repeat Simple_repeat 1 34 0 505 252 147 43 chr9 15374458 15374716 -102487911 + L1ME3A LINE L1 5554 5838 -332 657 273 20 10 chr9 15377009 15377207 -102485420 - MIR SINE MIR -21 241 42 368 226 25 57 chr9 15377456 15377615 -102485012 - L1ME4a LINE L1 -42 6079 5926 2034 155 0 0 chr9 15377691 15377987 -102484640 - AluSx SINE Alu -14 298 3 325 271 41 33 chr9 15378779 15378901 -102483726 + MER103 DNA DNA 2 124 -42 490 241 92 24 chr9 15379286 15379587 -102483040 + L1ME LINE L1 5152 5473 -755 246 298 29 29 chr9 15379604 15379708 -102482919 + L1ME LINE L1 5540 5643 -519 237 286 13 97 chr9 15379905 15380059 -102482568 + L1ME LINE L1 5647 5787 -383 679 189 0 24 chr9 15380117 15380244 -102482383 + AluJb SINE Alu 121 244 -68 581 239 6 0 chr9 15380260 15380419 -102482208 + GA-rich Low_complexity Low_complexity 2 161 0 584 303 17 11 chr9 15380784 15380959 -102481668 + MER5B DNA MER1_type 1 176 -2 389 221 78 61 chr9 15382101 15382216 -102480411 + MIR SINE MIR 45 160 -62 883 233 24 75 chr9 15382237 15382444 -102480183 + L1MC3 LINE L1 6772 6957 -828 2407 168 3 3 chr9 15382444 15382808 -102479819 + MLT1A1 LTR MaLR 1 364 -1 883 233 24 75 chr9 15382808 15382931 -102479696 + L1MC3 LINE L1 6957 7085 -700 345 306 0 10 chr9 15382939 15383037 -102479590 + MLT1F1 LTR MaLR 35 131 -436 705 157 60 15 chr9 15383045 15383179 -102479448 + L1MC3 LINE L1 7203 7342 -443 3636 152 20 34 chr9 15383179 15383823 -102478804 + MER50 LTR ERV1 1 635 -99 440 236 67 61 chr9 15384322 15384487 -102478140 - L1ME LINE L1 -426 5695 5530 29 60 0 0 chr9 15384729 15384779 -102477848 + AT_rich Low_complexity Low_complexity 1 50 0 495 332 100 17 chr9 15384782 15385023 -102477604 - MIR SINE MIR 0 262 2 432 264 194 38 chr9 15385058 15385456 -102477171 - L1ME LINE L1 -1310 4836 4377 328 298 0 11 chr9 15386043 15386137 -102476490 + CT-rich Low_complexity Low_complexity 4 96 0 218 176 0 20 chr9 15386673 15386691 -102475936 + A-rich Low_complexity Low_complexity 2 19 -32 2409 107 0 0 chr9 15386691 15387000 -102475627 + AluSg SINE Alu 1 309 -1 218 176 0 20 chr9 15387000 15387032 -102475595 + A-rich Low_complexity Low_complexity 19 51 0 666 263 58 5 chr9 15387098 15387288 -102475339 + MIR SINE MIR 48 247 -15 333 118 0 0 chr9 15387643 15387694 -102474933 + (CA)n Simple_repeat Simple_repeat 2 52 0 434 264 50 57 chr9 15388134 15388274 -102474353 + MER5B DNA MER1_type 40 178 0 260 357 79 7 chr9 15388654 15388794 -102473833 - MIR SINE MIR -21 241 92 269 216 162 42 chr9 15388845 15389012 -102473615 + MER5A DNA MER1_type 3 189 0 368 265 29 10 chr9 15389078 15389180 -102473447 - MER5A DNA MER1_type -77 112 9 22 0 0 0 chr9 15389593 15389615 -102473012 + AT_rich Low_complexity Low_complexity 1 22 0 236 312 11 32 chr9 15391136 15391229 -102471398 + L2 LINE L2 2893 2983 -289 214 259 35 0 chr9 15391328 15391386 -102471241 + L2 LINE L2 3178 3237 -76 826 295 34 4 chr9 15393006 15393240 -102469387 - MIR SINE MIR -19 243 3 623 250 33 11 chr9 15394019 15394199 -102468428 - MER112 DNA MER1_type -5 255 72 582 273 32 43 chr9 15394750 15394937 -102467690 + MIR SINE MIR 47 231 -31 212 300 170 10 chr9 15397440 15397540 -102465087 - L2 LINE L2 -8 3305 3190 191 219 0 0 chr9 15398265 15398306 -102464321 - MIR SINE MIR -62 200 160 259 373 39 0 chr9 15398731 15398884 -102463743 + MIR SINE MIR 70 228 -34 228 273 15 15 chr9 15400958 15401024 -102461603 + L2 LINE L2 3243 3308 -5 237 65 0 0 chr9 15403745 15403776 -102458851 + (GA)n Simple_repeat Simple_repeat 1 31 0 195 204 0 0 chr9 15404240 15404284 -102458343 + A-rich Low_complexity Low_complexity 1 44 0 216 196 22 0 chr9 15405748 15405794 -102456833 + GA-rich Low_complexity Low_complexity 3 49 0 183 80 0 0 chr9 15407026 15407051 -102455576 + (T)n Simple_repeat Simple_repeat 1 25 0 284 333 56 0 chr9 15407269 15407359 -102455268 - L2 LINE L2 -22 3250 3156 299 233 27 14 chr9 15408772 15408845 -102453782 + MIR SINE MIR 46 119 -143 210 309 10 10 chr9 15408933 15409030 -102453597 + GA-rich Low_complexity Low_complexity 2 98 0 588 265 65 25 chr9 15409342 15409530 -102453097 + MIR SINE MIR 1 199 -63 612 244 0 0 chr9 15409530 15409665 -102452962 + L1MA10 LINE L1 6198 6332 -2 588 265 65 25 chr9 15409665 15409676 -102452951 + MIR SINE MIR 199 208 -54 322 175 31 82 chr9 15411639 15411736 -102450891 + L1MD2 LINE L1 6268 6359 0 424 267 121 9 chr9 15412531 15412647 -102449980 - L2 LINE L2 -1 3271 3143 1778 50 0 0 chr9 15412780 15412981 -102449646 + AluY SINE Alu 1 201 -110 3661 247 38 22 chr9 15412981 15414197 -102448430 - L1M4 LINE L1 -1894 4252 3018 266 326 52 22 chr9 15414249 15414384 -102448243 - L3 LINE CR1 -239 1338 1200 235 171 0 49 chr9 15414656 15414697 -102447930 + Charlie5 DNA MER1_type 2 40 -2572 198 146 24 49 chr9 15414697 15414738 -102447889 + MIR SINE MIR 36 75 -133 287 325 40 40 chr9 15415492 15415618 -102447009 + MIR3 SINE MIR 13 138 -70 203 306 0 28 chr9 15416275 15416347 -102446280 + CT-rich Low_complexity Low_complexity 1 70 0 369 288 190 19 chr9 15416689 15416894 -102445733 - MIR SINE MIR 0 262 23 248 224 75 0 chr9 15417092 15417159 -102445468 + L2 LINE L2 3242 3313 0 907 81 52 0 chr9 15418950 15419086 -102443541 + L1MA5A LINE L1 6154 6296 -1 24 0 0 0 chr9 15419213 15419237 -102443390 + AT_rich Low_complexity Low_complexity 1 24 0 281 262 203 11 chr9 15419245 15419432 -102443195 - L1ME4a LINE L1 -106 6015 5793 2416 165 70 5 chr9 15419432 15419832 -102442795 - MSTB LTR MaLR 0 426 1 8826 166 67 19 chr9 15419832 15421407 -102441220 - MSTB-int LTR MaLR 0 1651 1 2230 151 18 87 chr9 15421409 15421860 -102440767 - MSTB LTR MaLR -6 420 1 434 300 88 9 chr9 15422053 15422280 -102440347 - MLT1H LTR MaLR -244 305 61 319 286 149 30 chr9 15422333 15422501 -102440126 - L1ME4a LINE L1 -410 5711 5524 201 39 0 0 chr9 15422559 15422585 -102440042 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 596 279 81 63 chr9 15422853 15423420 -102439207 - L1MC4a LINE L1 -1978 5830 5254 1056 296 98 42 chr9 15423428 15424206 -102438421 - L1MC4a LINE L1 -941 5205 4385 1485 126 79 7 chr9 15424480 15424757 -102437870 - L1MB3 LINE L1 -3 6180 5884 22 0 0 0 chr9 15424874 15424896 -102437731 + AT_rich Low_complexity Low_complexity 1 22 0 204 125 0 0 chr9 15425304 15425336 -102437291 + (A)n Simple_repeat Simple_repeat 1 32 0 221 234 31 31 chr9 15426114 15426178 -102436449 + L2 LINE L2 3204 3267 -5 331 286 246 14 chr9 15426188 15426408 -102436219 + L3 LINE CR1 389 659 -918 282 349 9 0 chr9 15426967 15427073 -102435554 - L2 LINE L2 -4 3268 3162 187 280 40 13 chr9 15427078 15427153 -102435474 + L3 LINE CR1 676 752 -825 1585 158 76 10 chr9 15427161 15427452 -102435175 - AluJb SINE Alu -2 310 1 202 216 0 0 chr9 15427879 15427916 -102434711 + L2 LINE L2 3259 3295 -18 330 286 77 62 chr9 15428825 15429198 -102433429 - L2 LINE L2 -1 3271 2821 413 275 131 6 chr9 15429259 15429419 -102433208 + MIR SINE MIR 4 183 -79 203 156 0 0 chr9 15429519 15429551 -102433076 + (CAT)n Simple_repeat Simple_repeat 3 34 0 1705 181 0 13 chr9 15429579 15429893 -102432734 - AluJb SINE Alu 0 312 3 983 249 93 71 chr9 15430207 15430786 -102431841 + HAL1 LINE L1 1915 2506 -1 215 331 152 43 chr9 15430939 15431842 -102430785 - L2 LINE L2 -575 2739 1739 22 0 0 0 chr9 15432357 15432379 -102430248 + AT_rich Low_complexity Low_complexity 1 22 0 491 0 0 17 chr9 15432421 15432481 -102430146 + (TAGA)n Simple_repeat Simple_repeat 2 60 0 224 296 57 38 chr9 15432603 15432762 -102429865 - L2 LINE L2 -1635 1679 1518 2595 88 36 6 chr9 15432770 15433134 -102429493 + THE1C LTR MaLR 1 375 0 268 229 29 14 chr9 15433484 15433554 -102429073 - MER58 DNA MER1_type -5 2415 2345 1975 140 20 11 chr9 15433563 15433919 -102428708 + L1MB2 LINE L1 5810 6168 -3 1384 124 76 0 chr9 15434176 15434386 -102428241 + MER30 DNA MER1_type 5 230 0 1029 209 73 10 chr9 15435707 15436009 -102426618 + MER33 DNA MER1_type 3 323 -1 243 0 0 0 chr9 15437960 15437987 -102424640 + (CA)n Simple_repeat Simple_repeat 1 27 0 366 243 68 81 chr9 15438780 15438928 -102423699 - MIR3 SINE MIR -11 197 52 1039 224 175 38 chr9 15439001 15439470 -102423157 - MLT1H LTR MaLR -3 546 14 181 294 56 95 chr9 15439494 15439620 -102423007 + L2 LINE L2 2854 2974 -339 1137 286 83 36 chr9 15439714 15440319 -102422308 + HAL1 LINE L1 50 686 -1821 2204 120 3 0 chr9 15440319 15440627 -102422000 + AluSx SINE Alu 2 310 -2 234 136 0 0 chr9 15440638 15440682 -102421945 + (GAAAA)n Simple_repeat Simple_repeat 5 48 0 369 277 86 121 chr9 15440682 15440938 -102421689 + HAL1 LINE L1 667 913 -1594 226 306 82 36 chr9 15440953 15441149 -102421478 + HAL1 LINE L1 2230 2434 -73 237 213 21 0 chr9 15441720 15441767 -102420860 + GA-rich Low_complexity Low_complexity 3 50 0 2268 108 0 0 chr9 15442039 15442336 -102420291 - AluSq SINE Alu -16 297 1 9810 93 5 5 chr9 15442634 15444116 -102418511 - L1PA7 LINE L1 -2113 4033 2551 9855 79 3 0 chr9 15444116 15446227 -102416400 + L1PA7 LINE L1 4041 6154 0 219 283 67 0 chr9 15446468 15446528 -102416099 + L2 LINE L2 3208 3271 -1 194 226 172 43 chr9 15446823 15446916 -102415711 + MIR SINE MIR 151 255 -7 1846 167 0 0 chr9 15447216 15447498 -102415129 - AluJb SINE Alu -30 282 1 273 219 89 32 chr9 15447868 15447991 -102414636 + L1ME4a LINE L1 5946 6075 -46 525 16 0 0 chr9 15448309 15448371 -102414256 + (TC)n Simple_repeat Simple_repeat 2 63 0 324 70 0 0 chr9 15448370 15448413 -102414214 + (TG)n Simple_repeat Simple_repeat 2 44 0 * 2525 58 3 3 chr9 15449006 15449315 -102413312 - AluY SINE Alu -2 309 1 189 419 65 0 chr9 15449735 15449859 -102412768 + L2 LINE L2 2069 2200 -1114 302 329 80 58 chr9 15450282 15450419 -102412208 + L1M2 LINE L1 1045 1184 -5665 13792 202 40 24 chr9 15450419 15451134 -102411493 + L1MA4 LINE L1 818 1520 -5482 369 0 0 0 chr9 15451134 15451175 -102411452 + (TA)n Simple_repeat Simple_repeat 1 41 0 13792 202 40 24 chr9 15451175 15452999 -102409628 + L1MA4 LINE L1 1520 3313 -3689 216 0 0 0 chr9 15452999 15453023 -102409604 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2137 102 0 0 chr9 15453027 15453302 -102409325 - AluSx SINE Alu -37 275 1 13792 202 40 24 chr9 15453302 15454617 -102408010 + L1MA4 LINE L1 3315 4607 -2395 2335 93 0 3 chr9 15454617 15454919 -102407708 - AluSg SINE Alu -9 301 1 13792 202 40 24 chr9 15454919 15457047 -102405580 + L1MA4 LINE L1 4607 6991 -11 207 269 0 30 chr9 15457081 15457148 -102405479 + L2 LINE L2 2715 2779 -535 223 284 112 26 chr9 15457275 15457391 -102405236 + L2 LINE L2 2935 3060 -212 231 268 146 0 chr9 15457482 15457564 -102405063 + MIR SINE MIR 40 133 -75 419 292 211 10 chr9 15457587 15457796 -102404831 + MIR SINE MIR 3 253 -9 225 338 147 15 chr9 15458135 15458271 -102404356 + MIR SINE MIR 106 259 -3 189 333 144 0 chr9 15458248 15458338 -102404289 + L2 LINE L2 3202 3304 -9 * 26 0 0 0 chr9 15458458 15458484 -102404143 + AT_rich Low_complexity Low_complexity 1 26 0 840 232 121 0 chr9 15458724 15458948 -102403679 - MIR SINE MIR 0 262 12 488 288 204 0 chr9 15460365 15460556 -102402071 + MIR SINE MIR 31 260 -2 2593 53 0 0 chr9 15461542 15461844 -102400783 + AluSq SINE Alu 1 302 -11 213 121 0 0 chr9 15462052 15462085 -102400542 + (ATG)n Simple_repeat Simple_repeat 2 34 0 2924 281 116 22 chr9 15462615 15464544 -102398083 + L1MEc LINE L1 88 2198 -4198 1095 189 116 61 chr9 15464544 15464872 -102397755 + MLT1A1 LTR MaLR 3 348 -17 260 207 24 12 chr9 15464876 15464958 -102397669 + L1MEc LINE L1 2191 2273 -4123 342 282 48 27 chr9 15464969 15465157 -102397470 + Charlie1 DNA MER1_type 1465 1656 -1105 812 275 49 5 chr9 15465161 15465684 -102396943 - L1MEc LINE L1 -3764 2471 1948 23 33 0 0 chr9 15465692 15465722 -102396905 + AT_rich Low_complexity Low_complexity 1 30 0 2720 243 43 17 chr9 15465802 15466817 -102395810 + L1MEc LINE L1 2493 3534 -2681 2560 213 79 15 chr9 15467558 15468964 -102393663 + L1MB7 LINE L1 4630 6152 -32 1850 174 74 71 chr9 15468962 15469586 -102393041 + L1ME LINE L1 5204 5819 -347 * 399 41 0 0 chr9 15470971 15471020 -102391607 + (GA)n Simple_repeat Simple_repeat 2 50 0 208 269 0 0 chr9 15471072 15471150 -102391477 + (CAGA)n Simple_repeat Simple_repeat 2 79 0 30 0 0 0 chr9 15472995 15473025 -102389602 + GC_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr9 15474034 15474062 -102388565 + AT_rich Low_complexity Low_complexity 1 28 0 229 120 0 80 chr9 15474253 15474303 -102388324 + (AGGGGG)n Simple_repeat Simple_repeat 3 48 0 197 78 0 47 chr9 15478697 15478733 -102383894 - MIR SINE MIR -63 145 112 22 0 0 0 chr9 15479011 15479033 -102383594 + AT_rich Low_complexity Low_complexity 1 22 0 180 77 0 0 chr9 15480731 15480757 -102381870 + (T)n Simple_repeat Simple_repeat 1 26 0 220 340 9 19 chr9 15480860 15480966 -102381661 + MIR3 SINE MIR 87 191 -17 333 0 0 0 chr9 15481665 15481702 -102380925 + (TG)n Simple_repeat Simple_repeat 2 38 0 1971 147 110 8 chr9 15482004 15482358 -102380269 + MLT1B LTR MaLR 1 390 0 608 222 28 44 chr9 15482467 15482559 -102380068 + MER45A DNA AcHobo 1 90 -1491 2442 80 0 3 chr9 15482559 15482871 -102379756 + AluY SINE Alu 1 311 0 608 222 28 44 chr9 15482871 15482958 -102379669 + MER45A DNA AcHobo 90 177 -1 2370 212 8 12 chr9 15484533 15485038 -102377589 + L1MB8 LINE L1 5652 6154 -24 229 216 39 10 chr9 15485062 15485164 -102377463 + (TA)n Simple_repeat Simple_repeat 1 105 0 482 287 84 24 chr9 15485469 15485635 -102376992 + MLT1K LTR MaLR 12 187 -401 1795 232 27 10 chr9 15485635 15486045 -102376582 - MER63B DNA MER1_type 0 436 20 1428 259 75 25 chr9 15486052 15486531 -102376096 + MLT1D LTR MaLR 1 503 -2 324 206 175 21 chr9 15486560 15486657 -102375970 + MLT1K LTR MaLR 199 310 -278 22 80 0 0 chr9 15486818 15486868 -102375759 + AT_rich Low_complexity Low_complexity 1 50 0 2471 56 0 37 chr9 15487418 15487740 -102374887 - AluY SINE Alu -1 310 1 29 0 0 0 chr9 15487871 15487900 -102374727 + AT_rich Low_complexity Low_complexity 1 29 0 1523 201 7 7 chr9 15489498 15489806 -102372821 + AluJo SINE Alu 1 308 -4 568 236 69 0 chr9 15489842 15489986 -102372641 + MER69A DNA AcHobo 19 172 -5 216 171 49 0 chr9 15490465 15490506 -102372121 + (TATATG)n Simple_repeat Simple_repeat 3 45 0 237 184 0 0 chr9 15490506 15490555 -102372072 + LTR66 LTR ERVL 395 443 -167 960 266 91 36 chr9 15490576 15491103 -102371524 - L1ME4a LINE L1 -74 6047 5492 476 234 35 35 chr9 15491900 15492041 -102370586 + MIR SINE MIR 119 259 -3 2223 116 3 3 chr9 15493363 15493666 -102368961 - AluSg SINE Alu -5 305 3 494 334 40 35 chr9 15493983 15494354 -102368273 - L2 LINE L2 0 3272 2900 3514 30 0 0 chr9 15494493 15494898 -102367729 + L1PA7 LINE L1 5722 6126 -28 431 120 40 80 chr9 15494951 15495051 -102367576 + L1PA8 LINE L1 6077 6172 0 358 206 199 15 chr9 15495745 15495876 -102366751 + MIR SINE MIR 85 239 -23 227 303 145 0 chr9 15495957 15496033 -102366594 + L2 LINE L2 3195 3281 -32 225 160 0 60 chr9 15496036 15496086 -102366541 - MIR SINE MIR -148 114 68 358 345 71 58 chr9 15496400 15496852 -102365775 + L2 LINE L2 2325 2782 -532 244 370 94 0 chr9 15496899 15497091 -102365536 + L2 LINE L2 2841 3050 -222 2255 111 0 0 chr9 15497697 15497986 -102364641 + AluSx SINE Alu 1 289 -23 243 0 0 0 chr9 15497999 15498026 -102364601 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 290 229 18 110 chr9 15498311 15498420 -102364207 + MIR SINE MIR 25 106 -102 525 217 172 59 chr9 15498427 15498648 -102363979 + Charlie8 DNA MER1_type 2 247 -2170 235 231 123 15 chr9 15499088 15499153 -102363474 + Charlie8 DNA MER1_type 2337 2408 -9 336 111 0 0 chr9 15500509 15500563 -102362064 + (TG)n Simple_repeat Simple_repeat 1 54 0 218 254 0 0 chr9 15501074 15501129 -102361498 + CT-rich Low_complexity Low_complexity 1 55 0 1989 141 0 0 chr9 15501512 15501822 -102360805 + AluSx SINE Alu 1 310 0 636 271 104 88 chr9 15501949 15502260 -102360367 - MLT1J LTR MaLR -4 507 184 2207 103 7 10 chr9 15502260 15502562 -102360065 + AluSq SINE Alu 1 301 -12 636 271 104 88 chr9 15502562 15502749 -102359878 - MLT1J LTR MaLR -327 184 1 962 168 19 0 chr9 15502951 15503106 -102359521 - FAM SINE Alu -16 159 2 2137 130 0 3 chr9 15503403 15503702 -102358925 - AluSx SINE Alu -14 298 1 1385 206 25 11 chr9 15504124 15504401 -102358226 - AluJo SINE Alu -31 281 1 235 338 102 0 chr9 15504991 15505148 -102357479 + MIR SINE MIR 74 246 -16 2402 101 0 0 chr9 15505231 15505539 -102357088 - AluSc SINE Alu -1 308 1 207 0 0 0 chr9 15506558 15506581 -102356046 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2382 85 0 0 chr9 15506584 15506867 -102355760 - AluSq SINE Alu -30 283 1 249 309 169 0 chr9 15507606 15507742 -102354885 - MIR SINE MIR -52 210 52 848 40 0 0 chr9 15507881 15507981 -102354646 + AluSg/x SINE Alu 203 302 -7 2022 156 3 0 chr9 15508068 15508369 -102354258 - AluJb SINE Alu -4 308 7 277 176 0 15 chr9 15508662 15508755 -102353872 + L2 LINE L2 3187 3313 0 209 184 0 0 chr9 15508958 15508996 -102353631 + L2 LINE L2 3179 3216 -97 264 59 0 0 chr9 15509230 15509264 -102353363 + (GA)n Simple_repeat Simple_repeat 1 34 0 499 252 147 43 chr9 15509436 15509694 -102352933 + L1ME3A LINE L1 5554 5838 -332 603 273 20 10 chr9 15511987 15512185 -102350442 - MIR SINE MIR -21 241 42 352 226 25 57 chr9 15512434 15512593 -102350034 - L1ME4a LINE L1 -42 6079 5926 2045 155 0 0 chr9 15512669 15512965 -102349662 - AluSx SINE Alu -14 298 3 311 271 41 33 chr9 15513757 15513879 -102348748 + MER103 DNA DNA 2 124 -42 475 241 92 24 chr9 15514264 15514565 -102348062 + L1ME LINE L1 5152 5473 -755 242 298 29 29 chr9 15514582 15514686 -102347941 + L1ME LINE L1 5540 5643 -519 230 286 13 97 chr9 15514882 15515036 -102347591 + L1ME LINE L1 5647 5787 -383 633 189 0 24 chr9 15515094 15515221 -102347406 + AluJb SINE Alu 121 244 -68 652 188 11 22 chr9 15515248 15515429 -102347198 + GA-rich Low_complexity Low_complexity 2 180 0 530 303 17 11 chr9 15515777 15515952 -102346675 + MER5B DNA MER1_type 1 176 -2 363 231 0 0 chr9 15517131 15517209 -102345418 + MIR SINE MIR 83 160 -102 861 233 24 75 chr9 15517230 15517437 -102345190 + L1MC3 LINE L1 6772 6957 -828 2276 168 3 3 chr9 15517437 15517801 -102344826 + MLT1A1 LTR MaLR 1 364 -1 861 233 24 75 chr9 15517801 15517924 -102344703 + L1MC3 LINE L1 6957 7085 -700 342 306 0 10 chr9 15517932 15518030 -102344597 + MLT1F1 LTR MaLR 35 131 -436 699 157 60 15 chr9 15518038 15518172 -102344455 + L1MC3 LINE L1 7203 7342 -443 3959 159 20 44 chr9 15518172 15518915 -102343712 + MER50 LTR ERV1 1 725 -9 2159 174 34 5 chr9 15518915 15519329 -102343298 + L1MC3 LINE L1 7351 7776 -9 1765 172 31 0 chr9 15519330 15519620 -102343007 + AluJb SINE Alu 1 299 -13 253 306 74 0 chr9 15519628 15519736 -102342891 + MIR SINE MIR 147 262 0 212 308 0 0 chr9 15520894 15520946 -102341681 + (TCCA)n Simple_repeat Simple_repeat 2 53 0 366 322 56 21 chr9 15520949 15521092 -102341535 - L2 LINE L2 -9 3263 3116 2443 127 25 0 chr9 15521208 15521563 -102341064 - THE1B LTR MaLR 0 364 1 292 290 84 0 chr9 15521616 15521723 -102340904 + MIR SINE MIR 28 143 -119 252 0 0 0 chr9 15522611 15522639 -102339988 + (T)n Simple_repeat Simple_repeat 1 28 0 204 200 0 0 chr9 15523976 15524011 -102338616 + polypyrimidine Low_complexity Low_complexity 2 36 0 182 333 14 0 chr9 15524850 15524919 -102337708 - MIR SINE MIR 0 262 193 992 191 89 57 chr9 15525853 15526167 -102336460 + MER33 DNA MER1_type 1 324 0 290 367 25 25 chr9 15528326 15528446 -102334181 + L2 LINE L2 3143 3262 -10 30 27 0 0 chr9 15529730 15529767 -102332860 + AT_rich Low_complexity Low_complexity 1 37 0 273 57 0 0 chr9 15530388 15530423 -102332204 + (TCCCC)n Simple_repeat Simple_repeat 4 38 0 381 253 11 0 chr9 15531170 15531257 -102331370 - L2 LINE L2 0 3272 3185 284 320 62 65 chr9 15531492 15531817 -102330810 + LTR67 LTR ERVL 83 406 -151 1068 252 95 27 chr9 15531833 15532245 -102330382 + MLT1J1 LTR MaLR 4 443 -3 802 323 35 15 chr9 15533522 15533860 -102328767 + MLT1J1 LTR MaLR 79 423 -23 368 241 23 45 chr9 15533909 15534042 -102328585 + LTR67 LTR ERVL 418 547 -10 1625 210 3 3 chr9 15534570 15534865 -102327762 - AluJo SINE Alu -12 300 6 309 299 9 0 chr9 15535491 15535598 -102327029 - MLT1J LTR MaLR -385 126 19 25 0 0 0 chr9 15535640 15535665 -102326962 + AT_rich Low_complexity Low_complexity 1 25 0 976 237 19 10 chr9 15535675 15535882 -102326745 - MIR SINE MIR -21 241 33 1207 148 14 0 chr9 15536024 15536241 -102326386 + MER63 DNA MER1_type 836 1055 -6 1952 198 88 29 chr9 15538589 15539080 -102323547 + MLT1F LTR MaLR 12 531 -11 311 336 151 0 chr9 15539158 15539277 -102323350 + L2 LINE L2 3136 3272 0 277 363 55 7 chr9 15540307 15540453 -102322174 + MIR SINE MIR 21 173 -89 2329 100 10 0 chr9 15541039 15541340 -102321287 + AluSc SINE Alu 1 304 -5 546 306 60 0 chr9 15541417 15541583 -102321044 + MIR SINE MIR 76 250 -12 2111 209 43 82 chr9 15541808 15542417 -102320210 - MLT1E LTR MaLR -2 591 7 342 366 32 21 chr9 15542817 15543003 -102319624 + L3b LINE CR1 1230 1417 -166 540 178 10 0 chr9 15543024 15543125 -102319502 + Tigger3b DNA MER2_type 1 102 -1129 5412 114 29 8 chr9 15543128 15543769 -102318858 + Tigger3b DNA MER2_type 284 951 -2077 2376 92 3 3 chr9 15543769 15544074 -102318553 - AluSg SINE Alu -5 305 1 5412 114 29 8 chr9 15544074 15544337 -102318290 + Tigger3b DNA MER2_type 951 1207 -24 422 350 0 62 chr9 15544533 15544658 -102317969 + MER5A DNA MER1_type 8 118 -71 2411 65 10 10 chr9 15544658 15544964 -102317663 - AluSq SINE Alu -7 306 1 422 350 0 62 chr9 15544964 15545032 -102317595 + MER5A DNA MER1_type 118 189 0 203 133 0 0 chr9 15546172 15546202 -102316425 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 558 231 136 3 chr9 15546326 15546476 -102316151 + MER45A DNA AcHobo 1 171 -7 210 375 52 0 chr9 15546807 15546903 -102315724 - MIR SINE MIR -56 152 52 2236 118 3 0 chr9 15547048 15547354 -102315273 + AluSx SINE Alu 1 307 -5 201 196 0 0 chr9 15548034 15548080 -102314547 + CT-rich Low_complexity Low_complexity 4 49 0 225 316 0 13 chr9 15549525 15549601 -102313026 - MLT1K LTR MaLR -329 259 185 633 158 123 0 chr9 15551236 15551382 -102311245 - MER103 DNA DNA -1 165 2 216 0 0 0 chr9 15552491 15552515 -102310112 + (T)n Simple_repeat Simple_repeat 1 24 0 300 328 78 9 chr9 15552626 15552742 -102309885 + L2 LINE L2 3149 3272 0 244 366 106 14 chr9 15553274 15553416 -102309211 + L2 LINE L2 3112 3266 -6 216 97 0 0 chr9 15554141 15554172 -102308455 + (TAA)n Simple_repeat Simple_repeat 2 32 0 1018 272 16 8 chr9 15554175 15554429 -102308198 - MIR SINE MIR -4 258 3 2183 140 7 3 chr9 15554821 15555129 -102307498 - AluJb SINE Alu -3 309 1 235 280 107 0 chr9 15556203 15556278 -102306349 - MIR SINE MIR -133 129 47 1905 149 0 0 chr9 15557458 15557765 -102304862 - AluSx SINE Alu 0 307 1 191 241 56 37 chr9 15558537 15558591 -102304036 - MIR SINE MIR -149 113 59 404 270 85 55 chr9 15558986 15559279 -102303348 + MLT1K LTR MaLR 186 487 -101 659 0 0 0 chr9 15560823 15560895 -102301732 - tRNA-His-CAC tRNA tRNA -3 72 1 239 304 0 0 chr9 15562152 15562221 -102300406 + MER113 DNA MER1_type? 4 72 -449 1032 230 39 9 chr9 15562257 15562487 -102300140 + MIR SINE MIR 21 257 -5 554 268 100 21 chr9 15562495 15562835 -102299792 + MER113 DNA MER1_type? 114 480 -41 609 303 120 12 chr9 15562877 15563201 -102299426 - MLT1I LTR MaLR -48 361 3 261 371 33 26 chr9 15563641 15563792 -102298835 - L2 LINE L2 0 3272 3121 585 265 15 46 chr9 15563876 15564072 -102298555 + MIR3 SINE MIR 6 195 -13 342 313 54 14 chr9 15564271 15564418 -102298209 + L3b LINE CR1 1328 1480 -103 321 169 0 0 chr9 15564895 15564954 -102297673 + (TG)n Simple_repeat Simple_repeat 1 59 0 1703 165 4 0 chr9 15565972 15566245 -102296382 + AluJb SINE Alu 1 274 -38 811 213 59 0 chr9 15566267 15566436 -102296191 + MIR SINE MIR 80 258 -4 188 278 89 33 chr9 15567079 15567169 -102295458 + L2 LINE L2 3159 3253 -19 240 143 0 0 chr9 15568018 15568060 -102294567 + (A)n Simple_repeat Simple_repeat 1 42 0 200 188 0 0 chr9 15568462 15568494 -102294133 + polypyrimidine Low_complexity Low_complexity 2 33 0 572 274 111 13 chr9 15568835 15569061 -102293566 - MIR SINE MIR -3 259 12 320 176 24 47 chr9 15569186 15569271 -102293356 + MIR SINE MIR 110 192 -70 1225 171 121 44 chr9 15569318 15569709 -102292918 - MLT1C LTR MaLR 0 467 3 386 317 64 36 chr9 15570153 15570434 -102292193 + L2 LINE L2 2188 2476 -838 268 352 40 40 chr9 15570650 15570775 -102291852 + L2 LINE L2 3143 3267 -5 587 291 15 10 chr9 15570999 15571195 -102291432 - L2 LINE L2 -964 2350 2154 188 241 48 60 chr9 15571325 15571408 -102291219 - L2 LINE L2 -1064 2250 2169 618 213 6 25 chr9 15571828 15571988 -102290639 - L1ME3A LINE L1 -213 5940 5784 1054 264 56 60 chr9 15572004 15572633 -102289994 - L1ME3A LINE L1 -1794 4335 3710 680 311 70 39 chr9 15572691 15573430 -102289197 - L1ME3A LINE L1 -4579 1731 970 230 210 33 161 chr9 15573636 15573941 -102288686 - L1MC5 LINE L1 -52 7909 7644 680 299 59 29 chr9 15574002 15574457 -102288170 - L1ME3A LINE L1 -5204 915 447 22 0 0 0 chr9 15575270 15575292 -102287335 + AT_rich Low_complexity Low_complexity 1 22 0 734 251 17 0 chr9 15576160 15576335 -102286292 - MER5B DNA MER1_type 0 178 1 2067 108 0 18 chr9 15576531 15576817 -102285810 + AluSx SINE Alu 1 281 -31 207 0 0 0 chr9 15576824 15576847 -102285780 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2120 78 0 0 chr9 15576864 15577148 -102285479 - L1PA6 LINE L1 -11 6143 5860 568 205 91 124 chr9 15577174 15577656 -102284971 + MER110A LTR ERV1 1 466 -2 198 277 179 18 chr9 15577831 15577943 -102284684 - MIR SINE MIR -99 163 34 267 186 39 108 chr9 15578233 15578335 -102284292 - L1MC5 LINE L1 -48 7913 7819 328 233 63 50 chr9 15578367 15578413 -102284214 - L1MC5 LINE L1 -222 7739 7695 180 0 0 0 chr9 15578413 15578433 -102284194 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 328 233 63 50 chr9 15578433 15578545 -102284082 - L1MC5 LINE L1 -266 7695 7579 693 36 0 0 chr9 15579218 15579313 -102283314 + (GGAAA)n Simple_repeat Simple_repeat 1 179 0 693 36 0 0 chr9 15579313 15579397 -102283230 + (GGAAA)n Simple_repeat Simple_repeat 5 88 0 2144 79 43 0 chr9 15580684 15580961 -102281666 + AluSc SINE Alu 1 289 -20 900 263 62 36 chr9 15581660 15581964 -102280663 + MLT1I LTR MaLR 98 409 0 246 184 0 0 chr9 15581985 15582034 -102280593 + L2 LINE L2 3265 3313 0 317 155 17 0 chr9 15582992 15583050 -102279577 - MER116 DNA Mariner -21 59 1 1211 292 47 43 chr9 15583334 15584035 -102278592 + L1MC4a LINE L1 5255 5958 -1850 19435 37 1 0 chr9 15584254 15587411 -102275216 + L1PA4 LINE L1 2995 6152 -3 24 32 0 0 chr9 15587539 15587570 -102275057 + AT_rich Low_complexity Low_complexity 1 31 0 550 343 0 27 chr9 15587580 15587799 -102274828 + L2 LINE L2 2665 2877 -437 2546 61 0 0 chr9 15589154 15589465 -102273162 - AluY SINE Alu 0 311 1 25 65 0 0 chr9 15589935 15589981 -102272646 + AT_rich Low_complexity Low_complexity 1 46 0 259 150 20 60 chr9 15589989 15590089 -102272538 + (TTAA)n Simple_repeat Simple_repeat 3 98 0 317 277 96 0 chr9 15590129 15590306 -102272321 + L1M4 LINE L1 4411 4604 -1542 2576 39 13 0 chr9 15590538 15590843 -102271784 - AluY SINE Alu -2 309 1 576 278 116 5 chr9 15591634 15591850 -102270777 + MIR SINE MIR 23 262 0 324 0 0 0 chr9 15592456 15592492 -102270135 + (CA)n Simple_repeat Simple_repeat 2 37 0 876 128 12 35 chr9 15592650 15592822 -102269805 - MER20 DNA MER1_type -26 193 26 266 213 46 28 chr9 15594450 15594558 -102268069 + (TTCA)n Simple_repeat Simple_repeat 3 112 0 413 291 48 0 chr9 15594562 15594665 -102267962 - L2 LINE L2 -4 3309 3202 423 298 146 6 chr9 15594677 15594848 -102267779 - MIR SINE MIR -48 214 20 291 294 94 25 chr9 15595603 15595763 -102266864 - MIR SINE MIR -26 236 66 662 232 20 13 chr9 15596931 15597082 -102265545 + MIR SINE MIR 79 230 -32 477 265 54 30 chr9 15597650 15597816 -102264811 + MIR3 SINE MIR 21 190 -18 1263 186 18 65 chr9 15599197 15599457 -102263170 + MER5C DNA MER1_type 3 245 -79 2388 58 0 3 chr9 15599457 15599749 -102262878 + AluY SINE Alu 16 306 -5 1263 186 18 65 chr9 15599749 15599826 -102262801 + MER5C DNA MER1_type 245 324 0 1950 184 37 3 chr9 15601016 15601369 -102261258 - MLT1A1 LTR MaLR 0 365 1 1353 194 95 0 chr9 15601373 15601656 -102260971 - MLT1A1-int LTR MaLR -6 1729 1420 1830 174 22 3 chr9 15601693 15602015 -102260612 - MLT2B1 LTR ERVL -192 328 1 650 211 58 23 chr9 15602024 15602195 -102260432 - MIR SINE MIR -68 194 18 386 292 94 21 chr9 15605441 15605819 -102256808 - L1MC4a LINE L1 -302 5819 5529 269 276 114 9 chr9 15606468 15606573 -102256054 + MIR SINE MIR 30 145 -63 362 126 0 17 chr9 15606761 15606827 -102255800 + L1MB7 LINE L1 6049 6113 -71 234 242 0 0 chr9 15606830 15606896 -102255731 + GA-rich Low_complexity Low_complexity 1 66 0 192 40 0 0 chr9 15606911 15606936 -102255691 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 222 326 130 22 chr9 15606979 15607209 -102255418 - MIR SINE MIR -6 256 2 1144 254 37 59 chr9 15607906 15608062 -102254565 + LTR16C LTR ERVL 96 254 -237 180 0 0 0 chr9 15608062 15608082 -102254545 + (TG)n Simple_repeat Simple_repeat 2 21 0 * 321 26 0 0 chr9 15608081 15608119 -102254508 + (TA)n Simple_repeat Simple_repeat 1 38 0 1144 254 37 59 chr9 15608082 15608367 -102254260 + LTR16C LTR ERVL 254 491 0 183 120 0 0 chr9 15608845 15608870 -102253757 + L3b LINE CR1 1531 1555 -28 21 0 0 0 chr9 15610097 15610118 -102252509 + AT_rich Low_complexity Low_complexity 1 21 0 429 289 224 10 chr9 15610369 15610570 -102252057 + MIR SINE MIR 11 254 -8 366 218 57 65 chr9 15611032 15611156 -102251471 - L2 LINE L2 0 3313 3191 180 333 0 0 chr9 15611574 15611628 -102250999 - L2 LINE L2 -1 3312 3259 1283 209 57 43 chr9 15611693 15611880 -102250747 - MLT1A2 LTR MaLR 0 374 191 240 35 0 0 chr9 15611880 15611909 -102250718 + (GA)n Simple_repeat Simple_repeat 2 30 0 1283 209 57 43 chr9 15611909 15612090 -102250537 - MLT1A2 LTR MaLR -183 191 1 357 289 26 158 chr9 15612385 15612478 -102250149 - L2 LINE L2 0 3272 3168 2257 124 0 0 chr9 15612478 15612785 -102249842 + AluSx SINE Alu 3 309 -3 357 289 26 158 chr9 15612785 15613110 -102249517 - L2 LINE L2 -104 3168 2909 370 301 71 68 chr9 15613139 15613448 -102249179 - L2 LINE L2 -1153 2161 1852 240 35 0 0 chr9 15613580 15613609 -102249018 + (CA)n Simple_repeat Simple_repeat 2 30 0 326 257 46 0 chr9 15613668 15613777 -102248850 + L1ME4a LINE L1 6005 6118 -3 1649 178 52 14 chr9 15614975 15615262 -102247365 + AluJo SINE Alu 1 298 -14 230 339 16 48 chr9 15615262 15615386 -102247241 + MER5A DNA MER1_type 44 163 -26 235 314 85 8 chr9 15615842 15615960 -102246667 + MIR SINE MIR 122 248 -14 25 95 0 0 chr9 15616624 15616698 -102245929 + AT_rich Low_complexity Low_complexity 1 74 0 545 268 131 58 chr9 15616705 15617018 -102245609 - L1MC4a LINE L1 -1942 5866 5531 933 273 121 13 chr9 15617175 15617931 -102244696 + L1ME LINE L1 4968 5818 -348 633 291 138 0 chr9 15617941 15618130 -102244497 + MIR SINE MIR 28 242 -20 2647 119 19 21 chr9 15618899 15618965 -102243662 - MSTA LTR MaLR -1 427 362 2329 79 0 0 chr9 15618965 15619310 -102243317 + AluY SINE Alu 1 311 0 2647 119 19 21 chr9 15619310 15619671 -102242956 - MSTA LTR MaLR -66 362 1 214 262 243 0 chr9 15619743 15619850 -102242777 + MIR SINE MIR 14 146 -116 196 241 0 69 chr9 15619951 15620009 -102242618 - MIR SINE MIR -136 72 19 748 260 78 17 chr9 15622757 15622988 -102239639 + MIR SINE MIR 5 249 -13 1709 169 30 30 chr9 15623008 15623369 -102239258 - MER46B DNA MER2_type 0 236 1 420 218 129 67 chr9 15624769 15624962 -102237665 + MLT1K LTR MaLR 374 578 -10 361 258 114 53 chr9 15624986 15625118 -102237509 - MIR3 SINE MIR -64 144 5 603 102 0 0 chr9 15625648 15625736 -102236891 + (TCCC)n Simple_repeat Simple_repeat 4 91 0 329 235 122 10 chr9 15625744 15625842 -102236785 - L2 LINE L2 -10 3262 3154 516 176 0 0 chr9 15625872 15625974 -102236653 + (TG)n Simple_repeat Simple_repeat 1 102 0 318 344 19 17 chr9 15626434 15626624 -102236003 - MIR SINE MIR -50 212 22 191 288 188 12 chr9 15626941 15627021 -102235606 + L2 LINE L2 2825 2918 -395 * 666 236 14 0 chr9 15627013 15627161 -102235466 - MIR SINE MIR -100 162 13 187 103 0 0 chr9 15627551 15627580 -102235047 + L2 LINE L2 3285 3313 0 227 268 98 24 chr9 15628372 15628454 -102234173 + MIR SINE MIR 116 203 -59 986 265 57 16 chr9 15628935 15629252 -102233375 - MER46C DNA MER2_type -3 335 6 31 26 0 0 chr9 15629583 15629621 -102233006 + AT_rich Low_complexity Low_complexity 1 38 0 8226 168 14 47 chr9 15629623 15632277 -102230350 - L1PA16 LINE L1 -16 6150 3614 739 197 94 18 chr9 15632808 15633031 -102229596 + MER69 DNA AcHobo 2153 2392 -134 181 205 77 0 chr9 15633202 15633241 -102229386 - L2 LINE L2 -26 3246 3205 22 80 0 0 chr9 15633911 15633961 -102228666 + AT_rich Low_complexity Low_complexity 1 50 0 363 73 0 0 chr9 15634823 15634878 -102227749 + (CA)n Simple_repeat Simple_repeat 2 56 0 249 203 40 0 chr9 15634961 15635035 -102227592 + (TA)n Simple_repeat Simple_repeat 1 77 0 203 224 0 15 chr9 15635075 15635142 -102227485 + (TATATG)n Simple_repeat Simple_repeat 5 70 0 444 254 61 18 chr9 15635965 15636079 -102226548 - L2 LINE L2 -5 3308 3190 2212 105 3 0 chr9 15636793 15637079 -102225548 - AluSx SINE Alu -25 287 1 1882 131 0 34 chr9 15637957 15638268 -102224359 + AluSx SINE Alu 1 301 0 290 247 65 21 chr9 15638747 15638840 -102223787 + MIR SINE MIR 96 192 -70 1179 163 13 96 chr9 15639022 15639148 -102223479 + AluJo SINE Alu 15 150 -162 2301 97 0 0 chr9 15639148 15639448 -102223179 + AluSx SINE Alu 1 300 -12 1179 163 13 96 chr9 15639448 15639634 -102222993 + AluJo SINE Alu 150 301 -11 231 238 36 0 chr9 15640172 15640256 -102222371 + (CTA)n Simple_repeat Simple_repeat 3 89 0 436 149 53 75 chr9 15640344 15640438 -102222189 - AluJb SINE Alu -23 289 198 311 343 73 56 chr9 15642467 15642645 -102219982 - MIR3 SINE MIR -15 193 13 23 0 0 0 chr9 15643462 15643485 -102219142 + AT_rich Low_complexity Low_complexity 1 23 0 211 212 0 45 chr9 15643686 15643752 -102218875 + G-rich Low_complexity Low_complexity 3 65 0 997 212 0 0 chr9 15644760 15644949 -102217678 + MER5A DNA MER1_type 1 189 0 387 127 0 0 chr9 15646452 15646515 -102216112 + (CA)n Simple_repeat Simple_repeat 2 64 0 26 30 0 0 chr9 15646520 15646553 -102216074 + AT_rich Low_complexity Low_complexity 1 33 0 687 197 41 0 chr9 15647420 15647567 -102215060 + LTR65 LTR ERV1 18 170 -499 699 236 26 73 chr9 15649140 15649187 -102213440 - MER58A DNA MER1_type -2198 222 174 2139 104 14 0 chr9 15649187 15649490 -102213137 - AluSx SINE Alu 0 307 1 699 236 26 73 chr9 15649490 15649674 -102212953 - MER58A DNA MER1_type -2246 174 1 623 250 110 15 chr9 15649723 15649923 -102212704 + MIR SINE MIR 34 252 -10 323 342 125 47 chr9 15650159 15650972 -102211655 + L2 LINE L2 2332 3268 -4 381 248 13 129 chr9 15653215 15653333 -102209294 + L1MC4 LINE L1 7743 7873 -169 2235 90 0 17 chr9 15653333 15653632 -102208995 + AluSg SINE Alu 1 294 -16 381 248 13 129 chr9 15653632 15653815 -102208812 + L1MC4 LINE L1 7873 8009 -33 226 333 0 0 chr9 15653846 15653912 -102208715 + MER5B DNA MER1_type 50 115 -63 2501 236 39 55 chr9 15654053 15654848 -102207779 + L1M3e LINE L1 7 813 -6294 2067 132 0 0 chr9 15654848 15655137 -102207490 + AluSq SINE Alu 1 289 -24 2501 236 39 55 chr9 15655137 15656107 -102206520 + L1M3e LINE L1 813 2923 -4184 2228 105 0 22 chr9 15657328 15657642 -102204985 + AluSx SINE Alu 1 307 -5 237 271 0 14 chr9 15658632 15658702 -102203925 + (TA)n Simple_repeat Simple_repeat 2 70 0 248 302 81 0 chr9 15659118 15659204 -102203423 - MIR SINE MIR -3 259 167 209 227 182 36 chr9 15660523 15660633 -102201994 + MIR SINE MIR 127 252 -10 191 200 0 67 chr9 15660602 15660647 -102201980 + L2 LINE L2 3226 3267 -5 * 213 154 0 0 chr9 15660766 15660805 -102201822 + T-rich Low_complexity Low_complexity 1 39 0 41762 34 22 21 chr9 15661240 15667135 -102195492 + L1PA2 LINE L1 1 5905 -250 26 30 0 0 chr9 15667486 15667519 -102195108 + AT_rich Low_complexity Low_complexity 1 33 0 249 167 0 33 chr9 15667677 15667737 -102194890 + L1ME3 LINE L1 6104 6161 -1 28 0 0 0 chr9 15668066 15668094 -102194533 + AT_rich Low_complexity Low_complexity 1 28 0 258 132 0 0 chr9 15669672 15669725 -102192902 + (TC)n Simple_repeat Simple_repeat 2 54 0 342 0 0 0 chr9 15669835 15669873 -102192754 + (CA)n Simple_repeat Simple_repeat 2 39 0 24 32 0 0 chr9 15670916 15670947 -102191680 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr9 15673661 15673684 -102188943 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr9 15675496 15675519 -102187108 + AT_rich Low_complexity Low_complexity 1 23 0 24 53 0 0 chr9 15676232 15676270 -102186357 + AT_rich Low_complexity Low_complexity 1 38 0 180 299 149 0 chr9 15676850 15676917 -102185710 + MIR3 SINE MIR 113 189 -19 1321 178 9 33 chr9 15678828 15679043 -102183584 + L1 LINE L1 4983 5189 -957 1625 161 0 58 chr9 15679043 15679354 -102183273 + AluJo SINE Alu 1 293 -19 1321 178 9 33 chr9 15679354 15679470 -102183157 + L1 LINE L1 5189 5306 -840 268 329 0 0 chr9 15680867 15680940 -102181687 + MLT1F LTR MaLR 1 73 -469 606 129 10 0 chr9 15681309 15681410 -102181217 - AluJ SINE Alu -20 292 191 812 176 7 0 chr9 15681410 15681552 -102181075 - AluJ SINE Alu -165 147 5 564 270 28 24 chr9 15681585 15681796 -102180831 - L1ME LINE L1 -347 5774 5563 1286 248 118 40 chr9 15682035 15682584 -102180043 - MLT1G1 LTR MaLR 0 595 4 4402 163 52 30 chr9 15682888 15684029 -102178598 + L1MB1 LINE L1 4991 6168 0 884 175 6 35 chr9 15684613 15684784 -102177843 - FRAM SINE Alu 0 166 1 2636 164 51 15 chr9 15684852 15685401 -102177226 - L1M2 LINE L1 -4381 2828 2260 11177 94 9 2 chr9 15685401 15687784 -102174843 - L1PA7 LINE L1 0 6469 4076 4613 107 0 5 chr9 15687785 15688412 -102174215 - L1PA7 LINE L1 -5834 627 4 256 100 25 0 chr9 15688416 15688456 -102174171 - THE1A LTR MaLR -120 235 195 1640 158 0 40 chr9 15688502 15688805 -102173822 + AluJb SINE Alu 5 295 -17 27 0 0 0 chr9 15688808 15688835 -102173792 + AT_rich Low_complexity Low_complexity 1 27 0 6424 225 149 5 chr9 15688835 15690774 -102171853 - L1M2 LINE L1 -4977 2232 1 2038 174 74 71 chr9 15691318 15691942 -102170685 - L1ME LINE L1 -347 5819 5204 2008 229 42 4 chr9 15691938 15692531 -102170096 - L1ME1 LINE L1 -30 6154 5504 * 1311 186 129 0 chr9 15692798 15693077 -102169550 + MER58B DNA MER1_type 11 325 -16 635 142 25 8 chr9 15694180 15694300 -102168327 + L1MB8 LINE L1 6045 6166 -12 22 70 0 0 chr9 15694786 15694829 -102167798 + AT_rich Low_complexity Low_complexity 1 43 0 27 0 0 0 chr9 15695407 15695434 -102167193 + AT_rich Low_complexity Low_complexity 1 27 0 22 56 0 0 chr9 15695595 15695631 -102166996 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr9 15695892 15695914 -102166713 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr9 15696174 15696203 -102166424 + AT_rich Low_complexity Low_complexity 1 29 0 476 194 73 16 chr9 15697143 15697267 -102165360 + L1ME3 LINE L1 5589 5719 -443 737 198 36 44 chr9 15697275 15697477 -102165150 + L1ME3 LINE L1 5957 6161 -9 298 283 12 30 chr9 15697830 15697976 -102164651 + MER5A DNA MER1_type 1 143 -35 570 356 47 47 chr9 15698058 15698398 -102164229 - L2 LINE L2 0 3272 2933 225 333 25 0 chr9 15698700 15698781 -102163846 - L2 LINE L2 -792 2522 2440 818 272 115 59 chr9 15700961 15701628 -102160999 + L1ME2 LINE L1 5448 6151 -13 317 282 65 51 chr9 15701660 15701876 -102160751 + L1MC4 LINE L1 7822 8040 -2 25 0 0 0 chr9 15702213 15702238 -102160389 + AT_rich Low_complexity Low_complexity 1 25 0 645 189 76 80 chr9 15703569 15703710 -102158917 + MER112 DNA MER1_type 18 159 -101 707 179 126 0 chr9 15703710 15703861 -102158766 - FAM SINE Alu -2 173 4 645 189 76 80 chr9 15703861 15703957 -102158670 + MER112 DNA MER1_type 159 254 -6 304 350 10 10 chr9 15703958 15704061 -102158566 - L2 LINE L2 -517 2797 2695 252 0 0 0 chr9 15704211 15704239 -102158388 + (TG)n Simple_repeat Simple_repeat 2 29 0 28410 50 2 4 chr9 15704294 15708695 -102153932 + L1PA7 LINE L1 1761 6154 0 218 292 62 0 chr9 15708931 15708996 -102153631 + L2 LINE L2 3203 3271 -1 205 226 172 43 chr9 15709291 15709384 -102153243 + MIR SINE MIR 151 255 -7 233 303 149 46 chr9 15709388 15709563 -102153064 - MER117 DNA MER1_type -1 196 4 1810 167 0 0 chr9 15709684 15709966 -102152661 - AluJb SINE Alu -30 282 1 320 204 144 15 chr9 15710336 15710468 -102152159 + L1ME4a LINE L1 5946 6094 -27 233 246 0 0 chr9 15710834 15710895 -102151732 + L1MA4A LINE L1 3954 4014 -2132 5914 154 40 17 chr9 15710911 15712949 -102149678 + L1MA4A LINE L1 4222 6298 -5 240 111 0 0 chr9 15713608 15713644 -102148983 + (A)n Simple_repeat Simple_repeat 1 36 0 210 384 80 8 chr9 15713851 15713976 -102148651 - L2 LINE L2 -1 3271 3138 2004 158 15 40 chr9 15715741 15716141 -102146486 + MLT1B LTR MaLR 1 390 0 1972 101 7 37 chr9 15716256 15716554 -102146073 + AluSx SINE Alu 1 289 -23 1585 269 157 51 chr9 15716699 15718047 -102144580 - L1M4 LINE L1 -869 5277 3787 249 224 0 0 chr9 15718093 15718151 -102144476 + (CATATA)n Simple_repeat Simple_repeat 2 59 0 742 188 35 14 chr9 15718272 15718416 -102144211 + MER106B DNA MER1_type 1 147 -912 1460 273 89 30 chr9 15718498 15719578 -102143049 + L1ME3A LINE L1 4735 5886 -284 1302 263 143 18 chr9 15719848 15720282 -102142345 + L2 LINE L2 2826 3313 0 857 295 61 14 chr9 15720645 15721004 -102141623 + L2 LINE L2 714 1089 -2225 2081 286 202 17 chr9 15721009 15722071 -102140556 + L2 LINE L2 2043 3313 0 26 74 0 0 chr9 15722084 15722138 -102140489 + AT_rich Low_complexity Low_complexity 1 54 0 1110 178 33 24 chr9 15722275 15722488 -102140139 - MER20 DNA MER1_type -4 215 1 24 32 0 0 chr9 15722551 15722582 -102140045 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr9 15724448 15724470 -102138157 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chr9 15724589 15724618 -102138009 + AT_rich Low_complexity Low_complexity 1 29 0 342 302 39 8 chr9 15724713 15724837 -102137790 + MIR SINE MIR 37 165 -65 391 228 51 0 chr9 15726982 15727061 -102135566 + MER91C DNA MER1_type 25 107 -33 465 288 114 27 chr9 15727817 15728373 -102134254 + L1M4c LINE L1 846 1432 -4848 238 203 81 27 chr9 15728654 15728728 -102133899 - L2 LINE L2 -87 3226 3149 22 56 0 0 chr9 15729371 15729407 -102133220 + AT_rich Low_complexity Low_complexity 1 36 0 24 53 0 0 chr9 15731543 15731581 -102131046 + AT_rich Low_complexity Low_complexity 1 38 0 14359 142 25 8 chr9 15732182 15732524 -102130103 - Tigger1 DNA MER2_type 0 2418 2083 2130 109 3 0 chr9 15732524 15732817 -102129810 + AluSc SINE Alu 10 303 -6 14359 142 25 8 chr9 15732817 15734803 -102127824 - Tigger1 DNA MER2_type -335 2083 48 291 28 0 0 chr9 15734803 15734839 -102127788 + (CA)n Simple_repeat Simple_repeat 2 37 0 14359 142 25 8 chr9 15734839 15734863 -102127764 - Tigger1 DNA MER2_type -2370 48 26 779 203 85 85 chr9 15734935 15735216 -102127411 + L1M4 LINE L1 4733 5013 -1133 342 268 229 16 chr9 15735362 15735545 -102127082 - MIR SINE MIR -10 252 31 1098 215 9 14 chr9 15735563 15735782 -102126845 - MER58A DNA MER1_type 0 224 7 2312 26 7 4 chr9 15736530 15736802 -102125825 - AluY SINE Alu 0 311 39 632 149 75 8 chr9 15737162 15737296 -102125331 + L1M4 LINE L1 5547 5689 -489 10681 182 26 19 chr9 15737299 15739334 -102123293 + L1MA8 LINE L1 723 2771 -4795 239 293 67 0 chr9 15739449 15739524 -102123103 - Tigger5 DNA MER2_type -7 2316 2237 436 230 11 0 chr9 15739535 15739622 -102123005 + Tigger5 DNA MER2_type 1 88 -2235 300 218 0 0 chr9 15739680 15739735 -102122892 - Tigger5 DNA MER2_type -2267 56 2 9812 204 24 53 chr9 15739736 15741965 -102120662 + L1MA8 LINE L1 3093 4891 -2674 3900 92 29 2 chr9 15741965 15742516 -102120111 + L1PA10 LINE L1 5589 6160 -8 9812 204 24 53 chr9 15742516 15744301 -102118326 + L1MA8 LINE L1 4891 6727 -838 1392 211 11 8 chr9 15744302 15744563 -102118064 + Tigger7 DNA MER2_type 2 263 -2224 516 198 0 10 chr9 15744568 15744664 -102117963 + Tigger7 DNA MER2_type 2397 2491 0 4641 166 45 18 chr9 15744664 15745620 -102117007 + L1MA8 LINE L1 6726 7707 -3 286 247 101 107 chr9 15745882 15746060 -102116567 - MER5B DNA MER1_type 0 178 2 191 337 133 0 chr9 15746104 15746202 -102116425 + L2 LINE L2 3162 3272 0 207 277 0 0 chr9 15747154 15747201 -102115426 + MIR3 SINE MIR 139 185 -23 2058 122 27 3 chr9 15747391 15747687 -102114940 + AluSx SINE Alu 1 303 -9 189 147 0 0 chr9 15747869 15747903 -102114724 + (TATG)n Simple_repeat Simple_repeat 3 36 0 2069 124 0 0 chr9 15748070 15748378 -102114249 + AluSx SINE Alu 1 308 0 776 271 58 19 chr9 15748536 15748794 -102113833 + MLT1L LTR MaLR 343 610 -5 224 238 12 0 chr9 15748881 15748965 -102113662 + (TA)n Simple_repeat Simple_repeat 1 85 0 496 307 193 5 chr9 15748986 15749204 -102113423 + MIR SINE MIR 1 259 -3 337 325 116 47 chr9 15749216 15749536 -102113091 - L2 LINE L2 -1 3312 2971 305 318 8 76 chr9 15749571 15749703 -102112924 + L2 LINE L2 3150 3272 0 313 304 20 10 chr9 15749861 15749963 -102112664 + L2 LINE L2 3178 3280 -33 541 266 52 31 chr9 15750286 15750335 -102112292 + L2 LINE L2 3113 3159 -154 189 74 0 0 chr9 15750335 15750362 -102112265 + (ATTG)n Simple_repeat Simple_repeat 2 28 0 541 266 52 31 chr9 15750362 15750504 -102112123 + L2 LINE L2 3159 3308 -5 242 242 137 32 chr9 15750877 15750972 -102111655 - MIR SINE MIR -45 217 113 460 276 66 7 chr9 15751217 15751369 -102111258 + MIR SINE MIR 86 246 -16 262 129 32 16 chr9 15751407 15751469 -102111158 - MER116 DNA Mariner 0 80 18 26 30 0 0 chr9 15751984 15752017 -102110610 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr9 15752069 15752090 -102110537 + AT_rich Low_complexity Low_complexity 1 21 0 771 121 0 0 chr9 15752921 15753061 -102109566 + (TTCC)n Simple_repeat Simple_repeat 3 142 0 425 340 35 0 chr9 15753163 15753307 -102109320 - MIR3 SINE MIR -10 198 50 223 222 0 0 chr9 15754142 15754187 -102108440 + L2 LINE L2 3261 3305 -8 423 0 0 0 chr9 15756556 15756603 -102106024 + (CA)n Simple_repeat Simple_repeat 1 47 0 1401 186 57 18 chr9 15757676 15757956 -102104671 - AluJo SINE Alu -15 297 7 222 355 11 32 chr9 15758293 15758386 -102104241 - L2 LINE L2 -36 3236 3146 186 164 194 15 chr9 15760001 15760068 -102102559 - L2 LINE L2 0 3272 3194 2246 129 0 0 chr9 15760159 15760470 -102102157 + AluSx SINE Alu 1 311 -1 205 292 163 34 chr9 15761584 15761793 -102100834 + L2 LINE L2 688 923 -2391 * 265 251 133 59 chr9 15761766 15761859 -102100768 + L2 LINE L2 3096 3181 -132 2474 63 0 3 chr9 15761859 15762160 -102100467 - AluY SINE Alu -11 300 1 265 251 133 59 chr9 15762160 15762269 -102100358 + L2 LINE L2 3181 3313 0 410 331 64 67 chr9 15762570 15762664 -102099963 + L2 LINE L2 1023 1116 -2198 2037 130 0 0 chr9 15762664 15762965 -102099662 + AluSx SINE Alu 3 303 -9 410 331 64 67 chr9 15762965 15763305 -102099322 + L2 LINE L2 1116 1456 -1858 2229 218 21 43 chr9 15765648 15765991 -102096636 - L1M4 LINE L1 -3339 2807 2481 2059 109 11 3 chr9 15765991 15766310 -102096317 + AluSq SINE Alu 1 321 0 2229 218 21 43 chr9 15766310 15766584 -102096043 - L1M4 LINE L1 -3665 2481 2202 21 0 0 0 chr9 15767153 15767174 -102095453 + AT_rich Low_complexity Low_complexity 1 21 0 1463 169 45 22 chr9 15767183 15767497 -102095130 - L1MB7 LINE L1 -7 6177 5857 192 304 0 51 chr9 15767664 15767743 -102094884 + MIR3 SINE MIR 126 200 -8 272 340 0 32 chr9 15768097 15768191 -102094436 + L2 LINE L2 3220 3310 -3 21 0 0 0 chr9 15770740 15770761 -102091866 + AT_rich Low_complexity Low_complexity 1 21 0 901 179 92 20 chr9 15771458 15771653 -102090974 + MIR SINE MIR 54 262 0 2321 106 0 0 chr9 15772419 15772721 -102089906 + AluSx SINE Alu 1 302 -10 1772 183 0 0 chr9 15772810 15773095 -102089532 - AluJb SINE Alu -27 285 1 573 140 22 0 chr9 15773141 15773277 -102089350 + (TA)n Simple_repeat Simple_repeat 1 139 0 497 253 75 6 chr9 15773498 15773672 -102088955 - L1ME LINE L1 -319 5802 5617 21 0 0 0 chr9 15774529 15774550 -102088077 + AT_rich Low_complexity Low_complexity 1 21 0 320 111 69 42 chr9 15774717 15774789 -102087838 + L1MA7 LINE L1 6218 6291 0 25 0 0 0 chr9 15774789 15774814 -102087813 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr9 15774936 15774959 -102087668 + AT_rich Low_complexity Low_complexity 1 23 0 217 322 119 28 chr9 15776611 15776754 -102085873 + MIR SINE MIR 57 212 -50 25 31 0 0 chr9 15777739 15777771 -102084856 + AT_rich Low_complexity Low_complexity 1 32 0 1907 244 64 40 chr9 15777935 15778593 -102084034 - L1ME2 LINE L1 -6 6158 5475 2510 104 16 8 chr9 15778593 15778978 -102083649 + L1PA13 LINE L1 5776 6163 0 1907 244 64 40 chr9 15778978 15779319 -102083308 - L1ME2 LINE L1 -689 5475 5144 268 39 481 0 chr9 15779801 15779853 -102082774 + MADE1 DNA Mariner 1 77 -3 286 172 62 31 chr9 15779902 15779966 -102082661 + L2 LINE L2 3247 3312 -1 27 0 0 0 chr9 15781283 15781310 -102081317 + AT_rich Low_complexity Low_complexity 1 27 0 1676 160 0 38 chr9 15785058 15785351 -102077276 + AluJb SINE Alu 1 282 -30 261 306 27 48 chr9 15785751 15785898 -102076729 - L2 LINE L2 -15 3298 3155 239 0 32 0 chr9 15786541 15786572 -102076055 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 897 171 51 0 chr9 15788168 15788343 -102074284 + MLT1C LTR MaLR 1 184 -283 1031 114 0 0 chr9 15788343 15788474 -102074153 + AluSg SINE Alu 1 131 -179 928 207 18 50 chr9 15788579 15788801 -102073826 + AluJb SINE Alu 95 309 -3 2157 43 0 0 chr9 15789285 15789543 -102073084 - L1PA3 LINE L1 0 6155 5898 2115 117 18 47 chr9 15790381 15790467 -102072160 - L1MA8 LINE L1 0 6291 6204 2112 117 9 25 chr9 15790467 15790784 -102071843 - AluSx SINE Alu 0 312 1 2115 117 18 47 chr9 15790784 15791081 -102071546 - L1MA8 LINE L1 -87 6204 5919 515 198 25 20 chr9 15792453 15792700 -102069927 + CT-rich Low_complexity Low_complexity 1 248 0 420 174 49 21 chr9 15792725 15792869 -102069758 + CT-rich Low_complexity Low_complexity 4 151 0 1626 152 7 40 chr9 15792878 15793155 -102069472 - AluJb SINE Alu -44 268 1 2528 50 0 0 chr9 15793790 15794092 -102068535 + AluY SINE Alu 1 302 -9 21 0 0 0 chr9 15794663 15794684 -102067943 + AT_rich Low_complexity Low_complexity 1 21 0 207 93 0 70 chr9 15795290 15795333 -102067294 + (TTTTTG)n Simple_repeat Simple_repeat 1 40 0 2065 131 7 3 chr9 15795741 15796039 -102066588 - AluSq SINE Alu -12 301 3 276 53 0 0 chr9 15797148 15797186 -102065441 + (CA)n Simple_repeat Simple_repeat 2 39 0 2280 139 8 16 chr9 15798462 15798829 -102063798 + THE1B LTR MaLR 1 364 0 239 309 74 0 chr9 15799165 15799246 -102063381 - L2 LINE L2 -4 3309 3223 320 0 25 0 chr9 15799367 15799407 -102063220 + (TATG)n Simple_repeat Simple_repeat 3 43 0 278 229 14 0 chr9 15799407 15799477 -102063150 + MER116 DNA Mariner 8 78 -2 767 144 8 0 chr9 15799958 15800076 -102062551 - AluJb SINE Alu -31 281 163 246 238 73 46 chr9 15800213 15800364 -102062263 + L1ME4a LINE L1 5964 6118 -3 192 323 54 39 chr9 15801518 15801648 -102060979 + L2 LINE L2 3179 3310 -3 603 317 72 73 chr9 15803232 15803838 -102058789 + L2 LINE L2 2613 3272 0 349 283 36 13 chr9 15804612 15804756 -102057871 + MIR SINE MIR 2 149 -62 858 125 0 0 chr9 15804999 15805119 -102057508 + AluSg/x SINE Alu 176 295 -17 948 218 76 8 chr9 15805136 15805398 -102057229 + MLT1C LTR MaLR 188 467 0 219 330 177 23 chr9 15805836 15806051 -102056576 + L2 LINE L2 2977 3224 -48 2114 114 3 0 chr9 15807446 15807743 -102054884 + AluSx SINE Alu 1 298 -14 2179 108 0 0 chr9 15809400 15809687 -102052940 + AluSq SINE Alu 1 287 -26 335 212 0 59 chr9 15810241 15810326 -102052301 - MIR SINE MIR -65 197 118 2750 183 27 24 chr9 15811717 15812265 -102050362 + MER44D DNA MER2_type 1 605 0 215 303 0 30 chr9 15812355 15812454 -102050173 + GA-rich Low_complexity Low_complexity 1 96 0 776 235 16 0 chr9 15813355 15813538 -102049089 - MER20 DNA MER1_type -28 191 6 655 116 0 0 chr9 15813590 15813685 -102048942 + AluSg/x SINE Alu 204 298 -12 360 297 72 9 chr9 15813982 15814093 -102048534 + L2 LINE L2 3196 3313 0 2097 113 43 60 chr9 15814135 15814505 -102048122 + THE1B LTR MaLR 1 364 0 585 278 11 0 chr9 15814749 15814925 -102047702 + MER20 DNA MER1_type 40 217 -2 207 211 0 0 chr9 15815073 15815111 -102047516 + MIR SINE MIR 92 129 -133 392 266 162 26 chr9 15815545 15815699 -102046928 + MIR SINE MIR 82 256 -6 261 241 46 35 chr9 15816338 15816425 -102046202 + MIR SINE MIR 162 249 -13 216 290 226 16 chr9 15817241 15817365 -102045262 - MIR SINE MIR -108 154 5 421 186 39 20 chr9 15817623 15817725 -102044902 + MIR SINE MIR 90 193 -69 22 35 0 0 chr9 15818429 15818458 -102044169 + AT_rich Low_complexity Low_complexity 1 29 0 344 198 33 44 chr9 15818683 15818774 -102043853 + L2 LINE L2 3224 3313 0 238 49 24 24 chr9 15819113 15819154 -102043473 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 189 229 62 0 chr9 15821121 15821169 -102041458 + L2 LINE L2 3187 3237 -35 441 281 41 34 chr9 15821200 15821346 -102041281 + L2 LINE L2 3163 3309 -4 255 233 27 67 chr9 15821953 15822103 -102040524 + L1MC4a LINE L1 5787 5930 -1878 374 231 81 131 chr9 15822246 15822666 -102039961 + L1ME4a LINE L1 5442 5919 -202 1224 205 11 32 chr9 15824209 15824487 -102038140 + MLT2D LTR ERVL 86 357 -57 468 0 0 0 chr9 15824487 15824539 -102038088 + (TC)n Simple_repeat Simple_repeat 1 52 0 323 264 145 14 chr9 15824762 15824939 -102037688 + MIR SINE MIR 2 209 -53 427 333 103 10 chr9 15825051 15825246 -102037381 - MIR SINE MIR -30 232 20 2158 127 0 7 chr9 15825399 15825707 -102036920 + AluSx SINE Alu 1 306 -6 316 255 28 28 chr9 15826727 15826833 -102035794 + MIR3 SINE MIR 85 190 -18 185 319 97 14 chr9 15826963 15827035 -102035592 - MIR3 SINE MIR -116 92 15 24 67 0 0 chr9 15827571 15827616 -102035011 + AT_rich Low_complexity Low_complexity 1 45 0 30 27 0 0 chr9 15828266 15828303 -102034324 + AT_rich Low_complexity Low_complexity 1 37 0 1951 148 10 0 chr9 15828309 15828606 -102034021 + AluJb SINE Alu 6 305 -7 798 63 16 24 chr9 15828608 15828735 -102033892 + (GGGAA)n Simple_repeat Simple_repeat 2 127 0 685 203 8 0 chr9 15828737 15828865 -102033762 + FLAM_C SINE Alu 2 130 -3 265 370 56 0 chr9 15831062 15831170 -102031457 + MIR SINE MIR 32 145 -63 430 172 126 13 chr9 15831356 15831507 -102031120 + MER113 DNA MER1_type? 4 171 -350 191 61 30 0 chr9 15831576 15831609 -102031018 + (CA)n Simple_repeat Simple_repeat 2 35 0 2258 92 3 3 chr9 15831685 15831979 -102030648 - AluSq SINE Alu -19 294 1 308 341 30 15 chr9 15832054 15832186 -102030441 + MER5B DNA MER1_type 15 148 -30 353 179 85 94 chr9 15832060 15832166 -102030461 - MER5A DNA MER1_type -22 167 63 728 255 86 29 chr9 15832702 15832945 -102029682 - MIR SINE MIR 0 262 6 407 217 9 12 chr9 15834199 15834308 -102028319 - L1MA9 LINE L1 -2 6289 6184 1195 290 69 13 chr9 15834768 15835304 -102027323 + L1ME3A LINE L1 5301 5867 -303 2905 145 50 2 chr9 15835470 15835932 -102026695 + L1MB2 LINE L1 5681 6164 -7 541 342 5 5 chr9 15836107 15836291 -102026336 - MIR SINE MIR -78 184 1 1282 166 43 9 chr9 15836489 15836700 -102025927 + MER20 DNA MER1_type 1 218 -1 261 0 0 0 chr9 15837258 15837287 -102025340 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 451 292 87 10 chr9 15837423 15837618 -102025009 + MLT1J1 LTR MaLR 1 210 -236 21 0 0 0 chr9 15837979 15838000 -102024627 + AT_rich Low_complexity Low_complexity 1 21 0 34 42 0 0 chr9 15838469 15838517 -102024110 + AT_rich Low_complexity Low_complexity 1 48 0 214 309 0 0 chr9 15838797 15838852 -102023775 + GA-rich Low_complexity Low_complexity 2 56 0 1761 116 0 45 chr9 15841817 15842113 -102020514 - AluSg SINE Alu 0 310 27 423 38 0 0 chr9 15842248 15842301 -102020326 + (CA)n Simple_repeat Simple_repeat 2 54 0 208 241 69 78 chr9 15843186 15843302 -102019325 - MIR SINE MIR -56 206 92 377 267 139 35 chr9 15844203 15844405 -102018222 - LTR16C LTR ERVL -89 402 180 2370 100 3 0 chr9 15844714 15845024 -102017603 + AluY SINE Alu 1 311 0 785 251 86 25 chr9 15845154 15845397 -102017230 - MIR SINE MIR 0 262 5 494 248 202 14 chr9 15845637 15845855 -102016772 + MIR SINE MIR 2 260 -2 2040 114 19 19 chr9 15846358 15846673 -102015954 + THE1C LTR MaLR 61 375 0 461 200 27 0 chr9 15847835 15847945 -102014682 + L1M4 LINE L1 4642 4754 -1392 1117 193 40 40 chr9 15848120 15848369 -102014258 + AluJo SINE Alu 20 268 -44 1121 163 0 0 chr9 15848457 15848623 -102014004 - AluSg/x SINE Alu -22 290 125 1972 121 0 0 chr9 15848725 15848990 -102013637 - AluSx SINE Alu -44 268 4 22 70 0 0 chr9 15849209 15849252 -102013375 + AT_rich Low_complexity Low_complexity 1 43 0 1155 176 87 23 chr9 15849465 15849794 -102012833 + MSTD LTR MaLR 1 396 0 205 226 68 75 chr9 15849894 15850027 -102012600 + MIR SINE MIR 118 249 -13 24 0 0 0 chr9 15850696 15850720 -102011907 + AT_rich Low_complexity Low_complexity 1 24 0 370 257 79 46 chr9 15851032 15851184 -102011443 + MIR SINE MIR 33 189 -73 572 200 43 21 chr9 15853191 15853331 -102009296 - MER103 DNA DNA -1 165 23 21 0 0 0 chr9 15854028 15854049 -102008578 + AT_rich Low_complexity Low_complexity 1 21 0 396 271 203 21 chr9 15854745 15854937 -102007690 - MER102b DNA MER1_type -27 314 88 2372 134 26 0 chr9 15854967 15855317 -102007310 + THE1B LTR MaLR 6 364 0 273 91 23 0 chr9 15856519 15856563 -102006064 + MADE1 DNA Mariner 36 80 0 661 158 22 125 chr9 15856564 15856748 -102005879 + MLT1C LTR MaLR 303 467 0 24 32 0 0 chr9 15858216 15858247 -102004380 + AT_rich Low_complexity Low_complexity 1 31 0 2126 136 0 0 chr9 15858251 15858552 -102004075 + AluSq SINE Alu 1 301 -12 238 169 34 0 chr9 15858556 15858615 -102004012 + L1MC4 LINE L1 6640 6700 -1342 2057 113 20 0 chr9 15859142 15859435 -102003192 - AluSx SINE Alu -13 299 1 1300 201 22 128 chr9 15859645 15860053 -102002574 + MLT1A1 LTR MaLR 1 365 0 7803 201 67 24 chr9 15860066 15861691 -102000936 + MLT1A1-int LTR MaLR 36 1730 -5 237 250 88 0 chr9 15861741 15861809 -102000818 + MLT1A1 LTR MaLR 292 365 0 192 352 19 0 chr9 15861843 15861897 -102000730 + L2 LINE L2 3121 3175 -97 607 234 120 17 chr9 15861943 15862118 -102000509 + MIR SINE MIR 57 249 -13 200 333 0 48 chr9 15862124 15862208 -102000419 + L2 LINE L2 3193 3272 0 1754 173 130 8 chr9 15862457 15862810 -101999817 + MSTD LTR MaLR 1 396 0 1366 113 0 0 chr9 15863661 15863855 -101998772 + LTR9B LTR ERV1 451 644 0 2159 216 31 48 chr9 15863856 15864371 -101998256 + HUERS-P3b LTR ERV1 2 507 -6911 4202 126 3 10 chr9 15864401 15865053 -101997574 + HUERS-P3b LTR ERV1 764 1483 -5935 184 227 107 0 chr9 15865053 15865128 -101997499 - MER5C DNA MER1_type -241 83 1 6571 110 31 9 chr9 15865128 15866127 -101996500 + HUERS-P3b LTR ERV1 1559 2642 -4776 2491 180 33 2 chr9 15866127 15866555 -101996072 - LTR8 LTR ERV1 -250 441 1 6073 87 1 20 chr9 15866555 15867372 -101995255 + HUERS-P3b LTR ERV1 3073 3874 -3544 * 16512 107 28 9 chr9 15867365 15869920 -101992707 + HUERS-P3b LTR ERV1 2123 7411 -7 3535 92 32 43 chr9 15869921 15870485 -101992142 + LTR9B LTR ERV1 1 558 -86 318 50 0 0 chr9 15870485 15870525 -101992102 + (CA)n Simple_repeat Simple_repeat 1 40 0 464 314 57 31 chr9 15870928 15871122 -101991505 - MIR SINE MIR -13 249 51 231 36 0 0 chr9 15871531 15871559 -101991068 + (CA)n Simple_repeat Simple_repeat 1 28 0 204 358 75 33 chr9 15871724 15871844 -101990783 - L2 LINE L2 -10 3262 3138 259 320 205 24 chr9 15872156 15872493 -101990134 - L2 LINE L2 -676 2638 2241 2681 96 5 40 chr9 15873366 15873741 -101988886 - THE1B LTR MaLR -2 362 1 633 274 155 9 chr9 15873967 15874186 -101988441 - MIR SINE MIR 0 262 12 337 320 8 23 chr9 15875118 15875246 -101987381 + MIR SINE MIR 53 178 -84 282 296 122 17 chr9 15875846 15875961 -101986666 + MIR SINE MIR 28 154 -108 1796 187 35 140 chr9 15875962 15876528 -101986099 + MLT2B3 LTR ERVL 1 507 -47 309 109 0 0 chr9 15876529 15876575 -101986052 + (TAGG)n Simple_repeat Simple_repeat 1 46 0 276 232 0 0 chr9 15876580 15876636 -101985991 + MLT2B3 LTR ERVL 465 520 0 187 139 28 0 chr9 15876678 15876714 -101985913 + MIR SINE MIR 226 262 0 618 205 26 53 chr9 15876740 15876891 -101985736 + MER5A DNA MER1_type 1 147 -42 839 277 36 5 chr9 15876918 15877142 -101985485 + MIR SINE MIR 20 250 -12 2335 90 3 0 chr9 15877267 15877566 -101985061 - AluSx SINE Alu -12 300 1 2409 107 0 0 chr9 15878337 15878646 -101983981 - AluSx SINE Alu -3 309 1 3286 71 0 12 chr9 15879163 15879585 -101983042 + L1PA8 LINE L1 5755 6171 -1 201 162 0 0 chr9 15879707 15879744 -101982883 + T-rich Low_complexity Low_complexity 5 41 0 443 143 0 12 chr9 15880426 15880510 -101982117 + (GGGA)n Simple_repeat Simple_repeat 3 85 0 187 268 18 0 chr9 15880946 15881002 -101981625 + L3b LINE CR1 1256 1312 -271 198 277 0 0 chr9 15881577 15881624 -101981003 + MIR SINE MIR 103 149 -113 904 195 32 45 chr9 15882153 15882374 -101980253 + MER20 DNA MER1_type 2 219 0 488 335 58 11 chr9 15883191 15883382 -101979245 + L3b LINE CR1 1249 1448 -135 795 104 0 0 chr9 15883470 15883576 -101979051 + U6 snRNA snRNA 1 106 -1 1424 70 11 0 chr9 15883577 15883763 -101978864 + L1PA10 LINE L1 5964 6151 -17 504 295 46 43 chr9 15883864 15884193 -101978434 + MER102b DNA MER1_type 4 333 -8 637 265 24 12 chr9 15884754 15884924 -101977703 - MER5B DNA MER1_type 0 178 7 427 285 65 25 chr9 15884926 15885126 -101977501 + MIR SINE MIR 22 229 -33 1719 166 17 27 chr9 15885452 15885748 -101976879 + AluJo SINE Alu 6 298 -14 306 279 111 17 chr9 15887316 15887488 -101975139 + L1MEc LINE L1 2216 2403 -3993 14593 60 2 3 chr9 15887852 15889879 -101972748 - L1P LINE L1 -2446 3700 1675 235 256 110 0 chr9 15891051 15891133 -101971494 - MIR SINE MIR -61 201 111 2148 142 0 0 chr9 15893554 15893856 -101968771 + AluSx SINE Alu 1 302 -10 342 0 0 0 chr9 15895014 15895052 -101967575 + (CA)n Simple_repeat Simple_repeat 1 38 0 189 74 0 0 chr9 15896679 15896706 -101965921 + (CA)n Simple_repeat Simple_repeat 2 28 0 22 35 0 0 chr9 15897325 15897354 -101965273 + AT_rich Low_complexity Low_complexity 1 29 0 2327 91 0 0 chr9 15897356 15897654 -101964973 - AluY SINE Alu -13 298 1 282 149 0 0 chr9 15897660 15897707 -101964920 - AluJo SINE Alu -166 136 90 1245 265 91 3 chr9 15898140 15898502 -101964125 + L2 LINE L2 2046 2439 -875 1139 250 63 16 chr9 15898552 15899032 -101963595 + MLT1E LTR MaLR 1 593 0 1514 272 49 43 chr9 15899032 15899682 -101962945 + L2 LINE L2 2520 3194 -119 552 86 0 12 chr9 15899682 15899763 -101962864 + MADE1 DNA Mariner 1 80 0 1514 272 49 43 chr9 15899763 15899884 -101962743 + L2 LINE L2 3194 3313 0 2153 129 0 3 chr9 15899979 15900282 -101962345 + AluSq SINE Alu 1 302 -11 338 285 72 12 chr9 15900583 15900835 -101961792 + L1ME LINE L1 5635 5818 -303 1388 162 139 35 chr9 15901031 15901370 -101961257 + MLT1A2 LTR MaLR 1 374 0 2315 110 7 0 chr9 15901427 15901736 -101960891 + AluSx SINE Alu 1 311 -1 965 261 76 58 chr9 15902765 15903251 -101959376 + MLT1J LTR MaLR 3 497 -14 2137 115 23 10 chr9 15903557 15903862 -101958765 - AluSx SINE Alu -3 309 1 929 98 0 0 chr9 15903911 15904034 -101958593 + AluSg/x SINE Alu 176 298 -14 416 269 130 43 chr9 15904258 15904466 -101958161 + MIR SINE MIR 37 262 0 803 165 0 0 chr9 15904788 15904909 -101957718 + FLAM_C SINE Alu 1 121 -22 2218 59 0 11 chr9 15906432 15906703 -101955924 - AluY SINE Alu -9 302 35 652 216 196 5 chr9 15906981 15907185 -101955442 + MIR SINE MIR 11 253 -9 632 328 87 52 chr9 15907729 15908423 -101954204 - L1 LINE L1 -987 5159 4446 2173 98 0 0 chr9 15909513 15909799 -101952828 + AluSx SINE Alu 27 312 0 2265 41 0 0 chr9 15910456 15910724 -101951903 - AluY SINE Alu -3 308 41 256 83 21 0 chr9 15910914 15910962 -101951665 - L1MA8 LINE L1 -5 6286 6238 1688 162 3 14 chr9 15910962 15911252 -101951375 - AluJo SINE Alu -15 297 11 279 322 33 25 chr9 15911980 15912101 -101950526 - MER5A DNA MER1_type 0 189 68 198 71 0 0 chr9 15912258 15912286 -101950341 + (CAT)n Simple_repeat Simple_repeat 1 28 0 329 357 52 7 chr9 15912294 15912448 -101950179 - MIR SINE MIR -12 250 90 607 213 18 18 chr9 15912545 15912583 -101950044 + L1ME LINE L1 5625 5662 -500 2132 182 65 5 chr9 15912583 15912985 -101949642 - MSTB LTR MaLR 0 426 1 607 213 18 18 chr9 15912985 15913115 -101949512 + L1ME LINE L1 5661 5793 -369 2309 110 0 0 chr9 15913156 15913466 -101949161 - AluSg SINE Alu 0 310 1 440 287 91 32 chr9 15913478 15913819 -101948808 - L1ME LINE L1 -301 5820 5460 192 125 0 0 chr9 15914024 15914056 -101948571 + (A)n Simple_repeat Simple_repeat 1 32 0 1383 161 59 59 chr9 15914248 15914553 -101948074 + AluJb SINE Alu 4 308 -4 205 349 47 0 chr9 15915343 15915449 -101947178 - MIR SINE MIR -23 239 129 1892 127 0 0 chr9 15915474 15915727 -101946900 - AluSq SINE Alu -60 253 1 759 290 67 8 chr9 15915729 15915967 -101946660 - MIR SINE MIR -6 256 5 393 315 109 18 chr9 15916587 15916917 -101945710 - L1ME4a LINE L1 -228 5893 5534 710 262 34 52 chr9 15917345 15917850 -101944777 - MER39 LTR ERV1 -3 640 5 327 246 35 9 chr9 15918021 15918135 -101944492 - MER103 DNA DNA -4 162 46 180 0 0 0 chr9 15918183 15918203 -101944424 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 320 293 43 64 chr9 15918907 15919075 -101943552 - L2 LINE L2 -1 3312 3147 634 227 0 0 chr9 15919075 15919207 -101943420 + FLAM_A SINE Alu 1 132 -1 320 293 43 64 chr9 15919207 15919226 -101943401 - L2 LINE L2 -166 3147 3129 715 21 0 0 chr9 15919589 15919684 -101942943 + MER41A LTR ERV1 402 496 -58 363 94 0 2 chr9 15919724 15919779 -101942848 + MER41A LTR ERV1 501 554 0 267 154 320 13 chr9 15919779 15919857 -101942770 + MER41A-int LTR ERV1 1 102 -5844 4955 120 49 5 chr9 15919869 15920671 -101941956 + MER41A-int LTR ERV1 4 840 -5106 2574 138 45 31 chr9 15920671 15920791 -101941836 + MER41A-int LTR ERV1 1567 1684 -6132 204 40 0 0 chr9 15920791 15920816 -101941811 + (TC)n Simple_repeat Simple_repeat 2 26 0 2574 138 45 31 chr9 15920816 15921316 -101941311 + MER41A-int LTR ERV1 1684 3757 -4059 * 12892 87 19 6 chr9 15921305 15923558 -101939069 + MER41A-int LTR ERV1 2856 5944 -2 3247 82 2 25 chr9 15923558 15923893 -101938734 + MER41A LTR ERV1 1 323 -231 2361 95 0 3 chr9 15923893 15924198 -101938429 + AluSg SINE Alu 1 304 -6 3247 82 2 25 chr9 15924198 15924339 -101938288 + MER41A LTR ERV1 323 466 -88 415 211 232 7 chr9 15924786 15924928 -101937699 - MIR SINE MIR 0 262 89 296 233 0 0 chr9 15925030 15925090 -101937537 - MIR SINE MIR -73 135 76 1795 172 0 16 chr9 15925220 15925523 -101937104 - AluJo SINE Alu -14 298 1 349 284 41 47 chr9 15925798 15925967 -101936660 + MIR SINE MIR 89 256 -6 21 36 0 0 chr9 15926003 15926031 -101936596 + AT_rich Low_complexity Low_complexity 1 28 0 1287 125 64 50 chr9 15926037 15926089 -101936538 + L1MC2 LINE L1 6060 6110 -234 2171 114 13 0 chr9 15926089 15926387 -101936240 + AluSx SINE Alu 1 302 -10 1287 125 64 50 chr9 15926387 15926614 -101936013 + L1MC2 LINE L1 6110 6343 -1 205 231 64 77 chr9 15927557 15927635 -101934992 + MER91C DNA MER1_type 32 108 -32 613 156 28 9 chr9 15927850 15927959 -101934668 - MER5B DNA MER1_type -67 111 1 22 35 0 0 chr9 15928711 15928740 -101933887 + AT_rich Low_complexity Low_complexity 1 29 0 197 275 87 0 chr9 15929408 15929477 -101933150 + MIR SINE MIR 110 184 -78 1542 199 20 7 chr9 15929479 15929775 -101932852 - AluJb SINE Alu -12 300 1 264 296 89 37 chr9 15931925 15932060 -101930567 + MLT1I LTR MaLR 1 142 -267 304 233 14 0 chr9 15932276 15932349 -101930278 + MLT1I LTR MaLR 316 389 -20 1236 128 10 5 chr9 15932657 15932852 -101929775 + AluSg/x SINE Alu 108 303 -9 439 128 13 26 chr9 15933351 15933429 -101929198 - MADE1 DNA Mariner -3 77 1 697 75 0 19 chr9 15934426 15934533 -101928094 + (TTCC)n Simple_repeat Simple_repeat 1 105 0 183 80 0 0 chr9 15934533 15934558 -101928069 + (TC)n Simple_repeat Simple_repeat 1 25 0 1730 163 10 27 chr9 15934558 15934858 -101927769 - AluJo SINE Alu -17 295 1 190 266 31 16 chr9 15934988 15935052 -101927575 + L2 LINE L2 3208 3272 0 1693 134 10 51 chr9 15935305 15935597 -101927030 + AluSx SINE Alu 1 280 -32 539 263 285 0 chr9 15935727 15935955 -101926672 + L1ME3 LINE L1 5866 6158 -4 1687 185 0 17 chr9 15935981 15936268 -101926359 + AluJo SINE Alu 5 286 -26 557 39 0 13 chr9 15936271 15936348 -101926279 + (TAGA)n Simple_repeat Simple_repeat 3 78 0 182 293 69 17 chr9 15936366 15936424 -101926203 - MIR SINE MIR -108 100 40 349 251 140 48 chr9 15936505 15936840 -101925787 + L1ME4a LINE L1 5726 6091 -30 2352 169 65 0 chr9 15937013 15937756 -101924871 + L1M1 LINE L1 14 959 -6606 * 6888 106 19 14 chr9 15937753 15938887 -101923740 + L1MA3 LINE L1 5167 6305 0 28 29 0 0 chr9 15939855 15939890 -101922737 + AT_rich Low_complexity Low_complexity 1 35 0 31963 110 12 57 chr9 15941304 15947744 -101914883 + L1PA7 LINE L1 1431 7572 -1 426 276 206 27 chr9 15949105 15949580 -101913047 + L2 LINE L2 1385 1944 -1370 1814 185 70 22 chr9 15949628 15950086 -101912541 - MER31A LTR ERV1 0 543 5 1144 271 171 35 chr9 15950087 15950802 -101911825 + L2 LINE L2 2029 2840 -474 309 283 33 33 chr9 15950846 15950938 -101911689 + LTR67 LTR ERVL 99 190 -367 745 237 17 78 chr9 15951334 15951455 -101911172 + MIR SINE MIR 44 146 -116 1694 180 0 24 chr9 15951455 15951749 -101910878 + AluJo SINE Alu 3 289 -23 745 237 17 78 chr9 15951749 15951859 -101910768 + MIR SINE MIR 146 261 -1 289 371 62 35 chr9 15951895 15952264 -101910363 + L2 LINE L2 2932 3310 -3 212 283 83 55 chr9 15952449 15952465 -101910162 - MIR SINE MIR -46 216 202 414 0 0 0 chr9 15952465 15952511 -101910116 + (TATG)n Simple_repeat Simple_repeat 2 47 0 1626 178 33 4 chr9 15952511 15952786 -101909841 - AluJo SINE Alu -27 285 3 212 283 83 55 chr9 15952786 15952913 -101909714 - MIR SINE MIR -59 203 68 568 213 133 7 chr9 15952930 15953080 -101909547 + MIR SINE MIR 58 226 -36 3676 153 35 13 chr9 15953170 15953805 -101908822 + MER51A LTR ERV1 1 640 0 767 280 19 5 chr9 15954890 15955097 -101907530 - MIR SINE MIR -21 241 32 2575 105 18 7 chr9 15955153 15955562 -101907065 + LTR12 LTR ERV1 98 713 -1 2348 173 106 9 chr9 15955562 15958413 -101904214 - SATR1 Satellite Satellite -2 3126 1 2260 171 110 19 chr9 15958441 15959765 -101902862 - SATR1 Satellite Satellite -1 1444 1 2376 183 14 5 chr9 15959765 15960197 -101902430 + LTR22 LTR ERVK 2 437 -143 30230 65 4 12 chr9 15960197 15965015 -101897612 + L1PA6 LINE L1 1382 6153 -1 2505 159 148 9 chr9 15965015 15966376 -101896251 - SATR1 Satellite Satellite -24 1551 1 1246 206 235 2 chr9 15966391 15966852 -101895775 + SATR1 Satellite Satellite 1 568 -140 1737 145 0 4 chr9 15966863 15967125 -101895502 - AluSx SINE Alu -51 261 1 27 0 0 0 chr9 15967408 15967435 -101895192 + AT_rich Low_complexity Low_complexity 1 27 0 973 196 0 0 chr9 15967444 15967602 -101895025 + AluJb SINE Alu 129 286 -26 1957 48 4 0 chr9 15967892 15968123 -101894504 + AluY SINE Alu 1 232 -79 292 279 0 0 chr9 15968376 15968444 -101894183 - L2 LINE L2 -248 3065 2998 321 327 36 0 chr9 15968745 15968855 -101893772 - MIR SINE MIR -62 146 33 231 344 42 11 chr9 15968882 15969071 -101893556 - L2 LINE L2 0 3313 3119 3372 164 22 3 chr9 15969572 15970165 -101892462 + L1MB2 LINE L1 5512 6115 -56 1954 111 14 14 chr9 15970395 15970674 -101891953 - AluSg SINE Alu -31 279 1 22 0 0 0 chr9 15970674 15970696 -101891931 + AT_rich Low_complexity Low_complexity 1 22 0 265 333 12 0 chr9 15971463 15971547 -101891080 - L2 LINE L2 0 3313 3229 799 266 37 33 chr9 15971557 15971801 -101890826 - LTR40b LTR ERVL -6 456 212 205 331 70 25 chr9 15972004 15972161 -101890466 - L2 LINE L2 -422 2892 2729 180 216 0 180 chr9 15973618 15973729 -101888898 - MIR3 SINE MIR -11 197 107 2144 120 0 0 chr9 15974208 15974499 -101888128 + AluSx SINE Alu 16 306 -6 192 264 51 42 chr9 15974862 15975007 -101887620 + L2 LINE L2 2363 2979 -293 2167 140 0 0 chr9 15975432 15975453 -101887174 - AluSx SINE Alu -4 308 288 258 32 0 0 chr9 15975453 15975484 -101887143 + (TG)n Simple_repeat Simple_repeat 2 32 0 2167 140 0 0 chr9 15975484 15975770 -101886857 - AluSx SINE Alu -23 289 1 2430 161 85 5 chr9 15976669 15977092 -101885535 - MSTB2 LTR MaLR 0 457 1 375 371 8 0 chr9 15977501 15977625 -101885002 - MIR3 SINE MIR -54 154 30 22 0 0 0 chr9 15977802 15977824 -101884803 + AT_rich Low_complexity Low_complexity 1 22 0 1341 158 12 12 chr9 15977850 15978091 -101884536 - L1MA9 LINE L1 -5 6307 6067 629 290 58 37 chr9 15978112 15978491 -101884136 + L1ME4a LINE L1 5560 5946 -175 27 81 0 0 chr9 15978536 15978598 -101884029 + AT_rich Low_complexity Low_complexity 1 62 0 849 119 76 0 chr9 15978599 15978717 -101883910 - FLAM_C SINE Alu -16 127 1 420 270 113 0 chr9 15979197 15979312 -101883315 + L2 LINE L2 3145 3272 0 238 139 0 0 chr9 15979386 15979422 -101883205 - L2 LINE L2 -10 3303 3268 1903 139 24 7 chr9 15980310 15980598 -101882029 - AluSx SINE Alu -17 295 3 198 0 0 0 chr9 15981293 15981315 -101881312 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 1964 166 0 0 chr9 15981341 15981642 -101880985 - AluJo SINE Alu -11 301 1 865 148 7 22 chr9 15982062 15982197 -101880430 + FLAM_C SINE Alu 1 133 0 730 268 53 14 chr9 15982306 15982515 -101880112 + MIR SINE MIR 1 217 -45 4813 138 47 12 chr9 15982521 15983403 -101879224 + L1MA7 LINE L1 5378 6290 -1 287 169 28 162 chr9 15983781 15983923 -101878704 + HAL1 LINE L1 35 157 -2350 1665 173 45 43 chr9 15983967 15984028 -101878599 + MLT1C LTR MaLR 65 124 -343 2358 109 0 0 chr9 15984028 15984340 -101878287 + AluSx SINE Alu 1 312 0 1665 173 45 43 chr9 15984340 15984677 -101877950 + MLT1C LTR MaLR 124 464 -3 409 247 120 50 chr9 15984699 15984999 -101877628 + HAL1 LINE L1 197 517 -1990 2198 129 0 0 chr9 15985051 15985346 -101877281 - AluSx SINE Alu -15 297 3 1748 174 159 29 chr9 15985352 15985806 -101876821 + MLT2B1 LTR ERVL 8 520 0 202 442 0 0 chr9 15985935 15986107 -101876520 + (CACCC)n Simple_repeat Simple_repeat 3 174 0 1746 238 92 65 chr9 15986119 15987174 -101875453 + HAL1 LINE L1 759 1842 -665 589 234 166 0 chr9 15987178 15987323 -101875304 - MER5A DNA MER1_type -10 179 11 2427 54 24 3 chr9 15988085 15988383 -101874244 + AluY SINE Alu 1 304 -7 736 334 26 13 chr9 15988484 15988786 -101873841 + L3 LINE CR1 591 896 -681 282 206 359 8 chr9 15988795 15988926 -101873701 + L3 LINE CR1 1242 1418 -159 2232 104 0 16 chr9 15989519 15989835 -101872792 + AluSx SINE Alu 1 311 -1 291 291 134 24 chr9 15990077 15990204 -101872423 - MIR SINE MIR -96 166 26 379 274 137 8 chr9 15991740 15991864 -101870763 - MIR3 SINE MIR -15 193 54 276 222 26 111 chr9 15991863 15991980 -101870647 + L2 LINE L2 3160 3266 -6 * 273 306 204 0 chr9 15992651 15992808 -101869819 + MER5A DNA MER1_type 1 189 0 346 217 7 7 chr9 15994388 15994540 -101868087 + (CA)n Simple_repeat Simple_repeat 1 152 0 322 316 22 0 chr9 15994552 15994688 -101867939 + (CA)n Simple_repeat Simple_repeat 1 139 0 274 327 9 9 chr9 15995338 15995448 -101867179 + GA-rich Low_complexity Low_complexity 3 112 0 407 247 64 78 chr9 15997051 15997347 -101865280 + L1M4 LINE L1 3718 4009 -2137 704 281 73 25 chr9 15997363 15997840 -101864787 + L1M4 LINE L1 4110 4609 -1537 270 152 40 20 chr9 15997850 15997949 -101864678 + (TA)n Simple_repeat Simple_repeat 2 102 0 304 225 38 38 chr9 15997953 15998033 -101864594 + L1MCa LINE L1 1995 2074 -4352 * 454 305 63 37 chr9 15998021 15998290 -101864337 + L1M4 LINE L1 4620 4895 -1251 2211 123 3 10 chr9 15998394 15998703 -101863924 + AluSx SINE Alu 1 307 -5 858 154 20 36 chr9 15998725 15998920 -101863707 - L1 LINE L1 -1544 4602 4411 7454 142 15 2 chr9 15998945 16000195 -101862432 + HSMAR2 DNA Mariner 36 1301 -1 1960 182 7 2 chr9 16000236 16000642 -101861985 + L1MA10 LINE L1 4629 5036 -1110 5246 158 37 19 chr9 16000747 16001003 -101861624 + L1MA10 LINE L1 5221 5471 -863 3237 90 16 5 chr9 16001003 16001449 -101861178 - MLT2A2 LTR ERVL -2 451 1 5246 158 37 19 chr9 16001449 16002130 -101860497 + L1MA10 LINE L1 5471 6183 -151 180 111 0 0 chr9 16002130 16002157 -101860470 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 5246 158 37 19 chr9 16002157 16002312 -101860315 + L1MA10 LINE L1 6183 6334 0 199 237 0 34 chr9 16003572 16003631 -101858996 - L2 LINE L2 -92 3221 3165 196 116 47 0 chr9 16005432 16005475 -101857152 - MIR SINE MIR -51 211 167 270 0 0 0 chr9 16005691 16005721 -101856906 + (A)n Simple_repeat Simple_repeat 1 30 0 185 318 38 38 chr9 16005780 16005912 -101856715 - L2 LINE L2 -464 2850 2719 296 279 0 0 chr9 16006351 16006419 -101856208 - L2 LINE L2 -248 3065 2998 327 327 36 0 chr9 16006720 16006830 -101855797 - MIR SINE MIR -62 146 33 258 344 42 11 chr9 16006857 16007046 -101855581 - L2 LINE L2 0 3313 3119 3091 169 20 2 chr9 16007546 16008139 -101854488 + L1MB2 LINE L1 5512 6115 -56 2308 65 4 0 chr9 16008369 16008648 -101853979 - AluY SINE Alu -31 280 1 22 35 0 0 chr9 16008662 16008691 -101853936 + AT_rich Low_complexity Low_complexity 1 29 0 1808 150 3 59 chr9 16009272 16009592 -101853035 + AluSx SINE Alu 1 302 -10 193 273 107 33 chr9 16011481 16011631 -101850996 - MIR SINE MIR -2 260 100 320 293 48 34 chr9 16011954 16012162 -101850465 + L1ME LINE L1 5475 5685 -436 405 197 0 0 chr9 16012352 16012418 -101850209 + AluJ/FLAM SINE Alu 19 84 -228 1932 157 0 0 chr9 16012538 16012824 -101849803 + AluSx SINE Alu 1 286 -26 309 103 44 0 chr9 16012824 16012892 -101849735 + (TA)n Simple_repeat Simple_repeat 1 71 0 25 65 0 0 chr9 16012913 16012959 -101849668 + AT_rich Low_complexity Low_complexity 1 46 0 21 104 0 0 chr9 16012987 16013064 -101849563 + AT_rich Low_complexity Low_complexity 1 77 0 1213 236 79 52 chr9 16013191 16013708 -101848919 - L1MC4 LINE L1 -4 8038 7508 2137 245 188 64 chr9 16013710 16013894 -101848733 - L1MC4a LINE L1 -696 7112 6952 1656 239 20 64 chr9 16013894 16014438 -101848189 + MLT2B1 LTR ERVL 1 520 0 2137 245 188 64 chr9 16014438 16015369 -101847258 - L1MC4a LINE L1 -856 6952 5739 1695 185 18 0 chr9 16015369 16015650 -101846977 - AluJb SINE Alu -24 288 3 2137 245 188 64 chr9 16015650 16016122 -101846505 - L1MC4a LINE L1 -2069 5739 5327 186 128 0 0 chr9 16016361 16016400 -101846227 + (A)n Simple_repeat Simple_repeat 1 39 0 409 281 37 22 chr9 16016787 16016922 -101845705 + MIR3 SINE MIR 12 148 -60 1092 71 7 0 chr9 16016931 16017072 -101845555 - AluSg/x SINE Alu -5 307 166 250 182 18 0 chr9 16017389 16017444 -101845183 - Charlie1b DNA MER1_type -1 522 467 247 222 116 61 chr9 16017678 16017876 -101844751 + L1ME LINE L1 5690 5898 -223 2260 128 0 0 chr9 16018384 16018696 -101843931 - AluSx SINE Alu 0 312 1 491 236 79 53 chr9 16019578 16019767 -101842860 + MIR SINE MIR 18 214 -48 312 298 123 35 chr9 16019900 16020071 -101842556 + MIR3 SINE MIR 16 201 -7 302 301 51 3 chr9 16020349 16020475 -101842152 + MIR SINE MIR 7 147 -61 622 217 18 24 chr9 16020686 16020852 -101841775 - L1ME3 LINE L1 -8 6154 5990 1275 183 0 3 chr9 16020879 16021107 -101841520 + MLT2B1 LTR ERVL 275 494 -26 801 211 143 4 chr9 16021107 16021373 -101841254 - L1ME3 LINE L1 -216 5954 5652 264 256 12 0 chr9 16021397 16021479 -101841148 - L1ME3 LINE L1 -479 5683 5601 259 299 140 19 chr9 16021582 16021621 -101841006 - L2 LINE L2 -11 3302 3269 3262 161 12 2 chr9 16021621 16022136 -101840491 + MLT2B1 LTR ERVL 1 520 0 259 299 140 19 chr9 16022136 16022203 -101840424 - L2 LINE L2 -44 3269 3183 223 366 20 10 chr9 16022352 16022453 -101840174 + MIR SINE MIR 25 126 -82 2051 134 0 0 chr9 16022693 16023000 -101839627 + AluSq SINE Alu 1 307 0 1697 190 10 10 chr9 16023155 16023466 -101839161 - AluJb SINE Alu -1 311 1 1516 205 51 0 chr9 16023495 16023851 -101838776 + Charlie1b DNA MER1_type 1 374 -149 25 0 0 0 chr9 16023956 16023981 -101838646 + GC_rich Low_complexity Low_complexity 1 25 0 200 296 0 42 chr9 16024240 16024311 -101838316 - L2 LINE L2 -1 3312 3245 861 214 86 19 chr9 16025107 16025317 -101837310 - MIR SINE MIR -1 261 38 705 236 129 18 chr9 16025488 16025713 -101836914 + MIR SINE MIR 13 262 0 1190 214 0 16 chr9 16026203 16026446 -101836181 + MER8 DNA MER2_type 1 239 0 858 195 32 41 chr9 16026670 16026891 -101835736 - MER20 DNA MER1_type 0 219 1 1326 160 82 57 chr9 16027966 16028247 -101834380 + AluJo SINE Alu 1 288 -24 1945 152 7 0 chr9 16028254 16028543 -101834084 + AluSx SINE Alu 1 291 -21 30 0 0 0 chr9 16028545 16028575 -101834052 + AT_rich Low_complexity Low_complexity 1 30 0 1591 45 10 0 chr9 16028811 16029011 -101833616 + L1PA4 LINE L1 5954 6155 0 305 296 88 60 chr9 16029105 16029321 -101833306 + L1MC4a LINE L1 5752 5973 -1835 378 206 274 0 chr9 16030548 16030650 -101831977 + L2 LINE L2 3168 3297 -16 21 57 0 0 chr9 16031081 16031116 -101831511 + AT_rich Low_complexity Low_complexity 1 35 0 362 281 163 0 chr9 16031407 16031567 -101831060 + L1ME LINE L1 5608 5793 -328 407 264 132 0 chr9 16031824 16031968 -101830659 + Charlie1 DNA MER1_type 1434 1596 -1165 441 235 0 0 chr9 16031968 16032053 -101830574 + FLAM_A SINE Alu 39 123 -19 1318 192 197 22 chr9 16032086 16032633 -101829994 + Charlie1 DNA MER1_type 1624 2266 -495 3601 56 0 0 chr9 16033069 16033516 -101829111 - L1PA6 LINE L1 0 6154 5708 253 247 22 45 chr9 16033566 16033655 -101828972 + MIR SINE MIR 76 162 -100 21 36 0 0 chr9 16034048 16034076 -101828551 + AT_rich Low_complexity Low_complexity 1 28 0 2188 98 0 0 chr9 16034076 16034350 -101828277 + AluSq SINE Alu 1 274 -39 1880 114 46 0 chr9 16034373 16034635 -101827992 - AluSx SINE Alu -8 304 31 350 272 39 19 chr9 16036712 16036815 -101825812 - MIR SINE MIR -71 191 87 271 321 30 30 chr9 16037335 16037466 -101825161 - L1ME LINE L1 -376 5745 5615 240 143 0 0 chr9 16037469 16037511 -101825116 + (TG)n Simple_repeat Simple_repeat 1 42 0 343 208 141 10 chr9 16037542 16037725 -101824902 - L1M2 LINE L1 -798 5493 5293 336 324 50 27 chr9 16037804 16038066 -101824561 - L1ME LINE L1 -990 5156 4889 486 292 133 22 chr9 16039160 16039386 -101823241 + MIR SINE MIR 12 262 0 279 189 54 14 chr9 16040065 16040139 -101822488 + Charlie5 DNA MER1_type 36 112 -2500 1276 150 158 47 chr9 16040165 16040418 -101822209 - AluJo SINE Alu -30 282 2 340 132 143 0 chr9 16040477 16040568 -101822059 + Charlie5 DNA MER1_type 2416 2519 -93 221 222 159 79 chr9 16041176 16041302 -101821325 - MIR SINE MIR -14 248 113 2100 116 20 0 chr9 16041332 16041625 -101821002 - AluSq SINE Alu -14 299 1 297 203 101 13 chr9 16042121 16042200 -101820427 + MER117 DNA MER1_type 5 90 -107 1674 148 63 25 chr9 16042615 16042899 -101819728 - AluJb SINE Alu -17 295 1 936 174 34 6 chr9 16043524 16043702 -101818925 + MER2 DNA MER2_type 28 210 -135 568 196 220 0 chr9 16043810 16043983 -101818644 - MER58C DNA MER1_type -4 211 1 2064 108 7 0 chr9 16044065 16044369 -101818258 + AluSc SINE Alu 1 306 0 189 312 151 0 chr9 16045390 16045483 -101817144 + MIR SINE MIR 34 140 -122 231 351 0 26 chr9 16045501 16045611 -101817016 - MIR SINE MIR -109 153 47 396 299 185 0 chr9 16045611 16045768 -101816859 - MER5A DNA MER1_type 0 189 4 571 200 97 40 chr9 16045777 16045952 -101816675 - MER5A DNA MER1_type 0 189 5 203 228 54 54 chr9 16046139 16046231 -101816396 + MIR SINE MIR 170 261 -1 2171 116 3 0 chr9 16047648 16047942 -101814685 + AluSq SINE Alu 1 295 -18 184 245 57 0 chr9 16048023 16048076 -101814551 - MIR3 SINE MIR -15 193 138 22 0 0 0 chr9 16048820 16048842 -101813785 + AT_rich Low_complexity Low_complexity 1 22 0 1823 256 185 74 chr9 16049812 16049878 -101812749 + L2 LINE L2 635 692 -2622 1912 157 27 0 chr9 16049878 16050172 -101812455 + AluJb SINE Alu 11 312 0 1823 256 185 74 chr9 16050172 16050183 -101812444 + L2 LINE L2 692 700 -2614 252 0 0 0 chr9 16050183 16050211 -101812416 + (TA)n Simple_repeat Simple_repeat 1 28 0 1823 256 185 74 chr9 16050211 16051347 -101811280 + L2 LINE L2 700 2066 -1248 1562 168 14 31 chr9 16051347 16051639 -101810988 - AluJo SINE Alu -21 291 5 1823 256 185 74 chr9 16051639 16051999 -101810628 + L2 LINE L2 2066 2385 -929 7063 25 7 0 chr9 16051999 16052828 -101809799 - L1PA4 LINE L1 -2 6153 5319 1086 246 28 7 chr9 16052830 16053118 -101809509 + L2 LINE L2 2393 2686 -628 34067 77 3 7 chr9 16053118 16058625 -101804002 + L1PA6 LINE L1 666 6146 -8 966 167 33 0 chr9 16058625 16058805 -101803822 + Tigger1 DNA MER2_type 2232 2417 -1 1994 158 3 0 chr9 16058913 16059216 -101803411 + AluSx SINE Alu 1 304 -8 218 32 32 0 chr9 16059559 16059590 -101803037 + (TTA)n Simple_repeat Simple_repeat 1 32 0 2183 88 28 3 chr9 16059592 16059877 -101802750 - AluY SINE Alu -19 292 1 1975 190 55 39 chr9 16060033 16060522 -101802105 + MLT1D LTR MaLR 7 503 -2 734 231 172 13 chr9 16060529 16060767 -101801860 + MLT1G LTR MaLR 10 285 -305 198 156 0 0 chr9 16060780 16060825 -101801802 + GA-rich Low_complexity Low_complexity 2 46 0 880 149 25 65 chr9 16060907 16061108 -101801519 + L1MA2 LINE L1 6101 6293 -11 432 262 87 29 chr9 16061135 16061307 -101801320 + MLT1G LTR MaLR 379 560 -7 24 0 0 0 chr9 16062520 16062544 -101800083 + AT_rich Low_complexity Low_complexity 1 24 0 29 70 0 0 chr9 16063379 16063436 -101799191 + AT_rich Low_complexity Low_complexity 1 57 0 739 269 52 24 chr9 16064024 16064273 -101798354 + MIR SINE MIR 4 259 -3 386 359 70 0 chr9 16064274 16064430 -101798197 - MIR3 SINE MIR -10 198 32 21459 35 1 0 chr9 16064453 16067862 -101794765 + L1PA4 LINE L1 2737 6155 0 823 133 0 44 chr9 16068325 16068460 -101794167 - FLAM_C SINE Alu -4 129 1 283 288 44 12 chr9 16069414 16069574 -101793053 + L1MC4a LINE L1 5666 5830 -1978 180 0 0 0 chr9 16069628 16069648 -101792979 + (TA)n Simple_repeat Simple_repeat 2 21 0 285 236 45 45 chr9 16069727 16069837 -101792790 + L1MC4a LINE L1 6067 6176 -1632 1036 184 0 31 chr9 16069986 16070182 -101792445 + AluJo SINE Alu 1 190 -122 708 191 93 131 chr9 16070397 16070764 -101791863 + L1MC5 LINE L1 6650 7002 -959 560 188 8 16 chr9 16070944 16071072 -101791555 + L1ME1 LINE L1 6033 6159 -7 1710 244 136 31 chr9 16071095 16071663 -101790964 + L2 LINE L2 1713 2357 -957 1916 210 38 46 chr9 16071663 16072101 -101790526 + MLT1D LTR MaLR 5 440 -65 2362 93 0 3 chr9 16072101 16072413 -101790214 - AluY SINE Alu 0 311 1 1916 210 38 46 chr9 16072413 16072478 -101790149 + MLT1D LTR MaLR 440 504 -1 1710 244 136 31 chr9 16072478 16072547 -101790080 + L2 LINE L2 2357 2417 -897 308 315 108 0 chr9 16072563 16072674 -101789953 + L2 LINE L2 3191 3313 0 2235 131 0 0 chr9 16072909 16073221 -101789406 - AluSx SINE Alu 0 312 1 892 181 34 0 chr9 16073329 16073506 -101789121 - Tigger1 DNA MER2_type -1 2417 2235 5342 64 4 3 chr9 16073506 16074205 -101788422 - L1PA6 LINE L1 -5 6149 5450 384 264 122 0 chr9 16074482 16074679 -101787948 - MER112 DNA MER1_type 0 260 40 981 241 38 13 chr9 16075124 16075360 -101787267 + MIR SINE MIR 9 250 -12 1272 157 90 4 chr9 16075425 16075680 -101786947 - L1M4 LINE L1 -985 5161 4885 1670 109 0 38 chr9 16076179 16076418 -101786209 - AluSg/x SINE Alu -5 307 78 927 161 12 48 chr9 16077301 16077469 -101785158 + FRAM SINE Alu 1 160 -16 1850 91 9 3 chr9 16077836 16078274 -101784353 - L1P LINE L1 -744 5410 4418 5464 90 1 13 chr9 16078274 16078708 -101783919 + L1PA7 LINE L1 5395 5820 -334 2286 78 3 7 chr9 16078708 16079004 -101783623 + AluSc SINE Alu 1 295 -14 5464 90 1 13 chr9 16079004 16079336 -101783291 + L1PA7 LINE L1 5820 6154 0 211 305 146 12 chr9 16079578 16079660 -101782967 + MIR3 SINE MIR 14 106 -102 23 0 0 0 chr9 16080203 16080226 -101782401 + AT_rich Low_complexity Low_complexity 1 23 0 2030 132 3 0 chr9 16080417 16080704 -101781923 + AluSx SINE Alu 1 288 -24 21 0 0 0 chr9 16080711 16080732 -101781895 + AT_rich Low_complexity Low_complexity 1 21 0 1028 133 0 0 chr9 16080740 16080883 -101781744 + AluSg/x SINE Alu 126 268 -44 725 130 0 8 chr9 16080887 16081018 -101781609 + (GGAA)n Simple_repeat Simple_repeat 2 131 0 560 223 122 101 chr9 16081931 16082357 -101780270 + LTR37B LTR ERV1 1 435 -33 838 281 62 9 chr9 16082379 16082699 -101779928 + L1MC/D LINE L1 5328 5664 -2144 939 223 47 0 chr9 16082817 16083010 -101779617 - MER58A DNA MER1_type -22 202 1 21 57 0 0 chr9 16083141 16083176 -101779451 + AT_rich Low_complexity Low_complexity 1 35 0 225 298 35 0 chr9 16083507 16083564 -101779063 + AluS SINE Alu 2 60 -243 180 111 0 0 chr9 16083675 16083702 -101778925 + (A)n Simple_repeat Simple_repeat 1 27 0 1998 135 3 0 chr9 16083814 16084103 -101778524 - AluSg SINE Alu -20 290 1 1876 176 68 47 chr9 16084109 16084155 -101778472 - L1MB7 LINE L1 -2 6168 6124 2046 142 3 3 chr9 16084155 16084451 -101778176 - AluSx SINE Alu -16 296 1 1876 176 68 47 chr9 16084451 16084902 -101777725 - L1MB7 LINE L1 -46 6124 5625 377 285 135 5 chr9 16085124 16085331 -101777296 - L1M4 LINE L1 -1488 4658 4425 547 283 102 20 chr9 16085351 16085659 -101776968 - L2 LINE L2 -272 3041 2709 326 171 129 14 chr9 16086348 16086418 -101776209 + LTR33A LTR ERVL 444 521 -2 1837 113 102 4 chr9 16086918 16087192 -101775435 + AluSq SINE Alu 1 301 -12 22 0 0 0 chr9 16089135 16089157 -101773470 + AT_rich Low_complexity Low_complexity 1 22 0 763 268 0 25 chr9 16089536 16089812 -101772815 - L1P LINE L1 -1936 4210 3942 18603 90 5 6 chr9 16089820 16092429 -101770198 + L1P LINE L1 2762 5367 -779 1158 52 0 0 chr9 16092429 16092563 -101770064 + AluYa5 SINE Alu 1 134 -177 1192 249 7 20 chr9 16093773 16094066 -101768561 + AluSx SINE Alu 1 289 -13 5985 179 28 63 chr9 16094073 16094266 -101768361 + L1M3 LINE L1 3994 4192 -1976 2329 105 0 0 chr9 16094266 16094570 -101768057 + AluSg SINE Alu 4 307 -3 5985 179 28 63 chr9 16094570 16095748 -101766879 + L1M3 LINE L1 4192 5324 -844 1750 195 0 0 chr9 16095748 16096040 -101766587 + AluJb SINE Alu 1 292 -20 5985 179 28 63 chr9 16096040 16096217 -101766410 + L1M3 LINE L1 5324 5506 -662 2357 124 58 0 chr9 16096217 16096563 -101766064 + MSTC LTR MaLR 1 366 -62 305 170 0 0 chr9 16096562 16096615 -101766012 + Alu SINE Alu 250 302 0 * 241 327 33 65 chr9 16097693 16097846 -101764781 + MIR3 SINE MIR 57 204 -4 22 35 0 0 chr9 16098981 16099010 -101763617 + AT_rich Low_complexity Low_complexity 1 29 0 508 155 103 10 chr9 16099173 16099270 -101763357 - U6 snRNA snRNA -1 106 1 662 293 150 34 chr9 16101315 16101816 -101760811 - L1ME4a LINE L1 -70 6051 5493 228 361 92 8 chr9 16102011 16102130 -101760497 + L2 LINE L2 3139 3267 -5 337 174 139 76 chr9 16102320 16102464 -101760163 + MER112 DNA MER1_type 7 159 -101 192 211 39 19 chr9 16103558 16103610 -101759017 - MIR SINE MIR -112 150 98 515 207 27 9 chr9 16103627 16103738 -101758889 + MLT1J LTR MaLR 17 129 -382 1876 181 11 43 chr9 16103773 16104148 -101758479 - MLT1A2 LTR MaLR -11 363 1 484 336 179 6 chr9 16104148 16104466 -101758161 + MLT1J LTR MaLR 139 511 0 254 337 10 20 chr9 16104466 16104564 -101758063 - MIR SINE MIR -164 98 2 564 155 43 15 chr9 16105314 16105448 -101757179 - L1MC4 LINE L1 -2 8039 7668 1809 203 31 50 chr9 16105515 16105997 -101756630 - L1MC4 LINE L1 -125 7917 7445 1822 141 46 0 chr9 16106443 16106726 -101755901 - AluJb SINE Alu -16 296 1 25 0 0 0 chr9 16107193 16107218 -101755409 + AT_rich Low_complexity Low_complexity 1 25 0 195 285 135 75 chr9 16108139 16108458 -101754169 + L3b LINE CR1 1133 1470 -113 2080 137 13 0 chr9 16108475 16108781 -101753846 + AluSx SINE Alu 1 310 -2 1786 235 73 7 chr9 16109160 16109582 -101753045 - LTR40c LTR ERVL -12 453 4 2179 107 0 7 chr9 16109918 16110209 -101752418 - AluJo SINE Alu -23 289 1 267 245 157 14 chr9 16111170 16111317 -101751310 + L2 LINE L2 2332 2499 -815 734 260 140 1 chr9 16112164 16112408 -101750219 + L1M4 LINE L1 4703 4989 -1157 979 130 19 0 chr9 16112479 16112633 -101749994 + LTR54B LTR ERV1 1 157 -341 805 250 0 0 chr9 16112635 16112799 -101749828 + FRAM SINE Alu 2 165 -11 1468 177 53 3 chr9 16112799 16113098 -101749529 + LTR54B LTR ERV1 185 498 0 21 36 0 0 chr9 16113103 16113131 -101749496 + AT_rich Low_complexity Low_complexity 1 28 0 386 188 38 0 chr9 16113151 16113231 -101749396 + L1ME1 LINE L1 5740 5822 -344 735 186 16 0 chr9 16113241 16113365 -101749262 + FLAM_C SINE Alu 2 127 -6 1443 188 19 50 chr9 16113379 16113657 -101748970 + AluJo SINE Alu 1 269 -43 1854 131 163 27 chr9 16113657 16113956 -101748671 + MSTA LTR MaLR 3 365 -63 2359 106 0 0 chr9 16113956 16114259 -101748368 - AluSx SINE Alu -9 303 1 1854 131 163 27 chr9 16114259 16114334 -101748293 + MSTA LTR MaLR 365 428 0 1443 188 19 50 chr9 16114334 16114374 -101748253 + AluJo SINE Alu 269 309 -3 317 94 38 0 chr9 16114375 16114428 -101748199 + GA-rich Low_complexity Low_complexity 4 58 0 316 136 0 25 chr9 16114432 16114513 -101748114 + (CTG)n Simple_repeat Simple_repeat 2 80 0 1146 122 0 0 chr9 16114527 16114707 -101747920 + (TCC)n Simple_repeat Simple_repeat 1 180 0 379 141 13 39 chr9 16114836 16114914 -101747713 - L1MC1 LINE L1 -235 6098 6023 1751 164 7 27 chr9 16115079 16115378 -101747249 + AluJo SINE Alu 1 293 -19 681 281 134 9 chr9 16116203 16116434 -101746193 + MIR SINE MIR 3 262 0 375 320 28 11 chr9 16117600 16117781 -101744846 + MARNA DNA Mariner 389 572 -14 784 264 25 36 chr9 16118156 16118433 -101744194 + L2 LINE L2 2191 2464 -850 570 234 144 0 chr9 16118436 16118603 -101744024 + L2 LINE L2 2605 2795 -519 2279 212 25 39 chr9 16118642 16118882 -101743745 + LTR40a LTR ERVL 7 249 -270 2075 125 0 7 chr9 16118882 16119185 -101743442 + AluSg SINE Alu 1 301 -9 2279 212 25 39 chr9 16119185 16119463 -101743164 + LTR40a LTR ERVL 249 518 -1 739 264 36 48 chr9 16119464 16119797 -101742830 + L2 LINE L2 2826 3154 -159 888 233 82 0 chr9 16119799 16120005 -101742622 - MER58A DNA MER1_type -1 223 1 1333 89 0 0 chr9 16120117 16120285 -101742342 + AluSg/x SINE Alu 145 312 0 807 246 41 9 chr9 16120363 16120583 -101742044 + L1ME1 LINE L1 5935 6161 -5 690 281 104 5 chr9 16120597 16120818 -101741809 + MLT1I LTR MaLR 167 409 0 1677 168 106 38 chr9 16121372 16121741 -101740886 - MSTD LTR MaLR 0 396 3 2072 139 0 0 chr9 16121872 16122166 -101740461 - AluSx SINE Alu -18 294 1 2169 177 14 8 chr9 16122543 16122904 -101739723 + MLT1A1 LTR MaLR 3 365 0 368 185 31 154 chr9 16123132 16123239 -101739388 + L1ME LINE L1 5610 5684 -437 1565 174 21 7 chr9 16123239 16123520 -101739107 + AluJb SINE Alu 1 285 -27 368 185 31 154 chr9 16123520 16123607 -101739020 + L1ME LINE L1 5684 5780 -341 278 155 17 0 chr9 16123615 16123673 -101738954 - L1MD3 LINE L1 -10 7985 7927 2179 122 3 7 chr9 16123676 16123979 -101738648 + AluSx SINE Alu 1 302 -10 1536 234 92 34 chr9 16124004 16124452 -101738175 - MLT1E2 LTR MaLR 0 626 153 2090 125 0 37 chr9 16125609 16125930 -101736697 - AluSx SINE Alu -1 311 3 2135 127 0 3 chr9 16126045 16126344 -101736283 + AluSg SINE Alu 1 298 -12 200 250 45 0 chr9 16126621 16126665 -101735962 + L2 LINE L2 3219 3264 -8 1215 67 11 11 chr9 16127311 16127491 -101735136 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 454 157 13 7 chr9 16127491 16127637 -101734990 + GA-rich Low_complexity Low_complexity 1 146 0 234 206 81 169 chr9 16128477 16128637 -101733990 - MER5A DNA MER1_type 0 189 33 508 261 97 32 chr9 16129000 16129389 -101733238 + MLT1K LTR MaLR 99 588 0 270 261 22 22 chr9 16129435 16129527 -101733100 - L2 LINE L2 -673 2641 2550 2036 135 0 28 chr9 16129617 16129936 -101732691 + AluSx SINE Alu 1 310 -2 2361 82 3 0 chr9 16130061 16130355 -101732272 + AluSc SINE Alu 5 299 -10 458 199 19 2 chr9 16131189 16131310 -101731317 - L1M LINE L1 -795 5379 5254 22 70 0 0 chr9 16131465 16131508 -101731119 + AT_rich Low_complexity Low_complexity 1 43 0 1312 256 19 19 chr9 16131659 16132078 -101730549 + L1PBb LINE L1 480 989 -5214 1530 179 10 10 chr9 16132091 16132403 -101730224 + L1PBb LINE L1 1042 1353 -4850 1714 169 23 19 chr9 16132664 16132972 -101729655 - HUERS-P3 LTR ERV1 -8382 537 229 10042 26 0 197 chr9 16133038 16134787 -101727840 + SVA Other Other 1 1412 0 6555 183 9 46 chr9 16134787 16136747 -101725880 + L1PBb LINE L1 1333 3222 -2981 2161 137 0 0 chr9 16136747 16137047 -101725580 + AluSx SINE Alu 1 300 -12 6555 183 9 46 chr9 16137047 16137425 -101725202 + L1PBb LINE L1 3222 3612 -2591 1100 177 0 30 chr9 16138219 16138417 -101724210 - AluSg/x SINE Alu -20 290 99 1782 184 3 0 chr9 16138986 16139280 -101723347 - AluJo SINE Alu -17 295 1 484 297 188 25 chr9 16140059 16140622 -101722005 + L1MC4a LINE L1 5282 5936 -1872 1027 159 0 33 chr9 16141851 16142033 -101720594 - FRAM SINE Alu -3 173 1 694 199 60 7 chr9 16142252 16142403 -101720224 - L1PB4 LINE L1 -7 6149 5991 2979 160 21 0 chr9 16143130 16143600 -101719027 + ERVL LTR ERVL 3697 4176 -1588 272 214 18 0 chr9 16145025 16145081 -101717546 + L1MC5 LINE L1 7311 7367 -594 1628 257 20 20 chr9 16145274 16145718 -101716909 + L1MC4a LINE L1 7365 7808 0 16387 126 21 7 chr9 16146057 16146909 -101715718 + Tigger1 DNA MER2_type 2 840 -1578 2333 102 0 3 chr9 16146909 16147214 -101715413 + AluSg SINE Alu 1 304 -6 16387 126 21 7 chr9 16147214 16148744 -101713883 + Tigger1 DNA MER2_type 840 2418 0 317 264 25 74 chr9 16148985 16149106 -101713521 + L1ME LINE L1 308 422 -5950 274 213 25 25 chr9 16149116 16149196 -101713431 + L1ME LINE L1 1262 1341 -5043 * 1165 250 147 42 chr9 16149194 16149697 -101712930 + L1ME LINE L1 1559 2008 -4555 2090 119 0 3 chr9 16149697 16149982 -101712645 + AluSg SINE Alu 1 284 -26 234 0 0 0 chr9 16149982 16150008 -101712619 + (TA)n Simple_repeat Simple_repeat 2 27 0 1165 250 147 42 chr9 16150008 16150258 -101712369 + L1ME LINE L1 2007 2392 -4171 1273 224 67 14 chr9 16150322 16150693 -101711934 + L1ME LINE L1 2471 2861 -3521 304 93 0 23 chr9 16150705 16150748 -101711879 - MER3 DNA MER1_type -167 42 1 2741 42 0 0 chr9 16150974 16151285 -101711342 + AluY SINE Alu 1 311 0 214 313 61 10 chr9 16152013 16152112 -101710515 + MIR3 SINE MIR 102 205 -3 2378 94 0 0 chr9 16152240 16152549 -101710078 + AluSc SINE Alu 1 309 0 2143 112 0 0 chr9 16153951 16154228 -101708399 + AluSx SINE Alu 1 277 -35 1000 127 0 0 chr9 16154897 16155039 -101707588 + AluSp/q SINE Alu 156 297 -16 1204 152 8 99 chr9 16155313 16155528 -101707099 + MER2 DNA MER2_type 1 189 -156 2107 130 3 0 chr9 16155528 16155827 -101706800 - AluSx SINE Alu -12 300 1 1204 152 8 99 chr9 16155827 16155874 -101706753 + MER2 DNA MER2_type 189 239 -106 5267 135 40 128 chr9 16155910 16157239 -101705388 - pTR5 LTR ERV1 0 2438 1352 2030 95 3 14 chr9 16157249 16157533 -101705094 + AluSp SINE Alu 31 311 -2 504 162 121 10 chr9 16157538 16157637 -101704990 + MER2 DNA MER2_type 235 344 -1 2321 70 3 0 chr9 16157768 16158066 -101704561 - L1PA8 LINE L1 -77 6095 5797 1299 88 0 52 chr9 16158166 16158358 -101704269 - AluSq SINE Alu -131 182 1 2442 86 0 0 chr9 16159044 16159345 -101703282 + AluSp SINE Alu 1 301 -12 260 287 201 10 chr9 16159793 16160010 -101702617 + MIR SINE MIR 2 257 -5 907 178 0 38 chr9 16161542 16161632 -101700995 - AluJb SINE Alu -9 303 222 2327 128 21 39 chr9 16161632 16162014 -101700613 + THE1C LTR MaLR 1 375 0 907 178 0 38 chr9 16162014 16162108 -101700519 - AluJb SINE Alu -90 222 126 2498 73 3 0 chr9 16162501 16162802 -101699825 + AluY SINE Alu 1 302 -9 1352 74 6 6 chr9 16162920 16163095 -101699532 + AluSq SINE Alu 122 296 -17 592 299 50 84 chr9 16163096 16163500 -101699127 - L2 LINE L2 -616 2698 2309 354 360 13 7 chr9 16164248 16164398 -101698229 - L1MEd LINE L1 -5471 648 498 1284 179 13 0 chr9 16164425 16164660 -101697967 + L1MB7 LINE L1 5591 5828 -356 354 182 0 0 chr9 16164661 16164716 -101697911 + Tigger5 DNA MER2_type 1 55 -2268 * 519 175 48 0 chr9 16164708 16164811 -101697816 + Tigger5 DNA MER2_type 2215 2322 -1 800 231 40 59 chr9 16164840 16165143 -101697484 + L1MB7 LINE L1 5888 6184 0 229 242 161 0 chr9 16165307 16165369 -101697258 + HsTC2 DNA Tc2 1820 1891 -7 318 51 0 0 chr9 16165761 16165800 -101696827 - U2 snRNA snRNA -149 39 1 1838 159 20 0 chr9 16166218 16166514 -101696113 + AluJo SINE Alu 1 302 -10 29 0 0 25 chr9 16167088 16167109 -101695518 + AT_rich Low_complexity Low_complexity 1 22 -17 2312 116 0 0 chr9 16167109 16167420 -101695207 - AluSx SINE Alu -1 311 1 29 0 0 25 chr9 16167420 16167438 -101695189 + AT_rich Low_complexity Low_complexity 22 39 0 216 67 0 0 chr9 16167541 16167571 -101695056 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 844 186 27 22 chr9 16168083 16168266 -101694361 + MLT2B1 LTR ERVL 337 520 0 316 224 318 29 chr9 16168283 16168453 -101694174 - MIR SINE MIR -7 255 37 529 212 19 112 chr9 16169248 16169391 -101693236 + L1MA9 LINE L1 6039 6147 -165 2371 96 0 10 chr9 16169391 16169694 -101692933 + AluSx SINE Alu 1 300 -12 529 212 19 112 chr9 16169694 16169819 -101692808 + L1MA9 LINE L1 6147 6282 -30 3415 163 15 15 chr9 16170636 16171251 -101691376 + L1MC3 LINE L1 7162 7776 -9 26 0 0 0 chr9 16171487 16171513 -101691114 + AT_rich Low_complexity Low_complexity 1 26 0 1369 245 8 45 chr9 16171683 16171819 -101690808 + MLT1A2 LTR MaLR 33 172 -202 2303 65 3 3 chr9 16171819 16172109 -101690518 + AluY SINE Alu 1 290 -21 1369 245 8 45 chr9 16172109 16172327 -101690300 + MLT1A2 LTR MaLR 172 374 0 307 296 117 19 chr9 16172327 16172644 -101689983 + L1ME4a LINE L1 5567 5914 -207 319 281 8 0 chr9 16173501 16173629 -101688998 + (CA)n Simple_repeat Simple_repeat 2 130 0 623 302 116 32 chr9 16173709 16174322 -101688305 + L2 LINE L2 2545 3205 -108 216 0 0 0 chr9 16174386 16174410 -101688217 + (TGAA)n Simple_repeat Simple_repeat 3 26 0 2294 102 0 10 chr9 16174593 16174906 -101687721 + AluSg SINE Alu 1 310 0 2162 130 0 3 chr9 16174908 16175208 -101687419 + AluSx SINE Alu 1 299 -13 183 80 0 0 chr9 16175629 16175654 -101686973 + (A)n Simple_repeat Simple_repeat 1 25 0 552 142 117 92 chr9 16175664 16175784 -101686843 + FLAM_A SINE Alu 10 132 -10 270 263 33 72 chr9 16175928 16176080 -101686547 - MIR SINE MIR -3 259 114 1590 210 41 34 chr9 16176189 16176393 -101686234 + LTR37B LTR ERV1 51 252 -216 2340 130 15 21 chr9 16176393 16176732 -101685895 - MER1B DNA MER1_type 0 337 1 1590 210 41 34 chr9 16176732 16176941 -101685686 + LTR37B LTR ERV1 252 467 -1 205 171 0 57 chr9 16178473 16178543 -101684084 + CT-rich Low_complexity Low_complexity 1 66 0 2325 97 3 0 chr9 16180064 16180362 -101682265 - AluSp SINE Alu -14 299 1 213 299 140 0 chr9 16181385 16181492 -101681135 + MIR SINE MIR 122 243 -19 244 308 216 34 chr9 16181684 16181892 -101680735 + MIR SINE MIR 4 249 -13 2151 89 18 0 chr9 16182168 16182450 -101680177 + AluSp SINE Alu 1 287 -26 260 314 0 23 chr9 16182627 16182713 -101679914 + MIR3 SINE MIR 84 167 -41 22 35 0 0 chr9 16183650 16183679 -101678948 + AT_rich Low_complexity Low_complexity 1 29 0 538 236 61 24 chr9 16183864 16184029 -101678598 - MIR SINE MIR 0 262 92 316 301 62 14 chr9 16184015 16184161 -101678466 + MIR SINE MIR 97 249 -13 * 405 299 37 0 chr9 16184466 16184573 -101678054 + MIR SINE MIR 18 128 -134 734 198 21 109 chr9 16184833 16184905 -101677722 + MER58A DNA MER1_type 3 80 -2340 2347 108 0 6 chr9 16184905 16185219 -101677408 - AluSx SINE Alu 0 312 1 734 198 21 109 chr9 16185219 16185384 -101677243 + MER58A DNA MER1_type 80 219 -5 186 171 0 0 chr9 16186022 16186063 -101676564 + T-rich Low_complexity Low_complexity 1 41 0 183 42 0 0 chr9 16186200 16186224 -101676403 + (CAA)n Simple_repeat Simple_repeat 2 25 0 450 277 101 0 chr9 16186230 16186389 -101676238 + MIR SINE MIR 82 256 -6 225 0 0 0 chr9 16186647 16186672 -101675955 + (A)n Simple_repeat Simple_repeat 1 25 0 1935 140 7 7 chr9 16186700 16186992 -101675635 - AluSx SINE Alu -14 298 7 848 223 38 46 chr9 16187627 16187865 -101674762 - MIR SINE MIR 0 262 27 200 346 65 19 chr9 16188373 16188480 -101674147 - MIR SINE MIR -10 252 141 371 323 93 40 chr9 16188666 16188892 -101673735 + L1MB7 LINE L1 4758 4995 -1151 338 276 57 36 chr9 16189019 16189211 -101673416 + L1MB7 LINE L1 5199 5394 -752 353 316 155 20 chr9 16189223 16189527 -101673100 + L1MB7 LINE L1 5439 5783 -2025 25 83 0 0 chr9 16189826 16189886 -101672741 + AT_rich Low_complexity Low_complexity 1 60 0 2523 39 0 26 chr9 16189998 16190307 -101672320 + AluY SINE Alu 1 301 -10 279 136 7 0 chr9 16190359 16190417 -101672210 - L1MC4 LINE L1 0 8042 7936 953 116 22 0 chr9 16190426 16190564 -101672063 + L1MA3 LINE L1 6165 6305 0 2430 51 0 3 chr9 16190591 16190886 -101671741 + AluY SINE Alu 1 294 -17 2157 235 82 50 chr9 16191023 16191932 -101670695 - L1MC4 LINE L1 -141 7901 6963 1973 66 7 26 chr9 16192727 16192999 -101669628 + AluY SINE Alu 45 311 0 4235 150 94 9 chr9 16193205 16193959 -101668668 + LTR1B LTR ERV1 1 818 -8 213 210 258 0 chr9 16194108 16194170 -101668457 - MIR3 SINE MIR -45 163 86 432 200 35 26 chr9 16194466 16194581 -101668046 - MIR SINE MIR -83 179 64 25 0 0 0 chr9 16195117 16195142 -101667485 + AT_rich Low_complexity Low_complexity 1 25 0 507 184 1 13 chr9 16195171 16195279 -101667348 + L1MB7 LINE L1 6018 6125 -55 1358 184 100 139 chr9 16195284 16195967 -101666660 + MER4A LTR ERV1 5 660 -4 2595 122 5 19 chr9 16196193 16196562 -101666065 + THE1B LTR MaLR 1 364 0 426 236 50 28 chr9 16196851 16197004 -101665623 + MIR SINE MIR 20 177 -63 6712 124 88 9 chr9 16197261 16198376 -101664251 + Tigger3b DNA MER2_type 28 1230 -1 400 204 86 95 chr9 16198523 16198686 -101663941 + MER5A DNA MER1_type 22 188 -1 2360 148 21 0 chr9 16198715 16199101 -101663526 + MER57A LTR ERV1 1 394 -9 321 242 242 20 chr9 16199874 16200023 -101662604 - MIR SINE MIR -49 213 32 832 185 74 42 chr9 16200198 16200387 -101662240 - MER58A DNA MER1_type -3 221 27 332 319 108 9 chr9 16200411 16200541 -101662086 + MIR3 SINE MIR 2 141 -95 196 333 113 27 chr9 16200707 16200857 -101661770 - MIR3 SINE MIR -32 176 14 2182 112 0 7 chr9 16201521 16201816 -101660811 - AluSq SINE Alu -20 293 1 869 188 0 107 chr9 16201842 16202039 -101660588 + AluJb SINE Alu 137 312 0 448 270 20 40 chr9 16202307 16202455 -101660172 - MIR3 SINE MIR -18 190 46 181 328 17 35 chr9 16202543 16202601 -101660026 + L2 LINE L2 3083 3139 -133 2756 184 6 24 chr9 16202885 16203369 -101659258 + MLT2B3 LTR ERVL 1 475 -79 2476 135 6 3 chr9 16203369 16203732 -101658895 - THE1B LTR MaLR 0 364 1 412 139 76 0 chr9 16203732 16203808 -101658819 + MLT2B2 LTR ERVL 421 502 -13 504 230 97 118 chr9 16203856 16204195 -101658432 + L2 LINE L2 2904 3235 -37 223 319 80 57 chr9 16205433 16205623 -101657004 + L2 LINE L2 2545 2746 -568 2339 92 3 19 chr9 16205623 16205939 -101656688 + AluSq SINE Alu 1 311 -2 223 319 80 57 chr9 16205939 16206062 -101656565 + L2 LINE L2 2746 2865 -449 388 245 53 0 chr9 16206217 16206311 -101656316 - MER94 DNA DNA -35 99 1 273 322 70 0 chr9 16206371 16206486 -101656141 + L2 LINE L2 3150 3272 0 2195 122 0 3 chr9 16206493 16206804 -101655823 + AluSx SINE Alu 1 310 -2 273 139 0 89 chr9 16206976 16207055 -101655572 - MER106B DNA MER1_type -154 905 834 2123 119 0 10 chr9 16207061 16207355 -101655272 + AluSx SINE Alu 1 291 -21 2132 95 3 10 chr9 16207355 16207660 -101654967 + AluSp SINE Alu 1 303 -10 485 241 38 15 chr9 16207681 16207814 -101654813 + MIR SINE MIR 119 254 -8 317 247 11 65 chr9 16207826 16207919 -101654708 - MIR3 SINE MIR -109 99 12 1098 172 0 0 chr9 16207959 16208122 -101654505 + FAM SINE Alu 1 163 -12 366 312 46 30 chr9 16208247 16208400 -101654227 + MIR SINE MIR 2 158 -58 2218 109 3 0 chr9 16208452 16208746 -101653881 + AluSx SINE Alu 1 295 -17 1130 101 0 0 chr9 16208759 16208928 -101653699 - AluSg/x SINE Alu 0 302 134 1809 202 74 40 chr9 16208931 16209377 -101653250 - MLT2B1 LTR ERVL -59 461 1 2612 221 118 20 chr9 16209378 16210130 -101652497 - L1MEc LINE L1 -5549 847 22 1112 199 118 103 chr9 16210140 16210589 -101652038 + MER34C LTR ERV1 35 495 -90 1729 167 33 3 chr9 16210589 16210889 -101651738 - AluJb SINE Alu -3 309 1 1112 199 118 103 chr9 16210889 16210982 -101651645 + MER34C LTR ERV1 495 585 0 2182 123 3 3 chr9 16211116 16211425 -101651202 - AluSx SINE Alu -1 311 3 317 43 21 0 chr9 16211624 16211671 -101650956 + (TG)n Simple_repeat Simple_repeat 2 49 0 2375 73 13 0 chr9 16211837 16212137 -101650490 - AluSp SINE Alu -9 304 1 1975 184 40 153 chr9 16212310 16213093 -101649534 - LTR8A LTR ERV1 0 727 34 700 159 18 0 chr9 16213105 16213218 -101649409 + FLAM_A SINE Alu 28 142 0 258 193 18 0 chr9 16213218 16213275 -101649352 - HAL1b LINE L1 -46 1302 1245 1555 162 50 46 chr9 16213487 16213541 -101649086 + MSTB LTR MaLR 3 55 -371 1981 116 0 44 chr9 16213541 16213860 -101648767 + AluSp SINE Alu 1 305 -8 1555 162 50 46 chr9 16213860 16214108 -101648519 + MSTB LTR MaLR 55 306 -120 1567 257 123 13 chr9 16214379 16214842 -101647785 + MLT1G1 LTR MaLR 73 586 -9 550 302 117 66 chr9 16214849 16215260 -101647367 + L3 LINE CR1 985 1416 -161 183 156 0 0 chr9 16215716 16215748 -101646879 + A-rich Low_complexity Low_complexity 1 32 0 305 274 39 10 chr9 16215852 16215954 -101646673 + MIR SINE MIR 81 185 -77 249 277 169 0 chr9 16216403 16216486 -101646141 + L2 LINE L2 3161 3257 -15 344 22 0 22 chr9 16216487 16216533 -101646094 + (TGAA)n Simple_repeat Simple_repeat 1 45 0 2257 102 0 0 chr9 16218800 16219093 -101643534 + AluSg SINE Alu 1 293 -17 387 196 7 105 chr9 16219135 16219185 -101643442 - L1ME4a LINE L1 -37 6084 6031 2072 89 7 0 chr9 16219185 16219454 -101643173 + AluSp SINE Alu 21 291 -22 387 196 7 105 chr9 16219454 16219556 -101643071 - L1ME4a LINE L1 -90 6031 5947 244 226 71 0 chr9 16219537 16219621 -101643006 - L1MC4 LINE L1 -1339 6703 6614 * 367 289 35 18 chr9 16219793 16219907 -101642720 - L2 LINE L2 -35 3237 3122 2255 92 0 3 chr9 16220251 16220544 -101642083 + AluY SINE Alu 1 292 -19 1023 172 42 9 chr9 16220544 16220759 -101641868 + L1MC3 LINE L1 7564 7785 0 2139 201 53 25 chr9 16220997 16221485 -101641142 + MLT1D LTR MaLR 1 502 -3 363 23 0 0 chr9 16222713 16222757 -101639870 + (CA)n Simple_repeat Simple_repeat 2 45 0 21 82 0 0 chr9 16223010 16223059 -101639568 + AT_rich Low_complexity Low_complexity 1 49 0 1757 139 45 137 chr9 16223893 16224295 -101638332 + MLT1A1 LTR MaLR 1 365 0 332 365 42 14 chr9 16224312 16224526 -101638101 - L2 LINE L2 0 3313 3094 392 287 67 26 chr9 16224679 16224874 -101637753 - L2 LINE L2 -424 2890 2688 363 207 189 24 chr9 16224876 16225045 -101637582 + L1MC5 LINE L1 7561 7757 -204 * 588 246 54 38 chr9 16225043 16225341 -101637286 + L1MC5 LINE L1 7692 7925 -36 1770 170 10 3 chr9 16225341 16225630 -101636997 - AluJb SINE Alu -20 292 2 2500 94 12 6 chr9 16225733 16226075 -101636552 - MER4E LTR ERV1 -435 344 1 537 126 0 32 chr9 16226385 16226480 -101636147 + L1PA13 LINE L1 6058 6149 -14 2562 123 27 57 chr9 16226499 16226730 -101635897 + MER4E LTR ERV1 28 264 -502 2130 88 50 0 chr9 16226730 16227013 -101635614 - AluSp SINE Alu -16 297 1 2562 123 27 57 chr9 16227013 16227333 -101635294 + MER4E LTR ERV1 264 741 -25 2213 117 0 0 chr9 16227437 16227735 -101634892 + AluSx SINE Alu 1 298 -14 761 197 31 105 chr9 16227735 16228029 -101634598 - LTR8 LTR ERV1 -174 517 246 1814 165 29 0 chr9 16228151 16228423 -101634204 - AluJo SINE Alu -32 280 1 247 262 8 57 chr9 16228556 16228678 -101633949 - L2 LINE L2 -76 3237 3122 528 329 116 18 chr9 16228797 16229186 -101633441 - L2 LINE L2 -338 2976 2550 198 0 0 0 chr9 16229194 16229216 -101633411 + (GGGAGA)n Simple_repeat Simple_repeat 1 22 0 991 210 42 38 chr9 16229264 16229526 -101633101 + L1MD2 LINE L1 3763 4025 -2121 782 188 182 11 chr9 16229529 16229710 -101632917 + AluSc SINE Alu 87 298 -11 3580 208 63 98 chr9 16229711 16229960 -101632667 + L1MD2 LINE L1 4018 4274 -2085 2349 80 3 6 chr9 16229960 16230271 -101632356 + AluY SINE Alu 1 310 -1 3580 208 63 98 chr9 16230271 16230448 -101632179 + L1MD2 LINE L1 4274 4456 -1903 2135 99 3 10 chr9 16230448 16230752 -101631875 + AluY SINE Alu 1 302 -9 3580 208 63 98 chr9 16230752 16231472 -101631155 + L1MD2 LINE L1 4456 5200 -1159 2033 118 11 0 chr9 16231472 16231779 -101630848 + AluSx SINE Alu 1 310 0 3580 208 63 98 chr9 16231779 16232654 -101629973 + L1MD2 LINE L1 5200 5947 -412 225 269 51 26 chr9 16233209 16233287 -101629340 - L2 LINE L2 -47 3225 3146 189 214 0 0 chr9 16233826 16233868 -101628759 + CT-rich Low_complexity Low_complexity 3 44 0 1650 160 0 35 chr9 16233870 16234158 -101628469 - AluJb SINE Alu -34 278 1 225 114 0 0 chr9 16234193 16234228 -101628399 + HSMAR1 DNA Mariner 1253 1287 0 782 316 35 52 chr9 16234464 16234945 -101627682 + MLT1K LTR MaLR 1 473 -3 310 205 168 0 chr9 16235324 16235409 -101627218 - MLT1I LTR MaLR -299 110 40 2278 114 0 3 chr9 16235520 16235828 -101626799 + AluSg SINE Alu 1 307 -3 278 303 206 12 chr9 16235852 16236017 -101626610 - MIR SINE MIR -10 252 56 238 328 63 16 chr9 16236286 16236475 -101626152 - L2 LINE L2 -975 2339 2142 2069 82 0 11 chr9 16236636 16236906 -101625721 - AluSx SINE Alu -7 305 39 211 338 81 0 chr9 16237319 16237393 -101625234 + L2 LINE L2 3020 3099 -173 237 284 80 0 chr9 16237871 16237959 -101624668 + L1ME LINE L1 5520 5614 -507 375 244 74 30 chr9 16237962 16238097 -101624530 - MLT1J LTR MaLR 0 511 371 679 278 85 14 chr9 16238193 16238405 -101624222 - MLT1J LTR MaLR -272 239 13 23 0 0 29 chr9 16238477 16238489 -101624138 + AT_rich Low_complexity Low_complexity 1 12 -21 2103 108 0 29 chr9 16238489 16238803 -101623824 - AluSx SINE Alu -6 306 2 23 0 0 29 chr9 16238803 16238824 -101623803 + AT_rich Low_complexity Low_complexity 12 33 0 1851 167 7 7 chr9 16238864 16239163 -101623464 - AluJb SINE Alu -13 299 1 2241 109 3 0 chr9 16239321 16239615 -101623012 - AluSx SINE Alu -17 295 1 326 311 44 30 chr9 16239667 16239802 -101622825 - MIR SINE MIR -104 158 22 1037 172 0 0 chr9 16239945 16240108 -101622519 - FAM SINE Alu -12 163 1 284 247 11 65 chr9 16240148 16240241 -101622386 + MIR3 SINE MIR 12 99 -109 445 241 38 15 chr9 16240253 16240386 -101622241 - MIR SINE MIR -8 254 119 2324 106 3 0 chr9 16240407 16240709 -101621918 - AluSq SINE Alu -10 303 1 210 352 0 0 chr9 16240728 16240799 -101621828 + MIR SINE MIR 145 215 -47 423 325 33 7 chr9 16241214 16241365 -101621262 - MER5B DNA MER1_type -12 166 12 2229 102 0 0 chr9 16241697 16242019 -101620608 + AluSq SINE Alu 1 322 0 351 320 49 0 chr9 16242046 16242168 -101620459 - L2 LINE L2 -4 3309 3182 2436 46 0 7 chr9 16242688 16243002 -101619625 - AluY SINE Alu 0 312 1 701 211 7 0 chr9 16243281 16243428 -101619199 - L1PB4 LINE L1 -7 6149 6002 233 287 64 0 chr9 16243778 16243872 -101618755 - L2 LINE L2 -905 2409 2310 1613 183 64 117 chr9 16243872 16244087 -101618540 + LTR8 LTR ERV1 1 226 -465 2415 146 72 66 chr9 16244087 16244574 -101618053 + LTR2B LTR ERV1 1 490 0 1613 183 64 117 chr9 16244574 16244614 -101618013 + LTR8 LTR ERV1 226 267 -424 2216 101 3 0 chr9 16244614 16244911 -101617716 + AluSg SINE Alu 1 298 -12 1613 183 64 117 chr9 16244911 16245200 -101617427 + LTR8 LTR ERV1 267 517 -174 2230 117 0 0 chr9 16245200 16245498 -101617129 - AluSx SINE Alu -14 298 1 4964 115 23 16 chr9 16245602 16246351 -101616276 - MER4E LTR ERV1 -25 754 1 511 126 0 32 chr9 16246661 16246756 -101615871 + L1PA13 LINE L1 6058 6149 -14 2912 121 17 46 chr9 16246775 16247006 -101615621 + MER4E LTR ERV1 28 264 -502 2117 92 50 0 chr9 16247006 16247288 -101615339 - AluSp SINE Alu -17 296 1 2912 121 17 46 chr9 16247288 16247632 -101614995 + MER4E LTR ERV1 264 766 0 189 107 0 0 chr9 16247655 16247683 -101614944 + (A)n Simple_repeat Simple_repeat 1 28 0 846 192 28 11 chr9 16248079 16248256 -101614371 - FRAM SINE Alu 0 176 1 826 153 15 0 chr9 16249226 16249357 -101613270 - FRAM SINE Alu -12 164 32 1352 183 0 56 chr9 16249393 16249661 -101612966 - AluJo SINE Alu -49 263 11 895 226 31 44 chr9 16249700 16249926 -101612701 - MER87 LTR ERV1 -318 223 1 301 250 67 10 chr9 16250012 16250116 -101612511 - L1M4 LINE L1 -1308 4838 4729 1535 92 15 0 chr9 16250379 16250574 -101612053 - AluSg SINE Alu -6 306 109 3908 86 2 6 chr9 16250574 16251087 -101611540 - MER9 LTR ERVK 0 511 1 899 89 0 0 chr9 16251087 16251199 -101611428 - AluSg SINE Alu -198 112 1 1213 296 125 8 chr9 16251210 16251826 -101610801 - L1MC4a LINE L1 -1633 6175 5488 3100 99 24 79 chr9 16251829 16252362 -101610265 + MER39B LTR ERV1 1 504 -149 749 90 0 0 chr9 16253216 16253316 -101609311 - AluY SINE Alu -15 296 197 561 133 153 0 chr9 16253321 16253419 -101609208 + MER39B LTR ERV1 539 651 -2 816 304 27 14 chr9 16253700 16254065 -101608562 - L1MC4a LINE L1 -1898 4248 3879 942 137 0 20 chr9 16254188 16254334 -101608293 - AluSg/x SINE Alu -16 296 154 333 0 0 0 chr9 16254355 16254392 -101608235 + (TA)n Simple_repeat Simple_repeat 1 37 0 2174 95 7 0 chr9 16254550 16254834 -101607793 - AluSp SINE Alu -27 286 1 257 227 91 11 chr9 16255055 16255143 -101607484 - MIR SINE MIR -82 180 86 1020 183 6 0 chr9 16255222 16255391 -101607236 - AluJo/FRAM SINE Alu -9 303 134 2216 106 3 0 chr9 16255391 16255692 -101606935 - AluSg SINE Alu -8 302 1 1042 165 102 82 chr9 16255693 16255732 -101606895 - LTR8 LTR ERV1 -431 260 223 2415 146 72 66 chr9 16255732 16256219 -101606408 - LTR2B LTR ERV1 0 490 1 1042 165 102 82 chr9 16256219 16256434 -101606193 - LTR8 LTR ERV1 -468 223 1 233 287 64 0 chr9 16256434 16256528 -101606099 + L2 LINE L2 2310 2409 -905 701 211 7 0 chr9 16256878 16257025 -101605602 + L1PB4 LINE L1 6002 6149 -7 2423 42 0 11 chr9 16257304 16257619 -101605008 + AluY SINE Alu 1 312 0 351 320 49 0 chr9 16258139 16258261 -101604366 + L2 LINE L2 3182 3309 -4 2193 102 0 3 chr9 16258288 16258603 -101604024 - AluSq SINE Alu 0 314 1 423 325 33 7 chr9 16258935 16259086 -101603541 + MER5B DNA MER1_type 12 166 -12 210 352 0 0 chr9 16259501 16259572 -101603055 - MIR SINE MIR -47 215 145 2165 120 3 7 chr9 16259591 16259892 -101602735 + AluSq SINE Alu 1 300 -13 230 157 0 57 chr9 16261415 16261485 -101601142 + GA-rich Low_complexity Low_complexity 1 66 0 1565 210 41 34 chr9 16263017 16263226 -101599401 - LTR37B LTR ERV1 -1 467 261 2207 130 15 21 chr9 16263226 16263565 -101599062 + MER1B DNA MER1_type 1 337 0 1565 210 41 34 chr9 16263565 16263769 -101598858 - LTR37B LTR ERV1 -207 261 51 234 257 34 74 chr9 16263882 16264030 -101598597 + MIR SINE MIR 118 259 -3 504 168 147 0 chr9 16264198 16264293 -101598334 - FLAM_A SINE Alu -24 118 10 183 80 0 0 chr9 16264303 16264328 -101598299 + (T)n Simple_repeat Simple_repeat 1 25 0 23 33 0 0 chr9 16265659 16265689 -101596938 + AT_rich Low_complexity Low_complexity 1 30 0 1759 145 0 21 chr9 16265689 16265978 -101596649 - AluSg SINE Alu -25 285 3 603 140 0 0 chr9 16266049 16266142 -101596485 + AluSp/q SINE Alu 202 294 -19 564 197 39 39 chr9 16266143 16266270 -101596357 - AluJo/FLAM SINE Alu -175 127 1 496 185 34 8 chr9 16266284 16266403 -101596224 - L1MB7 LINE L1 0 6184 6063 753 260 56 20 chr9 16266595 16266845 -101595782 + MIR SINE MIR 1 259 -3 834 220 141 4 chr9 16266886 16267127 -101595500 + L1ME1 LINE L1 5881 6154 -12 521 241 9 0 chr9 16267210 16267322 -101595305 - L2 LINE L2 -4 3309 3197 21 36 0 0 chr9 16268248 16268276 -101594351 + GC_rich Low_complexity Low_complexity 1 28 0 351 284 103 9 chr9 16269364 16269480 -101593147 + MER94 DNA DNA 8 134 0 260 158 0 18 chr9 16269585 16269642 -101592985 + L2 LINE L2 3257 3312 -1 181 224 163 0 chr9 16269706 16269755 -101592872 - L2 LINE L2 -1 3271 3215 344 237 21 21 chr9 16270305 16270402 -101592225 - L2 LINE L2 -5 3308 3212 261 238 57 57 chr9 16270406 16270528 -101592099 + MIR3 SINE MIR 82 203 -5 2124 204 47 36 chr9 16270772 16271275 -101591352 + MER106B DNA MER1_type 35 546 -513 2280 93 3 10 chr9 16271275 16271576 -101591051 + AluSq SINE Alu 1 299 -14 2124 204 47 36 chr9 16271576 16271600 -101591027 + MER106B DNA MER1_type 546 568 -491 1264 145 28 33 chr9 16271617 16271831 -101590796 + AluJo SINE Alu 86 298 -14 846 115 96 46 chr9 16271835 16272032 -101590595 + MER106B DNA MER1_type 590 800 -259 2396 69 0 3 chr9 16272032 16272322 -101590305 - AluSc SINE Alu -20 289 1 846 115 96 46 chr9 16272322 16272342 -101590285 + MER106B DNA MER1_type 800 818 -241 2030 136 3 17 chr9 16272345 16272647 -101589980 - AluSq SINE Alu -15 298 1 235 156 0 22 chr9 16272649 16272694 -101589933 + MER2 DNA MER2_type 196 239 -106 724 81 198 0 chr9 16272727 16272838 -101589789 - LTR12 LTR ERV1 0 714 582 4395 127 57 73 chr9 16272838 16273674 -101588953 - LTR12 LTR ERV1 0 826 4 2024 99 3 14 chr9 16273679 16273963 -101588664 + AluSp SINE Alu 31 311 -2 501 162 121 10 chr9 16273968 16274067 -101588560 + MER2 DNA MER2_type 235 344 -1 841 106 16 0 chr9 16274198 16274321 -101588306 - L1PA8 LINE L1 -77 6095 5971 690 164 0 0 chr9 16274421 16274525 -101588102 - MER1B DNA MER1_type -193 104 1 * 868 187 56 14 chr9 16274525 16274734 -101587893 + LTR37B LTR ERV1 250 467 -1 230 157 0 57 chr9 16276266 16276336 -101586291 + CT-rich Low_complexity Low_complexity 1 66 0 2345 97 3 0 chr9 16277857 16278155 -101584472 - AluSp SINE Alu -14 299 1 185 304 128 0 chr9 16279183 16279285 -101583342 + MIR SINE MIR 129 243 -19 203 303 144 53 chr9 16279477 16279609 -101583018 + MIR SINE MIR 4 147 -115 2176 89 18 0 chr9 16279961 16280243 -101582384 + AluSp SINE Alu 1 287 -26 237 314 0 23 chr9 16280420 16280506 -101582121 + MIR3 SINE MIR 84 167 -41 22 35 0 0 chr9 16281443 16281472 -101581155 + AT_rich Low_complexity Low_complexity 1 29 0 491 236 61 24 chr9 16281657 16281822 -101580805 - MIR SINE MIR 0 262 92 278 301 62 14 chr9 16281808 16281954 -101580673 + MIR SINE MIR 97 249 -13 * 372 299 37 0 chr9 16282259 16282366 -101580261 + MIR SINE MIR 18 128 -134 728 198 21 109 chr9 16282626 16282698 -101579929 + MER58A DNA MER1_type 3 80 -2340 2368 108 0 6 chr9 16282698 16283012 -101579615 - AluSx SINE Alu 0 312 1 728 198 21 109 chr9 16283012 16283177 -101579450 + MER58A DNA MER1_type 80 219 -5 186 171 0 0 chr9 16283815 16283856 -101578771 + T-rich Low_complexity Low_complexity 1 41 0 183 42 0 0 chr9 16283993 16284017 -101578610 + (CAA)n Simple_repeat Simple_repeat 2 25 0 404 277 101 0 chr9 16284023 16284182 -101578445 + MIR SINE MIR 82 256 -6 225 0 0 0 chr9 16284440 16284465 -101578162 + (A)n Simple_repeat Simple_repeat 1 25 0 1924 150 3 7 chr9 16284493 16284786 -101577841 - AluSx SINE Alu -14 298 7 777 223 38 46 chr9 16285423 16285661 -101576966 - MIR SINE MIR 0 262 27 419 305 200 31 chr9 16286459 16287004 -101575623 + L1MC/D LINE L1 4758 5394 -752 283 322 155 20 chr9 16287016 16287320 -101575307 + L1MC/D LINE L1 5439 5783 -2025 25 83 0 0 chr9 16287619 16287679 -101574948 + AT_rich Low_complexity Low_complexity 1 60 0 2016 137 0 0 chr9 16287792 16288076 -101574551 + AluSg SINE Alu 2 285 -25 23 33 0 0 chr9 16288076 16288106 -101574521 + AT_rich Low_complexity Low_complexity 1 30 0 442 255 126 97 chr9 16289156 16289434 -101573193 + L2 LINE L2 3028 3313 0 258 85 0 0 chr9 16289830 16289877 -101572750 - LTR66 LTR ERVL -170 440 394 224 212 15 0 chr9 16289885 16289951 -101572676 + (TA)n Simple_repeat Simple_repeat 2 68 0 627 192 31 31 chr9 16290120 16290250 -101572377 + FLAM_A SINE Alu 3 132 -1 279 160 40 0 chr9 16290250 16290325 -101572302 + GA-rich Low_complexity Low_complexity 1 78 0 418 155 0 28 chr9 16290432 16290503 -101572124 + MLT1J LTR MaLR 100 168 -343 8133 113 14 10 chr9 16290570 16291108 -101571519 + Tigger1 DNA MER2_type 616 1150 -1268 2367 97 0 0 chr9 16291108 16291407 -101571220 + AluSc SINE Alu 1 299 -10 8133 113 14 10 chr9 16291407 16292055 -101570572 + Tigger1 DNA MER2_type 1150 1807 -611 1351 213 17 35 chr9 16292056 16292335 -101570292 - AluJo SINE Alu 0 332 57 2094 141 34 52 chr9 16292335 16292717 -101569910 - THE1C LTR MaLR 0 375 1 1351 213 17 35 chr9 16292717 16292774 -101569853 - AluJo SINE Alu -275 57 1 3539 173 11 11 chr9 16292775 16293019 -101569608 + Tigger1 DNA MER2_type 1798 2041 -377 2273 99 0 23 chr9 16293019 16293323 -101569304 + AluSq SINE Alu 3 299 -14 3539 173 11 11 chr9 16293323 16293698 -101568929 + Tigger1 DNA MER2_type 2040 2417 -1 1071 166 0 11 chr9 16294079 16294260 -101568367 + FRAM SINE Alu 1 175 -1 2502 56 0 16 chr9 16294322 16294627 -101568000 + AluY SINE Alu 2 301 -10 407 245 108 0 chr9 16294627 16294729 -101567898 - MER5A DNA MER1_type 0 189 77 224 196 84 103 chr9 16294651 16294732 -101567895 + MER5A DNA MER1_type 45 125 -64 * 204 40 0 0 chr9 16294732 16294757 -101567870 + (CTG)n Simple_repeat Simple_repeat 2 26 0 224 196 84 103 chr9 16294757 16294782 -101567845 + MER5A DNA MER1_type 125 149 -40 1988 185 30 22 chr9 16294901 16295263 -101567364 + MLT1A1 LTR MaLR 1 365 0 1690 81 31 0 chr9 16295344 16295567 -101567060 - LTR8 LTR ERV1 -356 335 106 308 119 0 0 chr9 16295569 16295611 -101567016 - Alu SINE Alu -258 44 3 1804 147 3 20 chr9 16296097 16296327 -101566300 - AluJo SINE Alu -12 300 75 5257 82 14 54 chr9 16296327 16297047 -101565580 - LTR8 LTR ERV1 0 691 1 1804 147 3 20 chr9 16297047 16297109 -101565518 - AluJo SINE Alu -237 75 13 1918 112 56 0 chr9 16297140 16297434 -101565193 - AluSx SINE Alu 0 311 3 2360 83 7 0 chr9 16297494 16297794 -101564833 - AluSp SINE Alu -11 302 1 276 227 91 11 chr9 16298015 16298103 -101564524 - MIR SINE MIR -82 180 86 1681 168 3 48 chr9 16298182 16298351 -101564276 - AluJo SINE Alu -9 303 153 2197 122 0 3 chr9 16298351 16298654 -101563973 - AluSg SINE Alu -8 302 1 1681 168 3 48 chr9 16298654 16298799 -101563828 - AluJo SINE Alu -159 153 3 207 0 0 0 chr9 16298807 16298830 -101563797 + (T)n Simple_repeat Simple_repeat 1 23 0 2220 113 7 0 chr9 16298961 16299261 -101563366 - AluSp SINE Alu -11 302 1 1157 213 38 33 chr9 16299471 16299794 -101562833 + L1MB5 LINE L1 3020 3347 -2799 2332 76 0 23 chr9 16299794 16300095 -101562532 + AluY SINE Alu 1 294 -17 1157 213 38 33 chr9 16300095 16300138 -101562489 + L1MB5 LINE L1 3347 3388 -2758 1377 169 0 4 chr9 16300147 16300389 -101562238 + L1MB5 LINE L1 4447 4687 -1459 2493 105 11 29 chr9 16300390 16300550 -101562077 + THE1C LTR MaLR 1 162 -213 1891 114 0 120 chr9 16300550 16300884 -101561743 - AluSg SINE Alu -5 295 2 2493 105 11 29 chr9 16300884 16301105 -101561522 + THE1C LTR MaLR 162 375 0 11301 111 37 5 chr9 16301105 16302636 -101559991 + THE1C-int LTR MaLR 1 1580 0 2645 106 21 24 chr9 16302636 16303012 -101559615 + THE1C LTR MaLR 1 375 0 2246 202 22 27 chr9 16303012 16303480 -101559147 + L1MB5 LINE L1 4684 5150 -996 1524 175 42 52 chr9 16303480 16303622 -101559005 + AluJo SINE Alu 3 145 -167 2249 110 0 7 chr9 16303622 16303921 -101558706 + AluY SINE Alu 1 297 -14 1524 175 42 52 chr9 16303921 16304086 -101558541 + AluJo SINE Alu 145 307 -5 2246 202 22 27 chr9 16304086 16304171 -101558456 + L1MB5 LINE L1 5150 5234 -912 718 221 0 7 chr9 16304175 16304311 -101558316 + FLAM_A SINE Alu 6 140 -2 560 231 52 17 chr9 16304318 16304491 -101558136 + L1MB5 LINE L1 5221 5399 -747 * 1919 133 10 17 chr9 16304473 16304774 -101557853 + L1PA15 LINE L1 5811 6109 -56 2279 122 8 62 chr9 16304774 16304843 -101557784 - THE1B LTR MaLR 0 364 293 8355 13 5 0 chr9 16304843 16305900 -101556727 + L1PA2 LINE L1 5095 6155 0 2279 122 8 62 chr9 16305900 16306215 -101556412 - THE1B LTR MaLR -71 293 1 3490 61 2 37 chr9 16306215 16306399 -101556228 - THE1B-int LTR MaLR 0 1580 1391 2218 116 3 0 chr9 16306399 16306700 -101555927 + AluSp SINE Alu 5 306 -7 3490 61 2 37 chr9 16306700 16306975 -101555652 - THE1B-int LTR MaLR -189 1391 1137 4029 154 42 27 chr9 16307012 16307790 -101554837 + L1MB5 LINE L1 5385 6174 0 2296 84 3 0 chr9 16307906 16308204 -101554423 + AluSp SINE Alu 1 299 -14 637 243 6 18 chr9 16308387 16308556 -101554071 - L2 LINE L2 -34 3279 3113 391 222 21 69 chr9 16308588 16308679 -101553948 + L1ME LINE L1 10 94 -5976 2270 46 3 14 chr9 16308679 16309000 -101553627 + AluY SINE Alu 1 318 0 391 222 21 69 chr9 16309000 16309051 -101553576 + L1ME LINE L1 94 146 -5924 718 241 45 78 chr9 16309084 16309416 -101553211 + L1ME LINE L1 266 586 -5484 645 189 116 79 chr9 16309559 16309749 -101552878 - MER34B LTR ERV1 -358 207 11 1587 179 29 4 chr9 16309879 16310177 -101552450 - AluJo SINE Alu 0 305 1 723 251 82 82 chr9 16310198 16310394 -101552233 + L1MC4a LINE L1 5556 5751 -2057 1878 167 3 7 chr9 16310394 16310694 -101551933 + AluJb SINE Alu 1 299 -13 723 251 82 82 chr9 16310694 16310755 -101551872 + L1MC4a LINE L1 5751 5811 -1997 2089 108 0 29 chr9 16310755 16311070 -101551557 + AluSx SINE Alu 2 307 -5 723 251 82 82 chr9 16311070 16311154 -101551473 + L1MC4a LINE L1 5810 5898 -1910 685 278 85 14 chr9 16311154 16311366 -101551261 + MLT1J LTR MaLR 13 239 -272 381 244 74 30 chr9 16311462 16311597 -101551030 + MLT1J LTR MaLR 371 511 0 931 298 20 0 chr9 16311638 16311930 -101550697 - L1MC4a LINE L1 -1919 5889 5592 306 0 0 0 chr9 16311934 16311968 -101550659 + (TG)n Simple_repeat Simple_repeat 2 35 0 300 330 47 0 chr9 16312161 16312267 -101550360 + L2 LINE L2 3181 3291 -22 208 229 21 0 chr9 16312267 16312315 -101550312 + (TGGA)n Simple_repeat Simple_repeat 1 49 0 2195 120 0 0 chr9 16313499 16313798 -101548829 - AluSx SINE Alu -13 299 1 397 119 0 15 chr9 16313808 16313875 -101548752 - L1MA10 LINE L1 -13 6321 6256 2042 120 7 26 chr9 16313975 16314283 -101548344 - THE1B LTR MaLR -62 302 1 3444 65 2 37 chr9 16314283 16314467 -101548160 - THE1B-int LTR MaLR 0 1580 1391 2218 116 3 0 chr9 16314467 16314768 -101547859 + AluSp SINE Alu 5 306 -7 3444 65 2 37 chr9 16314768 16315043 -101547584 - THE1B-int LTR MaLR -189 1391 1137 4033 154 42 27 chr9 16315080 16315858 -101546769 + L1MB5 LINE L1 5385 6174 0 2270 87 3 0 chr9 16315973 16316271 -101546356 + AluSp SINE Alu 1 299 -14 579 253 5 43 chr9 16316454 16316640 -101545987 - L2 LINE L2 -34 3279 3101 387 220 21 64 chr9 16316655 16316743 -101545884 + L1ME LINE L1 12 94 -5976 2255 42 3 18 chr9 16316743 16317065 -101545562 + AluY SINE Alu 1 318 0 387 220 21 64 chr9 16317065 16317116 -101545511 + L1ME LINE L1 94 146 -5924 718 241 45 78 chr9 16317149 16317481 -101545146 + L1ME LINE L1 266 586 -5484 645 189 116 79 chr9 16317624 16317814 -101544813 - MER34B LTR ERV1 -358 207 11 1589 179 29 4 chr9 16317939 16318244 -101544383 - AluJo SINE Alu 0 312 1 625 264 97 31 chr9 16318265 16318461 -101544166 + L1MC4a LINE L1 5556 5774 -2034 1878 167 3 7 chr9 16318461 16318761 -101543866 + AluJb SINE Alu 1 299 -13 625 264 97 31 chr9 16318761 16318822 -101543805 + L1MC4a LINE L1 5774 5830 -1978 2089 108 0 29 chr9 16318822 16319137 -101543490 + AluSx SINE Alu 2 307 -5 685 278 85 14 chr9 16319221 16319433 -101543194 + MLT1J LTR MaLR 13 239 -272 381 244 74 30 chr9 16319529 16319664 -101542963 + MLT1J LTR MaLR 371 511 0 244 284 80 0 chr9 16319667 16319755 -101542872 - L1ME LINE L1 -507 5614 5520 211 338 81 0 chr9 16320233 16320307 -101542320 - L2 LINE L2 -173 3099 3020 2104 83 0 11 chr9 16320720 16320996 -101541631 + AluSx SINE Alu 39 311 -1 21 0 0 0 chr9 16320996 16321017 -101541610 + AT_rich Low_complexity Low_complexity 1 21 0 1844 156 20 0 chr9 16321591 16321886 -101540741 - AluJo SINE Alu -11 301 1 318 51 0 0 chr9 16322304 16322343 -101540284 + U2 snRNA snRNA 1 39 -149 229 242 161 0 chr9 16322735 16322797 -101539830 - HsTC2 DNA Tc2 -4 1894 1823 773 230 40 62 chr9 16322962 16323266 -101539361 - L1MB7 LINE L1 0 6184 5888 519 175 48 0 chr9 16323295 16323398 -101539229 - Tigger5 DNA MER2_type -1 2322 2215 363 182 0 0 chr9 16323390 16323445 -101539182 - Tigger5 DNA MER2_type -2268 55 1 * 1261 183 13 0 chr9 16323446 16323681 -101538946 - L1MB7 LINE L1 -356 5828 5591 354 360 13 7 chr9 16323708 16323858 -101538769 + L1MEd LINE L1 498 648 -5471 592 299 50 84 chr9 16324606 16325010 -101537617 + L2 LINE L2 2309 2698 -616 1523 68 5 5 chr9 16325011 16325203 -101537424 - AluSq SINE Alu -17 296 105 764 98 9 0 chr9 16325309 16325421 -101537206 + L1PBa LINE L1 2788 2900 -3963 1983 107 0 0 chr9 16325423 16325675 -101536952 + AluSc SINE Alu 1 252 -57 1793 133 0 4 chr9 16325676 16325924 -101536703 + AluSq SINE Alu 1 247 -66 1500 165 84 130 chr9 16326423 16326909 -101535718 + MER4C LTR ERV1 1 464 -1 183 266 16 31 chr9 16326943 16327007 -101535620 - L2 LINE L2 -610 2704 2642 335 221 66 49 chr9 16327120 16327242 -101535385 + L1ME4a LINE L1 5972 6095 -26 1630 77 0 0 chr9 16327543 16327737 -101534890 + AluSc SINE Alu 13 206 -103 1777 166 118 46 chr9 16327750 16327890 -101534737 - LTR10A LTR ERV1 -61 548 419 2467 70 0 3 chr9 16327890 16328192 -101534435 - AluY SINE Alu -10 301 1 1777 166 118 46 chr9 16328192 16328517 -101534110 - LTR10A LTR ERV1 -190 419 2 498 141 0 13 chr9 16328517 16328595 -101534032 + AluSg/x SINE Alu 201 277 -32 1217 181 104 102 chr9 16328600 16329041 -101533586 - LTR7 LTR ERV1 -8 442 1 196 67 0 67 chr9 16329051 16329096 -101533531 + (TAAAAA)n Simple_repeat Simple_repeat 2 43 0 335 165 127 13 chr9 16329373 16329452 -101533175 + MIR SINE MIR 105 192 -70 2385 95 0 3 chr9 16329765 16330070 -101532557 - AluSx SINE Alu -8 304 1 372 156 0 16 chr9 16330380 16330444 -101532183 - MER116 DNA Mariner -11 69 7 276 100 0 0 chr9 16330452 16330492 -101532135 - MIR SINE MIR -106 156 117 830 190 91 11 chr9 16330742 16330969 -101531658 + AluJo SINE Alu 5 296 -16 260 256 0 77 chr9 16331331 16331362 -101531265 - L2 LINE L2 -1 3271 3239 2062 161 125 10 chr9 16331362 16331778 -101530849 + MLT2C2 LTR ERVL 1 464 0 260 256 0 77 chr9 16331778 16331824 -101530803 - L2 LINE L2 -33 3239 3200 1745 147 0 43 chr9 16331827 16332127 -101530500 + AluJo SINE Alu 1 287 -25 251 364 74 0 chr9 16332695 16332816 -101529811 - L2 LINE L2 -6 3266 3137 389 304 113 13 chr9 16333164 16333178 -101529449 + L1ME LINE L1 5457 5468 -702 2337 99 0 3 chr9 16333178 16333481 -101529146 + AluSq SINE Alu 1 302 -11 389 304 113 13 chr9 16333481 16333707 -101528920 + L1ME LINE L1 5468 5717 -453 725 164 0 57 chr9 16334159 16334299 -101528328 + FLAM_C SINE Alu 11 142 -1 342 148 49 0 chr9 16334305 16334366 -101528261 + L1 LINE L1 2687 2750 -3396 472 184 29 52 chr9 16334372 16334508 -101528119 + L1M1 LINE L1 3296 3428 -4137 507 297 70 84 chr9 16334536 16334744 -101527883 - LTR67 LTR ERVL -19 538 328 1757 160 0 4 chr9 16334744 16335019 -101527608 + AluSx SINE Alu 35 308 -4 507 297 70 84 chr9 16335019 16335355 -101527272 - LTR67 LTR ERVL -229 328 2 2554 112 54 56 chr9 16335513 16335723 -101526904 + MSTA LTR MaLR 1 210 -218 1939 62 0 21 chr9 16335723 16335965 -101526662 + AluY SINE Alu 1 237 -74 2554 112 54 56 chr9 16335965 16336183 -101526444 + MSTA LTR MaLR 210 428 0 3343 172 14 14 chr9 16337225 16337848 -101524779 + L1MC3 LINE L1 7154 7776 -9 26 0 0 0 chr9 16338084 16338110 -101524517 + AT_rich Low_complexity Low_complexity 1 26 0 633 248 0 0 chr9 16338280 16338409 -101524218 + MLT1A2 LTR MaLR 33 161 -213 2411 63 3 3 chr9 16338416 16338718 -101523909 + AluY SINE Alu 1 302 -9 279 136 7 0 chr9 16338770 16338828 -101523799 - L1MC4 LINE L1 0 8042 7936 953 116 22 0 chr9 16338837 16338975 -101523652 + L1MA3 LINE L1 6165 6305 0 2444 48 0 3 chr9 16339002 16339297 -101523330 + AluY SINE Alu 1 294 -17 1757 243 79 46 chr9 16339434 16340343 -101522284 - L1MC4 LINE L1 -141 7901 6963 1977 67 7 19 chr9 16341138 16341408 -101521219 + AluY SINE Alu 45 311 0 214 332 70 11 chr9 16341716 16341903 -101520724 + L2 LINE L2 2142 2339 -975 306 321 153 21 chr9 16342147 16342337 -101520290 + MIR SINE MIR 38 252 -10 2268 117 0 3 chr9 16342361 16342669 -101519958 - AluSg SINE Alu -3 307 1 282 205 168 0 chr9 16342780 16342865 -101519762 + MLT1I LTR MaLR 40 166 -299 614 312 35 52 chr9 16343244 16343725 -101518902 - MLT1K LTR MaLR -3 473 1 1655 160 0 35 chr9 16344031 16344319 -101518308 + AluJb SINE Alu 1 278 -34 189 214 0 0 chr9 16344321 16344363 -101518264 + GA-rich Low_complexity Low_complexity 3 44 0 232 269 75 21 chr9 16344902 16344995 -101517632 + L2 LINE L2 3146 3243 -29 2518 223 75 43 chr9 16345534 16346409 -101516218 - L1MD2 LINE L1 -412 5947 5008 2035 118 11 0 chr9 16346409 16346716 -101515911 - AluSx SINE Alu 0 310 1 2518 223 75 43 chr9 16346716 16347391 -101515236 - L1MD2 LINE L1 -1351 5008 4356 2225 82 3 10 chr9 16347436 16347740 -101514887 - AluY SINE Alu -9 302 1 21 0 0 0 chr9 16347740 16347761 -101514866 + AT_rich Low_complexity Low_complexity 1 21 0 225 353 95 14 chr9 16348893 16349176 -101513451 + L1MC/D LINE L1 5510 5815 -1993 2353 75 0 10 chr9 16351841 16352136 -101510491 - AluSp SINE Alu -9 304 13 1147 177 27 4 chr9 16352275 16352535 -101510092 + L1MA4 LINE L1 6028 6293 -7 225 321 27 0 chr9 16352571 16352683 -101509944 + GA-rich Low_complexity Low_complexity 1 115 0 555 29 0 0 chr9 16353738 16353807 -101508820 + (TG)n Simple_repeat Simple_repeat 1 69 0 1407 166 55 60 chr9 16353838 16354255 -101508372 + LTR37A LTR ERV1 3 417 -9 1373 154 82 26 chr9 16354416 16354683 -101507944 + AluJo SINE Alu 13 294 -18 2117 108 3 10 chr9 16354710 16354998 -101507629 + AluSq SINE Alu 14 299 -14 2189 119 0 19 chr9 16355003 16355315 -101507312 + AluSx SINE Alu 4 309 -3 311 278 96 61 chr9 16355544 16355742 -101506885 + L2 LINE L2 3102 3306 -7 670 279 99 36 chr9 16356157 16356490 -101506137 - L2 LINE L2 -9 3304 2951 182 237 0 0 chr9 16357140 16357178 -101505449 - MER5A DNA MER1_type -3 186 149 1841 73 150 0 chr9 16357353 16357613 -101505014 + AluSg SINE Alu 2 300 0 203 298 99 30 chr9 16357663 16357794 -101504833 + MIR SINE MIR 3 142 -120 23 0 0 0 chr9 16358052 16358075 -101504552 + AT_rich Low_complexity Low_complexity 1 23 0 432 252 0 55 chr9 16358546 16358673 -101503954 + MIR SINE MIR 65 184 -78 211 275 44 66 chr9 16359852 16359943 -101502684 + MIR SINE MIR 97 185 -77 287 167 167 0 chr9 16360100 16360190 -101502437 - L1MD3 LINE L1 -12 7983 7879 501 158 59 0 chr9 16360190 16360291 -101502336 - L1MC4 LINE L1 -473 7569 7463 639 172 0 0 chr9 16360291 16360390 -101502237 + 5S rRNA rRNA 1 99 -22 1857 229 102 8 chr9 16360390 16361040 -101501587 - L1MC4a LINE L1 -421 7387 6677 778 103 22 114 chr9 16361696 16361880 -101500747 - L1MB2 LINE L1 0 6171 6005 771 125 56 49 chr9 16363185 16363329 -101499298 + MER46A DNA MER2_type 1 145 -91 21 0 0 0 chr9 16364052 16364073 -101498554 + AT_rich Low_complexity Low_complexity 1 21 0 227 30 0 0 chr9 16364930 16364963 -101497664 + L1ME4a LINE L1 5963 5995 -126 29 47 0 0 chr9 16365033 16365076 -101497551 + AT_rich Low_complexity Low_complexity 1 43 0 384 306 125 36 chr9 16365649 16366041 -101496586 - L1ME4a LINE L1 -60 6061 5635 209 56 0 28 chr9 16366399 16366435 -101496192 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 2351 82 0 3 chr9 16366454 16366748 -101495879 + AluSq SINE Alu 5 297 -16 21 71 0 0 chr9 16367383 16367425 -101495202 + AT_rich Low_complexity Low_complexity 1 42 0 2319 93 0 0 chr9 16367606 16367895 -101494732 + AluSq SINE Alu 1 289 -24 637 227 61 4 chr9 16367899 16368216 -101494411 + MER93b LTR ERV1 7 373 0 1032 211 95 42 chr9 16368697 16369034 -101493593 + LTR37B LTR ERV1 24 378 -90 535 348 85 25 chr9 16369073 16369475 -101493152 - L1ME4a LINE L1 -1261 4885 4460 2438 153 40 78 chr9 16369638 16370126 -101492501 - L1MB8 LINE L1 0 6178 5720 2356 89 0 13 chr9 16370126 16370430 -101492197 + AluSx SINE Alu 1 300 -12 2438 153 40 78 chr9 16370430 16370594 -101492033 - L1MB8 LINE L1 -458 5720 5551 837 164 15 0 chr9 16370605 16370739 -101491888 - AluJo SINE Alu -176 136 1 927 186 105 8 chr9 16370748 16370996 -101491631 - L1MB8 LINE L1 -629 5555 5284 22 70 0 0 chr9 16371177 16371220 -101491407 + AT_rich Low_complexity Low_complexity 1 43 0 2439 227 71 14 chr9 16371423 16372115 -101490512 + L1PB4 LINE L1 1269 1999 -4850 1585 169 23 19 chr9 16372376 16372684 -101489943 - HUERS-P3 LTR ERV1 -8382 537 229 5235 53 12 5 chr9 16372750 16373867 -101488760 + SVA Other Other 1 1401 0 216 0 0 0 chr9 16373870 16373894 -101488733 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 9117 211 21 30 chr9 16373896 16375854 -101486773 + L1PB4 LINE L1 1994 3884 -2965 2174 137 0 0 chr9 16375854 16376154 -101486473 + AluSx SINE Alu 1 300 -12 9117 211 21 30 chr9 16376154 16377524 -101485103 + L1PB4 LINE L1 3884 5265 -1584 1824 181 3 0 chr9 16377524 16377817 -101484810 + AluJb SINE Alu 1 294 -18 4666 156 17 11 chr9 16377818 16378744 -101483883 + L1PB4 LINE L1 5928 6858 -1 317 292 123 27 chr9 16380321 16380540 -101482087 + L3 LINE CR1 795 1034 -543 2242 112 0 10 chr9 16380566 16380861 -101481766 - AluSx SINE Alu -12 300 9 229 278 217 35 chr9 16380894 16381009 -101481618 + L2 LINE L2 3178 3313 0 2054 155 0 3 chr9 16381123 16381433 -101481194 + AluJb SINE Alu 1 309 -3 594 195 82 18 chr9 16381528 16381699 -101480928 + L1MC4 LINE L1 7874 8042 0 767 160 33 7 chr9 16382270 16382420 -101480207 + L1M1 LINE L1 17 170 -7395 1307 182 27 4 chr9 16382451 16382676 -101479951 + AluJo SINE Alu 1 230 -82 311 256 37 60 chr9 16383123 16383296 -101479331 + MIR3 SINE MIR 1 167 -67 214 397 64 19 chr9 16383781 16383937 -101478690 + L2 LINE L2 3033 3195 -77 2189 83 3 17 chr9 16384796 16385106 -101477521 + AluSp SINE Alu 1 306 0 1424 255 123 13 chr9 16385319 16385782 -101476845 + MLT1G1 LTR MaLR 73 586 -9 571 302 117 66 chr9 16385789 16386200 -101476427 + L3 LINE CR1 985 1416 -161 183 156 0 0 chr9 16386656 16386688 -101475939 + A-rich Low_complexity Low_complexity 1 32 0 306 284 39 10 chr9 16386792 16386894 -101475733 + MIR SINE MIR 81 185 -77 184 344 56 11 chr9 16387033 16387123 -101475504 + L2 LINE L2 3142 3235 -37 254 269 126 42 chr9 16387307 16387426 -101475201 + L2 LINE L2 3170 3298 -15 416 19 0 19 chr9 16387427 16387481 -101475146 + (TGAA)n Simple_repeat Simple_repeat 1 53 0 2260 99 0 0 chr9 16389748 16390041 -101472586 + AluSg SINE Alu 1 293 -17 1619 141 3 31 chr9 16390133 16390423 -101472204 + AluSp SINE Alu 21 302 -11 1938 112 56 0 chr9 16390483 16390752 -101471875 + AluSx SINE Alu 3 311 0 193 40 0 0 chr9 16390752 16390777 -101471850 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1784 149 6 16 chr9 16390799 16390870 -101471757 + AluJo SINE Alu 13 83 -229 4997 82 14 54 chr9 16390870 16391590 -101471037 + LTR8 LTR ERV1 1 691 0 1784 149 6 16 chr9 16391590 16391819 -101470808 + AluJo SINE Alu 83 299 -13 313 119 0 0 chr9 16392303 16392345 -101470282 + Alu SINE Alu 3 44 -258 1685 81 31 0 chr9 16392347 16392570 -101470057 + LTR8 LTR ERV1 106 335 -356 1866 185 30 22 chr9 16392651 16393013 -101469614 - MLT1A1 LTR MaLR 0 365 1 196 186 88 108 chr9 16393137 16393157 -101469470 - MER5A DNA MER1_type -45 144 125 204 40 0 0 chr9 16393157 16393182 -101469445 + (CAG)n Simple_repeat Simple_repeat 2 26 0 196 186 88 108 chr9 16393182 16393263 -101469364 - MER5A DNA MER1_type -64 125 45 2338 71 3 7 chr9 16393297 16393593 -101469034 - AluY SINE Alu -16 295 1 240 200 0 0 chr9 16393617 16393667 -101468960 + CT-rich Low_complexity Low_complexity 2 51 0 781 216 53 0 chr9 16393671 16393842 -101468785 - L1M4 LINE L1 -1949 4197 4018 712 188 182 11 chr9 16393843 16394024 -101468603 - AluSc SINE Alu -11 298 87 971 210 42 38 chr9 16394027 16394289 -101468338 - L1M4 LINE L1 -2121 4025 3763 198 0 0 0 chr9 16394337 16394359 -101468268 + (TCTCCC)n Simple_repeat Simple_repeat 1 22 0 484 346 50 14 chr9 16394367 16394647 -101467980 + L2 LINE L2 2550 2839 -475 226 258 17 50 chr9 16394874 16394994 -101467633 + L2 LINE L2 3122 3237 -76 903 115 0 89 chr9 16395088 16395127 -101467500 - MSTA LTR MaLR 0 428 387 1971 163 27 0 chr9 16395127 16395428 -101467199 + AluJo SINE Alu 1 309 -3 903 115 0 89 chr9 16395428 16395545 -101467082 - MSTA LTR MaLR -41 387 286 242 393 11 22 chr9 16395685 16395863 -101466764 - MIR SINE MIR -72 190 15 1974 199 54 10 chr9 16395889 16396277 -101466350 - LTR57 LTR ERVL 0 411 7 788 174 0 22 chr9 16396423 16396561 -101466066 + FLAM_C SINE Alu 1 135 -8 259 286 157 11 chr9 16396577 16396762 -101465865 + L1MEc LINE L1 109 320 -6076 1260 215 37 6 chr9 16396906 16397231 -101465396 + L1MEc LINE L1 2554 2888 -3327 1666 176 37 4 chr9 16397268 16397541 -101465086 + AluJo SINE Alu 1 282 -30 243 0 0 0 chr9 16397545 16397572 -101465055 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 893 224 41 27 chr9 16397767 16397986 -101464641 - L1MD2 LINE L1 -472 5887 5666 1970 141 0 52 chr9 16397986 16398173 -101464454 - AluSx SINE Alu -2 310 115 221 0 35 0 chr9 16398173 16398202 -101464425 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1946 134 7 0 chr9 16398202 16398478 -101464149 - AluSg SINE Alu -30 280 3 1970 141 0 52 chr9 16398478 16398616 -101464011 - AluSx SINE Alu -195 117 1 1461 133 5 5 chr9 16398617 16398828 -101463799 + THE1B LTR MaLR 154 364 0 * 1885 176 9 3 chr9 16398828 16399145 -101463482 - MLT2C2 LTR ERVL -145 319 1 1433 212 24 14 chr9 16399149 16399441 -101463186 + AluJb SINE Alu 1 295 -17 428 119 179 0 chr9 16399466 16399550 -101463077 - L1MD2 LINE L1 -549 5617 5519 566 159 166 53 chr9 16399649 16399800 -101462827 - MER34C LTR ERV1 0 585 418 697 84 11 0 chr9 16399900 16399995 -101462632 - AluS SINE Alu -216 96 1 508 86 0 0 chr9 16399995 16400064 -101462563 - AluSg SINE Alu -9 300 232 1316 64 0 13 chr9 16400064 16400221 -101462406 - AluSg SINE Alu -155 155 1 2144 119 0 10 chr9 16400221 16400515 -101462112 - AluSx SINE Alu -21 291 1 263 139 0 89 chr9 16400521 16400600 -101462027 + MER106B DNA MER1_type 834 905 -154 2169 129 0 3 chr9 16400772 16401083 -101461544 - AluSx SINE Alu -2 310 1 240 322 70 0 chr9 16401090 16401205 -101461422 - L2 LINE L2 0 3272 3150 385 245 53 0 chr9 16401265 16401359 -101461268 + MER94 DNA DNA 1 99 -35 2353 92 3 19 chr9 16401637 16401953 -101460674 - AluSq SINE Alu -2 311 1 407 230 97 118 chr9 16403381 16403720 -101458907 - L2 LINE L2 -37 3235 2904 409 139 76 0 chr9 16403768 16403844 -101458783 - MLT2B2 LTR ERVL -13 502 421 2492 132 6 3 chr9 16403844 16404207 -101458420 + THE1B LTR MaLR 1 364 0 * 2765 184 6 24 chr9 16404207 16404691 -101457936 - MLT2B3 LTR ERVL -79 475 1 402 270 20 40 chr9 16405121 16405269 -101457358 + MIR3 SINE MIR 46 190 -18 810 183 0 107 chr9 16405537 16405734 -101456893 - AluJb SINE Alu 0 312 137 2264 108 0 16 chr9 16405760 16406076 -101456551 + AluSq SINE Alu 1 311 -2 501 162 121 10 chr9 16406081 16406180 -101456447 + MER2 DNA MER2_type 235 344 -1 2771 66 3 0 chr9 16406311 16406660 -101455967 - L1PA8 LINE L1 -77 6095 5746 516 62 0 49 chr9 16406666 16406747 -101455880 + L1PA8 LINE L1 6095 6171 -1 2433 95 0 0 chr9 16406782 16407088 -101455539 - AluSq SINE Alu -7 306 1 1344 87 0 22 chr9 16407466 16407651 -101454976 - MER34C LTR ERV1 -361 224 44 314 193 18 0 chr9 16408028 16408085 -101454542 - MLT2B2 LTR ERVL -263 252 195 192 40 0 0 chr9 16408658 16408683 -101453944 + (TC)n Simple_repeat Simple_repeat 2 26 0 226 298 29 19 chr9 16408889 16408993 -101453634 + CT-rich Low_complexity Low_complexity 2 106 0 372 134 0 45 chr9 16409055 16409122 -101453505 + MER4D LTR ERV1 1 64 -808 * 708 110 46 0 chr9 16409119 16409228 -101453399 + MER4E LTR ERV1 653 766 0 5837 130 65 67 chr9 16409234 16409446 -101453181 + MER4E-int LTR ERV1 22 233 -6525 2222 82 3 10 chr9 16409446 16409737 -101452890 - AluY SINE Alu -22 289 1 5837 130 65 67 chr9 16409737 16410511 -101452116 + MER4E-int LTR ERV1 233 1008 -5750 767 186 0 0 chr9 16410511 16410635 -101451992 - FLAM_C SINE Alu -9 124 1 5837 130 65 67 chr9 16410635 16410775 -101451852 + MER4E-int LTR ERV1 1008 1147 -5611 342 0 0 0 chr9 16410775 16410813 -101451814 + (TG)n Simple_repeat Simple_repeat 2 39 0 1188 183 56 37 chr9 16410813 16411222 -101451405 + MER4E-int LTR ERV1 1161 1673 -4925 2042 128 3 7 chr9 16411241 16411538 -101451089 + AluSc SINE Alu 1 296 -13 10196 127 18 13 chr9 16411557 16412916 -101449711 + L1PBa LINE L1 1 1371 -5492 2288 119 0 0 chr9 16412916 16413218 -101449409 - AluSg SINE Alu -8 302 1 10196 127 18 13 chr9 16413218 16413438 -101449189 + L1PBa LINE L1 1371 1588 -5275 2996 89 49 2 chr9 16413464 16413911 -101448716 + L1PBa LINE L1 2076 2543 -4320 747 295 165 24 chr9 16414207 16414661 -101447966 - LTR33 LTR ERVL -3 518 1 219 36 0 0 chr9 16414768 16414796 -101447831 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 1963 144 14 0 chr9 16414796 16415081 -101447546 - AluJb SINE Alu -23 289 1 2325 110 0 0 chr9 16415316 16415626 -101447001 + AluSg SINE Alu 1 310 0 1541 161 89 18 chr9 16415989 16416269 -101446358 + AluJo SINE Alu 1 300 -12 204 182 0 0 chr9 16416801 16416845 -101445782 + CT-rich Low_complexity Low_complexity 2 45 0 992 205 162 34 chr9 16416927 16416958 -101445669 - L1ME1 LINE L1 -4 6162 6136 1725 98 87 34 chr9 16416958 16417247 -101445380 - AluSg SINE Alu 0 303 1 1752 146 7 26 chr9 16417250 16417552 -101445075 - AluJo SINE Alu -16 296 1 992 205 162 34 chr9 16417552 16417866 -101444761 - L1ME1 LINE L1 -31 6135 5767 2300 63 0 37 chr9 16417891 16418190 -101444437 + AluY SINE Alu 1 288 -23 399 237 0 0 chr9 16418190 16418199 -101444428 + (TA)n Simple_repeat Simple_repeat 2 10 -100 2927 3 0 0 chr9 16418199 16418506 -101444121 + AluYb8 SINE Alu 1 307 -11 399 237 0 0 chr9 16418506 16418605 -101444022 + (TA)n Simple_repeat Simple_repeat 9 110 0 1897 127 9 50 chr9 16418613 16418760 -101443867 + AluJo SINE Alu 1 152 -160 1757 133 37 20 chr9 16418760 16419054 -101443573 + AluSx SINE Alu 1 299 -13 1897 127 9 50 chr9 16419054 16419229 -101443398 + AluJo SINE Alu 152 310 -2 3989 232 93 28 chr9 16419229 16419611 -101443016 - L1ME1 LINE L1 -383 5781 5425 2334 101 0 13 chr9 16419611 16419917 -101442710 + AluSg SINE Alu 1 302 -8 3989 232 93 28 chr9 16419917 16420356 -101442271 - L1ME1 LINE L1 -739 5425 5016 2463 83 3 3 chr9 16420356 16420668 -101441959 + AluSp SINE Alu 1 312 -1 3989 232 93 28 chr9 16420668 16421524 -101441103 - L1ME1 LINE L1 -1148 5016 3981 1533 190 17 17 chr9 16421528 16421817 -101440810 + AluJb SINE Alu 3 291 -21 521 45 0 0 chr9 16421820 16421887 -101440740 + AluY SINE Alu 2 68 -241 7489 212 18 15 chr9 16421988 16422083 -101440544 + L1PB1 LINE L1 2241 2334 -3812 2330 107 0 7 chr9 16422083 16422391 -101440236 - AluY SINE Alu -5 306 1 7489 212 18 15 chr9 16422391 16423223 -101439404 + L1PB1 LINE L1 2334 3178 -2968 194 0 39 0 chr9 16423223 16423249 -101439378 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7489 212 18 15 chr9 16423249 16424034 -101438593 + L1PB1 LINE L1 3178 3959 -2187 2384 62 0 0 chr9 16424035 16424309 -101438318 + AluSg SINE Alu 1 274 -36 3951 167 8 1 chr9 16424311 16425567 -101437060 + L1PB1 LINE L1 4526 5791 -360 570 83 68 0 chr9 16425576 16425709 -101436918 + (TA)n Simple_repeat Simple_repeat 1 142 0 2465 105 5 14 chr9 16425716 16426087 -101436540 + L1PB1 LINE L1 5783 6150 -1 2006 139 21 68 chr9 16426247 16426402 -101436225 + MLT1A1 LTR MaLR 1 162 -203 1552 148 112 0 chr9 16426402 16426680 -101435947 + AluJo SINE Alu 1 309 -3 2006 139 21 68 chr9 16426680 16426905 -101435722 + MLT1A1 LTR MaLR 162 363 -2 2286 110 7 0 chr9 16427561 16427869 -101434758 - AluSg SINE Alu 0 310 1 6682 153 47 79 chr9 16427932 16429302 -101433325 - SVA Other Other 0 1386 61 21 0 0 0 chr9 16429310 16429331 -101433296 + AT_rich Low_complexity Low_complexity 1 21 0 306 153 0 69 chr9 16429351 16429423 -101433204 - L1M4c LINE L1 -4807 1577 1511 252 89 0 44 chr9 16429469 16429514 -101433113 - L1MA6 LINE L1 -4 6296 6254 915 168 25 3 chr9 16429574 16429746 -101432881 - L1P5 LINE L1 -473 5683 5514 5749 70 22 40 chr9 16429752 16430579 -101432048 - SVA Other Other 0 1386 575 23 33 0 0 chr9 16430581 16430611 -101432016 + GC_rich Low_complexity Low_complexity 1 30 0 522 203 68 0 chr9 16430793 16430926 -101431701 - L1M4 LINE L1 -2161 3985 3844 925 201 23 11 chr9 16430926 16431100 -101431527 - AluJb SINE Alu -11 301 126 1870 222 68 17 chr9 16431102 16431693 -101430934 - L1M4 LINE L1 -2652 3494 2874 1838 77 0 0 chr9 16431702 16431923 -101430704 + AluSc SINE Alu 2 222 -87 259 322 76 52 chr9 16432178 16432756 -101429871 + HAL1b LINE L1 54 645 -703 362 306 24 0 chr9 16433221 16433391 -101429236 + L1MC4a LINE L1 2232 2405 -3741 1571 205 7 3 chr9 16433529 16433832 -101428795 + AluJo SINE Alu 1 304 -8 351 224 71 0 chr9 16433832 16433930 -101428697 + L1MC4a LINE L1 3063 3167 -2979 799 222 61 117 chr9 16433930 16434272 -101428355 + L1MC4a LINE L1 5609 5931 -1877 1107 207 204 36 chr9 16434273 16434887 -101427740 + LTR41 LTR ERVL 1 766 -7 793 214 89 77 chr9 16434895 16435245 -101427382 + L1MC4a LINE L1 5936 6289 -1519 207 0 0 0 chr9 16435265 16435288 -101427339 + (T)n Simple_repeat Simple_repeat 1 23 0 404 208 0 0 chr9 16435288 16435360 -101427267 - U6 snRNA snRNA -9 98 27 941 252 56 0 chr9 16435433 16435739 -101426888 + L1MC4a LINE L1 6387 6600 -1208 208 229 21 0 chr9 16436963 16437011 -101425616 + (TCCA)n Simple_repeat Simple_repeat 1 49 0 282 360 48 8 chr9 16437011 16437136 -101425491 - L2 LINE L2 -22 3250 3121 252 0 0 0 chr9 16437310 16437338 -101425289 + (CA)n Simple_repeat Simple_repeat 2 29 0 915 294 20 0 chr9 16437342 16437634 -101424993 + L1MC4a LINE L1 5592 5889 -1919 5600 82 32 55 chr9 16437634 16438520 -101424107 + SVA Other Other 4 868 -518 2109 127 0 3 chr9 16438650 16438941 -101423686 - AluSx SINE Alu -22 290 1 325 193 0 0 chr9 16438954 16439011 -101423616 - FLAM_A SINE Alu 0 133 77 509 164 74 187 chr9 16439019 16439315 -101423312 + Charlie8 DNA MER1_type 59 1415 -1002 229 75 104 119 chr9 16440097 16440164 -101422463 - MLT1K LTR MaLR -1 587 522 378 79 175 0 chr9 16440182 16440245 -101422382 + MER34 LTR ERV1 1 74 -468 25 31 0 0 chr9 16440256 16440288 -101422339 + AT_rich Low_complexity Low_complexity 1 32 0 2376 70 0 0 chr9 16440288 16440572 -101422055 - AluSg SINE Alu -26 284 1 4124 98 52 8 chr9 16440574 16441183 -101421444 + LTR9B LTR ERV1 9 644 0 3265 126 2 4 chr9 16441183 16441656 -101420971 + MER34 LTR ERV1 71 542 0 325 252 28 37 chr9 16441856 16441963 -101420664 - MLT1K LTR MaLR -325 263 158 1464 145 9 5 chr9 16442066 16442287 -101420340 + AluJb SINE Alu 1 222 -90 738 50 110 0 chr9 16442287 16442387 -101420240 - LTR7 LTR ERV1 0 450 340 2429 89 0 0 chr9 16442404 16442706 -101419921 - AluSg SINE Alu -8 302 1 2155 132 0 0 chr9 16442851 16443147 -101419480 - AluSq SINE Alu -17 296 1 3289 201 68 15 chr9 16443147 16443824 -101418803 - L1M4 LINE L1 -946 5436 4709 2398 89 0 3 chr9 16443824 16444128 -101418499 - AluSp SINE Alu -10 303 1 3289 201 68 15 chr9 16444128 16444246 -101418381 - L1M4 LINE L1 -1673 4709 4599 2141 110 10 0 chr9 16444246 16444536 -101418091 - AluSx SINE Alu -19 293 1 3229 204 113 96 chr9 16444536 16446009 -101416618 - L1M4 LINE L1 -2170 4212 2715 1365 211 0 4 chr9 16446009 16446275 -101416352 - AluJb SINE Alu -8 304 40 288 266 28 9 chr9 16446275 16446384 -101416243 - L1M4 LINE L1 -3657 2725 2615 654 204 18 0 chr9 16446398 16446511 -101416116 - FLAM_A SINE Alu -16 126 12 2164 123 3 0 chr9 16446544 16446837 -101415790 - AluSx SINE Alu -18 294 1 290 211 0 0 chr9 16446886 16446938 -101415689 + Tigger5 DNA MER2_type 4 55 -2268 * 310 221 70 0 chr9 16446930 16447016 -101415611 + Tigger5 DNA MER2_type 2215 2306 -17 1475 190 17 71 chr9 16447018 16447516 -101415111 - L1M4 LINE L1 -4241 2143 1568 465 250 0 39 chr9 16447528 16447632 -101414995 + AluJo SINE Alu 121 220 -92 2314 101 3 0 chr9 16447671 16447967 -101414660 + AluSx SINE Alu 1 297 -15 2190 103 14 0 chr9 16447971 16448262 -101414365 + AluY SINE Alu 3 297 -14 24 0 0 0 chr9 16448262 16448286 -101414341 + AT_rich Low_complexity Low_complexity 1 24 0 1072 90 7 0 chr9 16448289 16448434 -101414193 + Tigger1 DNA MER2_type 1465 1610 -808 1841 143 0 0 chr9 16448473 16448738 -101413889 + AluSx SINE Alu 43 307 -5 1453 175 7 42 chr9 16448749 16449034 -101413593 - AluJo SINE Alu -29 283 9 1956 89 13 73 chr9 16449042 16449279 -101413348 + Tigger1 DNA MER2_type 1607 1857 -561 7080 79 42 8 chr9 16449279 16450311 -101412316 - L1PA10 LINE L1 0 6168 5133 829 122 0 0 chr9 16450311 16450418 -101412209 - U6 snRNA snRNA 0 107 1 1956 89 13 73 chr9 16450418 16450492 -101412135 + Tigger1 DNA MER2_type 1855 1900 -518 937 192 0 0 chr9 16450495 16450662 -101411965 - AluJb SINE Alu -6 306 140 1743 179 0 3 chr9 16450663 16450948 -101411679 - AluJb SINE Alu -20 292 9 1015 152 0 0 chr9 16450955 16451106 -101411521 + Tigger1 DNA MER2_type 2268 2418 0 2100 169 68 3 chr9 16451108 16451493 -101411134 + L1MC1 LINE L1 5924 6333 0 1967 161 3 0 chr9 16451632 16451937 -101410690 + AluSp SINE Alu 1 306 -7 771 186 0 16 chr9 16451940 16452069 -101410558 - FLAM_A SINE Alu -6 127 1 22 56 0 0 chr9 16452069 16452105 -101410522 + AT_rich Low_complexity Low_complexity 1 36 0 232 216 149 14 chr9 16452140 16452214 -101410413 + MLT1L LTR MaLR 2 85 -530 327 197 16 0 chr9 16452286 16452347 -101410280 + MLT1J LTR MaLR 112 173 -338 351 259 47 59 chr9 16452364 16452521 -101410106 + MLT1L LTR MaLR 439 593 -22 632 186 107 79 chr9 16452521 16452698 -101409929 + MER63A DNA MER1_type 1 182 -28 2322 102 7 0 chr9 16452977 16453152 -101409475 - AluSc SINE Alu -3 306 127 233 0 62 0 chr9 16453152 16453184 -101409443 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2322 102 7 0 chr9 16453184 16453312 -101409315 - AluSc SINE Alu -182 127 1 1600 199 16 7 chr9 16453358 16453665 -101408962 + AluJb SINE Alu 1 310 -2 1040 248 51 0 chr9 16453681 16453935 -101408692 + MER110 LTR ERV1 225 491 0 402 297 61 47 chr9 16453935 16454147 -101408480 - L1ME LINE L1 -513 5608 5394 856 192 17 47 chr9 16454371 16454543 -101408084 - FRAM SINE Alu -17 159 1 720 238 28 14 chr9 16454543 16454757 -101407870 + Charlie2a DNA MER1_type 672 888 -1974 473 160 24 0 chr9 16454761 16454849 -101407778 + MER2 DNA MER2_type 1 89 -150 234 229 42 0 chr9 16454956 16455004 -101407623 + MER2 DNA MER2_type 296 345 0 626 175 100 33 chr9 16455073 16455193 -101407434 + FLAM_A SINE Alu 8 135 -7 1117 184 88 102 chr9 16455193 16455535 -101407092 + Charlie2 DNA MER1_type 986 1331 -1531 2300 112 0 0 chr9 16455535 16455831 -101406796 - AluSx SINE Alu -16 296 1 1117 184 88 102 chr9 16455831 16456186 -101406441 + Charlie2 DNA MER1_type 1331 2809 -53 318 133 33 0 chr9 16456653 16456713 -101405914 + L1MD3 LINE L1 7057 7118 -877 246 226 11 118 chr9 16456715 16456808 -101405819 + MLT1F1 LTR MaLR 35 117 -450 1428 212 19 134 chr9 16456808 16457071 -101405556 + L1MD3 LINE L1 7182 7474 -521 829 110 17 0 chr9 16457071 16457189 -101405438 + AluSg/x SINE Alu 186 305 -5 1428 212 19 134 chr9 16457189 16457552 -101405075 + L1MD3 LINE L1 7474 7995 0 1669 151 43 0 chr9 16457591 16457870 -101404757 + AluJo SINE Alu 3 293 -19 5304 126 66 7 chr9 16458154 16459014 -101403613 + L1MC1 LINE L1 5423 6333 0 1575 192 0 28 chr9 16459041 16459404 -101403223 + AluJo SINE Alu 1 312 0 586 269 76 0 chr9 16459604 16459775 -101402852 - MIR SINE MIR -58 204 21 458 248 70 13 chr9 16460043 16460200 -101402427 - MER103 DNA DNA 0 166 1 2212 118 0 7 chr9 16460628 16460932 -101401695 + AluSx SINE Alu 5 306 -6 2112 125 0 35 chr9 16460932 16461245 -101401382 + AluSx SINE Alu 1 302 -10 2203 93 0 3 chr9 16462028 16462318 -101400309 - AluSg SINE Alu -20 290 2 406 211 57 52 chr9 16462703 16462853 -101399774 + MIR SINE MIR 18 162 -46 272 118 0 20 chr9 16463099 16463150 -101399477 + (TCCCC)n Simple_repeat Simple_repeat 4 53 0 471 245 231 0 chr9 16463553 16463700 -101398927 - MER5A DNA MER1_type 0 189 9 200 186 0 51 chr9 16465874 16465933 -101396694 + C-rich Low_complexity Low_complexity 4 59 0 3994 195 51 56 chr9 16466825 16467808 -101394819 - L1MD1 LINE L1 -12 6230 5253 189 0 0 0 chr9 16467848 16467869 -101394758 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 1854 100 77 0 chr9 16467869 16468129 -101394498 - AluSx SINE Alu -32 280 1 3641 123 10 0 chr9 16468483 16468988 -101393639 + MER75 DNA T2_type 5 514 0 1536 252 28 9 chr9 16469064 16469493 -101393134 - L1MD1 LINE L1 -858 5288 4852 1770 194 9 13 chr9 16469530 16469845 -101392782 - 7SLRNA srpRNA srpRNA -6 314 1 186 167 44 9 chr9 16469873 16469987 -101392640 + (TA)n Simple_repeat Simple_repeat 1 118 0 792 216 92 79 chr9 16470003 16470382 -101392245 - L1MD1 LINE L1 -1564 4582 4199 472 276 17 6 chr9 16470385 16470559 -101392068 - L1MD1 LINE L1 -3357 2789 2614 772 176 0 29 chr9 16470565 16470701 -101391926 - FLAM_C SINE Alu -1 132 1 22 0 0 0 chr9 16470716 16470738 -101391889 + GC_rich Low_complexity Low_complexity 1 22 0 592 105 0 23 chr9 16471651 16471737 -101390890 - AluSg/x SINE Alu -21 289 206 815 78 0 0 chr9 16471837 16471940 -101390687 + AluSg/x SINE Alu 198 300 -10 1189 285 60 70 chr9 16472164 16472782 -101389845 - MER89-int LTR ERV1 -426 4221 3610 658 158 71 24 chr9 16472785 16472912 -101389715 + FLAM_C SINE Alu 1 133 0 2251 80 0 11 chr9 16472945 16473254 -101389373 + AluY SINE Alu 1 306 0 322 341 71 0 chr9 16473278 16473404 -101389223 - MER89-int LTR ERV1 -1044 3603 3469 1125 239 64 98 chr9 16473414 16473975 -101388652 - MER77 LTR ERV1 -8 597 138 1724 174 0 27 chr9 16474082 16474417 -101388210 + AluJb SINE Alu 1 312 0 2420 90 0 19 chr9 16474424 16474736 -101387891 + AluSx SINE Alu 1 306 -6 331 208 75 38 chr9 16474822 16474928 -101387699 - MER89-int LTR ERV1 -1218 3429 3320 841 253 64 67 chr9 16474977 16475365 -101387262 - MER89-int LTR ERV1 -1319 3328 2942 347 316 101 6 chr9 16475421 16475589 -101387038 - MER89-int LTR ERV1 -1640 5161 4978 26 0 0 0 chr9 16475992 16476018 -101386609 + AT_rich Low_complexity Low_complexity 1 26 0 550 118 18 18 chr9 16476046 16476156 -101386471 + L1MDb LINE L1 1081 1190 -5219 477 195 20 141 chr9 16476308 16476558 -101386069 - LTR50 LTR ERVL 0 795 556 2153 84 27 3 chr9 16476574 16476872 -101385755 - AluSq SINE Alu -8 305 1 343 298 33 33 chr9 16477171 16477322 -101385305 - LTR41 LTR ERVL -622 151 1 24 53 0 0 chr9 16477344 16477382 -101385245 + AT_rich Low_complexity Low_complexity 1 38 0 2227 100 0 7 chr9 16477410 16477709 -101384918 - AluSx SINE Alu -15 297 1 194 250 167 12 chr9 16478802 16478886 -101383741 + MIR3 SINE MIR 85 181 -27 1934 144 34 0 chr9 16480663 16480955 -101381672 - AluSg SINE Alu -8 302 1 572 254 113 11 chr9 16480958 16481143 -101381484 + MER113 DNA MER1_type? 232 435 -86 745 229 201 14 chr9 16481285 16481569 -101381058 - MER46C DNA MER2_type -1 337 1 21 0 0 0 chr9 16481648 16481669 -101380958 + AT_rich Low_complexity Low_complexity 1 21 0 561 218 259 14 chr9 16482570 16482790 -101379837 - L1MB8 LINE L1 -1 6177 5904 717 226 37 47 chr9 16483010 16483086 -101379541 + MER5A DNA MER1_type 2 77 -112 1620 158 90 0 chr9 16483086 16483364 -101379263 + AluJb SINE Alu 1 303 -9 717 226 37 47 chr9 16483364 16483477 -101379150 + MER5A DNA MER1_type 77 189 0 2295 62 0 0 chr9 16483565 16483840 -101378787 - AluY SINE Alu -9 302 28 2189 127 0 0 chr9 16484278 16484577 -101378050 + AluSg SINE Alu 1 299 -11 1323 169 54 65 chr9 16484649 16484928 -101377699 - AluJo SINE Alu -16 296 21 2129 134 3 0 chr9 16484931 16485238 -101377389 - AluSx SINE Alu -4 308 1 297 273 71 71 chr9 16485547 16485701 -101376926 + L2 LINE L2 2412 2565 -749 692 187 15 60 chr9 16485750 16485884 -101376743 + FLAM_A SINE Alu 1 128 -5 1179 159 48 5 chr9 16485929 16486136 -101376491 - MER2 DNA MER2_type 0 345 130 1664 123 67 21 chr9 16486140 16486424 -101376203 - MER1B DNA MER1_type -40 299 3 490 163 139 54 chr9 16486425 16486455 -101376172 - MER2 DNA MER2_type -205 140 114 243 0 0 0 chr9 16486455 16486482 -101376145 + (TA)n Simple_repeat Simple_repeat 1 27 0 490 163 139 54 chr9 16486482 16486580 -101376047 - MER2 DNA MER2_type -231 114 1 353 268 43 73 chr9 16486583 16486747 -101375880 + L2 LINE L2 2684 2842 -472 314 239 177 0 chr9 16486937 16487050 -101375577 + L2 LINE L2 3176 3308 -5 524 236 91 30 chr9 16487142 16487307 -101375320 + MIR SINE MIR 53 227 -35 2099 98 3 20 chr9 16487841 16488138 -101374489 - AluY SINE Alu -19 292 1 30 0 0 0 chr9 16488233 16488263 -101374364 + AT_rich Low_complexity Low_complexity 1 30 0 2208 110 0 7 chr9 16488431 16488731 -101373896 - AluSx SINE Alu -14 298 1 332 265 94 17 chr9 16489169 16489286 -101373341 + MIR3 SINE MIR 66 191 -17 2063 133 0 19 chr9 16489879 16490195 -101372432 - AluSx SINE Alu -2 310 1 2505 169 88 56 chr9 16490552 16490698 -101371929 - L1MB8 LINE L1 -118 6060 5920 2332 94 0 10 chr9 16490698 16490997 -101371630 + AluSg SINE Alu 1 296 -14 2505 169 88 56 chr9 16490997 16491495 -101371132 - L1MB8 LINE L1 -258 5920 5395 3949 201 94 14 chr9 16492015 16492962 -101369665 + Tigger6a DNA MER2_type 2 1024 -59 21 0 0 0 chr9 16493083 16493104 -101369523 + AT_rich Low_complexity Low_complexity 1 21 0 263 250 28 0 chr9 16493147 16493219 -101369408 - HAL1 LINE L1 -2193 314 241 345 270 184 13 chr9 16493227 16493379 -101369248 - HAL1 LINE L1 -2328 179 2 2256 107 7 0 chr9 16493729 16494038 -101368589 - AluSp SINE Alu -2 311 1 1727 139 85 26 chr9 16494420 16494772 -101367855 + THE1C LTR MaLR 1 373 -2 9406 119 68 8 chr9 16494774 16496265 -101366362 + THE1C-int LTR MaLR 1 1580 0 1813 119 91 26 chr9 16496265 16496617 -101366010 + THE1C LTR MaLR 1 375 0 357 274 0 0 chr9 16496672 16496756 -101365871 + Tigger5 DNA MER2_type 2240 2323 0 1525 210 49 10 chr9 16496782 16497376 -101365251 - MER82 DNA MER2_type 0 653 15 2484 82 0 0 chr9 16497617 16497921 -101364706 - AluSx SINE Alu -7 305 2 402 55 55 0 chr9 16497925 16497980 -101364647 - L1MB2 LINE L1 -46 6125 6068 2212 117 3 3 chr9 16498691 16498998 -101363629 - AluSq SINE Alu -6 307 1 2344 68 3 0 chr9 16499292 16499584 -101363043 - AluY SINE Alu -18 293 1 963 70 0 0 chr9 16499584 16499699 -101362928 - AluY SINE Alu -176 135 21 2079 125 3 10 chr9 16499964 16500275 -101362352 - AluSg SINE Alu -1 309 1 194 321 149 30 chr9 16500463 16500597 -101362030 + L2 LINE L2 3116 3265 -7 2031 131 0 22 chr9 16500697 16501011 -101361616 - AluSx SINE Alu -5 307 1 388 124 103 62 chr9 16501112 16501209 -101361418 - AluJb SINE Alu 0 302 202 763 135 16 0 chr9 16501209 16501335 -101361292 + AluJo/FRAM SINE Alu 179 306 -6 185 254 51 17 chr9 16501902 16501961 -101360666 + MIR3 SINE MIR 140 200 -8 370 225 106 56 chr9 16502502 16502644 -101359983 + MIR SINE MIR 113 261 -1 1085 194 61 68 chr9 16503171 16503332 -101359295 - AluJo SINE Alu -23 289 129 2158 111 3 35 chr9 16503332 16503511 -101359116 - AluSx SINE Alu -7 305 139 1981 128 30 7 chr9 16503511 16503815 -101358812 - AluSx SINE Alu -1 311 1 2158 111 3 35 chr9 16503815 16503950 -101358677 - AluSx SINE Alu -173 139 1 1085 194 61 68 chr9 16503950 16504066 -101358561 - AluJo SINE Alu -183 129 14 2217 114 0 13 chr9 16504115 16504421 -101358206 - AluSx SINE Alu -10 302 1 620 147 0 0 chr9 16504424 16504519 -101358108 - AluSg SINE Alu -179 131 37 206 324 42 0 chr9 16504640 16504711 -101357916 - L2 LINE L2 -71 3242 3169 1873 132 42 17 chr9 16506568 16506856 -101355771 - AluSg SINE Alu -15 295 1 248 267 57 48 chr9 16507002 16507107 -101355520 - MER5B DNA MER1_type -5 173 68 1908 152 13 3 chr9 16507324 16507627 -101355000 - AluSx SINE Alu -6 306 1 1588 138 54 20 chr9 16509996 16510292 -101352335 - AluJo SINE Alu -6 306 1 21 57 0 0 chr9 16510346 16510381 -101352246 + AT_rich Low_complexity Low_complexity 1 35 0 1074 141 22 0 chr9 16510747 16510931 -101351696 + L1MA8 LINE L1 6094 6281 -10 384 248 120 8 chr9 16512582 16512715 -101349912 - L1MC/D LINE L1 -2114 5694 5547 342 257 44 26 chr9 16513080 16513193 -101349434 + MIR3 SINE MIR 85 199 -9 1987 148 23 0 chr9 16514218 16514523 -101348104 - AluSx SINE Alu 0 312 1 216 0 0 0 chr9 16517190 16517214 -101345413 + (T)n Simple_repeat Simple_repeat 1 24 0 28 29 0 0 chr9 16517478 16517513 -101345114 + AT_rich Low_complexity Low_complexity 1 35 0 1960 128 153 8 chr9 16519576 16519967 -101342660 + Tigger4(Zombi) DNA MER2_type 1892 2339 -392 2221 100 3 10 chr9 16519968 16520269 -101342358 - AluSp SINE Alu -12 301 3 323 210 170 62 chr9 16520411 16520635 -101341992 - L1MC5 LINE L1 -44 7917 7670 2126 115 10 3 chr9 16521707 16522012 -101340615 - AluSq SINE Alu -6 307 1 306 0 0 0 chr9 16524582 16524616 -101338011 + (CACCC)n Simple_repeat Simple_repeat 3 36 0 1371 90 0 0 chr9 16524717 16524894 -101337733 + AluSg/x SINE Alu 133 309 -3 1704 170 0 7 chr9 16526681 16526970 -101335657 + AluJb SINE Alu 2 288 -24 2273 102 0 0 chr9 16527451 16527744 -101334883 + AluSq SINE Alu 1 293 -20 333 234 86 16 chr9 16527907 16528035 -101334592 + L1M4 LINE L1 5155 5291 -855 953 159 84 44 chr9 16529111 16529338 -101333289 - MER46A DNA MER2_type 0 236 1 375 151 151 23 chr9 16529375 16529461 -101333166 - FLAM_C SINE Alu 0 133 37 307 279 107 0 chr9 16529662 16529784 -101332843 + MER103 DNA DNA 32 166 0 1887 173 0 0 chr9 16530593 16530893 -101331734 - AluJo SINE Alu -12 300 1 323 360 50 14 chr9 16531123 16531262 -101331365 + MIR3 SINE MIR 58 201 -7 1802 184 0 0 chr9 16531441 16531735 -101330892 + AluJo SINE Alu 4 297 -15 2270 102 0 13 chr9 16531896 16532032 -101330595 + AluSx SINE Alu 1 137 -175 2372 88 3 0 chr9 16532032 16532340 -101330287 + AluSp SINE Alu 1 309 -4 2270 102 0 13 chr9 16532340 16532508 -101330119 + AluSx SINE Alu 137 301 -11 2088 132 7 0 chr9 16532626 16532921 -101329706 - AluSx SINE Alu -15 297 1 728 262 134 61 chr9 16532943 16533250 -101329377 - HAL1 LINE L1 -10 2497 2214 2303 80 10 0 chr9 16533250 16533550 -101329077 - AluY SINE Alu -8 303 1 728 262 134 61 chr9 16533550 16533897 -101328730 - HAL1 LINE L1 -293 2214 1654 1993 149 30 0 chr9 16533947 16534248 -101328379 - AluJb SINE Alu -1 311 2 531 200 35 41 chr9 16535472 16535588 -101327039 + Charlie1 DNA MER1_type 2618 2734 -27 2244 88 10 0 chr9 16535588 16535883 -101326744 + AluSp SINE Alu 1 298 -15 531 200 35 41 chr9 16535883 16535911 -101326716 + Charlie1 DNA MER1_type 2734 2761 0 1808 154 4 0 chr9 16535944 16536217 -101326410 + AluSx SINE Alu 2 275 -37 910 168 0 13 chr9 16536483 16536638 -101325989 - FAM SINE Alu -9 40 1 424 252 204 7 chr9 16537423 16537570 -101325057 + MER5B DNA MER1_type 2 177 -1 495 257 41 35 chr9 16537613 16537784 -101324843 + MIR SINE MIR 36 207 -55 293 296 58 47 chr9 16537888 16538060 -101324567 + MIR SINE MIR 40 213 -49 2166 98 0 0 chr9 16538364 16538641 -101323986 + AluSp SINE Alu 30 306 -7 261 0 0 0 chr9 16538641 16538670 -101323957 + (TA)n Simple_repeat Simple_repeat 2 30 0 2011 122 23 7 chr9 16539095 16539398 -101323229 + AluSx SINE Alu 1 308 -4 213 399 101 4 chr9 16539697 16539925 -101322702 - L2 LINE L2 -215 3057 2808 197 305 24 0 chr9 16540497 16540579 -101322048 - L2 LINE L2 -1306 2008 1925 563 92 0 0 chr9 16540607 16540694 -101321933 + Alu SINE Alu 223 309 0 220 340 21 10 chr9 16540745 16540842 -101321785 - L2 LINE L2 -1476 1838 1741 1013 232 60 45 chr9 16541306 16541642 -101320985 + MER74A LTR ERVL 155 495 -63 1815 178 34 0 chr9 16541701 16541994 -101320633 + AluJo SINE Alu 3 305 -7 1527 187 56 4 chr9 16542272 16542540 -101320087 - AluJb SINE Alu -30 282 1 1828 164 0 7 chr9 16543113 16543394 -101319233 - AluJo SINE Alu -31 281 3 217 298 184 18 chr9 16543657 16543771 -101318856 + MIR SINE MIR 2 134 -128 271 283 212 26 chr9 16543963 16544076 -101318551 - MIR SINE MIR -119 143 10 331 269 97 68 chr9 16544192 16544500 -101318127 + L1M4c LINE L1 40 356 -6028 486 303 0 0 chr9 16544617 16544749 -101317878 + L1M4c LINE L1 554 685 -5595 504 235 40 0 chr9 16544780 16544929 -101317698 + L1M4c LINE L1 773 927 -5353 6023 74 25 13 chr9 16544987 16545843 -101316784 + SVA Other Other 3 868 -518 4379 151 54 13 chr9 16546035 16546571 -101316056 + L1MB4 LINE L1 5327 5909 -271 2201 112 7 0 chr9 16546571 16546867 -101315760 + AluSx SINE Alu 1 298 -14 4379 151 54 13 chr9 16546867 16547149 -101315478 + L1MB4 LINE L1 5909 6178 -2 4533 220 64 59 chr9 16547808 16549224 -101313403 - L1MC4a LINE L1 0 7808 6387 427 194 0 0 chr9 16549297 16549369 -101313258 + U6 snRNA snRNA 27 98 -9 207 0 0 0 chr9 16549369 16549392 -101313235 + (A)n Simple_repeat Simple_repeat 1 23 0 715 243 86 74 chr9 16549412 16549762 -101312865 - L1MC4a LINE L1 -1519 6289 5936 1688 118 0 0 chr9 16549962 16550191 -101312436 - AluSx SINE Alu -30 282 54 1870 131 11 18 chr9 16550426 16550737 -101311890 + AluSx SINE Alu 1 309 0 23 0 0 0 chr9 16551036 16551059 -101311568 + AT_rich Low_complexity Low_complexity 1 23 0 360 342 158 25 chr9 16551527 16551920 -101310707 - L2 LINE L2 -1 3271 2777 1946 128 30 3 chr9 16551920 16552216 -101310411 + AluSp SINE Alu 1 304 -9 360 342 158 25 chr9 16552216 16552396 -101310231 - L2 LINE L2 -495 2777 2622 1768 128 10 10 chr9 16552556 16552844 -101309783 + AluSx SINE Alu 1 288 -24 186 43 0 0 chr9 16552844 16552867 -101309760 + (CATAA)n Simple_repeat Simple_repeat 2 24 0 1027 195 132 3 chr9 16553374 16553661 -101308966 + MER5C DNA MER1_type 1 324 0 344 303 59 38 chr9 16553741 16554028 -101308599 + L1MC4 LINE L1 7720 8012 -30 23 54 0 0 chr9 16555270 16555307 -101307320 + GC_rich Low_complexity Low_complexity 1 37 0 1195 184 117 11 chr9 16555962 16556245 -101306382 - L1MB8 LINE L1 -12 6166 5854 2078 217 132 18 chr9 16556251 16556902 -101305725 + MER50 LTR ERV1 10 734 0 879 136 212 0 chr9 16556903 16557087 -101305540 - L1MB8 LINE L1 -318 5856 5634 355 191 0 0 chr9 16557090 16557153 -101305474 - MER2 DNA MER2_type 0 345 283 * 595 254 41 18 chr9 16557129 16557298 -101305329 - MER8 DNA MER2_type -60 179 7 1153 192 103 7 chr9 16557308 16557599 -101305028 - L1MB8 LINE L1 -566 5618 5300 1884 128 0 7 chr9 16557634 16557908 -101304719 - AluSp SINE Alu -7 306 35 402 297 61 47 chr9 16558353 16558565 -101304062 + L1ME LINE L1 5394 5608 -513 1040 248 51 0 chr9 16558565 16558819 -101303808 - MER110 LTR ERV1 0 491 225 1600 199 16 7 chr9 16558835 16559142 -101303485 - AluJb SINE Alu -2 310 1 2322 102 7 0 chr9 16559188 16559316 -101303311 + AluSc SINE Alu 1 127 -182 212 31 62 0 chr9 16559316 16559348 -101303279 + A-rich Low_complexity Low_complexity 2 35 0 2322 102 7 0 chr9 16559348 16559523 -101303104 + AluSc SINE Alu 127 306 -3 632 186 107 79 chr9 16559802 16559979 -101302648 - MER63A DNA MER1_type -28 182 1 351 259 47 59 chr9 16559979 16560136 -101302491 - MLT1L LTR MaLR -22 593 439 327 197 16 0 chr9 16560153 16560214 -101302413 - MLT1J LTR MaLR -338 173 112 232 216 149 14 chr9 16560286 16560360 -101302267 - MLT1L LTR MaLR -530 85 2 728 194 0 16 chr9 16560430 16560559 -101302068 + FLAM_A SINE Alu 1 127 -6 1967 161 3 0 chr9 16560562 16560867 -101301760 - AluSp SINE Alu -7 306 1 2100 169 68 3 chr9 16561006 16561391 -101301236 - L1MC1 LINE L1 0 6333 5924 1015 152 0 0 chr9 16561393 16561544 -101301083 - Tigger1 DNA MER2_type 0 2418 2268 1743 179 0 3 chr9 16561551 16561836 -101300791 + AluJb SINE Alu 9 292 -20 937 192 0 0 chr9 16561837 16562004 -101300623 + AluJb SINE Alu 140 306 -6 1956 89 13 73 chr9 16562007 16562081 -101300546 - Tigger1 DNA MER2_type -518 1900 1823 829 122 0 0 chr9 16562081 16562188 -101300439 + U6 snRNA snRNA 1 107 0 7080 79 8 9 chr9 16562188 16563220 -101299407 + L1PA10 LINE L1 5133 6168 0 1956 89 13 73 chr9 16563220 16563457 -101299170 - Tigger1 DNA MER2_type -593 1825 1607 1453 175 7 42 chr9 16563465 16563750 -101298877 + AluJo SINE Alu 9 283 -29 1841 143 0 0 chr9 16563761 16564026 -101298601 - AluSx SINE Alu -5 307 43 1072 90 7 0 chr9 16564064 16564209 -101298418 - Tigger1 DNA MER2_type -808 1610 1465 24 0 0 0 chr9 16564212 16564236 -101298391 + AT_rich Low_complexity Low_complexity 1 24 0 2190 103 14 0 chr9 16564236 16564527 -101298100 - AluY SINE Alu -14 297 3 2355 104 0 0 chr9 16564531 16564828 -101297799 - AluSx SINE Alu -15 297 1 3123 144 52 8 chr9 16564831 16565365 -101297262 - Tigger1 DNA MER2_type -1239 1179 622 459 217 94 29 chr9 16565365 16565503 -101297124 - AluSg/x SINE Alu -35 275 129 907 107 119 36 chr9 16565503 16565671 -101296956 - Tigger1 DNA MER2_type -1816 602 421 252 0 0 0 chr9 16565672 16565699 -101296928 - MSTD LTR MaLR -369 27 1 204 228 18 18 chr9 16565700 16565757 -101296870 + MIR SINE MIR 200 256 -6 712 161 113 32 chr9 16565758 16565882 -101296745 + AluJb SINE Alu 2 135 -177 1383 44 12 0 chr9 16566331 16566491 -101296136 + L1PA7 LINE L1 5991 6152 -2 22 35 0 0 chr9 16567051 16567080 -101295547 + AT_rich Low_complexity Low_complexity 1 29 0 213 312 144 8 chr9 16567685 16567810 -101294817 + L2 LINE L2 2726 2867 -447 240 381 48 0 chr9 16567959 16568064 -101294563 + L2 LINE L2 3163 3272 0 2577 43 0 7 chr9 16568180 16568482 -101294145 - AluY SINE Alu -11 300 1 1019 144 0 0 chr9 16568501 16568654 -101293973 + AluJb SINE Alu 160 312 0 28 0 0 0 chr9 16568654 16568682 -101293945 + AT_rich Low_complexity Low_complexity 1 28 0 414 0 0 0 chr9 16569240 16569286 -101293341 + (TG)n Simple_repeat Simple_repeat 2 47 0 222 274 113 48 chr9 16570558 16570682 -101291945 + L2 LINE L2 3182 3313 0 2434 51 0 3 chr9 16570993 16571288 -101291339 - AluY SINE Alu -16 295 2 402 343 22 15 chr9 16571445 16571579 -101291048 + MIR3 SINE MIR 53 187 -21 633 238 181 5 chr9 16571708 16571918 -101290709 + MIR SINE MIR 1 247 -15 269 291 12 58 chr9 16572554 16572640 -101289987 + MIR SINE MIR 23 104 -158 24892 47 4 0 chr9 16572655 16576427 -101286200 - L1PA5 LINE L1 -2 6152 2426 33317 60 7 3 chr9 16576528 16580801 -101281826 - L1P LINE L1 -1008 5138 847 719 115 0 0 chr9 16580801 16580897 -101281730 - L1P LINE L1 -6050 96 1 383 310 9 0 chr9 16580908 16581024 -101281603 + MIR SINE MIR 110 226 -36 561 234 72 51 chr9 16581695 16581765 -101280862 - MLT1E LTR MaLR -295 331 264 2133 120 0 3 chr9 16581765 16582065 -101280562 - AluSg SINE Alu -11 299 1 561 234 72 51 chr9 16582065 16582184 -101280443 - MLT1E LTR MaLR -362 264 108 285 217 48 48 chr9 16582693 16582776 -101279851 + MIR SINE MIR 70 152 -110 393 295 124 60 chr9 16582832 16582908 -101279719 + MIR SINE MIR 20 90 -172 2272 100 3 0 chr9 16582908 16583209 -101279418 - AluSp SINE Alu -11 302 1 393 295 124 60 chr9 16583209 16583349 -101279278 + MIR SINE MIR 90 250 -12 2406 61 0 3 chr9 16584318 16584647 -101277980 - AluY SINE Alu 0 328 1 1561 203 0 0 chr9 16585410 16585696 -101276931 + AluJo SINE Alu 5 290 -22 396 184 133 63 chr9 16585772 16585865 -101276762 - L1M4 LINE L1 -1306 4840 4730 1805 182 0 7 chr9 16585865 16586173 -101276454 - AluJb SINE Alu -6 306 1 396 184 133 63 chr9 16586173 16586237 -101276390 - L1M4 LINE L1 -1416 4730 4672 476 248 30 23 chr9 16586250 16586383 -101276244 - L2 LINE L2 0 3313 3180 910 188 134 5 chr9 16586387 16586611 -101276016 + MER110 LTR ERV1 1 253 -238 28 29 0 0 chr9 16587148 16587183 -101275444 + AT_rich Low_complexity Low_complexity 1 35 0 689 160 61 38 chr9 16587187 16587318 -101275309 - AluJo SINE Alu -176 136 3 2512 51 0 0 chr9 16587330 16587625 -101275002 - AluY SINE Alu -16 295 1 634 175 0 33 chr9 16587764 16587884 -101274743 - AluSg/x SINE Alu 0 309 194 1539 153 14 37 chr9 16587951 16588246 -101274381 + AluJb SINE Alu 1 288 -24 180 200 0 0 chr9 16588330 16588375 -101274252 + (TA)n Simple_repeat Simple_repeat 2 46 0 24 53 0 0 chr9 16588796 16588834 -101273793 + AT_rich Low_complexity Low_complexity 1 38 0 2458 50 0 0 chr9 16588834 16589166 -101273461 + AluY SINE Alu 1 332 0 2144 103 0 7 chr9 16589412 16589729 -101272898 + AluSg SINE Alu 1 315 0 298 130 0 37 chr9 16589924 16589978 -101272649 - Alu SINE Alu 0 302 251 9404 85 11 7 chr9 16589980 16591281 -101271346 - L1P LINE L1 -3993 2153 847 735 112 0 0 chr9 16591279 16591377 -101271250 - L1P LINE L1 -6048 98 1 * 383 310 9 0 chr9 16591388 16591504 -101271123 + MIR SINE MIR 110 226 -36 561 234 72 51 chr9 16592175 16592245 -101270382 - MLT1E LTR MaLR -295 331 264 2133 120 0 3 chr9 16592245 16592545 -101270082 - AluSg SINE Alu -11 299 1 561 234 72 51 chr9 16592545 16592664 -101269963 - MLT1E LTR MaLR -362 264 108 285 217 48 48 chr9 16593173 16593256 -101269371 + MIR SINE MIR 70 152 -110 393 295 124 60 chr9 16593312 16593388 -101269239 + MIR SINE MIR 20 90 -172 2272 100 3 0 chr9 16593388 16593689 -101268938 - AluSp SINE Alu -11 302 1 393 295 124 60 chr9 16593689 16593829 -101268798 + MIR SINE MIR 90 250 -12 642 205 186 0 chr9 16595010 16595225 -101267402 + MER5C DNA MER1_type 70 324 0 1286 118 0 27 chr9 16595338 16595524 -101267103 - AluSg/x SINE Alu -9 303 123 641 182 16 8 chr9 16595613 16595734 -101266893 - FLAM_A SINE Alu -11 122 1 3657 196 36 32 chr9 16595804 16596528 -101266099 - L1MB7 LINE L1 -209 5975 5256 1927 161 0 3 chr9 16596528 16596832 -101265795 + AluSx SINE Alu 1 303 -9 3657 196 36 32 chr9 16596832 16597280 -101265347 - L1MB7 LINE L1 -928 5256 4812 1972 114 18 0 chr9 16597280 16597553 -101265074 - AluSg SINE Alu -14 296 19 3657 196 36 32 chr9 16597553 16597912 -101264715 - L1MB7 LINE L1 -1372 4812 4432 1910 155 10 0 chr9 16597912 16598203 -101264424 - AluJo SINE Alu -18 294 1 3657 196 36 32 chr9 16598203 16598279 -101264348 - L1MB7 LINE L1 -1752 4432 4358 2176 110 7 7 chr9 16598373 16598674 -101263953 - AluSp SINE Alu -12 301 1 6403 45 4 32 chr9 16598700 16599536 -101263091 - SVA Other Other 0 1386 575 346 79 175 0 chr9 16600096 16600159 -101262468 + MER34 LTR ERV1 1 74 -468 25 31 0 0 chr9 16600170 16600202 -101262425 + AT_rich Low_complexity Low_complexity 1 32 0 2430 56 0 0 chr9 16600202 16600486 -101262141 - AluSg SINE Alu -26 284 1 4789 224 24 10 chr9 16600487 16601272 -101261355 - L1MB7 LINE L1 -2187 3959 3149 194 0 39 0 chr9 16601272 16601298 -101261329 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4789 224 24 10 chr9 16601298 16601776 -101260851 - L1MB7 LINE L1 -2997 3149 2679 2069 212 50 14 chr9 16601911 16602530 -101260097 + L1MB7 LINE L1 3140 3780 -2366 281 222 81 0 chr9 16602543 16602642 -101259985 - L1M4 LINE L1 -3277 2869 2763 605 205 5 88 chr9 16602650 16602855 -101259772 + L1MB7 LINE L1 3789 3976 -2170 2275 108 0 0 chr9 16602855 16603152 -101259475 + AluSx SINE Alu 1 297 -15 2191 103 14 0 chr9 16603156 16603447 -101259180 + AluY SINE Alu 3 297 -14 24 0 0 0 chr9 16603447 16603471 -101259156 + AT_rich Low_complexity Low_complexity 1 24 0 994 90 7 0 chr9 16603474 16603619 -101259008 + Tigger1 DNA MER2_type 1465 1610 -808 1364 163 18 0 chr9 16603657 16603878 -101258749 + AluSx SINE Alu 43 267 -45 1716 163 4 4 chr9 16603978 16604255 -101258372 - AluSc SINE Alu -32 277 1 2351 119 3 0 chr9 16604360 16604672 -101257955 - AluSq SINE Alu 0 313 1 227 217 0 0 chr9 16604678 16604724 -101257903 - L2 LINE L2 0 3272 3227 338 265 147 15 chr9 16604998 16605134 -101257493 - MIR SINE MIR -50 212 59 210 191 24 0 chr9 16605311 16605353 -101257274 + (CATATA)n Simple_repeat Simple_repeat 2 44 0 1539 272 116 60 chr9 16606351 16607278 -101255349 + HAL1 LINE L1 64 937 -1570 2024 143 3 3 chr9 16607278 16607585 -101255042 + AluSq SINE Alu 1 307 -6 1539 272 116 60 chr9 16607585 16607707 -101254920 + HAL1 LINE L1 937 1051 -1456 2464 62 0 0 chr9 16607707 16608015 -101254612 - AluY SINE Alu -3 308 1 1539 272 116 60 chr9 16608015 16608090 -101254537 + HAL1 LINE L1 1051 1253 -1254 625 255 205 20 chr9 16608115 16608315 -101254312 - MIR SINE MIR -25 237 1 1638 121 34 1 chr9 16608523 16608979 -101253648 + L1P4 LINE L1 5026 5492 -669 2664 43 0 0 chr9 16608979 16609281 -101253346 + AluY SINE Alu 1 302 -9 4727 197 36 32 chr9 16609283 16609597 -101253030 + L1MB7 LINE L1 4119 4430 -1754 1910 155 10 0 chr9 16609597 16609888 -101252739 + AluJo SINE Alu 1 294 -18 4727 197 36 32 chr9 16609888 16610247 -101252380 + L1MB7 LINE L1 4430 4786 -1398 1981 113 18 0 chr9 16610247 16610521 -101252106 + AluSg SINE Alu 19 297 -13 4727 197 36 32 chr9 16610521 16610969 -101251658 + L1MB7 LINE L1 4786 5231 -953 1846 168 3 3 chr9 16610969 16611272 -101251355 - AluSx SINE Alu -9 303 1 4727 197 36 32 chr9 16611272 16611955 -101250672 + L1MB7 LINE L1 5231 5933 -251 7385 36 0 2 chr9 16612056 16613603 -101249024 + L1PA3 LINE L1 4609 6154 -1 46 54 0 0 chr9 16613624 16613698 -101248929 + AT_rich Low_complexity Low_complexity 1 74 0 404 348 122 36 chr9 16613699 16614035 -101248592 - HAL1 LINE L1 -1778 729 365 2159 156 38 7 chr9 16614057 16614474 -101248153 - L1MB8 LINE L1 -11 6167 5738 1028 148 28 12 chr9 16614474 16614694 -101247933 - MLT2A2 LTR ERVL 0 453 295 414 189 11 0 chr9 16614700 16614790 -101247837 - L1MB8 LINE L1 -782 5392 5302 1850 116 30 7 chr9 16614818 16615120 -101247507 - MLT2A2 LTR ERVL -144 309 1 2155 172 11 18 chr9 16615122 16615564 -101247063 - L1M4 LINE L1 -438 5740 5302 2041 154 0 3 chr9 16615882 16616187 -101246440 + AluJb SINE Alu 1 304 -8 2319 119 0 0 chr9 16616389 16616701 -101245926 + AluSx SINE Alu 1 312 0 202 292 150 0 chr9 16617027 16617140 -101245487 - MIR SINE MIR -56 206 77 956 35 28 14 chr9 16617428 16617569 -101245058 + (TTTC)n Simple_repeat Simple_repeat 2 144 0 789 157 0 0 chr9 16617576 16617691 -101244936 - FLAM_A SINE Alu -18 115 1 235 71 48 0 chr9 16618316 16618358 -101244269 + CT-rich Low_complexity Low_complexity 1 44 0 1013 186 0 17 chr9 16618861 16619038 -101243589 + FAM SINE Alu 1 174 -1 291 282 13 0 chr9 16619243 16619321 -101243306 + L2 LINE L2 3221 3299 -14 1604 36 5 0 chr9 16619553 16619745 -101242882 - L1PA3 LINE L1 -2 6153 5961 194 345 134 8 chr9 16621332 16621451 -101241176 - MIR3 SINE MIR -54 154 21 30221 38 5 0 chr9 16621829 16626472 -101236155 - L1PA4 LINE L1 0 6155 1497 2725 126 36 2 chr9 16626853 16627267 -101235360 + MSTA LTR MaLR 1 428 0 440 234 0 0 chr9 16627267 16627361 -101235266 - HAL1 LINE L1 -1633 874 781 294 291 98 56 chr9 16627393 16627771 -101234856 - HAL1 LINE L1 -1813 694 278 1860 185 22 16 chr9 16627771 16628134 -101234493 + MLT1A1 LTR MaLR 1 365 0 294 291 98 56 chr9 16628134 16628376 -101234251 - HAL1 LINE L1 -2229 278 48 978 227 38 0 chr9 16628952 16629190 -101233437 - L1M4 LINE L1 -487 5691 5445 1285 120 34 4 chr9 16629190 16629424 -101233203 - MER6 DNA MER2_type -4 861 621 2339 87 3 7 chr9 16629441 16629750 -101232877 - AluSg SINE Alu 0 310 3 285 133 0 3 chr9 16629753 16629811 -101232816 - L1M4 LINE L1 -745 5429 5373 * 1474 218 31 6 chr9 16629810 16630163 -101232464 - L1M4 LINE L1 -5595 947 586 915 236 3 76 chr9 16630180 16630510 -101232117 - L1M4 LINE L1 -6202 340 35 410 286 9 0 chr9 16630661 16630766 -101231861 - HAL1 LINE L1 -1667 840 735 361 260 174 21 chr9 16630790 16631163 -101231464 + L1M4 LINE L1 3430 3859 -2287 1703 174 13 7 chr9 16631707 16631873 -101230754 - AluJb SINE Alu -11 301 131 2279 114 0 3 chr9 16631873 16632181 -101230446 - AluSx SINE Alu -5 307 1 1703 174 13 7 chr9 16632181 16632313 -101230314 - AluJb SINE Alu -181 131 1 36 53 0 0 chr9 16632351 16632408 -101230219 + AT_rich Low_complexity Low_complexity 1 57 0 1326 105 0 20 chr9 16632770 16632970 -101229657 - MSTA LTR MaLR 0 428 233 1934 123 15 9 chr9 16632971 16633303 -101229324 - L1P3 LINE L1 -4844 1617 1284 1290 76 0 0 chr9 16633309 16633467 -101229160 - AluY SINE Alu -15 296 139 794 190 6 49 chr9 16633591 16633754 -101228873 - AluJb SINE Alu -20 292 137 183 42 0 0 chr9 16633756 16633780 -101228847 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2329 63 0 3 chr9 16633780 16634064 -101228563 - AluY SINE Alu -28 283 1 6819 136 27 32 chr9 16634074 16635350 -101227277 - L1P3 LINE L1 -5183 1278 10 12111 137 26 22 chr9 16635368 16637354 -101225273 + Tigger1 DNA MER2_type 221 2218 -200 2087 139 0 3 chr9 16637354 16637655 -101224972 - AluSx SINE Alu -12 300 1 12111 137 26 22 chr9 16637655 16637856 -101224771 + Tigger1 DNA MER2_type 2218 2417 -1 4865 114 6 1 chr9 16637972 16638682 -101223945 + L1PA13 LINE L1 5447 6159 -4 288 0 0 0 chr9 16639864 16639896 -101222731 + (CA)n Simple_repeat Simple_repeat 1 32 0 1033 195 5 15 chr9 16640662 16640862 -101221765 + AluJb SINE Alu 97 294 -18 2276 98 0 22 chr9 16640910 16641227 -101221400 - AluSx SINE Alu -2 310 1 873 150 0 0 chr9 16641424 16641564 -101221063 + FLAM_C SINE Alu 1 140 -3 21 57 0 0 chr9 16641740 16641775 -101220852 + AT_rich Low_complexity Low_complexity 1 35 0 2224 115 0 13 chr9 16641776 16642088 -101220539 - AluSg SINE Alu -2 308 1 1045 84 0 56 chr9 16642089 16642232 -101220395 - AluSq/x SINE Alu -178 135 1 200 279 0 0 chr9 16642453 16642496 -101220131 + MIR SINE MIR 88 130 -78 2028 121 6 32 chr9 16642803 16643117 -101219510 - AluJo SINE Alu -6 306 1 790 147 60 106 chr9 16643217 16643435 -101219192 + Charlie4 DNA MER1_type 1 208 -1753 2252 113 0 0 chr9 16643457 16643749 -101218878 + AluSx SINE Alu 5 296 -16 297 0 0 0 chr9 16643781 16643814 -101218813 + (TG)n Simple_repeat Simple_repeat 2 34 0 1658 184 3 17 chr9 16643847 16644141 -101218486 - AluJo SINE Alu -22 290 1 406 291 95 1 chr9 16645263 16645611 -101217016 - LTR33A LTR ERVL -13 510 84 1809 155 40 0 chr9 16645882 16646061 -101216566 - AluJb SINE Alu -4 308 111 387 0 0 0 chr9 16646061 16646104 -101216523 + (TTA)n Simple_repeat Simple_repeat 2 44 0 1809 155 40 0 chr9 16646104 16646220 -101216407 - AluJb SINE Alu -201 111 1 23 0 0 0 chr9 16646370 16646393 -101216234 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr9 16647206 16647227 -101215400 + AT_rich Low_complexity Low_complexity 1 21 0 692 205 25 12 chr9 16647284 16647495 -101215132 - L1ME3A LINE L1 -160 6002 5774 949 173 85 8 chr9 16647599 16647847 -101214780 - L1ME3A LINE L1 -218 5952 5686 2403 147 18 20 chr9 16647911 16648751 -101213876 + L1PB1 LINE L1 4769 5600 -551 10141 67 7 4 chr9 16648751 16650856 -101211771 + L1PA7 LINE L1 4047 6154 0 3485 91 40 22 chr9 16650856 16651048 -101211579 + L1PB1 LINE L1 5593 5780 -371 2336 74 17 0 chr9 16651048 16651344 -101211283 + AluSc SINE Alu 1 301 -8 3485 91 40 22 chr9 16651344 16651698 -101210929 + L1PB1 LINE L1 5780 6150 -1 2353 63 0 10 chr9 16651781 16652081 -101210546 - AluSg1 SINE Alu -11 298 2 1448 169 116 11 chr9 16652171 16652533 -101210094 - MER39 LTR ERV1 0 707 308 388 220 105 55 chr9 16652528 16652693 -101209934 - MER39 LTR ERV1 -377 165 4 * 281 255 49 29 chr9 16652743 16652845 -101209782 - MIR3 SINE MIR -16 192 89 2766 237 23 34 chr9 16652845 16653623 -101209004 + L1ME2 LINE L1 5327 6097 -67 1923 160 7 0 chr9 16653623 16653910 -101208717 + AluSx SINE Alu 13 301 -11 2766 237 23 34 chr9 16653910 16653965 -101208662 + L1ME2 LINE L1 6097 6151 -13 239 258 0 0 chr9 16654000 16654062 -101208565 + L1MC4 LINE L1 7826 7887 -155 221 235 0 0 chr9 16654074 16654125 -101208502 + (TGGA)n Simple_repeat Simple_repeat 3 53 0 308 282 10 0 chr9 16654128 16654231 -101208396 + L1MC4 LINE L1 7924 8027 -15 1350 253 122 78 chr9 16654281 16654736 -101207891 + HAL1 LINE L1 100 534 -1973 1654 178 10 27 chr9 16654736 16655028 -101207599 - AluJo SINE Alu -25 287 1 1350 253 122 78 chr9 16655028 16655130 -101207497 + HAL1 LINE L1 534 630 -1877 2149 118 48 25 chr9 16655130 16655486 -101207141 + THE1B LTR MaLR 1 364 0 1350 253 122 78 chr9 16655486 16655870 -101206757 + HAL1 LINE L1 630 1083 -1424 2122 116 3 0 chr9 16655870 16656155 -101206472 + AluSg SINE Alu 1 286 -24 30699 61 4 1 chr9 16656763 16660909 -101201718 - L1P LINE L1 -1980 4166 7 2311 105 0 7 chr9 16662260 16662566 -101200061 - AluSx SINE Alu -8 304 1 2104 79 0 34 chr9 16662574 16662866 -101199761 - AluY SINE Alu -3 308 27 6552 73 21 12 chr9 16662866 16663939 -101198688 - L1PA10 LINE L1 -14 6154 5074 1515 186 76 3 chr9 16664515 16664806 -101197821 - AluJo SINE Alu 0 312 1 2184 93 6 35 chr9 16665007 16665320 -101197307 + AluSg SINE Alu 1 304 -6 1524 137 90 13 chr9 16665543 16665843 -101196784 - MER44D DNA MER2_type -10 599 7 344 296 53 8 chr9 16665859 16665991 -101196636 - L1ME LINE L1 -400 5762 5625 2002 151 0 3 chr9 16667069 16667374 -101195253 - AluJb SINE Alu -8 304 1 232 319 35 35 chr9 16667410 16667487 -101195140 - L1ME LINE L1 -335 5835 5756 2573 145 31 0 chr9 16667487 16667902 -101194725 - MSTC LTR MaLR 0 428 1 232 319 35 35 chr9 16667902 16667965 -101194662 - L1ME LINE L1 -413 5757 5695 244 239 220 37 chr9 16668009 16668227 -101194400 - L1ME LINE L1 -577 5585 5328 22156 54 2 2 chr9 16668495 16672135 -101190492 - L1PA5 LINE L1 -7 6147 2508 41524 45 2 2 chr9 16672212 16677813 -101184814 + L1P1 LINE L1 1 5605 -550 323 344 40 20 chr9 16678868 16679019 -101183608 - MIR SINE MIR -56 206 53 309 248 10 69 chr9 16679212 16679313 -101183314 - MIR SINE MIR -167 95 1 1628 122 37 1 chr9 16679523 16679978 -101182649 + L1P4 LINE L1 5026 5492 -669 2522 56 0 0 chr9 16679978 16680280 -101182347 + AluY SINE Alu 1 302 -9 1091 154 27 23 chr9 16680282 16680542 -101182085 + L1MC/D LINE L1 4119 4379 -1767 802 146 0 0 chr9 16680543 16680673 -101181954 + AluSc SINE Alu 180 309 0 1552 50 0 0 chr9 16681019 16681199 -101181428 + AluY SINE Alu 121 300 -11 856 126 0 0 chr9 16681200 16681335 -101181292 - L1MA4 LINE L1 -384 5916 5782 646 196 0 0 chr9 16681379 16681491 -101181136 - FLAM_A SINE Alu -10 132 21 1039 134 6 0 chr9 16681508 16681680 -101180947 - L1MA4 LINE L1 -518 5785 5613 2041 111 3 3 chr9 16681680 16682004 -101180623 - pTR5 LTR ERV1 -2049 389 66 372 188 30 20 chr9 16682004 16682105 -101180522 - LTR30 LTR ERV1 -80 642 541 741 129 190 18 chr9 16682106 16682269 -101180358 - pTR5 LTR ERV1 -417 2021 1831 2165 105 0 10 chr9 16682557 16682861 -101179766 - AluY SINE Alu -10 301 1 1325 224 58 26 chr9 16683568 16684037 -101178590 + HAL1 LINE L1 1069 1552 -955 1250 205 3 41 chr9 16684215 16684268 -101178359 + L1MC/D LINE L1 4616 4669 -1477 2162 131 0 0 chr9 16684268 16684558 -101178069 + AluSx SINE Alu 1 290 -22 1250 205 3 41 chr9 16684558 16684846 -101177781 + L1MC/D LINE L1 4669 4944 -1202 264 148 0 0 chr9 16684863 16684917 -101177710 + Alu SINE Alu 248 301 -1 639 228 49 11 chr9 16684917 16685134 -101177493 + L1MB8 LINE L1 5960 6178 0 578 282 111 28 chr9 16685561 16686114 -101176513 + L1MC/D LINE L1 5215 5818 -751 25 51 0 0 chr9 16686328 16686367 -101176260 + AT_rich Low_complexity Low_complexity 1 39 0 243 88 0 0 chr9 16686386 16686420 -101176207 + (TA)n Simple_repeat Simple_repeat 1 34 0 1704 181 17 3 chr9 16686526 16686814 -101175813 - AluJb SINE Alu -20 292 1 2146 120 0 7 chr9 16686934 16687246 -101175381 + AluSx SINE Alu 1 312 0 432 303 197 67 chr9 16687397 16687935 -101174692 + L2 LINE L2 1706 2313 -1001 233 246 18 0 chr9 16687943 16688000 -101174627 - L2 LINE L2 0 3272 3215 206 289 42 127 chr9 16688150 16688225 -101174402 + L2 LINE L2 2424 2504 -810 234 91 0 0 chr9 16688225 16688258 -101174369 + (CAATC)n Simple_repeat Simple_repeat 3 35 0 206 289 42 127 chr9 16688258 16688442 -101174185 + L2 LINE L2 2504 2661 -653 702 211 40 7 chr9 16688485 16688637 -101173990 + MIR SINE MIR 99 255 -7 21 0 0 0 chr9 16689477 16689498 -101173129 + AT_rich Low_complexity Low_complexity 1 21 0 32 26 0 0 chr9 16690376 16690415 -101172212 + AT_rich Low_complexity Low_complexity 1 39 0 945 316 66 9 chr9 16690589 16691042 -101171585 + LTR33 LTR ERVL 23 501 -20 1651 124 25 0 chr9 16691159 16691433 -101171194 - Tigger1 DNA MER2_type -60 2358 2078 1003 158 37 23 chr9 16691467 16691682 -101170945 - L1MA4A LINE L1 -16 6287 6070 30 0 0 0 chr9 16694597 16694627 -101168000 + AT_rich Low_complexity Low_complexity 1 30 0 602 220 0 0 chr9 16694963 16695072 -101167555 + FLAM_A SINE Alu 14 122 -20 277 269 0 0 chr9 16695599 16695666 -101166961 + L2 LINE L2 2634 2700 -614 1160 156 60 39 chr9 16695674 16695801 -101166826 + L1MA9 LINE L1 6021 6144 -168 270 0 0 0 chr9 16695801 16695831 -101166796 + (CA)n Simple_repeat Simple_repeat 2 31 0 1160 156 60 39 chr9 16695831 16695985 -101166642 + L1MA9 LINE L1 6144 6308 -4 758 311 78 14 chr9 16696003 16696347 -101166280 + L2 LINE L2 2702 3063 -250 6686 44 0 0 chr9 16696356 16697169 -101165458 + L1PA5 LINE L1 5342 6154 0 631 216 110 5 chr9 16697175 16697456 -101165171 - L1M4 LINE L1 -699 5475 5173 1817 116 44 44 chr9 16697488 16697851 -101164776 - L1MA4A LINE L1 -5 6298 5936 2225 105 3 0 chr9 16697877 16698171 -101164456 - AluSx SINE Alu -17 295 1 773 140 0 91 chr9 16698176 16698319 -101164308 - FLAM_C SINE Alu -3 130 1 1733 96 16 8 chr9 16698319 16698569 -101164058 - L1MA4A LINE L1 -353 5950 5699 225 0 0 0 chr9 16698588 16698613 -101164014 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 277 335 42 108 chr9 16699507 16699633 -101162994 + MIR SINE MIR 11 125 -137 2340 103 0 0 chr9 16699633 16699934 -101162693 - AluSx SINE Alu -11 301 1 277 335 42 108 chr9 16699934 16699974 -101162653 + MIR SINE MIR 125 166 -96 351 273 76 58 chr9 16701661 16701833 -101160794 - MIR3 SINE MIR -1 207 33 25 65 0 0 chr9 16703637 16703683 -101158944 + AT_rich Low_complexity Low_complexity 1 46 0 29 0 0 0 chr9 16704267 16704296 -101158331 + AT_rich Low_complexity Low_complexity 1 29 0 30 0 0 0 chr9 16704839 16704869 -101157758 + AT_rich Low_complexity Low_complexity 1 30 0 3086 230 51 25 chr9 16705055 16705122 -101157505 - L1ME2 LINE L1 -12 6152 6088 1821 127 22 9 chr9 16705122 16705446 -101157181 - L1MA4A LINE L1 -8 6295 5968 3086 230 51 25 chr9 16705446 16706657 -101155970 - L1ME2 LINE L1 -76 6088 4842 2901 211 54 33 chr9 16706658 16707913 -101154714 - L1MC4 LINE L1 -748 5398 4690 1613 180 10 23 chr9 16707958 16708258 -101154369 - AluJb SINE Alu -16 296 1 2158 100 0 33 chr9 16708438 16708739 -101153888 + AluSp SINE Alu 1 291 -22 1787 176 14 0 chr9 16708844 16709134 -101153493 - AluJb SINE Alu -18 294 1 2100 128 0 0 chr9 16710408 16710690 -101151937 - AluSx SINE Alu -26 286 5 22 35 0 0 chr9 16712192 16712221 -101150406 + AT_rich Low_complexity Low_complexity 1 29 0 500 197 88 27 chr9 16712397 16712544 -101150083 - L1MC5 LINE L1 -48 7913 7758 24 77 0 0 chr9 16712660 16712712 -101149915 + AT_rich Low_complexity Low_complexity 1 52 0 213 179 0 0 chr9 16712831 16712862 -101149765 + CT-rich Low_complexity Low_complexity 1 34 -5 2065 98 25 3 chr9 16712862 16713147 -101149480 - AluY SINE Alu -20 291 1 1988 128 7 3 chr9 16713155 16713443 -101149184 - AluSx SINE Alu -23 289 1 417 233 41 0 chr9 16713448 16713594 -101149033 - L1MC5 LINE L1 -466 7495 7344 574 198 98 11 chr9 16713594 16713770 -101148857 + MER3 DNA MER1_type 12 150 -59 540 202 18 0 chr9 16714141 16714250 -101148377 - MLT2B1 LTR ERVL -6 622 512 431 192 13 0 chr9 16714278 16714356 -101148271 - Tigger5 DNA MER2_type -2244 79 1 635 200 60 0 chr9 16714368 16714518 -101148109 - ERVL LTR ERVL -387 5377 5219 1115 234 174 30 chr9 16714521 16714855 -101147772 - MLT2B1 LTR ERVL -138 382 1 691 134 8 8 chr9 16714855 16714974 -101147653 - L1MB2 LINE L1 -163 6008 5890 2910 259 33 10 chr9 16714974 16716276 -101146351 - ERVL LTR ERVL -1161 4603 3238 4603 268 41 37 chr9 16716294 16717798 -101144829 - ERVL LTR ERVL -2947 2817 1308 243 196 36 0 chr9 16718578 16718634 -101143993 - MLT2B2 LTR ERVL -457 58 1 421 167 24 0 chr9 16718634 16718718 -101143909 - L1MB2 LINE L1 -163 6008 5923 2132 165 58 5 chr9 16719086 16719462 -101143165 - MSTD LTR MaLR 0 396 1 15721 168 51 3 chr9 16719465 16721885 -101140742 + L1M1 LINE L1 16 2566 -4999 276 30 0 0 chr9 16721885 16721918 -101140709 + (GA)n Simple_repeat Simple_repeat 1 33 0 15721 168 51 3 chr9 16721918 16722052 -101140575 + L1M1 LINE L1 2566 2692 -4873 379 365 76 0 chr9 16722812 16722957 -101139670 + L2 LINE L2 3117 3272 0 22 0 0 0 chr9 16723026 16723048 -101139579 + AT_rich Low_complexity Low_complexity 1 22 0 927 59 0 0 chr9 16723169 16723288 -101139339 - L1PA5 LINE L1 -7 6147 6029 33684 71 3 3 chr9 16723388 16727799 -101134828 - L1P LINE L1 -1726 4420 11 3216 179 26 17 chr9 16727809 16728506 -101134121 + L1MB7 LINE L1 5463 6165 -19 505 85 0 0 chr9 16728909 16728991 -101133636 + L1PB1 LINE L1 6066 6147 -4 249 277 0 0 chr9 16729695 16729778 -101132849 - L1MC4 LINE L1 -1339 6703 6621 241 284 23 0 chr9 16729699 16729787 -101132840 + L1MC4 LINE L1 6614 6703 -1339 * 2125 126 10 0 chr9 16729890 16730184 -101132443 - AluSx SINE Alu -15 297 1 242 300 0 0 chr9 16732018 16732068 -101130559 - L2 LINE L2 -16 3256 3207 21 71 0 0 chr9 16733365 16733407 -101129220 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr9 16733553 16733574 -101129053 + AT_rich Low_complexity Low_complexity 1 21 0 3437 27 2 0 chr9 16734007 16734411 -101128216 + L1PA3 LINE L1 5565 5969 -186 1133 177 20 15 chr9 16734551 16734754 -101127873 - AluJb SINE Alu -22 290 87 1478 186 7 62 chr9 16734757 16735083 -101127544 - L1M4 LINE L1 -1082 5064 4763 1452 179 52 34 chr9 16735083 16735374 -101127253 - AluSx SINE Alu -16 296 1 1478 186 7 62 chr9 16735374 16735450 -101127177 - L1M4 LINE L1 -1383 4763 4684 1641 179 0 11 chr9 16735796 16736075 -101126552 - AluJb SINE Alu -36 276 1 729 223 34 39 chr9 16736162 16736395 -101126232 - L1MC5 LINE L1 -36 7925 7694 511 216 108 0 chr9 16736427 16736538 -101126089 - FLAM_C SINE Alu -20 123 1 262 161 62 12 chr9 16736552 16736633 -101125994 - L1MC5 LINE L1 -267 7694 7610 1366 100 0 0 chr9 16737297 16737487 -101125140 + L1P LINE L1 1 190 -5956 2662 42 12 0 chr9 16737494 16737825 -101124802 + L1PA4 LINE L1 5821 6155 0 22 35 0 0 chr9 16737849 16737878 -101124749 + AT_rich Low_complexity Low_complexity 1 29 0 3426 221 3 43 chr9 16738176 16738671 -101123956 + L1ME1 LINE L1 5126 5639 -527 2382 76 0 10 chr9 16738671 16738974 -101123653 + AluY SINE Alu 1 300 -11 3426 221 3 43 chr9 16738974 16739565 -101123062 + L1ME1 LINE L1 5639 6161 -5 250 309 0 0 chr9 16740029 16740084 -101122543 + Cheshire DNA MER1_type 2 56 -2364 287 197 127 0 chr9 16740087 16740158 -101122469 + Cheshire DNA MER1_type 210 289 -2131 196 365 144 0 chr9 16740240 16740344 -101122283 - L2 LINE L2 -18 3295 3177 938 178 168 0 chr9 16740537 16740728 -101121899 + MER58A DNA MER1_type 2 224 0 268 333 89 22 chr9 16740801 16741026 -101121601 - L2 LINE L2 -439 2875 2636 2474 176 72 9 chr9 16741086 16741547 -101121080 + MLT1D LTR MaLR 8 497 -8 4323 117 10 41 chr9 16742955 16743633 -101118994 - L1PA16 LINE L1 -9 6157 5500 2436 60 0 0 chr9 16743633 16743934 -101118693 + AluY SINE Alu 2 302 -9 4323 117 10 41 chr9 16743934 16743967 -101118660 - L1PA16 LINE L1 -666 5500 5468 2071 121 0 0 chr9 16744630 16744911 -101117716 + AluSx SINE Alu 2 282 -30 305 318 27 9 chr9 16745211 16745321 -101117306 + L2 LINE L2 3197 3308 -5 2020 119 0 18 chr9 16745328 16745659 -101116968 + AluSx SINE Alu 1 326 0 316 314 13 85 chr9 16745659 16745812 -101116815 - MIR SINE MIR -65 197 56 249 211 42 0 chr9 16746102 16746173 -101116454 - L1MC4a LINE L1 -1860 5948 5875 2524 67 0 3 chr9 16746228 16746540 -101116087 - AluY SINE Alu 0 311 1 1940 138 16 3 chr9 16746568 16746888 -101115739 + L1PB4 LINE L1 5814 6137 -19 1792 180 0 0 chr9 16746888 16747183 -101115444 - AluJb SINE Alu -17 295 1 219 36 0 0 chr9 16747202 16747230 -101115397 + (CA)n Simple_repeat Simple_repeat 2 29 0 2075 75 4 4 chr9 16747324 16747590 -101115037 - AluSp SINE Alu -4 309 44 398 141 81 30 chr9 16747621 16747720 -101114907 - L1MC5 LINE L1 -50 7911 7808 23 0 0 0 chr9 16747757 16747780 -101114847 + AT_rich Low_complexity Low_complexity 1 23 0 * 830 167 13 20 chr9 16747758 16747908 -101114719 - FRAM SINE Alu -10 166 18 309 185 15 0 chr9 16747911 16747976 -101114651 - L1MC5 LINE L1 -171 7790 7725 1925 162 0 7 chr9 16748133 16748423 -101114204 + AluJo SINE Alu 1 288 -24 25 0 0 0 chr9 16748430 16748455 -101114172 + AT_rich Low_complexity Low_complexity 1 25 0 1104 143 0 12 chr9 16749253 16749414 -101113213 + AluJo SINE Alu 79 237 -75 283 256 250 0 chr9 16749534 16749698 -101112929 - MIR SINE MIR 0 262 58 446 270 25 45 chr9 16749908 16749998 -101112629 - MER113 DNA MER1_type? -310 211 121 2245 108 0 0 chr9 16749998 16750295 -101112332 + AluSx SINE Alu 1 297 -15 446 270 25 45 chr9 16750295 16750404 -101112223 - MER113 DNA MER1_type? -400 121 16 563 329 98 11 chr9 16750655 16750941 -101111686 + L3 LINE CR1 1257 1567 -10 23 0 0 0 chr9 16751191 16751214 -101111413 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr9 16751451 16751473 -101111154 + AT_rich Low_complexity Low_complexity 1 22 0 1615 143 0 7 chr9 16751961 16752240 -101110387 - L1MA4 LINE L1 0 6300 6024 204 40 0 0 chr9 16752587 16752612 -101110015 + (A)n Simple_repeat Simple_repeat 1 25 0 762 233 95 38 chr9 16752990 16753307 -101109320 - HAL1 LINE L1 -6 2501 2167 246 219 355 7 chr9 16753338 16753493 -101109134 + L2 LINE L2 3097 3305 -8 412 192 0 5 chr9 16753495 16753585 -101109042 + AluJ/FLAM SINE Alu 1 72 -230 926 188 0 0 chr9 16753588 16753748 -101108879 + AluJo/FRAM SINE Alu 145 304 -8 296 242 32 32 chr9 16753866 16753961 -101108666 - HAL1 LINE L1 -548 1959 1865 30812 77 4 10 chr9 16753982 16759074 -101103553 - L1PA6 LINE L1 -2 6467 1408 632 170 0 0 chr9 16759057 16759163 -101103464 - L1PA6 LINE L1 -6351 110 5 * 668 247 104 91 chr9 16759170 16759926 -101102701 - HAL1 LINE L1 -638 1869 1104 229 300 0 12 chr9 16760345 16760425 -101102202 + (TA)n Simple_repeat Simple_repeat 2 80 0 183 80 0 0 chr9 16760442 16760467 -101102160 + (CA)n Simple_repeat Simple_repeat 2 26 0 479 93 0 13 chr9 16760487 16760562 -101102065 + (TA)n Simple_repeat Simple_repeat 1 74 0 1723 191 0 3 chr9 16760563 16760846 -101101781 - AluJo SINE Alu -30 282 1 1476 201 10 7 chr9 16762187 16762475 -101100152 - AluJo SINE Alu -15 297 9 221 167 0 0 chr9 16764894 16764930 -101097697 - MIR3 SINE MIR -22 186 151 21 36 0 0 chr9 16764989 16765017 -101097610 + AT_rich Low_complexity Low_complexity 1 28 0 578 134 67 45 chr9 16765094 16765228 -101097399 - L1MA5A LINE L1 -1 6296 6160 22 35 0 0 chr9 16767151 16767180 -101095447 + AT_rich Low_complexity Low_complexity 1 29 0 1674 175 3 30 chr9 16767999 16768302 -101094325 + AluJb SINE Alu 3 297 -15 22 0 0 0 chr9 16768525 16768547 -101094080 + AT_rich Low_complexity Low_complexity 1 22 0 435 262 86 27 chr9 16768884 16769071 -101093556 + MIR SINE MIR 7 204 -58 902 85 0 0 chr9 16769072 16769190 -101093437 + AluY SINE Alu 187 304 -7 6274 216 33 34 chr9 16769215 16769965 -101092662 + L1M4 LINE L1 2280 3029 -3117 773 173 0 8 chr9 16769965 16770092 -101092535 + FLAM_A SINE Alu 4 129 -4 6274 216 33 34 chr9 16770092 16770496 -101092131 + L1M4 LINE L1 3029 3432 -2714 2222 115 3 0 chr9 16770496 16770800 -101091827 + AluSg SINE Alu 5 309 -1 6274 216 33 34 chr9 16770800 16771445 -101091182 + L1M4 LINE L1 3432 4078 -2068 25 75 0 0 chr9 16771642 16771695 -101090932 + AT_rich Low_complexity Low_complexity 1 53 0 884 156 7 7 chr9 16772296 16772450 -101090177 - L1M4 LINE L1 -527 5638 5481 21 36 0 0 chr9 16773296 16773324 -101089303 + AT_rich Low_complexity Low_complexity 1 28 0 234 299 0 45 chr9 16773357 16773424 -101089203 - L2 LINE L2 -5 3267 3204 207 293 159 57 chr9 16773442 16773599 -101089028 - L2 LINE L2 -1 3312 3140 484 269 103 13 chr9 16773962 16774118 -101088509 + MIR SINE MIR 77 246 -16 2178 115 0 0 chr9 16774234 16774530 -101088097 - AluY SINE Alu -15 296 1 797 295 48 47 chr9 16774633 16774945 -101087682 - L1M4 LINE L1 -1092 5054 4744 1955 139 0 17 chr9 16774945 16775233 -101087394 - AluSx SINE Alu -29 283 1 797 295 48 47 chr9 16775233 16775606 -101087021 - L1M4 LINE L1 -1402 4744 4333 2423 170 19 19 chr9 16775606 16776083 -101086544 - L1MB5 LINE L1 -2 6172 5696 797 295 48 47 chr9 16776083 16776400 -101086227 - L1M4 LINE L1 -1813 4333 4018 638 216 15 22 chr9 16777296 16777430 -101085197 - FLAM_A SINE Alu 0 133 1 594 182 0 0 chr9 16777577 16777676 -101084951 - AluJ/FLAM SINE Alu -213 99 1 1850 162 3 19 chr9 16777751 16778065 -101084562 - AluJo SINE Alu 0 312 4 34026 91 24 43 chr9 16781231 16787503 -101075124 + L1PA6 LINE L1 11 6154 0 444 313 49 6 chr9 16788874 16789064 -101073563 + MIR SINE MIR 57 253 -9 795 212 40 54 chr9 16789237 16789459 -101073168 + MIR SINE MIR 44 262 0 2985 159 31 65 chr9 16789904 16790577 -101072050 + L1MB8 LINE L1 5524 6173 -5 323 235 0 35 chr9 16790622 16790707 -101071920 - MLT1L LTR MaLR -338 277 196 2401 90 10 67 chr9 16790969 16791279 -101071348 - L1PA16 LINE L1 0 6166 5840 1859 154 39 39 chr9 16791279 16791635 -101070992 + THE1B LTR MaLR 5 360 -4 11456 81 13 16 chr9 16791643 16793227 -101069400 + THE1B-int LTR MaLR 1 1580 0 2021 143 48 28 chr9 16793227 16793584 -101069043 + THE1B LTR MaLR 1 364 0 2401 90 10 67 chr9 16793584 16793652 -101068975 - L1PA16 LINE L1 -331 5835 5800 213 103 0 77 chr9 16793700 16793739 -101068888 + (TCCC)n Simple_repeat Simple_repeat 2 37 0 1586 199 85 16 chr9 16793948 16794325 -101068302 - L1MC4 LINE L1 -198 7844 7442 370 282 15 8 chr9 16794337 16794468 -101068159 - L1ME4a LINE L1 -218 5903 5772 519 236 115 7 chr9 16795011 16795159 -101067468 + MIR SINE MIR 1 164 -98 507 206 194 0 chr9 16796045 16796192 -101066435 + MER5A DNA MER1_type 4 183 -6 34 42 0 0 chr9 16796204 16796252 -101066375 + AT_rich Low_complexity Low_complexity 1 48 0 543 236 120 54 chr9 16797253 16797494 -101065133 - L1ME1 LINE L1 -7 6159 5903 1000 255 48 131 chr9 16797516 16798235 -101064392 - MER21B LTR ERV1 -193 670 35 1202 236 14 7 chr9 16798258 16798555 -101064072 - L1ME1 LINE L1 -251 5913 5615 3617 250 87 83 chr9 16798605 16800297 -101062330 - L2 LINE L2 -327 2986 1288 454 261 62 8 chr9 16800304 16800434 -101062193 - L2 LINE L2 -2139 1175 1039 2192 226 37 31 chr9 16800434 16800920 -101061707 + LTR40a LTR ERVL 1 489 -30 575 152 0 22 chr9 16800922 16801014 -101061613 - FRAM/FAM SINE Alu -93 83 1 1011 210 77 55 chr9 16801028 16801239 -101061388 + Charlie2 DNA MER1_type 2433 2657 -205 1783 173 0 31 chr9 16801239 16801557 -101061070 - AluJo SINE Alu -2 310 3 1011 210 77 55 chr9 16801557 16801711 -101060916 + Charlie2 DNA MER1_type 2657 2806 -56 2000 211 57 39 chr9 16801711 16802205 -101060422 - MLT1D LTR MaLR -2 503 1 598 182 0 0 chr9 16802390 16802500 -101060127 - AluSq/x SINE Alu -202 110 1 378 330 162 38 chr9 16802517 16802944 -101059683 + L2 LINE L2 2175 2654 -660 258 237 13 26 chr9 16803236 16803312 -101059315 + MIR SINE MIR 138 212 -50 906 208 27 88 chr9 16803830 16804124 -101058503 + Charlie4 DNA MER1_type 1 276 -1685 1009 248 92 75 chr9 16804327 16804967 -101057660 + Charlie4 DNA MER1_type 1293 1943 -18 21 36 0 0 chr9 16805467 16805495 -101057132 + AT_rich Low_complexity Low_complexity 1 28 0 238 295 18 27 chr9 16805515 16805627 -101057000 - L1MC/D LINE L1 -1999 5809 5699 192 167 48 0 chr9 16805663 16805705 -101056922 - L3 LINE CR1 -708 869 826 378 286 156 59 chr9 16805757 16806317 -101056310 - L1MC/D LINE L1 -747 5399 4889 1765 156 3 3 chr9 16806317 16806599 -101056028 - AluSx SINE Alu -30 282 1 378 286 156 59 chr9 16806599 16806868 -101055759 - L1MC/D LINE L1 -1257 4889 4648 354 322 33 22 chr9 16807082 16807265 -101055362 - L2 LINE L2 -484 2830 2646 328 233 9 26 chr9 16807432 16807548 -101055079 + (TTA)n Simple_repeat Simple_repeat 1 114 0 22 0 0 0 chr9 16808128 16808150 -101054477 + AT_rich Low_complexity Low_complexity 1 22 0 1999 147 24 72 chr9 16808432 16808848 -101053779 - MSTD LTR MaLR 0 396 1 265 281 176 41 chr9 16809064 16809359 -101053268 + L1MEd LINE L1 282 616 -5503 353 280 119 18 chr9 16809602 16809770 -101052857 + L1MEd LINE L1 918 1102 -5017 321 234 32 0 chr9 16809943 16810037 -101052590 - L1ME1 LINE L1 -8 6394 6298 * 323 167 0 135 chr9 16810034 16810130 -101052497 - L1PA15-16 LINE L1 -5466 1383 1301 * 884 145 0 150 chr9 16810123 16810350 -101052277 - L1PA15-16 LINE L1 -5436 1413 1221 * 1462 223 84 71 chr9 16810325 16810648 -101051979 - L1ME1 LINE L1 -520 6349 6032 1960 146 3 0 chr9 16810648 16810936 -101051691 - AluJb SINE Alu -23 289 1 1462 223 84 71 chr9 16810936 16811601 -101051026 - L1ME1 LINE L1 -837 6032 5326 422 234 124 9 chr9 16811634 16811844 -101050783 - L1ME1 LINE L1 -2789 3593 3356 769 73 0 73 chr9 16811844 16811981 -101050646 - L1PA8 LINE L1 0 6172 6046 793 294 35 0 chr9 16812018 16812215 -101050412 + MER58A DNA MER1_type 1 204 -20 1346 250 44 12 chr9 16812217 16812556 -101050071 - L1ME1 LINE L1 -4250 2313 1956 279 0 0 0 chr9 16812556 16812587 -101050040 + (TA)n Simple_repeat Simple_repeat 2 32 0 1346 250 44 12 chr9 16812587 16812679 -101049948 - L1ME1 LINE L1 -4607 1956 1868 347 300 58 16 chr9 16812684 16812874 -101049753 - L1ME1 LINE L1 -4756 1807 1610 9239 137 12 8 chr9 16812893 16815532 -101047095 - L1MA2 LINE L1 0 6304 3659 297 287 11 0 chr9 16815531 16815625 -101047002 - L1ME1 LINE L1 -4914 1470 1376 * 180 97 0 0 chr9 16815625 16815656 -101046971 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 20105 180 29 20 chr9 16815674 16821497 -101041130 - L1PA11 LINE L1 -8 6235 37 532 311 133 41 chr9 16821522 16822214 -101040413 - L2 LINE L2 -1884 1430 666 1788 177 19 40 chr9 16822214 16822587 -101040040 - MLT1A1 LTR MaLR 0 365 1 532 311 133 41 chr9 16822587 16822624 -101040003 - L2 LINE L2 -2648 666 634 551 140 43 0 chr9 16822707 16822800 -101039827 - MER3 DNA MER1_type -2 207 111 4697 94 12 154 chr9 16822800 16823758 -101038869 - LTR12 LTR ERV1 0 826 5 2291 197 26 30 chr9 16823774 16824379 -101038248 - pTR5 LTR ERV1 -1094 1344 742 572 232 9 0 chr9 16824379 16824491 -101038136 - MER3 DNA MER1_type -96 113 1 183 80 0 0 chr9 16826588 16826613 -101036014 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 1639 99 0 0 chr9 16826644 16826856 -101035771 - AluY SINE Alu -99 212 1 23 33 0 0 chr9 16826856 16826886 -101035741 + AT_rich Low_complexity Low_complexity 1 30 0 28 29 0 0 chr9 16827384 16827419 -101035208 + AT_rich Low_complexity Low_complexity 1 35 0 897 28 9 0 chr9 16827419 16827525 -101035102 - U6 snRNA snRNA 0 107 1 24 0 0 0 chr9 16828736 16828760 -101033867 + AT_rich Low_complexity Low_complexity 1 24 0 2835 9 0 30 chr9 16829254 16829582 -101033045 + AluYb8 SINE Alu 1 318 0 2185 100 7 23 chr9 16829595 16829904 -101032723 + AluSx SINE Alu 1 304 -8 2196 112 0 0 chr9 16830604 16830898 -101031729 - AluSx SINE Alu -18 294 1 272 262 52 123 chr9 16831564 16831639 -101030988 - L1ME4a LINE L1 0 6121 6042 793 189 0 0 chr9 16831639 16831766 -101030861 + FLAM_C SINE Alu 1 127 -6 272 262 52 123 chr9 16831766 16832136 -101030491 - L1ME4a LINE L1 -79 6042 5708 2044 117 21 3 chr9 16832668 16832951 -101029676 - AluSx SINE Alu -24 288 1 733 333 34 13 chr9 16833009 16833246 -101029381 - MIR SINE MIR -8 254 13 439 263 132 50 chr9 16835081 16835362 -101027265 - L2 LINE L2 -5 3308 3005 25 65 0 0 chr9 16836167 16836213 -101026414 + AT_rich Low_complexity Low_complexity 1 46 0 287 277 53 0 chr9 16836721 16836815 -101025812 - MIR SINE MIR -3 259 161 348 299 227 0 chr9 16836864 16837018 -101025609 - MIR SINE MIR -69 193 5 308 274 112 28 chr9 16837023 16837202 -101025425 - MIR SINE MIR -12 250 57 362 225 0 0 chr9 16837351 16837431 -101025196 - MER116 DNA Mariner 0 80 1 281 276 93 26 chr9 16837548 16837816 -101024811 - L1ME4a LINE L1 -1 6120 5835 1314 182 56 94 chr9 16837825 16838293 -101024334 + LTR7 LTR ERV1 1 450 0 1417 153 95 7 chr9 16838343 16838637 -101023990 - L1MA7 LINE L1 0 6291 5972 267 203 0 0 chr9 16838701 16838765 -101023862 + CT-rich Low_complexity Low_complexity 3 66 0 702 281 101 16 chr9 16838792 16839109 -101023518 - L1ME4a LINE L1 -394 5727 5384 592 263 118 5 chr9 16839394 16839580 -101023047 + MIR SINE MIR 2 208 -54 275 133 0 0 chr9 16839823 16839868 -101022759 - FLAM_A SINE Alu 0 133 89 1167 175 22 36 chr9 16839868 16840091 -101022536 - AluJo SINE Alu -92 220 1 1487 130 8 25 chr9 16840349 16840588 -101022039 + MER46A DNA MER2_type 1 235 -1 10775 41 2 0 chr9 16840844 16842926 -101019701 - L1PA5 LINE L1 -6 6148 4060 14587 55 3 0 chr9 16842928 16844788 -101017839 + L1P LINE L1 852 2717 -3429 1634 161 47 0 chr9 16844790 16845069 -101017558 - AluSc SINE Alu -1 308 17 293 294 93 23 chr9 16845073 16845287 -101017340 - L1ME4a LINE L1 -1832 4314 4086 20270 61 1 0 chr9 16845396 16847998 -101014629 - L1P LINE L1 -3038 3108 504 687 12 0 0 chr9 16848100 16848180 -101014447 + L1P LINE L1 4674 4753 -1393 2499 150 9 21 chr9 16848726 16849159 -101013468 - L1MB2 LINE L1 -143 6264 5837 22 0 0 0 chr9 16849199 16849221 -101013406 + AT_rich Low_complexity Low_complexity 1 22 0 11703 31 15 0 chr9 16849221 16851413 -101011214 - L1PA3 LINE L1 0 6155 3942 10891 44 1 0 chr9 16851413 16852768 -101009859 + L1P LINE L1 1379 2735 -3411 9644 210 21 32 chr9 16852765 16853794 -101008833 - L1MB2 LINE L1 -567 5852 4813 * 2174 107 7 0 chr9 16853794 16854093 -101008534 - AluSp SINE Alu -12 301 1 9644 210 21 32 chr9 16854093 16855904 -101006723 - L1MB2 LINE L1 -1606 4813 3054 7468 126 42 16 chr9 16855916 16857151 -101005476 - L1MB2 LINE L1 -5100 1284 18 180 406 23 8 chr9 16857294 16857427 -101005200 - L2 LINE L2 -693 2621 2487 381 75 0 0 chr9 16859496 16859549 -101003078 + (TTCA)n Simple_repeat Simple_repeat 2 54 0 285 330 18 18 chr9 16859550 16859662 -101002965 - L2 LINE L2 -10 3262 3151 572 137 46 77 chr9 16859665 16859836 -101002791 + MER3 DNA MER1_type 1 209 0 423 0 0 0 chr9 16859914 16859961 -101002666 + (TTATA)n Simple_repeat Simple_repeat 1 47 0 332 299 89 32 chr9 16859971 16860128 -101002499 - L2 LINE L2 -215 3057 2892 449 276 9 19 chr9 16861678 16861783 -101000844 + L2 LINE L2 3210 3313 0 325 285 15 51 chr9 16863165 16863302 -100999325 - L1ME4a LINE L1 -5 6116 5985 1379 213 38 13 chr9 16863325 16863639 -100998988 + MER58B DNA MER1_type 20 341 0 303 298 85 28 chr9 16863649 16863790 -100998837 - L1ME4a LINE L1 -262 5859 5711 302 279 116 8 chr9 16863802 16863931 -100998696 - L1ME4a LINE L1 -484 5637 5495 210 191 0 0 chr9 16864289 16864336 -100998291 + (TA)n Simple_repeat Simple_repeat 2 48 0 1938 53 16 0 chr9 16864491 16864737 -100997890 + L1PA4 LINE L1 5905 6154 -1 641 312 85 16 chr9 16864779 16865096 -100997531 - L1MC/D LINE L1 -2096 5712 5374 1431 249 57 23 chr9 16865145 16865598 -100997029 + MLT1J LTR MaLR 1 503 -8 2122 107 0 7 chr9 16866170 16866461 -100996166 - AluSq SINE Alu -24 289 1 666 298 54 16 chr9 16866803 16867045 -100995582 + MIR SINE MIR 12 262 0 629 294 46 16 chr9 16867108 16867302 -100995325 - MIR SINE MIR -43 219 20 233 319 163 31 chr9 16867411 16867699 -100994928 - L2 LINE L2 0 3313 2988 239 279 0 0 chr9 16867839 16867900 -100994727 - MLT1H LTR MaLR -488 61 1 209 205 0 60 chr9 16868294 16868411 -100994216 + (TATATG)n Simple_repeat Simple_repeat 2 111 0 234 276 270 33 chr9 16868995 16869147 -100993480 - MIR3 SINE MIR 0 208 21 2093 100 30 23 chr9 16869947 16870246 -100992381 - AluSx SINE Alu -11 301 1 954 124 78 60 chr9 16872216 16872433 -100990194 + L1PA16 LINE L1 5944 6164 -2 779 161 0 0 chr9 16876349 16876473 -100986154 - FLAM_A SINE Alu -6 127 4 271 271 115 60 chr9 16876525 16876743 -100985884 - MIR SINE MIR -26 236 7 21 0 0 0 chr9 16876781 16876802 -100985825 + AT_rich Low_complexity Low_complexity 1 21 0 1326 176 33 61 chr9 16877177 16877625 -100985002 + MLT1D LTR MaLR 1 505 0 39 38 0 0 chr9 16878053 16878106 -100984521 + AT_rich Low_complexity Low_complexity 1 53 0 181 250 0 42 chr9 16879150 16879198 -100983429 + L3b LINE CR1 1362 1407 -176 1824 199 31 16 chr9 16880124 16880577 -100982050 - L1MB7 LINE L1 0 6184 5725 2876 221 31 17 chr9 16880577 16881347 -100981280 - L1M4 LINE L1 -1872 4274 3491 364 55 0 0 chr9 16881358 16881413 -100981214 - L1MB3 LINE L1 -2 6181 6127 1283 219 55 77 chr9 16882183 16882246 -100980381 + MLT1A2 LTR MaLR 1 64 -310 1803 116 116 33 chr9 16882246 16882582 -100980045 - THE1B LTR MaLR 0 364 1 1283 219 55 77 chr9 16882582 16882897 -100979730 + MLT1A2 LTR MaLR 64 371 -3 450 261 98 20 chr9 16883712 16883865 -100978762 + MIR SINE MIR 71 235 -27 270 0 0 0 chr9 16884888 16884918 -100977709 + (TG)n Simple_repeat Simple_repeat 1 30 0 450 0 0 0 chr9 16885221 16885271 -100977356 + (TG)n Simple_repeat Simple_repeat 2 51 0 228 244 0 0 chr9 16885898 16885943 -100976684 + (TATG)n Simple_repeat Simple_repeat 3 47 0 346 303 161 11 chr9 16885946 16886220 -100976407 + L1ME4a LINE L1 5583 5897 -224 337 214 182 13 chr9 16886436 16886595 -100976032 + L1ME4a LINE L1 5935 6120 -1 386 292 125 0 chr9 16886940 16887084 -100975543 - MIR SINE MIR -35 227 66 525 298 73 49 chr9 16888355 16888755 -100973872 + L1MC/D LINE L1 4877 5289 -857 1037 115 13 6 chr9 16888755 16888912 -100973715 + L1PA15 LINE L1 6006 6163 -2 297 282 73 8 chr9 16888980 16889104 -100973523 + L1MC/D LINE L1 5652 5783 -459 4793 107 7 16 chr9 16889172 16889908 -100972719 - Tigger4(Zombi) DNA MER2_type 0 2731 2003 41498 63 4 4 chr9 16889921 16896062 -100966565 + L1PA5 LINE L1 11 6145 -9 13033 121 18 20 chr9 16896062 16898084 -100964543 - Tigger4(Zombi) DNA MER2_type -710 2021 4 29 0 0 0 chr9 16898265 16898294 -100964333 + AT_rich Low_complexity Low_complexity 1 29 0 827 316 37 39 chr9 16898469 16898960 -100963667 - LTR16B LTR ERVL 0 464 3 990 307 69 41 chr9 16898965 16900073 -100962554 - ERVL LTR ERVL -18 5325 4001 340 322 0 0 chr9 16900075 16900162 -100962465 - ERVL LTR ERVL -1477 4287 4201 941 198 6 0 chr9 16900539 16900706 -100961921 + FRAM SINE Alu 4 171 -5 627 209 12 6 chr9 16900709 16900881 -100961746 + GA-rich Low_complexity Low_complexity 4 176 0 186 43 0 0 chr9 16900888 16900911 -100961716 + (GGGA)n Simple_repeat Simple_repeat 4 26 0 302 205 90 41 chr9 16901955 16902077 -100960550 - L2 LINE L2 -1899 1415 1288 204 40 0 0 chr9 16902866 16902891 -100959736 + (TG)n Simple_repeat Simple_repeat 2 26 0 6969 130 54 31 chr9 16903026 16903302 -100959325 + Tigger3b DNA MER2_type 1 269 -2759 1819 154 37 3 chr9 16903302 16903601 -100959026 - AluJo SINE Alu -3 309 1 6969 130 54 31 chr9 16903601 16904526 -100958101 + Tigger3b DNA MER2_type 269 1230 -1 586 206 56 56 chr9 16904642 16904802 -100957825 + MIR3 SINE MIR 48 207 -1 4352 154 44 72 chr9 16906481 16906977 -100955650 - L1MB8 LINE L1 -9 6169 5661 1399 165 91 77 chr9 16906977 16907316 -100955311 - MER2 DNA MER2_type 0 344 1 4352 154 44 72 chr9 16907316 16907419 -100955208 - L1MB8 LINE L1 -517 5661 5557 1511 134 0 9 chr9 16907419 16907636 -100954991 - AluSx SINE Alu -97 215 1 4352 154 44 72 chr9 16907636 16907905 -100954722 - L1MB8 LINE L1 -621 5557 5282 7923 39 1 0 chr9 16907905 16909379 -100953248 - L1PA4 LINE L1 0 6155 4681 4352 154 44 72 chr9 16909379 16909838 -100952789 - L1MB8 LINE L1 -896 5282 4867 42 20 0 0 chr9 16910500 16910549 -100952078 + AT_rich Low_complexity Low_complexity 1 49 0 243 261 43 0 chr9 16912399 16912468 -100950159 + MLT1J LTR MaLR 1 72 -439 262 318 133 7 chr9 16913137 16913288 -100949339 - L2 LINE L2 0 3272 3103 463 307 159 45 chr9 16913707 16914287 -100948340 - HAL1 LINE L1 -1032 1475 830 8795 120 23 15 chr9 16915116 16916503 -100946124 - Tigger1 DNA MER2_type 0 2418 963 743 62 0 10 chr9 16916503 16916600 -100946027 + L1PA4 LINE L1 6056 6151 -4 8795 120 23 15 chr9 16916600 16916891 -100945736 - Tigger1 DNA MER2_type -1455 963 676 3679 145 42 0 chr9 16917089 16917683 -100944944 - L1MB3 LINE L1 -7 6176 5558 212 241 0 19 chr9 16917850 16917904 -100944723 + L2 LINE L2 3219 3271 -1 27 62 0 0 chr9 16918588 16918636 -100943991 + AT_rich Low_complexity Low_complexity 1 48 0 497 315 60 13 chr9 16918862 16919176 -100943451 - L1ME LINE L1 -341 5780 5452 202 200 0 0 chr9 16921036 16921076 -100941551 + GA-rich Low_complexity Low_complexity 1 40 0 457 200 0 90 chr9 16921454 16921538 -100941089 - Tigger7 DNA MER2_type -1 2486 2411 1934 146 79 3 chr9 16921538 16921868 -100940759 + MER46B DNA MER2_type 3 232 -4 457 200 0 90 chr9 16921868 16921883 -100940744 - Tigger7 DNA MER2_type -76 2411 2396 * 2797 193 31 14 chr9 16921882 16922394 -100940233 - Tigger7 DNA MER2_type -212 521 1 2184 105 0 7 chr9 16922566 16922860 -100939767 - AluSc SINE Alu -17 292 1 496 300 122 22 chr9 16922969 16923199 -100939428 + MIR SINE MIR 9 261 -1 734 300 32 8 chr9 16923225 16923472 -100939155 + MLT1I LTR MaLR 157 409 0 501 163 35 0 chr9 16924572 16924658 -100937969 - AluSg/x SINE Alu -16 294 206 2327 168 98 13 chr9 16925323 16925770 -100936857 + MLT1D LTR MaLR 21 505 0 277 224 35 0 chr9 16926364 16926422 -100936205 + MER81 DNA DNA 3 62 -52 250 233 22 78 chr9 16926435 16926465 -100936162 - MER81 DNA DNA -29 85 55 3448 183 17 19 chr9 16926465 16926634 -100935993 + L1MB5 LINE L1 5525 5693 -481 1921 123 0 57 chr9 16926634 16926959 -100935668 + AluSx SINE Alu 1 308 0 3448 183 17 19 chr9 16926959 16927432 -100935195 + L1MB5 LINE L1 5693 6167 -7 250 233 22 78 chr9 16927432 16927491 -100935136 - MER81 DNA DNA -59 55 1 21 0 0 0 chr9 16928935 16928956 -100933671 + AT_rich Low_complexity Low_complexity 1 21 0 220 309 191 0 chr9 16929485 16929579 -100933048 - L2 LINE L2 -229 3043 2932 356 204 75 0 chr9 16929968 16930061 -100932566 - MER53 DNA DNA -89 100 1 1223 239 145 12 chr9 16930121 16930527 -100932100 + LTR16B LTR ERVL 1 460 -4 553 237 75 16 chr9 16930859 16931045 -100931582 + MER117 DNA MER1_type 1 197 0 1770 174 37 29 chr9 16931345 16931696 -100930931 - MLT1A1 LTR MaLR -11 354 1 977 181 0 0 chr9 16934099 16934259 -100928368 - FRAM SINE Alu -19 157 1 3728 102 13 17 chr9 16934706 16935236 -100927391 + MER1A DNA MER1_type 2 529 0 180 260 20 0 chr9 16935273 16935323 -100927304 - MIR SINE MIR -132 130 80 228 246 35 0 chr9 16937245 16937302 -100925325 - L2 LINE L2 -9 3304 3246 1370 274 59 71 chr9 16937803 16937837 -100924790 + L1MEd LINE L1 804 837 -5693 2411 81 0 0 chr9 16937837 16938145 -100924482 + AluY SINE Alu 1 308 -3 1370 274 59 71 chr9 16938145 16938303 -100924324 + L1MEd LINE L1 837 995 -5535 2980 106 84 4 chr9 16938303 16938767 -100923860 + L1MA5 LINE L1 5799 6299 -1 1370 274 59 71 chr9 16938767 16939448 -100923179 + L1MEd LINE L1 995 1668 -4862 267 286 30 38 chr9 16939540 16939673 -100922954 + HAL1 LINE L1 1483 1614 -893 254 270 125 13 chr9 16940100 16940252 -100922375 + L1MEd LINE L1 2436 2604 -3936 250 250 0 0 chr9 16940291 16940359 -100922268 + A-rich Low_complexity Low_complexity 1 68 0 311 287 18 61 chr9 16941155 16941319 -100921308 - MLT1J LTR MaLR -280 231 75 182 228 281 0 chr9 16941486 16941543 -100921084 + MIR SINE MIR 106 178 -84 230 282 58 42 chr9 16943469 16943606 -100919021 - MIR SINE MIR -65 143 58 354 278 42 35 chr9 16943944 16944088 -100918539 + MIR SINE MIR 87 231 -31 199 288 17 0 chr9 16944060 16944119 -100918508 + L2 LINE L2 3251 3310 -3 * 23 0 0 0 chr9 16944733 16944756 -100917871 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr9 16945997 16946022 -100916605 + AT_rich Low_complexity Low_complexity 1 25 0 792 208 17 0 chr9 16946628 16946806 -100915821 - LTR16C LTR ERVL -2 489 309 1041 195 13 66 chr9 16946818 16947044 -100915583 - MER20 DNA MER1_type -3 216 3 314 250 244 0 chr9 16947419 16947587 -100915040 - MIR SINE MIR -6 256 48 765 314 117 47 chr9 16947897 16947997 -100914630 + L2 LINE L2 1870 1962 -1352 2511 94 39 36 chr9 16947997 16948360 -100914267 + THE1B LTR MaLR 1 364 0 765 314 117 47 chr9 16948360 16949000 -100913627 + L2 LINE L2 1962 2662 -652 354 257 208 24 chr9 16949145 16949328 -100913299 + MIR SINE MIR 34 262 0 344 291 0 64 chr9 16950018 16950128 -100912499 + MIR SINE MIR 12 114 -148 575 163 116 47 chr9 16950191 16950320 -100912307 + MIR SINE MIR 104 241 -21 10252 138 27 25 chr9 16950393 16951362 -100911265 + Ricksha_c DNA DNA 1 967 -2287 2185 124 7 0 chr9 16951362 16951661 -100910966 - AluSx SINE Alu -11 301 1 10252 138 27 25 chr9 16951661 16952699 -100909928 + Ricksha_c DNA DNA 967 2008 -38 404 280 80 11 chr9 16952951 16953126 -100909501 + LTR33 LTR ERVL 305 491 -30 194 245 113 0 chr9 16953135 16953188 -100909439 - MIR SINE MIR -201 61 3 2629 93 28 0 chr9 16953254 16953608 -100909019 - THE1B LTR MaLR 0 364 1 330 314 65 6 chr9 16954605 16954774 -100907853 - MIR3 SINE MIR -6 202 24 251 261 34 12 chr9 16954847 16954974 -100907653 + MIR SINE MIR 2 130 -78 497 209 219 71 chr9 16956439 16956860 -100905767 - L2 LINE L2 -655 2659 2177 361 279 117 41 chr9 16957437 16957727 -100904900 + L1ME4a LINE L1 5793 6104 -17 1048 201 5 29 chr9 16957731 16957940 -100904687 + MER3 DNA MER1_type 1 204 -5 2076 129 0 10 chr9 16957945 16958262 -100904365 - AluSx SINE Alu 0 312 1 200 263 62 38 chr9 16958659 16958739 -100903888 - MIR SINE MIR -96 166 85 233 70 70 18 chr9 16958908 16958965 -100903662 + T-rich Low_complexity Low_complexity 2 61 0 180 0 0 0 chr9 16959527 16959547 -100903080 + (TAA)n Simple_repeat Simple_repeat 2 21 0 189 204 61 20 chr9 16960751 16960800 -100901827 - MIR SINE MIR -100 108 58 2950 16 0 0 chr9 16960970 16961288 -100901339 - AluYb8 SINE Alu 0 318 1 314 320 49 0 chr9 16962549 16962671 -100899956 + MIR SINE MIR 16 143 -65 331 210 62 0 chr9 16962753 16962834 -100899793 + MIR3 SINE MIR 118 203 -5 21 36 0 0 chr9 16962957 16962985 -100899642 + AT_rich Low_complexity Low_complexity 1 28 0 642 244 23 6 chr9 16963116 16963288 -100899339 - MIR SINE MIR 0 262 88 441 200 0 0 chr9 16963367 16963442 -100899185 + MER63 DNA MER1_type 677 751 -311 197 32 0 32 chr9 16963648 16963679 -100898948 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2093 142 3 3 chr9 16963718 16964048 -100898579 + L1PA15 LINE L1 5836 6165 0 252 100 0 0 chr9 16964070 16964110 -100898517 + (TTCA)n Simple_repeat Simple_repeat 2 41 0 205 308 131 0 chr9 16964463 16964570 -100898057 + L2 LINE L2 3193 3313 0 313 294 0 11 chr9 16965264 16965356 -100897271 - MIR SINE MIR -61 147 57 261 241 314 15 chr9 16967185 16967274 -100895353 + MIR SINE MIR 47 108 -154 323 44 22 0 chr9 16967274 16967319 -100895308 + (TG)n Simple_repeat Simple_repeat 1 46 0 261 241 314 15 chr9 16967319 16967366 -100895261 + MIR SINE MIR 108 224 -38 8044 14 0 0 chr9 16967935 16969425 -100893202 - L1PA2 LINE L1 0 6155 4666 4242 23 0 0 chr9 16969427 16969912 -100892715 + L1P LINE L1 4136 4620 -1526 511 280 156 19 chr9 16969967 16970178 -100892449 + MIR SINE MIR 2 241 -21 213 231 0 0 chr9 16970879 16970918 -100891709 + (TG)n Simple_repeat Simple_repeat 1 39 0 201 74 0 0 chr9 16971467 16971494 -100891133 + (TCTG)n Simple_repeat Simple_repeat 1 27 0 1046 254 68 34 chr9 16972407 16972761 -100889866 + MLT1K LTR MaLR 190 555 -33 202 157 0 78 chr9 16974457 16974508 -100888119 + MIR SINE MIR 74 121 -87 943 259 136 93 chr9 16974833 16975874 -100886753 - HAL1 LINE L1 -1420 1087 2 394 368 108 19 chr9 16975948 16976425 -100886202 - L2 LINE L2 -49 3223 2702 505 240 226 19 chr9 16977235 16977318 -100885309 - MER112 DNA MER1_type -1 259 194 447 68 0 0 chr9 16977318 16977377 -100885250 + (CATAG)n Simple_repeat Simple_repeat 2 60 0 505 240 226 19 chr9 16977377 16977501 -100885126 - MER112 DNA MER1_type -66 194 9 324 264 18 80 chr9 16978816 16978979 -100883648 + MLT1H LTR MaLR 23 175 -374 1314 152 134 11 chr9 16979381 16979530 -100883097 + L1MA9 LINE L1 6003 6132 -180 408 20 0 0 chr9 16979530 16979579 -100883048 + (CA)n Simple_repeat Simple_repeat 2 50 0 1314 152 134 11 chr9 16979579 16979705 -100882922 + L1MA9 LINE L1 6132 6312 0 1879 166 44 121 chr9 16980723 16981228 -100881399 + MLT1C LTR MaLR 1 466 -1 657 264 34 6 chr9 16981287 16981465 -100881162 - MIR SINE MIR -21 241 59 317 318 8 24 chr9 16981597 16981723 -100880904 - L3 LINE CR1 -400 1177 1054 247 280 13 13 chr9 16982644 16982719 -100879908 + MLT1L LTR MaLR 8 82 -533 242 303 44 61 chr9 16984674 16984874 -100877753 - MIR SINE MIR -46 216 17 301 345 0 0 chr9 16986194 16986281 -100876346 - MIR3 SINE MIR -3 205 119 328 289 89 37 chr9 16986310 16986445 -100876182 + MIR3 SINE MIR 3 144 -64 245 248 64 40 chr9 16986699 16986824 -100875803 - MLT2E LTR ERVL 0 628 501 324 217 48 24 chr9 16987034 16987117 -100875510 - MLT2E LTR ERVL -509 119 35 11563 94 42 25 chr9 16987373 16987786 -100874841 - L1P LINE L1 -2427 3719 3314 1941 118 0 0 chr9 16987786 16988040 -100874587 - AluSg SINE Alu -16 294 41 11563 94 42 25 chr9 16988040 16989435 -100873192 - L1P LINE L1 -2832 3314 1881 9993 82 10 0 chr9 16989433 16990778 -100871849 + L1PA7 LINE L1 3726 5084 -1062 * 2759 72 0 0 chr9 16990774 16991136 -100871491 - L1PA7 LINE L1 -915 5231 4870 * 6768 60 23 0 chr9 16991136 16992048 -100870579 + L1PA7 LINE L1 5219 6150 -4 200 244 77 64 chr9 16993751 16993829 -100868798 - MER5A DNA MER1_type -3 186 108 181 288 17 0 chr9 16995960 16996019 -100866608 - L2 LINE L2 -795 2519 2460 242 97 0 0 chr9 16996289 16996320 -100866307 - MSTA LTR MaLR -393 35 5 * 1849 126 160 9 chr9 16996309 16996659 -100865968 + MSTA LTR MaLR 26 428 0 298 194 10 10 chr9 16996928 16997031 -100865596 + CT-rich Low_complexity Low_complexity 1 103 0 321 300 18 9 chr9 16997147 16997257 -100865370 + MIR SINE MIR 21 131 -131 239 221 58 0 chr9 16997311 16997397 -100865230 - L1MC4 LINE L1 -1336 6706 6616 288 305 19 19 chr9 16998024 16998129 -100864498 + LTR33 LTR ERVL 107 211 -310 632 258 43 48 chr9 16998186 16998395 -100864232 + LTR33 LTR ERVL 314 521 0 304 286 43 43 chr9 16998906 16999046 -100863581 - MIR SINE MIR -74 188 49 332 282 38 23 chr9 16999600 16999731 -100862896 + MIR SINE MIR 51 183 -79 210 191 0 0 chr9 16999807 16999849 -100862778 + (CAT)n Simple_repeat Simple_repeat 3 44 0 201 222 67 56 chr9 16999951 17000041 -100862586 + MIR SINE MIR 61 151 -111 751 142 86 25 chr9 17002697 17002859 -100859768 - MER53 DNA DNA 0 189 18 2339 204 56 68 chr9 17002866 17003523 -100859104 + MLT1E1 LTR MaLR 6 654 0 183 162 0 0 chr9 17003963 17004000 -100858627 + G-rich Low_complexity Low_complexity 4 40 0 280 312 24 24 chr9 17004763 17004930 -100857697 + MIR SINE MIR 13 139 -69 399 130 22 22 chr9 17006088 17006180 -100856447 + (TCCA)n Simple_repeat Simple_repeat 1 92 0 505 298 33 13 chr9 17006214 17006365 -100856262 - L2 LINE L2 -1 3271 3118 431 147 0 0 chr9 17008482 17008550 -100854077 - L1MC4 LINE L1 0 8042 7975 351 139 42 14 chr9 17008550 17008622 -100854005 - MER106B DNA MER1_type 0 1059 986 1010 148 13 0 chr9 17008631 17008786 -100853841 - FRAM SINE Alu -20 156 1 522 243 54 7 chr9 17008791 17008939 -100853688 - MER106A DNA MER1_type -80 156 2 316 212 0 0 chr9 17008943 17009009 -100853618 - L1MC4 LINE L1 -63 7979 7914 180 273 0 0 chr9 17009028 17009094 -100853533 + (CATATA)n Simple_repeat Simple_repeat 6 71 0 445 198 9 36 chr9 17009102 17009213 -100853414 - L1MC4 LINE L1 -128 7914 7807 186 389 37 9 chr9 17009234 17009342 -100853285 + L2 LINE L2 3176 3286 -27 293 276 40 0 chr9 17010162 17010238 -100852389 - MER2 DNA MER2_type 0 345 267 768 145 26 0 chr9 17010259 17010376 -100852251 + MSTB LTR MaLR 254 373 -53 1006 124 62 46 chr9 17010415 17010609 -100852018 - MER2 DNA MER2_type -134 211 15 1916 126 4 0 chr9 17010932 17011210 -100851417 + AluSx SINE Alu 5 283 -29 307 267 22 22 chr9 17011221 17011311 -100851316 - L1MC4 LINE L1 -1339 6703 6614 203 125 25 0 chr9 17011311 17011351 -100851276 + (CA)n Simple_repeat Simple_repeat 2 42 0 365 341 54 18 chr9 17011532 17011699 -100850928 - MIR3 SINE MIR -7 201 29 303 357 83 0 chr9 17012746 17012914 -100849713 - HERVL LTR ERVL -758 4896 4715 970 141 0 0 chr9 17013028 17013177 -100849450 + FRAM SINE Alu 1 40 0 608 308 104 39 chr9 17013179 17013536 -100849091 - HERVL LTR ERVL -885 4600 4221 1014 314 84 35 chr9 17013556 17014246 -100848381 - HERVL LTR ERVL -1710 4054 3331 1788 297 73 43 chr9 17014350 17015806 -100846821 + L1ME2 LINE L1 111 1611 -4785 2451 225 126 22 chr9 17015850 17017069 -100845558 + L1ME2 LINE L1 4876 6224 -9 390 361 79 1 chr9 17017089 17017302 -100845325 - HERVL LTR ERVL -2386 3268 3068 2331 141 20 0 chr9 17017304 17017652 -100844975 - THE1B LTR MaLR -2 362 8 1898 147 0 10 chr9 17017759 17018065 -100844562 + AluSx SINE Alu 1 303 -9 1404 197 17 27 chr9 17018084 17018384 -100844243 + AluJo SINE Alu 1 297 -15 1598 347 77 18 chr9 17018386 17019459 -100843168 - HERVL LTR ERVL -2738 3026 1890 965 212 5 5 chr9 17019463 17019647 -100842980 + MER5A DNA MER1_type 6 189 0 286 237 26 0 chr9 17019698 17019772 -100842855 - HERVL LTR ERVL -3666 1819 1743 298 278 67 22 chr9 17020256 17020346 -100842281 + MER101B LTR ERV1 1 94 -476 2168 122 68 6 chr9 17020363 17020716 -100841911 + THE1C LTR MaLR 1 375 0 1600 230 15 4 chr9 17020883 17021260 -100841367 + LTR51 LTR ERV1 228 838 -85 249 198 12 139 chr9 17024012 17024098 -100838529 - L2 LINE L2 0 3272 3198 183 300 0 0 chr9 17024313 17024363 -100838264 + L2 LINE L2 3137 3186 -86 271 176 39 0 chr9 17024433 17024484 -100838143 + MLT1L LTR MaLR 216 268 -347 292 336 26 0 chr9 17024522 17024638 -100837989 + MLT1L LTR MaLR 337 455 -160 232 231 0 22 chr9 17024722 17024813 -100837814 + CT-rich Low_complexity Low_complexity 5 93 0 33 43 0 0 chr9 17026544 17026591 -100836036 + AT_rich Low_complexity Low_complexity 1 47 0 335 204 119 68 chr9 17026778 17026954 -100835673 - L1MC4a LINE L1 -1963 5845 5661 417 269 151 8 chr9 17027989 17028108 -100834519 + MIR3 SINE MIR 20 155 -53 225 291 58 0 chr9 17028198 17028284 -100834343 - MIR SINE MIR -67 141 51 203 360 45 9 chr9 17028275 17028386 -100834241 + L2 LINE L2 2958 3072 -200 * 317 324 28 64 chr9 17028603 17028853 -100833774 + L2 LINE L2 2835 3075 -197 453 229 168 29 chr9 17028971 17029153 -100833474 - MLT1J LTR MaLR -40 575 289 245 250 94 0 chr9 17029398 17029462 -100833165 + MER5C DNA MER1_type 55 124 -200 973 214 107 85 chr9 17030120 17030522 -100832105 - MLT1C LTR MaLR -5 462 52 460 213 74 0 chr9 17030591 17030713 -100831914 - LTR16A LTR ERVL -9 441 311 266 270 0 27 chr9 17032041 17032115 -100830512 + CT-rich Low_complexity Low_complexity 5 76 0 187 370 83 22 chr9 17032847 17033028 -100829599 - MIR SINE MIR -70 192 1 633 296 40 26 chr9 17034084 17034316 -100828311 + MIR SINE MIR 23 261 -1 472 271 164 7 chr9 17034328 17034468 -100828159 - L2 LINE L2 -1 3271 3110 590 286 7 0 chr9 17034576 17034716 -100827911 + L2 LINE L2 3169 3309 -4 348 244 120 49 chr9 17035094 17035346 -100827281 - MLT1J1 LTR MaLR -191 259 1 462 272 104 63 chr9 17035705 17036040 -100826587 + MLT1J1 LTR MaLR 72 420 -26 2454 218 59 26 chr9 17036164 17036737 -100825890 + L1ME2 LINE L1 5526 6122 -42 2291 78 3 0 chr9 17036737 17037030 -100825597 + AluSp SINE Alu 1 294 -19 2454 218 59 26 chr9 17037030 17037066 -100825561 + L1ME2 LINE L1 6122 6155 -9 449 265 70 11 chr9 17038882 17039027 -100823600 + MIR SINE MIR 16 164 -58 559 216 0 0 chr9 17039296 17039398 -100823229 - LTR40a LTR ERVL -415 104 3 711 161 51 0 chr9 17039401 17039519 -100823108 - MER63 DNA MER1_type -86 750 1 270 153 0 0 chr9 17041389 17041448 -100821179 + CT-rich Low_complexity Low_complexity 1 59 0 553 219 182 21 chr9 17042052 17042239 -100820388 - MIR SINE MIR -26 236 20 414 0 0 0 chr9 17042923 17042969 -100819658 + (TG)n Simple_repeat Simple_repeat 2 47 0 246 389 8 8 chr9 17043337 17043463 -100819164 + MIR SINE MIR 22 147 -61 4735 141 31 7 chr9 17043467 17044282 -100818345 + L1MA8 LINE L1 5455 6288 -3 1977 155 63 39 chr9 17045350 17045765 -100816862 - MLT2D LTR ERVL -13 507 6 604 290 13 0 chr9 17045769 17045924 -100816703 - MIR SINE MIR -59 203 47 184 274 16 32 chr9 17048123 17048185 -100814442 - MIR3 SINE MIR -44 164 104 1846 155 0 19 chr9 17048484 17048793 -100813834 - AluJo SINE Alu -9 303 1 3027 188 42 20 chr9 17048879 17049834 -100812793 + L1M1 LINE L1 13 1100 -6465 5579 101 4 18 chr9 17050186 17051006 -100811621 - L1MA2 LINE L1 -6 6298 5491 874 293 216 5 chr9 17051008 17051519 -100811108 + L2 LINE L2 2703 3312 -1 855 264 90 41 chr9 17052866 17053253 -100809374 - MLT1I LTR MaLR -3 406 1 188 275 99 11 chr9 17053760 17053851 -100808776 + L3b LINE CR1 1363 1461 -122 493 292 71 6 chr9 17053862 17054030 -100808597 + MER5A DNA MER1_type 11 189 0 399 21 0 0 chr9 17056803 17056851 -100805776 + (TG)n Simple_repeat Simple_repeat 2 49 0 447 19 0 0 chr9 17058014 17058066 -100804561 + (TG)n Simple_repeat Simple_repeat 1 52 0 200 189 0 0 chr9 17058382 17058419 -100804208 + (CA)n Simple_repeat Simple_repeat 1 37 0 25 0 0 0 chr9 17058504 17058529 -100804098 + AT_rich Low_complexity Low_complexity 1 25 0 35 63 0 0 chr9 17060123 17060186 -100802441 + AT_rich Low_complexity Low_complexity 1 63 0 468 323 25 108 chr9 17060828 17061190 -100801437 + L2 LINE L2 2939 3270 -2 367 232 87 80 chr9 17061547 17061685 -100800942 - L2 LINE L2 -4 3309 3171 298 248 7 131 chr9 17062243 17062388 -100800239 - MIR SINE MIR -111 151 25 261 75 0 0 chr9 17062600 17062640 -100799987 + (CA)n Simple_repeat Simple_repeat 1 40 0 258 323 60 8 chr9 17063568 17063701 -100798926 - MIR SINE MIR -5 257 118 351 251 179 17 chr9 17063708 17063887 -100798740 - L2 LINE L2 0 3313 3106 574 295 40 0 chr9 17063908 17064132 -100798495 - L2 LINE L2 -342 2972 2740 590 277 100 13 chr9 17064283 17064514 -100798113 - MLT1J LTR MaLR -252 259 9 1217 291 18 52 chr9 17064520 17065080 -100797547 - L2 LINE L2 -573 2741 2201 1827 191 135 12 chr9 17065994 17066408 -100796219 + MLT1C LTR MaLR 1 465 -2 2761 132 21 7 chr9 17066869 17067293 -100795334 - MSTB1 LTR MaLR -2 430 1 579 215 126 16 chr9 17067743 17067934 -100794693 - MER102a DNA MER1_type -27 303 92 5724 145 41 36 chr9 17067934 17069105 -100793522 + L1MC2 LINE L1 5161 6326 -18 2395 96 0 0 chr9 17069106 17069407 -100793220 + AluSg SINE Alu 1 301 -9 288 208 123 85 chr9 17069409 17069539 -100793088 - MER102a DNA MER1_type -195 135 1 454 261 42 8 chr9 17069622 17069741 -100792886 - MIR3 SINE MIR -54 154 32 201 357 39 8 chr9 17070326 17070455 -100792172 - MIR SINE MIR -54 208 76 590 293 38 14 chr9 17070854 17071097 -100791530 - MIR SINE MIR -15 247 2 213 264 99 22 chr9 17071097 17071166 -100791461 - MIR SINE MIR -32 230 155 505 235 129 18 chr9 17071169 17071339 -100791288 + MIR SINE MIR 15 203 -59 350 185 0 25 chr9 17071349 17071430 -100791197 - MIR SINE MIR -113 149 71 207 167 67 67 chr9 17072628 17072688 -100789939 - MIR3 SINE MIR -22 186 127 201 352 0 11 chr9 17072857 17072945 -100789682 + GA-rich Low_complexity Low_complexity 4 90 0 653 279 4 51 chr9 17074010 17074247 -100788380 - MIR SINE MIR 0 262 37 257 270 130 0 chr9 17074340 17074440 -100788187 - MIR SINE MIR -109 153 41 341 242 53 0 chr9 17075912 17076007 -100786620 - L1MA9 LINE L1 -602 5703 5604 * 498 147 0 21 chr9 17075993 17076076 -100786551 + L1MA9 LINE L1 5701 5783 -508 189 0 0 0 chr9 17076076 17076097 -100786530 + (TG)n Simple_repeat Simple_repeat 2 22 0 498 147 0 21 chr9 17076097 17076108 -100786519 + L1MA9 LINE L1 5783 5793 -498 243 154 36 18 chr9 17076108 17076218 -100786409 + (TA)n Simple_repeat Simple_repeat 1 112 0 2240 176 52 17 chr9 17076235 17076703 -100785924 + L1MA9 LINE L1 5783 6274 -38 723 245 187 30 chr9 17076849 17077180 -100785447 - MLT1K LTR MaLR -68 520 138 452 321 70 56 chr9 17077777 17078387 -100784240 - L1MDa LINE L1 -2799 3741 3123 252 299 36 21 chr9 17078678 17078872 -100783755 - L1MDa LINE L1 -3747 2793 2597 303 276 165 0 chr9 17078874 17079044 -100783583 - L1MDa LINE L1 -3923 2617 2420 454 329 56 48 chr9 17079914 17080418 -100782209 - HAL1 LINE L1 -1070 1437 930 2303 82 0 0 chr9 17080703 17080994 -100781633 - AluY SINE Alu -20 291 1 1859 143 40 24 chr9 17081710 17082038 -100780589 + MER44D DNA MER2_type 3 605 -4 298 154 0 19 chr9 17082098 17082150 -100780477 + MLT1L LTR MaLR 135 185 -430 296 277 21 64 chr9 17082270 17082364 -100780263 + MLT1L LTR MaLR 341 430 -185 372 94 0 0 chr9 17082807 17082860 -100779767 + (CTG)n Simple_repeat Simple_repeat 1 53 0 301 328 40 0 chr9 17083146 17083271 -100779356 - MIR SINE MIR -15 247 118 936 101 0 0 chr9 17084227 17084346 -100778281 - AluSq/x SINE Alu -193 119 1 254 191 0 15 chr9 17084905 17084973 -100777654 + GA-rich Low_complexity Low_complexity 2 68 0 212 95 71 0 chr9 17086069 17086111 -100776516 + (ATATG)n Simple_repeat Simple_repeat 5 49 0 340 319 55 12 chr9 17086126 17086289 -100776338 - MIR SINE MIR -45 217 48 2629 200 76 0 chr9 17086663 17087174 -100775453 - MLT1F1 LTR MaLR 0 567 18 1618 188 65 3 chr9 17087184 17087477 -100775150 - AluJo SINE Alu -1 311 1 446 279 31 0 chr9 17087735 17087864 -100774763 - MIR SINE MIR -4 258 126 241 295 25 82 chr9 17087907 17088029 -100774598 - L2 LINE L2 -166 3106 2992 9176 38 0 0 chr9 17088745 17090600 -100772027 - L1PA4 LINE L1 0 6155 4299 1251 110 31 0 chr9 17091622 17091813 -100770814 + L1PA8 LINE L1 5974 6170 -2 2088 137 3 0 chr9 17092041 17092347 -100770280 - AluJb SINE Alu -5 307 1 557 270 181 0 chr9 17092470 17092674 -100769953 - MIR SINE MIR -13 249 9 198 143 0 0 chr9 17093070 17093105 -100769522 + (TG)n Simple_repeat Simple_repeat 2 36 0 327 284 16 24 chr9 17093926 17094053 -100768574 + CT-rich Low_complexity Low_complexity 1 126 0 311 318 65 61 chr9 17095791 17096033 -100766594 - MIR SINE MIR -12 250 10 24 0 0 0 chr9 17096090 17096114 -100766513 + AT_rich Low_complexity Low_complexity 1 24 0 315 149 287 11 chr9 17096349 17096443 -100766184 + MER117 DNA MER1_type 46 165 -32 226 243 40 14 chr9 17096495 17096569 -100766058 - MIR3 SINE MIR -48 160 85 226 268 153 38 chr9 17096712 17096869 -100765758 + MIR SINE MIR 37 211 -51 207 0 0 0 chr9 17099282 17099305 -100763322 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 461 274 93 30 chr9 17099939 17100140 -100762487 - MIR SINE MIR -41 221 9 21 36 0 0 chr9 17100416 17100444 -100762183 + AT_rich Low_complexity Low_complexity 1 28 0 29 0 0 0 chr9 17100496 17100525 -100762102 + AT_rich Low_complexity Low_complexity 1 29 0 2469 82 3 0 chr9 17101317 17101620 -100761007 - AluY SINE Alu -7 304 1 268 161 54 0 chr9 17102688 17102744 -100759883 - MIR SINE MIR -64 144 86 262 320 8 16 chr9 17103345 17103467 -100759160 + MER103 DNA DNA 28 148 -18 314 214 112 31 chr9 17103936 17104034 -100758593 + MIR SINE MIR 36 141 -67 181 277 60 48 chr9 17106246 17106329 -100756298 + MIR SINE MIR 8 91 -171 1439 194 64 53 chr9 17107391 17107752 -100754875 - MLT1A1 LTR MaLR 0 365 1 195 42 0 0 chr9 17109640 17109664 -100752963 + (TTG)n Simple_repeat Simple_repeat 2 25 0 2033 130 0 11 chr9 17109664 17109972 -100752655 - AluSx SINE Alu 0 305 1 4359 269 72 44 chr9 17110255 17113007 -100749620 - L1ME3A LINE L1 -5 6165 3325 184 301 115 27 chr9 17113664 17113847 -100748780 - L2 LINE L2 -1226 2088 1890 233 291 149 29 chr9 17113952 17114193 -100748434 - L2 LINE L2 -2 3311 3042 647 275 77 13 chr9 17115733 17115966 -100746661 - MIR SINE MIR 0 262 15 180 0 0 0 chr9 17116050 17116070 -100746557 + (T)n Simple_repeat Simple_repeat 1 20 0 269 285 22 66 chr9 17117790 17117927 -100744700 - MLT1K LTR MaLR -2 586 456 185 340 28 0 chr9 17118265 17118371 -100744256 - L2 LINE L2 -28 3285 3177 294 29 0 0 chr9 17118734 17118769 -100743858 + (TG)n Simple_repeat Simple_repeat 2 36 0 198 189 0 0 chr9 17118986 17119023 -100743604 - L2 LINE L2 -8 3305 3269 180 0 0 0 chr9 17120702 17120722 -100741905 + (A)n Simple_repeat Simple_repeat 1 20 0 369 291 111 6 chr9 17120981 17121153 -100741474 - MIR SINE MIR -14 248 59 2451 186 32 18 chr9 17121330 17121512 -100741115 + L1MB1 LINE L1 5649 5827 -362 2451 89 10 0 chr9 17121512 17121816 -100740811 - AluSg SINE Alu -3 307 1 2451 186 32 18 chr9 17121816 17122129 -100740498 + L1MB1 LINE L1 5827 6151 -38 2073 113 4 0 chr9 17122150 17122424 -100740203 + AluSx SINE Alu 1 275 -37 215 30 0 30 chr9 17122428 17122461 -100740166 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 456 337 50 20 chr9 17122601 17122803 -100739824 - L3 LINE CR1 -2 1575 1368 1460 221 51 3 chr9 17124158 17124529 -100738098 - MER97a DNA MER1_type? 0 894 506 32381 106 16 52 chr9 17124563 17130961 -100731666 + L1PA7 LINE L1 12 6170 0 762 257 87 74 chr9 17130961 17131327 -100731300 - MER97b DNA MER1_type? -561 492 122 551 256 109 14 chr9 17133071 17133282 -100729345 - L2 LINE L2 -2 3311 3081 1816 169 0 10 chr9 17133735 17134036 -100728591 + AluJb SINE Alu 1 298 -14 483 286 58 6 chr9 17134287 17134458 -100728169 + MIR SINE MIR 12 191 -71 319 314 29 0 chr9 17134533 17134635 -100727992 + L1MC4 LINE L1 7791 7895 -147 421 329 44 40 chr9 17134723 17135021 -100727606 + L2 LINE L2 2181 2479 -835 4421 225 119 72 chr9 17135021 17136697 -100725930 + MER52A LTR ERV1 1 1755 0 507 306 71 24 chr9 17136701 17137242 -100725385 + L2 LINE L2 2481 3054 -218 385 193 0 68 chr9 17139247 17139335 -100723292 + L1MB4 LINE L1 6065 6146 -34 193 304 11 33 chr9 17139563 17139655 -100722972 + MIR3 SINE MIR 101 190 -18 475 177 50 141 chr9 17139664 17139862 -100722765 + MLT1J LTR MaLR 1 180 -331 2447 115 16 19 chr9 17140511 17140876 -100721751 + THE1B LTR MaLR 1 364 0 548 261 15 36 chr9 17141781 17141976 -100720651 + MIR SINE MIR 17 207 -55 487 263 96 14 chr9 17141978 17142187 -100720440 - LTR33A LTR ERVL -1 522 297 278 49 0 24 chr9 17142357 17142398 -100720229 + (CTG)n Simple_repeat Simple_repeat 3 42 0 190 369 0 0 chr9 17142678 17142743 -100719884 + MIR SINE MIR 68 132 -76 22 0 0 0 chr9 17144627 17144649 -100717978 + AT_rich Low_complexity Low_complexity 1 22 0 378 0 0 0 chr9 17145708 17145750 -100716877 + (CA)n Simple_repeat Simple_repeat 1 42 0 625 308 16 16 chr9 17146177 17146427 -100716200 + MIR SINE MIR 13 262 0 585 88 0 0 chr9 17146432 17146512 -100716115 + MADE1 DNA Mariner 1 80 0 201 339 107 8 chr9 17147293 17147414 -100715213 + MIR SINE MIR 17 149 -113 194 305 114 8 chr9 17148537 17148668 -100713959 + L2 LINE L2 3127 3271 -1 229 175 70 0 chr9 17149521 17149578 -100713049 + MLT1L LTR MaLR 220 280 -335 333 209 121 22 chr9 17149713 17149804 -100712823 + MLT1L LTR MaLR 511 610 -5 2515 174 30 4 chr9 17150335 17150806 -100711821 + L1MB7 LINE L1 5697 6179 -5 853 224 8 42 chr9 17150826 17151063 -100711564 + MIR SINE MIR 34 262 0 312 27 0 0 chr9 17151302 17151339 -100711288 + (CA)n Simple_repeat Simple_repeat 2 38 0 277 244 24 12 chr9 17152024 17152106 -100710521 - L2 LINE L2 -6 3307 3225 324 226 16 0 chr9 17152815 17152877 -100709750 + L1M3 LINE L1 5630 5692 -491 * 4440 146 31 33 chr9 17152875 17153684 -100708943 + L1MB3 LINE L1 5375 6181 -2 589 274 107 5 chr9 17155493 17155690 -100706937 - MIR SINE MIR -20 242 26 215 247 0 106 chr9 17156038 17156123 -100706504 + MIR SINE MIR 105 180 -82 301 289 33 0 chr9 17156554 17156675 -100705952 + LTR16A1 LTR ERVL 322 446 -11 274 269 182 67 chr9 17156705 17157347 -100705280 + L2 LINE L2 2248 2963 -351 499 302 98 10 chr9 17157965 17158170 -100704457 - MIR SINE MIR -20 242 20 199 227 0 0 chr9 17158421 17158465 -100704162 + L2 LINE L2 3265 3308 -5 378 275 79 32 chr9 17159263 17159452 -100703175 + L2 LINE L2 3116 3313 0 279 349 9 0 chr9 17159506 17159615 -100703012 - MIR SINE MIR -61 147 38 1977 174 17 50 chr9 17160644 17161047 -100701580 - MLT1B LTR MaLR 0 390 1 1570 157 102 41 chr9 17161791 17162134 -100700493 + MLT1A1 LTR MaLR 2 365 0 23 33 0 0 chr9 17162477 17162507 -100700120 + AT_rich Low_complexity Low_complexity 1 30 0 2021 151 0 7 chr9 17162685 17162990 -100699637 + AluJb SINE Alu 3 305 -7 192 281 78 0 chr9 17163701 17163765 -100698862 + L2 LINE L2 3196 3264 -8 324 300 60 10 chr9 17165405 17165505 -100697122 + MIR SINE MIR 19 123 -85 464 304 38 59 chr9 17165542 17166019 -100696608 + L2 LINE L2 1901 2367 -947 691 246 35 100 chr9 17166251 17166681 -100695946 - MLT1J LTR MaLR -6 505 104 289 266 0 13 chr9 17166731 17166810 -100695817 - MLT1L LTR MaLR -537 78 1 836 216 5 47 chr9 17167757 17167970 -100694657 + MER63A DNA MER1_type 1 204 -6 181 274 20 0 chr9 17168339 17168390 -100694237 + L2 LINE L2 3261 3312 -1 269 352 11 0 chr9 17168488 17168579 -100694048 + L2 LINE L2 3179 3270 -2 22 0 0 0 chr9 17168759 17168781 -100693846 + AT_rich Low_complexity Low_complexity 1 22 0 325 250 92 25 chr9 17170575 17170695 -100691932 - L1M2 LINE L1 -5924 925 798 195 129 0 0 chr9 17170789 17170820 -100691807 + (GGGA)n Simple_repeat Simple_repeat 4 34 0 367 335 146 14 chr9 17171042 17171498 -100691129 + L2 LINE L2 2546 3072 -241 227 352 94 8 chr9 17171755 17171883 -100690744 - MIR3 SINE MIR -28 180 42 2047 109 0 40 chr9 17171909 17172036 -100690591 + AluSx SINE Alu 8 138 -174 198 0 0 0 chr9 17172036 17172058 -100690569 + (CCA)n Simple_repeat Simple_repeat 1 22 0 2047 109 0 40 chr9 17172058 17172234 -100690393 + AluSx SINE Alu 138 299 -13 1427 191 39 25 chr9 17172321 17172677 -100689950 + MLT1A1 LTR MaLR 5 365 0 432 265 30 15 chr9 17172736 17172936 -100689691 + L1ME3A LINE L1 5749 5951 -219 310 290 59 37 chr9 17173872 17174106 -100688521 + MLT1J1 LTR MaLR 4 278 -168 227 167 30 45 chr9 17174379 17174445 -100688182 + (TATATG)n Simple_repeat Simple_repeat 2 66 0 31 26 0 0 chr9 17175453 17175491 -100687136 + AT_rich Low_complexity Low_complexity 1 38 0 207 209 0 0 chr9 17176176 17176219 -100686408 + T-rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr9 17176727 17176748 -100685879 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 17177017 17177039 -100685588 + AT_rich Low_complexity Low_complexity 1 22 0 767 248 113 48 chr9 17177243 17177553 -100685074 - L2 LINE L2 -575 2739 2410 547 246 77 10 chr9 17177580 17177775 -100684852 - L1ME LINE L1 -302 5819 5612 41385 45 5 1 chr9 17177992 17184118 -100678509 + L1PA4 LINE L1 2 6152 -3 207 287 101 23 chr9 17184250 17184379 -100678248 - MIR SINE MIR 0 262 124 357 232 30 24 chr9 17184991 17185159 -100677468 + (TA)n Simple_repeat Simple_repeat 2 170 0 23 0 0 0 chr9 17186238 17186261 -100676366 + AT_rich Low_complexity Low_complexity 1 23 0 517 272 111 83 chr9 17186733 17187130 -100675497 - HAL1 LINE L1 -1231 1276 869 801 249 180 74 chr9 17187132 17187655 -100674972 + MLT1G1 LTR MaLR 1 524 -6 339 293 50 61 chr9 17187706 17187904 -100674723 - HAL1 LINE L1 -1633 874 679 537 303 53 14 chr9 17189811 17190019 -100672608 - MIR SINE MIR -11 251 36 1916 153 7 3 chr9 17190421 17190709 -100671918 + AluJb SINE Alu 1 289 -23 2395 86 0 10 chr9 17191752 17192055 -100670572 - AluY SINE Alu -11 300 1 2463 143 38 0 chr9 17193112 17193531 -100669096 - Tigger3(Golem) DNA MER2_type -1 3028 2594 946 146 65 0 chr9 17193527 17193726 -100668901 - Tigger3(Golem) DNA MER2_type -536 2493 2282 * 401 198 26 103 chr9 17193723 17193765 -100668862 - Tigger3(Golem) DNA MER2_type -494 108 64 * 2336 97 0 13 chr9 17193765 17194075 -100668552 - AluSx SINE Alu -6 306 1 401 198 26 103 chr9 17194075 17194148 -100668479 - Tigger3(Golem) DNA MER2_type -538 64 2 502 253 68 37 chr9 17194540 17194702 -100667925 - MIR SINE MIR -48 214 48 2228 109 3 0 chr9 17196216 17196510 -100666117 - AluSq SINE Alu -18 295 1 25 0 0 0 chr9 17196733 17196758 -100665869 + AT_rich Low_complexity Low_complexity 1 25 0 522 307 66 53 chr9 17196964 17197137 -100665490 - MLT1I LTR MaLR -24 385 205 2394 47 47 0 chr9 17197137 17197434 -100665193 - AluY SINE Alu 0 311 1 522 307 66 53 chr9 17197434 17197579 -100665048 - MLT1I LTR MaLR -204 205 63 615 160 0 0 chr9 17199415 17199515 -100663112 - AluJ/FLAM SINE Alu -212 100 1 422 332 65 20 chr9 17200182 17200381 -100662246 + MIR SINE MIR 5 212 -50 258 224 0 0 chr9 17200466 17200515 -100662112 - MIR SINE MIR -1 261 213 23 0 0 0 chr9 17202014 17202037 -100660590 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr9 17202542 17202563 -100660064 + AT_rich Low_complexity Low_complexity 1 21 0 612 128 73 0 chr9 17203403 17203512 -100659115 + L1MB7 LINE L1 6068 6184 0 31 0 0 0 chr9 17203560 17203591 -100659036 + AT_rich Low_complexity Low_complexity 1 31 0 241 182 0 26 chr9 17205054 17205131 -100657496 + (TA)n Simple_repeat Simple_repeat 2 76 0 211 303 30 0 chr9 17208797 17208863 -100653764 + MIR3 SINE MIR 120 187 -21 35 41 0 0 chr9 17209512 17209561 -100653066 + AT_rich Low_complexity Low_complexity 1 49 0 205 211 18 0 chr9 17210094 17210151 -100652476 + (TA)n Simple_repeat Simple_repeat 1 58 0 22 0 0 0 chr9 17210215 17210237 -100652390 + AT_rich Low_complexity Low_complexity 1 22 0 29 47 0 0 chr9 17212123 17212166 -100650461 + AT_rich Low_complexity Low_complexity 1 43 0 11322 211 57 21 chr9 17212399 17216934 -100645693 - L1MB5 LINE L1 -36 5962 1237 10601 202 44 68 chr9 17216951 17218210 -100644417 - L1MB1 LINE L1 -1 6403 5115 1931 155 0 3 chr9 17218210 17218506 -100644121 - AluSx SINE Alu -17 295 1 10601 202 44 68 chr9 17218506 17218800 -100643827 - L1MB1 LINE L1 -1289 5115 4815 2017 133 3 7 chr9 17218800 17219101 -100643526 - AluSx SINE Alu -12 300 1 10601 202 44 68 chr9 17219101 17220420 -100642207 - L1MB1 LINE L1 -1589 4815 3466 1588 166 7 41 chr9 17220420 17220749 -100641878 - AluJo SINE Alu 0 319 1 10601 202 44 68 chr9 17220749 17221718 -100640909 - L1MB1 LINE L1 -2938 3466 2475 414 0 0 0 chr9 17221718 17221764 -100640863 + (TG)n Simple_repeat Simple_repeat 1 46 0 10601 202 44 68 chr9 17221764 17222967 -100639660 - L1MB1 LINE L1 -3929 2475 1457 3004 248 69 74 chr9 17223023 17224245 -100638382 - L1MB5 LINE L1 -4675 1216 1 303 200 14 14 chr9 17224242 17224312 -100638315 - L1M4c LINE L1 -4727 1919 1850 * 1645 207 45 61 chr9 17224344 17224852 -100637775 - L1M4c LINE L1 -5213 1329 830 608 278 0 11 chr9 17224849 17225025 -100637602 - L1M4c LINE L1 -6366 176 3 * 2204 43 0 7 chr9 17225105 17225382 -100637245 - L1PA5 LINE L1 -2 6152 5878 369 242 0 11 chr9 17226108 17226203 -100636424 - L1MC4 LINE L1 -1335 6707 6614 2825 100 28 23 chr9 17226211 17226641 -100635986 + Tigger2a DNA MER2_type 2 433 -1 237 65 0 0 chr9 17226642 17226673 -100635954 + (TG)n Simple_repeat Simple_repeat 2 32 0 426 314 33 0 chr9 17227584 17227705 -100634922 + L2 LINE L2 3188 3312 -1 24 0 0 0 chr9 17228039 17228063 -100634564 + AT_rich Low_complexity Low_complexity 1 24 0 1668 163 77 19 chr9 17229641 17229966 -100632661 + MER2 DNA MER2_type 1 344 0 23 0 0 0 chr9 17230201 17230224 -100632403 + AT_rich Low_complexity Low_complexity 1 23 0 180 97 0 0 chr9 17230308 17230339 -100632288 + (T)n Simple_repeat Simple_repeat 1 31 0 1125 196 48 0 chr9 17230755 17230964 -100631663 - MER58A DNA MER1_type 0 224 6 33 56 0 0 chr9 17231714 17231768 -100630859 + AT_rich Low_complexity Low_complexity 1 54 0 24 53 0 0 chr9 17235812 17235850 -100626777 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr9 17236612 17236634 -100625993 + AT_rich Low_complexity Low_complexity 1 22 0 468 307 28 33 chr9 17237113 17237328 -100625299 - MIR SINE MIR 0 262 49 279 0 0 0 chr9 17237976 17238007 -100624620 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 225 339 27 0 chr9 17238008 17238120 -100624507 + MIR SINE MIR 148 262 0 5639 133 25 7 chr9 17238767 17239934 -100622693 + L1PA13 LINE L1 4978 6160 -3 564 289 44 88 chr9 17239914 17240100 -100622527 - L1ME4a LINE L1 -66 6055 5862 * 1527 148 29 0 chr9 17240100 17240378 -100622249 - L1MA4 LINE L1 0 6300 6015 564 289 44 88 chr9 17240378 17240711 -100621916 - L1ME4a LINE L1 -259 5862 5559 458 244 0 8 chr9 17241127 17241246 -100621381 - L1MA7 LINE L1 0 6291 6174 2057 97 7 45 chr9 17241264 17241572 -100621055 - AluSx SINE Alu -16 296 1 28 61 0 0 chr9 17241573 17241622 -100621005 + AT_rich Low_complexity Low_complexity 1 49 0 5308 159 42 8 chr9 17242143 17243345 -100619282 - L1MA4 LINE L1 -12 6288 5046 861 110 0 0 chr9 17243777 17243931 -100618696 + (TTCC)n Simple_repeat Simple_repeat 1 154 0 224 57 0 29 chr9 17243933 17243968 -100618659 + (TCCCC)n Simple_repeat Simple_repeat 2 35 0 1543 162 0 97 chr9 17243968 17244289 -100618338 - AluJo SINE Alu -11 291 2 297 216 120 56 chr9 17245135 17245260 -100617367 + MIR SINE MIR 120 252 -10 368 259 74 51 chr9 17245525 17245726 -100616901 + MIR SINE MIR 4 207 -55 5582 145 59 4 chr9 17246996 17247689 -100614938 + L1MA9 LINE L1 4928 5581 -731 306 0 0 0 chr9 17247689 17247723 -100614904 + (CA)n Simple_repeat Simple_repeat 2 35 0 5582 145 59 4 chr9 17247723 17248192 -100614435 + L1MA9 LINE L1 5581 6287 -25 487 238 10 0 chr9 17248419 17248520 -100614107 - MER93a LTR ERV1 -2 400 299 26 88 0 0 chr9 17248632 17248700 -100613927 + AT_rich Low_complexity Low_complexity 1 68 0 608 173 30 95 chr9 17249791 17249883 -100612744 + MER46C DNA MER2_type 176 254 -84 1904 147 0 10 chr9 17249883 17250176 -100612451 - AluSx SINE Alu 0 312 23 608 173 30 95 chr9 17250176 17250251 -100612376 + MER46C DNA MER2_type 254 332 -6 217 254 18 0 chr9 17251248 17251303 -100611324 - L2 LINE L2 -211 3061 3006 199 227 27 93 chr9 17251431 17251506 -100611121 + MIR3 SINE MIR 132 201 -7 333 127 0 0 chr9 17251643 17251706 -100610921 + L1MA10 LINE L1 6271 6333 -1 2722 143 0 7 chr9 17253059 17253500 -100609127 - L1PA11 LINE L1 -1914 4232 3795 6352 146 19 2 chr9 17253500 17255386 -100607241 + L1PA11 LINE L1 4247 6174 0 1105 285 152 11 chr9 17255387 17255919 -100606708 + L2 LINE L2 2707 3313 0 530 291 73 7 chr9 17258813 17258964 -100603663 + MIR SINE MIR 22 182 -80 196 247 118 24 chr9 17258977 17259062 -100603565 + MIR SINE MIR 143 235 -27 3747 205 75 51 chr9 17259634 17260978 -100601649 - L1MD2 LINE L1 -15 6344 4968 1522 244 66 17 chr9 17260986 17261562 -100601065 + MLT1E3 LTR MaLR 1 608 -16 188 247 13 65 chr9 17261627 17261704 -100600923 - L2 LINE L2 -2278 1036 964 266 236 181 28 chr9 17261896 17262040 -100600587 - Charlie7 DNA MER1_type -1 2611 2446 1951 170 29 10 chr9 17262080 17262463 -100600164 + L1MC1 LINE L1 5944 6333 0 535 300 96 8 chr9 17262570 17262810 -100599817 + Charlie7 DNA MER1_type 96 356 -2256 1286 234 157 23 chr9 17262810 17263182 -100599445 + Charlie7 DNA MER1_type 1479 1800 -812 312 27 0 0 chr9 17263182 17263219 -100599408 + (TA)n Simple_repeat Simple_repeat 2 38 0 1286 234 157 23 chr9 17263219 17263445 -100599182 + Charlie7 DNA MER1_type 1800 2157 -455 276 119 0 0 chr9 17263445 17263487 -100599140 - MSTA LTR MaLR 0 428 387 42720 48 7 0 chr9 17263489 17269595 -100593032 + L1PA4 LINE L1 7 6151 -4 789 201 165 27 chr9 17269595 17269907 -100592720 - MSTA LTR MaLR -27 401 1 261 169 62 0 chr9 17270002 17270067 -100592560 + Charlie7 DNA MER1_type 2278 2346 -266 23 33 0 0 chr9 17270603 17270633 -100591994 + AT_rich Low_complexity Low_complexity 1 30 0 2324 174 70 0 chr9 17270763 17271104 -100591523 - L1PB4 LINE L1 -2 6154 5771 207 0 0 0 chr9 17271104 17271127 -100591500 + (CA)n Simple_repeat Simple_repeat 1 23 0 2324 174 70 0 chr9 17271127 17271244 -100591383 - L1PB4 LINE L1 -385 5771 5664 1215 173 4 0 chr9 17271253 17271478 -100591149 - L1PB4 LINE L1 -1254 4892 4667 15222 100 10 1 chr9 17271478 17274489 -100588138 - L1PA7 LINE L1 -6 6463 3432 10959 109 5 1 chr9 17274489 17276027 -100586600 - L1PA7 LINE L1 -4910 1551 8 4533 184 17 2 chr9 17276036 17276958 -100585669 - L1PB4 LINE L1 -1478 4668 3733 35 0 0 0 chr9 17277030 17277065 -100585562 + AT_rich Low_complexity Low_complexity 1 35 0 351 196 62 27 chr9 17277162 17277274 -100585353 - MIR SINE MIR -10 252 137 529 333 46 17 chr9 17278980 17279217 -100583410 + MIR SINE MIR 16 259 -3 268 298 16 65 chr9 17279217 17279341 -100583286 - MIR SINE MIR -66 196 79 216 333 30 117 chr9 17279920 17280151 -100582476 - L2 LINE L2 -84 3188 2978 673 221 22 144 chr9 17282186 17282553 -100580074 + L2 LINE L2 2987 3308 -5 2722 112 35 7 chr9 17283459 17284119 -100578508 - L1MA8 LINE L1 -592 5699 5025 3034 153 40 17 chr9 17284121 17284715 -100577912 + L1MA8 LINE L1 5680 6287 -4 240 239 56 0 chr9 17284717 17284788 -100577839 - MLT1L LTR MaLR -68 547 473 211 286 0 0 chr9 17284917 17284987 -100577640 + (TA)n Simple_repeat Simple_repeat 1 70 0 26 30 0 0 chr9 17285004 17285037 -100577590 + AT_rich Low_complexity Low_complexity 1 33 0 285 268 14 0 chr9 17285060 17285131 -100577496 - MLT1J LTR MaLR -316 195 124 410 303 136 23 chr9 17285180 17285401 -100577226 + MIR SINE MIR 17 262 0 287 354 84 17 chr9 17285568 17285913 -100576714 + L2 LINE L2 1718 2085 -1229 346 330 118 44 chr9 17285933 17286545 -100576082 - L2 LINE L2 0 3313 2650 248 298 141 0 chr9 17286560 17286681 -100575946 - L2 LINE L2 -851 2463 2326 184 298 96 58 chr9 17286889 17286993 -100575634 - L2 LINE L2 -45 3268 3161 329 278 225 31 chr9 17287505 17287696 -100574931 + MIR SINE MIR 25 252 -10 191 356 0 0 chr9 17288942 17289001 -100573626 + MIR SINE MIR 1 59 -203 219 299 183 52 chr9 17289047 17289392 -100573235 - L2 LINE L2 -51 3221 2832 236 229 55 0 chr9 17289944 17290053 -100572574 + (TA)n Simple_repeat Simple_repeat 1 115 0 262 358 89 46 chr9 17290291 17290727 -100571900 + L2 LINE L2 2286 2740 -574 386 161 0 0 chr9 17291658 17291744 -100570883 + L1M4 LINE L1 4954 5039 -1107 1110 181 18 0 chr9 17291758 17291984 -100570643 - L1MA6 LINE L1 -5 6295 6066 11086 162 56 18 chr9 17291984 17294676 -100567951 - L1MA6 LINE L1 -610 5690 2892 4263 169 54 22 chr9 17294669 17295083 -100567544 + L1MB5 LINE L1 4954 5354 -820 * 1646 165 18 4 chr9 17295083 17295355 -100567272 + AluJo SINE Alu 37 312 0 4263 169 54 22 chr9 17295355 17296124 -100566503 + L1MB5 LINE L1 5354 6173 -1 524 337 15 35 chr9 17296183 17296385 -100566242 + MIR3 SINE MIR 2 199 -9 22 0 0 0 chr9 17296476 17296498 -100566129 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr9 17298274 17298305 -100564322 + AT_rich Low_complexity Low_complexity 1 31 0 494 295 98 12 chr9 17299029 17299202 -100563425 - MIR SINE MIR -60 202 15 443 215 43 11 chr9 17301700 17301793 -100560834 + FLAM_A SINE Alu 20 115 -27 489 256 83 0 chr9 17301829 17301950 -100560677 + MIR3 SINE MIR 57 187 -21 238 321 64 18 chr9 17302874 17302983 -100559644 + L2 LINE L2 2872 2985 -287 267 295 48 38 chr9 17304487 17304592 -100558035 + L2 LINE L2 3167 3272 0 352 321 25 3 chr9 17305375 17305561 -100557066 - MIR SINE MIR -5 257 26 609 14 0 0 chr9 17305762 17305832 -100556795 + (TTTC)n Simple_repeat Simple_repeat 3 72 0 7708 18 2 0 chr9 17305832 17306994 -100555633 - L1PA3 LINE L1 -10 6145 4981 1238 126 0 0 chr9 17307105 17307280 -100555347 + AluSg/x SINE Alu 137 311 -1 198 268 99 0 chr9 17307280 17307351 -100555276 + MIR SINE MIR 150 227 -35 192 77 0 0 chr9 17309258 17309284 -100553343 + (A)n Simple_repeat Simple_repeat 1 26 0 212 317 99 19 chr9 17309675 17309836 -100552791 + L2 LINE L2 2623 2796 -518 272 216 0 0 chr9 17309853 17309904 -100552723 + MLT1F1 LTR MaLR 17 67 -500 263 322 176 5 chr9 17309970 17310169 -100552458 + L2 LINE L2 92 324 -2990 312 253 20 20 chr9 17310175 17310274 -100552353 + MER112 DNA MER1_type 153 251 -9 234 171 0 0 chr9 17310437 17310478 -100552149 - Charlie8 DNA MER1_type -2 2415 2375 426 263 63 63 chr9 17310643 17310818 -100551809 + MIR SINE MIR 60 234 -28 477 257 99 13 chr9 17310842 17310994 -100551633 - Charlie8 DNA MER1_type -2234 183 19 486 283 75 19 chr9 17312471 17312683 -100549944 - MIR SINE MIR -33 229 6 239 280 167 24 chr9 17312737 17312905 -100549722 - L2 LINE L2 -87 3185 2994 213 304 215 7 chr9 17313878 17314013 -100548614 - MIR SINE MIR -14 248 86 586 281 209 0 chr9 17314860 17315109 -100547518 + Charlie2 DNA MER1_type 1 301 -2481 462 240 156 28 chr9 17315234 17315413 -100547214 + Charlie2a DNA MER1_type 1462 1663 -1199 435 236 81 20 chr9 17315422 17315570 -100547057 + Charlie2a DNA MER1_type 2705 2861 -1 931 198 36 1 chr9 17316576 17316888 -100545739 + MLT1A1 LTR MaLR 1 365 0 1836 147 0 45 chr9 17317379 17317693 -100544934 + AluJb SINE Alu 1 300 -12 192 238 0 79 chr9 17319541 17319604 -100543023 - L2 LINE L2 -94 3219 3162 200 42 0 0 chr9 17319705 17319729 -100542898 - MIR SINE MIR -63 145 122 1483 109 17 30 chr9 17319736 17319966 -100542661 - THE1C LTR MaLR 0 375 149 21 0 0 0 chr9 17320656 17320677 -100541950 + AT_rich Low_complexity Low_complexity 1 21 0 213 94 0 0 chr9 17321477 17321509 -100541118 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 389 242 61 8 chr9 17321618 17321750 -100540877 - L1ME4a LINE L1 -2 6119 5981 2329 226 43 17 chr9 17321817 17322428 -100540199 + MLT1E3 LTR MaLR 1 624 0 301 298 121 8 chr9 17323193 17323317 -100539310 - L1ME4a LINE L1 -410 5711 5574 1649 199 119 26 chr9 17323575 17324002 -100538625 - MLT1C LTR MaLR 0 467 1 226 295 13 39 chr9 17324108 17324186 -100538441 + MIR SINE MIR 186 261 -1 306 73 0 0 chr9 17325445 17325486 -100537141 + (CA)n Simple_repeat Simple_repeat 2 42 0 219 114 0 0 chr9 17325733 17325768 -100536859 + (CAG)n Simple_repeat Simple_repeat 1 35 0 325 271 0 0 chr9 17327081 17327151 -100535476 + MIR SINE MIR 79 148 -114 264 245 179 32 chr9 17327176 17327320 -100535307 + MIR SINE MIR 5 163 -77 2517 160 38 2 chr9 17327595 17327916 -100534711 - Tigger2a DNA MER2_type -2274 434 93 429 20 0 0 chr9 17327916 17327966 -100534661 + (GGA)n Simple_repeat Simple_repeat 2 51 0 2517 160 38 2 chr9 17327966 17328063 -100534564 - Tigger2a DNA MER2_type -2615 93 1 637 353 37 12 chr9 17328149 17328393 -100534234 - MIR SINE MIR -9 253 4 338 324 75 29 chr9 17328502 17328675 -100533952 - MIR SINE MIR -74 188 8 282 258 32 21 chr9 17329519 17329612 -100533015 + MIR SINE MIR 12 105 -157 455 249 29 35 chr9 17329996 17330169 -100532458 + Charlie8 DNA MER1_type 106 277 -2140 322 205 133 12 chr9 17330258 17330341 -100532286 + MER5A DNA MER1_type 4 96 -93 1134 145 65 0 chr9 17330421 17330607 -100532020 + MER58A DNA MER1_type 27 224 0 427 336 103 11 chr9 17331717 17331979 -100530648 - L3b LINE CR1 -194 1389 1104 356 304 114 6 chr9 17332225 17332383 -100530244 - MIR SINE MIR 0 262 88 413 200 38 0 chr9 17332495 17332575 -100530052 + L2 LINE L2 3190 3272 0 2662 102 3 3 chr9 17332674 17333035 -100529592 + THE1B LTR MaLR 1 361 -3 385 266 22 44 chr9 17333055 17333212 -100529415 + MER5A DNA MER1_type 7 168 -18 1046 233 67 75 chr9 17333215 17333705 -100528922 + LTR33 LTR ERVL 32 517 -4 236 296 217 0 chr9 17335057 17335209 -100527418 - MIR SINE MIR -69 193 9 1463 294 94 6 chr9 17335466 17335977 -100526650 - MLT1L LTR MaLR -57 558 3 322 282 23 30 chr9 17336201 17336332 -100526295 - L1ME LINE L1 -352 5769 5640 303 279 197 33 chr9 17336344 17336588 -100526039 - L1ME LINE L1 -588 5582 5299 676 207 132 24 chr9 17337228 17337437 -100525190 + MIR SINE MIR 33 261 -1 210 354 186 0 chr9 17337446 17337559 -100525068 - L2 LINE L2 -2 3270 3137 193 389 21 7 chr9 17337924 17338068 -100524559 - L2 LINE L2 -659 2655 2510 664 251 78 33 chr9 17339353 17339596 -100523031 - L2 LINE L2 0 3313 3060 1081 234 28 16 chr9 17339596 17339848 -100522779 - MLT1E1 LTR MaLR 0 654 400 439 245 69 24 chr9 17339891 17340083 -100522544 - MLT1E1 LTR MaLR -402 252 1 593 314 136 9 chr9 17340086 17340565 -100522062 - L2 LINE L2 -252 3061 2516 940 263 24 24 chr9 17340583 17340830 -100521797 + MIR SINE MIR 12 258 -4 208 302 160 47 chr9 17340862 17340968 -100521659 - L2 LINE L2 -805 2509 2392 1815 169 25 19 chr9 17341200 17341562 -100521065 + MLT1A1 LTR MaLR 2 365 0 14559 200 40 9 chr9 17342170 17348500 -100514127 + L1PB1 LINE L1 6 6864 -3 26 0 0 0 chr9 17348500 17348526 -100514101 + AT_rich Low_complexity Low_complexity 1 26 0 352 337 20 65 chr9 17348543 17348742 -100513885 + L2 LINE L2 3027 3216 -56 1055 194 38 0 chr9 17348745 17348931 -100513696 - MLT1A1 LTR MaLR 0 365 173 340 286 99 31 chr9 17349022 17349183 -100513444 + HERV16 LTR ERVL 137 308 -4688 4068 177 91 29 chr9 17349345 17350216 -100512411 + MER45B DNA AcHobo 116 1040 0 221 296 179 34 chr9 17350341 17350520 -100512107 + MIR SINE MIR 58 262 0 4595 113 2 2 chr9 17350778 17351413 -100511214 + MER41B LTR ERV1 1 635 0 343 61 0 0 chr9 17354139 17354188 -100508439 + Alu SINE Alu 252 300 -1 2225 96 3 0 chr9 17354336 17354639 -100507988 - AluSx SINE Alu -8 304 1 490 282 77 28 chr9 17357125 17357306 -100505321 + MIR SINE MIR 73 262 0 2264 219 98 25 chr9 17357646 17358222 -100504405 - L1ME2 LINE L1 -9 6155 5530 216 0 0 0 chr9 17358222 17358246 -100504381 + (CA)n Simple_repeat Simple_repeat 1 24 0 2264 219 98 25 chr9 17358246 17358281 -100504346 - L1ME2 LINE L1 -634 5530 5499 862 129 18 61 chr9 17358332 17358495 -100504132 - MER97b DNA MER1_type? -874 179 24 714 258 63 0 chr9 17358521 17358761 -100503866 - L1ME2 LINE L1 -704 5470 5216 398 254 9 18 chr9 17359524 17359638 -100502989 + MIR SINE MIR 148 260 -2 364 49 16 0 chr9 17359979 17360040 -100502587 - L1MA7 LINE L1 -1 6290 6229 317 177 16 16 chr9 17360380 17360442 -100502185 + MIR SINE MIR 34 95 -113 996 113 28 0 chr9 17360971 17361113 -100501514 + AluSg/x SINE Alu 160 305 -7 228 67 0 0 chr9 17361644 17361674 -100500953 + (TG)n Simple_repeat Simple_repeat 2 31 0 262 348 29 22 chr9 17364011 17364149 -100498478 - MIR3 SINE MIR -66 142 4 489 276 33 20 chr9 17364315 17364467 -100498160 + MIR SINE MIR 95 248 -14 358 282 0 9 chr9 17364796 17364906 -100497721 - MIR SINE MIR -61 147 74 1875 178 27 0 chr9 17365255 17365593 -100497034 + MLT1A1 LTR MaLR 7 353 -12 280 273 0 0 chr9 17367019 17367085 -100495542 + MIR3 SINE MIR 95 160 -48 244 308 0 110 chr9 17367991 17368025 -100494602 + MIR SINE MIR 20 56 -206 2290 96 0 3 chr9 17368025 17368318 -100494309 - AluSc SINE Alu -17 292 1 244 308 0 110 chr9 17368318 17368429 -100494198 + MIR SINE MIR 56 149 -113 320 267 56 0 chr9 17470393 17470483 -100392144 - MIR SINE MIR -81 181 87 1299 127 75 0 chr9 17470973 17471186 -100391441 + MER30 DNA MER1_type 2 230 0 562 208 8 0 chr9 17471880 17472005 -100390622 - L1M4 LINE L1 -883 5263 5138 2262 130 8 24 chr9 17472467 17472837 -100389790 - THE1B LTR MaLR 0 364 1 1463 187 16 13 chr9 17472837 17473147 -100389480 - L1M4 LINE L1 -998 5148 4838 205 230 40 0 chr9 17473299 17473373 -100389254 + (CCCCG)n Simple_repeat Simple_repeat 2 78 0 615 232 53 32 chr9 17473540 17473730 -100388897 - MLT1A1 LTR MaLR -171 194 1 695 200 7 0 chr9 17473730 17473865 -100388762 - MLT1A1-int LTR MaLR 0 1735 1600 185 233 0 0 chr9 17475140 17475200 -100387427 + C-rich Low_complexity Low_complexity 1 60 0 26 0 0 0 chr9 17475200 17475226 -100387401 + GC_rich Low_complexity Low_complexity 1 26 0 403 18 36 0 chr9 17476110 17476166 -100386461 + (TG)n Simple_repeat Simple_repeat 1 58 0 1399 211 80 19 chr9 17477279 17477781 -100384846 - L1MC/D LINE L1 -745 5401 4911 1956 118 14 0 chr9 17478798 17479112 -100383515 + AluSq SINE Alu 1 318 0 282 298 76 57 chr9 17479715 17479793 -100382834 - L1MC/D LINE L1 -2287 5521 5446 2009 135 39 9 chr9 17479793 17480127 -100382500 - MER2 DNA MER2_type 0 344 1 282 298 76 57 chr9 17480127 17480310 -100382317 - L1MC/D LINE L1 -2362 5446 5255 538 327 41 61 chr9 17480467 17480998 -100381629 - L1MC/D LINE L1 -1103 5043 4532 400 353 91 29 chr9 17480998 17481483 -100381144 - HAL1 LINE L1 -1009 1498 984 1839 102 15 19 chr9 17483613 17483879 -100378748 + AluSg SINE Alu 1 265 -45 2564 222 14 0 chr9 17484535 17485106 -100377521 + L1MC3 LINE L1 7205 7783 -2 195 341 146 39 chr9 17485381 17485586 -100377041 + MIR SINE MIR 30 256 -6 243 146 18 18 chr9 17485714 17485769 -100376858 + L1MB7 LINE L1 6130 6184 0 1427 180 0 4 chr9 17486318 17486546 -100376081 + AluJb SINE Alu 3 229 -83 693 203 73 0 chr9 17487046 17487223 -100375404 - L1M4 LINE L1 -396 5788 5599 405 138 0 0 chr9 17487319 17487384 -100375243 - L1MB7 LINE L1 -226 5948 5884 345 222 79 32 chr9 17487385 17487511 -100375116 + L1MB7 LINE L1 5953 6084 -100 288 262 48 48 chr9 17487667 17487854 -100374773 + L1ME4a LINE L1 5934 6120 -1 1351 154 43 1 chr9 17488260 17488582 -100374045 + L1MC/D LINE L1 5158 5491 -744 317 221 0 0 chr9 17489841 17489909 -100372718 - Tigger4(Zombi) DNA MER2_type 0 2731 2664 239 250 0 0 chr9 17489884 17489940 -100372687 - Tigger4(Zombi) DNA MER2_type -2674 57 2 * 1075 224 56 32 chr9 17489941 17490427 -100372200 + MLT1E LTR MaLR 1 593 0 180 245 20 0 chr9 17492694 17492743 -100369884 + L2 LINE L2 2713 2762 -552 213 313 45 89 chr9 17492838 17493196 -100369431 + L2 LINE L2 2882 3223 -90 225 244 0 0 chr9 17493858 17493899 -100368728 + (TG)n Simple_repeat Simple_repeat 2 42 0 446 340 25 15 chr9 17493940 17494143 -100368484 + MIR SINE MIR 58 262 0 281 302 0 0 chr9 17495160 17495246 -100367381 + MER3 DNA MER1_type 37 122 -87 1684 231 62 38 chr9 17495528 17496394 -100366233 - L1ME1 LINE L1 -289 5877 4985 2359 164 19 19 chr9 17496398 17496824 -100365803 - MSTB LTR MaLR 0 426 1 2975 249 42 50 chr9 17496843 17499019 -100363608 - L1 LINE L1 -3202 4363 2203 395 206 0 15 chr9 17499028 17499096 -100363531 + MER8 DNA MER2_type 1 67 -172 270 95 0 0 chr9 17499487 17499529 -100363098 + (CA)n Simple_repeat Simple_repeat 1 42 0 1484 201 6 29 chr9 17503515 17503533 -100359094 - AluJo SINE Alu -6 306 289 234 0 0 0 chr9 17503533 17503559 -100359068 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 1484 201 6 29 chr9 17503559 17503853 -100358774 - AluJo SINE Alu -23 289 1 2228 102 0 3 chr9 17504554 17504847 -100357780 - AluSc SINE Alu -17 292 1 254 263 82 67 chr9 17505079 17505273 -100357354 + L1MC4a LINE L1 7219 7415 -393 * 267 268 92 49 chr9 17505259 17505833 -100356794 + L1MC4 LINE L1 7313 8042 0 234 91 0 0 chr9 17506557 17506590 -100356037 + (T)n Simple_repeat Simple_repeat 1 33 0 286 300 42 8 chr9 17507768 17507888 -100354739 - MIR SINE MIR -15 247 124 2270 36 43 4 chr9 17507951 17508253 -100354374 + AluY SINE Alu 1 313 0 618 296 64 15 chr9 17508266 17508469 -100354158 - MIR SINE MIR -48 214 2 564 330 28 14 chr9 17509128 17509346 -100353281 + MIR SINE MIR 5 225 -37 2167 124 38 27 chr9 17511583 17511954 -100350673 + THE1C LTR MaLR 1 375 0 205 274 189 11 chr9 17512972 17513067 -100349560 - MIR SINE MIR -131 131 20 2239 128 0 0 chr9 17513199 17513511 -100349116 + AluSx SINE Alu 1 312 0 384 118 0 44 chr9 17514309 17514377 -100348250 + AluS SINE Alu 1 65 -238 248 202 169 34 chr9 17515098 17515187 -100347440 + MIR SINE MIR 99 199 -63 833 190 11 0 chr9 17515306 17515485 -100347142 - L1MA7 LINE L1 -10 6281 6101 11521 117 31 68 chr9 17515486 17516060 -100346567 - Tigger1 DNA MER2_type -3 2415 1821 1972 159 0 28 chr9 17516060 17516381 -100346246 + AluSx SINE Alu 1 312 0 11521 117 31 68 chr9 17516381 17517908 -100344719 - Tigger1 DNA MER2_type -597 1821 392 7287 201 38 4 chr9 17518213 17519880 -100342747 + L1 LINE L1 3217 4939 -1207 336 48 0 0 chr9 17520691 17520733 -100341894 + (TG)n Simple_repeat Simple_repeat 1 42 0 288 308 103 0 chr9 17520742 17520849 -100341778 + MER117 DNA MER1_type 53 170 -27 538 259 58 58 chr9 17521668 17521977 -100340650 - L1M4 LINE L1 -1605 4541 4233 280 261 0 0 chr9 17521970 17522035 -100340592 - L1M4 LINE L1 -3112 3034 2970 * 1893 164 0 26 chr9 17522035 17522231 -100340396 - AluJo SINE Alu -10 302 115 3934 68 12 124 chr9 17522231 17522918 -100339709 - LTR66 LTR ERVL 0 610 1 1893 164 0 26 chr9 17522918 17523031 -100339596 - AluJo SINE Alu -197 115 1 295 155 179 0 chr9 17523032 17523116 -100339511 - L1M4 LINE L1 -3169 2977 2879 1960 195 112 6 chr9 17523116 17523582 -100339045 - L1PA16 LINE L1 -1 6165 5651 1725 222 76 28 chr9 17523565 17523777 -100338850 - L1M4 LINE L1 -3238 2908 2708 * 2250 103 3 0 chr9 17523777 17524078 -100338549 + AluSp SINE Alu 1 302 -11 1725 222 76 28 chr9 17524078 17524482 -100338145 - L1M4 LINE L1 -3438 2708 2262 1663 199 0 10 chr9 17524486 17524793 -100337834 + AluJb SINE Alu 3 306 -6 2472 73 0 19 chr9 17524793 17525109 -100337518 + AluY SINE Alu 1 310 -1 2213 109 6 6 chr9 17525124 17525437 -100337190 + AluSp SINE Alu 1 313 0 296 318 12 0 chr9 17525728 17525813 -100336814 - MIR SINE MIR -176 86 1 905 267 81 40 chr9 17525848 17526369 -100336258 - L1ME4a LINE L1 -69 6121 5580 403 262 93 52 chr9 17526422 17526594 -100336033 - MIR SINE MIR 0 262 84 23 54 0 0 chr9 17526756 17526793 -100335834 + AT_rich Low_complexity Low_complexity 1 37 0 816 216 50 37 chr9 17527000 17527218 -100335409 - L1MB8 LINE L1 -5 6173 5953 318 259 80 45 chr9 17528156 17528268 -100334359 - MLT1I LTR MaLR -2 407 292 189 107 0 0 chr9 17529286 17529314 -100333313 + (T)n Simple_repeat Simple_repeat 1 28 0 569 256 95 18 chr9 17529461 17529629 -100332998 + MIR SINE MIR 1 181 -81 223 280 147 21 chr9 17529633 17529776 -100332851 - L2 LINE L2 -176 3137 2977 264 184 233 68 chr9 17529859 17529962 -100332665 - MIR SINE MIR -50 212 93 449 282 60 6 chr9 17531150 17531624 -100331003 - L1ME4a LINE L1 -743 5488 4987 350 281 81 68 chr9 17531838 17531981 -100330646 - L1ME4a LINE L1 -1501 4714 4574 1862 140 41 0 chr9 17531981 17532295 -100330332 - AluSx SINE Alu 0 325 1 350 281 81 68 chr9 17532295 17532666 -100329961 - L1ME4a LINE L1 -1641 4574 4192 562 285 79 70 chr9 17532793 17533300 -100329327 - L1MEc LINE L1 -3546 2669 2198 1792 180 0 0 chr9 17533418 17533712 -100328915 - AluJb SINE Alu -18 294 1 427 302 54 15 chr9 17533928 17534133 -100328494 - L1MEc LINE L1 -4865 1340 1128 378 226 163 0 chr9 17534175 17534365 -100328262 - L1MDa LINE L1 -3106 3023 2803 328 287 56 46 chr9 17534385 17534883 -100327744 - L1MDa LINE L1 -3461 2668 2166 21 0 0 0 chr9 17534994 17535015 -100327612 + AT_rich Low_complexity Low_complexity 1 21 0 205 205 0 0 chr9 17535280 17535319 -100327308 + T-rich Low_complexity Low_complexity 1 39 0 305 328 75 11 chr9 17535419 17535687 -100326940 - L1MDa LINE L1 -4602 1527 1243 608 277 107 64 chr9 17535711 17535791 -100326836 - L1MDa LINE L1 -4886 1233 1158 1118 211 0 4 chr9 17535791 17536028 -100326599 + MER46A DNA MER2_type 1 236 0 608 277 107 64 chr9 17536028 17536603 -100326024 - L1MDa LINE L1 -4961 1158 550 1482 236 16 0 chr9 17536779 17537148 -100325479 - L1M4 LINE L1 -923 5223 4849 252 297 58 58 chr9 17537215 17537353 -100325274 + MIR SINE MIR 29 166 -96 462 344 8 0 chr9 17537370 17537501 -100325126 + MIR SINE MIR 1 132 -130 339 158 118 13 chr9 17537858 17537934 -100324693 - L1MB7 LINE L1 -40 6144 6061 8087 34 0 0 chr9 17537938 17539682 -100322945 - L1PA3 LINE L1 -2 6153 4411 2757 20 0 0 chr9 17539682 17539986 -100322641 - AluYa5 SINE Alu -7 304 1 17469 45 58 3 chr9 17539986 17542225 -100320402 - L1PA3 LINE L1 -3783 2363 1 808 264 146 65 chr9 17542355 17542828 -100319799 + MLT1J LTR MaLR 1 511 0 454 302 98 51 chr9 17543533 17543768 -100318859 + MIR SINE MIR 17 262 0 603 268 55 11 chr9 17544137 17544320 -100318307 - MIR SINE MIR -36 226 36 231 284 68 14 chr9 17544507 17544581 -100318046 + MIR SINE MIR 107 184 -78 23 33 0 0 chr9 17545810 17545840 -100316787 + AT_rich Low_complexity Low_complexity 1 30 0 203 115 131 0 chr9 17545853 17545914 -100316713 + (TTAA)n Simple_repeat Simple_repeat 4 72 0 294 119 37 30 chr9 17545985 17546119 -100316508 + (TA)n Simple_repeat Simple_repeat 2 136 0 511 236 57 0 chr9 17546210 17546333 -100316294 - LTR37A LTR ERV1 -251 175 46 360 286 127 24 chr9 17546407 17546620 -100316007 - L2 LINE L2 -15 3298 3064 197 347 14 0 chr9 17547812 17547884 -100314743 - L2 LINE L2 -344 2969 2897 1916 108 20 14 chr9 17549331 17549626 -100313001 - AluSx SINE Alu -15 297 1 21 36 0 0 chr9 17549811 17549839 -100312788 + AT_rich Low_complexity Low_complexity 1 28 0 4155 241 75 17 chr9 17549926 17551334 -100311293 + Zaphod DNA AcHobo 2532 4021 -10 773 245 130 12 chr9 17551721 17551974 -100310653 + MLT1H1 LTR MaLR 273 555 0 320 298 40 32 chr9 17552636 17552760 -100309867 + L2 LINE L2 3147 3271 -1 394 321 164 13 chr9 17552787 17552946 -100309681 - MIR3 SINE MIR -11 197 15 531 327 98 31 chr9 17553021 17553348 -100309279 + L3 LINE CR1 913 1261 -316 210 304 194 36 chr9 17553375 17553767 -100308860 + L2 LINE L2 1790 2243 -1071 468 314 46 31 chr9 17553977 17554171 -100308456 + MIR SINE MIR 32 228 -34 228 293 50 20 chr9 17554664 17554763 -100307864 + L3 LINE CR1 1370 1471 -106 199 248 19 0 chr9 17554760 17554814 -100307813 + L3 LINE CR1 1519 1570 -7 * 927 347 111 34 chr9 17555222 17556496 -100306131 + L2 LINE L2 1356 2727 -587 383 216 23 0 chr9 17556589 17556677 -100305950 - MER5A DNA MER1_type -83 106 17 265 347 21 26 chr9 17556741 17556931 -100305696 + L2 LINE L2 2782 2970 -344 26 30 0 0 chr9 17557576 17557609 -100305018 + AT_rich Low_complexity Low_complexity 1 33 0 401 281 44 37 chr9 17558100 17558235 -100304392 - L2 LINE L2 0 3313 3178 236 354 157 11 chr9 17558901 17559079 -100303548 - MIR SINE MIR -12 250 47 812 182 77 6 chr9 17559535 17559705 -100302922 - L1MC3 LINE L1 -1699 6086 5905 774 220 83 49 chr9 17560551 17560815 -100301812 - ORSL DNA AcHobo -2 273 1 1695 179 4 0 chr9 17562269 17562537 -100300090 - AluJo SINE Alu -32 280 12 714 346 88 26 chr9 17562992 17563492 -100299135 + L3 LINE CR1 1046 1576 -1 2179 118 0 3 chr9 17563528 17563825 -100298802 - AluSq SINE Alu -17 296 1 212 367 75 37 chr9 17563825 17564013 -100298614 - L2 LINE L2 -8 3264 3070 280 336 77 34 chr9 17564150 17564358 -100298269 - L2 LINE L2 -222 3050 2834 25 0 0 0 chr9 17564562 17564587 -100298040 + AT_rich Low_complexity Low_complexity 1 25 0 3280 255 139 23 chr9 17564994 17566419 -100296208 + L2 LINE L2 1723 3311 -2 22 0 0 0 chr9 17566701 17566723 -100295904 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 17567059 17567080 -100295547 + AT_rich Low_complexity Low_complexity 1 21 0 356 345 28 14 chr9 17567311 17567453 -100295174 - L2 LINE L2 -4 3268 3125 484 289 147 45 chr9 17567738 17568091 -100294536 - L2 LINE L2 -561 2753 2365 180 200 0 0 chr9 17568272 17568322 -100294305 + (CAGG)n Simple_repeat Simple_repeat 1 50 0 210 191 0 0 chr9 17568327 17568374 -100294253 + A-rich Low_complexity Low_complexity 1 47 0 241 386 53 0 chr9 17568600 17568714 -100293913 + MIR3 SINE MIR 83 202 -6 628 190 9 134 chr9 17568734 17568803 -100293824 - MLT2B1 LTR ERVL 0 520 444 489 84 0 0 chr9 17568803 17568874 -100293753 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 628 190 9 134 chr9 17568874 17569020 -100293607 - MLT2B1 LTR ERVL -76 444 332 483 144 33 0 chr9 17569017 17569107 -100293520 - MLT2B1 LTR ERVL -424 96 4 * 2409 81 0 0 chr9 17570451 17570760 -100291867 - AluY SINE Alu 0 311 3 336 267 67 0 chr9 17571073 17571148 -100291479 - L2 LINE L2 0 3313 3234 456 19 0 0 chr9 17571379 17571432 -100291195 + (TC)n Simple_repeat Simple_repeat 1 53 0 288 0 0 0 chr9 17571431 17571463 -100291164 + (CA)n Simple_repeat Simple_repeat 1 32 0 * 1914 163 38 36 chr9 17572098 17572654 -100289973 + MLT2A2 LTR ERVL 1 554 0 1407 132 0 4 chr9 17572769 17572997 -100289630 - L1PA16 LINE L1 -332 5834 5608 250 368 70 0 chr9 17574075 17574189 -100288438 + MER91A DNA MER1_type 40 161 -35 200 242 61 15 chr9 17574190 17574256 -100288371 + MER91A DNA MER1_type 128 196 0 216 284 27 0 chr9 17574590 17574664 -100287963 + CT-rich Low_complexity Low_complexity 1 76 0 234 0 0 0 chr9 17574862 17574888 -100287739 + (T)n Simple_repeat Simple_repeat 1 26 0 312 312 29 65 chr9 17575621 17575759 -100286868 - MIR3 SINE MIR -12 196 64 780 292 65 11 chr9 17578123 17578591 -100284036 - L1ME LINE L1 -354 5808 5295 2159 68 10 0 chr9 17578608 17578902 -100283725 - L1PA7 LINE L1 0 6154 5858 3127 67 2 0 chr9 17578903 17579333 -100283294 + L1P LINE L1 4840 5270 -876 233 263 54 73 chr9 17579331 17579536 -100283091 - L1ME LINE L1 -863 5283 5083 * 275 272 39 0 chr9 17579680 17579783 -100282844 - L1ME LINE L1 -1302 4844 4738 350 267 38 8 chr9 17579821 17579952 -100282675 - L1ME LINE L1 -1553 4593 4459 7687 34 7 12 chr9 17581070 17582776 -100279851 + L1PA4 LINE L1 4454 6155 0 327 279 127 19 chr9 17586505 17586663 -100275964 - MIR SINE MIR -13 249 75 23 0 0 0 chr9 17587238 17587261 -100275366 + AT_rich Low_complexity Low_complexity 1 23 0 220 274 0 16 chr9 17591153 17591215 -100271412 + CT-rich Low_complexity Low_complexity 1 61 0 369 240 96 0 chr9 17592705 17592809 -100269818 + MIR SINE MIR 149 262 0 354 239 179 16 chr9 17593029 17593213 -100269414 - MIR SINE MIR -29 233 20 749 275 94 43 chr9 17594346 17594803 -100267824 + L2 LINE L2 2776 3237 -76 4796 25 0 0 chr9 17594866 17595454 -100267173 - L1PA3 LINE L1 -1499 4647 4060 7851 17 0 0 chr9 17595456 17596954 -100265673 + L1PA3 LINE L1 4658 6155 0 24 53 0 0 chr9 17597032 17597070 -100265557 + AT_rich Low_complexity Low_complexity 1 38 0 772 182 0 15 chr9 17597833 17597965 -100264662 + FLAM_C SINE Alu 1 130 -3 21 57 0 0 chr9 17598415 17598450 -100264177 + AT_rich Low_complexity Low_complexity 1 35 0 1175 159 224 4 chr9 17599217 17599449 -100263178 - AluJb SINE Alu -29 283 1 335 369 35 0 chr9 17600146 17600287 -100262340 - MIR3 SINE MIR -23 185 40 224 244 0 0 chr9 17600554 17600599 -100262028 + L3 LINE CR1 1526 1570 -7 195 250 204 68 chr9 17602603 17602735 -100259892 + MIR3 SINE MIR 16 165 -43 607 136 27 0 chr9 17603179 17603289 -100259338 - L1MB4 LINE L1 -66 6114 6002 189 263 88 0 chr9 17604219 17604299 -100258328 - MIR SINE MIR 0 262 176 203 324 0 81 chr9 17604342 17604453 -100258174 - MER5B DNA MER1_type -1 177 76 673 180 25 8 chr9 17606353 17606475 -100256152 + FLAM_A SINE Alu 1 124 -9 263 266 9 35 chr9 17606490 17606603 -100256024 + (TA)n Simple_repeat Simple_repeat 1 110 0 503 312 65 39 chr9 17606686 17606928 -100255699 - MIR SINE MIR -11 251 9 489 283 22 60 chr9 17606994 17607178 -100255449 - MER5B DNA MER1_type -1 177 1 250 343 63 74 chr9 17607257 17607997 -100254630 - L2 LINE L2 -55 3217 2415 494 239 30 60 chr9 17608891 17609058 -100253569 + MIR SINE MIR 50 211 -51 374 333 85 12 chr9 17609797 17609962 -100252665 + MIR3 SINE MIR 31 207 -1 256 348 169 20 chr9 17610887 17611088 -100251539 - L2 LINE L2 0 3272 3042 2721 161 51 13 chr9 17611113 17611646 -100250981 - MER68 LTR ERV1 -9 553 1 283 227 125 11 chr9 17611924 17612012 -100250615 - L2 LINE L2 -20 3252 3155 254 341 77 35 chr9 17612678 17612887 -100249740 + MIR SINE MIR 40 261 -1 279 295 115 0 chr9 17613414 17613536 -100249091 - MIR SINE MIR -125 137 2 398 326 157 7 chr9 17615469 17615616 -100247011 + MIR SINE MIR 13 181 -81 2633 43 0 3 chr9 17615761 17616065 -100246562 - AluY SINE Alu -2 309 7 22 103 0 0 chr9 17618591 17618669 -100243958 + AT_rich Low_complexity Low_complexity 1 78 0 3392 177 97 34 chr9 17618698 17619559 -100243068 + L1MB4 LINE L1 5259 6178 -2 364 132 15 15 chr9 17619577 17619645 -100242982 + L1MB4 LINE L1 6111 6178 -2 571 311 156 37 chr9 17619903 17620665 -100241962 + L2 LINE L2 1455 2307 -1007 1491 146 65 4 chr9 17620686 17620932 -100241695 + AluJb SINE Alu 37 297 -15 216 97 0 0 chr9 17622318 17622349 -100240278 + (T)n Simple_repeat Simple_repeat 1 31 0 792 188 110 35 chr9 17623548 17623803 -100238824 - MER102a DNA MER1_type -23 307 34 213 226 177 0 chr9 17624416 17624478 -100238149 + L2 LINE L2 3182 3254 -18 194 293 132 70 chr9 17624543 17624884 -100237743 + L2 LINE L2 1898 2259 -1055 1277 228 34 48 chr9 17624913 17625268 -100237359 + MLT1B LTR MaLR 1 350 -40 55 40 0 0 chr9 17625628 17625704 -100236923 + AT_rich Low_complexity Low_complexity 1 76 0 700 304 89 40 chr9 17627418 17627790 -100234837 + MLT1J2 LTR MaLR 59 448 -2 7995 26 0 0 chr9 17627851 17628829 -100233798 - L1PA5 LINE L1 -11 6143 5160 3134 61 0 0 chr9 17628829 17629222 -100233405 + L1P LINE L1 4705 5097 -1049 1855 155 0 4 chr9 17629761 17630039 -100232588 - AluSx SINE Alu -35 277 1 21 0 0 0 chr9 17631284 17631305 -100231322 + AT_rich Low_complexity Low_complexity 1 21 0 236 371 86 63 chr9 17731386 17731701 -100130926 + L2 LINE L2 2949 3270 -2 234 0 0 0 chr9 17731963 17731989 -100130638 + (A)n Simple_repeat Simple_repeat 1 26 0 579 164 82 8 chr9 17732700 17732822 -100129805 - L1MC4a LINE L1 -1907 5901 5771 311 199 71 35 chr9 17732894 17733035 -100129592 - L1MC4a LINE L1 -2350 5458 5313 202 185 37 0 chr9 17733146 17733200 -100129427 + T-rich Low_complexity Low_complexity 2 57 0 1831 150 7 0 chr9 17733391 17733665 -100128962 - AluJb SINE Alu -36 276 1 1889 76 35 111 chr9 17734495 17734811 -100127816 - AluSq SINE Alu -21 292 1 2220 82 0 0 chr9 17734951 17735267 -100127360 - AluY SINE Alu 0 316 1 561 291 44 0 chr9 17738624 17738782 -100123845 + MIR SINE MIR 53 217 -45 1951 122 51 0 chr9 17739555 17739873 -100122754 + AluSq SINE Alu 1 333 0 1629 176 29 23 chr9 17740003 17740309 -100122318 - AluJo SINE Alu -4 308 1 38 22 0 0 chr9 17740309 17740354 -100122273 + AT_rich Low_complexity Low_complexity 1 45 0 21 57 0 0 chr9 17741698 17741733 -100120894 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr9 17742713 17742738 -100119889 + AT_rich Low_complexity Low_complexity 1 25 0 192 40 0 0 chr9 17743646 17743671 -100118956 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2470 65 7 0 chr9 17744852 17745159 -100117468 + AluY SINE Alu 1 309 -2 2009 144 20 0 chr9 17745296 17745602 -100117025 - AluSx SINE Alu 0 312 1 237 65 0 0 chr9 17745949 17745980 -100116647 + (TG)n Simple_repeat Simple_repeat 2 32 0 2052 142 0 10 chr9 17746725 17747035 -100115592 + AluJo SINE Alu 1 307 -5 1882 174 0 7 chr9 17747046 17747350 -100115277 + AluJo SINE Alu 2 303 -9 1717 174 20 30 chr9 17749330 17749634 -100112993 + AluJo SINE Alu 1 301 -11 249 376 32 0 chr9 17750355 17750448 -100112179 + L2 LINE L2 3137 3232 -40 2341 110 0 0 chr9 17750729 17751029 -100111598 + AluSg SINE Alu 1 300 -10 1083 115 29 40 chr9 17751031 17751205 -100111422 + AluSg/x SINE Alu 134 305 -5 1963 115 4 11 chr9 17751402 17751681 -100110946 + AluSq SINE Alu 1 277 -36 218 28 0 56 chr9 17751681 17751717 -100110910 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 263 29 0 0 chr9 17751717 17751751 -100110876 + AluSq/x SINE Alu 88 121 -182 508 269 108 21 chr9 17752859 17753045 -100109582 - MIR SINE MIR -56 206 5 990 186 0 0 chr9 17753135 17753307 -100109320 - FAM SINE Alu -3 172 1 209 280 67 13 chr9 17753848 17753923 -100108704 - MIR SINE MIR -62 146 68 1473 199 59 4 chr9 17755645 17755916 -100106711 - AluJo SINE Alu -15 297 12 914 275 14 0 chr9 17756838 17757045 -100105582 - MIR SINE MIR -46 216 7 2231 132 0 3 chr9 17758177 17758487 -100104140 + AluSx SINE Alu 1 309 -3 27 0 0 0 chr9 17758615 17758642 -100103985 + AT_rich Low_complexity Low_complexity 1 27 0 520 286 82 48 chr9 17758669 17758900 -100103727 + MIR SINE MIR 23 261 -1 206 313 0 0 chr9 17759181 17759229 -100103398 - MIR SINE MIR -129 79 32 2257 122 14 11 chr9 17759336 17759704 -100102923 - L1PB1 LINE L1 -1 6150 5782 245 52 36 119 chr9 17759753 17759947 -100102680 + (TA)n Simple_repeat Simple_repeat 2 179 0 694 110 0 71 chr9 17759962 17759985 -100102642 - L1PB1 LINE L1 -356 5795 5772 375 23 0 0 chr9 17759985 17760029 -100102598 + (CA)n Simple_repeat Simple_repeat 2 45 0 694 110 0 71 chr9 17760029 17760132 -100102495 - L1PB1 LINE L1 -379 5772 5678 468 320 23 27 chr9 17760328 17760547 -100102080 + L2 LINE L2 3092 3309 -4 229 232 27 80 chr9 17760621 17760733 -100101894 + MIR SINE MIR 90 195 -67 22 0 0 0 chr9 17761351 17761373 -100101254 + AT_rich Low_complexity Low_complexity 1 22 0 233 0 62 0 chr9 17761749 17761781 -100100846 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2466 105 0 0 chr9 17761799 17762112 -100100515 + AluSq SINE Alu 1 313 0 454 273 62 31 chr9 17762296 17762457 -100100170 - MER91A DNA MER1_type -2 194 29 183 284 15 30 chr9 17762554 17762621 -100100006 - L3 LINE CR1 -610 967 902 686 286 158 53 chr9 17762844 17763015 -100099612 + L2 LINE L2 2570 2722 -591 1682 65 0 0 chr9 17763015 17763229 -100099398 - L1PA6 LINE L1 0 6154 5941 686 286 158 53 chr9 17763229 17763557 -100099070 + L2 LINE L2 2722 3014 -299 2280 117 0 0 chr9 17763557 17763856 -100098771 + AluSc SINE Alu 1 299 -10 686 286 158 53 chr9 17763856 17764027 -100098600 + L2 LINE L2 3014 3311 -2 319 353 152 31 chr9 17764031 17764445 -100098182 + L2 LINE L2 2808 3271 -1 185 241 103 83 chr9 17766315 17766460 -100096167 + L2 LINE L2 2276 2423 -891 231 291 36 0 chr9 17767360 17767415 -100095212 - L2 LINE L2 -93 3179 3123 2808 59 3 0 chr9 17767526 17767880 -100094747 + THE1A LTR MaLR 1 355 0 522 149 149 0 chr9 17768632 17768739 -100093888 - MER3 DNA MER1_type 0 209 87 626 190 110 17 chr9 17768739 17768976 -100093651 + MER3 DNA MER1_type 2366 2624 0 187 247 79 90 chr9 17770783 17770872 -100091755 + MIR SINE MIR 61 148 -114 1606 171 61 0 chr9 17770937 17771217 -100091410 + AluJo SINE Alu 1 297 -15 1108 179 66 14 chr9 17772112 17772324 -100090303 - AluJo SINE Alu -5 307 85 333 62 0 0 chr9 17772814 17772862 -100089765 + (TG)n Simple_repeat Simple_repeat 2 49 0 23 0 0 0 chr9 17775613 17775636 -100086991 + AT_rich Low_complexity Low_complexity 1 23 0 405 272 69 52 chr9 17775918 17776091 -100086536 - MIR SINE MIR -5 257 82 1330 118 68 0 chr9 17776327 17776547 -100086080 - LTR12 LTR ERV1 0 714 480 292 224 31 20 chr9 17776548 17776646 -100085981 - LTR30 LTR ERV1 -80 642 544 4079 143 38 57 chr9 17776646 17777621 -100085006 - pTR5 LTR ERV1 -413 2025 741 497 236 93 125 chr9 17777724 17777940 -100084687 + MIR SINE MIR 38 246 -16 265 275 46 9 chr9 17778345 17778454 -100084173 + L1MC4 LINE L1 7929 8041 -1 2318 107 7 0 chr9 17778666 17778976 -100083651 - AluSx SINE Alu 0 312 1 675 311 122 12 chr9 17779544 17779888 -100082739 + L3 LINE CR1 1055 1436 -141 664 211 0 14 chr9 17780674 17780816 -100081811 - FRAM SINE Alu -17 159 20 432 294 91 91 chr9 17781210 17781519 -100081108 - L2 LINE L2 0 3272 2964 2338 104 7 0 chr9 17784046 17784353 -100078274 - AluSx SINE Alu -3 309 1 196 329 71 0 chr9 17784402 17784472 -100078155 - MIR SINE MIR -81 127 53 25 0 0 0 chr9 17784472 17784497 -100078130 + AT_rich Low_complexity Low_complexity 1 25 0 2702 87 0 3 chr9 17785817 17786173 -100076454 - THE1A LTR MaLR 0 355 1 11277 99 8 13 chr9 17786173 17786354 -100076273 - THE1A-int LTR MaLR 0 1580 1399 2379 97 0 0 chr9 17786354 17786653 -100075974 + AluSg SINE Alu 1 299 -11 11277 99 8 13 chr9 17786653 17787649 -100074978 - THE1A-int LTR MaLR -181 1399 412 2501 85 0 0 chr9 17787649 17787956 -100074671 + AluY SINE Alu 1 307 -4 11277 99 8 13 chr9 17787956 17788366 -100074261 - THE1A-int LTR MaLR -1168 412 1 2537 104 3 3 chr9 17788366 17788721 -100073906 - THE1A LTR MaLR 0 355 1 471 287 84 84 chr9 17789078 17789257 -100073370 + MIR SINE MIR 12 193 -69 2362 93 10 0 chr9 17789257 17789559 -100073068 + AluSc SINE Alu 3 307 -2 471 287 84 84 chr9 17789559 17789630 -100072997 + MIR SINE MIR 192 262 0 1066 149 11 6 chr9 17789741 17789915 -100072712 + AluJb SINE Alu 137 311 -1 6244 13 0 5 chr9 17790101 17790860 -100071767 - L1HS LINE L1 -1 6154 5400 1740 89 0 0 chr9 17790960 17791173 -100071454 - AluSg SINE Alu -97 213 1 296 26 0 0 chr9 17791378 17791417 -100071210 - L1P LINE L1 -1979 4167 4129 2024 144 7 0 chr9 17791783 17792082 -100070545 - AluSx SINE Alu -11 301 1 184 349 15 83 chr9 17792165 17792297 -100070330 - L2 LINE L2 -535 2779 2657 693 119 10 0 chr9 17792489 17792590 -100070037 + AluSq SINE Alu 110 211 -102 23 33 0 0 chr9 17792652 17792682 -100069945 + AT_rich Low_complexity Low_complexity 1 30 0 29 28 0 0 chr9 17792834 17792870 -100069757 + AT_rich Low_complexity Low_complexity 1 36 0 1998 159 7 0 chr9 17793115 17793417 -100069210 - AluSx SINE Alu -3 309 6 307 162 0 4 chr9 17793417 17793477 -100069150 - Alu SINE Alu -259 44 1 2776 13 0 0 chr9 17793640 17793944 -100068683 + AluYa5 SINE Alu 1 304 -7 294 327 95 38 chr9 17796352 17796563 -100066064 - MIR SINE MIR -6 256 34 1953 150 7 0 chr9 17796587 17796895 -100065732 - AluSx SINE Alu 0 310 1 279 262 0 48 chr9 17798405 17798489 -100064138 + MIR SINE MIR 183 262 0 2586 181 52 17 chr9 17799364 17799907 -100062720 + MER68 LTR ERV1 1 562 0 1002 85 0 0 chr9 17800685 17800815 -100061812 - Alu SINE Alu -10 300 171 2286 107 0 3 chr9 17801429 17801727 -100060900 - AluSq SINE Alu -16 297 1 1942 116 11 21 chr9 17802643 17802928 -100059699 + AluJo SINE Alu 12 293 -19 23 33 0 0 chr9 17804472 17804502 -100058125 + AT_rich Low_complexity Low_complexity 1 30 0 277 154 0 0 chr9 17805351 17805403 -100057224 - MER53 DNA DNA -137 52 1 2377 87 0 0 chr9 17805496 17805794 -100056833 + AluSc SINE Alu 1 298 -11 643 289 125 0 chr9 17807275 17807507 -100055120 + MIR SINE MIR 2 262 0 259 278 230 0 chr9 17807565 17807691 -100054936 + MIR SINE MIR 3 157 -105 631 167 151 23 chr9 17808999 17809276 -100053351 + MER33 DNA MER1_type 1 310 -14 1837 174 23 0 chr9 17809279 17809584 -100053043 - AluJb SINE Alu 0 312 1 1908 163 13 0 chr9 17816694 17817000 -100045627 - AluJb SINE Alu -1 311 2 260 411 0 0 chr9 17817014 17817104 -100045523 + L2 LINE L2 3134 3223 -49 378 168 147 89 chr9 17817602 17817793 -100044834 + L1ME4a LINE L1 5854 6055 -66 297 253 121 0 chr9 17818288 17818371 -100044256 - MIR SINE MIR -154 108 16 29 47 0 0 chr9 17818536 17818579 -100044048 + AT_rich Low_complexity Low_complexity 1 43 0 2892 223 155 104 chr9 17818598 17819059 -100043568 - Charlie2a DNA MER1_type -537 2325 1889 814 164 15 0 chr9 17819059 17819193 -100043434 - AluSq/x SINE Alu -176 136 1 2892 223 155 104 chr9 17819193 17820502 -100042125 - Charlie2a DNA MER1_type -973 1889 290 2126 130 0 7 chr9 17820502 17820809 -100041818 - AluJb SINE Alu -7 305 1 2892 223 155 104 chr9 17820809 17821115 -100041512 - Charlie2a DNA MER1_type -2572 290 1 2053 130 3 3 chr9 17821273 17821574 -100041053 - AluSq SINE Alu -12 301 1 1229 219 3 56 chr9 17821775 17822095 -100040532 - AluJo SINE Alu -4 308 6 306 127 0 0 chr9 17822102 17822165 -100040462 + Charlie2a DNA MER1_type 960 1022 -1840 944 150 61 11 chr9 17822301 17822481 -100040146 + MER5A DNA MER1_type 1 189 0 247 354 24 6 chr9 17822751 17822915 -100039712 - L2 LINE L2 -1303 2011 1845 308 253 75 42 chr9 17823009 17823129 -100039498 + MIR SINE MIR 76 198 -64 1155 55 88 22 chr9 17823139 17823321 -100039306 + MER30 DNA MER1_type 1 194 -36 2325 93 0 17 chr9 17823578 17823880 -100038747 - AluSg SINE Alu -12 298 2 225 303 0 34 chr9 17824033 17824122 -100038505 - MLT1K LTR MaLR -69 519 434 328 348 26 30 chr9 17824224 17824384 -100038243 - MLT1K LTR MaLR -307 281 121 1662 156 57 27 chr9 17824384 17824685 -100037942 + AluJb SINE Alu 3 312 0 328 348 26 30 chr9 17824685 17824791 -100037836 - MLT1K LTR MaLR -467 121 16 2074 135 0 10 chr9 17825009 17825313 -100037314 - AluSx SINE Alu -11 301 1 2373 99 0 0 chr9 17825748 17826042 -100036585 - AluSc SINE Alu -15 294 1 716 204 15 68 chr9 17826186 17826221 -100036406 + MER58A DNA MER1_type 30 65 -2355 1661 172 38 7 chr9 17826221 17826512 -100036115 - AluJb SINE Alu -12 300 1 716 204 15 68 chr9 17826512 17826682 -100035945 + MER58A DNA MER1_type 65 224 0 1848 156 10 10 chr9 17826708 17827015 -100035612 - AluJb SINE Alu -5 307 1 2348 65 3 16 chr9 17827207 17827513 -100035114 + AluY SINE Alu 1 302 -9 1523 67 95 0 chr9 17832162 17832372 -100030255 + MER30 DNA MER1_type 1 230 0 34 0 0 0 chr9 17832506 17832540 -100030087 + AT_rich Low_complexity Low_complexity 1 34 0 2198 133 3 0 chr9 17833824 17834133 -100028494 + AluSx SINE Alu 1 310 -2 262 348 62 29 chr9 17834698 17834908 -100027719 + L2 LINE L2 2841 3057 -256 247 272 58 58 chr9 17835505 17835608 -100027019 + L2 LINE L2 3154 3256 -16 538 311 85 14 chr9 17836982 17837194 -100025433 + MIR SINE MIR 34 260 -2 234 273 0 0 chr9 17837373 17837428 -100025199 + (CATATA)n Simple_repeat Simple_repeat 4 58 0 224 361 69 15 chr9 17837441 17837571 -100025056 + MIR SINE MIR 3 139 -123 2043 135 30 3 chr9 17837696 17837993 -100024634 - AluSx SINE Alu -7 305 1 223 313 16 0 chr9 17840105 17840169 -100022458 + CT-rich Low_complexity Low_complexity 1 65 0 207 0 0 0 chr9 17842349 17842372 -100020255 + (A)n Simple_repeat Simple_repeat 1 23 0 1174 76 6 6 chr9 17842645 17842817 -100019810 + (TTTCC)n Simple_repeat Simple_repeat 4 175 0 858 156 6 11 chr9 17842823 17843003 -100019624 + CT-rich Low_complexity Low_complexity 2 180 0 1495 174 0 52 chr9 17843010 17843298 -100019329 - AluJb SINE Alu -39 273 1 196 268 54 18 chr9 17843498 17843554 -100019073 - L2 LINE L2 -71 3201 3144 258 256 48 77 chr9 17846595 17846763 -100015864 - MLT1H LTR MaLR -264 285 123 1564 175 18 94 chr9 17849580 17850014 -100012613 + MER63 DNA MER1_type 660 1060 0 22 35 0 0 chr9 17850682 17850711 -100011916 + AT_rich Low_complexity Low_complexity 1 29 0 1833 139 48 20 chr9 17852389 17852684 -100009943 + AluSx SINE Alu 1 303 -9 31 0 0 0 chr9 17852847 17852878 -100009749 + AT_rich Low_complexity Low_complexity 1 31 0 716 213 92 42 chr9 17853266 17853681 -100008946 + MLT1C LTR MaLR 21 467 0 535 268 62 18 chr9 17853689 17853913 -100008714 - L1MC4a LINE L1 -1959 5849 5616 711 193 48 30 chr9 17854259 17854425 -100008202 - AluSg/x SINE Alu -8 304 136 353 329 91 18 chr9 17854756 17854975 -100007652 + MIR SINE MIR 28 262 0 236 228 53 0 chr9 17854993 17855050 -100007577 - MIR SINE MIR -91 171 112 1930 111 55 0 chr9 17855381 17855652 -100006975 + AluSx SINE Alu 2 287 -25 185 278 0 19 chr9 17855719 17855773 -100006854 - L2 LINE L2 0 3272 3220 409 304 65 30 chr9 17856035 17856203 -100006424 + MIR3 SINE MIR 19 192 -16 305 273 124 50 chr9 17856454 17856696 -100005931 - L2 LINE L2 -353 2961 2702 21 0 0 0 chr9 17857789 17857810 -100004817 + AT_rich Low_complexity Low_complexity 1 21 0 362 156 26 0 chr9 17861772 17861849 -100000778 - Charlie7 DNA MER1_type -2 2610 2532 1196 209 110 11 chr9 17862136 17862500 -100000127 - L1ME1 LINE L1 -5 6161 5762 180 0 0 0 chr9 17863032 17863052 -99999575 + (T)n Simple_repeat Simple_repeat 1 20 0 1588 119 0 9 chr9 17863066 17863293 -99999334 - AluSq SINE Alu -88 225 1 1423 188 89 0 chr9 17864802 17865073 -99997554 - AluJo SINE Alu -17 295 1 180 376 20 0 chr9 17865865 17865966 -99996661 + MIR SINE MIR 34 136 -126 1614 231 81 21 chr9 17866511 17866866 -99995761 - L1MC4a LINE L1 -36 7772 7373 2582 108 11 0 chr9 17866866 17867226 -99995401 - THE1B LTR MaLR 0 364 1 1614 231 81 21 chr9 17867226 17867402 -99995225 - L1MC4a LINE L1 -435 7373 7209 28 0 0 0 chr9 17870919 17870947 -99991680 + AT_rich Low_complexity Low_complexity 1 28 0 2071 143 24 21 chr9 17874103 17874439 -99988188 + MER1B DNA MER1_type 1 337 0 977 175 0 18 chr9 17877781 17877947 -99984680 + AluSx SINE Alu 1 163 -149 221 250 0 0 chr9 17879596 17879680 -99982947 + (CATA)n Simple_repeat Simple_repeat 1 84 0 273 98 0 0 chr9 17882719 17882760 -99979867 + (TC)n Simple_repeat Simple_repeat 2 42 0 237 196 0 0 chr9 17883366 17883422 -99979205 + (TA)n Simple_repeat Simple_repeat 1 56 0 243 0 0 0 chr9 17885185 17885212 -99977415 + (TG)n Simple_repeat Simple_repeat 1 27 0 210 71 0 0 chr9 17889322 17889350 -99973277 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 1525 208 69 5 chr9 17889659 17890063 -99972564 - L1MB8 LINE L1 -1 6177 5748 1477 184 32 11 chr9 17891543 17891820 -99970807 - AluJb SINE Alu -29 283 1 2271 108 0 7 chr9 17891860 17892165 -99970462 + AluSq SINE Alu 1 303 -10 1063 109 0 0 chr9 17892235 17892373 -99970254 - AluJo SINE Alu -171 141 4 22 0 0 0 chr9 17892448 17892470 -99970157 + AT_rich Low_complexity Low_complexity 1 22 0 2178 106 0 3 chr9 17892545 17892855 -99969772 + AluSg SINE Alu 1 309 0 2020 158 3 0 chr9 17892867 17893165 -99969462 + AluSx SINE Alu 1 299 -13 22 0 0 0 chr9 17893762 17893784 -99968843 + AT_rich Low_complexity Low_complexity 1 22 0 200 250 98 31 chr9 17894132 17894264 -99968363 - MIR SINE MIR -12 250 111 268 184 44 105 chr9 17894325 17894439 -99968188 - L2 LINE L2 -83 3230 3124 1153 155 0 22 chr9 17894972 17895153 -99967474 + AluJb SINE Alu 134 310 -2 506 292 64 28 chr9 17895167 17895388 -99967239 + MIR SINE MIR 36 262 0 21 57 0 0 chr9 17895396 17895431 -99967196 + AT_rich Low_complexity Low_complexity 1 35 0 194 0 39 0 chr9 17895732 17895758 -99966869 + (GA)n Simple_repeat Simple_repeat 1 27 0 36 40 0 0 chr9 17897236 17897286 -99965341 + AT_rich Low_complexity Low_complexity 1 50 0 381 22 0 0 chr9 17899416 17899462 -99963165 + (TG)n Simple_repeat Simple_repeat 2 47 0 872 133 0 14 chr9 17900646 17900789 -99961838 - MLT1B LTR MaLR 0 390 250 384 59 0 0 chr9 17900900 17900951 -99961676 + (CA)n Simple_repeat Simple_repeat 2 52 0 216 214 0 0 chr9 17901035 17901077 -99961550 + A-rich Low_complexity Low_complexity 1 42 0 192 158 0 0 chr9 17902440 17902478 -99960149 + T-rich Low_complexity Low_complexity 1 38 0 488 59 15 0 chr9 17906848 17906916 -99955711 + (TC)n Simple_repeat Simple_repeat 2 70 0 185 32 0 65 chr9 17909869 17909900 -99952727 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1194 153 70 0 chr9 17910762 17910977 -99951650 + L1PA16 LINE L1 5928 6157 -9 357 328 54 44 chr9 17914987 17915191 -99947436 + L1ME LINE L1 388 593 -5477 2533 129 39 9 chr9 17915225 17915660 -99946967 - L1MB3 LINE L1 -7 6176 5729 1056 220 168 18 chr9 17915895 17916222 -99946405 + MLT1E LTR MaLR 218 593 0 2394 256 84 18 chr9 17916222 17917337 -99945290 + L1ME LINE L1 574 1762 -4318 659 289 15 15 chr9 17917338 17917601 -99945026 + L1ME1 LINE L1 5889 6151 -15 223 307 71 66 chr9 17918276 17918488 -99944139 - L2 LINE L2 -1190 2124 1912 243 103 0 0 chr9 17918824 17918863 -99943764 + (GA)n Simple_repeat Simple_repeat 2 40 0 849 169 110 144 chr9 17918864 17919273 -99943354 + MSTD LTR MaLR 1 395 -1 432 0 0 0 chr9 17919427 17919475 -99943152 + (TG)n Simple_repeat Simple_repeat 2 49 0 275 325 53 9 chr9 17919706 17919820 -99942807 - MIR SINE MIR -27 235 117 234 0 0 0 chr9 17920075 17920101 -99942526 + (TCTA)n Simple_repeat Simple_repeat 1 26 0 39 68 0 0 chr9 17920110 17920184 -99942443 + AT_rich Low_complexity Low_complexity 1 74 0 408 232 84 112 chr9 17920587 17920932 -99941695 - LTR67 LTR ERVL -1 556 153 1230 273 54 14 chr9 17921008 17921378 -99941249 + MLT1I LTR MaLR 25 409 0 497 286 132 18 chr9 17973080 17973300 -99889327 + MIR SINE MIR 4 248 -14 1315 96 0 0 chr9 17973409 17973575 -99889052 + AluSg/x SINE Alu 134 299 -13 359 254 18 36 chr9 17973710 17973820 -99888807 - MER5B DNA MER1_type -3 175 68 21 0 0 0 chr9 17975576 17975597 -99887030 + AT_rich Low_complexity Low_complexity 1 21 0 382 303 92 37 chr9 17975832 17976050 -99886577 + MIR SINE MIR 33 262 0 1384 203 58 14 chr9 17976655 17977014 -99885613 + L1ME2 LINE L1 5790 6164 0 24 32 0 0 chr9 17980788 17980819 -99881808 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr9 17982140 17982161 -99880466 + AT_rich Low_complexity Low_complexity 1 21 0 829 196 106 5 chr9 17986247 17986446 -99876181 + MER20 DNA MER1_type 1 219 0 1622 159 9 45 chr9 17986753 17987086 -99875541 - L1MA10 LINE L1 -11 6323 6003 282 277 0 0 chr9 17989291 17989356 -99873271 + L2 LINE L2 3249 3313 0 1066 251 73 51 chr9 17989544 17989585 -99873042 + L2 LINE L2 2881 2920 -393 2281 92 7 0 chr9 17989585 17989878 -99872749 + AluSc SINE Alu 4 298 -11 1066 251 73 51 chr9 17989878 17990247 -99872380 + L2 LINE L2 2920 3300 -13 2267 94 3 0 chr9 17990425 17990723 -99871904 + AluSp SINE Alu 1 299 -14 316 285 99 41 chr9 17990905 17990931 -99871696 - MIR SINE MIR -31 231 208 1270 186 86 34 chr9 17990931 17991258 -99871369 - MER2 DNA MER2_type 0 344 1 316 285 99 41 chr9 17991258 17991416 -99871211 - MIR SINE MIR -54 208 33 246 262 19 78 chr9 17991506 17991609 -99871018 + MIR SINE MIR 47 143 -119 289 382 52 15 chr9 17992540 17992676 -99869951 + L3 LINE CR1 1007 1147 -430 2154 144 7 0 chr9 17992706 17993012 -99869615 + AluSx SINE Alu 1 308 -4 2153 98 10 10 chr9 17993383 17993680 -99868947 - AluSg SINE Alu -13 297 1 180 222 0 0 chr9 17993767 17993803 -99868824 + MIR3 SINE MIR 134 169 -39 202 65 22 43 chr9 17994945 17994991 -99867636 + (CAAAAA)n Simple_repeat Simple_repeat 2 46 0 2168 130 0 3 chr9 17995339 17995752 -99866875 + AluSq SINE Alu 1 412 0 395 91 0 15 chr9 17997311 17997377 -99865250 + (CA)n Simple_repeat Simple_repeat 1 65 0 287 318 28 9 chr9 17998004 17998111 -99864516 - L2 LINE L2 -17 3296 3188 242 298 65 57 chr9 17998237 17998361 -99864266 - L2 LINE L2 -3 3269 3145 449 216 134 0 chr9 17998429 17998526 -99864101 - FLAM_A SINE Alu -32 110 1 809 219 7 0 chr9 18000586 18000737 -99861890 - FRAM SINE Alu -30 146 1 2427 58 3 0 chr9 18002468 18002762 -99859865 + AluY SINE Alu 1 295 -16 204 40 0 0 chr9 18003696 18003721 -99858906 + (CA)n Simple_repeat Simple_repeat 2 26 0 1519 166 23 65 chr9 18005507 18005815 -99856812 - AluSx SINE Alu -17 295 1 258 281 57 0 chr9 18005936 18006037 -99856590 + MIR SINE MIR 74 185 -23 1689 103 64 57 chr9 18006037 18006319 -99856308 + AluSx SINE Alu 1 284 -28 214 226 0 19 chr9 18006530 18006583 -99856044 + (TA)n Simple_repeat Simple_repeat 1 52 0 2015 141 0 0 chr9 18007543 18007827 -99854800 + AluSx SINE Alu 1 284 -28 264 30 0 0 chr9 18007827 18007860 -99854767 + (CA)n Simple_repeat Simple_repeat 2 34 0 211 329 13 0 chr9 18008294 18008373 -99854254 + GA-rich Low_complexity Low_complexity 3 82 0 2092 81 61 10 chr9 18008520 18008816 -99853811 - AluSx SINE Alu -1 311 1 25 31 0 0 chr9 18009536 18009568 -99853059 + AT_rich Low_complexity Low_complexity 1 32 0 180 0 0 0 chr9 18010468 18010488 -99852139 + (TTG)n Simple_repeat Simple_repeat 2 21 0 21 36 0 0 chr9 18010645 18010673 -99851954 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr9 18010809 18010840 -99851787 + AT_rich Low_complexity Low_complexity 1 31 0 660 288 116 13 chr9 18015354 18015587 -99847040 - MIR SINE MIR -1 261 5 224 324 162 0 chr9 18016058 18016163 -99846464 + L2 LINE L2 3174 3295 -18 541 302 56 22 chr9 18017231 18017410 -99845217 - MIR SINE MIR -31 231 47 21 0 0 0 chr9 18017450 18017471 -99845156 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 18018714 18018736 -99843891 + AT_rich Low_complexity Low_complexity 1 22 0 216 111 0 0 chr9 18019359 18019395 -99843232 + (CA)n Simple_repeat Simple_repeat 2 37 0 216 0 0 0 chr9 18019415 18019439 -99843188 + (A)n Simple_repeat Simple_repeat 1 24 0 1054 189 173 21 chr9 18020467 18020710 -99841917 + AluJo SINE Alu 5 284 -18 231 36 0 0 chr9 18020710 18020738 -99841889 + (CATA)n Simple_repeat Simple_repeat 2 29 0 269 159 0 0 chr9 18020758 18020802 -99841825 + Alu SINE Alu 250 293 -9 236 261 35 78 chr9 18021424 18021539 -99841088 - MIR SINE MIR -36 226 117 2376 108 0 0 chr9 18021753 18022060 -99840567 - AluY SINE Alu -4 307 1 2386 93 0 0 chr9 18022061 18022361 -99840266 - AluSx SINE Alu -11 301 2 426 261 128 20 chr9 18022596 18022791 -99839836 + MIR SINE MIR 20 235 -27 2310 100 7 0 chr9 18023100 18023401 -99839226 + AluSx SINE Alu 2 304 -8 565 264 58 17 chr9 18023640 18023814 -99838813 + MER5A DNA MER1_type 1 181 -8 539 204 0 19 chr9 18025540 18025648 -99836979 - FRAM SINE Alu -4 172 67 892 118 0 22 chr9 18025780 18025915 -99836712 - FLAM_C SINE Alu 0 143 12 212 356 63 51 chr9 18025929 18026260 -99836367 + L2 LINE L2 2155 2489 -825 218 341 11 44 chr9 18026851 18026942 -99835685 + L2 LINE L2 3185 3272 0 2013 102 49 0 chr9 18027331 18027615 -99835012 + AluSg SINE Alu 2 299 -11 1782 159 17 10 chr9 18027691 18027987 -99834640 + AluSx SINE Alu 1 298 -14 606 253 116 5 chr9 18028257 18028455 -99834172 + MER58A DNA MER1_type 4 223 -1 2326 71 0 10 chr9 18028660 18028956 -99833671 + AluSp SINE Alu 1 293 -20 21 57 0 0 chr9 18029218 18029253 -99833374 + AT_rich Low_complexity Low_complexity 1 35 0 222 37 0 0 chr9 18029362 18029389 -99833238 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 411 272 51 10 chr9 18029940 18030084 -99832543 - MIR SINE MIR -45 163 8 1238 177 156 0 chr9 18030518 18030761 -99831866 + AluJo SINE Alu 1 281 -31 521 125 11 34 chr9 18030783 18030871 -99831756 - FRAM/FAM SINE Alu -98 78 1 1344 158 150 28 chr9 18030929 18031208 -99831419 + AluSx SINE Alu 1 310 0 213 243 81 14 chr9 18031622 18031696 -99830931 + MIR SINE MIR 117 195 -67 2181 105 10 0 chr9 18031914 18032209 -99830418 + AluSx SINE Alu 4 301 -11 450 325 101 5 chr9 18032973 18033161 -99829466 - MIR SINE MIR -4 258 53 23 33 0 0 chr9 18033547 18033577 -99829050 + AT_rich Low_complexity Low_complexity 1 30 0 27 0 0 0 chr9 18034932 18034959 -99827668 + AT_rich Low_complexity Low_complexity 1 27 0 198 0 0 0 chr9 18035385 18035407 -99827220 + (CCCCCA)n Simple_repeat Simple_repeat 5 26 0 2425 44 0 20 chr9 18037172 18037468 -99825159 + AluY SINE Alu 1 290 -21 2086 136 0 0 chr9 18037955 18038242 -99824385 - AluSx SINE Alu -25 287 1 215 357 10 23 chr9 18038861 18039065 -99823562 + GA-rich Low_complexity Low_complexity 1 201 0 207 0 0 0 chr9 18043746 18043769 -99818858 + (T)n Simple_repeat Simple_repeat 1 23 0 1475 190 3 28 chr9 18044092 18044381 -99818246 + AluJb SINE Alu 1 282 -30 1262 219 12 45 chr9 18045776 18046109 -99816518 + MER102b DNA MER1_type 1 322 -19 22 0 0 0 chr9 18052759 18052781 -99809846 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 18053403 18053424 -99809203 + AT_rich Low_complexity Low_complexity 1 21 0 297 0 0 0 chr9 18055518 18055551 -99807076 + (CA)n Simple_repeat Simple_repeat 1 33 0 267 31 0 0 chr9 18056286 18056318 -99806309 + (CA)n Simple_repeat Simple_repeat 2 33 0 24 0 0 0 chr9 18056855 18056879 -99805748 + AT_rich Low_complexity Low_complexity 1 24 0 192 97 0 0 chr9 18057418 18057449 -99805178 + (CGGG)n Simple_repeat Simple_repeat 3 33 0 224 208 0 0 chr9 18058227 18058275 -99804352 + CT-rich Low_complexity Low_complexity 1 48 0 186 136 0 76 chr9 18060269 18060335 -99802292 + (TCTCCC)n Simple_repeat Simple_repeat 4 64 0 21 36 0 0 chr9 18061078 18061106 -99801521 + AT_rich Low_complexity Low_complexity 1 28 0 210 118 0 0 chr9 18062460 18062494 -99800133 + (A)n Simple_repeat Simple_repeat 1 34 0 1236 110 0 0 chr9 18064036 18064200 -99798427 + AluSq SINE Alu 133 296 -17 189 0 0 0 chr9 18065699 18065720 -99796907 + (A)n Simple_repeat Simple_repeat 1 21 0 1991 121 3 25 chr9 18065792 18066106 -99796521 - AluSx SINE Alu -5 307 1 2004 105 0 0 chr9 18066254 18066512 -99796115 + AluSx SINE Alu 1 258 -54 201 147 0 0 chr9 18066517 18066551 -99796076 + (A)n Simple_repeat Simple_repeat 1 34 0 194 61 0 30 chr9 18066747 18066780 -99795847 + (TTA)n Simple_repeat Simple_repeat 2 33 0 2297 105 0 0 chr9 18066782 18067076 -99795551 - AluSg SINE Alu -16 294 1 2066 103 4 0 chr9 18067135 18067408 -99795219 - AluSp SINE Alu -39 274 1 674 150 9 18 chr9 18067418 18067531 -99795096 - FRAM SINE Alu -24 152 41 2606 62 7 0 chr9 18067543 18067852 -99794775 - AluY SINE Alu 0 311 1 464 167 0 12 chr9 18067852 18067936 -99794691 - AluJo/FLAM SINE Alu -182 130 48 535 230 66 20 chr9 18068092 18068288 -99794339 + L1ME3A LINE L1 5961 6165 -5 21 36 0 0 chr9 18068300 18068328 -99794299 + AT_rich Low_complexity Low_complexity 1 28 0 200 259 52 0 chr9 18069191 18069249 -99793378 - L2 LINE L2 -86 3227 3167 331 345 70 65 chr9 18069493 18069689 -99792938 - L2 LINE L2 -508 2806 2612 2002 132 0 10 chr9 18069689 18069977 -99792650 + AluSq SINE Alu 1 285 -28 331 345 70 65 chr9 18069977 18070224 -99792403 - L2 LINE L2 -702 2612 2361 2226 81 4 0 chr9 18071496 18071768 -99790859 + AluSp SINE Alu 23 295 -18 2362 103 0 0 chr9 18071981 18072282 -99790345 + AluSx SINE Alu 4 304 -8 2369 53 0 11 chr9 18074258 18074571 -99788056 - AluY SINE Alu 0 310 1 499 313 94 0 chr9 18075292 18075493 -99787134 + MIR SINE MIR 13 232 -30 247 287 13 80 chr9 18075542 18075692 -99786935 + Charlie8 DNA MER1_type 10 149 -2268 205 309 60 24 chr9 18076302 18076386 -99786241 - MIR3 SINE MIR -4 204 118 261 255 0 0 chr9 18076521 18076572 -99786055 - MER63 DNA MER1_type -27 1035 985 1838 136 3 7 chr9 18076654 18076941 -99785686 - AluSx SINE Alu -3 309 24 2109 86 4 4 chr9 18077042 18077311 -99785316 + AluY SINE Alu 27 295 -16 711 281 65 5 chr9 18077766 18077983 -99784644 - MIR SINE MIR -11 251 22 405 287 78 24 chr9 18078305 18078472 -99784155 + L1MC4a LINE L1 5773 5948 -1860 1860 157 3 31 chr9 18078569 18078888 -99783739 + AluJb SINE Alu 3 312 0 2171 106 13 0 chr9 18078899 18079200 -99783427 + AluSq SINE Alu 3 307 -6 243 0 0 0 chr9 18079258 18079285 -99783342 + (TA)n Simple_repeat Simple_repeat 2 28 0 25 31 0 0 chr9 18079286 18079318 -99783309 + AT_rich Low_complexity Low_complexity 1 32 0 1570 186 0 18 chr9 18079774 18080053 -99782574 + AluJb SINE Alu 26 299 -13 208 256 120 51 chr9 18080263 18080380 -99782247 + L2 LINE L2 3167 3291 -22 224 247 59 47 chr9 18081107 18081192 -99781435 + L2 LINE L2 3186 3271 -1 346 223 41 8 chr9 18081945 18082066 -99780561 + L1MC4 LINE L1 1995 6983 -1339 2141 98 25 0 chr9 18082084 18082370 -99780257 + AluSx SINE Alu 1 293 -19 2246 110 0 0 chr9 18084892 18085193 -99777434 - AluSx SINE Alu -11 301 1 359 301 102 19 chr9 18085876 18086132 -99776495 + L2 LINE L2 2150 2426 -888 304 284 91 40 chr9 18086147 18086323 -99776304 + LTR68 LTR ERV1 219 403 -337 266 308 91 41 chr9 18086636 18086857 -99775770 + L2 LINE L2 2461 2692 -622 2298 99 0 7 chr9 18087043 18087345 -99775282 + AluY SINE Alu 1 300 -11 254 143 333 0 chr9 18087434 18087518 -99775109 + L2 LINE L2 3199 3310 -3 1624 209 45 57 chr9 18088257 18088681 -99773946 - MLT1D LTR MaLR 0 505 87 1909 134 32 0 chr9 18088681 18088965 -99773662 - AluSg SINE Alu -17 293 1 1624 209 45 57 chr9 18088965 18089051 -99773576 - MLT1D LTR MaLR -418 87 1 2305 81 0 0 chr9 18090062 18090359 -99772268 - AluY SINE Alu -14 297 1 488 171 59 17 chr9 18090704 18090861 -99771766 + MER106B DNA MER1_type 57 223 -13 1845 164 6 16 chr9 18091297 18091609 -99771018 + AluJo SINE Alu 1 309 -3 255 237 66 13 chr9 18093269 18093345 -99769282 - MIR SINE MIR -98 164 85 1942 157 3 3 chr9 18093625 18093924 -99768703 + AluJb SINE Alu 1 299 -13 235 127 18 36 chr9 18095222 18095277 -99767350 + GA-rich Low_complexity Low_complexity 3 56 0 2623 33 0 3 chr9 18096120 18096423 -99766204 - AluY SINE Alu -8 303 2 516 235 71 38 chr9 18096850 18097033 -99765594 - L3b LINE CR1 -212 1371 1183 385 241 37 59 chr9 18098050 18098237 -99764390 - L1MC5 LINE L1 -61 7900 7718 2222 123 3 0 chr9 18098303 18098603 -99764024 - AluSq SINE Alu -12 301 1 392 273 31 23 chr9 18099548 18099676 -99762951 + L2 LINE L2 3167 3295 -18 281 303 50 30 chr9 18099684 18099837 -99762790 - MIR SINE MIR -59 149 46 376 291 184 20 chr9 18099920 18100116 -99762511 + MIR SINE MIR 20 247 -15 1296 131 5 41 chr9 18101004 18101225 -99761402 + AluJb SINE Alu 85 297 -15 1990 134 7 0 chr9 18101226 18101518 -99761109 + AluSx SINE Alu 1 294 -18 261 0 0 0 chr9 18104306 18104335 -99758292 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1875 149 0 3 chr9 18104338 18104620 -99758007 - AluSx SINE Alu -31 281 1 765 243 23 6 chr9 18105384 18105561 -99757066 + MER5A DNA MER1_type 1 180 -9 2051 110 3 3 chr9 18106487 18106777 -99755850 - AluSq SINE Alu -23 290 1 2303 89 0 3 chr9 18107181 18107472 -99755155 + AluSx SINE Alu 1 290 -22 26 0 0 0 chr9 18107472 18107498 -99755129 + AT_rich Low_complexity Low_complexity 1 26 0 186 43 0 0 chr9 18107498 18107521 -99755106 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2409 80 0 3 chr9 18107756 18108058 -99754569 + AluY SINE Alu 1 301 -10 482 234 91 53 chr9 18108112 18108509 -99754118 + L1ME4a LINE L1 5706 6117 -4 196 299 294 5 chr9 18108854 18109038 -99753589 - MIR SINE MIR -13 249 13 1339 155 39 113 chr9 18109347 18109657 -99752970 + AluJo SINE Alu 14 300 -12 1379 147 63 98 chr9 18109937 18110292 -99752335 + L1MB8 LINE L1 5753 6119 -59 2633 55 0 0 chr9 18110292 18110603 -99752024 + AluY SINE Alu 1 311 0 1379 147 63 98 chr9 18110603 18110629 -99751998 + L1MB8 LINE L1 6119 6144 -34 2222 93 0 0 chr9 18110629 18110920 -99751707 + AluSc SINE Alu 1 291 -18 1379 147 63 98 chr9 18110920 18110978 -99751649 + L1MB8 LINE L1 6144 6178 0 1709 132 4 4 chr9 18111691 18111949 -99750678 - AluSx SINE Alu -23 289 32 246 256 48 76 chr9 18111950 18112239 -99750388 + L1ME4a LINE L1 5653 5933 -188 2138 109 0 0 chr9 18112342 18112656 -99749971 + AluSc SINE Alu 1 314 0 372 329 43 101 chr9 18112832 18113227 -99749400 + L2 LINE L2 2901 3272 0 23 33 0 0 chr9 18114225 18114255 -99748372 + AT_rich Low_complexity Low_complexity 1 30 0 313 271 127 8 chr9 18114486 18114604 -99748023 - L2 LINE L2 -40 3232 3101 197 65 32 0 chr9 18114655 18114686 -99747941 + (CTA)n Simple_repeat Simple_repeat 1 32 0 1800 140 31 10 chr9 18115734 18116026 -99746601 - AluSx SINE Alu -14 298 1 432 141 0 65 chr9 18116084 18116176 -99746451 + AluS SINE Alu 221 306 -4 331 169 0 15 chr9 18116183 18116248 -99746379 - MER69 DNA AcHobo -1097 129 66 1152 221 56 9 chr9 18117849 18118170 -99744457 + L1ME1 LINE L1 5831 6166 0 233 213 0 21 chr9 18118588 18118635 -99743992 + L2 LINE L2 3224 3269 -3 * 234 340 110 0 chr9 18118617 18118717 -99743910 + L2 LINE L2 3185 3295 -18 2867 212 158 35 chr9 18118717 18118790 -99743837 - Tigger6a DNA MER2_type -514 1083 1020 2314 69 10 3 chr9 18118790 18119078 -99743549 - AluY SINE Alu -21 290 1 2867 212 158 35 chr9 18119078 18119845 -99742782 - Tigger6a DNA MER2_type -577 1020 108 2549 57 0 0 chr9 18119845 18120142 -99742485 - AluY SINE Alu -14 297 1 2867 212 158 35 chr9 18120142 18120265 -99742362 - Tigger6a DNA MER2_type -1489 108 1 233 299 41 10 chr9 18120487 18120584 -99742043 + MIR SINE MIR 113 212 -50 1722 190 3 7 chr9 18120601 18120901 -99741726 + AluJb SINE Alu 1 299 -13 635 291 82 10 chr9 18120919 18121125 -99741502 - MIR SINE MIR -7 255 35 487 191 148 26 chr9 18122265 18122380 -99740247 - FLAM_A SINE Alu -4 129 1 2089 53 0 109 chr9 18122440 18122778 -99739849 - AluY SINE Alu 0 301 1 427 240 0 10 chr9 18123027 18123131 -99739496 - MLT1L LTR MaLR -361 254 152 911 98 0 0 chr9 18125249 18125371 -99737256 + AluY SINE Alu 184 305 -6 348 148 0 45 chr9 18125371 18125459 -99737168 + (GGAAA)n Simple_repeat Simple_repeat 1 84 0 244 314 82 25 chr9 18125873 18126032 -99736595 - MIR SINE MIR -12 250 83 215 356 135 10 chr9 18126001 18126105 -99736522 + MIR SINE MIR 36 152 -56 * 245 297 80 29 chr9 18126179 18126317 -99736310 - MER117 DNA MER1_type -38 159 15 302 231 133 49 chr9 18127192 18127335 -99735292 - MIR SINE MIR -78 184 30 377 239 113 0 chr9 18127897 18128039 -99734588 - L1ME4a LINE L1 0 6121 5964 1824 150 0 0 chr9 18128080 18128354 -99734273 - AluSx SINE Alu -2 310 37 2255 112 0 0 chr9 18128718 18129021 -99733606 + AluSx SINE Alu 1 303 -9 597 276 148 0 chr9 18131730 18131947 -99730680 - MIR SINE MIR -11 251 3 2376 85 0 0 chr9 18132278 18132571 -99730056 + AluSg SINE Alu 1 293 -17 2341 92 0 3 chr9 18132819 18133124 -99729503 - AluSp SINE Alu -8 305 2 243 125 0 0 chr9 18133203 18133243 -99729384 + (CA)n Simple_repeat Simple_repeat 1 40 0 697 154 0 0 chr9 18133691 18133795 -99728832 + AluJb SINE Alu 1 104 -208 406 163 0 58 chr9 18133801 18133887 -99728740 + AluJ/FRAM SINE Alu 220 300 -2 266 244 22 33 chr9 18184783 18184873 -99677754 - L2 LINE L2 -5 3308 3220 2257 123 0 0 chr9 18184936 18185244 -99677383 + AluSq SINE Alu 2 309 -4 710 299 63 61 chr9 18185857 18186319 -99676308 - LTR33 LTR ERVL 0 521 59 988 149 10 55 chr9 18186484 18186685 -99675942 + MIR SINE MIR 70 261 -1 1131 137 24 161 chr9 18186816 18187020 -99675607 - MER33 DNA MER1_type -2262 323 191 2220 117 7 0 chr9 18187020 18187320 -99675307 - AluSq SINE Alu -11 302 1 1131 137 24 161 chr9 18187320 18187487 -99675140 - MER33 DNA MER1_type -2394 191 3 795 176 15 8 chr9 18187775 18187906 -99674721 + FLAM_C SINE Alu 2 133 0 606 133 0 0 chr9 18188048 18188131 -99674496 + AluSg/x SINE Alu 212 294 -15 2018 141 7 0 chr9 18188207 18188506 -99674121 - AluSx SINE Alu -11 301 1 1435 148 0 59 chr9 18188681 18188937 -99673690 + AluJo SINE Alu 69 309 -3 2283 89 0 3 chr9 18189274 18189565 -99673062 - AluSc SINE Alu -19 290 1 635 300 75 43 chr9 18189565 18189938 -99672689 + MLT1K LTR MaLR 182 566 -22 1699 157 71 40 chr9 18190177 18190528 -99672099 - THE1C LTR MaLR -8 367 6 423 83 0 0 chr9 18190528 18190588 -99672039 + (TCTG)n Simple_repeat Simple_repeat 3 62 0 1158 108 0 0 chr9 18190589 18190747 -99671880 + AluY SINE Alu 140 297 -14 282 344 72 62 chr9 18190829 18191120 -99671507 + L2 LINE L2 2961 3254 -18 1934 240 76 12 chr9 18191321 18191805 -99670822 - LTR40a LTR ERVL 0 519 5 210 319 69 58 chr9 18191858 18192178 -99670449 - L2 LINE L2 -236 3036 2687 2371 88 0 3 chr9 18192306 18192611 -99670016 - AluY SINE Alu -7 304 1 2281 98 7 0 chr9 18192733 18193029 -99669598 - AluSc SINE Alu -11 298 1 441 289 17 17 chr9 18193081 18193254 -99669373 + MER117 DNA MER1_type 7 179 -18 21 0 0 0 chr9 18193865 18193886 -99668741 + AT_rich Low_complexity Low_complexity 1 21 0 4318 175 67 9 chr9 18194349 18195090 -99667537 + L1 LINE L1 2552 3363 -2783 1669 168 83 46 chr9 18195090 18195417 -99667210 - MER44D DNA MER2_type 0 609 1 4318 175 67 9 chr9 18195417 18195640 -99666987 + L1 LINE L1 3363 3572 -2574 1195 44 0 0 chr9 18195640 18195775 -99666852 + AluY SINE Alu 1 135 -176 2328 78 10 0 chr9 18196115 18196409 -99666218 - AluSx SINE Alu -15 297 1 2288 104 10 0 chr9 18196503 18196802 -99665825 - AluY SINE Alu -9 302 1 779 181 15 15 chr9 18197103 18197236 -99665391 - FLAM_A SINE Alu 0 133 1 198 167 0 0 chr9 18197803 18197839 -99664788 + (CA)n Simple_repeat Simple_repeat 1 36 0 768 148 48 91 chr9 18197857 18198066 -99664561 + pTR5 LTR ERV1 742 941 -1497 4877 142 21 63 chr9 18198224 18199082 -99663545 + LTR12 LTR ERV1 5 826 0 2168 84 52 7 chr9 18199252 18199539 -99663088 - AluY SINE Alu -11 300 1 713 204 17 41 chr9 18199681 18199853 -99662774 + MER45A DNA AcHobo 1 168 -10 319 330 28 22 chr9 18200450 18200632 -99661995 + MIR SINE MIR 80 262 0 190 333 0 0 chr9 18200688 18200751 -99661876 + MIR SINE MIR 81 143 -119 2157 113 0 3 chr9 18200827 18201129 -99661498 - AluSq SINE Alu -12 301 1 776 99 0 0 chr9 18201225 18201326 -99661301 - AluY SINE Alu -7 304 204 298 358 25 8 chr9 18201454 18201574 -99661053 - MIR SINE MIR -121 141 20 1991 124 3 17 chr9 18201665 18201963 -99660664 - AluSx SINE Alu -18 294 1 490 169 0 0 chr9 18202354 18202431 -99660196 + FLAM SINE Alu 48 124 -19 2457 65 13 3 chr9 18202815 18203124 -99659503 - AluSx SINE Alu 0 312 1 293 321 74 32 chr9 18203171 18203361 -99659266 - MER20 DNA MER1_type -17 202 5 2409 87 0 0 chr9 18203769 18204078 -99658549 + AluY SINE Alu 1 309 -2 2189 63 35 3 chr9 18204199 18204486 -99658141 + AluY SINE Alu 3 298 -13 24 0 0 0 chr9 18205627 18205651 -99656976 + AT_rich Low_complexity Low_complexity 1 24 0 27 0 0 0 chr9 18205725 18205752 -99656875 + GC_rich Low_complexity Low_complexity 1 27 0 2462 81 0 10 chr9 18207070 18207380 -99655247 + AluY SINE Alu 1 307 -4 539 327 61 70 chr9 18207691 18208147 -99654480 + L2 LINE L2 2845 3296 -17 188 180 0 20 chr9 18208150 18208200 -99654427 + (TATATG)n Simple_repeat Simple_repeat 2 50 0 477 257 68 20 chr9 18209301 18209449 -99653178 + MIR SINE MIR 58 212 -50 411 119 45 0 chr9 18209548 18209636 -99652991 - AluJo SINE Alu 0 314 224 1021 156 0 56 chr9 18209636 18209815 -99652812 - AluJo SINE Alu -142 170 2 650 171 9 0 chr9 18210269 18210374 -99652253 + FLAM_C SINE Alu 2 107 -36 1485 175 103 12 chr9 18210722 18211053 -99651574 + MER46B DNA MER2_type 1 236 0 2399 101 0 0 chr9 18211330 18211636 -99650991 - AluSx SINE Alu -6 306 1 469 286 16 8 chr9 18212414 18212540 -99650087 + MARNA DNA Mariner 92 218 -368 584 214 0 0 chr9 18212567 18212665 -99649962 + AluJ/FLAM SINE Alu 2 99 -213 838 188 0 0 chr9 18212666 18212799 -99649828 + AluJo/FRAM SINE Alu 173 305 -7 244 316 11 21 chr9 18212927 18213022 -99649605 - Charlie7 DNA MER1_type -2517 95 2 734 313 109 25 chr9 18213171 18213722 -99648905 - L2 LINE L2 0 3313 2722 1775 139 45 7 chr9 18213811 18214099 -99648528 + AluJb SINE Alu 1 299 -13 1943 147 0 3 chr9 18214260 18214566 -99648061 + AluSx SINE Alu 1 305 0 2378 55 0 36 chr9 18216216 18216523 -99646104 - AluY SINE Alu -15 296 1 234 0 0 0 chr9 18216953 18216979 -99645648 + (CA)n Simple_repeat Simple_repeat 1 26 0 829 194 0 8 chr9 18217114 18217248 -99645379 - FLAM_A SINE Alu 0 133 1 2142 107 16 13 chr9 18217871 18218181 -99644446 + AluSx SINE Alu 1 311 -1 4341 171 31 38 chr9 18219184 18219238 -99643389 + L1MB2 LINE L1 5114 5167 -1004 2516 64 0 6 chr9 18219238 18219550 -99643077 + AluY SINE Alu 1 310 -1 4341 171 31 38 chr9 18219550 18220514 -99642113 + L1MB2 LINE L1 5167 6124 -47 2076 112 7 10 chr9 18220514 18220809 -99641818 + AluSx SINE Alu 1 294 -18 4341 171 31 38 chr9 18220809 18220854 -99641773 + L1MB2 LINE L1 6124 6168 -3 3186 171 36 85 chr9 18220878 18221436 -99641191 + L1M3 LINE L1 4664 5248 -932 1978 121 28 10 chr9 18221436 18221726 -99640901 + AluSx SINE Alu 1 295 -17 3186 171 36 85 chr9 18221726 18221742 -99640885 + L1M3 LINE L1 5248 5263 -917 1535 186 27 24 chr9 18221742 18221857 -99640770 + AluJo SINE Alu 8 121 -191 189 0 0 0 chr9 18221857 18221878 -99640749 + (TA)n Simple_repeat Simple_repeat 1 21 0 1535 186 27 24 chr9 18221878 18222057 -99640570 + AluJo SINE Alu 121 303 -9 3186 171 36 85 chr9 18222057 18222383 -99640244 + L1M3 LINE L1 5263 5483 -697 2269 87 3 0 chr9 18222383 18222682 -99639945 + AluY SINE Alu 1 300 -11 3186 171 36 85 chr9 18222682 18222989 -99639638 + L1M3 LINE L1 5483 5803 -377 2382 91 0 0 chr9 18223589 18223886 -99638741 - AluSg SINE Alu -13 297 1 2124 107 0 33 chr9 18224076 18224376 -99638251 + AluSx SINE Alu 1 290 -22 198 0 0 0 chr9 18227337 18227359 -99635268 + (A)n Simple_repeat Simple_repeat 1 22 0 27 81 0 0 chr9 18231210 18231272 -99631355 + GC_rich Low_complexity Low_complexity 1 62 0 206 200 83 0 chr9 18231463 18231523 -99631104 + C-rich Low_complexity Low_complexity 3 67 0 23 0 0 0 chr9 18231964 18231987 -99630640 + GC_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr9 18232964 18232984 -99629643 + (GA)n Simple_repeat Simple_repeat 1 20 0 2434 72 10 3 chr9 18233181 18233485 -99629142 + AluSx SINE Alu 1 306 -6 21 0 0 0 chr9 18233783 18233804 -99628823 + AT_rich Low_complexity Low_complexity 1 21 0 632 308 91 19 chr9 18234449 18234890 -99627737 + L2 LINE L2 2761 3239 -74 3127 129 32 66 chr9 18234890 18235268 -99627359 + MER6A DNA MER2_type 3 353 -512 2303 93 3 10 chr9 18235268 18235568 -99627059 + AluSx SINE Alu 1 298 -14 3127 129 32 66 chr9 18235568 18235809 -99626818 + MER6A DNA MER2_type 353 601 -4 632 308 91 19 chr9 18235809 18235889 -99626738 + L2 LINE L2 3239 3312 -1 1324 217 41 4 chr9 18236019 18236286 -99626341 + Charlie1b DNA MER1_type 1 277 -246 2069 116 21 0 chr9 18236292 18236576 -99626051 - AluSx SINE Alu -17 295 6 8312 113 103 77 chr9 18236640 18238293 -99624334 - pTR5 LTR ERV1 0 2438 743 1801 210 113 18 chr9 18238293 18238735 -99623892 - MLT1D LTR MaLR -21 484 1 294 182 140 91 chr9 18238736 18238848 -99623779 + Charlie1b DNA MER1_type 333 455 -2306 2215 105 3 0 chr9 18238848 18239142 -99623485 + AluSp SINE Alu 6 300 -13 294 182 140 91 chr9 18239142 18239172 -99623455 + Charlie1b DNA MER1_type 455 482 -41 2225 106 0 13 chr9 18239186 18239488 -99623139 + AluSx SINE Alu 1 298 -14 1134 282 98 22 chr9 18239549 18239996 -99622631 + MLT1L LTR MaLR 133 613 -2 2207 182 174 16 chr9 18240019 18240564 -99622063 - MER99 DNA DNA -4 824 194 1890 151 0 3 chr9 18240923 18241208 -99621419 - AluSx SINE Alu -28 284 1 279 246 15 0 chr9 18241278 18241343 -99621284 + L2 LINE L2 3207 3272 0 2266 71 13 42 chr9 18241762 18242071 -99620556 - AluY SINE Alu -11 300 1 4320 124 8 58 chr9 18242952 18243676 -99618951 - LTR12 LTR ERV1 0 688 1 2110 129 3 0 chr9 18243726 18244020 -99618607 - AluSp SINE Alu -18 295 1 814 143 21 7 chr9 18244020 18244160 -99618467 - AluJb SINE Alu -8 304 163 1343 142 49 24 chr9 18244209 18244455 -99618172 + AluSx SINE Alu 61 312 0 407 243 12 20 chr9 18244455 18244573 -99618054 - L1MC4 LINE L1 -14 8028 7850 * 755 200 69 6 chr9 18244572 18244747 -99617880 - L1MB7 LINE L1 -41 6143 5958 2262 101 7 3 chr9 18245092 18245390 -99617237 + AluSq SINE Alu 1 299 -14 351 299 103 20 chr9 18245805 18246030 -99616597 + MIR SINE MIR 8 248 -14 266 188 125 104 chr9 18247159 18247303 -99615324 + MER117 DNA MER1_type 2 148 -49 2206 100 3 23 chr9 18248627 18248928 -99613699 - AluSp SINE Alu -18 295 1 665 120 0 0 chr9 18249258 18249350 -99613277 - AluSp/q SINE Alu -16 297 206 2270 106 0 0 chr9 18249676 18249977 -99612650 - AluSg SINE Alu -9 301 1 2203 106 0 13 chr9 18251483 18251784 -99610843 - AluSx SINE Alu -15 297 1 432 191 9 45 chr9 18251819 18251929 -99610698 + MIR SINE MIR 123 228 -34 362 259 29 72 chr9 18252396 18252535 -99610092 - L2 LINE L2 0 3313 3181 232 317 106 0 chr9 18252620 18252743 -99609884 - MIR SINE MIR -93 169 34 218 344 70 25 chr9 18253102 18253259 -99609368 - L2 LINE L2 -198 3074 2911 1173 130 0 0 chr9 18253628 18253790 -99608837 - AluSx SINE Alu -150 162 1 1389 203 174 9 chr9 18253915 18254255 -99608372 - MSTD LTR MaLR 0 396 1 185 348 37 22 chr9 18254290 18254425 -99608202 - L2 LINE L2 -541 2773 2637 772 173 27 79 chr9 18254744 18254809 -99607818 - MLT1A1 LTR MaLR 0 365 298 2241 98 0 20 chr9 18254809 18255115 -99607512 - AluSq SINE Alu -12 301 2 772 173 27 79 chr9 18255115 18255279 -99607348 - MLT1A1 LTR MaLR -67 298 86 1969 148 3 0 chr9 18255279 18255595 -99607032 - AluSx SINE Alu 0 317 1 772 173 27 79 chr9 18255595 18255677 -99606950 - MLT1A1 LTR MaLR -279 86 1 338 178 133 11 chr9 18255692 18255782 -99606845 + L1MC4a LINE L1 5336 5436 -738 1703 159 8 42 chr9 18255788 18255970 -99606657 + L1MB3 LINE L1 5835 6001 -182 2284 79 21 3 chr9 18255970 18256261 -99606366 - AluSp SINE Alu -16 297 2 1703 159 8 42 chr9 18256261 18256431 -99606196 + L1MB3 LINE L1 6001 6175 -8 1441 239 103 7 chr9 18256691 18257147 -99605480 + L1MC4a LINE L1 5479 5978 -1830 1542 180 35 31 chr9 18257219 18257378 -99605249 - AluJo SINE Alu -22 290 128 243 0 0 0 chr9 18257378 18257405 -99605222 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1542 180 35 31 chr9 18257405 18257534 -99605093 - AluJo SINE Alu -184 128 1 2151 108 0 7 chr9 18257568 18257878 -99604749 + AluSp SINE Alu 1 308 0 3390 163 42 3 chr9 18258043 18258663 -99603964 - LTR48B LTR ERV1 0 644 1 904 252 22 36 chr9 18258663 18258941 -99603686 + MLT1H LTR MaLR 37 310 -239 2543 74 0 0 chr9 18258943 18259253 -99603374 + AluSg SINE Alu 1 310 0 2282 105 7 0 chr9 18259374 18259740 -99602887 + AluSg SINE Alu 1 368 0 433 274 135 37 chr9 18260916 18261131 -99601496 - MLT1J2 LTR MaLR -19 431 196 189 0 0 0 chr9 18261382 18261403 -99601224 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 2576 74 0 0 chr9 18261440 18261751 -99600876 + AluY SINE Alu 1 311 0 2224 115 0 0 chr9 18261773 18262061 -99600566 + AluSx SINE Alu 1 288 -24 227 297 20 95 chr9 18262350 18262444 -99600183 - L2 LINE L2 0 3313 3214 2185 31 0 4 chr9 18262444 18262700 -99599927 + L1PA5 LINE L1 5893 6147 -7 297 0 0 0 chr9 18262706 18262739 -99599888 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 227 297 20 95 chr9 18262739 18262785 -99599842 - L2 LINE L2 -104 3209 3177 1947 120 53 0 chr9 18263268 18263551 -99599076 - AluSg SINE Alu -12 298 1 413 149 0 0 chr9 18263581 18263655 -99598972 + AluS SINE Alu 1 74 -227 23 0 0 0 chr9 18263791 18263814 -99598813 + AT_rich Low_complexity Low_complexity 1 23 0 184 287 194 8 chr9 18264191 18264320 -99598307 - MIR3 SINE MIR -23 185 33 686 263 114 73 chr9 18264485 18264983 -99597644 - MLT1L LTR MaLR -93 495 6 2121 85 3 65 chr9 18265037 18265344 -99597283 + AluSp SINE Alu 1 288 -25 3938 188 23 55 chr9 18266767 18266833 -99595794 + L1MB7 LINE L1 4596 4663 -1521 960 153 6 12 chr9 18266833 18266996 -99595631 + FRAM SINE Alu 1 162 -4 3938 188 23 55 chr9 18266996 18267679 -99594948 + L1MB7 LINE L1 4663 5367 -817 2207 107 0 3 chr9 18267679 18267977 -99594650 + AluSq SINE Alu 1 297 -16 3938 188 23 55 chr9 18267977 18268350 -99594277 + L1MB7 LINE L1 5367 5751 -433 637 221 0 8 chr9 18268350 18268472 -99594155 + FLAM_A SINE Alu 1 121 -12 3938 188 23 55 chr9 18268472 18268987 -99593640 + L1MB7 LINE L1 5751 6184 0 22 0 0 0 chr9 18269374 18269396 -99593231 + AT_rich Low_complexity Low_complexity 1 22 0 482 281 166 5 chr9 18270606 18270823 -99591804 - MIR SINE MIR -9 253 2 383 204 9 56 chr9 18270837 18270945 -99591682 - L1ME LINE L1 -302 5819 5717 3149 208 135 14 chr9 18270982 18271220 -99591407 - L1ME LINE L1 -756 5390 5182 2179 123 3 0 chr9 18271220 18271528 -99591099 - AluSc SINE Alu 0 309 1 3149 208 135 14 chr9 18271528 18272197 -99590430 - L1ME LINE L1 -964 5182 4404 288 214 165 29 chr9 18272818 18272921 -99589706 - MLT1J LTR MaLR -275 212 59 562 199 144 11 chr9 18273028 18273184 -99589443 - MER5A DNA MER1_type -6 183 4 2513 70 0 6 chr9 18273621 18273934 -99588693 + AluY SINE Alu 1 311 0 1928 114 4 4 chr9 18274095 18274367 -99588260 + AluSc SINE Alu 37 308 -1 1420 174 56 10 chr9 18274409 18274697 -99587930 + L1MB1 LINE L1 4817 5117 -1029 3931 159 16 39 chr9 18274698 18274756 -99587871 + L1MB1 LINE L1 5443 5501 -667 1822 170 0 19 chr9 18274756 18275068 -99587559 + AluJo SINE Alu 1 306 -6 3931 159 16 39 chr9 18275068 18275367 -99587260 + L1MB1 LINE L1 5501 5805 -363 2625 52 0 3 chr9 18275367 18275674 -99586953 + AluY SINE Alu 1 306 -5 3931 159 16 39 chr9 18275674 18275727 -99586900 + L1MB1 LINE L1 5805 5858 -310 2004 125 3 10 chr9 18275727 18276030 -99586597 + AluSx SINE Alu 1 301 -11 3931 159 16 39 chr9 18276030 18276359 -99586268 + L1MB1 LINE L1 5858 6167 -1 2270 91 50 0 chr9 18276395 18276692 -99585935 + AluSx SINE Alu 1 312 0 213 0 36 0 chr9 18277114 18277142 -99585485 + (TTTG)n Simple_repeat Simple_repeat 4 68 0 2284 70 0 3 chr9 18277142 18277427 -99585200 - AluY SINE Alu -1 311 1 6635 83 7 0 chr9 18278324 18279205 -99583422 + L1PA13 LINE L1 5277 6163 0 2369 87 7 0 chr9 18279207 18279516 -99583111 + AluY SINE Alu 1 311 0 579 100 0 20 chr9 18279517 18279617 -99583010 + (GGAA)n Simple_repeat Simple_repeat 2 99 0 7573 152 35 11 chr9 18279627 18280975 -99581652 - L1 LINE L1 -1183 4963 3649 983 84 36 6 chr9 18280975 18281142 -99581485 + CT-rich Low_complexity Low_complexity 1 172 0 2007 133 3 3 chr9 18281145 18281445 -99581182 - AluSq SINE Alu -9 304 5 7573 152 35 11 chr9 18281445 18281472 -99581155 - L1 LINE L1 -2498 3648 3623 2568 52 10 0 chr9 18281472 18281780 -99580847 - AluY SINE Alu 0 311 1 271 63 0 175 chr9 18281922 18281958 -99580669 + MER53 DNA DNA 1 23 -166 1964 161 39 6 chr9 18281958 18282293 -99580334 + L1MC1 LINE L1 5988 6333 0 271 63 0 175 chr9 18282293 18282319 -99580308 + MER53 DNA DNA 23 52 -137 1331 171 105 8 chr9 18282369 18282626 -99580001 - AluJb SINE Alu -30 282 1 640 148 109 0 chr9 18282628 18282756 -99579871 + MER53 DNA DNA 45 186 -3 187 254 146 0 chr9 18282864 18282919 -99579708 + L2 LINE L2 3251 3313 0 2172 100 3 3 chr9 18283189 18283478 -99579149 + AluSx SINE Alu 1 289 -23 431 45 120 0 chr9 18283478 18283611 -99579016 + (TA)n Simple_repeat Simple_repeat 2 150 0 370 163 76 54 chr9 18283719 18283811 -99578816 - MER93b LTR ERV1 -279 94 1 2785 89 19 8 chr9 18283935 18284295 -99578332 + THE1B LTR MaLR 1 364 0 202 274 0 0 chr9 18284404 18284455 -99578172 - L2 LINE L2 -304 2968 2918 208 254 0 18 chr9 18284632 18284687 -99577940 + (CATA)n Simple_repeat Simple_repeat 3 56 0 22 0 0 0 chr9 18285672 18285694 -99576933 + AT_rich Low_complexity Low_complexity 1 22 0 288 111 0 0 chr9 18286264 18286309 -99576318 + (CA)n Simple_repeat Simple_repeat 2 46 0 2441 64 0 0 chr9 18286940 18287236 -99575391 - AluY SINE Alu -15 296 1 2146 95 0 16 chr9 18287262 18287568 -99575059 - AluY SINE Alu -10 301 1 2278 112 3 0 chr9 18287573 18287885 -99574742 - AluSp SINE Alu 0 313 1 25 31 0 0 chr9 18287895 18287927 -99574700 + AT_rich Low_complexity Low_complexity 1 32 0 2027 91 31 18 chr9 18287927 18288213 -99574414 - AluSx SINE Alu -7 305 16 709 168 9 0 chr9 18288216 18288323 -99574304 - FLAM_A SINE Alu -23 119 12 2411 60 17 0 chr9 18288647 18288945 -99573682 - AluY SINE Alu -8 303 1 2265 64 54 10 chr9 18290121 18290419 -99572208 - AluY SINE Alu 0 311 1 2093 130 3 0 chr9 18290696 18290997 -99571630 + AluSc SINE Alu 1 302 -7 2141 121 10 0 chr9 18291215 18291513 -99571114 + AluSq SINE Alu 1 301 -12 2782 92 3 24 chr9 18291543 18291914 -99570713 + THE1B LTR MaLR 2 364 0 965 206 22 5 chr9 18292503 18292687 -99569940 + MER5A DNA MER1_type 1 187 -2 672 130 22 0 chr9 18292912 18293004 -99569623 + AluJ/FLAM SINE Alu 2 95 -217 1138 131 51 70 chr9 18293113 18293327 -99569300 + AluSg/x SINE Alu 100 309 -3 2565 118 22 0 chr9 18294142 18294498 -99568129 - THE1B LTR MaLR 0 364 1 2334 89 0 0 chr9 18294570 18294874 -99567753 - AluY SINE Alu -7 304 1 207 297 40 0 chr9 18295094 18295168 -99567459 + MIR SINE MIR 81 157 -105 221 305 76 66 chr9 18295202 18295399 -99567228 - MIR SINE MIR -21 241 43 346 307 44 9 chr9 18296292 18296406 -99566221 - L2 LINE L2 0 3272 3155 1050 129 12 6 chr9 18296999 18297162 -99565465 + AluSc SINE Alu 136 299 -10 2308 155 28 0 chr9 18297187 18297541 -99565086 + THE1B LTR MaLR 1 364 0 2139 95 37 10 chr9 18297916 18298210 -99564417 + AluY SINE Alu 2 303 -8 2085 106 3 3 chr9 18298416 18298728 -99563899 + AluSx SINE Alu 1 312 0 749 127 9 9 chr9 18298932 18299042 -99563585 - AluSg/x SINE Alu -9 301 192 1379 176 3 107 chr9 18299223 18299449 -99563178 + L1M4 LINE L1 4520 4768 -1378 264 30 0 0 chr9 18299449 18299482 -99563145 + (TTAA)n Simple_repeat Simple_repeat 1 33 0 1792 130 7 47 chr9 18299491 18299790 -99562837 - AluSq SINE Alu -26 287 1 1379 176 3 107 chr9 18299790 18299917 -99562710 + L1M4 LINE L1 4776 4845 -1301 3656 155 85 79 chr9 18299997 18300817 -99561810 + MER21B LTR ERV1 13 837 -26 2966 228 39 34 chr9 18300818 18301074 -99561553 - L1M4 LINE L1 -386 5735 5482 2060 116 24 0 chr9 18301074 18301366 -99561261 - AluSq SINE Alu -14 299 1 2966 228 39 34 chr9 18301366 18302027 -99560600 - L1M4 LINE L1 -639 5482 3527 2254 87 3 50 chr9 18302185 18302508 -99560119 + AluY SINE Alu 1 308 -3 2087 150 3 10 chr9 18302682 18302995 -99559632 - AluSx SINE Alu -1 311 1 2189 104 0 13 chr9 18303032 18303331 -99559296 - AluSc SINE Alu -14 295 1 203 156 0 0 chr9 18304374 18304406 -99558221 + (TG)n Simple_repeat Simple_repeat 1 32 0 23 0 0 0 chr9 18304501 18304524 -99558103 + AT_rich Low_complexity Low_complexity 1 23 0 2349 60 0 0 chr9 18305161 18305488 -99557139 - AluY SINE Alu 0 327 1 2228 215 30 57 chr9 18306460 18307263 -99555364 - Zaphod DNA AcHobo -1 825 118 218 250 45 0 chr9 18307269 18307313 -99555314 + L2 LINE L2 3240 3285 -28 2006 150 10 0 chr9 18307532 18307832 -99554795 - AluJo SINE Alu -4 308 6 215 329 14 0 chr9 18308588 18308661 -99553966 + MIR SINE MIR 30 103 -105 737 276 106 37 chr9 18309243 18309649 -99552978 + MLT1K LTR MaLR 147 580 -8 2278 97 0 0 chr9 18310476 18310766 -99551861 + AluSc SINE Alu 1 290 -19 312 311 51 137 chr9 18310939 18311184 -99551443 + L2 LINE L2 2825 3011 -261 1867 168 7 0 chr9 18311184 18311494 -99551133 - AluJo SINE Alu 0 312 1 312 311 51 137 chr9 18311494 18311721 -99550906 + L2 LINE L2 3011 3256 -16 188 348 82 39 chr9 18311816 18312049 -99550578 + L2 LINE L2 2816 3058 -214 2597 58 0 0 chr9 18312348 18312657 -99549970 - AluY SINE Alu -2 309 1 6526 82 10 0 chr9 18312659 18313537 -99549090 - L1PA13 LINE L1 0 6163 5277 2258 112 0 0 chr9 18313943 18314239 -99548388 + AluSx SINE Alu 1 296 -16 2181 93 45 0 chr9 18314244 18314533 -99548094 + AluSx SINE Alu 1 302 -10 2029 125 81 36 chr9 18317623 18317982 -99544645 - THE1C LTR MaLR 0 375 1 1395 304 85 24 chr9 18318126 18318630 -99543997 + MLT1K LTR MaLR 13 547 -41 768 287 69 3 chr9 18318903 18319206 -99543421 - L1MB8 LINE L1 -244 5877 5555 1227 204 37 20 chr9 18319223 18319517 -99543110 + L1MB8 LINE L1 5879 6177 -1 195 129 0 0 chr9 18319836 18319867 -99542760 + (T)n Simple_repeat Simple_repeat 1 31 0 437 278 60 0 chr9 18321044 18321177 -99541450 + MIR SINE MIR 103 243 -19 2283 103 0 25 chr9 18321668 18321988 -99540639 + AluSx SINE Alu 1 312 0 2038 138 20 0 chr9 18322025 18322330 -99540297 + AluSx SINE Alu 1 311 -1 257 49 73 0 chr9 18322338 18322379 -99540248 + A-rich Low_complexity Low_complexity 2 45 0 254 356 25 6 chr9 18323123 18323283 -99539344 + LTR16C LTR ERVL 329 491 0 386 305 83 85 chr9 18323420 18323843 -99538784 + L2 LINE L2 2250 2671 -643 3991 210 44 43 chr9 18324472 18325646 -99536981 + L1MA9 LINE L1 5118 6274 -38 217 283 38 0 chr9 18325683 18325736 -99536891 + MIR SINE MIR 56 110 -98 1995 253 43 15 chr9 18326185 18326723 -99535904 - HsTC2 DNA Tc2 -65 1833 1281 319 274 126 37 chr9 18326720 18326855 -99535772 - HsTC2 DNA Tc2 -1750 148 2 * 207 203 73 112 chr9 18326890 18326923 -99535704 - MIR SINE MIR -77 131 98 1856 139 0 21 chr9 18326923 18327211 -99535416 + AluJo SINE Alu 1 282 -30 224 0 65 0 chr9 18327214 18327245 -99535382 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 207 203 73 112 chr9 18327245 18327361 -99535266 - MIR SINE MIR -112 96 1 192 77 0 0 chr9 18327996 18328022 -99534605 + (TA)n Simple_repeat Simple_repeat 1 26 0 2496 80 0 0 chr9 18330434 18330735 -99531892 + AluSc SINE Alu 1 301 -8 313 291 29 62 chr9 18331261 18331471 -99531156 + L1ME LINE L1 4862 5064 -1082 324 316 44 44 chr9 18331548 18331773 -99530854 + L1ME LINE L1 5175 5399 -747 1495 277 74 5 chr9 18331785 18332215 -99530412 + LTR16B LTR ERVL 3 462 -2 291 231 51 51 chr9 18332272 18332389 -99530238 + L1ME LINE L1 5545 5661 -509 2425 68 0 0 chr9 18332395 18332689 -99529938 + AluY SINE Alu 1 294 -17 1175 149 54 18 chr9 18332690 18332911 -99529716 + L1MD2 LINE L1 6121 6349 -10 680 256 93 83 chr9 18332921 18333783 -99528844 + L1ME1 LINE L1 5162 6020 -101 1523 99 5 22 chr9 18336049 18336271 -99526356 - AluSx SINE Alu -94 218 1 591 354 8 16 chr9 18336452 18336695 -99525932 + MIR SINE MIR 1 241 -21 2274 108 0 3 chr9 18337246 18337553 -99525074 + AluSx SINE Alu 1 306 -6 206 287 139 9 chr9 18337701 18337816 -99524811 - MIR SINE MIR -55 207 78 3922 109 10 2 chr9 18337849 18338434 -99524193 + L1P LINE L1 4659 5248 -898 22 0 0 0 chr9 18338608 18338630 -99523997 + AT_rich Low_complexity Low_complexity 1 22 0 2176 98 17 7 chr9 18338739 18339035 -99523592 + AluSg SINE Alu 1 299 -11 21 0 0 0 chr9 18339169 18339190 -99523437 + AT_rich Low_complexity Low_complexity 1 21 0 493 298 67 6 chr9 18339713 18339891 -99522736 - MIR SINE MIR -59 203 15 2099 128 0 0 chr9 18340080 18340377 -99522250 + AluSx SINE Alu 1 297 -15 1773 152 0 17 chr9 18340389 18340691 -99521936 + 7SLRNA srpRNA srpRNA 1 297 -23 34 45 0 15 chr9 18340696 18340730 -99521897 + AT_rich Low_complexity Low_complexity 1 35 -30 1803 188 0 7 chr9 18340730 18341038 -99521589 - AluJo SINE Alu -6 306 1 34 45 0 15 chr9 18341038 18341069 -99521558 + AT_rich Low_complexity Low_complexity 35 65 0 2235 113 0 3 chr9 18341340 18341650 -99520977 - AluSc SINE Alu 0 309 1 6662 89 43 0 chr9 18341659 18342658 -99519969 - L1PA8A LINE L1 -3 6128 5116 370 182 25 25 chr9 18342828 18342949 -99519678 + T-rich Low_complexity Low_complexity 2 122 0 341 238 176 11 chr9 18343267 18343578 -99519049 + MLT1J LTR MaLR 118 448 -2 22 0 0 0 chr9 18344000 18344022 -99518605 + AT_rich Low_complexity Low_complexity 1 22 0 1776 125 50 11 chr9 18344024 18344303 -99518324 - AluSx SINE Alu -11 301 12 2163 107 3 7 chr9 18344533 18344831 -99517796 + AluSq SINE Alu 1 297 -16 1559 200 23 0 chr9 18345768 18346068 -99516559 + AluJo SINE Alu 1 307 -5 355 293 53 30 chr9 18346076 18346209 -99516418 - MIR SINE MIR -50 212 77 2387 98 15 70 chr9 18346286 18346343 -99516284 + THE1C LTR MaLR 1 60 -315 2806 96 6 0 chr9 18346343 18346696 -99515931 + THE1A LTR MaLR 1 355 0 2387 98 15 70 chr9 18346696 18346809 -99515818 + THE1C LTR MaLR 60 178 -197 2239 103 3 16 chr9 18346809 18347119 -99515508 - AluSg SINE Alu -4 306 1 2387 98 15 70 chr9 18347119 18347344 -99515283 + THE1C LTR MaLR 178 375 0 263 159 48 32 chr9 18347451 18347514 -99515113 - MLT1J LTR MaLR -2 509 446 288 348 119 17 chr9 18347873 18347991 -99514636 + MER91A DNA MER1_type 33 162 -34 217 289 12 60 chr9 18348135 18348218 -99514409 - MIR SINE MIR -119 143 65 376 293 62 51 chr9 18349298 18349554 -99513073 + L1MC/D LINE L1 5016 5274 -872 592 328 69 17 chr9 18349562 18349645 -99512982 + L1MC/D LINE L1 5296 5373 -836 432 0 0 0 chr9 18349645 18349693 -99512934 + (CA)n Simple_repeat Simple_repeat 1 48 0 592 328 69 17 chr9 18349693 18349704 -99512923 + L1MC/D LINE L1 5373 5382 -827 1810 139 35 3 chr9 18349704 18349991 -99512636 + AluSx SINE Alu 1 296 -16 592 328 69 17 chr9 18349991 18350319 -99512308 + L1MC/D LINE L1 5382 5736 -473 2449 88 0 0 chr9 18350328 18350633 -99511994 - AluSc SINE Alu -4 305 1 26 0 0 0 chr9 18351102 18351128 -99511499 + AT_rich Low_complexity Low_complexity 1 26 0 9395 27 3 232 chr9 18351128 18352917 -99509710 - SVA Other Other -1 1385 7 237 108 0 0 chr9 18353165 18353202 -99509425 + (T)n Simple_repeat Simple_repeat 1 37 0 2206 121 0 3 chr9 18353226 18353531 -99509096 + AluSx SINE Alu 1 304 -8 36 23 0 0 chr9 18353685 18353728 -99508899 + AT_rich Low_complexity Low_complexity 1 43 0 2068 118 27 3 chr9 18354206 18354502 -99508125 + AluSx SINE Alu 1 303 -9 723 203 0 16 chr9 18354662 18354790 -99507837 + FLAM_C SINE Alu 2 127 -6 320 220 312 9 chr9 18355173 18355282 -99507345 - MIR SINE MIR 0 262 121 769 254 228 27 chr9 18355334 18355668 -99506959 + L2 LINE L2 2485 2885 -429 629 184 34 61 chr9 18355779 18355926 -99506701 + L2 LINE L2 3171 3313 0 204 359 0 16 chr9 18355939 18356003 -99506624 + MIR SINE MIR 25 87 -175 2179 121 3 3 chr9 18356028 18356334 -99506293 + AluSx SINE Alu 1 306 -6 212 306 204 0 chr9 18356557 18356655 -99505972 - L2 LINE L2 -6 3307 3190 33 66 0 0 chr9 18356763 18356824 -99505803 + AT_rich Low_complexity Low_complexity 1 61 0 2122 108 64 28 chr9 18358189 18358549 -99504078 + THE1C LTR MaLR 1 373 -2 2498 81 0 0 chr9 18359891 18360198 -99502429 - AluY SINE Alu -4 307 1 180 0 0 0 chr9 18360202 18360222 -99502405 + (T)n Simple_repeat Simple_repeat 1 20 0 261 128 0 0 chr9 18361602 18361649 -99500978 + (TG)n Simple_repeat Simple_repeat 2 48 0 530 251 142 6 chr9 18362955 18363138 -99499489 - LTR33 LTR ERVL 0 521 314 689 246 97 5 chr9 18363208 18363403 -99499224 - LTR33 LTR ERVL -306 215 3 227 269 90 0 chr9 18363410 18363488 -99499139 + MIR SINE MIR 46 130 -132 2098 206 78 49 chr9 18363713 18363926 -99498701 - L1ME1 LINE L1 -5 6161 5956 3100 86 54 19 chr9 18363926 18364355 -99498272 - MLT2A1 LTR ERVL 0 444 1 2098 206 78 49 chr9 18364355 18364771 -99497856 - L1ME1 LINE L1 -210 5956 5514 3460 126 67 7 chr9 18364779 18365333 -99497294 + L1MB2 LINE L1 5583 6169 -2 201 307 95 29 chr9 18365842 18366020 -99496607 + L2 LINE L2 258 3042 -230 693 147 10 0 chr9 18366181 18366283 -99496344 - FLAM_A SINE Alu -9 133 31 193 273 225 29 chr9 18367185 18367274 -99495353 - MIR SINE MIR -7 255 185 2037 106 39 0 chr9 18367274 18367556 -99495071 - AluSx SINE Alu -19 293 1 193 273 225 29 chr9 18367556 18367675 -99494952 - MIR SINE MIR -77 185 6 369 254 152 6 chr9 18368109 18368274 -99494353 - HAL1b LINE L1 -254 1094 906 323 295 62 70 chr9 18368430 18368488 -99494139 - HAL1 LINE L1 -1182 1325 1268 2106 109 33 0 chr9 18368488 18368790 -99493837 - AluSx SINE Alu 0 312 1 323 295 62 70 chr9 18368790 18368958 -99493669 - HAL1 LINE L1 -1239 1268 1101 257 236 56 45 chr9 18368973 18369062 -99493565 - HAL1 LINE L1 -1601 906 817 2221 120 3 0 chr9 18370046 18370346 -99492281 + AluSq SINE Alu 1 301 -12 7315 95 22 4 chr9 18370359 18371427 -99491200 + L1MA1 LINE L1 5212 6298 -4 357 283 9 9 chr9 18371470 18371576 -99491051 - MIR SINE MIR -2 260 155 481 180 27 18 chr9 18371581 18371692 -99490935 - LTR26 LTR ERV1 0 603 492 806 209 6 211 chr9 18371701 18372138 -99490489 - LTR8 LTR ERV1 -362 365 1 449 333 20 0 chr9 18372139 18372286 -99490341 - MIR SINE MIR -111 151 2 327 308 144 19 chr9 18372518 18372726 -99489901 - MIR SINE MIR 0 262 29 1713 251 98 26 chr9 18372726 18373216 -99489411 + MLT1E3 LTR MaLR 1 454 -170 195 42 0 0 chr9 18373216 18373240 -99489387 + (ATTG)n Simple_repeat Simple_repeat 2 25 0 1391 180 10 69 chr9 18373240 18373417 -99489210 - AluJo SINE Alu -25 287 134 2151 125 7 0 chr9 18373417 18373706 -99488921 + AluSc SINE Alu 3 293 -16 1391 180 10 69 chr9 18373706 18373833 -99488794 - AluJo SINE Alu -178 134 1 1713 251 98 26 chr9 18373833 18373923 -99488704 + MLT1E3 LTR MaLR 453 624 0 315 339 0 47 chr9 18374104 18374231 -99488396 + L2 LINE L2 2959 3079 -193 342 0 0 0 chr9 18374613 18374651 -99487976 + (CA)n Simple_repeat Simple_repeat 2 39 0 24 53 0 0 chr9 18375622 18375660 -99486967 + AT_rich Low_complexity Low_complexity 1 38 0 235 265 49 117 chr9 18376066 18376228 -99486399 - MLT1K LTR MaLR -44 544 394 207 176 0 0 chr9 18376937 18376971 -99485656 + (TG)n Simple_repeat Simple_repeat 2 35 0 2476 77 0 0 chr9 18377521 18377832 -99484795 + AluY SINE Alu 1 311 0 1251 129 0 16 chr9 18377915 18378101 -99484526 + AluSg/x SINE Alu 106 288 -24 414 238 23 21 chr9 18379184 18379297 -99483330 + MIR SINE MIR 23 113 -95 381 331 64 17 chr9 18380765 18380937 -99481690 - L2 LINE L2 0 3313 3134 1266 282 93 9 chr9 18381557 18382021 -99480606 + HERV16 LTR ERVL 816 1318 -3678 518 283 28 67 chr9 18382311 18382594 -99480033 + HERV16 LTR ERVL 3241 3512 -1484 21 0 0 0 chr9 18383300 18383321 -99479306 + AT_rich Low_complexity Low_complexity 1 21 0 1405 188 66 57 chr9 18384170 18384612 -99478015 - Charlie4a DNA MER1_type -31 477 32 397 247 242 16 chr9 18384636 18384822 -99477805 - MIR SINE MIR -8 254 27 317 219 65 49 chr9 18386616 18386803 -99475824 - Tigger1 DNA MER2_type -797 800 675 399 277 38 19 chr9 18386960 18387119 -99475508 - MARNA DNA Mariner -27 559 398 876 240 59 18 chr9 18388016 18388237 -99474390 + MIR SINE MIR 12 241 -21 1741 191 171 7 chr9 18388373 18388813 -99473814 + MLT2B1 LTR ERVL 1 512 -8 438 297 20 27 chr9 18389407 18389586 -99473041 + MIR SINE MIR 31 206 -56 1339 177 23 16 chr9 18391185 18391483 -99471144 - MER61B LTR ERV1 -29 396 3 22 0 0 0 chr9 18392202 18392224 -99470403 + AT_rich Low_complexity Low_complexity 1 22 0 510 299 25 6 chr9 18394030 18394187 -99468440 + L2 LINE L2 2593 2752 -562 296 296 20 0 chr9 18394272 18394370 -99468257 - MER103 DNA DNA -7 159 60 1085 238 5 0 chr9 18394824 18395047 -99467580 - MER58A DNA MER1_type 0 224 1 23 0 0 0 chr9 18395217 18395240 -99467387 + AT_rich Low_complexity Low_complexity 1 23 0 1869 157 14 10 chr9 18395240 18395534 -99467093 - AluJb SINE Alu -17 295 1 777 283 94 17 chr9 18396311 18396661 -99465966 + MLT1J1 LTR MaLR 70 446 0 28 0 0 0 chr9 18397189 18397217 -99465410 + AT_rich Low_complexity Low_complexity 1 28 0 1696 86 0 5 chr9 18397642 18397862 -99464765 - AluSq SINE Alu -6 307 89 2217 228 96 27 chr9 18398371 18398454 -99464173 + L1ME3A LINE L1 5244 5320 -850 2393 95 0 13 chr9 18398454 18398769 -99463858 + AluY SINE Alu 1 311 0 2217 228 96 27 chr9 18398769 18398790 -99463837 + L1ME3A LINE L1 5320 5338 -832 1503 104 3 190 chr9 18398790 18399154 -99463473 + AluJb SINE Alu 1 296 -6 2217 228 96 27 chr9 18399154 18399889 -99462738 + L1ME3A LINE L1 5338 6142 -28 748 326 13 0 chr9 18399906 18400145 -99462482 + MIR SINE MIR 20 261 -1 23 78 0 0 chr9 18400565 18400616 -99462011 + AT_rich Low_complexity Low_complexity 1 51 0 415 301 9 0 chr9 18401051 18401164 -99461463 + L2 LINE L2 3200 3313 0 22 56 0 0 chr9 18401216 18401252 -99461375 + AT_rich Low_complexity Low_complexity 1 36 0 505 278 64 0 chr9 18402001 18402188 -99460439 - L1MB2 LINE L1 -3 6168 5970 2560 71 0 3 chr9 18402251 18402561 -99460066 - AluSq SINE Alu -4 309 1 260 309 50 53 chr9 18402772 18403192 -99459435 - L1MC4a LINE L1 -237 5884 5520 1114 182 0 0 chr9 18403222 18403403 -99459224 + AluJb SINE Alu 129 309 -3 380 264 130 34 chr9 18403667 18403906 -99458721 - L1ME3A LINE L1 -219 5951 5690 3852 222 59 112 chr9 18403945 18405932 -99456695 - Charlie1 DNA MER1_type 0 2761 908 2220 66 0 17 chr9 18405932 18406245 -99456382 + AluY SINE Alu 1 308 0 3852 222 59 112 chr9 18406245 18406548 -99456079 - Charlie1 DNA MER1_type -1853 908 591 4064 172 36 8 chr9 18406555 18407376 -99455251 - L1MB3 LINE L1 -12 6171 5328 1518 238 31 46 chr9 18407492 18408031 -99454596 - Charlie1 DNA MER1_type -2228 533 3 2263 87 0 13 chr9 18408032 18408330 -99454297 - AluY SINE Alu -17 294 1 339 349 0 8 chr9 18408336 18408468 -99454159 - L1ME3A LINE L1 -501 5661 5531 1334 272 74 5 chr9 18408511 18408941 -99453686 - LTR16B LTR ERVL -2 462 3 337 316 44 44 chr9 18408953 18409178 -99453449 - L1ME3A LINE L1 -747 5399 5175 242 291 29 62 chr9 18409255 18409465 -99453162 - L1ME3A LINE L1 -1082 5064 4862 2495 80 0 0 chr9 18409991 18410292 -99452335 - AluSc SINE Alu -8 301 1 192 77 0 0 chr9 18412704 18412730 -99449897 + (TA)n Simple_repeat Simple_repeat 1 26 0 208 203 73 112 chr9 18413365 18413481 -99449146 + MIR SINE MIR 1 120 -110 224 0 65 0 chr9 18413481 18413512 -99449115 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 1863 139 0 21 chr9 18413515 18413803 -99448824 - AluJo SINE Alu -30 282 1 208 203 73 112 chr9 18413803 18413836 -99448791 + MIR SINE MIR 122 153 -77 279 255 10 49 chr9 18413871 18413973 -99448654 + HsTC2 DNA Tc2 2 99 -1799 1762 253 43 15 chr9 18414003 18414541 -99448086 + HsTC2 DNA Tc2 1281 1833 -65 219 283 38 0 chr9 18414990 18415043 -99447584 - MIR SINE MIR -98 110 56 3573 206 44 41 chr9 18415080 18416219 -99446408 - L1MA9 LINE L1 -38 6274 5150 420 307 80 85 chr9 18416881 18417305 -99445322 - L2 LINE L2 -643 2671 2250 257 49 73 0 chr9 18418345 18418386 -99444241 + T-rich Low_complexity Low_complexity 2 45 0 2050 138 20 0 chr9 18418394 18418699 -99443928 - AluSx SINE Alu -1 311 1 2291 103 0 25 chr9 18418736 18419056 -99443571 - AluSx SINE Alu 0 312 1 440 278 60 0 chr9 18419547 18419680 -99442947 - MIR SINE MIR -19 243 103 188 65 0 32 chr9 18420857 18420888 -99441739 + (GAAAA)n Simple_repeat Simple_repeat 2 31 0 1097 204 37 20 chr9 18421206 18421500 -99441127 - L1MB8 LINE L1 -1 6177 5879 641 287 69 3 chr9 18421517 18421820 -99440807 + L1MB8 LINE L1 5555 5877 -244 1239 304 85 24 chr9 18422093 18422597 -99440030 - MLT1K LTR MaLR -41 547 13 1863 125 81 36 chr9 18422741 18423100 -99439527 + THE1C LTR MaLR 1 375 0 2172 94 45 0 chr9 18426190 18426478 -99436149 - AluSx SINE Alu -11 301 1 2265 112 0 0 chr9 18426483 18426779 -99435848 - AluSx SINE Alu -16 296 1 22 0 0 0 chr9 18427031 18427053 -99435574 + AT_rich Low_complexity Low_complexity 1 22 0 2174 98 17 7 chr9 18427162 18427458 -99435169 + AluSg SINE Alu 1 299 -11 21 0 0 0 chr9 18427592 18427613 -99435014 + AT_rich Low_complexity Low_complexity 1 21 0 508 298 67 6 chr9 18428136 18428314 -99434313 - MIR SINE MIR -59 203 15 2095 128 0 0 chr9 18428503 18428800 -99433827 + AluSx SINE Alu 1 297 -15 1777 156 0 17 chr9 18428812 18429114 -99433513 + 7SLRNA srpRNA srpRNA 1 297 -23 34 45 0 15 chr9 18429119 18429153 -99433474 + AT_rich Low_complexity Low_complexity 1 35 -30 1833 188 0 7 chr9 18429153 18429461 -99433166 - AluJo SINE Alu -6 306 1 34 45 0 15 chr9 18429461 18429492 -99433135 + AT_rich Low_complexity Low_complexity 35 65 0 2237 113 0 3 chr9 18429763 18430073 -99432554 - AluSc SINE Alu 0 309 1 6202 89 14 1 chr9 18430082 18431541 -99431086 - L1PA8A LINE L1 -3 6128 4659 216 287 139 9 chr9 18431574 18431689 -99430938 + MIR SINE MIR 78 207 -55 2296 104 0 3 chr9 18431837 18432144 -99430483 - AluSx SINE Alu -6 306 1 597 354 8 16 chr9 18432695 18432938 -99429689 - MIR SINE MIR -21 241 1 2310 92 3 13 chr9 18433119 18433433 -99429194 + AluSx SINE Alu 1 311 -1 189 0 0 0 chr9 18433695 18433716 -99428911 + (TA)n Simple_repeat Simple_repeat 2 22 0 2536 45 3 6 chr9 18433718 18434030 -99428597 - AluY SINE Alu 0 311 1 709 142 0 0 chr9 18435069 18435175 -99427452 + AluSg/x SINE Alu 188 293 -19 1426 262 146 21 chr9 18436174 18436839 -99425788 - L1ME3A LINE L1 -6 6164 5417 23 33 0 0 chr9 18440382 18440412 -99422215 + AT_rich Low_complexity Low_complexity 1 30 0 2064 123 7 3 chr9 18441146 18441455 -99421172 - AluSx SINE Alu -2 310 1 274 389 43 0 chr9 18441694 18441833 -99420794 - L2 LINE L2 -2 3270 3126 2368 92 10 0 chr9 18441907 18442211 -99420416 + AluSp SINE Alu 1 307 -6 611 121 0 107 chr9 18442784 18442924 -99419703 + MER112 DNA MER1_type 129 253 -7 1758 188 13 10 chr9 18443148 18443446 -99419181 - AluJb SINE Alu -12 300 2 2250 81 10 3 chr9 18444218 18444513 -99418114 + AluSq SINE Alu 1 297 -16 22 56 0 0 chr9 18444691 18444727 -99417900 + AT_rich Low_complexity Low_complexity 1 36 0 861 262 97 37 chr9 18445365 18445900 -99416727 - L1ME4a LINE L1 -3 6118 5552 340 329 144 0 chr9 18446458 18446604 -99416023 + MIR SINE MIR 31 197 -65 2636 63 0 0 chr9 18446699 18447031 -99415596 + L1PA7 LINE L1 5818 6149 -5 6113 129 29 94 chr9 18447315 18448684 -99413943 + pTR5 LTR ERV1 742 2021 -417 254 248 30 20 chr9 18448685 18448786 -99413841 + LTR30 LTR ERV1 541 642 -80 1112 101 34 6 chr9 18448787 18448965 -99413662 + LTR12 LTR ERV1 480 662 -52 309 205 193 4 chr9 18448965 18449071 -99413556 + MIR SINE MIR 33 156 -59 613 275 21 21 chr9 18449072 18449134 -99413493 - MIR SINE MIR -1 261 200 2123 136 0 7 chr9 18449134 18449436 -99413191 - AluSx SINE Alu -12 300 1 613 275 21 21 chr9 18449436 18449562 -99413065 - MIR SINE MIR -61 201 73 1979 148 10 0 chr9 18449845 18450149 -99412478 + AluSq SINE Alu 1 307 -6 265 111 0 22 chr9 18450198 18450243 -99412384 - MLT2B1 LTR ERVL 0 464 421 252 0 0 0 chr9 18450249 18450277 -99412350 + (TTCCC)n Simple_repeat Simple_repeat 1 28 0 700 155 35 17 chr9 18450280 18450454 -99412173 + CT-rich Low_complexity Low_complexity 2 178 0 1894 167 57 50 chr9 18450476 18450913 -99411714 - MLT2B1 LTR ERVL -80 440 1 271 240 0 13 chr9 18450913 18450988 -99411639 - MER117 DNA MER1_type -116 81 8 540 274 52 7 chr9 18451506 18451641 -99410986 + MIR3 SINE MIR 20 160 -48 1777 65 0 0 chr9 18451883 18452097 -99410530 + AluY SINE Alu 87 300 -11 1426 262 146 21 chr9 18453025 18453690 -99408937 + L1ME3A LINE L1 5417 6164 -6 709 142 0 0 chr9 18454689 18454795 -99407832 - AluSg/x SINE Alu -19 291 186 2454 36 3 10 chr9 18455834 18456136 -99406491 + AluY SINE Alu 1 300 -11 24 0 0 0 chr9 18456231 18456255 -99406372 + AT_rich Low_complexity Low_complexity 1 24 0 1921 118 7 0 chr9 18456255 18456525 -99406102 - AluSq SINE Alu -5 308 37 500 290 71 29 chr9 18457312 18457718 -99404909 + MLT2E LTR ERVL 1 663 0 201 39 0 0 chr9 18458334 18458360 -99404267 + (TTA)n Simple_repeat Simple_repeat 2 27 0 353 179 36 0 chr9 18458620 18458704 -99403923 - HsTC2 DNA Tc2 -66 1832 1746 2220 97 45 0 chr9 18458707 18458995 -99403632 + AluSx SINE Alu 1 301 -11 640 233 230 19 chr9 18459426 18459743 -99402884 + MER113 DNA MER1_type? 135 518 -3 2150 122 0 0 chr9 18459764 18460058 -99402569 - AluSq SINE Alu -19 294 1 1490 210 95 29 chr9 18460279 18460838 -99401789 - MLT1E2 LTR MaLR -6 620 1 21 57 0 0 chr9 18461970 18462005 -99400622 + AT_rich Low_complexity Low_complexity 1 35 0 2327 106 13 0 chr9 18462483 18462784 -99399843 + AluSq SINE Alu 1 305 -8 898 246 20 0 chr9 18463036 18463231 -99399396 + MIR SINE MIR 8 206 -56 252 336 87 19 chr9 18463275 18463379 -99399248 + L2 LINE L2 271 381 -2933 211 378 53 20 chr9 18463500 18463651 -99398976 + L2 LINE L2 577 732 -2582 2758 176 40 4 chr9 18463658 18464181 -99398446 + MER44D DNA MER2_type 6 602 -3 2255 92 7 0 chr9 18464396 18464689 -99397938 - AluSq SINE Alu -18 295 1 2276 84 0 3 chr9 18465354 18465641 -99396986 + AluSg SINE Alu 1 286 -24 307 243 44 66 chr9 18465751 18465796 -99396831 - L1ME4a LINE L1 -211 5910 5866 1623 168 61 18 chr9 18465796 18465869 -99396758 - MER2 DNA MER2_type -1 343 275 1937 164 0 0 chr9 18465869 18466161 -99396466 + AluJb SINE Alu 1 292 -20 1623 168 61 18 chr9 18466161 18466415 -99396212 - MER2 DNA MER2_type -69 275 2 307 243 44 66 chr9 18466415 18466550 -99396077 - L1ME4a LINE L1 -255 5866 5734 2046 81 0 0 chr9 18466709 18466968 -99395659 + AluY SINE Alu 41 299 -12 308 319 49 10 chr9 18467064 18467268 -99395359 - L1ME4a LINE L1 -462 5659 5448 829 182 38 19 chr9 18467355 18467514 -99395113 + FRAM SINE Alu 2 163 -3 458 263 0 0 chr9 18467630 18467744 -99394883 + MLT1J1 LTR MaLR 6 119 -327 888 273 122 35 chr9 18467762 18468195 -99394432 - MLT1E2 LTR MaLR -81 497 52 574 150 60 15 chr9 18468789 18468922 -99393705 - L1MB4 LINE L1 -4 6176 6038 1596 204 18 0 chr9 18469059 18469343 -99393284 + AluJo SINE Alu 1 289 -23 234 0 0 0 chr9 18469353 18469379 -99393248 + (TAA)n Simple_repeat Simple_repeat 3 28 0 2351 87 0 3 chr9 18470213 18470511 -99392116 + AluSq SINE Alu 1 297 -16 22 35 0 0 chr9 18470690 18470719 -99391908 + AT_rich Low_complexity Low_complexity 1 29 0 890 307 36 16 chr9 18473744 18474190 -99388437 - L1ME3A LINE L1 -230 5940 5486 266 153 17 0 chr9 18474211 18474270 -99388357 + (TA)n Simple_repeat Simple_repeat 1 60 0 260 241 168 0 chr9 18474308 18474541 -99388086 - L1ME3A LINE L1 -739 5427 5162 1280 167 35 60 chr9 18474551 18474773 -99387854 - L1MD2 LINE L1 -10 6349 6136 2418 68 0 0 chr9 18474773 18475067 -99387560 - AluY SINE Alu -17 294 1 1280 167 35 60 chr9 18475067 18475161 -99387466 - L1MD2 LINE L1 -223 6136 6041 615 217 84 0 chr9 18475396 18475539 -99387088 - L1MD2 LINE L1 -318 6041 5887 445 134 24 0 chr9 18475610 18475692 -99386935 - Charlie4 DNA MER1_type 0 1961 1878 751 227 76 22 chr9 18475704 18475929 -99386698 - L1MD2 LINE L1 -495 5669 5433 2830 146 18 81 chr9 18475940 18476592 -99386035 - L1MC1 LINE L1 -5 6328 5718 2136 174 33 2 chr9 18476673 18477069 -99385558 - MSTB LTR MaLR -18 408 1 2315 202 39 32 chr9 18477069 18477427 -99385200 - L1MC1 LINE L1 -621 5723 5369 2246 108 3 13 chr9 18477427 18477742 -99384885 - AluSx SINE Alu 0 312 1 2315 202 39 32 chr9 18477742 18478593 -99384034 - L1MC1 LINE L1 -975 5369 4537 1531 178 24 13 chr9 18478631 18479096 -99383531 - MLT2B1 LTR ERVL 0 520 2 1681 236 58 14 chr9 18479111 18479487 -99383140 - L1MD2 LINE L1 -898 5248 4833 1760 180 45 7 chr9 18479487 18479776 -99382851 + AluJo SINE Alu 1 300 -12 1681 236 58 14 chr9 18479776 18480018 -99382609 - L1MD2 LINE L1 -1313 4833 4603 631 218 224 92 chr9 18480020 18480099 -99382528 + MSTD LTR MaLR 1 68 -328 2368 70 3 7 chr9 18480099 18480397 -99382230 + AluSc SINE Alu 1 297 -12 631 218 224 92 chr9 18480397 18480603 -99382024 + MSTD LTR MaLR 68 343 -53 1771 156 3 59 chr9 18480603 18480924 -99381703 - AluJo SINE Alu -9 303 1 631 218 224 92 chr9 18480924 18480986 -99381641 + MSTD LTR MaLR 343 395 -1 421 309 46 7 chr9 18480991 18481273 -99381354 - L1MD2 LINE L1 -1545 4601 4309 2153 117 7 0 chr9 18481294 18481593 -99381034 + AluSp SINE Alu 1 301 -12 696 187 30 50 chr9 18481598 18481796 -99380831 - L1MA9 LINE L1 -5 7267 7074 23 68 0 0 chr9 18481796 18481840 -99380787 + AT_rich Low_complexity Low_complexity 1 44 0 7493 167 23 37 chr9 18481888 18482205 -99380422 - L1MA9 LINE L1 -182 7090 6770 7896 193 18 10 chr9 18482205 18484715 -99377912 - L1PA15 LINE L1 -1 6164 3638 7493 167 23 37 chr9 18484715 18485586 -99377041 - L1MA9 LINE L1 -502 6770 5888 2371 88 0 0 chr9 18485586 18485883 -99376744 - AluSc SINE Alu -12 297 1 7493 167 23 37 chr9 18485883 18487077 -99375550 - L1MA9 LINE L1 -1384 5888 4741 275 133 0 0 chr9 18487080 18487125 -99375502 - U5 snRNA snRNA -67 49 5 289 247 0 0 chr9 18487126 18487203 -99375424 - L1MD2 LINE L1 -2351 3795 3719 5569 248 71 18 chr9 18487611 18490847 -99371780 - L1MA9 LINE L1 -2410 4696 1589 755 234 0 13 chr9 18490894 18491052 -99371575 + Tigger1 DNA MER2_type 2 157 -2261 * 1304 148 0 9 chr9 18491041 18491258 -99371369 + Tigger1 DNA MER2_type 2202 2416 -2 973 174 14 50 chr9 18491258 18491476 -99371151 - L1MA9 LINE L1 -6786 244 35 2874 245 34 5 chr9 18491591 18492469 -99370158 - L1MD2 LINE L1 -3007 3139 2236 2345 99 3 0 chr9 18493408 18493720 -99368907 + AluSp SINE Alu 1 313 0 2196 102 17 0 chr9 18494342 18494636 -99367991 + AluSc SINE Alu 1 299 -10 490 300 54 77 chr9 18496164 18496477 -99366150 - L2 LINE L2 -50 3222 2917 260 83 125 0 chr9 18497806 18497854 -99364773 - MLT2A1 LTR ERVL 0 453 400 378 169 28 11 chr9 18497855 18498032 -99364595 + (TA)n Simple_repeat Simple_repeat 1 180 0 580 65 71 12 chr9 18498061 18498230 -99364397 + (TA)n Simple_repeat Simple_repeat 2 180 0 375 168 43 0 chr9 18498261 18498517 -99364110 + (TA)n Simple_repeat Simple_repeat 1 267 0 2936 86 5 10 chr9 18498518 18498924 -99363703 - MLT2A1 LTR ERVL -40 404 1 2571 195 11 6 chr9 18498976 18499505 -99363122 + L1MB4 LINE L1 5649 6180 0 466 313 79 45 chr9 18500032 18500476 -99362151 + MLT1J LTR MaLR 1 459 -52 2021 129 52 19 chr9 18500751 18501114 -99361513 - THE1C LTR MaLR 0 375 1 317 95 167 0 chr9 18501697 18501781 -99360846 - THE1C LTR MaLR -268 107 10 2261 57 60 20 chr9 18502173 18502472 -99360155 - AluY SINE Alu 0 311 1 552 225 58 0 chr9 18502541 18502661 -99359966 + L2 LINE L2 3187 3313 0 26 0 0 0 chr9 18503171 18503197 -99359430 + AT_rich Low_complexity Low_complexity 1 26 0 182 268 0 0 chr9 18503271 18503312 -99359315 - MIR SINE MIR 0 262 222 330 352 132 4 chr9 18504048 18504298 -99358329 - L2 LINE L2 -129 3184 2903 1777 160 11 18 chr9 18504494 18504796 -99357831 + AluJb SINE Alu 3 302 0 1331 327 110 31 chr9 18504910 18505058 -99357569 + L2 LINE L2 2211 2346 -967 2172 132 0 0 chr9 18505058 18505362 -99357265 - AluSx SINE Alu -8 304 1 1331 327 110 31 chr9 18505362 18506220 -99356407 + L2 LINE L2 2346 3303 -10 509 225 11 121 chr9 18506304 18506351 -99356276 + MER5B DNA MER1_type 1 52 -126 2394 80 0 3 chr9 18506351 18506651 -99355976 - AluY SINE Alu -12 299 1 509 225 11 121 chr9 18506651 18506785 -99355842 + MER5B DNA MER1_type 52 162 -16 674 310 155 3 chr9 18507099 18507396 -99355231 + L2 LINE L2 2971 3312 -1 2504 56 0 0 chr9 18507551 18507857 -99354770 - AluY SINE Alu -5 306 1 189 307 99 50 chr9 18508091 18508192 -99354435 - L2 LINE L2 -15 3298 3193 327 286 11 0 chr9 18508676 18508767 -99353860 + LTR33 LTR ERVL 1 92 -429 346 280 82 33 chr9 18508861 18508982 -99353645 + LTR33 LTR ERVL 264 378 -143 2142 75 41 10 chr9 18508982 18509276 -99353351 + AluY SINE Alu 1 303 -8 346 280 82 33 chr9 18509276 18509397 -99353230 + LTR33 LTR ERVL 378 518 -3 25 0 0 0 chr9 18510977 18511002 -99351625 + AT_rich Low_complexity Low_complexity 1 25 0 4177 169 20 35 chr9 18511398 18511620 -99351007 + L1MB5 LINE L1 5271 5495 -679 1895 65 4 15 chr9 18511620 18511861 -99350766 + L1PA5 LINE L1 5892 6148 -6 4177 169 20 35 chr9 18511861 18512501 -99350126 + L1MB5 LINE L1 5495 6120 -54 1953 148 7 0 chr9 18512517 18512820 -99349807 - AluSx SINE Alu -7 305 1 481 313 55 15 chr9 18513220 18513421 -99349206 + MIR SINE MIR 49 257 -5 2161 32 0 4 chr9 18515983 18516229 -99346398 - AluY SINE Alu -44 267 23 370 204 179 40 chr9 18517098 18517299 -99345328 + MER112 DNA MER1_type 26 254 -6 34 0 0 0 chr9 18518628 18518662 -99343965 + AT_rich Low_complexity Low_complexity 1 34 0 2201 113 0 0 chr9 18518704 18519006 -99343621 - AluSg SINE Alu -8 302 1 1807 141 4 0 chr9 18519030 18519292 -99343335 + AluSx SINE Alu 32 294 -18 1482 179 61 20 chr9 18519318 18519615 -99343012 - AluJo SINE Alu -3 309 1 1180 123 25 64 chr9 18519938 18520064 -99342563 + L1MA8 LINE L1 6062 6176 -115 1451 195 31 14 chr9 18520064 18520356 -99342271 - AluJb SINE Alu -12 300 4 1180 123 25 64 chr9 18520356 18520464 -99342163 + L1MA8 LINE L1 6176 6287 -4 295 301 72 0 chr9 18520470 18520663 -99341964 + L1M4 LINE L1 5023 5229 -917 270 200 176 12 chr9 18520690 18520775 -99341852 - MLT1J LTR MaLR -299 212 114 340 297 142 29 chr9 18520862 18521245 -99341382 - L2 LINE L2 -140 3173 2733 481 294 25 70 chr9 18521252 18521422 -99341205 - L2 LINE L2 -682 2632 2471 2520 84 0 0 chr9 18521422 18521730 -99340897 + AluSg SINE Alu 1 308 -2 481 294 25 70 chr9 18521730 18521760 -99340867 - L2 LINE L2 -843 2471 2441 1473 96 37 23 chr9 18521769 18521987 -99340640 - MER30 DNA MER1_type -9 221 1 747 270 46 23 chr9 18521998 18522257 -99340370 - L2 LINE L2 -874 2440 2176 472 210 117 25 chr9 18522257 18522419 -99340208 + MER5B DNA MER1_type 1 177 -1 571 254 86 29 chr9 18522429 18522638 -99339989 - L2 LINE L2 -1369 1945 1725 329 232 105 28 chr9 18524193 18524374 -99338253 + Charlie7 DNA MER1_type 2418 2612 0 2673 10 0 0 chr9 18524434 18524761 -99337866 - AluYb8 SINE Alu 0 327 1 287 283 101 51 chr9 18524761 18524899 -99337728 - MER5A DNA MER1_type -37 152 8 726 304 98 24 chr9 18525403 18525955 -99336672 - HAL1b LINE L1 -701 1692 344 2063 150 49 3 chr9 18526011 18526358 -99336269 + MLT1A1 LTR MaLR 1 363 -2 27 87 0 0 chr9 18526367 18526436 -99336191 + AT_rich Low_complexity Low_complexity 1 69 0 348 322 49 7 chr9 18527340 18527483 -99335144 - L1ME4a LINE L1 -295 6062 5914 296 232 61 12 chr9 18527511 18527593 -99335034 + MER20 DNA MER1_type 93 178 -41 647 232 23 64 chr9 18527660 18527880 -99334747 - L1MC5 LINE L1 -31 7930 7720 2655 220 45 7 chr9 18527880 18528429 -99334198 + MER82 DNA MER2_type 1 570 -83 19646 103 10 36 chr9 18528441 18529126 -99333501 - L1PA7 LINE L1 0 6154 5453 2501 77 0 0 chr9 18529126 18529437 -99333190 - AluY SINE Alu 0 311 1 19646 103 10 36 chr9 18529437 18534214 -99328413 - L1PA7 LINE L1 -701 5453 937 5642 61 1 0 chr9 18534214 18534901 -99327726 + LTR12 LTR ERV1 1 688 0 19646 103 10 36 chr9 18534901 18535808 -99326819 - L1PA7 LINE L1 -5217 937 8 362 214 0 12 chr9 18535813 18535897 -99326730 + MER82 DNA MER2_type 561 643 -10 372 238 176 42 chr9 18535898 18536302 -99326325 - L1MC5 LINE L1 -240 7721 7264 670 120 0 128 chr9 18536303 18536436 -99326191 - Tigger1 DNA MER2_type -1 2417 2302 1166 204 4 0 chr9 18537100 18537326 -99325301 + MLT2B1 LTR ERVL 1 227 -293 2285 139 34 5 chr9 18537363 18537751 -99324876 + Tigger4(Zombi) DNA MER2_type 2333 2731 0 1328 212 70 0 chr9 18537755 18538099 -99324528 - L1M4 LINE L1 -2229 3917 3550 468 0 0 0 chr9 18538742 18538794 -99323833 + (CA)n Simple_repeat Simple_repeat 2 53 0 987 152 81 30 chr9 18538919 18539117 -99323510 - MER2 DNA MER2_type -134 211 4 215 245 0 0 chr9 18539122 18539171 -99323456 + (TATATG)n Simple_repeat Simple_repeat 5 53 0 921 256 156 22 chr9 18539789 18540160 -99322467 + MER39 LTR ERV1 262 682 -25 1109 217 38 0 chr9 18540184 18540419 -99322208 - L1ME4a LINE L1 -509 5911 5668 1251 131 54 31 chr9 18540419 18540641 -99321986 - AluSg/x SINE Alu -8 304 78 3921 235 38 9 chr9 18540641 18541912 -99320715 - L1ME4a LINE L1 -744 5676 4314 * 13530 186 48 15 chr9 18541908 18542236 -99320391 - L1 LINE L1 -757 6808 6492 2467 72 0 0 chr9 18542236 18542543 -99320084 - AluY SINE Alu -4 307 1 13530 186 48 15 chr9 18542543 18543690 -99318937 - L1 LINE L1 -1073 6492 5384 2137 118 7 10 chr9 18543690 18543996 -99318631 - AluSx SINE Alu -7 305 1 13530 186 48 15 chr9 18543996 18545592 -99317035 - L1 LINE L1 -2181 5384 3842 1877 168 0 19 chr9 18545592 18545901 -99316726 - AluJo SINE Alu -7 305 3 13530 186 48 15 chr9 18545901 18549116 -99313511 - L1 LINE L1 -3723 3842 4 489 201 12 104 chr9 18549121 18549205 -99313422 - L1 LINE L1 -2191 3955 3892 1465 209 29 10 chr9 18549205 18549511 -99313116 - AluJb SINE Alu 0 312 1 489 201 12 104 chr9 18549511 18549590 -99313037 - L1 LINE L1 -2254 3892 3807 342 233 0 11 chr9 18549603 18549693 -99312934 - L1 LINE L1 -2476 3670 3582 3450 227 102 11 chr9 18549808 18551004 -99311623 - L1ME4a LINE L1 -4075 3492 2188 * 6553 187 26 32 chr9 18550982 18553520 -99309107 - L1MA4A LINE L1 0 7722 5214 4987 230 110 21 chr9 18553534 18555485 -99307142 - L1M4 LINE L1 -743 5403 3288 3104 135 29 22 chr9 18555468 18556016 -99306611 - L1PA16 LINE L1 -263 5903 5352 * 1092 161 70 23 chr9 18556022 18556428 -99306199 - LTR54 LTR ERV1 -25 485 1 22440 28 2 0 chr9 18556428 18559906 -99302721 - L1PA3 LINE L1 0 6155 2674 6130 199 24 40 chr9 18559906 18561189 -99301438 - L1PA16 LINE L1 -783 5363 4107 6398 82 13 8 chr9 18561189 18562207 -99300420 + L1PA8 LINE L1 5145 6172 0 6130 199 24 40 chr9 18562207 18562445 -99300182 - L1PA16 LINE L1 -2039 4107 3867 43509 42 2 1 chr9 18562497 18568634 -99293993 - L1PA4 LINE L1 -3 6152 7 1665 234 48 24 chr9 18568639 18569263 -99293364 - L1M4 LINE L1 -2914 3232 2594 440 180 34 11 chr9 18569263 18569352 -99293275 - Tigger1 DNA MER2_type -26 2392 2302 600 281 172 38 chr9 18569357 18570072 -99292555 - L1M4 LINE L1 -1713 4433 3623 23 0 0 0 chr9 18572450 18572473 -99290154 + AT_rich Low_complexity Low_complexity 1 23 0 670 210 48 36 chr9 18572778 18572823 -99289804 - MER5A DNA MER1_type -2 187 144 1219 218 121 18 chr9 18572823 18573162 -99289465 - MLT1A2 LTR MaLR 0 374 1 670 210 48 36 chr9 18573162 18573283 -99289344 - MER5A DNA MER1_type -45 144 19 3185 108 2 55 chr9 18573525 18574055 -99288572 - L1PA12 LINE L1 -16 6152 5651 23 0 0 0 chr9 18574488 18574511 -99288116 + AT_rich Low_complexity Low_complexity 1 23 0 2892 294 74 25 chr9 18574653 18575435 -99287192 + L2 LINE L2 1107 1956 -1358 2138 102 8 54 chr9 18575435 18575807 -99286820 + THE1A LTR MaLR 1 355 0 2892 294 74 25 chr9 18575807 18576076 -99286551 + L2 LINE L2 1956 2210 -1104 613 184 10 0 chr9 18576081 18576184 -99286443 - Tigger7 DNA MER2_type -1 2586 2483 1164 224 9 9 chr9 18576186 18576418 -99286209 - Tigger7 DNA MER2_type -471 234 3 1700 282 108 36 chr9 18576426 18577444 -99285183 + L2 LINE L2 2226 3311 -2 367 317 52 23 chr9 18577505 18577811 -99284816 - L1MEd LINE L1 -4909 1507 1193 25 31 0 0 chr9 18579400 18579432 -99283195 + AT_rich Low_complexity Low_complexity 1 32 0 734 177 146 66 chr9 18579792 18580018 -99282609 - MSTA LTR MaLR 0 428 185 610 40 0 0 chr9 18580045 18580120 -99282507 - L1PA6 LINE L1 -7 6147 6073 516 86 0 0 chr9 18580120 18580190 -99282437 + L1P2 LINE L1 5577 5646 -509 905 179 106 0 chr9 18580190 18580369 -99282258 - MSTA LTR MaLR -230 198 1 309 374 45 30 chr9 18581864 18582129 -99280498 - L2 LINE L2 -850 2464 2196 1964 164 29 11 chr9 18582495 18582843 -99279784 - MLT2D LTR ERVL -55 359 6 374 211 193 0 chr9 18582845 18582959 -99279668 - L1MEd LINE L1 -5124 783 648 926 211 79 94 chr9 18583019 18583361 -99279266 - MER57A LTR ERV1 -4 399 63 1626 206 11 65 chr9 18583422 18583855 -99278772 - L1MEd LINE L1 -5657 769 360 1633 218 3 12 chr9 18583902 18584241 -99278386 - L1MEd LINE L1 -6071 355 20 2738 13 0 0 chr9 18586458 18586760 -99275867 - AluYa5 SINE Alu -9 302 1 5580 101 121 92 chr9 18586775 18588272 -99274355 + pTR5 LTR ERV1 743 2438 0 5776 245 60 19 chr9 18588275 18588301 -99274326 + L1M4 LINE L1 3063 3086 -3085 2473 68 0 0 chr9 18588301 18588595 -99274032 - AluY SINE Alu -17 294 1 5776 245 60 19 chr9 18588595 18590844 -99271783 + L1M4 LINE L1 3086 5428 -743 8708 226 84 20 chr9 18591074 18592099 -99270528 - L1MDa LINE L1 -3125 3415 2457 297 0 0 0 chr9 18592099 18592132 -99270495 + (TTATA)n Simple_repeat Simple_repeat 5 37 0 8708 226 84 20 chr9 18592132 18594297 -99268330 - L1MDa LINE L1 -4083 2457 20 192 314 100 0 chr9 18597264 18597334 -99265293 + L2 LINE L2 2905 2981 -291 333 47 0 0 chr9 18597356 18597399 -99265228 + (TG)n Simple_repeat Simple_repeat 2 44 0 1722 173 4 0 chr9 18597399 18597671 -99264956 - AluJb SINE Alu -34 278 6 316 265 113 46 chr9 18598717 18598868 -99263759 + MIR SINE MIR 52 212 -50 225 252 69 30 chr9 18599227 18599358 -99263269 - L1ME LINE L1 -288 5833 5698 282 155 0 42 chr9 18599555 18599626 -99263001 + (TA)n Simple_repeat Simple_repeat 1 68 0 2377 258 58 60 chr9 18600183 18600642 -99261985 - L1MEc LINE L1 -5242 1154 695 2459 78 0 0 chr9 18600642 18600950 -99261677 - AluY SINE Alu -3 308 1 2377 258 58 60 chr9 18600950 18601054 -99261573 - L1MEc LINE L1 -5701 695 592 1998 110 10 17 chr9 18601054 18601353 -99261274 - AluSx SINE Alu -13 299 3 2377 258 58 60 chr9 18601353 18601902 -99260725 - L1MEc LINE L1 -5804 592 44 2240 233 94 0 chr9 18602522 18603055 -99259572 - MER119 DNA MER1_type 0 583 1 923 244 30 61 chr9 18603727 18603832 -99258795 - MIR SINE MIR -2 260 153 2303 100 0 0 chr9 18603832 18604132 -99258495 - AluSg SINE Alu -10 300 1 923 244 30 61 chr9 18604132 18604288 -99258339 - MIR SINE MIR -109 153 7 2263 125 14 3 chr9 18604438 18604789 -99257838 - THE1A LTR MaLR 0 355 1 11520 95 9 0 chr9 18604789 18606355 -99256272 - THE1A-int LTR MaLR 0 1580 1 2262 121 23 3 chr9 18606355 18606703 -99255924 - THE1A LTR MaLR 0 355 1 250 290 47 47 chr9 18607195 18607302 -99255325 - L2 LINE L2 -4 3268 3162 2083 139 0 0 chr9 18607610 18607919 -99254708 - AluSx SINE Alu -3 309 1 182 206 0 0 chr9 18607961 18607995 -99254632 + MIR SINE MIR 111 144 -64 64 35 0 0 chr9 18608226 18608311 -99254316 + AT_rich Low_complexity Low_complexity 1 85 0 2151 119 60 5 chr9 18608311 18608681 -99253946 - L1MA3 LINE L1 0 6305 5916 348 227 13 0 chr9 18608681 18608756 -99253871 + MIR SINE MIR 96 171 -91 342 141 0 76 chr9 18608858 18608950 -99253677 - L1PA10 LINE L1 0 6168 6084 5511 170 5 21 chr9 18608952 18610064 -99252563 - L1 LINE L1 -750 5396 4303 31892 112 23 45 chr9 18610068 18610661 -99251966 - L1PA7 LINE L1 -20 6134 5530 2307 114 0 0 chr9 18610661 18610968 -99251659 - AluY SINE Alu -4 307 1 31892 112 23 45 chr9 18610968 18615737 -99246890 - L1PA7 LINE L1 -624 5530 933 5642 61 1 0 chr9 18615737 18616424 -99246203 + LTR12 LTR ERV1 1 688 0 31892 112 23 45 chr9 18616424 18617331 -99245296 - L1PA7 LINE L1 -5221 933 8 362 214 0 12 chr9 18617336 18617420 -99245207 + MER82 DNA MER2_type 561 643 -10 372 238 176 42 chr9 18617421 18617825 -99244802 - L1MC5 LINE L1 -240 7721 7264 670 120 0 128 chr9 18617826 18617959 -99244668 - Tigger1 DNA MER2_type -1 2417 2302 1166 204 4 0 chr9 18618623 18618849 -99243778 + MLT2B1 LTR ERVL 1 227 -293 2285 139 34 5 chr9 18618886 18619274 -99243353 + Tigger4(Zombi) DNA MER2_type 2333 2731 0 3110 238 111 5 chr9 18619278 18620365 -99242262 - L1 LINE L1 -2229 3917 2715 1823 301 73 12 chr9 18620368 18620932 -99241695 - L1M4b LINE L1 -6066 793 196 292 184 150 54 chr9 18621032 18621179 -99241448 - L1MC/D LINE L1 -2328 5480 5320 2380 97 0 0 chr9 18622980 18623290 -99239337 - AluY SINE Alu -1 310 1 2333 141 0 19 chr9 18623806 18624176 -99238451 - THE1B LTR MaLR -1 363 1 228 298 221 23 chr9 18624394 18624525 -99238102 + L2 LINE L2 3115 3271 -1 1731 180 32 0 chr9 18624622 18624905 -99237722 + AluSx SINE Alu 1 292 -20 2085 133 0 0 chr9 18624906 18625207 -99237420 + AluSx SINE Alu 1 301 -11 1945 118 62 0 chr9 18625530 18625819 -99236808 - AluSx SINE Alu -5 307 1 2282 102 0 13 chr9 18625896 18626210 -99236417 - AluSg SINE Alu 0 310 1 3487 278 120 33 chr9 18626332 18628211 -99234416 + HAL1 LINE L1 1 2043 -464 425 221 0 21 chr9 18628778 18628873 -99233754 + HAL1 LINE L1 2032 2124 -383 1533 193 7 14 chr9 18630074 18630370 -99232257 - AluJo SINE Alu -18 294 1 4875 170 25 9 chr9 18630538 18631539 -99231088 - L1 LINE L1 -1055 6112 5096 1002 202 65 28 chr9 18631519 18631841 -99230786 - L1 LINE L1 -4647 2451 2118 * 2241 157 0 0 chr9 18631844 18632189 -99230438 + MER7A DNA MER2_type 4 346 0 961 280 43 62 chr9 18632189 18632771 -99229856 - L1 LINE L1 -5068 2100 1530 22 80 0 0 chr9 18634257 18634307 -99228320 + AT_rich Low_complexity Low_complexity 1 50 0 3212 166 35 20 chr9 18634835 18635486 -99227141 - L1MD1 LINE L1 0 6242 5582 2195 116 0 7 chr9 18635486 18635789 -99226838 + AluSx SINE Alu 1 301 -11 13383 142 22 45 chr9 18635909 18637199 -99225428 + L1P3 LINE L1 504 1821 -4640 2436 68 0 3 chr9 18637199 18637509 -99225118 + AluY SINE Alu 1 309 -2 13383 142 22 45 chr9 18637509 18639303 -99223324 + L1P3 LINE L1 1821 3546 -2915 40199 70 3 0 chr9 18639452 18645559 -99217068 + L1PA5 LINE L1 30 6154 0 8529 188 44 10 chr9 18645888 18647819 -99214808 + L1 LINE L1 2322 4317 -1829 2686 160 44 2 chr9 18647829 18648279 -99214348 + L1P3 LINE L1 11 479 -5982 3791 81 1 116 chr9 18648279 18648968 -99213659 - LTR66 LTR ERVL 0 610 1 1572 68 16 2 chr9 18648968 18649328 -99213299 - HERVL66 LTR ERVL 0 4329 3881 1807 169 0 3 chr9 18649361 18649651 -99212976 - HERVL66 LTR ERVL -977 3352 3064 520 120 0 0 chr9 18649645 18649720 -99212907 - HERVL66 LTR ERVL -1603 2726 2652 * 2764 86 8 0 chr9 18649702 18650074 -99212553 - HERVL66 LTR ERVL -2532 1797 1423 562 84 0 0 chr9 18650062 18650133 -99212494 - HERVL66 LTR ERVL -3199 1130 1060 * 1252 98 95 116 chr9 18650145 18650430 -99212197 + LTR66 LTR ERVL 332 610 0 594 347 39 26 chr9 18650607 18650915 -99211712 + L2 LINE L2 2343 2654 -660 488 139 9 35 chr9 18651057 18651172 -99211455 + CT-rich Low_complexity Low_complexity 3 114 0 1826 112 0 0 chr9 18651177 18651418 -99211209 - AluSc SINE Alu -68 241 1 207 328 0 0 chr9 18651924 18651985 -99210642 + CT-rich Low_complexity Low_complexity 2 62 0 32 0 0 0 chr9 18652161 18652193 -99210434 + AT_rich Low_complexity Low_complexity 1 32 0 21 71 0 0 chr9 18652632 18652674 -99209953 + AT_rich Low_complexity Low_complexity 1 42 0 663 57 0 0 chr9 18653490 18653578 -99209049 + (TCTA)n Simple_repeat Simple_repeat 3 90 0 23 0 0 0 chr9 18653704 18653727 -99208900 + AT_rich Low_complexity Low_complexity 1 23 0 472 369 100 17 chr9 18654140 18654612 -99208015 - L3 LINE CR1 -1 1576 1066 1611 158 14 3 chr9 18654908 18655192 -99207435 + L1PA16 LINE L1 5871 6157 -9 1232 184 139 32 chr9 18655679 18655989 -99206638 + MER2 DNA MER2_type 1 343 -1 228 121 0 0 chr9 18656275 18656308 -99206319 + MER2 DNA MER2_type 1 33 -312 391 279 132 20 chr9 18656588 18656989 -99205638 + L1M4 LINE L1 4140 4585 -1561 782 281 31 8 chr9 18657005 18657314 -99205313 - LTR33 LTR ERVL -136 385 34 341 311 128 16 chr9 18657332 18657644 -99204983 - L1M4 LINE L1 -1447 4699 4353 587 271 134 40 chr9 18657775 18658396 -99204231 - HAL1b LINE L1 -31 1317 639 255 279 0 0 chr9 18658441 18658502 -99204125 + MLT1I LTR MaLR 73 133 -276 2277 152 40 24 chr9 18658811 18659232 -99203395 + MSTC LTR MaLR 1 428 0 330 188 62 62 chr9 18660085 18660165 -99202462 - L2 LINE L2 -43 3270 3191 24 0 0 0 chr9 18660337 18660361 -99202266 + AT_rich Low_complexity Low_complexity 1 24 0 10454 118 5 8 chr9 18660361 18661040 -99201587 - L1PA10 LINE L1 -6 6477 5797 2242 105 3 0 chr9 18661040 18661336 -99201291 - AluSc SINE Alu -12 297 1 10454 118 5 8 chr9 18661336 18663092 -99199535 - L1PA10 LINE L1 -686 5797 4048 1035 143 7 0 chr9 18663092 18663270 -99199357 - AluSq SINE Alu 0 306 128 4189 162 33 4 chr9 18663270 18664080 -99198547 - L1PA10 LINE L1 -2409 4052 3219 630 159 0 0 chr9 18664081 18664194 -99198433 - L1PA2 LINE L1 -1 6154 6042 1021 167 0 42 chr9 18664340 18664604 -99198023 - pTR5 LTR ERV1 -1439 999 747 1191 193 12 12 chr9 18664604 18664858 -99197769 - L1PA10 LINE L1 -5618 257 4 228 35 0 0 chr9 18665184 18665213 -99197414 + (GA)n Simple_repeat Simple_repeat 1 29 0 * 378 0 0 0 chr9 18665212 18665254 -99197373 + (TG)n Simple_repeat Simple_repeat 2 43 0 1525 126 79 65 chr9 18665255 18665532 -99197095 - AluSx SINE Alu -31 281 1 1889 163 27 9 chr9 18666252 18666590 -99196037 - MER2 DNA MER2_type 0 344 1 2275 95 0 3 chr9 18668176 18668471 -99194156 + AluSc SINE Alu 1 294 -15 181 197 0 105 chr9 18668525 18668601 -99194026 - MIR SINE MIR -95 167 100 1412 291 223 41 chr9 18669035 18669276 -99193351 + L2 LINE L2 1986 2182 -1131 1230 136 38 34 chr9 18669276 18669511 -99193116 - MER46A DNA MER2_type 0 236 1 1412 291 223 41 chr9 18669511 18670140 -99192487 + L2 LINE L2 2182 3011 -302 232 259 17 0 chr9 18671004 18671062 -99191565 - L1ME4a LINE L1 -82 5973 5915 216 0 0 0 chr9 18671295 18671319 -99191308 + (CA)n Simple_repeat Simple_repeat 2 25 0 2052 125 7 7 chr9 18671388 18671685 -99190942 - AluSx SINE Alu -15 297 1 551 272 140 9 chr9 18672155 18672383 -99190244 - MIR SINE MIR 0 262 5 991 199 93 72 chr9 18673811 18674143 -99188484 - MER2 DNA MER2_type 0 345 7 910 204 93 75 chr9 18675434 18675767 -99186860 - MER2 DNA MER2_type 0 345 7 2129 113 7 0 chr9 18676956 18677256 -99185371 - AluSp SINE Alu -11 302 1 1973 129 0 3 chr9 18678080 18678366 -99184261 - AluJb SINE Alu -17 295 11 24 0 0 0 chr9 18678515 18678539 -99184088 + AT_rich Low_complexity Low_complexity 1 24 0 378 0 0 0 chr9 18678779 18678821 -99183806 + (CA)n Simple_repeat Simple_repeat 1 42 0 38 51 0 0 chr9 18679637 18679696 -99182931 + AT_rich Low_complexity Low_complexity 1 59 0 213 65 0 0 chr9 18679778 18679809 -99182818 + (CA)n Simple_repeat Simple_repeat 2 32 0 232 316 26 15 chr9 18680445 18680535 -99182092 + MIR SINE MIR 57 151 -93 1062 277 93 45 chr9 18681117 18681827 -99180800 - L1ME4a LINE L1 -246 5850 5084 2280 108 0 0 chr9 18681827 18682123 -99180504 - AluSq SINE Alu -17 296 1 1062 277 93 45 chr9 18682123 18682220 -99180407 - L1ME4a LINE L1 -1012 5084 4993 822 181 54 66 chr9 18682276 18682326 -99180301 + L1M4 LINE L1 4591 4640 -1506 2160 102 7 3 chr9 18682326 18682629 -99179998 + AluSc SINE Alu 1 304 -5 822 181 54 66 chr9 18682629 18682837 -99179790 + L1M4 LINE L1 4640 4846 -1300 433 206 61 8 chr9 18682835 18682966 -99179661 - L1ME4a LINE L1 -1391 4689 4552 * 2032 225 68 38 chr9 18682970 18683138 -99179489 - L1ME LINE L1 -3205 2875 2714 332 22 22 0 chr9 18683138 18683183 -99179444 + (TA)n Simple_repeat Simple_repeat 1 46 0 2254 70 0 55 chr9 18683184 18683496 -99179131 - AluY SINE Alu -11 300 6 2032 225 68 38 chr9 18683496 18684228 -99178399 - L1ME LINE L1 -3365 2715 1993 306 333 63 43 chr9 18684245 18684596 -99178031 - L1ME LINE L1 -4817 1265 908 873 133 0 0 chr9 18684599 18684727 -99177900 - AluSx SINE Alu -16 296 169 654 117 0 0 chr9 18684738 18684832 -99177795 - AluSx SINE Alu -218 94 1 374 266 132 65 chr9 18684836 18685393 -99177234 - L1ME LINE L1 -5154 916 314 549 352 28 4 chr9 18685418 18685668 -99176959 - L1ME LINE L1 -5809 261 6 382 309 61 35 chr9 18685877 18686560 -99176067 - L1MEd LINE L1 -4613 1697 957 745 193 40 10 chr9 18686569 18686771 -99175856 - L1MCa LINE L1 -3450 2976 2769 1511 213 79 3 chr9 18686773 18687220 -99175407 - L1MCa LINE L1 -3507 2919 2440 515 165 0 0 chr9 18687222 18687301 -99175326 - Tigger5 DNA MER2_type -3 2320 2242 331 230 27 0 chr9 18687291 18687365 -99175262 + Tigger5 DNA MER2_type 2242 2317 -6 * 502 190 0 0 chr9 18687367 18687446 -99175181 - Tigger5 DNA MER2_type -2244 79 1 826 256 80 23 chr9 18687446 18687836 -99174791 - L1MCa LINE L1 -4009 2419 2008 332 340 9 0 chr9 18687836 18687942 -99174685 - L1MCa LINE L1 -4812 1614 1508 1317 273 90 65 chr9 18688229 18688814 -99173813 - L2 LINE L2 -8 3305 2694 2532 64 0 6 chr9 18688814 18689127 -99173500 - AluY SINE Alu 0 311 1 1317 273 90 65 chr9 18689127 18689439 -99173188 - L2 LINE L2 -619 2694 2391 375 73 0 0 chr9 18689623 18689678 -99172949 + (TCCA)n Simple_repeat Simple_repeat 4 58 0 468 198 10 0 chr9 18690089 18690185 -99172442 - MER5A DNA MER1_type -83 106 10 726 276 43 14 chr9 18690326 18690536 -99172091 + MIR SINE MIR 5 220 -42 21 36 0 0 chr9 18691064 18691092 -99171535 + AT_rich Low_complexity Low_complexity 1 28 0 2043 124 0 0 chr9 18691290 18691600 -99171027 - AluSq SINE Alu 0 310 1 588 227 49 31 chr9 18691610 18691773 -99170854 - L1ME LINE L1 -439 5682 5517 23 0 0 0 chr9 18691790 18691813 -99170814 + AT_rich Low_complexity Low_complexity 1 23 0 355 280 72 16 chr9 18692159 18692284 -99170343 + L2 LINE L2 3136 3267 -5 435 83 0 0 chr9 18696200 18696260 -99166367 + (TG)n Simple_repeat Simple_repeat 2 61 0 964 81 188 7 chr9 18696423 18696572 -99166055 - AluY SINE Alu -135 176 1 2357 97 3 0 chr9 18696760 18697059 -99165568 + AluSq SINE Alu 1 300 -13 667 270 130 36 chr9 18697422 18697814 -99164813 + Charlie8 DNA MER1_type 86 514 -1903 21 36 0 0 chr9 18697966 18697994 -99164633 + AT_rich Low_complexity Low_complexity 1 28 0 22 94 0 0 chr9 18698255 18698319 -99164308 + AT_rich Low_complexity Low_complexity 1 64 0 21 0 0 0 chr9 18700210 18700231 -99162396 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr9 18701574 18701603 -99161024 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr9 18701984 18702005 -99160622 + AT_rich Low_complexity Low_complexity 1 21 0 2104 137 0 0 chr9 18703149 18703448 -99159179 - AluSx SINE Alu -13 299 1 1079 177 87 159 chr9 18703478 18703509 -99159118 - MLT2B1 LTR ERVL -11 509 477 243 0 0 0 chr9 18703509 18703536 -99159091 + (CA)n Simple_repeat Simple_repeat 2 28 0 1079 177 87 159 chr9 18703536 18703656 -99158971 - MLT2B1 LTR ERVL -43 477 350 2130 145 45 0 chr9 18703656 18704014 -99158613 + L1PA16 LINE L1 5793 6166 0 1079 177 87 159 chr9 18704014 18704250 -99158377 - MLT2B1 LTR ERVL -170 350 149 2203 109 0 0 chr9 18704325 18704609 -99158018 + AluSc SINE Alu 1 284 -25 1629 162 55 14 chr9 18704745 18705035 -99157592 + AluSx SINE Alu 2 303 -9 512 134 0 41 chr9 18705795 18705892 -99156735 - L1PA12 LINE L1 0 6168 6076 290 98 0 0 chr9 18705892 18705933 -99156694 - L1PA7 LINE L1 -97 6057 6017 * 2939 55 10 0 chr9 18705929 18706503 -99156124 - L1P3 LINE L1 -526 5628 5049 190 175 0 159 chr9 18706655 18706718 -99155909 + L2 LINE L2 3210 3262 -10 21 0 0 0 chr9 18707014 18707035 -99155592 + AT_rich Low_complexity Low_complexity 1 21 0 288 77 0 0 chr9 18707198 18707237 -99155390 + (TTCC)n Simple_repeat Simple_repeat 2 40 0 1792 149 6 40 chr9 18707240 18707561 -99155066 - AluSx SINE Alu -2 310 1 28 29 0 0 chr9 18707561 18707596 -99155031 + AT_rich Low_complexity Low_complexity 1 35 0 1671 173 43 13 chr9 18708961 18709261 -99153366 + AluJo SINE Alu 2 310 -2 1375 177 36 61 chr9 18712743 18713104 -99149523 - L1MB8 LINE L1 -2 6176 5825 259 286 133 9 chr9 18713571 18713676 -99148951 - L2 LINE L2 0 3313 3196 1545 224 100 13 chr9 18713862 18714322 -99148305 - L1ME1 LINE L1 -44 6516 6017 372 213 0 0 chr9 18714321 18714401 -99148226 - L1ME1 LINE L1 -930 5610 5531 * 1774 191 66 66 chr9 18714471 18715093 -99147534 - L1ME1 LINE L1 -4005 2535 1914 1445 136 60 121 chr9 18715096 18715564 -99147063 - THE1C LTR MaLR 0 375 1 2424 214 80 29 chr9 18715567 18716390 -99146237 - L1ME1 LINE L1 -4628 1912 1048 1090 124 14 77 chr9 18716398 18716480 -99146147 - Tigger5 DNA MER2_type 0 2323 2237 2249 102 6 22 chr9 18716480 18716793 -99145834 + AluSx SINE Alu 5 312 0 1090 124 14 77 chr9 18716793 18716919 -99145708 - Tigger5 DNA MER2_type -86 2237 2128 2146 102 3 3 chr9 18716933 18717218 -99145409 - AluSc SINE Alu -24 285 1 13940 116 14 62 chr9 18717218 18718975 -99143652 - L1P4 LINE L1 -685 5798 4067 1035 143 7 0 chr9 18718975 18719153 -99143474 - AluSq SINE Alu 0 306 128 13940 116 14 62 chr9 18719153 18719964 -99142663 - L1P4 LINE L1 -2416 4067 3218 * 42821 33 21 1 chr9 18719962 18725993 -99136634 - L1PA2 LINE L1 0 6155 2 9337 208 30 41 chr9 18725995 18728899 -99133728 - L1P4 LINE L1 -3228 3233 248 1568 73 23 9 chr9 18728900 18729118 -99133509 - pTR5 LTR ERV1 -2046 392 172 382 140 93 72 chr9 18729127 18729224 -99133403 - LTR30 LTR ERV1 -75 624 220 2453 113 24 21 chr9 18729224 18729736 -99132891 - pTR5 LTR ERV1 -418 2020 1195 3550 121 208 110 chr9 18729860 18731096 -99131531 + pTR5 LTR ERV1 892 2410 -28 424 261 20 78 chr9 18731096 18731249 -99131378 - AluSq/x SINE Alu -162 141 24 29 70 0 0 chr9 18731451 18731508 -99131119 + AT_rich Low_complexity Low_complexity 1 57 0 297 303 76 21 chr9 18732626 18732771 -99129856 - L2 LINE L2 -50 3263 3111 1243 195 39 3 chr9 18732956 18733238 -99129389 - L1MB4 LINE L1 -173 6007 5716 336 95 0 40 chr9 18733505 18733579 -99129048 + (TA)n Simple_repeat Simple_repeat 1 71 0 275 338 31 13 chr9 18734106 18734334 -99128293 + L1MC4a LINE L1 5683 5914 -1894 314 279 25 25 chr9 18734376 18734498 -99128129 + (CATATA)n Simple_repeat Simple_repeat 5 126 0 294 288 81 9 chr9 18734647 18734758 -99127869 + L1ME LINE L1 5628 5746 -424 929 228 6 148 chr9 18734822 18734979 -99127648 + L1M4 LINE L1 4969 5147 -999 1717 187 7 3 chr9 18734979 18735262 -99127365 - AluJb SINE Alu -25 287 4 929 228 6 148 chr9 18735262 18735546 -99127081 + L1M4 LINE L1 5147 5334 -812 2263 74 6 58 chr9 18735546 18735871 -99126756 + AluY SINE Alu 1 308 -3 929 228 6 148 chr9 18735871 18735928 -99126699 + L1M4 LINE L1 5334 5397 -749 1696 203 27 44 chr9 18735938 18736154 -99126473 - L1MEc LINE L1 -3054 3372 3154 2612 136 29 17 chr9 18736154 18736631 -99125996 - MER31A LTR ERV1 -2 483 1 1696 203 27 44 chr9 18736631 18736977 -99125650 - L1MEc LINE L1 -3272 3154 2820 1787 31 0 14 chr9 18737005 18737228 -99125399 - L1PA4 LINE L1 -1 6154 5935 752 302 42 52 chr9 18737302 18737805 -99124822 - L1MEc LINE L1 -5792 604 107 200 189 0 0 chr9 18738277 18738314 -99124313 + (TG)n Simple_repeat Simple_repeat 2 38 0 5622 58 22 0 chr9 18738688 18739401 -99123226 - L1PA7 LINE L1 -3 6151 5423 214 177 0 48 chr9 18739446 18739508 -99123119 + T-rich Low_complexity Low_complexity 2 60 0 383 301 89 65 chr9 18739889 18740304 -99122323 - L1MEc LINE L1 -4857 1569 1145 270 198 70 0 chr9 18740306 18740392 -99122235 - L1MEc LINE L1 -5158 1271 1180 1956 149 131 13 chr9 18741025 18741408 -99121219 + MSTA LTR MaLR 1 428 0 1569 186 52 0 chr9 18741627 18741896 -99120731 + AluJb SINE Alu 4 286 -26 23 33 0 0 chr9 18741916 18741946 -99120681 + AT_rich Low_complexity Low_complexity 1 30 0 1386 210 0 57 chr9 18742076 18742390 -99120237 - AluJo SINE Alu -16 296 1 26 74 0 0 chr9 18742470 18742524 -99120103 + AT_rich Low_complexity Low_complexity 1 54 0 20563 166 32 22 chr9 18742885 18744963 -99117664 + L1MA3 LINE L1 24 2080 -5644 2100 139 27 27 chr9 18744963 18745338 -99117289 + THE1C LTR MaLR 1 375 0 20563 166 32 22 chr9 18745338 18745654 -99116973 + L1MA3 LINE L1 2080 2391 -5333 2143 124 3 0 chr9 18745654 18745952 -99116675 + AluSx SINE Alu 4 302 -10 20563 166 32 22 chr9 18745952 18750525 -99112102 + L1MA3 LINE L1 2391 7075 -649 1948 134 10 10 chr9 18750525 18750823 -99111804 + AluSx SINE Alu 1 298 -14 20563 166 32 22 chr9 18750823 18751469 -99111158 + L1MA3 LINE L1 7075 7713 -11 237 237 34 34 chr9 18751662 18751721 -99110906 - L3 LINE CR1 -2 1575 1517 406 316 89 32 chr9 18752272 18752381 -99110246 - HAL1b LINE L1 -33 1315 1214 2451 63 0 16 chr9 18752381 18752697 -99109930 - AluY SINE Alu 0 311 1 406 316 89 32 chr9 18752697 18752900 -99109727 - HAL1b LINE L1 -134 1214 985 773 269 69 98 chr9 18752921 18753215 -99109412 - HAL1b LINE L1 -456 892 591 1858 114 16 70 chr9 18753215 18753530 -99109097 + AluSx SINE Alu 6 303 -9 773 269 69 98 chr9 18753530 18754081 -99108546 - HAL1b LINE L1 -757 591 72 2117 128 0 3 chr9 18754127 18754425 -99108202 - AluSc SINE Alu -12 297 1 1049 239 33 19 chr9 18754790 18755122 -99107505 - L1MEc LINE L1 -833 1954 1704 * 1617 251 35 51 chr9 18755113 18755624 -99107003 - L1MEc LINE L1 -5834 773 271 196 284 52 84 chr9 18755665 18755820 -99106807 + L2 LINE L2 2252 2401 -913 2644 215 43 45 chr9 18755917 18756606 -99106021 - MER76 LTR ERV 0 688 1 295 244 24 37 chr9 18756888 18756970 -99105657 - MLT1H LTR MaLR -330 219 139 243 229 12 24 chr9 18757502 18757585 -99105042 - MLT1I-int LTR MaLR -1653 82 1 317 219 14 0 chr9 18757596 18757669 -99104958 - MLT1I LTR MaLR -20 389 316 321 296 111 40 chr9 18757756 18757955 -99104672 - MLT1I LTR MaLR -123 286 74 283 222 40 10 chr9 18759045 18759144 -99103483 + (TA)n Simple_repeat Simple_repeat 2 103 0 1507 178 59 0 chr9 18759199 18759469 -99103158 + AluJb SINE Alu 6 291 -21 31 0 0 0 chr9 18759473 18759504 -99103123 + AT_rich Low_complexity Low_complexity 1 31 0 2403 71 0 3 chr9 18759590 18759884 -99102743 - AluY SINE Alu -18 293 1 2284 256 59 70 chr9 18760741 18761543 -99101084 - MER21B LTR ERV1 -51 812 20 1730 126 78 3 chr9 18761543 18761836 -99100791 - MER2 DNA MER2_type 0 345 31 28 79 0 0 chr9 18764780 18764843 -99097784 + AT_rich Low_complexity Low_complexity 1 63 0 23 0 0 0 chr9 18765002 18765025 -99097602 + AT_rich Low_complexity Low_complexity 1 23 0 2538 128 0 20 chr9 18765728 18766126 -99096501 + MLT1B LTR MaLR 1 390 0 2111 123 3 16 chr9 18766182 18766490 -99096137 - AluSx SINE Alu -8 304 1 21 0 0 0 chr9 18766769 18766790 -99095837 + AT_rich Low_complexity Low_complexity 1 21 0 2111 176 100 26 chr9 18766872 18767486 -99095141 - MER39 LTR ERV1 0 707 2 21 89 0 0 chr9 18767573 18767629 -99094998 + AT_rich Low_complexity Low_complexity 1 56 0 183 184 0 0 chr9 18767715 18767753 -99094874 + (TAA)n Simple_repeat Simple_repeat 2 39 0 384 248 141 34 chr9 18767794 18767943 -99094684 - MIR SINE MIR -72 190 26 1067 216 15 0 chr9 18768014 18768218 -99094409 + AluJb SINE Alu 83 289 -23 1603 180 68 3 chr9 18768923 18769262 -99093365 - MLT1A1 LTR MaLR 0 365 5 4248 78 2 0 chr9 18771756 18772309 -99090318 + MER41A LTR ERV1 1 554 0 806 229 6 0 chr9 18772575 18772750 -99089877 + MER5B DNA MER1_type 3 178 0 3872 101 4 7 chr9 18773128 18773684 -99088943 - MER41A LTR ERV1 0 554 1 22 35 0 0 chr9 18773973 18774002 -99088625 + AT_rich Low_complexity Low_complexity 1 29 0 621 183 86 34 chr9 18774177 18774352 -99088275 - LTR45B LTR ERV1 0 489 306 2178 166 73 58 chr9 18774727 18775274 -99087353 + MER34B LTR ERV1 11 565 0 1011 236 101 42 chr9 18775610 18776069 -99086558 + MER34 LTR ERV1 1 707 0 2185 110 0 3 chr9 18776083 18776383 -99086244 - AluSg SINE Alu -11 299 1 778 295 70 4 chr9 18776401 18776645 -99085982 + MIR SINE MIR 3 262 0 1502 203 7 14 chr9 18777323 18777619 -99085008 - AluJo SINE Alu -18 294 1 229 281 55 0 chr9 18777788 18777934 -99084693 + L1M4 LINE L1 5175 5328 -818 982 262 70 61 chr9 18778483 18778910 -99083717 + MLT2B1 LTR ERVL 90 520 0 767 281 42 121 chr9 18779140 18779620 -99083007 + ERVL LTR ERVL 4078 4519 -1245 2060 148 0 0 chr9 18779725 18780022 -99082605 - AluSx SINE Alu -15 297 1 590 344 56 5 chr9 18780033 18780523 -99082104 + ERVL LTR ERVL 4536 5074 -690 667 291 184 14 chr9 18780570 18780685 -99081942 + L2 LINE L2 1730 1824 -1490 2223 114 0 0 chr9 18780685 18780984 -99081643 - AluSx SINE Alu -13 299 1 667 291 184 14 chr9 18780984 18781226 -99081401 + L2 LINE L2 1824 2148 -1166 1866 161 60 52 chr9 18781228 18781613 -99081014 - MSTD LTR MaLR 0 396 9 219 313 27 36 chr9 18781614 18781726 -99080901 + L2 LINE L2 2165 2275 -1039 1304 113 72 0 chr9 18781740 18781935 -99080692 - AluSp SINE Alu -18 295 87 959 308 90 13 chr9 18781935 18782312 -99080315 + L2 LINE L2 2266 2671 -643 457 300 128 64 chr9 18782314 18782737 -99079890 + L2 LINE L2 2864 3313 0 278 351 130 33 chr9 18783043 18783342 -99079285 + L3 LINE CR1 64 391 -1186 460 313 150 55 chr9 18783370 18783790 -99078837 + L3 LINE CR1 676 1165 -412 2455 74 0 10 chr9 18783790 18784099 -99078528 + AluSx SINE Alu 1 306 -6 460 313 150 55 chr9 18784099 18784244 -99078383 + L3 LINE CR1 1165 1295 -282 419 246 67 101 chr9 18784250 18784466 -99078161 + L2 LINE L2 3055 3262 -51 2388 88 0 0 chr9 18784466 18784761 -99077866 + AluY SINE Alu 1 295 -16 419 246 67 101 chr9 18784761 18784812 -99077815 + L2 LINE L2 3262 3313 0 360 361 100 36 chr9 18784786 18785066 -99077561 + L3 LINE CR1 1279 1576 -1 * 694 299 94 20 chr9 18786138 18787012 -99075615 - L1ME LINE L1 -652 5518 4578 3704 230 73 47 chr9 18787013 18787462 -99075165 + L1MD2 LINE L1 95 531 -6009 1903 162 6 49 chr9 18787462 18787808 -99074819 + MER1B DNA MER1_type 3 333 -4 3704 230 73 47 chr9 18787808 18788376 -99074251 + L1MD2 LINE L1 531 1152 -5388 2024 133 35 41 chr9 18788376 18788744 -99073883 + MER47A DNA MER2_type 1 366 0 3704 230 73 47 chr9 18788744 18788939 -99073688 + L1MD2 LINE L1 1152 1340 -5200 231 220 20 0 chr9 18788975 18789025 -99073602 - LTR52 LTR ERVL -40 381 331 2223 217 77 10 chr9 18789038 18790005 -99072622 + L1MD2 LINE L1 5201 6236 -517 244 267 112 25 chr9 18790483 18790644 -99071983 + MARNA DNA Mariner 386 560 -26 1883 162 14 0 chr9 18790754 18791050 -99071577 + AluSx SINE Alu 1 300 -12 511 148 11 0 chr9 18791526 18791614 -99071013 - FLAM_C SINE Alu -18 125 37 205 130 0 56 chr9 18793217 18793271 -99069356 + (TTTTC)n Simple_repeat Simple_repeat 5 55 0 21 36 0 0 chr9 18794338 18794366 -99068261 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr9 18795207 18795230 -99067397 + AT_rich Low_complexity Low_complexity 1 23 0 1847 133 0 0 chr9 18795624 18795888 -99066739 - AluSx SINE Alu -14 298 35 9282 195 95 11 chr9 18795889 18799815 -99062812 - L1 LINE L1 -2611 4954 13 988 218 148 45 chr9 18800327 18800685 -99061942 + MSTD LTR MaLR 1 395 -1 1267 233 53 28 chr9 18800885 18801246 -99061381 + MLT1A2 LTR MaLR 1 370 -4 1729 207 115 28 chr9 18801248 18801819 -99060808 + MLT1A2-int LTR MaLR 1 738 -633 353 200 50 0 chr9 18801935 18802015 -99060612 + MLT1A2-int LTR MaLR 686 769 -966 204 204 37 0 chr9 18802226 18802280 -99060347 + (TA)n Simple_repeat Simple_repeat 1 56 0 386 278 70 70 chr9 18802580 18802807 -99059820 - L1MEd LINE L1 -5555 564 338 464 333 90 27 chr9 18803566 18803866 -99058761 - L2 LINE L2 0 3313 2995 573 208 32 8 chr9 18804021 18804146 -99058481 - MIR SINE MIR -3 259 132 203 381 92 12 chr9 18804308 18804481 -99058146 - MIR SINE MIR -70 192 6 36 23 0 0 chr9 18804611 18804654 -99057973 + AT_rich Low_complexity Low_complexity 1 43 0 299 340 43 14 chr9 18805333 18805474 -99057153 - MIR SINE MIR -109 153 9 29 28 0 0 chr9 18805538 18805574 -99057053 + AT_rich Low_complexity Low_complexity 1 36 0 5683 157 22 8 chr9 18806124 18807420 -99055207 - L1MA4 LINE L1 -9 6291 4982 247 219 106 98 chr9 18808025 18808290 -99054337 + L1MEd LINE L1 895 1161 -4958 313 268 41 24 chr9 18808304 18808427 -99054200 + HAL1 LINE L1 1483 1607 -900 2276 112 0 3 chr9 18808445 18808750 -99053877 + AluSx SINE Alu 1 304 -8 238 315 0 0 chr9 18809245 18809337 -99053290 + A-rich Low_complexity Low_complexity 1 92 0 2326 82 0 3 chr9 18809421 18809712 -99052915 - AluSx SINE Alu -22 290 1 634 149 0 0 chr9 18809743 18809850 -99052777 - AluJo SINE Alu -1 311 205 * 805 214 13 19 chr9 18809848 18810007 -99052620 - AluJo SINE Alu -154 158 1 406 282 29 17 chr9 18810009 18810183 -99052444 - L1MDa LINE L1 -2185 4355 4180 * 1541 248 75 11 chr9 18810176 18810838 -99051789 - L1MDa LINE L1 -2792 3748 3044 602 204 125 79 chr9 18810913 18811129 -99051498 - L1MDa LINE L1 -4618 1922 1697 2102 130 0 7 chr9 18811688 18811989 -99050638 - AluSq SINE Alu -14 299 1 232 266 16 0 chr9 18813923 18813987 -99048640 + (TATATG)n Simple_repeat Simple_repeat 1 65 0 691 271 6 12 chr9 18814182 18814352 -99048275 + MER5B DNA MER1_type 3 171 -7 303 305 80 53 chr9 18814607 18814758 -99047869 + L1MEd LINE L1 3 157 -5962 1271 241 75 0 chr9 18814799 18815119 -99047508 - L2 LINE L2 -1001 2313 1970 185 198 9 135 chr9 18815155 18815266 -99047361 - L2 LINE L2 -1466 1848 1752 2772 229 53 22 chr9 18815435 18815788 -99046839 + L1MB8 LINE L1 2731 3072 -3106 1163 218 145 15 chr9 18815788 18816119 -99046508 + MLT1A2 LTR MaLR 1 374 0 2772 229 53 22 chr9 18816119 18816418 -99046209 + L1MB8 LINE L1 3072 3360 -2818 2266 67 0 51 chr9 18816418 18816732 -99045895 + AluY SINE Alu 1 298 -13 2772 229 53 22 chr9 18816732 18817168 -99045459 + L1MB8 LINE L1 3360 6112 -66 2705 240 72 22 chr9 18817199 18818530 -99044097 + L1MB5 LINE L1 2848 4294 -3271 2134 122 3 3 chr9 18818530 18818825 -99043802 - AluSx SINE Alu -17 295 1 2705 240 72 22 chr9 18818825 18818966 -99043661 + L1MB5 LINE L1 4294 4426 -3139 410 79 79 0 chr9 18818966 18819029 -99043598 + L1MB1 LINE L1 6101 6168 0 698 279 52 84 chr9 18819033 18819531 -99043096 + L1MB5 LINE L1 5333 5814 -1751 201 313 44 50 chr9 18819952 18820134 -99042493 - L2 LINE L2 -1217 2097 1917 249 227 15 0 chr9 18820146 18820212 -99042415 - MLT1K LTR MaLR 0 588 522 576 266 107 33 chr9 18820451 18820722 -99041905 - MER20B DNA MER1_type -492 291 1 8155 56 1 0 chr9 18821486 18822451 -99040176 + LTR5 LTR ERVK 1 966 -3 497 233 123 0 chr9 18824204 18824367 -99038260 + L1MB5 LINE L1 6516 6698 -867 958 124 0 28 chr9 18824369 18824514 -99038113 + AluSx SINE Alu 1 141 -172 4222 126 181 102 chr9 18824517 18825940 -99036687 - pTR5 LTR ERV1 0 2438 743 1074 127 0 18 chr9 18825940 18826106 -99036521 + AluSx SINE Alu 147 309 -3 1110 175 40 58 chr9 18826112 18826437 -99036190 + L1MB5 LINE L1 6708 7026 -567 816 172 0 0 chr9 18826438 18826572 -99036055 + AluJo SINE Alu 1 134 -178 2907 170 11 17 chr9 18826572 18827114 -99035513 + L1MB5 LINE L1 7013 7551 -42 252 0 0 0 chr9 18827276 18827304 -99035323 + (TA)n Simple_repeat Simple_repeat 2 29 0 1245 340 63 18 chr9 18827849 18828625 -99034002 - L2 LINE L2 -541 2773 1963 1021 238 103 7 chr9 18828845 18829126 -99033501 + MLT1A1 LTR MaLR 41 348 -17 201 133 0 0 chr9 18829864 18829894 -99032733 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 21 95 0 0 chr9 18829955 18830018 -99032609 + AT_rich Low_complexity Low_complexity 1 63 0 1212 251 29 47 chr9 18830413 18830799 -99031828 + L1MDa LINE L1 3 381 -6159 2102 122 3 0 chr9 18830864 18831159 -99031468 + AluSx SINE Alu 1 296 -16 1838 168 0 3 chr9 18831470 18831762 -99030865 + AluJo SINE Alu 1 291 -21 1487 236 141 34 chr9 18831964 18832553 -99030074 - MLT1E1 LTR MaLR -2 652 1 24 0 0 0 chr9 18832653 18832677 -99029950 + AT_rich Low_complexity Low_complexity 1 24 0 273 299 198 17 chr9 18833099 18833276 -99029351 - MIR SINE MIR -18 244 36 256 355 150 0 chr9 18834349 18834569 -99028058 - L2 LINE L2 -508 2806 2554 36 53 0 0 chr9 18835929 18835986 -99026641 + AT_rich Low_complexity Low_complexity 1 57 0 1448 54 0 0 chr9 18838099 18838284 -99024343 - L1PA3 LINE L1 -102 6053 5869 877 37 0 0 chr9 18838284 18838387 -99024240 + L1PA2 LINE L1 6049 6155 0 2170 155 10 30 chr9 18842690 18843083 -99019544 - MLT1B LTR MaLR -5 385 1 666 230 15 7 chr9 18843274 18843409 -99019218 - MIR SINE MIR -123 139 4 181 313 20 81 chr9 18843573 18843672 -99018955 + MIR SINE MIR 25 117 -91 221 175 25 50 chr9 18844233 18844313 -99018314 + (TATAA)n Simple_repeat Simple_repeat 1 78 0 205 379 73 24 chr9 18844875 18845075 -99017552 - MIR SINE MIR -57 205 2 677 248 140 84 chr9 18845199 18845650 -99016977 - MLT1H LTR MaLR -2 547 72 26 30 0 0 chr9 18845896 18845929 -99016698 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr9 18846008 18846036 -99016591 + AT_rich Low_complexity Low_complexity 1 28 0 526 263 25 38 chr9 18846884 18847044 -99015583 + MIR SINE MIR 104 261 -1 225 94 0 0 chr9 18847056 18847088 -99015539 + (CAG)n Simple_repeat Simple_repeat 2 33 0 21 71 0 0 chr9 18847373 18847415 -99015212 + AT_rich Low_complexity Low_complexity 1 42 0 22 70 0 0 chr9 18848646 18848689 -99013938 + AT_rich Low_complexity Low_complexity 1 43 0 4177 119 5 0 chr9 18850900 18851524 -99011103 + L1PA15 LINE L1 5527 6153 -12 192 403 89 8 chr9 18902380 18902504 -98960123 + L3b LINE CR1 1374 1507 -76 23 33 0 0 chr9 18904892 18904922 -98957705 + AT_rich Low_complexity Low_complexity 1 30 0 397 289 198 17 chr9 18908333 18908682 -98953945 + L2 LINE L2 2807 3218 -95 2836 198 69 19 chr9 18908682 18909360 -98953267 + Cheshire DNA MER1_type 1 712 -1708 2138 205 36 26 chr9 18909413 18909911 -98952716 + MLT1D LTR MaLR 1 503 -2 268 211 0 0 chr9 18909912 18909969 -98952658 - L1M4 LINE L1 -2389 3757 3701 2964 247 95 24 chr9 18909993 18911352 -98951275 + L1M4 LINE L1 3844 5298 -848 767 161 39 0 chr9 18911796 18911951 -98950676 - L1MA6 LINE L1 -4 6296 6136 2837 192 9 4 chr9 18911953 18912505 -98950122 - L1PA16 LINE L1 -16 6150 5596 1783 240 64 30 chr9 18913187 18913779 -98948848 - L1MD2 LINE L1 -2 6357 5746 8821 144 16 21 chr9 18913798 18915328 -98947299 + ERVL LTR ERVL 3905 5426 -338 1884 188 53 5 chr9 18915357 18915750 -98946877 + MLT2D LTR ERVL 3 414 0 1194 241 21 10 chr9 18915750 18916041 -98946586 - L1MD2 LINE L1 -626 5733 5440 676 214 204 67 chr9 18916278 18916577 -98946050 - MLT1E LTR MaLR -8 585 246 342 98 0 0 chr9 18916601 18916652 -98945975 + (CA)n Simple_repeat Simple_repeat 1 51 0 324 267 0 0 chr9 18916654 18916729 -98945898 - MLT1E LTR MaLR -467 75 1 1466 156 103 6 chr9 18917289 18917609 -98945018 + L1PA16 LINE L1 5811 6161 -5 2239 76 20 10 chr9 18917764 18918065 -98944562 - AluY SINE Alu -7 304 1 473 292 129 45 chr9 18918140 18918367 -98944260 + L1M4 LINE L1 2866 3072 -3074 1854 160 0 25 chr9 18918367 18918686 -98943941 + AluJb SINE Alu 2 312 0 473 292 129 45 chr9 18918686 18918862 -98943765 + L1M4 LINE L1 3072 3303 -2843 459 333 78 48 chr9 18918905 18918978 -98943649 + L1M4 LINE L1 3382 3451 -2695 1776 183 0 7 chr9 18918978 18919278 -98943349 + AluJo SINE Alu 1 298 -14 459 333 78 48 chr9 18919278 18919625 -98943002 + L1M4 LINE L1 3451 3815 -2331 307 308 34 8 chr9 18919868 18919985 -98942642 + MLT1J LTR MaLR 305 424 -87 2784 286 89 7 chr9 18920047 18921193 -98941434 + L2 LINE L2 1896 3129 -184 1621 224 43 18 chr9 18921258 18921695 -98940932 - MER39 LTR ERV1 0 707 260 305 160 26 24 chr9 18921683 18921772 -98940855 - MER39 LTR ERV1 -557 87 1 * 387 235 0 59 chr9 18921791 18921893 -98940734 + L2 LINE L2 3218 3313 0 1160 220 33 84 chr9 18921988 18922062 -98940565 + MLT1C LTR MaLR 6 82 -385 2369 64 6 19 chr9 18922062 18922376 -98940251 + AluY SINE Alu 1 310 -1 1160 220 33 84 chr9 18922376 18922788 -98939839 + MLT1C LTR MaLR 82 467 0 763 133 21 183 chr9 18922873 18922983 -98939644 - MER106A DNA MER1_type -2 234 194 2330 104 0 19 chr9 18922983 18923299 -98939328 - AluSg SINE Alu 0 310 1 763 133 21 183 chr9 18923299 18923467 -98939160 - MER106A DNA MER1_type -42 194 1 734 252 67 52 chr9 18923555 18923884 -98938743 + MLT1I LTR MaLR 28 361 -48 1456 158 91 8 chr9 18923893 18924038 -98938589 - AluJb SINE Alu -25 287 155 198 0 0 0 chr9 18924038 18924060 -98938567 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1456 158 91 8 chr9 18924060 18924179 -98938448 - AluJb SINE Alu -157 155 1 348 259 29 41 chr9 18925208 18925378 -98937249 - MLT2E LTR ERVL -14 614 447 384 77 0 0 chr9 18926196 18926248 -98936379 + (GA)n Simple_repeat Simple_repeat 2 53 0 416 250 79 29 chr9 18927050 18927190 -98935437 + MIR SINE MIR 110 256 -6 241 301 159 0 chr9 18927295 18927408 -98935219 - MIR SINE MIR -130 132 2 2078 119 3 3 chr9 18928195 18928489 -98934138 - AluSx SINE Alu -18 294 1 230 204 0 0 chr9 18929069 18929113 -98933514 - MLT2B1 LTR ERVL -4 410 367 1039 231 61 48 chr9 18929170 18929569 -98933058 - MLT2B1 LTR ERVL -58 406 1 917 183 122 5 chr9 18929801 18930014 -98932613 + MER90 LTR ERV1 3 240 -374 340 182 0 15 chr9 18930104 18930170 -98932457 + MER90 LTR ERV1 233 297 -317 2573 68 0 0 chr9 18930878 18931187 -98931440 - AluY SINE Alu -2 309 1 283 93 0 0 chr9 18931803 18931846 -98930781 - Alu SINE Alu -10 290 248 2040 114 7 17 chr9 18931846 18932135 -98930492 - AluSx SINE Alu -26 286 1 4350 175 31 48 chr9 18932380 18933619 -98929008 + L1MC3 LINE L1 6336 7655 -130 466 207 300 0 chr9 18933634 18933784 -98928843 + MER90 LTR ERV1 405 599 -15 2410 84 0 54 chr9 18934353 18934723 -98927904 - L1PA8 LINE L1 0 6172 5823 482 229 207 43 chr9 18935017 18935205 -98927422 + MIR SINE MIR 2 220 -42 208 343 38 48 chr9 18935350 18935455 -98927172 + MIR SINE MIR 34 137 -71 2141 108 0 7 chr9 18935728 18936024 -98926603 - AluSg SINE Alu -16 294 1 27 62 0 0 chr9 18936829 18936877 -98925750 + AT_rich Low_complexity Low_complexity 1 48 0 1633 113 4 4 chr9 18937127 18937358 -98925269 - AluSg/x SINE Alu -1 309 79 613 306 44 6 chr9 18938023 18938203 -98924424 - MIR SINE MIR -68 194 8 189 0 0 0 chr9 18938433 18938454 -98924173 + (A)n Simple_repeat Simple_repeat 1 21 0 370 312 196 0 chr9 18938872 18939061 -98923566 - MIR SINE MIR -28 234 9 338 347 42 19 chr9 18939713 18939872 -98922755 + MIR SINE MIR 16 174 -73 253 316 61 9 chr9 18939996 18940110 -98922517 + L2 LINE L2 3153 3272 0 3107 160 12 60 chr9 18940845 18941490 -98921137 - L1MB8 LINE L1 -11 6167 5554 238 375 55 0 chr9 18942462 18942590 -98920037 - MIR3 SINE MIR -71 137 3 295 372 67 6 chr9 18942757 18942937 -98919690 - MER91A DNA MER1_type -3 193 3 229 209 0 0 chr9 18943117 18943160 -98919467 + (CA)n Simple_repeat Simple_repeat 1 43 0 434 250 64 76 chr9 18943325 18943497 -98919130 - MER5B DNA MER1_type -1 177 8 1581 163 101 91 chr9 18943721 18943941 -98918686 - MLT1B LTR MaLR 0 390 163 2001 156 7 0 chr9 18943941 18944249 -98918378 - AluSx SINE Alu -2 310 1 1581 163 101 91 chr9 18944249 18944414 -98918213 - MLT1B LTR MaLR -227 163 1 43521 35 23 1 chr9 18944514 18950533 -98912094 + L1PA3 LINE L1 3 6153 -2 694 220 19 125 chr9 18951075 18951263 -98911364 + MIR SINE MIR 27 181 -81 14106 124 13 6 chr9 18951263 18954094 -98908533 + L1PA10 LINE L1 3322 6157 -11 694 220 19 125 chr9 18954094 18954169 -98908458 + MIR SINE MIR 181 262 0 321 252 187 19 chr9 18954600 18954707 -98907920 - L2 LINE L2 -2 3270 3146 1975 194 19 6 chr9 18955010 18955370 -98907257 - MLT1A1 LTR MaLR 0 365 1 2337 147 124 15 chr9 18955442 18955844 -98906783 + MLT2B2 LTR ERVL 1 446 -69 237 196 0 0 chr9 18955853 18955904 -98906723 + (TG)n Simple_repeat Simple_repeat 1 51 0 465 303 40 58 chr9 18955981 18956258 -98906369 + L2 LINE L2 1662 1933 -1381 2150 242 123 26 chr9 18956262 18956840 -98905787 - L1ME3A LINE L1 0 6170 5495 2540 62 0 3 chr9 18956840 18957149 -98905478 + AluY SINE Alu 1 308 -3 2150 242 123 26 chr9 18957149 18957350 -98905277 - L1ME3A LINE L1 -675 5495 5315 610 126 44 44 chr9 18957342 18957477 -98905150 - L1MA10 LINE L1 -2 6332 6198 * 991 185 18 44 chr9 18957466 18957693 -98904934 - L1MA10 LINE L1 -88 6246 6026 1495 273 70 35 chr9 18957834 18958716 -98903911 - L1ME3A LINE L1 -1621 4525 3613 980 183 0 6 chr9 18958743 18958912 -98903715 - AluJb SINE Alu -14 298 131 701 149 13 18 chr9 18958915 18959137 -98903490 + CT-rich Low_complexity Low_complexity 1 220 0 795 153 0 8 chr9 18959137 18959430 -98903197 - FLAM_C SINE Alu 0 292 1 21 0 0 0 chr9 18959435 18959456 -98903171 + AT_rich Low_complexity Low_complexity 1 21 0 266 322 91 0 chr9 18959458 18959579 -98903048 - L1ME3A LINE L1 -2560 3586 3455 242 313 61 0 chr9 18959610 18959709 -98902918 - L2 LINE L2 -588 2726 2622 189 213 0 98 chr9 18960201 18960262 -98902365 + L3b LINE CR1 1276 1330 -253 270 81 0 0 chr9 18961289 18961326 -98901301 + (A)n Simple_repeat Simple_repeat 1 37 0 366 344 27 6 chr9 18961339 18961522 -98901105 - MER5A DNA MER1_type -2 187 1 458 239 42 7 chr9 18961943 18962085 -98900542 + Charlie8 DNA MER1_type 83 229 -2188 540 182 27 9 chr9 18962156 18962266 -98900361 + MER69A DNA AcHobo 66 177 0 255 228 0 0 chr9 18962394 18962451 -98900176 + Charlie8 DNA MER1_type 404 460 -1957 21 0 0 0 chr9 18963637 18963658 -98898969 + AT_rich Low_complexity Low_complexity 1 21 0 1262 246 116 37 chr9 18963759 18964408 -98898219 + L1M4 LINE L1 3660 4359 -1787 820 283 79 46 chr9 18964411 18965075 -98897552 + L1ME LINE L1 1407 2137 -4444 302 326 58 22 chr9 18965118 18965566 -98897061 + L1ME LINE L1 2259 2722 -3999 1839 248 63 94 chr9 18965581 18966331 -98896296 + L1ME LINE L1 3093 3891 -2649 548 163 0 0 chr9 18966331 18966417 -98896210 + AluS SINE Alu 220 305 -7 1839 248 63 94 chr9 18966417 18966622 -98896005 + L1ME LINE L1 3891 4101 -2439 1246 197 7 30 chr9 18966641 18966910 -98895717 - AluJo SINE Alu -21 291 29 1453 270 38 44 chr9 18966948 18967536 -98895091 + L1ME LINE L1 5592 6171 -393 2569 46 0 3 chr9 18967606 18967910 -98894717 + AluY SINE Alu 1 303 -8 373 272 25 62 chr9 18968273 18968435 -98894192 + MIR SINE MIR 52 207 -55 1672 177 15 103 chr9 18968502 18968898 -98893729 + MLT1A1 LTR MaLR 5 365 0 755 299 69 14 chr9 18970154 18970588 -98892039 - L1ME4a LINE L1 -3 6118 5661 * 3862 189 13 14 chr9 18970586 18971363 -98891264 - L1MB8 LINE L1 0 6178 5403 300 361 66 0 chr9 18971375 18971541 -98891086 - L1ME4a LINE L1 -460 5661 5485 313 281 58 53 chr9 18971583 18971754 -98890873 - L1ME4a LINE L1 -756 5390 5219 2359 46 63 0 chr9 18971802 18972086 -98890541 - AluY SINE Alu -9 302 1 1950 72 4 16 chr9 18973206 18973456 -98889171 - L1PA5 LINE L1 0 6154 5908 2423 197 19 17 chr9 18973485 18973951 -98888676 + MLT1C LTR MaLR 1 467 0 211 296 159 0 chr9 18973961 18974049 -98888578 + MIR SINE MIR 89 190 -72 952 214 5 11 chr9 18974151 18974338 -98888289 - MER5A DNA MER1_type 0 189 4 303 28 0 0 chr9 18974755 18974791 -98887836 + (TA)n Simple_repeat Simple_repeat 1 36 0 7466 63 0 16 chr9 18974793 18975849 -98886778 - L1PA7 LINE L1 -11 6143 5093 466 113 0 0 chr9 18975849 18975911 -98886716 - AluSg/x SINE Alu -36 273 212 439 264 100 106 chr9 18976148 18976489 -98886138 - L2 LINE L2 0 3272 2934 2189 113 0 0 chr9 18977632 18977924 -98884703 + AluSg SINE Alu 1 292 -18 1987 123 35 3 chr9 18978182 18978466 -98884161 - AluSx SINE Alu -19 293 1 228 248 80 18 chr9 18978993 18979106 -98883521 - LTR67 LTR ERVL -10 547 428 234 62 0 0 chr9 18980009 18980041 -98882586 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 244 241 52 0 chr9 18980116 18980174 -98882453 + MIR3 SINE MIR 94 154 -54 2383 108 30 49 chr9 18980998 18981194 -98881433 - THE1B LTR MaLR 0 364 177 5636 18 5 0 chr9 18981194 18981803 -98880824 - L1PA3 LINE L1 0 6155 5544 2383 108 30 49 chr9 18981803 18981975 -98880652 - THE1B LTR MaLR -187 177 3 710 271 143 15 chr9 18982440 18982768 -98879859 - MLT1I LTR MaLR -39 370 1 388 275 94 110 chr9 18983707 18984558 -98878069 + L1M2 LINE L1 587 1362 -5487 292 237 248 25 chr9 18985860 18986058 -98876569 + MIR SINE MIR 18 259 -3 1853 138 65 0 chr9 18986641 18986932 -98875695 - AluSq SINE Alu -3 310 1 2470 184 15 32 chr9 18987591 18988064 -98874563 - MLT1C LTR MaLR -2 465 1 1727 216 33 25 chr9 18988210 18988572 -98874055 + MLT1A1 LTR MaLR 1 365 0 22 0 0 0 chr9 18989038 18989060 -98873567 + AT_rich Low_complexity Low_complexity 1 22 0 1954 132 0 7 chr9 18989175 18989475 -98873152 + AluSx SINE Alu 5 302 0 1057 215 31 110 chr9 18990436 18990855 -98871772 + MER88 LTR ERVL 79 464 0 23 78 0 0 chr9 18991317 18991368 -98871259 + AT_rich Low_complexity Low_complexity 1 51 0 2960 86 8 5 chr9 18991441 18991815 -98870812 - THE1C LTR MaLR 0 375 1 1875 138 25 0 chr9 18991877 18992177 -98870450 + AluSx SINE Alu 1 307 0 2027 130 3 25 chr9 18992548 18992864 -98869763 + AluSx SINE Alu 1 309 -3 345 206 246 40 chr9 18993086 18993212 -98869415 - MLT1J1 LTR MaLR -145 301 150 2056 220 85 5 chr9 18993347 18993793 -98868834 + MLT1E2 LTR MaLR 137 618 -8 383 207 41 90 chr9 18993812 18993957 -98868670 - MLT1J1 LTR MaLR -306 140 3 203 326 10 20 chr9 18993982 18994080 -98868547 + (TATATG)n Simple_repeat Simple_repeat 4 100 0 795 194 8 0 chr9 18994152 18994281 -98868346 - FRAM SINE Alu -46 130 1 27 29 0 0 chr9 18994290 18994324 -98868303 + AT_rich Low_complexity Low_complexity 1 34 0 1574 154 70 7 chr9 18995725 18996010 -98866617 - AluJb SINE Alu -9 303 1 2791 151 75 0 chr9 18996905 18997375 -98865252 - MLT2B2 LTR ERVL -10 505 1 467 263 129 0 chr9 18997443 18997637 -98864990 + MER113 DNA MER1_type? 225 443 -78 4567 170 46 30 chr9 18997645 18998491 -98864136 + MER21B LTR ERV1 3 862 -1 297 325 115 50 chr9 18998963 18999391 -98863236 + L2 LINE L2 2638 3087 -185 1455 89 54 10 chr9 18999410 18999613 -98863014 + L1PA8 LINE L1 5960 6171 -1 222 269 0 0 chr9 18999744 18999796 -98862831 + L2 LINE L2 3262 3313 0 664 141 204 0 chr9 18999997 19000139 -98862488 - MIR SINE MIR -66 196 26 551 285 191 16 chr9 19000309 19000744 -98861883 + L1ME4a LINE L1 5403 5913 -208 2070 114 21 3 chr9 19002194 19002483 -98860144 + AluSx SINE Alu 3 296 -16 442 304 16 0 chr9 19002837 19002962 -98859665 - L2 LINE L2 -10 3262 3136 295 363 52 52 chr9 19003532 19003725 -98858902 + L2 LINE L2 2986 3178 -94 471 252 37 22 chr9 19003745 19003880 -98858747 - MIR SINE MIR -96 166 30 357 344 70 23 chr9 19003915 19004130 -98858497 + L1ME LINE L1 4795 5019 -1127 289 271 152 7 chr9 19004399 19004550 -98858077 + L1ME LINE L1 5561 5733 -388 233 262 56 28 chr9 19006776 19006883 -98855744 - MARNA DNA Mariner -211 375 266 1992 152 131 49 chr9 19008151 19008531 -98854096 + L1MB3 LINE L1 5671 6095 -88 2220 105 3 16 chr9 19008531 19008837 -98853790 + AluSp SINE Alu 1 302 -11 1992 152 131 49 chr9 19008837 19008931 -98853696 + L1MB3 LINE L1 6095 6180 -3 321 247 35 24 chr9 19009041 19009126 -98853501 - MIR3 SINE MIR -29 179 94 606 259 78 33 chr9 19009169 19009412 -98853215 + MIR SINE MIR 9 262 0 1619 181 14 20 chr9 19009930 19010223 -98852404 - AluJo SINE Alu -13 299 9 2179 104 0 0 chr9 19011037 19011340 -98851287 - AluSg SINE Alu 0 306 4 198 261 0 0 chr9 19011376 19011422 -98851205 + MER5B DNA MER1_type 132 177 -1 2276 165 8 3 chr9 19012053 19012428 -98850199 - Tigger3(Golem) DNA MER2_type 0 3029 2653 446 196 43 22 chr9 19012448 19012540 -98850087 - Tigger3(Golem) DNA MER2_type -2935 94 1 189 291 18 18 chr9 19012860 19012915 -98849712 - L2 LINE L2 -19 3253 3199 2176 78 4 0 chr9 19013093 19013364 -98849263 - AluY SINE Alu -5 306 35 439 259 89 15 chr9 19014092 19014227 -98848400 - MIR SINE MIR -76 186 42 317 255 163 0 chr9 19014364 19014517 -98848110 - MER102a DNA MER1_type 0 330 153 223 325 36 0 chr9 19015041 19015124 -98847503 + MIR SINE MIR 46 131 -131 210 299 76 57 chr9 19016889 19017046 -98845581 - MIR SINE MIR -45 217 58 293 248 239 9 chr9 19017336 19017449 -98845178 + MER5A DNA MER1_type 45 183 -6 1381 161 54 91 chr9 19017610 19017983 -98844644 - L1MB8 LINE L1 -13 6165 5807 252 0 0 0 chr9 19019248 19019276 -98843351 + (A)n Simple_repeat Simple_repeat 1 28 0 382 249 69 90 chr9 19019515 19019704 -98842923 - MIR SINE MIR -8 254 70 2369 81 3 13 chr9 19020327 19020637 -98841990 + AluY SINE Alu 1 307 -4 657 265 48 54 chr9 19021942 19022236 -98840391 - L1MC4a LINE L1 -1838 5970 5679 301 253 36 0 chr9 19022385 19022468 -98840159 - MER103 DNA DNA -2 164 79 1189 189 22 40 chr9 19023060 19023282 -98839345 + MER20 DNA MER1_type 1 218 -1 501 300 75 6 chr9 19023419 19023579 -98839048 + MER46C DNA MER2_type 7 177 -161 216 0 0 0 chr9 19023746 19023770 -98838857 + (TG)n Simple_repeat Simple_repeat 1 24 0 519 244 210 6 chr9 19023984 19024160 -98838467 - MIR SINE MIR -6 256 45 420 222 42 103 chr9 19024228 19024352 -98838275 - L1ME4a LINE L1 -226 5895 5794 2272 104 3 0 chr9 19024352 19024650 -98837977 + AluSq SINE Alu 5 303 -10 420 222 42 103 chr9 19024650 19024786 -98837841 - L1ME4a LINE L1 -327 5794 5651 24 53 0 0 chr9 19025019 19025057 -98837570 + AT_rich Low_complexity Low_complexity 1 38 0 340 286 0 0 chr9 19025210 19025287 -98837340 - L2 LINE L2 -7 3265 3189 713 265 22 0 chr9 19025298 19025483 -98837144 - MIR SINE MIR 0 262 74 259 267 63 91 chr9 19025511 19025796 -98836831 - L2 LINE L2 -665 2649 2373 338 315 63 31 chr9 19026039 19026261 -98836366 - L1ME4a LINE L1 -274 5847 5619 692 119 8 0 chr9 19027886 19028004 -98834623 + (TTTCC)n Simple_repeat Simple_repeat 1 119 0 291 157 0 0 chr9 19027992 19028043 -98834584 + C-rich Low_complexity Low_complexity 1 51 0 * 181 271 21 104 chr9 19028406 19028502 -98834125 - L2 LINE L2 -1237 2077 1990 2317 244 113 51 chr9 19028548 19028658 -98833969 - L1MC4 LINE L1 0 8042 7940 288 0 0 0 chr9 19028658 19028690 -98833937 + (CA)n Simple_repeat Simple_repeat 2 33 0 2317 244 113 51 chr9 19028690 19029755 -98832872 - L1MC4 LINE L1 -102 7940 6794 278 260 47 123 chr9 19030397 19030632 -98831995 - MIR SINE MIR -25 237 21 402 21 0 0 chr9 19033364 19033411 -98829216 + (TG)n Simple_repeat Simple_repeat 1 47 0 410 335 35 17 chr9 19034071 19034244 -98828383 + MIR3 SINE MIR 31 206 -2 203 356 75 40 chr9 19034868 19035042 -98827585 + MER5A DNA MER1_type 10 189 0 228 65 0 0 chr9 19036083 19036114 -98826513 - MADE1 DNA Mariner -49 31 1 230 311 30 37 chr9 19037439 19037603 -98825024 - L1ME LINE L1 -343 5778 5616 289 327 181 0 chr9 19038984 19039183 -98823444 + MIR SINE MIR 2 236 -26 184 288 55 27 chr9 19039494 19039567 -98823060 + MIR SINE MIR 44 118 -90 3255 91 21 2 chr9 19039933 19040363 -98822264 - L1PA12 LINE L1 -2 6166 5729 454 302 29 7 chr9 19042521 19042660 -98819967 + MIR SINE MIR 11 152 -110 2665 29 0 3 chr9 19042827 19043135 -98819492 + AluY SINE Alu 1 307 -4 601 318 69 31 chr9 19043266 19043555 -98819072 - L2 LINE L2 -14 3299 3000 2320 245 107 20 chr9 19044088 19045075 -98817552 + L1ME1 LINE L1 5064 6134 -32 338 179 0 0 chr9 19046327 19046394 -98816233 + L1MB8 LINE L1 5804 5870 -308 7318 106 16 22 chr9 19046397 19052077 -98810550 - L1PA7 LINE L1 -4 6465 718 255 332 145 37 chr9 19052249 19052364 -98810263 - MIR SINE MIR 0 262 161 228 35 0 0 chr9 19052364 19052393 -98810234 + (TC)n Simple_repeat Simple_repeat 2 30 0 255 332 145 37 chr9 19052393 19052491 -98810136 - MIR SINE MIR -101 161 26 299 209 174 0 chr9 19052501 19052587 -98810040 + MIR SINE MIR 117 217 -45 225 340 29 10 chr9 19052611 19052714 -98809913 + MIR SINE MIR 139 243 -19 2505 140 26 28 chr9 19052768 19053197 -98809430 + Tigger2a DNA MER2_type 1 428 -6 25 0 0 0 chr9 19053549 19053574 -98809053 + AT_rich Low_complexity Low_complexity 1 25 0 1367 168 134 11 chr9 19054054 19054316 -98808311 - AluSg SINE Alu -13 297 4 2176 89 45 0 chr9 19055318 19055609 -98807018 - AluSg SINE Alu -6 304 1 194 208 19 0 chr9 19055937 19055990 -98806637 + (TG)n Simple_repeat Simple_repeat 1 54 0 308 293 99 36 chr9 19056055 19056529 -98806098 - L1M4 LINE L1 -1377 5005 4502 521 234 21 0 chr9 19056553 19056698 -98805929 - L1MEc LINE L1 -4688 1708 1561 484 255 64 69 chr9 19056895 19057471 -98805156 - L1M4 LINE L1 -2887 3495 2923 895 151 14 0 chr9 19057566 19057705 -98804922 + MER46A DNA MER2_type 6 146 -90 234 288 77 30 chr9 19057724 19057957 -98804670 - L1M4 LINE L1 -3571 2811 2568 403 228 78 72 chr9 19058021 19058201 -98804426 - L1M4 LINE L1 -3927 2457 2277 380 276 126 40 chr9 19058209 19058383 -98804244 - HAL1 LINE L1 -1157 1350 1162 455 216 108 32 chr9 19058537 19058686 -98803941 + MSTC LTR MaLR 3 156 -270 26 30 0 0 chr9 19060555 19060588 -98802039 + AT_rich Low_complexity Low_complexity 1 33 0 640 92 0 10 chr9 19061649 19061747 -98800880 + AluY SINE Alu 209 305 -6 204 312 174 37 chr9 19062118 19062227 -98800400 - L2 LINE L2 -28 3244 3121 334 303 86 34 chr9 19062390 19062565 -98800062 + MIR SINE MIR 14 197 -65 597 260 45 0 chr9 19062627 19062781 -98799846 + MIR SINE MIR 76 236 -26 209 206 93 52 chr9 19064848 19064945 -98797682 + MIR SINE MIR 84 184 -78 216 267 57 76 chr9 19064966 19065071 -98797556 + MIR SINE MIR 51 153 -109 457 237 118 24 chr9 19065156 19065325 -98797302 + Charlie8 DNA MER1_type 84 268 -2149 277 393 16 0 chr9 19065567 19065689 -98796938 + MIR3 SINE MIR 64 187 -21 451 311 178 22 chr9 19065733 19065832 -98796795 + L3 LINE CR1 446 528 -1049 2373 106 0 0 chr9 19065832 19066143 -98796484 + AluSx SINE Alu 1 311 -1 451 311 178 22 chr9 19066143 19066458 -98796169 + L3 LINE CR1 528 925 -652 313 331 126 11 chr9 19066715 19066890 -98795737 + MIR SINE MIR 3 197 -65 692 249 63 39 chr9 19066916 19067201 -98795426 - L1M4 LINE L1 -3317 2829 2538 2249 80 20 7 chr9 19067656 19067955 -98794672 - AluSg SINE Alu -7 303 1 25 0 0 0 chr9 19068332 19068357 -98794270 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr9 19068991 19069014 -98793613 + AT_rich Low_complexity Low_complexity 1 23 0 193 333 0 13 chr9 19069386 19069461 -98793166 + MIR SINE MIR 102 175 -87 1479 238 90 38 chr9 19069919 19070453 -98792174 - L1MC4 LINE L1 0 8042 7481 2555 226 125 60 chr9 19070455 19071498 -98791129 - L1MC4a LINE L1 -795 7013 5897 306 0 0 0 chr9 19071498 19071532 -98791095 + (TG)n Simple_repeat Simple_repeat 2 35 0 2555 226 125 60 chr9 19071532 19071557 -98791070 - L1MC4a LINE L1 -1911 5897 5875 1616 225 43 11 chr9 19071591 19072036 -98790591 - L1MC4a LINE L1 -2033 5775 5317 2723 215 103 14 chr9 19072152 19073399 -98789228 - L1MB4 LINE L1 0 6180 4828 1711 200 0 3 chr9 19073605 19073910 -98788717 - AluJo SINE Alu -8 304 1 2927 212 85 23 chr9 19074042 19074737 -98787890 - L1MD2 LINE L1 -1 6358 5613 1391 249 49 73 chr9 19074737 19075364 -98787263 - LTR9 LTR ERV1 0 612 1 2927 212 85 23 chr9 19075364 19075409 -98787218 - L1MD2 LINE L1 -746 5613 5572 928 180 38 11 chr9 19075775 19075958 -98786669 - MER5A DNA MER1_type 0 189 2 1385 136 0 0 chr9 19076370 19076591 -98786036 + L1MA2 LINE L1 6084 6304 0 317 294 37 37 chr9 19077738 19077874 -98784753 + L2 LINE L2 2175 2310 -1004 1834 138 33 16 chr9 19078094 19078398 -98784229 - AluJb SINE Alu -3 309 1 251 119 0 0 chr9 19079154 19079196 -98783431 - MLT1H LTR MaLR -26 541 500 1827 142 4 0 chr9 19079214 19079505 -98783122 - AluSx SINE Alu 0 305 14 990 242 77 79 chr9 19079506 19079998 -98782629 - MLT1H LTR MaLR -48 501 11 2398 76 3 0 chr9 19080617 19080921 -98781706 + AluY SINE Alu 1 305 -6 2195 125 0 0 chr9 19081276 19081579 -98781048 + AluSx SINE Alu 1 303 -9 183 42 0 0 chr9 19082577 19082601 -98780026 + (TA)n Simple_repeat Simple_repeat 1 24 0 21511 39 3 0 chr9 19082601 19086027 -98776600 - L1PA4 LINE L1 -19 6136 2707 5791 89 27 27 chr9 19086450 19087647 -98774980 + L1PA8A LINE L1 4936 6131 0 848 294 119 21 chr9 19087874 19088385 -98774242 + L1MCc LINE L1 24 584 -5839 2293 255 73 32 chr9 19088500 19089806 -98772821 + L1MCc LINE L1 808 2179 -4762 272 143 0 143 chr9 19090029 19090085 -98772542 - MLT2C1 LTR ERVL 0 397 355 1679 199 32 18 chr9 19090131 19090472 -98772155 - MLT2C1 LTR ERVL -51 346 1 2705 22 0 0 chr9 19090499 19090816 -98771811 - L1PA2 LINE L1 -1092 5054 4738 7809 13 5 0 chr9 19090816 19091904 -98770723 + L1PA2 LINE L1 5063 6154 -1 5068 159 29 24 chr9 19093449 19094434 -98768193 + L1MC3 LINE L1 6700 7689 -96 942 297 127 10 chr9 19094479 19094956 -98767671 + L2 LINE L2 2781 3313 0 228 350 49 55 chr9 19095030 19095193 -98767434 + L2 LINE L2 3106 3267 -5 492 262 123 24 chr9 19096906 19097158 -98765469 + L1MC4a LINE L1 5574 5850 -1958 1990 140 7 3 chr9 19097315 19097607 -98765020 + AluSx SINE Alu 1 293 -19 2570 89 20 3 chr9 19097683 19098032 -98764595 - THE1A LTR MaLR 0 355 1 1033 155 107 19 chr9 19099076 19099282 -98763345 - MSTA LTR MaLR 0 428 205 198 0 0 0 chr9 19099816 19099838 -98762789 + (TTTTTA)n Simple_repeat Simple_repeat 2 23 0 274 335 73 34 chr9 19100899 19101078 -98761549 + MIR3 SINE MIR 2 187 -21 2467 109 11 16 chr9 19101362 19101739 -98760888 - THE1C LTR MaLR 0 375 1 2289 104 0 0 chr9 19102176 19102474 -98760153 - AluSg SINE Alu -12 298 1 222 302 71 32 chr9 19103088 19103214 -98759413 + MIR SINE MIR 16 146 -62 2214 109 3 3 chr9 19103827 19104129 -98758498 + AluSc SINE Alu 1 302 -7 285 340 106 11 chr9 19104705 19104970 -98757657 - L1MC/D LINE L1 -2000 5808 5519 308 102 68 0 chr9 19105787 19105846 -98756781 + MADE1 DNA Mariner 18 80 0 190 220 85 34 chr9 19105943 19106002 -98756625 + MIR SINE MIR 83 144 -64 412 252 70 7 chr9 19106178 19106321 -98756306 + L1MEd LINE L1 28 179 -5940 559 301 132 83 chr9 19106444 19107449 -98755178 + L1 LINE L1 4167 5221 -925 24 32 0 0 chr9 19108189 19108220 -98754407 + AT_rich Low_complexity Low_complexity 1 31 0 8404 173 41 5 chr9 19108358 19110484 -98752143 + L1P4 LINE L1 3595 5795 -370 2401 146 54 2 chr9 19110502 19110912 -98751715 + L1PA15 LINE L1 5727 6157 -8 23 33 0 0 chr9 19110934 19110964 -98751663 + AT_rich Low_complexity Low_complexity 1 30 0 196 363 71 18 chr9 19111894 19112007 -98750620 - L3 LINE CR1 -3 1574 1456 204 178 22 0 chr9 19112112 19112157 -98750470 + MIR SINE MIR 85 130 -78 306 0 0 0 chr9 19114633 19114667 -98747960 + (CA)n Simple_repeat Simple_repeat 2 35 0 384 319 136 6 chr9 19114750 19114919 -98747708 - L2 LINE L2 -3 3269 3079 1671 86 10 6 chr9 19115046 19115344 -98747283 + THE1C LTR MaLR 1 375 0 1467 164 62 17 chr9 19115446 19115738 -98746889 + L1MB3 LINE L1 5587 5891 -292 669 174 294 0 chr9 19115773 19116019 -98746608 - MER44D DNA MER2_type -6 599 7 295 276 20 31 chr9 19116044 19116142 -98746485 + MIR SINE MIR 166 262 0 3034 231 44 24 chr9 19116263 19117755 -98744872 - L1ME2 LINE L1 -9 6224 4696 300 137 0 0 chr9 19117775 19117826 -98744801 + (CCCA)n Simple_repeat Simple_repeat 2 52 0 986 242 64 58 chr9 19117829 19118172 -98744455 - L1ME2 LINE L1 -2005 4210 3866 * 5227 238 50 63 chr9 19118170 19120142 -98742485 - L1ME2 LINE L1 -2806 3409 1413 272 175 0 0 chr9 19120142 19120199 -98742428 - FLAM_A SINE Alu 0 133 77 5227 238 50 63 chr9 19120199 19120639 -98741988 - L1ME2 LINE L1 -4802 1413 969 2182 162 0 16 chr9 19120639 19121010 -98741617 - MER47A DNA MER2_type 0 366 2 5227 238 50 63 chr9 19121010 19121970 -98740657 - L1ME2 LINE L1 -5246 969 45 316 347 102 14 chr9 19122210 19122426 -98740201 - L3 LINE CR1 -137 1440 1206 218 261 0 0 chr9 19122425 19122471 -98740156 + MIR SINE MIR 98 143 -65 * 184 290 100 50 chr9 19122504 19122604 -98740023 - L2 LINE L2 -25 3247 3143 338 247 70 95 chr9 19123363 19123393 -98739234 - MER5A DNA MER1_type -35 154 125 1755 168 0 24 chr9 19123393 19123691 -98738936 + AluJb SINE Alu 1 291 -21 338 247 70 95 chr9 19123691 19123818 -98738809 - MER5A DNA MER1_type -64 125 1 246 217 203 58 chr9 19124021 19124159 -98738468 + MIR SINE MIR 78 235 -27 1868 160 0 23 chr9 19124456 19124762 -98737865 + AluJo SINE Alu 1 299 -13 31 26 0 0 chr9 19124848 19124886 -98737741 + AT_rich Low_complexity Low_complexity 1 38 0 2380 153 15 5 chr9 19125247 19125646 -98736981 - MER57A LTR ERV1 0 403 1 230 185 62 74 chr9 19126426 19126507 -98736120 - L1ME LINE L1 -280 5841 5762 909 150 61 33 chr9 19126654 19126834 -98735793 + MLT2B2 LTR ERVL 323 507 -8 253 256 103 26 chr9 19127014 19127131 -98735496 - MIR SINE MIR -100 162 37 24 32 0 0 chr9 19127450 19127481 -98735146 + AT_rich Low_complexity Low_complexity 1 31 0 551 208 15 8 chr9 19127481 19127611 -98735016 - L1PA7 LINE L1 -3 6151 6021 1531 236 43 89 chr9 19128751 19129760 -98732867 - L1M4c LINE L1 -4795 2164 1192 2169 266 33 55 chr9 19130229 19131164 -98731463 - L1M4c LINE L1 -5652 1207 3 207 254 139 74 chr9 19131231 19131353 -98731274 + L2 LINE L2 3184 3313 0 806 316 48 30 chr9 19131587 19132127 -98730500 + L1ME3A LINE L1 5312 5816 -305 434 270 142 0 chr9 19132271 19132419 -98730208 + MER58C DNA MER1_type 47 215 0 533 317 55 35 chr9 19132498 19132895 -98729732 + LTR16C LTR ERVL 87 491 0 32 0 0 0 chr9 19133390 19133422 -98729205 + AT_rich Low_complexity Low_complexity 1 32 0 10103 94 11 4 chr9 19133433 19135670 -98726957 - L1PA7 LINE L1 -4 6150 3894 931 157 19 6 chr9 19136178 19136337 -98726290 + MLT1A2 LTR MaLR 1 161 -213 381 58 0 0 chr9 19136374 19136426 -98726201 + (GA)n Simple_repeat Simple_repeat 2 53 0 784 233 5 43 chr9 19136441 19136651 -98725976 + MLT1A2 LTR MaLR 187 388 -2 191 314 20 0 chr9 19136851 19136902 -98725725 + L2 LINE L2 3221 3272 0 258 316 120 26 chr9 19137406 19137523 -98725104 - L2 LINE L2 -37 3235 3108 254 233 19 78 chr9 19137867 19137970 -98724657 + MIR SINE MIR 30 126 -82 26 0 0 0 chr9 19138203 19138229 -98724398 + AT_rich Low_complexity Low_complexity 1 26 0 1221 51 0 6 chr9 19138231 19138388 -98724239 - L1PA3 LINE L1 -3 6152 5997 4339 18 0 2 chr9 19138388 19138886 -98723741 + L1PA3 LINE L1 5458 5954 -201 188 242 189 21 chr9 19139405 19139500 -98723127 - MIR SINE MIR -84 178 68 1891 178 21 23 chr9 19139503 19139930 -98722697 + L1MB7 LINE L1 5744 6169 -15 1242 195 8 41 chr9 19140413 19140659 -98721968 - MER8 DNA MER2_type 0 239 2 185 160 0 40 chr9 19141122 19141172 -98721455 + (TATG)n Simple_repeat Simple_repeat 4 51 0 3710 55 2 1 chr9 19141836 19142313 -98720314 + L1PA7 LINE L1 5670 6150 -4 263 336 66 8 chr9 19143016 19143138 -98719489 + L2 LINE L2 3162 3290 -23 242 161 0 81 chr9 19143365 19143427 -98719200 - MLT2B1 LTR ERVL 0 520 464 384 240 0 0 chr9 19143429 19143529 -98719098 + (TA)n Simple_repeat Simple_repeat 1 100 0 231 100 0 50 chr9 19143538 19143578 -98719049 - MLT2C1 LTR ERVL -48 366 329 297 0 0 0 chr9 19143594 19143627 -98719000 + (GA)n Simple_repeat Simple_repeat 2 34 0 1559 196 27 15 chr9 19143631 19143967 -98718660 - MLT2C1 LTR ERVL -57 340 1 239 246 90 126 chr9 19143972 19144139 -98718488 - MIR3 SINE MIR -9 199 39 270 0 0 0 chr9 19145418 19145448 -98717179 + (TATTG)n Simple_repeat Simple_repeat 2 31 0 370 351 48 11 chr9 19145762 19145950 -98716677 - MIR SINE MIR -50 212 18 220 262 0 0 chr9 19148475 19148517 -98714110 + polypyrimidine Low_complexity Low_complexity 4 45 0 288 0 0 0 chr9 19148522 19148554 -98714073 + (CA)n Simple_repeat Simple_repeat 2 33 0 293 264 99 25 chr9 19148964 19149085 -98713542 + L3 LINE CR1 1404 1533 -44 1887 158 7 10 chr9 19149322 19149620 -98713007 - AluJb SINE Alu -15 297 1 2330 67 7 7 chr9 19151028 19151328 -98711299 - AluY SINE Alu -11 300 1 354 379 49 5 chr9 19151764 19151967 -98710660 + MIR SINE MIR 20 231 -31 2115 119 3 0 chr9 19152617 19152925 -98709702 - AluSx SINE Alu 0 310 2 267 305 181 58 chr9 19153578 19153870 -98708757 - L2 LINE L2 0 3272 2945 486 287 126 51 chr9 19156152 19156410 -98706217 + L3 LINE CR1 1134 1418 -159 381 58 0 0 chr9 19156410 19156462 -98706165 + (TG)n Simple_repeat Simple_repeat 2 53 0 486 287 126 51 chr9 19156462 19156496 -98706131 + L3 LINE CR1 1418 1448 -129 212 139 0 23 chr9 19157421 19157464 -98705163 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 955 182 0 13 chr9 19157475 19157634 -98704993 - AluJo SINE Alu -37 275 119 9483 160 7 8 chr9 19157654 19159344 -98703283 - L1PA13 LINE L1 0 6163 4440 2417 86 0 0 chr9 19159344 19159645 -98702982 + AluY SINE Alu 1 301 -10 9483 160 7 8 chr9 19159645 19160421 -98702206 - L1PA13 LINE L1 -1723 4440 3665 677 226 15 0 chr9 19160421 19160554 -98702073 - AluJo SINE Alu -177 135 1 612 257 8 55 chr9 19160966 19161203 -98701424 - MER58B DNA MER1_type -37 304 79 6660 35 0 7 chr9 19161273 19162118 -98700509 - L1PA5 LINE L1 -1 6153 5315 2530 32 12 17 chr9 19162114 19162459 -98700168 + L1PA5 LINE L1 5000 5342 -804 * 2210 128 0 3 chr9 19163232 19163544 -98699083 + AluSx SINE Alu 2 312 0 298 253 197 8 chr9 19164442 19164622 -98698005 + MIR SINE MIR 3 262 0 250 289 0 0 chr9 19164983 19165035 -98697592 + MER91B DNA MER1_type 2 53 -137 216 0 0 0 chr9 19167075 19167099 -98695528 + (CAAAG)n Simple_repeat Simple_repeat 4 27 0 1296 183 88 60 chr9 19168214 19168668 -98693959 + MLT1C LTR MaLR 1 467 0 382 292 46 20 chr9 19168668 19168820 -98693807 - MIR SINE MIR -67 141 3 22 0 0 0 chr9 19168917 19168939 -98693688 + AT_rich Low_complexity Low_complexity 1 22 0 397 295 132 37 chr9 19170560 19170855 -98691772 + L2 LINE L2 2950 3272 0 1380 147 99 3 chr9 19171462 19171754 -98690873 - MER33 DNA MER1_type -4 320 1 202 325 70 26 chr9 19172492 19172606 -98690021 + L2 LINE L2 3154 3272 0 2323 103 0 0 chr9 19173042 19173344 -98689283 + AluY SINE Alu 1 302 -9 201 280 155 36 chr9 19173467 19173635 -98688992 + L2 LINE L2 2776 2963 -351 475 302 182 26 chr9 19173784 19174246 -98688381 + L2 LINE L2 2712 3241 -72 667 275 132 52 chr9 19174321 19174828 -98687799 + L2 LINE L2 2637 3310 -3 381 264 54 31 chr9 19174835 19174964 -98687663 + L2 LINE L2 3182 3313 0 217 359 99 15 chr9 19175203 19175334 -98687293 - MIR SINE MIR -101 161 20 587 138 8 115 chr9 19175431 19175561 -98687066 + MLT1E LTR MaLR 49 164 -429 * 1299 251 44 58 chr9 19175556 19176038 -98686589 + MLT1E LTR MaLR 119 593 0 267 213 0 0 chr9 19176284 19176331 -98686296 + L2 LINE L2 3251 3297 -16 8194 205 31 8 chr9 19177272 19180197 -98682430 - L1MB3 LINE L1 0 6183 3191 215 250 118 0 chr9 19180338 19180406 -98682221 + MIR SINE MIR 107 182 -80 694 249 88 0 chr9 19181718 19181911 -98680716 + MER63A DNA MER1_type 1 210 0 1043 202 62 87 chr9 19182452 19182808 -98679819 - MLT1A2 LTR MaLR -7 367 21 349 237 76 46 chr9 19183047 19183178 -98679449 - MIR SINE MIR -4 258 124 444 234 211 11 chr9 19183206 19183381 -98679246 - L2 LINE L2 -29 3284 3075 1967 254 88 19 chr9 19183439 19184017 -98678610 - L2 LINE L2 -474 2840 2223 231 312 26 13 chr9 19184160 19184237 -98678390 + MER5A DNA MER1_type 111 188 -1 223 351 30 38 chr9 19184323 19184454 -98678173 + MIR SINE MIR 13 142 -120 608 202 9 0 chr9 19184921 19185030 -98677597 + MER5B DNA MER1_type 1 110 -68 651 269 197 3 chr9 19185031 19185417 -98677210 - L1ME3A LINE L1 0 6170 5710 7588 11 0 0 chr9 19185435 19186481 -98676146 - L1HS LINE L1 -3 6152 5107 782 228 45 4 chr9 19186479 19186696 -98675931 - L1ME3A LINE L1 -444 5677 5467 * 265 350 65 74 chr9 19186710 19187019 -98675608 + L2 LINE L2 2955 3260 -12 21 36 0 0 chr9 19187707 19187735 -98674892 + AT_rich Low_complexity Low_complexity 1 28 0 785 259 8 38 chr9 19187752 19187991 -98674636 - MLT2E LTR ERVL -396 232 1 263 323 0 73 chr9 19189482 19189606 -98673021 + L2 LINE L2 3078 3192 -80 1501 197 20 24 chr9 19189670 19189965 -98672662 - AluJo SINE Alu -18 294 1 228 336 16 105 chr9 19190074 19190321 -98672306 + L2 LINE L2 2987 3211 -61 234 299 23 58 chr9 19193173 19193260 -98669367 - MIR SINE MIR -158 104 21 281 316 40 46 chr9 19193531 19193683 -98668944 + L3 LINE CR1 1418 1568 -9 309 279 150 29 chr9 19193750 19193890 -98668737 + MER5A DNA MER1_type 30 186 -3 231 103 0 0 chr9 19194739 19194768 -98667859 - MER47A DNA MER2_type 0 366 338 * 858 170 92 0 chr9 19194766 19194919 -98667708 - MER47A DNA MER2_type -198 168 2 1894 152 6 67 chr9 19194978 19195339 -98667288 - MLT2B3 LTR ERVL -215 339 1 265 303 118 0 chr9 19195635 19195711 -98666916 - MIR3 SINE MIR -14 194 110 213 125 0 62 chr9 19196424 19196472 -98666155 + (TTTTG)n Simple_repeat Simple_repeat 4 48 0 454 211 131 46 chr9 19196566 19196741 -98665886 - MIR SINE MIR -12 250 61 988 70 31 0 chr9 19197872 19198000 -98664627 - L1MA2 LINE L1 -9 6295 6164 209 286 78 52 chr9 19198000 19198077 -98664550 + L2 LINE L2 3176 3254 -18 264 274 137 0 chr9 19199808 19199925 -98662702 - MIR SINE MIR -56 206 74 2159 136 0 3 chr9 19202489 19202799 -98659828 + AluSx SINE Alu 1 309 -3 2729 99 8 19 chr9 19203012 19203376 -98659251 - THE1B LTR MaLR -4 360 1 1083 248 91 56 chr9 19203480 19203662 -98658965 + L1MB7 LINE L1 4219 4393 -1753 2421 80 0 0 chr9 19203662 19203961 -98658666 + AluY SINE Alu 1 299 -12 1083 248 91 56 chr9 19203961 19204372 -98658255 + L1MB7 LINE L1 4393 4833 -1313 308 227 207 27 chr9 19254651 19254801 -98607826 + L1MCa LINE L1 1238 1414 -5012 1862 144 22 11 chr9 19254857 19255134 -98607493 + AluSx SINE Alu 1 280 -32 367 202 52 107 chr9 19255160 19255412 -98607215 + L1MCa LINE L1 1650 1887 -4720 1288 244 41 24 chr9 19255591 19256083 -98606544 + L1MCa LINE L1 2132 2631 -3976 783 190 0 14 chr9 19257615 19257757 -98604870 + MLT1A1 LTR MaLR 226 365 0 1202 264 112 38 chr9 19257757 19257797 -98604830 - L2 LINE L2 -490 2824 2788 2361 107 107 13 chr9 19257797 19258188 -98604439 + MSTA LTR MaLR 1 428 0 1202 264 112 38 chr9 19258188 19258654 -98603973 - L2 LINE L2 -526 2788 2280 1890 208 150 73 chr9 19258655 19259256 -98603371 - MLT1E1 LTR MaLR -7 647 1 1198 173 5 5 chr9 19259453 19259650 -98602977 - AluJo SINE Alu -32 280 84 516 160 0 101 chr9 19259663 19259747 -98602880 - MIR SINE MIR -117 145 75 2100 105 32 0 chr9 19259747 19260032 -98602595 + AluSg1 SINE Alu 1 294 -15 516 160 0 101 chr9 19260032 19260066 -98602561 - MIR SINE MIR -187 75 39 348 328 25 45 chr9 19260094 19260295 -98602332 - L2 LINE L2 -1154 2160 1964 297 261 142 52 chr9 19260360 19260571 -98602056 - L2 LINE L2 0 3313 3084 1632 196 40 14 chr9 19260601 19260953 -98601674 - MLT1A1 LTR MaLR -4 361 1 835 187 65 84 chr9 19260953 19261034 -98601593 - MLT1B LTR MaLR -133 257 176 318 67 0 0 chr9 19261034 19261079 -98601548 + (CA)n Simple_repeat Simple_repeat 2 46 0 275 0 0 28 chr9 19261083 19261119 -98601508 + (GA)n Simple_repeat Simple_repeat 1 35 0 835 187 65 84 chr9 19261119 19261294 -98601333 - MLT1B LTR MaLR -217 173 1 21 0 0 0 chr9 19262934 19262955 -98599672 + AT_rich Low_complexity Low_complexity 1 21 0 4046 175 51 40 chr9 19263195 19264299 -98598328 + L1MB7 LINE L1 4915 6039 -145 222 37 0 0 chr9 19264299 19264326 -98598301 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 4046 175 51 40 chr9 19264326 19264464 -98598163 + L1MB7 LINE L1 6039 6174 -10 182 324 73 0 chr9 19264558 19264626 -98598001 - L2 LINE L2 0 3272 3200 385 164 33 0 chr9 19265066 19265127 -98597500 - AluS SINE Alu -236 63 1 4689 258 76 33 chr9 19265138 19267896 -98594731 - L1 LINE L1 -896 5250 2335 3678 181 15 54 chr9 19268181 19269000 -98593627 - L1MB8 LINE L1 -9 6169 5383 1159 254 69 65 chr9 19269318 19269613 -98593014 - HAL1 LINE L1 -823 1684 1385 1253 155 32 9 chr9 19269613 19269832 -98592795 - MER58A DNA MER1_type 0 224 1 1159 254 69 65 chr9 19269832 19270104 -98592523 - HAL1 LINE L1 -1122 1385 1115 251 200 0 0 chr9 19270265 19270320 -98592307 - HAL1 LINE L1 -2310 197 143 405 0 0 0 chr9 19270641 19270686 -98591941 + (CA)n Simple_repeat Simple_repeat 2 46 0 267 231 111 19 chr9 19270882 19270990 -98591637 - MIR SINE MIR -31 231 114 250 231 29 87 chr9 19271102 19271206 -98591421 - MIR3 SINE MIR -44 164 67 213 309 12 36 chr9 19271322 19271406 -98591221 - L2 LINE L2 -646 2668 2587 1085 309 124 45 chr9 19272108 19273082 -98589545 + L2 LINE L2 979 2029 -1285 254 319 164 43 chr9 19273296 19273412 -98589215 + L2 LINE L2 3143 3272 0 286 274 186 0 chr9 19275326 19275428 -98587199 + L2 LINE L2 3184 3304 -9 211 150 0 25 chr9 19275654 19275694 -98586933 + (TA)n Simple_repeat Simple_repeat 2 40 0 1852 93 0 4 chr9 19275960 19276207 -98586420 - AluSc SINE Alu -63 246 1 200 35 35 0 chr9 19276543 19276572 -98586055 + (TA)n Simple_repeat Simple_repeat 2 31 0 415 176 0 0 chr9 19276693 19276761 -98585866 - AluS SINE Alu -245 68 1 441 280 56 0 chr9 19278458 19278583 -98584044 + L2 LINE L2 3177 3308 -5 358 302 9 9 chr9 19280114 19280230 -98582397 + MER5A DNA MER1_type 2 117 -72 180 372 54 16 chr9 19281622 19281751 -98580876 + MIR3 SINE MIR 12 145 -63 330 291 17 0 chr9 19282738 19282839 -98579788 - MER5A DNA MER1_type -36 142 50 282 273 91 33 chr9 19282941 19283062 -98579565 - MIR3 SINE MIR -68 140 13 1399 73 0 5 chr9 19283355 19283547 -98579080 - L1P LINE L1 -1390 4756 4566 217 336 45 9 chr9 19284075 19284185 -98578442 + MIR SINE MIR 93 206 -56 186 43 0 0 chr9 19286469 19286492 -98576135 + (T)n Simple_repeat Simple_repeat 1 23 0 548 252 91 47 chr9 19288083 19288337 -98574290 + MLT1I LTR MaLR 145 409 0 7941 10 0 0 chr9 19288775 19290175 -98572452 - L1PA2 LINE L1 -1 6154 4755 * 17070 29 0 0 chr9 19290168 19291655 -98570972 + L1PA3 LINE L1 3303 4820 -1335 189 0 0 0 chr9 19291655 19291676 -98570951 + (CAGAA)n Simple_repeat Simple_repeat 4 24 0 17070 29 0 0 chr9 19291676 19293010 -98569617 + L1PA3 LINE L1 4819 6152 -3 325 266 97 7 chr9 19294495 19294649 -98567978 - MIR3 SINE MIR -19 189 22 4023 25 2 0 chr9 19294701 19295177 -98567450 - L1PA3 LINE L1 0 6155 5679 3587 19 1 0 chr9 19295179 19295842 -98566785 + L1P1 LINE L1 4958 5621 -534 268 378 61 12 chr9 19296225 19296389 -98566238 + L2 LINE L2 3101 3272 0 24 53 0 0 chr9 19298021 19298059 -98564568 + AT_rich Low_complexity Low_complexity 1 38 0 2447 91 3 0 chr9 19298185 19298494 -98564133 + AluY SINE Alu 1 310 -1 314 258 80 116 chr9 19298764 19299066 -98563561 + L1M2 LINE L1 698 988 -5861 441 260 22 39 chr9 19300421 19300602 -98562025 + MER5B DNA MER1_type 1 178 0 2183 108 0 3 chr9 19300629 19300926 -98561701 - AluSq SINE Alu -17 296 1 1867 9 0 0 chr9 19300956 19301175 -98561452 - L1P1 LINE L1 -468 5687 5469 1499 223 20 15 chr9 19302498 19302889 -98559738 - L1MB3 LINE L1 -9 6174 5782 324 221 0 0 chr9 19302890 19302967 -98559660 + (CATATA)n Simple_repeat Simple_repeat 2 78 0 267 207 73 0 chr9 19302970 19303052 -98559575 + L1MC4 LINE L1 6616 6703 -1339 31 44 0 0 chr9 19303073 19303118 -98559509 + AT_rich Low_complexity Low_complexity 1 45 0 1804 161 27 15 chr9 19303118 19303454 -98559173 - MER2 DNA MER2_type -5 340 1 541 162 15 17 chr9 19303454 19303589 -98559038 - L1MB3 LINE L1 -392 5786 5656 1950 147 0 13 chr9 19303589 19303896 -98558731 - AluJb SINE Alu 0 312 10 713 202 0 0 chr9 19304235 19304359 -98558268 + FLAM_C SINE Alu 2 125 -18 925 117 0 0 chr9 19304819 19304956 -98557671 - MSTA LTR MaLR -291 137 1 1909 172 0 3 chr9 19305270 19305572 -98557055 + AluJb SINE Alu 1 301 -11 328 310 39 17 chr9 19306476 19306609 -98556018 + MIR SINE MIR 16 154 -65 301 350 169 25 chr9 19306868 19307222 -98555405 + L2 LINE L2 2806 3210 -103 814 247 45 35 chr9 19307501 19307813 -98554814 - L1M3 LINE L1 -433 5750 5436 225 196 0 0 chr9 19309901 19309947 -98552680 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 301 220 50 40 chr9 19310747 19310847 -98551780 + MIR SINE MIR 147 247 -15 375 320 8 8 chr9 19311181 19311309 -98551318 - MIR SINE MIR -13 249 122 204 364 0 11 chr9 19311367 19311455 -98551172 - MIR SINE MIR -155 107 21 563 227 121 42 chr9 19311577 19311762 -98550865 - MIR SINE MIR -55 153 9 2464 78 0 3 chr9 19313161 19313468 -98549159 - AluSc SINE Alu -3 306 1 23 54 0 0 chr9 19316612 19316649 -98545978 + AT_rich Low_complexity Low_complexity 1 37 0 652 259 210 27 chr9 19319502 19319918 -98542709 - MLT1D LTR MaLR 0 505 1 2102 142 132 5 chr9 19319976 19320356 -98542271 - MSTA LTR MaLR 0 428 1 3426 274 193 40 chr9 19320665 19322519 -98540108 + L2 LINE L2 810 2945 -369 418 198 123 19 chr9 19322912 19323018 -98539609 + MIR3 SINE MIR 81 197 -11 425 354 113 46 chr9 19326129 19327100 -98535527 - L2 LINE L2 0 3272 2243 346 80 0 0 chr9 19327117 19327167 -98535460 - L1PA3 LINE L1 -3 6152 6103 228 67 0 0 chr9 19327167 19327197 -98535430 + (A)n Simple_repeat Simple_repeat 1 30 0 1204 186 6 13 chr9 19328171 19328504 -98534123 - MLT1A1 LTR MaLR 0 365 2 1091 150 45 37 chr9 19328513 19328779 -98533848 + L1MB4 LINE L1 5899 6156 -10 1645 166 9 77 chr9 19329370 19329696 -98532931 - AluJo SINE Alu -8 304 1 2449 142 59 10 chr9 19330182 19330590 -98532037 - MSTA LTR MaLR 0 428 1 8952 25 0 0 chr9 19330603 19332434 -98530193 + L1PA3 LINE L1 4325 6155 0 510 17 0 0 chr9 19332507 19332566 -98530061 + (TG)n Simple_repeat Simple_repeat 2 60 0 779 197 7 20 chr9 19332601 19332753 -98529874 - AluJo SINE Alu -162 150 1 1125 213 90 54 chr9 19332753 19333344 -98529283 + MER114 LTR ERV 37 648 0 194 192 0 14 chr9 19333581 19333654 -98528973 + (TA)n Simple_repeat Simple_repeat 1 72 0 375 23 0 0 chr9 19333759 19333803 -98528824 + (CA)n Simple_repeat Simple_repeat 2 45 0 242 330 55 0 chr9 19335356 19335447 -98527180 - MIR SINE MIR -91 171 76 1816 140 47 4 chr9 19336384 19336663 -98525964 - AluSx SINE Alu -21 291 1 21 0 0 0 chr9 19336808 19336829 -98525798 + AT_rich Low_complexity Low_complexity 1 21 0 46 0 0 0 chr9 19336962 19337008 -98525619 + AT_rich Low_complexity Low_complexity 1 46 0 236 207 16 17 chr9 19337089 19337166 -98525461 - L1ME LINE L1 -297 5824 5745 397 236 0 47 chr9 19337173 19337279 -98525348 - LTR33 LTR ERVL 0 521 421 428 282 82 24 chr9 19337566 19337736 -98524891 - LTR33 LTR ERVL -327 194 15 312 313 106 43 chr9 19337748 19337956 -98524671 - L1ME LINE L1 -380 5741 5521 259 224 41 41 chr9 19337979 19338077 -98524550 - L1ME LINE L1 -2337 5471 5374 432 193 79 14 chr9 19338137 19338277 -98524350 - L1ME LINE L1 -824 5322 5174 1480 197 59 3 chr9 19338315 19338604 -98524023 - AluJo SINE Alu -7 305 1 902 150 0 0 chr9 19338623 19338756 -98523871 - FLAM_C SINE Alu 0 133 1 323 102 0 0 chr9 19339100 19339149 -98523478 - AluJb SINE Alu -7 294 246 1035 124 0 62 chr9 19339151 19339329 -98523298 - AluJb SINE Alu -145 167 1 264 122 0 0 chr9 19339406 19339447 -98523180 + (TCC)n Simple_repeat Simple_repeat 3 43 0 438 276 53 0 chr9 19339929 19340081 -98522546 + L1MD2 LINE L1 5612 5771 -2037 646 175 70 70 chr9 19340234 19340434 -98522193 - MLT1H1 LTR MaLR 0 590 356 770 250 39 125 chr9 19340494 19340896 -98521731 - MLT1H1 LTR MaLR -214 376 7 1293 214 18 0 chr9 19341943 19342218 -98520409 + Tigger7 DNA MER2_type 2 281 -452 890 176 33 0 chr9 19342214 19342396 -98520231 + Tigger7 DNA MER2_type 2300 2487 0 * 456 203 102 17 chr9 19343143 19343261 -98519366 - MLT1H1 LTR MaLR -421 134 7 1251 252 106 7 chr9 19344087 19344512 -98518115 + MLT1C LTR MaLR 1 467 0 2164 133 10 0 chr9 19345934 19346243 -98516384 - AluSx SINE Alu 0 312 1 1095 291 74 25 chr9 19346448 19346933 -98515694 - MLT1J LTR MaLR 0 511 3 213 361 62 8 chr9 19347043 19347173 -98515454 - L2 LINE L2 -2 3270 3134 214 273 0 0 chr9 19347309 19347353 -98515274 + L2 LINE L2 3209 3252 -20 338 278 118 14 chr9 19347596 19347740 -98514887 + MIR SINE MIR 28 186 -76 2220 106 0 7 chr9 19347746 19348038 -98514589 - AluSp SINE Alu -23 290 1 315 290 89 8 chr9 19349663 19349787 -98512840 - L1MC4 LINE L1 -1 8041 7908 21 0 0 0 chr9 19350463 19350484 -98512143 + AT_rich Low_complexity Low_complexity 1 21 0 1867 197 67 25 chr9 19350850 19351281 -98511346 + L1MD2 LINE L1 5904 6352 -7 761 166 0 102 chr9 19351347 19351557 -98511070 - AluSg/x SINE Alu 0 305 115 334 278 113 36 chr9 19352788 19352982 -98509645 - L1ME3A LINE L1 0 6170 5962 611 241 48 63 chr9 19353191 19353506 -98509121 - L1MC5 LINE L1 -758 7203 6894 270 301 48 36 chr9 19353514 19353680 -98508947 - L1MC4 LINE L1 -1197 6845 6678 363 297 120 29 chr9 19353933 19354108 -98508519 - MIR SINE MIR 0 262 72 21 0 0 0 chr9 19354939 19354960 -98507667 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 19357392 19357414 -98505213 + AT_rich Low_complexity Low_complexity 1 22 0 256 346 37 9 chr9 19358213 19358320 -98504307 + L2 LINE L2 2943 3052 -220 22 35 0 0 chr9 19359300 19359329 -98503298 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr9 19359548 19359578 -98503049 + AT_rich Low_complexity Low_complexity 1 30 0 990 114 43 22 chr9 19359579 19359763 -98502864 - L1MA9 LINE L1 0 7272 7085 8813 35 0 26 chr9 19359786 19361682 -98500945 - L1PA4 LINE L1 -3 6152 4287 3051 35 0 0 chr9 19361682 19362049 -98500578 + L1PA4 LINE L1 3926 4292 -1854 * 8922 174 31 52 chr9 19362045 19362914 -98499713 - L1MA9 LINE L1 -173 7099 6213 1630 198 70 6 chr9 19362914 19363257 -98499370 - MLT1A1 LTR MaLR 0 365 1 8922 174 31 52 chr9 19363257 19365360 -98497267 - L1MA9 LINE L1 -1059 6213 4194 281 266 0 0 chr9 19365357 19365421 -98497206 - L1MA9 LINE L1 -3409 3697 3634 * 2502 258 81 38 chr9 19365423 19367961 -98494666 - L1MA9 LINE L1 -3445 3661 5 267 237 105 42 chr9 19367970 19368160 -98494467 - L1MEd LINE L1 -5023 1096 895 1409 215 21 48 chr9 19368180 19368376 -98494251 + MLT1A1 LTR MaLR 4 187 -178 1654 170 77 70 chr9 19368376 19368805 -98493822 - MSTB1 LTR MaLR 0 432 1 1409 215 21 48 chr9 19368805 19368980 -98493647 + MLT1A1 LTR MaLR 187 365 0 390 335 52 18 chr9 19369061 19369333 -98493294 - L1MEd LINE L1 -5312 807 527 2152 113 3 0 chr9 19369982 19370274 -98492353 + AluSg SINE Alu 1 293 -17 351 263 123 9 chr9 19370547 19370661 -98491966 - MER5B DNA MER1_type 0 178 52 2418 81 0 3 chr9 19370710 19371019 -98491608 - AluSc SINE Alu -1 308 1 286 216 0 0 chr9 19371029 19371080 -98491547 + MER5B DNA MER1_type 127 177 -1 228 237 229 8 chr9 19371848 19371966 -98490661 - L1ME4a LINE L1 -2 6119 5976 294 235 145 42 chr9 19372177 19372343 -98490284 - L1ME4a LINE L1 -379 5742 5560 183 367 122 15 chr9 19372497 19372693 -98489934 + MIR SINE MIR 46 262 0 301 301 12 0 chr9 19373344 19373427 -98489200 - MIR3 SINE MIR -17 191 108 200 328 0 16 chr9 19373498 19373562 -98489065 - MIR SINE MIR -57 151 89 24 0 0 0 chr9 19376164 19376188 -98486439 + AT_rich Low_complexity Low_complexity 1 24 0 180 111 0 0 chr9 19376198 19376225 -98486402 + (T)n Simple_repeat Simple_repeat 1 27 0 384 200 215 68 chr9 19376509 19376714 -98485913 - MER106A DNA MER1_type -1 235 1 595 283 154 47 chr9 19376761 19377447 -98485180 - L1ME4a LINE L1 -2 6119 5360 25 0 0 0 chr9 19380051 19380076 -98482551 + AT_rich Low_complexity Low_complexity 1 25 0 325 205 9 77 chr9 19380169 19380385 -98482242 + AluJo SINE Alu 25 289 -13 188 188 424 24 chr9 19380410 19380495 -98482132 - MIR SINE MIR -97 165 47 279 0 0 0 chr9 19381741 19381772 -98480855 + (TG)n Simple_repeat Simple_repeat 2 32 0 693 313 57 8 chr9 19383444 19383690 -98478937 + MIR SINE MIR 5 262 0 23 33 0 0 chr9 19383809 19383839 -98478788 + AT_rich Low_complexity Low_complexity 1 30 0 6070 10 0 0 chr9 19387256 19387941 -98474686 - L1PA2 LINE L1 -2 6153 5469 251 352 34 50 chr9 19388580 19388759 -98473868 - MLT1K LTR MaLR -411 177 2 343 300 63 89 chr9 19389058 19389405 -98473222 - L2 LINE L2 -87 3185 2848 515 269 152 5 chr9 19389960 19390157 -98472470 + MIR SINE MIR 37 262 0 327 247 14 0 chr9 19390282 19390355 -98472272 + MIR SINE MIR 141 214 -48 * 477 325 76 21 chr9 19390347 19390584 -98472043 - MIR SINE MIR -11 251 2 225 234 0 21 chr9 19390692 19390739 -98471888 + MIR SINE MIR 47 92 -170 453 348 49 46 chr9 19392568 19392913 -98469714 - L2 LINE L2 0 3272 2927 307 270 197 24 chr9 19393005 19393213 -98469414 - MIR SINE MIR -14 248 3 1542 207 115 0 chr9 19393700 19394091 -98468536 + MER63B DNA MER1_type 1 436 0 203 304 51 13 chr9 19394121 19394200 -98468427 + L2 LINE L2 3191 3272 0 377 195 0 102 chr9 19394252 19394380 -98468247 + MIR3 SINE MIR 88 202 -6 189 345 0 0 chr9 19395200 19395255 -98467372 + MIR3 SINE MIR 118 172 -36 455 315 82 18 chr9 19396163 19396442 -98466185 - MLT1I LTR MaLR -39 370 74 210 140 20 40 chr9 19396854 19396904 -98465723 + CT-rich Low_complexity Low_complexity 3 51 0 277 259 0 94 chr9 19397082 19397167 -98465460 + L2 LINE L2 3185 3261 -11 26 30 0 0 chr9 19398565 19398598 -98464029 + AT_rich Low_complexity Low_complexity 1 33 0 380 279 97 32 chr9 19399323 19399477 -98463150 - MIR3 SINE MIR -18 190 27 293 297 149 15 chr9 19402675 19402870 -98459757 - MIR SINE MIR -6 256 36 371 332 58 10 chr9 19403158 19403363 -98459264 - MIR SINE MIR -14 248 34 541 279 73 0 chr9 19403381 19403546 -98459081 - MER5B DNA MER1_type 0 178 2 397 291 89 11 chr9 19404614 19404793 -98457834 - MER117 DNA MER1_type -3 194 2 681 292 15 0 chr9 19405641 19405843 -98456784 + MER58C DNA MER1_type 11 215 0 217 294 130 0 chr9 19405881 19405973 -98456654 - MIR SINE MIR 0 262 159 875 263 95 99 chr9 19405973 19406509 -98456118 + MLT1F LTR MaLR 1 534 -8 882 254 57 35 chr9 19406514 19406993 -98455634 + MLT1F-int LTR MaLR 1 601 -770 318 292 193 16 chr9 19407205 19407397 -98455230 + MLT1F-int LTR MaLR 659 884 -487 249 294 7 96 chr9 19407500 19407646 -98454981 + MLT1F-int LTR MaLR 963 1095 -276 597 226 244 78 chr9 19407909 19408179 -98454448 + MLT1F1 LTR MaLR 72 386 -181 875 162 73 17 chr9 19408191 19408370 -98454257 - THE1C LTR MaLR -186 189 1 553 270 62 6 chr9 19408636 19408814 -98453813 + MER5A DNA MER1_type 1 188 -1 214 286 36 36 chr9 19409841 19409925 -98452702 + MIR SINE MIR 20 103 -105 188 184 0 0 chr9 19410454 19410492 -98452135 - L2 LINE L2 -4 3309 3272 189 147 0 0 chr9 19410620 19410654 -98451973 + (TCTCCC)n Simple_repeat Simple_repeat 6 39 0 1048 150 23 6 chr9 19410844 19411017 -98451610 - MER5A DNA MER1_type -8 181 6 12751 212 47 8 chr9 19411911 19416197 -98446430 - L1PA16 LINE L1 -3 6865 2415 6090 32 8 0 chr9 19416192 19416935 -98445692 - L1PA4 LINE L1 -1269 4877 4129 * 7565 25 1 8 chr9 19416936 19418219 -98444408 + L1PA4 LINE L1 4879 6155 0 2526 237 28 43 chr9 19418220 19419099 -98443528 - L1PA16 LINE L1 -4425 2423 1474 351 359 77 41 chr9 19419955 19420125 -98442502 - L1M2 LINE L1 -5902 947 772 1004 365 27 26 chr9 19420125 19420711 -98441916 - L1PA16 LINE L1 -6200 638 52 26 30 0 0 chr9 19420724 19420757 -98441870 + AT_rich Low_complexity Low_complexity 1 33 0 615 199 48 7 chr9 19420899 19421045 -98441582 + L1MA7 LINE L1 6140 6291 0 27 29 0 0 chr9 19422729 19422763 -98439864 + AT_rich Low_complexity Low_complexity 1 34 0 818 287 32 59 chr9 19423130 19423503 -98439124 + L2 LINE L2 2946 3308 -5 442 331 71 52 chr9 19423514 19423822 -98438805 - L2 LINE L2 -4 3268 2955 21 0 0 0 chr9 19427443 19427464 -98435163 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr9 19428594 19428623 -98434004 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr9 19429601 19429622 -98433005 + AT_rich Low_complexity Low_complexity 1 21 0 385 295 71 64 chr9 19430014 19430251 -98432376 - MIR SINE MIR -13 249 10 288 363 53 18 chr9 19430751 19430922 -98431705 + MER5B DNA MER1_type 1 177 -1 378 137 82 0 chr9 19431128 19431201 -98431426 - MADE1 DNA Mariner 0 80 2 235 167 21 21 chr9 19431714 19431762 -98430865 - L2 LINE L2 -11 3302 3255 220 367 0 44 chr9 19432414 19432504 -98430123 - MIR SINE MIR -106 102 17 328 329 12 31 chr9 19432650 19432811 -98429816 + MIR3 SINE MIR 15 172 -36 1013 241 151 28 chr9 19433945 19434264 -98428363 - MLT1J LTR MaLR -153 358 1 277 343 76 21 chr9 19434341 19434534 -98428093 - MIR SINE MIR -27 235 33 455 234 203 66 chr9 19434785 19434921 -98427706 - LTR50 LTR ERVL -11 784 668 1130 200 24 5 chr9 19434921 19435131 -98427496 + MER20 DNA MER1_type 2 215 -4 455 234 203 66 chr9 19435131 19435297 -98427330 - LTR50 LTR ERVL -127 668 359 328 312 181 0 chr9 19435467 19435704 -98426923 - L2 LINE L2 -934 2380 2101 961 112 26 164 chr9 19436038 19436306 -98426321 + L1MC3 LINE L1 7548 7778 -7 1705 179 84 48 chr9 19436482 19436924 -98425703 - MLT1C LTR MaLR -9 458 1 663 269 132 64 chr9 19436947 19437268 -98425359 + MLT1L LTR MaLR 162 520 -95 2418 85 0 0 chr9 19437268 19437574 -98425053 - AluY SINE Alu -5 306 1 663 269 132 64 chr9 19437574 19437676 -98424951 + MLT1L LTR MaLR 520 614 -1 2337 79 0 0 chr9 19438671 19438962 -98423665 + AluY SINE Alu 1 291 -20 23 33 0 0 chr9 19439189 19439219 -98423408 + AT_rich Low_complexity Low_complexity 1 30 0 581 310 60 25 chr9 19439853 19440137 -98422490 - L2 LINE L2 -93 3220 2927 253 309 112 13 chr9 19440165 19440317 -98422310 + MIR SINE MIR 32 198 -64 230 288 0 50 chr9 19441348 19441428 -98421199 - L2 LINE L2 0 3313 3238 258 281 0 0 chr9 19441784 19441848 -98420779 + (TATATG)n Simple_repeat Simple_repeat 3 66 0 459 309 25 35 chr9 19442166 19442367 -98420260 - MIR SINE MIR -7 255 57 633 280 86 75 chr9 19445268 19445705 -98416922 + L2 LINE L2 2784 3222 -50 198 231 0 0 chr9 19445747 19445812 -98416815 + (TGAA)n Simple_repeat Simple_repeat 2 66 0 201 315 0 33 chr9 19449047 19449139 -98413488 + MIR SINE MIR 117 205 -57 21 0 0 0 chr9 19450062 19450083 -98412544 + AT_rich Low_complexity Low_complexity 1 21 0 1341 197 0 68 chr9 19450696 19450991 -98411636 + AluJo SINE Alu 2 276 -36 24 32 0 0 chr9 19452416 19452447 -98410180 + AT_rich Low_complexity Low_complexity 1 31 0 306 0 0 0 chr9 19452603 19452637 -98409990 + (T)n Simple_repeat Simple_repeat 1 34 0 1040 269 76 7 chr9 19453038 19453347 -98409280 + MER113 DNA MER1_type? 7 358 -163 2491 70 0 16 chr9 19453347 19453663 -98408964 + AluSx SINE Alu 1 311 -1 1040 269 76 7 chr9 19453663 19453799 -98408828 + MER113 DNA MER1_type? 358 483 -38 3461 36 10 0 chr9 19454378 19454795 -98407832 + L1PA3 LINE L1 5735 6155 0 623 314 87 13 chr9 19454796 19455025 -98407602 + MIR SINE MIR 9 254 -8 803 309 74 13 chr9 19455363 19455741 -98406886 + L3b LINE CR1 1115 1515 -68 1182 218 67 27 chr9 19455869 19456200 -98406427 - MER2 DNA MER2_type 0 344 1 645 327 80 40 chr9 19456354 19456681 -98405946 - L2 LINE L2 -1 3271 2932 877 173 109 12 chr9 19456763 19457011 -98405616 + MER33 DNA MER1_type 31 302 -22 626 255 90 19 chr9 19457013 19457050 -98405577 + MER112 DNA MER1_type 29 62 -198 207 100 0 0 chr9 19457050 19457080 -98405547 + (CATA)n Simple_repeat Simple_repeat 3 32 0 626 255 90 19 chr9 19457080 19457254 -98405373 + MER112 DNA MER1_type 62 255 -5 261 299 267 58 chr9 19457324 19457939 -98404688 - L2 LINE L2 -589 2725 1983 2126 137 0 6 chr9 19462118 19462529 -98400098 - AluSq SINE Alu 0 409 1 183 250 26 9 chr9 19462647 19462763 -98399864 + CT-rich Low_complexity Low_complexity 3 120 0 297 336 143 41 chr9 19463930 19464344 -98398283 - L2 LINE L2 0 3313 2858 1579 306 146 41 chr9 19464446 19465814 -98396813 - L2 LINE L2 -600 2714 1204 2172 73 3 18 chr9 19467039 19467384 -98395243 + AluY SINE Alu 1 341 0 736 307 137 30 chr9 19467462 19468023 -98394604 - L2 LINE L2 -2235 1079 459 218 299 10 62 chr9 19468132 19468229 -98394398 + MIR SINE MIR 19 110 -98 239 264 114 54 chr9 19468309 19468460 -98394167 - MIR SINE MIR -62 146 2 25 31 0 0 chr9 19469379 19469411 -98393216 + AT_rich Low_complexity Low_complexity 1 32 0 1281 145 5 10 chr9 19469976 19470169 -98392458 - AluSq SINE Alu -39 274 83 2464 99 0 0 chr9 19471880 19472192 -98390435 + AluSx SINE Alu 1 312 0 351 154 0 0 chr9 19472293 19472358 -98390269 + CT-rich Low_complexity Low_complexity 1 65 0 1052 312 111 5 chr9 19472382 19472864 -98389763 - L2 LINE L2 -39 3274 2742 843 259 49 0 chr9 19472882 19473087 -98389540 + MIR SINE MIR 39 253 -9 336 234 0 24 chr9 19473093 19473217 -98389410 + (TA)n Simple_repeat Simple_repeat 2 122 0 399 220 0 58 chr9 19473232 19473423 -98389204 + (TA)n Simple_repeat Simple_repeat 1 180 0 1044 283 111 8 chr9 19473463 19473823 -98388804 - L2 LINE L2 -611 2703 2307 22 0 0 0 chr9 19475126 19475148 -98387479 + AT_rich Low_complexity Low_complexity 1 22 0 2880 194 25 8 chr9 19475616 19476712 -98385915 + L1MB1 LINE L1 4709 5827 -341 675 144 0 0 chr9 19476712 19476823 -98385804 + AluSp/q SINE Alu 201 311 -2 380 42 0 0 chr9 19476824 19476872 -98385755 - L1P LINE L1 -2464 3682 3635 3071 65 18 0 chr9 19476872 19477263 -98385364 + L1PA7 LINE L1 5748 6153 -1 1409 153 67 0 chr9 19477265 19477547 -98385080 + L1MB1 LINE L1 5847 6147 -21 3443 151 54 11 chr9 19477717 19478417 -98384210 + L1MB3 LINE L1 5451 6180 -3 351 65 0 0 chr9 19478693 19478739 -98383888 + (TG)n Simple_repeat Simple_repeat 2 47 0 384 335 35 29 chr9 19479183 19479353 -98383274 + MIR SINE MIR 1 171 -91 500 333 58 61 chr9 19479745 19480039 -98382588 - L2 LINE L2 -6 3266 2974 261 180 60 0 chr9 19481856 19481906 -98380721 - MIR SINE MIR -113 149 97 1584 120 0 30 chr9 19482274 19482508 -98380119 - AluSc SINE Alu -82 227 1 391 240 29 10 chr9 19482696 19482800 -98379827 + MER5A DNA MER1_type 4 109 -80 2315 105 0 3 chr9 19483055 19483359 -98379268 - AluSx SINE Alu -2 310 8 747 250 22 0 chr9 19483387 19483567 -98379060 - L1MC5 LINE L1 -1144 6817 6634 484 194 46 19 chr9 19484028 19484136 -98378491 + MER3 DNA MER1_type 1 111 -98 657 227 70 38 chr9 19484285 19484579 -98378048 - L1ME2 LINE L1 -11 6153 5840 * 1897 239 81 59 chr9 19484576 19485476 -98377151 - L1ME2 LINE L1 -10 6223 5306 1345 247 89 6 chr9 19485501 19486364 -98376263 - L1ME2 LINE L1 -1024 5191 4197 399 358 44 21 chr9 19486374 19486712 -98375915 - L1ME2 LINE L1 -6015 381 36 545 424 67 54 chr9 19486771 19486968 -98375659 - HAL1b LINE L1 -796 552 359 252 0 0 0 chr9 19486968 19486996 -98375631 + (TA)n Simple_repeat Simple_repeat 2 29 0 545 424 67 54 chr9 19486996 19487279 -98375348 - HAL1b LINE L1 -989 359 66 2167 83 42 0 chr9 19487290 19487578 -98375049 - AluY SINE Alu -11 300 1 943 146 0 0 chr9 19487940 19488077 -98374550 - AluJb SINE Alu -19 293 157 2134 125 0 10 chr9 19488868 19489180 -98373447 + AluSg SINE Alu 1 309 -1 208 214 0 0 chr9 19491420 19491462 -98371165 - MIR3 SINE MIR -15 193 152 259 278 11 0 chr9 19491588 19491678 -98370949 - MER103 DNA DNA -70 96 6 223 320 152 8 chr9 19491758 19491883 -98370744 - MIR3 SINE MIR -50 158 16 1368 149 0 0 chr9 19492175 19492390 -98370237 + L1PB4 LINE L1 5928 6142 -14 559 303 49 0 chr9 19492716 19492901 -98369726 + MIR3 SINE MIR 15 208 0 1893 169 3 0 chr9 19495849 19496151 -98366476 - AluJb SINE Alu -9 303 1 180 306 28 56 chr9 19499734 19499806 -98362821 - L2 LINE L2 0 3272 3203 464 333 89 22 chr9 19499947 19500262 -98362365 + LTR16C LTR ERVL 156 491 0 384 301 87 40 chr9 19500349 19500522 -98362105 + L2 LINE L2 3125 3305 -8 201 326 47 47 chr9 19500583 19500669 -98361958 - MIR SINE MIR -104 104 19 215 226 16 16 chr9 19501345 19501407 -98361220 - MIR SINE MIR -10 252 191 581 188 56 69 chr9 19501465 19501609 -98361018 - MIR SINE MIR -64 198 57 242 347 158 16 chr9 19501686 19501876 -98360751 - L2 LINE L2 -1235 2079 1863 560 246 0 168 chr9 19503220 19503517 -98359110 - MIR SINE MIR -7 255 9 972 56 0 0 chr9 19504370 19504496 -98358131 - L1PA4 LINE L1 -3 6152 6027 1836 265 110 14 chr9 19504498 19505453 -98357174 + L2 LINE L2 2274 3312 -1 613 255 176 5 chr9 19506621 19506809 -98355818 + MIR SINE MIR 1 220 -42 2017 103 3 36 chr9 19506935 19507236 -98355391 - AluSx SINE Alu -4 308 18 1658 224 88 31 chr9 19507620 19508133 -98354494 - MLT1F LTR MaLR 0 542 1 247 262 48 48 chr9 19509152 19509339 -98353288 - L1ME4a LINE L1 -1 6120 5934 369 216 80 24 chr9 19509495 19509620 -98353007 - L1MB7 LINE L1 -100 6084 5953 386 138 0 0 chr9 19509621 19509686 -98352941 + L1MB7 LINE L1 5884 5948 -226 644 203 73 0 chr9 19509782 19509959 -98352668 + L1M4 LINE L1 5599 5788 -396 1442 183 0 4 chr9 19510459 19510689 -98351938 - AluJb SINE Alu -83 229 1 1069 204 44 11 chr9 19511234 19511504 -98351123 - L1MB7 LINE L1 0 6184 5906 1442 176 68 23 chr9 19511508 19511727 -98350900 - L1MB7 LINE L1 -582 5592 5384 2230 109 0 3 chr9 19511727 19512029 -98350598 - AluSc SINE Alu -7 302 2 1442 176 68 23 chr9 19512029 19512248 -98350379 - L1MB7 LINE L1 -790 5384 5138 2264 130 8 24 chr9 19512710 19513080 -98349547 - THE1B LTR MaLR 0 364 1 1379 187 16 13 chr9 19513080 19513390 -98349237 - L1MB7 LINE L1 -998 5148 4838 272 350 10 10 chr9 19513525 19513625 -98349002 + MIR SINE MIR 8 107 -155 240 250 56 0 chr9 19513730 19513802 -98348825 + MIR SINE MIR 114 189 -73 305 258 75 0 chr9 19513842 19513935 -98348692 - L1ME3A LINE L1 -17 6153 6054 412 18 35 0 chr9 19515128 19515185 -98347442 + (CA)n Simple_repeat Simple_repeat 2 60 0 1241 160 213 4 chr9 19516024 19516268 -98346359 - AluJb SINE Alu -17 295 1 335 369 35 0 chr9 19516965 19517106 -98345521 - MIR3 SINE MIR -23 185 40 225 270 79 0 chr9 19517355 19517418 -98345209 + L3 LINE CR1 1503 1570 -7 195 250 204 68 chr9 19519422 19519554 -98343073 + MIR3 SINE MIR 16 165 -43 607 136 27 0 chr9 19519998 19520108 -98342519 - L1MB4 LINE L1 -66 6114 6002 189 263 88 0 chr9 19521038 19521118 -98341509 - MIR SINE MIR 0 262 176 203 324 0 81 chr9 19521161 19521272 -98341355 - MER5B DNA MER1_type -1 177 76 532 178 22 0 chr9 19523172 19523262 -98339365 + FLAM_A SINE Alu 1 92 -50 262 254 45 27 chr9 19523369 19523479 -98339148 + (TATATG)n Simple_repeat Simple_repeat 3 114 0 503 312 65 39 chr9 19523566 19523808 -98338819 - MIR SINE MIR -11 251 9 489 283 22 60 chr9 19523874 19524058 -98338569 - MER5B DNA MER1_type -1 177 1 250 343 63 74 chr9 19524137 19524877 -98337750 - L2 LINE L2 -55 3217 2415 494 239 30 60 chr9 19525771 19525938 -98336689 + MIR SINE MIR 50 211 -51 374 333 85 12 chr9 19526677 19526842 -98335785 + MIR3 SINE MIR 31 207 -1 256 348 169 20 chr9 19527767 19527968 -98334659 - L2 LINE L2 0 3272 3042 2721 161 51 13 chr9 19527993 19528526 -98334101 - MER68 LTR ERV1 -9 553 1 283 227 125 11 chr9 19528804 19528892 -98333735 - L2 LINE L2 -20 3252 3155 254 341 77 35 chr9 19529558 19529767 -98332860 + MIR SINE MIR 40 261 -1 279 295 115 0 chr9 19530294 19530416 -98332211 - MIR SINE MIR -125 137 2 1959 118 14 0 chr9 19531911 19532225 -98330402 - AluSq SINE Alu 0 318 1 3397 188 75 30 chr9 19533242 19534367 -98328260 + L1MC3 LINE L1 4911 5306 -840 226 354 157 11 chr9 19534823 19535001 -98327626 + MIR SINE MIR 47 250 -12 396 281 44 37 chr9 19535667 19535802 -98326825 + L2 LINE L2 3178 3313 0 26 30 0 0 chr9 19536293 19536326 -98326301 + AT_rich Low_complexity Low_complexity 1 33 0 188 326 129 8 chr9 19536806 19536938 -98325689 - L2 LINE L2 -4 3268 3121 275 347 21 26 chr9 19536971 19537161 -98325466 - L2 LINE L2 -344 2970 2782 390 216 23 0 chr9 19537225 19537313 -98325314 + MER5A DNA MER1_type 17 106 -83 944 347 111 34 chr9 19537406 19538680 -98323947 - L2 LINE L2 -587 2727 1356 466 314 46 31 chr9 19539697 19539891 -98322736 - MIR SINE MIR -34 228 32 231 304 194 36 chr9 19540101 19540493 -98322134 - L2 LINE L2 -1071 2243 1790 527 327 98 31 chr9 19540520 19540847 -98321780 - L3 LINE CR1 -316 1261 913 394 321 164 13 chr9 19540922 19541081 -98321546 + MIR3 SINE MIR 15 197 -11 320 298 40 32 chr9 19541108 19541232 -98321395 - L2 LINE L2 -1 3271 3147 692 245 130 12 chr9 19541894 19542147 -98320480 - MLT1H1 LTR MaLR 0 555 273 1288 127 75 0 chr9 19543142 19543354 -98319273 - MER30 DNA MER1_type -1 229 2 938 262 76 60 chr9 19543534 19543980 -98318647 - LTR16B LTR ERVL -6 458 6 270 95 0 0 chr9 19544307 19544349 -98318278 + (CA)n Simple_repeat Simple_repeat 1 42 0 1548 195 6 29 chr9 19548336 19548354 -98314273 - AluJo SINE Alu -6 306 289 234 0 0 0 chr9 19548354 19548380 -98314247 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 1548 195 6 29 chr9 19548380 19548674 -98313953 - AluJo SINE Alu -23 289 1 195 253 12 48 chr9 19549469 19549552 -98313075 + L3b LINE CR1 1311 1390 -193 916 166 86 140 chr9 19549656 19550120 -98312507 - MLT1E3 LTR MaLR 0 624 67 464 279 107 0 chr9 19550578 19550718 -98311909 - MIR SINE MIR 0 262 108 406 291 119 0 chr9 19550841 19550975 -98311652 + MIR SINE MIR 32 181 -81 7699 34 2 0 chr9 19555805 19557511 -98305116 - L1PA4 LINE L1 0 6155 4454 227 250 193 0 chr9 19557987 19558075 -98304552 - MIR SINE MIR -20 242 138 355 248 43 8 chr9 19558630 19558747 -98303880 + L1MC4a LINE L1 4459 4579 -1567 326 279 149 0 chr9 19558748 19558902 -98303725 + L1MC4a LINE L1 4668 4844 -1302 273 263 54 73 chr9 19559046 19559251 -98303376 + L1MC4a LINE L1 5083 5283 -863 * 3244 69 5 0 chr9 19559249 19559681 -98302946 - L1P LINE L1 -876 5270 4837 2152 68 10 0 chr9 19559681 19559973 -98302654 + L1PA7 LINE L1 5858 6154 0 871 288 77 17 chr9 19559990 19560506 -98302121 + L1MC4a LINE L1 5295 5808 -354 317 312 29 65 chr9 19562821 19562959 -98299668 + MIR3 SINE MIR 64 196 -12 207 0 0 0 chr9 19563755 19563778 -98298849 + (A)n Simple_repeat Simple_repeat 1 23 0 354 276 14 14 chr9 19564042 19564187 -98298440 + (TAA)n Simple_repeat Simple_repeat 1 145 0 180 311 236 14 chr9 19564198 19564346 -98298281 - MIR SINE MIR -1 261 81 207 307 79 70 chr9 19564393 19564507 -98298120 - L2 LINE L2 -4 3268 3154 808 264 146 65 chr9 19565154 19565627 -98297000 - MLT1J LTR MaLR 0 511 1 17469 45 58 3 chr9 19565757 19567996 -98294631 + L1PA3 LINE L1 1 2363 -3783 2757 20 0 0 chr9 19567996 19568300 -98294327 + AluYa5 SINE Alu 1 304 -7 8087 34 0 1 chr9 19568300 19570044 -98292583 + L1PA3 LINE L1 4411 6153 -2 339 158 118 13 chr9 19570048 19570124 -98292503 + L1MB7 LINE L1 6061 6144 -40 462 344 8 0 chr9 19570481 19570612 -98292015 - MIR SINE MIR -130 132 1 252 297 58 58 chr9 19570629 19570767 -98291860 - MIR SINE MIR -96 166 29 2057 188 34 1 chr9 19570834 19571460 -98291167 + L1MC/D LINE L1 4849 5491 -744 317 221 0 0 chr9 19572719 19572787 -98289840 - Tigger4(Zombi) DNA MER2_type 0 2731 2664 1075 224 56 32 chr9 19572819 19573305 -98289322 + MLT1E LTR MaLR 1 593 0 330 67 0 0 chr9 19574577 19574622 -98288005 + (CA)n Simple_repeat Simple_repeat 2 46 0 217 222 0 0 chr9 19575475 19575520 -98287107 + GA-rich Low_complexity Low_complexity 4 48 0 319 279 127 19 chr9 19576565 19576723 -98285904 - MIR SINE MIR -13 249 75 23 0 0 0 chr9 19577298 19577321 -98285306 + AT_rich Low_complexity Low_complexity 1 23 0 220 274 0 16 chr9 19581213 19581275 -98281352 + CT-rich Low_complexity Low_complexity 1 61 0 374 240 96 0 chr9 19582765 19582869 -98279758 + MIR SINE MIR 149 262 0 348 239 179 16 chr9 19583089 19583273 -98279354 - MIR SINE MIR -29 233 20 728 275 94 43 chr9 19584406 19584863 -98277764 + L2 LINE L2 2776 3237 -76 5012 25 0 0 chr9 19584926 19585514 -98277113 - L1PA3 LINE L1 -1499 4647 4060 7840 17 0 0 chr9 19585516 19587014 -98275613 + L1PA3 LINE L1 4658 6155 0 24 53 0 0 chr9 19587092 19587130 -98275497 + AT_rich Low_complexity Low_complexity 1 38 0 768 182 0 15 chr9 19587892 19588024 -98274603 + FLAM_C SINE Alu 1 130 -3 21 57 0 0 chr9 19588474 19588509 -98274118 + AT_rich Low_complexity Low_complexity 1 35 0 564 330 28 14 chr9 19589440 19589658 -98272969 + MIR SINE MIR 5 225 -37 2167 124 38 27 chr9 19591895 19592266 -98270361 + THE1C LTR MaLR 1 375 0 236 260 177 10 chr9 19593284 19593380 -98269247 - MIR SINE MIR -131 131 20 2321 115 0 0 chr9 19593512 19593824 -98268803 + AluSx SINE Alu 1 312 0 261 0 0 0 chr9 19593983 19594012 -98268615 + (A)n Simple_repeat Simple_repeat 1 29 0 2241 121 0 3 chr9 19594808 19595115 -98267512 + AluSq SINE Alu 1 306 -7 180 273 0 0 chr9 19595132 19595198 -98267429 + GA-rich Low_complexity Low_complexity 1 66 0 363 262 43 27 chr9 19595219 19595389 -98267238 - MIR SINE MIR -3 259 38 454 302 98 51 chr9 19595872 19596107 -98266520 + MIR SINE MIR 17 262 0 652 270 56 0 chr9 19596476 19596654 -98265973 - MIR SINE MIR -36 226 39 235 303 40 13 chr9 19596845 19596921 -98265706 + MIR SINE MIR 107 184 -78 23 33 0 0 chr9 19598148 19598178 -98264449 + AT_rich Low_complexity Low_complexity 1 30 0 203 115 131 0 chr9 19598191 19598252 -98264375 + (TTAA)n Simple_repeat Simple_repeat 1 69 0 360 286 127 24 chr9 19598566 19598779 -98263848 - L2 LINE L2 -15 3298 3064 197 347 14 0 chr9 19599971 19600043 -98262584 - L2 LINE L2 -344 2970 2898 1964 102 31 20 chr9 19601490 19601784 -98260843 - AluSx SINE Alu -15 297 1 21 36 0 0 chr9 19601969 19601997 -98260630 + AT_rich Low_complexity Low_complexity 1 28 0 4166 242 75 16 chr9 19602084 19603492 -98259135 + Zaphod DNA AcHobo 2532 4022 -9 189 107 0 0 chr9 19604395 19604423 -98258204 + (T)n Simple_repeat Simple_repeat 1 28 0 569 256 95 18 chr9 19604570 19604738 -98257889 + MIR SINE MIR 1 181 -81 223 280 147 21 chr9 19604742 19604885 -98257742 - L2 LINE L2 -176 3137 2977 264 184 233 68 chr9 19604968 19605071 -98257556 - MIR SINE MIR -50 212 93 449 282 60 6 chr9 19606259 19606733 -98255894 - L1M LINE L1 -745 5419 4918 344 282 83 68 chr9 19606947 19607089 -98255538 - L1M4 LINE L1 -1501 4714 4576 1862 140 41 0 chr9 19607089 19607403 -98255224 - AluSx SINE Alu 0 325 1 344 282 83 68 chr9 19607403 19607774 -98254853 - L1M4 LINE L1 -1639 4576 4192 562 285 79 70 chr9 19607901 19608408 -98254219 - L1MEc LINE L1 -3546 2669 2198 1792 180 0 0 chr9 19608526 19608820 -98253807 - AluJb SINE Alu -18 294 1 427 302 54 15 chr9 19609036 19609241 -98253386 - L1MEc LINE L1 -4865 1340 1128 378 226 163 0 chr9 19609283 19609473 -98253154 - L1MEc LINE L1 -3106 3109 2889 328 287 56 46 chr9 19609493 19609991 -98252636 - L1MEc LINE L1 -3461 2754 2252 21 0 0 0 chr9 19610102 19610123 -98252504 + AT_rich Low_complexity Low_complexity 1 21 0 1118 211 0 4 chr9 19610541 19610778 -98251849 + MER46A DNA MER2_type 1 236 0 595 280 50 69 chr9 19610814 19611353 -98251274 - L1MEc LINE L1 -5041 1164 636 1178 197 56 85 chr9 19611529 19611904 -98250723 - MLT1A1 LTR MaLR -1 364 1 695 200 7 0 chr9 19611904 19612039 -98250588 - MLT1A1-int LTR MaLR 0 1735 1600 706 346 88 26 chr9 19613853 19614353 -98248274 + L3 LINE CR1 1046 1576 -1 2156 118 0 3 chr9 19614389 19614686 -98247941 - AluSq SINE Alu -17 296 1 211 367 75 37 chr9 19614686 19614874 -98247753 - L2 LINE L2 -8 3264 3070 284 339 72 32 chr9 19615011 19615232 -98247395 - L2 LINE L2 -222 3050 2821 3223 255 139 23 chr9 19615779 19617204 -98245423 + L2 LINE L2 1723 3311 -2 22 0 0 0 chr9 19617486 19617508 -98245119 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 19617844 19617865 -98244762 + AT_rich Low_complexity Low_complexity 1 21 0 309 321 28 9 chr9 19618096 19618202 -98244425 - L2 LINE L2 -4 3268 3161 582 285 108 81 chr9 19618450 19618931 -98243696 - L2 LINE L2 -561 2753 2260 195 341 146 39 chr9 19618940 19619145 -98243482 - MIR SINE MIR -6 256 30 2564 222 14 0 chr9 19619420 19619991 -98242636 - L1MC3 LINE L1 -2 7783 7205 257 237 0 79 chr9 19620169 19620245 -98242382 - MIR SINE MIR -114 148 79 1839 102 15 19 chr9 19620648 19620914 -98241713 - AluSg SINE Alu -45 265 1 248 202 169 34 chr9 19623035 19623124 -98239503 + MIR SINE MIR 99 199 -63 833 190 11 0 chr9 19623243 19623422 -98239205 - L1MA7 LINE L1 -10 6281 6101 11618 117 30 68 chr9 19623423 19623997 -98238630 - Tigger1 DNA MER2_type -3 2415 1821 1972 159 0 28 chr9 19623997 19624318 -98238309 + AluSx SINE Alu 1 312 0 11618 117 30 68 chr9 19624318 19625845 -98236782 - Tigger1 DNA MER2_type -597 1821 392 7287 201 38 4 chr9 19626150 19627817 -98234810 + L1 LINE L1 3217 4939 -1207 336 48 0 0 chr9 19628628 19628670 -98233957 + (TG)n Simple_repeat Simple_repeat 1 42 0 288 308 103 0 chr9 19628679 19628786 -98233841 + MER117 DNA MER1_type 53 170 -27 774 220 83 49 chr9 19630170 19630434 -98232193 - ORSL DNA AcHobo -2 273 1 815 197 14 0 chr9 19631888 19632030 -98230597 - FRAM SINE Alu -32 144 1 608 262 0 37 chr9 19682072 19682259 -98180368 - MIR SINE MIR -70 192 13 2335 81 19 23 chr9 19682260 19682569 -98180058 - AluSx SINE Alu -4 308 1 224 365 100 6 chr9 19682708 19682878 -98179749 - MIR SINE MIR 0 262 77 211 319 32 11 chr9 19683493 19683587 -98179040 + MIR SINE MIR 20 115 -147 381 277 109 0 chr9 19683648 19683767 -98178860 - MIR SINE MIR -78 184 53 221 91 0 0 chr9 19683942 19683975 -98178652 - MIR SINE MIR -113 149 117 1815 150 46 0 chr9 19684133 19684413 -98178214 + AluJb SINE Alu 1 293 -19 2433 83 3 0 chr9 19684413 19684713 -98177914 + AluSp SINE Alu 1 301 -12 680 230 79 82 chr9 19684802 19685093 -98177534 + AluYa5 SINE Alu 4 293 -8 486 271 36 85 chr9 19685170 19685451 -98177176 - L2 LINE L2 0 3272 3006 237 296 44 97 chr9 19685561 19685767 -98176860 + L2 LINE L2 2889 3083 -189 2028 108 42 11 chr9 19685784 19686070 -98176557 - AluSx SINE Alu -17 295 1 612 247 251 4 chr9 19686752 19686995 -98175632 + MLT1H LTR MaLR 247 549 0 895 145 0 0 chr9 19687044 19687182 -98175445 + FRAM SINE Alu 38 175 -1 273 207 43 128 chr9 19687186 19687255 -98175372 + L1MC4a LINE L1 5814 5887 -1921 2350 85 7 10 chr9 19687255 19687560 -98175067 + AluSg SINE Alu 1 304 -6 273 207 43 128 chr9 19687560 19687580 -98175047 + L1MC4a LINE L1 5887 5907 -1901 2265 101 3 13 chr9 19687580 19687887 -98174740 + AluSx SINE Alu 1 304 -8 273 207 43 128 chr9 19687887 19687960 -98174667 + L1MC4a LINE L1 5907 5963 -1845 2592 62 0 0 chr9 19688139 19688443 -98174184 - AluY SINE Alu -7 304 1 605 289 6 0 chr9 19689409 19689565 -98173062 + MER45A DNA AcHobo 2 158 -20 320 207 231 8 chr9 19689738 19689867 -98172760 + MIR SINE MIR 30 191 -62 341 264 35 56 chr9 19690162 19690306 -98172321 - L2 LINE L2 -57 3256 3116 232 268 0 92 chr9 19690433 19690575 -98172052 + MIR SINE MIR 60 188 -74 234 191 0 0 chr9 19690871 19690918 -98171709 + (TGAA)n Simple_repeat Simple_repeat 2 48 0 213 39 0 0 chr9 19690922 19690948 -98171679 + (A)n Simple_repeat Simple_repeat 1 26 0 911 127 8 15 chr9 19690971 19691105 -98171522 + AluSq/x SINE Alu 1 133 -179 5700 153 33 11 chr9 19691120 19692303 -98170324 + L1MC2 LINE L1 5133 6343 -1 2281 96 7 7 chr9 19692351 19692652 -98169975 + AluSp SINE Alu 1 301 -12 1252 124 31 0 chr9 19693157 19693382 -98169245 - L1 LINE L1 -1657 4489 4258 296 267 14 0 chr9 19693534 19693613 -98169014 + MIR SINE MIR 81 161 -47 247 234 13 13 chr9 19693696 19693773 -98168854 - MIR SINE MIR -12 250 174 572 213 0 0 chr9 19693777 19693871 -98168756 - MER81 DNA DNA -1 113 20 297 167 91 0 chr9 19693884 19693950 -98168677 - MIR SINE MIR -111 151 80 329 306 62 14 chr9 19694542 19694686 -98167941 - MIR SINE MIR -110 152 2 188 284 122 34 chr9 19694693 19694841 -98167786 + MIR SINE MIR 76 236 -26 515 284 111 0 chr9 19694958 19695148 -98167479 - MIR SINE MIR -13 249 39 204 270 44 88 chr9 19695553 19695779 -98166848 - L2 LINE L2 -68 3204 2989 715 285 216 19 chr9 19697426 19698062 -98164565 - L2 LINE L2 -14 3299 2524 242 337 0 0 chr9 19698308 19698394 -98164233 - MIR SINE MIR -10 252 167 1982 166 63 44 chr9 19698523 19698674 -98163953 + L1MD2 LINE L1 5795 5942 -417 1947 137 7 14 chr9 19698674 19698992 -98163635 - AluSx SINE Alu 0 316 1 1982 166 63 44 chr9 19698992 19699184 -98163443 + L1MD2 LINE L1 5942 6129 -230 234 0 0 0 chr9 19699184 19699210 -98163417 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 261 0 0 0 chr9 19699209 19699238 -98163389 + (CA)n Simple_repeat Simple_repeat 1 29 0 1982 166 63 44 chr9 19699210 19699367 -98163260 + L1MD2 LINE L1 6129 6278 -81 608 116 26 71 chr9 19699367 19699522 -98163105 - MLT2B1 LTR ERVL 0 520 373 2306 104 0 0 chr9 19700060 19700349 -98162278 + AluSq SINE Alu 1 289 -24 24508 146 38 35 chr9 19700349 19704249 -98158378 - ERVL LTR ERVL -435 5329 1445 1468 184 17 109 chr9 19704249 19704651 -98157976 - MLT1A1 LTR MaLR 0 365 1 24508 146 38 35 chr9 19704651 19704737 -98157890 - ERVL LTR ERVL -4319 1445 1361 2172 128 6 13 chr9 19704737 19705049 -98157578 - AluSx SINE Alu -2 310 1 24508 146 38 35 chr9 19705049 19705071 -98157556 - ERVL LTR ERVL -4403 1361 1341 2463 99 0 3 chr9 19705071 19705383 -98157244 - AluSx SINE Alu -1 311 1 231 36 0 0 chr9 19705385 19705413 -98157214 + (TA)n Simple_repeat Simple_repeat 2 29 0 2160 70 38 28 chr9 19705413 19705700 -98156927 - AluY SINE Alu -21 290 1 300 116 130 0 chr9 19705700 19705769 -98156858 + Charlie5 DNA MER1_type 2510 2587 -25 2085 94 0 15 chr9 19705769 19706036 -98156591 - AluSq SINE Alu -50 263 1 24508 146 38 35 chr9 19706036 19707248 -98155379 - ERVL LTR ERVL -4422 1342 25 2036 59 0 0 chr9 19707249 19707486 -98155141 + AluY SINE Alu 1 237 -74 26 0 0 0 chr9 19707541 19707567 -98155060 + AT_rich Low_complexity Low_complexity 1 26 0 328 306 0 19 chr9 19707668 19707776 -98154851 - MIR SINE MIR -70 138 33 2241 109 0 0 chr9 19707780 19708094 -98154533 - AluSx SINE Alu 0 314 1 189 0 0 0 chr9 19708094 19708115 -98154512 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 570 128 0 0 chr9 19708125 19708203 -98154424 - FLAM_A SINE Alu -32 110 33 1661 179 133 96 chr9 19708661 19709400 -98153227 - L1MC5 LINE L1 -30 7931 7166 1038 172 6 0 chr9 19709402 19709565 -98153062 - AluJb SINE Alu -18 294 131 1295 186 55 133 chr9 19709565 19709794 -98152833 - L1MC5 LINE L1 -793 7168 6923 1779 134 34 41 chr9 19709794 19710085 -98152542 + AluJb SINE Alu 1 289 -23 1295 186 55 133 chr9 19710085 19710456 -98152171 - L1MC5 LINE L1 -1038 6923 6615 2606 143 66 75 chr9 19710478 19711115 -98151512 + L1MC2 LINE L1 5714 6344 0 229 254 0 15 chr9 19711111 19711178 -98151449 - L1MC4a LINE L1 -1213 6595 6530 * 1694 170 32 66 chr9 19711293 19711458 -98151169 - MLT1A1 LTR MaLR 0 365 196 1975 151 0 19 chr9 19711458 19711775 -98150852 + AluSx SINE Alu 1 311 -1 1694 170 32 66 chr9 19711775 19711986 -98150641 - MLT1A1 LTR MaLR -169 196 2 488 291 81 61 chr9 19712024 19712319 -98150308 - L1MC4a LINE L1 -1445 6363 6063 201 201 97 142 chr9 19712560 19712599 -98150028 - MIR SINE MIR -26 236 197 2109 139 0 0 chr9 19712599 19712900 -98149727 - AluSx SINE Alu -11 301 1 201 201 97 142 chr9 19712900 19712994 -98149633 - MIR SINE MIR -65 197 109 337 303 76 0 chr9 19713025 19713144 -98149483 - L2 LINE L2 0 3313 3186 292 204 51 10 chr9 19713399 19713497 -98149130 - L1ME4a LINE L1 -12 6109 6008 2140 129 3 16 chr9 19713500 19713830 -98148797 - AluSx SINE Alu 0 312 3 342 285 172 5 chr9 19714306 19714527 -98148100 + MIR SINE MIR 5 262 0 467 281 34 79 chr9 19714852 19714928 -98147699 + MIR SINE MIR 2 80 -128 1836 144 0 24 chr9 19714928 19715220 -98147407 - AluJb SINE Alu -22 290 6 467 281 34 79 chr9 19715220 19715350 -98147277 + MIR SINE MIR 80 201 -7 806 284 136 13 chr9 19715416 19715807 -98146820 + MLT1K LTR MaLR 148 586 -2 291 265 8 51 chr9 19715808 19715925 -98146702 + MIR SINE MIR 148 259 -3 546 276 186 69 chr9 19715934 19716002 -98146625 - L1ME4a LINE L1 -20 6101 6042 1855 151 47 27 chr9 19716002 19716301 -98146326 - AluJb SINE Alu -7 305 1 546 276 186 69 chr9 19716301 19716611 -98146016 - L1ME4a LINE L1 -79 6042 5770 234 0 0 0 chr9 19716611 19716637 -98145990 + (TA)n Simple_repeat Simple_repeat 1 26 0 1927 163 3 3 chr9 19716638 19716932 -98145695 - AluJo SINE Alu -10 302 9 546 276 186 69 chr9 19716932 19717002 -98145625 - L1ME4a LINE L1 -350 5771 5597 291 286 0 0 chr9 19717525 19717595 -98145032 + L1M4 LINE L1 4285 4354 -1792 291 278 118 42 chr9 19718298 19718442 -98144185 - MIR3 SINE MIR -37 171 17 317 316 107 8 chr9 19719021 19719223 -98143404 - MIR SINE MIR -20 242 16 316 269 11 32 chr9 19719371 19719464 -98143163 + MIR SINE MIR 84 174 -88 230 281 0 0 chr9 19719491 19719548 -98143079 + (TTA)n Simple_repeat Simple_repeat 2 58 0 199 351 0 27 chr9 19720118 19720192 -98142435 + L2 LINE L2 2686 2757 -557 191 366 204 5 chr9 19720212 19720403 -98142224 - MIR SINE MIR -8 254 26 303 299 35 40 chr9 19720675 19720849 -98141778 + L2 LINE L2 1677 1849 -1465 200 225 0 0 chr9 19721212 19721252 -98141375 + CT-rich Low_complexity Low_complexity 1 40 0 383 290 54 120 chr9 19721562 19721645 -98140982 + L2 LINE L2 2853 2940 -332 2239 128 3 0 chr9 19721645 19721949 -98140678 - AluSx SINE Alu -7 305 1 383 290 54 120 chr9 19721949 19722306 -98140321 + L2 LINE L2 2940 3264 -8 2381 110 0 0 chr9 19722328 19722629 -98139998 + AluSx SINE Alu 1 301 -11 277 173 120 0 chr9 19723660 19723735 -98138892 + MLT1K LTR MaLR 501 584 -4 452 283 145 31 chr9 19724520 19724556 -98138071 - MIR SINE MIR -18 244 213 2185 116 6 6 chr9 19724556 19724867 -98137760 - AluSx SINE Alu -1 311 1 452 283 145 31 chr9 19724867 19724989 -98137638 - MIR SINE MIR -49 213 68 1900 162 0 7 chr9 19725567 19725864 -98136763 + AluSx SINE Alu 1 295 -17 2499 109 11 16 chr9 19725883 19726249 -98136378 + THE1B LTR MaLR 1 364 0 573 88 0 0 chr9 19726585 19726665 -98135962 + (TA)n Simple_repeat Simple_repeat 1 80 0 420 294 56 56 chr9 19726674 19726926 -98135701 - L1M4 LINE L1 -3663 2483 2232 1178 185 4 53 chr9 19727185 19727448 -98135179 - AluJo SINE Alu 0 312 76 808 147 0 0 chr9 19727475 19727591 -98135036 - FLAM_C SINE Alu -17 116 1 297 277 45 18 chr9 19727642 19727754 -98134873 - L1ME3 LINE L1 -211 5934 5820 505 123 0 0 chr9 19727819 19727892 -98134735 - AluS SINE Alu -14 296 224 1249 266 75 102 chr9 19727899 19728378 -98134249 - L1ME3 LINE L1 -1158 4971 4481 2252 112 3 0 chr9 19728378 19728673 -98133954 - AluSq SINE Alu -12 301 6 1249 266 75 102 chr9 19728673 19729091 -98133536 - L1ME3 LINE L1 -1648 4481 4053 2500 71 3 7 chr9 19729091 19729401 -98133226 - AluY SINE Alu -2 309 1 1249 266 75 102 chr9 19729401 19729937 -98132690 - L1ME3 LINE L1 -2076 4053 3504 2369 64 42 0 chr9 19729937 19730220 -98132407 + AluY SINE Alu 1 295 -16 1249 266 75 102 chr9 19730220 19730272 -98132355 - L1ME3 LINE L1 -2625 3504 3452 189 0 0 0 chr9 19730272 19730293 -98132334 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1249 266 75 102 chr9 19730293 19730315 -98132312 - L1ME3 LINE L1 -2677 3452 3431 2011 148 0 0 chr9 19730315 19730598 -98132029 - AluSx SINE Alu -29 283 1 1249 266 75 102 chr9 19730598 19730798 -98131829 - L1ME3 LINE L1 -2698 3431 3306 1676 150 79 0 chr9 19730823 19731090 -98131537 + AluSq SINE Alu 9 296 -17 348 304 30 22 chr9 19731101 19731236 -98131391 - L1ME3 LINE L1 -3274 2855 2720 993 107 0 0 chr9 19731251 19731382 -98131245 - AluSg SINE Alu -179 131 1 570 318 57 24 chr9 19731395 19732011 -98130616 - L1ME3 LINE L1 -3401 2728 2093 1443 184 69 21 chr9 19732092 19732380 -98130247 + AluJo SINE Alu 1 302 0 991 114 6 6 chr9 19732386 19732553 -98130074 + (GGAA)n Simple_repeat Simple_repeat 3 169 0 376 305 138 18 chr9 19732894 19733100 -98129527 - L1ME3 LINE L1 -4440 1689 1379 1894 153 28 0 chr9 19733105 19733392 -98129235 + AluJb SINE Alu 1 295 -17 253 321 4 80 chr9 19733392 19733421 -98129206 - HAL1 LINE L1 -898 1609 1579 3898 199 17 63 chr9 19733421 19734437 -98128190 + LTR5 LTR ERVK 1 969 0 253 321 4 80 chr9 19734437 19734530 -98128097 - HAL1 LINE L1 -928 1579 1480 1765 127 0 8 chr9 19734530 19734817 -98127810 - AluSx SINE Alu 0 327 43 253 321 4 80 chr9 19734817 19734954 -98127673 - HAL1 LINE L1 -1027 1480 1368 * 1253 240 36 61 chr9 19734940 19735157 -98127470 - L1ME3 LINE L1 -4902 1217 996 549 100 0 0 chr9 19735157 19735237 -98127390 + MADE1 DNA Mariner 1 80 0 1253 240 36 61 chr9 19735237 19735394 -98127233 - L1ME3 LINE L1 -5123 996 837 315 0 0 0 chr9 19735394 19735429 -98127198 + (TG)n Simple_repeat Simple_repeat 1 35 0 1253 240 36 61 chr9 19735429 19735727 -98126900 - L1ME3 LINE L1 -5282 837 561 2088 122 40 0 chr9 19736006 19736181 -98126446 - AluSq SINE Alu -5 308 115 224 89 0 22 chr9 19736181 19736226 -98126401 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 2088 122 40 0 chr9 19736226 19736346 -98126281 - AluSq SINE Alu -198 115 1 267 295 26 0 chr9 19736440 19736518 -98126109 - MIR SINE MIR -103 159 80 272 288 134 81 chr9 19737083 19737345 -98125282 - L2 LINE L2 -5 3267 2976 2103 125 0 58 chr9 19737345 19737672 -98124955 + AluSg SINE Alu 1 308 -2 272 288 134 81 chr9 19737672 19737805 -98124822 - L2 LINE L2 -296 2976 2851 1842 137 39 11 chr9 19738025 19738309 -98124318 + AluSx SINE Alu 1 292 -20 220 281 94 42 chr9 19738904 19739000 -98123627 + MIR SINE MIR 19 119 -143 29 0 0 0 chr9 19739852 19739881 -98122746 + GC_rich Low_complexity Low_complexity 1 29 0 200 170 21 21 chr9 19740992 19741039 -98121588 + (TTCA)n Simple_repeat Simple_repeat 4 50 0 181 243 100 14 chr9 19741041 19741111 -98121516 - L2 LINE L2 -60 3212 3137 307 274 9 57 chr9 19741374 19741480 -98121147 + MIR SINE MIR 5 105 -157 1375 143 5 27 chr9 19741942 19742165 -98120462 + AluJo SINE Alu 88 305 -7 2377 93 10 6 chr9 19742436 19742748 -98119879 - AluSp SINE Alu 0 313 1 1072 302 39 18 chr9 19742903 19743566 -98119061 - L1ME3A LINE L1 -289 5881 5204 807 140 39 39 chr9 19743601 19743779 -98118848 - L1MA7 LINE L1 0 6291 6114 592 174 8 8 chr9 19743925 19744057 -98118570 + CT-rich Low_complexity Low_complexity 1 132 0 506 291 29 87 chr9 19744058 19744119 -98118508 - L1ME3A LINE L1 -1047 5099 5036 2234 131 0 0 chr9 19744119 19744431 -98118196 - AluSx SINE Alu 0 312 1 506 291 29 87 chr9 19744431 19744771 -98117856 - L1ME3A LINE L1 -1110 5036 4746 953 280 63 63 chr9 19744771 19745136 -98117491 + MLT1J1 LTR MaLR 1 368 -78 2350 105 7 0 chr9 19745136 19745441 -98117186 - AluSc SINE Alu -2 307 1 953 280 63 63 chr9 19745441 19745521 -98117106 + MLT1J1 LTR MaLR 367 446 0 506 291 29 87 chr9 19745521 19745765 -98116862 - L1ME3A LINE L1 -1400 4746 4490 33 25 0 0 chr9 19745798 19745838 -98116789 + AT_rich Low_complexity Low_complexity 1 40 0 280 290 56 0 chr9 19745970 19746077 -98116550 + MER94 DNA DNA 19 131 -3 687 234 68 35 chr9 19746194 19746422 -98116205 - MIR SINE MIR -10 252 12 213 269 202 17 chr9 19747044 19747163 -98115464 + MIR SINE MIR 48 188 -74 375 233 56 11 chr9 19747855 19747945 -98114682 - MER91A DNA MER1_type -99 97 4 205 272 175 48 chr9 19748298 19748401 -98114226 + L2 LINE L2 3188 3303 -10 558 236 0 0 chr9 19748656 19748800 -98113827 + (TCCA)n Simple_repeat Simple_repeat 1 144 0 270 288 104 16 chr9 19748816 19748941 -98113686 - L2 LINE L2 -1 3271 3136 183 301 181 0 chr9 19749091 19749174 -98113453 - L2 LINE L2 -5 3308 3211 994 136 39 0 chr9 19749444 19749599 -98113028 + FAM SINE Alu 12 172 -13 425 345 40 6 chr9 19750830 19751004 -98111623 + MIR SINE MIR 47 226 -36 269 327 152 10 chr9 19751392 19751695 -98110932 + L2 LINE L2 2401 2746 -568 381 324 71 12 chr9 19751806 19751976 -98110651 - MER5A DNA MER1_type 0 189 10 915 211 11 16 chr9 19752286 19752471 -98110156 - MER5A DNA MER1_type -5 184 1 1846 165 7 3 chr9 19752475 19752772 -98109855 - AluJb SINE Alu -13 299 2 276 380 29 7 chr9 19752781 19752918 -98109709 + L2 LINE L2 2868 3007 -265 330 169 0 0 chr9 19753962 19754027 -98108600 + CT-rich Low_complexity Low_complexity 1 65 0 815 157 0 0 chr9 19754537 19754652 -98107975 + FLAM_C SINE Alu 1 115 -18 545 0 0 15 chr9 19754653 19754719 -98107908 + (TAGA)n Simple_repeat Simple_repeat 1 65 0 1001 229 28 5 chr9 19754982 19755196 -98107431 - MER20 DNA MER1_type 0 219 1 386 315 68 24 chr9 19755238 19755489 -98107138 + Tigger8 DNA MER2_type 69 330 -336 192 317 106 73 chr9 19755964 19756087 -98106540 - L2 LINE L2 0 3272 3146 227 301 242 13 chr9 19756094 19756247 -98106380 + MER91A DNA MER1_type 2 189 -7 874 295 51 0 chr9 19758707 19758944 -98103683 + MIR SINE MIR 6 254 -8 548 246 38 60 chr9 19760344 19760588 -98102039 + MIR SINE MIR 12 256 -6 201 268 71 0 chr9 19760653 19760709 -98101918 + MIR SINE MIR 85 144 -118 402 239 68 26 chr9 19761277 19761394 -98101233 + MIR SINE MIR 20 141 -67 2179 99 13 3 chr9 19761419 19761722 -98100905 + AluSx SINE Alu 6 311 -1 737 233 52 7 chr9 19761725 19761929 -98100698 + MIR SINE MIR 34 255 -7 205 271 51 0 chr9 19762747 19762806 -98099821 + MIR SINE MIR 84 145 -63 2145 95 7 3 chr9 19762863 19763158 -98099469 + AluSg SINE Alu 1 296 -14 340 350 29 7 chr9 19763182 19763319 -98099308 + MIR SINE MIR 86 225 -37 305 282 60 17 chr9 19764291 19764408 -98098219 - MIR SINE MIR -35 227 106 230 244 33 33 chr9 19764734 19764824 -98097803 + GA-rich Low_complexity Low_complexity 5 94 0 423 318 39 34 chr9 19765502 19765735 -98096892 - L1MC4a LINE L1 -1910 5898 5665 195 313 45 80 chr9 19765841 19765953 -98096674 - L2 LINE L2 -1034 2280 2173 233 221 15 59 chr9 19766094 19766162 -98096465 + L2 LINE L2 3208 3272 0 409 298 43 14 chr9 19766540 19766681 -98095946 - MIR SINE MIR -40 222 78 2185 99 0 0 chr9 19766713 19767023 -98095604 - AluSx SINE Alu 0 310 1 214 255 0 0 chr9 19767710 19767761 -98094866 + (TG)n Simple_repeat Simple_repeat 2 52 0 920 195 105 0 chr9 19768977 19769167 -98093460 + MER6B DNA MER2_type 1 210 0 192 264 46 46 chr9 19770409 19770496 -98092131 + MIR SINE MIR 31 117 -145 210 37 0 0 chr9 19770724 19770751 -98091876 + (TTTTA)n Simple_repeat Simple_repeat 3 29 0 307 305 199 0 chr9 19771328 19771479 -98091148 + MIR SINE MIR 63 243 -19 306 295 81 50 chr9 19772986 19773244 -98089383 + L2 LINE L2 2539 2804 -510 2489 68 0 6 chr9 19773716 19774027 -98088600 + AluSc SINE Alu 1 309 0 2712 7 0 0 chr9 19774039 19774338 -98088289 + AluY SINE Alu 1 299 -12 358 247 24 12 chr9 19774644 19774729 -98087898 + L2 LINE L2 3227 3312 -1 441 293 48 2 chr9 19774895 19775095 -98087532 + MIR3 SINE MIR 47 254 -8 286 307 268 21 chr9 19776135 19776301 -98086326 + L3 LINE CR1 963 1087 -490 2313 93 7 3 chr9 19776301 19776611 -98086016 + AluSx SINE Alu 2 312 0 286 307 268 21 chr9 19776611 19776724 -98085903 + L3 LINE CR1 1087 1311 -266 560 248 12 6 chr9 19777547 19777874 -98084753 + (TGGA)n Simple_repeat Simple_repeat 1 328 0 283 291 105 26 chr9 19778558 19778778 -98083849 + MIR3 SINE MIR 4 255 -7 219 276 0 0 chr9 19778934 19778992 -98083635 + L2 LINE L2 3215 3272 0 254 188 0 0 chr9 19779067 19779115 -98083512 + MIR SINE MIR 188 235 -27 652 255 157 74 chr9 19779495 19779893 -98082734 + L2 LINE L2 2244 2608 -705 2258 113 0 0 chr9 19779893 19780202 -98082425 + AluSx SINE Alu 4 312 0 652 255 157 74 chr9 19780202 19780366 -98082261 + L2 LINE L2 2608 2757 -556 844 158 0 0 chr9 19780366 19780499 -98082128 - FLAM_C SINE Alu 0 133 1 652 255 157 74 chr9 19780499 19780884 -98081743 + L2 LINE L2 2757 3300 -13 2254 104 0 0 chr9 19780886 19781195 -98081432 + AluSg SINE Alu 1 309 -1 47 19 0 0 chr9 19781543 19781597 -98081030 + GC_rich Low_complexity Low_complexity 1 54 0 478 299 51 0 chr9 19782014 19782171 -98080456 - MIR SINE MIR -92 170 6 285 354 55 18 chr9 19782657 19782821 -98079806 - MIR SINE MIR -11 251 82 404 284 53 62 chr9 19783403 19783611 -98079016 - L2 LINE L2 -219 3053 2848 455 257 40 46 chr9 19784078 19784230 -98078397 - MIR SINE MIR -88 174 24 1861 53 0 4 chr9 19784345 19784572 -98078055 + AluY SINE Alu 77 302 -9 468 285 95 0 chr9 19785019 19785177 -98077450 + MIR SINE MIR 80 252 -10 481 279 49 77 chr9 19785400 19785489 -98077138 - MIR SINE MIR -20 242 159 2287 98 0 3 chr9 19785489 19785795 -98076832 - AluSx SINE Alu -1 311 7 481 279 49 77 chr9 19785795 19785888 -98076739 - MIR SINE MIR -103 159 65 425 315 67 6 chr9 19785909 19786074 -98076553 - MIR SINE MIR -54 208 34 413 321 14 36 chr9 19786916 19787056 -98075571 + MER91A DNA MER1_type 2 138 -58 250 211 133 11 chr9 19787232 19787322 -98075305 - MIR SINE MIR -44 218 118 * 400 301 0 27 chr9 19787320 19787466 -98075161 - L2 LINE L2 -165 3107 2966 762 298 5 0 chr9 19788060 19788251 -98074376 + MIR SINE MIR 65 256 -6 490 318 51 42 chr9 19788393 19788726 -98073901 - L2 LINE L2 -468 2846 2511 225 254 0 28 chr9 19789701 19789772 -98072855 + (CA)n Simple_repeat Simple_repeat 1 69 0 21 0 0 0 chr9 19791711 19791732 -98070895 + GC_rich Low_complexity Low_complexity 1 21 0 272 173 24 47 chr9 19792200 19792327 -98070300 + (CTGGGG)n Simple_repeat Simple_repeat 4 127 0 450 300 126 22 chr9 19792532 19792755 -98069872 - MIR SINE MIR 0 262 17 189 257 133 0 chr9 19793329 19793434 -98069193 + L2 LINE L2 2379 2497 -817 204 335 125 23 chr9 19793669 19793973 -98068654 + L2 LINE L2 2820 3154 -118 214 264 190 33 chr9 19795753 19795874 -98066753 - L3 LINE CR1 -9 1568 1429 450 323 205 41 chr9 19795969 19796221 -98066406 - L3 LINE CR1 -467 1110 901 2254 67 3 0 chr9 19796221 19796558 -98066069 - AluSp SINE Alu 0 338 1 450 323 205 41 chr9 19796558 19797017 -98065610 - L3 LINE CR1 -676 901 281 453 248 74 22 chr9 19797535 19797683 -98064944 - MIR3 SINE MIR -25 183 28 182 304 101 14 chr9 19797718 19797787 -98064840 - L3 LINE CR1 -1222 355 281 181 237 0 0 chr9 19797842 19797880 -98064747 - MIR3 SINE MIR -8 200 163 289 277 0 0 chr9 19798102 19798167 -98064460 - MIR SINE MIR -63 145 81 260 310 121 0 chr9 19798391 19798507 -98064120 - MIR3 SINE MIR -65 143 14 208 255 0 0 chr9 19798947 19798998 -98063629 + (CA)n Simple_repeat Simple_repeat 1 51 0 387 320 187 24 chr9 19799693 19800024 -98062603 - L2 LINE L2 0 3272 2888 280 250 116 62 chr9 19800061 19800173 -98062454 - L2 LINE L2 -625 2689 2572 411 219 16 32 chr9 19801139 19801262 -98061365 + AluJb SINE Alu 167 287 -25 4285 178 29 39 chr9 19801287 19801510 -98061117 + L1MB3 LINE L1 5110 5334 -849 1926 127 3 3 chr9 19801510 19801828 -98060799 + AluSx SINE Alu 1 318 0 4285 178 29 39 chr9 19801828 19801987 -98060640 + L1MB3 LINE L1 5334 5493 -690 212 0 36 0 chr9 19801987 19802015 -98060612 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4285 178 29 39 chr9 19802015 19802692 -98059935 + L1MB3 LINE L1 5493 6182 -1 2141 108 10 16 chr9 19802766 19803080 -98059547 + AluSx SINE Alu 1 312 0 1585 188 64 0 chr9 19803296 19803578 -98059049 - AluJo SINE Alu -12 300 1 704 195 24 0 chr9 19803880 19804003 -98058624 - FLAM_A SINE Alu -7 126 1 1942 141 3 0 chr9 19804047 19804344 -98058283 + AluSx SINE Alu 1 298 -14 743 274 8 46 chr9 19804801 19805064 -98057563 - L2 LINE L2 -201 3071 2819 218 318 167 8 chr9 19805331 19805463 -98057164 + MIR SINE MIR 60 212 -50 346 322 119 41 chr9 19805823 19806118 -98056509 + L2 LINE L2 2643 2960 -354 2125 118 0 0 chr9 19806199 19806488 -98056139 + AluSx SINE Alu 1 287 -25 196 129 0 0 chr9 19806488 19806519 -98056108 + (TAAA)n Simple_repeat Simple_repeat 1 180 0 230 229 0 0 chr9 19806519 19806567 -98056060 - MIR SINE MIR -98 164 117 604 272 121 9 chr9 19806733 19806957 -98055670 + MIR SINE MIR 2 250 -12 487 240 60 40 chr9 19807214 19807364 -98055263 + MIR SINE MIR 20 172 -90 292 216 81 72 chr9 19807562 19807673 -98054954 - Charlie8 DNA MER1_type -2208 209 98 786 196 204 13 chr9 19807683 19807908 -98054719 + L1ME3A LINE L1 5895 6162 -8 2052 129 0 7 chr9 19808305 19808615 -98054012 + AluSx SINE Alu 1 308 -4 1852 113 0 0 chr9 19809688 19809936 -98052691 - AluSg SINE Alu -28 282 35 264 249 126 80 chr9 19809950 19810181 -98052446 - MIR SINE MIR -5 257 1 558 0 0 0 chr9 19811868 19811930 -98050697 + (TG)n Simple_repeat Simple_repeat 2 63 0 197 308 0 0 chr9 19813136 19813188 -98049439 - L2 LINE L2 -14 3258 3207 387 271 157 52 chr9 19813340 19813803 -98048824 + L2 LINE L2 2620 3255 -17 248 281 10 8 chr9 19814168 19814255 -98048372 + MIR SINE MIR 52 139 -69 197 277 45 51 chr9 19814456 19814633 -98047994 + L2 LINE L2 2892 3067 -205 347 303 28 61 chr9 19814700 19814875 -98047752 + MIR SINE MIR 3 170 -63 207 319 70 32 chr9 19815024 19815209 -98047418 + L2 LINE L2 2894 3085 -187 292 267 47 0 chr9 19815225 19815311 -98047316 - MIR SINE MIR -75 187 98 492 254 67 30 chr9 19816017 19816182 -98046445 + MIR SINE MIR 79 249 -13 228 200 25 75 chr9 19816548 19816628 -98045999 - L2 LINE L2 0 3272 3197 227 331 115 31 chr9 19816629 19816759 -98045868 - MER5A DNA MER1_type 0 189 49 1789 166 23 0 chr9 19817344 19817646 -98044981 + AluJb SINE Alu 4 312 0 848 176 0 0 chr9 19817662 19817793 -98044834 + FLAM_A SINE Alu 1 131 -2 219 250 29 29 chr9 19817892 19817960 -98044667 + L2 LINE L2 2994 3061 -252 1639 152 22 4 chr9 19818197 19818497 -98044130 - AluSx SINE Alu 0 305 1 541 128 13 0 chr9 19818676 19818754 -98043873 - AluSq/x SINE Alu -195 117 39 274 296 0 0 chr9 19818761 19818842 -98043785 + LTR16C LTR ERVL 408 488 -3 201 333 0 0 chr9 19819013 19819073 -98043554 + L2 LINE L2 3204 3263 -9 1615 133 56 4 chr9 19819231 19819501 -98043126 + AluJb SINE Alu 1 284 -28 192 160 0 0 chr9 19819501 19819546 -98043081 + (TA)n Simple_repeat Simple_repeat 2 46 0 1580 147 0 102 chr9 19819556 19819690 -98042937 + AluSx SINE Alu 2 148 -184 2230 109 0 0 chr9 19819690 19819993 -98042634 + AluSx SINE Alu 1 303 -9 1580 147 0 102 chr9 19819993 19820221 -98042406 + AluSx SINE Alu 148 332 0 2028 113 10 13 chr9 19820231 19820540 -98042087 + AluSx SINE Alu 1 308 -4 941 191 48 0 chr9 19821064 19821252 -98041375 + MER20 DNA MER1_type 2 198 -21 451 301 83 21 chr9 19821344 19821537 -98041090 + MIR SINE MIR 46 250 -12 1936 177 25 32 chr9 19821589 19821996 -98040631 + MLT1C LTR MaLR 59 462 -5 353 284 32 0 chr9 19823067 19823162 -98039465 + MIR SINE MIR 41 138 -124 378 314 64 16 chr9 19823252 19823440 -98039187 - MIR SINE MIR -6 256 60 817 117 8 0 chr9 19823444 19823564 -98039063 - FRAM SINE Alu -11 165 45 255 170 0 0 chr9 19826916 19826963 -98035664 + A-rich Low_complexity Low_complexity 1 47 0 416 293 70 6 chr9 19828172 19828329 -98034298 - MIR SINE MIR -76 186 20 25 51 0 0 chr9 19829578 19829617 -98033010 + AT_rich Low_complexity Low_complexity 1 39 0 608 161 0 0 chr9 19829617 19829710 -98032917 - FLAM_C SINE Alu -19 124 32 3559 115 2 2 chr9 19830498 19831011 -98031616 - MER75 DNA T2_type 0 514 2 525 301 143 19 chr9 19831661 19831877 -98030750 + MIR SINE MIR 20 262 0 326 355 63 7 chr9 19831932 19832100 -98030527 - MIR3 SINE MIR -21 187 12 295 262 0 0 chr9 19833696 19833757 -98028870 + MIR SINE MIR 87 147 -115 213 340 57 63 chr9 19833892 19834051 -98028576 - MIR3 SINE MIR -23 185 28 932 281 31 12 chr9 19834172 19834428 -98028199 - MIR SINE MIR 0 262 2 243 88 0 0 chr9 19836751 19836785 -98025842 + (A)n Simple_repeat Simple_repeat 1 34 0 21 0 0 0 chr9 19838213 19838234 -98024393 + AT_rich Low_complexity Low_complexity 1 21 0 194 250 133 0 chr9 19838759 19838819 -98023808 - MIR SINE MIR -11 251 184 313 234 81 102 chr9 19839341 19839541 -98023086 - L1ME4a LINE L1 -4 6117 5914 213 39 0 0 chr9 19839541 19839567 -98023060 + (TA)n Simple_repeat Simple_repeat 1 26 0 313 234 81 102 chr9 19839567 19839837 -98022790 - L1ME4a LINE L1 -207 5914 5657 1847 140 0 11 chr9 19840183 19840468 -98022159 + AluSx SINE Alu 1 282 -30 246 62 0 0 chr9 19840471 19840503 -98022124 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 27 29 0 0 chr9 19840790 19840824 -98021803 + AT_rich Low_complexity Low_complexity 1 34 0 25 0 0 0 chr9 19841194 19841219 -98021408 + AT_rich Low_complexity Low_complexity 1 25 0 844 174 0 32 chr9 19841222 19841377 -98021250 + AluJo SINE Alu 1 150 -162 1284 237 17 36 chr9 19841382 19841740 -98020887 - LTR27 LTR ERV1 -2 634 284 748 219 0 18 chr9 19841720 19841889 -98020738 - LTR28 LTR ERV1 -854 166 1 * 856 188 6 0 chr9 19841889 19842049 -98020578 + AluJo SINE Alu 147 307 -5 297 0 0 0 chr9 19842102 19842135 -98020492 + (CA)n Simple_repeat Simple_repeat 2 34 0 573 259 121 26 chr9 19843501 19843733 -98018894 + MIR SINE MIR 4 257 -5 2387 196 12 10 chr9 19843861 19844372 -98018255 - L1MB7 LINE L1 -16 6168 5657 419 295 60 44 chr9 19845386 19845569 -98017058 + MIR SINE MIR 77 262 0 469 280 25 19 chr9 19845840 19845997 -98016630 + MIR SINE MIR 10 167 -95 225 286 114 19 chr9 19846065 19846170 -98016457 + MER20B DNA MER1_type 62 176 -607 351 200 114 29 chr9 19846719 19846859 -98015768 - L1ME4a LINE L1 -3 6118 5967 410 305 142 11 chr9 19848920 19849110 -98013517 + MIR SINE MIR 20 234 -28 331 314 196 29 chr9 19849457 19850119 -98012508 + L1MEd LINE L1 44 816 -5303 2609 108 59 5 chr9 19850126 19850532 -98012095 - MSTA LTR MaLR 0 428 1 534 270 100 32 chr9 19850537 19850848 -98011779 + L1ME3A LINE L1 5610 5941 -229 2186 149 6 3 chr9 19851220 19851556 -98011071 + MER1B DNA MER1_type 1 337 0 1539 115 152 7 chr9 19852135 19852405 -98010222 - AluSg1 SINE Alu 0 309 1 218 313 78 39 chr9 19852898 19853026 -98009601 + MIR SINE MIR 6 138 -124 657 191 22 122 chr9 19853078 19853308 -98009319 - MIR SINE MIR -11 251 45 2139 50 0 53 chr9 19853383 19853712 -98008915 - AluY SINE Alu 0 313 1 452 310 28 7 chr9 19853991 19854133 -98008494 - MIR SINE MIR -110 152 8 503 323 0 31 chr9 19854683 19854844 -98007783 + MIR SINE MIR 23 178 -84 4321 139 21 56 chr9 19854846 19855495 -98007132 + L1PB4 LINE L1 5362 5977 -179 2221 105 0 0 chr9 19855495 19855791 -98006836 + AluSq SINE Alu 1 296 -17 4321 139 21 56 chr9 19855791 19855963 -98006664 + L1PB4 LINE L1 5977 6154 -2 230 338 0 0 chr9 19855974 19856048 -98006579 + MIR SINE MIR 186 259 -3 21 0 0 0 chr9 19857480 19857501 -98005126 + AT_rich Low_complexity Low_complexity 1 21 0 259 264 146 41 chr9 19857905 19858082 -98004545 - MIR SINE MIR -57 151 4 218 341 56 16 chr9 19858523 19858649 -98003978 + MIR3 SINE MIR 78 208 0 595 274 19 6 chr9 19859512 19859669 -98002958 - MER5B DNA MER1_type -18 160 2 28 0 0 0 chr9 19859795 19859823 -98002804 + AT_rich Low_complexity Low_complexity 1 28 0 1629 195 7 10 chr9 19859823 19860131 -98002496 - AluJb SINE Alu -5 307 1 394 55 0 0 chr9 19860843 19860898 -98001729 - L1PA6 LINE L1 -3 6151 6097 3099 87 11 104 chr9 19861064 19861593 -98001034 - LTR12 LTR ERV1 -234 480 1 2194 103 0 3 chr9 19862019 19862311 -98000316 + AluSx SINE Alu 1 291 -21 24 67 0 0 chr9 19862406 19862451 -98000176 + AT_rich Low_complexity Low_complexity 1 45 0 766 262 109 14 chr9 19862617 19862838 -97999789 + MIR SINE MIR 11 252 -10 2233 110 10 3 chr9 19863055 19863364 -97999263 - AluSx SINE Alu -1 311 1 362 204 68 23 chr9 19863728 19863816 -97998811 + MIR SINE MIR 168 259 -3 198 0 0 0 chr9 19864313 19864335 -97998292 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1634 163 134 25 chr9 19864624 19865071 -97997556 + LTR54B LTR ERV1 1 496 -2 358 299 130 0 chr9 19866815 19866969 -97995658 - MIR SINE MIR 0 262 89 345 223 176 40 chr9 19868945 19869093 -97993534 + MLT1H LTR MaLR 379 546 -3 565 180 168 43 chr9 19869351 19869512 -97993115 - MER5A DNA MER1_type 0 189 9 1811 146 124 64 chr9 19869539 19869943 -97992684 - MSTA LTR MaLR 0 428 1 261 209 191 36 chr9 19870483 19870593 -97992034 - L2 LINE L2 -1 3271 3145 353 237 20 96 chr9 19872491 19872689 -97989938 + L1ME4a LINE L1 5813 5995 -126 21 0 0 0 chr9 19872708 19872729 -97989898 + AT_rich Low_complexity Low_complexity 1 21 0 354 274 124 24 chr9 19873308 19873688 -97988939 - L1M4 LINE L1 -3527 2619 2202 1834 175 0 10 chr9 19873761 19874070 -97988557 - AluJb SINE Alu -6 306 1 180 0 0 0 chr9 19874219 19874239 -97988388 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2191 114 0 0 chr9 19874252 19874549 -97988078 - AluSg SINE Alu -11 299 3 204 111 0 0 chr9 19876279 19876315 -97986312 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 802 125 0 0 chr9 19876949 19877061 -97985566 - FRAM SINE Alu -19 157 46 2407 77 3 3 chr9 19877309 19877620 -97985007 - AluY SINE Alu 0 311 1 459 287 9 0 chr9 19878881 19878989 -97983638 - MER81 DNA DNA -5 109 1 437 247 103 49 chr9 19879280 19879503 -97983124 + MLT1L LTR MaLR 368 602 -13 207 255 0 0 chr9 19879987 19880034 -97982593 + GA-rich Low_complexity Low_complexity 2 48 0 247 255 47 7 chr9 19881950 19882099 -97980528 + (TTAAA)n Simple_repeat Simple_repeat 2 156 0 24 32 0 0 chr9 19882099 19882130 -97980497 + AT_rich Low_complexity Low_complexity 1 31 0 398 115 0 0 chr9 19882310 19882362 -97980265 + AluJ/FRAM SINE Alu 231 282 -20 290 260 10 40 chr9 19883141 19883241 -97979386 - HsTC2 DNA Tc2 -1799 99 3 330 297 54 7 chr9 19883949 19884097 -97978530 - MER103 DNA DNA -10 156 2 194 244 44 0 chr9 19884232 19884277 -97978350 - L2 LINE L2 -556 2758 2712 286 309 0 0 chr9 19884330 19884398 -97978229 - L2 LINE L2 0 3313 3246 297 317 41 28 chr9 19884505 19884650 -97977977 - L2 LINE L2 -4 3268 3122 447 19 0 0 chr9 19884774 19884826 -97977801 + (TA)n Simple_repeat Simple_repeat 1 52 0 2158 106 0 35 chr9 19884835 19885147 -97977480 - AluSx SINE Alu -11 301 1 186 118 0 0 chr9 19885420 19885454 -97977173 + (CAA)n Simple_repeat Simple_repeat 3 36 0 233 29 0 0 chr9 19885655 19885690 -97976937 + L1PA3 LINE L1 6120 6154 -1 738 254 62 0 chr9 19885720 19885980 -97976647 - MER69 DNA AcHobo -236 2290 2015 * 2520 258 78 36 chr9 19885979 19886748 -97975879 - MER69 DNA AcHobo -425 801 1 236 378 115 35 chr9 19887647 19888288 -97974339 + L2 LINE L2 2353 3046 -226 590 264 104 26 chr9 19888375 19888568 -97974059 - MIR SINE MIR -8 254 47 2210 128 0 0 chr9 19888675 19888980 -97973647 - AluSx SINE Alu -7 305 1 264 344 49 33 chr9 19888980 19889102 -97973525 + L2 LINE L2 3142 3265 -7 21 36 0 0 chr9 19889114 19889142 -97973485 + AT_rich Low_complexity Low_complexity 1 28 0 1951 130 0 7 chr9 19891786 19892127 -97970500 - AluSx SINE Alu 0 339 1 438 233 98 78 chr9 19892277 19892470 -97970157 + MIR SINE MIR 24 220 -42 522 367 52 46 chr9 19892479 19892847 -97969780 - L2 LINE L2 0 3272 2903 497 335 174 19 chr9 19892851 19893338 -97969289 - L2 LINE L2 -1037 2277 1715 1876 138 0 7 chr9 19893683 19893959 -97968668 + AluSx SINE Alu 1 274 -38 441 333 9 0 chr9 19893998 19894112 -97968515 - L2 LINE L2 -22 3250 3136 203 245 42 189 chr9 19894512 19894598 -97968029 - MIR3 SINE MIR -6 202 144 2219 125 3 0 chr9 19894598 19894910 -97967717 + AluSq SINE Alu 1 313 0 203 245 42 189 chr9 19894910 19894966 -97967661 - MIR3 SINE MIR -64 144 81 220 197 15 15 chr9 19895209 19895275 -97967352 + (TA)n Simple_repeat Simple_repeat 2 67 0 272 178 27 14 chr9 19895306 19895379 -97967248 + (TA)n Simple_repeat Simple_repeat 1 74 0 343 295 36 18 chr9 19895479 19895645 -97966982 - L1M4 LINE L1 -2056 4090 3922 3885 93 17 25 chr9 19895693 19896281 -97966346 - L1PA11 LINE L1 0 6174 5592 1934 123 3 71 chr9 19896334 19896658 -97965969 - AluSc SINE Alu -7 302 1 386 0 41 0 chr9 19896659 19896708 -97965919 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 1823 150 11 17 chr9 19896708 19896995 -97965632 - AluJb SINE Alu -27 285 1 1195 232 50 138 chr9 19897101 19898396 -97964231 - L1MC5 LINE L1 -60 7901 6721 378 329 13 60 chr9 19898401 19898643 -97963984 - L1M4 LINE L1 -2391 3755 3528 2258 88 0 50 chr9 19898643 19898961 -97963666 - AluSq SINE Alu -11 302 1 378 329 13 60 chr9 19898961 19899016 -97963611 - L1M4 LINE L1 -2618 3528 3472 236 235 25 67 chr9 19899018 19899137 -97963490 - L1MEd LINE L1 -5988 131 18 5157 273 51 15 chr9 19899925 19901735 -97960892 + L1MD2 LINE L1 39 1914 -4482 8157 237 78 30 chr9 19901760 19904859 -97957768 + L1MD2 LINE L1 2009 5227 -988 1234 244 32 48 chr9 19904887 19905228 -97957399 + L1MD2 LINE L1 5656 5992 -436 2347 84 10 0 chr9 19905228 19905524 -97957103 - AluSg SINE Alu -11 299 1 1234 244 32 48 chr9 19905524 19905555 -97957072 + L1MD2 LINE L1 5992 6022 -406 387 77 0 0 chr9 19905631 19905683 -97956944 + MADE1 DNA Mariner 28 79 -1 196 333 0 0 chr9 19905762 19905816 -97956811 - L2 LINE L2 -687 2627 2574 390 324 27 0 chr9 19906322 19906470 -97956157 + MER117 DNA MER1_type 11 162 -35 245 313 24 12 chr9 19906860 19906943 -97955684 - MIR SINE MIR -108 154 71 191 36 36 0 chr9 19906944 19906972 -97955655 + (CTGGGG)n Simple_repeat Simple_repeat 1 29 0 316 281 105 9 chr9 19907181 19907295 -97955332 - MIR SINE MIR -127 135 11 247 278 0 42 chr9 19909304 19909376 -97953251 - L2 LINE L2 -4 3268 3200 340 376 23 8 chr9 19909886 19910019 -97952608 + L3b LINE CR1 1443 1577 -6 195 319 124 26 chr9 19910119 19910232 -97952395 - L2 LINE L2 -17 3255 3132 202 111 0 44 chr9 19910926 19910971 -97951656 + (TC)n Simple_repeat Simple_repeat 2 44 0 1558 175 10 32 chr9 19911365 19911674 -97950953 + AluJo SINE Alu 3 304 -8 217 276 143 38 chr9 19912515 19912620 -97950007 - MIR SINE MIR -131 131 16 1342 176 45 77 chr9 19914119 19914432 -97948195 + AluJo SINE Alu 10 312 0 210 273 0 0 chr9 19914905 19914960 -97947667 + (TA)n Simple_repeat Simple_repeat 2 56 0 2346 104 0 0 chr9 19915578 19915885 -97946742 - AluSx SINE Alu -5 307 1 301 317 195 0 chr9 19915905 19916028 -97946599 - MER5A DNA MER1_type 0 189 43 629 223 8 8 chr9 19917316 19917446 -97945181 - L3 LINE CR1 -2 1575 1446 854 312 108 64 chr9 19917491 19918256 -97944371 - L3 LINE CR1 -343 1234 436 212 309 44 0 chr9 19918314 19918382 -97944245 - L3 LINE CR1 -1071 506 436 245 257 18 106 chr9 19918464 19918577 -97944050 + MIR SINE MIR 105 207 -55 308 319 31 66 chr9 19920164 19920390 -97942237 - L2 LINE L2 -4 3309 3092 234 295 150 29 chr9 19920440 19920613 -97942014 + L2 LINE L2 2672 2865 -449 480 292 0 56 chr9 19920703 19920847 -97941780 + L2 LINE L2 3136 3271 -1 240 259 159 65 chr9 19921109 19921279 -97941348 - L2 LINE L2 -9 3304 3119 1458 132 24 29 chr9 19921457 19921771 -97940856 - THE1B LTR MaLR 0 355 1 324 336 139 19 chr9 19922126 19922558 -97940069 + L2 LINE L2 1557 2040 -1274 662 313 74 11 chr9 19922611 19922895 -97939732 - LTR16A LTR ERVL -18 432 131 224 329 13 0 chr9 19923994 19924070 -97938557 + GA-rich Low_complexity Low_complexity 5 81 0 186 167 0 0 chr9 19924787 19924823 -97937804 + T-rich Low_complexity Low_complexity 1 36 0 2175 96 7 0 chr9 19925168 19925459 -97937168 - AluSg SINE Alu -17 293 1 290 296 37 0 chr9 19925496 19925577 -97937050 + L2 LINE L2 3227 3310 -3 229 311 87 3 chr9 19925575 19925745 -97936882 - MIR SINE MIR -34 228 3 * 26 30 0 0 chr9 19926393 19926426 -97936201 + AT_rich Low_complexity Low_complexity 1 33 0 1542 161 82 37 chr9 19926762 19927117 -97935510 + L1MB7 LINE L1 5795 6165 -19 658 301 51 19 chr9 19930019 19930235 -97932392 - MIR SINE MIR -15 247 25 693 258 160 18 chr9 19930663 19930888 -97931739 - MIR SINE MIR -3 259 3 444 329 61 43 chr9 19931639 19931870 -97930757 - MIR SINE MIR 0 262 28 255 79 0 0 chr9 19933806 19933844 -97928783 + (TC)n Simple_repeat Simple_repeat 2 39 0 1655 223 134 72 chr9 19934251 19935416 -97927211 - Charlie2a DNA MER1_type -6 2856 1620 1907 237 27 10 chr9 19935418 19935991 -97926636 + L1ME1 LINE L1 5236 5816 -350 799 169 62 56 chr9 19936001 19936179 -97926448 + L1ME1 LINE L1 6003 6334 0 293 240 0 13 chr9 19936182 19936257 -97926370 - Charlie2a DNA MER1_type -1227 1635 1562 344 167 14 0 chr9 19936354 19936426 -97926201 + (TA)n Simple_repeat Simple_repeat 2 74 0 1477 243 94 31 chr9 19936488 19937060 -97925567 - Charlie2a DNA MER1_type -2167 615 8 1805 200 40 38 chr9 19937506 19937713 -97924914 - MSTD LTR MaLR 0 396 186 2239 85 3 10 chr9 19937713 19938006 -97924621 - AluSp SINE Alu -22 291 1 1805 200 40 38 chr9 19938006 19938193 -97924434 - MSTD LTR MaLR -210 186 1 4470 255 68 28 chr9 19938206 19939541 -97923086 - MSTD-int LTR MaLR -15 1720 332 966 200 14 9 chr9 19939541 19939756 -97922871 - HERVL-B3 LTR ERVL -5438 216 1 2844 168 30 51 chr9 19939756 19940322 -97922305 - MLT2B3 LTR ERVL 0 554 1 25 83 0 0 chr9 19940542 19940602 -97922025 + AT_rich Low_complexity Low_complexity 1 60 0 646 269 131 57 chr9 19941671 19942006 -97920621 - L3b LINE CR1 -121 1462 1103 418 295 109 36 chr9 19942512 19942814 -97919813 + L2 LINE L2 2970 3293 -20 1561 191 16 16 chr9 19943123 19943427 -97919200 - AluJo SINE Alu -8 304 1 240 122 0 0 chr9 19943606 19943647 -97918980 + L1ME3A LINE L1 6126 6166 -4 732 224 38 76 chr9 19943990 19944254 -97918373 + MER112 DNA MER1_type 6 259 -1 285 254 32 0 chr9 19944595 19944658 -97917969 - MIR3 SINE MIR -7 201 137 440 287 9 9 chr9 19945244 19945359 -97917268 - L2 LINE L2 -1 3312 3198 583 94 71 39 chr9 19947145 19947272 -97915355 - L1MA8 LINE L1 0 6291 6161 790 217 58 16 chr9 19947702 19947891 -97914736 + MER8 DNA MER2_type 43 239 0 690 265 8 0 chr9 19948117 19948249 -97914378 - L2 LINE L2 -6 3266 3134 25 31 0 0 chr9 19948267 19948299 -97914328 + AT_rich Low_complexity Low_complexity 1 32 0 2248 131 0 0 chr9 19948450 19948762 -97913865 + AluSx SINE Alu 1 312 0 2276 180 82 39 chr9 19949162 19949723 -97912904 - L1MB2 LINE L1 -2 6169 5585 322 253 51 13 chr9 19949740 19949819 -97912808 - L2 LINE L2 0 3313 3232 726 274 144 24 chr9 19951140 19951523 -97911104 - MLT1J LTR MaLR -82 429 1 2172 98 0 7 chr9 19951530 19951844 -97910783 - AluSx SINE Alu 0 312 1 25 23 0 23 chr9 19952287 19952302 -97910325 + AT_rich Low_complexity Low_complexity 1 15 -27 759 66 82 0 chr9 19952302 19952424 -97910203 + L1MA8 LINE L1 6150 6281 -10 25 23 0 23 chr9 19952424 19952451 -97910176 + AT_rich Low_complexity Low_complexity 15 42 0 278 412 72 7 chr9 19952843 19952996 -97909631 - L2 LINE L2 -8 3264 3102 406 290 21 34 chr9 19953386 19953650 -97908977 - L2 LINE L2 -217 3055 2771 280 184 0 0 chr9 19953922 19953971 -97908656 + L2 LINE L2 3216 3264 -8 206 30 91 0 chr9 19954102 19954135 -97908492 + T-rich Low_complexity Low_complexity 1 36 0 185 308 44 124 chr9 19954270 19954520 -97908107 - MIR SINE MIR -13 249 20 436 238 143 0 chr9 19955047 19955173 -97907454 + MIR SINE MIR 2 145 -117 288 265 41 0 chr9 19955173 19955271 -97907356 - LTR67 LTR ERVL 0 557 456 498 248 40 0 chr9 19955736 19955861 -97906766 + MIR SINE MIR 130 259 -3 291 284 0 11 chr9 19955979 19956074 -97906553 + MIR SINE MIR 123 216 -46 205 156 22 22 chr9 19957045 19957090 -97905537 + (TA)n Simple_repeat Simple_repeat 1 45 0 447 261 46 50 chr9 19957090 19957279 -97905348 + MIR SINE MIR 14 212 -50 186 43 0 0 chr9 19959860 19959883 -97902744 + (CCCA)n Simple_repeat Simple_repeat 1 23 0 288 53 0 0 chr9 19960148 19960186 -97902441 + (TG)n Simple_repeat Simple_repeat 2 39 0 23 33 0 0 chr9 19961314 19961344 -97901283 + AT_rich Low_complexity Low_complexity 1 30 0 22 70 0 0 chr9 19961822 19961865 -97900762 + AT_rich Low_complexity Low_complexity 1 43 0 183 293 216 9 chr9 19965454 19965570 -97897057 + L2 LINE L2 3133 3272 0 1145 252 35 65 chr9 19965965 19966397 -97896230 + MLT1J2 LTR MaLR 3 421 -29 1443 102 16 0 chr9 19967056 19967242 -97895385 + AluSq SINE Alu 1 189 -124 21 0 0 0 chr9 19967295 19967316 -97895311 + AT_rich Low_complexity Low_complexity 1 21 0 289 338 15 53 chr9 19968882 19969015 -97893612 + L2 LINE L2 3145 3272 0 21 0 0 0 chr9 19969047 19969068 -97893559 + AT_rich Low_complexity Low_complexity 1 21 0 2412 75 0 7 chr9 19969344 19969652 -97892975 + AluY SINE Alu 6 311 0 427 234 0 0 chr9 19969902 19969979 -97892648 - L2 LINE L2 -20 3252 3176 678 207 35 35 chr9 19970825 19970994 -97891633 - MIR SINE MIR -50 212 44 358 311 104 70 chr9 19971189 19971575 -97891052 - L2 LINE L2 -30 3242 2844 225 254 0 90 chr9 19971878 19971945 -97890682 + L2 LINE L2 3207 3267 -5 1917 150 0 7 chr9 19972221 19972507 -97890120 + AluJb SINE Alu 7 290 -22 191 287 223 0 chr9 19973367 19973461 -97889166 - MIR SINE MIR -29 233 119 399 240 64 35 chr9 19973673 19973844 -97888783 + MER104 DNA MER2_type 1 176 -4 286 299 221 7 chr9 19974132 19974286 -97888341 + MER5A DNA MER1_type 1 187 -2 646 276 154 14 chr9 19974290 19974511 -97888116 + MIR SINE MIR 11 262 0 464 229 57 63 chr9 19974784 19974959 -97887668 - MER5B DNA MER1_type -4 174 1 200 246 88 0 chr9 19975730 19975787 -97886840 + MIR SINE MIR 160 221 -41 218 292 15 0 chr9 19976120 19976185 -97886442 + G-rich Low_complexity Low_complexity 2 67 0 271 266 114 82 chr9 19978522 19978706 -97883921 - MIR3 SINE MIR -6 202 13 217 369 58 10 chr9 19978785 19978888 -97883739 - L2 LINE L2 -11 3302 3195 363 325 81 44 chr9 19979648 19979808 -97882819 - L2 LINE L2 -2 3270 3105 2064 108 38 0 chr9 19979870 19980157 -97882470 + AluSx SINE Alu 1 298 -14 190 354 24 0 chr9 19980412 19980494 -97882133 - L2 LINE L2 -465 2849 2766 186 342 51 55 chr9 19980664 19980939 -97881688 - L2 LINE L2 -560 2754 2481 212 321 36 48 chr9 19981847 19981931 -97880696 - L2 LINE L2 -81 3191 3109 23 0 0 0 chr9 19983333 19983356 -97879271 + AT_rich Low_complexity Low_complexity 1 23 0 373 303 96 77 chr9 19984044 19984132 -97878495 - MIR SINE MIR -31 231 146 1959 124 31 3 chr9 19984132 19984422 -97878205 - AluSq SINE Alu -15 298 1 373 303 96 77 chr9 19984422 19984541 -97878086 - MIR SINE MIR -116 146 20 359 310 62 7 chr9 19984558 19984703 -97877924 + MIR SINE MIR 96 248 -14 2103 126 23 0 chr9 19987022 19987324 -97875303 + AluJo SINE Alu 1 309 -3 32 26 0 0 chr9 19988699 19988738 -97873889 + AT_rich Low_complexity Low_complexity 1 39 0 1918 139 48 65 chr9 19988815 19989215 -97873412 - L1MB3 LINE L1 -9 6174 5781 180 0 0 0 chr9 19989215 19989235 -97873392 + (TA)n Simple_repeat Simple_repeat 1 20 0 1918 139 48 65 chr9 19989235 19989293 -97873334 - L1MB3 LINE L1 -402 5781 5724 594 265 19 57 chr9 19989294 19989505 -97873122 - MIR SINE MIR -54 208 6 240 111 0 0 chr9 19989764 19989800 -97872827 + (TG)n Simple_repeat Simple_repeat 1 36 0 444 299 35 28 chr9 19989809 19989953 -97872674 - MIR SINE MIR -103 159 15 248 351 45 0 chr9 19991667 19991778 -97870849 + L2 LINE L2 3193 3308 -5 305 71 0 0 chr9 19993298 19993340 -97869287 + MADE1 DNA Mariner 5 46 -34 2226 109 7 0 chr9 19993696 19993999 -97868628 + AluSq SINE Alu 1 305 -8 21 36 0 0 chr9 19994480 19994508 -97868119 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr9 19994554 19994576 -97868051 + AT_rich Low_complexity Low_complexity 1 22 0 2897 6 0 0 chr9 19994696 19995010 -97867617 + AluYb8 SINE Alu 1 314 -4 489 283 84 51 chr9 19995327 19995564 -97867063 - MLT1H LTR MaLR -195 354 110 25 75 0 0 chr9 19997197 19997250 -97865377 + AT_rich Low_complexity Low_complexity 1 53 0 294 163 0 0 chr9 19998301 19998350 -97864277 - L2 LINE L2 0 3313 3265 21 57 0 0 chr9 19998515 19998550 -97864077 + AT_rich Low_complexity Low_complexity 1 35 0 202 171 86 0 chr9 19998618 19998653 -97863974 + L2 LINE L2 3220 3257 -15 183 227 0 45 chr9 19998858 19998902 -97863725 - MIR3 SINE MIR -24 184 143 1496 188 15 6 chr9 19998934 19999258 -97863369 - L1MB1 LINE L1 0 6168 5842 4952 180 66 38 chr9 19999260 20000114 -97862513 - L1MB1 LINE L1 -964 5182 4280 2427 58 10 3 chr9 20000114 20000423 -97862204 - AluY SINE Alu 0 311 1 4952 180 66 38 chr9 20000423 20000849 -97861778 - L1MB1 LINE L1 -1866 4280 3867 735 258 0 28 chr9 20000853 20001035 -97861592 + MER5B DNA MER1_type 2 178 0 1826 168 0 0 chr9 20001123 20001420 -97861207 - AluSx SINE Alu -7 305 9 180 0 0 0 chr9 20001807 20001827 -97860800 + (AGTTG)n Simple_repeat Simple_repeat 2 21 0 189 107 0 0 chr9 20001881 20001909 -97860718 + (A)n Simple_repeat Simple_repeat 1 28 0 225 159 0 0 chr9 20002019 20002063 -97860564 + GA-rich Low_complexity Low_complexity 1 44 0 250 354 20 0 chr9 20002396 20002495 -97860132 + MIR SINE MIR 41 141 -121 253 229 0 0 chr9 20002503 20002551 -97860076 + L2 LINE L2 3262 3309 -4 3582 21 39 0 chr9 20003211 20003643 -97858984 - L1PA2 LINE L1 0 6155 5707 260 135 0 19 chr9 20003776 20003828 -97858799 + (TTCC)n Simple_repeat Simple_repeat 2 52 0 3197 148 13 2 chr9 20003947 20004487 -97858140 - L1PB4 LINE L1 -1 6155 5610 1643 118 4 0 chr9 20004491 20004720 -97857907 - AluSg/x SINE Alu -1 311 82 1133 117 6 0 chr9 20007073 20007252 -97855375 + L1MA2 LINE L1 6125 6304 0 40 49 0 0 chr9 20007274 20007335 -97855292 + AT_rich Low_complexity Low_complexity 1 61 0 27 29 0 0 chr9 20007535 20007569 -97855058 + AT_rich Low_complexity Low_complexity 1 34 0 1026 138 29 0 chr9 20007922 20008096 -97854531 + L1PA16 LINE L1 5979 6157 -9 20364 45 2 0 chr9 20008234 20012503 -97850124 - L1PA5 LINE L1 0 6154 1880 661 233 0 31 chr9 20012788 20012947 -97849680 + FRAM SINE Alu 20 173 -3 2128 114 0 0 chr9 20013690 20013971 -97848656 - AluSx SINE Alu -31 281 1 2957 97 52 52 chr9 20013981 20014498 -97848129 - L1PA11 LINE L1 -2 6172 5656 533 313 99 14 chr9 20015211 20015422 -97847205 + MIR SINE MIR 26 254 -8 182 88 0 29 chr9 20015696 20015730 -97846897 + (CTTTG)n Simple_repeat Simple_repeat 2 34 0 242 337 174 0 chr9 20015993 20016091 -97846536 - MIR SINE MIR -64 144 30 502 286 50 0 chr9 20016481 20016621 -97846006 - MIR SINE MIR -5 257 111 191 298 0 0 chr9 20017552 20017599 -97845028 + L2 LINE L2 3221 3267 -5 885 270 4 13 chr9 20017615 20017841 -97844786 + MIR SINE MIR 2 225 -37 1200 268 27 27 chr9 20018060 20018471 -97844156 + L1ME4a LINE L1 5494 5904 -217 342 261 72 29 chr9 20018495 20018633 -97843994 + L1ME4a LINE L1 5973 6116 -5 310 175 18 0 chr9 20019509 20019566 -97843061 - L2 LINE L2 0 3313 3256 642 175 0 0 chr9 20020122 20020236 -97842391 + FLAM_A SINE Alu 24 137 -5 242 273 18 0 chr9 20020380 20020435 -97842192 + L2 LINE L2 2928 2983 -330 5659 113 55 60 chr9 20020453 20021440 -97841187 - THE1C-int LTR MaLR -598 982 1 1934 167 27 19 chr9 20021440 20021812 -97840815 - THE1C LTR MaLR 0 375 1 658 288 169 47 chr9 20022941 20023386 -97839241 - L2 LINE L2 -11 3302 2804 1577 174 16 44 chr9 20023439 20023874 -97838753 + AluJo SINE Alu 1 426 0 340 301 101 27 chr9 20023876 20024095 -97838532 - L2 LINE L2 -559 2755 2521 437 283 9 0 chr9 20024224 20024330 -97838297 + MIR3 SINE MIR 95 201 -7 201 251 106 73 chr9 20025057 20025236 -97837391 - L2 LINE L2 -19 3294 3110 250 258 0 32 chr9 20025247 20025309 -97837318 + L2 LINE L2 3174 3233 -39 2074 209 114 10 chr9 20025337 20025829 -97836798 + MER119 DNA MER1_type 41 583 0 2209 111 3 0 chr9 20026693 20026990 -97835637 + AluSq SINE Alu 4 301 -12 265 334 59 8 chr9 20027072 20027192 -97835435 + MIR SINE MIR 4 141 -67 264 248 105 40 chr9 20027250 20027403 -97835224 + L1MC/D LINE L1 5726 5885 -302 197 365 29 0 chr9 20027704 20027808 -97834819 + MIR SINE MIR 124 230 -32 1996 168 34 11 chr9 20027838 20028219 -97834408 + MLT1B LTR MaLR 1 390 0 429 236 27 18 chr9 20029508 20029618 -97833009 + MIR SINE MIR 63 173 -89 345 320 64 32 chr9 20030618 20030774 -97831853 - MIR SINE MIR -32 230 70 582 182 10 0 chr9 20031784 20031883 -97830744 - FRAM SINE Alu -22 154 55 189 0 0 0 chr9 20033095 20033116 -97829511 + (A)n Simple_repeat Simple_repeat 1 21 0 3131 192 26 12 chr9 20033535 20034177 -97828450 - MER82 DNA MER2_type -1 652 2 257 263 73 56 chr9 20034295 20034527 -97828100 + L1MEd LINE L1 914 1149 -4970 385 323 64 38 chr9 20034536 20034929 -97827698 + HAL1 LINE L1 1301 1703 -804 216 97 0 0 chr9 20035005 20035036 -97827591 + (TATG)n Simple_repeat Simple_repeat 4 34 0 691 276 48 99 chr9 20035055 20035282 -97827345 + MLT1I LTR MaLR 28 228 -181 368 288 163 0 chr9 20035282 20035442 -97827185 + MER5A DNA MER1_type 4 189 0 691 276 48 99 chr9 20035442 20035609 -97827018 + MLT1I LTR MaLR 228 402 -7 1060 224 37 58 chr9 20035621 20035916 -97826711 + MLT1E2 LTR MaLR 1 289 -337 430 241 45 22 chr9 20036381 20036518 -97826109 - L1ME LINE L1 -577 5572 5436 * 449 298 152 3 chr9 20036516 20036805 -97825822 - L1ME LINE L1 -2325 3804 3473 21 0 0 0 chr9 20036810 20036831 -97825796 + AT_rich Low_complexity Low_complexity 1 21 0 804 228 141 0 chr9 20036840 20037046 -97825581 + MIR SINE MIR 2 236 -26 914 277 136 23 chr9 20037302 20038187 -97824440 - L1ME LINE L1 -2919 3210 2226 21 36 0 0 chr9 20038187 20038215 -97824412 + AT_rich Low_complexity Low_complexity 1 28 0 22 70 0 0 chr9 20038292 20038335 -97824292 + AT_rich Low_complexity Low_complexity 1 43 0 303 317 62 57 chr9 20038347 20038695 -97823932 - L1MEc LINE L1 -3987 2168 1832 393 329 37 51 chr9 20038785 20039001 -97823626 - L1MEc LINE L1 -4618 1692 1480 311 289 6 69 chr9 20039171 20039330 -97823297 - HAL1 LINE L1 -899 1608 1460 237 211 18 18 chr9 20039398 20039455 -97823172 - L1MEc LINE L1 -4877 1242 1186 462 318 52 47 chr9 20039477 20040012 -97822615 - L1MEc LINE L1 -5025 1094 557 1970 181 24 3 chr9 20040208 20040590 -97822037 - L1MC1 LINE L1 -11 6322 5933 300 309 85 58 chr9 20040605 20040981 -97821646 - L1MEc LINE L1 -5732 387 2 185 241 123 118 chr9 20041039 20041242 -97821385 - L2 LINE L2 -99 3173 2970 387 21 0 0 chr9 20041450 20041498 -97821129 + L1PA6 LINE L1 6102 6149 -5 30 27 0 0 chr9 20042299 20042336 -97820291 + AT_rich Low_complexity Low_complexity 1 37 0 31510 107 12 59 chr9 20043519 20049974 -97812653 - L1PA7 LINE L1 -15 6139 1 22 0 0 0 chr9 20051058 20051080 -97811547 + AT_rich Low_complexity Low_complexity 1 22 0 185 272 174 11 chr9 20051235 20051327 -97811300 + L2 LINE L2 3139 3245 -27 792 289 34 78 chr9 20051780 20052266 -97810361 - L2 LINE L2 -2 3270 2818 755 232 186 65 chr9 20052273 20052467 -97810160 - L2 LINE L2 -616 2698 2529 1089 177 0 16 chr9 20052467 20052659 -97809968 + MER5A DNA MER1_type 1 189 0 755 232 186 65 chr9 20052659 20052677 -97809950 - L2 LINE L2 -785 2529 2515 1937 140 31 3 chr9 20052677 20052969 -97809658 + AluSx SINE Alu 1 300 -12 755 232 186 65 chr9 20052969 20053125 -97809502 - L2 LINE L2 -799 2515 2284 612 160 0 50 chr9 20053125 20053244 -97809383 - MER44D DNA MER2_type 0 705 593 240 130 182 0 chr9 20053290 20053367 -97809260 - MER44D DNA MER2_type -104 601 511 884 154 6 39 chr9 20053478 20053634 -97808993 - MER44D DNA MER2_type -188 421 1 228 220 0 20 chr9 20053634 20053684 -97808943 - L2 LINE L2 -1029 2285 2237 611 139 35 134 chr9 20055572 20055744 -97806883 + BC200 scRNA scRNA 2 156 -44 413 278 30 0 chr9 20057150 20057283 -97805344 - MER110 LTR ERV1 -28 463 327 2144 119 0 7 chr9 20057482 20057784 -97804843 + AluSx SINE Alu 1 300 -12 276 53 0 0 chr9 20059791 20059829 -97802798 + (TG)n Simple_repeat Simple_repeat 2 39 0 340 364 14 14 chr9 20060922 20061062 -97801565 - MIR3 SINE MIR -65 143 4 244 277 64 21 chr9 20061754 20061848 -97800779 - MIR3 SINE MIR 0 208 111 312 237 0 13 chr9 20062074 20062150 -97800477 - MIR SINE MIR -109 153 79 347 280 11 21 chr9 20062217 20062310 -97800317 - MER5B DNA MER1_type -1 177 86 1925 153 0 0 chr9 20062414 20062708 -97799919 + AluSx SINE Alu 1 294 -18 296 256 58 81 chr9 20062715 20062887 -97799740 + MIR SINE MIR 49 216 -46 194 234 309 21 chr9 20063259 20063353 -97799274 - MIR3 SINE MIR -28 180 60 625 285 86 5 chr9 20063695 20063881 -97798746 + MIR SINE MIR 13 213 -49 3412 5 0 0 chr9 20063883 20064262 -97798365 - L1PA2 LINE L1 -445 5710 5332 3892 20 0 0 chr9 20064265 20064717 -97797910 + L1PA2 LINE L1 5702 6153 -2 21 0 0 0 chr9 20065103 20065124 -97797503 + AT_rich Low_complexity Low_complexity 1 21 0 277 313 60 12 chr9 20065753 20065836 -97796791 - L2 LINE L2 -47 3225 3139 1519 225 38 26 chr9 20066001 20066419 -97796208 - MLT1C LTR MaLR -44 423 1 4116 211 32 35 chr9 20066423 20067373 -97795254 - MLT1C-int LTR MaLR -4 1367 421 1962 159 32 51 chr9 20067377 20067561 -97795066 + THE1B LTR MaLR 1 177 -187 2114 106 0 3 chr9 20067561 20067907 -97794720 + AluY SINE Alu 1 345 0 1962 159 32 51 chr9 20067907 20068092 -97794535 + THE1B LTR MaLR 177 364 0 627 142 0 9 chr9 20068092 20068198 -97794429 + THE1B-int LTR MaLR 1 105 -1475 * 6591 110 8 4 chr9 20068169 20069107 -97793520 + THE1B-int LTR MaLR 640 1580 0 2259 136 28 17 chr9 20069107 20069467 -97793160 + THE1B LTR MaLR 1 364 0 666 229 0 0 chr9 20069474 20069614 -97793013 - MLT1C-int LTR MaLR -958 413 274 1040 209 30 0 chr9 20069615 20069816 -97792811 + MLT2B3 LTR ERVL 1 207 -347 646 191 17 0 chr9 20069817 20069932 -97792695 + MSTD LTR MaLR 241 357 -39 5127 169 5 18 chr9 20070035 20071134 -97791493 + L1P4 LINE L1 4360 5445 -716 * 5582 160 26 1 chr9 20071129 20072592 -97790035 - L1MA4 LINE L1 -59 6241 4745 345 100 0 0 chr9 20072595 20072645 -97789982 + (TA)n Simple_repeat Simple_repeat 2 51 0 1617 139 128 0 chr9 20072645 20072903 -97789724 - AluSx SINE Alu -11 291 1 2454 171 15 4 chr9 20072906 20073385 -97789242 - L1MA4 LINE L1 -1596 4550 4067 40204 41 1 1 chr9 20073486 20078402 -97784225 - L1P LINE L1 -1233 4913 1 356 270 18 9 chr9 20078469 20078580 -97784047 + L3b LINE CR1 1370 1481 -102 422 277 21 21 chr9 20078679 20078820 -97783807 + MIR SINE MIR 66 206 -56 352 290 0 61 chr9 20079007 20079138 -97783489 + 7SK RNA RNA 3 125 -68 31 26 0 0 chr9 20079747 20079785 -97782842 + AT_rich Low_complexity Low_complexity 1 38 0 1798 126 28 0 chr9 20079997 20080251 -97782376 + AluSq SINE Alu 51 311 -2 1920 169 50 0 chr9 20080309 20080652 -97781975 + MER47A DNA MER2_type 7 366 0 762 193 0 15 chr9 20081350 20081485 -97781142 + FLAM_C SINE Alu 1 133 0 2093 131 0 3 chr9 20081800 20082091 -97780536 + AluSx SINE Alu 1 290 -22 368 341 82 0 chr9 20082305 20082440 -97780187 - L2 LINE L2 0 3272 3127 194 109 43 0 chr9 20083477 20083523 -97779104 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 375 23 0 0 chr9 20083661 20083705 -97778922 + (A)n Simple_repeat Simple_repeat 1 44 0 2375 76 7 0 chr9 20084214 20084516 -97778111 + AluY SINE Alu 1 304 -7 2474 54 0 0 chr9 20085839 20086137 -97776490 - AluY SINE Alu -13 298 1 528 285 59 19 chr9 20086579 20086835 -97775792 - L1ME LINE L1 -297 5824 5559 2229 119 0 6 chr9 20087346 20087657 -97774970 + AluSx SINE Alu 1 309 -3 254 235 20 0 chr9 20087927 20087978 -97774649 + MIR3 SINE MIR 106 157 -51 22 80 0 0 chr9 20089993 20090043 -97772584 + AT_rich Low_complexity Low_complexity 1 50 0 211 220 0 20 chr9 20091884 20091934 -97770693 + GA-rich Low_complexity Low_complexity 3 51 0 188 425 0 0 chr9 20092614 20092687 -97769940 + MIR SINE MIR 76 148 -60 40 37 0 0 chr9 20092752 20092806 -97769821 + AT_rich Low_complexity Low_complexity 1 54 0 304 185 0 49 chr9 20093758 20093839 -97768788 - L1ME4a LINE L1 -75 6046 5970 1126 269 0 4 chr9 20095276 20095532 -97767095 + MIR SINE MIR 2 256 -6 396 304 65 18 chr9 20096415 20096583 -97766044 + MIR SINE MIR 53 228 -34 202 250 0 0 chr9 20096603 20096651 -97765976 - MIR SINE MIR -130 132 85 344 254 94 35 chr9 20096675 20096850 -97765777 - MIR SINE MIR -55 207 17 201 312 75 54 chr9 20097724 20097817 -97764810 - MIR3 SINE MIR -100 108 14 245 292 169 0 chr9 20098555 20098644 -97763983 - L2 LINE L2 -5 3267 3164 1786 166 14 56 chr9 20098687 20099043 -97763584 + MER2 DNA MER2_type 1 341 -3 2106 80 47 0 chr9 20099634 20099909 -97762718 + AluY SINE Alu 1 288 -23 289 279 121 6 chr9 20100240 20100405 -97762222 - L1ME4a LINE L1 -3 6118 5935 428 258 47 38 chr9 20100447 20100660 -97761967 - L1ME4a LINE L1 -161 5960 5746 351 44 0 0 chr9 20102053 20102098 -97760529 + (CA)n Simple_repeat Simple_repeat 2 46 0 30 83 0 0 chr9 20102497 20102569 -97760058 + AT_rich Low_complexity Low_complexity 1 72 0 279 283 28 0 chr9 20104837 20104943 -97757684 + (TA)n Simple_repeat Simple_repeat 2 110 0 279 164 0 73 chr9 20104948 20105003 -97757624 - L3 LINE CR1 -97 1480 1430 22 0 0 0 chr9 20110550 20110572 -97752055 + AT_rich Low_complexity Low_complexity 1 22 0 425 234 11 26 chr9 20110748 20110881 -97751746 + MIR SINE MIR 107 236 -26 2080 98 16 26 chr9 20111088 20111394 -97751233 - AluSx SINE Alu -9 303 1 1733 169 3 10 chr9 20113779 20114087 -97748540 - AluJb SINE Alu -6 306 1 6532 199 47 14 chr9 20114198 20115871 -97746756 - L1 LINE L1 -2390 5175 3441 6678 123 7 3 chr9 20115875 20116832 -97745795 - HSMAR1 DNA Mariner 0 1287 327 4178 149 12 0 chr9 20116832 20117563 -97745064 - L1 LINE L1 -1368 4960 4221 2750 197 16 16 chr9 20117562 20118208 -97744419 - L1 LINE L1 -2916 3412 2767 * 2920 260 75 12 chr9 20118307 20119414 -97743213 - L1 LINE L1 -4097 1231 539 1088 306 14 43 chr9 20119871 20120290 -97742337 - L1 LINE L1 -5538 711 305 346 252 19 29 chr9 20120579 20120682 -97741945 + MIR SINE MIR 53 154 -108 391 98 0 0 chr9 20120740 20120791 -97741836 - AluSg/x SINE Alu -113 189 139 392 242 48 32 chr9 20120813 20120937 -97741690 - MIR SINE MIR -31 231 106 325 291 13 13 chr9 20120948 20121027 -97741600 - L2 LINE L2 0 3313 3235 354 254 23 48 chr9 20122423 20122460 -97740167 - MIR SINE MIR -28 180 144 195 42 0 0 chr9 20122460 20122484 -97740143 + (TTTTA)n Simple_repeat Simple_repeat 5 28 0 354 254 23 48 chr9 20122484 20122608 -97740019 - MIR SINE MIR -64 144 20 277 327 18 36 chr9 20123897 20124007 -97738620 + Charlie8 DNA MER1_type 1 108 -2309 35 0 0 0 chr9 20124007 20124042 -97738585 + AT_rich Low_complexity Low_complexity 1 35 0 1126 61 0 0 chr9 20124106 20124238 -97738389 + AluY SINE Alu 1 132 -179 21 0 0 0 chr9 20124238 20124259 -97738368 + AT_rich Low_complexity Low_complexity 1 21 0 388 264 295 5 chr9 20124502 20124695 -97737932 - MIR SINE MIR -12 250 2 340 166 55 43 chr9 20125921 20126084 -97736543 + (TA)n Simple_repeat Simple_repeat 1 165 0 569 286 62 22 chr9 20127396 20127574 -97735053 - MIR SINE MIR -47 215 31 684 67 0 0 chr9 20127577 20127667 -97734960 + (CTATG)n Simple_repeat Simple_repeat 5 94 0 795 140 134 0 chr9 20127919 20128076 -97734551 - L1MB3 LINE L1 -1 6182 6005 2370 100 42 17 chr9 20128076 20128635 -97733992 - LTR10E LTR ERV1 0 633 3 2323 175 28 13 chr9 20128637 20129101 -97733526 - L1MB3 LINE L1 -172 6008 5538 198 0 0 0 chr9 20131798 20131820 -97730807 + (TTA)n Simple_repeat Simple_repeat 3 24 0 3127 56 0 0 chr9 20131821 20132213 -97730414 - L1PA4 LINE L1 -19 6136 5745 196 268 106 65 chr9 20134045 20134168 -97728459 - MIR SINE MIR -26 236 109 325 229 121 0 chr9 20136655 20136738 -97725889 - L2 LINE L2 0 3313 3221 5724 107 13 27 chr9 20136763 20138127 -97724500 + L1PA12 LINE L1 4799 6164 -4 422 291 167 24 chr9 20138131 20138406 -97724221 - L2 LINE L2 -221 3092 2783 230 397 50 7 chr9 20138594 20138735 -97723892 + MIR SINE MIR 46 192 -70 305 293 50 2 chr9 20139790 20139886 -97722741 + MIR SINE MIR 38 136 -72 402 318 31 31 chr9 20139972 20140167 -97722460 + MER117 DNA MER1_type 3 197 0 1646 167 8 0 chr9 20140361 20140619 -97722008 - AluSq SINE Alu -52 261 2 213 238 0 0 chr9 20142522 20142564 -97720063 + (CATA)n Simple_repeat Simple_repeat 2 43 0 653 239 190 81 chr9 20142811 20143254 -97719373 - MLT1J LTR MaLR -20 491 1 468 272 73 7 chr9 20143293 20143429 -97719198 - L2 LINE L2 -194 3078 2934 207 0 0 0 chr9 20144311 20144334 -97718293 + (T)n Simple_repeat Simple_repeat 1 23 0 456 290 74 68 chr9 20144423 20144733 -97717894 + L2 LINE L2 2986 3297 -16 255 228 268 8 chr9 20145658 20145781 -97716846 + MIR SINE MIR 65 219 -43 396 0 0 0 chr9 20145852 20145896 -97716731 + (CA)n Simple_repeat Simple_repeat 1 44 0 426 297 0 16 chr9 20145967 20146095 -97716532 - L2 LINE L2 -1 3312 3187 2086 129 10 6 chr9 20147179 20147490 -97715137 - AluSx SINE Alu 0 312 1 696 279 67 0 chr9 20147555 20147763 -97714864 - MIR SINE MIR -22 240 19 24 0 0 0 chr9 20148475 20148499 -97714128 + AT_rich Low_complexity Low_complexity 1 24 0 832 311 157 25 chr9 20150428 20151085 -97711542 - L2 LINE L2 -4 3309 2532 1033 82 5 33 chr9 20151099 20151283 -97711344 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1792 162 0 21 chr9 20151285 20151575 -97711052 - AluJb SINE Alu -28 284 1 5509 243 39 17 chr9 20151575 20151678 -97710949 - L1MC/D LINE L1 -743 5472 5373 1274 211 106 81 chr9 20151678 20152171 -97710456 - MLT1D LTR MaLR 0 505 1 5509 243 39 17 chr9 20152171 20153147 -97709480 - L1MC/D LINE L1 -842 5373 4414 916 193 23 29 chr9 20153147 20153318 -97709309 - FAM SINE Alu -5 170 1 5509 243 39 17 chr9 20153318 20154173 -97708454 - L1MC/D LINE L1 -1801 4414 3579 3032 261 31 15 chr9 20154232 20155075 -97707552 - L1MC/D LINE L1 -5505 891 36 911 208 39 26 chr9 20155075 20155306 -97707321 - HsTC2 DNA Tc2 -404 1494 1261 640 264 0 0 chr9 20155299 20155447 -97707180 - HsTC2 DNA Tc2 -1750 148 1 * 315 270 135 9 chr9 20155455 20155566 -97707061 - L2 LINE L2 -796 2518 2394 25 0 0 0 chr9 20155783 20155808 -97706819 + AT_rich Low_complexity Low_complexity 1 25 0 233 250 76 54 chr9 20156352 20156444 -97706183 - 7SK RNA RNA -99 94 1 229 281 74 22 chr9 20156718 20156853 -97705774 + MER103 DNA DNA 3 144 -22 404 297 20 0 chr9 20156890 20156991 -97705636 + L2 LINE L2 3165 3267 -5 2031 114 7 24 chr9 20157605 20157903 -97704724 + AluSg SINE Alu 2 294 -16 428 256 44 44 chr9 20158257 20158417 -97704210 - MIR SINE MIR -6 256 97 1484 165 75 0 chr9 20158574 20158840 -97703787 + AluJb SINE Alu 1 286 -26 2218 105 10 3 chr9 20158850 20159144 -97703483 + AluSg SINE Alu 1 296 -14 344 118 15 0 chr9 20159144 20159212 -97703415 + (TA)n Simple_repeat Simple_repeat 2 70 0 259 333 9 9 chr9 20160589 20160700 -97701927 + CT-rich Low_complexity Low_complexity 5 115 0 26 64 0 0 chr9 20163905 20163952 -97698675 + AT_rich Low_complexity Low_complexity 1 47 0 363 343 146 27 chr9 20164838 20165530 -97697097 + L2 LINE L2 2280 3055 -217 322 338 62 31 chr9 20165665 20165825 -97696802 - MIR SINE MIR -55 153 18 5411 146 43 8 chr9 20166592 20168563 -97694064 - L1MA8 LINE L1 -5 6286 4249 23 0 0 0 chr9 20168650 20168673 -97693954 + AT_rich Low_complexity Low_complexity 1 23 0 40886 35 21 1 chr9 20168673 20174704 -97687923 - L1PA3 LINE L1 0 6155 2 195 69 0 0 chr9 20175247 20175276 -97687351 + (A)n Simple_repeat Simple_repeat 1 29 0 285 98 0 0 chr9 20177341 20177382 -97685245 + (TA)n Simple_repeat Simple_repeat 2 42 0 2115 104 3 17 chr9 20177382 20177669 -97684958 - AluSq SINE Alu -30 283 1 1342 172 34 4 chr9 20177698 20177931 -97684696 + AluSg/x SINE Alu 73 312 0 180 0 0 0 chr9 20177931 20177951 -97684676 + (TA)n Simple_repeat Simple_repeat 2 21 0 683 102 19 0 chr9 20177953 20178061 -97684566 - MER41B LTR ERV1 -524 111 2 186 133 0 0 chr9 20178762 20178792 -97683835 + (A)n Simple_repeat Simple_repeat 1 30 0 508 249 234 19 chr9 20180925 20181134 -97681493 + MIR SINE MIR 9 262 0 498 324 85 47 chr9 20183092 20183119 -97679508 - L2 LINE L2 -194 3078 3054 1940 161 135 5 chr9 20183119 20183498 -97679129 - MSTA LTR MaLR 0 428 1 7694 157 93 37 chr9 20183500 20185062 -97677565 - MSTA-int LTR MaLR -2 1649 1 1999 135 143 8 chr9 20185062 20185439 -97677188 - MSTA LTR MaLR 0 428 1 498 324 85 47 chr9 20185439 20185883 -97676744 - L2 LINE L2 -217 3055 2569 445 297 90 7 chr9 20185890 20186035 -97676592 + MIR SINE MIR 2 158 -104 515 181 7 49 chr9 20186035 20186107 -97676520 - LTR37A LTR ERV1 0 426 360 2144 102 0 14 chr9 20186107 20186423 -97676204 - AluSc SINE Alu 0 312 1 515 181 7 49 chr9 20186423 20186493 -97676134 - LTR37A LTR ERV1 -66 360 289 764 275 37 60 chr9 20186862 20187160 -97675467 - L2 LINE L2 -730 2584 2294 528 242 50 25 chr9 20187195 20187356 -97675271 + MIR SINE MIR 88 252 -10 552 263 66 89 chr9 20187391 20187529 -97675098 - L2 LINE L2 -1044 2270 2130 2113 122 0 17 chr9 20187529 20187824 -97674803 - AluSx SINE Alu -20 292 3 552 263 66 89 chr9 20187824 20188035 -97674592 - L2 LINE L2 -1184 2130 1929 1785 180 0 22 chr9 20188553 20188870 -97673757 - AluJo SINE Alu -2 310 1 1055 204 68 30 chr9 20190048 20190415 -97672212 - LTR37A LTR ERV1 0 426 46 2323 111 0 10 chr9 20190450 20190757 -97671870 - AluSx SINE Alu -5 307 4 2298 106 25 33 chr9 20191137 20191504 -97671123 - THE1B LTR MaLR 0 364 1 2118 97 24 0 chr9 20192007 20192296 -97670331 - AluSx SINE Alu -16 296 1 321 26 0 0 chr9 20192938 20192976 -97669651 + (TA)n Simple_repeat Simple_repeat 2 39 0 891 203 62 75 chr9 20193338 20193565 -97669062 + MER58A DNA MER1_type 1 224 0 24 0 0 0 chr9 20194545 20194569 -97668058 + AT_rich Low_complexity Low_complexity 1 24 0 2565 154 26 11 chr9 20195150 20195636 -97666991 - MER41B LTR ERV1 -12 597 100 689 270 28 22 chr9 20196773 20196951 -97665676 - MIR3 SINE MIR -24 184 6 22 0 0 0 chr9 20198582 20198604 -97664023 + AT_rich Low_complexity Low_complexity 1 22 0 234 0 0 0 chr9 20199851 20199877 -97662750 + (T)n Simple_repeat Simple_repeat 1 26 0 40734 34 24 1 chr9 20200420 20206476 -97656151 + L1PA3 LINE L1 2 6155 0 1885 148 3 57 chr9 20208513 20208844 -97653783 - AluSq SINE Alu 0 313 1 200 303 76 0 chr9 20209301 20209367 -97653260 - L3b LINE CR1 -88 1495 1425 643 301 40 10 chr9 20209416 20209615 -97653012 + MIR SINE MIR 58 262 0 2147 106 30 13 chr9 20209682 20209983 -97652644 + AluSx SINE Alu 1 306 -6 404 276 90 19 chr9 20212243 20212399 -97650228 + MIR3 SINE MIR 35 201 -7 292 359 11 0 chr9 20213801 20213893 -97648734 + L2 LINE L2 3180 3272 0 2454 74 0 0 chr9 20214090 20214386 -97648241 - AluY SINE Alu -15 296 1 310 223 0 64 chr9 20214932 20215026 -97647601 - HAL1b LINE L1 -91 1257 1170 251 283 43 11 chr9 20215162 20215254 -97647373 + MIR SINE MIR 61 155 -107 1766 162 3 30 chr9 20215403 20215705 -97646922 + AluJb SINE Alu 3 296 -16 2072 130 0 0 chr9 20216978 20217312 -97645315 + AluSx SINE Alu 1 334 0 293 335 112 23 chr9 20217709 20218120 -97644507 - L2 LINE L2 -78 3194 2681 232 242 0 16 chr9 20218381 20218443 -97644184 + MIR3 SINE MIR 145 205 -3 350 222 89 22 chr9 20218809 20218899 -97643728 - L2 LINE L2 -5 3267 3172 380 258 79 53 chr9 20220421 20220461 -97642166 + MIR SINE MIR 55 92 -170 2143 131 52 120 chr9 20220461 20220531 -97642096 - MSTA LTR MaLR 0 428 355 1713 149 4 0 chr9 20220531 20220779 -97641848 + AluJb SINE Alu 3 251 -61 2143 131 52 120 chr9 20220779 20221167 -97641460 - MSTA LTR MaLR -73 355 1 380 258 79 53 chr9 20221167 20221316 -97641311 + MIR SINE MIR 92 249 -13 195 184 0 53 chr9 20221855 20221931 -97640696 + GA-rich Low_complexity Low_complexity 1 72 0 454 325 94 9 chr9 20222025 20222237 -97640390 - MIR SINE MIR -2 260 31 196 256 81 47 chr9 20222318 20222404 -97640223 - L2 LINE L2 -38 3275 3187 464 281 176 10 chr9 20223194 20223393 -97639234 + MIR SINE MIR 19 250 -12 211 265 143 118 chr9 20223660 20223905 -97638722 - L2 LINE L2 -10 3262 3012 817 125 0 0 chr9 20224919 20225031 -97637596 - AluJb SINE Alu 0 312 201 21 0 0 0 chr9 20225073 20225094 -97637533 + AT_rich Low_complexity Low_complexity 1 21 0 2438 98 0 0 chr9 20226217 20226524 -97636103 + AluSp SINE Alu 1 307 -6 196 332 33 10 chr9 20226883 20226983 -97635644 - MIR SINE MIR -48 160 59 897 225 38 10 chr9 20227046 20227255 -97635372 + MIR SINE MIR 12 226 -36 946 226 77 14 chr9 20228157 20228378 -97634249 + MIR SINE MIR 28 262 0 357 259 48 88 chr9 20228378 20228525 -97634102 - MIR SINE MIR -100 162 22 314 141 0 16 chr9 20229049 20229113 -97633514 + (TG)n Simple_repeat Simple_repeat 2 64 0 2165 121 3 10 chr9 20229643 20229957 -97632670 - AluSx SINE Alu 0 312 1 500 374 116 14 chr9 20230036 20230330 -97632297 + L2 LINE L2 2949 3272 0 686 285 115 12 chr9 20230744 20230997 -97631630 - MLT1B LTR MaLR 0 467 189 1072 161 24 29 chr9 20231225 20231430 -97631197 - MLT1B LTR MaLR -186 204 1 301 269 77 39 chr9 20233188 20233318 -97629309 + MIR SINE MIR 88 222 -40 188 0 0 0 chr9 20233692 20233715 -97628912 - L2 LINE L2 -7 3265 3243 619 304 84 17 chr9 20233733 20233970 -97628657 - MIR SINE MIR -1 261 9 4561 216 83 9 chr9 20233976 20235051 -97627576 - L1MC4 LINE L1 -431 7611 6458 191 333 10 42 chr9 20235298 20235394 -97627233 - L2 LINE L2 -560 2754 2662 21 0 0 0 chr9 20235955 20235976 -97626651 + AT_rich Low_complexity Low_complexity 1 21 0 576 245 97 7 chr9 20236346 20236501 -97626126 + MIR SINE MIR 35 203 -59 404 286 75 12 chr9 20236710 20236871 -97625756 + MIR SINE MIR 92 262 0 931 290 38 9 chr9 20237483 20237800 -97624827 - MER46C DNA MER2_type -6 332 7 431 337 98 62 chr9 20237895 20237949 -97624678 - L2 LINE L2 -22 3250 3199 2202 190 53 22 chr9 20237949 20238402 -97624225 - MLT1C LTR MaLR 0 467 1 431 337 98 62 chr9 20238402 20238623 -97624004 - L2 LINE L2 -73 3199 2965 1790 203 90 15 chr9 20239322 20239789 -97622838 - L1ME3A LINE L1 -5 6165 5664 2065 215 108 21 chr9 20239810 20240327 -97622300 - MLT1F1 LTR MaLR 0 567 6 588 266 53 39 chr9 20240503 20240710 -97621917 + MIR SINE MIR 1 210 -52 1103 192 56 23 chr9 20242920 20243134 -97619493 + MER58A DNA MER1_type 1 221 -3 316 167 0 0 chr9 20243390 20243438 -97619189 - MER94 DNA DNA -83 51 4 238 261 29 14 chr9 20243823 20243892 -97618735 - MIR SINE MIR -77 185 116 300 305 183 0 chr9 20243972 20244103 -97618524 - MIR3 SINE MIR -26 182 28 257 230 10 50 chr9 20244910 20245010 -97617617 - L1ME4a LINE L1 -42 6079 5984 1482 129 9 0 chr9 20245020 20245054 -97617573 + AluSg/x SINE Alu 89 121 -189 423 0 0 0 chr9 20245054 20245101 -97617526 + (TA)n Simple_repeat Simple_repeat 1 47 0 1482 129 9 0 chr9 20245101 20245283 -97617344 + AluSg/x SINE Alu 121 307 -3 234 0 0 0 chr9 20246277 20246303 -97616324 + (TCC)n Simple_repeat Simple_repeat 2 27 0 565 232 28 14 chr9 20246911 20247053 -97615574 - MIR SINE MIR -23 239 96 2291 192 72 11 chr9 20247325 20247800 -97614827 - MLT1D LTR MaLR 0 505 2 234 249 28 77 chr9 20249197 20249378 -97613249 + (CAAA)n Simple_repeat Simple_repeat 1 172 0 240 200 33 125 chr9 20249515 20249635 -97612992 + MER103 DNA DNA 56 164 -2 509 314 124 23 chr9 20249950 20250208 -97612419 + L2 LINE L2 2989 3272 0 418 278 78 9 chr9 20251202 20251317 -97611310 - L2 LINE L2 -2 3270 3148 7253 126 34 10 chr9 20251492 20253054 -97609573 - L1MA1 LINE L1 -2 6300 4674 231 36 0 0 chr9 20253054 20253082 -97609545 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 7253 126 34 10 chr9 20253082 20253642 -97608985 - L1MA1 LINE L1 -1628 4674 4129 240 388 41 6 chr9 20253642 20253812 -97608815 - L2 LINE L2 -237 3035 2860 816 290 128 32 chr9 20254870 20255246 -97607381 - L2 LINE L2 -76 3237 2826 243 234 39 52 chr9 20255265 20255342 -97607285 + L2 LINE L2 3238 3313 0 858 245 95 126 chr9 20255390 20255647 -97606980 - L2 LINE L2 -493 2821 2558 2247 155 5 37 chr9 20255647 20256022 -97606605 - MLT1A1 LTR MaLR -2 363 1 858 245 95 126 chr9 20256022 20256385 -97606242 - L2 LINE L2 -756 2558 2220 187 337 43 11 chr9 20256770 20256862 -97605765 - L2 LINE L2 -4 3309 3215 231 230 70 110 chr9 20257537 20257637 -97604990 + MIR SINE MIR 81 176 -86 21 57 0 0 chr9 20257724 20257759 -97604868 + AT_rich Low_complexity Low_complexity 1 35 0 216 214 0 0 chr9 20258142 20258184 -97604443 + MER5B DNA MER1_type 2 43 -135 611 199 8 15 chr9 20258230 20258361 -97604266 - MER5B DNA MER1_type -48 130 1 1382 248 117 30 chr9 20258695 20259158 -97603469 - MLT1J LTR MaLR -4 507 5 252 0 0 0 chr9 20260962 20260990 -97601637 + (T)n Simple_repeat Simple_repeat 1 28 0 376 289 163 0 chr9 20262764 20262930 -97599697 - MIR SINE MIR -12 250 58 245 280 140 47 chr9 20263134 20263327 -97599300 - MIR SINE MIR -21 241 31 451 272 118 35 chr9 20263471 20263699 -97598928 - MIR SINE MIR 0 262 16 276 320 10 0 chr9 20264318 20264415 -97598212 + MIR3 SINE MIR 87 184 -24 249 253 11 35 chr9 20265011 20265098 -97597529 + MER103 DNA DNA 81 165 -1 357 290 89 0 chr9 20266189 20266313 -97596314 - L2 LINE L2 -1 3271 3137 183 324 120 37 chr9 20266356 20266464 -97596163 - L2 LINE L2 0 3272 3156 291 309 280 16 chr9 20266466 20266709 -97595918 + L2 LINE L2 3006 3312 -1 * 732 314 104 21 chr9 20266703 20267233 -97595394 - L2 LINE L2 -121 3192 2609 284 295 102 42 chr9 20267430 20267596 -97595031 - MER5A DNA MER1_type -11 178 3 446 169 12 12 chr9 20267749 20267832 -97594795 - MIR SINE MIR -135 127 45 689 169 66 0 chr9 20267848 20267984 -97594643 + MER58C DNA MER1_type 71 215 0 259 268 114 82 chr9 20267984 20268290 -97594337 + L2 LINE L2 2661 2976 -338 205 200 0 0 chr9 20268475 20268515 -97594112 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 512 172 172 108 chr9 20268831 20268994 -97593633 - MIR SINE MIR -10 252 72 2220 98 0 3 chr9 20268994 20269281 -97593346 + AluSc SINE Alu 6 291 -18 512 172 172 108 chr9 20269281 20269320 -97593307 - MIR SINE MIR -190 72 37 336 266 108 36 chr9 20270463 20270602 -97592025 + MIR SINE MIR 10 158 -104 763 181 84 101 chr9 20271699 20271926 -97590701 - MER58A DNA MER1_type 0 224 2 218 315 198 0 chr9 20272599 20272710 -97589917 + MIR SINE MIR 59 191 -71 1117 180 34 56 chr9 20273322 20273589 -97589038 - MIR SINE MIR -1 261 1 281 232 110 50 chr9 20274294 20274425 -97588202 - MIR SINE MIR -62 146 36 218 392 10 10 chr9 20275623 20275720 -97586907 + MIR3 SINE MIR 11 107 -101 1457 178 16 0 chr9 20278287 20278540 -97584087 + AluJo SINE Alu 56 312 0 1862 168 0 25 chr9 20278732 20279047 -97583580 - AluSx SINE Alu -5 307 1 235 315 120 37 chr9 20279653 20279761 -97582866 - L2 LINE L2 -5 3308 3192 303 286 175 32 chr9 20280307 20280461 -97582166 - MIR3 SINE MIR -25 183 8 650 266 48 19 chr9 20281724 20281941 -97580686 + MIR SINE MIR 31 251 -11 963 282 16 0 chr9 20282339 20282594 -97580033 + MIR SINE MIR 4 262 0 2372 111 0 0 chr9 20284206 20284513 -97578114 + AluSq SINE Alu 3 309 -4 399 210 40 20 chr9 20285374 20285474 -97577153 - L1MB7 LINE L1 -12 6172 6071 3519 117 35 8 chr9 20285488 20286003 -97576624 - L1PA14 LINE L1 -2 6159 5631 820 194 5 57 chr9 20286011 20286104 -97576523 - L1MB8 LINE L1 -2 6176 6080 1736 155 28 7 chr9 20286104 20286395 -97576232 + AluJo SINE Alu 1 297 -15 820 194 5 57 chr9 20286395 20286512 -97576115 - L1MB8 LINE L1 -98 6080 5977 791 239 45 45 chr9 20286725 20286968 -97575659 + MIR SINE MIR 1 243 -19 186 324 127 14 chr9 20287679 20287750 -97574877 - MIR3 SINE MIR -17 191 113 256 297 27 14 chr9 20287932 20288006 -97574621 - MIR3 SINE MIR -49 159 85 230 83 0 0 chr9 20288876 20288912 -97573715 - L1MA10 LINE L1 -1 6333 6298 * 235 128 0 0 chr9 20288883 20288922 -97573705 - L1MB7 LINE L1 -10 6174 6136 * 2422 191 19 13 chr9 20288920 20289391 -97573236 - L1MB8 LINE L1 -303 5881 5408 191 374 66 0 chr9 20289425 20289516 -97573111 + L2 LINE L2 3144 3240 -32 216 281 146 42 chr9 20289665 20289761 -97572866 - MIR SINE MIR -134 128 23 203 313 16 31 chr9 20290889 20291017 -97571610 + CT-rich Low_complexity Low_complexity 2 127 0 324 154 195 0 chr9 20291848 20291971 -97570656 + FRAM SINE Alu 11 157 -9 2741 192 86 4 chr9 20291971 20292654 -97569973 - L1MB8 LINE L1 -88 6090 5352 1017 186 144 168 chr9 20292701 20293207 -97569420 - MLT1E3 LTR MaLR -8 616 4 242 302 111 84 chr9 20293207 20293430 -97569197 - Charlie8 DNA MER1_type -2176 241 13 210 279 58 12 chr9 20293687 20293773 -97568854 + MIR3 SINE MIR 112 201 -7 364 257 164 14 chr9 20295121 20295288 -97567339 - MIR SINE MIR -2 260 61 245 317 24 30 chr9 20295319 20295486 -97567141 - MER117 DNA MER1_type -31 166 1 775 240 18 0 chr9 20295920 20296091 -97566536 - MLT1J1 LTR MaLR -270 176 3 2490 48 0 6 chr9 20297010 20297321 -97565306 + AluY SINE Alu 1 309 -2 384 210 22 101 chr9 20297817 20297955 -97564672 - MER5A DNA MER1_type -9 180 54 183 339 0 0 chr9 20298367 20298429 -97564198 - MER5A DNA MER1_type -120 69 8 340 327 46 26 chr9 20298441 20298594 -97564033 + MIR SINE MIR 23 178 -84 680 273 110 54 chr9 20298641 20299155 -97563472 - L2 LINE L2 -5 3308 2756 2331 111 3 0 chr9 20299155 20299462 -97563165 + AluSq SINE Alu 1 308 -5 680 273 110 54 chr9 20299462 20299694 -97562933 - L2 LINE L2 -557 2756 2538 2508 220 95 54 chr9 20300417 20301337 -97561290 + L1MDa LINE L1 18 1068 -5472 2104 230 49 30 chr9 20301331 20302207 -97560420 + L1M4 LINE L1 4066 5115 -1031 * 6775 169 38 23 chr9 20302209 20302615 -97560012 - L1 LINE L1 -1012 5134 4736 2271 101 7 0 chr9 20302615 20302911 -97559716 - AluSc SINE Alu -11 298 1 6775 169 38 23 chr9 20302911 20304019 -97558608 - L1 LINE L1 -1410 4736 3665 996 172 27 0 chr9 20304015 20304201 -97558426 + L1MA6 LINE L1 5143 5333 -813 * 2307 93 31 0 chr9 20304200 20304521 -97558106 + L1PA13 LINE L1 5812 6142 -21 3887 109 5 38 chr9 20304527 20305050 -97557577 + L1MA6 LINE L1 5313 5815 -485 1684 159 0 80 chr9 20305050 20305389 -97557238 + AluJb SINE Alu 1 312 0 3887 109 5 38 chr9 20305389 20305477 -97557150 + L1MA6 LINE L1 5815 5904 -396 2516 127 41 8 chr9 20305509 20305903 -97556724 - L1MA6 LINE L1 -5 6295 5889 1982 129 43 0 chr9 20305904 20306183 -97556444 - AluSx SINE Alu -20 292 2 396 125 0 14 chr9 20306184 20306256 -97556371 + L1MD2 LINE L1 6289 6359 0 252 0 0 0 chr9 20306368 20306396 -97556231 + (T)n Simple_repeat Simple_repeat 1 28 0 28 0 0 0 chr9 20306409 20306437 -97556190 + AT_rich Low_complexity Low_complexity 1 28 0 818 149 8 0 chr9 20306437 20306571 -97556056 - L1MA5A LINE L1 -10 6287 6153 258 281 110 12 chr9 20306923 20307005 -97555622 - L2 LINE L2 -46 3226 3137 1906 148 10 3 chr9 20308157 20308448 -97554179 + AluJb SINE Alu 1 293 -19 2223 121 0 0 chr9 20308821 20309119 -97553508 + AluSx SINE Alu 1 298 -14 323 309 39 73 chr9 20310492 20310759 -97551868 - L2 LINE L2 -276 2996 2737 1173 234 67 41 chr9 20310823 20311258 -97551369 - MLT1J1 LTR MaLR 0 446 1 410 271 132 7 chr9 20312292 20312436 -97550191 + MIR SINE MIR 84 245 -17 249 292 14 0 chr9 20313169 20313241 -97549386 + CT-rich Low_complexity Low_complexity 4 76 0 2121 122 3 3 chr9 20313355 20313651 -97548976 + AluSx SINE Alu 1 296 -16 494 68 27 0 chr9 20313651 20313725 -97548902 + (GGAA)n Simple_repeat Simple_repeat 1 76 0 2497 88 0 0 chr9 20314338 20314643 -97547984 - AluSg SINE Alu -5 305 1 795 209 147 29 chr9 20315225 20315536 -97547091 - L1ME3A LINE L1 -6 6164 5813 397 310 30 0 chr9 20316262 20316362 -97546265 + MIR SINE MIR 21 123 -139 25 0 0 0 chr9 20316808 20316833 -97545794 + AT_rich Low_complexity Low_complexity 1 25 0 370 297 180 2 chr9 20318110 20318281 -97544346 - MIR3 SINE MIR -3 205 5 237 275 9 37 chr9 20318293 20318402 -97544225 + L1MC4 LINE L1 6608 6713 -1329 195 315 72 27 chr9 20319039 20319150 -97543477 + MIR SINE MIR 129 244 -18 460 143 101 92 chr9 20320372 20320491 -97542136 + L1MC1 LINE L1 6201 6320 -13 358 311 50 0 chr9 20322239 20322358 -97540269 - MER117 DNA MER1_type 0 197 73 5264 138 33 1 chr9 20322872 20324059 -97538568 - L1P4 LINE L1 -518 5645 4429 517 252 14 7 chr9 20324118 20324145 -97538482 - L1MA10 LINE L1 -26 6308 6282 3172 234 74 35 chr9 20324145 20325157 -97537470 - L1ME1 LINE L1 -44 6191 5219 5200 121 8 0 chr9 20325157 20325875 -97536752 - L1PA16 LINE L1 -9 6157 5434 3172 234 74 35 chr9 20325875 20326779 -97535848 - L1ME1 LINE L1 -1016 5219 4194 1103 261 53 0 chr9 20326777 20327118 -97535509 - L1M4 LINE L1 -1011 5135 4777 * 591 263 124 11 chr9 20327119 20327305 -97535322 - L1ME1 LINE L1 -5804 592 386 963 180 16 22 chr9 20327306 20327489 -97535138 + MER58A DNA MER1_type 43 224 0 2342 116 45 25 chr9 20327652 20328007 -97534620 - THE1B LTR MaLR 0 364 3 384 22 0 0 chr9 20328008 20328053 -97534574 + (CA)n Simple_repeat Simple_repeat 2 46 0 234 0 0 0 chr9 20328163 20328189 -97534438 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1260 153 8 168 chr9 20328192 20328544 -97534083 + AluJo SINE Alu 1 296 -16 45290 38 1 1 chr9 20328684 20334832 -97527795 - L1PA3 LINE L1 -3 6152 8 394 327 10 0 chr9 20335647 20335751 -97526876 - L2 LINE L2 0 3272 3168 537 347 120 22 chr9 20335751 20336491 -97526136 - L2 LINE L2 0 3272 2480 1112 272 34 68 chr9 20336968 20337518 -97525109 - L2 LINE L2 0 3313 2783 344 222 120 26 chr9 20337833 20337950 -97524677 + MER5B DNA MER1_type 21 148 -30 1053 189 35 0 chr9 20338337 20338538 -97524089 - MER58A DNA MER1_type 0 224 17 269 321 9 37 chr9 20340543 20340652 -97521975 + MIR SINE MIR 157 262 0 4256 163 20 3 chr9 20341042 20341741 -97520886 - MER50 LTR ERV1 -23 711 1 852 246 96 17 chr9 20341796 20342036 -97520591 + MIR SINE MIR 4 262 0 183 295 89 27 chr9 20342360 20342472 -97520155 + MIR SINE MIR 88 206 -56 2561 149 259 14 chr9 20342867 20343451 -97519176 - LTR8A LTR ERV1 0 727 1 282 56 0 0 chr9 20343538 20343574 -97519053 + (TG)n Simple_repeat Simple_repeat 1 36 0 186 133 0 0 chr9 20343871 20343901 -97518726 + (CA)n Simple_repeat Simple_repeat 2 31 0 2104 125 20 0 chr9 20346108 20346405 -97516222 - AluSx SINE Alu -9 303 1 275 248 41 0 chr9 20346776 20346863 -97515764 - L1MC4 LINE L1 0 8041 7905 1567 247 126 25 chr9 20346912 20347908 -97514719 - L1MC4 LINE L1 -314 7728 6459 552 341 88 6 chr9 20348636 20348727 -97513900 + L1ME LINE L1 5391 5473 -648 2359 185 88 4 chr9 20348727 20349191 -97513436 - MLT1D LTR MaLR 0 505 3 552 341 88 6 chr9 20349191 20349451 -97513176 + L1ME LINE L1 5473 5771 -350 675 78 0 48 chr9 20349485 20349588 -97513039 - L1PB3 LINE L1 0 6154 6057 1098 210 56 9 chr9 20349969 20350183 -97512444 + MER58A DNA MER1_type 1 224 0 4135 30 4 0 chr9 20354692 20355152 -97507475 - L1PA4 LINE L1 -3 6152 5691 858 285 116 32 chr9 20356348 20356814 -97505813 - MLT1J LTR MaLR -6 505 1 2228 90 3 3 chr9 20357284 20357573 -97505054 - AluSg SINE Alu -21 289 1 1192 254 70 16 chr9 20357649 20358137 -97504490 - L1MEc LINE L1 -5200 1196 683 830 319 57 53 chr9 20358172 20358526 -97504101 - L1MEc LINE L1 -5789 607 249 2775 140 35 28 chr9 20358526 20358990 -97503637 + MLT1C LTR MaLR 1 467 0 830 319 57 53 chr9 20358990 20359200 -97503427 - L1MEc LINE L1 -6147 249 41 467 265 145 51 chr9 20359205 20359578 -97503049 - L1MDa LINE L1 -4621 1459 1052 1362 279 115 54 chr9 20359581 20360529 -97502098 - L1MDa LINE L1 -5055 1015 10 309 381 6 6 chr9 20360948 20361124 -97501503 + L2 LINE L2 1986 2161 -1153 516 127 223 48 chr9 20361811 20361977 -97500650 - LTR50 LTR ERVL -45 750 556 14583 168 48 5 chr9 20361986 20365949 -97496678 - L1PB1 LINE L1 -1 6866 2379 276 30 0 0 chr9 20365949 20365982 -97496645 + (TG)n Simple_repeat Simple_repeat 1 33 0 14583 168 48 5 chr9 20365982 20368469 -97494158 - L1PB1 LINE L1 -4488 2379 1 512 213 186 11 chr9 20368487 20368675 -97493952 - LTR50 LTR ERVL -317 478 258 14862 125 45 7 chr9 20369117 20371425 -97491202 - Tigger1 DNA MER2_type -23 2395 1 2073 137 13 7 chr9 20372359 20372658 -97489969 + AluJo SINE Alu 1 301 -11 492 262 28 108 chr9 20372770 20373081 -97489546 - MLT1H LTR MaLR 0 549 152 4814 182 45 12 chr9 20373081 20374741 -97487886 - L1MB3 LINE L1 -12 6171 4446 575 107 12 0 chr9 20374750 20374834 -97487793 - MSTC LTR MaLR -2 394 310 603 172 131 16 chr9 20374926 20375048 -97487579 - MSTC LTR MaLR -292 136 1 283 183 98 0 chr9 20375049 20375131 -97487496 - L1MB3 LINE L1 -1708 4438 4349 225 317 70 21 chr9 20375131 20375273 -97487354 - MLT1H LTR MaLR -372 177 29 259 241 115 23 chr9 20375510 20375597 -97487030 + MIR3 SINE MIR 81 175 -33 909 133 0 8 chr9 20375652 20375780 -97486847 + AluSx SINE Alu 1 127 -186 573 192 0 0 chr9 20375782 20375902 -97486725 + (TA)n Simple_repeat Simple_repeat 1 120 0 288 250 0 0 chr9 20375907 20375959 -97486668 + AluSx SINE Alu 123 174 -126 525 152 20 20 chr9 20375959 20376058 -97486569 + AluJo/FRAM SINE Alu 209 307 -5 1702 193 16 25 chr9 20376112 20376480 -97486147 - MLT1A1 LTR MaLR 0 365 1 230 300 150 7 chr9 20378905 20379045 -97483582 - MIR SINE MIR -12 250 91 563 231 173 54 chr9 20381506 20381896 -97480731 - MLT1D LTR MaLR -29 438 3 299 320 204 0 chr9 20383127 20383274 -97479353 - MER5A DNA MER1_type 0 189 13 184 326 102 27 chr9 20383688 20383835 -97478792 - L2 LINE L2 -448 2866 2709 727 207 41 28 chr9 20383849 20383994 -97478633 + AluJb SINE Alu 135 281 -31 442 312 144 50 chr9 20384077 20384811 -97477816 - L2 LINE L2 -700 2614 1812 299 350 45 16 chr9 20384869 20385115 -97477512 + L1M4 LINE L1 -254 4294967294 -6282 594 233 264 24 chr9 20385254 20385584 -97477043 + L1M4 LINE L1 540 948 -5436 2045 200 108 0 chr9 20385587 20386077 -97476550 + L1M4 LINE L1 1054 1596 -4788 4106 228 57 52 chr9 20386080 20387543 -97475084 + L1M2 LINE L1 2 1860 -4978 2130 109 0 43 chr9 20387543 20387846 -97474781 + AluSg SINE Alu 1 290 -20 4106 228 57 52 chr9 20387846 20388235 -97474392 + L1M2 LINE L1 1860 2245 -4593 9265 153 56 6 chr9 20388235 20390577 -97472050 + L1PA11 LINE L1 3759 6174 0 827 180 132 6 chr9 20390627 20390794 -97471833 + MSTB LTR MaLR 185 372 -54 2810 235 148 21 chr9 20390808 20392569 -97470058 + L1M4 LINE L1 1583 3574 -2808 1929 132 68 7 chr9 20392570 20392865 -97469762 + AluSq SINE Alu 1 313 0 370 281 40 53 chr9 20392935 20393163 -97469464 + L1ME3A LINE L1 5832 6056 -114 756 168 16 0 chr9 20393173 20393298 -97469329 - MER45A DNA AcHobo 0 178 52 1077 163 101 53 chr9 20393336 20393563 -97469064 + MER8 DNA MER2_type 1 238 -1 1035 179 6 0 chr9 20393612 20393780 -97468847 - FAM SINE Alu -6 169 1 2032 149 10 0 chr9 20393834 20394130 -97468497 + AluSx SINE Alu 1 299 -13 986 124 0 0 chr9 20394166 20394311 -97468316 + AluJb SINE Alu 168 312 0 268 340 0 38 chr9 20396111 20396217 -97466410 - MIR SINE MIR -62 146 45 366 217 264 8 chr9 20401076 20401205 -97461422 - MIR SINE MIR -68 194 33 688 144 0 0 chr9 20402037 20402141 -97460486 + AluSg/x SINE Alu 193 296 -16 1313 167 132 21 chr9 20402371 20402652 -97459975 + AluJo SINE Alu 1 312 0 450 185 0 25 chr9 20404313 20404393 -97458234 + Tigger5 DNA MER2_type 1 78 -2245 313 304 0 0 chr9 20404393 20404472 -97458155 - Tigger5 DNA MER2_type -3 2320 2242 292 269 51 0 chr9 20404462 20404540 -97458087 + Tigger5 DNA MER2_type 2242 2323 0 * 240 309 73 18 chr9 20404916 20405026 -97457601 - L2 LINE L2 -40 3232 3117 1081 172 98 130 chr9 20405523 20405900 -97456727 + MLT1A1 LTR MaLR 1 365 0 26 30 0 0 chr9 20406849 20406882 -97455745 + AT_rich Low_complexity Low_complexity 1 33 0 604 258 87 110 chr9 20407466 20408345 -97454282 + L2 LINE L2 2387 3313 0 516 95 0 0 chr9 20408385 20408469 -97454158 + (GGGA)n Simple_repeat Simple_repeat 1 84 0 369 43 0 0 chr9 20409261 20409308 -97453319 + (CA)n Simple_repeat Simple_repeat 1 47 0 248 240 130 10 chr9 20409532 20409632 -97452995 + MIR SINE MIR 81 192 -70 838 290 37 65 chr9 20410024 20410348 -97452279 + MLT1K LTR MaLR 11 325 -263 492 218 49 56 chr9 20410375 20410517 -97452110 + MLT1K LTR MaLR 395 535 -53 693 191 7 7 chr9 20410548 20410684 -97451943 + MER103 DNA DNA 31 166 0 1965 87 4 15 chr9 20412440 20412705 -97449922 + AluY SINE Alu 43 304 -7 23 54 0 0 chr9 20414644 20414681 -97447946 + AT_rich Low_complexity Low_complexity 1 37 0 368 256 163 37 chr9 20414782 20414997 -97447630 - MIR SINE MIR -11 251 10 2259 69 0 0 chr9 20415150 20415424 -97447203 - AluY SINE Alu -1 310 37 455 281 25 59 chr9 20415701 20415939 -97446688 + HAL1 LINE L1 2278 2507 0 314 286 12 0 chr9 20416092 20416176 -97446451 + MIR SINE MIR 37 121 -87 641 298 66 0 chr9 20419286 20419514 -97443113 - MIR SINE MIR -12 250 8 585 279 48 22 chr9 20419522 20419751 -97442876 - MIR SINE MIR -8 254 20 2501 67 3 0 chr9 20420148 20420446 -97442181 - AluSp SINE Alu -14 299 1 4964 219 58 40 chr9 20420664 20423009 -97439618 - L1MB7 LINE L1 -9 6175 3800 2550 248 88 46 chr9 20423065 20423412 -97439215 - L1M4c LINE L1 -4461 2183 1852 2427 56 0 3 chr9 20423412 20423721 -97438906 + AluY SINE Alu 1 308 0 2550 248 88 46 chr9 20423721 20424562 -97438065 - L1M4c LINE L1 -4792 1852 888 1485 127 100 63 chr9 20424562 20424861 -97437766 - AluSq SINE Alu -3 310 1 2550 248 88 46 chr9 20424861 20425042 -97437585 - L1M4c LINE L1 -5756 888 716 271 268 25 109 chr9 20425160 20425399 -97437228 - L1M4c LINE L1 -5827 715 497 439 290 27 27 chr9 20425565 20425786 -97436841 - L1M4c LINE L1 -6300 242 22 1515 216 30 49 chr9 20427172 20427542 -97435085 + MLT1A1 LTR MaLR 1 363 -2 2166 142 58 31 chr9 20427889 20428306 -97434321 - MSTA LTR MaLR 0 428 1 432 97 0 0 chr9 20428453 20428515 -97434112 + (TG)n Simple_repeat Simple_repeat 2 63 0 275 279 168 60 chr9 20429025 20429323 -97433304 - L2 LINE L2 -77 3195 2866 712 217 152 23 chr9 20430531 20430748 -97431879 + L1ME3A LINE L1 5914 6158 -12 1250 229 45 30 chr9 20430856 20431192 -97431435 - MER58B DNA MER1_type 0 341 1 1859 251 90 66 chr9 20435399 20435642 -97426985 + L1ME LINE L1 67 303 -5767 2350 103 3 0 chr9 20435642 20435953 -97426674 + AluSp SINE Alu 1 312 -1 1859 251 90 66 chr9 20435953 20436645 -97425982 + L1ME LINE L1 303 1024 -5046 21 0 0 0 chr9 20436874 20436895 -97425732 + AT_rich Low_complexity Low_complexity 1 21 0 1176 196 5 0 chr9 20438910 20439114 -97423513 + AluJo SINE Alu 88 292 -20 194 306 0 42 chr9 20441161 20441233 -97421394 + L2 LINE L2 2995 3063 -250 1939 166 0 0 chr9 20443989 20444284 -97418343 - AluJb SINE Alu -17 295 1 190 337 0 50 chr9 20444284 20444385 -97418242 - MIR3 SINE MIR -6 202 107 1263 121 61 103 chr9 20444613 20444698 -97417929 - MER33 DNA MER1_type -2269 316 229 901 183 55 0 chr9 20444698 20444862 -97417765 + FAM SINE Alu 1 173 -2 1263 121 61 103 chr9 20444862 20445106 -97417521 - MER33 DNA MER1_type -2356 229 1 1852 149 3 36 chr9 20445587 20445896 -97416731 - AluJo SINE Alu -12 300 2 473 301 57 0 chr9 20446194 20446370 -97416257 + MIR SINE MIR 10 195 -67 565 297 59 14 chr9 20446426 20446648 -97415979 - MIR SINE MIR -13 249 18 274 264 164 0 chr9 20446961 20447071 -97415556 - MIR3 SINE MIR -13 195 68 2002 147 0 0 chr9 20447789 20448081 -97414546 + AluSx SINE Alu 1 292 -20 241 326 22 0 chr9 20448232 20448321 -97414306 + MER117 DNA MER1_type 41 131 -66 2065 135 0 0 chr9 20449147 20449436 -97413191 + AluSq SINE Alu 12 300 -13 1712 163 7 18 chr9 20450160 20450442 -97412185 + AluJb SINE Alu 18 296 -16 766 227 21 41 chr9 20450455 20450697 -97411930 + L1ME2 LINE L1 5893 6129 -35 980 164 0 34 chr9 20450810 20450987 -97411640 - AluJb SINE Alu -10 302 132 6599 50 91 5 chr9 20450988 20451705 -97410922 - L1PA7 LINE L1 -2 6152 5392 2274 126 0 0 chr9 20451705 20452015 -97410612 - AluSp SINE Alu -3 310 1 6599 50 91 5 chr9 20452015 20452268 -97410359 - L1PA7 LINE L1 -762 5392 5162 30604 123 21 66 chr9 20452268 20457860 -97404767 - L1P LINE L1 -802 5344 3 873 159 0 0 chr9 20457860 20457992 -97404635 - AluJb SINE Alu -180 132 1 2271 120 0 0 chr9 20458240 20458541 -97404086 - AluSq SINE Alu -12 301 1 191 270 108 0 chr9 20459289 20459363 -97403264 + L2 LINE L2 3186 3267 -5 241 224 118 0 chr9 20462107 20462183 -97400444 - MIR SINE MIR -3 259 175 1026 236 138 15 chr9 20463807 20464214 -97398413 + L1MC4 LINE L1 6467 6923 -1119 380 326 27 74 chr9 20464472 20464730 -97397897 - MIR SINE MIR -12 250 5 1855 155 3 10 chr9 20464851 20465155 -97397472 + AluSx SINE Alu 2 303 -9 374 280 93 20 chr9 20465797 20465947 -97396680 - MIR SINE MIR -12 250 90 837 179 0 0 chr9 20466837 20466971 -97395656 + FRAM SINE Alu 6 139 -37 1402 131 0 0 chr9 20467738 20467937 -97394690 + AluSg/x SINE Alu 104 302 -10 2333 92 0 3 chr9 20467947 20468242 -97394385 + AluSc SINE Alu 7 300 -9 235 100 40 0 chr9 20468243 20468293 -97394334 + L1MB3 LINE L1 6132 6183 0 1313 210 30 88 chr9 20468525 20468849 -97393778 + MER58B DNA MER1_type 1 303 -2117 1891 138 13 33 chr9 20468849 20469153 -97393474 - AluJb SINE Alu -14 298 1 1313 210 30 88 chr9 20469153 20469190 -97393437 + MER58B DNA MER1_type 303 341 0 259 268 0 28 chr9 20469444 20469515 -97393112 + MLT1J LTR MaLR 1 69 -442 27 0 0 0 chr9 20469925 20469952 -97392675 + AT_rich Low_complexity Low_complexity 1 27 0 246 256 93 2 chr9 20470512 20470625 -97392002 - MIR SINE MIR -71 137 17 207 284 138 17 chr9 20471696 20471812 -97390815 - L2 LINE L2 -195 3077 2948 1787 133 83 42 chr9 20471845 20472205 -97390422 - THE1C LTR MaLR 0 375 1 * 3555 119 24 53 chr9 20472205 20472824 -97389803 - Tigger1 DNA MER2_type -498 1920 1320 225 0 0 0 chr9 20473027 20473052 -97389575 + (CA)n Simple_repeat Simple_repeat 1 25 0 266 312 35 28 chr9 20473437 20473578 -97389049 - MIR SINE MIR -55 207 66 658 226 15 15 chr9 20473893 20474026 -97388601 + AluJb SINE Alu 135 267 -45 2945 102 41 12 chr9 20474043 20474446 -97388181 + MER1A DNA MER1_type 1 391 -2311 1935 140 0 11 chr9 20474446 20474725 -97387902 + AluSx SINE Alu 1 276 -36 3638 70 0 6 chr9 20474725 20475196 -97387431 + L1PA6 LINE L1 5681 6148 -6 823 208 39 6 chr9 20475307 20475485 -97387142 - MLT1B LTR MaLR -206 184 1 842 103 0 0 chr9 20475685 20475792 -97386835 - AluSp/q SINE Alu -19 294 188 1572 138 5 0 chr9 20475792 20476010 -97386617 - AluSp SINE Alu -94 219 1 1804 65 0 0 chr9 20476017 20476246 -97386381 - L1PA8 LINE L1 -4 6168 5940 238 250 77 0 chr9 20477577 20477681 -97384946 + MIR3 SINE MIR 91 202 -6 2051 148 3 0 chr9 20478708 20479012 -97383615 + AluSq SINE Alu 1 305 -8 363 239 99 24 chr9 20479017 20479187 -97383440 - L1MC5 LINE L1 -44 7917 7726 1743 174 101 0 chr9 20479187 20479503 -97383124 - MER7A DNA MER2_type 0 346 1 363 239 99 24 chr9 20479503 20479545 -97383082 - L1MC5 LINE L1 -235 7726 7689 * 1484 195 46 20 chr9 20479510 20479859 -97382768 + L1 LINE L1 3890 4247 -1899 13091 150 23 24 chr9 20479887 20482167 -97380460 + L1P LINE L1 11 2288 -3858 1464 197 34 50 chr9 20482187 20483494 -97379133 + SVA Other Other 432 866 -520 27 0 0 0 chr9 20483604 20483631 -97378996 + AT_rich Low_complexity Low_complexity 1 27 0 22929 74 28 5 chr9 20483631 20484295 -97378332 + L1PA6 LINE L1 2273 2920 -3234 2344 82 10 0 chr9 20484295 20484588 -97378039 + AluY SINE Alu 1 296 -15 22929 74 28 5 chr9 20484588 20487791 -97374836 + L1PA6 LINE L1 2920 6153 -1 1921 204 48 20 chr9 20487817 20488313 -97374314 + L1 LINE L1 4256 4765 -1381 1960 156 0 7 chr9 20488986 20489288 -97373339 - AluJb SINE Alu -12 300 1 342 252 199 8 chr9 20490021 20490152 -97372475 - MIR SINE MIR -1 261 106 2491 75 0 0 chr9 20491009 20491302 -97371325 - AluSc SINE Alu -15 294 2 326 0 0 0 chr9 20492322 20492357 -97370270 - U2 snRNA snRNA -153 35 1 290 250 162 40 chr9 20492596 20492700 -97369927 - Charlie8 DNA MER1_type -2174 243 114 2446 98 0 0 chr9 20492700 20493006 -97369621 - AluSx SINE Alu -6 306 1 290 250 162 40 chr9 20493006 20493049 -97369578 - Charlie8 DNA MER1_type -2303 114 78 2132 108 7 3 chr9 20493340 20493637 -97368990 + AluSq SINE Alu 3 300 -13 36 0 0 0 chr9 20493638 20493674 -97368953 + AT_rich Low_complexity Low_complexity 1 36 0 1439 198 0 26 chr9 20494357 20494495 -97368132 - AluJo SINE Alu -44 268 139 2124 143 3 0 chr9 20494495 20494802 -97367825 - AluSx SINE Alu -4 308 1 1439 198 0 26 chr9 20494802 20494936 -97367691 - AluJo SINE Alu -173 139 3 459 283 56 17 chr9 20495004 20495184 -97367443 + MER5A DNA MER1_type 3 189 0 316 263 94 64 chr9 20495468 20495639 -97366988 + LTR67 LTR ERVL 382 557 0 1898 188 0 0 chr9 20495820 20496129 -97366498 + AluJb SINE Alu 1 309 -3 2379 99 3 0 chr9 20496763 20497067 -97365560 + AluSp SINE Alu 2 306 -7 936 303 150 22 chr9 20497264 20497380 -97365247 - L3 LINE CR1 -19 1558 1458 1829 147 10 10 chr9 20497380 20497687 -97364940 + AluSx SINE Alu 1 307 -5 936 303 150 22 chr9 20497687 20498284 -97364343 - L3 LINE CR1 -119 1458 754 1305 145 13 31 chr9 20498405 20498633 -97363994 - AluJb SINE Alu -82 230 7 808 228 19 102 chr9 20498638 20498963 -97363664 - L3 LINE CR1 -812 765 468 5057 82 1 59 chr9 20499654 20500384 -97362243 + LTR12 LTR ERV1 1 688 0 8652 82 25 29 chr9 20500689 20500786 -97361841 + THE1A-int LTR MaLR 397 493 -1087 2335 48 14 0 chr9 20500786 20501076 -97361551 + L1PA7 LINE L1 5861 6154 0 8652 82 25 29 chr9 20501076 20502166 -97360461 + THE1A-int LTR MaLR 493 1580 0 2377 102 17 14 chr9 20502168 20502520 -97360107 + THE1A LTR MaLR 3 355 0 202 275 220 0 chr9 20502661 20502752 -97359875 - MIR SINE MIR -111 151 41 6609 32 1 1 chr9 20502805 20503576 -97359051 + L1PA3 LINE L1 5382 6152 -3 258 139 0 0 chr9 20503585 20503628 -97358999 - MIR SINE MIR -187 75 33 23 0 0 0 chr9 20504274 20504297 -97358330 + AT_rich Low_complexity Low_complexity 1 23 0 1428 166 28 3 chr9 20504936 20505219 -97357408 + L1MA4 LINE L1 6000 6289 -11 269 247 99 0 chr9 20505370 20505451 -97357176 + MIR3 SINE MIR 111 199 -9 1946 111 7 4 chr9 20505705 20505984 -97356643 + AluSx SINE Alu 20 299 -13 391 182 104 0 chr9 20505997 20506074 -97356553 + L1MEc LINE L1 597 681 -5715 272 217 14 14 chr9 20506179 20506248 -97356379 - MER5B DNA MER1_type -108 70 2 247 297 230 0 chr9 20506371 20506519 -97356108 - MIR SINE MIR -7 255 74 811 213 46 0 chr9 20508144 20508318 -97354309 - MER5A DNA MER1_type -5 184 3 690 222 102 0 chr9 20508722 20508889 -97353738 + MER58 DNA MER1_type 2 185 -156 461 195 0 0 chr9 20508913 20508995 -97353632 + MER58 DNA MER1_type 2337 2418 -2 2137 108 72 12 chr9 20509559 20509894 -97352733 + THE1A LTR MaLR 1 355 0 2592 86 6 0 chr9 20509894 20510243 -97352384 + THE1A-int LTR MaLR 1 351 -1229 2926 73 8 5 chr9 20510343 20510724 -97351903 + THE1A-int LTR MaLR 1199 1580 0 2377 102 17 14 chr9 20510726 20511078 -97351549 + THE1A LTR MaLR 3 355 0 202 275 220 0 chr9 20511219 20511310 -97351317 - MIR SINE MIR -111 151 41 6743 29 1 0 chr9 20511363 20512136 -97350491 + L1PA3 LINE L1 5382 6155 0 23 0 0 0 chr9 20512195 20512218 -97350409 + AT_rich Low_complexity Low_complexity 1 23 0 471 99 0 0 chr9 20512452 20512523 -97350104 + Alu SINE Alu 234 304 -8 560 184 0 0 chr9 20512523 20512626 -97350001 + L1M4 LINE L1 3746 3848 -2298 2223 110 0 0 chr9 20513104 20513395 -97349232 - AluSq SINE Alu -22 291 1 1785 153 0 4 chr9 20513763 20514031 -97348596 + AluSx SINE Alu 37 303 -9 761 257 67 4 chr9 20514038 20514307 -97348320 + L1ME1 LINE L1 5872 6178 0 7305 128 9 16 chr9 20514330 20515947 -97346680 + L1MA2 LINE L1 4161 5789 -515 2181 128 3 0 chr9 20515947 20516253 -97346374 + AluSp SINE Alu 1 307 -6 1866 169 0 10 chr9 20516256 20516552 -97346075 + AluJb SINE Alu 1 293 -19 7305 128 9 16 chr9 20516552 20516851 -97345776 + L1MA2 LINE L1 5791 6091 -213 1927 159 0 3 chr9 20516851 20517146 -97345481 + AluJb SINE Alu 1 294 -18 7305 128 9 16 chr9 20517146 20517229 -97345398 + L1MA2 LINE L1 6091 6173 -131 2139 118 21 0 chr9 20517229 20517517 -97345110 + AluSx SINE Alu 1 294 -18 7305 128 9 16 chr9 20517517 20517670 -97344957 + L1MA2 LINE L1 6173 6304 0 2120 224 108 108 chr9 20517768 20517951 -97344676 + HAL1 LINE L1 12 194 -2313 2422 52 3 3 chr9 20517951 20518238 -97344389 + AluY SINE Alu 4 290 -21 2120 224 108 108 chr9 20518238 20518395 -97344232 + HAL1 LINE L1 194 350 -2157 3016 6 0 0 chr9 20518395 20518713 -97343914 + AluYb8 SINE Alu 1 318 0 2120 224 108 108 chr9 20518713 20519261 -97343366 + HAL1 LINE L1 350 904 -1603 1497 82 34 5 chr9 20519261 20519469 -97343158 + AluSp SINE Alu 90 303 -10 2120 224 108 108 chr9 20519469 20519748 -97342879 + HAL1 LINE L1 903 1181 -1326 914 144 11 58 chr9 20519756 20519779 -97342848 + AluJo SINE Alu 120 143 -169 2354 81 3 23 chr9 20519779 20520086 -97342541 + AluSp SINE Alu 1 301 -12 914 144 11 58 chr9 20520086 20520250 -97342377 + AluJo SINE Alu 143 298 -14 1154 137 0 16 chr9 20520256 20520270 -97342357 + AluSg/x SINE Alu 118 131 -178 2135 136 0 0 chr9 20520270 20520579 -97342048 + AluSx SINE Alu 1 309 -3 1154 137 0 16 chr9 20520579 20520747 -97341880 + AluSg/x SINE Alu 131 297 -12 1232 239 172 29 chr9 20520750 20521297 -97341330 + HAL1 LINE L1 1195 1819 -688 237 150 350 0 chr9 20521307 20521367 -97341260 + HAL1 LINE L1 1886 1966 -541 2135 101 31 0 chr9 20521548 20521835 -97340792 + AluSx SINE Alu 1 296 -16 429 298 95 0 chr9 20521969 20522137 -97340490 + MIR SINE MIR 1 184 -78 619 261 48 34 chr9 20524545 20524678 -97337949 + MIR SINE MIR 26 165 -97 1764 167 13 30 chr9 20524678 20524983 -97337644 + AluJo SINE Alu 1 300 -12 619 261 48 34 chr9 20524983 20525056 -97337571 + MIR SINE MIR 165 235 -27 366 199 320 17 chr9 20525131 20525312 -97337315 - MIR SINE MIR -18 244 9 1702 148 33 13 chr9 20525353 20525656 -97336971 - AluSx SINE Alu -2 310 2 2089 108 20 7 chr9 20525966 20526271 -97336356 - AluSx SINE Alu -2 310 2 200 329 0 13 chr9 20527818 20527897 -97334730 + (TATATG)n Simple_repeat Simple_repeat 2 79 0 21 0 0 0 chr9 20527926 20527947 -97334680 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr9 20528768 20528796 -97333831 + AT_rich Low_complexity Low_complexity 1 28 0 28 29 0 0 chr9 20529518 20529553 -97333074 + AT_rich Low_complexity Low_complexity 1 35 0 1981 158 0 0 chr9 20530575 20530878 -97331749 - AluJo SINE Alu -9 303 1 358 174 31 61 chr9 20530985 20531083 -97331544 - L1MC5 LINE L1 -36 7925 7831 2057 161 83 40 chr9 20531089 20531537 -97331090 + MLT1C LTR MaLR 1 467 0 1007 197 43 14 chr9 20533282 20533490 -97329137 - MER58A DNA MER1_type -6 218 5 2326 88 3 10 chr9 20534857 20535163 -97327464 + AluSp SINE Alu 1 304 -9 1743 201 0 0 chr9 20535530 20535828 -97326799 + AluJo SINE Alu 1 298 -14 1586 174 10 23 chr9 20536635 20536939 -97325688 - AluJb SINE Alu -8 304 5 23 0 0 0 chr9 20537428 20537451 -97325176 + AT_rich Low_complexity Low_complexity 1 23 0 2328 98 3 3 chr9 20537939 20538245 -97324382 - AluSp SINE Alu -7 306 1 1667 122 0 17 chr9 20538733 20538970 -97323657 - AluSx SINE Alu -79 233 1 603 142 150 0 chr9 20538971 20539098 -97323529 + L1MB4 LINE L1 6005 6150 -30 2255 118 7 0 chr9 20539112 20539418 -97323209 - AluSx SINE Alu -4 308 1 2057 113 35 0 chr9 20539704 20539988 -97322639 - AluSx SINE Alu -16 296 3 880 115 8 0 chr9 20540821 20540943 -97321684 + AluSq/x SINE Alu 1 123 -189 1718 182 3 0 chr9 20541507 20541798 -97320829 + AluJo SINE Alu 10 301 -11 2401 37 44 10 chr9 20541798 20542091 -97320536 + AluY SINE Alu 1 304 -7 2374 110 0 0 chr9 20542267 20542576 -97320051 + AluSq SINE Alu 3 311 -2 1932 127 25 0 chr9 20542795 20543070 -97319557 + AluSx SINE Alu 10 291 -21 1441 107 5 0 chr9 20543071 20543267 -97319360 + AluSp SINE Alu 29 225 -88 752 157 0 0 chr9 20543370 20543485 -97319142 - AluJb SINE Alu -195 117 3 2128 83 0 66 chr9 20543518 20543819 -97318808 - AluSx SINE Alu -11 301 21 724 206 187 0 chr9 20543819 20544033 -97318594 - MIR SINE MIR -6 256 3 2344 76 0 0 chr9 20544718 20545008 -97317619 + AluSx SINE Alu 5 294 -18 243 0 0 0 chr9 20545012 20545039 -97317588 + (TA)n Simple_repeat Simple_repeat 1 27 0 2125 116 3 22 chr9 20545072 20545390 -97317237 + AluSx SINE Alu 1 312 0 2230 128 0 0 chr9 20546543 20546855 -97315772 + AluSx SINE Alu 1 312 0 204 114 0 68 chr9 20546932 20546976 -97315651 - MIR SINE MIR -101 161 121 21 0 0 0 chr9 20547016 20547037 -97315590 + AT_rich Low_complexity Low_complexity 1 21 0 229 195 363 0 chr9 20547358 20547471 -97315156 + MER5A DNA MER1_type 15 168 -21 662 172 52 0 chr9 20547588 20547704 -97314923 + FLAM_C SINE Alu 11 132 -11 318 83 50 17 chr9 20548525 20548614 -97314013 + Alu SINE Alu 240 330 0 301 202 67 42 chr9 20548636 20548755 -97313872 + L1MC4a LINE L1 6056 6177 -1631 2292 115 0 6 chr9 20548756 20549070 -97313557 + AluSx SINE Alu 1 312 0 1072 254 71 24 chr9 20549570 20549948 -97312679 + LTR16B LTR ERVL 1 396 -68 1048 126 0 7 chr9 20550177 20550320 -97312307 + AluSq/x SINE Alu 1 142 -170 2204 105 6 6 chr9 20550555 20550868 -97311759 - AluSq SINE Alu 0 313 1 2204 123 3 0 chr9 20550878 20551188 -97311439 - AluY SINE Alu 0 311 1 1269 123 0 0 chr9 20551549 20551720 -97310907 - AluSg/x SINE Alu -12 300 130 2099 122 23 0 chr9 20551733 20552036 -97310591 - AluSx SINE Alu -2 310 1 2102 122 27 0 chr9 20552038 20552333 -97310294 - AluSx SINE Alu -9 303 1 2117 121 3 10 chr9 20552687 20552993 -97309634 + AluSx SINE Alu 1 304 -8 297 0 0 0 chr9 20552993 20553026 -97309601 + (CA)n Simple_repeat Simple_repeat 2 34 0 872 127 0 15 chr9 20553343 20553477 -97309150 - FLAM_C SINE Alu -1 132 1 1883 116 4 0 chr9 20553806 20554064 -97308563 - AluSq SINE Alu -19 294 36 2383 96 3 0 chr9 20554218 20554519 -97308108 - AluSx SINE Alu -10 302 1 247 333 113 7 chr9 20554527 20554668 -97307959 - MIR SINE MIR -48 214 59 2061 149 0 0 chr9 20554668 20554970 -97307657 - AluJb SINE Alu -10 302 1 1950 130 3 20 chr9 20555114 20555279 -97307348 - AluSx SINE Alu -16 296 137 2373 103 0 3 chr9 20555279 20555590 -97307037 - AluSg SINE Alu 0 310 1 1950 130 3 20 chr9 20555590 20555724 -97306903 - AluSx SINE Alu -175 137 2 1603 182 0 4 chr9 20555793 20556057 -97306570 + AluJb SINE Alu 35 297 -15 1332 173 5 5 chr9 20556163 20556383 -97306244 - AluSx SINE Alu -92 220 1 851 196 20 67 chr9 20556386 20556562 -97306065 + L2 LINE L2 2418 2580 -734 2149 122 20 0 chr9 20556562 20556856 -97305771 - AluSx SINE Alu -12 300 1 851 196 20 67 chr9 20556856 20556934 -97305693 + L2 LINE L2 2580 2660 -654 2325 100 112 45 chr9 20556982 20557142 -97305485 + MSTA LTR MaLR 1 149 -279 2360 92 0 19 chr9 20557142 20557457 -97305170 - AluSg1 SINE Alu 0 309 1 2325 100 112 45 chr9 20557457 20557697 -97304930 + MSTA LTR MaLR 149 428 0 24 0 0 0 chr9 20557701 20557725 -97304902 + AT_rich Low_complexity Low_complexity 1 24 0 2396 108 45 66 chr9 20557725 20558091 -97304536 - L1PA16 LINE L1 -9 6157 5800 2394 92 3 3 chr9 20558091 20558394 -97304233 - AluSg SINE Alu -7 303 1 2396 108 45 66 chr9 20558394 20558451 -97304176 - L1PA16 LINE L1 -366 5800 5743 1322 200 28 2 chr9 20558451 20558732 -97303895 - L1P LINE L1 -1889 4257 3975 421 296 108 23 chr9 20558750 20558926 -97303701 + L2 LINE L2 2726 2916 -398 478 88 0 38 chr9 20558948 20559028 -97303599 - Alu SINE Alu -1 311 235 1840 97 4 0 chr9 20559128 20559375 -97303252 + AluSp SINE Alu 66 313 0 267 242 211 0 chr9 20559404 20559499 -97303128 + MIR SINE MIR 148 262 0 252 0 0 0 chr9 20559507 20559535 -97303092 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 209 343 15 0 chr9 20560044 20560111 -97302516 - MIR SINE MIR -166 96 29 331 232 9 80 chr9 20560132 20560244 -97302383 + MIR3 SINE MIR 83 186 -22 2198 129 0 0 chr9 20560406 20560716 -97301911 - AluSg SINE Alu 0 310 1 2299 103 13 0 chr9 20560716 20561017 -97301610 - AluSx SINE Alu -6 306 1 358 160 0 37 chr9 20561759 20561839 -97300788 - Alu SINE Alu 0 302 240 272 176 20 0 chr9 20562033 20562084 -97300543 - MER57A LTR ERV1 -68 335 284 189 322 22 11 chr9 20562128 20562218 -97300409 + MIR SINE MIR 145 235 -27 2225 100 0 16 chr9 20562219 20562529 -97300098 - AluSc SINE Alu -4 305 1 287 339 8 31 chr9 20562672 20562802 -97299825 - MER5A DNA MER1_type 0 189 63 709 159 0 9 chr9 20562828 20562941 -97299686 - FLAM_C SINE Alu -21 122 11 2291 104 0 0 chr9 20563282 20563580 -97299047 + AluSg SINE Alu 4 301 -9 2297 84 0 3 chr9 20563585 20563901 -97298726 + AluSg SINE Alu 1 315 0 2351 93 0 7 chr9 20564414 20564714 -97297913 + AluSg SINE Alu 1 298 -12 231 36 0 0 chr9 20564796 20564824 -97297803 + (TC)n Simple_repeat Simple_repeat 1 28 0 1576 159 45 28 chr9 20565629 20565918 -97296709 + AluJb SINE Alu 13 306 -6 1848 153 3 17 chr9 20566014 20566151 -97296476 + AluSx SINE Alu 1 138 -174 1981 124 38 0 chr9 20566151 20566441 -97296186 + AluSx SINE Alu 1 301 -11 1848 153 3 17 chr9 20566441 20566591 -97296036 + AluSx SINE Alu 138 284 -28 576 174 0 0 chr9 20566596 20566688 -97295939 + AluJo SINE Alu 127 218 -94 479 231 52 23 chr9 20566825 20566983 -97295644 + L1MC/D LINE L1 5392 5553 -568 810 213 0 29 chr9 20566985 20567159 -97295468 + AluJb SINE Alu 2 170 -142 2241 80 3 3 chr9 20567166 20567452 -97295175 + AluSp SINE Alu 24 309 -4 2030 132 30 3 chr9 20567452 20567747 -97294880 + AluSq SINE Alu 1 304 -9 2164 148 0 0 chr9 20568396 20568707 -97293920 + AluSx SINE Alu 1 311 -1 1807 161 39 0 chr9 20569319 20569604 -97293023 + AluSx SINE Alu 1 296 -16 24 0 0 0 chr9 20569671 20569695 -97292932 + AT_rich Low_complexity Low_complexity 1 24 0 239 292 192 0 chr9 20570191 20570321 -97292306 + L1ME4a LINE L1 5967 6121 0 2237 118 0 0 chr9 20571093 20571399 -97291228 + AluSx SINE Alu 2 307 -5 3185 24 1 0 chr9 20571927 20572436 -97290191 + L1P2 LINE L1 5009 5518 -637 1800 156 3 42 chr9 20572763 20573070 -97289557 + AluJo SINE Alu 1 295 -17 2195 115 0 16 chr9 20573741 20574045 -97288582 - AluSp SINE Alu -14 299 1 2038 127 0 33 chr9 20575458 20575765 -97286862 + AluSq SINE Alu 1 297 -16 29 28 0 0 chr9 20575821 20575857 -97286770 + AT_rich Low_complexity Low_complexity 1 36 0 481 227 0 0 chr9 20575866 20575963 -97286664 + AluJ/FLAM SINE Alu 2 98 -214 779 153 23 23 chr9 20575979 20576110 -97286517 - FLAM_C SINE Alu 0 133 3 555 100 11 22 chr9 20576110 20576200 -97286427 - LTR12 LTR ERV1 -625 89 1 709 229 71 92 chr9 20577223 20577619 -97285008 + L1MEd LINE L1 918 1321 -4808 1928 140 27 7 chr9 20577619 20577919 -97284708 - AluJb SINE Alu -6 306 1 709 229 71 92 chr9 20577919 20577971 -97284656 + L1MEd LINE L1 1321 1373 -4756 2000 134 48 0 chr9 20577971 20578263 -97284364 + AluSq SINE Alu 1 306 -7 709 229 71 92 chr9 20578263 20578280 -97284347 + L1MEd LINE L1 1373 1389 -4740 2077 137 14 0 chr9 20578280 20578573 -97284054 + AluSx SINE Alu 1 297 -15 709 229 71 92 chr9 20578573 20578757 -97283870 + L1MEd LINE L1 1389 1553 -4576 21 57 0 0 chr9 20579030 20579065 -97283562 + AT_rich Low_complexity Low_complexity 1 35 0 430 219 0 0 chr9 20579829 20579902 -97282725 - AluJ/FLAM SINE Alu -229 73 1 2423 156 36 24 chr9 20580248 20580748 -97281879 + L1MB8 LINE L1 5672 6177 -1 410 192 41 0 chr9 20580800 20580873 -97281754 + AluJ/FLAM SINE Alu 9 84 -228 1335 149 32 108 chr9 20580888 20581002 -97281625 + L1MB5 LINE L1 5858 5979 -195 2215 107 7 23 chr9 20581002 20581310 -97281317 + AluSx SINE Alu 1 303 -9 1335 149 32 108 chr9 20581310 20581408 -97281219 + L1MB5 LINE L1 5979 6037 -137 1804 142 47 27 chr9 20581408 20581704 -97280923 + AluJb SINE Alu 1 302 -10 1335 149 32 108 chr9 20581704 20581833 -97280794 + L1MB5 LINE L1 6037 6174 0 856 124 0 29 chr9 20582361 20582498 -97280129 + FLAM_C SINE Alu 1 133 0 2198 109 10 0 chr9 20582618 20582911 -97279716 + AluY SINE Alu 1 296 -15 818 137 0 15 chr9 20583279 20583410 -97279217 + AluJb SINE Alu 175 303 -9 370 248 144 7 chr9 20583444 20583597 -97279030 - L1MC/D LINE L1 -2253 5555 5382 267 254 0 14 chr9 20583660 20583731 -97278896 - L2 LINE L2 -211 3061 2992 1583 179 13 23 chr9 20583810 20584111 -97278516 + AluJo SINE Alu 1 298 -14 693 175 0 0 chr9 20584132 20584235 -97278392 + FRAM SINE Alu 44 146 -30 192 97 0 0 chr9 20584237 20584268 -97278359 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 194 88 0 29 chr9 20584507 20584541 -97278086 + (TTCC)n Simple_repeat Simple_repeat 4 36 0 702 168 9 26 chr9 20584545 20584776 -97277851 + CT-rich Low_complexity Low_complexity 1 227 0 1145 168 106 0 chr9 20584776 20584984 -97277643 - AluJb SINE Alu 0 312 83 2171 99 10 3 chr9 20585126 20585419 -97277208 - AluSq SINE Alu -18 295 1 2317 97 0 28 chr9 20585458 20585777 -97276850 - AluSg SINE Alu 0 310 1 431 239 115 0 chr9 20585803 20585916 -97276711 - MIR3 SINE MIR -5 203 78 243 274 216 0 chr9 20586526 20586628 -97275999 - L2 LINE L2 0 3313 3190 2403 107 0 0 chr9 20586674 20586982 -97275645 + AluSx SINE Alu 1 308 -4 707 240 6 0 chr9 20586982 20587161 -97275466 - L2 LINE L2 -717 2597 2418 1856 145 9 35 chr9 20587164 20587481 -97275146 + AluJb SINE Alu 1 309 -3 2247 112 10 0 chr9 20587584 20587880 -97274747 - AluSq SINE Alu -14 299 1 1994 113 41 17 chr9 20587974 20588265 -97274362 - AluSx SINE Alu -14 298 1 2310 100 0 10 chr9 20588270 20588581 -97274046 - AluSx SINE Alu -4 308 1 354 200 105 19 chr9 20588645 20588750 -97273877 - L1MC4a LINE L1 -1973 5835 5722 888 114 8 0 chr9 20588829 20588961 -97273666 - AluJb SINE Alu -2 310 178 1066 172 11 21 chr9 20589195 20589359 -97273268 - AluSg/x SINE Alu -14 296 133 2004 140 0 17 chr9 20589359 20589659 -97272968 - AluSq SINE Alu -18 295 1 1066 172 11 21 chr9 20589659 20589680 -97272947 - AluSg/x SINE Alu -177 133 113 2053 131 0 23 chr9 20589741 20590047 -97272580 - AluSx SINE Alu -13 299 1 366 145 0 0 chr9 20590197 20590259 -97272368 + MER41A LTR ERV1 130 191 -363 617 143 20 0 chr9 20590261 20590359 -97272268 + AluJ/FLAM SINE Alu 2 101 -211 206 0 69 0 chr9 20590359 20590388 -97272239 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 504 222 0 0 chr9 20590613 20590703 -97271924 - FRAM/FAM SINE Alu -87 89 1 1843 157 13 3 chr9 20591230 20591530 -97271097 + AluJb SINE Alu 1 303 -9 2102 109 35 3 chr9 20591864 20592149 -97270478 + AluSx SINE Alu 1 294 -18 1676 132 21 98 chr9 20592383 20592571 -97270056 - AluSx SINE Alu -12 300 146 2114 97 3 32 chr9 20592571 20592882 -97269745 - AluSg SINE Alu -8 302 1 1676 132 21 98 chr9 20592882 20593018 -97269609 - AluSx SINE Alu -166 146 1 2002 139 3 0 chr9 20593213 20593507 -97269120 - AluSx SINE Alu -17 295 1 2531 69 0 0 chr9 20594104 20594410 -97268217 - AluY SINE Alu -5 306 1 243 289 103 26 chr9 20595567 20595723 -97266904 - MIR SINE MIR -77 185 18 231 178 44 0 chr9 20595906 20595951 -97266676 + CT-rich Low_complexity Low_complexity 2 48 0 2043 158 7 0 chr9 20595952 20596262 -97266365 - AluJb SINE Alu 0 312 1 2341 90 0 7 chr9 20596420 20596720 -97265907 - AluSc SINE Alu -11 298 1 344 163 0 0 chr9 20596762 20596811 -97265816 + MER66A LTR ERV1 287 335 -143 1827 110 98 0 chr9 20597532 20597796 -97264831 - AluSx SINE Alu -22 290 1 199 276 133 10 chr9 20598254 20598352 -97264275 + MIR SINE MIR 25 134 -74 678 111 10 0 chr9 20598433 20598556 -97264071 + AluJb SINE Alu 213 336 0 2044 145 7 3 chr9 20598662 20598972 -97263655 + AluSq SINE Alu 1 311 -2 1229 129 0 0 chr9 20598972 20599150 -97263477 + AluSg/x SINE Alu 132 309 -1 1022 115 107 123 chr9 20599287 20599540 -97263087 + MER7A DNA MER2_type 2 248 -98 322 132 55 99 chr9 20599545 20599636 -97262991 + Tigger3(Golem) DNA MER2_type 2844 2930 -99 247 200 0 0 chr9 20599664 20599709 -97262918 + MER1B DNA MER1_type 6 50 -287 903 134 119 64 chr9 20599719 20599921 -97262706 + MER1B DNA MER1_type 127 339 0 445 216 11 0 chr9 20599921 20599985 -97262642 + Tigger3(Golem) DNA MER2_type 2915 2979 -50 2423 75 3 3 chr9 20600446 20600740 -97261887 + AluSc SINE Alu 1 294 -15 2707 173 30 15 chr9 20601306 20601832 -97260795 + L1MB8 LINE L1 5509 6042 -136 742 128 23 8 chr9 20601845 20601978 -97260649 - L1MB4 LINE L1 0 6180 6046 1646 131 4 0 chr9 20601978 20602207 -97260420 + AluSx SINE Alu 1 230 -82 497 173 0 0 chr9 20602208 20602289 -97260338 - AluJ/FLAM SINE Alu -227 85 5 2200 112 20 0 chr9 20602356 20602660 -97259967 + AluSg SINE Alu 1 310 0 4685 123 18 20 chr9 20602983 20603770 -97258857 + L1MA4 LINE L1 5509 6293 -7 1522 132 113 8 chr9 20603772 20604037 -97258590 + AluJo SINE Alu 1 293 -19 679 161 0 46 chr9 20604040 20604170 -97258457 + FLAM_C SINE Alu 13 136 -7 2275 90 0 0 chr9 20604174 20604464 -97258163 + AluSc SINE Alu 1 290 -19 31 0 0 0 chr9 20604633 20604664 -97257963 + AT_rich Low_complexity Low_complexity 1 31 0 195 219 0 0 chr9 20604931 20604972 -97257655 + MIR SINE MIR 217 257 -5 216 266 117 55 chr9 20605804 20605914 -97256713 + L2 LINE L2 270 391 -2923 2483 62 3 10 chr9 20605914 20606223 -97256404 - AluSq SINE Alu -6 307 1 216 266 117 55 chr9 20606223 20606240 -97256387 + L2 LINE L2 390 405 -2909 2711 45 0 0 chr9 20606240 20606549 -97256078 - AluY SINE Alu -2 309 1 2199 112 0 10 chr9 20606551 20606847 -97255780 - AluSx SINE Alu -19 293 1 271 269 0 0 chr9 20606847 20606914 -97255713 - MER5A DNA MER1_type -114 75 9 195 162 0 0 chr9 20607074 20607111 -97255516 + (CA)n Simple_repeat Simple_repeat 2 38 0 1480 150 25 83 chr9 20607117 20607279 -97255348 - AluJb SINE Alu -16 296 159 2292 91 0 10 chr9 20607279 20607586 -97255041 - AluSq SINE Alu -9 304 1 1480 150 25 83 chr9 20607586 20607737 -97254890 - AluJb SINE Alu -153 159 1 703 183 26 0 chr9 20608907 20609060 -97253567 - L1MB7 LINE L1 -3 6181 6025 1897 112 90 0 chr9 20609061 20609329 -97253298 + AluSc SINE Alu 1 292 -17 222 118 0 0 chr9 20610067 20610101 -97252526 + (A)n Simple_repeat Simple_repeat 1 34 0 2691 178 26 12 chr9 20610105 20610427 -97252200 - L1MB7 LINE L1 -161 6013 5680 2098 132 0 0 chr9 20610427 20610715 -97251912 + AluSx SINE Alu 1 288 -24 2691 178 26 12 chr9 20610715 20610899 -97251728 - L1MB7 LINE L1 -494 5680 5500 561 179 9 0 chr9 20610928 20611040 -97251587 - L1MB7 LINE L1 -895 5251 5139 1437 135 26 22 chr9 20611041 20611270 -97251357 + LTR54 LTR ERV1 1 230 -280 818 166 0 0 chr9 20611314 20611459 -97251168 + LTR54 LTR ERV1 366 510 0 609 237 0 0 chr9 20611459 20611611 -97251016 - L1MB7 LINE L1 -1005 5141 4990 959 174 5 63 chr9 20611611 20611818 -97250809 - AluJo SINE Alu -11 301 107 1477 191 69 0 chr9 20611840 20612102 -97250525 - AluJo SINE Alu -32 280 1 447 151 11 43 chr9 20612104 20612197 -97250430 - L1MB7 LINE L1 -1155 4991 4902 710 141 13 74 chr9 20612197 20612294 -97250333 - LTR23 LTR ERV1 -43 394 308 2477 70 0 3 chr9 20612294 20612594 -97250033 - AluY SINE Alu -12 299 1 710 141 13 74 chr9 20612594 20612645 -97249982 - LTR23 LTR ERV1 -129 308 255 2344 65 7 0 chr9 20613247 20613537 -97249090 + AluSx SINE Alu 1 292 -20 21 0 0 0 chr9 20613982 20614003 -97248624 + GC_rich Low_complexity Low_complexity 1 21 0 1205 166 61 9 chr9 20614455 20614684 -97247943 + AluJb SINE Alu 9 249 -63 1459 106 79 131 chr9 20614740 20615069 -97247558 + AluJb SINE Alu 1 312 0 2514 53 0 7 chr9 20615591 20615914 -97246713 - AluSc SINE Alu 0 309 1 1790 139 17 14 chr9 20616592 20616698 -97245929 + LTR49 LTR ERV1 1 105 -490 459 0 0 0 chr9 20616698 20616749 -97245878 + (TG)n Simple_repeat Simple_repeat 1 51 0 1790 139 17 14 chr9 20616749 20616928 -97245699 + LTR49 LTR ERV1 105 287 -308 2039 152 12 12 chr9 20616928 20617264 -97245363 - MER1B DNA MER1_type -1 338 3 1077 176 126 76 chr9 20617265 20617567 -97245060 + LTR49 LTR ERV1 279 595 0 2106 136 148 84 chr9 20617762 20617868 -97244759 + MER4A LTR ERV1 1 99 -565 1903 141 16 20 chr9 20617868 20618172 -97244455 + AluJb SINE Alu 1 303 -9 2106 136 148 84 chr9 20618172 20618685 -97243942 + MER4A LTR ERV1 99 660 -4 2376 57 37 7 chr9 20618939 20619238 -97243389 - AluY SINE Alu -3 308 1 22 0 0 0 chr9 20619415 20619437 -97243190 + AT_rich Low_complexity Low_complexity 1 22 0 901 130 22 0 chr9 20619468 20619606 -97243021 - FLAM_C SINE Alu -2 141 1 1020 195 22 0 chr9 20619702 20619887 -97242740 + MER5A DNA MER1_type 1 189 0 260 196 113 62 chr9 20619924 20620021 -97242606 - MER5A DNA MER1_type -25 164 63 252 208 69 14 chr9 20619962 20620034 -97242593 + MER5A DNA MER1_type 81 156 -33 * 240 244 83 95 chr9 20620054 20620222 -97242405 - MIR SINE MIR -50 212 47 379 181 14 0 chr9 20620223 20620295 -97242332 + MIR SINE MIR 83 155 -107 1704 175 10 7 chr9 20620325 20620628 -97241999 + AluJo SINE Alu 1 304 -8 262 232 0 29 chr9 20620632 20620701 -97241926 + L1MC4 LINE L1 7976 8042 0 248 291 67 30 chr9 20620812 20620946 -97241681 + L1ME3A LINE L1 5933 6071 -99 1109 148 0 0 chr9 20621056 20621211 -97241416 + AluJb SINE Alu 135 289 -23 527 124 34 34 chr9 20621373 20621462 -97241165 - HY4 scRNA scRNA -4 89 1 1804 176 0 25 chr9 20621776 20622094 -97240533 - AluJb SINE Alu -2 310 1 187 43 0 0 chr9 20622153 20622176 -97240451 + (TTTA)n Simple_repeat Simple_repeat 2 124 0 1997 116 0 34 chr9 20622176 20622469 -97240158 - AluSx SINE Alu -1 305 1 2323 95 0 3 chr9 20622624 20622918 -97239709 - AluSx SINE Alu -15 297 5 315 310 9 44 chr9 20623039 20623152 -97239475 - L2 LINE L2 -1 3312 3204 1654 171 43 17 chr9 20623183 20623482 -97239145 - AluJo SINE Alu -5 307 1 263 349 114 0 chr9 20623975 20624124 -97238503 - MIR3 SINE MIR -21 187 22 2158 122 3 0 chr9 20624417 20624711 -97237916 - AluSx SINE Alu -12 300 6 2084 110 18 0 chr9 20624743 20625024 -97237603 - AluSx SINE Alu -26 286 1 365 298 24 40 chr9 20625565 20625689 -97236938 - L2 LINE L2 -5 3308 3187 23 0 0 0 chr9 20625700 20625723 -97236904 + AT_rich Low_complexity Low_complexity 1 23 0 976 157 7 0 chr9 20625971 20626124 -97236503 + FRAM SINE Alu 10 163 -13 2020 146 20 0 chr9 20626131 20626433 -97236194 + AluSx SINE Alu 5 312 0 1831 246 33 7 chr9 20626528 20626987 -97235640 - L1ME3A LINE L1 -9 6161 5691 498 200 0 33 chr9 20627009 20627099 -97235528 - AluJo SINE Alu -101 211 125 2417 74 0 0 chr9 20627236 20627533 -97235094 - AluY SINE Alu -14 297 1 21 0 0 0 chr9 20627540 20627561 -97235066 + AT_rich Low_complexity Low_complexity 1 21 0 941 147 0 0 chr9 20627648 20627777 -97234850 + FLAM_A SINE Alu 1 129 -4 2252 85 39 19 chr9 20628273 20628580 -97234047 - AluSq SINE Alu 0 313 1 2015 114 44 0 chr9 20628695 20628993 -97233634 - AluY SINE Alu 0 311 1 443 278 62 21 chr9 20629702 20629846 -97232781 + MER5A DNA MER1_type 22 171 -18 2214 89 13 16 chr9 20630132 20630435 -97232192 + AluSg SINE Alu 1 302 -8 2229 99 0 3 chr9 20630473 20630765 -97231862 + AluSg1 SINE Alu 1 291 -18 1980 118 14 0 chr9 20630937 20631216 -97231411 + AluSx SINE Alu 9 291 -21 1867 114 48 31 chr9 20632062 20632351 -97230276 - AluSx SINE Alu -18 294 1 295 336 23 15 chr9 20632603 20632734 -97229893 + MIR SINE MIR 72 203 -59 2128 105 0 7 chr9 20632745 20633031 -97229596 - AluSq SINE Alu -6 307 24 2206 121 3 0 chr9 20633059 20633364 -97229263 - AluSx SINE Alu -6 306 1 1043 165 0 75 chr9 20633925 20634113 -97228514 + AluSx SINE Alu 1 174 -138 1769 17 51 76 chr9 20634219 20634456 -97228171 - AluY SINE Alu -80 231 1 214 254 0 70 chr9 20634604 20634675 -97227952 - MIR3 SINE MIR -51 157 92 1777 153 17 3 chr9 20634781 20635068 -97227559 - AluJb SINE Alu -12 300 10 1417 162 15 98 chr9 20635076 20635162 -97227465 - AluJo SINE Alu -11 301 209 2159 128 0 3 chr9 20635162 20635458 -97227169 - AluSx SINE Alu -17 295 1 1417 162 15 98 chr9 20635458 20635471 -97227156 - AluJo SINE Alu -103 209 197 2312 192 72 77 chr9 20635471 20636085 -97226542 + LTR9 LTR ERV1 1 611 -1 1417 162 15 98 chr9 20636085 20636312 -97226315 - AluJo SINE Alu -115 197 1 206 242 152 30 chr9 20636317 20636416 -97226211 - MIR SINE MIR -71 191 81 256 253 55 77 chr9 20636428 20636519 -97226108 + MIR3 SINE MIR 119 207 -1 1204 184 58 143 chr9 20636791 20636898 -97225729 + MER34B LTR ERV1 1 115 -450 2017 128 0 10 chr9 20636898 20637187 -97225440 + AluJb SINE Alu 14 299 -13 1204 184 58 143 chr9 20637187 20637373 -97225254 + MER34B LTR ERV1 115 315 -250 1822 132 0 75 chr9 20637373 20637491 -97225136 + AluSx SINE Alu 1 126 -186 1973 152 0 10 chr9 20637491 20637793 -97224834 - AluJb SINE Alu -13 299 1 1822 132 0 75 chr9 20637793 20637993 -97224634 + AluSx SINE Alu 126 295 -17 1204 184 58 143 chr9 20637993 20638335 -97224292 + MER34B LTR ERV1 315 565 0 2300 86 7 0 chr9 20638639 20638931 -97223696 + AluSx SINE Alu 3 296 -16 333 322 43 47 chr9 20639315 20639526 -97223101 + L2 LINE L2 2827 3036 -236 280 243 56 75 chr9 20639533 20639640 -97222987 - L1ME LINE L1 -393 5728 5624 692 101 11 0 chr9 20639977 20640089 -97222538 + AluSg/x SINE Alu 195 307 0 520 155 0 0 chr9 20640326 20640410 -97222217 + AluS SINE Alu 221 304 -7 3064 106 2 2 chr9 20640446 20640869 -97221758 - THE1C-int LTR MaLR -1154 426 4 2100 135 61 25 chr9 20640872 20641234 -97221393 - THE1C LTR MaLR 0 375 1 266 313 88 12 chr9 20641243 20641403 -97221224 + L2 LINE L2 2148 2319 -995 1042 230 4 13 chr9 20641426 20641656 -97220971 + L1MB7 LINE L1 4013 4240 -1906 927 91 0 0 chr9 20641657 20641778 -97220849 + AluSg/x SINE Alu 172 292 -18 1315 145 29 154 chr9 20641835 20642007 -97220620 + AluJo SINE Alu 2 111 -191 2252 104 3 0 chr9 20642007 20642304 -97220323 + AluSx SINE Alu 1 298 -14 1315 145 29 154 chr9 20642304 20642475 -97220152 + AluJo SINE Alu 111 302 0 2235 118 0 3 chr9 20642487 20642793 -97219834 + AluSx SINE Alu 8 312 0 1355 213 13 3 chr9 20642793 20643093 -97219534 + L1MB7 LINE L1 4420 4722 -1424 973 180 0 0 chr9 20643102 20643263 -97219364 - AluJo/FRAM SINE Alu -15 297 137 1788 163 3 49 chr9 20643263 20643442 -97219185 - AluJo SINE Alu -2 310 124 216 0 0 0 chr9 20643442 20643466 -97219161 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1986 124 7 0 chr9 20643470 20643744 -97218883 - AluSq SINE Alu -37 276 1 1788 163 3 49 chr9 20643744 20643884 -97218743 - AluJo SINE Alu -191 121 1 1330 162 119 57 chr9 20643898 20644037 -97218590 + LTR23 LTR ERV1 1 130 -307 1389 203 37 14 chr9 20644037 20644333 -97218294 + AluJb SINE Alu 1 303 -9 854 176 8 0 chr9 20644336 20644467 -97218160 + FLAM_C SINE Alu 2 133 0 1330 162 119 57 chr9 20644467 20644596 -97218031 + LTR23 LTR ERV1 131 251 -186 2467 70 0 3 chr9 20644596 20644897 -97217730 + AluY SINE Alu 1 300 -11 1330 162 119 57 chr9 20644897 20644994 -97217633 + LTR23 LTR ERV1 251 394 -43 454 151 11 43 chr9 20644994 20645087 -97217540 + L1MB7 LINE L1 4902 4991 -1155 1436 193 68 4 chr9 20645089 20645354 -97217273 + AluJo SINE Alu 1 282 -30 935 184 5 63 chr9 20645374 20645581 -97217046 + AluJo SINE Alu 107 301 -11 624 237 0 0 chr9 20645581 20645733 -97216894 + L1MB7 LINE L1 4990 5141 -1005 834 166 0 0 chr9 20645733 20645878 -97216749 - LTR54 LTR ERV1 0 510 366 1437 135 26 22 chr9 20645922 20646151 -97216476 - LTR54 LTR ERV1 -280 230 1 568 179 9 0 chr9 20646152 20646264 -97216363 + L1MB7 LINE L1 5139 5251 -895 2720 178 26 12 chr9 20646293 20646477 -97216150 + L1MB7 LINE L1 5500 5680 -494 2082 132 0 0 chr9 20646477 20646765 -97215862 - AluSx SINE Alu -24 288 1 2720 178 26 12 chr9 20646765 20647087 -97215540 + L1MB7 LINE L1 5680 6013 -161 222 118 0 0 chr9 20647091 20647125 -97215502 + (T)n Simple_repeat Simple_repeat 1 34 0 1877 112 90 0 chr9 20647863 20648131 -97214496 - AluSc SINE Alu -17 292 1 742 183 26 0 chr9 20648132 20648285 -97214342 + L1MB7 LINE L1 6025 6181 -3 214 313 52 88 chr9 20648817 20649009 -97213618 + MIR3 SINE MIR 24 208 0 1461 150 25 83 chr9 20649455 20649606 -97213021 + AluJb SINE Alu 1 126 -186 2272 91 0 10 chr9 20649606 20649913 -97212714 + AluSq SINE Alu 1 304 -9 1461 150 25 83 chr9 20649913 20650075 -97212552 + AluJb SINE Alu 126 296 -16 195 162 0 0 chr9 20650081 20650118 -97212509 + (TG)n Simple_repeat Simple_repeat 2 38 0 293 269 0 0 chr9 20650278 20650345 -97212282 + MER5A DNA MER1_type 9 75 -114 2165 115 0 10 chr9 20650345 20650641 -97211986 + AluSx SINE Alu 1 293 -19 2361 88 7 0 chr9 20650643 20650975 -97211652 + AluY SINE Alu 1 334 0 1428 177 39 14 chr9 20651174 20651213 -97211414 - AluJb SINE Alu -22 290 253 197 0 71 0 chr9 20651213 20651241 -97211386 + (CAGTG)n Simple_repeat Simple_repeat 1 30 0 1428 177 39 14 chr9 20651241 20651484 -97211143 - AluJb SINE Alu -59 253 1 33 25 0 0 chr9 20651485 20651525 -97211102 + AT_rich Low_complexity Low_complexity 1 40 0 824 99 0 99 chr9 20651525 20651666 -97210961 - AluJb SINE Alu -185 127 1 1815 180 3 0 chr9 20651672 20651977 -97210650 - AluSx SINE Alu -6 306 1 252 0 0 0 chr9 20651996 20652024 -97210603 + (A)n Simple_repeat Simple_repeat 1 28 0 1450 174 13 68 chr9 20652027 20652118 -97210509 + AluJo SINE Alu 3 97 -215 2297 84 3 17 chr9 20652118 20652442 -97210185 + AluSc SINE Alu 1 320 0 1450 174 13 68 chr9 20652442 20652660 -97209967 + AluJo SINE Alu 97 296 -16 446 254 76 34 chr9 20652695 20652813 -97209814 + L2 LINE L2 3145 3267 -5 33 0 0 0 chr9 20653080 20653113 -97209514 + AT_rich Low_complexity Low_complexity 1 33 0 2429 71 0 0 chr9 20653113 20653407 -97209220 - AluY SINE Alu -17 294 1 1362 124 5 55 chr9 20653413 20653631 -97208996 - AluSg/x SINE Alu -17 295 89 773 197 0 8 chr9 20653645 20653772 -97208855 - FLAM_C SINE Alu -7 126 1 928 186 6 6 chr9 20653859 20654026 -97208601 - FRAM SINE Alu -18 158 1 763 172 78 0 chr9 20654411 20654539 -97208088 - FLAM_C SINE Alu -4 139 2 228 266 65 8 chr9 20654560 20654684 -97207943 - L1ME4a LINE L1 0 6121 5991 432 0 0 0 chr9 20654687 20654735 -97207892 + (CA)n Simple_repeat Simple_repeat 2 49 0 2321 99 3 0 chr9 20654982 20655286 -97207341 + AluSq SINE Alu 5 309 -4 2192 97 0 0 chr9 20656438 20656716 -97205911 - AluY SINE Alu -29 282 5 249 274 0 0 chr9 20657327 20657411 -97205216 + (TATATG)n Simple_repeat Simple_repeat 3 86 0 1639 179 0 15 chr9 20657425 20657693 -97204934 - AluJb SINE Alu -48 264 1 443 205 8 90 chr9 20657698 20657820 -97204807 - MER101 LTR ERV1 -250 224 113 1528 167 26 23 chr9 20657820 20657966 -97204661 - AluJb SINE Alu -47 265 115 2340 70 0 7 chr9 20657966 20658277 -97204350 + AluSq SINE Alu 1 309 0 1528 167 26 23 chr9 20658277 20658393 -97204234 - AluJb SINE Alu -197 115 1 25 65 0 0 chr9 20658399 20658445 -97204182 + AT_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr9 20658517 20658538 -97204089 + AT_rich Low_complexity Low_complexity 1 21 0 534 163 0 0 chr9 20658559 20658639 -97203988 - AluS SINE Alu -233 80 1 1835 106 31 100 chr9 20659780 20660101 -97202526 - AluSx SINE Alu -13 299 1 2186 109 0 7 chr9 20660446 20660748 -97201879 - AluY SINE Alu -11 300 1 1569 161 26 48 chr9 20660749 20661060 -97201567 - AluJb SINE Alu -8 304 1 2189 108 6 13 chr9 20661169 20661483 -97201144 - AluSq SINE Alu -1 312 1 2264 76 42 0 chr9 20661828 20662116 -97200511 - AluY SINE Alu -11 300 1 207 200 0 0 chr9 20662191 20662236 -97200391 + T-rich Low_complexity Low_complexity 1 45 0 180 250 227 23 chr9 20662988 20663076 -97199551 + L2 LINE L2 2855 2960 -312 2344 68 10 3 chr9 20663245 20663537 -97199090 - AluSq SINE Alu -19 294 1 2108 114 3 25 chr9 20663558 20663874 -97198753 - AluSc SINE Alu 0 309 1 420 157 108 10 chr9 20663874 20663976 -97198651 - L1M4 LINE L1 -1904 4242 4131 409 170 113 14 chr9 20663978 20664118 -97198509 - Charlie5 DNA MER1_type 0 2623 2470 661 245 19 58 chr9 20664118 20664290 -97198337 - MLT1C LTR MaLR 0 467 303 2384 100 3 0 chr9 20664290 20664600 -97198027 - AluSp SINE Alu -2 311 1 661 245 19 58 chr9 20664600 20664635 -97197992 - MLT1C LTR MaLR -164 303 268 1364 94 69 0 chr9 20664787 20664990 -97197637 - Tigger3b DNA MER2_type -741 490 274 551 165 52 0 chr9 20664988 20665085 -97197542 - Tigger3b DNA MER2_type -1129 102 1 * 1845 125 58 0 chr9 20665138 20665433 -97197194 - AluSp SINE Alu -1 312 1 1534 271 55 4 chr9 20665722 20666212 -97196415 - L1MC4a LINE L1 -1870 5938 5424 328 317 144 35 chr9 20666259 20666634 -97195993 - L1MC4a LINE L1 -813 5333 4918 1707 153 19 34 chr9 20666824 20667144 -97195483 - L1MB8 LINE L1 -2 6176 5862 1921 235 46 26 chr9 20667145 20667715 -97194912 - L1M4 LINE L1 -1026 5120 4540 322 210 145 16 chr9 20667767 20667891 -97194736 - L1M4 LINE L1 -1553 4593 4454 256 215 0 15 chr9 20668224 20668289 -97194338 + L1MC4 LINE L1 6645 6708 -1334 231 36 0 0 chr9 20668884 20668912 -97193715 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 1547 139 128 19 chr9 20668919 20669185 -97193442 - AluSg SINE Alu -15 295 1 354 194 0 0 chr9 20669187 20669254 -97193373 - AluJo/FLAM SINE Alu -175 127 61 2143 93 3 17 chr9 20669278 20669568 -97193059 - AluSc SINE Alu -19 290 5 25 0 0 0 chr9 20671009 20671034 -97191593 + AT_rich Low_complexity Low_complexity 1 25 0 2403 94 0 0 chr9 20671085 20671384 -97191243 + AluSx SINE Alu 1 299 -13 1190 250 134 67 chr9 20672525 20672960 -97189667 + L1MEd LINE L1 505 1006 -5113 2050 146 0 3 chr9 20672960 20673261 -97189366 + AluSx SINE Alu 1 300 -12 1190 250 134 67 chr9 20673261 20673528 -97189099 + L1MEd LINE L1 1006 1254 -4865 228 67 0 0 chr9 20673531 20673561 -97189066 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 1998 120 7 27 chr9 20673570 20673869 -97188758 - AluSq SINE Alu -20 293 1 2370 101 0 0 chr9 20674076 20674383 -97188244 - AluSq SINE Alu -5 308 2 241 300 14 0 chr9 20674528 20674598 -97188029 + MIR SINE MIR 191 261 -1 657 274 154 24 chr9 20675454 20675921 -97186706 - L2 LINE L2 -816 2498 1971 3576 165 6 12 chr9 20675934 20676618 -97186009 + L1MB4 LINE L1 5501 6180 0 2199 107 16 16 chr9 20676627 20676762 -97185865 + AluSg SINE Alu 1 135 -175 2460 76 3 0 chr9 20676762 20677063 -97185564 + AluY SINE Alu 1 302 -9 2199 107 16 16 chr9 20677063 20677236 -97185391 + AluSg SINE Alu 134 309 -1 341 253 146 0 chr9 20677308 20677486 -97185141 + L1ME4a LINE L1 5917 6120 -1 2102 101 32 0 chr9 20677902 20678180 -97184447 - AluSg1 SINE Alu -12 297 11 24 32 0 0 chr9 20679558 20679589 -97183038 + AT_rich Low_complexity Low_complexity 1 31 0 185 171 0 0 chr9 20680041 20680076 -97182551 - MER5C DNA MER1_type -18 306 272 306 223 116 18 chr9 20680187 20680299 -97182328 - MER5C DNA MER1_type -201 123 1 242 299 86 78 chr9 20681060 20681304 -97181323 + L2 LINE L2 2467 2712 -602 332 320 132 25 chr9 20681327 20681524 -97181103 + L2 LINE L2 2836 3053 -219 232 200 67 0 chr9 20682383 20682428 -97180199 + L2 LINE L2 2726 2773 -541 2277 99 7 0 chr9 20682438 20682730 -97179897 + AluSp SINE Alu 4 297 -16 214 200 0 25 chr9 20682748 20682788 -97179839 - L2 LINE L2 -500 2814 2776 524 263 15 30 chr9 20682857 20682990 -97179637 + L2 LINE L2 3183 3313 0 2261 93 0 7 chr9 20683192 20683481 -97179146 + AluSc SINE Alu 1 287 -22 755 289 26 64 chr9 20684184 20684576 -97178051 + L2 LINE L2 2760 3139 -174 1296 171 8 4 chr9 20684576 20684810 -97177817 - MER46A DNA MER2_type -1 235 1 755 289 26 64 chr9 20684810 20684865 -97177762 + L2 LINE L2 3139 3195 -118 907 180 87 0 chr9 20684892 20685075 -97177552 + MER58A DNA MER1_type 21 219 -5 331 348 71 0 chr9 20685082 20685194 -97177433 + L2 LINE L2 3191 3310 -3 30 45 0 0 chr9 20685380 20685424 -97177203 + AT_rich Low_complexity Low_complexity 1 44 0 602 153 0 10 chr9 20685424 20685522 -97177105 - FLAM_C SINE Alu -18 125 29 2148 126 3 0 chr9 20685727 20686021 -97176606 - AluSx SINE Alu -17 295 1 2352 62 0 42 chr9 20686079 20686386 -97176241 - AluY SINE Alu -17 294 1 22 35 0 0 chr9 20686435 20686464 -97176163 + AT_rich Low_complexity Low_complexity 1 29 0 1930 125 0 21 chr9 20688281 20688618 -97174009 - AluSx SINE Alu 0 332 2 1831 168 13 0 chr9 20688653 20688956 -97173671 + AluJb SINE Alu 3 309 -3 2425 92 0 0 chr9 20689023 20689327 -97173300 + AluSx SINE Alu 1 304 -8 28 29 0 0 chr9 20689487 20689522 -97173105 + AT_rich Low_complexity Low_complexity 1 35 0 787 273 75 20 chr9 20689630 20690229 -97172398 - L1ME LINE L1 -405 5757 5120 1183 157 105 62 chr9 20690472 20690676 -97171951 + L1MB8 LINE L1 5840 6065 -113 2274 107 3 0 chr9 20690676 20690974 -97171653 + AluSp SINE Alu 1 299 -14 1183 157 105 62 chr9 20690974 20691093 -97171534 + L1MB8 LINE L1 6065 6177 -1 526 276 103 66 chr9 20691130 20691282 -97171345 - L1ME LINE L1 -1425 4721 4576 417 170 30 0 chr9 20691282 20691382 -97171245 - L1MA7 LINE L1 -5 6286 6184 526 276 103 66 chr9 20691382 20691896 -97170731 - L1ME LINE L1 -1570 4576 4030 1064 184 5 0 chr9 20691920 20692110 -97170517 + MER58A DNA MER1_type 33 223 -1 240 211 169 134 chr9 20692140 20692225 -97170402 - L1ME LINE L1 -2154 3992 3911 415 188 73 10 chr9 20692225 20692321 -97170306 + U13 snRNA snRNA 1 102 -2 240 211 169 134 chr9 20692321 20692519 -97170108 - L1ME LINE L1 -2235 3911 3699 23 54 0 0 chr9 20692578 20692615 -97170012 + AT_rich Low_complexity Low_complexity 1 37 0 2005 133 7 20 chr9 20692658 20692960 -97169667 - AluSx SINE Alu -14 298 1 677 235 138 77 chr9 20693087 20693632 -97168995 + L1MC4 LINE L1 5272 5870 -1938 2012 151 3 0 chr9 20693632 20693937 -97168690 - AluSx SINE Alu -6 306 1 677 235 138 77 chr9 20693937 20694089 -97168538 + L1MC4 LINE L1 5870 6011 -1797 339 222 44 0 chr9 20694780 20694870 -97167757 + HsTC2 DNA Tc2 1805 1898 0 435 289 31 8 chr9 20694871 20694999 -97167628 - MIR SINE MIR -71 191 61 437 325 55 10 chr9 20695226 20695426 -97167201 - L1MEd LINE L1 -5488 631 423 265 91 23 0 chr9 20695422 20695466 -97167161 + L1PB2 LINE L1 5929 5973 -178 * 919 211 0 0 chr9 20695466 20695632 -97166995 + AluSg/x SINE Alu 131 296 -14 1324 61 0 99 chr9 20695632 20695707 -97166920 + L1PB1 LINE L1 5959 6040 -111 2008 98 0 0 chr9 20695707 20695972 -97166655 + AluY SINE Alu 1 265 -46 1324 61 0 99 chr9 20695972 20696109 -97166518 + L1PB1 LINE L1 6040 6150 -1 2365 82 20 0 chr9 20696414 20696718 -97165909 + AluSx SINE Alu 1 310 -2 325 299 222 11 chr9 20696726 20696987 -97165640 - L1MEd LINE L1 -5766 353 38 332 272 0 22 chr9 20697031 20697123 -97165504 + L1MC4 LINE L1 6614 6703 -1339 1771 87 0 0 chr9 20697241 20697459 -97165168 - AluSg/x SINE Alu -13 297 80 771 172 8 15 chr9 20698720 20698854 -97163773 - FLAM_C SINE Alu 0 133 1 352 264 157 34 chr9 20699500 20699575 -97163052 + MIR SINE MIR 36 100 -162 2286 110 0 7 chr9 20699575 20699883 -97162744 + AluSq SINE Alu 5 310 -3 352 264 157 34 chr9 20699883 20699985 -97162642 + MIR SINE MIR 100 235 -27 1851 155 49 9 chr9 20700073 20700421 -97162206 - MLT1B LTR MaLR -3 387 26 2203 107 17 0 chr9 20700421 20700710 -97161917 + AluSq SINE Alu 1 294 -19 330 278 22 0 chr9 20700719 20700809 -97161818 - L1MC4 LINE L1 -1339 6703 6612 993 147 0 0 chr9 20700827 20700997 -97161630 + (TA)n Simple_repeat Simple_repeat 1 170 0 552 203 202 49 chr9 20701575 20701737 -97160890 - MER33 DNA MER1_type -2263 361 225 2155 118 3 3 chr9 20701737 20702033 -97160594 - AluSx SINE Alu -16 296 1 552 203 202 49 chr9 20702033 20702149 -97160478 - MER33 DNA MER1_type -2399 225 1 234 159 45 0 chr9 20702149 20702193 -97160434 - L1MC5 LINE L1 -624 7337 7292 229 276 17 43 chr9 20702160 20702276 -97160351 - L1MC4 LINE L1 -547 7495 7383 * 435 315 95 82 chr9 20702549 20703013 -97159614 - L2 LINE L2 -496 2818 2349 198 0 0 0 chr9 20703013 20703035 -97159592 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 733 326 111 74 chr9 20703037 20703097 -97159530 - L2 LINE L2 -1605 1709 1653 2185 109 44 0 chr9 20703097 20703391 -97159236 + AluSx SINE Alu 1 307 -5 733 326 111 74 chr9 20703391 20704014 -97158613 - L2 LINE L2 -1661 1653 1054 1976 74 107 0 chr9 20704014 20704285 -97158342 + AluY SINE Alu 1 300 -11 733 326 111 74 chr9 20704285 20704547 -97158080 - L2 LINE L2 -2260 1054 803 859 141 0 8 chr9 20704547 20704675 -97157952 + AluJo/FLAM SINE Alu 1 127 -175 2199 114 16 0 chr9 20704677 20704983 -97157644 + AluSx SINE Alu 1 311 -1 733 326 111 74 chr9 20704983 20705340 -97157287 - L2 LINE L2 -2511 803 354 1880 129 73 15 chr9 20705406 20705746 -97156881 + MER46B DNA MER2_type 1 235 -1 1645 192 14 4 chr9 20706259 20706540 -97156087 - AluJo SINE Alu -28 284 1 23 92 0 0 chr9 20706622 20706687 -97155940 + AT_rich Low_complexity Low_complexity 1 65 0 199 135 0 39 chr9 20708256 20708308 -97154319 + (TATG)n Simple_repeat Simple_repeat 1 50 0 273 224 184 8 chr9 20708357 20708482 -97154145 - L1ME LINE L1 -260 5861 5715 260 315 70 21 chr9 20708921 20709162 -97153465 + L1ME LINE L1 5554 5806 -315 2202 111 3 0 chr9 20709856 20710145 -97152482 + AluSq SINE Alu 1 290 -23 456 128 0 0 chr9 20710146 20710224 -97152403 + (TCTA)n Simple_repeat Simple_repeat 3 80 0 2224 93 3 3 chr9 20710279 20710568 -97152059 + AluSp SINE Alu 1 289 -24 3421 195 43 4 chr9 20710568 20711305 -97151322 - L1MB8 LINE L1 -11 6167 5402 2357 106 0 3 chr9 20711847 20712149 -97150478 - AluSc SINE Alu -8 301 1 2165 115 0 20 chr9 20712279 20712575 -97150052 + AluSq SINE Alu 1 290 -23 2430 82 0 3 chr9 20713467 20713770 -97148857 + AluY SINE Alu 1 302 -9 1324 122 0 0 chr9 20713772 20713960 -97148667 + AluSg/x SINE Alu 125 312 0 868 199 0 20 chr9 20713963 20714159 -97148468 - L1MB8 LINE L1 -1063 5083 4892 641 135 0 39 chr9 20714159 20714263 -97148364 + AluJ/FLAM SINE Alu 1 100 -212 2435 89 0 0 chr9 20714265 20714578 -97148049 - AluSq SINE Alu 0 313 1 24 0 0 29 chr9 20714843 20714857 -97147770 + AT_rich Low_complexity Low_complexity 1 14 -20 1978 155 0 3 chr9 20714857 20715147 -97147480 - AluSx SINE Alu -23 289 1 24 0 0 29 chr9 20715147 20715167 -97147460 + AT_rich Low_complexity Low_complexity 14 34 0 1542 147 0 100 chr9 20715169 20715488 -97147139 + AluJb SINE Alu 1 287 -25 228 35 0 0 chr9 20715488 20715517 -97147110 + (TA)n Simple_repeat Simple_repeat 1 29 0 1136 213 55 55 chr9 20715911 20716202 -97146425 + AluJo SINE Alu 1 291 -11 22 35 0 0 chr9 20716249 20716278 -97146349 + AT_rich Low_complexity Low_complexity 1 29 0 2516 74 3 0 chr9 20716379 20716691 -97145936 - AluSp SINE Alu 0 313 1 357 277 73 109 chr9 20718317 20718758 -97143869 + L1M2 LINE L1 485 909 -5940 570 185 165 145 chr9 20719098 20719222 -97143405 + AluJo SINE Alu 23 143 -169 2117 150 0 6 chr9 20719222 20719536 -97143091 + AluSx SINE Alu 1 312 0 570 185 165 145 chr9 20719536 20719660 -97142967 + AluJo SINE Alu 143 276 -36 27 0 0 0 chr9 20719661 20719688 -97142939 + AT_rich Low_complexity Low_complexity 1 27 0 1806 161 16 10 chr9 20719688 20719992 -97142635 + AluJb SINE Alu 2 307 -5 2334 114 53 21 chr9 20719997 20720578 -97142049 + Tigger3(Golem) DNA MER2_type 2369 3028 -1 1830 152 3 7 chr9 20721200 20721490 -97141137 + AluJb SINE Alu 1 289 -23 40 21 0 0 chr9 20721496 20721543 -97141084 + AT_rich Low_complexity Low_complexity 1 47 0 2143 78 25 0 chr9 20721796 20722078 -97140549 + AluSg SINE Alu 1 289 -21 303 141 0 0 chr9 20722081 20722145 -97140482 + (CAGG)n Simple_repeat Simple_repeat 2 65 0 940 124 212 87 chr9 20722389 20722543 -97140084 - AluJo SINE Alu -16 296 163 2175 118 3 7 chr9 20722543 20722848 -97139779 - AluSq SINE Alu -9 304 1 940 124 212 87 chr9 20722848 20722934 -97139693 - AluJo SINE Alu -149 163 26 1950 81 0 0 chr9 20722937 20723171 -97139456 - AluSc SINE Alu -54 255 22 420 228 41 0 chr9 20723214 20723319 -97139308 - MER5A DNA MER1_type -77 112 6 208 288 45 0 chr9 20723545 20723611 -97139016 - L2 LINE L2 -1343 1971 1903 2092 115 34 10 chr9 20723812 20724107 -97138520 + AluSx SINE Alu 1 302 -10 204 40 0 0 chr9 20724150 20724175 -97138452 + (A)n Simple_repeat Simple_repeat 1 25 0 2487 224 91 8 chr9 20724266 20724575 -97138052 + L1M4 LINE L1 3827 4109 -2037 189 0 0 0 chr9 20724575 20724596 -97138031 + (CA)n Simple_repeat Simple_repeat 2 22 0 2487 224 91 8 chr9 20724596 20725045 -97137582 + L1M4 LINE L1 4109 4648 -1498 2127 122 0 22 chr9 20726334 20726470 -97136157 + AluSx SINE Alu 1 138 -174 1924 146 7 3 chr9 20726470 20726778 -97135849 + AluSq SINE Alu 1 309 -4 2127 122 0 22 chr9 20726778 20726960 -97135667 + AluSx SINE Alu 138 312 0 2286 90 0 3 chr9 20726963 20727253 -97135374 + AluSx SINE Alu 1 289 -23 2561 206 70 25 chr9 20727610 20727646 -97134981 - L1ME1 LINE L1 -92 6074 6041 2375 86 3 0 chr9 20727646 20727947 -97134680 + AluSp SINE Alu 1 302 -11 2561 206 70 25 chr9 20727947 20728855 -97133772 - L1ME1 LINE L1 -125 6041 5084 2209 110 0 43 chr9 20728855 20728990 -97133637 + AluSx SINE Alu 1 140 -172 2393 69 3 13 chr9 20728990 20729294 -97133333 + AluY SINE Alu 2 302 -9 2209 110 0 43 chr9 20729294 20729484 -97133143 + AluSx SINE Alu 140 312 0 2561 206 70 25 chr9 20729484 20729510 -97133117 - L1ME1 LINE L1 -1082 5084 5061 1734 117 0 0 chr9 20729616 20729847 -97132780 + AluSg/x SINE Alu 67 297 -13 1176 196 5 14 chr9 20729847 20730066 -97132561 + AluJb SINE Alu 83 299 -13 1894 196 63 7 chr9 20730068 20730497 -97132130 + L1MB5 LINE L1 5686 6138 -36 409 55 0 0 chr9 20730514 20730569 -97132058 + Alu SINE Alu 244 298 -14 236 158 0 0 chr9 20730569 20730607 -97132020 - L1MEc LINE L1 -4325 2071 2034 377 243 78 0 chr9 20730650 20730753 -97131874 + MIR SINE MIR 108 218 -44 440 200 158 91 chr9 20730881 20731000 -97131627 - MER5B DNA MER1_type -1 177 43 2374 65 3 0 chr9 20731000 20731293 -97131334 + AluY SINE Alu 1 294 -17 440 200 158 91 chr9 20731293 20731338 -97131289 - MER5B DNA MER1_type -135 43 2 269 273 61 53 chr9 20731338 20731388 -97131239 + L2 LINE L2 801 849 -2465 2379 84 0 3 chr9 20731388 20731686 -97130941 + AluSg SINE Alu 1 297 -13 269 273 61 53 chr9 20731686 20731766 -97130861 + L2 LINE L2 849 932 -2382 764 308 31 80 chr9 20731767 20732154 -97130473 + L2 LINE L2 880 1247 -2067 483 140 290 30 chr9 20732256 20732356 -97130271 - FLAM_C SINE Alu -16 127 2 207 108 0 27 chr9 20732529 20732566 -97130061 + (TTTTTA)n Simple_repeat Simple_repeat 3 38 0 2264 278 118 58 chr9 20732581 20733214 -97129413 + L2 LINE L2 1618 2212 -1101 1717 184 14 7 chr9 20733214 20733507 -97129120 - AluJo SINE Alu -17 295 1 2264 278 118 58 chr9 20733507 20734202 -97128425 + L2 LINE L2 2212 2864 -449 2300 103 0 0 chr9 20734202 20734503 -97128124 - AluSp SINE Alu -12 301 1 2264 278 118 58 chr9 20734503 20734617 -97128010 + L2 LINE L2 2864 2970 -343 2009 125 24 0 chr9 20734617 20734904 -97127723 - AluSx SINE Alu -18 294 1 2264 278 118 58 chr9 20734904 20735033 -97127594 + L2 LINE L2 2970 3274 -39 2354 99 0 10 chr9 20735065 20735369 -97127258 - AluSq SINE Alu -12 301 1 1326 195 111 0 chr9 20735509 20735771 -97126856 - AluJo SINE Alu -21 291 1 592 210 8 8 chr9 20735830 20735949 -97126678 + FLAM_C SINE Alu 1 119 -24 1707 96 5 5 chr9 20735985 20736205 -97126422 + AluSx SINE Alu 12 231 -81 534 252 0 7 chr9 20736205 20736340 -97126287 - AluSq/x SINE Alu -178 134 1 10948 89 0 2 chr9 20736340 20737852 -97124775 - THE1B-int LTR MaLR -71 1509 1 2591 94 5 27 chr9 20737852 20738224 -97124403 - THE1B LTR MaLR 0 364 1 840 208 0 31 chr9 20738246 20738405 -97124222 + FRAM SINE Alu 2 155 -11 267 31 0 0 chr9 20738525 20738557 -97124070 + (CA)n Simple_repeat Simple_repeat 2 33 0 1847 157 7 7 chr9 20738557 20738850 -97123777 - AluSx SINE Alu -19 293 1 272 214 45 0 chr9 20738931 20739020 -97123607 + Charlie8 DNA MER1_type 50 142 -2275 842 184 0 0 chr9 20739671 20739807 -97122820 + AluJo SINE Alu 1 136 -176 3018 165 103 22 chr9 20739912 20740627 -97122000 + L1MA9 LINE L1 5506 6278 -34 1816 131 0 47 chr9 20740662 20740960 -97121667 + AluSq SINE Alu 1 284 -29 1634 153 0 8 chr9 20740974 20741229 -97121398 + AluJo SINE Alu 42 294 -18 1106 222 67 3 chr9 20741451 20741766 -97120861 + L1M4 LINE L1 2397 2731 -3415 926 130 0 20 chr9 20741767 20741913 -97120714 + FLAM_C SINE Alu 1 143 0 586 236 0 31 chr9 20741913 20742074 -97120553 + L1M4 LINE L1 2722 2877 -3269 21 36 0 0 chr9 20742074 20742102 -97120525 + AT_rich Low_complexity Low_complexity 1 28 0 2229 98 6 22 chr9 20742110 20742426 -97120201 - AluSp SINE Alu -1 312 2 21 57 0 0 chr9 20742437 20742472 -97120155 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr9 20742479 20742507 -97120120 + AT_rich Low_complexity Low_complexity 1 28 0 2431 70 0 0 chr9 20742601 20742899 -97119728 + AluY SINE Alu 1 298 -13 211 276 0 0 chr9 20742926 20742984 -97119643 + A-rich Low_complexity Low_complexity 3 60 0 1191 139 0 0 chr9 20743022 20743188 -97119439 + AluSg/x SINE Alu 135 300 -10 2909 237 53 17 chr9 20743189 20743660 -97118967 + L1M4 LINE L1 2953 3405 -2741 1649 171 44 0 chr9 20743660 20743934 -97118693 + AluJb SINE Alu 1 286 -26 207 88 0 0 chr9 20743934 20743968 -97118659 + (CAAT)n Simple_repeat Simple_repeat 2 35 0 2909 237 53 17 chr9 20743968 20744453 -97118174 + L1M4 LINE L1 3404 3945 -2201 2217 102 3 0 chr9 20744473 20744766 -97117861 - AluSx SINE Alu -18 294 1 7151 146 13 108 chr9 20744770 20745305 -97117322 - L1MA3 LINE L1 -1 6304 5720 2425 77 3 3 chr9 20745305 20745616 -97117011 - AluSp SINE Alu -2 311 1 7151 146 13 108 chr9 20745616 20746183 -97116444 - L1MA3 LINE L1 -585 5720 5101 360 0 0 0 chr9 20746183 20746223 -97116404 + (TTATG)n Simple_repeat Simple_repeat 2 41 0 2023 140 3 0 chr9 20746223 20746508 -97116119 - AluSx SINE Alu -26 286 1 7151 146 13 108 chr9 20746508 20746690 -97115937 - L1MA3 LINE L1 -1203 5102 4904 310 143 0 0 chr9 20746690 20746739 -97115888 + Alu SINE Alu 250 298 -4 7151 146 13 108 chr9 20746739 20747316 -97115311 - L1MA3 LINE L1 -1401 4904 4274 1370 204 27 30 chr9 20747316 20747615 -97115012 - AluJo SINE Alu -14 298 1 7151 146 13 108 chr9 20747615 20747888 -97114739 - L1MA3 LINE L1 -2031 4274 3977 2245 113 3 3 chr9 20747888 20748199 -97114428 - AluSx SINE Alu -1 311 1 7151 146 13 108 chr9 20748199 20748260 -97114367 - L1MA3 LINE L1 -2328 3977 3912 1875 148 42 0 chr9 20748260 20748543 -97114084 - AluSx SINE Alu -17 295 1 1089 82 0 7 chr9 20748545 20748680 -97113947 - AluSq/x SINE Alu -178 134 1 7151 146 13 108 chr9 20748680 20749152 -97113475 - L1MA3 LINE L1 -2394 3911 3396 1494 129 0 10 chr9 20749152 20749395 -97113232 - AluSq SINE Alu 0 316 76 7151 146 13 108 chr9 20749395 20749469 -97113158 - L1MA3 LINE L1 -2909 3396 3720 2315 89 0 17 chr9 20749469 20749771 -97112856 - AluSq SINE Alu -16 297 1 7151 146 13 108 chr9 20749771 20750093 -97112534 - L1MA3 LINE L1 -2584 3721 3370 3140 173 43 32 chr9 20750196 20750480 -97112147 - L1 LINE L1 -2511 5054 4775 2191 116 0 23 chr9 20750480 20750781 -97111846 - AluSx SINE Alu -18 294 1 3140 173 43 32 chr9 20750781 20751192 -97111435 - L1 LINE L1 -2790 4775 4346 1662 197 3 7 chr9 20751192 20751491 -97111136 - AluJb SINE Alu -14 298 1 3140 173 43 32 chr9 20751491 20751602 -97111025 - L1 LINE L1 -3219 4346 4238 7297 45 0 7 chr9 20751602 20752671 -97109956 - L1PA5 LINE L1 0 6154 5116 3321 59 0 0 chr9 20752671 20753113 -97109514 + L1PA5 LINE L1 4661 5102 -1044 10457 148 97 26 chr9 20753113 20753713 -97108914 - L1 LINE L1 -3325 4240 3684 1688 207 0 7 chr9 20753713 20754013 -97108614 - AluJo SINE Alu -14 298 1 10457 148 97 26 chr9 20754013 20754278 -97108349 - L1 LINE L1 -3881 3684 3439 1698 194 0 0 chr9 20754278 20754572 -97108055 - AluJb SINE Alu -16 296 3 10457 148 97 26 chr9 20754572 20755326 -97107301 - L1 LINE L1 -4126 3439 2740 2256 101 13 0 chr9 20755326 20755633 -97106994 - AluSq SINE Alu -2 311 1 10457 148 97 26 chr9 20755633 20756666 -97105961 - L1 LINE L1 -4825 2740 1400 698 197 27 22 chr9 20756666 20756849 -97105778 - L1MB3 LINE L1 -323 5860 5677 1669 182 97 16 chr9 20756874 20757369 -97105258 + L1M4 LINE L1 4099 4633 -1513 1704 168 7 7 chr9 20757373 20757658 -97104969 - AluSx SINE Alu -9 303 19 2520 255 65 16 chr9 20757874 20758773 -97103854 - L1MC4 LINE L1 -413 7629 6687 1128 259 136 8 chr9 20758767 20759245 -97103382 - L1MC4a LINE L1 -1372 6436 5898 * 188 298 35 18 chr9 20759254 20759311 -97103316 - MIR3 SINE MIR -31 177 120 278 329 84 30 chr9 20759824 20759840 -97102787 - MIR3 SINE MIR -14 194 180 1916 152 10 0 chr9 20759840 20760149 -97102478 - AluJb SINE Alu 0 312 1 278 329 84 30 chr9 20760149 20760299 -97102328 - MIR3 SINE MIR -28 180 19 2210 112 0 7 chr9 20760382 20760686 -97101941 + AluSg SINE Alu 1 302 -8 22 35 0 0 chr9 20761337 20761366 -97101261 + AT_rich Low_complexity Low_complexity 1 29 0 331 136 51 0 chr9 20762830 20762889 -97099738 - MLT1A1 LTR MaLR -13 352 291 410 149 15 0 chr9 20762889 20762956 -97099671 + AluJ/FLAM SINE Alu 2 69 -243 1699 157 28 53 chr9 20763181 20763499 -97099128 - AluSx SINE Alu -2 310 1 280 151 0 82 chr9 20763502 20763575 -97099052 - AluJ/FRAM SINE Alu -7 295 229 728 148 31 0 chr9 20763609 20763737 -97098890 - FLAM_C SINE Alu 0 133 2 48 18 0 0 chr9 20763832 20763887 -97098740 + AT_rich Low_complexity Low_complexity 1 55 0 1551 168 19 23 chr9 20763892 20764154 -97098473 - AluJo SINE Alu -51 261 1 734 208 49 33 chr9 20764206 20764389 -97098238 - MER20 DNA MER1_type -6 213 28 342 167 118 78 chr9 20764399 20764501 -97098126 + MIR SINE MIR 145 250 -12 320 265 31 10 chr9 20764506 20764604 -97098023 - MIR SINE MIR -48 214 115 1769 146 7 21 chr9 20764869 20765189 -97097438 - AluSq SINE Alu 0 316 1 2249 109 16 0 chr9 20765356 20765659 -97096968 - AluSx SINE Alu -4 308 1 34 0 0 0 chr9 20766045 20766079 -97096548 + AT_rich Low_complexity Low_complexity 1 34 0 4595 130 39 32 chr9 20766079 20767001 -97095626 - L1MA8 LINE L1 -10 6281 5354 264 200 0 0 chr9 20767001 20767061 -97095566 + (TA)n Simple_repeat Simple_repeat 2 61 0 839 214 113 30 chr9 20769833 20770155 -97092472 - L1MC3 LINE L1 -6 8035 7677 2523 255 65 16 chr9 20770181 20771080 -97091547 - L1MC4 LINE L1 -413 7629 6687 1128 259 136 8 chr9 20771074 20771552 -97091075 - L1MC4a LINE L1 -1372 6436 5898 * 188 298 35 18 chr9 20771561 20771618 -97091009 - MIR3 SINE MIR -31 177 120 278 329 84 30 chr9 20772131 20772147 -97090480 - MIR3 SINE MIR -14 194 180 1916 152 10 0 chr9 20772147 20772456 -97090171 - AluJb SINE Alu 0 312 1 278 329 84 30 chr9 20772456 20772606 -97090021 - MIR3 SINE MIR -28 180 19 2383 88 0 0 chr9 20772689 20772986 -97089641 + AluSg SINE Alu 1 297 -13 1176 196 5 14 chr9 20772986 20773205 -97089422 + AluJb SINE Alu 83 299 -13 1965 197 56 24 chr9 20773207 20773675 -97088952 + L1MB5 LINE L1 5686 6168 -6 1773 168 5 32 chr9 20773679 20774053 -97088574 + L1MB8 LINE L1 5814 6177 -1 2222 127 0 0 chr9 20774064 20774371 -97088256 + AluSg SINE Alu 1 307 -3 2825 197 25 14 chr9 20774374 20775009 -97087618 + L1MC2 LINE L1 5435 6076 -268 667 170 0 0 chr9 20775009 20775109 -97087518 - AluJ/FLAM SINE Alu -212 100 2 808 144 8 0 chr9 20775155 20775273 -97087354 - FLAM_C SINE Alu -15 128 10 3023 126 65 110 chr9 20775290 20775521 -97087106 + Tigger3b DNA MER2_type 337 577 -2451 629 162 135 0 chr9 20775521 20775538 -97087089 + FLAM_A SINE Alu 1 126 -7 667 138 0 0 chr9 20775538 20775632 -97086995 + FLAM_A SINE Alu 33 126 -16 3023 126 65 110 chr9 20775632 20776066 -97086561 + Tigger3b DNA MER2_type 577 1029 -1999 1914 127 15 0 chr9 20776066 20776333 -97086294 - AluSx SINE Alu -41 271 1 2257 121 0 0 chr9 20776333 20776630 -97085997 - AluSg SINE Alu -11 299 3 3023 126 65 110 chr9 20776630 20776908 -97085719 + Tigger3b DNA MER2_type 1027 1231 0 2749 211 33 24 chr9 20776908 20777232 -97085395 + L1M4 LINE L1 2452 2771 -3375 2016 104 3 69 chr9 20777232 20777550 -97085077 + AluSx SINE Alu 1 297 -15 2749 211 33 24 chr9 20777550 20777946 -97084681 + L1M4 LINE L1 2771 3179 -2967 260 270 10 20 chr9 20777964 20778064 -97084563 + L1M4 LINE L1 3256 3354 -2792 2093 131 3 0 chr9 20778065 20778356 -97084271 + AluSq SINE Alu 1 292 -21 229 305 0 0 chr9 20778432 20778491 -97084136 + T-rich Low_complexity Low_complexity 1 59 0 1802 147 0 4 chr9 20778601 20778860 -97083767 - AluSq SINE Alu -55 258 1 506 208 0 21 chr9 20778883 20778979 -97083648 + AluJ/FLAM SINE Alu 2 95 -217 1885 159 7 3 chr9 20779156 20779451 -97083176 + AluJb SINE Alu 1 296 -16 24 0 0 0 chr9 20779452 20779476 -97083151 + AT_rich Low_complexity Low_complexity 1 24 0 245 214 146 48 chr9 20779479 20779582 -97083045 + MIR SINE MIR 42 154 -108 541 260 24 112 chr9 20779662 20779912 -97082715 + MLT1F1 LTR MaLR 1 228 -314 1089 221 19 0 chr9 20779929 20780142 -97082485 + MLT1F1 LTR MaLR 351 567 0 2333 64 10 0 chr9 20780326 20780623 -97082004 - AluY SINE Alu -11 300 1 288 181 136 136 chr9 20780699 20780876 -97081751 + L1MC5 LINE L1 7749 7925 -36 361 288 16 24 chr9 20780896 20781021 -97081606 - MIR3 SINE MIR -3 205 82 2347 105 3 3 chr9 20781780 20782093 -97080534 - AluSq SINE Alu 0 313 1 1595 186 0 42 chr9 20782446 20782758 -97079869 + AluJo SINE Alu 3 301 -11 2436 87 0 0 chr9 20782790 20783089 -97079538 + AluSc SINE Alu 1 299 -10 21 0 0 0 chr9 20783089 20783110 -97079517 + AT_rich Low_complexity Low_complexity 1 21 0 585 207 78 52 chr9 20783125 20783192 -97079435 - L1MC5 LINE L1 -62 7899 7835 2257 109 10 0 chr9 20783192 20783494 -97079133 - AluSx SINE Alu -7 305 1 585 207 78 52 chr9 20783494 20783619 -97079008 - L1MC5 LINE L1 -126 7835 7702 2243 111 7 0 chr9 20783620 20783927 -97078700 - AluSx SINE Alu -3 309 1 887 207 12 6 chr9 20783929 20784098 -97078529 - FRAM SINE Alu -9 167 1 1637 175 11 0 chr9 20784143 20784411 -97078216 - AluJb SINE Alu -41 271 1 259 182 0 0 chr9 20784422 20784466 -97078161 - L2 LINE L2 -5 3308 3265 2253 224 12 31 chr9 20784487 20784629 -97077998 - MER82 DNA MER2_type 0 653 510 2360 60 13 20 chr9 20784629 20784930 -97077697 + AluY SINE Alu 1 299 -12 2253 224 12 31 chr9 20784930 20785270 -97077357 - MER82 DNA MER2_type -143 510 180 2372 95 0 0 chr9 20785279 20785585 -97077042 - AluSg1 SINE Alu -3 306 1 294 125 0 0 chr9 20785589 20785637 -97076990 - Alu SINE Alu -3 299 252 904 161 56 0 chr9 20785637 20785780 -97076847 + AluSg/x SINE Alu 138 288 -22 1712 186 51 51 chr9 20785780 20786211 -97076416 + MLT1D LTR MaLR 75 505 0 791 234 41 0 chr9 20786450 20786621 -97076006 + MER5B DNA MER1_type 1 178 0 882 174 13 0 chr9 20786915 20787064 -97075563 + FRAM SINE Alu 8 158 -18 1653 168 58 0 chr9 20787113 20787387 -97075240 + AluJb SINE Alu 2 291 -21 2001 138 3 3 chr9 20787413 20787710 -97074917 + AluSx SINE Alu 1 297 -15 251 36 0 0 chr9 20788095 20788123 -97074504 + U6 snRNA snRNA 1 28 -79 285 238 66 15 chr9 20788384 20788472 -97074155 + MIR SINE MIR 21 117 -91 385 248 228 0 chr9 20788960 20789061 -97073566 + MIR SINE MIR 35 158 -104 2274 113 0 0 chr9 20789098 20789400 -97073227 - AluSq SINE Alu -11 302 1 387 0 0 0 chr9 20789422 20789465 -97073162 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 2201 99 0 0 chr9 20789468 20789751 -97072876 - AluSx SINE Alu -29 283 1 1118 68 0 0 chr9 20789753 20789885 -97072742 - AluSp SINE Alu -181 132 1 352 284 115 33 chr9 20789947 20790130 -97072497 - L2 LINE L2 -267 3046 2849 180 231 77 0 chr9 20790609 20790648 -97071979 - L2 LINE L2 -9 3304 3263 1039 66 22 7 chr9 20790701 20790837 -97071790 - AluSg/x SINE Alu -13 297 160 490 265 184 14 chr9 20790837 20791060 -97071567 + L2 LINE L2 3049 3309 -4 716 210 0 0 chr9 20791088 20791212 -97071415 + FLAM_A SINE Alu 9 132 -10 2331 93 3 0 chr9 20791808 20792108 -97070519 + AluSp SINE Alu 1 301 -12 2145 118 7 7 chr9 20792444 20792748 -97069879 + AluSg SINE Alu 1 304 -6 1868 109 27 51 chr9 20792750 20793064 -97069563 + AluSq SINE Alu 1 307 0 1812 90 0 4 chr9 20793088 20793322 -97069305 - AluSg1 SINE Alu -76 233 1 548 254 99 6 chr9 20793427 20793608 -97069019 - MIR SINE MIR -57 205 8 509 188 0 0 chr9 20793669 20793749 -97068878 + AluS SINE Alu 1 80 -232 24 67 0 0 chr9 20793862 20793907 -97068720 + AT_rich Low_complexity Low_complexity 1 45 0 1359 196 26 26 chr9 20793913 20794029 -97068598 + AluJb SINE Alu 1 116 -196 2339 70 0 7 chr9 20794029 20794335 -97068292 - AluSq SINE Alu 0 304 1 1359 196 26 26 chr9 20794335 20794481 -97068146 + AluJb SINE Alu 115 265 -47 421 213 8 90 chr9 20794481 20794603 -97068024 + MER101 LTR ERV1 113 224 -250 1625 183 0 15 chr9 20794608 20794876 -97067751 + AluJb SINE Alu 1 264 -48 249 274 0 0 chr9 20794890 20794974 -97067653 + (CATATA)n Simple_repeat Simple_repeat 3 86 0 2314 99 0 0 chr9 20795585 20795879 -97066748 + AluY SINE Alu 5 298 -13 1190 250 134 67 chr9 20797020 20797455 -97065172 + L1MEd LINE L1 505 1006 -5113 2033 146 0 3 chr9 20797455 20797756 -97064871 + AluSx SINE Alu 1 300 -12 1190 250 134 67 chr9 20797756 20798023 -97064604 + L1MEd LINE L1 1006 1254 -4865 228 67 0 0 chr9 20798026 20798056 -97064571 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 1992 120 7 27 chr9 20798065 20798364 -97064263 - AluSq SINE Alu -20 293 1 2371 101 0 0 chr9 20798571 20798878 -97063749 - AluSq SINE Alu -5 308 2 235 300 14 0 chr9 20799023 20799093 -97063534 + MIR SINE MIR 191 261 -1 665 274 150 21 chr9 20799949 20800417 -97062210 - L2 LINE L2 -816 2498 1971 3920 165 6 12 chr9 20800430 20801114 -97061513 + L1MB4 LINE L1 5501 6180 0 2194 107 16 16 chr9 20801123 20801258 -97061369 + AluSg SINE Alu 1 135 -175 2468 76 3 0 chr9 20801258 20801559 -97061068 + AluY SINE Alu 1 302 -9 2194 107 16 16 chr9 20801559 20801732 -97060895 + AluSg SINE Alu 134 309 -1 237 244 157 0 chr9 20801810 20801982 -97060645 + L1ME4a LINE L1 5922 6120 -1 2101 101 32 0 chr9 20802398 20802676 -97059951 - AluSg1 SINE Alu -12 297 11 1297 233 61 3 chr9 20803671 20803967 -97058660 - MLT1A1 LTR MaLR -52 313 1 397 290 75 0 chr9 20804135 20804242 -97058385 + L2 LINE L2 3158 3272 0 1764 124 39 0 chr9 20806022 20806279 -97056348 - AluSx SINE Alu -45 267 1 744 273 17 0 chr9 20806994 20807166 -97055461 - MIR SINE MIR -69 193 19 1708 156 35 0 chr9 20807659 20807947 -97054680 - AluJo SINE Alu -14 298 1 1598 166 19 4 chr9 20807987 20808252 -97054375 + AluJb SINE Alu 14 282 -30 321 242 16 102 chr9 20808329 20808457 -97054170 + L2 LINE L2 3197 3313 0 323 288 80 34 chr9 20808509 20808773 -97053854 + L1ME4a LINE L1 5677 5952 -169 314 344 37 25 chr9 20809059 20809222 -97053405 - MIR SINE MIR -77 185 21 969 104 0 15 chr9 20809777 20809911 -97052716 - FLAM_C SINE Alu -1 132 1 429 266 76 54 chr9 20810092 20810276 -97052351 + MER5A DNA MER1_type 1 188 -1 2133 111 13 10 chr9 20810376 20810683 -97051944 + AluSx SINE Alu 3 310 -2 562 244 91 10 chr9 20810697 20810894 -97051733 - L1MC4 LINE L1 -32 8010 7798 239 258 30 0 chr9 20811074 20811140 -97051487 + L3 LINE CR1 429 496 -1081 237 132 0 0 chr9 20863388 20863426 -96999201 + (TA)n Simple_repeat Simple_repeat 2 39 0 247 250 0 0 chr9 20865686 20865738 -96996889 + LTR30 LTR ERV1 1 52 -670 916 154 64 94 chr9 20865738 20866114 -96996513 + LTR12 LTR ERV1 53 285 -429 299 236 0 0 chr9 20866115 20866187 -96996440 + LTR30 LTR ERV1 553 624 -98 704 185 25 0 chr9 20866187 20866306 -96996321 + LTR12 LTR ERV1 359 480 -234 519 287 106 17 chr9 20866421 20866658 -96995969 + MIR SINE MIR 5 262 0 540 267 193 5 chr9 20866792 20866994 -96995633 + MIR SINE MIR 5 244 -18 1038 273 4 19 chr9 20867378 20867638 -96994989 + MIR SINE MIR 4 259 -3 941 237 17 17 chr9 20870451 20870687 -96991940 - MIR SINE MIR -20 242 7 231 36 0 0 chr9 20871371 20871399 -96991228 + (CA)n Simple_repeat Simple_repeat 2 29 0 2237 108 3 10 chr9 20872162 20872469 -96990158 + AluSx SINE Alu 1 305 -7 247 286 99 56 chr9 20873225 20873386 -96989241 + MIR SINE MIR 25 141 -67 180 0 0 0 chr9 20873487 20873507 -96989120 + (TC)n Simple_repeat Simple_repeat 1 20 0 315 130 0 0 chr9 20873507 20873561 -96989066 + (CA)n Simple_repeat Simple_repeat 2 55 0 2194 133 6 26 chr9 20874443 20874789 -96987838 - MER1B DNA MER1_type 0 339 1 203 354 0 0 chr9 20875175 20875271 -96987356 + GA-rich Low_complexity Low_complexity 3 98 0 440 259 144 73 chr9 20875585 20876049 -96986578 - L2 LINE L2 0 3313 2817 299 184 29 10 chr9 20876110 20876213 -96986414 + GA-rich Low_complexity Low_complexity 1 105 0 662 269 80 9 chr9 20876677 20876889 -96985738 + MIR SINE MIR 18 244 -18 209 167 83 0 chr9 20876857 20876893 -96985734 + L2 LINE L2 3217 3255 -17 * 906 215 17 130 chr9 20876975 20877070 -96985557 - MIR SINE MIR 0 262 158 785 185 0 22 chr9 20877070 20877205 -96985422 - FLAM_A SINE Alu 0 133 2 906 215 17 130 chr9 20877205 20877402 -96985225 - MIR SINE MIR -104 158 3 875 176 0 0 chr9 20877458 20877589 -96985038 + FLAM_A SINE Alu 1 131 -2 213 380 38 0 chr9 20877960 20878039 -96984588 + L3b LINE CR1 1405 1486 -97 213 154 0 0 chr9 20878370 20878409 -96984218 + (TAA)n Simple_repeat Simple_repeat 1 39 0 548 246 72 82 chr9 20878513 20878757 -96983870 + MIR SINE MIR 3 256 -6 1652 260 49 24 chr9 20879259 20879767 -96982860 + MLT1H1 LTR MaLR 27 547 -8 396 0 0 0 chr9 20880722 20880766 -96981861 + (CA)n Simple_repeat Simple_repeat 1 44 0 1057 257 15 15 chr9 20880961 20881222 -96981405 - MIR SINE MIR 0 262 2 183 257 0 0 chr9 20881325 20881360 -96981267 + MIR SINE MIR 86 120 -142 429 323 88 80 chr9 20881366 20881741 -96980886 - L2 LINE L2 -32 3240 2863 1400 160 157 3 chr9 20881776 20882070 -96980557 - MER1B DNA MER1_type 0 339 1 220 231 15 0 chr9 20882153 20882218 -96980409 + (TA)n Simple_repeat Simple_repeat 1 66 0 248 246 0 0 chr9 20882282 20882339 -96980288 - Charlie7 DNA MER1_type -2524 88 32 643 287 42 38 chr9 20882478 20882743 -96979884 - L2 LINE L2 -525 2789 2524 284 288 104 24 chr9 20882850 20882975 -96979652 - MIR SINE MIR -106 156 22 515 329 18 22 chr9 20884634 20884862 -96977765 - MIR SINE MIR -21 241 15 359 276 82 7 chr9 20887257 20887527 -96975100 + L1MC4a LINE L1 5735 6027 -94 221 106 0 21 chr9 20890022 20890069 -96972558 + (TAAA)n Simple_repeat Simple_repeat 4 49 0 2400 107 0 0 chr9 20890405 20890714 -96971913 - AluSq SINE Alu -4 309 1 1536 188 0 38 chr9 20892269 20892561 -96970066 - AluJo SINE Alu -31 281 1 251 242 55 11 chr9 20892612 20892703 -96969924 - Charlie7 DNA MER1_type -2487 125 31 1344 121 74 5 chr9 20893450 20893665 -96968962 + MER30 DNA MER1_type 1 230 0 659 243 60 32 chr9 20893759 20893944 -96968683 - MIR SINE MIR -44 218 29 338 263 7 109 chr9 20894623 20894760 -96967867 - L2 LINE L2 0 3313 3191 22 56 0 0 chr9 20895142 20895178 -96967449 + AT_rich Low_complexity Low_complexity 1 36 0 25 0 0 0 chr9 20895478 20895503 -96967124 + AT_rich Low_complexity Low_complexity 1 25 0 360 333 122 6 chr9 20895742 20895922 -96966705 + L2 LINE L2 3072 3272 0 523 235 34 0 chr9 20897075 20897194 -96965433 - L2 LINE L2 0 3313 3191 3525 211 49 12 chr9 20897353 20898246 -96964381 - L1MD2 LINE L1 -3 6356 5431 722 157 0 0 chr9 20898256 20898377 -96964250 - FLAM_C SINE Alu -3 140 20 1220 203 15 3 chr9 20898384 20898798 -96963829 - L1MD2 LINE L1 -743 5403 5022 386 236 36 18 chr9 20898884 20898994 -96963633 - MIR SINE MIR -114 148 37 2459 85 3 0 chr9 20899009 20899315 -96963312 - AluSp SINE Alu -6 307 1 232 312 58 26 chr9 20900460 20900614 -96962013 - L1MC4 LINE L1 -91 7951 7793 900 123 0 18 chr9 20900984 20901147 -96961480 + (TTTC)n Simple_repeat Simple_repeat 1 160 0 2050 132 13 19 chr9 20901150 20901461 -96961166 - AluSx SINE Alu -3 309 1 231 286 38 86 chr9 20902416 20902521 -96960106 - MIR SINE MIR -57 151 52 362 280 102 19 chr9 20902743 20902900 -96959727 - MIR SINE MIR -57 205 36 25 31 0 0 chr9 20903281 20903313 -96959314 + AT_rich Low_complexity Low_complexity 1 32 0 370 309 36 41 chr9 20903375 20903569 -96959058 + MIR SINE MIR 56 248 -14 678 199 138 53 chr9 20903968 20904214 -96958413 + MLT1H LTR MaLR 1 267 -282 929 228 89 57 chr9 20905233 20905637 -96956990 + MER96B DNA MER1_type 1 417 0 419 305 54 18 chr9 20905641 20905808 -96956819 - L2 LINE L2 -535 2779 2607 311 292 124 58 chr9 20905860 20906134 -96956493 + L2 LINE L2 2060 2351 -963 1496 99 0 0 chr9 20906245 20906437 -96956190 - AluSg/x SINE Alu -15 297 106 377 264 90 32 chr9 20906511 20906666 -96955961 + L2 LINE L2 2373 2536 -778 2570 61 0 0 chr9 20907396 20907707 -96954920 - AluY SINE Alu 0 311 1 204 40 0 0 chr9 20907711 20907736 -96954891 + (T)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr9 20907910 20907931 -96954696 + AT_rich Low_complexity Low_complexity 1 21 0 660 284 63 38 chr9 20909086 20909325 -96953302 - MIR SINE MIR -10 252 8 25 51 0 0 chr9 20909517 20909556 -96953071 + AT_rich Low_complexity Low_complexity 1 39 0 209 278 0 0 chr9 20910560 20910614 -96952013 - MIR3 SINE MIR -49 159 106 306 320 87 6 chr9 20910627 20910799 -96951828 + MIR SINE MIR 21 206 -56 495 48 0 0 chr9 20911776 20911838 -96950789 + (CA)n Simple_repeat Simple_repeat 1 62 0 347 297 36 9 chr9 20912872 20912983 -96949644 - MIR SINE MIR -86 176 63 192 40 0 0 chr9 20913729 20913754 -96948873 + (A)n Simple_repeat Simple_repeat 1 25 0 390 304 119 26 chr9 20914679 20914906 -96947721 + MIR SINE MIR 15 262 0 315 49 0 0 chr9 20915550 20915591 -96947036 + (TG)n Simple_repeat Simple_repeat 1 41 0 735 316 39 13 chr9 20915962 20916196 -96946431 - MIR SINE MIR -10 252 13 268 284 15 0 chr9 20916401 20916468 -96946159 - MIR3 SINE MIR -26 182 115 2228 177 73 25 chr9 20916986 20917466 -96945161 + MLT1D LTR MaLR 3 505 0 306 164 0 18 chr9 20917568 20917623 -96945004 - L2 LINE L2 0 3272 3219 197 222 44 0 chr9 20918124 20918169 -96944458 + L2 LINE L2 3264 3310 -3 274 311 0 0 chr9 20918422 20918496 -96944131 + L2 LINE L2 3194 3267 -5 945 209 78 21 chr9 20918657 20918992 -96943635 - L1ME1 LINE L1 -6 6160 5827 433 276 7 26 chr9 20920471 20920623 -96942004 + MER117 DNA MER1_type 12 160 -37 1248 81 29 0 chr9 20922109 20922283 -96940344 - L1PA8 LINE L1 -3 6169 5991 205 377 29 51 chr9 20922292 20922430 -96940197 + L2 LINE L2 2926 3060 -212 1107 191 34 34 chr9 20922447 20922682 -96939945 - AluJo SINE Alu -5 307 73 328 247 0 0 chr9 20923234 20923307 -96939320 - MIR SINE MIR -86 176 104 1055 265 106 47 chr9 20923326 20923707 -96938920 + LTR33 LTR ERVL 15 431 -90 1798 216 68 9 chr9 20923707 20924146 -96938481 + MLT1C LTR MaLR 3 467 0 1055 265 106 47 chr9 20924146 20924236 -96938391 + LTR33 LTR ERVL 431 514 -7 609 265 26 0 chr9 20925521 20925672 -96936955 - MIR SINE MIR -39 223 69 1100 176 83 23 chr9 20926810 20927111 -96935516 - MER33 DNA MER1_type -4 320 2 213 310 40 20 chr9 20927342 20927442 -96935185 + L2 LINE L2 2879 2980 -292 461 255 20 7 chr9 20927865 20928037 -96934590 - MIR SINE MIR -61 147 13 2023 154 33 35 chr9 20929265 20929725 -96932902 + MLT1C LTR MaLR 8 466 -1 242 331 72 24 chr9 20929928 20930179 -96932448 - L2 LINE L2 -656 2658 2396 223 308 11 55 chr9 20930292 20930347 -96932280 + MIR SINE MIR 68 119 -143 1294 153 32 130 chr9 20930347 20930686 -96931941 - AluJb SINE Alu -6 306 1 223 308 11 55 chr9 20930686 20930721 -96931906 + MIR SINE MIR 119 154 -108 1986 149 3 3 chr9 20930851 20931140 -96931487 + AluJb SINE Alu 1 289 -23 265 333 102 57 chr9 20931965 20932349 -96930278 + L2 LINE L2 2304 2704 -610 453 264 19 0 chr9 20932968 20933074 -96929553 - MIR SINE MIR -107 155 48 412 121 172 50 chr9 20933285 20933384 -96929243 - FRAM SINE Alu -18 158 48 192 329 36 73 chr9 20933534 20933671 -96928956 + L2 LINE L2 3182 3313 0 246 267 42 50 chr9 20934044 20934164 -96928463 + MER20 DNA MER1_type 86 204 -15 1929 176 65 48 chr9 20934164 20934659 -96927968 - MLT1D LTR MaLR -2 503 1 575 269 110 0 chr9 20935224 20935409 -96927218 - MIR SINE MIR -26 236 33 10759 151 45 9 chr9 20935806 20938151 -96924476 - L1PBa LINE L1 -1523 5339 3079 327 49 0 0 chr9 20938151 20938192 -96924435 + (TG)n Simple_repeat Simple_repeat 2 42 0 1976 145 0 3 chr9 20938192 20938475 -96924152 - AluSx SINE Alu -28 284 3 10759 151 45 9 chr9 20938475 20941136 -96921491 - L1PBa LINE L1 -3782 3080 1 225 265 121 0 chr9 20941148 20941231 -96921396 + MIR3 SINE MIR 2 94 -114 4928 108 1 4 chr9 20941600 20942320 -96920307 + L1PA13 LINE L1 5435 6152 -11 327 169 15 103 chr9 20942420 20942615 -96920012 + (CATATA)n Simple_repeat Simple_repeat 3 180 0 * 344 233 38 19 chr9 20942495 20942654 -96919973 + (TA)n Simple_repeat Simple_repeat 1 162 0 394 303 113 31 chr9 20942727 20942922 -96919705 + MIR SINE MIR 37 247 -15 326 252 72 9 chr9 20944021 20944132 -96918495 + MIR SINE MIR 109 226 -36 1897 169 30 0 chr9 20944157 20944566 -96918061 + MLT2B1 LTR ERVL 3 476 -39 477 62 0 0 chr9 20944566 20944631 -96917996 + (TG)n Simple_repeat Simple_repeat 2 66 0 1897 169 30 0 chr9 20944631 20944666 -96917961 + MLT2B1 LTR ERVL 476 508 -7 182 282 0 0 chr9 20944783 20944822 -96917805 - MIR SINE MIR -9 253 215 * 207 250 19 58 chr9 20944790 20944842 -96917785 - L2 LINE L2 -22 3291 3242 315 0 0 0 chr9 20945579 20945614 -96917013 + (TG)n Simple_repeat Simple_repeat 2 36 0 923 242 89 44 chr9 20945614 20946274 -96916353 + L2 LINE L2 2529 3265 -48 200 178 67 67 chr9 20947876 20947921 -96914706 - MIR SINE MIR -11 251 207 1141 224 12 0 chr9 20949519 20949774 -96912853 + L1PA15 LINE L1 4082 4339 -1807 6034 92 21 7 chr9 20949813 20951185 -96911442 + L1PA15 LINE L1 4316 5702 -463 2679 105 14 0 chr9 20951185 20951555 -96911072 + THE1C LTR MaLR 1 375 0 6034 92 21 7 chr9 20951555 20952024 -96910603 + L1PA15 LINE L1 5702 6163 -2 458 296 80 17 chr9 20952932 20953108 -96909519 + MIR SINE MIR 20 206 -56 344 288 210 10 chr9 20953756 20953961 -96908666 - MIR SINE MIR -3 259 14 1212 185 112 48 chr9 20954494 20954896 -96907731 + MLT2B1 LTR ERVL 7 475 -40 327 58 0 77 chr9 20954936 20954988 -96907639 + MLT2D LTR ERVL 367 414 0 * 646 301 59 70 chr9 20954988 20955441 -96907186 + MLT1K LTR MaLR 84 531 -57 294 50 0 0 chr9 20955646 20955686 -96906941 + (GA)n Simple_repeat Simple_repeat 1 40 0 819 196 80 20 chr9 20957371 20957570 -96905057 + L2 LINE L2 3103 3313 0 351 257 57 57 chr9 20957655 20957795 -96904832 + MIR SINE MIR 72 211 -51 186 43 0 0 chr9 20957808 20957831 -96904796 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 696 65 0 11 chr9 20957834 20957927 -96904700 - L1PA5 LINE L1 -8 6146 6055 848 38 0 0 chr9 20957927 20958032 -96904595 + L1P2 LINE L1 5653 5757 -397 25 0 0 0 chr9 20958142 20958167 -96904460 + AT_rich Low_complexity Low_complexity 1 25 0 30 0 0 0 chr9 20958509 20958539 -96904088 + AT_rich Low_complexity Low_complexity 1 30 0 220 231 19 0 chr9 20958540 20958592 -96904035 + CT-rich Low_complexity Low_complexity 3 55 0 330 329 104 24 chr9 20959457 20959621 -96903006 + HAL1 LINE L1 380 556 -1951 937 151 0 41 chr9 20959828 20960000 -96902627 + MER20 DNA MER1_type 55 219 0 236 184 57 162 chr9 20960003 20960231 -96902396 + HAL1 LINE L1 750 953 -1554 540 301 32 57 chr9 20960236 20960638 -96901989 + L1ME3A LINE L1 5552 5943 -227 2392 108 3 48 chr9 20960682 20961035 -96901592 + MER1B DNA MER1_type 1 337 0 241 136 0 0 chr9 20961378 20961422 -96901205 + HAL1 LINE L1 971 1014 -1493 22 0 0 0 chr9 20961510 20961532 -96901095 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chr9 20961557 20961590 -96901037 + AT_rich Low_complexity Low_complexity 1 33 0 1530 110 26 0 chr9 20961960 20962187 -96900440 + L1PA11 LINE L1 5942 6174 0 2049 130 25 25 chr9 20962844 20963205 -96899422 + MER46B DNA MER2_type 1 236 0 221 284 99 0 chr9 20963325 20963406 -96899221 - L2 LINE L2 0 3272 3184 299 308 48 10 chr9 20963609 20963713 -96898914 - MIR SINE MIR -60 148 41 221 330 73 9 chr9 20963720 20963829 -96898798 - L2 LINE L2 -9 3263 3148 711 214 96 39 chr9 20964177 20964532 -96898095 + L1ME4a LINE L1 5745 6119 -2 249 295 105 65 chr9 20964631 20964831 -96897796 + MIR SINE MIR 15 222 -40 274 361 39 0 chr9 20964885 20965015 -96897612 + MIR SINE MIR 54 188 -74 441 267 17 17 chr9 20966094 20966210 -96896417 + LTR16C LTR ERVL 161 276 -215 572 200 0 15 chr9 20966210 20966340 -96896287 - MLT1D LTR MaLR 0 505 378 186 333 60 43 chr9 20966710 20966827 -96895800 + MIR SINE MIR 34 152 -110 613 181 39 126 chr9 20967388 20967590 -96895037 + MER113 DNA MER1_type? 4 171 -350 459 114 23 0 chr9 20967590 20967678 -96894949 + L1MA8 LINE L1 6198 6287 -4 613 181 39 126 chr9 20967678 20967784 -96894843 + MER113 DNA MER1_type? 171 285 -236 447 328 23 0 chr9 20967959 20968087 -96894540 - MIR SINE MIR -111 151 21 267 320 173 7 chr9 20968829 20968979 -96893648 + MER5A DNA MER1_type 12 186 -3 21 0 0 0 chr9 20969526 20969547 -96893080 + AT_rich Low_complexity Low_complexity 1 21 0 5913 17 0 17 chr9 20970383 20971107 -96891520 - L1P LINE L1 -3218 2928 2216 2589 30 3 0 chr9 20971107 20971405 -96891222 - AluY SINE Alu -12 299 1 5913 17 0 17 chr9 20971405 20971430 -96891197 - L1P LINE L1 -3930 2216 2192 20269 29 7 0 chr9 20971430 20974638 -96887989 + L1PA4 LINE L1 2936 6152 -3 370 340 78 64 chr9 20974922 20975590 -96887037 - L2 LINE L2 0 3272 2595 941 260 0 4 chr9 20975808 20976035 -96886592 + Charlie1 DNA MER1_type 2 227 -2534 611 176 8 15 chr9 20976035 20976166 -96886461 + Charlie1 DNA MER1_type 2628 2757 -4 376 216 45 9 chr9 20976916 20977027 -96885600 + MER3 DNA MER1_type 79 193 -16 882 276 180 36 chr9 20977302 20977482 -96885145 + L2 LINE L2 2804 2957 -356 1127 202 28 0 chr9 20977482 20977695 -96884932 - MER20 DNA MER1_type 0 219 1 882 276 180 36 chr9 20977695 20977959 -96884668 + L2 LINE L2 2957 3312 -1 22 0 0 0 chr9 20978173 20978195 -96884432 + AT_rich Low_complexity Low_complexity 1 22 0 285 29 0 0 chr9 20979155 20979189 -96883438 + (TAAAA)n Simple_repeat Simple_repeat 1 34 0 775 259 12 8 chr9 20979371 20979618 -96883009 - L1MA9 LINE L1 -40 6272 6025 333 260 150 0 chr9 20981080 20981180 -96881447 - L2 LINE L2 -5 3308 3194 2342 100 0 0 chr9 20982702 20983002 -96879625 - AluSg SINE Alu -10 300 1 1979 135 0 55 chr9 20983012 20983338 -96879289 - AluJb SINE Alu -4 308 1 308 89 0 0 chr9 20984821 20984866 -96877761 - MADE1 DNA Mariner 0 80 36 28 48 0 0 chr9 20984928 20984970 -96877657 + AT_rich Low_complexity Low_complexity 1 42 0 405 0 0 0 chr9 20985565 20985610 -96877017 + (TG)n Simple_repeat Simple_repeat 2 46 0 21 0 0 0 chr9 20988132 20988153 -96874474 + AT_rich Low_complexity Low_complexity 1 21 0 672 219 120 11 chr9 20989807 20989990 -96872637 + MER20 DNA MER1_type 17 219 0 729 257 18 27 chr9 20992125 20992347 -96870280 + L2 LINE L2 3094 3313 0 281 139 0 0 chr9 20992830 20992873 -96869754 - tRNA-Arg-CGC tRNA tRNA -32 44 2 5410 121 34 11 chr9 20993804 20994743 -96867884 + L1MA5A LINE L1 5332 6292 -5 187 184 0 0 chr9 20994842 20994880 -96867747 + L2 LINE L2 2995 3032 -281 244 229 57 0 chr9 20994976 20995046 -96867581 + L1ME4a LINE L1 5564 5637 -484 21 57 0 0 chr9 20995081 20995116 -96867511 + AT_rich Low_complexity Low_complexity 1 35 0 392 300 126 40 chr9 20995135 20995412 -96867215 + L1ME4a LINE L1 5669 5969 -152 318 311 215 19 chr9 20995896 20996042 -96866585 + MIR SINE MIR 4 120 -142 1199 165 103 96 chr9 20996042 20996244 -96866383 + MLT1B LTR MaLR 1 209 -181 273 57 0 0 chr9 20996244 20996279 -96866348 + (TG)n Simple_repeat Simple_repeat 1 35 0 1199 165 103 96 chr9 20996279 20996463 -96866164 + MLT1B LTR MaLR 209 390 0 318 311 215 19 chr9 20996463 20996525 -96866102 + MIR SINE MIR 120 253 -9 256 188 179 36 chr9 20996674 20996786 -96865841 + MIR SINE MIR 132 259 -3 21 0 0 0 chr9 20997182 20997203 -96865424 + AT_rich Low_complexity Low_complexity 1 21 0 518 159 28 0 chr9 20997203 20997310 -96865317 - L1MA7 LINE L1 -1 6290 6181 699 259 149 4 chr9 20998514 20998769 -96863858 - L2 LINE L2 -9 3304 3013 5475 31 7 0 chr9 20998827 20999526 -96863101 - L1PA4 LINE L1 -1207 4939 4236 7349 31 11 1 chr9 20999526 21000743 -96861884 + L1PA4 LINE L1 4930 6155 0 849 270 95 33 chr9 21000745 21001284 -96861343 + L1ME3A LINE L1 1918 2481 -3734 1704 178 0 43 chr9 21001284 21001587 -96861040 + AluJo SINE Alu 1 290 -22 849 270 95 33 chr9 21001587 21001810 -96860817 + L1ME3A LINE L1 2481 2689 -3526 1244 220 67 22 chr9 21001885 21002289 -96860338 - Zaphod DNA AcHobo -15 4016 3595 * 2225 230 74 48 chr9 21002287 21003207 -96859420 - Zaphod DNA AcHobo -3041 990 47 305 245 45 39 chr9 21003211 21003366 -96859261 + L1ME3A LINE L1 4197 4352 -1863 465 215 1 1 chr9 21003368 21003477 -96859150 - L1MC/D LINE L1 -366 5804 5695 * 1739 258 75 24 chr9 21003473 21003564 -96859063 + L1ME3A LINE L1 4387 4472 -1743 2044 116 0 20 chr9 21003564 21003856 -96858771 + AluSg SINE Alu 1 286 -24 1739 258 75 24 chr9 21003856 21004691 -96857936 + L1ME3A LINE L1 4472 5361 -854 2246 243 97 13 chr9 21004694 21005393 -96857234 + L1ME3A LINE L1 5424 6181 -58 369 207 69 28 chr9 21005456 21005601 -96857026 + L1MC5 LINE L1 7785 7935 -26 660 247 85 18 chr9 21005882 21006105 -96856522 + LTR50 LTR ERVL 1 238 -557 602 240 142 13 chr9 21006140 21006452 -96856175 + LTR50 LTR ERVL 201 795 0 182 365 42 0 chr9 21007301 21007397 -96855230 - MIR SINE MIR -142 120 21 567 293 83 4 chr9 21009180 21009433 -96853194 - MER102b DNA MER1_type -4 337 65 2091 145 92 8 chr9 21009687 21010080 -96852547 + MSTB LTR MaLR 1 426 0 692 253 27 11 chr9 21010137 21010323 -96852304 + MER5A DNA MER1_type 1 189 0 218 281 32 70 chr9 21010534 21010678 -96851949 - MIR SINE MIR -95 113 16 316 176 49 29 chr9 21010690 21010792 -96851835 - L1ME4a LINE L1 -1 6120 6017 27 29 0 0 chr9 21010965 21010999 -96851628 + AT_rich Low_complexity Low_complexity 1 34 0 23 33 0 0 chr9 21011854 21011884 -96850743 + AT_rich Low_complexity Low_complexity 1 30 0 585 211 111 64 chr9 21012125 21012296 -96850331 + MIR SINE MIR 80 258 -4 580 283 61 24 chr9 21012522 21012734 -96849893 - MIR SINE MIR -20 242 23 219 103 0 0 chr9 21013402 21013441 -96849186 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 321 285 209 19 chr9 21013554 21013712 -96848915 + L3b LINE CR1 1274 1461 -122 225 49 73 49 chr9 21014148 21014189 -96848438 - MER110A LTR ERV1 -4 464 423 774 177 50 6 chr9 21014323 21014504 -96848123 + MER53 DNA DNA 1 189 0 182 243 149 65 chr9 21014842 21014949 -96847678 - L2 LINE L2 -840 2474 2359 420 327 118 66 chr9 21015006 21015884 -96846743 + L2 LINE L2 2295 3221 -51 493 279 32 37 chr9 21015894 21016084 -96846543 - MIR SINE MIR 0 262 74 342 241 43 91 chr9 21016086 21016273 -96846354 + MER5B DNA MER1_type 1 178 0 373 288 24 29 chr9 21017222 21017392 -96845235 + MIR SINE MIR 23 191 -71 192 77 0 0 chr9 21017423 21017449 -96845178 + (GA)n Simple_repeat Simple_repeat 1 26 0 743 241 6 11 chr9 21017454 21017628 -96844999 - MIR SINE MIR -56 206 34 22 0 0 0 chr9 21019373 21019395 -96843232 + AT_rich Low_complexity Low_complexity 1 22 0 431 295 116 0 chr9 21019795 21019924 -96842703 + MIR SINE MIR 8 151 -111 6968 59 13 16 chr9 21019939 21021526 -96841101 - SVA Other Other -683 1367 60 260 57 0 0 chr9 21021531 21021566 -96841061 - Alu SINE Alu -9 291 257 1237 136 6 0 chr9 21022358 21022534 -96840093 + AluSg/x SINE Alu 121 297 -13 2502 74 0 0 chr9 21022534 21022843 -96839784 + AluY SINE Alu 1 309 -2 651 183 38 23 chr9 21022852 21022983 -96839644 - FLAM_C SINE Alu 0 133 1 188 300 22 11 chr9 21022983 21023066 -96839561 + L2 LINE L2 1818 1904 -1410 398 263 22 50 chr9 21023328 21023614 -96839013 - L1MC/D LINE L1 -343 5778 5650 282 373 22 0 chr9 21024436 21024570 -96838057 + L2 LINE L2 2918 3054 -218 549 301 102 14 chr9 21024849 21025065 -96837562 + MIR SINE MIR 22 256 -6 970 201 0 0 chr9 21025552 21025716 -96836911 - FRAM SINE Alu -2 164 1 1362 95 5 26 chr9 21026111 21026300 -96836327 - AluSg/x SINE Alu -16 296 112 1014 322 65 47 chr9 21026316 21026452 -96836175 + L2 LINE L2 1656 1788 -1526 1902 132 0 31 chr9 21026452 21026741 -96835886 + AluSg SINE Alu 1 280 -30 1014 322 65 47 chr9 21026741 21027093 -96835534 + L2 LINE L2 1788 2132 -1182 1989 165 19 14 chr9 21027093 21027456 -96835171 + MLT1A1 LTR MaLR 1 365 0 1014 322 65 47 chr9 21027456 21027791 -96834836 + L2 LINE L2 2132 2495 -819 2175 116 3 13 chr9 21027803 21028114 -96834513 - AluSc SINE Alu -1 308 1 302 250 55 31 chr9 21028401 21028529 -96834098 + L2 LINE L2 3117 3247 -66 2031 99 0 61 chr9 21029604 21029781 -96832846 - AluY SINE Alu -17 294 143 2353 79 0 19 chr9 21029781 21030097 -96832530 - AluY SINE Alu 0 311 2 2031 99 0 61 chr9 21030097 21030232 -96832395 - AluY SINE Alu -168 143 1 267 273 136 11 chr9 21030311 21030399 -96832228 - L2 LINE L2 0 3272 3174 223 37 0 0 chr9 21030415 21030442 -96832185 + (TTTG)n Simple_repeat Simple_repeat 3 168 0 1783 125 7 4 chr9 21030442 21030714 -96831913 - AluSx SINE Alu -30 282 10 1232 87 34 166 chr9 21030827 21030984 -96831643 + MER30 DNA MER1_type 1 111 -119 2375 38 3 3 chr9 21030984 21031276 -96831351 - AluY SINE Alu -18 293 2 1232 87 34 166 chr9 21031276 21031383 -96831244 + MER30 DNA MER1_type 111 230 0 784 238 353 22 chr9 21032064 21033011 -96829616 - L2 LINE L2 0 3313 2038 238 263 100 12 chr9 21033628 21033708 -96828919 - MIR3 SINE MIR -39 169 83 388 230 62 0 chr9 21034319 21034432 -96828195 - L1ME2 LINE L1 -10 6154 6035 253 266 88 86 chr9 21034557 21034771 -96827856 - L1ME4a LINE L1 0 6121 5909 1582 171 0 23 chr9 21034771 21035080 -96827547 - AluJb SINE Alu -10 302 1 253 266 88 86 chr9 21035080 21035343 -96827284 - L1ME4a LINE L1 -212 5909 5643 382 343 95 44 chr9 21035348 21035622 -96827005 - L1ME4a LINE L1 -532 5589 5302 2014 107 35 0 chr9 21035625 21035915 -96826712 + AluY SINE Alu 1 300 -11 337 206 32 40 chr9 21036007 21036133 -96826494 - L1MC5 LINE L1 -65 7896 7772 312 295 60 81 chr9 21036137 21036368 -96826259 - L1ME4a LINE L1 -865 5281 5056 2189 93 0 26 chr9 21036368 21036678 -96825949 + AluSx SINE Alu 1 302 -10 312 295 60 81 chr9 21036678 21036731 -96825896 - L1ME4a LINE L1 -1090 5056 5003 302 303 81 38 chr9 21037546 21037731 -96824896 - L1M4 LINE L1 -865 5281 5089 1776 148 7 3 chr9 21039411 21039702 -96822925 - AluJb SINE Alu -20 292 1 270 0 0 0 chr9 21039954 21039984 -96822643 + (T)n Simple_repeat Simple_repeat 1 30 0 207 235 0 44 chr9 21040029 21040097 -96822530 - L2 LINE L2 -906 2408 2344 450 241 83 0 chr9 21040191 21040324 -96822303 - L1ME4a LINE L1 -13 6108 5965 2003 123 0 10 chr9 21042077 21042378 -96820249 + AluSx SINE Alu 1 298 -14 1828 168 0 0 chr9 21042562 21042866 -96819761 + AluJb SINE Alu 3 306 -6 1135 183 64 0 chr9 21043016 21043235 -96819392 + MER46A DNA MER2_type 2 234 -2 1062 206 109 29 chr9 21044626 21044937 -96817690 + MER2 DNA MER2_type 3 338 -7 825 196 0 0 chr9 21044981 21045154 -96817473 - FAM SINE Alu -4 45 1 206 343 0 0 chr9 21045629 21045699 -96816928 - MIR SINE MIR -56 206 137 337 301 0 0 chr9 21045892 21045965 -96816662 - MER2 DNA MER2_type 0 345 273 21 0 0 0 chr9 21046114 21046135 -96816492 + AT_rich Low_complexity Low_complexity 1 21 0 21 89 0 0 chr9 21048087 21048143 -96814484 + GC_rich Low_complexity Low_complexity 1 56 0 621 151 83 135 chr9 21048152 21048247 -96814380 - MER2 DNA MER2_type -113 232 150 2293 106 0 0 chr9 21048247 21048559 -96814068 + AluSx SINE Alu 1 312 0 621 151 83 135 chr9 21048559 21048655 -96813972 - MER2 DNA MER2_type -195 150 51 1495 169 51 4 chr9 21048943 21049216 -96813411 - AluJo SINE Alu -26 286 1 266 311 40 70 chr9 21049335 21049563 -96813064 + L2 LINE L2 2684 2904 -410 1118 165 55 84 chr9 21049598 21049967 -96812660 - MLT1B LTR MaLR -16 374 6 2875 91 68 127 chr9 21050522 21051082 -96811545 - MER1A DNA MER1_type 0 527 1 216 111 0 0 chr9 21051287 21051323 -96811304 + (TG)n Simple_repeat Simple_repeat 2 37 0 31 58 0 0 chr9 21051719 21051771 -96810856 + GC_rich Low_complexity Low_complexity 1 52 0 501 155 17 95 chr9 21052239 21052355 -96810272 - MER20 DNA MER1_type -112 107 1 425 215 43 134 chr9 21052648 21052857 -96809770 - MIR3 SINE MIR -14 194 5 824 185 35 4 chr9 21052914 21053091 -96809536 - MLT1F LTR MaLR -17 525 371 1816 161 0 3 chr9 21053098 21053396 -96809231 + AluJb SINE Alu 1 297 -15 468 175 12 0 chr9 21053420 21053500 -96809127 + MIR SINE MIR 108 188 -74 949 281 78 41 chr9 21053513 21053948 -96808679 + MLT1J LTR MaLR 1 451 -60 1881 117 48 7 chr9 21053953 21054244 -96808383 + AluSx SINE Alu 1 303 -9 279 213 40 27 chr9 21054292 21054367 -96808260 + MLT1J LTR MaLR 427 502 -9 209 152 109 0 chr9 21054514 21054560 -96808067 + MIR SINE MIR 19 69 -139 1652 200 3 7 chr9 21054587 21054892 -96807735 - AluJb SINE Alu -8 304 1 302 277 90 58 chr9 21055742 21055930 -96806697 - L1M4 LINE L1 -830 5316 5123 345 218 40 50 chr9 21055964 21056065 -96806562 - MIR SINE MIR -36 226 127 370 214 16 137 chr9 21056907 21057089 -96805538 + L2 LINE L2 2925 3084 -188 305 297 103 22 chr9 21057242 21057427 -96805200 + MIR SINE MIR 36 235 -27 470 268 39 16 chr9 21057537 21057664 -96804963 + L2 LINE L2 3184 3313 0 737 189 142 6 chr9 21058168 21058337 -96804290 + MER3 DNA MER1_type 1 192 -17 394 327 18 0 chr9 21059504 21059614 -96803013 + MIR SINE MIR 36 147 -61 1115 228 58 102 chr9 21059636 21059771 -96802856 + MLT2B1 LTR ERVL 2 141 -379 1878 128 25 0 chr9 21059771 21060053 -96802574 - AluSq SINE Alu -24 289 1 1751 160 0 23 chr9 21060058 21060358 -96802269 - AluJo SINE Alu -15 297 5 1115 228 58 102 chr9 21060358 21060695 -96801932 + MLT2B1 LTR ERVL 145 459 -61 914 18 9 0 chr9 21060696 21060808 -96801819 + (TTTTC)n Simple_repeat Simple_repeat 5 117 0 242 114 0 23 chr9 21060809 21060853 -96801774 + (TTCC)n Simple_repeat Simple_repeat 4 46 0 1933 111 0 14 chr9 21060857 21061136 -96801491 - AluSq SINE Alu -38 275 1 335 131 49 16 chr9 21061136 21061197 -96801430 + MLT2B1 LTR ERVL 450 512 -8 2529 176 5 0 chr9 21061795 21062204 -96800423 - MLT1C LTR MaLR -56 411 1 1018 194 0 104 chr9 21062232 21062510 -96800117 - L1MC5 LINE L1 -1088 6873 6625 1956 142 0 3 chr9 21062602 21062911 -96799716 + AluSx SINE Alu 1 308 -4 385 248 91 16 chr9 21063299 21063420 -96799207 + MIR SINE MIR 90 219 -43 1892 131 3 0 chr9 21063441 21063747 -96798880 - AluSx SINE Alu 0 312 7 468 234 9 37 chr9 21063805 21063912 -96798715 - MER5B DNA MER1_type 0 178 75 2276 83 3 0 chr9 21064300 21064601 -96798026 - AluSp SINE Alu -11 302 1 2355 124 24 8 chr9 21064682 21065061 -96797566 + L1PB3 LINE L1 5704 6088 -66 372 197 0 0 chr9 21065039 21065105 -96797522 - L1PB3 LINE L1 -61 6093 6028 * 252 0 0 0 chr9 21065182 21065210 -96797417 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 687 271 33 20 chr9 21065230 21065474 -96797153 - L1ME LINE L1 -330 5791 5545 1377 285 88 25 chr9 21065646 21065684 -96796943 - L1ME3A LINE L1 -116 6054 6020 451 243 47 0 chr9 21065684 21065791 -96796836 - MER81 DNA DNA -2 112 1 1377 285 88 25 chr9 21065791 21066482 -96796145 - L1ME3A LINE L1 -150 6020 5279 618 241 74 6 chr9 21066705 21066867 -96795760 + MER5A DNA MER1_type 17 189 0 1034 164 6 0 chr9 21067505 21067682 -96794945 - AluJo/FRAM SINE Alu -3 309 132 1624 167 0 26 chr9 21067684 21067996 -96794631 - AluJo SINE Alu -8 304 1 983 172 0 0 chr9 21069556 21069713 -96792914 - AluJb SINE Alu -19 293 137 491 261 8 8 chr9 21069719 21069836 -96792791 + MIR SINE MIR 82 198 -64 756 246 17 0 chr9 21069836 21070011 -96792616 + MER5B DNA MER1_type 1 178 0 23 0 0 0 chr9 21070051 21070074 -96792553 + AT_rich Low_complexity Low_complexity 1 23 0 270 232 71 0 chr9 21070148 21070204 -96792423 - L2 LINE L2 0 3272 3213 1505 143 189 38 chr9 21070509 21070879 -96791748 + MSTC LTR MaLR 3 428 0 1555 189 47 20 chr9 21071955 21072383 -96790244 - MLT1H LTR MaLR -3 546 1 895 282 65 3 chr9 21072596 21072890 -96789737 - L1MC4a LINE L1 -1883 5925 5614 2285 100 0 0 chr9 21072976 21073287 -96789340 - AluSq SINE Alu -2 311 1 671 193 59 0 chr9 21073294 21073413 -96789214 - FLAM_A SINE Alu -7 126 1 22 39 0 39 chr9 21073920 21073941 -96788686 + AT_rich Low_complexity Low_complexity 1 21 -28 1562 175 42 0 chr9 21073941 21074226 -96788401 + AluJb SINE Alu 3 299 -13 22 39 0 39 chr9 21074226 21074255 -96788372 + AT_rich Low_complexity Low_complexity 21 49 0 382 349 12 6 chr9 21075096 21075265 -96787362 - MER117 DNA MER1_type -24 173 4 324 0 0 0 chr9 21075470 21075506 -96787121 + (TG)n Simple_repeat Simple_repeat 1 36 0 453 226 21 0 chr9 21075679 21075772 -96786855 + MER5A DNA MER1_type 10 104 -85 1523 173 24 21 chr9 21075781 21075925 -96786702 + AluJo SINE Alu 1 143 -169 2453 116 11 26 chr9 21075925 21076306 -96786321 + THE1C LTR MaLR 1 375 0 1523 173 24 21 chr9 21076306 21076450 -96786177 + AluJo SINE Alu 143 290 -22 259 222 0 0 chr9 21076470 21076524 -96786103 + MER5A DNA MER1_type 136 189 0 228 284 25 25 chr9 21076570 21076651 -96785976 - L2 LINE L2 -19 3253 3173 1494 191 10 32 chr9 21077948 21078125 -96784502 - AluJo SINE Alu -5 307 138 1627 156 3 58 chr9 21078125 21078453 -96784174 - AluJb SINE Alu -2 310 1 1494 191 10 32 chr9 21078453 21078589 -96784038 - AluJo SINE Alu -174 138 1 340 138 231 0 chr9 21078593 21078658 -96783969 - MER3 DNA MER1_type -101 108 29 320 298 64 35 chr9 21078730 21078871 -96783756 + MIR3 SINE MIR 46 190 -18 803 211 32 0 chr9 21079217 21079373 -96783254 - MER5A DNA MER1_type 0 189 29 921 135 28 67 chr9 21081310 21081402 -96781225 - LTR32 LTR ERVL 0 471 388 2247 103 0 3 chr9 21081402 21081694 -96780933 - AluSx SINE Alu -21 291 1 921 135 28 67 chr9 21081694 21081779 -96780848 - LTR32 LTR ERVL -83 388 301 * 2103 156 24 0 chr9 21081773 21082106 -96780521 - LTR32 LTR ERVL -117 354 14 624 127 0 0 chr9 21082775 21082854 -96779773 - AluS SINE Alu -232 80 2 370 94 0 0 chr9 21082858 21082911 -96779716 + MADE1 DNA Mariner 28 80 0 306 331 46 0 chr9 21082917 21083047 -96779580 + L2 LINE L2 3137 3272 0 256 324 123 20 chr9 21084868 21085072 -96777555 - MIR SINE MIR -6 256 32 31907 101 23 58 chr9 21085920 21092282 -96770345 - L1PA7 LINE L1 -2 6152 22 403 259 98 0 chr9 21092434 21092577 -96770050 - MIR SINE MIR -3 259 103 25 75 0 0 chr9 21093165 21093218 -96769409 + AT_rich Low_complexity Low_complexity 1 53 0 2114 118 17 0 chr9 21093258 21093555 -96769072 - AluSx SINE Alu -10 302 1 304 221 23 70 chr9 21093770 21093856 -96768771 + Tigger5 DNA MER2_type 1 82 -2241 * 1461 139 34 0 chr9 21093842 21094080 -96768547 + Tigger5 DNA MER2_type 2077 2322 -1 1945 142 3 14 chr9 21095277 21095572 -96767055 + AluJo SINE Alu 1 292 -20 225 0 0 0 chr9 21097202 21097227 -96765400 + (A)n Simple_repeat Simple_repeat 1 25 0 366 258 34 0 chr9 21099887 21099976 -96762651 + L1MC4 LINE L1 6612 6703 -1339 27 49 0 0 chr9 21102442 21102483 -96760144 + AT_rich Low_complexity Low_complexity 1 41 0 190 234 21 0 chr9 21102844 21102891 -96759736 - L2 LINE L2 -2569 745 698 23 33 0 0 chr9 21103804 21103834 -96758793 + AT_rich Low_complexity Low_complexity 1 30 0 438 36 0 0 chr9 21104677 21104733 -96757894 + (CA)n Simple_repeat Simple_repeat 2 57 0 396 277 98 62 chr9 21104773 21105080 -96757547 + L1ME4a LINE L1 5591 5908 -213 2295 101 0 3 chr9 21105176 21105482 -96757145 - AluSc SINE Alu 0 309 5 229 314 38 31 chr9 21105629 21105788 -96756839 + L1ME LINE L1 5544 5703 -418 258 32 0 0 chr9 21106116 21106147 -96756480 + (TG)n Simple_repeat Simple_repeat 2 32 0 183 80 0 0 chr9 21106328 21106353 -96756274 + (TCCA)n Simple_repeat Simple_repeat 2 26 0 375 244 256 6 chr9 21106667 21106831 -96755796 + MIR SINE MIR 37 241 -21 414 290 48 60 chr9 21108365 21108587 -96754040 + MIR SINE MIR 2 222 -40 246 136 0 0 chr9 21108623 21108667 -96753960 + (T)n Simple_repeat Simple_repeat 1 44 0 1641 168 39 0 chr9 21108784 21109064 -96753563 - AluJo SINE Alu -21 291 1 262 309 79 40 chr9 21109408 21109534 -96753093 + L2 LINE L2 3183 3313 0 642 240 16 0 chr9 21109804 21109933 -96752694 + FLAM_A SINE Alu 1 131 -2 579 249 156 10 chr9 21110006 21110211 -96752416 + MIR SINE MIR 14 248 -14 2255 103 0 0 chr9 21110239 21110529 -96752098 - AluSx SINE Alu -22 290 1 198 0 0 0 chr9 21110904 21110926 -96751701 + (A)n Simple_repeat Simple_repeat 1 22 0 190 148 0 33 chr9 21111140 21111201 -96751426 + (CAAAAA)n Simple_repeat Simple_repeat 1 59 0 285 73 0 109 chr9 21112074 21112129 -96750498 - L1ME1 LINE L1 -12 6154 6106 1983 147 3 10 chr9 21112158 21112470 -96750157 - AluJb SINE Alu -2 310 1 390 175 29 87 chr9 21112484 21112587 -96750040 - L1M4 LINE L1 -642 5536 5440 4915 177 31 20 chr9 21112600 21113872 -96748755 - L1MB7 LINE L1 -10 6174 4893 515 259 95 13 chr9 21113992 21114150 -96748477 + MIR SINE MIR 3 173 -89 2202 113 3 10 chr9 21116518 21116819 -96745808 - AluSx SINE Alu -13 299 1 180 0 0 0 chr9 21116845 21116865 -96745762 + (T)n Simple_repeat Simple_repeat 1 20 0 216 227 0 0 chr9 21118395 21118439 -96744188 - L2 LINE L2 -8 3305 3262 645 250 112 18 chr9 21118488 21118712 -96743915 + MIR SINE MIR 16 260 -2 1091 213 139 32 chr9 21118720 21118845 -96743782 + MER2 DNA MER2_type 2 112 -232 1892 133 6 41 chr9 21118845 21119162 -96743465 - AluSp SINE Alu -7 306 1 1091 213 139 32 chr9 21119162 21119346 -96743281 + MER2 DNA MER2_type 112 344 0 290 317 77 0 chr9 21119396 21119500 -96743127 + MIR SINE MIR 22 133 -129 * 293 247 65 0 chr9 21119484 21119561 -96743066 + L2 LINE L2 3232 3313 0 1377 219 38 19 chr9 21120124 21120582 -96742045 + MLT1H LTR MaLR 1 549 0 324 304 94 7 chr9 21120807 21120945 -96741682 - MIR3 SINE MIR -9 199 50 236 233 17 33 chr9 21120977 21121037 -96741590 + MIR SINE MIR 36 94 -114 7560 87 21 3 chr9 21121129 21122916 -96739711 - L1PA7 LINE L1 -3 6466 4660 23 33 0 0 chr9 21122937 21122967 -96739660 + AT_rich Low_complexity Low_complexity 1 30 0 44005 32 21 1 chr9 21122967 21128997 -96733630 - L1PA2 LINE L1 0 6155 3 22567 119 38 20 chr9 21128999 21132395 -96730232 - L1PA7 LINE L1 -1785 4676 1131 2225 114 3 0 chr9 21132395 21132703 -96729924 - AluY SINE Alu -2 309 1 22567 119 38 20 chr9 21132703 21133855 -96728772 - L1PA7 LINE L1 -5330 1131 1 294 96 19 39 chr9 21133889 21133941 -96728686 + L2 LINE L2 3262 3312 -1 200 59 29 0 chr9 21134591 21134625 -96728002 + (GA)n Simple_repeat Simple_repeat 2 36 0 235 253 107 0 chr9 21135109 21135184 -96727443 + MIR SINE MIR 47 129 -133 2603 221 13 63 chr9 21136041 21136662 -96725965 + MLT1G LTR MaLR 1 590 0 340 164 0 0 chr9 21136740 21136807 -96725820 - L1MA4 LINE L1 -5 6295 6229 1792 135 53 3 chr9 21137613 21137916 -96724711 - L1MA4A LINE L1 0 6303 5986 187 278 189 0 chr9 21140381 21140471 -96722156 + MIR3 SINE MIR 4 110 -98 1492 129 27 99 chr9 21140725 21141059 -96721568 + MLT1B LTR MaLR 21 330 -60 1393 135 5 0 chr9 21141081 21141288 -96721339 - MER2 DNA MER2_type -135 210 3 799 268 158 17 chr9 21141289 21141644 -96720983 + MLT1J LTR MaLR 35 439 -72 316 231 26 0 chr9 21141934 21142012 -96720615 + MLT1J LTR MaLR 429 508 -3 2108 116 21 0 chr9 21142433 21142718 -96719909 + AluSq SINE Alu 5 295 -18 265 246 224 22 chr9 21143767 21143901 -96718726 - MIR3 SINE MIR -15 193 33 1765 204 165 9 chr9 21144055 21144492 -96718135 + LTR22 LTR ERVK 1 505 -4 1653 144 65 38 chr9 21144577 21144869 -96717758 - AluJb SINE Alu -12 300 1 283 260 27 0 chr9 21145817 21145890 -96716737 + MIR SINE MIR 170 244 -18 1029 206 37 124 chr9 21147040 21147464 -96715163 + MLT1B LTR MaLR 1 390 0 180 0 0 0 chr9 21147664 21147684 -96714943 + (TA)n Simple_repeat Simple_repeat 1 20 0 * 291 28 0 0 chr9 21147683 21147719 -96714908 + (GA)n Simple_repeat Simple_repeat 2 37 0 1978 123 0 14 chr9 21147719 21147996 -96714631 - AluSx SINE Alu -39 273 1 2198 89 17 7 chr9 21148203 21148496 -96714131 - AluSg SINE Alu -14 296 1 1575 199 3 7 chr9 21149599 21149890 -96712737 + AluJo SINE Alu 11 300 -12 495 118 0 0 chr9 21150562 21150638 -96711989 + (TCCC)n Simple_repeat Simple_repeat 4 79 0 1606 163 11 21 chr9 21150641 21150924 -96711703 - AluJb SINE Alu -32 280 1 204 167 0 0 chr9 21151283 21151331 -96711296 + (TCTA)n Simple_repeat Simple_repeat 3 50 0 11592 36 8 0 chr9 21151789 21153883 -96708744 + L1PA5 LINE L1 4050 6149 -5 2560 53 3 0 chr9 21154031 21154331 -96708296 + AluY SINE Alu 1 301 -10 23 54 0 0 chr9 21154439 21154476 -96708151 + AT_rich Low_complexity Low_complexity 1 37 0 869 250 102 0 chr9 21155247 21155463 -96707164 - MIR SINE MIR 0 262 25 452 232 72 14 chr9 21155693 21155831 -96706796 - L1MC4a LINE L1 -1850 5958 5813 1045 198 50 5 chr9 21155873 21156075 -96706552 - MER58C DNA MER1_type -1 214 4 180 308 77 11 chr9 21156149 21156240 -96706387 + L2 LINE L2 2688 2784 -530 511 315 152 32 chr9 21156268 21156925 -96705702 + L2 LINE L2 2538 3271 -1 262 330 91 35 chr9 21156966 21157163 -96705464 + L2 LINE L2 2840 3047 -225 488 271 0 45 chr9 21157425 21157558 -96705069 - MIR SINE MIR -43 219 93 183 313 73 73 chr9 21158276 21158297 -96704330 - MER5A DNA MER1_type -1 188 168 570 228 144 18 chr9 21158297 21158464 -96704163 + MER5A DNA MER1_type 2 189 0 183 313 73 73 chr9 21158464 21158592 -96704035 - MER5A DNA MER1_type -20 169 39 553 252 38 97 chr9 21158640 21158756 -96703871 + MIR SINE MIR 37 158 -104 2124 82 58 24 chr9 21158756 21159049 -96703578 + AluSx SINE Alu 3 305 -7 553 252 38 97 chr9 21159049 21159104 -96703523 + MIR SINE MIR 158 193 -69 1941 149 174 14 chr9 21159104 21159472 -96703155 + MSTA LTR MaLR 1 427 -1 553 252 38 97 chr9 21159472 21159537 -96703090 + MIR SINE MIR 193 260 -2 402 333 38 21 chr9 21159713 21159899 -96702728 - MER5A DNA MER1_type 0 189 1 405 0 0 0 chr9 21160252 21160297 -96702330 + (CA)n Simple_repeat Simple_repeat 2 46 0 231 36 0 0 chr9 21160296 21160324 -96702303 + (GA)n Simple_repeat Simple_repeat 2 29 0 * 284 328 25 8 chr9 21160759 21160878 -96701749 + MIR3 SINE MIR 51 171 -37 510 194 7 211 chr9 21161128 21161417 -96701210 + MIR SINE MIR 7 236 -26 342 289 54 13 chr9 21162668 21162817 -96699810 - L1ME4a LINE L1 -3 6118 5964 497 92 5 0 chr9 21164240 21164308 -96698319 + Tigger4(Zombi) DNA MER2_type 268 2731 0 2999 134 6 27 chr9 21164493 21164587 -96698040 + L1PB1 LINE L1 5686 5780 -371 217 68 45 0 chr9 21164587 21164631 -96697996 + (TA)n Simple_repeat Simple_repeat 1 46 0 2999 134 6 27 chr9 21164631 21165012 -96697615 + L1PB1 LINE L1 5780 6151 0 216 271 0 75 chr9 21165921 21166028 -96696599 + GA-rich Low_complexity Low_complexity 2 100 0 387 312 0 44 chr9 21167436 21167602 -96695025 + MIR3 SINE MIR 11 170 -38 267 383 19 0 chr9 21168197 21168351 -96694276 + MIR SINE MIR 96 252 -10 1159 244 101 40 chr9 21169546 21170296 -96692331 + L2 LINE L2 2449 3256 -57 294 129 0 0 chr9 21171040 21171102 -96691525 + (A)n Simple_repeat Simple_repeat 1 62 0 242 319 33 33 chr9 21171102 21171193 -96691434 - L2 LINE L2 -48 3224 3134 602 25 25 0 chr9 21171393 21171472 -96691155 - L1HS LINE L1 -2 6153 6073 27 49 0 0 chr9 21171472 21171513 -96691114 + AT_rich Low_complexity Low_complexity 1 41 0 1914 235 60 5 chr9 21171920 21172441 -96690186 - L1MC4a LINE L1 -721 7087 6604 199 189 0 38 chr9 21173928 21173981 -96688646 + L2 LINE L2 3261 3311 -2 255 61 0 0 chr9 21174928 21174961 -96687666 + (T)n Simple_repeat Simple_repeat 1 33 0 2148 120 0 0 chr9 21175445 21175737 -96686890 + AluSx SINE Alu 1 292 -20 1070 273 23 48 chr9 21175748 21176140 -96686487 + L1MC4a LINE L1 5517 5898 -1910 367 243 75 9 chr9 21176691 21176798 -96685829 - L3 LINE CR1 -126 1451 1338 685 274 162 76 chr9 21177086 21177714 -96684913 + L2 LINE L2 290 971 -2343 1153 233 114 18 chr9 21177714 21178101 -96684526 + L2 LINE L2 1982 2405 -909 1300 237 68 70 chr9 21178140 21178643 -96683984 + MLT1J LTR MaLR 7 508 -3 738 53 0 0 chr9 21179233 21179328 -96683299 + (CCTA)n Simple_repeat Simple_repeat 4 98 0 200 300 114 0 chr9 21179742 21179812 -96682815 + L2 LINE L2 3192 3269 -3 339 315 165 15 chr9 21179917 21180117 -96682510 + L2 LINE L2 3043 3272 0 302 328 16 16 chr9 21180514 21180636 -96681991 + MIR SINE MIR 20 141 -121 249 397 41 26 chr9 21180941 21181135 -96681492 + L2 LINE L2 3073 3269 -3 204 67 0 0 chr9 21181244 21181274 -96681353 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 413 214 101 75 chr9 21181868 21182027 -96680600 - MER103 DNA DNA -1 165 3 22 0 0 0 chr9 21183156 21183178 -96679449 + AT_rich Low_complexity Low_complexity 1 22 0 839 245 0 5 chr9 21233430 21233626 -96629001 + Charlie1 DNA MER1_type 33 227 -2534 651 185 7 15 chr9 21233626 21233761 -96628866 + Charlie1 DNA MER1_type 2628 2761 0 414 244 41 8 chr9 21234507 21234630 -96627997 + MER3 DNA MER1_type 79 205 -4 880 276 180 36 chr9 21234893 21235073 -96627554 + L2 LINE L2 2804 2957 -356 1128 202 28 0 chr9 21235073 21235286 -96627341 - MER20 DNA MER1_type 0 219 1 880 276 180 36 chr9 21235286 21235550 -96627077 + L2 LINE L2 2957 3312 -1 22 0 0 0 chr9 21235764 21235786 -96626841 + AT_rich Low_complexity Low_complexity 1 22 0 285 29 0 0 chr9 21236746 21236780 -96625847 + (TAAAA)n Simple_repeat Simple_repeat 1 34 0 842 259 12 8 chr9 21236962 21237209 -96625418 - L1MA9 LINE L1 -40 6272 6025 328 260 150 0 chr9 21238671 21238771 -96623856 - L2 LINE L2 -5 3308 3194 2329 100 0 0 chr9 21240293 21240593 -96622034 - AluSg SINE Alu -10 300 1 1973 141 0 34 chr9 21240603 21240923 -96621704 - AluJb SINE Alu -3 309 1 322 89 0 0 chr9 21242406 21242451 -96620176 - MADE1 DNA Mariner 0 80 36 28 48 0 0 chr9 21242513 21242555 -96620072 + AT_rich Low_complexity Low_complexity 1 42 0 405 0 0 0 chr9 21243151 21243196 -96619431 + (TG)n Simple_repeat Simple_repeat 2 46 0 21 0 0 0 chr9 21245717 21245738 -96616889 + AT_rich Low_complexity Low_complexity 1 21 0 710 224 120 11 chr9 21247392 21247575 -96615052 + MER20 DNA MER1_type 17 219 0 719 257 18 27 chr9 21249710 21249932 -96612695 + L2 LINE L2 3094 3313 0 297 139 0 0 chr9 21250415 21250458 -96612169 - tRNA-Arg-CGC tRNA tRNA -32 44 2 5729 120 34 11 chr9 21251389 21252328 -96610299 + L1MA5A LINE L1 5332 6292 -5 183 184 0 0 chr9 21252427 21252465 -96610162 + L2 LINE L2 2995 3032 -281 262 238 68 0 chr9 21252561 21252643 -96609984 + L1ME LINE L1 5564 5637 -484 21 57 0 0 chr9 21252666 21252701 -96609926 + AT_rich Low_complexity Low_complexity 1 35 0 246 279 124 53 chr9 21252720 21252946 -96609681 + L1ME LINE L1 5669 5910 -211 328 311 215 19 chr9 21253480 21253626 -96609001 + MIR SINE MIR 4 120 -142 1315 173 108 54 chr9 21253626 21253809 -96608818 + MLT1B LTR MaLR 1 173 -217 216 0 0 0 chr9 21253809 21253833 -96608794 + (TC)n Simple_repeat Simple_repeat 1 24 0 309 51 0 0 chr9 21253834 21253873 -96608754 + (TG)n Simple_repeat Simple_repeat 1 39 0 1315 173 108 54 chr9 21253873 21254057 -96608570 + MLT1B LTR MaLR 172 390 0 328 311 215 19 chr9 21254057 21254119 -96608508 + MIR SINE MIR 120 253 -9 254 188 179 36 chr9 21254268 21254380 -96608247 + MIR SINE MIR 132 259 -3 21 0 0 0 chr9 21254775 21254796 -96607831 + AT_rich Low_complexity Low_complexity 1 21 0 529 159 28 0 chr9 21254796 21254903 -96607724 - L1MA7 LINE L1 -1 6290 6181 707 267 149 4 chr9 21256106 21256361 -96606266 - L2 LINE L2 -9 3304 3013 5730 31 7 0 chr9 21256419 21257119 -96605508 - L1PA4 LINE L1 -1207 4939 4235 7359 30 11 1 chr9 21257119 21258336 -96604291 + L1PA4 LINE L1 4930 6155 0 932 266 96 34 chr9 21258338 21258877 -96603750 + L1ME2 LINE L1 1918 2481 -3734 1661 178 0 43 chr9 21258877 21259180 -96603447 + AluJo SINE Alu 1 290 -22 932 266 96 34 chr9 21259180 21259403 -96603224 + L1ME2 LINE L1 2481 2689 -3526 1351 220 67 22 chr9 21259478 21259882 -96602745 - Zaphod DNA AcHobo -15 4016 3595 * 2457 231 74 48 chr9 21259880 21260800 -96601827 - Zaphod DNA AcHobo -3041 990 47 1807 238 65 97 chr9 21260804 21261157 -96601470 + L1ME2 LINE L1 4197 4560 -1655 2045 119 0 0 chr9 21261157 21261434 -96601193 + AluSg SINE Alu 1 277 -33 1807 238 65 97 chr9 21261434 21262284 -96600343 + L1ME2 LINE L1 4560 5361 -854 2415 233 91 39 chr9 21262287 21263034 -96599593 + L1ME2 LINE L1 5424 6224 -9 411 207 69 28 chr9 21263050 21263195 -96599432 + L1MC5 LINE L1 7785 7935 -26 746 239 225 28 chr9 21263476 21263836 -96598791 + LTR50 LTR ERVL 1 431 -364 673 210 169 0 chr9 21263827 21264046 -96598581 + LTR50 LTR ERVL 540 795 0 * 645 293 83 4 chr9 21266774 21267027 -96595600 - MER102a DNA MER1_type -4 326 54 2083 145 92 8 chr9 21267281 21267674 -96594953 + MSTB LTR MaLR 1 426 0 698 253 27 11 chr9 21267731 21267917 -96594710 + MER5A DNA MER1_type 1 189 0 220 281 32 70 chr9 21268128 21268272 -96594355 - MIR SINE MIR -95 113 16 343 176 49 29 chr9 21268284 21268386 -96594241 - L1ME4a LINE L1 -1 6120 6017 27 29 0 0 chr9 21268559 21268593 -96594034 + AT_rich Low_complexity Low_complexity 1 34 0 23 33 0 0 chr9 21269448 21269478 -96593149 + AT_rich Low_complexity Low_complexity 1 30 0 588 211 111 64 chr9 21269719 21269890 -96592737 + MIR SINE MIR 80 258 -4 574 283 61 24 chr9 21270116 21270328 -96592299 - MIR SINE MIR -20 242 23 219 103 0 0 chr9 21270996 21271035 -96591592 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 315 285 209 19 chr9 21271148 21271306 -96591321 + L3b LINE CR1 1274 1461 -122 240 49 73 49 chr9 21271742 21271783 -96590844 - MER110A LTR ERV1 -4 464 423 789 177 50 6 chr9 21271917 21272098 -96590529 + MER53 DNA DNA 1 189 0 182 243 149 65 chr9 21272436 21272543 -96590084 - L2 LINE L2 -840 2474 2359 392 323 115 71 chr9 21272600 21273478 -96589149 + L2 LINE L2 2295 3214 -58 491 279 32 37 chr9 21273488 21273678 -96588949 - MIR SINE MIR 0 262 74 352 235 37 96 chr9 21273682 21273869 -96588758 + MER5B DNA MER1_type 3 178 0 379 282 24 29 chr9 21274818 21274988 -96587639 + MIR SINE MIR 23 191 -71 739 241 6 11 chr9 21275046 21275220 -96587407 - MIR SINE MIR -56 206 34 235 254 60 15 chr9 21276841 21276908 -96585719 + LTR67 LTR ERVL 125 194 -363 22 0 0 0 chr9 21276965 21276987 -96585640 + AT_rich Low_complexity Low_complexity 1 22 0 286 293 85 27 chr9 21277144 21277332 -96585295 + LTR67 LTR ERVL 359 557 0 585 282 206 0 chr9 21277387 21277596 -96585031 + MIR SINE MIR 8 259 -3 611 178 7 44 chr9 21278796 21278931 -96583696 - MLT1E3 LTR MaLR 0 624 495 843 182 18 18 chr9 21279223 21279393 -96583234 - FRAM SINE Alu -6 170 1 2661 142 25 14 chr9 21280007 21280445 -96582182 + MSTB2 LTR MaLR 15 457 0 485 280 42 0 chr9 21281977 21282095 -96580532 - L2 LINE L2 -2 3311 3189 790 260 100 11 chr9 21282406 21282687 -96579940 + L2 LINE L2 1387 1692 -1622 3171 76 5 5 chr9 21282688 21283121 -96579506 - L1PA7 LINE L1 -1 6153 5721 1906 100 4 0 chr9 21283121 21283392 -96579235 + L1PA5 LINE L1 5881 6152 -2 28476 102 13 50 chr9 21283404 21283778 -96578849 - L1P3 LINE L1 -423 5731 5345 251 28 28 0 chr9 21283778 21283814 -96578813 + (TTTTA)n Simple_repeat Simple_repeat 4 40 0 5120 40 3 2 chr9 21283814 21284433 -96578194 - L1PA4 LINE L1 -13 6142 5523 28476 102 13 50 chr9 21284433 21290079 -96572548 - L1P3 LINE L1 -807 5347 10 2526 144 67 2 chr9 21290133 21290535 -96572092 - MSTC LTR MaLR 0 428 1 3879 161 76 5 chr9 21293041 21293951 -96568676 + L1MB7 LINE L1 5204 6184 0 488 262 14 7 chr9 21294834 21294975 -96567652 - MIR SINE MIR -48 214 73 327 237 132 9 chr9 21295538 21295652 -96566975 - MIR3 SINE MIR -4 204 77 701 317 5 20 chr9 21296301 21296500 -96566127 - MER91A DNA MER1_type 0 196 1 347 274 70 43 chr9 21296545 21296775 -96565852 - MER112 DNA MER1_type -24 236 1 283 329 60 13 chr9 21296874 21297023 -96565604 + MIR SINE MIR 23 178 -84 189 0 0 0 chr9 21297648 21297669 -96564958 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 229 257 294 5 chr9 21297992 21298206 -96564421 + L1ME4a LINE L1 5591 5866 -255 306 274 42 71 chr9 21298325 21298493 -96564134 + L1ME4a LINE L1 5935 6097 -24 1101 246 111 73 chr9 21299024 21299832 -96562795 + L1MEd LINE L1 418 1256 -4949 560 334 73 14 chr9 21299834 21300178 -96562449 + L1MEd LINE L1 1329 1692 -4704 2198 73 3 22 chr9 21300388 21300702 -96561925 + AluY SINE Alu 4 311 0 2285 99 0 3 chr9 21300871 21301174 -96561453 - AluSg SINE Alu -8 302 1 299 264 84 30 chr9 21301363 21301399 -96561228 + L1MEd LINE L1 2059 2092 -4123 2170 58 47 0 chr9 21301399 21301675 -96560952 + AluY SINE Alu 14 302 -9 299 264 84 30 chr9 21301675 21301968 -96560659 + L1MEd LINE L1 2092 2360 -3855 261 368 0 0 chr9 21302091 21302178 -96560449 + GA-rich Low_complexity Low_complexity 2 88 0 484 296 30 18 chr9 21303486 21303655 -96558972 - MIR SINE MIR -7 255 85 721 211 46 0 chr9 21307892 21308044 -96554583 + MIR SINE MIR 79 237 -25 21 0 0 0 chr9 21308503 21308524 -96554103 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr9 21309692 21309721 -96552906 + GC_rich Low_complexity Low_complexity 1 29 0 582 182 8 16 chr9 21310879 21311000 -96551627 - FLAM_A SINE Alu -5 137 18 729 154 62 20 chr9 21311017 21311212 -96551415 - L1MC5 LINE L1 -30 7931 7729 745 176 16 132 chr9 21311213 21311532 -96551095 + L1MC5 LINE L1 6815 7096 -865 225 203 0 0 chr9 21311637 21311696 -96550931 - L1M4 LINE L1 -1072 5074 5016 541 277 97 76 chr9 21311837 21312260 -96550367 - MLT1J LTR MaLR -58 453 22 2029 99 13 56 chr9 21313198 21313500 -96549127 + AluSq SINE Alu 5 293 -20 274 283 168 9 chr9 21313780 21313893 -96548734 + L2 LINE L2 3141 3271 -1 1126 281 76 13 chr9 21313929 21314310 -96548317 - MLT1I LTR MaLR -4 405 1 421 174 248 0 chr9 21314406 21314515 -96548112 - MIR SINE MIR -106 156 21 1584 115 91 35 chr9 21315104 21315391 -96547236 + L1PA15 LINE L1 5863 6165 0 21 0 0 0 chr9 21315656 21315677 -96546950 + AT_rich Low_complexity Low_complexity 1 21 0 187 179 0 89 chr9 21316256 21316312 -96546315 - L3 LINE CR1 -206 1371 1321 352 265 52 80 chr9 21316353 21316612 -96546015 - HAL1 LINE L1 -140 2367 2117 3807 20 9 2 chr9 21316612 21317062 -96545565 + L1PA4 LINE L1 5703 6155 0 352 265 52 80 chr9 21317062 21317126 -96545501 - HAL1 LINE L1 -390 2117 2053 2177 259 74 72 chr9 21317215 21318703 -96543924 - HAL1 LINE L1 -698 1809 319 505 185 50 17 chr9 21318715 21318834 -96543793 - MLT1E2 LTR MaLR -2 624 502 369 250 109 0 chr9 21319234 21319362 -96543265 - HAL1b LINE L1 -690 658 517 261 0 0 0 chr9 21319380 21319409 -96543218 + (CA)n Simple_repeat Simple_repeat 1 29 0 456 294 153 64 chr9 21319409 21319848 -96542779 - HAL1b LINE L1 -867 481 4 1076 219 100 9 chr9 21320610 21320930 -96541697 - MLT1C LTR MaLR -2 465 117 239 291 110 0 chr9 21321447 21321574 -96541053 - L1ME LINE L1 -302 5819 5679 6337 65 0 0 chr9 21321818 21322598 -96540029 - LTR17 LTR ERV1 0 780 1 2036 184 11 8 chr9 21323578 21323942 -96538685 + MLT1A1 LTR MaLR 1 365 0 24 0 0 0 chr9 21324296 21324320 -96538307 + AT_rich Low_complexity Low_complexity 1 24 0 283 167 39 0 chr9 21324647 21324725 -96537902 - L1MB7 LINE L1 -4 6180 6100 2642 216 47 54 chr9 21324836 21325730 -96536897 - L1M4 LINE L1 -1425 4721 3834 566 355 59 17 chr9 21325979 21326269 -96536358 - L3 LINE CR1 -826 751 450 374 276 95 0 chr9 21326300 21326405 -96536222 + L2 LINE L2 3199 3313 0 192 273 0 18 chr9 21326446 21326501 -96536126 - L3 LINE CR1 -1194 383 330 419 243 95 14 chr9 21326563 21326711 -96535916 - MER69A DNA AcHobo -7 170 11 25 0 0 0 chr9 21326887 21326912 -96535715 + AT_rich Low_complexity Low_complexity 1 25 0 198 269 129 86 chr9 21326990 21327083 -96535544 + MIR3 SINE MIR 6 102 -106 2103 171 79 46 chr9 21327088 21327645 -96534982 - LTR24B LTR ERV1 -17 593 1 210 340 53 11 chr9 21327646 21327740 -96534887 + MIR3 SINE MIR 96 193 -15 3645 109 71 12 chr9 21330205 21330783 -96531844 + LTR9 LTR ERV1 1 612 0 28 61 0 0 chr9 21331648 21331697 -96530930 + AT_rich Low_complexity Low_complexity 1 49 0 1356 177 105 15 chr9 21331809 21332143 -96530484 + MLT1A1 LTR MaLR 2 365 0 396 240 101 16 chr9 21332199 21332328 -96530299 - L1ME LINE L1 -4129 2132 1993 352 204 37 75 chr9 21332328 21332408 -96530219 - AluS SINE Alu -248 60 1 701 306 24 0 chr9 21332637 21332928 -96529699 - L1ME LINE L1 -4604 1657 1360 350 276 71 47 chr9 21332991 21333343 -96529284 - L1ME LINE L1 -4905 1165 802 2015 149 17 3 chr9 21334099 21334400 -96528227 - AluSx SINE Alu -7 305 1 2063 153 14 14 chr9 21334428 21334793 -96527834 + MLT1A1 LTR MaLR 1 365 0 344 296 74 40 chr9 21334919 21335095 -96527532 - MLT1J LTR MaLR -327 184 3 198 0 0 0 chr9 21336740 21336762 -96525865 + (T)n Simple_repeat Simple_repeat 1 22 0 652 310 132 4 chr9 21336970 21337212 -96525415 - MLT1J2 LTR MaLR -108 342 70 2820 130 12 0 chr9 21337293 21337716 -96524911 - MSTA LTR MaLR 0 428 1 195 259 56 0 chr9 21337742 21337796 -96524831 + L2 LINE L2 3257 3313 0 37 86 0 0 chr9 21338241 21338334 -96524293 + AT_rich Low_complexity Low_complexity 1 93 0 1556 158 13 76 chr9 21338506 21338822 -96523805 - AluJo SINE Alu -10 302 7 5807 161 13 12 chr9 21339188 21340774 -96521853 + L1PB1 LINE L1 4195 5794 -357 663 78 0 0 chr9 21340774 21340864 -96521763 + (TA)n Simple_repeat Simple_repeat 1 90 0 5807 161 13 12 chr9 21340864 21341222 -96521405 + L1PB1 LINE L1 5794 6150 -1 26 0 0 0 chr9 21341222 21341248 -96521379 + AT_rich Low_complexity Low_complexity 1 26 0 391 100 0 0 chr9 21341248 21341308 -96521319 + L1PB1 LINE L1 6090 6149 -2 194 0 39 0 chr9 21341316 21341342 -96521285 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 273 169 0 0 chr9 21341461 21341520 -96521107 + (TG)n Simple_repeat Simple_repeat 2 60 0 359 286 36 24 chr9 21343712 21343880 -96518747 + LTR16B LTR ERVL 289 458 -6 838 186 158 24 chr9 21343983 21344078 -96518549 - L1MC4 LINE L1 0 8042 7961 279 0 0 0 chr9 21344078 21344109 -96518518 + (TG)n Simple_repeat Simple_repeat 2 32 0 838 186 158 24 chr9 21344109 21344260 -96518367 - L1MC4 LINE L1 -81 7961 7763 1111 128 0 0 chr9 21344262 21344441 -96518186 + AluSc SINE Alu 134 312 0 7095 62 7 0 chr9 21344478 21345966 -96516661 + L1PA8 LINE L1 4667 6159 -13 241 182 162 20 chr9 21345967 21346066 -96516561 - L1MC4 LINE L1 -265 7777 7665 187 163 0 102 chr9 21346102 21346151 -96516476 - L2 LINE L2 -8 3305 3262 22 0 0 0 chr9 21346586 21346608 -96516019 + AT_rich Low_complexity Low_complexity 1 22 0 1313 210 10 86 chr9 21347213 21347608 -96515019 - MLT1A1 LTR MaLR 0 365 1 27 29 0 0 chr9 21348268 21348302 -96514325 + AT_rich Low_complexity Low_complexity 1 34 0 267 196 0 0 chr9 21348311 21348367 -96514260 + HsTC2 DNA Tc2 1 56 -1842 1238 165 11 36 chr9 21348941 21349236 -96513391 + L1MA4 LINE L1 6030 6305 0 272 306 12 0 chr9 21350135 21350220 -96512407 + MIR SINE MIR 165 250 -12 279 0 0 0 chr9 21350446 21350477 -96512150 + (CA)n Simple_repeat Simple_repeat 2 32 0 515 280 13 25 chr9 21350996 21351153 -96511474 - MIR SINE MIR -30 232 78 1496 172 7 123 chr9 21351445 21351858 -96510769 - MLT1A1 LTR MaLR 0 365 1 4278 33 5 1 chr9 21353109 21353758 -96508869 + L1P2 LINE L1 4874 5526 -629 * 41734 42 1 52 chr9 21353732 21357806 -96504821 + L1P2 LINE L1 7 4289 -1866 2928 13 0 0 chr9 21357806 21358124 -96504503 + AluYb8 SINE Alu 1 318 0 41734 42 1 52 chr9 21358124 21359090 -96503537 + L1P2 LINE L1 4289 5303 -852 288 0 0 0 chr9 21359090 21359122 -96503505 + (CA)n Simple_repeat Simple_repeat 1 32 0 1205 128 0 6 chr9 21359123 21359295 -96503332 + AluSg/x SINE Alu 133 303 -9 41734 42 1 52 chr9 21359295 21359975 -96502652 + L1P2 LINE L1 5302 5590 -565 1412 203 87 6 chr9 21360376 21360697 -96501930 + MER7A DNA MER2_type 2 346 0 1528 201 117 17 chr9 21361264 21361667 -96500960 - L1ME2 LINE L1 -9 6155 5713 1141 279 120 3 chr9 21361730 21362096 -96500531 - L2 LINE L2 -3 3310 2902 708 199 44 16 chr9 21362176 21362351 -96500276 + LTR41 LTR ERVL 3 181 -614 3692 289 26 3 chr9 21362351 21363368 -96499259 + ERVL LTR ERVL 3972 5012 -752 1978 120 0 37 chr9 21363854 21364154 -96498473 + AluSq SINE Alu 1 289 -24 5770 117 11 7 chr9 21364160 21366139 -96496488 - L1PA16 LINE L1 -9 6860 4867 3716 230 25 9 chr9 21366141 21367332 -96495295 - L1PA16 LINE L1 -2908 3941 2733 1754 164 17 7 chr9 21367380 21367667 -96494960 + AluJb SINE Alu 1 290 -22 301 336 107 15 chr9 21368971 21369102 -96493525 + MIR SINE MIR 49 191 -71 189 220 153 59 chr9 21369553 21369671 -96492956 - L2 LINE L2 -17 3296 3168 21 36 0 0 chr9 21370001 21370029 -96492598 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr9 21370781 21370805 -96491822 + AT_rich Low_complexity Low_complexity 1 24 0 1891 216 70 17 chr9 21371086 21371568 -96491059 - L1MB8 LINE L1 0 6178 5671 717 73 0 0 chr9 21371568 21371664 -96490963 + (TA)n Simple_repeat Simple_repeat 2 97 0 2029 135 14 3 chr9 21371664 21371960 -96490667 - AluSq SINE Alu -14 299 1 25194 156 16 14 chr9 21371981 21377580 -96485047 - L1PA10 LINE L1 -15 6468 818 1568 235 64 43 chr9 21377664 21378103 -96484524 - MLT1D LTR MaLR -57 448 1 1357 205 35 55 chr9 21378103 21378538 -96484089 - L1PA15 LINE L1 -1599 5045 4620 5524 135 8 4 chr9 21378538 21380151 -96482476 + L1PA15 LINE L1 5039 6660 -3 20698 148 25 14 chr9 21380154 21387261 -96475366 + L1MA2 LINE L1 15 7339 -384 1744 44 5 0 chr9 21387261 21387466 -96475161 - AluY SINE Alu -1 310 105 20698 148 25 14 chr9 21387466 21387856 -96474771 + L1MA2 LINE L1 7339 7723 0 2912 238 64 50 chr9 21387896 21388263 -96474364 - L1MEc LINE L1 -2576 4068 3708 2271 97 0 3 chr9 21388263 21388573 -96474054 + AluSc SINE Alu 1 309 0 2912 238 64 50 chr9 21388573 21389620 -96473007 - L1MEc LINE L1 -2936 3708 2631 1801 179 3 0 chr9 21389620 21389916 -96472711 - AluJo SINE Alu -15 297 1 2912 238 64 50 chr9 21389916 21389941 -96472686 - L1MEc LINE L1 -4013 2631 2608 290 251 21 7 chr9 21389960 21390093 -96472534 - L1MDa LINE L1 -4711 1829 1688 637 293 78 25 chr9 21390165 21390650 -96471977 - L1MEc LINE L1 -4271 2554 2044 4473 158 46 6 chr9 21390657 21391756 -96470871 - L1MB7 LINE L1 -21 6163 5016 602 255 81 23 chr9 21391751 21392010 -96470617 - L1MEc LINE L1 -4737 1909 1636 * 425 231 0 40 chr9 21392055 21392228 -96470399 - L1MEc LINE L1 -5083 1459 1294 264 147 40 27 chr9 21393847 21393922 -96468705 + CT-rich Low_complexity Low_complexity 4 79 0 729 100 16 68 chr9 21393923 21394113 -96468514 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 207 200 27 27 chr9 21394113 21394188 -96468439 + CT-rich Low_complexity Low_complexity 4 78 0 1652 116 0 0 chr9 21394626 21394851 -96467776 - AluSg/x SINE Alu 0 312 88 189 0 0 0 chr9 21395555 21395576 -96467051 + (A)n Simple_repeat Simple_repeat 1 21 0 261 339 43 25 chr9 21395942 21396337 -96466290 - Charlie4 DNA MER1_type -1126 835 434 360 64 0 0 chr9 21396924 21396971 -96465656 + (TG)n Simple_repeat Simple_repeat 1 47 0 2178 116 151 5 chr9 21399116 21399488 -96463139 + MSTA LTR MaLR 3 428 0 826 284 168 11 chr9 21401153 21401505 -96461122 - L2 LINE L2 -683 2631 2225 781 253 76 4 chr9 21401512 21401737 -96460890 + MIR SINE MIR 4 244 -18 838 314 95 6 chr9 21401764 21402102 -96460525 - L2 LINE L2 -1093 2221 1854 621 293 105 23 chr9 21402511 21402948 -96459679 - L1ME4a LINE L1 -232 5889 5417 274 179 15 172 chr9 21404117 21404195 -96458432 + MIR3 SINE MIR 82 132 -76 2080 71 0 0 chr9 21404195 21404450 -96458177 - AluY SINE Alu -18 293 39 274 179 15 172 chr9 21404450 21404505 -96458122 + MIR3 SINE MIR 132 194 -14 303 183 146 0 chr9 21404586 21404668 -96457959 + L2 LINE L2 2128 2221 -1093 2289 137 8 3 chr9 21405230 21405594 -96457033 + MER47A DNA MER2_type 1 366 0 295 182 91 45 chr9 21406085 21406173 -96456454 - MIR SINE MIR -75 187 96 3858 202 16 56 chr9 21406219 21407075 -96455552 - L1PA13 LINE L1 -5 6158 5337 5865 75 12 0 chr9 21407075 21407875 -96454752 + L1PA10 LINE L1 5344 6153 -15 977 155 21 0 chr9 21407875 21408062 -96454565 - L1PA14 LINE L1 -791 5355 5165 * 2255 120 67 4 chr9 21408061 21408799 -96453828 + L1PA14 LINE L1 5335 6146 -5 909 248 126 39 chr9 21409496 21409932 -96452695 - MLT2F LTR ERVL -189 474 1 180 0 0 0 chr9 21410039 21410059 -96452568 + (TTA)n Simple_repeat Simple_repeat 3 22 0 957 337 140 14 chr9 21410237 21410866 -96451761 + L2 LINE L2 476 1183 -2131 485 254 26 62 chr9 21410866 21411059 -96451568 - MLT1F LTR MaLR -356 186 1 632 280 156 21 chr9 21411059 21411341 -96451286 + L2 LINE L2 1888 2207 -1107 733 120 10 0 chr9 21411370 21411470 -96451157 - FLAM_A SINE Alu -32 110 10 1081 305 110 19 chr9 21411471 21412009 -96450618 + L2 LINE L2 2199 2785 -529 994 159 137 13 chr9 21412038 21412265 -96450362 - MSTB LTR MaLR -4 428 174 1024 160 0 0 chr9 21412272 21412422 -96450205 + FRAM SINE Alu 5 154 -22 1008 151 11 27 chr9 21412439 21412625 -96450002 - MSTB LTR MaLR -241 185 3 764 351 20 44 chr9 21412682 21413177 -96449450 + L2 LINE L2 2824 3306 -7 370 202 39 48 chr9 21413411 21413515 -96449112 - MIR SINE MIR -123 139 37 379 245 31 75 chr9 21414210 21414369 -96448258 - MIR SINE MIR -27 235 84 340 161 69 35 chr9 21414375 21414462 -96448165 - MLT1J LTR MaLR -1 510 421 1015 270 60 3 chr9 21414506 21414825 -96447802 - MLT1J LTR MaLR -166 345 9 227 310 0 0 chr9 21415191 21415249 -96447378 + L2 LINE L2 3215 3272 0 252 86 0 0 chr9 21416195 21416230 -96446397 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 682 265 0 41 chr9 21417190 21417386 -96445241 - MIR SINE MIR -65 197 10 403 300 38 25 chr9 21417391 21417551 -96445076 + MIR SINE MIR 63 224 -38 24 0 0 0 chr9 21418157 21418181 -96444446 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr9 21418272 21418307 -96444320 + AT_rich Low_complexity Low_complexity 1 35 0 431 257 88 58 chr9 21418334 21418548 -96444079 - MIR SINE MIR -44 218 5 656 305 43 30 chr9 21418619 21418947 -96443680 - MLT2E LTR ERVL 0 628 297 2561 72 0 0 chr9 21419129 21419436 -96443191 + AluY SINE Alu 1 307 -4 692 363 67 3 chr9 21419513 21419902 -96442725 - LTR67 LTR ERVL -35 522 109 2453 91 40 43 chr9 21420287 21420662 -96441965 - THE1C LTR MaLR -1 374 1 328 302 0 19 chr9 21420948 21421054 -96441573 - LTR67 LTR ERVL -452 105 2 483 347 32 18 chr9 21421143 21421362 -96441265 + MIR SINE MIR 29 250 -12 249 345 117 81 chr9 21421766 21422008 -96440619 - L2 LINE L2 -11 3261 3004 4605 133 22 82 chr9 21422008 21422990 -96439637 - MER49 LTR ERV1 0 923 1 249 345 117 81 chr9 21422990 21423054 -96439573 - L2 LINE L2 -268 3004 2944 1273 204 39 74 chr9 21423819 21424182 -96438445 - MLT1A2 LTR MaLR -24 350 1 502 178 50 0 chr9 21424782 21424883 -96437744 + MER5A DNA MER1_type 7 112 -77 2064 90 66 17 chr9 21426075 21426363 -96436264 - AluSp SINE Alu -11 302 1 896 254 87 52 chr9 21426397 21426547 -96436080 - MER34 LTR ERV1 -5 537 394 23479 29 10 0 chr9 21426547 21430159 -96432468 + L1PA4 LINE L1 2540 6155 0 896 254 87 52 chr9 21430159 21430524 -96432103 - MER34 LTR ERV1 -148 394 4 427 311 8 16 chr9 21430648 21430770 -96431857 - L2 LINE L2 -4 3309 3189 347 311 192 42 chr9 21430839 21431292 -96431335 + L2 LINE L2 2379 2899 -415 207 69 0 0 chr9 21431556 21431585 -96431042 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 4934 31 0 0 chr9 21431588 21432165 -96430462 - L1PA3 LINE L1 -3 6152 5576 23 33 0 0 chr9 21432669 21432699 -96429928 + AT_rich Low_complexity Low_complexity 1 30 0 298 194 28 28 chr9 21432872 21432944 -96429683 - MIR3 SINE MIR -17 191 120 643 316 62 21 chr9 21433267 21433603 -96429024 - L3 LINE CR1 -853 724 375 186 327 193 0 chr9 21433641 21433864 -96428763 + L2 LINE L2 1978 2243 -1071 243 394 10 0 chr9 21434364 21434463 -96428164 - L2 LINE L2 -25 3247 3148 318 336 71 77 chr9 21434574 21435107 -96427520 + L2 LINE L2 2324 2853 -461 215 337 90 0 chr9 21435170 21435259 -96427368 + L2 LINE L2 2940 3036 -236 241 310 103 7 chr9 21435381 21435526 -96427101 - MIR SINE MIR -66 196 38 27 49 0 0 chr9 21435580 21435621 -96427006 + AT_rich Low_complexity Low_complexity 1 41 0 3952 180 55 19 chr9 21435647 21437032 -96425595 - L1MB7 LINE L1 -51 6133 4695 745 275 55 29 chr9 21437169 21437613 -96425014 - L1ME4a LINE L1 -116 6005 5549 198 0 0 0 chr9 21437650 21437672 -96424955 + (T)n Simple_repeat Simple_repeat 1 22 0 327 251 86 17 chr9 21438029 21438204 -96424423 - L1MB7 LINE L1 -1459 4687 4501 781 335 52 57 chr9 21438391 21438809 -96423818 - L1MB7 LINE L1 -1867 4279 3865 279 0 0 0 chr9 21438809 21438840 -96423787 + (TG)n Simple_repeat Simple_repeat 2 32 0 781 335 52 57 chr9 21438840 21439119 -96423508 - L1MB7 LINE L1 -2281 3865 3586 2356 116 27 16 chr9 21440257 21440628 -96421999 - THE1C LTR MaLR 0 375 1 832 205 164 8 chr9 21441076 21441339 -96421288 - LTR16C LTR ERVL 0 491 188 850 231 77 5 chr9 21441518 21441726 -96420901 + MIR SINE MIR 13 235 -27 2299 64 24 13 chr9 21441914 21442212 -96420415 + AluY SINE Alu 1 301 -10 360 158 118 0 chr9 21443454 21443530 -96419097 + ORSL DNA AcHobo 187 271 -4 400 229 32 10 chr9 21443906 21444089 -96418538 - MLT1G1 LTR MaLR -411 179 3 1932 122 39 0 chr9 21444130 21444409 -96418218 - AluSq SINE Alu -1 312 23 183 129 0 0 chr9 21446967 21446998 -96415629 + (A)n Simple_repeat Simple_repeat 1 31 0 312 239 314 6 chr9 21447696 21447855 -96414772 + MIR SINE MIR 33 240 -22 189 0 0 0 chr9 21448255 21448276 -96414351 + (CAAAC)n Simple_repeat Simple_repeat 4 24 0 399 289 8 16 chr9 21448788 21448909 -96413718 + MIR SINE MIR 16 135 -127 318 333 26 0 chr9 21449033 21449147 -96413480 - MIR SINE MIR -40 222 106 221 293 43 115 chr9 21449158 21449366 -96413261 + L2 LINE L2 2688 2880 -434 6183 134 94 4 chr9 21449793 21450923 -96411704 + Tigger3b DNA MER2_type 1 1231 0 355 328 23 15 chr9 21451144 21451275 -96411352 - MIR3 SINE MIR -52 156 25 492 241 18 0 chr9 21451871 21451983 -96410644 - MER81 DNA DNA 0 114 1 207 140 53 18 chr9 21452127 21452184 -96410443 + T-rich Low_complexity Low_complexity 2 60 0 300 282 88 30 chr9 21452768 21452918 -96409709 - MIR3 SINE MIR -105 157 2 251 299 0 0 chr9 21452995 21453062 -96409565 - MER115 DNA AcHobo -1 692 626 330 235 0 0 chr9 21453167 21453235 -96409392 - MER115 DNA AcHobo -159 534 467 326 23 0 23 chr9 21453691 21453735 -96408892 + (TTCA)n Simple_repeat Simple_repeat 4 46 0 2845 163 24 16 chr9 21453787 21454364 -96408263 + L1MB7 LINE L1 5584 6165 -19 271 0 51 0 chr9 21455252 21455291 -96407336 + (TTTTA)n Simple_repeat Simple_repeat 5 45 0 266 232 16 200 chr9 21455366 21455556 -96407071 + MER5A DNA MER1_type 35 189 0 1719 158 4 0 chr9 21456514 21456779 -96405848 - AluJb SINE Alu -27 285 20 256 267 9 9 chr9 21456968 21457073 -96405554 + HAL1 LINE L1 2245 2349 -158 246 296 28 9 chr9 21458794 21458902 -96403725 - L1ME LINE L1 -268 5853 5744 215 79 26 0 chr9 21459549 21459587 -96403040 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3481 137 7 7 chr9 21459866 21460451 -96402176 - MER7C DNA MER2_type -16 586 2 233 352 50 19 chr9 21460645 21460804 -96401823 - MIR SINE MIR -42 220 57 320 364 52 7 chr9 21461053 21461207 -96401420 + MIR3 SINE MIR 45 205 -3 315 0 0 0 chr9 21462207 21462242 -96400385 + (TG)n Simple_repeat Simple_repeat 1 35 0 240 35 0 0 chr9 21462241 21462270 -96400357 + (GA)n Simple_repeat Simple_repeat 1 29 0 * 551 254 0 0 chr9 21462975 21463089 -96399538 - MIR SINE MIR -102 160 47 26 0 0 0 chr9 21463842 21463868 -96398759 + AT_rich Low_complexity Low_complexity 1 26 0 267 288 63 36 chr9 21464473 21464584 -96398043 - L2 LINE L2 -1 3312 3199 1079 130 22 0 chr9 21464641 21464826 -96397801 + L1PA16 LINE L1 5873 6061 -105 614 120 0 51 chr9 21464988 21465105 -96397522 + L1PA16 LINE L1 6056 6166 0 228 283 0 0 chr9 21465944 21465990 -96396637 + G-rich Low_complexity Low_complexity 4 49 0 351 231 238 7 chr9 21466234 21466381 -96396246 - MIR SINE MIR -24 238 58 852 79 14 14 chr9 21467998 21468138 -96394489 + (GGAA)n Simple_repeat Simple_repeat 1 140 0 2400 93 0 3 chr9 21468159 21468502 -96394125 + AluY SINE Alu 1 342 0 2298 29 43 0 chr9 21469226 21469503 -96393124 + AluY SINE Alu 1 289 -22 1995 101 0 0 chr9 21469605 21469862 -96392765 - AluSq SINE Alu -56 257 1 805 246 113 57 chr9 21470053 21470460 -96392167 + MLT1J LTR MaLR 1 430 -81 321 189 189 0 chr9 21470488 21470562 -96392065 + MER5A DNA MER1_type 14 101 -88 915 219 15 5 chr9 21470629 21470825 -96391802 + MIR SINE MIR 9 206 -56 539 248 16 16 chr9 21471155 21471284 -96391343 - L2 LINE L2 0 3313 3185 333 0 0 0 chr9 21471795 21471832 -96390795 + (TG)n Simple_repeat Simple_repeat 2 38 0 4411 221 104 50 chr9 21471847 21473821 -96388806 - L1M4 LINE L1 -919 5227 3148 1827 224 103 8 chr9 21474087 21474619 -96388008 - MER119 DNA MER1_type 0 583 1 530 266 0 28 chr9 21475633 21475810 -96386817 + MER104 DNA Tc2 6 177 -3 1849 158 33 22 chr9 21476920 21477025 -96385602 + MLT1A1 LTR MaLR 1 103 -262 2399 103 36 20 chr9 21477025 21477383 -96385244 - THE1B LTR MaLR 0 364 1 1849 158 33 22 chr9 21477383 21477638 -96384989 + MLT1A1 LTR MaLR 103 365 0 401 290 68 31 chr9 21479112 21479274 -96383353 + MIR SINE MIR 22 189 -73 284 315 0 0 chr9 21480100 21480173 -96382454 + L2 LINE L2 3199 3271 -1 366 309 83 28 chr9 21480322 21480503 -96382124 - MIR SINE MIR 0 262 72 207 69 0 0 chr9 21480744 21480773 -96381854 + (CA)n Simple_repeat Simple_repeat 2 30 0 396 213 37 19 chr9 21480777 21480885 -96381742 + MER112 DNA MER1_type 68 177 -83 321 219 48 19 chr9 21480901 21481006 -96381621 + MER112 DNA MER1_type 148 255 -5 375 260 58 0 chr9 21481082 21481186 -96381441 + MIR SINE MIR 82 191 -71 888 201 29 34 chr9 21481268 21481472 -96381155 + MIR SINE MIR 56 258 -4 267 54 0 0 chr9 21481588 21481625 -96381002 + (TG)n Simple_repeat Simple_repeat 1 37 0 * 408 96 78 0 chr9 21481620 21481735 -96380892 + GA-rich Low_complexity Low_complexity 1 124 0 539 28 0 0 chr9 21481739 21481810 -96380817 + L1PA4 LINE L1 6085 6155 0 1521 209 173 30 chr9 21482142 21482616 -96380011 + MLT1F1 LTR MaLR 1 567 0 199 308 0 0 chr9 21482683 21482735 -96379892 - L2 LINE L2 -2 3270 3219 6802 26 7 0 chr9 21482765 21483612 -96379015 - L1P1 LINE L1 -1327 4819 3967 4586 31 1 0 chr9 21483611 21484515 -96378112 + L1P1 LINE L1 4817 5721 -434 * 3980 36 0 0 chr9 21484615 21485107 -96377520 + L1PA3 LINE L1 5668 6159 0 787 238 55 8 chr9 21485305 21485633 -96376994 + MLT2F LTR ERVL 1 390 -273 496 176 48 64 chr9 21485677 21485802 -96376825 + MLT2F LTR ERVL 479 601 -62 197 321 49 12 chr9 21486435 21486516 -96376111 + MIR SINE MIR 27 110 -98 622 206 59 0 chr9 21488745 21488881 -96373746 + MIR SINE MIR 83 226 -36 595 253 5 74 chr9 21489149 21489351 -96373276 - MIR SINE MIR -5 257 70 339 254 29 80 chr9 21489442 21489580 -96373047 - MIR SINE MIR -59 149 19 387 0 0 0 chr9 21490015 21490058 -96372569 + (CA)n Simple_repeat Simple_repeat 1 43 0 198 103 0 0 chr9 21492589 21492618 -96370009 + (ATG)n Simple_repeat Simple_repeat 1 29 0 628 237 48 79 chr9 21492640 21492868 -96369759 - MIR SINE MIR -24 238 18 207 254 0 0 chr9 21493029 21493084 -96369543 + GA-rich Low_complexity Low_complexity 2 56 0 277 241 11 46 chr9 21493248 21493335 -96369292 - MIR SINE MIR -30 232 149 850 232 110 4 chr9 21493345 21493599 -96369028 + MER5C DNA MER1_type 1 281 -43 202 213 59 132 chr9 21493629 21493765 -96368862 - MIR SINE MIR -80 128 3 814 159 0 8 chr9 21493888 21494020 -96368607 + FLAM_A SINE Alu 1 131 -2 416 283 125 11 chr9 21494311 21494495 -96368132 + MIR SINE MIR 1 205 -57 617 231 62 82 chr9 21495716 21495972 -96366655 - MLT1L LTR MaLR -220 395 145 340 285 235 24 chr9 21496264 21496453 -96366174 + MIR SINE MIR 19 244 -18 401 192 14 0 chr9 21496634 21496707 -96365920 - MER2 DNA MER2_type -5 340 267 183 42 0 0 chr9 21496732 21496756 -96365871 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1096 164 63 34 chr9 21496806 21497013 -96365614 - AluJo SINE Alu -97 215 3 997 208 5 14 chr9 21497024 21497076 -96365551 - MER2 DNA MER2_type -135 210 159 1918 152 124 26 chr9 21497076 21497464 -96365163 + MSTA LTR MaLR 1 426 -2 997 208 5 14 chr9 21497464 21497623 -96365004 - MER2 DNA MER2_type -186 159 1 321 26 0 0 chr9 21497945 21497983 -96364644 + (TG)n Simple_repeat Simple_repeat 1 38 0 268 288 32 0 chr9 21497993 21498118 -96364509 + L1MC4 LINE L1 7914 8042 0 503 261 170 0 chr9 21500026 21500179 -96362448 - MER5A DNA MER1_type -1 188 10 431 278 146 0 chr9 21500600 21500744 -96361883 + MIR SINE MIR 10 174 -88 246 276 40 0 chr9 21500925 21501001 -96361626 - L2 LINE L2 -225 3047 2969 454 200 48 9 chr9 21501049 21501154 -96361473 - MER5A DNA MER1_type -77 112 4 191 312 71 57 chr9 21501154 21501285 -96361342 - L2 LINE L2 -299 2973 2841 375 211 77 29 chr9 21502079 21502183 -96360444 - L2 LINE L2 0 3313 3205 252 305 62 80 chr9 21502932 21503403 -96359224 - L2 LINE L2 -213 3059 2619 3201 192 38 66 chr9 21503407 21504193 -96358434 + L1MB5 LINE L1 3531 4282 -1864 2270 101 0 3 chr9 21504193 21504490 -96358137 + AluSc SINE Alu 1 296 -13 3201 192 38 66 chr9 21504490 21504745 -96357882 + L1MB5 LINE L1 4282 4543 -1603 486 165 0 0 chr9 21504745 21504823 -96357804 + Tigger5 DNA MER2_type 1 78 -2245 434 190 0 0 chr9 21504823 21504902 -96357725 - Tigger5 DNA MER2_type -3 2320 2242 * 440 219 0 0 chr9 21504892 21504974 -96357653 + Tigger5 DNA MER2_type 2242 2323 0 1651 206 40 30 chr9 21504974 21505255 -96357372 + L1MB5 LINE L1 4542 4830 -1316 2012 159 0 0 chr9 21505255 21505551 -96357076 + AluSx SINE Alu 1 296 -16 1651 206 40 30 chr9 21505551 21505697 -96356930 + L1MB5 LINE L1 4830 4973 -1173 417 141 39 11 chr9 21505713 21505808 -96356819 + L1MC2 LINE L1 6242 7785 0 293 51 0 0 chr9 21505816 21505855 -96356772 + AluSq/x SINE Alu 95 133 -169 1495 227 54 143 chr9 21505859 21506672 -96355955 + L1ME1 LINE L1 5440 6161 -5 4232 174 28 27 chr9 21506694 21507875 -96354752 + L1MB5 LINE L1 4980 6167 -7 28 61 0 0 chr9 21510008 21510057 -96352570 + AT_rich Low_complexity Low_complexity 1 49 0 370 249 170 55 chr9 21510171 21510336 -96352291 + MIR SINE MIR 65 248 -14 199 408 41 0 chr9 21510821 21510990 -96351637 - L2 LINE L2 -357 2957 2782 * 559 317 11 6 chr9 21510985 21511165 -96351462 - MIR SINE MIR 0 262 82 440 185 0 12 chr9 21511172 21511253 -96351374 + Tigger7 DNA MER2_type 2 81 -624 2236 107 0 3 chr9 21511254 21511564 -96351063 + AluSc SINE Alu 1 309 0 390 91 0 0 chr9 21511719 21511774 -96350853 + (CATA)n Simple_repeat Simple_repeat 1 55 0 1987 137 72 23 chr9 21511775 21512256 -96350371 - MLT2A2 LTR ERVL -46 508 1 351 239 0 0 chr9 21512258 21512329 -96350298 + Tigger7 DNA MER2_type 2417 2487 0 187 279 0 0 chr9 21512331 21512374 -96350253 - MIR SINE MIR -219 43 1 494 293 127 19 chr9 21512396 21512703 -96349924 - L2 LINE L2 -536 2778 2439 270 197 28 0 chr9 21512827 21512898 -96349729 + MER103 DNA DNA 46 118 -48 403 274 121 0 chr9 21513746 21513870 -96348757 - MIR SINE MIR -44 218 80 201 177 0 129 chr9 21514251 21514313 -96348314 - L2 LINE L2 -3 3269 3216 431 266 185 21 chr9 21514622 21514822 -96347805 - MIR SINE MIR -12 250 20 23 0 0 0 chr9 21515942 21515965 -96346662 + AT_rich Low_complexity Low_complexity 1 23 0 567 339 87 4 chr9 21516277 21516507 -96346120 - MIR SINE MIR -1 261 13 2236 97 3 16 chr9 21517162 21517470 -96345157 + AluSq SINE Alu 2 305 -8 329 347 18 30 chr9 21517572 21517739 -96344888 - L2 LINE L2 -556 2758 2594 27 0 0 0 chr9 21518733 21518760 -96343867 + AT_rich Low_complexity Low_complexity 1 27 0 419 311 7 7 chr9 21518771 21518906 -96343721 - MIR SINE MIR -16 246 112 340 280 90 0 chr9 21519774 21519874 -96342753 + MIR SINE MIR 118 226 -36 188 266 89 89 chr9 21520704 21520862 -96341765 + MIR SINE MIR 16 173 -89 375 190 323 38 chr9 21520928 21521086 -96341541 - MIR SINE MIR -28 234 32 459 261 112 15 chr9 21523213 21523347 -96339280 - MIR SINE MIR -102 160 14 624 265 93 0 chr9 21523599 21523761 -96338866 + MER45A DNA AcHobo 2 178 0 230 322 81 0 chr9 21524129 21524303 -96338324 + L1ME LINE L1 5594 5781 -340 1142 193 52 0 chr9 21524326 21524538 -96338089 - MER58A DNA MER1_type 0 224 2 786 305 27 19 chr9 21526173 21526432 -96336195 - MIR SINE MIR 0 262 2 32 26 0 0 chr9 21526993 21527032 -96335595 + AT_rich Low_complexity Low_complexity 1 39 0 1929 80 30 0 chr9 21527152 21527452 -96335175 + L1MA3 LINE L1 5997 6305 0 391 313 92 24 chr9 21527617 21527820 -96334807 + MIR SINE MIR 48 262 0 511 256 19 0 chr9 21528079 21528235 -96334392 + MER117 DNA MER1_type 2 160 -37 271 284 0 11 chr9 21528316 21528411 -96334216 + (TA)n Simple_repeat Simple_repeat 1 94 0 2286 128 0 0 chr9 21528713 21529025 -96333602 - AluSx SINE Alu 0 312 1 1396 264 22 17 chr9 21529678 21530094 -96332533 + L1MA7 LINE L1 1 418 -5863 906 147 7 0 chr9 21530099 21530235 -96332392 + AluSg/x SINE Alu 168 304 -8 315 292 12 67 chr9 21530242 21530455 -96332172 + L1MA7 LINE L1 414 644 -4706 1782 265 34 55 chr9 21530768 21531443 -96331184 + L1MA7 LINE L1 832 1492 -4789 * 6493 42 0 0 chr9 21531439 21532253 -96330374 - L1PA5 LINE L1 0 6154 5341 1086 218 17 20 chr9 21532264 21532640 -96329987 + L1MA7 LINE L1 1488 1852 -4499 * 6671 183 26 33 chr9 21532638 21532976 -96329651 + L1MA7 LINE L1 3962 4301 -2194 2195 119 76 15 chr9 21532976 21533319 -96329308 - THE1B LTR MaLR 0 364 1 6671 183 26 33 chr9 21533319 21534756 -96327871 + L1MA7 LINE L1 4301 5747 -748 1814 170 3 23 chr9 21534756 21535056 -96327571 + AluJb SINE Alu 1 294 -18 6671 183 26 33 chr9 21535056 21535325 -96327302 + L1MA7 LINE L1 5747 6016 -479 207 0 0 0 chr9 21535325 21535348 -96327279 + (TA)n Simple_repeat Simple_repeat 1 23 0 6671 183 26 33 chr9 21535348 21535855 -96326772 + L1MA7 LINE L1 6016 6489 -6 985 256 183 13 chr9 21536006 21536471 -96326156 - MLT2F LTR ERVL -119 544 1 189 74 0 0 chr9 21537556 21537583 -96325044 + (CA)n Simple_repeat Simple_repeat 2 28 0 2186 128 0 7 chr9 21537846 21538152 -96324475 - AluSx SINE Alu -8 304 1 1494 173 71 66 chr9 21538293 21538783 -96323844 - MLT2A2 LTR ERVL 0 554 51 2329 82 0 3 chr9 21538783 21539076 -96323551 - AluY SINE Alu -19 292 1 1494 173 71 66 chr9 21539076 21539128 -96323499 - MLT2A2 LTR ERVL -503 51 1 211 172 0 47 chr9 21539321 21539385 -96323242 + CT-rich Low_complexity Low_complexity 4 64 0 313 269 173 10 chr9 21539498 21539602 -96323025 - MIR SINE MIR -18 244 124 1418 201 11 4 chr9 21539623 21539891 -96322736 + AluJb SINE Alu 11 280 -32 1237 44 8 12 chr9 21539891 21540138 -96322489 + (GAAA)n Simple_repeat Simple_repeat 1 246 0 256 254 0 0 chr9 21540256 21540319 -96322308 + (TATG)n Simple_repeat Simple_repeat 4 66 0 6899 65 1 1 chr9 21540470 21541644 -96320983 + L1PA7 LINE L1 4976 6151 -3 272 224 35 24 chr9 21541935 21542020 -96320607 + (CATATA)n Simple_repeat Simple_repeat 1 86 0 22 35 0 0 chr9 21542073 21542102 -96320525 + AT_rich Low_complexity Low_complexity 1 29 0 252 200 0 0 chr9 21542262 21542322 -96320305 + (TA)n Simple_repeat Simple_repeat 1 60 0 604 330 34 13 chr9 21543189 21543425 -96319202 - MIR SINE MIR 0 262 22 802 206 78 29 chr9 21545903 21546146 -96316481 + MER112 DNA MER1_type 1 255 -1 228 273 263 0 chr9 21546147 21546246 -96316381 + L2 LINE L2 3189 3313 0 354 349 78 0 chr9 21546893 21547059 -96315568 + MIR SINE MIR 3 181 -81 263 256 16 116 chr9 21547060 21547181 -96315446 - MER102b DNA MER1_type 0 341 233 325 263 0 0 chr9 21547254 21547334 -96315293 + MIR SINE MIR 183 262 0 2224 140 20 12 chr9 21547468 21547867 -96314760 + L1 LINE L1 4873 5274 -872 329 326 61 49 chr9 21597928 21598192 -96264435 + L3b LINE CR1 1281 1547 -36 435 362 33 76 chr9 21598882 21598933 -96263694 + L2 LINE L2 2943 2995 -277 1314 188 51 34 chr9 21598933 21599104 -96263523 - AluJb SINE Alu -15 297 117 271 42 62 0 chr9 21599104 21599152 -96263475 + T-rich Low_complexity Low_complexity 2 52 0 1314 188 51 34 chr9 21599152 21599272 -96263355 - AluJb SINE Alu -195 117 1 435 362 33 76 chr9 21599272 21599549 -96263078 + L2 LINE L2 2995 3257 -15 2919 88 0 8 chr9 21601173 21601558 -96261069 + L1PA7 LINE L1 5764 6145 -9 29860 50 1 2 chr9 21601626 21605273 -96257354 + L1PA3 LINE L1 9 3652 -2494 14863 33 1 0 chr9 21605416 21607876 -96254751 + L1PA3 LINE L1 3687 6152 -3 1843 182 35 18 chr9 21607917 21608257 -96254370 + MER7A DNA MER2_type 2 345 -1 3129 191 37 6 chr9 21608299 21608844 -96253783 + MER68 LTR ERV1 1 562 0 235 247 82 0 chr9 21609083 21609156 -96253471 - MIR3 SINE MIR -21 187 109 23 0 0 0 chr9 21609707 21609730 -96252897 + AT_rich Low_complexity Low_complexity 1 23 0 674 138 33 53 chr9 21609852 21610004 -96252623 + MER104 DNA Tc2 1 149 -31 1438 258 79 26 chr9 21610073 21610566 -96252061 + LTR33 LTR ERVL 3 521 0 555 250 171 0 chr9 21610592 21610732 -96251895 + MER5A DNA MER1_type 26 189 0 682 268 111 4 chr9 21612240 21612475 -96250152 + MIR SINE MIR 2 261 -1 2159 284 30 11 chr9 21612823 21613489 -96249138 + L1MEc LINE L1 36 714 -5682 180 77 0 0 chr9 21613644 21613670 -96248957 + (TTCA)n Simple_repeat Simple_repeat 4 29 0 3426 172 106 22 chr9 21613844 21614570 -96248057 - LTR48 LTR ERV1 0 787 1 543 299 67 14 chr9 21616139 21616377 -96246250 + MLT1J LTR MaLR 84 394 -117 416 304 130 0 chr9 21616607 21616745 -96245882 - MIR SINE MIR -87 175 20 654 272 31 51 chr9 21616767 21617021 -96245606 - MIR SINE MIR 0 262 14 22 0 0 0 chr9 21617559 21617581 -96245046 + AT_rich Low_complexity Low_complexity 1 22 0 339 228 12 7 chr9 21617697 21617800 -96244827 + L1M4 LINE L1 3628 3728 -2418 2090 241 55 48 chr9 21617800 21618369 -96244258 + MLT1E LTR MaLR 1 573 -20 1230 321 73 50 chr9 21618395 21618900 -96243727 + L1M4 LINE L1 3733 4249 -1897 1022 231 82 23 chr9 21618900 21619156 -96243471 - MLT1D LTR MaLR 0 505 235 1816 236 111 39 chr9 21619168 21619308 -96243319 - L1M4 LINE L1 -916 5230 5102 3020 125 29 9 chr9 21619308 21619755 -96242872 + L1PA15 LINE L1 5710 6165 0 1816 236 111 39 chr9 21619755 21620413 -96242214 - L1M4 LINE L1 -1044 5102 4374 320 286 0 12 chr9 21620697 21620781 -96241846 + MER5B DNA MER1_type 1 83 -95 850 257 11 0 chr9 21621119 21621294 -96241333 - MER45A DNA AcHobo 0 178 2 2242 113 6 3 chr9 21621440 21621751 -96240876 + AluSx SINE Alu 1 312 0 579 126 0 0 chr9 21622359 21622454 -96240173 + (GGAA)n Simple_repeat Simple_repeat 4 98 0 333 275 162 7 chr9 21622728 21622870 -96239757 + MIR3 SINE MIR 41 204 -4 659 284 65 35 chr9 21623045 21623274 -96239353 - MIR SINE MIR -19 243 8 2453 137 3 0 chr9 21623648 21623990 -96238637 + MER2 DNA MER2_type 1 343 -1 261 296 136 41 chr9 21624044 21624213 -96238414 - MIR3 SINE MIR -14 194 10 775 211 96 38 chr9 21624231 21624492 -96238135 + MLT1C LTR MaLR 192 467 0 401 189 0 7 chr9 21624578 21624667 -96237960 - L1P4 LINE L1 -430 5744 5658 243 277 0 32 chr9 21624619 21624713 -96237914 + L1MC4 LINE L1 6613 6703 -1339 * 1657 212 60 42 chr9 21624756 21625256 -96237371 + L1MA9 LINE L1 5782 6290 -22 1027 208 92 68 chr9 21626765 21627145 -96235482 + MLT1B LTR MaLR 1 389 -1 320 282 24 40 chr9 21627378 21627502 -96235125 - L1MC/D LINE L1 -2060 5748 5627 1702 25 0 0 chr9 21627504 21627702 -96234925 - L1PA4 LINE L1 -1748 4398 4201 8678 39 0 2 chr9 21627702 21629455 -96233172 + L1PA4 LINE L1 4397 6147 -8 497 190 141 63 chr9 21632118 21632260 -96230367 - MER63A DNA MER1_type -1 209 57 318 110 0 55 chr9 21632265 21632338 -96230289 + (TTCC)n Simple_repeat Simple_repeat 2 70 0 1909 152 3 13 chr9 21632835 21633138 -96229489 - AluJo SINE Alu -12 300 1 392 171 14 0 chr9 21635037 21635107 -96227520 - L2 LINE L2 0 3313 3243 9161 247 22 46 chr9 21635524 21639506 -96223121 + L1PA12 LINE L1 1 3357 -4227 6519 176 46 107 chr9 21639606 21640414 -96222213 - Charlie1 DNA MER1_type -165 2596 1740 2310 109 0 10 chr9 21640414 21640726 -96221901 - AluY SINE Alu -2 309 1 6519 176 46 107 chr9 21640726 21641048 -96221579 - Charlie1 DNA MER1_type -1021 1740 1400 2229 109 0 7 chr9 21641048 21641350 -96221277 + AluY SINE Alu 1 300 -11 6519 176 46 107 chr9 21641350 21642040 -96220587 - Charlie1 DNA MER1_type -1361 1400 887 209 67 0 44 chr9 21642353 21642398 -96220229 + (TTC)n Simple_repeat Simple_repeat 3 180 0 760 196 0 0 chr9 21642398 21642531 -96220096 - FLAM_C SINE Alu 0 178 1 283 246 191 16 chr9 21642544 21642670 -96219957 - MIR3 SINE MIR 0 208 61 209 171 0 0 chr9 21642979 21643014 -96219613 - MER5A DNA MER1_type 0 189 155 252 0 0 0 chr9 21643998 21644026 -96218601 + (CA)n Simple_repeat Simple_repeat 2 29 0 21 0 0 0 chr9 21644399 21644420 -96218207 + AT_rich Low_complexity Low_complexity 1 21 0 380 290 150 5 chr9 21645168 21645361 -96217266 + MARNA DNA Mariner 238 458 -128 1836 231 91 30 chr9 21645362 21645887 -96216740 + MER69 DNA AcHobo 1 557 -1969 2119 115 3 40 chr9 21646046 21646369 -96216258 + AluSx SINE Alu 1 311 -1 273 29 0 0 chr9 21647391 21647425 -96215202 + (GA)n Simple_repeat Simple_repeat 1 34 0 2022 143 10 0 chr9 21648348 21648649 -96213978 + AluJb SINE Alu 1 304 -8 789 223 143 89 chr9 21648784 21649335 -96213292 + L1ME4a LINE L1 5538 6118 -3 373 314 45 19 chr9 21649472 21649628 -96212999 - Charlie8 DNA MER1_type -2197 220 61 292 268 94 14 chr9 21649768 21649906 -96212721 - L1MC/D LINE L1 -2085 5723 5575 22 35 0 0 chr9 21650016 21650045 -96212582 + AT_rich Low_complexity Low_complexity 1 29 0 280 214 54 18 chr9 21650049 21650161 -96212466 - L1MC/D LINE L1 -758 5406 5291 599 250 62 10 chr9 21650460 21650769 -96211858 + L1ME3A LINE L1 5219 5553 -611 601 268 96 4 chr9 21650827 21651077 -96211550 + L1ME3A LINE L1 5683 5955 -215 231 125 0 0 chr9 21651202 21651242 -96211385 + (TG)n Simple_repeat Simple_repeat 2 41 0 302 306 127 30 chr9 21652070 21652204 -96210423 - L1MC/D LINE L1 -1328 4818 4672 30 27 0 0 chr9 21652557 21652594 -96210033 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr9 21653116 21653137 -96209490 + AT_rich Low_complexity Low_complexity 1 21 0 778 247 0 33 chr9 21653263 21653445 -96209182 - MER5B DNA MER1_type 0 178 3 450 290 23 22 chr9 21653446 21653606 -96209021 - MER5A DNA MER1_type -3 175 24 266 389 12 0 chr9 21654360 21654527 -96208100 - L1ME LINE L1 -380 5782 5614 683 263 77 16 chr9 21655135 21655329 -96207298 - MIR SINE MIR -10 252 47 26 0 0 0 chr9 21655330 21655356 -96207271 + AT_rich Low_complexity Low_complexity 1 26 0 541 282 42 35 chr9 21655372 21655566 -96207061 + MIR SINE MIR 10 202 -60 22 0 0 0 chr9 21655673 21655695 -96206932 + AT_rich Low_complexity Low_complexity 1 22 0 237 65 0 0 chr9 21656984 21657015 -96205612 + (A)n Simple_repeat Simple_repeat 1 31 0 2012 209 63 29 chr9 21657134 21657622 -96205005 - MLT1D LTR MaLR 0 505 1 290 290 93 9 chr9 21658036 21658143 -96204484 - L2 LINE L2 -23 3249 3134 292 160 0 0 chr9 21658194 21658244 -96204383 - MER5A DNA MER1_type -83 106 57 350 324 50 27 chr9 21658342 21658601 -96204026 - L2 LINE L2 -183 3089 2825 421 356 20 10 chr9 21659269 21659471 -96203156 - MIR SINE MIR -12 250 47 187 302 32 56 chr9 21660063 21660189 -96202438 + L2 LINE L2 3147 3269 -3 266 220 187 22 chr9 21660283 21660374 -96202253 - MER5A DNA MER1_type -10 179 74 2539 68 0 0 chr9 21660382 21660693 -96201934 - AluY SINE Alu 0 311 1 5749 124 37 31 chr9 21660713 21661499 -96201128 - L1MA8 LINE L1 -2 6289 5495 2078 116 3 7 chr9 21661499 21661809 -96200818 - AluSc SINE Alu 0 309 1 5749 124 37 31 chr9 21661809 21662160 -96200467 - L1MA8 LINE L1 -796 5495 5148 199 354 0 0 chr9 21662171 21662236 -96200391 - MER5A DNA MER1_type -124 65 1 383 227 21 0 chr9 21662532 21662629 -96199998 + MER103 DNA DNA 3 101 -65 6851 58 14 0 chr9 21663283 21664704 -96197923 - L1PA6 LINE L1 -2 6152 4728 332 319 58 26 chr9 21664756 21664947 -96197680 - MIR SINE MIR -55 207 11 262 356 185 33 chr9 21665400 21665670 -96196957 + L3 LINE CR1 32 342 -1235 215 242 137 112 chr9 21665744 21665905 -96196722 - MIR SINE MIR -1 261 97 557 306 57 26 chr9 21665992 21666257 -96196370 + L3 LINE CR1 418 690 -887 320 271 90 15 chr9 21668092 21668225 -96194402 + MIR SINE MIR 5 147 -115 573 196 14 20 chr9 21669936 21670084 -96192543 - L1MB3 LINE L1 -1 6182 6036 14586 208 16 12 chr9 21670085 21674741 -96187886 - L1PB1 LINE L1 -4 6863 2135 1329 211 144 36 chr9 21674761 21675239 -96187388 + LTR10B LTR ERV1 15 544 -3 3862 159 29 17 chr9 21675252 21676013 -96186614 - L1PB1 LINE L1 -4635 2227 1387 869 229 5 0 chr9 21676013 21676201 -96186426 - L1PB1 LINE L1 -6669 194 6 3880 181 45 8 chr9 21676212 21677141 -96185486 - L1MB4 LINE L1 -112 6068 5095 463 214 8 16 chr9 21677157 21677283 -96185344 - L1MC4 LINE L1 0 8042 7918 238 156 0 109 chr9 21677371 21677435 -96185192 - L1MC4 LINE L1 -130 7912 7856 419 259 14 42 chr9 21677438 21677581 -96185046 - LTR52 LTR ERVL -260 161 23 828 219 0 0 chr9 21677590 21677736 -96184891 + FRAM SINE Alu 1 146 -30 1898 244 51 12 chr9 21677788 21678357 -96184270 - L1MC4a LINE L1 -991 6817 6227 1108 198 118 4 chr9 21678360 21678597 -96184030 + AluJo SINE Alu 2 265 -47 2442 277 67 55 chr9 21678604 21680326 -96182301 - L1MC4a LINE L1 -743 5403 3703 16106 39 1 1 chr9 21680326 21683072 -96179555 - L1PA3 LINE L1 0 6155 3410 2442 277 67 55 chr9 21683072 21683221 -96179406 - L1MC4a LINE L1 -2443 3703 3557 422 209 22 108 chr9 21683221 21683360 -96179267 - FLAM_A SINE Alu -2 131 5 2442 277 67 55 chr9 21683360 21683668 -96178959 - L1MC4a LINE L1 -2589 3557 4002 280 43 21 21 chr9 21683668 21683715 -96178912 + (TG)n Simple_repeat Simple_repeat 2 48 0 2442 277 67 55 chr9 21683715 21684630 -96177997 - L1MC4a LINE L1 -2143 4003 3100 21 0 0 0 chr9 21684639 21684660 -96177967 + AT_rich Low_complexity Low_complexity 1 21 0 235 48 24 24 chr9 21684677 21684719 -96177908 + (CA)n Simple_repeat Simple_repeat 1 42 0 315 329 80 7 chr9 21684728 21685014 -96177613 + L1M4 LINE L1 4017 4323 -1823 789 172 44 59 chr9 21685379 21685583 -96177044 + MER106A DNA MER1_type 36 236 0 470 277 41 69 chr9 21685584 21686003 -96176624 - HAL1b LINE L1 -731 617 211 1465 215 27 52 chr9 21686170 21686538 -96176089 - MLT1A1 LTR MaLR 0 365 7 21 0 0 0 chr9 21686549 21686570 -96176057 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr9 21688825 21688849 -96173778 + AT_rich Low_complexity Low_complexity 1 24 0 246 62 0 0 chr9 21689679 21689711 -96172916 + (T)n Simple_repeat Simple_repeat 1 32 0 417 271 103 87 chr9 21689783 21690104 -96172523 + MLT1L LTR MaLR 197 522 -93 323 265 103 0 chr9 21690957 21691093 -96171534 - L1ME4a LINE L1 -15 6106 5957 365 338 41 14 chr9 21691296 21691441 -96171186 - MIR SINE MIR -94 168 20 282 286 71 0 chr9 21691657 21691797 -96170830 + L1ME4a LINE L1 5957 6106 -15 512 272 99 28 chr9 21693125 21693497 -96169130 + MLT1J2 LTR MaLR 4 436 -14 690 271 124 21 chr9 21693864 21694372 -96168255 - L1ME4a LINE L1 -3 6118 5513 458 257 35 0 chr9 21694597 21694710 -96167917 - MLT1I LTR MaLR -5 404 288 617 258 86 11 chr9 21694745 21694931 -96167696 - MLT1I LTR MaLR -208 201 2 1573 225 33 12 chr9 21695041 21695375 -96167252 + MER58B DNA MER1_type 1 341 0 321 298 0 57 chr9 21696881 21697005 -96165622 - MIR SINE MIR -50 212 96 363 313 37 29 chr9 21698679 21698922 -96163705 + L1MC4a LINE L1 5629 5873 -1935 26 50 0 0 chr9 21698931 21698971 -96163656 + AT_rich Low_complexity Low_complexity 1 40 0 185 231 0 15 chr9 21698998 21699063 -96163564 + (TA)n Simple_repeat Simple_repeat 2 65 0 22 35 0 0 chr9 21699220 21699249 -96163378 + AT_rich Low_complexity Low_complexity 1 29 0 27 0 0 0 chr9 21699344 21699371 -96163256 + AT_rich Low_complexity Low_complexity 1 27 0 209 356 0 14 chr9 21702266 21702339 -96160288 + MIR SINE MIR 25 96 -166 2185 125 3 0 chr9 21702484 21702795 -96159832 + AluSx SINE Alu 1 312 0 26 30 0 0 chr9 21702904 21702937 -96159690 + AT_rich Low_complexity Low_complexity 1 33 0 450 230 16 56 chr9 21703144 21703270 -96159357 + MER103 DNA DNA 46 166 0 27 0 0 0 chr9 21703271 21703298 -96159329 + AT_rich Low_complexity Low_complexity 1 27 0 1711 174 4 0 chr9 21703303 21703578 -96159049 - AluSx SINE Alu -36 276 1 223 238 25 75 chr9 21704246 21704326 -96158301 - MIR SINE MIR -161 101 26 236 143 71 0 chr9 21704592 21704634 -96157993 + MER94 DNA DNA 13 57 -77 283 197 98 0 chr9 21705703 21705764 -96156863 + L2 LINE L2 3206 3272 0 857 247 48 13 chr9 21705888 21706119 -96156508 - MIR SINE MIR -12 250 12 1249 228 90 41 chr9 21707572 21707962 -96154665 + MLT2B1 LTR ERVL 112 520 0 374 169 145 12 chr9 21707962 21708044 -96154583 - MLT1B LTR MaLR -297 93 1 1057 143 0 19 chr9 21708759 21708920 -96153707 + FRAM SINE Alu 1 157 -19 1336 261 127 49 chr9 21709025 21709680 -96152947 + MER50 LTR ERV1 10 715 -19 271 184 20 0 chr9 21710215 21710264 -96152363 + L2 LINE L2 3205 3254 -18 2750 129 48 22 chr9 21710880 21711297 -96151330 + MSTC LTR MaLR 1 428 0 2621 160 21 9 chr9 21712434 21712871 -96149756 - MSTB2 LTR MaLR -1 456 15 605 130 113 9 chr9 21713241 21713356 -96149271 - L2 LINE L2 0 3313 3187 25 65 0 0 chr9 21713363 21713409 -96149218 + AT_rich Low_complexity Low_complexity 1 46 0 277 283 17 42 chr9 21715307 21715427 -96147200 - LTR67 LTR ERVL 0 557 441 1753 226 38 29 chr9 21715783 21715971 -96146656 + MER39 LTR ERV1 250 435 -272 2422 117 22 30 chr9 21715971 21716338 -96146289 + THE1B LTR MaLR 1 364 0 1753 226 38 29 chr9 21716338 21716600 -96146027 + MER39 LTR ERV1 435 704 -3 451 309 52 56 chr9 21716648 21716881 -96145746 - L2 LINE L2 -36 3277 3046 * 601 314 30 21 chr9 21716866 21717102 -96145525 - L2 LINE L2 -444 2870 2633 2482 146 6 6 chr9 21718266 21718630 -96143997 - THE1B LTR MaLR 0 364 1 10497 96 16 71 chr9 21718630 21719702 -96142925 - THE1C-int LTR MaLR 0 1580 631 7558 55 2 3 chr9 21719702 21720829 -96141798 + L1PA5 LINE L1 5027 6153 -1 10497 96 16 71 chr9 21720829 21721427 -96141200 - THE1C-int LTR MaLR -949 631 2 2601 128 5 13 chr9 21721428 21721804 -96140823 - THE1C LTR MaLR 0 375 3 2292 119 0 0 chr9 21721829 21722139 -96140488 + AluSq SINE Alu 1 310 -3 1275 255 76 24 chr9 21722655 21723074 -96139553 - LTR16A1 LTR ERVL 0 457 17 674 261 157 22 chr9 21723213 21723531 -96139096 + MLT1D LTR MaLR 1 361 -144 1831 142 0 0 chr9 21723535 21723810 -96138817 - AluJb SINE Alu -37 275 1 2047 232 24 20 chr9 21723888 21724393 -96138234 - L1ME3A LINE L1 0 6170 5664 688 223 62 5 chr9 21724391 21724584 -96138043 - L1ME3A LINE L1 -1567 4579 4376 * 206 318 229 0 chr9 21724969 21725139 -96137488 - MIR SINE MIR -8 254 46 460 259 52 59 chr9 21725328 21725598 -96137029 - L1ME4a LINE L1 -279 5842 5575 231 240 107 13 chr9 21725748 21725823 -96136804 - L1M3 LINE L1 -749 5431 5350 1343 192 112 14 chr9 21726283 21726559 -96136068 - AluJo SINE Alu -8 304 2 234 234 0 31 chr9 21726564 21726628 -96135999 + MER103 DNA DNA 55 116 -50 8178 89 6 19 chr9 21726950 21728036 -96134591 - MER11C LTR ERVK 0 1071 1 267 331 50 25 chr9 21728680 21728801 -96133826 - MIR SINE MIR -82 180 57 399 243 45 27 chr9 21729037 21729148 -96133479 - MIR SINE MIR -44 218 106 1493 199 14 4 chr9 21729810 21730086 -96132541 + AluJo SINE Alu 5 283 -29 214 330 160 0 chr9 21730356 21730450 -96132177 - L2 LINE L2 0 3272 3164 350 299 65 14 chr9 21730964 21731128 -96131499 - MIR SINE MIR -63 145 16 2472 76 3 0 chr9 21731318 21731622 -96131005 + AluY SINE Alu 1 305 -6 1736 193 16 41 chr9 21731720 21732088 -96130539 + MSTD LTR MaLR 1 359 -37 2074 87 3 47 chr9 21732090 21732198 -96130429 + L1PB1 LINE L1 5866 5977 -174 2360 80 6 22 chr9 21732198 21732510 -96130117 + AluSc SINE Alu 1 307 -2 2074 87 3 47 chr9 21732510 21732700 -96129927 + L1PB1 LINE L1 5977 6151 0 380 94 0 0 chr9 21732735 21732788 -96129839 + MSTD LTR MaLR 344 396 0 1125 233 159 43 chr9 21732976 21733246 -96129381 - MSTD LTR MaLR -2 394 72 1859 168 20 0 chr9 21733246 21733549 -96129078 - AluJb SINE Alu -3 309 1 1125 233 159 43 chr9 21733549 21733630 -96128997 - MSTD LTR MaLR -324 72 2 22 80 0 0 chr9 21733882 21733932 -96128695 + AT_rich Low_complexity Low_complexity 1 50 0 1835 224 23 8 chr9 21734019 21734416 -96128211 - MLT1D LTR MaLR 0 505 103 1628 222 62 44 chr9 21734416 21734456 -96128171 - MLT2B2 LTR ERVL 0 515 477 868 94 7 7 chr9 21734456 21734594 -96128033 + (TAGA)n Simple_repeat Simple_repeat 4 141 0 1628 222 62 44 chr9 21734594 21734986 -96127641 - MLT2B2 LTR ERVL -38 477 75 489 127 0 0 chr9 21735083 21735154 -96127473 - MLT2B2 LTR ERVL -483 71 1 539 168 37 0 chr9 21735158 21735265 -96127362 - MLT1D LTR MaLR -394 111 1 647 261 79 19 chr9 21735549 21735764 -96126863 - MIR SINE MIR -6 256 29 252 0 0 0 chr9 21736406 21736434 -96126193 + (TG)n Simple_repeat Simple_repeat 2 29 0 1881 160 121 8 chr9 21737119 21737475 -96125152 + MSTD LTR MaLR 1 396 0 1012 292 157 14 chr9 21737524 21737991 -96124636 + MLT1G1 LTR MaLR 1 595 0 355 223 146 19 chr9 21738051 21738154 -96124473 - MER117 DNA MER1_type -80 117 2 2386 138 19 11 chr9 21738256 21738617 -96124010 + THE1B LTR MaLR 1 364 0 191 293 52 0 chr9 21738879 21738937 -96123690 + L2 LINE L2 3250 3310 -3 309 224 0 0 chr9 21738963 21739021 -96123606 + L2 LINE L2 3207 3264 -8 848 186 16 44 chr9 21739650 21739833 -96122794 - MER5B DNA MER1_type 0 178 1 217 293 10 71 chr9 21740696 21740795 -96121832 + MIR SINE MIR 100 192 -70 221 368 104 8 chr9 21740864 21740989 -96121638 + MIR3 SINE MIR 9 145 -63 888 268 123 40 chr9 21741297 21741719 -96120908 + MLT1L LTR MaLR 159 615 0 270 277 19 129 chr9 21742564 21742820 -96119807 + MER102a DNA MER1_type 93 320 -10 465 239 127 0 chr9 21742849 21742983 -96119644 + MER117 DNA MER1_type 10 160 -37 329 322 58 53 chr9 21743073 21743244 -96119383 + MIR SINE MIR 36 207 -55 1826 152 37 39 chr9 21743852 21744207 -96118420 + MLT1A1 LTR MaLR 10 363 -2 339 314 38 9 chr9 21744406 21744511 -96118116 - MIR SINE MIR -80 128 21 578 258 137 0 chr9 21744542 21744732 -96117895 - MIR SINE MIR -1 261 46 1727 209 22 6 chr9 21744830 21745189 -96117438 - MLT1A1 LTR MaLR 0 365 1 291 260 13 39 chr9 21746298 21746375 -96116252 + L2 LINE L2 3239 3313 0 738 248 139 0 chr9 21746510 21746740 -96115887 + MIR SINE MIR 1 262 0 241 239 82 114 chr9 21747282 21747466 -96115161 + L2 LINE L2 3124 3301 -12 228 222 0 0 chr9 21748927 21748972 -96113655 + (TG)n Simple_repeat Simple_repeat 2 46 0 24 0 0 0 chr9 21749314 21749338 -96113289 + AT_rich Low_complexity Low_complexity 1 24 0 431 336 149 5 chr9 21750951 21751165 -96111462 - MIR SINE MIR -13 249 5 263 188 0 0 chr9 21752779 21752827 -96109800 - MIR SINE MIR -125 137 90 308 246 0 0 chr9 21752904 21752969 -96109658 + Zaphod DNA AcHobo 1 65 -3966 663 146 15 102 chr9 21753105 21753311 -96109316 + MER53 DNA DNA 2 189 0 1093 209 58 102 chr9 21753373 21753766 -96108861 - MLT1B LTR MaLR 0 390 15 273 337 0 0 chr9 21753783 21753884 -96108743 + MER115 DNA AcHobo 335 435 -258 345 328 66 11 chr9 21754167 21754350 -96108277 + MIR SINE MIR 59 251 -11 296 318 28 9 chr9 21755052 21755159 -96107468 + MIR SINE MIR 21 129 -133 214 150 25 0 chr9 21755190 21755230 -96107397 + L2 LINE L2 3214 3254 -18 358 240 139 62 chr9 21756471 21756600 -96106027 - L2 LINE L2 0 3272 3134 41988 42 2 1 chr9 21756628 21762766 -96099861 + L1PA4 LINE L1 7 6152 -3 209 190 224 0 chr9 21762935 21762993 -96099634 + L2 LINE L2 3201 3271 -1 740 288 37 21 chr9 21763062 21763305 -96099322 - MIR SINE MIR -14 248 2 295 320 0 0 chr9 21766503 21766578 -96096049 + polypyrimidine Low_complexity Low_complexity 2 76 0 28 29 0 0 chr9 21766915 21766950 -96095677 + AT_rich Low_complexity Low_complexity 1 35 0 230 253 131 0 chr9 21767150 21767249 -96095378 - L1MC/D LINE L1 -2038 5839 5728 1100 216 186 43 chr9 21767346 21767744 -96094883 - LTR16A1 LTR ERVL -2 455 1 201 39 0 0 chr9 21767782 21767808 -96094819 + (TCCC)n Simple_repeat Simple_repeat 3 28 0 237 271 0 0 chr9 21767810 21767858 -96094769 + C-rich Low_complexity Low_complexity 4 51 0 287 330 19 19 chr9 21767952 21768167 -96094460 - L1MC/D LINE L1 -575 5664 5450 307 325 36 34 chr9 21768202 21768327 -96094300 - L1MC/D LINE L1 -1052 5163 5040 1859 151 43 32 chr9 21768327 21768697 -96093930 + THE1C LTR MaLR 2 375 0 307 325 36 34 chr9 21768697 21768928 -96093699 - L1MC/D LINE L1 -1175 5040 4806 581 163 0 0 chr9 21769054 21769146 -96093481 - FLAM_C SINE Alu -38 105 14 560 279 172 31 chr9 21769162 21770033 -96092594 - L1MC/D LINE L1 -1561 4654 3661 363 306 65 26 chr9 21770098 21770327 -96092300 - L1MC/D LINE L1 -4098 2298 2061 22 56 0 0 chr9 21770489 21770525 -96092102 + AT_rich Low_complexity Low_complexity 1 36 0 343 328 64 0 chr9 21770606 21770777 -96091850 - L1MC/D LINE L1 -4703 1693 1512 395 385 31 10 chr9 21770777 21770972 -96091655 - HAL1 LINE L1 -1053 1454 1256 412 302 94 7 chr9 21771102 21771251 -96091376 + L2 LINE L2 2469 2630 -684 271 292 45 0 chr9 21771473 21771562 -96091065 + L2 LINE L2 3221 3313 0 811 222 22 5 chr9 21773593 21773778 -96088849 + MLT1E LTR MaLR 406 593 0 1627 232 46 23 chr9 21775027 21775505 -96087122 - L1ME3A LINE L1 -25 6145 5657 22 56 0 0 chr9 21777014 21777050 -96085577 + AT_rich Low_complexity Low_complexity 1 36 0 2101 152 0 6 chr9 21777143 21777498 -96085129 + MLT1A1 LTR MaLR 1 353 -12 273 383 13 40 chr9 21777640 21777789 -96084838 - L2 LINE L2 -2 3270 3126 931 191 77 23 chr9 21777813 21777860 -96084767 - L1MB1 LINE L1 -1 6167 6124 2268 97 3 10 chr9 21777860 21778168 -96084459 - AluY SINE Alu -5 306 1 931 191 77 23 chr9 21778168 21778340 -96084287 - L1MB1 LINE L1 -44 6124 5936 * 1164 189 35 2 chr9 21778333 21778599 -96084028 + L1MB1 LINE L1 5693 5937 -231 244 257 139 10 chr9 21778610 21778711 -96083916 + MIR SINE MIR 149 262 0 375 271 181 23 chr9 21779092 21779302 -96083325 - L1M4 LINE L1 -3081 3065 2803 1952 123 7 7 chr9 21779302 21779603 -96083024 - L1PA10 LINE L1 0 6168 5868 375 271 181 23 chr9 21779603 21779658 -96082969 - L1M4 LINE L1 -3343 2803 2758 237 189 19 0 chr9 21779673 21779726 -96082901 + (TA)n Simple_repeat Simple_repeat 1 54 0 1437 110 0 0 chr9 21779949 21780131 -96082496 - AluSx SINE Alu -130 182 1 2183 113 3 0 chr9 21780978 21781269 -96081358 - AluSp SINE Alu -21 292 1 2062 60 24 94 chr9 21781696 21782027 -96080600 + AluYb8 SINE Alu 1 308 -10 570 258 129 5 chr9 21783351 21783545 -96079082 - MIR SINE MIR 0 262 45 302 273 182 49 chr9 21784630 21784773 -96077854 + L2 LINE L2 3111 3272 0 211 277 48 48 chr9 21784822 21784905 -96077722 - L2 LINE L2 -5 3267 3185 216 376 120 0 chr9 21785386 21785511 -96077116 - L2 LINE L2 0 3272 3133 317 206 49 108 chr9 21785541 21785722 -96076905 - Charlie1 DNA MER1_type 0 2761 2591 2083 88 33 0 chr9 21785722 21786020 -96076607 + AluSg SINE Alu 1 307 0 317 206 49 108 chr9 21786020 21786041 -96076586 - Charlie1 DNA MER1_type -170 2591 2570 213 175 123 18 chr9 21786537 21786594 -96076033 - MIR3 SINE MIR -133 75 13 497 344 82 29 chr9 21787741 21788020 -96074607 + L2 LINE L2 2979 3272 0 23 0 0 0 chr9 21788219 21788242 -96074385 + AT_rich Low_complexity Low_complexity 1 23 0 386 286 94 49 chr9 21788348 21788551 -96074076 - MIR SINE MIR -14 248 37 263 206 0 73 chr9 21788566 21788702 -96073925 + A-rich Low_complexity Low_complexity 4 129 0 274 325 114 8 chr9 21788809 21788932 -96073695 + L2 LINE L2 3133 3268 -4 191 280 59 110 chr9 21788959 21789077 -96073550 + L3 LINE CR1 106 217 -1360 212 283 0 0 chr9 21790707 21790753 -96071874 + (TATG)n Simple_repeat Simple_repeat 2 47 0 374 239 100 25 chr9 21790753 21790829 -96071798 - MLT2C1 LTR ERVL -55 342 273 376 238 93 46 chr9 21790829 21790980 -96071647 - MLT1E3 LTR MaLR -405 219 62 374 239 100 25 chr9 21790980 21791020 -96071607 - MLT2C1 LTR ERVL -124 273 1 28 0 0 0 chr9 21791031 21791059 -96071568 + AT_rich Low_complexity Low_complexity 1 28 0 834 280 119 47 chr9 21793117 21793809 -96068818 + L2 LINE L2 2554 3308 -5 333 0 0 0 chr9 21794001 21794038 -96068589 + (TG)n Simple_repeat Simple_repeat 2 38 0 3838 184 50 18 chr9 21794041 21795338 -96067289 - L1MB5 LINE L1 -17 6157 4809 182 147 0 0 chr9 21796376 21796410 -96066217 - MIR SINE MIR -122 140 107 311 289 71 15 chr9 21797584 21797781 -96064846 + L1MC/D LINE L1 5270 5477 -2331 2958 209 30 25 chr9 21797798 21798431 -96064196 + L1M1 LINE L1 17 652 -6913 468 226 0 0 chr9 21798589 21798682 -96063945 + MIR SINE MIR 52 144 -64 184 286 0 0 chr9 21798736 21798785 -96063842 + L2 LINE L2 3167 3215 -98 235 272 302 13 chr9 21798858 21799014 -96063613 - MIR SINE MIR -48 214 17 388 353 53 5 chr9 21800279 21800486 -96062141 - MIR SINE MIR -42 220 4 307 293 55 37 chr9 21800486 21800595 -96062032 + MIR SINE MIR 87 198 -64 1859 197 28 30 chr9 21800597 21800958 -96061669 + MLT1A1 LTR MaLR 3 362 -3 2697 39 3 0 chr9 21802192 21802502 -96060125 + AluY SINE Alu 1 311 0 364 265 157 27 chr9 21803738 21803923 -96058704 + HAL1b LINE L1 52 260 -1088 296 226 16 0 chr9 21804011 21804073 -96058554 - Charlie1a DNA MER1_type 0 1455 1393 1280 224 27 71 chr9 21804077 21804104 -96058523 - MLT2D LTR ERVL -8 456 429 426 85 0 0 chr9 21804104 21804163 -96058464 + (CGGA)n Simple_repeat Simple_repeat 2 60 0 2269 125 44 39 chr9 21804167 21804528 -96058099 + THE1B LTR MaLR 2 364 0 1280 224 27 71 chr9 21804528 21804925 -96057702 - MLT2D LTR ERVL -38 426 1 2163 184 110 7 chr9 21804929 21805509 -96057118 - Charlie1a DNA MER1_type -62 1393 754 1809 226 19 2 chr9 21805673 21806084 -96056543 - Charlie1a DNA MER1_type -708 747 330 659 195 152 6 chr9 21806069 21806233 -96056394 - Charlie1a DNA MER1_type -1231 224 37 * 38 0 0 0 chr9 21806237 21806275 -96056352 + AT_rich Low_complexity Low_complexity 1 38 0 1474 135 65 4 chr9 21806277 21806537 -96056090 - L1MA2 LINE L1 -4 6300 6025 182 83 0 0 chr9 21806538 21806562 -96056065 - MER5A DNA MER1_type -165 24 1 292 267 145 15 chr9 21806562 21806693 -96055934 + HAL1b LINE L1 355 502 -846 2219 113 3 3 chr9 21806861 21807171 -96055456 + AluSp SINE Alu 1 310 -3 390 245 66 0 chr9 21807270 21807376 -96055251 - L1MA9 LINE L1 -261 6051 5939 * 909 209 20 35 chr9 21807358 21807587 -96055040 + L1MA9 LINE L1 6016 6144 -24 1564 122 11 66 chr9 21807851 21808138 -96054489 + MLT1B LTR MaLR 120 390 0 540 238 38 75 chr9 21808286 21808527 -96054100 - MLT1J LTR MaLR 0 511 313 375 276 61 0 chr9 21808802 21808900 -96053727 + MER94 DNA DNA 10 113 -21 451 217 29 91 chr9 21809057 21809232 -96053395 - MER5A DNA MER1_type -22 167 4 420 289 47 23 chr9 21809656 21809784 -96052843 - L2 LINE L2 -1 3271 3141 1083 263 59 130 chr9 21810385 21810586 -96052041 + MLT1G1 LTR MaLR 1 215 -380 1692 154 100 4 chr9 21810586 21810866 -96051761 + AluSx SINE Alu 1 307 -5 1083 263 59 130 chr9 21810866 21811304 -96051323 + MLT1G1 LTR MaLR 215 595 0 259 347 0 0 chr9 21811420 21811495 -96051132 - MIR SINE MIR -105 157 83 526 271 51 17 chr9 21811541 21811743 -96050884 + MIR SINE MIR 36 242 -20 216 284 60 0 chr9 21811751 21811818 -96050809 + L2 LINE L2 3201 3271 -1 670 283 78 22 chr9 21813005 21813185 -96049442 - MER91A DNA MER1_type -2 194 5 2381 169 39 41 chr9 21814618 21814702 -96047925 - MLT1C LTR MaLR 0 467 384 1478 186 59 10 chr9 21814702 21814992 -96047635 - AluJo SINE Alu -8 304 1 2381 169 39 41 chr9 21814992 21815375 -96047252 - MLT1C LTR MaLR -83 384 1 180 0 0 0 chr9 21817065 21817085 -96045542 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 228 229 0 0 chr9 21817100 21817148 -96045479 + L1MC4 LINE L1 6656 6703 -1339 273 57 0 0 chr9 21817152 21817187 -96045440 + (CA)n Simple_repeat Simple_repeat 2 36 0 12548 146 31 28 chr9 21817187 21819226 -96043401 + Ricksha_c DNA DNA 3 2046 0 238 293 0 13 chr9 21819227 21819302 -96043325 - MIR SINE MIR -182 80 7 285 284 173 31 chr9 21820223 21820326 -96042301 - MIR SINE MIR -33 229 142 2230 106 3 3 chr9 21820326 21820627 -96042000 - AluSx SINE Alu -11 301 1 285 284 173 31 chr9 21820627 21820685 -96041942 - MIR SINE MIR -120 142 45 515 237 38 8 chr9 21820771 21820902 -96041725 - MIR SINE MIR -29 233 99 360 285 88 22 chr9 21821840 21821977 -96040650 - MIR SINE MIR -115 147 2 240 254 28 0 chr9 21822142 21822213 -96040414 + (TAGA)n Simple_repeat Simple_repeat 4 76 0 1190 90 6 12 chr9 21822222 21822388 -96040239 - L1MA2 LINE L1 -4 6300 6136 22 0 0 0 chr9 21822832 21822854 -96039773 + AT_rich Low_complexity Low_complexity 1 22 0 350 203 239 22 chr9 21823418 21823556 -96039071 - L1ME4a LINE L1 0 6121 5954 6406 138 34 13 chr9 21823683 21824878 -96037749 - L1MC1 LINE L1 -13 6320 5102 526 293 114 21 chr9 21824888 21825178 -96037449 - L1ME4a LINE L1 -299 5822 5506 412 272 44 63 chr9 21826807 21826965 -96035662 - MIR SINE MIR -77 185 31 2221 102 7 0 chr9 21827209 21827503 -96035124 - AluSc SINE Alu -13 296 1 391 305 58 40 chr9 21827720 21827868 -96034759 - MIR SINE MIR -37 225 72 2395 137 40 13 chr9 21827868 21828248 -96034379 - MLT1B LTR MaLR 0 390 1 391 305 58 40 chr9 21828248 21828273 -96034354 - MIR SINE MIR -190 72 49 180 0 0 0 chr9 21828420 21828440 -96034187 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2214 97 0 3 chr9 21828787 21829075 -96033552 - AluSx SINE Alu -3 309 23 1346 241 96 7 chr9 21829088 21829516 -96033111 + MER113 DNA MER1_type? 6 471 -50 347 173 130 130 chr9 21830061 21830246 -96032381 + MER5A DNA MER1_type 4 188 -1 355 339 33 6 chr9 21830369 21830552 -96032075 + MIR SINE MIR 52 239 -23 548 283 80 26 chr9 21830563 21830935 -96031692 - L2 LINE L2 -6 3307 2874 200 265 48 24 chr9 21831565 21831648 -96030979 - MIR SINE MIR -70 192 108 445 200 19 90 chr9 21831881 21832036 -96030591 - MLT1D LTR MaLR -361 144 1 180 297 22 44 chr9 21832912 21833003 -96029624 - L2 LINE L2 -5 3267 3179 1550 294 93 47 chr9 21833719 21834820 -96027807 - L2 LINE L2 -1 3312 2158 300 322 67 38 chr9 21835181 21835600 -96027027 + L1MC/D LINE L1 3991 4421 -1725 533 281 122 50 chr9 21835647 21836533 -96026094 + L1MC/D LINE L1 4633 5615 -974 2377 92 0 3 chr9 21836533 21836839 -96025788 - AluY SINE Alu -6 305 1 533 281 122 50 chr9 21836839 21837032 -96025595 + L1MC/D LINE L1 5615 5793 -796 188 269 96 0 chr9 21837438 21837490 -96025137 + MIR SINE MIR 206 262 0 229 273 0 15 chr9 21837844 21837910 -96024717 + MLT1K LTR MaLR 182 246 -342 180 0 0 0 chr9 21838221 21838241 -96024386 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1021 201 159 70 chr9 21838529 21838926 -96023701 - MSTB1 LTR MaLR 0 432 1 1621 215 49 62 chr9 21838926 21839392 -96023235 - MLT1C LTR MaLR -7 460 1 488 281 75 26 chr9 21839446 21839880 -96022747 - LTR33A LTR ERVL -20 503 4 724 209 0 0 chr9 21840847 21840976 -96021651 - FRAM SINE Alu -19 157 29 192 271 0 21 chr9 21841666 21841714 -96020913 + L2 LINE L2 3267 3313 0 310 276 127 15 chr9 21842481 21842615 -96020012 - L2 LINE L2 -2 3270 3122 470 250 0 10 chr9 21845293 21845389 -96017238 - MER5B DNA MER1_type -16 162 68 1436 191 118 0 chr9 21846028 21846290 -96016337 + AluJb SINE Alu 1 293 -9 258 221 59 0 chr9 21848584 21848652 -96013975 - MIR SINE MIR -10 252 181 486 241 162 16 chr9 21848663 21848854 -96013773 + L2 LINE L2 2686 2904 -410 333 257 191 14 chr9 21848901 21849111 -96013516 + L2 LINE L2 3020 3266 -47 341 193 104 0 chr9 21849151 21849245 -96013382 - MIR SINE MIR -62 146 57 290 324 157 0 chr9 21849685 21849793 -96012834 + L2 LINE L2 3148 3272 0 2028 128 3 46 chr9 21850110 21850437 -96012190 + AluSq SINE Alu 1 313 0 1337 228 137 30 chr9 21850864 21850989 -96011638 + MLT1E LTR MaLR 70 180 -413 2356 92 0 0 chr9 21850989 21851284 -96011343 - AluSc SINE Alu -14 295 1 1337 228 137 30 chr9 21851284 21851631 -96010996 + MLT1E LTR MaLR 180 593 0 340 341 70 26 chr9 21851744 21852014 -96010613 + L2 LINE L2 2693 2974 -340 21 36 0 0 chr9 21854456 21854484 -96008143 + AT_rich Low_complexity Low_complexity 1 28 0 437 267 156 39 chr9 21854779 21855336 -96007291 + L1MC4 LINE L1 7301 8029 -13 22 0 0 0 chr9 21855336 21855358 -96007269 + AT_rich Low_complexity Low_complexity 1 22 0 307 265 17 77 chr9 21855912 21856029 -96006598 - MER5A DNA MER1_type -25 164 55 270 270 180 0 chr9 21856085 21856196 -96006431 + MER5B DNA MER1_type 9 139 -39 441 242 105 16 chr9 21856196 21856320 -96006307 + MER5B DNA MER1_type 13 147 -31 262 278 0 56 chr9 21856740 21856812 -96005815 + L2 LINE L2 3240 3307 -6 1924 218 64 15 chr9 21857052 21857230 -96005397 + MLT1D LTR MaLR 1 169 -336 1865 157 14 3 chr9 21857230 21857517 -96005110 + AluJo SINE Alu 7 296 -16 1924 218 64 15 chr9 21857517 21857819 -96004808 + MLT1D LTR MaLR 169 505 0 560 299 72 23 chr9 21858764 21858985 -96003642 - MIR SINE MIR -1 261 30 499 214 1 1 chr9 21859658 21859761 -96002866 + MER39 LTR ERV1 1 103 -439 2245 84 3 3 chr9 21859810 21860097 -96002530 + AluSq SINE Alu 2 288 -25 1488 188 116 8 chr9 21860097 21860458 -96002169 + MER39 LTR ERV1 308 707 0 517 231 0 0 chr9 21860572 21860676 -96001951 - MER94 DNA DNA -4 130 27 766 270 6 0 chr9 21860676 21860850 -96001777 + FAM SINE Alu 1 175 0 2359 80 0 10 chr9 21861011 21861323 -96001304 + AluY SINE Alu 1 309 -2 310 222 52 67 chr9 21861401 21861536 -96001091 + MER103 DNA DNA 19 151 -15 503 249 85 30 chr9 21861600 21861765 -96000862 - L2 LINE L2 -5 3308 3135 513 32 0 0 chr9 21862223 21862286 -96000341 + (CA)n Simple_repeat Simple_repeat 1 63 0 22 0 0 0 chr9 21864025 21864047 -95998580 + AT_rich Low_complexity Low_complexity 1 22 0 291 93 0 0 chr9 21864925 21864968 -95997659 + (TA)n Simple_repeat Simple_repeat 2 44 0 270 0 0 0 chr9 21865285 21865315 -95997312 + (A)n Simple_repeat Simple_repeat 1 30 0 25 0 0 0 chr9 21866477 21866502 -95996125 + AT_rich Low_complexity Low_complexity 1 25 0 186 71 0 0 chr9 21868480 21868508 -95994119 + (A)n Simple_repeat Simple_repeat 1 28 0 231 114 0 0 chr9 21869176 21869211 -95993416 + (A)n Simple_repeat Simple_repeat 1 35 0 404 259 38 8 chr9 21869228 21869359 -95993268 + L1ME3A LINE L1 5983 6117 -53 363 371 54 5 chr9 21869529 21869750 -95992877 - L1M4 LINE L1 -1991 4155 3924 268 348 35 30 chr9 21870486 21870687 -95991940 + MLT1J LTR MaLR 216 417 -94 200 184 0 0 chr9 21870919 21870957 -95991670 + (CA)n Simple_repeat Simple_repeat 1 38 0 319 318 45 32 chr9 21871223 21871414 -95991213 + MIR SINE MIR 20 208 -54 2666 23 0 0 chr9 21872415 21872717 -95989910 + AluYa5 SINE Alu 1 302 -9 189 0 0 0 chr9 21877197 21877218 -95985409 + (A)n Simple_repeat Simple_repeat 1 21 0 208 324 68 0 chr9 21878055 21878129 -95984498 + MIR SINE MIR 12 90 -172 192 351 0 0 chr9 21878137 21878194 -95984433 + MIR3 SINE MIR 137 193 -15 218 255 0 0 chr9 21880031 21880078 -95982549 + CT-rich Low_complexity Low_complexity 5 51 0 306 0 0 0 chr9 21880083 21880117 -95982510 + (CA)n Simple_repeat Simple_repeat 1 34 0 2317 70 33 7 chr9 21880976 21881277 -95981350 + AluSc SINE Alu 1 309 0 338 260 72 11 chr9 21882300 21882460 -95980167 - MIR SINE MIR 0 262 93 586 271 187 5 chr9 21883073 21883287 -95979340 - MIR SINE MIR -8 254 2 483 256 153 17 chr9 21884515 21884691 -95977936 - MIR SINE MIR -25 237 38 500 168 232 24 chr9 21884691 21884816 -95977811 - FRAM SINE Alu -18 158 8 363 200 0 0 chr9 21885087 21885152 -95977475 - MER2 DNA MER2_type -5 340 276 1413 152 123 29 chr9 21885156 21885432 -95977195 + AluJo SINE Alu 1 302 0 580 137 199 48 chr9 21885432 21885573 -95977054 + AluJo/FRAM SINE Alu 134 296 -16 1128 177 5 19 chr9 21885610 21885819 -95976808 - MER2 DNA MER2_type -139 206 1 289 250 57 93 chr9 21886402 21886542 -95976085 + MIR SINE MIR 115 249 -13 28 0 0 0 chr9 21887493 21887521 -95975106 + AT_rich Low_complexity Low_complexity 1 28 0 32 57 0 0 chr9 21887576 21887629 -95974998 + AT_rich Low_complexity Low_complexity 1 53 0 512 267 118 52 chr9 21888632 21889208 -95973419 + L1MEd LINE L1 613 1226 -4893 659 222 53 76 chr9 21889350 21889652 -95972975 - MER63 DNA MER1_type -1 1061 767 305 309 0 12 chr9 21890117 21890201 -95972426 - L2 LINE L2 -21 3251 3169 671 226 0 0 chr9 21890461 21890576 -95972051 + FLAM_A SINE Alu 1 115 -18 474 148 33 66 chr9 21890603 21890725 -95971902 - L1ME3 LINE L1 -6 6156 6039 22 35 0 0 chr9 21891524 21891553 -95971074 + AT_rich Low_complexity Low_complexity 1 29 0 1192 344 155 20 chr9 21891846 21892524 -95970103 - L3 LINE CR1 -372 1205 379 2121 98 4 7 chr9 21892524 21892798 -95969829 + AluSq SINE Alu 22 294 -19 1192 344 155 20 chr9 21892798 21893001 -95969626 - L3 LINE CR1 -1198 379 205 367 250 202 27 chr9 21895957 21896145 -95966482 - MIR SINE MIR -13 249 29 1215 182 105 0 chr9 21897738 21897996 -95964631 - AluJo SINE Alu -16 296 12 234 262 83 12 chr9 21898982 21899066 -95963561 - L2 LINE L2 -16 3297 3208 2129 217 75 70 chr9 21899428 21900351 -95962276 + L1MC5 LINE L1 6991 7917 -44 206 304 152 22 chr9 21900820 21900912 -95961715 + L2 LINE L2 3206 3309 -4 874 257 63 73 chr9 21901109 21901506 -95961121 - MLT1J LTR MaLR -114 397 5 244 261 117 27 chr9 21902775 21902886 -95959741 + MIR3 SINE MIR 88 208 0 1829 171 0 10 chr9 21903449 21903748 -95958879 - AluJb SINE Alu -14 298 3 1701 188 7 3 chr9 21904143 21904435 -95958192 - AluJo SINE Alu -19 293 1 26 0 0 0 chr9 21904593 21904619 -95958008 + AT_rich Low_complexity Low_complexity 1 26 0 231 227 61 61 chr9 21905127 21905193 -95957434 + MIR SINE MIR 23 88 -174 2218 126 0 0 chr9 21905459 21905768 -95956859 + AluSx SINE Alu 1 309 -3 628 150 0 26 chr9 21905775 21905888 -95956739 + FLAM_A SINE Alu 21 130 -12 703 251 31 26 chr9 21907299 21907494 -95955133 + MIR SINE MIR 49 244 -18 612 254 73 17 chr9 21909983 21910160 -95952467 - MIR SINE MIR -44 218 32 201 157 0 137 chr9 21910643 21910694 -95951933 - MIR3 SINE MIR -23 185 142 264 261 268 0 chr9 21911577 21911719 -95950908 + MER112 DNA MER1_type 69 248 -12 216 286 18 0 chr9 21912520 21912576 -95950051 + L3 LINE CR1 1519 1575 -2 410 217 9 9 chr9 21912772 21912878 -95949749 + L1MA10 LINE L1 6229 6334 0 1050 32 0 0 chr9 21913906 21914032 -95948595 + (CTG)n Simple_repeat Simple_repeat 1 126 0 192 353 87 17 chr9 21914492 21914665 -95947962 - L2 LINE L2 -237 3035 2851 24 0 0 0 chr9 21916441 21916465 -95946162 + AT_rich Low_complexity Low_complexity 1 24 0 211 28 56 0 chr9 21916806 21916842 -95945785 + (TA)n Simple_repeat Simple_repeat 2 39 0 198 0 0 0 chr9 21921027 21921049 -95941578 + (A)n Simple_repeat Simple_repeat 1 22 0 206 324 68 0 chr9 21921885 21921959 -95940668 + MIR SINE MIR 12 90 -172 192 351 0 0 chr9 21921967 21922024 -95940603 + MIR3 SINE MIR 137 193 -15 218 255 0 0 chr9 21923861 21923908 -95938719 + CT-rich Low_complexity Low_complexity 5 51 0 306 0 0 0 chr9 21923913 21923947 -95938680 + (CA)n Simple_repeat Simple_repeat 1 34 0 2321 66 33 7 chr9 21924806 21925107 -95937520 + AluSc SINE Alu 1 309 0 340 260 72 11 chr9 21926129 21926289 -95936338 - MIR SINE MIR 0 262 93 579 271 187 5 chr9 21926902 21927116 -95935511 - MIR SINE MIR -8 254 2 198 0 0 0 chr9 21928638 21928660 -95933967 + (T)n Simple_repeat Simple_repeat 1 22 0 1697 102 8 43 chr9 21931255 21931546 -95931081 - AluY SINE Alu 0 315 34 629 56 34 0 chr9 21931976 21931992 -95930635 + L1P LINE L1 5332 5346 -826 5753 50 10 1 chr9 21931992 21932714 -95929913 - L1PA7 LINE L1 -11 6143 5416 629 56 34 0 chr9 21932714 21932786 -95929841 + L1P LINE L1 5346 5423 -749 191 313 26 70 chr9 21933268 21933383 -95929244 + L2 LINE L2 3136 3245 -27 520 171 45 96 chr9 21934896 21935095 -95927532 - MER5A DNA MER1_type 0 189 1 213 284 68 26 chr9 21935163 21935258 -95927369 - MER5A DNA MER1_type -79 110 1 14638 119 30 12 chr9 21936095 21936448 -95926179 + Tigger1 DNA MER2_type 108 453 -1965 2169 118 0 0 chr9 21936448 21936737 -95925890 - AluSq SINE Alu -19 294 6 14638 119 30 12 chr9 21936737 21938324 -95924303 + Tigger1 DNA MER2_type 453 2097 -321 2162 70 32 64 chr9 21938324 21938638 -95923989 - AluY SINE Alu -7 304 1 14638 119 30 12 chr9 21938638 21938965 -95923662 + Tigger1 DNA MER2_type 2097 2417 -1 1878 164 0 3 chr9 21940031 21940323 -95922304 + AluJo SINE Alu 1 291 -21 1557 203 54 41 chr9 21940744 21941106 -95921521 + MLT1A2 LTR MaLR 12 374 0 264 269 168 34 chr9 21941128 21941247 -95921380 - MIR3 SINE MIR -66 142 8 2488 65 0 3 chr9 21941526 21941836 -95920791 - AluY SINE Alu 0 311 3 192 405 33 8 chr9 21942559 21942680 -95919947 - L3b LINE CR1 -282 1301 1178 235 201 13 141 chr9 21944032 21944181 -95918446 + Charlie7 DNA MER1_type 2433 2562 -50 23 68 0 0 chr9 21947557 21947601 -95915026 + AT_rich Low_complexity Low_complexity 1 44 0 624 293 74 33 chr9 21949320 21949562 -95913065 + MIR SINE MIR 11 262 0 21 36 0 0 chr9 21949574 21949602 -95913025 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr9 21950984 21951009 -95911618 + AT_rich Low_complexity Low_complexity 1 25 0 225 169 60 60 chr9 21951356 21951439 -95911188 + L1ME4a LINE L1 6014 6096 -25 1042 220 13 47 chr9 21953024 21953256 -95909371 - MER58A DNA MER1_type 0 224 1 2213 92 0 0 chr9 21954237 21954530 -95908097 + AluY SINE Alu 1 293 -18 1968 208 13 31 chr9 21954963 21955420 -95907207 + L1MB8 LINE L1 5662 6110 -68 1523 199 3 18 chr9 21955425 21955707 -95906920 + AluJo SINE Alu 3 280 -32 206 167 0 48 chr9 21955708 21955750 -95906877 + GA-rich Low_complexity Low_complexity 1 40 0 312 354 0 10 chr9 21956418 21956517 -95906110 - L2 LINE L2 -21 3251 3154 649 226 0 0 chr9 21956762 21956877 -95905750 + FLAM_A SINE Alu 1 115 -18 514 148 33 66 chr9 21956904 21957026 -95905601 - L1ME3 LINE L1 -6 6156 6039 628 275 175 30 chr9 21957422 21958604 -95904023 + L1ME LINE L1 4272 5648 -514 686 261 27 21 chr9 21958612 21958800 -95903827 + MER5A DNA MER1_type 1 189 0 480 222 7 85 chr9 21958902 21959055 -95903572 - MER112 DNA MER1_type -119 141 1 21 0 0 0 chr9 21959677 21959698 -95902929 + AT_rich Low_complexity Low_complexity 1 21 0 313 206 10 98 chr9 21960244 21960346 -95902281 + L2 LINE L2 3221 3313 0 218 309 179 0 chr9 21960346 21960430 -95902197 - L2 LINE L2 -17 3296 3198 901 188 152 0 chr9 21960563 21960813 -95901814 + L1MC4 LINE L1 6801 7088 -954 2177 210 98 37 chr9 21960816 21961237 -95901390 + L1MC4 LINE L1 7241 7714 -328 2200 109 0 26 chr9 21961237 21961550 -95901077 + AluSc SINE Alu 1 305 -4 2177 210 98 37 chr9 21961550 21961753 -95900874 + L1MC4 LINE L1 7714 7903 -139 838 152 0 0 chr9 21962614 21962746 -95899881 - FLAM_A SINE Alu 0 133 2 228 325 25 0 chr9 21964119 21964199 -95898428 + MIR3 SINE MIR 118 199 -9 612 292 32 9 chr9 21964297 21964513 -95898114 - MIR SINE MIR -37 225 5 200 267 13 53 chr9 21964851 21964926 -95897701 - L2 LINE L2 -1115 2199 2128 312 347 25 0 chr9 21965670 21965791 -95896836 + MER91A DNA MER1_type 2 125 -71 1406 175 48 26 chr9 21965826 21965989 -95896638 - AluJo SINE Alu -22 290 117 249 33 0 0 chr9 21965989 21966019 -95896608 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 1406 175 48 26 chr9 21966019 21966123 -95896504 - AluJo SINE Alu -195 117 17 1943 151 3 6 chr9 21966477 21966788 -95895839 + AluSx SINE Alu 1 310 -2 979 277 92 9 chr9 21969504 21969840 -95892787 + L1MC/D LINE L1 5352 5715 -2093 354 169 0 0 chr9 21970494 21970559 -95892068 + GA-rich Low_complexity Low_complexity 2 66 0 252 336 39 10 chr9 21971211 21971315 -95891312 - MIR SINE MIR -91 171 65 34 55 0 0 chr9 21971869 21971924 -95890703 + AT_rich Low_complexity Low_complexity 1 55 0 1981 151 3 0 chr9 21971995 21972294 -95890333 + AluJb SINE Alu 1 300 -12 838 207 56 61 chr9 21972297 21972510 -95890117 + AluJb SINE Alu 84 295 -17 21 0 0 0 chr9 21974986 21975007 -95887620 + AT_rich Low_complexity Low_complexity 1 21 0 204 281 53 0 chr9 21975347 21975404 -95887223 - L2 LINE L2 -3 3310 3251 347 274 18 53 chr9 21975682 21975795 -95886832 + MIR SINE MIR 32 140 -122 774 251 18 6 chr9 21977172 21977343 -95885284 + MER5A DNA MER1_type 17 189 0 242 295 0 0 chr9 21978912 21978973 -95883654 - MARNA DNA Mariner -348 238 178 505 163 0 31 chr9 21980256 21980354 -95882273 - FRAM SINE Alu -8 168 74 29 0 0 0 chr9 21981770 21981799 -95880828 + AT_rich Low_complexity Low_complexity 1 29 0 218 280 80 30 chr9 21981816 21981916 -95880711 + MIR3 SINE MIR 81 185 -23 378 275 55 0 chr9 21982525 21982616 -95880011 + L2 LINE L2 3156 3251 -21 354 315 75 7 chr9 21982835 21982981 -95879646 + MIR3 SINE MIR 10 165 -43 218 195 24 0 chr9 21983022 21983063 -95879564 + GA-rich Low_complexity Low_complexity 5 46 0 261 314 25 50 chr9 21983736 21983857 -95878770 + MIR3 SINE MIR 15 132 -76 346 217 0 54 chr9 21985679 21985773 -95876854 - MER2 DNA MER2_type -152 87 1 1439 187 85 36 chr9 21986341 21986765 -95875862 + LTR54 LTR ERV1 1 510 0 1703 144 31 24 chr9 21987441 21987732 -95874895 - AluJo SINE Alu -19 293 1 264 269 74 57 chr9 21987811 21987898 -95874729 - MER104 DNA Tc2 -1718 180 96 2392 74 0 13 chr9 21987898 21988210 -95874417 - AluY SINE Alu -3 308 1 264 269 74 57 chr9 21988210 21988297 -95874330 - MER104 DNA Tc2 -1802 96 3 213 389 71 0 chr9 21988880 21989006 -95873621 + L2 LINE L2 3137 3271 -1 2302 103 3 0 chr9 21989176 21989488 -95873139 - AluSq SINE Alu 0 313 1 219 69 0 0 chr9 21989945 21989974 -95872653 + (TG)n Simple_repeat Simple_repeat 1 29 0 225 312 85 7 chr9 21990555 21990696 -95871931 + L1M4 LINE L1 4457 4608 -1538 21 0 0 0 chr9 21992256 21992277 -95870350 + AT_rich Low_complexity Low_complexity 1 21 0 1088 220 4 4 chr9 21992351 21992592 -95870035 + L1MB3 LINE L1 5941 6181 -2 1829 220 95 52 chr9 21994337 21994897 -95867730 + MLT1E2 LTR MaLR 3 587 -38 246 370 68 52 chr9 21996344 21996948 -95865679 + L2 LINE L2 2659 3270 -2 344 366 147 35 chr9 21997398 21998436 -95864191 + L2 LINE L2 2005 3145 -127 720 258 30 5 chr9 21998505 21998703 -95863924 + L1MB1 LINE L1 5539 5741 -380 2392 97 62 3 chr9 21999824 22000176 -95862451 + THE1C LTR MaLR 1 373 -2 1269 179 20 77 chr9 22000363 22000660 -95861967 + L1MB1 LINE L1 5878 6157 -11 1900 149 7 7 chr9 22000910 22001206 -95861421 + AluJb SINE Alu 1 296 -16 243 218 0 0 chr9 22001864 22001919 -95860708 + (TG)n Simple_repeat Simple_repeat 1 55 0 741 189 37 20 chr9 22002467 22002678 -95859949 + L1M4 LINE L1 5313 5527 -634 181 297 40 27 chr9 22002888 22002962 -95859665 + MIR SINE MIR 9 83 -179 565 274 91 11 chr9 22003051 22003226 -95859401 - MER5A DNA MER1_type 0 189 1 624 266 40 17 chr9 22003347 22003524 -95859103 - MIR SINE MIR -1 261 81 2323 93 0 22 chr9 22003559 22003870 -95858757 - AluSx SINE Alu -8 304 1 2433 81 3 3 chr9 22004870 22005180 -95857447 - AluSp SINE Alu -3 310 1 202 393 25 8 chr9 22005985 22006107 -95856520 + MIR3 SINE MIR 41 164 -44 1420 201 113 9 chr9 22006107 22006426 -95856201 + MLT1A1 LTR MaLR 2 353 -12 28 61 0 0 chr9 22009196 22009245 -95853382 + AT_rich Low_complexity Low_complexity 1 49 0 25 0 0 0 chr9 22011626 22011651 -95850976 + AT_rich Low_complexity Low_complexity 1 25 0 29 84 0 0 chr9 22011801 22011872 -95850755 + AT_rich Low_complexity Low_complexity 1 71 0 338 278 41 125 chr9 22011982 22012302 -95850325 - L2 LINE L2 -30 3283 2991 23 54 0 0 chr9 22013156 22013193 -95849434 + AT_rich Low_complexity Low_complexity 1 37 0 1201 167 21 13 chr9 22013740 22013974 -95848653 - MER46A DNA MER2_type 0 236 1 695 177 8 23 chr9 22014779 22014909 -95847718 - FLAM_A SINE Alu -5 128 1 2305 104 0 0 chr9 22014928 22015237 -95847390 + AluSc SINE Alu 1 309 0 259 330 239 6 chr9 22015612 22015788 -95846839 + MIR SINE MIR 8 224 -38 263 299 167 14 chr9 22016246 22016390 -95846237 + MIR3 SINE MIR 35 200 -8 818 130 22 58 chr9 22017932 22018070 -95844557 - AluSq/x SINE Alu -179 133 1 482 266 65 19 chr9 22018210 22018364 -95844263 + MER5A DNA MER1_type 29 189 0 21 0 0 0 chr9 22018780 22018801 -95843826 + AT_rich Low_complexity Low_complexity 1 21 0 290 309 24 71 chr9 22019496 22019664 -95842963 + MIR3 SINE MIR 16 175 -33 357 340 95 57 chr9 22020049 22020364 -95842263 - L2 LINE L2 -2 3270 2944 25 31 0 0 chr9 22020373 22020405 -95842222 + AT_rich Low_complexity Low_complexity 1 32 0 1009 134 17 6 chr9 22020405 22020584 -95842043 - L1MA4A LINE L1 -1 6302 6122 22 56 0 0 chr9 22021660 22021696 -95840931 + AT_rich Low_complexity Low_complexity 1 36 0 984 111 0 0 chr9 22025546 22025726 -95836901 + (TA)n Simple_repeat Simple_repeat 1 180 0 917 123 0 0 chr9 22025786 22025908 -95836719 + AluSq/x SINE Alu 1 122 -190 340 374 72 0 chr9 22026171 22026310 -95836317 + L2 LINE L2 3122 3270 -2 216 0 0 0 chr9 22026934 22026958 -95835669 + (A)n Simple_repeat Simple_repeat 1 24 0 794 232 127 9 chr9 22028687 22028907 -95833720 - MIR SINE MIR -3 259 14 290 167 0 0 chr9 22029033 22029081 -95833546 - Charlie5 DNA MER1_type -304 2308 2261 21 36 0 0 chr9 22029143 22029171 -95833456 + AT_rich Low_complexity Low_complexity 1 28 0 11692 132 36 19 chr9 22029262 22029837 -95832790 - Tigger1 DNA MER2_type 0 2418 1854 1734 136 176 24 chr9 22029837 22030206 -95832421 - MSTA LTR MaLR -3 425 1 9193 126 22 59 chr9 22030206 22031844 -95830783 - MSTA-int LTR MaLR 0 1580 3 1613 175 73 17 chr9 22031846 22032201 -95830426 - THE1C LTR MaLR 0 375 1 11692 132 36 19 chr9 22032201 22032725 -95829902 - Tigger1 DNA MER2_type -564 1854 1341 2726 20 0 0 chr9 22032725 22033024 -95829603 - AluYb8 SINE Alu -7 311 13 11692 132 36 19 chr9 22033024 22033868 -95828759 - Tigger1 DNA MER2_type -1077 1341 436 501 175 21 10 chr9 22033877 22033974 -95828653 - Tigger1 DNA MER2_type -2134 284 187 780 266 0 0 chr9 22033974 22034151 -95828476 + FRAM SINE Alu 1 169 -7 545 115 9 26 chr9 22034151 22034264 -95828363 + (GGA)n Simple_repeat Simple_repeat 1 111 0 1057 190 0 0 chr9 22034264 22034443 -95828184 - Tigger1 DNA MER2_type -2232 186 8 1392 257 125 11 chr9 22034459 22034906 -95827721 + L1MB2 LINE L1 4758 5255 -891 3757 189 30 42 chr9 22034910 22035292 -95827335 + L1MB2 LINE L1 5330 5715 -456 1566 173 19 38 chr9 22035292 22035610 -95827017 + AluJo SINE Alu 1 312 0 3757 189 30 42 chr9 22035610 22036079 -95826548 + L1MB2 LINE L1 5715 6171 0 1262 206 33 49 chr9 22036225 22036531 -95826096 + AluJo SINE Alu 3 303 -9 237 278 14 0 chr9 22036705 22036777 -95825850 - MER3 DNA MER1_type 0 2624 2552 1278 195 0 27 chr9 22036792 22037049 -95825578 + AluJo SINE Alu 50 299 -13 2203 112 6 56 chr9 22037072 22037429 -95825198 + LTR32 LTR ERVL 14 352 -119 935 162 13 0 chr9 22037428 22037582 -95825045 + LTR32 LTR ERVL 316 471 0 * 887 159 0 0 chr9 22037688 22037820 -95824807 - AluJb SINE Alu -180 132 1 2317 93 3 3 chr9 22037848 22038149 -95824478 + AluSq SINE Alu 1 301 -12 1501 224 0 3 chr9 22038164 22038458 -95824169 + AluJo SINE Alu 10 302 -10 910 146 12 12 chr9 22038461 22038625 -95824002 - MER3 DNA MER1_type 0 2402 2239 525 183 67 0 chr9 22038632 22038736 -95823891 - MER3 DNA MER1_type -47 162 52 1651 168 24 3 chr9 22039310 22039601 -95823026 - AluJb SINE Alu -15 297 1 762 239 52 20 chr9 22039921 22040172 -95822455 - MIR SINE MIR 0 262 4 1326 176 134 8 chr9 22040924 22041185 -95821442 - AluJb SINE Alu -18 294 1 1774 169 3 29 chr9 22041236 22041550 -95821077 - AluJo SINE Alu -6 306 1 228 67 0 0 chr9 22042995 22043025 -95819602 + (TTG)n Simple_repeat Simple_repeat 1 30 0 216 250 156 0 chr9 22043887 22043951 -95818676 - L2 LINE L2 -37 3276 3203 21 36 0 0 chr9 22045462 22045490 -95817137 + AT_rich Low_complexity Low_complexity 1 28 0 665 153 76 17 chr9 22045813 22045931 -95816696 - FLAM_C SINE Alu -6 127 3 646 235 126 36 chr9 22046311 22046588 -95816039 + Charlie2 DNA MER1_type 1884 2185 -677 802 221 117 53 chr9 22046651 22046889 -95815738 + Charlie2 DNA MER1_type 2268 2489 -373 2040 117 0 0 chr9 22046889 22047193 -95815434 + AluSg SINE Alu 1 304 0 802 221 117 53 chr9 22047193 22047424 -95815203 + Charlie2 DNA MER1_type 2489 2768 -94 714 257 72 50 chr9 22047735 22047957 -95814670 + MIR SINE MIR 2 228 -34 3617 73 2 2 chr9 22048596 22049074 -95813553 + L1PA13 LINE L1 5686 6163 0 332 341 35 18 chr9 22049359 22049529 -95813098 - L2 LINE L2 -211 3061 2889 23 0 0 0 chr9 22049719 22049742 -95812885 + AT_rich Low_complexity Low_complexity 1 23 0 2010 145 3 7 chr9 22049766 22050076 -95812551 - AluSx SINE Alu -3 309 1 309 51 0 0 chr9 22050152 22050191 -95812436 + (TG)n Simple_repeat Simple_repeat 2 40 0 28 29 0 0 chr9 22050990 22051025 -95811602 + AT_rich Low_complexity Low_complexity 1 35 0 283 200 133 0 chr9 22051400 22051490 -95811137 + L1MC1 LINE L1 5174 5275 -871 923 154 0 7 chr9 22051527 22051697 -95810930 + AluJb SINE Alu 144 312 0 5180 119 28 41 chr9 22051705 22052393 -95810234 + L1MC1 LINE L1 5262 5958 -2037 1833 162 3 7 chr9 22052393 22052689 -95809938 + AluJb SINE Alu 1 295 -17 5180 119 28 41 chr9 22052689 22053006 -95809621 + L1MC1 LINE L1 5958 7984 -11 290 175 35 0 chr9 22053253 22053310 -95809317 - FLAM SINE Alu -21 112 54 24 32 0 0 chr9 22053319 22053350 -95809277 + AT_rich Low_complexity Low_complexity 1 31 0 242 314 12 17 chr9 22053722 22053828 -95808799 + GA-rich Low_complexity Low_complexity 4 174 0 180 0 0 0 chr9 22053832 22053852 -95808775 + (A)n Simple_repeat Simple_repeat 1 20 0 2100 123 10 0 chr9 22053920 22054220 -95808407 + AluSx SINE Alu 1 303 -9 1842 240 132 51 chr9 22054913 22055739 -95806888 - L1ME3A LINE L1 -24 6146 5254 188 319 167 22 chr9 22056183 22056321 -95806306 - MIR3 SINE MIR -46 162 5 351 303 7 13 chr9 22056678 22056830 -95805797 - Tigger8 DNA MER2_type -83 583 433 593 259 127 95 chr9 22056930 22057227 -95805400 - Tigger8 DNA MER2_type -209 457 140 1627 193 103 44 chr9 22057227 22057704 -95804923 - MLT1D LTR MaLR 0 505 1 593 259 127 95 chr9 22057704 22057847 -95804780 - Tigger8 DNA MER2_type -526 140 3 522 280 34 23 chr9 22057889 22058064 -95804563 - MER5B DNA MER1_type 0 178 2 600 160 56 24 chr9 22058565 22058690 -95803937 - FLAM_C SINE Alu 0 133 5 1354 156 9 9 chr9 22059543 22059761 -95802866 - AluSx SINE Alu -93 219 2 2076 131 0 3 chr9 22059970 22060267 -95802360 - AluSx SINE Alu -16 296 1 22 0 0 0 chr9 22060589 22060611 -95802016 + AT_rich Low_complexity Low_complexity 1 22 0 23 68 0 0 chr9 22060701 22060745 -95801882 + AT_rich Low_complexity Low_complexity 1 44 0 331 244 124 62 chr9 22061086 22061360 -95801267 - L1ME4a LINE L1 -15 6106 5816 24 32 0 0 chr9 22062194 22062225 -95800402 + AT_rich Low_complexity Low_complexity 1 31 0 216 0 0 0 chr9 22062230 22062254 -95800373 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 3113 128 47 4 chr9 22062290 22062805 -95799822 + L1MA9 LINE L1 5545 6081 -231 470 175 78 0 chr9 22062807 22062910 -95799717 + L1MA9 LINE L1 6180 6290 -22 2120 109 7 13 chr9 22063438 22063775 -95798852 + AluY SINE Alu 1 311 0 1981 119 14 57 chr9 22063862 22064214 -95798413 + MER1B DNA MER1_type 1 337 0 306 0 0 0 chr9 22065005 22065039 -95797588 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 22 0 0 0 chr9 22067986 22068008 -95794619 + AT_rich Low_complexity Low_complexity 1 22 0 184 308 178 9 chr9 22068017 22068124 -95794503 + MIR SINE MIR 66 190 -72 360 261 139 57 chr9 22068126 22068366 -95794261 + L1MC4a LINE L1 5084 5342 -804 450 292 71 56 chr9 22068367 22068453 -95794174 + L1MC4a LINE L1 5355 5438 -683 2332 96 0 3 chr9 22068453 22068755 -95793872 + AluSg SINE Alu 2 302 -8 450 292 71 56 chr9 22068755 22069181 -95793446 + L1MC4a LINE L1 5438 5824 -297 32 43 0 0 chr9 22069210 22069256 -95793371 + AT_rich Low_complexity Low_complexity 1 46 0 502 146 104 0 chr9 22069695 22069791 -95792836 + FAM SINE Alu 38 143 -42 266 203 0 14 chr9 22069829 22069903 -95792724 + (CA)n Simple_repeat Simple_repeat 1 73 0 315 235 12 24 chr9 22069988 22070073 -95792554 - MER117 DNA MER1_type -46 151 68 648 217 174 0 chr9 22070498 22070659 -95791968 + MER5A DNA MER1_type 1 189 0 4540 167 61 6 chr9 22071137 22071988 -95790639 + MER54A LTR ERVL 1 898 -3 1349 197 73 15 chr9 22072068 22072535 -95790092 - HERVL74 LTR ERVL -544 5141 4589 519 207 43 17 chr9 22072531 22072647 -95789980 - HERVL74 LTR ERVL -1670 4015 3897 * 1045 220 9 31 chr9 22072642 22073061 -95789566 - HERVL74 LTR ERVL -2034 3651 2983 2345 85 0 3 chr9 22073061 22073367 -95789260 - AluSg SINE Alu -5 305 1 1045 220 9 31 chr9 22073367 22073489 -95789138 - HERVL74 LTR ERVL -2702 2983 2860 228 209 0 60 chr9 22073576 22073643 -95788984 - MER107 DNA MER1_type -64 133 71 2789 204 55 101 chr9 22075403 22075547 -95787080 + L1MC4a LINE L1 6611 6760 -1048 333 102 0 0 chr9 22075547 22075596 -95787031 + AluSc SINE Alu 250 298 -1 2789 204 55 101 chr9 22075596 22075676 -95786951 + L1MC4a LINE L1 6760 6842 -966 2050 135 3 7 chr9 22075676 22075980 -95786647 + AluSq SINE Alu 1 303 -10 2789 204 55 101 chr9 22075980 22076179 -95786448 + L1MC4a LINE L1 6842 7049 -759 2108 83 3 28 chr9 22076179 22076496 -95786131 + AluSx SINE Alu 1 310 0 2789 204 55 101 chr9 22076496 22077057 -95785570 + L1MC4a LINE L1 7049 7590 -218 969 191 43 47 chr9 22077265 22077521 -95785106 + L1MD3 LINE L1 7737 7991 -4 2762 82 0 0 chr9 22077670 22078035 -95784592 + L1P4 LINE L1 5344 5708 -460 453 219 188 31 chr9 22079244 22079404 -95783223 + MER5A DNA MER1_type 4 188 -1 487 192 54 69 chr9 22080614 22080744 -95781883 + MLT2E LTR ERVL 1 128 -500 483 265 22 7 chr9 22080944 22081080 -95781547 + MLT2E LTR ERVL 488 625 -3 494 191 52 15 chr9 22081288 22081306 -95781321 - L1MA10 LINE L1 -13 6321 6304 2873 216 46 60 chr9 22081306 22081952 -95780675 - L1ME1 LINE L1 -27 6139 5486 2042 131 3 22 chr9 22081952 22082266 -95780361 + AluSx SINE Alu 5 312 0 2873 216 46 60 chr9 22082266 22082532 -95780095 - L1ME1 LINE L1 -680 5486 5253 1508 76 49 18 chr9 22082532 22082755 -95779872 - MER30 DNA MER1_type 0 230 1 2873 216 46 60 chr9 22082755 22082851 -95779776 - L1ME1 LINE L1 -913 5253 5157 1835 197 55 20 chr9 22082899 22083350 -95779277 - MLT1C LTR MaLR 0 467 1 584 163 0 0 chr9 22083397 22083489 -95779138 + L1MC1 LINE L1 6224 6315 -18 681 198 0 0 chr9 22083802 22083918 -95778709 + FLAM_A SINE Alu 11 126 -16 956 265 159 51 chr9 22084044 22084584 -95778043 - MLT1G1 LTR MaLR 0 555 1 183 129 0 0 chr9 22085014 22085045 -95777582 + (CA)n Simple_repeat Simple_repeat 2 32 0 290 355 32 79 chr9 22085275 22085464 -95777163 - L2 LINE L2 -11 3261 3082 2851 22 0 0 chr9 22085478 22085795 -95776832 + AluYb8 SINE Alu 1 317 -1 2144 125 0 0 chr9 22085807 22086102 -95776525 + AluSq SINE Alu 1 295 -18 6331 144 22 27 chr9 22086445 22086467 -95776160 + L1MA8 LINE L1 4208 4229 -2062 1919 157 58 0 chr9 22086467 22086792 -95775835 - MER2 DNA MER2_type 0 344 1 6331 144 22 27 chr9 22086792 22088359 -95774268 + L1MA8 LINE L1 4229 5784 -507 207 0 0 0 chr9 22088359 22088382 -95774245 + (TG)n Simple_repeat Simple_repeat 2 24 0 6331 144 22 27 chr9 22088382 22088885 -95773742 + L1MA8 LINE L1 5784 6288 -3 1824 116 116 0 chr9 22090072 22090349 -95772278 - AluSx SINE Alu -3 309 1 2233 131 29 39 chr9 22091562 22091696 -95770931 + L1MA7 LINE L1 5182 5316 -975 1931 62 0 0 chr9 22091696 22091938 -95770689 - L1PA7 LINE L1 -6 6148 5907 2233 131 29 39 chr9 22091938 22092738 -95769889 + L1MA7 LINE L1 5316 6276 -15 23 24 0 24 chr9 22092738 22092761 -95769866 + AT_rich Low_complexity Low_complexity 1 24 -16 2039 139 0 0 chr9 22092761 22093049 -95769578 + AluSx SINE Alu 1 288 -24 23 24 0 24 chr9 22093049 22093066 -95769561 + AT_rich Low_complexity Low_complexity 24 40 0 1846 167 13 3 chr9 22093376 22093729 -95768898 - AluJb SINE Alu 0 356 1 368 218 81 40 chr9 22094033 22094157 -95768470 - MIR SINE MIR -43 219 91 728 230 43 59 chr9 22094281 22094468 -95768159 - MER5A DNA MER1_type -5 184 1 5855 137 25 21 chr9 22094638 22095617 -95767010 - Tigger1 DNA MER2_type 0 2418 1436 396 90 0 45 chr9 22095620 22095687 -95766940 + Tigger1 DNA MER2_type 2175 2238 -180 8927 118 56 10 chr9 22095746 22097109 -95765518 - Tigger1 DNA MER2_type -942 1476 44 683 225 0 0 chr9 22097109 22097229 -95765398 + FLAM_A SINE Alu 1 120 -13 8927 118 56 10 chr9 22097229 22097276 -95765351 - Tigger1 DNA MER2_type -2374 44 1 752 185 15 0 chr9 22098645 22098775 -95763852 + FLAM_C SINE Alu 1 132 -1 601 202 0 8 chr9 22098830 22098954 -95763673 + Charlie5 DNA MER1_type 1 123 -2489 937 186 54 18 chr9 22098959 22099264 -95763363 + Charlie5 DNA MER1_type 2245 2624 0 1230 183 29 77 chr9 22099329 22099641 -95762986 + AluJo SINE Alu 1 297 -15 33 0 0 0 chr9 22102228 22102261 -95760366 + AT_rich Low_complexity Low_complexity 1 33 0 5478 149 27 33 chr9 22102295 22102787 -95759840 - L1MC2 LINE L1 -1 6343 5850 2526 95 11 20 chr9 22102787 22103145 -95759482 - THE1A LTR MaLR 0 355 1 11229 92 23 3 chr9 22103145 22104693 -95757934 - THE1A-int LTR MaLR 0 1580 1 2543 91 3 22 chr9 22104693 22105055 -95757572 - THE1A LTR MaLR 0 355 1 5478 149 27 33 chr9 22105055 22105305 -95757322 - L1MC2 LINE L1 -492 5852 5602 932 194 52 157 chr9 22105305 22105707 -95756920 - MLT1A1 LTR MaLR -4 361 2 5478 149 27 33 chr9 22105707 22105969 -95756658 - L1MC2 LINE L1 -742 5602 5342 210 211 53 79 chr9 22106000 22106076 -95756551 + MER5A DNA MER1_type 14 87 -102 1619 191 13 20 chr9 22106285 22106583 -95756044 + AluJo SINE Alu 1 296 -16 231 319 22 95 chr9 22107548 22107721 -95754906 - MIR3 SINE MIR -47 161 33 5649 130 263 0 chr9 22107866 22108818 -95753809 - L1PA3 LINE L1 -768 5378 4177 6729 20 1 0 chr9 22108818 22109597 -95753030 + L1PA3 LINE L1 5372 6155 0 2158 92 0 0 chr9 22109713 22109986 -95752641 - AluSg SINE Alu -15 295 23 1571 148 38 98 chr9 22110329 22110728 -95751899 + THE1C LTR MaLR 1 375 0 1380 218 0 45 chr9 22110737 22111049 -95751578 - AluJo SINE Alu -14 298 1 212 351 33 19 chr9 22111273 22111385 -95751242 - MER5A DNA MER1_type -18 160 48 559 160 43 0 chr9 22111882 22111976 -95750651 + FLAM_A SINE Alu 1 98 -44 27 0 0 0 chr9 22111977 22112004 -95750623 + AT_rich Low_complexity Low_complexity 1 27 0 1870 130 77 64 chr9 22112275 22112652 -95749975 - MLT1B LTR MaLR -8 382 1 6088 100 34 18 chr9 22113280 22113941 -95748686 + MER41B-int LTR ERV1 5020 5702 -244 2214 114 3 3 chr9 22113941 22114240 -95748387 - AluSx SINE Alu -13 299 1 6088 100 34 18 chr9 22114240 22114490 -95748137 + MER41B-int LTR ERV1 5702 5946 0 3622 126 0 18 chr9 22114490 22115047 -95747580 + MER41B LTR ERV1 1 547 -88 1573 181 0 44 chr9 22115075 22115395 -95747232 + AluJb SINE Alu 2 307 -5 31 26 0 0 chr9 22115412 22115450 -95747177 + AT_rich Low_complexity Low_complexity 1 38 0 698 186 83 6 chr9 22115872 22116028 -95746599 + MER3 DNA MER1_type 40 207 -2 2032 117 3 24 chr9 22116407 22116705 -95745922 + AluSx SINE Alu 1 292 -20 1721 173 43 23 chr9 22116768 22117167 -95745460 - L1M4 LINE L1 -1469 4677 4271 224 276 41 41 chr9 22117167 22117265 -95745362 + MIR SINE MIR 141 238 -24 2300 96 0 3 chr9 22119024 22119326 -95743301 + AluSc SINE Alu 1 301 -8 247 273 0 30 chr9 22119627 22119693 -95742934 + MIR3 SINE MIR 12 75 -133 352 227 209 0 chr9 22119700 22119810 -95742817 + MER94 DNA DNA 2 134 0 209 207 57 0 chr9 22119825 22119885 -95742742 + MIR SINE MIR 87 150 -58 213 65 0 0 chr9 22120125 22120156 -95742471 + (A)n Simple_repeat Simple_repeat 1 31 0 349 324 90 0 chr9 22120297 22120408 -95742219 + L2 LINE L2 3150 3270 -2 374 56 0 19 chr9 22122767 22122821 -95739806 + (CA)n Simple_repeat Simple_repeat 2 54 0 26 0 0 0 chr9 22125385 22125411 -95737216 + AT_rich Low_complexity Low_complexity 1 26 0 22 70 0 0 chr9 22127240 22127283 -95735344 + AT_rich Low_complexity Low_complexity 1 43 0 259 259 71 62 chr9 22132204 22132316 -95730311 + MIR3 SINE MIR 75 187 -21 311 297 117 58 chr9 22132596 22133185 -95729442 + L1ME3 LINE L1 5273 5896 -266 676 145 26 0 chr9 22133196 22133313 -95729314 + L1MB7 LINE L1 6046 6165 -19 22 0 0 0 chr9 22133597 22133619 -95729008 + AT_rich Low_complexity Low_complexity 1 22 0 584 298 24 0 chr9 22133791 22133999 -95728628 + L1ME LINE L1 5533 5745 -376 2254 87 3 0 chr9 22134122 22134408 -95728219 + AluSq SINE Alu 1 287 -26 273 128 0 0 chr9 22134415 22134462 -95728165 + (GGGA)n Simple_repeat Simple_repeat 4 50 0 202 102 0 122 chr9 22134465 22134514 -95728113 + L2 LINE L2 3271 3313 0 1519 178 3 60 chr9 22135070 22135401 -95727226 + AluJb SINE Alu 1 312 0 361 195 138 98 chr9 22135573 22135640 -95726987 - MIR SINE MIR 0 262 199 1561 209 79 47 chr9 22135640 22136147 -95726480 + Charlie1b DNA MER1_type 1 523 0 361 195 138 98 chr9 22136147 22136253 -95726374 - MIR SINE MIR -63 199 82 379 258 99 85 chr9 22136429 22137007 -95725620 - L1MC4a LINE L1 0 6121 5517 324 0 0 0 chr9 22140258 22140294 -95722333 + (CA)n Simple_repeat Simple_repeat 2 37 0 24 77 0 0 chr9 22140475 22140527 -95722100 + GC_rich Low_complexity Low_complexity 1 52 0 22 35 0 0 chr9 22140545 22140574 -95722053 + GC_rich Low_complexity Low_complexity 1 29 0 24 67 0 0 chr9 22141013 22141058 -95721569 + GC_rich Low_complexity Low_complexity 1 45 0 201 121 0 0 chr9 22141904 22141937 -95720690 + (TG)n Simple_repeat Simple_repeat 1 33 0 262 287 0 21 chr9 22141978 22142018 -95720609 + G-rich Low_complexity Low_complexity 1 40 -52 234 116 0 0 chr9 22142018 22142061 -95720566 + (TG)n Simple_repeat Simple_repeat 1 43 0 262 287 0 21 chr9 22142061 22142114 -95720513 + G-rich Low_complexity Low_complexity 40 92 0 195 42 0 0 chr9 22142411 22142435 -95720192 + (CTCG)n Simple_repeat Simple_repeat 3 26 0 189 0 0 0 chr9 22142460 22142481 -95720146 + (CAG)n Simple_repeat Simple_repeat 2 22 0 370 294 13 33 chr9 22143865 22144018 -95718609 + CT-rich Low_complexity Low_complexity 1 150 0 215 214 24 0 chr9 22145506 22145548 -95717079 + (CCA)n Simple_repeat Simple_repeat 1 43 0 22 0 0 0 chr9 22147096 22147118 -95715509 + AT_rich Low_complexity Low_complexity 1 22 0 2384 95 0 0 chr9 22147226 22147521 -95715106 + AluSc SINE Alu 1 295 -14 1970 226 77 105 chr9 22148608 22149619 -95713008 + L1MC4 LINE L1 6955 7937 -105 1608 174 3 30 chr9 22149654 22149959 -95712668 - AluJo SINE Alu -10 302 6 215 31 31 0 chr9 22150040 22150072 -95712555 + (TATATG)n Simple_repeat Simple_repeat 6 38 0 180 111 0 0 chr9 22150192 22150219 -95712408 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 717 150 0 0 chr9 22152081 22152194 -95710433 + FLAM_A SINE Alu 25 137 -5 440 321 38 34 chr9 22153655 22153892 -95708735 + MER102a DNA MER1_type 73 310 -20 1056 207 61 8 chr9 22153966 22154259 -95708368 + MER58B DNA MER1_type 5 326 -15 * 2495 146 86 2 chr9 22154252 22154696 -95707931 - MER31A LTR ERV1 -4 481 1 247 184 58 69 chr9 22154696 22154730 -95707897 + MER58C DNA MER1_type 180 212 -3 1163 180 77 22 chr9 22154739 22154968 -95707659 - MER33 DNA MER1_type -2261 324 76 488 264 137 49 chr9 22154968 22155377 -95707250 + MER65A LTR ERV1 1 445 0 1163 180 77 22 chr9 22155377 22155466 -95707161 - MER33 DNA MER1_type -2509 76 1 523 292 218 16 chr9 22205963 22206395 -95656232 - L2 LINE L2 -817 2497 1979 434 381 104 12 chr9 22206459 22206882 -95655745 - L2 LINE L2 -2085 1229 768 234 384 0 0 chr9 22207165 22207251 -95655376 - L2 LINE L2 -2943 371 286 290 286 79 21 chr9 22207612 22207752 -95654875 + MER117 DNA MER1_type 9 156 -41 2577 233 74 100 chr9 22207812 22208184 -95654443 + L2 LINE L2 1533 1913 -1401 1533 181 22 4 chr9 22208184 22208461 -95654166 - AluJo SINE Alu -30 282 1 2577 233 74 100 chr9 22208461 22208560 -95654067 + L2 LINE L2 1913 2013 -1301 2176 126 0 0 chr9 22208560 22208854 -95653773 - AluSx SINE Alu -12 300 7 2577 233 74 100 chr9 22208854 22209095 -95653532 + L2 LINE L2 2013 2259 -1055 2327 89 3 0 chr9 22209095 22209397 -95653230 - AluY SINE Alu -8 303 1 1916 97 90 0 chr9 22209399 22209667 -95652960 - AluSx SINE Alu -20 292 1 2577 233 74 100 chr9 22209667 22210074 -95652553 + L2 LINE L2 2260 2627 -687 421 274 85 51 chr9 22210074 22210446 -95652181 - MLT1H LTR MaLR 0 549 125 209 217 87 0 chr9 22210874 22210920 -95651707 - MIR3 SINE MIR -21 187 138 663 291 104 33 chr9 22211151 22211515 -95651112 + Tigger8 DNA MER2_type 131 520 -146 185 257 27 14 chr9 22211785 22211859 -95650768 - MIR SINE MIR -3 259 185 282 56 0 0 chr9 22211876 22211912 -95650715 + (TTA)n Simple_repeat Simple_repeat 1 36 0 1709 173 0 4 chr9 22211915 22212186 -95650441 - AluJo SINE Alu -33 279 10 664 270 70 42 chr9 22212248 22212489 -95650138 + MIR SINE MIR 13 260 -2 483 281 111 6 chr9 22212475 22212646 -95649981 + MIR SINE MIR 57 245 -17 * 491 156 0 22 chr9 22212728 22212818 -95649809 + AluSg/x SINE Alu 215 302 -10 186 231 15 62 chr9 22213198 22213263 -95649364 - L2 LINE L2 -529 2785 2724 302 106 0 0 chr9 22213279 22213326 -95649301 - L1P4 LINE L1 -424 5739 5693 184 215 51 114 chr9 22213560 22213639 -95648988 - L2 LINE L2 -12 3260 3187 * 212 264 242 11 chr9 22213638 22213729 -95648898 - MIR SINE MIR -62 146 35 972 192 91 0 chr9 22214767 22214975 -95647652 + MIR SINE MIR 30 256 -6 363 272 103 60 chr9 22214985 22215217 -95647410 - L1MC5 LINE L1 -37 7924 7683 1426 227 3 0 chr9 22215718 22216026 -95646601 - AluJo SINE Alu -3 309 1 2382 202 64 21 chr9 22216225 22216833 -95645794 + L1MB8 LINE L1 5531 6164 -14 256 284 102 11 chr9 22217018 22217106 -95645521 + L2 LINE L2 3139 3234 -38 1496 201 10 10 chr9 22217572 22217861 -95644766 + AluJo SINE Alu 17 305 -7 906 36 0 0 chr9 22218519 22218629 -95643998 + L1PA3 LINE L1 6046 6155 0 375 354 32 32 chr9 22218661 22218819 -95643808 + MIR3 SINE MIR 14 171 -37 25 31 0 0 chr9 22221563 22221595 -95641032 + AT_rich Low_complexity Low_complexity 1 32 0 1193 163 93 4 chr9 22222006 22222358 -95640269 + L1MB7 LINE L1 5766 6179 -1 1534 244 258 18 chr9 22222577 22223320 -95639307 + L1MC4 LINE L1 7124 8034 -8 234 327 64 73 chr9 22224477 22224587 -95638040 + L2 LINE L2 3141 3249 -23 237 114 57 23 chr9 22224697 22224785 -95637842 + T-rich Low_complexity Low_complexity 2 92 0 235 317 134 18 chr9 22224827 22224991 -95637636 - LTR16C LTR ERVL -6 485 303 180 0 0 0 chr9 22226151 22226171 -95636456 + (T)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr9 22226319 22226340 -95636287 + AT_rich Low_complexity Low_complexity 1 21 0 2452 31 41 0 chr9 22226667 22226960 -95635667 + AluY SINE Alu 1 305 -6 265 226 0 0 chr9 22227093 22227155 -95635472 - AluJ/monomer SINE Alu -4 296 235 26 30 0 0 chr9 22227740 22227773 -95634854 + AT_rich Low_complexity Low_complexity 1 33 0 2221 103 0 10 chr9 22228327 22228627 -95634000 + AluSq SINE Alu 1 297 -16 870 200 170 0 chr9 22228926 22229156 -95633471 - L1MB7 LINE L1 0 6184 5916 29 60 0 0 chr9 22229470 22229520 -95633107 + AT_rich Low_complexity Low_complexity 1 50 0 489 114 0 0 chr9 22232446 22232516 -95630111 - AluS SINE Alu -15 296 227 32 26 0 0 chr9 22232560 22232599 -95630028 + AT_rich Low_complexity Low_complexity 1 39 0 546 248 22 93 chr9 22232704 22232982 -95629645 - LTR41 LTR ERVL -1 772 515 758 200 5 46 chr9 22233127 22233322 -95629305 - LTR41 LTR ERVL -586 187 1 189 321 185 0 chr9 22233696 22233777 -95628850 - MIR SINE MIR -10 252 157 224 266 83 18 chr9 22233807 22233916 -95628711 + MIR SINE MIR 70 185 -77 * 554 250 55 30 chr9 22233903 22234067 -95628560 - MIR SINE MIR -14 248 81 3575 171 22 38 chr9 22234081 22234864 -95627763 - L1MB8 LINE L1 0 6178 5409 330 365 48 0 chr9 22234864 22234990 -95627637 - MIR SINE MIR -104 158 27 225 65 0 0 chr9 22235943 22235974 -95626653 + (CAAA)n Simple_repeat Simple_repeat 3 33 0 319 335 45 29 chr9 22236348 22236658 -95625969 - L2 LINE L2 -1230 2084 1770 330 214 44 19 chr9 22236760 22236919 -95625708 + (TA)n Simple_repeat Simple_repeat 1 163 0 229 263 211 0 chr9 22237106 22237201 -95625426 - L2 LINE L2 -9 3304 3190 445 253 34 34 chr9 22237203 22237349 -95625278 - MER5A DNA MER1_type -1 188 43 244 207 90 63 chr9 22237406 22237517 -95625110 - L1ME3 LINE L1 -88 6074 5961 1283 214 53 83 chr9 22237611 22237769 -95624858 - L1MC5 LINE L1 -438 7523 7362 2129 147 3 15 chr9 22237769 22238110 -95624517 + MER1B DNA MER1_type 1 337 0 1283 214 53 83 chr9 22238110 22238479 -95624148 - L1MC5 LINE L1 -599 7362 7012 233 161 11 118 chr9 22238480 22238573 -95624054 - L1MC5 LINE L1 -1001 6960 6878 688 256 72 0 chr9 22239146 22239341 -95623286 + Charlie8 DNA MER1_type 1 209 -2208 553 230 91 30 chr9 22239341 22239506 -95623121 + MER5B DNA MER1_type 1 175 -3 239 349 138 0 chr9 22239725 22239834 -95622793 + MER5A DNA MER1_type 1 124 -65 505 284 26 37 chr9 22240265 22240455 -95622172 + MER5A DNA MER1_type 1 188 -1 286 306 194 8 chr9 22241452 22241586 -95621041 - MER5A DNA MER1_type -3 186 28 367 216 223 22 chr9 22241596 22241735 -95620892 + MER5A DNA MER1_type 9 175 -14 311 271 78 50 chr9 22241759 22241918 -95620709 - MER5B DNA MER1_type -16 173 1 847 183 70 5 chr9 22241930 22242116 -95620511 + L1MB8 LINE L1 5976 6173 -5 198 0 0 0 chr9 22242369 22242391 -95620236 + (A)n Simple_repeat Simple_repeat 1 22 0 21 0 0 0 chr9 22242477 22242498 -95620129 + AT_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr9 22243669 22243711 -95618916 + AT_rich Low_complexity Low_complexity 1 42 0 2202 118 3 0 chr9 22244449 22244746 -95617881 - AluSq SINE Alu -15 298 1 265 208 111 0 chr9 22244777 22244849 -95617778 - MIR SINE MIR -10 252 173 1435 147 43 52 chr9 22245009 22245336 -95617291 + MER33 DNA MER1_type 1 324 0 35 24 0 0 chr9 22247108 22247150 -95615477 + AT_rich Low_complexity Low_complexity 1 42 0 264 348 30 22 chr9 22247201 22247336 -95615291 + MIR SINE MIR 53 188 -74 24 53 0 0 chr9 22247854 22247892 -95614735 + AT_rich Low_complexity Low_complexity 1 38 0 508 150 71 9 chr9 22248104 22248217 -95614410 + L1MB7 LINE L1 6060 6179 -5 1465 203 13 29 chr9 22248244 22248554 -95614073 + AluJo SINE Alu 1 305 -7 207 0 0 0 chr9 22248582 22248605 -95614022 + (GGAA)n Simple_repeat Simple_repeat 1 23 0 377 291 103 18 chr9 22248967 22249151 -95613476 + L1MC4a LINE L1 5483 5490 -631 1721 145 37 4 chr9 22249151 22249420 -95613207 + AluJb SINE Alu 22 299 -13 377 291 103 18 chr9 22249420 22249609 -95613018 + L1MC4a LINE L1 5490 5661 -460 1846 167 3 31 chr9 22250031 22250348 -95612279 - AluJo SINE Alu -4 308 1 2683 59 0 0 chr9 22250373 22250712 -95611915 + L1PA3 LINE L1 5817 6155 0 881 315 114 30 chr9 22251058 22251939 -95610688 + L2 LINE L2 2281 3223 -49 1108 67 0 27 chr9 22251966 22252116 -95610511 + L1PA10 LINE L1 6012 6157 -11 2151 107 3 0 chr9 22252151 22252440 -95610187 + AluSp SINE Alu 1 290 -23 2167 93 3 10 chr9 22252893 22253182 -95609445 - AluSx SINE Alu -25 287 1 1399 156 48 73 chr9 22253628 22254000 -95608627 + L1MC5 LINE L1 6923 7285 -676 228 330 0 10 chr9 22254009 22254109 -95608518 + MIR SINE MIR 158 256 -6 1804 214 23 51 chr9 22254567 22255038 -95607589 + MLT1C LTR MaLR 9 466 -1 2248 129 14 3 chr9 22255580 22255936 -95606691 + MER46B DNA MER2_type 1 235 -1 25 0 0 0 chr9 22255978 22256003 -95606624 + AT_rich Low_complexity Low_complexity 1 25 0 210 37 0 0 chr9 22258939 22258966 -95603661 + (ATTG)n Simple_repeat Simple_repeat 4 30 0 1824 138 3 14 chr9 22258966 22259249 -95603378 - AluSx SINE Alu -32 280 1 497 241 147 34 chr9 22259793 22259943 -95602684 + L1MC4a LINE L1 5681 5813 -1995 2645 146 14 9 chr9 22259943 22260367 -95602260 + MSTB LTR MaLR 1 426 0 497 241 147 34 chr9 22260367 22260482 -95602145 + L1MC4a LINE L1 5813 5976 -1832 2103 105 0 20 chr9 22260631 22260925 -95601702 - AluSx SINE Alu -19 293 6 208 352 57 0 chr9 22261545 22261633 -95600994 - L2 LINE L2 -1 3271 3179 604 237 92 0 chr9 22261929 22262081 -95600546 + FRAM SINE Alu 1 166 0 240 35 0 0 chr9 22262103 22262132 -95600495 + (GGAA)n Simple_repeat Simple_repeat 2 30 0 11075 174 22 16 chr9 22262235 22264765 -95597862 + L1M1 LINE L1 3056 5598 -707 24512 54 1 0 chr9 22264870 22268019 -95594608 - L1P LINE L1 -2174 3972 823 591 116 0 0 chr9 22268235 22268321 -95594306 - AluS SINE Alu -223 90 5 22 0 0 0 chr9 22269867 22269889 -95592738 + AT_rich Low_complexity Low_complexity 1 22 0 292 310 93 8 chr9 22273863 22273992 -95588635 + MIR SINE MIR 123 262 0 1485 222 25 1 chr9 22274230 22274561 -95588066 - MER33 DNA MER1_type -1 323 1 1912 151 13 3 chr9 22274611 22274910 -95587717 + AluSx SINE Alu 1 302 -10 249 290 73 19 chr9 22275859 22276057 -95586570 - L1MC/D LINE L1 -237 5884 5716 910 182 0 6 chr9 22276100 22276270 -95586357 + MER3 DNA MER1_type 1 122 -87 365 211 193 0 chr9 22276262 22276376 -95586251 - MER3 DNA MER1_type -87 122 34 * 1255 239 4 0 chr9 22276818 22277065 -95585562 - MER68 LTR ERV1 -4 558 311 297 338 146 26 chr9 22279534 22279685 -95582942 + MIR3 SINE MIR 17 185 -23 3517 166 47 12 chr9 22279704 22280426 -95582201 - L1MB1 LINE L1 0 6168 5422 2058 219 133 53 chr9 22280426 22281187 -95581440 - L1M4 LINE L1 -3348 3034 2335 2117 143 0 6 chr9 22281187 22281501 -95581126 - AluSx SINE Alu 0 312 1 2058 219 133 53 chr9 22281501 22281968 -95580659 - L1M4 LINE L1 -4047 2335 1667 2024 122 9 34 chr9 22281968 22282288 -95580339 - AluSx SINE Alu 0 312 1 2058 219 133 53 chr9 22282288 22282466 -95580161 - L1M4 LINE L1 -4715 1667 1505 22 0 0 0 chr9 22282715 22282737 -95579890 + AT_rich Low_complexity Low_complexity 1 22 0 1176 209 66 80 chr9 22283562 22283912 -95578715 - MER2 DNA MER2_type 0 345 1 1714 157 116 61 chr9 22284043 22284450 -95578177 - L1MB8 LINE L1 -15 6163 5735 * 3378 198 35 16 chr9 22284433 22285866 -95576761 - L1MB7 LINE L1 -232 5952 4498 1679 204 0 0 chr9 22286062 22286356 -95576271 - AluJo SINE Alu -17 295 2 23 0 0 0 chr9 22286608 22286631 -95575996 + AT_rich Low_complexity Low_complexity 1 23 0 25 51 0 0 chr9 22286894 22286933 -95575694 + AT_rich Low_complexity Low_complexity 1 39 0 23 33 0 0 chr9 22287951 22287981 -95574646 + AT_rich Low_complexity Low_complexity 1 30 0 243 0 0 0 chr9 22288840 22288867 -95573760 + (A)n Simple_repeat Simple_repeat 1 27 0 180 206 0 0 chr9 22289308 22289342 -95573285 + L2 LINE L2 3216 3249 -23 281 281 173 22 chr9 22290697 22290836 -95571791 - MIR SINE MIR -16 246 87 201 239 119 15 chr9 22291496 22291563 -95571064 + MIR SINE MIR 81 154 -108 348 24 0 0 chr9 22291987 22292028 -95570599 + (TG)n Simple_repeat Simple_repeat 2 42 0 1964 185 40 32 chr9 22292938 22293482 -95569145 + MLT2A2 LTR ERVL 1 554 0 2073 164 25 30 chr9 22293863 22294302 -95568325 - L1MB8 LINE L1 0 6178 5742 1594 238 36 49 chr9 22294302 22294337 -95568290 + L1MA9 LINE L1 5749 5783 -529 246 105 0 0 chr9 22294337 22294375 -95568252 + (TG)n Simple_repeat Simple_repeat 2 39 0 1594 238 36 49 chr9 22294375 22294733 -95567894 + L1MA9 LINE L1 5783 6136 -176 1619 163 73 3 chr9 22294733 22295022 -95567605 + AluJo SINE Alu 1 309 -3 1594 238 36 49 chr9 22295022 22295160 -95567467 + L1MA9 LINE L1 6136 6274 -38 1560 163 7 0 chr9 22295164 22295441 -95567186 - L1MB8 LINE L1 -415 5769 5491 5643 93 5 10 chr9 22295471 22296266 -95566361 - L1PA10 LINE L1 -4 6164 5374 869 179 22 22 chr9 22296240 22296424 -95566203 - L1MB8 LINE L1 -672 5502 5319 * 203 236 0 136 chr9 22296716 22296826 -95565801 - MIR SINE MIR -13 249 155 613 244 35 78 chr9 22297059 22297518 -95565109 - L1MC5 LINE L1 -234 7727 7289 252 286 64 35 chr9 22297503 22297674 -95564953 - L1MC4a LINE L1 -414 7394 7219 * 1279 270 81 83 chr9 22298373 22298536 -95564091 + L2 LINE L2 2396 2558 -755 1266 103 46 73 chr9 22298536 22298767 -95563860 + L1MA9 LINE L1 6059 6284 -28 862 189 137 94 chr9 22298767 22298824 -95563803 + MLT1A1 LTR MaLR 1 54 -311 1735 161 7 4 chr9 22298824 22299131 -95563496 + AluJo SINE Alu 1 308 0 862 189 137 94 chr9 22299131 22299421 -95563206 + MLT1A1 LTR MaLR 54 365 0 1266 103 46 73 chr9 22299421 22299450 -95563177 + L1MA9 LINE L1 6284 6312 0 1279 270 81 83 chr9 22299450 22299928 -95562699 + L2 LINE L2 2558 3052 -261 222 37 0 0 chr9 22300668 22300695 -95561932 + (CA)n Simple_repeat Simple_repeat 2 28 0 1562 155 100 4 chr9 22300705 22300976 -95561651 - AluJo SINE Alu -15 297 1 190 333 200 0 chr9 22301344 22301449 -95561178 - MIR SINE MIR -37 225 100 23 0 0 0 chr9 22301602 22301625 -95561002 + AT_rich Low_complexity Low_complexity 1 23 0 325 278 111 35 chr9 22301755 22301953 -95560674 - L1MC4a LINE L1 -1786 6022 5810 2712 165 39 11 chr9 22301984 22302522 -95560105 + L1MB7 LINE L1 5631 6183 -1 208 269 0 0 chr9 22303750 22303802 -95558825 + T-rich Low_complexity Low_complexity 1 52 0 1968 138 47 0 chr9 22304519 22304815 -95557812 + AluSx SINE Alu 3 312 0 363 23 0 0 chr9 22305246 22305290 -95557337 + (CA)n Simple_repeat Simple_repeat 1 44 0 1041 95 0 50 chr9 22305367 22305546 -95557081 - L1MA5 LINE L1 -1 6299 6130 470 308 103 35 chr9 22308420 22308848 -95553779 + HAL1 LINE L1 1131 1587 -920 21 82 0 0 chr9 22309033 22309082 -95553545 + AT_rich Low_complexity Low_complexity 1 49 0 2497 62 3 0 chr9 22309530 22309834 -95552793 + AluY SINE Alu 1 305 -6 207 0 0 0 chr9 22309846 22309869 -95552758 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 11700 57 3 21 chr9 22309870 22312185 -95550442 - L1PA4 LINE L1 -11 6144 3840 1679 199 57 20 chr9 22312286 22312739 -95549888 + L1MA3 LINE L1 5831 6300 -5 26 50 0 0 chr9 22312739 22312779 -95549848 + AT_rich Low_complexity Low_complexity 1 40 0 228 360 11 11 chr9 22312786 22312875 -95549752 + L2 LINE L2 2759 2847 -467 23 0 0 0 chr9 22313206 22313229 -95549398 + AT_rich Low_complexity Low_complexity 1 23 0 385 246 155 7 chr9 22313648 22313790 -95548837 + MIR SINE MIR 2 164 -98 206 211 26 0 chr9 22316093 22316131 -95546496 + L2 LINE L2 3209 3247 -25 1114 225 9 0 chr9 22316185 22316407 -95546220 - MER58A DNA MER1_type 0 224 1 454 288 144 12 chr9 22316458 22316618 -95546009 - MER5A DNA MER1_type 0 189 9 321 332 37 108 chr9 22317487 22317755 -95544872 - L2 LINE L2 -5 3267 3019 1027 195 111 97 chr9 22317878 22318161 -95544466 - Charlie2 DNA MER1_type -5 2857 2579 334 80 0 0 chr9 22318161 22318211 -95544416 + L1PB4 LINE L1 6107 6156 0 1027 195 111 97 chr9 22318211 22318523 -95544104 - Charlie2 DNA MER1_type -283 2579 2254 1091 241 108 6 chr9 22318547 22318870 -95543757 - Charlie2 DNA MER1_type -2503 359 4 28 0 0 0 chr9 22319632 22319660 -95542967 + AT_rich Low_complexity Low_complexity 1 28 0 3263 147 82 15 chr9 22319897 22320504 -95542123 + MER39B LTR ERV1 6 653 0 24 0 0 0 chr9 22320604 22320628 -95541999 + AT_rich Low_complexity Low_complexity 1 24 0 1651 174 21 26 chr9 22321125 22321465 -95541162 + L1MB8 LINE L1 5835 6172 -6 379 276 241 17 chr9 22321509 22321683 -95540944 + MIR SINE MIR 32 244 -18 518 260 51 60 chr9 22322830 22323051 -95539576 + L1ME4a LINE L1 5593 5804 -349 216 0 0 0 chr9 22323055 22323079 -95539548 + (TA)n Simple_repeat Simple_repeat 2 25 0 333 287 74 42 chr9 22323082 22323298 -95539329 + L1ME4a LINE L1 5850 6072 -49 2455 97 0 0 chr9 22323861 22324172 -95538455 + AluSx SINE Alu 1 311 -1 218 411 47 0 chr9 22324175 22324282 -95538345 + L2 LINE L2 3160 3271 -1 768 193 17 44 chr9 22324311 22324492 -95538135 - L1M4 LINE L1 -419 5759 5584 8241 213 43 32 chr9 22324778 22328699 -95533928 + L1M1 LINE L1 2502 6411 -1154 968 105 20 7 chr9 22328709 22328861 -95533766 + L1MA3 LINE L1 6152 6305 0 1686 157 10 17 chr9 22328959 22329252 -95533375 + AluJb SINE Alu 1 291 -21 1223 176 5 9 chr9 22329359 22329569 -95533058 - AluJo SINE Alu -103 209 1 304 264 92 80 chr9 22329885 22330048 -95532579 + MIR3 SINE MIR 10 174 -34 354 234 151 128 chr9 22330050 22330486 -95532141 - MLT1J1 LTR MaLR 0 446 1 1863 155 132 5 chr9 22330734 22331116 -95531511 - Tigger2 DNA MER2_type 0 2718 1 1740 144 0 45 chr9 22331818 22332131 -95530496 + AluJo SINE Alu 1 299 -13 314 136 0 61 chr9 22332795 22332861 -95529766 + FAM SINE Alu 118 179 0 207 0 0 0 chr9 22333564 22333587 -95529040 + (T)n Simple_repeat Simple_repeat 1 23 0 2203 99 3 3 chr9 22333650 22333943 -95528684 + AluSq SINE Alu 3 295 -18 617 198 159 0 chr9 22334237 22334363 -95528264 + MER58A DNA MER1_type 3 148 0 330 241 23 11 chr9 22335333 22335420 -95527207 + MER103 DNA DNA 2 89 -77 628 256 83 6 chr9 22335432 22335612 -95527015 + L2 LINE L2 2238 2431 -883 983 67 8 0 chr9 22335712 22335832 -95526795 + AluSq/x SINE Alu 1 121 -191 782 147 21 7 chr9 22336077 22336220 -95526407 + AluSg/x SINE Alu 156 300 -12 561 193 22 67 chr9 22336220 22336270 -95526357 + L2 LINE L2 2433 2484 -830 2247 125 7 0 chr9 22336270 22336575 -95526052 - AluSx SINE Alu -5 307 1 561 193 22 67 chr9 22336575 22336659 -95525968 + L2 LINE L2 2484 2561 -753 1444 284 56 40 chr9 22336696 22337262 -95525365 + L2 LINE L2 2745 3313 0 1245 110 59 59 chr9 22337624 22337860 -95524767 - MER46A DNA MER2_type 0 236 1 24 0 0 0 chr9 22337965 22337989 -95524638 + AT_rich Low_complexity Low_complexity 1 24 0 624 74 0 0 chr9 22338149 22338244 -95524383 + (TTCC)n Simple_repeat Simple_repeat 4 98 0 29 0 0 0 chr9 22339020 22339049 -95523578 + AT_rich Low_complexity Low_complexity 1 29 0 22 70 0 0 chr9 22339330 22339373 -95523254 + AT_rich Low_complexity Low_complexity 1 43 0 27 0 0 0 chr9 22339876 22339903 -95522724 + AT_rich Low_complexity Low_complexity 1 27 0 454 202 225 16 chr9 22340238 22340367 -95522260 + HsTC2 DNA Tc2 1 156 -1742 621 222 18 18 chr9 22340372 22340539 -95522088 + HsTC2 DNA Tc2 1732 1898 0 378 304 61 0 chr9 22341078 22341226 -95521401 + MIR SINE MIR 94 250 -12 21 71 0 0 chr9 22341567 22341609 -95521018 + AT_rich Low_complexity Low_complexity 1 42 0 2226 112 0 3 chr9 22342622 22342925 -95519702 - AluSx SINE Alu -10 302 1 216 0 0 0 chr9 22343321 22343345 -95519282 + (T)n Simple_repeat Simple_repeat 1 24 0 247 317 134 24 chr9 22344911 22344963 -95517664 - L3b LINE CR1 -265 1318 1273 2169 131 0 0 chr9 22344963 22345261 -95517366 + AluSx SINE Alu 2 299 -13 247 317 134 24 chr9 22345261 22345372 -95517255 - L3b LINE CR1 -310 1273 1137 8570 28 0 1 chr9 22345527 22346767 -95515860 - L1P2 LINE L1 -554 5601 4363 25 0 0 0 chr9 22346985 22347010 -95515617 + AT_rich Low_complexity Low_complexity 1 25 0 201 269 74 56 chr9 22347550 22347658 -95514969 - MER5B DNA MER1_type -62 116 7 2594 145 34 0 chr9 22348401 22348815 -95513812 - MSTA LTR MaLR 0 428 1 268 349 81 55 chr9 22349108 22349380 -95513247 - L2 LINE L2 -133 3139 2861 290 77 0 0 chr9 22349584 22349623 -95513004 - MLT1A1 LTR MaLR -32 358 320 1950 131 18 3 chr9 22349626 22349908 -95512719 + AluSx SINE Alu 1 286 -26 339 172 16 0 chr9 22349915 22349979 -95512648 - MLT1A1 LTR MaLR -52 313 249 2061 133 3 22 chr9 22350090 22350406 -95512221 + AluSq SINE Alu 1 310 -3 413 335 120 5 chr9 22350422 22350622 -95512005 - L1M4c LINE L1 -4874 1510 1288 21 36 0 0 chr9 22350622 22350650 -95511977 + AT_rich Low_complexity Low_complexity 1 28 0 226 0 59 0 chr9 22350692 22350726 -95511901 + (TA)n Simple_repeat Simple_repeat 1 36 0 1465 194 28 22 chr9 22350726 22351082 -95511545 + L1MB8 LINE L1 5815 6172 -6 689 174 154 25 chr9 22351105 22351288 -95511339 - L1MD2 LINE L1 -73 7912 6194 777 169 14 12 chr9 22351288 22351432 -95511195 - THE1B LTR MaLR 0 364 246 1815 132 69 0 chr9 22351519 22351808 -95510819 - AluSx SINE Alu -3 309 1 198 0 0 0 chr9 22353796 22353818 -95508809 + (TTG)n Simple_repeat Simple_repeat 2 23 0 352 222 8 86 chr9 22356744 22356861 -95505766 - L1ME2 LINE L1 -11 6153 6046 1167 183 97 10 chr9 22356861 22357160 -95505467 - MER33 DNA MER1_type -9 315 1 2137 199 104 57 chr9 22357160 22357452 -95505175 - L1ME2 LINE L1 -129 6035 5758 2342 113 44 3 chr9 22357452 22357816 -95504811 - L1PA11 LINE L1 0 6174 5796 2137 199 104 57 chr9 22357816 22358175 -95504452 - L1ME2 LINE L1 -406 5758 5353 475 288 56 30 chr9 22358270 22358468 -95504159 - MER102a DNA MER1_type -14 316 114 3394 162 130 70 chr9 22358657 22359504 -95503123 + L1MA1 LINE L1 5392 6289 -13 210 91 0 0 chr9 22359816 22359849 -95502778 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 697 185 0 0 chr9 22359852 22359971 -95502656 - FLAM_C SINE Alu -24 119 1 319 311 112 12 chr9 22360477 22360638 -95501989 - MER5B DNA MER1_type -1 177 1 487 196 76 0 chr9 22360673 22360765 -95501862 - MER5A DNA MER1_type -88 101 3 2297 96 3 0 chr9 22360949 22361240 -95501387 - AluSp SINE Alu -21 292 1 200 235 82 94 chr9 22361798 22361883 -95500744 - MIR SINE MIR -153 109 26 3102 40 0 0 chr9 22362379 22362753 -95499874 - L1PA3 LINE L1 -3 6152 5779 7479 28 60 0 chr9 22362753 22363679 -95498948 + L1P LINE L1 4115 5096 -1050 313 352 45 25 chr9 22364012 22364211 -95498416 + L2 LINE L2 2550 2752 -562 272 355 121 45 chr9 22364408 22364828 -95497799 + L2 LINE L2 2805 3256 -16 371 118 0 0 chr9 22364842 22364893 -95497734 + AluSg/x SINE Alu 214 264 -36 660 189 8 16 chr9 22365058 22365180 -95497447 - FLAM_A SINE Alu -11 122 2 375 286 83 12 chr9 22365284 22365425 -95497202 - MIR3 SINE MIR -10 198 42 2241 113 0 0 chr9 22365425 22365727 -95496900 - AluY SINE Alu -9 302 1 375 286 83 12 chr9 22365727 22365753 -95496874 - MIR3 SINE MIR -166 42 19 365 319 25 8 chr9 22366418 22366537 -95496090 + L2 LINE L2 3193 3313 0 25 0 0 0 chr9 22366655 22366680 -95495947 + AT_rich Low_complexity Low_complexity 1 25 0 1080 209 17 0 chr9 22366687 22366922 -95495705 - L1PA16 LINE L1 -15 6151 5913 186 260 106 39 chr9 22367208 22367312 -95495315 - L2 LINE L2 -23 3290 3180 1013 163 0 0 chr9 22367336 22367483 -95495144 + FAM SINE Alu 20 166 -19 272 287 122 63 chr9 22367547 22367784 -95494843 - L2 LINE L2 -218 3054 2804 515 279 54 0 chr9 22367952 22368099 -95494528 + MIR SINE MIR 87 241 -21 2258 86 0 10 chr9 22368272 22368562 -95494065 - AluSc SINE Alu -22 287 1 404 333 60 12 chr9 22370344 22370512 -95492115 - L3 LINE CR1 -2 1575 1400 226 188 0 31 chr9 22370616 22370680 -95491947 + CT-rich Low_complexity Low_complexity 3 64 0 14918 31 0 0 chr9 22370835 22373377 -95489250 - L1PA3 LINE L1 -3 6152 3607 24 0 0 0 chr9 22373452 22373476 -95489151 + AT_rich Low_complexity Low_complexity 1 24 0 1186 198 24 0 chr9 22374304 22374516 -95488111 + MER20 DNA MER1_type 2 218 -1 265 323 0 0 chr9 22375202 22375264 -95487363 + L2 LINE L2 3209 3270 -2 22 0 0 0 chr9 22376174 22376196 -95486431 + AT_rich Low_complexity Low_complexity 1 22 0 230 204 23 0 chr9 22376625 22376669 -95485958 - L2 LINE L2 -4 3268 3224 209 305 67 67 chr9 22376668 22376773 -95485854 - MIR SINE MIR -157 105 1 * 221 354 0 0 chr9 22376773 22376838 -95485789 - L2 LINE L2 -91 3181 3117 214 322 149 18 chr9 22378222 22378360 -95484267 - MIR SINE MIR -69 139 4 273 109 0 0 chr9 22378723 22378769 -95483858 + (T)n Simple_repeat Simple_repeat 1 46 0 527 32 0 0 chr9 22379358 22379421 -95483206 + L1P LINE L1 4168 4230 -1916 592 258 36 68 chr9 22480125 22480346 -95382281 - MIR SINE MIR 0 262 49 250 109 0 0 chr9 22480770 22480816 -95381811 - Alu SINE Alu -4 296 251 489 66 0 0 chr9 22480817 22480878 -95381749 + AluSg/x SINE Alu 73 133 -177 2227 103 0 7 chr9 22481017 22481317 -95381310 - AluSc SINE Alu -11 298 1 1662 95 5 5 chr9 22481491 22481713 -95380914 - AluSg/x SINE Alu -5 305 84 21 0 0 0 chr9 22481885 22481906 -95380721 + AT_rich Low_complexity Low_complexity 1 21 0 202 211 0 39 chr9 22482297 22482349 -95380278 + A-rich Low_complexity Low_complexity 1 50 0 821 89 0 16 chr9 22482667 22482790 -95379837 + L1PA8 LINE L1 6052 6172 0 7395 257 33 33 chr9 22484053 22487639 -95374988 - L1PA12 LINE L1 -4526 3055 6 714 230 21 0 chr9 22488347 22488582 -95374045 - L1M4 LINE L1 -3000 3146 2907 906 98 0 0 chr9 22488587 22488719 -95373908 - L1PA6 LINE L1 0 6154 6023 25 65 0 0 chr9 22489258 22489304 -95373323 + AT_rich Low_complexity Low_complexity 1 46 0 2876 206 72 23 chr9 22490292 22491202 -95371425 + MER106B DNA MER1_type 28 982 -77 201 171 0 0 chr9 22492240 22492275 -95370352 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 23 0 0 0 chr9 22492275 22492298 -95370329 + AT_rich Low_complexity Low_complexity 1 23 0 211 340 61 27 chr9 22492531 22492678 -95369949 - L2 LINE L2 -38 3275 3124 31 58 0 0 chr9 22493387 22493439 -95369188 + AT_rich Low_complexity Low_complexity 1 52 0 2880 102 23 4 chr9 22493557 22494320 -95368307 + L1PA8A LINE L1 4880 5651 -480 23 68 0 0 chr9 22494582 22494626 -95368001 + AT_rich Low_complexity Low_complexity 1 44 0 13148 113 5 13 chr9 22494763 22496893 -95365734 + L1P LINE L1 1341 3454 -2692 3046 64 0 5 chr9 22496878 22497286 -95365341 - L1P LINE L1 -1179 4967 4562 * 4137 187 11 6 chr9 22497387 22498236 -95364391 - L1PA13 LINE L1 -1957 4840 3988 2968 247 47 7 chr9 22498239 22499098 -95363529 - L1PA13 LINE L1 -3690 3107 2215 3112 23 0 0 chr9 22499105 22499503 -95363124 + L1PA4 LINE L1 2805 3202 -2944 16159 27 0 0 chr9 22499604 22502287 -95360340 + L1PA4 LINE L1 3471 6152 -3 33 0 0 0 chr9 22502287 22502320 -95360307 + AT_rich Low_complexity Low_complexity 1 33 0 4989 198 21 8 chr9 22502459 22503490 -95359137 - L1PA13 LINE L1 -4583 2204 1160 1438 222 36 0 chr9 22505172 22505506 -95357121 + L1MD3 LINE L1 7551 7896 -99 1720 219 62 31 chr9 22506072 22506552 -95356075 - MLT2B3 LTR ERVL -57 497 3 1818 170 38 30 chr9 22507178 22507573 -95355054 - L1MB2 LINE L1 -2 6169 5772 1713 184 16 103 chr9 22507651 22508130 -95354497 - L1M3 LINE L1 -354 5814 5392 1743 188 28 6 chr9 22508130 22508482 -95354145 - MLT1A1 LTR MaLR -3 362 3 1713 184 16 103 chr9 22508482 22508577 -95354050 - L1M3 LINE L1 -776 5392 5290 6811 58 0 2 chr9 22508565 22509728 -95352899 - L1PA3 LINE L1 -1 6154 4978 1768 63 8 0 chr9 22509730 22509968 -95352659 + L1P LINE L1 4090 4329 -1817 824 261 21 9 chr9 22510068 22510401 -95352226 - L1M3 LINE L1 -923 5223 4887 22 35 0 0 chr9 22510513 22510542 -95352085 + AT_rich Low_complexity Low_complexity 1 29 0 1266 108 54 58 chr9 22511638 22511856 -95350771 - L1MA5A LINE L1 0 6297 6079 1946 132 20 54 chr9 22511856 22512205 -95350422 - MER1B DNA MER1_type 0 337 1 1266 108 54 58 chr9 22512205 22512264 -95350363 - L1MA5A LINE L1 -218 6079 6021 1982 143 48 11 chr9 22512327 22512706 -95349921 - L1MA5A LINE L1 -266 6031 5639 406 103 0 0 chr9 22512702 22512760 -95349867 - L1MA1 LINE L1 -447 5855 5798 * 2073 200 22 19 chr9 22512761 22513296 -95349331 - L1M3 LINE L1 -1444 4702 4166 443 169 12 0 chr9 22513303 22513386 -95349241 - L1M3 LINE L1 -1897 4249 4166 280 252 0 122 chr9 22513381 22513504 -95349123 + L1M2c LINE L1 1072 1179 -5610 * 5276 92 7 3 chr9 22513865 22514637 -95347990 + L1PA14 LINE L1 5383 6157 -4 182 331 33 26 chr9 22514750 22514901 -95347726 - L2 LINE L2 -978 2336 2185 2121 142 7 0 chr9 22516054 22516184 -95346443 + AluSx SINE Alu 1 129 -183 207 0 0 0 chr9 22516184 22516207 -95346420 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2121 142 7 0 chr9 22516207 22516386 -95346241 + AluSx SINE Alu 129 312 0 593 243 27 36 chr9 22516486 22516708 -95345919 + L1M4 LINE L1 5057 5276 -870 449 72 14 0 chr9 22516708 22516777 -95345850 + L1MA2 LINE L1 5778 5847 -457 3874 231 94 87 chr9 22516888 22518047 -95344580 + L1MD3 LINE L1 6126 7419 -576 481 263 0 0 chr9 22518047 22518165 -95344462 + MLT1F1 LTR MaLR 8 125 -442 3874 231 94 87 chr9 22518165 22518732 -95343895 + L1MD3 LINE L1 7419 7981 -14 1340 232 146 19 chr9 22518905 22519315 -95343312 + MER31B LTR ERV1 5 466 0 195 314 43 0 chr9 22520092 22520162 -95342465 + L2 LINE L2 3224 3296 -17 3077 206 64 32 chr9 22521044 22522065 -95340562 + MER106B DNA MER1_type 3 1055 -4 21 57 0 0 chr9 22523046 22523081 -95339546 + AT_rich Low_complexity Low_complexity 1 35 0 187 217 49 84 chr9 22523345 22523488 -95339139 - L2 LINE L2 -65 3248 3111 338 132 26 13 chr9 22524153 22524229 -95338398 + MSTA LTR MaLR 352 428 0 9622 173 6 3 chr9 22524229 22525875 -95336752 + MSTA-int LTR MaLR 1 1651 0 2237 149 20 78 chr9 22525875 22526288 -95336339 + MSTA LTR MaLR 1 387 -41 2086 142 0 0 chr9 22526288 22526576 -95336051 - AluSx SINE Alu -24 288 1 2237 149 20 78 chr9 22526576 22526612 -95336015 + MSTA LTR MaLR 387 424 -4 1322 25 0 0 chr9 22526626 22526783 -95335844 - L1PA3 LINE L1 -1 6154 5998 21 36 0 0 chr9 22526975 22527003 -95335624 + AT_rich Low_complexity Low_complexity 1 28 0 1759 180 23 12 chr9 22529064 22529409 -95333218 + MLT2D LTR ERVL 16 364 -50 223 246 0 15 chr9 22529465 22529530 -95333097 + (CA)n Simple_repeat Simple_repeat 1 64 0 338 104 0 0 chr9 22529533 22529581 -95333046 + MLT2D LTR ERVL 350 397 0 527 188 61 91 chr9 22529692 22529857 -95332770 - MER5B DNA MER1_type -1 177 18 193 385 54 27 chr9 22530052 22530200 -95332427 - L2 LINE L2 0 3272 3121 334 241 154 41 chr9 22530228 22530389 -95332238 - MIR SINE MIR -10 252 9 425 351 7 23 chr9 22530678 22530867 -95331760 - MIR3 SINE MIR -1 207 22 384 253 151 14 chr9 22531253 22531399 -95331228 - MLT1J2 LTR MaLR -134 316 151 243 250 29 0 chr9 22531437 22531505 -95331122 - MLT1J1 LTR MaLR -375 71 2 2265 117 10 0 chr9 22532776 22533085 -95329542 + AluSx SINE Alu 1 312 0 510 300 73 85 chr9 22534131 22534448 -95328179 + L2 LINE L2 2960 3272 0 230 132 19 0 chr9 22534841 22534894 -95327733 + T-rich Low_complexity Low_complexity 3 56 0 6510 16 0 3 chr9 22534903 22535651 -95326976 - L1PA3 LINE L1 -2 6153 5408 23 0 0 0 chr9 22536523 22536546 -95326081 + AT_rich Low_complexity Low_complexity 1 23 0 435 274 130 43 chr9 22537123 22537353 -95325274 - MIR SINE MIR -1 261 12 213 119 0 0 chr9 22537779 22537821 -95324806 + (T)n Simple_repeat Simple_repeat 1 42 0 2445 230 102 14 chr9 22538824 22539714 -95322913 + L1ME2 LINE L1 5179 6156 -8 392 282 0 12 chr9 22539836 22539921 -95322706 + MER5B DNA MER1_type 50 133 -45 23 0 0 0 chr9 22539989 22540012 -95322615 + AT_rich Low_complexity Low_complexity 1 23 0 1449 213 27 43 chr9 22540014 22540390 -95322237 + MLT1A2 LTR MaLR 1 370 -4 27 49 0 0 chr9 22540847 22540888 -95321739 + AT_rich Low_complexity Low_complexity 1 41 0 1769 52 5 0 chr9 22541019 22541232 -95321395 - 7SLRNA srpRNA srpRNA -89 231 18 11026 35 5 0 chr9 22541233 22543358 -95319269 + L1PA5 LINE L1 3999 6154 0 279 0 0 0 chr9 22543358 22543389 -95319238 + (TA)n Simple_repeat Simple_repeat 1 31 0 535 329 28 24 chr9 22547505 22547754 -95314873 + MIR SINE MIR 3 252 -10 288 379 63 25 chr9 22547769 22548136 -95314491 + L2 LINE L2 962 1342 -1972 350 305 67 60 chr9 22548652 22548967 -95313660 + L2 LINE L2 2009 2325 -989 376 289 152 46 chr9 22548976 22549173 -95313454 - L2 LINE L2 0 3272 3055 263 241 0 0 chr9 22549202 22549256 -95313371 + L2 LINE L2 3255 3308 -5 370 281 36 50 chr9 22549460 22549599 -95313028 - MIR SINE MIR -49 213 77 1798 190 135 24 chr9 22549647 22550431 -95312196 + MER45B DNA AcHobo 123 1040 0 182 308 19 19 chr9 22550435 22550487 -95312140 - MIR SINE MIR -179 83 32 736 269 56 27 chr9 22550608 22550959 -95311668 + LTR16A LTR ERVL 1 444 -6 1853 161 0 57 chr9 22552443 22552760 -95309867 + AluJb SINE Alu 1 299 -13 1505 260 50 32 chr9 22552925 22553441 -95309186 + L2 LINE L2 2776 3311 -2 588 301 53 31 chr9 22556145 22556371 -95306256 + MIR SINE MIR 28 258 -4 1066 176 189 47 chr9 22556823 22557182 -95305445 - MER45B DNA AcHobo -112 928 519 329 306 169 0 chr9 22557604 22557787 -95304840 + MIR SINE MIR 49 262 0 267 250 0 0 chr9 22558149 22558209 -95304418 + (TG)n Simple_repeat Simple_repeat 2 61 0 188 229 33 0 chr9 22558949 22559010 -95303617 + CT-rich Low_complexity Low_complexity 1 63 0 29 60 0 0 chr9 22559126 22559176 -95303451 + AT_rich Low_complexity Low_complexity 1 50 0 321 318 56 32 chr9 22559337 22559463 -95303164 - MIR3 SINE MIR -72 136 8 289 259 111 9 chr9 22559615 22559816 -95302811 + Charlie2 DNA MER1_type 1 286 -2496 1391 214 106 101 chr9 22559839 22560827 -95301800 + Charlie2 DNA MER1_type 1870 2862 0 22 0 0 0 chr9 22561701 22561723 -95300904 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 22562253 22562274 -95300353 + AT_rich Low_complexity Low_complexity 1 21 0 2059 123 3 0 chr9 22563156 22563449 -95299178 - AluSx SINE Alu -18 294 1 213 250 0 0 chr9 22564053 22564113 -95298514 + CT-rich Low_complexity Low_complexity 1 60 0 293 366 0 0 chr9 22564888 22564981 -95297646 - MIR3 SINE MIR -6 202 110 369 337 87 17 chr9 22564982 22565154 -95297473 + MIR SINE MIR 2 185 -77 1286 233 49 6 chr9 22565913 22566239 -95296388 + MER58B DNA MER1_type 2 341 0 358 343 65 5 chr9 22566306 22566522 -95296105 + L2 LINE L2 2552 2780 -534 2272 104 0 3 chr9 22566522 22566821 -95295806 - AluY SINE Alu -13 298 1 255 174 43 0 chr9 22566849 22566895 -95295732 - HSMAR1 DNA Mariner -1236 51 4 2076 123 0 7 chr9 22569258 22569569 -95293058 - AluSq SINE Alu 0 309 1 4099 132 19 23 chr9 22570575 22571301 -95291326 + L1MA8 LINE L1 5538 6260 -31 504 115 0 82 chr9 22571327 22571449 -95291178 + L1MA8 LINE L1 6178 6289 -2 448 323 16 0 chr9 22571472 22571599 -95291028 + MER5A DNA MER1_type 61 189 0 215 361 83 15 chr9 22573165 22573298 -95289329 + MIR3 SINE MIR 4 145 -63 868 343 116 11 chr9 22573320 22573699 -95288928 + MER115 DNA AcHobo 38 456 -237 611 117 0 0 chr9 22573905 22573999 -95288628 - AluY SINE Alu 0 311 218 1544 65 0 0 chr9 22573999 22574184 -95288443 - AluY SINE Alu -126 185 1 526 306 50 54 chr9 22574435 22574693 -95287934 + MIR SINE MIR 6 262 0 2134 103 31 0 chr9 22575473 22575765 -95286862 - AluSg SINE Alu -9 301 1 1692 192 3 3 chr9 22575842 22576134 -95286493 - AluJo SINE Alu -16 296 5 211 237 105 35 chr9 22577130 22577244 -95285383 - MIR SINE MIR -70 192 71 429 272 74 37 chr9 22577426 22577588 -95285039 - MER5A DNA MER1_type 0 189 22 7032 40 7 0 chr9 22577588 22578460 -95284167 + L1PA4 LINE L1 5270 6147 -8 28 0 0 0 chr9 22578463 22578491 -95284136 + AT_rich Low_complexity Low_complexity 1 28 0 24 67 0 0 chr9 22579005 22579050 -95283577 + AT_rich Low_complexity Low_complexity 1 45 0 441 239 168 7 chr9 22580262 22580417 -95282210 + MIR SINE MIR 79 258 -4 231 125 0 0 chr9 22580618 22580658 -95281969 + (TG)n Simple_repeat Simple_repeat 2 41 0 312 347 16 0 chr9 22582605 22582726 -95279901 + MIR3 SINE MIR 76 198 -10 426 279 7 78 chr9 22582809 22582963 -95279664 - MER5A DNA MER1_type -31 158 5 315 233 58 19 chr9 22583019 22583122 -95279505 - MLT1L LTR MaLR -4 611 505 233 363 22 0 chr9 22583245 22583336 -95279291 - MLT1L LTR MaLR -347 268 176 911 210 6 0 chr9 22583348 22583524 -95279103 - MER5B DNA MER1_type 0 178 2 1327 204 117 0 chr9 22584676 22584941 -95277686 + AluJb SINE Alu 3 298 -4 2519 190 11 50 chr9 22585536 22586072 -95276555 + MLT2B2 LTR ERVL 1 515 0 2335 84 0 0 chr9 22586186 22586473 -95276154 + AluY SINE Alu 13 299 -12 447 331 53 0 chr9 22586760 22586911 -95275716 - MIR SINE MIR -9 253 95 242 360 0 0 chr9 22587385 22587485 -95275142 + MIR SINE MIR 163 262 0 291 314 81 32 chr9 22587745 22587869 -95274758 - MIR3 SINE MIR -51 157 28 264 387 57 21 chr9 22587882 22588217 -95274410 + L2 LINE L2 2701 3046 -226 30504 116 11 65 chr9 22588261 22594736 -95267891 + L1PA7 LINE L1 35 6154 0 2012 53 89 60 chr9 22594839 22595141 -95267486 - AluY SINE Alu 0 311 1 23 33 0 0 chr9 22595190 22595220 -95267407 + AT_rich Low_complexity Low_complexity 1 30 0 358 351 53 0 chr9 22595287 22595418 -95267209 + L2 LINE L2 3134 3271 -1 547 277 135 30 chr9 22595600 22595896 -95266731 - LTR16A LTR ERVL -41 409 83 724 336 52 12 chr9 22596125 22596449 -95266178 - ERVL LTR ERVL -919 4845 4509 459 136 0 0 chr9 22596793 22596874 -95265753 + L1MA5A LINE L1 6214 6294 -3 597 343 22 11 chr9 22597180 22597542 -95265085 - L1M4 LINE L1 -2309 3837 3472 6209 193 52 11 chr9 22597593 22599603 -95263024 - L1MA2 LINE L1 0 6304 4208 298 265 173 19 chr9 22599612 22600092 -95262535 - L1M4 LINE L1 -2741 3405 2852 2834 7 0 0 chr9 22600102 22600407 -95262220 - AluYa5 SINE Alu -6 305 1 1002 119 6 11 chr9 22601122 22601299 -95261328 + (TTTC)n Simple_repeat Simple_repeat 4 179 0 372 94 0 0 chr9 22601300 22601353 -95261274 + (TCCC)n Simple_repeat Simple_repeat 4 56 0 189 0 0 0 chr9 22601740 22601761 -95260866 + (A)n Simple_repeat Simple_repeat 1 21 0 568 294 86 39 chr9 22602379 22602842 -95259785 - L1M4 LINE L1 -3316 2830 2346 4262 161 136 77 chr9 22602958 22603282 -95259345 - L1MC3 LINE L1 0 7785 7482 246 32 0 0 chr9 22603282 22603313 -95259314 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4262 161 136 77 chr9 22603313 22603575 -95259052 - L1MC3 LINE L1 -303 7482 7237 265 274 27 0 chr9 22603575 22603648 -95258979 - MLT1F1 LTR MaLR -442 125 51 4262 161 136 77 chr9 22603648 22603868 -95258759 - L1MC3 LINE L1 -548 7237 7031 342 0 0 0 chr9 22603868 22603906 -95258721 + (TG)n Simple_repeat Simple_repeat 2 39 0 4262 161 136 77 chr9 22603906 22604152 -95258475 - L1MC3 LINE L1 -754 7031 6801 297 51 0 0 chr9 22604152 22604191 -95258436 + (TG)n Simple_repeat Simple_repeat 2 40 0 4262 161 136 77 chr9 22604191 22604247 -95258380 - L1MC3 LINE L1 -984 6801 6532 740 275 55 50 chr9 22604244 22604641 -95257986 - HAL1 LINE L1 -1359 1148 750 * 881 197 74 77 chr9 22604644 22604954 -95257673 - Charlie4a DNA MER1_type 0 508 200 553 255 35 86 chr9 22604967 22605281 -95257346 - L1M4 LINE L1 -2376 3770 3473 251 252 107 48 chr9 22605289 22605392 -95257235 - MER21B LTR ERV1 -668 195 87 362 179 60 15 chr9 22605433 22605500 -95257127 - MER21B LTR ERV1 -767 96 27 1050 246 132 24 chr9 22605531 22606022 -95256605 - L1M4 LINE L1 -3288 2858 2315 738 296 67 3 chr9 22606046 22606330 -95256297 - L1ME1 LINE L1 -92 6074 5773 650 189 85 20 chr9 22606316 22606469 -95256158 - L1MC4 LINE L1 -1042 7000 6838 * 1735 191 30 0 chr9 22606470 22606930 -95255697 - AluJb SINE Alu 0 471 3 14448 187 16 13 chr9 22606945 22608435 -95254192 - L1PA15 LINE L1 0 6868 5384 2329 91 0 3 chr9 22608435 22608732 -95253895 - AluSx SINE Alu -16 296 1 14448 187 16 13 chr9 22608732 22611159 -95251468 - L1PA15 LINE L1 -1484 5384 2917 2317 203 19 72 chr9 22611159 22611744 -95250883 - MLT2B3 LTR ERVL 0 554 1 14448 187 16 13 chr9 22611744 22612742 -95249885 - L1PA15 LINE L1 -3951 2917 1924 671 186 0 0 chr9 22613192 22613310 -95249317 - MLT1A1 LTR MaLR -78 287 170 435 304 7 0 chr9 22613577 22613712 -95248915 + MER63 DNA MER1_type 1 762 -74 343 293 58 97 chr9 22613869 22614128 -95248499 - L1MEd LINE L1 -5870 249 1 222 156 0 0 chr9 22615077 22615122 -95247505 + (TG)n Simple_repeat Simple_repeat 2 46 0 21 71 0 0 chr9 22615806 22615848 -95246779 + AT_rich Low_complexity Low_complexity 1 42 0 446 0 19 0 chr9 22616008 22616062 -95246565 + (TCTA)n Simple_repeat Simple_repeat 3 57 0 1547 208 91 40 chr9 22616142 22616178 -95246449 - MLT2B2 LTR ERVL -66 449 416 2191 130 14 8 chr9 22616178 22616531 -95246096 + THE1A LTR MaLR 1 355 0 11383 91 19 6 chr9 22616531 22618090 -95244537 + THE1A-int LTR MaLR 1 1579 -1 2166 138 11 8 chr9 22618091 22618445 -95244182 + THE1A LTR MaLR 1 355 0 1547 208 91 40 chr9 22618445 22618832 -95243795 - MLT2B2 LTR ERVL -98 417 1 393 102 0 0 chr9 22618939 22618998 -95243629 + (TC)n Simple_repeat Simple_repeat 1 59 0 429 282 135 6 chr9 22619501 22619671 -95242956 + MIR SINE MIR 1 192 -70 1349 198 12 6 chr9 22619856 22620175 -95242452 - MER33 DNA MER1_type -3 321 1 200 190 13 152 chr9 22620870 22620949 -95241678 + MIR SINE MIR 179 246 -16 585 309 28 6 chr9 22620980 22621161 -95241466 - MIR SINE MIR -74 188 4 361 176 99 45 chr9 22621481 22621634 -95240993 + L1ME3A LINE L1 5790 5959 -203 235 301 32 45 chr9 22621696 22621852 -95240775 + L1ME3A LINE L1 5965 6118 -52 617 178 51 0 chr9 22622088 22622206 -95240421 - L2 LINE L2 0 3313 3190 598 53 0 0 chr9 22622354 22622429 -95240198 - AluY SINE Alu -225 85 11 483 229 0 0 chr9 22622866 22622971 -95239656 + L1PB4 LINE L1 6019 6123 -33 2444 60 3 16 chr9 22623388 22623702 -95238925 + AluY SINE Alu 1 310 -1 988 249 20 101 chr9 22623837 22624275 -95238352 - L2 LINE L2 0 3313 2911 198 271 0 0 chr9 22624604 22624652 -95237975 - MIR SINE MIR -111 151 104 195 42 0 0 chr9 22625099 22625123 -95237504 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 278 330 11 23 chr9 22625140 22625228 -95237399 - MIR SINE MIR -102 106 20 207 220 20 0 chr9 22625350 22625400 -95237227 + L2 LINE L2 2932 2982 -290 2301 180 45 17 chr9 22625433 22625949 -95236678 - L1MC3 LINE L1 -6 7779 7250 887 170 0 77 chr9 22626050 22626232 -95236395 + FRAM SINE Alu 1 160 -16 21 0 0 0 chr9 22626409 22626430 -95236197 + AT_rich Low_complexity Low_complexity 1 21 0 2133 126 7 0 chr9 22627110 22627419 -95235208 + AluSx SINE Alu 1 311 -1 234 345 132 11 chr9 22627421 22627595 -95235032 + MIR3 SINE MIR 5 199 -9 2508 58 0 7 chr9 22627606 22627914 -95234713 - AluY SINE Alu -5 306 1 2508 71 0 6 chr9 22629911 22630222 -95232405 + AluSp SINE Alu 1 309 -4 491 316 14 46 chr9 22630445 22630663 -95231964 + MIR SINE MIR 4 214 -48 4043 89 11 0 chr9 22630685 22631233 -95231394 - MER41A LTR ERV1 0 554 1 341 328 13 9 chr9 22632673 22632806 -95229821 - MIR SINE MIR -58 150 14 732 115 0 0 chr9 22633229 22633342 -95229285 + (TTCC)n Simple_repeat Simple_repeat 2 114 0 367 281 161 68 chr9 22633447 22633857 -95228770 + MLT1H LTR MaLR 86 533 -16 300 330 147 0 chr9 22636628 22636737 -95225890 + L2 LINE L2 3148 3272 0 182 238 29 124 chr9 22636739 22636844 -95225783 + L2 LINE L2 3218 3312 -1 23 68 0 0 chr9 22637257 22637301 -95225326 + AT_rich Low_complexity Low_complexity 1 44 0 723 285 35 31 chr9 22637547 22637937 -95224690 + L1ME LINE L1 5395 5785 -377 28 29 0 0 chr9 22637998 22638033 -95224594 + AT_rich Low_complexity Low_complexity 1 35 0 270 282 0 0 chr9 22638226 22638311 -95224316 + L1MC4 LINE L1 7929 8013 -29 226 250 80 0 chr9 22638401 22638489 -95224138 + MER103 DNA DNA 36 130 -36 410 316 137 38 chr9 22639261 22639766 -95222861 + L2 LINE L2 2685 3264 -8 515 282 98 0 chr9 22640034 22640197 -95222430 - MIR SINE MIR -81 181 3 443 143 0 12 chr9 22640253 22640337 -95222290 + (TTCC)n Simple_repeat Simple_repeat 3 85 0 1975 147 3 0 chr9 22640360 22640660 -95221967 - AluSq SINE Alu -12 301 1 363 313 80 42 chr9 22641015 22641259 -95221368 + MIR SINE MIR 5 251 -11 364 258 45 76 chr9 22641286 22641418 -95221209 + MIR SINE MIR 134 261 -1 2214 85 0 4 chr9 22641891 22642172 -95220455 - AluSg SINE Alu -5 305 26 225 373 20 10 chr9 22642302 22642404 -95220223 + MIR SINE MIR 22 124 -84 235 200 0 0 chr9 22642572 22642612 -95220015 - MIR SINE MIR -5 257 218 351 302 8 43 chr9 22643853 22644001 -95218626 - MIR SINE MIR -46 162 20 4249 170 54 20 chr9 22645153 22646602 -95216025 + L1MB3 LINE L1 4675 6173 -10 269 333 0 56 chr9 22647362 22647470 -95215157 - L2 LINE L2 -1 3312 3211 198 103 0 0 chr9 22648004 22648033 -95214594 + (T)n Simple_repeat Simple_repeat 1 29 0 186 286 32 32 chr9 22649389 22649452 -95213175 + L2 LINE L2 3196 3258 -14 221 288 108 0 chr9 22649464 22649575 -95213052 - L3b LINE CR1 -242 1341 1219 385 255 28 117 chr9 22650593 22650840 -95211787 + LTR33 LTR ERVL 3 227 -294 487 271 47 0 chr9 22650895 22651024 -95211603 + LTR33 LTR ERVL 25 159 -362 542 288 78 78 chr9 22651515 22651963 -95210664 + L2 LINE L2 2865 3312 -1 403 352 21 0 chr9 22652148 22652290 -95210337 + MIR SINE MIR 9 153 -109 327 337 11 0 chr9 22652408 22652503 -95210124 + L2 LINE L2 3214 3309 -4 212 313 69 62 chr9 22652531 22652691 -95209936 - MIR SINE MIR -11 251 91 475 289 31 19 chr9 22653091 22653296 -95209331 + MIR SINE MIR 30 238 -24 207 0 0 0 chr9 22653661 22653684 -95208943 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 210 274 132 57 chr9 22654288 22654394 -95208233 + L2 LINE L2 3152 3265 -7 404 322 0 55 chr9 22655189 22655388 -95207239 + MER5A DNA MER1_type 2 189 0 685 161 32 0 chr9 22655751 22655875 -95206752 + FLAM_A SINE Alu 4 131 -2 1125 245 19 0 chr9 22656179 22656436 -95206191 - MIR SINE MIR 0 262 1 186 43 0 0 chr9 22657852 22657875 -95204752 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 1523 181 32 7 chr9 22657920 22658201 -95204426 + AluJb SINE Alu 3 290 -22 1847 37 0 0 chr9 22658329 22658545 -95204082 + AluY SINE Alu 96 311 0 2560 67 0 3 chr9 22659040 22659354 -95203273 - AluSq SINE Alu 0 313 1 270 150 0 70 chr9 22659621 22659721 -95202906 + (TTTTC)n Simple_repeat Simple_repeat 2 94 0 205 347 14 0 chr9 22660952 22661024 -95201603 + L2 LINE L2 3200 3272 0 387 60 0 0 chr9 22661487 22661537 -95201090 + (CA)n Simple_repeat Simple_repeat 1 50 0 315 246 33 25 chr9 22661971 22662093 -95200534 + L1ME LINE L1 5328 5450 -2358 27 0 0 0 chr9 22662109 22662136 -95200491 + AT_rich Low_complexity Low_complexity 1 27 0 233 266 44 26 chr9 22662220 22662333 -95200294 + L1ME LINE L1 5636 5750 -371 558 346 51 8 chr9 22662763 22663017 -95199610 + L3 LINE CR1 914 1178 -399 214 322 167 52 chr9 22663337 22663607 -95199020 + L3 LINE CR1 1272 1572 -5 431 287 86 6 chr9 22664449 22664623 -95198004 - MIR SINE MIR -14 248 61 1431 179 0 12 chr9 22664820 22665066 -95197561 + AluJb SINE Alu 39 281 -31 387 0 0 0 chr9 22665067 22665110 -95197517 + (CA)n Simple_repeat Simple_repeat 2 44 0 538 272 118 18 chr9 22665180 22665459 -95197168 - L1MC5 LINE L1 -49 7912 7606 848 258 83 17 chr9 22665718 22665958 -95196669 + MIR SINE MIR 6 261 -1 192 179 0 0 chr9 22665961 22666000 -95196627 + (CAT)n Simple_repeat Simple_repeat 1 39 0 294 333 46 9 chr9 22666513 22666621 -95196006 - L2 LINE L2 -8 3264 3153 538 236 74 69 chr9 22667713 22667916 -95194711 + MIR SINE MIR 18 221 -41 429 258 88 92 chr9 22667931 22668214 -95194413 + MLT1K LTR MaLR 305 586 -2 711 220 134 9 chr9 22668354 22668586 -95194041 + MIR SINE MIR 2 262 0 346 272 225 6 chr9 22668639 22668812 -95193815 + L2 LINE L2 3103 3313 0 218 306 12 56 chr9 22668803 22668906 -95193721 - MIR SINE MIR -107 101 16 * 383 361 42 24 chr9 22668981 22669147 -95193480 + MIR3 SINE MIR 16 184 -24 25 0 0 0 chr9 22670349 22670374 -95192253 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr9 22670791 22670812 -95191815 + AT_rich Low_complexity Low_complexity 1 21 0 417 273 136 11 chr9 22672471 22672647 -95189980 + MIR SINE MIR 29 226 -36 271 338 0 0 chr9 22673263 22673340 -95189287 + L2 LINE L2 3188 3264 -8 185 330 140 0 chr9 22674510 22674610 -95188017 - L2 LINE L2 -18 3254 3141 309 26 0 0 chr9 22675328 22675366 -95187261 + (TC)n Simple_repeat Simple_repeat 1 38 0 283 340 77 26 chr9 22675383 22675577 -95187050 - MIR SINE MIR -32 230 27 229 270 68 0 chr9 22675986 22676060 -95186567 - MER5A DNA MER1_type -77 112 34 21 36 0 0 chr9 22677398 22677426 -95185201 + AT_rich Low_complexity Low_complexity 1 28 0 39 0 0 0 chr9 22677935 22677974 -95184653 + AT_rich Low_complexity Low_complexity 1 39 0 284 227 11 0 chr9 22678039 22678127 -95184500 + (TA)n Simple_repeat Simple_repeat 1 89 0 24 96 0 0 chr9 22679138 22679211 -95183416 + AT_rich Low_complexity Low_complexity 1 73 0 317 196 21 21 chr9 22680617 22680714 -95181913 + (CGG)n Simple_repeat Simple_repeat 3 99 0 31 0 0 0 chr9 22684104 22684135 -95178492 + AT_rich Low_complexity Low_complexity 1 31 0 25 31 0 0 chr9 22686141 22686173 -95176454 + AT_rich Low_complexity Low_complexity 1 32 0 28 48 0 0 chr9 22686584 22686626 -95176001 + AT_rich Low_complexity Low_complexity 1 42 0 555 305 72 21 chr9 22686806 22687042 -95175585 - MIR SINE MIR -10 252 5 320 338 96 32 chr9 22687058 22687372 -95175255 - MARNA DNA Mariner -148 438 105 21 36 0 0 chr9 22689414 22689442 -95173185 + AT_rich Low_complexity Low_complexity 1 28 0 230 388 29 0 chr9 22690025 22690128 -95172499 - MIR SINE MIR -83 125 20 233 314 47 0 chr9 22690227 22690313 -95172314 - MER103 DNA DNA -74 92 3 607 194 50 14 chr9 22690403 22690542 -95172085 - MIR SINE MIR -11 251 108 976 124 214 0 chr9 22690594 22690772 -95171855 - MER20 DNA MER1_type 0 219 4 264 59 0 0 chr9 22691088 22691122 -95171505 + (CA)n Simple_repeat Simple_repeat 2 35 0 354 225 113 53 chr9 22691445 22691596 -95171031 + MIR SINE MIR 45 204 -58 229 320 39 13 chr9 22691946 22692024 -95170603 - L2 LINE L2 -24 3289 3210 384 200 83 8 chr9 22692064 22692184 -95170443 + MER117 DNA MER1_type 28 156 -41 861 212 71 9 chr9 22692204 22692430 -95170197 - MER112 DNA MER1_type -7 253 14 198 0 0 0 chr9 22694587 22694609 -95168018 + (A)n Simple_repeat Simple_repeat 1 22 0 24 53 0 0 chr9 22694809 22694847 -95167780 + AT_rich Low_complexity Low_complexity 1 38 0 180 0 0 0 chr9 22695235 22695255 -95167372 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 23 33 0 0 chr9 22695376 22695406 -95167221 + AT_rich Low_complexity Low_complexity 1 30 0 2282 138 8 8 chr9 22695840 22696218 -95166409 + L1PB3 LINE L1 5777 6154 0 2115 137 73 14 chr9 22696338 22696682 -95165945 - THE1B LTR MaLR 0 364 1 255 362 34 34 chr9 22697461 22697610 -95165017 + L2 LINE L2 2910 3058 -214 397 272 96 41 chr9 22697932 22698296 -95164331 - L1ME4a LINE L1 -22 6099 5716 36832 30 1 0 chr9 22698595 22703837 -95158790 - L1PA2 LINE L1 -2 6153 908 819 21 0 0 chr9 22703835 22703930 -95158697 - L1PA2 LINE L1 -6048 98 4 * 303 393 27 18 chr9 22704130 22704349 -95158278 - LTR33 LTR ERVL -230 291 71 404 288 28 34 chr9 22705201 22705378 -95157249 - MER5B DNA MER1_type -2 176 1 1134 205 24 139 chr9 22707786 22708195 -95154432 - MLT1A2 LTR MaLR -7 367 6 460 303 50 75 chr9 22708287 22708528 -95154099 - MIR SINE MIR -16 246 12 12199 125 36 41 chr9 22709527 22711624 -95151003 + Tigger1 DNA MER2_type 1 2087 -331 6158 218 84 3 chr9 22711634 22712874 -95149753 + L1PA13 LINE L1 1 1340 -5447 17864 176 29 41 chr9 22712875 22714177 -95148450 + L1PA13 LINE L1 1482 2798 -4016 5781 109 20 2 chr9 22714177 22715358 -95147269 + L1PA13 LINE L1 4939 6156 -7 17864 176 29 41 chr9 22715358 22718598 -95144029 + L1PA13 LINE L1 2798 5949 -865 2078 111 45 0 chr9 22718598 22718927 -95143700 + L1PA10 LINE L1 5812 6158 -10 17864 176 29 41 chr9 22718927 22719782 -95142845 + L1PA13 LINE L1 5949 6813 -1 1857 148 55 6 chr9 22719791 22720116 -95142511 + Tigger1 DNA MER2_type 2078 2418 0 221 301 106 9 chr9 22720234 22720347 -95142280 - L2 LINE L2 -7 3306 3183 391 296 60 50 chr9 22721011 22721210 -95141417 + MIR SINE MIR 21 221 -41 1268 211 28 102 chr9 22721317 22721711 -95140916 - MLT1A1 LTR MaLR 0 365 1 375 346 119 7 chr9 22722617 22722886 -95139741 + L2 LINE L2 2461 2759 -555 212 311 66 0 chr9 22723818 22723879 -95138748 + L2 LINE L2 3248 3312 -1 232 293 38 38 chr9 22723883 22724016 -95138611 + MIR SINE MIR 74 206 -56 21 36 0 0 chr9 22724674 22724702 -95137925 + AT_rich Low_complexity Low_complexity 1 28 0 200 244 22 0 chr9 22724702 22724747 -95137880 + (CATATA)n Simple_repeat Simple_repeat 5 50 0 232 178 0 0 chr9 22725067 22725114 -95137513 + (TTTA)n Simple_repeat Simple_repeat 1 47 0 1308 188 92 19 chr9 22726206 22726477 -95136150 - AluJo SINE Alu -11 291 1 26 0 0 0 chr9 22727191 22727217 -95135410 + AT_rich Low_complexity Low_complexity 1 26 0 462 289 32 32 chr9 22727349 22727539 -95135088 - L1MC/D LINE L1 -2007 5801 5612 1528 199 7 10 chr9 22727551 22727842 -95134785 + AluJo SINE Alu 1 290 -22 717 242 224 52 chr9 22728512 22728937 -95133690 + L2 LINE L2 2807 3304 -9 309 280 182 0 chr9 22729126 22729269 -95133358 + MIR SINE MIR 2 170 -92 432 296 62 40 chr9 22730555 22730731 -95131896 - MER5A DNA MER1_type 0 189 10 2196 104 0 0 chr9 22730731 22731018 -95131609 + AluSx SINE Alu 1 287 -25 208 188 31 0 chr9 22731018 22731082 -95131545 + (TA)n Simple_repeat Simple_repeat 1 66 0 286 331 86 43 chr9 22731608 22731747 -95130880 + MIR3 SINE MIR 3 147 -61 33 0 0 0 chr9 22732294 22732327 -95130300 + AT_rich Low_complexity Low_complexity 1 33 0 657 202 8 8 chr9 22732540 22732669 -95129958 + FLAM_A SINE Alu 1 129 -4 257 214 127 48 chr9 22732779 22732905 -95129722 - MER113 DNA MER1_type? -380 141 6 189 0 0 0 chr9 22734385 22734406 -95128221 + (A)n Simple_repeat Simple_repeat 1 21 0 350 361 130 40 chr9 22734708 22735670 -95126957 + L2 LINE L2 1686 2734 -580 193 419 0 0 chr9 22736106 22736199 -95126428 + L2 LINE L2 3208 3300 -13 315 49 0 0 chr9 22736267 22736308 -95126319 + (CA)n Simple_repeat Simple_repeat 2 42 0 220 163 41 20 chr9 22737967 22738016 -95124611 + L2 LINE L2 3262 3311 -2 261 307 67 53 chr9 22740956 22741106 -95121521 - MIR SINE MIR -48 214 63 402 56 28 14 chr9 22741365 22741436 -95121191 + (CA)n Simple_repeat Simple_repeat 2 73 0 227 311 137 38 chr9 22741542 22741754 -95120873 - MIR SINE MIR -10 252 20 1592 274 98 47 chr9 22741979 22742911 -95119716 - L1MEc LINE L1 -5382 1014 36 534 220 40 40 chr9 22743073 22743223 -95119404 + MIR SINE MIR 102 251 -11 222 303 30 0 chr9 22743766 22743832 -95118795 + MIR SINE MIR 195 262 0 211 243 9 140 chr9 22744337 22744444 -95118183 - L2 LINE L2 0 3313 3221 396 316 74 63 chr9 22744805 22745172 -95117455 + L2 LINE L2 1631 2001 -1313 2259 106 0 0 chr9 22745200 22745492 -95117135 - AluSq SINE Alu -21 292 1 3500 112 0 50 chr9 22745681 22746236 -95116391 + MER1A DNA MER1_type 1 527 0 332 233 117 10 chr9 22746295 22746398 -95116229 + L2 LINE L2 3200 3313 0 795 297 40 12 chr9 22746655 22746904 -95115723 - MIR SINE MIR -3 259 4 811 245 100 53 chr9 22747161 22747336 -95115291 - L1MC4 LINE L1 -165 7877 7712 2146 132 0 0 chr9 22747336 22747631 -95114996 - AluSx SINE Alu -15 297 3 811 245 100 53 chr9 22747631 22747794 -95114833 - L1MC4 LINE L1 -330 7712 7523 192 191 21 43 chr9 22748023 22748070 -95114557 + MIR3 SINE MIR 153 198 -10 250 312 0 65 chr9 22748939 22749016 -95113611 + Zaphod DNA AcHobo 2 73 -3958 1196 254 144 5 chr9 22749071 22749461 -95113166 + Zaphod DNA AcHobo 65 508 -3523 303 0 0 0 chr9 22749463 22749497 -95113130 + LTR7 LTR ERV1 415 448 -2 18000 81 21 28 chr9 22749499 22752148 -95110479 + HERVH LTR ERV1 1 2629 -5084 1201 179 61 0 chr9 22752142 22752435 -95110192 + HERVH LTR ERV1 2883 5819 -1894 * 2408 91 53 5 chr9 22752433 22752807 -95109820 + HERVH LTR ERV1 7322 7713 0 3039 63 5 10 chr9 22752807 22753221 -95109406 + LTR7 LTR ERV1 1 412 -38 1270 204 53 39 chr9 22753238 22753724 -95108903 + Zaphod DNA AcHobo 496 988 -3043 902 218 62 76 chr9 22753724 22753894 -95108733 - MER58A DNA MER1_type -2196 224 56 2451 83 0 3 chr9 22753894 22754206 -95108421 + AluY SINE Alu 1 311 0 902 218 62 76 chr9 22754206 22754260 -95108367 - MER58A DNA MER1_type -2364 56 3 3824 248 64 12 chr9 22754275 22756951 -95105676 + L1MEc LINE L1 27 2941 -3274 390 42 0 0 chr9 22757196 22757244 -95105383 + (TC)n Simple_repeat Simple_repeat 1 48 0 355 299 80 5 chr9 22758064 22758251 -95104376 - L1ME LINE L1 -299 5822 5622 293 184 184 10 chr9 22759912 22760010 -95102617 + L1MC4a LINE L1 5313 5427 -2381 686 278 137 32 chr9 22760028 22760137 -95102490 + L1MC4a LINE L1 5552 5648 -2160 2263 92 0 0 chr9 22760137 22760456 -95102171 + AluSg SINE Alu 1 319 0 686 278 137 32 chr9 22760456 22760687 -95101940 + L1MC4a LINE L1 5648 5929 -1879 22 88 0 0 chr9 22760823 22760880 -95101747 + AT_rich Low_complexity Low_complexity 1 57 0 279 321 33 87 chr9 22761643 22761827 -95100800 - MIR SINE MIR -66 196 23 195 42 0 0 chr9 22761876 22761900 -95100727 + (TAA)n Simple_repeat Simple_repeat 2 25 0 29 28 0 0 chr9 22762566 22762602 -95100025 + AT_rich Low_complexity Low_complexity 1 36 0 796 164 0 22 chr9 22762607 22762741 -95099886 + FLAM_C SINE Alu 1 131 -12 820 201 13 0 chr9 22762781 22762940 -95099687 - MER5A DNA MER1_type -14 175 15 180 0 0 0 chr9 22763224 22763244 -95099383 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 706 281 99 36 chr9 22763456 22763758 -95098869 + LTR16A LTR ERVL 113 433 -17 2411 102 0 0 chr9 22764461 22764774 -95097853 - AluSq SINE Alu 0 313 1 194 62 31 0 chr9 22766109 22766141 -95096486 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 207 0 0 0 chr9 22766281 22766304 -95096323 + (CA)n Simple_repeat Simple_repeat 2 24 0 399 245 151 14 chr9 22767220 22767359 -95095268 + MIR SINE MIR 92 249 -13 22 56 0 0 chr9 22767610 22767646 -95094981 + AT_rich Low_complexity Low_complexity 1 36 0 297 307 67 27 chr9 22767846 22768071 -95094556 + L1MC/D LINE L1 5574 5807 -2001 354 298 68 29 chr9 22769813 22770018 -95092609 - MLT1J1 LTR MaLR -233 213 1 383 303 134 31 chr9 22771046 22771300 -95091327 + L2 LINE L2 2221 2500 -814 323 180 33 0 chr9 22771692 22771753 -95090874 + MER5B DNA MER1_type 116 178 0 28 0 0 0 chr9 22771969 22771997 -95090630 + AT_rich Low_complexity Low_complexity 1 28 0 267 31 0 0 chr9 22772054 22772086 -95090541 + (T)n Simple_repeat Simple_repeat 1 32 0 1054 234 173 53 chr9 22772545 22773333 -95089294 + L1ME3A LINE L1 4510 5391 -755 356 283 37 11 chr9 22773328 22773538 -95089089 + L1ME3A LINE L1 5814 6028 -142 * 1903 155 37 3 chr9 22774493 22774789 -95087838 - AluJb SINE Alu -6 306 1 968 158 30 5 chr9 22775428 22775631 -95086996 + L1PA13 LINE L1 1591 1798 -5041 * 3526 228 12 5 chr9 22775630 22776648 -95085979 + L1PA13 LINE L1 2067 3096 -3753 1091 95 60 6 chr9 22776648 22776816 -95085811 + THE1B LTR MaLR 1 177 -187 2270 110 54 25 chr9 22776828 22777182 -95085445 + THE1B LTR MaLR 1 364 0 2613 153 21 0 chr9 22777274 22777692 -95084935 - MSTA LTR MaLR -1 427 1 4121 248 87 15 chr9 22779114 22780386 -95082241 + L1M4 LINE L1 2865 4283 -1863 252 0 0 0 chr9 22780386 22780414 -95082213 + (CA)n Simple_repeat Simple_repeat 1 28 0 4121 248 87 15 chr9 22780414 22780777 -95081850 + L1M4 LINE L1 4283 4618 -1528 14255 51 2 0 chr9 22780782 22783354 -95079273 - L1PA6 LINE L1 -1 6153 3578 214 260 158 8 chr9 22783852 22783979 -95078648 + L2 LINE L2 3104 3249 -64 23 33 0 0 chr9 22784215 22784245 -95078382 + AT_rich Low_complexity Low_complexity 1 30 0 1341 165 120 23 chr9 22785243 22785552 -95077075 - MER1B DNA MER1_type 0 339 1 218 222 0 48 chr9 22787454 22787510 -95075117 - MIR SINE MIR 0 262 208 1758 178 7 3 chr9 22787510 22787802 -95074825 - AluJb SINE Alu -19 293 1 2134 156 0 0 chr9 22788198 22788506 -95074121 - AluSx SINE Alu -4 308 1 523 124 152 9 chr9 22789023 22789128 -95073499 + MSTB1 LTR MaLR 286 405 -27 1134 254 32 17 chr9 22789154 22789500 -95073127 - MER87 LTR ERV1 -23 518 168 2702 201 34 16 chr9 22789765 22790331 -95072296 - MER6 DNA MER2_type -289 576 1 893 249 4 34 chr9 22792412 22792645 -95069982 - LTR49-int LTR ERV1 -4196 2135 1910 273 98 176 0 chr9 22792645 22792696 -95069931 + MER31A LTR ERV1 247 306 -179 1577 187 37 107 chr9 22792741 22793314 -95069313 - LTR49-int LTR ERV1 -4426 1905 1373 3156 179 14 17 chr9 22793749 22794384 -95068243 - MER39 LTR ERV1 0 707 75 2146 124 13 0 chr9 22794700 22795007 -95067620 - AluSx SINE Alu -1 311 1 25 83 0 0 chr9 22795009 22795069 -95067558 + AT_rich Low_complexity Low_complexity 1 60 0 369 157 11 22 chr9 22795075 22795164 -95067463 + (TA)n Simple_repeat Simple_repeat 2 89 0 1140 128 0 6 chr9 22796577 22796733 -95065894 - AluSq SINE Alu -71 242 88 238 296 129 8 chr9 22796739 22796871 -95065756 - MIR SINE MIR -33 229 82 2460 73 0 6 chr9 22796989 22797302 -95065325 - AluY SINE Alu 0 311 1 34 65 0 0 chr9 22797791 22797853 -95064774 + AT_rich Low_complexity Low_complexity 1 62 0 1208 121 59 4 chr9 22798193 22798557 -95064070 - MSTA LTR MaLR -1 427 1 264 370 133 0 chr9 22798559 22798829 -95063798 + L2 LINE L2 2027 2332 -982 24 67 0 0 chr9 22799296 22799341 -95063286 + AT_rich Low_complexity Low_complexity 1 45 0 814 186 64 108 chr9 22800233 22800558 -95062069 - MER106B DNA MER1_type -2 1057 754 1984 123 0 50 chr9 22800558 22800875 -95061752 + AluSg1 SINE Alu 1 301 -8 814 186 64 108 chr9 22800875 22800985 -95061642 - MER106B DNA MER1_type -305 754 641 21 36 0 0 chr9 22800998 22801026 -95061601 + AT_rich Low_complexity Low_complexity 1 28 0 1917 227 62 25 chr9 22801045 22801685 -95060942 + L1 LINE L1 3524 4187 -1959 2128 219 48 16 chr9 22802674 22803237 -95059390 - MER106B DNA MER1_type -476 583 3 186 302 16 32 chr9 22804171 22804234 -95058393 - MIR SINE MIR -99 163 102 364 258 0 0 chr9 22804992 22805085 -95057542 - MER31B LTR ERV1 0 466 374 2049 130 94 8 chr9 22805092 22805476 -95057151 - MSTA LTR MaLR -11 417 1 934 156 65 35 chr9 22805476 22805696 -95056931 - MER31B LTR ERV1 -88 378 152 3632 106 4 4 chr9 22806158 22806669 -95055958 - MER9 LTR ERVK 0 511 1 1403 134 4 11 chr9 22807961 22808223 -95054404 - L1MA4A LINE L1 0 6303 6044 28 48 0 0 chr9 22808491 22808533 -95054094 + AT_rich Low_complexity Low_complexity 1 42 0 542 211 10 0 chr9 22808591 22808695 -95053932 - L1M2c LINE L1 -5613 1176 1072 * 2764 152 10 35 chr9 22808690 22809269 -95053358 + L1 LINE L1 4166 4730 -1416 22 80 0 0 chr9 22809398 22809448 -95053179 + AT_rich Low_complexity Low_complexity 1 50 0 300 27 0 0 chr9 22811126 22811163 -95051464 + (CA)n Simple_repeat Simple_repeat 1 37 0 15638 143 9 6 chr9 22812109 22816451 -95046176 + L1P4 LINE L1 1335 5687 -481 2016 126 51 0 chr9 22816452 22816746 -95045881 + AluSx SINE Alu 1 309 -3 6524 210 42 3 chr9 22816746 22816836 -95045791 + L1P LINE L1 3501 3586 -2560 198 0 0 0 chr9 22816836 22816858 -95045769 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 6524 210 42 3 chr9 22816858 22818225 -95044402 + L1P LINE L1 3586 5014 -1132 553 180 51 73 chr9 22818227 22818405 -95044222 + L1MA9 LINE L1 6130 6303 -9 457 361 123 11 chr9 22818491 22819037 -95043590 + L2 LINE L2 1722 2328 -986 277 300 50 40 chr9 22819117 22819317 -95043310 + L2 LINE L2 3112 3313 0 2072 134 13 0 chr9 22821821 22822126 -95040501 - AluSc SINE Alu 0 309 1 1454 266 28 30 chr9 22824038 22824470 -95038157 - LTR47B LTR ERVL -2 441 11 199 54 54 0 chr9 22825535 22825572 -95037055 + T-rich Low_complexity Low_complexity 2 40 0 3624 209 10 10 chr9 22826266 22826970 -95035657 + L1M1 LINE L1 15 718 -6847 1990 108 11 14 chr9 22826970 22827256 -95035371 - THE1A LTR MaLR 0 355 71 203 299 124 10 chr9 22828673 22828770 -95033857 - MIR SINE MIR -38 224 117 43 64 0 0 chr9 22829407 22829485 -95033142 + AT_rich Low_complexity Low_complexity 1 78 0 267 338 168 20 chr9 22829618 22830059 -95032568 + L2 LINE L2 1817 2322 -992 21 82 0 0 chr9 22830402 22830451 -95032176 + AT_rich Low_complexity Low_complexity 1 49 0 209 217 0 0 chr9 22830549 22830595 -95032032 + (TAAA)n Simple_repeat Simple_repeat 4 49 0 2532 213 57 57 chr9 22831556 22832612 -95030015 - MER106B DNA MER1_type -1 1058 3 1734 201 41 27 chr9 22833303 22833856 -95028771 + MLT2A2 LTR ERVL 1 554 0 282 268 42 0 chr9 22834050 22834121 -95028506 - L2 LINE L2 -17 3296 3223 266 317 64 40 chr9 22836383 22836573 -95026054 + MLT1J2 LTR MaLR 263 448 -2 353 128 39 69 chr9 22838510 22838612 -95024015 - MER96B DNA MER1_type? -240 177 79 246 230 24 9 chr9 22838620 22838838 -95023789 + (TA)n Simple_repeat Simple_repeat 1 221 0 1394 162 49 4 chr9 22838851 22839116 -95023511 + MER49 LTR ERV1 4 280 -643 405 254 0 23 chr9 22839105 22839227 -95023400 + MER4E LTR ERV1 59 284 -588 * 1791 193 3 9 chr9 22839225 22839562 -95023065 + MER4D LTR ERV1 547 881 -22 2478 99 22 17 chr9 22839779 22840141 -95022486 - THE1B LTR MaLR 0 364 1 192 323 65 40 chr9 22840186 22840310 -95022317 - MIR SINE MIR -66 196 70 204 349 28 9 chr9 22840424 22840533 -95022094 + L2 LINE L2 3161 3271 -1 2262 105 3 6 chr9 22840713 22841026 -95021601 + AluSx SINE Alu 1 312 0 560 154 0 0 chr9 22842588 22842679 -95019948 + FRAM SINE Alu 49 139 -37 952 186 0 40 chr9 22846407 22846584 -95016043 + FRAM SINE Alu 1 169 -7 375 224 59 110 chr9 22846584 22846803 -95015824 - L1ME3A LINE L1 -19 6151 5944 503 278 119 6 chr9 22846806 22846982 -95015645 - MIR SINE MIR -38 224 29 655 64 11 0 chr9 22846986 22847080 -95015547 - AluSg/x SINE Alu -22 288 194 2238 155 56 12 chr9 22848468 22848882 -95013745 + Tigger2a DNA MER2_type 2 433 -1 206 256 13 0 chr9 22849011 22849089 -95013538 + (TA)n Simple_repeat Simple_repeat 2 80 0 201 74 0 0 chr9 22849392 22849419 -95013208 + (CA)n Simple_repeat Simple_repeat 2 28 0 4920 223 32 26 chr9 22849844 22851233 -95011394 - L1 LINE L1 -1853 4293 2897 2750 181 21 40 chr9 22852045 22852540 -95010087 + L1M1 LINE L1 3128 3630 -3935 1870 159 0 17 chr9 22852540 22852859 -95009768 + AluSx SINE Alu 1 314 0 2750 181 21 40 chr9 22852859 22853455 -95009172 + L1M1 LINE L1 3630 4220 -3345 584 218 24 0 chr9 22853458 22853623 -95009004 + L1M1 LINE L1 4675 4843 -2722 1627 196 16 68 chr9 22853727 22854167 -95008460 + L1M1 LINE L1 4851 5267 -2298 1850 101 12 0 chr9 22854187 22854444 -95008183 - L1MA2 LINE L1 -431 5873 5614 1543 185 0 0 chr9 22854444 22854729 -95007898 + L1MA3 LINE L1 6013 6299 -6 422 225 118 57 chr9 22854739 22855019 -95007608 + MER106B DNA MER1_type 761 1057 -2 38 22 0 0 chr9 22855987 22856032 -95006595 + AT_rich Low_complexity Low_complexity 1 45 0 269 307 158 13 chr9 22856509 22856737 -95005890 - L2 LINE L2 -978 2336 2076 576 163 0 54 chr9 22856807 22856936 -95005691 + FRAM SINE Alu 54 175 -1 21 36 0 0 chr9 22857228 22857256 -95005371 + AT_rich Low_complexity Low_complexity 1 28 0 302 281 116 30 chr9 22857882 22858046 -95004581 + MIR SINE MIR 82 259 -3 22 35 0 0 chr9 22859285 22859314 -95003313 + AT_rich Low_complexity Low_complexity 1 29 0 3260 170 64 24 chr9 22859926 22860567 -95002060 + MER39 LTR ERV1 2 707 0 318 246 93 71 chr9 22860622 22860805 -95001822 + MER39-int LTR ERV1 64 250 -6081 300 169 56 0 chr9 22860787 22860858 -95001769 + MER39-int LTR ERV1 1296 1370 -4961 * 1004 208 85 142 chr9 22861042 22861831 -95000796 + MER39-int LTR ERV1 1392 2135 -4196 1863 254 73 8 chr9 22861977 22862771 -94999856 - L1M4 LINE L1 -1158 5224 4379 5169 177 78 31 chr9 22863136 22864311 -94998316 - L1M4 LINE L1 -5136 1248 19 3626 241 70 36 chr9 22864578 22865571 -94997056 + L1MD3 LINE L1 6126 7084 -911 7583 29 1 0 chr9 22865571 22867167 -94995460 + L1PA3 LINE L1 4558 6155 0 3626 241 70 36 chr9 22867167 22867725 -94994902 + L1MD3 LINE L1 7084 7826 -169 2070 117 10 7 chr9 22867725 22868032 -94994595 - AluSc SINE Alu -1 308 1 3626 241 70 36 chr9 22868032 22868194 -94994433 + L1MD3 LINE L1 7826 7981 -14 25 0 0 0 chr9 22868234 22868259 -94994368 + AT_rich Low_complexity Low_complexity 1 25 0 1536 217 33 62 chr9 22868366 22868753 -94993874 + MER31B LTR ERV1 1 373 -93 2132 133 102 8 chr9 22868753 22869144 -94993483 + MSTA LTR MaLR 1 428 0 1536 217 33 62 chr9 22869144 22869236 -94993391 + MER31B LTR ERV1 373 466 0 215 335 225 5 chr9 22869922 22870113 -94992514 + MIR SINE MIR 19 251 -11 1852 127 45 38 chr9 22870223 22870514 -94992113 - AluSq SINE Alu -20 293 1 710 128 0 0 chr9 22870906 22871008 -94991619 - AluS SINE Alu -211 102 1 3032 197 61 53 chr9 22871293 22872339 -94990288 + MER106B DNA MER1_type 3 1057 -2 208 322 180 19 chr9 22873767 22873978 -94988649 - L2 LINE L2 -1003 2311 2067 345 47 0 0 chr9 22874058 22874101 -94988526 + (TG)n Simple_repeat Simple_repeat 2 44 0 183 156 0 0 chr9 22874101 22874133 -94988494 + (TA)n Simple_repeat Simple_repeat 2 33 0 316 178 56 56 chr9 22874133 22874223 -94988404 - L1MC4 LINE L1 -1339 6703 6614 1704 152 64 10 chr9 22874295 22874592 -94988035 + AluSq SINE Alu 1 313 0 2747 164 103 18 chr9 22874901 22875516 -94987111 + MER39 LTR ERV1 1 707 0 260 205 39 0 chr9 22875744 22875822 -94986805 + LTR49-int LTR ERV1 1302 1382 -4949 1661 188 33 79 chr9 22875957 22876478 -94986149 + LTR49-int LTR ERV1 1373 1869 -4462 293 62 188 0 chr9 22876542 22876590 -94986037 - MER31A LTR ERV1 -182 303 247 790 230 0 89 chr9 22876590 22876838 -94985789 + LTR49-int LTR ERV1 1910 2135 -4196 22 80 0 0 chr9 22877806 22877856 -94984771 + AT_rich Low_complexity Low_complexity 1 50 0 2737 196 51 7 chr9 22878945 22879155 -94983472 + MER6 DNA MER2_type 5 204 -661 366 42 0 0 chr9 22879155 22879203 -94983424 + (TG)n Simple_repeat Simple_repeat 2 49 0 2737 196 51 7 chr9 22879203 22879538 -94983089 + MER6 DNA MER2_type 204 574 -291 1153 230 28 12 chr9 22879855 22880181 -94982446 + MER87 LTR ERV1 211 541 0 491 135 154 10 chr9 22880187 22880291 -94982336 - MSTB1 LTR MaLR -28 404 286 1805 124 0 50 chr9 22880493 22880775 -94981852 - AluSx SINE Alu -15 297 30 1979 124 43 0 chr9 22881081 22881363 -94981264 + AluSx SINE Alu 11 304 -8 231 245 0 85 chr9 22881711 22881760 -94980867 + MIR SINE MIR 166 203 -59 1715 173 32 0 chr9 22881760 22882044 -94980583 + AluJb SINE Alu 1 293 -19 231 245 0 85 chr9 22882044 22882100 -94980527 + MIR SINE MIR 203 262 0 1965 128 28 0 chr9 22883648 22883770 -94978857 + AluSx SINE Alu 1 118 -194 537 30 0 0 chr9 22883770 22883837 -94978790 + (CA)n Simple_repeat Simple_repeat 2 68 0 1965 128 28 0 chr9 22883837 22884003 -94978624 + AluSx SINE Alu 118 297 -15 5403 215 37 38 chr9 22884134 22884720 -94977907 - L1 LINE L1 -1338 4808 4223 315 0 0 0 chr9 22884720 22884755 -94977872 + (TG)n Simple_repeat Simple_repeat 2 36 0 5403 215 37 38 chr9 22884755 22885923 -94976704 - L1 LINE L1 -1923 4223 3055 1471 86 14 265 chr9 22885925 22886411 -94976216 - THE1B LTR MaLR 0 364 1 401 276 126 6 chr9 22886415 22886589 -94976038 - L1 LINE L1 -3093 3053 2859 1908 141 41 0 chr9 22886863 22887154 -94975473 + AluSx SINE Alu 1 303 -9 183 225 169 42 chr9 22888102 22888173 -94974454 - L2 LINE L2 -9 3304 3225 2064 234 133 19 chr9 22888476 22889402 -94973225 + MER106B DNA MER1_type 3 1033 -26 180 77 0 0 chr9 22889425 22889451 -94973176 + (CA)n Simple_repeat Simple_repeat 1 26 0 25 75 0 0 chr9 22890428 22890481 -94972146 + AT_rich Low_complexity Low_complexity 1 53 0 180 302 16 0 chr9 22890961 22891024 -94971603 - L2 LINE L2 -982 2332 2269 3681 123 25 13 chr9 22891451 22892046 -94970581 - LTR43 LTR ERV1 0 602 1 27 62 0 0 chr9 22892185 22892233 -94970394 + AT_rich Low_complexity Low_complexity 1 48 0 5652 109 3 16 chr9 22892924 22894033 -94968594 - L1PA10 LINE L1 -4 6164 5031 4832 91 6 1 chr9 22894033 22894691 -94967936 - L1PA7 LINE L1 0 6154 5494 10867 108 16 104 chr9 22894691 22897012 -94965615 - L1PA10 LINE L1 -1107 5039 2923 6848 149 13 10 chr9 22897000 22898277 -94964350 + L1PA10 LINE L1 1668 2948 -3198 * 261 227 18 18 chr9 22899313 22899423 -94963204 + (TA)n Simple_repeat Simple_repeat 2 111 0 333 299 55 12 chr9 22899501 22899665 -94962962 - L1ME3A LINE L1 -5 6165 5995 746 294 48 4 chr9 22899724 22899955 -94962672 - MIR SINE MIR -21 241 1 254 399 28 21 chr9 22900608 22900751 -94961876 + MIR SINE MIR 19 162 -100 3061 147 11 0 chr9 22901919 22902462 -94960165 + L1PA12 LINE L1 2507 3055 -4526 185 228 70 0 chr9 22902653 22902710 -94959917 + L3b LINE CR1 1294 1354 -229 816 91 0 16 chr9 22903718 22903839 -94958788 - L1PA8 LINE L1 -4 6168 6050 3094 122 46 12 chr9 22903840 22904687 -94957940 - L1PA8 LINE L1 -351 5780 4907 180 340 162 15 chr9 22904713 22904972 -94957655 + L2 LINE L2 2027 2323 -991 207 146 0 0 chr9 22905473 22905514 -94957113 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 2730 205 70 24 chr9 22906555 22907448 -94955179 - MER106B DNA MER1_type -77 982 48 3208 32 0 0 chr9 22908687 22909096 -94953531 - L1PA8A LINE L1 -3248 2898 2490 * 18177 57 17 2 chr9 22909093 22911945 -94950682 + L1PA8A LINE L1 2885 5768 -363 953 64 0 0 chr9 22911958 22912083 -94950544 + L1PA8 LINE L1 6048 6172 0 7557 255 32 30 chr9 22913376 22916951 -94945676 - L1PA12 LINE L1 -4526 3055 6 6315 277 31 37 chr9 22917143 22920042 -94942585 - L1PA12 LINE L1 -5229 2352 6 660 243 21 0 chr9 22920752 22920987 -94941640 - L1M4 LINE L1 -3000 3146 2907 970 68 0 0 chr9 22920994 22921126 -94941501 - L1PA6 LINE L1 0 6154 6023 22 35 0 0 chr9 22921479 22921508 -94941119 + AT_rich Low_complexity Low_complexity 1 29 0 2748 217 68 23 chr9 22921658 22922578 -94940049 + MER106B DNA MER1_type 21 982 -77 34 0 0 0 chr9 22923629 22923663 -94938964 + AT_rich Low_complexity Low_complexity 1 34 0 21 57 0 0 chr9 22923860 22923895 -94938732 + AT_rich Low_complexity Low_complexity 1 35 0 215 329 68 27 chr9 22923896 22924042 -94938585 - L2 LINE L2 -38 3275 3124 27 73 0 0 chr9 22924750 22924805 -94937822 + AT_rich Low_complexity Low_complexity 1 55 0 1096 82 0 0 chr9 22924922 22925080 -94937547 + L1P LINE L1 4880 5037 -1109 22 35 0 0 chr9 22925383 22925412 -94937215 + AT_rich Low_complexity Low_complexity 1 29 0 3116 198 69 34 chr9 22925557 22926562 -94936065 + MER106B DNA MER1_type 16 1055 -4 197 143 0 20 chr9 22927526 22927575 -94935052 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 3285 106 39 4 chr9 22928347 22929190 -94933437 + L1PA8A LINE L1 4907 5777 -354 284 311 68 19 chr9 22929780 22929941 -94932686 + MIR SINE MIR 82 250 -12 1961 184 67 12 chr9 22930725 22931128 -94931499 + MER83 LTR ERV1 1 425 -23 2502 136 85 19 chr9 22932350 22932925 -94929702 - MER4B LTR ERV1 0 779 1 1310 278 24 7 chr9 22934988 22935405 -94927222 - MER57B LTR ERV1 -1 433 10 776 256 62 50 chr9 22935416 22935756 -94926871 - MER57-int LTR ERV1 -400 7137 6794 1492 216 0 34 chr9 22936034 22936330 -94926297 + AluJo SINE Alu 1 286 -26 382 274 26 13 chr9 22937559 22937791 -94924836 - MER57-int LTR ERV1 -1486 6051 4982 2240 270 29 41 chr9 22937811 22938569 -94924058 + L1PA13 LINE L1 1 749 -6038 6380 234 57 17 chr9 22938587 22941328 -94921299 + L1PA13 LINE L1 1323 4251 -2546 1431 206 90 0 chr9 22941368 22941645 -94920982 - AluJo SINE Alu -10 302 1 182 309 53 21 chr9 22942616 22942710 -94919917 + MIR SINE MIR 166 262 0 1528 33 0 0 chr9 22943657 22943838 -94918789 - L1PA4 LINE L1 0 6155 5975 7433 35 0 1 chr9 22943838 22945053 -94917574 + L1PA3 LINE L1 4962 6175 0 935 91 0 0 chr9 22945247 22945379 -94917248 + L1PA6 LINE L1 6023 6154 0 1047 244 40 9 chr9 22945379 22945805 -94916822 + L1 LINE L1 2900 3338 -2808 2308 70 0 3 chr9 22945806 22946092 -94916535 + AluY SINE Alu 1 285 -26 1746 28 0 5 chr9 22946093 22946304 -94916323 + L1PA3 LINE L1 5946 6155 0 678 25 0 0 chr9 22946496 22946576 -94916051 + (TTTC)n Simple_repeat Simple_repeat 2 81 0 871 80 0 0 chr9 22946579 22946691 -94915936 - L1PA8 LINE L1 -13 6159 6048 3476 108 16 3 chr9 22946694 22947584 -94915043 - L1PA8 LINE L1 -354 5777 4880 34 55 0 0 chr9 22947702 22947757 -94914870 + AT_rich Low_complexity Low_complexity 1 55 0 181 358 111 45 chr9 22947868 22948134 -94914493 + L2 LINE L2 1758 2005 -1309 1038 39 0 0 chr9 22948134 22948261 -94914366 - L1PA3 LINE L1 -3 6152 6026 181 358 111 45 chr9 22948261 22948525 -94914102 + L2 LINE L2 2005 2323 -991 217 340 61 27 chr9 22948618 22948765 -94913862 + L2 LINE L2 3124 3275 -38 217 197 0 30 chr9 22948994 22949060 -94913567 + (TAAA)n Simple_repeat Simple_repeat 1 64 0 2718 203 83 48 chr9 22950018 22951025 -94911602 - MER106B DNA MER1_type -1 1058 16 22 35 0 0 chr9 22951170 22951199 -94911428 + AT_rich Low_complexity Low_complexity 1 29 0 2361 120 11 0 chr9 22952633 22952992 -94909635 - MER57B LTR ERV1 -71 363 1 1229 237 34 3 chr9 22953419 22953744 -94908883 + L1MD3 LINE L1 7547 7881 -114 199 259 19 0 chr9 22954093 22954147 -94908480 + MIR SINE MIR 109 163 -99 1628 248 35 27 chr9 22954165 22954683 -94907944 - MLT2B3 LTR ERVL 0 520 3 2067 144 35 30 chr9 22955322 22955717 -94906910 - L1MB2 LINE L1 -2 6169 5773 2429 174 18 39 chr9 22955796 22956240 -94906387 - L1M3 LINE L1 -369 5814 5386 1781 186 28 6 chr9 22956240 22956595 -94906032 - MLT1A1 LTR MaLR 0 365 3 2429 174 18 39 chr9 22956595 22956849 -94905778 - L1M3 LINE L1 -797 5386 5128 905 166 0 0 chr9 22956948 22957111 -94905516 + L1M1 LINE L1 5497 5659 -645 1284 132 26 0 chr9 22957213 22957440 -94905187 + L1MA1 LINE L1 5610 5842 -460 338 102 0 194 chr9 22957656 22957705 -94904922 - MER50-int LTR ERV1 -1766 4497 4475 1881 155 3 39 chr9 22957705 22958014 -94904613 + AluSx SINE Alu 5 302 -10 338 102 0 194 chr9 22958014 22958062 -94904565 - MER50-int LTR ERV1 -1788 4475 4419 5028 166 46 32 chr9 22958065 22958429 -94904198 - MER50-int LTR ERV1 -2664 4541 4184 2634 94 16 8 chr9 22958429 22958801 -94903826 - THE1C LTR MaLR 0 375 1 5028 166 46 32 chr9 22958801 22959588 -94903039 - MER50-int LTR ERV1 -3021 4184 3374 1922 172 8 32 chr9 22959693 22960066 -94902561 - MER50-int LTR ERV1 -3514 1366 1003 6185 148 20 14 chr9 22960096 22961854 -94900773 - MER50-int LTR ERV1 -5356 1849 1 1342 153 18 0 chr9 22961888 22962111 -94900516 - MER50 LTR ERV1 -12 722 496 391 309 54 6 chr9 22963117 22963285 -94899342 + MIR SINE MIR 84 259 -3 282 56 0 0 chr9 22963598 22963634 -94898993 + (TA)n Simple_repeat Simple_repeat 1 36 0 24 0 0 0 chr9 22963711 22963735 -94898892 + AT_rich Low_complexity Low_complexity 1 24 0 279 309 64 67 chr9 22965820 22966118 -94896509 + L2 LINE L2 1996 2292 -1022 240 307 143 14 chr9 22966200 22966340 -94896287 + L2 LINE L2 3155 3312 -1 756 199 14 0 chr9 22966394 22966535 -94896092 + FRAM SINE Alu 1 143 -33 2169 90 0 4 chr9 22966625 22966903 -94895724 + AluSg SINE Alu 1 277 -33 217 0 61 0 chr9 22966903 22966936 -94895691 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 461 254 86 43 chr9 22967632 22967911 -94894716 + L1MC4a LINE L1 5716 6006 -1802 839 223 0 30 chr9 22970756 22970953 -94891674 + MER31B LTR ERV1 276 466 0 242 232 18 0 chr9 22971656 22971712 -94890915 + MIR SINE MIR 107 163 -99 2245 88 0 0 chr9 22973011 22973295 -94889332 - AluSc SINE Alu -25 284 1 2362 190 76 64 chr9 22973298 22974154 -94888473 + MER106B DNA MER1_type 151 1016 -43 288 127 14 28 chr9 22975164 22975235 -94887392 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 21 0 0 0 chr9 22975238 22975259 -94887368 + AT_rich Low_complexity Low_complexity 1 21 0 309 369 130 22 chr9 22975692 22976245 -94886382 - L2 LINE L2 -978 2336 1724 33 80 0 0 chr9 22976318 22976393 -94886234 + AT_rich Low_complexity Low_complexity 1 75 0 241 232 54 0 chr9 22976662 22976718 -94885909 + MIR SINE MIR 84 142 -66 334 231 105 42 chr9 22977139 22977282 -94885345 - L1M LINE L1 -752 5418 5267 1189 150 16 0 chr9 22977382 22977575 -94885052 - AluSg/x SINE Alu -11 301 106 1662 135 108 27 chr9 22977891 22978225 -94884402 + MER46B DNA MER2_type 1 236 0 24 53 0 0 chr9 22978519 22978557 -94884070 + AT_rich Low_complexity Low_complexity 1 38 0 773 169 0 0 chr9 22980012 22980136 -94882491 - FLAM_C SINE Alu -8 125 2 183 42 0 0 chr9 22980537 22980561 -94882066 + (TG)n Simple_repeat Simple_repeat 2 25 0 231 275 58 33 chr9 22981171 22981291 -94881336 + L1ME LINE L1 5521 5643 -478 27 49 0 0 chr9 22981890 22981931 -94880696 + AT_rich Low_complexity Low_complexity 1 41 0 2247 105 0 3 chr9 22983157 22983471 -94879156 - AluSq SINE Alu 0 313 1 1975 219 137 6 chr9 22983859 22984356 -94878271 + MLT1F1 LTR MaLR 1 562 -5 326 343 73 58 chr9 22985044 22985455 -94877172 + L2 LINE L2 2820 3236 -36 2034 138 10 0 chr9 22986044 22986342 -94876285 + AluSx SINE Alu 2 302 -10 1189 61 0 0 chr9 22987730 22987878 -94874749 + L1PA7 LINE L1 5994 6141 -13 678 25 0 0 chr9 22987881 22987961 -94874666 + (GAAA)n Simple_repeat Simple_repeat 2 81 0 8253 247 33 35 chr9 22989220 22992809 -94869818 - L1PA12 LINE L1 -4526 3055 6 370 258 19 123 chr9 22994273 22994533 -94868094 - MER8 DNA MER2_type 0 239 7 508 321 111 55 chr9 22994556 22995105 -94867522 - L2 LINE L2 -1019 2295 1716 934 160 73 14 chr9 22995186 22995405 -94867222 - L1MA9 LINE L1 -10 6302 6071 21 82 0 0 chr9 22995413 22995462 -94867165 + AT_rich Low_complexity Low_complexity 1 49 0 2074 194 27 82 chr9 22996348 22997017 -94865610 + L1MD3 LINE L1 7354 7985 -10 198 278 19 0 chr9 22997884 22997938 -94864689 + MIR SINE MIR 109 163 -99 185 296 56 14 chr9 22997940 22998011 -94864616 + L2 LINE L2 3223 3296 -17 2616 146 60 142 chr9 22998459 22999022 -94863605 - L1MB3 LINE L1 -32 6151 5543 2059 89 0 41 chr9 22999022 22999313 -94863314 + AluY SINE Alu 1 279 -32 216 0 0 0 chr9 22999316 22999340 -94863287 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2616 146 60 142 chr9 22999340 22999613 -94863014 - L1MB3 LINE L1 -642 5541 5380 824 211 0 7 chr9 22999616 22999768 -94862859 - MLT1A1 LTR MaLR -3 362 212 489 202 0 10 chr9 22999787 22999886 -94862741 - MLT1A1 LTR MaLR -274 100 3 8765 223 30 19 chr9 22999888 23001915 -94860712 - L1MB3 LINE L1 -762 5384 3323 2427 67 0 13 chr9 23001915 23002228 -94860399 - AluY SINE Alu -2 309 1 8765 223 30 19 chr9 23002228 23002650 -94859977 - L1MB3 LINE L1 -2823 3323 2907 927 91 0 0 chr9 23002657 23002789 -94859838 - L1PA6 LINE L1 0 6154 6023 3039 205 73 43 chr9 23004309 23005315 -94857312 + MER106B DNA MER1_type 21 1056 -3 203 179 0 0 chr9 23006279 23006318 -94856309 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 28 86 0 0 chr9 23006400 23006470 -94856157 + AT_rich Low_complexity Low_complexity 1 70 0 182 374 24 30 chr9 23006590 23006756 -94855871 - L2 LINE L2 -58 3255 3091 273 327 95 14 chr9 23007076 23007287 -94855340 - L2 LINE L2 -1364 1950 1723 434 88 25 0 chr9 23007911 23007991 -94854636 + (TAGA)n Simple_repeat Simple_repeat 1 82 0 1797 179 3 22 chr9 23008854 23009172 -94853455 - AluSx SINE Alu 0 312 1 6013 200 10 16 chr9 23009416 23010968 -94851659 - L1P5 LINE L1 -894 5252 3803 3531 86 6 0 chr9 23010966 23011469 -94851158 + L1P5 LINE L1 5270 5775 -376 * 342 98 0 0 chr9 23011470 23011521 -94851106 + (TA)n Simple_repeat Simple_repeat 2 52 0 234 0 0 59 chr9 23011523 23011557 -94851070 - MLT2B3 LTR ERVL -522 32 1 1943 177 25 54 chr9 23011559 23011784 -94850843 + L1MCb LINE L1 667 874 -5171 779 69 0 0 chr9 23011784 23011885 -94850742 + HY3 scRNA scRNA 1 101 0 1943 177 25 54 chr9 23011885 23012105 -94850522 + L1MCb LINE L1 874 1099 -4946 23 0 0 0 chr9 23012189 23012212 -94850415 + AT_rich Low_complexity Low_complexity 1 23 0 24 77 0 0 chr9 23012240 23012292 -94850335 + AT_rich Low_complexity Low_complexity 1 52 0 263 330 142 19 chr9 23012883 23013192 -94849435 - L2 LINE L2 -1143 2171 1825 180 0 0 0 chr9 23013262 23013282 -94849345 + (CAA)n Simple_repeat Simple_repeat 2 21 0 974 241 43 73 chr9 23013284 23013409 -94849218 - L1MEd LINE L1 -2944 3185 3058 2321 99 0 6 chr9 23013409 23013722 -94848905 - AluSx SINE Alu 0 312 2 974 241 43 73 chr9 23013722 23013983 -94848644 - L1MEd LINE L1 -3071 3058 2815 2091 106 55 0 chr9 23013983 23014276 -94848351 - AluSx SINE Alu -1 311 3 974 241 43 73 chr9 23014276 23014394 -94848233 - L1MEd LINE L1 -3314 2815 2695 418 242 57 78 chr9 23014455 23014893 -94847734 - L1MEd LINE L1 -3948 2362 1934 24 0 0 0 chr9 23014947 23014971 -94847656 + AT_rich Low_complexity Low_complexity 1 24 0 914 269 48 62 chr9 23014981 23015552 -94847075 - L1MEd LINE L1 -4618 1692 1092 183 42 0 0 chr9 23015737 23015761 -94846866 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1664 178 3 22 chr9 23016195 23016509 -94846118 + AluJb SINE Alu 1 308 -4 407 306 113 5 chr9 23016883 23017069 -94845558 + MIR SINE MIR 54 259 -3 213 244 24 0 chr9 23017300 23017382 -94845245 + (TTATA)n Simple_repeat Simple_repeat 1 84 0 191 141 59 24 chr9 23017385 23017470 -94845157 + (TA)n Simple_repeat Simple_repeat 1 88 0 267 31 0 0 chr9 23017492 23017524 -94845103 + (CA)n Simple_repeat Simple_repeat 1 32 0 1430 278 24 7 chr9 23019096 23019513 -94843114 - MER57B LTR ERV1 -1 433 10 879 256 62 50 chr9 23019524 23019864 -94842763 - MER57-int LTR ERV1 -400 7137 6794 1453 216 0 34 chr9 23020142 23020438 -94842189 + AluJo SINE Alu 1 286 -26 415 274 26 13 chr9 23021667 23021899 -94840728 - MER57-int LTR ERV1 -1486 6051 4982 6947 241 72 20 chr9 23021919 23025436 -94837191 + L1PA13 LINE L1 1 4251 -2546 1393 206 90 0 chr9 23025476 23025753 -94836874 - AluJo SINE Alu -10 302 1 186 309 53 21 chr9 23026724 23026818 -94835809 + MIR SINE MIR 166 262 0 1522 33 0 0 chr9 23027765 23027946 -94834681 - L1PA4 LINE L1 0 6155 5975 4548 22 0 0 chr9 23027946 23028774 -94833853 + L1P2 LINE L1 4962 5789 -366 1454 194 0 27 chr9 23029633 23029926 -94832701 + AluJo SINE Alu 13 297 -15 311 131 24 24 chr9 23030106 23030190 -94832437 + (TA)n Simple_repeat Simple_repeat 2 85 0 22 56 0 0 chr9 23031448 23031484 -94831143 + AT_rich Low_complexity Low_complexity 1 36 0 537 74 0 0 chr9 23031664 23031745 -94830882 + L1MA3 LINE L1 6225 6305 0 742 344 113 25 chr9 23031950 23032514 -94830113 - L2 LINE L2 -978 2336 1723 2061 96 17 24 chr9 23032581 23032873 -94829754 + AluSc SINE Alu 4 293 -16 753 161 40 0 chr9 23033449 23033598 -94829029 - L1MA6 LINE L1 -4 6296 6142 1605 184 7 7 chr9 23033602 23033901 -94828726 + AluJo SINE Alu 4 302 -10 29 28 0 0 chr9 23034020 23034056 -94828571 + AT_rich Low_complexity Low_complexity 1 36 0 764 263 130 24 chr9 23034201 23034539 -94828088 + MER87 LTR ERV1 168 541 0 4034 216 42 16 chr9 23034696 23035726 -94826901 - L1MC3 LINE L1 -1322 6463 5407 463 57 129 0 chr9 23039572 23039642 -94822985 + MADE1 DNA Mariner 1 79 -1 187 293 27 0 chr9 23041319 23041394 -94821233 - L2 LINE L2 -264 3008 2932 296 289 26 19 chr9 23041430 23041454 -94821173 - L1MA10 LINE L1 -10 6324 6301 2548 248 68 26 chr9 23041454 23041680 -94820947 - L1ME1 LINE L1 -23 6143 5928 1394 196 85 26 chr9 23041680 23042032 -94820595 + MLT1A2 LTR MaLR 2 374 0 2548 248 68 26 chr9 23042032 23043000 -94819627 - L1ME1 LINE L1 -238 5928 4861 8010 79 37 0 chr9 23043000 23044919 -94817708 - L1PA7 LINE L1 0 6154 4206 2548 248 68 26 chr9 23044919 23045415 -94817212 - L1ME1 LINE L1 -1305 4861 4387 3658 144 20 21 chr9 23045415 23046114 -94816513 + L1MA8 LINE L1 5594 6291 0 3463 194 31 14 chr9 23047363 23047640 -94814987 + L1 LINE L1 3883 4154 -1992 1376 42 0 5 chr9 23047640 23047854 -94814773 + (GAA)n Simple_repeat Simple_repeat 1 213 0 3463 194 31 14 chr9 23047854 23048370 -94814257 + L1 LINE L1 4154 4691 -1455 662 215 55 149 chr9 23048374 23048843 -94813784 + L1ME3A LINE L1 5743 6167 -3 1397 213 68 18 chr9 23049097 23049496 -94813131 + Charlie1 DNA MER1_type 2343 2761 0 227 214 71 71 chr9 23051100 23051184 -94811443 + LTR48B LTR ERV1 1 84 -560 * 1763 217 24 22 chr9 23051175 23051620 -94811007 + MER39 LTR ERV1 260 561 -4 3034 156 76 18 chr9 23051739 23052356 -94810271 + MER39B LTR ERV1 1 653 0 514 269 28 7 chr9 23053297 23053442 -94809185 - MIR SINE MIR -6 256 109 6174 203 14 8 chr9 23053494 23055820 -94806807 + L1PBa LINE L1 1855 4316 -2546 35 78 0 0 chr9 23055967 23056044 -94806583 + AT_rich Low_complexity Low_complexity 1 77 0 2732 219 132 27 chr9 23056338 23057479 -94805148 - L1M4c LINE L1 -2671 3973 2714 273 119 0 0 chr9 23057894 23057936 -94804691 + (TG)n Simple_repeat Simple_repeat 1 42 0 5623 238 66 25 chr9 23058169 23060479 -94802148 - L1M4c LINE L1 -4097 2549 16 315 302 9 9 chr9 23061449 23061555 -94801072 + MARNA DNA Mariner 174 279 -307 29 70 0 0 chr9 23061921 23061978 -94800649 + AT_rich Low_complexity Low_complexity 1 57 0 26 30 0 0 chr9 23062578 23062611 -94800016 + AT_rich Low_complexity Low_complexity 1 33 0 313 328 60 48 chr9 23062961 23063211 -94799416 - MIR SINE MIR 0 262 10 3564 236 28 21 chr9 23063313 23064284 -94798343 - Charlie1a DNA MER1_type -472 983 6 227 352 28 101 chr9 23064397 23064832 -94797795 + L2 LINE L2 2813 3215 -57 2400 46 6 56 chr9 23066144 23066467 -94796160 - AluY SINE Alu -4 307 1 2645 146 46 70 chr9 23067737 23067919 -94794708 - L1 LINE L1 -1658 4488 4303 5169 118 29 1 chr9 23067919 23068740 -94793887 - L1MA2 LINE L1 0 6304 5461 2645 146 46 70 chr9 23068740 23068957 -94793670 - L1 LINE L1 -1843 4303 4107 1935 153 0 3 chr9 23068957 23069251 -94793376 + AluSx SINE Alu 1 293 -19 2645 146 46 70 chr9 23069251 23069480 -94793147 - L1 LINE L1 -2039 4107 3874 183 257 69 40 chr9 23069529 23069630 -94792997 - MIR SINE MIR -151 111 8 767 220 0 0 chr9 23069896 23070046 -94792581 + MSTD LTR MaLR 236 385 -11 1464 214 12 3 chr9 23070053 23070399 -94792228 + L1MB2 LINE L1 4339 4687 -1459 704 154 0 0 chr9 23070402 23070506 -94792121 - AluSg/x SINE Alu -10 300 197 3260 190 86 17 chr9 23070507 23071895 -94790732 + L1MB2 LINE L1 4686 6168 -3 1496 216 0 3 chr9 23071902 23072185 -94790442 + AluJo SINE Alu 7 288 -24 582 282 57 43 chr9 23072255 23072464 -94790163 + MIR SINE MIR 16 227 -35 23 0 0 0 chr9 23072787 23072810 -94789817 + AT_rich Low_complexity Low_complexity 1 23 0 363 299 125 27 chr9 23073097 23073321 -94789306 + L1MC/D LINE L1 4569 4814 -1332 480 223 19 0 chr9 23073516 23073619 -94789008 + L1MC/D LINE L1 5446 5550 -783 182 219 109 47 chr9 23074492 23074556 -94788071 - L2 LINE L2 -4 3268 3201 560 220 30 8 chr9 23075009 23075141 -94787486 + MIR SINE MIR 107 241 -21 197 254 175 0 chr9 23075873 23075936 -94786691 + MIR SINE MIR 155 228 -34 3294 145 59 16 chr9 23076058 23076684 -94785943 - MER39B LTR ERV1 0 653 1 1759 233 18 14 chr9 23076804 23077242 -94785385 - MER39 LTR ERV1 -6 701 262 410 230 52 22 chr9 23078042 23078177 -94784450 - Charlie1 DNA MER1_type 0 2761 2623 38 89 0 0 chr9 23078433 23078534 -94784093 + AT_rich Low_complexity Low_complexity 1 101 0 6295 157 87 36 chr9 23078814 23079726 -94782901 + L1ME3A LINE L1 32 896 -5530 2127 117 3 7 chr9 23079726 23080035 -94782592 + AluSc SINE Alu 1 308 -1 6295 157 87 36 chr9 23080035 23080091 -94782536 + L1ME3A LINE L1 896 948 -5478 4003 171 74 12 chr9 23080091 23080836 -94781791 - MER54B LTR ERVL 0 793 3 6295 157 87 36 chr9 23080836 23081576 -94781051 + L1ME3A LINE L1 948 2000 -4426 1272 157 4 38 chr9 23081553 23081790 -94780837 + L1ME3A LINE L1 2238 2413 -4013 * 2244 94 3 3 chr9 23081790 23082087 -94780540 + AluY SINE Alu 1 297 -14 1272 157 4 38 chr9 23082087 23082152 -94780475 + L1ME3A LINE L1 2413 2479 -3947 414 106 59 0 chr9 23082432 23082627 -94780000 + (TA)n Simple_repeat Simple_repeat 1 206 0 5043 127 22 4 chr9 23082721 23083492 -94779135 - Tigger2 DNA MER2_type -1 2717 1933 12273 93 20 2 chr9 23083502 23085181 -94777446 - L1P3 LINE L1 -4734 1727 20 698 239 25 5 chr9 23085184 23085381 -94777246 - L1M2 LINE L1 -4177 2672 2472 * 3758 231 16 14 chr9 23085379 23086460 -94776167 + L1ME3A LINE L1 3189 4271 -2155 385 72 0 58 chr9 23086467 23086536 -94776091 + L1MC1 LINE L1 6269 6333 0 22 0 0 0 chr9 23086655 23086677 -94775950 + AT_rich Low_complexity Low_complexity 1 22 0 1594 165 57 6 chr9 23086748 23087064 -94775563 - L1MC3 LINE L1 -172 7613 7282 1230 252 101 83 chr9 23087196 23088280 -94774347 - L1M4 LINE L1 -840 5306 4204 1944 244 95 52 chr9 23088302 23088955 -94773672 + L1ME3A LINE L1 5607 6302 -148 1539 222 28 19 chr9 23088955 23089315 -94773312 + MLT1A1 LTR MaLR 1 363 -2 1944 244 95 52 chr9 23089315 23089461 -94773166 + L1ME3A LINE L1 6302 6440 -10 1145 209 77 7 chr9 23090759 23091056 -94771571 + MER33 DNA MER1_type 7 324 0 484 244 188 6 chr9 23091310 23091470 -94771157 + MIR SINE MIR 74 262 0 371 256 50 33 chr9 23092004 23092184 -94770443 - L1ME4a LINE L1 -11 6110 5928 27 62 0 0 chr9 23092269 23092317 -94770310 + AT_rich Low_complexity Low_complexity 1 48 0 276 264 115 44 chr9 23092586 23092815 -94769812 - L1MC4a LINE L1 -332 5822 5679 338 154 0 77 chr9 23092947 23093012 -94769615 - MLT1G LTR MaLR -299 291 232 1085 216 96 75 chr9 23093537 23093870 -94768757 + MER2 DNA MER2_type 6 345 0 39 60 0 0 chr9 23094937 23095004 -94767623 + AT_rich Low_complexity Low_complexity 1 67 0 483 271 17 18 chr9 23096046 23096222 -94766405 - MIR SINE MIR -14 248 76 680 183 0 122 chr9 23097826 23098072 -94764555 + L1ME4a LINE L1 5172 5387 -759 2612 242 63 45 chr9 23098801 23099475 -94763152 + L1ME1 LINE L1 5171 5870 -296 1971 137 10 0 chr9 23099475 23099775 -94762852 + AluSx SINE Alu 1 303 -9 2612 242 63 45 chr9 23099775 23100074 -94762553 + L1ME1 LINE L1 5870 6162 -4 2825 172 27 22 chr9 23100480 23101078 -94761549 - L1MB3 LINE L1 -2 6181 5581 572 246 68 35 chr9 23101144 23101204 -94761423 - MIR SINE MIR 0 262 205 198 0 0 0 chr9 23101204 23101226 -94761401 + (CTAG)n Simple_repeat Simple_repeat 1 22 0 554 82 12 0 chr9 23101227 23101312 -94761315 + (TAGA)n Simple_repeat Simple_repeat 3 88 0 572 246 68 35 chr9 23101312 23101479 -94761148 - MIR SINE MIR -56 206 32 252 0 0 0 chr9 23102160 23102188 -94760439 + (T)n Simple_repeat Simple_repeat 1 28 0 203 200 0 0 chr9 23102254 23102294 -94760333 + MIR SINE MIR 63 102 -160 1930 164 23 33 chr9 23102393 23102784 -94759843 + L1MA8 LINE L1 5902 6288 -3 264 257 14 0 chr9 23105230 23105300 -94757327 - MLT1K LTR MaLR -8 580 510 337 322 49 53 chr9 23106618 23106882 -94755745 - MLT1J LTR MaLR -4 507 245 24 53 0 0 chr9 23107431 23107469 -94755158 + AT_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr9 23107863 23107893 -94754734 + AT_rich Low_complexity Low_complexity 1 30 0 377 173 27 0 chr9 23107954 23108029 -94754598 + L1ME4a LINE L1 5591 5667 -454 201 39 0 0 chr9 23108045 23108071 -94754556 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 6662 30 4 0 chr9 23108085 23108877 -94753750 - L1PA4 LINE L1 0 6155 5361 23 78 0 0 chr9 23108982 23109033 -94753594 + AT_rich Low_complexity Low_complexity 1 51 0 356 294 149 23 chr9 23109075 23109296 -94753331 + L1ME4a LINE L1 5864 6112 -9 199 360 105 12 chr9 23109569 23109655 -94752972 + MIR SINE MIR 16 109 -99 576 277 59 31 chr9 23109815 23110048 -94752579 + MIR SINE MIR 21 262 0 180 111 0 0 chr9 23111151 23111178 -94751449 + (A)n Simple_repeat Simple_repeat 1 27 0 331 230 90 10 chr9 23111416 23111516 -94751111 - MER117 DNA MER1_type -49 148 41 186 222 0 0 chr9 23111597 23111633 -94750994 + MIR SINE MIR 111 146 -62 21 0 0 0 chr9 23111668 23111689 -94750938 + AT_rich Low_complexity Low_complexity 1 21 0 233 303 273 0 chr9 23112170 23112302 -94750325 - MIR SINE MIR -1 261 94 31 110 0 0 chr9 23113499 23113635 -94748992 + AT_rich Low_complexity Low_complexity 1 136 0 3618 88 8 6 chr9 23113645 23114142 -94748485 - L1PA11 LINE L1 -11 6163 5666 2156 115 0 3 chr9 23114274 23114586 -94748041 - AluSq SINE Alu 0 312 2 2060 166 11 11 chr9 23114859 23115208 -94747419 - MLT1A1 LTR MaLR 0 365 17 961 180 46 0 chr9 23115958 23116152 -94746475 + MER3 DNA MER1_type 1 203 -6 447 245 128 37 chr9 23116307 23116495 -94746132 + L2 LINE L2 3042 3246 -67 2305 149 49 77 chr9 23116516 23116622 -94746005 - LTR32 LTR ERVL 0 471 364 318 87 0 0 chr9 23116622 23116668 -94745959 + (TTTG)n Simple_repeat Simple_repeat 3 48 0 2305 149 49 77 chr9 23116668 23117031 -94745596 - LTR32 LTR ERVL -107 364 15 195 255 0 21 chr9 23117464 23117511 -94745116 + MER5B DNA MER1_type 91 136 -42 1602 169 178 11 chr9 23117833 23118199 -94744428 - MSTA LTR MaLR 0 428 2 342 231 32 128 chr9 23118200 23118325 -94744302 - MER5A DNA MER1_type -2 187 78 2139 113 3 25 chr9 23118325 23118644 -94743983 - AluSx SINE Alu 0 312 1 342 231 32 128 chr9 23118644 23118674 -94743953 - MER5A DNA MER1_type -111 78 47 733 98 62 0 chr9 23118674 23118786 -94743841 + MER57B LTR ERV1 1 119 -315 203 303 253 10 chr9 23118832 23118931 -94743696 + MER5B DNA MER1_type 13 135 -43 2114 115 10 0 chr9 23118972 23119284 -94743343 + MER57B LTR ERV1 120 434 0 422 284 148 39 chr9 23119335 23119490 -94743137 - MER5A DNA MER1_type -13 176 5 1548 240 59 10 chr9 23119571 23119979 -94742648 + MLT1C LTR MaLR 1 428 -39 9004 99 21 1 chr9 23120717 23121978 -94740649 + HSMAR1 DNA Mariner 1 1287 0 247 260 136 63 chr9 23122033 23122244 -94740383 + MIR SINE MIR 8 221 -24 23 54 0 0 chr9 23122559 23122596 -94740031 + AT_rich Low_complexity Low_complexity 1 37 0 378 0 0 0 chr9 23122626 23122668 -94739959 + (CA)n Simple_repeat Simple_repeat 1 42 0 400 92 77 0 chr9 23122668 23122733 -94739894 + MLT2B3 LTR ERVL 2 71 -483 2207 209 27 8 chr9 23122837 23123310 -94739317 + MLT2B3 LTR ERVL 75 513 -7 792 264 34 10 chr9 23124930 23125138 -94737489 + MIR SINE MIR 46 258 -4 336 320 138 29 chr9 23126439 23126714 -94735913 + L1ME2 LINE L1 131 435 -5961 1152 266 96 40 chr9 23127044 23127177 -94735450 + L1ME2 LINE L1 1738 1862 -4534 2409 32 0 7 chr9 23127177 23127458 -94735169 + AluY SINE Alu 1 279 -32 189 0 0 0 chr9 23127458 23127479 -94735148 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 1152 266 96 40 chr9 23127479 23128039 -94734588 + L1ME2 LINE L1 1861 2471 -3925 1435 229 145 30 chr9 23128047 23128571 -94734056 + L1ME2 LINE L1 3814 4397 -1818 3211 215 66 24 chr9 23128575 23129663 -94732964 + L1ME2 LINE L1 5108 6232 -1 256 259 25 114 chr9 23129918 23130057 -94732570 - L1MC/D LINE L1 -2311 5497 5380 2246 114 0 0 chr9 23130057 23130347 -94732280 + AluSx SINE Alu 1 290 -22 256 259 25 114 chr9 23130347 23130408 -94732219 - L1MC/D LINE L1 -2428 5380 5315 226 263 129 21 chr9 23130484 23130670 -94731957 - L1MC/D LINE L1 -1101 5045 4840 1278 72 0 0 chr9 23130911 23131064 -94731563 - AluY SINE Alu -158 153 1 237 264 94 53 chr9 23131093 23131358 -94731269 - L1MC/D LINE L1 -1541 4605 4330 23 0 0 0 chr9 23131367 23131390 -94731237 + AT_rich Low_complexity Low_complexity 1 23 0 298 292 91 32 chr9 23132597 23132751 -94729876 - MIR SINE MIR -66 196 34 24 0 0 0 chr9 23132809 23132833 -94729794 + AT_rich Low_complexity Low_complexity 1 24 0 495 198 0 0 chr9 23133429 23133520 -94729107 - AluJ/FLAM SINE Alu -221 91 1 868 139 0 29 chr9 23133634 23133771 -94728856 + FLAM_A SINE Alu 1 133 0 920 160 57 61 chr9 23134260 23134472 -94728155 - MER2 DNA MER2_type -134 211 1 397 234 186 28 chr9 23134961 23135106 -94727521 + MER96 DNA MER1_type? 2 169 -6 1440 233 70 29 chr9 23135810 23136735 -94725892 - L1ME1 LINE L1 -7 6159 5042 296 138 86 0 chr9 23137095 23137153 -94725474 - L2 LINE L2 0 3313 3251 299 265 0 61 chr9 23139327 23139425 -94723202 + MIR SINE MIR 54 145 -117 2151 119 0 0 chr9 23139791 23140093 -94722534 - AluJb SINE Alu -9 303 2 27 29 0 0 chr9 23140639 23140673 -94721954 + GC_rich Low_complexity Low_complexity 1 34 0 278 291 27 0 chr9 23140683 23140793 -94721834 - MIR SINE MIR -21 241 129 202 318 0 15 chr9 23140988 23141054 -94721573 + MER5A DNA MER1_type 111 175 -14 1728 131 29 35 chr9 23141651 23141963 -94720664 - AluSx SINE Alu -2 310 1 2397 161 0 43 chr9 23142109 23142526 -94720101 + MER47B DNA MER2_type 20 418 0 2321 109 0 0 chr9 23143958 23144269 -94718358 - AluSq SINE Alu -2 311 1 196 297 27 40 chr9 23144539 23144613 -94718014 + MIR SINE MIR 111 183 -79 319 353 25 17 chr9 23146109 23146228 -94716399 + MIR SINE MIR 25 144 -64 244 300 14 0 chr9 23146679 23146749 -94715878 + L2 LINE L2 3202 3272 0 2369 73 0 10 chr9 23148247 23148547 -94714080 + AluSc SINE Alu 1 297 -12 12997 45 7 0 chr9 23148738 23151133 -94711494 - L1PA5 LINE L1 -1 6153 3750 510 234 113 101 chr9 23152609 23152866 -94709761 - MIR SINE MIR 0 262 3 435 219 171 8 chr9 23152866 23152987 -94709640 + L2 LINE L2 3173 3313 0 374 233 142 25 chr9 23153809 23153929 -94708698 + MIR SINE MIR 129 262 0 214 182 45 0 chr9 23154356 23154400 -94708227 - MIR3 SINE MIR -6 202 157 296 360 20 30 chr9 23155419 23155619 -94707008 + L2 LINE L2 2829 3026 -246 282 254 91 18 chr9 23155899 23156009 -94706618 - L1ME4a LINE L1 -30 6091 5974 310 197 14 197 chr9 23157298 23157387 -94705240 + MIR SINE MIR 34 89 -173 2801 160 46 0 chr9 23157387 23157913 -94704714 - L1MB7 LINE L1 -7 6177 5628 310 197 14 197 chr9 23157913 23157965 -94704662 + MIR SINE MIR 89 149 -113 3236 194 135 22 chr9 23158010 23159027 -94703600 + L1 LINE L1 3975 5154 -992 2135 117 0 13 chr9 23159033 23159341 -94703286 - AluSx SINE Alu -8 304 1 329 244 126 8 chr9 23159343 23159470 -94703157 + L1ME4a LINE L1 5363 5504 -2304 998 181 33 0 chr9 23159686 23159868 -94702759 + MER5A DNA MER1_type 2 189 0 262 333 108 17 chr9 23160715 23160835 -94701792 + MIR SINE MIR 16 146 -62 215 266 144 40 chr9 23160974 23161049 -94701578 + L2 LINE L2 3028 3094 -219 3358 147 21 2 chr9 23161049 23161566 -94701061 + MER1A DNA MER1_type 1 527 0 215 266 144 40 chr9 23161566 23161663 -94700964 + L2 LINE L2 3094 3218 -95 1430 119 103 0 chr9 23162312 23162573 -94700054 + L1MA7 LINE L1 5998 6285 -6 238 238 114 9 chr9 23162796 23162901 -94699726 + L1ME4a LINE L1 5954 6069 -52 25 31 0 0 chr9 23162963 23162995 -94699632 + AT_rich Low_complexity Low_complexity 1 32 0 500 170 54 0 chr9 23163202 23163314 -94699313 - L1MD3 LINE L1 0 7995 7878 451 163 70 12 chr9 23165628 23165714 -94696913 - MLT1A2 LTR MaLR 0 374 284 272 209 46 13 chr9 23166166 23166467 -94696160 + (TA)n Simple_repeat Simple_repeat 1 291 -326 1581 183 21 3 chr9 23166467 23166757 -94695870 - AluJo SINE Alu -17 295 1 272 209 46 13 chr9 23166757 23166764 -94695863 + (TA)n Simple_repeat Simple_repeat 291 617 0 212 286 24 24 chr9 23166768 23166936 -94695691 + (TATATG)n Simple_repeat Simple_repeat 5 172 0 * 296 266 47 0 chr9 23166897 23167066 -94695561 + (TA)n Simple_repeat Simple_repeat 2 178 0 184 329 110 12 chr9 23167317 23167399 -94695228 - L2 LINE L2 -1889 1425 1336 207 0 0 0 chr9 23167419 23167442 -94695185 + (T)n Simple_repeat Simple_repeat 1 23 0 517 31 0 0 chr9 23167643 23167707 -94694920 + L1PA4 LINE L1 6089 6152 -3 24 0 0 0 chr9 23167707 23167731 -94694896 + AT_rich Low_complexity Low_complexity 1 24 0 6111 150 37 10 chr9 23171192 23173255 -94689372 - L1MA5A LINE L1 -5 6292 4166 347 368 0 0 chr9 23173250 23173356 -94689271 + L1M2c LINE L1 1072 1177 -5612 * 191 289 0 0 chr9 23173356 23173408 -94689219 + MIR SINE MIR 193 244 -18 1407 137 31 8 chr9 23173696 23173951 -94688676 + L1MA4A LINE L1 6043 6303 0 6760 112 30 17 chr9 23174321 23175378 -94687249 - MER11C LTR ERVK 0 1071 1 2107 88 56 0 chr9 23175810 23176095 -94686532 + AluY SINE Alu 4 304 -7 2152 129 0 0 chr9 23177707 23178035 -94684592 - AluSc SINE Alu 0 309 1 5504 160 30 59 chr9 23179200 23180491 -94682136 - L1MA5A LINE L1 0 6297 4971 2195 85 7 0 chr9 23180491 23180794 -94681833 + AluY SINE Alu 1 305 0 5504 160 30 59 chr9 23180794 23180968 -94681659 - L1MA5A LINE L1 -1326 4971 4794 7630 24 2 0 chr9 23180968 23182015 -94680612 + L1PA3 LINE L1 5107 6155 0 5504 160 30 59 chr9 23182015 23182730 -94679897 - L1MA5A LINE L1 -1503 4794 4185 477 254 11 2 chr9 23182721 23182849 -94679778 + L1M2c LINE L1 813 1256 -5533 * 192 286 0 0 chr9 23182849 23182905 -94679722 + MIR SINE MIR 193 248 -14 1281 148 25 12 chr9 23183193 23183436 -94679191 + L1MA4A LINE L1 6052 6297 -6 249 309 36 22 chr9 23184994 23185133 -94677494 - L2 LINE L2 -978 2336 2196 1109 174 20 48 chr9 23185667 23185889 -94676738 + L1MC/D LINE L1 5044 5271 -964 3242 106 27 2 chr9 23185889 23186400 -94676227 + L1MA3 LINE L1 5782 6305 0 225 0 0 0 chr9 23186403 23186428 -94676199 + (CA)n Simple_repeat Simple_repeat 2 26 0 195 42 0 0 chr9 23186427 23186451 -94676176 + (TA)n Simple_repeat Simple_repeat 2 25 0 * 1109 174 20 48 chr9 23186428 23186673 -94675954 + L1MC/D LINE L1 5273 5492 -743 3121 200 78 42 chr9 23187454 23188248 -94674379 + MER106B DNA MER1_type 21 860 -199 2208 129 0 0 chr9 23188248 23188558 -94674069 - AluSg SINE Alu 0 310 1 3121 200 78 42 chr9 23188558 23188762 -94673865 + MER106B DNA MER1_type 860 1055 -4 197 143 0 20 chr9 23189733 23189782 -94672845 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 446 167 0 0 chr9 23190866 23190938 -94671689 - MSTB LTR MaLR -137 289 218 1553 174 39 0 chr9 23190954 23191235 -94671392 + MSTA LTR MaLR 137 428 0 2075 194 2 12 chr9 23191236 23191659 -94670968 + L1PB3 LINE L1 3420 3838 -2308 * 5363 155 33 1 chr9 23191652 23193359 -94669268 + L1PB3 LINE L1 4407 6303 0 490 271 29 59 chr9 23193672 23193842 -94668785 + MER5A DNA MER1_type 4 168 -21 219 348 142 21 chr9 23193865 23194006 -94668621 + MER5A DNA MER1_type 27 184 -5 358 190 46 155 chr9 23194500 23194674 -94667953 + MIR SINE MIR 53 208 0 405 296 193 11 chr9 23195475 23195651 -94666976 + MIR SINE MIR 1 208 -54 359 317 32 0 chr9 23195663 23195786 -94666841 - L2 LINE L2 0 3313 3187 23 54 0 0 chr9 23195868 23195905 -94666722 + AT_rich Low_complexity Low_complexity 1 37 0 873 256 14 23 chr9 23196090 23196309 -94666318 + MIR SINE MIR 2 218 -44 382 207 0 35 chr9 23196260 23196347 -94666280 - MIR SINE MIR -44 218 135 * 2830 54 13 3 chr9 23196387 23196759 -94665868 + L1PA5 LINE L1 5775 6150 -4 412 142 65 7 chr9 23196850 23197005 -94665622 + (TA)n Simple_repeat Simple_repeat 2 165 0 952 204 44 40 chr9 23197029 23197279 -94665348 - MER63C DNA MER1_type -420 510 260 200 273 0 0 chr9 23197712 23197756 -94664871 - MIR3 SINE MIR -14 194 151 325 231 58 10 chr9 23198591 23198695 -94663932 + MER103 DNA DNA 58 166 0 776 344 122 34 chr9 23199106 23199470 -94663157 - L2 LINE L2 -6 3266 2936 1693 142 25 14 chr9 23199470 23199745 -94662882 + AluSx SINE Alu 21 298 -14 776 344 122 34 chr9 23199745 23200122 -94662505 - L2 LINE L2 -336 2936 2458 22 35 0 0 chr9 23200444 23200473 -94662154 + AT_rich Low_complexity Low_complexity 1 29 0 2073 122 0 7 chr9 23200767 23201062 -94661565 + AluSx SINE Alu 1 293 -19 1239 123 20 5 chr9 23201106 23201309 -94661318 - AluSg/x SINE Alu -2 310 105 5903 70 5 5 chr9 23201309 23202076 -94660551 + LTR17 LTR ERV1 1 767 -13 452 145 0 24 chr9 23202220 23202303 -94660324 + AluYb8 SINE Alu 54 134 -184 1967 81 96 0 chr9 23202303 23202574 -94660053 + AluY SINE Alu 1 297 -14 265 298 0 10 chr9 23203777 23203881 -94658746 + L1MCc LINE L1 1366 1468 -4955 501 287 112 56 chr9 23203896 23204684 -94657943 + L1MCc LINE L1 1665 2496 -4445 208 225 0 0 chr9 23205283 23205323 -94657304 + (TGGA)n Simple_repeat Simple_repeat 4 43 0 189 0 0 0 chr9 23205876 23205897 -94656730 + (TA)n Simple_repeat Simple_repeat 1 21 0 6108 28 0 0 chr9 23205898 23206609 -94656018 - L1PA5 LINE L1 -11 6143 5433 383 294 11 71 chr9 23206907 23207091 -94655536 + MLT1J LTR MaLR 25 197 -314 420 228 54 0 chr9 23208076 23208168 -94654459 + MER5A DNA MER1_type 9 105 -84 672 246 130 5 chr9 23209732 23209939 -94652688 + MER5C DNA MER1_type 14 246 -78 3481 127 30 24 chr9 23209945 23209986 -94652641 - LTR49 LTR ERV1 0 595 556 2253 117 15 6 chr9 23209986 23210319 -94652308 - MER1B DNA MER1_type -1 336 1 3481 127 30 24 chr9 23210319 23210868 -94651759 - LTR49 LTR ERV1 -39 556 1 231 132 26 0 chr9 23210896 23210934 -94651693 + MER5C DNA MER1_type 286 324 0 28 0 0 0 chr9 23211652 23211680 -94650947 + AT_rich Low_complexity Low_complexity 1 28 0 1732 183 3 3 chr9 23212315 23212616 -94650011 - AluJb SINE Alu -11 301 1 24 53 0 0 chr9 23212846 23212884 -94649743 + AT_rich Low_complexity Low_complexity 1 38 0 1040 222 31 111 chr9 23212947 23213335 -94649292 - LTR16A1 LTR ERVL 0 457 101 517 279 95 0 chr9 23214144 23214291 -94648336 - MER97c DNA MER1_type? -908 182 22 735 277 84 14 chr9 23214314 23214685 -94647942 - ERVL LTR ERVL -1148 4616 4184 942 278 49 35 chr9 23216516 23217159 -94645468 - L2 LINE L2 -4 3309 2431 290 252 7 116 chr9 23217988 23218135 -94644492 + MIR SINE MIR 83 213 -49 21 0 0 0 chr9 23218254 23218275 -94644352 + AT_rich Low_complexity Low_complexity 1 21 0 792 229 27 6 chr9 23218792 23218975 -94643652 + MER5A DNA MER1_type 1 187 -2 1896 188 45 47 chr9 23219874 23219909 -94642718 - L1MB7 LINE L1 -12 6172 6138 1867 151 9 103 chr9 23219909 23220334 -94642293 + MLT1B LTR MaLR 4 388 -2 1896 188 45 47 chr9 23220334 23220787 -94641840 - L1MB7 LINE L1 -46 6138 5685 321 299 0 13 chr9 23221643 23221720 -94640907 - L2 LINE L2 -31 3241 3166 233 378 32 13 chr9 23222086 23222242 -94640385 - L2 LINE L2 -222 3050 2892 289 305 205 26 chr9 23222690 23222880 -94639747 + MIR SINE MIR 2 225 -37 286 338 125 0 chr9 23222968 23223104 -94639523 + MIR SINE MIR 81 233 -29 328 313 121 23 chr9 23223409 23223674 -94638953 - LTR16A LTR ERVL 0 450 160 241 291 117 29 chr9 23223759 23223862 -94638765 - LTR16A LTR ERVL -338 112 1 881 272 0 44 chr9 23224577 23224827 -94637800 - MIR SINE MIR -3 259 21 255 343 29 58 chr9 23225043 23225215 -94637412 + MIR SINE MIR 46 212 -50 764 185 93 44 chr9 23225860 23226065 -94636562 - L2 LINE L2 0 3313 3099 1597 193 28 128 chr9 23226253 23226824 -94635803 - MER67D LTR ERV1 0 514 1 2091 136 131 13 chr9 23228611 23228994 -94633633 - MSTA LTR MaLR 0 428 1 285 29 0 0 chr9 23230140 23230174 -94632453 + (CA)n Simple_repeat Simple_repeat 2 35 0 244 321 87 82 chr9 23230174 23230358 -94632269 + L2 LINE L2 2864 3048 -224 234 290 16 0 chr9 23230748 23230810 -94631817 + L2 LINE L2 3198 3260 -12 1043 133 53 142 chr9 23230963 23231302 -94631325 + MER33 DNA MER1_type 16 324 0 2296 107 10 0 chr9 23232509 23232817 -94629810 + AluSx SINE Alu 1 311 -1 791 170 29 136 chr9 23233163 23233377 -94629250 + MLT1A2 LTR MaLR 184 369 -5 410 218 6 0 chr9 23234295 23234451 -94628176 + (TA)n Simple_repeat Simple_repeat 2 158 0 184 80 93 13 chr9 23234476 23234551 -94628076 + (TA)n Simple_repeat Simple_repeat 1 81 0 455 118 13 0 chr9 23234635 23234711 -94627916 + (TATATG)n Simple_repeat Simple_repeat 1 77 0 180 299 312 0 chr9 23236392 23236469 -94626158 - L2 LINE L2 -16 3297 3197 289 334 135 55 chr9 23236727 23237128 -94625499 - L2 LINE L2 -412 2902 2470 1969 147 3 3 chr9 23237209 23237508 -94625119 + AluJb SINE Alu 2 300 -12 329 360 98 39 chr9 23238462 23238851 -94623776 + L2 LINE L2 2356 2767 -547 512 303 11 11 chr9 23238913 23239088 -94623539 + L1ME LINE L1 3 177 -5893 334 217 0 0 chr9 23239677 23239737 -94622890 + MER58C DNA MER1_type 39 98 -117 215 229 16 0 chr9 23239739 23239800 -94622827 + GA-rich Low_complexity Low_complexity 3 64 0 319 250 50 0 chr9 23239814 23239914 -94622713 + MER58C DNA MER1_type 103 207 -8 407 319 65 29 chr9 23239917 23240427 -94622200 + L1ME LINE L1 557 1093 -4981 470 291 148 14 chr9 23240768 23240978 -94621649 - MIR SINE MIR -12 250 13 1754 180 83 21 chr9 23241047 23241420 -94621207 - MSTD LTR MaLR 0 396 1 3214 255 98 34 chr9 23241425 23242306 -94620321 - MSTD-int LTR MaLR -5 1730 794 314 292 92 79 chr9 23242947 23243040 -94619587 - MIR SINE MIR 0 262 172 2041 174 36 71 chr9 23243040 23243563 -94619064 + MLT1D LTR MaLR 1 505 0 314 292 92 79 chr9 23243563 23243709 -94618918 - MIR SINE MIR -90 172 20 2218 118 42 91 chr9 23243891 23244078 -94618549 + MSTA LTR MaLR 1 196 -232 1348 113 214 23 chr9 23244078 23244335 -94618292 + AluSg1 SINE Alu 1 306 -3 2218 118 42 91 chr9 23244335 23244347 -94618280 + MSTA LTR MaLR 196 207 -221 1885 105 3 82 chr9 23244347 23244652 -94617975 + AluSx SINE Alu 1 281 -31 2218 118 42 91 chr9 23244652 23244900 -94617727 + MSTA LTR MaLR 207 427 -1 255 211 128 20 chr9 23245924 23246034 -94616593 - MLT1E1 LTR MaLR -13 641 402 340 316 143 0 chr9 23246686 23246854 -94615773 + MIR SINE MIR 46 237 -25 293 253 184 0 chr9 23247364 23247451 -94615176 + L2 LINE L2 3169 3271 -1 25 51 0 0 chr9 23248075 23248114 -94614513 + AT_rich Low_complexity Low_complexity 1 39 0 31 58 0 0 chr9 23248195 23248247 -94614380 + AT_rich Low_complexity Low_complexity 1 52 0 358 266 122 47 chr9 23248382 23248596 -94614031 - L1ME4a LINE L1 -193 5928 5699 331 271 164 0 chr9 23248968 23249090 -94613537 - L2 LINE L2 0 3313 3172 1019 318 93 7 chr9 23249216 23249637 -94612990 - L2 LINE L2 -368 2946 2490 1433 214 0 11 chr9 23249646 23249922 -94612705 + AluJb SINE Alu 1 273 -39 806 98 0 8 chr9 23249927 23250050 -94612577 + (GGAA)n Simple_repeat Simple_repeat 3 124 0 3664 286 94 78 chr9 23250073 23252454 -94610173 - L2 LINE L2 -830 2484 67 1609 210 7 0 chr9 23253721 23254021 -94608606 + AluJo SINE Alu 3 304 -8 5810 31 0 0 chr9 23254648 23255325 -94607302 + L1PA5 LINE L1 5465 6141 -13 902 275 9 9 chr9 23255372 23255601 -94607026 - MIR SINE MIR 0 262 34 25 65 0 0 chr9 23257008 23257054 -94605573 + AT_rich Low_complexity Low_complexity 1 46 0 25 31 0 0 chr9 23257102 23257134 -94605493 + AT_rich Low_complexity Low_complexity 1 32 0 255 263 0 175 chr9 23257646 23257806 -94604821 + L2 LINE L2 3065 3196 -76 244 286 36 0 chr9 23257913 23257997 -94604630 + MIR SINE MIR 128 214 -48 216 0 0 0 chr9 23258206 23258230 -94604397 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 208 224 82 0 chr9 23260088 23260137 -94602490 + L2 LINE L2 3216 3268 -4 1864 161 25 6 chr9 23260250 23260573 -94602054 + MLT2D LTR ERVL 2 330 -84 278 278 0 46 chr9 23260575 23260683 -94601944 + (CATATA)n Simple_repeat Simple_repeat 2 104 0 293 125 0 0 chr9 23260684 23260724 -94601903 + MLT2D LTR ERVL 350 389 -8 517 284 0 0 chr9 23261851 23261996 -94600631 + FLAM_A SINE Alu 1 145 0 216 335 44 112 chr9 23262090 23262520 -94600107 + L2 LINE L2 2834 3234 -38 363 187 193 0 chr9 23262534 23262654 -94599973 - MIR SINE MIR -1 261 114 180 0 0 0 chr9 23262746 23262766 -94599861 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 273 98 0 0 chr9 23264299 23264340 -94598287 + (TTCA)n Simple_repeat Simple_repeat 4 44 0 248 182 18 18 chr9 23264543 23264598 -94598029 + GA-rich Low_complexity Low_complexity 4 58 0 2359 83 0 3 chr9 23264690 23264990 -94597637 - AluSp SINE Alu -14 299 1 2007 156 43 109 chr9 23265336 23265842 -94596785 + MER21A LTR ERV1 459 931 0 342 160 40 0 chr9 23265842 23265917 -94596710 + L1MA5 LINE L1 6223 6300 0 5350 160 31 23 chr9 23265942 23267435 -94595192 + L1MA7 LINE L1 4767 6267 -24 216 333 102 61 chr9 23267527 23268347 -94594280 + L2 LINE L2 222 1075 -2239 201 306 0 42 chr9 23268377 23268449 -94594178 + L2 LINE L2 1176 1244 -2070 523 167 7 90 chr9 23269672 23269816 -94592811 + MER94 DNA DNA 1 132 -2 656 118 20 0 chr9 23270717 23270819 -94591808 - MER39B LTR ERV1 -76 577 474 574 121 0 11 chr9 23270819 23270910 -94591717 - MER4A LTR ERV1 0 664 575 * 1051 84 11 13 chr9 23270909 23271202 -94591425 - MER4A LTR ERV1 -275 389 30 2994 103 14 52 chr9 23271231 23271728 -94590899 - MER39B LTR ERV1 -175 478 1 265 343 67 22 chr9 23271745 23271879 -94590748 + MIR SINE MIR 15 154 -108 243 241 96 12 chr9 23272128 23272211 -94590416 + MIR SINE MIR 102 191 -71 350 227 17 92 chr9 23274959 23275078 -94587549 + LTR37B LTR ERV1 1 110 -358 695 198 19 37 chr9 23275121 23275283 -94587344 + MER58 DNA MER1_type 8 166 -2254 26 0 0 0 chr9 23276517 23276543 -94586084 + GC_rich Low_complexity Low_complexity 1 26 0 234 296 71 10 chr9 23276693 23276791 -94585836 + MIR SINE MIR 159 262 0 21 57 0 0 chr9 23277182 23277217 -94585410 + GC_rich Low_complexity Low_complexity 1 35 0 468 0 0 0 chr9 23277336 23277388 -94585239 + (CA)n Simple_repeat Simple_repeat 2 53 0 382 277 31 82 chr9 23279056 23279215 -94583412 - MIR3 SINE MIR -9 199 49 1786 159 73 9 chr9 23279898 23280213 -94582414 + MLT1A1 LTR MaLR 25 359 -6 675 260 164 46 chr9 23280234 23280715 -94581912 - L2 LINE L2 -354 2960 2423 1964 143 0 0 chr9 23281232 23281518 -94581109 + AluSx SINE Alu 1 286 -26 479 291 57 6 chr9 23281821 23281979 -94580648 - MER20 DNA MER1_type -26 193 28 896 199 74 0 chr9 23282353 23282529 -94580098 + MER5A DNA MER1_type 1 189 0 708 162 69 123 chr9 23282591 23282653 -94579974 - MLT1D LTR MaLR -5 500 436 1804 155 7 30 chr9 23282653 23282957 -94579670 + AluJb SINE Alu 1 297 -15 708 162 69 123 chr9 23282957 23283098 -94579529 - MLT1D LTR MaLR -69 436 308 * 713 112 0 0 chr9 23283093 23283191 -94579436 + MSTB2 LTR MaLR 358 455 -2 1085 165 33 0 chr9 23283195 23283377 -94579250 + MLT1B LTR MaLR 152 339 -51 1030 185 189 37 chr9 23283378 23283675 -94578952 - MLT1D LTR MaLR -163 342 1 2444 82 0 0 chr9 23283708 23284011 -94578616 + AluY SINE Alu 1 303 -8 290 252 198 9 chr9 23284034 23284145 -94578482 + MER5B DNA MER1_type 5 136 -42 1246 195 25 4 chr9 23284425 23284661 -94577966 - MLT1B LTR MaLR 0 390 150 560 68 0 0 chr9 23284663 23284736 -94577891 - MSTB2 LTR MaLR -2 455 383 518 230 171 46 chr9 23284769 23285008 -94577619 - MSTB2 LTR MaLR -188 269 1 * 846 180 40 0 chr9 23285008 23285155 -94577472 - MLT1B LTR MaLR -236 154 2 241 231 161 39 chr9 23287019 23287149 -94575478 + MIR SINE MIR 40 185 -77 506 268 139 19 chr9 23287169 23287378 -94575249 + MIR SINE MIR 4 237 -25 235 188 0 31 chr9 23288514 23288578 -94574049 + T-rich Low_complexity Low_complexity 2 63 0 237 271 16 33 chr9 23289081 23289203 -94573424 + (TATATG)n Simple_repeat Simple_repeat 1 120 0 227 226 129 54 chr9 23290562 23290655 -94571972 + L2 LINE L2 717 816 -2498 2019 194 51 13 chr9 23290789 23291237 -94571390 - L1MDa LINE L1 -4255 2285 1821 790 255 21 43 chr9 23291629 23291890 -94570737 - MIR SINE MIR 0 262 12 639 305 136 36 chr9 23292092 23292569 -94570058 - L2 LINE L2 -2 3311 2776 808 254 47 2 chr9 23292600 23292831 -94569796 - L1ME3 LINE L1 0 6162 5935 2568 58 15 0 chr9 23292831 23293173 -94569454 + L1P LINE L1 2266 2612 -3534 9654 165 47 6 chr9 23293277 23296535 -94566092 + L1PBa LINE L1 1333 4728 -2134 740 78 48 0 chr9 23296536 23296639 -94565988 + AluY SINE Alu 2 109 -202 185 208 146 0 chr9 23296792 23296840 -94565787 - L2 LINE L2 -2 3311 3257 16126 72 14 0 chr9 23297117 23299220 -94563407 + L1P LINE L1 206 2338 -3808 275 265 108 48 chr9 23299326 23299492 -94563135 - MLT-int LTR MaLR -656 1079 904 275 292 92 79 chr9 23300256 23300349 -94562278 - MIR SINE MIR 0 262 172 2256 174 36 71 chr9 23300349 23300872 -94561755 + MLT1D LTR MaLR 1 505 0 275 292 92 79 chr9 23300872 23301018 -94561609 - MIR SINE MIR -90 172 20 1070 118 70 5 chr9 23301200 23301386 -94561241 + MSTA LTR MaLR 1 198 -230 1286 122 210 30 chr9 23301386 23301648 -94560979 + AluSg1 SINE Alu 1 309 0 2458 90 0 0 chr9 23301655 23301965 -94560662 + AluSq SINE Alu 1 310 -3 2185 120 0 0 chr9 23301967 23302259 -94560368 + AluSq SINE Alu 1 292 -21 221 185 167 0 chr9 23302363 23302417 -94560210 + L2 LINE L2 2125 2187 -1127 1211 235 129 70 chr9 23302418 23303293 -94559334 + L2 LINE L2 2370 3306 -7 1216 141 120 43 chr9 23303387 23303618 -94559009 - Charlie5 DNA MER1_type 0 2624 2359 2176 113 23 0 chr9 23303618 23303919 -94558708 - AluSx SINE Alu -4 308 1 1216 141 120 43 chr9 23303919 23304013 -94558614 - Charlie5 DNA MER1_type -265 2359 2274 591 152 54 9 chr9 23304037 23304149 -94558478 - MER3 DNA MER1_type -41 168 52 243 321 266 21 chr9 23304162 23304452 -94558175 + L2 LINE L2 2899 3259 -13 1937 123 14 20 chr9 23304883 23305175 -94557452 + AluSq SINE Alu 2 291 -22 1556 187 13 38 chr9 23306182 23306497 -94556130 + MLT1A1 LTR MaLR 1 307 -58 4384 193 26 19 chr9 23306597 23307711 -94554916 - L1P5 LINE L1 -534 6333 5211 5690 49 3 3 chr9 23307711 23308383 -94554244 - L1PA4 LINE L1 -1 6154 5483 4384 193 26 19 chr9 23308383 23308685 -94553942 - L1P5 LINE L1 -1656 5211 4913 3320 190 9 1 chr9 23308684 23309337 -94553290 - L1 LINE L1 -3261 3601 2944 * 1891 86 71 0 chr9 23309339 23309606 -94553021 + L1PBa LINE L1 2223 2508 -4355 1704 125 48 7 chr9 23309608 23311400 -94551227 - L1P5 LINE L1 -4603 2260 182 20658 50 6 1 chr9 23311500 23314802 -94547825 + L1PA5 LINE L1 2816 6131 -23 275 107 53 40 chr9 23314816 23314891 -94547736 + GA-rich Low_complexity Low_complexity 1 76 0 799 115 5 11 chr9 23314891 23315024 -94547603 - THE1C LTR MaLR -25 350 212 10380 144 20 3 chr9 23315159 23317495 -94545132 + L1PA14 LINE L1 3562 5936 -225 6665 214 29 32 chr9 23317597 23318151 -94544476 + L1P LINE L1 3111 3665 -2481 243 0 0 0 chr9 23318151 23318178 -94544449 + (CA)n Simple_repeat Simple_repeat 2 28 0 6665 214 29 32 chr9 23318178 23318732 -94543895 + L1P LINE L1 3665 4219 -1927 2152 41 4 0 chr9 23318732 23318977 -94543650 + L1PA5 LINE L1 5903 6148 -6 6665 214 29 32 chr9 23318977 23319539 -94543088 + L1P LINE L1 4219 4777 -1369 235 184 0 0 chr9 23319539 23319577 -94543050 - MSTA LTR MaLR 0 428 391 3327 138 52 0 chr9 23319585 23320106 -94542521 + L1P LINE L1 11 558 -5588 * 17718 51 15 1 chr9 23320104 23322334 -94540293 + L1P LINE L1 2607 4867 -1279 217 229 213 0 chr9 23322544 23322605 -94540022 - MIR3 SINE MIR -15 193 120 1504 193 35 3 chr9 23323000 23323290 -94539337 + AluJo SINE Alu 1 299 -13 515 144 22 0 chr9 23325120 23325210 -94537417 + AluY SINE Alu 218 309 -2 588 203 51 13 chr9 23325746 23325904 -94536723 - Charlie5 DNA MER1_type -35 2577 2414 255 311 40 0 chr9 23326032 23326106 -94536521 - L3 LINE CR1 -435 1142 1066 318 289 26 26 chr9 23326415 23326567 -94536060 - L1MC4a LINE L1 -1944 5864 5713 834 214 154 15 chr9 23326771 23328605 -94534022 + L1ME2 LINE L1 3674 5866 -298 1902 108 28 14 chr9 23328960 23329247 -94533380 - THE1C LTR MaLR 0 375 85 360 0 0 0 chr9 23379913 23379953 -94482674 + (GA)n Simple_repeat Simple_repeat 1 40 0 301 282 178 19 chr9 23380006 23380219 -94482408 - L1ME LINE L1 -276 5845 5599 1614 101 55 5 chr9 23380497 23380716 -94481911 - MER30 DNA MER1_type 0 230 1 25 90 0 0 chr9 23381993 23382060 -94480567 + AT_rich Low_complexity Low_complexity 1 67 0 369 0 0 0 chr9 23383101 23383142 -94479485 + (TG)n Simple_repeat Simple_repeat 2 42 0 293 68 23 0 chr9 23383794 23383838 -94478789 + (CCCCCA)n Simple_repeat Simple_repeat 4 48 0 233 281 191 56 chr9 23385691 23385958 -94476669 + L2 LINE L2 2951 3253 -60 274 130 43 0 chr9 23386233 23386279 -94476348 - MLT2D LTR ERVL 0 414 367 227 232 12 73 chr9 23386296 23386319 -94476308 + (TATATG)n Simple_repeat Simple_repeat 1 24 -53 1588 138 50 133 chr9 23386319 23386695 -94475932 - MER7A DNA MER2_type -2 344 2 227 232 12 73 chr9 23386695 23386753 -94475874 + (TATATG)n Simple_repeat Simple_repeat 24 77 0 366 80 0 0 chr9 23386756 23386806 -94475821 + (GA)n Simple_repeat Simple_repeat 1 50 0 1977 135 94 18 chr9 23386807 23387147 -94475480 - MLT2D LTR ERVL -48 366 1 383 328 77 8 chr9 23387619 23387804 -94474823 - MIR SINE MIR -56 206 16 264 279 182 36 chr9 23388325 23388618 -94474009 + L1MC4a LINE L1 5380 5720 -401 304 254 15 0 chr9 23388710 23388844 -94473783 + (TA)n Simple_repeat Simple_repeat 2 137 0 358 258 84 105 chr9 23389043 23389377 -94473250 + L1MC4a LINE L1 5776 6102 -19 311 267 50 51 chr9 23389384 23389509 -94473118 - MER5B DNA MER1_type -51 138 4 22 35 0 0 chr9 23390027 23390056 -94472571 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr9 23392201 23392226 -94470401 + AT_rich Low_complexity Low_complexity 1 25 0 368 232 196 0 chr9 23393317 23393455 -94469172 + MIR SINE MIR 84 248 -14 288 0 0 0 chr9 23394409 23394441 -94468186 + (TG)n Simple_repeat Simple_repeat 1 32 0 2035 111 14 10 chr9 23396376 23396688 -94465939 + AluSx SINE Alu 1 313 0 28 29 0 0 chr9 23397088 23397123 -94465504 + AT_rich Low_complexity Low_complexity 1 35 0 360 306 148 14 chr9 23400661 23400870 -94461757 - MIR SINE MIR -25 237 1 1881 157 106 52 chr9 23402235 23402604 -94460023 - MLT1B LTR MaLR -1 389 1 1448 219 38 98 chr9 23402656 23402750 -94459877 - L1MC5 LINE L1 -372 7589 7491 1462 197 3 20 chr9 23402750 23403049 -94459578 - AluJo SINE Alu -17 295 2 1448 219 38 98 chr9 23403049 23403454 -94459173 - L1MC5 LINE L1 -470 7491 7133 1738 143 24 31 chr9 23403454 23403763 -94458864 - AluJo SINE Alu 0 307 1 1448 219 38 98 chr9 23403763 23403900 -94458727 - L1MC5 LINE L1 -828 7133 6989 6170 27 1 1 chr9 23403912 23404587 -94458040 - L1PA3 LINE L1 -5 6150 5476 1202 219 40 18 chr9 23404590 23404919 -94457708 - L1M4 LINE L1 -1314 4832 4497 1056 41 0 0 chr9 23404936 23405058 -94457569 - L1PA3 LINE L1 0 6155 6034 3265 18 0 0 chr9 23405058 23405533 -94457094 - L1P2 LINE L1 -666 5489 5015 * 5040 29 7 0 chr9 23405524 23406112 -94456515 + L1P2 LINE L1 4415 5006 -1140 829 206 19 104 chr9 23406116 23406432 -94456195 - L1MC5 LINE L1 -966 6995 6707 1453 103 0 5 chr9 23406443 23406637 -94455990 + AluSg SINE Alu 1 193 -117 1728 81 0 0 chr9 23407351 23407562 -94455065 + AluSq SINE Alu 12 222 -91 2058 98 20 3 chr9 23407674 23407969 -94454658 + AluSx SINE Alu 1 300 -12 818 315 125 35 chr9 23408217 23408972 -94453655 - L2 LINE L2 -193 3079 2260 6772 86 6 15 chr9 23409177 23410558 -94452069 - L1PA13 LINE L1 -19 6144 4652 240 86 0 0 chr9 23410558 23410593 -94452034 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 6772 86 6 15 chr9 23410593 23411143 -94451484 - L1PA13 LINE L1 -1511 4652 4099 12598 205 48 37 chr9 23411163 23412750 -94449877 - L1PA12 LINE L1 -3205 4379 2812 1794 140 14 34 chr9 23412750 23413042 -94449585 + AluSx SINE Alu 1 286 -26 12598 205 48 37 chr9 23413042 23416454 -94446173 - L1PA12 LINE L1 -4772 2812 5 22 0 0 0 chr9 23416476 23416498 -94446129 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr9 23416523 23416566 -94446061 + AT_rich Low_complexity Low_complexity 1 43 0 438 302 24 0 chr9 23416945 23417071 -94445556 - L2 LINE L2 -7 3306 3178 27 73 0 0 chr9 23417480 23417535 -94445092 + AT_rich Low_complexity Low_complexity 1 55 0 376 239 261 16 chr9 23418281 23418587 -94444040 + L1MC4 LINE L1 6964 7344 -698 332 286 193 11 chr9 23419890 23420112 -94442515 + MIR SINE MIR 10 262 0 350 216 0 29 chr9 23420366 23420468 -94442159 + MER113 DNA MER1_type? 18 116 -405 307 182 45 15 chr9 23420583 23420649 -94441978 + MER113 DNA MER1_type? 453 520 -1 1347 236 130 25 chr9 23421005 23421404 -94441223 + MLT1E LTR MaLR 34 474 -119 213 324 0 15 chr9 23421597 23421665 -94440962 + CT-rich Low_complexity Low_complexity 2 68 0 2022 134 20 13 chr9 23422227 23422533 -94440094 + MER1B DNA MER1_type 32 339 0 410 315 97 28 chr9 23423096 23423312 -94439315 - MIR SINE MIR -12 250 20 909 243 23 18 chr9 23423967 23424185 -94438442 - MER58A DNA MER1_type -1 223 5 517 319 81 0 chr9 23424200 23424410 -94438217 + MIR SINE MIR 35 261 -1 249 324 90 95 chr9 23426250 23426472 -94436155 + L2 LINE L2 3048 3268 -4 214 195 0 0 chr9 23427622 23427663 -94434964 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 1759 202 116 7 chr9 23429069 23429490 -94433137 + MLT1C LTR MaLR 1 467 0 433 341 22 22 chr9 23429526 23429708 -94432919 - MIR SINE MIR -60 202 21 251 311 61 23 chr9 23430094 23430226 -94432401 - MIR SINE MIR -60 202 66 308 231 198 0 chr9 23431546 23431637 -94430990 - L2 LINE L2 0 3313 3205 227 150 25 0 chr9 23432435 23432475 -94430152 - L2 LINE L2 -2 3311 3271 308 223 95 40 chr9 23432918 23433066 -94429561 + MER113 DNA MER1_type? 1 156 -365 28 71 0 0 chr9 23433080 23433136 -94429491 + AT_rich Low_complexity Low_complexity 1 56 0 297 0 0 0 chr9 23434334 23434367 -94428260 + (TG)n Simple_repeat Simple_repeat 2 34 0 270 345 122 17 chr9 23434519 23434738 -94427889 - MIR SINE MIR -3 259 11 189 280 20 0 chr9 23435485 23435535 -94427092 - L2 LINE L2 -8 3264 3214 * 371 390 16 16 chr9 23435510 23435700 -94426927 - MIR SINE MIR -28 234 45 292 315 98 33 chr9 23436206 23436390 -94426237 + MIR SINE MIR 11 206 -56 204 191 0 43 chr9 23436452 23436499 -94426128 + CT-rich Low_complexity Low_complexity 4 48 0 1800 171 0 25 chr9 23437075 23437390 -94425237 - AluJb SINE Alu -5 307 1 431 296 70 25 chr9 23438086 23438285 -94424342 + MIR SINE MIR 45 252 -10 276 335 177 5 chr9 23438965 23439174 -94423453 + MIR SINE MIR 18 262 0 228 317 32 54 chr9 23439465 23439651 -94422976 - MIR SINE MIR -31 231 50 274 305 63 32 chr9 23441525 23441620 -94421007 + L2 LINE L2 3175 3272 0 400 239 34 0 chr9 23443276 23443364 -94419263 + MIR SINE MIR 76 166 -96 * 1067 228 28 39 chr9 23443351 23443605 -94419022 - MIR SINE MIR 0 262 12 285 379 122 2 chr9 23443744 23443965 -94418662 - MIR SINE MIR -2 260 16 255 107 48 48 chr9 23443967 23444070 -94418557 + T-rich Low_complexity Low_complexity 3 105 0 1865 98 106 4 chr9 23444083 23444348 -94418279 - AluSx SINE Alu -20 292 1 22 56 0 0 chr9 23444354 23444390 -94418237 + AT_rich Low_complexity Low_complexity 1 36 0 29 0 0 0 chr9 23444406 23444435 -94418192 + AT_rich Low_complexity Low_complexity 1 29 0 846 157 24 0 chr9 23444439 23444605 -94418022 - L1MA7 LINE L1 -9 6282 6113 194 222 0 0 chr9 23445088 23445124 -94417503 - L2 LINE L2 -15 3298 3263 1703 95 52 128 chr9 23445335 23445662 -94416965 - AluSg SINE Alu -7 303 2 979 285 107 38 chr9 23445820 23446353 -94416274 + L2 LINE L2 1961 2530 -784 39 22 0 0 chr9 23446420 23446466 -94416161 + AT_rich Low_complexity Low_complexity 1 46 0 25 31 0 0 chr9 23446688 23446720 -94415907 + AT_rich Low_complexity Low_complexity 1 32 0 1950 133 10 3 chr9 23446822 23447115 -94415512 + AluJb SINE Alu 1 295 -17 1474 122 0 5 chr9 23447129 23447334 -94415293 + AluSq SINE Alu 1 204 -109 1256 121 0 0 chr9 23447335 23447508 -94415119 + AluSq SINE Alu 129 301 -12 590 263 34 6 chr9 23447855 23448030 -94414597 - MLT1I LTR MaLR 0 409 230 2339 97 26 3 chr9 23448038 23448380 -94414247 - THE1A LTR MaLR 0 355 6 11622 100 9 0 chr9 23448385 23449951 -94412676 - THE1A-int LTR MaLR 0 1580 1 2579 92 3 14 chr9 23449951 23450310 -94412317 - THE1A LTR MaLR 0 355 1 246 265 15 0 chr9 23450373 23450441 -94412186 - MLT1J1 LTR MaLR -284 162 94 21 0 0 0 chr9 23450955 23450976 -94411651 + AT_rich Low_complexity Low_complexity 1 21 0 378 315 43 19 chr9 23450978 23451140 -94411487 + MIR SINE MIR 41 206 -56 311 270 87 56 chr9 23451976 23452102 -94410525 + MIR SINE MIR 24 153 -109 225 0 0 0 chr9 23452292 23452317 -94410310 + (GA)n Simple_repeat Simple_repeat 2 26 0 209 363 131 29 chr9 23452637 23452951 -94409676 - L2 LINE L2 -1905 1409 1064 1539 174 82 14 chr9 23455506 23455788 -94406839 - AluJo SINE Alu -11 301 1 226 86 0 0 chr9 23455919 23455954 -94406673 - L1P1 LINE L1 -427 5728 5694 3640 43 2 0 chr9 23456077 23456520 -94406107 + L1PA5 LINE L1 5711 6154 0 357 82 0 0 chr9 23456819 23456868 -94405759 + (CA)n Simple_repeat Simple_repeat 2 50 0 272 254 0 0 chr9 23456949 23457008 -94405619 + L2 LINE L2 3209 3267 -5 387 324 75 72 chr9 23457523 23457884 -94404743 - L2 LINE L2 -69 3203 2842 638 91 41 41 chr9 23458802 23458815 -94403812 - AluSg/x SINE Alu 0 310 298 1638 172 9 23 chr9 23458815 23459158 -94403469 - L1MA6 LINE L1 -1 6299 5962 638 91 41 41 chr9 23459158 23459265 -94403362 - AluSg/x SINE Alu -11 299 190 421 314 62 119 chr9 23459549 23459919 -94402708 - L2 LINE L2 0 3272 2924 331 325 96 10 chr9 23460203 23460412 -94402215 + MLT1K LTR MaLR 315 541 -47 387 291 104 15 chr9 23460431 23460565 -94402062 - MIR3 SINE MIR -38 170 25 619 86 0 0 chr9 23460581 23460674 -94401953 - AluY SINE Alu 0 311 219 204 278 252 46 chr9 23460804 23460955 -94401672 + MIR3 SINE MIR 21 202 -6 207 225 0 0 chr9 23461065 23461105 -94401522 - L2 LINE L2 -13 3300 3261 286 284 97 30 chr9 23461750 23461884 -94400743 + MIR SINE MIR 33 175 -87 257 305 48 9 chr9 23462104 23462209 -94400418 + MIR SINE MIR 59 167 -95 1848 157 17 14 chr9 23463161 23463455 -94399172 - AluJb SINE Alu -16 296 2 232 250 0 29 chr9 23464207 23464275 -94398352 - MER113 DNA MER1_type? -3 518 453 533 239 91 10 chr9 23464278 23464487 -94398140 - MER113 DNA MER1_type? -295 226 1 233 368 62 28 chr9 23464676 23464820 -94397807 - L2 LINE L2 -160 3112 2964 2270 102 10 3 chr9 23465343 23465647 -94396980 - AluSq SINE Alu -7 306 1 270 53 13 133 chr9 23465737 23465812 -94396815 - Charlie5 DNA MER1_type -38 2574 2509 1032 228 3 81 chr9 23465835 23465976 -94396651 - L1MA9 LINE L1 -89 6223 6072 2053 122 30 13 chr9 23465976 23466279 -94396348 - AluJb SINE Alu -4 308 1 1032 228 3 81 chr9 23466279 23466518 -94396109 - L1MA9 LINE L1 -240 6072 5873 888 206 109 0 chr9 23466521 23466788 -94395839 - Charlie5 DNA MER1_type -83 2529 2234 295 278 0 0 chr9 23466817 23466907 -94395720 - Charlie5 DNA MER1_type -2514 98 9 528 296 100 98 chr9 23467253 23467632 -94394995 - L3 LINE CR1 -288 1289 910 386 235 174 45 chr9 23467849 23467981 -94394646 - MER5A DNA MER1_type -1 188 40 2106 107 0 71 chr9 23468496 23468832 -94393795 + AluSx SINE Alu 1 312 0 21 36 0 0 chr9 23470570 23470598 -94392029 + AT_rich Low_complexity Low_complexity 1 28 0 223 250 0 47 chr9 23470991 23471055 -94391572 + MIR SINE MIR 75 135 -127 403 313 39 0 chr9 23471662 23471790 -94390837 - MIR SINE MIR -82 180 48 519 282 144 0 chr9 23472362 23472550 -94390077 - MIR SINE MIR 0 262 48 285 326 49 71 chr9 23472759 23472943 -94389684 - MER5A DNA MER1_type 0 189 10 221 272 281 0 chr9 23472962 23473186 -94389441 - L2 LINE L2 -816 2498 2212 429 323 72 20 chr9 23473351 23473546 -94389081 - MIR SINE MIR -37 225 21 2469 46 0 7 chr9 23474732 23475035 -94387592 + AluY SINE Alu 1 301 -10 281 357 41 6 chr9 23475317 23475488 -94387139 + MIR SINE MIR 36 212 -50 207 100 0 0 chr9 23476033 23476063 -94386564 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 885 276 138 27 chr9 23476250 23476800 -94385827 + MLT1L LTR MaLR 1 611 -4 1262 247 68 9 chr9 23476958 23477412 -94385215 + MER113 DNA MER1_type? 4 484 -37 240 167 0 0 chr9 23477714 23477762 -94384865 + (CA)n Simple_repeat Simple_repeat 1 48 0 1630 160 7 65 chr9 23478734 23479040 -94383587 - AluJb SINE Alu -20 292 5 36118 41 5 0 chr9 23479125 23484601 -94378026 - L1PA4 LINE L1 -2 6153 656 5146 43 9 1 chr9 23484599 23485293 -94377334 - L1P LINE L1 -3208 2938 2240 * 239 290 20 40 chr9 23485327 23485427 -94377200 - L2 LINE L2 -241 3031 2934 269 371 10 10 chr9 23485534 23485631 -94376996 - L2 LINE L2 0 3272 3176 406 257 30 10 chr9 23485638 23485739 -94376888 - L2 LINE L2 -31 3282 3180 396 343 34 56 chr9 23485787 23486111 -94376516 + L2 LINE L2 2661 2977 -337 335 236 0 9 chr9 23487454 23487564 -94375063 + (TATG)n Simple_repeat Simple_repeat 2 110 0 28 0 0 0 chr9 23487766 23487794 -94374833 + AT_rich Low_complexity Low_complexity 1 28 0 323 324 174 10 chr9 23487910 23488117 -94374510 - MIR SINE MIR -20 242 2 553 328 117 49 chr9 23488170 23488762 -94373865 - L2 LINE L2 -3 3269 2619 566 201 33 76 chr9 23488762 23488946 -94373681 + MER104 DNA MER2_type 2 177 -3 553 328 117 49 chr9 23488946 23488984 -94373643 - L2 LINE L2 -653 2619 2585 3213 216 38 20 chr9 23489442 23490331 -94372296 - L1MB8 LINE L1 -6 6172 5268 333 0 0 0 chr9 23490960 23490997 -94371630 + (CA)n Simple_repeat Simple_repeat 2 38 0 589 174 87 127 chr9 23491646 23491922 -94370705 - MLT1C LTR MaLR 0 467 203 185 233 23 0 chr9 23492209 23492252 -94370375 - MIR3 SINE MIR -3 205 162 434 18 18 0 chr9 23492426 23492481 -94370146 + (TG)n Simple_repeat Simple_repeat 1 56 0 21 57 0 0 chr9 23492916 23492951 -94369676 + AT_rich Low_complexity Low_complexity 1 35 0 279 79 0 0 chr9 23493935 23493973 -94368654 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 253 305 161 45 chr9 23494142 23494365 -94368262 - MIR SINE MIR 0 262 14 688 236 7 0 chr9 23494578 23494726 -94367901 - MLT1G1 LTR MaLR 0 595 447 449 264 104 35 chr9 23494807 23495077 -94367550 - MLT1G1 LTR MaLR -327 263 14 534 244 59 92 chr9 23495091 23495203 -94367424 + MIR SINE MIR 1 115 -147 1984 108 0 59 chr9 23495203 23495372 -94367255 - AluSx SINE Alu -24 288 143 2219 122 0 0 chr9 23495372 23495675 -94366952 - AluSg SINE Alu -7 303 1 1984 108 0 59 chr9 23495675 23495811 -94366816 - AluSx SINE Alu -169 143 1 534 244 59 92 chr9 23495811 23495969 -94366658 + MIR SINE MIR 115 262 0 602 274 105 9 chr9 23496070 23496289 -94366338 - MIR SINE MIR 0 262 23 257 332 174 32 chr9 23496318 23496571 -94366056 - L2 LINE L2 -556 2758 2470 277 56 0 0 chr9 23497700 23497736 -94364891 - 5S rRNA rRNA -85 36 1 200 35 35 0 chr9 23498220 23498249 -94364378 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 388 333 46 7 chr9 23499253 23499406 -94363221 + MIR3 SINE MIR 47 205 -3 235 268 124 0 chr9 23499823 23499920 -94362707 - MIR SINE MIR -8 254 146 649 253 49 58 chr9 23500176 23500484 -94362143 - L1ME3A LINE L1 -213 5957 5653 357 333 29 29 chr9 23500491 23500629 -94361998 - MIR SINE MIR -120 142 5 241 311 11 0 chr9 23501369 23501459 -94361168 - MLT1K LTR MaLR 0 588 498 964 208 25 38 chr9 23502320 23502560 -94360067 - MLT1E1 LTR MaLR -1 653 417 593 211 180 77 chr9 23502569 23502830 -94359797 - MLT1E1 LTR MaLR -327 299 12 1334 281 41 10 chr9 23503642 23504059 -94358568 - LTR16B LTR ERVL 0 464 35 274 268 14 0 chr9 23504630 23504701 -94357926 + MER94 DNA DNA 61 132 -2 764 279 156 46 chr9 23505594 23506135 -94356492 - L2 LINE L2 -1 3312 2713 188 279 144 19 chr9 23507259 23507363 -94355264 - MIR SINE MIR -71 137 21 276 91 0 0 chr9 23507555 23507599 -94355028 + (GA)n Simple_repeat Simple_repeat 1 44 0 602 288 52 48 chr9 23508287 23508516 -94354111 + MIR SINE MIR 18 247 -15 341 247 130 7 chr9 23509246 23509400 -94353227 + MIR SINE MIR 22 194 -68 438 238 27 45 chr9 23509774 23509896 -94352731 - MIR SINE MIR -63 145 38 314 127 0 16 chr9 23510044 23510107 -94352520 + (CAT)n Simple_repeat Simple_repeat 3 64 0 321 89 0 0 chr9 23510217 23510262 -94352365 + (CAT)n Simple_repeat Simple_repeat 1 45 0 839 220 136 28 chr9 23510273 23510487 -94352140 - MIR SINE MIR -21 241 5 6895 136 35 8 chr9 23510786 23512881 -94349746 - L1MA5A LINE L1 0 6300 4056 691 277 26 60 chr9 23513025 23513375 -94349252 + L3 LINE CR1 1143 1480 -97 325 287 28 0 chr9 23514268 23514376 -94348251 + MARNA DNA Mariner 11 121 -465 444 286 52 30 chr9 23514510 23514741 -94347886 + MARNA DNA Mariner 218 453 -133 594 310 72 20 chr9 23514978 23515378 -94347249 + L1MC4a LINE L1 5488 5908 -1900 881 162 27 0 chr9 23515423 23515571 -94347056 - Tigger2a DNA MER2_type 0 444 293 533 168 0 10 chr9 23515572 23515673 -94346954 - Tigger2a DNA MER2_type -327 107 8 23 0 0 0 chr9 23515782 23515805 -94346822 + AT_rich Low_complexity Low_complexity 1 23 0 2323 49 18 0 chr9 23516005 23516290 -94346337 - AluY SINE Alu -6 305 16 2204 123 0 0 chr9 23516504 23516813 -94345814 - AluSg SINE Alu -1 309 1 309 304 108 52 chr9 23517319 23517513 -94345114 + MIR SINE MIR 8 212 -50 284 317 83 7 chr9 23517671 23517816 -94344811 - MIR SINE MIR -7 255 100 353 277 151 15 chr9 23520311 23520522 -94342105 - MIR SINE MIR -15 247 12 2528 61 0 0 chr9 23520918 23521229 -94341398 - AluY SINE Alu 0 311 1 193 296 0 70 chr9 23521633 23521704 -94340923 - MIR SINE MIR -188 74 9 1028 159 12 0 chr9 23521731 23521894 -94340733 + FRAM SINE Alu 2 166 0 2177 77 33 0 chr9 23522121 23522416 -94340211 - AluSg SINE Alu 0 304 1 258 248 20 10 chr9 23522430 23522531 -94340096 - L1MC5 LINE L1 -30 7931 7830 1982 135 35 0 chr9 23523652 23523940 -94338687 + AluSq SINE Alu 1 298 -15 788 254 49 18 chr9 23524348 23524572 -94338055 - MIR SINE MIR 0 262 32 207 0 0 0 chr9 23524606 23524629 -94337998 + (GA)n Simple_repeat Simple_repeat 2 24 0 665 317 128 20 chr9 23527353 23527813 -94334814 - L2 LINE L2 0 3313 2804 968 143 21 66 chr9 23528428 23528655 -94333972 + MLT1C LTR MaLR 6 223 -167 521 175 0 21 chr9 23528656 23528744 -94333883 + AluJ/FRAM SINE Alu 218 298 -14 1723 195 16 0 chr9 23528744 23529051 -94333576 + AluJo SINE Alu 1 312 0 1045 224 43 14 chr9 23529065 23529346 -94333281 + MLT1C LTR MaLR 171 459 -8 198 0 0 0 chr9 23529473 23529495 -94333132 + (T)n Simple_repeat Simple_repeat 1 22 0 1201 136 0 30 chr9 23529794 23529992 -94332635 - AluJo SINE Alu 0 312 121 468 308 13 40 chr9 23530354 23530578 -94332049 + MLT1H LTR MaLR 95 312 -237 216 0 0 0 chr9 23531424 23531448 -94331179 + (T)n Simple_repeat Simple_repeat 1 24 0 633 284 96 0 chr9 23532260 23532457 -94330170 + MER58A DNA MER1_type 1 216 -8 261 221 13 13 chr9 23532585 23532662 -94329965 + (TA)n Simple_repeat Simple_repeat 2 78 0 383 316 31 48 chr9 23532663 23532891 -94329736 - L1ME LINE L1 -641 5480 5257 26 0 0 0 chr9 23533049 23533075 -94329552 + AT_rich Low_complexity Low_complexity 1 26 0 1425 191 9 86 chr9 23533111 23533540 -94329087 - L1MC3 LINE L1 0 7785 7390 * 3360 169 54 73 chr9 23533537 23534448 -94328179 - L1MC3 LINE L1 -621 7164 6272 279 333 14 57 chr9 23535544 23535685 -94326942 - MIR SINE MIR -80 182 48 204 336 59 34 chr9 23535681 23535800 -94326827 + L2 LINE L2 3191 3312 -1 * 275 295 87 58 chr9 23536642 23536815 -94325812 + L2 LINE L2 2625 2802 -512 264 299 72 53 chr9 23538025 23538232 -94324395 + LTR16C LTR ERVL 187 397 -94 248 253 91 10 chr9 23538382 23538481 -94324146 + HAL1 LINE L1 1253 1359 -1148 674 244 188 36 chr9 23538536 23538929 -94323698 - HAL1 LINE L1 -651 1856 1404 248 208 19 0 chr9 23538958 23539011 -94323616 - HAL1 LINE L1 -1612 895 842 1265 272 89 29 chr9 23539026 23539295 -94323332 - L1ME LINE L1 -4426 1654 1403 180 0 0 0 chr9 23539295 23539315 -94323312 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1265 272 89 29 chr9 23539315 23540050 -94322577 - L1ME LINE L1 -4677 1403 713 2304 70 7 30 chr9 23540050 23540350 -94322277 + AluY SINE Alu 1 293 -18 1265 272 89 29 chr9 23540350 23540451 -94322176 - L1ME LINE L1 -5367 713 619 2317 85 3 25 chr9 23540451 23540768 -94321859 - AluSp SINE Alu -3 310 1 1265 272 89 29 chr9 23540768 23541200 -94321427 - L1ME LINE L1 -5461 619 42 278 372 15 15 chr9 23541435 23541572 -94321055 + L2 LINE L2 2933 3069 -203 1319 157 0 63 chr9 23541630 23541818 -94320809 + MLT1A1 LTR MaLR 127 296 -69 2389 78 3 0 chr9 23541818 23542114 -94320513 + AluY SINE Alu 1 297 -14 1319 157 0 63 chr9 23542114 23542180 -94320447 + MLT1A1 LTR MaLR 296 365 0 728 325 48 63 chr9 23542217 23542740 -94319887 + L2 LINE L2 2571 3081 -232 422 233 120 83 chr9 23542950 23543216 -94319411 + LTR33 LTR ERVL 238 513 -8 350 274 12 0 chr9 23543217 23543301 -94319326 + L2 LINE L2 3229 3313 0 363 297 102 0 chr9 23544859 23544987 -94317640 + L1MEd LINE L1 499 639 -5480 386 195 19 110 chr9 23545013 23545167 -94317460 - MER20 DNA MER1_type -75 144 5 561 75 252 28 chr9 23545241 23545375 -94317252 + FLAM_C SINE Alu 1 158 0 236 185 121 38 chr9 23545398 23545555 -94317072 + L1MEd LINE L1 700 869 -5250 903 262 148 15 chr9 23546658 23546990 -94315637 + L3b LINE CR1 1116 1491 -92 264 275 175 37 chr9 23547978 23548167 -94314460 - MIR SINE MIR -47 215 1 2406 85 3 0 chr9 23550174 23550481 -94312146 + AluY SINE Alu 1 308 -3 742 218 111 27 chr9 23550759 23550984 -94311643 + MIR SINE MIR 1 244 -18 650 223 68 62 chr9 23551006 23551298 -94311329 - L1ME1 LINE L1 -18 6148 5855 22 0 0 0 chr9 23551370 23551392 -94311235 + AT_rich Low_complexity Low_complexity 1 22 0 2437 99 47 63 chr9 23552275 23552497 -94310130 - L1PB2 LINE L1 -7 6144 5931 2433 58 3 0 chr9 23552497 23552792 -94309835 + AluY SINE Alu 1 296 -15 2437 99 47 63 chr9 23552792 23553012 -94309615 - L1PB2 LINE L1 -220 5931 5709 21 0 0 0 chr9 23553052 23553073 -94309554 + AT_rich Low_complexity Low_complexity 1 21 0 381 296 2 60 chr9 23553098 23553258 -94309369 - MIR SINE MIR -65 143 2 238 332 150 16 chr9 23553465 23553652 -94308975 + MIR SINE MIR 34 245 -17 405 355 30 6 chr9 23555351 23555517 -94307110 - MIR SINE MIR -72 190 21 500 275 97 80 chr9 23555824 23556317 -94306310 + L1ME4a LINE L1 4921 5428 -774 273 271 41 25 chr9 23556352 23556474 -94306153 + L1ME4a LINE L1 5480 5603 -518 1849 163 0 10 chr9 23556476 23556782 -94305845 + AluJb SINE Alu 1 303 -9 30 59 0 0 chr9 23556915 23556966 -94305661 + AT_rich Low_complexity Low_complexity 1 51 0 804 263 101 44 chr9 23556995 23557581 -94305046 - L1MC5 LINE L1 -64 7897 7279 500 265 33 20 chr9 23557699 23557967 -94304660 - L1MC4 LINE L1 -734 7227 6983 308 200 115 79 chr9 23557976 23558141 -94304486 + L1ME4a LINE L1 5713 5883 -238 23 0 0 0 chr9 23558405 23558428 -94304199 + AT_rich Low_complexity Low_complexity 1 23 0 375 41 0 0 chr9 23558640 23558689 -94303938 + (TG)n Simple_repeat Simple_repeat 2 50 0 215 343 112 15 chr9 23558912 23559046 -94303581 + MIR SINE MIR 110 256 -6 637 260 85 22 chr9 23559097 23559320 -94303307 + MIR SINE MIR 5 241 -21 1749 166 28 0 chr9 23560885 23561210 -94301417 - MLT2C2 LTR ERVL -126 338 5 1711 190 3 13 chr9 23561918 23562218 -94300409 - AluJo SINE Alu -15 297 1 255 226 160 38 chr9 23563068 23563119 -94299508 - L2 LINE L2 -16 3256 3213 2334 97 3 3 chr9 23563119 23563428 -94299199 + AluSx SINE Alu 1 309 -3 255 226 160 38 chr9 23563428 23563482 -94299145 - L2 LINE L2 -59 3213 3138 428 318 62 11 chr9 23564257 23564433 -94298194 - MIR SINE MIR -58 204 20 325 287 72 50 chr9 23564412 23564593 -94298034 + MIR SINE MIR 29 213 -49 * 27 62 0 0 chr9 23564985 23565033 -94297594 + AT_rich Low_complexity Low_complexity 1 48 0 358 196 21 10 chr9 23565043 23565140 -94297487 + (TATATG)n Simple_repeat Simple_repeat 3 100 0 382 259 107 0 chr9 23565174 23565286 -94297341 + MIR SINE MIR 139 262 0 39258 58 6 1 chr9 23566560 23572604 -94290023 + L1PA5 LINE L1 76 6149 -5 26 50 0 0 chr9 23572929 23572969 -94289658 + AT_rich Low_complexity Low_complexity 1 40 0 27 92 0 0 chr9 23573070 23573146 -94289481 + AT_rich Low_complexity Low_complexity 1 76 0 336 267 86 43 chr9 23573215 23573402 -94289225 - L1MC4 LINE L1 -142 7900 7706 274 258 82 0 chr9 23573696 23573793 -94288834 - L1ME4a LINE L1 -83 6038 5934 18903 192 35 18 chr9 23573825 23575410 -94287217 + L1PA11 LINE L1 2 1560 -6052 267 93 0 0 chr9 23575410 23575453 -94287174 + (CCA)n Simple_repeat Simple_repeat 1 43 0 18903 192 35 18 chr9 23575453 23579106 -94283521 + L1PA11 LINE L1 1560 6193 -1419 354 23 0 0 chr9 23579106 23579149 -94283478 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 18903 192 35 18 chr9 23579149 23580593 -94282034 + L1PA11 LINE L1 6193 7612 0 2725 104 17 0 chr9 23580595 23581016 -94281611 - L1PA10 LINE L1 -86 6082 5655 348 329 53 0 chr9 23581088 23581240 -94281387 - L1ME4a LINE L1 -413 5708 5549 2160 137 0 0 chr9 23581424 23581717 -94280910 + AluSx SINE Alu 3 295 -17 2467 66 0 10 chr9 23581964 23582267 -94280360 + AluY SINE Alu 1 300 -11 12377 198 24 15 chr9 23582704 23586344 -94276283 - L1PA13 LINE L1 -3 6811 3156 560 93 35 0 chr9 23586350 23586436 -94276191 - L1PA13 LINE L1 -4509 2278 2190 2028 150 37 8 chr9 23586447 23586801 -94275826 + THE1B LTR MaLR 1 364 0 9964 114 21 53 chr9 23586801 23588434 -94274193 + THE1B-int LTR MaLR 1 1580 0 2077 155 29 0 chr9 23588434 23588783 -94273844 + THE1B LTR MaLR 1 359 -5 7114 216 87 6 chr9 23588788 23590434 -94272193 - L1PA13 LINE L1 -4604 2183 405 601 278 17 0 chr9 23591737 23591917 -94270710 - L1MC4 LINE L1 -1220 6822 6640 582 255 129 43 chr9 23591912 23592733 -94269894 - L1MC4 LINE L1 -1193 6615 5800 * 279 93 0 0 chr9 23592764 23592807 -94269820 + (GA)n Simple_repeat Simple_repeat 2 44 0 250 181 42 14 chr9 23594127 23594199 -94268428 - L1MA7 LINE L1 0 6291 6218 896 246 96 20 chr9 23594226 23594666 -94267961 - Charlie4a DNA MER1_type -35 473 1 30 77 0 0 chr9 23594863 23594928 -94267699 + AT_rich Low_complexity Low_complexity 1 65 0 528 322 7 46 chr9 23595054 23595337 -94267290 - L1MEd LINE L1 -5446 673 402 378 318 31 49 chr9 23595410 23595633 -94266994 - L1MEd LINE L1 -5888 231 13 359 306 33 66 chr9 23595661 23595844 -94266783 - MIR SINE MIR -66 196 20 292 363 8 8 chr9 23595906 23596030 -94266597 + L2 LINE L2 3190 3313 0 216 341 0 49 chr9 23599174 23599256 -94263371 - L2 LINE L2 0 3313 3236 2445 74 3 0 chr9 23599265 23599563 -94263064 + AluY SINE Alu 1 299 -12 883 288 0 5 chr9 23600379 23600584 -94262043 - MIR SINE MIR -57 205 2 494 233 182 17 chr9 23600716 23600892 -94261735 - MIR SINE MIR -57 205 1 26 0 0 0 chr9 23601096 23601122 -94261505 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr9 23602244 23602267 -94260360 + AT_rich Low_complexity Low_complexity 1 23 0 588 223 14 7 chr9 23602272 23602420 -94260207 - MER113 DNA MER1_type? -27 494 346 24 85 0 0 chr9 23602539 23602598 -94260029 + AT_rich Low_complexity Low_complexity 1 59 0 512 228 256 5 chr9 23602748 23602963 -94259664 + MER5C DNA MER1_type 1 269 -55 306 369 8 0 chr9 23603120 23603242 -94259385 + L2 LINE L2 3190 3312 -1 303 305 17 8 chr9 23603512 23603630 -94258997 - MLT1I LTR MaLR -10 399 281 509 282 15 68 chr9 23603677 23603883 -94258744 - MLT1I LTR MaLR -214 195 1 282 29 0 0 chr9 23604430 23604465 -94258162 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 773 321 73 45 chr9 23605565 23605923 -94256704 + L2 LINE L2 2902 3269 -44 6747 210 13 10 chr9 23605963 23607384 -94255243 + L1M1 LINE L1 9 1434 -6131 4592 110 47 22 chr9 23607387 23608157 -94254470 + L1MA2 LINE L1 5516 6304 0 211 209 0 0 chr9 23608166 23608209 -94254418 + (TGAA)n Simple_repeat Simple_repeat 3 45 0 23 68 0 0 chr9 23609751 23609795 -94252832 + AT_rich Low_complexity Low_complexity 1 44 0 41515 45 2 1 chr9 23609795 23615942 -94246685 - L1PA4 LINE L1 -3 6152 1 29 47 0 0 chr9 23616002 23616045 -94246582 + AT_rich Low_complexity Low_complexity 1 43 0 190 403 0 14 chr9 23616085 23616157 -94246470 - L2 LINE L2 -53 3219 3149 299 308 51 40 chr9 23616163 23616669 -94245958 - L1MEd LINE L1 -3219 2910 2399 788 227 26 16 chr9 23616670 23616864 -94245763 + MLT1F1 LTR MaLR 372 567 0 244 270 67 34 chr9 23616877 23617055 -94245572 - L1MEd LINE L1 -4969 1150 967 258 315 55 50 chr9 23617211 23617411 -94245216 - L1MEd LINE L1 -5492 627 427 327 94 62 0 chr9 23617594 23617690 -94244937 + (TA)n Simple_repeat Simple_repeat 2 103 0 25 0 0 0 chr9 23617694 23617719 -94244908 + AT_rich Low_complexity Low_complexity 1 25 0 382 226 118 0 chr9 23618384 23618486 -94244141 + L1PA11 LINE L1 1 114 -7467 1561 273 115 48 chr9 23618487 23618902 -94243725 + L1PA11 LINE L1 322 708 -6873 222 91 0 0 chr9 23618902 23618935 -94243692 + (TTG)n Simple_repeat Simple_repeat 3 35 0 1810 93 4 8 chr9 23618935 23619187 -94243440 - AluY SINE Alu -50 261 11 2168 101 3 13 chr9 23619191 23619363 -94243264 - AluSg SINE Alu -7 303 134 2273 102 7 0 chr9 23619363 23619656 -94242971 - AluSx SINE Alu -17 295 1 2168 101 3 13 chr9 23619656 23619789 -94242838 - AluSg SINE Alu -176 134 1 1561 273 115 48 chr9 23619789 23620138 -94242489 + L1PA11 LINE L1 710 1138 -6443 625 146 114 0 chr9 23620119 23620242 -94242385 + L1PA11 LINE L1 3199 3335 -4249 * 1962 85 5 170 chr9 23620242 23620654 -94241973 - LTR14B LTR ERVK 0 608 1 17605 153 11 26 chr9 23620658 23624466 -94238161 + L1PA11 LINE L1 3332 7081 -531 367 0 22 0 chr9 23624425 23624471 -94238156 - L1PA8A LINE L1 -469 5662 5616 * 3605 110 34 2 chr9 23624519 23625080 -94237547 + L1PA11 LINE L1 7048 7625 0 441 311 32 47 chr9 23625101 23625378 -94237249 + L1M4 LINE L1 4387 4659 -1487 324 252 178 9 chr9 23625586 23625693 -94236934 - L2 LINE L2 -1 3312 3188 387 245 66 0 chr9 23625910 23626016 -94236611 - MER5C DNA MER1_type -211 113 1 253 241 36 12 chr9 23627728 23627811 -94234816 + T-rich Low_complexity Low_complexity 4 88 0 288 0 0 0 chr9 23628583 23628615 -94234012 + (T)n Simple_repeat Simple_repeat 1 32 0 276 323 85 0 chr9 23629179 23629309 -94233318 + MIR SINE MIR 112 252 -10 199 326 61 45 chr9 23629601 23629733 -94232894 + L3 LINE CR1 1414 1547 -30 439 319 113 51 chr9 23629784 23630227 -94232400 + L2 LINE L2 2812 3291 -22 205 296 97 61 chr9 23631392 23631588 -94231039 + L2 LINE L2 3084 3286 -27 189 107 0 0 chr9 23632494 23632522 -94230105 + (TG)n Simple_repeat Simple_repeat 2 29 0 829 169 87 49 chr9 23632805 23632988 -94229639 + MIR SINE MIR 67 256 -6 189 214 0 0 chr9 23632992 23633034 -94229593 + CT-rich Low_complexity Low_complexity 3 44 0 655 219 20 7 chr9 23633568 23633714 -94228913 - MIR SINE MIR -16 246 99 261 263 79 0 chr9 23633977 23634053 -94228574 + L2 LINE L2 3186 3267 -5 180 0 0 0 chr9 23634419 23634439 -94228188 + (T)n Simple_repeat Simple_repeat 1 20 0 214 205 0 0 chr9 23634753 23634792 -94227835 + T-rich Low_complexity Low_complexity 1 39 0 392 237 122 0 chr9 23635746 23635885 -94226742 - MER103 DNA DNA -2 164 9 580 270 75 6 chr9 23636329 23636503 -94226124 + MIR SINE MIR 41 226 -36 259 392 64 0 chr9 23636762 23636887 -94225740 - L2 LINE L2 -14 3258 3126 8492 191 39 11 chr9 23637040 23639767 -94222860 - L1PA16 LINE L1 -8 6861 4212 2448 153 24 14 chr9 23639767 23640191 -94222436 - MSTA LTR MaLR 0 428 1 9217 173 20 2 chr9 23640191 23641813 -94220814 - MSTA-int LTR MaLR 0 1651 1 2541 163 9 0 chr9 23641813 23642237 -94220390 - MSTA LTR MaLR 0 428 1 8492 191 39 11 chr9 23642237 23642330 -94220297 - L1PA16 LINE L1 -2656 4213 3959 551 77 0 0 chr9 23642688 23642766 -94219861 + L1PA7 LINE L1 6074 6151 -3 1899 261 38 5 chr9 23643687 23644293 -94218334 - L1 LINE L1 -2889 3257 2632 * 13243 149 16 151 chr9 23644288 23647805 -94214822 - L1PA16 LINE L1 -3660 3189 143 795 185 49 0 chr9 23648066 23648250 -94214377 - L1MB3 LINE L1 -1 6182 5990 2029 255 60 0 chr9 23648251 23648714 -94213913 + L1PA13 LINE L1 436 926 -5861 890 171 67 0 chr9 23648714 23648878 -94213749 + MSTB LTR MaLR 250 424 -2 8812 182 22 4 chr9 23648879 23650499 -94212128 + MSTA-int LTR MaLR 2 1651 0 1993 166 79 22 chr9 23650499 23650902 -94211725 + MSTA LTR MaLR 1 426 -2 9802 230 57 37 chr9 23650909 23653197 -94209430 - L1 LINE L1 -1008 5840 3733 3166 192 35 1 chr9 23653197 23653884 -94208743 - L1MA4 LINE L1 -1 6299 5590 9802 230 57 37 chr9 23653884 23656229 -94206398 - L1 LINE L1 -3115 3733 1436 473 264 26 26 chr9 23657128 23657283 -94205344 - L2 LINE L2 0 3313 3159 541 302 63 36 chr9 23657822 23658044 -94204583 + LTR16C LTR ERVL 179 406 -85 430 247 21 59 chr9 23658387 23658573 -94204054 - L1MC5 LINE L1 -741 7220 7042 264 306 8 33 chr9 23658632 23658753 -94203874 + CT-rich Low_complexity Low_complexity 3 120 0 501 291 70 57 chr9 23658758 23658896 -94203731 - L1MC4 LINE L1 -891 6917 6782 1691 216 14 3 chr9 23658896 23659257 -94203370 + MLT1A1 LTR MaLR 1 365 0 501 291 70 57 chr9 23659257 23659516 -94203111 - L1MC4 LINE L1 -1026 6782 6554 21 57 0 0 chr9 23659526 23659561 -94203066 + AT_rich Low_complexity Low_complexity 1 35 0 326 320 141 51 chr9 23659580 23659992 -94202635 - L1MC4a LINE L1 -1386 6422 5974 440 14 58 0 chr9 23660027 23660096 -94202531 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 241 226 65 0 chr9 23660112 23660174 -94202453 - L1MC4a LINE L1 -1869 5939 5874 427 257 224 6 chr9 23660175 23660358 -94202269 - L1MC4a LINE L1 -1993 5815 5593 1859 194 12 9 chr9 23660365 23660711 -94201916 - MLT1A1 LTR MaLR 0 365 19 892 268 31 7 chr9 23660743 23661030 -94201597 - L1MC4a LINE L1 -2219 5589 5296 374 226 0 81 chr9 23661038 23661162 -94201465 - L1ME1 LINE L1 -5 6161 6048 595 302 99 62 chr9 23661172 23661229 -94201398 - L1MC4a LINE L1 -839 5307 5254 1938 142 139 21 chr9 23661229 23661610 -94201017 + MSTA LTR MaLR 1 426 -2 595 302 99 62 chr9 23661610 23661640 -94200987 - L1MC4a LINE L1 -892 5254 5227 1949 123 18 7 chr9 23661640 23661925 -94200702 - AluY SINE Alu 0 311 24 595 302 99 62 chr9 23661925 23662340 -94200287 - L1MC4a LINE L1 -919 5227 4785 22 35 0 0 chr9 23662346 23662375 -94200252 + AT_rich Low_complexity Low_complexity 1 29 0 458 274 123 25 chr9 23662911 23662996 -94199631 - MER2 DNA MER2_type -1 344 269 1802 194 11 5 chr9 23662996 23663367 -94199260 + L1PA16 LINE L1 5794 6166 0 458 274 123 25 chr9 23663367 23663485 -94199142 - MER2 DNA MER2_type -76 269 121 6701 200 81 40 chr9 23663489 23665032 -94197595 + L1M1 LINE L1 15 1621 -5944 1175 243 71 4 chr9 23665053 23665333 -94197294 - AluJb SINE Alu -3 299 1 586 298 108 48 chr9 23665428 23666097 -94196530 - L1MC4a LINE L1 -3316 2830 2122 473 318 35 20 chr9 23666555 23666753 -94195874 + MIR SINE MIR 13 213 -49 342 321 111 12 chr9 23666910 23667179 -94195448 - L2 LINE L2 -328 2985 2687 346 350 65 32 chr9 23667209 23667486 -94195141 - L2 LINE L2 -795 2519 2234 24 0 0 0 chr9 23719620 23719644 -94142983 + AT_rich Low_complexity Low_complexity 1 24 0 242 302 79 36 chr9 23720106 23720245 -94142382 - MIR SINE MIR -10 252 108 378 307 150 29 chr9 23720939 23721086 -94141541 + L1M4 LINE L1 4698 4826 -1320 438 20 0 0 chr9 23721086 23721137 -94141490 + (TG)n Simple_repeat Simple_repeat 2 52 0 378 307 150 29 chr9 23721137 23721468 -94141159 + L1M4 LINE L1 4826 5234 -912 24 53 0 0 chr9 23721554 23721592 -94141035 + AT_rich Low_complexity Low_complexity 1 38 0 2005 94 71 10 chr9 23721751 23722059 -94140568 - L1PA4 LINE L1 -3 6152 5826 1421 72 2 13 chr9 23722059 23722269 -94140358 + L1PA4 LINE L1 5691 5862 -293 1223 292 70 19 chr9 23722269 23722782 -94139845 - ERVL-C1 LTR ERVL -5225 539 1 1084 269 6 55 chr9 23722782 23723147 -94139480 - MLT2C1 LTR ERVL 0 397 51 648 168 77 28 chr9 23724220 23724363 -94138264 + MLT1B LTR MaLR 3 152 -238 1565 194 47 10 chr9 23724367 23724724 -94137903 - AluJb SINE Alu 0 370 3 897 220 12 75 chr9 23724725 23724980 -94137647 + MLT1B LTR MaLR 152 390 0 1178 253 25 52 chr9 23725366 23725774 -94136853 + MLT2C1 LTR ERVL 1 397 0 1223 292 70 19 chr9 23725774 23726287 -94136340 + ERVL-C1 LTR ERVL 1 539 -5225 1812 56 3 2 chr9 23726287 23726529 -94136098 - L1PA4 LINE L1 -292 5863 5655 * 2412 77 15 3 chr9 23726493 23726819 -94135808 + L1PA4 LINE L1 5826 6155 0 490 307 7 0 chr9 23726819 23726956 -94135671 + ERVL-C1 LTR ERVL 563 700 -5064 970 256 12 8 chr9 23727058 23727308 -94135319 - MLT1D LTR MaLR -5 500 250 573 150 9 62 chr9 23727408 23727521 -94135106 - MLT1D LTR MaLR -398 107 1 817 223 93 40 chr9 23727667 23728026 -94134601 - L1ME3A LINE L1 -13 6151 5768 730 263 62 0 chr9 23728035 23728229 -94134398 - MER58A DNA MER1_type 0 224 19 483 255 166 0 chr9 23728239 23728396 -94134231 - L1ME3A LINE L1 -424 5746 5564 328 120 0 0 chr9 23728457 23728507 -94134120 + MADE1 DNA Mariner 1 50 -30 23 0 0 0 chr9 23729600 23729623 -94133004 + AT_rich Low_complexity Low_complexity 1 23 0 216 336 9 82 chr9 23731067 23731177 -94131450 - MIR3 SINE MIR 0 208 107 3301 42 2 0 chr9 23732222 23732624 -94130003 - L1PA6 LINE L1 -5 6149 5747 240 308 67 0 chr9 23732831 23732935 -94129692 - HAL1b LINE L1 -685 663 553 6780 65 8 4 chr9 23733153 23734679 -94127948 - L1PA7 LINE L1 -13 6141 4612 201 175 0 0 chr9 23736077 23736117 -94126510 + (TGGA)n Simple_repeat Simple_repeat 1 40 0 198 313 41 95 chr9 23736383 23736530 -94126097 + MIR SINE MIR 47 185 -77 480 315 27 12 chr9 23737907 23738094 -94124533 + MLT1H LTR MaLR 23 198 -351 183 167 0 0 chr9 23738184 23738226 -94124401 + (TCTA)n Simple_repeat Simple_repeat 2 43 0 348 274 74 47 chr9 23738514 23738704 -94123923 - L2 LINE L2 -4 3309 3115 811 339 31 45 chr9 23739033 23739486 -94123141 - L2 LINE L2 -246 3026 2574 317 241 37 37 chr9 23739550 23739658 -94122969 - MLT1H LTR MaLR -10 539 432 1216 151 18 49 chr9 23739833 23740058 -94122569 - AluJo SINE Alu -21 291 74 22 35 0 0 chr9 23740062 23740091 -94122536 + AT_rich Low_complexity Low_complexity 1 29 0 264 365 52 17 chr9 23740245 23740360 -94122267 - L2 LINE L2 -20 3252 3134 24 0 0 0 chr9 23741423 23741447 -94121180 + AT_rich Low_complexity Low_complexity 1 24 0 568 342 141 18 chr9 23741809 23742417 -94120210 + L2 LINE L2 1882 2564 -750 291 217 36 24 chr9 23742956 23743039 -94119588 - L1ME LINE L1 -526 5595 5512 6324 34 22 0 chr9 23743040 23743804 -94118823 + L1PA4 LINE L1 5372 6152 -3 259 338 66 5 chr9 23743822 23744020 -94118607 - L1ME LINE L1 -2282 5526 5317 378 307 150 29 chr9 23744087 23744418 -94118209 - L1ME LINE L1 -912 5234 4826 438 20 0 0 chr9 23744418 23744469 -94118158 + (CA)n Simple_repeat Simple_repeat 2 52 0 378 307 150 29 chr9 23744469 23744616 -94118011 - L1ME LINE L1 -1320 4826 4698 242 302 79 36 chr9 23745310 23745449 -94117178 + MIR SINE MIR 108 252 -10 24 0 0 0 chr9 23745911 23745935 -94116692 + AT_rich Low_complexity Low_complexity 1 24 0 360 274 53 26 chr9 23747804 23747917 -94114710 - L2 LINE L2 -20 3293 3178 233 304 72 0 chr9 23748524 23748593 -94114034 + L2 LINE L2 3189 3262 -10 1823 151 19 29 chr9 23748719 23749031 -94113596 + AluSx SINE Alu 3 311 -1 297 366 0 52 chr9 23749108 23749242 -94113385 - L2 LINE L2 -179 3093 2967 691 220 33 7 chr9 23749256 23749406 -94113221 - MLT1G1 LTR MaLR 0 595 442 428 233 128 39 chr9 23749416 23749596 -94113031 - MLT1G1 LTR MaLR -244 286 91 347 401 75 22 chr9 23749869 23750518 -94112109 - L2 LINE L2 -582 2732 2049 2154 96 0 40 chr9 23751473 23751776 -94110851 - AluSg SINE Alu -19 291 1 348 297 109 30 chr9 23752018 23752220 -94110407 - MIR SINE MIR -44 218 1 449 228 0 39 chr9 23752261 23752388 -94110239 - L1MB8 LINE L1 -7 6171 6050 42647 33 21 2 chr9 23752557 23758587 -94104040 - L1PA2 LINE L1 -4 6151 5 201 324 26 8 chr9 23759094 23759239 -94103388 + MIR SINE MIR 77 249 -13 * 205 255 21 0 chr9 23759208 23759255 -94103372 + L2 LINE L2 3264 3311 -2 249 327 87 72 chr9 23759451 23759659 -94102968 + MIR SINE MIR 47 257 -5 294 298 101 36 chr9 23759856 23760024 -94102603 + MIR SINE MIR 84 262 0 540 354 91 31 chr9 23763085 23763705 -94098922 + L2 LINE L2 2616 3272 0 2077 118 3 0 chr9 23763747 23764036 -94098591 + AluSx SINE Alu 18 307 -5 656 308 39 5 chr9 23764202 23764410 -94098217 + MIR SINE MIR 14 228 -34 6517 144 108 93 chr9 23766085 23767755 -94094872 - pTR5 LTR ERV1 0 2438 743 200 299 172 23 chr9 23768177 23768264 -94094363 + MIR SINE MIR 63 162 -100 360 293 38 9 chr9 23768310 23768416 -94094211 - MIR SINE MIR -1 261 153 255 346 45 23 chr9 23768967 23769100 -94093527 + MIR SINE MIR 81 216 -46 214 322 217 0 chr9 23769705 23769820 -94092807 + L2 LINE L2 3133 3272 0 411 294 147 28 chr9 23769831 23770042 -94092585 + MIR SINE MIR 8 243 -19 1078 154 11 0 chr9 23770331 23770519 -94092108 + L1PB1 LINE L1 3 192 -6671 13815 160 47 22 chr9 23770526 23771016 -94091611 + L1PB1 LINE L1 634 1111 -5756 2159 98 0 73 chr9 23771016 23771344 -94091283 - AluY SINE Alu -7 304 1 13815 160 47 22 chr9 23771344 23776372 -94086255 + L1PB1 LINE L1 1111 6309 -558 2221 108 0 3 chr9 23776372 23776667 -94085960 + AluY SINE Alu 1 294 -17 13815 160 47 22 chr9 23776667 23777053 -94085574 + L1PB1 LINE L1 6309 6684 -183 278 116 23 23 chr9 23777060 23777146 -94085481 + (TA)n Simple_repeat Simple_repeat 1 86 0 370 318 23 81 chr9 23778254 23778512 -94084115 + MIR SINE MIR 14 256 -6 198 268 144 31 chr9 23778662 23778759 -94083868 - MIR SINE MIR -63 145 38 1441 213 24 71 chr9 23779039 23779448 -94083179 - MLT1B LTR MaLR 0 390 1 924 180 47 43 chr9 23779828 23780039 -94082588 - MER20 DNA MER1_type -3 216 5 696 302 117 11 chr9 23780074 23780432 -94082195 + MLT1L LTR MaLR 220 615 0 207 338 75 25 chr9 23780795 23780955 -94081672 + L2 LINE L2 1934 2101 -1213 195 191 95 48 chr9 23781074 23781158 -94081469 + MIR SINE MIR 117 204 -58 275 293 71 30 chr9 23781976 23782075 -94080552 + MIR SINE MIR 64 166 -96 1781 180 0 10 chr9 23784176 23784481 -94078146 + AluJb SINE Alu 1 302 -10 188 349 198 0 chr9 23785636 23785742 -94076885 - L3 LINE CR1 -16 1561 1435 296 333 0 0 chr9 23785937 23786018 -94076609 - MIR3 SINE MIR -20 188 108 775 210 0 107 chr9 23786204 23786437 -94076190 + MER3 DNA MER1_type 2 209 0 227 295 49 0 chr9 23786579 23786640 -94075987 - MIR SINE MIR -107 101 38 2316 137 54 10 chr9 23786859 23787267 -94075360 + L1PA15 LINE L1 5721 6146 -19 315 62 0 0 chr9 23787306 23787354 -94075273 + L1PA15 LINE L1 6112 6159 -6 263 315 14 0 chr9 23788733 23788806 -94073821 + GA-rich Low_complexity Low_complexity 3 76 0 353 302 139 45 chr9 23788810 23789349 -94073278 + L1M4 LINE L1 4802 5391 -755 756 89 0 0 chr9 23789507 23789636 -94072991 + AluY SINE Alu 181 309 0 219 292 45 34 chr9 23789669 23789758 -94072869 + L2 LINE L2 3136 3225 -47 232 279 135 18 chr9 23789990 23790101 -94072526 + MIR SINE MIR 98 221 -41 290 250 132 35 chr9 23791768 23791912 -94070715 - L2 LINE L2 -925 2389 2232 200 280 151 11 chr9 23792123 23792216 -94070411 + MER5B DNA MER1_type 1 106 -72 195 278 0 19 chr9 23792228 23792282 -94070345 + MER5A DNA MER1_type 136 188 -1 418 242 178 13 chr9 23794160 23794317 -94068310 + MIR SINE MIR 48 230 -32 403 233 48 0 chr9 23794538 23794641 -94067986 - MIR SINE MIR -102 160 53 350 174 29 0 chr9 23795338 23795407 -94067220 + MIR SINE MIR 70 140 -122 244 237 31 103 chr9 23795613 23795710 -94066917 - MIR3 SINE MIR -104 104 15 2187 121 0 6 chr9 23797053 23797366 -94065261 + AluSx SINE Alu 1 311 -1 862 255 22 0 chr9 23797983 23798167 -94064460 + MER5A DNA MER1_type 2 189 0 2505 38 3 35 chr9 23798929 23799242 -94063385 - AluY SINE Alu -8 303 1 479 258 81 53 chr9 23799671 23799846 -94062781 - MIR SINE MIR -34 228 45 2017 141 39 30 chr9 23799846 23800207 -94062420 - THE1B LTR MaLR 0 364 1 479 258 81 53 chr9 23800207 23800240 -94062387 - MIR SINE MIR -217 45 14 341 241 48 60 chr9 23800245 23800411 -94062216 - MER20B DNA MER1_type 0 783 620 1097 220 59 43 chr9 23800411 23800734 -94061893 + L1ME2 LINE L1 5826 6153 -11 1165 283 86 14 chr9 23800928 23801416 -94061211 - MER20B DNA MER1_type -238 545 23 21 36 0 0 chr9 23801778 23801806 -94060821 + AT_rich Low_complexity Low_complexity 1 28 0 25 51 0 0 chr9 23802552 23802591 -94060036 + AT_rich Low_complexity Low_complexity 1 39 0 1147 246 40 63 chr9 23803256 23803613 -94059014 - L1MEc LINE L1 -5932 464 116 1969 149 3 0 chr9 23803613 23803923 -94058704 - AluSx SINE Alu 0 313 3 1147 246 40 63 chr9 23803923 23803994 -94058633 - L1MEc LINE L1 -6280 116 45 1497 265 135 15 chr9 23804097 23804637 -94057990 - MLT1E2 LTR MaLR 0 626 22 183 316 0 86 chr9 23805068 23805185 -94057442 + L2 LINE L2 2960 3066 -206 234 367 0 13 chr9 23805397 23805476 -94057151 + MER5A DNA MER1_type 68 145 -44 235 308 0 0 chr9 23806258 23806310 -94056317 - L2 LINE L2 -88 3184 3133 515 295 112 19 chr9 23806412 23806437 -94056190 + L1ME1 LINE L1 3224 3245 -2901 1772 154 3 25 chr9 23806437 23806723 -94055904 + AluJo SINE Alu 1 280 -32 203 79 26 0 chr9 23806725 23806763 -94055864 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 515 295 112 19 chr9 23806763 23806977 -94055650 + L1ME1 LINE L1 3245 3438 -2708 495 0 0 0 chr9 23806977 23807032 -94055595 + (TA)n Simple_repeat Simple_repeat 2 56 0 515 295 112 19 chr9 23807032 23807164 -94055463 + L1ME1 LINE L1 3438 3634 -2512 3284 258 80 20 chr9 23807188 23808976 -94053651 + L1ME1 LINE L1 3708 5594 -572 718 167 48 12 chr9 23808966 23809134 -94053493 - L1PA15-16 LINE L1 -4577 2272 2099 * 991 266 14 3 chr9 23809133 23809423 -94053204 + L1ME1 LINE L1 5597 5889 -277 983 343 34 38 chr9 23809435 23810047 -94052580 + L1PA16 LINE L1 788 1397 -6177 406 266 53 0 chr9 23810168 23810262 -94052365 + L1PA16 LINE L1 2083 2181 -5400 11020 221 27 61 chr9 23810474 23812005 -94050622 + L1PA16 LINE L1 2183 3765 -3819 2325 98 3 0 chr9 23812005 23812312 -94050315 + AluSq SINE Alu 3 310 -3 11020 221 27 61 chr9 23812312 23813642 -94048985 + L1PA16 LINE L1 3765 5139 -2445 450 0 0 0 chr9 23813642 23813692 -94048935 + (CA)n Simple_repeat Simple_repeat 2 51 0 11020 221 27 61 chr9 23813692 23814684 -94047943 + L1PA16 LINE L1 5139 6163 -1421 542 55 0 0 chr9 23814684 23814757 -94047870 - AluY SINE Alu -13 297 225 1239 56 25 6 chr9 23814757 23814917 -94047710 - AluY SINE Alu -148 163 1 11020 221 27 61 chr9 23814917 23815262 -94047365 + L1PA16 LINE L1 6161 6453 -1131 1506 179 22 8 chr9 23815272 23815540 -94047087 + AluJo SINE Alu 11 282 -30 204 40 0 0 chr9 23815545 23815570 -94047057 + (TA)n Simple_repeat Simple_repeat 1 25 0 316 196 0 72 chr9 23815575 23815672 -94046955 + L1MC4 LINE L1 6614 6703 -1339 5141 148 27 1 chr9 23815684 23816811 -94045816 + L1PA16 LINE L1 6443 7595 -9 234 0 0 0 chr9 23816814 23816840 -94045787 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 810 206 17 127 chr9 23816846 23817137 -94045490 + L1ME1 LINE L1 5878 6136 -30 2182 89 4 0 chr9 23817262 23817542 -94045085 + AluSp SINE Alu 1 281 -32 949 78 7 7 chr9 23817545 23817686 -94044941 + (GAA)n Simple_repeat Simple_repeat 2 142 0 221 290 65 47 chr9 23818414 23818521 -94044106 - L2 LINE L2 -8 3305 3197 307 196 0 0 chr9 23819320 23819371 -94043256 - L2 LINE L2 -1 3312 3262 259 297 127 8 chr9 23821025 23821143 -94041484 + MIR SINE MIR 82 213 -49 375 327 41 8 chr9 23821971 23822128 -94040499 - MIR SINE MIR -62 146 39 207 0 0 0 chr9 23822711 23822734 -94039893 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1284 152 0 0 chr9 23822754 23822945 -94039682 - AluJo SINE Alu -121 191 1 267 339 61 26 chr9 23823133 23823248 -94039379 - L2 LINE L2 0 3272 3154 299 242 10 30 chr9 23823766 23823865 -94038762 - L1MEc LINE L1 -6260 136 40 9346 180 94 48 chr9 23823945 23825737 -94036890 - L1MCa LINE L1 -3947 2479 771 234 0 0 0 chr9 23825737 23825763 -94036864 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1944 147 3 0 chr9 23825765 23826051 -94036576 - AluSq SINE Alu -26 287 1 9346 180 94 48 chr9 23826051 23826748 -94035879 - L1MCa LINE L1 -5655 771 3 2312 168 70 2 chr9 23826808 23827207 -94035420 + MSTB LTR MaLR 1 426 0 290 317 172 17 chr9 23827309 23827489 -94035138 - MIR SINE MIR -19 243 36 28 0 0 0 chr9 23828029 23828057 -94034570 + AT_rich Low_complexity Low_complexity 1 28 0 203 286 20 0 chr9 23828778 23828827 -94033800 + L2 LINE L2 3251 3300 -13 22 35 0 0 chr9 23829215 23829244 -94033383 + AT_rich Low_complexity Low_complexity 1 29 0 918 276 86 20 chr9 23829420 23829771 -94032856 + LTR16B LTR ERVL 88 461 -3 362 310 107 42 chr9 23830185 23830540 -94032087 - L2 LINE L2 -1210 2104 1727 224 223 33 10 chr9 23831724 23831796 -94030831 - MIR SINE MIR -65 143 73 294 91 15 30 chr9 23832352 23832418 -94030209 + (TA)n Simple_repeat Simple_repeat 2 66 0 432 259 23 15 chr9 23834131 23834262 -94028365 + MIR SINE MIR 111 242 -20 341 322 68 17 chr9 23835156 23835448 -94027179 + L1ME4a LINE L1 5548 5854 -267 1949 252 40 1 chr9 23836750 23837407 -94025220 - L1ME LINE L1 -367 5799 5122 885 195 96 44 chr9 23837425 23837697 -94024930 + pTR5 LTR ERV1 743 1028 -1410 4639 79 48 154 chr9 23837776 23838700 -94023927 + LTR12 LTR ERV1 1 826 0 36177 91 7 24 chr9 23838700 23844165 -94018462 + HERV9 LTR ERV1 1 4978 -3421 3080 113 15 12 chr9 23844175 23844867 -94017760 + HERV9 LTR ERV1 504 8399 0 3785 82 300 3 chr9 23844955 23845592 -94017035 + LTR12 LTR ERV1 1 826 0 3560 232 54 26 chr9 23845601 23846756 -94015871 - L1ME LINE L1 -1034 5112 3926 2873 249 107 8 chr9 23846771 23848010 -94014617 - L1ME LINE L1 -2462 3684 2324 232 138 46 15 chr9 23848026 23848091 -94014536 - L1M4 LINE L1 -1768 4378 4312 352 358 30 0 chr9 23848106 23848240 -94014387 - MIR3 SINE MIR -6 202 65 382 168 168 21 chr9 23848657 23848752 -94013875 - MIR SINE MIR -66 196 88 686 266 100 3 chr9 23848838 23849207 -94013420 + MER113 DNA MER1_type? 74 478 -43 188 330 50 40 chr9 23849385 23849485 -94013142 + MER5B DNA MER1_type 77 177 -1 195 100 0 0 chr9 23850967 23850997 -94011630 + (CCG)n Simple_repeat Simple_repeat 2 31 0 395 257 81 113 chr9 23851009 23851390 -94011237 - L1M2 LINE L1 -5707 1142 774 601 143 0 10 chr9 23851850 23851948 -94010679 - AluJb SINE Alu -26 286 190 269 277 0 0 chr9 23856989 23857054 -94005573 + (TATATG)n Simple_repeat Simple_repeat 2 66 0 24 67 0 0 chr9 23857757 23857802 -94004825 + AT_rich Low_complexity Low_complexity 1 45 0 320 265 46 53 chr9 23858118 23858269 -94004358 - L2 LINE L2 0 3313 3164 342 291 101 25 chr9 23858400 23858558 -94004069 + L3 LINE CR1 1254 1423 -154 282 308 67 0 chr9 23859040 23859144 -94003483 + MIR SINE MIR 78 188 -74 1383 290 117 17 chr9 23859498 23860036 -94002591 - MLT2E LTR ERVL -18 610 19 4834 276 44 13 chr9 23860407 23862017 -94000610 - ERVL LTR ERVL -401 5363 3629 4746 317 47 30 chr9 23862133 23864200 -93998427 - ERVL LTR ERVL -2275 3489 1386 1286 269 101 6 chr9 23864332 23864670 -93997957 - MLT2E LTR ERVL -249 379 10 702 201 40 0 chr9 23864847 23864996 -93997631 - L1MD2 LINE L1 -18 6341 6187 802 280 54 51 chr9 23865059 23865373 -93997254 - L2 LINE L2 -609 2705 2391 421 282 85 16 chr9 23865609 23866045 -93996582 + L1M4 LINE L1 2922 3387 -2759 24 91 0 0 chr9 23866438 23866504 -93996123 + AT_rich Low_complexity Low_complexity 1 66 0 360 111 0 0 chr9 23866646 23866700 -93995927 + (TG)n Simple_repeat Simple_repeat 1 54 0 284 276 47 63 chr9 23866705 23866832 -93995795 - MIR SINE MIR -117 145 21 613 248 35 45 chr9 23867050 23867252 -93995375 + MER63A DNA MER1_type 1 200 -10 292 263 26 0 chr9 23867274 23867350 -93995277 - MLT1L LTR MaLR -332 283 206 361 237 146 56 chr9 23867483 23867753 -93994874 + L1M4 LINE L1 4022 4334 -1812 480 132 40 0 chr9 23867768 23867920 -93994707 + (TA)n Simple_repeat Simple_repeat 1 158 0 25 31 0 0 chr9 23867932 23867964 -93994663 + AT_rich Low_complexity Low_complexity 1 32 0 407 281 30 115 chr9 23867995 23868265 -93994362 + L1M4 LINE L1 4330 4576 -1570 623 304 0 39 chr9 23868296 23868500 -93994127 + MIR SINE MIR 36 231 -31 927 285 102 55 chr9 23868874 23869179 -93993448 - L2 LINE L2 0 3313 3024 1705 145 75 34 chr9 23869179 23869537 -93993090 + THE1C LTR MaLR 3 375 0 927 285 102 55 chr9 23869537 23870044 -93992583 - L2 LINE L2 -289 3024 2458 1434 193 19 4 chr9 23870077 23870346 -93992281 + AluJb SINE Alu 20 292 -20 2099 293 140 19 chr9 23870417 23871427 -93991200 - L2 LINE L2 -962 2352 1221 392 329 82 12 chr9 23871480 23871650 -93990977 - LTR33 LTR ERVL -339 182 1 22 56 0 0 chr9 23871797 23871833 -93990794 + AT_rich Low_complexity Low_complexity 1 36 0 2055 105 54 3 chr9 23872231 23872525 -93990102 + AluSc SINE Alu 1 309 0 21 0 0 0 chr9 23873122 23873143 -93989484 + AT_rich Low_complexity Low_complexity 1 21 0 354 298 40 53 chr9 23873382 23873533 -93989094 + MIR SINE MIR 29 177 -85 351 307 84 22 chr9 23874021 23874200 -93988427 - MIR SINE MIR -25 237 48 243 215 0 0 chr9 23874323 23874388 -93988239 + (TATATG)n Simple_repeat Simple_repeat 6 70 0 28 0 0 0 chr9 23874532 23874560 -93988067 + AT_rich Low_complexity Low_complexity 1 28 0 2316 91 7 0 chr9 23877050 23877346 -93985281 + AluSp SINE Alu 1 298 -15 1741 172 3 3 chr9 23877587 23877872 -93984755 - AluJo SINE Alu -23 289 5 384 327 59 45 chr9 23878100 23878302 -93984325 - MLT1I LTR MaLR -177 232 28 202 318 0 0 chr9 23878536 23878602 -93984025 + (ATG)n Simple_repeat Simple_repeat 3 68 0 226 335 171 24 chr9 23879240 23879404 -93983223 - MIR SINE MIR -49 213 26 7315 236 82 58 chr9 23879881 23882527 -93980100 - L1M4 LINE L1 -1197 5760 3179 1602 228 0 0 chr9 23882527 23882817 -93979810 - AluJb SINE Alu -19 293 4 7315 236 82 58 chr9 23882817 23883618 -93979009 - L1M4 LINE L1 -3778 3179 2199 207 0 0 0 chr9 23883618 23883641 -93978986 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7315 236 82 58 chr9 23883641 23884221 -93978406 - L1M4 LINE L1 -4758 2199 1634 813 181 7 0 chr9 23884222 23884383 -93978244 - AluJb SINE Alu 0 308 147 731 221 0 0 chr9 23884394 23884574 -93978053 - FLAM_C SINE Alu 0 182 3 2461 261 115 37 chr9 23884576 23885569 -93977058 - L1M4 LINE L1 -5202 1657 588 249 108 0 0 chr9 23885664 23885701 -93976926 + (CA)n Simple_repeat Simple_repeat 1 37 0 360 83 0 0 chr9 23886033 23886081 -93976546 - L1PA4 LINE L1 -251 5903 5856 2113 28 0 0 chr9 23886081 23886329 -93976298 + L1PA4 LINE L1 5903 6153 -2 180 111 0 0 chr9 23886639 23886666 -93975961 + (GA)n Simple_repeat Simple_repeat 1 27 0 987 139 0 13 chr9 23888423 23888574 -93974053 - MER50 LTR ERV1 -23 711 563 1844 24 0 0 chr9 23888574 23888785 -93973842 - L1P LINE L1 -1834 4312 4102 * 5590 47 0 0 chr9 23888784 23889484 -93973143 + L1P LINE L1 4314 5013 -1133 433 277 124 33 chr9 23889486 23889728 -93972899 - L2 LINE L2 -1 3312 3049 218 218 18 0 chr9 23891457 23891512 -93971115 + T-rich Low_complexity Low_complexity 2 57 0 6402 25 0 0 chr9 23891513 23892257 -93970370 - L1PA3 LINE L1 -3 6152 5409 322 323 124 21 chr9 23892644 23892830 -93969797 + MIR SINE MIR 2 206 -56 503 305 93 49 chr9 23892835 23893081 -93969546 - MIR SINE MIR -5 257 1 4258 223 30 15 chr9 23893461 23895057 -93967570 - L1PA13 LINE L1 -3817 2980 1326 16339 116 10 33 chr9 23895401 23898766 -93963861 - L1P3 LINE L1 -2765 3696 337 22 0 0 0 chr9 23898941 23898963 -93963664 + AT_rich Low_complexity Low_complexity 1 22 0 298 289 141 8 chr9 23899941 23900062 -93962565 + MIR SINE MIR 36 172 -90 1376 182 42 45 chr9 23900113 23900381 -93962246 - L1M3 LINE L1 -571 5600 5332 2016 164 37 8 chr9 23900381 23900760 -93961867 + MLT1B LTR MaLR 1 390 0 1376 182 42 45 chr9 23900760 23900878 -93961749 - L1M3 LINE L1 -839 5332 5215 1043 314 115 47 chr9 23902204 23902735 -93959892 - MLT1G1 LTR MaLR -24 571 5 230 319 26 26 chr9 23902738 23902851 -93959776 - MLT1G1-int LTR MaLR -11 1724 1612 1901 158 153 5 chr9 23902889 23903262 -93959365 + MSTA LTR MaLR 1 428 0 2181 132 24 16 chr9 23903449 23903821 -93958806 - THE1C LTR MaLR 0 375 1 424 250 0 61 chr9 23904418 23904550 -93958077 - MLT1G1-int LTR MaLR -793 578 455 338 313 17 0 chr9 23904719 23904834 -93957793 - MLT1G1-int LTR MaLR -1614 121 5 543 296 126 5 chr9 23904852 23905051 -93957576 - MLT1G1 LTR MaLR -15 580 358 23 0 0 0 chr9 23905185 23905208 -93957419 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr9 23905295 23905332 -93957295 + AT_rich Low_complexity Low_complexity 1 37 0 23543 33 0 0 chr9 23905332 23908959 -93953668 - L1PA4 LINE L1 -7 6148 2522 10748 51 0 2 chr9 23908959 23910331 -93952296 + L1PA4 LINE L1 1144 2512 -3634 3093 218 7 56 chr9 23910328 23911150 -93951477 - L1P LINE L1 -1155 4991 4210 * 2088 120 76 12 chr9 23911150 23911492 -93951135 + THE1B LTR MaLR 1 364 0 11367 106 4 6 chr9 23911492 23913075 -93949552 + THE1B-int LTR MaLR 1 1580 0 1005 127 100 0 chr9 23913078 23913228 -93949399 + THE1B LTR MaLR 4 168 -196 16379 146 7 13 chr9 23913236 23915533 -93947094 + L1PA10 LINE L1 2423 4734 -1434 225 65 0 0 chr9 23915533 23915564 -93947063 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 16379 146 7 13 chr9 23915564 23916200 -93946427 + L1PA10 LINE L1 4734 5373 -795 2021 140 0 16 chr9 23916200 23916515 -93946112 + AluSg SINE Alu 1 310 0 16379 146 7 13 chr9 23916515 23917277 -93945350 + L1PA10 LINE L1 5373 6159 -9 3142 261 14 14 chr9 23917282 23918122 -93944505 - L1PA13 LINE L1 -2792 4005 3163 2269 97 0 13 chr9 23918122 23918433 -93944194 + AluY SINE Alu 1 307 -4 3142 261 14 14 chr9 23918433 23918562 -93944065 - L1PA13 LINE L1 -3633 3164 3036 2669 268 53 40 chr9 23918674 23919450 -93943177 - L1PA13 LINE L1 -6001 786 1 229 333 67 0 chr9 23919660 23919765 -93942862 + MIR SINE MIR 15 126 -136 21 0 0 0 chr9 23920267 23920288 -93942339 + AT_rich Low_complexity Low_complexity 1 21 0 320 309 82 82 chr9 23920331 23920635 -93941992 + L2 LINE L2 2550 2853 -461 282 304 0 0 chr9 23920708 23920787 -93941840 + L2 LINE L2 2994 3072 -241 281 393 65 0 chr9 23920814 23920982 -93941645 - L2 LINE L2 -1723 1591 1413 2036 253 176 39 chr9 23921367 23922536 -93940091 - L1ME1 LINE L1 -18 6542 5204 536 101 13 0 chr9 23922546 23922625 -93940002 + MADE1 DNA Mariner 1 80 0 3591 270 80 68 chr9 23922627 23924444 -93938183 - L1ME1 LINE L1 -1610 4930 3083 2107 150 0 0 chr9 23924444 23924751 -93937876 - AluSx SINE Alu -5 307 1 3591 270 80 68 chr9 23924751 23925000 -93937627 - L1ME1 LINE L1 -3457 3083 2839 570 214 38 0 chr9 23925002 23925161 -93937466 - L1ME1 LINE L1 -4809 1731 1567 1096 249 60 68 chr9 23925179 23925801 -93936826 - L1ME1 LINE L1 -5017 1526 910 342 357 23 50 chr9 23926360 23926618 -93936009 - L1ME1 LINE L1 -6242 298 48 21 0 0 0 chr9 23926998 23927019 -93935608 + AT_rich Low_complexity Low_complexity 1 21 0 42315 52 4 2 chr9 23927502 23932850 -93929777 - L1P LINE L1 -783 5363 4 496 309 61 6 chr9 23932854 23933035 -93929592 - MIR SINE MIR -70 192 2 532 346 0 36 chr9 23933476 23933713 -93928914 + MIR SINE MIR 38 262 0 2391 99 15 46 chr9 23933878 23934290 -93928337 + L1MA2 LINE L1 5906 6304 0 2195 49 0 81 chr9 23935037 23935386 -93927241 - AluY SINE Alu 0 324 1 26 0 0 0 chr9 23935857 23935883 -93926744 + AT_rich Low_complexity Low_complexity 1 26 0 712 209 20 0 chr9 23937071 23937224 -93925403 + L1PB4 LINE L1 5999 6154 -2 270 147 35 17 chr9 23937800 23937873 -93924754 - L1ME3 LINE L1 0 6166 6092 743 244 157 14 chr9 23938462 23938679 -93923948 - MIR SINE MIR -11 251 4 229 268 96 22 chr9 23941186 23941287 -93921340 + MER5A DNA MER1_type 21 141 -48 5705 163 25 9 chr9 23941444 23942564 -93920063 + L1MC1 LINE L1 5186 6324 -9 187 407 23 0 chr9 23942602 23942688 -93919939 - L2 LINE L2 0 3272 3185 229 195 0 0 chr9 23944193 23944234 -93918393 - MIR SINE MIR -10 252 212 564 291 24 35 chr9 23944296 23944508 -93918119 - MIR SINE MIR 0 262 55 1393 199 11 31 chr9 23944661 23944948 -93917679 - AluJo SINE Alu -31 281 1 185 343 225 11 chr9 23945149 23945682 -93916945 - L2 LINE L2 -643 2671 2025 307 336 16 56 chr9 23946799 23946924 -93915703 + MIR SINE MIR 19 138 -70 190 164 36 0 chr9 23947657 23947712 -93914915 + (TA)n Simple_repeat Simple_repeat 2 58 0 1871 146 0 28 chr9 23947910 23948231 -93914396 - AluSx SINE Alu 0 312 1 1687 330 93 40 chr9 23948308 23949518 -93913109 + L3 LINE CR1 297 1571 -6 702 211 197 0 chr9 23950142 23950294 -93912333 - MER5A DNA MER1_type -6 183 2 234 263 25 0 chr9 23951143 23951223 -93911404 + (CATATA)n Simple_repeat Simple_repeat 6 87 0 193 353 40 27 chr9 23951582 23951732 -93910895 - L2 LINE L2 -170 3102 2951 333 93 0 0 chr9 23951982 23952036 -93910591 + (TTCC)n Simple_repeat Simple_repeat 3 56 0 318 167 0 0 chr9 23954804 23954864 -93907763 + C-rich Low_complexity Low_complexity 3 62 0 214 323 204 14 chr9 23954905 23955125 -93907502 - MIR SINE MIR 0 262 1 2316 25 4 4 chr9 23955511 23955791 -93906836 - L1PA5 LINE L1 -1 6153 5874 1745 20 5 0 chr9 23955791 23955993 -93906634 + L1PA5 LINE L1 5673 5875 -280 252 59 0 0 chr9 23956856 23956890 -93905737 + (TG)n Simple_repeat Simple_repeat 1 34 0 192 125 0 0 chr9 23956890 23956922 -93905705 + (GA)n Simple_repeat Simple_repeat 2 33 0 420 20 0 0 chr9 23957670 23957719 -93904908 + (TG)n Simple_repeat Simple_repeat 1 49 0 6604 85 4 1 chr9 23957789 23959209 -93903418 + L1PA8 LINE L1 4743 6165 -7 196 355 51 43 chr9 23959391 23959647 -93902980 - L2 LINE L2 -914 2400 2143 253 221 0 73 chr9 23961207 23961275 -93901352 + L2 LINE L2 3251 3313 0 * 381 326 42 37 chr9 23961249 23961439 -93901188 - MIR SINE MIR -6 256 66 2098 84 36 4 chr9 23962111 23962386 -93900241 - AluY SINE Alu -21 290 7 190 296 0 37 chr9 23962707 23962761 -93899866 - L3 LINE CR1 -6 1571 1520 1763 131 39 26 chr9 23963317 23963622 -93899005 + AluSx SINE Alu 1 309 -3 5992 124 28 3 chr9 23963961 23964921 -93897706 - Tigger3b DNA MER2_type -1 1230 247 229 280 0 0 chr9 23965081 23965131 -93897496 - Tigger3b DNA MER2_type -1181 50 1 398 375 118 16 chr9 23965134 23965438 -93897189 - L2 LINE L2 -4 3268 2934 2338 270 53 76 chr9 23965497 23966620 -93896007 - L2 LINE L2 0 3313 2195 593 230 199 11 chr9 23966654 23966845 -93895782 + MIR SINE MIR 32 258 -4 22 0 0 0 chr9 23967112 23967134 -93895493 + AT_rich Low_complexity Low_complexity 1 22 0 516 237 143 63 chr9 23967991 23968301 -93894326 + MLT1J LTR MaLR 172 607 -8 34 0 0 57 chr9 23968346 23968399 -93894228 + AT_rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr9 23968422 23968443 -93894184 + AT_rich Low_complexity Low_complexity 1 21 0 642 258 22 29 chr9 23968540 23968904 -93893723 + MLT1I LTR MaLR 1 407 -2 225 363 12 0 chr9 23969255 23969335 -93893292 + L2 LINE L2 3184 3264 -49 565 269 23 50 chr9 23970201 23970420 -93892207 - MIR SINE MIR -43 219 7 35 41 0 0 chr9 23970577 23970626 -93892001 + AT_rich Low_complexity Low_complexity 1 49 0 599 292 43 53 chr9 23970762 23971043 -93891584 + MLT1J LTR MaLR 3 280 -231 405 329 48 16 chr9 23973173 23973381 -93889246 - MER20B DNA MER1_type 0 219 3 37 0 0 0 chr9 23975424 23975461 -93887166 + AT_rich Low_complexity Low_complexity 1 37 0 1470 234 63 35 chr9 23975584 23976075 -93886552 + MLT1D LTR MaLR 1 505 0 610 251 13 18 chr9 23976850 23977077 -93885550 - L1M4 LINE L1 -2918 3228 3003 621 210 0 0 chr9 23977085 23977209 -93885418 + FRAM SINE Alu 23 146 -30 240 111 0 0 chr9 23977209 23977245 -93885382 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 660 208 49 6 chr9 23977246 23977429 -93885198 - L1M4 LINE L1 -3149 2997 2807 360 262 54 42 chr9 23977433 23977601 -93885026 - L1ME1 LINE L1 -21 6145 5976 21 0 0 0 chr9 23978078 23978099 -93884528 + AT_rich Low_complexity Low_complexity 1 21 0 4888 167 43 21 chr9 23978146 23979043 -93883584 - MER21A LTR ERV1 -6 925 9 283 308 50 12 chr9 23979149 23979311 -93883316 - L1ME1 LINE L1 -2144 5664 5489 496 158 32 21 chr9 23979312 23979407 -93883220 + MLT1G1 LTR MaLR 1 96 -499 659 155 0 0 chr9 23979415 23979518 -93883109 + AluSq/x SINE Alu 1 103 -210 337 178 51 68 chr9 23979882 23979928 -93882699 - L1M4 LINE L1 -2902 3244 3199 1507 220 13 32 chr9 23979928 23980306 -93882321 + MLT1A2 LTR MaLR 4 374 0 337 178 51 68 chr9 23980306 23980377 -93882250 - L1M4 LINE L1 -2947 3199 3129 21 57 0 0 chr9 23980455 23980490 -93882137 + AT_rich Low_complexity Low_complexity 1 35 0 12963 147 40 18 chr9 23980490 23982854 -93879773 - Tigger1 DNA MER2_type 0 2418 2 202 263 105 21 chr9 23983762 23983781 -93878846 + L2 LINE L2 1958 1974 -1340 2229 191 19 5 chr9 23983781 23984201 -93878426 + MSTB LTR MaLR 1 426 0 202 263 105 21 chr9 23984201 23984276 -93878351 + L2 LINE L2 1974 2060 -1254 1372 198 44 47 chr9 23984278 23984641 -93877986 - MER67D LTR ERV1 0 514 153 1116 212 22 22 chr9 23984656 23984863 -93877764 + L1MB1 LINE L1 3913 4122 -2024 1330 186 110 15 chr9 23984863 23985191 -93877436 - MER46B DNA MER2_type -2 234 1 1116 212 22 22 chr9 23985191 23985257 -93877370 + L1MB1 LINE L1 4121 4186 -1960 880 144 0 78 chr9 23985269 23985449 -93877178 + L1MB1 LINE L1 5455 5620 -551 4914 186 21 56 chr9 23985468 23986989 -93875638 + L1MB1 LINE L1 4195 5769 -399 247 32 0 0 chr9 23986989 23987020 -93875607 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 2396 50 0 0 chr9 23987020 23987301 -93875326 - AluY SINE Alu -1 311 1 4914 186 21 56 chr9 23987301 23987787 -93874840 + L1MB1 LINE L1 5767 6132 -36 209 206 57 35 chr9 23987400 23987441 -93875186 + (TA)n Simple_repeat Simple_repeat 1 40 -104 * 1759 164 35 35 chr9 23987441 23987814 -93874813 + L1MB1 LINE L1 5786 6158 -10 209 206 57 35 chr9 23987814 23987913 -93874714 + (TA)n Simple_repeat Simple_repeat 40 144 0 244 113 65 16 chr9 23987848 23987910 -93874717 + (TATAA)n Simple_repeat Simple_repeat 1 65 0 358 290 11 0 chr9 23987913 23988006 -93874621 - L2 LINE L2 -655 2659 2566 321 117 70 0 chr9 23988006 23988134 -93874493 + (TA)n Simple_repeat Simple_repeat 2 138 0 533 371 20 33 chr9 23988186 23988639 -93873988 + L2 LINE L2 2717 3156 -157 220 247 31 62 chr9 23988774 23988871 -93873756 + L2 LINE L2 3158 3251 -62 4972 156 61 8 chr9 23988974 23990097 -93872530 - L1PA15 LINE L1 -2 6163 4976 4752 96 24 63 chr9 23990101 23990893 -93871734 - L1PA8 LINE L1 -3 6169 5409 322 323 124 21 chr9 23991280 23991466 -93871161 + MIR SINE MIR 2 206 -56 503 305 93 49 chr9 23991471 23991717 -93870910 - MIR SINE MIR -5 257 1 189 0 0 0 chr9 23992483 23992504 -93870123 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 11904 95 3 7 chr9 23992504 23994946 -93867681 - L1PA7 LINE L1 -16 6138 3699 2037 134 13 7 chr9 23994946 23995253 -93867374 - AluSc SINE Alu 0 309 1 11904 95 3 7 chr9 23995253 23995302 -93867325 - L1PA7 LINE L1 -2455 3699 3651 1076 286 40 6 chr9 24045454 24045914 -93816713 - L1MC4 LINE L1 -98 7710 7222 3791 122 16 21 chr9 24045917 24046533 -93816094 - L1PA13 LINE L1 -4 6159 5547 1448 240 128 30 chr9 24046534 24047097 -93815530 - L1MC4 LINE L1 -961 7081 6464 186 209 0 0 chr9 24047524 24047567 -93815060 + GA-rich Low_complexity Low_complexity 5 47 0 254 245 0 0 chr9 24050709 24050762 -93811865 + MSTD LTR MaLR 2 54 -342 * 393 216 0 0 chr9 24050760 24050834 -93811793 - MSTD LTR MaLR -272 124 51 * 1004 241 96 25 chr9 24050814 24050923 -93811704 + MSTD LTR MaLR 51 151 -245 2398 92 0 0 chr9 24050923 24051229 -93811398 - AluSg SINE Alu -4 306 1 1004 241 96 25 chr9 24051229 24051442 -93811185 + MSTD LTR MaLR 151 396 0 2287 266 24 17 chr9 24051443 24052189 -93810438 + MSTD-int LTR MaLR 107 835 -816 2170 248 102 0 chr9 24052263 24052784 -93809843 + MSTD-int LTR MaLR 1159 1732 -3 932 202 126 60 chr9 24052790 24053126 -93809501 + MLT1A1 LTR MaLR 4 365 0 1891 198 19 0 chr9 24054595 24054954 -93807673 - MER47A DNA MER2_type 0 366 1 237 217 72 0 chr9 24055122 24055191 -93807436 - MIR SINE MIR -10 252 179 203 228 0 35 chr9 24055453 24055510 -93807117 + GA-rich Low_complexity Low_complexity 1 55 0 1867 121 0 11 chr9 24057013 24057285 -93805342 + AluSx SINE Alu 7 275 -37 231 286 55 0 chr9 24057352 24057443 -93805184 + L1ME2 LINE L1 259 354 -6209 411 317 73 31 chr9 24057923 24058210 -93804417 + L1ME2 LINE L1 825 1123 -5249 822 289 96 47 chr9 24058224 24058405 -93804222 + L1ME2 LINE L1 1041 1212 -5351 186 43 0 0 chr9 24058405 24058428 -93804199 + (CAA)n Simple_repeat Simple_repeat 2 24 0 822 289 96 47 chr9 24058428 24059126 -93803501 + L1ME2 LINE L1 1212 2118 -4445 1548 325 50 21 chr9 24059148 24060429 -93802198 - L1MEc LINE L1 -5006 1390 73 2548 234 109 55 chr9 24060460 24061850 -93800777 + L1ME2 LINE L1 4275 5754 -648 1608 88 0 0 chr9 24061865 24062080 -93800547 - L1PA8 LINE L1 -1947 4199 3985 7692 110 8 3 chr9 24062081 24064051 -93798576 + L1PA8 LINE L1 4193 6179 0 1347 255 13 83 chr9 24064051 24064593 -93798034 + L1ME2 LINE L1 5785 6288 -112 658 192 54 36 chr9 24064594 24064761 -93797866 + MER3 DNA MER1_type 2 124 -85 240 284 0 0 chr9 24064806 24064880 -93797747 + L1ME1 LINE L1 6088 6161 -5 521 325 46 16 chr9 24065295 24065489 -93797138 - MLT1I LTR MaLR -33 376 177 1990 136 0 0 chr9 24065726 24066035 -93796592 + AluSx SINE Alu 3 311 0 216 97 0 0 chr9 24067109 24067140 -93795487 + (TG)n Simple_repeat Simple_repeat 2 32 0 216 86 0 0 chr9 24067535 24067570 -93795057 + (GA)n Simple_repeat Simple_repeat 2 36 0 2013 147 0 0 chr9 24068030 24068322 -93794305 + AluSx SINE Alu 6 297 -15 375 265 180 32 chr9 24069798 24069987 -93792640 - MLT1J LTR MaLR -61 450 234 521 259 21 28 chr9 24070497 24070640 -93791987 + MIR SINE MIR 1 142 -120 306 234 43 21 chr9 24071843 24071937 -93790690 + MIR SINE MIR 110 205 -57 442 292 67 58 chr9 24073014 24073254 -93789373 + MIR SINE MIR 19 260 -2 294 219 41 8 chr9 24073442 24073565 -93789062 + (TA)n Simple_repeat Simple_repeat 2 128 0 418 290 125 27 chr9 24074057 24074281 -93788346 - MIR SINE MIR -4 258 13 436 305 122 64 chr9 24074490 24074818 -93787809 + L3 LINE CR1 1173 1519 -58 740 195 5 80 chr9 24074915 24075115 -93787512 + MLT1A1 LTR MaLR 1 185 -180 882 223 64 32 chr9 24075122 24075342 -93787285 - MLT1A1 LTR MaLR -13 352 126 22 0 0 0 chr9 24075866 24075888 -93786739 + AT_rich Low_complexity Low_complexity 1 22 0 2075 149 5 27 chr9 24076018 24076386 -93786241 - MER46B DNA MER2_type -1 235 1 2530 55 3 0 chr9 24078029 24078338 -93784289 - AluY SINE Alu -1 310 1 414 0 0 0 chr9 24078635 24078681 -93783946 + (TTTA)n Simple_repeat Simple_repeat 4 49 0 1998 55 0 12 chr9 24078681 24078934 -93783693 - AluY SINE Alu -32 279 30 222 306 144 69 chr9 24080585 24080745 -93781882 + MIR SINE MIR 21 192 -70 285 98 0 0 chr9 24080764 24080805 -93781822 + (T)n Simple_repeat Simple_repeat 1 41 0 374 360 34 17 chr9 24081471 24081649 -93780978 - MER5A DNA MER1_type -2 187 7 2139 100 0 53 chr9 24082203 24082524 -93780103 + AluSc SINE Alu 1 304 -5 287 338 0 0 chr9 24083932 24084012 -93778615 - MIR SINE MIR -84 124 45 435 285 51 7 chr9 24084157 24084294 -93778333 + MIR SINE MIR 26 168 -94 383 250 32 70 chr9 24086583 24086739 -93775888 + MIR SINE MIR 57 206 -56 261 0 0 0 chr9 24088892 24088921 -93773706 + (CAA)n Simple_repeat Simple_repeat 2 30 0 485 226 0 7 chr9 24089080 24089217 -93773410 + CT-rich Low_complexity Low_complexity 1 136 0 2464 75 128 8 chr9 24089224 24089624 -93773003 - LTR7 LTR ERV1 -2 448 1 2274 106 50 13 chr9 24089624 24090000 -93772627 - HERVH LTR ERV1 0 7713 7324 1343 143 19 0 chr9 24090000 24090216 -93772411 - HERVH LTR ERV1 -1894 5819 5600 3678 149 9 2 chr9 24090217 24090788 -93771839 - HERVH LTR ERV1 -2564 5149 4575 1317 104 0 0 chr9 24090785 24090968 -93771659 - HERVH LTR ERV1 -3043 4670 4488 * 3533 75 20 6 chr9 24090970 24091465 -93771162 - HERVH LTR ERV1 -3720 3993 3492 868 154 20 0 chr9 24091455 24091604 -93771023 - HERVH LTR ERV1 -4423 3290 3139 * 15209 99 27 8 chr9 24091597 24093869 -93768758 - HERVH LTR ERV1 -4726 2987 672 3747 100 0 2 chr9 24093836 24094355 -93768272 - HERVH LTR ERV1 -7195 518 1 * 2368 89 127 15 chr9 24094357 24094760 -93767867 - LTR7 LTR ERV1 -2 448 1 687 250 6 6 chr9 24095096 24095252 -93767375 - MLT1D LTR MaLR 0 505 350 6110 155 31 38 chr9 24095252 24095515 -93767112 - L1M2 LINE L1 -619 5672 5409 2141 132 0 3 chr9 24095515 24095819 -93766808 - AluSg SINE Alu -7 303 1 6110 155 31 38 chr9 24095819 24097118 -93765509 - L1M2 LINE L1 -882 5409 4133 206 310 0 17 chr9 24097151 24097209 -93765418 + L2 LINE L2 2995 3051 -262 246 348 107 27 chr9 24097377 24097489 -93765138 + L2 LINE L2 3143 3263 -9 182 265 15 0 chr9 24099726 24099794 -93762833 + (TATATG)n Simple_repeat Simple_repeat 3 71 0 397 236 81 61 chr9 24099999 24100178 -93762449 + MER77 LTR ERV1 181 321 -241 356 213 32 21 chr9 24100242 24100336 -93762291 + MER21B LTR ERV1 620 714 -149 716 292 43 26 chr9 24101002 24101235 -93761392 - MIR SINE MIR -24 238 2 312 341 120 55 chr9 24101321 24101737 -93760890 + L2 LINE L2 2817 3259 -13 321 68 0 0 chr9 24102065 24102109 -93760518 + (TG)n Simple_repeat Simple_repeat 2 45 0 371 320 0 10 chr9 24103197 24103297 -93759330 - MIR SINE MIR -161 101 3 683 201 6 0 chr9 24105166 24105330 -93757297 + GA-rich Low_complexity Low_complexity 3 167 0 403 291 82 0 chr9 24107110 24107244 -93755383 - MIR SINE MIR -48 214 70 1924 200 25 73 chr9 24107611 24108142 -93754485 - MLT1D LTR MaLR 0 505 1 191 273 36 0 chr9 24110088 24110143 -93752484 - MIR SINE MIR -186 76 20 305 344 24 0 chr9 24110157 24110282 -93752345 + MIR3 SINE MIR 56 183 -25 207 0 0 0 chr9 24111419 24111442 -93751185 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1007 47 78 0 chr9 24112515 24112644 -93749983 + MER85 DNA T2_type 1 139 0 318 261 22 0 chr9 24114709 24114801 -93747826 + CT-rich Low_complexity Low_complexity 3 96 0 287 311 246 12 chr9 24114872 24115193 -93747434 - L3b LINE CR1 -86 1497 1102 180 176 0 0 chr9 24115970 24116004 -93746623 + (TG)n Simple_repeat Simple_repeat 1 34 0 382 293 44 47 chr9 24116266 24116439 -93746188 - MIR3 SINE MIR -64 144 1 34 0 0 0 chr9 24116603 24116637 -93745990 + AT_rich Low_complexity Low_complexity 1 34 0 2007 145 14 0 chr9 24117424 24117720 -93744907 + AluSx SINE Alu 1 300 -12 5721 76 43 34 chr9 24118303 24119122 -93743505 + LTR12 LTR ERV1 1 826 0 231 387 60 2 chr9 24119355 24119470 -93743157 + MIR SINE MIR 8 127 -81 697 279 139 0 chr9 24119533 24119741 -93742886 + MIR SINE MIR 19 255 -7 757 250 144 45 chr9 24119950 24120577 -93742050 + L1ME3A LINE L1 5443 6160 -10 1309 320 34 2 chr9 24121270 24121682 -93740945 - LTR16A LTR ERVL -5 445 21 399 262 8 16 chr9 24122010 24122132 -93740495 - HERV16 LTR ERVL -321 4675 4555 * 529 311 98 26 chr9 24122114 24122378 -93740249 - HERV16 LTR ERVL -475 5010 4728 390 299 68 71 chr9 24122716 24123196 -93739431 - HERV16 LTR ERVL -1116 3880 3515 494 346 67 26 chr9 24123240 24123812 -93738815 - HERV16 LTR ERVL -1888 3766 3207 333 349 81 0 chr9 24123949 24124098 -93738529 - HERV16 LTR ERVL -4273 723 563 648 345 47 19 chr9 24124131 24124450 -93738177 - LTR16A LTR ERVL -88 362 35 221 222 19 37 chr9 24125504 24125558 -93737069 + MIR SINE MIR 210 262 0 276 149 0 0 chr9 24125700 24125747 -93736880 + (GGAA)n Simple_repeat Simple_repeat 2 48 0 236 298 10 39 chr9 24125765 24125869 -93736758 - MIR SINE MIR -148 114 14 180 0 0 0 chr9 24127221 24127241 -93735386 + (TTATA)n Simple_repeat Simple_repeat 3 22 0 315 0 0 0 chr9 24128004 24128039 -93734588 + (TG)n Simple_repeat Simple_repeat 1 35 0 211 359 16 0 chr9 24128421 24128485 -93734142 - L2 LINE L2 -67 3205 3141 358 286 65 36 chr9 24129711 24129879 -93732748 + MIR SINE MIR 78 250 -12 850 201 143 101 chr9 24130022 24130350 -93732277 - MER90 LTR ERV1 -233 342 1 376 272 22 92 chr9 24130386 24130570 -93732057 + L3 LINE CR1 1117 1287 -290 218 275 64 55 chr9 24130691 24130800 -93731827 + L3 LINE CR1 1440 1549 -28 19160 33 2 0 chr9 24131279 24134374 -93728253 - L1PA3 LINE L1 0 6155 3060 487 281 100 6 chr9 24135491 24135651 -93726976 + MIR SINE MIR 83 257 -5 24 53 0 0 chr9 24137134 24137172 -93725455 + AT_rich Low_complexity Low_complexity 1 38 0 2552 74 0 0 chr9 24137429 24137740 -93724887 + AluY SINE Alu 1 311 0 404 263 74 47 chr9 24138090 24138455 -93724172 + L1M4 LINE L1 2933 3307 -2839 409 332 71 8 chr9 24138703 24138971 -93723656 - HAL1b LINE L1 -713 635 351 4134 227 67 22 chr9 24139071 24140252 -93722375 - L1MB7 LINE L1 -31 6389 5263 1573 175 66 66 chr9 24140252 24140646 -93721981 - MSTD LTR MaLR 0 396 3 4134 227 67 22 chr9 24140646 24140659 -93721968 - L1MB7 LINE L1 -1157 5263 5252 1609 179 39 0 chr9 24140659 24140944 -93721683 + AluJb SINE Alu 1 296 -16 4134 227 67 22 chr9 24140944 24141806 -93720821 - L1MB7 LINE L1 -1168 5252 4238 1150 319 30 3 chr9 24141867 24142231 -93720396 + MER70B LTR ERVL 77 450 -128 1618 246 41 41 chr9 24142351 24142741 -93719886 - L1MB7 LINE L1 -2139 4243 3854 2084 168 28 17 chr9 24142741 24143099 -93719528 + THE1B LTR MaLR 3 364 0 10979 111 4 3 chr9 24143099 24144677 -93717950 + THE1B-int LTR MaLR 1 1580 0 2086 138 16 35 chr9 24144677 24145048 -93717579 + THE1B LTR MaLR 1 364 0 1618 246 41 41 chr9 24145048 24145172 -93717455 - L1MB7 LINE L1 -2525 3857 3727 1079 273 50 43 chr9 24145224 24146211 -93716416 - L1MB7 LINE L1 -3749 2638 1543 252 0 0 0 chr9 24146211 24146239 -93716388 + (T)n Simple_repeat Simple_repeat 1 28 0 1020 236 10 10 chr9 24146446 24146743 -93715884 - AluSx SINE Alu -1 311 15 3518 249 62 100 chr9 24147163 24147595 -93715032 - L1M4c LINE L1 -4644 2002 1555 2399 106 0 0 chr9 24147595 24147906 -93714721 - AluSx SINE Alu -1 311 1 3518 249 62 100 chr9 24147906 24149503 -93713124 - L1M4c LINE L1 -5091 1555 1 214 195 52 0 chr9 24150547 24150624 -93712003 + (TA)n Simple_repeat Simple_repeat 2 82 0 25 0 0 0 chr9 24150708 24150733 -93711894 + AT_rich Low_complexity Low_complexity 1 25 0 787 170 7 7 chr9 24152351 24152486 -93710141 + AluSp SINE Alu 2 136 -177 837 254 22 17 chr9 24152491 24152723 -93709904 - L1MB7 LINE L1 -228 5956 5724 222 174 0 0 chr9 24152786 24152832 -93709795 + CT-rich Low_complexity Low_complexity 4 49 0 385 330 28 23 chr9 24155099 24155317 -93707310 + MLT1J1 LTR MaLR 3 221 -225 22 0 0 0 chr9 24156342 24156364 -93706263 + AT_rich Low_complexity Low_complexity 1 22 0 367 368 72 34 chr9 24156578 24156869 -93705758 + L1ME2 LINE L1 410 711 -5408 2610 238 87 7 chr9 24156871 24157469 -93705158 + MER82 DNA MER2_type 1 646 -7 7155 34 4 2 chr9 24157705 24157954 -93704673 - L1PA4 LINE L1 0 6155 5908 261 0 0 0 chr9 24157954 24157983 -93704644 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 7155 34 4 2 chr9 24157983 24158981 -93703646 - L1PA4 LINE L1 -247 5908 4889 9454 54 0 0 chr9 24158982 24160187 -93702440 + L1P LINE L1 1189 2393 -3753 572 296 52 26 chr9 24160202 24160562 -93702065 + L1ME2 LINE L1 959 1241 -4878 200 350 137 8 chr9 24161782 24161899 -93700728 + L2 LINE L2 2946 3077 -195 21 57 0 0 chr9 24162394 24162429 -93700198 + AT_rich Low_complexity Low_complexity 1 35 0 494 276 77 46 chr9 24163391 24163652 -93698975 - L1MC4 LINE L1 -478 7564 7296 274 321 80 48 chr9 24163705 24163892 -93698735 - L2 LINE L2 -663 2651 2459 3015 113 13 2 chr9 24164314 24164781 -93697846 - L1PA13 LINE L1 -3 6160 5689 254 353 41 8 chr9 24165422 24165544 -93697083 - MIR SINE MIR -65 197 72 25 0 0 0 chr9 24166614 24166639 -93695988 + AT_rich Low_complexity Low_complexity 1 25 0 32568 29 6 5 chr9 24166639 24171448 -93691179 - L1PA3 LINE L1 -3 6152 1338 21 82 0 0 chr9 24173917 24173966 -93688661 + AT_rich Low_complexity Low_complexity 1 49 0 359 345 22 84 chr9 24174206 24174565 -93688062 - MLT1I LTR MaLR -1 408 72 2159 263 157 31 chr9 24174752 24174935 -93687692 + L1ME2 LINE L1 3767 3926 -2203 6412 58 2 11 chr9 24174935 24175780 -93686847 + L1PA7 LINE L1 5303 6140 -14 2159 263 157 31 chr9 24175780 24176920 -93685707 + L1ME2 LINE L1 3926 5257 -872 2745 23 0 0 chr9 24176973 24177283 -93685344 + AluY SINE Alu 1 310 -1 850 300 15 10 chr9 24177290 24177644 -93684983 + L1ME2 LINE L1 5336 5693 -454 649 220 17 0 chr9 24177704 24177948 -93684679 + L1ME2 LINE L1 5835 6138 -9 216 0 0 0 chr9 24178383 24178407 -93684220 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 226 48 0 48 chr9 24178596 24178638 -93683989 + (TA)n Simple_repeat Simple_repeat 2 41 0 2220 116 0 3 chr9 24181056 24181366 -93681261 + AluSc SINE Alu 1 309 0 22 0 0 0 chr9 24181817 24181839 -93680788 + AT_rich Low_complexity Low_complexity 1 22 0 216 273 71 40 chr9 24182479 24182578 -93680049 + MIR SINE MIR 66 167 -95 28 29 0 0 chr9 24182598 24182633 -93679994 + AT_rich Low_complexity Low_complexity 1 35 0 182 222 89 0 chr9 24182663 24182708 -93679919 - L2 LINE L2 -86 3227 3179 274 361 82 19 chr9 24183620 24183778 -93678849 - MIR SINE MIR -13 249 82 24 32 0 0 chr9 24184105 24184136 -93678491 + AT_rich Low_complexity Low_complexity 1 31 0 216 0 0 0 chr9 24185258 24185282 -93677345 + (A)n Simple_repeat Simple_repeat 1 24 0 252 279 68 94 chr9 24185718 24185983 -93676644 + HAL1b LINE L1 269 526 -822 231 36 0 0 chr9 24186016 24186044 -93676583 + (CA)n Simple_repeat Simple_repeat 1 28 0 189 211 39 19 chr9 24186389 24186441 -93676186 + L2 LINE L2 3261 3313 0 201 213 0 0 chr9 24187545 24187592 -93675035 + GA-rich Low_complexity Low_complexity 4 50 0 306 351 11 0 chr9 24188650 24188824 -93673803 - L1MC4 LINE L1 -158 7884 7709 340 346 110 24 chr9 24188861 24189271 -93673356 - L1M4 LINE L1 -2365 4017 3573 452 252 87 8 chr9 24189463 24189590 -93673037 + L2 LINE L2 2400 2536 -778 753 224 100 61 chr9 24189710 24190367 -93672260 - L1M4 LINE L1 -3779 2603 1936 1550 206 14 14 chr9 24190445 24190800 -93671827 + L1MA9 LINE L1 4568 4922 -1224 * 14872 46 1 2 chr9 24190796 24192658 -93669969 - L1PA5 LINE L1 -1419 4727 2868 7381 40 0 0 chr9 24192658 24194088 -93668539 + L1PA5 LINE L1 4724 6153 -1 289 261 33 0 chr9 24194100 24194192 -93668435 + L1MA9 LINE L1 4909 5003 -1143 * 1180 29 0 0 chr9 24194188 24194328 -93668299 - L1P2 LINE L1 -692 5462 5323 5957 162 13 13 chr9 24194350 24194474 -93668153 + L1MA9 LINE L1 5032 5154 -1158 2096 142 0 0 chr9 24194474 24194777 -93667850 - AluSx SINE Alu -9 303 1 5957 162 13 13 chr9 24194777 24195913 -93666714 + L1MA9 LINE L1 5154 6292 -20 4688 32 2 7 chr9 24196312 24196882 -93665745 + L1PA4 LINE L1 5583 6149 -6 28 61 0 0 chr9 24196884 24196933 -93665694 + AT_rich Low_complexity Low_complexity 1 49 0 2222 278 67 15 chr9 24197155 24198836 -93663791 - L1ME3 LINE L1 -207 6373 4604 247 24 24 24 chr9 24198952 24198993 -93663634 + (TTTG)n Simple_repeat Simple_repeat 4 44 0 267 262 0 0 chr9 24199440 24199523 -93663104 - L1ME3 LINE L1 -4628 1970 1873 2447 173 138 115 chr9 24199584 24200185 -93662442 - L1MC3 LINE L1 0 7785 7199 242 299 13 13 chr9 24200185 24200262 -93662365 - MLT1F1 LTR MaLR -456 111 35 2447 173 138 115 chr9 24200262 24200690 -93661937 - L1MC3 LINE L1 -586 7199 4640 2880 261 51 44 chr9 24200694 24201788 -93660839 - L1ME3 LINE L1 -4932 1113 12 332 315 97 35 chr9 24201841 24203079 -93659548 - L1MDa LINE L1 -4831 1384 56 695 244 109 58 chr9 24203142 24203573 -93659054 - HAL1b LINE L1 -278 1070 618 327 311 88 40 chr9 24203749 24203977 -93658650 - HAL1b LINE L1 -1037 311 73 180 324 73 0 chr9 24204843 24204911 -93657716 + MIR SINE MIR 29 101 -161 586 94 12 0 chr9 24206294 24206460 -93656167 - AluSg/x SINE Alu 0 364 198 38 75 0 0 chr9 24207107 24207187 -93655440 + AT_rich Low_complexity Low_complexity 1 80 0 23 33 0 0 chr9 24207264 24207294 -93655333 + AT_rich Low_complexity Low_complexity 1 30 0 191 366 73 24 chr9 24207882 24208005 -93654622 - L2 LINE L2 0 3313 3185 551 260 40 28 chr9 24208025 24208202 -93654425 - L2 LINE L2 0 3313 3135 482 234 11 0 chr9 24208270 24208364 -93654263 + MLT1H LTR MaLR 118 212 -337 1550 193 13 6 chr9 24208365 24208681 -93653946 + L1MA3 LINE L1 5988 6305 0 5145 162 39 3 chr9 24208992 24210398 -93652229 + L1MC1 LINE L1 4671 6113 -220 22 0 0 0 chr9 24210423 24210445 -93652182 + AT_rich Low_complexity Low_complexity 1 22 0 1147 160 0 89 chr9 24210627 24210670 -93651957 + MER46A DNA MER2_type 21 66 -2665 11571 189 32 8 chr9 24210670 24214039 -93648588 - L1PA13 LINE L1 -3 6160 2719 1147 160 0 89 chr9 24214039 24214232 -93648395 + MER46A DNA MER2_type 66 236 0 213 360 117 28 chr9 24214251 24214465 -93648162 - L2 LINE L2 -499 2815 2583 361 367 116 14 chr9 24214539 24214754 -93647873 + L2 LINE L2 2857 3093 -220 245 316 0 13 chr9 24214880 24214956 -93647671 + MLT1I LTR MaLR 86 160 -249 227 250 45 98 chr9 24216668 24216800 -93645827 + MLT1I LTR MaLR 274 398 -11 335 268 88 67 chr9 24216865 24217059 -93645568 + L2 LINE L2 3116 3313 0 741 223 55 45 chr9 24217145 24217436 -93645191 + L1MD2 LINE L1 4730 5023 -1123 * 13993 101 22 30 chr9 24217434 24219665 -93642962 - L1P LINE L1 -1845 4301 2089 6575 64 15 7 chr9 24219671 24221360 -93641267 + L1PA7 LINE L1 4447 6151 -3 3935 196 62 63 chr9 24221360 24221551 -93641076 + L1MD2 LINE L1 5009 5199 -1160 2146 73 3 23 chr9 24221551 24221854 -93640773 + AluY SINE Alu 1 297 -14 3935 196 62 63 chr9 24221854 24222327 -93640300 + L1MD2 LINE L1 5199 5671 -688 1931 151 0 3 chr9 24222327 24222631 -93639996 + AluSg SINE Alu 1 303 -7 3935 196 62 63 chr9 24222631 24223327 -93639300 + L1MD2 LINE L1 5671 6357 -2 549 205 0 82 chr9 24223312 24223483 -93639144 + L1ME LINE L1 5582 5738 -428 * 469 301 23 123 chr9 24223526 24223868 -93638759 - L2 LINE L2 -338 2976 2669 187 222 254 63 chr9 24225153 24225279 -93637348 - L2 LINE L2 0 3272 3123 581 322 86 17 chr9 24225393 24225685 -93636942 - L2 LINE L2 0 3313 3002 1134 197 86 8 chr9 24225685 24225919 -93636708 - MLT1D LTR MaLR 0 505 254 591 207 0 37 chr9 24225982 24226117 -93636510 - MLT1D LTR MaLR -375 130 1 234 268 14 14 chr9 24226319 24226390 -93636237 + CT-rich Low_complexity Low_complexity 2 72 0 358 329 121 26 chr9 24227159 24227615 -93635012 + L1MC4a LINE L1 6091 6589 -1219 1844 178 0 6 chr9 24228047 24228361 -93634266 - AluJb SINE Alu 0 312 1 205 273 0 0 chr9 24228881 24228936 -93633691 + (TATATG)n Simple_repeat Simple_repeat 1 55 0 195 345 53 35 chr9 24228949 24229062 -93633565 + MIR3 SINE MIR 2 116 -92 419 327 65 12 chr9 24229260 24229428 -93633199 - MIR SINE MIR -84 178 2 384 317 179 0 chr9 24229769 24229914 -93632713 - MER5A DNA MER1_type -1 188 18 22 0 0 0 chr9 24230636 24230658 -93631969 + AT_rich Low_complexity Low_complexity 1 22 0 2858 232 91 38 chr9 24231205 24232437 -93630190 + L1MDb LINE L1 785 2046 -4360 3049 274 30 60 chr9 24232469 24234392 -93628235 + L1M3a LINE L1 4 1864 -4171 1348 205 87 9 chr9 24234513 24234835 -93627792 + MLT1A1 LTR MaLR 19 365 0 671 195 36 61 chr9 24234859 24235073 -93627554 - MSTD LTR MaLR -2 394 164 247 241 36 24 chr9 24235135 24235218 -93627409 - MSTD LTR MaLR -267 107 24 2452 252 82 25 chr9 24235257 24236143 -93626484 - MSTD-int LTR MaLR -2 1733 712 * 5106 216 40 17 chr9 24236129 24236500 -93626127 + L1M3a LINE L1 1969 2330 -3704 366 115 0 0 chr9 24236500 24236561 -93626066 + (CA)n Simple_repeat Simple_repeat 2 62 0 5106 216 40 17 chr9 24236561 24237675 -93624952 + L1M3a LINE L1 2330 3489 -2545 398 345 126 5 chr9 24237987 24238210 -93624417 + MIR SINE MIR 3 252 -10 29 0 0 0 chr9 24238350 24238379 -93624248 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr9 24238482 24238503 -93624124 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 24238734 24238755 -93623872 + AT_rich Low_complexity Low_complexity 1 21 0 188 279 186 12 chr9 24238969 24239055 -93623572 + MIR SINE MIR 74 174 -88 324 188 0 0 chr9 24240115 24240179 -93622448 + (TA)n Simple_repeat Simple_repeat 1 64 0 271 349 64 0 chr9 24240406 24240515 -93622112 + MIR3 SINE MIR 82 197 -11 317 252 27 9 chr9 24241139 24241250 -93621377 + MLT1H LTR MaLR 18 130 -419 186 283 53 26 chr9 24241751 24241864 -93620763 + L2 LINE L2 2624 2739 -575 240 380 58 44 chr9 24242132 24242358 -93620269 + L2 LINE L2 2827 3055 -217 1834 154 27 0 chr9 24243198 24243496 -93619131 - AluSx SINE Alu -6 306 1 198 103 0 0 chr9 24243879 24243908 -93618719 + (TG)n Simple_repeat Simple_repeat 2 30 0 183 80 0 0 chr9 24243928 24243953 -93618674 + (CA)n Simple_repeat Simple_repeat 2 26 0 1939 143 3 10 chr9 24243955 24244255 -93618372 - AluSx SINE Alu -14 298 1 489 190 129 37 chr9 24244395 24244558 -93618069 - MER5B DNA MER1_type 0 178 1 2764 16 0 0 chr9 24244822 24245125 -93617502 + AluY SINE Alu 1 303 -8 309 95 0 0 chr9 24246008 24246050 -93616577 + MADE1 DNA Mariner 39 80 0 252 349 24 30 chr9 24246295 24246461 -93616166 + L2 LINE L2 3119 3283 -30 1059 177 39 155 chr9 24246949 24247362 -93615265 + MLT1A1 LTR MaLR 1 365 0 6778 225 78 28 chr9 24247462 24249103 -93613524 + MLT1A1-int LTR MaLR 13 1735 0 225 291 17 17 chr9 24250495 24250561 -93612066 - MER5A DNA MER1_type -1 188 112 349 197 103 43 chr9 24250789 24250906 -93611721 - L1ME3A LINE L1 -58 6112 5989 1430 171 8 4 chr9 24251031 24251295 -93611332 - L1MD3 LINE L1 -1 7994 7730 1739 212 3 3 chr9 24301430 24301751 -93560876 - MLT1A1 LTR MaLR -37 328 8 9720 46 2 1 chr9 24301972 24303180 -93559447 - L1PA5 LINE L1 -1500 4646 3438 7215 47 0 0 chr9 24303182 24304664 -93557963 + L1PA5 LINE L1 4656 6145 -9 180 0 0 0 chr9 24304664 24304684 -93557943 + (TTAAA)n Simple_repeat Simple_repeat 3 22 0 192 352 0 34 chr9 24304790 24304878 -93557749 + MIR3 SINE MIR 103 187 -21 2253 113 0 0 chr9 24305007 24305317 -93557310 + AluSg SINE Alu 1 310 0 971 291 58 3 chr9 24305591 24305918 -93556709 - MER113 DNA MER1_type? -173 348 4 591 308 56 19 chr9 24306496 24306762 -93555865 + L2 LINE L2 2003 2278 -1036 651 273 0 6 chr9 24306769 24306945 -93555682 + HERVL-B3 LTR ERVL 2 176 -5478 2085 227 68 4 chr9 24306948 24307406 -93555221 - ERVL LTR ERVL -2331 3433 2947 289 179 0 18 chr9 24307431 24307487 -93555140 - ERVL LTR ERVL -5514 250 196 * 2105 173 6 0 chr9 24307486 24307845 -93554782 - ERVL LTR ERVL -1965 3799 3439 5024 185 27 5 chr9 24307845 24308741 -93553886 + HERVL-B3 LTR ERVL 3799 4714 -1050 2183 185 36 6 chr9 24308728 24309291 -93553336 + HERVL-B3 LTR ERVL 5123 5757 -7 * 2590 193 5 77 chr9 24309291 24309888 -93552739 + MLT2B3 LTR ERVL 1 554 0 458 264 163 4 chr9 24309888 24310115 -93552512 + L2 LINE L2 2283 2545 -769 274 222 19 0 chr9 24310783 24310837 -93551790 + ERVL LTR ERVL 4588 4642 -1122 1061 232 50 21 chr9 24311003 24311439 -93551188 - MLT1D LTR MaLR -7 498 5 27 29 0 0 chr9 24311818 24311852 -93550775 + AT_rich Low_complexity Low_complexity 1 34 0 340 287 50 10 chr9 24311943 24312044 -93550583 - L2 LINE L2 -1 3312 3208 227 366 13 33 chr9 24312172 24312325 -93550302 - L2 LINE L2 -189 3083 2934 769 255 33 28 chr9 24312332 24312544 -93550083 + MER20 DNA MER1_type 7 219 0 33 80 0 0 chr9 24313013 24313088 -93549539 + AT_rich Low_complexity Low_complexity 1 75 0 219 330 21 10 chr9 24315359 24315456 -93547171 + MIR3 SINE MIR 104 201 -7 442 250 219 21 chr9 24315468 24315660 -93546967 + MER69 DNA AcHobo 2 231 -2295 329 167 149 16 chr9 24315668 24315762 -93546865 + MER69 DNA AcHobo 2435 2525 -1 21 0 0 0 chr9 24316354 24316375 -93546252 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr9 24316740 24316764 -93545863 + AT_rich Low_complexity Low_complexity 1 24 0 268 290 254 26 chr9 24317350 24317881 -93544746 + L2 LINE L2 2109 2760 -554 290 278 56 22 chr9 24317935 24318025 -93544602 + L2 LINE L2 3192 3284 -29 300 211 13 26 chr9 24318559 24318635 -93543992 - MER112 DNA MER1_type -183 77 3 22 0 0 0 chr9 24318732 24318754 -93543873 + AT_rich Low_complexity Low_complexity 1 22 0 1452 213 46 20 chr9 24318823 24319171 -93543456 + MLT1D LTR MaLR 1 357 -148 21 36 0 0 chr9 24320708 24320736 -93541891 + AT_rich Low_complexity Low_complexity 1 28 0 207 301 81 44 chr9 24320761 24320897 -93541730 + MIR3 SINE MIR 30 170 -38 209 374 65 0 chr9 24320927 24321034 -93541593 + MIR SINE MIR 26 139 -123 319 253 22 22 chr9 24321193 24321284 -93541343 - MIR SINE MIR -20 242 152 4246 142 47 5 chr9 24321294 24322046 -93540581 - L1PB4 LINE L1 -3 6153 5371 419 283 19 19 chr9 24322071 24322177 -93540450 - MIR SINE MIR -155 107 2 1479 214 14 0 chr9 24322803 24323097 -93539530 - AluJo SINE Alu -12 300 3 234 227 15 15 chr9 24324362 24324428 -93538199 + MER116 DNA Mariner 2 67 -13 533 200 15 156 chr9 24326468 24326673 -93535954 - MER45A DNA AcHobo 0 178 3 956 308 13 60 chr9 24326749 24327197 -93535430 - LTR16B LTR ERVL -2 462 36 301 266 128 11 chr9 24327732 24327826 -93534801 - L2 LINE L2 0 3272 3168 414 343 14 14 chr9 24327831 24327974 -93534653 - MER5A DNA MER1_type 0 189 47 1656 237 41 50 chr9 24328075 24328669 -93533958 + MLT1D LTR MaLR 1 626 0 2516 175 69 41 chr9 24328898 24329465 -93533162 - LTR49 LTR ERV1 -10 585 3 255 31 0 0 chr9 24329966 24329998 -93532629 + (TG)n Simple_repeat Simple_repeat 2 33 0 4021 156 17 10 chr9 24330136 24330833 -93531794 + MER50 LTR ERV1 1 702 -32 1597 197 109 93 chr9 24330843 24331402 -93531225 - LTR36 LTR ERV1 -43 568 1 823 166 198 28 chr9 24331512 24331545 -93531082 + MER39B LTR ERV1 3 29 -624 180 0 0 0 chr9 24331545 24331565 -93531062 + (CAG)n Simple_repeat Simple_repeat 3 22 0 823 166 198 28 chr9 24331565 24331748 -93530879 + MER39B LTR ERV1 29 256 -397 936 205 31 26 chr9 24331748 24331977 -93530650 + AluJo SINE Alu 72 301 -11 1365 145 5 5 chr9 24331977 24332188 -93530439 + MER39B LTR ERV1 247 457 -196 263 54 0 27 chr9 24332188 24332225 -93530402 - THE1B LTR MaLR 0 364 329 27 29 0 0 chr9 24332489 24332523 -93530104 + AT_rich Low_complexity Low_complexity 1 34 0 181 146 42 0 chr9 24332526 24332574 -93530053 + (CATATA)n Simple_repeat Simple_repeat 3 52 0 24 0 0 0 chr9 24333061 24333085 -93529542 + AT_rich Low_complexity Low_complexity 1 24 0 2106 230 132 30 chr9 24333294 24334386 -93528241 + L1ME1 LINE L1 4948 6161 -5 33 56 0 0 chr9 24335268 24335322 -93527305 + AT_rich Low_complexity Low_complexity 1 54 0 23 0 0 0 chr9 24335337 24335360 -93527267 + AT_rich Low_complexity Low_complexity 1 23 0 1536 161 39 25 chr9 24336188 24336473 -93526154 - MER89 LTR ERV1 -3 556 268 517 300 28 33 chr9 24336464 24336644 -93525983 - LTR33A LTR ERVL -340 183 5 * 1081 156 0 0 chr9 24337218 24337397 -93525230 + L1PA13 LINE L1 5982 6160 -3 598 148 19 28 chr9 24337447 24337555 -93525072 + FLAM_C SINE Alu 24 130 -13 723 242 149 0 chr9 24338079 24338307 -93524320 - MIR SINE MIR 0 262 2 4418 147 41 31 chr9 24339248 24340033 -93522594 + MER54B LTR ERVL 1 793 0 207 0 0 0 chr9 24340541 24340564 -93522063 + (TG)n Simple_repeat Simple_repeat 2 24 0 200 83 28 0 chr9 24340564 24340595 -93522032 + (TA)n Simple_repeat Simple_repeat 2 33 0 189 0 0 0 chr9 24341277 24341298 -93521329 + (T)n Simple_repeat Simple_repeat 1 21 0 2475 109 19 0 chr9 24341722 24342090 -93520537 + THE1C LTR MaLR 1 375 0 202 330 104 0 chr9 24342854 24342960 -93519667 - MIR SINE MIR 0 262 146 613 291 61 75 chr9 24343481 24343806 -93518821 - L1M4c LINE L1 -832 1911 1583 2309 95 0 0 chr9 24343806 24344112 -93518515 - AluY SINE Alu -5 306 1 613 291 61 75 chr9 24344112 24344238 -93518389 - L1M4c LINE L1 -1160 1583 1457 925 239 9 18 chr9 24344238 24344464 -93518163 - MER58A DNA MER1_type 0 224 1 613 291 61 75 chr9 24344464 24344893 -93517734 - L1M4c LINE L1 -1286 1457 810 195 69 0 0 chr9 24344912 24344941 -93517686 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1062 122 0 0 chr9 24345882 24346029 -93516598 - AluSx SINE Alu -39 273 127 1038 98 0 0 chr9 24346066 24346199 -93516428 - AluSx SINE Alu -180 133 1 367 329 29 29 chr9 24346294 24346431 -93516196 - MIR3 SINE MIR -24 184 48 288 0 0 0 chr9 24347220 24347252 -93515375 + (TG)n Simple_repeat Simple_repeat 2 33 0 186 43 0 0 chr9 24347251 24347274 -93515353 + (TCTA)n Simple_repeat Simple_repeat 4 26 0 * 464 231 0 66 chr9 24347298 24347419 -93515208 - FLAM_C SINE Alu -26 117 5 750 299 57 68 chr9 24347422 24347807 -93514820 - L2 LINE L2 -42 3271 2891 215 322 11 58 chr9 24347839 24347926 -93514701 - L2 LINE L2 -1 3271 3189 191 36 36 0 chr9 24347980 24348008 -93514619 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 305 298 46 20 chr9 24348641 24348792 -93513835 + L1ME4a LINE L1 5767 5921 -200 22 0 0 0 chr9 24348793 24348815 -93513812 + AT_rich Low_complexity Low_complexity 1 22 0 35 24 0 0 chr9 24348911 24348953 -93513674 + AT_rich Low_complexity Low_complexity 1 42 0 767 153 0 29 chr9 24348956 24349093 -93513534 + AluJb SINE Alu 171 303 -9 226 171 24 0 chr9 24349597 24349638 -93512989 + MER5A DNA MER1_type 7 48 -141 208 323 0 15 chr9 24350065 24350130 -93512497 - L2 LINE L2 -821 2493 2430 4102 72 24 0 chr9 24350524 24351065 -93511562 - MER41A LTR ERV1 0 554 1 1351 203 50 56 chr9 24351447 24351857 -93510770 - MER67C LTR ERV1 -241 273 1 3095 136 99 74 chr9 24352093 24352726 -93509901 + LTR8 LTR ERV1 1 649 -42 721 213 13 13 chr9 24352731 24352881 -93509746 - AluJo SINE Alu -157 155 6 343 260 62 5 chr9 24353157 24353349 -93509278 - L1MD2 LINE L1 -414 5945 5847 289 207 0 0 chr9 24353411 24353469 -93509158 - L1MC4 LINE L1 0 8042 7985 4316 225 96 24 chr9 24353470 24353688 -93508939 - L1MC4 LINE L1 -143 7899 7698 621 243 52 23 chr9 24353688 24353861 -93508766 - MER45A DNA AcHobo 0 178 1 4316 225 96 24 chr9 24353861 24354988 -93507639 - L1MC4 LINE L1 -344 7698 6457 21 36 0 0 chr9 24355839 24355867 -93506760 + AT_rich Low_complexity Low_complexity 1 28 0 1589 228 29 51 chr9 24355952 24356020 -93506607 + MLT1D LTR MaLR 7 75 -430 2824 149 52 47 chr9 24356020 24356612 -93506015 - LTR49 LTR ERV1 0 595 1 1589 228 29 51 chr9 24356612 24356994 -93505633 + MLT1D LTR MaLR 75 447 -58 24 85 0 0 chr9 24357197 24357244 -93505383 + AT_rich Low_complexity Low_complexity 1 47 0 445 283 74 30 chr9 24357324 24357561 -93505066 - L1ME4a LINE L1 -193 5928 5676 2084 130 0 25 chr9 24357561 24357877 -93504750 - AluSq SINE Alu -5 308 1 445 283 74 30 chr9 24357877 24357908 -93504719 - L1ME4a LINE L1 -445 5676 5648 479 212 0 10 chr9 24357910 24358009 -93504618 + MER49 LTR ERV1 1 98 -825 * 1394 129 27 65 chr9 24358005 24358268 -93504359 + MER4D LTR ERV1 324 576 -327 3090 97 14 0 chr9 24358269 24358704 -93503923 - L1PA10 LINE L1 0 6168 5728 2573 101 0 0 chr9 24358704 24359059 -93503568 - THE1A LTR MaLR 0 355 1 11469 96 6 5 chr9 24359059 24360628 -93501999 - THE1A-int LTR MaLR 0 1580 9 710 295 9 9 chr9 24360628 24360845 -93501782 - L1P3 LINE L1 -5648 227 11 1790 170 29 14 chr9 24360850 24361197 -93501430 + MER4D LTR ERV1 545 896 -7 32 26 0 0 chr9 24361399 24361438 -93501189 + AT_rich Low_complexity Low_complexity 1 39 0 381 387 106 24 chr9 24362099 24362430 -93500197 - L2 LINE L2 -2 3270 2913 22 0 0 0 chr9 24364249 24364271 -93498356 + AT_rich Low_complexity Low_complexity 1 22 0 457 309 62 33 chr9 24364904 24365114 -93497513 + MLT1I LTR MaLR 194 409 0 706 208 0 0 chr9 24365319 24365444 -93497183 + FLAM_C SINE Alu 1 125 -18 24 67 0 0 chr9 24365444 24365489 -93497138 + AT_rich Low_complexity Low_complexity 1 45 0 337 268 275 0 chr9 24365490 24365628 -93496999 - MIR SINE MIR -13 249 74 21 36 0 0 chr9 24366516 24366544 -93496083 + AT_rich Low_complexity Low_complexity 1 28 0 1886 133 7 0 chr9 24366746 24367017 -93495610 + AluSg SINE Alu 21 293 -17 2285 173 24 21 chr9 24367596 24368065 -93494562 + L1MA10 LINE L1 5863 6332 -2 6463 30 1 0 chr9 24368209 24368973 -93493654 - L1PA3 LINE L1 0 6155 5391 5847 30 0 42 chr9 24368967 24369733 -93492894 + L1PA3 LINE L1 4667 5400 -746 * 1328 203 51 0 chr9 24370098 24370380 -93492247 + AluJb SINE Alu 14 308 0 263 177 16 0 chr9 24370386 24370448 -93492179 + (TA)n Simple_repeat Simple_repeat 1 63 0 469 111 15 70 chr9 24370512 24370789 -93491838 + (CATATA)n Simple_repeat Simple_repeat 1 261 0 452 318 20 7 chr9 24370810 24370958 -93491669 + MIR SINE MIR 63 212 -50 1195 210 72 26 chr9 24370958 24371360 -93491267 + L1M4 LINE L1 2735 3159 -2987 1320 212 17 17 chr9 24371364 24371656 -93490971 + AluJo SINE Alu 1 292 -20 28 29 0 0 chr9 24371656 24371691 -93490936 + AT_rich Low_complexity Low_complexity 1 35 0 385 197 120 0 chr9 24371719 24371836 -93490791 + MER106B DNA MER1_type 903 1033 -26 3749 245 53 45 chr9 24371861 24372969 -93489658 + L1M4 LINE L1 3318 4416 -1730 2075 131 3 0 chr9 24372969 24373260 -93489367 + AluSx SINE Alu 2 293 -19 3749 245 53 45 chr9 24373260 24373573 -93489054 + L1M4 LINE L1 4416 4754 -1392 1347 233 45 22 chr9 24373573 24373930 -93488697 - MLT1A1 LTR MaLR 0 365 1 3749 245 53 45 chr9 24373930 24374049 -93488578 + L1M4 LINE L1 4754 4871 -1275 2364 244 38 65 chr9 24374053 24374837 -93487790 - L1M4 LINE L1 -5733 809 47 5530 126 11 29 chr9 24374842 24375221 -93487406 - L1PA15 LINE L1 -3 6162 5778 234 91 0 0 chr9 24375221 24375254 -93487373 + (CA)n Simple_repeat Simple_repeat 2 34 0 5530 126 11 29 chr9 24375254 24375730 -93486897 - L1PA15 LINE L1 -387 5778 5295 2357 58 3 61 chr9 24375730 24376060 -93486567 - AluY SINE Alu 0 311 1 5530 126 11 29 chr9 24376060 24376606 -93486021 - L1PA15 LINE L1 -870 5295 4783 1585 228 15 25 chr9 24377541 24377941 -93484686 + MSTD LTR MaLR 1 396 0 2263 110 0 7 chr9 24378691 24379000 -93483627 - AluSx SINE Alu -3 309 3 295 294 109 25 chr9 24379428 24379547 -93483080 + MIR SINE MIR 9 137 -125 275 307 18 18 chr9 24379553 24379667 -93482960 + MIR SINE MIR 78 191 -71 7200 40 1 1 chr9 24379667 24380675 -93481952 + L1PA5 LINE L1 5121 6128 -26 21 36 0 0 chr9 24381560 24381588 -93481039 + AT_rich Low_complexity Low_complexity 1 28 0 2070 171 49 3 chr9 24382295 24382680 -93479947 - MER57A LTR ERV1 0 403 1 1254 184 35 27 chr9 24382680 24382936 -93479691 - MER57A-int LTR ERV1 0 7537 7280 629 154 41 8 chr9 24382938 24383061 -93479566 - LTR54B LTR ERV1 -369 129 3 6602 185 29 29 chr9 24383061 24384383 -93478244 - MER57A-int LTR ERV1 -391 7146 5825 1305 143 4 13 chr9 24384711 24384941 -93477686 - MER57A-int LTR ERV1 -1716 5821 5594 328 192 19 0 chr9 24384941 24385045 -93477582 + (TA)n Simple_repeat Simple_repeat 2 107 0 4847 191 41 37 chr9 24385045 24386400 -93476227 - MER57A-int LTR ERV1 -1586 4745 3710 933 190 41 5 chr9 24386563 24386758 -93475869 + MER57-int LTR ERV1 4886 5087 -2450 278 206 29 0 chr9 24386852 24386920 -93475707 - MER41-int LTR ERV1 -3772 1164 1095 * 424 252 71 15 chr9 24386890 24387112 -93475515 - MER41-int LTR ERV1 -3591 1982 1096 399 216 0 0 chr9 24387237 24387311 -93475316 - MER34C LTR ERV1 -355 230 157 253 237 0 17 chr9 24387382 24387441 -93475186 - MER41-int LTR ERV1 -3222 2724 2667 3943 189 42 38 chr9 24387544 24388382 -93474245 - MER41-int LTR ERV1 -6694 843 3 283 279 29 10 chr9 24389108 24389212 -93473415 - L1MD3 LINE L1 -11 7984 7879 257 315 56 22 chr9 24390441 24390530 -93472097 - L2 LINE L2 0 3272 3181 25 51 0 0 chr9 24391843 24391882 -93470745 + AT_rich Low_complexity Low_complexity 1 39 0 1917 155 11 11 chr9 24392333 24392687 -93469940 + L1MA4 LINE L1 5937 6290 -10 208 363 113 19 chr9 24393103 24393263 -93469364 - L2 LINE L2 0 3272 3098 250 233 17 17 chr9 24394004 24394064 -93468563 - MIR SINE MIR -119 143 84 709 290 97 34 chr9 24394243 24394750 -93467877 - L1M4 LINE L1 -2261 3885 3347 190 0 0 0 chr9 24394985 24395006 -93467621 + (TTTA)n Simple_repeat Simple_repeat 2 92 0 1801 116 0 4 chr9 24395006 24395256 -93467371 - AluY SINE Alu -1 303 35 1035 76 8 0 chr9 24395269 24395400 -93467227 - AluSq/x SINE Alu -178 134 3 329 360 23 6 chr9 24395405 24395580 -93467047 - L1M4 LINE L1 -1481 4665 4488 227 170 80 0 chr9 24395755 24395867 -93466760 + (TA)n Simple_repeat Simple_repeat 1 121 0 876 226 39 42 chr9 24395877 24396183 -93466444 + L1MC4a LINE L1 6165 6469 -1339 948 173 6 34 chr9 24396216 24396395 -93466232 - FRAM SINE Alu -5 171 1 3574 256 62 17 chr9 24396395 24397667 -93464960 + L1MC4a LINE L1 6479 7807 -1 501 204 7 36 chr9 24397686 24397823 -93464804 + L1MD2 LINE L1 6215 6347 -12 1166 157 33 121 chr9 24397842 24397964 -93464663 + AluYb8 SINE Alu 16 147 -171 2216 77 3 13 chr9 24397964 24398263 -93464364 + AluY SINE Alu 1 296 -15 1166 157 33 121 chr9 24398263 24398472 -93464155 + AluYb8 SINE Alu 147 318 0 383 303 50 9 chr9 24398476 24398697 -93463930 + L1MEc LINE L1 1445 1674 -4722 3061 270 68 8 chr9 24399000 24399871 -93462756 - ERVL LTR ERVL -795 4969 4047 2164 121 0 9 chr9 24400634 24400949 -93461678 + AluSx SINE Alu 1 312 0 303 291 7 101 chr9 24402075 24402223 -93460404 - L2 LINE L2 -185 3087 2954 196 296 56 46 chr9 24402523 24402631 -93459996 - L2 LINE L2 -756 2558 2450 24 53 0 0 chr9 24403712 24403750 -93458877 + AT_rich Low_complexity Low_complexity 1 38 0 841 155 0 0 chr9 24403750 24403879 -93458748 + FRAM SINE Alu 34 162 -14 460 343 47 0 chr9 24403880 24404052 -93458575 - MIR SINE MIR -82 180 1 300 331 78 37 chr9 24404389 24404631 -93457996 + L2 LINE L2 2810 3061 -211 1556 198 44 32 chr9 24405872 24406215 -93456412 - MER7A DNA MER2_type -1 345 1 184 280 0 20 chr9 24406580 24406630 -93455997 + MIR3 SINE MIR 108 156 -52 243 149 40 0 chr9 24406665 24406739 -93455888 + (TA)n Simple_repeat Simple_repeat 2 78 0 399 345 15 45 chr9 24406806 24407006 -93455621 + MIR3 SINE MIR 14 207 -1 1297 212 82 137 chr9 24407733 24408281 -93454346 - MLT1E1 LTR MaLR 0 654 137 192 40 0 0 chr9 24408771 24408796 -93453831 + (TG)n Simple_repeat Simple_repeat 2 26 0 355 345 28 26 chr9 24408865 24409057 -93453570 - MIR SINE MIR -49 213 22 181 260 104 13 chr9 24409151 24409228 -93453399 + L2 LINE L2 3139 3222 -50 30 0 0 0 chr9 24409865 24409895 -93452732 + AT_rich Low_complexity Low_complexity 1 30 0 243 0 0 0 chr9 24410292 24410319 -93452308 + (TA)n Simple_repeat Simple_repeat 1 27 0 225 267 33 0 chr9 24410487 24410547 -93452080 - MIR SINE MIR -119 143 82 26 0 0 0 chr9 24411332 24411358 -93451269 + AT_rich Low_complexity Low_complexity 1 26 0 229 340 71 35 chr9 24411458 24411599 -93451028 - L2 LINE L2 0 3313 3168 208 321 49 0 chr9 24411846 24411927 -93450700 + L2 LINE L2 3229 3313 0 198 293 40 107 chr9 24412953 24413103 -93449524 - L3 LINE CR1 -549 1028 889 272 284 11 23 chr9 24413285 24413373 -93449254 - L2 LINE L2 -6 3307 3221 553 91 0 13 chr9 24413604 24413681 -93448946 - THE1B LTR MaLR -1 363 288 2125 146 8 40 chr9 24413681 24414057 -93448570 - THE1B LTR MaLR 0 364 1 10139 108 26 35 chr9 24414057 24415651 -93446976 - THE1B-int LTR MaLR 0 1580 1 2444 122 8 3 chr9 24415651 24416013 -93446614 - THE1B LTR MaLR 0 364 1 2655 19 7 3 chr9 24416999 24417309 -93445318 + AluY SINE Alu 1 311 0 695 210 41 39 chr9 24417405 24417560 -93445067 - MER45A DNA AcHobo 0 178 27 242 245 0 0 chr9 24417614 24417667 -93444960 + L2 LINE L2 3261 3313 0 1052 290 96 35 chr9 24418556 24419133 -93443494 + MER115 DNA AcHobo 3 543 -3488 290 26 26 0 chr9 24419133 24419172 -93443455 + (TG)n Simple_repeat Simple_repeat 2 41 0 1052 290 96 35 chr9 24419172 24419240 -93443387 + MER115 DNA AcHobo 543 4031 0 22 0 0 0 chr9 24422305 24422327 -93440300 + AT_rich Low_complexity Low_complexity 1 22 0 2201 97 0 3 chr9 24424422 24424712 -93437915 + AluSc SINE Alu 2 290 -19 1862 137 11 0 chr9 24425182 24425453 -93437174 + AluSg SINE Alu 1 274 -36 414 0 0 0 chr9 24425455 24425501 -93437126 + (TA)n Simple_repeat Simple_repeat 1 46 0 189 0 0 0 chr9 24425500 24425521 -93437106 + (CA)n Simple_repeat Simple_repeat 2 22 0 * 219 219 41 14 chr9 24426517 24426590 -93436037 + (TAGA)n Simple_repeat Simple_repeat 2 76 0 522 286 55 35 chr9 24426725 24426924 -93435703 - MIR SINE MIR -10 252 50 2627 204 19 51 chr9 24427302 24427983 -93434644 - L1MA9 LINE L1 -38 6274 5616 * 4186 199 29 8 chr9 24427981 24429140 -93433487 + L1MA9 LINE L1 4424 5603 -709 24 0 0 0 chr9 24429586 24429610 -93433017 + AT_rich Low_complexity Low_complexity 1 24 0 31 0 0 0 chr9 24430061 24430092 -93432535 + AT_rich Low_complexity Low_complexity 1 31 0 257 319 6 39 chr9 24430948 24431147 -93431480 - L1ME LINE L1 -380 5784 5589 303 200 52 58 chr9 24431240 24431395 -93431232 + MER96B DNA MER1_type? 193 346 -71 25 0 0 0 chr9 24431406 24431431 -93431196 + AT_rich Low_complexity Low_complexity 1 25 0 353 242 160 62 chr9 24431550 24431794 -93430833 - L1ME LINE L1 -343 5821 5554 7667 24 0 0 chr9 24431796 24432920 -93429707 + L1PA4 LINE L1 5016 6155 0 788 300 146 30 chr9 24432979 24433512 -93429115 + MLT1G1 LTR MaLR 1 595 0 1936 156 36 0 chr9 24434775 24435140 -93427487 + L1MA3 LINE L1 5927 6304 -1 8826 212 67 68 chr9 24435153 24440637 -93421990 - L1MC2 LINE L1 -62 6562 1094 246 62 0 0 chr9 24440637 24440669 -93421958 + (TA)n Simple_repeat Simple_repeat 2 33 0 8826 212 67 68 chr9 24440669 24441757 -93420870 - L1MC2 LINE L1 -5530 1094 6 5854 98 23 6 chr9 24441776 24443231 -93419396 - L1PA11 LINE L1 -3 6171 4692 1519 245 25 18 chr9 24443236 24443632 -93418995 - L1MD2 LINE L1 -12 6347 5949 255 61 0 0 chr9 24443757 24443790 -93418837 + (TA)n Simple_repeat Simple_repeat 2 34 0 216 0 0 0 chr9 24443790 24443814 -93418813 + (TG)n Simple_repeat Simple_repeat 2 25 0 1640 151 93 0 chr9 24443913 24444191 -93418436 + AluSx SINE Alu 2 305 -7 2338 90 3 0 chr9 24444690 24445000 -93417627 + AluSp SINE Alu 1 311 -2 2051 118 3 3 chr9 24445015 24445304 -93417323 + AluSg SINE Alu 6 294 -16 269 306 143 0 chr9 24447054 24447152 -93415475 - MIR SINE MIR 0 262 151 372 296 20 0 chr9 24447188 24447286 -93415341 + Charlie1 DNA MER1_type 38 137 -2624 1223 231 84 30 chr9 24447314 24447751 -93414876 + Charlie1 DNA MER1_type 2229 2698 -63 1778 189 0 6 chr9 24447751 24448063 -93414564 - AluJb SINE Alu -2 310 1 1223 231 84 30 chr9 24448063 24448127 -93414500 + Charlie1 DNA MER1_type 2698 2757 -4 2208 81 34 0 chr9 24448156 24448331 -93414296 - AluY SINE Alu -5 306 115 207 0 0 0 chr9 24448331 24448354 -93414273 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2208 81 34 0 chr9 24448354 24448474 -93414153 - AluY SINE Alu -196 115 1 1037 299 149 39 chr9 24448818 24449356 -93413271 + L1MA5 LINE L1 141 737 -6472 3718 255 35 19 chr9 24449493 24450620 -93412007 + L1MA5 LINE L1 1731 2874 -4335 5212 173 31 8 chr9 24450647 24452585 -93410042 + L1MA5 LINE L1 5378 7360 -2 2610 248 67 17 chr9 24452646 24453573 -93409054 + L1ME2 LINE L1 5194 6164 0 301 228 89 41 chr9 24453711 24453834 -93408793 + L1MC5 LINE L1 7784 7912 -49 201 310 70 20 chr9 24454256 24454356 -93408271 - MIR SINE MIR -102 106 1 305 327 0 47 chr9 24456305 24456412 -93406215 - MIR SINE MIR -140 122 21 249 244 44 22 chr9 24456495 24456585 -93406042 + L1MC4 LINE L1 6614 6705 -1337 216 163 0 0 chr9 24456603 24456646 -93405981 + (TA)n Simple_repeat Simple_repeat 2 44 0 228 211 0 0 chr9 24456693 24456750 -93405877 + L1MC4 LINE L1 6653 6709 -1333 495 304 77 32 chr9 24456790 24457010 -93405617 + MIR SINE MIR 21 250 -12 406 269 67 0 chr9 24457139 24457243 -93405384 - MIR SINE MIR -42 220 110 213 65 0 0 chr9 24458842 24458873 -93403754 + (TC)n Simple_repeat Simple_repeat 2 32 0 214 205 0 0 chr9 24459388 24459427 -93403200 + (TAA)n Simple_repeat Simple_repeat 3 41 0 1556 206 25 8 chr9 24462070 24462435 -93400192 - L1MB2 LINE L1 -9 6162 5792 3657 100 8 16 chr9 24462437 24463042 -93399585 + L1MB2 LINE L1 5177 5775 -388 9863 150 45 49 chr9 24463042 24464250 -93398377 + L1P3 LINE L1 10 1264 -5197 189 0 0 0 chr9 24464250 24464271 -93398356 + (CAA)n Simple_repeat Simple_repeat 1 21 0 9863 150 45 49 chr9 24464271 24465427 -93397200 + L1P3 LINE L1 1264 2423 -4038 2205 64 4 0 chr9 24465425 24465705 -93396922 + L1PA8A LINE L1 5419 5699 -432 * 947 187 65 32 chr9 24465707 24465953 -93396674 + L1MCa LINE L1 78 331 -6095 1629 166 13 0 chr9 24465973 24466275 -93396352 + L1MCa LINE L1 841 1146 -5280 * 2450 256 60 8 chr9 24466274 24467160 -93395467 + L1MB7 LINE L1 2639 3570 -2576 1589 127 8 93 chr9 24467162 24467539 -93395088 - MER4A LTR ERV1 0 664 261 556 143 10 10 chr9 24467539 24467637 -93394990 - MER4A LTR ERV1 -566 98 1 2061 250 19 30 chr9 24467644 24468269 -93394358 + L1MB7 LINE L1 3576 4193 -1953 1058 208 21 4 chr9 24468272 24468513 -93394114 + L1MC1 LINE L1 6080 6324 -9 2204 235 75 92 chr9 24468531 24468861 -93393766 + L1MB1 LINE L1 3521 3855 -2291 625 238 52 47 chr9 24468861 24469033 -93393594 + FAM SINE Alu 1 173 -2 2204 235 75 92 chr9 24469033 24469165 -93393462 + L1MB1 LINE L1 3855 3988 -2158 1789 175 17 0 chr9 24469165 24469462 -93393165 + AluSx SINE Alu 1 302 -10 2204 235 75 92 chr9 24469462 24470191 -93392436 + L1MB1 LINE L1 3988 4693 -1453 4581 182 17 13 chr9 24470292 24471198 -93391429 + L1MB1 LINE L1 5260 6168 0 1594 184 39 29 chr9 24471262 24471798 -93390829 + L1MB7 LINE L1 4989 5534 -650 2152 182 10 0 chr9 24471802 24472203 -93390424 - L1MB1 LINE L1 -208 5981 5577 543 140 9 65 chr9 24472207 24472314 -93390313 + LTR1B LTR ERV1 277 377 -449 2431 212 42 10 chr9 24472319 24472391 -93390236 + L1MB7 LINE L1 5544 5612 -572 4316 156 49 12 chr9 24472391 24473188 -93389439 + LTR1B LTR ERV1 1 826 0 2431 212 42 10 chr9 24473188 24473727 -93388900 + L1MB7 LINE L1 5612 6175 -9 23 86 0 0 chr9 24474029 24474087 -93388540 + AT_rich Low_complexity Low_complexity 1 58 0 340 359 0 0 chr9 24475626 24475729 -93386898 + MER5A DNA MER1_type 4 106 -83 239 347 0 0 chr9 24475778 24475850 -93386777 + (TATG)n Simple_repeat Simple_repeat 4 75 0 722 274 131 32 chr9 24476830 24477477 -93385150 - L1MEc LINE L1 -4398 1998 1288 2578 121 8 0 chr9 24477555 24477927 -93384700 + THE1C LTR MaLR 1 375 0 9465 132 49 8 chr9 24477927 24479444 -93383183 + THE1C-int LTR MaLR 1 1580 0 2268 141 28 0 chr9 24479444 24479806 -93382821 + THE1C LTR MaLR 1 372 -3 526 300 63 42 chr9 24479819 24480343 -93382284 - L1MEc LINE L1 -5370 1026 492 851 208 118 100 chr9 24483072 24483461 -93379166 + MSTD LTR MaLR 1 396 0 256 245 19 9 chr9 24485334 24485441 -93377186 - MIR3 SINE MIR -31 177 69 536 303 82 12 chr9 24486182 24486426 -93376201 + L3 LINE CR1 613 873 -704 464 303 87 40 chr9 24486643 24487013 -93375614 - L1MEc LINE L1 -3650 2776 2390 228 211 0 0 chr9 24487142 24487180 -93375447 + MER2 DNA MER2_type 2 39 -306 23086 61 9 1 chr9 24487205 24490179 -93372448 + L1PA4 LINE L1 3 3001 -3145 17872 36 2 1 chr9 24490280 24493231 -93369396 + L1PA4 LINE L1 3202 6153 -2 24 32 0 0 chr9 24493231 24493262 -93369365 + AT_rich Low_complexity Low_complexity 1 31 0 344 138 35 0 chr9 24493265 24493323 -93369304 + MER2 DNA MER2_type 214 273 -72 22 35 0 0 chr9 24493327 24493356 -93369271 + AT_rich Low_complexity Low_complexity 1 29 0 252 0 0 0 chr9 24493364 24493392 -93369235 + (TA)n Simple_repeat Simple_repeat 1 28 0 1955 142 21 0 chr9 24493410 24493699 -93368928 - AluSx SINE Alu -17 295 1 367 219 0 0 chr9 24493702 24493766 -93368861 + MER2 DNA MER2_type 282 345 0 30 59 0 0 chr9 24493773 24493824 -93368803 + AT_rich Low_complexity Low_complexity 1 51 0 363 272 78 0 chr9 24494223 24494326 -93368301 + MIR SINE MIR 62 172 -90 274 311 47 26 chr9 24494473 24494666 -93367961 - L1MEc LINE L1 -4938 1669 1473 639 241 14 90 chr9 24495010 24495222 -93367405 - MIR SINE MIR -10 252 57 2224 107 7 0 chr9 24495224 24495532 -93367095 - AluSx SINE Alu 0 312 3 242 108 0 0 chr9 24495538 24495575 -93367052 + MLT1E3 LTR MaLR 588 624 0 235 297 177 18 chr9 24498927 24499092 -93363535 + MIR SINE MIR 28 220 -42 225 154 0 0 chr9 24499187 24499226 -93363401 + (CATATA)n Simple_repeat Simple_repeat 1 39 0 238 158 61 114 chr9 24500178 24500292 -93362335 - L1ME4a LINE L1 -47 6074 5967 491 212 50 0 chr9 24500600 24500699 -93361928 + MSTB2 LTR MaLR 2 105 -352 1688 114 240 17 chr9 24500753 24501103 -93361524 - MSTA LTR MaLR 0 428 1 22 0 0 0 chr9 24501346 24501368 -93361259 + AT_rich Low_complexity Low_complexity 1 22 0 225 301 53 26 chr9 24503767 24503880 -93358747 - L3b LINE CR1 -114 1469 1354 409 356 29 10 chr9 24504097 24504305 -93358322 - MIR SINE MIR -26 236 25 442 280 53 7 chr9 24504842 24504992 -93357635 - MIR SINE MIR -48 214 58 22 0 0 0 chr9 24505132 24505154 -93357473 + AT_rich Low_complexity Low_complexity 1 22 0 225 318 0 45 chr9 24507097 24507163 -93355464 - L2 LINE L2 -76 3196 3134 5011 158 61 7 chr9 24507397 24508342 -93354285 - L1MC1 LINE L1 -7 6326 5332 203 345 83 14 chr9 24508366 24508511 -93354116 - L2 LINE L2 -402 2912 2758 1029 277 120 11 chr9 24509706 24510471 -93352156 + L1M4 LINE L1 2636 3484 -2662 2330 223 47 94 chr9 24510570 24511527 -93351100 - L1MEc LINE L1 -5496 930 19 21 0 0 0 chr9 24511541 24511562 -93351065 + AT_rich Low_complexity Low_complexity 1 21 0 1821 127 0 4 chr9 24511616 24511883 -93350744 - AluSg SINE Alu -44 266 1 494 292 63 69 chr9 24511895 24512622 -93350005 + L1M4 LINE L1 3633 4354 -1792 4910 32 2 3 chr9 24512622 24513218 -93349409 + L1PA3 LINE L1 5561 6155 0 494 292 63 69 chr9 24513218 24513448 -93349179 + L1M4 LINE L1 4354 4584 -1562 466 322 7 0 chr9 24514230 24514379 -93348248 + MIR SINE MIR 76 225 -37 270 232 40 30 chr9 24514562 24514661 -93347966 - L1MC5 LINE L1 -34 7927 7828 5741 161 18 4 chr9 24514795 24515858 -93346769 - L1MA4 LINE L1 -5 6295 5210 3157 162 25 79 chr9 24515864 24516648 -93345979 - L1MA4 LINE L1 -1058 5088 4347 787 296 91 57 chr9 24516649 24517278 -93345349 + L2 LINE L2 2627 3302 -11 289 330 35 9 chr9 24517527 24517642 -93344985 + LTR33 LTR ERVL 28 145 -376 254 333 187 27 chr9 24517710 24517935 -93344692 + LTR33 LTR ERVL 260 520 -1 211 276 35 17 chr9 24517975 24518033 -93344594 - L2 LINE L2 -4 3268 3210 236 156 44 0 chr9 24518255 24518300 -93344327 + (CATA)n Simple_repeat Simple_repeat 2 48 0 464 288 77 64 chr9 24518537 24518770 -93343857 + MIR SINE MIR 25 260 -2 24 0 0 0 chr9 24518963 24518987 -93343640 + AT_rich Low_complexity Low_complexity 1 24 0 2192 114 0 0 chr9 24518991 24519290 -93343337 - AluSx SINE Alu -13 299 1 341 304 56 24 chr9 24520361 24520486 -93342141 + MIR3 SINE MIR 14 142 -66 23 54 0 0 chr9 24520877 24520914 -93341713 + AT_rich Low_complexity Low_complexity 1 37 0 853 237 107 67 chr9 24521459 24521834 -93340793 - MLT1B LTR MaLR 0 390 1 24 53 0 0 chr9 24521874 24521912 -93340715 + AT_rich Low_complexity Low_complexity 1 38 0 223 188 16 16 chr9 24521919 24521983 -93340644 + (TA)n Simple_repeat Simple_repeat 1 64 0 1734 180 55 17 chr9 24524193 24524554 -93338073 - THE1C LTR MaLR 0 375 1 9392 124 42 30 chr9 24524554 24526114 -93336513 - THE1C-int LTR MaLR 0 1580 1 1764 159 48 40 chr9 24526114 24526486 -93336141 - THE1C LTR MaLR 0 375 1 2364 215 75 19 chr9 24526521 24527135 -93335492 + LTR48 LTR ERV1 1 648 -139 6883 119 7 12 chr9 24527217 24528437 -93334190 - L1MA1 LINE L1 -7 6295 5083 * 9294 186 19 39 chr9 24528432 24530562 -93332065 - L1MA1 LINE L1 -1665 4481 2395 304 314 29 54 chr9 24531284 24531526 -93331101 + L1MC4a LINE L1 5727 5962 -1846 2365 139 16 0 chr9 24531613 24531980 -93330647 - THE1C LTR MaLR -2 373 1 9263 130 58 9 chr9 24531980 24533486 -93329141 - THE1C-int LTR MaLR 0 1580 1 1462 164 48 77 chr9 24533486 24533941 -93328686 - THE1C LTR MaLR 0 375 1 906 280 153 4 chr9 24534102 24534631 -93327996 + L1M4 LINE L1 4460 5067 -1079 240 303 15 0 chr9 24534829 24534895 -93327732 + L1ME3A LINE L1 36 102 -6294 845 289 37 54 chr9 24535012 24535420 -93327207 + L1ME3A LINE L1 160 560 -5836 311 190 0 107 chr9 24535480 24535601 -93327026 + L1ME3A LINE L1 2177 2284 -4112 1293 296 133 33 chr9 24535724 24537051 -93325576 + L1ME3A LINE L1 4073 5671 -568 5645 81 5 15 chr9 24537051 24537842 -93324785 + L1PA8 LINE L1 5386 6168 -4 1293 296 133 33 chr9 24537842 24538473 -93324154 + L1ME3A LINE L1 5671 6237 -2 4129 168 44 14 chr9 24538564 24539813 -93322814 + L1MA6 LINE L1 4803 6079 -221 1945 142 3 7 chr9 24539907 24540210 -93322417 + AluSc SINE Alu 1 302 -7 199 391 45 18 chr9 24540545 24540655 -93321972 + L2 LINE L2 3158 3270 -2 23 0 0 0 chr9 24540919 24540942 -93321685 + AT_rich Low_complexity Low_complexity 1 23 0 231 361 113 38 chr9 24541031 24541164 -93321463 + MIR3 SINE MIR 30 172 -36 240 262 71 60 chr9 24541189 24541372 -93321255 - MER112 DNA MER1_type -45 215 31 391 292 55 72 chr9 24542399 24542745 -93319882 + HAL1 LINE L1 1314 1653 -854 320 258 121 40 chr9 24542955 24543079 -93319548 - MLT1J LTR MaLR -3 508 375 23 78 0 0 chr9 24543079 24543130 -93319497 + AT_rich Low_complexity Low_complexity 1 51 0 311 354 29 0 chr9 24543491 24543666 -93318961 - HAL1 LINE L1 -853 1654 1475 2867 0 0 0 chr9 24544098 24544409 -93318218 + AluYa5 SINE Alu 1 311 0 22 80 0 0 chr9 24545183 24545233 -93317394 + AT_rich Low_complexity Low_complexity 1 50 0 1111 133 0 0 chr9 24545397 24545563 -93317064 - AluSg/x SINE Alu -11 301 136 21 0 0 0 chr9 24545701 24545722 -93316905 + AT_rich Low_complexity Low_complexity 1 21 0 2454 58 7 0 chr9 24546909 24547218 -93315409 - AluY SINE Alu 0 311 1 1479 136 4 43 chr9 24547512 24547769 -93314858 - AluSg/x SINE Alu 0 312 66 738 323 74 35 chr9 24547770 24548396 -93314231 + L2 LINE L2 1771 3305 -8 260 282 146 0 chr9 24550934 24551037 -93311590 - L2 LINE L2 -4 3309 3192 2150 106 109 6 chr9 24552545 24552875 -93309752 + THE1B LTR MaLR 1 364 0 605 344 82 20 chr9 24553344 24553692 -93308935 - HAL1 LINE L1 -1314 1193 817 11107 90 20 0 chr9 24553692 24556059 -93306568 + L1PA7 LINE L1 3760 6153 -1 605 344 82 20 chr9 24556059 24556102 -93306525 - HAL1 LINE L1 -1690 817 778 263 255 38 71 chr9 24556112 24556296 -93306331 + L1MC4a LINE L1 4108 4285 -1861 586 281 28 65 chr9 24556486 24557442 -93305185 + L1MC4a LINE L1 4563 5476 -749 661 265 54 38 chr9 24557530 24557847 -93304780 + L1MC4a LINE L1 5612 5933 -1875 2224 228 113 51 chr9 24557859 24558784 -93303843 - LTR28 LTR ERV1 0 1229 1 304 291 30 91 chr9 24558816 24558981 -93303646 + L1MC4a LINE L1 5937 6091 -1717 2070 119 0 3 chr9 24560122 24560442 -93302185 + AluSx SINE Alu 1 319 0 270 348 43 21 chr9 24560569 24560710 -93301917 - MER5A DNA MER1_type -38 151 8 243 274 16 0 chr9 24561358 24561420 -93301207 + L2 LINE L2 3204 3266 -6 32 57 0 0 chr9 24561431 24561484 -93301143 + AT_rich Low_complexity Low_complexity 1 53 0 367 320 33 20 chr9 24561581 24561734 -93300893 + MIR SINE MIR 35 189 -73 304 280 67 13 chr9 24562140 24562290 -93300337 - L1MA10 LINE L1 -8 6326 6169 17114 183 42 5 chr9 24562462 24565733 -93296894 - L1 LINE L1 -3855 3710 319 4134 162 13 3 chr9 24565750 24566448 -93296179 + MER50 LTR ERV1 7 711 -23 1291 214 43 4 chr9 24566449 24566725 -93295902 - L1 LINE L1 -7260 305 19 473 171 74 30 chr9 24566725 24566873 -93295754 + LTR48 LTR ERV1 435 542 0 259 264 233 6 chr9 24566953 24567112 -93295515 + MIR SINE MIR 68 262 0 21 0 0 0 chr9 24567279 24567300 -93295327 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr9 24568327 24568354 -93294273 + AT_rich Low_complexity Low_complexity 1 27 0 481 278 112 6 chr9 24568756 24568925 -93293702 + MIR SINE MIR 70 256 -6 2210 187 52 41 chr9 24569374 24569915 -93292712 + L1MC3 LINE L1 7238 7784 -1 2030 201 36 27 chr9 24570171 24570609 -93292018 + MLT2B1 LTR ERVL 1 442 -78 1563 207 6 13 chr9 24570611 24570925 -93291702 - AluJo SINE Alu 0 312 1 284 0 28 0 chr9 24570947 24570983 -93291644 + (TC)n Simple_repeat Simple_repeat 2 38 0 * 360 0 0 0 chr9 24570982 24571022 -93291605 + (TA)n Simple_repeat Simple_repeat 1 40 0 306 0 0 0 chr9 24571023 24571057 -93291570 + (CA)n Simple_repeat Simple_repeat 2 35 0 199 328 107 25 chr9 24571210 24571332 -93291295 + MIR SINE MIR 90 221 -41 229 300 122 0 chr9 24571629 24571719 -93290908 - L2 LINE L2 -3 3269 3169 380 227 82 0 chr9 24571774 24571884 -93290743 + L1MC4 LINE L1 5764 5882 -1926 6905 240 32 66 chr9 24571892 24573941 -93288686 + L1M2 LINE L1 4 1982 -4867 18370 168 42 45 chr9 24573945 24575736 -93286891 + L1 LINE L1 19 1814 -5751 233 127 0 95 chr9 24575736 24575799 -93286828 - LTR13 LTR ERVK -287 720 664 18370 168 42 45 chr9 24575799 24577748 -93284879 + L1 LINE L1 1814 3809 -3756 3105 197 20 22 chr9 24577849 24578559 -93284068 + L1 LINE L1 5861 6568 -997 2194 265 73 46 chr9 24578547 24579456 -93283171 + L1MC4 LINE L1 6738 7670 -372 * 464 174 22 201 chr9 24579508 24579732 -93282895 + L1MC4 LINE L1 7826 8009 -33 576 217 42 146 chr9 24580146 24580524 -93282103 - MER57A LTR ERV1 -2 401 63 242 258 20 93 chr9 24580610 24580722 -93281905 - MER103 DNA DNA -16 150 50 2272 90 0 10 chr9 24580722 24581022 -93281605 + AluY SINE Alu 1 297 -14 242 258 20 93 chr9 24581022 24581060 -93281567 - MER103 DNA DNA -116 50 11 266 239 84 0 chr9 24581222 24581293 -93281334 - LTR16A LTR ERVL -309 141 65 21 0 0 0 chr9 24582311 24582332 -93280295 + AT_rich Low_complexity Low_complexity 1 21 0 250 280 68 23 chr9 24583379 24583511 -93279116 + MIR SINE MIR 107 244 -18 264 122 0 0 chr9 24583574 24583615 -93279012 + (ATG)n Simple_repeat Simple_repeat 1 41 0 423 298 40 16 chr9 24583687 24583811 -93278816 + MIR3 SINE MIR 53 179 -29 2091 83 7 14 chr9 24583916 24584194 -93278433 - AluSg SINE Alu 0 310 35 21 0 0 0 chr9 24584775 24584796 -93277831 + AT_rich Low_complexity Low_complexity 1 21 0 366 167 69 0 chr9 24585165 24585237 -93277390 + Charlie5 DNA MER1_type 30 106 -2506 239 290 32 0 chr9 24585271 24585333 -93277294 - MIR SINE MIR -66 142 79 489 47 0 0 chr9 24585383 24585447 -93277180 + (GA)n Simple_repeat Simple_repeat 1 64 0 1408 149 68 4 chr9 24585449 24585697 -93276930 - MLT2D LTR ERVL -150 264 1 28 48 0 0 chr9 24587668 24587710 -93274917 + AT_rich Low_complexity Low_complexity 1 42 0 26 50 0 0 chr9 24587876 24587916 -93274711 + AT_rich Low_complexity Low_complexity 1 40 0 359 372 37 18 chr9 24588004 24588222 -93274405 - MIR SINE MIR -19 243 22 225 258 31 113 chr9 24588447 24588544 -93274083 + L2 LINE L2 3224 3312 -1 1709 186 4 0 chr9 24589653 24589933 -93272694 - AluJo SINE Alu -31 281 1 252 282 118 30 chr9 24591556 24591861 -93270766 + HAL1b LINE L1 309 640 -708 27 0 0 0 chr9 24591901 24591928 -93270699 + AT_rich Low_complexity Low_complexity 1 27 0 368 306 18 96 chr9 24592198 24592588 -93270039 - MLT1H LTR MaLR -185 364 31 22 0 0 0 chr9 24592699 24592721 -93269906 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr9 24592763 24592798 -93269829 + AT_rich Low_complexity Low_complexity 1 35 0 747 170 0 0 chr9 24592809 24592921 -93269706 + FLAM_A SINE Alu 1 112 -30 410 343 47 33 chr9 24592958 24593410 -93269217 + L1M4 LINE L1 2131 2588 -3558 1065 318 24 37 chr9 24593557 24594020 -93268607 - MER90 LTR ERV1 -31 544 88 1932 215 64 52 chr9 24594078 24594637 -93267990 + MLT1F1 LTR MaLR 2 567 0 367 256 70 63 chr9 24594806 24595076 -93267551 + L1MC4 LINE L1 7769 8040 -2 752 271 104 38 chr9 24595103 24595624 -93267003 + L1ME4a LINE L1 5563 6117 -4 29 0 0 0 chr9 24595646 24595675 -93266952 + AT_rich Low_complexity Low_complexity 1 29 0 574 78 11 11 chr9 24597002 24597092 -93265535 + (TAGA)n Simple_repeat Simple_repeat 3 92 0 25 51 0 0 chr9 24597296 24597335 -93265292 + AT_rich Low_complexity Low_complexity 1 39 0 254 331 151 6 chr9 24597490 24597656 -93264971 + MIR SINE MIR 60 249 -13 5423 107 13 0 chr9 24598127 24598919 -93263708 - L1P LINE L1 -3741 2405 1604 548 211 31 8 chr9 24599535 24599663 -93262964 - MER103 DNA DNA -10 156 26 288 267 0 0 chr9 24600060 24600191 -93262436 + (TA)n Simple_repeat Simple_repeat 2 132 0 699 262 218 29 chr9 24600430 24600839 -93261788 - MLT1H LTR MaLR -17 532 47 354 138 0 0 chr9 24603745 24603803 -93258824 + (CA)n Simple_repeat Simple_repeat 1 58 0 232 330 11 33 chr9 24604451 24604542 -93258085 - L2 LINE L2 -18 3295 3207 656 320 181 18 chr9 24604596 24605013 -93257614 - L2 LINE L2 -216 3097 2601 1432 138 96 4 chr9 24605014 24605253 -93257374 + AluSq SINE Alu 9 269 -44 330 241 199 16 chr9 24605262 24605453 -93257174 - L2 LINE L2 -696 2618 2393 303 236 49 62 chr9 24605858 24606002 -93256625 + L1MC/D LINE L1 5347 5488 -2320 339 277 92 15 chr9 24606642 24606772 -93255855 - MER5A DNA MER1_type -8 181 42 214 183 33 17 chr9 24607043 24607103 -93255524 + (TTATA)n Simple_repeat Simple_repeat 4 64 0 583 365 4 9 chr9 24607916 24608146 -93254481 - MIR SINE MIR 0 262 34 21 0 0 0 chr9 24608182 24608203 -93254424 + AT_rich Low_complexity Low_complexity 1 21 0 229 171 0 0 chr9 24608409 24608450 -93254177 + L2 LINE L2 3261 3301 -12 1846 171 0 3 chr9 24608876 24609169 -93253458 - AluSx SINE Alu -20 292 1 23 0 0 0 chr9 24609280 24609303 -93253324 + AT_rich Low_complexity Low_complexity 1 23 0 193 286 101 79 chr9 24609563 24609741 -93252886 + MER5A DNA MER1_type 8 189 0 2698 152 8 2 chr9 24610632 24611112 -93251515 + L1MA4A LINE L1 5821 6303 0 821 281 31 4 chr9 24611673 24611901 -93250726 + MIR SINE MIR 28 261 -1 21 82 0 0 chr9 24612273 24612322 -93250305 + AT_rich Low_complexity Low_complexity 1 49 0 459 347 53 11 chr9 24613924 24614114 -93248513 + MIR SINE MIR 62 259 -3 195 69 0 0 chr9 24614767 24614796 -93247831 + (A)n Simple_repeat Simple_repeat 1 29 0 1248 241 64 60 chr9 24617406 24617921 -93244706 + MLT2B1 LTR ERVL 1 517 -3 1679 99 59 131 chr9 24618179 24618583 -93244044 - THE1C LTR MaLR 0 375 1 2572 202 72 2 chr9 24618796 24619312 -93243315 + MER68 LTR ERV1 1 552 -10 330 310 35 97 chr9 24620373 24620683 -93241944 + HAL1 LINE L1 512 802 -1705 726 239 22 45 chr9 24621109 24621377 -93241250 + L1MA9 LINE L1 6026 6287 -25 570 256 35 20 chr9 24621376 24621575 -93241052 + HAL1 LINE L1 1243 1444 -1063 * 844 133 0 0 chr9 24621597 24621717 -93240910 + AluJb SINE Alu 25 144 -168 557 183 0 17 chr9 24621717 24621832 -93240795 + AluY SINE Alu 192 304 -7 1707 280 62 34 chr9 24621855 24622583 -93240044 + HAL1 LINE L1 1455 2214 -293 339 78 0 0 chr9 24622583 24622634 -93239993 + (TG)n Simple_repeat Simple_repeat 2 52 0 1707 280 62 34 chr9 24622634 24622798 -93239829 + HAL1 LINE L1 2214 2372 -135 486 282 84 27 chr9 24623241 24623503 -93239124 + L2 LINE L2 1826 2102 -1212 350 173 40 27 chr9 24623507 24623582 -93239045 - MER58B DNA MER1_type 0 341 266 314 294 0 0 chr9 24623714 24623782 -93238845 - MER58B DNA MER1_type -273 68 1 1021 290 23 7 chr9 24623789 24624089 -93238538 + L2 LINE L2 2110 2414 -900 1275 273 42 15 chr9 24624110 24624516 -93238111 - LTR16C LTR ERVL -3 488 72 1105 261 99 79 chr9 24624574 24625041 -93237586 + L2 LINE L2 2553 3041 -272 1958 144 13 7 chr9 24625041 24625346 -93237281 - AluSx SINE Alu -5 307 1 1105 261 99 79 chr9 24625346 24625624 -93237003 + L2 LINE L2 3041 3312 -1 194 0 39 0 chr9 24626444 24626470 -93236157 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 649 174 0 47 chr9 24626470 24626513 -93236114 - L1MB1 LINE L1 -5 6163 6120 1722 176 25 0 chr9 24626513 24626797 -93235830 - AluJb SINE Alu -20 292 2 649 174 0 47 chr9 24626797 24626902 -93235725 - L1MB1 LINE L1 -48 6120 6022 396 326 25 41 chr9 24627884 24628080 -93234547 + L2 LINE L2 2290 2482 -832 33 25 0 0 chr9 24628093 24628133 -93234494 + AT_rich Low_complexity Low_complexity 1 40 0 259 303 37 21 chr9 24629631 24629819 -93232808 - L1MB1 LINE L1 -240 5881 5691 495 203 68 0 chr9 24629846 24629964 -93232663 + L1MC4 LINE L1 7914 8039 -3 2572 53 0 0 chr9 24630359 24630663 -93231964 - AluY SINE Alu -7 304 1 305 321 53 63 chr9 24630731 24630921 -93231706 - MIR3 SINE MIR -1 207 20 1828 144 76 17 chr9 24630941 24631295 -93231332 + THE1C LTR MaLR 1 375 0 240 295 39 101 chr9 24631558 24631687 -93230940 - L2 LINE L2 -9 3304 3184 2226 23 0 0 chr9 24633396 24633655 -93228972 - L1PA3 LINE L1 0 6155 5897 239 269 0 19 chr9 24633719 24633771 -93228856 - L2 LINE L2 -12 3260 3210 326 321 45 15 chr9 24633774 24633908 -93228719 - MIR SINE MIR -118 144 7 382 304 0 17 chr9 24635544 24635659 -93226968 - MIR SINE MIR -97 165 53 180 111 0 0 chr9 24637318 24637345 -93225282 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2041 104 74 0 chr9 24637347 24637673 -93224954 - L1PA11 LINE L1 -11 6163 5814 2230 71 6 74 chr9 24637673 24638020 -93224607 - L1PA7 LINE L1 0 6154 5827 17518 112 4 10 chr9 24638021 24641257 -93221370 - L1PA7 LINE L1 -244 6225 3008 12834 102 6 19 chr9 24641253 24643302 -93219325 - L1PA7 LINE L1 -4416 2045 2 * 2008 143 153 8 chr9 24643426 24643798 -93218829 - MSTA LTR MaLR -2 426 1 22 35 0 0 chr9 24645203 24645232 -93217395 + AT_rich Low_complexity Low_complexity 1 29 0 286 283 178 67 chr9 24645462 24645642 -93216985 + MIR SINE MIR 49 248 -14 24 32 0 0 chr9 24645845 24645876 -93216751 + AT_rich Low_complexity Low_complexity 1 31 0 236 311 97 29 chr9 24646716 24646819 -93215808 + L2 LINE L2 3102 3211 -61 470 216 84 26 chr9 24646972 24647127 -93215500 + L1P5 LINE L1 5499 5669 -482 566 253 63 17 chr9 24647156 24647393 -93215234 - L1M4 LINE L1 -2591 4617 4370 1864 157 11 0 chr9 24647444 24647731 -93214896 - AluSx SINE Alu -22 290 1 5293 154 28 13 chr9 24647750 24648724 -93213903 - L1MA4 LINE L1 -5 6997 6010 2028 202 20 11 chr9 24648717 24649177 -93213450 - L1MA4 LINE L1 -1842 5006 4543 * 4952 233 65 11 chr9 24649280 24650713 -93211914 - L1MA4 LINE L1 -4522 2327 816 611 310 72 30 chr9 24650720 24651008 -93211619 - L1M4 LINE L1 -5487 1722 1237 29 28 0 0 chr9 24651048 24651084 -93211543 + AT_rich Low_complexity Low_complexity 1 36 0 1044 246 74 26 chr9 24651204 24651634 -93210993 - L1M4 LINE L1 -3141 3005 2555 202 281 114 44 chr9 24652714 24652828 -93209799 - L2 LINE L2 0 3313 3192 1827 146 7 23 chr9 24653586 24653888 -93208739 - AluJb SINE Alu -15 297 1 617 320 86 5 chr9 24654033 24654255 -93208372 - MIR SINE MIR 0 262 23 996 176 143 52 chr9 24654455 24654545 -93208082 + AluJb SINE Alu 1 81 -221 306 0 0 0 chr9 24654545 24654579 -93208048 + (CA)n Simple_repeat Simple_repeat 1 34 0 996 176 143 52 chr9 24654579 24654760 -93207867 + AluJb SINE Alu 81 297 -5 440 238 86 27 chr9 24654940 24655119 -93207508 - L1MA10 LINE L1 0 6170 5980 2121 211 119 27 chr9 24655195 24655859 -93206768 - MER50 LTR ERV1 0 734 10 2006 199 58 40 chr9 24655876 24656433 -93206194 - L1ME2 LINE L1 -169 5995 5429 545 122 0 71 chr9 24656741 24656839 -93205788 - MSTB1 LTR MaLR -341 91 1 198 71 0 0 chr9 24656861 24656889 -93205738 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 22 80 0 0 chr9 24657920 24657970 -93204657 + AT_rich Low_complexity Low_complexity 1 50 0 21 36 0 0 chr9 24659841 24659869 -93202758 + AT_rich Low_complexity Low_complexity 1 28 0 29 0 0 0 chr9 24659880 24659909 -93202718 + AT_rich Low_complexity Low_complexity 1 29 0 2139 127 0 0 chr9 24660121 24660429 -93202198 - AluSg SINE Alu -2 308 1 1352 202 18 57 chr9 24660456 24660792 -93201835 + LTR8A LTR ERV1 402 724 -3 235 310 14 0 chr9 24660932 24661003 -93201624 + MIR SINE MIR 164 235 -27 236 143 29 29 chr9 24661677 24661747 -93200880 + L1ME4a LINE L1 6047 6116 -5 7963 74 16 14 chr9 24662633 24663222 -93199405 - L1P LINE L1 -2101 4045 3452 2854 3 0 0 chr9 24663222 24663533 -93199094 + AluYb8 SINE Alu 1 311 -7 7963 74 16 14 chr9 24663533 24664088 -93198539 - L1P LINE L1 -2694 3452 2899 2405 90 0 0 chr9 24664088 24664399 -93198228 - AluY SINE Alu 0 311 1 6542 72 12 3 chr9 24664412 24665813 -93196814 + L1PA7 LINE L1 4738 6149 -5 417 312 98 33 chr9 24667015 24667230 -93195397 + MIR SINE MIR 18 246 -16 2068 189 54 11 chr9 24668428 24669301 -93193326 + LTR28 LTR ERV1 1 1019 -1 628 269 47 2 chr9 24669529 24669724 -93192903 + MIR SINE MIR 32 238 -24 595 222 6 62 chr9 24670555 24670717 -93191910 + MER5A DNA MER1_type 36 188 -1 1571 191 31 14 chr9 24670773 24671123 -93191504 + L1MA9 LINE L1 5782 6137 -175 1292 115 0 0 chr9 24671123 24671305 -93191322 - AluSg/x SINE Alu -1 311 130 653 100 91 0 chr9 24671311 24671421 -93191206 + L1MA9 LINE L1 6184 6303 -9 22 35 0 0 chr9 24672308 24672337 -93190290 + AT_rich Low_complexity Low_complexity 1 29 0 1522 199 6 29 chr9 24672648 24672959 -93189668 + AluJo SINE Alu 1 304 -8 233 304 36 22 chr9 24673289 24673427 -93189200 - HAL1b LINE L1 -341 1007 868 * 624 164 86 125 chr9 24673423 24673703 -93188924 - L1MC5 LINE L1 -1002 6959 6691 21 57 0 0 chr9 24673719 24673754 -93188873 + AT_rich Low_complexity Low_complexity 1 35 0 951 161 11 33 chr9 24674045 24674225 -93188402 - AluSg/x SINE Alu 0 312 137 315 257 20 118 chr9 24674304 24674456 -93188171 - L2 LINE L2 -2 3311 3175 25 0 0 0 chr9 24674801 24674826 -93187801 + AT_rich Low_complexity Low_complexity 1 25 0 297 397 38 5 chr9 24675322 24675506 -93187121 - MIR SINE MIR -62 200 11 247 281 46 72 chr9 24675746 24675899 -93186728 - HAL1 LINE L1 -1134 1373 1225 213 150 0 25 chr9 24676112 24676152 -93186475 + (TTC)n Simple_repeat Simple_repeat 2 40 0 449 245 48 20 chr9 24676723 24676870 -93185757 - LTR33 LTR ERVL -2 519 369 252 0 0 0 chr9 24677277 24677305 -93185322 + (TG)n Simple_repeat Simple_repeat 2 29 0 870 304 9 69 chr9 24677747 24678210 -93184417 + L2 LINE L2 2879 3313 0 2142 153 89 0 chr9 24678846 24679239 -93183388 + MSTA LTR MaLR 1 428 0 241 345 91 0 chr9 24679279 24679389 -93183238 + MER91C DNA MER1_type 10 129 -11 276 207 122 24 chr9 24680080 24680162 -93182465 + L1MA10 LINE L1 5853 5942 -247 804 249 0 0 chr9 24680170 24680347 -93182280 + FRAM SINE Alu 1 176 0 1369 215 76 39 chr9 24680347 24680729 -93181898 + L1MA10 LINE L1 5938 6333 -1 251 206 59 88 chr9 24682366 24682468 -93180159 - L3 LINE CR1 -820 757 659 2421 79 0 0 chr9 24682655 24682960 -93179667 + AluY SINE Alu 1 305 -6 360 293 51 37 chr9 24683175 24683362 -93179265 - MIR SINE MIR -62 146 8 210 71 0 0 chr9 24683892 24683920 -93178707 + (A)n Simple_repeat Simple_repeat 1 28 0 241 188 21 0 chr9 24684493 24684541 -93178086 + A-rich Low_complexity Low_complexity 2 50 0 635 226 6 28 chr9 24685265 24685442 -93177185 + L1ME4a LINE L1 5762 5934 -187 313 278 145 40 chr9 24686430 24686922 -93175705 + L1P LINE L1 1112 1952 -846 370 252 42 103 chr9 24688242 24688610 -93174017 + L1MEc LINE L1 2109 2413 -3802 202 75 38 57 chr9 24688614 24688667 -93173960 + (TA)n Simple_repeat Simple_repeat 2 53 0 1134 263 49 80 chr9 24688667 24689367 -93173260 + L1MEc LINE L1 2420 3097 -3118 303 245 122 45 chr9 24689393 24689638 -93172989 - L1M4 LINE L1 -2154 3992 3729 231 275 0 33 chr9 24689864 24689955 -93172672 - L1M4 LINE L1 -1304 4842 4755 1119 258 67 80 chr9 24689991 24690231 -93172396 - L1M4 LINE L1 -1608 4538 4296 2178 117 0 9 chr9 24690231 24690547 -93172080 - AluSq SINE Alu 0 313 1 1119 258 67 80 chr9 24690547 24691169 -93171458 - L1M4 LINE L1 -1850 4296 3687 221 214 55 41 chr9 24691923 24692068 -93170559 + (TTATA)n Simple_repeat Simple_repeat 1 147 0 1925 130 149 11 chr9 24692250 24692626 -93170001 - MSTA LTR MaLR 0 428 1 421 286 21 43 chr9 24696627 24696767 -93165860 - L2 LINE L2 0 3272 3136 475 298 44 24 chr9 24696807 24697012 -93165615 - L2 LINE L2 -882 2432 2224 494 350 6 0 chr9 24697255 24697432 -93165195 - MIR SINE MIR -7 255 78 551 202 24 0 chr9 24697565 24697820 -93164807 + (TA)n Simple_repeat Simple_repeat 1 261 0 183 395 55 0 chr9 24698139 24698248 -93164379 - MIR SINE MIR -78 130 16 270 0 0 0 chr9 24698250 24698280 -93164347 + (TG)n Simple_repeat Simple_repeat 1 30 0 284 263 17 85 chr9 24698930 24699048 -93163579 - MIR SINE MIR -46 216 107 1240 269 79 30 chr9 24699241 24699672 -93162955 - LTR16B LTR ERVL -12 452 1 263 301 130 0 chr9 24700228 24700365 -93162262 - MIR SINE MIR -27 181 34 23 68 0 0 chr9 24700694 24700738 -93161889 + AT_rich Low_complexity Low_complexity 1 44 0 180 0 0 0 chr9 24702828 24702848 -93159779 + (A)n Simple_repeat Simple_repeat 1 20 0 2725 118 49 5 chr9 24703186 24703611 -93159016 + MLT2A1 LTR ERVL 1 444 0 211 292 202 0 chr9 24703703 24703792 -93158835 - MIR SINE MIR 0 262 156 231 380 65 19 chr9 24704385 24704601 -93158026 - L2 LINE L2 -468 2846 2621 1388 129 0 0 chr9 24705016 24705210 -93157417 - AluSg/x SINE Alu -21 291 98 4765 58 28 0 chr9 24705640 24706247 -93156380 - L1PA7 LINE L1 -2 6152 5529 21 0 0 0 chr9 24706426 24706447 -93156180 + AT_rich Low_complexity Low_complexity 1 21 0 6446 171 56 39 chr9 24707071 24708349 -93154278 - HSMAR2 DNA Mariner -1 1301 2 283 306 28 19 chr9 24708485 24708593 -93154034 + GA-rich Low_complexity Low_complexity 3 111 0 287 331 25 38 chr9 24708794 24708954 -93153673 + MIR SINE MIR 103 260 -2 288 317 0 27 chr9 24709226 24709349 -93153278 + MER5A DNA MER1_type 3 111 -67 720 292 31 4 chr9 24709552 24709778 -93152849 + MIR SINE MIR 31 262 0 2520 136 82 17 chr9 24712779 24713241 -93149386 + LTR22B LTR ERVK 1 492 0 495 306 50 70 chr9 24713342 24713584 -93149043 - L3 LINE CR1 -161 1416 1180 1209 286 97 24 chr9 24715743 24717009 -93145618 + L1ME3A LINE L1 1656 3055 -3160 2819 12 0 19 chr9 24717018 24717342 -93145285 + AluYb8 SINE Alu 1 318 0 2088 170 80 15 chr9 24717434 24717823 -93144804 + MSTA LTR MaLR 15 428 0 8960 182 16 6 chr9 24717823 24719457 -93143170 + MSTA-int LTR MaLR 1 1650 -1 1866 165 86 34 chr9 24719458 24719865 -93142762 + MSTA LTR MaLR 1 428 0 559 263 46 18 chr9 24719867 24720194 -93142433 + L1ME3A LINE L1 3133 3468 -2747 294 29 0 0 chr9 24720326 24720361 -93142266 + (TG)n Simple_repeat Simple_repeat 2 36 0 747 297 62 27 chr9 24720391 24720906 -93141721 + L1ME3A LINE L1 3697 4229 -1986 2605 183 8 17 chr9 24721073 24721599 -93141028 + L1MB7 LINE L1 5643 6163 -21 1549 260 22 28 chr9 24721606 24722103 -93140524 + L1ME3A LINE L1 5486 5979 -260 2016 119 0 30 chr9 24722103 24722406 -93140221 + AluSg SINE Alu 1 294 -16 344 247 49 0 chr9 24722406 24722487 -93140140 + L1MC4 LINE L1 6619 6703 -1339 782 232 73 24 chr9 24722504 24722750 -93139877 + L1ME3A LINE L1 5977 6234 -5 235 302 163 20 chr9 24723002 24723204 -93139423 - L3 LINE CR1 -1146 431 201 7507 35 0 0 chr9 24723206 24724123 -93138504 + L1PA3 LINE L1 5236 6152 -3 22 0 0 0 chr9 24724123 24724145 -93138482 + AT_rich Low_complexity Low_complexity 1 22 0 2567 142 14 34 chr9 24724213 24724650 -93137977 - MSTC LTR MaLR 0 428 1 242 333 21 0 chr9 24724996 24725089 -93137538 - L3b LINE CR1 -145 1438 1344 523 279 85 18 chr9 24725272 24725489 -93137138 + MIR SINE MIR 32 262 0 373 132 0 15 chr9 24725931 24725999 -93136628 - L1MA6 LINE L1 -347 5953 5887 592 122 158 14 chr9 24726000 24726086 -93136541 + L1MA8 LINE L1 6130 6202 -89 393 22 0 0 chr9 24726086 24726132 -93136495 + (TATG)n Simple_repeat Simple_repeat 3 48 0 592 122 158 14 chr9 24726132 24726184 -93136443 + L1MA8 LINE L1 6202 6288 -3 667 164 62 88 chr9 24727130 24727347 -93135280 + MLT1A1 LTR MaLR 1 193 -172 668 205 0 8 chr9 24727551 24727678 -93134949 + MLT1A1 LTR MaLR 235 360 -5 307 325 103 34 chr9 24727696 24727930 -93134697 + MIR SINE MIR 7 256 -6 256 301 6 49 chr9 24729269 24729452 -93133175 + GA-rich Low_complexity Low_complexity 4 178 0 207 260 130 50 chr9 24729993 24730093 -93132534 - L2 LINE L2 -21 3292 3185 339 305 143 35 chr9 24730547 24730750 -93131877 - L2 LINE L2 -629 2685 2461 302 297 8 16 chr9 24730918 24731046 -93131581 + (TGAA)n Simple_repeat Simple_repeat 1 127 0 1614 170 45 3 chr9 24731329 24731664 -93130963 + L1MA8 LINE L1 5936 6284 -7 9178 102 57 18 chr9 24733588 24735430 -93127197 - L1PBa LINE L1 -4162 2701 637 1284 140 0 0 chr9 24735433 24735633 -93126994 - L1PBa LINE L1 -6663 200 1 383 206 134 0 chr9 24735668 24735765 -93126862 - MER53 DNA DNA -1 188 79 4517 147 49 43 chr9 24735985 24737041 -93125586 + L1PA16 LINE L1 4625 5683 -483 2493 74 0 0 chr9 24737041 24737351 -93125276 + AluY SINE Alu 1 310 -1 4517 147 49 43 chr9 24737351 24737818 -93124809 + L1PA16 LINE L1 5683 6145 -21 1990 135 12 4 chr9 24737898 24738315 -93124312 + L1M2 LINE L1 5023 5443 -743 265 184 0 0 chr9 24738460 24738509 -93124118 - L1 LINE L1 -2130 4016 3968 2785 214 15 71 chr9 24738512 24738772 -93123855 - L1P LINE L1 -3604 2542 2269 1865 151 0 0 chr9 24738772 24739043 -93123584 - AluSx SINE Alu -37 275 5 2785 214 15 71 chr9 24739043 24739586 -93123041 - L1P LINE L1 -3877 2269 1784 2726 256 81 42 chr9 24739923 24740470 -93122157 + L1M3b LINE L1 2079 2603 -4962 2212 112 0 0 chr9 24740470 24740764 -93121863 + AluSg SINE Alu 1 294 -16 297 0 0 0 chr9 24740764 24740797 -93121830 + (CAAG)n Simple_repeat Simple_repeat 2 34 0 2726 256 81 42 chr9 24740797 24740942 -93121685 + L1M3b LINE L1 2603 2741 -4824 369 0 0 0 chr9 24740942 24740983 -93121644 + (CA)n Simple_repeat Simple_repeat 2 42 0 2726 256 81 42 chr9 24740983 24741120 -93121507 + L1M3b LINE L1 2741 2871 -4694 180 0 0 0 chr9 24741120 24741140 -93121487 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2726 256 81 42 chr9 24741140 24742153 -93120474 + L1M3b LINE L1 2871 3901 -3664 3276 252 40 34 chr9 24742257 24743418 -93119209 - L1M4 LINE L1 -1118 5028 3860 2036 280 71 40 chr9 24743524 24744642 -93117985 + L1MEc LINE L1 485 1566 -4830 2117 123 45 31 chr9 24744642 24745001 -93117626 - THE1B LTR MaLR 0 364 1 10376 108 27 25 chr9 24745001 24745696 -93116931 - THE1B-int LTR MaLR 0 1580 888 2331 93 0 13 chr9 24745696 24746009 -93116618 - AluSp SINE Alu -4 309 1 10376 108 27 25 chr9 24746009 24746889 -93115738 - THE1B-int LTR MaLR -692 888 1 1689 131 134 27 chr9 24746889 24747218 -93115409 - THE1B LTR MaLR 0 364 1 2036 280 71 40 chr9 24747218 24747433 -93115194 + L1MEc LINE L1 1565 1862 -4534 438 229 44 49 chr9 24747476 24747659 -93114968 + L1M4 LINE L1 55 236 -6306 1600 234 110 39 chr9 24748245 24748484 -93114143 + L1M4 LINE L1 869 1090 -5556 2797 23 0 0 chr9 24748484 24748794 -93113833 + AluYa5 SINE Alu 1 310 -1 1600 234 110 39 chr9 24748794 24749542 -93113085 + L1M4 LINE L1 1090 1922 -4724 385 268 60 33 chr9 24749561 24749744 -93112883 + L1M4 LINE L1 4727 4914 -1730 1095 224 32 35 chr9 24749845 24750080 -93112547 + L1M3b LINE L1 4874 5109 -2456 192 40 0 0 chr9 24750080 24750105 -93112522 + (CAA)n Simple_repeat Simple_repeat 2 26 0 1095 224 32 35 chr9 24750105 24750209 -93112418 + L1M3b LINE L1 5109 5212 -2353 327 230 60 20 chr9 24750213 24750313 -93112314 - L2 LINE L2 -97 3216 3113 1370 239 18 12 chr9 24753046 24753377 -93109250 - MLT1A1 LTR MaLR -28 337 5 1626 174 44 4 chr9 24753507 24753782 -93108845 + AluJb SINE Alu 1 286 -26 188 298 81 48 chr9 24754311 24754435 -93108192 + MIR3 SINE MIR 4 131 -77 355 177 48 0 chr9 24756152 24756214 -93106413 - L2 LINE L2 0 3313 3249 375 41 0 0 chr9 24758299 24758348 -93104279 + (CA)n Simple_repeat Simple_repeat 2 50 0 1597 189 4 0 chr9 24758473 24758748 -93103879 + AluJo SINE Alu 1 276 -36 240 35 0 0 chr9 24758792 24758821 -93103806 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 250 343 94 21 chr9 24758999 24759232 -93103395 + L2 LINE L2 2812 3061 -211 891 180 6 12 chr9 24760020 24760181 -93102446 + THE1C LTR MaLR 1 160 -215 1437 88 0 10 chr9 24760181 24760375 -93102252 - AluY SINE Alu 0 311 120 1022 154 15 31 chr9 24760376 24760571 -93102056 + THE1C LTR MaLR 182 373 -2 9951 133 11 32 chr9 24760573 24762187 -93100440 + THE1C-int LTR MaLR 1 1580 0 2011 145 24 19 chr9 24762187 24762560 -93100067 + THE1C LTR MaLR 1 375 0 21 82 0 0 chr9 24762701 24762750 -93099877 + AT_rich Low_complexity Low_complexity 1 49 0 22 88 0 0 chr9 24762874 24762931 -93099696 + AT_rich Low_complexity Low_complexity 1 57 0 2675 166 79 13 chr9 24763118 24763305 -93099322 + L1PB4 LINE L1 5584 5757 -399 342 0 0 0 chr9 24763305 24763343 -93099284 + (CA)n Simple_repeat Simple_repeat 2 39 0 2675 166 79 13 chr9 24763343 24763686 -93098941 + L1PB4 LINE L1 5757 6149 -7 5228 116 4 13 chr9 24763763 24764043 -93098584 + L1MA2 LINE L1 5487 5768 -536 2175 128 0 0 chr9 24764043 24764347 -93098280 + AluSx SINE Alu 1 304 -8 5228 116 4 13 chr9 24764347 24764887 -93097740 + L1MA2 LINE L1 5768 6299 -5 21 36 0 0 chr9 24764887 24764915 -93097712 + AT_rich Low_complexity Low_complexity 1 28 0 869 201 6 0 chr9 24764936 24765095 -93097532 - AluY SINE Alu -20 291 132 256 188 0 62 chr9 24765256 24765320 -93097307 - LTR33A LTR ERVL -43 480 421 24 0 0 0 chr9 24765622 24765646 -93096981 + AT_rich Low_complexity Low_complexity 1 24 0 1067 269 94 17 chr9 24765666 24766167 -93096460 + MLT1G LTR MaLR 9 590 0 7986 66 3 11 chr9 24767346 24768374 -93094253 - MER11C LTR ERVK 0 1071 52 365 85 0 0 chr9 24768372 24768419 -93094208 + MER11B LTR ERVK 21 67 -1169 * 208 280 20 0 chr9 24768521 24768571 -93094056 - L2 LINE L2 -19 3253 3203 2186 125 3 3 chr9 24768582 24768895 -93093732 + AluSp SINE Alu 1 313 0 885 259 62 0 chr9 24769119 24769393 -93093234 + L1ME2 LINE L1 5832 6122 -42 388 325 138 33 chr9 24769676 24770103 -93092524 + L1M4 LINE L1 4892 5363 -783 461 254 8 8 chr9 24770426 24770544 -93092083 + L1MD3 LINE L1 6661 6778 -1217 8509 220 51 34 chr9 24770545 24771983 -93090644 + L1MA9 LINE L1 2977 4390 -3175 2367 90 0 0 chr9 24771983 24772283 -93090344 + AluY SINE Alu 1 300 -11 8509 220 51 34 chr9 24772283 24773849 -93088778 + L1MA9 LINE L1 4390 6056 -1509 4337 69 0 0 chr9 24773846 24774426 -93088201 - L1PA4 LINE L1 -4542 1604 1025 * 30827 36 3 0 chr9 24774425 24778988 -93083639 + L1PA4 LINE L1 1579 6152 -3 4778 197 54 10 chr9 24778985 24780098 -93082529 + L1MA9 LINE L1 6044 7249 -482 * 315 71 0 0 chr9 24780098 24780140 -93082487 + (CA)n Simple_repeat Simple_repeat 2 43 0 4778 197 54 10 chr9 24780140 24780646 -93081981 + L1MA9 LINE L1 7249 7731 0 261 267 75 32 chr9 24780643 24780830 -93081797 + L1MC5 LINE L1 7507 7701 -260 * 273 146 0 0 chr9 24780904 24780952 -93081675 + (TA)n Simple_repeat Simple_repeat 1 48 0 377 319 43 17 chr9 24782560 24782676 -93079951 + L2 LINE L2 3151 3269 -3 319 333 19 26 chr9 24782996 24783152 -93079475 + L2 LINE L2 2599 2753 -561 257 429 0 47 chr9 24783277 24783447 -93079180 + L2 LINE L2 2918 3079 -193 408 342 95 14 chr9 24783468 24783690 -93078937 + MIR SINE MIR 5 244 -18 231 360 112 0 chr9 24783765 24783854 -93078773 + L2 LINE L2 3133 3231 -41 1138 256 57 30 chr9 24784694 24785083 -93077544 + L1MCc LINE L1 3 738 -5684 4721 236 76 23 chr9 24785235 24785483 -93077144 + L1MCc LINE L1 2774 3007 -3934 2542 46 7 0 chr9 24785483 24785789 -93076838 + AluY SINE Alu 1 308 -3 4721 236 76 23 chr9 24785789 24787440 -93075187 + L1MCc LINE L1 3007 4743 -2198 1528 197 128 163 chr9 24787460 24787935 -93074692 + MLT2B3 LTR ERVL 1 510 -44 234 0 0 0 chr9 24787935 24787961 -93074666 + (TG)n Simple_repeat Simple_repeat 2 27 0 1528 197 128 163 chr9 24787961 24788005 -93074622 + MLT2B3 LTR ERVL 510 554 0 515 286 0 19 chr9 24788014 24788168 -93074459 + L1MCc LINE L1 4763 4913 -2028 502 223 50 14 chr9 24788366 24788505 -93074122 + L1MCc LINE L1 4907 5050 -1891 * 6280 177 47 9 chr9 24788502 24789748 -93072879 + L1MC3 LINE L1 6493 7785 0 186 323 32 48 chr9 24790353 24790477 -93072150 + MIR SINE MIR 47 168 -94 362 215 21 0 chr9 24790485 24790578 -93072049 + (CATATA)n Simple_repeat Simple_repeat 1 95 0 232 175 0 0 chr9 24790684 24790724 -93071903 + L3 LINE CR1 1514 1553 -24 193 154 58 58 chr9 24790693 24790745 -93071882 + L3b LINE CR1 1529 1580 -3 * 315 325 18 26 chr9 24792224 24792338 -93070289 + MIR SINE MIR 22 134 -128 435 344 93 5 chr9 24792369 24792639 -93069988 + L2 LINE L2 2720 3017 -296 418 235 31 0 chr9 24792650 24792748 -93069879 + Tigger3b DNA MER2_type 2 102 -1129 236 75 75 0 chr9 24792754 24792794 -93069833 + Tigger3b DNA MER2_type 282 324 -907 303 28 0 0 chr9 24792796 24792832 -93069795 + (TG)n Simple_repeat Simple_repeat 2 37 0 323 105 18 0 chr9 24792832 24792889 -93069738 + (TA)n Simple_repeat Simple_repeat 2 59 0 4394 110 18 20 chr9 24792893 24793601 -93069026 + Tigger3b DNA MER2_type 340 1046 -185 1118 121 0 0 chr9 24793845 24794002 -93068625 + Tigger3b DNA MER2_type 1049 1205 -26 310 336 100 0 chr9 24794313 24794423 -93068204 + L2 LINE L2 3136 3256 -16 246 370 91 0 chr9 24796228 24796393 -93066234 + MIR SINE MIR 83 262 0 24 67 0 0 chr9 24796772 24796817 -93065810 + AT_rich Low_complexity Low_complexity 1 45 0 340 346 84 11 chr9 24797242 24797421 -93065206 - Charlie8 DNA MER1_type -2152 265 74 333 0 0 0 chr9 24797423 24797460 -93065167 + (A)n Simple_repeat Simple_repeat 1 37 0 2421 90 0 0 chr9 24799304 24799605 -93063022 - AluSg SINE Alu -9 301 1 2099 116 14 0 chr9 24799615 24799909 -93062718 - AluSc SINE Alu -11 298 1 185 421 83 0 chr9 24799914 24800047 -93062580 + L2 LINE L2 3089 3232 -40 1223 253 84 45 chr9 24800223 24800686 -93061941 - LTR33 LTR ERVL -1 520 40 1683 154 58 61 chr9 24801057 24801361 -93061266 + THE1C LTR MaLR 1 305 -70 2467 79 0 0 chr9 24801361 24801666 -93060961 + AluY SINE Alu 1 305 -6 1683 154 58 61 chr9 24801666 24801737 -93060890 + THE1C LTR MaLR 305 375 0 1694 139 0 0 chr9 24802070 24802337 -93060290 + L1MA4A LINE L1 6026 6292 -11 675 266 130 5 chr9 24802556 24802763 -93059864 - MIR SINE MIR -24 238 6 26 0 0 0 chr9 24803024 24803050 -93059577 + AT_rich Low_complexity Low_complexity 1 26 0 222 223 287 0 chr9 24803118 24803212 -93059415 + L2 LINE L2 1899 2019 -1295 3082 137 101 20 chr9 24803213 24803793 -93058834 - LTR49 LTR ERV1 0 595 1 886 331 67 59 chr9 24803795 24804361 -93058266 + L2 LINE L2 2067 2627 -686 1705 176 65 9 chr9 24804361 24804684 -93057943 + MER2 DNA MER2_type 2 342 -2 886 331 67 59 chr9 24804684 24805323 -93057304 + L2 LINE L2 2627 3284 -29 202 294 51 85 chr9 24805350 24805527 -93057100 - L2 LINE L2 -46 3267 3097 362 301 35 9 chr9 24805621 24805734 -93056893 - MIR SINE MIR -130 132 17 3446 166 2 2 chr9 24807531 24808122 -93054505 + L1MB2 LINE L1 5577 6167 -4 299 219 55 14 chr9 24808302 24808375 -93054252 - MIR SINE MIR -83 179 104 180 293 0 0 chr9 24808609 24808650 -93053977 - L2 LINE L2 -11 3302 3262 403 304 37 43 chr9 24808663 24808824 -93053803 - MIR SINE MIR -91 171 12 330 306 89 27 chr9 24811766 24812172 -93050455 - MLT1L LTR MaLR -2 613 142 2470 61 0 7 chr9 24813099 24813409 -93049218 + AluY SINE Alu 1 308 -3 2197 96 7 13 chr9 24814491 24814794 -93047833 - AluSx SINE Alu -11 301 1 269 226 95 29 chr9 24815580 24815717 -93046910 + L1ME LINE L1 5322 5467 -2341 254 217 0 0 chr9 24815802 24815848 -93046779 + L1ME LINE L1 5616 5661 -460 21 71 0 0 chr9 24815881 24815923 -93046704 + AT_rich Low_complexity Low_complexity 1 42 0 1821 162 10 0 chr9 24816441 24816749 -93045878 + AluJb SINE Alu 1 311 -1 502 194 48 48 chr9 24816772 24816896 -93045731 + Tigger3(Golem) DNA MER2_type 1 124 -2905 413 248 293 0 chr9 24817744 24817877 -93044750 + MER5A DNA MER1_type 12 183 -6 398 358 59 5 chr9 24817962 24818166 -93044461 + MIR SINE MIR 21 235 -27 2399 71 7 13 chr9 24818613 24818922 -93043705 - AluY SINE Alu -3 308 2 282 319 127 30 chr9 24819200 24819366 -93043261 + MIR SINE MIR 23 204 -58 229 273 11 0 chr9 24819547 24819635 -93042992 + (TA)n Simple_repeat Simple_repeat 2 90 0 229 337 81 6 chr9 24819754 24819926 -93042701 + L2 LINE L2 2369 2553 -761 863 233 78 0 chr9 24820284 24820490 -93042137 + MER58A DNA MER1_type 3 224 0 718 94 0 0 chr9 24820519 24820640 -93041987 + AluSp/q SINE Alu 188 308 0 1153 267 99 19 chr9 24820734 24821199 -93041428 + MLT1D LTR MaLR 1 502 -3 474 179 0 0 chr9 24821631 24821726 -93040901 + GA-rich Low_complexity Low_complexity 2 96 0 2142 99 7 0 chr9 24822263 24822545 -93040082 + AluSc SINE Alu 1 284 -25 876 267 104 59 chr9 24822937 24823658 -93038969 + L2 LINE L2 2531 3296 -17 443 314 103 5 chr9 24823806 24824000 -93038627 - L2 LINE L2 0 3313 3101 641 260 115 67 chr9 24824688 24825000 -93037627 + MLT1I LTR MaLR 81 407 -2 21 36 0 0 chr9 24825293 24825321 -93037306 + AT_rich Low_complexity Low_complexity 1 28 0 219 324 0 54 chr9 24827205 24827279 -93035348 - L2 LINE L2 -66 3206 3137 2473 155 8 37 chr9 24827353 24827837 -93034790 + L1MB7 LINE L1 5709 6178 -6 189 288 0 51 chr9 24828651 24828710 -93033917 + L2 LINE L2 3201 3256 -16 644 332 59 56 chr9 24828893 24829285 -93033342 + L2 LINE L2 2878 3270 -2 1548 207 3 7 chr9 24829947 24830237 -93032390 + AluSx SINE Alu 1 289 -23 1778 174 7 3 chr9 24830246 24830550 -93032077 + AluJo SINE Alu 1 305 -7 4348 135 41 36 chr9 24830825 24832206 -93030421 + pTR5 LTR ERV1 741 2438 0 1762 181 10 0 chr9 24832335 24832639 -93029988 + AluSx SINE Alu 4 310 -2 21 0 0 0 chr9 24833104 24833125 -93029502 + AT_rich Low_complexity Low_complexity 1 21 0 196 238 109 50 chr9 24833326 24833427 -93029200 + MIR SINE MIR 38 144 -64 392 254 8 25 chr9 24833816 24833938 -93028689 - MER103 DNA DNA -21 145 26 347 323 89 32 chr9 24834297 24834542 -93028085 + L1MB7 LINE L1 3996 4226 -1920 2048 123 28 0 chr9 24834542 24834826 -93027801 - AluSg SINE Alu -18 292 1 347 323 89 32 chr9 24834826 24835912 -93026715 + L1MB7 LINE L1 4226 5403 -743 1650 170 64 19 chr9 24835955 24836314 -93026313 - THE1C LTR MaLR 0 375 1 430 318 90 26 chr9 24836596 24836983 -93025644 + HAL1 LINE L1 1371 1782 -725 39 0 0 0 chr9 24837409 24837448 -93025179 + AT_rich Low_complexity Low_complexity 1 39 0 5580 247 59 35 chr9 24837799 24837989 -93024638 + L1MEc LINE L1 789 973 -5242 2266 108 0 6 chr9 24837989 24838304 -93024323 + AluSq SINE Alu 1 313 0 5580 247 59 35 chr9 24838304 24841011 -93021616 + L1MEc LINE L1 973 3686 -2529 1396 163 42 0 chr9 24841530 24841770 -93020857 - Tigger3(Golem) DNA MER2_type 0 3035 2786 6697 238 59 46 chr9 24842353 24844709 -93017918 + L1M4b LINE L1 19 2523 -4615 270 81 0 0 chr9 24844709 24844746 -93017881 + (CA)n Simple_repeat Simple_repeat 2 38 0 6697 238 59 46 chr9 24844746 24844950 -93017677 + L1M4b LINE L1 2523 2723 -4415 399 306 24 44 chr9 24844941 24845189 -93017438 + L1MEc LINE L1 1729 1971 -4425 * 5395 148 71 45 chr9 24845397 24846542 -93016085 - Ricksha_a DNA DNA -7 1174 1 6954 228 63 20 chr9 24846559 24848486 -93014141 + L1MEc LINE L1 2221 4440 -1775 2352 73 3 16 chr9 24848486 24848799 -93013828 + AluY SINE Alu 1 309 -2 6954 228 63 20 chr9 24848799 24849267 -93013360 + L1MEc LINE L1 4440 4886 -1329 3160 192 62 7 chr9 24849272 24849950 -93012677 + L1MB7 LINE L1 5470 6184 0 533 231 176 33 chr9 24853074 24853256 -93009371 - MIR SINE MIR -1 261 54 925 270 68 4 chr9 24853795 24854032 -93008595 + MIR SINE MIR 1 252 -10 182 88 0 29 chr9 24854039 24854073 -93008554 + (CAT)n Simple_repeat Simple_repeat 2 34 0 242 332 25 55 chr9 24854200 24854399 -93008228 + L2 LINE L2 2545 2737 -577 225 274 0 32 chr9 24854633 24854695 -93007932 - MIR SINE MIR -62 146 87 351 264 132 40 chr9 24854816 24854990 -93007637 - MIR SINE MIR 0 262 73 519 17 0 0 chr9 24855771 24855826 -93006801 + (TCCA)n Simple_repeat Simple_repeat 1 115 0 519 17 0 0 chr9 24855826 24855886 -93006741 + (TCCA)n Simple_repeat Simple_repeat 1 60 0 376 346 30 0 chr9 24856960 24857093 -93005534 - L2 LINE L2 -3 3269 3133 1851 79 4 20 chr9 24857286 24857539 -93005088 - AluSp SINE Alu 0 313 65 1504 230 55 93 chr9 24857931 24858173 -93004454 - MLT1E2 LTR MaLR -1 625 375 2556 51 0 13 chr9 24858173 24858488 -93004139 + AluY SINE Alu 1 311 0 1504 230 55 93 chr9 24858488 24858858 -93003769 - MLT1E2 LTR MaLR -251 375 59 278 299 62 7 chr9 24859019 24859163 -93003464 - L1ME4a LINE L1 -14 6107 5956 236 254 127 35 chr9 24859260 24859433 -93003194 - L1ME4a LINE L1 -306 5815 5627 973 270 96 12 chr9 24859653 24859997 -93002630 + MLT1I LTR MaLR 1 373 -36 1904 214 46 32 chr9 24860500 24860996 -93001631 - MLT1D LTR MaLR -2 503 1 371 263 114 18 chr9 24862248 24862362 -93000265 + MLT1I LTR MaLR 285 409 0 29 28 0 0 chr9 24862539 24862575 -93000052 + AT_rich Low_complexity Low_complexity 1 36 0 1483 153 12 117 chr9 24863216 24863550 -92999077 - AluJb SINE Alu -1 301 3 219 304 0 8 chr9 24863671 24863743 -92998884 + GA-rich Low_complexity Low_complexity 3 124 0 21 36 0 0 chr9 24864226 24864254 -92998373 + AT_rich Low_complexity Low_complexity 1 28 0 245 271 112 28 chr9 24864774 24864940 -92997687 + MIR SINE MIR 44 219 -43 462 223 214 0 chr9 24865262 24865374 -92997253 - MER5A DNA MER1_type 0 189 54 426 316 169 32 chr9 24866612 24866960 -92995667 - L2 LINE L2 -47 3266 2871 21 71 0 0 chr9 24867188 24867230 -92995397 + AT_rich Low_complexity Low_complexity 1 42 0 1975 117 70 9 chr9 24867253 24867595 -92995032 - L1PA13 LINE L1 -7 6156 5794 22 56 0 0 chr9 24868372 24868408 -92994219 + AT_rich Low_complexity Low_complexity 1 36 0 360 238 66 41 chr9 24869246 24869368 -92993259 - L2 LINE L2 -2 3311 3187 2054 100 0 10 chr9 24869369 24869705 -92992922 + AluSg SINE Alu 5 310 0 828 307 114 35 chr9 24869750 24870327 -92992300 - L2 LINE L2 -1 3312 2690 299 339 73 0 chr9 24870851 24870975 -92991652 + L2 LINE L2 3165 3297 -16 267 31 0 0 chr9 24872336 24872368 -92990259 + (CA)n Simple_repeat Simple_repeat 2 33 0 244 313 134 8 chr9 24872572 24872706 -92989921 - MIR SINE MIR -71 191 41 362 286 139 58 chr9 24872859 24873219 -92989408 + MLT1J LTR MaLR 99 487 -24 23 54 0 0 chr9 24873284 24873321 -92989306 + AT_rich Low_complexity Low_complexity 1 37 0 504 299 85 19 chr9 24874890 24875101 -92987526 + MIR SINE MIR 28 252 -10 186 217 43 0 chr9 24876934 24876980 -92985647 + L2 LINE L2 3266 3313 0 2065 187 98 0 chr9 24877006 24877412 -92985215 - MER74C LTR ERVL -2 458 13 2409 68 0 3 chr9 24877412 24877708 -92984919 - AluY SINE Alu -16 295 1 1966 157 50 66 chr9 24877858 24878297 -92984330 + MSTB1 LTR MaLR 1 432 0 22 0 0 0 chr9 24878325 24878347 -92984280 + AT_rich Low_complexity Low_complexity 1 22 0 990 250 71 60 chr9 24878602 24878966 -92983661 + MLT1D LTR MaLR 1 368 -137 259 330 45 18 chr9 24878988 24879100 -92983527 - MIR SINE MIR -113 149 35 631 183 102 7 chr9 24879286 24879423 -92983204 + MLT1D LTR MaLR 354 503 -2 27 49 0 0 chr9 24880721 24880762 -92981865 + AT_rich Low_complexity Low_complexity 1 41 0 3016 244 115 16 chr9 24881097 24881872 -92980755 - L1ME LINE L1 -395 5838 5141 210 37 0 0 chr9 24881872 24881899 -92980728 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 3016 244 115 16 chr9 24881899 24882000 -92980627 - L1ME LINE L1 -1092 5141 5051 2089 122 138 5 chr9 24882000 24882378 -92980249 - MSTA LTR MaLR 0 428 1 3016 244 115 16 chr9 24882378 24883380 -92979247 - L1ME LINE L1 -1182 5051 3772 713 110 45 0 chr9 24883529 24883683 -92978944 + (TA)n Simple_repeat Simple_repeat 2 162 0 318 202 11 64 chr9 24883683 24883777 -92978850 - L1MC4 LINE L1 -1338 6704 6616 478 157 41 0 chr9 24883777 24883898 -92978729 + (TA)n Simple_repeat Simple_repeat 1 126 0 393 75 0 0 chr9 24883935 24883988 -92978639 + (TA)n Simple_repeat Simple_repeat 1 53 0 2074 104 16 50 chr9 24883988 24884305 -92978322 - AluSc SINE Alu -3 306 1 232 240 73 60 chr9 24884357 24884507 -92978120 - L1ME LINE L1 -2759 3456 3305 434 261 13 25 chr9 24884507 24884664 -92977963 + MER105 DNA DNA 1 155 -49 649 246 17 90 chr9 24884713 24884877 -92977750 - L1ME LINE L1 -2913 3302 3128 490 230 88 18 chr9 24884877 24884990 -92977637 - FLAM_A SINE Alu -11 122 2 649 246 17 90 chr9 24884990 24885227 -92977400 - L1ME LINE L1 -3087 3128 2930 533 178 0 10 chr9 24885228 24885329 -92977298 + AluJo SINE Alu 119 218 -94 5099 163 36 29 chr9 24885458 24886377 -92976250 - L1MA9 LINE L1 0 6312 5401 2388 68 102 0 chr9 24886377 24886699 -92975928 + THE1A LTR MaLR 1 355 0 10979 100 19 3 chr9 24886699 24888253 -92974374 + THE1A-int LTR MaLR 1 1580 0 2704 85 3 0 chr9 24888253 24888607 -92974020 + THE1A LTR MaLR 1 355 0 5099 163 36 29 chr9 24888607 24889008 -92973619 - L1MA9 LINE L1 -910 5402 4973 266 282 13 0 chr9 24889049 24889127 -92973500 - L1ME LINE L1 -6211 185 107 188 306 10 15 chr9 24889341 24889408 -92973219 + L2 LINE L2 3188 3295 -18 366 339 54 63 chr9 24889502 24889523 -92973104 - MIR SINE MIR -6 256 236 620 250 111 43 chr9 24889523 24889564 -92973063 + MER58A DNA MER1_type 3 40 -2380 2249 70 0 23 chr9 24889564 24889897 -92972730 - AluY SINE Alu 0 311 1 620 250 111 43 chr9 24889897 24890063 -92972564 + MER58A DNA MER1_type 40 224 0 366 339 54 63 chr9 24890063 24890280 -92972347 - MIR SINE MIR -26 236 20 225 171 29 14 chr9 24890522 24890592 -92972035 + (TA)n Simple_repeat Simple_repeat 1 71 0 223 299 69 23 chr9 24892838 24892925 -92969702 + MIR SINE MIR 55 145 -63 201 313 0 0 chr9 24892982 24893030 -92969597 + L2 LINE L2 3251 3298 -15 223 356 144 28 chr9 24893146 24893326 -92969301 + L3 LINE CR1 1244 1444 -133 457 263 46 20 chr9 24893375 24893527 -92969100 + MIR SINE MIR 31 186 -76 201 221 265 0 chr9 24894197 24894265 -92968362 - L2 LINE L2 -1 3271 3186 689 281 16 103 chr9 24894288 24894676 -92967951 - L2 LINE L2 -68 3245 2892 241 292 37 35 chr9 24895288 24895434 -92967193 + MIR SINE MIR 32 174 -66 238 254 34 17 chr9 24897023 24897082 -92965545 - L2 LINE L2 -12 3260 3201 2405 119 5 22 chr9 24897454 24897823 -92964804 + THE1B LTR MaLR 1 363 -1 7493 68 3 8 chr9 24898225 24899999 -92962628 + L1PA6 LINE L1 4390 6154 0 770 247 111 14 chr9 24900155 24900533 -92962094 + L1ME3 LINE L1 5739 6160 -2 364 277 35 64 chr9 24901103 24901244 -92961383 + MIR SINE MIR 13 149 -113 789 216 25 0 chr9 24901345 24901507 -92961120 - MER97c DNA MER1_type? -911 179 14 2073 162 12 3 chr9 24902236 24902570 -92960057 + MER1B DNA MER1_type 1 337 0 222 37 0 0 chr9 24902710 24902737 -92959890 + (CAAAA)n Simple_repeat Simple_repeat 5 31 0 24 0 0 0 chr9 24903007 24903031 -92959596 + AT_rich Low_complexity Low_complexity 1 24 0 814 304 16 4 chr9 24903099 24903346 -92959281 + MIR SINE MIR 8 257 -5 379 353 53 35 chr9 24903647 24904024 -92958603 + L2 LINE L2 2360 2743 -571 270 287 0 43 chr9 24904404 24904498 -92958129 + L2 LINE L2 2994 3083 -189 502 301 38 16 chr9 24904818 24905001 -92957626 - MIR SINE MIR -74 188 2 424 305 85 37 chr9 24905166 24905330 -92957297 + L3b LINE CR1 1388 1559 -24 417 294 64 46 chr9 24906039 24906245 -92956382 - MIR SINE MIR -55 207 2 660 267 71 29 chr9 24906395 24906635 -92955992 - MIR SINE MIR -5 257 8 866 221 33 6 chr9 24906650 24906831 -92955796 + MER5A DNA MER1_type 4 189 0 22 0 0 0 chr9 24907860 24907882 -92954745 + AT_rich Low_complexity Low_complexity 1 22 0 341 262 30 83 chr9 24908047 24908215 -92954412 - MIR SINE MIR -5 257 99 1238 266 190 26 chr9 24908225 24908725 -92953902 + MLT1G1 LTR MaLR 13 594 -1 231 269 87 39 chr9 24908879 24908983 -92953644 - L2 LINE L2 -5 3267 3159 211 225 0 0 chr9 24909234 24909274 -92953353 + (CATATA)n Simple_repeat Simple_repeat 3 42 0 459 0 0 0 chr9 24909355 24909406 -92953221 + (CA)n Simple_repeat Simple_repeat 1 51 0 1460 197 25 11 chr9 24909484 24909601 -92953026 + AluJo SINE Alu 1 115 -190 234 0 0 0 chr9 24909601 24909627 -92953000 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 1460 197 25 11 chr9 24909627 24909810 -92952817 + AluJo SINE Alu 115 305 0 699 234 90 129 chr9 24909899 24910489 -92952138 + L1MDa LINE L1 75 641 -5899 2590 57 0 13 chr9 24910533 24910847 -92951780 - AluY SINE Alu -1 310 1 482 201 195 17 chr9 24911235 24911409 -92951218 + L1MDa LINE L1 1021 1225 -5318 2312 100 0 3 chr9 24911736 24912046 -92950581 - AluSg SINE Alu 0 310 2 1365 167 41 56 chr9 24912327 24912596 -92950031 + AluJb SINE Alu 1 265 -47 394 286 83 83 chr9 24913023 24913263 -92949364 - L2 LINE L2 -1 3271 3032 1013 191 11 21 chr9 24913263 24913452 -92949175 - MER5A DNA MER1_type -2 187 1 424 200 17 113 chr9 24913484 24913599 -92949028 + MER5A DNA MER1_type 9 112 -77 682 226 126 6 chr9 24913636 24913795 -92948832 - MER5B DNA MER1_type 0 178 1 450 261 82 23 chr9 24914930 24915082 -92947545 - MIR SINE MIR -65 143 7 1766 102 19 8 chr9 24915457 24915721 -92946906 + MER39 LTR ERV1 441 707 0 1482 104 59 0 chr9 24915770 24915972 -92946655 - AluSc SINE Alu -11 298 85 521 326 69 60 chr9 24916114 24916547 -92946080 + L2 LINE L2 2836 3272 0 966 245 102 3 chr9 24917012 24917326 -92945301 + L1MC4 LINE L1 7107 7451 -591 1659 214 123 12 chr9 24917326 24917747 -92944880 - MLT1F LTR MaLR 0 542 75 2360 175 8 56 chr9 24917750 24918230 -92944397 - LTR9 LTR ERV1 0 612 156 5412 194 56 31 chr9 24919949 24921220 -92941407 - L1 LINE L1 -1993 4153 2852 1442 182 30 61 chr9 24922128 24922425 -92940202 - AluJo SINE Alu -24 288 1 1042 287 42 12 chr9 24922779 24923183 -92939444 + L1MC1 LINE L1 5401 5816 -1992 556 263 6 29 chr9 24923869 24924044 -92938583 - MER5B DNA MER1_type -4 174 4 2516 160 18 61 chr9 24924356 24924801 -92937826 + MSTB LTR MaLR 1 426 0 379 150 150 18 chr9 24925408 24925521 -92937106 + Charlie4 DNA MER1_type 1740 1867 -94 1223 145 0 0 chr9 24925621 24925799 -92936828 + AluSg/x SINE Alu 120 300 -10 2102 150 9 0 chr9 24925799 24926125 -92936502 + L1MC1 LINE L1 6005 6333 0 28 48 0 0 chr9 24926340 24926382 -92936245 + AT_rich Low_complexity Low_complexity 1 42 0 213 298 137 16 chr9 24926419 24926543 -92936084 - L2 LINE L2 -225 3047 2909 1728 162 16 13 chr9 24927187 24927501 -92935126 - L1MA4 LINE L1 -7 6293 5979 889 183 140 0 chr9 24928106 24928335 -92934292 + L1MDb LINE L1 887 1147 -5262 268 351 45 9 chr9 24929015 24929126 -92933501 + MIR SINE MIR 35 149 -113 597 41 0 0 chr9 24930128 24930201 -92932426 + L1PA8 LINE L1 6095 6167 -5 218 323 40 50 chr9 24930370 24930469 -92932158 + MIR SINE MIR 20 117 -91 233 211 18 35 chr9 24930872 24930929 -92931698 + MIR SINE MIR 37 92 -170 472 244 43 37 chr9 24931378 24931542 -92931085 - MIR SINE MIR 0 262 98 1641 118 20 0 chr9 24931886 24932140 -92930487 - L1MA5 LINE L1 -4 6296 6038 472 230 43 50 chr9 24932162 24932301 -92930326 - MIR SINE MIR -27 235 98 292 310 0 0 chr9 24933127 24933198 -92929429 - L2 LINE L2 -22 3250 3180 257 339 98 11 chr9 24936190 24936364 -92926263 - MER117 DNA MER1_type -4 193 5 267 260 96 123 chr9 24936989 24937078 -92925549 - MIR SINE MIR -45 217 127 2210 92 0 0 chr9 24937078 24937387 -92925240 + AluY SINE Alu 1 309 0 267 260 96 123 chr9 24937387 24937514 -92925113 - MIR SINE MIR -135 127 5 22 0 0 0 chr9 24938488 24938510 -92924117 + AT_rich Low_complexity Low_complexity 1 22 0 334 323 16 16 chr9 24939446 24939570 -92923057 - MLT2E LTR ERVL -473 155 32 2271 108 7 0 chr9 24940316 24940623 -92922004 + AluSc SINE Alu 1 309 0 2543 74 0 0 chr9 24940682 24940991 -92921636 + AluY SINE Alu 1 309 -2 1659 129 80 4 chr9 24941260 24941524 -92921103 + AluSx SINE Alu 1 284 -28 555 304 151 31 chr9 24941977 24942404 -92920223 + L2 LINE L2 2743 3238 -75 1576 256 67 20 chr9 24942490 24942939 -92919688 - L2 LINE L2 -6 3307 2838 1361 179 4 73 chr9 24942950 24943223 -92919404 + AluJo SINE Alu 7 260 -52 697 111 0 63 chr9 24943255 24943445 -92919182 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 4773 40 0 0 chr9 24943461 24944039 -92918588 - L1PA4 LINE L1 -795 5351 4774 7116 34 5 0 chr9 24944039 24944837 -92917790 + L1PA4 LINE L1 5353 6155 0 368 306 50 54 chr9 24944877 24945099 -92917528 - L2 LINE L2 -368 2946 2726 291 290 56 9 chr9 24945473 24945580 -92917047 - MIR3 SINE MIR -2 206 95 313 283 69 56 chr9 24946719 24946952 -92915675 + MARNA DNA Mariner 334 569 -17 270 373 63 0 chr9 24947010 24947168 -92915459 + MIR SINE MIR 72 239 -23 251 357 0 19 chr9 24947975 24948099 -92914528 - MIR SINE MIR -67 141 21 540 291 114 17 chr9 24948503 24948740 -92913887 - MIR SINE MIR 0 262 3 224 252 134 39 chr9 24949881 24950008 -92912619 + MER5A DNA MER1_type 21 159 -30 557 252 22 0 chr9 24950160 24950295 -92912332 + MIR SINE MIR 69 206 -56 829 218 42 26 chr9 24950302 24950495 -92912132 + MER20 DNA MER1_type 1 196 -23 543 297 42 6 chr9 24950541 24950706 -92911921 + MIR SINE MIR 48 218 -44 188 227 67 40 chr9 24952370 24952445 -92910182 - MIR SINE MIR -76 186 110 256 191 0 0 chr9 24952530 24952577 -92910050 + L2 LINE L2 2710 2756 -558 884 192 6 34 chr9 24952594 24952771 -92909856 + MER5B DNA MER1_type 7 178 0 347 314 101 60 chr9 24952829 24953240 -92909387 + L2 LINE L2 2818 3249 -23 3223 126 20 39 chr9 24953240 24953782 -92908845 + L1MB4 LINE L1 5648 6179 -1 347 314 101 60 chr9 24953782 24953807 -92908820 + L2 LINE L2 3249 3272 0 * 494 321 77 18 chr9 24953806 24954120 -92908507 + L2 LINE L2 2753 3092 -221 299 235 0 15 chr9 24954133 24954201 -92908426 - MLT1J2 LTR MaLR 0 450 384 615 231 39 0 chr9 24954201 24954331 -92908296 - MER5A DNA MER1_type -8 181 47 1526 174 40 82 chr9 24954331 24954390 -92908237 + MLT1A1 LTR MaLR 1 61 -304 2490 137 28 14 chr9 24954390 24954749 -92907878 - THE1B LTR MaLR 0 364 1 1526 174 40 82 chr9 24954749 24955069 -92907558 + MLT1A1 LTR MaLR 61 364 -1 332 128 0 0 chr9 24955069 24955116 -92907511 - MER5A DNA MER1_type -137 52 6 990 269 97 38 chr9 24955116 24955488 -92907139 - MLT1J2 LTR MaLR -50 400 7 599 232 39 77 chr9 24955498 24955705 -92906922 + L2 LINE L2 3115 3313 0 475 376 41 5 chr9 24956670 24956888 -92905739 - MIR SINE MIR -6 256 31 287 333 44 0 chr9 24956918 24957008 -92905619 - L2 LINE L2 -1 3271 3178 231 274 48 0 chr9 24957084 24957146 -92905481 - L2 LINE L2 -219 3053 2989 417 229 16 16 chr9 24958140 24958262 -92904365 + MLT1J2 LTR MaLR 20 141 -309 212 371 100 10 chr9 24958788 24958859 -92903768 + L2 LINE L2 2767 2830 -442 878 53 76 30 chr9 24958859 24958990 -92903637 + MER85 DNA T2_type 1 137 -2 212 371 100 10 chr9 24958990 24959172 -92903455 + L2 LINE L2 2830 3035 -237 2243 112 7 0 chr9 24959223 24959526 -92903101 - AluSq SINE Alu -8 305 1 22 36 0 55 chr9 24960290 24960324 -92902303 + AT_rich Low_complexity Low_complexity 1 32 -20 2249 99 0 0 chr9 24960324 24960608 -92902019 - AluSg SINE Alu -26 284 1 22 36 0 55 chr9 24960608 24960628 -92901999 + AT_rich Low_complexity Low_complexity 32 52 0 575 263 74 21 chr9 24960781 24960971 -92901656 + MIR SINE MIR 53 252 -10 347 223 32 21 chr9 24962691 24962785 -92899842 - MIR SINE MIR -105 157 63 377 336 146 0 chr9 24963178 24963404 -92899223 + MIR SINE MIR 4 262 0 510 283 7 21 chr9 24964125 24964270 -92898357 + MIR SINE MIR 49 191 -71 21 0 0 0 chr9 24964334 24964355 -92898272 + AT_rich Low_complexity Low_complexity 1 21 0 685 291 37 8 chr9 24965354 24965595 -92897032 + MIR SINE MIR 4 251 -11 213 256 135 60 chr9 24966975 24967108 -92895519 + L2 LINE L2 2937 3079 -193 244 217 65 33 chr9 24967244 24967693 -92894934 + MER88 LTR ERVL 79 173 -291 1238 252 78 38 chr9 24967256 24967304 -92895323 - MER74B LTR ERVL -74 548 503 2130 123 42 25 chr9 24967304 24967662 -92894965 + THE1B LTR MaLR 1 364 0 1238 252 78 38 chr9 24967662 24968090 -92894537 - MER74B LTR ERVL -119 503 53 374 259 48 95 chr9 24968288 24968477 -92894150 - MIR SINE MIR -75 187 8 257 295 0 0 chr9 24968512 24968573 -92894054 + L2 LINE L2 3211 3271 -1 1698 164 0 0 chr9 24968710 24968972 -92893655 + AluJo SINE Alu 18 279 -33 1909 139 128 8 chr9 24968974 24969342 -92893285 - MSTA LTR MaLR -16 412 1 565 293 27 59 chr9 24969403 24969514 -92893113 - MIR SINE MIR -3 259 146 459 0 0 0 chr9 24969514 24969565 -92893062 + (TA)n Simple_repeat Simple_repeat 1 51 0 565 293 27 59 chr9 24969565 24969709 -92892918 - MIR SINE MIR -116 146 12 274 244 47 23 chr9 24971658 24971744 -92890883 + MIR3 SINE MIR 110 197 -11 23 0 0 0 chr9 24972317 24972340 -92890287 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr9 24973007 24973032 -92889595 + AT_rich Low_complexity Low_complexity 1 25 0 2031 99 0 41 chr9 24973097 24973391 -92889236 + AluSc SINE Alu 1 282 -27 200 161 0 0 chr9 24974020 24974051 -92888576 + MIR SINE MIR 33 63 -145 316 242 112 56 chr9 24974967 24975182 -92887445 - L1ME4a LINE L1 -1 6120 5894 267 275 18 28 chr9 24975797 24975906 -92886721 - MLT1J LTR MaLR -4 507 400 361 244 39 38 chr9 24976056 24976234 -92886393 - MLT1L LTR MaLR -331 180 1 22 0 0 0 chr9 24976589 24976611 -92886016 + AT_rich Low_complexity Low_complexity 1 22 0 655 316 43 64 chr9 24976668 24977013 -92885614 - L3 LINE CR1 -103 1474 1137 358 323 165 28 chr9 24977129 24977414 -92885213 - L3 LINE CR1 -776 801 478 191 341 47 0 chr9 24977580 24977665 -92884962 - MIR SINE MIR -13 249 161 2042 229 142 34 chr9 24977799 24977845 -92884782 - MER21B LTR ERV1 -124 739 699 2520 193 80 62 chr9 24977845 24978554 -92884073 + MER72 LTR ERV1 1 722 0 2042 229 142 34 chr9 24978554 24979163 -92883464 - MER21B LTR ERV1 -164 699 13 182 313 21 0 chr9 24979175 24979223 -92883404 - MIR SINE MIR -114 94 46 2317 98 0 31 chr9 24979921 24980239 -92882388 + AluSq SINE Alu 1 308 -5 251 263 109 29 chr9 24980276 24980413 -92882214 - MIR SINE MIR -12 250 103 252 247 12 49 chr9 24980532 24980613 -92882014 + GA-rich Low_complexity Low_complexity 5 82 0 219 261 61 61 chr9 24980759 24980874 -92881753 - L2 LINE L2 -2 3311 3197 268 331 93 26 chr9 24982051 24982202 -92880425 - L2 LINE L2 -5 3267 3107 737 247 35 11 chr9 24982492 24982666 -92879961 + MIR SINE MIR 72 249 -13 269 250 46 56 chr9 24983895 24984003 -92878624 - MIR SINE MIR -34 228 122 226 348 152 5 chr9 24984520 24984704 -92877923 - MIR SINE MIR -40 222 12 1374 156 43 112 chr9 24984796 24985188 -92877439 + MLT1A1 LTR MaLR 1 365 0 360 0 0 0 chr9 24985225 24985265 -92877362 + (TA)n Simple_repeat Simple_repeat 1 40 0 200 361 175 40 chr9 24985538 24986393 -92876234 - L2 LINE L2 -516 2798 1814 180 0 0 0 chr9 24986393 24986413 -92876214 + (GA)n Simple_repeat Simple_repeat 2 21 0 200 361 175 40 chr9 24986413 24986458 -92876169 - L2 LINE L2 -1500 1814 1776 310 264 92 60 chr9 24987103 24987353 -92875274 + HAL1 LINE L1 2245 2502 -5 855 185 62 120 chr9 24988952 24989320 -92873307 + MLT1A1 LTR MaLR 19 365 0 192 303 204 0 chr9 24989436 24989568 -92873059 - MIR SINE MIR -4 258 100 483 279 71 49 chr9 24989656 24989882 -92872745 + MIR SINE MIR 18 248 -14 21 0 0 0 chr9 24990243 24990264 -92872363 + AT_rich Low_complexity Low_complexity 1 21 0 2088 164 71 23 chr9 24990862 24991338 -92871289 - L1MC2 LINE L1 -9 6335 5837 266 223 36 161 chr9 24991608 24991720 -92870907 - L2 LINE L2 -6 3266 3169 237 65 0 0 chr9 24992902 24992933 -92869694 + (CA)n Simple_repeat Simple_repeat 2 32 0 225 211 0 0 chr9 24993664 24993721 -92868906 + (TAG)n Simple_repeat Simple_repeat 3 59 0 240 346 29 19 chr9 24993815 24993919 -92868708 - MIR SINE MIR -67 141 37 259 293 71 29 chr9 24994182 24994322 -92868305 - MIR SINE MIR -5 257 112 780 266 155 13 chr9 24994346 24994662 -92867965 - L2 LINE L2 0 3313 2953 264 398 49 0 chr9 24994664 24994787 -92867840 - L2 LINE L2 -17 3255 3127 344 205 0 13 chr9 24994864 24994942 -92867685 + MER96B DNA MER1_type? 159 235 -182 230 221 26 26 chr9 24995229 24995306 -92867321 + MER103 DNA DNA 8 84 -82 255 244 0 0 chr9 24995490 24995568 -92867059 - L1MC4 LINE L1 -1340 6702 6625 479 271 106 35 chr9 24995574 24995744 -92866883 - MIR SINE MIR -73 189 8 446 289 176 5 chr9 24997187 24997374 -92865253 + MIR SINE MIR 44 262 0 690 286 75 0 chr9 24998676 24998889 -92863738 + MIR SINE MIR 31 259 -3 667 241 18 6 chr9 24999141 24999307 -92863320 - MLT1D LTR MaLR 0 505 338 678 251 67 0 chr9 24999316 24999511 -92863116 - MER3 DNA MER1_type -1 208 1 2336 118 0 3 chr9 24999953 25000266 -92862361 - AluSx SINE Alu 0 312 1 2214 149 0 3 chr9 25000652 25001001 -92861626 + MER7A DNA MER2_type 1 346 0 551 193 226 6 chr9 25001211 25001392 -92861235 - MIR SINE MIR 0 262 42 323 301 11 0 chr9 25001633 25001726 -92860901 + MIR SINE MIR 67 160 -102 1965 175 131 0 chr9 25001751 25002164 -92860463 + MLT2B2 LTR ERVL 1 357 -40 203 161 0 0 chr9 25002164 25002195 -92860432 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 318 266 83 28 chr9 25002825 25002934 -92859693 - MLT1A1 LTR MaLR -72 302 188 309 68 0 0 chr9 25002947 25002991 -92859636 + (CA)n Simple_repeat Simple_repeat 2 45 0 354 61 0 0 chr9 25002992 25003041 -92859586 + (GA)n Simple_repeat Simple_repeat 1 49 0 705 170 50 7 chr9 25003066 25003207 -92859420 - MLT1A1 LTR MaLR -218 147 1 220 309 59 52 chr9 25003443 25003579 -92859048 + L2 LINE L2 2849 2985 -328 349 130 0 0 chr9 25003707 25003761 -92858866 - L2 LINE L2 -35 3278 3225 404 269 94 25 chr9 25004861 25005021 -92857606 - MLT1J2 LTR MaLR 0 450 280 486 321 61 6 chr9 25005407 25005572 -92857055 + MIR SINE MIR 18 191 -71 1443 211 44 6 chr9 25005583 25005943 -92856684 - MER89 LTR ERV1 -10 549 176 207 0 0 0 chr9 25006748 25006771 -92855856 + (TG)n Simple_repeat Simple_repeat 2 24 0 191 249 118 124 chr9 25006852 25007021 -92855606 + L3 LINE CR1 1052 1219 -358 1948 198 56 90 chr9 25007898 25007940 -92854687 - MLT2B1 LTR ERVL 0 520 478 309 26 0 0 chr9 25007940 25007978 -92854649 + (TG)n Simple_repeat Simple_repeat 2 39 0 1948 198 56 90 chr9 25007978 25008471 -92854156 - MLT2B1 LTR ERVL -42 478 3 450 281 54 60 chr9 25008844 25009011 -92853616 + MIR SINE MIR 2 167 -95 2204 253 21 32 chr9 25010119 25010192 -92852435 + L1ME1 LINE L1 5398 5470 -696 252 0 0 0 chr9 25010192 25010220 -92852407 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 2204 253 21 32 chr9 25010220 25010325 -92852302 + L1ME1 LINE L1 5470 5575 -591 1936 142 0 28 chr9 25010325 25010638 -92851989 + AluSx SINE Alu 2 306 0 2204 253 21 32 chr9 25010638 25011117 -92851510 + L1ME1 LINE L1 5575 6050 -116 493 135 34 11 chr9 25011111 25011200 -92851427 + L1ME LINE L1 5695 5785 -377 * 303 281 44 0 chr9 25011208 25011322 -92851305 + L1MA10 LINE L1 6190 6308 -26 246 192 0 0 chr9 25011389 25011441 -92851186 + (TA)n Simple_repeat Simple_repeat 2 53 0 785 263 153 46 chr9 25011534 25011907 -92850720 + MLT1K LTR MaLR 151 563 -25 531 250 107 0 chr9 25012172 25012340 -92850287 + MIR SINE MIR 73 258 -4 1469 210 45 79 chr9 25012583 25012970 -92849657 - MER63B DNA MER1_type -635 427 55 1885 145 7 3 chr9 25012970 25013259 -92849368 - AluSx SINE Alu -22 290 1 1469 210 45 79 chr9 25013259 25013313 -92849314 - MER63B DNA MER1_type -1007 55 1 552 310 42 64 chr9 25013694 25014007 -92848620 + L3 LINE CR1 1164 1469 -108 297 326 69 87 chr9 25014276 25014665 -92847962 - L2 LINE L2 0 3272 2891 584 250 132 45 chr9 25014912 25015132 -92847495 + L2 LINE L2 2836 3074 -239 520 335 59 28 chr9 25015405 25015727 -92846900 + L3 LINE CR1 1146 1477 -100 632 275 42 10 chr9 25015774 25015967 -92846660 - MIR SINE MIR -3 259 61 236 275 22 22 chr9 25016217 25016308 -92846319 + L2 LINE L2 3161 3251 -62 896 280 67 84 chr9 25017949 25018413 -92844214 - LTR16C LTR ERVL 0 491 36 346 248 50 35 chr9 25019354 25019495 -92843132 + Charlie8 DNA MER1_type 369 511 -1906 24 91 0 0 chr9 25019556 25019622 -92843005 + AT_rich Low_complexity Low_complexity 1 66 0 26 30 0 0 chr9 25019751 25019784 -92842843 + AT_rich Low_complexity Low_complexity 1 33 0 209 56 0 83 chr9 25020970 25021006 -92841621 + L3 LINE CR1 1523 1555 -22 288 331 36 36 chr9 25021221 25021387 -92841240 + L3b LINE CR1 1157 1322 -261 7347 63 7 0 chr9 25022329 25023443 -92839184 + L1PA7 LINE L1 5016 6136 -18 450 0 0 0 chr9 25023444 25023494 -92839133 + (TA)n Simple_repeat Simple_repeat 1 50 0 249 233 139 58 chr9 25024122 25024208 -92838419 - L2 LINE L2 0 3272 3180 348 24 0 0 chr9 25024695 25024736 -92837891 + (CA)n Simple_repeat Simple_repeat 1 41 0 270 0 0 0 chr9 25024768 25024798 -92837829 + (CA)n Simple_repeat Simple_repeat 2 31 0 612 256 103 10 chr9 25025692 25025895 -92836732 - Charlie8 DNA MER1_type -2153 264 43 365 232 0 0 chr9 25026684 25026753 -92835874 - L2 LINE L2 0 3313 3245 310 244 16 94 chr9 25027060 25027187 -92835440 + MIR SINE MIR 103 219 -43 726 184 24 8 chr9 25027447 25027572 -92835055 - FLAM_A SINE Alu -6 127 1 22 0 0 0 chr9 25028941 25028963 -92833664 + AT_rich Low_complexity Low_complexity 1 22 0 498 263 40 73 chr9 25029515 25029789 -92832838 + L2 LINE L2 3048 3312 -1 225 0 0 0 chr9 25029957 25029982 -92832645 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 458 292 107 6 chr9 25032028 25032206 -92830421 - MIR SINE MIR -31 231 36 754 234 152 32 chr9 25032394 25032897 -92829730 - LTR50 LTR ERVL -19 776 1 288 211 40 26 chr9 25033421 25033478 -92829149 + AluJ/FRAM SINE Alu 224 284 -18 288 0 0 0 chr9 25033478 25033510 -92829117 + (CCAA)n Simple_repeat Simple_repeat 1 32 0 288 211 40 26 chr9 25033510 25033528 -92829099 + AluJ/FRAM SINE Alu 284 300 -2 331 345 63 5 chr9 25033911 25034117 -92828510 + L2 LINE L2 2685 2902 -412 213 254 48 0 chr9 25034444 25034507 -92828120 + L2 LINE L2 3202 3267 -5 1725 159 0 41 chr9 25034982 25035320 -92827307 + AluSx SINE Alu 1 326 0 725 258 123 19 chr9 25036195 25036505 -92826122 + MLT1J2 LTR MaLR 85 426 -24 180 0 0 0 chr9 25036744 25036764 -92825863 + (TA)n Simple_repeat Simple_repeat 2 21 0 307 333 90 19 chr9 25036831 25036987 -92825640 - MIR SINE MIR -94 168 2 1203 195 45 7 chr9 25038553 25038840 -92823787 - MER33 DNA MER1_type 0 324 27 364 123 35 0 chr9 25039691 25039748 -92822879 + MER41D LTR ERV1 499 557 0 2363 150 60 29 chr9 25039748 25040078 -92822549 - L1MA9 LINE L1 -164 6148 5830 351 0 0 0 chr9 25040078 25040117 -92822510 + (TG)n Simple_repeat Simple_repeat 2 40 0 290 96 0 19 chr9 25040118 25040170 -92822457 + (TA)n Simple_repeat Simple_repeat 1 51 0 2363 150 60 29 chr9 25040170 25040289 -92822338 - L1MA9 LINE L1 -481 5831 5683 690 259 48 41 chr9 25042377 25042647 -92819980 + L1ME3A LINE L1 5842 6113 -57 355 293 101 25 chr9 25043214 25043412 -92819215 + MIR SINE MIR 36 248 -14 1189 137 71 0 chr9 25043434 25043554 -92819073 + AluJo SINE Alu 1 140 -172 195 42 0 0 chr9 25043554 25043578 -92819049 + (TAA)n Simple_repeat Simple_repeat 2 25 0 1189 137 71 0 chr9 25043578 25043640 -92818987 + AluJo SINE Alu 140 196 -116 773 181 201 44 chr9 25044633 25044692 -92817935 - L1MC4a LINE L1 -1849 5959 5911 1857 164 3 28 chr9 25044692 25045010 -92817617 - AluSx SINE Alu -2 310 1 773 181 201 44 chr9 25045010 25045199 -92817428 - L1MC4a LINE L1 -1897 5911 5672 2523 80 0 0 chr9 25045213 25045515 -92817112 - AluY SINE Alu -8 303 2 1198 230 72 43 chr9 25045667 25045812 -92816815 - LTR2 LTR ERV1 -84 365 226 186 43 0 0 chr9 25045812 25045835 -92816792 + (CAGAA)n Simple_repeat Simple_repeat 1 23 0 1198 230 72 43 chr9 25045835 25046037 -92816590 - LTR2 LTR ERV1 -223 226 8 1091 156 0 0 chr9 25046037 25046197 -92816430 - AluSx SINE Alu -118 194 35 481 271 251 53 chr9 25046197 25046496 -92816131 + MLT1F1 LTR MaLR 124 506 -61 3705 84 18 6 chr9 25046501 25047011 -92815616 + MER4E LTR ERV1 1 516 -250 4378 149 12 26 chr9 25047461 25048201 -92814426 + L1MB3 LINE L1 5452 6181 -2 2039 208 26 38 chr9 25048655 25048914 -92813713 + L1MC3 LINE L1 6609 6861 -924 1956 117 3 69 chr9 25048914 25049247 -92813380 + AluSx SINE Alu 1 311 -1 2039 208 26 38 chr9 25049247 25049482 -92813145 + L1MC3 LINE L1 6861 7097 -688 245 328 43 0 chr9 25049482 25049598 -92813029 + MLT1F1 LTR MaLR 35 155 -412 2032 161 18 29 chr9 25049599 25049943 -92812684 + L1MC3 LINE L1 7240 7581 -204 2258 113 3 0 chr9 25049943 25050245 -92812382 + AluSx SINE Alu 1 303 -9 2032 161 18 29 chr9 25050245 25050284 -92812343 + L1MC3 LINE L1 7581 7619 -166 266 212 106 44 chr9 25050934 25051047 -92811580 - L2 LINE L2 -1 3312 3193 2080 134 0 0 chr9 25051280 25051571 -92811056 + AluSx SINE Alu 1 291 -21 495 123 0 203 chr9 25051587 25051725 -92810902 + L1MB3 LINE L1 5677 5786 -385 258 176 0 0 chr9 25051732 25051783 -92810844 + (TA)n Simple_repeat Simple_repeat 1 51 0 254 130 43 0 chr9 25051786 25051832 -92810795 - L1M2 LINE L1 -507 5793 5746 202 150 25 0 chr9 25051842 25051882 -92810745 + (TA)n Simple_repeat Simple_repeat 1 41 0 1315 147 4 37 chr9 25051883 25052128 -92810499 + L1MB3 LINE L1 5776 6012 -171 323 318 47 27 chr9 25052274 25052422 -92810205 + L1MEc LINE L1 2024 2174 -4222 297 164 0 41 chr9 25052428 25052501 -92810126 + L1MC3 LINE L1 7716 7785 0 * 1828 237 83 8 chr9 25052495 25053105 -92809522 + L1MEc LINE L1 2170 2776 -3439 994 219 4 82 chr9 25053110 25053343 -92809284 - MER58C DNA MER1_type 0 215 1 1396 225 66 12 chr9 25053356 25053778 -92808849 + L1MEc LINE L1 3325 3769 -2446 7493 93 5 0 chr9 25053892 25054875 -92807752 - HERVK14 LTR ERVK -4957 988 1 3804 103 16 51 chr9 25054875 25055488 -92807139 - LTR14B LTR ERVK 0 608 17 436 275 23 88 chr9 25055509 25055771 -92806856 - MER21B LTR ERV1 -611 252 8 492 225 108 25 chr9 25056130 25056250 -92806377 - MSTC LTR MaLR -298 130 1 1119 220 112 1 chr9 25058313 25058661 -92803966 - MLT1F1 LTR MaLR -147 395 1 599 331 37 37 chr9 25060672 25061022 -92801605 + MLT1I LTR MaLR 58 407 -2 22 70 0 0 chr9 25061360 25061403 -92801224 + AT_rich Low_complexity Low_complexity 1 43 0 724 121 24 116 chr9 25061414 25061621 -92801006 - L1MA7 LINE L1 0 6291 6104 494 269 58 36 chr9 25062014 25062342 -92800285 + MLT1H LTR MaLR 77 440 -115 694 261 6 0 chr9 25062929 25063094 -92799533 + MLT1J1 LTR MaLR 2 167 -279 277 299 0 23 chr9 25063844 25063931 -92798696 + MIR SINE MIR 61 145 -117 491 257 59 0 chr9 25063948 25064084 -92798543 - MER5A DNA MER1_type 0 189 46 1534 184 16 87 chr9 25064088 25064137 -92798490 - MLT2D LTR ERVL -9 405 354 324 48 0 0 chr9 25064137 25064179 -92798448 + (TG)n Simple_repeat Simple_repeat 2 43 0 1534 184 16 87 chr9 25064179 25064565 -92798062 - MLT2D LTR ERVL -60 354 1 511 107 27 0 chr9 25064715 25064790 -92797837 - AluSq SINE Alu -18 295 219 990 63 0 120 chr9 25064793 25064951 -92797676 - AluSq SINE Alu -174 139 1 414 0 0 0 chr9 25067040 25067086 -92795541 + (CA)n Simple_repeat Simple_repeat 2 47 0 1478 218 86 45 chr9 25067086 25067542 -92795085 + MLT1D LTR MaLR 28 505 0 1376 149 20 64 chr9 25068616 25068673 -92793954 + AluJo SINE Alu 60 118 -194 2268 45 0 45 chr9 25068673 25068965 -92793662 - AluY SINE Alu -23 288 10 1376 149 20 64 chr9 25068965 25069156 -92793471 + AluJo SINE Alu 118 297 -15 676 254 127 19 chr9 25069237 25069505 -92793122 + MLT1J2 LTR MaLR 1 297 -153 4408 182 73 13 chr9 25070738 25072283 -92790344 - L1MC2 LINE L1 0 6344 4721 248 71 89 89 chr9 25072625 25072681 -92789946 + MLT1I LTR MaLR 342 397 -12 758 237 66 9 chr9 25073457 25073668 -92788959 + MER58A DNA MER1_type 2 224 0 381 176 56 120 chr9 25073846 25073988 -92788639 + L1ME3A LINE L1 6027 6159 -11 1136 187 28 5 chr9 25074312 25074526 -92788101 + MER20 DNA MER1_type 1 219 0 286 252 63 36 chr9 25074531 25074659 -92787968 + MER5A DNA MER1_type 2 120 -58 554 294 86 69 chr9 25075041 25075520 -92787107 - L2 LINE L2 -14 3299 2813 191 289 22 44 chr9 25075546 25075636 -92786991 + MIR SINE MIR 2 89 -173 2182 112 0 20 chr9 25075638 25075943 -92786684 + AluSx SINE Alu 1 299 -13 461 162 55 60 chr9 25076009 25076191 -92786436 + MER58 DNA MER1_type 28 2412 -8 1667 144 42 0 chr9 25078567 25078851 -92783776 - MER58B DNA MER1_type 0 341 46 1442 221 42 63 chr9 25079277 25079423 -92783204 + MLT2B1 LTR ERVL 1 149 -371 1307 193 216 34 chr9 25079423 25079863 -92782764 - MLT2B1 LTR ERVL 0 520 1 1442 221 42 63 chr9 25079863 25080195 -92782432 + MLT2B1 LTR ERVL 149 469 -51 235 192 0 0 chr9 25080229 25080281 -92782346 + MLT2B1 LTR ERVL 462 513 -7 460 255 173 41 chr9 25080328 25080669 -92781958 + L2 LINE L2 2928 3313 0 252 0 0 0 chr9 25082957 25082985 -92779642 + (A)n Simple_repeat Simple_repeat 1 28 0 263 276 67 9 chr9 25082985 25083090 -92779537 + MER103 DNA DNA 1 111 -55 828 158 0 66 chr9 25084412 25084564 -92778063 + FRAM SINE Alu 4 145 -31 198 0 0 0 chr9 25084564 25084586 -92778041 + (T)n Simple_repeat Simple_repeat 1 22 0 558 339 41 9 chr9 25085108 25085329 -92777298 - MIR SINE MIR -1 261 34 259 355 37 71 chr9 25086030 25086382 -92776245 + L2 LINE L2 2812 3151 -121 1242 180 28 0 chr9 25087977 25088194 -92774433 + MER58A DNA MER1_type 2 224 0 842 97 0 8 chr9 25089028 25089152 -92773475 + MER107 DNA MER1_type 1 123 -74 306 36 0 55 chr9 25089300 25089355 -92773272 + (CAAAA)n Simple_repeat Simple_repeat 2 53 0 1372 97 57 48 chr9 25089383 25089611 -92773016 + MER30 DNA MER1_type 1 230 0 379 236 47 39 chr9 25089847 25089974 -92772653 + MIR SINE MIR 119 246 -16 405 335 88 21 chr9 25091563 25091802 -92770825 - MIR SINE MIR -6 256 2 264 285 15 66 chr9 25093330 25093467 -92769160 + MIR3 SINE MIR 1 130 -78 206 294 193 46 chr9 25093655 25093764 -92768863 + MIR SINE MIR 22 146 -116 1510 211 65 34 chr9 25095071 25095403 -92767224 + MSTD LTR MaLR 1 348 -48 3258 107 62 2 chr9 25095403 25095900 -92766727 + L1PA10 LINE L1 5642 6168 0 1510 211 65 34 chr9 25095900 25095951 -92766676 + MSTD LTR MaLR 348 396 0 356 213 86 72 chr9 25096051 25096172 -92766455 + MER5A DNA MER1_type 52 189 0 347 309 115 18 chr9 25096186 25096351 -92766276 - MER5A DNA MER1_type -6 183 3 306 107 0 0 chr9 25097627 25097683 -92764944 + (CA)n Simple_repeat Simple_repeat 2 57 0 208 119 48 0 chr9 25097963 25098005 -92764622 + A-rich Low_complexity Low_complexity 2 45 0 448 336 111 10 chr9 25098405 25098613 -92764014 + MIR SINE MIR 2 230 -32 346 261 96 21 chr9 25098782 25098933 -92763694 + MER5A DNA MER1_type 8 187 -2 239 194 69 28 chr9 25100209 25100281 -92762346 + MIR SINE MIR 132 206 -56 1909 103 46 28 chr9 25102866 25102976 -92759651 + AluSg SINE Alu 11 118 -192 213 65 0 0 chr9 25102976 25103007 -92759620 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1909 103 46 28 chr9 25103007 25103178 -92759449 + AluSg SINE Alu 118 297 -13 282 278 119 26 chr9 25103739 25103890 -92758737 + MIR3 SINE MIR 20 184 -24 216 0 0 0 chr9 25105155 25105179 -92757448 + (A)n Simple_repeat Simple_repeat 1 24 0 180 0 0 0 chr9 25107426 25107446 -92755181 + (A)n Simple_repeat Simple_repeat 1 20 0 21 71 0 0 chr9 25108837 25108879 -92753748 + AT_rich Low_complexity Low_complexity 1 42 0 27 49 0 0 chr9 25109050 25109091 -92753536 + AT_rich Low_complexity Low_complexity 1 41 0 304 330 55 0 chr9 25112310 25112401 -92750226 - MIR SINE MIR -139 123 28 239 320 0 48 chr9 25112447 25112550 -92750077 - MIR3 SINE MIR -6 202 105 230 125 21 0 chr9 25113278 25113326 -92749301 + (TG)n Simple_repeat Simple_repeat 1 49 0 1480 132 24 4 chr9 25113936 25114187 -92748440 - Tigger3(Golem) DNA MER2_type -3 3026 2771 538 165 134 16 chr9 25114184 25114311 -92748316 - Tigger3(Golem) DNA MER2_type -2887 142 1 * 2350 78 3 10 chr9 25114898 25115205 -92747422 - AluY SINE Alu -6 305 1 54 40 0 0 chr9 25115338 25115413 -92747214 + AT_rich Low_complexity Low_complexity 1 75 0 285 265 85 45 chr9 25115592 25115815 -92746812 + Charlie7 DNA MER1_type 358 589 -2023 360 0 0 0 chr9 25118248 25118288 -92744339 + (T)n Simple_repeat Simple_repeat 1 40 0 717 213 91 25 chr9 25118963 25119160 -92743467 + MER58C DNA MER1_type 2 211 -4 959 213 38 5 chr9 25119382 25119593 -92743034 - MER20 DNA MER1_type -1 218 1 21 0 0 0 chr9 25120712 25120733 -92741894 + AT_rich Low_complexity Low_complexity 1 21 0 270 0 0 0 chr9 25121387 25121417 -92741210 + (A)n Simple_repeat Simple_repeat 1 30 0 528 238 41 8 chr9 25121483 25121605 -92741022 - MER5A DNA MER1_type -63 126 1 2129 119 3 22 chr9 25122356 25122667 -92739960 - AluSp SINE Alu -8 305 1 1646 158 134 3 chr9 25123998 25124296 -92738331 - MER1B DNA MER1_type 0 337 1 415 306 46 9 chr9 25124709 25124817 -92737810 + L2 LINE L2 3156 3267 -5 517 282 78 13 chr9 25126702 25126928 -92735699 - MIR SINE MIR -19 243 3 2143 93 17 0 chr9 25127083 25127373 -92735254 - AluSx SINE Alu -17 295 1 376 324 56 21 chr9 25130536 25130678 -92731949 - MIR3 SINE MIR -17 191 45 312 344 123 7 chr9 25132295 25132449 -92730178 + MIR SINE MIR 19 190 -72 380 286 98 0 chr9 25132551 25132663 -92729964 - MIR SINE MIR -8 254 132 2166 64 46 4 chr9 25133602 25133883 -92728744 - AluY SINE Alu -18 293 1 2014 34 0 0 chr9 25134513 25134750 -92727877 + L1PA5 LINE L1 5905 6141 -13 261 313 62 42 chr9 25136160 25136304 -92726323 + L2 LINE L2 3118 3264 -8 22 0 0 0 chr9 25138232 25138254 -92724373 + AT_rich Low_complexity Low_complexity 1 22 0 2196 112 0 7 chr9 25138259 25138562 -92724065 - AluSq SINE Alu -12 301 1 1833 136 31 21 chr9 25138615 25138902 -92723725 - AluSg SINE Alu -20 290 1 276 305 45 51 chr9 25139235 25139412 -92723215 + MER5A DNA MER1_type 1 176 -13 2048 128 111 20 chr9 25140054 25140452 -92722175 + Tigger2a DNA MER2_type 1 434 0 316 22 0 0 chr9 25141512 25141558 -92721069 - L1P LINE L1 -849 5306 5261 3733 35 15 4 chr9 25141558 25142015 -92720612 + L1PA3 LINE L1 5693 6155 0 271 317 55 33 chr9 25145982 25146165 -92716462 + MER5A DNA MER1_type 3 189 0 454 257 95 14 chr9 25148431 25148579 -92714048 + MER117 DNA MER1_type 1 160 -37 1191 235 50 0 chr9 25148841 25149143 -92713484 + MER58B DNA MER1_type 10 326 -15 380 220 45 98 chr9 25151145 25151277 -92711350 + MIR SINE MIR 53 177 -85 255 170 38 19 chr9 25151562 25151615 -92711012 - MER5B DNA MER1_type 0 178 125 189 213 0 0 chr9 25151678 25151725 -92710902 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 360 243 0 0 chr9 25151725 25151799 -92710828 - FLAM SINE Alu -17 116 43 258 227 80 34 chr9 25151799 25151887 -92710740 - MER5B DNA MER1_type -86 92 1 211 295 72 78 chr9 25152746 25152939 -92709688 - MIR SINE MIR -58 204 13 198 0 0 0 chr9 25153541 25153563 -92709064 + (A)n Simple_repeat Simple_repeat 1 22 0 1897 145 0 14 chr9 25153717 25154014 -92708613 - AluSx SINE Alu -19 293 1 25 51 0 0 chr9 25154458 25154497 -92708130 + AT_rich Low_complexity Low_complexity 1 39 0 345 308 164 21 chr9 25154767 25155053 -92707574 - L2 LINE L2 -34 3279 2953 282 284 93 76 chr9 25155347 25155583 -92707044 + L2 LINE L2 2937 3176 -96 421 239 71 49 chr9 25158700 25158884 -92703743 - MIR SINE MIR -57 205 18 1162 273 77 14 chr9 25159945 25160389 -92702238 + LTR38 LTR ERV1 85 556 0 189 283 43 0 chr9 25162795 25162841 -92699786 - L3b LINE CR1 -165 1418 1371 186 71 0 0 chr9 25163187 25163215 -92699412 + (TAAAAA)n Simple_repeat Simple_repeat 2 29 0 1593 191 24 14 chr9 25163363 25163657 -92698970 + AluJo SINE Alu 1 297 -15 387 131 47 131 chr9 25165497 25165604 -92697023 - Tigger7 DNA MER2_type 0 2487 2390 1098 190 59 16 chr9 25165608 25165861 -92696766 - Tigger7 DNA MER2_type -2221 266 3 22 0 0 0 chr9 25166345 25166367 -92696260 + AT_rich Low_complexity Low_complexity 1 22 0 1481 144 29 18 chr9 25167320 25167597 -92695030 + L1MB4 LINE L1 5900 6179 -1 2105 116 38 0 chr9 25170898 25171190 -92691437 - AluSx SINE Alu -9 303 1 513 245 18 89 chr9 25172832 25172881 -92689746 + MER34 LTR ERV1 1 52 -490 1910 155 0 31 chr9 25172881 25173198 -92689429 - AluSx SINE Alu -5 307 1 513 245 18 89 chr9 25173198 25173430 -92689197 + MER34 LTR ERV1 52 262 -280 22 0 0 0 chr9 25174653 25174675 -92687952 + AT_rich Low_complexity Low_complexity 1 22 0 337 261 43 26 chr9 25175299 25175414 -92687213 - MER5A DNA MER1_type -65 124 8 413 327 30 74 chr9 25175775 25175977 -92686650 + MIR3 SINE MIR 8 200 -8 288 297 76 14 chr9 25177163 25177308 -92685319 + MER103 DNA DNA 2 155 -11 3508 175 42 9 chr9 25177384 25178123 -92684504 + L1MA6 LINE L1 5529 6291 -9 403 91 27 45 chr9 25178123 25178233 -92684394 + (TA)n Simple_repeat Simple_repeat 1 108 0 217 235 224 12 chr9 25179438 25179523 -92683104 - MIR SINE MIR -62 146 44 21 36 0 0 chr9 25183816 25183844 -92678783 + AT_rich Low_complexity Low_complexity 1 28 0 1887 122 32 4 chr9 25185934 25186213 -92676414 + AluSx SINE Alu 1 287 -25 196 53 53 0 chr9 25187624 25187662 -92674965 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 188 281 122 76 chr9 25188474 25188777 -92673850 - L2 LINE L2 0 3313 2997 1665 199 66 49 chr9 25188785 25189273 -92673354 + MLT1D LTR MaLR 1 496 -9 640 264 254 0 chr9 25189286 25189652 -92672975 - L2 LINE L2 -323 2990 2526 198 91 0 0 chr9 25189852 25189885 -92672742 + (TA)n Simple_repeat Simple_repeat 1 33 0 207 0 0 0 chr9 25190970 25190993 -92671634 + (A)n Simple_repeat Simple_repeat 1 23 0 2323 86 0 10 chr9 25192365 25192678 -92669949 + AluY SINE Alu 1 310 -1 298 174 0 0 chr9 25193710 25193756 -92668871 + Alu SINE Alu 4 49 -253 309 151 0 0 chr9 25193761 25193814 -92668813 + Alu SINE Alu 239 291 -11 183 222 253 20 chr9 25193823 25193922 -92668705 - MIR SINE MIR -93 169 48 290 250 31 21 chr9 25194952 25195048 -92667579 - L2 LINE L2 -16 3256 3160 207 0 0 0 chr9 25195175 25195198 -92667429 + (A)n Simple_repeat Simple_repeat 1 23 0 486 0 0 0 chr9 25198415 25198469 -92664158 + (A)n Simple_repeat Simple_repeat 1 54 0 1926 146 19 29 chr9 25199939 25200116 -92662511 - AluJb SINE Alu 0 312 138 2200 73 30 13 chr9 25200116 25200418 -92662209 - AluY SINE Alu -4 307 1 1926 146 19 29 chr9 25200418 25200555 -92662072 - AluJb SINE Alu -174 138 1 1251 116 8 139 chr9 25200766 25201033 -92661594 + AluSg/x SINE Alu 78 309 -1 231 315 99 77 chr9 25202336 25202347 -92660280 - L2 LINE L2 -40 3232 3223 2331 62 0 16 chr9 25202347 25202651 -92659976 + AluY SINE Alu 1 299 -12 231 315 99 77 chr9 25202651 25202861 -92659766 - L2 LINE L2 -49 3223 3006 260 315 142 16 chr9 25203067 25203194 -92659433 - MIR3 SINE MIR -32 176 34 201 195 0 0 chr9 25205216 25205257 -92657370 + A-rich Low_complexity Low_complexity 1 41 0 249 279 115 96 chr9 25205609 25205697 -92656930 - MIR SINE MIR -31 231 146 1971 97 104 0 chr9 25205697 25205966 -92656661 - AluSq SINE Alu -16 297 1 249 279 115 96 chr9 25205966 25206085 -92656542 - MIR SINE MIR -116 146 20 462 248 18 0 chr9 25206127 25206236 -92656391 + MER5B DNA MER1_type 68 178 0 225 329 12 0 chr9 25206740 25206822 -92655805 + MIR SINE MIR 113 195 -67 1996 181 110 27 chr9 25206848 25207443 -92655184 - Tigger7 DNA MER2_type -34 2553 1 271 230 149 0 chr9 25209831 25209905 -92652722 + MLT1B LTR MaLR 7 91 -299 330 118 0 0 chr9 25209921 25209972 -92652655 + MER47A DNA MER2_type 73 123 -243 1217 185 38 58 chr9 25210004 25210328 -92652299 + MLT1B LTR MaLR 83 390 0 1950 150 22 27 chr9 25210416 25210783 -92651844 + MER47A DNA MER2_type 1 365 -1 1534 195 0 25 chr9 25211195 25211513 -92651114 - AluJo SINE Alu -2 310 1 2132 116 3 7 chr9 25213700 25214003 -92648624 + AluSx SINE Alu 5 306 -6 182 247 82 55 chr9 25215462 25215535 -92647092 + MIR SINE MIR 69 143 -119 2292 110 3 3 chr9 25216083 25216393 -92646234 + AluSp SINE Alu 4 313 0 790 183 52 70 chr9 25216765 25216978 -92645649 + MIR SINE MIR 30 238 -24 259 227 165 10 chr9 25217781 25217878 -92644749 - MIR SINE MIR -61 147 36 228 372 61 7 chr9 25220730 25220878 -92641749 - MIR3 SINE MIR -17 191 36 926 199 206 27 chr9 25221041 25221474 -92641153 + Charlie1b DNA MER1_type 1 523 0 675 99 0 0 chr9 25222592 25222714 -92639913 - AluSg/x SINE Alu 0 316 195 318 283 184 9 chr9 25222934 25223146 -92639481 - L1MC/D LINE L1 -2024 5784 5536 184 311 67 83 chr9 25223179 25223372 -92639255 + MIR3 SINE MIR 9 198 -10 1380 200 0 8 chr9 25224788 25225038 -92637589 + AluJo SINE Alu 1 248 -64 372 344 63 11 chr9 25226675 25226864 -92635763 + L2 LINE L2 3114 3312 -1 182 57 0 86 chr9 25228212 25228247 -92634380 - L3 LINE CR1 -813 764 733 31 0 0 0 chr9 25228833 25228864 -92633763 + AT_rich Low_complexity Low_complexity 1 31 0 341 198 170 19 chr9 25229098 25229204 -92633423 + MIR SINE MIR 20 141 -67 261 0 0 0 chr9 25234752 25234781 -92627846 + (A)n Simple_repeat Simple_repeat 1 29 0 1826 192 66 6 chr9 25235007 25235372 -92627255 + MER47B DNA MER2_type 1 387 -31 468 153 0 12 chr9 25236744 25236829 -92625798 - MER45A DNA AcHobo 0 178 95 186 43 0 0 chr9 25240131 25240154 -92622473 + (CGG)n Simple_repeat Simple_repeat 2 24 0 207 0 0 0 chr9 25240191 25240214 -92622413 + (CCGCG)n Simple_repeat Simple_repeat 1 23 0 27 0 0 0 chr9 25240345 25240372 -92622255 + GC_rich Low_complexity Low_complexity 1 27 0 212 86 29 0 chr9 25243641 25243676 -92618951 + (CCCCAG)n Simple_repeat Simple_repeat 4 39 0 216 0 0 0 chr9 25249036 25249060 -92613567 + (CA)n Simple_repeat Simple_repeat 2 25 0 280 255 11 21 chr9 25249713 25249807 -92612820 + CT-rich Low_complexity Low_complexity 2 94 0 23 0 0 0 chr9 25251941 25251964 -92610663 + AT_rich Low_complexity Low_complexity 1 23 0 521 319 105 4 chr9 25252773 25253011 -92609616 + MIR SINE MIR 1 262 0 237 139 0 0 chr9 25255081 25255124 -92607503 + (TG)n Simple_repeat Simple_repeat 1 43 0 183 394 19 0 chr9 25255183 25255287 -92607340 - L2 LINE L2 -427 2887 2782 246 333 20 20 chr9 25255740 25255842 -92606785 + MIR3 SINE MIR 4 105 -103 746 253 160 0 chr9 25255888 25256082 -92606545 - MIR SINE MIR -27 235 11 314 253 72 0 chr9 25256473 25256556 -92606071 + L1ME4a LINE L1 5788 5876 -245 357 254 42 49 chr9 25256574 25256716 -92605911 + L1ME4a LINE L1 5978 6118 -3 674 271 108 5 chr9 25258470 25258684 -92603943 + MIR SINE MIR 15 250 -12 388 324 28 45 chr9 25258707 25258883 -92603744 - MER5B DNA MER1_type 0 178 6 302 370 82 7 chr9 25262650 25262796 -92599831 + L2 LINE L2 3111 3267 -5 283 290 184 68 chr9 25265351 25265558 -92597069 + MIR SINE MIR 30 260 -2 24 0 0 0 chr9 25266303 25266327 -92596300 + AT_rich Low_complexity Low_complexity 1 24 0 204 111 0 0 chr9 25268654 25268690 -92593937 + (CCA)n Simple_repeat Simple_repeat 2 37 0 594 82 0 0 chr9 25269157 25269242 -92593385 + (TC)n Simple_repeat Simple_repeat 1 85 0 204 40 0 0 chr9 25269276 25269301 -92593326 + (CA)n Simple_repeat Simple_repeat 1 25 0 2182 88 7 10 chr9 25270883 25271179 -92591448 - AluY SINE Alu -16 295 1 24 77 0 0 chr9 25271398 25271450 -92591177 + AT_rich Low_complexity Low_complexity 1 52 0 256 305 113 13 chr9 25272880 25273031 -92589596 + MIR SINE MIR 63 228 -34 521 267 37 130 chr9 25273142 25273211 -92589416 + MLT1J LTR MaLR 108 182 -329 2030 141 0 3 chr9 25273211 25273508 -92589119 + AluSx SINE Alu 1 296 -16 521 267 37 130 chr9 25273508 25273846 -92588781 + MLT1J LTR MaLR 182 477 -34 685 244 0 32 chr9 25274329 25274485 -92588142 - FRAM SINE Alu -19 157 7 556 314 44 13 chr9 25275067 25275293 -92587334 + MIR SINE MIR 29 261 -1 258 254 45 15 chr9 25275845 25275912 -92586715 + MIR3 SINE MIR 89 157 -51 931 182 223 20 chr9 25276305 25276552 -92586075 - AluJb SINE Alu -5 297 1 851 187 43 32 chr9 25276610 25276797 -92585830 + MER5A DNA MER1_type 1 189 0 1089 253 35 55 chr9 25276819 25277203 -92585424 + MLT1H LTR MaLR 54 505 -44 217 300 0 0 chr9 25277546 25277596 -92585031 - MIR SINE MIR -127 81 32 2404 74 0 0 chr9 25277854 25278153 -92584474 + AluY SINE Alu 1 299 -12 31544 110 11 55 chr9 25279043 25285485 -92577142 - L1PA7 LINE L1 0 6154 12 1628 216 89 45 chr9 25285670 25286142 -92576485 - MLT1D LTR MaLR -12 493 1 262 200 47 47 chr9 25286885 25286970 -92575657 - HAL1b LINE L1 -1 1347 1263 991 230 121 32 chr9 25287023 25287462 -92575165 - HAL1b LINE L1 -262 1086 609 246 317 19 19 chr9 25287598 25287702 -92574925 - HAL1b LINE L1 -849 499 396 12716 186 37 14 chr9 25288102 25292332 -92570295 + L1PB2 LINE L1 2539 6867 0 512 212 89 22 chr9 25292466 25292645 -92569982 - L1MB8 LINE L1 -41 6137 5947 275 173 0 0 chr9 25292651 25292703 -92569924 + L1M4 LINE L1 5676 5727 -447 395 326 92 20 chr9 25292923 25292985 -92569642 + MIR SINE MIR 3 59 -203 1800 150 76 20 chr9 25292985 25293339 -92569288 + THE1C LTR MaLR 1 374 -1 395 326 92 20 chr9 25293339 25293472 -92569155 + MIR SINE MIR 59 212 -50 4089 179 35 17 chr9 25293520 25294357 -92568270 - L1MB2 LINE L1 -2 6169 5318 5672 168 68 18 chr9 25294373 25296283 -92566344 - L1PB2 LINE L1 -3 6148 4141 536 247 21 37 chr9 25296288 25296478 -92566149 - L1MB2 LINE L1 -816 5330 5144 546 278 111 61 chr9 25296592 25297016 -92565611 - L1MB8 LINE L1 -2047 5761 5317 26 0 0 0 chr9 25297030 25297056 -92565571 + AT_rich Low_complexity Low_complexity 1 26 0 245 104 0 0 chr9 25297562 25297610 -92565017 - L1MA9 LINE L1 -11 6301 6254 7084 151 7 32 chr9 25297649 25300035 -92562592 - L1MA5A LINE L1 -10 6287 3961 2303 144 8 3 chr9 25300053 25300415 -92562212 - THE1B LTR MaLR 0 364 1 10419 103 32 35 chr9 25300415 25301999 -92560628 - THE1B-int LTR MaLR 0 1580 1 521 96 0 14 chr9 25301999 25302072 -92560555 - THE1B LTR MaLR 0 375 304 1522 266 19 24 chr9 25302091 25302661 -92559966 - L1M1 LINE L1 -4501 1881 1228 2467 217 26 2 chr9 25302661 25303158 -92559469 + MLT2B1 LTR ERVL 12 520 0 256 236 37 60 chr9 25303159 25303291 -92559336 - L1M4c LINE L1 -3980 2754 2627 1650 185 3 23 chr9 25303291 25303593 -92559034 - AluJo SINE Alu -16 296 1 256 236 37 60 chr9 25303593 25303676 -92558951 - L1M4c LINE L1 -4107 2627 2544 811 236 23 110 chr9 25303706 25303852 -92558775 + AluJo SINE Alu 1 107 -205 278 26 26 0 chr9 25303852 25303891 -92558736 + (TA)n Simple_repeat Simple_repeat 2 41 0 811 236 23 110 chr9 25303891 25304053 -92558574 + AluJo SINE Alu 107 282 -30 1914 156 0 0 chr9 25304071 25304353 -92558274 + AluSx SINE Alu 1 282 -30 204 97 0 0 chr9 25304369 25304400 -92558227 + (TA)n Simple_repeat Simple_repeat 2 32 0 2977 273 34 34 chr9 25304450 25305676 -92556951 - L1M4c LINE L1 -4289 2443 1531 2165 180 36 10 chr9 25305676 25306093 -92556534 - MSTA LTR MaLR 0 428 1 2977 273 34 34 chr9 25306093 25307034 -92555593 - L1M4c LINE L1 -5201 1531 591 180 0 0 0 chr9 25307034 25307054 -92555573 + (TC)n Simple_repeat Simple_repeat 1 20 0 390 288 77 38 chr9 25307116 25307676 -92554951 - L1M4 LINE L1 -1432 4714 4133 781 315 55 41 chr9 25307689 25308032 -92554595 + L2 LINE L2 2963 3310 -3 22 35 0 0 chr9 25308218 25308247 -92554380 + AT_rich Low_complexity Low_complexity 1 29 0 808 305 53 40 chr9 25308410 25308784 -92553843 - L1ME3A LINE L1 -14 6156 5778 1763 166 3 3 chr9 25309266 25309556 -92553071 - AluSx SINE Alu -22 290 1 24 32 0 0 chr9 25310352 25310383 -92552244 + AT_rich Low_complexity Low_complexity 1 31 0 1414 160 19 0 chr9 25310409 25310677 -92551950 - L1MA4 LINE L1 -5 6295 6023 2034 115 19 16 chr9 25310684 25310996 -92551631 - AluSq SINE Alu 0 313 1 37 52 0 0 chr9 25311109 25311167 -92551460 + AT_rich Low_complexity Low_complexity 1 58 0 658 120 0 0 chr9 25311390 25311490 -92551137 - AluY SINE Alu -1 310 211 237 308 93 0 chr9 25311558 25311665 -92550962 + HAL1 LINE L1 23 139 -2368 7441 44 3 0 chr9 25312327 25314030 -92548597 - L1PA4 LINE L1 -4 6151 4445 471 298 48 43 chr9 25314137 25314345 -92548282 + MIR SINE MIR 52 260 -2 22 0 0 0 chr9 25314998 25315020 -92547607 + AT_rich Low_complexity Low_complexity 1 22 0 266 226 71 0 chr9 25316202 25316286 -92546341 - L1MC5 LINE L1 -36 7925 7836 2104 82 36 20 chr9 25316509 25316812 -92545815 + AluY SINE Alu 3 310 -1 1775 174 86 8 chr9 25316813 25317175 -92545452 - MER57A LTR ERV1 -13 390 1 2789 200 24 9 chr9 25317175 25317804 -92544823 + LTR48B LTR ERV1 7 644 0 1088 213 79 18 chr9 25317840 25318168 -92544459 - L1ME3A LINE L1 -168 6002 5655 47 82 0 0 chr9 25318754 25318864 -92543763 + AT_rich Low_complexity Low_complexity 1 110 0 290 317 19 19 chr9 25319114 25319218 -92543409 + MIR SINE MIR 47 150 -112 733 171 181 40 chr9 25319306 25319505 -92543122 - AluJo SINE Alu -3 309 83 423 282 28 80 chr9 25319657 25319870 -92542757 - MIR SINE MIR 0 262 61 25 0 0 0 chr9 25320143 25320168 -92542459 + AT_rich Low_complexity Low_complexity 1 25 0 421 211 202 0 chr9 25320645 25320754 -92541873 + FLAM_A SINE Alu 1 131 -2 2300 187 30 82 chr9 25321043 25321620 -92541007 + MLT2B3 LTR ERVL 8 554 0 254 240 194 23 chr9 25322626 25322755 -92539872 + MER5A DNA MER1_type 35 185 -4 1329 182 64 8 chr9 25322947 25323268 -92539359 + MLT2C2 LTR ERVL 3 332 -65 270 175 0 32 chr9 25323266 25323329 -92539298 - AluSp SINE Alu -170 133 73 * 646 94 31 10 chr9 25323332 25323428 -92539199 - AluJo SINE Alu -210 102 5 876 228 64 20 chr9 25324233 25324483 -92538144 + MIR SINE MIR 2 262 0 610 34 91 23 chr9 25325684 25325772 -92536855 - L1PA8 LINE L1 -5 6167 6074 388 39 0 0 chr9 25325881 25325932 -92536695 + MADE1 DNA Mariner 1 51 -29 619 296 27 17 chr9 25326433 25326734 -92535893 - L1M4 LINE L1 -2499 3647 3344 5299 45 9 0 chr9 25326849 25327534 -92535093 - L1PA4 LINE L1 -1412 4734 4044 * 6848 39 7 0 chr9 25327532 25328939 -92533688 + L1PA4 LINE L1 4708 6120 -35 3982 68 9 0 chr9 25330520 25331048 -92531579 + L1PA5 LINE L1 5607 6139 -15 994 195 0 0 chr9 25331176 25331345 -92531282 + FAM SINE Alu 1 169 -6 311 247 52 10 chr9 25331406 25331503 -92531124 + MER101B LTR ERV1 1 101 -469 1022 241 3 68 chr9 25331697 25332008 -92530619 + LTR51 LTR ERV1 222 512 -159 273 119 48 0 chr9 25332270 25332312 -92530315 + MER21B LTR ERV1 53 96 -767 909 285 14 109 chr9 25332448 25333228 -92529399 + L1ME LINE L1 6 711 -5359 838 218 76 30 chr9 25333245 25333354 -92529273 + L1ME LINE L1 2102 2205 -3875 1856 164 0 37 chr9 25333354 25333678 -92528949 + AluJb SINE Alu 1 312 0 838 218 76 30 chr9 25333678 25334003 -92528624 + L1ME LINE L1 2205 2556 -3524 4081 106 117 97 chr9 25334003 25335500 -92527127 - pTR5 LTR ERV1 -9 2429 63 1444 246 102 3 chr9 25335504 25336070 -92526557 + L1ME LINE L1 4182 4803 -1277 688 255 60 23 chr9 25336118 25336334 -92526293 - MER58A DNA MER1_type 0 224 1 1366 163 130 4 chr9 25336400 25336677 -92525950 - MER2 DNA MER2_type -31 314 3 4677 96 140 6 chr9 25336802 25337530 -92525097 - LTR12 LTR ERV1 0 826 1 58963 86 3 7 chr9 25337530 25345912 -92516715 - HERV9 LTR ERV1 0 8399 55 4906 68 9 194 chr9 25345940 25346953 -92515674 - LTR12 LTR ERV1 0 826 1 971 239 59 33 chr9 25347488 25348030 -92514597 + L1ME LINE L1 4802 5366 -738 1961 176 0 3 chr9 25348030 25348331 -92514296 - AluSx SINE Alu -11 301 2 971 239 59 33 chr9 25348331 25348380 -92514247 + L1ME LINE L1 5366 5412 -692 32 0 0 0 chr9 25348393 25348425 -92514202 + AT_rich Low_complexity Low_complexity 1 32 0 2394 136 0 19 chr9 25348571 25348990 -92513637 - L1MA3 LINE L1 0 6305 5895 695 95 0 0 chr9 25349042 25349147 -92513480 + L1MA3 LINE L1 5770 5874 -431 366 290 95 18 chr9 25350281 25350450 -92512177 + L1ME LINE L1 5292 5473 -2335 548 184 6 78 chr9 25350510 25350689 -92511938 + L1MC4 LINE L1 7869 8034 -8 320 272 160 24 chr9 25350808 25350916 -92511711 + L1ME LINE L1 5499 5591 -530 276 39 39 20 chr9 25350916 25350967 -92511660 + (CATTT)n Simple_repeat Simple_repeat 4 55 0 320 272 160 24 chr9 25350967 25351145 -92511482 + L1ME LINE L1 5591 5824 -297 21 0 0 0 chr9 25351343 25351364 -92511263 + AT_rich Low_complexity Low_complexity 1 21 0 1922 94 11 34 chr9 25351365 25351631 -92510996 - AluSx SINE Alu -17 295 36 23 0 0 0 chr9 25351798 25351821 -92510806 + AT_rich Low_complexity Low_complexity 1 23 0 325 252 9 35 chr9 25352755 25352870 -92509757 - MER94 DNA DNA 0 134 23 649 157 27 68 chr9 25353001 25353148 -92509479 - FRAM SINE Alu -23 153 13 642 188 131 74 chr9 25353302 25353478 -92509149 - AluJb SINE Alu -38 274 89 26 64 0 0 chr9 25354178 25354225 -92508402 + AT_rich Low_complexity Low_complexity 1 47 0 36 23 0 0 chr9 25355852 25355895 -92506732 + AT_rich Low_complexity Low_complexity 1 43 0 11069 27 0 0 chr9 25356502 25357888 -92504739 - L1P LINE L1 -1999 4147 2762 3780 16 9 0 chr9 25358302 25358743 -92503884 + L1PA2 LINE L1 5711 6155 0 235 345 0 24 chr9 25360407 25360491 -92502136 - L3 LINE CR1 -37 1540 1459 1971 161 40 13 chr9 25361488 25361860 -92500767 - MER61D LTR ERV1 -6 495 114 6856 117 71 10 chr9 25361902 25362231 -92500396 - MER61D-int LTR ERV1 0 5217 4910 291 28 0 0 chr9 25362231 25362267 -92500360 + (CAA)n Simple_repeat Simple_repeat 2 37 0 6856 117 71 10 chr9 25362267 25363074 -92499553 - MER61D-int LTR ERV1 -307 4910 4011 10158 97 35 16 chr9 25363074 25363193 -92499434 - MER61D-int LTR ERV1 -1316 3901 3786 2272 118 0 7 chr9 25363193 25363499 -92499128 - AluSx SINE Alu -8 304 1 10158 97 35 16 chr9 25363499 25365048 -92497579 - MER61D-int LTR ERV1 -1431 3786 2201 734 152 62 7 chr9 25365028 25365173 -92497454 - MER61D-int LTR ERV1 -3338 4199 4047 * 3143 185 41 44 chr9 25365164 25366692 -92495935 - MER61D-int LTR ERV1 -3577 2006 183 269 254 53 35 chr9 25366722 25366836 -92495791 - MER61D-int LTR ERV1 -6475 521 406 539 204 44 29 chr9 25366853 25366990 -92495637 - MER61D-int LTR ERV1 -5077 140 2 2158 157 40 38 chr9 25366990 25367385 -92495242 - MER61D LTR ERV1 0 501 106 26 0 0 0 chr9 25367463 25367489 -92495138 + AT_rich Low_complexity Low_complexity 1 26 0 2244 122 0 0 chr9 25367786 25368089 -92494538 - AluSc SINE Alu -6 303 1 22 70 0 0 chr9 25368335 25368378 -92494249 + AT_rich Low_complexity Low_complexity 1 43 0 1982 155 0 0 chr9 25368839 25369143 -92493484 - AluSx SINE Alu -8 304 1 679 297 126 10 chr9 25369384 25369694 -92492933 - L2 LINE L2 0 3313 2968 264 279 59 44 chr9 25369712 25369848 -92492779 - MIR SINE MIR -50 212 75 409 303 59 26 chr9 25369881 25370033 -92492594 + MIR SINE MIR 74 230 -32 1549 175 104 0 chr9 25370060 25370368 -92492259 + MER58B DNA MER1_type 1 340 -1 186 118 0 0 chr9 25370418 25370452 -92492175 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 4811 129 9 11 chr9 25370452 25371235 -92491392 - L1MA5A LINE L1 -9 6288 5508 1332 177 5 0 chr9 25371690 25371905 -92490722 - AluJb SINE Alu -12 300 85 394 310 110 32 chr9 25371927 25372410 -92490217 - L1MC/D LINE L1 -2012 5796 5271 22 35 0 0 chr9 25372789 25372818 -92489809 + AT_rich Low_complexity Low_complexity 1 29 0 246 302 63 0 chr9 25372818 25372944 -92489683 - L1ME3A LINE L1 -13 6157 6024 271 312 0 11 chr9 25373055 25373148 -92489479 - L1MC/D LINE L1 -2053 4093 4002 2333 71 0 0 chr9 25374336 25374619 -92488008 - AluY SINE Alu -17 294 12 9699 123 41 8 chr9 25374776 25376293 -92486334 + Tigger1 DNA MER2_type 23 1589 -829 306 101 30 30 chr9 25377511 25377610 -92485017 + (TA)n Simple_repeat Simple_repeat 2 100 0 2375 159 9 16 chr9 25377708 25378147 -92484480 + Tigger1 DNA MER2_type 1577 2012 -406 434 236 137 47 chr9 25378171 25378404 -92484223 - L1MC/D LINE L1 -3093 3053 2800 530 304 108 30 chr9 25378410 25378772 -92483855 - L1MC4a LINE L1 -1960 5848 5459 1598 211 141 65 chr9 25378776 25379358 -92483269 + MLT1E2 LTR MaLR 1 626 0 2012 143 76 15 chr9 25379877 25380220 -92482407 + THE1B LTR MaLR 1 364 0 284 67 67 0 chr9 25380407 25380449 -92482178 - MLT2B2 LTR ERVL 0 515 471 1538 186 48 18 chr9 25380449 25380529 -92482098 - Tigger2 DNA MER2_type 0 2718 2642 2126 130 0 0 chr9 25380529 25380828 -92481799 + AluY SINE Alu 1 299 -12 1538 186 48 18 chr9 25380828 25381081 -92481546 - Tigger2 DNA MER2_type -76 2642 2375 28452 125 16 67 chr9 25381224 25382193 -92480434 - L1P LINE L1 -1075 5071 4055 5312 167 27 30 chr9 25382193 25383267 -92479360 + MER11C LTR ERVK 1 1071 0 28452 125 16 67 chr9 25383267 25387637 -92474990 - L1P LINE L1 -2091 4055 1 2208 119 0 7 chr9 25387657 25387967 -92474660 - AluSg SINE Alu -2 308 1 243 220 55 18 chr9 25387971 25388080 -92474547 - L1P LINE L1 -734 5420 5308 1973 168 35 0 chr9 25388100 25388474 -92474153 - L1PB4 LINE L1 0 6156 5770 1610 174 4 14 chr9 25388525 25388801 -92473826 - AluJo SINE Alu -39 273 1 562 244 42 115 chr9 25388992 25389541 -92473086 - L1MC4a LINE L1 -1156 4990 4482 1511 205 28 9 chr9 25389559 25389886 -92472741 - L1M4 LINE L1 -460 6216 5884 491 162 31 0 chr9 25389889 25390085 -92472542 + (TA)n Simple_repeat Simple_repeat 1 202 0 1128 201 7 44 chr9 25390085 25390378 -92472249 - L1M4 LINE L1 -904 5740 5459 4005 249 46 29 chr9 25390394 25390819 -92471808 - L1M4 LINE L1 -5305 1237 821 228 35 0 0 chr9 25390819 25390848 -92471779 + (TG)n Simple_repeat Simple_repeat 2 30 0 4005 249 46 29 chr9 25390848 25391633 -92470994 - L1M4 LINE L1 -5721 821 6 1206 137 0 0 chr9 25391905 25392073 -92470554 + AluSg1 SINE Alu 4 171 -138 361 283 28 0 chr9 25392079 25392185 -92470442 + MIR SINE MIR 104 212 -50 226 323 85 30 chr9 25393588 25393773 -92468854 - MIR SINE MIR -50 212 18 2152 133 7 0 chr9 25393785 25394094 -92468533 - AluSx SINE Alu -1 311 1 780 261 10 15 chr9 25394574 25394769 -92467858 + LTR33 LTR ERVL 1 194 -327 454 176 157 10 chr9 25394922 25395024 -92467603 + LTR33 LTR ERVL 405 521 0 2279 70 0 3 chr9 25395302 25395620 -92467007 + AluY SINE Alu 1 317 0 3686 209 38 17 chr9 25396042 25396931 -92465696 + L1ME1 LINE L1 5254 6161 -5 430 35 0 0 chr9 25397594 25397652 -92464975 + L1PA2 LINE L1 6098 6155 0 223 304 180 3 chr9 25398272 25398426 -92464201 - MIR SINE MIR -18 244 49 1980 153 3 3 chr9 25399053 25399361 -92463266 - AluJb SINE Alu 0 312 5 207 0 0 0 chr9 25399792 25399815 -92462812 + (TTCA)n Simple_repeat Simple_repeat 3 25 0 458 297 43 7 chr9 25402577 25402715 -92459912 + MIR SINE MIR 20 162 -100 21 0 0 0 chr9 25403442 25403463 -92459164 + AT_rich Low_complexity Low_complexity 1 21 0 2594 102 3 6 chr9 25403758 25404121 -92458506 - THE1B LTR MaLR -2 362 1 560 226 95 0 chr9 25404691 25404828 -92457799 + MER3 DNA MER1_type 1 150 -59 4806 170 37 34 chr9 25404842 25405804 -92456823 - L1MA4 LINE L1 0 6300 5342 2068 79 0 4 chr9 25405804 25406057 -92456570 + AluSc SINE Alu 14 265 -44 216 0 0 0 chr9 25406060 25406084 -92456543 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 192 40 0 0 chr9 25406086 25406111 -92456516 + (TA)n Simple_repeat Simple_repeat 1 25 0 4806 170 37 34 chr9 25406111 25406574 -92456053 - L1MA4 LINE L1 -959 5341 4843 19631 171 43 8 chr9 25406577 25406662 -92455965 + L1MA1 LINE L1 13 94 -7471 182 88 0 29 chr9 25406662 25406696 -92455931 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 19631 171 43 8 chr9 25406696 25408264 -92454363 + L1MA1 LINE L1 94 1606 -5959 369 0 0 0 chr9 25408264 25408305 -92454322 + (GA)n Simple_repeat Simple_repeat 2 42 0 19631 171 43 8 chr9 25408305 25412195 -92450432 + L1MA1 LINE L1 1606 5752 -1813 23958 81 9 7 chr9 25412198 25418329 -92444298 + L1PA6 LINE L1 11 6145 -9 4654 146 27 38 chr9 25418319 25419676 -92442951 + L1MA1 LINE L1 5732 7068 -653 * 2998 108 11 4 chr9 25419776 25420228 -92442399 + L1MA1 LINE L1 7267 7721 0 3590 169 8 8 chr9 25420246 25420494 -92442133 - L1 LINE L1 -1286 4860 4613 2211 114 3 0 chr9 25420494 25420801 -92441826 - AluSp SINE Alu -5 308 1 3590 169 8 8 chr9 25420801 25421278 -92441349 - L1 LINE L1 -1532 4614 4135 394 169 0 0 chr9 25421279 25421350 -92441277 + MER3 DNA MER1_type 139 209 0 294 222 0 0 chr9 25421303 25421357 -92441270 - MER3 DNA MER1_type -115 94 41 * 21 89 0 0 chr9 25421847 25421903 -92440724 + AT_rich Low_complexity Low_complexity 1 56 0 396 0 0 0 chr9 25423342 25423386 -92439241 + (TA)n Simple_repeat Simple_repeat 2 45 0 21 0 0 0 chr9 25423387 25423408 -92439219 + AT_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chr9 25424706 25424733 -92437894 + (CA)n Simple_repeat Simple_repeat 1 27 0 878 176 90 5 chr9 25424892 25425080 -92437547 - MER3 DNA MER1_type 0 209 6 34 24 0 0 chr9 25425117 25425158 -92437469 + AT_rich Low_complexity Low_complexity 1 41 0 1516 185 3 14 chr9 25425398 25425716 -92436911 + AluJb SINE Alu 1 315 0 1640 105 31 0 chr9 25426979 25427236 -92435391 - L1MA1 LINE L1 0 6302 6038 246 353 13 51 chr9 25427860 25428016 -92434611 + L3 LINE CR1 636 785 -792 1385 208 47 9 chr9 25428257 25428574 -92434053 - MER45B DNA AcHobo 0 1040 712 1974 79 0 4 chr9 25428574 25428840 -92433787 + THE1-int LTR MaLR 1 265 -1315 712 270 123 19 chr9 25429245 25429604 -92433023 - L1ME4a LINE L1 -211 5910 5515 1247 181 41 0 chr9 25430005 25430226 -92432401 + AluJb SINE Alu 83 312 0 25 51 0 0 chr9 25430379 25430418 -92432209 + AT_rich Low_complexity Low_complexity 1 39 0 216 97 0 0 chr9 25431191 25431222 -92431405 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 23 0 0 0 chr9 25432217 25432240 -92430387 + AT_rich Low_complexity Low_complexity 1 23 0 6751 258 83 36 chr9 25433543 25435798 -92426829 - L1ME1 LINE L1 -8 6953 4804 2152 68 6 71 chr9 25435798 25436120 -92426507 + AluY SINE Alu 1 301 -10 6751 258 83 36 chr9 25436120 25436194 -92426433 - L1ME1 LINE L1 -2157 4804 4735 1947 138 7 3 chr9 25436194 25436499 -92426128 + AluSx SINE Alu 7 312 0 6751 258 83 36 chr9 25436499 25437478 -92425149 - L1ME1 LINE L1 -2226 4735 3803 8830 79 3 0 chr9 25437478 25439438 -92423189 - L1PA6 LINE L1 0 6154 4183 6751 258 83 36 chr9 25439438 25440755 -92421872 - L1ME1 LINE L1 -3158 3803 2548 310 0 67 0 chr9 25440755 25440800 -92421827 + (TATAA)n Simple_repeat Simple_repeat 3 50 0 6751 258 83 36 chr9 25440800 25441327 -92421300 - L1ME1 LINE L1 -4413 2548 2047 2219 108 10 0 chr9 25441327 25441633 -92420994 - AluSp SINE Alu -4 309 1 6751 258 83 36 chr9 25441633 25442142 -92420485 - L1ME1 LINE L1 -4914 2047 821 1789 251 19 2 chr9 25442165 25442591 -92420036 - MLT1C LTR MaLR -1 466 34 1514 174 79 82 chr9 25442604 25442995 -92419632 - MLT1B LTR MaLR 0 390 1 409 303 64 21 chr9 25443703 25443937 -92418690 - L1ME LINE L1 -302 5819 5576 195 402 18 9 chr9 25444126 25444238 -92418389 + MIR3 SINE MIR 47 159 -49 857 339 38 13 chr9 25445613 25445985 -92416642 + LTR16A LTR ERVL 20 400 -50 759 293 31 27 chr9 25446021 25446280 -92416347 - MIR SINE MIR 0 262 3 24 32 0 0 chr9 25446438 25446469 -92416158 + AT_rich Low_complexity Low_complexity 1 31 0 31 26 0 0 chr9 25446939 25446977 -92415650 + AT_rich Low_complexity Low_complexity 1 38 0 234 315 71 39 chr9 25446982 25447109 -92415518 - MIR SINE MIR -40 222 92 2258 128 27 3 chr9 25447140 25447506 -92415121 + THE1C LTR MaLR 1 375 0 359 283 196 38 chr9 25448053 25448237 -92414390 + MIR SINE MIR 2 214 -48 503 359 21 24 chr9 25448328 25448657 -92413970 - L2 LINE L2 -703 2611 2284 23 0 0 0 chr9 25448800 25448823 -92413804 + AT_rich Low_complexity Low_complexity 1 23 0 383 297 34 0 chr9 25448949 25449067 -92413560 - L2 LINE L2 -5 3308 3187 1326 267 84 41 chr9 25449076 25449762 -92412865 + HAL1b LINE L1 267 982 -366 1911 211 44 12 chr9 25499767 25500323 -92362304 + L1M2c LINE L1 1152 1698 -4513 * 2540 143 27 40 chr9 25500310 25500367 -92362260 - L1MA7 LINE L1 -457 5834 5778 207 0 0 0 chr9 25500367 25500390 -92362237 + (TA)n Simple_repeat Simple_repeat 1 23 0 2540 143 27 40 chr9 25500390 25500813 -92361814 - L1MA7 LINE L1 -513 5778 5360 1089 175 21 3 chr9 25500816 25501149 -92361478 + L1MA7 LINE L1 5836 6280 -11 2944 253 50 33 chr9 25501174 25502835 -92359792 + L1M4c LINE L1 1459 3160 -3222 56 29 0 0 chr9 25502837 25502907 -92359720 + AT_rich Low_complexity Low_complexity 1 70 0 403 341 89 11 chr9 25502961 25503140 -92359487 + MIR SINE MIR 13 205 -57 249 163 0 0 chr9 25503365 25503414 -92359213 + GA-rich Low_complexity Low_complexity 2 50 0 196 313 133 8 chr9 25503587 25503715 -92358912 + L2 LINE L2 2916 3059 -254 2235 112 3 0 chr9 25503758 25504063 -92358564 - AluSx SINE Alu -6 306 1 711 133 13 164 chr9 25504079 25504109 -92358518 + L1MA9 LINE L1 6121 6154 -158 297 0 0 0 chr9 25504109 25504142 -92358485 + (CA)n Simple_repeat Simple_repeat 2 34 0 711 133 13 164 chr9 25504142 25504337 -92358290 + L1MA9 LINE L1 6154 6312 0 17104 31 2 1 chr9 25505108 25507939 -92354688 - L1PA3 LINE L1 -1 6154 3321 456 289 173 6 chr9 25509962 25510118 -92352509 - MIR SINE MIR -75 187 6 2006 256 81 39 chr9 25510694 25511420 -92351207 - L1ME3A LINE L1 -13 6157 5358 2078 142 0 0 chr9 25511420 25511716 -92350911 - AluSx SINE Alu -16 296 1 2006 256 81 39 chr9 25511716 25512095 -92350532 - L1ME3A LINE L1 -812 5358 4997 192 40 0 0 chr9 25513533 25513558 -92349069 + (CA)n Simple_repeat Simple_repeat 2 26 0 219 114 0 0 chr9 25514020 25514055 -92348572 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 1371 77 0 57 chr9 25514055 25514148 -92348479 - L1PA8 LINE L1 -24 6148 6051 2406 98 0 0 chr9 25514148 25514455 -92348172 - AluSq SINE Alu -6 307 1 1371 77 0 57 chr9 25514455 25514570 -92348057 - L1PA8 LINE L1 -121 6051 5952 27 0 0 0 chr9 25514840 25514867 -92347760 + AT_rich Low_complexity Low_complexity 1 27 0 342 338 74 17 chr9 25515022 25515253 -92347374 + L1M4 LINE L1 4522 4765 -1381 206 286 57 29 chr9 25515529 25515599 -92347028 + L2 LINE L2 3242 3313 0 1467 186 259 5 chr9 25515757 25515800 -92346827 - MLT2B1 LTR ERVL 0 520 489 303 28 0 0 chr9 25515800 25515836 -92346791 + (TG)n Simple_repeat Simple_repeat 1 36 0 1467 186 259 5 chr9 25515836 25516205 -92346422 - MLT2B1 LTR ERVL -31 489 3 204 318 23 34 chr9 25516666 25516754 -92345873 - L2 LINE L2 0 3313 3227 4139 107 40 54 chr9 25516866 25517032 -92345595 - LTR8 LTR ERV1 0 691 524 207 0 0 0 chr9 25517032 25517055 -92345572 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 1950 112 11 4 chr9 25517060 25517338 -92345289 - AluSx SINE Alu -30 282 3 4139 107 40 54 chr9 25517338 25517866 -92344761 - LTR8 LTR ERV1 -171 520 1 458 332 43 5 chr9 25517908 25518095 -92344532 - L2 LINE L2 -516 2798 2605 292 244 103 0 chr9 25518125 25518203 -92344424 - MER69A DNA AcHobo -31 146 61 252 333 84 40 chr9 25518259 25518532 -92344095 - L2 LINE L2 -721 2593 2309 1677 190 25 19 chr9 25520727 25520863 -92341764 + MLT1A1 LTR MaLR 1 135 -230 6767 49 1 0 chr9 25520863 25521705 -92340922 + L1PA4 LINE L1 5310 6152 -3 1677 190 25 19 chr9 25521705 25521931 -92340696 + MLT1A1 LTR MaLR 135 365 0 428 209 163 8 chr9 25522083 25522212 -92340415 - L1ME LINE L1 -437 5684 5536 585 302 106 39 chr9 25522330 25522737 -92339890 - L1ME LINE L1 -748 5398 4965 1037 287 98 25 chr9 25522737 25523134 -92339493 + MLT1J2 LTR MaLR 1 426 -24 223 338 133 13 chr9 25523402 25523553 -92339074 + L2 LINE L2 2697 2865 -449 594 309 30 0 chr9 25524149 25524350 -92338277 - LTR33 LTR ERVL 0 521 315 292 333 44 18 chr9 25524419 25524533 -92338094 - LTR33A LTR ERVL -334 189 73 239 192 19 0 chr9 25525663 25525715 -92336912 + (CAT)n Simple_repeat Simple_repeat 1 53 0 320 276 82 0 chr9 25525735 25525833 -92336794 - MIR SINE MIR -26 236 131 200 352 64 32 chr9 25525868 25525993 -92336634 + L2 LINE L2 3141 3269 -3 2724 217 22 11 chr9 25527409 25527424 -92335203 - L1P LINE L1 -2451 3695 3682 285 29 0 0 chr9 25527424 25527458 -92335169 + (TTG)n Simple_repeat Simple_repeat 3 36 0 2724 217 22 11 chr9 25527458 25528153 -92334474 - L1P LINE L1 -2464 3682 2977 * 5863 147 12 2 chr9 25528152 25529224 -92333403 + L1PA15 LINE L1 5072 6164 -1 216 0 0 0 chr9 25529892 25529916 -92332711 + (T)n Simple_repeat Simple_repeat 1 24 0 2254 119 3 0 chr9 25530406 25530716 -92331911 + AluSq SINE Alu 1 311 -2 347 227 91 11 chr9 25530721 25530809 -92331818 + L2 LINE L2 3169 3263 -9 210 91 0 0 chr9 25530812 25530845 -92331782 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 353 251 33 49 chr9 25532405 25532588 -92330039 + L1ME4a LINE L1 5727 5906 -215 249 33 0 0 chr9 25532928 25532958 -92329669 + (TG)n Simple_repeat Simple_repeat 2 31 0 359 344 44 15 chr9 25533423 25533630 -92328997 + MIR SINE MIR 45 256 -6 647 119 50 0 chr9 25533747 25533848 -92328779 + MLT1B LTR MaLR 1 106 -284 640 170 9 0 chr9 25533852 25533964 -92328663 + AluSq/x SINE Alu 1 113 -200 4123 115 95 101 chr9 25533964 25535377 -92327250 + pTR5 LTR ERV1 66 2438 0 577 239 90 0 chr9 25535402 25535575 -92327052 + FRAM SINE Alu 1 50 0 1166 198 48 58 chr9 25535575 25535868 -92326759 + MLT1B LTR MaLR 101 390 0 225 353 57 0 chr9 25536807 25536929 -92325698 + MIR3 SINE MIR 75 203 -5 250 329 37 0 chr9 25537090 25537172 -92325455 + L2 LINE L2 3228 3312 -1 363 224 216 0 chr9 25537488 25537604 -92325023 + L2 LINE L2 3173 3313 0 200 242 53 42 chr9 25538293 25538388 -92324239 + L2 LINE L2 2170 2265 -1049 252 258 0 0 chr9 25540147 25540209 -92322418 + (CAATT)n Simple_repeat Simple_repeat 1 62 0 287 352 22 0 chr9 25540209 25540300 -92322327 - L2 LINE L2 -8 3264 3172 2623 123 6 105 chr9 25540440 25540937 -92321690 - LTR32 LTR ERVL -9 462 15 522 234 48 110 chr9 25541926 25541990 -92320637 + MIR SINE MIR 49 115 -147 2427 77 3 0 chr9 25541990 25542300 -92320327 + AluY SINE Alu 1 311 0 522 234 48 110 chr9 25542300 25542462 -92320165 + MIR SINE MIR 115 261 -1 312 196 144 21 chr9 25543200 25543297 -92319330 - MER103 DNA DNA -4 162 54 1632 195 13 16 chr9 25543311 25543614 -92319013 - AluJb SINE Alu -10 302 1 21 36 0 0 chr9 25546027 25546055 -92316572 + AT_rich Low_complexity Low_complexity 1 28 0 51 42 0 0 chr9 25547102 25547174 -92315453 + AT_rich Low_complexity Low_complexity 1 72 0 7165 227 67 12 chr9 25547894 25549713 -92312914 - L1MC/D LINE L1 -743 5403 3457 1963 132 0 21 chr9 25549713 25550095 -92312532 - AluSq SINE Alu 0 376 1 7165 227 67 12 chr9 25550095 25550587 -92312040 - L1MC/D LINE L1 -2689 3457 2993 1274 197 7 62 chr9 25550596 25550900 -92311727 + AluJo SINE Alu 11 297 -15 1249 258 15 36 chr9 25550902 25551371 -92311256 - L1MC/D LINE L1 -3144 3002 2544 207 359 63 6 chr9 25551390 25551549 -92311078 + L3 LINE CR1 685 852 -725 23 33 0 0 chr9 25553263 25553293 -92309334 + AT_rich Low_complexity Low_complexity 1 30 0 344 292 62 45 chr9 25554835 25555078 -92307549 + L1MEd LINE L1 830 1076 -5043 781 136 54 27 chr9 25555094 25555241 -92307386 - MLT1B LTR MaLR -239 151 1 272 355 13 13 chr9 25555257 25555412 -92307215 + L1ME LINE L1 5491 5645 -521 1651 172 7 24 chr9 25555596 25555887 -92306740 + AluJo SINE Alu 6 291 -21 1492 204 92 67 chr9 25556036 25556527 -92306100 + MLT1D LTR MaLR 1 503 -2 21 0 0 0 chr9 25556860 25556881 -92305746 + AT_rich Low_complexity Low_complexity 1 21 0 397 202 17 34 chr9 25557796 25557974 -92304653 + CT-rich Low_complexity Low_complexity 4 178 0 312 27 0 0 chr9 25558819 25558856 -92303771 + (CA)n Simple_repeat Simple_repeat 1 37 0 1680 172 4 4 chr9 25558862 25559135 -92303492 - AluJo SINE Alu -31 281 9 35 54 0 0 chr9 25559617 25559673 -92302954 + AT_rich Low_complexity Low_complexity 1 56 0 1525 275 96 29 chr9 25559678 25560394 -92302233 - L1ME3 LINE L1 -2 6160 5397 1688 134 48 101 chr9 25560404 25560800 -92301827 - THE1C LTR MaLR 0 375 1 216 0 0 0 chr9 25561024 25561048 -92301579 + (TA)n Simple_repeat Simple_repeat 2 25 0 1911 143 4 0 chr9 25561048 25561327 -92301300 - AluSx SINE Alu -27 285 6 1825 290 82 17 chr9 25561342 25562789 -92299838 - L1ME3 LINE L1 -1070 5076 3494 2027 229 80 63 chr9 25562795 25563569 -92299058 - L1ME1 LINE L1 -5 6230 5444 2734 249 86 39 chr9 25563646 25564777 -92297850 - L1ME1 LINE L1 -5136 1260 77 1911 137 32 48 chr9 25564778 25565157 -92297470 + THE1C LTR MaLR 1 373 -2 28 29 0 0 chr9 25565219 25565254 -92297373 + AT_rich Low_complexity Low_complexity 1 35 0 9074 169 40 24 chr9 25565254 25567900 -92294727 - L1MA8 LINE L1 -6 6285 3563 2097 127 0 0 chr9 25567900 25568183 -92294444 - AluSx SINE Alu -27 285 3 9074 169 40 24 chr9 25568183 25568906 -92293721 - L1MA8 LINE L1 -2728 3563 2853 274 235 83 30 chr9 25568916 25569048 -92293579 - L1ME3 LINE L1 -2669 3477 3339 1844 199 25 0 chr9 25569358 25569714 -92292913 - MLT1A1 LTR MaLR 0 365 1 191 365 96 10 chr9 25569826 25569930 -92292697 + L2 LINE L2 3198 3310 -3 390 21 0 0 chr9 25570961 25571008 -92291619 + (TG)n Simple_repeat Simple_repeat 1 47 0 244 321 37 9 chr9 25571441 25571550 -92291077 - MIR3 SINE MIR -13 195 84 15173 32 0 0 chr9 25571551 25573374 -92289253 - L1P LINE L1 -892 5254 3432 4500 32 2 0 chr9 25573374 25573946 -92288681 + L1PA3 LINE L1 5617 6192 0 294 253 25 13 chr9 25574202 25574281 -92288346 - L2 LINE L2 -4 3309 3230 389 309 93 34 chr9 25574301 25574505 -92288122 + MIR SINE MIR 40 255 -7 11851 174 20 14 chr9 25575110 25576115 -92286512 - L1PA13 LINE L1 -1 6162 5165 2197 116 0 0 chr9 25576115 25576409 -92286218 - AluSc SINE Alu -15 294 1 11851 174 20 14 chr9 25576409 25578555 -92284072 - L1PA13 LINE L1 -998 5165 2986 2074 152 33 25 chr9 25578556 25578917 -92283710 - THE1B LTR MaLR 0 364 1 9887 115 10 31 chr9 25578917 25580406 -92282221 - THE1B-int LTR MaLR 0 1580 123 317 146 0 0 chr9 25580406 25580454 -92282173 - THE1C LTR MaLR -327 48 1 640 158 0 0 chr9 25580454 25580568 -92282059 - L1PA13 LINE L1 -3157 2989 2876 357 288 92 32 chr9 25580989 25581454 -92281173 - L1M4 LINE L1 -751 5395 4903 279 327 54 25 chr9 25582351 25582629 -92279998 + L1ME4a LINE L1 5607 5892 -229 237 179 73 98 chr9 25582669 25582792 -92279835 + L1ME4a LINE L1 5991 6110 -11 816 296 28 33 chr9 25582862 25583224 -92279403 - L1ME3 LINE L1 0 6162 5803 493 160 4 153 chr9 25583248 25583406 -92279221 - L1ME3 LINE L1 -587 5579 5457 419 298 60 22 chr9 25583501 25583820 -92278807 - L1ME LINE L1 -5064 1006 676 330 285 83 43 chr9 25584516 25584867 -92277760 - L1MEc LINE L1 -3825 2390 2066 1857 203 46 28 chr9 25585019 25585478 -92277149 - MLT1C LTR MaLR 0 467 1 248 274 80 28 chr9 25585640 25585852 -92276775 - L1MEc LINE L1 -4606 1609 1387 7098 47 9 1 chr9 25585859 25587038 -92275589 + L1PA5 LINE L1 4962 6147 -7 204 40 0 0 chr9 25587119 25587144 -92275483 + (TATG)n Simple_repeat Simple_repeat 2 26 0 1122 258 59 94 chr9 25587286 25587762 -92274865 + LTR40a LTR ERVL 2 517 -2 2161 115 3 0 chr9 25587778 25588074 -92274553 + AluSx SINE Alu 1 297 -15 823 215 84 34 chr9 25588195 25588553 -92274074 - L1MEc LINE L1 -5063 1333 958 1279 194 169 3 chr9 25588557 25588871 -92273756 + MER47A DNA MER2_type 1 366 0 967 283 36 26 chr9 25588892 25589313 -92273314 - L1MEc LINE L1 -5462 934 510 4531 186 37 14 chr9 25589857 25590814 -92271813 - L1MC1 LINE L1 -5 6328 5350 950 142 59 50 chr9 25590826 25591045 -92271582 - L1MCa LINE L1 -4432 1994 1774 546 192 15 39 chr9 25591068 25591198 -92271429 - L1MB3 LINE L1 -9 6174 6048 1121 239 152 16 chr9 25591480 25591802 -92270825 - MSTD LTR MaLR -30 366 1 199 306 143 34 chr9 25593543 25593752 -92268875 - L2 LINE L2 -166 3147 2916 265 331 118 24 chr9 25594034 25594203 -92268424 - MIR SINE MIR -50 212 28 4901 193 23 36 chr9 25594441 25596358 -92266269 - L1MA10 LINE L1 -41 6529 4643 21 36 0 0 chr9 25596370 25596398 -92266229 + AT_rich Low_complexity Low_complexity 1 28 0 6085 149 28 21 chr9 25596398 25596978 -92265649 - L1MA3 LINE L1 0 7724 7149 2422 97 43 6 chr9 25596978 25597328 -92265299 + THE1B LTR MaLR 1 363 -1 6085 149 28 21 chr9 25597328 25597818 -92264809 - L1MA3 LINE L1 -575 7149 6654 2299 93 3 10 chr9 25597818 25598131 -92264496 - AluY SINE Alu 0 311 1 6085 149 28 21 chr9 25598131 25598451 -92264176 - L1MA3 LINE L1 -1070 6654 6338 807 140 20 27 chr9 25598480 25598630 -92263997 - L1MA3 LINE L1 -4160 3405 3257 3939 183 25 18 chr9 25598631 25599379 -92263248 - L1MA10 LINE L1 -1752 4630 3874 3061 86 58 0 chr9 25599379 25599807 -92262820 - MLT2A2 LTR ERVL 0 453 1 3939 183 25 18 chr9 25599807 25599909 -92262718 - L1MA10 LINE L1 -2508 3874 3774 1124 268 56 24 chr9 25599908 25600599 -92262028 - L1MA10 LINE L1 -3613 2769 2044 * 2106 301 89 30 chr9 25600694 25601319 -92261308 - L1MA10 LINE L1 -5210 1103 516 2204 145 11 16 chr9 25601319 25601685 -92260942 + THE1B LTR MaLR 1 364 0 11168 98 13 5 chr9 25601685 25603247 -92259380 + THE1B-int LTR MaLR 1 1576 -4 1989 166 28 22 chr9 25603251 25603613 -92259014 + THE1B LTR MaLR 1 364 0 2106 301 89 30 chr9 25603613 25603860 -92258767 - L1MA10 LINE L1 -5799 514 173 7681 191 23 40 chr9 25603860 25605593 -92257034 - L1MCa LINE L1 -4284 2143 5 1331 303 106 19 chr9 25605596 25606219 -92256408 - HAL1 LINE L1 -1828 679 3 299 261 0 0 chr9 25606504 25606573 -92256054 - L2 LINE L2 -1 3312 3244 29 0 0 0 chr9 25607150 25607179 -92255448 + AT_rich Low_complexity Low_complexity 1 29 0 435 256 31 3 chr9 25607277 25607386 -92255241 - MLT1J2 LTR MaLR -280 199 70 24 53 0 0 chr9 25607677 25607715 -92254912 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr9 25608310 25608331 -92254296 + AT_rich Low_complexity Low_complexity 1 21 0 261 314 95 95 chr9 25608797 25609039 -92253588 + MLT1K LTR MaLR 118 359 -229 1165 75 6 0 chr9 25609070 25609231 -92253396 + L1PB2 LINE L1 5987 6148 -3 195 235 0 0 chr9 25609465 25609563 -92253064 + (TA)n Simple_repeat Simple_repeat 1 98 0 197 349 16 0 chr9 25609601 25609664 -92252963 + L2 LINE L2 3174 3237 -35 4361 201 25 46 chr9 25609669 25610589 -92252038 + MER54A LTR ERVL 1 901 0 659 302 72 4 chr9 25610808 25611049 -92251578 + MIR SINE MIR 6 262 0 350 269 163 0 chr9 25611840 25611981 -92250646 + MIR SINE MIR 79 242 -20 276 154 0 0 chr9 25612645 25612697 -92249930 + T-rich Low_complexity Low_complexity 1 52 0 5613 22 3 2 chr9 25612745 25613587 -92249040 - L1PA4 LINE L1 -598 5557 4715 4687 36 5 12 chr9 25613587 25614154 -92248473 + L1PA4 LINE L1 5571 6153 -2 192 337 0 47 chr9 25614302 25614388 -92248239 + MIR SINE MIR 30 111 -97 973 180 6 11 chr9 25614408 25614586 -92248041 + MER5B DNA MER1_type 1 177 -1 253 327 56 0 chr9 25616563 25616670 -92245957 + L2 LINE L2 3147 3259 -13 646 189 104 62 chr9 25617230 25617590 -92245037 + MLT1G LTR MaLR 109 590 0 537 242 52 7 chr9 25618006 25618159 -92244468 - MER103 DNA DNA 0 166 7 21 36 0 0 chr9 25618608 25618636 -92243991 + AT_rich Low_complexity Low_complexity 1 28 0 268 195 381 0 chr9 25619451 25619569 -92243058 + MER103 DNA DNA 2 164 -2 192 301 135 19 chr9 25619812 25619940 -92242687 - MIR SINE MIR -67 141 29 402 80 0 40 chr9 25620446 25620521 -92242106 + (TTCTC)n Simple_repeat Simple_repeat 4 75 0 287 286 26 0 chr9 25621467 25621544 -92241083 + L2 LINE L2 3232 3310 -3 210 339 45 27 chr9 25621567 25621679 -92240948 - MIR SINE MIR -58 150 37 2333 66 0 3 chr9 25622186 25622488 -92240139 - AluY SINE Alu -10 301 1 25 0 0 0 chr9 25622676 25622701 -92239926 + AT_rich Low_complexity Low_complexity 1 25 0 42037 39 26 2 chr9 25623688 25629730 -92232897 - L1PA3 LINE L1 0 6155 7 180 77 0 0 chr9 25630344 25630370 -92232257 + (TGAA)n Simple_repeat Simple_repeat 4 29 0 1442 251 94 7 chr9 25630907 25631365 -92231262 + L2 LINE L2 2077 2574 -740 613 191 53 15 chr9 25631365 25631496 -92231131 - MER63 DNA MER1_type -60 776 15 662 246 56 6 chr9 25632019 25632198 -92230429 - MER5A DNA MER1_type 0 189 2 584 281 7 14 chr9 25632733 25632872 -92229755 + MER5A DNA MER1_type 2 139 -50 23 33 0 0 chr9 25633152 25633182 -92229445 + AT_rich Low_complexity Low_complexity 1 30 0 436 294 138 25 chr9 25633567 25633657 -92228970 - MER5B DNA MER1_type 0 178 100 1816 176 48 28 chr9 25633657 25634015 -92228612 - MLT1A1 LTR MaLR 0 365 1 436 294 138 25 chr9 25634015 25634084 -92228543 - MER5B DNA MER1_type -78 100 1 23 0 0 0 chr9 25634203 25634226 -92228401 + AT_rich Low_complexity Low_complexity 1 23 0 196 289 0 19 chr9 25635017 25635069 -92227558 - MIR SINE MIR -134 74 24 2744 87 0 0 chr9 25635780 25636149 -92226478 - L1PA11 LINE L1 -304 5864 5496 1759 131 39 26 chr9 25636151 25636456 -92226171 + L1PA11 LINE L1 5864 6172 -2 183 129 0 0 chr9 25636840 25636871 -92225756 + (TATATG)n Simple_repeat Simple_repeat 6 36 0 268 353 33 20 chr9 25637209 25637359 -92225268 - MIR3 SINE MIR -6 202 51 7464 94 5 20 chr9 25637923 25639007 -92223620 - MER11C LTR ERVK -4 1067 1 438 198 30 10 chr9 25639019 25639120 -92223507 - MER5A DNA MER1_type -77 112 10 599 279 65 5 chr9 25640549 25640764 -92221863 - L2 LINE L2 -259 3054 2827 627 297 115 63 chr9 25640799 25641343 -92221284 + L2 LINE L2 2714 3298 -15 190 184 29 39 chr9 25641372 25641475 -92221152 + CT-rich Low_complexity Low_complexity 4 105 0 27 0 0 0 chr9 25643615 25643642 -92218985 + AT_rich Low_complexity Low_complexity 1 27 0 388 282 125 68 chr9 25644209 25644923 -92217704 - L2 LINE L2 0 3313 2458 231 240 27 13 chr9 25645296 25645371 -92217256 - MIR SINE MIR -4 258 183 997 297 101 23 chr9 25645720 25646243 -92216384 - L2 LINE L2 0 3313 2753 1699 146 114 7 chr9 25646578 25646859 -92215768 + AluSx SINE Alu 1 311 -1 1932 187 25 42 chr9 25647121 25647596 -92215031 + MLT1C LTR MaLR 1 467 0 195 323 75 21 chr9 25648104 25648197 -92214430 - MIR SINE MIR -66 196 99 185 206 96 68 chr9 25648257 25648330 -92214297 - L2 LINE L2 -300 2972 2898 195 114 0 0 chr9 25648461 25648496 -92214131 + (TATG)n Simple_repeat Simple_repeat 4 38 0 225 0 0 0 chr9 25648719 25648744 -92213883 + (TG)n Simple_repeat Simple_repeat 2 26 0 1934 146 27 27 chr9 25649040 25649411 -92213216 - THE1C LTR MaLR -2 373 3 29 47 0 0 chr9 25649579 25649622 -92213005 + AT_rich Low_complexity Low_complexity 1 43 0 849 123 27 0 chr9 25649622 25649768 -92212859 - L1MA9 LINE L1 0 6312 6163 1056 103 35 0 chr9 25649768 25649942 -92212685 - L1MA9 LINE L1 -829 5483 5304 * 1532 236 3 5 chr9 25649940 25650309 -92212318 - L1 LINE L1 -1962 4420 4053 478 228 0 0 chr9 25650308 25650409 -92212218 + L1 LINE L1 3713 3813 -2333 * 2930 270 69 17 chr9 25650399 25651355 -92211272 - L1 LINE L1 -3630 2752 1896 1386 276 3 19 chr9 25651355 25651725 -92210902 - MLT1A1 LTR MaLR -1 364 1 2930 270 69 17 chr9 25651725 25652701 -92209926 - L1 LINE L1 -4486 1896 972 647 298 63 44 chr9 25653072 25653495 -92209132 - L1 LINE L1 -5857 456 33 2324 176 69 0 chr9 25653499 25653936 -92208691 - L1MC3 LINE L1 -11 7774 7308 234 0 0 0 chr9 25654365 25654391 -92208236 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 1994 114 17 3 chr9 25655176 25655465 -92207162 - AluSx SINE Alu -19 293 1 853 180 12 123 chr9 25655620 25655864 -92206763 + MER20 DNA MER1_type 1 217 -2 230 342 52 32 chr9 25657869 25658024 -92204603 - L2 LINE L2 -470 2844 2687 275 360 40 16 chr9 25658502 25658627 -92204000 + L2 LINE L2 3139 3266 -6 201 303 0 101 chr9 25660241 25660330 -92202297 + MIR SINE MIR 16 95 -113 189 0 0 0 chr9 25660719 25660740 -92201887 + (TA)n Simple_repeat Simple_repeat 1 21 0 268 107 71 0 chr9 25661758 25661842 -92200785 + (TCTA)n Simple_repeat Simple_repeat 1 90 0 21 36 0 0 chr9 25661902 25661930 -92200697 + AT_rich Low_complexity Low_complexity 1 28 0 2509 31 7 3 chr9 25662229 25662521 -92200106 - AluY SINE Alu -4 307 15 440 344 60 0 chr9 25663125 25663343 -92199284 + L2 LINE L2 2141 2371 -943 315 0 0 0 chr9 25665138 25665173 -92197454 + (CA)n Simple_repeat Simple_repeat 1 35 0 21 36 0 0 chr9 25665287 25665315 -92197312 + AT_rich Low_complexity Low_complexity 1 28 0 396 0 94 0 chr9 25665360 25665413 -92197214 - L1PA3 LINE L1 -1 6154 6097 2661 28 3 0 chr9 25665413 25665730 -92196897 + L1PA4 LINE L1 5762 6079 -76 2405 67 0 7 chr9 25666050 25666349 -92196278 + AluY SINE Alu 1 297 -14 273 265 15 0 chr9 25666458 25666526 -92196101 + MIR SINE MIR 85 153 -109 812 164 8 0 chr9 25666526 25666660 -92195967 + MER47A DNA MER2_type 4 138 -228 486 130 0 39 chr9 25666661 25666722 -92195905 - Tigger7 DNA MER2_type -27 2464 2405 2233 122 0 0 chr9 25666722 25667026 -92195601 - AluSx SINE Alu -8 304 1 486 130 0 39 chr9 25667026 25667041 -92195586 - Tigger7 DNA MER2_type -86 2405 2391 1331 228 15 0 chr9 25667056 25667315 -92195312 - Tigger7 DNA MER2_type -2223 264 2 1354 179 8 0 chr9 25667316 25667551 -92195076 + MER47A DNA MER2_type 129 365 -1 262 309 0 12 chr9 25667552 25667636 -92194991 + MIR SINE MIR 153 235 -27 242 250 0 0 chr9 25667648 25667700 -92194927 + MIR SINE MIR 210 261 -1 1057 115 0 0 chr9 25667921 25668077 -92194550 + L1MA1 LINE L1 6143 6298 -4 216 172 35 35 chr9 25668999 25669086 -92193541 + (TA)n Simple_repeat Simple_repeat 1 87 0 495 33 0 0 chr9 25669096 25669157 -92193470 + (CA)n Simple_repeat Simple_repeat 2 62 0 1906 96 7 38 chr9 25670075 25670366 -92192261 + AluSx SINE Alu 1 282 -30 315 0 0 0 chr9 25670371 25670406 -92192221 + (TAA)n Simple_repeat Simple_repeat 2 36 0 224 150 125 0 chr9 25670521 25670561 -92192066 - MIR SINE MIR -69 139 95 284 306 105 7 chr9 25671639 25671782 -92190845 - L1ME3A LINE L1 -9 6230 6073 464 279 220 40 chr9 25671848 25672221 -92190406 + LTR16A1 LTR ERVL 1 440 -17 548 251 67 124 chr9 25672304 25672649 -92189978 - L1ME3A LINE L1 -216 6023 5727 661 239 50 6 chr9 25672649 25672829 -92189798 - MER5A DNA MER1_type 0 189 2 548 251 67 124 chr9 25672829 25673096 -92189531 - L1ME3A LINE L1 -512 5727 5446 324 321 156 18 chr9 25673182 25673406 -92189221 - L1ME3A LINE L1 -1144 5071 4817 305 324 71 18 chr9 25673440 25673632 -92188995 - L1ME3A LINE L1 -3707 2508 2301 997 261 13 8 chr9 25673632 25673870 -92188757 - MER8 DNA MER2_type 0 239 1 305 324 71 18 chr9 25673870 25673902 -92188725 - L1ME3A LINE L1 -3914 2301 2272 256 275 0 0 chr9 25673916 25673996 -92188631 - L1ME3A LINE L1 -4098 2298 2219 218 224 0 17 chr9 25674083 25674141 -92188486 + (CATA)n Simple_repeat Simple_repeat 3 59 0 706 243 40 52 chr9 25674799 25675050 -92187577 - LTR33 LTR ERVL -236 285 38 952 246 33 0 chr9 25675444 25675655 -92186972 + MER58A DNA MER1_type 1 218 -6 312 342 74 21 chr9 25676059 25676249 -92186378 - MIR SINE MIR -10 252 53 636 206 160 29 chr9 25677815 25678053 -92184574 - L1ME3A LINE L1 -172 6067 5799 4212 45 6 0 chr9 25678694 25679232 -92183395 - L1PA5 LINE L1 -3303 2843 2303 20103 49 7 6 chr9 25679232 25682554 -92180073 + L1PA5 LINE L1 2812 6146 -8 844 261 108 30 chr9 25683466 25683899 -92178728 - L1ME3A LINE L1 -418 5813 5357 515 278 70 29 chr9 25683933 25684206 -92178421 - L1ME3A LINE L1 -844 5371 5088 356 254 28 108 chr9 25684212 25684499 -92178128 - L1ME3A LINE L1 -1220 4995 4732 350 303 18 46 chr9 25684496 25684714 -92177913 - L1ME3A LINE L1 -4604 1792 1581 * 827 222 5 0 chr9 25684863 25685066 -92177561 - L1MC3 LINE L1 -1 7784 7581 349 307 168 3 chr9 25685066 25685369 -92177258 - L1ME3A LINE L1 -5157 1048 696 921 120 0 0 chr9 25685458 25685600 -92177027 + (TCCCC)n Simple_repeat Simple_repeat 2 143 0 1721 194 7 0 chr9 25685616 25685925 -92176702 - AluJb SINE Alu -1 311 1 244 301 64 68 chr9 25686105 25686341 -92176286 - L1ME3A LINE L1 -5951 445 211 1974 176 14 3 chr9 25687117 25687475 -92175152 - MER47A DNA MER2_type -3 363 2 357 102 0 0 chr9 25687485 25687544 -92175083 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 1206 102 0 0 chr9 25687581 25687757 -92174870 + (TA)n Simple_repeat Simple_repeat 1 176 0 307 299 35 0 chr9 25687774 25687861 -92174766 - L1MC4 LINE L1 -1339 6703 6614 21 57 0 0 chr9 25687884 25687919 -92174708 + AT_rich Low_complexity Low_complexity 1 35 0 546 269 14 7 chr9 25688054 25688199 -92174428 - L2 LINE L2 -1 3312 3167 2775 201 81 32 chr9 25688982 25689114 -92173513 - LTR48 LTR ERV1 0 787 663 2660 110 0 3 chr9 25689114 25689479 -92173148 - THE1B LTR MaLR 0 364 1 9817 118 41 28 chr9 25689481 25691039 -92171588 - THE1B-int LTR MaLR -2 1578 1 2698 113 0 0 chr9 25691039 25691403 -92171224 - THE1B LTR MaLR 0 364 1 2775 201 81 32 chr9 25691403 25692016 -92170611 - LTR48 LTR ERV1 -123 664 1 275 358 42 17 chr9 25693302 25693422 -92169205 - MIR SINE MIR -120 142 20 818 181 41 13 chr9 25695574 25695793 -92166834 - L1MC3 LINE L1 0 7769 6114 1416 189 102 0 chr9 25695794 25696069 -92166558 - AluJo SINE Alu -7 305 3 339 44 0 0 chr9 25696668 25696713 -92165914 + (TG)n Simple_repeat Simple_repeat 2 46 0 333 289 77 0 chr9 25696730 25696834 -92165793 - L2 LINE L2 -3 3310 3199 236 203 54 27 chr9 25697857 25697931 -92164696 - L1MC4 LINE L1 -1353 6689 6614 441 302 36 7 chr9 25698475 25698614 -92164013 + MIR SINE MIR 8 150 -112 704 332 83 34 chr9 25698878 25699370 -92163257 - L2 LINE L2 -17 3296 2781 1235 340 103 12 chr9 25699441 25700199 -92162428 - L2 LINE L2 -1281 2033 1207 456 35 0 0 chr9 25700283 25700341 -92162286 + (CTG)n Simple_repeat Simple_repeat 2 59 0 1363 226 50 3 chr9 25700805 25701142 -92161485 - L1MB3 LINE L1 -8 6175 5823 11732 174 37 19 chr9 25701148 25702009 -92160618 - L1M4c LINE L1 -3884 2500 1656 207 0 0 0 chr9 25702009 25702032 -92160595 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 11732 174 37 19 chr9 25702032 25703609 -92159018 - L1M4c LINE L1 -4728 1656 18 39 22 0 0 chr9 25704357 25704403 -92158224 + AT_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr9 25704584 25704605 -92158022 + AT_rich Low_complexity Low_complexity 1 21 0 233 213 0 0 chr9 25705000 25705047 -92157580 + (TTCA)n Simple_repeat Simple_repeat 3 49 0 972 178 56 0 chr9 25705244 25705475 -92157152 + MER33 DNA MER1_type 48 291 -33 4442 188 29 59 chr9 25705482 25705893 -92156734 + L1MA10 LINE L1 4791 5213 -1121 1301 194 12 76 chr9 25705893 25706223 -92156404 + AluJo SINE Alu 1 309 -3 4442 188 29 59 chr9 25706223 25707246 -92155381 + L1MA10 LINE L1 5213 6163 -171 387 41 0 0 chr9 25707246 25707295 -92155332 + (CAT)n Simple_repeat Simple_repeat 3 51 0 4442 188 29 59 chr9 25707295 25707432 -92155195 + L1MA10 LINE L1 6163 6303 -31 256 157 78 0 chr9 25707466 25707517 -92155110 + MER33 DNA MER1_type 304 358 -5 33 43 0 0 chr9 25707609 25707656 -92154971 + AT_rich Low_complexity Low_complexity 1 47 0 25 31 0 0 chr9 25707709 25707741 -92154886 + AT_rich Low_complexity Low_complexity 1 32 0 5745 94 67 2 chr9 25707757 25709077 -92153550 - L1PA10 LINE L1 -2 6166 4813 2106 134 0 3 chr9 25710582 25710888 -92151739 + AluSc SINE Alu 3 307 -2 1796 167 146 3 chr9 25710964 25711335 -92151292 - MSTA LTR MaLR 0 428 5 363 272 9 26 chr9 25711406 25711520 -92151107 - L1MC4 LINE L1 -980 7062 6951 353 344 65 45 chr9 25711998 25712245 -92150382 - L3b LINE CR1 -55 1528 1277 184 329 110 0 chr9 25712363 25712445 -92150182 - MIR SINE MIR -7 255 165 1532 229 169 18 chr9 25712506 25712943 -92149684 + MLT2B1 LTR ERVL 18 520 0 315 253 67 0 chr9 25712944 25713019 -92149608 - MIR SINE MIR -182 80 1 223 269 0 0 chr9 25713074 25713126 -92149501 - MIR SINE MIR -110 152 101 651 196 14 184 chr9 25713130 25713477 -92149150 - MER4C LTR ERV1 -37 428 141 2300 90 7 7 chr9 25713969 25714279 -92148348 + AluSg SINE Alu 1 310 0 21 36 0 0 chr9 25714294 25714322 -92148305 + AT_rich Low_complexity Low_complexity 1 28 0 820 54 36 0 chr9 25714322 25714433 -92148194 - L1PA3 LINE L1 0 6155 6041 691 286 156 53 chr9 25715314 25715908 -92146719 - L2 LINE L2 -3 3310 2588 1825 143 60 33 chr9 25715908 25716273 -92146354 - THE1C LTR MaLR 0 375 1 691 286 156 53 chr9 25716273 25716613 -92146014 - L2 LINE L2 -725 2588 2284 1195 245 110 0 chr9 25716646 25716956 -92145671 + MER2 DNA MER2_type 2 345 0 498 307 49 7 chr9 25717141 25717296 -92145331 - MIR SINE MIR -66 142 21 235 394 19 7 chr9 25717301 25717456 -92145171 - L2 LINE L2 -1150 2164 2008 583 238 106 12 chr9 25717681 25717841 -92144786 - MIR SINE MIR -72 190 16 475 292 80 48 chr9 25717857 25718062 -92144565 + L1ME LINE L1 5088 5285 -884 2316 101 3 0 chr9 25718062 25718359 -92144268 + AluSp SINE Alu 1 298 -15 475 292 80 48 chr9 25718359 25718748 -92143879 + L1ME LINE L1 5285 5707 -462 2270 152 70 10 chr9 25718748 25719150 -92143477 - MSTB LTR MaLR 0 426 1 8218 184 42 34 chr9 25719161 25720782 -92141845 - MSTB-int LTR MaLR -17 1634 1 1495 207 146 16 chr9 25720782 25720974 -92141653 - MSTB LTR MaLR 0 426 260 213 39 0 0 chr9 25720974 25721000 -92141627 + (GA)n Simple_repeat Simple_repeat 2 27 0 1495 207 146 16 chr9 25721000 25721184 -92141443 - MSTB LTR MaLR -166 260 1 29 0 0 0 chr9 25721189 25721218 -92141409 + AT_rich Low_complexity Low_complexity 1 29 0 302 237 0 13 chr9 25721222 25721308 -92141319 + L1ME LINE L1 5724 5808 -356 323 311 198 21 chr9 25721351 25721685 -92140942 - L2 LINE L2 -1609 1705 1313 211 232 125 0 chr9 25721961 25722017 -92140610 - L2 LINE L2 -1 3271 3209 206 234 149 0 chr9 25722117 25722211 -92140416 - L2 LINE L2 -147 3166 3059 904 272 56 91 chr9 25722215 25722386 -92140241 - L2 LINE L2 -1463 1851 1675 1827 199 91 25 chr9 25722386 25722825 -92139802 + MLT2B1 LTR ERVL 3 478 -42 180 0 0 0 chr9 25722825 25722845 -92139782 + (TC)n Simple_repeat Simple_repeat 1 20 0 1827 199 91 25 chr9 25722845 25722887 -92139740 + MLT2B1 LTR ERVL 478 516 -4 904 272 56 91 chr9 25722887 25723273 -92139354 - L2 LINE L2 -1639 1675 1314 315 0 0 0 chr9 25724382 25724417 -92138210 + (TG)n Simple_repeat Simple_repeat 1 35 0 21 82 0 0 chr9 25724571 25724620 -92138007 + AT_rich Low_complexity Low_complexity 1 49 0 186 325 49 41 chr9 25725715 25725838 -92136789 + MIR SINE MIR 102 225 -37 208 258 0 45 chr9 25726450 25726516 -92136111 - MIR SINE MIR -42 220 158 397 313 17 34 chr9 25726616 25726795 -92135832 + MER117 DNA MER1_type 1 176 -21 248 247 55 27 chr9 25727890 25727963 -92134664 + L2 LINE L2 2213 2287 -1027 199 336 35 26 chr9 25727992 25728108 -92134519 + L2 LINE L2 2440 2556 -758 228 313 104 0 chr9 25728388 25728455 -92134172 + MIR SINE MIR 33 106 -156 332 362 67 82 chr9 25729181 25729496 -92133131 + L2 LINE L2 2963 3272 0 245 222 42 14 chr9 25729868 25729940 -92132687 + CT-rich Low_complexity Low_complexity 6 79 0 245 343 9 9 chr9 25730982 25731087 -92131540 - L1MC/D LINE L1 -2020 5788 5684 405 302 99 21 chr9 25731364 25731556 -92131071 - MIR SINE MIR -17 245 39 208 383 53 0 chr9 25731807 25731901 -92130726 + L2 LINE L2 3215 3313 0 383 151 0 0 chr9 25734766 25734839 -92127788 - L1MA8 LINE L1 0 6291 6219 22 35 0 0 chr9 25735481 25735510 -92127117 + AT_rich Low_complexity Low_complexity 1 29 0 2233 141 0 5 chr9 25735944 25736314 -92126313 - L1PB1 LINE L1 -1 6150 5783 300 169 0 0 chr9 25736325 25736402 -92126225 + (TA)n Simple_repeat Simple_repeat 2 78 0 6234 19 35 0 chr9 25736505 25737237 -92125390 - L1PA3 LINE L1 0 6155 5398 * 10167 27 1 0 chr9 25737231 25738451 -92124176 + L1PA3 LINE L1 4163 5383 -763 3299 94 62 3 chr9 25738447 25739027 -92123600 - L1PB1 LINE L1 -371 5780 5169 * 1031 175 41 0 chr9 25739007 25739201 -92123426 - L1PBa LINE L1 -5270 1593 1392 * 834 221 0 15 chr9 25739198 25739393 -92123234 - L1PBa LINE L1 -6666 197 6 * 377 329 58 0 chr9 25739740 25739877 -92122750 - MIR SINE MIR -70 192 48 1724 174 3 7 chr9 25740892 25741174 -92121453 + AluJb SINE Alu 2 282 -30 300 53 0 0 chr9 25741178 25741216 -92121411 + (TC)n Simple_repeat Simple_repeat 1 38 0 193 308 68 43 chr9 25741237 25741354 -92121273 + MIR SINE MIR 102 221 -41 597 279 19 0 chr9 25741362 25741516 -92121111 - MIR SINE MIR -21 241 85 920 221 211 33 chr9 25741516 25741847 -92120780 + MSTD LTR MaLR 1 390 -6 216 358 0 0 chr9 25741849 25741916 -92120711 - MIR SINE MIR -183 79 13 1704 192 7 0 chr9 25743206 25743498 -92119129 + AluJo SINE Alu 2 295 -17 323 351 85 6 chr9 25743655 25743820 -92118807 - MER5B DNA MER1_type 0 178 1 183 298 53 0 chr9 25743831 25743888 -92118739 + MER5B DNA MER1_type 119 178 0 203 225 0 0 chr9 25744244 25744284 -92118343 - L2 LINE L2 -17 3255 3216 868 262 37 12 chr9 25744312 25744556 -92118071 - MIR SINE MIR 0 262 13 7125 50 7 0 chr9 25746271 25747153 -92115474 + L1PA7 LINE L1 5259 6146 -8 207 0 0 0 chr9 25748363 25748386 -92114241 + (T)n Simple_repeat Simple_repeat 1 23 0 255 103 0 0 chr9 25749822 25749841 -92112786 + (TG)n Simple_repeat Simple_repeat 1 58 0 255 103 0 0 chr9 25749841 25749880 -92112747 + (TG)n Simple_repeat Simple_repeat 2 40 0 25 51 0 0 chr9 25749976 25750015 -92112612 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr9 25752825 25752847 -92109780 + AT_rich Low_complexity Low_complexity 1 22 0 195 184 41 20 chr9 25753440 25753489 -92109138 - L2 LINE L2 0 3313 3264 281 270 212 16 chr9 25753707 25753896 -92108731 + MIR SINE MIR 35 260 -2 1840 174 33 30 chr9 25754824 25755187 -92107440 - THE1B LTR MaLR 0 364 1 10985 108 12 10 chr9 25755187 25755495 -92107132 - THE1B-int LTR MaLR 0 1580 1274 2822 3 0 0 chr9 25755495 25755799 -92106828 - AluYa5 SINE Alu -7 304 1 10985 108 12 10 chr9 25755799 25757067 -92105560 - THE1B-int LTR MaLR -306 1274 1 1835 158 38 49 chr9 25757067 25757435 -92105192 - THE1B LTR MaLR 0 364 1 1552 209 18 4 chr9 25757805 25758083 -92104544 - AluJb SINE Alu -30 282 1 222 329 161 7 chr9 25758142 25758285 -92104342 - MIR SINE MIR -49 213 49 21 0 0 0 chr9 25759074 25759095 -92103532 + AT_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chr9 25759148 25759175 -92103452 + (TA)n Simple_repeat Simple_repeat 2 28 0 294 307 68 0 chr9 25759251 25759339 -92103288 - L2 LINE L2 -26 3246 3153 468 280 153 11 chr9 25759393 25759582 -92103045 + MIR SINE MIR 46 261 -1 374 385 52 38 chr9 25759934 25760355 -92102272 - L2 LINE L2 -527 2787 2361 3523 171 52 16 chr9 25760525 25761145 -92101482 + L1MA3 LINE L1 18 659 -6906 12743 162 13 9 chr9 25761153 25763282 -92099345 + L1MA3 LINE L1 805 2941 -4624 17286 194 60 8 chr9 25763311 25769894 -92092733 - L1P4 LINE L1 -696 6910 7 1452 204 42 7 chr9 25769893 25770299 -92092328 + L1MA3 LINE L1 4305 4724 -2841 * 5897 144 16 44 chr9 25770309 25771707 -92090920 + L1MA3 LINE L1 6380 7724 0 2757 123 84 71 chr9 25772231 25772455 -92090172 - MER4A LTR ERV1 0 600 381 2481 66 0 0 chr9 25772455 25772756 -92089871 + AluY SINE Alu 1 301 -10 2757 123 84 71 chr9 25772756 25773123 -92089504 - MER4A LTR ERV1 -219 381 1 191 342 72 18 chr9 25773561 25773672 -92088955 - MIR SINE MIR -127 135 19 203 280 0 0 chr9 25773730 25773780 -92088847 - L3 LINE CR1 -254 1323 1274 295 246 30 46 chr9 25773829 25773944 -92088683 - MER101 LTR ERV1 -14 556 341 1044 174 119 0 chr9 25774103 25774304 -92088323 - MER101B LTR ERV1 -342 228 4 586 282 74 10 chr9 25774311 25774513 -92088114 - LTR49-int LTR ERV1 -1023 7097 6883 1916 175 26 17 chr9 25774691 25775113 -92087514 - LTR49-int LTR ERV1 -1830 4501 4076 304 140 60 70 chr9 25775126 25775226 -92087401 - LTR49-int LTR ERV1 -2369 2567 2469 * 1558 208 77 42 chr9 25775217 25775906 -92086721 - LTR49-int LTR ERV1 -2554 2569 1857 276 169 0 0 chr9 25775901 25775960 -92086667 - LTR49-int LTR ERV1 -3870 2888 2830 * 437 181 39 216 chr9 25776083 25776315 -92086312 - LTR49-int LTR ERV1 -2882 3449 3259 1065 193 69 43 chr9 25776363 25776896 -92085731 - LTR49-int LTR ERV1 -3059 3272 1211 601 250 59 7 chr9 25776896 25777048 -92085579 - MER34C LTR ERV1 -181 404 245 535 184 28 127 chr9 25777050 25777262 -92085365 - LTR49-int LTR ERV1 -4067 1056 866 192 77 0 0 chr9 25777277 25777303 -92085324 + (CAA)n Simple_repeat Simple_repeat 2 27 0 831 194 9 13 chr9 25777389 25777562 -92085065 - LTR49-int LTR ERV1 -2790 2090 1380 2322 198 52 25 chr9 25777672 25778488 -92084139 - LTR49-int LTR ERV1 -3268 1612 516 1860 191 19 25 chr9 25778509 25778939 -92083688 - LTR49-int LTR ERV1 -4617 1329 1 565 217 14 14 chr9 25778941 25779079 -92083548 - LTR49 LTR ERV1 0 595 458 337 222 13 52 chr9 25779997 25780115 -92082512 - MER101B LTR ERV1 -1 538 361 1262 178 13 13 chr9 25780287 25780517 -92082110 - MER101B LTR ERV1 -340 230 1 257 271 0 34 chr9 25780874 25780933 -92081694 - MER2 DNA MER2_type 0 345 289 2296 183 23 72 chr9 25780933 25781533 -92081094 - L1MB7 LINE L1 -87 6097 5527 231 167 0 0 chr9 25781642 25781684 -92080943 + (TG)n Simple_repeat Simple_repeat 1 42 0 1513 191 9 38 chr9 25782354 25782673 -92079954 - AluJo SINE Alu -2 310 1 198 0 0 0 chr9 25833225 25833247 -92029380 + (T)n Simple_repeat Simple_repeat 1 22 0 28 0 0 0 chr9 25834233 25834261 -92028366 + AT_rich Low_complexity Low_complexity 1 28 0 1365 206 39 32 chr9 25834404 25834714 -92027913 - AluJb SINE Alu 0 312 1 2137 121 3 13 chr9 25834735 25835042 -92027585 - AluSx SINE Alu -8 304 1 242 128 26 0 chr9 25835655 25835694 -92026933 + L2 LINE L2 3263 3302 -11 516 297 88 74 chr9 25836589 25837091 -92025536 + HAL1 LINE L1 4 512 -1995 1606 251 142 57 chr9 25837259 25838134 -92024493 + HAL1 LINE L1 750 1698 -809 379 328 128 10 chr9 25838336 25838531 -92024096 - L3b LINE CR1 -53 1530 1313 218 191 0 0 chr9 25838584 25838626 -92024001 + CT-rich Low_complexity Low_complexity 2 43 0 795 11 0 0 chr9 25838691 25838783 -92023844 - L1PA3 LINE L1 -3 6152 6061 27 87 0 0 chr9 25839223 25839292 -92023335 + AT_rich Low_complexity Low_complexity 1 69 0 234 220 0 0 chr9 25841066 25841125 -92021502 + (TA)n Simple_repeat Simple_repeat 2 60 0 431 241 56 9 chr9 25841267 25841375 -92021252 - MIR SINE MIR -103 159 47 311 305 66 13 chr9 25843034 25843185 -92019442 - L2 LINE L2 -106 3207 3049 400 306 65 32 chr9 25844608 25844794 -92017833 - MIR SINE MIR -1 261 70 22 0 0 0 chr9 25845113 25845135 -92017492 + AT_rich Low_complexity Low_complexity 1 22 0 372 254 113 0 chr9 25845831 25845847 -92016780 - L1MA10 LINE L1 -7 6327 6312 1082 224 68 60 chr9 25845847 25846122 -92016505 - L1ME1 LINE L1 -14 6152 5870 1916 173 0 0 chr9 25846122 25846417 -92016210 + AluSx SINE Alu 2 296 -16 1082 224 68 60 chr9 25846417 25846609 -92016018 - L1ME1 LINE L1 -296 5870 5681 2315 128 47 11 chr9 25846654 25847014 -92015613 + THE1C LTR MaLR 3 375 0 9434 138 32 14 chr9 25847014 25848563 -92014064 + THE1C-int LTR MaLR 1 1577 -3 2008 145 56 11 chr9 25848567 25848925 -92013702 + THE1C LTR MaLR 2 375 0 829 96 0 0 chr9 25850705 25850820 -92011807 - AluSc SINE Alu -19 290 176 230 185 19 0 chr9 25850820 25850874 -92011753 + (CA)n Simple_repeat Simple_repeat 2 56 0 23 0 0 0 chr9 25851369 25851392 -92011235 + AT_rich Low_complexity Low_complexity 1 23 0 229 291 0 0 chr9 25851579 25851634 -92010993 - MIR3 SINE MIR -54 154 100 202 146 24 0 chr9 25852227 25852268 -92010359 + (TA)n Simple_repeat Simple_repeat 2 43 0 295 284 110 40 chr9 25852276 25852466 -92010161 - MIR SINE MIR -57 205 4 559 303 194 46 chr9 25854198 25854565 -92008062 + L2 LINE L2 2831 3251 -62 185 283 50 17 chr9 25854707 25854767 -92007860 - MIR SINE MIR -95 167 106 3372 192 17 10 chr9 25854767 25855459 -92007168 + L1PB4 LINE L1 5458 6154 -2 22 35 0 0 chr9 25855537 25855566 -92007061 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr9 25855832 25855855 -92006772 + AT_rich Low_complexity Low_complexity 1 23 0 1763 209 64 11 chr9 25856238 25856674 -92005953 - MER65C LTR ERV1 0 461 3 350 202 0 11 chr9 25859635 25859724 -92002903 + CT-rich Low_complexity Low_complexity 4 91 0 19400 48 14 1 chr9 25860618 25863102 -91999525 - L1P LINE L1 -1946 4200 1685 1351 37 0 0 chr9 25863101 25863264 -91999363 + L1P LINE L1 4196 4358 -1788 * 209 361 71 59 chr9 25863426 25863664 -91998963 + MIR SINE MIR 1 241 -21 22 0 0 0 chr9 25863804 25863826 -91998801 + AT_rich Low_complexity Low_complexity 1 22 0 185 350 41 0 chr9 25864698 25864795 -91997832 + L3 LINE CR1 304 404 -1173 622 192 0 0 chr9 25865183 25865287 -91997340 + MER33 DNA MER1_type 6 109 -215 656 185 39 0 chr9 25866588 25866718 -91995909 + MER3 DNA MER1_type 40 127 -82 1370 172 89 11 chr9 25866720 25867068 -91995559 + MER3 DNA MER1_type 2238 2612 0 617 225 0 21 chr9 25867361 25867503 -91995124 - FLAM_C SINE Alu -4 139 1 23 33 0 0 chr9 25867503 25867533 -91995094 + AT_rich Low_complexity Low_complexity 1 30 0 332 257 43 21 chr9 25867857 25867997 -91994630 - L1ME4a LINE L1 -5 6116 5974 223 295 67 57 chr9 25869397 25869502 -91993125 - L2 LINE L2 -5 3308 3203 201 227 0 23 chr9 25869598 25869642 -91992985 - L2 LINE L2 -212 3060 3018 192 372 60 70 chr9 25869632 25870046 -91992581 - L2 LINE L2 -17 3255 2846 * 324 333 0 9 chr9 25870474 25870582 -91992045 + MIR SINE MIR 50 156 -106 389 347 91 56 chr9 25870668 25871207 -91991420 - L2 LINE L2 -955 2359 1802 549 72 48 0 chr9 25871401 25871484 -91991143 + AluSg SINE Alu 1 87 -223 447 92 0 0 chr9 25871852 25871917 -91990710 + (CA)n Simple_repeat Simple_repeat 2 66 0 4463 203 26 8 chr9 25872488 25873759 -91988868 - L1PB1 LINE L1 -655 5496 4200 4310 110 14 3 chr9 25873746 25874393 -91988234 + L1PB1 LINE L1 5497 6150 -1 2701 3 0 0 chr9 25875013 25875307 -91987320 - AluYa5 SINE Alu -17 294 1 761 211 0 0 chr9 25875310 25875452 -91987175 - FLAM_C SINE Alu -1 142 1 27 29 0 0 chr9 25875655 25875689 -91986938 + AT_rich Low_complexity Low_complexity 1 34 0 1985 128 10 0 chr9 25875837 25876126 -91986501 - AluSq SINE Alu -21 292 1 225 159 0 0 chr9 25876158 25876202 -91986425 + (TA)n Simple_repeat Simple_repeat 2 45 0 282 308 8 15 chr9 25876256 25876389 -91986238 - L1M4 LINE L1 -3163 2983 2852 563 274 79 19 chr9 25876693 25876908 -91985719 - MLT1J2 LTR MaLR -220 230 3 280 312 100 4 chr9 25877185 25877416 -91985211 - L1M4 LINE L1 -3759 2387 2135 346 350 106 18 chr9 25878687 25879244 -91983383 + L1MC4a LINE L1 5303 5908 -1900 204 123 77 62 chr9 25879447 25879512 -91983115 + A-rich Low_complexity Low_complexity 5 70 0 218 306 24 47 chr9 25879941 25880026 -91982601 + MIR SINE MIR 6 88 -174 382 253 157 30 chr9 25880151 25880317 -91982310 + MIR SINE MIR 50 236 -26 233 383 16 8 chr9 25880686 25880814 -91981813 + MIR3 SINE MIR 77 205 -3 306 0 0 0 chr9 25881109 25881143 -91981484 + (T)n Simple_repeat Simple_repeat 1 34 0 216 0 0 0 chr9 25884038 25884062 -91978565 + (TTCC)n Simple_repeat Simple_repeat 3 26 0 2030 117 7 0 chr9 25884162 25884517 -91978110 - AluSp SINE Alu 0 359 3 333 362 0 16 chr9 25888409 25888536 -91974091 - MIR SINE MIR -65 143 19 372 342 61 0 chr9 25888937 25889133 -91973494 - MIR SINE MIR 0 262 55 25 0 0 0 chr9 25889982 25890007 -91972620 + AT_rich Low_complexity Low_complexity 1 25 0 279 250 0 0 chr9 25891468 25891520 -91971107 - L2 LINE L2 -7 3306 3255 345 47 0 0 chr9 25891653 25891696 -91970931 + (CA)n Simple_repeat Simple_repeat 2 44 0 23 0 0 0 chr9 25891720 25891743 -91970884 + AT_rich Low_complexity Low_complexity 1 23 0 390 209 22 33 chr9 25892111 25892202 -91970425 - MER63 DNA MER1_type -82 754 39 492 260 31 52 chr9 25893799 25893991 -91968636 + MIR SINE MIR 75 262 0 663 214 128 5 chr9 25894172 25894359 -91968268 + MER6B DNA MER2_type 1 210 0 206 284 87 43 chr9 25894415 25894669 -91967958 + L2 LINE L2 1917 2181 -1133 315 311 67 28 chr9 25896001 25896181 -91966446 - MIR SINE MIR -73 189 3 550 349 133 26 chr9 25896651 25897330 -91965297 - L2 LINE L2 0 3272 2527 456 264 18 42 chr9 25897600 25897767 -91964860 + MIR SINE MIR 2 164 -98 994 350 63 35 chr9 25897821 25898453 -91964174 - L2 LINE L2 -959 2355 1706 380 204 30 106 chr9 25899018 25899150 -91963477 - L2 LINE L2 -17 3296 3175 292 320 195 30 chr9 25900226 25900426 -91962201 + MIR SINE MIR 3 235 -27 192 214 54 54 chr9 25900392 25900448 -91962179 + L2 LINE L2 3207 3262 -10 * 2361 156 36 5 chr9 25900997 25901439 -91961188 - L1PA13 LINE L1 -2 6161 5706 492 299 76 11 chr9 25903356 25903540 -91959087 - L2 LINE L2 0 3313 3118 617 256 12 23 chr9 25903935 25904107 -91958520 + MER63A DNA MER1_type 41 210 0 1751 249 48 38 chr9 25904385 25904967 -91957660 + MLT1G LTR MaLR 1 588 -2 366 259 80 82 chr9 25905524 25905853 -91956774 - MLT1H LTR MaLR -4 545 125 2771 280 76 41 chr9 25906552 25908866 -91953761 - L1ME2 LINE L1 0 6233 3818 2461 54 0 0 chr9 25908867 25909163 -91953464 - AluY SINE Alu -14 297 2 1287 79 69 0 chr9 25909183 25909372 -91953255 - L1PA11 LINE L1 -2 6172 5971 322 311 231 11 chr9 25909372 25909456 -91953171 - L1ME2 LINE L1 -4419 1977 1913 1892 170 25 22 chr9 25909456 25909820 -91952807 - MLT1A1 LTR MaLR 0 365 1 322 311 231 11 chr9 25909820 25909999 -91952628 - L1ME2 LINE L1 -4483 1913 1656 337 336 124 12 chr9 25910037 25910278 -91952349 - L1ME2 LINE L1 -5257 948 681 221 290 65 19 chr9 25911564 25911671 -91950956 + MIR SINE MIR 96 207 -55 3086 45 0 0 chr9 25911849 25912226 -91950401 - L1PA5 LINE L1 -8 6146 5770 42239 36 21 1 chr9 25912238 25918266 -91944361 - L1PA2 LINE L1 0 6155 3 1344 55 2 3 chr9 25918266 25918445 -91944182 - L1PA5 LINE L1 -371 5783 5607 208 300 17 0 chr9 25921942 25922002 -91940625 + MIR SINE MIR 87 147 -61 3766 153 27 2 chr9 25922564 25923196 -91939431 - Tigger1 DNA MER2_type 0 2418 1771 8822 151 39 10 chr9 25923196 25924779 -91937848 - Tigger1 DNA MER2_type -788 1630 2 662 204 0 0 chr9 25925808 25925916 -91936711 + Tigger3(Golem) DNA MER2_type 2 109 -2920 * 3794 149 67 12 chr9 25925915 25926661 -91935966 + Tigger3(Golem) DNA MER2_type 2241 3027 -2 213 39 0 0 chr9 25926942 25926968 -91935659 + (TA)n Simple_repeat Simple_repeat 1 26 0 382 288 112 36 chr9 25927103 25927686 -91934941 + L1M4 LINE L1 2884 3510 -2636 594 287 162 14 chr9 25927731 25928288 -91934339 + L1M4 LINE L1 4326 4964 -1182 24 0 0 0 chr9 25928824 25928848 -91933779 + AT_rich Low_complexity Low_complexity 1 24 0 210 282 153 24 chr9 25930428 25930552 -91932075 + MER5B DNA MER1_type 38 177 -1 24 53 0 0 chr9 25931020 25931058 -91931569 + AT_rich Low_complexity Low_complexity 1 38 0 214 309 0 0 chr9 25931373 25931428 -91931199 + (TA)n Simple_repeat Simple_repeat 1 55 0 249 401 18 6 chr9 25932124 25932291 -91930336 - L2 LINE L2 -1268 2046 1878 279 79 0 0 chr9 25932869 25932907 -91929720 + (T)n Simple_repeat Simple_repeat 1 38 0 267 31 0 0 chr9 25933059 25933091 -91929536 + (TTTG)n Simple_repeat Simple_repeat 3 34 0 1930 122 0 0 chr9 25933104 25933375 -91929252 - AluSg SINE Alu -39 271 1 364 311 110 28 chr9 25933789 25934107 -91928520 - L1MC4 LINE L1 -369 7673 7330 306 0 0 0 chr9 25934199 25934233 -91928394 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 264 242 24 40 chr9 25934255 25934379 -91928248 - L1MC5 LINE L1 -738 7223 7102 26 30 0 0 chr9 25935087 25935120 -91927507 + AT_rich Low_complexity Low_complexity 1 33 0 535 280 106 32 chr9 25935614 25935832 -91926795 - L2 LINE L2 -639 2675 2442 27 100 0 0 chr9 25936064 25936154 -91926473 + AT_rich Low_complexity Low_complexity 1 90 0 358 311 77 26 chr9 25936163 25936436 -91926191 - HAL1 LINE L1 -211 2296 2010 242 256 188 8 chr9 25936556 25936646 -91925981 - HAL1 LINE L1 -709 1798 1726 732 232 57 0 chr9 25936646 25936823 -91925804 - MER5A DNA MER1_type -1 188 2 242 256 188 8 chr9 25936823 25936865 -91925762 - HAL1 LINE L1 -781 1726 1642 189 107 0 0 chr9 25937131 25937159 -91925468 + (CAA)n Simple_repeat Simple_repeat 1 28 0 311 273 83 75 chr9 25937415 25937763 -91924864 - HAL1 LINE L1 -1045 1462 1112 210 71 0 0 chr9 25938156 25938184 -91924443 + (T)n Simple_repeat Simple_repeat 1 28 0 230 315 25 74 chr9 25938271 25938433 -91924194 - HAL1 LINE L1 -1871 636 483 448 292 17 17 chr9 25938724 25938844 -91923783 + L2 LINE L2 3150 3269 -3 342 0 0 0 chr9 25939758 25939796 -91922831 + (TG)n Simple_repeat Simple_repeat 2 39 0 446 303 21 7 chr9 25940589 25940734 -91921893 + L2 LINE L2 3167 3313 0 236 196 0 0 chr9 25941216 25941262 -91921365 + (CATA)n Simple_repeat Simple_repeat 1 46 0 22 35 0 0 chr9 25942188 25942217 -91920410 + AT_rich Low_complexity Low_complexity 1 29 0 366 274 183 11 chr9 25942934 25943109 -91919518 + MIR SINE MIR 58 262 0 261 313 21 0 chr9 25944258 25944354 -91918273 - L3 LINE CR1 -573 1004 907 209 244 0 24 chr9 25946650 25946732 -91915895 + CT-rich Low_complexity Low_complexity 3 82 0 2043 84 9 75 chr9 25946856 25947176 -91915451 - AluSc SINE Alu -10 299 1 267 259 0 0 chr9 25947730 25947788 -91914839 + (TG)n Simple_repeat Simple_repeat 1 58 0 247 352 22 0 chr9 25948244 25948335 -91914292 + MIR3 SINE MIR 67 159 -49 223 229 21 0 chr9 25948552 25948600 -91914027 + MIR3 SINE MIR 150 198 -10 320 346 149 5 chr9 25950240 25950428 -91912199 + MIR SINE MIR 13 227 -35 876 222 9 47 chr9 25950525 25950737 -91911890 + MER20 DNA MER1_type 16 219 0 27 73 0 0 chr9 25954393 25954448 -91908179 + AT_rich Low_complexity Low_complexity 1 55 0 311 351 48 25 chr9 25955145 25955356 -91907271 - MIR SINE MIR -39 223 5 507 318 91 9 chr9 25955938 25956158 -91906469 - MIR SINE MIR -6 256 19 3305 180 109 9 chr9 25956414 25957165 -91905462 - LTR1B LTR ERV1 0 826 1 32 67 0 0 chr9 25957173 25957233 -91905394 + AT_rich Low_complexity Low_complexity 1 60 0 216 333 145 13 chr9 25958925 25959084 -91903543 - MIR SINE MIR -19 243 64 21 57 0 0 chr9 25959813 25959848 -91902779 + AT_rich Low_complexity Low_complexity 1 35 0 218 327 0 0 chr9 25960966 25961021 -91901606 + MIR SINE MIR 40 94 -114 1376 306 63 39 chr9 25961739 25962379 -91900248 + L2 LINE L2 2035 2690 -624 685 278 64 0 chr9 25962379 25962552 -91900075 - MER5A DNA MER1_type -2 187 4 450 299 162 0 chr9 25962571 25962725 -91899902 + MER5A DNA MER1_type 9 187 -2 853 288 65 64 chr9 25962770 25963388 -91899239 + L2 LINE L2 2695 3313 0 929 179 0 12 chr9 25964648 25964810 -91897817 + FRAM SINE Alu 6 165 -11 296 339 0 27 chr9 25965449 25965561 -91897066 + MIR3 SINE MIR 88 196 -12 5946 101 21 2 chr9 25965790 25967445 -91895182 + L1PA14 LINE L1 4469 6159 -2 5347 186 68 17 chr9 25969226 25971356 -91891271 - L1MA9 LINE L1 -5 6307 4061 3514 221 50 14 chr9 25971353 25972329 -91890298 - L1MA9 LINE L1 -2315 3831 2821 * 253 117 83 17 chr9 25972338 25972398 -91890229 - L1PA8 LINE L1 0 6172 6109 * 16022 178 12 6 chr9 25972385 25975184 -91887443 - L1PA10 LINE L1 -80 6403 3360 1723 152 56 0 chr9 25975184 25975454 -91887173 - AluSg SINE Alu -23 287 3 16022 178 12 6 chr9 25975454 25976445 -91886182 - L1PA10 LINE L1 -3123 3360 2376 * 41239 59 6 7 chr9 25976440 25982601 -91880026 - L1PA4 LINE L1 0 6155 1 4440 222 19 54 chr9 25982602 25984261 -91878366 - L1PA10 LINE L1 -4070 2391 771 2522 195 46 4 chr9 25984266 25984747 -91877880 - L1PA10 LINE L1 -5372 503 3 1918 242 45 44 chr9 25984748 25985773 -91876854 - L1M4c LINE L1 -3315 2719 1677 408 287 11 0 chr9 25985848 25985935 -91876692 - Tigger7 DNA MER2_type 0 2587 2500 1799 113 25 3 chr9 25985935 25986217 -91876410 + MER57-int LTR ERV1 4521 4808 -2729 6913 221 65 20 chr9 25986230 25987780 -91874847 + MER52A LTR ERV1 6 1755 0 601 135 95 40 chr9 25987798 25987946 -91874681 - Tigger7 DNA MER2_type -104 2387 2232 297 254 0 0 chr9 25987944 25987999 -91874628 - Tigger7 DNA MER2_type -678 55 1 * 2651 267 73 17 chr9 25987999 25989478 -91873149 - L1M4c LINE L1 -4523 1513 322 1940 309 92 10 chr9 25989484 25990189 -91872438 - L1 LINE L1 -5181 1122 360 200 94 0 31 chr9 25990200 25990232 -91872395 + (CTTTA)n Simple_repeat Simple_repeat 3 33 0 232 274 162 17 chr9 25990691 25990808 -91871819 - MIR SINE MIR -17 245 112 1669 117 17 0 chr9 25990818 25991049 -91871578 + AluSq SINE Alu 1 235 -78 222 62 0 0 chr9 25991069 25991101 -91871526 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 2501 253 167 25 chr9 25991843 25993284 -91869343 - L1M4 LINE L1 -873 5342 3697 5813 26 4 0 chr9 25993286 25993970 -91868657 + L1PA4 LINE L1 5469 6155 0 4118 271 78 35 chr9 25993995 25994116 -91868511 - L1MEc LINE L1 -3477 2738 2624 1448 221 54 20 chr9 25994116 25994469 -91868158 - MLT1A1 LTR MaLR 0 365 1 4118 271 78 35 chr9 25994469 25994613 -91868014 - L1MEc LINE L1 -3591 2624 2488 771 264 93 35 chr9 25994613 25994958 -91867669 - MLT1A1 LTR MaLR 0 365 1 4118 271 78 35 chr9 25994958 25995524 -91867103 - L1MEc LINE L1 -3727 2488 1948 2082 106 7 17 chr9 25995524 25995817 -91866810 + AluSg SINE Alu 1 290 -20 4118 271 78 35 chr9 25995817 25997386 -91865241 - L1MEc LINE L1 -4267 1948 254 1757 203 6 103 chr9 25997386 25997893 -91864734 - LTR22A LTR ERVK 0 458 1 4118 271 78 35 chr9 25997893 25998127 -91864500 - L1MEc LINE L1 -5961 254 31 3129 209 34 17 chr9 25998279 25999036 -91863591 - L1MB8 LINE L1 0 6178 5409 392 263 101 86 chr9 25999310 25999519 -91863108 + MER58C DNA MER1_type 2 213 -2 41326 61 3 7 chr9 26000538 26006718 -91855909 - L1PA4 LINE L1 -3 6152 1 1949 146 7 7 chr9 26006721 26007022 -91855605 - AluSx SINE Alu -11 301 1 2280 102 3 0 chr9 26008159 26008481 -91854146 - AluSx SINE Alu 0 323 1 435 257 14 36 chr9 26009047 26009187 -91853440 + L2 LINE L2 2651 2787 -527 503 285 119 22 chr9 26009197 26009516 -91853111 - MLT1I LTR MaLR 0 409 60 578 329 126 4 chr9 26009568 26009799 -91852828 + L2 LINE L2 2812 3070 -243 290 164 73 0 chr9 26009813 26009868 -91852759 - MER58 DNA MER1_type -2201 219 161 385 287 28 19 chr9 26009941 26010049 -91852578 + L2 LINE L2 3193 3301 -12 360 320 116 7 chr9 26010154 26010301 -91852326 - MIR SINE MIR -19 243 81 462 227 296 0 chr9 26010526 26010658 -91851969 - MER5B DNA MER1_type -5 173 3 2921 100 37 2 chr9 26012699 26013128 -91849499 - MLT2A1 LTR ERVL 0 444 1 792 285 72 49 chr9 26013260 26013607 -91849020 + LTR33 LTR ERVL 1 355 -166 336 170 0 0 chr9 26013606 26013659 -91848968 - Alu SINE Alu -249 53 1 * 1456 195 18 28 chr9 26013920 26014202 -91848425 + AluJo SINE Alu 1 279 -33 2691 58 17 0 chr9 26014202 26014547 -91848080 + L1PA7 LINE L1 5804 6154 0 288 0 0 0 chr9 26014646 26014678 -91847949 + (CA)n Simple_repeat Simple_repeat 2 33 0 214 178 0 0 chr9 26015346 26015391 -91847236 + T-rich Low_complexity Low_complexity 1 45 0 2155 100 10 3 chr9 26016182 26016492 -91846135 - AluSq SINE Alu -1 312 1 712 217 11 5 chr9 26016582 26016766 -91845861 - L1MB2 LINE L1 0 6171 5987 2198 113 0 0 chr9 26017092 26017394 -91845233 - AluSc SINE Alu -7 302 1 213 184 20 20 chr9 26017514 26017563 -91845064 + (CATATA)n Simple_repeat Simple_repeat 2 50 0 307 278 0 46 chr9 26017745 26017853 -91844774 + MIR SINE MIR 159 261 -1 825 214 10 36 chr9 26018820 26019012 -91843615 - MER5A DNA MER1_type -1 188 2 399 206 0 0 chr9 26019377 26019450 -91843177 + MER6 DNA MER2_type 143 215 -390 23 86 0 0 chr9 26019806 26019864 -91842763 + AT_rich Low_complexity Low_complexity 1 58 0 21 57 0 0 chr9 26021002 26021037 -91841590 + AT_rich Low_complexity Low_complexity 1 35 0 360 333 81 24 chr9 26021632 26021842 -91840785 - LTR16A LTR ERVL -6 444 223 539 269 118 5 chr9 26021851 26022037 -91840590 - HERV16 LTR ERVL -3062 1934 1728 199 343 7 68 chr9 26022367 26022513 -91840114 + MIR SINE MIR 86 222 -40 2183 120 0 0 chr9 26023372 26023673 -91838954 - AluSx SINE Alu -11 301 1 2226 87 0 3 chr9 26025270 26025570 -91837057 + AluSg SINE Alu 1 299 -11 21 36 0 0 chr9 26025735 26025763 -91836864 + AT_rich Low_complexity Low_complexity 1 28 0 1279 259 141 13 chr9 26025841 26027007 -91835620 + L1MD2 LINE L1 1692 2973 -3242 341 316 14 73 chr9 26027011 26027229 -91835398 + Zaphod DNA AcHobo 55 259 -3772 588 274 75 24 chr9 26027335 26027547 -91835080 + Zaphod DNA AcHobo 438 660 -3371 260 264 13 71 chr9 26027591 26027746 -91834881 + Zaphod DNA AcHobo 1868 2013 -2018 2382 230 60 33 chr9 26027768 26028689 -91833938 + Zaphod DNA AcHobo 2454 3399 -632 437 247 184 47 chr9 26028737 26029039 -91833588 + Zaphod DNA AcHobo 3614 3976 -55 1409 177 47 13 chr9 26029039 26029356 -91833271 - L1MA9 LINE L1 -10 6302 5975 437 247 184 47 chr9 26029356 26029417 -91833210 + Zaphod DNA AcHobo 3976 4027 -4 182 266 89 13 chr9 26030099 26030178 -91832449 - L2 LINE L2 -40 3273 3189 22 35 0 0 chr9 26030374 26030403 -91832224 + AT_rich Low_complexity Low_complexity 1 29 0 389 297 48 21 chr9 26031121 26031266 -91831361 + MIR SINE MIR 114 262 0 24 53 0 0 chr9 26032059 26032097 -91830530 + AT_rich Low_complexity Low_complexity 1 38 0 189 147 0 0 chr9 26032104 26032138 -91830489 + (TCCA)n Simple_repeat Simple_repeat 3 36 0 387 60 0 0 chr9 26032163 26032213 -91830414 + (GA)n Simple_repeat Simple_repeat 2 51 0 2744 265 73 23 chr9 26033104 26034453 -91828174 + L1MD2 LINE L1 4086 5505 -730 1046 220 161 24 chr9 26034449 26034858 -91827769 + L1MD2 LINE L1 5710 6174 -254 * 5802 98 31 2 chr9 26034872 26036142 -91826485 + L1PA13 LINE L1 4846 6144 -19 227 317 117 39 chr9 26036976 26037181 -91825446 + MLT1K LTR MaLR 313 533 -55 25 0 0 0 chr9 26038403 26038428 -91824199 + AT_rich Low_complexity Low_complexity 1 25 0 32 67 0 0 chr9 26038851 26038911 -91823716 + AT_rich Low_complexity Low_complexity 1 60 0 22 70 0 0 chr9 26039745 26039788 -91822839 + AT_rich Low_complexity Low_complexity 1 43 0 4804 220 21 53 chr9 26040324 26041549 -91821078 + L1MB8 LINE L1 11 1196 -5663 2463 224 59 5 chr9 26041683 26042696 -91819931 + L1MB8 LINE L1 5658 6729 -260 * 4273 51 0 0 chr9 26042693 26043238 -91819389 - L1P LINE L1 -3677 2469 1925 730 264 34 22 chr9 26043234 26043503 -91819124 + L1MB8 LINE L1 6718 6989 0 * 394 244 101 71 chr9 26043554 26043605 -91819022 + MLT1H LTR MaLR 377 425 -124 1873 115 7 27 chr9 26043605 26043901 -91818726 + AluY SINE Alu 1 290 -21 394 244 101 71 chr9 26043901 26044017 -91818610 + MLT1H LTR MaLR 425 549 0 556 318 20 40 chr9 26044077 26044329 -91818298 - MIR SINE MIR -14 248 2 287 218 90 8 chr9 26044335 26044468 -91818159 - L1ME4a LINE L1 -196 5925 5782 21 0 0 0 chr9 26044736 26044757 -91817870 + AT_rich Low_complexity Low_complexity 1 21 0 1116 259 63 71 chr9 26044963 26045580 -91817047 - L1MC4 LINE L1 -5 8037 7426 197 378 61 0 chr9 26047722 26047804 -91814823 - L2 LINE L2 -5 3267 3181 515 232 34 4 chr9 26048228 26048444 -91814183 + LTR37A LTR ERV1 110 412 -14 1537 81 0 19 chr9 26048540 26048751 -91813876 + AluY SINE Alu 92 298 -13 571 307 50 17 chr9 26049256 26049614 -91813013 - L1ME4a LINE L1 -216 5905 5536 1149 184 19 34 chr9 26051456 26051722 -91810905 - THE1C LTR MaLR -113 262 1 5192 135 6 10 chr9 26051722 26052529 -91810098 - THE1C-int LTR MaLR 0 1580 777 484 307 78 14 chr9 26053773 26053991 -91808636 + MIR SINE MIR 17 248 -14 218 175 0 0 chr9 26054021 26054061 -91808566 + (CCA)n Simple_repeat Simple_repeat 1 40 0 475 320 34 25 chr9 26054352 26054561 -91808066 - MIR SINE MIR -17 245 36 394 71 0 0 chr9 26054906 26054962 -91807665 - L1PB1 LINE L1 -3 6148 6093 371 97 16 0 chr9 26055037 26055099 -91807528 - L1PB1 LINE L1 -6 6145 6083 2530 86 11 0 chr9 26055173 26055524 -91807103 - L1PB1 LINE L1 -6 6145 5791 309 77 0 0 chr9 26055524 26055563 -91807064 + (TG)n Simple_repeat Simple_repeat 1 39 0 523 229 29 0 chr9 26055563 26055738 -91806889 + (TA)n Simple_repeat Simple_repeat 1 180 0 473 218 41 0 chr9 26055752 26055922 -91806705 + (TA)n Simple_repeat Simple_repeat 2 178 0 3487 167 15 7 chr9 26055931 26055942 -91806685 - L1PB1 LINE L1 -360 5791 5782 180 0 0 0 chr9 26055942 26055962 -91806665 + (CA)n Simple_repeat Simple_repeat 2 21 0 3487 167 15 7 chr9 26055962 26056982 -91805645 - L1PB1 LINE L1 -369 5782 4753 342 353 35 17 chr9 26058850 26059023 -91803604 - MIR3 SINE MIR -1 207 32 225 83 0 0 chr9 26061006 26061042 -91801585 + (CA)n Simple_repeat Simple_repeat 2 37 0 1133 245 116 48 chr9 26061327 26061566 -91801061 + Charlie2 DNA MER1_type 2061 2282 -580 2608 33 0 0 chr9 26061566 26061868 -91800759 + AluY SINE Alu 1 302 -9 1133 245 116 48 chr9 26061868 26062378 -91800249 + Charlie2 DNA MER1_type 2282 2861 -1 772 264 82 58 chr9 26062566 26062673 -91799954 + LTR16A LTR ERVL 113 216 -234 2032 125 63 34 chr9 26062673 26063024 -91799603 + THE1B LTR MaLR 1 361 -3 772 264 82 58 chr9 26063024 26063246 -91799381 + LTR16A LTR ERVL 216 450 0 381 276 12 0 chr9 26064838 26064936 -91797691 + MIR SINE MIR 50 147 -62 449 362 122 19 chr9 26064969 26065386 -91797241 - L2 LINE L2 -18 3295 2836 1194 244 95 65 chr9 26066017 26066054 -91796573 - LTR40a LTR ERVL 0 519 485 1483 234 42 18 chr9 26066054 26066435 -91796192 + MLT1B LTR MaLR 1 390 0 1194 244 95 65 chr9 26066435 26066456 -91796171 - LTR40a LTR ERVL -34 485 466 5350 67 56 7 chr9 26066456 26067186 -91795441 + MER4E LTR ERV1 1 766 0 1194 244 95 65 chr9 26067186 26067630 -91794997 - LTR40a LTR ERVL -53 466 1 21 57 0 0 chr9 26067775 26067810 -91794817 + AT_rich Low_complexity Low_complexity 1 35 0 2187 175 204 88 chr9 26068086 26068894 -91793733 - LTR28 LTR ERV1 0 1020 92 2188 109 0 3 chr9 26068894 26069196 -91793431 + AluSg1 SINE Alu 1 301 -8 2187 175 204 88 chr9 26069196 26069301 -91793326 - LTR28 LTR ERV1 -928 92 1 754 246 41 0 chr9 26070365 26070536 -91792091 + MER45A DNA AcHobo 1 178 0 30 89 0 0 chr9 26070766 26070845 -91791782 + AT_rich Low_complexity Low_complexity 1 79 0 24 32 0 0 chr9 26073735 26073766 -91788861 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr9 26074603 26074631 -91787996 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr9 26074695 26074725 -91787902 + AT_rich Low_complexity Low_complexity 1 30 0 2014 152 97 66 chr9 26075573 26076059 -91786568 + LTR1 LTR ERV1 28 528 -257 4512 128 91 83 chr9 26076059 26077615 -91785012 + pTR5 LTR ERV1 331 714 0 1562 146 43 4 chr9 26077615 26077869 -91784758 + LTR1 LTR ERV1 522 785 0 320 353 90 16 chr9 26078348 26078592 -91784035 - MIR SINE MIR 0 262 1 568 223 82 35 chr9 26079747 26080003 -91782624 - LTR37B LTR ERV1 -4 464 197 27 29 0 0 chr9 26080092 26080126 -91782501 + AT_rich Low_complexity Low_complexity 1 34 0 319 221 121 34 chr9 26080126 26080275 -91782352 - LTR37B LTR ERV1 -306 162 1 21 0 0 0 chr9 26080463 26080484 -91782143 + AT_rich Low_complexity Low_complexity 1 21 0 861 78 0 0 chr9 26081903 26082019 -91780608 + L1PA8 LINE L1 5800 5915 -257 2483 96 11 8 chr9 26082307 26082673 -91779954 + L1PA8 LINE L1 5800 6166 -6 189 0 0 0 chr9 26083279 26083300 -91779327 + (T)n Simple_repeat Simple_repeat 1 21 0 340 248 0 13 chr9 26084068 26084192 -91778435 - L1MCa LINE L1 -1339 6983 1995 28 29 0 0 chr9 26084321 26084356 -91778271 + AT_rich Low_complexity Low_complexity 1 35 0 246 310 112 36 chr9 26084366 26084724 -91777903 - L1MC/D LINE L1 -1893 5915 5531 30 0 0 0 chr9 26084911 26084941 -91777686 + AT_rich Low_complexity Low_complexity 1 30 0 253 352 0 0 chr9 26085151 26085242 -91777385 - MLT1K LTR MaLR -149 439 349 2013 130 33 3 chr9 26085958 26086258 -91776369 - THE1B LTR MaLR 0 364 56 714 55 0 0 chr9 26087328 26087419 -91775208 + (CAGAA)n Simple_repeat Simple_repeat 2 92 0 397 172 51 153 chr9 26087749 26087906 -91774721 + MLT1I LTR MaLR 14 154 -255 21 57 0 0 chr9 26088020 26088055 -91774572 + AT_rich Low_complexity Low_complexity 1 35 0 26 0 0 0 chr9 26088126 26088152 -91774475 + AT_rich Low_complexity Low_complexity 1 26 0 400 261 75 43 chr9 26088370 26088531 -91774096 + MLT1I LTR MaLR 244 409 0 23 54 0 0 chr9 26089018 26089055 -91773572 + AT_rich Low_complexity Low_complexity 1 37 0 27 0 0 0 chr9 26089126 26089153 -91773474 + AT_rich Low_complexity Low_complexity 1 27 0 185 320 48 75 chr9 26090625 26090772 -91771855 - MIR SINE MIR -28 234 92 765 298 42 4 chr9 26090798 26091036 -91771591 - MIR SINE MIR -6 256 10 191 336 154 25 chr9 26091766 26092046 -91770581 + L3 LINE CR1 956 1271 -306 741 286 77 4 chr9 26092063 26092297 -91770330 + MIR SINE MIR 12 262 0 294 328 23 35 chr9 26092318 26092489 -91770138 - L2 LINE L2 -2621 693 525 340 244 0 0 chr9 26092501 26092579 -91770048 + MER1B DNA MER1_type 44 121 -176 335 145 29 36 chr9 26093130 26093268 -91769359 + (TA)n Simple_repeat Simple_repeat 2 138 0 954 302 144 22 chr9 26094453 26094986 -91767641 - L2 LINE L2 -1001 2313 1716 1611 215 79 63 chr9 26095936 26096442 -91766185 - MER67D LTR ERV1 0 514 1 244 286 56 8 chr9 26096680 26096806 -91765821 + LTR67 LTR ERVL 410 541 -16 255 258 8 121 chr9 26097600 26097732 -91764895 + MIR SINE MIR 116 232 -30 981 325 117 15 chr9 26097950 26098786 -91763841 + L2 LINE L2 2370 3300 -13 186 43 0 0 chr9 26098786 26098809 -91763818 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 25 51 0 0 chr9 26098848 26098887 -91763740 + AT_rich Low_complexity Low_complexity 1 39 0 229 282 206 30 chr9 26099357 26099488 -91763139 + MIR SINE MIR 1 154 -108 191 189 19 0 chr9 26099579 26099632 -91762995 + (ATG)n Simple_repeat Simple_repeat 1 54 0 20446 105 28 0 chr9 26100637 26103375 -91759252 + L1PA7 LINE L1 2254 5042 -1112 2762 13 0 0 chr9 26103375 26103681 -91758946 + AluYb8 SINE Alu 2 307 -11 20446 105 28 0 chr9 26103681 26104820 -91757807 + L1PA7 LINE L1 5042 6148 -6 31 58 0 0 chr9 26105060 26105112 -91757515 + AT_rich Low_complexity Low_complexity 1 52 0 1256 225 121 17 chr9 26105829 26106184 -91756443 + MSTD LTR MaLR 1 392 -4 4805 182 33 46 chr9 26106518 26107910 -91754717 + L1MA10 LINE L1 4935 6312 -22 302 194 60 0 chr9 26108359 26108426 -91754201 - MER92C LTR ERV1 0 554 484 286 224 0 66 chr9 26108611 26108687 -91753940 - MER92C LTR ERV1 -483 71 1 1380 234 95 23 chr9 26109869 26110300 -91752327 - MLT1C LTR MaLR 0 467 6 21 0 0 0 chr9 26110656 26110677 -91751950 + AT_rich Low_complexity Low_complexity 1 21 0 1473 197 34 3 chr9 26110889 26111183 -91751444 + AluJo SINE Alu 1 303 -9 1473 202 56 43 chr9 26112377 26112838 -91749789 - MLT1C LTR MaLR 0 467 1 1517 137 105 43 chr9 26113124 26113475 -91749152 + THE1C LTR MaLR 3 375 0 468 279 8 85 chr9 26113793 26114051 -91748576 + L2 LINE L2 2904 3141 -172 22 0 0 0 chr9 26115929 26115951 -91746676 + AT_rich Low_complexity Low_complexity 1 22 0 276 111 0 0 chr9 26115958 26116003 -91746624 + (TA)n Simple_repeat Simple_repeat 2 46 0 21 0 0 0 chr9 26116346 26116367 -91746260 + AT_rich Low_complexity Low_complexity 1 21 0 383 318 24 0 chr9 26116647 26116773 -91745854 + MIR SINE MIR 102 230 -32 2065 175 62 40 chr9 26118680 26119093 -91743534 + L1MA4A LINE L1 5635 6062 -241 1915 157 3 3 chr9 26119093 26119399 -91743228 + AluSx SINE Alu 1 306 -6 2065 175 62 40 chr9 26119399 26119466 -91743161 + L1MA4A LINE L1 6062 6126 -177 265 233 0 17 chr9 26119564 26119624 -91743003 + MLT1H LTR MaLR 91 149 -400 312 300 50 0 chr9 26119675 26119775 -91742852 + MLT1H LTR MaLR 240 344 -205 425 241 123 37 chr9 26120557 26120719 -91741908 - MLT1K LTR MaLR -27 561 386 272 299 52 0 chr9 26120831 26120908 -91741719 - MLT1K LTR MaLR -423 165 85 538 259 67 10 chr9 26121816 26122009 -91740618 - MER3 DNA MER1_type 0 209 6 687 369 50 19 chr9 26122252 26122713 -91739914 + L1MEd LINE L1 279 753 -5366 3919 222 66 15 chr9 26122819 26124836 -91737791 + L1MB7 LINE L1 4047 6167 -17 251 264 49 62 chr9 26125136 26125280 -91737347 + L1MEd LINE L1 1101 1242 -4877 262 365 0 0 chr9 26125352 26125497 -91737130 + HAL1 LINE L1 1453 1597 -910 229 355 43 0 chr9 26127191 26127284 -91735343 - L2 LINE L2 -221 3051 2955 515 286 141 14 chr9 26128971 26129184 -91733443 + MLT1I LTR MaLR 1 240 -169 1869 129 45 55 chr9 26131196 26131575 -91731052 + THE1C LTR MaLR 1 375 0 24 0 0 0 chr9 26132908 26132932 -91729695 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr9 26133104 26133127 -91729500 + AT_rich Low_complexity Low_complexity 1 23 0 189 0 0 0 chr9 26134909 26134930 -91727697 + (A)n Simple_repeat Simple_repeat 1 21 0 702 127 51 0 chr9 26135611 26135729 -91726898 - AluSg/x SINE Alu -1 311 188 189 254 73 0 chr9 26136002 26136057 -91726570 + MIR3 SINE MIR 98 156 -52 24 24 0 24 chr9 26136859 26136874 -91725753 + AT_rich Low_complexity Low_complexity 1 15 -26 571 86 0 0 chr9 26136874 26136955 -91725672 + L1PA6 LINE L1 6070 6150 -4 24 24 0 24 chr9 26136955 26136981 -91725646 + AT_rich Low_complexity Low_complexity 15 41 0 6219 225 21 52 chr9 26137098 26139731 -91722896 + L1PA16 LINE L1 2694 4978 -1188 1840 144 17 3 chr9 26139731 26140030 -91722597 - AluSx SINE Alu -9 303 1 6219 225 21 52 chr9 26140030 26141051 -91721576 + L1PA16 LINE L1 4978 6029 -137 410 49 16 0 chr9 26141061 26141122 -91721505 + (TA)n Simple_repeat Simple_repeat 1 62 0 678 143 0 0 chr9 26141172 26141291 -91721336 + L1PA16 LINE L1 6045 6163 -3 650 314 93 64 chr9 26141998 26142489 -91720138 + L2 LINE L2 2690 3203 -110 2375 87 7 0 chr9 26142489 26142799 -91719828 - AluSp SINE Alu -1 312 1 650 314 93 64 chr9 26142799 26142914 -91719713 + L2 LINE L2 3203 3313 0 355 225 34 0 chr9 26143420 26143442 -91719185 + MER58 DNA MER1_type 2318 2338 -82 207 0 0 0 chr9 26143442 26143465 -91719162 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 355 225 34 0 chr9 26143465 26143531 -91719096 + MER58 DNA MER1_type 2338 2409 -11 240 278 106 46 chr9 26143612 26143763 -91718864 - MIR SINE MIR -17 245 86 281 333 75 65 chr9 26146320 26146521 -91716106 - MIR3 SINE MIR -5 203 1 1239 263 147 18 chr9 26149842 26150393 -91712234 - L1ME2 LINE L1 -49 6115 5494 2113 92 0 14 chr9 26150560 26150884 -91711743 + AluY SINE Alu 1 320 0 180 77 0 0 chr9 26150921 26150947 -91711680 + (CAA)n Simple_repeat Simple_repeat 3 28 0 446 304 131 13 chr9 26151280 26151758 -91710869 - L1ME LINE L1 -440 5705 5164 310 346 123 35 chr9 26152040 26152526 -91710101 - L1ME LINE L1 -5050 1069 541 21 0 0 0 chr9 26152775 26152796 -91709831 + AT_rich Low_complexity Low_complexity 1 21 0 5609 193 26 26 chr9 26152895 26154547 -91708080 - L1MC1 LINE L1 -1 6332 4678 443 48 16 0 chr9 26154555 26154617 -91708010 - MADE1 DNA Mariner 0 80 18 232 324 0 0 chr9 26154837 26154908 -91707719 + CT-rich Low_complexity Low_complexity 2 72 0 2125 125 0 6 chr9 26154908 26155220 -91707407 - AluSq SINE Alu -2 311 2 193 291 36 0 chr9 26155235 26155290 -91707337 - L2 LINE L2 -35 3278 3222 617 354 62 24 chr9 26155446 26155785 -91706842 - L2 LINE L2 -157 3156 2805 2043 114 10 0 chr9 26157523 26157812 -91704815 + AluSg SINE Alu 1 292 -18 581 274 98 35 chr9 26157892 26158210 -91704417 - MLT1H LTR MaLR -150 399 62 2014 94 0 0 chr9 26158500 26158766 -91703861 - AluSc SINE Alu -43 266 1 330 211 0 0 chr9 26159321 26159435 -91703192 + (TA)n Simple_repeat Simple_repeat 1 114 0 2257 255 98 31 chr9 26161823 26163323 -91699304 - L1ME1 LINE L1 -170 5996 4405 238 274 95 0 chr9 26163819 26163903 -91698724 + MIR3 SINE MIR 72 163 -45 180 330 102 11 chr9 26164912 26165000 -91697627 - L2 LINE L2 0 3313 3218 212 226 32 0 chr9 26166142 26166204 -91696423 + (TCTA)n Simple_repeat Simple_repeat 1 64 0 2041 179 60 3 chr9 26166214 26166600 -91696027 - MLT2C2 LTR ERVL -56 408 1 856 242 78 55 chr9 26167032 26167417 -91695210 + MER66A LTR ERV1 45 438 -40 239 271 59 0 chr9 26167509 26167594 -91695033 - MIR SINE MIR -30 232 143 23 92 0 0 chr9 26168335 26168400 -91694227 + AT_rich Low_complexity Low_complexity 1 65 0 7265 45 0 3 chr9 26168431 26169506 -91693121 - L1PA5 LINE L1 -1 6153 5082 4627 47 5 0 chr9 26169511 26170089 -91692538 - L1PA5 LINE L1 -1171 4975 4395 21924 64 4 0 chr9 26170090 26172970 -91689657 + L1P LINE L1 690 3580 -2566 500 68 0 0 chr9 26173537 26173610 -91689017 + L1PA5 LINE L1 5981 6053 -101 29 47 0 0 chr9 26173616 26173659 -91688968 + AT_rich Low_complexity Low_complexity 1 43 0 274 301 54 0 chr9 26173980 26174073 -91688554 - MIR SINE MIR -6 256 159 226 326 94 44 chr9 26174334 26174515 -91688112 + MIR SINE MIR 65 254 -8 226 415 47 9 chr9 26174952 26175058 -91687569 + MIR SINE MIR 20 129 -133 499 287 115 52 chr9 26175360 26175550 -91687077 - L1ME3A LINE L1 -281 5889 5712 1912 130 36 0 chr9 26175550 26175861 -91686766 + AluSx SINE Alu 1 321 0 499 287 115 52 chr9 26175861 26176191 -91686436 - L1ME3A LINE L1 -458 5712 5335 356 301 54 0 chr9 26176264 26176450 -91686177 - L1ME3A LINE L1 -928 5218 5023 311 311 56 80 chr9 26176568 26176819 -91685808 + LTR16B LTR ERVL 208 452 -12 208 294 52 58 chr9 26177060 26177215 -91685412 + MIR SINE MIR 64 216 -46 1956 138 0 0 chr9 26177339 26177622 -91685005 + AluSx SINE Alu 1 283 -29 246 62 0 0 chr9 26177622 26177654 -91684973 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 234 261 0 0 chr9 26177769 26177838 -91684789 + (TA)n Simple_repeat Simple_repeat 1 69 0 246 294 94 69 chr9 26178936 26179096 -91683531 + MER103 DNA DNA 2 165 -1 1806 201 75 2 chr9 26179457 26179856 -91682771 - MSTA LTR MaLR 0 428 1 524 286 142 33 chr9 26179858 26180487 -91682140 - L1ME3A LINE L1 -1133 5013 4317 22 0 0 0 chr9 26180549 26180571 -91682056 + AT_rich Low_complexity Low_complexity 1 22 0 31 82 0 0 chr9 26180759 26180832 -91681795 + AT_rich Low_complexity Low_complexity 1 73 0 296 62 0 21 chr9 26180904 26180952 -91681675 + (TTTTG)n Simple_repeat Simple_repeat 4 50 0 7053 11 0 1 chr9 26180952 26181754 -91680873 - L1PA2 LINE L1 -16 6139 5339 234 0 0 0 chr9 26182406 26182432 -91680195 + (CAA)n Simple_repeat Simple_repeat 2 27 0 183 80 0 0 chr9 26182445 26182470 -91680157 + (CA)n Simple_repeat Simple_repeat 2 26 0 1734 189 25 0 chr9 26183924 26184289 -91678338 - L1MB1 LINE L1 -1 6167 5794 186 43 0 0 chr9 26184289 26184312 -91678315 + (TG)n Simple_repeat Simple_repeat 2 24 0 5752 210 24 8 chr9 26184413 26186158 -91676469 - L1MB1 LINE L1 -382 5786 4011 3382 186 6 27 chr9 26186166 26186899 -91675728 - L1MC1 LINE L1 -5 6608 5892 330 169 0 0 chr9 26186901 26186966 -91675661 + (TATATG)n Simple_repeat Simple_repeat 2 66 0 2445 198 9 60 chr9 26186968 26187958 -91674669 - L1MC1 LINE L1 -739 5874 4948 3969 193 43 16 chr9 26188003 26190048 -91672579 - L1MC1 LINE L1 -3401 3025 826 712 270 43 9 chr9 26190065 26190276 -91672351 - L1MC1 LINE L1 -6136 471 254 579 336 70 32 chr9 26190746 26191091 -91671536 + LTR16C LTR ERVL 85 442 -49 1203 236 20 55 chr9 26191204 26191548 -91671079 - MLT2B1 LTR ERVL -186 334 3 393 39 0 0 chr9 26191820 26191871 -91670756 + (TG)n Simple_repeat Simple_repeat 1 51 0 25 0 0 0 chr9 26192093 26192118 -91670509 + AT_rich Low_complexity Low_complexity 1 25 0 381 263 30 0 chr9 26192855 26192954 -91669673 + MER94 DNA DNA 1 102 -32 309 313 129 0 chr9 26195076 26195223 -91667404 + MER5B DNA MER1_type 7 172 -6 27 29 0 0 chr9 26195757 26195791 -91666836 + AT_rich Low_complexity Low_complexity 1 34 0 1623 70 0 0 chr9 26195797 26196010 -91666617 - L1PA4 LINE L1 -11 6144 5932 22 0 0 0 chr9 26196295 26196317 -91666310 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr9 26197167 26197196 -91665431 + AT_rich Low_complexity Low_complexity 1 29 0 185 375 0 0 chr9 26197505 26197561 -91665066 - MIR SINE MIR -148 114 59 21 57 0 0 chr9 26197729 26197764 -91664863 + AT_rich Low_complexity Low_complexity 1 35 0 325 262 47 19 chr9 26198111 26198218 -91664409 + MIR SINE MIR 75 184 -78 208 321 47 65 chr9 26198452 26198667 -91663960 - L3 LINE CR1 -12 1565 1355 310 272 206 46 chr9 26198770 26199208 -91663419 - L1ME4a LINE L1 -92 6029 5522 23 33 0 0 chr9 26199312 26199342 -91663285 + AT_rich Low_complexity Low_complexity 1 30 0 189 403 16 16 chr9 26199355 26199484 -91663143 - MIR3 SINE MIR -52 156 28 1620 132 21 4 chr9 26199772 26200015 -91662612 + AluSx SINE Alu 37 283 -29 198 0 0 0 chr9 26200015 26200037 -91662590 + (CAAT)n Simple_repeat Simple_repeat 1 22 0 29819 116 21 59 chr9 26200075 26205804 -91656823 + L1PA7 LINE L1 12 5456 -698 2227 77 0 20 chr9 26205804 26206103 -91656524 + AluY SINE Alu 1 293 -18 29819 116 21 59 chr9 26206103 26206764 -91655863 + L1PA7 LINE L1 5456 6141 -13 196 357 121 6 chr9 26206962 26207119 -91655508 - MIR SINE MIR -11 251 77 181 231 0 0 chr9 26207330 26207369 -91655258 - L2 LINE L2 -4 3309 3271 1033 170 85 0 chr9 26207667 26207855 -91654772 - MER2 DNA MER2_type -140 205 2 216 285 44 7 chr9 26207864 26208001 -91654626 + (TATATG)n Simple_repeat Simple_repeat 2 143 0 * 289 233 34 40 chr9 26207906 26208067 -91654560 + (TA)n Simple_repeat Simple_repeat 2 163 -13 2108 126 0 0 chr9 26208067 26208361 -91654266 + AluSx SINE Alu 1 294 -18 289 233 34 40 chr9 26208361 26208375 -91654252 + (TA)n Simple_repeat Simple_repeat 163 176 0 204 314 118 20 chr9 26208762 26208864 -91653763 - L2 LINE L2 -982 2332 2221 3465 123 65 125 chr9 26208978 26209159 -91653468 + LTR1 LTR ERV1 1 191 -594 2272 86 3 0 chr9 26209159 26209451 -91653176 + AluSc SINE Alu 1 293 -16 3465 123 65 125 chr9 26209451 26210104 -91652523 + LTR1 LTR ERV1 191 785 0 280 340 0 30 chr9 26210355 26210455 -91652172 + MIR SINE MIR 51 147 -115 1798 153 14 17 chr9 26210966 26211260 -91651367 - AluSx SINE Alu -17 295 3 192 259 17 35 chr9 26212767 26212825 -91649802 + MIR SINE MIR 92 148 -60 1348 267 50 2 chr9 26213974 26214393 -91648234 - L1ME3A LINE L1 -235 5935 5497 199 357 0 0 chr9 26216043 26216113 -91646514 + L3 LINE CR1 1317 1386 -191 24 85 0 0 chr9 26216287 26216346 -91646281 + AT_rich Low_complexity Low_complexity 1 59 0 186 43 0 0 chr9 26216464 26216487 -91646140 + (TCTA)n Simple_repeat Simple_repeat 4 26 0 410 225 60 18 chr9 26216692 26216850 -91645777 + MIR SINE MIR 30 192 -62 323 274 0 0 chr9 26216879 26216952 -91645675 - LTR67 LTR ERVL -79 478 406 2744 171 21 6 chr9 26217754 26218227 -91644400 - MER66B LTR ERV1 0 486 7 1390 158 38 19 chr9 26218338 26218603 -91644024 - LTR23 LTR ERV1 -1 436 167 2531 175 130 16 chr9 26218656 26219209 -91643418 - LTR51 LTR ERV1 -53 618 3 290 115 19 0 chr9 26219210 26219262 -91643365 + (TG)n Simple_repeat Simple_repeat 2 54 0 215 283 67 0 chr9 26219290 26219350 -91643277 + L2 LINE L2 3200 3263 -50 195 414 11 0 chr9 26219457 26219544 -91643083 - L2 LINE L2 -219 3053 2966 2676 152 47 12 chr9 26219591 26219737 -91642890 + MER84 LTR ERV1 1 140 -367 258 81 0 0 chr9 26219737 26219774 -91642853 + (TA)n Simple_repeat Simple_repeat 2 38 0 2676 152 47 12 chr9 26219774 26220114 -91642513 + MER84 LTR ERV1 140 504 -3 1314 147 17 37 chr9 26220420 26220875 -91641752 + LTR54 LTR ERV1 1 505 -5 233 0 62 0 chr9 26220967 26220999 -91641628 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 1982 120 0 7 chr9 26221002 26221285 -91641342 - AluSx SINE Alu -31 281 1 216 0 0 0 chr9 26221748 26221772 -91640855 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 294 325 45 6 chr9 26222137 26222294 -91640333 + MIR SINE MIR 100 262 0 293 348 141 7 chr9 26223418 26223553 -91639074 - MER91A DNA MER1_type -22 174 22 2024 217 89 6 chr9 26224307 26224781 -91637846 - MER67D LTR ERV1 -1 513 1 505 229 82 12 chr9 26225334 26225504 -91637123 - L1MC4 LINE L1 -380 7662 7481 626 259 15 71 chr9 26225508 26225705 -91636922 + MER58A DNA MER1_type 39 224 0 236 258 194 16 chr9 26225754 26225878 -91636749 + MIR SINE MIR 79 224 -38 253 298 33 25 chr9 26226091 26226212 -91636415 + MLT1L LTR MaLR 44 165 -450 1784 252 72 74 chr9 26226631 26227425 -91635202 - L1ME3A LINE L1 -5 6165 5354 1332 205 89 0 chr9 26227425 26227683 -91634944 - AluJo SINE Alu -31 281 1 1784 252 72 74 chr9 26227683 26228080 -91634547 - L1ME3A LINE L1 -816 5354 4958 1125 224 133 23 chr9 26229263 26229655 -91632972 + MER63B DNA MER1_type 1 435 -1 514 282 100 6 chr9 26229768 26229938 -91632689 - MER5A DNA MER1_type 0 189 4 10382 23 1 0 chr9 26229938 26231399 -91631228 - L1PA3 LINE L1 -836 5310 3847 6996 31 1 0 chr9 26231399 26232256 -91630371 + L1PA3 LINE L1 5313 6170 0 332 318 11 45 chr9 26232541 26232720 -91629907 + CT-rich Low_complexity Low_complexity 5 177 0 31 26 0 0 chr9 26232946 26232984 -91629643 + AT_rich Low_complexity Low_complexity 1 38 0 3935 195 10 16 chr9 26233004 26234028 -91628599 + L1P5 LINE L1 4440 5451 -700 22 0 0 0 chr9 26234151 26234173 -91628454 + AT_rich Low_complexity Low_complexity 1 22 0 2580 211 34 8 chr9 26235641 26236165 -91626462 + MLT2B3 LTR ERVL 1 395 -19 213 156 0 22 chr9 26236167 26236212 -91626415 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 250 93 23 23 chr9 26236212 26236255 -91626372 + MLT2B3 LTR ERVL 509 551 -3 2584 24 0 0 chr9 26236288 26236582 -91626045 + AluY SINE Alu 1 294 -17 180 330 82 52 chr9 26237191 26237288 -91625339 - MIR3 SINE MIR -108 100 1 370 204 19 0 chr9 26237632 26237735 -91624892 + (TA)n Simple_repeat Simple_repeat 2 106 0 440 236 55 18 chr9 26237902 26238012 -91624615 - L2 LINE L2 0 3313 3200 24 32 0 0 chr9 26238387 26238418 -91624209 + AT_rich Low_complexity Low_complexity 1 31 0 187 279 33 33 chr9 26238534 26238595 -91624032 + L2 LINE L2 3211 3271 -1 234 365 24 2 chr9 26238645 26238797 -91623830 + MIR SINE MIR 15 172 -36 816 242 146 39 chr9 26239301 26239631 -91622996 - MLT1A1 LTR MaLR 0 365 1 852 316 93 23 chr9 26240162 26240592 -91622035 - LTR16B LTR ERVL -2 462 3 331 281 99 28 chr9 26240746 26240999 -91621628 - L1MC4a LINE L1 -1926 5882 5612 3162 194 64 63 chr9 26241006 26241876 -91620751 - L1MD2 LINE L1 -2 6357 5487 612 209 38 43 chr9 26241882 26242092 -91620535 - L1MD2 LINE L1 -1191 4955 4747 594 274 95 12 chr9 26242106 26242391 -91620236 - L1MC4a LINE L1 -515 5606 5292 22 0 0 0 chr9 26242534 26242556 -91620071 + AT_rich Low_complexity Low_complexity 1 22 0 517 284 14 0 chr9 26242595 26242736 -91619891 + MIR SINE MIR 96 238 -24 34 0 0 0 chr9 26242851 26242885 -91619742 + AT_rich Low_complexity Low_complexity 1 34 0 1508 251 209 22 chr9 26242927 26243478 -91619149 + MLT1E1 LTR MaLR 1 654 0 24 85 0 0 chr9 26244140 26244199 -91618428 + AT_rich Low_complexity Low_complexity 1 59 0 197 178 22 0 chr9 26244362 26244407 -91618220 + GA-rich Low_complexity Low_complexity 3 48 0 24 0 0 0 chr9 26244747 26244771 -91617856 + AT_rich Low_complexity Low_complexity 1 24 0 26 19 0 58 chr9 26245167 26245219 -91617408 + AT_rich Low_complexity Low_complexity 1 49 0 216 135 0 0 chr9 26248344 26248381 -91614246 + (GA)n Simple_repeat Simple_repeat 1 37 0 1730 169 0 16 chr9 26248741 26249048 -91613579 + AluJo SINE Alu 11 312 0 327 104 0 0 chr9 26249054 26249102 -91613525 + (GGAA)n Simple_repeat Simple_repeat 3 50 0 34 65 0 0 chr9 26249356 26249418 -91613209 + AT_rich Low_complexity Low_complexity 1 62 0 392 298 8 8 chr9 26251099 26251230 -91611397 - MIR3 SINE MIR 0 208 78 1451 163 8 4 chr9 26252099 26252344 -91610283 - AluJb SINE Alu 0 312 67 247 368 8 24 chr9 26252488 26252613 -91610014 + MLT2E LTR ERVL 32 154 -474 429 20 0 0 chr9 26252859 26252909 -91609718 + (TG)n Simple_repeat Simple_repeat 2 51 0 363 269 167 54 chr9 26252912 26253247 -91609380 - L1ME4a LINE L1 -224 5897 5525 415 226 155 32 chr9 26255018 26255173 -91607454 - MER45A DNA AcHobo 0 178 5 711 216 67 36 chr9 26255371 26255565 -91607062 - MER20 DNA MER1_type 0 219 20 400 275 0 0 chr9 26255604 26255695 -91606932 - L1MC5 LINE L1 -48 7913 7823 188 300 0 0 chr9 26255799 26255849 -91606778 - MER5A DNA MER1_type -77 112 63 200 206 55 68 chr9 26258213 26258286 -91604341 - MIR SINE MIR -69 193 122 542 300 97 4 chr9 26258578 26258805 -91603822 + MLT1C LTR MaLR 216 463 -4 2471 216 22 51 chr9 26258806 26259477 -91603150 + MLT1C-int LTR MaLR 4 655 -716 406 256 0 0 chr9 26259540 26259626 -91603001 + MLT1C-int LTR MaLR 661 746 -625 26 0 0 0 chr9 26259637 26259663 -91602964 + AT_rich Low_complexity Low_complexity 1 26 0 2821 201 130 100 chr9 26259731 26260284 -91602343 - L1MC3 LINE L1 -9 7845 7310 237 326 12 0 chr9 26260284 26260370 -91602257 - MLT1F1 LTR MaLR -436 131 45 2821 201 130 100 chr9 26260370 26260860 -91601767 - L1MC3 LINE L1 -544 7310 6683 1425 175 35 132 chr9 26260860 26261254 -91601373 - MLT1B LTR MaLR 0 390 35 1150 279 65 20 chr9 26261269 26261610 -91601017 - ERVL LTR ERVL -3990 1774 1419 1727 223 41 7 chr9 26261615 26262401 -91600226 - L1MC3 LINE L1 -743 5472 4899 * 2527 271 82 33 chr9 26262398 26264097 -91598530 - L1MC3 LINE L1 -2717 3498 1753 811 271 50 14 chr9 26264126 26264484 -91598143 - MER69 DNA AcHobo -293 2233 1863 1084 304 87 24 chr9 26264506 26265056 -91597571 - MER69 DNA AcHobo -402 824 240 1652 160 24 17 chr9 26265101 26265389 -91597238 + AluJo SINE Alu 12 301 -11 444 191 0 0 chr9 26265472 26265566 -91597061 + (TA)n Simple_repeat Simple_repeat 2 95 0 400 282 8 17 chr9 26265566 26265683 -91596944 - MER69 DNA AcHobo -2410 116 1 232 89 22 22 chr9 26265891 26265936 -91596691 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 283 267 38 9 chr9 26266169 26266274 -91596353 - LTR37B LTR ERV1 -359 109 2 2495 46 10 0 chr9 26266390 26266692 -91595935 - AluY SINE Alu -6 305 1 1543 163 13 64 chr9 26266971 26267284 -91595343 + AluJb SINE Alu 9 305 -7 22 70 0 0 chr9 26267369 26267412 -91595215 + AT_rich Low_complexity Low_complexity 1 43 0 331 238 50 40 chr9 26269598 26269699 -91592928 - MIR SINE MIR -64 198 97 183 80 0 0 chr9 26270152 26270177 -91592450 + (CA)n Simple_repeat Simple_repeat 2 26 0 321 363 52 15 chr9 26270190 26270325 -91592302 + L2 LINE L2 3133 3272 0 180 125 0 0 chr9 26271274 26271306 -91591321 + (TA)n Simple_repeat Simple_repeat 2 33 0 2190 129 0 3 chr9 26271431 26271741 -91590886 + AluSx SINE Alu 3 311 -1 1525 201 28 12 chr9 26271983 26272302 -91590325 - MER44D DNA MER2_type -3 606 13 1961 171 19 5 chr9 26272407 26272781 -91589846 + L1MC1 LINE L1 5645 6023 -310 1432 181 15 0 chr9 26272877 26273147 -91589480 + L1MC1 LINE L1 6058 6331 -2 219 204 0 20 chr9 26274532 26274581 -91588046 + (TA)n Simple_repeat Simple_repeat 1 48 0 1003 225 78 30 chr9 26275041 26275409 -91587218 - MSTC LTR MaLR 0 428 3 5087 131 18 20 chr9 26277844 26279196 -91583431 + L1PB2 LINE L1 4796 6151 0 8058 112 40 17 chr9 26279843 26281098 -91581529 - HSMAR1 DNA Mariner 0 1287 4 197 311 0 0 chr9 26281100 26281161 -91581466 - L2 LINE L2 -1049 2265 2205 2259 155 32 32 chr9 26281837 26282269 -91580358 + Tigger2a DNA MER2_type 2 433 -1 315 0 0 0 chr9 26282270 26282305 -91580322 + (TG)n Simple_repeat Simple_repeat 2 36 0 1856 133 14 0 chr9 26282308 26282616 -91580011 - AluSx SINE Alu 0 312 1 24 67 0 0 chr9 26283019 26283064 -91579563 + AT_rich Low_complexity Low_complexity 1 45 0 328 227 39 31 chr9 26283258 26283386 -91579241 + L1MCa LINE L1 1943 2071 -4355 336 354 77 48 chr9 26283525 26283901 -91578726 + L2 LINE L2 2924 3310 -3 26 30 0 0 chr9 26284434 26284467 -91578160 + AT_rich Low_complexity Low_complexity 1 33 0 1650 145 0 4 chr9 26284592 26284834 -91577793 - AluSg SINE Alu -15 295 55 323 227 0 53 chr9 26284937 26285012 -91577615 - L1 LINE L1 -2018 4128 4058 * 3985 206 41 23 chr9 26284999 26286002 -91576625 + L1MB1 LINE L1 4618 5663 -505 2183 99 3 13 chr9 26286002 26286343 -91576284 + AluSp SINE Alu 1 313 0 3985 206 41 23 chr9 26286343 26286850 -91575777 + L1MB1 LINE L1 5663 6159 -9 444 337 22 22 chr9 26286914 26287095 -91575532 + LTR16A LTR ERVL 263 443 -7 1288 315 131 27 chr9 26288244 26288901 -91573726 + L1MC3 LINE L1 1 725 -6134 2110 223 65 60 chr9 26288992 26290392 -91572235 + L1MC3 LINE L1 934 2453 -4504 1888 295 57 8 chr9 26290457 26291512 -91571115 + L1MC3 LINE L1 2776 3844 -3113 2449 227 67 28 chr9 26291811 26293199 -91569428 + L1MC3 LINE L1 5184 6633 -749 * 2744 208 49 92 chr9 26293194 26293897 -91568730 + L1MC3 LINE L1 6974 7706 -890 1370 242 46 3 chr9 26293897 26294244 -91568383 + MLT1A1 LTR MaLR 1 362 -3 369 0 0 0 chr9 26294244 26294285 -91568342 + (CA)n Simple_repeat Simple_repeat 2 42 0 363 44 0 0 chr9 26294284 26294329 -91568298 + (GA)n Simple_repeat Simple_repeat 2 46 0 2744 208 49 92 chr9 26294285 26294550 -91568077 + L1MC3 LINE L1 7704 7859 -737 309 89 0 0 chr9 26294551 26294596 -91568031 + (TG)n Simple_repeat Simple_repeat 2 46 0 206 279 15 15 chr9 26295851 26295919 -91566708 + L2 LINE L2 3245 3312 -1 231 357 36 30 chr9 26296311 26296479 -91566148 + MER20B DNA MER1_type 4 172 -611 25 31 0 0 chr9 26298182 26298214 -91564413 + AT_rich Low_complexity Low_complexity 1 32 0 182 304 89 30 chr9 26298325 26298460 -91564167 + MIR SINE MIR 120 262 0 188 377 0 0 chr9 26298746 26298815 -91563812 - L2 LINE L2 -7 3306 3238 543 329 43 10 chr9 26300069 26300276 -91562351 - MIR SINE MIR -2 260 47 235 286 18 0 chr9 26301736 26301792 -91560835 - L2 LINE L2 -8 3264 3208 330 270 9 26 chr9 26302910 26303025 -91559602 + Charlie8 DNA MER1_type 77 189 -2228 243 330 36 0 chr9 26303091 26303203 -91559424 + Charlie8 DNA MER1_type 298 413 -2004 2056 168 34 50 chr9 26303535 26303976 -91558651 - Tigger2a DNA MER2_type 0 434 1 5448 195 29 16 chr9 26304935 26306755 -91555872 - L1PA13 LINE L1 -3536 3261 1406 4613 227 80 11 chr9 26306789 26307848 -91554779 - L1PA13 LINE L1 -5573 1214 83 208 217 0 0 chr9 26308231 26308277 -91554350 + (CA)n Simple_repeat Simple_repeat 1 46 0 1346 210 24 15 chr9 26309787 26310116 -91552511 - L1 LINE L1 -1534 4612 4281 409 151 0 0 chr9 26310221 26310294 -91552333 - AluS SINE Alu -228 73 1 2326 92 0 3 chr9 26311186 26311491 -91551136 - AluSx SINE Alu -8 304 1 21 36 0 0 chr9 26312411 26312439 -91550188 + AT_rich Low_complexity Low_complexity 1 28 0 351 0 0 0 chr9 26312622 26312661 -91549966 + (CA)n Simple_repeat Simple_repeat 2 40 0 23 0 0 0 chr9 26314437 26314460 -91548167 + AT_rich Low_complexity Low_complexity 1 23 0 273 29 0 0 chr9 26314731 26314765 -91547862 + (CA)n Simple_repeat Simple_repeat 1 34 0 333 190 0 0 chr9 26315090 26315148 -91547479 - L1MC2 LINE L1 -23 6321 6264 952 243 106 58 chr9 26315148 26315526 -91547101 - MSTD LTR MaLR 0 396 1 22 0 0 0 chr9 26315749 26315771 -91546856 + AT_rich Low_complexity Low_complexity 1 22 0 289 289 26 18 chr9 26315787 26315901 -91546726 - L1MC4 LINE L1 -601 7441 7327 1867 223 50 72 chr9 26316713 26317292 -91545335 - MER74B LTR ERVL -2 620 55 250 281 0 31 chr9 26317821 26317885 -91544742 - MLT2E LTR ERVL -506 122 61 311 339 18 0 chr9 26318146 26318255 -91544372 + MIR SINE MIR 36 146 -62 204 293 0 40 chr9 26321926 26322001 -91540626 + GA-rich Low_complexity Low_complexity 1 72 0 196 364 133 7 chr9 26323064 26323224 -91539403 + MIR SINE MIR 37 217 -45 190 235 0 20 chr9 26323299 26323350 -91539277 + L2 LINE L2 3219 3268 -4 268 159 0 0 chr9 26323363 26323407 -91539220 - LTR16C LTR ERVL 0 491 448 1812 55 4 0 chr9 26324098 26324355 -91538272 + L1PA4 LINE L1 5804 6061 -111 327 67 0 0 chr9 26324325 26324370 -91538257 + L1PA3 LINE L1 6106 6150 -5 * 3898 182 90 17 chr9 26325210 26326220 -91536407 - L1PBa LINE L1 -3038 3824 2683 3740 212 11 10 chr9 26326220 26327027 -91535600 + L1 LINE L1 3355 4162 -1984 3697 123 9 6 chr9 26327029 26327772 -91534855 + L1P5 LINE L1 5030 5771 -380 342 0 0 0 chr9 26327779 26327817 -91534810 + (TA)n Simple_repeat Simple_repeat 2 39 0 20607 141 32 30 chr9 26327928 26331779 -91530848 - L1P3 LINE L1 -1501 4960 1104 1548 113 0 4 chr9 26331779 26332019 -91530608 + L1P LINE L1 3789 4027 -2119 6626 151 24 16 chr9 26332027 26333159 -91529468 - L1P3 LINE L1 -5315 1146 6 2465 68 0 0 chr9 26333773 26334084 -91528543 - AluY SINE Alu 0 311 1 1835 167 0 0 chr9 26334278 26334554 -91528073 - AluSg SINE Alu -29 281 6 580 365 16 4 chr9 26334979 26335223 -91527404 + MIR SINE MIR 16 262 0 23 54 0 0 chr9 26335458 26335495 -91527132 + AT_rich Low_complexity Low_complexity 1 37 0 216 345 86 35 chr9 26335970 26336086 -91526541 - L2 LINE L2 -8 3305 3184 499 339 20 16 chr9 26337646 26337891 -91524736 + L1MEc LINE L1 173 418 -5978 711 249 61 42 chr9 26338238 26338551 -91524076 + L1MB7 LINE L1 3972 4290 -1856 * 969 266 118 65 chr9 26338544 26339194 -91523433 + L1MB7 LINE L1 5490 6174 -10 414 305 32 21 chr9 26339225 26339415 -91523212 + L1ME1 LINE L1 5971 6162 -4 503 275 67 11 chr9 26339720 26339949 -91522678 + L1MEc LINE L1 1023 1343 -4862 4373 246 88 29 chr9 26340230 26342190 -91520437 + L1MA7 LINE L1 3387 5481 -743 1520 156 33 47 chr9 26342190 26342540 -91520087 + L1MA7 LINE L1 5933 6287 -4 195 100 0 0 chr9 26342631 26342661 -91519966 + (CAA)n Simple_repeat Simple_repeat 2 31 0 777 296 37 0 chr9 26342814 26342987 -91519640 - LTR16C LTR ERVL -79 412 228 1676 174 135 26 chr9 26342987 26343373 -91519254 + MSTA LTR MaLR 1 428 0 777 296 37 0 chr9 26343373 26343415 -91519212 - LTR16C LTR ERVL -263 228 189 940 306 49 43 chr9 26343489 26343937 -91518690 - L1MDb LINE L1 -5887 522 69 1985 144 123 0 chr9 26343937 26344318 -91518309 - MSTA LTR MaLR 0 428 1 940 306 49 43 chr9 26344318 26344382 -91518245 - L1MDb LINE L1 -6340 69 7 22 0 0 0 chr9 26345185 26345207 -91517420 + AT_rich Low_complexity Low_complexity 1 22 0 270 0 0 0 chr9 26345469 26345499 -91517128 + (CA)n Simple_repeat Simple_repeat 1 30 0 29 84 0 0 chr9 26345499 26345570 -91517057 + AT_rich Low_complexity Low_complexity 1 71 0 231 326 58 55 chr9 26345839 26346130 -91516497 + MLT1H LTR MaLR 118 409 -140 255 244 67 0 chr9 26346266 26346356 -91516271 - L1MC4 LINE L1 -1339 6703 6608 41506 57 7 2 chr9 26346809 26352939 -91509688 - L1PA4 LINE L1 0 6155 2 1036 264 100 11 chr9 26353056 26353633 -91508994 + L1ME1 LINE L1 5161 5788 -571 417 224 8 8 chr9 26353760 26353885 -91508742 + L1ME1 LINE L1 5785 5909 -257 190 341 101 47 chr9 26354093 26354222 -91508405 + MIR3 SINE MIR 10 145 -63 25 31 0 0 chr9 26354375 26354407 -91508220 + AT_rich Low_complexity Low_complexity 1 32 0 220 211 0 0 chr9 26354733 26354771 -91507856 + (CATATA)n Simple_repeat Simple_repeat 4 41 0 227 100 0 0 chr9 26354771 26354821 -91507806 + LTR66 LTR ERVL 398 447 -163 224 344 179 9 chr9 26356275 26356487 -91506140 + MIR SINE MIR 3 250 -12 180 152 0 0 chr9 26357593 26357626 -91505001 + (TG)n Simple_repeat Simple_repeat 2 34 0 2148 146 30 28 chr9 26358241 26358603 -91504024 - THE1B LTR MaLR -1 363 1 2409 77 0 10 chr9 26358824 26359137 -91503490 - AluY SINE Alu -1 310 1 24 53 0 0 chr9 26361376 26361414 -91501213 + AT_rich Low_complexity Low_complexity 1 38 0 199 369 45 27 chr9 26361447 26361558 -91501069 - L2 LINE L2 0 3313 3201 21 0 0 0 chr9 26361686 26361707 -91500920 + AT_rich Low_complexity Low_complexity 1 21 0 344 216 0 95 chr9 26361803 26361919 -91500708 + L1MC4 LINE L1 6604 6708 -1334 213 39 0 0 chr9 26361921 26361947 -91500680 + (TA)n Simple_repeat Simple_repeat 2 27 0 23 0 0 0 chr9 26362110 26362133 -91500494 + AT_rich Low_complexity Low_complexity 1 23 0 1984 151 5 78 chr9 26362801 26363186 -91499441 - THE1B LTR MaLR 0 364 8 22 35 0 0 chr9 26363205 26363234 -91499393 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr9 26364523 26364551 -91498076 + AT_rich Low_complexity Low_complexity 1 28 0 216 0 0 0 chr9 26364958 26364982 -91497645 + (TA)n Simple_repeat Simple_repeat 2 25 0 11739 97 8 2 chr9 26364989 26367440 -91495187 - L1PA7 LINE L1 -5 6464 4003 8009 115 9 3 chr9 26367440 26368195 -91494432 - L1PA7 LINE L1 -5285 1176 410 252 0 0 0 chr9 26368195 26368223 -91494404 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 8009 115 9 3 chr9 26368223 26368634 -91493993 - L1PA7 LINE L1 -6051 410 3 2555 233 74 64 chr9 26368830 26369517 -91493110 - L1MD2 LINE L1 -10 6349 5670 5902 88 19 25 chr9 26369517 26370925 -91491702 - L1PA13 LINE L1 0 6163 4780 378 0 0 0 chr9 26370925 26370967 -91491660 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 5902 88 19 25 chr9 26370967 26371348 -91491279 - L1PA13 LINE L1 -1383 4780 4398 2555 233 74 64 chr9 26371348 26372471 -91490156 - L1MD2 LINE L1 -689 5670 4522 1384 161 88 101 chr9 26372479 26372913 -91489714 - MSTA LTR MaLR 0 428 1 515 317 155 34 chr9 26373026 26373255 -91489372 - L1M4 LINE L1 -1300 4846 4646 2347 81 0 7 chr9 26373255 26373552 -91489075 - AluSc SINE Alu -14 295 1 515 317 155 34 chr9 26373552 26373845 -91488782 - L1M4 LINE L1 -1500 4646 4261 413 314 94 13 chr9 26374026 26374185 -91488442 - MIR SINE MIR -88 174 3 2202 36 0 0 chr9 26374841 26375090 -91487537 - AluY SINE Alu -13 298 50 438 280 168 0 chr9 26375112 26375255 -91487372 - MIR SINE MIR -68 194 28 182 307 93 0 chr9 26375791 26375866 -91486761 - MIR SINE MIR -95 113 32 523 200 9 17 chr9 26376043 26376158 -91486469 + MLT2B2 LTR ERVL 1 114 -401 302 264 36 45 chr9 26376166 26376276 -91486351 - L1MC4 LINE L1 -1339 6703 6595 562 132 41 11 chr9 26376282 26376824 -91485803 + (TA)n Simple_repeat Simple_repeat 1 558 0 607 127 28 18 chr9 26376837 26377123 -91485504 + (TA)n Simple_repeat Simple_repeat 1 289 0 241 82 82 61 chr9 26377125 26377174 -91485453 + MLT2B1 LTR ERVL 464 518 -2 23 0 0 0 chr9 26377180 26377203 -91485424 + AT_rich Low_complexity Low_complexity 1 23 0 333 359 106 20 chr9 26377277 26377625 -91485002 - L2 LINE L2 -782 2532 2155 42362 36 25 3 chr9 26377794 26383806 -91478821 - L1PA3 LINE L1 -11 6144 3 310 318 178 33 chr9 26384266 26384480 -91478147 - MIR SINE MIR -14 248 4 21 0 0 0 chr9 26384629 26384650 -91477977 + AT_rich Low_complexity Low_complexity 1 21 0 392 279 43 50 chr9 26385421 26385561 -91477066 + MIR SINE MIR 58 196 -66 1308 215 55 7 chr9 26385570 26385742 -91476885 - AluJo SINE Alu -5 307 114 569 33 43 0 chr9 26385742 26385834 -91476793 + (TA)n Simple_repeat Simple_repeat 2 97 0 1308 215 55 7 chr9 26385834 26385954 -91476673 - AluJo SINE Alu -198 114 1 314 304 31 12 chr9 26386438 26386599 -91476028 + L1MC3 LINE L1 6697 6860 -925 1014 279 43 3 chr9 26386607 26386955 -91475672 + MLT1A1 LTR MaLR 1 362 -3 348 24 0 0 chr9 26386955 26386996 -91475631 + (CA)n Simple_repeat Simple_repeat 2 42 0 * 363 44 0 0 chr9 26386995 26387040 -91475587 + (GA)n Simple_repeat Simple_repeat 2 46 0 668 188 91 0 chr9 26387107 26387261 -91475366 + L1MC3 LINE L1 6881 7048 -737 309 89 0 0 chr9 26387262 26387307 -91475320 + (TG)n Simple_repeat Simple_repeat 2 46 0 399 41 0 0 chr9 26387819 26387868 -91474759 + (TCCC)n Simple_repeat Simple_repeat 4 52 0 308 157 0 0 chr9 26388024 26388075 -91474552 + MER5A DNA MER1_type 16 66 -123 369 0 0 0 chr9 26388309 26388350 -91474277 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 233 233 11 0 chr9 26389012 26389102 -91473525 + (TA)n Simple_repeat Simple_repeat 2 92 0 304 283 0 30 chr9 26389102 26389201 -91473426 - L1MC4 LINE L1 -1333 6709 6614 492 198 9 0 chr9 26389324 26389430 -91473197 - L1MA10 LINE L1 -2 6332 6226 6576 74 8 4 chr9 26389916 26391430 -91471197 - L1PA8 LINE L1 -2 6170 4655 2040 280 63 34 chr9 26441472 26441814 -91420813 + L1M4 LINE L1 2997 3328 -2818 618 109 0 0 chr9 26441814 26441906 -91420721 + (TA)n Simple_repeat Simple_repeat 2 93 0 2040 280 63 34 chr9 26441906 26442306 -91420321 + L1M4 LINE L1 3328 3715 -2431 2248 97 0 3 chr9 26442306 26442614 -91420013 - AluSx SINE Alu -5 307 1 2040 280 63 34 chr9 26442614 26443101 -91419526 + L1M4 LINE L1 3715 4360 -1786 342 243 136 24 chr9 26443842 26444011 -91418616 - LTR41 LTR ERVL -585 188 1 357 248 41 7 chr9 26444376 26444521 -91418106 - L1MA10 LINE L1 -3 6331 6182 341 273 35 7 chr9 26444602 26444745 -91417882 - L1M4 LINE L1 -2791 3355 3209 * 3069 123 0 17 chr9 26444742 26445205 -91417422 - L1P LINE L1 -5691 455 1 599 250 69 39 chr9 26445228 26445588 -91417039 - L1M4 LINE L1 -2962 3184 2814 29 60 0 0 chr9 26445974 26446024 -91416603 + AT_rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr9 26446571 26446592 -91416035 + AT_rich Low_complexity Low_complexity 1 21 0 414 176 0 0 chr9 26446593 26446661 -91415966 - MER8 DNA MER2_type -2 237 170 * 1900 171 93 20 chr9 26446658 26446913 -91415714 + Tigger2 DNA MER2_type 2280 2515 -203 207 0 0 0 chr9 26446913 26446936 -91415691 + (TA)n Simple_repeat Simple_repeat 1 23 0 189 0 0 0 chr9 26446935 26446956 -91415671 + (CA)n Simple_repeat Simple_repeat 2 22 0 * 1900 171 93 20 chr9 26446936 26447109 -91415518 + Tigger2 DNA MER2_type 2515 2718 0 2623 10 0 0 chr9 26447442 26447736 -91414891 + AluYa5 SINE Alu 1 294 -17 260 257 171 0 chr9 26450437 26450507 -91412120 + L2 LINE L2 3229 3310 -3 374 226 43 43 chr9 26451331 26451446 -91411181 - MIR SINE MIR -10 252 138 278 265 0 15 chr9 26451932 26452000 -91410627 + MIR3 SINE MIR 111 177 -31 1819 158 67 12 chr9 26452275 26452604 -91410023 - MER7A DNA MER2_type 0 346 2 2316 67 14 0 chr9 26452961 26453258 -91409369 - AluY SINE Alu -10 301 1 541 299 98 5 chr9 26453541 26453735 -91408892 - MIR SINE MIR -10 252 41 306 291 152 6 chr9 26453974 26454132 -91408495 + MIR SINE MIR 82 262 0 237 33 0 0 chr9 26455055 26455085 -91407542 + (CA)n Simple_repeat Simple_repeat 2 31 0 27 29 0 0 chr9 26455099 26455133 -91407494 + AT_rich Low_complexity Low_complexity 1 34 0 502 290 86 56 chr9 26455264 26455927 -91406700 + L1MEd LINE L1 562 1244 -4875 428 315 56 23 chr9 26455955 26456171 -91406456 + L1MEd LINE L1 1344 1566 -4744 1245 198 4 4 chr9 26456826 26457064 -91405563 - THE1A LTR MaLR -117 238 1 10813 121 4 1 chr9 26457066 26458640 -91403987 - THE1B-int LTR MaLR -2 1578 1 1874 162 39 25 chr9 26458640 26458999 -91403628 - THE1B LTR MaLR 0 364 1 1973 124 39 7 chr9 26458999 26459306 -91403321 + MER57A-int LTR ERV1 6830 7146 -391 687 124 31 31 chr9 26459306 26459435 -91403192 + LTR54B LTR ERV1 3 131 -367 1294 93 205 5 chr9 26459436 26459651 -91402976 + MER57A-int LTR ERV1 7280 7537 0 1951 174 10 36 chr9 26459651 26460065 -91402562 + MER57A LTR ERV1 1 403 0 308 127 18 0 chr9 26460461 26460516 -91402111 + GA-rich Low_complexity Low_complexity 1 56 0 324 327 48 18 chr9 26460811 26460979 -91401648 + MIR SINE MIR 47 219 -43 22 0 0 0 chr9 26461190 26461212 -91401415 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr9 26462933 26462954 -91399673 + (A)n Simple_repeat Simple_repeat 1 21 0 556 151 0 32 chr9 26465976 26466161 -91396466 + (TA)n Simple_repeat Simple_repeat 1 179 0 302 244 0 12 chr9 26466189 26466271 -91396356 + (TA)n Simple_repeat Simple_repeat 1 81 0 26 30 0 0 chr9 26466449 26466482 -91396145 + AT_rich Low_complexity Low_complexity 1 33 0 276 43 128 0 chr9 26466485 26466532 -91396095 - L1MA4A LINE L1 -8 6295 6243 301 284 103 40 chr9 26466551 26466921 -91395706 - L1ME LINE L1 -503 5659 5267 21 36 0 0 chr9 26467002 26467030 -91395597 + AT_rich Low_complexity Low_complexity 1 28 0 252 0 0 0 chr9 26468732 26468760 -91393867 + (CA)n Simple_repeat Simple_repeat 1 28 0 395 270 0 0 chr9 26470392 26470492 -91392135 + MER5A DNA MER1_type 10 109 -80 230 340 72 0 chr9 26471188 26471285 -91391342 + L2 LINE L2 3209 3312 -1 542 207 17 35 chr9 26471388 26471504 -91391123 + MER5B DNA MER1_type 64 177 -1 386 361 75 40 chr9 26471558 26471804 -91390823 + L3 LINE CR1 1134 1395 -182 1951 153 3 0 chr9 26471804 26472104 -91390523 + AluSx SINE Alu 2 302 -10 386 361 75 40 chr9 26472104 26472178 -91390449 + L3 LINE CR1 1395 1465 -112 1995 113 7 23 chr9 26472293 26472594 -91390033 + AluSx SINE Alu 1 296 -16 423 341 66 22 chr9 26472622 26472848 -91389779 - MIR SINE MIR 0 262 27 23 33 0 0 chr9 26472987 26473017 -91389610 + AT_rich Low_complexity Low_complexity 1 30 0 692 191 46 40 chr9 26473022 26473195 -91389432 + Tigger3(Golem) DNA MER2_type 102 275 -2754 180 285 133 44 chr9 26473651 26473809 -91388818 + MIR SINE MIR 81 252 -10 905 207 101 23 chr9 26474558 26474775 -91387852 + L1PB4 LINE L1 5919 6152 -4 214 333 78 0 chr9 26475802 26475892 -91386735 + MIR SINE MIR 56 152 -110 262 250 45 23 chr9 26476911 26477087 -91385540 + (TA)n Simple_repeat Simple_repeat 1 180 0 278 311 12 0 chr9 26477727 26477904 -91384723 + L1ME3A LINE L1 5296 5476 -694 1469 249 10 27 chr9 26477907 26478313 -91384314 + L1ME3A LINE L1 5655 6053 -117 191 86 0 29 chr9 26479256 26479291 -91383336 + (TA)n Simple_repeat Simple_repeat 1 34 0 28 29 0 0 chr9 26479330 26479365 -91383262 + AT_rich Low_complexity Low_complexity 1 35 0 236 322 70 43 chr9 26479454 26479569 -91383058 + L2 LINE L2 3153 3270 -2 1859 174 7 0 chr9 26479898 26480196 -91382431 + AluSx SINE Alu 1 300 -12 2218 234 44 127 chr9 26481125 26482317 -91380310 - MER52A LTR ERV1 0 1755 663 268 358 56 12 chr9 26483550 26483712 -91378915 - MIR SINE MIR -70 192 24 372 266 195 64 chr9 26483842 26484109 -91378518 - L1MDb LINE L1 -4392 2433 2132 8670 83 4 0 chr9 26484126 26486214 -91376413 - L1PA7 LINE L1 -2 6152 4059 2342 176 30 17 chr9 26486270 26486729 -91375898 + MLT1C LTR MaLR 1 465 -2 361 336 40 10 chr9 26486925 26487234 -91375393 - L1MDb LINE L1 -4869 1673 1429 1524 219 6 0 chr9 26487301 26487620 -91375007 - L1PB4 LINE L1 -12 6144 5824 1921 40 0 0 chr9 26487620 26487845 -91374782 - L1PA5 LINE L1 -434 5721 5497 3281 50 0 0 chr9 26487845 26488240 -91374387 + L1PA5 LINE L1 5748 6149 -5 267 129 0 30 chr9 26488252 26488322 -91374305 - L1PB4 LINE L1 -318 5838 5772 257 230 150 0 chr9 26488320 26488420 -91374207 - L1MDb LINE L1 -5130 1517 1403 * 2401 205 64 123 chr9 26488503 26488950 -91373677 - L1MB8 LINE L1 -66 6108 5636 1476 237 92 31 chr9 26488950 26489426 -91373201 - MLT1D LTR MaLR 0 505 1 2401 205 64 123 chr9 26489426 26489597 -91373030 - L1MB8 LINE L1 -538 5636 5456 268 108 0 0 chr9 26489597 26489634 -91372993 + U2 snRNA snRNA 1 37 -151 2401 205 64 123 chr9 26489634 26489708 -91372919 - L1MB8 LINE L1 -718 5456 5433 1995 123 3 0 chr9 26489708 26490000 -91372627 - AluY SINE Alu -18 293 1 2401 205 64 123 chr9 26490000 26490114 -91372513 - L1MB8 LINE L1 -741 5433 5314 2235 77 24 0 chr9 26490117 26490415 -91372212 - AluY SINE Alu -6 305 1 422 365 14 18 chr9 26490812 26491094 -91371533 - L1MDb LINE L1 -6076 749 469 320 301 80 45 chr9 26491524 26491723 -91370904 - L1ME2 LINE L1 -243 5921 5716 21 82 0 0 chr9 26492094 26492143 -91370484 + AT_rich Low_complexity Low_complexity 1 49 0 496 171 30 0 chr9 26492606 26492770 -91369857 + (TA)n Simple_repeat Simple_repeat 2 170 0 197 156 0 0 chr9 26494622 26494654 -91367973 - L2 LINE L2 -15 3298 3267 1925 155 0 16 chr9 26494698 26495014 -91367613 - AluSx SINE Alu -1 311 1 288 292 92 8 chr9 26495156 26495286 -91367341 - L2 LINE L2 0 3313 3173 22 0 0 0 chr9 26495895 26495917 -91366710 + AT_rich Low_complexity Low_complexity 1 22 0 367 119 15 15 chr9 26497517 26497533 -91365094 + MADE1 DNA Mariner 14 29 -51 2247 114 7 0 chr9 26497533 26497840 -91364787 - AluSc SINE Alu 0 309 1 367 119 15 15 chr9 26497840 26497890 -91364737 + MADE1 DNA Mariner 28 80 0 1393 211 3 37 chr9 26498326 26498648 -91363979 - AluJo SINE Alu -1 311 1 32 43 0 0 chr9 26498842 26498888 -91363739 + AT_rich Low_complexity Low_complexity 1 46 0 1289 222 10 33 chr9 26499846 26500152 -91362475 - AluJo SINE Alu -13 299 1 240 325 155 15 chr9 26500226 26500491 -91362136 - L3 LINE CR1 -27 1550 1249 183 254 0 0 chr9 26500792 26500855 -91361772 + (CATATA)n Simple_repeat Simple_repeat 4 66 0 491 355 52 10 chr9 26500927 26501337 -91361290 + LTR16B LTR ERVL 3 460 -4 3008 164 6 0 chr9 26501443 26501938 -91360689 - L1PA16 LINE L1 -46 6120 5623 4972 83 3 0 chr9 26501938 26502591 -91360036 + HERV9 LTR ERV1 7745 8399 0 2612 143 82 185 chr9 26502591 26503630 -91358997 + pTR5 LTR ERV1 1 2438 0 6158 180 43 49 chr9 26503633 26504562 -91358065 + L1M4c LINE L1 873 1789 -4595 2774 162 12 12 chr9 26504562 26505057 -91357570 + LOR1a LTR ERV1 2 496 -1 6158 180 43 49 chr9 26505057 26505676 -91356951 + L1M4c LINE L1 1789 2411 -3973 716 161 7 7 chr9 26505677 26505820 -91356807 + L1MB3 LINE L1 6038 6180 -3 297 295 45 45 chr9 26505827 26506027 -91356600 + L1MEc LINE L1 1624 1823 -4573 445 293 63 52 chr9 26506211 26506498 -91356129 + L1MEc LINE L1 2012 2301 -4095 246 292 0 0 chr9 26507336 26507514 -91355113 + (TA)n Simple_repeat Simple_repeat 1 178 0 181 206 16 16 chr9 26508727 26508790 -91353837 + CT-rich Low_complexity Low_complexity 3 65 0 399 41 0 0 chr9 26509593 26509642 -91352985 + (TG)n Simple_repeat Simple_repeat 2 50 0 1312 248 162 12 chr9 26509661 26510174 -91352453 + L1MC4 LINE L1 6856 7445 -597 3638 135 40 62 chr9 26510177 26510903 -91351724 + MER50 LTR ERV1 1 710 -24 1148 233 43 94 chr9 26510913 26511513 -91351114 + L1MD3 LINE L1 7486 8022 -2 774 310 82 4 chr9 26511516 26511797 -91350830 + L2 LINE L2 2449 2751 -563 7738 16 0 1 chr9 26511812 26512777 -91349850 + L1PA3 LINE L1 5212 6175 0 306 233 41 0 chr9 26512808 26512881 -91349746 + MER94 DNA DNA 19 94 -40 323 402 40 17 chr9 26512920 26513216 -91349411 + L2 LINE L2 2819 3121 -192 382 279 52 65 chr9 26513401 26513555 -91349072 + L2 LINE L2 3161 3312 -1 22 0 0 0 chr9 26513695 26513717 -91348910 + AT_rich Low_complexity Low_complexity 1 22 0 1159 239 49 3 chr9 26514588 26514935 -91347692 + L1ME4a LINE L1 5513 5875 -246 24 0 0 0 chr9 26514950 26514974 -91347653 + AT_rich Low_complexity Low_complexity 1 24 0 581 357 65 42 chr9 26516647 26517123 -91345504 + LTR16C LTR ERVL 5 491 0 336 203 0 0 chr9 26517387 26517446 -91345181 + MLT1D LTR MaLR 1 59 -446 836 275 17 4 chr9 26517575 26517811 -91344816 + MLT1D LTR MaLR 267 505 0 322 326 62 0 chr9 26518384 26518513 -91344114 + MIR SINE MIR 50 186 -76 380 42 0 56 chr9 26518520 26518591 -91344036 + (TAATG)n Simple_repeat Simple_repeat 4 70 0 191 333 72 67 chr9 26519179 26519359 -91343268 + L2 LINE L2 2928 3108 -164 2735 94 23 15 chr9 26519979 26520374 -91342253 + MLT2A1 LTR ERVL 3 400 -44 202 158 26 0 chr9 26520374 26520412 -91342215 + (TA)n Simple_repeat Simple_repeat 1 39 0 377 113 0 16 chr9 26520454 26520516 -91342111 - MLT2A2 LTR ERVL -1 452 392 216 123 18 53 chr9 26520561 26520618 -91342009 + (TA)n Simple_repeat Simple_repeat 2 56 0 384 71 0 18 chr9 26520618 26520674 -91341953 + MLT2A1 LTR ERVL 399 453 0 190 297 143 22 chr9 26520893 26520984 -91341643 + MIR SINE MIR 98 199 -63 341 299 11 11 chr9 26521287 26521374 -91341253 + MER58A DNA MER1_type 4 90 -17 643 224 16 0 chr9 26521410 26521535 -91341092 + MER58A DNA MER1_type 95 221 -3 318 50 0 0 chr9 26522025 26522065 -91340562 + (TG)n Simple_repeat Simple_repeat 1 40 0 231 170 0 0 chr9 26522065 26522112 -91340515 + GA-rich Low_complexity Low_complexity 2 48 0 315 171 66 26 chr9 26522362 26522438 -91340189 - L1ME4a LINE L1 -51 6070 5992 21 36 0 0 chr9 26523583 26523611 -91339016 + AT_rich Low_complexity Low_complexity 1 28 0 205 143 48 0 chr9 26524469 26524511 -91338116 + (CAGAGA)n Simple_repeat Simple_repeat 4 47 0 38 22 0 0 chr9 26525229 26525274 -91337353 + AT_rich Low_complexity Low_complexity 1 45 0 246 290 21 11 chr9 26526383 26526476 -91336151 + L1M1 LINE L1 5364 5457 -848 274 243 47 34 chr9 26526850 26526998 -91335629 - L1ME4a LINE L1 -304 5817 5668 1747 185 7 70 chr9 26527140 26527556 -91335071 + MLT1B LTR MaLR 1 390 0 407 274 46 46 chr9 26527827 26527913 -91334714 - MIR SINE MIR 0 262 174 2015 171 43 29 chr9 26527913 26528333 -91334294 + MSTB LTR MaLR 1 426 0 407 274 46 46 chr9 26528333 26528399 -91334228 - MIR SINE MIR -87 175 110 405 308 16 38 chr9 26528479 26528664 -91333963 - MIR SINE MIR 0 262 82 260 243 54 0 chr9 26529085 26529159 -91333468 + MER116 DNA Mariner 3 80 0 1636 265 115 59 chr9 26530033 26530911 -91331716 + L1MEc LINE L1 44 970 -5426 860 284 55 32 chr9 26531239 26531822 -91330805 + L1M3d LINE L1 1203 1783 -4520 21 71 0 0 chr9 26531885 26531927 -91330700 + AT_rich Low_complexity Low_complexity 1 42 0 5968 271 69 10 chr9 26532276 26534705 -91327922 + L1M3d LINE L1 2607 5179 -1203 2855 226 29 68 chr9 26534726 26535152 -91327475 + L1ME1 LINE L1 5398 5839 -563 2037 47 0 55 chr9 26535152 26535426 -91327201 + AluY SINE Alu 39 297 -14 2855 226 29 68 chr9 26535426 26536034 -91326593 + L1ME1 LINE L1 5839 6397 -5 718 197 21 7 chr9 26538686 26538828 -91323799 - MIR SINE MIR -24 238 95 535 252 65 42 chr9 26539124 26539338 -91323289 + MER106A DNA MER1_type 1 219 -17 24 0 0 0 chr9 26539961 26539985 -91322642 + AT_rich Low_complexity Low_complexity 1 24 0 771 227 58 58 chr9 26539987 26540229 -91322398 - MIR SINE MIR -15 247 6 379 330 26 26 chr9 26540224 26540418 -91322209 - MIR SINE MIR -28 234 41 * 245 29 0 29 chr9 26540528 26540563 -91322064 + (TCTA)n Simple_repeat Simple_repeat 1 34 0 265 183 39 33 chr9 26541128 26541281 -91321346 + (TAGA)n Simple_repeat Simple_repeat 1 154 0 182 91 0 73 chr9 26541283 26541338 -91321289 + (TCTA)n Simple_repeat Simple_repeat 1 51 0 185 146 42 156 chr9 26541755 26541851 -91320776 - MIR SINE MIR -54 208 124 351 330 101 0 chr9 26543104 26543292 -91319335 - L1ME3A LINE L1 -215 5938 5732 2560 84 91 19 chr9 26543294 26543710 -91318917 + LTR7 LTR ERV1 3 448 -2 15027 104 11 6 chr9 26543712 26546184 -91316443 + HERVH LTR ERV1 1 2983 -4730 8363 106 3 3 chr9 26546194 26548268 -91314359 + HERVH LTR ERV1 3140 5149 -2564 1239 171 19 0 chr9 26548269 26548485 -91314142 + HERVH LTR ERV1 5600 5819 -1894 * 2370 100 48 13 chr9 26548483 26548862 -91313765 + HERVH LTR ERV1 7322 7713 0 2050 79 16 13 chr9 26548862 26549220 -91313407 + LTR7 LTR ERV1 1 448 -2 352 299 102 0 chr9 26549358 26549508 -91313119 - L1ME3A LINE L1 -588 5559 5394 323 356 96 10 chr9 26549509 26549821 -91312806 - L1ME3A LINE L1 -4635 1494 1156 339 280 29 34 chr9 26549873 26550080 -91312547 - L1ME3A LINE L1 -5011 1108 903 2963 113 7 13 chr9 26550154 26550834 -91311793 - L1PA8A LINE L1 -352 5779 5023 321 357 50 11 chr9 26550837 26551019 -91311608 - L1ME3A LINE L1 -5370 749 561 939 311 83 11 chr9 26552076 26552427 -91310200 - MLT2E LTR ERVL -240 388 13 333 0 0 0 chr9 26552564 26552601 -91310026 + (TAGA)n Simple_repeat Simple_repeat 1 37 0 281 318 150 18 chr9 26553546 26553766 -91308861 + MIR SINE MIR 14 262 0 480 247 41 53 chr9 26553856 26554026 -91308601 - L2 LINE L2 0 3313 3146 314 233 107 39 chr9 26554110 26554213 -91308414 + L2 LINE L2 3204 3313 0 22 56 0 0 chr9 26554315 26554351 -91308276 + AT_rich Low_complexity Low_complexity 1 36 0 778 195 40 29 chr9 26555268 26555442 -91307185 + MER45A DNA AcHobo 1 176 -2 386 272 87 74 chr9 26555444 26555756 -91306871 + LTR33 LTR ERVL 198 513 -8 24 0 0 0 chr9 26556598 26556622 -91306005 + AT_rich Low_complexity Low_complexity 1 24 0 525 281 22 45 chr9 26556624 26556802 -91305825 - MIR SINE MIR -18 244 71 189 295 76 97 chr9 26557466 26557703 -91304924 + L2 LINE L2 1830 2061 -1253 477 50 0 0 chr9 26558664 26558724 -91303903 + (TAGA)n Simple_repeat Simple_repeat 1 60 0 903 127 38 6 chr9 26559421 26559579 -91303048 + L1PA16 LINE L1 5985 6147 -19 1728 243 27 2 chr9 26559818 26560292 -91302335 + L1MC3 LINE L1 4849 5334 -812 5922 206 88 58 chr9 26560297 26562140 -91300487 + L1MC3 LINE L1 5432 7329 -456 1243 269 33 3 chr9 26562166 26562556 -91300071 - L1ME LINE L1 -351 5882 5481 1906 321 65 32 chr9 26562567 26564084 -91298543 - L1ME LINE L1 -4757 1639 74 2109 64 0 8 chr9 26564090 26564354 -91298273 - AluY SINE Alu -13 298 37 5415 59 4 4 chr9 26564363 26565063 -91297564 - L1PA5 LINE L1 0 6154 5455 561 79 0 0 chr9 26565063 26565139 -91297488 + L1PA5 LINE L1 5408 5483 -672 244 176 14 40 chr9 26565663 26565737 -91296890 + (TATAA)n Simple_repeat Simple_repeat 1 72 0 183 80 0 0 chr9 26566738 26566763 -91295864 + (A)n Simple_repeat Simple_repeat 1 25 0 316 279 0 0 chr9 26567697 26567776 -91294851 + MER5A DNA MER1_type 28 106 -83 625 271 63 14 chr9 26567815 26568036 -91294591 + MIR SINE MIR 23 254 -8 608 235 0 0 chr9 26568427 26568559 -91294068 + FLAM_C SINE Alu 2 133 0 1171 178 10 0 chr9 26568591 26568788 -91293839 + AluSg/x SINE Alu 85 283 -29 22 0 0 0 chr9 26568794 26568816 -91293811 + AT_rich Low_complexity Low_complexity 1 22 0 551 195 34 105 chr9 26568993 26569260 -91293367 + L1ME2 LINE L1 3671 3918 -2228 1902 254 129 42 chr9 26569291 26570455 -91292172 + L1ME2 LINE L1 4114 5487 -677 1940 37 0 12 chr9 26570455 26570699 -91291928 + L1PA5 LINE L1 5914 6154 0 1902 254 129 42 chr9 26570699 26571441 -91291186 + L1ME2 LINE L1 5487 6163 -1 14269 49 1 2 chr9 26571632 26573432 -91289195 - L1P LINE L1 -3330 2816 1019 7263 34 12 1 chr9 26573432 26574737 -91287890 + L1PA4 LINE L1 4839 6153 -2 2384 113 20 0 chr9 26574757 26575111 -91287516 - L1PA10 LINE L1 -7 6161 5801 257 340 39 0 chr9 26575320 26575423 -91287204 + MIR SINE MIR 35 141 -121 1559 172 0 19 chr9 26575587 26575854 -91286773 + AluSq SINE Alu 1 262 -51 256 361 110 11 chr9 26578106 26578297 -91284330 + MIR SINE MIR 29 238 -24 227 180 80 0 chr9 26579330 26579380 -91283247 + HsTC2 DNA Tc2 772 825 -1073 551 237 78 23 chr9 26579490 26579823 -91282804 - L1MB8 LINE L1 -7 6171 5782 233 238 95 0 chr9 26580014 26580077 -91282550 + L1ME4a LINE L1 5529 5597 -2188 363 23 0 0 chr9 26580378 26580422 -91282205 + (TAGA)n Simple_repeat Simple_repeat 3 46 0 242 347 0 0 chr9 26581415 26581487 -91281140 - MIR SINE MIR -18 244 173 1081 217 63 43 chr9 26582308 26582592 -91280035 - MLT1A2 LTR MaLR 0 467 162 3399 52 5 14 chr9 26582592 26583038 -91279589 - L1PA7 LINE L1 -5 6149 5708 1081 217 63 43 chr9 26583038 26583194 -91279433 - MLT1A2 LTR MaLR -305 162 11 590 87 64 10 chr9 26583896 26584372 -91278255 + (TA)n Simple_repeat Simple_repeat 1 501 0 1489 191 54 7 chr9 26584574 26584872 -91277755 - AluJb SINE Alu 0 312 1 754 175 0 0 chr9 26585272 26585392 -91277235 + FLAM_A SINE Alu 2 121 -12 363 23 0 0 chr9 26585393 26585437 -91277190 + (CATA)n Simple_repeat Simple_repeat 2 45 0 188 273 141 50 chr9 26585860 26585959 -91276668 + L2 LINE L2 3206 3313 0 21 71 0 0 chr9 26586163 26586205 -91276422 + AT_rich Low_complexity Low_complexity 1 42 0 25 31 0 0 chr9 26586925 26586957 -91275670 + AT_rich Low_complexity Low_complexity 1 32 0 2004 108 28 3 chr9 26587083 26587369 -91275258 - AluSx SINE Alu -19 293 1 210 323 30 20 chr9 26588111 26588210 -91274417 + MER5A DNA MER1_type 7 106 -83 339 314 176 6 chr9 26590306 26590618 -91272009 + L1ME4a LINE L1 5741 6105 -16 22 0 0 0 chr9 26590619 26590641 -91271986 + AT_rich Low_complexity Low_complexity 1 22 0 662 195 31 0 chr9 26590851 26590979 -91271648 + MLT1A2 LTR MaLR 1 132 -242 581 220 14 28 chr9 26590971 26591112 -91271515 + MLT1A2 LTR MaLR 236 374 0 * 345 266 11 82 chr9 26591610 26591877 -91270750 + L1MEd LINE L1 1249 1496 -5138 305 321 57 44 chr9 26591897 26592146 -91270481 + L1MEd LINE L1 1457 1765 -4832 4297 148 16 7 chr9 26592295 26593036 -91269591 + L1MC1 LINE L1 5585 6332 -1 313 306 147 48 chr9 26593156 26593577 -91269050 + L1MEd LINE L1 2135 2597 -4228 11010 249 45 55 chr9 26593788 26597837 -91264790 + L1MA4A LINE L1 3 4099 -2749 3867 180 51 13 chr9 26597810 26598902 -91263725 + L1MA4A LINE L1 5818 6861 -7 * 479 175 33 0 chr9 26598972 26599092 -91263535 + (TA)n Simple_repeat Simple_repeat 2 125 0 1822 124 4 0 chr9 26599112 26599362 -91263265 - AluSx SINE Alu -61 251 1 189 0 0 0 chr9 26599442 26599463 -91263164 + (T)n Simple_repeat Simple_repeat 1 21 0 548 259 96 7 chr9 26599469 26599739 -91262888 + L1MEd LINE L1 3220 3513 -3131 416 222 90 21 chr9 26599829 26599973 -91262654 + Charlie2a DNA MER1_type 1421 1574 -1288 818 249 92 66 chr9 26600079 26600494 -91262133 + Charlie2a DNA MER1_type 1827 2265 -597 1479 185 46 0 chr9 26600494 26600775 -91261852 + AluJo SINE Alu 1 294 -18 818 249 92 66 chr9 26600775 26600993 -91261634 + Charlie2a DNA MER1_type 2265 2476 -386 385 283 78 58 chr9 26601155 26601413 -91261214 - Charlie2a DNA MER1_type -2437 345 83 243 343 75 14 chr9 26601542 26601688 -91260939 - MER112 DNA MER1_type -1 259 105 227 284 0 0 chr9 26601706 26601773 -91260854 + (TA)n Simple_repeat Simple_repeat 2 68 0 183 80 0 0 chr9 26602357 26602382 -91260245 + (A)n Simple_repeat Simple_repeat 1 25 0 2095 110 3 0 chr9 26603683 26603992 -91258635 - AluSq SINE Alu 0 310 1 216 256 12 24 chr9 26604349 26604431 -91258196 + (TA)n Simple_repeat Simple_repeat 1 81 0 21 0 0 0 chr9 26604511 26604532 -91258095 + AT_rich Low_complexity Low_complexity 1 21 0 230 148 49 0 chr9 26606145 26606206 -91256421 + (TAATG)n Simple_repeat Simple_repeat 3 66 0 205 339 111 12 chr9 26606313 26606336 -91256291 + MIR SINE MIR 34 53 -209 2018 112 10 7 chr9 26606336 26606630 -91255997 - AluSg SINE Alu -15 295 1 205 339 111 12 chr9 26606630 26606777 -91255850 + MIR SINE MIR 53 221 -41 477 130 11 22 chr9 26606962 26607054 -91255573 + L1MC2 LINE L1 6254 6344 0 253 379 23 29 chr9 26609622 26609796 -91252831 + MIR SINE MIR 20 192 -70 3423 204 67 18 chr9 26611146 26611775 -91250852 - L1MC3 LINE L1 -21 7764 7167 1498 192 67 28 chr9 26611775 26612134 -91250493 - THE1C LTR MaLR 0 375 3 9069 156 7 35 chr9 26612136 26613760 -91248867 - THE1C-int LTR MaLR 0 1580 3 1786 132 82 28 chr9 26613763 26613936 -91248691 - THE1C LTR MaLR -1 374 212 378 0 0 0 chr9 26613936 26613978 -91248649 + (GA)n Simple_repeat Simple_repeat 1 42 0 1786 132 82 28 chr9 26613978 26614159 -91248468 - THE1C LTR MaLR -163 212 1 3423 204 67 18 chr9 26614159 26614379 -91248248 - L1MC3 LINE L1 -619 7166 6866 183 114 0 0 chr9 26614380 26614415 -91248212 + (TTAG)n Simple_repeat Simple_repeat 3 37 0 6217 258 47 16 chr9 26614452 26617633 -91244994 - L1MCc LINE L1 -1538 5403 1899 2742 256 67 32 chr9 26617640 26617837 -91244790 - L1MCc LINE L1 -5106 1316 1127 192 40 0 0 chr9 26617837 26617862 -91244765 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2742 256 67 32 chr9 26617862 26618275 -91244352 - L1MCc LINE L1 -5295 1127 730 2521 48 3 3 chr9 26618275 26618585 -91244042 + AluY SINE Alu 1 310 -1 2742 256 67 32 chr9 26618585 26618899 -91243728 - L1MCc LINE L1 -5692 730 12 312 244 90 65 chr9 26618957 26619158 -91243469 + L1MC4a LINE L1 5741 5946 -1862 410 95 0 95 chr9 26619208 26619282 -91243345 + MLT2B3 LTR ERVL 1 67 -487 2351 208 22 28 chr9 26619332 26619832 -91242795 + MLT2B3 LTR ERVL 38 534 -20 24 53 0 0 chr9 26619866 26619904 -91242723 + AT_rich Low_complexity Low_complexity 1 38 0 198 103 0 0 chr9 26619986 26620015 -91242612 + (TA)n Simple_repeat Simple_repeat 1 29 0 459 288 23 57 chr9 26621025 26621202 -91241425 + MER117 DNA MER1_type 3 173 -24 308 269 9 56 chr9 26621309 26621417 -91241210 - MIR SINE MIR 0 262 160 2563 208 56 20 chr9 26622419 26623059 -91239568 - L1MB8 LINE L1 -5 6173 5511 1089 253 54 41 chr9 26623054 26623417 -91239210 - L1M4b LINE L1 -6355 504 11 * 5618 118 36 14 chr9 26623611 26624573 -91238054 - Tigger3b DNA MER2_type 0 1231 249 1733 220 40 30 chr9 26624573 26624978 -91237649 - LTR2 LTR ERV1 0 449 41 1487 138 74 0 chr9 26625065 26625296 -91237331 - Tigger3b DNA MER2_type -983 248 1 1306 284 61 33 chr9 26625296 26626511 -91236116 + L1MEc LINE L1 1619 2836 -3379 1806 224 25 43 chr9 26626529 26626967 -91235660 - MLT2B3 LTR ERVL -124 430 1 2568 278 35 23 chr9 26626969 26627176 -91235451 + L1MEc LINE L1 240 443 -5953 1845 151 13 0 chr9 26627176 26627474 -91235153 + AluSx SINE Alu 4 305 -7 2568 278 35 23 chr9 26627474 26628207 -91234420 + L1MEc LINE L1 443 1191 -5205 * 2675 181 105 40 chr9 26628198 26628660 -91233967 + MLT-int LTR MaLR 32 545 -1190 1398 158 81 56 chr9 26628660 26628945 -91233682 + AluSx SINE Alu 1 292 -20 2675 181 105 40 chr9 26628945 26629100 -91233527 + MLT-int LTR MaLR 545 689 -1046 1702 183 19 46 chr9 26629111 26629483 -91233144 - THE1B LTR MaLR 0 364 3 2457 102 3 0 chr9 26629485 26629819 -91232808 - THE1B-int LTR MaLR 0 1580 1246 2343 222 13 4 chr9 26629823 26630287 -91232340 + MLT1A1-int LTR MaLR 1268 1735 0 1039 202 102 97 chr9 26630287 26630649 -91231978 + MLT1A1 LTR MaLR 1 364 -1 1602 216 94 107 chr9 26631997 26632946 -91229681 - LTR1B LTR ERV1 -1 1019 1 328 316 113 47 chr9 26635580 26635855 -91226772 - MLT1J1 LTR MaLR -8 438 146 22 35 0 0 chr9 26636534 26636563 -91226064 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr9 26636794 26636815 -91225812 + AT_rich Low_complexity Low_complexity 1 21 0 252 373 0 26 chr9 26636974 26637127 -91225500 + MIR SINE MIR 104 252 -10 3270 231 67 24 chr9 26687239 26688015 -91174612 + L1MEc LINE L1 1209 1950 -4265 2746 148 14 18 chr9 26688015 26688520 -91174107 + L1MA8 LINE L1 5784 6286 -5 3270 231 67 24 chr9 26688520 26689168 -91173459 + L1MEc LINE L1 1950 2694 -3521 269 172 17 0 chr9 26689176 26689234 -91173393 + L1MD1 LINE L1 1888 1946 -4594 2074 269 40 19 chr9 26689322 26690226 -91172401 + L1MD1 LINE L1 3039 3961 -2579 1903 182 48 42 chr9 26690258 26690798 -91171829 - MLT2A2 LTR ERVL 0 554 1 4753 242 48 13 chr9 26690798 26693366 -91169261 + L1MD1 LINE L1 3973 6636 0 2147 116 0 26 chr9 26693464 26693775 -91168852 - AluSx SINE Alu -7 305 3 353 328 153 6 chr9 26694476 26694653 -91167974 + MIR SINE MIR 1 203 -59 209 305 0 49 chr9 26694882 26694964 -91167663 + MIR SINE MIR 75 152 -110 1065 95 4 17 chr9 26695031 26695263 -91167364 + (TTCC)n Simple_repeat Simple_repeat 1 228 0 22 0 0 0 chr9 26695428 26695450 -91167177 + AT_rich Low_complexity Low_complexity 1 22 0 445 180 0 11 chr9 26696470 26696559 -91166068 - MER33 DNA MER1_type 0 363 276 374 247 47 9 chr9 26696553 26696664 -91165963 - MER33 DNA MER1_type -250 74 1 * 23 0 0 0 chr9 26697163 26697186 -91165441 + AT_rich Low_complexity Low_complexity 1 23 0 2421 63 3 0 chr9 26697208 26697507 -91165120 + AluSp SINE Alu 2 301 -12 32 26 0 0 chr9 26697555 26697594 -91165033 + AT_rich Low_complexity Low_complexity 1 39 0 392 319 112 30 chr9 26698189 26698421 -91164206 + L1ME LINE L1 5351 5601 -520 29 28 0 0 chr9 26698511 26698547 -91164080 + AT_rich Low_complexity Low_complexity 1 36 0 277 200 14 14 chr9 26698555 26698625 -91164002 + L1ME LINE L1 5769 5838 -283 2429 267 126 36 chr9 26698773 26700226 -91162401 + Charlie7 DNA MER1_type 725 2308 -304 24 0 0 0 chr9 26700245 26700269 -91162358 + AT_rich Low_complexity Low_complexity 1 24 0 1936 220 106 33 chr9 26701091 26701609 -91161018 + ERVL-F LTR ERVL 5201 5756 -8 313 338 35 7 chr9 26701609 26701751 -91160876 + MLT2F LTR ERVL 1 146 -517 * 464 220 0 13 chr9 26701750 26701865 -91160762 + MLT1E3 LTR MaLR 46 205 -449 378 0 0 0 chr9 26703342 26703384 -91159243 + (CA)n Simple_repeat Simple_repeat 1 42 0 201 133 0 0 chr9 26703677 26703707 -91158920 + (CATATA)n Simple_repeat Simple_repeat 3 32 0 357 145 0 0 chr9 26703797 26703859 -91158768 + (TA)n Simple_repeat Simple_repeat 1 62 0 1875 128 35 10 chr9 26703911 26704199 -91158428 + AluSq SINE Alu 1 295 -18 320 341 7 51 chr9 26704209 26704347 -91158280 - MIR SINE MIR -110 152 21 943 218 57 5 chr9 26704391 26704584 -91158043 + MER82 DNA MER2_type 445 647 -6 186 103 0 0 chr9 26705060 26705089 -91157538 + (TG)n Simple_repeat Simple_repeat 2 30 0 217 137 98 20 chr9 26706377 26706428 -91156199 - L2 LINE L2 -4 3309 3255 314 284 64 18 chr9 26706483 26706592 -91156035 + L2 LINE L2 3192 3305 -8 * 340 288 179 14 chr9 26706578 26706790 -91155837 - MIR SINE MIR -10 252 6 7252 160 11 21 chr9 26708195 26709505 -91153122 - HSMAR2 DNA Mariner -3 1299 3 272 196 18 0 chr9 26709653 26709709 -91152918 + MER63 DNA MER1_type 694 750 -311 241 211 0 19 chr9 26709710 26709762 -91152865 + MER63 DNA MER1_type 979 1029 -33 252 59 0 0 chr9 26710029 26710063 -91152564 + (CA)n Simple_repeat Simple_repeat 2 35 0 313 296 120 69 chr9 26711203 26711277 -91151350 + L2 LINE L2 3024 3093 -220 1973 144 3 0 chr9 26711277 26711569 -91151058 - AluSx SINE Alu -19 293 1 313 296 120 69 chr9 26711569 26711768 -91150859 + L2 LINE L2 3093 3311 -2 195 100 0 0 chr9 26713730 26713760 -91148867 + (CA)n Simple_repeat Simple_repeat 1 30 0 1808 166 44 14 chr9 26713968 26714330 -91148297 - THE1C LTR MaLR 0 375 3 9014 133 38 40 chr9 26714332 26715913 -91146714 - THE1C-int LTR MaLR 0 1580 3 1453 191 70 14 chr9 26715915 26716270 -91146357 - THE1C LTR MaLR 0 375 1 895 232 150 37 chr9 26716294 26716695 -91145932 + MLT1D LTR MaLR 54 499 -6 15401 167 16 4 chr9 26717472 26721136 -91141491 - L1PA11 LINE L1 -1 7611 3894 251 231 0 13 chr9 26721136 26721214 -91141413 + (TG)n Simple_repeat Simple_repeat 2 78 0 2207 98 0 3 chr9 26721228 26721523 -91141104 - AluSq SINE Alu -19 294 1 6131 238 31 28 chr9 26721523 26724616 -91138011 - L1PA11 LINE L1 -3686 3898 11 5069 121 17 10 chr9 26724736 26725510 -91137117 + MER4E LTR ERV1 1 779 0 349 85 0 0 chr9 26725623 26725670 -91136957 + LOR1b LTR ERV1 1 47 -414 2107 173 14 0 chr9 26725671 26726030 -91136597 + LOR1a LTR ERV1 134 497 0 188 392 39 10 chr9 26727274 26727376 -91135251 + MER5A DNA MER1_type 61 165 -24 367 62 62 0 chr9 26727722 26727787 -91134840 + CT-rich Low_complexity Low_complexity 4 72 0 1775 159 0 7 chr9 26727804 26728093 -91134534 - AluJb SINE Alu -25 287 1 432 275 9 0 chr9 26728844 26728953 -91133674 + MIR SINE MIR 87 196 -66 2059 233 20 39 chr9 26729108 26729618 -91133009 + MLT1D LTR MaLR 1 500 -5 373 270 58 0 chr9 26729603 26729740 -91132887 - MLT1L LTR MaLR -59 556 412 * 23 33 0 0 chr9 26729899 26729929 -91132698 + AT_rich Low_complexity Low_complexity 1 30 0 405 257 104 69 chr9 26730289 26730624 -91132003 - L1M4 LINE L1 -1488 4658 4312 222 62 0 0 chr9 26730911 26730943 -91131684 + (TG)n Simple_repeat Simple_repeat 2 33 0 713 350 104 12 chr9 26731048 26731622 -91131005 - L1MEd LINE L1 -5491 628 2 321 309 62 88 chr9 26732062 26732483 -91130144 - L1MDa LINE L1 -4476 2064 1655 22 35 0 0 chr9 26732526 26732555 -91130072 + AT_rich Low_complexity Low_complexity 1 29 0 261 317 234 35 chr9 26733246 26733729 -91128898 + L2 LINE L2 268 846 -2468 200 247 14 27 chr9 26734230 26734303 -91128324 + GA-rich Low_complexity Low_complexity 2 73 0 267 238 63 0 chr9 26734363 26734426 -91128201 - MIR SINE MIR -109 99 33 269 248 120 26 chr9 26735192 26735309 -91127318 + MER67D LTR ERV1 386 513 -1 415 218 80 58 chr9 26735494 26735682 -91126945 - MER106A DNA MER1_type -44 192 1 7220 17 0 0 chr9 26736021 26736846 -91125781 + L1PA3 LINE L1 5328 6152 -3 21 57 0 0 chr9 26736867 26736902 -91125725 + AT_rich Low_complexity Low_complexity 1 35 0 209 179 0 0 chr9 26736957 26736996 -91125631 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1761 209 64 11 chr9 26737441 26737876 -91124751 - MER39 LTR ERV1 0 707 250 237 232 188 0 chr9 26737850 26737919 -91124708 - LTR29 LTR ERV1 -534 88 7 * 1933 111 54 0 chr9 26738089 26738369 -91124258 - AluSg SINE Alu -12 298 4 272 338 92 7 chr9 26738955 26739097 -91123530 + MIR SINE MIR 29 182 -80 24 0 0 0 chr9 26739159 26739183 -91123444 + AT_rich Low_complexity Low_complexity 1 24 0 27 49 0 0 chr9 26740783 26740824 -91121803 + AT_rich Low_complexity Low_complexity 1 41 0 21 36 0 0 chr9 26740876 26740904 -91121723 + AT_rich Low_complexity Low_complexity 1 28 0 240 216 0 63 chr9 26741151 26741262 -91121365 + T-rich Low_complexity Low_complexity 3 106 0 295 301 29 0 chr9 26741331 26741434 -91121193 + MER69A DNA AcHobo 65 170 -7 26 50 0 0 chr9 26741461 26741501 -91121126 + AT_rich Low_complexity Low_complexity 1 40 0 234 321 19 19 chr9 26741620 26741726 -91120901 + LTR48B LTR ERV1 1 106 -538 993 233 56 86 chr9 26741729 26742011 -91120616 + MER39 LTR ERV1 335 605 -102 2081 118 16 0 chr9 26742011 26742316 -91120311 - AluSg SINE Alu 0 310 1 993 233 56 86 chr9 26742316 26742407 -91120220 + MER39 LTR ERV1 605 697 -10 29 60 0 0 chr9 26742479 26742529 -91120098 + AT_rich Low_complexity Low_complexity 1 50 0 400 291 77 57 chr9 26742756 26743106 -91119521 - L1MEc LINE L1 -3516 2699 2343 965 198 84 0 chr9 26743344 26743581 -91119046 - L1MD3 LINE L1 -881 7114 6858 1139 261 35 0 chr9 26743586 26743956 -91118671 - L1M LINE L1 -836 5310 4944 464 283 31 19 chr9 26743970 26744129 -91118498 + L1MEc LINE L1 553 713 -5683 1125 304 35 29 chr9 26744143 26744634 -91117993 - L1MEc LINE L1 -5869 527 34 2161 92 3 41 chr9 26746658 26746974 -91115653 - AluSc SINE Alu 0 309 6 184 337 145 0 chr9 26747324 26747407 -91115220 + L2 LINE L2 3161 3255 -17 21 57 0 0 chr9 26747852 26747887 -91114740 + AT_rich Low_complexity Low_complexity 1 35 0 186 247 62 62 chr9 26748181 26748278 -91114349 - MIR SINE MIR -64 144 48 21 57 0 0 chr9 26748648 26748683 -91113944 + AT_rich Low_complexity Low_complexity 1 35 0 4516 239 93 49 chr9 26748719 26750680 -91111947 + L1M4 LINE L1 14 2059 -4587 340 326 94 45 chr9 26750689 26750956 -91111671 + L1M4 LINE L1 2205 2484 -4162 1690 186 18 0 chr9 26751056 26751341 -91111286 - AluJo SINE Alu -19 293 4 367 274 94 86 chr9 26751364 26751747 -91110880 + MLT1I LTR MaLR 1 386 -23 24 32 0 0 chr9 26751844 26751875 -91110752 + AT_rich Low_complexity Low_complexity 1 31 0 2263 124 16 24 chr9 26752123 26752501 -91110126 + THE1C LTR MaLR 1 375 0 8927 138 28 48 chr9 26752501 26754114 -91108513 + THE1C-int LTR MaLR 1 1580 0 1940 159 21 29 chr9 26754114 26754492 -91108135 + THE1C LTR MaLR 1 375 0 193 391 0 11 chr9 26754539 26754631 -91107996 - MIR SINE MIR 0 262 172 1681 186 139 16 chr9 26755951 26756332 -91106295 - MSTA LTR MaLR 0 428 1 8412 186 30 5 chr9 26756332 26757942 -91104685 - MSTA-int LTR MaLR 0 1651 1 1828 171 127 16 chr9 26757942 26758327 -91104300 - MSTA LTR MaLR 0 428 1 2266 119 0 0 chr9 26758415 26758725 -91103902 - AluSg SINE Alu 0 310 1 208 231 26 13 chr9 26759612 26759690 -91102937 + CT-rich Low_complexity Low_complexity 2 80 0 205 315 126 42 chr9 26760312 26760455 -91102172 - L2 LINE L2 0 3313 3159 342 331 16 16 chr9 26760678 26760802 -91101825 - MIR SINE MIR -121 141 18 4316 234 50 14 chr9 26762120 26765137 -91097490 - L1M4c LINE L1 -2511 3871 800 245 357 31 16 chr9 26765500 26765629 -91096998 - L1M4c LINE L1 -5756 547 417 1241 122 11 0 chr9 26766121 26766309 -91096318 - L1PA16 LINE L1 -259 5907 5718 313 297 64 64 chr9 26766323 26766606 -91096021 - L1MEd LINE L1 -5192 939 657 271 209 15 30 chr9 26766747 26766814 -91095813 - L1MEd LINE L1 -5476 643 578 1628 222 160 33 chr9 26766866 26767279 -91095348 + MLT2B2 LTR ERVL 3 481 -34 392 37 19 0 chr9 26767279 26767333 -91095294 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 1628 222 160 33 chr9 26767333 26767374 -91095253 + MLT2B2 LTR ERVL 481 515 0 1607 186 7 0 chr9 26768968 26769278 -91093349 + AluJb SINE Alu 5 316 0 918 276 23 5 chr9 26769279 26769493 -91093134 - MER21B LTR ERV1 -631 232 15 462 187 0 0 chr9 26769501 26769592 -91093035 + (TA)n Simple_repeat Simple_repeat 2 92 0 1483 226 137 67 chr9 26769600 26770258 -91092369 + MER50 LTR ERV1 10 713 -21 1441 249 67 41 chr9 26770324 26770785 -91091842 + MER21B LTR ERV1 248 720 -143 4742 147 72 12 chr9 26770860 26771712 -91090915 + MER4D LTR ERV1 1 903 0 189 221 59 59 chr9 26771934 26772002 -91090625 + L2 LINE L2 1365 1432 -1882 249 277 116 26 chr9 26773483 26773638 -91088989 - MIR SINE MIR 0 262 94 202 295 7 81 chr9 26773688 26773837 -91088790 + MIR SINE MIR 67 204 -58 22 56 0 0 chr9 26775254 26775290 -91087337 + AT_rich Low_complexity Low_complexity 1 36 0 24 32 0 0 chr9 26775346 26775377 -91087250 + AT_rich Low_complexity Low_complexity 1 31 0 9145 139 42 40 chr9 26775808 26778549 -91084078 - L1PA13 LINE L1 -1 6162 3424 516 179 17 0 chr9 26778562 26778677 -91083950 - L1 LINE L1 -2061 4085 3963 270 353 44 15 chr9 26780653 26780789 -91081838 - MIR SINE MIR -111 151 12 1215 201 37 13 chr9 26781092 26781390 -91081237 + AluJo SINE Alu 2 306 -6 629 302 68 14 chr9 26783090 26783312 -91079315 - MIR SINE MIR -26 236 3 2261 86 0 0 chr9 26783416 26783708 -91078919 - AluY SINE Alu -19 292 1 837 329 162 30 chr9 26783718 26784543 -91078084 + L3 LINE CR1 470 1403 -174 478 114 0 0 chr9 26784960 26785030 -91077597 - AluJ/FRAM SINE Alu -16 296 227 1279 159 0 10 chr9 26785130 26785338 -91077289 - AluSx SINE Alu -106 206 1 2214 127 22 14 chr9 26785395 26785756 -91076871 + THE1B LTR MaLR 1 364 0 320 328 78 36 chr9 26786050 26786242 -91076385 - MIR SINE MIR -7 255 56 342 0 0 0 chr9 26786755 26786793 -91075834 + (CA)n Simple_repeat Simple_repeat 2 39 0 227 284 12 25 chr9 26787230 26787311 -91075316 + MIR3 SINE MIR 125 204 -4 218 297 109 10 chr9 26787440 26787541 -91075086 + L2 LINE L2 3203 3313 0 243 0 0 0 chr9 26787844 26787871 -91074756 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 247 169 24 84 chr9 26788189 26788272 -91074355 - MIR SINE MIR -71 191 114 21 57 0 0 chr9 26790313 26790348 -91072279 + AT_rich Low_complexity Low_complexity 1 35 0 214 379 40 0 chr9 26790849 26790973 -91071654 - MIR3 SINE MIR -43 165 37 24 32 0 0 chr9 26791480 26791511 -91071116 + AT_rich Low_complexity Low_complexity 1 31 0 351 0 0 0 chr9 26791631 26791670 -91070957 + (GA)n Simple_repeat Simple_repeat 1 39 0 518 304 42 35 chr9 26791827 26792087 -91070540 - MIR SINE MIR 0 262 1 234 383 74 0 chr9 26793421 26793583 -91069044 - MIR SINE MIR 0 262 89 1625 170 30 7 chr9 26794002 26794302 -91068325 + AluJb SINE Alu 1 307 -5 454 61 0 192 chr9 26794781 26794823 -91067804 + MADE1 DNA Mariner 1 49 -31 821 36 0 9 chr9 26794823 26794933 -91067694 + (TTTTA)n Simple_repeat Simple_repeat 2 110 0 1868 75 43 53 chr9 26794935 26795217 -91067410 - AluY SINE Alu -30 281 3 454 61 0 192 chr9 26795217 26795270 -91067357 + MADE1 DNA Mariner 50 80 0 396 344 109 0 chr9 26795569 26795761 -91066866 + MIR SINE MIR 47 259 -3 339 277 77 32 chr9 26796168 26796323 -91066304 - MIR SINE MIR -68 194 33 4307 184 22 35 chr9 26796895 26797720 -91064907 - MER21B LTR ERV1 -49 814 1 1970 151 0 3 chr9 26798066 26798370 -91064257 - AluSx SINE Alu -9 303 1 21 0 0 0 chr9 26798522 26798543 -91064084 + AT_rich Low_complexity Low_complexity 1 21 0 1183 173 106 15 chr9 26798688 26799043 -91063584 + MSTC LTR MaLR 13 428 0 249 255 0 0 chr9 26799882 26799929 -91062698 + MIR3 SINE MIR 149 195 -13 407 354 35 31 chr9 26801409 26801663 -91060964 - MIR SINE MIR -6 256 2 356 191 79 34 chr9 26801955 26802044 -91060583 - MIR SINE MIR -50 212 120 193 233 33 89 chr9 26802967 26803057 -91059570 - MIR SINE MIR -72 190 106 424 231 0 0 chr9 26803131 26803209 -91059418 + Tigger3(Golem) DNA MER2_type 2 79 -2950 * 917 199 20 15 chr9 26803189 26803385 -91059242 + Tigger3(Golem) DNA MER2_type 2831 3027 -2 868 259 62 10 chr9 26803958 26804247 -91058380 + MER46C DNA MER2_type 5 308 -30 395 305 107 16 chr9 26804628 26804815 -91057812 + MIR SINE MIR 59 262 0 239 347 138 0 chr9 26805955 26806122 -91056505 + MIR SINE MIR 67 256 -6 563 335 8 20 chr9 26806336 26806581 -91056046 - MIR SINE MIR 0 262 21 1955 231 41 12 chr9 26806661 26807150 -91055477 - MLT1D LTR MaLR 0 505 3 274 221 86 36 chr9 26808863 26809003 -91053624 + L1MC5 LINE L1 7504 7650 -311 213 121 0 0 chr9 26809182 26809215 -91053412 + (CA)n Simple_repeat Simple_repeat 1 33 0 254 266 17 121 chr9 26809329 26809502 -91053125 + MIR SINE MIR 61 215 -47 354 250 9 43 chr9 26810220 26810236 -91052391 - L1MA10 LINE L1 -52 6282 6267 2724 242 34 37 chr9 26810236 26811053 -91051574 - L1ME1 LINE L1 -55 6111 5297 262 178 37 37 chr9 26811195 26811302 -91051325 + L1MEc LINE L1 1004 1110 -5286 1047 196 19 44 chr9 26811308 26811578 -91051049 - L1MA10 LINE L1 -2026 4120 3858 * 4980 201 38 28 chr9 26811573 26812910 -91049717 + L1MA10 LINE L1 4126 5448 -886 1971 137 3 6 chr9 26812910 26813223 -91049404 + AluSq SINE Alu 1 312 -1 4980 201 38 28 chr9 26813223 26813404 -91049223 + L1MA10 LINE L1 5448 5626 -708 3687 126 11 28 chr9 26813404 26814014 -91048613 - MER4A LTR ERV1 0 600 1 4980 201 38 28 chr9 26814014 26814676 -91047951 + L1MA10 LINE L1 5626 6323 -11 296 195 58 35 chr9 26814783 26814870 -91047757 + L1MEc LINE L1 1789 1877 -4519 * 1968 257 65 48 chr9 26814868 26815611 -91047016 - L1MEc LINE L1 -5608 788 34 28 29 0 0 chr9 26816671 26816706 -91045921 + AT_rich Low_complexity Low_complexity 1 35 0 304 244 12 0 chr9 26817445 26817527 -91045100 - L1MC4a LINE L1 -1875 5933 5851 268 274 42 32 chr9 26818215 26818310 -91044317 + L2 LINE L2 3208 3303 -10 21 0 0 0 chr9 26819295 26819316 -91043311 + AT_rich Low_complexity Low_complexity 1 21 0 425 338 87 14 chr9 26819834 26820041 -91042586 - MIR SINE MIR -3 259 38 557 259 85 36 chr9 26820116 26820338 -91042289 - MIR SINE MIR 0 262 31 825 185 67 0 chr9 26820408 26820586 -91042041 - L1MA4 LINE L1 0 6300 6111 487 282 106 12 chr9 26820608 26820778 -91041849 - MIR SINE MIR 0 262 77 269 365 73 7 chr9 26821227 26821364 -91041263 + MIR SINE MIR 51 196 -66 641 246 63 34 chr9 26821503 26821710 -91040917 + MIR SINE MIR 50 262 0 2513 50 0 0 chr9 26826488 26826788 -91035839 - AluY SINE Alu -9 302 3 265 299 43 22 chr9 26827227 26827411 -91035216 - L1M4 LINE L1 -3528 2618 2431 21 82 0 0 chr9 26827824 26827873 -91034754 + AT_rich Low_complexity Low_complexity 1 49 0 229 213 64 32 chr9 26827879 26827973 -91034654 - MER103 DNA DNA -4 162 66 1033 181 6 0 chr9 26829125 26829296 -91033331 + MER2 DNA MER2_type 2 173 -172 183 162 0 0 chr9 26829362 26829399 -91033228 + T-rich Low_complexity Low_complexity 1 37 0 1029 179 0 6 chr9 26829406 26829585 -91033042 - AluJb SINE Alu -124 188 11 407 195 24 12 chr9 26829622 26829704 -91032923 + MER2 DNA MER2_type 263 345 0 500 301 76 65 chr9 26830229 26830505 -91032122 + MLT1K LTR MaLR 310 588 0 428 344 23 0 chr9 26831983 26832114 -91030513 - MIR3 SINE MIR -11 197 64 22 0 0 0 chr9 26834177 26834199 -91028428 + AT_rich Low_complexity Low_complexity 1 22 0 336 148 0 0 chr9 26835564 26835625 -91027002 + (TC)n Simple_repeat Simple_repeat 1 61 0 7052 6 0 0 chr9 26835983 26836776 -91025851 - L1HS LINE L1 0 6155 5363 1960 29 0 0 chr9 26836775 26837020 -91025607 + L1HS LINE L1 5106 5350 -796 * 348 130 19 0 chr9 26837204 26837258 -91025369 - Charlie8 DNA MER1_type -1003 1414 1360 2108 97 4 0 chr9 26837361 26837640 -91024987 - AluSg SINE Alu -28 282 3 204 314 186 17 chr9 26838208 26838326 -91024301 + MIR3 SINE MIR 34 171 -37 227 304 169 30 chr9 26838485 26838722 -91023905 - L2 LINE L2 -1020 2294 2025 222 128 0 0 chr9 26939214 26939253 -90923374 + (TTCC)n Simple_repeat Simple_repeat 1 39 0 420 264 28 9 chr9 26939265 26939371 -90923256 - L2 LINE L2 -14 3299 3192 191 373 144 5 chr9 26939428 26939629 -90922998 + L2 LINE L2 2612 2840 -474 207 368 11 0 chr9 26939722 26939817 -90922810 + L2 LINE L2 2946 3041 -231 2150 113 3 0 chr9 26940142 26940435 -90922192 - AluSg SINE Alu -16 294 1 22 0 0 0 chr9 26940444 26940466 -90922161 + AT_rich Low_complexity Low_complexity 1 22 0 367 273 49 55 chr9 26941016 26941199 -90921428 + L3 LINE CR1 1253 1434 -143 21 36 0 0 chr9 26941627 26941655 -90920972 + AT_rich Low_complexity Low_complexity 1 28 0 970 251 69 30 chr9 26943375 26944361 -90918266 + L1MC4 LINE L1 5803 6847 -1195 3600 252 56 28 chr9 26944514 26945664 -90916963 + L1MC4a LINE L1 6627 7808 0 355 310 50 50 chr9 26946034 26946176 -90916451 + L1M4 LINE L1 2337 2481 -3665 968 237 7 106 chr9 26946176 26946581 -90916046 - MLT1A1 LTR MaLR 0 365 1 355 310 50 50 chr9 26946581 26946680 -90915947 + L1M4 LINE L1 2480 2578 -3568 28 29 0 0 chr9 26947315 26947350 -90915277 + AT_rich Low_complexity Low_complexity 1 35 0 2075 114 0 7 chr9 26947528 26947825 -90914802 - AluSc SINE Alu -14 295 1 1923 265 74 23 chr9 26950811 26951653 -90910974 + L1ME3A LINE L1 5258 6122 -48 764 132 18 0 chr9 26951796 26951910 -90910717 - MSTD LTR MaLR 0 396 281 35 24 0 0 chr9 26952371 26952413 -90910214 + AT_rich Low_complexity Low_complexity 1 42 0 2249 95 7 0 chr9 26952773 26953079 -90909548 + AluY SINE Alu 1 308 -3 334 320 35 23 chr9 26954362 26954618 -90908009 - MIR SINE MIR -2 260 2 779 242 166 39 chr9 26955280 26955862 -90906765 - LTR50 LTR ERVL 0 795 43 1188 155 183 68 chr9 26955862 26956184 -90906443 + THE1C LTR MaLR 4 373 -2 207 0 0 0 chr9 26956270 26956293 -90906334 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 834 345 92 22 chr9 26956688 26956836 -90905791 - L2 LINE L2 -4 3309 3173 1021 205 149 13 chr9 26956836 26957138 -90905489 - MER2 DNA MER2_type 0 344 2 834 345 92 22 chr9 26957138 26957505 -90905122 - L2 LINE L2 -140 3173 2764 477 296 44 6 chr9 26957651 26957810 -90904817 + MLT1I LTR MaLR 243 407 -2 288 91 0 0 chr9 26958592 26958636 -90903991 + (TC)n Simple_repeat Simple_repeat 1 44 0 1365 176 15 27 chr9 26958640 26958901 -90903726 - AluJo SINE Alu -30 282 25 197 275 145 0 chr9 26958967 26959036 -90903591 + L2 LINE L2 3185 3263 -9 183 80 0 0 chr9 26959037 26959062 -90903565 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 191 265 176 59 chr9 26960791 26960927 -90901700 + MIR SINE MIR 1 152 -110 218 205 0 0 chr9 26961457 26961496 -90901131 + GA-rich Low_complexity Low_complexity 2 40 0 290 302 43 17 chr9 26962199 26962315 -90900312 - MIR SINE MIR -68 194 76 204 315 0 51 chr9 26962349 26962460 -90900167 - MIR SINE MIR -100 108 8 2377 59 0 3 chr9 26962642 26962945 -90899682 + AluY SINE Alu 1 302 -9 4987 204 20 9 chr9 26962981 26964052 -90898575 - Tigger6a DNA MER2_type 0 1083 1 21 0 0 0 chr9 26964145 26964166 -90898461 + AT_rich Low_complexity Low_complexity 1 21 0 788 201 0 0 chr9 26964224 26964363 -90898264 + FRAM SINE Alu 8 146 -30 383 294 8 25 chr9 26964691 26964810 -90897817 - MIR SINE MIR -61 201 85 491 355 150 24 chr9 26965731 26966924 -90895703 + L2 LINE L2 1430 2772 -542 185 311 144 0 chr9 26967219 26967309 -90895318 + L2 LINE L2 2950 3052 -261 1777 150 3 29 chr9 26967312 26967618 -90895009 + AluSx SINE Alu 1 298 -14 619 280 57 14 chr9 26970028 26970251 -90892376 + MIR SINE MIR 16 245 -17 307 271 10 21 chr9 26970467 26970563 -90892064 - MLT1H1 LTR MaLR -43 512 418 289 288 12 12 chr9 26970792 26970872 -90891755 - MLT1H1 LTR MaLR -374 181 102 1979 103 43 0 chr9 26970925 26971207 -90891420 + AluSg SINE Alu 5 298 -12 10031 79 3 2 chr9 26971439 26972790 -90889837 + L1P LINE L1 6 1357 -4789 2406 53 0 3 chr9 26973312 26973614 -90889013 + AluY SINE Alu 1 301 -10 286 257 64 46 chr9 26973704 26973813 -90888814 + MER110-int LTR ERV1 1790 1900 -2747 285 292 0 0 chr9 26973850 26973922 -90888705 + MER110-int LTR ERV1 2000 2071 -2576 1173 323 72 20 chr9 26974105 26974616 -90888011 + MER110-int LTR ERV1 2254 2791 -1856 305 159 16 0 chr9 26974958 26975021 -90887606 + GA-rich Low_complexity Low_complexity 3 66 0 858 213 96 106 chr9 26975137 26975734 -90886893 + LTR49 LTR ERV1 5 595 0 242 345 69 9 chr9 26975812 26975928 -90886699 - MER5A DNA MER1_type -64 125 3 1349 269 76 21 chr9 26976149 26976676 -90885951 + LTR38 LTR ERV1 1 556 0 24 0 0 0 chr9 26976913 26976937 -90885690 + AT_rich Low_complexity Low_complexity 1 24 0 901 202 30 103 chr9 26977708 26978010 -90884617 - MER67D LTR ERV1 -234 280 1 353 318 47 12 chr9 26979055 26979225 -90883402 + MIR SINE MIR 42 210 -52 369 43 0 0 chr9 26979630 26979677 -90882950 + (TG)n Simple_repeat Simple_repeat 1 47 0 1346 175 18 119 chr9 26980110 26980509 -90882118 - MLT1A1 LTR MaLR 0 365 13 698 205 16 0 chr9 26980527 26980654 -90881973 + Tigger1 DNA MER2_type 15 143 -2275 1024 163 48 14 chr9 26980657 26980866 -90881761 + Tigger1 DNA MER2_type 2203 2418 0 22 56 0 0 chr9 26981362 26981398 -90881229 + AT_rich Low_complexity Low_complexity 1 36 0 199 314 43 14 chr9 26982515 26982585 -90880042 + MER5B DNA MER1_type 3 74 -104 6995 32 0 2 chr9 26982883 26983719 -90878908 - L1PA3 LINE L1 0 6155 5322 280 77 0 0 chr9 26983697 26983736 -90878891 + L1P LINE L1 2680 2718 -3428 * 393 264 0 0 chr9 26983833 26983920 -90878707 + MER81 DNA DNA 1 87 -27 261 182 45 27 chr9 26984826 26984936 -90877691 + (CATATA)n Simple_repeat Simple_repeat 2 113 0 539 279 110 43 chr9 26984969 26985154 -90877473 - L1ME LINE L1 -519 5645 5474 222 37 0 0 chr9 26985154 26985181 -90877446 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2254 92 0 0 chr9 26985184 26985476 -90877151 - AluSg SINE Alu -18 292 1 539 279 110 43 chr9 26985476 26985928 -90876699 - L1ME LINE L1 -691 5473 4962 2152 201 50 7 chr9 26985928 26986371 -90876256 + MLT1C LTR MaLR 1 462 -5 1972 151 22 22 chr9 26986431 26986795 -90875832 - THE1B LTR MaLR 0 364 1 331 300 15 10 chr9 26987118 26987318 -90875309 - L1ME LINE L1 -1542 4604 4404 21 36 0 0 chr9 26988733 26988761 -90873866 + AT_rich Low_complexity Low_complexity 1 28 0 35 54 0 0 chr9 26988961 26989017 -90873610 + AT_rich Low_complexity Low_complexity 1 56 0 260 328 46 30 chr9 26989568 26989699 -90872928 - L3b LINE CR1 -4 1579 1447 26 30 0 0 chr9 26990059 26990092 -90872535 + AT_rich Low_complexity Low_complexity 1 33 0 198 403 14 14 chr9 26990216 26990360 -90872267 + L2 LINE L2 2307 2450 -864 491 315 107 0 chr9 26990391 26990569 -90872058 - MIR SINE MIR -38 224 28 381 258 177 0 chr9 26990788 26990912 -90871715 - MIR SINE MIR -6 256 111 24 0 0 0 chr9 26992262 26992286 -90870341 + AT_rich Low_complexity Low_complexity 1 24 0 330 266 138 9 chr9 26992994 26993103 -90869524 - L2 LINE L2 -24 3289 3167 284 129 71 24 chr9 26995656 26995741 -90866886 + CT-rich Low_complexity Low_complexity 3 91 0 1286 222 116 6 chr9 26995907 26996218 -90866409 + MLT1B-int LTR MaLR 955 1299 -72 559 337 64 7 chr9 26996192 26996388 -90866239 - L1MDa LINE L1 -5735 805 431 * 297 225 67 22 chr9 26996393 26996482 -90866145 - L1MDa LINE L1 -6069 471 379 * 355 196 11 22 chr9 26996479 26996571 -90866056 + MLT1B-int LTR MaLR 1644 1734 -1 1522 209 59 17 chr9 26996572 26996927 -90865700 + MLT1B LTR MaLR 1 370 -20 6211 243 81 31 chr9 26996939 26999278 -90863349 + L1MDa LINE L1 123 2718 -3822 1065 278 58 14 chr9 26999398 26999847 -90862780 + L1MDa LINE L1 3325 3753 -2787 1411 184 26 43 chr9 26999847 27000151 -90862476 - AluJo SINE Alu -13 299 1 1065 278 58 14 chr9 27000151 27000164 -90862463 + L1MDa LINE L1 3753 3764 -2776 354 23 0 0 chr9 27000164 27000207 -90862420 + (CA)n Simple_repeat Simple_repeat 2 44 0 1065 278 58 14 chr9 27000207 27000368 -90862259 + L1MDa LINE L1 3764 3976 -2564 822 312 47 64 chr9 27000383 27000835 -90861792 + L1M2a LINE L1 1 444 -6724 * 3158 266 84 31 chr9 27000809 27002760 -90859867 + L1M2a LINE L1 1568 3222 -3947 2882 158 20 2 chr9 27002786 27003285 -90859342 + L1PA8 LINE L1 1 508 -5367 23262 148 10 70 chr9 27003285 27009362 -90853265 + L1PA8 LINE L1 771 6487 0 3023 257 88 6 chr9 27009357 27010454 -90852173 + L1M2a LINE L1 3223 4409 -2758 * 269 118 0 227 chr9 27010455 27010565 -90852062 + MLT2C2 LTR ERVL 407 464 0 289 327 59 56 chr9 27010575 27010881 -90851746 - HAL1 LINE L1 -952 1555 1249 388 248 32 89 chr9 27010941 27011098 -90851529 - MLT1I LTR MaLR -235 174 27 468 310 105 44 chr9 27011458 27011868 -90850759 - HAL1 LINE L1 -2044 463 29 29 47 0 0 chr9 27012135 27012178 -90850449 + AT_rich Low_complexity Low_complexity 1 43 0 217 341 80 0 chr9 27012239 27012327 -90850300 + L2 LINE L2 3185 3279 -34 551 313 185 40 chr9 27012708 27012828 -90849799 - L2 LINE L2 -5 3308 3207 3681 109 79 0 chr9 27012828 27013386 -90849241 - LTR43 LTR ERV1 0 602 1 551 313 185 40 chr9 27013386 27013781 -90848846 - L2 LINE L2 -106 3207 2722 305 293 29 69 chr9 27014081 27014255 -90848372 + L1M2a LINE L1 4862 5028 -2139 514 237 258 42 chr9 27014330 27014385 -90848242 + MLT1E1 LTR MaLR 3 45 -609 315 0 0 0 chr9 27014385 27014420 -90848207 + (CA)n Simple_repeat Simple_repeat 2 36 0 514 237 258 42 chr9 27014420 27014554 -90848073 + MLT1E1 LTR MaLR 45 233 -421 478 184 10 0 chr9 27014560 27014658 -90847969 + MLT1E3 LTR MaLR 526 624 0 191 320 148 23 chr9 27014941 27015197 -90847430 + L2 LINE L2 3020 3307 -6 2006 184 6 0 chr9 27017870 27018234 -90844393 - MER47A DNA MER2_type 0 366 1 215 173 19 0 chr9 27018911 27018963 -90843664 + (CA)n Simple_repeat Simple_repeat 2 54 0 230 266 101 46 chr9 27020075 27020184 -90842443 + MIR SINE MIR 110 224 -38 424 248 39 39 chr9 27020603 27020756 -90841871 - MER5A DNA MER1_type 0 189 37 321 301 46 64 chr9 27020605 27020778 -90841849 + MER5A DNA MER1_type 17 186 -3 * 23 0 0 0 chr9 27021948 27021971 -90840656 + AT_rich Low_complexity Low_complexity 1 23 0 300 263 64 52 chr9 27022067 27022267 -90840360 + MIR SINE MIR 15 221 -41 309 51 0 0 chr9 27022576 27022615 -90840012 + (CA)n Simple_repeat Simple_repeat 2 40 0 278 146 0 0 chr9 27024152 27024193 -90838434 - tRNA-Lys-AAG tRNA tRNA -34 42 2 413 221 170 78 chr9 27024430 27024765 -90837862 + L1ME3A LINE L1 5735 6100 -70 2232 105 0 7 chr9 27025136 27025431 -90837196 - AluSg SINE Alu -17 293 1 258 318 39 84 chr9 27025460 27025614 -90837013 + L2 LINE L2 3124 3270 -2 239 48 0 0 chr9 27025859 27025901 -90836726 - LTR66 LTR ERVL -171 439 398 239 48 0 0 chr9 27025869 27025911 -90836716 + LTR66 LTR ERVL 398 439 -171 327 311 0 0 chr9 27025919 27026009 -90836618 + L1MC4 LINE L1 6614 6703 -1339 225 154 0 0 chr9 27026009 27026048 -90836579 + (TG)n Simple_repeat Simple_repeat 1 39 0 429 70 0 0 chr9 27026048 27026105 -90836522 + (TA)n Simple_repeat Simple_repeat 1 57 0 27 49 0 0 chr9 27028198 27028239 -90834388 + AT_rich Low_complexity Low_complexity 1 41 0 357 295 84 54 chr9 27028597 27028858 -90833769 - L1MDa LINE L1 -4702 1838 1570 1196 248 114 72 chr9 27028892 27029460 -90833167 - MLT1E2 LTR MaLR -31 594 2 1259 264 88 35 chr9 27029466 27030094 -90832533 - L1MDa LINE L1 -5105 1616 956 472 300 8 0 chr9 27030108 27030238 -90832389 - L2 LINE L2 -947 2367 2237 835 215 58 6 chr9 27030373 27030545 -90832082 + MER5A DNA MER1_type 7 187 -2 211 309 41 31 chr9 27030591 27030688 -90831939 - L2 LINE L2 -243 3029 2932 1468 111 214 12 chr9 27031878 27032130 -90830497 - AluSg1 SINE Alu -6 303 1 333 318 97 41 chr9 27034070 27034302 -90828325 + MLT1L LTR MaLR 201 465 -150 1724 138 34 18 chr9 27034302 27034629 -90827998 + L1MA9 LINE L1 5979 6310 -2 333 318 97 41 chr9 27034629 27034789 -90827838 + MLT1L LTR MaLR 465 615 0 1398 245 50 67 chr9 27035602 27036157 -90826470 - L1ME3 LINE L1 -14 6148 5603 577 258 0 7 chr9 27036209 27036360 -90826267 - L1ME3 LINE L1 -1292 4854 4705 439 240 13 20 chr9 27036439 27036589 -90826038 - L1ME3 LINE L1 -1567 4579 4431 2613 45 0 0 chr9 27036604 27036915 -90825712 - AluY SINE Alu 0 311 1 334 279 81 54 chr9 27036923 27037145 -90825482 - L1ME3 LINE L1 -1979 4167 3940 597 329 35 16 chr9 27037200 27037513 -90825114 + L1MEc LINE L1 92 410 -5986 1579 245 96 10 chr9 27037597 27038087 -90824540 + LTR48B LTR ERV1 108 639 -5 1000 219 76 106 chr9 27038108 27038159 -90824468 - MLT1A2 LTR MaLR -5 369 318 1969 161 21 15 chr9 27038159 27038494 -90824133 + MER1B DNA MER1_type 1 337 0 1000 219 76 106 chr9 27038494 27038799 -90823828 - MLT1A2 LTR MaLR -56 318 24 3870 222 19 9 chr9 27040236 27041243 -90821384 + L1 LINE L1 2861 3877 -2269 5693 138 196 9 chr9 27041363 27042477 -90820150 - L1PBa LINE L1 -4903 1960 639 1100 190 0 0 chr9 27042474 27042674 -90819953 - L1PBa LINE L1 -6661 202 3 * 22 35 0 0 chr9 27043451 27043480 -90819147 + AT_rich Low_complexity Low_complexity 1 29 0 2850 151 86 10 chr9 27044498 27045201 -90817426 - L1PBa LINE L1 -3733 3129 2372 1635 197 45 28 chr9 27045681 27045831 -90816796 + L1M1 LINE L1 2890 3036 -4529 1447 164 80 52 chr9 27045831 27046196 -90816431 - THE1C LTR MaLR 0 375 1 1635 197 45 28 chr9 27046196 27046761 -90815866 + L1M1 LINE L1 3036 3939 -3626 9431 130 30 6 chr9 27046861 27048287 -90814340 - THE1B-int LTR MaLR -120 1460 1 1942 175 11 16 chr9 27048287 27048653 -90813974 - THE1B LTR MaLR 0 364 1 1929 174 0 0 chr9 27049243 27049554 -90813073 - AluJo SINE Alu -1 311 1 1961 174 93 53 chr9 27049664 27050056 -90812571 - MER67D LTR ERV1 0 514 96 1616 122 122 7 chr9 27050056 27050327 -90812300 + AluSx SINE Alu 1 302 0 1961 174 93 53 chr9 27050327 27050428 -90812199 - MER67D LTR ERV1 -418 96 1 302 312 136 7 chr9 27050510 27050664 -90811963 - MIR SINE MIR -84 178 5 338 313 68 0 chr9 27050982 27051145 -90811482 - MIR SINE MIR 0 262 89 368 258 0 10 chr9 27051291 27051388 -90811239 + MER34 LTR ERV1 1 96 -446 1598 227 91 28 chr9 27051393 27051856 -90810771 + LTR48B LTR ERV1 151 642 -2 24 85 0 0 chr9 27052048 27052107 -90810520 + AT_rich Low_complexity Low_complexity 1 59 0 622 237 131 44 chr9 27052271 27052773 -90809854 + LTR48 LTR ERV1 157 787 0 210 71 0 0 chr9 27052874 27052902 -90809725 + (A)n Simple_repeat Simple_repeat 1 28 0 299 289 22 0 chr9 27053121 27053211 -90809416 + MLT1I LTR MaLR 19 110 -299 388 254 192 8 chr9 27053291 27053421 -90809206 + MER5A DNA MER1_type 30 183 -6 548 240 101 29 chr9 27053443 27053651 -90808976 + MLT1I LTR MaLR 186 408 -1 379 281 79 0 chr9 27054613 27054727 -90807900 - L2 LINE L2 0 3313 3191 4887 89 43 98 chr9 27055665 27056539 -90806088 - LTR12 LTR ERV1 0 826 1 560 306 81 67 chr9 27057205 27057502 -90805125 - LTR16C LTR ERVL 0 491 191 6719 70 3 26 chr9 27057512 27058677 -90803950 - L1PA7 LINE L1 0 6154 5013 2319 95 0 0 chr9 27058677 27058972 -90803655 - AluY SINE Alu -14 297 3 6719 70 3 26 chr9 27058972 27059495 -90803132 - L1PA7 LINE L1 -1141 5013 4479 995 188 53 41 chr9 27059842 27060161 -90802466 - MER33 DNA MER1_type -1 323 1 1420 263 126 17 chr9 27060527 27060994 -90801633 + MLT1F LTR MaLR 25 542 0 428 273 50 25 chr9 27062178 27062339 -90800288 - MIR SINE MIR -90 172 8 1597 52 10 0 chr9 27062481 27062674 -90799953 + AluY SINE Alu 99 293 -18 2093 130 3 0 chr9 27063208 27063508 -90799119 - AluJb SINE Alu -7 305 5 377 302 37 73 chr9 27064503 27064831 -90797796 + MLT1H LTR MaLR 53 368 -181 1838 107 0 0 chr9 27065050 27065313 -90797314 - AluSx SINE Alu 0 310 48 21 0 0 0 chr9 27065382 27065403 -90797224 + AT_rich Low_complexity Low_complexity 1 21 0 583 319 117 36 chr9 27066578 27066938 -90795689 - L2 LINE L2 -5 3308 2920 233 212 106 15 chr9 27067228 27067294 -90795333 - LTR33A LTR ERVL 0 523 452 229 240 106 87 chr9 27067355 27067459 -90795168 - MLT2E LTR ERVL -491 137 32 2611 310 74 23 chr9 27067894 27068009 -90794618 - ERVL LTR ERVL -431 5333 5225 1973 176 12 6 chr9 27068009 27068355 -90794272 + MER7A DNA MER2_type 1 346 0 2611 310 74 23 chr9 27068355 27069371 -90793256 - ERVL LTR ERVL -539 5225 4144 1944 181 109 8 chr9 27069622 27070097 -90792530 - L1MA9 LINE L1 -1 6311 5789 6400 141 34 13 chr9 27070106 27071564 -90791063 - L1MA2 LINE L1 0 7723 6243 981 198 28 4 chr9 27071556 27071803 -90790824 - L1MA2 LINE L1 -2972 4593 4341 * 2847 131 27 17 chr9 27071837 27072317 -90790310 - L1PA13 LINE L1 0 6163 5679 847 76 8 0 chr9 27072317 27072435 -90790192 + L1P4 LINE L1 5609 5727 -436 * 17972 171 67 29 chr9 27072432 27074181 -90788446 - L1MA2 LINE L1 -3215 4350 2669 1966 122 15 0 chr9 27074181 27074452 -90788175 + AluSx SINE Alu 2 276 -36 17972 171 67 29 chr9 27074452 27076874 -90785753 - L1MA2 LINE L1 -4896 2669 15 3791 178 42 11 chr9 27076890 27078170 -90784457 - L1M2 LINE L1 -514 5798 4486 1799 170 3 3 chr9 27078174 27078462 -90784165 - AluSx SINE Alu -24 288 1 14451 162 41 14 chr9 27078847 27081493 -90781134 - Tigger2 DNA MER2_type 0 2718 2 213 180 16 16 chr9 27081499 27081560 -90781067 + (TA)n Simple_repeat Simple_repeat 1 61 0 1296 314 55 49 chr9 27081560 27082271 -90780356 - ERVL LTR ERVL -2180 3474 2760 2343 81 7 3 chr9 27083994 27084304 -90778323 + AluY SINE Alu 1 311 0 180 152 0 0 chr9 27084596 27084629 -90777998 + (TAA)n Simple_repeat Simple_repeat 1 33 0 26 0 0 0 chr9 27084778 27084804 -90777823 + AT_rich Low_complexity Low_complexity 1 26 0 583 349 56 45 chr9 27085338 27085716 -90776911 - L2 LINE L2 -1 3271 2890 228 333 42 33 chr9 27086238 27086358 -90776269 - MIR SINE MIR -10 252 132 22 35 0 0 chr9 27087159 27087188 -90775439 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr9 27089223 27089245 -90773382 + AT_rich Low_complexity Low_complexity 1 22 0 328 224 82 12 chr9 27089791 27089876 -90772751 - MER91C DNA MER1_type -1 139 49 263 284 71 57 chr9 27090197 27090338 -90772289 - MIR SINE MIR -109 153 11 2602 165 8 4 chr9 27091258 27091731 -90770896 + L1MA5 LINE L1 5826 6300 0 243 170 0 0 chr9 27093377 27093424 -90769203 + A-rich Low_complexity Low_complexity 1 47 0 39 22 0 0 chr9 27094277 27094323 -90768304 + AT_rich Low_complexity Low_complexity 1 46 0 967 298 44 16 chr9 27094681 27095044 -90767583 + L1MEd LINE L1 11 383 -5736 517 311 34 42 chr9 27095155 27095512 -90767115 + L1MEd LINE L1 532 885 -5234 585 134 21 10 chr9 27095613 27095710 -90766917 + MER4A LTR ERV1 1 98 -566 1842 139 6 24 chr9 27095710 27096061 -90766566 + MER4A LTR ERV1 261 664 0 7796 123 94 49 chr9 27096064 27098393 -90764234 + MER4A-int LTR ERV1 1 2486 -4112 1159 201 75 0 chr9 27098397 27098636 -90763991 - LTR8 LTR ERV1 -434 257 1 2896 158 121 59 chr9 27098636 27098694 -90763933 + MER4A-int LTR ERV1 2737 2790 -3808 193 28 0 56 chr9 27098694 27098730 -90763897 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 2896 158 121 59 chr9 27098730 27099572 -90763055 + MER4A-int LTR ERV1 2790 3693 -2905 * 15023 112 44 17 chr9 27099555 27102149 -90760478 + MER4A-int LTR ERV1 3838 6593 -5 585 143 0 0 chr9 27102163 27102254 -90760373 + MER4A LTR ERV1 8 98 -566 1892 131 3 23 chr9 27102254 27102596 -90760031 + MER4A LTR ERV1 263 664 0 505 270 82 30 chr9 27102597 27102830 -90759797 + L1MEd LINE L1 985 1229 -4890 1488 192 0 55 chr9 27102874 27103182 -90759445 - AluJo SINE Alu -21 291 1 2093 77 7 0 chr9 27103468 27103754 -90758873 - L1PA7 LINE L1 -3 6151 5864 2188 62 3 0 chr9 27103754 27104042 -90758585 + L1P LINE L1 4369 4657 -1489 183 260 0 20 chr9 27105093 27105143 -90757484 + MIR SINE MIR 100 148 -114 289 371 51 69 chr9 27105227 27105620 -90757007 + L2 LINE L2 2809 3194 -78 181 315 174 0 chr9 27106968 27107060 -90755567 + L2 LINE L2 3156 3263 -9 249 250 0 0 chr9 27107171 27107223 -90755404 + MER58A DNA MER1_type 28 79 -28 487 248 9 0 chr9 27107264 27107373 -90755254 + MER58A DNA MER1_type 82 191 -33 403 332 104 5 chr9 27107612 27107805 -90754822 + MIR SINE MIR 48 259 -3 22 0 0 0 chr9 27108000 27108022 -90754605 + AT_rich Low_complexity Low_complexity 1 22 0 1306 227 82 43 chr9 27108656 27109096 -90753531 + MSTB2 LTR MaLR 1 457 0 23 33 0 0 chr9 27109139 27109169 -90753458 + AT_rich Low_complexity Low_complexity 1 30 0 891 240 47 11 chr9 27109355 27109630 -90752997 + HAL1 LINE L1 2036 2320 -187 1557 185 39 13 chr9 27109632 27109940 -90752687 + L1PB4 LINE L1 5841 6156 0 226 152 0 0 chr9 27109948 27109994 -90752633 + HAL1 LINE L1 2306 2351 -156 1339 200 0 8 chr9 27110095 27110340 -90752287 + AluJb SINE Alu 4 246 -66 189 74 0 0 chr9 27110363 27110390 -90752237 + (GAAAA)n Simple_repeat Simple_repeat 3 29 0 22 35 0 0 chr9 27110419 27110448 -90752179 + AT_rich Low_complexity Low_complexity 1 29 0 243 0 0 0 chr9 27111042 27111069 -90751558 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 21 36 0 0 chr9 27111718 27111746 -90750881 + AT_rich Low_complexity Low_complexity 1 28 0 221 339 60 120 chr9 27112706 27113157 -90749470 + L2 LINE L2 2826 3249 -23 580 242 16 0 chr9 27113479 27113603 -90749024 - FLAM_A SINE Alu -6 127 2 2214 104 0 0 chr9 27113609 27113906 -90748721 - AluY SINE Alu -14 297 1 606 239 0 22 chr9 27113927 27114065 -90748562 - FLAM_C SINE Alu -8 135 1 258 331 47 31 chr9 27114208 27114335 -90748292 + L2 LINE L2 3184 3312 -1 1623 93 161 4 chr9 27116091 27116339 -90746288 - AluSg1 SINE Alu -20 289 3 268 204 0 68 chr9 27116845 27116923 -90745704 + T-rich Low_complexity Low_complexity 1 83 -13 3049 169 31 44 chr9 27116923 27117116 -90745511 - L1PB3 LINE L1 -1 6153 5959 1605 171 190 11 chr9 27117116 27117479 -90745148 - MSTA LTR MaLR 0 428 1 8288 162 11 55 chr9 27117479 27119129 -90743498 - MSTA-int LTR MaLR 0 1580 3 1746 171 140 11 chr9 27119131 27119510 -90743117 - MSTA LTR MaLR 0 428 1 3049 169 31 44 chr9 27119510 27119992 -90742635 - L1PB3 LINE L1 -195 5959 5483 268 204 0 68 chr9 27119992 27120016 -90742611 + T-rich Low_complexity Low_complexity 83 96 0 6965 141 22 24 chr9 27120395 27121807 -90740820 - L1MA2 LINE L1 0 6304 4902 2900 115 9 0 chr9 27121807 27122241 -90740386 - L1PB2 LINE L1 -2 6149 5712 6965 141 22 24 chr9 27122241 27123015 -90739612 - L1MA2 LINE L1 -1402 4902 4128 31 26 0 0 chr9 27123404 27123442 -90739185 + AT_rich Low_complexity Low_complexity 1 38 0 216 356 9 17 chr9 27123648 27123763 -90738864 - MIR SINE MIR 0 262 149 278 300 97 3 chr9 27125092 27125231 -90737396 + MIR SINE MIR 6 152 -62 473 264 58 80 chr9 27125427 27125753 -90736874 - HAL1b LINE L1 -814 534 216 560 247 0 92 chr9 27125870 27126097 -90736530 + L1MC4 LINE L1 7816 8021 -21 2114 119 0 13 chr9 27126105 27126417 -90736210 - AluSc SINE Alu -1 308 1 302 341 47 0 chr9 27126518 27126647 -90735980 - MIR3 SINE MIR -14 194 60 580 278 98 0 chr9 27126735 27126908 -90735719 - MER58C DNA MER1_type 0 215 26 3191 222 65 42 chr9 27127123 27127826 -90734801 + L1MDb LINE L1 6 691 -5715 2142 130 16 0 chr9 27127826 27128133 -90734494 + AluSx SINE Alu 1 312 0 3191 222 65 42 chr9 27128133 27128988 -90733639 + L1MDb LINE L1 691 1732 -4674 1563 164 44 11 chr9 27128988 27129284 -90733343 + AluJb SINE Alu 1 305 0 3191 222 65 42 chr9 27129284 27129553 -90733074 + L1MDb LINE L1 1732 1993 -4413 520 258 65 41 chr9 27129561 27129852 -90732775 + L1MDb LINE L1 2071 2368 -4038 230 225 0 0 chr9 27129855 27129895 -90732732 - L1MD2 LINE L1 -297 6062 6023 * 595 236 48 36 chr9 27129894 27130144 -90732483 - L1M4 LINE L1 -1816 4330 4078 333 274 62 18 chr9 27130469 27130582 -90732045 - L2 LINE L2 -7 3306 3189 3589 179 38 95 chr9 27130703 27131772 -90730855 - L1MA9 LINE L1 -33 6279 5272 21 0 0 0 chr9 27132171 27132192 -90730435 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr9 27133082 27133110 -90729517 + AT_rich Low_complexity Low_complexity 1 28 0 204 345 103 9 chr9 27133926 27134042 -90728585 + L2 LINE L2 3187 3313 0 24 0 0 0 chr9 27134580 27134604 -90728023 + AT_rich Low_complexity Low_complexity 1 24 0 180 306 16 0 chr9 27134685 27134747 -90727880 + MIR SINE MIR 92 154 -108 2406 61 0 6 chr9 27134794 27135106 -90727521 + AluY SINE Alu 1 310 -1 1629 208 17 0 chr9 27135285 27135583 -90727044 - AluJb SINE Alu -9 303 1 585 79 83 0 chr9 27135628 27135897 -90726730 + (TA)n Simple_repeat Simple_repeat 1 291 0 338 101 76 8 chr9 27135908 27136027 -90726600 + (TA)n Simple_repeat Simple_repeat 1 127 0 4610 99 5 0 chr9 27136058 27136706 -90725921 + L1PA13 LINE L1 5494 6144 -19 191 267 151 12 chr9 27136745 27136831 -90725796 + MIR SINE MIR 164 261 -1 29 47 0 0 chr9 27137199 27137242 -90725385 + AT_rich Low_complexity Low_complexity 1 43 0 202 189 0 38 chr9 27138123 27138176 -90724451 + A-rich Low_complexity Low_complexity 6 56 0 319 301 26 59 chr9 27138187 27138340 -90724287 - MIR SINE MIR -67 195 48 219 302 135 24 chr9 27138391 27138517 -90724110 - L2 LINE L2 -38 3234 3095 347 363 119 12 chr9 27138731 27138891 -90723736 - MIR SINE MIR -65 197 21 290 276 58 35 chr9 27139411 27139498 -90723129 - L2 LINE L2 -37 3235 3147 408 309 56 8 chr9 27139995 27140121 -90722506 - L2 LINE L2 -12 3260 3129 425 289 0 0 chr9 27140253 27140350 -90722277 - MER5A DNA MER1_type -83 106 10 274 254 70 81 chr9 27140566 27140751 -90721876 - MER5A DNA MER1_type 0 189 7 203 360 122 45 chr9 27140776 27141192 -90721435 - L2 LINE L2 -569 2745 2363 2120 145 14 19 chr9 27141192 27141558 -90721069 - THE1B LTR MaLR 0 364 1 10947 102 28 8 chr9 27141560 27143107 -90719520 - THE1B-int LTR MaLR -2 1578 1 2275 139 8 16 chr9 27143107 27143474 -90719153 - THE1B LTR MaLR 0 364 1 203 360 122 45 chr9 27143474 27143519 -90719108 - L2 LINE L2 -950 2364 2244 2119 105 0 41 chr9 27143764 27144078 -90718549 + AluSq SINE Alu 1 301 -12 464 274 156 14 chr9 27144670 27144958 -90717669 + L1ME4a LINE L1 5746 6074 -47 798 226 54 5 chr9 27145133 27145319 -90717308 - MER72 LTR ERV1 -527 195 1 2602 138 24 0 chr9 27146283 27146697 -90715930 - MSTA LTR MaLR -4 424 1 725 271 10 10 chr9 27147020 27147212 -90715415 - MIR SINE MIR 0 262 71 180 365 81 14 chr9 27147219 27147367 -90715260 - MIR SINE MIR -57 205 48 2353 81 3 0 chr9 27147430 27147728 -90714899 + AluY SINE Alu 1 299 -12 3753 155 58 9 chr9 27147747 27148431 -90714196 - L1PA16 LINE L1 -9 6157 5440 3889 189 52 8 chr9 27148426 27149393 -90713234 + L1P LINE L1 4411 5420 -743 289 364 91 0 chr9 27150357 27150544 -90712083 - MIR SINE MIR 0 262 59 180 295 16 16 chr9 27150714 27150775 -90711852 - MIR SINE MIR -2 260 200 362 306 33 33 chr9 27150959 27151142 -90711485 + MLT1J2 LTR MaLR 266 448 -2 306 311 230 0 chr9 27151142 27151303 -90711324 - MIR SINE MIR -59 203 6 868 255 53 24 chr9 27152151 27152398 -90710229 - MIR SINE MIR -8 254 1 1584 192 15 29 chr9 27152741 27153098 -90709529 - MLT1A2 LTR MaLR 0 467 23 2209 108 3 0 chr9 27153315 27153611 -90709016 + AluSx SINE Alu 1 297 -15 329 317 80 43 chr9 27153711 27153922 -90708705 + MIR SINE MIR 45 262 0 242 240 20 0 chr9 27153957 27154007 -90708620 - L2 LINE L2 -5 3308 3258 789 322 111 23 chr9 27154264 27154662 -90707965 + L2 LINE L2 2266 2698 -616 200 163 23 0 chr9 27154841 27154884 -90707743 + (TA)n Simple_repeat Simple_repeat 1 44 0 549 110 0 0 chr9 27154922 27155004 -90707623 + (GGAA)n Simple_repeat Simple_repeat 4 85 0 410 271 196 0 chr9 27156654 27156787 -90705840 + MIR SINE MIR 103 261 -1 299 317 93 33 chr9 27157593 27157776 -90704851 + L2 LINE L2 2651 2844 -470 302 247 79 0 chr9 27157800 27157889 -90704738 + MIR SINE MIR 166 261 -1 1214 55 0 7 chr9 27158037 27158064 -90704563 + L1P LINE L1 4194 4220 -1926 7336 42 0 7 chr9 27158064 27159709 -90702918 - L1PA5 LINE L1 -1 6153 4515 1214 55 0 7 chr9 27159709 27159856 -90702771 + L1P LINE L1 4220 4361 -1785 290 349 37 0 chr9 27159869 27159978 -90702649 + L2 LINE L2 3191 3303 -10 206 326 0 0 chr9 27160076 27160122 -90702505 - MIR SINE MIR -129 79 34 321 26 0 0 chr9 27160128 27160166 -90702461 + (TTCA)n Simple_repeat Simple_repeat 1 38 0 230 433 39 0 chr9 27160279 27160406 -90702221 - L2 LINE L2 -215 3057 2926 1409 149 98 0 chr9 27162276 27162551 -90700076 + L1MB4 LINE L1 5869 6170 -10 271 336 19 28 chr9 27162754 27162861 -90699766 - L2 LINE L2 -1 3312 3207 180 290 0 32 chr9 27163676 27163738 -90698889 + L3b LINE CR1 1281 1340 -243 27 62 0 0 chr9 27163757 27163805 -90698822 + AT_rich Low_complexity Low_complexity 1 48 0 1526 253 107 36 chr9 27164179 27164769 -90697858 - LTR48B LTR ERV1 -6 638 7 27 49 0 0 chr9 27165027 27165068 -90697559 + AT_rich Low_complexity Low_complexity 1 41 0 297 358 18 17 chr9 27166288 27166440 -90696187 + MER5A DNA MER1_type 20 183 -6 24 53 0 0 chr9 27167245 27167283 -90695344 + AT_rich Low_complexity Low_complexity 1 38 0 605 348 62 51 chr9 27167419 27168315 -90694312 + L1M4 LINE L1 2128 3033 -3113 640 298 59 26 chr9 27168335 27168607 -90694020 + L1MB1 LINE L1 173 453 -5860 10891 230 58 32 chr9 27169070 27170374 -90692253 + L1MB1 LINE L1 801 2069 -4335 2398 63 0 7 chr9 27170374 27170677 -90691950 - AluY SINE Alu -10 301 1 10891 230 58 32 chr9 27170677 27171382 -90691245 + L1MB1 LINE L1 2069 2754 -3650 1178 150 55 9 chr9 27171382 27171602 -90691025 - MER30 DNA MER1_type 0 230 1 10891 230 58 32 chr9 27171602 27174307 -90688320 + L1MB1 LINE L1 2754 5570 -834 2021 161 0 0 chr9 27174307 27174618 -90688009 + AluSx SINE Alu 1 311 -1 10891 230 58 32 chr9 27174618 27175473 -90687154 + L1MB1 LINE L1 5570 6401 -3 336 361 110 5 chr9 27176821 27177040 -90685587 - MIR SINE MIR -2 260 19 23945 42 6 4 chr9 27177359 27181154 -90681473 - L1PA5 LINE L1 -3 6151 2346 234 392 20 0 chr9 27183728 27183830 -90678797 - MIR SINE MIR -112 150 47 481 298 148 30 chr9 27183853 27184799 -90677828 + L1MEc LINE L1 109 1139 -5066 1289 114 0 21 chr9 27184853 27185046 -90677581 + MER1B DNA MER1_type 87 275 -64 1182 293 46 27 chr9 27185069 27185697 -90676930 + L1MEc LINE L1 1214 1853 -4543 240 333 39 16 chr9 27186654 27186783 -90675844 + L1ME2 LINE L1 5574 5705 -2103 381 341 32 0 chr9 27186791 27186917 -90675710 + L3 LINE CR1 1437 1566 -11 202 273 30 0 chr9 27186946 27187012 -90675615 + (CAG)n Simple_repeat Simple_repeat 2 69 0 793 263 93 37 chr9 27187383 27187737 -90674890 - MLT1A2 LTR MaLR 0 374 1 2802 121 17 0 chr9 27187866 27188272 -90674355 + MLT2A2 LTR ERVL 1 413 -40 261 0 0 0 chr9 27188284 27188313 -90674314 + (CA)n Simple_repeat Simple_repeat 2 30 0 489 184 0 20 chr9 27188338 27188485 -90674142 + (TA)n Simple_repeat Simple_repeat 1 144 0 306 275 11 11 chr9 27188487 27188578 -90674049 + L1MC4 LINE L1 6612 6702 -1340 375 71 24 106 chr9 27188581 27188625 -90674002 + MLT2A2 LTR ERVL 376 411 -42 390 55 0 41 chr9 27188625 27188698 -90673929 + (TA)n Simple_repeat Simple_repeat 2 71 0 375 71 24 106 chr9 27188698 27188738 -90673889 + MLT2A2 LTR ERVL 411 453 0 390 294 75 10 chr9 27189624 27189825 -90672802 + L1MC4a LINE L1 5617 5830 -1978 317 297 40 84 chr9 27189874 27190123 -90672504 + L1ME2 LINE L1 5854 6091 -73 426 276 112 0 chr9 27190127 27190243 -90672384 - FLAM_A SINE Alu -3 130 2 236 94 0 0 chr9 27190246 27190278 -90672349 + HsTC2 DNA Tc2 32 63 -1835 393 168 168 0 chr9 27190335 27190442 -90672185 + HsTC2 DNA Tc2 1656 1780 -118 1041 276 74 35 chr9 27190452 27191032 -90671595 + L1MEc LINE L1 1859 2461 -3935 2005 275 98 19 chr9 27191133 27192116 -90670511 + L1MEc LINE L1 3550 4609 -1606 17675 168 24 23 chr9 27192118 27192390 -90670237 - L1MA1 LINE L1 0 7721 7451 1995 75 0 11 chr9 27192390 27192656 -90669971 - AluY SINE Alu 0 311 49 2015 88 0 0 chr9 27192657 27192919 -90669708 - AluY SINE Alu -49 262 1 17675 168 24 23 chr9 27192919 27194289 -90668338 - L1MA1 LINE L1 -270 7451 6084 246 95 0 0 chr9 27194289 27194331 -90668296 + (TTGG)n Simple_repeat Simple_repeat 2 43 0 17675 168 24 23 chr9 27194331 27198617 -90664010 - L1MA1 LINE L1 -1637 6084 1745 207 0 0 0 chr9 27198617 27198640 -90663987 + (TC)n Simple_repeat Simple_repeat 2 24 0 17675 168 24 23 chr9 27198640 27200373 -90662254 - L1MA1 LINE L1 -5976 1745 16 461 330 53 47 chr9 27200429 27200750 -90661877 - L1ME LINE L1 -346 5775 5453 467 246 99 0 chr9 27201552 27201694 -90660933 + MER69A DNA AcHobo 16 171 -6 306 330 28 0 chr9 27201972 27202081 -90660546 - MIR3 SINE MIR -10 198 87 328 313 144 6 chr9 27202755 27202915 -90659712 + MIR SINE MIR 10 191 -71 495 335 69 0 chr9 27203999 27204187 -90658440 + MIR SINE MIR 29 229 -33 6407 194 30 15 chr9 27205423 27205552 -90657075 + L1M2 LINE L1 2512 2638 -4210 1528 153 80 52 chr9 27205552 27205917 -90656710 - THE1C LTR MaLR 0 375 1 6407 194 30 15 chr9 27205917 27207739 -90654888 + L1M2 LINE L1 2638 4494 -2354 3582 152 63 0 chr9 27207739 27208313 -90654314 - LTR9 LTR ERV1 0 612 3 5747 183 58 18 chr9 27208316 27209565 -90653062 - HUERS-P3b LTR ERV1 -7 7411 6112 3672 83 7 11 chr9 27209571 27210110 -90652517 - HUERS-P3b LTR ERV1 -3809 3609 3073 1777 217 76 2 chr9 27210110 27210520 -90652107 + LTR8 LTR ERV1 1 440 -251 13059 167 31 30 chr9 27210522 27211960 -90650667 - HUERS-P3b LTR ERV1 -4777 2641 1197 333 0 0 0 chr9 27211960 27211997 -90650630 + (CA)n Simple_repeat Simple_repeat 1 37 0 13059 167 31 30 chr9 27211997 27213180 -90649447 - HUERS-P3b LTR ERV1 -6221 1197 17 3591 162 46 2 chr9 27213197 27213783 -90648844 - LTR9 LTR ERV1 0 612 1 2746 198 13 5 chr9 27213783 27214416 -90648211 + L1M2 LINE L1 4491 5128 -1720 2387 40 40 17 chr9 27214421 27214719 -90647908 - AluY SINE Alu -6 305 1 348 83 0 0 chr9 27214930 27214978 -90647649 + (TG)n Simple_repeat Simple_repeat 1 48 0 228 336 51 7 chr9 27215405 27215542 -90647085 - MIR SINE MIR 0 262 120 213 354 0 0 chr9 27215810 27215875 -90646752 - MIR SINE MIR -3 259 195 236 217 28 104 chr9 27215882 27215988 -90646639 - MLT1H LTR MaLR 0 549 452 245 320 10 10 chr9 27216121 27216218 -90646409 - MLT1H LTR MaLR -307 242 146 1227 169 165 4 chr9 27216475 27216717 -90645910 - AluJo SINE Alu -15 297 17 23 97 0 0 chr9 27217035 27217107 -90645520 + AT_rich Low_complexity Low_complexity 1 72 0 201 363 0 0 chr9 27218396 27218487 -90644140 + (TA)n Simple_repeat Simple_repeat 2 92 0 1402 179 39 4 chr9 27218487 27218766 -90643861 + MLT1A1 LTR MaLR 77 365 0 21 57 0 0 chr9 27218770 27218805 -90643822 + AT_rich Low_complexity Low_complexity 1 35 0 979 215 92 0 chr9 27219035 27219339 -90643288 - MER33 DNA MER1_type -3 321 1 1658 241 145 73 chr9 27219819 27220768 -90641859 + LTR28 LTR ERV1 3 1020 0 1405 214 0 16 chr9 27220863 27221172 -90641455 - MER67D LTR ERV1 -210 304 1 278 254 218 9 chr9 27221507 27221617 -90641010 + MER5A DNA MER1_type 54 186 -3 2381 204 32 2 chr9 27222602 27223101 -90639526 + MER67D LTR ERV1 1 514 0 483 18 0 0 chr9 27223119 27223175 -90639452 + (TG)n Simple_repeat Simple_repeat 2 57 0 365 259 48 54 chr9 27223918 27224084 -90638543 + MIR SINE MIR 91 255 -7 246 179 0 0 chr9 27224102 27224158 -90638469 + CT-rich Low_complexity Low_complexity 3 58 0 250 250 25 0 chr9 27225012 27225092 -90637535 - MER53 DNA DNA -1 188 107 246 247 26 0 chr9 27225023 27225100 -90637527 + MER53 DNA DNA 23 101 -88 * 2827 13 0 0 chr9 27225797 27226110 -90636517 - AluYb8 SINE Alu -5 313 1 227 285 67 28 chr9 27226366 27226545 -90636082 - L1MEd LINE L1 -4562 1978 1793 812 316 79 68 chr9 27226545 27227383 -90635244 - L1MEd LINE L1 -1011 1890 935 2092 153 0 0 chr9 27227700 27228001 -90634626 - AluSx SINE Alu -9 303 3 2158 130 0 7 chr9 27228903 27229202 -90633425 - AluSc SINE Alu -12 297 1 34501 95 6 16 chr9 27230591 27236795 -90625832 + L1PA6 LINE L1 11 6153 -1 2186 131 73 14 chr9 27237378 27237722 -90624905 - THE1B LTR MaLR 0 364 1 11188 110 10 1 chr9 27237723 27239288 -90623339 - THE1B-int LTR MaLR -1 1579 1 1924 143 88 26 chr9 27239288 27239631 -90622996 - THE1B LTR MaLR 0 364 1 1113 175 0 0 chr9 27240284 27240484 -90622143 + L1PBa LINE L1 3 202 -6661 * 9162 123 60 7 chr9 27240481 27242683 -90619944 + L1PBa LINE L1 639 3129 -3733 559 254 31 16 chr9 27242930 27243123 -90619504 + LTR7 LTR ERV1 238 433 -17 5554 261 27 26 chr9 27243652 27247588 -90615039 + HERVH LTR ERV1 596 7682 -31 429 296 28 28 chr9 27247880 27248093 -90614534 + LTR7 LTR ERV1 238 450 0 4222 165 8 19 chr9 27248112 27249554 -90613073 + L1PB1 LINE L1 4333 5759 -392 198 0 0 0 chr9 27249554 27249576 -90613051 + (TCTA)n Simple_repeat Simple_repeat 1 22 0 4222 165 8 19 chr9 27249576 27249690 -90612937 + L1PB1 LINE L1 5759 5873 -278 2824 91 10 7 chr9 27249695 27250111 -90612516 - L1PA8 LINE L1 -2 6170 5754 1673 91 10 0 chr9 27249897 27250590 -90612037 - L1PA8A LINE L1 -162 5969 5126 1953 87 35 7 chr9 27250590 27250873 -90611754 + L1PB1 LINE L1 5857 6151 0 1291 208 65 6 chr9 27251617 27251939 -90610688 - MER58B DNA MER1_type 0 341 1 2365 120 14 19 chr9 27253210 27253576 -90609051 + THE1B LTR MaLR 1 364 0 21 36 0 0 chr9 27254203 27254231 -90608396 + AT_rich Low_complexity Low_complexity 1 28 0 207 293 71 57 chr9 27255031 27255171 -90607456 + L2 LINE L2 2936 3077 -195 2631 136 44 2 chr9 27255695 27256106 -90606521 + MSTC LTR MaLR 1 428 0 202 280 20 0 chr9 27257005 27257055 -90605572 + L2 LINE L2 3217 3267 -5 28 61 0 0 chr9 27257603 27257652 -90604975 + AT_rich Low_complexity Low_complexity 1 49 0 245 215 15 0 chr9 27257872 27257937 -90604690 + (TA)n Simple_repeat Simple_repeat 2 67 0 243 0 0 0 chr9 27258191 27258218 -90604409 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 235 226 16 16 chr9 27258224 27258286 -90604341 + (TCCA)n Simple_repeat Simple_repeat 4 65 0 23 68 0 0 chr9 27258344 27258388 -90604239 + AT_rich Low_complexity Low_complexity 1 44 0 3841 199 57 13 chr9 27258400 27259416 -90603211 - L1MB5 LINE L1 -9 6165 5103 827 217 17 0 chr9 27259409 27259589 -90603038 - L1MB5 LINE L1 -1543 4603 4421 * 190 367 72 7 chr9 27259984 27260123 -90602504 - L2 LINE L2 -5 3308 3161 679 310 175 14 chr9 27260754 27261324 -90601303 + L2 LINE L2 2641 3313 0 254 269 15 0 chr9 27263086 27263153 -90599474 + MIR3 SINE MIR 97 164 -44 2143 125 76 15 chr9 27264644 27264987 -90597640 - THE1B LTR MaLR 0 364 1 10888 109 19 2 chr9 27264997 27266540 -90596087 - THE1B-int LTR MaLR -11 1569 1 2102 113 69 17 chr9 27266540 27266886 -90595741 - THE1B LTR MaLR 0 364 1 193 356 76 30 chr9 27267591 27267723 -90594904 - MIR SINE MIR -76 186 49 372 94 0 0 chr9 27267975 27268028 -90594599 + (CA)n Simple_repeat Simple_repeat 2 54 0 22 0 0 0 chr9 27269404 27269426 -90593201 + AT_rich Low_complexity Low_complexity 1 22 0 183 326 51 65 chr9 27269794 27269932 -90592695 - MIR SINE MIR -78 184 49 198 333 0 0 chr9 27270094 27270157 -90592470 - L2 LINE L2 -4 3268 3206 266 200 0 0 chr9 27270366 27270416 -90592211 - L1MC4a LINE L1 -6 7802 7753 471 138 23 92 chr9 27270416 27270546 -90592081 + L1MB8 LINE L1 5921 6041 -137 * 6679 61 9 0 chr9 27270535 27271405 -90591222 - L1PA7 LINE L1 0 6154 5277 231 61 0 0 chr9 27271490 27271523 -90591104 + (TG)n Simple_repeat Simple_repeat 1 33 0 21 0 0 0 chr9 27272271 27272292 -90590335 + AT_rich Low_complexity Low_complexity 1 21 0 713 186 0 0 chr9 27272988 27273149 -90589478 + FLAM_C SINE Alu 6 166 0 1509 204 57 56 chr9 27274402 27274921 -90587706 - MER67C LTR ERV1 -5 509 1 333 0 0 0 chr9 27275450 27275487 -90587140 + (TG)n Simple_repeat Simple_repeat 2 38 0 21 95 0 0 chr9 27275714 27275777 -90586850 + AT_rich Low_complexity Low_complexity 1 63 0 23 54 0 0 chr9 27278807 27278844 -90583783 + AT_rich Low_complexity Low_complexity 1 37 0 1626 196 2 86 chr9 27279566 27279767 -90582860 - MLT1A2 LTR MaLR 0 374 158 384 22 0 0 chr9 27279767 27279812 -90582815 + (TG)n Simple_repeat Simple_repeat 1 45 0 2893 159 36 26 chr9 27279819 27280404 -90582223 - LTR49 LTR ERV1 -2 593 3 1626 196 2 86 chr9 27280404 27280602 -90582025 - MLT1A2 LTR MaLR -222 152 1 336 48 0 0 chr9 27283112 27283154 -90579473 + (CA)n Simple_repeat Simple_repeat 1 42 0 229 279 122 0 chr9 27283159 27283301 -90579326 + MIR SINE MIR 94 262 0 1175 176 92 0 chr9 27283698 27283936 -90578691 + L1MB1 LINE L1 5905 6164 -4 2537 174 2 17 chr9 27284246 27284666 -90577961 - MSTC LTR MaLR -12 416 3 305 293 27 34 chr9 27284685 27284832 -90577795 + MLT1J1 LTR MaLR 62 207 -239 24 0 0 0 chr9 27285124 27285148 -90577479 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr9 27285468 27285492 -90577135 + AT_rich Low_complexity Low_complexity 1 24 0 291 28 0 0 chr9 27285699 27285735 -90576892 + (CA)n Simple_repeat Simple_repeat 1 36 0 655 314 63 26 chr9 27285910 27286289 -90576338 + L1ME1 LINE L1 5407 5799 -2009 21 0 0 0 chr9 27286468 27286489 -90576138 + AT_rich Low_complexity Low_complexity 1 21 0 2984 209 37 6 chr9 27286523 27287225 -90575402 + L1MB7 LINE L1 5296 6019 -165 328 272 97 68 chr9 27287489 27287695 -90574932 + L1MC4a LINE L1 6382 6593 -1215 691 306 35 11 chr9 27287755 27288131 -90574496 + L1MEc LINE L1 1419 1803 -4593 342 321 44 15 chr9 27288226 27288363 -90574264 + L1MC5 LINE L1 6647 6787 -1174 2415 254 97 14 chr9 27288416 27289745 -90572882 + L1MEc LINE L1 1838 3239 -2976 483 271 36 14 chr9 27289743 27289969 -90572658 + L1ME1 LINE L1 5943 6184 0 * 456 271 34 38 chr9 27290035 27290271 -90572356 + L1MC5 LINE L1 7679 7913 -48 23 0 0 0 chr9 27290474 27290497 -90572130 + AT_rich Low_complexity Low_complexity 1 23 0 477 333 52 0 chr9 27290544 27290697 -90571930 + MIR SINE MIR 36 196 -66 24 0 0 0 chr9 27290864 27290888 -90571739 + AT_rich Low_complexity Low_complexity 1 24 0 26343 43 2 2 chr9 27292811 27296926 -90565701 + L1PA4 LINE L1 2040 6155 0 1076 219 157 14 chr9 27297063 27297414 -90565213 - LTR37A LTR ERV1 -12 414 14 1588 245 57 18 chr9 27297644 27298085 -90564542 - MLT1C LTR MaLR -4 463 6 542 343 6 0 chr9 27298332 27298498 -90564129 + MIR3 SINE MIR 33 199 -9 325 253 11 33 chr9 27300504 27300595 -90562032 - MIR SINE MIR -15 247 159 294 279 257 0 chr9 27301522 27301662 -90560965 + MIR SINE MIR 23 198 -64 244 248 86 38 chr9 27301714 27301819 -90560808 - MIR SINE MIR -6 256 147 * 264 292 56 11 chr9 27301773 27301862 -90560765 + MIR SINE MIR 156 248 -14 204 40 0 0 chr9 27306456 27306481 -90556146 + (TTTTG)n Simple_repeat Simple_repeat 5 29 0 256 254 60 67 chr9 27307415 27307549 -90555078 - MIR SINE MIR 0 262 130 5595 124 5 28 chr9 27307684 27308577 -90554050 - MER4D LTR ERV1 0 872 1 208 329 35 0 chr9 27310930 27311015 -90551612 - MIR SINE MIR 0 262 175 189 325 48 24 chr9 27311105 27311188 -90551439 - MIR SINE MIR -131 131 47 259 313 154 42 chr9 27312381 27312549 -90550078 + MLT1J LTR MaLR 224 422 -89 2070 230 87 69 chr9 27312549 27313276 -90549351 + LTR68 LTR ERV1 1 740 0 259 313 154 42 chr9 27313276 27313321 -90549306 + MLT1J LTR MaLR 422 461 -50 22 0 0 0 chr9 27313973 27313995 -90548632 + AT_rich Low_complexity Low_complexity 1 22 0 275 383 17 8 chr9 27314876 27314996 -90547631 + MIR3 SINE MIR 88 208 0 247 317 58 50 chr9 27315143 27315263 -90547364 + MIR SINE MIR 71 191 -71 22 80 0 0 chr9 27315349 27315399 -90547228 + AT_rich Low_complexity Low_complexity 1 50 0 219 310 0 62 chr9 27315646 27315759 -90546868 + L2 LINE L2 1583 1688 -1626 276 329 66 48 chr9 27315790 27315957 -90546670 - MLT1K LTR MaLR -290 298 129 603 40 0 0 chr9 27316818 27316892 -90545735 + (TTTTA)n Simple_repeat Simple_repeat 2 75 0 217 331 141 21 chr9 27316949 27317091 -90545536 + MIR SINE MIR 34 192 -70 225 328 90 49 chr9 27317392 27317514 -90545113 - MIR SINE MIR -58 150 24 2076 196 34 12 chr9 27317573 27317986 -90544641 - MSTB LTR MaLR -4 422 1 1420 253 50 23 chr9 27319338 27319781 -90542846 - MLT1C LTR MaLR 0 467 13 24349 149 16 21 chr9 27320207 27323080 -90539547 - L1PA8A LINE L1 0 6446 3560 363 23 0 0 chr9 27323080 27323124 -90539503 + (TCTA)n Simple_repeat Simple_repeat 4 47 0 24349 149 16 21 chr9 27323124 27326666 -90535961 - L1PA8A LINE L1 -2886 3560 3 685 286 15 10 chr9 27327308 27327511 -90535116 + MIR SINE MIR 59 262 0 234 218 0 36 chr9 27327679 27327734 -90534893 + L3b LINE CR1 1527 1579 -4 197 376 83 32 chr9 27328127 27328284 -90534343 + L2 LINE L2 3108 3272 0 22 35 0 0 chr9 27328423 27328452 -90534175 + AT_rich Low_complexity Low_complexity 1 29 0 371 333 61 20 chr9 27328643 27328790 -90533837 - L2 LINE L2 -3 3269 3117 1365 196 0 0 chr9 27328863 27329087 -90533540 + AluJb SINE Alu 16 239 -73 274 300 244 17 chr9 27329497 27329857 -90532770 - L2 LINE L2 -619 2695 2254 243 0 0 0 chr9 27329873 27329900 -90532727 + (CA)n Simple_repeat Simple_repeat 2 28 0 254 155 0 56 chr9 27329971 27330042 -90532585 + (TG)n Simple_repeat Simple_repeat 2 68 0 245 218 26 39 chr9 27330072 27330150 -90532477 + L1MCa LINE L1 1992 2068 -4358 236 216 0 72 chr9 27330137 27330234 -90532393 - L1MC4 LINE L1 -1339 6703 6614 * 254 206 16 0 chr9 27330234 27330297 -90532330 + (CATATA)n Simple_repeat Simple_repeat 2 65 0 270 281 11 0 chr9 27330301 27330390 -90532237 + L1MC4 LINE L1 6614 6703 -1339 229 322 26 53 chr9 27330528 27330646 -90531981 - L2 LINE L2 -1230 2084 1969 2158 118 0 0 chr9 27330646 27330943 -90531684 - AluSc SINE Alu -12 297 1 229 322 26 53 chr9 27330943 27330976 -90531651 - L2 LINE L2 -1345 1969 1937 2903 173 93 2 chr9 27330976 27331515 -90531112 - LTR69 LTR ERVL 0 588 1 206 280 0 0 chr9 27332015 27332065 -90530562 - MIR SINE MIR -15 247 198 509 342 21 60 chr9 27332070 27332403 -90530224 - L2 LINE L2 -1837 1477 1158 400 360 37 37 chr9 27332571 27332999 -90529628 + L1ME LINE L1 166 593 -5612 724 322 59 13 chr9 27333185 27333781 -90528846 + L1ME LINE L1 1007 1629 -4767 23 54 0 0 chr9 27333845 27333882 -90528745 + AT_rich Low_complexity Low_complexity 1 37 0 985 236 50 8 chr9 27333882 27334140 -90528487 + L1ME3 LINE L1 5890 6158 -4 273 302 89 68 chr9 27334262 27334497 -90528130 + L3 LINE CR1 1085 1324 -253 264 275 43 0 chr9 27334533 27334602 -90528025 + L3 LINE CR1 1430 1501 -76 1472 176 60 33 chr9 27334659 27334961 -90527666 + AluJb SINE Alu 1 310 -2 306 312 0 0 chr9 27337750 27337827 -90524800 + L2 LINE L2 2943 3019 -253 375 299 54 12 chr9 27337961 27338128 -90524499 + MIR SINE MIR 84 257 -5 21 71 0 0 chr9 27338140 27338182 -90524445 + AT_rich Low_complexity Low_complexity 1 42 0 1906 180 83 11 chr9 27339499 27339933 -90522694 + MLT1C LTR MaLR 3 467 0 439 310 65 27 chr9 27340192 27340560 -90522067 - HAL1b LINE L1 -708 640 259 206 241 0 19 chr9 27340565 27340619 -90522008 + (TATATG)n Simple_repeat Simple_repeat 6 58 0 398 282 6 31 chr9 27340833 27340996 -90521631 - L1M4 LINE L1 -1421 4725 4567 1375 143 41 121 chr9 27341002 27341365 -90521262 + THE1C LTR MaLR 1 334 -41 2292 264 62 18 chr9 27341369 27342308 -90520319 - L1M4 LINE L1 -1622 4524 3545 399 288 74 18 chr9 27342332 27342669 -90519958 - L1MEc LINE L1 -5126 1270 915 1427 199 31 3 chr9 27342670 27342956 -90519671 + AluJb SINE Alu 1 294 -18 28 0 0 0 chr9 27342956 27342984 -90519643 + AT_rich Low_complexity Low_complexity 1 28 0 308 358 20 60 chr9 27343100 27343500 -90519127 - L1MEc LINE L1 -5572 824 441 568 345 26 40 chr9 27343574 27343925 -90518702 - L1MEc LINE L1 -6021 375 30 221 341 11 0 chr9 27345147 27345235 -90517392 + L2 LINE L2 2763 2851 -463 284 326 61 10 chr9 27346527 27346625 -90516002 + L2 LINE L2 3170 3272 0 208 375 11 0 chr9 27346694 27346782 -90515845 - MIR SINE MIR -82 180 92 693 291 88 30 chr9 27346913 27347424 -90515203 - LTR50 LTR ERVL 0 795 34 306 312 0 0 chr9 27348157 27348234 -90514393 + L2 LINE L2 2943 3019 -253 368 299 54 12 chr9 27348368 27348535 -90514092 + MIR SINE MIR 84 257 -5 21 71 0 0 chr9 27348547 27348589 -90514038 + AT_rich Low_complexity Low_complexity 1 42 0 1514 203 87 19 chr9 27349903 27350327 -90512300 + MLT1C LTR MaLR 3 455 -12 5193 79 39 0 chr9 27350678 27351390 -90511237 + HERVL-A2 LTR ERVL 4915 5654 0 2148 118 23 0 chr9 27351390 27351696 -90510931 + MLT2A2 LTR ERVL 1 313 -140 315 53 0 0 chr9 27351712 27351750 -90510877 - MLT2A2 LTR ERVL 0 453 416 245 167 0 56 chr9 27351791 27351845 -90510782 + MLT1F LTR MaLR 77 127 -415 226 304 0 0 chr9 27352060 27352116 -90510511 + L2 LINE L2 3212 3267 -5 220 146 24 0 chr9 27352765 27352806 -90509821 + (TA)n Simple_repeat Simple_repeat 2 43 0 28 0 0 0 chr9 27353244 27353272 -90509355 + AT_rich Low_complexity Low_complexity 1 28 0 189 0 0 0 chr9 27354791 27354812 -90507815 + (A)n Simple_repeat Simple_repeat 1 21 0 565 184 16 0 chr9 27355525 27355650 -90506977 + L1MA7 LINE L1 6165 6291 0 518 336 137 24 chr9 27355718 27356398 -90506229 - L2 LINE L2 -1 3312 2542 2841 103 16 0 chr9 27356986 27357366 -90505261 + MLT2A2 LTR ERVL 8 393 -60 288 0 0 0 chr9 27357366 27357398 -90505229 + (TC)n Simple_repeat Simple_repeat 2 33 0 709 74 11 0 chr9 27357400 27357495 -90505132 - HERVL LTR ERVL -5416 238 143 659 311 104 17 chr9 27357787 27358086 -90504541 - LTR50 LTR ERVL 0 795 471 445 235 62 49 chr9 27358159 27358321 -90504306 - LTR50 LTR ERVL -629 166 3 266 348 51 0 chr9 27358453 27358591 -90504036 - L2 LINE L2 -4 3309 3165 222 215 91 29 chr9 27359292 27359375 -90503252 - MIR SINE MIR -15 193 97 280 293 35 100 chr9 27360898 27360924 -90501703 + L2 LINE L2 3023 3049 -264 2458 57 3 0 chr9 27360924 27361225 -90501402 + AluY SINE Alu 1 302 -9 280 293 35 100 chr9 27361225 27361427 -90501200 + L2 LINE L2 3049 3236 -77 1862 298 151 26 chr9 27361429 27362413 -90500214 - L2 LINE L2 -7 3306 2200 699 262 18 29 chr9 27362748 27363023 -90499604 + AluSc SINE Alu 6 277 -32 416 363 6 18 chr9 27363110 27363278 -90499349 - MLT1H1 LTR MaLR -357 198 33 240 170 0 0 chr9 27363535 27363588 -90499039 + GA-rich Low_complexity Low_complexity 1 53 0 647 305 120 7 chr9 27364204 27364496 -90498131 + MLT1I LTR MaLR 63 387 -22 343 253 32 97 chr9 27364708 27364842 -90497785 + MIR SINE MIR 70 194 -68 800 222 37 23 chr9 27364842 27365058 -90497569 + MER20 DNA MER1_type 1 219 0 343 253 32 97 chr9 27365058 27365077 -90497550 + MIR SINE MIR 194 213 -49 22 0 0 0 chr9 27365444 27365466 -90497161 + AT_rich Low_complexity Low_complexity 1 22 0 2023 146 0 13 chr9 27365904 27366220 -90496407 + AluSx SINE Alu 1 312 0 259 301 80 32 chr9 27367961 27368243 -90494384 + L1ME LINE L1 5509 5818 -303 270 256 11 111 chr9 27368639 27368729 -90493898 + L2 LINE L2 3136 3216 -56 219 281 115 10 chr9 27369294 27369390 -90493237 - MIR3 SINE MIR -1 207 102 2009 66 0 4 chr9 27369740 27369996 -90492631 + AluY SINE Alu 4 258 -53 207 0 0 0 chr9 27369997 27370020 -90492607 + (A)n Simple_repeat Simple_repeat 1 23 0 25444 90 10 6 chr9 27370492 27373920 -90488707 - HERVL LTR ERVL -2034 3620 181 2438 81 0 3 chr9 27374699 27375006 -90487621 + AluY SINE Alu 2 307 -4 280 274 0 24 chr9 27375370 27375454 -90487173 - MIR3 SINE MIR -42 166 85 1965 184 124 50 chr9 27375768 27376403 -90486224 + LTR1B LTR ERV1 1 720 -106 247 307 42 60 chr9 27376576 27376742 -90485885 + L2 LINE L2 2892 3054 -259 1016 202 23 18 chr9 27376829 27377047 -90485580 + MER20 DNA MER1_type 1 219 0 318 337 92 18 chr9 27377571 27377734 -90484893 - MIR3 SINE MIR 0 208 34 284 275 113 0 chr9 27378355 27378435 -90484192 + L2 LINE L2 3207 3295 -18 2014 118 3 7 chr9 27378451 27378772 -90483855 - AluSq SINE Alu 0 320 1 2080 157 18 0 chr9 27380044 27380381 -90482246 - MER61A LTR ERV1 0 343 1 1876 171 3 3 chr9 27381728 27382037 -90480590 + AluJo SINE Alu 2 310 -2 26 50 0 0 chr9 27382044 27382084 -90480543 + AT_rich Low_complexity Low_complexity 1 40 0 641 228 21 7 chr9 27384684 27384829 -90477798 + MER117 DNA MER1_type 4 150 -47 261 200 40 27 chr9 27384853 27384928 -90477699 + L2 LINE L2 2685 2760 -554 185 356 26 43 chr9 27385109 27385224 -90477403 + L2 LINE L2 2987 3099 -173 318 171 14 57 chr9 27385903 27385973 -90476654 + MER5A DNA MER1_type 10 76 -113 570 101 0 13 chr9 27385973 27386052 -90476575 + MER4E LTR ERV1 652 729 -37 187 274 236 19 chr9 27386088 27386194 -90476433 + MER5A DNA MER1_type 61 189 0 622 217 22 7 chr9 27386207 27386345 -90476282 - MER5B DNA MER1_type -30 148 9 219 285 223 31 chr9 27386358 27386488 -90476139 + MER5A DNA MER1_type 35 189 0 385 242 68 38 chr9 27386612 27386744 -90475883 + MLT1E3 LTR MaLR 69 204 -420 907 300 134 20 chr9 27386747 27387440 -90475187 + HAL1 LINE L1 1141 1912 -595 727 157 11 22 chr9 27387484 27387662 -90474965 + GA-rich Low_complexity Low_complexity 2 177 0 207 281 101 34 chr9 27388874 27388963 -90473664 - MIR3 SINE MIR -16 192 98 273 404 43 7 chr9 27390579 27390720 -90471907 + L2 LINE L2 3127 3272 0 2453 131 17 0 chr9 27391481 27391839 -90470788 + THE1B LTR MaLR 1 364 0 2452 167 24 5 chr9 27392000 27392420 -90470207 + MSTA LTR MaLR 1 428 0 275 355 43 16 chr9 27392596 27392782 -90469845 - MIR SINE MIR -52 210 20 26 30 0 0 chr9 27393227 27393260 -90469367 + AT_rich Low_complexity Low_complexity 1 33 0 182 208 83 21 chr9 27394336 27394384 -90468243 - L2 LINE L2 0 3272 3222 184 250 62 62 chr9 27394776 27394840 -90467787 + L3 LINE CR1 345 408 -1169 343 316 35 46 chr9 27395156 27395330 -90467297 - L2 LINE L2 -435 2879 2708 1256 129 0 0 chr9 27395331 27395501 -90467126 - AluSg/x SINE Alu -12 300 131 276 270 93 110 chr9 27395507 27395744 -90466883 - L2 LINE L2 -602 2712 2480 1563 203 7 7 chr9 27395918 27396204 -90466423 - AluJo SINE Alu -21 291 6 194 316 18 0 chr9 27396409 27396466 -90466161 - L2 LINE L2 -3 3269 3212 385 290 62 7 chr9 27397002 27397147 -90465480 - MIR SINE MIR -51 211 59 2467 75 0 3 chr9 27397462 27397770 -90464857 + AluY SINE Alu 1 307 -4 285 319 46 10 chr9 27398133 27398264 -90464363 - MIR3 SINE MIR -42 166 32 2374 179 176 45 chr9 27398531 27399195 -90463432 + LTR1B LTR ERV1 1 751 -75 217 283 17 0 chr9 27400452 27400512 -90462115 + MIR3 SINE MIR 125 185 -23 2293 98 7 0 chr9 27401521 27401827 -90460800 - AluY SINE Alu -3 308 1 1570 255 41 19 chr9 27401854 27402391 -90460236 - L1M4 LINE L1 -2154 3992 3444 375 344 49 101 chr9 27402642 27403070 -90459557 + L2 LINE L2 2866 3271 -1 366 114 0 0 chr9 27405251 27405321 -90457306 + (TA)n Simple_repeat Simple_repeat 1 70 0 441 103 0 0 chr9 27405422 27405490 -90457137 + (TAGA)n Simple_repeat Simple_repeat 3 70 0 444 295 67 52 chr9 27407069 27407262 -90455365 + MIR SINE MIR 11 206 -56 1892 153 7 13 chr9 27407336 27407643 -90454984 - AluJo SINE Alu -5 307 3 417 282 164 9 chr9 27408349 27408569 -90454058 + MIR SINE MIR 9 262 0 180 0 0 0 chr9 27408671 27408691 -90453936 + (CAAAAA)n Simple_repeat Simple_repeat 3 22 0 239 308 33 0 chr9 27408852 27408943 -90453684 - MIR3 SINE MIR -4 204 111 1185 87 0 0 chr9 27408960 27409110 -90453517 - AluSc SINE Alu -159 150 1 1966 138 0 3 chr9 27409113 27409436 -90453191 - AluSx SINE Alu 0 322 1 22 0 0 0 chr9 27409874 27409896 -90452731 + AT_rich Low_complexity Low_complexity 1 22 0 343 253 32 97 chr9 27410263 27410282 -90452345 - MIR SINE MIR -49 213 194 857 241 19 5 chr9 27410282 27410498 -90452129 - MER20 DNA MER1_type 0 219 1 343 253 32 97 chr9 27410498 27410632 -90451995 - MIR SINE MIR -68 194 70 652 312 129 6 chr9 27410844 27411161 -90451466 - MLT1I LTR MaLR -22 387 32 240 170 0 0 chr9 27411752 27411805 -90450822 + CT-rich Low_complexity Low_complexity 1 53 0 420 364 6 17 chr9 27412053 27412229 -90450398 + MLT1G3 LTR MaLR 25 198 -357 2297 92 7 3 chr9 27412288 27412592 -90450035 - AluSc SINE Alu -4 305 1 1433 255 14 31 chr9 27412593 27413009 -90449618 + MLT1C LTR MaLR 34 442 -25 539 289 108 16 chr9 27413067 27413390 -90449237 + MLT1G3 LTR MaLR 156 595 0 298 287 8 33 chr9 27413482 27413604 -90449023 + MLT1G3-int LTR MaLR 258 376 -995 231 243 81 0 chr9 27413696 27413770 -90448857 + MLT1C LTR MaLR 437 516 -39 313 307 11 0 chr9 27413819 27413907 -90448720 + MLT1H1 LTR MaLR 1 89 -466 213 65 0 0 chr9 27414931 27414962 -90447665 + (A)n Simple_repeat Simple_repeat 1 31 0 293 145 16 0 chr9 27415742 27415804 -90446823 + (CA)n Simple_repeat Simple_repeat 2 64 0 2096 136 0 16 chr9 27416390 27416707 -90445920 + AluJb SINE Alu 1 312 0 487 347 86 36 chr9 27416738 27417075 -90445552 + MLT1K LTR MaLR 3 356 -232 295 57 0 0 chr9 27417140 27417175 -90445452 + U2 snRNA snRNA 1 35 -153 295 351 76 0 chr9 27417937 27418068 -90444559 + MIR3 SINE MIR 65 205 -3 23 33 0 0 chr9 27418689 27418719 -90443908 + AT_rich Low_complexity Low_complexity 1 30 0 337 182 80 23 chr9 27419001 27419089 -90443538 - MIR SINE MIR -16 246 154 652 58 0 0 chr9 27419559 27419645 -90442982 - L1PA5 LINE L1 -1 6153 6068 2044 130 7 0 chr9 27420497 27420798 -90441829 + AluY SINE Alu 3 305 -6 457 238 57 33 chr9 27420978 27421100 -90441527 - MLT1I LTR MaLR -5 404 280 260 257 14 14 chr9 27421234 27421308 -90441319 - L2 LINE L2 -1 3312 3239 910 229 132 61 chr9 27421328 27421791 -90440836 - MER67C LTR ERV1 0 514 69 284 180 0 0 chr9 27421856 27421906 -90440721 - MER67D LTR ERV1 -453 61 12 298 178 41 0 chr9 27421925 27421998 -90440629 + L1MA9 LINE L1 6075 6150 -162 7100 238 112 17 chr9 27422012 27424287 -90438340 + L1M3e LINE L1 2 2509 -4528 2637 230 79 54 chr9 27424479 27425688 -90436939 + L1M1 LINE L1 2291 3597 -3968 342 93 19 0 chr9 27425688 27425742 -90436885 - MADE1 DNA Mariner -1 79 25 2637 230 79 54 chr9 27425742 27426133 -90436494 + L1M1 LINE L1 3597 3977 -3588 553 167 10 0 chr9 27426134 27426236 -90436391 + L1M1 LINE L1 4138 4240 -3325 1320 200 12 16 chr9 27426244 27426499 -90436128 - MLT1A1 LTR MaLR -111 254 1 1869 201 11 6 chr9 27426518 27426881 -90435746 + MLT1A1 LTR MaLR 1 365 0 571 276 65 14 chr9 27426906 27427120 -90435507 - L2 LINE L2 -1095 2219 1995 209 204 82 0 chr9 27427137 27427186 -90435441 - L2 LINE L2 -1890 1424 1372 2402 153 3 3 chr9 27427197 27427577 -90435050 + MLT1B LTR MaLR 1 380 -10 924 314 101 36 chr9 27427582 27428105 -90434522 - L2 LINE L2 -1959 1355 799 407 281 31 69 chr9 27428107 27428267 -90434360 - MER5A DNA MER1_type -5 184 31 320 317 175 6 chr9 27428309 27428492 -90434135 - L2 LINE L2 -2504 810 597 34 24 0 0 chr9 27428569 27428610 -90434017 + AT_rich Low_complexity Low_complexity 1 41 0 904 219 33 37 chr9 27428634 27428879 -90433748 + MLT1A1 LTR MaLR 1 271 -119 2015 125 6 56 chr9 27428882 27429219 -90433408 + MER1B DNA MER1_type 20 339 0 192 97 0 0 chr9 27429305 27429336 -90433291 + (CA)n Simple_repeat Simple_repeat 1 31 0 186 339 0 32 chr9 27429336 27429398 -90433229 - L3 LINE CR1 0 1577 1518 2013 165 55 80 chr9 27429422 27429936 -90432691 - L1MC1 LINE L1 -18 6315 5815 478 340 105 0 chr9 27430117 27430308 -90432319 - L3 LINE CR1 -65 1512 1302 311 335 20 66 chr9 27430584 27430781 -90431846 + L3b LINE CR1 1323 1510 -73 356 275 44 12 chr9 27430908 27431068 -90431559 + L1ME LINE L1 5630 5794 -327 33 56 0 0 chr9 27431282 27431336 -90431291 + AT_rich Low_complexity Low_complexity 1 54 0 504 304 119 28 chr9 27431864 27432252 -90430375 + L1ME2 LINE L1 676 1098 -5021 4361 195 31 12 chr9 27432253 27433359 -90429268 + L1MB3 LINE L1 4682 5824 -359 243 0 0 0 chr9 27433359 27433386 -90429241 + (CA)n Simple_repeat Simple_repeat 2 28 0 4361 195 31 12 chr9 27433386 27433753 -90428874 + L1MB3 LINE L1 5824 6183 0 481 284 54 50 chr9 27434808 27435125 -90427502 + L1ME2 LINE L1 2613 2930 -3199 301 316 53 35 chr9 27435190 27435361 -90427266 + L1ME2 LINE L1 4878 5051 -1078 263 288 70 35 chr9 27435565 27435822 -90426805 + L1ME2 LINE L1 5298 5563 -2228 342 270 87 24 chr9 27435855 27436098 -90426529 + L1ME2 LINE L1 5668 5929 -216 29 0 0 0 chr9 27436360 27436389 -90426238 + AT_rich Low_complexity Low_complexity 1 29 0 27 49 0 0 chr9 27436508 27436549 -90426078 + AT_rich Low_complexity Low_complexity 1 41 0 205 333 17 0 chr9 27438637 27438697 -90423930 + L2 LINE L2 3244 3304 -9 322 347 28 21 chr9 27438934 27439078 -90423549 - MER5A DNA MER1_type -44 145 1 2946 69 0 0 chr9 27440503 27440878 -90421749 - L1PA7 LINE L1 -2 6152 5778 1864 169 27 11 chr9 27441236 27441846 -90420781 - MER67C LTR ERV1 0 710 1 419 291 126 13 chr9 27442508 27442659 -90419968 - MIR SINE MIR -74 188 21 208 200 31 0 chr9 27443626 27443691 -90418936 + (TA)n Simple_repeat Simple_repeat 1 67 0 229 356 53 0 chr9 27444527 27444659 -90417968 - MIR SINE MIR -13 249 111 342 219 0 24 chr9 27444864 27444946 -90417681 - LTR67 LTR ERVL -21 536 457 2170 126 0 0 chr9 27446843 27447145 -90415482 - AluSq SINE Alu -11 302 1 1512 146 8 8 chr9 27447975 27448215 -90414412 + AluSg SINE Alu 1 240 -70 180 0 0 0 chr9 27449108 27449128 -90413499 + (T)n Simple_repeat Simple_repeat 1 20 0 24 0 0 0 chr9 27449229 27449253 -90413374 + AT_rich Low_complexity Low_complexity 1 24 0 308 263 0 26 chr9 27449333 27449409 -90413218 - MER5A DNA MER1_type -3 186 113 274 288 0 30 chr9 27449361 27449427 -90413200 + MER5A DNA MER1_type 43 106 -83 * 393 289 82 31 chr9 27449781 27449994 -90412633 - MIR SINE MIR -32 230 3 200 360 101 0 chr9 27450420 27450509 -90412118 + MIR SINE MIR 8 105 -157 2240 90 0 35 chr9 27450536 27450846 -90411781 - AluY SINE Alu -10 301 3 191 146 24 0 chr9 27451518 27451559 -90411068 + CT-rich Low_complexity Low_complexity 1 42 0 680 214 26 7 chr9 27452700 27452854 -90409773 + FRAM SINE Alu 1 157 -19 225 0 0 0 chr9 27453624 27453649 -90408978 + (A)n Simple_repeat Simple_repeat 1 25 0 263 265 48 36 chr9 27453735 27453818 -90408809 + MIR SINE MIR 28 111 -151 222 37 0 0 chr9 27454088 27454115 -90408512 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 2226 115 0 0 chr9 27454162 27454458 -90408169 + AluSx SINE Alu 1 296 -16 691 276 21 16 chr9 27454744 27454936 -90407691 + MLT1I LTR MaLR 210 402 -7 26 0 0 0 chr9 27455820 27455846 -90406781 + AT_rich Low_complexity Low_complexity 1 26 0 185 154 26 0 chr9 27457858 27457897 -90404730 + (TA)n Simple_repeat Simple_repeat 1 40 0 569 301 74 6 chr9 27458262 27458425 -90404202 + MER5B DNA MER1_type 1 174 -4 761 195 0 0 chr9 27458606 27458734 -90403893 + MER7A DNA MER2_type 1 126 -220 853 203 46 13 chr9 27458745 27458982 -90403645 + MER33 DNA MER1_type 52 296 -28 327 320 98 34 chr9 27459344 27459578 -90403049 + MIR SINE MIR 2 250 -12 314 313 118 28 chr9 27459712 27459856 -90402771 + L2 LINE L2 3116 3272 0 342 266 13 0 chr9 27461092 27461171 -90401456 + Tigger3(Golem) DNA MER2_type 1 80 -2949 338 209 15 0 chr9 27461271 27461338 -90401289 + Tigger3(Golem) DNA MER2_type 2961 3028 -1 267 234 16 0 chr9 27461810 27461874 -90400753 + MIR SINE MIR 133 197 -65 550 296 59 0 chr9 27462063 27462232 -90400395 + MIR SINE MIR 37 215 -47 296 297 136 22 chr9 27462876 27463149 -90399478 + L1ME LINE L1 5536 5839 -282 270 256 11 111 chr9 27463523 27463613 -90399014 + L2 LINE L2 3136 3216 -56 2141 63 56 7 chr9 27464394 27464679 -90397948 + AluY SINE Alu 1 299 -12 29 28 0 0 chr9 27465567 27465603 -90397024 + AT_rich Low_complexity Low_complexity 1 36 0 25 65 0 0 chr9 27465694 27465740 -90396887 + AT_rich Low_complexity Low_complexity 1 46 0 368 246 92 8 chr9 27465829 27465959 -90396668 + MER103 DNA DNA 2 142 -24 373 263 42 34 chr9 27466169 27466287 -90396340 + MLT1J LTR MaLR 1 119 -392 286 298 67 0 chr9 27466755 27466859 -90395768 + LTR67 LTR ERVL 433 543 -14 1821 211 103 29 chr9 27466932 27467416 -90395211 + MLT2B1 LTR ERVL 1 520 0 223 314 100 14 chr9 27468629 27468769 -90393858 + MIR SINE MIR 98 249 -13 482 353 120 15 chr9 27469582 27469990 -90392637 + L2 LINE L2 2426 2876 -438 2148 123 0 7 chr9 27470249 27470557 -90392070 + AluSg SINE Alu 1 306 -4 1241 138 0 0 chr9 27470898 27471087 -90391540 + AluSg/x SINE Alu 124 312 0 8203 50 8 227 chr9 27471680 27473453 -90389174 - SVA Other Other -2 1384 1 718 171 85 8 chr9 27473566 27473695 -90388932 - FRAM SINE Alu -22 154 16 925 190 65 0 chr9 27475223 27475407 -90387220 + MER3 DNA MER1_type 10 205 -4 1040 305 96 47 chr9 27475469 27476270 -90386357 - HAL1 LINE L1 -1496 1011 172 246 179 0 0 chr9 27476470 27476526 -90386101 + (TGGA)n Simple_repeat Simple_repeat 1 56 0 2545 57 0 0 chr9 27476544 27476842 -90385785 - AluY SINE Alu -13 298 1 600 252 69 13 chr9 27477536 27477695 -90384932 - MIR3 SINE MIR -7 201 34 710 281 13 45 chr9 27477886 27478110 -90384517 + MIR SINE MIR 20 236 -26 332 312 89 13 chr9 27478901 27479058 -90383569 - MIR3 SINE MIR -10 198 30 389 318 218 0 chr9 27479114 27479284 -90383343 - L2 LINE L2 -2531 783 577 220 387 0 0 chr9 27481897 27481972 -90380655 - L2 LINE L2 -2 3270 3196 475 311 42 37 chr9 27482031 27482221 -90380406 + MIR3 SINE MIR 9 199 -9 350 332 80 25 chr9 27482511 27482710 -90379917 - MIR SINE MIR -49 213 4 24 32 0 0 chr9 27483922 27483953 -90378674 + AT_rich Low_complexity Low_complexity 1 31 0 215 306 32 0 chr9 27484522 27484584 -90378043 + L2 LINE L2 3209 3272 0 358 331 22 39 chr9 27485478 27485593 -90377034 + MIR SINE MIR 42 154 -108 919 275 60 68 chr9 27485593 27486047 -90376580 + MLT1J2 LTR MaLR 1 450 0 358 331 22 39 chr9 27486047 27486112 -90376515 + MIR SINE MIR 154 219 -43 2000 109 14 3 chr9 27486115 27486398 -90376229 + AluSp SINE Alu 5 290 -23 2164 114 0 7 chr9 27486410 27486709 -90375918 + AluSc SINE Alu 1 297 -12 324 342 45 19 chr9 27487610 27487765 -90374862 - MIR SINE MIR -11 251 93 227 167 48 24 chr9 27488416 27488500 -90374127 + (CACAC)n Simple_repeat Simple_repeat 1 86 0 618 233 62 28 chr9 27488638 27488814 -90373813 + LTR53 LTR ERVL 338 519 0 545 250 17 0 chr9 27490471 27490587 -90372040 + FLAM_A SINE Alu 1 118 -15 813 276 74 87 chr9 27490602 27490712 -90371915 - MLT1G LTR MaLR -52 538 428 726 238 119 10 chr9 27490712 27490905 -90371722 - MER58C DNA MER1_type -1 214 1 813 276 74 87 chr9 27490905 27491311 -90371316 - MLT1G LTR MaLR -162 428 1 21 0 0 0 chr9 27492090 27492111 -90370516 + AT_rich Low_complexity Low_complexity 1 21 0 274 260 13 39 chr9 27492564 27492641 -90369986 + MIR3 SINE MIR 125 199 -9 21 0 0 0 chr9 27493297 27493318 -90369309 + AT_rich Low_complexity Low_complexity 1 21 0 1901 152 33 0 chr9 27494409 27494711 -90367916 + AluSx SINE Alu 1 312 0 216 138 52 69 chr9 27495294 27495352 -90367275 + L2 LINE L2 3257 3313 0 597 308 68 13 chr9 27495556 27495790 -90366837 + MIR SINE MIR 3 249 -13 21 0 0 0 chr9 27495854 27495875 -90366752 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr9 27495950 27495982 -90366645 + AT_rich Low_complexity Low_complexity 1 32 0 231 114 0 0 chr9 27496552 27496596 -90366031 + (T)n Simple_repeat Simple_repeat 1 44 0 21 57 0 0 chr9 27497565 27497600 -90365027 + AT_rich Low_complexity Low_complexity 1 35 0 21 71 0 0 chr9 27498987 27499029 -90363598 + AT_rich Low_complexity Low_complexity 1 42 0 211 306 97 0 chr9 27499988 27500112 -90362515 - MIR SINE MIR -58 204 69 2487 84 0 0 chr9 27501072 27501383 -90361244 - AluY SINE Alu 0 311 1 300 342 173 27 chr9 27502191 27502486 -90360141 - L2 LINE L2 0 3272 2935 30587 34 14 1 chr9 27503272 27509297 -90353330 + L1PA3 LINE L1 1 6154 -1 22 0 0 0 chr9 27510100 27510122 -90352505 + AT_rich Low_complexity Low_complexity 1 22 0 448 311 34 28 chr9 27511312 27511530 -90351097 - MIR SINE MIR -34 228 9 1807 169 0 10 chr9 27512069 27512365 -90350262 - AluJo SINE Alu -13 299 7 22 0 0 0 chr9 27512472 27512494 -90350133 + AT_rich Low_complexity Low_complexity 1 22 0 2045 133 3 0 chr9 27512626 27512928 -90349699 - AluY SINE Alu -8 303 1 22 35 0 0 chr9 27513301 27513330 -90349297 + AT_rich Low_complexity Low_complexity 1 29 0 328 361 9 69 chr9 27513847 27514063 -90348564 + MIR SINE MIR 47 249 -13 3398 137 33 50 chr9 27514747 27514871 -90347756 - LTR26 LTR ERV1 0 603 478 3467 109 58 0 chr9 27514871 27515419 -90347208 - LTR19B LTR ERV1 0 580 1 3398 137 33 50 chr9 27515419 27515908 -90346719 - LTR26 LTR ERV1 -125 478 1 393 221 0 0 chr9 27516714 27516800 -90345827 - L1P LINE L1 -3420 2726 2641 384 283 6 17 chr9 27516807 27516980 -90345647 + L1P LINE L1 2747 2917 -3229 * 5217 132 23 9 chr9 27516971 27517827 -90344800 + L1PA15 LINE L1 5293 6160 -5 2187 253 47 0 chr9 27518717 27519255 -90343372 + MLT1F1 LTR MaLR 1 563 -4 2125 129 17 8 chr9 27520300 27520656 -90341971 + L1MA8 LINE L1 5931 6289 -2 31 26 0 0 chr9 27520656 27520694 -90341933 + AT_rich Low_complexity Low_complexity 1 38 0 225 194 32 16 chr9 27521454 27521516 -90341111 + (TA)n Simple_repeat Simple_repeat 2 64 0 21 0 0 0 chr9 27521768 27521789 -90340838 + AT_rich Low_complexity Low_complexity 1 21 0 2175 98 0 19 chr9 27522450 27522757 -90339870 - AluY SINE Alu -8 303 3 488 270 16 0 chr9 27523605 27523731 -90338896 - MIR SINE MIR -4 258 131 26 30 0 0 chr9 27524307 27524340 -90338287 + AT_rich Low_complexity Low_complexity 1 33 0 4212 158 16 11 chr9 27524869 27525577 -90337050 - MER50 LTR ERV1 -23 711 1 340 306 37 9 chr9 27525646 27525754 -90336873 + MIR SINE MIR 36 146 -62 336 336 17 8 chr9 27528147 27528266 -90334361 - MIR SINE MIR -123 139 20 2120 220 5 36 chr9 27528967 27529039 -90333588 - L1P LINE L1 -1070 5076 5003 1952 100 100 0 chr9 27529039 27529309 -90333318 - AluSq SINE Alu -12 301 5 2120 220 5 36 chr9 27529309 27529794 -90332833 - L1P LINE L1 -1143 5003 4536 354 64 0 0 chr9 27530001 27530048 -90332579 - MADE1 DNA Mariner -3 77 31 26 50 0 0 chr9 27530559 27530599 -90332028 + AT_rich Low_complexity Low_complexity 1 40 0 30379 119 12 57 chr9 27530602 27537051 -90325576 + L1PA7 LINE L1 5 6154 0 335 356 10 0 chr9 27537215 27537316 -90325311 + L2 LINE L2 3117 3218 -54 482 277 48 48 chr9 27537991 27538240 -90324387 + L1M4 LINE L1 14 262 -6280 5006 242 51 53 chr9 27538270 27540992 -90321635 - L1M4c LINE L1 -3437 3207 359 604 91 0 0 chr9 27540992 27541080 -90321547 + L1PA13 LINE L1 6073 6160 -3 5006 242 51 53 chr9 27541080 27541390 -90321237 - L1M4c LINE L1 -6285 359 50 5034 180 12 34 chr9 27541404 27543468 -90319159 - L1PA16 LINE L1 -9 6157 4125 194 0 0 37 chr9 27543560 27543587 -90319040 + (CAAAAA)n Simple_repeat Simple_repeat 3 28 0 605 321 57 22 chr9 27543655 27544023 -90318604 + L1M4 LINE L1 485 865 -5677 1966 240 42 54 chr9 27544097 27544763 -90317864 + L1M4 LINE L1 879 1537 -5005 2054 125 7 7 chr9 27544763 27545060 -90317567 + AluSx SINE Alu 1 297 -15 1966 240 42 54 chr9 27545060 27545130 -90317497 + L1M4 LINE L1 1537 1606 -4936 242 387 76 0 chr9 27545133 27545252 -90317375 + MER5B DNA MER1_type 49 176 -2 242 315 120 28 chr9 27545263 27545371 -90317256 - MER5B DNA MER1_type -1 177 60 1672 128 4 51 chr9 27545399 27545672 -90316955 - AluSq SINE Alu -53 260 1 188 160 260 0 chr9 27545674 27545724 -90316903 - MER5B DNA MER1_type -115 63 1 221 349 12 12 chr9 27547967 27548050 -90314577 + L2 LINE L2 2957 3039 -233 185 370 9 19 chr9 27548530 27548638 -90313989 + L2 LINE L2 2904 3010 -262 192 125 0 0 chr9 27550164 27550196 -90312431 + (T)n Simple_repeat Simple_repeat 1 32 0 2252 123 0 0 chr9 27550205 27550515 -90312112 - AluSg SINE Alu 0 310 1 876 342 76 13 chr9 27550872 27551494 -90311133 + L2 LINE L2 2642 3313 0 195 189 27 0 chr9 27551649 27551686 -90310941 + L2 LINE L2 3213 3250 -22 237 317 10 29 chr9 27553053 27553157 -90309470 + MIR SINE MIR 13 114 -148 221 320 40 0 chr9 27553203 27553278 -90309349 + MIR SINE MIR 125 202 -60 225 0 0 0 chr9 27553327 27553352 -90309275 + (CA)n Simple_repeat Simple_repeat 2 26 0 199 147 173 53 chr9 27554450 27554525 -90308102 - L2 LINE L2 -4 3268 3185 544 300 141 14 chr9 27554749 27554969 -90307658 + MIR SINE MIR 15 262 0 979 208 84 44 chr9 27555414 27555776 -90306851 + LTR52 LTR ERVL 1 418 -3 355 289 25 16 chr9 27556092 27556213 -90306414 - MER94 DNA DNA -3 131 10 302 337 105 16 chr9 27556524 27556714 -90305913 + MIR SINE MIR 53 259 -3 341 276 16 8 chr9 27556835 27556958 -90305669 + L1ME LINE L1 5536 5659 -462 184 360 92 7 chr9 27557053 27557206 -90305421 + MIR SINE MIR 97 262 0 2152 119 0 3 chr9 27557386 27557689 -90304938 - AluSx SINE Alu -10 302 1 195 252 63 158 chr9 27559330 27559457 -90303170 - MIR3 SINE MIR -1 207 93 2412 92 0 0 chr9 27559497 27559803 -90302824 - AluSg SINE Alu -4 306 1 300 91 0 0 chr9 27560221 27560265 -90302362 + (CA)n Simple_repeat Simple_repeat 2 45 0 225 338 100 12 chr9 27561830 27561910 -90300717 + L2 LINE L2 3148 3234 -38 321 302 42 0 chr9 27562133 27562229 -90300398 + MIR SINE MIR 89 188 -74 445 192 13 0 chr9 27564482 27564560 -90298067 - Tigger7 DNA MER2_type -651 82 4 252 209 90 0 chr9 27564579 27564646 -90297981 - Zaphod DNA AcHobo -3304 727 655 1035 167 39 0 chr9 27564695 27564875 -90297752 + MER3 DNA MER1_type 10 196 -13 1606 275 22 0 chr9 27564889 27565289 -90297338 - Zaphod DNA AcHobo -3461 570 162 318 87 0 0 chr9 27565335 27565381 -90297246 + (TG)n Simple_repeat Simple_repeat 1 46 0 369 319 85 0 chr9 27566593 27566734 -90295893 + L2 LINE L2 3128 3280 -33 773 280 16 11 chr9 27566777 27566966 -90295661 - MIR SINE MIR -65 197 8 2566 227 27 22 chr9 27567210 27567764 -90294863 + MER68 LTR ERV1 6 562 0 427 318 35 17 chr9 27567955 27568128 -90294499 + MIR SINE MIR 85 260 -2 214 200 22 0 chr9 27568980 27569025 -90293602 + GA-rich Low_complexity Low_complexity 3 48 0 347 344 62 16 chr9 27569340 27569511 -90293116 - MIR SINE MIR -61 147 14 204 423 0 21 chr9 27570329 27570426 -90292201 - MIR SINE MIR -145 117 23 294 305 136 26 chr9 27570787 27570941 -90291686 - L2 LINE L2 -1 3271 3101 337 327 142 58 chr9 27571586 27571932 -90290695 + HAL1 LINE L1 1 375 -2132 1020 300 105 15 chr9 27571935 27573230 -90289397 + HAL1 LINE L1 581 2045 -462 1691 174 16 19 chr9 27573434 27573745 -90288882 - AluSx SINE Alu -2 310 1 25 51 0 0 chr9 27576245 27576284 -90286343 + AT_rich Low_complexity Low_complexity 1 39 0 2805 19 0 6 chr9 27576618 27576938 -90285689 - AluYb8 SINE Alu 0 318 1 460 368 63 9 chr9 27579386 27579609 -90283018 + MIR SINE MIR 22 256 -6 183 333 67 0 chr9 27584361 27584421 -90278206 + L2 LINE L2 3210 3273 -40 302 370 0 7 chr9 27584846 27584981 -90277646 - L2 LINE L2 -444 2870 2737 363 260 29 10 chr9 27585090 27585194 -90277433 + MER94 DNA DNA 24 129 -5 349 219 0 122 chr9 27585846 27586010 -90276617 + L1ME4a LINE L1 5843 5986 -135 549 275 150 0 chr9 27586114 27586274 -90276353 - MER5A DNA MER1_type -2 187 4 628 252 56 0 chr9 27586301 27586444 -90276183 - MER5B DNA MER1_type -16 162 12 25 31 0 0 chr9 27586462 27586494 -90276133 + AT_rich Low_complexity Low_complexity 1 32 0 516 113 21 54 chr9 27586499 27586685 -90275942 + (TA)n Simple_repeat Simple_repeat 1 180 0 299 313 42 0 chr9 27586816 27586912 -90275715 + MIR SINE MIR 89 188 -74 213 368 94 9 chr9 27587559 27587665 -90274962 + MIR3 SINE MIR 87 201 -7 537 253 81 0 chr9 27587748 27587922 -90274705 - MER5A DNA MER1_type 0 189 2 234 0 0 0 chr9 27588692 27588718 -90273909 + (CA)n Simple_repeat Simple_repeat 1 26 0 216 325 0 12 chr9 27588718 27588798 -90273829 + (CATATA)n Simple_repeat Simple_repeat 5 83 0 248 141 0 56 chr9 27589491 27589562 -90273065 - L1MC4 LINE L1 -1339 6703 6637 513 273 89 74 chr9 27591433 27591880 -90270747 + LTR16A1 LTR ERVL 4 457 0 463 317 113 14 chr9 27591918 27592139 -90270488 + MIR SINE MIR 8 250 -12 24 0 0 0 chr9 27592502 27592526 -90270101 + AT_rich Low_complexity Low_complexity 1 24 0 2878 157 72 9 chr9 27592530 27593098 -90269529 - L1MB1 LINE L1 0 6168 5565 188 352 127 0 chr9 27593176 27593318 -90269309 - MIR SINE MIR 0 262 103 325 155 63 0 chr9 27594528 27594736 -90267891 + (TA)n Simple_repeat Simple_repeat 1 221 0 2268 107 0 0 chr9 27594736 27595034 -90267593 - AluSc SINE Alu -10 299 2 2141 111 3 10 chr9 27595090 27595387 -90267240 - AluSq SINE Alu -18 295 1 1576 232 46 81 chr9 27595562 27596117 -90266510 - MLT1F1 LTR MaLR 0 567 33 * 4551 133 43 19 chr9 27596101 27596929 -90265698 + Tigger3(Golem) DNA MER2_type 2181 3028 -1 565 184 37 9 chr9 27597274 27597383 -90265244 - MER46A DNA MER2_type -124 112 1 254 250 0 0 chr9 27597335 27597391 -90265236 + MER46A DNA MER2_type 97 152 -84 * 6637 230 75 33 chr9 27597391 27600344 -90262283 + L1MA9 LINE L1 2533 5601 -1964 1078 275 65 50 chr9 27600447 27600982 -90261645 - L1PBa LINE L1 -6312 551 9 14526 196 13 13 chr9 27600987 27602883 -90259744 + L1PB1 LINE L1 872 2766 -4101 5231 58 37 11 chr9 27602883 27603587 -90259040 + LTR30 LTR ERV1 1 722 0 14526 196 13 13 chr9 27603587 27607494 -90255133 + L1PB1 LINE L1 2766 6859 -8 4987 170 30 41 chr9 27607506 27609659 -90252968 + L1MA9 LINE L1 5594 7731 0 25 31 0 0 chr9 27609668 27609700 -90252927 + AT_rich Low_complexity Low_complexity 1 32 0 282 256 6 122 chr9 27610007 27610187 -90252440 + MLT1I LTR MaLR 229 387 -22 22 35 0 0 chr9 27612667 27612696 -90249931 + AT_rich Low_complexity Low_complexity 1 29 0 255 119 0 0 chr9 27613409 27613451 -90249176 - MER3 DNA MER1_type -160 49 8 1131 227 0 49 chr9 27613525 27613579 -90249048 - L1ME2 LINE L1 -254 5910 5855 2019 121 10 36 chr9 27613579 27613884 -90248743 + AluSq SINE Alu 3 299 -14 1131 227 0 49 chr9 27613884 27614115 -90248512 - L1ME2 LINE L1 -309 5855 5639 * 1739 242 95 9 chr9 27614109 27614770 -90247857 - L1ME2 LINE L1 -1706 4440 3723 261 201 122 79 chr9 27614850 27614989 -90247638 + MLT1L LTR MaLR 471 615 0 191 317 50 50 chr9 27615096 27615197 -90247430 - MIR SINE MIR -49 213 113 935 207 163 82 chr9 27615382 27615800 -90246827 + MER66A LTR ERV1 97 475 -3 2530 65 0 0 chr9 27616147 27616457 -90246170 - AluY SINE Alu -1 310 1 274 306 56 9 chr9 27617247 27617355 -90245272 - MIR SINE MIR -50 212 100 1708 152 37 10 chr9 27617390 27617686 -90244941 - MER57A LTR ERV1 0 403 100 220 319 129 36 chr9 27618607 27618855 -90243772 + L2 LINE L2 2826 3096 -176 227 366 168 0 chr9 27620302 27620403 -90242224 - L2 LINE L2 -16 3256 3139 777 204 25 181 chr9 27620462 27620903 -90241724 + MLT1A2 LTR MaLR 1 372 -2 217 398 73 8 chr9 27621928 27622051 -90240576 - L2 LINE L2 -21 3251 3121 373 266 95 38 chr9 27622251 27622409 -90240218 - MIR SINE MIR -52 210 44 262 303 172 5 chr9 27622428 27622626 -90240001 - MIR SINE MIR -1 261 31 30 27 0 0 chr9 27623880 27623917 -90238710 + AT_rich Low_complexity Low_complexity 1 37 0 430 240 0 0 chr9 27624571 27624646 -90237981 + L2 LINE L2 3198 3272 0 2433 82 0 0 chr9 27625311 27625616 -90237011 + AluSg SINE Alu 1 305 -5 264 288 14 0 chr9 27626380 27626453 -90236174 - L2 LINE L2 -47 3266 3193 1200 273 86 67 chr9 27626480 27627456 -90235171 - L1ME LINE L1 -4981 1089 95 207 0 0 0 chr9 27628184 27628207 -90234420 + (CA)n Simple_repeat Simple_repeat 2 24 0 22 35 0 0 chr9 27628640 27628669 -90233958 + AT_rich Low_complexity Low_complexity 1 29 0 1206 232 134 46 chr9 27628836 27628870 -90233757 - MLT2B1 LTR ERVL 0 520 490 180 0 0 0 chr9 27628870 27628890 -90233737 + (GA)n Simple_repeat Simple_repeat 1 20 0 252 0 0 0 chr9 27628892 27628920 -90233707 + (TG)n Simple_repeat Simple_repeat 2 29 0 1206 232 134 46 chr9 27628920 27629360 -90233267 - MLT2B1 LTR ERVL -30 490 1 330 327 0 9 chr9 27629833 27629940 -90232687 + MIR SINE MIR 41 146 -116 183 331 8 85 chr9 27630020 27630150 -90232477 - L2 LINE L2 -12 3260 3141 253 263 38 0 chr9 27630220 27630300 -90232327 + L1M4 LINE L1 5150 5232 -914 335 286 60 38 chr9 27630495 27630680 -90231947 + L1M4 LINE L1 2120 2308 -3838 844 288 58 56 chr9 27630744 27630835 -90231792 - L2 LINE L2 0 3313 3224 1228 206 121 0 chr9 27630835 27631107 -90231520 + AluJo SINE Alu 4 308 -4 844 288 58 56 chr9 27631107 27631428 -90231199 - L2 LINE L2 -89 3224 2900 624 301 83 0 chr9 27631417 27631633 -90230994 - L2 LINE L2 -563 2751 2518 * 2200 108 0 3 chr9 27631633 27631965 -90230662 + AluSq SINE Alu 1 331 0 1605 151 63 0 chr9 27631974 27632259 -90230368 + L1MA9 LINE L1 5971 6273 -39 307 232 71 18 chr9 27632279 27632391 -90230236 + Charlie7 DNA MER1_type 563 680 -1932 24 53 0 0 chr9 27632391 27632429 -90230198 + AT_rich Low_complexity Low_complexity 1 38 0 307 273 51 51 chr9 27632453 27632706 -90229921 + L1M4 LINE L1 2843 3095 -3051 5044 70 2 0 chr9 27633023 27633938 -90228689 - L1PA5 LINE L1 -512 5642 4726 4052 58 0 12 chr9 27633938 27634456 -90228171 + L1PA5 LINE L1 5640 6151 -3 25 0 0 0 chr9 27634456 27634481 -90228146 + AT_rich Low_complexity Low_complexity 1 25 0 225 383 31 39 chr9 27634601 27634729 -90227898 + L2 LINE L2 3136 3262 -10 359 300 0 42 chr9 27634772 27634892 -90227735 + MIR SINE MIR 33 147 -61 24 0 0 0 chr9 27634927 27634951 -90227676 + AT_rich Low_complexity Low_complexity 1 24 0 746 245 159 32 chr9 27635111 27635611 -90227016 + MLT1G1 LTR MaLR 7 590 0 622 276 68 41 chr9 27637242 27637463 -90225164 + MIR SINE MIR 6 232 -30 330 200 57 14 chr9 27637560 27637630 -90224997 - MIR SINE MIR -165 97 25 330 333 59 7 chr9 27637699 27637834 -90224793 - MIR3 SINE MIR -64 144 3 526 190 152 13 chr9 27638038 27638173 -90224454 + MER5A DNA MER1_type 4 160 -29 981 164 0 99 chr9 27638198 27638430 -90224197 - MER20 DNA MER1_type -4 215 7 309 236 0 56 chr9 27638630 27638719 -90223908 + LTR16A1 LTR ERVL 371 454 -3 24 32 0 0 chr9 27639459 27639490 -90223137 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr9 27640259 27640282 -90222345 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr9 27640586 27640615 -90222012 + AT_rich Low_complexity Low_complexity 1 29 0 703 260 120 19 chr9 27641839 27642224 -90220403 - MLT1J LTR MaLR 0 511 41 360 0 0 0 chr9 27642250 27642290 -90220337 + (CA)n Simple_repeat Simple_repeat 2 41 0 2467 54 0 3 chr9 27642792 27643090 -90219537 - AluY SINE Alu -14 297 1 4768 193 45 12 chr9 27643096 27644601 -90218026 - L1P4 LINE L1 -467 7137 5589 1101 185 15 0 chr9 27644595 27644800 -90217827 - L1 LINE L1 -1865 4281 4074 * 1931 104 92 19 chr9 27644814 27645131 -90217496 + THE1C LTR MaLR 1 340 -35 9428 121 55 36 chr9 27645131 27646662 -90215965 + THE1C-int LTR MaLR 20 1580 0 2139 144 22 16 chr9 27646662 27647031 -90215596 + THE1C LTR MaLR 1 371 -4 2747 240 10 0 chr9 27647032 27647656 -90214971 - L1P4 LINE L1 -2080 5504 4875 5023 224 34 28 chr9 27647687 27649562 -90213065 - L1P4 LINE L1 -3525 4059 2204 394 313 18 22 chr9 27649816 27650044 -90212583 - L1P4 LINE L1 -5269 2305 2084 777 296 53 37 chr9 27650061 27650439 -90212188 - L1P4 LINE L1 -6209 1365 982 229 159 0 0 chr9 27650480 27650524 -90212103 + LTR66 LTR ERVL 393 436 -174 266 299 0 0 chr9 27650544 27650631 -90211996 - L1MC4 LINE L1 -1342 6700 6614 264 200 0 0 chr9 27650633 27650693 -90211934 + (TA)n Simple_repeat Simple_repeat 2 61 0 214 211 0 0 chr9 27650743 27650781 -90211846 + (TA)n Simple_repeat Simple_repeat 1 38 0 754 230 34 49 chr9 27650784 27651049 -90211578 - L1M4 LINE L1 -944 5202 4942 381 300 0 33 chr9 27651062 27651182 -90211445 - MER21B LTR ERV1 -415 448 333 325 264 118 18 chr9 27651238 27651348 -90211279 + L2 LINE L2 3186 3306 -7 361 264 164 0 chr9 27651526 27651666 -90210961 - MIR SINE MIR -25 237 75 307 323 111 14 chr9 27652320 27652501 -90210126 + MIR SINE MIR 8 203 -59 2483 198 20 6 chr9 27654753 27655294 -90207333 + L1MB8 LINE L1 5608 6156 -22 352 261 169 8 chr9 27656112 27656242 -90206385 - L2 LINE L2 -3 3310 3160 193 171 24 24 chr9 27656391 27656432 -90206195 - L2 LINE L2 -375 2938 2898 196 302 101 82 chr9 27656551 27656819 -90205808 - L2 LINE L2 -585 2729 2457 506 267 34 0 chr9 27657147 27657293 -90205334 + LTR16A1 LTR ERVL 307 457 0 1055 298 92 49 chr9 27657438 27658052 -90204575 + L2 LINE L2 1059 1646 -1667 486 0 0 0 chr9 27658052 27658106 -90204521 + (TG)n Simple_repeat Simple_repeat 2 55 0 1055 298 92 49 chr9 27658106 27658188 -90204439 + L2 LINE L2 1646 3313 0 226 175 12 50 chr9 27658400 27658480 -90204147 + MER2 DNA MER2_type 133 209 -136 224 167 21 0 chr9 27658473 27658521 -90204106 + (TTA)n Simple_repeat Simple_repeat 2 50 0 * 208 287 85 32 chr9 27659154 27659248 -90203379 - MIR SINE MIR -64 144 46 252 158 0 70 chr9 27660094 27660151 -90202476 + L2 LINE L2 3261 3313 0 333 291 47 0 chr9 27663030 27663116 -90199511 - L2 LINE L2 -14 3258 3169 225 319 155 33 chr9 27663866 27664170 -90198457 + L2 LINE L2 2632 2972 -342 216 0 0 0 chr9 27664309 27664333 -90198294 + (T)n Simple_repeat Simple_repeat 1 24 0 1818 54 5 0 chr9 27664349 27664572 -90198055 - AluY SINE Alu -87 224 1 489 237 44 0 chr9 27664634 27664748 -90197879 + MER58B DNA MER1_type 222 340 -1 321 252 194 0 chr9 27664750 27664853 -90197774 + L2 LINE L2 3191 3313 0 560 247 98 81 chr9 27666348 27666644 -90195983 - MLT1J LTR MaLR -87 424 124 216 0 0 0 chr9 27666644 27666668 -90195959 + (A)n Simple_repeat Simple_repeat 1 24 0 214 406 0 10 chr9 27666826 27666922 -90195705 + L2 LINE L2 3136 3230 -42 1750 179 17 17 chr9 27667511 27667862 -90194765 + MLT1A1 LTR MaLR 15 365 0 357 278 40 53 chr9 27668091 27668242 -90194385 + MIR SINE MIR 26 174 -88 254 356 91 0 chr9 27670144 27670276 -90192351 - L2 LINE L2 -2 3311 3168 1189 266 14 36 chr9 27670345 27670759 -90191868 - L1ME1 LINE L1 -67 6099 5695 256 312 75 0 chr9 27671137 27671230 -90191397 + L2 LINE L2 3168 3267 -5 316 300 97 48 chr9 27671910 27672137 -90190490 + L2 LINE L2 3076 3313 0 392 331 106 31 chr9 27672573 27672827 -90189800 - L3 LINE CR1 -499 1078 806 221 296 91 38 chr9 27674221 27674353 -90188274 - MIR SINE MIR -123 139 1 1005 341 44 13 chr9 27674365 27674816 -90187811 - L3 LINE CR1 -99 1478 1014 345 294 147 42 chr9 27675216 27675481 -90187146 - L3 LINE CR1 -689 888 596 549 294 138 4 chr9 27675753 27675984 -90186643 - MIR SINE MIR 0 262 1 488 316 29 19 chr9 27677515 27677724 -90184903 - MIR SINE MIR 0 262 52 317 320 111 0 chr9 27678570 27678723 -90183904 + MIR SINE MIR 87 256 -6 1149 301 98 58 chr9 27679006 27679656 -90182971 - MER115 DNA AcHobo -1 692 17 551 200 185 0 chr9 27680451 27680581 -90182046 - MER5B DNA MER1_type -22 156 3 500 246 16 0 chr9 27680797 27680923 -90181704 + MER94 DNA DNA 7 134 0 277 355 169 0 chr9 27680949 27681073 -90181554 + L2 LINE L2 3119 3263 -9 748 252 117 22 chr9 27681088 27681318 -90181309 + MIR SINE MIR 11 262 0 459 274 20 27 chr9 27681408 27681554 -90181073 - MIR SINE MIR 0 262 118 927 146 43 0 chr9 27682111 27682296 -90180331 + L1PBa LINE L1 3 195 -6668 * 2471 135 147 171 chr9 27682281 27682780 -90179847 + L1PBa LINE L1 620 1130 -5733 2306 75 17 0 chr9 27682780 27683073 -90179554 - AluSg1 SINE Alu -11 298 1 1174 139 0 0 chr9 27683073 27683239 -90179388 - AluSq SINE Alu -14 299 134 2267 111 0 10 chr9 27683239 27683545 -90179082 - AluSq SINE Alu -10 303 1 2471 135 147 171 chr9 27683545 27683907 -90178720 + L1PBa LINE L1 1127 1623 -5240 402 283 99 7 chr9 27684034 27684186 -90178441 - L2 LINE L2 -5 3308 3143 293 313 24 0 chr9 27684798 27684881 -90177746 - MIR3 SINE MIR -14 194 110 203 0 37 0 chr9 27685024 27685051 -90177576 + (TG)n Simple_repeat Simple_repeat 1 28 0 1752 162 123 3 chr9 27685126 27685485 -90177142 - MLT2C2 LTR ERVL -62 402 1 294 370 81 6 chr9 27685496 27685669 -90176958 - MIR SINE MIR -75 187 2 349 116 246 0 chr9 27685950 27686019 -90176608 + MLT2D LTR ERVL 58 143 -271 183 222 0 0 chr9 27686037 27686082 -90176545 + (CA)n Simple_repeat Simple_repeat 1 45 0 640 296 37 23 chr9 27686947 27687163 -90175464 + MIR SINE MIR 32 250 -12 1469 227 46 37 chr9 27690204 27690640 -90171987 - L1M1 LINE L1 -6973 592 153 234 0 0 0 chr9 27690643 27690669 -90171958 + (TCTCCC)n Simple_repeat Simple_repeat 6 31 0 5629 122 42 23 chr9 27690673 27692672 -90169955 + SVA Other Other 51 1369 -17 242 28 0 28 chr9 27692680 27692716 -90169911 + (TAA)n Simple_repeat Simple_repeat 2 36 0 702 170 7 54 chr9 27692716 27692863 -90169764 - L1M1 LINE L1 -7409 156 17 1336 311 59 19 chr9 27692873 27693991 -90168636 + L1M4 LINE L1 2788 3950 -2196 7300 177 22 22 chr9 27694636 27696278 -90166349 + L1MA4 LINE L1 3567 5207 -939 5260 148 21 19 chr9 27696291 27697325 -90165302 + L1MA4 LINE L1 5254 6289 -11 25 0 0 0 chr9 27697482 27697507 -90165120 + AT_rich Low_complexity Low_complexity 1 25 0 930 80 0 0 chr9 27697532 27697645 -90164982 + AluSg/x SINE Alu 180 292 -20 21 0 0 0 chr9 27697665 27697686 -90164941 + AT_rich Low_complexity Low_complexity 1 21 0 1750 66 8 12 chr9 27697687 27697929 -90164698 + AluY SINE Alu 36 276 -35 5516 133 12 29 chr9 27698029 27698278 -90164349 - L1MA1 LINE L1 -278 7443 7191 1943 75 60 0 chr9 27698278 27698571 -90164056 - AluY SINE Alu 0 309 1 5516 133 12 29 chr9 27698571 27699667 -90162960 - L1MA1 LINE L1 -530 7191 6134 1946 87 43 20 chr9 27699667 27699967 -90162660 - AluY SINE Alu -4 307 1 5516 133 12 29 chr9 27699967 27700462 -90162165 - L1MA1 LINE L1 -1587 6134 5632 4381 110 10 7 chr9 27700571 27701299 -90161328 - L1MA1 LINE L1 -4487 3078 2349 3208 163 8 0 chr9 27701291 27701886 -90160741 - L1P LINE L1 -3170 2976 2377 * 2703 173 24 6 chr9 27701901 27703451 -90159176 - L1MA1 LINE L1 -5214 2351 625 21 0 0 0 chr9 27704165 27704186 -90158441 + AT_rich Low_complexity Low_complexity 1 21 0 325 348 37 18 chr9 27704802 27704966 -90157661 + L2 LINE L2 2921 3087 -185 217 292 34 0 chr9 27705571 27705660 -90156967 + L3b LINE CR1 1321 1412 -171 333 302 110 80 chr9 27706113 27706477 -90156150 + L1MEd LINE L1 261 635 -5737 490 320 86 22 chr9 27706537 27707025 -90155602 + L1MEd LINE L1 700 1218 -5154 638 247 22 22 chr9 27707035 27707224 -90155403 + MLT1F1 LTR MaLR 3 197 -369 460 176 0 17 chr9 27707245 27707364 -90155263 + CT-rich Low_complexity Low_complexity 2 118 0 941 194 148 0 chr9 27707413 27707630 -90154997 + MLT1F1 LTR MaLR 312 560 -7 607 282 49 80 chr9 27707630 27708032 -90154595 + L1MEd LINE L1 1115 1510 -4862 15971 32 0 0 chr9 27708276 27710721 -90151906 + L1P LINE L1 2248 4692 -1454 315 317 50 19 chr9 27710724 27710751 -90151876 + L1MEd LINE L1 2502 2527 -3855 2333 102 3 0 chr9 27710751 27711055 -90151572 + AluSp SINE Alu 1 305 -8 315 317 50 19 chr9 27711055 27711289 -90151338 + L1MEd LINE L1 2527 2771 -3611 27 0 0 0 chr9 27711403 27711430 -90151197 + AT_rich Low_complexity Low_complexity 1 27 0 324 314 46 26 chr9 27711430 27711583 -90151044 + L1MEd LINE L1 2881 3036 -3346 1184 126 30 0 chr9 27711607 27711806 -90150821 - L1MA1 LINE L1 0 6302 6098 8366 197 21 1 chr9 27711989 27714139 -90148488 - L1 LINE L1 -2140 5425 3231 255 337 10 20 chr9 27714403 27714504 -90148123 - L2 LINE L2 0 3272 3173 482 335 38 8 chr9 27714784 27714984 -90147643 + MIR SINE MIR 3 206 -56 309 297 138 43 chr9 27715154 27715386 -90147241 + L2 LINE L2 3043 3296 -17 225 256 24 61 chr9 27715626 27715708 -90146919 + L2 LINE L2 3193 3271 -1 1005 173 17 11 chr9 27716998 27717177 -90145450 - AluJo SINE Alu -132 180 1 292 313 83 46 chr9 27717488 27717705 -90144922 + L2 LINE L2 2252 2476 -838 2266 110 0 16 chr9 27717913 27718230 -90144397 - AluSx SINE Alu 0 312 1 202 373 63 47 chr9 27718554 27718809 -90143818 + L2 LINE L2 2485 2743 -571 1314 173 79 47 chr9 27719253 27719530 -90143097 + AluJo SINE Alu 1 286 -26 186 189 0 0 chr9 27720032 27720069 -90142558 + A-rich Low_complexity Low_complexity 1 37 0 2717 26 0 3 chr9 27720119 27720427 -90142200 + AluYa5 SINE Alu 1 307 -4 1083 323 74 35 chr9 27722522 27723073 -90139554 + L3 LINE CR1 2 574 -1003 220 314 137 13 chr9 27723204 27723357 -90139270 + L3 LINE CR1 934 1105 -472 2011 156 6 16 chr9 27723360 27723680 -90138947 + MER1B DNA MER1_type 23 339 0 226 344 0 0 chr9 27723833 27723894 -90138733 + L3 LINE CR1 1411 1471 -106 21 0 0 0 chr9 27724425 27724446 -90138181 + AT_rich Low_complexity Low_complexity 1 21 0 969 191 22 16 chr9 27725437 27725620 -90137007 - MER5A DNA MER1_type 0 189 6 281 292 29 166 chr9 27725603 27725880 -90136747 + L2 LINE L2 3028 3266 -6 * 180 0 0 0 chr9 27725927 27725947 -90136680 + (GA)n Simple_repeat Simple_repeat 2 21 0 * 201 39 0 0 chr9 27725946 27725972 -90136655 + (TG)n Simple_repeat Simple_repeat 2 27 0 2052 162 26 6 chr9 27725977 27726317 -90136310 - MER7A DNA MER2_type 0 346 2 213 175 0 0 chr9 27726319 27726359 -90136268 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 311 285 114 19 chr9 27726649 27726807 -90135820 - L1MCb LINE L1 -4848 1197 1025 192 364 50 43 chr9 27728556 27728696 -90133931 + MIR SINE MIR 20 160 -102 23 0 0 0 chr9 27728696 27728719 -90133908 + AT_rich Low_complexity Low_complexity 1 23 0 232 206 44 44 chr9 27728845 27728913 -90133714 - MLT1G1 LTR MaLR -28 567 500 233 276 92 10 chr9 27729096 27729194 -90133433 - MLT1I LTR MaLR -240 169 64 34 0 0 0 chr9 27729598 27729632 -90132995 + AT_rich Low_complexity Low_complexity 1 34 0 225 0 0 0 chr9 27729632 27729657 -90132970 + (TA)n Simple_repeat Simple_repeat 2 26 0 971 138 6 19 chr9 27729890 27730049 -90132578 - THE1-int LTR MaLR -183 1397 1241 302 192 0 0 chr9 27730313 27730365 -90132262 - MLT1E3 LTR MaLR -572 52 1 21 36 0 0 chr9 27730373 27730401 -90132226 + AT_rich Low_complexity Low_complexity 1 28 0 333 330 124 58 chr9 27730449 27730883 -90131744 - L3 LINE CR1 -24 1553 1091 263 260 40 20 chr9 27730942 27731042 -90131585 + L1P LINE L1 3828 3929 -2217 22 0 0 0 chr9 27731042 27731064 -90131563 + AT_rich Low_complexity Low_complexity 1 22 0 186 133 0 0 chr9 27731526 27731556 -90131071 + (TA)n Simple_repeat Simple_repeat 1 30 0 313 312 73 65 chr9 27731578 27731991 -90130636 + L1M4 LINE L1 4428 4843 -1303 7687 94 29 5 chr9 27732778 27733964 -90128663 + L1PB1 LINE L1 1529 2742 -4121 11061 187 15 13 chr9 27733976 27737409 -90125218 + L1PB1 LINE L1 3431 6864 -3 377 304 27 133 chr9 27737431 27737806 -90124821 - L2 LINE L2 -5 3267 2933 1032 136 5 15 chr9 27738113 27738311 -90124316 + L1MA8 LINE L1 6078 6273 -18 5660 166 36 10 chr9 27738311 27739876 -90122751 - L1MA4 LINE L1 -14 6286 4666 1106 190 112 20 chr9 27739876 27740171 -90122456 + MER31A LTR ERV1 164 485 0 248 149 0 21 chr9 27740328 27740375 -90122252 + HAL1 LINE L1 2104 2149 -358 349 300 50 31 chr9 27740403 27740563 -90122064 + L1ME3 LINE L1 5724 5886 -276 24 32 0 0 chr9 27740571 27740602 -90122025 + AT_rich Low_complexity Low_complexity 1 31 0 223 294 322 0 chr9 27740875 27741021 -90121606 + MIR SINE MIR 59 251 -11 533 238 25 0 chr9 27741413 27741535 -90121092 + MER94 DNA DNA 1 125 -9 317 246 156 25 chr9 27741545 27741667 -90120960 - MIR SINE MIR -74 188 51 217 299 26 8 chr9 27742542 27742633 -90119994 + MIR SINE MIR 47 140 -68 664 266 15 70 chr9 27742635 27742834 -90119793 - MER5A DNA MER1_type 0 189 2 289 279 29 10 chr9 27745220 27745324 -90117303 + L2 LINE L2 2680 2785 -529 355 214 325 0 chr9 27745324 27745450 -90117177 + MIR SINE MIR 80 246 -16 371 377 49 38 chr9 27745494 27745863 -90116764 + L2 LINE L2 2852 3224 -48 574 283 107 37 chr9 27745899 27746143 -90116484 - MLT1I LTR MaLR -49 360 100 290 351 18 9 chr9 27746635 27746746 -90115881 - MIR3 SINE MIR -85 123 12 292 232 2 5 chr9 27746794 27746868 -90115759 - MIR SINE MIR -65 143 75 186 284 40 40 chr9 27746909 27746983 -90115644 + L2 LINE L2 3239 3312 -1 186 167 0 0 chr9 27746984 27747020 -90115607 + (AATTG)n Simple_repeat Simple_repeat 2 37 0 230 313 200 13 chr9 27747796 27747946 -90114681 + MIR SINE MIR 20 197 -65 524 281 21 46 chr9 27748242 27748439 -90114188 - MIR SINE MIR -40 222 33 409 235 0 0 chr9 27748624 27748705 -90113922 - MER63 DNA MER1_type -84 752 672 197 282 28 56 chr9 27748706 27748777 -90113850 - L2 LINE L2 -272 3000 2932 3941 163 108 94 chr9 27749029 27749600 -90113027 - L1MC3 LINE L1 -1 7784 7222 309 171 40 26 chr9 27749600 27749676 -90112951 - MLT1F1 LTR MaLR -456 111 35 3941 163 108 94 chr9 27749676 27750144 -90112483 - L1MC3 LINE L1 -563 7222 6655 1176 177 120 57 chr9 27750145 27750479 -90112148 - MLT1A1 LTR MaLR 0 365 11 2827 182 56 14 chr9 27750489 27751078 -90111549 - L1MC3 LINE L1 -1127 6658 6045 303 341 54 0 chr9 27753070 27753199 -90109428 + L2 LINE L2 3177 3312 -1 23 33 0 0 chr9 27754596 27754626 -90108001 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr9 27755055 27755079 -90107548 + AT_rich Low_complexity Low_complexity 1 24 0 2192 115 56 11 chr9 27755129 27755486 -90107141 - THE1C LTR MaLR -2 373 1 2068 123 31 0 chr9 27755542 27755834 -90106793 - AluSx SINE Alu -11 301 1 1929 157 219 41 chr9 27756073 27756565 -90106062 - LTR18B LTR ERVL -34 580 1 597 269 137 23 chr9 27757165 27757384 -90105243 + MIR SINE MIR 17 260 -2 1209 113 72 23 chr9 27757610 27757641 -90104986 - L1MA1 LINE L1 0 6302 6274 192 40 0 0 chr9 27757641 27757666 -90104961 + (TA)n Simple_repeat Simple_repeat 1 25 0 1209 113 72 23 chr9 27757666 27757855 -90104772 - L1MA1 LINE L1 -28 6274 6071 308 320 227 20 chr9 27757878 27758081 -90104546 - MIR SINE MIR -12 250 6 202 333 0 0 chr9 27758274 27758331 -90104296 - MER5A DNA MER1_type -98 91 35 263 283 131 10 chr9 27758487 27758586 -90104041 - MIR SINE MIR -120 142 32 2738 71 0 0 chr9 27758795 27759147 -90103480 - L1PA6 LINE L1 -5 6149 5798 244 321 10 114 chr9 27759949 27760142 -90102485 - L2 LINE L2 0 3272 3100 314 343 19 8 chr9 27761629 27761772 -90100855 + MIR SINE MIR 2 147 -67 1090 232 129 72 chr9 27761776 27762250 -90100377 + MLT1D LTR MaLR 5 505 0 272 297 0 33 chr9 27762645 27762736 -90099891 - MIR SINE MIR 0 262 175 22 0 0 0 chr9 27762996 27763018 -90099609 + AT_rich Low_complexity Low_complexity 1 22 0 259 329 53 86 chr9 27763201 27763538 -90099089 + L2 LINE L2 2934 3259 -13 224 367 0 0 chr9 27763627 27763706 -90098921 - L2 LINE L2 -3 3310 3232 498 214 0 19 chr9 27763835 27763938 -90098689 + MER5A DNA MER1_type 5 105 -84 190 255 0 0 chr9 27763950 27763997 -90098630 + MIR SINE MIR 216 262 0 714 255 124 92 chr9 27764535 27765025 -90097602 - MLT1J LTR MaLR -4 507 2 301 311 0 25 chr9 27765077 27765196 -90097431 - L2 LINE L2 -970 2344 2229 254 284 55 28 chr9 27765830 27765939 -90096688 + L3 LINE CR1 1092 1203 -374 4981 145 16 5 chr9 27766060 27767557 -90095070 + L1MA8 LINE L1 4592 6107 -184 1100 202 108 23 chr9 27767558 27767918 -90094709 + MSTC LTR MaLR 1 423 -5 721 190 39 0 chr9 27767923 27768102 -90094525 + L1MA8 LINE L1 6104 6289 -2 350 339 42 25 chr9 27768179 27768624 -90094003 + L1M4 LINE L1 3976 4433 -1713 491 222 9 19 chr9 27769640 27769748 -90092879 + L1ME LINE L1 5536 5642 -528 1651 353 74 12 chr9 27769765 27770831 -90091796 - L2 LINE L2 0 3313 2174 998 244 79 16 chr9 27771341 27771656 -90090971 + LTR16A LTR ERVL 113 447 -3 1120 208 29 45 chr9 27772266 27772612 -90090015 + MER33 DNA MER1_type 1 319 -5 288 0 0 0 chr9 27772872 27772904 -90089723 + (TTTG)n Simple_repeat Simple_repeat 4 35 0 2597 246 17 31 chr9 27773200 27773847 -90088780 + L1PA15 LINE L1 11 648 -6933 2065 174 28 0 chr9 27773847 27774204 -90088423 + MER50 LTR ERV1 1 367 -367 1361 174 71 35 chr9 27774200 27774510 -90088117 + LTR9 LTR ERV1 292 612 0 * 17506 197 23 12 chr9 27774522 27780093 -90082534 + L1PA15 LINE L1 1968 7601 -2 374 200 80 40 chr9 27780611 27780736 -90081891 - MER102a DNA MER1_type -2 328 199 1543 143 95 76 chr9 27780767 27781124 -90081503 - L1MA9 LINE L1 -13 6299 5936 5555 57 4 0 chr9 27781406 27782105 -90080522 + L1PA7 LINE L1 5453 6154 0 212 100 25 0 chr9 27782769 27782809 -90079818 + (GA)n Simple_repeat Simple_repeat 2 42 0 182 315 0 0 chr9 27784102 27784156 -90078471 + MIR SINE MIR 44 97 -111 2110 119 17 0 chr9 27784357 27784651 -90077976 + AluSc SINE Alu 4 302 -7 397 200 0 0 chr9 27784844 27784914 -90077713 - L2 LINE L2 -50 3222 3153 244 342 63 32 chr9 27785422 27785580 -90077047 - L2 LINE L2 -11 3302 3140 277 221 0 0 chr9 27785585 27785653 -90076974 - MLT1L LTR MaLR -4 611 544 1077 265 73 9 chr9 27785803 27786131 -90076496 + L1MC4 LINE L1 6458 6806 -1236 856 249 6 4 chr9 27786131 27786348 -90076279 + L1MC4 LINE L1 7485 7788 -207 1853 135 54 96 chr9 27787350 27787691 -90074936 + MLT1B LTR MaLR 1 324 -66 2219 113 0 0 chr9 27787691 27788002 -90074625 - AluSx SINE Alu -1 311 1 1853 135 54 96 chr9 27788002 27788067 -90074560 + MLT1B LTR MaLR 324 390 0 28 0 0 0 chr9 27788249 27788277 -90074350 + AT_rich Low_complexity Low_complexity 1 28 0 289 353 49 22 chr9 27789282 27789466 -90073161 + L2 LINE L2 3122 3310 -3 1480 194 41 9 chr9 27789957 27790276 -90072351 + L1MB5 LINE L1 5536 5864 -310 4186 157 13 12 chr9 27790279 27791045 -90071582 - L1MA8 LINE L1 -4 6287 5521 893 223 5 28 chr9 27791045 27791260 -90071367 + L1MB5 LINE L1 5959 6168 -6 2665 136 22 11 chr9 27791589 27792037 -90070590 + L1MA10 LINE L1 5880 6332 -2 2138 94 0 85 chr9 27792046 27792375 -90070252 + AluSg SINE Alu 1 301 -9 6883 66 6 0 chr9 27792375 27793509 -90069118 + L1PA7 LINE L1 5014 6154 0 271 195 98 49 chr9 27794160 27794283 -90068344 - L1ME4a LINE L1 -2 6119 5991 245 359 18 100 chr9 27794511 27794731 -90067896 + L2 LINE L2 3009 3210 -62 2671 229 93 25 chr9 27795182 27795751 -90066876 + L1MEc LINE L1 44 680 -5716 2658 107 0 3 chr9 27795751 27796114 -90066513 + THE1B LTR MaLR 1 362 -2 2671 229 93 25 chr9 27796114 27796311 -90066316 + L1MEc LINE L1 680 862 -5534 24 53 0 0 chr9 27797308 27797346 -90065281 + GC_rich Low_complexity Low_complexity 1 38 0 240 185 0 0 chr9 27797944 27797998 -90064629 + (CA)n Simple_repeat Simple_repeat 1 54 0 2264 107 0 0 chr9 27798285 27798583 -90064044 + AluSx SINE Alu 1 298 -14 523 305 8 0 chr9 27798600 27798728 -90063899 + L2 LINE L2 3176 3304 -9 1059 283 66 42 chr9 27798803 27799256 -90063371 - MLT1J LTR MaLR -17 494 31 572 100 0 0 chr9 27799706 27799786 -90062841 - MADE1 DNA Mariner 0 80 1 1077 260 22 6 chr9 27801646 27801969 -90060658 + L1MA9 LINE L1 5937 6264 -48 3932 186 64 9 chr9 27801978 27802795 -90059832 - L1MB5 LINE L1 -31 6143 5282 225 333 13 13 chr9 27803050 27803125 -90059502 - L2 LINE L2 -3 3269 3195 1362 176 48 65 chr9 27803720 27804010 -90058617 + AluJo SINE Alu 5 289 -23 39 0 0 0 chr9 27804011 27804050 -90058577 + AT_rich Low_complexity Low_complexity 1 39 0 425 366 17 6 chr9 27804050 27804222 -90058405 + MIR SINE MIR 3 176 -86 9192 143 26 8 chr9 27804724 27806245 -90056382 - Ricksha DNA DNA -7 3239 1692 310 95 0 0 chr9 27806249 27806291 -90056336 - Ricksha DNA DNA -2963 283 242 570 189 9 0 chr9 27806310 27806416 -90056211 - Ricksha DNA DNA -3132 114 8 249 231 108 0 chr9 27806504 27806569 -90056058 + LTR50 LTR ERVL 212 283 -512 724 239 147 7 chr9 27806647 27806932 -90055695 + LTR50 LTR ERVL 471 795 0 647 269 64 5 chr9 27807137 27807356 -90055271 + L1MB8 LINE L1 5941 6172 -6 403 346 54 39 chr9 27807695 27807900 -90054727 - MIR SINE MIR -6 256 49 22 0 0 0 chr9 27809111 27809133 -90053494 + AT_rich Low_complexity Low_complexity 1 22 0 363 60 0 0 chr9 27809431 27809481 -90053146 + (CATA)n Simple_repeat Simple_repeat 2 51 0 272 253 0 13 chr9 27809636 27809711 -90052916 - LTR33A LTR ERVL -4 519 446 330 286 18 28 chr9 27810158 27810327 -90052300 - MLT1I LTR MaLR -263 175 12 2417 159 24 5 chr9 27810975 27811390 -90051237 - MSTB LTR MaLR -3 423 1 342 357 180 24 chr9 27811732 27812326 -90050301 + L2 LINE L2 1947 2633 -681 344 336 0 9 chr9 27813159 27813275 -90049352 - MIR3 SINE MIR -6 202 88 180 125 0 0 chr9 27813858 27813890 -90048737 + (CAA)n Simple_repeat Simple_repeat 3 34 0 731 217 127 0 chr9 27814200 27814357 -90048270 - AluJb SINE Alu -6 306 130 198 71 0 0 chr9 27814363 27814391 -90048236 + (TTG)n Simple_repeat Simple_repeat 2 29 0 300 324 18 65 chr9 27814410 27814580 -90048047 + L3 LINE CR1 1344 1505 -72 4737 152 38 19 chr9 27814580 27815865 -90046762 + L1MA5 LINE L1 4876 6193 -107 571 215 8 0 chr9 27817181 27817311 -90045316 - MER97c DNA MER1_type? -915 175 45 201 282 125 24 chr9 27817911 27818085 -90044542 - MIR SINE MIR -72 136 3 4783 170 38 27 chr9 27818718 27820718 -90041909 - L1MA9 LINE L1 -1 6375 4356 16889 30 0 0 chr9 27820719 27822846 -90039781 + L1P LINE L1 2134 4260 -1886 2783 148 8 24 chr9 27822854 27822935 -90039692 - L1MA9 LINE L1 -1870 4340 4259 2721 81 3 18 chr9 27822935 27823316 -90039311 - L1PA8A LINE L1 -1 6130 5756 2783 148 8 24 chr9 27823316 27823739 -90038888 - L1MA9 LINE L1 -1951 4259 3844 769 244 6 0 chr9 27823739 27823899 -90038728 - FRAM SINE Alu -5 161 1 2133 146 39 17 chr9 27823925 27824281 -90038346 - THE1B LTR MaLR 0 364 1 9876 109 43 8 chr9 27824281 27825704 -90036923 - THE1B-int LTR MaLR 0 1580 99 1785 146 55 55 chr9 27825704 27826068 -90036559 - THE1B LTR MaLR 0 364 1 9876 109 43 8 chr9 27826068 27826171 -90036456 - THE1B-int LTR MaLR -1481 99 1 2215 134 33 19 chr9 27826171 27826530 -90036097 - THE1B LTR MaLR 0 364 1 645 171 36 0 chr9 27826530 27826640 -90035987 - FLAM_C SINE Alu -18 115 1 3801 233 74 16 chr9 27826642 27827508 -90035119 - L1MA9 LINE L1 -2361 3849 2882 2073 150 0 0 chr9 27827508 27827801 -90034826 - AluSx SINE Alu -19 293 1 3801 233 74 16 chr9 27827801 27828214 -90034413 - L1MA9 LINE L1 -3328 2882 2495 4887 233 84 40 chr9 27828219 27828537 -90034090 - L1MA9 LINE L1 -4357 1854 1552 2259 89 0 49 chr9 27828537 27828862 -90033765 - AluSq SINE Alu -2 311 3 4887 233 84 40 chr9 27828862 27828873 -90033754 - L1MA9 LINE L1 -4659 1552 1543 1799 69 52 0 chr9 27828873 27829136 -90033491 - AluY SINE Alu 0 315 41 4887 233 84 40 chr9 27829136 27830608 -90032019 - L1MA9 LINE L1 -4668 1543 2 2541 75 0 0 chr9 27830875 27831183 -90031444 - AluY SINE Alu -3 308 1 285 340 32 45 chr9 27831461 27831617 -90031010 + L2 LINE L2 2897 3050 -222 261 0 0 0 chr9 27831796 27831825 -90030802 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 362 261 11 0 chr9 27833687 27833779 -90028848 - MER20 DNA MER1_type -9 210 118 2387 114 8 16 chr9 27835153 27835522 -90027105 + THE1C LTR MaLR 1 366 -9 1816 241 104 34 chr9 27835594 27836168 -90026459 + MLT1G1 LTR MaLR 1 549 0 180 97 0 0 chr9 27836265 27836296 -90026331 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 2335 82 0 10 chr9 27836296 27836590 -90026037 - AluY SINE Alu -20 291 1 25 65 0 0 chr9 27836610 27836656 -90025971 + AT_rich Low_complexity Low_complexity 1 46 0 413 291 57 24 chr9 27836781 27836991 -90025636 + L1ME4a LINE L1 5879 6095 -26 1238 239 3 58 chr9 27838438 27838798 -90023829 + MLT2B1 LTR ERVL 1 340 -180 2408 84 0 0 chr9 27839154 27839452 -90023175 + AluY SINE Alu 1 298 -13 1358 273 50 39 chr9 27839815 27840350 -90022277 + MER68 LTR ERV1 10 550 -12 399 278 112 58 chr9 27840373 27840578 -90022049 + MER68-int LTR ERV1 18 233 -3958 * 857 298 36 28 chr9 27840422 27840784 -90021843 + HERVL68 LTR ERVL 28 392 -2645 * 3898 211 50 40 chr9 27840751 27841877 -90020750 + HERVL68 LTR ERVL 517 1653 -1384 797 175 41 6 chr9 27841882 27842053 -90020574 + HERVL68 LTR ERVL 2842 3018 -19 1192 211 52 4 chr9 27842058 27842309 -90020318 + MER68 LTR ERV1 6 268 -294 1367 248 26 28 chr9 27842320 27842761 -90019866 + MLT1C LTR MaLR 6 447 -20 1746 142 78 36 chr9 27842761 27842953 -90019674 + THE1C LTR MaLR 1 184 -191 231 36 0 0 chr9 27842953 27842981 -90019646 + (TC)n Simple_repeat Simple_repeat 1 28 0 1746 142 78 36 chr9 27842981 27843148 -90019479 + THE1C LTR MaLR 184 375 0 1367 248 26 28 chr9 27843148 27843169 -90019458 + MLT1C LTR MaLR 447 467 0 699 277 21 35 chr9 27843171 27843460 -90019167 + MER68 LTR ERV1 272 556 -6 364 315 89 65 chr9 27843791 27844164 -90018463 + L1MEd LINE L1 931 1273 -1234 23 54 0 0 chr9 27844474 27844511 -90018116 + AT_rich Low_complexity Low_complexity 1 37 0 25 31 0 0 chr9 27844794 27844826 -90017801 + AT_rich Low_complexity Low_complexity 1 32 0 783 172 0 0 chr9 27844921 27845043 -90017584 + FLAM_A SINE Alu 1 122 -11 311 300 88 6 chr9 27845208 27845368 -90017259 + L1MEd LINE L1 2341 2513 -3633 630 274 112 82 chr9 27845484 27846009 -90016618 + L1MEd LINE L1 2651 3191 -2955 746 125 9 0 chr9 27846082 27846194 -90016433 - LTR62 LTR ERVK -2 717 605 6925 51 2 2 chr9 27846294 27847380 -90015247 + L1P2 LINE L1 4457 5542 -612 1571 102 49 11 chr9 27847483 27847747 -90014880 - LTR62 LTR ERVK -445 274 1 311 278 78 41 chr9 27847758 27848103 -90014524 + L1MEd LINE L1 3397 3754 -2392 1206 185 141 7 chr9 27848106 27848403 -90014224 + MLT1C LTR MaLR 1 337 -130 1616 167 3 45 chr9 27848418 27848601 -90014026 + AluJb SINE Alu 2 168 -144 8307 54 4 4 chr9 27848601 27849608 -90013019 - LTR13 LTR ERVK 0 1007 1 1616 167 3 45 chr9 27849608 27849735 -90012892 + AluJb SINE Alu 168 299 -13 439 233 8 42 chr9 27849743 27849863 -90012764 + MLT1C LTR MaLR 352 467 0 673 242 141 58 chr9 27850170 27850497 -90012130 - MLT1H LTR MaLR 0 549 196 2065 120 10 20 chr9 27851479 27851778 -90010849 + AluSc SINE Alu 1 296 -13 751 244 49 0 chr9 27852547 27852752 -90009875 - L1ME3 LINE L1 -8 6154 5940 2586 236 121 19 chr9 27852755 27853674 -90008953 - L1MEc LINE L1 -5373 1023 11 553 197 33 0 chr9 27853652 27853774 -90008853 - L1ME3 LINE L1 -214 6017 5892 * 23 54 0 0 chr9 27853807 27853844 -90008783 + AT_rich Low_complexity Low_complexity 1 37 0 24 67 0 0 chr9 27854699 27854744 -90007883 + AT_rich Low_complexity Low_complexity 1 45 0 1582 130 9 0 chr9 27855086 27855309 -90007318 + AluSp SINE Alu 65 289 -24 421 136 0 0 chr9 27855446 27855512 -90007115 + Alu SINE Alu 223 288 -23 6792 50 27 1 chr9 27856583 27858300 -90004327 + L1PA7 LINE L1 4409 6154 0 185 197 0 115 chr9 27860092 27860153 -90002474 - MIR SINE MIR -100 162 109 213 121 0 0 chr9 27861060 27861093 -90001534 + (TC)n Simple_repeat Simple_repeat 1 33 0 2431 84 0 0 chr9 27862577 27862885 -89999742 + AluY SINE Alu 1 308 -3 329 347 167 7 chr9 27863626 27863914 -89998713 - L2 LINE L2 -342 2972 2639 30 59 0 0 chr9 27865351 27865402 -89997225 + AT_rich Low_complexity Low_complexity 1 51 0 189 325 0 52 chr9 27867147 27867224 -89995403 + MIR SINE MIR 179 251 -11 2680 42 0 0 chr9 27868703 27869033 -89993594 - AluY SINE Alu 0 330 1 207 0 0 0 chr9 27869130 27869153 -89993474 + (A)n Simple_repeat Simple_repeat 1 23 0 2466 129 8 30 chr9 27869336 27869708 -89992919 - THE1B LTR MaLR 0 364 1 260 348 84 22 chr9 27871726 27871904 -89990723 + L3 LINE CR1 1328 1516 -61 319 75 0 0 chr9 27872222 27872262 -89990365 + LTR23 LTR ERV1 320 359 -78 27 0 0 0 chr9 27872262 27872289 -89990338 + AT_rich Low_complexity Low_complexity 1 27 0 26 0 0 0 chr9 27874174 27874200 -89988427 + AT_rich Low_complexity Low_complexity 1 26 0 185 159 23 0 chr9 27875485 27875529 -89987098 + CT-rich Low_complexity Low_complexity 1 45 0 2568 44 3 0 chr9 27875681 27875979 -89986648 - AluY SINE Alu -12 299 1 315 266 195 8 chr9 27878912 27879040 -89983587 + MIR SINE MIR 44 195 -67 236 368 58 0 chr9 27879036 27879123 -89983504 - L2 LINE L2 -34 3238 3147 * 623 277 61 53 chr9 27879999 27880378 -89982249 + L1ME4a LINE L1 5582 5963 -158 226 250 0 22 chr9 27880409 27880501 -89982126 + L1MC4 LINE L1 6614 6703 -1339 243 256 98 0 chr9 27880523 27880605 -89982022 + L1MC4 LINE L1 6614 6703 -1339 222 214 0 0 chr9 27880610 27880652 -89981975 + (CATATA)n Simple_repeat Simple_repeat 5 46 0 324 222 128 44 chr9 27880652 27880832 -89981795 + L1ME4a LINE L1 5927 6121 0 337 275 89 27 chr9 27883140 27883346 -89979281 + MIR SINE MIR 20 242 -20 211 326 79 22 chr9 27884473 27884562 -89978065 - L3 LINE CR1 -225 1352 1259 341 137 0 123 chr9 27885441 27885514 -89977113 - MADE1 DNA Mariner -2 78 15 1029 267 112 46 chr9 27886676 27886748 -89975879 + L2 LINE L2 1177 1243 -2071 1821 136 94 28 chr9 27886748 27887100 -89975527 - THE1C LTR MaLR 0 375 1 1029 267 112 46 chr9 27887100 27887413 -89975214 + L2 LINE L2 1243 1605 -1709 1641 215 31 22 chr9 27887413 27887771 -89974856 + MLT1A1 LTR MaLR 5 365 0 1029 267 112 46 chr9 27887771 27887882 -89974745 + L2 LINE L2 1605 1707 -1607 342 115 0 0 chr9 27887925 27887977 -89974650 + (TG)n Simple_repeat Simple_repeat 1 52 0 372 301 12 58 chr9 27887985 27888021 -89974606 - MIR3 SINE MIR -21 187 151 716 250 23 23 chr9 27888021 27888197 -89974430 - MER5B DNA MER1_type -1 177 2 372 301 12 58 chr9 27888197 27888333 -89974294 - MIR3 SINE MIR -57 151 23 541 264 50 33 chr9 27889099 27889281 -89973346 + MIR SINE MIR 8 192 -70 471 254 97 18 chr9 27889506 27889671 -89972956 + MIR SINE MIR 23 200 -62 505 273 87 61 chr9 27890341 27890686 -89971941 - LTR16A1 LTR ERVL 0 457 104 415 257 131 0 chr9 27891223 27891398 -89971229 + MER5C DNA MER1_type 127 324 0 639 241 32 80 chr9 27892487 27892736 -89969891 - MLT1K LTR MaLR -16 572 336 706 86 0 38 chr9 27893269 27893374 -89969253 - L1PA11 LINE L1 0 6174 6074 607 274 125 5 chr9 27894859 27895060 -89967567 + MIR SINE MIR 28 236 -26 731 283 93 28 chr9 27895466 27896051 -89966576 + L2 LINE L2 2647 3267 -5 205 323 32 11 chr9 27896116 27896209 -89966418 - L3 LINE CR1 -214 1363 1269 203 88 29 0 chr9 27896234 27896268 -89966359 + (TGGG)n Simple_repeat Simple_repeat 2 36 0 369 136 0 0 chr9 27896271 27896337 -89966290 + (GGGA)n Simple_repeat Simple_repeat 3 68 0 279 219 237 0 chr9 27897349 27897463 -89965164 - MIR SINE MIR 0 262 122 345 282 54 47 chr9 27897509 27897658 -89964969 - MIR SINE MIR -93 169 20 213 215 41 93 chr9 27898383 27898493 -89964134 + MIR SINE MIR 43 147 -104 2121 141 0 0 chr9 27898537 27898835 -89963792 + AluSx SINE Alu 1 298 -14 209 0 0 89 chr9 27898836 27898881 -89963746 + (TCTCCC)n Simple_repeat Simple_repeat 1 41 0 8776 61 14 151 chr9 27899044 27900647 -89961980 + SVA Other Other 3 1385 -1 554 336 39 57 chr9 27900722 27901005 -89961622 + L2 LINE L2 2995 3272 0 21 104 0 0 chr9 27901024 27901101 -89961526 + AT_rich Low_complexity Low_complexity 1 77 0 1228 216 110 58 chr9 27902006 27902482 -89960145 - MER39 LTR ERV1 -26 681 1 1616 190 3 13 chr9 27902633 27902943 -89959684 - AluJb SINE Alu -5 307 1 243 279 252 0 chr9 27902946 27903057 -89959570 + MIR SINE MIR 116 254 -8 201 94 0 0 chr9 27903057 27903089 -89959538 + (TTA)n Simple_repeat Simple_repeat 2 33 0 632 312 111 4 chr9 27903233 27903467 -89959160 - L2 LINE L2 -205 3108 2850 869 225 26 35 chr9 27903810 27904041 -89958586 - MIR SINE MIR 0 262 34 235 240 20 0 chr9 27906172 27906222 -89956405 - L2 LINE L2 -1 3271 3221 21 0 0 0 chr9 27906677 27906698 -89955929 + AT_rich Low_complexity Low_complexity 1 21 0 864 248 31 5 chr9 27906749 27906971 -89955656 + MIR SINE MIR 21 248 -14 1055 309 114 50 chr9 27906981 27907221 -89955406 + L3 LINE CR1 216 439 -1138 409 212 26 139 chr9 27907221 27907372 -89955255 + MER94 DNA DNA 1 134 0 1055 309 114 50 chr9 27907372 27907816 -89954811 + L3 LINE CR1 439 944 -633 375 195 273 23 chr9 27907924 27908052 -89954575 + L3 LINE CR1 1407 1566 -11 283 297 22 0 chr9 27909861 27909952 -89952675 + MIR SINE MIR 57 149 -113 217 290 14 0 chr9 27911066 27911135 -89951492 + MIR SINE MIR 177 246 -16 206 360 90 0 chr9 27911184 27911284 -89951343 + L2 LINE L2 3159 3267 -5 304 50 0 25 chr9 27911424 27911464 -89951163 - U2 snRNA snRNA -149 39 1 210 71 0 0 chr9 27913278 27913306 -89949321 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 2170 96 0 0 chr9 27914761 27915077 -89947550 - AluSx SINE Alu 0 316 1 289 256 59 35 chr9 27915380 27915524 -89947103 + MIR SINE MIR 54 196 -12 27 0 0 0 chr9 27915992 27916019 -89946608 + AT_rich Low_complexity Low_complexity 1 27 0 1098 157 0 0 chr9 27916100 27916272 -89946355 - FRAM SINE Alu -10 166 1 198 216 247 52 chr9 27916383 27916412 -89946215 - L2 LINE L2 -4 3268 3246 1977 188 121 13 chr9 27916412 27916874 -89945753 - MER67D LTR ERV1 0 514 3 198 216 247 52 chr9 27916874 27916941 -89945686 - L2 LINE L2 -26 3246 3153 21 0 0 0 chr9 27918196 27918217 -89944410 + AT_rich Low_complexity Low_complexity 1 21 0 182 250 14 0 chr9 27919210 27919282 -89943345 + (TA)n Simple_repeat Simple_repeat 2 74 0 708 282 52 28 chr9 27920734 27920986 -89941641 - MIR SINE MIR -1 261 2 277 410 56 0 chr9 27921615 27921810 -89940817 + L3b LINE CR1 1104 1309 -274 356 351 53 55 chr9 27921856 27922272 -89940355 - L2 LINE L2 -54 3218 2804 425 258 10 21 chr9 27923851 27923948 -89938679 - L2 LINE L2 -1 3271 3176 739 250 48 6 chr9 27923976 27924144 -89938483 + MER5B DNA MER1_type 1 175 -3 960 200 9 0 chr9 27926186 27926401 -89936226 + L1MA6 LINE L1 6084 6300 0 21 0 0 0 chr9 27926700 27926721 -89935906 + AT_rich Low_complexity Low_complexity 1 21 0 631 299 6 0 chr9 27927286 27927463 -89935164 + LTR33 LTR ERVL 1 178 -343 22 0 0 0 chr9 27928019 27928041 -89934586 + AT_rich Low_complexity Low_complexity 1 22 0 2276 106 6 3 chr9 27929080 27929391 -89933236 + AluSx SINE Alu 1 312 0 11825 195 47 18 chr9 27931804 27936814 -89925813 + L1PA16 LINE L1 1761 6858 -11 1701 181 74 47 chr9 27937172 27937659 -89924968 + MLT1D LTR MaLR 6 505 0 1281 272 88 24 chr9 27938013 27938591 -89924036 + MLT1L LTR MaLR 1 615 0 720 254 144 27 chr9 27940379 27940868 -89921759 - MLT1H LTR MaLR -15 540 1 208 338 26 84 chr9 27941433 27941587 -89921040 + MIR SINE MIR 48 192 -70 2437 72 26 0 chr9 27942185 27942490 -89920137 + AluSp SINE Alu 1 313 0 29 70 0 0 chr9 27942516 27942573 -89920054 + AT_rich Low_complexity Low_complexity 1 57 0 1427 233 34 34 chr9 27943215 27943601 -89919026 - MLT1B LTR MaLR -4 386 1 253 409 35 16 chr9 27943689 27943946 -89918681 - L2 LINE L2 -446 2868 2607 197 342 6 95 chr9 27943996 27944154 -89918473 - MIR SINE MIR -99 163 20 199 256 0 0 chr9 27944412 27944455 -89918172 + MIR SINE MIR 109 151 -111 304 352 0 16 chr9 27945428 27945610 -89917017 + (CCA)n Simple_repeat Simple_repeat 1 179 0 271 237 62 62 chr9 27946530 27946627 -89916000 + LTR33 LTR ERVL 1 97 -424 437 260 79 45 chr9 27947972 27948149 -89914478 + MER5A DNA MER1_type 6 188 -1 240 271 195 27 chr9 27948343 27948500 -89914127 - MIR SINE MIR -64 198 23 328 151 35 35 chr9 27948888 27948974 -89913653 - L1MC5 LINE L1 -47 7914 7829 534 277 83 37 chr9 27949792 27950034 -89912593 - MIR SINE MIR -5 257 5 388 320 107 15 chr9 27950043 27950240 -89912387 + L1MC4a LINE L1 5695 5909 -1899 21 36 0 0 chr9 27950315 27950343 -89912284 + AT_rich Low_complexity Low_complexity 1 28 0 287 304 146 92 chr9 27950489 27950566 -89912061 + L2 LINE L2 3020 3091 -181 7712 58 2 60 chr9 27950566 27951595 -89911032 - LTR5 LTR ERVK 0 969 1 287 304 146 92 chr9 27951595 27951757 -89910870 + L2 LINE L2 3091 3272 0 566 316 101 3 chr9 27951897 27952138 -89910489 + MIR SINE MIR 2 261 -1 192 77 0 0 chr9 27952453 27952479 -89910148 + (A)n Simple_repeat Simple_repeat 1 26 0 22 35 0 0 chr9 27952595 27952624 -89910003 + AT_rich Low_complexity Low_complexity 1 29 0 1523 134 24 0 chr9 27952674 27952921 -89909706 - L1PA16 LINE L1 0 6166 5914 356 314 127 18 chr9 27952923 27953365 -89909262 + L1ME4a LINE L1 5618 6121 0 23 33 0 0 chr9 27953365 27953395 -89909232 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr9 27953951 27953972 -89908655 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chr9 27953997 27954022 -89908605 + (TAAAAA)n Simple_repeat Simple_repeat 2 26 0 1696 183 52 48 chr9 27954288 27954748 -89907879 + MLT1C LTR MaLR 6 467 0 257 171 0 66 chr9 27954754 27954830 -89907797 + L1MC5 LINE L1 7754 7824 -137 284 230 50 29 chr9 27955021 27955160 -89907467 + HAL1b LINE L1 1204 1345 -3 2316 77 0 3 chr9 27955192 27955478 -89907149 + AluY SINE Alu 1 285 -26 337 279 54 36 chr9 27956327 27956370 -89906257 - L2 LINE L2 -2 3270 3229 2277 93 0 10 chr9 27956370 27956670 -89905957 + AluSc SINE Alu 10 306 -3 337 279 54 36 chr9 27956670 27956737 -89905890 - L2 LINE L2 -43 3229 3158 435 249 233 0 chr9 27957018 27957211 -89905416 - MIR SINE MIR -12 250 13 1001 199 197 9 chr9 27958981 27959497 -89903130 + LTR50 LTR ERVL 1 694 -101 571 217 178 11 chr9 27959600 27959780 -89902847 + MIR SINE MIR 47 256 -6 22 0 0 0 chr9 27960761 27960783 -89901844 + AT_rich Low_complexity Low_complexity 1 22 0 310 279 57 33 chr9 27961229 27961351 -89901276 - MIR SINE MIR -65 143 19 529 306 71 6 chr9 27961986 27962169 -89900458 - MIR SINE MIR -61 201 7 540 304 28 11 chr9 27962963 27963144 -89899483 - MIR SINE MIR -6 256 73 391 308 43 47 chr9 27963768 27963979 -89898648 - MLT1J2 LTR MaLR 0 450 241 249 143 54 36 chr9 27964043 27964099 -89898528 + MIR SINE MIR 148 204 -58 338 308 0 0 chr9 27964131 27964235 -89898392 - MIR SINE MIR -74 188 85 1334 250 40 42 chr9 27964241 27964532 -89898095 - MLT1D LTR MaLR -6 499 208 354 23 0 0 chr9 27964532 27964575 -89898052 + (TG)n Simple_repeat Simple_repeat 2 44 0 1334 250 40 42 chr9 27964575 27964779 -89897848 - MLT1D LTR MaLR -297 208 5 240 322 11 0 chr9 27964784 27964871 -89897756 - MIR SINE MIR -174 88 1 29285 111 18 59 chr9 27965031 27971440 -89891187 - L1PA7 LINE L1 -8 6146 16 13731 210 9 36 chr9 27971660 27972847 -89889780 + L1PA15 LINE L1 1679 2896 -3269 1770 160 4 7 chr9 27972847 27973146 -89889481 + AluJb SINE Alu 9 306 0 13731 210 9 36 chr9 27973146 27976084 -89886543 + L1PA15 LINE L1 2896 5689 -476 957 173 30 89 chr9 27976085 27976322 -89886305 + AluJb SINE Alu 81 303 -9 2846 160 6 8 chr9 27976322 27976809 -89885818 + L1PA15 LINE L1 5677 6162 -3 258 303 0 13 chr9 27977297 27977373 -89885254 + Zaphod DNA AcHobo 3954 4028 -3 282 338 86 0 chr9 27977922 27978061 -89884566 + MIR SINE MIR 106 256 -6 201 361 124 0 chr9 27980253 27980350 -89882277 + MIR SINE MIR 34 142 -66 1349 155 49 13 chr9 27980366 27980807 -89881820 - LTR54 LTR ERV1 -21 477 2 608 267 120 22 chr9 27980842 27981067 -89881560 - MIR SINE MIR -14 248 2 241 256 110 12 chr9 27981707 27981789 -89880838 - MIR SINE MIR -102 106 17 469 247 114 11 chr9 27982007 27982233 -89880394 - MIR SINE MIR -5 257 5 1637 127 43 56 chr9 27982402 27982515 -89880112 + MER44D DNA MER2_type 18 131 -2360 2124 124 0 17 chr9 27982515 27982813 -89879814 - AluSx SINE Alu -19 293 1 1637 127 43 56 chr9 27982813 27983023 -89879604 + MER44D DNA MER2_type 131 607 -2 2597 115 5 0 chr9 27983437 27983810 -89878817 + THE1C LTR MaLR 1 375 0 1908 217 82 27 chr9 27983926 27984451 -89878176 + MLT2B3 LTR ERVL 1 554 0 210 381 67 9 chr9 27984535 27984640 -89877987 - L2 LINE L2 -11 3302 3192 2615 162 12 14 chr9 27985515 27986002 -89876625 - L1MB2 LINE L1 -1 6170 5685 377 307 108 22 chr9 27986170 27986401 -89876226 - MIR SINE MIR 0 262 12 232 369 90 0 chr9 27986674 27986785 -89875842 + MIR3 SINE MIR 36 156 -52 204 322 0 0 chr9 27986840 27986899 -89875728 + MIR SINE MIR 85 143 -119 265 264 138 23 chr9 27987096 27987183 -89875444 - MER5A DNA MER1_type -2 187 91 2922 155 43 6 chr9 27987304 27987834 -89874793 + L1MB3 LINE L1 5625 6174 -9 2207 96 81 26 chr9 27988131 27988476 -89874151 + THE1B LTR MaLR 1 364 0 21 36 0 0 chr9 27988815 27988843 -89873784 + AT_rich Low_complexity Low_complexity 1 28 0 2016 152 39 51 chr9 27989098 27989430 -89873197 - MSTB1 LTR MaLR -4 428 101 2240 143 125 0 chr9 27989430 27989830 -89872797 + LTR47A LTR ERVL 1 450 -2 2016 152 39 51 chr9 27989830 27989930 -89872697 - MSTB1 LTR MaLR -331 101 1 688 233 84 5 chr9 27990956 27991002 -89871625 + MER58A DNA MER1_type 6 47 -2373 257 0 30 0 chr9 27991002 27991035 -89871592 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 688 233 84 5 chr9 27991035 27991190 -89871437 + MER58A DNA MER1_type 47 223 -1 933 208 52 119 chr9 27991448 27991833 -89870794 - MLT1A1 LTR MaLR -2 363 5 1220 254 92 30 chr9 27991913 27992084 -89870543 - LTR16B LTR ERVL 0 464 305 1695 184 43 0 chr9 27992084 27992246 -89870381 - AluJb SINE Alu -18 294 113 207 0 0 0 chr9 27992246 27992269 -89870358 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1695 184 43 0 chr9 27992269 27992388 -89870239 - AluJb SINE Alu -199 113 1 1220 254 92 30 chr9 27992388 27992653 -89869974 - LTR16B LTR ERVL -159 305 1 216 263 35 0 chr9 27992770 27992827 -89869800 - MIR3 SINE MIR -25 183 125 220 340 206 25 chr9 27993558 27993917 -89868710 - L2 LINE L2 -965 2349 1926 213 180 0 0 chr9 27995035 27995085 -89867542 + CT-rich Low_complexity Low_complexity 1 50 0 1520 207 98 15 chr9 27996083 27996493 -89866134 + MLT1D LTR MaLR 62 505 0 338 296 59 62 chr9 27996735 27996936 -89865691 - MIR SINE MIR -36 226 30 384 155 0 0 chr9 27997404 27997475 -89865152 + GA-rich Low_complexity Low_complexity 1 71 0 205 191 24 0 chr9 27998307 27998349 -89864278 + (ATG)n Simple_repeat Simple_repeat 2 44 0 697 255 6 12 chr9 27998399 27998560 -89864067 - MIR SINE MIR -73 189 30 187 193 313 12 chr9 27998601 27998684 -89863943 - MIR SINE MIR -76 186 79 215 344 0 0 chr9 27998937 27999001 -89863626 + L2 LINE L2 3136 3199 -73 2569 128 7 17 chr9 27999001 27999423 -89863204 + MSTA LTR MaLR 11 428 0 260 328 15 0 chr9 27999423 27999490 -89863137 + L2 LINE L2 3237 3304 -9 256 288 29 22 chr9 28000121 28000260 -89862367 + L1ME4a LINE L1 5308 5447 -2361 442 91 0 15 chr9 28000277 28000343 -89862284 + AluSc SINE Alu 233 297 -12 1084 219 48 4 chr9 28000344 28000613 -89862014 - L1ME1 LINE L1 -5 6161 5881 736 238 115 43 chr9 28000617 28001059 -89861568 + L1ME4a LINE L1 5446 5919 -202 228 206 0 0 chr9 28001129 28001192 -89861435 + L1ME4a LINE L1 6056 6118 -3 1581 152 80 4 chr9 28001219 28001495 -89861132 - AluJo SINE Alu -15 297 1 186 287 156 16 chr9 28001595 28001717 -89860910 - L2 LINE L2 -19 3294 3156 286 263 203 8 chr9 28001759 28001892 -89860735 + MIR SINE MIR 98 256 -6 183 94 62 0 chr9 28003232 28003264 -89859363 - L3 LINE CR1 -155 1422 1389 2156 106 0 52 chr9 28004113 28004442 -89858185 - AluSx SINE Alu 0 312 1 574 328 65 34 chr9 28005293 28005705 -89856922 - MLT1K LTR MaLR -25 563 139 240 240 20 0 chr9 28005680 28005730 -89856897 - MLT1K LTR MaLR -355 233 183 * 7546 106 26 18 chr9 28005783 28005873 -89856754 - HSMAR2 DNA Mariner -94 1208 1120 2211 135 0 19 chr9 28005873 28006191 -89856436 - AluSx SINE Alu 0 312 1 7546 106 26 18 chr9 28006191 28007298 -89855329 - HSMAR2 DNA Mariner -182 1120 1 1486 163 25 4 chr9 28007546 28007822 -89854805 + L1MB3 LINE L1 5892 6173 -10 474 309 108 10 chr9 28009049 28009253 -89853374 - MIR SINE MIR -7 255 32 299 231 253 0 chr9 28009589 28009680 -89852947 + MIR SINE MIR 44 157 -105 565 220 51 19 chr9 28009694 28009908 -89852719 - L1ME LINE L1 -680 5482 5262 2055 139 3 3 chr9 28009909 28010218 -89852409 + AluSg SINE Alu 1 309 -1 2624 216 6 40 chr9 28010232 28010932 -89851695 + L1ME1 LINE L1 5486 6161 -5 1604 190 28 21 chr9 28011117 28011406 -89851221 + AluJo SINE Alu 1 291 -21 270 169 34 17 chr9 28011505 28011564 -89851063 + LTR67 LTR ERVL 478 537 -20 396 307 109 50 chr9 28011696 28011880 -89850747 - MIR SINE MIR -5 257 54 1973 102 84 3 chr9 28011880 28012164 -89850463 + AluSg SINE Alu 1 307 -3 396 307 109 50 chr9 28012164 28012217 -89850410 - MIR SINE MIR -208 54 6 7402 37 0 3 chr9 28013136 28014448 -89848179 + L1PA5 LINE L1 4840 6148 -6 2391 180 11 17 chr9 28014497 28014959 -89847668 + MER44D DNA MER2_type 7 520 -85 6342 88 11 1 chr9 28014966 28016268 -89846359 + L1PA14 LINE L1 4833 6159 -2 2106 107 0 7 chr9 28016591 28016933 -89845694 - AluSc SINE Alu 0 340 1 393 298 153 37 chr9 28017156 28017508 -89845119 - L2 LINE L2 0 3313 2921 297 75 0 0 chr9 28018947 28018987 -89843640 + (CA)n Simple_repeat Simple_repeat 2 41 0 226 328 107 16 chr9 28019336 28019458 -89843169 + MIR3 SINE MIR 67 199 -9 2208 112 0 3 chr9 28019607 28019901 -89842726 - AluSg SINE Alu -17 293 1 2316 118 82 43 chr9 28021950 28022366 -89840261 + MSTB1 LTR MaLR 1 432 0 412 258 41 53 chr9 28022368 28022612 -89840015 + L1MC5 LINE L1 7336 7576 -385 232 300 82 29 chr9 28022701 28022944 -89839683 + L1MC5 LINE L1 7701 7956 -5 2378 104 0 9 chr9 28023050 28023366 -89839261 + AluSq SINE Alu 1 313 0 199 277 0 0 chr9 28023902 28023949 -89838678 + MIR SINE MIR 216 262 0 371 285 70 65 chr9 28024390 28024590 -89838037 - MIR3 SINE MIR -5 203 3 217 191 21 21 chr9 28024781 28024828 -89837799 - L2 LINE L2 -3 3310 3264 1921 161 43 0 chr9 28024938 28025237 -89837390 + AluJb SINE Alu 1 312 0 224 109 0 43 chr9 28026292 28026338 -89836289 + (TTTC)n Simple_repeat Simple_repeat 1 44 0 2248 84 7 23 chr9 28026544 28026852 -89835775 - AluSp SINE Alu -6 307 5 319 320 112 34 chr9 28027688 28027894 -89834733 - L1 LINE L1 -2238 3908 3687 2120 231 49 38 chr9 28028653 28029078 -89833549 + L1ME3 LINE L1 5455 5893 -269 5935 103 15 5 chr9 28029078 28029904 -89832723 + L1PA14 LINE L1 4339 5155 -1006 2105 104 34 10 chr9 28029904 28030201 -89832426 + AluSx SINE Alu 1 304 -8 5935 103 15 5 chr9 28030201 28031182 -89831445 + L1PA14 LINE L1 5155 6149 -12 2120 231 49 38 chr9 28031182 28031450 -89831177 + L1ME3 LINE L1 5893 6156 -6 2757 132 27 8 chr9 28031745 28032230 -89830397 - L1MA5 LINE L1 0 6300 5807 2165 80 31 0 chr9 28032432 28032718 -89829909 - AluY SINE Alu -5 306 12 185 284 75 0 chr9 28032721 28032788 -89829839 - MIR SINE MIR -114 148 77 234 0 0 0 chr9 28032947 28032973 -89829654 + (T)n Simple_repeat Simple_repeat 1 26 0 877 104 30 0 chr9 28034366 28034501 -89828126 - L1PA13 LINE L1 -5 6158 6020 1103 211 35 107 chr9 28034581 28034749 -89827878 + MLT1B LTR MaLR 6 185 -205 2313 99 7 0 chr9 28034749 28035042 -89827585 + AluSc SINE Alu 1 295 -14 1103 211 35 107 chr9 28035042 28035276 -89827351 + MLT1B LTR MaLR 185 379 -11 1168 153 0 0 chr9 28037604 28037781 -89824846 - AluSg/x SINE Alu -3 309 133 21 0 0 0 chr9 28038010 28038031 -89824596 + AT_rich Low_complexity Low_complexity 1 21 0 2116 219 59 49 chr9 28038106 28038767 -89823860 + L1ME2 LINE L1 5009 5701 -463 2157 96 11 4 chr9 28038767 28039075 -89823552 + AluSx SINE Alu 1 310 0 2116 219 59 49 chr9 28039075 28039479 -89823148 + L1ME2 LINE L1 5701 6100 -64 1771 177 7 3 chr9 28039483 28039783 -89822844 + AluJo SINE Alu 4 304 -8 225 235 45 45 chr9 28039863 28039995 -89822632 + L1MC4 LINE L1 7836 7967 -75 26 0 0 0 chr9 28040067 28040093 -89822534 + AT_rich Low_complexity Low_complexity 1 26 0 249 257 62 88 chr9 28040237 28040350 -89822277 + L2 LINE L2 3158 3267 -5 1353 161 107 76 chr9 28040372 28040663 -89821964 - AluJo SINE Alu -12 300 1 43 20 0 0 chr9 28040906 28040956 -89821671 + AT_rich Low_complexity Low_complexity 1 50 0 261 288 38 25 chr9 28040972 28041052 -89821575 - MER5B DNA MER1_type -8 170 90 223 347 0 27 chr9 28040986 28041061 -89821566 + MER5A DNA MER1_type 35 107 -82 * 399 266 227 30 chr9 28041634 28041837 -89820790 + MIR SINE MIR 20 262 0 2418 51 51 0 chr9 28041893 28042189 -89820438 + AluY SINE Alu 1 311 0 2051 155 79 25 chr9 28042821 28043227 -89819400 - MSTA LTR MaLR 0 428 1 25 31 0 0 chr9 28044291 28044323 -89818304 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr9 28044488 28044509 -89818118 + AT_rich Low_complexity Low_complexity 1 21 0 1245 279 116 26 chr9 28045101 28045645 -89816982 + MLT1E LTR MaLR 1 593 0 273 236 150 14 chr9 28046167 28046307 -89816320 - L1ME3A LINE L1 -3 6167 6009 1344 271 81 2 chr9 28046313 28046781 -89815846 - L1ME3A LINE L1 -278 5892 5388 207 103 0 26 chr9 28046867 28046906 -89815721 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 254 305 59 17 chr9 28046915 28047033 -89815594 + L1ME3A LINE L1 6026 6148 -22 4048 143 32 16 chr9 28047046 28048304 -89814323 + L1PA16 LINE L1 4698 5963 -203 2177 111 44 0 chr9 28048317 28048615 -89814012 + AluSx SINE Alu 2 312 0 1171 274 44 85 chr9 28048616 28049486 -89813141 + L1ME LINE L1 2 835 -5235 1734 197 0 7 chr9 28049496 28049780 -89812847 + AluJo SINE Alu 1 282 -30 326 128 60 0 chr9 28049819 28049936 -89812691 + (TA)n Simple_repeat Simple_repeat 1 124 0 536 257 60 32 chr9 28049973 28050222 -89812405 + L1ME LINE L1 837 1092 -4988 612 221 41 0 chr9 28050260 28050432 -89812195 + L1ME LINE L1 1198 1376 -4704 1415 225 75 44 chr9 28050455 28050873 -89811754 + L1MEc LINE L1 1007 1449 -5376 2363 91 0 0 chr9 28050873 28051169 -89811458 + AluSq SINE Alu 1 296 -17 1415 225 75 44 chr9 28051169 28051320 -89811307 + L1MEc LINE L1 1449 1594 -5231 225 161 48 24 chr9 28051354 28051478 -89811149 + (TA)n Simple_repeat Simple_repeat 1 127 0 344 232 77 23 chr9 28051509 28051658 -89810969 + L1MEc LINE L1 1517 1766 -4878 2839 180 76 5 chr9 28051792 28052447 -89810180 + L1MB7 LINE L1 5472 6173 -11 273 209 57 38 chr9 28052556 28052661 -89809966 + L1MEc LINE L1 2646 2752 -3892 1437 119 13 0 chr9 28052661 28052896 -89809731 - Tigger5 DNA MER2_type 0 2323 2086 231 211 70 0 chr9 28052918 28052975 -89809652 - Tigger5 DNA MER2_type -2261 62 2 305 222 42 0 chr9 28052975 28053047 -89809580 + L1MEc LINE L1 2748 2822 -3822 1318 221 38 0 chr9 28053096 28053359 -89809268 + AluSx SINE Alu 1 273 -39 184 29 29 29 chr9 28053368 28053402 -89809225 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 1782 143 4 4 chr9 28053402 28053675 -89808952 + AluSq SINE Alu 1 273 -40 568 238 54 0 chr9 28053675 28053822 -89808805 + MLT1E1 LTR MaLR 491 645 -9 1091 186 21 86 chr9 28053831 28053956 -89808671 + L1MEc LINE L1 3055 3187 -3457 2458 70 0 0 chr9 28053956 28054256 -89808371 - AluY SINE Alu -11 300 1 1091 186 21 86 chr9 28054256 28054472 -89808155 + L1MEc LINE L1 3187 3372 -3272 2334 71 0 0 chr9 28054472 28054916 -89807711 + AluY SINE Alu 1 444 0 1091 186 21 86 chr9 28054916 28054958 -89807669 + L1MEc LINE L1 3372 3415 -3229 2106 132 0 0 chr9 28055252 28055547 -89807080 - AluSx SINE Alu -17 295 1 2555 52 0 3 chr9 28055926 28056231 -89806396 - AluY SINE Alu -7 304 1 1012 152 0 0 chr9 28057214 28057365 -89805262 - AluJb SINE Alu -15 297 147 2243 121 0 3 chr9 28057801 28058115 -89804512 + AluSp SINE Alu 1 313 0 1866 72 0 4 chr9 28058403 28058638 -89803989 - AluY SINE Alu -77 234 1 1471 163 83 18 chr9 28058697 28058915 -89803712 + AluJo SINE Alu 1 242 -70 2254 199 118 73 chr9 28058915 28059706 -89802921 - LTR1B LTR ERV1 0 826 1 1471 163 83 18 chr9 28059706 28059763 -89802864 + AluJo SINE Alu 242 294 -18 21 36 0 0 chr9 28059956 28059984 -89802643 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr9 28060188 28060210 -89802417 + AT_rich Low_complexity Low_complexity 1 22 0 1833 123 9 56 chr9 28060493 28060552 -89802075 - MER47A DNA MER2_type -1984 339 279 2424 78 0 19 chr9 28060552 28060861 -89801766 - AluSq SINE Alu -10 303 1 1833 123 9 56 chr9 28060861 28061143 -89801484 - MER47A DNA MER2_type -2044 279 14 26 0 0 0 chr9 28061178 28061204 -89801423 + AT_rich Low_complexity Low_complexity 1 26 0 19440 83 1 6 chr9 28061432 28064173 -89798454 + HERV9 LTR ERV1 2217 4944 -3455 2060 176 116 66 chr9 28064174 28065013 -89797614 + HERV9 LTR ERV1 840 1720 -5176 * 3215 79 3 16 chr9 28065007 28065592 -89797035 + HERV9 LTR ERV1 7756 8399 0 5530 77 98 1 chr9 28065592 28066345 -89796282 + LTR12 LTR ERV1 1 826 0 369 349 64 43 chr9 28066824 28067151 -89795476 + HAL1b LINE L1 18 351 -997 315 288 107 23 chr9 28067351 28067528 -89795099 + HAL1 LINE L1 6 197 -2310 2516 179 95 81 chr9 28067569 28068250 -89794377 - LTR8 LTR ERV1 0 691 1 293 253 20 20 chr9 28068394 28068493 -89794134 + HAL1 LINE L1 468 566 -1941 485 222 105 77 chr9 28068535 28068620 -89794007 + HAL1 LINE L1 760 841 -1666 1761 167 3 16 chr9 28068620 28068932 -89793695 + AluJb SINE Alu 1 308 -4 485 222 105 77 chr9 28068932 28069094 -89793533 + HAL1 LINE L1 841 1014 -1493 1318 238 38 108 chr9 28069097 28069699 -89792928 - REP3 LTR ERV -2 560 1 509 230 97 50 chr9 28069714 28070014 -89792613 + HAL1 LINE L1 1026 1339 -1168 377 260 65 8 chr9 28070123 28070246 -89792381 + HAL1 LINE L1 1363 1492 -1015 * 1109 15 0 0 chr9 28070241 28070371 -89792256 + L1P LINE L1 2791 2920 -3226 3791 60 12 6 chr9 28070472 28070984 -89791643 + L1PA5 LINE L1 4814 5329 -812 3572 39 0 2 chr9 28070984 28071418 -89791209 + L1PA5 LINE L1 5721 6154 0 1350 233 142 87 chr9 28071419 28072259 -89790368 + HAL1 LINE L1 1485 2370 -137 242 292 292 14 chr9 28072520 28072664 -89789963 - MIR3 SINE MIR -6 202 19 786 156 0 15 chr9 28073340 28073475 -89789152 + FLAM_A SINE Alu 1 133 0 2195 75 14 14 chr9 28073706 28074000 -89788627 - AluY SINE Alu -17 294 1 823 10 0 20 chr9 28077133 28077233 -89785394 - L1PA3 LINE L1 -2 6153 6056 2328 98 3 0 chr9 28077882 28078179 -89784448 + AluSp SINE Alu 1 298 -15 21 36 0 0 chr9 28078288 28078316 -89784311 + AT_rich Low_complexity Low_complexity 1 28 0 396 201 58 71 chr9 28078403 28078557 -89784070 - L1MC5 LINE L1 -608 7353 7202 237 244 70 0 chr9 28078607 28078693 -89783934 - HAL1 LINE L1 -1028 1479 1388 665 215 226 26 chr9 28078809 28079074 -89783553 + L2 LINE L2 2988 3305 -8 579 301 90 47 chr9 28079076 28079215 -89783412 - HAL1 LINE L1 -1276 1231 1100 2100 98 0 0 chr9 28079215 28079480 -89783147 - AluSg SINE Alu -45 265 1 579 301 90 47 chr9 28079480 28079705 -89782922 - HAL1 LINE L1 -1407 1100 851 2383 91 0 0 chr9 28079943 28080252 -89782375 + AluSg1 SINE Alu 1 309 0 2391 90 3 0 chr9 28080492 28080793 -89781834 - AluSp SINE Alu -11 302 1 21 71 0 0 chr9 28080837 28080879 -89781748 + AT_rich Low_complexity Low_complexity 1 42 0 2704 39 0 0 chr9 28081009 28081320 -89781307 - AluY SINE Alu 0 311 1 280 233 8 54 chr9 28081325 28081454 -89781173 - L1MC/D LINE L1 -2603 5439 5317 329 267 0 0 chr9 28081689 28081764 -89780863 - HAL1 LINE L1 -2422 85 11 2219 88 3 10 chr9 28082039 28082336 -89780291 + AluY SINE Alu 1 295 -16 2327 75 7 0 chr9 28083648 28083942 -89778685 - AluY SINE Alu -15 296 1 35 41 0 0 chr9 28085827 28085876 -89776751 + AT_rich Low_complexity Low_complexity 1 49 0 515 220 0 8 chr9 28085876 28085994 -89776633 - AluJb SINE Alu -22 290 174 2145 103 3 3 chr9 28086133 28086424 -89776203 + AluSx SINE Alu 14 304 -8 249 328 138 9 chr9 28086656 28086772 -89775855 + L3 LINE CR1 199 329 -1248 624 229 170 31 chr9 28086784 28087142 -89775485 - L2 LINE L2 -280 3033 2632 457 225 183 100 chr9 28087146 28087597 -89775030 - L2 LINE L2 -831 2483 1920 422 311 139 0 chr9 28087600 28087780 -89774847 - L2 LINE L2 -1648 1666 1462 416 297 34 14 chr9 28087906 28088054 -89774573 + L3 LINE CR1 1250 1400 -177 1057 222 29 25 chr9 28088123 28088366 -89774261 - MIR SINE MIR -18 244 1 4187 153 101 7 chr9 28088550 28089460 -89773167 + L1MC2 LINE L1 5188 6181 -163 532 93 23 12 chr9 28089474 28089560 -89773067 + L1MC2 LINE L1 6248 6334 -10 428 215 16 58 chr9 28089948 28090069 -89772558 - AluJb SINE Alu -68 244 129 479 322 159 21 chr9 28090479 28090768 -89771859 - L3 LINE CR1 -7 1570 1242 2020 142 30 0 chr9 28091317 28091620 -89771007 + AluSx SINE Alu 1 312 0 2455 78 0 3 chr9 28092508 28092816 -89769811 + AluY SINE Alu 1 307 -4 1188 102 12 0 chr9 28092816 28092983 -89769644 + AluY SINE Alu 133 301 -10 23 0 0 0 chr9 28093610 28093633 -89768994 + AT_rich Low_complexity Low_complexity 1 23 0 2240 75 4 0 chr9 28094477 28094778 -89767849 + AluY SINE Alu 1 302 0 1179 268 93 34 chr9 28096409 28097033 -89765594 + L1MC4 LINE L1 7377 8037 -5 198 0 0 0 chr9 28097738 28097760 -89764867 + (A)n Simple_repeat Simple_repeat 1 22 0 1294 189 125 11 chr9 28097765 28098029 -89764598 - AluJb SINE Alu -18 294 1 2203 98 7 3 chr9 28098899 28099195 -89763432 + AluSp SINE Alu 1 297 -16 537 194 86 29 chr9 28099329 28099468 -89763159 - MIR SINE MIR -10 252 106 2187 127 0 0 chr9 28099498 28099797 -89762830 - AluSx SINE Alu -7 305 7 290 191 88 0 chr9 28099972 28100040 -89762587 + L1MC4a LINE L1 5885 5958 -1850 1106 230 101 83 chr9 28100389 28100555 -89762072 - MLT1D LTR MaLR 0 505 343 1925 153 52 18 chr9 28100555 28100881 -89761746 + MER1B DNA MER1_type 1 337 0 1106 230 101 83 chr9 28100881 28101210 -89761417 - MLT1D LTR MaLR -162 343 1 1013 189 111 45 chr9 28101259 28101592 -89761035 + Charlie4a DNA MER1_type 148 502 -6 2296 187 47 18 chr9 28101792 28102283 -89760344 + MLT1D LTR MaLR 1 505 0 462 238 54 82 chr9 28102304 28102657 -89759970 + L1MC5 LINE L1 7339 7681 -280 25 31 0 0 chr9 28102669 28102701 -89759926 + AT_rich Low_complexity Low_complexity 1 32 0 344 208 40 32 chr9 28102730 28102855 -89759772 + L1MC5 LINE L1 7806 7931 -30 180 0 0 0 chr9 28103696 28103716 -89758911 + (T)n Simple_repeat Simple_repeat 1 20 0 213 154 0 0 chr9 28104198 28104237 -89758390 + (CA)n Simple_repeat Simple_repeat 2 40 0 216 0 0 0 chr9 28104244 28104268 -89758359 + (TG)n Simple_repeat Simple_repeat 2 25 0 2038 128 0 10 chr9 28104277 28104573 -89758054 - AluSx SINE Alu -19 293 1 2004 141 3 0 chr9 28104954 28105251 -89757376 + AluSx SINE Alu 3 300 -12 1933 121 36 0 chr9 28105300 28105610 -89757017 + AluSx SINE Alu 3 312 0 221 57 29 0 chr9 28106196 28106231 -89756396 + (TA)n Simple_repeat Simple_repeat 2 37 0 747 211 0 0 chr9 28106233 28106375 -89756252 - FRAM SINE Alu -31 145 4 1357 186 74 0 chr9 28106640 28106909 -89755718 + AluJb SINE Alu 5 293 -19 2492 78 0 0 chr9 28107585 28107891 -89754736 + AluY SINE Alu 3 308 -3 1727 162 17 17 chr9 28107891 28108250 -89754377 - L1MA4 LINE L1 -3 6297 5939 1764 142 0 4 chr9 28108794 28109047 -89753580 + AluSx SINE Alu 35 286 -26 281 91 0 0 chr9 28109048 28109092 -89753535 + Alu SINE Alu 257 300 -2 764 132 9 0 chr9 28109494 28109608 -89753019 + Tigger3(Golem) DNA MER2_type 2808 2922 -107 1803 117 51 48 chr9 28109615 28109757 -89752870 + MER46B DNA MER2_type 10 30 -2701 1689 161 39 0 chr9 28109757 28110036 -89752591 + AluJo SINE Alu 1 290 -22 1803 117 51 48 chr9 28110036 28110244 -89752383 + MER46B DNA MER2_type 30 236 0 526 224 37 0 chr9 28110244 28110348 -89752279 + Tigger3(Golem) DNA MER2_type 2921 3028 -1 29 0 0 0 chr9 28110769 28110798 -89751829 + AT_rich Low_complexity Low_complexity 1 29 0 767 225 6 0 chr9 28111553 28111713 -89750914 + AluJb SINE Alu 134 294 -18 1985 218 62 46 chr9 28112373 28112918 -89749709 + MLT2B3 LTR ERVL 1 554 0 1945 160 13 0 chr9 28113562 28113862 -89748765 - AluSx SINE Alu -8 304 1 421 228 0 0 chr9 28113949 28114028 -89748599 + AluJo/FLAM SINE Alu 37 115 -197 * 768 190 22 0 chr9 28114021 28114158 -89748469 - AluJo SINE Alu -170 142 3 1957 150 45 31 chr9 28114213 28114572 -89748055 + THE1B LTR MaLR 1 364 0 10685 92 54 10 chr9 28114572 28116085 -89746542 + THE1B-int LTR MaLR 1 1580 0 1029 137 52 10 chr9 28116085 28116395 -89746232 + THE1B LTR MaLR 1 364 0 2273 73 3 7 chr9 28117961 28118261 -89744366 - AluSg SINE Alu -11 299 1 203 286 0 14 chr9 28118283 28118353 -89744274 + (TA)n Simple_repeat Simple_repeat 2 70 0 22 35 0 0 chr9 28119485 28119514 -89743113 + AT_rich Low_complexity Low_complexity 1 29 0 2270 94 7 0 chr9 28119820 28120117 -89742510 + AluSg SINE Alu 2 300 -10 499 359 65 8 chr9 28120902 28121150 -89741477 + L2 LINE L2 2511 2772 -542 213 292 62 0 chr9 28121340 28121405 -89741222 + L2 LINE L2 3006 3074 -198 1647 151 185 116 chr9 28121509 28122021 -89740606 + L1MB8 LINE L1 5508 6072 -106 2289 88 3 3 chr9 28122021 28122329 -89740298 + AluSq SINE Alu 1 308 -5 1647 151 185 116 chr9 28122329 28122438 -89740189 + L1MB8 LINE L1 6072 6172 -6 2221 85 0 44 chr9 28122458 28122775 -89739852 + AluY SINE Alu 1 303 -8 2155 130 0 3 chr9 28122973 28123280 -89739347 + AluSx SINE Alu 1 306 -6 577 296 190 25 chr9 28123305 28123549 -89739078 + L1MC/D LINE L1 3424 3626 -2520 2517 53 0 0 chr9 28123549 28123852 -89738775 + AluY SINE Alu 1 303 -8 577 296 190 25 chr9 28123852 28124050 -89738577 + L1MC/D LINE L1 3626 3939 -2207 365 263 82 63 chr9 28124073 28124389 -89738238 + L1MC/D LINE L1 5315 5636 -2172 434 301 56 7 chr9 28124789 28124938 -89737689 + MIR SINE MIR 2 154 -60 24 0 0 0 chr9 28125055 28125079 -89737548 + AT_rich Low_complexity Low_complexity 1 24 0 319 323 101 45 chr9 28125183 28125561 -89737066 + L1M2 LINE L1 345 743 -6106 2483 74 3 0 chr9 28126709 28127019 -89735608 - AluSp SINE Alu -2 311 1 1276 241 29 21 chr9 28127102 28127198 -89735429 + LTR26 LTR ERV1 181 275 -328 3677 139 81 0 chr9 28127198 28127794 -89734833 + LTR9B LTR ERV1 1 644 0 1276 241 29 21 chr9 28127794 28128117 -89734510 + LTR26 LTR ERV1 275 603 0 815 112 77 7 chr9 28128120 28128263 -89734364 + MLT1B LTR MaLR 22 174 -216 2356 68 14 14 chr9 28128267 28128563 -89734064 + AluY SINE Alu 1 296 -15 1218 205 9 0 chr9 28128563 28128787 -89733840 + 7SLRNA srpRNA srpRNA 1 226 -94 764 101 0 2 chr9 28128788 28129036 -89733591 + AluSx SINE Alu 1 296 -13 516 202 0 0 chr9 28129036 28129130 -89733497 + 7SLRNA srpRNA srpRNA 217 310 -10 1162 152 25 0 chr9 28129151 28129349 -89733278 + MLT1B LTR MaLR 188 390 0 314 248 29 19 chr9 28129594 28129699 -89732928 - L2 LINE L2 -44 3269 3164 319 238 169 44 chr9 28129737 28129842 -89732785 + L2 LINE L2 3096 3229 -84 2308 108 3 0 chr9 28129842 28130149 -89732478 - AluSg SINE Alu -2 308 1 319 238 169 44 chr9 28130149 28130203 -89732424 + L2 LINE L2 3229 3275 -38 1438 155 52 48 chr9 28130203 28130474 -89732153 + AluJb SINE Alu 1 272 -40 258 146 18 18 chr9 28130739 28130794 -89731833 - MER116 DNA Mariner 0 80 26 237 167 0 0 chr9 28130823 28130865 -89731762 - MER116 DNA Mariner -38 42 1 1819 109 91 0 chr9 28131331 28131606 -89731021 - AluSx SINE Alu -8 304 5 246 111 67 0 chr9 28131615 28131660 -89730967 + MLT1K LTR MaLR 541 588 0 227 200 0 22 chr9 28131661 28131706 -89730921 + (CATAG)n Simple_repeat Simple_repeat 1 44 0 253 330 127 0 chr9 28131941 28132059 -89730568 + L2 LINE L2 3172 3304 -9 392 255 87 19 chr9 28132112 28132273 -89730354 + MLT1H LTR MaLR 1 172 -377 355 277 207 28 chr9 28132991 28133204 -89729423 - MIR SINE MIR -10 252 2 226 211 28 14 chr9 28133408 28133479 -89729148 - L1 LINE L1 -1197 4949 4878 1635 214 180 20 chr9 28134015 28134525 -89728102 + MLT1E LTR MaLR 1 592 -1 265 252 171 37 chr9 28134725 28134971 -89727656 + L1MC4 LINE L1 7689 7967 -75 1900 166 3 19 chr9 28134999 28135313 -89727314 - AluJo SINE Alu -3 309 1 23 54 0 0 chr9 28135313 28135350 -89727277 + AT_rich Low_complexity Low_complexity 1 37 0 1477 40 0 0 chr9 28135581 28135757 -89726870 + AluY SINE Alu 123 298 -13 227 254 0 0 chr9 28136394 28136449 -89726178 + L1ME4a LINE L1 5990 6044 -77 181 227 0 106 chr9 28136808 28136874 -89725753 + MIR SINE MIR 21 79 -129 55 40 0 0 chr9 28137875 28137951 -89724676 + AT_rich Low_complexity Low_complexity 1 76 0 3143 35 0 0 chr9 28138961 28139355 -89723272 - L1P LINE L1 -1255 4891 4498 322 267 55 36 chr9 28139697 28139862 -89722765 + L1ME LINE L1 5673 5840 -281 23 33 0 0 chr9 28140283 28140313 -89722314 + AT_rich Low_complexity Low_complexity 1 30 0 200 194 0 0 chr9 28140317 28140353 -89722274 - MIR SINE MIR -8 254 219 2931 159 36 82 chr9 28140381 28141110 -89721517 - L1PB4 LINE L1 -7 6149 5455 2365 108 7 0 chr9 28141431 28141738 -89720889 - AluSq SINE Alu -4 309 1 368 258 129 83 chr9 28141799 28142148 -89720479 + L1MC5 LINE L1 7263 7634 -408 2246 62 36 36 chr9 28142271 28142579 -89720048 + AluY SINE Alu 3 310 -1 2252 105 3 0 chr9 28143172 28143476 -89719151 - AluY SINE Alu -6 305 1 1972 112 3 37 chr9 28143488 28143784 -89718843 - AluSx SINE Alu -26 286 1 23 0 0 0 chr9 28143993 28144016 -89718611 + AT_rich Low_complexity Low_complexity 1 23 0 2364 90 0 10 chr9 28144624 28144934 -89717693 - AluSx SINE Alu -5 307 1 29 47 0 0 chr9 28145598 28145641 -89716986 + AT_rich Low_complexity Low_complexity 1 43 0 743 168 168 7 chr9 28145687 28145836 -89716791 - AluJb SINE Alu -6 306 134 22 35 0 0 chr9 28145837 28145866 -89716761 + AT_rich Low_complexity Low_complexity 1 29 0 598 99 0 0 chr9 28146064 28146155 -89716472 - L1PA10 LINE L1 0 6168 6078 2295 106 0 0 chr9 28146169 28146461 -89716166 - AluSg SINE Alu -18 292 1 964 97 8 15 chr9 28146461 28146595 -89716032 - AluSq/x SINE Alu -177 136 4 355 305 122 18 chr9 28147275 28147562 -89715065 - L2 LINE L2 -357 2956 2577 555 282 47 41 chr9 28147718 28147888 -89714739 - MIR SINE MIR -89 173 3 670 204 0 15 chr9 28147955 28148087 -89714540 + FLAM_A SINE Alu 4 133 0 532 247 37 56 chr9 28148558 28148720 -89713907 + MER5B DNA MER1_type 1 159 -19 264 143 20 20 chr9 28149092 28149141 -89713486 + MIR SINE MIR 193 241 -21 206 233 14 27 chr9 28149567 28149640 -89712987 + A-rich Low_complexity Low_complexity 3 74 0 193 277 270 20 chr9 28149643 28149791 -89712836 - MIR SINE MIR -13 249 65 340 253 13 97 chr9 28149881 28149942 -89712685 + MER5B DNA MER1_type 1 66 -112 2252 105 3 0 chr9 28149942 28150237 -89712390 + AluSp SINE Alu 2 297 -16 340 253 13 97 chr9 28150237 28150329 -89712298 + MER5B DNA MER1_type 66 141 -37 286 315 0 45 chr9 28150321 28150432 -89712195 + MER5A DNA MER1_type 82 187 -2 * 209 327 45 9 chr9 28150543 28150653 -89711974 - MIR SINE MIR 0 262 149 590 275 19 6 chr9 28151698 28151858 -89710769 - MIR SINE MIR -99 163 2 981 289 45 48 chr9 28152876 28153485 -89709142 + L2 LINE L2 2395 3049 -264 354 230 18 62 chr9 28153562 28153675 -89708952 + MLT1J2 LTR MaLR 64 171 -279 3489 208 93 37 chr9 28153704 28154764 -89707863 - Charlie1a DNA MER1_type -335 1120 1 1160 155 6 0 chr9 28154887 28155061 -89707566 - AluJb SINE Alu -15 297 123 1794 175 0 13 chr9 28156342 28156651 -89705976 - AluJo SINE Alu -7 305 1 31 44 0 0 chr9 28159093 28159138 -89703489 + AT_rich Low_complexity Low_complexity 1 45 0 2035 149 0 7 chr9 28159330 28159639 -89702988 - AluSx SINE Alu -5 307 1 460 283 92 3 chr9 28160772 28160941 -89701686 + MIR SINE MIR 8 189 -19 1811 174 0 13 chr9 28161133 28161443 -89701184 + AluJo SINE Alu 2 307 -5 1101 204 155 15 chr9 28161446 28161710 -89700917 + AluJb SINE Alu 2 302 0 321 256 12 12 chr9 28162096 28162182 -89700445 + MLT1I LTR MaLR 36 121 -288 2347 64 7 3 chr9 28162323 28162619 -89700008 - AluY SINE Alu -14 297 1 225 322 35 23 chr9 28162689 28162776 -89699851 + MLT1I LTR MaLR 243 330 -79 2102 136 0 3 chr9 28162798 28163099 -89699528 - AluSq SINE Alu -13 300 1 610 250 65 35 chr9 28163169 28163369 -89699258 + L1MC4a LINE L1 6704 6909 -899 613 225 48 43 chr9 28163394 28163625 -89699002 + L1MC5 LINE L1 6997 7228 -733 512 227 131 48 chr9 28163649 28163971 -89698656 + L1MC5 LINE L1 7226 7512 -449 674 130 0 0 chr9 28163976 28164076 -89698551 + AluS SINE Alu 1 100 -213 1655 97 4 13 chr9 28164076 28164338 -89698289 + AluSq SINE Alu 58 317 0 258 198 206 93 chr9 28164345 28164430 -89698197 + L1MC5 LINE L1 7546 7620 -341 216 0 0 0 chr9 28164430 28164454 -89698173 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 258 198 206 93 chr9 28164454 28164513 -89698114 + L1MC5 LINE L1 7620 7671 -290 1425 190 75 16 chr9 28164513 28164834 -89697793 + MER58B DNA MER1_type 2 341 0 258 198 206 93 chr9 28164834 28164935 -89697692 + L1MC5 LINE L1 7671 7820 -141 1867 105 6 71 chr9 28165069 28165203 -89697424 + AluSx SINE Alu 1 142 -170 2279 106 0 0 chr9 28165203 28165504 -89697123 + AluSc SINE Alu 1 301 -8 1867 105 6 71 chr9 28165504 28165694 -89696933 + AluSx SINE Alu 142 304 -8 25 0 0 0 chr9 28165694 28165719 -89696908 + AT_rich Low_complexity Low_complexity 1 25 0 2462 72 0 3 chr9 28165722 28166029 -89696598 + AluY SINE Alu 1 306 -5 1882 180 0 0 chr9 28166029 28166323 -89696304 - AluJo SINE Alu -17 295 2 2037 122 10 3 chr9 28166691 28166994 -89695633 - AluSx SINE Alu -7 305 1 747 110 63 0 chr9 28167905 28168032 -89694595 + MER30 DNA MER1_type 1 135 -95 35 24 0 0 chr9 28168062 28168104 -89694523 + AT_rich Low_complexity Low_complexity 1 42 0 439 250 146 39 chr9 28168342 28168602 -89694025 + HAL1 LINE L1 1 288 -2219 * 8082 143 23 21 chr9 28168601 28169074 -89693553 + L1MB3 LINE L1 18 489 -5895 2237 110 0 3 chr9 28169074 28169375 -89693252 + AluSq SINE Alu 1 300 -13 8082 143 23 21 chr9 28169375 28170443 -89692184 + L1MB3 LINE L1 489 1561 -4823 585 266 0 0 chr9 28170443 28170567 -89692060 + FAM SINE Alu 2 125 -60 1075 204 13 35 chr9 28170567 28170793 -89691834 + AluJo SINE Alu 85 305 -7 3313 164 85 32 chr9 28170796 28171322 -89691305 + L1MB3 LINE L1 1686 2183 -4199 2409 71 0 0 chr9 28171322 28171656 -89690971 + AluY SINE Alu 1 334 0 3313 164 85 32 chr9 28171656 28172275 -89690352 + L1MB3 LINE L1 2183 2900 -3482 3221 155 31 3 chr9 28172287 28172894 -89689733 + L1MB3 LINE L1 5795 6418 -1 189 74 0 0 chr9 28173367 28173394 -89689233 + (CAAAAA)n Simple_repeat Simple_repeat 3 29 0 242 284 137 0 chr9 28173431 28173526 -89689101 + HAL1 LINE L1 404 511 -1996 847 234 254 29 chr9 28173625 28174141 -89688486 + HAL1 LINE L1 720 1351 -1156 700 306 94 25 chr9 28174257 28174702 -89687925 + HAL1 LINE L1 1620 2095 -412 2355 54 13 0 chr9 28174741 28175039 -89687588 + AluY SINE Alu 1 302 -9 256 192 115 0 chr9 28175064 28175142 -89687485 + HAL1 LINE L1 2219 2305 -202 1833 166 0 23 chr9 28175805 28176106 -89686521 + AluJo SINE Alu 1 294 -18 1955 173 59 11 chr9 28176123 28176498 -89686129 + MSTD LTR MaLR 4 396 0 1085 121 136 29 chr9 28176631 28176837 -89685790 + MER30 DNA MER1_type 3 230 0 2327 82 10 0 chr9 28176988 28177280 -89685347 + AluSp SINE Alu 1 295 -18 309 247 118 21 chr9 28177581 28177674 -89684953 - L3 LINE CR1 -6 1571 1470 * 444 341 40 0 chr9 28177654 28177830 -89684797 + L2 LINE L2 2578 2760 -554 225 235 190 114 chr9 28177899 28178188 -89684439 + L2 LINE L2 2943 3253 -60 249 250 313 21 chr9 28178719 28178863 -89683764 - MIR3 SINE MIR -9 199 14 249 192 39 0 chr9 28179990 28180042 -89682585 - MER5A DNA MER1_type -80 109 56 2331 79 16 0 chr9 28180599 28180903 -89681724 - AluSc SINE Alu 0 309 1 364 188 43 0 chr9 28181377 28181446 -89681181 - MIR SINE MIR -70 192 121 768 129 282 38 chr9 28181449 28181658 -89680969 + MER93b LTR ERV1 1 260 -113 994 194 114 38 chr9 28181720 28182148 -89680479 - LTR8A LTR ERV1 -24 627 143 2489 75 0 3 chr9 28182171 28182477 -89680150 + AluSc SINE Alu 1 305 -4 258 185 15 15 chr9 28182628 28182693 -89679934 - MER87 LTR ERV1 -395 146 82 342 179 64 13 chr9 28182734 28182812 -89679815 - LTR8 LTR ERV1 -607 84 3 508 168 75 0 chr9 28182816 28182923 -89679704 + MER93a LTR ERV1 288 402 0 181 379 0 0 chr9 28182985 28183043 -89679584 - MIR SINE MIR -100 108 51 1877 135 14 3 chr9 28183757 28184045 -89678582 + AluSx SINE Alu 1 291 -21 2364 84 3 13 chr9 28184409 28184717 -89677910 - AluSq SINE Alu -8 305 1 287 220 37 46 chr9 28184937 28185046 -89677581 - MER34 LTR ERV1 0 542 435 407 227 105 63 chr9 28185408 28185646 -89676981 - L1MC4a LINE L1 -1962 5846 5599 826 146 7 29 chr9 28185813 28185950 -89676677 - AluJo SINE Alu -178 134 1 823 198 77 0 chr9 28186103 28186285 -89676342 + MER67A LTR ERV1 348 543 0 1568 167 64 4 chr9 28186330 28186673 -89675954 + MER93a LTR ERV1 1 402 0 440 317 22 27 chr9 28186715 28186898 -89675729 - L2 LINE L2 -180 3092 2911 195 256 0 0 chr9 28187144 28187187 -89675440 + MIR SINE MIR 72 114 -148 536 204 15 15 chr9 28187231 28187363 -89675264 - LTR67 LTR ERVL -2 555 424 24 0 0 0 chr9 28187971 28187995 -89674632 + AT_rich Low_complexity Low_complexity 1 24 0 351 293 103 35 chr9 28189085 28189259 -89673368 - MIR SINE MIR -54 208 23 289 323 174 0 chr9 28189684 28189845 -89672782 - L2 LINE L2 -990 2324 2136 1724 51 174 16 chr9 28189940 28190193 -89672434 - AluY SINE Alu -8 293 1 2404 55 0 3 chr9 28191224 28191549 -89671078 - AluY SINE Alu 0 311 1 456 352 87 7 chr9 28192191 28192478 -89670149 + L2 LINE L2 1876 2185 -1129 559 262 52 56 chr9 28192483 28192735 -89669892 + MER112 DNA MER1_type 9 259 -1 522 357 101 47 chr9 28192813 28193224 -89669403 - L2 LINE L2 -2379 935 469 2174 98 0 23 chr9 28193224 28193530 -89669097 - AluY SINE Alu -12 299 1 522 357 101 47 chr9 28193530 28193824 -89668803 - L2 LINE L2 -2845 469 192 451 209 73 36 chr9 28194254 28194364 -89668263 + FRAM SINE Alu 38 151 -25 313 336 102 33 chr9 28194612 28195064 -89667563 + L1M4 LINE L1 4802 5284 -862 228 67 0 0 chr9 28195067 28195097 -89667530 + (T)n Simple_repeat Simple_repeat 1 30 0 7590 28 4 16 chr9 28195098 28196094 -89666533 - L1PA2 LINE L1 0 6155 5163 221 237 50 36 chr9 28196094 28196233 -89666394 + A-rich Low_complexity Low_complexity 5 145 0 248 228 0 22 chr9 28196246 28196338 -89666289 - L1PA2 LINE L1 -1130 5016 4927 9744 187 52 22 chr9 28196668 28198448 -89664179 - L1 LINE L1 -802 6046 4171 2340 99 0 0 chr9 28198448 28198742 -89663885 - AluSg SINE Alu -16 294 1 9744 187 52 22 chr9 28198742 28199450 -89663177 - L1 LINE L1 -2677 4171 3485 1476 229 40 69 chr9 28199445 28200359 -89662268 - L1 LINE L1 -3687 3161 2273 * 367 295 53 70 chr9 28200483 28200710 -89661917 - L1ME4a LINE L1 -111 6010 5788 24767 196 27 33 chr9 28200975 28206431 -89656196 - HERVI LTR ERV1 -2338 5447 26 1929 193 74 22 chr9 28206456 28206944 -89655683 - LTR10D LTR ERV1 0 513 1 330 295 70 19 chr9 28207175 28207331 -89655296 - L1ME4a LINE L1 -1 6120 5957 601 221 16 8 chr9 28207331 28207458 -89655169 - FLAM_A SINE Alu -2 131 4 688 225 0 0 chr9 28207501 28207630 -89654997 + FLAM_A SINE Alu 2 130 -3 2013 161 0 0 chr9 28207667 28207972 -89654655 - AluSx SINE Alu -7 305 1 291 213 27 0 chr9 28207987 28208062 -89654565 - L1ME4a LINE L1 -378 5786 5710 2392 102 0 6 chr9 28209884 28210198 -89652429 - AluSx SINE Alu 0 312 1 421 246 77 8 chr9 28210332 28210462 -89652165 - MER3 DNA MER1_type -70 139 1 1459 184 61 53 chr9 28211062 28211421 -89651206 - MLT1A1 LTR MaLR -3 362 1 1018 171 0 18 chr9 28211427 28211597 -89651030 - FRAM SINE Alu -9 167 1 2068 135 0 17 chr9 28211606 28211903 -89650724 - AluSx SINE Alu -20 292 1 2199 117 3 3 chr9 28211952 28212251 -89650376 - AluSx SINE Alu -13 299 1 1874 136 6 57 chr9 28212448 28212627 -89650000 - AluSq SINE Alu -12 301 143 2360 87 10 3 chr9 28212627 28212938 -89649689 - AluSp SINE Alu 0 313 1 1874 136 6 57 chr9 28212938 28213075 -89649552 - AluSq SINE Alu -170 143 1 835 206 62 34 chr9 28213569 28213778 -89648849 + MER20 DNA MER1_type 1 215 -4 2228 119 0 0 chr9 28213957 28214267 -89648360 - AluSx SINE Alu -2 310 1 5042 119 23 5 chr9 28214816 28215640 -89646987 + L1PA13 LINE L1 5321 6159 -4 34 0 0 0 chr9 28215666 28215700 -89646927 + AT_rich Low_complexity Low_complexity 1 34 0 3272 146 21 17 chr9 28215803 28216659 -89645968 + L1PB1 LINE L1 4928 5788 -363 237 139 0 0 chr9 28216671 28216714 -89645913 + (CATATA)n Simple_repeat Simple_repeat 2 44 0 2399 117 5 3 chr9 28216714 28217082 -89645545 + L1PB1 LINE L1 5782 6150 -1 2384 84 0 0 chr9 28217086 28217395 -89645232 + AluY SINE Alu 1 309 -2 1192 147 0 11 chr9 28217699 28217883 -89644744 + AluSg/x SINE Alu 118 299 -13 1463 161 39 0 chr9 28217975 28218254 -89644373 + L1MB8 LINE L1 5544 5833 -345 180 77 0 0 chr9 28218458 28218484 -89644143 + (TTTTTG)n Simple_repeat Simple_repeat 5 30 0 1888 171 7 3 chr9 28218507 28218816 -89643811 - AluJb SINE Alu 0 312 3 1974 164 0 7 chr9 28218820 28219124 -89643503 - AluJo SINE Alu -10 302 1 2041 92 0 121 chr9 28219243 28219591 -89643036 - AluSg SINE Alu -4 306 1 286 258 8 75 chr9 28219674 28219794 -89642833 + MIR SINE MIR 149 260 -2 272 263 168 0 chr9 28219895 28219990 -89642637 + MIR SINE MIR 119 229 -33 2292 85 3 0 chr9 28220136 28220453 -89642174 - AluSp SINE Alu 0 313 1 431 237 0 0 chr9 28221395 28221488 -89641139 + L1PB4 LINE L1 5976 6068 -88 249 328 59 34 chr9 28222121 28222240 -89640387 - MER5A DNA MER1_type -3 186 65 272 278 37 49 chr9 28222362 28222415 -89640212 + MER103 DNA DNA 6 58 -108 2288 113 0 0 chr9 28222415 28222724 -89639903 - AluSg SINE Alu -1 309 1 272 278 37 49 chr9 28222724 28222832 -89639795 + MER103 DNA DNA 58 165 -1 21 36 0 0 chr9 28223849 28223877 -89638750 + AT_rich Low_complexity Low_complexity 1 28 0 283 219 0 0 chr9 28224288 28224352 -89638275 + L1MB8 LINE L1 4804 4867 -1279 757 179 130 86 chr9 28224359 28224530 -89638097 + L1MB8 LINE L1 5865 6056 -122 1412 189 62 24 chr9 28224530 28224821 -89637806 + AluJo SINE Alu 1 302 0 757 179 130 86 chr9 28224821 28224950 -89637677 + L1MB8 LINE L1 6056 6178 0 403 133 81 204 chr9 28225473 28225684 -89636943 + MER53 DNA DNA 1 185 -4 1443 191 22 18 chr9 28226286 28226586 -89636041 + AluJo SINE Alu 21 312 0 1297 201 71 28 chr9 28227299 28227691 -89634936 + MLT1C LTR MaLR 3 411 -56 1510 209 15 0 chr9 28228635 28228908 -89633719 - AluJo SINE Alu -35 277 1 181 310 69 0 chr9 28229052 28229110 -89633517 - L2 LINE L2 -1 3312 3251 2178 96 0 27 chr9 28229143 28229436 -89633191 + AluSc SINE Alu 7 291 -18 2136 95 3 34 chr9 28229799 28230094 -89632533 + AluSx SINE Alu 1 286 -26 1360 195 29 46 chr9 28230869 28231176 -89631451 - AluJb SINE Alu 0 302 1 22 0 0 0 chr9 28231389 28231411 -89631216 + AT_rich Low_complexity Low_complexity 1 22 0 257 123 82 14 chr9 28231442 28231515 -89631112 - HAL1 LINE L1 -155 2352 2275 715 219 16 0 chr9 28231600 28231783 -89630844 - L1MA4 LINE L1 -7 6293 6108 1211 61 12 6 chr9 28231788 28231951 -89630676 + L1PA11 LINE L1 6010 6173 -1 4472 158 19 33 chr9 28231951 28233031 -89629596 - L1MA4 LINE L1 -190 6110 5042 1004 112 134 11 chr9 28233053 28233232 -89629395 - MSTA LTR MaLR -54 374 174 1078 127 0 0 chr9 28233232 28233382 -89629245 - AluSg/x SINE Alu -16 296 147 449 99 0 28 chr9 28233384 28233455 -89629172 - LTR7 LTR ERV1 -2 448 380 4266 159 16 4 chr9 28233566 28234371 -89628256 - L1MA4 LINE L1 -1096 5050 4236 2279 110 0 0 chr9 28234408 28234707 -89627920 + AluSx SINE Alu 2 300 -12 245 196 0 18 chr9 28236362 28236418 -89626209 - L1MC5 LINE L1 -99 7862 7808 23 33 0 0 chr9 28236468 28236498 -89626129 + AT_rich Low_complexity Low_complexity 1 30 0 2224 113 0 13 chr9 28237001 28237311 -89625316 - AluSx SINE Alu -6 306 1 1245 231 41 24 chr9 28237483 28237778 -89624849 + AluJo SINE Alu 1 300 -2 367 255 0 21 chr9 28237784 28237925 -89624702 + GA-rich Low_complexity Low_complexity 3 140 0 2541 62 0 3 chr9 28237999 28238304 -89624323 - AluY SINE Alu -7 304 1 194 314 12 70 chr9 28238406 28238492 -89624135 + MIR SINE MIR 84 164 -98 2020 129 3 7 chr9 28239525 28239827 -89622800 - AluSq SINE Alu -12 301 1 262 240 0 0 chr9 28240372 28240422 -89622205 + MER5A DNA MER1_type 9 58 -131 618 81 0 35 chr9 28240764 28240850 -89621777 + AluSg/x SINE Alu 209 291 -19 1680 149 81 50 chr9 28240997 28241139 -89621488 - L1MA4 LINE L1 -4 6296 6160 2350 47 6 38 chr9 28241139 28241456 -89621171 - AluY SINE Alu -4 307 1 1680 149 81 50 chr9 28241456 28241645 -89620982 - L1MA4 LINE L1 -140 6160 5949 2077 72 79 7 chr9 28241645 28241935 -89620692 - AluY SINE Alu 0 311 1 1680 149 81 50 chr9 28241935 28241984 -89620643 - L1MA4 LINE L1 -351 5949 5903 1576 100 0 0 chr9 28242225 28242435 -89620192 + AluSg/x SINE Alu 86 295 -14 208 244 12 12 chr9 28242550 28242636 -89619991 + (TATATG)n Simple_repeat Simple_repeat 5 90 0 1527 196 28 11 chr9 28243400 28243685 -89618942 - AluJo SINE Alu -22 290 1 2569 62 0 3 chr9 28243876 28244184 -89618443 - AluY SINE Alu -4 307 1 214 247 82 82 chr9 28244231 28244316 -89618311 - MIR SINE MIR -11 251 167 918 273 127 18 chr9 28244378 28244891 -89617736 - L1MC4a LINE L1 -1915 5893 5325 2316 101 0 0 chr9 28245101 28245399 -89617228 + AluY SINE Alu 1 298 -13 2248 105 3 0 chr9 28245788 28246074 -89616553 - AluSg SINE Alu -23 287 1 2363 84 0 3 chr9 28246523 28246820 -89615807 + AluSg SINE Alu 1 296 -14 446 342 47 10 chr9 28246863 28247056 -89615571 + MIR SINE MIR 46 245 -17 680 242 29 99 chr9 28247758 28247873 -89614754 - L1ME4a LINE L1 -51 6070 5948 438 20 0 0 chr9 28247873 28247924 -89614703 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 680 242 29 99 chr9 28247924 28248263 -89614364 - L1ME4a LINE L1 -173 5948 5648 473 269 34 0 chr9 28248339 28248458 -89614169 + L2 LINE L2 3150 3272 0 2495 57 0 3 chr9 28248593 28248890 -89613737 + AluY SINE Alu 1 296 -15 276 250 76 21 chr9 28248955 28249099 -89613528 - L1ME4a LINE L1 -96 6025 5874 1759 188 3 3 chr9 28249108 28249406 -89613221 - AluJo SINE Alu -14 298 1 2255 100 0 7 chr9 28249406 28249705 -89612922 - AluSq SINE Alu -16 297 1 32 26 0 0 chr9 28251363 28251402 -89611225 + AT_rich Low_complexity Low_complexity 1 39 0 22 56 0 0 chr9 28251432 28251468 -89611159 + AT_rich Low_complexity Low_complexity 1 36 0 2333 86 0 13 chr9 28251693 28252008 -89610619 + AluY SINE Alu 1 311 0 225 0 0 0 chr9 28252161 28252186 -89610441 + (TG)n Simple_repeat Simple_repeat 1 25 0 263 402 31 0 chr9 28252259 28252356 -89610271 + MIR SINE MIR 3 102 -160 312 172 35 0 chr9 28252380 28252438 -89610189 - MER92B LTR ERV1 -576 60 1 656 160 56 8 chr9 28252466 28252591 -89610036 - FLAM_C SINE Alu -2 131 1 262 162 27 0 chr9 28252660 28252734 -89609893 + (TA)n Simple_repeat Simple_repeat 1 76 0 368 292 117 53 chr9 28253772 28253933 -89608694 + L1ME4a LINE L1 5462 5611 -510 2238 91 0 20 chr9 28253933 28254229 -89608398 - AluSg SINE Alu -16 294 5 368 292 117 53 chr9 28254229 28254666 -89607961 + L1ME4a LINE L1 5611 6098 -23 4551 95 14 14 chr9 28254769 28255462 -89607165 + L1MA1 LINE L1 5610 6302 0 21 57 0 0 chr9 28255462 28255497 -89607130 + AT_rich Low_complexity Low_complexity 1 35 0 2202 120 13 0 chr9 28255710 28256010 -89606617 + AluSg SINE Alu 1 304 -6 194 222 0 79 chr9 28256710 28256741 -89605886 + L2 LINE L2 2992 3017 -255 2202 93 7 10 chr9 28256741 28257041 -89605586 + AluSx SINE Alu 1 299 -13 194 222 0 79 chr9 28257041 28257072 -89605555 + L2 LINE L2 3017 3049 -223 1229 299 75 9 chr9 28257078 28257519 -89605108 - MLT1H LTR MaLR -9 540 71 2344 208 50 80 chr9 28257567 28257616 -89605011 - L1ME1 LINE L1 -5 6161 6112 3442 170 70 4 chr9 28257616 28258259 -89604368 - L1MB2 LINE L1 -7 6164 5472 213 119 0 0 chr9 28258259 28258301 -89604326 + (TTG)n Simple_repeat Simple_repeat 1 42 0 3442 170 70 4 chr9 28258301 28258341 -89604286 - L1MB2 LINE L1 -699 5472 5436 2344 208 50 80 chr9 28258341 28259708 -89602919 - L1ME1 LINE L1 -54 6112 4790 2316 88 3 0 chr9 28259708 28260002 -89602625 - AluSc SINE Alu -14 295 1 203 250 77 0 chr9 28260897 28260949 -89601678 - L2 LINE L2 -3 3269 3214 23 0 0 0 chr9 28261248 28261271 -89601356 + AT_rich Low_complexity Low_complexity 1 23 0 1749 123 104 38 chr9 28261513 28261829 -89600798 - MER1B DNA MER1_type 0 337 1 257 367 22 0 chr9 28262382 28262472 -89600155 - L3 LINE CR1 -87 1490 1399 874 339 119 21 chr9 28262591 28263269 -89599358 - L2 LINE L2 -182 3090 2332 307 276 124 7 chr9 28264497 28264642 -89597985 - L1ME4a LINE L1 -169 5952 5791 413 304 95 12 chr9 28264684 28264852 -89597775 + MIR SINE MIR 5 186 -76 2472 55 0 0 chr9 28265351 28265641 -89596986 + AluY SINE Alu 1 290 -21 2203 110 0 7 chr9 28267107 28267417 -89595210 + AluSg SINE Alu 1 308 -2 5327 102 23 11 chr9 28267417 28268238 -89594389 - L1MA3 LINE L1 -180 6125 5295 3217 180 51 2 chr9 28268239 28268810 -89593817 - Tigger7 DNA MER2_type -134 599 1 216 321 25 49 chr9 28268844 28268925 -89593702 + MIR SINE MIR 50 128 -134 1235 122 35 44 chr9 28269094 28269323 -89593304 - L1 LINE L1 -1902 4244 4018 302 125 11 34 chr9 28269395 28269483 -89593144 + (TA)n Simple_repeat Simple_repeat 2 87 0 180 0 0 0 chr9 28269767 28269787 -89592840 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2271 103 0 3 chr9 28269843 28270145 -89592482 + AluSc SINE Alu 1 301 -8 2070 128 17 3 chr9 28270468 28270758 -89591869 - AluSx SINE Alu -18 294 1 945 65 8 0 chr9 28270781 28270904 -89591723 + THE1B-int LTR MaLR 1457 1580 0 1962 120 49 55 chr9 28270904 28271197 -89591430 + THE1B LTR MaLR 1 293 -71 2546 68 0 0 chr9 28271197 28271506 -89591121 - AluY SINE Alu -2 309 1 1962 120 49 55 chr9 28271506 28271578 -89591049 + THE1B LTR MaLR 293 364 0 17785 137 104 8 chr9 28271578 28273698 -89588929 - L1PA12 LINE L1 -4266 3318 821 2157 131 47 33 chr9 28273698 28274057 -89588570 + THE1B LTR MaLR 1 364 0 17785 137 104 8 chr9 28274057 28274964 -89587663 - L1PA12 LINE L1 -6763 821 3 566 241 23 1 chr9 28274969 28275111 -89587516 - MER33 DNA MER1_type -251 73 1 2079 174 42 38 chr9 28275195 28275581 -89587046 + MSTA LTR MaLR 1 391 -37 2069 129 10 0 chr9 28275581 28275876 -89586751 - AluSg SINE Alu -12 298 1 2079 174 42 38 chr9 28275876 28275915 -89586712 + MSTA LTR MaLR 391 428 0 189 0 0 0 chr9 28276170 28276191 -89586436 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 2426 60 3 0 chr9 28276194 28276478 -89586149 - AluY SINE Alu -26 285 1 273 98 0 0 chr9 28276598 28276639 -89585988 + (TA)n Simple_repeat Simple_repeat 2 42 0 517 286 12 18 chr9 28277391 28277562 -89585065 - MARNA DNA Mariner -348 238 69 1696 106 24 0 chr9 28278040 28278295 -89584332 - L1P LINE L1 -2039 4107 3847 483 327 121 23 chr9 28279036 28279639 -89582988 + L1MC/D LINE L1 4594 5255 -891 180 0 0 0 chr9 28279646 28279666 -89582961 + (T)n Simple_repeat Simple_repeat 1 20 0 1753 82 41 0 chr9 28279666 28279885 -89582742 - AluSg SINE Alu -82 228 1 180 0 0 0 chr9 28279897 28279917 -89582710 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 344 216 131 93 chr9 28279921 28280157 -89582470 + L1MC/D LINE L1 5288 5532 -2276 1944 138 27 17 chr9 28280219 28280516 -89582111 + AluSx SINE Alu 1 300 -12 1702 155 60 3 chr9 28280560 28280844 -89581783 + AluJo SINE Alu 1 300 -12 2141 102 0 0 chr9 28281096 28281371 -89581256 - AluSg SINE Alu -1 309 35 239 143 0 18 chr9 28281865 28281921 -89580706 + (GA)n Simple_repeat Simple_repeat 2 56 0 1908 108 4 0 chr9 28283985 28284236 -89578391 + AluSx SINE Alu 24 275 -37 377 253 146 28 chr9 28284595 28284773 -89577854 - MIR SINE MIR -56 206 8 2238 107 0 0 chr9 28285105 28285394 -89577233 - AluSg SINE Alu -16 294 6 306 247 0 0 chr9 28285813 28285886 -89576741 - L1M4 LINE L1 -1534 4612 4540 2249 95 0 13 chr9 28285933 28286237 -89576390 - AluSc SINE Alu -9 300 1 24 32 0 0 chr9 28286617 28286648 -89575979 + AT_rich Low_complexity Low_complexity 1 31 0 5439 65 124 0 chr9 28286861 28287596 -89575031 - LTR12 LTR ERV1 0 826 1 1039 233 22 13 chr9 28287668 28287900 -89574727 - MER8 DNA MER2_type -4 235 2 2343 65 3 17 chr9 28287951 28288245 -89574382 + AluY SINE Alu 5 294 -17 876 150 0 7 chr9 28288410 28288557 -89574070 + AluSg/x SINE Alu 165 310 -2 231 309 27 0 chr9 28289415 28289525 -89573102 + MIR SINE MIR 129 241 -21 4406 79 8 18 chr9 28289640 28290246 -89572381 + L1PA7 LINE L1 5554 6153 -1 2131 228 110 6 chr9 28290648 28291158 -89571469 - MER82 DNA MER2_type 0 653 91 235 280 0 43 chr9 28291248 28291341 -89571286 + L2 LINE L2 3225 3313 0 501 304 157 9 chr9 28291463 28291680 -89570947 - MIR SINE MIR 0 262 14 285 311 0 73 chr9 28292500 28292651 -89569976 - L2 LINE L2 -218 3054 2915 261 374 80 20 chr9 28292729 28292978 -89569649 - L2 LINE L2 -499 2815 2552 429 141 0 0 chr9 28293961 28294032 -89568595 + (TG)n Simple_repeat Simple_repeat 2 72 0 234 0 0 0 chr9 28294142 28294168 -89568459 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 270 303 53 30 chr9 28294731 28294863 -89567764 - MIR SINE MIR -70 192 58 272 362 35 9 chr9 28295052 28295168 -89567459 + MIR3 SINE MIR 10 128 -80 229 281 9 53 chr9 28295237 28295351 -89567276 - L2 LINE L2 -31 3241 3133 180 111 0 0 chr9 28296968 28296995 -89565632 + (A)n Simple_repeat Simple_repeat 1 27 0 356 303 17 80 chr9 28297584 28297822 -89564805 - MIR SINE MIR -34 228 6 295 273 0 0 chr9 28297840 28297917 -89564710 + MER103 DNA DNA 41 117 -49 1851 156 0 11 chr9 28298307 28298590 -89564037 + AluJo SINE Alu 1 280 -32 254 306 36 18 chr9 28298662 28298773 -89563854 + MIR SINE MIR 28 140 -122 2358 79 23 0 chr9 28298784 28299088 -89563539 + AluY SINE Alu 1 311 0 611 275 97 14 chr9 28300542 28300782 -89561845 + MIR SINE MIR 4 262 0 252 338 103 28 chr9 28301070 28301215 -89561412 + MIR SINE MIR 28 183 -79 2209 103 3 17 chr9 28301810 28302131 -89560496 - AluSx SINE Alu 0 312 1 398 315 125 5 chr9 28302193 28302393 -89560234 - MIR SINE MIR -13 249 26 793 293 22 33 chr9 28302697 28302970 -89559657 + Charlie8 DNA MER1_type 7 276 -2141 245 259 241 0 chr9 28303688 28303796 -89558831 - L2 LINE L2 0 3313 3180 2376 178 93 34 chr9 28304249 28304265 -89558362 - MER74A LTR ERVL 0 558 544 1445 170 31 69 chr9 28304265 28304583 -89558044 - AluJo SINE Alu -6 306 1 2376 178 93 34 chr9 28304583 28305093 -89557534 - MER74A LTR ERVL -14 544 1 216 0 0 0 chr9 28305207 28305231 -89557396 + (TA)n Simple_repeat Simple_repeat 2 25 0 2102 64 0 11 chr9 28306538 28306805 -89555822 + AluY SINE Alu 48 311 0 453 269 151 11 chr9 28307224 28307410 -89555217 + MIR SINE MIR 2 213 -49 201 318 159 0 chr9 28307556 28307682 -89554945 + L2 LINE L2 3119 3264 -8 428 232 0 0 chr9 28308019 28308101 -89554526 - MER81 DNA DNA -32 82 1 274 295 11 21 chr9 28308924 28309019 -89553608 + MER5A DNA MER1_type 35 128 -61 462 218 204 20 chr9 28309039 28309186 -89553441 - MER5A DNA MER1_type -7 182 9 600 223 51 25 chr9 28309387 28309544 -89553083 - MER103 DNA DNA -2 164 4 182 161 0 0 chr9 28309587 28309618 -89553009 - MER5C DNA MER1_type -293 31 1 1877 126 37 4 chr9 28309961 28310232 -89552395 - AluJb SINE Alu -10 302 23 228 214 171 0 chr9 28310901 28311002 -89551625 + MIR3 SINE MIR 67 188 -20 2414 89 0 0 chr9 28311150 28311452 -89551175 + AluSq SINE Alu 1 302 -11 304 105 18 18 chr9 28311947 28312004 -89550623 + L1ME4a LINE L1 5846 5902 -219 468 219 20 55 chr9 28312039 28312185 -89550442 + L1ME4a LINE L1 5978 6118 -3 727 212 20 7 chr9 28312228 28312379 -89550248 - MER3 DNA MER1_type -56 153 1 575 263 42 46 chr9 28313500 28313670 -89548957 - MLT1F1 LTR MaLR -342 225 55 2287 119 0 0 chr9 28313670 28313982 -89548645 - AluSx SINE Alu 0 312 1 575 263 42 46 chr9 28313982 28314028 -89548599 - MLT1F1 LTR MaLR -512 55 10 21 0 0 0 chr9 28314028 28314049 -89548578 + AT_rich Low_complexity Low_complexity 1 21 0 2406 125 31 0 chr9 28314350 28314701 -89547926 - Tigger3(Golem) DNA MER2_type 0 3029 2668 2301 113 0 3 chr9 28315339 28315640 -89546987 - AluSx SINE Alu -12 300 1 584 289 67 0 chr9 28315811 28316005 -89546622 - MIR SINE MIR -28 234 28 1790 197 14 32 chr9 28316017 28316387 -89546240 - MLT1A1 LTR MaLR -2 363 1 438 264 178 0 chr9 28316710 28316918 -89545709 - MER102a DNA MER1_type -9 321 77 21 0 0 0 chr9 28316931 28316952 -89545675 + AT_rich Low_complexity Low_complexity 1 21 0 767 133 17 0 chr9 28318256 28318376 -89544251 - L1MB3 LINE L1 0 6183 6062 4985 73 12 20 chr9 28318857 28319927 -89542700 - SVA Other Other -954 1386 1 1197 234 58 0 chr9 28320211 28320472 -89542155 - MER58 DNA MER1_type -65 276 1 362 241 102 0 chr9 28320528 28320636 -89541991 + MIR SINE MIR 51 169 -93 552 268 146 34 chr9 28322605 28322839 -89539788 + MIR SINE MIR 4 254 -8 207 269 0 0 chr9 28323753 28323805 -89538822 + T-rich Low_complexity Low_complexity 4 55 0 474 206 29 0 chr9 28326149 28326251 -89536376 + MIR SINE MIR 71 175 -87 275 317 122 66 chr9 28326384 28326687 -89535940 - L2 LINE L2 -16 3256 2937 461 273 23 51 chr9 28326935 28327111 -89535516 + MIR3 SINE MIR 36 206 -2 2166 73 63 3 chr9 28327248 28327535 -89535092 + AluY SINE Alu 1 304 -7 207 255 39 20 chr9 28327622 28327673 -89534954 + MIR SINE MIR 83 134 -74 327 329 84 7 chr9 28329473 28329628 -89532999 + MIR SINE MIR 6 172 -90 1642 163 31 17 chr9 28330062 28330356 -89532271 + AluJb SINE Alu 1 298 -14 410 261 175 76 chr9 28331174 28331580 -89531047 - Charlie8 DNA MER1_type -1931 486 41 662 221 14 14 chr9 28334264 28334404 -89528223 - FLAM_A SINE Alu 0 142 3 1178 227 69 119 chr9 28334407 28335055 -89527572 - L1MC4 LINE L1 -103 7939 7324 744 147 26 64 chr9 28335421 28335577 -89527050 + MER106A DNA MER1_type 47 196 -40 32536 105 12 59 chr9 28337289 28339908 -89522719 + L1PA7 LINE L1 12 2753 -3401 2177 125 0 13 chr9 28339908 28340220 -89522407 + AluY SINE Alu 1 308 -3 32536 105 12 59 chr9 28340220 28342127 -89520500 + L1PA7 LINE L1 2753 4749 -1405 2372 72 3 7 chr9 28342127 28342431 -89520196 + AluY SINE Alu 9 311 0 32536 105 12 59 chr9 28342431 28343248 -89519379 + L1PA7 LINE L1 4749 4989 -1165 2334 90 0 3 chr9 28343248 28343548 -89519079 + AluY SINE Alu 1 299 -12 32536 105 12 59 chr9 28343548 28344662 -89517965 + L1PA7 LINE L1 4989 6154 0 237 326 10 20 chr9 28344906 28345004 -89517623 + MIR SINE MIR 47 143 -119 21 0 0 0 chr9 28345105 28345126 -89517501 + AT_rich Low_complexity Low_complexity 1 21 0 419 304 53 66 chr9 28345348 28345591 -89517036 + Charlie8 DNA MER1_type 17 256 -2161 2369 79 3 3 chr9 28345980 28346285 -89516342 - AluY SINE Alu -6 305 1 1172 246 137 19 chr9 28347233 28347655 -89514972 + L2 LINE L2 2842 3313 0 22 56 0 0 chr9 28347713 28347749 -89514878 + AT_rich Low_complexity Low_complexity 1 36 0 608 282 94 14 chr9 28347778 28347991 -89514636 - MIR SINE MIR -16 246 17 199 327 0 0 chr9 28349674 28349729 -89512898 - L2 LINE L2 -19 3253 3199 705 218 202 16 chr9 28349879 28350067 -89512560 - MIR SINE MIR -38 224 2 22 0 0 0 chr9 28350094 28350116 -89512511 + AT_rich Low_complexity Low_complexity 1 22 0 377 261 61 9 chr9 28350820 28350935 -89511692 + MER103 DNA DNA 3 123 -43 1878 196 47 47 chr9 28351672 28352101 -89510526 - MER63B DNA MER1_type 0 436 8 2180 137 49 23 chr9 28352144 28352532 -89510095 - L1MA8 LINE L1 -5 6286 5889 227 147 0 0 chr9 28352804 28352838 -89509789 + LTR16A1 LTR ERVL 3 36 -421 734 279 50 50 chr9 28352890 28353274 -89509353 + MERVL LTR ERVL 3471 3854 -1910 917 261 66 4 chr9 28353282 28353523 -89509104 + MER76 LTR ERV 5 260 -428 305 309 61 64 chr9 28353774 28354133 -89508494 + HAL1 LINE L1 2144 2501 -6 249 322 73 45 chr9 28354211 28354353 -89508274 + LTR16C LTR ERVL 1 150 -341 2655 151 69 0 chr9 28354353 28354776 -89507851 - LTR47A LTR ERVL 0 452 1 249 322 73 45 chr9 28354776 28354810 -89507817 + LTR16C LTR ERVL 150 182 -309 322 217 43 0 chr9 28354932 28355001 -89507626 - LTR16C LTR ERVL -162 329 258 351 336 29 7 chr9 28355279 28355416 -89507211 + MERVL LTR ERVL 442 581 -4415 301 371 35 5 chr9 28355849 28356051 -89506576 + MERVL LTR ERVL 4819 5026 -459 622 319 80 48 chr9 28356397 28356873 -89505754 + LTR16C LTR ERVL 1 491 0 337 298 7 43 chr9 28357004 28357145 -89505482 - MIR SINE MIR -110 152 17 22 35 0 0 chr9 28357728 28357757 -89504870 + AT_rich Low_complexity Low_complexity 1 29 0 2036 142 13 0 chr9 28358212 28358514 -89504113 + AluSx SINE Alu 1 306 -6 2248 56 3 28 chr9 28359326 28359657 -89502970 - AluY SINE Alu 0 324 1 743 225 0 0 chr9 28359879 28360021 -89502606 - MLT1H1 LTR MaLR 0 555 414 2272 110 0 0 chr9 28360266 28360565 -89502062 + AluSx SINE Alu 5 303 -9 378 304 22 22 chr9 28360792 28360927 -89501700 - MIR SINE MIR -110 152 18 2709 165 11 15 chr9 28361267 28361728 -89500899 - MLT1C LTR MaLR -8 459 1 897 172 0 8 chr9 28361791 28361925 -89500702 - FLAM_C SINE Alu 0 133 1 269 250 16 16 chr9 28362182 28362246 -89500381 - L2 LINE L2 -18 3254 3191 27 62 0 0 chr9 28363062 28363110 -89499517 + AT_rich Low_complexity Low_complexity 1 48 0 5415 103 13 4 chr9 28363116 28363894 -89498733 + L1PB3 LINE L1 5368 6152 -2 267 143 20 51 chr9 28363907 28364005 -89498622 + (TTATA)n Simple_repeat Simple_repeat 5 99 0 1678 132 147 0 chr9 28364146 28364418 -89498209 - AluSx SINE Alu 0 312 1 2126 158 64 13 chr9 28364539 28364931 -89497696 + LTR3 LTR ERVK 5 416 -16 344 251 83 107 chr9 28365822 28366040 -89496587 - L1M4 LINE L1 -753 5393 5171 1930 136 0 24 chr9 28366040 28366334 -89496293 - AluJb SINE Alu -25 287 1 344 251 83 107 chr9 28366334 28366498 -89496129 - L1M4 LINE L1 -975 5171 5023 2626 36 3 0 chr9 28366498 28366801 -89495826 - AluY SINE Alu -7 304 1 344 251 83 107 chr9 28366801 28366911 -89495716 - L1M4 LINE L1 -1123 5023 4912 22 0 0 0 chr9 28367834 28367856 -89494771 + AT_rich Low_complexity Low_complexity 1 22 0 215 258 41 72 chr9 28371109 28371206 -89491421 + L2 LINE L2 3177 3270 -2 187 51 0 51 chr9 28371246 28371285 -89491342 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 340 259 22 29 chr9 28371686 28371825 -89490802 + (TATG)n Simple_repeat Simple_repeat 2 139 0 3427 197 11 14 chr9 28371877 28372522 -89490105 - MER82 DNA MER2_type -10 643 1 256 158 0 9 chr9 28372704 28372907 -89489720 + AluJo SINE Alu 1 288 -14 3743 135 56 7 chr9 28373183 28373879 -89488748 - L1MC2 LINE L1 -13 6331 5602 290 122 41 0 chr9 28373890 28373939 -89488688 + AluJ/FLAM SINE Alu 11 61 -241 439 106 106 24 chr9 28373944 28374029 -89488598 - L1MC2 LINE L1 -739 5605 5514 189 229 0 0 chr9 28374175 28374210 -89488417 + L2 LINE L2 1531 1565 -1749 2141 93 0 31 chr9 28374270 28374561 -89488066 + AluSx SINE Alu 23 304 -8 496 173 188 8 chr9 28374690 28374823 -89487804 - MIR SINE MIR -14 248 92 276 227 189 38 chr9 28375684 28375816 -89486811 + MIR SINE MIR 47 198 -64 2510 78 0 0 chr9 28376912 28377220 -89485407 + AluSc SINE Alu 1 308 -1 2518 74 0 0 chr9 28378183 28378492 -89484135 - AluSc SINE Alu 0 309 1 2167 113 10 10 chr9 28378809 28379111 -89483516 + AluSg SINE Alu 1 302 -8 297 295 188 13 chr9 28379225 28379374 -89483253 - MIR SINE MIR -3 259 85 219 36 0 0 chr9 28380172 28380200 -89482427 + (TAG)n Simple_repeat Simple_repeat 2 29 0 829 244 99 23 chr9 28380791 28381136 -89481491 - MER66A LTR ERV1 -10 468 98 645 203 127 19 chr9 28381152 28381439 -89481188 - MER41B LTR ERV1 -159 476 100 2098 111 17 0 chr9 28385061 28385359 -89477268 - AluSx SINE Alu -9 303 1 2335 225 73 13 chr9 28385869 28386483 -89476144 - MER82 DNA MER2_type -1 652 2 2411 91 0 0 chr9 28386619 28386926 -89475701 + AluSc SINE Alu 1 307 -2 441 236 64 0 chr9 28386986 28387096 -89475531 + MIR SINE MIR 56 172 -90 305 161 0 0 chr9 28387230 28387286 -89475341 + AluJb SINE Alu 120 175 -127 380 245 85 89 chr9 28387344 28387626 -89475001 - L1ME LINE L1 -464 5657 5377 * 441 208 113 24 chr9 28387621 28387789 -89474838 - HAL1b LINE L1 -888 460 278 1926 121 19 56 chr9 28388432 28388754 -89473873 - AluSx SINE Alu -2 310 1 1185 251 47 12 chr9 28390733 28391155 -89471472 - L1ME LINE L1 -2037 4109 3673 1233 160 27 0 chr9 28391160 28391385 -89471242 - L1MB4 LINE L1 -6 6174 5944 1235 121 12 0 chr9 28391387 28391560 -89471067 - AluSc SINE Alu 0 309 135 792 218 5 0 chr9 28391562 28391759 -89470868 - L1MB4 LINE L1 -222 5958 5761 442 144 19 19 chr9 28391785 28391889 -89470738 - L1ME LINE L1 -2446 3700 3597 * 832 303 122 43 chr9 28391888 28392568 -89470059 - L1M4 LINE L1 -5793 749 16 332 268 122 30 chr9 28392789 28392953 -89469674 + MIR SINE MIR 71 249 -13 25 0 0 0 chr9 28392953 28392978 -89469649 + AT_rich Low_complexity Low_complexity 1 25 0 352 258 83 50 chr9 28393123 28393243 -89469384 + MIR SINE MIR 80 203 -59 2193 120 0 0 chr9 28393349 28393648 -89468979 - AluSx SINE Alu -11 301 3 649 231 28 77 chr9 28394205 28394307 -89468320 - MER106A DNA MER1_type -1 235 130 1095 58 0 0 chr9 28394307 28394445 -89468182 + L1PA3 LINE L1 6018 6155 0 649 231 28 77 chr9 28394445 28394589 -89468038 - MER106A DNA MER1_type -106 130 1 253 108 0 0 chr9 28394894 28394931 -89467696 + AluSq SINE Alu 117 153 -150 1463 199 52 3 chr9 28395310 28395597 -89467030 - AluJb SINE Alu -11 301 1 1947 118 40 0 chr9 28395951 28396254 -89466373 - AluSx SINE Alu 0 314 1 2316 87 7 0 chr9 28396792 28397080 -89465547 + AluSc SINE Alu 1 290 -19 2883 73 13 0 chr9 28397261 28397644 -89464983 + L1PA8 LINE L1 5781 6168 -4 296 272 192 48 chr9 28397769 28397894 -89464733 - MER5A DNA MER1_type 0 189 47 442 287 102 0 chr9 28398278 28398435 -89464192 + MIR SINE MIR 16 188 -74 240 154 0 0 chr9 28398933 28398985 -89463642 + (TATATG)n Simple_repeat Simple_repeat 3 54 0 762 258 57 0 chr9 28399100 28399294 -89463333 - MIR SINE MIR -47 215 11 566 279 46 63 chr9 28399627 28399864 -89462763 + MIR SINE MIR 2 234 -28 226 279 27 45 chr9 28400620 28400731 -89461896 + L2 LINE L2 822 930 -2384 240 280 215 26 chr9 28400827 28401166 -89461461 + L2 LINE L2 1370 1772 -1542 580 307 155 32 chr9 28401353 28402396 -89460231 + L2 LINE L2 1851 3312 -1 231 304 51 0 chr9 28404070 28404149 -89458478 - MIR SINE MIR -121 141 59 223 273 178 45 chr9 28404346 28404545 -89458082 + MIR SINE MIR 16 248 -14 7470 84 11 2 chr9 28404651 28406455 -89456172 - L1PA7 LINE L1 0 6154 4328 706 12 0 0 chr9 28406455 28406541 -89456086 + AluSg/x SINE Alu 219 304 -5 21609 116 29 95 chr9 28406541 28411175 -89451452 - L1PA7 LINE L1 -1817 4329 3 216 0 0 0 chr9 28411319 28411343 -89451284 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 524 256 65 65 chr9 28411602 28411848 -89450779 - MIR SINE MIR -10 252 7 734 224 88 19 chr9 28412811 28413016 -89449611 + MER58A DNA MER1_type 4 222 -2 852 209 94 0 chr9 28413025 28413216 -89449411 + MER3 DNA MER1_type 1 209 0 597 340 52 5 chr9 28414497 28414709 -89447918 + MIR SINE MIR 10 231 -31 41496 45 1 1 chr9 28416834 28422984 -89439643 - L1PA4 LINE L1 -6 6149 1 207 191 0 0 chr9 28423568 28423631 -89438996 + (TA)n Simple_repeat Simple_repeat 1 63 0 429 20 0 0 chr9 28423631 28423681 -89438946 + (TG)n Simple_repeat Simple_repeat 1 50 0 1669 170 22 0 chr9 28423687 28423957 -89438670 - AluJo SINE Alu -36 276 1 10757 154 36 12 chr9 28423967 28426866 -89435761 - L1MA8 LINE L1 -4 7308 4338 3730 237 96 26 chr9 28426863 28428925 -89433702 - L1MA8 LINE L1 -3629 3538 1619 * 307 342 21 43 chr9 28429805 28429992 -89432635 - L1MA8 LINE L1 -6984 184 2 398 226 171 0 chr9 28430184 28430279 -89432348 + MER6 DNA MER2_type -65 12 -853 7016 61 18 2 chr9 28430279 28431836 -89430791 - L1PA7 LINE L1 -11 6143 4570 398 226 171 0 chr9 28431836 28431910 -89430717 + MER6 DNA MER2_type 12 861 -4 22 0 0 0 chr9 28432854 28432876 -89429751 + AT_rich Low_complexity Low_complexity 1 22 0 497 248 78 0 chr9 28433695 28433824 -89428803 + MIR3 SINE MIR 65 203 -5 2146 165 40 3 chr9 28434582 28434934 -89427693 + MLT1A1 LTR MaLR 1 365 0 225 299 93 19 chr9 28435067 28435174 -89427453 - MER5A DNA MER1_type -21 168 54 * 240 379 30 15 chr9 28435085 28435217 -89427410 + MER5A DNA MER1_type 56 189 0 348 301 88 0 chr9 28435349 28435462 -89427165 - MER94 DNA DNA -11 123 1 22802 97 52 19 chr9 28435621 28441827 -89420800 - L1PA7 LINE L1 -3 6466 4 2516 77 0 27 chr9 28442703 28443041 -89419586 - L1PA8 LINE L1 -69 6103 5775 267 260 0 14 chr9 28443134 28443207 -89419420 - L1ME LINE L1 -249 5872 5801 383 275 38 23 chr9 28443803 28443934 -89418693 + MIR SINE MIR 34 166 -96 209 270 40 14 chr9 28444026 28444100 -89418527 + MIR3 SINE MIR 90 165 -43 184 358 45 50 chr9 28444980 28445159 -89417468 - L2 LINE L2 -159 3113 2936 447 356 63 48 chr9 28445950 28446617 -89416010 + L2 LINE L2 2555 3239 -33 349 283 19 82 chr9 28446710 28446869 -89415758 + MER5B DNA MER1_type 26 174 -4 21 0 0 0 chr9 28450360 28450381 -89412246 + AT_rich Low_complexity Low_complexity 1 21 0 1690 158 0 76 chr9 28450540 28450869 -89411758 + AluJo SINE Alu 1 304 -8 33 25 0 0 chr9 28450994 28451034 -89411593 + AT_rich Low_complexity Low_complexity 1 40 0 330 272 0 22 chr9 28451061 28451153 -89411474 - L1MC4 LINE L1 -1339 6703 6614 2213 78 0 20 chr9 28451172 28451465 -89411162 - AluSc SINE Alu -22 287 1 254 29 29 0 chr9 28452008 28452043 -89410584 + (TG)n Simple_repeat Simple_repeat 2 37 0 1040 153 148 0 chr9 28453318 28453507 -89409120 - MER20 DNA MER1_type -1 218 2 276 300 27 73 chr9 28454858 28455008 -89407619 - MER5A DNA MER1_type 0 189 47 995 199 33 0 chr9 28455037 28455218 -89407409 + MER5A DNA MER1_type 3 189 0 371 247 0 0 chr9 28455940 28456013 -89406614 + MER117 DNA MER1_type 125 197 0 459 182 107 41 chr9 28456952 28457073 -89405554 - MER94 DNA DNA 0 134 6 237 303 0 0 chr9 28457725 28457791 -89404836 + MIR SINE MIR 74 139 -123 210 283 0 0 chr9 28457895 28457941 -89404686 + polypurine Low_complexity Low_complexity 3 48 0 329 257 176 22 chr9 28457997 28458219 -89404408 + HAL1b LINE L1 1062 1317 -31 225 274 32 0 chr9 28459577 28459639 -89402988 + MER117 DNA MER1_type 1 64 -133 598 289 178 0 chr9 28459801 28459998 -89402629 - MIR SINE MIR -12 250 19 231 227 0 0 chr9 28460416 28460473 -89402154 - MIR SINE MIR -62 146 97 282 278 0 67 chr9 28461123 28461213 -89401414 + MER5A DNA MER1_type 105 188 -1 523 246 66 55 chr9 28461325 28461508 -89401119 + MIR SINE MIR 5 189 -73 613 279 106 66 chr9 28462083 28463125 -89399502 + L1MC/D LINE L1 4771 5851 -344 1847 135 14 17 chr9 28463215 28463504 -89399123 + AluJo SINE Alu 1 288 -24 246 268 35 3 chr9 28463645 28463771 -89398856 + L1ME4a LINE L1 5966 8041 -1 458 143 14 0 chr9 28463958 28464028 -89398599 - 5S rRNA rRNA -50 71 1 1314 131 5 5 chr9 28465041 28465239 -89397388 + MSTA LTR MaLR 1 198 -230 429 69 0 0 chr9 28465239 28465297 -89397330 - L1PA4 LINE L1 -169 5986 5929 1363 32 0 0 chr9 28465297 28465454 -89397173 + L1PA4 LINE L1 5999 6155 0 23 68 0 0 chr9 28465506 28465550 -89397077 + AT_rich Low_complexity Low_complexity 1 44 0 1008 126 73 138 chr9 28465550 28465811 -89396816 + MSTA LTR MaLR 185 428 0 458 217 35 9 chr9 28465930 28466045 -89396582 + L1ME LINE L1 5682 5799 -322 261 285 154 8 chr9 28466447 28466577 -89396050 + MIR SINE MIR 68 216 -46 789 249 34 38 chr9 28466748 28466985 -89395642 + MER106A DNA MER1_type 1 236 0 1533 169 24 30 chr9 28468210 28468505 -89394122 + AluJo SINE Alu 1 293 -19 203 287 58 11 chr9 28468546 28468633 -89393994 + MIR SINE MIR 99 189 -73 846 170 44 66 chr9 28468892 28469074 -89393553 + MER5A DNA MER1_type 12 189 0 378 237 53 41 chr9 28469074 28469243 -89393384 + HAL1 LINE L1 2330 2500 -7 488 338 119 15 chr9 28471899 28472242 -89390385 + L2 LINE L2 2599 2977 -337 1340 223 49 24 chr9 28472472 28472800 -89389827 - MLT1D LTR MaLR -53 452 117 1147 207 9 4 chr9 28472810 28473037 -89389590 + MER106A DNA MER1_type 7 234 -2 215 280 40 0 chr9 28473039 28473089 -89389538 + L2 LINE L2 3148 3199 -73 829 210 67 82 chr9 28473292 28473621 -89389006 + L2 LINE L2 2988 3311 -2 2233 210 47 32 chr9 28473948 28474305 -89388322 - L1ME3 LINE L1 -2 6160 5789 2137 149 15 66 chr9 28474305 28474714 -89387913 + MLT1B LTR MaLR 3 390 0 2233 210 47 32 chr9 28474714 28474955 -89387672 - L1ME3 LINE L1 -373 5789 5553 182 302 0 19 chr9 28475640 28475693 -89386934 + MIR3 SINE MIR 4 55 -153 987 142 82 0 chr9 28475734 28475917 -89386710 - MER2 DNA MER2_type -1 344 147 412 301 79 30 chr9 28476322 28476525 -89386102 - MIR SINE MIR -32 230 18 1713 172 17 27 chr9 28477263 28477559 -89385068 - AluJo SINE Alu -17 295 3 283 291 11 30 chr9 28478942 28479124 -89383503 - MIR SINE MIR -35 227 3 443 235 167 19 chr9 28480562 28480724 -89381903 - MER58A DNA MER1_type 0 224 39 583 203 33 33 chr9 28480729 28480882 -89381745 + L1MB7 LINE L1 5814 5966 -212 1310 110 20 0 chr9 28480884 28481084 -89381543 + Tigger2 DNA MER2_type 3 206 -2512 885 155 34 0 chr9 28481085 28481233 -89381394 + Tigger2 DNA MER2_type 2556 2708 -10 652 244 17 0 chr9 28481234 28481414 -89381213 + L1MB7 LINE L1 5966 6148 -36 251 293 53 0 chr9 28481420 28481495 -89381132 - MER58 DNA MER1_type -145 196 1 2633 240 96 27 chr9 28482239 28483424 -89379203 + L1ME LINE L1 3 1261 -4819 5537 147 34 13 chr9 28483771 28484542 -89378085 + L1MA9 LINE L1 4568 5321 -991 2320 105 3 0 chr9 28484542 28484847 -89377780 - AluSp SINE Alu -7 306 1 5537 147 34 13 chr9 28484847 28485781 -89376846 + L1MA9 LINE L1 5321 6312 0 7468 37 0 0 chr9 28486350 28487350 -89375277 + L1PA4 LINE L1 5177 6155 0 21 0 0 0 chr9 28487468 28487489 -89375138 + AT_rich Low_complexity Low_complexity 1 21 0 1150 151 169 4 chr9 28487696 28487974 -89374653 + MER33 DNA MER1_type 1 324 0 1193 137 0 0 chr9 28488375 28488536 -89374091 - FRAM SINE Alu -18 158 1 222 62 0 0 chr9 28488559 28488591 -89374036 + (A)n Simple_repeat Simple_repeat 1 32 0 490 245 0 0 chr9 28488613 28488711 -89373916 + MER5A DNA MER1_type 9 106 -83 833 238 16 5 chr9 28489282 28489467 -89373160 + MER91B DNA MER1_type 1 187 -3 689 288 162 45 chr9 28489737 28490095 -89372532 - L2 LINE L2 -3 3269 2870 690 173 30 30 chr9 28490096 28490229 -89372398 + MER5A DNA MER1_type 3 135 -54 251 264 110 0 chr9 28490869 28490960 -89371667 + L2 LINE L2 3210 3310 -3 1577 159 133 0 chr9 28491694 28491958 -89370669 - AluJb SINE Alu -13 299 1 2255 120 3 32 chr9 28492007 28492381 -89370246 + THE1C LTR MaLR 1 363 -12 274 219 14 27 chr9 28492565 28492638 -89369989 + LTR67 LTR ERVL 479 550 -7 1231 175 35 0 chr9 28494121 28494349 -89368278 - MER46A DNA MER2_type 0 236 1 2176 129 0 0 chr9 28494787 28495089 -89367538 + AluSx SINE Alu 1 302 -10 289 226 89 124 chr9 28495584 28495987 -89366640 + L1ME LINE L1 2170 2558 -3522 423 287 144 17 chr9 28496549 28496730 -89365897 + MIR SINE MIR 23 226 -36 1015 244 8 21 chr9 28497403 28497481 -89365146 - MIR SINE MIR 0 262 185 1353 191 50 28 chr9 28497481 28497696 -89364931 + AluJo SINE Alu 3 227 -85 2395 88 0 0 chr9 28497696 28497992 -89364635 + AluY SINE Alu 1 296 -15 1353 191 50 28 chr9 28497992 28498058 -89364569 + AluJo SINE Alu 227 290 -22 1015 244 8 21 chr9 28498058 28498213 -89364414 - MIR SINE MIR -77 185 32 303 269 97 48 chr9 28498218 28498363 -89364264 - MIR3 SINE MIR -3 205 54 223 315 77 46 chr9 28498545 28498675 -89363952 - MIR SINE MIR -82 180 47 211 379 100 29 chr9 28498678 28499029 -89363598 + L2 LINE L2 2817 3192 -80 282 348 101 18 chr9 28499035 28499262 -89363365 + MIR SINE MIR 3 248 -14 2232 109 0 0 chr9 28499300 28499602 -89363025 + AluSg SINE Alu 1 302 -8 285 300 102 37 chr9 28500391 28500620 -89362007 - MIR SINE MIR -1 261 15 276 351 0 0 chr9 28500731 28500808 -89361819 + MIR SINE MIR 7 83 -179 575 283 57 11 chr9 28500899 28501076 -89361551 - MIR SINE MIR -57 205 21 424 213 133 16 chr9 28501725 28501889 -89360738 + MER5A DNA MER1_type 4 189 0 1734 174 6 13 chr9 28501988 28502299 -89360328 + AluJo SINE Alu 1 309 -3 417 269 158 12 chr9 28502834 28503005 -89359622 + MLT1H LTR MaLR 15 210 -339 257 250 149 24 chr9 28503155 28503323 -89359304 + MLT1H LTR MaLR 345 533 -16 2167 124 0 13 chr9 28503352 28503659 -89358968 + AluSc SINE Alu 1 303 -6 197 350 70 10 chr9 28505020 28505120 -89357507 + MIR SINE MIR 157 262 0 464 248 70 45 chr9 28505543 28505700 -89356927 - MIR SINE MIR -49 213 53 590 297 83 15 chr9 28505704 28505970 -89356657 + L2 LINE L2 2881 3164 -149 211 111 0 28 chr9 28506082 28506118 -89356509 + (TGGA)n Simple_repeat Simple_repeat 1 35 0 2038 108 56 3 chr9 28506207 28506494 -89356133 + AluSq SINE Alu 1 302 -11 211 188 62 0 chr9 28506648 28506696 -89355931 - L2 LINE L2 -4 3309 3259 565 93 0 0 chr9 28507922 28507997 -89354630 + AluS SINE Alu 1 75 -238 1072 62 0 0 chr9 28507997 28508142 -89354485 + L1PA7 LINE L1 6010 6154 0 2201 88 3 10 chr9 28508846 28509141 -89353486 - AluSg SINE Alu -17 293 1 21 0 0 0 chr9 28509685 28509706 -89352921 + AT_rich Low_complexity Low_complexity 1 21 0 375 302 101 16 chr9 28510500 28510629 -89351998 - L2 LINE L2 0 3272 3133 201 264 293 9 chr9 28510875 28511087 -89351540 - L3b LINE CR1 -176 1407 1136 1745 163 0 17 chr9 28511690 28511984 -89350643 - AluJb SINE Alu -23 289 1 298 306 116 35 chr9 28512859 28513032 -89349595 - MIR SINE MIR -27 235 49 380 292 11 0 chr9 28513094 28513183 -89349444 + L2 LINE L2 3224 3313 0 329 288 68 25 chr9 28513217 28513335 -89349292 - L2 LINE L2 0 3313 3191 600 228 13 74 chr9 28513576 28513841 -89348786 + MLT1H LTR MaLR 5 293 -256 258 186 85 76 chr9 28513831 28513949 -89348678 + MLT1H LTR MaLR 412 530 -12 * 354 297 104 16 chr9 28513976 28514168 -89348459 + L1ME LINE L1 5381 5589 -2219 642 300 40 4 chr9 28514186 28514436 -89348191 - MIR SINE MIR -1 261 3 2883 211 69 50 chr9 28514450 28515280 -89347347 + L1ME1 LINE L1 4863 5719 -447 2532 42 0 23 chr9 28515280 28515588 -89347039 + AluY SINE Alu 1 301 -10 2883 211 69 50 chr9 28515588 28516022 -89346605 + L1ME1 LINE L1 5719 6143 -23 320 246 85 0 chr9 28516078 28516196 -89346431 + L1ME LINE L1 5679 5806 -356 24 32 0 0 chr9 28516403 28516434 -89346193 + AT_rich Low_complexity Low_complexity 1 31 0 200 300 311 0 chr9 28516469 28516559 -89346068 + L2 LINE L2 3115 3232 -40 204 232 72 43 chr9 28516717 28516786 -89345841 + MIR SINE MIR 116 186 -76 204 373 25 17 chr9 28517522 28517640 -89344987 - L3 LINE CR1 -16 1561 1443 2407 81 0 0 chr9 28518012 28518307 -89344320 - AluSc SINE Alu -14 295 1 222 293 10 40 chr9 28518350 28518449 -89344178 + L2 LINE L2 2954 3049 -223 479 272 189 0 chr9 28518944 28519135 -89343492 + LTR33 LTR ERVL 127 353 -168 296 313 52 15 chr9 28519382 28519516 -89343111 - MIR SINE MIR -25 237 99 306 313 176 18 chr9 28519847 28520125 -89342502 + L2 LINE L2 2182 2503 -811 470 196 0 31 chr9 28520518 28520615 -89342012 + Tigger2 DNA MER2_type 2614 2707 -11 26 74 0 0 chr9 28520696 28520750 -89341877 + AT_rich Low_complexity Low_complexity 1 54 0 933 200 6 0 chr9 28520870 28521030 -89341597 - MER5A DNA MER1_type -1 188 28 363 147 59 0 chr9 28521397 28521465 -89341162 + Tigger2 DNA MER2_type 2553 2624 -94 596 233 70 52 chr9 28521470 28521642 -89340985 - MIR SINE MIR -65 197 23 2234 105 0 3 chr9 28521659 28521982 -89340645 + AluSp SINE Alu 1 322 0 421 289 138 4 chr9 28522556 28522809 -89339818 + L1ME LINE L1 5463 5749 -372 1822 142 16 67 chr9 28522894 28523210 -89339417 - AluJb SINE Alu -9 303 4 201 219 24 0 chr9 28523228 28523269 -89339358 - MIR SINE MIR -217 45 4 26 74 0 0 chr9 28523532 28523586 -89339041 + AT_rich Low_complexity Low_complexity 1 54 0 2464 86 0 3 chr9 28523600 28523903 -89338724 - AluSg SINE Alu -8 302 1 1025 181 110 8 chr9 28524096 28524350 -89338277 + HAL1 LINE L1 2 281 -2226 1814 147 7 33 chr9 28524479 28524661 -89337966 + AluJo SINE Alu 3 175 -137 704 0 9 56 chr9 28524661 28524768 -89337859 + (TTTTA)n Simple_repeat Simple_repeat 3 104 0 1814 147 7 33 chr9 28524768 28524891 -89337736 + AluJo SINE Alu 175 300 -12 2198 77 42 3 chr9 28525006 28525292 -89337335 - AluY SINE Alu -14 297 1 989 208 6 17 chr9 28525329 28525502 -89337125 + FAM SINE Alu 1 171 -4 1303 76 0 0 chr9 28525923 28526080 -89336547 - AluSg/x SINE Alu -12 300 144 815 192 0 8 chr9 28526081 28526211 -89336416 + AluJo SINE Alu 121 249 -63 22 0 0 0 chr9 28526704 28526726 -89335901 + AT_rich Low_complexity Low_complexity 1 22 0 2225 98 3 3 chr9 28526726 28527023 -89335604 - AluSp SINE Alu -16 297 1 2297 86 0 0 chr9 28527717 28528008 -89334619 - AluSc SINE Alu -13 296 6 2217 188 40 22 chr9 28528277 28528777 -89333850 + L1M4 LINE L1 4738 5246 -900 1532 136 0 0 chr9 28528884 28529098 -89333529 - AluSg SINE Alu -96 214 1 9532 111 14 5 chr9 28529104 28530531 -89332096 - L1PBa LINE L1 -4597 2266 827 4128 202 7 17 chr9 28530522 28531323 -89331304 + L1 LINE L1 3571 4379 -1767 * 2248 88 14 0 chr9 28531323 28531618 -89331009 + AluY SINE Alu 1 299 -12 4128 202 7 17 chr9 28531618 28531650 -89330977 + L1 LINE L1 4379 4410 -1736 213 39 0 0 chr9 28531650 28531676 -89330951 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 4128 202 7 17 chr9 28531676 28531722 -89330905 + L1 LINE L1 4410 4442 -1704 312 320 31 39 chr9 28531970 28532098 -89330529 - L2 LINE L2 0 3272 3146 449 308 184 24 chr9 28532871 28532885 -89329742 - L3 LINE CR1 -376 1201 1191 2098 112 20 10 chr9 28532885 28533190 -89329437 - AluSx SINE Alu -4 308 1 449 308 184 24 chr9 28533190 28533549 -89329078 - L3 LINE CR1 -386 1191 768 1475 149 42 42 chr9 28533598 28533860 -89328767 + MER2 DNA MER2_type 2 263 -82 800 157 30 37 chr9 28533910 28534044 -89328583 - FLAM_C SINE Alu 0 133 1 813 209 8 0 chr9 28534129 28534263 -89328364 + AluJo SINE Alu 2 136 -176 2592 323 31 42 chr9 28534510 28534881 -89327746 - Tigger7 DNA MER2_type -512 1975 1602 2163 96 3 56 chr9 28534881 28535203 -89327424 + AluSg SINE Alu 1 305 -5 2592 323 31 42 chr9 28535203 28536219 -89326408 - Tigger7 DNA MER2_type -885 1602 602 2266 96 3 7 chr9 28536219 28536522 -89326105 - AluSq SINE Alu -11 302 1 2592 323 31 42 chr9 28536522 28536623 -89326004 - Tigger7 DNA MER2_type -1885 602 501 1113 147 16 27 chr9 28537155 28537339 -89325288 + Tigger2a DNA MER2_type 1 182 -252 2623 200 61 62 chr9 28537478 28538380 -89324247 - L1ME LINE L1 -473 5693 4791 1713 179 34 3 chr9 28538380 28538671 -89323956 - AluJo SINE Alu -12 300 1 2623 200 61 62 chr9 28538671 28538720 -89323907 - L1ME LINE L1 -1375 4791 4743 2270 104 3 0 chr9 28538720 28539019 -89323608 - AluSx SINE Alu -12 300 1 2623 200 61 62 chr9 28539019 28539120 -89323507 - L1ME LINE L1 -1423 4743 4658 2374 203 42 75 chr9 28539118 28539409 -89323218 - L1ME LINE L1 -3025 3121 2822 * 2285 113 0 3 chr9 28539409 28539719 -89322908 - AluSg1 SINE Alu 0 309 1 2374 203 42 75 chr9 28539719 28539910 -89322717 - L1ME LINE L1 -3324 2822 2626 1572 211 7 0 chr9 28539910 28540194 -89322433 + AluJo SINE Alu 11 296 -16 2374 203 42 75 chr9 28540194 28540245 -89322382 - L1ME LINE L1 -3520 2626 2575 585 52 0 26 chr9 28540245 28540322 -89322305 - L1PA8 LINE L1 -2 6170 6096 2374 203 42 75 chr9 28540322 28540596 -89322031 - L1ME LINE L1 -3571 2575 2339 2266 107 0 0 chr9 28540801 28541100 -89321527 + AluSc SINE Alu 1 299 -10 2022 141 149 16 chr9 28541116 28541492 -89321135 - MSTB LTR MaLR 0 426 1 10095 187 8 2 chr9 28541492 28543132 -89319495 - MSTB-int LTR MaLR 0 1651 1 2276 150 94 13 chr9 28543132 28543526 -89319101 - MSTB LTR MaLR 0 426 1 291 308 44 33 chr9 28544125 28544216 -89318411 + L2 LINE L2 3126 3217 -55 207 242 30 146 chr9 28544753 28544918 -89317709 + L2 LINE L2 2829 2974 -340 1612 92 0 0 chr9 28545667 28545884 -89316743 - pTR5 LTR ERV1 -2047 391 175 260 276 10 0 chr9 28545891 28545989 -89316638 - LTR30 LTR ERV1 -80 642 544 5237 124 51 48 chr9 28545989 28547097 -89315530 - pTR5 LTR ERV1 -413 2025 741 212 269 0 39 chr9 28547097 28547175 -89315452 + MIR SINE MIR 188 262 0 646 277 113 9 chr9 28547498 28547826 -89314801 + HAL1 LINE L1 2 363 -2144 1861 95 0 0 chr9 28547826 28548058 -89314569 + AluSc SINE Alu 1 232 -77 2271 100 0 7 chr9 28549138 28549437 -89313190 + AluSq SINE Alu 1 297 -16 1838 178 3 3 chr9 28549437 28549735 -89312892 + AluJo SINE Alu 1 298 -14 309 237 65 47 chr9 28549744 28549913 -89312714 + L1ME4a LINE L1 5874 6045 -76 2514 57 0 0 chr9 28549953 28550249 -89312378 - AluY SINE Alu -15 296 1 3193 145 38 99 chr9 28550270 28551000 -89311627 + L1MB8 LINE L1 5428 6106 -72 661 215 16 0 chr9 28551000 28551121 -89311506 - FLAM_A SINE Alu -10 123 1 3193 145 38 99 chr9 28551121 28551190 -89311437 + L1MB8 LINE L1 6106 6178 0 967 250 130 32 chr9 28551280 28551688 -89310939 + HAL1 LINE L1 584 1031 -1476 2263 169 71 22 chr9 28551704 28552166 -89310461 + L1MC3 LINE L1 5782 6266 -1519 234 269 184 14 chr9 28552434 28552575 -89310052 - MIR SINE MIR -32 230 66 2386 82 0 3 chr9 28552661 28552954 -89309673 + AluY SINE Alu 1 292 -19 185 263 118 26 chr9 28553389 28553465 -89309162 - MIR SINE MIR -160 102 20 201 39 0 0 chr9 28553542 28553568 -89309059 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2021 125 0 3 chr9 28553572 28553859 -89308768 - AluJb SINE Alu -26 286 1 21 0 0 0 chr9 28554580 28554601 -89308026 + AT_rich Low_complexity Low_complexity 1 21 0 2302 91 0 0 chr9 28555053 28555349 -89307278 - AluSg SINE Alu -14 296 1 561 286 94 4 chr9 28556214 28556448 -89306179 + L1ME LINE L1 5566 5820 -301 2392 63 0 3 chr9 28556458 28556772 -89305855 + AluY SINE Alu 1 313 0 571 304 65 20 chr9 28557385 28557632 -89304995 - MIR SINE MIR 0 262 5 331 250 0 42 chr9 28557915 28557987 -89304640 - L2 LINE L2 0 3313 3245 2432 66 0 10 chr9 28558061 28558362 -89304265 - AluY SINE Alu -13 298 1 397 89 0 0 chr9 28558461 28558517 -89304110 - MADE1 DNA Mariner 0 80 25 296 205 145 6 chr9 28558532 28558710 -89303917 + L1ME3A LINE L1 5191 5442 -800 466 296 159 11 chr9 28558744 28559116 -89303511 + L1ME3A LINE L1 5530 5956 -214 387 336 148 0 chr9 28559396 28559613 -89303014 - L2 LINE L2 -611 2703 2455 206 268 0 70 chr9 28560747 28560818 -89301809 + L2 LINE L2 3173 3238 -75 2177 125 3 0 chr9 28560821 28561125 -89301502 - AluSx SINE Alu -7 305 1 2451 179 85 0 chr9 28561376 28561823 -89300804 - MLT1D LTR MaLR 0 505 21 324 262 8 74 chr9 28561936 28562058 -89300569 - MIR SINE MIR -22 240 127 556 247 232 58 chr9 28562114 28562563 -89300064 + MLT1H LTR MaLR 23 549 0 180 320 0 0 chr9 28562563 28562613 -89300014 - MIR SINE MIR -189 73 24 1896 149 13 0 chr9 28562665 28562966 -89299661 + AluSx SINE Alu 2 306 -6 313 204 5 0 chr9 28562980 28563056 -89299571 + MIR3 SINE MIR 79 156 -52 2436 91 0 0 chr9 28563660 28563969 -89298658 - AluY SINE Alu -2 309 1 407 295 149 24 chr9 28564323 28564618 -89298009 + L2 LINE L2 2941 3272 0 255 319 35 0 chr9 28564944 28565060 -89297567 + MER113 DNA MER1_type? 1 120 -401 477 243 29 6 chr9 28565101 28565274 -89297353 + (TA)n Simple_repeat Simple_repeat 1 177 0 28 29 0 0 chr9 28565274 28565309 -89297318 + AT_rich Low_complexity Low_complexity 1 35 0 2271 101 3 16 chr9 28565393 28565701 -89296926 - AluSp SINE Alu -9 304 1 504 340 48 10 chr9 28566309 28566518 -89296109 - L2 LINE L2 -187 3085 2869 210 191 0 0 chr9 28566826 28566873 -89295754 + (CA)n Simple_repeat Simple_repeat 1 47 0 321 306 86 53 chr9 28567340 28567549 -89295078 - MIR SINE MIR 0 262 47 495 254 153 62 chr9 28567600 28567985 -89294642 - MLT1K LTR MaLR -4 584 165 1590 197 7 7 chr9 28568087 28568381 -89294246 - AluJo SINE Alu -18 294 1 331 258 196 6 chr9 28568382 28568545 -89294082 + MIR SINE MIR 69 262 0 2494 53 0 13 chr9 28569569 28569873 -89292754 + AluY SINE Alu 1 300 -11 318 336 136 30 chr9 28569977 28570150 -89292477 + L2 LINE L2 2138 2291 -1023 2156 104 14 0 chr9 28570150 28570437 -89292190 + AluSg SINE Alu 1 291 -19 318 336 136 30 chr9 28570437 28571004 -89291623 + L2 LINE L2 2291 2957 -357 2023 157 0 0 chr9 28571211 28571516 -89291111 - AluJb SINE Alu -7 305 1 334 312 60 6 chr9 28571672 28571866 -89290761 + L2 LINE L2 3134 3305 -8 297 139 0 0 chr9 28572082 28572125 -89290502 + MADE1 DNA Mariner 1 43 -37 2257 117 0 0 chr9 28572143 28572442 -89290185 - AluSg SINE Alu -11 299 1 2007 123 7 0 chr9 28573120 28573418 -89289209 - AluSc SINE Alu 0 300 1 450 286 81 11 chr9 28573445 28573635 -89288992 - MIR SINE MIR -41 221 16 * 657 315 47 47 chr9 28573610 28574016 -89288611 - L3 LINE CR1 -453 1124 719 2357 84 3 3 chr9 28574529 28574828 -89287799 + AluSx SINE Alu 1 299 -13 24 32 0 0 chr9 28577042 28577073 -89285554 + AT_rich Low_complexity Low_complexity 1 31 0 222 128 0 0 chr9 28577453 28577492 -89285135 + (CTG)n Simple_repeat Simple_repeat 1 39 0 566 276 71 22 chr9 28578439 28578664 -89283963 + MIR SINE MIR 20 255 -7 2279 96 36 0 chr9 28578794 28579095 -89283532 + AluSx SINE Alu 1 312 0 685 262 7 0 chr9 28579542 28579691 -89282936 + MER82 DNA MER2_type 498 647 -6 389 379 127 19 chr9 28579706 28580068 -89282559 - L2 LINE L2 0 3272 2872 213 240 0 0 chr9 28580248 28580298 -89282329 + (TA)n Simple_repeat Simple_repeat 1 50 0 22 0 0 0 chr9 28580821 28580843 -89281784 + AT_rich Low_complexity Low_complexity 1 22 0 680 215 52 42 chr9 28580881 28581072 -89281555 - MER106A DNA MER1_type 0 236 44 234 0 0 0 chr9 28581080 28581106 -89281521 + (A)n Simple_repeat Simple_repeat 1 26 0 2154 67 7 7 chr9 28581106 28581413 -89281214 + AluY SINE Alu 1 307 0 2233 106 7 0 chr9 28581739 28582042 -89280585 - AluSx SINE Alu -7 305 1 2914 150 45 10 chr9 28582346 28582854 -89279773 + L1MB2 LINE L1 5643 6168 -3 1332 189 12 24 chr9 28583050 28583304 -89279323 - MER46C DNA MER2_type -1 337 87 2005 27 0 0 chr9 28583381 28583601 -89279026 - L1PA5 LINE L1 -9 6145 5926 867 142 213 64 chr9 28583843 28583911 -89278716 + MER33 DNA MER1_type 1 58 -2527 1828 155 0 7 chr9 28583911 28584223 -89278404 + AluJb SINE Alu 1 310 0 867 142 213 64 chr9 28584223 28584435 -89278192 + MER33 DNA MER1_type 58 324 0 587 105 23 0 chr9 28584653 28584739 -89277888 + MER67A LTR ERV1 1 88 -455 2408 203 93 48 chr9 28584741 28584993 -89277634 + MER67B LTR ERV1 14 253 -408 2418 146 67 15 chr9 28584993 28585397 -89277230 - MSTB LTR MaLR 0 426 2 2408 203 93 48 chr9 28585397 28585764 -89276863 + MER67B LTR ERV1 253 661 0 23 33 0 0 chr9 28585948 28585978 -89276649 + AT_rich Low_complexity Low_complexity 1 30 0 2299 90 3 0 chr9 28587087 28587377 -89275250 - AluSc SINE Alu -18 291 1 512 224 0 22 chr9 28588823 28588957 -89273670 + L1MA9 LINE L1 6157 6287 -25 642 193 0 0 chr9 28588971 28589085 -89273542 - AluSg/x SINE Alu -3 309 196 248 241 0 0 chr9 28589606 28589664 -89272963 - AluS SINE Alu -244 58 1 3043 191 111 14 chr9 28589664 28590287 -89272340 - L1M4c LINE L1 -5678 706 24 262 329 60 27 chr9 28590618 28590767 -89271860 - MLT1I LTR MaLR -255 154 1 219 331 70 14 chr9 28590970 28591102 -89271525 + L2 LINE L2 3163 3305 -8 1876 189 11 50 chr9 28591102 28591259 -89271368 + MLT1A1 LTR MaLR 1 163 -202 2316 105 3 0 chr9 28591259 28591563 -89271064 + AluSp SINE Alu 1 305 -8 1876 189 11 50 chr9 28591563 28591785 -89270842 + MLT1A1 LTR MaLR 163 365 0 684 254 39 93 chr9 28592654 28592933 -89269694 - MER102a DNA MER1_type -6 324 61 28 29 0 0 chr9 28593014 28593049 -89269578 + AT_rich Low_complexity Low_complexity 1 35 0 4617 178 116 6 chr9 28593053 28594051 -89268576 + L1MC3 LINE L1 6676 7783 -2 656 165 338 0 chr9 28594171 28594304 -89268323 - MER45A DNA AcHobo 0 178 1 192 242 84 151 chr9 28594831 28594863 -89267764 - MIR SINE MIR -67 141 108 1814 195 51 38 chr9 28594863 28595257 -89267370 + MER57A LTR ERV1 1 399 -4 192 242 84 151 chr9 28595257 28595351 -89267276 - MIR SINE MIR -100 108 38 622 262 160 39 chr9 28595653 28595935 -89266692 + MER102b DNA MER1_type 1 316 -25 272 365 17 0 chr9 28596479 28596594 -89266033 + Tigger8 DNA MER2_type 2 118 -548 608 211 77 0 chr9 28597022 28597178 -89265449 - L1ME4a LINE L1 -85 6036 5869 458 216 288 7 chr9 28597581 28597720 -89264907 - MER5B DNA MER1_type 0 178 1 930 227 11 5 chr9 28597729 28597914 -89264713 + MER5A DNA MER1_type 2 187 -2 578 247 57 25 chr9 28597982 28598140 -89264487 + MIR SINE MIR 26 188 -74 666 211 106 0 chr9 28598537 28598698 -89263929 - MER5A DNA MER1_type 0 189 12 446 258 47 12 chr9 28599054 28599220 -89263407 - MIR SINE MIR -48 214 44 289 257 69 83 chr9 28599859 28600003 -89262624 - MIR3 SINE MIR -64 144 3 474 247 53 27 chr9 28600030 28600180 -89262447 + L3 LINE CR1 1357 1510 -67 262 313 106 12 chr9 28600188 28600348 -89262279 - MER5B DNA MER1_type -3 175 1 546 260 90 19 chr9 28600430 28600639 -89261988 - MIR SINE MIR 0 262 36 2112 73 95 0 chr9 28601295 28601569 -89261058 - AluSc SINE Alu -9 300 1 256 235 0 0 chr9 28602266 28602317 -89260310 + MIR3 SINE MIR 151 201 -7 1696 176 3 7 chr9 28602682 28602966 -89259661 - AluJo SINE Alu -17 295 13 235 281 58 41 chr9 28603038 28603159 -89259468 + MIR SINE MIR 27 149 -113 180 0 0 0 chr9 28603750 28603770 -89258857 + (TA)n Simple_repeat Simple_repeat 2 21 0 470 266 165 32 chr9 28604137 28604355 -89258272 + MIR SINE MIR 16 262 0 430 276 35 9 chr9 28604996 28605112 -89257515 - MER103 DNA DNA -45 121 3 213 346 39 0 chr9 28605334 28605412 -89257215 + L3b LINE CR1 1476 1556 -27 248 282 51 26 chr9 28606336 28606414 -89256213 - L2 LINE L2 -10 3262 3183 297 280 95 52 chr9 28607127 28607368 -89255259 + MIR SINE MIR 3 262 0 584 268 108 21 chr9 28608412 28608606 -89254021 + MIR SINE MIR 46 256 -6 1179 211 14 9 chr9 28608950 28609163 -89253464 + MER20 DNA MER1_type 4 217 -2 1455 112 10 10 chr9 28609502 28609708 -89252919 - L1PB1 LINE L1 -3 6148 5943 852 295 135 50 chr9 28609720 28610168 -89252459 + L2 LINE L2 2332 2741 -572 1081 172 50 0 chr9 28610168 28610348 -89252279 + MER5A DNA MER1_type 1 189 0 852 295 135 50 chr9 28610348 28610800 -89251827 + L2 LINE L2 2741 3313 0 266 304 27 27 chr9 28610830 28610978 -89251649 - MER117 DNA MER1_type 0 197 50 32 0 0 0 chr9 28610978 28611010 -89251617 + AT_rich Low_complexity Low_complexity 1 32 0 206 105 26 0 chr9 28611087 28611125 -89251502 + (TA)n Simple_repeat Simple_repeat 2 40 0 1185 135 19 53 chr9 28611125 28611333 -89251294 - AluSg/x SINE Alu -27 285 85 901 143 0 0 chr9 28611401 28611534 -89251093 - FLAM_C SINE Alu 0 133 1 192 265 59 29 chr9 28611581 28611649 -89250978 - MIR SINE MIR -166 96 27 1816 161 92 18 chr9 28611753 28612089 -89250538 + MLT1A1 LTR MaLR 1 361 -4 504 271 39 19 chr9 28613077 28613232 -89249395 + MER5A DNA MER1_type 7 164 -25 374 226 29 20 chr9 28613769 28613871 -89248756 + MIR SINE MIR 54 156 -106 234 0 0 0 chr9 28614405 28614431 -89248196 + (TG)n Simple_repeat Simple_repeat 2 27 0 705 257 101 25 chr9 28614666 28614903 -89247724 - MIR SINE MIR -4 258 4 1354 173 47 11 chr9 28616199 28616477 -89246150 + L1MA8 LINE L1 6004 6291 0 407 303 104 26 chr9 28616757 28616988 -89245639 + MIR SINE MIR 2 250 -12 373 198 0 37 chr9 28617484 28617565 -89245062 + LTR67 LTR ERVL 478 555 -2 256 289 97 9 chr9 28617896 28618010 -89244617 - MIR3 SINE MIR -45 163 40 578 205 89 0 chr9 28618839 28618951 -89243676 - MER20 DNA MER1_type 0 219 98 340 310 29 58 chr9 28619394 28619568 -89243059 + MIR SINE MIR 86 254 -8 236 238 12 71 chr9 28619937 28620021 -89242606 + MER116 DNA Mariner 2 80 0 439 322 106 28 chr9 28620717 28621152 -89241475 + L2 LINE L2 2230 2698 -616 562 298 85 52 chr9 28621311 28621731 -89240896 + L2 LINE L2 2796 3227 -45 589 280 106 5 chr9 28623022 28623229 -89239398 + MIR SINE MIR 23 250 -12 469 287 47 13 chr9 28623306 28623456 -89239171 + L2 LINE L2 3159 3313 0 187 308 0 0 chr9 28623537 28623589 -89239038 + L2 LINE L2 3262 3313 0 810 134 0 17 chr9 28624551 28624670 -89237957 - AluSg SINE Alu 0 312 196 1072 114 0 0 chr9 28624671 28624811 -89237816 - AluSg SINE Alu -170 140 1 5616 145 23 45 chr9 28624822 28625377 -89237250 - L1MA4 LINE L1 -1 6299 5733 2178 128 3 6 chr9 28625377 28625690 -89236937 - AluSx SINE Alu 0 312 1 5616 145 23 45 chr9 28625690 28626129 -89236498 - L1MA4 LINE L1 -567 5733 5327 2450 100 0 0 chr9 28626129 28626439 -89236188 - AluSg SINE Alu 0 310 1 5616 145 23 45 chr9 28626439 28626689 -89235938 - L1MA4 LINE L1 -973 5327 5073 2819 157 52 10 chr9 28626657 28627867 -89234760 + L1MA4 LINE L1 3633 5083 -1063 * 2163 122 10 0 chr9 28627867 28628170 -89234457 - AluSq SINE Alu -7 306 1 2819 157 52 10 chr9 28628170 28628195 -89234432 + L1MB4 LINE L1 5083 5106 -1040 500 286 119 0 chr9 28629998 28630183 -89232444 - MIR SINE MIR -1 261 55 428 289 8 8 chr9 28630178 28630299 -89232328 - L2 LINE L2 0 3313 3193 * 4328 155 23 12 chr9 28630398 28631146 -89231481 + L1MB4 LINE L1 5425 6180 0 339 75 19 0 chr9 28631788 28631841 -89230786 - L1ME4a LINE L1 0 6121 6068 408 254 56 0 chr9 28631895 28632021 -89230606 - L1ME4a LINE L1 -206 5915 5783 217 196 0 36 chr9 28632674 28632714 -89229913 + GA-rich Low_complexity Low_complexity 2 41 -14 2006 132 40 3 chr9 28632714 28633039 -89229588 + L1MC2 LINE L1 5999 6335 -9 217 196 0 36 chr9 28633039 28633054 -89229573 + GA-rich Low_complexity Low_complexity 41 55 0 205 243 0 0 chr9 28633572 28633609 -89229018 + polypyrimidine Low_complexity Low_complexity 4 40 0 434 311 105 38 chr9 28634548 28634892 -89227735 - L2 LINE L2 -583 2731 2365 2305 83 30 7 chr9 28635893 28636194 -89226433 - AluSx SINE Alu -4 308 1 463 238 19 44 chr9 28636344 28636504 -89226123 + L1MD3 LINE L1 7826 7981 -14 1634 161 76 17 chr9 28637578 28637869 -89224758 - AluJo SINE Alu -4 308 1 2401 67 0 3 chr9 28638115 28638441 -89224186 + AluY SINE Alu 1 325 0 253 241 253 0 chr9 28638711 28638790 -89223837 - MIR SINE MIR -3 259 161 1971 96 6 93 chr9 28638814 28639146 -89223481 + AluSx SINE Alu 1 303 -9 8812 182 19 4 chr9 28639149 28641489 -89221138 + L1PB1 LINE L1 3414 5791 -360 432 0 0 0 chr9 28641582 28641630 -89220997 + (TA)n Simple_repeat Simple_repeat 2 49 0 2431 138 0 0 chr9 28641630 28641986 -89220641 + L1PB1 LINE L1 5796 6151 0 2316 88 0 3 chr9 28642130 28642425 -89220202 - AluSq SINE Alu -19 294 1 1116 266 117 39 chr9 28642504 28643125 -89219502 + L2 LINE L2 2634 3313 0 206 174 43 22 chr9 28644133 28644179 -89218448 - L2 LINE L2 -5 3267 3221 274 262 0 0 chr9 28644187 28644248 -89218379 + MIR SINE MIR 85 145 -63 1038 237 40 16 chr9 28644848 28645097 -89217530 - MIR SINE MIR -7 255 1 2401 70 10 0 chr9 28646129 28646428 -89216199 + AluSp SINE Alu 3 304 -9 944 201 21 16 chr9 28646454 28646648 -89215979 - MER46C DNA MER2_type -29 309 115 543 256 156 15 chr9 28647062 28647261 -89215366 - MIR SINE MIR -18 244 18 298 297 117 0 chr9 28649156 28649267 -89213360 - L2 LINE L2 0 3272 3149 445 246 157 15 chr9 28649273 28649407 -89213220 - MER5A DNA MER1_type -2 187 35 225 318 84 9 chr9 28649487 28649594 -89213033 - L2 LINE L2 -243 3029 2915 186 301 48 39 chr9 28653475 28653578 -89209049 + L2 LINE L2 3164 3267 -5 212 321 0 0 chr9 28653660 28653713 -89208914 - L3b LINE CR1 -9 1574 1522 30 59 0 0 chr9 28654250 28654301 -89208326 + AT_rich Low_complexity Low_complexity 1 51 0 791 285 182 27 chr9 28655250 28655886 -89206741 + L2 LINE L2 1901 2635 -679 1926 204 90 51 chr9 28655886 28656081 -89206546 + MER34C LTR ERV1 1 187 -398 375 23 0 0 chr9 28656081 28656125 -89206502 + (TC)n Simple_repeat Simple_repeat 1 44 0 1926 204 90 51 chr9 28656125 28656482 -89206145 + MER34C LTR ERV1 187 575 -10 523 317 91 43 chr9 28656495 28656617 -89206010 + L2 LINE L2 2643 2758 -555 2072 126 0 3 chr9 28656617 28656934 -89205693 - AluSq SINE Alu 0 316 1 523 317 91 43 chr9 28656934 28657196 -89205431 + L2 LINE L2 2758 3045 -268 356 259 80 0 chr9 28657311 28657423 -89205204 - L2 LINE L2 0 3313 3193 277 321 43 62 chr9 28657402 28657564 -89205063 + L2 LINE L2 3107 3265 -7 * 404 305 50 93 chr9 28657757 28658302 -89204325 - L2 LINE L2 -134 3179 2661 218 246 210 29 chr9 28660099 28660237 -89202390 - MIR SINE MIR 0 262 100 212 83 0 28 chr9 28660421 28660457 -89202170 + (CATA)n Simple_repeat Simple_repeat 4 38 0 228 250 44 0 chr9 28660869 28660937 -89201690 + MIR SINE MIR 74 144 -118 1871 141 17 14 chr9 28661890 28662180 -89200447 - MER1B DNA MER1_type 0 339 49 * 3766 148 45 7 chr9 28662172 28662774 -89199853 - Tigger7 DNA MER2_type -107 626 2 1904 175 65 20 chr9 28662923 28663324 -89199303 + Charlie1 DNA MER1_type 2343 2761 0 275 212 35 12 chr9 28663375 28663460 -89199167 + L2 LINE L2 3108 3194 -119 350 219 170 81 chr9 28663469 28663878 -89198749 + LTR33A LTR ERVL 1 509 -14 1044 167 44 0 chr9 28664041 28664221 -89198406 - MER5A DNA MER1_type -1 188 1 232 219 61 49 chr9 28664949 28665031 -89197596 - MER117 DNA MER1_type -16 181 99 467 133 0 12 chr9 28665152 28665235 -89197392 + (GAAA)n Simple_repeat Simple_repeat 2 83 0 1076 121 6 0 chr9 28665235 28665408 -89197219 + (GGAA)n Simple_repeat Simple_repeat 3 176 0 526 272 108 24 chr9 28665743 28665956 -89196671 + MIR SINE MIR 31 261 -1 484 274 48 67 chr9 28666254 28666462 -89196165 - MIR SINE MIR -8 254 51 428 293 133 16 chr9 28667735 28667923 -89194704 - MIR SINE MIR -6 256 47 732 246 127 31 chr9 28669214 28669391 -89193236 + MIR SINE MIR 13 218 -44 2351 114 42 33 chr9 28669391 28669752 -89192875 - THE1B LTR MaLR 0 364 1 732 246 127 31 chr9 28669752 28669802 -89192825 + MIR SINE MIR 218 262 0 449 242 142 64 chr9 28670431 28670650 -89191977 - MIR SINE MIR -4 258 23 2069 129 0 16 chr9 28670766 28671077 -89191550 + AluSx SINE Alu 1 306 -6 232 301 269 0 chr9 28671337 28671430 -89191197 + L2 LINE L2 3196 3313 0 198 0 0 0 chr9 28671625 28671647 -89190980 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 403 318 76 42 chr9 28671758 28671994 -89190633 + MIR SINE MIR 8 251 -11 375 89 0 0 chr9 28673251 28673307 -89189320 + (TCCA)n Simple_repeat Simple_repeat 1 56 0 231 357 63 16 chr9 28673400 28673526 -89189101 - L2 LINE L2 -223 3049 2918 623 122 70 0 chr9 28673601 28673716 -89188911 + L1MA8 LINE L1 5270 5392 -899 * 1933 132 12 35 chr9 28673706 28674048 -89188579 + L1MA8 LINE L1 5759 6092 -199 282 331 0 44 chr9 28674051 28674187 -89188440 + MER5A DNA MER1_type 55 184 -5 599 158 211 0 chr9 28674253 28674386 -89188241 - MER103 DNA DNA -1 165 5 393 229 0 12 chr9 28675375 28675458 -89187169 - L2 LINE L2 0 3313 3232 271 284 15 0 chr9 28675975 28676042 -89186585 - MER113 DNA MER1_type? 0 521 454 222 184 0 0 chr9 28677425 28677463 -89185164 + GA-rich Low_complexity Low_complexity 1 38 0 257 248 53 121 chr9 28677504 28677710 -89184917 + MLT1K LTR MaLR 392 583 -5 1160 164 34 29 chr9 28677783 28677991 -89184636 + MER3 DNA MER1_type 1 209 0 324 308 26 43 chr9 28678104 28678221 -89184406 - MIR3 SINE MIR -84 124 10 23 0 0 0 chr9 28679507 28679530 -89183097 + AT_rich Low_complexity Low_complexity 1 23 0 334 222 0 0 chr9 28679607 28679670 -89182957 + AluJb SINE Alu 183 245 -57 1178 171 9 32 chr9 28679670 28679887 -89182740 - AluJb SINE Alu -57 255 44 247 150 0 0 chr9 28679920 28679960 -89182667 - MIR SINE MIR -111 151 112 251 283 0 0 chr9 28680399 28680459 -89182168 - MER5A DNA MER1_type -126 63 4 297 216 0 0 chr9 28680478 28680529 -89182098 + MER5A DNA MER1_type 52 102 -87 198 0 0 0 chr9 28680951 28680973 -89181654 + (A)n Simple_repeat Simple_repeat 1 22 0 422 336 34 0 chr9 28681074 28681193 -89181434 - L2 LINE L2 -1 3271 3149 220 216 20 0 chr9 28681876 28681927 -89180700 + L2 LINE L2 3221 3272 0 440 250 63 28 chr9 28684326 28684472 -89178155 - MIR SINE MIR -68 140 34 354 240 55 115 chr9 28684638 28684753 -89177874 + MIR SINE MIR 25 125 -137 1931 156 17 3 chr9 28684753 28685054 -89177573 + AluJb SINE Alu 1 305 -7 354 240 55 115 chr9 28685054 28685138 -89177489 + MIR SINE MIR 125 212 -50 2987 82 0 0 chr9 28685712 28686067 -89176560 - THE1A LTR MaLR 0 355 1 12525 83 19 0 chr9 28686067 28687618 -89175009 - THE1A-int LTR MaLR 0 1580 1 2913 84 3 3 chr9 28687618 28687973 -89174654 - THE1A LTR MaLR 0 355 1 372 262 95 42 chr9 28688280 28688448 -89174179 + MIR SINE MIR 31 207 -55 300 381 101 0 chr9 28689649 28689788 -89172839 + L2 LINE L2 3107 3259 -13 840 141 7 7 chr9 28690206 28690341 -89172286 - AluJo SINE Alu -177 135 1 295 322 51 79 chr9 28690629 28690806 -89171821 - MIR3 SINE MIR -25 183 12 1501 171 29 44 chr9 28690878 28691010 -89171617 + AluJo SINE Alu 2 135 -177 180 0 0 0 chr9 28691010 28691030 -89171597 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1501 171 29 44 chr9 28691030 28691212 -89171415 + AluJo SINE Alu 135 311 -1 31 0 0 0 chr9 28691349 28691380 -89171247 + AT_rich Low_complexity Low_complexity 1 31 0 532 294 38 55 chr9 28692543 28692781 -89169846 + MIR SINE MIR 4 237 -25 243 0 0 0 chr9 28693752 28693779 -89168848 + (A)n Simple_repeat Simple_repeat 1 27 0 720 165 41 17 chr9 28694921 28695197 -89167430 + MLT1A1 LTR MaLR 36 365 0 326 310 122 13 chr9 28695849 28695958 -89166669 + L1ME4a LINE L1 5563 5659 -462 1891 220 97 36 chr9 28695958 28696516 -89166111 + MLT1E LTR MaLR 2 593 0 326 310 122 13 chr9 28696516 28696709 -89165918 + L1ME4a LINE L1 5659 5898 -223 1179 277 32 19 chr9 28696875 28697254 -89165373 + L2 LINE L2 2552 2935 -379 2482 181 11 19 chr9 28697254 28697719 -89164908 - MLT1C LTR MaLR 0 467 7 236 196 0 0 chr9 28697729 28697775 -89164852 + L2 LINE L2 2933 2978 -335 981 320 24 11 chr9 28697775 28698147 -89164480 + LTR16B LTR ERVL 1 377 -87 562 229 41 8 chr9 28698154 28698276 -89164351 + MER45A DNA AcHobo 33 158 -20 367 218 0 35 chr9 28698276 28698363 -89164264 + LTR16B LTR ERVL 380 463 -1 881 260 88 22 chr9 28698363 28698682 -89163945 + L2 LINE L2 2974 3313 0 562 285 65 39 chr9 28698806 28699876 -89162751 + L1MEd LINE L1 232 1342 -4863 387 0 0 0 chr9 28699883 28699926 -89162701 + (CA)n Simple_repeat Simple_repeat 2 44 0 380 335 28 14 chr9 28699931 28700146 -89162481 + HAL1 LINE L1 1406 1623 -884 1825 165 73 52 chr9 28700146 28700527 -89162100 - MSTD LTR MaLR 0 396 8 1639 169 0 15 chr9 28700882 28701148 -89161479 + AluJo SINE Alu 37 298 -14 1761 95 88 33 chr9 28701229 28701375 -89161252 - AluSc SINE Alu -16 293 156 2469 67 0 3 chr9 28701375 28701672 -89160955 - AluY SINE Alu -15 296 1 1761 95 88 33 chr9 28701672 28701798 -89160829 - AluSc SINE Alu -153 156 6 232 352 38 23 chr9 28702126 28702390 -89160237 + L1MEd LINE L1 2023 2290 -4106 282 243 29 0 chr9 28702391 28702461 -89160166 - Charlie8 DNA MER1_type -4 2413 2342 * 383 303 68 68 chr9 28702455 28702578 -89160049 - Charlie8 DNA MER1_type -2093 324 202 2571 56 0 25 chr9 28702578 28702897 -89159730 - AluY SINE Alu 0 311 1 383 303 68 68 chr9 28702897 28703037 -89159590 - Charlie8 DNA MER1_type -2214 203 61 2646 52 0 0 chr9 28704198 28704504 -89158123 - AluY SINE Alu -5 306 1 21 0 0 0 chr9 28704561 28704582 -89158045 + AT_rich Low_complexity Low_complexity 1 21 0 606 158 135 8 chr9 28706239 28706372 -89156255 - MIR SINE MIR -56 206 57 235 279 189 49 chr9 28706378 28706500 -89156127 - MIR3 SINE MIR -63 145 7 546 271 131 54 chr9 28707013 28707364 -89155263 - L2 LINE L2 -4 3309 2932 2037 144 0 0 chr9 28707921 28708240 -89154387 + AluSx SINE Alu 1 319 0 432 248 8 32 chr9 28708290 28708415 -89154212 + LTR40a LTR ERVL 79 200 -319 767 236 44 35 chr9 28708470 28708673 -89153954 + LTR40a LTR ERVL 197 401 -118 2213 124 0 0 chr9 28709473 28709780 -89152847 - AluSx SINE Alu -5 307 1 222 275 100 0 chr9 28711197 28711277 -89151350 - MIR3 SINE MIR -6 202 115 668 309 50 89 chr9 28711281 28711741 -89150886 - L2 LINE L2 -5 3267 2826 251 310 40 20 chr9 28711726 28711826 -89150801 - MIR SINE MIR -86 122 21 * 2417 77 3 0 chr9 28712664 28712964 -89149663 + AluY SINE Alu 1 301 -10 487 280 68 38 chr9 28713893 28714129 -89148498 + MIR SINE MIR 20 262 0 330 107 0 36 chr9 28714205 28714261 -89148366 - AluSg SINE Alu 0 302 249 9253 57 2 8 chr9 28714261 28714430 -89148197 + MER11C LTR ERVK 1 170 -901 2354 82 0 3 chr9 28714430 28714724 -89147903 + AluY SINE Alu 1 293 -18 9253 57 2 8 chr9 28714724 28715632 -89146995 + MER11C LTR ERVK 170 1071 0 1948 107 0 0 chr9 28715632 28715884 -89146743 - AluSg SINE Alu -58 252 1 294 263 281 0 chr9 28715961 28716075 -89146552 - MER5A DNA MER1_type -35 154 9 1732 170 7 7 chr9 28716119 28716456 -89146171 + AluJb SINE Alu 1 337 0 192 266 172 0 chr9 28716547 28716611 -89146016 + L2 LINE L2 3104 3178 -94 286 273 125 39 chr9 28718283 28718594 -89144033 + L1ME4a LINE L1 5612 5949 -172 301 245 91 42 chr9 28718596 28718739 -89143888 + L1ME4a LINE L1 5972 6121 0 587 311 54 5 chr9 28719788 28720010 -89142617 - Charlie8 DNA MER1_type -2166 251 19 6390 59 1 3 chr9 28721425 28722735 -89139892 + L1PA6 LINE L1 4747 6055 -99 836 126 0 0 chr9 28722735 28722854 -89139773 + AluSg/x SINE Alu 178 296 -14 367 230 0 11 chr9 28723726 28723813 -89138814 - MER117 DNA MER1_type -106 91 6 804 293 99 28 chr9 28724759 28725151 -89137476 + LTR16A LTR ERVL 23 442 -8 1084 188 104 21 chr9 28725362 28725602 -89137025 + Tigger6 DNA MER2_type 4 263 -820 2316 185 135 0 chr9 28725809 28726252 -89136375 - MLT1D LTR MaLR -2 503 1 613 234 15 0 chr9 28726487 28726624 -89136003 - MER103 DNA DNA -15 151 13 221 316 41 31 chr9 28727251 28727349 -89135278 - L3 LINE CR1 -4 1573 1475 254 256 0 70 chr9 28727523 28727609 -89135018 - MIR SINE MIR -1 261 182 2402 64 3 3 chr9 28727609 28727904 -89134723 - AluY SINE Alu -16 295 1 1052 92 0 0 chr9 28727922 28728053 -89134574 - AluSg1 SINE Alu -178 131 1 373 273 117 42 chr9 28728150 28728334 -89134293 - MIR SINE MIR -26 236 42 271 271 29 0 chr9 28728796 28728866 -89133761 + L2 LINE L2 3240 3311 -2 21 57 0 0 chr9 28729648 28729683 -89132944 + AT_rich Low_complexity Low_complexity 1 35 0 196 243 257 0 chr9 28729885 28729959 -89132668 - MIR SINE MIR -76 132 40 253 169 15 15 chr9 28730340 28730405 -89132222 + GA-rich Low_complexity Low_complexity 4 68 0 2163 129 0 0 chr9 28730483 28730786 -89131841 - AluSx SINE Alu -9 303 1 2234 101 3 16 chr9 28730788 28731094 -89131533 - AluSx SINE Alu -10 302 1 259 289 61 18 chr9 28732384 28732498 -89130129 + MIR SINE MIR 83 201 -61 939 262 62 39 chr9 28732938 28733354 -89129273 + MLT1J2 LTR MaLR 6 431 -19 22 0 0 0 chr9 28733401 28733423 -89129204 + AT_rich Low_complexity Low_complexity 1 22 0 792 320 69 13 chr9 28734327 28734809 -89127818 + L2 LINE L2 2554 3066 -247 545 94 12 0 chr9 28734932 28735017 -89127610 + (TGGA)n Simple_repeat Simple_repeat 3 88 0 207 0 0 0 chr9 28735414 28735437 -89127190 + (A)n Simple_repeat Simple_repeat 1 23 0 474 290 93 23 chr9 28736439 28736653 -89125974 + MIR SINE MIR 34 262 0 1506 228 43 39 chr9 28736885 28737350 -89125277 + MLT1C LTR MaLR 1 467 0 500 339 74 41 chr9 28737734 28738247 -89124380 + L2 LINE L2 2079 2608 -706 231 333 0 0 chr9 28738291 28738351 -89124276 + L2 LINE L2 3174 3233 -39 2466 79 13 0 chr9 28738439 28738742 -89123885 + AluSx SINE Alu 1 307 -5 276 291 152 0 chr9 28738818 28738897 -89123730 - L2 LINE L2 0 3272 3182 344 172 0 0 chr9 28740286 28740344 -89122283 - L2 LINE L2 0 3313 3256 187 355 72 26 chr9 28740612 28740764 -89121863 - L2 LINE L2 -75 3197 3039 472 126 137 0 chr9 28741904 28741999 -89120628 + MER53 DNA DNA 1 108 -81 189 0 0 0 chr9 28742757 28742778 -89119849 + (TG)n Simple_repeat Simple_repeat 2 22 0 2333 93 0 3 chr9 28743029 28743339 -89119288 + AluSc SINE Alu 1 309 0 24 0 0 0 chr9 28743397 28743421 -89119206 + AT_rich Low_complexity Low_complexity 1 24 0 264 100 0 0 chr9 28743489 28743529 -89119098 + (TA)n Simple_repeat Simple_repeat 2 41 0 550 305 110 8 chr9 28743530 28743903 -89118724 - L1ME4a LINE L1 -193 5928 5511 26 0 0 0 chr9 28743977 28744003 -89118624 + AT_rich Low_complexity Low_complexity 1 26 0 246 62 0 0 chr9 28744533 28744565 -89118062 + (GAAAA)n Simple_repeat Simple_repeat 4 35 0 213 39 0 0 chr9 28745017 28745043 -89117584 + (TGAG)n Simple_repeat Simple_repeat 1 26 0 189 0 0 0 chr9 28745219 28745240 -89117387 + (A)n Simple_repeat Simple_repeat 1 21 0 301 239 0 15 chr9 28746630 28746697 -89115930 + L3 LINE CR1 1510 1575 -2 319 296 100 29 chr9 28747789 28748100 -89114527 + L1ME4a LINE L1 5329 5661 -460 291 243 64 81 chr9 28751220 28751419 -89111208 + MIR SINE MIR 12 212 -50 381 242 158 8 chr9 28751982 28752102 -89110525 + MIR SINE MIR 105 242 -20 208 138 0 35 chr9 28753034 28753092 -89109535 + (TA)n Simple_repeat Simple_repeat 1 56 0 610 110 55 0 chr9 28753578 28753669 -89108958 + FRAM SINE Alu 69 164 -12 279 268 24 0 chr9 28754803 28754885 -89107742 + CT-rich Low_complexity Low_complexity 4 87 0 306 148 0 0 chr9 28755671 28755725 -89106902 + (GGAA)n Simple_repeat Simple_repeat 4 57 0 334 179 0 113 chr9 28756130 28756236 -89106391 + MLT1F1 LTR MaLR 474 567 0 232 159 0 23 chr9 28756259 28756303 -89106324 + MIR SINE MIR 212 254 -8 292 234 102 91 chr9 28756333 28756607 -89106020 + L1ME4a LINE L1 5744 6020 -101 506 246 47 23 chr9 28757381 28757552 -89105075 + MLT1K LTR MaLR 397 571 -17 21 0 0 0 chr9 28757725 28757746 -89104881 + AT_rich Low_complexity Low_complexity 1 21 0 474 293 23 8 chr9 28757871 28758004 -89104623 - MIR SINE MIR -6 256 122 390 241 85 47 chr9 28758381 28758593 -89104034 + LTR16C LTR ERVL 266 485 -6 36 40 0 0 chr9 28758794 28758844 -89103783 + AT_rich Low_complexity Low_complexity 1 50 0 694 231 63 80 chr9 28759111 28759142 -89103485 - MLT1I LTR MaLR -18 391 361 2102 189 110 23 chr9 28759142 28759613 -89103014 + MLT2B2 LTR ERVL 1 512 -3 694 231 63 80 chr9 28759613 28759880 -89102747 - MLT1I LTR MaLR -48 361 98 392 231 224 8 chr9 28759971 28760105 -89102522 + MIR SINE MIR 91 253 -9 217 385 42 30 chr9 28760115 28760281 -89102346 - L3b LINE CR1 -311 1272 1105 520 264 90 14 chr9 28761799 28761943 -89100684 - L2 LINE L2 0 3272 3118 277 195 230 11 chr9 28762017 28762104 -89100523 - L2 LINE L2 -8 3305 3200 345 325 109 39 chr9 28762128 28762410 -89100217 - L2 LINE L2 -216 3056 2732 2430 68 0 0 chr9 28762410 28762702 -89099925 - AluY SINE Alu -19 292 1 345 325 109 39 chr9 28762702 28762902 -89099725 - L2 LINE L2 -540 2732 2547 909 274 9 14 chr9 28763174 28763397 -89099230 - MIR SINE MIR -8 254 33 22 0 0 0 chr9 28764173 28764195 -89098432 + AT_rich Low_complexity Low_complexity 1 22 0 405 294 119 0 chr9 28764202 28764328 -89098299 - L2 LINE L2 -3 3269 3129 246 319 109 14 chr9 28764407 28764545 -89098082 - L2 LINE L2 -523 2791 2641 2364 214 35 24 chr9 28764673 28764992 -89097635 - L1MEc LINE L1 -3286 2929 2615 2245 60 53 3 chr9 28764992 28765276 -89097351 + AluY SINE Alu 1 298 -13 2364 214 35 24 chr9 28765276 28765635 -89096992 - L1MEc LINE L1 -3600 2615 2243 1608 132 42 100 chr9 28765640 28766050 -89096577 - L1MA8 LINE L1 -3 6288 5903 233 167 0 0 chr9 28766049 28766097 -89096530 - L1MEc LINE L1 -4094 2302 2255 * 465 187 98 0 chr9 28766087 28766499 -89096128 + L1MEc LINE L1 1833 2318 -4078 259 228 281 24 chr9 28766499 28766666 -89095961 - MIR SINE MIR -13 249 40 507 244 96 0 chr9 28766783 28766918 -89095709 + MIR SINE MIR 43 190 -72 35 83 0 0 chr9 28767321 28767405 -89095222 + AT_rich Low_complexity Low_complexity 1 84 0 23 0 0 0 chr9 28768049 28768072 -89094555 + AT_rich Low_complexity Low_complexity 1 23 0 231 36 0 0 chr9 28769503 28769531 -89093096 + (A)n Simple_repeat Simple_repeat 1 28 0 2266 100 3 0 chr9 28769915 28770206 -89092421 - AluSc SINE Alu -15 294 3 31 26 0 0 chr9 28771055 28771093 -89091534 + AT_rich Low_complexity Low_complexity 1 38 0 340 233 27 33 chr9 28771190 28771340 -89091287 + (TA)n Simple_repeat Simple_repeat 1 149 0 207 229 0 0 chr9 28772394 28772429 -89090198 + L2 LINE L2 3211 3245 -27 4172 181 48 24 chr9 28772889 28773418 -89089209 - L1P LINE L1 -1638 4508 3945 1845 162 0 26 chr9 28773418 28773720 -89088907 - AluJb SINE Alu -18 294 1 4172 181 48 24 chr9 28773720 28774125 -89088502 - L1P LINE L1 -2201 3945 3551 5156 110 81 1 chr9 28774125 28775714 -89086913 + L1PA15 LINE L1 4483 6162 -3 24 32 0 0 chr9 28775752 28775783 -89086844 + AT_rich Low_complexity Low_complexity 1 31 0 186 194 28 0 chr9 28776579 28776615 -89086012 - L2 LINE L2 -16 3256 3220 1623 181 10 17 chr9 28776623 28776922 -89085705 - AluJo SINE Alu -10 302 6 22 0 0 0 chr9 28777110 28777132 -89085495 + AT_rich Low_complexity Low_complexity 1 22 0 333 303 92 9 chr9 28777287 28777396 -89085231 + L2 LINE L2 3151 3268 -4 435 317 104 5 chr9 28777939 28778333 -89084294 + L1ME4a LINE L1 5616 6048 -73 21 0 0 0 chr9 28778870 28778891 -89083736 + AT_rich Low_complexity Low_complexity 1 21 0 34 65 0 0 chr9 28779093 28779155 -89083472 + AT_rich Low_complexity Low_complexity 1 62 0 396 174 188 49 chr9 28779845 28779989 -89082638 + MER103 DNA DNA 3 166 0 297 289 0 0 chr9 28781614 28781690 -89080937 - MIR SINE MIR -46 162 86 244 275 43 0 chr9 28781928 28781997 -89080630 + MIR SINE MIR 188 259 -3 847 234 106 18 chr9 28782037 28782263 -89080364 - MIR SINE MIR -15 247 2 23 54 0 0 chr9 28783356 28783393 -89079234 + AT_rich Low_complexity Low_complexity 1 37 0 1681 128 8 0 chr9 28783724 28783967 -89078660 - AluSq SINE Alu 0 313 69 207 0 0 0 chr9 28785220 28785243 -89077384 + (A)n Simple_repeat Simple_repeat 1 23 0 227 307 79 40 chr9 28787249 28787350 -89075277 - MIR3 SINE MIR -19 189 85 195 128 51 26 chr9 28788375 28788414 -89074213 + L2 LINE L2 3227 3266 -6 1732 176 79 29 chr9 28788667 28789110 -89073517 + MLT1C LTR MaLR 3 467 0 189 0 0 0 chr9 28789150 28789171 -89073456 + (A)n Simple_repeat Simple_repeat 1 21 0 5188 129 85 18 chr9 28789633 28790734 -89071893 + Tigger3b DNA MER2_type 1 1198 -33 2024 101 7 23 chr9 28791647 28791981 -89070646 + AluSx SINE Alu 1 312 0 1764 167 14 0 chr9 28792526 28792807 -89069820 - AluJo SINE Alu -17 295 11 234 0 0 0 chr9 28794274 28794300 -89068327 + (CCG)n Simple_repeat Simple_repeat 1 26 0 326 197 15 53 chr9 28794480 28794612 -89068015 + C-rich Low_complexity Low_complexity 3 129 0 190 244 0 0 chr9 28795126 28795171 -89067456 + L2 LINE L2 3264 3308 -5 2193 177 42 11 chr9 28795738 28796185 -89066442 + MER65C LTR ERV1 1 461 0 458 236 109 6 chr9 28796235 28796400 -89066227 + L1MA9 LINE L1 5917 6098 -214 2068 149 83 5 chr9 28796400 28796797 -89065830 - MSTA LTR MaLR 0 428 1 4740 186 35 12 chr9 28796803 28797618 -89065009 - MSTA-int LTR MaLR -6 1645 803 3696 185 37 4 chr9 28797618 28798327 -89064300 - MER50 LTR ERV1 -2 732 1 4740 186 35 12 chr9 28798327 28798483 -89064144 - MSTA-int LTR MaLR -848 803 652 5054 25 3 0 chr9 28798485 28799139 -89063488 + L1PA3 LINE L1 5519 6174 0 3499 164 31 0 chr9 28799149 28799783 -89062844 - MSTA-int LTR MaLR -997 654 1 2527 118 51 17 chr9 28799783 28800197 -89062430 - MSTA LTR MaLR 0 428 1 734 189 55 0 chr9 28800198 28800362 -89062265 + L1MA9 LINE L1 6103 6275 -37 323 244 25 109 chr9 28800373 28800492 -89062135 - MIR SINE MIR -72 190 82 604 281 67 14 chr9 28801396 28801606 -89061021 + MIR SINE MIR 2 222 -40 2215 102 37 0 chr9 28801970 28802264 -89060363 - AluSp SINE Alu -6 307 3 1990 136 30 13 chr9 28802549 28802851 -89059776 + AluSx SINE Alu 1 307 -5 304 311 84 21 chr9 28803799 28804107 -89058520 + L2 LINE L2 2709 3068 -204 595 280 165 9 chr9 28804254 28804472 -89058155 + MIR SINE MIR 11 262 0 181 195 24 0 chr9 28804474 28804515 -89058112 + L2 LINE L2 3272 3313 0 315 309 41 0 chr9 28804517 28804614 -89058013 - MIR SINE MIR -55 153 53 282 333 39 31 chr9 28804669 28804798 -89057829 + L2 LINE L2 3127 3256 -16 22 56 0 0 chr9 28805880 28805916 -89056711 + AT_rich Low_complexity Low_complexity 1 36 0 1972 141 7 20 chr9 28806397 28806694 -89055933 - AluSx SINE Alu -12 300 8 2168 177 2 8 chr9 28807709 28808105 -89054522 + MER57A LTR ERV1 1 394 -9 1762 126 21 37 chr9 28808111 28808436 -89054191 - L1MA3 LINE L1 -8 6297 5978 1467 125 12 0 chr9 28808436 28808734 -89053893 + L1M1 LINE L1 5211 5511 -743 180 260 80 0 chr9 28808976 28809026 -89053601 + L2 LINE L2 3208 3261 -11 35 88 0 0 chr9 28809117 28809208 -89053419 + AT_rich Low_complexity Low_complexity 1 91 0 969 258 75 73 chr9 28809260 28809462 -89053165 - L1MC4a LINE L1 -1773 6035 5835 2233 44 34 27 chr9 28809462 28809756 -89052871 - AluY SINE Alu -15 296 1 969 258 75 73 chr9 28809756 28810211 -89052416 - L1MC4a LINE L1 -1973 5835 5377 726 310 20 27 chr9 28810220 28810627 -89052000 + L1PA16 LINE L1 10 413 -7168 13038 224 39 10 chr9 28811177 28816400 -89046227 + L1PA16 LINE L1 2224 7588 -16 200 216 69 147 chr9 28816534 28816636 -89045991 + L2 LINE L2 3165 3258 -55 * 222 313 47 31 chr9 28816635 28816763 -89045864 - L2 LINE L2 -820 2494 2365 1938 168 93 20 chr9 28816776 28817228 -89045399 + MER52A LTR ERV1 1271 1755 0 1292 195 200 26 chr9 28817303 28817733 -89044894 - MLT1D LTR MaLR 0 505 1 649 227 38 76 chr9 28818563 28818801 -89043826 - L1ME3A LINE L1 -18 6152 5924 452 224 0 22 chr9 28819797 28819931 -89042696 + L1MA9 LINE L1 6157 6287 -25 768 87 9 9 chr9 28819945 28820060 -89042567 - AluSg/x SINE Alu -2 308 194 340 184 37 18 chr9 28820561 28820670 -89041957 + MER113 DNA MER1_type? 90 200 -321 413 339 0 8 chr9 28820690 28820817 -89041810 + MIR3 SINE MIR 8 133 -75 216 0 0 0 chr9 28820817 28820841 -89041786 + (A)n Simple_repeat Simple_repeat 1 24 0 248 268 12 0 chr9 28820951 28821033 -89041594 + MER117 DNA MER1_type 6 88 -109 599 186 215 0 chr9 28823039 28823296 -89039331 - MER33 DNA MER1_type -4 359 6 1409 234 45 28 chr9 28824146 28824608 -89038019 + LTR38 LTR ERV1 87 556 0 28 29 0 0 chr9 28824864 28824899 -89037728 + AT_rich Low_complexity Low_complexity 1 35 0 447 231 60 0 chr9 28825547 28825681 -89036946 + MER5C DNA MER1_type 128 269 -55 358 331 49 22 chr9 28825986 28826170 -89036457 + MER5A DNA MER1_type 1 189 0 449 291 120 20 chr9 28826444 28826743 -89035884 - MLT1J2 LTR MaLR -121 329 1 2468 57 3 0 chr9 28828140 28828439 -89034188 - AluY SINE Alu -11 300 1 241 270 54 34 chr9 28828880 28829028 -89033599 + L1ME LINE L1 5648 5798 -323 25 51 0 0 chr9 28829040 28829079 -89033548 + AT_rich Low_complexity Low_complexity 1 39 0 2203 104 0 0 chr9 28832032 28832320 -89030307 - L1PA7 LINE L1 -6 6148 5861 20895 119 20 87 chr9 28832320 28836433 -89026194 - L1P LINE L1 -2298 3848 12 1599 142 22 18 chr9 28836447 28836721 -89025906 - AluJb SINE Alu -13 299 25 21 36 0 0 chr9 28836743 28836771 -89025856 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr9 28837193 28837214 -89025413 + AT_rich Low_complexity Low_complexity 1 21 0 195 298 77 58 chr9 28838016 28838120 -89024507 - L2 LINE L2 0 3313 3208 465 285 69 0 chr9 28838270 28838414 -89024213 - L2 LINE L2 0 3272 3119 1358 199 17 14 chr9 28838456 28838747 -89023880 - MLT1C LTR MaLR 0 467 176 21 36 0 0 chr9 28840491 28840519 -89022108 + AT_rich Low_complexity Low_complexity 1 28 0 568 261 153 0 chr9 28841177 28841334 -89021293 + MER5A DNA MER1_type 9 189 0 1062 279 46 61 chr9 28841961 28842021 -89020606 + L1ME LINE L1 5152 5211 -910 2356 53 0 0 chr9 28842021 28842329 -89020298 + AluY SINE Alu 1 308 0 1062 279 46 61 chr9 28842329 28842934 -89019693 + L1ME LINE L1 5211 5808 -313 2365 74 0 19 chr9 28842943 28843254 -89019373 + AluY SINE Alu 1 305 -6 214 182 65 13 chr9 28843329 28843406 -89019221 + (TA)n Simple_repeat Simple_repeat 2 82 0 269 185 15 0 chr9 28843490 28843555 -89019072 + (TA)n Simple_repeat Simple_repeat 1 66 0 626 191 229 16 chr9 28844050 28844233 -89018394 - L1ME LINE L1 -583 5583 5362 1022 209 57 29 chr9 28844251 28844566 -89018061 + L1ME LINE L1 5026 5349 -797 5302 209 31 45 chr9 28845490 28845872 -89016755 - Zaphod DNA AcHobo -2680 1351 965 1611 180 119 67 chr9 28845872 28846350 -89016277 + MLT1D LTR MaLR 1 503 -2 5302 209 31 45 chr9 28846350 28847337 -89015290 - Zaphod DNA AcHobo -3066 965 1 23 0 0 0 chr9 28848656 28848679 -89013948 + AT_rich Low_complexity Low_complexity 1 23 0 198 0 0 0 chr9 28848705 28848727 -89013900 + (A)n Simple_repeat Simple_repeat 1 22 0 205 350 12 12 chr9 28849075 28849155 -89013472 - MER5A DNA MER1_type -64 125 46 * 367 291 10 10 chr9 28849085 28849188 -89013439 + MER5B DNA MER1_type 75 177 -1 1161 181 37 19 chr9 28849202 28849417 -89013210 + MER20 DNA MER1_type 1 219 0 1757 134 40 118 chr9 28849444 28849892 -89012735 + L1MA3 LINE L1 5893 6305 0 709 196 15 103 chr9 28850751 28850955 -89011672 + MER53 DNA DNA 4 189 0 1045 247 208 28 chr9 28851904 28852684 -89009943 - L2 LINE L2 -28 3285 2376 991 252 87 29 chr9 28852760 28853003 -89009624 - L1MC4 LINE L1 -143 7899 7633 2143 96 23 13 chr9 28853003 28853304 -89009323 - AluSx SINE Alu -7 305 2 991 252 87 29 chr9 28853304 28853370 -89009257 - L1MC4 LINE L1 -409 7633 7572 1865 215 60 77 chr9 28853374 28853423 -89009204 - MLT1E LTR MaLR -4 589 541 333 47 0 0 chr9 28853423 28853466 -89009161 + (CA)n Simple_repeat Simple_repeat 2 44 0 1865 215 60 77 chr9 28853466 28853951 -89008676 - MLT1E LTR MaLR -52 541 64 1075 231 81 19 chr9 28854031 28854875 -89007752 - L1MC4 LINE L1 -502 7540 6479 866 202 26 47 chr9 28856136 28856329 -89006298 + MER5A DNA MER1_type 1 189 0 2449 78 0 0 chr9 28856691 28856999 -89005628 - AluY SINE Alu -3 308 1 2578 113 80 28 chr9 28857069 28857492 -89005135 + MER65A LTR ERV1 1 445 0 3489 90 0 26 chr9 28858176 28858632 -89003995 + MLT2A1 LTR ERVL 1 444 0 45422 69 8 1 chr9 28858632 28864247 -88998380 + HERVL-A1 LTR ERVL 1 5654 0 3233 62 5 2 chr9 28864249 28864649 -88997978 + MLT2A1 LTR ERVL 3 403 -41 233 245 0 0 chr9 28864667 28864720 -88997907 + (TA)n Simple_repeat Simple_repeat 2 54 0 233 59 0 0 chr9 28864725 28864759 -88997868 + MLT2A1 LTR ERVL 370 403 -41 203 283 22 22 chr9 28864776 28864868 -88997759 + (CATATA)n Simple_repeat Simple_repeat 1 92 0 363 92 0 172 chr9 28864868 28864955 -88997672 + MLT2A2 LTR ERVL 382 453 0 24236 147 9 24 chr9 28865933 28868943 -88993684 + L1P3 LINE L1 3 2967 -3494 2084 97 4 0 chr9 28868943 28869212 -88993415 - AluY SINE Alu -41 270 1 24236 147 9 24 chr9 28869212 28871518 -88991109 + L1P3 LINE L1 2967 5305 -1156 6823 89 1 2 chr9 28871518 28872771 -88989856 + L1PA8A LINE L1 4878 6131 0 850 172 0 8 chr9 28873457 28873591 -88989036 + FLAM_C SINE Alu 1 133 0 7888 126 25 18 chr9 28873623 28874846 -88987781 + Tigger3b DNA MER2_type 1 1231 0 21 57 0 0 chr9 28874934 28874969 -88987658 + AT_rich Low_complexity Low_complexity 1 35 0 2143 229 28 20 chr9 28875055 28875591 -88987036 - L1ME1 LINE L1 -9 6157 5618 4353 124 46 88 chr9 28875781 28876600 -88986027 + LTR1 LTR ERV1 1 785 0 2326 65 17 3 chr9 28877067 28877361 -88985266 + AluY SINE Alu 1 298 -13 2267 84 3 0 chr9 28879569 28879876 -88982751 - AluSp SINE Alu 0 308 1 723 320 70 17 chr9 28880454 28880938 -88981689 + L2 LINE L2 2554 3066 -247 384 103 0 0 chr9 28881061 28881119 -88981508 + (TGGA)n Simple_repeat Simple_repeat 3 60 0 2161 180 52 76 chr9 28881363 28881608 -88981019 + MLT1E2 LTR MaLR 62 311 -315 391 181 12 24 chr9 28881608 28881691 -88980936 + L1PB4 LINE L1 6073 6154 -2 2161 180 52 76 chr9 28881691 28881945 -88980682 + MLT1E2 LTR MaLR 311 548 -78 1236 126 111 0 chr9 28881945 28882152 -88980475 - MER30 DNA MER1_type 0 230 1 2161 180 52 76 chr9 28882152 28882229 -88980398 + MLT1E2 LTR MaLR 548 625 -1 24 53 0 0 chr9 28882542 28882580 -88980047 + AT_rich Low_complexity Low_complexity 1 38 0 445 275 23 30 chr9 28883184 28883315 -88979312 + MIR SINE MIR 31 160 -102 212 357 124 25 chr9 28884273 28884757 -88977870 + L2 LINE L2 2445 2976 -338 1744 166 0 33 chr9 28884903 28885204 -88977423 - AluJo SINE Alu -21 291 1 1719 123 0 16 chr9 28885316 28885559 -88977068 - AluSc SINE Alu -1 308 70 349 267 113 104 chr9 28885762 28886242 -88976385 + L2 LINE L2 2824 3307 -6 2049 186 49 72 chr9 28886593 28887202 -88975425 + LTR9 LTR ERV1 18 612 0 1586 205 42 13 chr9 28887256 28887641 -88974986 - L1MD3 LINE L1 -813 7182 6787 231 280 0 0 chr9 28887634 28887684 -88974943 - L1MC3 LINE L1 -1058 6727 6678 * 616 235 11 21 chr9 28887684 28887871 -88974756 - L1MC4a LINE L1 -1276 6532 6348 10486 154 53 52 chr9 28888085 28890500 -88972127 - Tigger1 DNA MER2_type 0 2418 1 661 227 83 61 chr9 28890945 28891223 -88971404 + MARNA DNA Mariner 143 426 -160 526 185 84 8 chr9 28891308 28891427 -88971200 + FLAM_C SINE Alu 1 128 -15 192 286 52 13 chr9 28891812 28891889 -88970738 + MIR SINE MIR 177 256 -6 185 128 0 26 chr9 28892296 28892335 -88970292 + (CATG)n Simple_repeat Simple_repeat 1 38 0 524 301 54 16 chr9 28893447 28893633 -88968994 - MIR SINE MIR -19 243 51 2093 150 0 0 chr9 28893927 28894233 -88968394 - AluSx SINE Alu -6 306 1 185 284 157 10 chr9 28894448 28894550 -88968077 + MIR SINE MIR 17 133 -75 204 317 12 12 chr9 28895636 28895718 -88966909 + CT-rich Low_complexity Low_complexity 2 83 0 189 0 0 0 chr9 28896278 28896299 -88966328 + (T)n Simple_repeat Simple_repeat 1 21 0 438 307 87 15 chr9 28896386 28896572 -88966055 + MIR SINE MIR 1 198 -64 464 117 13 0 chr9 28896717 28896794 -88965833 - MER51C LTR ERV1 -2 638 561 221 342 13 13 chr9 28898565 28898644 -88963983 + L2 LINE L2 3187 3265 -7 424 239 83 0 chr9 28899901 28900010 -88962617 - MIR SINE MIR -73 189 72 298 243 15 0 chr9 28900045 28900148 -88962479 - MLT2E LTR ERVL 0 663 532 27 29 0 0 chr9 28900160 28900194 -88962433 + AT_rich Low_complexity Low_complexity 1 34 0 198 103 0 0 chr9 28900430 28900459 -88962168 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 185 343 0 14 chr9 28900946 28901016 -88961611 - MIR3 SINE MIR -41 167 99 24 0 0 0 chr9 28901028 28901052 -88961575 + AT_rich Low_complexity Low_complexity 1 24 0 201 326 32 11 chr9 28902375 28902470 -88960157 + MIR SINE MIR 117 213 -49 791 292 42 4 chr9 28904213 28904453 -88958174 + MIR SINE MIR 13 261 -1 2342 57 3 3 chr9 28904559 28904857 -88957770 - AluY SINE Alu -13 298 1 317 320 29 0 chr9 28904982 28905085 -88957542 + MIR SINE MIR 46 151 -111 390 203 47 42 chr9 28905487 28905629 -88956998 + LTR45B LTR ERV1 324 503 -22 9540 195 43 12 chr9 28905629 28907509 -88955118 - L1M1 LINE L1 -671 5634 3656 2855 19 0 0 chr9 28907509 28907825 -88954802 - AluYb8 SINE Alu -2 316 1 9540 195 43 12 chr9 28907825 28908339 -88954288 - L1M1 LINE L1 -2649 3656 3159 183 233 0 23 chr9 28909505 28909548 -88953079 - MIR3 SINE MIR -29 179 138 410 267 78 37 chr9 28912233 28912424 -88950203 - MIR SINE MIR -44 218 20 486 322 191 23 chr9 28912517 28913004 -88949623 + L3 LINE CR1 999 1567 -10 591 246 0 0 chr9 28916314 28916428 -88946199 - MER81 DNA DNA 0 114 1 1844 100 20 7 chr9 28916708 28917065 -88945562 - MER51C LTR ERV1 -361 279 1 249 331 27 47 chr9 28917159 28917269 -88945358 - MIR SINE MIR -24 238 130 5208 68 134 4 chr9 28917269 28917999 -88944628 + LTR12 LTR ERV1 1 825 -1 249 331 27 47 chr9 28917999 28918036 -88944591 - MIR SINE MIR -132 130 94 458 315 81 55 chr9 28918483 28918721 -88943906 - MIR SINE MIR -20 242 6 524 291 90 33 chr9 28919283 28919527 -88943100 - MIR SINE MIR -4 258 1 264 278 157 0 chr9 28919672 28919780 -88942847 - MIR SINE MIR -87 175 51 246 330 93 0 chr9 28920075 28920172 -88942455 + MIR3 SINE MIR 94 199 -9 224 274 0 0 chr9 28920529 28920580 -88942047 + L2 LINE L2 2703 2753 -561 234 0 0 0 chr9 28920618 28920644 -88941983 + (T)n Simple_repeat Simple_repeat 1 26 0 670 107 83 0 chr9 28920878 28920999 -88941628 + L1MA9 LINE L1 6182 6312 0 2183 109 77 6 chr9 28921234 28921574 -88941053 + THE1B LTR MaLR 1 364 0 418 335 18 0 chr9 28921587 28921751 -88940876 - MER63A DNA MER1_type -1 209 43 6795 64 6 3 chr9 28921768 28923412 -88939215 - L1PA7 LINE L1 0 6154 4507 2481 68 21 6 chr9 28923420 28923756 -88938871 - L1PA7 LINE L1 -4 6150 5810 522 209 0 16 chr9 28923757 28923886 -88938741 - L1PA7 LINE L1 -1623 4523 4397 192 425 50 22 chr9 28924153 28924431 -88938196 - L2 LINE L2 -22 3250 2965 289 200 13 80 chr9 28924608 28924683 -88937944 - MER5A DNA MER1_type -111 78 9 4811 163 34 11 chr9 28924686 28925588 -88937039 - MER49 LTR ERV1 0 923 1 805 240 0 6 chr9 28926534 28926713 -88935914 - MER5B DNA MER1_type 0 178 1 303 299 120 8 chr9 28926963 28927080 -88935547 + MIR SINE MIR 62 191 -71 249 203 174 0 chr9 28928459 28928528 -88934099 - MLT1I LTR MaLR -12 397 317 387 215 84 9 chr9 28928634 28928741 -88933886 - MLT1I LTR MaLR -254 155 41 349 318 18 35 chr9 28930154 28930324 -88932303 + MIR SINE MIR 46 212 -50 336 235 154 72 chr9 28930685 28930991 -88931636 + MLT1H LTR MaLR 116 446 -103 446 308 30 15 chr9 28931767 28931900 -88930727 + L2 LINE L2 3138 3272 0 434 382 96 14 chr9 28931934 28932287 -88930340 - L3 LINE CR1 -183 1394 1013 235 162 27 27 chr9 28932342 28932416 -88930211 + (TATAA)n Simple_repeat Simple_repeat 3 76 0 324 257 20 88 chr9 28932444 28932592 -88930035 - MIR SINE MIR -66 196 59 413 333 131 22 chr9 28932808 28933075 -88929552 - L3 LINE CR1 -629 948 653 1153 140 0 91 chr9 28933346 28933567 -88929060 - AluJo SINE Alu -16 296 96 1829 166 3 10 chr9 28933754 28934049 -88928578 - AluJb SINE Alu -14 298 6 33803 40 32 2 chr9 28934465 28938896 -88923731 - L1P LINE L1 -1579 4567 2 445 340 25 10 chr9 28939083 28939283 -88923344 - MIR SINE MIR -58 204 2 816 190 22 5 chr9 28939559 28939743 -88922884 - MER53 DNA DNA -2 187 1 1451 220 67 73 chr9 28939916 28940393 -88922234 - MLT1E1 LTR MaLR -180 474 1 181 337 96 0 chr9 28941515 28941598 -88921029 - MER5A DNA MER1_type -92 97 7 230 371 36 0 chr9 28942351 28942491 -88920136 + L2 LINE L2 2168 2312 -1002 22 0 0 0 chr9 28944030 28944052 -88918575 + AT_rich Low_complexity Low_complexity 1 22 0 447 19 0 0 chr9 28944059 28944111 -88918516 + (CA)n Simple_repeat Simple_repeat 2 53 0 355 152 30 0 chr9 28944116 28944182 -88918445 + L1ME4a LINE L1 5979 6046 -75 21 0 0 0 chr9 28944220 28944241 -88918386 + AT_rich Low_complexity Low_complexity 1 21 0 422 200 36 27 chr9 28944394 28944504 -88918123 - L2 LINE L2 -1370 1944 1834 2209 110 0 25 chr9 28945114 28945433 -88917194 + AluSx SINE Alu 1 311 -1 405 263 63 46 chr9 28947001 28947176 -88915451 - MIR SINE MIR -45 217 40 295 245 274 0 chr9 28947272 28947378 -88915249 + MIR SINE MIR 119 253 -9 221 324 209 7 chr9 28948311 28948459 -88914168 - MIR SINE MIR -33 229 52 243 337 0 10 chr9 28948529 28948627 -88914000 + MIR SINE MIR 154 250 -12 26533 130 17 88 chr9 28950231 28956222 -88906405 - L1PA8A LINE L1 -599 5532 1 265 250 0 0 chr9 28956225 28956293 -88906334 + CT-rich Low_complexity Low_complexity 3 70 0 571 354 45 15 chr9 28956352 28956824 -88905803 + ERVL LTR ERVL 1909 2394 -3370 1235 226 24 0 chr9 28956884 28957181 -88905446 + L1MA4 LINE L1 5983 6286 -14 2770 181 16 27 chr9 28957439 28958064 -88904563 - L1MB8 LINE L1 0 6178 5561 2294 133 83 10 chr9 28958490 28958889 -88903738 + MSTA LTR MaLR 1 428 0 6873 200 32 1 chr9 28958889 28960321 -88902306 + MSTA-int LTR MaLR 1 1476 -175 1679 166 36 25 chr9 28960745 28961101 -88901526 + THE1C LTR MaLR 14 373 -2 295 316 61 0 chr9 28961494 28961608 -88901019 + Charlie8 DNA MER1_type 89 209 -2208 740 242 139 28 chr9 28961854 28962243 -88900384 + LTR16A1 LTR ERVL 20 451 -6 274 290 0 56 chr9 28962397 28962504 -88900123 + MER117 DNA MER1_type 1 101 -96 1881 229 64 22 chr9 28962548 28963081 -88899546 - MER74B LTR ERVL -67 555 1 260 340 10 29 chr9 28963184 28963287 -88899340 + L2 LINE L2 2995 3095 -177 373 209 90 81 chr9 28963337 28963548 -88899079 - L1ME1 LINE L1 -6 6160 5948 838 180 25 62 chr9 28963680 28963924 -88898703 - L1ME1 LINE L1 -168 5998 5764 248 274 24 65 chr9 28963958 28964082 -88898545 - MER74A LTR ERVL -56 502 384 351 109 18 0 chr9 28964136 28964191 -88898436 - L1ME LINE L1 -429 5735 5680 628 208 33 29 chr9 28964191 28964541 -88898086 + L1ME LINE L1 5190 5650 -516 2068 150 0 7 chr9 28964672 28964979 -88897648 + AluSx SINE Alu 1 305 -7 640 302 68 38 chr9 28964985 28965353 -88897274 + MER93a LTR ERV1 13 391 -11 13270 195 62 30 chr9 28965964 28968364 -88894263 - L1PA14 LINE L1 -134 7465 5144 252 0 0 0 chr9 28968364 28968392 -88894235 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 13270 195 62 30 chr9 28968392 28968953 -88893674 - L1PA14 LINE L1 -2455 5144 4602 2738 17 0 0 chr9 28968953 28969253 -88893374 - AluYa5 SINE Alu -11 300 1 13270 195 62 30 chr9 28969253 28970605 -88892022 - L1PA14 LINE L1 -2997 4602 3002 10665 137 16 15 chr9 28970609 28972874 -88889753 - L1PA14 LINE L1 -5029 2552 1 751 149 91 0 chr9 28974117 28974271 -88888356 + L1MA7 LINE L1 6089 6256 -35 257 89 22 0 chr9 28974371 28974416 -88888211 + (TCTA)n Simple_repeat Simple_repeat 3 48 0 317 291 86 7 chr9 28974426 28974577 -88888050 + LTR50 LTR ERVL 2 164 -631 210 37 0 0 chr9 28974584 28974611 -88888016 + (CAA)n Simple_repeat Simple_repeat 1 27 0 316 236 68 26 chr9 28974970 28975152 -88887475 + LTR41 LTR ERVL 582 792 -3 418 277 62 23 chr9 28975154 28975284 -88887343 - L2 LINE L2 -12 3301 3167 231 179 0 0 chr9 28975688 28975727 -88886900 - MER5B DNA MER1_type -2 176 138 1407 198 59 53 chr9 28975747 28976105 -88886522 + MLT1A1 LTR MaLR 1 360 -5 562 219 0 0 chr9 28976108 28976213 -88886414 + MER5B DNA MER1_type 74 178 0 220 288 125 0 chr9 28977983 28978063 -88884564 + MIR SINE MIR 16 105 -103 432 346 65 30 chr9 28978083 28978314 -88884313 - L3 LINE CR1 -43 1534 1296 184 291 70 0 chr9 28978738 28978824 -88883803 + L2 LINE L2 3134 3225 -88 772 199 73 37 chr9 28979408 28979599 -88883028 - MER58A DNA MER1_type -26 198 1 645 242 143 0 chr9 28979607 28979768 -88882859 + MER5A DNA MER1_type 1 184 -5 210 298 0 18 chr9 28980617 28980674 -88881953 - L3 LINE CR1 -96 1481 1426 204 261 0 0 chr9 28980683 28980729 -88881898 + L2 LINE L2 3265 3310 -3 591 306 64 9 chr9 28980875 28981094 -88881533 - MIR SINE MIR -27 235 5 230 263 181 15 chr9 28982311 28982444 -88880183 - L2 LINE L2 0 3313 3159 197 211 26 0 chr9 28982672 28982710 -88879917 - L2 LINE L2 -15 3257 3219 451 307 109 33 chr9 28982929 28983232 -88879395 + MLT1I LTR MaLR 50 375 -34 215 380 65 0 chr9 28983391 28983499 -88879128 + L2 LINE L2 3158 3272 0 6604 83 6 2 chr9 28983733 28984100 -88878527 + L1PA10 LINE L1 4759 5123 -1045 2068 121 4 4 chr9 28984100 28984381 -88878246 + AluSp SINE Alu 1 281 -32 267 31 0 0 chr9 28984383 28984415 -88878212 + (GAAAA)n Simple_repeat Simple_repeat 4 35 0 6604 83 6 2 chr9 28984415 28985478 -88877149 + L1PA10 LINE L1 5123 6167 -1 182 337 33 43 chr9 28985929 28986021 -88876606 - L2 LINE L2 -2819 495 405 276 278 52 43 chr9 28987151 28987266 -88875361 + L2 LINE L2 3156 3271 -1 277 268 113 10 chr9 28987286 28987383 -88875244 - L2 LINE L2 -13 3259 3153 201 256 0 0 chr9 28987956 28987999 -88874628 + L2 LINE L2 3139 3181 -91 226 200 80 0 chr9 28988301 28988351 -88874276 - MER91C DNA MER1_type -47 93 40 202 347 67 0 chr9 28988584 28988659 -88873968 + L2 LINE L2 3188 3267 -5 396 256 200 0 chr9 28988835 28988960 -88873667 + MIR SINE MIR 20 169 -93 673 198 136 11 chr9 28989148 28989325 -88873302 - MER3 DNA MER1_type -1 208 10 315 240 202 0 chr9 28990441 28990570 -88872057 - L1ME4a LINE L1 0 6121 5967 253 241 321 0 chr9 28991584 28991696 -88870931 + MIR SINE MIR 59 206 -56 852 225 13 66 chr9 28991978 28992205 -88870422 - MER20 DNA MER1_type -4 215 1 309 278 202 17 chr9 28992933 28993106 -88869521 - MIR SINE MIR -8 254 50 405 280 88 8 chr9 28993456 28993581 -88869046 - L2 LINE L2 -6 3266 3132 560 313 61 19 chr9 28994649 28994959 -88867668 - MLT1I LTR MaLR -60 349 27 581 298 53 6 chr9 28994993 28995164 -88867463 + MIR SINE MIR 78 256 -6 343 314 0 0 chr9 28996640 28996742 -88865885 - MIR SINE MIR -74 188 87 246 189 0 0 chr9 28996761 28996808 -88865819 + MIR SINE MIR 104 151 -57 900 239 39 10 chr9 28996819 28997024 -88865603 - MER20 DNA MER1_type -4 215 5 4826 60 5 2 chr9 28997189 28997804 -88864823 + L1PA8 LINE L1 5542 6158 -14 183 337 24 36 chr9 28997805 28997888 -88864739 + MIR SINE MIR 148 229 -33 262 233 35 23 chr9 28999108 28999194 -88863433 + MER103 DNA DNA 62 148 -18 2157 191 56 34 chr9 28999815 29000371 -88862256 - LTR29 LTR ERV1 -54 568 1 4074 82 11 5 chr9 29000504 29001055 -88861572 + MER41A LTR ERV1 1 554 0 1134 281 42 17 chr9 29002872 29003274 -88859353 - LTR16B LTR ERVL 0 464 53 1226 310 69 30 chr9 29003410 29004016 -88858611 + L2 LINE L2 73 702 -2612 1675 268 76 107 chr9 29004025 29004723 -88857904 + L2 LINE L2 1481 2124 -1190 2269 104 0 13 chr9 29004723 29005022 -88857605 - AluSx SINE Alu -17 295 1 1675 268 76 107 chr9 29005022 29005619 -88857008 + L2 LINE L2 2124 2737 -577 627 95 9 35 chr9 29006406 29006522 -88856105 + MSTA-int LTR MaLR 1468 1580 0 1830 151 143 11 chr9 29006522 29006900 -88855727 + MSTA LTR MaLR 1 428 0 274 255 71 51 chr9 29007013 29007111 -88855516 + L2 LINE L2 3173 3272 0 1841 172 40 36 chr9 29007132 29007679 -88854948 + MLT2A2 LTR ERVL 1 552 -2 395 314 208 20 chr9 29007850 29008153 -88854474 + L3 LINE CR1 1213 1572 -5 24 67 0 0 chr9 29009386 29009431 -88853196 + AT_rich Low_complexity Low_complexity 1 45 0 1975 128 25 7 chr9 29010499 29010781 -88851846 + AluSc SINE Alu 1 287 -22 3765 112 102 0 chr9 29010835 29011469 -88851158 + L1P LINE L1 3943 4641 -1505 1047 81 0 0 chr9 29011472 29011621 -88851006 - L1PA8 LINE L1 -78 6094 5946 1160 220 20 57 chr9 29012730 29013084 -88849543 - MER58B DNA MER1_type 0 341 1 240 35 0 0 chr9 29013249 29013278 -88849349 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 248 248 139 20 chr9 29013859 29013960 -88848667 + L2 LINE L2 3193 3305 -8 28 48 0 0 chr9 29015143 29015185 -88847442 + AT_rich Low_complexity Low_complexity 1 42 0 397 214 97 10 chr9 29015981 29016084 -88846543 - MER94 DNA DNA -19 115 4 352 303 107 8 chr9 29016835 29016957 -88845670 - L2 LINE L2 -2 3270 3137 276 138 69 0 chr9 29018828 29018886 -88843741 + MER96B DNA MER1_type? 355 416 -1 8263 137 13 5 chr9 29019194 29020665 -88841962 - L1P LINE L1 -1859 4287 2805 2828 198 19 68 chr9 29020675 29021638 -88840989 - L1P3 LINE L1 -4735 1140 571 269 266 237 30 chr9 29023066 29023235 -88839392 + MIR SINE MIR 14 217 -45 291 114 0 0 chr9 29023417 29023461 -88839166 + (TG)n Simple_repeat Simple_repeat 1 44 0 348 197 113 63 chr9 29023589 29023731 -88838896 - L1MEc LINE L1 -4614 1782 1634 206 213 0 0 chr9 29024480 29024527 -88838100 + C-rich Low_complexity Low_complexity 1 47 0 461 162 0 0 chr9 29024549 29024623 -88838004 + AluJb SINE Alu 179 252 -60 286 55 0 73 chr9 29024628 29024683 -88837944 + (GGAA)n Simple_repeat Simple_repeat 3 53 0 4306 202 44 25 chr9 29024685 29025695 -88836932 + L1MD2 LINE L1 5118 6149 -210 369 43 0 0 chr9 29025695 29025742 -88836885 + (GA)n Simple_repeat Simple_repeat 2 48 0 4306 202 44 25 chr9 29025742 29025956 -88836671 + L1MD2 LINE L1 6149 6358 -1 2711 108 0 12 chr9 29027258 29027676 -88834951 - LTR46-int LTR ERV1 -3616 3369 2957 753 312 48 45 chr9 29028322 29028659 -88833968 - L2 LINE L2 0 3272 2935 695 102 62 55 chr9 29028780 29028908 -88833719 - L1PA11 LINE L1 -4 6170 6042 8806 114 4 64 chr9 29028913 29030541 -88832086 + L1P LINE L1 3230 4760 -1386 221 333 0 32 chr9 29030906 29030999 -88831628 - L2 LINE L2 -50 3222 3133 2166 144 28 0 chr9 29031076 29031430 -88831197 + THE1B LTR MaLR 1 364 0 27 29 0 0 chr9 29031809 29031843 -88830784 + AT_rich Low_complexity Low_complexity 1 34 0 370 266 86 22 chr9 29031918 29032057 -88830570 - MIR SINE MIR -10 252 105 226 250 10 10 chr9 29032542 29032642 -88829985 + CT-rich Low_complexity Low_complexity 4 103 0 183 42 0 0 chr9 29032649 29032673 -88829954 + (TCCA)n Simple_repeat Simple_repeat 2 25 0 2094 109 42 0 chr9 29033358 29033689 -88828938 + L1PA13 LINE L1 5800 6144 -19 304 272 29 10 chr9 29034556 29034659 -88827968 - L2 LINE L2 -192 3080 2976 483 244 25 125 chr9 29034701 29034980 -88827647 + MIR SINE MIR 12 262 0 2504 83 37 35 chr9 29035721 29036095 -88826532 - THE1C LTR MaLR 0 375 1 352 302 56 8 chr9 29036192 29036318 -88826309 - MIR SINE MIR -116 146 15 313 300 55 0 chr9 29036486 29036596 -88826031 + MER69 DNA AcHobo 137 252 -974 557 241 45 60 chr9 29036671 29036741 -88825886 + MER69 DNA AcHobo 373 443 -2083 1371 171 98 14 chr9 29036741 29037028 -88825599 - AluJb SINE Alu -1 311 1 557 241 45 60 chr9 29037028 29037156 -88825471 + MER69 DNA AcHobo 443 568 -1958 * 1250 231 111 6 chr9 29037144 29037620 -88825007 + MER69 DNA AcHobo 2000 2525 -1 2687 138 5 14 chr9 29037636 29038079 -88824548 - L1PA16 LINE L1 -10 6156 5718 1814 95 67 21 chr9 29038607 29038892 -88823735 - MER1B DNA MER1_type 0 339 42 839 195 0 6 chr9 29039401 29039570 -88823057 + L1PB1 LINE L1 5980 6147 -4 36 0 0 0 chr9 29039570 29039606 -88823021 + AT_rich Low_complexity Low_complexity 1 36 0 239 256 37 24 chr9 29039718 29039800 -88822827 + MER5B DNA MER1_type 17 99 -79 408 194 8 108 chr9 29039931 29040060 -88822567 + MER94 DNA DNA 1 116 -18 296 291 75 22 chr9 29040076 29040210 -88822417 - L3 LINE CR1 -214 1363 1223 231 340 21 21 chr9 29041438 29041532 -88821095 - L2 LINE L2 -206 3066 2973 707 265 51 10 chr9 29041563 29041759 -88820868 - MIR SINE MIR -21 241 38 5552 87 12 4 chr9 29042206 29043382 -88819245 - L1P3 LINE L1 -442 5730 4552 336 349 54 0 chr9 29043627 29043776 -88818851 - L2 LINE L2 -1 3271 3115 314 320 178 18 chr9 29044471 29044696 -88817931 + L1ME4a LINE L1 5590 5850 -271 598 187 41 142 chr9 29044760 29045006 -88817621 - L1MD1 LINE L1 -11 6231 6011 948 223 27 0 chr9 29045007 29045263 -88817364 - L1 LINE L1 -2882 3264 3002 2082 133 23 0 chr9 29045266 29045566 -88817061 - AluSx SINE Alu -5 307 1 8413 163 14 57 chr9 29045584 29047570 -88815057 + L1M1 LINE L1 3566 5472 -748 819 194 11 81 chr9 29047671 29047857 -88814770 + MER58B DNA MER1_type 169 341 0 261 212 85 80 chr9 29047874 29048086 -88814541 + L1ME4a LINE L1 5862 6074 -47 281 24 49 0 chr9 29049508 29049549 -88813078 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 276 261 70 35 chr9 29050629 29050771 -88811856 - MER117 DNA MER1_type -49 148 2 378 207 51 12 chr9 29050810 29050907 -88811720 - MIR3 SINE MIR -49 159 57 250 304 88 47 chr9 29051268 29051416 -88811211 - MIR3 SINE MIR -6 202 49 461 322 17 17 chr9 29051433 29051610 -88811017 + MER5B DNA MER1_type 1 177 -1 205 348 75 25 chr9 29052952 29053113 -88809514 - L3 LINE CR1 -62 1515 1347 486 288 62 0 chr9 29053141 29053287 -88809340 - MER63 DNA MER1_type -276 786 6 229 315 0 22 chr9 29053292 29053384 -88809243 - L3 LINE CR1 -263 1314 1225 227 335 118 19 chr9 29053436 29053597 -88809030 + MIR SINE MIR 86 262 0 1414 226 160 63 chr9 29054111 29054681 -88807946 + MLT1E1 LTR MaLR 23 647 -7 187 320 122 27 chr9 29054689 29054836 -88807791 - L3 LINE CR1 -329 1248 1088 229 283 50 50 chr9 29055882 29055981 -88806646 - MIR SINE MIR -65 143 45 21 0 0 0 chr9 29056063 29056084 -88806543 + AT_rich Low_complexity Low_complexity 1 21 0 184 218 91 36 chr9 29056304 29056359 -88806268 - L2 LINE L2 -1 3271 3214 433 192 23 100 chr9 29056370 29056500 -88806127 - Charlie7 DNA MER1_type -474 2138 2019 935 211 31 75 chr9 29056514 29056832 -88805795 - Charlie7 DNA MER1_type -814 1798 1495 1687 157 20 17 chr9 29057466 29057759 -88804868 - AluJb SINE Alu -17 295 2 21 36 0 0 chr9 29057913 29057941 -88804686 + AT_rich Low_complexity Low_complexity 1 28 0 443 302 92 25 chr9 29058175 29058643 -88803984 - HAL1b LINE L1 -829 1532 169 661 213 0 22 chr9 29058715 29058851 -88803776 - FLAM_A SINE Alu 0 133 1 189 213 0 0 chr9 29058925 29058972 -88803655 + CT-rich Low_complexity Low_complexity 6 52 0 2409 194 36 27 chr9 29059710 29060263 -88802364 - MER74A LTR ERVL 0 558 1 485 302 73 0 chr9 29060408 29060600 -88802027 + MIR SINE MIR 1 206 -56 1137 111 0 0 chr9 29060761 29060914 -88801713 + MER41C LTR ERV1 1 153 -401 230 182 23 0 chr9 29061015 29061059 -88801568 + MER41B LTR ERV1 591 635 0 333 328 40 50 chr9 29061426 29061624 -88801003 - L2 LINE L2 0 3313 3118 2314 104 3 0 chr9 29062015 29062323 -88800304 - AluSg SINE Alu -1 309 1 317 303 0 38 chr9 29063088 29063220 -88799407 - L1ME LINE L1 -391 5730 5604 13401 116 18 16 chr9 29063635 29065695 -88796932 - LTR46-int LTR ERV1 -1425 5560 3498 231 61 0 0 chr9 29065984 29066017 -88796610 + (TC)n Simple_repeat Simple_repeat 1 33 0 813 186 169 0 chr9 29066103 29066275 -88796352 - MER3 DNA MER1_type -8 201 1 1652 239 70 25 chr9 29066806 29067321 -88795306 + MER68 LTR ERV1 1 538 -24 204 176 0 0 chr9 29067516 29067550 -88795077 + L2 LINE L2 3264 3297 -16 261 75 0 0 chr9 29069640 29069680 -88792947 + (A)n Simple_repeat Simple_repeat 1 40 0 376 239 132 48 chr9 29069699 29069866 -88792761 + MIR SINE MIR 50 230 -32 289 250 12 0 chr9 29071308 29071388 -88791239 - LTR58 LTR ERV1 -249 430 350 508 256 30 54 chr9 29073865 29074033 -88788594 + MIR3 SINE MIR 31 194 -14 2661 156 66 10 chr9 29074458 29074946 -88787681 - MLT2B2 LTR ERVL 0 515 1 1972 154 170 29 chr9 29075624 29076078 -88786549 + MLT2B1 LTR ERVL 1 518 -2 2146 141 123 5 chr9 29076843 29077226 -88785401 + MSTA LTR MaLR 1 428 0 28 0 0 0 chr9 29077850 29077878 -88784749 + AT_rich Low_complexity Low_complexity 1 28 0 297 0 0 0 chr9 29077991 29078024 -88784603 + (CA)n Simple_repeat Simple_repeat 2 34 0 2184 263 94 33 chr9 29078056 29079318 -88783309 + L1MEc LINE L1 745 2083 -4313 180 0 54 54 chr9 29079976 29080013 -88782614 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2436 52 0 0 chr9 29080015 29080305 -88782322 - AluY SINE Alu -21 290 1 261 193 53 0 chr9 29080913 29080970 -88781657 - MIR SINE MIR -96 166 107 315 0 0 0 chr9 29081769 29081804 -88780823 + (TA)n Simple_repeat Simple_repeat 2 36 0 334 268 113 7 chr9 29081896 29082038 -88780589 - MIR SINE MIR 0 262 106 220 349 9 19 chr9 29082278 29082384 -88780243 - MER5A DNA MER1_type -14 175 71 302 357 77 32 chr9 29083094 29083405 -88779222 + L3 LINE CR1 142 466 -1111 313 331 22 29 chr9 29083898 29084037 -88778590 - L1ME3 LINE L1 -231 5931 5794 253 216 0 0 chr9 29084105 29084156 -88778471 + MER33 DNA MER1_type 41 91 -233 303 205 58 42 chr9 29084171 29084304 -88778323 - L1ME3 LINE L1 -388 5776 5643 382 320 17 6 chr9 29084469 29084647 -88777980 - L1M4 LINE L1 -1470 4676 4497 422 295 97 15 chr9 29084972 29085446 -88777181 - L1M4 LINE L1 -2464 3682 3170 25 51 0 0 chr9 29086742 29086781 -88775846 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr9 29087742 29087763 -88774864 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr9 29088427 29088451 -88774176 + (T)n Simple_repeat Simple_repeat 1 24 0 377 353 153 12 chr9 29090052 29090301 -88772326 + L3 LINE CR1 1032 1315 -262 192 250 115 73 chr9 29090477 29090573 -88772054 - L2 LINE L2 -6 3307 3208 188 236 139 0 chr9 29091082 29091154 -88771473 - MIR SINE MIR -34 228 147 1292 189 100 17 chr9 29091622 29091981 -88770646 - Charlie2 DNA MER1_type -618 2244 1856 255 317 29 0 chr9 29091983 29092087 -88770540 - Charlie2 DNA MER1_type -2537 325 219 344 171 57 34 chr9 29092090 29092178 -88770449 + MIR SINE MIR 106 195 -67 709 205 160 65 chr9 29092475 29092782 -88769845 - MLT1C LTR MaLR -131 336 1 194 337 59 10 chr9 29093916 29094017 -88768610 - L2 LINE L2 -40 3273 3168 7180 39 10 2 chr9 29095179 29096309 -88766318 - L1PA5 LINE L1 -15 6139 5002 323 55 0 55 chr9 29096602 29096657 -88765970 + (T)n Simple_repeat Simple_repeat 1 52 0 6102 97 11 5 chr9 29096680 29097805 -88764822 - L1PB1 LINE L1 0 6151 5027 477 0 0 0 chr9 29099003 29099056 -88763571 + (GGAA)n Simple_repeat Simple_repeat 3 55 0 745 243 88 68 chr9 29099068 29099222 -88763405 + MIR SINE MIR 2 164 -98 1736 54 54 17 chr9 29099222 29099461 -88763166 - AluY SINE Alu 0 311 64 745 243 88 68 chr9 29099461 29099557 -88763070 + MIR SINE MIR 164 257 -5 24 0 0 0 chr9 29099983 29100007 -88762620 + AT_rich Low_complexity Low_complexity 1 24 0 314 273 129 22 chr9 29100388 29100527 -88762100 + MIR3 SINE MIR 38 191 -17 833 299 61 30 chr9 29101609 29102003 -88760624 + MLT1I LTR MaLR 1 406 -3 5731 108 28 3 chr9 29102286 29103729 -88758898 + L1PA13 LINE L1 4686 6159 -4 1760 191 22 19 chr9 29105086 29105452 -88757175 - L1MC1 LINE L1 -1 6332 5966 750 53 0 0 chr9 29105452 29105546 -88757081 - AluSg/x SINE Alu -18 294 201 3929 193 17 12 chr9 29105546 29106915 -88755712 - L1MC1 LINE L1 -408 5925 4546 1558 210 58 6 chr9 29106915 29107262 -88755365 + MLT1A1 LTR MaLR 1 365 0 3929 193 17 12 chr9 29107262 29107292 -88755335 - L1MC1 LINE L1 -1787 4546 4518 819 214 22 39 chr9 29107296 29107525 -88755102 - L1MC1 LINE L1 -1922 4224 4000 1622 153 0 0 chr9 29107548 29107783 -88754844 - AluSx SINE Alu -57 255 21 1316 253 51 0 chr9 29107788 29108159 -88754468 - L1MC1 LINE L1 -2451 3695 3306 508 305 103 14 chr9 29108162 29108385 -88754242 + MLT1K LTR MaLR 346 588 0 255 232 0 18 chr9 29110312 29110368 -88752259 + (TG)n Simple_repeat Simple_repeat 2 56 0 294 136 37 0 chr9 29111185 29111266 -88751361 + CT-rich Low_complexity Low_complexity 2 85 0 225 281 146 12 chr9 29111422 29111504 -88751123 + L3 LINE CR1 1368 1460 -117 233 192 0 0 chr9 29111504 29111556 -88751071 - L1ME LINE L1 -470 5694 5643 4563 249 56 14 chr9 29111614 29113330 -88749297 - L1ME LINE L1 -644 5520 3742 521 256 104 15 chr9 29113486 29113806 -88748821 + L1MEc LINE L1 2014 2317 -3898 198 91 0 0 chr9 29113877 29113910 -88748717 + (TCTA)n Simple_repeat Simple_repeat 4 36 0 262 267 0 76 chr9 29113929 29114034 -88748593 - L1M4 LINE L1 -976 5170 5074 5132 153 27 19 chr9 29114148 29115578 -88747049 + L1PB4 LINE L1 4716 6156 0 2123 101 3 22 chr9 29115612 29115928 -88746699 + AluSg SINE Alu 1 310 0 602 257 77 50 chr9 29116856 29117218 -88745409 + L1ME LINE L1 5282 5653 -468 27 0 0 0 chr9 29118784 29118811 -88743816 + AT_rich Low_complexity Low_complexity 1 27 0 273 299 117 30 chr9 29118969 29119166 -88743461 - L1ME LINE L1 -287 5834 5621 339 324 20 0 chr9 29120293 29120395 -88742232 - ERVL LTR ERVL -463 5301 5198 292 344 132 21 chr9 29120653 29120941 -88741686 - ERVL LTR ERVL -865 4899 4580 429 305 53 102 chr9 29120972 29121536 -88741091 - L2 LINE L2 -209 3063 2532 853 316 193 10 chr9 29121537 29122334 -88740293 - L2 LINE L2 -1096 2218 1276 268 323 54 38 chr9 29122627 29122813 -88739814 + L2 LINE L2 2788 2976 -338 203 311 67 44 chr9 29123012 29123192 -88739435 - L2 LINE L2 -1116 2198 2015 831 317 134 15 chr9 29124747 29125202 -88737425 + L2 LINE L2 2605 3176 -137 2048 152 24 24 chr9 29125202 29125576 -88737051 - THE1C LTR MaLR 0 375 2 831 317 134 15 chr9 29125576 29125733 -88736894 + L2 LINE L2 3176 3313 0 639 287 57 18 chr9 29126013 29126295 -88736332 + L1ME4a LINE L1 5508 5800 -321 21 36 0 0 chr9 29126354 29126382 -88736245 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr9 29126510 29126533 -88736094 + AT_rich Low_complexity Low_complexity 1 23 0 257 211 35 35 chr9 29126647 29126704 -88735923 - L2 LINE L2 -3 3269 3213 302 281 37 0 chr9 29127142 29127224 -88735403 + L2 LINE L2 3227 3311 -2 306 275 0 12 chr9 29128990 29129070 -88733557 + GA-rich Low_complexity Low_complexity 3 81 0 302 329 98 21 chr9 29129134 29129277 -88733350 + L1ME4a LINE L1 5968 6121 0 1322 222 37 53 chr9 29130548 29130927 -88731700 + MLT1A2 LTR MaLR 2 374 0 23 0 0 0 chr9 29131916 29131939 -88730688 + AT_rich Low_complexity Low_complexity 1 23 0 367 244 152 24 chr9 29132195 29132359 -88730268 - MIR SINE MIR -76 186 2 25 31 0 0 chr9 29133912 29133944 -88728683 + AT_rich Low_complexity Low_complexity 1 32 0 2100 91 0 7 chr9 29134938 29135213 -88727414 + AluSc SINE Alu 1 273 -36 198 0 0 0 chr9 29135215 29135237 -88727390 + (GAAAA)n Simple_repeat Simple_repeat 2 23 0 363 258 45 8 chr9 29139924 29140056 -88722571 + MER103 DNA DNA 8 144 -22 420 307 80 62 chr9 29144566 29144791 -88717836 + MIR SINE MIR 2 230 -32 430 272 123 32 chr9 29145786 29146102 -88716525 + L1ME4a LINE L1 4125 4469 -1677 21 0 0 0 chr9 29146150 29146171 -88716456 + AT_rich Low_complexity Low_complexity 1 21 0 340 333 161 19 chr9 29146219 29146690 -88715937 + L1ME4a LINE L1 4628 5165 -981 317 343 102 46 chr9 29146799 29147082 -88715545 + L1ME4a LINE L1 5349 5647 -2161 2250 110 68 11 chr9 29147238 29147593 -88715034 + THE1C LTR MaLR 1 375 0 435 247 44 28 chr9 29147655 29147837 -88714790 + L1ME4a LINE L1 5934 6118 -3 3633 164 52 46 chr9 29147851 29148467 -88714160 - L1MA4A LINE L1 -5 6306 5641 613 73 12 0 chr9 29148467 29148549 -88714078 - THE1A LTR MaLR 0 355 273 3633 164 52 46 chr9 29148549 29148864 -88713763 - L1MA4A LINE L1 -670 5641 5329 4835 242 135 48 chr9 29149137 29149719 -88712908 - L1ME3 LINE L1 -41 6190 5660 2323 65 7 13 chr9 29149719 29150025 -88712602 - AluSp SINE Alu -9 304 1 4835 242 135 48 chr9 29150025 29150594 -88712033 - L1ME3 LINE L1 -571 5660 5142 1616 177 21 14 chr9 29150594 29150882 -88711745 + AluJo SINE Alu 1 290 -22 4835 242 135 48 chr9 29150882 29151074 -88711553 - L1ME3 LINE L1 -1089 5142 4968 2151 113 0 3 chr9 29151074 29151376 -88711251 - AluSc SINE Alu -8 301 1 4835 242 135 48 chr9 29151376 29152229 -88710398 - L1ME3 LINE L1 -1263 4968 4190 1680 172 36 30 chr9 29152229 29152566 -88710061 + MER44D DNA MER2_type 1 609 0 4835 242 135 48 chr9 29152566 29153835 -88708792 - L1ME3 LINE L1 -2041 4190 2417 583 253 80 34 chr9 29154353 29154740 -88707887 - L1ME3 LINE L1 -3945 2451 2047 1703 148 28 1 chr9 29154742 29155082 -88707545 + MER47A DNA MER2_type 2 366 0 252 274 53 42 chr9 29155091 29155186 -88707441 - L1ME3 LINE L1 -4363 2033 1938 752 348 85 22 chr9 29155187 29155728 -88706899 - L2 LINE L2 -343 2971 2397 180 319 21 0 chr9 29156858 29156905 -88705722 + MIR SINE MIR 45 92 -170 339 272 39 19 chr9 29159732 29159835 -88702792 + MIR SINE MIR 103 207 -55 2848 88 0 0 chr9 29160145 29160533 -88702094 + L1PA8 LINE L1 5785 6172 0 410 117 26 26 chr9 29160956 29161033 -88701594 - MLT1J1 LTR MaLR -19 427 351 * 784 301 118 20 chr9 29161015 29161311 -88701316 - MLT1J2 LTR MaLR -123 327 3 223 352 162 0 chr9 29161867 29161972 -88700655 - L2 LINE L2 -8 3264 3143 500 272 123 48 chr9 29162022 29162419 -88700208 + L1ME4a LINE L1 5675 6101 -20 30 45 0 0 chr9 29162629 29162673 -88699954 + AT_rich Low_complexity Low_complexity 1 44 0 590 277 17 23 chr9 29163293 29163470 -88699157 - MIR SINE MIR -59 203 28 225 0 0 0 chr9 29163484 29163509 -88699118 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 377 252 61 29 chr9 29163513 29163679 -88698948 - MIR SINE MIR -51 157 14 282 281 47 23 chr9 29163910 29164038 -88698589 + MER94 DNA DNA 1 131 -3 210 338 148 24 chr9 29164646 29164856 -88697771 + MIR SINE MIR 21 256 -6 22 0 0 0 chr9 29164862 29164884 -88697743 + AT_rich Low_complexity Low_complexity 1 22 0 228 316 8 26 chr9 29164963 29165080 -88697547 + CT-rich Low_complexity Low_complexity 2 116 0 1906 142 0 23 chr9 29165169 29165471 -88697156 - AluSx SINE Alu -17 295 1 1009 238 26 27 chr9 29166648 29167010 -88695617 + MLT2B2 LTR ERVL 106 515 0 302 271 21 42 chr9 29167112 29167208 -88695419 - MER5A DNA MER1_type -83 106 13 428 256 28 126 chr9 29169136 29169351 -88693276 + MER63A DNA MER1_type 12 205 -5 803 202 50 55 chr9 29169772 29169990 -88692637 + MIR SINE MIR 24 240 -22 218 246 16 16 chr9 29170087 29170148 -88692479 + MER5A DNA MER1_type 108 168 -21 514 292 139 5 chr9 29170271 29170473 -88692154 - MIR SINE MIR -30 232 4 1973 195 0 11 chr9 29172123 29172492 -88690135 + MLT1A1 LTR MaLR 1 365 0 516 314 167 10 chr9 29172672 29172876 -88689751 - MIR SINE MIR -15 247 12 552 323 100 23 chr9 29174995 29175215 -88687412 - MIR SINE MIR -6 256 20 411 73 0 0 chr9 29175317 29175372 -88687255 + (A)n Simple_repeat Simple_repeat 1 55 0 238 254 32 0 chr9 29176179 29176242 -88686385 + (CATA)n Simple_repeat Simple_repeat 2 66 0 892 257 45 29 chr9 29176244 29176489 -88686138 - MIR SINE MIR -6 256 8 404 269 80 51 chr9 29176504 29176679 -88685948 + MIR SINE MIR 33 212 -50 215 325 0 25 chr9 29177231 29177311 -88685316 - L2 LINE L2 -6 3307 3230 196 333 0 60 chr9 29177336 29177420 -88685207 + MIR SINE MIR 68 146 -62 * 232 339 59 59 chr9 29177418 29177536 -88685091 - MIR3 SINE MIR -78 130 13 435 183 97 0 chr9 29178578 29178671 -88683956 - MIR SINE MIR -77 185 84 289 255 62 90 chr9 29179191 29179336 -88683291 + MIR SINE MIR 10 150 -112 213 320 48 10 chr9 29180829 29180932 -88681695 + MIR SINE MIR 82 188 -74 270 179 0 0 chr9 29181059 29181115 -88681512 + CT-rich Low_complexity Low_complexity 3 58 0 475 216 137 10 chr9 29181119 29181221 -88681406 - FLAM_A SINE Alu -18 115 1 6742 45 11 1 chr9 29181650 29182489 -88680138 - L1PA5 LINE L1 -14 6140 5294 809 301 39 27 chr9 29182520 29182852 -88679775 + L2 LINE L2 2361 2696 -618 243 338 208 22 chr9 29182859 29183176 -88679451 + L2 LINE L2 2883 3258 -55 339 25 0 0 chr9 29183228 29183268 -88679359 + (TG)n Simple_repeat Simple_repeat 1 40 0 501 325 108 10 chr9 29183468 29183671 -88678956 - MIR SINE MIR -28 234 12 403 150 12 12 chr9 29183938 29184018 -88678609 + MER116 DNA Mariner 1 80 0 360 315 98 16 chr9 29184373 29184557 -88678070 - MIR SINE MIR -61 201 3 224 292 111 0 chr9 29186174 29186246 -88676381 - L2 LINE L2 -6 3307 3228 23 54 0 0 chr9 29186385 29186422 -88676205 + AT_rich Low_complexity Low_complexity 1 37 0 814 170 12 55 chr9 29187174 29187339 -88675288 + AluJb SINE Alu 137 294 -18 2351 195 68 8 chr9 29187582 29188197 -88674430 + L1MA4 LINE L1 2629 3280 -2866 1195 180 138 22 chr9 29188204 29188657 -88673970 + LTR60 LTR ERV1 1 577 -9 4463 177 52 23 chr9 29188823 29189805 -88672822 + L1MA4 LINE L1 3288 4297 -1849 * 4928 140 55 11 chr9 29189804 29190687 -88671940 + L1MA4 LINE L1 5379 6300 0 247 348 59 0 chr9 29191188 29191306 -88671321 + MIR SINE MIR 17 141 -121 188 267 0 0 chr9 29191377 29191422 -88671205 - L2 LINE L2 -11 3261 3217 22 35 0 0 chr9 29191787 29191816 -88670811 + AT_rich Low_complexity Low_complexity 1 29 0 863 226 60 154 chr9 29191831 29192279 -88670348 + MLT1G LTR MaLR 1 403 -139 1869 137 6 38 chr9 29192279 29192593 -88670034 + AluSx SINE Alu 1 304 -8 863 226 60 154 chr9 29192593 29192623 -88670004 + MLT1G LTR MaLR 403 434 -108 324 0 0 0 chr9 29193219 29193255 -88669372 + (GA)n Simple_repeat Simple_repeat 2 37 0 390 40 0 0 chr9 29193633 29193683 -88668944 - MADE1 DNA Mariner -30 50 1 230 250 0 0 chr9 29194150 29194194 -88668433 + polypurine Low_complexity Low_complexity 3 46 0 207 315 14 14 chr9 29194387 29194460 -88668167 - L2 LINE L2 -4 3268 3196 301 261 17 119 chr9 29195207 29195383 -88667244 - MIR3 SINE MIR -32 176 19 4336 164 26 49 chr9 29196458 29197109 -88665518 + MER6 DNA MER2_type 4 668 -197 465 34 0 0 chr9 29197109 29197168 -88665459 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 4336 164 26 49 chr9 29197168 29197254 -88665373 + MER6 DNA MER2_type 668 754 -111 2049 64 0 12 chr9 29197254 29197504 -88665123 - AluY SINE Alu -25 286 40 4336 164 26 49 chr9 29197504 29197647 -88664980 + MER6 DNA MER2_type 754 865 0 31 26 0 0 chr9 29198057 29198095 -88664532 + AT_rich Low_complexity Low_complexity 1 38 0 225 379 26 17 chr9 29198097 29198213 -88664414 + L2 LINE L2 3148 3264 -8 197 333 0 0 chr9 29198417 29198465 -88664162 + L2 LINE L2 3246 3293 -20 24 32 0 0 chr9 29199496 29199527 -88663100 + AT_rich Low_complexity Low_complexity 1 31 0 338 282 0 0 chr9 29200711 29200782 -88661845 - L2 LINE L2 0 3313 3243 186 284 0 45 chr9 29200904 29200971 -88661656 - MIR3 SINE MIR -4 204 141 3728 200 77 21 chr9 29202206 29203951 -88658676 + L1MB7 LINE L1 4092 5936 -242 262 164 0 0 chr9 29203967 29204021 -88658606 + L1MB7 LINE L1 6079 6132 -46 1574 157 23 33 chr9 29204449 29204748 -88657879 + AluJo SINE Alu 1 296 -16 566 286 33 22 chr9 29206665 29206847 -88655780 - MER5A DNA MER1_type -5 184 1 416 244 65 8 chr9 29208393 29208516 -88654111 - L1MC/D LINE L1 -433 5731 5602 276 212 71 47 chr9 29208555 29208640 -88653987 + L1ME1 LINE L1 6062 6148 -18 290 323 123 62 chr9 29209598 29209874 -88652753 - L2 LINE L2 0 3313 3021 9288 178 29 23 chr9 29210293 29212694 -88649933 + L1PA15 LINE L1 3318 5719 -446 2135 144 41 0 chr9 29212705 29213067 -88649560 + L1PA15 LINE L1 5787 6163 -2 271 284 23 23 chr9 29213603 29213691 -88648936 + MIR3 SINE MIR 73 160 -48 227 352 34 34 chr9 29213687 29213863 -88648764 + MER5A DNA MER1_type 13 188 -1 * 3659 262 85 25 chr9 29214007 29214066 -88648561 - L1MCb LINE L1 -2471 4093 4039 1621 158 0 0 chr9 29214066 29214365 -88648262 + AluSx SINE Alu 38 336 0 3659 262 85 25 chr9 29214365 29216418 -88646209 - L1MCb LINE L1 -2525 4039 1884 3717 206 83 145 chr9 29216459 29217934 -88644693 - L1MCb LINE L1 -4851 1194 3 299 322 23 0 chr9 29218011 29218098 -88644529 + MER91A DNA MER1_type 1 89 -107 401 288 142 52 chr9 29219653 29219865 -88642762 + L2 LINE L2 2674 2904 -410 600 169 181 12 chr9 29220141 29220301 -88642326 - MER5A DNA MER1_type 0 189 3 206 375 0 0 chr9 29220351 29220423 -88642204 + MIR SINE MIR 30 101 -107 474 269 192 16 chr9 29220963 29221156 -88641471 - MIR SINE MIR -26 236 10 530 292 72 15 chr9 29221363 29221558 -88641069 + MIR SINE MIR 57 262 0 817 184 80 2 chr9 29222342 29222608 -88640019 + MER2 DNA MER2_type 14 344 -1 378 284 124 12 chr9 29222988 29223157 -88639470 - MER5A DNA MER1_type 0 189 2 204 277 151 17 chr9 29223497 29223616 -88639011 + MIR SINE MIR 128 262 0 28 29 0 0 chr9 29225136 29225171 -88637456 + AT_rich Low_complexity Low_complexity 1 35 0 480 119 76 0 chr9 29225172 29225272 -88637355 - L1MA7 LINE L1 -11 6289 6166 487 257 88 29 chr9 29225275 29225446 -88637181 + MIR SINE MIR 20 200 -62 316 317 31 37 chr9 29226313 29226474 -88636153 - MIR SINE MIR -47 215 56 22 70 0 0 chr9 29228527 29228570 -88634057 + AT_rich Low_complexity Low_complexity 1 43 0 300 27 0 0 chr9 29229662 29229699 -88632928 + (CA)n Simple_repeat Simple_repeat 2 38 0 215 327 53 114 chr9 29231156 29231517 -88631110 + L2 LINE L2 2934 3272 0 639 246 67 42 chr9 29231609 29231849 -88630778 - MIR SINE MIR -10 252 7 2657 24 0 0 chr9 29232194 29232491 -88630136 + AluYa5 SINE Alu 1 297 -14 180 0 0 0 chr9 29234207 29234227 -88628400 + (T)n Simple_repeat Simple_repeat 1 20 0 396 254 156 15 chr9 29234423 29234628 -88627999 - MIR SINE MIR -17 245 12 195 336 98 49 chr9 29234650 29234772 -88627855 - L2 LINE L2 -19 3253 3126 581 227 45 61 chr9 29235718 29235916 -88626711 + MIR SINE MIR 26 220 -42 682 203 150 72 chr9 29237383 29237783 -88624844 - L1MC5 LINE L1 -48 7913 7483 204 266 114 0 chr9 29237948 29238027 -88624600 + MIR SINE MIR 86 173 -89 674 260 51 11 chr9 29240086 29240263 -88622364 - MER5A DNA MER1_type -1 188 5 469 329 60 16 chr9 29241281 29241530 -88621097 + MIR SINE MIR 3 262 0 429 274 181 18 chr9 29241675 29241956 -88620671 + L1ME4a LINE L1 4564 4890 -1256 366 311 112 25 chr9 29242456 29242697 -88619930 + L1ME4a LINE L1 5710 5971 -150 487 330 126 20 chr9 29243553 29243996 -88618631 - L2 LINE L2 -469 2845 2356 363 306 36 9 chr9 29244001 29244112 -88618515 - L2 LINE L2 -33 3280 3167 440 232 76 32 chr9 29244143 29244328 -88618299 + L1MC4a LINE L1 7383 7575 -233 185 206 111 48 chr9 29245305 29245368 -88617259 - L2 LINE L2 -58 3255 3189 182 370 37 0 chr9 29246491 29246572 -88616055 - MIR SINE MIR -81 127 44 556 345 57 59 chr9 29246713 29247171 -88615456 - L2 LINE L2 -8 3264 2808 427 281 14 58 chr9 29247403 29247542 -88615085 - MER5B DNA MER1_type -1 177 45 233 175 0 0 chr9 29249671 29249711 -88612916 - LTR3b LTR ERVK 0 500 461 3100 144 19 4 chr9 29249713 29250192 -88612435 - LTR3b LTR ERVK -14 486 1 497 245 27 34 chr9 29251031 29251178 -88611449 + MER103 DNA DNA 20 165 -1 229 289 0 0 chr9 29251293 29251383 -88611244 - L1MC4 LINE L1 -1339 6703 6614 210 143 0 0 chr9 29251387 29251422 -88611205 + (TA)n Simple_repeat Simple_repeat 1 35 0 276 396 97 21 chr9 29251585 29251873 -88610754 + L2 LINE L2 2950 3259 -13 280 286 73 38 chr9 29252267 29252554 -88610073 + Charlie7 DNA MER1_type 329 625 -1987 331 168 19 75 chr9 29252684 29252791 -88609836 + Charlie7 DNA MER1_type 2510 2610 -2 284 43 21 43 chr9 29252847 29252894 -88609733 + LTR14B LTR ERVK 1 46 -562 * 1901 100 121 48 chr9 29252882 29253253 -88609374 + LTR14B LTR ERVK 211 608 0 257 292 14 0 chr9 29253684 29253756 -88608871 + MIR SINE MIR 13 85 -177 646 266 116 13 chr9 29254157 29254390 -88608237 - MIR SINE MIR -2 260 4 253 291 186 42 chr9 29254635 29254996 -88607631 + L2 LINE L2 2882 3294 -19 553 191 0 0 chr9 29255066 29255160 -88607467 + L1PB4 LINE L1 6033 6126 -30 440 269 231 16 chr9 29255543 29255729 -88606898 + MIR SINE MIR 1 226 -36 314 202 107 12 chr9 29256200 29256284 -88606343 - L1MC4 LINE L1 -1339 6703 6612 346 184 30 18 chr9 29256284 29256452 -88606175 + (TA)n Simple_repeat Simple_repeat 1 170 0 22 56 0 0 chr9 29256459 29256495 -88606132 + AT_rich Low_complexity Low_complexity 1 36 0 861 186 93 44 chr9 29256505 29256753 -88605874 - L1MB7 LINE L1 0 6184 5925 182 254 0 18 chr9 29257114 29257169 -88605458 - L2 LINE L2 -2 3311 3258 * 188 170 0 113 chr9 29257168 29257221 -88605406 - MIR SINE MIR -75 187 141 620 196 0 0 chr9 29257221 29257323 -88605304 - FLAM_A SINE Alu -15 127 26 387 331 42 7 chr9 29257324 29257466 -88605161 - MIR SINE MIR -113 149 3 349 214 20 92 chr9 29259062 29259160 -88603467 + L2 LINE L2 3223 3313 0 23 33 0 0 chr9 29259338 29259368 -88603259 + AT_rich Low_complexity Low_complexity 1 30 0 203 147 0 0 chr9 29259509 29259543 -88603084 + MIR SINE MIR 118 151 -111 249 291 33 62 chr9 29261250 29261400 -88601227 + MIR SINE MIR 12 159 -49 348 269 15 33 chr9 29261583 29261713 -88600914 - MIR SINE MIR -61 201 78 1345 176 68 84 chr9 29261953 29262333 -88600294 - MLT1A2 LTR MaLR 0 374 1 286 271 0 68 chr9 29262425 29262543 -88600084 - MIR SINE MIR -56 206 97 458 214 68 17 chr9 29262639 29262756 -88599871 - L2 LINE L2 0 3313 3191 266 271 75 9 chr9 29263013 29263120 -88599507 + L2 LINE L2 3192 3305 -8 1576 187 16 26 chr9 29264490 29264800 -88597827 - AluJo SINE Alu -5 307 1 193 348 22 87 chr9 29265428 29265566 -88597061 - MIR3 SINE MIR -74 134 6 26 64 0 0 chr9 29265595 29265642 -88596985 + AT_rich Low_complexity Low_complexity 1 47 0 279 228 94 76 chr9 29267022 29267193 -88595434 + MIR SINE MIR 63 236 -26 528 287 28 6 chr9 29267343 29267524 -88595103 - HsTC2a DNA Tc2 -172 570 386 615 205 0 8 chr9 29267531 29267653 -88594974 + FLAM_C SINE Alu 1 121 -22 1118 261 39 36 chr9 29267666 29268056 -88594571 - HsTC2a DNA Tc2 -347 397 7 263 321 64 28 chr9 29268196 29268305 -88594322 - L2 LINE L2 -5 3267 3155 187 320 10 68 chr9 29268393 29268496 -88594131 - MIR3 SINE MIR -40 168 72 45 62 0 0 chr9 29268703 29268783 -88593844 + AT_rich Low_complexity Low_complexity 1 80 0 516 240 140 43 chr9 29268960 29269260 -88593367 - L1ME3 LINE L1 -211 5951 5623 433 286 68 39 chr9 29269266 29269729 -88592898 - L1M1 LINE L1 -621 5543 5102 342 286 40 29 chr9 29270474 29270668 -88591959 - L1MEc LINE L1 -900 1676 1452 187 85 34 51 chr9 29271566 29271625 -88591002 + GA-rich Low_complexity Low_complexity 2 59 0 575 310 214 36 chr9 29272058 29272356 -88590271 + L3 LINE CR1 62 306 -1271 2151 89 24 7 chr9 29272356 29272647 -88589980 + AluSp SINE Alu 2 297 -16 575 310 214 36 chr9 29272647 29273097 -88589530 + L3 LINE CR1 306 943 -634 1408 349 82 14 chr9 29273496 29274545 -88588082 + L2 LINE L2 2183 3313 0 1161 146 33 38 chr9 29274854 29275067 -88587560 - MER20 DNA MER1_type 0 219 8 544 297 47 18 chr9 29275372 29275618 -88587009 + MIR SINE MIR 13 262 0 180 0 0 0 chr9 29275962 29275982 -88586645 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 222 213 0 0 chr9 29276514 29276561 -88586066 + CT-rich Low_complexity Low_complexity 2 48 0 387 177 0 0 chr9 29277324 29277386 -88585241 + MLT2E LTR ERVL 32 93 -535 221 342 13 0 chr9 29277388 29277464 -88585163 + MIR SINE MIR 178 254 -8 22 35 0 0 chr9 29277840 29277869 -88584758 + AT_rich Low_complexity Low_complexity 1 29 0 318 259 189 14 chr9 29278343 29278486 -88584141 - MIR SINE MIR -89 173 6 417 314 26 7 chr9 29278756 29278909 -88583718 - MIR SINE MIR -26 236 81 334 192 51 0 chr9 29279666 29279744 -88582883 + L1MC4a LINE L1 5808 5889 -1919 1184 264 198 35 chr9 29280652 29281106 -88581521 + MLT1H LTR MaLR 6 533 -16 399 273 97 26 chr9 29281829 29281983 -88580644 + MIR SINE MIR 40 204 -58 315 0 0 0 chr9 29281990 29282025 -88580602 + (CA)n Simple_repeat Simple_repeat 2 36 0 26105 46 8 1 chr9 29282413 29286496 -88576131 + L1PA5 LINE L1 2046 6154 0 819 315 28 8 chr9 29286645 29286896 -88575731 - MIR SINE MIR 0 262 7 3264 30 2 0 chr9 29287017 29287424 -88575203 + L1P LINE L1 4959 5366 -780 1281 192 0 5 chr9 29287424 29287648 -88574979 + AluJo SINE Alu 78 300 -12 377 323 46 15 chr9 29287652 29287782 -88574845 + MIR SINE MIR 122 255 -7 346 299 160 27 chr9 29287904 29288091 -88574536 - MLT1I LTR MaLR -197 212 1 6864 26 0 0 chr9 29288534 29289335 -88573292 + L1PA3 LINE L1 5352 6152 -3 1897 156 6 19 chr9 29289514 29289828 -88572799 + AluSx SINE Alu 3 312 0 444 105 13 0 chr9 29289831 29289907 -88572720 + L1MB8 LINE L1 6095 6171 -7 393 328 191 33 chr9 29290952 29291683 -88570944 + L2 LINE L2 2468 3299 -14 220 264 160 90 chr9 29291767 29291911 -88570716 - L2 LINE L2 -11 3261 3108 1175 267 68 13 chr9 29294802 29295248 -88567379 + MLT1H LTR MaLR 79 542 0 249 98 0 0 chr9 29295745 29295786 -88566841 + (T)n Simple_repeat Simple_repeat 1 41 0 415 249 50 99 chr9 29296797 29296998 -88565629 - L2 LINE L2 -5 3308 3118 1290 191 36 102 chr9 29297039 29297399 -88565228 + MLT1B LTR MaLR 1 332 -58 1898 157 49 12 chr9 29297399 29297724 -88564903 + MER1B DNA MER1_type 1 337 0 1290 191 36 102 chr9 29297724 29297776 -88564851 + MLT1B LTR MaLR 332 386 -4 344 324 147 0 chr9 29298198 29298368 -88564259 + MIR SINE MIR 62 256 -6 299 275 62 167 chr9 29298469 29298793 -88563834 + L2 LINE L2 2941 3230 -42 299 254 44 35 chr9 29298893 29299007 -88563620 + MIR3 SINE MIR 87 201 -7 463 296 66 15 chr9 29300201 29300386 -88562241 - MIR SINE MIR -6 256 65 10300 105 10 4 chr9 29300455 29302909 -88559718 + L1PA8 LINE L1 3710 6172 0 221 0 35 0 chr9 29303386 29303415 -88559212 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 40342 31 22 1 chr9 29303415 29309356 -88553271 - L1HS LINE L1 -16 6139 73 299 95 0 0 chr9 29309447 29309489 -88553138 + L1PA10 LINE L1 5540 5581 -587 1752 116 8 4 chr9 29309489 29309739 -88552888 + L1PA10 LINE L1 5902 6161 -7 598 99 77 0 chr9 29310737 29310828 -88551799 - AluSg/x SINE Alu -125 187 90 557 315 71 21 chr9 29310854 29311092 -88551535 + MIR SINE MIR 13 262 0 21 0 0 0 chr9 29313782 29313803 -88548824 + AT_rich Low_complexity Low_complexity 1 21 0 231 361 118 6 chr9 29313911 29314080 -88548547 - MIR SINE MIR -70 192 5 2327 81 7 10 chr9 29315161 29315456 -88547171 - AluY SINE Alu -17 294 1 431 218 61 87 chr9 29318640 29318869 -88543758 + MLT1H LTR MaLR 74 296 -253 301 296 72 8 chr9 29319304 29319429 -88543198 + MIR SINE MIR 15 147 -115 509 286 32 38 chr9 29319592 29319777 -88542850 - MIR3 SINE MIR -5 203 20 1790 232 50 56 chr9 29320262 29320819 -88541808 + MLT2B3 LTR ERVL 1 554 0 309 332 30 62 chr9 29323422 29323566 -88539061 + MIR SINE MIR 17 154 -67 469 232 87 7 chr9 29324863 29325001 -88537626 - L2 LINE L2 -960 2354 2206 666 312 194 13 chr9 29325196 29325753 -88536874 + L2 LINE L2 2052 2709 -605 249 196 139 76 chr9 29327322 29327480 -88535147 + L2 LINE L2 3098 3265 -48 333 282 12 12 chr9 29327743 29327828 -88534799 - MER91A DNA MER1_type 0 196 112 1957 186 60 55 chr9 29328212 29328689 -88533938 + MLT2B1 LTR ERVL 6 488 -32 261 0 0 0 chr9 29328689 29328718 -88533909 + (CA)n Simple_repeat Simple_repeat 2 30 0 1957 186 60 55 chr9 29328718 29328752 -88533875 + MLT2B1 LTR ERVL 488 520 0 23 0 0 0 chr9 29328808 29328831 -88533796 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr9 29329068 29329095 -88533532 + AT_rich Low_complexity Low_complexity 1 27 0 440 298 44 63 chr9 29329462 29329667 -88532960 - MIR SINE MIR -28 234 34 312 351 155 65 chr9 29331973 29332340 -88530287 + L2 LINE L2 2835 3234 -38 31 68 0 0 chr9 29332401 29332460 -88530167 + AT_rich Low_complexity Low_complexity 1 59 0 366 263 28 50 chr9 29332784 29332969 -88529658 + MER20B DNA MER1_type 17 202 -17 2039 110 14 3 chr9 29333125 29333415 -88529212 + AluSg SINE Alu 1 293 -17 21 0 0 0 chr9 29335392 29335413 -88527214 + AT_rich Low_complexity Low_complexity 1 21 0 286 293 0 20 chr9 29335511 29335610 -88527017 + (TAGA)n Simple_repeat Simple_repeat 4 100 0 225 346 9 20 chr9 29335795 29335947 -88526680 + MER5B DNA MER1_type 1 159 -30 266 180 16 0 chr9 29337121 29337182 -88525445 + CT-rich Low_complexity Low_complexity 1 62 0 288 263 0 0 chr9 29338064 29338144 -88524483 + L1M1 LINE L1 3539 3618 -3947 210 297 14 0 chr9 29338741 29338815 -88523812 + MIR SINE MIR 21 95 -167 545 88 12 0 chr9 29340703 29340783 -88521844 + AluSc SINE Alu 4 84 -225 484 117 45 72 chr9 29340776 29341763 -88520864 + SVA Other Other 496 603 -783 * 1580 102 0 0 chr9 29341867 29342072 -88520555 + AluSc SINE Alu 73 277 -32 403 340 5 5 chr9 29342640 29342846 -88519781 + L1ME LINE L1 3760 3965 -2181 205 204 23 0 chr9 29342885 29342929 -88519698 + (CATATA)n Simple_repeat Simple_repeat 3 47 0 647 298 101 62 chr9 29343175 29343580 -88519047 + L1ME LINE L1 4298 4686 -1460 2228 140 23 52 chr9 29343580 29344022 -88518605 + MSTB1 LTR MaLR 1 429 -3 647 298 101 62 chr9 29344022 29344516 -88518111 + L1ME LINE L1 4686 5312 -834 239 267 100 0 chr9 29344623 29344713 -88517914 + L1ME LINE L1 5539 5637 -484 236 261 72 0 chr9 29344902 29344971 -88517656 + L2 LINE L2 3218 3291 -22 377 308 39 0 chr9 29346904 29347008 -88515619 + L2 LINE L2 2636 2743 -571 1756 217 19 3 chr9 29347166 29347525 -88515102 + MLT1A1 LTR MaLR 1 365 0 311 237 89 82 chr9 29347865 29348000 -88514627 - MIR SINE MIR -21 241 106 10858 102 15 3 chr9 29348076 29349572 -88513055 - THE1B-int LTR MaLR -66 1514 1 1666 119 218 16 chr9 29349572 29349875 -88512752 - THE1B LTR MaLR 0 364 1 649 143 0 0 chr9 29350941 29351053 -88511574 - L1MA7 LINE L1 0 6291 6180 319 343 46 0 chr9 29352167 29352275 -88510352 + L2 LINE L2 3201 3313 0 23 33 0 0 chr9 29353430 29353460 -88509167 + AT_rich Low_complexity Low_complexity 1 30 0 543 304 103 5 chr9 29355837 29356041 -88506586 - MIR SINE MIR -13 249 26 210 335 106 59 chr9 29357579 29357663 -88504964 - L2 LINE L2 0 3272 3193 216 86 0 0 chr9 29357663 29357698 -88504929 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 210 335 106 59 chr9 29357698 29357783 -88504844 - L2 LINE L2 -79 3193 3095 * 250 192 291 46 chr9 29357763 29357914 -88504713 + MIR SINE MIR 10 197 -65 546 287 35 59 chr9 29358646 29358871 -88503756 - L1MEc LINE L1 -6027 369 153 1739 172 0 20 chr9 29358871 29359174 -88503453 - AluSx SINE Alu -11 301 5 546 287 35 59 chr9 29359174 29359289 -88503338 - L1MEc LINE L1 -6243 153 37 338 232 61 20 chr9 29359651 29359750 -88502877 + MLT1K LTR MaLR 435 537 -51 270 276 0 0 chr9 29360431 29360489 -88502138 - L2 LINE L2 -12 3260 3203 24 0 0 0 chr9 29360640 29360664 -88501963 + AT_rich Low_complexity Low_complexity 1 24 0 673 209 32 19 chr9 29361020 29361178 -88501449 - L2 LINE L2 -4 3309 3150 234 217 12 60 chr9 29361223 29361306 -88501321 - L2 LINE L2 -1559 1755 1677 663 302 142 30 chr9 29361311 29361649 -88500978 + L2 LINE L2 2935 3310 -3 181 244 90 64 chr9 29361746 29361824 -88500803 - MIR SINE MIR -39 223 144 2092 171 146 9 chr9 29362040 29362484 -88500143 - MLT1D LTR MaLR 0 505 1 2282 60 16 44 chr9 29363219 29363537 -88499090 + AluY SINE Alu 2 310 -1 2745 7 0 0 chr9 29363601 29363899 -88498728 + AluYa5 SINE Alu 1 298 -13 287 321 0 9 chr9 29363903 29364015 -88498612 - MIR SINE MIR -36 226 116 201 159 0 0 chr9 29365967 29366011 -88496616 + (CA)n Simple_repeat Simple_repeat 1 44 0 247 336 187 0 chr9 29366206 29366313 -88496314 + L2 LINE L2 3137 3263 -9 380 84 0 42 chr9 29366363 29366382 -88496245 + (GA)n Simple_repeat Simple_repeat 1 19 -49 222 62 0 0 chr9 29366382 29366414 -88496213 + (TG)n Simple_repeat Simple_repeat 1 32 0 380 84 0 42 chr9 29366414 29366465 -88496162 + (GA)n Simple_repeat Simple_repeat 19 68 0 341 331 14 14 chr9 29366823 29366962 -88495665 - MLT2E LTR ERVL -450 178 40 185 338 14 27 chr9 29367514 29367588 -88495039 + L2 LINE L2 2710 2782 -532 394 315 31 8 chr9 29368091 29368218 -88494409 - MIR SINE MIR -50 212 83 488 261 33 7 chr9 29368984 29369137 -88493490 + MIR SINE MIR 106 262 0 296 207 96 0 chr9 29369250 29369345 -88493282 - MIR SINE MIR -62 146 88 282 115 39 39 chr9 29370739 29370817 -88491810 + (CTATA)n Simple_repeat Simple_repeat 3 80 0 483 60 5 101 chr9 29370819 29371018 -88491609 + (TA)n Simple_repeat Simple_repeat 1 180 0 323 126 45 18 chr9 29371077 29371188 -88491439 + (CTATA)n Simple_repeat Simple_repeat 2 115 0 180 77 0 0 chr9 29372312 29372338 -88490289 + (CA)n Simple_repeat Simple_repeat 1 26 0 893 230 11 0 chr9 29372897 29373084 -88489543 + MER5A DNA MER1_type 1 189 0 489 103 13 0 chr9 29373256 29373334 -88489293 - L1PA8A LINE L1 -1634 4512 4434 * 6384 89 14 1 chr9 29373326 29374912 -88487715 + L1PA8A LINE L1 4514 6111 -20 718 255 25 6 chr9 29374946 29375107 -88487520 + MER58A DNA MER1_type 1 164 0 420 264 54 36 chr9 29375392 29375559 -88487068 - MER117 DNA MER1_type -23 174 5 188 254 26 9 chr9 29376015 29376129 -88486498 + GA-rich Low_complexity Low_complexity 1 116 0 240 59 0 0 chr9 29376429 29376463 -88486164 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1924 282 44 42 chr9 29377867 29378699 -88483928 - L2 LINE L2 -6 3307 2471 2062 134 3 0 chr9 29378699 29378998 -88483629 + AluSx SINE Alu 1 300 -12 1924 282 44 42 chr9 29378998 29379149 -88483478 - L2 LINE L2 -842 2471 2322 1347 75 0 0 chr9 29380704 29380957 -88481670 + (GGAA)n Simple_repeat Simple_repeat 1 253 0 2095 176 0 11 chr9 29381605 29381964 -88480663 + MLT1A1 LTR MaLR 1 355 -10 204 245 19 0 chr9 29382778 29382831 -88479796 + CT-rich Low_complexity Low_complexity 4 57 0 180 314 129 14 chr9 29382832 29382902 -88479725 - L2 LINE L2 -9 3304 3227 1049 299 128 8 chr9 29382904 29383419 -88479208 + L2 LINE L2 1886 2462 -852 187 133 44 0 chr9 29383475 29383520 -88479107 + (TA)n Simple_repeat Simple_repeat 1 47 0 27 0 0 0 chr9 29383593 29383620 -88479007 + AT_rich Low_complexity Low_complexity 1 27 0 33 25 0 0 chr9 29384602 29384642 -88477985 + AT_rich Low_complexity Low_complexity 1 40 0 1243 269 73 21 chr9 29384869 29385430 -88477197 - MLT1G1 LTR MaLR 0 567 1 697 266 94 5 chr9 29385542 29385745 -88476882 - MIR SINE MIR -29 233 13 388 315 50 57 chr9 29385812 29386250 -88476377 + L1MC/D LINE L1 2154 2588 -3558 312 321 32 43 chr9 29386737 29386924 -88475703 + L1MC/D LINE L1 3288 3472 -2674 284 274 47 58 chr9 29387082 29387356 -88475271 + L1MC/D LINE L1 3692 3962 -2184 728 326 87 72 chr9 29387444 29387993 -88474634 + L1MC/D LINE L1 4080 4619 -1527 2171 170 18 18 chr9 29387993 29388428 -88474199 + L1MA4 LINE L1 5852 6286 -14 728 326 87 72 chr9 29388428 29389103 -88473524 + L1MC/D LINE L1 4619 5322 -824 388 306 89 12 chr9 29389115 29389363 -88473264 + L1MC/D LINE L1 5392 5658 -2150 191 267 253 0 chr9 29390073 29390148 -88472479 - L3 LINE CR1 -11 1566 1473 282 240 0 80 chr9 29390393 29390493 -88472134 + L2 LINE L2 3181 3272 0 2542 55 3 0 chr9 29390564 29390872 -88471755 - AluY SINE Alu -2 309 1 5538 11 0 2 chr9 29392313 29392945 -88469682 - L1PA2 LINE L1 -2 6153 5523 222 150 0 0 chr9 29393021 29393061 -88469566 + (TCC)n Simple_repeat Simple_repeat 3 42 0 1683 181 66 36 chr9 29393162 29393526 -88469101 - MLT1C LTR MaLR -91 376 2 224 333 16 32 chr9 29393526 29393649 -88468978 - MER5A DNA MER1_type -68 121 1 221 244 105 47 chr9 29393906 29393992 -88468635 + MIR SINE MIR 84 174 -88 321 303 71 0 chr9 29394173 29394272 -88468355 + L2 LINE L2 3192 3297 -16 349 284 26 26 chr9 29395110 29395265 -88467362 + MER103 DNA DNA 3 157 -9 195 204 0 0 chr9 29395458 29395502 -88467125 + (CA)n Simple_repeat Simple_repeat 2 45 0 604 289 93 21 chr9 29396526 29396806 -88465821 + L2 LINE L2 2934 3233 -80 2004 131 55 0 chr9 29397135 29397425 -88465202 + AluSg SINE Alu 1 306 -4 724 294 119 39 chr9 29399789 29400278 -88462349 - HAL1 LINE L1 -1968 539 12 23 0 0 0 chr9 29402023 29402046 -88460581 + AT_rich Low_complexity Low_complexity 1 23 0 260 297 0 0 chr9 29403040 29403114 -88459513 + CT-rich Low_complexity Low_complexity 4 77 0 364 91 0 18 chr9 29403169 29403224 -88459403 + MADE1 DNA Mariner 27 80 0 391 308 45 45 chr9 29403509 29403665 -88458962 - MIR SINE MIR -101 161 6 1090 197 5 0 chr9 29403876 29404084 -88458543 - MER3 DNA MER1_type 0 209 1 1009 93 25 12 chr9 29405794 29405956 -88456671 - L1P LINE L1 -1200 4946 4783 23 0 0 0 chr9 29406297 29406320 -88456307 + AT_rich Low_complexity Low_complexity 1 23 0 189 0 0 0 chr9 29406763 29406784 -88455843 + (TC)n Simple_repeat Simple_repeat 1 21 0 203 292 0 0 chr9 29407266 29407314 -88455313 - L2 LINE L2 -17 3255 3208 21 36 0 0 chr9 29407723 29407751 -88454876 + AT_rich Low_complexity Low_complexity 1 28 0 838 239 18 0 chr9 29457839 29458061 -88404566 + L1PA15-16 LINE L1 2575 2800 -4049 1720 170 29 0 chr9 29458274 29458551 -88404076 + AluJb SINE Alu 1 285 -27 503 290 105 0 chr9 29458675 29458837 -88403790 - MIR SINE MIR -32 230 52 2378 165 23 21 chr9 29459333 29459770 -88402857 - Tigger2 DNA MER2_type -1 2717 2280 426 174 0 0 chr9 29459768 29459837 -88402790 - Tigger2 DNA MER2_type -2649 69 1 * 330 238 0 12 chr9 29459996 29460080 -88402547 + LTR67 LTR ERVL 475 557 0 28 0 0 0 chr9 29460095 29460123 -88402504 + AT_rich Low_complexity Low_complexity 1 28 0 323 248 20 20 chr9 29460123 29460272 -88402355 + (TA)n Simple_repeat Simple_repeat 1 149 0 903 236 38 4 chr9 29460282 29460519 -88402108 - L1ME2 LINE L1 -15 6149 5905 318 205 134 18 chr9 29460522 29460634 -88401993 - L1ME2 LINE L1 -466 5698 5574 2214 215 41 20 chr9 29460974 29461587 -88401040 + L1M4 LINE L1 3860 4485 -1661 365 210 217 7 chr9 29461585 29461723 -88400904 - L1ME2 LINE L1 -1501 4645 4479 * 273 350 86 14 chr9 29462015 29462155 -88400472 + L2 LINE L2 3118 3267 -5 183 220 0 0 chr9 29462169 29462219 -88400408 + GA-rich Low_complexity Low_complexity 3 52 0 20721 30 0 0 chr9 29462219 29465473 -88397154 + L1PA3 LINE L1 2902 6155 0 2447 246 25 65 chr9 29465530 29466621 -88396006 + L1ME1 LINE L1 5127 6161 -5 7574 90 15 14 chr9 29466883 29467939 -88394688 - MER11C LTR ERVK -14 1057 1 22 0 0 0 chr9 29468173 29468195 -88394432 + AT_rich Low_complexity Low_complexity 1 22 0 2329 64 0 3 chr9 29469814 29470111 -88392516 - AluY SINE Alu -15 296 1 211 264 167 0 chr9 29470390 29470462 -88392165 - MIR SINE MIR -64 144 61 2351 45 0 78 chr9 29470580 29470912 -88391715 + AluY SINE Alu 1 306 -5 1865 118 7 7 chr9 29471019 29471298 -88391329 + AluSg1 SINE Alu 20 298 -11 299 200 67 22 chr9 29471554 29471644 -88390983 + Charlie7 DNA MER1_type 1 94 -2518 739 274 4 90 chr9 29471786 29472052 -88390575 + MIR SINE MIR 16 258 -4 22 0 0 0 chr9 29472058 29472080 -88390547 + AT_rich Low_complexity Low_complexity 1 22 0 191 257 119 79 chr9 29474369 29474470 -88388157 - MIR SINE MIR -147 115 11 505 266 101 28 chr9 29474676 29474894 -88387733 - MIR SINE MIR 0 262 29 1093 220 61 45 chr9 29475104 29475417 -88387210 - MLT1E2 LTR MaLR -308 318 1 1181 244 75 0 chr9 29475435 29475764 -88386863 + L1ME1 LINE L1 5820 6332 -2 413 340 35 7 chr9 29476040 29476184 -88386443 - MIR3 SINE MIR -38 170 23 23 33 0 0 chr9 29476921 29476951 -88385676 + AT_rich Low_complexity Low_complexity 1 30 0 199 211 26 0 chr9 29477298 29477336 -88385291 + MIR SINE MIR 38 76 -132 226 231 0 19 chr9 29477384 29477436 -88385191 - LTR67 LTR ERVL 0 557 507 565 364 148 6 chr9 29477827 29478218 -88384409 + L2 LINE L2 2669 3114 -199 378 0 0 0 chr9 29478316 29478358 -88384269 + (CA)n Simple_repeat Simple_repeat 2 43 0 356 284 93 12 chr9 29478380 29478542 -88384085 - MIR SINE MIR -86 176 2 2142 121 0 0 chr9 29479197 29479479 -88383148 + AluSx SINE Alu 3 284 -28 540 228 10 93 chr9 29479994 29480187 -88382440 + MER69A DNA AcHobo 1 177 0 3683 136 55 2 chr9 29480230 29480833 -88381794 + MER41B LTR ERV1 1 635 0 236 154 19 0 chr9 29480929 29480981 -88381646 + CT-rich Low_complexity Low_complexity 1 53 0 2115 209 53 51 chr9 29480994 29481313 -88381314 + MER67D LTR ERV1 1 323 -191 2215 113 36 33 chr9 29481313 29481676 -88380951 + THE1B LTR MaLR 1 364 0 2115 209 53 51 chr9 29481676 29481869 -88380758 + MER67D LTR ERV1 323 514 0 2081 135 0 0 chr9 29481885 29482182 -88380445 - AluSg SINE Alu -13 297 1 387 255 26 113 chr9 29482357 29482588 -88380039 + L2 LINE L2 3101 3311 -2 1828 171 51 14 chr9 29482822 29483172 -88379455 + MLT1A1 LTR MaLR 1 363 -2 327 130 0 0 chr9 29483757 29483811 -88378816 + (GGAA)n Simple_repeat Simple_repeat 3 56 0 197 341 82 11 chr9 29484335 29484517 -88378110 + L3 LINE CR1 80 274 -1303 207 125 0 83 chr9 29485488 29485536 -88377091 + L2 LINE L2 2936 2979 -293 289 298 23 38 chr9 29485557 29485688 -88376939 + L2 LINE L2 2958 3086 -186 947 134 23 23 chr9 29485823 29485840 -88376787 - L1MC2 LINE L1 -18 6326 6310 1277 216 45 66 chr9 29485840 29486220 -88376407 + MLT1A2 LTR MaLR 1 372 -2 947 134 23 23 chr9 29486220 29486374 -88376253 - L1MC2 LINE L1 -33 6311 6155 32 57 0 0 chr9 29486931 29486984 -88375643 + AT_rich Low_complexity Low_complexity 1 53 0 1664 191 3 3 chr9 29487381 29487679 -88374948 - AluJb SINE Alu -10 302 5 418 111 111 0 chr9 29488142 29488214 -88374413 + MADE1 DNA Mariner 1 80 0 340 280 11 0 chr9 29490377 29490470 -88372157 + MIR SINE MIR 159 252 -10 21 0 0 0 chr9 29490949 29490970 -88371657 + AT_rich Low_complexity Low_complexity 1 21 0 2236 228 44 9 chr9 29491656 29492608 -88370019 - L1MC/D LINE L1 -427 5815 4830 27 29 0 0 chr9 29492736 29492770 -88369857 + AT_rich Low_complexity Low_complexity 1 34 0 27 0 0 0 chr9 29492899 29492926 -88369701 + AT_rich Low_complexity Low_complexity 1 27 0 330 251 62 56 chr9 29492943 29493122 -88369505 + L1ME4a LINE L1 5924 6103 -18 30 45 0 0 chr9 29493162 29493206 -88369421 + AT_rich Low_complexity Low_complexity 1 44 0 7228 138 4 16 chr9 29493246 29494406 -88368221 + THE1C-int LTR MaLR 435 1580 0 2429 127 14 0 chr9 29494406 29494776 -88367851 + THE1C LTR MaLR 1 375 0 207 0 0 0 chr9 29494811 29494834 -88367793 + (CAAA)n Simple_repeat Simple_repeat 3 25 0 327 266 62 16 chr9 29495254 29495382 -88367245 + MIR SINE MIR 119 252 -10 579 323 84 18 chr9 29495973 29496199 -88366428 + MIR SINE MIR 6 246 -16 27 0 0 0 chr9 29497098 29497125 -88365502 + AT_rich Low_complexity Low_complexity 1 27 0 334 261 71 63 chr9 29500295 29500533 -88362094 + L1ME4a LINE L1 5879 6118 -3 21 0 0 0 chr9 29500542 29500563 -88362064 + AT_rich Low_complexity Low_complexity 1 21 0 1658 258 39 18 chr9 29500743 29501276 -88361351 + MER119 DNA MER1_type 6 583 0 5214 122 35 0 chr9 29501947 29502932 -88359695 - L1PA13 LINE L1 -13 6150 5128 197 358 0 0 chr9 29503394 29503461 -88359166 - L2 LINE L2 -3 3310 3244 567 259 12 53 chr9 29503504 29503674 -88358953 + MER5B DNA MER1_type 15 177 -1 42910 34 21 1 chr9 29504012 29510040 -88352587 + L1PA2 LINE L1 1 6153 -2 864 92 0 0 chr9 29511101 29511242 -88351385 + (TC)n Simple_repeat Simple_repeat 2 142 0 432 0 0 0 chr9 29511241 29511289 -88351338 + (TG)n Simple_repeat Simple_repeat 1 48 0 * 255 330 103 32 chr9 29512239 29512424 -88350203 - MIR SINE MIR -59 203 6 771 288 80 11 chr9 29512494 29512758 -88349869 - L3 LINE CR1 -21 1556 1275 22 35 0 0 chr9 29512849 29512878 -88349749 + AT_rich Low_complexity Low_complexity 1 29 0 696 237 137 14 chr9 29514014 29514233 -88348394 - MIR SINE MIR -4 258 13 212 267 0 40 chr9 29514229 29514304 -88348323 + L2 LINE L2 3236 3307 -6 * 308 281 94 23 chr9 29514516 29514644 -88347983 + MIR SINE MIR 106 242 -20 410 359 28 38 chr9 29515771 29516024 -88346603 + MIR SINE MIR 8 260 -2 491 138 38 0 chr9 29516495 29516575 -88346052 - Tigger7 DNA MER2_type -48 2439 2357 2552 168 95 6 chr9 29516803 29517308 -88345319 + MER44D DNA MER2_type 1 605 0 341 204 46 125 chr9 29517332 29517484 -88345143 + MER112 DNA MER1_type 120 259 -1 285 222 43 103 chr9 29517694 29517811 -88344816 - MIR SINE MIR -82 180 71 193 259 65 111 chr9 29517898 29518006 -88344621 - MER5A DNA MER1_type -22 167 65 366 183 0 0 chr9 29518082 29518153 -88344474 + (TG)n Simple_repeat Simple_repeat 2 72 0 2291 101 7 0 chr9 29518340 29518646 -88343981 - AluSp SINE Alu -5 308 1 472 259 117 25 chr9 29518954 29519116 -88343511 - MIR SINE MIR -65 197 21 186 227 0 0 chr9 29521641 29521685 -88340942 + T-rich Low_complexity Low_complexity 4 47 0 385 357 106 4 chr9 29522176 29522411 -88340216 - L3 LINE CR1 -87 1490 1232 33 25 0 0 chr9 29522607 29522647 -88339980 + AT_rich Low_complexity Low_complexity 1 40 0 920 255 90 65 chr9 29522881 29523415 -88339212 - HAL1 LINE L1 -230 2277 1731 1051 271 97 98 chr9 29523425 29524462 -88338165 - HAL1 LINE L1 -948 1559 522 2614 51 0 0 chr9 29524462 29524773 -88337854 - AluY SINE Alu 0 311 1 1051 271 97 98 chr9 29524773 29525294 -88337333 - HAL1 LINE L1 -1985 522 2 184 340 0 0 chr9 29525835 29525882 -88336745 - L3 LINE CR1 -471 1106 1060 1526 206 54 9 chr9 29527155 29527504 -88335123 - MLT1A1 LTR MaLR 0 365 1 183 100 0 0 chr9 29527947 29527977 -88334650 + (TGGA)n Simple_repeat Simple_repeat 3 32 0 21 36 0 0 chr9 29527980 29528008 -88334619 + AT_rich Low_complexity Low_complexity 1 28 0 1935 185 34 42 chr9 29528224 29528695 -88333932 + L1MA7 LINE L1 5825 6291 0 23 33 0 0 chr9 29528929 29528959 -88333668 + AT_rich Low_complexity Low_complexity 1 30 0 2399 90 0 0 chr9 29529495 29529795 -88332832 + AluSq SINE Alu 1 300 -13 392 211 0 0 chr9 29529918 29529994 -88332633 - MIR SINE MIR -70 192 117 198 71 0 0 chr9 29530084 29530112 -88332515 + (TA)n Simple_repeat Simple_repeat 1 28 0 22 70 0 0 chr9 29530237 29530280 -88332347 + AT_rich Low_complexity Low_complexity 1 43 0 230 308 26 0 chr9 29530624 29530702 -88331925 - MIR SINE MIR -106 156 77 429 20 0 0 chr9 29530967 29531017 -88331610 + (CA)n Simple_repeat Simple_repeat 2 51 0 374 352 55 36 chr9 29531116 29531517 -88331110 + ERVL LTR ERVL 4250 4617 -868 * 637 345 35 60 chr9 29531515 29532135 -88330492 + ERVL LTR ERVL 4719 5323 -441 237 33 0 0 chr9 29532137 29532167 -88330460 + (GAGAA)n Simple_repeat Simple_repeat 2 31 0 461 284 38 33 chr9 29532371 29532554 -88330073 + LTR16A1 LTR ERVL 60 243 -214 278 284 14 14 chr9 29532561 29532635 -88329992 + LTR16A LTR ERVL 363 436 -14 187 316 18 18 chr9 29532668 29532725 -88329902 - MIR SINE MIR -195 67 11 23 0 0 0 chr9 29532952 29532975 -88329652 + AT_rich Low_complexity Low_complexity 1 23 0 385 203 0 0 chr9 29532975 29533044 -88329583 + Tigger2 DNA MER2_type 1 69 -2649 * 2448 158 37 14 chr9 29533034 29533470 -88329157 + Tigger2 DNA MER2_type 2273 2718 0 35 71 0 0 chr9 29534944 29535014 -88327613 + AT_rich Low_complexity Low_complexity 1 70 0 472 335 37 20 chr9 29535489 29535734 -88326893 + L3 LINE CR1 945 1193 -384 323 248 93 47 chr9 29535907 29536036 -88326591 + MER58B DNA MER1_type 207 341 0 245 100 20 0 chr9 29537078 29537128 -88325499 + (CAAAAA)n Simple_repeat Simple_repeat 1 51 0 716 270 99 4 chr9 29537843 29538076 -88324551 + MIR SINE MIR 2 256 -6 622 268 123 18 chr9 29538556 29538784 -88323843 + MIR SINE MIR 1 252 -10 333 0 0 0 chr9 29539132 29539169 -88323458 + (TG)n Simple_repeat Simple_repeat 2 38 0 189 0 0 0 chr9 29540207 29540228 -88322399 + (TA)n Simple_repeat Simple_repeat 2 22 0 308 371 38 0 chr9 29540716 29540875 -88321752 - HAL1b LINE L1 -807 541 377 385 308 25 8 chr9 29540893 29541013 -88321614 - L2 LINE L2 -5 3267 3146 5003 101 43 73 chr9 29542899 29543749 -88318878 + LTR12 LTR ERV1 1 825 -1 932 49 81 0 chr9 29543750 29543873 -88318754 + LTR12 LTR ERV1 582 714 0 775 276 82 44 chr9 29544058 29544533 -88318094 - L1ME3A LINE L1 -281 5889 5397 408 337 57 5 chr9 29544568 29544761 -88317866 - L1MEd LINE L1 -5383 736 534 243 88 0 0 chr9 29544761 29544795 -88317832 + (TC)n Simple_repeat Simple_repeat 2 35 0 29 0 0 0 chr9 29545118 29545147 -88317480 + AT_rich Low_complexity Low_complexity 1 29 0 193 309 48 0 chr9 29545899 29545983 -88316644 - MIR SINE MIR 0 262 175 233 188 21 0 chr9 29546536 29546584 -88316043 + MIR SINE MIR 103 151 -111 361 272 32 24 chr9 29547035 29547160 -88315467 - L1ME2 LINE L1 -35 6129 6004 270 56 0 0 chr9 29547475 29547511 -88315116 + (TG)n Simple_repeat Simple_repeat 1 36 0 2052 121 13 0 chr9 29547804 29548102 -88314525 + AluSc SINE Alu 1 302 -7 351 322 72 7 chr9 29548227 29548379 -88314248 + MIR SINE MIR 29 190 -72 331 276 0 51 chr9 29548379 29548477 -88314150 - MER21B LTR ERV1 -427 436 344 618 204 53 8 chr9 29548497 29548629 -88313998 - MER21B LTR ERV1 -623 240 103 330 266 13 0 chr9 29548674 29548753 -88313874 - MER21B LTR ERV1 -767 96 17 237 333 94 38 chr9 29548871 29549030 -88313597 - MIR SINE MIR -75 187 20 296 216 78 39 chr9 29549046 29549148 -88313479 - L2 LINE L2 -17 3296 3191 272 224 9 93 chr9 29549187 29549294 -88313333 - MIR SINE MIR -62 200 103 1382 266 70 36 chr9 29549579 29549996 -88312631 + LTR16C LTR ERVL 61 491 0 278 297 0 0 chr9 29550320 29550394 -88312233 + CT-rich Low_complexity Low_complexity 2 75 0 373 296 0 53 chr9 29552032 29552184 -88310443 - MIR SINE MIR -5 257 114 23 33 0 0 chr9 29552211 29552241 -88310386 + AT_rich Low_complexity Low_complexity 1 30 0 485 335 49 40 chr9 29552271 29552300 -88310327 - L2 LINE L2 -277 3036 3009 2480 57 0 0 chr9 29552300 29552598 -88310029 + AluY SINE Alu 1 298 -13 485 335 49 40 chr9 29552598 29552792 -88309835 - L2 LINE L2 -304 3009 2811 1057 166 67 46 chr9 29553176 29553233 -88309394 - L1MA8 LINE L1 0 6291 6237 267 31 0 0 chr9 29553233 29553265 -88309362 + (TA)n Simple_repeat Simple_repeat 1 32 0 1057 166 67 46 chr9 29553265 29553421 -88309206 - L1MA8 LINE L1 -54 6237 6068 2489 66 0 0 chr9 29553421 29553724 -88308903 - AluY SINE Alu -8 303 1 1057 166 67 46 chr9 29553724 29553793 -88308834 - L1MA8 LINE L1 -223 6068 6002 427 248 29 15 chr9 29555088 29555225 -88307402 + L1ME LINE L1 5546 5684 -437 311 226 34 20 chr9 29555384 29555524 -88307103 + L1ME LINE L1 5313 5453 -668 182 335 4 29 chr9 29556057 29556185 -88306442 + MIR SINE MIR 2 92 -116 854 280 14 0 chr9 29556186 29556393 -88306234 - MER63A DNA MER1_type 0 210 1 6294 82 8 1 chr9 29557040 29557901 -88304726 - L1PA8A LINE L1 0 6131 5265 239 143 41 0 chr9 29558437 29558486 -88304141 + CT-rich Low_complexity Low_complexity 4 54 0 436 287 127 33 chr9 29558761 29558942 -88303685 + MIR SINE MIR 3 206 -56 880 303 71 12 chr9 29559009 29559349 -88303278 + LTR33 LTR ERVL 4 363 -158 23 54 0 0 chr9 29560240 29560277 -88302350 + AT_rich Low_complexity Low_complexity 1 37 0 243 0 0 0 chr9 29560778 29560805 -88301822 + (TG)n Simple_repeat Simple_repeat 2 28 0 21 36 0 0 chr9 29560884 29560912 -88301715 + AT_rich Low_complexity Low_complexity 1 28 0 1811 126 23 0 chr9 29562034 29562295 -88300332 + AluSx SINE Alu 1 267 -45 200 222 0 0 chr9 29562947 29562992 -88299635 + (TA)n Simple_repeat Simple_repeat 1 45 0 245 331 0 24 chr9 29563037 29563161 -88299466 + GA-rich Low_complexity Low_complexity 2 122 0 253 307 79 79 chr9 29564000 29564228 -88298399 + MIR SINE MIR 34 261 -1 2464 42 3 0 chr9 29564350 29564660 -88297967 + L1PA4 LINE L1 5845 6155 0 297 0 0 0 chr9 29565498 29565531 -88297096 + (TG)n Simple_repeat Simple_repeat 1 33 0 346 235 61 0 chr9 29565636 29565734 -88296893 - MIR3 SINE MIR 0 208 105 414 228 14 17 chr9 29565753 29566046 -88296581 + GA-rich Low_complexity Low_complexity 1 292 0 185 0 0 39 chr9 29566051 29566077 -88296550 + (GGAAA)n Simple_repeat Simple_repeat 5 29 0 2044 211 48 80 chr9 29567209 29567829 -88294798 - L1MB5 LINE L1 0 6183 5515 1568 109 4 21 chr9 29567829 29568067 -88294560 - L1PB3 LINE L1 -7 6147 5914 2044 211 48 80 chr9 29568067 29568277 -88294350 - L1MB5 LINE L1 -668 5515 5300 1040 208 15 30 chr9 29568275 29568539 -88294088 + L1 LINE L1 4123 4382 -1764 * 2407 151 7 20 chr9 29568685 29569140 -88293487 + Tigger2 DNA MER2_type 1 2718 0 277 340 11 0 chr9 29569369 29569463 -88293164 + MIR3 SINE MIR 60 154 -54 36 40 0 0 chr9 29569794 29569844 -88292783 + AT_rich Low_complexity Low_complexity 1 50 0 22 35 0 0 chr9 29570231 29570260 -88292367 + AT_rich Low_complexity Low_complexity 1 29 0 311 318 53 25 chr9 29570700 29570945 -88291682 + L1ME4a LINE L1 5643 5894 -227 393 337 69 29 chr9 29571168 29571414 -88291213 + L2 LINE L2 2621 2876 -438 197 208 104 0 chr9 29571691 29571739 -88290888 + L2 LINE L2 3261 3313 0 278 370 90 32 chr9 29573514 29573792 -88288835 + L2 LINE L2 3020 3313 0 360 222 113 113 chr9 29574106 29574153 -88288474 + MIR SINE MIR 57 103 -159 2125 117 0 0 chr9 29574153 29574452 -88288175 - AluSg SINE Alu -9 301 3 360 222 113 113 chr9 29574452 29574598 -88288029 + MIR SINE MIR 102 250 -12 240 287 128 49 chr9 29575240 29575404 -88287223 - MIR SINE MIR -71 191 15 26 30 0 0 chr9 29575694 29575727 -88286900 + AT_rich Low_complexity Low_complexity 1 33 0 4589 199 37 25 chr9 29576989 29577420 -88285207 + L1MB3 LINE L1 4275 4699 -1484 887 276 44 0 chr9 29577420 29577645 -88284982 + MER8 DNA MER2_type 4 238 -1 4589 199 37 25 chr9 29577645 29579084 -88283543 + L1MB3 LINE L1 4699 6176 -7 1069 294 58 27 chr9 29580025 29580508 -88282119 + MLT1H LTR MaLR 7 547 -2 463 349 68 5 chr9 29580703 29580895 -88281732 + MIR SINE MIR 2 205 -57 438 164 39 8 chr9 29581109 29581237 -88281390 + (TA)n Simple_repeat Simple_repeat 1 132 0 437 273 148 0 chr9 29581238 29581414 -88281213 - MIR SINE MIR -59 203 2 207 278 21 93 chr9 29582996 29583093 -88279534 - L2 LINE L2 -6 3266 3177 486 314 126 18 chr9 29583286 29583509 -88279118 - MIR SINE MIR -13 249 3 339 318 58 40 chr9 29584589 29584762 -88277865 + MIR SINE MIR 15 190 -72 189 0 0 0 chr9 29585987 29586008 -88276619 + (TG)n Simple_repeat Simple_repeat 1 21 0 1445 264 55 66 chr9 29586557 29586907 -88275720 - MLT1F1 LTR MaLR -2 565 197 378 0 0 0 chr9 29586907 29586949 -88275678 + (GA)n Simple_repeat Simple_repeat 1 42 0 1445 264 55 66 chr9 29586949 29587144 -88275483 - MLT1F1 LTR MaLR -370 197 1 34 65 0 0 chr9 29588250 29588312 -88274315 + AT_rich Low_complexity Low_complexity 1 62 0 4097 93 44 58 chr9 29589448 29589792 -88272835 + L1PB2 LINE L1 5433 5780 -371 303 28 0 0 chr9 29589792 29589828 -88272799 + (TC)n Simple_repeat Simple_repeat 2 37 0 4097 93 44 58 chr9 29589828 29590212 -88272415 + L1PB2 LINE L1 5780 6151 0 818 198 6 73 chr9 29590233 29590410 -88272217 + LTR69 LTR ERVL 322 486 -102 22 0 0 0 chr9 29592097 29592119 -88270508 + AT_rich Low_complexity Low_complexity 1 22 0 485 279 86 41 chr9 29592241 29592299 -88270328 - LTR33 LTR ERVL -7 514 460 2376 50 0 0 chr9 29592299 29592634 -88269993 - AluY SINE Alu 0 335 1 485 279 86 41 chr9 29592634 29592843 -88269784 - LTR33 LTR ERVL -61 460 234 2480 206 27 24 chr9 29592887 29593400 -88269227 + MLT2B3 LTR ERVL 1 518 -36 525 115 0 0 chr9 29593400 29593487 -88269140 + (CA)n Simple_repeat Simple_repeat 2 88 0 2480 206 27 24 chr9 29593487 29593522 -88269105 + MLT2B3 LTR ERVL 518 551 -3 2535 206 47 4 chr9 29594056 29594550 -88268077 + MLT2B2 LTR ERVL 1 515 0 228 134 0 90 chr9 29594682 29594749 -88267878 - LTR66 LTR ERVL -152 458 398 342 174 59 14 chr9 29594764 29595106 -88267521 + (TA)n Simple_repeat Simple_repeat 1 357 0 229 215 0 97 chr9 29595115 29595208 -88267419 + L1MC4 LINE L1 6659 6742 -1300 751 269 152 25 chr9 29595213 29595309 -88267318 + MLT1I LTR MaLR 3 85 -324 1763 167 162 8 chr9 29595309 29595680 -88266947 + MSTA LTR MaLR 1 428 0 751 269 152 25 chr9 29595680 29595944 -88266683 + MLT1I LTR MaLR 85 409 0 23 0 0 0 chr9 29596028 29596051 -88266576 + AT_rich Low_complexity Low_complexity 1 23 0 704 210 90 23 chr9 29596812 29597081 -88265546 + MSTD LTR MaLR 1 303 -62 342 0 0 0 chr9 29597129 29597167 -88265460 + (T)n Simple_repeat Simple_repeat 1 38 0 232 315 228 20 chr9 29597333 29597482 -88265145 - MER5A DNA MER1_type -3 186 7 240 206 20 59 chr9 29598114 29598216 -88264411 - L1ME4a LINE L1 -47 6074 5977 455 148 0 11 chr9 29598268 29598356 -88264271 + L1MA7 LINE L1 6203 6289 -2 4829 203 103 91 chr9 29599162 29600895 -88261732 + MER52A LTR ERV1 3 1755 0 318 222 173 0 chr9 29600920 29601001 -88261626 - MIR SINE MIR -155 107 13 227 227 182 45 chr9 29602271 29602359 -88260268 + MIR SINE MIR 8 107 -155 620 317 77 84 chr9 29602384 29603006 -88259621 + L2 LINE L2 2462 3073 -199 1809 202 34 8 chr9 29603068 29603424 -88259203 + MLT1A1 LTR MaLR 1 365 0 324 180 0 0 chr9 29603449 29603499 -88259128 + FLAM SINE Alu 75 124 -9 350 324 227 45 chr9 29603685 29604148 -88258479 + L3 LINE CR1 364 910 -667 378 0 0 0 chr9 29604910 29604952 -88257675 + (TG)n Simple_repeat Simple_repeat 2 43 0 295 360 70 17 chr9 29606046 29606218 -88256409 + MER5A DNA MER1_type 1 181 -8 373 272 19 19 chr9 29608260 29608422 -88254205 - MER103 DNA DNA -2 164 3 193 324 101 73 chr9 29608562 29608781 -88253846 - L2 LINE L2 -218 3054 2830 393 299 109 0 chr9 29609014 29609161 -88253466 - L2 LINE L2 -1 3312 3150 184 400 11 0 chr9 29609482 29609577 -88253050 - L2 LINE L2 -557 2757 2662 321 253 0 13 chr9 29609594 29609673 -88252954 - MARNA DNA Mariner -123 463 386 205 146 42 0 chr9 29610444 29610492 -88252135 + (TA)n Simple_repeat Simple_repeat 2 51 0 197 408 11 45 chr9 29611540 29611807 -88250820 + L2 LINE L2 2714 2971 -343 391 307 167 5 chr9 29611973 29612165 -88250462 - MIR SINE MIR -13 249 27 1313 165 34 88 chr9 29613305 29613602 -88249025 - AluJo SINE Alu -25 287 7 185 245 0 20 chr9 29615167 29615216 -88247411 - MIR SINE MIR -59 203 156 181 152 121 0 chr9 29615346 29615379 -88247248 - L2 LINE L2 -9 3263 3227 207 357 47 62 chr9 29615477 29615606 -88247021 + L2 LINE L2 3146 3272 0 453 284 39 44 chr9 29617735 29617939 -88244688 - MIR SINE MIR -54 208 6 216 0 0 0 chr9 29618292 29618316 -88244311 + (A)n Simple_repeat Simple_repeat 1 24 0 254 333 15 59 chr9 29618557 29618692 -88243935 - MIR3 SINE MIR -11 197 69 317 301 9 18 chr9 29618914 29619027 -88243600 - MER94 DNA DNA -15 119 8 6325 131 27 9 chr9 29620665 29620747 -88241880 + L1MA3 LINE L1 5069 5148 -1157 1993 217 150 43 chr9 29620747 29621493 -88241134 - LTR1B LTR ERV1 0 826 1 6325 131 27 9 chr9 29621493 29622628 -88239999 + L1MA3 LINE L1 5148 6305 0 2200 78 0 7 chr9 29622921 29623204 -88239423 - AluY SINE Alu -30 281 1 36 23 0 0 chr9 29623515 29623558 -88239069 + AT_rich Low_complexity Low_complexity 1 43 0 252 264 14 14 chr9 29624460 29624532 -88238095 + L1M4c LINE L1 -782 4294966585 -7094 4219 231 19 28 chr9 29624641 29625875 -88236752 + L1M4c LINE L1 777 1904 -4480 339 222 30 20 chr9 29625920 29626019 -88236608 + L1M4c LINE L1 2036 2135 -4249 603 194 15 0 chr9 29626020 29626154 -88236473 + L1MB3 LINE L1 6048 6183 0 350 183 63 7 chr9 29626727 29626869 -88235758 + (TA)n Simple_repeat Simple_repeat 1 150 0 1168 209 105 51 chr9 29627019 29627449 -88235178 - MSTB2 LTR MaLR 0 457 5 586 244 118 33 chr9 29627456 29627726 -88234901 + L1ME3A LINE L1 5406 5698 -464 929 240 65 25 chr9 29627755 29628080 -88234547 + L1ME3A LINE L1 5810 6147 -23 273 57 0 0 chr9 29629289 29629324 -88233303 + (CA)n Simple_repeat Simple_repeat 1 35 0 22 0 0 0 chr9 29629924 29629946 -88232681 + AT_rich Low_complexity Low_complexity 1 22 0 602 254 133 21 chr9 29630665 29630944 -88231683 + MER5C DNA MER1_type 15 324 0 243 319 80 9 chr9 29631292 29631405 -88231222 + MIR SINE MIR 94 214 -48 276 331 62 19 chr9 29631453 29631613 -88231014 - MIR SINE MIR -18 244 78 2419 28 0 0 chr9 29632148 29632452 -88230175 - AluY SINE Alu 0 304 1 186 365 0 0 chr9 29633029 29633092 -88229535 + L2 LINE L2 2262 2324 -990 * 688 289 72 20 chr9 29633089 29633338 -88229289 - MIR SINE MIR 0 262 1 548 326 179 18 chr9 29633342 29633799 -88228828 + L2 LINE L2 2330 2860 -454 239 297 14 14 chr9 29633880 29633954 -88228673 + L2 LINE L2 2989 3062 -251 378 307 117 6 chr9 29634236 29634399 -88228228 - MER5A DNA MER1_type 0 189 9 251 219 122 12 chr9 29634956 29635038 -88227589 - MIR SINE MIR 0 262 172 342 0 0 0 chr9 29635723 29635761 -88226866 + (TG)n Simple_repeat Simple_repeat 1 38 0 468 139 0 0 chr9 29635761 29635840 -88226787 + (TA)n Simple_repeat Simple_repeat 1 79 0 224 363 41 47 chr9 29637102 29637273 -88225354 - MIR SINE MIR -67 195 26 257 0 30 0 chr9 29637480 29637513 -88225114 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 7640 24 0 0 chr9 29637513 29638568 -88224059 - L1PA3 LINE L1 -13 6142 5088 2050 36 0 0 chr9 29638568 29638815 -88223812 + L1PA3 LINE L1 4837 5083 -1063 190 318 63 0 chr9 29640055 29640118 -88222509 - L3 LINE CR1 -5 1572 1506 856 263 42 70 chr9 29640192 29640504 -88222123 - L3 LINE CR1 -179 1398 1096 374 308 82 14 chr9 29640811 29640957 -88221670 + MIR3 SINE MIR 20 175 -33 205 368 38 38 chr9 29641146 29641279 -88221348 - L2 LINE L2 -8 3264 3132 258 333 0 0 chr9 29642394 29642466 -88220161 + (TATG)n Simple_repeat Simple_repeat 2 73 0 24 0 0 0 chr9 29642664 29642688 -88219939 + AT_rich Low_complexity Low_complexity 1 24 0 28 48 0 0 chr9 29644241 29644283 -88218344 + AT_rich Low_complexity Low_complexity 1 42 0 516 321 65 11 chr9 29644341 29644525 -88218102 + MIR SINE MIR 1 194 -68 1507 145 4 4 chr9 29645119 29645347 -88217280 - AluSx SINE Alu -84 228 1 2125 109 7 7 chr9 29645495 29645798 -88216829 + AluSc SINE Alu 1 303 -6 283 292 46 82 chr9 29646169 29646364 -88216263 + MER5A DNA MER1_type 2 189 0 243 286 78 13 chr9 29646364 29646441 -88216186 - MIR SINE MIR -153 109 28 456 344 20 29 chr9 29646587 29646831 -88215796 + L1MC/D LINE L1 5496 5737 -2071 1189 224 60 10 chr9 29646957 29647405 -88215222 - MLT1D LTR MaLR 0 505 1 180 0 0 0 chr9 29648710 29648730 -88213897 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3197 106 4 4 chr9 29649499 29649952 -88212675 + MLT2A2 LTR ERVL 1 453 0 392 120 13 13 chr9 29650010 29650085 -88212542 + MADE1 DNA Mariner 6 80 0 7142 53 3 0 chr9 29650097 29651523 -88211104 - L1PA5 LINE L1 -4 6150 4725 22819 77 2 0 chr9 29651523 29654683 -88207944 - L1PA5 LINE L1 -2982 3164 1 25 0 0 0 chr9 29654797 29654822 -88207805 + AT_rich Low_complexity Low_complexity 1 25 0 479 307 104 10 chr9 29655407 29655599 -88207028 + MIR SINE MIR 41 250 -12 2309 96 0 0 chr9 29706631 29706924 -88155703 - AluSx SINE Alu -11 301 9 31 58 0 0 chr9 29706930 29706982 -88155645 + AT_rich Low_complexity Low_complexity 1 52 0 306 323 30 37 chr9 29707292 29707456 -88155171 + MIR SINE MIR 79 241 -21 342 0 0 0 chr9 29708815 29708853 -88153774 + (ATG)n Simple_repeat Simple_repeat 2 39 0 2025 128 0 0 chr9 29708854 29709136 -88153491 - AluSx SINE Alu -30 282 1 199 271 57 14 chr9 29710048 29710118 -88152509 + MIR SINE MIR 182 254 -8 23 0 0 0 chr9 29710132 29710155 -88152472 + AT_rich Low_complexity Low_complexity 1 23 0 2153 158 30 32 chr9 29710722 29711160 -88151467 - L1PA15 LINE L1 -5 6160 5724 24 32 0 0 chr9 29712372 29712403 -88150224 + AT_rich Low_complexity Low_complexity 1 31 0 36 40 0 0 chr9 29712415 29712465 -88150162 + AT_rich Low_complexity Low_complexity 1 50 0 22 0 0 0 chr9 29712738 29712760 -88149867 + AT_rich Low_complexity Low_complexity 1 22 0 30 27 0 0 chr9 29713417 29713454 -88149173 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr9 29714021 29714042 -88148585 + AT_rich Low_complexity Low_complexity 1 21 0 312 333 17 64 chr9 29714669 29714753 -88147874 + L3 LINE CR1 1092 1178 -399 1957 154 7 0 chr9 29714753 29715058 -88147569 - AluSx SINE Alu -3 309 3 312 333 17 64 chr9 29715058 29715207 -88147420 + L3 LINE CR1 1178 1314 -263 25 31 0 0 chr9 29715574 29715606 -88147021 + AT_rich Low_complexity Low_complexity 1 32 0 278 312 115 6 chr9 29715732 29715889 -88146738 + MIR SINE MIR 13 186 -76 2377 77 3 0 chr9 29716330 29716630 -88145997 + AluSq SINE Alu 1 301 -12 212 281 220 83 chr9 29717431 29717483 -88145144 - L2 LINE L2 0 3313 3270 345 109 0 0 chr9 29717483 29717538 -88145089 + (TA)n Simple_repeat Simple_repeat 2 56 0 212 281 220 83 chr9 29717538 29717798 -88144829 - L2 LINE L2 -43 3270 2958 1981 134 0 7 chr9 29719045 29719350 -88143277 + AluSx SINE Alu 1 303 -9 678 293 40 0 chr9 29719734 29719908 -88142719 - MIR SINE MIR -9 253 73 825 281 96 65 chr9 29721022 29721513 -88141114 - MLT1H LTR MaLR -32 517 12 21 0 0 0 chr9 29721984 29722005 -88140622 + AT_rich Low_complexity Low_complexity 1 21 0 210 244 17 61 chr9 29722116 29722231 -88140396 + T-rich Low_complexity Low_complexity 1 110 0 251 287 67 70 chr9 29722494 29722767 -88139860 - L1M4c LINE L1 -4608 1955 1682 1741 177 30 7 chr9 29722767 29723072 -88139555 + AluJo SINE Alu 1 312 0 251 287 67 70 chr9 29723072 29723341 -88139286 - L1M4c LINE L1 -4881 1682 1265 808 222 87 14 chr9 29723448 29723723 -88138904 - L1MC4 LINE L1 -13 8029 7735 266 153 119 17 chr9 29723727 29723786 -88138841 - MLT1F LTR MaLR 0 542 441 4531 249 27 9 chr9 29723811 29725198 -88137429 + L1M4 LINE L1 2170 3581 -2565 558 208 27 7 chr9 29725201 29725350 -88137277 + L1MB3 LINE L1 6032 6183 0 1104 256 193 12 chr9 29725367 29725797 -88136830 - MLT1F1 LTR MaLR -52 515 8 1301 217 122 60 chr9 29725802 29726285 -88136342 - L1MC4 LINE L1 -306 7736 7224 2424 124 8 21 chr9 29726591 29726971 -88135656 - THE1C LTR MaLR 0 375 1 1729 120 4 4 chr9 29726971 29727229 -88135398 - THE1C-int LTR MaLR 0 1580 1323 922 159 16 23 chr9 29727229 29727457 -88135170 - THE1C LTR MaLR -71 293 1 315 335 27 8 chr9 29727622 29727811 -88134816 - MIR SINE MIR -17 245 9 293 345 176 7 chr9 29727891 29728033 -88134594 - MIR3 SINE MIR -12 196 31 375 261 73 111 chr9 29729041 29729382 -88133245 + MLT1I LTR MaLR 46 373 -36 2101 99 27 3 chr9 29731315 29731607 -88131020 - AluY SINE Alu -12 299 1 22 0 0 0 chr9 29732726 29732748 -88129879 + AT_rich Low_complexity Low_complexity 1 22 0 340 302 201 0 chr9 29733009 29733168 -88129459 + MIR SINE MIR 8 198 -64 204 211 0 0 chr9 29733211 29733249 -88129378 + (CTA)n Simple_repeat Simple_repeat 1 38 0 240 111 0 0 chr9 29734604 29734640 -88127987 + (A)n Simple_repeat Simple_repeat 1 36 0 425 352 28 20 chr9 29736393 29736643 -88125984 - MIR SINE MIR -2 260 9 22 0 0 0 chr9 29737649 29737671 -88124956 + AT_rich Low_complexity Low_complexity 1 22 0 6041 152 26 18 chr9 29737687 29739555 -88123072 - L1MA2 LINE L1 -12 6292 4408 25 31 0 0 chr9 29740393 29740425 -88122202 + AT_rich Low_complexity Low_complexity 1 32 0 213 39 0 0 chr9 29740426 29740452 -88122175 + (CA)n Simple_repeat Simple_repeat 1 26 0 2411 55 0 10 chr9 29741180 29741472 -88121155 + AluY SINE Alu 1 289 -22 35204 49 2 1 chr9 29741473 29746703 -88115924 + L1PA5 LINE L1 934 6165 0 23 54 0 0 chr9 29746870 29746907 -88115720 + AT_rich Low_complexity Low_complexity 1 37 0 468 257 139 46 chr9 29747289 29747526 -88115101 - MLT1K LTR MaLR -10 578 320 2217 125 3 0 chr9 29747730 29748042 -88114585 + AluSq SINE Alu 1 313 0 234 296 51 41 chr9 29748649 29748747 -88113880 - L2 LINE L2 0 3313 3215 2511 119 19 41 chr9 29749210 29749602 -88113025 + MLT2A1 LTR ERVL 1 385 -59 288 0 0 0 chr9 29749602 29749634 -88112993 + (TC)n Simple_repeat Simple_repeat 2 33 0 2511 119 19 41 chr9 29749634 29749654 -88112973 + MLT2A1 LTR ERVL 385 404 -40 594 143 28 12 chr9 29749665 29749995 -88112632 + (TA)n Simple_repeat Simple_repeat 1 335 0 264 53 0 26 chr9 29750008 29750046 -88112581 + MLT2A1 LTR ERVL 417 453 0 274 291 152 89 chr9 29750342 29750644 -88111983 + L2 LINE L2 2952 3272 0 278 344 27 38 chr9 29750653 29750839 -88111788 + MER117 DNA MER1_type 10 193 -4 1495 70 25 0 chr9 29750951 29751152 -88111475 + L1PA5 LINE L1 4829 5034 -1112 1486 62 5 0 chr9 29751152 29751397 -88111230 + L1PA5 LINE L1 5944 6193 0 482 243 15 15 chr9 29751434 29751570 -88111057 - L1MD2 LINE L1 -13 6346 6211 995 26 0 0 chr9 29752295 29752412 -88110215 - L1PA2 LINE L1 -2 6153 6037 1868 26 4 0 chr9 29752412 29752638 -88109989 + L1PA2 LINE L1 5821 6047 -108 249 311 56 0 chr9 29753419 29753509 -88109118 + MIR SINE MIR 156 250 -12 22 0 0 0 chr9 29754576 29754598 -88108029 + AT_rich Low_complexity Low_complexity 1 22 0 519 326 120 13 chr9 29754825 29755141 -88107486 + L1ME LINE L1 61 410 -5986 554 282 91 18 chr9 29755487 29755827 -88106800 + L1ME LINE L1 810 1174 -5222 1207 246 153 13 chr9 29755859 29756498 -88106129 + L1ME LINE L1 4901 5681 -552 221 0 35 0 chr9 29756498 29756527 -88106100 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1207 246 153 13 chr9 29756527 29756617 -88106010 + L1ME LINE L1 5681 5757 -476 21 36 0 0 chr9 29756621 29756649 -88105978 + AT_rich Low_complexity Low_complexity 1 28 0 497 230 54 0 chr9 29756652 29756863 -88105764 + L1ME2 LINE L1 2315 5888 -347 23 33 0 0 chr9 29756891 29756921 -88105706 + AT_rich Low_complexity Low_complexity 1 30 0 4486 190 12 10 chr9 29756941 29757761 -88104866 + L1MA2 LINE L1 14 835 -6730 * 9157 146 23 24 chr9 29757759 29760494 -88102133 + L1MA2 LINE L1 4989 7723 0 346 151 35 81 chr9 29760530 29760616 -88102011 + Tigger1 DNA MER2_type 70 151 -2267 * 1198 136 41 18 chr9 29760613 29760834 -88101793 + Tigger1 DNA MER2_type 2192 2417 -1 385 194 102 174 chr9 29760905 29761198 -88101429 + L1ME2 LINE L1 5906 6177 -58 2223 97 0 0 chr9 29761524 29761835 -88100792 - L1PA13 LINE L1 -4 6159 5849 266 287 20 10 chr9 29763509 29763610 -88099017 - MIR SINE MIR -12 250 149 266 220 0 0 chr9 29763647 29763697 -88098930 - L2 LINE L2 0 3272 3223 753 325 114 20 chr9 29763851 29764359 -88098268 - L2 LINE L2 -435 2879 2324 2368 43 0 0 chr9 29764925 29765229 -88097398 + AluY SINE Alu 3 306 0 971 226 83 43 chr9 29766346 29766688 -88095939 - L1ME3A LINE L1 -5 6165 5811 22 35 0 0 chr9 29766949 29766978 -88095649 + AT_rich Low_complexity Low_complexity 1 29 0 434 267 35 0 chr9 29766995 29767111 -88095516 - L2 LINE L2 -3 3310 3191 408 266 143 19 chr9 29768455 29768609 -88094018 + MER58 DNA MER1_type 1 173 -2247 211 250 0 19 chr9 29769044 29769152 -88093475 + (TA)n Simple_repeat Simple_repeat 2 107 0 1867 141 35 40 chr9 29769288 29769665 -88092962 - THE1C LTR MaLR 0 375 1 2474 157 71 7 chr9 29769671 29770105 -88092522 - THE1C-int LTR MaLR -5 1575 1114 314 190 0 0 chr9 29770102 29770160 -88092467 + L1MA9 LINE L1 5722 5779 -521 * 1249 239 17 3 chr9 29770160 29770449 -88092178 + AluJo SINE Alu 5 297 -15 378 62 0 0 chr9 29770451 29770499 -88092128 + AluY SINE Alu 3 50 -258 1500 78 0 0 chr9 29770499 29770734 -88091893 + AluY SINE Alu 102 311 0 2407 166 33 55 chr9 29770764 29771146 -88091481 + L1MA9 LINE L1 5783 6151 -161 198 0 0 0 chr9 29771146 29771168 -88091459 + (CA)n Simple_repeat Simple_repeat 1 22 0 2407 166 33 55 chr9 29771168 29771327 -88091300 + L1MA9 LINE L1 6151 6312 0 1098 232 27 59 chr9 29771759 29772134 -88090493 - MLT1A1 LTR MaLR 0 365 3 502 335 116 61 chr9 29772431 29773136 -88089491 - L1MC4a LINE L1 -161 6009 5266 21 57 0 0 chr9 29773327 29773362 -88089265 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr9 29774202 29774237 -88088390 + AT_rich Low_complexity Low_complexity 1 35 0 296 282 56 80 chr9 29774694 29774907 -88087720 + MLT1K LTR MaLR 166 373 -215 493 293 145 4 chr9 29775138 29775387 -88087240 - Charlie7 DNA MER1_type -2292 320 37 905 213 33 9 chr9 29776587 29776798 -88085829 - MER58A DNA MER1_type -8 216 1 821 210 93 40 chr9 29777162 29777462 -88085165 - MER33 DNA MER1_type -7 317 2 284 274 301 27 chr9 29777462 29777648 -88084979 + MIR SINE MIR 8 244 -18 322 247 24 12 chr9 29779131 29779216 -88083411 - L2 LINE L2 0 3313 3228 207 0 0 0 chr9 29780190 29780213 -88082414 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 725 245 101 32 chr9 29780260 29780538 -88082089 + LTR16A1 LTR ERVL 159 455 -2 26 0 0 0 chr9 29781881 29781907 -88080720 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr9 29782685 29782706 -88079921 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr9 29782960 29782983 -88079644 + AT_rich Low_complexity Low_complexity 1 23 0 204 122 0 0 chr9 29784058 29784099 -88078528 + (T)n Simple_repeat Simple_repeat 1 41 0 1990 136 0 0 chr9 29784453 29784739 -88077888 + AluSx SINE Alu 1 286 -26 336 94 0 0 chr9 29784739 29784792 -88077835 + (CATA)n Simple_repeat Simple_repeat 2 54 0 204 364 23 11 chr9 29788754 29788842 -88073785 + MIR SINE MIR 13 101 -161 249 211 19 149 chr9 29789147 29789308 -88073319 + MIR SINE MIR 122 261 -1 744 327 75 42 chr9 29789760 29790212 -88072415 + MLT1K LTR MaLR 101 567 -21 257 287 96 11 chr9 29790286 29790380 -88072247 + MIR SINE MIR 107 208 -54 26 0 0 0 chr9 29791188 29791214 -88071413 + AT_rich Low_complexity Low_complexity 1 26 0 12958 32 0 3 chr9 29791331 29793419 -88069208 - L1PA4 LINE L1 -256 5899 3817 579 286 111 24 chr9 29795625 29796002 -88066625 + HAL1 LINE L1 2097 2506 -1 1646 164 124 0 chr9 29796449 29796772 -88065855 - MER47A DNA MER2_type -3 363 1 289 331 30 15 chr9 29796779 29796912 -88065715 + L1MEd LINE L1 455 589 -5530 280 217 86 59 chr9 29796914 29797066 -88065561 + MER53 DNA DNA 1 156 -33 690 0 0 34 chr9 29797166 29797255 -88065372 + AluY SINE Alu 218 303 -8 1232 239 66 37 chr9 29798026 29798407 -88064220 - MSTD LTR MaLR 0 396 5 189 367 135 32 chr9 29803273 29803644 -88058983 + L2 LINE L2 2824 3232 -40 3187 169 38 63 chr9 29803752 29804496 -88058131 - LTR8A LTR ERV1 0 727 3 380 204 0 0 chr9 29804625 29804713 -88057914 + L1PB1 LINE L1 6060 6147 -4 2206 199 2 7 chr9 29805021 29805437 -88057190 + MER47B DNA MER2_type 5 418 0 240 35 0 0 chr9 29805469 29805498 -88057129 + (TG)n Simple_repeat Simple_repeat 2 30 0 2120 156 8 77 chr9 29805715 29805999 -88056628 - L1PA16 LINE L1 -6 6160 5923 2110 95 20 3 chr9 29805999 29806304 -88056323 - AluSg SINE Alu 0 310 1 2120 156 8 77 chr9 29806304 29806514 -88056113 - L1PA16 LINE L1 -243 5923 5700 303 287 88 22 chr9 29806533 29806669 -88055958 - MIR3 SINE MIR -32 176 32 302 305 48 19 chr9 29809590 29809695 -88052932 + L2 LINE L2 3204 3311 -2 552 310 39 0 chr9 29809794 29809949 -88052678 + MIR SINE MIR 49 209 -53 4892 169 29 15 chr9 29811480 29812469 -88050158 - L1MA9 LINE L1 0 6312 5310 1386 263 21 5 chr9 29812504 29812926 -88049701 - L1M2 LINE L1 -4171 2678 2250 1336 171 4 12 chr9 29812943 29813200 -88049427 - L1PA13 LINE L1 -15 6148 5894 699 236 12 19 chr9 29813207 29813368 -88049259 - L1M2 LINE L1 -5979 800 641 288 0 0 0 chr9 29813599 29813631 -88048996 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 3665 176 3 11 chr9 29813631 29814283 -88048344 - L1PA16 LINE L1 -24 6142 5496 2333 46 0 11 chr9 29815579 29815863 -88046764 + AluY SINE Alu 8 288 -23 28 0 0 0 chr9 29815910 29815938 -88046689 + AT_rich Low_complexity Low_complexity 1 28 0 2037 86 11 4 chr9 29815944 29816213 -88046414 + AluY SINE Alu 4 274 -37 784 206 111 5 chr9 29816511 29816700 -88045927 + MER3 DNA MER1_type 1 209 0 492 301 0 47 chr9 29818128 29818280 -88044347 + MIR SINE MIR 15 154 -108 1989 124 3 0 chr9 29818280 29818600 -88044027 + AluSx SINE Alu 1 321 0 492 301 0 47 chr9 29818600 29818655 -88043972 + MIR SINE MIR 154 210 -52 219 88 0 0 chr9 29818934 29818968 -88043659 + (T)n Simple_repeat Simple_repeat 1 34 0 313 247 0 52 chr9 29819647 29819744 -88042883 - L1MC4 LINE L1 -1339 6703 6612 366 97 80 0 chr9 29819748 29819861 -88042766 + (TA)n Simple_repeat Simple_repeat 1 122 0 26 0 0 0 chr9 29819899 29819925 -88042702 + AT_rich Low_complexity Low_complexity 1 26 0 1790 158 0 27 chr9 29820451 29820748 -88041879 + AluJb SINE Alu 1 289 -23 26 30 0 0 chr9 29820748 29820781 -88041846 + AT_rich Low_complexity Low_complexity 1 33 0 1279 253 36 39 chr9 29820849 29821264 -88041363 - MLT2D LTR ERVL 0 414 1 889 328 70 37 chr9 29822699 29823214 -88039413 + HAL1 LINE L1 215 746 -1761 35097 37 1 0 chr9 29823268 29828348 -88034279 - L1PA2 LINE L1 -2 6153 1067 1361 271 147 71 chr9 29828350 29829906 -88032721 + HAL1 LINE L1 833 2507 0 231 264 23 11 chr9 29830630 29830717 -88031910 - L1ME LINE L1 -297 5873 5786 635 247 98 51 chr9 29830790 29831219 -88031408 + L1MEd LINE L1 702 1150 -4969 390 300 122 27 chr9 29831303 29831566 -88031061 + L1MEd LINE L1 1282 1569 -4741 361 300 76 34 chr9 29831782 29832086 -88030541 + L1ME LINE L1 5468 5777 -401 2186 124 0 0 chr9 29832695 29833002 -88029625 - AluSc SINE Alu -2 307 1 233 287 62 31 chr9 29833353 29833482 -88029145 + LTR67 LTR ERVL 410 542 -15 3571 156 98 3 chr9 29834573 29835219 -88027408 + MER39 LTR ERV1 1 707 0 468 115 10 7 chr9 29835305 29835393 -88027234 - L1MA8 LINE L1 -326 5976 5888 266 350 43 29 chr9 29835477 29835617 -88027010 + MIR SINE MIR 1 142 -120 204 299 27 102 chr9 29836335 29836482 -88026145 + MIR SINE MIR 117 252 -10 * 234 269 51 26 chr9 29836480 29836558 -88026069 + MIR3 SINE MIR 105 184 -24 211 91 55 36 chr9 29836631 29836686 -88025941 + (TATAA)n Simple_repeat Simple_repeat 2 57 0 23 0 0 0 chr9 29836687 29836710 -88025917 + AT_rich Low_complexity Low_complexity 1 23 0 1867 168 7 0 chr9 29837194 29837503 -88025124 - AluSq SINE Alu -2 311 1 252 365 61 33 chr9 29838569 29838750 -88023877 + MER5A DNA MER1_type 3 188 -1 627 307 130 18 chr9 29839046 29839447 -88023180 + LTR16A LTR ERVL 3 448 -2 1660 174 0 7 chr9 29840864 29841139 -88021488 + AluJb SINE Alu 1 273 -39 330 67 0 0 chr9 29841139 29841184 -88021443 + (GA)n Simple_repeat Simple_repeat 1 45 0 373 315 56 0 chr9 29842071 29842179 -88020448 - L2 LINE L2 -3 3269 3156 22 56 0 0 chr9 29842448 29842484 -88020143 + AT_rich Low_complexity Low_complexity 1 36 0 1124 189 115 72 chr9 29842543 29842892 -88019735 + MLT1A1 LTR MaLR 1 364 -1 216 41 0 82 chr9 29843160 29843209 -88019418 + (TTTTA)n Simple_repeat Simple_repeat 5 49 0 275 306 41 8 chr9 29843303 29843424 -88019203 - L1MEc LINE L1 -4742 1568 1255 21 0 0 0 chr9 29843541 29843562 -88019065 + AT_rich Low_complexity Low_complexity 1 21 0 334 280 60 60 chr9 29843586 29843836 -88018791 - L1MEc LINE L1 -4898 1221 972 1896 222 24 17 chr9 29844109 29844573 -88018054 - MLT1C LTR MaLR 0 467 1 29 60 0 0 chr9 29845370 29845420 -88017207 + AT_rich Low_complexity Low_complexity 1 50 0 302 221 47 23 chr9 29845451 29845537 -88017090 - L1MEc LINE L1 -5785 334 247 233 256 12 0 chr9 29845680 29845762 -88016865 + (TG)n Simple_repeat Simple_repeat 1 83 0 411 311 61 20 chr9 29846133 29846429 -88016198 - L1ME4a LINE L1 -237 5884 5577 180 0 0 0 chr9 29846726 29846746 -88015881 + (CA)n Simple_repeat Simple_repeat 1 20 0 21 71 0 0 chr9 29846747 29846789 -88015838 + AT_rich Low_complexity Low_complexity 1 42 0 29 60 0 0 chr9 29846938 29846988 -88015639 + AT_rich Low_complexity Low_complexity 1 50 0 210 37 0 0 chr9 29847419 29847446 -88015181 + (TGG)n Simple_repeat Simple_repeat 1 27 0 682 294 132 0 chr9 29847811 29848039 -88014588 - MIR SINE MIR -4 258 1 186 406 24 32 chr9 29848161 29848284 -88014343 + L2 LINE L2 3149 3270 -2 574 336 69 42 chr9 29848725 29849205 -88013422 + L2 LINE L2 2537 3051 -221 707 305 47 8 chr9 29849270 29849506 -88013121 + MIR SINE MIR 6 250 -12 189 357 25 57 chr9 29849532 29849689 -88012938 + L2 LINE L2 3158 3309 -4 27 0 0 0 chr9 29849724 29849751 -88012876 + AT_rich Low_complexity Low_complexity 1 27 0 469 213 0 19 chr9 29850317 29850425 -88012202 - L1MA10 LINE L1 -7 6327 6222 29 0 0 0 chr9 29850457 29850486 -88012141 + AT_rich Low_complexity Low_complexity 1 29 0 4833 174 36 40 chr9 29850607 29851951 -88010676 - L1MA8 LINE L1 -6 6285 4937 223 295 162 48 chr9 29852748 29852853 -88009774 - MIR SINE MIR -71 137 21 228 147 0 0 chr9 29854625 29854659 -88007968 + L2 LINE L2 3264 3297 -16 2557 48 0 6 chr9 29854971 29855284 -88007343 - AluY SINE Alu 0 311 1 1705 125 9 92 chr9 29855284 29855612 -88007015 - AluSx SINE Alu -9 303 3 2940 126 7 2 chr9 29855616 29856070 -88006557 - L1PA15 LINE L1 0 6165 5710 270 0 0 0 chr9 29856773 29856803 -88005824 + (TG)n Simple_repeat Simple_repeat 1 30 0 794 261 51 114 chr9 29859732 29860161 -88002466 + MLT1E1 LTR MaLR 20 421 -172 6237 86 5 20 chr9 29860161 29861049 -88001578 + L1PA11 LINE L1 5301 6174 0 845 213 6 6 chr9 29861073 29861237 -88001390 + MLT1E1 LTR MaLR 491 654 0 22 0 0 0 chr9 29862500 29862522 -88000105 + AT_rich Low_complexity Low_complexity 1 22 0 214 353 98 21 chr9 29862597 29862832 -87999795 - MIR SINE MIR 0 262 10 2088 136 3 0 chr9 29862988 29863298 -87999329 + AluSq SINE Alu 1 311 -2 25 65 0 0 chr9 29863741 29863787 -87998840 + AT_rich Low_complexity Low_complexity 1 46 0 21 89 0 0 chr9 29865023 29865079 -87997548 + AT_rich Low_complexity Low_complexity 1 56 0 833 234 10 30 chr9 29865341 29865538 -87997089 - MIR SINE MIR -55 207 15 258 32 0 0 chr9 29865844 29865875 -87996752 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 484 274 62 111 chr9 29866110 29866479 -87996148 + L1ME LINE L1 5460 5671 -450 1355 169 20 102 chr9 29869420 29869567 -87993060 - L1MC1 LINE L1 0 6613 6456 1499 214 0 0 chr9 29869567 29869870 -87992757 + AluJo SINE Alu 13 315 0 1355 169 20 102 chr9 29869870 29870075 -87992552 - L1MC1 LINE L1 -157 6456 6289 4276 71 34 8 chr9 29870075 29871076 -87991551 + MER11A LTR ERVK 1 1266 0 8294 213 63 23 chr9 29871076 29875763 -87986864 - L1MC1 LINE L1 -320 6293 812 1402 177 8 8 chr9 29875765 29876013 -87986614 - AluJb SINE Alu -64 248 1 3923 192 30 26 chr9 29876014 29876811 -87985816 - L1MC1 LINE L1 -5599 827 28 197 295 77 0 chr9 29877914 29877992 -87984635 + L2 LINE L2 3229 3312 -1 445 49 62 0 chr9 29879558 29879639 -87982988 + (TCTA)n Simple_repeat Simple_repeat 1 86 0 27 49 0 0 chr9 29880519 29880560 -87982067 + AT_rich Low_complexity Low_complexity 1 41 0 1884 211 11 0 chr9 29880839 29881200 -87981427 + MLT1A1 LTR MaLR 1 365 0 218 350 17 43 chr9 29881409 29881526 -87981101 + L2 LINE L2 2956 3069 -244 424 332 79 5 chr9 29882049 29882251 -87980376 + MIR SINE MIR 30 246 -16 277 342 97 0 chr9 29882482 29882637 -87979990 + MIR SINE MIR 74 243 -19 642 305 70 9 chr9 29883253 29883466 -87979161 + MIR SINE MIR 10 235 -27 2088 115 10 0 chr9 29883672 29883960 -87978667 - AluSg SINE Alu -19 291 1 621 271 42 10 chr9 29884140 29884332 -87978295 + MLT1J1 LTR MaLR 1 198 -248 2020 118 0 3 chr9 29884672 29884959 -87977668 + AluSq SINE Alu 1 286 -27 321 232 0 0 chr9 29884965 29885034 -87977593 - L1MC4 LINE L1 -1339 6703 6635 514 246 57 23 chr9 29885305 29885480 -87977147 + MLT1J1 LTR MaLR 255 435 -11 290 340 207 24 chr9 29889724 29890784 -87971843 + L2 LINE L2 1285 2538 -776 6196 66 19 1 chr9 29891806 29892628 -87969999 + L1PA8 LINE L1 5335 6171 -1 371 299 121 0 chr9 29893740 29893897 -87968730 + MER5B DNA MER1_type 3 178 0 486 281 166 0 chr9 29893911 29894050 -87968577 - MER5A DNA MER1_type 0 189 28 279 204 20 0 chr9 29894934 29894983 -87967644 + MIR3 SINE MIR 114 163 -45 * 284 292 77 42 chr9 29894980 29895148 -87967479 - MIR SINE MIR 0 262 89 27 62 0 0 chr9 29896089 29896137 -87966490 + AT_rich Low_complexity Low_complexity 1 48 0 494 282 60 44 chr9 29896842 29897090 -87965537 + Tigger8 DNA MER2_type 60 311 -355 355 329 7 0 chr9 29897214 29897351 -87965276 + Tigger8 DNA MER2_type 390 527 -139 2268 93 0 10 chr9 29898081 29898382 -87964245 - AluY SINE Alu -13 298 1 1587 278 151 44 chr9 29899798 29901095 -87961532 + HAL1 LINE L1 446 1881 -626 3306 186 105 102 chr9 29901161 29901789 -87960838 + L1MD2 LINE L1 5074 5699 -660 2230 102 7 0 chr9 29901789 29902083 -87960544 - AluSp SINE Alu -17 296 1 3306 186 105 102 chr9 29902083 29902703 -87959924 + L1MD2 LINE L1 5699 6330 -29 280 354 38 19 chr9 29902849 29903058 -87959569 + L1MEd LINE L1 335 547 -5572 588 282 5 61 chr9 29904656 29904763 -87957864 - MIR SINE MIR -9 253 162 2209 179 94 39 chr9 29904763 29905283 -87957344 - MER44D DNA MER2_type -1 604 1 588 282 5 61 chr9 29905283 29905388 -87957239 - MIR SINE MIR -100 162 53 870 263 88 21 chr9 29905438 29905852 -87956775 - L1ME2 LINE L1 -10 6154 5714 23 0 0 0 chr9 29906101 29906124 -87956503 + AT_rich Low_complexity Low_complexity 1 23 0 204 341 174 12 chr9 29907131 29907298 -87955329 + MIR SINE MIR 8 201 -61 2142 95 7 3 chr9 29907303 29907588 -87955039 + AluSq SINE Alu 1 286 -27 336 64 0 0 chr9 29907588 29907635 -87954992 + (CATA)n Simple_repeat Simple_repeat 2 48 0 401 299 62 94 chr9 29907802 29908240 -87954387 + MLT1H LTR MaLR 104 527 -22 504 252 43 29 chr9 29908281 29908420 -87954207 - MIR SINE MIR -110 152 12 180 125 0 0 chr9 29908613 29908645 -87953982 + (CA)n Simple_repeat Simple_repeat 2 33 0 205 195 24 0 chr9 29909073 29909114 -87953513 + CT-rich Low_complexity Low_complexity 1 42 0 439 286 51 67 chr9 29909381 29909755 -87952872 + L1M4 LINE L1 3673 4040 -2106 576 258 72 10 chr9 29910463 29910657 -87951970 - L1M4 LINE L1 -1263 5843 5638 261 119 0 0 chr9 29910707 29910749 -87951878 + (TA)n Simple_repeat Simple_repeat 2 43 0 1080 251 42 40 chr9 29910790 29911240 -87951387 - L1MEc LINE L1 -3245 3861 3411 264 235 8 34 chr9 29911294 29911413 -87951214 - L1MEc LINE L1 -4129 3158 3043 884 188 108 0 chr9 29911483 29911706 -87950921 - L1MA8 LINE L1 -22 6269 6023 * 3302 253 116 58 chr9 29911705 29913228 -87949399 - L1M4 LINE L1 -5418 1612 2 330 326 109 29 chr9 29913243 29913519 -87949108 - L1MEc LINE L1 -4304 2983 2686 1820 263 30 87 chr9 29913626 29913988 -87948639 - L1M4c LINE L1 -4438 2849 2468 2725 52 9 0 chr9 29913988 29914331 -87948296 - L1PA7 LINE L1 -5 6149 5804 1820 263 30 87 chr9 29914331 29915395 -87947232 - L1M4c LINE L1 -4819 2468 1339 243 0 0 0 chr9 29915407 29915434 -87947193 + (TG)n Simple_repeat Simple_repeat 2 28 0 2119 114 0 3 chr9 29915435 29915725 -87946902 - AluSc SINE Alu -14 295 7 531 246 64 37 chr9 29916194 29916381 -87946246 - L1M4c LINE L1 -6613 395 204 407 333 41 7 chr9 29916488 29916635 -87945992 - MIR SINE MIR -106 156 5 22 0 0 0 chr9 29916960 29916982 -87945645 + AT_rich Low_complexity Low_complexity 1 22 0 414 321 10 72 chr9 29917345 29917538 -87945089 + MIR SINE MIR 57 237 -25 577 332 30 30 chr9 29917578 29917759 -87944868 + MIR SINE MIR 28 211 -51 3975 153 94 12 chr9 29917759 29918522 -87944105 + LTR1B LTR ERV1 1 826 0 577 332 30 30 chr9 29918522 29918575 -87944052 + MIR SINE MIR 210 262 0 25 75 0 0 chr9 29920394 29920447 -87942180 + AT_rich Low_complexity Low_complexity 1 53 0 213 308 46 0 chr9 29920846 29920911 -87941716 - MIR3 SINE MIR -22 186 119 405 261 76 57 chr9 29921453 29921610 -87941017 + MIR SINE MIR 73 232 -30 284 337 0 0 chr9 29921615 29921698 -87940929 + LTR40c LTR ERVL 4 86 -379 1619 162 6 79 chr9 29921784 29922112 -87940515 + AluJo SINE Alu 1 304 -8 427 230 29 88 chr9 29922213 29922452 -87940175 - L1M4 LINE L1 -1550 4596 4372 203 276 0 0 chr9 29922474 29922532 -87940095 + (TTTA)n Simple_repeat Simple_repeat 3 60 0 507 274 26 34 chr9 29922554 29922806 -87939821 + LTR40b LTR ERVL 187 451 -14 301 342 9 0 chr9 29923617 29923731 -87938896 + MIR SINE MIR 40 154 -108 300 261 183 59 chr9 29924545 29924698 -87937929 + MIR SINE MIR 79 250 -12 25 0 0 0 chr9 29924777 29924802 -87937825 + AT_rich Low_complexity Low_complexity 1 25 0 444 19 0 0 chr9 29924808 29924861 -87937766 + (CA)n Simple_repeat Simple_repeat 2 54 0 281 332 70 56 chr9 29924963 29925177 -87937450 - MIR SINE MIR -26 236 20 209 248 121 78 chr9 29925212 29925353 -87937274 - MER5A DNA MER1_type 0 189 43 * 230 323 85 62 chr9 29925256 29925386 -87937241 + MER5A DNA MER1_type 54 186 -3 2171 115 0 3 chr9 29925446 29925741 -87936886 - AluY SINE Alu -17 294 1 22 35 0 0 chr9 29925808 29925837 -87936790 + AT_rich Low_complexity Low_complexity 1 29 0 463 260 61 18 chr9 29926093 29926258 -87936369 + MIR SINE MIR 16 191 -64 2467 140 10 22 chr9 29926952 29927359 -87935268 + THE1C-int LTR MaLR 1179 1580 0 1593 168 26 60 chr9 29927359 29927711 -87934916 + THE1C LTR MaLR 1 340 -35 201 268 134 31 chr9 29928238 29928335 -87934292 + MIR SINE MIR 36 142 -120 2453 78 0 0 chr9 29930213 29930521 -87932106 + AluY SINE Alu 1 308 -3 23 0 0 0 chr9 29930860 29930883 -87931744 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr9 29931013 29931043 -87931584 + AT_rich Low_complexity Low_complexity 1 30 0 2213 138 8 8 chr9 29931320 29931689 -87930938 - L1PB1 LINE L1 -1 6150 5782 294 206 0 0 chr9 29931689 29931752 -87930875 + (TATATG)n Simple_repeat Simple_repeat 2 64 0 291 105 0 0 chr9 29931752 29931790 -87930837 + (CA)n Simple_repeat Simple_repeat 2 39 0 26 30 0 0 chr9 29931829 29931862 -87930765 + GC_rich Low_complexity Low_complexity 1 33 0 1052 88 0 11 chr9 29931904 29932085 -87930542 + (C)n Simple_repeat Simple_repeat 1 179 0 206 216 14 0 chr9 29932223 29932297 -87930330 + C-rich Low_complexity Low_complexity 2 76 0 186 43 0 0 chr9 29932333 29932356 -87930271 + (CA)n Simple_repeat Simple_repeat 1 23 0 1209 81 0 0 chr9 29932365 29932526 -87930101 - L1PB1 LINE L1 -370 5781 5621 222 37 0 0 chr9 29932867 29932894 -87929733 + (CA)n Simple_repeat Simple_repeat 1 27 0 1951 125 15 15 chr9 29933141 29933470 -87929157 + MER67C LTR ERV1 382 710 0 245 180 0 33 chr9 29933697 29933720 -87928907 + GA-rich Low_complexity Low_complexity 3 25 -36 2067 253 28 8 chr9 29933720 29934250 -87928377 + MER87 LTR ERV1 1 541 0 245 180 0 33 chr9 29934250 29934287 -87928340 + GA-rich Low_complexity Low_complexity 25 61 0 9934 220 44 11 chr9 29934537 29936764 -87925863 + L1MA9 LINE L1 2587 4740 -1572 2115 171 47 33 chr9 29936764 29937215 -87925412 + MSTB2 LTR MaLR 1 457 0 9934 220 44 11 chr9 29937215 29937281 -87925346 + L1MA9 LINE L1 4740 4802 -1510 180 0 0 0 chr9 29937281 29937301 -87925326 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 9934 220 44 11 chr9 29937301 29938143 -87924484 + L1MA9 LINE L1 4802 5831 -481 615 117 0 0 chr9 29938148 29938242 -87924385 + (GA)n Simple_repeat Simple_repeat 1 94 0 1696 192 32 49 chr9 29938242 29938748 -87923879 + L1MA9 LINE L1 5814 6275 -37 2562 53 0 3 chr9 29938888 29939192 -87923435 + AluY SINE Alu 1 303 -8 1618 241 29 77 chr9 29939196 29939997 -87922630 - L1MC5 LINE L1 -435 7526 6628 369 0 0 0 chr9 29939998 29940039 -87922588 + (CA)n Simple_repeat Simple_repeat 2 42 0 513 0 0 0 chr9 29940847 29940904 -87921723 + (TA)n Simple_repeat Simple_repeat 1 57 0 354 291 101 39 chr9 29940920 29941178 -87921449 - HAL1b LINE L1 -966 382 109 495 0 0 0 chr9 29942837 29942892 -87919735 + (TG)n Simple_repeat Simple_repeat 1 55 0 445 355 52 3 chr9 29942900 29943147 -87919480 + MIR SINE MIR 6 260 -2 362 297 43 58 chr9 29943321 29943459 -87919168 + L2 LINE L2 3137 3272 0 2408 81 0 0 chr9 29944468 29944766 -87917861 + AluY SINE Alu 1 298 -13 195 42 0 0 chr9 29944861 29944885 -87917742 + (ATG)n Simple_repeat Simple_repeat 2 25 0 378 0 0 0 chr9 29945426 29945468 -87917159 + (CA)n Simple_repeat Simple_repeat 2 43 0 220 246 0 18 chr9 29945829 29945886 -87916741 + (CATATA)n Simple_repeat Simple_repeat 2 57 0 340 358 18 0 chr9 29947997 29948106 -87914521 - L2 LINE L2 -8 3264 3154 1609 150 194 6 chr9 29948257 29948617 -87914010 + MSTA LTR MaLR 1 428 0 182 345 58 46 chr9 29951587 29951674 -87910953 + L3 LINE CR1 1016 1103 -474 387 0 0 0 chr9 29952215 29952258 -87910369 + (TG)n Simple_repeat Simple_repeat 2 44 0 420 307 22 39 chr9 29952419 29952598 -87910029 - MIR3 SINE MIR -5 203 28 205 327 50 50 chr9 29952598 29952757 -87909870 + L3 LINE CR1 1411 1569 -8 21 0 0 0 chr9 29953490 29953511 -87909116 + AT_rich Low_complexity Low_complexity 1 21 0 330 266 0 13 chr9 29953736 29953815 -87908812 - L2 LINE L2 -1 3271 3194 1665 166 43 15 chr9 29954164 29954490 -87908137 - MER7A DNA MER2_type 0 346 14 984 246 87 16 chr9 29954588 29954909 -87907718 + MER2 DNA MER2_type 1 344 0 287 376 8 8 chr9 29954993 29955118 -87907509 - L2 LINE L2 -213 3059 2935 1510 217 33 28 chr9 29955123 29955483 -87907144 - MLT1A1 LTR MaLR 0 365 4 21 36 0 0 chr9 29955491 29955519 -87907108 + AT_rich Low_complexity Low_complexity 1 28 0 476 327 44 24 chr9 29955735 29955986 -87906641 + MIR SINE MIR 7 262 0 2317 78 14 0 chr9 29956056 29956349 -87906278 + AluSc SINE Alu 1 297 -12 473 290 181 19 chr9 29956739 29956998 -87905629 + L2 LINE L2 2988 3288 -25 345 82 0 0 chr9 29957053 29957102 -87905525 + (CA)n Simple_repeat Simple_repeat 1 49 0 188 313 43 96 chr9 29957736 29957851 -87904776 + L2 LINE L2 3148 3256 -16 2198 130 8 31 chr9 29959892 29960276 -87902351 - THE1C LTR MaLR 0 375 1 21 0 0 0 chr9 29960407 29960428 -87902199 + AT_rich Low_complexity Low_complexity 1 21 0 2974 169 138 36 chr9 29961358 29961701 -87900926 + MER44D DNA MER2_type 1 308 -2279 2464 60 0 19 chr9 29961701 29962018 -87900609 - AluY SINE Alu 0 311 1 2974 169 138 36 chr9 29962018 29962312 -87900315 + MER44D DNA MER2_type 308 703 -2 27 0 0 0 chr9 29962469 29962496 -87900131 + AT_rich Low_complexity Low_complexity 1 27 0 230 161 0 18 chr9 29963412 29963468 -87899159 + (TA)n Simple_repeat Simple_repeat 1 55 0 428 278 192 0 chr9 29965120 29965271 -87897356 + MER5A DNA MER1_type 10 189 0 2218 58 0 4 chr9 29965410 29965715 -87896912 + AluSc SINE Alu 3 306 0 1967 127 0 13 chr9 29966202 29966518 -87896109 - AluSx SINE Alu 0 312 1 286 250 135 19 chr9 29966553 29966657 -87895970 + L2 LINE L2 3183 3298 -15 285 185 25 12 chr9 29966927 29967008 -87895619 + (TA)n Simple_repeat Simple_repeat 1 82 0 315 0 0 0 chr9 29967368 29967403 -87895224 + (CA)n Simple_repeat Simple_repeat 2 36 0 180 152 0 0 chr9 29968314 29968347 -87894280 + (TG)n Simple_repeat Simple_repeat 2 34 0 218 352 105 0 chr9 29968553 29968658 -87893969 - L2 LINE L2 -2 3311 3196 388 129 0 24 chr9 29968659 29968744 -87893883 + (TA)n Simple_repeat Simple_repeat 2 84 0 339 25 0 0 chr9 29968744 29968784 -87893843 + (GA)n Simple_repeat Simple_repeat 2 41 0 5329 308 110 12 chr9 29968909 29971049 -87891578 - L2 LINE L2 -834 2480 131 278 333 78 16 chr9 29971055 29971184 -87891443 + MIR SINE MIR 125 261 -1 24 67 0 0 chr9 29973250 29973295 -87889332 + AT_rich Low_complexity Low_complexity 1 45 0 22 80 0 0 chr9 29973434 29973484 -87889143 + AT_rich Low_complexity Low_complexity 1 50 0 227 394 96 0 chr9 29973529 29973623 -87889004 + L2 LINE L2 3191 3293 -20 330 258 156 27 chr9 29974587 29974687 -87887940 - MER112 DNA MER1_type -50 210 124 240 59 0 0 chr9 29974687 29974721 -87887906 + (TG)n Simple_repeat Simple_repeat 2 35 0 330 258 156 27 chr9 29974721 29974806 -87887821 - MER112 DNA MER1_type -136 124 1 37 23 0 0 chr9 29974865 29974909 -87887718 + AT_rich Low_complexity Low_complexity 1 44 0 347 0 23 0 chr9 29975918 29975961 -87886666 + (CAAAAA)n Simple_repeat Simple_repeat 1 44 0 180 308 44 11 chr9 29976694 29976785 -87885842 + MIR SINE MIR 44 137 -71 2177 85 3 3 chr9 29978380 29978708 -87883919 - AluY SINE Alu 0 328 1 212 392 200 0 chr9 29979174 29979304 -87883323 + L2 LINE L2 3116 3271 -1 24 67 0 0 chr9 29980148 29980193 -87882434 + AT_rich Low_complexity Low_complexity 1 45 0 268 304 70 17 chr9 29980724 29980839 -87881788 + L2 LINE L2 2585 2705 -609 2325 83 0 7 chr9 29980848 29981149 -87881478 + AluSg SINE Alu 1 299 -11 219 389 38 8 chr9 29981211 29981342 -87881285 + L2 LINE L2 2851 2985 -287 313 296 75 31 chr9 29981825 29981984 -87880643 + MER117 DNA MER1_type 1 166 -31 1286 325 141 40 chr9 29982123 29983359 -87879268 + L2 LINE L2 1947 3312 -1 28 0 0 0 chr9 29983595 29983623 -87879004 + AT_rich Low_complexity Low_complexity 1 28 0 31 68 0 0 chr9 29983715 29983774 -87878853 + AT_rich Low_complexity Low_complexity 1 59 0 1533 160 90 16 chr9 29984589 29984901 -87877726 - MER44D DNA MER2_type -4 605 1 499 319 160 31 chr9 29984929 29985374 -87877253 - L2 LINE L2 -1 3312 2811 2130 120 0 0 chr9 29985541 29985840 -87876787 + AluSc SINE Alu 1 299 -10 275 329 66 15 chr9 29985844 29985981 -87876646 + L2 LINE L2 2562 2705 -609 1391 69 0 11 chr9 29985990 29986165 -87876462 + AluSg SINE Alu 1 173 -137 225 333 40 33 chr9 29986688 29986838 -87875789 - L2 LINE L2 -1640 1674 1524 1834 189 43 36 chr9 29987262 29987653 -87874974 - MSTD LTR MaLR 0 396 3 537 288 52 86 chr9 29988656 29989076 -87873551 - MLT1K LTR MaLR 0 588 183 2098 137 0 3 chr9 29989764 29990070 -87872557 - AluSq SINE Alu -8 305 1 3245 94 0 5 chr9 29993788 29994234 -87868393 + MLT2A1 LTR ERVL 1 444 0 365 304 151 13 chr9 29994371 29994554 -87868073 - MIR SINE MIR -49 213 7 1097 251 118 22 chr9 29994775 29995130 -87867497 + MLT1G1 LTR MaLR 15 403 -192 246 403 0 7 chr9 29995397 29995536 -87867091 + MLT1G1 LTR MaLR 451 588 -7 451 308 77 11 chr9 29995906 29996088 -87866539 + MER117 DNA MER1_type 4 197 0 205 316 127 13 chr9 29996201 29996359 -87866268 + MIR SINE MIR 17 192 -70 274 271 369 9 chr9 29998553 29998767 -87863860 - L3 LINE CR1 -8 1569 1279 681 240 28 69 chr9 29998770 29998987 -87863640 + MIR SINE MIR 49 256 -6 348 301 89 60 chr9 29999002 29999284 -87863343 + L3 LINE CR1 691 980 -597 23 33 0 0 chr9 29999481 29999511 -87863116 + AT_rich Low_complexity Low_complexity 1 30 0 462 171 191 7 chr9 29999610 29999762 -87862865 - Charlie4 DNA MER1_type -7 1954 1775 * 661 201 93 26 chr9 29999761 29999955 -87862672 - Charlie4 DNA MER1_type -1669 292 86 1956 213 82 49 chr9 30000270 30000904 -87861723 + LTR1B LTR ERV1 1 655 -171 2089 123 3 7 chr9 30000990 30001292 -87861335 + AluSq SINE Alu 1 301 -12 281 378 30 20 chr9 30001776 30001977 -87860650 - L2 LINE L2 -513 2801 2599 189 195 0 0 chr9 30002142 30002183 -87860444 + (CA)n Simple_repeat Simple_repeat 2 42 0 221 341 24 0 chr9 30002183 30002268 -87860359 + (CATG)n Simple_repeat Simple_repeat 4 90 0 228 122 0 0 chr9 30002269 30002310 -87860317 + (CA)n Simple_repeat Simple_repeat 1 41 0 21 0 0 0 chr9 30003273 30003294 -87859333 + AT_rich Low_complexity Low_complexity 1 21 0 345 308 29 19 chr9 30006270 30006374 -87856253 + L2 LINE L2 3168 3272 0 2204 101 0 3 chr9 30007713 30008000 -87854627 - AluSp SINE Alu -27 286 1 38 51 0 0 chr9 30008005 30008064 -87854563 + AT_rich Low_complexity Low_complexity 1 59 0 2219 92 0 3 chr9 30008748 30009031 -87853596 + AluSp SINE Alu 1 282 -31 267 31 0 0 chr9 30009034 30009066 -87853561 + (TA)n Simple_repeat Simple_repeat 2 33 0 1597 210 78 24 chr9 30009455 30009917 -87852710 + Charlie1b DNA MER1_type 37 523 0 359 231 10 39 chr9 30009922 30010026 -87852601 + L2 LINE L2 2390 2490 -824 7387 184 98 59 chr9 30010059 30011747 -87850880 - MER52A LTR ERV1 -2 1753 1 204 388 50 0 chr9 30011761 30011921 -87850706 + L2 LINE L2 2507 2674 -640 361 332 74 21 chr9 30012215 30012414 -87850213 + L2 LINE L2 2809 3014 -299 201 231 0 19 chr9 30012749 30012801 -87849826 + MIR SINE MIR 110 160 -102 747 283 33 50 chr9 30012812 30013112 -87849515 - L2 LINE L2 0 3313 3019 443 174 23 0 chr9 30013638 30013724 -87848903 - MIR SINE MIR -73 189 102 343 171 40 0 chr9 30014598 30014674 -87847953 + MER116 DNA Mariner 2 80 0 209 318 209 18 chr9 30015240 30015350 -87847277 + MIR SINE MIR 34 164 -98 2175 127 0 16 chr9 30015465 30015781 -87846846 + AluSx SINE Alu 2 312 0 213 94 0 0 chr9 30017390 30017422 -87845205 + (CA)n Simple_repeat Simple_repeat 2 33 0 602 314 52 44 chr9 30018154 30018498 -87844129 - MLT1I LTR MaLR 0 409 63 21 0 0 0 chr9 30018997 30019018 -87843609 + AT_rich Low_complexity Low_complexity 1 21 0 313 271 47 0 chr9 30019133 30019218 -87843409 + L1MC4 LINE L1 6614 6702 -1340 378 131 0 36 chr9 30019219 30019303 -87843324 + (TA)n Simple_repeat Simple_repeat 2 82 0 271 239 0 22 chr9 30019309 30019401 -87843226 + L1MC4 LINE L1 6614 6703 -1339 657 117 4 59 chr9 30019421 30019703 -87842924 + (TA)n Simple_repeat Simple_repeat 1 266 0 312 283 0 22 chr9 30019707 30019799 -87842828 + L1MC4 LINE L1 6614 6703 -1339 459 173 0 64 chr9 30020232 30020342 -87842285 + MLT1A1 LTR MaLR 3 105 -260 284 342 61 61 chr9 30021120 30021415 -87841212 + L2 LINE L2 2977 3271 -1 272 342 25 66 chr9 30021875 30022118 -87840509 + MLT1I LTR MaLR 101 333 -76 1554 216 107 50 chr9 30022509 30022986 -87839641 - MLT1D LTR MaLR 0 505 2 21 36 0 0 chr9 30023061 30023089 -87839538 + AT_rich Low_complexity Low_complexity 1 28 0 193 222 56 56 chr9 30024569 30024641 -87837986 + L3 LINE CR1 1486 1557 -20 1893 159 37 11 chr9 30024913 30025265 -87837362 - THE1C LTR MaLR -1 374 14 242 319 11 11 chr9 30025295 30025389 -87837238 + MIR SINE MIR 113 206 -56 817 211 26 21 chr9 30025411 30025601 -87837026 + MER20 DNA MER1_type 29 219 0 219 69 0 0 chr9 30027035 30027064 -87835563 + (CA)n Simple_repeat Simple_repeat 2 30 0 528 356 170 34 chr9 30027654 30028676 -87833951 - L2 LINE L2 -16 3256 2107 607 312 78 9 chr9 30028713 30028931 -87833696 - MIR SINE MIR -18 244 12 916 180 44 81 chr9 30029021 30029293 -87833334 + MER33 DNA MER1_type 1 262 -62 213 294 200 0 chr9 30030393 30030478 -87832149 + MIR SINE MIR 115 216 -46 26 30 0 0 chr9 30031121 30031154 -87831473 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr9 30031287 30031308 -87831319 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr9 30031437 30031471 -87831156 + AT_rich Low_complexity Low_complexity 1 34 0 1511 234 19 22 chr9 30031580 30031947 -87830680 + MLT2D LTR ERVL 1 366 -48 293 47 23 0 chr9 30031949 30031992 -87830635 + (TAGA)n Simple_repeat Simple_repeat 4 47 0 210 169 13 26 chr9 30032008 30032085 -87830542 + (TA)n Simple_repeat Simple_repeat 1 76 0 370 99 87 5 chr9 30032329 30032754 -87829873 + (TA)n Simple_repeat Simple_repeat 1 459 0 321 26 0 0 chr9 30032962 30033000 -87829627 + (TAAAA)n Simple_repeat Simple_repeat 2 39 0 759 176 8 0 chr9 30033000 30033131 -87829496 + FRAM SINE Alu 1 129 -47 21 0 0 0 chr9 30034604 30034625 -87828002 + AT_rich Low_complexity Low_complexity 1 21 0 425 116 0 0 chr9 30035563 30035632 -87826995 + L1PA13 LINE L1 6088 6156 -7 30 0 0 0 chr9 30036150 30036180 -87826447 + AT_rich Low_complexity Low_complexity 1 30 0 349 341 103 66 chr9 30036203 30036523 -87826104 - L2 LINE L2 -12 3260 2929 2126 115 0 6 chr9 30036885 30037198 -87825429 + AluY SINE Alu 1 311 0 227 305 102 53 chr9 30039013 30039168 -87823459 - MIR SINE MIR -57 151 45 229 259 0 0 chr9 30039773 30039831 -87822796 + (TG)n Simple_repeat Simple_repeat 2 59 0 269 336 65 100 chr9 30040518 30040967 -87821660 - L2 LINE L2 -2 3270 2838 237 349 34 81 chr9 30041761 30041996 -87820631 + L2 LINE L2 2963 3186 -86 524 343 116 15 chr9 30042106 30042587 -87820040 + L1MC4a LINE L1 5296 5825 -1983 31 26 0 0 chr9 30042593 30042631 -87819996 + AT_rich Low_complexity Low_complexity 1 38 0 26 82 0 0 chr9 30042905 30042966 -87819661 + AT_rich Low_complexity Low_complexity 1 61 0 242 298 158 0 chr9 30043104 30043241 -87819386 + MIR SINE MIR 15 173 -89 1960 120 22 35 chr9 30044478 30044794 -87817833 + AluSx SINE Alu 1 312 0 25 0 0 0 chr9 30045255 30045280 -87817347 + AT_rich Low_complexity Low_complexity 1 25 0 413 278 26 147 chr9 30045784 30046057 -87816570 - MIR SINE MIR -3 259 20 309 272 64 32 chr9 30046544 30046669 -87815958 - L1MC4 LINE L1 0 8042 7914 918 215 129 68 chr9 30046722 30047163 -87815464 - L1MC4 LINE L1 -132 7910 7443 209 57 29 0 chr9 30047617 30047652 -87814975 + (TTA)n Simple_repeat Simple_repeat 3 38 0 8370 31 0 0 chr9 30047652 30049406 -87813221 - L1PA3 LINE L1 -18 6137 4384 9922 38 2 0 chr9 30049406 30050630 -87811997 + L1PA3 LINE L1 3172 4397 -1749 332 331 73 22 chr9 30051249 30051427 -87811200 + MIR3 SINE MIR 17 203 -5 2136 106 0 20 chr9 30051492 30051589 -87811038 - AluSx SINE Alu -11 301 204 3398 197 23 63 chr9 30051589 30052599 -87810028 + LTR5 LTR ERVK 1 969 0 2136 106 0 20 chr9 30052599 30052803 -87809824 - AluSx SINE Alu -108 204 6 1883 105 0 14 chr9 30053019 30053295 -87809332 - L1PA11 LINE L1 -4 6170 5899 306 266 0 38 chr9 30053694 30053773 -87808854 + MIR SINE MIR 5 80 -182 521 341 49 46 chr9 30054261 30054566 -87808061 + L2 LINE L2 2589 2894 -420 220 69 0 0 chr9 30054568 30054597 -87808030 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 702 120 0 0 chr9 30054597 30054697 -87807930 - AluSg/x SINE Alu -30 282 183 263 328 52 95 chr9 30054763 30054989 -87807638 + L2 LINE L2 2926 3160 -153 407 92 15 0 chr9 30054989 30055054 -87807573 + (TA)n Simple_repeat Simple_repeat 2 67 0 2267 112 0 0 chr9 30055058 30055362 -87807265 - AluSx SINE Alu -8 304 1 263 328 52 95 chr9 30055362 30055530 -87807097 + L2 LINE L2 3163 3308 -5 361 188 15 23 chr9 30056052 30056185 -87806442 + (TA)n Simple_repeat Simple_repeat 2 133 0 306 221 11 42 chr9 30056223 30056318 -87806309 - L1MC4 LINE L1 -1339 6703 6612 417 11 100 0 chr9 30056318 30056408 -87806219 + (TA)n Simple_repeat Simple_repeat 1 99 0 309 281 0 35 chr9 30056761 30056906 -87805721 + L1MC4 LINE L1 6614 6703 -1339 230 313 50 12 chr9 30060506 30060586 -87802041 - L2 LINE L2 0 3313 3231 30 0 0 0 chr9 30060822 30060852 -87801775 + AT_rich Low_complexity Low_complexity 1 30 0 306 0 0 0 chr9 30061580 30061614 -87801013 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 370 194 14 0 chr9 30062657 30062729 -87799898 + MIR SINE MIR 101 173 -89 300 262 104 53 chr9 30064874 30065128 -87797499 - L1ME LINE L1 -542 5579 5312 4335 39 0 0 chr9 30065135 30065654 -87796973 - L1PA3 LINE L1 0 6155 5637 22 0 0 0 chr9 30066043 30066065 -87796562 + AT_rich Low_complexity Low_complexity 1 22 0 1351 141 48 0 chr9 30066105 30066375 -87796252 - L1MA8 LINE L1 -1 6290 6008 416 370 110 28 chr9 30066521 30066626 -87796001 - L2 LINE L2 -678 2636 2541 2110 176 13 33 chr9 30066626 30067080 -87795547 + MER65A LTR ERV1 1 445 0 416 370 110 28 chr9 30067080 30067576 -87795051 - L2 LINE L2 -773 2541 1986 652 277 114 0 chr9 30068950 30069170 -87793457 + MIR SINE MIR 15 259 -3 307 350 84 31 chr9 30069249 30069475 -87793152 + L3 LINE CR1 1329 1566 -11 1177 153 18 9 chr9 30070103 30070325 -87792302 + L1PA13 LINE L1 5939 6162 -1 5997 239 102 32 chr9 30070367 30073291 -87789336 + L1MA8 LINE L1 1 3147 -3959 603 233 8 0 chr9 30073293 30073413 -87789214 + FLAM_C SINE Alu 1 121 -12 12058 200 41 23 chr9 30073433 30074827 -87787800 + L1MA8 LINE L1 3124 4492 -2759 347 60 20 0 chr9 30074827 30074877 -87787750 + (TTCA)n Simple_repeat Simple_repeat 4 54 0 1532 193 11 21 chr9 30074878 30075163 -87787464 - AluJo SINE Alu -30 282 1 12058 200 41 23 chr9 30075163 30077820 -87784807 + L1MA8 LINE L1 4491 7246 -5 291 54 0 0 chr9 30079525 30079562 -87783065 + (CA)n Simple_repeat Simple_repeat 2 38 0 25 0 0 0 chr9 30081458 30081483 -87781144 + AT_rich Low_complexity Low_complexity 1 25 0 1971 141 152 11 chr9 30081834 30082209 -87780418 + MSTA LTR MaLR 1 428 0 225 293 123 28 chr9 30084291 30084397 -87778230 + MLT1I LTR MaLR 126 241 -168 1144 219 8 21 chr9 30085916 30086158 -87776469 - MER8 DNA MER2_type 0 239 1 2394 81 0 3 chr9 30086236 30086545 -87776082 + AluSc SINE Alu 2 309 0 853 206 22 0 chr9 30086691 30086871 -87775756 - MER5A DNA MER1_type -4 185 2 249 376 120 0 chr9 30087095 30087212 -87775415 - L2 LINE L2 -5 3267 3137 4194 146 79 34 chr9 30087336 30088202 -87774425 + MER4D LTR ERV1 1 664 0 21 82 0 0 chr9 30088582 30088631 -87773996 + AT_rich Low_complexity Low_complexity 1 49 0 1159 102 0 18 chr9 30088826 30088993 -87773634 - AluSq SINE Alu -5 308 145 425 292 88 21 chr9 30089125 30089317 -87773310 + L3 LINE CR1 657 861 -716 242 308 0 22 chr9 30089330 30089421 -87773206 + MLT1L LTR MaLR 1 89 -526 2146 112 29 11 chr9 30089450 30089799 -87772828 - THE1A LTR MaLR 0 355 1 272 311 37 22 chr9 30089865 30090000 -87772627 + MLT1J LTR MaLR 235 371 -140 238 240 0 40 chr9 30090167 30090267 -87772360 + A-rich Low_complexity Low_complexity 2 97 0 306 243 176 34 chr9 30091383 30091531 -87771096 - L1MC/D LINE L1 -2028 5780 5612 30 0 0 0 chr9 30091678 30091708 -87770919 + AT_rich Low_complexity Low_complexity 1 30 0 186 43 0 0 chr9 30092110 30092133 -87770494 + (CA)n Simple_repeat Simple_repeat 2 24 0 397 265 93 40 chr9 30092177 30092328 -87770299 + MIR SINE MIR 32 190 -72 870 311 65 29 chr9 30093087 30093576 -87769051 + LTR33 LTR ERVL 13 519 -2 180 111 0 0 chr9 30094007 30094034 -87768593 + (TGAA)n Simple_repeat Simple_repeat 2 28 0 1151 264 53 35 chr9 30094156 30094554 -87768073 + MLT1D LTR MaLR 1 405 -100 234 350 43 17 chr9 30095391 30095508 -87767119 + L2 LINE L2 2677 2796 -518 1831 165 7 7 chr9 30095602 30095905 -87766722 - AluSx SINE Alu -9 303 1 210 71 0 0 chr9 30095927 30095955 -87766672 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1130 166 18 5 chr9 30096164 30096381 -87766246 - L1 LINE L1 -3677 2469 2250 964 139 39 0 chr9 30096381 30096553 -87766074 + L1MA7 LINE L1 6105 6291 0 1820 253 55 33 chr9 30096577 30097126 -87765501 + MER77 LTR ERV1 41 601 -4 2286 110 0 3 chr9 30097417 30097726 -87764901 + AluSg SINE Alu 1 308 -2 356 278 66 69 chr9 30098236 30098553 -87764074 + L2 LINE L2 2964 3279 -34 333 329 73 0 chr9 30098918 30099055 -87763572 + MIR SINE MIR 110 256 -6 955 291 16 4 chr9 30099086 30099337 -87763290 - MIR SINE MIR 0 262 9 224 358 204 11 chr9 30099355 30099531 -87763096 - MIR SINE MIR 0 262 53 616 131 10 0 chr9 30099808 30099907 -87762720 + Tigger2 DNA MER2_type 2 101 -2617 217 236 55 0 chr9 30101751 30101806 -87760821 + L2 LINE L2 3256 3313 0 2031 109 4 0 chr9 30103212 30103487 -87759140 + AluSg SINE Alu 1 276 -34 399 41 0 0 chr9 30103492 30103541 -87759086 + (TAAAA)n Simple_repeat Simple_repeat 2 50 0 231 266 48 81 chr9 30103839 30103963 -87758664 - MIR SINE MIR -4 258 139 190 378 65 44 chr9 30104026 30104281 -87758346 + L2 LINE L2 2395 2663 -651 1908 153 0 0 chr9 30104281 30104591 -87758036 - AluSx SINE Alu 0 310 1 190 378 65 44 chr9 30104591 30104718 -87757909 + L2 LINE L2 2663 2786 -528 2120 158 101 5 chr9 30104975 30105381 -87757246 + MER65A LTR ERV1 1 445 0 248 271 34 68 chr9 30107817 30107935 -87754692 - MIR SINE MIR -65 197 84 219 336 62 31 chr9 30107989 30108117 -87754510 + MIR SINE MIR 105 236 -26 1455 232 55 8 chr9 30108165 30108531 -87754096 - MLT1B LTR MaLR 0 390 8 1717 247 36 38 chr9 30108532 30108982 -87753645 - MLT1B-int LTR MaLR -8 1727 1279 1653 136 29 0 chr9 30109174 30109447 -87753180 - L1PA13 LINE L1 -1 6162 5882 952 223 38 17 chr9 30109525 30109821 -87752806 - MLT1B-int LTR MaLR -487 884 491 1505 163 30 95 chr9 30109841 30110209 -87752418 + MER7A DNA MER2_type 2 343 -3 406 384 56 30 chr9 30110899 30111167 -87751460 + L2 LINE L2 2998 3272 0 24 0 0 0 chr9 30111400 30111424 -87751203 + AT_rich Low_complexity Low_complexity 1 24 0 686 286 84 47 chr9 30111533 30111960 -87750667 + MLT1J1 LTR MaLR 4 446 0 276 170 0 0 chr9 30112415 30112468 -87750159 + GA-rich Low_complexity Low_complexity 4 56 0 384 212 50 10 chr9 30113296 30113395 -87749232 - Charlie2b DNA MER1_type -2114 668 566 501 319 26 31 chr9 30113415 30113644 -87748983 - Charlie2b DNA MER1_type -2479 303 76 306 269 77 69 chr9 30113835 30113965 -87748662 + MIR3 SINE MIR 5 135 -73 211 363 118 15 chr9 30114136 30114271 -87748356 + L2 LINE L2 3122 3270 -2 544 330 53 23 chr9 30115384 30115726 -87746901 - MLT1J LTR MaLR -46 465 114 201 74 0 0 chr9 30115739 30115766 -87746861 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 2221 103 0 0 chr9 30115788 30116090 -87746537 - AluSq SINE Alu -11 302 1 223 369 70 19 chr9 30116509 30116666 -87745961 + MIR SINE MIR 44 208 -54 332 351 23 8 chr9 30117005 30117136 -87745491 + MER5A DNA MER1_type 57 189 0 214 258 83 61 chr9 30117470 30117602 -87745025 - MIR SINE MIR -36 226 92 282 196 0 0 chr9 30118485 30118582 -87744045 + (TA)n Simple_repeat Simple_repeat 1 97 0 401 323 133 5 chr9 30118704 30118899 -87743728 + MIR SINE MIR 2 221 -41 191 209 33 11 chr9 30119068 30119159 -87743468 + (TA)n Simple_repeat Simple_repeat 1 93 0 13359 88 4 64 chr9 30120486 30122661 -87739966 + L1P LINE L1 2983 5026 -1120 722 272 150 23 chr9 30122661 30123264 -87739363 + LTR50 LTR ERVL 33 759 -36 1130 71 19 0 chr9 30123264 30123418 -87739209 + L1PA8A LINE L1 5325 5481 -650 181 368 13 26 chr9 30123654 30123730 -87738897 + MIR SINE MIR 12 86 -176 1096 279 92 39 chr9 30123785 30124277 -87738350 + MLT1H LTR MaLR 19 536 -13 194 268 31 62 chr9 30124302 30124399 -87738228 + MIR SINE MIR 159 252 -10 4673 225 50 39 chr9 30124687 30126118 -87736509 - Charlie1a DNA MER1_type -3 1452 7 282 289 18 24 chr9 30126494 30126660 -87735967 + GA-rich Low_complexity Low_complexity 2 166 0 615 173 91 0 chr9 30127207 30127317 -87735310 - FLAM_C SINE Alu -23 120 1 758 221 4 4 chr9 30127941 30128189 -87734438 + CT-rich Low_complexity Low_complexity 1 248 0 531 320 73 14 chr9 30129241 30129460 -87733167 - MIR SINE MIR -13 249 18 262 206 27 0 chr9 30130079 30130152 -87732475 + GA-rich Low_complexity Low_complexity 2 76 0 213 39 0 0 chr9 30130972 30130998 -87731629 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 306 0 0 0 chr9 30130997 30131031 -87731596 + (CA)n Simple_repeat Simple_repeat 1 34 0 1244 237 3 14 chr9 30131620 30131907 -87730720 + AluJo SINE Alu 19 302 -10 195 162 0 0 chr9 30132231 30132268 -87730359 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 26 50 0 0 chr9 30132275 30132315 -87730312 + AT_rich Low_complexity Low_complexity 1 40 0 192 40 0 0 chr9 30133422 30133447 -87729180 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 639 294 0 33 chr9 30133567 30133747 -87728880 - MIR SINE MIR -21 241 68 275 187 147 13 chr9 30134638 30134713 -87727914 + MER3 DNA MER1_type 124 208 -1 3411 153 30 10 chr9 30134749 30134928 -87727699 + L1MA4A LINE L1 5611 5785 -518 315 0 0 0 chr9 30134928 30134963 -87727664 + (CA)n Simple_repeat Simple_repeat 2 36 0 3411 153 30 10 chr9 30134963 30135391 -87727236 + L1MA4A LINE L1 5785 6230 -73 273 196 0 0 chr9 30135470 30135526 -87727101 + (CATATA)n Simple_repeat Simple_repeat 4 59 0 192 274 34 164 chr9 30135652 30135798 -87726829 - L2 LINE L2 -188 3084 2958 393 327 142 9 chr9 30135883 30136109 -87726518 - L2 LINE L2 -498 2816 2561 30 89 0 0 chr9 30136355 30136434 -87726193 + AT_rich Low_complexity Low_complexity 1 79 0 279 315 48 55 chr9 30137888 30138034 -87724593 - MIR SINE MIR -60 202 58 256 308 0 26 chr9 30139928 30140006 -87722621 + L2 LINE L2 3234 3309 -4 1651 294 105 75 chr9 30140457 30141669 -87720958 - L2 LINE L2 -90 3223 1985 17503 164 50 21 chr9 30141707 30144005 -87718622 + L1M1 LINE L1 22 2252 -5313 2520 113 3 6 chr9 30144005 30144369 -87718258 - THE1B LTR MaLR -1 363 1 17503 164 50 21 chr9 30144369 30144757 -87717870 + L1M1 LINE L1 2252 2627 -4938 2226 122 37 8 chr9 30144757 30145111 -87717516 + THE1B LTR MaLR 1 364 0 17503 164 50 21 chr9 30145111 30145508 -87717119 + L1M1 LINE L1 2627 3011 -4554 2067 104 7 3 chr9 30145508 30145805 -87716822 + AluSg SINE Alu 1 298 -12 17503 164 50 21 chr9 30145805 30146011 -87716616 + L1M1 LINE L1 3011 3409 -4156 428 284 139 36 chr9 30146098 30146292 -87716335 - MIR SINE MIR 0 262 49 190 363 20 10 chr9 30146305 30146407 -87716220 + MIR SINE MIR 38 140 -68 28 29 0 0 chr9 30148853 30148888 -87713739 + AT_rich Low_complexity Low_complexity 1 35 0 339 360 94 24 chr9 30149303 30149600 -87713027 + L3b LINE CR1 1105 1422 -161 412 257 118 43 chr9 30149800 30149987 -87712640 + MIR SINE MIR 53 253 -9 186 71 0 0 chr9 30150887 30150915 -87711712 + (CA)n Simple_repeat Simple_repeat 2 29 0 1346 284 66 49 chr9 30151338 30152353 -87710274 + L2 LINE L2 2281 3308 -5 187 330 75 21 chr9 30153133 30153227 -87709400 - L2 LINE L2 -18 3295 3197 321 347 32 63 chr9 30153444 30153634 -87708993 + MER5A DNA MER1_type 3 186 -3 529 308 77 5 chr9 30154485 30154680 -87707947 + MER58C DNA MER1_type 4 212 -3 5385 178 17 20 chr9 30156112 30157995 -87704632 - L1MA7 LINE L1 -1 7709 5832 1341 143 98 0 chr9 30157997 30158241 -87704386 - Tigger5 DNA MER2_type 0 2323 2056 260 245 0 0 chr9 30158247 30158300 -87704327 - Tigger5 DNA MER2_type -2270 53 1 903 124 20 80 chr9 30158301 30158502 -87704125 - L1MA7 LINE L1 -1733 5832 5644 5478 225 22 8 chr9 30158527 30159973 -87702654 - L1MA7 LINE L1 -2596 4969 3505 1262 304 5 29 chr9 30159980 30160391 -87702236 - L1MA7 LINE L1 -5880 1616 1216 22 0 0 0 chr9 30160394 30160416 -87702211 + AT_rich Low_complexity Low_complexity 1 22 0 268 326 61 10 chr9 30160869 30160967 -87701660 + MIR SINE MIR 19 121 -87 22 0 0 0 chr9 30161045 30161067 -87701560 + AT_rich Low_complexity Low_complexity 1 22 0 339 279 254 15 chr9 30161081 30161282 -87701345 + MLT1J1 LTR MaLR 21 269 -177 43020 41 7 3 chr9 30161291 30167410 -87695217 + L1PA3 LINE L1 8 6154 -1 304 313 10 0 chr9 30167557 30167653 -87694974 + MLT1J2 LTR MaLR 354 450 0 750 165 0 0 chr9 30168525 30168646 -87693981 + FLAM_C SINE Alu 1 121 -12 200 306 32 16 chr9 30168706 30168768 -87693859 - L2 LINE L2 -3 3269 3207 2163 96 0 0 chr9 30168918 30169223 -87693404 + AluY SINE Alu 1 305 0 532 338 40 15 chr9 30169277 30169478 -87693149 - MIR SINE MIR -34 228 23 320 309 0 0 chr9 30169540 30169621 -87693006 + MER117 DNA MER1_type 100 180 -17 23 0 0 0 chr9 30171862 30171885 -87690742 + AT_rich Low_complexity Low_complexity 1 23 0 302 223 7 159 chr9 30172264 30172565 -87690062 - MER112 DNA MER1_type 0 256 2 264 122 0 0 chr9 30173002 30173043 -87689584 + MADE1 DNA Mariner 1 41 -39 1824 210 66 16 chr9 30174214 30174656 -87687971 + MLT1C LTR MaLR 3 466 -1 180 342 26 0 chr9 30175982 30176058 -87686569 - MIR SINE MIR -138 124 47 742 314 50 0 chr9 30176171 30176410 -87686217 + MIR SINE MIR 11 261 -1 212 143 0 0 chr9 30176679 30176714 -87685913 + (CA)n Simple_repeat Simple_repeat 2 36 0 914 190 103 115 chr9 30176764 30176977 -87685650 + MER2 DNA MER2_type 2 211 -134 1349 207 4 0 chr9 30176977 30177214 -87685413 + MER8 DNA MER2_type 2 239 0 914 190 103 115 chr9 30177214 30177348 -87685279 + MER2 DNA MER2_type 211 345 0 200 265 0 0 chr9 30178195 30178244 -87684383 + MIR3 SINE MIR 129 177 -31 500 318 41 0 chr9 30179125 30179295 -87683332 - L2 LINE L2 -944 2370 2194 7006 54 0 1 chr9 30179304 30180171 -87682456 - L1PA5 LINE L1 -1 6153 5288 11897 51 3 2 chr9 30180171 30181694 -87680933 + L1PA5 LINE L1 3753 5277 -869 478 331 25 0 chr9 30181694 30181851 -87680776 - L2 LINE L2 -1109 2205 2045 899 118 15 0 chr9 30182151 30182287 -87680340 + AluSg/x SINE Alu 171 308 -1 425 278 43 9 chr9 30182319 30182434 -87680193 + MIR SINE MIR 51 169 -93 21 0 0 0 chr9 30182555 30182576 -87680051 + AT_rich Low_complexity Low_complexity 1 21 0 407 329 110 9 chr9 30183354 30183452 -87679175 - MIR SINE MIR 0 262 175 2001 140 0 0 chr9 30183452 30183745 -87678882 + AluSx SINE Alu 1 293 -19 407 329 110 9 chr9 30183745 30183874 -87678753 - MIR SINE MIR -87 175 12 954 205 15 0 chr9 30186486 30186686 -87675941 + L1PB4 LINE L1 5953 6155 -1 1095 249 14 0 chr9 30186761 30186982 -87675645 - MER58A DNA MER1_type 0 224 1 619 311 65 20 chr9 30188881 30189232 -87673395 + L1PA12 LINE L1 1 367 -7214 259 77 0 96 chr9 30189333 30189385 -87673242 + L1PA16 LINE L1 5725 5771 -395 338 173 10 0 chr9 30189385 30189489 -87673138 + (TA)n Simple_repeat Simple_repeat 2 106 0 1656 168 6 52 chr9 30189489 30189853 -87672774 + L1PA16 LINE L1 5819 6165 -1 899 257 29 33 chr9 30189856 30190101 -87672526 - MIR SINE MIR -15 247 4 22 0 0 0 chr9 30190480 30190502 -87672125 + AT_rich Low_complexity Low_complexity 1 22 0 233 352 44 22 chr9 30190993 30191084 -87671543 + L2 LINE L2 3167 3259 -13 200 213 0 0 chr9 30192284 30192331 -87670296 + (TTAAA)n Simple_repeat Simple_repeat 3 49 0 2054 106 3 3 chr9 30192753 30193037 -87669590 + AluSg SINE Alu 1 284 -26 629 58 0 11 chr9 30193037 30193124 -87669503 + (GGAA)n Simple_repeat Simple_repeat 3 88 0 21 0 0 0 chr9 30193586 30193607 -87669020 + AT_rich Low_complexity Low_complexity 1 21 0 229 353 12 24 chr9 30194225 30194310 -87668317 + L2 LINE L2 3229 3312 -1 24 0 0 0 chr9 30194816 30194840 -87667787 + AT_rich Low_complexity Low_complexity 1 24 0 197 256 221 0 chr9 30195717 30195803 -87666824 + L2 LINE L2 3168 3272 0 2042 182 83 9 chr9 30196918 30197385 -87665242 - L1MA8 LINE L1 -2 6289 5788 1482 182 25 7 chr9 30197402 30197682 -87664945 - AluJo SINE Alu -4 308 24 21 36 0 0 chr9 30198307 30198335 -87664292 + AT_rich Low_complexity Low_complexity 1 28 0 1824 170 0 0 chr9 30198725 30199014 -87663613 - AluSx SINE Alu -23 289 1 282 369 74 23 chr9 30199129 30199305 -87663322 + MIR SINE MIR 49 233 -29 315 65 0 0 chr9 30199806 30199852 -87662775 + (GA)n Simple_repeat Simple_repeat 1 46 0 1012 251 49 0 chr9 30199888 30200111 -87662516 + MLT1H LTR MaLR 58 291 -258 345 367 130 0 chr9 30200561 30200730 -87661897 + MIR SINE MIR 1 191 -71 842 247 140 2 chr9 30201692 30202207 -87660420 - L1MD3 LINE L1 -11 7984 7145 1275 263 88 55 chr9 30202219 30202622 -87660005 + HsTC2a DNA Tc2 3 391 -1509 243 0 0 0 chr9 30202622 30202649 -87659978 + (TGG)n Simple_repeat Simple_repeat 3 29 0 261 0 0 0 chr9 30202649 30202678 -87659949 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 1966 127 0 0 chr9 30202683 30202959 -87659668 - AluSx SINE Alu -36 276 1 1275 263 88 55 chr9 30202959 30203205 -87659422 + HsTC2a DNA Tc2 394 681 -63 381 232 113 13 chr9 30203802 30203953 -87658674 - MER112 DNA MER1_type -88 172 7 864 222 26 10 chr9 30204082 30204276 -87658351 - MER3 DNA MER1_type -11 198 2 189 0 0 0 chr9 30204755 30204776 -87657851 + (TA)n Simple_repeat Simple_repeat 1 21 0 24 0 0 0 chr9 30205011 30205035 -87657592 + AT_rich Low_complexity Low_complexity 1 24 0 1770 150 0 7 chr9 30205199 30205473 -87657154 + AluSx SINE Alu 25 296 -16 212 245 0 0 chr9 30205496 30205545 -87657082 + (TGAA)n Simple_repeat Simple_repeat 1 49 0 212 235 78 0 chr9 30205765 30205816 -87656811 + MIR SINE MIR 47 101 -107 24 0 0 0 chr9 30205938 30205962 -87656665 + AT_rich Low_complexity Low_complexity 1 24 0 394 250 40 0 chr9 30206542 30206642 -87655985 - MIR3 SINE MIR -1 207 104 349 362 40 0 chr9 30209176 30209350 -87653277 + MIR SINE MIR 79 259 -3 993 236 129 10 chr9 30209417 30209819 -87652808 - L1ME LINE L1 -346 5816 5367 2262 220 49 49 chr9 30212622 30213664 -87648963 + L1MD1 LINE L1 4490 5575 -784 297 119 0 0 chr9 30213664 30213706 -87648921 + 5S rRNA rRNA 1 42 -79 2262 220 49 49 chr9 30213706 30213976 -87648651 + L1MD1 LINE L1 5575 5844 -515 663 163 0 8 chr9 30214077 30214200 -87648427 - L1MA8 LINE L1 -6 6285 6164 939 204 29 37 chr9 30214205 30214450 -87648177 + L1MD1 LINE L1 5831 6073 -169 282 185 74 0 chr9 30214455 30214536 -87648091 + L1MD2 LINE L1 6273 6359 0 255 291 46 86 chr9 30214692 30214843 -87647784 + MIR3 SINE MIR 18 162 -46 539 324 28 16 chr9 30215431 30215681 -87646946 + MIR SINE MIR 8 260 -2 768 278 49 4 chr9 30215915 30216160 -87646467 + L1MC4a LINE L1 5521 5776 -2032 1590 147 18 70 chr9 30216166 30216493 -87646134 - Tigger7 DNA MER2_type -1 2486 2177 1374 221 4 29 chr9 30216498 30216778 -87645849 - Tigger7 DNA MER2_type -2214 273 1 577 261 0 28 chr9 30216778 30216954 -87645673 + L1MC4a LINE L1 5780 5950 -1858 488 139 9 83 chr9 30216947 30217055 -87645572 + L1MA1 LINE L1 3877 3976 -2170 * 3308 212 18 0 chr9 30217061 30217720 -87644907 - L1P4 LINE L1 -1473 4673 4003 2421 188 18 0 chr9 30217729 30218235 -87644392 + L1P4 LINE L1 4680 5194 -952 1555 119 0 0 chr9 30218235 30218445 -87644182 + AluSx SINE Alu 1 210 -102 246 89 36 36 chr9 30218445 30218501 -87644126 + AluSx SINE Alu 247 302 0 1977 96 58 16 chr9 30218519 30218911 -87643716 + L1P4 LINE L1 5176 5576 -585 6847 142 21 27 chr9 30218912 30219257 -87643370 + L1MA1 LINE L1 3988 4334 -1968 1839 161 0 31 chr9 30219257 30219579 -87643048 + AluSx SINE Alu 1 312 0 6847 142 21 27 chr9 30219579 30221472 -87641155 + L1MA1 LINE L1 4334 6211 -91 2051 110 14 0 chr9 30221472 30221762 -87640865 - AluSx SINE Alu -18 294 1 6847 142 21 27 chr9 30221762 30221854 -87640773 + L1MA1 LINE L1 6211 6302 0 414 237 0 46 chr9 30221861 30221992 -87640635 + L1MC4a LINE L1 5925 6049 -1759 2352 156 100 8 chr9 30222444 30222913 -87639714 - L1MC1 LINE L1 -18 6315 5804 644 310 39 0 chr9 30223199 30223402 -87639225 + MIR SINE MIR 28 238 -24 398 184 13 0 chr9 30223444 30223520 -87639107 + MER116 DNA Mariner 4 80 0 489 86 0 0 chr9 30224781 30224858 -87637769 - L1PA4 LINE L1 -164 5992 5916 1340 25 0 0 chr9 30224858 30225010 -87637617 + L1PA4 LINE L1 5994 6152 -3 28 29 0 0 chr9 30225394 30225429 -87637198 + AT_rich Low_complexity Low_complexity 1 35 0 2151 108 0 0 chr9 30226378 30226673 -87635954 + AluSx SINE Alu 4 298 -14 1167 177 5 5 chr9 30226779 30226994 -87635633 - L1MB1 LINE L1 -302 5866 5652 5680 144 25 39 chr9 30227007 30228702 -87633925 - L1PB1 LINE L1 -1 6150 4482 1690 305 69 44 chr9 30228843 30230274 -87632353 + L1ME1 LINE L1 117 1583 -4813 1780 255 97 24 chr9 30230413 30230766 -87631861 + L1ME1 LINE L1 4382 4708 -1507 512 111 12 0 chr9 30230766 30230882 -87631745 + L1MA2 LINE L1 6220 6336 0 1780 255 97 24 chr9 30230882 30231366 -87631261 + L1ME1 LINE L1 4708 5281 -934 890 264 119 56 chr9 30231369 30232577 -87630050 + L1ME LINE L1 19 1301 -4779 410 195 47 22 chr9 30232563 30232684 -87629943 + L1ME1 LINE L1 5835 5965 -282 * 4307 187 32 17 chr9 30232692 30234219 -87628408 + L1MB3 LINE L1 4548 6094 -89 1779 153 20 7 chr9 30234845 30235139 -87627488 - AluSq SINE Alu -15 298 1 193 330 71 36 chr9 30235313 30235425 -87627202 + MIR SINE MIR 146 261 -1 2005 173 16 3 chr9 30236650 30237037 -87625590 - L1P LINE L1 -931 5215 4824 28 29 0 0 chr9 30239016 30239051 -87623576 + AT_rich Low_complexity Low_complexity 1 35 0 21 71 0 0 chr9 30239633 30239675 -87622952 + AT_rich Low_complexity Low_complexity 1 42 0 237 363 137 6 chr9 30239917 30240085 -87622542 + L3 LINE CR1 411 600 -977 699 339 140 36 chr9 30240097 30240741 -87621886 + L3 LINE CR1 707 1417 -160 207 344 44 11 chr9 30241185 30241275 -87621352 + L3 LINE CR1 1484 1576 -1 210 143 0 0 chr9 30241503 30241538 -87621089 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 312 223 115 46 chr9 30241547 30241677 -87620950 - MIR SINE MIR -59 203 65 22 56 0 0 chr9 30242306 30242342 -87620285 + AT_rich Low_complexity Low_complexity 1 36 0 314 240 10 19 chr9 30242472 30242576 -87620051 + (TA)n Simple_repeat Simple_repeat 1 103 0 441 0 0 0 chr9 30242593 30242642 -87619985 + (TATTG)n Simple_repeat Simple_repeat 2 50 0 777 237 0 7 chr9 30242642 30242794 -87619833 - FRAM SINE Alu -25 151 1 399 41 0 0 chr9 30242921 30242970 -87619657 + (TA)n Simple_repeat Simple_repeat 1 49 0 471 293 79 56 chr9 30243457 30243672 -87618955 + MIR SINE MIR 13 232 -30 467 245 5 92 chr9 30243765 30243949 -87618678 + L1MB7 LINE L1 6007 6174 -10 659 185 15 7 chr9 30244194 30244329 -87618298 + MER3 DNA MER1_type 47 182 -27 264 213 0 0 chr9 30244362 30244423 -87618204 + CT-rich Low_complexity Low_complexity 1 61 0 1023 252 75 6 chr9 30244844 30245162 -87617465 + MER58B DNA MER1_type 1 340 -1 2129 71 61 30 chr9 30246117 30246414 -87616213 - AluY SINE Alu -5 306 1 1027 230 77 38 chr9 30247325 30247612 -87615015 - AluJo SINE Alu 0 302 5 243 119 45 0 chr9 30248017 30248084 -87614543 + (TA)n Simple_repeat Simple_repeat 1 70 0 190 308 39 39 chr9 30248093 30248171 -87614456 - MIR SINE MIR -147 115 38 372 244 47 0 chr9 30248185 30248294 -87614333 + MIR SINE MIR 64 178 -30 188 301 124 26 chr9 30250252 30250365 -87612262 - MER5A DNA MER1_type -1 188 65 * 314 180 11 56 chr9 30250364 30250453 -87612174 - MIR SINE MIR -49 213 129 311 253 112 47 chr9 30251307 30251477 -87611150 - MIR SINE MIR -1 261 81 6954 50 8 8 chr9 30251492 30252414 -87610213 - L1PA5 LINE L1 -2604 3542 2618 14666 44 2 1 chr9 30252414 30255032 -87607595 + L1PA5 LINE L1 3539 6154 0 6954 50 8 8 chr9 30255032 30255049 -87607578 - L1P LINE L1 -3527 2619 2603 236 262 24 71 chr9 30256270 30256354 -87606273 + L2 LINE L2 3233 3312 -1 279 54 0 0 chr9 30256720 30256757 -87605870 + (A)n Simple_repeat Simple_repeat 1 37 0 241 374 75 14 chr9 30256819 30256966 -87605661 - MIR SINE MIR 0 262 107 223 244 0 115 chr9 30257211 30257289 -87605338 - MIR SINE MIR -101 161 93 260 325 70 9 chr9 30257869 30257983 -87604644 + MIR3 SINE MIR 38 158 -50 1950 105 60 3 chr9 30258330 30258615 -87604012 - AluSx SINE Alu -11 301 1 368 316 124 10 chr9 30258637 30258830 -87603797 + MIR SINE MIR 45 259 -3 267 347 21 35 chr9 30258869 30259013 -87603614 - MIR SINE MIR -120 142 1 601 278 106 20 chr9 30259226 30259424 -87603203 + MIR SINE MIR 35 249 -13 360 238 119 7 chr9 30259465 30259608 -87603019 + MIR SINE MIR 104 262 0 27 100 0 0 chr9 30260627 30260717 -87601910 + AT_rich Low_complexity Low_complexity 1 90 0 407 252 65 0 chr9 30261301 30261408 -87601219 + L2 LINE L2 3196 3309 -4 24 32 0 0 chr9 30261492 30261523 -87601104 + AT_rich Low_complexity Low_complexity 1 31 0 256 328 85 53 chr9 30261754 30262001 -87600626 + L2 LINE L2 3018 3272 0 21 36 0 0 chr9 30262195 30262223 -87600404 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr9 30262771 30262793 -87599834 + AT_rich Low_complexity Low_complexity 1 22 0 617 313 48 36 chr9 30263488 30263737 -87598890 - MIR SINE MIR 0 262 11 277 80 20 20 chr9 30264445 30264495 -87598132 + (TA)n Simple_repeat Simple_repeat 2 51 0 309 68 0 0 chr9 30264496 30264540 -87598087 + (GA)n Simple_repeat Simple_repeat 1 44 0 30 83 0 0 chr9 30264825 30264897 -87597730 + AT_rich Low_complexity Low_complexity 1 72 0 25 83 0 0 chr9 30264931 30264991 -87597636 + AT_rich Low_complexity Low_complexity 1 60 0 249 317 32 0 chr9 30265848 30265971 -87596656 - MIR SINE MIR -6 202 75 1279 219 25 7 chr9 30265984 30266310 -87596317 + MER33 DNA MER1_type 1 324 0 207 0 0 0 chr9 30266867 30266890 -87595737 + (TAA)n Simple_repeat Simple_repeat 2 24 0 2112 138 0 0 chr9 30267712 30268024 -87594603 - AluSx SINE Alu 0 312 1 21 36 0 0 chr9 30268349 30268377 -87594250 + AT_rich Low_complexity Low_complexity 1 28 0 434 320 83 45 chr9 30269756 30269887 -87592740 - L2 LINE L2 -143 3129 3004 336 102 0 0 chr9 30269887 30269936 -87592691 + (CA)n Simple_repeat Simple_repeat 2 50 0 434 320 83 45 chr9 30269936 30270301 -87592326 - L2 LINE L2 -268 3004 2623 5867 153 8 39 chr9 30270302 30271753 -87590874 + L1MA2 LINE L1 4621 6013 -291 1931 138 10 3 chr9 30271753 30272044 -87590583 + AluSx SINE Alu 1 293 -19 5867 153 8 39 chr9 30272044 30272328 -87590299 + L1MA2 LINE L1 6013 6304 0 200 338 26 0 chr9 30272358 30272435 -87590192 - L2 LINE L2 -685 2629 2551 2165 99 13 89 chr9 30272928 30273320 -87589307 - L1MA2 LINE L1 -259 6046 5685 2318 81 0 0 chr9 30273523 30273819 -87588808 - AluY SINE Alu -15 296 1 33 56 0 0 chr9 30274964 30275018 -87587609 + AT_rich Low_complexity Low_complexity 1 54 0 580 277 110 15 chr9 30275287 30275506 -87587121 + MIR SINE MIR 17 254 -8 1907 120 141 46 chr9 30275618 30276009 -87586618 + MSTA LTR MaLR 1 428 0 235 394 81 6 chr9 30276343 30276503 -87586124 - MIR3 SINE MIR -7 201 30 965 239 152 115 chr9 30276973 30277564 -87585063 + MLT1E1 LTR MaLR 42 654 0 199 261 108 0 chr9 30277769 30277834 -87584793 - MIR SINE MIR -70 192 121 180 346 48 19 chr9 30277952 30278056 -87584571 + L2 LINE L2 3207 3313 0 333 329 67 7 chr9 30278187 30278336 -87584291 - MIR SINE MIR -74 188 31 2368 45 0 7 chr9 30281763 30282072 -87580555 - AluY SINE Alu 0 307 1 2241 83 3 0 chr9 30282126 30282427 -87580200 - AluY SINE Alu -9 302 1 230 160 20 0 chr9 30282914 30282964 -87579663 + (TA)n Simple_repeat Simple_repeat 2 52 0 253 200 0 14 chr9 30283276 30283346 -87579281 + L1MCa LINE L1 1996 2064 -4362 209 145 16 65 chr9 30283458 30283520 -87579107 + (TATATG)n Simple_repeat Simple_repeat 4 62 0 773 232 28 6 chr9 30283685 30283866 -87578761 + MER5A DNA MER1_type 5 189 0 454 326 118 0 chr9 30284265 30284452 -87578175 - MIR SINE MIR -11 251 43 6282 153 27 4 chr9 30284533 30285615 -87577012 + HSMAR2 DNA Mariner 9 1115 -187 360 0 0 0 chr9 30285819 30285859 -87576768 + (TTA)n Simple_repeat Simple_repeat 3 42 0 3280 40 2 2 chr9 30285859 30286259 -87576368 - L1PA4 LINE L1 -18 6137 5738 1088 163 5 0 chr9 30286271 30286455 -87576172 + HSMAR2 DNA Mariner 1115 1299 -3 21 57 0 0 chr9 30286707 30286742 -87575885 + AT_rich Low_complexity Low_complexity 1 35 0 257 338 165 0 chr9 30288426 30288559 -87574068 + MIR SINE MIR 87 241 -21 1084 306 67 16 chr9 30288561 30288707 -87573920 - LTR16A1 LTR ERVL -2 455 318 525 241 116 60 chr9 30288707 30288906 -87573721 + MER63A DNA MER1_type 1 210 0 1084 306 67 16 chr9 30288906 30289191 -87573436 - LTR16A1 LTR ERVL -139 318 2 1340 307 101 22 chr9 30289853 30290619 -87572008 + L1M3a LINE L1 2 728 -5227 837 158 49 18 chr9 30290616 30290780 -87571847 + L1 LINE L1 5128 5296 -850 * 1968 97 3 45 chr9 30291016 30291304 -87571323 - AluSx SINE Alu -4 308 33 463 340 88 4 chr9 30292142 30292380 -87570247 + MIR SINE MIR 3 260 -2 21 36 0 0 chr9 30292729 30292757 -87569870 + AT_rich Low_complexity Low_complexity 1 28 0 282 316 117 0 chr9 30292967 30293173 -87569454 + HAL1 LINE L1 1188 1417 -1090 314 292 21 0 chr9 30293195 30293291 -87569336 - HAL1 LINE L1 -976 1531 1434 239 250 91 0 chr9 30293394 30293482 -87569145 + HAL1 LINE L1 2323 2418 -89 27 73 0 0 chr9 30293567 30293622 -87569005 + AT_rich Low_complexity Low_complexity 1 55 0 533 259 152 13 chr9 30294348 30294506 -87568121 - MER5A DNA MER1_type 0 189 10 25 51 0 0 chr9 30295103 30295142 -87567485 + AT_rich Low_complexity Low_complexity 1 39 0 6795 66 6 3 chr9 30295406 30296872 -87565755 + L1PA8 LINE L1 4698 6164 -8 408 308 9 3 chr9 30297662 30297800 -87564827 + MIR SINE MIR 10 146 -62 3084 133 144 32 chr9 30298212 30298782 -87563845 + MER51A LTR ERV1 1 634 0 2252 169 48 86 chr9 30298782 30299326 -87563301 + MER51A-int LTR ERV1 1 523 -7293 1795 209 14 41 chr9 30299379 30299903 -87562724 + MER51A-int LTR ERV1 524 1007 -3873 * 8049 137 65 16 chr9 30299873 30301387 -87561240 + HERV9 LTR ERV1 455 2043 -6077 778 151 108 11 chr9 30301397 30301583 -87561044 + HERV9 LTR ERV1 3322 3525 -2421 * 910 334 31 31 chr9 30301581 30302432 -87560195 + HERV9 LTR ERV1 4624 6156 -1600 292 185 19 0 chr9 30302600 30302654 -87559973 + HERV9 LTR ERV1 7488 7542 -274 274 263 26 26 chr9 30302807 30302921 -87559706 + HERV9 LTR ERV1 6662 6775 -1624 1504 168 4 0 chr9 30303399 30303655 -87558972 + HERV9 LTR ERV1 7558 7814 -2 2206 112 87 1 chr9 30303661 30304163 -87558464 + MER51A LTR ERV1 1 616 -18 724 193 0 30 chr9 30304321 30304456 -87558171 - FLAM_A SINE Alu 0 133 3 188 340 10 30 chr9 30304483 30304583 -87558044 + L2 LINE L2 2610 2707 -607 382 308 25 17 chr9 30304917 30305037 -87557590 - MIR SINE MIR -69 139 19 382 225 108 0 chr9 30306033 30306153 -87556474 - L1ME4a LINE L1 -237 5884 5752 2163 121 0 0 chr9 30306716 30307014 -87555613 + AluSg SINE Alu 1 298 -12 1885 143 76 12 chr9 30307068 30307410 -87555217 - L1MB2 LINE L1 0 6171 5808 425 339 135 28 chr9 30307659 30308311 -87554316 + L2 LINE L2 1625 2346 -968 216 388 39 8 chr9 30308641 30308770 -87553857 + MIR3 SINE MIR 69 201 -7 721 297 31 9 chr9 30309218 30309447 -87553180 + MIR SINE MIR 29 262 0 202 315 41 0 chr9 30310113 30310186 -87552441 - MIR SINE MIR -89 173 98 1773 260 58 30 chr9 30310278 30310847 -87551780 + MLT1E LTR MaLR 1 585 -8 23 0 0 0 chr9 30310853 30310876 -87551751 + AT_rich Low_complexity Low_complexity 1 23 0 880 342 26 6 chr9 30310954 30311305 -87551322 + L1M3d LINE L1 423 780 -5523 3142 252 98 25 chr9 30311477 30314028 -87548599 + L1M3d LINE L1 777 3409 -2973 4102 197 33 42 chr9 30314053 30315113 -87547514 + L1M3d LINE L1 4195 5245 -1137 3910 173 17 4 chr9 30315110 30315831 -87546796 - L1P LINE L1 -895 5251 4522 * 228 189 19 19 chr9 30317306 30317379 -87545248 + (TATG)n Simple_repeat Simple_repeat 1 73 0 1631 101 4 0 chr9 30317595 30317822 -87544805 + AluSc SINE Alu 82 309 0 323 68 356 0 chr9 30317858 30317917 -87544710 + MADE1 DNA Mariner 1 80 0 23 78 0 0 chr9 30318597 30318648 -87543979 + AT_rich Low_complexity Low_complexity 1 51 0 221 276 38 57 chr9 30319789 30319894 -87542733 - MIR SINE MIR -103 159 57 23 54 0 0 chr9 30320623 30320660 -87541967 + AT_rich Low_complexity Low_complexity 1 37 0 295 244 47 0 chr9 30320706 30320792 -87541835 + AluJo SINE Alu 62 151 -151 723 351 31 74 chr9 30320793 30321400 -87541227 + L1PA13 LINE L1 798 1378 -6196 4684 249 32 18 chr9 30321503 30323331 -87539296 + L1PA13 LINE L1 2203 4069 -3515 251 262 36 0 chr9 30323338 30323422 -87539205 + L1PA13 LINE L1 4847 4933 -2651 * 5032 143 31 0 chr9 30323411 30324241 -87538386 + L1PA16 LINE L1 5301 6156 -10 28 29 0 0 chr9 30324242 30324277 -87538350 + AT_rich Low_complexity Low_complexity 1 35 0 2371 55 0 19 chr9 30325601 30325909 -87536718 + AluY SINE Alu 1 302 -9 280 286 158 41 chr9 30326339 30326535 -87536092 + MIR SINE MIR 17 235 -27 1448 187 6 48 chr9 30329499 30329814 -87532813 + AluJo SINE Alu 1 302 -10 228 167 0 0 chr9 30330165 30330213 -87532414 + (TG)n Simple_repeat Simple_repeat 1 48 0 * 255 103 0 0 chr9 30330212 30330251 -87532376 + (GA)n Simple_repeat Simple_repeat 1 39 0 1844 101 19 4 chr9 30331013 30331270 -87531357 + AluSq SINE Alu 1 261 -52 181 273 18 0 chr9 30331334 30331389 -87531238 - MIR SINE MIR -82 180 125 853 254 0 5 chr9 30331489 30331678 -87530949 - MER5A DNA MER1_type -1 188 1 500 293 153 22 chr9 30331719 30331941 -87530686 + MIR SINE MIR 2 252 -10 3044 128 64 66 chr9 30332217 30332826 -87529801 + LTR18B LTR ERVL 1 608 -6 848 217 44 6 chr9 30332970 30333150 -87529477 - MER5A DNA MER1_type -1 188 2 2085 135 0 0 chr9 30333362 30333658 -87528969 - AluSx SINE Alu -16 296 1 26 64 0 0 chr9 30334157 30334204 -87528423 + AT_rich Low_complexity Low_complexity 1 47 0 210 219 0 0 chr9 30334404 30334445 -87528182 + GA-rich Low_complexity Low_complexity 2 42 0 1615 290 98 17 chr9 30335249 30335791 -87526836 + MLT1G1 LTR MaLR 3 588 -7 225 65 0 0 chr9 30336144 30336175 -87526452 + (CA)n Simple_repeat Simple_repeat 2 32 0 349 175 33 183 chr9 30336699 30336819 -87525808 - L2 LINE L2 -9 3304 3203 233 244 221 12 chr9 30337851 30337937 -87524690 + MER102b DNA MER1_type 235 338 -3 273 359 46 23 chr9 30339521 30339652 -87522975 + MIR SINE MIR 16 149 -59 519 322 44 67 chr9 30339833 30340193 -87522434 + MLT1L LTR MaLR 127 478 -137 2072 117 27 0 chr9 30340386 30340686 -87521941 - AluSx SINE Alu -4 308 1 5371 122 24 15 chr9 30340814 30341159 -87521468 + L1PB4 LINE L1 5237 5577 -579 1903 112 24 0 chr9 30341159 30341472 -87521155 + AluSc SINE Alu 1 309 0 5371 122 24 15 chr9 30341472 30342038 -87520589 + L1PB4 LINE L1 5577 6156 0 323 315 132 21 chr9 30342208 30342443 -87520184 + L1MC/D LINE L1 5356 5616 -2192 343 242 48 21 chr9 30343010 30343179 -87519448 + L1MC/D LINE L1 5712 5891 -230 21 0 0 0 chr9 30344006 30344027 -87518600 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 30345230 30345251 -87517376 + AT_rich Low_complexity Low_complexity 1 21 0 2096 132 0 0 chr9 30346417 30346713 -87515914 + AluSg SINE Alu 1 296 -14 2125 79 0 0 chr9 30346961 30347227 -87515400 - AluSg SINE Alu -8 302 37 21 0 0 0 chr9 30347268 30347289 -87515338 + AT_rich Low_complexity Low_complexity 1 21 0 428 285 106 0 chr9 30347517 30347668 -87514959 - MIR SINE MIR -11 251 85 273 257 14 14 chr9 30348761 30348831 -87513796 - MIR SINE MIR -118 144 75 431 220 121 38 chr9 30348870 30349002 -87513625 + MER69A DNA AcHobo 33 175 -2 1786 151 0 0 chr9 30349486 30349774 -87512853 - AluSq SINE Alu 0 308 21 233 245 0 0 chr9 30349827 30349880 -87512747 + (TTTA)n Simple_repeat Simple_repeat 1 53 0 270 324 88 14 chr9 30350099 30350247 -87512380 - L2 LINE L2 -189 3083 2925 502 274 0 32 chr9 30350280 30350404 -87512223 + FLAM_A SINE Alu 1 120 -13 234 0 0 0 chr9 30350404 30350430 -87512197 + (TTAA)n Simple_repeat Simple_repeat 2 27 0 396 0 0 0 chr9 30350597 30350641 -87511986 + (TA)n Simple_repeat Simple_repeat 2 45 0 2134 122 0 0 chr9 30350847 30351143 -87511484 - AluSx SINE Alu -16 296 1 221 185 0 19 chr9 30352294 30352348 -87510279 + A-rich Low_complexity Low_complexity 3 55 0 399 292 61 57 chr9 30352559 30352733 -87509894 + MIR SINE MIR 21 194 -52 23 33 0 0 chr9 30352771 30352801 -87509826 + AT_rich Low_complexity Low_complexity 1 30 0 209 349 58 0 chr9 30353389 30353475 -87509152 + MER91C DNA MER1_type 50 140 0 286 259 19 83 chr9 30355011 30355119 -87507508 + L2 LINE L2 3213 3313 0 394 161 35 0 chr9 30356103 30356190 -87506437 + CT-rich Low_complexity Low_complexity 3 92 0 931 295 127 28 chr9 30356360 30356858 -87505769 - MLT1H LTR MaLR -2 547 1 249 363 39 10 chr9 30357516 30357618 -87505009 + MIR3 SINE MIR 89 193 -15 341 290 84 0 chr9 30358218 30358325 -87504302 + MIR SINE MIR 121 236 -26 255 330 9 28 chr9 30358472 30358581 -87504046 - MIR SINE MIR -86 122 16 189 0 0 0 chr9 30359219 30359240 -87503387 + (T)n Simple_repeat Simple_repeat 1 21 0 21 57 0 0 chr9 30359409 30359444 -87503183 + AT_rich Low_complexity Low_complexity 1 35 0 6364 63 12 94 chr9 30359456 30360495 -87502132 - SVA Other Other 0 1386 433 5834 54 17 60 chr9 30360599 30361504 -87501123 - SVA Other Other -520 866 1 25 0 0 0 chr9 30361576 30361601 -87501026 + AT_rich Low_complexity Low_complexity 1 25 0 28 29 0 0 chr9 30361717 30361752 -87500875 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr9 30362147 30362168 -87500459 + AT_rich Low_complexity Low_complexity 1 21 0 269 277 62 0 chr9 30363185 30363250 -87499377 - L2 LINE L2 -16 3256 3188 440 256 26 103 chr9 30364250 30364406 -87498221 + MER91A DNA MER1_type 9 152 -44 240 268 134 18 chr9 30365447 30365631 -87496996 + MIR SINE MIR 42 247 -15 2330 231 75 26 chr9 30366193 30366463 -87496164 - L1MD2 LINE L1 -73 6286 6017 568 286 30 90 chr9 30366463 30366784 -87495843 - L1MB8 LINE L1 -171 6007 5729 285 51 0 0 chr9 30366784 30366823 -87495804 + (TG)n Simple_repeat Simple_repeat 2 40 0 568 286 30 90 chr9 30366823 30367032 -87495595 - L1MB8 LINE L1 -449 5729 5509 575 216 93 25 chr9 30367321 30367483 -87495144 + MER105 DNA DNA 31 203 -1 24 32 0 0 chr9 30368916 30368947 -87493680 + AT_rich Low_complexity Low_complexity 1 31 0 582 310 42 61 chr9 30370411 30370788 -87491839 - MLT1I LTR MaLR -13 396 27 3074 157 43 12 chr9 30371970 30372556 -87490071 - L1MC3 LINE L1 -2 7783 7180 256 240 40 13 chr9 30372556 30372631 -87489996 - MLT1F1 LTR MaLR -456 111 35 511 175 29 0 chr9 30372631 30372734 -87489893 - L1MC3 LINE L1 -688 7097 6992 300 125 0 18 chr9 30372759 30372815 -87489812 - L1MB8 LINE L1 -5 6173 6119 296 326 30 53 chr9 30373286 30373418 -87489209 - MIR SINE MIR -61 147 19 28 29 0 0 chr9 30373616 30373651 -87488976 + AT_rich Low_complexity Low_complexity 1 35 0 190 374 30 0 chr9 30374754 30374853 -87487774 + L3 LINE CR1 1452 1553 -24 311 285 15 80 chr9 30375837 30375974 -87486653 + L2 LINE L2 3141 3268 -4 269 191 48 0 chr9 30376111 30376174 -87486453 - L1ME LINE L1 -369 5793 5728 * 2142 241 90 10 chr9 30376158 30376495 -87486132 - L1ME LINE L1 -1894 4252 3943 1947 110 57 3 chr9 30376495 30376777 -87485850 - AluSc SINE Alu -12 297 1 2142 241 90 10 chr9 30376777 30377141 -87485486 - L1ME LINE L1 -2203 3943 3495 1474 225 45 5 chr9 30377155 30377555 -87485072 - L1MB8 LINE L1 -1 6177 5762 240 253 25 13 chr9 30377562 30377641 -87484986 - L1ME LINE L1 -2634 3512 3433 418 305 43 65 chr9 30377675 30377954 -87484673 - L1MB8 LINE L1 -463 5658 5386 258 250 0 0 chr9 30378450 30378522 -87484105 + (TA)n Simple_repeat Simple_repeat 1 72 0 295 213 28 28 chr9 30378537 30378645 -87483982 + (TA)n Simple_repeat Simple_repeat 1 108 0 24 0 0 0 chr9 30379905 30379929 -87482698 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr9 30380030 30380051 -87482576 + AT_rich Low_complexity Low_complexity 1 21 0 265 345 47 14 chr9 30380147 30380306 -87482321 - MIR SINE MIR -57 151 3 21 36 0 0 chr9 30380790 30380818 -87481809 + AT_rich Low_complexity Low_complexity 1 28 0 207 162 0 0 chr9 30380935 30380972 -87481655 + GA-rich Low_complexity Low_complexity 3 39 0 21 0 0 0 chr9 30381089 30381110 -87481517 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 30382132 30382154 -87480473 + AT_rich Low_complexity Low_complexity 1 22 0 256 24 24 24 chr9 30382987 30383029 -87479598 + (TTCTC)n Simple_repeat Simple_repeat 5 46 0 373 300 148 77 chr9 30383517 30384023 -87478604 + L1M2 LINE L1 359 900 -5949 22 0 0 0 chr9 30384028 30384050 -87478577 + AT_rich Low_complexity Low_complexity 1 22 0 26 50 0 0 chr9 30384902 30384942 -87477685 + GC_rich Low_complexity Low_complexity 1 40 0 241 235 0 0 chr9 30385029 30385080 -87477547 + (CACG)n Simple_repeat Simple_repeat 3 53 0 268 360 72 0 chr9 30388004 30388115 -87474512 + L2 LINE L2 3121 3239 -33 198 0 0 0 chr9 30388127 30388149 -87474478 + (ATG)n Simple_repeat Simple_repeat 3 24 0 253 338 120 40 chr9 30388156 30388381 -87474246 - MIR SINE MIR -12 250 8 787 149 13 1 chr9 30388724 30388862 -87473765 + L1MB1 LINE L1 6025 6176 -7 370 271 25 0 chr9 30389018 30389136 -87473491 + L1MC4a LINE L1 5781 5901 -1907 186 43 0 0 chr9 30389340 30389363 -87473264 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1212 196 12 154 chr9 30389473 30389896 -87472731 - MLT1A2 LTR MaLR -11 363 1 616 305 64 4 chr9 30390367 30390600 -87472027 - MIR SINE MIR 0 262 16 287 324 82 60 chr9 30390746 30390796 -87471831 - MIR SINE MIR -29 233 186 2127 130 0 3 chr9 30390796 30391095 -87471532 - AluSg SINE Alu -12 298 1 287 324 82 60 chr9 30391095 30391226 -87471401 - MIR SINE MIR -76 186 48 262 297 14 0 chr9 30391936 30392010 -87470617 + MIR SINE MIR 15 89 -173 1509 194 29 57 chr9 30392295 30392645 -87469982 + MLT1B LTR MaLR 47 386 -4 464 306 172 47 chr9 30393590 30393973 -87468654 - MLT1J LTR MaLR -53 458 28 25 0 0 0 chr9 30394221 30394246 -87468381 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr9 30394893 30394918 -87467709 + AT_rich Low_complexity Low_complexity 1 25 0 2318 115 3 0 chr9 30395291 30395603 -87467024 - AluSq SINE Alu 0 313 1 552 184 0 18 chr9 30395629 30395743 -87466884 - L1MA9 LINE L1 -36 6276 6165 218 276 10 31 chr9 30395743 30395774 -87466853 + (TA)n Simple_repeat Simple_repeat 2 32 -65 213 65 0 0 chr9 30395774 30395805 -87466822 + (TG)n Simple_repeat Simple_repeat 2 32 0 218 276 10 31 chr9 30395805 30395871 -87466756 + (TA)n Simple_repeat Simple_repeat 32 97 0 437 113 73 104 chr9 30395904 30396046 -87466581 + L1MA9 LINE L1 5975 6104 -196 26 30 0 0 chr9 30396277 30396310 -87466317 + AT_rich Low_complexity Low_complexity 1 33 0 2192 110 0 0 chr9 30396451 30396743 -87465884 + AluSc SINE Alu 1 292 -17 902 252 87 33 chr9 30396907 30397431 -87465196 - L1ME LINE L1 -389 5773 5214 240 286 48 0 chr9 30398843 30398906 -87463721 + L2 LINE L2 3201 3266 -6 698 348 159 21 chr9 30399654 30400637 -87461990 + L3 LINE CR1 76 1193 -384 230 270 79 11 chr9 30401019 30401108 -87461519 + L3 LINE CR1 1452 1546 -31 2638 154 66 16 chr9 30401379 30401700 -87460927 + MER41E LTR ERV1 1 357 -155 2023 117 4 0 chr9 30401700 30402005 -87460622 - AluSp SINE Alu 0 306 1 2638 154 66 16 chr9 30402005 30402170 -87460457 + MER41E LTR ERV1 357 512 0 397 321 130 40 chr9 30402322 30402721 -87459906 + L2 LINE L2 2863 3297 -16 380 314 17 46 chr9 30403402 30403577 -87459050 - MIR SINE MIR -92 170 1 499 223 13 107 chr9 30404268 30404456 -87458171 + MER63A DNA MER1_type 39 210 0 536 165 0 0 chr9 30404890 30404975 -87457652 - AluSg/x SINE Alu -39 270 186 309 296 75 75 chr9 30405296 30405482 -87457145 + MIR3 SINE MIR 23 208 0 1264 237 19 24 chr9 30405760 30406135 -87456492 + MLT1A2 LTR MaLR 1 467 0 263 210 80 70 chr9 30406683 30406783 -87455844 - MIR SINE MIR 0 262 162 414 279 29 15 chr9 30406840 30406976 -87455651 - MIR SINE MIR -105 157 20 238 378 61 65 chr9 30406976 30407254 -87455373 + L2 LINE L2 2990 3266 -6 25 51 0 0 chr9 30407437 30407476 -87455151 + AT_rich Low_complexity Low_complexity 1 39 0 21 57 0 0 chr9 30408682 30408717 -87453910 + AT_rich Low_complexity Low_complexity 1 35 0 1067 251 28 3 chr9 30409573 30409864 -87452763 - L1MA9 LINE L1 -39 6273 5976 563 200 8 8 chr9 30409862 30409992 -87452635 + L1MA9 LINE L1 5816 5945 -367 * 952 243 60 71 chr9 30410869 30411018 -87451609 - LTR16A1 LTR ERVL 0 457 308 1100 156 45 0 chr9 30411018 30411197 -87451430 + MER5A DNA MER1_type 3 189 0 952 243 60 71 chr9 30411197 30411413 -87451214 - LTR16A1 LTR ERVL -149 308 96 28 0 0 0 chr9 30413180 30413208 -87449419 + AT_rich Low_complexity Low_complexity 1 28 0 1967 210 32 0 chr9 30414016 30414420 -87448207 + L1PA16 LINE L1 5740 6156 -10 582 330 89 69 chr9 30415416 30416064 -87446563 + MLT2F LTR ERVL 3 663 0 264 59 0 0 chr9 30416473 30416507 -87446120 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 3131 299 33 18 chr9 30416890 30417915 -87444712 + ERVL-F LTR ERVL 3242 4282 -1482 260 245 142 9 chr9 30418012 30418118 -87444509 + ERVL-F LTR ERVL 5630 5749 -15 316 292 52 0 chr9 30418126 30418222 -87444405 + MLT2F LTR ERVL 4 104 -524 1277 116 0 0 chr9 30418240 30418412 -87444215 + AluSg/x SINE Alu 131 302 -10 909 276 148 30 chr9 30418459 30418893 -87443734 + MLT2F LTR ERVL 179 663 0 345 48 63 16 chr9 30419804 30419867 -87442760 + GA-rich Low_complexity Low_complexity 4 69 0 1218 54 0 7 chr9 30420768 30420941 -87441686 + AluY SINE Alu 144 315 0 183 331 113 33 chr9 30421226 30421377 -87441250 + MIR3 SINE MIR 16 178 -30 673 279 40 87 chr9 30422735 30423057 -87439570 + LTR16B LTR ERVL 3 309 -155 372 333 26 16 chr9 30423666 30423858 -87438769 + L3 LINE CR1 1207 1400 -177 237 125 54 0 chr9 30424466 30424522 -87438105 + (TA)n Simple_repeat Simple_repeat 2 60 0 1997 122 27 61 chr9 30424613 30424989 -87437638 + L1PA16 LINE L1 5801 6163 -3 345 24 0 0 chr9 30425390 30425432 -87437195 + (CA)n Simple_repeat Simple_repeat 2 43 0 333 300 94 12 chr9 30426994 30427154 -87435473 - MLT1L LTR MaLR -301 314 142 832 331 83 2 chr9 30428033 30428441 -87434186 - LTR16A LTR ERVL -2 448 8 2036 336 71 52 chr9 30428718 30430860 -87431767 - MERVL LTR ERVL -664 4821 2721 297 0 0 0 chr9 30430860 30430893 -87431734 + (CA)n Simple_repeat Simple_repeat 2 34 0 2036 336 71 52 chr9 30430893 30430911 -87431716 - MERVL LTR ERVL -2764 2721 2705 270 81 0 0 chr9 30430911 30430948 -87431679 + (TG)n Simple_repeat Simple_repeat 1 37 0 2036 336 71 52 chr9 30430948 30431231 -87431396 - MERVL LTR ERVL -2780 2705 2331 369 301 29 40 chr9 30431298 30431471 -87431156 - MERVL LTR ERVL -2762 2234 2064 428 347 43 20 chr9 30431489 30431789 -87430838 - MERVL LTR ERVL -3493 2161 1855 317 269 32 0 chr9 30431831 30431924 -87430703 - MERVL LTR ERVL -3214 1782 1687 2379 312 49 52 chr9 30431950 30433249 -87429378 - MERVL LTR ERVL -3426 1570 276 248 330 71 0 chr9 30433675 30433787 -87428840 - LTR16A LTR ERVL -322 128 9 216 0 0 0 chr9 30434233 30434257 -87428370 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 226 274 0 32 chr9 30434584 30434646 -87427981 - L2 LINE L2 -32 3281 3222 33 25 0 0 chr9 30435863 30435903 -87426724 + AT_rich Low_complexity Low_complexity 1 40 0 13520 141 43 7 chr9 30436121 30438450 -87424177 + Tigger1 DNA MER2_type 1 2414 -4 207 246 14 72 chr9 30438877 30438946 -87423681 + MIR3 SINE MIR 92 156 -52 327 203 0 0 chr9 30440003 30440077 -87422550 + (TA)n Simple_repeat Simple_repeat 1 74 0 340 324 176 11 chr9 30440188 30440460 -87422167 + L1ME3A LINE L1 4742 5058 -1088 1140 288 60 21 chr9 30440468 30441155 -87421472 + L1ME3A LINE L1 5114 5833 -337 21 57 0 0 chr9 30441236 30441271 -87421356 + AT_rich Low_complexity Low_complexity 1 35 0 42449 55 4 0 chr9 30441660 30447788 -87414839 + L1PA5 LINE L1 3 6154 0 531 312 41 41 chr9 30448514 30448732 -87413895 + MIR SINE MIR 2 219 -43 6814 186 28 46 chr9 30449408 30450922 -87411705 - L1P4 LINE L1 -642 5524 4061 1612 206 3 0 chr9 30450922 30451214 -87411413 - AluJb SINE Alu -17 295 3 6814 186 28 46 chr9 30451214 30451561 -87411066 - L1P4 LINE L1 -2105 4061 3709 3687 136 25 2 chr9 30451561 30452156 -87410471 + L1PA16 LINE L1 5555 6163 -3 629 249 56 42 chr9 30453002 30453215 -87409412 - MER20 DNA MER1_type -3 216 1 199 402 22 0 chr9 30454167 30454259 -87408368 + MIR3 SINE MIR 69 162 -46 255 347 127 20 chr9 30455573 30455723 -87406904 + MIR3 SINE MIR 18 183 -25 2121 172 85 7 chr9 30455874 30456310 -87406317 + MLT2B1 LTR ERVL 1 470 -50 2544 153 13 22 chr9 30456311 30456761 -87405866 - Tigger2 DNA MER2_type 0 2718 2273 337 232 0 0 chr9 30456751 30456820 -87405807 - Tigger2 DNA MER2_type -2649 69 1 * 316 258 0 17 chr9 30456821 30456941 -87405686 + (TA)n Simple_repeat Simple_repeat 2 119 0 278 122 0 0 chr9 30456949 30456990 -87405637 + MLT2B1 LTR ERVL 470 510 -5 555 234 82 35 chr9 30457311 30457482 -87405145 + LTR41 LTR ERVL 1 179 -594 307 77 77 11 chr9 30458178 30458269 -87404358 + (TA)n Simple_repeat Simple_repeat 1 97 0 975 158 0 0 chr9 30458270 30458416 -87404211 - FRAM SINE Alu -23 153 8 803 268 45 32 chr9 30458750 30459127 -87403500 - L1M4 LINE L1 -798 5348 4967 785 176 0 0 chr9 30459604 30459723 -87402904 + FLAM_C SINE Alu 1 119 -14 356 198 0 12 chr9 30459730 30459816 -87402811 + (TG)n Simple_repeat Simple_repeat 1 85 0 581 224 151 23 chr9 30460014 30460318 -87402309 + L1M4 LINE L1 4264 4606 -1540 489 172 0 0 chr9 30460397 30460490 -87402137 + (TATATG)n Simple_repeat Simple_repeat 2 94 0 948 215 39 5 chr9 30460523 30460728 -87401899 - MER20 DNA MER1_type -7 212 1 2335 149 20 2 chr9 30460789 30461185 -87401442 - MER57A LTR ERV1 0 403 1 431 320 51 11 chr9 30461458 30461636 -87400991 + LTR16C LTR ERVL 307 491 0 26 50 0 0 chr9 30461894 30461934 -87400693 + AT_rich Low_complexity Low_complexity 1 40 0 343 373 79 18 chr9 30461935 30462265 -87400362 + L2 LINE L2 1738 2087 -1227 180 355 76 51 chr9 30462590 30462787 -87399840 + L2 LINE L2 2641 2842 -472 224 311 14 14 chr9 30462811 30462885 -87399742 - L2 LINE L2 -47 3225 3152 1110 158 93 23 chr9 30462930 30463006 -87399621 - L1MA9 LINE L1 -70 6242 6173 246 95 0 0 chr9 30463006 30463048 -87399579 + (TG)n Simple_repeat Simple_repeat 2 43 0 1110 158 93 23 chr9 30463048 30463230 -87399397 - L1MA9 LINE L1 -139 6173 5966 1005 231 21 4 chr9 30463238 30463519 -87399108 - L1 LINE L1 -2649 3497 3212 669 149 0 0 chr9 30463536 30463657 -87398970 - L1PA15 LINE L1 -4 6161 6041 3866 18 0 0 chr9 30463659 30464104 -87398523 - L1PA3 LINE L1 0 6155 5711 4679 154 69 2 chr9 30464112 30465034 -87397593 - L1PA15 LINE L1 -133 6032 5039 312 181 114 9 chr9 30465024 30465129 -87397498 - L1 LINE L1 -2926 3220 3105 * 3143 265 49 22 chr9 30465128 30466074 -87396553 + L1M1 LINE L1 2814 3822 -3743 1793 178 0 3 chr9 30466074 30466366 -87396261 + AluSx SINE Alu 14 304 -8 3143 265 49 22 chr9 30466366 30467067 -87395560 + L1M1 LINE L1 3822 4502 -3063 230 348 42 42 chr9 30467390 30467508 -87395119 + MIR SINE MIR 12 129 -133 2015 194 34 12 chr9 30467599 30468012 -87394615 + MSTB LTR MaLR 5 426 0 229 328 0 0 chr9 30468264 30468328 -87394299 + MIR SINE MIR 82 145 -63 210 239 185 24 chr9 30468481 30468597 -87394030 - MIR SINE MIR -67 141 16 505 0 31 0 chr9 30468788 30468853 -87393774 + (TCTA)n Simple_repeat Simple_repeat 1 67 0 238 288 207 0 chr9 30469463 30469574 -87393053 + MIR SINE MIR 57 190 -72 275 335 6 37 chr9 30470260 30470421 -87392206 - L2 LINE L2 -715 2599 2444 424 330 95 6 chr9 30470547 30470726 -87391901 - MIR SINE MIR -67 195 1 191 340 126 29 chr9 30470731 30470969 -87391658 + L3b LINE CR1 1152 1412 -171 340 254 53 44 chr9 30471258 30471296 -87391331 + L1ME4a LINE L1 5323 5359 -762 2338 104 0 0 chr9 30471296 30471605 -87391022 + AluSc SINE Alu 1 309 0 340 254 53 44 chr9 30471605 30471680 -87390947 + L1ME4a LINE L1 5359 5437 -684 1330 241 0 0 chr9 30471721 30471987 -87390640 - AluJb SINE Alu -42 270 5 422 281 48 0 chr9 30472118 30472264 -87390363 - MIR SINE MIR 0 262 110 447 225 115 54 chr9 30472336 30472527 -87390100 + L1ME4a LINE L1 5586 5758 -363 6190 93 19 6 chr9 30472533 30473687 -87388940 + L1PA10 LINE L1 4998 6168 0 301 329 91 13 chr9 30473690 30473921 -87388706 + L1ME4a LINE L1 5827 6075 -46 600 284 41 6 chr9 30474961 30475130 -87387497 + MIR SINE MIR 23 197 -65 1833 126 201 6 chr9 30475301 30475659 -87386968 - MSTA LTR MaLR 0 428 1 437 286 54 49 chr9 30476080 30476136 -87386491 + MIR SINE MIR 37 91 -171 1920 133 67 25 chr9 30476136 30476496 -87386131 - THE1C LTR MaLR 0 375 1 437 286 54 49 chr9 30476496 30476663 -87385964 + MIR SINE MIR 91 261 -1 388 257 105 41 chr9 30477294 30477465 -87385162 - LTR16A LTR ERVL -12 438 257 6967 14 0 0 chr9 30477466 30478260 -87384367 + L1PA2 LINE L1 5360 6153 -2 225 0 0 0 chr9 30478274 30478299 -87384328 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 25 0 0 0 chr9 30478317 30478342 -87384285 + AT_rich Low_complexity Low_complexity 1 25 0 683 332 29 4 chr9 30478342 30478583 -87384044 - LTR16A LTR ERVL -196 254 8 26 0 0 0 chr9 30479518 30479544 -87383083 + AT_rich Low_complexity Low_complexity 1 26 0 1943 139 27 35 chr9 30479599 30479973 -87382654 - THE1C LTR MaLR -4 371 1 35 41 0 0 chr9 30481247 30481296 -87381331 + AT_rich Low_complexity Low_complexity 1 49 0 261 102 114 114 chr9 30482379 30482467 -87380160 - MER69 DNA AcHobo -14 2512 2425 239 269 148 108 chr9 30482720 30483099 -87379528 + L2 LINE L2 2920 3313 0 254 292 131 62 chr9 30483149 30483279 -87379348 - MIR3 SINE MIR -40 168 30 388 125 0 115 chr9 30483405 30483509 -87379118 - MER69 DNA AcHobo -14 2512 2421 783 286 64 35 chr9 30483517 30483621 -87379006 - MER69 DNA AcHobo -841 385 286 1700 147 22 0 chr9 30483621 30483743 -87378884 + AluSx SINE Alu 2 120 -192 353 58 19 0 chr9 30483743 30483795 -87378832 + (CA)n Simple_repeat Simple_repeat 2 54 0 1700 147 22 0 chr9 30483795 30483944 -87378683 + AluSx SINE Alu 120 279 -33 450 0 0 0 chr9 30483944 30483994 -87378633 + (TAAA)n Simple_repeat Simple_repeat 4 53 0 783 286 64 35 chr9 30483994 30484262 -87378365 - MER69 DNA AcHobo -939 287 1 503 322 28 6 chr9 30484895 30485072 -87377555 + MIR SINE MIR 23 203 -59 202 340 38 28 chr9 30485223 30485329 -87377298 + L2 LINE L2 3153 3259 -13 21 0 0 0 chr9 30485422 30485443 -87377184 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 30486367 30486388 -87376239 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr9 30486686 30486718 -87375909 + AT_rich Low_complexity Low_complexity 1 32 0 221 0 0 33 chr9 30487990 30488020 -87374607 + (TTTAA)n Simple_repeat Simple_repeat 2 30 0 238 49 24 24 chr9 30488464 30488505 -87374122 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 22 0 0 0 chr9 30489627 30489649 -87372978 + AT_rich Low_complexity Low_complexity 1 22 0 220 301 49 73 chr9 30491112 30491235 -87371392 - MER5A DNA MER1_type -1 188 69 304 293 12 0 chr9 30491958 30492040 -87370587 - MIR3 SINE MIR -14 194 112 255 235 0 15 chr9 30493176 30493244 -87369383 + MLT1L LTR MaLR 547 613 -2 1368 228 5 76 chr9 30494244 30494639 -87367988 - MLT1A2 LTR MaLR 0 374 8 2337 55 3 0 chr9 30495045 30495336 -87367291 + AluY SINE Alu 1 292 -19 503 279 81 17 chr9 30495642 30495814 -87366813 - MIR SINE MIR -44 218 36 409 224 0 0 chr9 30497339 30497424 -87365203 + MER67D LTR ERV1 1 85 -429 * 1630 210 47 49 chr9 30497407 30497942 -87364685 + MER67C LTR ERV1 12 511 -3 458 263 53 53 chr9 30497950 30498251 -87364376 - L1ME LINE L1 -613 5557 5257 1545 188 7 0 chr9 30498442 30498714 -87363913 - AluJo SINE Alu -26 286 13 288 268 12 0 chr9 30499090 30499172 -87363455 + (TA)n Simple_repeat Simple_repeat 2 84 0 395 233 80 52 chr9 30499219 30499468 -87363159 + L1MC5 LINE L1 7416 7671 -290 2279 96 36 183 chr9 30499468 30499999 -87362628 + MLT2A2 LTR ERVL 1 453 0 2805 60 3 16 chr9 30500027 30500407 -87362220 - L1PA8 LINE L1 -6 6166 5792 1168 35 7 0 chr9 30500407 30500552 -87362075 + L1PA8 LINE L1 5621 5766 -365 1030 174 32 28 chr9 30500549 30500802 -87361825 + L1MC5 LINE L1 7676 7929 -32 * 335 294 17 25 chr9 30500961 30501080 -87361547 - MLT1H LTR MaLR -6 543 426 270 126 0 200 chr9 30501570 30501665 -87360962 - MLT1-int LTR MaLR -208 1163 1088 360 288 77 12 chr9 30501742 30501912 -87360715 + MER58C DNA MER1_type 3 183 -32 235 118 0 78 chr9 30502125 30502176 -87360451 - MLT1-int LTR MaLR -502 869 823 286 243 0 14 chr9 30502746 30502820 -87359807 - MLT1-int LTR MaLR -1662 73 1 3307 175 28 58 chr9 30503628 30503877 -87358750 - MER44D DNA MER2_type -1882 705 450 2017 110 20 10 chr9 30503877 30504169 -87358458 - AluSx SINE Alu -17 295 1 3307 175 28 58 chr9 30504169 30504646 -87357981 - MER44D DNA MER2_type -2137 450 1 569 298 82 37 chr9 30504878 30505123 -87357504 - MIR SINE MIR -1 261 6 21 0 0 0 chr9 30505479 30505500 -87357127 + AT_rich Low_complexity Low_complexity 1 21 0 5301 147 15 65 chr9 30505500 30506783 -87355844 + L1MA6 LINE L1 5065 6299 -1 22 0 0 0 chr9 30506784 30506806 -87355821 + AT_rich Low_complexity Low_complexity 1 22 0 31 0 0 0 chr9 30507573 30507604 -87355023 + AT_rich Low_complexity Low_complexity 1 31 0 438 341 39 0 chr9 30507933 30508115 -87354512 + MIR SINE MIR 48 236 -26 1905 177 17 8 chr9 30508317 30508673 -87353954 + Tigger3(Golem) DNA MER2_type 2 2157 -872 2499 267 111 31 chr9 30508675 30509929 -87352698 - L1M4 LINE L1 -2023 4123 2743 1547 209 11 0 chr9 30509929 30510230 -87352397 - AluJb SINE Alu 0 306 3 2499 267 111 31 chr9 30510230 30510376 -87352251 - L1M4 LINE L1 -3403 2743 2610 408 245 89 118 chr9 30511884 30512055 -87350572 - HAL1b LINE L1 -317 1031 856 207 0 0 0 chr9 30512055 30512078 -87350549 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1912 112 4 0 chr9 30512083 30512359 -87350268 - AluSg SINE Alu -33 277 1 2268 68 14 0 chr9 30512368 30512660 -87349967 - AluY SINE Alu -15 296 1 408 245 89 118 chr9 30512660 30512844 -87349783 - HAL1b LINE L1 -504 844 671 926 160 17 52 chr9 30512873 30512921 -87349706 - L1MD1 LINE L1 -1 6241 6193 2108 119 0 3 chr9 30512921 30513214 -87349413 - AluSx SINE Alu -20 292 1 926 160 17 52 chr9 30513214 30513396 -87349231 - L1MD1 LINE L1 -49 6193 6019 431 186 153 0 chr9 30513398 30513522 -87349105 - L1MD1 LINE L1 -168 6074 5932 3333 127 41 2 chr9 30513640 30514175 -87348452 - L1PB2 LINE L1 0 6151 5596 927 139 65 46 chr9 30514185 30514401 -87348226 - L1MD2 LINE L1 -3 6356 6137 438 69 0 0 chr9 30514406 30514464 -87348163 + (TA)n Simple_repeat Simple_repeat 1 58 0 3359 226 66 14 chr9 30514506 30515443 -87347184 - L1MDa LINE L1 -4887 1653 668 2524 175 83 20 chr9 30515889 30516443 -87346184 - L1MC3 LINE L1 -6 7779 7191 237 300 10 30 chr9 30516487 30516587 -87346040 - MLT1F1 LTR MaLR -457 110 13 273 197 13 0 chr9 30516599 30516675 -87345952 - L1MC3 LINE L1 -739 7046 6970 509 152 9 27 chr9 30517118 30517230 -87345397 - L1 LINE L1 -1656 4490 4381 22 0 0 0 chr9 30517945 30517967 -87344660 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 30518236 30518257 -87344370 + AT_rich Low_complexity Low_complexity 1 21 0 256 330 19 0 chr9 30518359 30518462 -87344165 + CT-rich Low_complexity Low_complexity 2 106 0 275 363 149 40 chr9 30518513 30519304 -87343323 + L3 LINE CR1 700 1576 -1 1673 200 116 35 chr9 30520543 30521007 -87341620 + MLT1D LTR MaLR 1 502 -3 1558 226 48 97 chr9 30521305 30521937 -87340690 - LTR38B LTR ERV1 0 610 10 1934 214 88 39 chr9 30522019 30522532 -87340095 + L1MDa LINE L1 21 558 -5982 234 0 0 0 chr9 30522532 30522558 -87340069 + (CCA)n Simple_repeat Simple_repeat 1 26 0 189 0 0 0 chr9 30522604 30522625 -87340002 + (A)n Simple_repeat Simple_repeat 1 21 0 330 316 43 38 chr9 30522891 30523100 -87339527 + HAL1b LINE L1 464 673 -675 1841 58 0 0 chr9 30523148 30523372 -87339255 + AluY SINE Alu 80 303 -8 445 158 40 0 chr9 30523414 30523490 -87339137 + MER63 DNA MER1_type 672 750 -312 1791 225 59 102 chr9 30523491 30524101 -87338526 + L1MC5 LINE L1 6873 7408 -553 766 101 0 31 chr9 30524101 30524230 -87338397 - L1PA10 LINE L1 0 6168 6044 1791 225 59 102 chr9 30524230 30524675 -87337952 + L1MC5 LINE L1 7408 7871 -90 596 338 73 13 chr9 30525567 30526177 -87336450 - L1ME3A LINE L1 -235 5935 5295 19980 101 23 12 chr9 30526218 30530110 -87332517 - L1PA8 LINE L1 -22 6150 2215 6034 129 44 17 chr9 30530113 30531097 -87331530 + L1P3 LINE L1 346 1355 -5442 5438 139 10 2 chr9 30531102 30532026 -87330601 + L1P3 LINE L1 1849 2828 -3969 382 298 49 18 chr9 30532020 30532349 -87330278 - L1ME3A LINE L1 -839 5307 4969 * 340 281 77 53 chr9 30532376 30532753 -87329874 - L1ME3A LINE L1 -1353 4793 4408 1089 158 0 0 chr9 30532798 30532963 -87329664 - AluSg/x SINE Alu -17 293 129 517 309 52 14 chr9 30533125 30533416 -87329211 - L1ME3A LINE L1 -1949 4197 3896 436 329 44 51 chr9 30533434 30533750 -87328877 - L1ME3A LINE L1 -2392 3754 3441 23 0 0 0 chr9 30534014 30534037 -87328590 + AT_rich Low_complexity Low_complexity 1 23 0 965 296 43 40 chr9 30534292 30534714 -87327913 + LTR16C LTR ERVL 59 481 -10 270 333 22 0 chr9 30536242 30536332 -87326295 + MIR SINE MIR 53 144 -118 315 322 132 48 chr9 30537273 30537630 -87324997 - L2 LINE L2 -8 3305 2919 2083 66 4 0 chr9 30537838 30538111 -87324516 + L1PA3 LINE L1 5882 6155 0 299 276 78 0 chr9 30538157 30538273 -87324354 + Charlie8 DNA MER1_type 98 222 -2195 371 276 57 86 chr9 30538610 30538925 -87323702 - L2 LINE L2 -821 2493 2188 180 356 125 0 chr9 30539129 30539289 -87323338 - L2 LINE L2 -1283 2031 1852 1089 340 88 38 chr9 30539682 30540521 -87322106 - L3 LINE CR1 -206 1371 491 195 353 49 33 chr9 30540584 30540706 -87321921 - L3 LINE CR1 -1188 389 266 4558 51 0 2 chr9 30541050 30541614 -87321013 - L1PA7 LINE L1 -4 6150 5588 215 320 107 0 chr9 30542183 30542258 -87320369 - L2 LINE L2 0 3272 3190 180 0 0 0 chr9 30542716 30542736 -87319891 + (TA)n Simple_repeat Simple_repeat 2 21 0 2163 101 7 0 chr9 30542736 30543033 -87319594 - AluY SINE Alu -12 299 1 674 382 74 32 chr9 30543216 30543936 -87318691 + L2 LINE L2 2216 2965 -349 658 75 9 9 chr9 30544960 30545067 -87317560 + (TA)n Simple_repeat Simple_repeat 2 108 0 291 54 0 0 chr9 30545066 30545103 -87317524 + (CA)n Simple_repeat Simple_repeat 2 38 0 * 356 297 23 57 chr9 30545349 30545524 -87317103 - MIR SINE MIR -74 188 20 660 298 77 77 chr9 30545635 30545849 -87316778 - L2 LINE L2 -35 3278 3066 632 177 20 7 chr9 30545849 30545996 -87316631 + L1MA8 LINE L1 6139 6287 -4 660 298 77 77 chr9 30545996 30546533 -87316094 - L2 LINE L2 -247 3066 2528 181 313 133 23 chr9 30547084 30547212 -87315415 - MIR SINE MIR -64 198 57 30 59 0 0 chr9 30547602 30547653 -87314974 + AT_rich Low_complexity Low_complexity 1 51 0 385 217 63 82 chr9 30548353 30548560 -87314067 + L1MDa LINE L1 2420 2622 -3918 1470 214 158 21 chr9 30548560 30548760 -87313867 + LTR2B LTR ERV1 1 172 -318 321 26 0 0 chr9 30548760 30548798 -87313829 + (TTCTG)n Simple_repeat Simple_repeat 1 38 0 1470 214 158 21 chr9 30548798 30549028 -87313599 + LTR2B LTR ERV1 172 490 0 36893 60 21 15 chr9 30549028 30553890 -87308737 + Harlequin LTR ERV1 1 4895 -2001 14039 63 4 1 chr9 30553878 30555661 -87306966 + Harlequin LTR ERV1 5109 6896 0 * 1874 196 94 26 chr9 30555661 30556120 -87306507 + LTR2B LTR ERV1 1 490 0 1062 284 83 23 chr9 30556127 30556268 -87306359 + L1MDa LINE L1 2624 2755 -3785 5618 56 7 12 chr9 30556268 30557004 -87305623 + L1PA7 LINE L1 5420 6151 -3 1062 284 83 23 chr9 30557004 30557419 -87305208 + L1MDa LINE L1 2755 3213 -3327 * 1230 241 20 3 chr9 30557417 30557758 -87304869 - L1M4 LINE L1 -2135 4011 3665 485 257 16 11 chr9 30557767 30557950 -87304677 - L1M4 LINE L1 -2526 3620 3437 935 253 89 14 chr9 30558068 30558952 -87303675 - L1M4 LINE L1 -2892 3254 2124 881 190 60 74 chr9 30558962 30559231 -87303396 - L1MA9 LINE L1 -38 6274 6010 1298 203 61 0 chr9 30559232 30559527 -87303100 - L1M4 LINE L1 -501 5683 5371 966 239 67 21 chr9 30559523 30559896 -87302731 - L1M4 LINE L1 -2557 3589 3200 * 599 169 59 15 chr9 30559905 30560041 -87302586 - L1MA8 LINE L1 -4 6287 6146 839 115 46 0 chr9 30560041 30560171 -87302456 - L1M2 LINE L1 -662 5629 5494 956 216 69 4 chr9 30560172 30560403 -87302224 - AluJb SINE Alu -3 309 64 4191 152 41 3 chr9 30560459 30561148 -87301479 - LTR62 LTR ERVK -4 715 1 1140 185 39 0 chr9 30561151 30561410 -87301217 - L1M2 LINE L1 -778 5368 5100 3445 218 58 54 chr9 30561432 30562157 -87300470 - MER21B LTR ERV1 -19 844 113 2170 152 45 36 chr9 30562157 30562578 -87300049 - MER61B LTR ERV1 0 425 1 3445 218 58 54 chr9 30562578 30562692 -87299935 - MER21B LTR ERV1 -750 113 1 2191 175 29 18 chr9 30562692 30563143 -87299484 - L1M2 LINE L1 -1042 5104 4649 1018 181 0 36 chr9 30563129 30563322 -87299305 + L1MA9 LINE L1 5608 5793 -519 * 2676 152 57 0 chr9 30563377 30563885 -87298742 + L1MA9 LINE L1 5776 6312 0 4930 230 38 60 chr9 30563888 30565008 -87297619 + L1MD1 LINE L1 3202 4345 -1897 1593 125 34 19 chr9 30565008 30565272 -87297355 + AluY SINE Alu 39 306 -5 4930 230 38 60 chr9 30565272 30567218 -87295409 + L1MD1 LINE L1 4345 6231 -11 1923 204 114 14 chr9 30567403 30567840 -87294787 - MLT1D LTR MaLR -3 502 22 2091 78 0 17 chr9 30569193 30569488 -87293139 + AluY SINE Alu 21 310 -1 22 0 0 0 chr9 30569799 30569821 -87292806 + AT_rich Low_complexity Low_complexity 1 22 0 2233 48 41 7 chr9 30570003 30570294 -87292333 - AluY SINE Alu -10 301 1 189 147 0 0 chr9 30570836 30570870 -87291757 + (CATATA)n Simple_repeat Simple_repeat 3 36 0 211 423 0 10 chr9 30571440 30571544 -87291083 + L3 LINE CR1 1462 1564 -13 5429 123 25 1 chr9 30571795 30572910 -87289717 + L1PA16 LINE L1 5021 6157 -9 23 54 0 0 chr9 30572915 30572952 -87289675 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr9 30574260 30574288 -87288339 + AT_rich Low_complexity Low_complexity 1 28 0 887 187 126 16 chr9 30575223 30575469 -87287158 - ORSL DNA AcHobo -1 274 2 523 285 25 43 chr9 30576918 30577195 -87285432 - L1M4 LINE L1 -1992 4154 3883 254 253 55 22 chr9 30577424 30577515 -87285112 - L1MC4 LINE L1 -26 8016 7923 2709 181 19 91 chr9 30577846 30578563 -87284064 - L1MD2 LINE L1 -10 6349 5684 294 29 0 0 chr9 30578563 30578598 -87284029 + (TG)n Simple_repeat Simple_repeat 1 35 0 214 273 118 50 chr9 30578609 30578770 -87283857 + L2 LINE L2 1609 1780 -1534 246 326 76 42 chr9 30579179 30579323 -87283304 - MIR SINE MIR -65 197 49 370 292 28 101 chr9 30582285 30582463 -87280164 + MIR SINE MIR 70 234 -28 319 340 26 21 chr9 30583044 30583235 -87279392 - MLT1L LTR MaLR -10 605 414 183 80 0 0 chr9 30583318 30583343 -87279284 + (T)n Simple_repeat Simple_repeat 1 25 0 34 42 0 0 chr9 30584990 30585038 -87277589 + AT_rich Low_complexity Low_complexity 1 48 0 787 179 0 15 chr9 30585038 30585172 -87277455 - FLAM_C SINE Alu 0 133 2 21 0 0 0 chr9 30585655 30585676 -87276951 + AT_rich Low_complexity Low_complexity 1 21 0 247 333 142 7 chr9 30585773 30585914 -87276713 + MIR SINE MIR 21 180 -82 21 0 0 0 chr9 30586727 30586748 -87275879 + AT_rich Low_complexity Low_complexity 1 21 0 373 299 75 63 chr9 30586804 30587058 -87275569 + L3b LINE CR1 1109 1365 -218 250 287 73 12 chr9 30587736 30587900 -87274727 - L1MC/D LINE L1 -1907 5901 5728 967 71 49 13 chr9 30588922 30589147 -87273480 + CT-rich Low_complexity Low_complexity 1 233 0 552 240 175 39 chr9 30589868 30590176 -87272451 + Charlie2 DNA MER1_type 72 421 -2361 1368 228 11 39 chr9 30590219 30590578 -87272049 - L1MA10 LINE L1 -7 6327 5979 324 235 0 82 chr9 30590586 30590684 -87271943 - L1MC4 LINE L1 -1339 6703 6614 364 182 26 0 chr9 30590706 30590783 -87271844 - L1MA10 LINE L1 -384 5928 5850 1129 257 43 17 chr9 30590796 30591530 -87271097 + L1M1 LINE L1 3029 3791 -3774 739 149 101 120 chr9 30591602 30591810 -87270817 + MER20 DNA MER1_type 16 219 0 830 320 21 42 chr9 30592026 30592404 -87270223 + L2 LINE L2 2943 3312 -1 339 337 63 6 chr9 30593315 30593490 -87269137 + MIR SINE MIR 1 185 -77 739 87 96 0 chr9 30593592 30593707 -87268920 - L1PA10 LINE L1 -4 6164 6039 195 42 0 0 chr9 30594417 30594441 -87268186 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 29 70 0 0 chr9 30596469 30596526 -87266101 + AT_rich Low_complexity Low_complexity 1 57 0 663 303 70 34 chr9 30597483 30598371 -87264256 + L1MEc LINE L1 837 1756 -4640 5251 80 1 3 chr9 30598461 30599173 -87263454 - L1PA7 LINE L1 -1445 4701 3991 6726 64 4 19 chr9 30599174 30600632 -87261995 + L1PA7 LINE L1 4700 6146 -8 914 161 13 7 chr9 30600647 30600802 -87261825 + AluSg/x SINE Alu 153 308 -4 958 287 57 57 chr9 30600838 30601830 -87260797 + L1MEc LINE L1 1908 2877 -3338 4887 177 28 32 chr9 30601833 30603220 -87259407 - L1MA9 LINE L1 -35 6277 4903 490 197 102 7 chr9 30603341 30603478 -87259149 - L1MA9 LINE L1 -1252 4894 4745 6577 109 25 30 chr9 30603496 30604555 -87258072 - L1MA1 LINE L1 -8 6294 5243 2217 127 21 29 chr9 30604555 30604933 -87257694 - THE1C LTR MaLR 0 375 1 6577 109 25 30 chr9 30604933 30604999 -87257628 - L1MA1 LINE L1 -1059 5243 5178 897 202 299 8 chr9 30605001 30605362 -87257265 - L1MA9 LINE L1 -1386 4760 4295 629 253 64 7 chr9 30605366 30605647 -87256980 + L1MEc LINE L1 2873 3169 -3046 1452 217 18 0 chr9 30606043 30606319 -87256308 + AluJo SINE Alu 2 282 -30 1974 143 11 49 chr9 30606475 30606825 -87255802 - MER1B DNA MER1_type 0 337 1 372 338 43 0 chr9 30608665 30608804 -87253823 + MIR SINE MIR 111 255 -7 2048 108 7 0 chr9 30609794 30610073 -87252554 + AluSp SINE Alu 1 281 -32 189 0 0 0 chr9 30610073 30610094 -87252533 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 2556 188 5 68 chr9 30611969 30612560 -87250067 + MER41C LTR ERV1 1 554 0 1082 287 39 48 chr9 30612930 30612990 -87249637 - LTR16B LTR ERVL 0 464 405 1912 149 0 17 chr9 30612990 30613292 -87249335 + AluJb SINE Alu 1 297 -15 1082 287 39 48 chr9 30613292 30613694 -87248933 - LTR16B LTR ERVL -59 405 6 636 185 34 7 chr9 30614152 30614298 -87248329 - L1MA1 LINE L1 -1479 4667 4518 381 245 76 43 chr9 30614310 30614494 -87248133 - L1MC5 LINE L1 -65 7896 7707 233 385 83 15 chr9 30614678 30614883 -87247744 + MIR SINE MIR 11 229 -33 3983 203 52 41 chr9 30615251 30615806 -87246821 + L1MB7 LINE L1 4615 5162 -1022 1978 162 65 29 chr9 30615806 30616219 -87246408 + MSTA LTR MaLR 1 428 0 3983 203 52 41 chr9 30616219 30617205 -87245422 + L1MB7 LINE L1 5162 6177 -7 658 268 56 9 chr9 30617498 30617711 -87244916 - MER58A DNA MER1_type -1 223 1 1960 117 3 3 chr9 30617997 30618302 -87244325 - AluSx SINE Alu 0 305 1 22 0 0 0 chr9 30618788 30618810 -87243817 + AT_rich Low_complexity Low_complexity 1 22 0 345 343 191 22 chr9 30620404 30620732 -87241895 + L2 LINE L2 2764 3035 -278 246 105 0 0 chr9 30620732 30620770 -87241857 + (TG)n Simple_repeat Simple_repeat 1 38 0 345 343 191 22 chr9 30620770 30620912 -87241715 + L2 LINE L2 3035 3313 0 489 346 71 31 chr9 30621203 30621751 -87240876 + L2 LINE L2 2660 3232 -81 238 250 0 15 chr9 30621765 30621833 -87240794 + MIR SINE MIR 94 160 -102 42739 40 1 30 chr9 30621835 30628179 -87234448 + L1PA3 LINE L1 2 6155 0 290 304 0 0 chr9 30628180 30628272 -87234355 + MIR SINE MIR 157 248 -14 276 30 0 0 chr9 30628297 30628330 -87234297 + (CAT)n Simple_repeat Simple_repeat 2 34 0 730 276 18 9 chr9 30628420 30628637 -87233990 - MLT1G LTR MaLR -6 584 366 273 29 0 0 chr9 30629582 30629616 -87233011 + (CA)n Simple_repeat Simple_repeat 1 34 0 356 281 154 23 chr9 30629643 30629864 -87232763 + L1ME4a LINE L1 5831 6080 -41 5930 153 12 2 chr9 30629882 30631447 -87231180 - L1PB1 LINE L1 -7 6144 4564 7825 163 11 4 chr9 30631454 30632133 -87230494 - L1PA13 LINE L1 0 6163 5490 1992 140 10 0 chr9 30632133 30632425 -87230202 - AluSx SINE Alu -17 295 1 7825 163 11 4 chr9 30632425 30633978 -87228649 - L1PA13 LINE L1 -673 5490 3908 857 321 90 24 chr9 30633996 30634420 -87228207 + L1PA13 LINE L1 772 1258 -5529 5275 191 17 12 chr9 30634423 30636058 -87226569 + L1PA13 LINE L1 1396 3065 -3732 6571 124 41 49 chr9 30637168 30638405 -87224222 - Tigger3b DNA MER2_type -4 1227 1 21 57 0 0 chr9 30638466 30638501 -87224126 + AT_rich Low_complexity Low_complexity 1 35 0 318 314 13 6 chr9 30638518 30638539 -87224088 - L1MA10 LINE L1 0 6334 6314 1597 225 40 14 chr9 30638539 30638962 -87223665 - L1ME1 LINE L1 -12 6154 5721 863 293 61 32 chr9 30639058 30639532 -87223095 - L1MCc LINE L1 -5912 511 24 1050 294 79 45 chr9 30639593 30640688 -87221939 - L1MCc LINE L1 -4824 2117 1061 414 0 0 0 chr9 30640688 30640734 -87221893 + (TG)n Simple_repeat Simple_repeat 2 47 0 1595 132 4 23 chr9 30640735 30640993 -87221634 - AluSq SINE Alu -16 297 45 1050 294 79 45 chr9 30640993 30641169 -87221458 - L1MCc LINE L1 -5879 1062 802 10538 228 21 31 chr9 30641178 30644723 -87217904 - L1PA12 LINE L1 -2984 4600 9 252 308 0 8 chr9 30645278 30645398 -87217229 + L1M4 LINE L1 2593 2711 -3435 563 286 108 9 chr9 30647654 30647867 -87214760 - MIR SINE MIR 0 262 29 212 271 0 0 chr9 30647946 30648005 -87214622 + (TAA)n Simple_repeat Simple_repeat 2 60 0 1345 237 30 55 chr9 30648062 30648459 -87214168 + MLT1B LTR MaLR 1 387 -3 254 369 112 17 chr9 30648459 30648638 -87213989 - MIR SINE MIR -63 199 4 21 36 0 0 chr9 30649099 30649127 -87213500 + AT_rich Low_complexity Low_complexity 1 28 0 3365 219 47 40 chr9 30649398 30649626 -87213001 - L1MB8 LINE L1 0 6178 5953 2045 105 0 51 chr9 30649626 30649939 -87212688 - AluSx SINE Alu -12 300 4 3365 219 47 40 chr9 30649939 30650629 -87211998 - L1MB8 LINE L1 -225 5953 5254 1957 240 53 7 chr9 30650639 30651189 -87211438 - L1MB8 LINE L1 -1833 4313 3739 320 209 26 52 chr9 30651511 30651626 -87211001 + CT-rich Low_complexity Low_complexity 6 117 0 288 53 0 0 chr9 30651637 30651675 -87210952 + (TG)n Simple_repeat Simple_repeat 1 38 0 5423 46 1 4 chr9 30652563 30653241 -87209386 - L1PA7 LINE L1 -2 6152 5477 2597 96 96 5 chr9 30653519 30653882 -87208745 + MLT2A1 LTR ERVL 1 406 -38 621 0 0 0 chr9 30653882 30653951 -87208676 + (TCTA)n Simple_repeat Simple_repeat 4 72 0 2597 96 96 5 chr9 30653951 30653994 -87208633 + MLT2A1 LTR ERVL 406 444 0 193 289 58 29 chr9 30656850 30656954 -87205673 - L2 LINE L2 -265 3048 2942 294 233 0 41 chr9 30657085 30657158 -87205469 + L1M4 LINE L1 2677 2746 -3400 1346 224 21 25 chr9 30657163 30657489 -87205138 - MLT1A1 LTR MaLR -40 325 1 2075 259 83 31 chr9 30657606 30658160 -87204467 - L1ME1 LINE L1 -1 6976 6452 1917 170 3 26 chr9 30658160 30658502 -87204125 - MER1B DNA MER1_type -3 334 1 2075 259 83 31 chr9 30658502 30659572 -87203055 - L1ME1 LINE L1 -525 6452 5127 1833 169 23 0 chr9 30660448 30660791 -87201836 - L1MB1 LINE L1 0 6168 5818 463 127 0 0 chr9 30660792 30660863 -87201764 + L1MB1 LINE L1 5743 5813 -355 683 257 69 31 chr9 30660898 30661159 -87201468 - L1ME1 LINE L1 -4788 2171 1901 312 283 180 35 chr9 30661497 30661752 -87200875 - L1ME1 LINE L1 -6309 546 2 3289 239 60 34 chr9 30661934 30663464 -87199163 + L1MD2 LINE L1 4787 6349 -10 21 36 0 0 chr9 30663496 30663524 -87199103 + AT_rich Low_complexity Low_complexity 1 28 0 388 314 73 47 chr9 30663699 30663983 -87198644 - L1ME4a LINE L1 -248 5873 5575 2003 120 3 3 chr9 30663983 30664274 -87198353 + AluSx SINE Alu 1 291 -21 388 314 73 47 chr9 30664274 30664371 -87198256 - L1ME4a LINE L1 -546 5575 5482 26 0 0 0 chr9 30664448 30664474 -87198153 + AT_rich Low_complexity Low_complexity 1 26 0 5284 76 1 37 chr9 30665478 30666237 -87196390 + L1PA8 LINE L1 5437 6168 -4 200 206 0 0 chr9 30666516 30666550 -87196077 + polypurine Low_complexity Low_complexity 1 34 0 21 0 0 0 chr9 30667210 30667231 -87195396 + AT_rich Low_complexity Low_complexity 1 21 0 295 340 11 11 chr9 30667436 30667530 -87195097 + L2 LINE L2 3169 3262 -10 238 311 75 19 chr9 30667620 30667726 -87194901 - L3 LINE CR1 -82 1495 1384 340 313 52 0 chr9 30668017 30668132 -87194495 - MIR SINE MIR 0 262 142 33 73 0 0 chr9 30668882 30668950 -87193677 + AT_rich Low_complexity Low_complexity 1 68 0 24 0 0 0 chr9 30669208 30669232 -87193395 + AT_rich Low_complexity Low_complexity 1 24 0 30 45 0 0 chr9 30669291 30669335 -87193292 + AT_rich Low_complexity Low_complexity 1 44 0 468 333 135 0 chr9 30669608 30669830 -87192797 - MIR SINE MIR 0 262 11 324 306 9 9 chr9 30669863 30669974 -87192653 - MIR SINE MIR -30 232 122 198 316 103 43 chr9 30671059 30671176 -87191451 + MIR SINE MIR 68 191 -71 187 261 22 0 chr9 30671367 30671413 -87191214 - L2 LINE L2 -1 3271 3225 28 61 0 0 chr9 30671541 30671590 -87191037 + AT_rich Low_complexity Low_complexity 1 49 0 380 306 42 60 chr9 30671749 30671965 -87190662 + L2 LINE L2 3102 3313 0 278 330 32 0 chr9 30672029 30672123 -87190504 + L2 LINE L2 3201 3297 -16 23 54 0 0 chr9 30672729 30672766 -87189861 + AT_rich Low_complexity Low_complexity 1 37 0 282 194 133 10 chr9 30673489 30673587 -87189040 - MER69 DNA AcHobo -83 2443 2334 1356 162 35 69 chr9 30673668 30674014 -87188613 + L1MA7 LINE L1 5957 6290 -1 3859 141 47 36 chr9 30674645 30675348 -87187279 - MER50 LTR ERV1 -23 711 1 2080 61 87 0 chr9 30676692 30676969 -87185658 - AluY SINE Alu -10 301 1 281 180 30 40 chr9 30678018 30678118 -87184509 + (TATATG)n Simple_repeat Simple_repeat 4 102 0 225 103 51 0 chr9 30678167 30678206 -87184421 + L1MC4 LINE L1 6663 6703 -1339 * 270 133 0 0 chr9 30678178 30678223 -87184404 - L1MC4 LINE L1 -1339 6703 6659 23 68 0 0 chr9 30678427 30678471 -87184156 + AT_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr9 30678747 30678769 -87183858 + AT_rich Low_complexity Low_complexity 1 22 0 301 356 64 4 chr9 30678972 30679239 -87183388 + L1MCc LINE L1 1253 1535 -4888 582 311 60 34 chr9 30679443 30679980 -87182647 + L1MCc LINE L1 1996 2546 -4576 520 288 88 15 chr9 30680074 30680279 -87182348 + L1MEc LINE L1 45 264 -6132 308 298 11 0 chr9 30680549 30680643 -87181984 + ERVL-B1 LTR ERVL 316 410 -5354 2529 99 14 14 chr9 30680643 30681007 -87181620 - THE1B LTR MaLR 0 364 1 8670 137 48 45 chr9 30681007 30682581 -87180046 - THE1B-int LTR MaLR 0 1580 1 2423 117 19 14 chr9 30682581 30682941 -87179686 - THE1B LTR MaLR 0 364 3 3302 212 31 18 chr9 30682941 30683620 -87179007 + ERVL-B1 LTR ERVL 404 1091 -4673 * 5163 182 16 35 chr9 30683612 30683757 -87178870 + ERVL-B1 LTR ERVL 4729 4875 -889 2344 92 0 0 chr9 30683757 30684060 -87178567 - AluY SINE Alu -8 303 1 5163 182 16 35 chr9 30684060 30684956 -87177671 + ERVL-B1 LTR ERVL 4875 5750 -14 987 223 40 92 chr9 30684963 30685335 -87177292 + MLT2B1 LTR ERVL 1 391 -23 333 0 0 0 chr9 30685335 30685372 -87177255 + (CA)n Simple_repeat Simple_repeat 2 38 0 252 0 0 0 chr9 30685371 30685399 -87177228 + (GA)n Simple_repeat Simple_repeat 2 29 0 * 987 223 40 92 chr9 30685372 30685454 -87177173 + MLT2B1 LTR ERVL 391 412 -2 1001 217 37 94 chr9 30685454 30685804 -87176823 + L1MB7 LINE L1 5739 6068 -116 569 214 8 8 chr9 30685808 30685925 -87176702 - LTR28 LTR ERV1 -4 1016 900 774 211 94 79 chr9 30685965 30686642 -87175985 - LTR1 LTR ERV1 -39 981 1 515 204 0 0 chr9 30686644 30686757 -87175870 + L1MB8 LINE L1 6065 6177 -1 859 259 56 26 chr9 30686802 30687142 -87175485 + L1MEc LINE L1 1701 2050 -4346 1322 252 86 49 chr9 30687149 30687222 -87175405 + Charlie5 DNA MER1_type 1 63 -662 2362 119 23 0 chr9 30687222 30687575 -87175052 + L1PA14 LINE L1 5799 6159 -2 1322 252 86 49 chr9 30687575 30688108 -87174519 + Charlie5 DNA MER1_type 63 622 -103 2643 237 53 29 chr9 30688115 30689039 -87173588 + Charlie5 DNA MER1_type 1101 2046 -566 2457 126 14 12 chr9 30689054 30689296 -87173331 - L1MA2 LINE L1 0 6304 6059 1958 135 7 0 chr9 30689296 30689592 -87173035 - AluSg SINE Alu -12 298 1 2457 126 14 12 chr9 30689592 30689769 -87172858 - L1MA2 LINE L1 -245 6059 5884 289 130 22 0 chr9 30689769 30689815 -87172812 - Alu SINE Alu -259 49 3 1025 225 36 41 chr9 30689816 30690203 -87172424 + Charlie5 DNA MER1_type 2239 2623 0 578 271 65 31 chr9 30690440 30690669 -87171958 + L1MEc LINE L1 110 346 -6050 538 276 79 20 chr9 30690677 30690880 -87171747 - L1ME LINE L1 -655 5509 5295 239 200 18 0 chr9 30690883 30690938 -87171689 + (TA)n Simple_repeat Simple_repeat 1 56 0 3809 238 78 25 chr9 30690938 30691190 -87171437 - L1ME LINE L1 -874 5272 5035 2401 243 14 4 chr9 30691190 30691746 -87170881 - MER68 LTR ERV1 0 562 1 3809 238 78 25 chr9 30691746 30692887 -87169740 - L1ME LINE L1 -1111 5035 3805 242 344 42 0 chr9 30693258 30693354 -87169273 + L2 LINE L2 3214 3313 0 680 258 144 11 chr9 30694316 30694580 -87168047 + MER46C DNA MER2_type 14 312 -26 2010 128 0 0 chr9 30694582 30694908 -87167719 - AluSx SINE Alu 0 326 1 283 273 99 33 chr9 30695009 30695130 -87167497 - MIR SINE MIR -78 184 56 303 28 0 0 chr9 30696381 30696417 -87166210 + (TA)n Simple_repeat Simple_repeat 2 37 0 725 183 8 0 chr9 30696417 30696548 -87166079 - FLAM_A SINE Alu -3 139 8 448 297 167 45 chr9 30696550 30697007 -87165620 + L2 LINE L2 1943 2343 -971 402 114 14 0 chr9 30697007 30697077 -87165550 - L1MA8 LINE L1 -4 6287 6217 2006 80 0 0 chr9 30697078 30697329 -87165298 + AluSx SINE Alu 1 251 -61 448 297 167 45 chr9 30697329 30697360 -87165267 + L2 LINE L2 2342 2493 -821 1324 176 30 20 chr9 30697397 30697698 -87164929 - L1MB5 LINE L1 -3 6669 6366 2173 233 35 18 chr9 30697718 30698400 -87164227 - L1MB5 LINE L1 -797 5847 5154 4604 275 77 31 chr9 30698405 30702018 -87160609 - L1MB5 LINE L1 -1639 5005 1085 1975 141 13 0 chr9 30702018 30702316 -87160311 - AluY SINE Alu -9 302 1 4604 275 77 31 chr9 30702316 30703404 -87159223 - L1MB5 LINE L1 -5559 1085 48 263 413 62 23 chr9 30703488 30703747 -87158880 + L2 LINE L2 2566 2834 -480 278 240 0 0 chr9 30703950 30704000 -87158627 + Tigger3(Golem) DNA MER2_type 19 68 -2961 3623 166 34 7 chr9 30704005 30704686 -87157941 - HSMAR2 DNA Mariner 0 1302 604 1419 237 37 5 chr9 30704686 30704952 -87157675 + L1PA15 LINE L1 2180 2463 -3683 303 28 0 0 chr9 30704952 30704988 -87157639 + (TG)n Simple_repeat Simple_repeat 1 36 0 1419 237 37 5 chr9 30704988 30705097 -87157530 + L1PA15 LINE L1 2463 2567 -3579 2055 147 3 12 chr9 30705106 30705446 -87157181 - MER61B LTR ERV1 -29 396 60 10043 219 16 7 chr9 30705469 30708445 -87154182 + L1PA15 LINE L1 2837 5833 -332 24 0 0 0 chr9 30708468 30708492 -87154135 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr9 30708539 30708563 -87154064 + AT_rich Low_complexity Low_complexity 1 24 0 217 349 68 15 chr9 30708607 30708739 -87153888 + MIR SINE MIR 74 212 -50 275 320 117 46 chr9 30710436 30710717 -87151910 + L2 LINE L2 1813 2113 -1201 206 128 26 0 chr9 30710851 30710890 -87151737 + (TG)n Simple_repeat Simple_repeat 1 40 0 232 296 184 0 chr9 30710900 30710998 -87151629 + L2 LINE L2 2261 2376 -938 263 309 53 126 chr9 30711243 30711505 -87151122 - L2 LINE L2 -551 2763 2521 598 130 0 17 chr9 30712870 30712985 -87149642 + (TTCC)n Simple_repeat Simple_repeat 4 116 0 24 32 0 0 chr9 30713152 30713183 -87149444 + AT_rich Low_complexity Low_complexity 1 31 0 183 314 76 67 chr9 30713464 30713569 -87149058 + MER5B DNA MER1_type 23 128 -50 * 222 379 43 0 chr9 30713477 30713593 -87149034 - MER5A DNA MER1_type -35 154 34 226 73 49 0 chr9 30714097 30714138 -87148489 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 4761 169 68 20 chr9 30714267 30715275 -87147352 - L1MC2 LINE L1 -9 6335 5279 2754 150 9 0 chr9 30716633 30717092 -87145535 - L1PA16 LINE L1 0 6166 5704 1191 177 4 1 chr9 30717094 30717327 -87145300 + L1PA16 LINE L1 5459 5695 -473 1253 283 92 40 chr9 30717352 30718121 -87144506 + L2 LINE L2 2367 3168 -145 4151 86 0 4 chr9 30718536 30719092 -87143535 + MER41A LTR ERV1 1 554 0 21384 151 80 53 chr9 30719176 30720463 -87142164 + MER41A-int LTR ERV1 1 1251 -4695 1990 131 3 10 chr9 30720463 30720761 -87141866 - AluSx SINE Alu -15 297 2 21384 151 80 53 chr9 30720761 30720867 -87141760 + MER41A-int LTR ERV1 1251 1353 -4593 1868 137 29 35 chr9 30720867 30721181 -87141446 + AluSx SINE Alu 1 312 0 21384 151 80 53 chr9 30721181 30725487 -87137140 + MER41A-int LTR ERV1 1353 5942 -4 4080 89 4 0 chr9 30725489 30726041 -87136586 + MER41A LTR ERV1 1 554 0 27 49 0 0 chr9 30726408 30726449 -87136178 + AT_rich Low_complexity Low_complexity 1 41 0 1900 41 0 0 chr9 30726572 30726793 -87135834 + AluY SINE Alu 86 306 -5 1110 209 171 84 chr9 30727754 30728182 -87134445 + MLT1D LTR MaLR 1 467 0 611 172 7 86 chr9 30729531 30729682 -87132945 + MER97c DNA MER1_type? 40 178 -912 531 263 39 52 chr9 30729807 30730039 -87132588 - L1ME2 LINE L1 -1 6163 5935 34 55 0 0 chr9 30730281 30730336 -87132291 + AT_rich Low_complexity Low_complexity 1 55 0 1232 255 107 41 chr9 30731156 30731195 -87131432 - MLT2B1 LTR ERVL 0 520 485 559 48 12 12 chr9 30731195 30731279 -87131348 + (TAGA)n Simple_repeat Simple_repeat 3 86 0 1232 255 107 41 chr9 30731279 30731725 -87130902 - MLT2B1 LTR ERVL -35 485 3 288 260 55 0 chr9 30731733 30731806 -87130821 + MER103 DNA DNA 28 104 -62 1974 123 0 4 chr9 30732269 30732545 -87130082 - AluSx SINE Alu -35 277 3 1603 161 122 6 chr9 30733120 30733456 -87129171 + THE1C LTR MaLR 1 375 0 8840 143 11 54 chr9 30733458 30735106 -87127521 + THE1C-int LTR MaLR 3 1580 0 1765 191 38 16 chr9 30735106 30735473 -87127154 + THE1C LTR MaLR 1 375 0 292 299 80 58 chr9 30735853 30735990 -87126637 - MIR3 SINE MIR -2 206 67 342 184 40 40 chr9 30736723 30736799 -87125828 - MIR SINE MIR -106 156 81 23 33 0 0 chr9 30736992 30737022 -87125605 + AT_rich Low_complexity Low_complexity 1 30 0 462 273 61 71 chr9 30737030 30737422 -87125205 + L1ME4a LINE L1 5638 6025 -96 1913 126 34 7 chr9 30737878 30738171 -87124456 - AluSx SINE Alu -11 301 1 21 36 0 0 chr9 30739262 30739290 -87123337 + AT_rich Low_complexity Low_complexity 1 28 0 320 369 37 5 chr9 30740543 30740730 -87121897 + MIR SINE MIR 64 256 -6 467 321 42 7 chr9 30740884 30741079 -87121548 - MIR3 SINE MIR -1 207 1 2149 202 92 25 chr9 30742559 30743083 -87119544 + MER89 LTR ERV1 1 559 0 1906 127 69 0 chr9 30743831 30744122 -87118505 + AluSx SINE Alu 1 311 -1 267 309 139 46 chr9 30745341 30745507 -87117120 - MIR3 SINE MIR -64 144 2 275 329 12 0 chr9 30745616 30745698 -87116929 - L2 LINE L2 0 3313 3231 28 71 0 0 chr9 30747493 30747549 -87115078 + AT_rich Low_complexity Low_complexity 1 56 0 1205 124 46 0 chr9 30747820 30748014 -87114613 + L1MA2 LINE L1 6102 6304 0 21 36 0 0 chr9 30748149 30748177 -87114450 + AT_rich Low_complexity Low_complexity 1 28 0 686 253 3 140 chr9 30748380 30748672 -87113955 + L1MDa LINE L1 17 268 -6272 739 247 12 0 chr9 30748674 30748836 -87113791 + L1MC1 LINE L1 100 263 -6279 1939 259 54 39 chr9 30748870 30749310 -87113317 + L1MC1 LINE L1 347 802 -5740 180 0 0 0 chr9 30749310 30749330 -87113297 + (CA)n Simple_repeat Simple_repeat 1 20 0 1939 259 54 39 chr9 30749330 30749538 -87113089 + L1MC1 LINE L1 802 1005 -5537 1101 227 99 16 chr9 30749536 30749919 -87112708 + L1MC1 LINE L1 1682 2096 -4550 * 304 209 0 12 chr9 30749948 30750034 -87112593 + L1MC1 LINE L1 2231 2315 -4331 2041 237 53 33 chr9 30750088 30750939 -87111688 + L1MC1 LINE L1 2537 3418 -3226 1209 235 98 21 chr9 30750950 30751152 -87111475 - MLT1A2 LTR MaLR -9 365 125 1337 153 133 55 chr9 30751152 30751498 -87111129 - THE1C LTR MaLR -2 373 1 1209 235 98 21 chr9 30751498 30751631 -87110996 - MLT1A2 LTR MaLR -249 125 4 939 245 203 33 chr9 30751632 30751837 -87110790 + L1MC1 LINE L1 3419 3588 -3056 592 197 14 7 chr9 30751837 30751979 -87110648 + L1MA8 LINE L1 6143 6285 -6 939 245 203 33 chr9 30751979 30752345 -87110282 + L1MC1 LINE L1 3588 4087 -2557 * 1343 209 50 0 chr9 30752343 30752645 -87109982 + L1MC1 LINE L1 5871 6187 -495 989 224 12 8 chr9 30752645 30752904 -87109723 + L1MA9 LINE L1 6015 6274 -38 * 3231 261 103 27 chr9 30752899 30754651 -87107976 + L1MD2 LINE L1 2489 4402 -2138 12523 104 14 0 chr9 30754651 30757270 -87105357 + L1PA7 LINE L1 3514 6149 -5 3231 261 103 27 chr9 30757270 30757346 -87105281 + L1MD2 LINE L1 4402 4471 -2069 1529 193 27 7 chr9 30757348 30757648 -87104979 + L1MC1 LINE L1 6406 6711 -120 2067 254 58 10 chr9 30757689 30757709 -87104918 + L1MD2 LINE L1 5633 5651 -1102 2893 185 39 7 chr9 30757709 30758319 -87104308 + L1PB4 LINE L1 5526 6155 -1 2067 254 58 10 chr9 30758319 30758953 -87103674 + L1MD2 LINE L1 5651 6558 -195 279 114 0 0 chr9 30758953 30758997 -87103630 + (CA)n Simple_repeat Simple_repeat 1 44 0 2067 254 58 10 chr9 30758997 30759188 -87103439 + L1MD2 LINE L1 6558 6739 -14 246 357 31 10 chr9 30760166 30760264 -87102363 - L2 LINE L2 -5 3267 3168 1931 188 59 10 chr9 30760278 30760683 -87101944 + MSTB1 LTR MaLR 5 429 -3 206 62 31 0 chr9 30761177 30761209 -87101418 + (TA)n Simple_repeat Simple_repeat 2 34 0 207 139 0 0 chr9 30761324 30761360 -87101267 + (CAATA)n Simple_repeat Simple_repeat 2 37 0 21 36 0 0 chr9 30761896 30761924 -87100703 + AT_rich Low_complexity Low_complexity 1 28 0 1456 174 85 26 chr9 30763702 30764042 -87098585 + MER46B DNA MER2_type 1 235 -1 199 271 254 51 chr9 30765345 30765463 -87097164 + MIR3 SINE MIR 60 201 -7 2312 240 96 50 chr9 30765713 30766223 -87096404 + L1ME1 LINE L1 4645 5130 -1036 2059 129 13 0 chr9 30766223 30766526 -87096101 + AluSg SINE Alu 1 307 -3 2312 240 96 50 chr9 30766526 30767475 -87095152 + L1ME1 LINE L1 5130 6162 -4 25 75 0 0 chr9 30767534 30767587 -87095040 + AT_rich Low_complexity Low_complexity 1 53 0 328 304 97 51 chr9 30769178 30769415 -87093212 + HAL1 LINE L1 803 1050 -1457 21 0 0 0 chr9 30769433 30769454 -87093173 + AT_rich Low_complexity Low_complexity 1 21 0 2020 227 38 22 chr9 30769732 30770229 -87092398 + MLT1D LTR MaLR 1 505 0 267 381 8 8 chr9 30770394 30770512 -87092115 - L2 LINE L2 -17 3296 3179 196 256 0 0 chr9 30773907 30773946 -87088681 + MIR SINE MIR 146 184 -78 1744 154 18 0 chr9 30773975 30774138 -87088489 - AluJo SINE Alu -27 285 113 183 100 0 0 chr9 30774138 30774168 -87088459 + (TG)n Simple_repeat Simple_repeat 1 30 0 1744 154 18 0 chr9 30774168 30774284 -87088343 - AluJo SINE Alu -199 113 1 26 50 0 0 chr9 30774383 30774423 -87088204 + AT_rich Low_complexity Low_complexity 1 40 0 232 278 93 9 chr9 30775532 30775640 -87086987 - MER112 DNA MER1_type -78 182 66 500 248 78 14 chr9 30776010 30776151 -87086476 + L1MA6 LINE L1 469 618 -6871 * 5959 208 46 4 chr9 30776146 30777553 -87085074 - L1MA4 LINE L1 -1832 4314 2848 4874 183 35 20 chr9 30777551 30779525 -87083102 + L1MA4 LINE L1 4298 6299 -1 * 909 298 25 63 chr9 30779551 30779994 -87082633 + L1MA6 LINE L1 617 1042 -6447 11042 199 69 31 chr9 30780058 30785549 -87077078 + L1MA6 LINE L1 2008 7718 -1 204 325 52 93 chr9 30785868 30785908 -87076719 - MIR SINE MIR -28 234 194 2185 92 17 17 chr9 30785908 30786202 -87076425 + AluSg SINE Alu 3 296 -14 204 325 52 93 chr9 30786202 30786355 -87076272 - MIR SINE MIR -68 194 49 592 317 102 40 chr9 30786777 30787102 -87075525 + LTR16A LTR ERVL 16 360 -90 1843 215 67 33 chr9 30787484 30787964 -87074663 + MLT1D LTR MaLR 1 496 -9 243 0 0 0 chr9 30789004 30789031 -87073596 + (CA)n Simple_repeat Simple_repeat 2 28 0 21 71 0 0 chr9 30789466 30789508 -87073119 + AT_rich Low_complexity Low_complexity 1 42 0 1321 246 78 10 chr9 30791588 30791987 -87070640 + L1MC4a LINE L1 7087 7512 -296 * 5673 103 8 17 chr9 30791977 30792504 -87070123 + L1PA13 LINE L1 5302 5821 -342 2285 110 0 0 chr9 30792504 30792803 -87069824 + AluY SINE Alu 3 301 -10 5673 103 8 17 chr9 30792803 30793144 -87069483 + L1PA13 LINE L1 5821 6163 0 1258 213 0 27 chr9 30793175 30793438 -87069189 + AluJb SINE Alu 1 256 -56 372 133 0 0 chr9 30793458 30793518 -87069109 + (GGAA)n Simple_repeat Simple_repeat 3 62 0 2217 111 0 0 chr9 30793748 30794046 -87068581 + AluY SINE Alu 1 298 -13 317 0 0 65 chr9 30794199 30794245 -87068382 + (A)n Simple_repeat Simple_repeat 1 43 0 1944 60 38 19 chr9 30794981 30795248 -87067379 + HERVK14 LTR ERVK 5488 5759 -186 274 249 0 0 chr9 30795248 30795310 -87067317 + MER41C LTR ERV1 1 53 -501 682 94 94 34 chr9 30795310 30795427 -87067200 + HERVK14 LTR ERVK 5822 5945 0 1825 99 32 179 chr9 30795430 30795833 -87066794 + LTR14B LTR ERVK 1 608 0 2583 181 121 42 chr9 30795834 30796093 -87066534 - L1MA7 LINE L1 -257 6034 5797 1960 133 7 23 chr9 30796093 30796402 -87066225 - AluSp SINE Alu -9 304 1 2583 181 121 42 chr9 30796402 30797320 -87065307 - L1MA7 LINE L1 -494 5797 4761 258 81 0 0 chr9 30797445 30797482 -87065145 + (TC)n Simple_repeat Simple_repeat 2 38 0 * 348 188 0 0 chr9 30797481 30797550 -87065077 + (TATATG)n Simple_repeat Simple_repeat 4 72 0 647 191 13 19 chr9 30797558 30797715 -87064912 - L1M3 LINE L1 -709 5474 5319 2841 0 0 3 chr9 30799512 30799820 -87062807 - AluYa5 SINE Alu -4 307 1 469 272 24 8 chr9 30800801 30800926 -87061701 - MIR3 SINE MIR -7 201 75 332 366 28 0 chr9 30801176 30801318 -87061309 - MER115 DNA AcHobo -413 280 135 424 299 22 87 chr9 30801500 30801811 -87060816 - HAL1 LINE L1 -1674 833 543 351 60 0 0 chr9 30801812 30801862 -87060765 + (T)n Simple_repeat Simple_repeat 1 50 0 270 237 71 160 chr9 30801950 30802015 -87060612 - HAL1 LINE L1 -2086 421 352 2217 111 0 0 chr9 30802015 30802313 -87060314 - AluY SINE Alu -13 298 1 270 237 71 160 chr9 30802313 30802585 -87060042 - HAL1 LINE L1 -2155 352 114 182 37 37 0 chr9 30803020 30803047 -87059580 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 2006 172 25 0 chr9 30803247 30803602 -87059025 + THE1B LTR MaLR 1 364 0 9676 121 34 44 chr9 30803602 30805180 -87057447 + THE1B-int LTR MaLR 1 1563 -17 1751 147 37 0 chr9 30805180 30805453 -87057174 + THE1B LTR MaLR 82 364 0 811 228 129 0 chr9 30805492 30805685 -87056942 + MER20 DNA MER1_type 1 218 -1 5460 194 114 10 chr9 30805689 30807052 -87055575 - L1MCa LINE L1 -4805 1621 20 357 343 14 7 chr9 30807729 30807872 -87054755 - MER117 DNA MER1_type -42 155 12 932 242 84 49 chr9 30810301 30810516 -87052111 + L1M4 LINE L1 3879 4085 -2061 1436 89 80 25 chr9 30810516 30810753 -87051874 + L1PA8 LINE L1 5912 6161 -11 932 242 84 49 chr9 30810753 30810967 -87051660 + L1M4 LINE L1 4085 4323 -1823 740 243 46 23 chr9 30810972 30811235 -87051392 + L1M4 LINE L1 4670 4938 -1208 789 248 74 19 chr9 30812010 30812373 -87050254 + L1M4 LINE L1 4967 5349 -797 21 36 0 0 chr9 30812558 30812586 -87050041 + AT_rich Low_complexity Low_complexity 1 28 0 730 225 141 0 chr9 30812784 30812975 -87049652 + MSTD-int LTR MaLR 1504 1721 -14 433 215 32 0 chr9 30812986 30813079 -87049548 + MSTD LTR MaLR 1 96 -300 314 335 61 12 chr9 30813766 30813930 -87048697 + MER5B DNA MER1_type 2 173 -5 448 207 55 213 chr9 30813993 30814322 -87048305 + L1MD1 LINE L1 3 279 -6261 * 1762 262 46 17 chr9 30814310 30815032 -87047595 + L1MD1 LINE L1 2904 3646 -2894 3455 178 12 14 chr9 30815036 30815684 -87046943 - MER39B LTR ERV1 -6 647 1 1554 268 132 11 chr9 30815685 30816502 -87046125 + L1MD1 LINE L1 3645 4560 -1980 * 3105 231 106 24 chr9 30816488 30818103 -87044524 + L1MD1 LINE L1 4881 6626 -10 207 0 0 0 chr9 30818233 30818256 -87044371 + (A)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chr9 30818664 30818685 -87043942 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr9 30819419 30819453 -87043174 + AT_rich Low_complexity Low_complexity 1 34 0 407 294 29 15 chr9 30820269 30820405 -87042222 - MIR SINE MIR -39 223 86 302 401 18 15 chr9 30821794 30822068 -87040559 - L1MC4 LINE L1 -612 7430 7156 389 222 61 10 chr9 30822335 30822434 -87040193 + MSTD LTR MaLR 1 104 -261 557 226 34 79 chr9 30822499 30822780 -87039847 + MSTD LTR MaLR 118 396 0 259 317 100 0 chr9 30822811 30822931 -87039696 - L1MC4 LINE L1 -1165 6877 6746 854 256 77 61 chr9 30823214 30823589 -87039038 + MER97c DNA MER1_type? 1 381 -709 503 62 0 0 chr9 30823603 30823667 -87038960 + THE1C LTR MaLR 4 67 -308 228 247 253 11 chr9 30823668 30823850 -87038777 + MER97c DNA MER1_type? 838 1063 -27 24 32 0 0 chr9 30824046 30824077 -87038550 + AT_rich Low_complexity Low_complexity 1 31 0 647 319 74 35 chr9 30824078 30824483 -87038144 + L1M3c LINE L1 1 421 -5720 362 177 13 0 chr9 30824698 30824777 -87037850 + L1MB1 LINE L1 4626 4705 -1441 2020 217 132 17 chr9 30824824 30825461 -87037166 - MER50 LTR ERV1 -17 717 8 3057 187 77 1 chr9 30825465 30826129 -87036498 + L1MB1 LINE L1 5459 6172 -17 288 0 0 0 chr9 30826267 30826299 -87036328 + (CA)n Simple_repeat Simple_repeat 2 33 0 538 226 155 2 chr9 30827893 30828101 -87034526 - L1 LINE L1 -1315 4831 4597 1609 66 39 18 chr9 30828207 30828463 -87034164 - HERVK14 LTR ERVK -577 5368 5038 362 41 0 0 chr9 30828463 30828512 -87034115 - HERV17 LTR ERV1 -8145 481 433 * 1089 55 28 7 chr9 30828511 30828656 -87033971 - HERV17 LTR ERV1 -3073 5553 5406 * 9885 65 28 11 chr9 30828636 30829939 -87032688 - HERV17 LTR ERV1 -4872 3754 2430 8432 75 16 7 chr9 30829931 30831064 -87031563 - HERV17 LTR ERV1 -6619 2007 865 * 5113 91 46 8 chr9 30831124 30831880 -87030747 - HERVK14 LTR ERVK -5160 785 1 1992 89 73 104 chr9 30831880 30832297 -87030330 - LTR14B LTR ERVK 0 608 1 889 143 81 81 chr9 30832299 30832557 -87030070 + L1MA7 LINE L1 6030 6287 -4 269 318 65 0 chr9 30833778 30833885 -87028742 + L2 LINE L2 3195 3308 -5 310 330 21 10 chr9 30834411 30834508 -87028119 - MIR SINE MIR -152 110 13 22 0 0 0 chr9 30834945 30834967 -87027660 + AT_rich Low_complexity Low_complexity 1 22 0 285 135 0 0 chr9 30836179 30836231 -87026396 + (GGAGA)n Simple_repeat Simple_repeat 2 53 0 2654 229 19 0 chr9 30836810 30837438 -87025189 + L1 LINE L1 3859 4498 -1648 4960 141 38 1 chr9 30837448 30838790 -87023837 + L1PA16 LINE L1 4797 6162 -4 2511 233 50 44 chr9 30840081 30840504 -87022123 - L1ME1 LINE L1 -3 6163 5731 2515 57 0 10 chr9 30840504 30840818 -87021809 - AluY SINE Alu 0 311 1 2511 233 50 44 chr9 30840818 30841219 -87021408 - L1ME1 LINE L1 -435 5731 5334 3282 249 68 31 chr9 30841245 30841901 -87020726 - L1M4 LINE L1 -512 5672 5042 240 35 0 0 chr9 30841901 30841930 -87020697 + (TG)n Simple_repeat Simple_repeat 1 29 0 3282 249 68 31 chr9 30841930 30842941 -87019686 - L1M4 LINE L1 -1142 5042 3943 274 176 0 39 chr9 30842948 30842999 -87019628 + AluSp SINE Alu 139 187 -116 428 169 22 22 chr9 30843000 30843089 -87019538 + FLAM_A SINE Alu 40 128 -14 1551 218 59 60 chr9 30843100 30843679 -87018948 - L1M4 LINE L1 -2203 3943 3366 582 281 42 0 chr9 30843763 30844001 -87018626 - L1M4 LINE L1 -2979 3167 2920 3749 120 9 3 chr9 30844011 30844577 -87018050 - L1PA12 LINE L1 0 6168 5600 2250 102 27 0 chr9 30844577 30844912 -87017715 + L1PA12 LINE L1 5260 5603 -565 552 285 6 0 chr9 30845011 30845183 -87017444 - L1M4 LINE L1 -3275 2871 2699 2069 133 3 0 chr9 30845763 30846063 -87016564 + AluSx SINE Alu 1 301 -11 249 298 40 66 chr9 30846064 30846215 -87016412 + MIR SINE MIR 47 193 -69 550 88 12 0 chr9 30846604 30846684 -87015943 - L1 LINE L1 -1561 4585 4505 1279 212 40 105 chr9 30846684 30846879 -87015748 + MLT1D LTR MaLR 102 255 -250 512 200 8 50 chr9 30846879 30846999 -87015628 + FLAM_A SINE Alu 1 115 -18 1279 212 40 105 chr9 30846999 30847233 -87015394 + MLT1D LTR MaLR 255 503 -2 28 48 0 0 chr9 30847848 30847890 -87014737 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr9 30848045 30848066 -87014561 + AT_rich Low_complexity Low_complexity 1 21 0 26 64 0 0 chr9 30848553 30848600 -87014027 + AT_rich Low_complexity Low_complexity 1 47 0 25 31 0 0 chr9 30848685 30848717 -87013910 + AT_rich Low_complexity Low_complexity 1 32 0 22 80 0 0 chr9 30848973 30849023 -87013604 + AT_rich Low_complexity Low_complexity 1 50 0 268 288 15 0 chr9 30849170 30849236 -87013391 + MIR SINE MIR 1 67 -195 3711 210 58 11 chr9 30849478 30850486 -87012141 + L1MB2 LINE L1 5111 6165 -6 335 269 138 25 chr9 30850563 30850723 -87011904 + MIR SINE MIR 85 262 0 243 206 0 0 chr9 30852339 30852402 -87010225 + L1MC4 LINE L1 6641 6703 -1339 230 296 23 0 chr9 30852402 30852490 -87010137 + (TATATG)n Simple_repeat Simple_repeat 4 93 0 1739 169 25 66 chr9 30852597 30853004 -87009623 + MLT1B LTR MaLR 1 390 0 1934 214 39 5 chr9 30853241 30853653 -87008974 + MSTB LTR MaLR 1 426 0 6779 244 23 67 chr9 30853653 30854703 -87007924 + MSTB-int LTR MaLR 1 947 -704 1818 44 4 0 chr9 30854703 30854929 -87007698 + L1PA5 LINE L1 5926 6154 0 6779 244 23 67 chr9 30854929 30855605 -87007022 + MSTB-int LTR MaLR 947 1651 0 2180 188 44 5 chr9 30855605 30856015 -87006612 + MSTB LTR MaLR 1 426 0 26 50 0 0 chr9 30856347 30856387 -87006240 + AT_rich Low_complexity Low_complexity 1 40 0 1737 338 56 30 chr9 30857578 30858456 -87004171 + L1M4b LINE L1 20 920 -5939 186 171 0 0 chr9 30858477 30858518 -87004109 + G-rich Low_complexity Low_complexity 1 41 0 369 352 62 6 chr9 30858632 30858794 -87003833 - L1M4b LINE L1 -6274 585 415 701 232 72 91 chr9 30858804 30859341 -87003286 + L1M4b LINE L1 899 1487 -5372 1836 294 53 21 chr9 30859392 30860282 -87002345 + L1M4b LINE L1 1489 2406 -4553 282 200 17 0 chr9 30860600 30860660 -87001967 + L1M4b LINE L1 4002 4062 -2895 339 44 0 0 chr9 30860705 30860750 -87001877 + (CA)n Simple_repeat Simple_repeat 2 46 0 1735 127 65 0 chr9 30861061 30861336 -87001291 - AluSq SINE Alu -20 293 1 39 60 0 0 chr9 30861337 30861404 -87001223 + AT_rich Low_complexity Low_complexity 1 67 0 3158 261 59 23 chr9 30861404 30862734 -86999893 + L1M4 LINE L1 2387 3764 -2382 1097 255 19 53 chr9 30862780 30863156 -86999471 + MLT2C1 LTR ERVL 31 393 -4 1350 278 79 37 chr9 30863313 30863881 -86998746 + L1MA8 LINE L1 466 1057 -6432 2644 256 59 21 chr9 30863894 30865354 -86997273 + L1MA8 LINE L1 1885 4385 -3180 * 4441 185 33 14 chr9 30865340 30866327 -86996300 + L1MA8 LINE L1 6702 7707 -3 2007 112 7 0 chr9 30866332 30866637 -86995990 + AluSg SINE Alu 1 307 0 266 368 11 6 chr9 30867576 30867750 -86994877 + L1MEc LINE L1 32 206 -6190 25 31 0 0 chr9 30870351 30870383 -86992244 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr9 30870658 30870679 -86991948 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr9 30870841 30870866 -86991761 + AT_rich Low_complexity Low_complexity 1 25 0 208 176 0 20 chr9 30871109 30871160 -86991467 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 2915 138 8 4 chr9 30871284 30871755 -86990872 + L1PA16 LINE L1 5689 6161 -5 26 30 0 0 chr9 30872147 30872180 -86990447 + AT_rich Low_complexity Low_complexity 1 33 0 322 285 32 32 chr9 30872435 30872558 -86990069 - L2 LINE L2 0 3313 3191 439 281 23 6 chr9 30875463 30875634 -86986993 + MER104 DNA Tc2 5 178 -2 419 190 58 50 chr9 30875811 30875932 -86986695 - L1MA9 LINE L1 -4 6308 6187 931 244 39 54 chr9 30878433 30878765 -86983862 - MER58B DNA MER1_type -9 332 6 212 100 25 0 chr9 30878947 30878987 -86983640 + (TA)n Simple_repeat Simple_repeat 2 42 0 3136 201 6 6 chr9 30879013 30879024 -86983603 + L1P LINE L1 4616 4626 -1525 4771 89 36 23 chr9 30879024 30879752 -86982875 - L1PB1 LINE L1 -2 6149 5413 3136 201 6 6 chr9 30879752 30880501 -86982126 + L1P LINE L1 4626 5375 -776 267 103 0 0 chr9 30880515 30880554 -86982073 + (TG)n Simple_repeat Simple_repeat 2 40 0 217 256 23 0 chr9 30880554 30880640 -86981987 + (TA)n Simple_repeat Simple_repeat 2 89 0 997 248 111 84 chr9 30880658 30881218 -86981409 + MLT1E1 LTR MaLR 76 650 -4 189 130 130 37 chr9 30883051 30883105 -86979522 - MER5A DNA MER1_type -111 78 20 38 89 0 0 chr9 30883613 30883714 -86978913 + AT_rich Low_complexity Low_complexity 1 101 0 21 71 0 0 chr9 30884916 30884958 -86977669 + AT_rich Low_complexity Low_complexity 1 42 0 356 271 0 74 chr9 30885539 30885661 -86976966 - MIR SINE MIR -121 141 29 2141 120 0 7 chr9 30885667 30885967 -86976660 - AluSx SINE Alu -12 300 3 4520 135 16 60 chr9 30886423 30887287 -86975340 - L1PA16 LINE L1 0 6166 5341 363 23 0 0 chr9 30887513 30887557 -86975070 + (CA)n Simple_repeat Simple_repeat 1 44 0 13707 46 6 3 chr9 30890841 30893330 -86969297 - L1PA5 LINE L1 -5 6149 3653 2016 142 51 20 chr9 30893823 30894176 -86968451 + THE1B LTR MaLR 1 364 0 3317 271 77 11 chr9 30895428 30896539 -86966088 + L1PA13 LINE L1 24 1250 -5537 4791 184 13 15 chr9 30896549 30897527 -86965100 + L1PA13 LINE L1 1396 2309 -4489 * 6469 61 16 2 chr9 30897511 30898537 -86964090 + L1P2 LINE L1 4524 5562 -592 410 318 123 68 chr9 30898597 30899169 -86963458 + L1M4 LINE L1 3743 4356 -1790 1012 273 35 20 chr9 30899476 30899824 -86962803 + LTR38 LTR ERV1 2 354 -202 2212 191 49 71 chr9 30899983 30900518 -86962109 + LTR38-int LTR ERV1 157 679 -1107 354 239 60 42 chr9 30901134 30901301 -86961326 + LTR38-int LTR ERV1 1439 1608 -5068 188 100 25 0 chr9 30902038 30902078 -86960549 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 1670 216 33 71 chr9 30902503 30902760 -86959867 + LTR38 LTR ERV1 1 266 -290 2255 91 3 3 chr9 30902760 30903056 -86959571 + AluSg SINE Alu 1 296 -14 1670 216 33 71 chr9 30903056 30903376 -86959251 + LTR38 LTR ERV1 266 556 0 2258 105 3 7 chr9 30903494 30903799 -86958828 + AluSc SINE Alu 1 304 -5 299 348 33 0 chr9 30904475 30904567 -86958060 + MER58 DNA MER1_type 2 96 -2324 433 186 0 12 chr9 30904581 30904667 -86957960 + MER58 DNA MER1_type 2336 2420 0 635 247 163 0 chr9 30905303 30905481 -86957146 - MER3 DNA MER1_type 0 209 3 252 333 38 50 chr9 30905612 30905771 -86956856 - L2 LINE L2 -960 2354 2198 239 357 31 0 chr9 30905853 30905951 -86956676 - LTR67 LTR ERVL -86 471 371 338 330 9 38 chr9 30906072 30906178 -86956449 - LTR67 LTR ERVL -367 190 88 4877 79 3 2 chr9 30906403 30907048 -86955579 - L1PA8 LINE L1 -7 6165 5520 1351 92 0 73 chr9 30907048 30907266 -86955361 + AluY SINE Alu 100 301 -10 1331 100 3 19 chr9 30907266 30907510 -86955117 - L1P3 LINE L1 -627 5527 5290 325 377 0 9 chr9 30907604 30907710 -86954917 - L2 LINE L2 -10 3262 3158 1014 206 174 82 chr9 30907960 30908276 -86954351 - MER2 DNA MER2_type 0 345 1 1244 157 0 5 chr9 30908493 30908691 -86953936 - LTR29 LTR ERV1 0 622 426 254 197 98 0 chr9 30908692 30908753 -86953874 + L1 LINE L1 4213 4279 -1867 446 169 0 0 chr9 30908754 30908831 -86953796 + MLT1B LTR MaLR 72 148 -242 1986 245 18 16 chr9 30908836 30909330 -86953297 - MER41E LTR ERV1 -5 507 13 926 216 12 66 chr9 30909700 30909941 -86952686 + MLT1B LTR MaLR 143 370 -20 639 201 6 41 chr9 30912060 30912229 -86950398 - L1PA16 LINE L1 0 6166 6004 611 152 0 0 chr9 30912336 30912428 -86950199 - AluJ/FLAM SINE Alu -220 92 1 3347 148 33 7 chr9 30912428 30913011 -86949616 - L1PA16 LINE L1 -230 5936 5339 962 299 80 35 chr9 30913011 30913374 -86949253 - HsTC2a DNA Tc2 -1306 594 196 189 74 0 0 chr9 30913374 30913401 -86949226 + (TG)n Simple_repeat Simple_repeat 2 28 0 962 299 80 35 chr9 30913401 30913603 -86949024 - HsTC2a DNA Tc2 -1704 196 4 25 0 0 0 chr9 30913672 30913697 -86948930 + AT_rich Low_complexity Low_complexity 1 25 0 216 0 0 0 chr9 30914361 30914385 -86948242 + (TC)n Simple_repeat Simple_repeat 2 25 0 515 298 78 55 chr9 30914512 30914618 -86948009 - Charlie7 DNA MER1_type -2114 498 396 2159 122 6 3 chr9 30914618 30914930 -86947697 + AluSq SINE Alu 1 313 0 515 298 78 55 chr9 30914930 30915310 -86947317 - Charlie7 DNA MER1_type -2216 396 1 24 32 0 0 chr9 30916240 30916271 -86946356 + AT_rich Low_complexity Low_complexity 1 31 0 374 38 0 19 chr9 30916857 30916910 -86945717 + (TA)n Simple_repeat Simple_repeat 2 53 0 784 87 0 0 chr9 30917019 30917122 -86945505 - L1PA10 LINE L1 -16 6152 6050 3281 83 7 0 chr9 30917122 30917566 -86945061 + L1PA10 LINE L1 5567 6013 -155 275 256 56 22 chr9 30918133 30918223 -86944404 - ERVL LTR ERVL -956 4808 4716 2006 78 20 0 chr9 30918636 30918891 -86943736 - AluSc SINE Alu -27 282 23 945 251 85 15 chr9 30919174 30919587 -86943040 + MLT1D LTR MaLR 22 467 0 538 335 146 29 chr9 30919771 30920263 -86942364 - ERVL LTR ERVL -3343 2421 1872 356 387 86 0 chr9 30922542 30922728 -86939899 + MIR SINE MIR 4 205 -57 21 0 0 0 chr9 30922866 30922887 -86939740 + AT_rich Low_complexity Low_complexity 1 21 0 4468 79 12 3 chr9 30923210 30923815 -86938812 + L1PA11 LINE L1 5559 6168 -6 312 240 130 27 chr9 30924149 30924295 -86938332 - MLT1L LTR MaLR 0 615 455 602 268 19 131 chr9 30924646 30925067 -86937560 - MLT1A2 LTR MaLR 0 374 1 1451 220 13 19 chr9 30925250 30925563 -86937064 - AluJo SINE Alu -1 311 1 245 367 129 11 chr9 30925936 30926315 -86936312 - L2 LINE L2 -826 2488 2065 1351 211 43 19 chr9 30926858 30927180 -86935447 + MER2 DNA MER2_type 15 344 -1 3236 245 64 10 chr9 30929907 30930891 -86931736 + L1PB1 LINE L1 6 1042 -5821 10082 194 32 69 chr9 30930898 30933572 -86929055 + L1PB1 LINE L1 1093 3865 -3002 310 148 0 0 chr9 30933572 30933626 -86929001 + L1PB4 LINE L1 6099 6152 -4 10082 194 32 69 chr9 30933626 30936896 -86925731 + L1PB1 LINE L1 3865 6866 -1 260 306 61 96 chr9 30936988 30937249 -86925378 - L3 LINE CR1 -392 1185 934 545 162 26 8 chr9 30937707 30937824 -86924803 - L1MA7 LINE L1 -5 6286 6168 1060 209 82 30 chr9 30938174 30938442 -86924185 - AluJo SINE Alu -16 286 5 1889 128 0 11 chr9 30939477 30939751 -86922876 + AluSc SINE Alu 1 271 -38 200 185 19 0 chr9 30939761 30939815 -86922812 + GA-rich Low_complexity Low_complexity 4 58 0 1086 270 61 19 chr9 30940211 30940570 -86922057 + L1ME1 LINE L1 5786 6159 -7 295 391 8 0 chr9 30941037 30941165 -86921462 + L2 LINE L2 2919 3047 -225 988 249 0 0 chr9 30941607 30941808 -86920819 + MER58A DNA MER1_type 9 209 -15 229 279 96 67 chr9 30942062 30942166 -86920461 + MIR3 SINE MIR 49 155 -53 246 298 149 35 chr9 30942525 30942666 -86919961 - MIR3 SINE MIR -15 193 37 385 185 0 2 chr9 30942965 30943047 -86919580 + MIR SINE MIR 68 148 -60 463 307 111 23 chr9 30943111 30943583 -86919044 - MLT1F LTR MaLR -6 549 48 1891 114 114 35 chr9 30944647 30945016 -86917611 - LTR14B LTR ERVK 0 608 211 283 83 0 42 chr9 30945004 30945052 -86917575 - LTR14B LTR ERVK -562 46 1 * 724 35 52 95 chr9 30945055 30945171 -86917456 - HERVK14 LTR ERVK 0 5945 5835 291 196 0 33 chr9 30945171 30945247 -86917380 - MER41C LTR ERV1 -493 61 1 3188 75 26 15 chr9 30945247 30945892 -86916735 - HERVK14 LTR ERVK -186 5759 5038 311 62 0 0 chr9 30945893 30945941 -86916686 - HERV17 LTR ERV1 -8146 480 433 753 113 57 21 chr9 30945944 30946085 -86916542 - HERV17 LTR ERV1 -3076 5550 5405 * 9571 59 40 26 chr9 30946064 30947371 -86915256 - HERV17 LTR ERV1 -4872 3754 2430 8236 72 20 36 chr9 30947356 30948145 -86914482 - HERV17 LTR ERV1 -6612 2014 1247 * 355 40 0 20 chr9 30948145 30948195 -86914432 - L1PA6 LINE L1 -8 6146 6098 8236 72 20 36 chr9 30948195 30948573 -86914054 - HERV17 LTR ERV1 -7379 1247 865 5389 96 25 3 chr9 30948642 30949410 -86913217 - HERVK14 LTR ERVK -5160 785 1 1740 108 73 99 chr9 30949410 30949812 -86912815 - LTR14B LTR ERVK 0 608 7 1629 263 74 82 chr9 30950474 30951368 -86911259 - L1ME LINE L1 -5182 888 2 24 77 0 0 chr9 30951885 30951937 -86910690 + AT_rich Low_complexity Low_complexity 1 52 0 22 0 0 0 chr9 30952536 30952558 -86910069 + AT_rich Low_complexity Low_complexity 1 22 0 1733 193 68 49 chr9 30952583 30952992 -86909635 + MSTB LTR MaLR 1 417 -9 1628 142 4 4 chr9 30953788 30954063 -86908564 - L1M1 LINE L1 -4176 3389 3115 * 10329 158 35 7 chr9 30954062 30957143 -86905484 + L1MA1 LINE L1 3134 6302 0 24 67 0 0 chr9 30958188 30958233 -86904394 + AT_rich Low_complexity Low_complexity 1 45 0 219 294 0 59 chr9 30958964 30959049 -86903578 + L2 LINE L2 3234 3313 0 299 286 41 10 chr9 30959138 30959236 -86903391 + L1ME2 LINE L1 4069 4169 -1977 971 186 0 54 chr9 30959237 30959441 -86903186 + AluJb SINE Alu 37 229 -83 1799 259 98 40 chr9 30959460 30960622 -86902005 + L1ME2 LINE L1 4920 6154 -10 715 215 35 56 chr9 30961440 30961728 -86900899 - Zaphod DNA AcHobo -1726 2305 2024 22 35 0 0 chr9 30961732 30961761 -86900866 + AT_rich Low_complexity Low_complexity 1 29 0 794 334 58 33 chr9 30962079 30962444 -86900183 - Zaphod DNA AcHobo -3657 374 1 2322 70 15 12 chr9 30964920 30965248 -86897379 - L1PA7 LINE L1 -7 6147 5819 478 251 33 107 chr9 30965375 30965741 -86896886 + L1ME3A LINE L1 5255 5593 -577 1163 272 60 99 chr9 30965777 30966497 -86896130 + MER21B LTR ERV1 22 713 -150 796 269 34 24 chr9 30966505 30966799 -86895828 + L1ME3A LINE L1 5605 5901 -269 292 321 52 52 chr9 30966933 30967126 -86895501 + L1ME3A LINE L1 5962 6154 -16 26 30 0 0 chr9 30967757 30967790 -86894837 + AT_rich Low_complexity Low_complexity 1 33 0 23 78 0 0 chr9 30967844 30967895 -86894732 + AT_rich Low_complexity Low_complexity 1 51 0 273 236 0 0 chr9 30968071 30968126 -86894501 - MER5A DNA MER1_type -83 106 52 695 261 37 21 chr9 30969403 30969591 -86893036 - MIR SINE MIR -2 260 70 25 51 0 0 chr9 30970511 30970550 -86892077 + AT_rich Low_complexity Low_complexity 1 39 0 2823 90 17 68 chr9 30972004 30972472 -86890155 - MLT2A1 LTR ERVL 0 444 1 28 48 0 0 chr9 30972636 30972678 -86889949 + AT_rich Low_complexity Low_complexity 1 42 0 201 214 18 18 chr9 30973511 30973567 -86889060 + (TATATG)n Simple_repeat Simple_repeat 3 58 0 641 221 62 101 chr9 30973893 30974321 -86888306 - LTR1B LTR ERV1 -486 745 1 425 258 52 48 chr9 30974466 30974591 -86888036 + L1M4 LINE L1 4455 4578 -1568 1810 172 18 15 chr9 30974591 30974934 -86887693 + MER2 DNA MER2_type 1 344 0 425 258 52 48 chr9 30974934 30975060 -86887567 + L1M4 LINE L1 4578 4707 -1439 1534 228 55 3 chr9 30975767 30976113 -86886514 + MLT2D LTR ERVL 1 364 -50 411 68 0 0 chr9 30976113 30976172 -86886455 + (TC)n Simple_repeat Simple_repeat 2 60 0 5618 207 18 42 chr9 30977619 30978188 -86884439 + L1MA9 LINE L1 3999 4580 -1732 2283 99 0 13 chr9 30978188 30978490 -86884137 + AluY SINE Alu 2 299 -12 5618 207 18 42 chr9 30978490 30978819 -86883808 + L1MA9 LINE L1 4580 4915 -1397 1726 157 45 50 chr9 30978819 30979196 -86883431 + THE1C LTR MaLR 1 375 0 8262 147 91 9 chr9 30979196 30980655 -86881972 + THE1C-int LTR MaLR 1 1579 -1 1586 182 40 50 chr9 30980656 30981035 -86881592 + THE1C LTR MaLR 1 375 0 5618 207 18 42 chr9 30981035 30981943 -86880684 + L1MA9 LINE L1 4914 5742 -570 2197 104 3 0 chr9 30981943 30982232 -86880395 + AluSc SINE Alu 3 292 -17 5618 207 18 42 chr9 30982232 30982747 -86879880 + L1MA9 LINE L1 5742 6267 -45 399 276 20 116 chr9 30983397 30983642 -86878985 - MIR SINE MIR -14 248 22 26 50 0 0 chr9 30983932 30983972 -86878655 + AT_rich Low_complexity Low_complexity 1 40 0 25 0 0 0 chr9 30983991 30984016 -86878611 + AT_rich Low_complexity Low_complexity 1 25 0 29 78 0 0 chr9 30984153 30984217 -86878410 + AT_rich Low_complexity Low_complexity 1 64 0 637 303 149 58 chr9 30984455 30985174 -86877453 + L1M4 LINE L1 98 881 -5661 8542 189 33 139 chr9 30985343 30987669 -86874958 + L1M2c LINE L1 3 1959 -4830 1533 164 66 41 chr9 30987669 30988035 -86874592 - THE1C LTR MaLR 0 375 1 8542 189 33 139 chr9 30988035 30988621 -86874006 + L1M2c LINE L1 1959 2605 -4184 5958 231 49 26 chr9 30988734 30990410 -86872217 + L1M2c LINE L1 2597 4333 -2455 264 59 0 0 chr9 30990410 30990444 -86872183 + (CA)n Simple_repeat Simple_repeat 2 35 0 5958 231 49 26 chr9 30990444 30990704 -86871923 + L1M2c LINE L1 4333 4586 -2202 1570 273 88 18 chr9 30990724 30991779 -86870848 + L1M4 LINE L1 946 2059 -4587 1434 179 9 63 chr9 30991804 30992123 -86870504 + AluJb SINE Alu 1 302 0 267 301 77 35 chr9 30992244 30992530 -86870097 + L1M4 LINE L1 2294 2591 -4055 2173 111 7 0 chr9 30992630 30992928 -86869699 - AluSg SINE Alu -8 302 3 23 0 0 0 chr9 30995631 30995654 -86866973 + AT_rich Low_complexity Low_complexity 1 23 0 911 172 52 11 chr9 30996011 30996185 -86866442 + MSTA LTR MaLR 1 181 -247 8204 189 30 1 chr9 30996185 30997695 -86864932 + MSTA-int LTR MaLR 99 1651 0 2015 172 52 7 chr9 30997697 30998103 -86864524 + MSTA LTR MaLR 5 428 0 1346 319 57 23 chr9 30998612 30999229 -86863398 + L2 LINE L2 2313 2950 -364 25 0 0 0 chr9 31001669 31001694 -86860933 + AT_rich Low_complexity Low_complexity 1 25 0 200 250 28 0 chr9 31002242 31002314 -86860313 + (TA)n Simple_repeat Simple_repeat 2 75 0 414 0 0 0 chr9 31003076 31003122 -86859505 + (TG)n Simple_repeat Simple_repeat 2 47 0 2638 20 0 0 chr9 31003611 31003915 -86858712 - L1PA5 LINE L1 -9 6145 5842 25 31 0 0 chr9 31003946 31003978 -86858649 + AT_rich Low_complexity Low_complexity 1 32 0 1274 231 16 19 chr9 31004154 31004465 -86858162 - AluJo SINE Alu -2 310 1 719 169 0 0 chr9 31004485 31004603 -86858024 - FLAM_C SINE Alu -15 118 1 1900 136 71 14 chr9 31004700 31005053 -86857574 + THE1C LTR MaLR 1 373 -2 13287 154 27 18 chr9 31005725 31008114 -86854513 - Tigger1 DNA MER2_type -4 2414 4 2120 106 3 33 chr9 31008768 31009071 -86853556 - AluSg SINE Alu -14 296 3 583 167 48 124 chr9 31009979 31010189 -86852438 - L1MC2 LINE L1 0 6344 6151 1671 236 98 83 chr9 31010191 31011076 -86851551 - L1M4 LINE L1 -5015 1840 948 1152 161 79 20 chr9 31011063 31011317 -86851310 - L1MA9 LINE L1 0 6312 6044 * 463 202 22 0 chr9 31011337 31011426 -86851201 - L1M4 LINE L1 -6765 94 4 228 185 19 0 chr9 31011802 31011856 -86850771 + T-rich Low_complexity Low_complexity 5 59 0 24 93 0 0 chr9 31011864 31011918 -86850709 + AT_rich Low_complexity Low_complexity 1 54 0 577 159 38 38 chr9 31012019 31012151 -86850476 - L1MA7 LINE L1 -25 6266 6135 1896 261 0 2 chr9 31012152 31012566 -86850061 + L1PA15 LINE L1 2 414 -6373 * 7475 227 18 16 chr9 31012561 31014429 -86848198 + L1PA15 LINE L1 3533 5404 -1393 4556 186 44 15 chr9 31014422 31014855 -86847772 + L1PA15 LINE L1 5674 6093 -723 * 2236 108 7 0 chr9 31014855 31015160 -86847467 + AluSc SINE Alu 3 309 0 4556 186 44 15 chr9 31015160 31015828 -86846799 + L1PA15 LINE L1 6093 6815 -1 3090 183 14 16 chr9 31015831 31016454 -86846173 - L1MA7 LINE L1 -148 6143 5522 504 190 0 43 chr9 31016800 31016870 -86845757 + MER20 DNA MER1_type 109 174 -45 261 0 0 0 chr9 31016870 31016899 -86845728 + (TA)n Simple_repeat Simple_repeat 1 29 0 504 190 0 43 chr9 31016899 31016944 -86845683 + MER20 DNA MER1_type 174 219 0 281 250 48 77 chr9 31017016 31017120 -86845507 - L2 LINE L2 -31 3241 3141 378 42 0 0 chr9 31019216 31019264 -86843363 + (TG)n Simple_repeat Simple_repeat 1 48 0 379 309 56 38 chr9 31019836 31020132 -86842495 - LTR16C LTR ERVL 0 491 149 26 50 0 0 chr9 31020536 31020576 -86842051 + AT_rich Low_complexity Low_complexity 1 40 0 231 342 29 98 chr9 31021212 31021487 -86841140 - L2 LINE L2 -81 3191 2936 45 45 0 0 chr9 31021741 31021807 -86840820 + AT_rich Low_complexity Low_complexity 1 66 0 1573 204 32 26 chr9 31022070 31022447 -86840180 - L1PA16 LINE L1 -16 6150 5772 198 165 35 26 chr9 31022550 31022665 -86839962 + (TTATA)n Simple_repeat Simple_repeat 2 117 0 204 329 26 13 chr9 31023185 31023261 -86839366 - L3 LINE CR1 -1 1576 1500 350 291 73 0 chr9 31023390 31023500 -86839127 + MIR SINE MIR 37 154 -108 1036 131 0 7 chr9 31223502 31223655 -86638972 - AluSq/x SINE Alu -160 152 1 1308 206 73 6 chr9 31223717 31224047 -86638580 - L1 LINE L1 -1161 4985 4634 4321 225 86 53 chr9 31224079 31224371 -86638256 - L1MC3 LINE L1 -911 6874 6593 2093 107 3 17 chr9 31224371 31224670 -86637957 - AluSp SINE Alu -7 306 12 4321 225 86 53 chr9 31224670 31225066 -86637561 - L1MC3 LINE L1 -1192 6593 6212 2157 121 0 7 chr9 31225066 31225364 -86637263 + AluSq SINE Alu 1 296 -17 4321 225 86 53 chr9 31225364 31226082 -86636545 - L1MC3 LINE L1 -1573 6212 5420 705 316 71 21 chr9 31226193 31226532 -86636095 + MER110 LTR ERV1 9 364 -127 1774 10 5 5 chr9 31227108 31227313 -86635314 - AluYa5 SINE Alu -4 307 103 4230 202 26 7 chr9 31227430 31228482 -86634145 + L1MB1 LINE L1 5093 6165 -3 2390 217 71 26 chr9 31228660 31229305 -86633322 + L1MC3 LINE L1 6856 7529 -256 2064 158 64 33 chr9 31230113 31230628 -86631999 - MLT2A2 LTR ERVL 0 554 1 318 178 0 41 chr9 31231112 31231185 -86631442 - pTR5 LTR ERV1 -27 687 78 225 112 92 122 chr9 31231192 31231290 -86631337 - MER61E LTR ERV1 -103 466 372 488 161 0 0 chr9 31232192 31232273 -86630354 - MLT2A2 LTR ERVL -10 443 363 2461 137 51 0 chr9 31232273 31232666 -86629961 + MER4E LTR ERV1 1 413 -366 187 298 0 0 chr9 31232873 31232920 -86629707 + L3 LINE CR1 1530 1576 -1 443 180 156 31 chr9 31233026 31233156 -86629471 + MIR SINE MIR 49 188 -63 229 238 16 16 chr9 31234159 31234222 -86628405 + (CATATA)n Simple_repeat Simple_repeat 2 64 0 25 0 0 0 chr9 31234258 31234283 -86628344 + AT_rich Low_complexity Low_complexity 1 25 0 1633 156 9 61 chr9 31234475 31234801 -86627826 + AluJo SINE Alu 1 309 -3 1139 174 56 77 chr9 31234871 31235158 -86627469 + AluJo SINE Alu 12 292 -20 248 267 0 0 chr9 31235159 31235249 -86627378 + L1MC4 LINE L1 6614 6703 -1339 261 0 0 0 chr9 31235249 31235278 -86627349 + (TA)n Simple_repeat Simple_repeat 1 29 0 814 30 10 0 chr9 31235454 31235554 -86627073 - AluYa5 SINE Alu -182 129 29 326 258 30 53 chr9 31237076 31237208 -86625419 + L1MC4 LINE L1 6588 6716 -1326 399 190 17 35 chr9 31237244 31237322 -86625305 + (TA)n Simple_repeat Simple_repeat 2 80 -92 2257 192 9 9 chr9 31237322 31237754 -86624873 + Tigger2a DNA MER2_type 3 434 0 399 190 17 35 chr9 31237754 31237849 -86624778 + (TA)n Simple_repeat Simple_repeat 80 172 0 415 284 89 71 chr9 31240154 31240436 -86622191 + MLT1L LTR MaLR 144 430 -185 1889 101 4 40 chr9 31240764 31241041 -86621586 + AluSq SINE Alu 23 289 -24 28 0 0 0 chr9 31241041 31241069 -86621558 + AT_rich Low_complexity Low_complexity 1 28 0 191 286 0 0 chr9 31242523 31242572 -86620055 + MER5A DNA MER1_type 27 75 -114 1225 278 106 9 chr9 31243030 31243483 -86619144 + L1ME3 LINE L1 5596 6092 -70 21 82 0 0 chr9 31243836 31243885 -86618742 + AT_rich Low_complexity Low_complexity 1 49 0 928 267 11 40 chr9 31244297 31244574 -86618053 - MLT1A2 LTR MaLR 0 374 106 224 342 36 27 chr9 31245530 31245641 -86616986 + L2 LINE L2 2893 3004 -268 432 317 97 36 chr9 31245908 31246239 -86616388 - HAL1 LINE L1 -2146 361 11 956 273 60 25 chr9 31246606 31246925 -86615702 + MLT1E2 LTR MaLR 1 330 -294 2009 163 44 38 chr9 31246925 31247469 -86615158 - MLT2A2 LTR ERVL 0 554 1 13341 100 11 2 chr9 31247469 31249314 -86613313 - HERVL-A2 LTR ERVL 0 5654 3793 4021 91 2 18 chr9 31249305 31249864 -86612763 - HERVL-A2 LTR ERVL -2091 3563 3014 * 1245 186 39 56 chr9 31249868 31250174 -86612453 + MLT1E2 LTR MaLR 326 626 0 2312 67 0 10 chr9 31250605 31250905 -86611722 - AluY SINE Alu -14 297 1 2936 163 2 4 chr9 31251541 31252039 -86610588 + LOR1a LTR ERV1 1 497 0 223 306 90 0 chr9 31252505 31252616 -86610011 - MIR SINE MIR -65 197 77 272 316 34 8 chr9 31252998 31253115 -86609512 - MIR SINE MIR -25 237 118 21 36 0 0 chr9 31253146 31253174 -86609453 + AT_rich Low_complexity Low_complexity 1 28 0 1163 201 9 0 chr9 31254188 31254402 -86608225 - MLT1B LTR MaLR 0 390 175 195 241 46 81 chr9 31255479 31255566 -86607061 - MIR SINE MIR -73 189 106 205 333 83 8 chr9 31255962 31256082 -86606545 - MIR SINE MIR -62 200 72 26 0 0 0 chr9 31256312 31256338 -86606289 + AT_rich Low_complexity Low_complexity 1 26 0 233 135 0 0 chr9 31257381 31257418 -86605209 - L1MA4A LINE L1 -154 6149 6113 509 192 8 0 chr9 31257418 31257538 -86605089 + L1MA5 LINE L1 6180 6300 0 219 268 31 62 chr9 31257583 31257680 -86604947 - MIR SINE MIR -77 185 92 21 71 0 0 chr9 31258107 31258149 -86604478 + AT_rich Low_complexity Low_complexity 1 42 0 28 61 0 0 chr9 31258463 31258512 -86604115 + AT_rich Low_complexity Low_complexity 1 49 0 1059 176 5 5 chr9 31258743 31258942 -86603685 - L1 LINE L1 -1333 4813 4615 1359 240 23 31 chr9 31258944 31259423 -86603204 - L1 LINE L1 -1581 4565 4091 * 4019 197 21 50 chr9 31259421 31259812 -86602815 + L1MA10 LINE L1 5006 5407 -927 2123 104 16 0 chr9 31259812 31260120 -86602507 + AluSp SINE Alu 1 313 0 4019 197 21 50 chr9 31260120 31261051 -86601576 + L1MA10 LINE L1 5407 6286 -48 338 237 58 45 chr9 31261050 31261206 -86601421 - L1MC3 LINE L1 -35 7750 7593 * 274 244 122 12 chr9 31261221 31261303 -86601324 - L1MC/D LINE L1 -2255 5530 5440 1930 149 32 115 chr9 31261514 31261803 -86600824 + Tigger2a DNA MER2_type 3 240 -2468 1052 138 15 36 chr9 31261803 31261998 -86600629 + L1PA15 LINE L1 5972 6162 -3 1930 149 32 115 chr9 31261998 31262179 -86600448 + Tigger2a DNA MER2_type 240 434 0 246 241 24 0 chr9 31262787 31262870 -86599757 - HAL1 LINE L1 -951 1556 1472 446 300 67 48 chr9 31262943 31263273 -86599354 - HAL1b LINE L1 -997 351 16 22 88 0 0 chr9 31264406 31264463 -86598164 + AT_rich Low_complexity Low_complexity 1 57 0 1685 189 3 17 chr9 31264855 31265152 -86597475 - AluJb SINE Alu -14 298 6 25 75 0 0 chr9 31266482 31266535 -86596092 + AT_rich Low_complexity Low_complexity 1 53 0 22 0 0 0 chr9 31266645 31266667 -86595960 + AT_rich Low_complexity Low_complexity 1 22 0 42200 38 21 2 chr9 31266675 31272704 -86589923 + L1PA3 LINE L1 1 6151 -4 26 0 0 0 chr9 31272707 31272733 -86589894 + AT_rich Low_complexity Low_complexity 1 26 0 1419 256 46 38 chr9 31272826 31273326 -86589301 + MLT1D LTR MaLR 2 505 0 243 280 21 11 chr9 31273515 31273608 -86589019 + (TATATG)n Simple_repeat Simple_repeat 3 96 0 2099 120 3 0 chr9 31273811 31274111 -86588516 - AluSg SINE Alu -9 301 1 262 378 54 0 chr9 31274126 31274274 -86588353 - MIR SINE MIR -44 218 63 1672 173 41 54 chr9 31274659 31275028 -86587599 + THE1B LTR MaLR 1 364 0 297 101 14 0 chr9 31275488 31275535 -86587092 - L1M2 LINE L1 -483 5673 5633 1594 159 3 39 chr9 31275536 31275844 -86586783 + L1PB4 LINE L1 5860 6156 0 26 64 0 0 chr9 31276235 31276282 -86586345 + AT_rich Low_complexity Low_complexity 1 47 0 53 40 0 0 chr9 31276391 31276465 -86586162 + AT_rich Low_complexity Low_complexity 1 74 0 2196 102 36 117 chr9 31276465 31277109 -86585518 - MER4B LTR ERV1 -37 742 3 2005 133 0 32 chr9 31277123 31277432 -86585195 + AluSx SINE Alu 1 299 -13 1385 187 47 0 chr9 31277451 31277708 -86584919 + AluSx SINE Alu 1 269 -43 31 68 0 0 chr9 31277708 31277767 -86584860 + AT_rich Low_complexity Low_complexity 1 59 0 304 287 51 56 chr9 31278266 31278461 -86584166 - L2 LINE L2 -106 3207 3014 * 1099 305 89 71 chr9 31278449 31279210 -86583417 - L2 LINE L2 -576 2738 1964 21 0 0 0 chr9 31279401 31279422 -86583205 + AT_rich Low_complexity Low_complexity 1 21 0 501 271 33 22 chr9 31279516 31279697 -86582930 + L2 LINE L2 2156 2338 -976 240 35 0 0 chr9 31281359 31281388 -86581239 + (CA)n Simple_repeat Simple_repeat 1 29 0 2577 151 17 2 chr9 31281772 31282189 -86580438 - MSTA LTR MaLR -5 423 1 827 172 19 6 chr9 31284597 31284754 -86577873 + L1MC2 LINE L1 6175 6333 -11 303 322 91 25 chr9 31286143 31286264 -86576363 - L2 LINE L2 -5 3267 3139 190 143 0 0 chr9 31286658 31286686 -86575941 - L2 LINE L2 -3 3269 3242 1416 226 32 87 chr9 31286799 31287268 -86575359 - LTR40b LTR ERVL -19 443 1 2106 116 0 6 chr9 31288098 31288416 -86574211 - L1PB1 LINE L1 -1 6150 5835 1606 303 115 17 chr9 31288449 31289169 -86573458 - L2 LINE L2 -737 2577 1787 325 292 33 42 chr9 31289248 31289368 -86573259 - L2 LINE L2 -3192 122 4 23 86 0 0 chr9 31291866 31291924 -86570703 + AT_rich Low_complexity Low_complexity 1 58 0 253 263 0 0 chr9 31292252 31292309 -86570318 + (TG)n Simple_repeat Simple_repeat 2 58 0 21 36 0 0 chr9 31293021 31293049 -86569578 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr9 31293290 31293313 -86569314 + AT_rich Low_complexity Low_complexity 1 23 0 2733 133 24 18 chr9 31294609 31295062 -86567565 + L1PA14 LINE L1 5703 6158 -3 22 35 0 0 chr9 31295062 31295091 -86567536 + AT_rich Low_complexity Low_complexity 1 29 0 430 282 181 0 chr9 31296643 31296792 -86565835 + MER91A DNA MER1_type 1 176 -20 348 306 172 0 chr9 31296788 31296922 -86565705 + MIR SINE MIR 81 237 -25 * 337 305 96 27 chr9 31297274 31297445 -86565182 + MIR SINE MIR 15 192 -67 307 208 142 19 chr9 31297958 31298064 -86564563 - MER53 DNA DNA -70 119 1 3591 118 15 11 chr9 31299720 31300245 -86562382 + MER1A DNA MER1_type 1 527 0 1594 229 63 38 chr9 31300286 31300762 -86561865 + MLT1D LTR MaLR 1 488 -17 423 269 81 40 chr9 31300859 31301008 -86561619 - MIR SINE MIR -95 167 13 320 0 25 0 chr9 31301301 31301341 -86561286 + (CA)n Simple_repeat Simple_repeat 1 41 0 998 236 19 75 chr9 31302020 31302308 -86560319 + L1 LINE L1 4908 5174 -972 1804 154 116 43 chr9 31302308 31302704 -86559923 + MSTA LTR MaLR 1 425 -3 998 236 19 75 chr9 31302704 31302775 -86559852 + L1 LINE L1 5174 5247 -899 * 4100 190 43 19 chr9 31302774 31302972 -86559655 - L1 LINE L1 -1273 4873 4681 243 61 0 0 chr9 31302972 31303005 -86559622 + (TG)n Simple_repeat Simple_repeat 2 34 0 4100 190 43 19 chr9 31303005 31303771 -86558856 - L1 LINE L1 -1465 4681 3885 257 200 0 0 chr9 31303769 31303819 -86558808 - L1ME3 LINE L1 -8 6154 6105 * 493 229 52 57 chr9 31303936 31304128 -86558499 - L1ME3 LINE L1 -233 5931 5741 423 235 162 0 chr9 31304275 31304411 -86558216 - L1ME3 LINE L1 -398 5764 5607 496 262 48 19 chr9 31304737 31304953 -86557674 + MER106B DNA MER1_type 3 1042 -17 181 0 0 65 chr9 31305520 31305551 -86557076 + (TTTTTA)n Simple_repeat Simple_repeat 2 30 0 681 233 63 34 chr9 31306653 31306859 -86555768 + L2 LINE L2 3102 3313 0 1750 187 36 30 chr9 31307374 31307737 -86554890 + MLT1A1 LTR MaLR 1 365 0 1738 268 52 23 chr9 31307994 31308513 -86554114 - MLT1F LTR MaLR -2 540 7 442 316 101 60 chr9 31308839 31309342 -86553285 + L2 LINE L2 1264 1787 -1527 4881 120 33 3 chr9 31309343 31310107 -86552520 + L1P3 LINE L1 6 792 -5669 194 328 17 17 chr9 31310659 31310717 -86551910 + L2 LINE L2 3154 3211 -61 1732 164 3 67 chr9 31310878 31311238 -86551389 - MER1B DNA MER1_type 0 337 1 424 131 37 9 chr9 31311371 31311478 -86551149 + (TA)n Simple_repeat Simple_repeat 1 110 0 308 248 19 57 chr9 31311486 31311591 -86551036 - L1MC4 LINE L1 -1339 6703 6603 28 0 0 0 chr9 31311707 31311735 -86550892 + AT_rich Low_complexity Low_complexity 1 28 0 10620 196 23 12 chr9 31312269 31315219 -86547408 + L1P5 LINE L1 2769 5753 -398 680 271 134 46 chr9 31315219 31315548 -86547079 + MLT2B1 LTR ERVL 116 483 -37 240 59 0 0 chr9 31315548 31315582 -86547045 + (TG)n Simple_repeat Simple_repeat 2 35 0 680 271 134 46 chr9 31315582 31315624 -86547003 + MLT2B1 LTR ERVL 483 520 0 2200 119 19 24 chr9 31316073 31316450 -86546177 + THE1C LTR MaLR 1 375 0 674 232 109 85 chr9 31316735 31317106 -86545521 + MER41B LTR ERV1 97 365 -113 498 279 11 37 chr9 31317098 31317288 -86545339 + MER66B LTR ERV1 293 477 -9 * 1978 160 13 16 chr9 31317378 31317754 -86544873 - THE1C LTR MaLR 0 375 1 498 269 82 22 chr9 31318075 31318257 -86544370 - MIR SINE MIR -68 194 2 26 93 0 0 chr9 31318760 31318835 -86543792 + AT_rich Low_complexity Low_complexity 1 75 0 1188 201 93 0 chr9 31319357 31319616 -86543011 + AluJb SINE Alu 2 284 -18 38 0 0 0 chr9 31319652 31319690 -86542937 + AT_rich Low_complexity Low_complexity 1 38 0 291 333 27 9 chr9 31320278 31320389 -86542238 - L2 LINE L2 -7 3306 3194 209 184 0 0 chr9 31320690 31320728 -86541899 - L2 LINE L2 -8 3305 3268 33 25 0 0 chr9 31321010 31321050 -86541577 + AT_rich Low_complexity Low_complexity 1 40 0 255 346 24 47 chr9 31321170 31321297 -86541330 - MER5A DNA MER1_type -25 164 41 3522 136 2 4 chr9 31321546 31322074 -86540553 + MER1A DNA MER1_type 1 527 0 538 305 40 35 chr9 31322360 31322560 -86540067 + MER63A DNA MER1_type 8 208 -2 279 376 47 7 chr9 31324434 31324583 -86538044 - MIR SINE MIR -87 175 21 12454 179 57 16 chr9 31326206 31326563 -86536064 - L1M4 LINE L1 -1108 6457 6116 1865 159 0 3 chr9 31326563 31326881 -86535746 - AluSx SINE Alu 0 312 3 12454 179 57 16 chr9 31326881 31329741 -86532886 - L1M4 LINE L1 -1449 6116 3102 657 251 63 31 chr9 31329743 31330030 -86532597 + L1M4 LINE L1 2429 2724 -3422 308 271 8 0 chr9 31330052 31330170 -86532457 + L1M4 LINE L1 2782 2900 -3246 357 198 188 10 chr9 31330320 31330416 -86532211 - LTR25 LTR ERV1 -260 534 422 483 190 58 0 chr9 31330576 31330683 -86531944 - MER61E LTR ERV1 -473 96 1 1353 255 31 12 chr9 31330685 31331104 -86531523 - L1M4 LINE L1 -3467 2679 2253 27 0 0 0 chr9 31331907 31331934 -86530693 + AT_rich Low_complexity Low_complexity 1 27 0 22 35 0 0 chr9 31332599 31332628 -86529999 + AT_rich Low_complexity Low_complexity 1 29 0 315 0 0 0 chr9 31332723 31332758 -86529869 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 1535 197 118 14 chr9 31333126 31333543 -86529084 + MLT1C LTR MaLR 6 465 -2 32 26 0 0 chr9 31334740 31334779 -86527848 + AT_rich Low_complexity Low_complexity 1 39 0 777 259 114 102 chr9 31334842 31335341 -86527286 - L1ME3A LINE L1 -27 6143 5639 380 253 79 33 chr9 31335332 31335573 -86527054 - L1MEc LINE L1 -3784 3157 2906 * 444 364 117 0 chr9 31335886 31336238 -86526389 - L1MEc LINE L1 -4576 2546 2154 4166 151 39 18 chr9 31336565 31337334 -86525293 - LTR1 LTR ERV1 0 785 1 324 270 31 86 chr9 31338333 31338418 -86524209 - MLT1J1 LTR MaLR -292 154 81 2030 113 0 86 chr9 31338418 31338754 -86523873 + AluSp SINE Alu 1 307 -6 324 270 31 86 chr9 31338754 31338831 -86523796 - MLT1J1 LTR MaLR -365 81 1 42 20 0 0 chr9 31339077 31339126 -86523501 + AT_rich Low_complexity Low_complexity 1 49 0 26 0 0 0 chr9 31339579 31339605 -86523022 + AT_rich Low_complexity Low_complexity 1 26 0 259 270 95 47 chr9 31340473 31340621 -86522006 - L1MEc LINE L1 -6250 173 19 5035 167 34 19 chr9 31340919 31341394 -86521233 - L1MA8 LINE L1 0 6291 5824 330 26 0 0 chr9 31341394 31341433 -86521194 + (TG)n Simple_repeat Simple_repeat 2 40 0 5035 167 34 19 chr9 31341433 31342235 -86520392 - L1MA8 LINE L1 -467 5824 4992 3654 149 48 4 chr9 31342228 31342239 -86520388 + L1 LINE L1 4057 4066 -2080 * 6649 73 8 22 chr9 31342239 31343634 -86518993 - L1PA6 LINE L1 0 6154 4773 3654 149 48 4 chr9 31343634 31344314 -86518313 + L1PA6 LINE L1 4066 4778 -1368 1535 230 22 10 chr9 31344496 31344961 -86517666 - MER101B LTR ERV1 -57 417 3 321 360 40 25 chr9 31345261 31345536 -86517091 + MLT1H LTR MaLR 1 279 -270 189 74 0 0 chr9 31346850 31346877 -86515750 + (TTG)n Simple_repeat Simple_repeat 1 27 0 1983 42 0 0 chr9 31347612 31347852 -86514775 + L1PA3 LINE L1 5913 6152 -3 42 36 0 0 chr9 31348314 31348370 -86514257 + AT_rich Low_complexity Low_complexity 1 56 0 32 75 0 0 chr9 31349267 31349334 -86513293 + AT_rich Low_complexity Low_complexity 1 67 0 212 364 58 8 chr9 31350007 31350128 -86512499 + MIR SINE MIR 13 139 -123 1721 167 16 16 chr9 31351218 31351529 -86511098 + AluJb SINE Alu 1 311 -1 303 265 60 43 chr9 31351835 31351952 -86510675 - L2 LINE L2 0 3272 3154 283 366 142 41 chr9 31352167 31353501 -86509126 - L2 LINE L2 -462 2852 1384 201 350 39 10 chr9 31353669 31353772 -86508855 + MIR SINE MIR 41 146 -62 462 218 10 0 chr9 31354909 31355010 -86507617 - U13 snRNA snRNA -2 102 1 1387 244 16 16 chr9 31355820 31356184 -86506443 + MLT1A1 LTR MaLR 2 365 0 22 35 0 0 chr9 31357053 31357082 -86505545 + AT_rich Low_complexity Low_complexity 1 29 0 1761 223 12 0 chr9 31357659 31358005 -86504622 - MLT1-int LTR MaLR -513 858 509 296 179 30 0 chr9 31358006 31358073 -86504554 + CT-rich Low_complexity Low_complexity 4 72 0 1841 235 38 30 chr9 31358073 31358338 -86504289 - MLT1-int LTR MaLR -838 533 272 2403 65 7 0 chr9 31358338 31358646 -86503981 - AluY SINE Alu -1 310 1 1841 235 38 30 chr9 31358646 31358908 -86503719 - MLT1-int LTR MaLR -1099 272 2 1620 201 41 46 chr9 31358910 31359059 -86503568 - MLT2C1 LTR ERVL -1 396 248 4178 130 42 3 chr9 31359059 31359745 -86502882 - L1PA15 LINE L1 -2 6163 5451 1620 201 41 46 chr9 31359745 31359983 -86502644 - MLT2C1 LTR ERVL -149 248 11 2401 264 22 39 chr9 31359993 31360811 -86501816 - LOR1-int LTR ERV1 -803 4133 3330 1953 154 0 0 chr9 31361009 31361307 -86501320 - AluSx SINE Alu -14 298 1 282 136 29 146 chr9 31361705 31361808 -86500819 - LOR1-int LTR ERV1 -1819 3117 3027 4695 53 2 2 chr9 31362190 31362807 -86499820 + L1P LINE L1 4777 5393 -753 7213 50 1 3 chr9 31362922 31364218 -86498409 + L1PA6 LINE L1 4860 6153 -1 1894 157 0 19 chr9 31364391 31364703 -86497924 - AluSx SINE Alu -6 306 1 264 212 53 82 chr9 31364751 31364921 -86497706 - LOR1-int LTR ERV1 -3782 4338 4174 2227 165 25 16 chr9 31365199 31365647 -86496980 + L1MB3 LINE L1 5730 6181 -2 47 0 0 0 chr9 31365657 31365704 -86496923 + AT_rich Low_complexity Low_complexity 1 47 0 1211 224 74 20 chr9 31365743 31366095 -86496532 - LTR25 LTR ERV1 -10 784 414 290 188 141 0 chr9 31366065 31366129 -86496498 - MER51A LTR ERV1 -354 280 208 * 518 131 12 0 chr9 31366300 31366384 -86496243 - MER61E LTR ERV1 -484 85 1 234 0 0 0 chr9 31367200 31367226 -86495401 + (TTTTA)n Simple_repeat Simple_repeat 3 28 0 2446 130 57 4 chr9 31367226 31367631 -86494996 - L1PA10 LINE L1 -20 6148 5725 853 238 84 0 chr9 31367869 31368096 -86494531 - ORSL DNA AcHobo 0 275 30 332 267 113 35 chr9 31368214 31368619 -86494008 + MLT1J2 LTR MaLR 15 444 -2 396 0 0 0 chr9 31368841 31368885 -86493742 + (CA)n Simple_repeat Simple_repeat 2 45 0 25 65 0 0 chr9 31369073 31369119 -86493508 + AT_rich Low_complexity Low_complexity 1 46 0 33 80 0 0 chr9 31371477 31371552 -86491075 + AT_rich Low_complexity Low_complexity 1 75 0 1209 172 62 41 chr9 31371762 31372052 -86490575 - L1MB5 LINE L1 -8 6166 5871 21 36 0 0 chr9 31372800 31372828 -86489799 + AT_rich Low_complexity Low_complexity 1 28 0 24 67 0 0 chr9 31372933 31372978 -86489649 + AT_rich Low_complexity Low_complexity 1 45 0 270 311 90 54 chr9 31374022 31374189 -86488438 + MLT1J LTR MaLR 106 278 -233 250 270 40 0 chr9 31374563 31374637 -86487990 + MIR SINE MIR 78 154 -108 248 146 24 0 chr9 31375040 31375079 -86487548 - MLT1B LTR MaLR -2 388 349 1123 177 26 5 chr9 31375079 31375300 -86487327 + LTR18B LTR ERVL 1 259 -98 876 166 67 36 chr9 31375377 31375600 -86487027 + LTR18B LTR ERVL 385 614 0 1405 218 3 31 chr9 31375607 31375928 -86486699 + HERVL18 LTR ERVL 2 313 -5734 1404 218 7 0 chr9 31375902 31376173 -86486454 + HERVL18 LTR ERVL 492 764 -5283 * 512 158 0 11 chr9 31376182 31376277 -86486350 + HERVL18 LTR ERVL 874 967 -5080 * 1135 143 14 13 chr9 31376269 31376616 -86486011 + HERVL18 LTR ERVL 1399 1810 -4237 1117 113 118 2 chr9 31376615 31376848 -86485779 + HERVL18 LTR ERVL 2119 2436 -3611 * 2946 163 11 14 chr9 31376847 31377660 -86484967 + HERVL18 LTR ERVL 2725 3573 -2474 527 135 79 11 chr9 31377668 31377757 -86484870 + HERVL18 LTR ERVL 4394 4488 -1559 297 220 0 0 chr9 31377757 31377807 -86484820 + HERVL18 LTR ERVL 5209 5258 -789 1276 208 267 16 chr9 31378056 31378547 -86484080 + LTR18B LTR ERVL 1 614 0 1001 242 30 83 chr9 31378547 31378916 -86483711 - MLT1B LTR MaLR -36 354 6 2035 250 73 31 chr9 31378927 31379516 -86483111 + MLT1E1 LTR MaLR 41 654 0 1427 203 16 23 chr9 31380772 31381077 -86481550 - AluJb SINE Alu -7 305 3 1372 23 23 0 chr9 31382523 31382679 -86479948 + (TTTC)n Simple_repeat Simple_repeat 1 337 0 1372 23 23 0 chr9 31382679 31382853 -86479774 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 1639 186 33 21 chr9 31384301 31384358 -86478269 - MER7A DNA MER2_type -2692 346 291 2206 129 14 32 chr9 31384358 31384729 -86477898 - THE1B LTR MaLR 0 364 1 1639 186 33 21 chr9 31384729 31385005 -86477622 - MER7A DNA MER2_type -2747 291 11 269 250 0 0 chr9 31385004 31385056 -86477571 - MER7A DNA MER2_type -295 53 2 * 23 0 0 0 chr9 31385070 31385093 -86477534 + AT_rich Low_complexity Low_complexity 1 23 0 240 256 120 26 chr9 31385762 31385879 -86476748 + LTR16C LTR ERVL 279 406 -85 309 267 44 100 chr9 31386277 31386457 -86476170 - L1MEd LINE L1 -5031 1088 919 1434 199 32 71 chr9 31386689 31387152 -86475475 - LTR56 LTR ERV1 0 445 1 23 0 0 0 chr9 31387774 31387797 -86474830 + AT_rich Low_complexity Low_complexity 1 23 0 651 252 93 11 chr9 31388764 31389042 -86473585 - L1ME2 LINE L1 -10 6154 5854 282 343 33 50 chr9 31389156 31389337 -86473290 + L3 LINE CR1 1252 1429 -148 554 198 59 48 chr9 31389683 31389718 -86472909 + MER53 DNA DNA 1 34 -155 1457 181 29 25 chr9 31389718 31389999 -86472628 + AluJo SINE Alu 1 282 -30 603 40 0 0 chr9 31390000 31390074 -86472553 + (GGAA)n Simple_repeat Simple_repeat 4 77 0 554 198 59 48 chr9 31390074 31390223 -86472404 + MER53 DNA DNA 33 189 0 456 324 23 95 chr9 31391186 31391535 -86471092 - L2 LINE L2 -15 3298 2975 2494 37 0 0 chr9 31391625 31391925 -86470702 + L1PA5 LINE L1 5848 6147 -7 1162 268 65 3 chr9 31391973 31392309 -86470318 - MER110 LTR ERV1 -116 375 19 369 0 0 0 chr9 31392319 31392360 -86470267 + (TTA)n Simple_repeat Simple_repeat 2 42 0 641 353 32 0 chr9 31392369 31392621 -86470006 - L2 LINE L2 -340 2974 2715 233 236 18 0 chr9 31393888 31393943 -86468684 + (TATG)n Simple_repeat Simple_repeat 1 56 0 370 274 68 76 chr9 31393958 31394499 -86468128 - L1M4 LINE L1 -2172 3974 3438 22 0 0 0 chr9 31394615 31394637 -86467990 + AT_rich Low_complexity Low_complexity 1 22 0 2894 71 13 2 chr9 31394704 31395100 -86467527 - L1PA7 LINE L1 0 6154 5755 2124 117 6 26 chr9 31395100 31395443 -86467184 + L1P LINE L1 2106 2441 -3705 623 124 62 149 chr9 31395521 31395715 -86466912 + MER53 DNA DNA 2 178 -11 420 289 176 26 chr9 31395752 31396139 -86466488 - L1M4 LINE L1 -2961 3185 2741 928 94 0 0 chr9 31396179 31396296 -86466331 - AluY SINE Alu -184 127 11 369 312 73 30 chr9 31396314 31396644 -86465983 - L1M4 LINE L1 -3537 2609 2266 438 236 46 41 chr9 31396856 31397051 -86465576 - L1MC4 LINE L1 -146 7896 7701 1086 242 181 50 chr9 31397073 31397759 -86464868 + L1MC4a LINE L1 5895 6648 -1137 207 297 0 14 chr9 31397770 31397844 -86464783 + (TA)n Simple_repeat Simple_repeat 2 74 0 521 287 38 38 chr9 31398555 31398764 -86463863 - MER63A DNA MER1_type 0 210 2 1751 315 71 48 chr9 31399226 31401204 -86461423 + L1MEc LINE L1 165 2187 -4209 321 289 72 36 chr9 31401186 31401549 -86461078 + L1MEc LINE L1 2659 3034 -3181 * 2101 125 0 0 chr9 31401551 31401848 -86460779 + AluSx SINE Alu 1 297 -15 597 290 41 19 chr9 31401874 31402288 -86460339 + L1MEc LINE L1 3155 3577 -2638 209 366 71 21 chr9 31402403 31402479 -86460148 + L2 LINE L2 2049 2120 -1194 2436 55 3 6 chr9 31402479 31402791 -86459836 - AluY SINE Alu 0 311 1 209 366 71 21 chr9 31402791 31403039 -86459588 + L2 LINE L2 2120 2389 -925 358 233 26 43 chr9 31403611 31403727 -86458900 - L1M4 LINE L1 -2095 4051 3938 2254 127 94 10 chr9 31403764 31404157 -86458470 + MSTA LTR MaLR 3 428 0 396 0 0 0 chr9 31404157 31404201 -86458426 + (TG)n Simple_repeat Simple_repeat 2 45 0 277 305 0 0 chr9 31404201 31404283 -86458344 - L1M4 LINE L1 -2472 3674 3593 183 338 235 15 chr9 31404372 31404840 -86457787 - L2 LINE L2 -925 2389 1819 2198 92 3 26 chr9 31405050 31405356 -86457271 + AluSc SINE Alu 3 301 -8 229 265 96 0 chr9 31405534 31405617 -86457010 - MLT1I LTR MaLR -8 401 311 339 341 103 9 chr9 31405673 31405887 -86456740 - MLT1J2 LTR MaLR -201 249 16 802 315 108 40 chr9 31406001 31406725 -86455902 + L2 LINE L2 2532 3311 -2 31 0 0 0 chr9 31406750 31406781 -86455846 + AT_rich Low_complexity Low_complexity 1 31 0 1775 193 33 28 chr9 31407008 31407402 -86455225 - MSTD LTR MaLR 0 396 1 453 222 9 9 chr9 31407434 31407542 -86455085 - L1ME LINE L1 -478 5643 5536 358 270 62 61 chr9 31407932 31408178 -86454449 + MIR SINE MIR 15 256 -6 847 138 19 19 chr9 31410155 31410315 -86452312 - L1MA9 LINE L1 0 6312 6153 1706 158 142 16 chr9 31411043 31411423 -86451204 - MSTA LTR MaLR 0 428 1 242 312 21 59 chr9 31412551 31412737 -86449890 - HAL1b LINE L1 -697 651 473 210 269 0 64 chr9 31413119 31413260 -86449367 + T-rich Low_complexity Low_complexity 3 134 0 397 209 0 0 chr9 31416595 31416686 -86445941 - L1MB8 LINE L1 0 6178 6088 383 238 125 42 chr9 31416720 31416888 -86445739 + MLT1D LTR MaLR 324 505 0 229 324 112 42 chr9 31417031 31417290 -86445337 - L2 LINE L2 -488 2826 2550 2279 75 0 50 chr9 31418216 31418537 -86444090 - AluY SINE Alu -6 305 1 1863 168 50 19 chr9 31418597 31418961 -86443666 - THE1C LTR MaLR 0 375 1 242 0 0 0 chr9 31420566 31420595 -86442032 + HSMAR1 DNA Mariner 1258 1286 -1 547 260 58 6 chr9 31420595 31420768 -86441859 - L2 LINE L2 -32 3281 3100 231 179 0 0 chr9 31420825 31420864 -86441763 + MLT1E3 LTR MaLR 46 84 -540 427 273 159 0 chr9 31420923 31421099 -86441528 + HsTC2 DNA Tc2 341 544 -1354 22 0 0 0 chr9 31421676 31421698 -86440929 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr9 31424483 31424512 -86438115 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr9 31424608 31424632 -86437995 + AT_rich Low_complexity Low_complexity 1 24 0 25 75 0 0 chr9 31426018 31426071 -86436556 + AT_rich Low_complexity Low_complexity 1 53 0 1060 259 39 86 chr9 31426564 31426688 -86435939 + MLT1B LTR MaLR 4 132 -258 1653 186 148 13 chr9 31426688 31427065 -86435562 + MSTA LTR MaLR 1 428 0 1060 259 39 86 chr9 31427065 31427346 -86435281 + MLT1B LTR MaLR 132 390 0 227 237 0 34 chr9 31427625 31427684 -86434943 + (CATA)n Simple_repeat Simple_repeat 2 58 0 299 333 44 7 chr9 31428635 31428770 -86433857 - MIR SINE MIR 0 262 123 303 358 42 0 chr9 31429200 31429320 -86433307 + L2 LINE L2 2697 2821 -493 1813 228 72 23 chr9 31429473 31429946 -86432681 - MLT1D LTR MaLR 0 505 10 267 280 40 0 chr9 31430156 31430231 -86432396 + L2 LINE L2 3236 3313 0 3962 229 33 26 chr9 31430488 31432327 -86430300 + L1MB8 LINE L1 4334 6177 -1 823 304 27 69 chr9 31432863 31433313 -86429314 - LTR16A LTR ERVL -5 445 15 342 295 81 7 chr9 31433447 31433641 -86428986 - L1M4c LINE L1 -4836 1548 1345 246 105 0 0 chr9 31434218 31434256 -86428371 + (T)n Simple_repeat Simple_repeat 1 38 0 255 309 59 29 chr9 31434970 31435106 -86427521 + LTR67 LTR ERVL 334 473 -84 261 260 0 0 chr9 31435491 31435595 -86427032 + (TA)n Simple_repeat Simple_repeat 1 104 0 225 0 0 0 chr9 31435692 31435717 -86426910 + (A)n Simple_repeat Simple_repeat 1 25 0 12554 186 28 7 chr9 31435934 31439659 -86422968 - L1MA3 LINE L1 0 7724 3931 234 288 55 0 chr9 31439727 31439800 -86422827 + L2 LINE L2 3237 3313 0 6548 206 180 57 chr9 31440003 31441874 -86420753 - L1MA3 LINE L1 -5443 2122 22 183 268 81 106 chr9 31442916 31443039 -86419588 + L2 LINE L2 3175 3294 -19 185 273 0 0 chr9 31443310 31443354 -86419273 - MIR3 SINE MIR -48 160 117 32 57 0 0 chr9 31443656 31443709 -86418918 + AT_rich Low_complexity Low_complexity 1 53 0 26 0 0 0 chr9 31443765 31443791 -86418836 + AT_rich Low_complexity Low_complexity 1 26 0 1605 330 105 20 chr9 31443895 31445229 -86417398 - L2 LINE L2 -1 3312 1870 25 51 0 0 chr9 31445286 31445325 -86417302 + AT_rich Low_complexity Low_complexity 1 39 0 273 271 71 57 chr9 31446716 31446856 -86415771 + MLT1L LTR MaLR 5 146 -469 21 0 0 0 chr9 31447044 31447065 -86415562 + AT_rich Low_complexity Low_complexity 1 21 0 293 206 88 0 chr9 31447530 31447598 -86415029 - MER103 DNA DNA -42 124 51 1377 288 49 10 chr9 31447677 31448087 -86414540 - MLT1F1 LTR MaLR -139 428 3 2361 76 0 0 chr9 31448783 31449084 -86413543 - AluY SINE Alu -10 301 1 219 69 0 0 chr9 31449991 31450020 -86412607 + (TA)n Simple_repeat Simple_repeat 2 30 0 446 267 30 23 chr9 31450020 31450151 -86412476 - MLT1F1 LTR MaLR -322 245 114 294 250 10 21 chr9 31450160 31450256 -86412371 + (TA)n Simple_repeat Simple_repeat 1 95 0 8348 64 22 0 chr9 31450777 31451899 -86410728 - L1P LINE L1 -1188 4958 3812 631 330 104 40 chr9 31451952 31452573 -86410054 + L2 LINE L2 2658 3311 -2 1029 205 147 23 chr9 31453414 31453721 -86408906 + MER2 DNA MER2_type 1 345 0 22 0 0 0 chr9 31454187 31454209 -86408418 + AT_rich Low_complexity Low_complexity 1 22 0 493 126 11 42 chr9 31454870 31454965 -86407662 - L1PA16 LINE L1 -2 6164 6073 735 283 67 82 chr9 31454967 31455960 -86406667 - LTR28 LTR ERV1 0 1755 1 29787 130 21 3 chr9 31455960 31460373 -86402254 - LTR28-int LTR ERV1 0 7091 2603 250 307 60 67 chr9 31460611 31460761 -86401866 - MIR SINE MIR -94 168 20 2747 13 0 0 chr9 31463529 31463839 -86398788 - L1P1 LINE L1 -349 5806 5497 962 34 0 0 chr9 31463839 31463955 -86398672 + L1PA2 LINE L1 6037 6153 -2 33 25 0 0 chr9 31463982 31464022 -86398605 + AT_rich Low_complexity Low_complexity 1 40 0 1123 261 106 55 chr9 31464349 31464692 -86397935 + L1MEc LINE L1 241 565 -6042 285 75 0 0 chr9 31464692 31464732 -86397895 + (TG)n Simple_repeat Simple_repeat 1 40 0 186 43 0 0 chr9 31464731 31464754 -86397873 + (GA)n Simple_repeat Simple_repeat 1 23 0 * 1123 261 106 55 chr9 31464732 31464917 -86397710 + L1MEc LINE L1 565 784 -5823 405 0 0 0 chr9 31464917 31464962 -86397665 + (CA)n Simple_repeat Simple_repeat 2 46 0 1123 261 106 55 chr9 31464962 31465049 -86397578 + L1MEc LINE L1 784 865 -5742 565 274 216 28 chr9 31465053 31465410 -86397217 + MLT2F LTR ERVL 34 457 -206 306 0 0 0 chr9 31465513 31465547 -86397080 + (TG)n Simple_repeat Simple_repeat 2 35 0 540 223 6 13 chr9 31465607 31465764 -86396863 + L1MEc LINE L1 898 1053 -5554 893 246 137 49 chr9 31465802 31466212 -86396415 + L1MD2 LINE L1 5912 6357 -2 302 216 33 93 chr9 31466396 31466594 -86396033 + L1MEc LINE L1 1809 2095 -4455 2762 76 3 3 chr9 31468221 31468576 -86394051 - THE1A LTR MaLR 0 355 1 10744 114 14 0 chr9 31468576 31470135 -86392492 - THE1A-int LTR MaLR 0 1580 1 2539 107 3 0 chr9 31470135 31470489 -86392138 - THE1A LTR MaLR 0 355 1 22 0 0 0 chr9 31471344 31471366 -86391261 + AT_rich Low_complexity Low_complexity 1 22 0 2025 208 60 40 chr9 31471480 31471980 -86390647 + MER67D LTR ERV1 1 510 -4 22 0 0 0 chr9 31473108 31473130 -86389497 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr9 31473773 31473799 -86388828 + AT_rich Low_complexity Low_complexity 1 26 0 2067 202 2 2 chr9 31474173 31474569 -86388058 - L1PA15 LINE L1 -3 6162 5767 186 300 18 100 chr9 31474613 31474723 -86387904 - L2 LINE L2 -317 2955 2855 189 107 0 0 chr9 31474731 31474759 -86387868 + (CAGAGA)n Simple_repeat Simple_repeat 2 29 0 571 231 148 35 chr9 31474970 31475173 -86387454 + ERVL LTR ERVL 2 227 -5537 * 4403 108 13 149 chr9 31475171 31476755 -86385872 + pTR5 LTR ERV1 741 2606 0 740 250 47 42 chr9 31476807 31477043 -86385584 + ERVL LTR ERVL 299 535 -5229 257 81 27 0 chr9 31477043 31477080 -86385547 + L1PA12 LINE L1 4525 4562 -1584 804 93 0 0 chr9 31477081 31477188 -86385439 + AluY SINE Alu 187 293 -18 5381 118 47 5 chr9 31477190 31477379 -86385248 + L1PA12 LINE L1 4549 4729 -1439 2695 171 68 20 chr9 31477379 31477940 -86384687 - LTR4 LTR ERV1 0 588 1 5381 118 47 5 chr9 31477940 31478456 -86384171 + L1PA12 LINE L1 4729 6164 -4 5459 118 47 5 chr9 31478456 31479329 -86383298 + L1PA12 LINE L1 5255 6164 -4 18546 210 46 16 chr9 31479347 31483131 -86379496 + ERVL LTR ERVL 530 4202 -1562 2000 128 24 0 chr9 31483131 31483421 -86379206 - AluSq SINE Alu -14 299 3 1618 119 116 11 chr9 31483423 31483691 -86378936 - AluSx SINE Alu -16 296 1 18546 210 46 16 chr9 31483691 31483797 -86378830 + ERVL LTR ERVL 4202 4537 -1227 1001 306 70 44 chr9 31484243 31484694 -86377933 + MLT1E LTR MaLR 4 475 -118 1799 130 68 40 chr9 31484694 31485048 -86377579 + THE1B LTR MaLR 1 364 0 1001 306 70 44 chr9 31485048 31485168 -86377459 + MLT1E LTR MaLR 475 590 -3 1194 251 53 29 chr9 31485301 31485675 -86376952 + L1ME1 LINE L1 5779 6161 -5 305 304 9 43 chr9 31485896 31486011 -86376616 - MLT1J2 LTR MaLR -339 111 1 270 132 0 0 chr9 31486247 31486300 -86376327 + (TA)n Simple_repeat Simple_repeat 1 53 0 378 0 0 0 chr9 31486734 31486776 -86375851 + (TG)n Simple_repeat Simple_repeat 2 43 0 1707 214 52 31 chr9 31487122 31487538 -86375089 - MSTA LTR MaLR 0 408 1 7859 197 40 12 chr9 31487538 31489144 -86373483 - MSTA-int LTR MaLR 0 1651 1 2069 179 65 2 chr9 31489144 31489547 -86373080 - MSTA LTR MaLR 0 428 1 2460 253 90 41 chr9 31490507 31493035 -86369592 - L1MCb LINE L1 -3082 3482 704 8863 170 28 33 chr9 31493052 31494258 -86368369 + Tigger3(Golem) DNA MER2_type 14 1225 -1804 1340 238 21 7 chr9 31494258 31494540 -86368087 + AluJo SINE Alu 1 286 -26 8863 170 28 33 chr9 31494540 31494561 -86368066 + Tigger3(Golem) DNA MER2_type 1225 1245 -1784 1576 208 16 13 chr9 31494561 31494869 -86367758 - AluJb SINE Alu -1 311 3 8863 170 28 33 chr9 31494869 31494880 -86367747 + Tigger3(Golem) DNA MER2_type 1245 1255 -1774 282 73 0 0 chr9 31494880 31494921 -86367706 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 8863 170 28 33 chr9 31494921 31495394 -86367233 + Tigger3(Golem) DNA MER2_type 1255 1718 -1311 325 192 0 0 chr9 31495397 31495449 -86367178 + Tigger3(Golem) DNA MER2_type 2986 3037 0 567 253 24 91 chr9 31495491 31495787 -86366840 - L1MCb LINE L1 -5436 609 334 1107 234 117 45 chr9 31495819 31496221 -86366406 + MSTB2 LTR MaLR 23 453 -4 809 274 75 60 chr9 31496227 31496559 -86366068 - L1MCb LINE L1 -5765 280 5 595 361 95 27 chr9 31496561 31497137 -86365490 - L2 LINE L2 -201 3071 2464 26 82 0 0 chr9 31497944 31498005 -86364622 + AT_rich Low_complexity Low_complexity 1 61 0 548 308 69 12 chr9 31498010 31498257 -86364370 - MIR SINE MIR 0 262 2 232 219 254 18 chr9 31498750 31498864 -86363763 - MER5A DNA MER1_type -2 187 47 21 0 0 0 chr9 31500453 31500474 -86362153 + AT_rich Low_complexity Low_complexity 1 21 0 204 277 0 0 chr9 31501157 31501240 -86361387 + (CATATA)n Simple_repeat Simple_repeat 4 86 0 26 0 0 0 chr9 31501297 31501323 -86361304 + AT_rich Low_complexity Low_complexity 1 26 0 276 303 76 95 chr9 31502889 31503153 -86359474 - MIR SINE MIR -3 259 1 248 261 11 0 chr9 31503295 31503387 -86359240 + (TATATG)n Simple_repeat Simple_repeat 3 95 0 2547 196 15 67 chr9 31503433 31504091 -86358536 - L1MB5 LINE L1 -7 6167 5544 1757 253 50 14 chr9 31504097 31504752 -86357875 - L1MB5 LINE L1 -743 5403 4744 328 322 40 66 chr9 31507038 31507311 -86355316 + L1MDa LINE L1 19 284 -6256 742 170 7 7 chr9 31507340 31507493 -86355134 + GA-rich Low_complexity Low_complexity 2 154 0 30478 105 11 13 chr9 31507605 31509245 -86353382 + L1PA7 LINE L1 688 2330 -3824 184 29 29 29 chr9 31509245 31509279 -86353348 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 30478 105 11 13 chr9 31509279 31512248 -86350379 + L1PA7 LINE L1 2330 5295 -859 2444 76 0 10 chr9 31512248 31512550 -86350077 + AluY SINE Alu 1 299 -12 30478 105 11 13 chr9 31512550 31513409 -86349218 + L1PA7 LINE L1 5295 6154 0 746 329 32 7 chr9 31513410 31513693 -86348934 + L2 LINE L2 1776 2065 -1249 262 322 0 0 chr9 31513769 31513856 -86348771 - L1ME LINE L1 -302 5819 5733 2578 107 6 3 chr9 31514382 31514745 -86347882 - THE1B LTR MaLR 0 364 1 23 0 0 0 chr9 31516238 31516261 -86346366 + AT_rich Low_complexity Low_complexity 1 23 0 546 16 0 0 chr9 31516899 31516962 -86345665 + (TA)n Simple_repeat Simple_repeat 1 63 0 21 0 0 0 chr9 31517636 31517657 -86344970 + AT_rich Low_complexity Low_complexity 1 21 0 6592 204 40 6 chr9 31517695 31518978 -86343649 + L1M1 LINE L1 9 1335 -6230 4484 106 20 42 chr9 31518986 31519753 -86342874 + L1MA2 LINE L1 5477 6226 -78 1407 65 107 9 chr9 31519754 31519969 -86342658 + L1MA2 LINE L1 6069 6304 0 1615 174 68 0 chr9 31521963 31522244 -86340383 + AluJb SINE Alu 1 300 -12 1565 207 52 3 chr9 31523021 31523364 -86339263 - MLT1A1 LTR MaLR -2 363 4 199 54 54 0 chr9 31524371 31524408 -86338219 + (CA)n Simple_repeat Simple_repeat 1 39 0 1567 198 71 40 chr9 31524563 31524942 -86337685 + MSTD LTR MaLR 6 396 0 2232 108 7 0 chr9 31525250 31525546 -86337081 + AluSq SINE Alu 1 298 -15 2661 166 22 2 chr9 31525643 31526143 -86336484 - L1MA6 LINE L1 -4 6296 5787 1842 290 56 59 chr9 31526153 31526995 -86335632 - L1M1 LINE L1 -6654 911 73 2162 153 11 24 chr9 31528552 31528932 -86333695 + THE1C LTR MaLR 1 375 0 7756 129 10 73 chr9 31528932 31530605 -86332022 + THE1C-int LTR MaLR 1 1580 0 2081 158 13 16 chr9 31530607 31530981 -86331646 + THE1C LTR MaLR 3 375 0 198 0 0 0 chr9 31532472 31532494 -86330133 + (CA)n Simple_repeat Simple_repeat 2 23 0 2078 127 0 13 chr9 31532825 31533140 -86329487 - AluSx SINE Alu -1 311 1 821 282 127 42 chr9 31534248 31534776 -86327851 + MER90 LTR ERV1 1 573 -2 199 325 83 45 chr9 31534920 31535077 -86327550 - L2 LINE L2 -607 2707 2545 297 346 0 0 chr9 31535184 31535291 -86327336 - L2 LINE L2 -1008 2306 2200 2233 244 15 31 chr9 31536121 31536801 -86325826 + L1M4 LINE L1 4491 5159 -987 1996 112 22 47 chr9 31537072 31537393 -86325234 - AluSq SINE Alu 0 313 1 308 296 0 0 chr9 31537660 31537731 -86324896 + MER5A DNA MER1_type 55 125 -64 369 345 49 31 chr9 31538368 31538655 -86323972 + MLT1J LTR MaLR 16 307 -204 996 315 30 36 chr9 31539077 31539759 -86322868 - L1M2 LINE L1 -6425 1160 9 375 297 65 39 chr9 31539906 31540135 -86322492 + HAL1 LINE L1 95 329 -2178 429 278 94 13 chr9 31540267 31540501 -86322126 + HAL1 LINE L1 1088 1340 -1167 1366 299 108 25 chr9 31540533 31541449 -86321178 + HAL1 LINE L1 1487 2478 -29 923 294 54 11 chr9 31542257 31542536 -86320091 + MER45C DNA AcHobo 8 298 -655 30 0 0 0 chr9 31543762 31543792 -86318835 + AT_rich Low_complexity Low_complexity 1 30 0 2418 126 6 6 chr9 31543934 31544298 -86318329 + THE1B LTR MaLR 1 364 0 407 253 123 25 chr9 31544562 31544724 -86317903 + MIR SINE MIR 84 261 -1 264 333 21 0 chr9 31545658 31545802 -86316825 - HAL1b LINE L1 -770 578 432 586 119 48 6 chr9 31546010 31546347 -86316280 + (TA)n Simple_repeat Simple_repeat 1 351 0 1891 127 14 7 chr9 31546347 31546630 -86315997 - AluSg SINE Alu -25 285 1 314 246 0 10 chr9 31546662 31546760 -86315867 + L1MC4 LINE L1 7901 8015 -27 25 31 0 0 chr9 31546763 31546795 -86315832 + AT_rich Low_complexity Low_complexity 1 32 0 2033 125 3 13 chr9 31547390 31547694 -86314933 + AluSg SINE Alu 1 301 -9 183 42 0 0 chr9 31547980 31548004 -86314623 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 203 195 24 0 chr9 31548496 31548537 -86314090 + (TATG)n Simple_repeat Simple_repeat 2 43 0 189 300 17 17 chr9 31548706 31548766 -86313861 + MIR SINE MIR 16 75 -133 1283 315 32 99 chr9 31548790 31549717 -86312910 + L2 LINE L2 418 1282 -2032 367 258 24 32 chr9 31549811 31549935 -86312692 + L2 LINE L2 2278 2400 -914 857 301 70 55 chr9 31549978 31550433 -86312194 + L2 LINE L2 2852 3313 0 237 326 0 0 chr9 31550443 31550538 -86312089 + L1MCb LINE L1 790 884 -5161 582 220 0 0 chr9 31550538 31550656 -86311971 + L1PB4 LINE L1 6028 6145 -11 2532 140 24 7 chr9 31550779 31551200 -86311427 + MSTA LTR MaLR 1 428 0 341 294 82 27 chr9 31552931 31553077 -86309550 + MIR SINE MIR 91 244 -18 438 139 100 52 chr9 31553251 31553380 -86309247 + L1MA8 LINE L1 6070 6197 -94 405 127 14 0 chr9 31553380 31553449 -86309178 + L1MA9 LINE L1 6241 6312 0 438 139 100 52 chr9 31553449 31553469 -86309158 + L1MA8 LINE L1 6197 6215 -76 564 288 124 8 chr9 31553888 31554138 -86308489 - LTR16A1 LTR ERVL 0 457 179 479 292 116 13 chr9 31554804 31555201 -86307426 + MLT1L LTR MaLR 131 609 -6 740 288 0 41 chr9 31555232 31555451 -86307176 + MER63A DNA MER1_type 1 210 0 376 299 28 14 chr9 31555454 31555598 -86307029 - LTR67 LTR ERVL -10 547 402 2589 85 98 5 chr9 31555673 31556083 -86306544 + LTR7 LTR ERV1 1 448 -2 36 77 0 0 chr9 31556553 31556631 -86305996 + AT_rich Low_complexity Low_complexity 1 78 0 302 321 36 29 chr9 31556869 31557009 -86305618 + L1MB7 LINE L1 4067 4207 -1939 338 194 10 51 chr9 31557175 31557273 -86305354 + L1MB7 LINE L1 4178 4271 -1875 * 3101 213 31 39 chr9 31557267 31558043 -86304584 + L1MA9 LINE L1 5505 6274 -38 23 0 0 0 chr9 31558043 31558066 -86304561 + AT_rich Low_complexity Low_complexity 1 23 0 1876 250 58 31 chr9 31558100 31558843 -86303784 + L1MB7 LINE L1 4272 5034 -1112 245 95 0 81 chr9 31558911 31558985 -86303642 + (TA)n Simple_repeat Simple_repeat 1 68 0 230 288 31 19 chr9 31558931 31559040 -86303587 + (TATAG)n Simple_repeat Simple_repeat 4 117 -48 * 4061 35 17 0 chr9 31559040 31559522 -86303105 + LTR2B LTR ERV1 1 490 0 230 288 31 19 chr9 31559522 31559572 -86303055 + (TATAG)n Simple_repeat Simple_repeat 117 165 0 299 174 10 0 chr9 31559573 31559643 -86302984 - L1ME LINE L1 -485 5679 5605 2120 251 58 51 chr9 31559674 31559861 -86302766 + L1MB7 LINE L1 5088 5272 -912 408 20 0 0 chr9 31559861 31559910 -86302717 + (TTA)n Simple_repeat Simple_repeat 1 49 0 2120 251 58 51 chr9 31559910 31559940 -86302687 + L1MB7 LINE L1 5272 5300 -884 2561 62 0 12 chr9 31559940 31560276 -86302351 - L1PA7 LINE L1 0 6154 5823 2120 251 58 51 chr9 31560276 31560340 -86302287 + L1MB7 LINE L1 5300 5362 -822 1484 219 7 3 chr9 31560340 31560641 -86301986 + AluJo SINE Alu 5 306 -6 2120 251 58 51 chr9 31560641 31561416 -86301211 + L1MB7 LINE L1 5362 6174 -10 271 407 16 41 chr9 31562059 31562302 -86300325 + L2 LINE L2 2986 3222 -50 23 0 0 0 chr9 31563391 31563414 -86299213 + AT_rich Low_complexity Low_complexity 1 23 0 379 329 33 33 chr9 31563425 31563635 -86298992 + L1M4 LINE L1 3608 3817 -2329 32 0 0 0 chr9 31563965 31563997 -86298630 + AT_rich Low_complexity Low_complexity 1 32 0 1603 126 0 69 chr9 31564627 31564904 -86297723 - AluJo SINE Alu -16 296 39 226 175 0 32 chr9 31565052 31565115 -86297512 + CT-rich Low_complexity Low_complexity 1 61 0 266 169 15 0 chr9 31565133 31565198 -86297429 + (CA)n Simple_repeat Simple_repeat 2 67 0 241 271 35 12 chr9 31566012 31566097 -86296530 - L1MC4 LINE L1 -1342 6700 6614 229 330 51 17 chr9 31566102 31566220 -86296407 + L2 LINE L2 3175 3296 -17 25 51 0 0 chr9 31566225 31566264 -86296363 + AT_rich Low_complexity Low_complexity 1 39 0 24 32 0 0 chr9 31566671 31566702 -86295925 + AT_rich Low_complexity Low_complexity 1 31 0 23 33 0 0 chr9 31566919 31566949 -86295678 + AT_rich Low_complexity Low_complexity 1 30 0 3872 169 34 14 chr9 31567021 31567786 -86294841 + L1MA10 LINE L1 5553 6332 -2 25 0 0 0 chr9 31568036 31568061 -86294566 + AT_rich Low_complexity Low_complexity 1 25 0 406 321 92 5 chr9 31568580 31568764 -86293863 + MIR SINE MIR 10 209 -53 485 254 94 50 chr9 31568972 31569173 -86293454 + L1ME1 LINE L1 5909 6082 -84 218 304 185 0 chr9 31569622 31569757 -86292870 + MIR3 SINE MIR 9 168 -40 1821 160 20 23 chr9 31570090 31570434 -86292193 + MER2 DNA MER2_type 2 344 0 1841 164 61 19 chr9 31571360 31571720 -86290907 - THE1C LTR MaLR 0 375 1 204 83 0 56 chr9 31571735 31571771 -86290856 + (TTTTTA)n Simple_repeat Simple_repeat 2 35 0 756 146 49 0 chr9 31572241 31572385 -86290242 - L1MB1 LINE L1 -1 6167 6017 1692 121 51 81 chr9 31572407 31572778 -86289849 + THE1C LTR MaLR 1 360 -15 1965 136 163 8 chr9 31573266 31573635 -86288992 + MSTA LTR MaLR 3 428 0 1905 142 3 0 chr9 31574413 31574702 -86287925 - AluSx SINE Alu -22 290 1 587 261 38 16 chr9 31574921 31575131 -86287496 + L1MCa LINE L1 1 192 -5853 1026 269 93 25 chr9 31575168 31575565 -86287062 + MLT1C LTR MaLR 35 458 -9 454 254 16 8 chr9 31575566 31575688 -86286939 + L1MCa LINE L1 218 340 -5705 709 264 26 10 chr9 31575900 31576093 -86286534 + L1MCa LINE L1 359 554 -5491 2110 104 17 7 chr9 31576099 31576398 -86286229 + AluSc SINE Alu 1 302 -7 1036 256 62 39 chr9 31576509 31576942 -86285685 + L1MCa LINE L1 570 1012 -5033 541 318 29 0 chr9 31576995 31577240 -86285387 - L1MCa LINE L1 -3653 2991 2740 1083 279 16 5 chr9 31577251 31577624 -86285003 + L1MCa LINE L1 2999 3375 -3269 2595 258 90 63 chr9 31577654 31578518 -86284109 + L1MCb LINE L1 4 843 -5707 441 69 0 0 chr9 31578518 31578576 -86284051 + MER41B LTR ERV1 575 632 -3 2595 258 90 63 chr9 31578576 31579293 -86283334 + L1MCb LINE L1 843 1699 -4851 431 298 85 20 chr9 31579326 31579574 -86283053 - L1M4 LINE L1 -6275 267 4 3691 110 32 0 chr9 31579576 31580113 -86282514 - MER41A LTR ERV1 0 554 1 13105 136 59 30 chr9 31580113 31583339 -86279288 - MER41A-int LTR ERV1 -2 5944 2167 823 92 144 10 chr9 31583315 31583470 -86279157 - MER41A-int LTR ERV1 -3929 2017 1503 * 4395 165 83 29 chr9 31583457 31585057 -86277570 - MER41A-int LTR ERV1 -4171 1775 3 3589 96 36 11 chr9 31585141 31585664 -86276963 - MER41A LTR ERV1 0 554 19 354 143 0 0 chr9 31585982 31586045 -86276582 + (CA)n Simple_repeat Simple_repeat 1 63 0 1898 226 64 2 chr9 31586151 31586575 -86276052 - MER82 DNA MER2_type 0 653 204 245 310 9 9 chr9 31586827 31586943 -86275684 + Tigger2 DNA MER2_type 757 1120 -1598 3512 165 9 4 chr9 31587067 31587715 -86274912 + MER50 LTR ERV1 1 711 -23 611 231 0 0 chr9 31587717 31587834 -86274793 - MER82 DNA MER2_type -527 126 10 2053 130 0 3 chr9 31587980 31588281 -86274346 + AluSg SINE Alu 1 300 -10 22 35 0 0 chr9 31589356 31589385 -86273242 + AT_rich Low_complexity Low_complexity 1 29 0 1011 301 79 70 chr9 31589612 31590269 -86272358 - MLT2F LTR ERVL 0 663 1 1101 233 8 8 chr9 31590893 31591133 -86271494 - LTR47B LTR ERVL 0 443 204 424 354 59 60 chr9 31592181 31592844 -86269783 + L2 LINE L2 1632 2293 -1021 1983 151 25 25 chr9 31592916 31593103 -86269524 + L1PA16 LINE L1 5802 5991 -175 1803 151 178 6 chr9 31593103 31593468 -86269159 - MSTA LTR MaLR 0 428 1 1983 151 25 25 chr9 31593468 31593644 -86268983 + L1PA16 LINE L1 5990 6165 -1 346 267 0 59 chr9 31595708 31595843 -86266784 - L1ME2 LINE L1 -73 6091 5965 280 322 107 27 chr9 31595837 31596203 -86266424 - L1ME LINE L1 -4885 1499 1105 * 690 306 90 29 chr9 31596190 31596828 -86265799 - L1ME LINE L1 -5113 1259 585 1981 181 67 20 chr9 31596938 31597342 -86265285 + MSTC LTR MaLR 1 423 -5 350 302 55 25 chr9 31597439 31597674 -86264953 - L1MEc LINE L1 -4762 2360 2119 1828 187 20 33 chr9 31597747 31598137 -86264490 + MLT1B LTR MaLR 4 388 -2 3054 218 66 25 chr9 31598299 31599539 -86263088 - L1MB8 LINE L1 -12 6166 4869 263 316 70 29 chr9 31599653 31599925 -86262702 - L1MEc LINE L1 -4928 1495 1213 228 337 58 0 chr9 31600520 31600606 -86262021 - L1MEc LINE L1 -5985 438 348 3081 175 61 17 chr9 31600697 31601350 -86261277 - L1MA10 LINE L1 -1 6333 5652 2556 128 12 0 chr9 31601369 31601784 -86260843 - L1MA1 LINE L1 0 6302 5883 5019 87 9 1 chr9 31602361 31603055 -86259572 - L1PA7 LINE L1 -1937 4209 3511 8151 78 7 23 chr9 31603056 31605005 -86257622 + L1PA7 LINE L1 4220 6152 -2 253 228 0 0 chr9 31605027 31605084 -86257543 - L1MA10 LINE L1 -986 5373 5317 1340 97 0 0 chr9 31605363 31605549 -86257078 - L1PA7 LINE L1 -7 6147 5962 5173 66 18 0 chr9 31605549 31606297 -86256330 + L1PA7 LINE L1 5185 5944 -210 3633 229 22 15 chr9 31606294 31607600 -86255027 - L1MA1 LINE L1 -501 5667 4360 * 745 167 8 0 chr9 31607613 31607733 -86254894 - FLAM_A SINE Alu -21 121 1 1641 207 11 11 chr9 31607734 31608091 -86254536 + MER65A LTR ERV1 62 418 -27 892 51 103 0 chr9 31608089 31608206 -86254421 - MER9 LTR ERVK -382 129 1 * 2819 251 60 43 chr9 31608208 31609375 -86253252 + MER65A-int LTR ERV1 61 1247 -3624 974 210 65 96 chr9 31609403 31609535 -86253092 + MER65A-int LTR ERV1 1516 1651 -5107 2825 7 0 0 chr9 31609535 31609845 -86252782 + AluY SINE Alu 2 311 0 974 210 65 96 chr9 31609845 31610494 -86252133 + MER65A-int LTR ERV1 1651 2436 -4322 2266 102 7 3 chr9 31610563 31610868 -86251759 - AluSc SINE Alu -1 308 3 615 171 0 55 chr9 31611082 31611228 -86251399 + MER57-int LTR ERV1 705 842 -6695 254 235 39 69 chr9 31611313 31611415 -86251212 + MER57-int LTR ERV1 841 939 -4184 32 26 0 0 chr9 31611560 31611599 -86251028 + AT_rich Low_complexity Low_complexity 1 39 0 1876 121 7 4 chr9 31611601 31611874 -86250753 + AluSx SINE Alu 1 274 -38 1870 204 16 18 chr9 31611876 31612312 -86250315 + L1PB3 LINE L1 3371 3805 -2341 1165 163 37 0 chr9 31612318 31612644 -86249983 + L1PB3 LINE L1 5100 5439 -715 6216 194 108 37 chr9 31612645 31614157 -86248470 - MER52A LTR ERV1 0 1755 61 3177 137 13 109 chr9 31614192 31614476 -86248151 + L1PB3 LINE L1 5527 5708 -446 347 89 18 0 chr9 31614476 31614532 -86248095 + (TG)n Simple_repeat Simple_repeat 2 58 0 3177 137 13 109 chr9 31614532 31614932 -86247695 + L1PB3 LINE L1 5708 6145 -9 927 187 7 93 chr9 31615064 31615215 -86247412 - L1MA1 LINE L1 -1792 4354 4235 2078 120 0 0 chr9 31615215 31615533 -86247094 + AluSx SINE Alu 1 318 0 927 187 7 93 chr9 31615533 31615658 -86246969 - L1MA1 LINE L1 -1911 4235 4101 293 111 0 22 chr9 31615656 31615701 -86246926 - L1P5 LINE L1 -433 5723 5680 * 264 30 0 0 chr9 31615872 31615905 -86246722 + (CA)n Simple_repeat Simple_repeat 2 34 0 270 56 0 0 chr9 31616138 31616174 -86246453 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2013 141 0 0 chr9 31616236 31616527 -86246100 - AluSx SINE Alu -11 301 11 1049 236 5 0 chr9 31616779 31616982 -86245645 + MER45B DNA AcHobo 4 207 -833 332 211 0 53 chr9 31616986 31617062 -86245565 + MER45B DNA AcHobo 542 613 -427 1535 284 20 36 chr9 31617856 31618405 -86244222 + MLT1F LTR MaLR 3 542 0 21 36 0 0 chr9 31618406 31618434 -86244193 + AT_rich Low_complexity Low_complexity 1 28 0 24 67 0 0 chr9 31618537 31618582 -86244045 + AT_rich Low_complexity Low_complexity 1 45 0 728 278 63 4 chr9 31618950 31619205 -86243422 + L1MCc LINE L1 206 475 -5948 * 991 271 29 20 chr9 31619204 31619547 -86243080 + L1ME1 LINE L1 5806 6151 -15 261 252 17 26 chr9 31619570 31619685 -86242942 + (TA)n Simple_repeat Simple_repeat 1 114 0 21 0 0 0 chr9 31619832 31619853 -86242774 + AT_rich Low_complexity Low_complexity 1 21 0 437 216 72 12 chr9 31619963 31620130 -86242497 + LTR50 LTR ERVL 3 177 -596 24 0 0 0 chr9 31620586 31620610 -86242017 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr9 31620859 31620894 -86241733 + AT_rich Low_complexity Low_complexity 1 35 0 585 296 138 33 chr9 31621898 31622832 -86239795 - L1MEc LINE L1 -3935 2461 1430 1015 185 0 15 chr9 31623471 31623671 -86238956 - L1PB1 LINE L1 0 6151 5955 385 291 104 32 chr9 31624504 31624724 -86237903 - MLT1I LTR MaLR -76 333 98 570 280 103 10 chr9 31625073 31625382 -86237245 - MLT1D LTR MaLR 0 505 276 185 350 62 56 chr9 31625428 31625588 -86237039 - MIR SINE MIR -13 249 89 334 259 54 27 chr9 31626971 31627118 -86235509 + L1M4 LINE L1 4557 4707 -1439 313 291 106 17 chr9 31627204 31627441 -86235186 + L1M4 LINE L1 4943 5200 -946 24 0 0 0 chr9 31627760 31627784 -86234843 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr9 31629196 31629217 -86233410 + AT_rich Low_complexity Low_complexity 1 21 0 3020 154 24 46 chr9 31629718 31630159 -86232468 - L1P4 LINE L1 -371 5795 5378 1545 212 3 7 chr9 31630159 31630452 -86232175 - AluSx SINE Alu -17 295 4 3020 154 24 46 chr9 31630452 31630912 -86231715 - L1P4 LINE L1 -788 5378 4910 275 213 0 0 chr9 31630913 31630974 -86231653 + L1P LINE L1 4501 4561 -1585 1155 202 0 4 chr9 31630976 31631219 -86231408 + L1 LINE L1 4655 4896 -1250 661 302 83 0 chr9 31631403 31631691 -86230936 - L1M4 LINE L1 -1312 4834 4523 443 297 45 22 chr9 31631694 31631916 -86230711 - L1M4 LINE L1 -1984 4162 3936 195 184 0 0 chr9 31631916 31631954 -86230673 + (TG)n Simple_repeat Simple_repeat 2 39 0 341 237 35 35 chr9 31631954 31632068 -86230559 + L1MC4 LINE L1 6588 6701 -1341 5057 185 33 43 chr9 31632068 31632400 -86230227 - L1MA9 LINE L1 -167 6214 5880 216 0 0 0 chr9 31632400 31632424 -86230203 + (TG)n Simple_repeat Simple_repeat 2 25 0 5057 185 33 43 chr9 31632424 31634170 -86228457 - L1MA9 LINE L1 -501 5880 4162 1531 246 45 57 chr9 31634185 31634562 -86228065 - L1MA9 LINE L1 -3419 2796 2463 300 27 0 0 chr9 31634562 31634599 -86228028 + (CA)n Simple_repeat Simple_repeat 2 38 0 1531 246 45 57 chr9 31634599 31634933 -86227694 - L1MA9 LINE L1 -3752 2463 2126 1477 205 17 7 chr9 31634954 31635252 -86227375 - AluJb SINE Alu -8 304 4 1107 261 19 14 chr9 31635296 31635679 -86226948 + L1M4 LINE L1 1121 1759 -4554 297 54 54 0 chr9 31635746 31635802 -86226825 + (TA)n Simple_repeat Simple_repeat 2 60 0 36 40 0 0 chr9 31635847 31635897 -86226730 + AT_rich Low_complexity Low_complexity 1 50 0 1180 298 74 29 chr9 31636081 31636661 -86225966 + L1M4 LINE L1 3573 4178 -2204 1875 133 38 0 chr9 31636682 31636975 -86225652 + AluSx SINE Alu 1 304 -8 462 275 42 47 chr9 31636975 31637168 -86225459 + L1MC1 LINE L1 18 209 -6331 1706 218 64 8 chr9 31637918 31638390 -86224237 + L1M4 LINE L1 3520 4017 -2129 407 217 127 18 chr9 31638404 31638570 -86224057 + L1M4 LINE L1 4195 4378 -1768 4834 231 47 37 chr9 31638651 31641147 -86221480 + L1MC1 LINE L1 3961 6485 -242 4776 151 20 25 chr9 31641249 31642126 -86220501 + L1PA15 LINE L1 4857 5729 -436 2529 126 87 0 chr9 31642126 31642502 -86220125 + MLT2A2 LTR ERVL 1 418 -35 420 118 0 0 chr9 31642502 31642570 -86220057 + (TA)n Simple_repeat Simple_repeat 2 69 0 2529 126 87 0 chr9 31642570 31642607 -86220020 + MLT2A2 LTR ERVL 418 450 -3 4776 151 20 25 chr9 31642607 31643040 -86219587 + L1PA15 LINE L1 5729 6163 -2 1188 260 112 49 chr9 31643086 31643464 -86219163 - L1M4 LINE L1 -3725 2919 2566 1812 164 30 3 chr9 31643464 31643768 -86218859 - AluSx SINE Alu 0 312 1 1188 260 112 49 chr9 31643768 31644501 -86218126 - L1M4 LINE L1 -4078 2566 1718 10444 212 32 15 chr9 31644536 31647965 -86214662 + L1MA7 LINE L1 2763 6248 -43 250 103 0 0 chr9 31647997 31648036 -86214591 - L1MA7 LINE L1 -42 6249 6211 254 158 73 0 chr9 31648094 31648176 -86214451 + (TA)n Simple_repeat Simple_repeat 1 88 0 46 45 0 0 chr9 31648305 31648372 -86214255 + AT_rich Low_complexity Low_complexity 1 67 0 447 263 32 21 chr9 31648372 31648562 -86214065 - L1M4 LINE L1 -5302 1240 1049 4474 249 68 37 chr9 31648636 31650306 -86212321 - L1M4 LINE L1 -4848 1694 3 6580 69 12 0 chr9 31651720 31652849 -86209778 - L1PA8 LINE L1 -1 6171 5068 306 50 0 0 chr9 31652896 31652936 -86209691 + (TA)n Simple_repeat Simple_repeat 1 40 0 392 161 0 0 chr9 31654085 31654147 -86208480 + MER93b LTR ERV1 12 73 -300 * 417 176 0 0 chr9 31654144 31654218 -86208409 - MLT1A2 LTR MaLR -295 79 6 241 371 0 21 chr9 31655505 31655602 -86207025 + MIR SINE MIR 38 132 -130 1065 70 14 7 chr9 31655621 31655763 -86206864 - AluSc SINE Alu -10 299 157 2009 243 84 20 chr9 31656118 31656907 -86205720 - L1M4 LINE L1 -2878 3268 2430 2087 260 17 11 chr9 31656925 31657448 -86205179 + L1PA13 LINE L1 2049 2574 -4981 775 165 88 18 chr9 31657461 31657631 -86204996 + L1PA13 LINE L1 5982 6163 0 4790 253 71 44 chr9 31657631 31658710 -86203917 + L1PA13 LINE L1 2359 3407 -4158 330 115 0 0 chr9 31658710 31658762 -86203865 + (TA)n Simple_repeat Simple_repeat 2 53 0 4790 253 71 44 chr9 31658762 31658785 -86203842 + L1PA13 LINE L1 3407 3428 -4137 11499 25 1 2 chr9 31658785 31660920 -86201707 - L1PA3 LINE L1 -2 6153 4021 4790 253 71 44 chr9 31660920 31661043 -86201584 + L1PA13 LINE L1 3428 3546 -4019 233 56 0 28 chr9 31661043 31661079 -86201548 + (TA)n Simple_repeat Simple_repeat 2 36 0 4790 253 71 44 chr9 31661079 31661292 -86201335 + L1PA13 LINE L1 3546 3752 -3813 180 0 0 0 chr9 31661292 31661312 -86201315 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 4790 253 71 44 chr9 31661312 31661396 -86201231 + L1PA13 LINE L1 3752 3832 -3733 207 0 0 0 chr9 31661396 31661419 -86201208 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4790 253 71 44 chr9 31661419 31662801 -86199826 + L1PA13 LINE L1 3832 5175 -2390 448 168 20 10 chr9 31663722 31663823 -86198804 + CT-rich Low_complexity Low_complexity 3 104 0 2027 196 62 35 chr9 31663845 31664309 -86198318 - MER101B LTR ERV1 0 570 94 21 36 0 0 chr9 31665171 31665199 -86197428 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr9 31665946 31665975 -86196652 + AT_rich Low_complexity Low_complexity 1 29 0 22 56 0 0 chr9 31666092 31666128 -86196499 + AT_rich Low_complexity Low_complexity 1 36 0 36 23 0 0 chr9 31666361 31666404 -86196223 + AT_rich Low_complexity Low_complexity 1 43 0 467 252 236 8 chr9 31667282 31667524 -86195103 - L1M4 LINE L1 -2297 3849 3553 234 152 0 0 chr9 31667555 31667603 -86195024 - Alu SINE Alu -11 122 85 753 203 61 6 chr9 31667603 31667766 -86194861 - AluJo SINE Alu -130 182 11 274 281 140 22 chr9 31667806 31668390 -86194237 - L1M4 LINE L1 -2678 3468 2816 421 197 0 0 chr9 31668493 31668593 -86194034 - L1ME LINE L1 -348 5814 5715 571 214 58 0 chr9 31668599 31668753 -86193874 - L1MA8 LINE L1 -2 6289 6127 * 2485 185 17 35 chr9 31668750 31668830 -86193797 + L1MA8 LINE L1 5590 5670 -621 1922 98 14 44 chr9 31668830 31669127 -86193500 + AluSx SINE Alu 1 288 -24 2485 185 17 35 chr9 31669127 31669586 -86193041 + L1MA8 LINE L1 5670 6119 -172 231 170 0 0 chr9 31669669 31669716 -86192911 + (TG)n Simple_repeat Simple_repeat 2 48 0 2940 168 58 5 chr9 31669781 31670387 -86192240 - L1MA4 LINE L1 -5 6295 5658 362 222 65 9 chr9 31670391 31670499 -86192128 - L1MA4 LINE L1 -1754 4392 4279 * 5801 195 37 17 chr9 31670472 31671784 -86190843 - L1 LINE L1 -1475 4853 3515 4077 127 6 138 chr9 31671785 31672700 -86189927 + LTR25 LTR ERV1 1 794 0 4246 245 68 26 chr9 31672717 31675476 -86187151 - L1 LINE L1 -2812 3516 539 238 200 0 40 chr9 31676059 31676109 -86186518 - L1 LINE L1 -6092 167 120 183 347 61 95 chr9 31676463 31676725 -86185902 + L2 LINE L2 2897 3149 -123 275 222 48 24 chr9 31676752 31676919 -86185708 + (TA)n Simple_repeat Simple_repeat 1 171 0 24 53 0 0 chr9 31677055 31677093 -86185534 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr9 31677741 31677764 -86184863 + AT_rich Low_complexity Low_complexity 1 23 0 32 0 0 0 chr9 31678002 31678034 -86184593 + AT_rich Low_complexity Low_complexity 1 32 0 922 241 118 29 chr9 31678534 31678849 -86183778 - MER2 DNA MER2_type 0 344 2 24 0 0 0 chr9 31679089 31679113 -86183514 + AT_rich Low_complexity Low_complexity 1 24 0 187 258 19 0 chr9 31679415 31679477 -86183150 + MIR SINE MIR 46 110 -98 1041 67 0 0 chr9 31679790 31679924 -86182703 + L1PA7 LINE L1 6019 6152 -2 21 89 0 0 chr9 31679955 31680011 -86182616 + AT_rich Low_complexity Low_complexity 1 56 0 2186 78 25 0 chr9 31680554 31680835 -86181792 - AluY SINE Alu -23 288 1 1482 211 21 27 chr9 31681713 31682045 -86180582 + MLT2C1 LTR ERVL 5 334 -63 717 192 3 3 chr9 31682048 31682368 -86180259 + (TA)n Simple_repeat Simple_repeat 1 320 0 2010 79 68 0 chr9 31683894 31684173 -86178454 + AluY SINE Alu 1 298 -13 703 130 0 0 chr9 31684370 31684470 -86178157 - AluS SINE Alu -213 100 1 32 0 0 0 chr9 31684525 31684557 -86178070 + AT_rich Low_complexity Low_complexity 1 32 0 220 200 36 0 chr9 31684586 31684641 -86177986 + (TTTA)n Simple_repeat Simple_repeat 4 60 0 9725 203 68 81 chr9 31684773 31687980 -86174647 + L1MA4 LINE L1 11 3175 -4390 229 379 57 24 chr9 31688655 31688866 -86173761 - MIR SINE MIR -4 258 41 270 296 0 0 chr9 31689296 31689367 -86173260 + L1M4b LINE L1 735 805 -6054 504 264 101 76 chr9 31689794 31690134 -86172493 + L1M4b LINE L1 1188 1549 -5306 2152 114 3 0 chr9 31690134 31690433 -86172194 + AluSg SINE Alu 1 300 -10 504 264 101 76 chr9 31690433 31690656 -86171971 + L1M4b LINE L1 1549 1765 -5090 4856 169 19 13 chr9 31690661 31692271 -86170356 + L1PA15 LINE L1 4552 6165 0 229 176 29 15 chr9 31692276 31692336 -86170291 + (TA)n Simple_repeat Simple_repeat 1 64 -5 189 0 0 0 chr9 31692336 31692357 -86170270 + (TG)n Simple_repeat Simple_repeat 2 22 0 229 176 29 15 chr9 31692357 31692364 -86170263 + (TA)n Simple_repeat Simple_repeat 64 69 0 1195 264 107 15 chr9 31692365 31692823 -86169804 - MLT1D LTR MaLR -3 502 3 1116 278 30 83 chr9 31692825 31693118 -86169509 + L1M4b LINE L1 1754 2061 -4898 2081 100 17 0 chr9 31693118 31693419 -86169208 - AluSc SINE Alu -3 306 1 1116 278 30 83 chr9 31693419 31693827 -86168800 + L1M4b LINE L1 2061 2418 -4541 19963 30 3 2 chr9 31694058 31697262 -86165365 - L1PA3 LINE L1 -4 6151 2945 293 348 70 18 chr9 31697821 31698048 -86164579 - MLT1L LTR MaLR -18 597 359 3116 210 26 69 chr9 31699849 31700805 -86161822 + L1MA4 LINE L1 5042 5956 -1609 979 164 12 0 chr9 31700809 31700980 -86161647 - L1PA13 LINE L1 -6 6157 5985 6866 188 23 20 chr9 31700985 31702378 -86160249 - L1PA13 LINE L1 -4351 2446 1037 4805 188 35 20 chr9 31702386 31704066 -86158561 + L1MA4 LINE L1 5969 7668 -51 207 279 163 0 chr9 31705041 31705127 -86157500 - MIR SINE MIR -44 218 119 441 181 35 17 chr9 31705319 31705435 -86157192 - L1PA2 LINE L1 0 6155 6038 39 50 0 0 chr9 31705867 31705927 -86156700 + AT_rich Low_complexity Low_complexity 1 60 0 11172 149 27 25 chr9 31705963 31707963 -86154664 - Tigger1 DNA MER2_type 0 2418 414 321 169 0 0 chr9 31707963 31708022 -86154605 + (CATATA)n Simple_repeat Simple_repeat 4 62 0 26 30 0 0 chr9 31710591 31710624 -86152003 + AT_rich Low_complexity Low_complexity 1 33 0 1898 191 50 35 chr9 31711374 31711916 -86150711 + MLT2A2 LTR ERVL 1 554 0 318 315 60 67 chr9 31712606 31713351 -86149276 + MER110-int LTR ERV1 2243 2982 -1665 1467 244 11 22 chr9 31714174 31714531 -86148096 - MLT1A1 LTR MaLR 0 365 13 24 77 0 0 chr9 31715299 31715351 -86147276 + AT_rich Low_complexity Low_complexity 1 52 0 795 283 71 30 chr9 31715591 31715987 -86146640 + MER92A LTR ERV1 1 412 0 681 166 225 0 chr9 31715989 31716158 -86146469 + MLT1E1 LTR MaLR 446 652 -2 21 0 0 0 chr9 31716462 31716483 -86146144 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 31716538 31716559 -86146068 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 31717061 31717082 -86145545 + AT_rich Low_complexity Low_complexity 1 21 0 4496 23 0 0 chr9 31717469 31717996 -86144631 - L1PA3 LINE L1 -349 5806 5280 2704 34 0 0 chr9 31717996 31718312 -86144315 + L1PA3 LINE L1 5836 6155 0 306 274 84 73 chr9 31718312 31718448 -86144179 + HAL1 LINE L1 907 1040 -1467 2249 57 0 27 chr9 31718448 31718747 -86143880 - AluY SINE Alu -15 296 6 306 274 84 73 chr9 31718747 31718884 -86143743 + HAL1 LINE L1 1040 1183 -1324 3629 137 23 2 chr9 31718998 31719729 -86142898 + L1PB1 LINE L1 5039 5791 -360 2656 88 0 31 chr9 31719758 31720146 -86142481 + L1PB1 LINE L1 5776 6151 0 301 233 38 25 chr9 31720174 31720333 -86142294 + L1MEc LINE L1 2156 2316 -4080 1413 274 147 27 chr9 31720393 31720918 -86141709 - MLT1E LTR MaLR -3 590 3 1395 249 81 20 chr9 31720933 31721524 -86141103 + L1MEc LINE L1 2345 2971 -3244 1560 262 60 44 chr9 31721648 31721773 -86140854 + L1MEc LINE L1 2958 3079 -3136 2110 113 0 3 chr9 31721773 31722082 -86140545 + AluSg SINE Alu 1 308 -2 1560 262 60 44 chr9 31722082 31723004 -86139623 + L1MEc LINE L1 3079 4022 -2193 984 269 130 7 chr9 31723013 31723560 -86139067 + L1MEc LINE L1 4234 4847 -1368 * 1627 149 8 102 chr9 31723536 31723839 -86138788 - L1M3 LINE L1 -577 5757 5496 1645 163 14 14 chr9 31723839 31724127 -86138500 + AluJb SINE Alu 7 294 -18 1627 149 8 102 chr9 31724127 31724205 -86138422 - L1M3 LINE L1 -838 5496 5412 2411 175 39 50 chr9 31724240 31724784 -86137843 + L1MA10 LINE L1 5736 6273 -61 306 0 0 0 chr9 31725381 31725415 -86137212 + (CA)n Simple_repeat Simple_repeat 2 35 0 578 274 56 41 chr9 31725473 31725670 -86136957 + MIR SINE MIR 25 224 -38 22 56 0 0 chr9 31725826 31725862 -86136765 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr9 31726088 31726111 -86136516 + AT_rich Low_complexity Low_complexity 1 23 0 1337 245 85 76 chr9 31726934 31727804 -86134823 + LTR1B LTR ERV1 1 1014 -6 276 91 0 0 chr9 31728780 31728824 -86133803 + (CAAAA)n Simple_repeat Simple_repeat 3 46 0 5394 132 13 2 chr9 31730197 31731119 -86131508 + L1PA13 LINE L1 5227 6158 -5 420 324 48 24 chr9 31731152 31731362 -86131265 - MIR SINE MIR 0 262 48 2328 78 0 10 chr9 31732585 31732892 -86129735 - AluSq SINE Alu -9 304 1 183 289 128 54 chr9 31732926 31733168 -86129459 + L2 LINE L2 2372 2631 -683 260 298 69 8 chr9 31733259 31733390 -86129237 + MIR SINE MIR 68 206 -56 402 205 0 13 chr9 31733616 31733694 -86128933 - AluY SINE Alu -19 292 216 207 139 0 0 chr9 31734324 31734360 -86128267 + (TG)n Simple_repeat Simple_repeat 2 37 0 719 269 55 70 chr9 31734447 31734805 -86127822 - LTR16A LTR ERVL -1 456 90 657 349 62 27 chr9 31735462 31735610 -86127017 - ERVL LTR ERVL -808 4956 4815 197 32 0 32 chr9 31735610 31735641 -86126986 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 657 349 62 27 chr9 31735641 31735977 -86126650 - ERVL LTR ERVL -949 4815 4455 22 0 0 0 chr9 31738431 31738453 -86124174 + AT_rich Low_complexity Low_complexity 1 22 0 2228 100 7 0 chr9 31738680 31738980 -86123647 + AluSq SINE Alu 1 302 -11 206 32 32 0 chr9 31738980 31739011 -86123616 + (GGAA)n Simple_repeat Simple_repeat 1 32 0 3400 167 18 10 chr9 31739049 31739677 -86122950 + MER41B LTR ERV1 1 633 -2 257 284 14 27 chr9 31741104 31741178 -86121449 + MLT1I LTR MaLR 98 170 -239 253 305 86 0 chr9 31741481 31741586 -86121041 + MLT1I LTR MaLR 294 407 -2 231 171 14 71 chr9 31741992 31742062 -86120565 - MIR SINE MIR -77 185 120 3115 32 3 0 chr9 31742497 31742875 -86119752 + L1PA2 LINE L1 5777 6155 0 28 48 0 0 chr9 31742875 31742917 -86119710 + AT_rich Low_complexity Low_complexity 1 42 0 26 64 0 0 chr9 31743312 31743359 -86119268 + AT_rich Low_complexity Low_complexity 1 47 0 225 301 106 18 chr9 31743790 31743903 -86118724 + L2 LINE L2 3190 3312 -1 271 353 82 22 chr9 31744440 31744672 -86117955 - L2 LINE L2 -464 2850 2605 29 28 0 0 chr9 31745168 31745204 -86117423 + AT_rich Low_complexity Low_complexity 1 36 0 1631 164 7 18 chr9 31745623 31745904 -86116723 + MSTB LTR MaLR 1 278 -148 1497 182 40 3 chr9 31745958 31746260 -86116367 + MSTB-int LTR MaLR 1 313 -1338 959 193 84 6 chr9 31746262 31746640 -86115987 + MSTA LTR MaLR 2 428 0 6569 217 19 14 chr9 31746642 31746712 -86115915 + MSTB-int LTR MaLR 312 380 -1271 2253 114 0 6 chr9 31746712 31747027 -86115600 + AluSp SINE Alu 1 313 0 6569 217 19 14 chr9 31747027 31748288 -86114339 + MSTB-int LTR MaLR 380 1651 0 2213 172 35 33 chr9 31748288 31748713 -86113914 + MSTB LTR MaLR 1 426 0 910 175 95 136 chr9 31748760 31749245 -86113382 - MER4C LTR ERV1 0 465 1 50 31 0 0 chr9 31750211 31750275 -86112352 + AT_rich Low_complexity Low_complexity 1 64 0 771 241 48 22 chr9 31750625 31750940 -86111687 - L1MDa LINE L1 -3940 2466 2144 1696 236 53 61 chr9 31751040 31752030 -86110597 - L1MDa LINE L1 -4416 1990 827 715 239 74 0 chr9 31752030 31752206 -86110421 - LTR47A LTR ERVL 0 452 264 1763 293 94 31 chr9 31752480 31753257 -86109370 - L1MDa LINE L1 -5578 831 6 1984 113 3 67 chr9 31753721 31754048 -86108579 + AluY SINE Alu 1 306 -5 237 309 0 0 chr9 31755645 31755768 -86106859 + (TA)n Simple_repeat Simple_repeat 2 124 0 189 121 0 0 chr9 31756027 31756060 -86106567 + (CA)n Simple_repeat Simple_repeat 2 34 0 23 0 0 0 chr9 31756318 31756341 -86106286 + AT_rich Low_complexity Low_complexity 1 23 0 300 321 109 36 chr9 31758070 31758344 -86104283 - L2 LINE L2 -689 2625 2332 35 83 0 0 chr9 31759231 31759315 -86103312 + AT_rich Low_complexity Low_complexity 1 84 0 39 38 0 0 chr9 31759450 31759503 -86103124 + AT_rich Low_complexity Low_complexity 1 53 0 1500 199 86 158 chr9 31759868 31760813 -86101814 - LTR28 LTR ERV1 -1 1019 1 2183 84 0 0 chr9 31761374 31761648 -86100979 + AluSg SINE Alu 1 274 -36 246 32 0 0 chr9 31761654 31761685 -86100942 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 198 103 0 0 chr9 31761854 31761883 -86100744 + (TA)n Simple_repeat Simple_repeat 1 29 0 236 212 15 0 chr9 31762395 31762461 -86100166 + (TATATG)n Simple_repeat Simple_repeat 4 70 0 1905 187 6 2 chr9 31763210 31763557 -86099070 - MER7A DNA MER2_type 0 346 4 23 68 0 0 chr9 31763578 31763622 -86099005 + AT_rich Low_complexity Low_complexity 1 44 0 5644 135 33 3 chr9 31764978 31765854 -86096773 + THE1B-int LTR MaLR 679 1580 0 1798 148 84 26 chr9 31765854 31766198 -86096429 + THE1B LTR MaLR 1 364 0 3682 215 58 25 chr9 31766200 31767725 -86094902 - L1MA5 LINE L1 -309 5991 4420 41363 42 29 1 chr9 31767732 31773697 -86088930 + L1PA4 LINE L1 1 6131 -24 1541 82 0 0 chr9 31773697 31773891 -86088736 + AluY SINE Alu 101 294 -17 2500 153 108 0 chr9 31774707 31775144 -86087483 + MER1A DNA MER1_type 2 485 -44 2249 84 0 13 chr9 31775145 31775456 -86087171 - AluY SINE Alu -4 307 1 29 70 0 0 chr9 31776291 31776348 -86086279 + AT_rich Low_complexity Low_complexity 1 57 0 186 43 0 0 chr9 31776896 31776919 -86085708 + (CCCTAA)n Simple_repeat Simple_repeat 1 23 0 2111 128 0 3 chr9 31777084 31777390 -86085237 + AluSx SINE Alu 1 305 -7 271 310 20 65 chr9 31777551 31777751 -86084876 + HAL1 LINE L1 91 281 -2226 263 289 21 35 chr9 31777752 31777894 -86084733 + HAL1 LINE L1 1238 1377 -1130 2107 107 3 7 chr9 31778019 31778308 -86084319 - AluSg SINE Alu -18 292 5 709 292 4 23 chr9 31778324 31778581 -86084046 + HAL1 LINE L1 1505 1756 -751 * 1258 181 21 60 chr9 31778575 31778906 -86083721 - L1M3 LINE L1 -494 5674 5357 2196 131 0 0 chr9 31778923 31779258 -86083369 - L1PA13 LINE L1 -6 6157 5823 4130 197 13 12 chr9 31779260 31780180 -86082447 + L1P LINE L1 3050 3970 -2176 1540 130 13 0 chr9 31780280 31780518 -86082109 + L1P4 LINE L1 5573 5813 -348 * 1824 246 55 8 chr9 31780511 31780564 -86082063 - L1M3 LINE L1 -772 5374 5325 445 138 43 0 chr9 31780564 31780658 -86081969 - L1PA13 LINE L1 0 6163 6066 1824 246 55 8 chr9 31780658 31781116 -86081511 - L1M3 LINE L1 -821 5325 4839 23 33 0 0 chr9 31782441 31782471 -86080156 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chr9 31782582 31782608 -86080019 + AT_rich Low_complexity Low_complexity 1 26 0 323 364 143 24 chr9 31782654 31783110 -86079517 - L2 LINE L2 -841 2473 1964 319 295 14 65 chr9 31783465 31783604 -86079023 - MIR SINE MIR -10 252 121 506 236 9 0 chr9 31784359 31784469 -86078158 - MLT1C LTR MaLR 0 467 357 374 344 71 6 chr9 31784669 31784852 -86077775 + MIR SINE MIR 30 224 -38 26 30 0 0 chr9 31784898 31784931 -86077696 + AT_rich Low_complexity Low_complexity 1 33 0 24 32 0 0 chr9 31785009 31785040 -86077587 + AT_rich Low_complexity Low_complexity 1 31 0 258 339 87 8 chr9 31785922 31786049 -86076578 - L2 LINE L2 -5 3308 3172 974 184 11 0 chr9 31786082 31786261 -86076366 - L1PA16 LINE L1 -124 6042 5862 2748 7 0 0 chr9 31787243 31787546 -86075081 - AluYa5 SINE Alu -8 303 1 27 0 0 0 chr9 31787644 31787671 -86074956 + AT_rich Low_complexity Low_complexity 1 27 0 5202 31 0 0 chr9 31788802 31789414 -86073213 + L1PA4 LINE L1 5536 6147 -8 22 0 0 0 chr9 31789414 31789436 -86073191 + AT_rich Low_complexity Low_complexity 1 22 0 668 248 48 64 chr9 31789452 31789792 -86072835 + L1M1 LINE L1 3007 3340 -4225 300 91 0 0 chr9 31789792 31789836 -86072791 + (TA)n Simple_repeat Simple_repeat 1 44 0 668 248 48 64 chr9 31789836 31789914 -86072713 + L1M1 LINE L1 3340 3418 -4147 6123 242 71 17 chr9 31790017 31793644 -86068983 - L1 LINE L1 -1871 4977 1153 892 319 30 0 chr9 31793887 31794153 -86068474 + LTR40a LTR ERVL 244 517 -2 1606 182 98 6 chr9 31794772 31795107 -86067520 + MLT1B LTR MaLR 20 385 -5 2243 95 7 0 chr9 31795228 31795522 -86067105 + AluSx SINE Alu 1 296 -16 425 254 116 7 chr9 31796605 31796743 -86065884 + MER21B LTR ERV1 19 171 -692 4013 119 5 5 chr9 31796857 31797472 -86065155 - L1PB2 LINE L1 -2 6149 5535 445 139 13 13 chr9 31797472 31797541 -86065086 + L1PA10 LINE L1 6085 6163 -5 1438 97 0 0 chr9 31797549 31797755 -86064872 + L1P5 LINE L1 5315 5520 -631 357 225 136 75 chr9 31797759 31798039 -86064588 - L1MEc LINE L1 -4087 2309 2013 521 288 134 16 chr9 31798253 31798812 -86063815 + L1MC/D LINE L1 5044 5665 -577 197 390 0 0 chr9 31798933 31798992 -86063635 + L2 LINE L2 2986 3044 -228 1009 217 116 31 chr9 31799324 31799651 -86062976 + MLT1A1 LTR MaLR 11 365 0 524 338 89 38 chr9 31800144 31800615 -86062012 + L1M4 LINE L1 3690 4184 -1962 584 218 133 37 chr9 31800710 31801086 -86061541 + L1M4 LINE L1 4297 4708 -1438 347 326 134 11 chr9 31802660 31802847 -86059780 + MIR SINE MIR 48 257 -5 1477 297 87 54 chr9 31804060 31805028 -86057599 + L1MCc LINE L1 727 1661 -5461 222 116 0 0 chr9 31805028 31805071 -86057556 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1477 297 87 54 chr9 31805071 31805730 -86056897 + L1MCc LINE L1 1661 2630 -4492 1787 172 25 3 chr9 31805730 31806055 -86056572 - MER1B DNA MER1_type -2 335 4 1477 297 87 54 chr9 31806055 31806235 -86056392 + L1MCc LINE L1 2630 2803 -4319 42 36 0 0 chr9 31806376 31806432 -86056195 + AT_rich Low_complexity Low_complexity 1 56 0 21 36 0 0 chr9 31806463 31806491 -86056136 + AT_rich Low_complexity Low_complexity 1 28 0 942 266 96 25 chr9 31806902 31807446 -86055181 + L1MCc LINE L1 2747 3287 -3654 882 259 38 9 chr9 31807455 31807795 -86054832 + L1M4 LINE L1 4901 5250 -896 5551 147 4 5 chr9 31807799 31808718 -86053909 + L1PB3 LINE L1 3776 4693 -1453 870 139 29 0 chr9 31809266 31809429 -86053198 - L1PB3 LINE L1 -662 5492 5335 3380 156 20 34 chr9 31809429 31809704 -86052923 + L1PB3 LINE L1 5499 5776 -378 2562 37 0 0 chr9 31809704 31810000 -86052627 - AluY SINE Alu -15 296 1 3380 156 20 34 chr9 31810000 31810033 -86052594 + L1PB3 LINE L1 5776 5808 -346 282 56 0 0 chr9 31810033 31810069 -86052558 + (CA)n Simple_repeat Simple_repeat 2 37 0 3380 156 20 34 chr9 31810069 31810406 -86052221 + L1PB3 LINE L1 5808 6141 -13 1891 149 76 15 chr9 31810744 31811087 -86051540 - THE1B LTR MaLR 0 364 1 231 258 41 52 chr9 31811147 31811244 -86051383 + LTR33A LTR ERVL 35 130 -393 435 319 172 4 chr9 31811305 31811537 -86051090 + LTR33A LTR ERVL 253 523 0 21 89 0 0 chr9 31811690 31811746 -86050881 + AT_rich Low_complexity Low_complexity 1 56 0 35 54 0 0 chr9 31812079 31812135 -86050492 + AT_rich Low_complexity Low_complexity 1 56 0 3649 215 32 7 chr9 31812343 31813235 -86049392 + L1 LINE L1 4131 5045 -1101 1222 142 5 0 chr9 31813251 31813463 -86049164 + L1MA7 LINE L1 4536 4748 -1398 * 4526 200 18 16 chr9 31813462 31813883 -86048744 + L1MA7 LINE L1 5069 5488 -803 1902 148 27 30 chr9 31813883 31814248 -86048379 + THE1B LTR MaLR 1 364 0 10928 116 7 0 chr9 31814248 31815817 -86046810 + THE1B-int LTR MaLR 1 1580 0 1981 151 25 25 chr9 31815817 31816181 -86046446 + THE1B LTR MaLR 1 364 0 4526 200 18 16 chr9 31816181 31816948 -86045679 + L1MA7 LINE L1 5487 6264 -27 27 49 0 0 chr9 31816951 31816992 -86045635 + AT_rich Low_complexity Low_complexity 1 41 0 1094 249 105 56 chr9 31817457 31817990 -86044637 + L1ME1 LINE L1 5560 6118 -48 309 287 70 7 chr9 31817890 31818033 -86044594 + L1MA10 LINE L1 6169 6320 -14 * 4160 35 0 0 chr9 31818239 31818747 -86043880 - L1P LINE L1 -1361 4785 4278 520 221 97 10 chr9 31818876 31819071 -86043556 - L1M4 LINE L1 -1571 4575 4364 228 212 30 15 chr9 31819138 31819204 -86043423 + (CATATA)n Simple_repeat Simple_repeat 3 69 0 3756 215 127 88 chr9 31819360 31821048 -86041579 + MER52A LTR ERV1 1 1755 0 1930 101 11 24 chr9 31821150 31821484 -86041143 - AluSx SINE Alu 0 331 2 2318 182 45 2 chr9 31821686 31822202 -86040425 + L1MB3 LINE L1 5643 6180 -3 437 136 0 0 chr9 31822288 31822354 -86040273 + AluS SINE Alu 1 66 -245 21 0 0 0 chr9 31823117 31823138 -86039489 + AT_rich Low_complexity Low_complexity 1 21 0 2274 188 19 0 chr9 31823145 31823609 -86039018 - L1MA4 LINE L1 -16 6284 5812 1102 179 44 0 chr9 31823648 31823947 -86038680 - L1MA4 LINE L1 -743 5403 5189 1089 112 0 10 chr9 31824863 31825141 -86037486 - THE1-int LTR MaLR -751 829 483 243 188 0 0 chr9 31825826 31825874 -86036753 + CT-rich Low_complexity Low_complexity 2 49 0 3565 88 10 0 chr9 31826029 31826518 -86036109 - THE1-int LTR MaLR -1085 495 2 973 320 85 54 chr9 31826617 31827030 -86035597 - HERV16 LTR ERVL -1989 3007 2609 2179 78 0 63 chr9 31827030 31827362 -86035265 - AluY SINE Alu 0 311 1 973 320 85 54 chr9 31827362 31828836 -86033791 - HERV16 LTR ERVL -2387 2609 999 536 222 23 5 chr9 31828866 31829015 -86033612 + L1MC3 LINE L1 7637 7995 0 28 29 0 0 chr9 31829052 31829087 -86033540 + AT_rich Low_complexity Low_complexity 1 35 0 221 164 0 36 chr9 31829939 31829994 -86032633 + (CATA)n Simple_repeat Simple_repeat 2 54 0 209 213 0 0 chr9 31830438 31830485 -86032142 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 327 345 20 7 chr9 31832048 31832196 -86030431 - L1MEc LINE L1 -6041 355 206 22 35 0 0 chr9 31832329 31832358 -86030269 + AT_rich Low_complexity Low_complexity 1 29 0 286 218 78 63 chr9 31832381 31832523 -86030104 - L1MCc LINE L1 -4932 1491 1348 6197 97 13 3 chr9 31833429 31834765 -86027862 + L1PA10 LINE L1 4821 6164 -4 672 235 59 4 chr9 31834785 31835017 -86027610 + L1ME LINE L1 5308 5553 -609 22 0 0 0 chr9 31836242 31836264 -86026363 + AT_rich Low_complexity Low_complexity 1 22 0 7476 30 6 0 chr9 31840747 31842118 -86020509 - L1PA3 LINE L1 -7 6148 4772 17870 36 0 0 chr9 31842118 31844320 -86018307 + L1P LINE L1 1521 3722 -2424 603 314 74 19 chr9 31844792 31845158 -86017469 - L1MEd LINE L1 -5406 713 328 261 204 41 51 chr9 31845428 31845526 -86017101 + L1MC4 LINE L1 6614 6710 -1332 1527 245 20 9 chr9 31845563 31845910 -86016717 - MLT1A1 LTR MaLR -12 353 3 772 224 87 20 chr9 31846945 31847199 -86015428 - LTR37B LTR ERV1 0 468 198 430 247 20 13 chr9 31847433 31847583 -86015044 - L1MA10 LINE L1 -8 6326 6176 339 225 22 11 chr9 31847659 31847748 -86014879 - L1M4 LINE L1 -1210 4936 4847 * 9778 105 14 7 chr9 31847734 31848245 -86014382 + L1P LINE L1 2769 3275 -2871 207 0 0 0 chr9 31848245 31848268 -86014359 + (CA)n Simple_repeat Simple_repeat 2 24 0 9778 105 14 7 chr9 31848268 31849262 -86013365 + L1P LINE L1 3275 4284 -1862 188 111 0 83 chr9 31849398 31849434 -86013193 - L3b LINE CR1 -22 1561 1529 2387 75 0 3 chr9 31849458 31849763 -86012864 + AluY SINE Alu 6 309 -2 24 32 0 0 chr9 31850435 31850466 -86012161 + AT_rich Low_complexity Low_complexity 1 31 0 223 239 0 28 chr9 31850673 31850744 -86011883 + A-rich Low_complexity Low_complexity 5 73 0 389 191 38 0 chr9 31850790 31850971 -86011656 + L1MA4A LINE L1 6032 6280 -23 1498 137 44 15 chr9 31851614 31851885 -86010742 + LTR26 LTR ERV1 9 287 -316 1602 186 11 0 chr9 31851987 31852266 -86010361 + LTR26 LTR ERV1 322 603 0 27 29 0 0 chr9 31852558 31852592 -86010035 + AT_rich Low_complexity Low_complexity 1 34 0 322 223 50 79 chr9 31853757 31853896 -86008731 - L1ME LINE L1 -305 5816 5682 21 0 0 0 chr9 31853902 31853923 -86008704 + AT_rich Low_complexity Low_complexity 1 21 0 400 311 81 35 chr9 31854772 31855134 -86007493 - L1ME LINE L1 -1548 4598 4190 2210 78 0 0 chr9 31855134 31855451 -86007176 + AluY SINE Alu 1 317 0 400 311 81 35 chr9 31855451 31855744 -86006883 - L1ME LINE L1 -1956 4190 3912 * 2779 191 63 22 chr9 31855740 31856240 -86006387 + L1MB2 LINE L1 5164 5707 -464 1965 134 69 29 chr9 31856240 31856590 -86006037 + THE1B LTR MaLR 1 364 0 2779 191 63 22 chr9 31856590 31856847 -86005780 + L1MB2 LINE L1 5707 5952 -219 2864 292 47 94 chr9 31857512 31858187 -86004440 - L1MEc LINE L1 -2093 4551 3846 1282 113 5 0 chr9 31858187 31858373 -86004254 - AluSg/x SINE Alu -1 308 122 2864 292 47 94 chr9 31858373 31859593 -86003034 - L1MEc LINE L1 -2798 3846 2625 383 330 108 35 chr9 31859606 31860060 -86002567 - L1MEc LINE L1 -5981 561 75 22 0 0 0 chr9 31861460 31861482 -86001145 + AT_rich Low_complexity Low_complexity 1 22 0 351 313 74 42 chr9 31861860 31862077 -86000550 + L1MC/D LINE L1 5294 5517 -2291 28 0 0 0 chr9 31862383 31862411 -86000216 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr9 31862465 31862493 -86000134 + AT_rich Low_complexity Low_complexity 1 28 0 359 368 7 7 chr9 31862931 31863067 -85999560 - L2 LINE L2 -469 2845 2710 1311 165 54 17 chr9 31863246 31863543 -85999084 + L1MA7 LINE L1 5984 6291 0 702 286 11 11 chr9 31863548 31863726 -85998901 + MIR SINE MIR 18 195 -67 283 315 310 0 chr9 31863822 31864228 -85998399 - L2 LINE L2 -748 2566 2035 1881 134 3 10 chr9 31864833 31865124 -85997503 - AluSx SINE Alu -20 292 4 209 95 0 24 chr9 31865260 31865302 -85997325 + (CAAAA)n Simple_repeat Simple_repeat 5 45 0 240 413 70 0 chr9 31866304 31866546 -85996081 + MIR SINE MIR 3 261 -1 1166 233 56 50 chr9 31867720 31868191 -85994436 - L1MC/D LINE L1 -720 5446 4997 1600 204 28 45 chr9 31868191 31868588 -85994039 + MLT1B LTR MaLR 1 390 0 1166 233 56 50 chr9 31868588 31868772 -85993855 - L1MC/D LINE L1 -1169 4997 4816 924 128 0 0 chr9 31868782 31868923 -85993704 - L1PA16 LINE L1 -3 6163 6023 3848 26 2 0 chr9 31868945 31869398 -85993229 - L1PA3 LINE L1 -5 6150 5697 1347 13 0 0 chr9 31869398 31869549 -85993078 + L1PA3 LINE L1 5528 5678 -477 1272 108 16 0 chr9 31869549 31869735 -85992892 - MER9 LTR ERVK -322 189 1 309 290 40 8 chr9 31870034 31870158 -85992469 + L1ME LINE L1 5345 5472 -692 6214 29 2 2 chr9 31870914 31871889 -85990738 - L1PA3 LINE L1 -149 6006 5032 6263 24 0 0 chr9 31871889 31872633 -85989994 + L1PA3 LINE L1 4317 5060 -1086 277 224 40 0 chr9 31872636 31872712 -85989915 - L1PA16 LINE L1 -137 6029 5951 * 849 239 71 11 chr9 31872706 31872986 -85989641 - L1M4 LINE L1 -1338 4808 4512 22 0 0 0 chr9 31873346 31873368 -85989259 + AT_rich Low_complexity Low_complexity 1 22 0 1167 277 78 8 chr9 31873382 31873765 -85988862 + MER92A LTR ERV1 3 412 0 2223 94 0 3 chr9 31873858 31874155 -85988472 + AluY SINE Alu 1 296 -15 779 237 63 0 chr9 31874690 31874880 -85987747 - MER58 DNA MER1_type -2200 220 19 21 36 0 0 chr9 31874940 31874968 -85987659 + AT_rich Low_complexity Low_complexity 1 28 0 332 240 62 17 chr9 31875057 31875236 -85987391 - MER53 DNA DNA 0 189 3 769 235 34 12 chr9 31875308 31875681 -85986946 - MER114 LTR ERV 0 648 241 483 220 62 40 chr9 31875789 31875966 -85986661 - MER114 LTR ERV -465 183 3 23 0 0 0 chr9 31876190 31876213 -85986414 + AT_rich Low_complexity Low_complexity 1 23 0 215 182 23 0 chr9 31876221 31876265 -85986362 + (TA)n Simple_repeat Simple_repeat 2 46 0 2308 74 3 10 chr9 31876918 31877227 -85985400 - AluY SINE Alu -4 307 1 22 35 0 0 chr9 31877598 31877627 -85985000 + AT_rich Low_complexity Low_complexity 1 29 0 322 301 90 8 chr9 31878006 31878139 -85984488 - MIR SINE MIR -71 191 48 476 286 144 21 chr9 31878388 31879109 -85983518 + L1M4 LINE L1 3813 4622 -1524 291 318 118 20 chr9 31879369 31879564 -85983063 - L2 LINE L2 -929 2385 2172 1503 202 58 21 chr9 31879645 31880021 -85982606 - MLT1B LTR MaLR 0 390 1 350 209 0 19 chr9 31880169 31880274 -85982353 + GA-rich Low_complexity Low_complexity 2 104 0 6054 127 27 32 chr9 31880342 31881419 -85981208 - MER11C LTR ERVK 0 1071 1 1377 149 47 93 chr9 31881753 31882074 -85980553 + AluJb SINE Alu 1 306 -6 239 352 96 32 chr9 31884506 31884725 -85977902 - MIR SINE MIR -10 252 20 896 168 21 11 chr9 31884736 31884926 -85977701 - L1MA6 LINE L1 0 6300 6109 205 310 48 96 chr9 31885679 31885908 -85976719 - L2 LINE L2 -16 3297 3080 631 256 20 10 chr9 31885925 31886120 -85976507 - MER105 DNA DNA -4 200 4 184 364 35 63 chr9 31886125 31886268 -85976359 - L2 LINE L2 -259 3054 2916 205 173 25 49 chr9 31887707 31887788 -85974839 + (TA)n Simple_repeat Simple_repeat 1 79 0 365 281 138 24 chr9 31888689 31888899 -85973728 - HAL1 LINE L1 -590 1917 1684 239 286 138 20 chr9 31888957 31889153 -85973474 - HAL1 LINE L1 -902 1605 1387 386 265 101 69 chr9 31889222 31889360 -85973267 - HAL1 LINE L1 -1223 1284 1152 396 0 0 0 chr9 31889360 31889404 -85973223 + (CA)n Simple_repeat Simple_repeat 2 45 0 386 265 101 69 chr9 31889404 31889682 -85972945 - HAL1 LINE L1 -1355 1152 818 317 129 0 48 chr9 31891311 31891373 -85971254 + L1PA5 LINE L1 6083 6141 -13 380 246 26 73 chr9 31891413 31891604 -85971023 - L2 LINE L2 -36 3277 3096 28 0 0 0 chr9 31892458 31892486 -85970141 + AT_rich Low_complexity Low_complexity 1 28 0 212 389 0 0 chr9 31892824 31892896 -85969731 + L2 LINE L2 3158 3229 -43 691 290 134 45 chr9 31892896 31893502 -85969125 + MLT2F LTR ERVL 1 660 -3 655 285 95 29 chr9 31894522 31894942 -85967685 + L1ME3A LINE L1 5711 6158 -12 658 250 35 6 chr9 31895652 31895824 -85966803 - MER45A DNA AcHobo -1 177 1 1306 267 74 8 chr9 31896212 31896590 -85966037 + MLT2B1 LTR ERVL 83 485 -35 26 74 0 0 chr9 31897741 31897795 -85964832 + AT_rich Low_complexity Low_complexity 1 54 0 454 258 48 8 chr9 31899309 31899433 -85963194 - MIR SINE MIR -86 176 48 21 71 0 0 chr9 31899497 31899539 -85963088 + AT_rich Low_complexity Low_complexity 1 42 0 26 30 0 0 chr9 31899865 31899898 -85962729 + AT_rich Low_complexity Low_complexity 1 33 0 579 323 5 5 chr9 31900384 31900576 -85962051 + MIR SINE MIR 68 259 -3 234 0 0 0 chr9 31901901 31901927 -85960700 + (TA)n Simple_repeat Simple_repeat 2 27 0 237 144 67 122 chr9 31901927 31902017 -85960610 - L1MC4 LINE L1 -1339 6703 6619 324 85 0 0 chr9 31902020 31902067 -85960560 + MADE1 DNA Mariner 33 79 -1 200 311 0 0 chr9 31902067 31902128 -85960499 + (TA)n Simple_repeat Simple_repeat 1 61 0 649 245 15 81 chr9 31902572 31902845 -85959782 + LTR41 LTR ERVL 506 760 -13 1313 330 169 13 chr9 31902859 31903755 -85958872 - L2 LINE L2 -588 2726 1692 1128 215 37 8 chr9 31903762 31904004 -85958623 + MLT1A1 LTR MaLR 113 361 -4 1022 244 30 20 chr9 31904013 31904308 -85958319 + MER89-int LTR ERV1 1361 1658 -5143 1252 92 0 0 chr9 31904364 31904537 -85958090 - AluYa5 SINE Alu -5 306 134 709 185 0 0 chr9 31906478 31906608 -85956019 + AluJb SINE Alu 182 311 -1 251 175 18 0 chr9 31906629 31906686 -85955941 + (TA)n Simple_repeat Simple_repeat 1 58 0 1335 282 144 71 chr9 31906686 31907627 -85955000 - L2 LINE L2 -1612 1702 693 21 36 0 0 chr9 31908705 31908733 -85953894 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr9 31911300 31911331 -85951296 + AT_rich Low_complexity Low_complexity 1 31 0 279 192 0 0 chr9 31911543 31911595 -85951032 + L2 LINE L2 3262 3313 0 22 35 0 0 chr9 31911608 31911637 -85950990 + AT_rich Low_complexity Low_complexity 1 29 0 356 315 24 0 chr9 31912046 31912173 -85950454 - MLT1E1 LTR MaLR -16 533 404 243 0 0 0 chr9 31913435 31913462 -85949165 + (TTG)n Simple_repeat Simple_repeat 1 27 0 9464 44 1 0 chr9 31913662 31914819 -85947808 - L1PA5 LINE L1 -1122 5024 3867 7102 46 5 1 chr9 31914819 31915956 -85946671 + L1PA5 LINE L1 5012 6151 -3 26 0 0 0 chr9 31915956 31915982 -85946645 + AT_rich Low_complexity Low_complexity 1 26 0 231 88 0 0 chr9 31916651 31916685 -85945942 + (TG)n Simple_repeat Simple_repeat 1 34 0 299 171 66 53 chr9 31916725 31916801 -85945826 - L1MCb LINE L1 -5561 484 408 1124 234 48 7 chr9 31916801 31917070 -85945557 - MLT1B LTR MaLR 0 390 111 1241 251 61 15 chr9 31917144 31917589 -85945038 + L1ME LINE L1 1249 1868 -4558 22 0 0 0 chr9 31917607 31917629 -85944998 + AT_rich Low_complexity Low_complexity 1 22 0 1063 203 67 45 chr9 31917664 31917994 -85944633 + L1ME LINE L1 2062 2398 -4028 1164 216 68 85 chr9 31918760 31918924 -85943703 + L1ME LINE L1 5380 5545 -899 228 67 0 0 chr9 31918924 31918954 -85943673 + (CA)n Simple_repeat Simple_repeat 1 30 0 1164 216 68 85 chr9 31918954 31919399 -85943228 + L1ME LINE L1 5545 5976 -468 1268 275 56 29 chr9 31919411 31919855 -85942772 - MLT1E2 LTR MaLR 0 626 171 1589 60 0 0 chr9 31919856 31920056 -85942571 - L1PA8 LINE L1 -576 5596 5397 4076 73 3 28 chr9 31920056 31920146 -85942481 + L1PA8 LINE L1 5596 5687 -485 2066 117 7 13 chr9 31920146 31920446 -85942181 + AluY SINE Alu 1 298 -13 4076 73 3 28 chr9 31920446 31920929 -85941698 + L1PA8 LINE L1 5687 6158 -14 475 294 65 11 chr9 31920936 31921120 -85941507 - MLT1E1 LTR MaLR -404 250 57 286 325 59 44 chr9 31921251 31921539 -85941088 - MLT1G LTR MaLR -1 594 192 1136 208 4 49 chr9 31922087 31922352 -85940275 - MLT1A1 LTR MaLR 0 365 113 473 240 112 0 chr9 31922355 31922480 -85940147 + LTR52-int LTR ERVL 785 923 -2633 192 77 0 0 chr9 31924682 31924708 -85937919 + (A)n Simple_repeat Simple_repeat 1 26 0 1844 287 50 73 chr9 31924751 31925549 -85937078 + LTR52-int LTR ERVL 2246 3025 -531 243 236 9 94 chr9 31925557 31925663 -85936964 - MER76 LTR ERV -193 495 399 1303 230 78 14 chr9 31925663 31926007 -85936620 + LTR52-int LTR ERVL 3140 3505 -51 761 286 114 19 chr9 31926016 31926212 -85936415 + LTR52 LTR ERVL 2 178 -243 336 24 0 0 chr9 31926212 31926253 -85936374 + (CA)n Simple_repeat Simple_repeat 2 42 0 761 286 114 19 chr9 31926253 31926416 -85936211 + LTR52 LTR ERVL 178 395 -26 23 68 0 0 chr9 31926618 31926662 -85935965 + AT_rich Low_complexity Low_complexity 1 44 0 187 427 10 10 chr9 31927995 31928098 -85934529 + L2 LINE L2 3192 3294 -19 25 65 0 0 chr9 31928179 31928225 -85934402 + AT_rich Low_complexity Low_complexity 1 46 0 448 164 0 0 chr9 31928337 31928404 -85934223 + Tigger2 DNA MER2_type 1 67 -2651 * 2344 166 58 2 chr9 31928390 31928817 -85933810 + Tigger2 DNA MER2_type 2267 2717 -1 220 292 14 14 chr9 31929000 31929072 -85933555 + MIR3 SINE MIR 97 168 -40 576 240 27 27 chr9 31929206 31929352 -85933275 + MER58B DNA MER1_type 189 334 -7 297 0 0 0 chr9 31930310 31930343 -85932284 + (TG)n Simple_repeat Simple_repeat 2 34 0 1402 199 79 8 chr9 31930794 31931175 -85931452 - L1MA9 LINE L1 0 6312 5905 1889 182 120 5 chr9 31931183 31931567 -85931060 - MSTA LTR MaLR 0 428 1 219 36 0 0 chr9 31932913 31932941 -85929686 + (GA)n Simple_repeat Simple_repeat 1 28 0 2018 105 3 18 chr9 31933100 31933410 -85929217 + AluSx SINE Alu 1 306 0 4793 184 21 21 chr9 31933452 31934974 -85927653 - L1PA16 LINE L1 -1 6165 4643 615 139 0 0 chr9 31934979 31935080 -85927547 + MER57A-int LTR ERV1 7437 7537 0 2262 169 10 0 chr9 31935082 31935479 -85927148 + MER57A LTR ERV1 3 403 0 36 0 0 0 chr9 31936154 31936190 -85926437 + AT_rich Low_complexity Low_complexity 1 36 0 645 178 30 0 chr9 31936230 31936365 -85926262 + L1ME3 LINE L1 42 180 -6243 409 326 77 0 chr9 31936501 31936697 -85925930 + L1ME3 LINE L1 2684 2894 -4228 1380 195 37 45 chr9 31936729 31937107 -85925520 + L1MA8 LINE L1 5926 6291 0 611 292 105 16 chr9 31937119 31937567 -85925060 + L1ME3 LINE L1 2916 3403 -3538 469 215 30 15 chr9 31937597 31937732 -85924895 + L1ME2 LINE L1 5398 5534 -628 322 273 187 0 chr9 31937783 31937922 -85924705 + L1ME2 LINE L1 6000 6164 0 276 30 0 0 chr9 31938399 31938432 -85924195 + (CA)n Simple_repeat Simple_repeat 2 34 0 189 0 0 0 chr9 31938491 31938512 -85924115 + (TATAA)n Simple_repeat Simple_repeat 5 25 0 183 282 42 14 chr9 31938753 31938824 -85923803 + L2 LINE L2 3226 3298 -15 22 0 0 0 chr9 31939269 31939291 -85923336 + AT_rich Low_complexity Low_complexity 1 22 0 532 183 0 0 chr9 31939308 31939412 -85923215 - L1PA16 LINE L1 -2 6164 6061 260 291 42 21 chr9 31940202 31940391 -85922236 + L1ME3 LINE L1 3837 4029 -2912 369 216 0 0 chr9 31940560 31940648 -85921979 + (CATATA)n Simple_repeat Simple_repeat 2 89 0 1976 114 60 6 chr9 31940988 31941305 -85921322 - MER9 LTR ERVK 0 511 178 3880 24 2 0 chr9 31941311 31941769 -85920858 - L1PA2 LINE L1 0 6155 5697 1347 13 0 0 chr9 31941769 31941920 -85920707 + L1PA2 LINE L1 5528 5678 -477 1283 102 16 0 chr9 31941920 31942106 -85920521 - MER9 LTR ERVK -322 189 1 309 290 40 8 chr9 31942405 31942529 -85920098 + L1ME LINE L1 5345 5472 -690 1025 309 86 27 chr9 31942870 31943347 -85919280 + L1ME3 LINE L1 5759 6206 -751 333 0 0 0 chr9 31943347 31943384 -85919243 + (CA)n Simple_repeat Simple_repeat 2 38 0 1025 309 86 27 chr9 31943384 31943946 -85918681 + L1ME3 LINE L1 6206 6869 -88 594 324 152 3 chr9 31944032 31944362 -85918265 - L2 LINE L2 -698 2616 2238 26 0 0 0 chr9 31944543 31944569 -85918058 + AT_rich Low_complexity Low_complexity 1 26 0 219 69 0 0 chr9 31944667 31944696 -85917931 + (TA)n Simple_repeat Simple_repeat 2 30 0 487 230 22 7 chr9 31945136 31945275 -85917352 - Charlie1 DNA MER1_type -1 2760 2620 * 849 270 35 0 chr9 31945257 31945487 -85917140 - Charlie1 DNA MER1_type -2522 239 2 390 298 136 14 chr9 31945609 31945888 -85916739 + L1M4 LINE L1 3048 3360 -2786 1417 191 0 52 chr9 31947056 31947344 -85915283 + MER44D DNA MER2_type 156 483 -122 458 240 0 40 chr9 31947427 31947474 -85915153 + MER44D DNA MER2_type 489 536 -1955 381 43 0 0 chr9 31947474 31947521 -85915106 + (CA)n Simple_repeat Simple_repeat 2 48 0 458 240 0 40 chr9 31947521 31947598 -85915029 + MER44D DNA MER2_type 536 608 -1 2009 270 26 64 chr9 31948782 31949474 -85913153 - L1M3e LINE L1 -6358 672 7 276 111 0 0 chr9 31949519 31949564 -85913063 + (TG)n Simple_repeat Simple_repeat 2 46 0 881 283 26 29 chr9 31949569 31949915 -85912712 - L1ME LINE L1 -492 6467 6123 457 264 62 0 chr9 31949968 31950146 -85912481 - L1ME LINE L1 -1310 5631 5443 954 301 96 25 chr9 31950358 31950602 -85912025 - MER90 LTR ERV1 -79 535 310 2050 169 88 8 chr9 31950602 31950998 -85911629 - MSTA LTR MaLR 0 428 1 954 301 96 25 chr9 31950998 31951241 -85911386 - MER90 LTR ERV1 -304 310 13 375 278 71 30 chr9 31951260 31951429 -85911198 - L1ME LINE L1 -4720 2221 2046 378 0 0 0 chr9 31951432 31951474 -85911153 + (TG)n Simple_repeat Simple_repeat 2 43 0 3172 171 13 20 chr9 31951483 31952081 -85910546 - L1PA16 LINE L1 -14 6152 5559 1375 182 0 0 chr9 31952081 31952317 -85910310 + L1PA16 LINE L1 5323 5558 -607 390 295 69 34 chr9 31952348 31952622 -85910005 - L1MDb LINE L1 -5036 1908 1544 435 333 92 11 chr9 31952629 31952998 -85909629 - L1MDb LINE L1 -4897 1526 1128 318 290 56 37 chr9 31953518 31953787 -85908840 - L1MDb LINE L1 -6131 292 19 21 0 0 0 chr9 31953968 31953989 -85908638 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr9 31954074 31954104 -85908523 + AT_rich Low_complexity Low_complexity 1 30 0 678 269 76 59 chr9 31954426 31955084 -85907543 - L1ME LINE L1 -4649 1914 1246 254 370 65 0 chr9 31955099 31955207 -85907420 - L2 LINE L2 -263 3050 2936 15522 189 29 24 chr9 31955228 31955380 -85907247 + L1M1 LINE L1 13 163 -7402 2331 95 0 6 chr9 31955380 31955695 -85906932 - AluSq SINE Alu 0 313 1 15522 189 29 24 chr9 31955695 31958593 -85904034 + L1M1 LINE L1 163 3077 -4488 3305 142 25 20 chr9 31958597 31959204 -85903423 + L1MA2 LINE L1 5695 6304 0 339 189 52 7 chr9 31959847 31960000 -85902627 + (TA)n Simple_repeat Simple_repeat 2 161 0 523 346 43 31 chr9 31960550 31960874 -85901753 - HERVL LTR ERVL -1124 4530 4203 431 305 119 31 chr9 31960909 31961343 -85901284 - L1ME LINE L1 -5018 1354 945 343 265 0 12 chr9 31962260 31962343 -85900284 + MLT1H LTR MaLR 146 227 -322 24 32 0 0 chr9 31962542 31962573 -85900054 + AT_rich Low_complexity Low_complexity 1 31 0 27 81 0 0 chr9 31962903 31962965 -85899662 + AT_rich Low_complexity Low_complexity 1 62 0 1307 224 6 74 chr9 31963468 31963820 -85898807 + MLT2D LTR ERVL 5 332 -82 21 71 0 0 chr9 31963985 31964027 -85898600 + AT_rich Low_complexity Low_complexity 1 42 0 34 0 0 0 chr9 31964108 31964142 -85898485 + AT_rich Low_complexity Low_complexity 1 34 0 2944 207 34 68 chr9 31965684 31966356 -85896271 - LTR1B LTR ERV1 0 826 188 2266 78 0 0 chr9 31966356 31966639 -85895988 - AluSc SINE Alu -26 283 1 2944 207 34 68 chr9 31966639 31966821 -85895806 - LTR1B LTR ERV1 -638 188 1 645 324 50 55 chr9 31967043 31967518 -85895109 + MLT1K LTR MaLR 104 576 -12 22 0 0 0 chr9 31967698 31967720 -85894907 + AT_rich Low_complexity Low_complexity 1 22 0 307 278 83 0 chr9 31968717 31968825 -85893802 + L2 LINE L2 3197 3313 0 4736 190 50 21 chr9 31970420 31972345 -85890282 - L1MA4A LINE L1 0 7365 5390 795 251 48 116 chr9 31972348 31972850 -85889777 - MER66A LTR ERV1 -10 468 1 3521 202 16 8 chr9 31972850 31973611 -85889016 - L1MA4A LINE L1 -1813 5395 4629 593 149 6 28 chr9 31973622 31973768 -85888859 + (TA)n Simple_repeat Simple_repeat 2 145 -33 2048 140 45 28 chr9 31973768 31974124 -85888503 + THE1B LTR MaLR 3 364 0 593 149 6 28 chr9 31974124 31974158 -85888469 + (TA)n Simple_repeat Simple_repeat 145 178 0 422 179 0 0 chr9 31974235 31974302 -85888325 - MER66A LTR ERV1 -10 468 402 306 0 0 0 chr9 31974335 31974369 -85888258 + (TA)n Simple_repeat Simple_repeat 1 34 0 323 161 0 12 chr9 31974483 31974564 -85888063 + (TA)n Simple_repeat Simple_repeat 2 81 0 6073 219 45 35 chr9 31974604 31977940 -85884687 - L1MA4A LINE L1 -2589 4619 689 245 290 161 0 chr9 31979859 31979952 -85882675 - L1ME LINE L1 -537 5584 5477 25 51 0 0 chr9 31980059 31980098 -85882529 + AT_rich Low_complexity Low_complexity 1 39 0 345 296 142 28 chr9 31980413 31980737 -85881890 - L1ME LINE L1 -1440 4706 4346 40 67 0 0 chr9 31980790 31980865 -85881762 + AT_rich Low_complexity Low_complexity 1 75 0 204 97 0 0 chr9 31982651 31982682 -85879945 + (CAT)n Simple_repeat Simple_repeat 3 33 0 759 152 22 60 chr9 31983031 31983215 -85879412 - L1MA8 LINE L1 -3 6288 6112 1076 206 12 16 chr9 31983224 31983471 -85879156 + L1 LINE L1 3663 3908 -2238 920 102 0 38 chr9 31984594 31984780 -85877847 + (TA)n Simple_repeat Simple_repeat 2 180 0 225 0 0 0 chr9 31984790 31984815 -85877812 + (TCTA)n Simple_repeat Simple_repeat 2 26 0 284 339 45 9 chr9 31985388 31985500 -85877127 - L2 LINE L2 -2 3311 3196 22 0 0 0 chr9 31985743 31985765 -85876862 + AT_rich Low_complexity Low_complexity 1 22 0 261 0 0 0 chr9 31986649 31986678 -85875949 + (TA)n Simple_repeat Simple_repeat 1 29 0 2574 185 43 29 chr9 31986781 31987359 -85875268 - LTR9B LTR ERV1 -52 592 7 21 0 0 0 chr9 31988363 31988384 -85874243 + AT_rich Low_complexity Low_complexity 1 21 0 1579 222 109 2 chr9 31988628 31989033 -85873594 + L1ME2 LINE L1 5438 5885 -279 6050 113 47 64 chr9 31989145 31989270 -85873357 + HUERS-P3 LTR ERV1 7889 8015 -904 209 271 0 68 chr9 31989270 31989329 -85873298 + MER5A DNA MER1_type 1 55 -134 6050 113 47 64 chr9 31989329 31989346 -85873281 + HUERS-P3 LTR ERV1 8015 8031 -888 2190 107 0 19 chr9 31989346 31989654 -85872973 - AluSg SINE Alu -8 302 1 6050 113 47 64 chr9 31989654 31990501 -85872126 + HUERS-P3 LTR ERV1 8031 8919 0 2546 189 19 68 chr9 31990501 31991145 -85871482 + LTR9 LTR ERV1 1 612 0 881 174 34 11 chr9 31991145 31991323 -85871304 - L1M4 LINE L1 -477 5707 5526 2077 75 4 11 chr9 31991890 31992158 -85870469 + AluSx SINE Alu 31 296 -16 263 229 36 6 chr9 31992600 31992766 -85869861 + (TA)n Simple_repeat Simple_repeat 2 172 0 22 0 0 0 chr9 31992770 31992792 -85869835 + AT_rich Low_complexity Low_complexity 1 22 0 2664 36 0 3 chr9 31992797 31993102 -85869525 + AluY SINE Alu 2 305 -6 2067 114 36 18 chr9 31993260 31993314 -85869313 - MLT2A1 LTR ERVL 0 444 392 308 102 0 17 chr9 31993314 31993373 -85869254 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 2067 114 36 18 chr9 31993373 31993652 -85868975 - MLT2A1 LTR ERVL -52 392 105 826 333 89 24 chr9 31993842 31994214 -85868413 - LTR16C LTR ERVL -6 485 90 1099 256 62 6 chr9 31994326 31994688 -85867939 + L1ME LINE L1 5237 5618 -552 186 133 0 0 chr9 31995113 31995143 -85867484 + (TTTC)n Simple_repeat Simple_repeat 1 30 0 2118 124 12 0 chr9 31995941 31996263 -85866364 + MLT1B LTR MaLR 61 386 -4 230 300 0 0 chr9 31996837 31996897 -85865730 + (TG)n Simple_repeat Simple_repeat 2 61 0 1922 139 0 17 chr9 31998173 31998475 -85864152 - AluSx SINE Alu -3 309 13 192 77 0 0 chr9 31998519 31998545 -85864082 + (TCCC)n Simple_repeat Simple_repeat 2 27 0 253 254 315 22 chr9 31999599 31999780 -85862847 - MIR SINE MIR -14 248 15 562 304 119 29 chr9 31999894 32000437 -85862190 - L1ME4a LINE L1 -266 5855 5277 228 364 45 9 chr9 32000587 32000697 -85861930 - L2 LINE L2 -648 2666 2553 295 350 43 21 chr9 32000709 32000895 -85861732 - L2 LINE L2 -1285 2029 1840 213 292 99 109 chr9 32001181 32001373 -85861254 + L2 LINE L2 2632 2821 -493 1621 179 3 30 chr9 32001919 32002216 -85860411 + AluJo SINE Alu 1 289 -23 334 303 126 11 chr9 32002506 32002681 -85859946 - MIR SINE MIR -4 258 64 1505 192 8 142 chr9 32002956 32003435 -85859192 + L1MD2 LINE L1 5309 5723 -636 332 188 18 170 chr9 32003536 32003701 -85858926 + L1MD2 LINE L1 6081 6335 -22 344 259 108 76 chr9 32003868 32004053 -85858574 + MIR3 SINE MIR 8 198 -10 260 257 76 29 chr9 32004399 32004504 -85858123 + MIR SINE MIR 59 168 -94 1557 192 76 21 chr9 32004943 32005324 -85857303 - LTR52 LTR ERVL -2 419 18 267 213 0 0 chr9 32005697 32005758 -85856869 - MLT2A1 LTR ERVL -149 295 235 218 351 191 31 chr9 32005895 32006340 -85856287 - L2 LINE L2 -646 2668 2153 240 174 22 0 chr9 32006539 32006585 -85856042 - Tigger4(Zombi) DNA MER2_type 0 2731 2685 1301 238 4 0 chr9 32006587 32006864 -85855763 + AluJb SINE Alu 13 290 -22 342 196 236 0 chr9 32006881 32007029 -85855598 - Tigger4(Zombi) DNA MER2_type -43 2688 2506 263 308 88 50 chr9 32007213 32007395 -85855232 + MLT1J2 LTR MaLR 256 444 -6 217 267 107 61 chr9 32007817 32007948 -85854679 + L2 LINE L2 2456 2592 -722 263 329 102 0 chr9 32008002 32008139 -85854488 + L2 LINE L2 2862 3012 -260 1064 281 58 32 chr9 32008391 32008990 -85853637 + HAL1 LINE L1 1150 1764 -743 425 267 75 80 chr9 32009282 32009741 -85852886 + L1ME2 LINE L1 4588 5026 -1200 1910 140 0 34 chr9 32009741 32010060 -85852567 + AluSx SINE Alu 1 309 0 425 267 75 80 chr9 32010060 32010512 -85852115 + L1ME2 LINE L1 5026 5479 -747 28 71 0 0 chr9 32010562 32010618 -85852009 + AT_rich Low_complexity Low_complexity 1 56 0 2132 126 3 0 chr9 32010629 32010922 -85851705 - AluSq SINE Alu -19 294 1 233 204 82 41 chr9 32010957 32011055 -85851572 + L1ME2 LINE L1 5538 5639 -482 2480 58 0 6 chr9 32011173 32011503 -85851124 + L1P LINE L1 3735 4062 -2084 5010 122 38 40 chr9 32011503 32012402 -85850225 - MER11D LTR ERVK 0 897 1 9442 91 27 1 chr9 32012402 32013979 -85848648 + L1P4 LINE L1 4057 5681 -493 730 254 30 57 chr9 32014269 32014603 -85848024 + L1ME2 LINE L1 5839 6163 -1 2288 101 13 0 chr9 32016853 32017161 -85845466 - AluSx SINE Alu 0 312 1 23 0 0 0 chr9 32017251 32017274 -85845353 + AT_rich Low_complexity Low_complexity 1 23 0 210 71 0 0 chr9 32017662 32017690 -85844937 + (TTA)n Simple_repeat Simple_repeat 1 28 0 520 252 34 63 chr9 32018380 32018586 -85844041 - L1MC4 LINE L1 -1170 6872 6673 236 307 43 49 chr9 32018827 32018990 -85843637 - L1M4 LINE L1 -1999 4147 3986 4921 157 12 26 chr9 32019055 32019112 -85843515 - L1MA4 LINE L1 0 6300 6244 2253 109 0 0 chr9 32019112 32019416 -85843211 - AluSq SINE Alu -9 304 1 4921 157 12 26 chr9 32019416 32020321 -85842306 - L1MA4 LINE L1 -56 6244 5351 979 291 94 26 chr9 32020339 32021614 -85841013 - L1M4 LINE L1 -2316 3830 2469 359 355 15 21 chr9 32021863 32022012 -85840615 - MIR3 SINE MIR -40 168 19 3968 210 45 18 chr9 32022245 32023084 -85839543 + MER21B LTR ERV1 1 862 -1 240 211 0 0 chr9 32023958 32024029 -85838598 + CT-rich Low_complexity Low_complexity 2 72 0 218 81 27 0 chr9 32024381 32024418 -85838209 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 281 192 20 26 chr9 32025169 32025252 -85837375 + MLT1G LTR MaLR 464 590 0 180 0 0 0 chr9 32025283 32025303 -85837324 + (CAAAAA)n Simple_repeat Simple_repeat 5 24 0 290 323 45 0 chr9 32026104 32026237 -85836390 + L1ME2 LINE L1 5452 5590 -574 2449 117 3 0 chr9 32026251 32026603 -85836024 - THE1A LTR MaLR 0 355 3 10887 109 29 5 chr9 32026610 32028147 -85834480 - THE1A-int LTR MaLR -6 1574 1 1722 69 0 2 chr9 32028147 32028436 -85834191 - THE1A LTR MaLR 0 355 1 758 257 66 68 chr9 32028438 32028862 -85833765 + L1ME2 LINE L1 5601 6023 -141 804 57 24 0 chr9 32028906 32029029 -85833598 + (TAGA)n Simple_repeat Simple_repeat 4 129 0 377 315 66 69 chr9 32029078 32029383 -85833244 + L1ME LINE L1 1368 1671 -4869 1077 281 68 5 chr9 32029594 32029969 -85832658 + L1ME LINE L1 5708 6117 -441 1828 73 0 12 chr9 32029969 32030215 -85832412 - L1PA8 LINE L1 -6 6166 5924 1077 281 68 5 chr9 32030215 32030283 -85832344 + L1ME LINE L1 6117 6179 -379 29 47 0 0 chr9 32030416 32030459 -85832168 + AT_rich Low_complexity Low_complexity 1 43 0 247 369 46 8 chr9 32030541 32030671 -85831956 - L2 LINE L2 0 3313 3179 281 346 171 26 chr9 32034099 32034590 -85828037 + L2 LINE L2 1000 1561 -1753 349 278 19 49 chr9 32034883 32034958 -85827669 + LTR43 LTR ERV1 135 211 -391 3839 131 18 5 chr9 32034958 32035559 -85827068 - MER4B LTR ERV1 0 610 2 349 278 19 49 chr9 32035559 32035645 -85826982 + LTR43 LTR ERV1 211 291 -311 260 296 69 94 chr9 32036143 32036252 -85826375 - MIR SINE MIR -18 244 141 3230 139 11 19 chr9 32036252 32036783 -85825844 - MER1A DNA MER1_type 0 527 1 260 296 69 94 chr9 32036783 32036876 -85825751 - MIR SINE MIR -121 141 47 25 75 0 0 chr9 32037511 32037564 -85825063 + AT_rich Low_complexity Low_complexity 1 53 0 1610 199 38 0 chr9 32037570 32037862 -85824765 - AluJo SINE Alu -8 304 2 233 196 36 0 chr9 32038582 32038638 -85823989 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 189 411 11 0 chr9 32039861 32039951 -85822676 + L2 LINE L2 3180 3270 -2 229 283 0 0 chr9 32040270 32040330 -85822297 + (TATATG)n Simple_repeat Simple_repeat 1 60 0 213 39 0 0 chr9 32040607 32040633 -85821994 + (GA)n Simple_repeat Simple_repeat 1 26 0 5431 176 29 18 chr9 32040671 32041734 -85820893 - L1MC1 LINE L1 0 6333 5255 309 291 71 0 chr9 32041980 32042107 -85820520 + MER69 DNA AcHobo 433 568 -1958 883 255 139 19 chr9 32042127 32042543 -85820084 + MER69 DNA AcHobo 2035 2500 -26 217 274 151 0 chr9 32044834 32044907 -85817720 - L2 LINE L2 0 3313 3230 1575 329 137 18 chr9 32045025 32046072 -85816555 - L2 LINE L2 -259 3054 1876 355 265 54 48 chr9 32046110 32046257 -85816370 - MLT1H LTR MaLR -399 150 3 1652 238 35 42 chr9 32046311 32046829 -85815798 + L1ME1 LINE L1 5388 5901 -265 573 236 51 19 chr9 32046934 32047091 -85815536 + L1ME1 LINE L1 5871 6032 -134 237 264 72 24 chr9 32047221 32047346 -85815281 + L1M4 LINE L1 3326 3456 -2690 197 65 32 0 chr9 32048736 32048767 -85813860 + (GAAAA)n Simple_repeat Simple_repeat 2 33 0 582 288 55 64 chr9 32048767 32049583 -85813044 + L1M4 LINE L1 3437 4245 -1901 2617 181 7 44 chr9 32049638 32050206 -85812421 - MER44D DNA MER2_type 0 605 4 306 331 59 35 chr9 32050961 32051130 -85811497 + MLT1I LTR MaLR 74 246 -163 26 30 0 0 chr9 32052137 32052170 -85810457 + AT_rich Low_complexity Low_complexity 1 33 0 234 319 28 0 chr9 32052492 32052564 -85810063 - MIR SINE MIR -133 129 56 23 0 0 0 chr9 32053220 32053243 -85809384 + AT_rich Low_complexity Low_complexity 1 23 0 459 317 55 0 chr9 32053650 32053814 -85808813 - MIR SINE MIR 0 262 90 1481 216 14 11 chr9 32054497 32054784 -85807843 - LTR57 LTR ERVL -42 369 82 456 239 60 0 chr9 32054804 32054938 -85807689 + L1MA7 LINE L1 6147 6288 -3 22 56 0 0 chr9 32054938 32054974 -85807653 + AT_rich Low_complexity Low_complexity 1 36 0 43122 46 2 1 chr9 32056943 32063096 -85799531 + L1PA3 LINE L1 1 6155 0 315 148 26 3 chr9 32063366 32063423 -85799204 - L1MA1 LINE L1 -156 6146 6082 576 126 0 21 chr9 32063423 32063501 -85799126 + L1MA3 LINE L1 6203 6295 -10 315 148 26 3 chr9 32063501 32063518 -85799109 - L1MA1 LINE L1 -220 6082 6067 281 291 74 29 chr9 32063905 32064080 -85798547 + L1ME LINE L1 5598 5780 -341 31 0 0 0 chr9 32064876 32064907 -85797720 + AT_rich Low_complexity Low_complexity 1 31 0 956 265 133 88 chr9 32065657 32065976 -85796651 + MLT1E LTR MaLR 1 357 -236 260 27 27 0 chr9 32065976 32066013 -85796614 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 956 265 133 88 chr9 32066013 32066259 -85796368 + MLT1E LTR MaLR 357 591 -2 2293 75 3 3 chr9 32067097 32067405 -85795222 + AluSx SINE Alu 5 312 0 21 36 0 0 chr9 32067405 32067433 -85795194 + AT_rich Low_complexity Low_complexity 1 28 0 29 47 0 0 chr9 32067744 32067787 -85794840 + AT_rich Low_complexity Low_complexity 1 43 0 21 57 0 0 chr9 32067897 32067932 -85794695 + AT_rich Low_complexity Low_complexity 1 35 0 22 56 0 0 chr9 32068159 32068195 -85794432 + AT_rich Low_complexity Low_complexity 1 36 0 742 286 108 25 chr9 32068414 32068813 -85793814 + MLT1J1 LTR MaLR 1 432 -14 28 0 0 0 chr9 32069148 32069176 -85793451 + AT_rich Low_complexity Low_complexity 1 28 0 1204 186 17 24 chr9 32069724 32070020 -85792607 - L1MA9 LINE L1 0 6312 6019 4742 185 23 26 chr9 32070060 32071385 -85791242 - L1MA9 LINE L1 -515 5776 4457 623 313 155 34 chr9 32072653 32073091 -85789536 + L2 LINE L2 2823 3313 0 238 189 54 72 chr9 32074761 32074872 -85787755 - L1M4 LINE L1 -2160 3986 3878 252 329 105 49 chr9 32074928 32075253 -85787374 + L1ME3A LINE L1 5594 5936 -234 21 95 0 0 chr9 32075474 32075537 -85787090 + AT_rich Low_complexity Low_complexity 1 63 0 333 253 0 33 chr9 32075714 32075805 -85786822 + L2 LINE L2 3182 3269 -3 611 63 0 0 chr9 32076994 32077073 -85785554 - MADE1 DNA Mariner -1 79 1 24 32 0 0 chr9 32077850 32077881 -85784746 + AT_rich Low_complexity Low_complexity 1 31 0 447 323 82 32 chr9 32078192 32078471 -85784156 + LTR16C LTR ERVL 188 480 -11 2401 179 100 26 chr9 32078549 32079079 -85783548 - MER101B LTR ERV1 -1 569 1 276 259 82 52 chr9 32079205 32079340 -85783287 + L2 LINE L2 2897 3035 -237 27 62 0 0 chr9 32079568 32079616 -85783011 + AT_rich Low_complexity Low_complexity 1 48 0 183 186 0 0 chr9 32079962 32080005 -85782622 + (TG)n Simple_repeat Simple_repeat 1 43 0 763 288 23 0 chr9 32081280 32081499 -85781128 + MER58A DNA MER1_type 1 224 0 1073 153 86 10 chr9 32081537 32081746 -85780881 - MSTA LTR MaLR -203 225 1 1137 213 66 41 chr9 32081751 32082317 -85780310 + L1M1 LINE L1 3210 3787 -3778 * 1747 203 44 5 chr9 32082308 32082692 -85779935 + L1M1 LINE L1 5258 5656 -1909 21 0 0 0 chr9 32084015 32084036 -85778591 + AT_rich Low_complexity Low_complexity 1 21 0 309 240 177 0 chr9 32084515 32084611 -85778016 + L1ME LINE L1 5486 5598 -568 285 316 66 26 chr9 32086939 32087091 -85775536 + MIR SINE MIR 105 262 0 189 147 0 0 chr9 32087121 32087155 -85775472 + (TAG)n Simple_repeat Simple_repeat 2 35 0 793 248 92 50 chr9 32087201 32087604 -85775023 + LTR52 LTR ERVL 2 421 0 1421 286 69 15 chr9 32087612 32088091 -85774536 + LTR52-int LTR ERVL 2 506 -3050 206 310 0 0 chr9 32088091 32088162 -85774465 + A-rich Low_complexity Low_complexity 1 71 0 1193 209 24 37 chr9 32088469 32088757 -85773870 - MLT2B3 LTR ERVL -5 549 266 6533 184 62 65 chr9 32088757 32090406 -85772221 + MER52A LTR ERV1 1 1755 0 976 210 25 22 chr9 32090441 32090701 -85771926 - MLT2B3 LTR ERVL -201 252 1 352 164 0 0 chr9 32090973 32091034 -85771593 + LTR52-int LTR ERVL 3496 3556 0 648 280 103 45 chr9 32091036 32091432 -85771195 + LTR52 LTR ERVL 3 421 0 258 232 34 45 chr9 32091843 32092020 -85770607 + (TA)n Simple_repeat Simple_repeat 1 175 0 22 56 0 0 chr9 32093038 32093074 -85769553 + AT_rich Low_complexity Low_complexity 1 36 0 192 323 129 26 chr9 32093515 32093670 -85768957 + MIR SINE MIR 78 248 -14 29 28 0 0 chr9 32093714 32093750 -85768877 + AT_rich Low_complexity Low_complexity 1 36 0 260 295 95 0 chr9 32094276 32094371 -85768256 + MLT1I LTR MaLR 252 355 -54 6749 236 45 32 chr9 32094577 32095110 -85767517 - L1MC1 LINE L1 0 7144 6619 2350 49 0 0 chr9 32095110 32095420 -85767207 + AluY SINE Alu 1 310 0 6749 236 45 32 chr9 32095420 32098198 -85764429 - L1MC1 LINE L1 -525 6619 3690 1992 148 101 3 chr9 32098202 32098567 -85764060 - L1PA16 LINE L1 -22 6144 5744 325 150 30 158 chr9 32098549 32098603 -85764024 + L1P4 LINE L1 5632 5661 -505 * 1565 187 17 23 chr9 32098603 32098903 -85763724 + AluJb SINE Alu 2 299 -13 325 150 30 158 chr9 32098903 32098981 -85763646 + L1P4 LINE L1 5661 5747 -419 * 1615 272 51 23 chr9 32098974 32099755 -85762872 - L1MC1 LINE L1 -3254 3703 2939 358 286 71 8 chr9 32100235 32100353 -85762274 - MLT1J LTR MaLR -287 198 42 22 0 0 0 chr9 32100843 32100865 -85761762 + AT_rich Low_complexity Low_complexity 1 22 0 1402 246 62 74 chr9 32101172 32102035 -85760592 - L1MC1 LINE L1 -4767 2192 1343 223 146 100 0 chr9 32102058 32102168 -85760459 + (TA)n Simple_repeat Simple_repeat 2 122 0 341 253 100 53 chr9 32102171 32102321 -85760306 - L1MC1 LINE L1 -5499 1360 1204 1452 330 62 17 chr9 32102906 32103487 -85759140 - L1MC1 LINE L1 -5980 879 273 1321 237 30 25 chr9 32103490 32103857 -85758770 - MLT1A2 LTR MaLR 0 374 6 1940 230 38 2 chr9 32103862 32104280 -85758347 - MLT1A2-int LTR MaLR 0 1735 1303 235 224 0 92 chr9 32104281 32104357 -85758270 + MLT-int LTR MaLR 943 1011 -724 27 0 0 0 chr9 32105530 32105557 -85757070 + AT_rich Low_complexity Low_complexity 1 27 0 2345 60 0 0 chr9 32105601 32105920 -85756707 - AluY SINE Alu 0 319 1 229 250 50 0 chr9 32106108 32106168 -85756459 + MLT1J1 LTR MaLR 269 331 -115 557 320 73 43 chr9 32106530 32107090 -85755537 + L1M4 LINE L1 57 633 -5909 1771 351 79 23 chr9 32107594 32108742 -85753885 + L2 LINE L2 1790 2998 -315 257 385 0 56 chr9 32108781 32108976 -85753651 + MER5A DNA MER1_type 6 189 0 23 33 0 0 chr9 32109192 32109222 -85753405 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr9 32111042 32111072 -85751555 + AT_rich Low_complexity Low_complexity 1 30 0 2123 139 12 14 chr9 32111196 32111540 -85751087 + MER61A LTR ERV1 1 343 0 2710 189 74 104 chr9 32111540 32112341 -85750286 + MER61A-int LTR ERV1 1 777 -4440 * 3219 111 18 14 chr9 32112334 32112883 -85749744 + MER61A-int LTR ERV1 1320 1917 -3300 * 16559 101 10 13 chr9 32112879 32115580 -85747047 + MER61A-int LTR ERV1 2477 5215 -2 2106 142 30 0 chr9 32115584 32115915 -85746712 + MER61A LTR ERV1 3 343 0 7578 25 3 0 chr9 32117011 32118145 -85744482 - L1PA5 LINE L1 -6 6148 5012 3066 40 3 0 chr9 32118145 32118517 -85744110 + L1P LINE L1 3867 4239 -1907 399 303 32 32 chr9 32118524 32118679 -85743948 - MIR SINE MIR -74 188 34 203 414 19 19 chr9 32120573 32120730 -85741897 + L2 LINE L2 2896 3052 -261 433 124 11 11 chr9 32120916 32121005 -85741622 + (TGGA)n Simple_repeat Simple_repeat 4 92 0 2366 53 40 7 chr9 32122374 32122675 -85739952 + AluY SINE Alu 1 311 0 414 259 144 0 chr9 32123418 32123557 -85739070 + MER46C DNA MER2_type 179 337 -1 338 308 77 65 chr9 32124093 32124200 -85738427 - L1MEd LINE L1 -5096 1023 919 2171 115 16 0 chr9 32124200 32124505 -85738122 - AluSq SINE Alu -3 310 1 338 308 77 65 chr9 32124505 32124735 -85737892 - L1MEd LINE L1 -5200 919 682 1983 140 0 3 chr9 32125397 32125690 -85736937 + AluSx SINE Alu 3 294 -18 25 31 0 0 chr9 32126477 32126509 -85736118 + AT_rich Low_complexity Low_complexity 1 32 0 2285 177 14 23 chr9 32127065 32127500 -85735127 + Tigger2a DNA MER2_type 1 431 -3 1504 153 102 28 chr9 32127693 32128052 -85734575 - Tigger3(Golem) DNA MER2_type -1 3028 1 26 0 0 0 chr9 32128149 32128175 -85734452 + AT_rich Low_complexity Low_complexity 1 26 0 398 329 81 6 chr9 32128343 32128504 -85734123 + LTR33 LTR ERVL 10 182 -339 314 334 89 44 chr9 32128995 32129333 -85733294 + L2 LINE L2 2346 2698 -616 1941 80 98 4 chr9 32131873 32132148 -85730479 + AluSq SINE Alu 1 301 -12 1059 296 101 52 chr9 32132621 32133358 -85729269 - L1M4 LINE L1 -1836 4310 3611 2386 46 0 0 chr9 32133358 32133669 -85728958 + AluY SINE Alu 1 311 0 1059 296 101 52 chr9 32133669 32134499 -85728128 - L1M4 LINE L1 -2535 3611 2665 284 333 0 0 chr9 32134518 32134632 -85727995 - L1M4 LINE L1 -3551 2595 2482 880 315 50 0 chr9 32134636 32134915 -85727712 - LTR16A LTR ERVL 0 450 158 538 300 82 25 chr9 32135029 32135382 -85727245 - L1M4 LINE L1 -3661 2485 2113 36 87 0 0 chr9 32135514 32135606 -85727021 + AT_rich Low_complexity Low_complexity 1 92 0 273 143 0 0 chr9 32136044 32136093 -85726534 - L1PA10 LINE L1 -1100 5046 4998 6382 91 17 0 chr9 32136094 32137200 -85725427 + L1PA10 LINE L1 5048 6168 0 22 0 0 0 chr9 32137271 32137293 -85725334 + AT_rich Low_complexity Low_complexity 1 22 0 1836 179 60 45 chr9 32137301 32137786 -85724841 + LTR22B LTR ERVK 1 492 0 10885 217 30 16 chr9 32137931 32140117 -85722510 - L1PA15 LINE L1 -3 6813 4659 2100 88 9 44 chr9 32140117 32140437 -85722190 - AluSc SINE Alu 0 309 1 10885 217 30 16 chr9 32140437 32140708 -85721919 - L1PA15 LINE L1 -2157 4659 4393 423 0 0 0 chr9 32140708 32140755 -85721872 + (TG)n Simple_repeat Simple_repeat 2 48 0 10885 217 30 16 chr9 32140755 32143834 -85718793 - L1PA15 LINE L1 -2423 4393 1189 28 0 0 0 chr9 32144382 32144410 -85718217 + AT_rich Low_complexity Low_complexity 1 28 0 23 68 0 0 chr9 32144587 32144631 -85717996 + AT_rich Low_complexity Low_complexity 1 44 0 356 321 87 46 chr9 32144749 32145052 -85717575 + L1ME LINE L1 5257 5574 -590 1014 101 0 0 chr9 32145146 32145285 -85717342 - AluSg/x SINE Alu 0 312 174 1757 153 0 0 chr9 32145285 32145547 -85717080 - AluSx SINE Alu -48 264 3 303 304 46 0 chr9 32145550 32145676 -85716951 + L1ME LINE L1 5701 5831 -347 636 206 71 0 chr9 32145743 32145869 -85716758 - Tigger2 DNA MER2_type -11 2707 2573 63 57 0 0 chr9 32145869 32145974 -85716653 + AT_rich Low_complexity Low_complexity 1 105 0 1157 189 97 23 chr9 32146005 32146264 -85716363 - Tigger2 DNA MER2_type -150 2568 2291 273 213 0 93 chr9 32146267 32146342 -85716285 - Tigger2 DNA MER2_type -2650 68 1 180 0 0 0 chr9 32148229 32148249 -85714378 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 351 60 0 0 chr9 32148594 32148644 -85713983 + (CA)n Simple_repeat Simple_repeat 2 51 0 502 330 76 39 chr9 32148644 32149127 -85713500 - HERV16 LTR ERVL -1462 3570 3142 452 305 8 8 chr9 32149380 32149508 -85713119 - HERV16 LTR ERVL -3195 1801 1674 296 179 0 0 chr9 32149511 32149578 -85713049 - L1PA16 LINE L1 -1 6165 6099 637 336 47 45 chr9 32149659 32150215 -85712412 - HERV16 LTR ERVL -3502 1494 938 291 398 31 0 chr9 32150425 32150621 -85712006 - HERV16 LTR ERVL -4332 664 463 681 267 30 72 chr9 32151601 32151964 -85710663 - MLT1C LTR MaLR -114 353 6 440 318 4 64 chr9 32152025 32152258 -85710369 - L1ME LINE L1 -5842 228 10 199 297 27 0 chr9 32152325 32152399 -85710228 + MER5A DNA MER1_type 37 112 -77 230 180 16 0 chr9 32152768 32152829 -85709798 + (TTA)n Simple_repeat Simple_repeat 3 64 0 529 86 21 0 chr9 32153566 32153659 -85708968 + (TCTA)n Simple_repeat Simple_repeat 3 97 0 388 256 17 61 chr9 32154272 32154452 -85708175 + L1MC5 LINE L1 7730 7901 -60 201 342 18 18 chr9 32154528 32154642 -85707985 + L2 LINE L2 2458 2571 -743 225 85 34 34 chr9 32154836 32154895 -85707732 + (TTATA)n Simple_repeat Simple_repeat 1 59 0 357 93 0 0 chr9 32154953 32155007 -85707620 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 269 155 17 0 chr9 32155050 32155108 -85707519 + (TA)n Simple_repeat Simple_repeat 2 60 0 583 350 78 69 chr9 32155227 32156099 -85706528 + L2 LINE L2 2375 3269 -44 1277 203 11 36 chr9 32156103 32156384 -85706243 + AluJo SINE Alu 21 294 -18 59 38 0 0 chr9 32156549 32156629 -85705998 + AT_rich Low_complexity Low_complexity 1 80 0 513 215 0 0 chr9 32156629 32156863 -85705764 + (TA)n Simple_repeat Simple_repeat 1 234 0 361 147 16 54 chr9 32157164 32157348 -85705279 + (TATAA)n Simple_repeat Simple_repeat 1 177 0 268 260 158 0 chr9 32157565 32157692 -85704935 + LTR37A LTR ERV1 81 227 -199 542 273 53 0 chr9 32157729 32157916 -85704711 + LTR37A LTR ERV1 225 421 -5 1801 222 126 54 chr9 32158198 32158883 -85703744 + MER50 LTR ERV1 1 734 0 1686 176 3 0 chr9 32159442 32159746 -85702881 - AluJb SINE Alu 0 307 3 864 237 73 40 chr9 32160190 32160464 -85702163 - MLT1D LTR MaLR -7 498 216 438 198 25 0 chr9 32160478 32160575 -85702052 - MLT1D LTR MaLR -398 107 5 22 70 0 0 chr9 32160742 32160785 -85701842 + AT_rich Low_complexity Low_complexity 1 43 0 871 212 64 134 chr9 32161392 32161799 -85700828 - MLT1C LTR MaLR -4 448 11 23 0 0 0 chr9 32161983 32162006 -85700621 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr9 32162274 32162299 -85700328 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr9 32163482 32163505 -85699122 + AT_rich Low_complexity Low_complexity 1 23 0 1960 171 16 60 chr9 32163612 32163652 -85698975 - MLT2D LTR ERVL 0 414 374 303 28 0 0 chr9 32163652 32163688 -85698939 + (TG)n Simple_repeat Simple_repeat 1 36 0 1960 171 16 60 chr9 32163688 32164080 -85698547 - MLT2D LTR ERVL -40 374 1 1842 253 23 7 chr9 32164236 32164679 -85697948 - MER82 DNA MER2_type -8 645 196 198 103 0 0 chr9 32164704 32164733 -85697894 + (CA)n Simple_repeat Simple_repeat 1 29 0 1122 203 0 0 chr9 32164733 32164930 -85697697 - MER82 DNA MER2_type -450 203 7 641 304 121 48 chr9 32165711 32166208 -85696419 - MLT1H LTR MaLR 0 549 17 220 255 0 0 chr9 32167716 32167767 -85694860 + (TCCA)n Simple_repeat Simple_repeat 3 53 0 24 0 0 0 chr9 32168261 32168285 -85694342 + AT_rich Low_complexity Low_complexity 1 24 0 3645 159 12 37 chr9 32168753 32170068 -85692559 - L1MA4 LINE L1 -311 5989 4704 1026 244 93 4 chr9 32170282 32170528 -85692099 - MLT1A1 LTR MaLR -95 270 3 1094 244 80 14 chr9 32170787 32171074 -85691553 + MLT1A1 LTR MaLR 57 362 -3 2986 95 18 14 chr9 32172240 32172682 -85689945 - MLT2A1 LTR ERVL 0 444 1 700 230 17 91 chr9 32173227 32173457 -85689170 - MER20 DNA MER1_type 0 219 7 230 260 0 0 chr9 32174018 32174068 -85688559 + (TATATG)n Simple_repeat Simple_repeat 2 51 0 200 111 0 28 chr9 32174483 32174519 -85688108 + (GAAAA)n Simple_repeat Simple_repeat 2 36 0 401 239 120 85 chr9 32174680 32174939 -85687688 + L1MC4 LINE L1 7739 8006 -36 1039 203 4 22 chr9 32174944 32175171 -85687456 - AluJo SINE Alu -6 306 84 3442 198 66 42 chr9 32175211 32176089 -85686538 + L1MB3 LINE L1 5285 6183 0 814 195 115 102 chr9 32176372 32176756 -85685871 + MLT1C LTR MaLR 1 389 -1 491 133 0 0 chr9 32177018 32177093 -85685534 + MADE1 DNA Mariner 1 75 -5 213 39 0 0 chr9 32177595 32177621 -85685006 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 346 347 62 14 chr9 32180365 32180509 -85682118 + MIR3 SINE MIR 45 195 -13 397 288 31 56 chr9 32181545 32181705 -85680922 - MIR SINE MIR -28 234 79 21 0 0 0 chr9 32181777 32181798 -85680829 + AT_rich Low_complexity Low_complexity 1 21 0 236 250 28 14 chr9 32181893 32181965 -85680662 + (TATG)n Simple_repeat Simple_repeat 2 74 0 244 363 0 52 chr9 32182758 32182893 -85679734 - MIR SINE MIR -129 133 6 23 0 0 0 chr9 32183609 32183632 -85678995 + AT_rich Low_complexity Low_complexity 1 23 0 2197 132 92 2 chr9 32185215 32185608 -85677019 - MSTA LTR MaLR 0 428 1 2020 204 52 2 chr9 32185749 32186155 -85676472 - MSTB LTR MaLR 0 426 1 348 325 83 40 chr9 32186258 32186560 -85676067 + L1MC4 LINE L1 7722 8036 -6 346 286 118 16 chr9 32186575 32186820 -85675807 + L1MC5 LINE L1 7508 7777 -184 256 333 0 0 chr9 32187130 32187205 -85675422 - MIR SINE MIR -127 135 61 295 368 46 62 chr9 32187208 32187515 -85675112 - MLT1I LTR MaLR -107 302 1 21 0 0 0 chr9 32187797 32187818 -85674809 + AT_rich Low_complexity Low_complexity 1 21 0 236 299 30 15 chr9 32188225 32188292 -85674335 - L2 LINE L2 -19 3253 3186 33 32 0 32 chr9 32189407 32189440 -85673187 + AT_rich Low_complexity Low_complexity 1 33 -27 2048 130 7 0 chr9 32189440 32189733 -85672894 + AluSx SINE Alu 1 295 -17 33 32 0 32 chr9 32189733 32189761 -85672866 + AT_rich Low_complexity Low_complexity 33 60 0 1522 213 52 56 chr9 32190047 32190074 -85672553 + MLT1C LTR MaLR 1 27 -440 261 0 0 0 chr9 32190074 32190103 -85672524 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 1522 213 52 56 chr9 32190103 32190167 -85672460 + MLT1C LTR MaLR 27 90 -377 1596 221 34 0 chr9 32190167 32190520 -85672107 - MLT1A1 LTR MaLR 0 365 1 1522 213 52 56 chr9 32190520 32190892 -85671735 + MLT1C LTR MaLR 90 463 -4 31 26 0 0 chr9 32191331 32191369 -85671258 + AT_rich Low_complexity Low_complexity 1 38 0 31 92 0 0 chr9 32191772 32191859 -85670768 + AT_rich Low_complexity Low_complexity 1 87 0 24 0 0 0 chr9 32192202 32192226 -85670401 + AT_rich Low_complexity Low_complexity 1 24 0 1397 226 34 0 chr9 32192354 32192651 -85669976 + AluJb SINE Alu 1 307 -5 252 59 0 0 chr9 32192654 32192688 -85669939 + (GGAA)n Simple_repeat Simple_repeat 4 37 0 311 265 114 30 chr9 32192976 32193108 -85669519 + MLT1K LTR MaLR 165 307 -281 262 282 0 24 chr9 32194370 32194455 -85668172 + Charlie7 DNA MER1_type 23 105 -2507 3125 158 68 10 chr9 32195022 32195612 -85667015 + L1PA16 LINE L1 5543 6166 0 398 396 7 0 chr9 32196350 32196489 -85666138 + L2 LINE L2 3123 3262 -10 470 339 113 17 chr9 32199549 32199788 -85662839 - L2 LINE L2 -537 2777 2516 305 275 11 22 chr9 32200308 32200391 -85662236 - L1MC4 LINE L1 -1339 6703 6620 189 0 0 0 chr9 32200391 32200412 -85662215 + (CA)n Simple_repeat Simple_repeat 2 22 0 6174 150 65 9 chr9 32200540 32201703 -85660924 - Tigger3b DNA MER2_type -2 1229 1 24 0 0 0 chr9 32201819 32201843 -85660784 + AT_rich Low_complexity Low_complexity 1 24 0 5741 108 35 1 chr9 32201843 32203510 -85659117 + L1PA11 LINE L1 4462 6166 -8 6273 174 119 93 chr9 32203635 32205328 -85657299 + MER52A LTR ERV1 2 1739 -16 186 103 0 0 chr9 32205424 32205453 -85657174 + (TA)n Simple_repeat Simple_repeat 2 30 0 337 270 72 7 chr9 32205466 32205618 -85657009 - L1MEc LINE L1 -2471 3744 3583 406 228 49 0 chr9 32205638 32205800 -85656827 + (TA)n Simple_repeat Simple_repeat 1 170 0 1168 265 58 51 chr9 32205839 32206669 -85655958 - L1MEc LINE L1 -2673 3542 2707 1598 295 61 7 chr9 32206699 32207601 -85655026 - L1MEc LINE L1 -3705 2510 1587 843 276 70 47 chr9 32207610 32208055 -85654572 + MLT1C LTR MaLR 9 463 -4 2700 276 72 55 chr9 32208097 32209617 -85653010 - L1MEc LINE L1 -4815 1581 37 891 192 129 17 chr9 32210013 32210300 -85652327 + MER33 DNA MER1_type 6 324 0 481 251 153 16 chr9 32210332 32210515 -85652112 - MER58A DNA MER1_type -15 209 2 365 333 69 0 chr9 32210562 32210721 -85651906 + MLT1J LTR MaLR 336 505 -6 192 97 0 0 chr9 32211308 32211339 -85651288 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 7534 25 0 0 chr9 32211339 32212467 -85650160 - L1PA3 LINE L1 -6 6149 5016 204 232 84 74 chr9 32212771 32212866 -85649761 - MIR SINE MIR -68 194 99 22 0 0 0 chr9 32213790 32213812 -85648815 + AT_rich Low_complexity Low_complexity 1 22 0 369 245 0 0 chr9 32213968 32214070 -85648557 + (TA)n Simple_repeat Simple_repeat 2 103 0 26 30 0 0 chr9 32214262 32214295 -85648332 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr9 32215426 32215447 -85647180 + AT_rich Low_complexity Low_complexity 1 21 0 1007 245 60 10 chr9 32215461 32215759 -85646868 + L1MCa LINE L1 1288 1600 -4826 1518 211 63 16 chr9 32215874 32216050 -85646577 + MLT1B LTR MaLR 1 167 -223 261 0 0 0 chr9 32216050 32216079 -85646548 + (TC)n Simple_repeat Simple_repeat 2 30 0 1518 211 63 16 chr9 32216079 32216267 -85646360 + MLT1B LTR MaLR 167 382 -8 7581 25 2 0 chr9 32216290 32217732 -85644895 + L1PA3 LINE L1 4709 6152 -3 277 49 0 49 chr9 32217794 32217835 -85644792 + THE1B LTR MaLR 1 39 -325 206 62 31 0 chr9 32217835 32217867 -85644760 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 250 103 11 69 chr9 32217873 32217960 -85644667 + (TATAA)n Simple_repeat Simple_repeat 5 86 0 12897 212 97 14 chr9 32217979 32223088 -85639539 - L1PBa LINE L1 -1113 5749 60 3794 150 79 15 chr9 32223056 32223716 -85638911 - THE1-int LTR MaLR -623 957 256 * 3083 230 88 19 chr9 32224241 32224977 -85637650 + L1MD2 LINE L1 5352 6036 -1749 243 0 0 0 chr9 32224977 32225004 -85637623 + (CA)n Simple_repeat Simple_repeat 2 28 0 3083 230 88 19 chr9 32225004 32225174 -85637453 + L1MD2 LINE L1 6036 7747 -38 28 116 0 0 chr9 32225484 32225631 -85636996 + AT_rich Low_complexity Low_complexity 1 147 0 188 268 0 0 chr9 32225718 32225759 -85636868 + L2 LINE L2 3189 3229 -84 24 77 0 0 chr9 32226471 32226523 -85636104 + AT_rich Low_complexity Low_complexity 1 52 0 1112 246 56 34 chr9 32227072 32227429 -85635198 + MLT1A1 LTR MaLR 1 365 0 2790 269 91 26 chr9 32227431 32228593 -85634034 + L1MEc LINE L1 34 1271 -5125 22 80 0 0 chr9 32229571 32229621 -85633006 + AT_rich Low_complexity Low_complexity 1 50 0 408 40 0 0 chr9 32229775 32229825 -85632802 + (CA)n Simple_repeat Simple_repeat 1 50 0 250 346 31 8 chr9 32229903 32230030 -85632597 - L1ME LINE L1 -297 5824 5695 228 320 97 0 chr9 32230362 32230465 -85632162 + L2 LINE L2 3181 3293 -20 358 325 43 24 chr9 32231560 32231746 -85630881 + MIR SINE MIR 50 236 -26 22 0 0 0 chr9 32232420 32232442 -85630185 + AT_rich Low_complexity Low_complexity 1 22 0 1471 186 54 0 chr9 32232444 32232723 -85629904 + AluJb SINE Alu 1 294 -18 288 177 44 51 chr9 32232901 32233059 -85629568 + (TTTA)n Simple_repeat Simple_repeat 3 159 0 1285 277 44 22 chr9 32233375 32233950 -85628677 - MER76 LTR ERV 0 688 47 21 36 0 0 chr9 32235271 32235299 -85627328 + AT_rich Low_complexity Low_complexity 1 28 0 293 364 17 0 chr9 32235474 32235647 -85626980 - L1MD3 LINE L1 -12 7983 7808 22 0 0 0 chr9 32235659 32235681 -85626946 + AT_rich Low_complexity Low_complexity 1 22 0 523 218 58 89 chr9 32235771 32236734 -85625893 - L1MD2 LINE L1 -165 6077 5189 1898 152 53 31 chr9 32237333 32237689 -85624938 + THE1B LTR MaLR 1 364 0 10596 107 29 1 chr9 32237689 32239226 -85623401 + THE1B-int LTR MaLR 1 1580 0 1707 182 106 0 chr9 32239226 32239555 -85623072 + THE1B LTR MaLR 1 364 0 206 132 38 19 chr9 32239995 32240048 -85622579 + (TTTAA)n Simple_repeat Simple_repeat 5 58 0 21 0 0 0 chr9 32240476 32240497 -85622130 + AT_rich Low_complexity Low_complexity 1 21 0 1200 198 14 0 chr9 32240661 32240878 -85621749 + L1PA14 LINE L1 1 220 -7361 1117 100 65 6 chr9 32240890 32241060 -85621567 + L1PA12 LINE L1 1964 2143 -5438 13274 173 13 11 chr9 32241060 32242785 -85619842 + L1PA14 LINE L1 215 1936 -5648 1551 189 73 14 chr9 32242785 32243139 -85619488 - THE1C LTR MaLR 0 375 1 13274 173 13 11 chr9 32243139 32244900 -85617727 + L1PA14 LINE L1 1936 3979 -3605 5859 116 7 2 chr9 32244900 32246319 -85616308 + L1PA14 LINE L1 6167 7599 0 1902 150 0 7 chr9 32246538 32246832 -85615795 + AluSx SINE Alu 1 292 -20 1427 143 14 10 chr9 32248659 32248953 -85613674 - L1P LINE L1 -743 5403 5109 3578 122 35 0 chr9 32248953 32249506 -85613121 + L1PA12 LINE L1 5579 6164 -4 25 65 0 0 chr9 32251088 32251134 -85611493 + AT_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr9 32252471 32252492 -85610135 + AT_rich Low_complexity Low_complexity 1 21 0 439 305 18 66 chr9 32252605 32252748 -85609879 + MIR SINE MIR 4 152 -110 1546 191 0 38 chr9 32252748 32252917 -85609710 - AluJo SINE Alu -4 308 134 230 0 33 0 chr9 32252917 32252947 -85609680 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 2302 85 0 3 chr9 32252947 32253230 -85609397 - AluSq SINE Alu -29 284 3 1546 191 0 38 chr9 32253230 32253378 -85609249 - AluJo SINE Alu -176 136 2 439 305 18 66 chr9 32253378 32253506 -85609121 + MIR SINE MIR 152 262 0 2690 206 55 26 chr9 32254029 32255228 -85607399 + L1M2 LINE L1 4295 5598 -714 38 39 0 0 chr9 32255518 32255570 -85607057 + AT_rich Low_complexity Low_complexity 1 52 0 25 31 0 0 chr9 32256493 32256525 -85606102 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr9 32257391 32257412 -85605215 + AT_rich Low_complexity Low_complexity 1 21 0 271 296 57 0 chr9 32257570 32257658 -85604969 - MIR SINE MIR -76 186 94 1806 216 7 39 chr9 32257659 32258098 -85604529 - L1MA10 LINE L1 -39 6295 5871 * 2539 195 12 51 chr9 32258097 32259005 -85603622 + L1MB1 LINE L1 4960 5836 -332 19991 54 1 12 chr9 32259010 32262403 -85600224 - L1PA4 LINE L1 0 6155 2786 8067 86 31 0 chr9 32262419 32263504 -85599123 - L1PA4 LINE L1 -5015 1131 13 2866 221 51 34 chr9 32263589 32264359 -85598268 - L1MD1 LINE L1 0 6242 5460 28515 134 13 57 chr9 32264521 32270006 -85592621 + L1PA8 LINE L1 1 5146 -1026 219 36 0 0 chr9 32270006 32270034 -85592593 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 28515 134 13 57 chr9 32270034 32271009 -85591618 + L1PA8 LINE L1 5146 6163 -9 2924 242 11 14 chr9 32271360 32272161 -85590466 + L1 LINE L1 4314 5112 -1034 1402 164 128 2 chr9 32272170 32272543 -85590084 - L1PB1 LINE L1 -700 5603 5187 2981 92 23 138 chr9 32272544 32272708 -85589919 + L1PB1 LINE L1 5611 5792 -359 324 0 0 0 chr9 32272708 32272744 -85589883 + (CA)n Simple_repeat Simple_repeat 2 37 0 497 75 21 21 chr9 32272745 32272839 -85589788 + (TA)n Simple_repeat Simple_repeat 1 94 0 2981 92 23 138 chr9 32272839 32273282 -85589345 + L1PB1 LINE L1 5791 6150 -1 2793 200 10 2 chr9 32273318 32273996 -85588631 + L1PA16 LINE L1 5106 5787 -379 9073 190 17 19 chr9 32273997 32276906 -85585721 + L1PB3 LINE L1 3261 6154 0 1922 202 18 0 chr9 32276915 32277296 -85585331 + L1PA16 LINE L1 5779 6166 0 27 49 0 0 chr9 32277800 32277841 -85584786 + AT_rich Low_complexity Low_complexity 1 41 0 1565 183 4 18 chr9 32278912 32279191 -85583436 + AluJb SINE Alu 1 275 -37 294 206 0 0 chr9 32279196 32279259 -85583368 + GA-rich Low_complexity Low_complexity 5 67 0 722 354 116 42 chr9 32279260 32279775 -85582852 - L2 LINE L2 -410 2904 2428 1516 142 36 47 chr9 32279775 32280049 -85582578 + AluSx SINE Alu 3 273 -39 722 354 116 42 chr9 32280049 32280657 -85581970 - L2 LINE L2 -886 2428 1698 300 286 103 8 chr9 32281303 32281429 -85581198 - MIR SINE MIR -122 140 3 381 391 103 26 chr9 32281504 32282118 -85580509 - L2 LINE L2 -2341 973 313 189 0 0 0 chr9 32283256 32283277 -85579350 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 1642 172 0 0 chr9 32283288 32283555 -85579072 - AluSx SINE Alu -45 267 1 247 343 0 0 chr9 32285655 32285728 -85576899 + MIR SINE MIR 82 154 -108 180 200 0 0 chr9 32285917 32285957 -85576670 + (CATATA)n Simple_repeat Simple_repeat 6 45 0 1691 162 0 45 chr9 32285985 32286111 -85576516 + AluJb SINE Alu 17 147 -165 2542 64 0 0 chr9 32286111 32286422 -85576205 + AluY SINE Alu 1 311 0 1691 162 0 45 chr9 32286422 32286603 -85576024 + AluJb SINE Alu 147 310 -2 2162 109 0 20 chr9 32288091 32288446 -85574181 - AluSx SINE Alu 0 349 1 2465 51 6 10 chr9 32288868 32289204 -85573423 + AluY SINE Alu 1 335 0 300 333 16 0 chr9 32290160 32290283 -85572344 + MIR3 SINE MIR 74 198 -10 2296 88 0 0 chr9 32291667 32291964 -85570663 - AluY SINE Alu -14 297 1 180 0 0 0 chr9 32292119 32292139 -85570488 + (A)n Simple_repeat Simple_repeat 1 20 0 141 53 0 0 chr9 32293126 32293351 -85569276 + AT_rich Low_complexity Low_complexity 1 225 0 21 36 0 0 chr9 32293591 32293619 -85569008 + AT_rich Low_complexity Low_complexity 1 28 0 1029 103 13 0 chr9 32295171 32295327 -85567300 + L1PA10 LINE L1 5995 6152 -16 25 31 0 0 chr9 32295331 32295363 -85567264 + AT_rich Low_complexity Low_complexity 1 32 0 2261 95 0 7 chr9 32295545 32295850 -85566777 - AluY SINE Alu -8 303 1 216 0 0 0 chr9 32296338 32296362 -85566265 + (CA)n Simple_repeat Simple_repeat 2 25 0 1540 189 0 21 chr9 32296506 32296787 -85565840 + AluJb SINE Alu 6 280 -32 234 0 0 0 chr9 32296787 32296813 -85565814 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 215 194 16 16 chr9 32296968 32297030 -85565597 + (TA)n Simple_repeat Simple_repeat 2 63 0 216 277 15 0 chr9 32298569 32298634 -85563993 - MIR SINE MIR -59 203 138 855 155 0 27 chr9 32298719 32298867 -85563760 + AluJo SINE Alu 9 152 -160 255 125 0 0 chr9 32298886 32298926 -85563701 + (A)n Simple_repeat Simple_repeat 1 40 0 225 178 0 0 chr9 32299550 32299595 -85563032 + LTR66 LTR ERVL 394 438 -172 345 186 10 21 chr9 32299631 32299728 -85562899 + (TA)n Simple_repeat Simple_repeat 1 96 0 209 285 16 98 chr9 32300823 32300946 -85561681 - MIR SINE MIR -12 250 138 200 246 15 46 chr9 32300983 32301048 -85561579 + L2 LINE L2 2556 2618 -696 548 295 57 9 chr9 32301491 32301701 -85560926 - L2 LINE L2 0 3313 3094 21 0 0 0 chr9 32301957 32301978 -85560649 + AT_rich Low_complexity Low_complexity 1 21 0 203 297 31 0 chr9 32302042 32302106 -85560521 + L2 LINE L2 3207 3272 0 529 287 33 15 chr9 32302429 32302697 -85559930 + L1MCa LINE L1 1662 1982 -4444 22 35 0 0 chr9 32302842 32302871 -85559756 + AT_rich Low_complexity Low_complexity 1 29 0 257 105 0 0 chr9 32303038 32303076 -85559551 + tRNA-Leu-TTG tRNA tRNA 1 38 -48 238 171 13 13 chr9 32304141 32304217 -85558410 + (TA)n Simple_repeat Simple_repeat 1 76 0 22 35 0 0 chr9 32304432 32304461 -85558166 + AT_rich Low_complexity Low_complexity 1 29 0 390 239 11 0 chr9 32304764 32304856 -85557771 - MER94 DNA DNA -41 93 1 288 0 0 0 chr9 32304982 32305014 -85557613 + (TG)n Simple_repeat Simple_repeat 2 33 0 29 60 0 0 chr9 32305184 32305234 -85557393 + AT_rich Low_complexity Low_complexity 1 50 0 216 293 0 127 chr9 32306155 32306312 -85556315 - MIR SINE MIR -77 185 49 335 184 32 165 chr9 32306786 32306944 -85555683 + MER20 DNA MER1_type 1 137 -82 1830 151 10 13 chr9 32307352 32307657 -85554970 + AluSx SINE Alu 1 304 -8 201 121 0 0 chr9 32308177 32308210 -85554417 + (A)n Simple_repeat Simple_repeat 1 33 0 21 36 0 0 chr9 32308603 32308631 -85553996 + AT_rich Low_complexity Low_complexity 1 28 0 3386 222 73 23 chr9 32309642 32310422 -85552205 + L1MD1 LINE L1 4983 5843 -399 2220 130 28 3 chr9 32310422 32310777 -85551850 - THE1B LTR MaLR 0 364 1 3386 222 73 23 chr9 32310777 32311198 -85551429 + L1MD1 LINE L1 5843 6242 0 21 36 0 0 chr9 32311292 32311320 -85551307 + AT_rich Low_complexity Low_complexity 1 28 0 1728 188 0 0 chr9 32311320 32311628 -85550999 - AluJb SINE Alu -3 309 2 21 36 0 0 chr9 32312519 32312547 -85550080 + AT_rich Low_complexity Low_complexity 1 28 0 3342 114 4 0 chr9 32313659 32314169 -85548458 - L1P LINE L1 -758 5388 4877 5008 77 36 0 chr9 32314169 32314885 -85547742 + L1PA7 LINE L1 5438 6154 0 216 255 0 0 chr9 32315834 32315885 -85546742 + (CA)n Simple_repeat Simple_repeat 2 52 0 189 0 0 0 chr9 32316802 32316823 -85545804 + (CA)n Simple_repeat Simple_repeat 2 22 0 2063 99 24 10 chr9 32317971 32318263 -85544364 - AluSx SINE Alu -16 296 1 21 0 0 0 chr9 32318903 32318924 -85543703 + AT_rich Low_complexity Low_complexity 1 21 0 2095 136 0 10 chr9 32318943 32319245 -85543382 + AluSg SINE Alu 1 299 -11 25 0 0 0 chr9 32320097 32320122 -85542505 + AT_rich Low_complexity Low_complexity 1 25 0 3135 148 45 42 chr9 32321922 32322515 -85540112 + MER7C DNA MER2_type 1 595 -7 851 256 128 25 chr9 32322835 32323272 -85539355 + Charlie1b DNA MER1_type 41 522 -1 195 42 0 0 chr9 32324611 32324635 -85537992 + (TTCC)n Simple_repeat Simple_repeat 4 27 0 200 259 0 17 chr9 32324737 32324795 -85537832 + CT-rich Low_complexity Low_complexity 4 60 0 211 336 78 16 chr9 32324795 32324923 -85537704 + MIR SINE MIR 77 212 -50 276 53 0 0 chr9 32326351 32326389 -85536238 + (CA)n Simple_repeat Simple_repeat 1 38 0 931 251 96 12 chr9 32326389 32326724 -85535903 + L1MC1 LINE L1 4260 4622 -1524 261 127 0 36 chr9 32326756 32326776 -85535851 - L1 LINE L1 -1298 4848 4829 4497 172 33 7 chr9 32326776 32327658 -85534969 + L1MC1 LINE L1 5424 6328 -5 261 127 0 36 chr9 32327658 32327692 -85534935 - L1 LINE L1 -1317 4829 4796 6290 90 7 21 chr9 32327692 32328669 -85533958 + L1PA10 LINE L1 5188 6151 -17 561 214 57 52 chr9 32328684 32328913 -85533714 + L1ME1 LINE L1 5651 5880 -286 719 146 24 8 chr9 32328974 32329097 -85533530 - L1PA16 LINE L1 -313 5853 5729 3241 137 41 60 chr9 32329143 32329779 -85532848 - L1PA16 LINE L1 -4 6162 5539 393 288 23 34 chr9 32329780 32329957 -85532670 + L1MB8 LINE L1 5992 6166 -12 221 367 13 0 chr9 32330293 32330372 -85532255 - L2 LINE L2 -17 3296 3217 327 268 34 34 chr9 32331002 32331083 -85531544 + (TA)n Simple_repeat Simple_repeat 1 81 -98 2978 196 18 5 chr9 32331083 32331680 -85530947 + MER6A DNA MER2_type 1 605 0 327 268 34 34 chr9 32331680 32331777 -85530850 + (TA)n Simple_repeat Simple_repeat 80 179 0 974 258 39 29 chr9 32331792 32332102 -85530525 - MER83C LTR ERV1 -12 361 49 1278 246 43 17 chr9 32332155 32332500 -85530127 - MER83C-int LTR ERV1 0 4880 4527 441 325 32 16 chr9 32332624 32332876 -85529751 - MER83C-int LTR ERV1 -2812 4944 4689 850 135 6 58 chr9 32332899 32333055 -85529572 - THE1A LTR MaLR 0 355 208 10713 110 14 2 chr9 32333155 32334670 -85527957 - THE1A-int LTR MaLR -47 1533 1 2173 105 27 68 chr9 32334670 32335040 -85527587 - THE1A LTR MaLR 0 355 1 585 339 31 54 chr9 32335060 32335676 -85526951 - MER83C-int LTR ERV1 -2097 2857 2256 1436 306 58 22 chr9 32335843 32336582 -85526045 - MER83C-int LTR ERV1 -3073 1881 1116 4227 242 53 26 chr9 32336740 32337957 -85524670 - MER83C-int LTR ERV1 -3847 1033 12 915 260 30 48 chr9 32337957 32338288 -85524339 - MER83C LTR ERV1 0 373 49 2182 116 0 0 chr9 32338348 32338642 -85523985 + AluY SINE Alu 1 294 -17 273 210 16 0 chr9 32338909 32338971 -85523656 - MER41A LTR ERV1 -91 463 401 2355 199 9 0 chr9 32338972 32339435 -85523192 + L1 LINE L1 4538 5004 -1142 277 311 19 10 chr9 32339652 32339755 -85522872 + L2 LINE L2 3210 3313 0 26 50 0 0 chr9 32340506 32340546 -85522081 + AT_rich Low_complexity Low_complexity 1 40 0 287 267 155 0 chr9 32341048 32341164 -85521463 - MER67D LTR ERV1 0 514 381 1365 197 21 21 chr9 32341203 32341493 -85521134 - AluJo SINE Alu -12 300 11 1658 176 27 67 chr9 32341504 32341907 -85520720 - MER67D LTR ERV1 -127 387 1 275 248 117 39 chr9 32342524 32342730 -85519897 + HAL1 LINE L1 2284 2505 -2 2378 97 0 0 chr9 32343369 32343677 -85518950 - AluSc SINE Alu -1 308 1 953 50 0 0 chr9 32344936 32345056 -85517571 - L1PA4 LINE L1 0 6155 6036 6352 39 7 0 chr9 32345156 32345931 -85516696 - L1PA4 LINE L1 -122 6033 5254 11609 40 0 1 chr9 32345944 32347379 -85515248 + L1P LINE L1 2974 4407 -1739 22 35 0 0 chr9 32348290 32348319 -85514308 + AT_rich Low_complexity Low_complexity 1 29 0 384 40 0 0 chr9 32349038 32349088 -85513539 + (CA)n Simple_repeat Simple_repeat 1 50 0 266 49 0 24 chr9 32349657 32349698 -85512929 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 3719 38 2 0 chr9 32349698 32350146 -85512481 - L1PA3 LINE L1 -24 6131 5683 6825 202 22 13 chr9 32350254 32351825 -85510802 - L1PB1 LINE L1 -1591 4555 2971 3401 164 33 6 chr9 32351826 32353001 -85509626 + L1PB1 LINE L1 4585 5791 -360 237 156 47 0 chr9 32353020 32353084 -85509543 - L1MC4 LINE L1 -1339 6703 6637 273 221 0 0 chr9 32353086 32353154 -85509473 + (TA)n Simple_repeat Simple_repeat 2 69 0 2157 136 14 8 chr9 32353157 32353517 -85509110 + L1PB1 LINE L1 5787 6148 -3 1772 180 0 20 chr9 32353553 32353682 -85508945 + AluSx SINE Alu 1 131 -181 181 0 33 33 chr9 32353682 32353712 -85508915 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1772 180 0 20 chr9 32353712 32353888 -85508739 + AluSx SINE Alu 131 300 -12 207 100 0 0 chr9 32353888 32353918 -85508709 + (GA)n Simple_repeat Simple_repeat 1 30 0 297 244 173 12 chr9 32353939 32354107 -85508520 - L1MC4 LINE L1 -2287 5521 5327 21 0 0 0 chr9 32354339 32354360 -85508267 + AT_rich Low_complexity Low_complexity 1 21 0 320 324 9 18 chr9 32354564 32354675 -85507952 + MIR SINE MIR 36 145 -63 206 279 238 7 chr9 32354845 32354992 -85507635 + MIR SINE MIR 72 252 -10 639 182 25 0 chr9 32355047 32355206 -85507421 + GA-rich Low_complexity Low_complexity 3 165 0 636 185 17 8 chr9 32355489 32355608 -85507019 - AluJb SINE Alu -40 272 153 242 196 0 0 chr9 32355665 32355711 -85506916 + (TG)n Simple_repeat Simple_repeat 2 47 0 328 160 67 40 chr9 32356690 32356765 -85505862 - AluJ/FRAM SINE Alu 0 302 226 1252 205 47 12 chr9 32356768 32356904 -85505723 - AluJb SINE Alu -49 263 133 207 0 0 0 chr9 32356904 32356927 -85505700 + (TG)n Simple_repeat Simple_repeat 2 24 0 1252 205 47 12 chr9 32356927 32357044 -85505583 - AluJb SINE Alu -179 133 1 1300 130 0 19 chr9 32357501 32357709 -85504918 + L1PA15 LINE L1 5962 6165 0 232 341 34 11 chr9 32358998 32359086 -85503541 + L2 LINE L2 3224 3313 0 852 151 63 0 chr9 32359722 32359881 -85502746 - L1MA5 LINE L1 -6 6294 6126 2373 92 0 0 chr9 32360897 32361202 -85501425 - AluSq SINE Alu -8 305 1 6690 66 5 2 chr9 32361675 32362908 -85499719 + L1PA7 LINE L1 4921 6168 0 24 53 0 0 chr9 32363386 32363424 -85499203 + AT_rich Low_complexity Low_complexity 1 38 0 42832 44 9 1 chr9 32365564 32371049 -85491578 - L1P1 LINE L1 -627 5528 1 1635 196 3 69 chr9 32371464 32371856 -85490771 + MER47A DNA MER2_type 1 366 0 2317 151 61 37 chr9 32373149 32373638 -85488989 + L1MA7 LINE L1 5782 6282 -9 1752 156 4 4 chr9 32373713 32373988 -85488639 + AluSx SINE Alu 1 275 -37 228 301 128 23 chr9 32374734 32374867 -85487760 - LTR67 LTR ERVL -248 309 163 369 283 40 11 chr9 32375010 32375187 -85487440 - MER113 DNA MER1_type? -339 182 1 180 0 0 0 chr9 32377074 32377094 -85485533 + (A)n Simple_repeat Simple_repeat 1 20 0 229 91 73 73 chr9 32377539 32377594 -85485033 - L1M2c LINE L1 -4781 2008 1954 197 119 24 0 chr9 32379008 32379050 -85483577 + (CA)n Simple_repeat Simple_repeat 2 44 0 1633 91 4 4 chr9 32379542 32379772 -85482855 + AluY SINE Alu 72 301 -10 359 310 21 7 chr9 32379832 32379974 -85482653 + L1M4 LINE L1 2 145 -6397 2732 155 33 51 chr9 32380023 32380935 -85481692 - MER52C LTR ERV1 -1 1277 303 241 253 159 60 chr9 32381142 32381324 -85481303 + L1M4 LINE L1 340 539 -6003 * 487 228 24 0 chr9 32381323 32381450 -85481177 - L1 LINE L1 -2455 3691 3562 * 1651 176 26 31 chr9 32381447 32382970 -85479657 + L1PB4 LINE L1 4592 6153 -3 2528 101 3 0 chr9 32383030 32383388 -85479239 + L1PB1 LINE L1 5787 6145 -6 255 79 0 0 chr9 32385829 32385867 -85476760 + (CA)n Simple_repeat Simple_repeat 2 39 0 768 353 106 30 chr9 32386036 32386814 -85475813 - L2 LINE L2 0 3313 2456 928 311 153 24 chr9 32386814 32387535 -85475092 - L2 LINE L2 -988 2326 1513 784 304 127 15 chr9 32387567 32388031 -85474596 - L2 LINE L2 -2427 887 372 24 32 0 0 chr9 32389040 32389071 -85473556 + AT_rich Low_complexity Low_complexity 1 31 0 921 299 70 24 chr9 32390654 32391028 -85471599 + LTR16A LTR ERVL 60 450 0 204 400 19 9 chr9 32391451 32391556 -85471071 + MIR SINE MIR 1 106 -156 35 54 0 0 chr9 32392215 32392271 -85470356 + AT_rich Low_complexity Low_complexity 1 56 0 838 236 4 36 chr9 32392361 32392586 -85470041 + MER20 DNA MER1_type 2 219 0 291 28 0 0 chr9 32393422 32393458 -85469169 + (TG)n Simple_repeat Simple_repeat 2 37 0 23 33 0 0 chr9 32393490 32393520 -85469107 + AT_rich Low_complexity Low_complexity 1 30 0 5121 152 19 8 chr9 32394378 32395468 -85467159 - L1P4 LINE L1 -649 5514 4413 21 0 0 0 chr9 32397404 32397425 -85465202 + AT_rich Low_complexity Low_complexity 1 21 0 906 326 38 30 chr9 32397713 32398186 -85464441 - HERV16 LTR ERVL -4214 782 306 236 254 15 0 chr9 32398223 32398290 -85464337 - L1MC/D LINE L1 -2420 5575 5508 22 70 0 0 chr9 32398373 32398416 -85464211 + AT_rich Low_complexity Low_complexity 1 43 0 27 0 0 0 chr9 32399665 32399692 -85462935 + AT_rich Low_complexity Low_complexity 1 27 0 2230 111 16 81 chr9 32399734 32400166 -85462461 - L1PA13 LINE L1 -3 6160 5757 3873 101 7 2 chr9 32400166 32400720 -85461907 + L1PA12 LINE L1 5347 5903 -265 6581 240 104 26 chr9 32400773 32402245 -85460382 + L1MDa LINE L1 14 1369 -5171 237 65 0 0 chr9 32402245 32402276 -85460351 + (CA)n Simple_repeat Simple_repeat 2 32 0 6581 240 104 26 chr9 32402276 32403015 -85459612 + L1MDa LINE L1 1369 2416 -4124 578 193 114 0 chr9 32403015 32403129 -85459498 + FLAM_C SINE Alu 1 127 -6 6581 240 104 26 chr9 32403129 32403225 -85459402 + L1MDa LINE L1 2416 2503 -4037 2661 107 12 12 chr9 32403240 32403642 -85458985 + L1P4 LINE L1 5398 5799 -362 1674 277 94 25 chr9 32406886 32407663 -85454964 + L1MDa LINE L1 361 1191 -5530 21 0 0 0 chr9 32407667 32407688 -85454939 + AT_rich Low_complexity Low_complexity 1 21 0 1228 282 37 11 chr9 32407708 32408166 -85454461 + L1MDa LINE L1 3719 4188 -2352 1179 197 33 158 chr9 32408169 32408687 -85453940 - MSTB2 LTR MaLR -4 453 1 4147 250 55 18 chr9 32408688 32410158 -85452469 + L1MDa LINE L1 4186 5715 -825 1770 161 13 7 chr9 32410158 32410468 -85452159 + AluJb SINE Alu 1 312 0 4147 250 55 18 chr9 32410468 32410497 -85452130 + L1MDa LINE L1 5715 5741 -799 210 284 57 57 chr9 32410565 32410653 -85451974 - L2 LINE L2 -35 3237 3150 333 82 0 0 chr9 32411192 32411241 -85451386 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 21 0 0 0 chr9 32412081 32412102 -85450525 + AT_rich Low_complexity Low_complexity 1 21 0 42416 50 3 2 chr9 32412153 32418281 -85444346 - L1PA4 LINE L1 -8 6147 13 579 167 0 18 chr9 32418331 32418445 -85444182 + L1PA13 LINE L1 6020 6131 -32 748 186 0 0 chr9 32418734 32418858 -85443769 + FRAM SINE Alu 38 161 -15 24 0 0 0 chr9 32419203 32419227 -85443400 + AT_rich Low_complexity Low_complexity 1 24 0 1131 267 57 35 chr9 32419524 32420156 -85442471 - L1M4 LINE L1 -1492 4654 4009 * 2370 236 58 19 chr9 32420140 32420883 -85441744 - L1M4 LINE L1 -1970 4987 4216 232 233 0 0 chr9 32420895 32420938 -85441689 + polypyrimidine Low_complexity Low_complexity 2 44 0 345 300 17 17 chr9 32420961 32421081 -85441546 + Charlie8 DNA MER1_type 157 276 -2141 627 275 58 0 chr9 32424197 32424455 -85438172 - L1M4 LINE L1 -3171 3786 3514 253 207 69 0 chr9 32424511 32424569 -85438058 - L1M4 LINE L1 -5775 1084 1023 665 284 114 7 chr9 32424585 32424856 -85437771 - L1M4 LINE L1 -5886 973 674 2468 210 30 0 chr9 32424866 32425327 -85437300 - MER70B LTR ERVL -103 475 1 793 333 136 39 chr9 32425327 32425864 -85436763 - L1M4 LINE L1 -6161 698 110 198 0 0 0 chr9 32425864 32425886 -85436741 + (TC)n Simple_repeat Simple_repeat 1 22 0 239 0 32 0 chr9 32425886 32425917 -85436710 + (CA)n Simple_repeat Simple_repeat 1 32 0 204 97 0 0 chr9 32426004 32426035 -85436592 + (TTGG)n Simple_repeat Simple_repeat 2 32 0 239 246 108 0 chr9 32426042 32426107 -85436520 - L1MDa LINE L1 -6465 75 4 22 0 0 0 chr9 32426695 32426717 -85435910 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr9 32426949 32426985 -85435642 + AT_rich Low_complexity Low_complexity 1 36 0 250 321 85 29 chr9 32427191 32427437 -85435190 - L1M4 LINE L1 -2192 3954 3695 1991 56 12 0 chr9 32428079 32428330 -85434297 - AluY SINE Alu -5 306 53 23 54 0 0 chr9 32428720 32428757 -85433870 + AT_rich Low_complexity Low_complexity 1 37 0 326 252 106 41 chr9 32429828 32429951 -85432676 + MIR SINE MIR 121 251 -11 941 293 151 26 chr9 32430001 32430935 -85431692 + L1M4 LINE L1 1390 2440 -3944 737 272 39 85 chr9 32430965 32431602 -85431025 + L1M4 LINE L1 5023 5630 -752 234 365 14 35 chr9 32434299 32434444 -85428183 - MIR3 SINE MIR -26 182 41 180 0 0 0 chr9 32436392 32436412 -85426215 + (A)n Simple_repeat Simple_repeat 1 20 0 200 268 41 0 chr9 32437005 32437102 -85425525 + (TA)n Simple_repeat Simple_repeat 1 101 0 761 314 40 36 chr9 32437152 32437504 -85425123 + L1M3d LINE L1 55 677 -5214 265 323 79 63 chr9 32437545 32437734 -85424893 + L1M3d LINE L1 202 393 -5498 498 122 12 0 chr9 32437817 32437899 -85424728 + L1MB1 LINE L1 5320 5402 -766 * 2266 67 7 0 chr9 32437894 32438194 -85424433 - L1PA5 LINE L1 -1068 5078 4777 7424 38 1 0 chr9 32438194 32439272 -85423355 + L1PA5 LINE L1 5075 6153 -1 3021 201 52 36 chr9 32439272 32440044 -85422583 + L1MB1 LINE L1 5385 6168 0 403 302 72 0 chr9 32440260 32440399 -85422228 + MIR SINE MIR 59 207 -55 273 217 228 6 chr9 32440854 32441034 -85421593 - MER97a DNA MER1_type? -2 892 673 1442 236 75 16 chr9 32441053 32441426 -85421201 - LTR52 LTR ERVL -20 401 7 * 1697 275 73 14 chr9 32441425 32442066 -85420561 - MER97c DNA MER1_type? -407 683 5 22 0 0 0 chr9 32442431 32442453 -85420174 + AT_rich Low_complexity Low_complexity 1 22 0 491 259 76 6 chr9 32443501 32444152 -85418475 - L1MB8 LINE L1 -56 6122 5401 195 283 152 28 chr9 32444543 32444688 -85417939 - L3 LINE CR1 -79 1498 1336 256 339 107 36 chr9 32444935 32445159 -85417468 - MIR SINE MIR -3 259 20 189 0 0 0 chr9 32447265 32447286 -85415341 + (TG)n Simple_repeat Simple_repeat 2 22 0 1016 218 0 15 chr9 32447303 32447505 -85415122 + Tigger3(Golem) DNA MER2_type 3 201 -2828 25 65 0 0 chr9 32447507 32447553 -85415074 + AT_rich Low_complexity Low_complexity 1 46 0 2846 138 69 11 chr9 32447643 32447895 -85414732 + Tigger3(Golem) DNA MER2_type 2453 2689 -340 2108 143 40 3 chr9 32447895 32448246 -85414381 + THE1B LTR MaLR 1 364 0 2846 138 69 11 chr9 32448246 32448516 -85414111 + Tigger3(Golem) DNA MER2_type 2689 3005 -24 189 0 0 0 chr9 32451019 32451040 -85411587 + (A)n Simple_repeat Simple_repeat 1 21 0 1694 129 39 70 chr9 32451324 32451711 -85410916 - THE1C LTR MaLR 0 375 1 302 179 0 15 chr9 32453185 32453252 -85409375 + (CATATA)n Simple_repeat Simple_repeat 4 69 0 215 232 18 0 chr9 32453648 32453704 -85408923 + GA-rich Low_complexity Low_complexity 3 59 0 22 0 0 0 chr9 32454304 32454326 -85408301 + AT_rich Low_complexity Low_complexity 1 22 0 887 243 61 22 chr9 32454892 32455253 -85407374 - LTR52 LTR ERVL -4 417 1 1370 271 69 73 chr9 32457043 32457074 -85405553 + L1MD1 LINE L1 46 76 -6464 1327 182 4 4 chr9 32457074 32457310 -85405317 + MER46A DNA MER2_type 1 236 0 1370 271 69 73 chr9 32457310 32457945 -85404682 + L1MD1 LINE L1 76 709 -5831 2347 182 29 17 chr9 32457974 32458453 -85404174 + L1MA7 LINE L1 5513 5997 -294 1787 256 22 56 chr9 32458450 32459178 -85403449 + L1MD1 LINE L1 4212 4914 -1626 * 624 232 47 50 chr9 32459191 32459407 -85403220 - MLT1D LTR MaLR -237 230 23 3756 187 26 50 chr9 32459416 32460303 -85402324 + L1MD1 LINE L1 5751 6616 -20 22 35 0 0 chr9 32460308 32460337 -85402290 + AT_rich Low_complexity Low_complexity 1 29 0 326 290 23 69 chr9 32461015 32461146 -85401481 + MIR SINE MIR 99 223 -39 214 330 31 62 chr9 32461332 32461526 -85401101 + L2 LINE L2 2725 2912 -402 217 293 154 41 chr9 32461750 32461873 -85400754 + L2 LINE L2 3136 3272 0 186 274 157 0 chr9 32462078 32462129 -85400498 + L3 LINE CR1 1159 1217 -360 939 168 33 39 chr9 32465107 32465544 -85397083 - MLT1D LTR MaLR -2 503 3 358 267 114 15 chr9 32465927 32466058 -85396569 + MIR SINE MIR 80 223 -39 203 309 174 29 chr9 32466606 32466813 -85395814 - MIR SINE MIR -11 251 15 35 24 0 0 chr9 32467313 32467355 -85395272 + AT_rich Low_complexity Low_complexity 1 42 0 727 242 17 48 chr9 32468178 32468409 -85394218 + MLT1B LTR MaLR 3 226 -164 653 234 59 17 chr9 32468418 32468689 -85393938 - MER52A LTR ERV1 -992 763 1 3082 254 76 12 chr9 32468790 32470957 -85391670 - L1MB7 LINE L1 -10 6672 4363 1522 172 38 78 chr9 32470971 32471366 -85391261 - MLT1B LTR MaLR -11 379 1 1259 285 18 20 chr9 32471371 32471872 -85390755 - L1MB7 LINE L1 -2291 4353 3854 6023 142 27 37 chr9 32471886 32472213 -85390414 - L1MA1 LINE L1 0 6302 5973 330 45 0 0 chr9 32472213 32472257 -85390370 + (TG)n Simple_repeat Simple_repeat 1 44 0 276 197 33 0 chr9 32472257 32472318 -85390309 - AluJ/FRAM SINE Alu -23 279 217 6023 142 27 37 chr9 32472318 32474074 -85388553 - L1MA1 LINE L1 -327 5975 4176 216 67 0 0 chr9 32474076 32474106 -85388521 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1275 257 88 24 chr9 32474109 32474203 -85388424 - L1MB7 LINE L1 -2827 3817 3730 2216 108 7 0 chr9 32474203 32474509 -85388118 + AluSp SINE Alu 1 308 -5 1275 257 88 24 chr9 32474509 32475134 -85387493 - L1MB7 LINE L1 -2914 3730 3052 562 307 35 29 chr9 32475136 32475476 -85387151 - L1MB7 LINE L1 -5636 906 525 23 0 0 0 chr9 32475494 32475517 -85387110 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr9 32475635 32475665 -85386962 + AT_rich Low_complexity Low_complexity 1 30 0 24 32 0 0 chr9 32475915 32475946 -85386681 + AT_rich Low_complexity Low_complexity 1 31 0 392 188 0 0 chr9 32476048 32476112 -85386515 + AluS SINE Alu 1 64 -236 824 204 0 0 chr9 32476150 32476302 -85386325 + AluSg/x SINE Alu 145 296 -14 25 31 0 0 chr9 32476369 32476401 -85386226 + AT_rich Low_complexity Low_complexity 1 32 0 28 29 0 0 chr9 32476497 32476532 -85386095 + AT_rich Low_complexity Low_complexity 1 35 0 186 171 0 0 chr9 32477228 32477269 -85385358 + (CA)n Simple_repeat Simple_repeat 2 42 0 21 57 0 0 chr9 32477285 32477320 -85385307 + AT_rich Low_complexity Low_complexity 1 35 0 715 264 66 98 chr9 32477389 32477896 -85384731 + L1ME3A LINE L1 4927 5449 -721 1937 198 23 26 chr9 32477896 32478325 -85384302 + MSTB1 LTR MaLR 3 430 -2 715 264 66 98 chr9 32478325 32478683 -85383944 + L1ME3A LINE L1 5449 5758 -412 920 174 10 24 chr9 32478683 32478890 -85383737 + L1MA7 LINE L1 6082 6285 -6 715 264 66 98 chr9 32478890 32479043 -85383584 + L1ME3A LINE L1 5758 5914 -256 244 264 33 22 chr9 32479087 32479178 -85383449 + L1ME3A LINE L1 6053 6144 -26 3501 204 52 20 chr9 32480841 32481935 -85380692 + L1MB7 LINE L1 4890 6167 -17 1638 63 0 0 chr9 32481945 32482152 -85380475 - L1PA5 LINE L1 -1 6153 5947 41986 58 6 1 chr9 32482152 32487832 -85374795 - L1P2 LINE L1 -438 5716 11 259 236 106 56 chr9 32487863 32487951 -85374676 + L1MC5 LINE L1 5812 5894 -1914 3151 163 20 21 chr9 32487951 32488557 -85374070 + MER6A DNA MER2_type 1 605 0 259 236 106 56 chr9 32488557 32488629 -85373998 + L1MC5 LINE L1 5894 5980 -1828 2081 102 65 0 chr9 32488721 32489014 -85373613 + AluSq SINE Alu 2 313 0 25 51 0 0 chr9 32489053 32489092 -85373535 + AT_rich Low_complexity Low_complexity 1 39 0 601 220 140 35 chr9 32490053 32490325 -85372302 + L1MC5 LINE L1 6593 6893 -915 407 340 41 16 chr9 32490618 32490812 -85371815 + MIR3 SINE MIR 6 204 -4 3087 97 9 14 chr9 32490860 32491302 -85371325 - MLT2A1 LTR ERVL -3 441 2 21 57 0 0 chr9 32491620 32491655 -85370972 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr9 32491752 32491782 -85370845 + AT_rich Low_complexity Low_complexity 1 30 0 39 50 0 0 chr9 32491888 32491948 -85370679 + AT_rich Low_complexity Low_complexity 1 60 0 681 194 16 0 chr9 32492504 32492633 -85369994 + FLAM_C SINE Alu 3 133 0 200 224 0 17 chr9 32492978 32493036 -85369591 + A-rich Low_complexity Low_complexity 4 60 0 273 333 31 38 chr9 32493093 32493252 -85369375 - MIR SINE MIR -32 230 73 4227 138 39 35 chr9 32495496 32496267 -85366360 + Tigger1 DNA MER2_type 528 1301 -1117 1124 176 27 0 chr9 32496304 32496525 -85366102 + Tigger1 DNA MER2_type 2190 2416 -2 1513 228 84 97 chr9 32496531 32497461 -85365166 - MER57A-int LTR ERV1 -2156 2780 1863 428 206 19 65 chr9 32497531 32497638 -85364989 - MER34 LTR ERV1 -305 237 136 733 213 134 4 chr9 32497782 32498059 -85364568 - MER57A-int LTR ERV1 -3481 1455 1143 271 175 0 63 chr9 32498204 32498267 -85364360 - MER57A-int LTR ERV1 -3996 940 882 808 251 154 27 chr9 32498604 32498863 -85363764 - MER57A-int LTR ERV1 -7243 294 3 701 221 135 109 chr9 32498866 32499259 -85363368 - MER57A LTR ERV1 0 403 1 251 256 209 0 chr9 32499606 32499692 -85362935 - L2 LINE L2 0 3272 3169 25 31 0 0 chr9 32500323 32500355 -85362272 + AT_rich Low_complexity Low_complexity 1 32 0 723 167 8 23 chr9 32501124 32501256 -85361371 - FLAM_C SINE Alu -13 130 1 201 94 0 0 chr9 32502108 32502140 -85360487 + (TC)n Simple_repeat Simple_repeat 1 32 0 412 345 107 11 chr9 32502336 32502597 -85360030 + L2 LINE L2 2565 2850 -464 270 294 40 16 chr9 32502854 32502980 -85359647 - L1M4 LINE L1 -5361 1181 1053 21 0 0 0 chr9 32503180 32503201 -85359426 + AT_rich Low_complexity Low_complexity 1 21 0 276 187 27 13 chr9 32503206 32503231 -85359396 - L1MDa LINE L1 -3923 2617 2594 2159 113 0 0 chr9 32503231 32503531 -85359096 - AluSx SINE Alu -12 300 1 276 187 27 13 chr9 32503531 32503580 -85359047 - L1MDa LINE L1 -3946 2594 2542 2050 133 19 27 chr9 32503596 32503964 -85358663 - L1MA2 LINE L1 0 6304 5940 305 179 103 0 chr9 32503965 32504043 -85358584 - L1MDa LINE L1 -3984 2556 2471 2678 151 16 0 chr9 32504056 32504507 -85358120 - L1PA13 LINE L1 -11 6152 5695 436 115 0 0 chr9 32506247 32506308 -85356319 - L1PA13 LINE L1 -252 5911 5851 2148 96 17 0 chr9 32506338 32506630 -85355997 + AluSp SINE Alu 1 297 -16 270 0 0 0 chr9 32506630 32506660 -85355967 + (TA)n Simple_repeat Simple_repeat 2 31 0 6885 142 17 21 chr9 32507389 32509250 -85353377 + L1MA2 LINE L1 4450 6304 0 314 202 109 62 chr9 32509259 32509452 -85353175 + L1ME LINE L1 681 882 -5188 1720 174 6 25 chr9 32509646 32509963 -85352664 + AluJo SINE Alu 2 312 0 256 279 36 103 chr9 32510512 32510677 -85351950 + MLT1G1-int LTR MaLR 1034 1187 -184 251 275 99 0 chr9 32510853 32510944 -85351683 + MLT1G1 LTR MaLR 2 101 -494 1358 67 0 6 chr9 32512135 32512314 -85350313 + AluY SINE Alu 132 309 -2 822 318 102 11 chr9 32512652 32513014 -85349613 + MLT1G1 LTR MaLR 151 545 -50 42 36 0 0 chr9 32514174 32514230 -85348397 + AT_rich Low_complexity Low_complexity 1 56 0 296 181 96 0 chr9 32515257 32515340 -85347287 + L1MC4 LINE L1 6615 6705 -1337 250 143 16 63 chr9 32516664 32516727 -85345900 + L1MC4 LINE L1 6648 6707 -1335 21 0 0 0 chr9 32516750 32516771 -85345856 + AT_rich Low_complexity Low_complexity 1 21 0 2088 116 0 10 chr9 32518132 32518424 -85344203 + AluSx SINE Alu 3 291 -21 36 77 0 0 chr9 32518575 32518653 -85343974 + AT_rich Low_complexity Low_complexity 1 78 0 258 239 14 14 chr9 32518719 32518790 -85343837 + MIR SINE MIR 188 258 -4 22 0 0 0 chr9 32518874 32518896 -85343731 + AT_rich Low_complexity Low_complexity 1 22 0 216 171 49 0 chr9 32519032 32519084 -85343543 + (TATG)n Simple_repeat Simple_repeat 1 54 0 1981 122 0 7 chr9 32519208 32519527 -85343100 + AluSq SINE Alu 1 317 0 502 302 55 19 chr9 32519591 32519902 -85342725 + L1M4 LINE L1 4018 4339 -1807 316 220 77 11 chr9 32519902 32519993 -85342634 - MER58B DNA MER1_type -5 336 240 21 0 0 0 chr9 32521659 32521680 -85340947 + AT_rich Low_complexity Low_complexity 1 21 0 588 207 6 22 chr9 32524831 32525010 -85337617 + CT-rich Low_complexity Low_complexity 3 178 0 372 22 0 0 chr9 32525557 32525602 -85337025 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 21 0 0 0 chr9 32525785 32525806 -85336821 + AT_rich Low_complexity Low_complexity 1 21 0 1337 219 39 28 chr9 32525942 32526303 -85336324 + MLT1A1 LTR MaLR 1 365 0 778 309 93 30 chr9 32526424 32527133 -85335494 + L2 LINE L2 2525 3280 -33 21 0 0 0 chr9 32528243 32528264 -85334363 + AT_rich Low_complexity Low_complexity 1 21 0 1763 249 5 13 chr9 32528315 32528713 -85333914 + MSTD LTR MaLR 2 396 0 2511 245 10 7 chr9 32528715 32529310 -85333317 + MSTD-int LTR MaLR 2 598 -1137 1824 42 5 0 chr9 32529311 32529524 -85333103 + AluY SINE Alu 69 282 -29 961 267 82 98 chr9 32529634 32530124 -85332503 + MSTD-int LTR MaLR 604 1085 -650 1710 212 89 31 chr9 32530145 32530663 -85331964 + LTR10A LTR ERV1 1 548 -61 2527 248 40 2 chr9 32530683 32531240 -85331387 + MSTD-int LTR MaLR 1107 1684 -51 1706 204 15 60 chr9 32531296 32531698 -85330929 + MSTD LTR MaLR 13 396 0 24 0 0 0 chr9 32531912 32531936 -85330691 + AT_rich Low_complexity Low_complexity 1 24 0 2620 150 62 39 chr9 32532470 32532570 -85330057 - LTR59 LTR ERV1 -18 579 483 208 0 62 0 chr9 32532570 32532602 -85330025 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2620 150 62 39 chr9 32532602 32533061 -85329566 - LTR59 LTR ERV1 -114 483 7 1486 101 0 0 chr9 32533868 32534067 -85328560 + AluSg/x SINE Alu 106 304 -8 762 219 87 21 chr9 32534102 32534452 -85328175 - L1MB4 LINE L1 -1 6179 5783 466 204 0 0 chr9 32534486 32534579 -85328048 + L1M2 LINE L1 2356 2448 -4401 38 0 0 0 chr9 32534579 32534617 -85328010 + AT_rich Low_complexity Low_complexity 1 38 0 3178 191 38 73 chr9 32534617 32535362 -85327265 + L1M2 LINE L1 2442 3204 -3644 555 152 0 20 chr9 32535362 32535453 -85327174 + FLAM_A SINE Alu 32 122 -189 180 0 0 0 chr9 32535453 32535473 -85327154 + (TTTAA)n Simple_repeat Simple_repeat 3 22 0 3178 191 38 73 chr9 32535480 32536191 -85326436 + L1M2 LINE L1 3204 3938 -2910 958 246 126 9 chr9 32536196 32536461 -85326166 - L1M4c LINE L1 -5326 1216 926 243 0 0 0 chr9 32536461 32536488 -85326139 + (TG)n Simple_repeat Simple_repeat 2 28 0 958 246 126 9 chr9 32536488 32536599 -85326028 - L1M4c LINE L1 -5616 926 829 820 314 82 39 chr9 32536606 32537274 -85325353 - L1M4c LINE L1 -5844 698 2 438 20 0 0 chr9 32537577 32537628 -85324999 + (TTA)n Simple_repeat Simple_repeat 1 51 0 320 277 12 24 chr9 32538458 32538541 -85324086 - MER20B DNA MER1_type -610 173 92 710 314 53 62 chr9 32539100 32539590 -85323037 - MLT1H LTR MaLR -2 547 1 216 200 0 0 chr9 32540702 32540772 -85321855 + T-rich Low_complexity Low_complexity 1 70 0 1366 218 38 51 chr9 32540795 32541190 -85321437 + MLT1B LTR MaLR 1 390 0 550 304 6 0 chr9 32541355 32541513 -85321114 + FRAM SINE Alu 3 161 -15 188 277 12 48 chr9 32543061 32543144 -85319483 - MIR SINE MIR -107 155 76 29 0 0 0 chr9 32543200 32543229 -85319398 + AT_rich Low_complexity Low_complexity 1 29 0 260 259 24 24 chr9 32543237 32543322 -85319305 + L2 LINE L2 2665 2749 -565 2110 99 7 0 chr9 32543322 32543606 -85319021 + AluSg SINE Alu 1 286 -24 207 0 0 0 chr9 32543610 32543633 -85318994 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 281 310 28 7 chr9 32544394 32544536 -85318091 + L1M3de LINE L1 1755 1899 -4754 3449 76 0 2 chr9 32544611 32545070 -85317557 + L1PA7 LINE L1 5695 6152 -2 237 269 41 7 chr9 32545564 32545709 -85316918 + L1MEc LINE L1 2093 2242 -4154 6040 74 5 16 chr9 32546276 32547103 -85315524 + L1PA6 LINE L1 5332 6149 -5 237 255 55 21 chr9 32547597 32547742 -85314885 + L1MEc LINE L1 2093 2242 -4154 432 326 85 7 chr9 32548197 32548773 -85313854 + L1MCc LINE L1 1263 1890 -4889 27 29 0 0 chr9 32548812 32548846 -85313781 + AT_rich Low_complexity Low_complexity 1 34 0 1002 342 53 23 chr9 32549517 32550087 -85312540 + L1PA16 LINE L1 788 1374 -6200 280 348 33 7 chr9 32550076 32550367 -85312260 + L1PA16 LINE L1 2075 2298 -5276 * 4979 252 36 24 chr9 32550586 32553372 -85309255 + L1PA16 LINE L1 2182 4962 -2622 * 42558 32 21 1 chr9 32553368 32559436 -85303191 + L1PA2 LINE L1 1 6191 0 451 191 95 48 chr9 32559441 32559588 -85303039 - MER112 DNA MER1_type -101 159 6 29 47 0 0 chr9 32559712 32559755 -85302872 + AT_rich Low_complexity Low_complexity 1 43 0 276 30 0 0 chr9 32559889 32559922 -85302705 + (A)n Simple_repeat Simple_repeat 1 33 0 7567 211 21 14 chr9 32559923 32561908 -85300719 + L1PA16 LINE L1 4949 6933 -671 2130 175 44 18 chr9 32561908 32562340 -85300287 + L1PA16 LINE L1 7143 7588 -16 2951 222 48 7 chr9 32562351 32563085 -85299542 - L1MB2 LINE L1 -31 6140 5377 342 0 0 0 chr9 32563193 32563231 -85299396 + (TG)n Simple_repeat Simple_repeat 1 38 0 198 305 221 39 chr9 32564020 32564174 -85298453 + MIR SINE MIR 47 228 -34 25 0 0 0 chr9 32564511 32564536 -85298091 + AT_rich Low_complexity Low_complexity 1 25 0 24 32 0 0 chr9 32564906 32564937 -85297690 + AT_rich Low_complexity Low_complexity 1 31 0 214 208 28 28 chr9 32565512 32565584 -85297043 + (TA)n Simple_repeat Simple_repeat 2 73 0 21 57 0 0 chr9 32565880 32565915 -85296712 + AT_rich Low_complexity Low_complexity 1 35 0 264 290 49 33 chr9 32566428 32566452 -85296175 + L1MEd LINE L1 1042 1064 -5055 249 33 0 0 chr9 32566452 32566482 -85296145 + (TA)n Simple_repeat Simple_repeat 1 30 0 264 290 49 33 chr9 32566482 32566640 -85295987 + L1MEd LINE L1 1064 1227 -4892 286 198 22 99 chr9 32567611 32567702 -85294925 + MLT1J LTR MaLR 388 471 -40 29 28 0 0 chr9 32568347 32568383 -85294244 + AT_rich Low_complexity Low_complexity 1 36 0 1858 151 27 3 chr9 32569204 32569502 -85293125 - AluJo SINE Alu -7 305 1 810 340 98 14 chr9 32569589 32570299 -85292328 - L2 LINE L2 -10 3303 2534 2073 109 6 32 chr9 32570724 32571037 -85291590 - AluSp SINE Alu -6 307 3 31 0 0 0 chr9 32571043 32571074 -85291553 + AT_rich Low_complexity Low_complexity 1 31 0 266 349 24 8 chr9 32571612 32571738 -85290889 + MER96 DNA MER1_type? 45 172 -3 317 87 0 0 chr9 32571937 32571983 -85290644 + MADE1 DNA Mariner 1 46 -34 339 22 22 0 chr9 32572023 32572068 -85290559 + MADE1 DNA Mariner 35 80 0 366 325 49 6 chr9 32572076 32572239 -85290388 + MIR SINE MIR 92 261 -1 22 0 0 0 chr9 32572450 32572472 -85290155 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr9 32572607 32572639 -85289988 + AT_rich Low_complexity Low_complexity 1 32 0 932 268 127 63 chr9 32574475 32575299 -85287328 + HAL1b LINE L1 440 1316 -32 822 146 15 0 chr9 32575390 32575520 -85287107 + AluJo/FLAM SINE Alu 1 132 -180 366 254 16 71 chr9 32575522 32575648 -85286979 + AluSc SINE Alu 181 299 0 21 36 0 0 chr9 32575891 32575919 -85286708 + AT_rich Low_complexity Low_complexity 1 28 0 231 88 0 0 chr9 32576422 32576456 -85286171 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 291 233 108 97 chr9 32576898 32577074 -85285553 + MER104 DNA Tc2 1 178 -2 195 42 0 0 chr9 32578154 32578178 -85284449 + (TTG)n Simple_repeat Simple_repeat 1 24 0 180 0 0 0 chr9 32578649 32578669 -85283958 + (TA)n Simple_repeat Simple_repeat 1 20 0 26 64 0 0 chr9 32578747 32578794 -85283833 + AT_rich Low_complexity Low_complexity 1 47 0 679 214 0 0 chr9 32579380 32579511 -85283116 - MER52A LTR ERV1 -208 1547 1417 3768 165 25 3 chr9 32579778 32580420 -85282207 - MER52A LTR ERV1 0 1755 1100 1749 234 51 2 chr9 32580541 32580995 -85281632 - L1MB1 LINE L1 -362 5827 5352 342 0 0 0 chr9 32581083 32581121 -85281506 + (TG)n Simple_repeat Simple_repeat 1 38 0 198 305 221 39 chr9 32581910 32582064 -85280563 + MIR SINE MIR 47 228 -34 25 0 0 0 chr9 32582401 32582426 -85280201 + AT_rich Low_complexity Low_complexity 1 25 0 24 32 0 0 chr9 32582796 32582827 -85279800 + AT_rich Low_complexity Low_complexity 1 31 0 214 208 28 28 chr9 32583402 32583474 -85279153 + (TA)n Simple_repeat Simple_repeat 2 73 0 21 57 0 0 chr9 32583770 32583805 -85278822 + AT_rich Low_complexity Low_complexity 1 35 0 264 290 49 33 chr9 32584318 32584342 -85278285 + L1MEd LINE L1 1042 1064 -5055 249 33 0 0 chr9 32584342 32584372 -85278255 + (TA)n Simple_repeat Simple_repeat 1 30 0 264 290 49 33 chr9 32584372 32584530 -85278097 + L1MEd LINE L1 1064 1227 -4892 255 198 23 105 chr9 32585502 32585588 -85277039 + MLT1J LTR MaLR 388 466 -45 29 28 0 0 chr9 32586234 32586270 -85276357 + AT_rich Low_complexity Low_complexity 1 36 0 1858 151 27 3 chr9 32587091 32587389 -85275238 - AluJo SINE Alu -7 305 1 810 340 98 14 chr9 32587476 32588186 -85274441 - L2 LINE L2 -10 3303 2534 2057 112 6 32 chr9 32588611 32588924 -85273703 - AluSp SINE Alu -6 307 3 31 0 0 0 chr9 32588930 32588961 -85273666 + AT_rich Low_complexity Low_complexity 1 31 0 266 349 24 8 chr9 32589499 32589625 -85273002 + MER96 DNA MER1_type? 45 172 -3 317 87 0 0 chr9 32589824 32589870 -85272757 + MADE1 DNA Mariner 1 46 -34 339 22 22 0 chr9 32589910 32589955 -85272672 + MADE1 DNA Mariner 35 80 0 366 325 49 6 chr9 32589963 32590126 -85272501 + MIR SINE MIR 92 261 -1 22 0 0 0 chr9 32590337 32590359 -85272268 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr9 32590494 32590526 -85272101 + AT_rich Low_complexity Low_complexity 1 32 0 932 268 127 63 chr9 32592362 32593186 -85269441 + HAL1b LINE L1 440 1316 -32 822 146 15 0 chr9 32593277 32593407 -85269220 + AluJo/FLAM SINE Alu 1 132 -180 366 254 16 71 chr9 32593409 32593535 -85269092 + AluSc SINE Alu 181 299 0 21 36 0 0 chr9 32593778 32593806 -85268821 + AT_rich Low_complexity Low_complexity 1 28 0 231 88 0 0 chr9 32594309 32594343 -85268284 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 291 233 108 97 chr9 32594785 32594961 -85267666 + MER104 DNA Tc2 1 178 -2 195 42 0 0 chr9 32596041 32596065 -85266562 + (TTG)n Simple_repeat Simple_repeat 1 24 0 679 214 0 0 chr9 32596421 32596552 -85266075 - MER52A LTR ERV1 -208 1547 1417 7377 189 133 6 chr9 32596819 32598377 -85264250 - MER52A LTR ERV1 0 1755 1 12885 61 3 18 chr9 32598962 32601429 -85261198 + HERVH LTR ERV1 5283 7713 0 3464 60 2 2 chr9 32601429 32601877 -85260750 + LTR7 LTR ERV1 1 448 -2 3817 233 54 30 chr9 32601879 32602971 -85259656 - MER52A LTR ERV1 -560 1195 1 400 246 64 0 chr9 32603000 32603110 -85259517 + MIR SINE MIR 112 228 -34 1643 207 19 16 chr9 32604942 32605265 -85257362 - MLT1A1 LTR MaLR -41 324 1 215 211 0 0 chr9 32605265 32605303 -85257324 + (ATG)n Simple_repeat Simple_repeat 2 39 0 263 264 14 0 chr9 32605318 32605390 -85257237 + L1MA9 LINE L1 6087 6159 -153 564 278 67 16 chr9 32605430 32605624 -85257003 - MIR SINE MIR -57 205 2 198 71 0 0 chr9 32605876 32605904 -85256723 + (CA)n Simple_repeat Simple_repeat 1 28 0 305 240 146 0 chr9 32605966 32606062 -85256565 - L1ME4a LINE L1 -260 5861 5752 340 358 19 0 chr9 32606076 32606238 -85256389 - L1ME4a LINE L1 -412 5709 5545 230 259 17 43 chr9 32606309 32606425 -85256202 - L1ME4a LINE L1 -681 5440 5328 286 322 15 20 chr9 32606882 32607081 -85255546 - L1MC4a LINE L1 -1909 6293 6096 1793 181 29 18 chr9 32607727 32608070 -85254557 + MER7A DNA MER2_type 1 345 -1 22 35 0 0 chr9 32608187 32608216 -85254411 + AT_rich Low_complexity Low_complexity 1 29 0 28 61 0 0 chr9 32608463 32608512 -85254115 + AT_rich Low_complexity Low_complexity 1 49 0 52 0 0 0 chr9 32609074 32609126 -85253501 + AT_rich Low_complexity Low_complexity 1 52 0 7458 138 31 7 chr9 32609732 32611001 -85251626 - HSMAR2 DNA Mariner -1 1301 2 956 282 79 10 chr9 32611259 32611755 -85250872 - L1MC4a LINE L1 -1523 5017 4488 467 91 0 0 chr9 32611838 32611904 -85250723 - AluSp/q SINE Alu -12 301 236 1125 146 0 11 chr9 32611904 32612089 -85250538 - AluSx SINE Alu -127 185 3 696 334 73 14 chr9 32612099 32612824 -85249803 - L1MC4a LINE L1 -2300 4240 3473 468 226 83 11 chr9 32612834 32613015 -85249612 - L1MC4a LINE L1 -4032 2689 2496 343 310 66 30 chr9 32613268 32613539 -85249088 - L1MC4a LINE L1 -4577 2144 1864 513 265 80 103 chr9 32613587 32614013 -85248614 - L1MEc LINE L1 -4832 1727 1293 1379 142 13 13 chr9 32616249 32616488 -85246139 + L1PA16 LINE L1 5923 6161 -5 1979 135 17 0 chr9 32617340 32617629 -85244998 + AluSx SINE Alu 1 294 -18 673 218 14 51 chr9 32617634 32617850 -85244777 + L1MA10 LINE L1 6116 6323 -11 287 272 10 29 chr9 32619402 32619505 -85243122 + (CTA)n Simple_repeat Simple_repeat 1 101 0 213 39 0 0 chr9 32619892 32619918 -85242709 + (TTCC)n Simple_repeat Simple_repeat 1 26 0 1808 166 10 3 chr9 32619918 32620219 -85242408 - AluSq SINE Alu -10 303 1 2871 6 0 0 chr9 32620613 32620927 -85241700 - AluYb8 SINE Alu -4 314 1 31 0 0 0 chr9 32620938 32620969 -85241658 + AT_rich Low_complexity Low_complexity 1 31 0 2414 93 0 0 chr9 32621120 32621454 -85241173 + L1PA7 LINE L1 5821 6154 0 28 48 0 0 chr9 32621619 32621661 -85240966 + AT_rich Low_complexity Low_complexity 1 42 0 304 313 56 14 chr9 32621816 32621960 -85240667 + MIR SINE MIR 76 225 -37 256 273 131 40 chr9 32623542 32623641 -85238986 - MIR SINE MIR -71 137 30 21 36 0 0 chr9 32624583 32624611 -85238016 + AT_rich Low_complexity Low_complexity 1 28 0 2165 111 51 20 chr9 32625315 32625668 -85236959 - THE1B LTR MaLR 0 364 1 21 0 0 0 chr9 32627401 32627422 -85235205 + AT_rich Low_complexity Low_complexity 1 21 0 243 88 0 0 chr9 32627505 32627539 -85235088 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 21 0 0 0 chr9 32628545 32628566 -85234061 + AT_rich Low_complexity Low_complexity 1 21 0 1523 144 22 11 chr9 32629173 32629444 -85233183 - AluSg SINE Alu -19 291 18 337 307 48 0 chr9 32629571 32629763 -85232864 + L1MC/D LINE L1 5616 5820 -301 191 86 0 29 chr9 32630161 32630196 -85232431 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 2348 56 0 0 chr9 32630585 32630911 -85231716 + AluY SINE Alu 1 326 0 201 320 110 10 chr9 32631655 32631717 -85230910 - MIR3 SINE MIR -2 206 152 1006 80 0 0 chr9 32631717 32631854 -85230773 - L1PA7 LINE L1 -3 6151 6015 201 320 110 10 chr9 32631854 32631891 -85230736 - MIR3 SINE MIR -56 152 97 225 192 41 27 chr9 32632674 32632747 -85229880 + CT-rich Low_complexity Low_complexity 1 74 0 783 239 20 0 chr9 32633900 32634101 -85228526 + L1MC/D LINE L1 4945 5149 -997 510 228 110 0 chr9 32634650 32634786 -85227841 + MLT1I LTR MaLR 245 395 -14 303 335 58 40 chr9 32635321 32635599 -85227028 + L1MC/D LINE L1 5314 5596 -2212 1121 66 0 0 chr9 32635748 32635900 -85226727 + L1PA4 LINE L1 6004 6155 0 1568 184 7 19 chr9 32636024 32636334 -85226293 + AluJo SINE Alu 1 306 -6 559 333 95 41 chr9 32636348 32636917 -85225710 - L2 LINE L2 -168 3145 2551 4792 191 27 5 chr9 32637428 32638654 -85223973 - L1MA7 LINE L1 0 6291 5036 7301 35 1 15 chr9 32640686 32641846 -85220781 - L1PA5 LINE L1 0 6154 5022 2340 48 41 0 chr9 32641846 32642139 -85220488 - AluY SINE Alu -5 306 2 7301 35 1 15 chr9 32642139 32642667 -85219960 - L1PA5 LINE L1 -1132 5022 4488 11245 41 9 0 chr9 32642667 32644076 -85218551 + L1PA5 LINE L1 3081 4502 -1644 2159 112 3 0 chr9 32644188 32644514 -85218113 + AluSp SINE Alu 1 327 0 2119 119 0 3 chr9 32645886 32646196 -85216431 - AluSg SINE Alu -1 309 1 511 316 119 50 chr9 32646821 32647316 -85215311 + L2 LINE L2 2661 3204 -109 1804 235 18 35 chr9 32647316 32647830 -85214797 + MLT1D LTR MaLR 1 505 0 511 316 119 50 chr9 32647830 32647938 -85214689 + L2 LINE L2 3204 3303 -10 23 54 0 0 chr9 32648004 32648041 -85214586 + AT_rich Low_complexity Low_complexity 1 37 0 719 240 31 15 chr9 32648181 32648377 -85214250 - L1MC5 LINE L1 -61 7900 7702 306 248 20 89 chr9 32648545 32648646 -85213981 + MLT1H LTR MaLR 241 334 -215 262 210 55 47 chr9 32648680 32648786 -85213841 + MLT1H LTR MaLR 437 582 -8 387 279 0 0 chr9 32648864 32648986 -85213641 - MER69 DNA AcHobo -7 2519 2398 3213 74 0 2 chr9 32649884 32650317 -85212310 - L1PA7 LINE L1 -2 6152 5721 310 312 11 0 chr9 32651203 32651296 -85211331 - L1MC4 LINE L1 -1337 6705 6612 267 210 48 0 chr9 32651300 32651362 -85211265 + (CATATA)n Simple_repeat Simple_repeat 3 67 0 264 232 98 0 chr9 32651362 32651444 -85211183 + L1MC4 LINE L1 6614 6703 -1339 331 276 85 56 chr9 32653210 32653529 -85209098 - L1M4 LINE L1 -1938 4208 3881 496 333 46 31 chr9 32653675 32654065 -85208562 - L1M4 LINE L1 -2422 3724 3329 504 250 0 0 chr9 32654130 32654242 -85208385 - FAM SINE Alu -37 148 37 361 265 26 0 chr9 32654517 32654634 -85207993 - L1M4 LINE L1 -3329 2817 2698 27 62 0 0 chr9 32655639 32655687 -85206940 + AT_rich Low_complexity Low_complexity 1 48 0 333 261 87 0 chr9 32657058 32657173 -85205454 - L2 LINE L2 -12 3301 3177 189 273 193 27 chr9 32657189 32657339 -85205288 + L2 LINE L2 3011 3185 -128 514 286 156 38 chr9 32658810 32659285 -85203342 - L2 LINE L2 -5 3308 2780 2263 70 23 0 chr9 32659347 32659646 -85202981 - AluY SINE Alu -5 306 1 449 336 94 62 chr9 32660314 32661005 -85201622 - L3 LINE CR1 -575 1002 290 350 367 38 22 chr9 32661881 32662194 -85200433 - L1ME4a LINE L1 -159 5962 5645 702 162 8 0 chr9 32662544 32662661 -85199966 + AluJb SINE Alu 165 282 -30 2395 60 7 0 chr9 32662796 32663097 -85199530 - AluY SINE Alu -8 303 1 25 0 0 0 chr9 32663317 32663342 -85199285 + AT_rich Low_complexity Low_complexity 1 25 0 249 188 16 31 chr9 32663938 32664002 -85198625 + GA-rich Low_complexity Low_complexity 3 65 0 305 289 133 23 chr9 32664429 32664557 -85198070 + L2 LINE L2 3171 3312 -1 5351 154 47 3 chr9 32665163 32666704 -85195923 - L1MA4 LINE L1 -6 6294 4673 239 0 32 0 chr9 32666704 32666735 -85195892 + (TTG)n Simple_repeat Simple_repeat 2 33 0 5351 154 47 3 chr9 32666735 32666874 -85195753 - L1MA4 LINE L1 -1627 4673 4542 187 336 172 8 chr9 32667352 32667474 -85195153 + MIR SINE MIR 32 173 -89 2397 73 3 0 chr9 32667485 32667788 -85194839 - AluY SINE Alu -6 305 2 240 111 0 0 chr9 32667803 32667839 -85194788 + (A)n Simple_repeat Simple_repeat 1 36 0 1893 82 30 26 chr9 32668143 32668410 -85194217 + AluSg SINE Alu 35 302 -8 2358 192 25 40 chr9 32668659 32669186 -85193441 - MLT2B1 LTR ERVL 0 520 2 4087 125 0 28 chr9 32669818 32670472 -85192155 + L1PA15 LINE L1 5526 6161 -4 346 259 43 79 chr9 32670847 32670986 -85191641 + L1ME LINE L1 37 170 -5900 1054 263 91 53 chr9 32670988 32671553 -85191074 - MLT1E1 LTR MaLR -7 647 1 267 345 12 48 chr9 32671650 32671818 -85190809 + L1ME LINE L1 254 415 -5655 * 1369 256 17 37 chr9 32671814 32672199 -85190428 - L1M4 LINE L1 -2266 3880 3502 2238 98 7 0 chr9 32672199 32672495 -85190132 + AluSg SINE Alu 1 298 -12 1369 256 17 37 chr9 32672495 32672515 -85190112 - L1M4 LINE L1 -2644 3502 3483 533 332 96 21 chr9 32672669 32673046 -85189581 - L1MEc LINE L1 -5963 433 29 2249 328 57 21 chr9 32673411 32674426 -85188201 + L2 LINE L2 38 1089 -2225 1995 196 39 5 chr9 32674443 32675053 -85187574 - Tigger7 DNA MER2_type -1777 710 2 525 319 98 0 chr9 32675054 32675217 -85187410 + L2 LINE L2 1061 1239 -2075 2073 307 94 23 chr9 32675438 32676515 -85186112 + L2 LINE L2 1897 3043 -270 5258 109 32 2 chr9 32676802 32677612 -85185015 - L1PA7 LINE L1 -1464 4682 3849 6593 73 10 1 chr9 32677613 32679066 -85183561 + L1PA7 LINE L1 4685 6154 0 23 0 0 0 chr9 32679147 32679170 -85183457 + AT_rich Low_complexity Low_complexity 1 23 0 281 375 52 2 chr9 32679442 32679597 -85183030 - MER5A DNA MER1_type 0 178 15 21 36 0 0 chr9 32680236 32680264 -85182363 + AT_rich Low_complexity Low_complexity 1 28 0 2231 106 10 0 chr9 32681104 32681407 -85181220 + AluSc SINE Alu 1 306 -3 186 43 0 0 chr9 32682429 32682452 -85180175 + (T)n Simple_repeat Simple_repeat 1 23 0 351 44 0 0 chr9 32682791 32682836 -85179791 + (TG)n Simple_repeat Simple_repeat 2 46 0 2247 97 0 7 chr9 32683090 32683388 -85179239 + AluSx SINE Alu 1 296 -16 265 365 83 0 chr9 32684541 32684686 -85177941 + L1ME LINE L1 12 168 -5902 405 173 39 167 chr9 32686165 32686321 -85176306 + LTR28 LTR ERV1 1 171 -289 2131 191 98 50 chr9 32686337 32686992 -85175635 + LTR28 LTR ERV1 121 819 -7 2085 125 0 0 chr9 32687640 32687927 -85174700 + AluSx SINE Alu 2 288 -24 799 302 56 32 chr9 32688386 32688948 -85173679 + MLT2E LTR ERVL 6 628 0 243 266 75 53 chr9 32689235 32689329 -85173298 - MER5A DNA MER1_type 0 189 94 2228 168 36 7 chr9 32689884 32690300 -85172327 - MSTA LTR MaLR 0 428 1 31 0 0 0 chr9 32690312 32690343 -85172284 + AT_rich Low_complexity Low_complexity 1 31 0 25 65 0 0 chr9 32690435 32690481 -85172146 + AT_rich Low_complexity Low_complexity 1 46 0 316 346 66 15 chr9 32690569 32690705 -85171922 - MIR3 SINE MIR -64 144 2 700 207 122 0 chr9 32691174 32691362 -85171265 + MER33 DNA MER1_type 25 235 -89 1171 180 32 54 chr9 32691370 32691648 -85170979 - AluJb SINE Alu -19 293 22 25 0 0 0 chr9 32691959 32691984 -85170643 + AT_rich Low_complexity Low_complexity 1 25 0 316 239 7 7 chr9 32692050 32692188 -85170439 + (TA)n Simple_repeat Simple_repeat 2 139 0 260 224 45 0 chr9 32692399 32692466 -85170161 + Charlie1 DNA MER1_type 2687 2756 -5 22 35 0 0 chr9 32693419 32693448 -85169179 + AT_rich Low_complexity Low_complexity 1 29 0 206 258 52 62 chr9 32693926 32694023 -85168604 - L2 LINE L2 -6 3307 3212 549 111 55 17 chr9 32694655 32694949 -85167678 + (TA)n Simple_repeat Simple_repeat 1 305 0 209 156 0 62 chr9 32694950 32695014 -85167613 + (TTTA)n Simple_repeat Simple_repeat 2 61 0 348 0 0 55 chr9 32695023 32695078 -85167549 + (TTAAA)n Simple_repeat Simple_repeat 1 52 0 871 200 10 34 chr9 32695082 32695287 -85167340 - L1MC3 LINE L1 -568 7217 7018 189 357 65 26 chr9 32695587 32695741 -85166886 + L3 LINE CR1 1374 1533 -44 871 200 10 34 chr9 32697105 32697310 -85165317 + L1MC3 LINE L1 7018 7217 -568 222 37 0 0 chr9 32697314 32697341 -85165286 + (TTTAA)n Simple_repeat Simple_repeat 1 27 0 39 0 0 0 chr9 32697341 32697380 -85165247 + AT_rich Low_complexity Low_complexity 1 39 0 395 106 81 0 chr9 32697381 32697541 -85165086 + (TA)n Simple_repeat Simple_repeat 1 173 0 328 131 65 7 chr9 32697556 32697709 -85164918 + (TA)n Simple_repeat Simple_repeat 1 162 0 571 244 8 0 chr9 32699550 32699677 -85162950 + Tigger3(Golem) DNA MER2_type 1 128 -2901 4632 155 25 27 chr9 32699679 32700436 -85162191 + Tigger3(Golem) DNA MER2_type 2117 2873 -156 1953 158 3 51 chr9 32700436 32700790 -85161837 - MER1B DNA MER1_type 0 337 1 4632 155 25 27 chr9 32700790 32700927 -85161700 + Tigger3(Golem) DNA MER2_type 2873 3009 -20 2715 211 27 11 chr9 32700934 32701488 -85161139 - MER52A LTR ERV1 -2 1753 1191 3535 51 2 2 chr9 32701488 32701936 -85160691 + LTR7 LTR ERV1 1 448 -2 5694 102 19 43 chr9 32701938 32702923 -85159704 + HERVH LTR ERV1 1 962 -6751 5660 119 0 12 chr9 32703023 32703917 -85158710 + HERVH LTR ERV1 2113 2995 -4718 931 133 7 0 chr9 32703896 32704046 -85158581 + HERVH LTR ERV1 3140 3290 -4423 * 8839 83 15 6 chr9 32704036 32705790 -85156837 + HERVH LTR ERV1 3492 5225 -1866 459 258 169 9 chr9 32756375 32756588 -85106039 - MIR SINE MIR -2 260 14 421 242 70 101 chr9 32757348 32757646 -85104981 + L2 LINE L2 2966 3254 -18 28 29 0 0 chr9 32758123 32758158 -85104469 + AT_rich Low_complexity Low_complexity 1 35 0 273 322 32 23 chr9 32758650 32758803 -85103824 - MIR SINE MIR -74 188 34 200 333 35 18 chr9 32759297 32759411 -85103216 + MIR3 SINE MIR 41 156 -52 1601 254 131 85 chr9 32759473 32760512 -85102115 + L1MC4a LINE L1 6721 7807 -1 193 257 29 14 chr9 32763741 32763811 -85098816 + L2 LINE L2 2932 3002 -270 593 323 10 0 chr9 32764403 32764601 -85098026 + MIR SINE MIR 8 207 -55 1165 234 194 14 chr9 32764718 32765085 -85097542 - MLT1J2 LTR MaLR -17 433 1 189 267 0 17 chr9 32766450 32766510 -85096117 + L2 LINE L2 3184 3242 -30 193 158 0 0 chr9 32768024 32768062 -85094565 + L2 LINE L2 2715 2752 -562 197 288 62 0 chr9 32768384 32768464 -85094163 + L2 LINE L2 3180 3264 -49 22 70 0 0 chr9 32770847 32770890 -85091737 + GC_rich Low_complexity Low_complexity 1 43 0 23 78 0 0 chr9 32770963 32771014 -85091613 + GC_rich Low_complexity Low_complexity 1 51 0 961 311 85 15 chr9 32771971 32772431 -85090196 - L2 LINE L2 0 3313 2822 4469 174 27 13 chr9 32773150 32774043 -85088584 - Charlie1a DNA MER1_type -12 1443 539 591 134 219 8 chr9 32774050 32774169 -85088458 + ORSL DNA AcHobo 2 145 -130 267 200 0 31 chr9 32774198 32774263 -85088364 - Charlie1a DNA MER1_type -918 537 475 * 1118 153 100 32 chr9 32774240 32774489 -85088138 - ORSL DNA AcHobo -9 266 1 2301 198 44 38 chr9 32774489 32774994 -85087633 - Charlie1a DNA MER1_type -947 508 1 1235 153 5 0 chr9 32775107 32775296 -85087331 + AluSx SINE Alu 1 190 -122 1374 178 32 36 chr9 32775518 32775741 -85086886 + Charlie1a DNA MER1_type 12 235 -2526 351 0 0 0 chr9 32775741 32775780 -85086847 + (CA)n Simple_repeat Simple_repeat 1 39 0 1374 178 32 36 chr9 32775780 32775837 -85086790 + Charlie1a DNA MER1_type 235 291 -1164 2205 156 36 3 chr9 32775843 32776233 -85086394 + Charlie1a DNA MER1_type 643 1045 -410 2540 53 0 3 chr9 32776249 32776551 -85086076 + AluY SINE Alu 1 301 -10 1471 176 24 110 chr9 32776645 32777054 -85085573 - MLT1A2 LTR MaLR 0 374 1 1921 151 3 13 chr9 32777070 32777382 -85085245 + AluJb SINE Alu 1 309 -3 3781 253 66 27 chr9 32777398 32778814 -85083813 + L1MC4a LINE L1 5305 6618 -1190 615 253 65 23 chr9 32778804 32779156 -85083471 - L1M4 LINE L1 -2685 3461 3095 * 1618 214 26 24 chr9 32779155 32779534 -85083093 - L1ME3A LINE L1 0 6170 5791 1846 198 67 118 chr9 32779537 32779638 -85082989 - L1ME3A LINE L1 -982 5164 5059 1750 146 9 61 chr9 32779638 32779966 -85082661 - AluSx SINE Alu -1 311 1 1846 198 67 118 chr9 32779966 32780214 -85082413 - L1ME3A LINE L1 -1087 5059 4800 11030 40 11 51 chr9 32780214 32781647 -85080980 + SVA Other Other 2 1377 -9 1846 198 67 118 chr9 32781647 32782028 -85080599 - L1ME3A LINE L1 -1346 4800 4470 279 273 18 36 chr9 32782032 32782142 -85080485 - L1M4 LINE L1 -964 5182 5075 295 215 98 18 chr9 32782812 32782973 -85079654 + L1ME3 LINE L1 5934 6162 0 283 243 175 0 chr9 32783064 32783167 -85079460 - L1M4 LINE L1 -1214 4932 4812 851 169 22 0 chr9 32783167 32783303 -85079324 - MLT1A2 LTR MaLR 0 374 236 1608 286 86 13 chr9 32783315 32784150 -85078477 - L1MEc LINE L1 -2781 3434 2539 545 256 62 40 chr9 32784220 32784541 -85078086 - L1MEc LINE L1 -3643 2572 2260 2327 108 3 0 chr9 32784541 32784847 -85077780 - AluSq SINE Alu -6 307 1 545 256 62 40 chr9 32784847 32785363 -85077264 - L1MEc LINE L1 -3955 2260 1630 315 204 88 22 chr9 32785379 32785516 -85077111 - L1MC5 LINE L1 -46 7915 7770 2120 244 32 14 chr9 32785545 32786111 -85076516 - L1ME2 LINE L1 -10 6154 5579 1129 112 0 129 chr9 32786108 32786341 -85076286 + L1PB3 LINE L1 5951 6153 -1 * 32 0 0 0 chr9 32786341 32786373 -85076254 + AT_rich Low_complexity Low_complexity 1 32 0 660 207 34 10 chr9 32786374 32786684 -85075943 - L1ME2 LINE L1 -573 5591 5196 3730 53 40 4 chr9 32786685 32787159 -85075468 - L1PA6 LINE L1 0 6154 5664 241 74 9 259 chr9 32787261 32787369 -85075258 + L1PB3 LINE L1 6073 6153 -1 6410 232 47 42 chr9 32787388 32787709 -85074918 - L1ME LINE L1 -562 5536 5218 6734 52 0 3 chr9 32787709 32788788 -85073839 - L1PA6 LINE L1 0 6154 5054 6410 232 47 42 chr9 32788788 32790510 -85072117 - L1ME LINE L1 -880 5218 3402 1294 129 17 21 chr9 32790510 32790750 -85071877 - L1MB3 LINE L1 -1 6182 5944 6410 232 47 42 chr9 32790750 32791211 -85071416 - L1ME LINE L1 -2696 3402 2945 780 253 87 62 chr9 32791217 32791829 -85070798 - L1ME LINE L1 -4981 1089 463 285 314 16 8 chr9 32791895 32792016 -85070611 - L1ME LINE L1 -5907 163 42 666 315 24 58 chr9 32792041 32792111 -85070516 - L1MEc LINE L1 -4761 1635 1564 786 173 8 0 chr9 32792111 32792238 -85070389 - FLAM_A SINE Alu -5 128 1 666 315 24 58 chr9 32792238 32792720 -85069907 - L1MEc LINE L1 -4832 1564 1102 1454 317 70 2 chr9 32792723 32793181 -85069446 - LTR16C LTR ERVL -2 489 1 2019 254 91 18 chr9 32794077 32794976 -85067651 - L1MEc LINE L1 -3037 3178 2214 390 301 102 32 chr9 32795075 32795291 -85067336 - L1MEc LINE L1 -4256 2140 1910 231 221 44 22 chr9 32795320 32795456 -85067171 + (TATAA)n Simple_repeat Simple_repeat 5 143 0 4005 170 186 88 chr9 32795539 32796071 -85066556 - L1MC3 LINE L1 0 7785 7306 230 303 11 45 chr9 32796071 32796160 -85066467 - MLT1F1 LTR MaLR -445 122 37 4005 170 186 88 chr9 32796160 32796901 -85065726 - L1MC3 LINE L1 -479 7306 6291 561 196 19 25 chr9 32796916 32797074 -85065553 - MER96B DNA MER1_type? -254 163 7 2140 112 61 0 chr9 32797973 32798267 -85064360 + AluSq SINE Alu 1 312 -1 1252 241 73 48 chr9 32799267 32799706 -85062921 - MLT1J2 LTR MaLR 0 450 1 492 242 23 15 chr9 32799954 32800086 -85062541 - L1ME3A LINE L1 0 6170 6038 240 333 56 0 chr9 32800277 32800367 -85062260 + MIR3 SINE MIR 89 183 -25 435 278 68 17 chr9 32800682 32800858 -85061769 + MIR SINE MIR 18 202 -60 249 254 70 0 chr9 32801276 32801347 -85061280 + MIR SINE MIR 47 122 -140 232 241 37 0 chr9 32801417 32801471 -85061156 + LTR67 LTR ERVL 115 170 -387 264 167 0 37 chr9 32801746 32801800 -85060827 + LTR33A LTR ERVL 447 498 -25 187 216 0 0 chr9 32803144 32803181 -85059446 - MER5A DNA MER1_type -5 184 148 1078 170 0 21 chr9 32803214 32803413 -85059214 + MER6A DNA MER2_type -10 183 -422 3437 168 23 26 chr9 32803420 32804004 -85058623 + L1MB4 LINE L1 5476 6060 -120 2109 112 4 0 chr9 32804004 32804282 -85058345 + AluSx SINE Alu 1 279 -33 252 0 0 0 chr9 32804282 32804310 -85058317 + (CA)n Simple_repeat Simple_repeat 1 28 0 3437 168 23 26 chr9 32804310 32804414 -85058213 + L1MB4 LINE L1 6058 6163 -17 341 187 13 0 chr9 32804414 32804489 -85058138 + (TG)n Simple_repeat Simple_repeat 2 77 0 * 393 339 24 6 chr9 32804477 32804642 -85057985 - MER5A DNA MER1_type -19 170 3 249 296 12 0 chr9 32805556 32805637 -85056990 - L2 LINE L2 -5 3308 3227 463 152 209 29 chr9 32805644 32805749 -85056878 - MER20 DNA MER1_type -94 125 2 516 185 0 0 chr9 32806089 32806181 -85056446 - AluJ/FLAM SINE Alu -219 93 2 1164 222 89 9 chr9 32806248 32806563 -85056064 - L1ME3A LINE L1 -5 6165 5826 207 250 144 94 chr9 32807090 32807250 -85055377 - MIR SINE MIR -79 183 16 214 292 0 43 chr9 32808754 32808833 -85053794 + MIR SINE MIR 77 151 -63 673 298 41 5 chr9 32810448 32810666 -85051961 - MIR SINE MIR -17 245 20 198 280 91 0 chr9 32812832 32812949 -85049678 + MIR3 SINE MIR 75 155 -53 1442 239 39 42 chr9 32813106 32813537 -85049090 - MER63B DNA MER1_type 0 436 7 561 226 0 0 chr9 32813953 32814099 -85048528 + (TG)n Simple_repeat Simple_repeat 2 147 0 22 0 0 0 chr9 32814630 32814652 -85047975 + AT_rich Low_complexity Low_complexity 1 22 0 238 233 83 0 chr9 32814932 32814992 -85047635 - MIR SINE MIR -74 188 124 563 284 136 49 chr9 32815401 32815912 -85046715 + LTR33A LTR ERVL 1 521 -2 562 250 10 66 chr9 32818742 32818938 -85043689 - MIR SINE MIR -47 215 31 539 263 82 6 chr9 32820077 32820248 -85042379 - MIR SINE MIR -1 261 78 359 244 0 33 chr9 32820246 32820336 -85042291 + MIR SINE MIR 75 161 -101 * 293 264 91 27 chr9 32820497 32820607 -85042020 + L2 LINE L2 3195 3311 -2 218 345 139 14 chr9 32822992 32823201 -85039426 - L2 LINE L2 -3 3269 3035 211 378 8 24 chr9 32823419 32823546 -85039081 + L2 LINE L2 2928 3052 -220 2382 116 0 0 chr9 32824128 32824439 -85038188 - AluSx SINE Alu -1 311 1 3692 243 37 15 chr9 32825652 32826735 -85035892 - L1M4 LINE L1 -1089 5057 3951 723 310 92 19 chr9 32826741 32827006 -85035621 + L1MEc LINE L1 1581 1825 -4571 2029 87 0 7 chr9 32827006 32827304 -85035323 - L1PA14 LINE L1 0 6161 5866 723 310 92 19 chr9 32827304 32827506 -85035121 + L1MEc LINE L1 1825 2082 -4314 346 269 23 0 chr9 32827932 32828042 -85034585 - MIR SINE MIR -86 122 9 233 212 45 15 chr9 32828948 32829014 -85033613 + MIR SINE MIR 64 131 -77 454 238 177 18 chr9 32829572 32829736 -85032891 + MIR SINE MIR 28 217 -45 406 282 61 0 chr9 32830015 32830146 -85032481 - MIR SINE MIR -116 146 8 371 279 41 14 chr9 32831812 32831959 -85030668 - L2 LINE L2 -209 3063 2913 492 278 156 9 chr9 32832330 32832542 -85030085 + MIR SINE MIR 2 244 -18 995 39 78 0 chr9 32832542 32832671 -85029956 + MER85 DNA T2_type 1 139 0 478 128 13 0 chr9 32832679 32832757 -85029870 + MADE1 DNA Mariner 2 80 0 590 266 114 13 chr9 32832940 32833286 -85029341 - MLT1J LTR MaLR -49 462 38 547 249 108 56 chr9 32835714 32835983 -85026644 + MER102b DNA MER1_type 58 340 -1 742 233 66 40 chr9 32836184 32836412 -85026215 - MLT1D LTR MaLR -270 235 2 206 327 156 30 chr9 32836580 32836779 -85025848 - L2 LINE L2 -352 2962 2739 441 298 35 0 chr9 32837096 32837237 -85025390 + MIR SINE MIR 35 180 -82 1634 156 27 40 chr9 32837317 32837618 -85025009 - AluJb SINE Alu -2 310 14 534 209 87 26 chr9 32838434 32838586 -85024041 - MIR SINE MIR -63 145 26 225 310 0 0 chr9 32839064 32839135 -85023492 - L2 LINE L2 -2 3270 3200 4944 200 63 72 chr9 32842172 32843739 -85018888 + L1MC4 LINE L1 6172 7804 -238 2341 75 0 0 chr9 32843739 32844051 -85018576 + AluSc SINE Alu 1 312 0 4944 200 63 72 chr9 32844051 32844289 -85018338 + L1MC4 LINE L1 7804 8042 0 258 240 13 67 chr9 32845093 32845168 -85017459 + Charlie1 DNA MER1_type 1 71 -2690 * 1400 150 147 12 chr9 32845166 32845500 -85017127 + Charlie1 DNA MER1_type 2343 2721 -40 1983 144 3 28 chr9 32845563 32845883 -85016744 + AluJb SINE Alu 1 312 0 839 289 54 31 chr9 32845883 32846236 -85016391 - MLT1I LTR MaLR -14 395 35 529 306 32 5 chr9 32846280 32846466 -85016161 + L2 LINE L2 3120 3310 -3 3158 148 22 22 chr9 32848059 32848595 -85014032 + L1MB3 LINE L1 5595 6133 -50 2236 112 3 3 chr9 32848595 32848890 -85013737 + AluSq SINE Alu 1 295 -18 3158 148 22 22 chr9 32848890 32848942 -85013685 + L1MB3 LINE L1 6132 6183 0 183 156 0 0 chr9 32849831 32849863 -85012764 + CT-rich Low_complexity Low_complexity 3 34 0 468 251 28 84 chr9 32851110 32851325 -85011302 + MER112 DNA MER1_type 18 220 -40 591 285 88 62 chr9 32852284 32852544 -85010083 - MLT1K LTR MaLR -109 479 213 821 183 151 0 chr9 32852992 32853182 -85009445 - MIR SINE MIR 0 262 45 2745 36 0 0 chr9 32853650 32853956 -85008671 + AluY SINE Alu 1 306 -5 207 182 0 0 chr9 32854043 32854076 -85008551 + (TG)n Simple_repeat Simple_repeat 2 34 0 201 300 43 14 chr9 32854137 32854207 -85008420 - L2 LINE L2 -499 2815 2744 467 275 20 0 chr9 32854485 32854690 -85007937 + (TG)n Simple_repeat Simple_repeat 1 209 0 279 221 13 4 chr9 32854709 32854943 -85007684 + (TG)n Simple_repeat Simple_repeat 1 236 0 616 206 123 12 chr9 32856026 32856196 -85006431 - MIR SINE MIR -11 251 63 387 0 0 0 chr9 32856280 32856323 -85006304 + (CAAAA)n Simple_repeat Simple_repeat 5 47 0 2320 76 0 20 chr9 32856772 32857074 -85005553 - AluY SINE Alu -15 296 1 467 155 0 48 chr9 32858238 32858322 -85004305 - Tigger3(Golem) DNA MER2_type -2949 80 1 1567 198 71 40 chr9 32859403 32859782 -85002845 + MSTD LTR MaLR 6 396 0 2200 105 10 0 chr9 32860097 32860392 -85002235 + AluSq SINE Alu 1 298 -15 2659 166 22 2 chr9 32860488 32860988 -85001639 - L1MA6 LINE L1 -4 6296 5787 1811 286 58 62 chr9 32860998 32861840 -85000787 - L1M1 LINE L1 -6654 911 73 963 182 0 12 chr9 32863393 32863558 -84999069 + THE1C LTR MaLR 1 163 -212 2103 157 13 19 chr9 32865119 32865495 -84997132 + THE1C LTR MaLR 2 375 0 9052 138 9 102 chr9 32865495 32867238 -84995389 + THE1C-int LTR MaLR 1 1580 0 2097 158 13 16 chr9 32867240 32867614 -84995013 + THE1C LTR MaLR 3 375 0 198 0 0 0 chr9 32869095 32869117 -84993510 + (CA)n Simple_repeat Simple_repeat 2 23 0 2029 125 6 13 chr9 32869444 32869756 -84992871 - AluSx SINE Alu -2 310 1 834 282 127 42 chr9 32870917 32871445 -84991182 + MER90 LTR ERV1 1 573 -2 302 346 0 0 chr9 32871850 32871957 -84990670 - L2 LINE L2 -1008 2306 2200 2137 246 15 30 chr9 32872787 32873466 -84989161 + L1M4 LINE L1 4491 5159 -987 2037 109 22 47 chr9 32873737 32874058 -84988569 - AluSq SINE Alu 0 313 1 511 299 0 8 chr9 32874325 32874459 -84988168 + MER5A DNA MER1_type 55 187 -2 361 345 49 31 chr9 32875209 32875496 -84987131 + MLT1J LTR MaLR 16 307 -204 1014 315 30 36 chr9 32875918 32876600 -84986027 - L1M2 LINE L1 -6425 1160 9 493 303 82 22 chr9 32876687 32876918 -84985709 + HAL1 LINE L1 21 265 -2242 408 278 94 13 chr9 32877143 32877377 -84985250 + HAL1 LINE L1 1088 1340 -1167 1301 298 108 25 chr9 32877409 32878325 -84984302 + HAL1 LINE L1 1487 2478 -29 942 294 54 11 chr9 32879133 32879412 -84983215 + MER45C DNA AcHobo 8 298 -655 29 0 0 0 chr9 32880637 32880666 -84981961 + AT_rich Low_complexity Low_complexity 1 29 0 2436 126 6 6 chr9 32880808 32881172 -84981455 + THE1B LTR MaLR 1 364 0 399 253 123 25 chr9 32881436 32881598 -84981029 + MIR SINE MIR 84 261 -1 252 319 28 7 chr9 32882532 32882676 -84979951 - HAL1b LINE L1 -770 578 432 1998 151 25 25 chr9 32884375 32884552 -84978075 - L1PA16 LINE L1 0 6166 5990 1824 151 178 6 chr9 32884552 32884917 -84977710 + MSTA LTR MaLR 1 428 0 1998 151 25 25 chr9 32884917 32885104 -84977523 - L1PA16 LINE L1 -175 5991 5802 420 354 57 60 chr9 32885176 32885840 -84976787 - L2 LINE L2 -1021 2293 1632 24 0 0 0 chr9 32886080 32886104 -84976523 + AT_rich Low_complexity Low_complexity 1 24 0 1109 233 8 8 chr9 32887130 32887370 -84975257 + LTR47B LTR ERVL 204 443 0 1006 295 84 75 chr9 32887994 32888651 -84973976 + MLT2F LTR ERVL 1 663 0 22 35 0 0 chr9 32888878 32888907 -84973720 + AT_rich Low_complexity Low_complexity 1 29 0 2084 130 0 3 chr9 32889982 32890283 -84972344 - AluSg SINE Alu -10 300 1 608 231 0 0 chr9 32890429 32890546 -84972081 + MER82 DNA MER2_type 10 126 -527 3534 158 11 6 chr9 32890548 32891196 -84971431 - MER50 LTR ERV1 -23 711 1 240 310 9 9 chr9 32891320 32891436 -84971191 - Tigger2 DNA MER2_type -1598 1120 757 1895 226 64 2 chr9 32891688 32892112 -84970515 + MER82 DNA MER2_type 204 653 0 354 143 0 0 chr9 32892216 32892279 -84970348 + (TG)n Simple_repeat Simple_repeat 1 63 0 3614 96 36 11 chr9 32892592 32893115 -84969512 + MER41A LTR ERV1 19 554 0 2986 158 115 52 chr9 32893199 32893914 -84968713 + MER41A-int LTR ERV1 3 762 -5184 4176 152 76 12 chr9 32894016 32894767 -84967860 + MER41A-int LTR ERV1 977 1775 -4171 819 85 144 10 chr9 32894754 32894909 -84967718 + MER41A-int LTR ERV1 1503 2017 -3929 * 291 80 80 0 chr9 32894885 32894935 -84967692 + MER41A-int LTR ERV1 2167 2220 -3726 * 13369 159 77 45 chr9 32894931 32898107 -84964520 + MER41A-int LTR ERV1 2667 5944 -2 3717 110 32 0 chr9 32898107 32898644 -84963983 + MER41A LTR ERV1 1 554 0 424 289 86 22 chr9 32898646 32898878 -84963749 + L1M4 LINE L1 4 250 -6292 2540 255 92 64 chr9 32898929 32899644 -84962983 - L1MCb LINE L1 -4851 1194 840 447 69 0 0 chr9 32899644 32899702 -84962925 - MER41B LTR ERV1 -3 632 575 2540 255 92 64 chr9 32899702 32900564 -84962063 - L1MCb LINE L1 -5205 840 4 1003 275 22 5 chr9 32900594 32900965 -84961662 - L1MCa LINE L1 -3269 3295 2919 510 296 41 12 chr9 32900976 32901219 -84961408 + L1M4 LINE L1 2740 2989 -3655 1021 256 62 39 chr9 32901274 32901707 -84960920 - L1MCa LINE L1 -5033 1012 570 2139 104 17 7 chr9 32901818 32902117 -84960510 - AluSc SINE Alu -7 302 1 708 264 26 10 chr9 32902123 32902316 -84960311 - L1MCa LINE L1 -5491 554 359 418 256 25 8 chr9 32902527 32902648 -84959979 - L1MCa LINE L1 -5705 340 218 1006 269 93 25 chr9 32902649 32903046 -84959581 - MLT1C LTR MaLR -9 458 35 589 262 38 11 chr9 32903083 32903292 -84959335 - L1MCa LINE L1 -5853 320 1 1936 142 3 0 chr9 32903511 32903800 -84958827 + AluSx SINE Alu 1 290 -22 1988 136 163 8 chr9 32904578 32904947 -84957680 - MSTA LTR MaLR 0 428 3 1704 121 51 81 chr9 32905434 32905805 -84956822 - THE1C LTR MaLR -15 360 1 756 146 49 0 chr9 32905827 32905971 -84956656 + L1MB1 LINE L1 6017 6167 -1 204 83 0 56 chr9 32906440 32906476 -84956151 + (TAAAAA)n Simple_repeat Simple_repeat 2 35 0 1841 164 61 19 chr9 32906491 32906851 -84955776 + THE1C LTR MaLR 1 375 0 1821 160 20 23 chr9 32907777 32908121 -84954506 - MER2 DNA MER2_type 0 344 2 215 331 158 7 chr9 32908454 32908593 -84954034 - MIR3 SINE MIR -40 168 9 485 254 94 50 chr9 32909042 32909243 -84953384 - L1ME1 LINE L1 -84 6082 5909 406 321 92 5 chr9 32909451 32909635 -84952992 - MIR SINE MIR -53 209 10 25 0 0 0 chr9 32910155 32910180 -84952447 + AT_rich Low_complexity Low_complexity 1 25 0 3872 169 34 14 chr9 32910430 32911195 -84951432 - L1MA10 LINE L1 -2 6332 5553 22 35 0 0 chr9 32911267 32911296 -84951331 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr9 32911513 32911544 -84951083 + AT_rich Low_complexity Low_complexity 1 31 0 25 51 0 0 chr9 32911950 32911989 -84950638 + AT_rich Low_complexity Low_complexity 1 39 0 229 330 51 17 chr9 32911994 32912112 -84950515 - L2 LINE L2 -17 3296 3175 241 271 35 12 chr9 32912117 32912202 -84950425 + L1MC4 LINE L1 6614 6700 -1342 266 169 15 0 chr9 32913014 32913079 -84949548 + (TG)n Simple_repeat Simple_repeat 2 67 0 226 175 0 32 chr9 32913097 32913160 -84949467 + GA-rich Low_complexity Low_complexity 1 61 0 1590 124 4 65 chr9 32913308 32913583 -84949044 + AluJo SINE Alu 39 296 -16 32 0 0 0 chr9 32914212 32914244 -84948383 + AT_rich Low_complexity Low_complexity 1 32 0 379 329 33 33 chr9 32914571 32914781 -84947846 - L1M4 LINE L1 -2329 3817 3608 23 0 0 0 chr9 32914792 32914815 -84947812 + AT_rich Low_complexity Low_complexity 1 23 0 271 407 16 41 chr9 32915902 32916145 -84946482 - L2 LINE L2 -50 3222 2986 894 270 71 19 chr9 32916787 32917154 -84945473 - L1MB7 LINE L1 -10 6174 5789 1274 225 55 71 chr9 32917262 32917680 -84944947 - L1MB7 LINE L1 -368 5798 5375 1484 219 7 3 chr9 32917680 32917981 -84944646 - AluJo SINE Alu -6 306 5 1274 225 55 71 chr9 32917981 32918046 -84944581 - L1MB7 LINE L1 -791 5375 5311 2472 66 6 12 chr9 32918046 32918380 -84944247 + L1PA7 LINE L1 5823 6154 0 1274 225 55 71 chr9 32918380 32918410 -84944217 - L1MB7 LINE L1 -855 5311 5282 402 39 0 0 chr9 32918410 32918462 -84944165 + (TAA)n Simple_repeat Simple_repeat 1 52 0 1274 225 55 71 chr9 32918462 32918649 -84943978 - L1MB7 LINE L1 -884 5282 5088 299 172 13 0 chr9 32918680 32918750 -84943877 + L1ME LINE L1 5605 5679 -485 4012 37 19 0 chr9 32918801 32919282 -84943345 - LTR2B LTR ERV1 0 490 1 245 95 0 81 chr9 32919338 32919412 -84943215 + (TA)n Simple_repeat Simple_repeat 1 68 0 1876 250 58 31 chr9 32919480 32920223 -84942404 - L1MB7 LINE L1 -1112 5034 4272 23 0 0 0 chr9 32920257 32920280 -84942347 + AT_rich Low_complexity Low_complexity 1 23 0 2519 272 31 70 chr9 32920280 32921081 -84941546 - L1MA9 LINE L1 -38 6274 5505 338 194 10 51 chr9 32921075 32921173 -84941454 - L1MB7 LINE L1 -1875 4271 4178 * 36 77 0 0 chr9 32921715 32921793 -84940834 + AT_rich Low_complexity Low_complexity 1 78 0 720 288 0 42 chr9 32922149 32922364 -84940263 - MER63A DNA MER1_type -4 206 1 479 292 116 13 chr9 32922395 32922792 -84939835 - MLT1L LTR MaLR -6 609 131 564 288 124 8 chr9 32923458 32923708 -84938919 + LTR16A1 LTR ERVL 179 457 0 440 152 96 68 chr9 32924131 32924147 -84938480 - L1MA8 LINE L1 -87 6207 6193 368 129 29 0 chr9 32924147 32924217 -84938410 - L1MA9 LINE L1 0 6312 6241 440 152 96 68 chr9 32924217 32924345 -84938282 - L1MA8 LINE L1 -101 6193 6069 225 319 76 28 chr9 32924530 32924674 -84937953 - MIR SINE MIR -24 238 88 2532 140 24 7 chr9 32926397 32926818 -84935809 - MSTA LTR MaLR 0 428 1 582 220 0 0 chr9 32926941 32927059 -84935568 - L1PB4 LINE L1 -11 6145 6028 237 326 0 0 chr9 32927059 32927154 -84935473 - L1MCb LINE L1 -5161 884 790 857 301 70 55 chr9 32927164 32927619 -84935008 - L2 LINE L2 0 3313 2852 367 258 24 32 chr9 32927662 32927786 -84934841 - L2 LINE L2 -914 2400 2278 1059 304 45 104 chr9 32927913 32928779 -84933848 - L2 LINE L2 -2064 1250 436 189 300 17 17 chr9 32928911 32928971 -84933656 - MIR SINE MIR -133 75 16 203 195 24 0 chr9 32929140 32929181 -84933446 + (CATA)n Simple_repeat Simple_repeat 2 43 0 183 42 0 0 chr9 32929673 32929697 -84932930 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 864 194 10 35 chr9 32930023 32930224 -84932403 - L1MC3 LINE L1 -572 7213 7018 346 78 78 0 chr9 32931833 32931935 -84930692 + (TA)n Simple_repeat Simple_repeat 1 110 0 206 258 52 62 chr9 32932559 32932656 -84929971 + L2 LINE L2 3212 3307 -6 22 35 0 0 chr9 32933133 32933162 -84929465 + AT_rich Low_complexity Low_complexity 1 29 0 260 224 45 0 chr9 32934110 32934177 -84928450 - Charlie1 DNA MER1_type -5 2756 2687 316 239 7 7 chr9 32934389 32934527 -84928100 + (TA)n Simple_repeat Simple_repeat 2 139 0 25 0 0 0 chr9 32934593 32934618 -84928009 + AT_rich Low_complexity Low_complexity 1 25 0 1171 180 32 54 chr9 32934928 32935206 -84927421 + AluJb SINE Alu 22 293 -19 700 207 122 0 chr9 32935214 32935402 -84927225 - MER33 DNA MER1_type -89 235 25 316 346 66 15 chr9 32935871 32936007 -84926620 + MIR3 SINE MIR 2 144 -64 25 65 0 0 chr9 32936095 32936141 -84926486 + AT_rich Low_complexity Low_complexity 1 46 0 31 0 0 0 chr9 32936233 32936264 -84926363 + AT_rich Low_complexity Low_complexity 1 31 0 2228 168 36 7 chr9 32936276 32936692 -84925935 + MSTA LTR MaLR 1 428 0 243 266 75 53 chr9 32937247 32937341 -84925286 + MER5A DNA MER1_type 94 189 0 777 302 56 32 chr9 32937628 32938186 -84924441 - MLT2E LTR ERVL 0 628 10 2085 125 0 0 chr9 32938648 32938935 -84923692 - AluSx SINE Alu -24 288 2 2131 190 101 46 chr9 32939583 32940238 -84922389 - LTR28 LTR ERV1 -7 827 121 405 173 39 167 chr9 32940254 32940410 -84922217 - LTR28 LTR ERV1 -289 171 1 265 365 83 0 chr9 32941889 32942034 -84920593 - L1ME LINE L1 -5902 168 12 2247 97 0 7 chr9 32943187 32943485 -84919142 - AluSx SINE Alu -16 296 1 387 41 0 0 chr9 32943739 32943788 -84918839 + (CA)n Simple_repeat Simple_repeat 2 50 0 2231 106 10 0 chr9 32945163 32945466 -84917161 - AluSc SINE Alu -3 306 1 21 36 0 0 chr9 32946306 32946334 -84916293 + AT_rich Low_complexity Low_complexity 1 28 0 281 375 52 2 chr9 32946970 32947125 -84915502 + MER5A DNA MER1_type 15 178 0 23 0 0 0 chr9 32947397 32947420 -84915207 + AT_rich Low_complexity Low_complexity 1 23 0 6557 73 55 4 chr9 32947501 32948930 -84913697 - L1PA7 LINE L1 0 6154 4684 458 129 24 0 chr9 32948930 32949015 -84913612 + L1P LINE L1 3850 3936 -2210 2824 101 31 2 chr9 32949134 32949580 -84913047 - L1P LINE L1 -1003 5143 4685 5258 109 32 2 chr9 32949581 32950391 -84912236 + L1P LINE L1 3849 4682 -1464 2050 308 94 24 chr9 32950677 32951755 -84910872 - L2 LINE L2 -270 3043 1897 525 319 98 0 chr9 32951976 32952139 -84910488 - L2 LINE L2 -2075 1239 1061 2009 194 39 5 chr9 32952140 32952750 -84909877 + Tigger7 DNA MER2_type 2 710 -1777 2249 328 57 21 chr9 32952767 32953782 -84908845 - L2 LINE L2 -2225 1089 38 533 332 96 21 chr9 32954146 32954523 -84908104 + L1MEc LINE L1 29 433 -5963 1369 256 17 37 chr9 32954677 32954697 -84907930 + L1M4 LINE L1 3483 3502 -2644 2238 98 7 0 chr9 32954697 32954993 -84907634 - AluSg SINE Alu -12 298 1 1369 256 17 37 chr9 32954993 32955378 -84907249 + L1M4 LINE L1 3502 3880 -2266 267 345 12 48 chr9 32955374 32955542 -84907085 - L1ME LINE L1 -5655 415 254 * 1054 263 91 53 chr9 32955639 32956204 -84906423 + MLT1E1 LTR MaLR 1 647 -7 346 259 43 79 chr9 32956206 32956345 -84906282 - L1ME LINE L1 -5900 170 37 4051 126 1 28 chr9 32956719 32957372 -84905255 - L1PA15 LINE L1 -4 6161 5526 2358 192 25 40 chr9 32958004 32958531 -84904096 + MLT2B1 LTR ERVL 2 520 0 1893 82 30 26 chr9 32958780 32959047 -84903580 - AluSg SINE Alu -8 302 35 33 0 0 0 chr9 32959365 32959398 -84903229 + AT_rich Low_complexity Low_complexity 1 33 0 2349 73 7 0 chr9 32959406 32959708 -84902919 + AluY SINE Alu 2 305 -6 187 336 172 8 chr9 32959719 32959841 -84902786 - MIR SINE MIR -89 173 32 5229 157 50 4 chr9 32960318 32960458 -84902169 + L1MA4 LINE L1 4542 4674 -1626 239 0 32 0 chr9 32960458 32960489 -84902138 + (CAA)n Simple_repeat Simple_repeat 2 33 0 5229 157 50 4 chr9 32960489 32962026 -84900601 + L1MA4 LINE L1 4674 6294 -6 305 289 133 23 chr9 32962632 32962760 -84899867 - L2 LINE L2 -1 3312 3171 249 188 16 31 chr9 32963187 32963251 -84899376 + CT-rich Low_complexity Low_complexity 3 65 0 25 0 0 0 chr9 32963847 32963872 -84898755 + AT_rich Low_complexity Low_complexity 1 25 0 2173 68 7 0 chr9 32964092 32964371 -84898256 + AluY SINE Alu 1 281 -30 702 162 8 0 chr9 32964526 32964643 -84897984 - AluJb SINE Alu -30 282 165 570 298 77 10 chr9 33066180 33066489 -84796138 - MLT1J2 LTR MaLR -83 367 29 232 317 89 16 chr9 33067313 33067436 -84795191 + L2 LINE L2 3141 3272 0 216 171 0 0 chr9 33067468 33067503 -84795124 + (CA)n Simple_repeat Simple_repeat 2 36 0 264 229 0 0 chr9 33067984 33068045 -84794582 - MER4-int LTR ERV1 -5443 1155 1095 705 241 128 108 chr9 33068757 33069164 -84793463 + MLT1E3 LTR MaLR 1 415 -209 258 274 105 24 chr9 33070853 33070977 -84791650 - MER117 DNA MER1_type -46 151 18 253 359 39 8 chr9 33071001 33071129 -84791498 - MIR SINE MIR -110 152 21 721 293 26 4 chr9 33071205 33071434 -84791193 + MIR SINE MIR 21 254 -8 302 248 146 38 chr9 33072472 33072578 -84790049 - MIR SINE MIR -63 145 38 996 184 110 18 chr9 33072624 33072842 -84789785 + MLT1E3 LTR MaLR 1 238 -386 231 206 27 14 chr9 33073148 33073221 -84789406 + (TA)n Simple_repeat Simple_repeat 2 75 0 1191 140 95 9 chr9 33075490 33075711 -84786916 + L1PA16 LINE L1 5926 6165 -1 279 331 40 0 chr9 33076187 33076311 -84786316 - L1MC/D LINE L1 -2226 5582 5454 49 43 0 0 chr9 33078244 33078314 -84784313 + AT_rich Low_complexity Low_complexity 1 70 0 231 204 0 0 chr9 33078460 33078514 -84784113 + (CA)n Simple_repeat Simple_repeat 2 55 0 646 271 23 0 chr9 33079538 33079715 -84782912 + L1M4 LINE L1 1480 1660 -4724 * 1741 252 36 2 chr9 33079714 33080183 -84782444 + L1M4 LINE L1 3970 4454 -1928 453 328 118 41 chr9 33081360 33081448 -84781179 - L3 LINE CR1 -872 705 625 2316 47 30 14 chr9 33081448 33081744 -84780883 + AluY SINE Alu 1 301 -10 453 328 118 41 chr9 33081744 33081993 -84780634 - L3 LINE CR1 -952 625 342 952 266 21 62 chr9 33083298 33083636 -84778991 - L2 LINE L2 -965 2349 2026 399 379 21 7 chr9 33083717 33083999 -84778628 - L1MEc LINE L1 -6077 319 34 187 143 0 0 chr9 33084603 33084631 -84777996 - L2 LINE L2 -17 3296 3269 2786 195 62 114 chr9 33085397 33086350 -84776277 - Charlie1a DNA MER1_type -1328 1433 547 8212 52 1 0 chr9 33086350 33087315 -84775312 - LTR5 LTR ERVK -3 966 1 2786 195 62 114 chr9 33087315 33087503 -84775124 - Charlie1a DNA MER1_type -2214 547 351 723 262 0 6 chr9 33087492 33087656 -84774971 - Charlie1a DNA MER1_type -1292 163 1 * 259 353 22 15 chr9 33088705 33088841 -84773786 + MIR SINE MIR 112 248 -14 181 365 14 0 chr9 33088971 33089045 -84773582 + L3 LINE CR1 1331 1405 -172 25 51 0 0 chr9 33089209 33089248 -84773379 + AT_rich Low_complexity Low_complexity 1 39 0 184 239 34 68 chr9 33090258 33090346 -84772281 + MIR SINE MIR 58 142 -66 414 290 82 29 chr9 33090630 33090875 -84771752 - MIR SINE MIR -1 261 4 225 355 15 65 chr9 33091067 33091267 -84771360 - MIR3 SINE MIR -12 196 7 22 0 0 0 chr9 33092497 33092519 -84770108 + AT_rich Low_complexity Low_complexity 1 22 0 711 308 65 12 chr9 33092933 33093313 -84769314 - MLT1H LTR MaLR -3 546 14 236 277 141 22 chr9 33093354 33093538 -84769089 + L1MC/D LINE L1 5597 5802 -2006 28 0 0 0 chr9 33093833 33093861 -84768766 + AT_rich Low_complexity Low_complexity 1 28 0 276 247 55 75 chr9 33093966 33094112 -84768515 - L2 LINE L2 -211 3061 2919 221 333 14 28 chr9 33094629 33094701 -84767926 + L2 LINE L2 427 497 -2817 623 216 15 0 chr9 33097577 33097711 -84764916 + L1ME LINE L1 5608 5743 -423 1349 73 21 0 chr9 33097733 33097924 -84764703 - L1PA7 LINE L1 0 6154 5960 1588 182 7 25 chr9 33098669 33098955 -84763672 - AluJo SINE Alu -31 281 1 305 308 62 0 chr9 33099184 33099330 -84763297 - LTR33 LTR ERVL 0 521 367 326 318 130 27 chr9 33099879 33100140 -84762487 - LTR33 LTR ERVL -228 293 6 278 206 103 37 chr9 33100616 33100723 -84761904 - L1ME3 LINE L1 -7 6155 6042 1328 245 164 19 chr9 33100940 33101458 -84761169 + L1MC4 LINE L1 7079 7521 -521 1972 123 13 20 chr9 33101458 33101759 -84760868 - AluSp SINE Alu -12 301 3 1328 245 164 19 chr9 33101759 33102011 -84760616 + L1MC4 LINE L1 7521 8042 0 1556 162 13 6 chr9 33102525 33102876 -84759751 - L1MB1 LINE L1 -640 5528 5173 3716 157 7 13 chr9 33102880 33103556 -84759071 + L1MB1 LINE L1 5497 6168 0 878 271 75 102 chr9 33103620 33104178 -84758449 + MLT1H1 LTR MaLR 5 547 -8 2010 226 51 40 chr9 33104400 33105005 -84757622 - LTR9 LTR ERV1 0 612 1 336 276 112 10 chr9 33105211 33105309 -84757318 + L2 LINE L2 3149 3256 -16 190 227 27 13 chr9 33105319 33105394 -84757233 + GA-rich Low_complexity Low_complexity 4 79 0 470 260 160 13 chr9 33105449 33105599 -84757028 + MER5B DNA MER1_type 1 172 -6 329 362 22 14 chr9 33106413 33106551 -84756076 + L2 LINE L2 3134 3272 0 227 331 90 7 chr9 33107132 33107277 -84755350 - MIR SINE MIR -3 259 103 596 232 83 39 chr9 33109734 33109988 -84752639 - L1M3 LINE L1 -1460 4686 4422 * 2533 96 52 0 chr9 33109971 33110355 -84752272 - L1PA11 LINE L1 -2 6172 5769 12667 150 32 22 chr9 33109973 33111436 -84751191 - L1PA11 LINE L1 -4 6170 4723 1864 172 33 28 chr9 33111436 33111796 -84750831 - THE1B LTR MaLR -2 362 1 12667 150 32 22 chr9 33111796 33113520 -84749107 - L1PA11 LINE L1 -1451 4723 2935 1813 134 7 0 chr9 33113520 33113796 -84748831 - AluSx SINE Alu 0 312 35 12667 150 32 22 chr9 33113796 33113830 -84748797 - L1PA11 LINE L1 -3239 2935 2903 218 394 170 0 chr9 33114387 33114552 -84748075 + L2 LINE L2 2439 2631 -683 335 337 23 23 chr9 33115691 33115863 -84746764 - L1ME LINE L1 -407 5714 5543 438 139 57 16 chr9 33116678 33116800 -84745827 + CT-rich Low_complexity Low_complexity 4 130 0 541 206 38 46 chr9 33116853 33116984 -84745643 - MER58A DNA MER1_type -15 209 80 354 241 60 90 chr9 33117330 33117463 -84745164 + L1MC4 LINE L1 6575 6703 -1339 295 264 42 0 chr9 33119318 33119390 -84743237 + MIR SINE MIR 110 184 -78 244 235 0 0 chr9 33119482 33119533 -84743094 + (CATATA)n Simple_repeat Simple_repeat 2 52 0 259 226 0 43 chr9 33119534 33119627 -84743000 + L1MC4 LINE L1 6614 6702 -1340 * 314 276 0 19 chr9 33119588 33119693 -84742934 - L1MC4 LINE L1 -1339 6703 6601 577 280 84 3 chr9 33120021 33120364 -84742263 + L1ME3A LINE L1 4967 5337 -809 * 1286 222 85 95 chr9 33120358 33120925 -84741702 + L1ME3A LINE L1 5602 6162 -8 365 295 40 27 chr9 33120953 33121102 -84741525 + L1MEd LINE L1 2 152 -5967 2234 110 10 0 chr9 33121315 33121624 -84741003 + AluSx SINE Alu 1 312 0 320 328 81 11 chr9 33122138 33122312 -84740315 + L1MC4a LINE L1 5766 5951 -1857 374 231 165 44 chr9 33124017 33124199 -84738428 + MLT1J2 LTR MaLR 2 205 -245 235 271 115 66 chr9 33124232 33124354 -84738273 + MLT1J2 LTR MaLR 279 406 -44 661 286 17 17 chr9 33124389 33124564 -84738063 - MER5A DNA MER1_type 0 189 15 352 237 30 69 chr9 33125271 33125402 -84737225 + MIR SINE MIR 9 134 -128 600 211 18 0 chr9 33125524 33125633 -84736994 + MER58A DNA MER1_type 5 115 0 350 148 0 0 chr9 33125640 33125694 -84736933 + MER58A DNA MER1_type 171 224 0 1666 178 5 98 chr9 33126248 33126647 -84735980 - MLT1A1 LTR MaLR -3 362 1 660 259 64 70 chr9 33126784 33127127 -84735500 - MLT1I LTR MaLR 0 409 69 391 260 58 0 chr9 33127325 33127429 -84735198 - MER5B DNA MER1_type 0 178 69 713 247 14 115 chr9 33128874 33129222 -84733405 - MER46C DNA MER2_type -24 314 2 253 167 15 30 chr9 33129929 33129995 -84732632 - L1MEc LINE L1 -5214 1182 1118 1105 288 32 14 chr9 33130050 33130421 -84732206 + L1ME1 LINE L1 34 411 -5985 1244 244 83 47 chr9 33130475 33131156 -84731471 - L1MEc LINE L1 -4785 1430 775 679 249 71 58 chr9 33131160 33131778 -84730849 + L1ME1 LINE L1 2991 6230 -5 388 300 120 7 chr9 33132313 33132463 -84730164 + MIR SINE MIR 80 246 -16 1091 221 108 40 chr9 33132872 33133243 -84729384 + MSTD LTR MaLR 1 396 0 193 297 40 14 chr9 33133464 33133538 -84729089 - MIR SINE MIR -62 146 71 238 253 11 11 chr9 33134003 33134098 -84728529 + GA-rich Low_complexity Low_complexity 2 96 0 667 288 56 14 chr9 33134603 33134818 -84727809 - MIR SINE MIR -30 232 9 436 343 34 0 chr9 33135624 33135799 -84726828 - MIR3 SINE MIR -9 199 19 23 33 0 0 chr9 33136203 33136233 -84726394 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr9 33136525 33136547 -84726080 + AT_rich Low_complexity Low_complexity 1 22 0 1613 82 43 0 chr9 33137175 33137407 -84725220 - L1PA11 LINE L1 0 6174 5933 925 189 12 0 chr9 33137412 33137576 -84725051 - MER2 DNA MER2_type -173 172 7 6609 71 3 9 chr9 33138012 33139122 -84723505 + L1PA7 LINE L1 5048 6152 -2 486 290 91 60 chr9 33139463 33139860 -84722767 + MLT1L LTR MaLR 200 608 -7 257 100 100 0 chr9 33140163 33140213 -84722414 - MLT2A1 LTR ERVL 0 453 399 208 183 0 28 chr9 33140311 33140382 -84722245 + (TA)n Simple_repeat Simple_repeat 1 69 0 2695 86 21 10 chr9 33140398 33140781 -84721846 - MLT2A1 LTR ERVL -57 387 1 359 312 108 31 chr9 33141344 33141423 -84721204 - L1MC/D LINE L1 -867 5445 5374 2249 81 0 29 chr9 33141423 33141730 -84720897 - AluY SINE Alu -13 298 1 359 312 108 31 chr9 33141730 33142173 -84720454 - L1MC/D LINE L1 -938 5374 5254 29 28 0 0 chr9 33142182 33142218 -84720409 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr9 33142783 33142805 -84719822 + AT_rich Low_complexity Low_complexity 1 22 0 921 187 73 4 chr9 33143829 33144168 -84718459 + MSTD LTR MaLR 1 396 0 278 322 85 17 chr9 33145907 33146084 -84716543 + MIR SINE MIR 18 206 -56 29 70 0 0 chr9 33147786 33147843 -84714784 + AT_rich Low_complexity Low_complexity 1 57 0 231 321 27 27 chr9 33147966 33148078 -84714549 + L2 LINE L2 688 799 -2515 192 364 59 0 chr9 33148127 33148245 -84714382 + L2 LINE L2 962 1086 -2228 2088 224 25 7 chr9 33148284 33148717 -84713910 - MER74C LTR ERVL 0 460 20 5447 172 28 17 chr9 33148719 33150047 -84712580 + L1MA5 LINE L1 4963 6300 0 229 357 0 0 chr9 33150104 33150174 -84712453 + L2 LINE L2 1127 1196 -2118 1058 305 144 6 chr9 33150221 33150742 -84711885 + L2 LINE L2 1721 2313 -1001 263 235 106 12 chr9 33150747 33150832 -84711795 + MLT1L LTR MaLR 1 93 -522 1466 299 17 10 chr9 33151357 33151765 -84710862 - LTR16C LTR ERVL -7 484 74 254 361 87 11 chr9 33152062 33152245 -84710382 - ERVL LTR ERVL -601 5163 4967 377 353 52 46 chr9 33152252 33152728 -84709899 - ERVL LTR ERVL -832 4822 4344 264 286 8 88 chr9 33153338 33153467 -84709160 - MIR SINE MIR -68 140 38 1224 246 34 82 chr9 33154811 33155335 -84707292 + LTR53 LTR ERVL 21 519 0 334 262 107 30 chr9 33155859 33156027 -84706600 - L1M4 LINE L1 -1929 4217 4037 299 295 105 21 chr9 33156750 33156845 -84705782 + L2 LINE L2 3197 3299 -14 1517 166 232 27 chr9 33157931 33158298 -84704329 + MLT2B1 LTR ERVL 1 442 -78 231 125 0 0 chr9 33158329 33158369 -84704258 + (TC)n Simple_repeat Simple_repeat 2 41 0 204 275 66 66 chr9 33158598 33158689 -84703938 - L3 LINE CR1 -2 1575 1485 26 64 0 0 chr9 33158994 33159041 -84703586 + AT_rich Low_complexity Low_complexity 1 47 0 27 29 0 0 chr9 33159150 33159184 -84703443 + AT_rich Low_complexity Low_complexity 1 34 0 1595 184 86 89 chr9 33159309 33159858 -84702769 + MLT2B3 LTR ERVL 1 547 -7 23 33 0 0 chr9 33160094 33160124 -84702503 + AT_rich Low_complexity Low_complexity 1 30 0 1351 243 0 0 chr9 33160135 33160415 -84702212 - AluJo SINE Alu -31 281 2 245 240 31 31 chr9 33160501 33160597 -84702030 + L1ME1 LINE L1 4596 4691 -1455 6298 97 40 9 chr9 33160593 33161689 -84700938 - L1PA13 LINE L1 -2 6161 5047 3405 5 8 0 chr9 33161827 33162217 -84700410 - L1PA4 LINE L1 -4 6151 5759 4277 27 2 0 chr9 33162217 33162826 -84699801 + L1PA4 LINE L1 5153 5762 -393 286 354 67 14 chr9 33163091 33163314 -84699313 + L1ME3A LINE L1 5649 5883 -287 2768 250 41 14 chr9 33163808 33164609 -84698018 + L1ME1 LINE L1 5338 6160 -6 183 80 0 0 chr9 33165093 33165118 -84697509 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 231 257 83 55 chr9 33165155 33165264 -84697363 - MIR SINE MIR -98 164 53 208 233 83 0 chr9 33165304 33165364 -84697263 + MIR3 SINE MIR 102 166 -42 242 270 32 0 chr9 33167040 33167103 -84695524 + MLT1H LTR MaLR 23 87 -462 768 333 74 17 chr9 33167959 33168537 -84694090 - L2 LINE L2 -42 3271 2660 378 262 124 64 chr9 33168885 33169087 -84693540 - LTR33A LTR ERVL -345 178 1 1736 296 23 54 chr9 33169360 33170099 -84692528 - L2 LINE L2 -688 2626 1911 1402 293 80 43 chr9 33170104 33170868 -84691759 - HERV16 LTR ERVL -4192 804 13 696 349 31 14 chr9 33170919 33171274 -84691353 - LTR16A LTR ERVL -55 395 35 384 348 61 11 chr9 33172113 33172294 -84690333 - MIR3 SINE MIR -6 202 13 256 398 42 8 chr9 33173560 33173678 -84688949 - L2 LINE L2 -8 3264 3143 22 35 0 0 chr9 33174018 33174047 -84688580 + AT_rich Low_complexity Low_complexity 1 29 0 232 238 25 12 chr9 33174093 33174173 -84688454 - L1ME4a LINE L1 -63 6058 5978 181 152 22 87 chr9 33174177 33174223 -84688404 - L2 LINE L2 0 3313 3271 1541 164 66 14 chr9 33174650 33174937 -84687690 + AluSx SINE Alu 1 302 -10 525 325 13 45 chr9 33175178 33175335 -84687292 + L2 LINE L2 3100 3251 -21 1020 139 36 6 chr9 33176698 33176864 -84685763 + MLT2B1 LTR ERVL 3 173 -347 631 263 78 0 chr9 33176882 33177061 -84685566 + MLT2B2 LTR ERVL 323 515 0 2124 133 36 28 chr9 33177813 33178174 -84684453 - THE1B LTR MaLR 0 364 1 2258 64 10 16 chr9 33178378 33178690 -84683937 + AluY SINE Alu 2 311 0 301 239 69 94 chr9 33179112 33179271 -84683356 - HAL1b LINE L1 -1125 223 69 21 0 0 0 chr9 33180578 33180599 -84682028 + AT_rich Low_complexity Low_complexity 1 21 0 632 104 10 0 chr9 33181224 33181320 -84681307 - L1MB5 LINE L1 -10 6164 6068 435 134 0 0 chr9 33181376 33181443 -84681184 - MADE1 DNA Mariner -12 68 2 1115 211 160 56 chr9 33181892 33181971 -84680656 - Charlie2 DNA MER1_type -309 2553 2484 2302 92 3 16 chr9 33181971 33182286 -84680341 + AluSp SINE Alu 3 313 0 1115 211 160 56 chr9 33182286 33182812 -84679815 - Charlie2 DNA MER1_type -378 2484 1885 565 279 17 6 chr9 33182816 33182988 -84679639 - L1M4 LINE L1 -1211 5577 5404 * 3625 193 31 34 chr9 33182978 33183904 -84678723 - L1M4 LINE L1 -2086 4702 3779 1384 312 53 37 chr9 33184287 33184906 -84677721 - L1M4 LINE L1 -6148 641 13 3909 234 56 28 chr9 33184922 33185322 -84677305 - L1M4 LINE L1 -1956 4688 4301 1460 194 67 0 chr9 33185322 33185438 -84677189 + AluJo SINE Alu 1 108 -204 189 0 0 0 chr9 33185438 33185459 -84677168 + (TAA)n Simple_repeat Simple_repeat 2 22 0 1460 194 67 0 chr9 33185459 33185625 -84677002 + AluJo SINE Alu 108 302 -10 3909 234 56 28 chr9 33185625 33186606 -84676021 - L1M4 LINE L1 -2343 4301 3268 1872 249 83 42 chr9 33186603 33187242 -84675385 - L1M4 LINE L1 -5870 672 8 * 273 29 0 0 chr9 33187889 33187923 -84674704 + (GA)n Simple_repeat Simple_repeat 1 34 0 367 366 60 48 chr9 33188448 33188866 -84673761 + L2 LINE L2 2552 2974 -340 223 338 52 0 chr9 33189025 33189102 -84673525 + L2 LINE L2 3184 3264 -49 213 244 67 22 chr9 33189197 33189287 -84673340 - MIR SINE MIR -50 212 119 220 186 0 0 chr9 33189802 33189845 -84672782 + (TG)n Simple_repeat Simple_repeat 2 44 0 481 250 27 20 chr9 33191043 33191191 -84671436 - L1ME2 LINE L1 -1922 4224 4076 289 294 33 28 chr9 33191194 33191374 -84671253 + L1ME2 LINE L1 4218 4398 -1748 1626 200 20 0 chr9 33191376 33191671 -84670956 + AluJo SINE Alu 1 301 -11 453 297 62 39 chr9 33191716 33192053 -84670574 + L1ME2 LINE L1 5786 6130 -34 1164 172 38 0 chr9 33192197 33192406 -84670221 + AluJb SINE Alu 1 217 -95 22 0 0 0 chr9 33193281 33193303 -84669324 + AT_rich Low_complexity Low_complexity 1 22 0 208 308 56 56 chr9 33193342 33193449 -84669178 + L2 LINE L2 3156 3262 -10 2547 55 0 3 chr9 33193751 33194059 -84668568 + AluY SINE Alu 1 307 -4 29 28 0 0 chr9 33195371 33195407 -84667220 + AT_rich Low_complexity Low_complexity 1 36 0 2045 210 115 0 chr9 33197282 33197735 -84664892 - MLT1D LTR MaLR 0 505 1 283 343 0 28 chr9 33197873 33197981 -84664646 + MIR SINE MIR 16 120 -88 633 235 127 117 chr9 33198758 33199278 -84663349 + MLT1H LTR MaLR 9 533 -16 1946 217 103 110 chr9 33199421 33200169 -84662458 + MER21B LTR ERV1 10 752 -111 310 326 8 0 chr9 33200698 33200827 -84661800 + (TA)n Simple_repeat Simple_repeat 2 131 0 460 214 22 0 chr9 33201038 33201127 -84661500 - MER76 LTR ERV 0 688 598 3946 178 42 30 chr9 33201129 33201590 -84661037 + L1MA9 LINE L1 4249 4703 -1443 2026 39 24 0 chr9 33201590 33201843 -84660784 + L1PA4 LINE L1 5896 6155 0 3946 178 42 30 chr9 33201843 33202284 -84660343 + L1MA9 LINE L1 4703 5162 -984 1017 71 0 8 chr9 33202286 33202413 -84660214 + AluSg SINE Alu 3 128 -182 2917 147 47 56 chr9 33202415 33203027 -84659600 + L1MA9 LINE L1 5632 6238 -74 261 0 0 0 chr9 33203044 33203073 -84659554 + (TAA)n Simple_repeat Simple_repeat 3 31 0 392 238 24 95 chr9 33203111 33203279 -84659348 - MER76 LTR ERV -69 619 464 7551 27 7 0 chr9 33203310 33204816 -84657811 - L1PA3 LINE L1 -1 6154 4642 1850 139 9 54 chr9 33205835 33206151 -84656476 - AluSq SINE Alu -11 302 1 358 186 29 0 chr9 33206419 33206489 -84656138 + MLT1L LTR MaLR 140 211 -404 328 384 0 23 chr9 33206618 33206790 -84655837 + ERVL LTR ERVL 2425 2592 -3172 298 319 130 49 chr9 33207111 33207456 -84655171 + MLT1J2 LTR MaLR 73 445 -5 222 293 13 13 chr9 33208163 33208238 -84654389 + L2 LINE L2 2662 2736 -578 393 277 104 30 chr9 33209824 33210055 -84652572 - LTR33A LTR ERVL -56 467 220 252 326 131 49 chr9 33210169 33210414 -84652213 - LTR33A LTR ERVL -258 265 1 183 346 50 30 chr9 33210842 33210943 -84651684 - MIR SINE MIR -113 149 47 11535 190 50 34 chr9 33211326 33215525 -84647102 - L1MA4A LINE L1 -3 7362 3065 2447 167 17 13 chr9 33215525 33215986 -84646641 - MER4C LTR ERV1 -2 463 1 11535 190 50 34 chr9 33215986 33216916 -84645711 - L1MA4A LINE L1 -4300 3065 2152 2420 118 11 6 chr9 33216917 33217265 -84645362 - THE1B LTR MaLR 0 364 15 326 118 0 0 chr9 33217261 33217312 -84645315 - THE1B LTR MaLR -230 134 84 * 2373 283 111 14 chr9 33217315 33218236 -84644391 - L1MA4A LINE L1 -5537 1672 246 * 4062 173 9 13 chr9 33218234 33218928 -84643699 - THE1-int LTR MaLR -263 1317 627 1124 144 140 22 chr9 33218928 33219157 -84643470 - MSTA LTR MaLR -172 256 1 694 264 35 0 chr9 33219158 33219355 -84643272 - L1MA4A LINE L1 -6979 230 27 205 100 40 0 chr9 33219817 33219867 -84642760 + (TA)n Simple_repeat Simple_repeat 2 53 0 1522 106 0 0 chr9 33220391 33220589 -84642038 - AluSg/x SINE Alu -15 297 100 285 326 61 14 chr9 33221261 33221408 -84641219 + L1MC4a LINE L1 5771 5924 -1884 378 0 0 0 chr9 33221542 33221584 -84641043 + (CA)n Simple_repeat Simple_repeat 2 43 0 33 0 0 0 chr9 33221791 33221824 -84640803 + AT_rich Low_complexity Low_complexity 1 33 0 228 250 0 0 chr9 33222444 33222492 -84640135 + L1MDa LINE L1 655 702 -5838 2818 157 25 4 chr9 33222510 33222995 -84639632 - LOR1a LTR ERV1 -2 495 1 218 179 0 0 chr9 33223190 33223229 -84639398 + (TG)n Simple_repeat Simple_repeat 2 40 0 475 174 0 0 chr9 33223343 33223429 -84639198 + L1PA15-16 LINE L1 1498 1583 -5266 2896 182 18 14 chr9 33223431 33224003 -84638624 + L1PA16 LINE L1 5476 6049 -117 4896 59 11 5 chr9 33224003 33225121 -84637506 + MER11A LTR ERVK 1 1266 0 55634 79 5 2 chr9 33225121 33232316 -84630311 + HERVK11 LTR ERVK 1 7214 -739 5340 254 35 14 chr9 33232322 33234104 -84628523 + L1 LINE L1 2299 4117 -2029 * 8532 135 8 34 chr9 33234080 33235422 -84627205 - THE1C-int LTR MaLR -273 1307 1 2294 148 5 13 chr9 33235422 33235799 -84626828 - THE1C LTR MaLR 0 375 2 1916 159 39 8 chr9 33235801 33236165 -84626462 + L1PA16 LINE L1 5789 6163 -3 1605 151 12 0 chr9 33236166 33236425 -84626202 + L1PB4 LINE L1 5891 6152 -4 259 230 35 46 chr9 33236462 33236549 -84626078 + HAL1 LINE L1 1627 1712 -795 2631 126 3 0 chr9 33237423 33237797 -84624830 - THE1C LTR MaLR 0 375 1 541 268 26 20 chr9 33237825 33237978 -84624649 - MLT1I LTR MaLR -208 201 48 294 180 0 0 chr9 33238645 33238706 -84623921 + (TA)n Simple_repeat Simple_repeat 2 62 0 207 294 0 20 chr9 33238813 33238864 -84623763 + L2 LINE L2 3243 3292 -21 929 165 24 12 chr9 33239150 33239320 -84623307 - MER2 DNA MER2_type -172 173 2 566 254 77 4 chr9 33239705 33239975 -84622652 - L1MB4 LINE L1 -34 6146 5825 202 264 14 14 chr9 33240036 33240108 -84622519 + T-rich Low_complexity Low_complexity 3 74 0 10776 130 25 12 chr9 33241247 33243016 -84619611 + Tigger1 DNA MER2_type 626 2417 -1 231 274 16 32 chr9 33243694 33243818 -84618809 + (CAGAGA)n Simple_repeat Simple_repeat 4 125 0 2022 154 19 47 chr9 33244274 33244638 -84617989 + LTR18A LTR ERVL 2 355 -2 21 36 0 0 chr9 33244783 33244811 -84617816 + AT_rich Low_complexity Low_complexity 1 28 0 255 316 23 30 chr9 33244980 33245113 -84617514 - MLT1L LTR MaLR -8 607 476 330 232 134 108 chr9 33245406 33245600 -84617027 - MLT1L LTR MaLR -414 201 3 218 133 0 22 chr9 33245600 33245645 -84616982 + (CAT)n Simple_repeat Simple_repeat 3 46 0 229 347 0 0 chr9 33245942 33246014 -84616613 + L2 LINE L2 3234 3305 -8 183 129 0 0 chr9 33246471 33246502 -84616125 + (TA)n Simple_repeat Simple_repeat 1 31 0 21 36 0 0 chr9 33247321 33247349 -84615278 + AT_rich Low_complexity Low_complexity 1 28 0 25 65 0 0 chr9 33247588 33247634 -84614993 + AT_rich Low_complexity Low_complexity 1 46 0 21 57 0 0 chr9 33248570 33248605 -84614022 + AT_rich Low_complexity Low_complexity 1 35 0 30 45 0 0 chr9 33248918 33248962 -84613665 + AT_rich Low_complexity Low_complexity 1 44 0 1351 172 27 8 chr9 33249482 33249744 -84612883 + L1MB3 LINE L1 5908 6174 -9 660 203 0 8 chr9 33249774 33249907 -84612720 + FLAM_C SINE Alu 2 133 0 21 57 0 0 chr9 33250413 33250448 -84612179 + AT_rich Low_complexity Low_complexity 1 35 0 1089 260 14 67 chr9 33250711 33251069 -84611558 + MER67D LTR ERV1 1 339 -175 6059 206 26 25 chr9 33251990 33253899 -84608728 + L1MA4 LINE L1 17 1917 -4065 8384 122 42 3 chr9 33253903 33255156 -84607471 + THE1B-int LTR MaLR 280 1580 0 2217 133 33 28 chr9 33255156 33255518 -84607109 + THE1B LTR MaLR 1 364 0 7635 214 38 54 chr9 33255518 33256823 -84605804 + L1MA4 LINE L1 2081 3406 -3076 1638 196 7 17 chr9 33256823 33257114 -84605513 + AluJb SINE Alu 1 288 -24 7635 214 38 54 chr9 33257114 33259978 -84602649 + L1MA4 LINE L1 3406 6116 -366 557 96 0 0 chr9 33259981 33260054 -84602573 - LTR1 LTR ERV1 0 785 713 2695 221 15 38 chr9 33260054 33260657 -84601970 - HUERS-P2 LTR ERV1 -2099 989 401 779 172 42 48 chr9 33260737 33260771 -84601856 - HUERS-P2 LTR ERV1 -2715 373 340 2355 47 10 3 chr9 33260771 33261067 -84601560 - AluY SINE Alu -13 298 1 779 172 42 48 chr9 33261067 33261340 -84601287 - HUERS-P2 LTR ERV1 -2748 340 5 4030 122 37 79 chr9 33261343 33262163 -84600464 - LTR1 LTR ERV1 0 785 1 1580 203 3 29 chr9 33262163 33262538 -84600089 + L1MA4 LINE L1 6116 6480 -2 359 296 166 14 chr9 33262829 33263052 -84599575 + L1ME4a LINE L1 5789 6045 -76 221 132 0 75 chr9 33263139 33263192 -84599435 + (TTTTTA)n Simple_repeat Simple_repeat 1 49 0 22 35 0 0 chr9 33263474 33263503 -84599124 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr9 33263909 33263930 -84598697 + AT_rich Low_complexity Low_complexity 1 21 0 5642 141 14 10 chr9 33264267 33265209 -84597418 - Tigger1 DNA MER2_type 0 2418 1473 1362 181 59 7 chr9 33265210 33265480 -84597147 - AluJo SINE Alu -17 295 12 9070 141 25 2 chr9 33265489 33266941 -84595686 - Tigger1 DNA MER2_type -932 1486 2 918 62 0 0 chr9 33268034 33268146 -84594481 + L1PA7 LINE L1 6033 6144 -10 267 306 104 104 chr9 33269544 33270210 -84592417 + L2 LINE L2 1716 2381 -933 296 363 81 22 chr9 33270634 33270907 -84591720 + L2 LINE L2 2563 2851 -463 * 590 279 36 27 chr9 33270904 33271126 -84591501 + MIR SINE MIR 39 262 0 183 278 62 10 chr9 33271326 33271423 -84591204 - L2 LINE L2 -94 3219 3118 2237 111 3 0 chr9 33271622 33271920 -84590707 + AluSg SINE Alu 3 301 -9 225 0 0 0 chr9 33272408 33272433 -84590194 + (A)n Simple_repeat Simple_repeat 1 25 0 7090 193 134 16 chr9 33272824 33274393 -84588234 + MER52A LTR ERV1 1 1755 0 387 327 51 33 chr9 33276249 33276463 -84586164 + L1MC/D LINE L1 5425 5642 -2166 249 286 57 29 chr9 33276627 33276732 -84585895 - L2 LINE L2 -1292 2022 1915 26 50 0 0 chr9 33276732 33276772 -84585855 + AT_rich Low_complexity Low_complexity 1 40 0 2294 97 0 7 chr9 33278364 33278664 -84583963 + AluSc SINE Alu 1 298 -11 2146 128 0 0 chr9 33278964 33279269 -84583358 + AluSx SINE Alu 1 305 -7 7024 118 2 5 chr9 33279272 33280415 -84582212 + L1MA2 LINE L1 5165 6304 0 3083 164 18 9 chr9 33280915 33281471 -84581156 + MER67C LTR ERV1 150 710 0 275 345 20 20 chr9 33281497 33281645 -84580982 + L2 LINE L2 2631 2778 -536 * 434 252 19 0 chr9 33281644 33281747 -84580880 - MIR SINE MIR -11 251 147 4961 152 23 22 chr9 33282360 33283362 -84579265 + L1PB4 LINE L1 5153 6152 -4 1069 226 124 3 chr9 33283872 33284186 -84578441 - MER119 DNA MER1_type 0 583 232 346 317 111 31 chr9 33284235 33284437 -84578190 + MIR SINE MIR 8 228 -34 180 0 0 0 chr9 33285469 33285489 -84577138 + (A)n Simple_repeat Simple_repeat 1 20 0 522 253 143 11 chr9 33286906 33287088 -84575539 - MIR SINE MIR -34 228 23 422 244 46 30 chr9 33287562 33287693 -84574934 - MER94 DNA DNA 0 134 2 21 36 0 0 chr9 33292276 33292304 -84570323 + AT_rich Low_complexity Low_complexity 1 28 0 219 24 49 24 chr9 33292509 33292550 -84570077 + (TA)n Simple_repeat Simple_repeat 1 42 0 24 0 0 0 chr9 33292788 33292812 -84569815 + AT_rich Low_complexity Low_complexity 1 24 0 324 313 116 25 chr9 33293528 33293726 -84568901 + HAL1b LINE L1 263 478 -870 21 0 0 0 chr9 33293920 33293941 -84568686 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr9 33294010 33294036 -84568591 + AT_rich Low_complexity Low_complexity 1 26 0 27 29 0 0 chr9 33294139 33294173 -84568454 + AT_rich Low_complexity Low_complexity 1 34 0 229 223 91 25 chr9 33294234 33294355 -84568272 + L1M4 LINE L1 4132 4260 -1886 27 49 0 0 chr9 33294382 33294423 -84568204 + AT_rich Low_complexity Low_complexity 1 41 0 292 310 62 18 chr9 33296518 33296631 -84565996 - MIR SINE MIR -131 131 14 295 331 88 14 chr9 33296961 33297109 -84565518 + MIR3 SINE MIR 29 187 -21 26 0 0 0 chr9 33297786 33297812 -84564815 + AT_rich Low_complexity Low_complexity 1 26 0 25735 69 7 0 chr9 33299598 33302957 -84559670 - L1P LINE L1 -2753 3393 11 21 0 0 0 chr9 33302973 33302994 -84559633 + AT_rich Low_complexity Low_complexity 1 21 0 221 273 169 0 chr9 33304110 33304187 -84558440 + L2 LINE L2 3224 3313 0 296 245 10 31 chr9 33304518 33304616 -84558011 + MIR SINE MIR 27 122 -86 2073 114 14 0 chr9 33305517 33305806 -84556821 - AluSx SINE Alu -19 293 1 238 311 148 8 chr9 33306554 33306676 -84555951 - MIR SINE MIR -122 140 2 805 182 89 53 chr9 33306967 33307192 -84555435 - MER46A DNA MER2_type -2 234 2 346 359 43 0 chr9 33307379 33307496 -84555131 + MIR SINE MIR 33 154 -108 495 296 92 7 chr9 33308691 33308843 -84553784 - MIR SINE MIR -64 198 34 625 265 25 0 chr9 33310771 33310933 -84551694 - L2 LINE L2 -659 2655 2490 311 310 23 54 chr9 33312397 33312526 -84550101 + MIR SINE MIR 16 140 -122 5675 72 1 1 chr9 33312620 33313356 -84549271 - L1PA7 LINE L1 -4 6150 5415 490 319 70 25 chr9 33313784 33314098 -84548529 + L1ME4a LINE L1 5577 5904 -217 1824 167 60 6 chr9 33314098 33314445 -84548182 - MER47A DNA MER2_type 0 366 1 3598 170 16 3 chr9 33314454 33315061 -84547566 + Tigger7 DNA MER2_type 1 615 -1872 1712 148 65 6 chr9 33315062 33315386 -84547241 + MER61A LTR ERV1 1 343 0 2547 186 46 11 chr9 33315387 33315913 -84546714 + MER61A-int LTR ERV1 2 545 -4672 2489 66 0 0 chr9 33315984 33316286 -84546341 + AluSc SINE Alu 3 304 -5 21 57 0 0 chr9 33317569 33317604 -84545023 + AT_rich Low_complexity Low_complexity 1 35 0 31 96 0 0 chr9 33318116 33318210 -84544417 + AT_rich Low_complexity Low_complexity 1 94 0 374 268 60 38 chr9 33318667 33318850 -84543777 + L1ME LINE L1 5359 5545 -576 285 301 96 45 chr9 33319329 33319528 -84543099 - L1ME3A LINE L1 -1 6169 5961 848 304 91 43 chr9 33319585 33320190 -84542437 - L1ME3A LINE L1 -214 5956 5323 * 2371 309 49 30 chr9 33320183 33321063 -84541564 + L1PA15 LINE L1 6 902 -5885 * 13541 214 27 32 chr9 33321046 33326668 -84535959 + L1PA15 LINE L1 1221 6813 -3 398 274 261 14 chr9 33326724 33327210 -84535417 - L1ME3A LINE L1 -810 5336 4731 23 0 0 0 chr9 33327900 33327923 -84534704 + AT_rich Low_complexity Low_complexity 1 23 0 243 347 40 5 chr9 33328142 33328341 -84534286 + L1 LINE L1 3628 3833 -2313 8164 177 32 12 chr9 33328870 33331414 -84531213 - L1MA5A LINE L1 -8 6991 4393 9398 80 1 2 chr9 33331414 33333463 -84529164 - L1PA4 LINE L1 0 6155 4106 8164 177 32 12 chr9 33333463 33333482 -84529145 - L1MA5A LINE L1 -2606 4393 4376 997 205 9 5 chr9 33334105 33334329 -84528298 + L1MA7 LINE L1 6061 6285 -6 30 59 0 0 chr9 33334525 33334576 -84528051 + AT_rich Low_complexity Low_complexity 1 51 0 13736 193 66 16 chr9 33335102 33339298 -84523329 - L1MA5A LINE L1 -2437 4411 1 229 227 61 0 chr9 33339747 33339813 -84522814 - HsTC2 DNA Tc2 -1605 293 224 320 309 75 30 chr9 33340225 33340426 -84522201 - L1ME LINE L1 -350 5771 5562 227 217 0 33 chr9 33341563 33341623 -84521004 + L1MB1 LINE L1 6020 6077 -91 573 188 0 0 chr9 33341633 33341745 -84520882 + L1MB1 LINE L1 6044 6155 -13 210 253 121 12 chr9 33341822 33341905 -84520722 - MER5B DNA MER1_type 0 178 87 212 281 0 10 chr9 33342101 33342197 -84520430 + CT-rich Low_complexity Low_complexity 2 96 0 188 373 78 0 chr9 33342392 33342494 -84520133 + L2 LINE L2 3112 3221 -51 750 318 5 9 chr9 33343350 33343564 -84519063 + MIR SINE MIR 35 247 -15 273 412 8 0 chr9 33344215 33344334 -84518293 - L2 LINE L2 0 3272 3153 21 71 0 0 chr9 33344348 33344390 -84518237 + AT_rich Low_complexity Low_complexity 1 42 0 49 60 0 0 chr9 33344452 33344536 -84518091 + AT_rich Low_complexity Low_complexity 1 84 0 8798 125 29 4 chr9 33344742 33346859 -84515768 - L1PA11 LINE L1 -16 6158 3854 186 103 0 0 chr9 33347213 33347242 -84515385 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 30 27 0 0 chr9 33347427 33347464 -84515163 + AT_rich Low_complexity Low_complexity 1 37 0 25 31 0 0 chr9 33347548 33347580 -84515047 + AT_rich Low_complexity Low_complexity 1 32 0 644 169 7 63 chr9 33347580 33347722 -84514905 - AluJo SINE Alu -178 134 1 264 343 59 15 chr9 33348022 33348226 -84514401 - L1MC/D LINE L1 -1927 5881 5669 2452 66 0 3 chr9 33348532 33348834 -84513793 + AluY SINE Alu 1 301 -10 22 35 0 0 chr9 33348872 33348901 -84513726 + AT_rich Low_complexity Low_complexity 1 29 0 268 322 0 35 chr9 33349338 33349425 -84513202 - HAL1b LINE L1 -803 545 462 981 40 0 16 chr9 33349443 33349569 -84513058 - L1PA6 LINE L1 -4 6150 6027 227 228 14 41 chr9 33349700 33349845 -84512782 + (TAA)n Simple_repeat Simple_repeat 2 142 0 675 93 56 0 chr9 33350876 33350984 -84511643 - L1MA3 LINE L1 0 6305 6192 711 101 0 18 chr9 33350984 33351107 -84511520 + L1MA3 LINE L1 6125 6245 -58 536 155 0 0 chr9 33351693 33351790 -84510837 + L1MA9 LINE L1 6181 6277 -35 7227 41 7 0 chr9 33352226 33353846 -84508781 - L1PA5 LINE L1 -11 6143 4517 30 59 0 0 chr9 33354106 33354157 -84508470 + AT_rich Low_complexity Low_complexity 1 51 0 458 258 93 41 chr9 33355301 33355495 -84507132 + MIR SINE MIR 24 227 -35 1205 258 105 40 chr9 33355510 33356033 -84506594 - MLT1E1 LTR MaLR 0 654 98 270 0 0 0 chr9 33356063 33356093 -84506534 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 2260 142 11 0 chr9 33356093 33356460 -84506167 - L1PB1 LINE L1 -5 6146 5776 3470 136 17 8 chr9 33356470 33357315 -84505312 + L1PB1 LINE L1 4919 5773 -378 2026 127 3 10 chr9 33357863 33358162 -84504465 + AluSg SINE Alu 1 297 -13 1926 174 31 6 chr9 33358387 33358743 -84503884 + MSTB LTR MaLR 1 365 -61 1016 249 19 8 chr9 33358785 33359042 -84503585 - AluJb SINE Alu -52 260 1 345 138 35 0 chr9 33359047 33359105 -84503522 + MSTB LTR MaLR 366 425 -1 237 310 23 32 chr9 33359195 33359293 -84503334 - MIR SINE MIR -57 151 54 900 133 28 7 chr9 33359780 33359923 -84502704 + MER30 DNA MER1_type 85 230 0 3137 177 25 13 chr9 33359924 33360604 -84502023 - L1 LINE L1 -1901 4245 3472 189 0 0 0 chr9 33360608 33360629 -84501998 + (TG)n Simple_repeat Simple_repeat 2 22 0 227 93 23 0 chr9 33360632 33360675 -84501952 + (TA)n Simple_repeat Simple_repeat 1 44 0 669 200 35 58 chr9 33360675 33360905 -84501722 - L1MDb LINE L1 -4961 1119 896 3304 81 7 2 chr9 33360936 33361369 -84501258 + LTR3b LTR ERVK 3 437 0 557 176 9 9 chr9 33361480 33361588 -84501039 + HERVK3 LTR ERVK 55 162 -7081 * 1112 146 1 1 chr9 33361584 33361778 -84500849 + HERVK3 LTR ERVK 5188 5579 -366 3432 76 7 0 chr9 33361816 33362250 -84500377 + LTR3b LTR ERVK 1 437 0 415 300 20 10 chr9 33362277 33362477 -84500150 - L1MDb LINE L1 -5182 888 687 230 79 0 26 chr9 33362791 33362829 -84499798 + (CAAAA)n Simple_repeat Simple_repeat 4 40 0 660 301 136 98 chr9 33362980 33363978 -84498649 - HAL1 LINE L1 -1375 1132 93 1450 156 71 97 chr9 33363978 33364413 -84498214 + MSTC LTR MaLR 3 426 -2 660 301 136 98 chr9 33364413 33364439 -84498188 - HAL1 LINE L1 -2414 93 69 21 36 0 0 chr9 33366215 33366243 -84496384 + AT_rich Low_complexity Low_complexity 1 28 0 445 230 26 18 chr9 33366251 33366364 -84496263 + MIR SINE MIR 147 260 -2 1390 113 66 14 chr9 33367425 33367638 -84494989 - AluSq SINE Alu -89 224 1 2410 74 3 0 chr9 33368077 33368375 -84494252 + AluSq SINE Alu 1 299 -14 422 146 106 133 chr9 33369137 33369288 -84493339 + MER69 DNA AcHobo 2380 2526 0 277 305 24 18 chr9 33369827 33369991 -84492636 + L1P LINE L1 2161 2325 -3821 262 275 25 0 chr9 33370264 33370344 -84492283 + (TA)n Simple_repeat Simple_repeat 1 82 0 343 108 31 31 chr9 33370517 33370646 -84491981 + (TA)n Simple_repeat Simple_repeat 2 130 0 723 285 160 45 chr9 33370646 33370904 -84491723 + L1M4 LINE L1 2984 3211 -2935 2101 77 0 22 chr9 33370904 33371176 -84491451 + AluSc SINE Alu 35 300 -9 723 285 160 45 chr9 33371176 33371629 -84490998 + L1M4 LINE L1 3211 3777 -2369 1973 132 24 3 chr9 33372835 33373124 -84489503 + AluSx SINE Alu 5 299 -13 2657 128 163 20 chr9 33373124 33373579 -84489048 + MER1A DNA MER1_type 6 525 -4 1746 161 37 3 chr9 33373643 33373942 -84488685 - AluJb SINE Alu 0 312 4 1150 275 57 82 chr9 33375029 33375541 -84487086 - MER45C DNA AcHobo -439 514 16 379 273 125 31 chr9 33375583 33375711 -84486916 + MIR3 SINE MIR 12 151 -57 587 252 145 6 chr9 33375798 33375957 -84486670 + MER5A DNA MER1_type 9 189 0 180 0 0 0 chr9 33377093 33377113 -84485514 + (TC)n Simple_repeat Simple_repeat 2 21 0 755 316 68 28 chr9 33377284 33377534 -84485093 + MER115 DNA AcHobo 61 320 -373 459 210 84 42 chr9 33377736 33377912 -84484715 + MIR SINE MIR 8 193 -63 440 35 17 0 chr9 33377955 33378013 -84484614 + (TCTA)n Simple_repeat Simple_repeat 3 61 0 2279 193 19 14 chr9 33378573 33378998 -84483629 + MER6A DNA MER2_type 1 427 -178 497 115 11 11 chr9 33378999 33379086 -84483541 + L1MA4 LINE L1 6209 6295 -5 1173 123 11 0 chr9 33379137 33379316 -84483311 + MER6A DNA MER2_type 425 605 0 402 252 50 8 chr9 33379484 33379603 -84483024 + MLT2E LTR ERVL 1 124 -504 484 316 79 55 chr9 33381348 33381728 -84480899 - L2 LINE L2 -2 3311 2923 224 375 45 11 chr9 33381784 33381960 -84480667 - L2 LINE L2 -489 2825 2644 1192 53 0 7 chr9 33382840 33382992 -84479635 - L1PA7 LINE L1 -2 6152 6002 198 217 0 0 chr9 33383553 33383622 -84479005 + (TA)n Simple_repeat Simple_repeat 2 70 0 247 239 68 94 chr9 33383897 33384014 -84478613 - L2 LINE L2 -18 3295 3182 1957 148 0 3 chr9 33384106 33384396 -84478231 + AluJb SINE Alu 1 289 -23 530 216 58 47 chr9 33384548 33384738 -84477889 - Charlie1 DNA MER1_type 0 2761 2570 43643 42 1 6 chr9 33384796 33390968 -84471659 - L1PA3 LINE L1 -4 6151 9 4234 215 34 20 chr9 33390976 33392033 -84470594 - Charlie1 DNA MER1_type -214 2547 1476 1083 270 44 100 chr9 33392153 33392416 -84470211 - L1MDa LINE L1 -4341 2380 2104 263 28 28 0 chr9 33392416 33392452 -84470175 + (TTTG)n Simple_repeat Simple_repeat 3 39 0 1083 270 44 100 chr9 33392452 33392837 -84469790 - L1MDa LINE L1 -4617 2104 1699 2000 117 71 31 chr9 33392837 33393187 -84469440 + THE1B LTR MaLR 1 364 0 11613 94 8 2 chr9 33393187 33394758 -84467869 + THE1B-int LTR MaLR 1 1580 0 2181 132 48 25 chr9 33394758 33395114 -84467513 + THE1B LTR MaLR 1 364 0 1083 270 44 100 chr9 33395114 33395542 -84467085 - L1MDa LINE L1 -5019 1702 1298 1894 146 7 0 chr9 33395551 33395861 -84466766 - AluSp SINE Alu 0 312 1 35 24 0 0 chr9 33395909 33395951 -84466676 + AT_rich Low_complexity Low_complexity 1 42 0 2328 191 39 15 chr9 33396700 33397167 -84465460 + Tigger6a DNA MER2_type 1 478 -605 1228 163 21 8 chr9 33397168 33397258 -84465369 - L1M3 LINE L1 -583 5585 5498 1667 170 125 47 chr9 33397258 33397659 -84464968 + MSTB1 LTR MaLR 1 432 0 1228 163 21 8 chr9 33397659 33397807 -84464820 - L1M3 LINE L1 -670 5498 5344 2620 155 34 0 chr9 33397807 33398269 -84464358 + L1MA10 LINE L1 5851 6331 -3 1460 186 15 82 chr9 33398326 33398729 -84463898 + Tigger6a DNA MER2_type 707 1082 -1 551 321 128 45 chr9 33398868 33399335 -84463292 + L2 LINE L2 2805 3310 -3 290 361 90 22 chr9 33399530 33399940 -84462687 + L2 LINE L2 2176 2613 -701 6999 37 10 6 chr9 33400253 33401120 -84461507 - L1PA5 LINE L1 0 6154 5284 1211 225 25 57 chr9 33401124 33401741 -84460886 + L1M3c LINE L1 1294 1930 -4280 2040 151 0 0 chr9 33401741 33402045 -84460582 + AluSx SINE Alu 1 304 -8 1211 225 25 57 chr9 33402045 33402187 -84460440 + L1M3c LINE L1 1930 5208 -1002 2431 159 28 14 chr9 33402188 33402610 -84460017 - MSTA LTR MaLR 0 428 1 7492 171 45 4 chr9 33402610 33403915 -84458712 - MSTA-int LTR MaLR 0 1651 293 5100 151 31 5 chr9 33403934 33404897 -84457730 + L1PA16 LINE L1 5236 6221 -9 1731 246 59 68 chr9 33404904 33405299 -84457328 + L1MA9 LINE L1 2702 3099 -4466 2112 123 10 0 chr9 33405299 33405592 -84457035 - AluSp SINE Alu -15 298 3 1731 246 59 68 chr9 33405592 33406012 -84456615 + L1MA9 LINE L1 3099 3509 -4056 2323 84 3 0 chr9 33406012 33406309 -84456318 - AluY SINE Alu -13 298 1 1731 246 59 68 chr9 33406309 33406473 -84456154 + L1MA9 LINE L1 3509 3673 -3892 * 2126 203 73 17 chr9 33406465 33407065 -84455562 + L1MA9 LINE L1 4065 4698 -2867 6167 202 30 21 chr9 33407094 33409641 -84452986 + L1MA9 LINE L1 5124 7695 -36 378 145 68 33 chr9 33409626 33409755 -84452872 + L1P4 LINE L1 5300 5444 -721 * 1066 214 43 117 chr9 33409751 33410641 -84451986 + L1MCa LINE L1 985 1891 -4535 3721 174 73 11 chr9 33410677 33411033 -84451594 + L1MA9 LINE L1 5422 5755 -557 225 0 0 0 chr9 33411033 33411058 -84451569 + (TA)n Simple_repeat Simple_repeat 1 25 0 3721 174 73 11 chr9 33411058 33411484 -84451143 + L1MA9 LINE L1 5755 6252 -60 18827 173 28 8 chr9 33411493 33418923 -84443704 + L1PA11 LINE L1 5 7610 -2 198 0 0 0 chr9 33418948 33418970 -84443657 + (GAAA)n Simple_repeat Simple_repeat 2 23 0 5631 106 50 5 chr9 33418970 33419261 -84443366 + L1PA14 LINE L1 4067 4343 -1818 5631 99 56 0 chr9 33419261 33420957 -84441670 + L1PA14 LINE L1 4410 6152 -9 5631 106 50 5 chr9 33420957 33420992 -84441635 + L1PA14 LINE L1 4343 6152 -9 336 167 14 0 chr9 33420983 33421055 -84441572 + L1MA9 LINE L1 6240 6312 0 * 307 346 60 37 chr9 33421074 33421291 -84441336 + L2 LINE L2 3048 3269 -3 320 309 8 16 chr9 33421886 33422009 -84440618 - MIR SINE MIR -24 238 117 24 91 0 0 chr9 33422303 33422369 -84440258 + AT_rich Low_complexity Low_complexity 1 66 0 245 318 119 29 chr9 33422376 33422687 -84439940 + L2 LINE L2 1700 2038 -1276 22 70 0 0 chr9 33423571 33423614 -84439013 + AT_rich Low_complexity Low_complexity 1 43 0 1106 38 0 0 chr9 33423614 33423746 -84438881 - L1PA3 LINE L1 -3 6152 6021 1748 137 28 4 chr9 33423760 33424015 -84438612 + AluSx SINE Alu 1 261 -51 227 100 0 25 chr9 33424018 33424058 -84438569 + (TAA)n Simple_repeat Simple_repeat 2 40 0 1208 222 34 66 chr9 33424707 33425085 -84437542 + MLT1A2 LTR MaLR 1 366 -8 1782 168 0 14 chr9 33426784 33427064 -84435563 + AluJb SINE Alu 14 289 -23 237 316 0 0 chr9 33427543 33427600 -84435027 - L2 LINE L2 -10 3262 3206 219 218 0 0 chr9 33427923 33427978 -84434649 + (TA)n Simple_repeat Simple_repeat 2 56 0 2047 170 76 34 chr9 33428483 33429007 -84433620 + L1MB7 LINE L1 5628 6173 -11 235 326 184 43 chr9 33429517 33429658 -84432969 - MIR SINE MIR -98 164 4 245 352 69 28 chr9 33430321 33430367 -84432260 + MIR SINE MIR 22 65 -197 2056 166 22 96 chr9 33430367 33430867 -84431760 + MLT2C2 LTR ERVL 2 464 0 245 352 69 28 chr9 33430867 33430965 -84431662 + MIR SINE MIR 65 172 -90 683 264 10 30 chr9 33431069 33431266 -84431361 + Tigger5 DNA MER2_type 118 310 -2013 * 917 157 0 6 chr9 33431265 33431424 -84431203 + Tigger5 DNA MER2_type 2166 2323 0 6501 260 41 44 chr9 33431424 33435103 -84427524 - L1M4 LINE L1 -3809 3358 2 204 175 35 35 chr9 33435323 33435380 -84427247 + (CTTTA)n Simple_repeat Simple_repeat 2 58 0 250 310 0 0 chr9 33435383 33435441 -84427186 - MER2 DNA MER2_type -8 337 280 1107 187 5 0 chr9 33435470 33435679 -84426948 - MER2 DNA MER2_type -135 210 1 665 290 56 39 chr9 33437068 33437299 -84425328 - MIR SINE MIR -19 243 9 22 70 0 0 chr9 33437930 33437973 -84424654 + AT_rich Low_complexity Low_complexity 1 43 0 27 29 0 0 chr9 33438454 33438488 -84424139 + AT_rich Low_complexity Low_complexity 1 34 0 236 207 17 0 chr9 33439037 33439095 -84423532 - MER67D LTR ERV1 -5 509 451 1446 166 57 44 chr9 33439123 33439519 -84423108 - MER67C LTR ERV1 -243 271 1 22 35 0 0 chr9 33439837 33439866 -84422761 + AT_rich Low_complexity Low_complexity 1 29 0 1998 125 50 36 chr9 33440134 33440493 -84422134 - THE1B LTR MaLR 0 364 1 11395 103 7 0 chr9 33440493 33442060 -84420567 - THE1B-int LTR MaLR 0 1580 3 787 171 56 88 chr9 33442066 33442282 -84420345 - THE1B LTR MaLR -4 360 152 21353 112 9 11 chr9 33442293 33445707 -84416920 + L1PA6 LINE L1 12 3419 -2727 836 128 0 0 chr9 33445696 33445829 -84416798 + L1P LINE L1 4790 4922 -1224 * 14356 65 14 0 chr9 33445830 33448576 -84414051 + L1PA6 LINE L1 3416 6148 -6 190 304 0 0 chr9 33448582 33448628 -84413999 - MIR SINE MIR -158 104 59 948 162 30 0 chr9 33448639 33448806 -84413821 - THE1B LTR MaLR -191 173 2 219 189 0 0 chr9 33448864 33448917 -84413710 + A-rich Low_complexity Low_complexity 1 53 0 1324 83 11 0 chr9 33449461 33449641 -84412986 - AluSg/x SINE Alu -2 310 129 1921 122 31 10 chr9 33450153 33450441 -84412186 - AluSg1 SINE Alu -15 294 1 276 188 0 0 chr9 33450537 33450601 -84412026 + CT-rich Low_complexity Low_complexity 1 64 0 207 139 0 0 chr9 33450600 33450636 -84411991 + (CA)n Simple_repeat Simple_repeat 1 36 0 * 3794 61 2 10 chr9 33451210 33451699 -84410928 + L1PA6 LINE L1 5662 6146 -8 7390 32 0 0 chr9 33451953 33453031 -84409596 - L1PA4 LINE L1 -2 6153 5077 330 340 132 37 chr9 33453453 33453833 -84408794 - L2 LINE L2 -451 2863 2448 223 356 77 0 chr9 33453831 33454025 -84408602 - L2 LINE L2 -1777 1537 1329 * 2513 158 6 53 chr9 33454150 33454675 -84407952 + L1MB3 LINE L1 5683 6182 -1 3879 32 4 0 chr9 33455047 33455508 -84407119 - L1PA3 LINE L1 0 6155 5693 1750 13 18 0 chr9 33455508 33455732 -84406895 + L1P LINE L1 4276 4503 -1643 464 350 45 12 chr9 33455919 33456162 -84406465 - MIR SINE MIR -10 252 2 234 0 0 0 chr9 33457786 33457812 -84404815 + (TG)n Simple_repeat Simple_repeat 2 27 0 427 328 72 19 chr9 33457891 33458156 -84404471 - L1ME4a LINE L1 -253 5868 5590 23 33 0 0 chr9 33458383 33458413 -84404214 + AT_rich Low_complexity Low_complexity 1 30 0 247 283 220 25 chr9 33458441 33458600 -84404027 - L2 LINE L2 -86 3227 3038 10233 137 10 33 chr9 33458903 33459034 -84403593 - L1P LINE L1 -1105 5041 4909 192 77 0 0 chr9 33459034 33459060 -84403567 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 10233 137 10 33 chr9 33459060 33459084 -84403543 - L1P LINE L1 -1237 4909 4886 2073 67 8 0 chr9 33459084 33459352 -84403275 - L1PA7 LINE L1 -7 6147 5878 10233 137 10 33 chr9 33459352 33461113 -84401514 - L1P LINE L1 -1260 4886 3168 419 339 93 36 chr9 33462052 33462300 -84400327 + HAL1 LINE L1 2246 2507 0 3023 188 48 75 chr9 33462863 33463955 -84398672 + MER52A LTR ERV1 1 1008 -327 473 221 24 0 chr9 33463959 33464086 -84398541 + L1MA9 LINE L1 5952 6081 -231 475 204 28 0 chr9 33464089 33464197 -84398430 + L1MA9 LINE L1 6181 6291 -21 1865 178 3 13 chr9 33464259 33464574 -84398053 - AluJo SINE Alu 0 312 1 21 0 0 0 chr9 33464660 33464681 -84397946 + AT_rich Low_complexity Low_complexity 1 21 0 1167 161 0 5 chr9 33464736 33464935 -84397692 - Tigger5 DNA MER2_type 0 2323 2126 469 227 0 0 chr9 33464952 33465049 -84397578 - Tigger5 DNA MER2_type -2217 106 10 587 330 107 18 chr9 33465335 33465744 -84396883 - L1ME LINE L1 -385 5736 5297 269 279 26 51 chr9 33465849 33466065 -84396562 - L1ME LINE L1 -638 5507 5296 401 288 76 60 chr9 33466066 33466382 -84396245 - L1ME LINE L1 -1799 4330 4010 264 236 11 22 chr9 33466382 33466471 -84396156 - L1ME LINE L1 -5059 1060 973 1166 60 0 7 chr9 33466486 33467138 -84395489 - AluY SINE Alu -20 291 144 5209 136 23 5 chr9 33466497 33466980 -84395647 - L1PA16 LINE L1 0 6166 5693 2478 60 0 0 chr9 33466980 33467281 -84395346 - AluY SINE Alu -10 301 1 5209 136 23 5 chr9 33467281 33467635 -84394992 - L1PA16 LINE L1 -473 5693 5347 369 0 0 0 chr9 33467635 33467676 -84394951 + (TTA)n Simple_repeat Simple_repeat 2 42 0 5209 136 23 5 chr9 33467676 33468371 -84394256 - L1PA16 LINE L1 -819 5347 4600 3844 207 53 41 chr9 33468371 33469329 -84393298 - MER52A LTR ERV1 0 1755 1 553 229 65 0 chr9 33469329 33469518 -84393109 - L1PA16 LINE L1 -1543 4603 4387 627 238 22 6 chr9 33469525 33469706 -84392921 - L1 LINE L1 -1631 4515 4332 392 348 24 52 chr9 33469733 33470061 -84392566 - L1ME LINE L1 -5357 762 444 27 49 0 0 chr9 33470314 33470355 -84392272 + AT_rich Low_complexity Low_complexity 1 41 0 261 0 0 0 chr9 33470975 33471004 -84391623 + (TG)n Simple_repeat Simple_repeat 2 30 0 5368 114 22 97 chr9 33471030 33471606 -84391021 + Tigger3b DNA MER2_type 3 425 -2604 1918 155 0 10 chr9 33471606 33471909 -84390718 + AluJb SINE Alu 1 300 -12 5368 114 22 97 chr9 33471909 33472660 -84389967 + Tigger3b DNA MER2_type 425 1231 -1 186 133 0 0 chr9 33472660 33472690 -84389937 + (TA)n Simple_repeat Simple_repeat 2 31 0 695 238 61 6 chr9 33473239 33473403 -84389224 - MLT1D LTR MaLR 0 505 333 1728 210 103 19 chr9 33473407 33473941 -84388686 + MLT1D LTR MaLR 1 621 -5 577 186 113 0 chr9 33473973 33474097 -84388530 - MLT1D LTR MaLR -346 159 22 37 39 0 0 chr9 33474700 33474751 -84387876 + AT_rich Low_complexity Low_complexity 1 51 0 613 332 37 8 chr9 33474826 33475067 -84387560 + LTR16A LTR ERVL 203 450 0 443 224 28 0 chr9 33475148 33475255 -84387372 - MIR SINE MIR -22 240 131 6397 141 19 11 chr9 33475435 33475625 -84387002 - L1PB1 LINE L1 0 6151 5964 243 0 0 0 chr9 33475625 33475652 -84386975 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1923 109 11 25 chr9 33475652 33475935 -84386692 - AluSg SINE Alu -31 279 1 6397 141 19 11 chr9 33475935 33477777 -84384850 - L1PB1 LINE L1 -186 5965 4110 1336 219 4 0 chr9 33477877 33478155 -84384472 - L1PB1 LINE L1 -2299 3847 3569 28 0 0 0 chr9 33478221 33478249 -84384378 + AT_rich Low_complexity Low_complexity 1 28 0 227 287 82 20 chr9 33478436 33478631 -84383996 + L1M4 LINE L1 2956 3162 -2984 547 278 42 42 chr9 33478953 33479144 -84383483 + MIR SINE MIR 71 261 -1 1927 272 107 40 chr9 33479646 33480375 -84382252 + MER69B DNA AcHobo 17 794 -432 1856 169 49 3 chr9 33480375 33480700 -84381927 - MER2 DNA MER2_type 0 345 6 1026 205 63 24 chr9 33480712 33481043 -84381584 + MER69B DNA AcHobo 801 1144 -82 504 232 65 0 chr9 33481099 33481237 -84381390 + L1M4 LINE L1 840 986 -5556 297 236 32 32 chr9 33481882 33482005 -84380622 - MER113 DNA MER1_type? -386 135 13 3431 76 0 9 chr9 33482472 33482920 -84379707 - MLT2A1 LTR ERVL 0 444 1 200 290 16 16 chr9 33483228 33483290 -84379337 + MIR3 SINE MIR 133 194 -14 1627 208 0 26 chr9 33484368 33484676 -84377951 - AluJo SINE Alu -12 300 1 245 282 181 13 chr9 33484877 33485026 -84377601 - MIR SINE MIR -3 259 86 2780 123 17 0 chr9 33485206 33485620 -84377007 - MSTA LTR MaLR 0 428 8 409 283 29 43 chr9 33487607 33487745 -84374882 + MER97b DNA MER1_type? 3 138 -915 771 284 139 23 chr9 33487820 33488208 -84374419 + L1ME2 LINE L1 61 493 -5577 404 268 95 48 chr9 33488325 33488493 -84374134 + L1ME2 LINE L1 272 447 -5623 1360 256 54 55 chr9 33488495 33489146 -84373481 + L1ME2 LINE L1 476 1118 -4962 1826 173 3 10 chr9 33489146 33489459 -84373168 + AluJb SINE Alu 1 311 -1 1360 256 54 55 chr9 33489459 33489497 -84373130 + L1ME2 LINE L1 1118 1155 -4925 2347 76 3 0 chr9 33489584 33489886 -84372741 + AluY SINE Alu 1 303 -8 4164 121 13 1 chr9 33489894 33490572 -84372055 - L1P LINE L1 -2804 3342 2657 2227 97 0 6 chr9 33490572 33490891 -84371736 + L1PA8 LINE L1 5849 6166 -6 904 276 35 30 chr9 33490893 33491295 -84371332 + L1ME2 LINE L1 1244 1647 -4614 2005 136 0 13 chr9 33491303 33491605 -84371022 + AluSg SINE Alu 1 298 -12 237 160 40 0 chr9 33491711 33491761 -84370866 + L1MC1 LINE L1 6269 6320 -13 401 187 13 0 chr9 33491790 33491865 -84370762 + AluJb SINE Alu 50 125 -187 270 198 0 0 chr9 33491894 33491965 -84370662 + L1ME2 LINE L1 2060 2170 -3951 4605 84 9 8 chr9 33491975 33492621 -84370006 + L1PA11 LINE L1 5328 5974 -200 289 346 53 30 chr9 33493003 33493136 -84369491 + L2 LINE L2 3136 3271 -1 367 360 90 9 chr9 33494306 33494539 -84368088 + MIR SINE MIR 5 256 -6 226 282 0 12 chr9 33498441 33498526 -84364101 + L1ME2 LINE L1 4437 4520 -1560 181 147 0 29 chr9 33499352 33499386 -84363241 + MER5A DNA MER1_type 128 160 -29 355 237 54 11 chr9 33499449 33499542 -84363085 - L2 LINE L2 -2 3311 3215 355 295 0 27 chr9 33499608 33499720 -84362907 - L2 LINE L2 -280 3033 2925 308 224 0 0 chr9 33499722 33499780 -84362847 + MER5B DNA MER1_type 119 176 -2 1234 118 0 5 chr9 33500342 33500528 -84362099 + L1PB4 LINE L1 5963 6147 -9 1742 134 47 27 chr9 33501412 33501710 -84360917 - AluSx SINE Alu -8 304 1 633 311 39 11 chr9 33501871 33502154 -84360473 + L2 LINE L2 1751 2041 -1273 23295 40 4 3 chr9 33502331 33506015 -84356612 - L1PA4 LINE L1 0 6155 2468 10979 46 1 1 chr9 33506015 33507398 -84355229 + L1PA4 LINE L1 1110 2492 -3654 2554 246 50 18 chr9 33509701 33511064 -84351563 + L1ME2 LINE L1 4618 6023 -75 24 32 0 0 chr9 33511069 33511100 -84351527 + AT_rich Low_complexity Low_complexity 1 31 0 244 231 154 29 chr9 33511111 33511215 -84351412 + L1MC5 LINE L1 7799 7915 -46 2547 33 3 0 chr9 33512922 33513225 -84349402 - AluY SINE Alu -7 304 1 325 59 20 0 chr9 33513227 33513278 -84349349 - L1PB3 LINE L1 0 6154 6103 5714 105 22 46 chr9 33513946 33514802 -84347825 - L1PB3 LINE L1 0 6154 5317 1978 147 10 0 chr9 33514802 33515095 -84347532 - AluSx SINE Alu -16 296 1 5714 105 22 46 chr9 33515095 33515223 -84347404 - L1PB3 LINE L1 -837 5317 5187 8463 184 45 29 chr9 33515223 33517274 -84345353 + L1PB3 LINE L1 3102 5185 -961 25 0 0 0 chr9 33517450 33517475 -84345152 + AT_rich Low_complexity Low_complexity 1 25 0 363 251 57 80 chr9 33518365 33518540 -84344087 - HAL1 LINE L1 -597 1910 1740 1181 261 51 39 chr9 33518577 33518962 -84343665 + MLT1D LTR MaLR 127 505 0 996 229 46 23 chr9 33518963 33519269 -84343358 + MLT1D-int LTR MaLR 2 314 -1057 1181 203 54 0 chr9 33519477 33519738 -84342889 + MLT1D-int LTR MaLR 332 606 -765 666 258 41 5 chr9 33519873 33520067 -84342560 + MLT1D-int LTR MaLR 664 864 -507 447 186 10 21 chr9 33520210 33520307 -84342320 - L1MC5 LINE L1 -734 7227 7132 1991 144 0 0 chr9 33520340 33520625 -84342002 + AluSx SINE Alu 1 285 -27 605 255 91 12 chr9 33520635 33520878 -84341749 - LTR37B LTR ERV1 -8 460 199 1761 181 0 0 chr9 33521004 33521297 -84341330 - AluJb SINE Alu -19 293 1 520 290 100 24 chr9 33521931 33522273 -84340354 + LTR1 LTR ERV1 28 386 -440 391 195 110 17 chr9 33522430 33522548 -84340079 + LTR28 LTR ERV1 446 574 -446 292 211 58 153 chr9 33522560 33522750 -84339877 + LTR28 LTR ERV1 848 1019 -1 1106 282 272 10 chr9 33523171 33523675 -84338952 + L2 LINE L2 2001 2636 -678 442 228 73 16 chr9 33523687 33523810 -84338817 - LTR33 LTR ERVL -14 507 378 475 288 88 54 chr9 33523849 33524089 -84338538 - LTR33 LTR ERVL -237 284 37 769 296 112 41 chr9 33524091 33524754 -84337873 + L2 LINE L2 2619 3312 -1 249 83 0 0 chr9 33526087 33526123 -84336504 + (CA)n Simple_repeat Simple_repeat 1 36 0 2253 95 46 62 chr9 33527433 33527651 -84334976 - THE1B LTR MaLR -2 362 150 2125 124 0 0 chr9 33527651 33527963 -84334664 + AluSc SINE Alu 1 312 0 2253 95 46 62 chr9 33527963 33528111 -84334516 - THE1B LTR MaLR -214 150 1 2084 166 8 21 chr9 33528153 33528533 -84334094 + THE1C LTR MaLR 1 375 0 321 292 79 54 chr9 33528988 33529493 -84333134 - L1ME3A LINE L1 -218 5952 5428 29 28 0 0 chr9 33529550 33529586 -84333041 + AT_rich Low_complexity Low_complexity 1 36 0 389 356 60 20 chr9 33529654 33529904 -84332723 - HAL1 LINE L1 -833 1674 1415 649 281 33 53 chr9 33530117 33530136 -84332491 - HAL1 LINE L1 0 2507 2489 1524 124 4 26 chr9 33530136 33530369 -84332258 + AluJo SINE Alu 85 312 0 649 281 33 53 chr9 33530369 33530648 -84331979 - HAL1 LINE L1 -18 2489 2215 265 250 158 50 chr9 33530662 33530678 -84331949 + MLT1E1 LTR MaLR 1 14 -579 2029 160 30 28 chr9 33530678 33531040 -84331587 + THE1B LTR MaLR 1 363 -1 265 250 158 50 chr9 33531040 33531143 -84331484 + MLT1E1 LTR MaLR 14 133 -460 * 1153 235 28 7 chr9 33531139 33531546 -84331081 + MLT1E1 LTR MaLR 102 653 -1 1021 266 166 14 chr9 33531715 33532215 -84330412 - HAL1 LINE L1 -544 1963 1388 22 56 0 0 chr9 33532284 33532320 -84330307 + AT_rich Low_complexity Low_complexity 1 36 0 211 242 0 65 chr9 33533424 33533486 -84329141 - MIR3 SINE MIR -49 159 102 1048 228 22 14 chr9 33533487 33533904 -84328723 + MER31A LTR ERV1 1 476 -9 248 299 232 31 chr9 33534904 33535098 -84327529 - L3b LINE CR1 -146 1437 1205 1878 247 116 14 chr9 33535194 33535728 -84326899 + MLT1G LTR MaLR 22 571 -19 204 118 29 0 chr9 33535772 33535806 -84326821 + (CTTG)n Simple_repeat Simple_repeat 1 35 0 22 56 0 0 chr9 33536225 33536261 -84326366 + AT_rich Low_complexity Low_complexity 1 36 0 31 0 0 0 chr9 33537018 33537049 -84325578 + AT_rich Low_complexity Low_complexity 1 31 0 1595 169 35 17 chr9 33537404 33537694 -84324933 - AluJb SINE Alu -17 295 1 23 68 0 0 chr9 33537938 33537982 -84324645 + AT_rich Low_complexity Low_complexity 1 44 0 308 259 87 43 chr9 33538473 33538658 -84323969 + L1M4 LINE L1 5140 5332 -814 23 0 0 0 chr9 33538941 33538964 -84323663 + AT_rich Low_complexity Low_complexity 1 23 0 1506 22 38 0 chr9 33539066 33539249 -84323378 + L1PA2 LINE L1 5965 6154 -1 21 36 0 0 chr9 33539250 33539278 -84323349 + AT_rich Low_complexity Low_complexity 1 28 0 404 300 40 0 chr9 33539449 33539599 -84323028 + HAL1b LINE L1 756 911 -437 4557 67 40 2 chr9 33539827 33540455 -84322172 + L1PA10 LINE L1 5516 6167 -1 509 178 85 23 chr9 33540461 33540590 -84322037 + LTR48B LTR ERV1 426 562 -82 415 316 172 21 chr9 33540919 33541204 -84321423 - L2 LINE L2 -4 3309 2982 2294 157 46 2 chr9 33542565 33542980 -84319647 + Tigger3b DNA MER2_type 1 433 -798 893 264 94 41 chr9 33543727 33544090 -84318537 + MLT1J LTR MaLR 89 470 -41 2282 94 0 49 chr9 33545170 33545499 -84317128 - AluSq SINE Alu 0 313 1 249 303 26 13 chr9 33546726 33546802 -84315825 + L2 LINE L2 3163 3239 -33 4401 169 20 57 chr9 33546852 33548432 -84314195 - L1MA9 LINE L1 -1 6311 4793 524 251 21 5 chr9 33548453 33548644 -84313983 - L1MA9 LINE L1 -2953 3193 3000 1748 209 27 84 chr9 33549629 33550118 -84312509 + MLT2B1 LTR ERVL 1 461 -59 345 93 0 0 chr9 33550118 33550172 -84312455 + (GA)n Simple_repeat Simple_repeat 1 54 0 231 36 0 0 chr9 33550172 33550200 -84312427 + (TG)n Simple_repeat Simple_repeat 2 29 0 230 171 0 0 chr9 33550203 33550244 -84312383 + MLT2D LTR ERVL 374 414 0 740 155 0 0 chr9 33550852 33550968 -84311659 + FLAM_C SINE Alu 3 118 -15 38233 87 13 9 chr9 33550986 33556655 -84305972 + L1P2 LINE L1 1 5691 -463 241 242 174 30 chr9 33556667 33556799 -84305828 + L1ME LINE L1 5589 5739 -425 522 245 86 7 chr9 33557073 33557224 -84305403 + MIR SINE MIR 97 259 -3 511 299 72 6 chr9 33558218 33558385 -84304242 - MER5B DNA MER1_type 0 178 1 509 314 48 23 chr9 33559004 33559423 -84303204 + HAL1b LINE L1 285 589 -759 225 0 0 0 chr9 33559661 33559686 -84302941 + (TC)n Simple_repeat Simple_repeat 2 26 0 216 0 0 0 chr9 33559685 33559709 -84302918 + (TA)n Simple_repeat Simple_repeat 1 24 0 * 429 186 0 0 chr9 33559780 33559909 -84302718 + (TA)n Simple_repeat Simple_repeat 1 129 0 478 298 27 5 chr9 33560767 33560955 -84301672 + L1ME LINE L1 5627 5818 -303 1736 167 58 14 chr9 33561464 33561823 -84300804 - THE1C LTR MaLR 0 375 1 2742 154 29 0 chr9 33563257 33563781 -84298846 + L1MC/D LINE L1 5184 5722 -611 1036 275 175 10 chr9 33563781 33564199 -84298428 - MLT1H LTR MaLR -35 514 28 978 207 88 128 chr9 33564647 33565068 -84297559 + MLT1C LTR MaLR 95 460 -7 29 0 0 0 chr9 33565349 33565378 -84297249 + AT_rich Low_complexity Low_complexity 1 29 0 221 217 0 14 chr9 33565973 33566042 -84296585 + (CATATA)n Simple_repeat Simple_repeat 2 69 0 582 240 31 158 chr9 33566541 33567054 -84295573 + L1ME3 LINE L1 5491 5938 -224 899 120 0 125 chr9 33567280 33567464 -84295163 - MER1B DNA MER1_type 0 339 179 379 197 0 0 chr9 33567478 33567539 -84295088 - MER1B DNA MER1_type -276 61 1 3990 125 24 0 chr9 33569220 33569838 -84292789 - MER41B LTR ERV1 0 635 3 701 224 7 0 chr9 33570603 33570750 -84291877 - MER58A DNA MER1_type -34 190 43 353 282 17 34 chr9 33571122 33571239 -84291388 + MIR SINE MIR 117 231 -31 463 306 69 26 chr9 33571247 33571479 -84291148 - MIR SINE MIR -2 260 19 387 193 50 107 chr9 33572149 33572289 -84290338 + MIR SINE MIR 118 249 -13 401 227 0 11 chr9 33572610 33572698 -84289929 + MER94 DNA DNA 1 87 -47 265 236 182 45 chr9 33573194 33573304 -84289323 - L2 LINE L2 -1 3312 3188 519 348 150 9 chr9 33574431 33575060 -84287567 - L2 LINE L2 0 3272 2550 1911 102 4 15 chr9 33575769 33576034 -84286593 + AluSx SINE Alu 32 293 -19 247 383 19 32 chr9 33576541 33576695 -84285932 - MIR3 SINE MIR -24 184 33 3532 159 52 4 chr9 33577206 33577893 -84284734 + L1P3 LINE L1 2 721 -5154 1933 243 66 31 chr9 33578265 33579043 -84283584 - L1ME3A LINE L1 -74 6096 5275 9310 35 1 0 chr9 33579143 33580351 -84282276 - L1P LINE L1 -2503 3643 2435 13398 28 4 8 chr9 33580451 33582492 -84280135 + L1P1 LINE L1 3695 5721 -434 1737 141 10 10 chr9 33582620 33582926 -84279701 + AluY SINE Alu 2 307 -4 912 271 60 64 chr9 33582993 33584003 -84278624 + L1MEc LINE L1 2023 3003 -3212 589 160 134 8 chr9 33584024 33584143 -84278484 - AluJo SINE Alu -178 134 1 670 288 68 21 chr9 33584426 33584763 -84277864 - L1ME3A LINE L1 -1119 5027 4675 3045 55 0 0 chr9 33584811 33585213 -84277414 - L1PA5 LINE L1 -1222 4924 4523 7145 39 23 0 chr9 33585219 33586411 -84276216 + L1PA5 LINE L1 4939 6150 -4 486 277 65 19 chr9 33586424 33586579 -84276048 + FRAM SINE Alu 1 155 -21 293 260 39 0 chr9 33586581 33586658 -84275969 + L1MEc LINE L1 4086 4165 -2050 1775 15 0 0 chr9 33586794 33586991 -84275636 + AluYa5 SINE Alu 115 311 0 14809 155 8 18 chr9 33587089 33589983 -84272644 - L1P LINE L1 -1597 4549 1684 300 111 22 0 chr9 33590194 33590239 -84272388 + HERVL LTR ERVL 1326 1371 -4283 603 131 17 0 chr9 33590241 33590358 -84272269 + MLT2A2 LTR ERVL 359 453 0 2187 134 14 6 chr9 33591097 33591448 -84271179 - L1PA16 LINE L1 -3 6163 5810 4990 51 5 8 chr9 33591448 33592095 -84270532 + LTR13 LTR ERVK 3 647 -360 13323 58 74 4 chr9 33592100 33594007 -84268620 + L1P LINE L1 1 2041 -4105 1640 121 72 0 chr9 33594134 33594398 -84268229 - AluSq SINE Alu -30 283 1 4191 221 7 5 chr9 33594398 33595447 -84267180 - L1 LINE L1 -789 5357 4307 1463 205 8 31 chr9 33595446 33595802 -84266825 + L1 LINE L1 3955 4302 -1844 * 428 296 147 35 chr9 33596314 33596682 -84265945 + MLT1I LTR MaLR 1 409 0 187 293 71 91 chr9 33597961 33598060 -84264567 + MIR SINE MIR 39 135 -73 2670 86 103 2 chr9 33598090 33598497 -84264130 - LTR7 LTR ERV1 -2 448 1 2228 106 45 13 chr9 33598497 33598875 -84263752 - HERVH LTR ERV1 0 7713 7324 1251 154 0 5 chr9 33598875 33599096 -84263531 - HERVH LTR ERV1 -1894 5819 5600 4203 135 1 0 chr9 33599097 33599758 -84262869 - HERVH LTR ERV1 -2564 5149 4488 1328 108 5 0 chr9 33599760 33599964 -84262663 - HERVH LTR ERV1 -3720 3993 3789 6880 90 21 5 chr9 33600064 33601056 -84261571 - HERVL LTR ERVL -4636 1018 11 2747 206 23 37 chr9 33601056 33601597 -84261030 - LTR9B LTR ERV1 0 644 111 4526 58 7 0 chr9 33601597 33602193 -84260434 + L1PA6 LINE L1 5565 6164 0 2747 206 23 37 chr9 33602193 33602297 -84260330 - LTR9B LTR ERV1 -533 111 7 1859 157 62 37 chr9 33602317 33602858 -84259769 - MLT2A2 LTR ERVL 0 554 1 59 15 0 0 chr9 33602994 33603060 -84259567 + AT_rich Low_complexity Low_complexity 1 66 0 187 324 54 0 chr9 33605188 33605262 -84257365 - MIR SINE MIR -65 143 66 929 291 65 54 chr9 33606310 33606739 -84255888 + L2 LINE L2 2862 3295 -18 2994 182 7 0 chr9 33607057 33607650 -84254977 - L1 LINE L1 -1072 5074 4478 500 240 78 37 chr9 33607873 33608115 -84254512 - MLT1J LTR MaLR -52 459 208 191 343 14 14 chr9 33608325 33608395 -84254232 + L2 LINE L2 3238 3307 -6 222 118 0 0 chr9 33611237 33611271 -84251356 + (T)n Simple_repeat Simple_repeat 1 34 0 478 281 61 54 chr9 33612261 33612539 -84250088 + L2 LINE L2 2349 2628 -686 238 180 80 10 chr9 33613678 33613778 -84248849 + (ATATG)n Simple_repeat Simple_repeat 4 110 0 * 335 191 22 49 chr9 33613746 33613929 -84248698 + (TA)n Simple_repeat Simple_repeat 2 179 0 382 344 48 4 chr9 33614091 33614397 -84248230 + L1MEd LINE L1 1148 1556 -934 2168 125 33 31 chr9 33614453 33614813 -84247814 + THE1B LTR MaLR 1 361 -3 480 288 62 87 chr9 33614955 33615063 -84247564 - L2 LINE L2 -462 2852 2743 204 97 0 0 chr9 33615063 33615094 -84247533 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 480 288 62 87 chr9 33615094 33615294 -84247333 - L2 LINE L2 -571 2743 2552 339 368 15 0 chr9 33615918 33616051 -84246576 - L2 LINE L2 -638 2676 2542 206 381 44 60 chr9 33616170 33616535 -84246092 - L2 LINE L2 -2036 1278 920 11780 93 32 27 chr9 33618123 33620463 -84242164 + HERVH LTR ERV1 633 2987 -4726 790 107 143 0 chr9 33620457 33620597 -84242030 + HERVH LTR ERV1 3140 3299 -4414 * 269 375 35 28 chr9 33620705 33620849 -84241778 + L2 LINE L2 2652 2796 -518 230 282 39 26 chr9 33620848 33620926 -84241701 - L2 LINE L2 -5 3308 3230 * 234 204 19 0 chr9 33621911 33621965 -84240662 + (CATAT)n Simple_repeat Simple_repeat 4 58 0 350 215 10 149 chr9 33622951 33623146 -84239481 - L2 LINE L2 -141 3172 3005 4461 164 28 32 chr9 33623710 33624616 -84238011 + MER49 LTR ERV1 1 902 -21 291 218 58 11 chr9 33625253 33625340 -84237287 + LTR16A LTR ERVL 274 364 -86 640 331 54 15 chr9 33625468 33625800 -84236827 + HERV16 LTR ERVL 1876 2220 -2776 428 254 18 0 chr9 33625914 33626024 -84236603 + MER63 DNA MER1_type 677 788 -273 1557 120 5 5 chr9 33726531 33726748 -84135879 - AluSx SINE Alu -95 217 1 224 316 114 19 chr9 33727086 33727244 -84135383 + L2 LINE L2 3132 3304 -9 196 252 71 123 chr9 33727779 33727934 -84134693 - MIR SINE MIR -51 211 65 399 344 109 5 chr9 33728876 33729097 -84133530 + MIR SINE MIR 8 251 -11 7304 70 157 4 chr9 33729380 33730440 -84132187 + MER11B LTR ERVK 1 1222 -14 2217 123 0 0 chr9 33731841 33732149 -84130478 + AluSx SINE Alu 1 308 -4 958 267 208 16 chr9 33733064 33733504 -84129123 + L2 LINE L2 2791 3313 0 292 283 53 18 chr9 33733500 33733613 -84129014 - MIR3 SINE MIR -8 200 84 * 1621 183 0 0 chr9 33735256 33735530 -84127097 - AluJo SINE Alu -30 282 9 259 264 23 23 chr9 33735936 33736023 -84126604 + L1P LINE L1 5339 5425 -729 21 36 0 0 chr9 33736431 33736459 -84126168 + AT_rich Low_complexity Low_complexity 1 28 0 334 256 250 51 chr9 33736817 33736973 -84125654 + MER5A DNA MER1_type 3 189 0 757 252 65 55 chr9 33737077 33737387 -84125240 - MER102b DNA MER1_type -2 339 27 520 292 23 14 chr9 33738445 33738665 -84123962 - MIR SINE MIR -32 230 5 216 200 0 0 chr9 33739553 33739598 -84123029 + A-rich Low_complexity Low_complexity 4 48 0 344 303 10 0 chr9 33740254 33740353 -84122274 + L1MC4a LINE L1 5462 5561 -2247 4635 136 51 3 chr9 33740359 33741100 -84121527 + L1MA8 LINE L1 5511 6287 -4 845 246 159 30 chr9 33741141 33741544 -84121083 + LTR50 LTR ERVL 9 463 -332 3743 145 11 16 chr9 33741563 33741894 -84120733 + L1PB1 LINE L1 4808 5139 -1012 2151 121 0 10 chr9 33741894 33742199 -84120428 + AluSx SINE Alu 1 302 -10 3743 145 11 16 chr9 33742199 33742731 -84119896 + L1PB1 LINE L1 5139 5664 -487 2158 113 0 20 chr9 33742731 33743031 -84119596 + AluSq SINE Alu 5 298 -15 3743 145 11 16 chr9 33743031 33743159 -84119468 + L1PB1 LINE L1 5664 5791 -360 203 167 0 0 chr9 33743159 33743201 -84119426 + (CATATA)n Simple_repeat Simple_repeat 5 46 0 2841 90 5 3 chr9 33743201 33743569 -84119058 + L1PB1 LINE L1 5782 6150 -1 462 191 161 9 chr9 33743645 33743817 -84118810 + L1MC4a LINE L1 5568 5775 -403 436 229 84 0 chr9 33743832 33743963 -84118664 + L1MC4a LINE L1 5830 5971 -1837 318 275 60 39 chr9 33744031 33744213 -84118414 + L1MC4a LINE L1 6079 6264 -1544 832 194 50 6 chr9 33744249 33744429 -84118198 + AluSx SINE Alu 4 191 -121 320 0 25 0 chr9 33744559 33744599 -84118028 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 850 285 4 48 chr9 33744758 33745028 -84117599 - MIR SINE MIR 0 262 5 509 241 13 102 chr9 33745031 33745267 -84117360 + MER58C DNA MER1_type 1 215 0 2503 167 19 14 chr9 33745293 33745719 -84116908 + MSTA LTR MaLR 1 428 0 301 236 128 68 chr9 33746465 33746613 -84116014 + L1MC5 LINE L1 7730 7886 -75 31 0 0 0 chr9 33746670 33746701 -84115926 + AT_rich Low_complexity Low_complexity 1 31 0 1297 194 58 20 chr9 33746859 33747153 -84115474 - LTR40c LTR ERVL 0 465 161 301 200 7 89 chr9 33747173 33747308 -84115319 - L1MC5 LINE L1 -94 7867 7744 604 197 24 16 chr9 33747311 33747438 -84115189 - LTR40c LTR ERVL -330 135 8 1761 238 29 13 chr9 33747447 33747830 -84114797 - HERVL40 LTR ERVL -2 5528 5140 888 204 82 15 chr9 33748087 33748283 -84114344 + MER63A DNA MER1_type 2 210 0 244 219 78 16 chr9 33748307 33748371 -84114256 - MIR3 SINE MIR -51 157 90 327 309 32 40 chr9 33748673 33748799 -84113828 + L2 LINE L2 3188 3312 -1 2307 161 105 8 chr9 33749730 33750207 -84112420 + Charlie1b DNA MER1_type 1 523 0 21 0 0 0 chr9 33750956 33750977 -84111650 + GC_rich Low_complexity Low_complexity 1 21 0 933 134 70 6 chr9 33752846 33753017 -84109610 - THE1C LTR MaLR 0 375 194 233 161 161 0 chr9 33753369 33753425 -84109202 - THE1C LTR MaLR -319 109 45 3827 134 28 46 chr9 33755342 33755689 -84106938 + LTR26 LTR ERV1 1 334 -269 2279 64 58 3 chr9 33755689 33755984 -84106643 - AluY SINE Alu 0 311 1 3827 134 28 46 chr9 33755984 33756248 -84106379 + LTR26 LTR ERV1 334 601 -2 5065 58 6 2 chr9 33756352 33756993 -84105634 + L1P3 LINE L1 3460 4103 -2043 4234 41 6 8 chr9 33756990 33757503 -84105124 + L1P3 LINE L1 5309 5820 -334 * 4068 266 62 46 chr9 33757724 33758990 -84103637 - HERVL40 LTR ERVL -1582 3948 2663 824 138 27 138 chr9 33759353 33759506 -84103121 - MER20 DNA MER1_type -19 200 78 2181 98 0 53 chr9 33759506 33759824 -84102803 + AluSq SINE Alu 1 301 -12 824 138 27 138 chr9 33759824 33759895 -84102732 - MER20 DNA MER1_type -141 78 1 678 256 73 27 chr9 33760075 33760433 -84102194 - HERVL40 LTR ERVL -4136 1394 958 252 295 135 13 chr9 33760494 33760650 -84101977 - HERVL40 LTR ERVL -5252 278 104 1184 214 40 11 chr9 33760717 33760992 -84101635 - LTR40c LTR ERVL 0 465 183 573 257 116 69 chr9 33760996 33761402 -84101225 + L1MEc LINE L1 1126 1560 -4836 1512 170 20 37 chr9 33761402 33761696 -84100931 - AluJb SINE Alu -23 289 1 573 257 116 69 chr9 33761696 33761780 -84100847 + L1MEc LINE L1 1560 1639 -4757 1646 191 0 4 chr9 33761783 33762056 -84100571 + AluJb SINE Alu 1 272 -40 1190 184 27 12 chr9 33762059 33762315 -84100312 + AluSq SINE Alu 30 289 -24 1706 211 30 49 chr9 33762439 33762800 -84099827 - L1M4 LINE L1 -1198 4948 4597 2071 137 3 0 chr9 33762800 33763093 -84099534 + AluSx SINE Alu 1 294 -18 1706 211 30 49 chr9 33763093 33763200 -84099427 - L1M4 LINE L1 -1549 4597 4489 1525 202 165 40 chr9 33763201 33763703 -84098924 - MLT1F1 LTR MaLR -1 566 6 460 195 62 0 chr9 33763706 33763819 -84098808 - L1M4 LINE L1 -1650 4496 4377 1095 169 0 6 chr9 33763827 33763999 -84098628 - AluJb SINE Alu -8 304 134 2029 143 0 7 chr9 33763999 33764306 -84098321 - AluSx SINE Alu -7 305 1 277 102 20 20 chr9 33764321 33764370 -84098257 - MLT2E LTR ERVL -2 626 578 270 0 0 0 chr9 33764633 33764663 -84097964 + (TG)n Simple_repeat Simple_repeat 2 31 0 2071 116 0 0 chr9 33764665 33764942 -84097685 - AluSx SINE Alu -35 277 1 1972 181 32 83 chr9 33765665 33766157 -84096470 + MLT1C LTR MaLR 1 467 0 2701 202 34 3 chr9 33766157 33766740 -84095887 + L1MB7 LINE L1 5463 6063 -121 646 141 66 8 chr9 33767204 33767325 -84095302 - LOR1b-int LTR ERV1 -3800 4320 4193 2260 87 20 0 chr9 33767326 33767625 -84095002 - AluSx SINE Alu -7 305 1 11517 106 23 22 chr9 33767684 33769478 -84093149 - LOR1b-int LTR ERV1 -3928 4192 2397 1344 133 0 0 chr9 33769478 33769659 -84092968 + AluSx SINE Alu 1 181 -131 6734 154 84 60 chr9 33769664 33772062 -84090565 - LOR1b-int LTR ERV1 -5731 2389 32 2405 157 84 5 chr9 33772067 33772494 -84090133 - LOR1b LTR ERV1 0 461 1 247 294 151 84 chr9 33772507 33772878 -84089749 - L2 LINE L2 -1142 2172 1777 695 110 10 0 chr9 33773153 33773253 -84089374 - AluSg SINE Alu -13 296 196 870 105 0 0 chr9 33773254 33773368 -84089259 - AluSg SINE Alu -196 114 1 23 0 0 0 chr9 33773698 33773721 -84088906 + AT_rich Low_complexity Low_complexity 1 23 0 30402 103 13 56 chr9 33773751 33780182 -84082445 - L1PA7 LINE L1 0 6154 12 24 0 0 0 chr9 33780228 33780252 -84082375 + AT_rich Low_complexity Low_complexity 1 24 0 784 263 0 11 chr9 33780657 33780847 -84081780 + AluJo SINE Alu 118 305 -7 365 231 98 10 chr9 33781244 33781368 -84081259 + MIR SINE MIR 50 188 -63 240 111 0 0 chr9 33782223 33782268 -84080359 + (ATTG)n Simple_repeat Simple_repeat 4 48 0 2152 107 0 4 chr9 33782268 33782549 -84080078 - AluSx SINE Alu -32 280 1 331 305 59 27 chr9 33782897 33783084 -84079543 + L1M4 LINE L1 4415 4607 -1539 33 25 0 0 chr9 33783392 33783432 -84079195 + AT_rich Low_complexity Low_complexity 1 40 0 452 102 72 6 chr9 33783432 33783598 -84079029 + (TA)n Simple_repeat Simple_repeat 1 177 0 26 0 0 0 chr9 33783604 33783630 -84078997 + AT_rich Low_complexity Low_complexity 1 26 0 390 159 80 6 chr9 33783634 33783797 -84078830 + (TA)n Simple_repeat Simple_repeat 2 176 0 818 249 10 61 chr9 33783803 33784100 -84078527 - AluSp SINE Alu -19 284 3 261 0 0 0 chr9 33785160 33785189 -84077438 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2621 32 7 3 chr9 33785684 33785993 -84076634 + AluY SINE Alu 1 310 -1 6467 123 36 6 chr9 33786077 33788128 -84074499 + L1MA2 LINE L1 4188 6304 0 21 0 0 0 chr9 33788128 33788149 -84074478 + AT_rich Low_complexity Low_complexity 1 21 0 360 325 29 48 chr9 33788396 33788605 -84074022 + MIR SINE MIR 2 206 -56 * 409 362 29 14 chr9 33788576 33788783 -84073844 - L2 LINE L2 -975 2339 2130 252 309 94 40 chr9 33790081 33790230 -84072397 - MIR SINE MIR -101 161 5 230 290 30 20 chr9 33790403 33790503 -84072124 - MIR SINE MIR -13 249 149 298 0 0 0 chr9 33791416 33791452 -84071175 + L1MA5 LINE L1 6039 6074 -226 2459 46 10 3 chr9 33791606 33791913 -84070714 + AluY SINE Alu 1 309 -2 439 317 131 6 chr9 33792767 33792950 -84069677 + MIR SINE MIR 2 207 -55 2005 112 6 3 chr9 33793076 33793389 -84069238 - L1MA5A LINE L1 -6 6291 5978 332 394 80 0 chr9 33793487 33793624 -84069003 - MIR3 SINE MIR -57 151 4 547 230 79 43 chr9 33793714 33793752 -84068875 - MLT1J LTR MaLR -19 492 457 1498 134 124 18 chr9 33793752 33794027 -84068600 + AluSg1 SINE Alu 1 304 -5 547 230 79 43 chr9 33794027 33794337 -84068290 - MLT1J LTR MaLR -54 457 108 2475 207 28 32 chr9 33794631 33795282 -84067345 + L1MB7 LINE L1 5476 6123 -61 806 173 0 0 chr9 33795282 33795409 -84067218 - FLAM_C SINE Alu -6 127 1 4147 76 2 13 chr9 33796208 33796762 -84065865 - L1PA8A LINE L1 -2 6129 5582 21 0 0 0 chr9 33796767 33796788 -84065839 + AT_rich Low_complexity Low_complexity 1 21 0 358 283 62 68 chr9 33796960 33797058 -84065569 + L1M4 LINE L1 3651 3749 -2397 1599 185 15 52 chr9 33797058 33797382 -84065245 + AluJo SINE Alu 1 312 0 358 283 62 68 chr9 33797382 33797460 -84065167 + L1M4 LINE L1 3749 3826 -2320 198 0 0 0 chr9 33797460 33797482 -84065145 + (T)n Simple_repeat Simple_repeat 1 22 0 2188 124 0 10 chr9 33797501 33797815 -84064812 + AluSq SINE Alu 1 311 -2 2073 117 3 0 chr9 33797866 33798200 -84064427 + AluSx SINE Alu 1 335 0 545 147 46 18 chr9 33798208 33798317 -84064310 + MLT1H1 LTR MaLR 23 134 -421 629 193 9 0 chr9 33798343 33798457 -84064170 + FLAM_C SINE Alu 1 115 -28 333 68 0 0 chr9 33798464 33798508 -84064119 + (TC)n Simple_repeat Simple_repeat 1 44 0 357 24 0 0 chr9 33798508 33798550 -84064077 + (CA)n Simple_repeat Simple_repeat 1 42 0 915 183 170 54 chr9 33798639 33798956 -84063671 + MLT1H1 LTR MaLR 202 555 0 312 229 42 17 chr9 33799109 33799227 -84063400 + L1ME LINE L1 5617 5737 -384 2006 147 13 0 chr9 33799674 33799980 -84062647 - AluJo SINE Alu -2 310 1 268 238 50 0 chr9 33800931 33801011 -84061616 - MLT1J LTR MaLR 0 511 428 453 280 29 11 chr9 33801109 33801284 -84061343 - MLT1J LTR MaLR -331 180 3 280 272 0 11 chr9 33801345 33801437 -84061190 - L1ME LINE L1 -342 5822 5732 265 243 45 73 chr9 33801715 33801916 -84060711 + L1ME LINE L1 5628 5818 -303 204 67 0 0 chr9 33802482 33802512 -84060115 + (CCA)n Simple_repeat Simple_repeat 3 32 0 1416 186 10 71 chr9 33802877 33803188 -84059439 - AluJo SINE Alu -20 292 1 214 195 0 0 chr9 33803953 33803994 -84058633 + (TA)n Simple_repeat Simple_repeat 1 41 0 1395 139 171 4 chr9 33804774 33805019 -84057608 - AluSc SINE Alu -13 286 1 2212 120 7 0 chr9 33805140 33805448 -84057179 + AluSx SINE Alu 1 310 -2 289 274 140 13 chr9 33806236 33806393 -84056234 - L2 LINE L2 -214 3058 2882 1167 220 92 41 chr9 33806860 33807106 -84055521 + MER20B DNA MER1_type 1 233 -550 216 0 0 0 chr9 33807106 33807130 -84055497 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1167 220 92 41 chr9 33807130 33807154 -84055473 + MER20B DNA MER1_type 233 254 -529 213 39 0 0 chr9 33807154 33807180 -84055447 + (TGG)n Simple_repeat Simple_repeat 3 28 0 1167 220 92 41 chr9 33807180 33807299 -84055328 + MER20B DNA MER1_type 254 411 -372 234 225 146 0 chr9 33807420 33807509 -84055118 + L1MB8 LINE L1 6043 6144 -34 331 340 46 39 chr9 33807581 33807734 -84054893 - L2 LINE L2 -1 3271 3118 975 193 0 68 chr9 33807882 33808089 -84054538 - AluJo SINE Alu -13 299 107 427 154 0 0 chr9 33808089 33808154 -84054473 + AluJ/FLAM SINE Alu 9 73 -239 1193 297 34 25 chr9 33808723 33809373 -84053254 + L1ME LINE L1 4192 4847 -1299 1007 145 0 6 chr9 33809482 33809641 -84052986 + FRAM SINE Alu 1 157 -19 2134 113 7 0 chr9 33809646 33809960 -84052667 + AluSq SINE Alu 1 316 0 318 266 50 13 chr9 33810071 33810353 -84052274 + L1ME LINE L1 5188 5478 -686 2193 131 0 3 chr9 33810396 33810701 -84051926 - AluSg SINE Alu -6 304 1 1573 181 62 11 chr9 33810704 33810860 -84051767 - L1M3 LINE L1 -683 5488 5341 2107 95 11 0 chr9 33810860 33811133 -84051494 - AluSx SINE Alu -12 300 25 1573 181 62 11 chr9 33811133 33811470 -84051157 - L1M3 LINE L1 -830 5341 4970 1841 143 45 0 chr9 33811470 33811854 -84050773 + MLT2B2 LTR ERVL 1 448 -67 256 71 95 0 chr9 33811917 33811959 -84050668 + MLT2B2 LTR ERVL 475 520 0 2886 206 68 17 chr9 33811963 33812665 -84049962 - L1M3 LINE L1 -1181 4965 4214 2388 52 0 14 chr9 33812665 33812987 -84049640 + AluY SINE Alu 1 318 0 2886 206 68 17 chr9 33812987 33813090 -84049537 - L1M3 LINE L1 -1932 4214 4118 3119 136 34 8 chr9 33813223 33813751 -84048876 + MER72 LTR ERV1 181 722 0 702 122 20 41 chr9 33813891 33814038 -84048589 - MER72 LTR ERV1 -398 324 181 3006 201 67 17 chr9 33814170 33814273 -84048354 + L1MB2 LINE L1 4118 4214 -1932 2387 52 0 14 chr9 33814273 33814595 -84048032 - AluY SINE Alu 0 318 1 3006 201 67 17 chr9 33814595 33815298 -84047329 + L1MB2 LINE L1 4214 4965 -1181 256 71 95 0 chr9 33815302 33815344 -84047283 - MLT2B2 LTR ERVL 0 515 470 1841 146 45 0 chr9 33815407 33815791 -84046836 - MLT2B2 LTR ERVL -67 448 1 4208 174 43 13 chr9 33815791 33816128 -84046499 + L1MB2 LINE L1 4970 5295 -876 2120 92 11 0 chr9 33816128 33816401 -84046226 + AluSx SINE Alu 25 300 -12 4208 174 43 13 chr9 33816401 33816560 -84046067 + L1MB2 LINE L1 5295 5448 -723 2348 100 0 3 chr9 33816560 33816870 -84045757 + AluSg SINE Alu 1 309 -1 4208 174 43 13 chr9 33816870 33817538 -84045089 + L1MB2 LINE L1 5448 6170 -1 2402 76 3 0 chr9 33818426 33818717 -84043910 - AluSg SINE Alu -18 292 1 799 267 36 24 chr9 33818872 33819119 -84043508 + MIR SINE MIR 12 261 -1 221 241 0 17 chr9 33820710 33820768 -84041859 + CT-rich Low_complexity Low_complexity 3 59 0 730 246 66 6 chr9 33820921 33821104 -84041523 + MER91A DNA MER1_type 3 196 0 1793 131 32 18 chr9 33821439 33821744 -84040883 - AluSx SINE Alu 0 309 1 283 265 82 41 chr9 33821758 33821856 -84040771 + MIR3 SINE MIR 84 185 -23 262 173 0 93 chr9 33823446 33823521 -84039106 - MIR SINE MIR 0 262 195 211 269 19 0 chr9 33824040 33824092 -84038535 - L2 LINE L2 0 3313 3261 2240 114 0 7 chr9 33825362 33825669 -84036958 - AluSx SINE Alu -7 305 1 2406 97 0 0 chr9 33825904 33826214 -84036413 + AluSg SINE Alu 1 310 0 266 318 24 0 chr9 33827716 33827801 -84034826 - L2 LINE L2 -39 3233 3147 432 328 111 15 chr9 33827852 33828241 -84034386 - L2 LINE L2 -293 2979 2549 2236 93 14 0 chr9 33828875 33829164 -84033463 - AluSc SINE Alu -16 293 1 563 238 100 57 chr9 33829299 33829519 -84033108 + MIR SINE MIR 19 248 -14 303 49 0 0 chr9 33829526 33829567 -84033060 + (CA)n Simple_repeat Simple_repeat 2 42 0 2283 117 3 0 chr9 33829858 33830165 -84032462 + AluSx SINE Alu 1 308 -4 2155 135 0 0 chr9 33832122 33832419 -84030208 - AluSx SINE Alu -15 297 1 3011 193 72 32 chr9 33832618 33833114 -84029513 + MER63C DNA MER1_type 1 536 -524 1673 194 0 0 chr9 33833114 33833398 -84029229 + AluJb SINE Alu 1 284 -28 3011 193 72 32 chr9 33833398 33833620 -84029007 + MER63C DNA MER1_type 536 748 -182 1987 148 10 3 chr9 33833629 33833932 -84028695 + AluSx SINE Alu 1 305 -7 2216 114 3 0 chr9 33834159 33834457 -84028170 + AluSg SINE Alu 1 299 -11 216 97 0 0 chr9 33834818 33834849 -84027778 + (TG)n Simple_repeat Simple_repeat 2 32 0 22 70 0 0 chr9 33834849 33834892 -84027735 + AT_rich Low_complexity Low_complexity 1 43 0 252 194 0 60 chr9 33834913 33834980 -84027647 - MLT2F LTR ERVL -2 661 599 579 251 94 77 chr9 33834999 33835126 -84027501 - MLT2C1 LTR ERVL -40 357 234 762 195 44 15 chr9 33835126 33835304 -84027323 - MLT1E1 LTR MaLR -350 304 64 579 251 94 77 chr9 33835304 33835350 -84027277 - MLT2C1 LTR ERVL -163 234 1 254 218 18 0 chr9 33836046 33836101 -84026526 - L2 LINE L2 0 3272 3217 1941 157 23 0 chr9 33836468 33836767 -84025860 - AluSx SINE Alu -6 306 1 428 202 0 22 chr9 33837069 33837158 -84025469 + MIR SINE MIR 95 181 -81 1299 205 89 17 chr9 33837160 33837453 -84025174 + MER58B DNA MER1_type 28 341 0 285 148 0 115 chr9 33837453 33837514 -84025113 + MIR SINE MIR 209 262 0 365 205 107 8 chr9 33838431 33838553 -84024074 - MLT1J2 LTR MaLR 0 450 317 342 257 97 70 chr9 33838550 33838784 -84023843 - MLT1J2 LTR MaLR -79 371 120 * 293 232 0 29 chr9 33838793 33838862 -84023765 - MLT1J1 LTR MaLR -365 81 15 190 329 134 0 chr9 33838981 33839063 -84023564 + MIR SINE MIR 45 137 -71 1778 198 0 0 chr9 33839066 33839359 -84023268 - AluJb SINE Alu -18 294 2 287 266 51 25 chr9 33839529 33839608 -84023019 - MIR SINE MIR -155 107 27 339 305 107 0 chr9 33839623 33839754 -84022873 + MIR SINE MIR 118 262 0 200 322 161 46 chr9 33840336 33840659 -84021968 + L2 LINE L2 2602 2961 -353 867 98 32 0 chr9 33841024 33841147 -84021480 - AluJo SINE Alu -3 309 183 642 313 40 4 chr9 33842044 33842271 -84020356 + MIR SINE MIR 28 262 0 2414 45 42 0 chr9 33843064 33843352 -84019275 + AluY SINE Alu 1 300 -11 230 274 0 0 chr9 33844393 33844444 -84018183 + L1M2 LINE L1 5612 5662 -635 275 138 224 0 chr9 33844611 33844669 -84017958 - AluS SINE Alu -2 299 229 733 152 15 30 chr9 33844669 33844801 -84017826 - AluJo SINE Alu -119 193 64 477 275 180 0 chr9 33845705 33845883 -84016744 - MIR SINE MIR -19 243 34 2995 177 73 45 chr9 33845986 33846923 -84015704 - L1MDb LINE L1 -4469 1937 942 2823 84 3 6 chr9 33847058 33847414 -84015213 - THE1A LTR MaLR 0 355 1 2098 111 7 7 chr9 33848169 33848467 -84014160 + AluSg SINE Alu 1 298 -12 1267 176 47 4 chr9 33848473 33848728 -84013899 + L1MD3 LINE L1 7730 7995 0 22 0 0 0 chr9 33850121 33850143 -84012484 + AT_rich Low_complexity Low_complexity 1 22 0 525 253 150 16 chr9 33850347 33850600 -84012027 + L2 LINE L2 1810 2096 -1218 199 211 14 14 chr9 33850610 33850681 -84011946 + (TA)n Simple_repeat Simple_repeat 1 71 0 264 272 88 59 chr9 33851250 33851386 -84011241 + MIR SINE MIR 95 234 -28 218 204 0 0 chr9 33851510 33851559 -84011068 + A-rich Low_complexity Low_complexity 1 49 0 1612 135 28 28 chr9 33851607 33851889 -84010738 + THE1C LTR MaLR 94 375 0 2144 113 7 3 chr9 33851968 33852260 -84010367 - AluSx SINE Alu -19 293 1 217 207 216 27 chr9 33852540 33852651 -84009976 + MER5B DNA MER1_type 18 149 -29 229 217 183 0 chr9 33852972 33853032 -84009595 - MER103 DNA DNA -95 71 1 284 304 65 22 chr9 33853702 33853840 -84008787 + MLT1K LTR MaLR 445 588 0 1333 134 193 8 chr9 33854185 33854319 -84008308 - AluJo SINE Alu -18 284 176 218 54 0 27 chr9 33854319 33854356 -84008271 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1333 134 193 8 chr9 33854356 33854460 -84008167 - AluJo SINE Alu -126 176 2 1573 164 98 33 chr9 33854560 33854895 -84007732 - MLT1A1 LTR MaLR -6 359 3 2198 104 3 3 chr9 33855063 33855360 -84007267 - AluSq SINE Alu -16 297 1 22 35 0 0 chr9 33855369 33855398 -84007229 + AT_rich Low_complexity Low_complexity 1 29 0 188 388 12 0 chr9 33855413 33855493 -84007134 - MIR SINE MIR -142 120 40 608 163 0 116 chr9 33855557 33855704 -84006923 + MLT2B2 LTR ERVL 254 383 -132 * 891 237 22 72 chr9 33855702 33855980 -84006647 + MLT1B LTR MaLR 123 386 -4 328 291 223 0 chr9 33857225 33857373 -84005254 + MER5A DNA MER1_type 9 189 0 18550 135 33 49 chr9 33858119 33861562 -84001065 + L1P LINE L1 1 3389 -2757 220 342 33 0 chr9 33862461 33862581 -84000046 - MIR SINE MIR -1 261 138 21 0 0 0 chr9 33862959 33862980 -83999647 + AT_rich Low_complexity Low_complexity 1 21 0 294 298 12 12 chr9 33863047 33863131 -83999496 + MER5A DNA MER1_type 36 119 -70 594 187 8 67 chr9 33863186 33863320 -83999307 + MER5B DNA MER1_type 1 126 -52 2271 124 0 3 chr9 33865126 33865433 -83997194 - AluSx SINE Alu -6 306 1 2448 223 211 53 chr9 33866436 33867897 -83994730 - HAL1 LINE L1 -137 2370 678 849 254 56 20 chr9 33868047 33868299 -83994328 + MIR SINE MIR 2 262 0 430 250 92 37 chr9 33868400 33868564 -83994063 - MIR SINE MIR -31 231 59 212 274 143 12 chr9 33869413 33869497 -83993130 + MER5A DNA MER1_type 95 189 0 1702 182 0 10 chr9 33871157 33871453 -83991174 + AluJo SINE Alu 1 293 -19 1168 184 265 84 chr9 33871473 33871958 -83990669 + MLT1E LTR MaLR 2 593 0 1662 224 67 9 chr9 33873037 33873627 -83989000 + MER82 DNA MER2_type 2 653 0 3116 132 2 4 chr9 33874304 33874760 -83987867 + Tigger1 DNA MER2_type 1963 2417 -1 443 206 10 41 chr9 33874761 33874858 -83987769 - MER63 DNA MER1_type -342 720 1 2137 111 4 0 chr9 33875383 33875662 -83986965 + AluSx SINE Alu 5 284 -28 2976 207 72 30 chr9 33875669 33876074 -83986553 + L1ME1 LINE L1 4323 4709 -1457 2579 93 25 0 chr9 33876074 33876429 -83986198 + THE1B LTR MaLR 1 364 0 2976 207 72 30 chr9 33876429 33877679 -83984948 + L1ME1 LINE L1 4709 6043 -123 408 222 18 78 chr9 33877650 33877734 -83984893 + L1MA10 LINE L1 6175 6246 -88 * 2121 129 10 0 chr9 33877734 33878028 -83984599 - AluSx SINE Alu -15 297 1 408 222 18 78 chr9 33878028 33878110 -83984517 + L1MA10 LINE L1 6246 6331 -3 15041 57 8 7 chr9 33878214 33880182 -83982445 + HERVL-A1 LTR ERVL 3684 5654 0 2566 102 34 8 chr9 33880182 33880586 -83982041 + MLT2A1 LTR ERVL 1 479 -36 272 36 121 0 chr9 33880586 33880669 -83981958 + (TA)n Simple_repeat Simple_repeat 2 94 0 2575 188 52 5 chr9 33880672 33881232 -83981395 - L1MCa LINE L1 -5817 609 24 633 240 66 0 chr9 33881265 33881461 -83981166 + LTR50 LTR ERVL 14 222 -573 301 292 146 0 chr9 33881657 33881787 -83980840 - MIR SINE MIR -12 250 102 204 277 0 0 chr9 33883345 33883392 -83979235 + MIR SINE MIR 168 214 -48 229 259 0 0 chr9 33885188 33885242 -83977385 + (TG)n Simple_repeat Simple_repeat 1 54 0 565 163 0 0 chr9 33885428 33885526 -83977101 - AluSp/q SINE Alu -10 303 206 348 243 28 28 chr9 33886698 33886805 -83975822 + MIR SINE MIR 94 200 -62 2191 98 0 14 chr9 33886882 33887177 -83975450 + AluY SINE Alu 1 291 -20 528 359 67 22 chr9 33889221 33889536 -83973091 - L2 LINE L2 -15 3257 2929 210 37 0 0 chr9 33890340 33890367 -83972260 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2050 100 0 0 chr9 33890371 33890631 -83971996 - AluSc SINE Alu -21 288 29 315 228 109 20 chr9 33890843 33890944 -83971683 - L2 LINE L2 -1 3271 3162 227 31 31 0 chr9 33890962 33890994 -83971633 + (TGG)n Simple_repeat Simple_repeat 1 33 0 246 156 47 0 chr9 33891630 33891694 -83970933 + (TA)n Simple_repeat Simple_repeat 1 67 0 258 286 61 0 chr9 33892961 33893059 -83969568 - MLT1G1 LTR MaLR 0 595 492 1644 197 56 0 chr9 33893095 33893470 -83969157 - L1ME2 LINE L1 -200 5964 5569 1310 196 25 0 chr9 33893478 33893763 -83968864 - L1ME1 LINE L1 -223 6441 6150 1115 151 120 224 chr9 33893881 33894489 -83968138 - MLT2B3 LTR ERVL -7 547 3 386 164 19 39 chr9 33894529 33894633 -83967994 - L1ME1 LINE L1 -1155 5489 5388 2973 209 50 71 chr9 33894643 33895206 -83967421 - L1ME1 LINE L1 -5601 941 405 6021 121 16 0 chr9 33895206 33896217 -83966410 - L1PA14 LINE L1 -1 6160 5144 2973 209 50 71 chr9 33896217 33896598 -83966029 - L1ME1 LINE L1 -6137 405 17 187 341 59 0 chr9 33897361 33897446 -83965181 + L3 LINE CR1 1308 1397 -180 186 294 0 0 chr9 33897454 33897505 -83965122 + L2 LINE L2 3017 3067 -205 1005 209 19 0 chr9 33897596 33897806 -83964821 + MER20 DNA MER1_type 2 215 -4 346 239 147 112 chr9 33898728 33898925 -83963702 - MIR SINE MIR -13 249 46 625 310 78 0 chr9 33900647 33900889 -83961738 + MIR SINE MIR 2 262 0 239 136 0 61 chr9 33901226 33901292 -83961335 - L1MC4 LINE L1 -1345 6697 6636 393 264 21 7 chr9 33901340 33901480 -83961147 + (TA)n Simple_repeat Simple_repeat 1 142 0 264 111 0 0 chr9 33901483 33901528 -83961099 + (TG)n Simple_repeat Simple_repeat 1 45 0 274 240 112 56 chr9 33902150 33902329 -83960298 - LTR67 LTR ERVL -9 548 360 250 273 0 0 chr9 33902391 33902446 -83960181 - MER63 DNA MER1_type 0 1061 1007 24 0 0 0 chr9 33902453 33902477 -83960150 + AT_rich Low_complexity Low_complexity 1 24 0 5410 159 16 7 chr9 33902485 33904462 -83958165 - L1MA4 LINE L1 -7 6475 4484 3394 183 16 5 chr9 33904458 33905099 -83957528 - L1MA4 LINE L1 -4676 652 5 * 13573 134 58 6 chr9 33905171 33907462 -83955165 + Tigger1 DNA MER2_type 2 2413 -5 398 206 10 41 chr9 33907467 33907564 -83955063 - MER63 DNA MER1_type -342 720 1 2254 93 4 0 chr9 33908089 33908407 -83954220 + AluSp SINE Alu 5 323 0 343 201 280 37 chr9 33908999 33909267 -83953360 - L1ME4a LINE L1 -7 6114 5782 413 63 38 13 chr9 33909282 33909361 -83953266 + (TCTA)n Simple_repeat Simple_repeat 1 81 0 382 277 107 0 chr9 33909385 33909497 -83953130 + FLAM_A SINE Alu 2 125 -8 236 222 0 69 chr9 33909508 33909580 -83953047 - L1ME4a LINE L1 -433 5688 5622 536 314 90 22 chr9 33909647 33909870 -83952757 + MIR SINE MIR 3 240 -22 234 283 132 0 chr9 33910205 33910311 -83952316 + LTR16A1 LTR ERVL 338 457 0 867 196 27 38 chr9 33911162 33911346 -83951281 + MER5A DNA MER1_type 7 188 -1 248 291 81 108 chr9 33911376 33911599 -83951028 + L2 LINE L2 2956 3172 -100 2791 93 17 14 chr9 33911847 33912268 -83950359 - L1MA3 LINE L1 0 6305 5884 187 333 0 0 chr9 33912887 33912947 -83949680 + L2 LINE L2 3244 3303 -10 21 0 0 0 chr9 33915959 33915980 -83946647 + AT_rich Low_complexity Low_complexity 1 21 0 1908 226 75 33 chr9 33916324 33916630 -83945997 + MER90 LTR ERV1 1 341 -234 2209 136 42 20 chr9 33916630 33916984 -83945643 + THE1B LTR MaLR 1 362 -2 1908 226 75 33 chr9 33916984 33917220 -83945407 + MER90 LTR ERV1 341 566 -9 225 314 14 0 chr9 33917745 33917815 -83944812 + CT-rich Low_complexity Low_complexity 2 72 0 7641 133 14 13 chr9 33917882 33918034 -83944593 - L1MA2 LINE L1 -6 7717 7567 2086 4 0 0 chr9 33918034 33918259 -83944368 - AluYa5 SINE Alu -2 309 85 7641 133 14 13 chr9 33918259 33920468 -83942159 - L1MA2 LINE L1 -156 7567 5350 2236 107 7 0 chr9 33920468 33920767 -83941860 - AluY SINE Alu -10 301 1 7641 133 14 13 chr9 33920767 33920889 -83941738 - L1MA2 LINE L1 -2373 5350 5230 483 117 0 0 chr9 33920892 33920969 -83941658 - Alu SINE Alu 0 311 235 10945 119 56 3 chr9 33920969 33922741 -83939886 - L1MA2 LINE L1 -4594 2971 1105 314 205 116 27 chr9 33922737 33922849 -83939778 - L1MA2 LINE L1 -7430 135 14 * 37 52 0 0 chr9 33922992 33923050 -83939577 + AT_rich Low_complexity Low_complexity 1 58 0 1136 133 7 5 chr9 33923168 33923389 -83939238 - L1ME LINE L1 -655 5509 5290 22 0 0 0 chr9 33923444 33923466 -83939161 + AT_rich Low_complexity Low_complexity 1 22 0 1424 123 33 12 chr9 33923585 33923829 -83938798 - L1PB2 LINE L1 -8 6143 5895 225 245 128 11 chr9 33923957 33924051 -83938576 - MIR SINE MIR -67 195 91 3277 178 19 32 chr9 33924163 33924556 -83938071 + L1 LINE L1 3995 4374 -1772 225 0 0 0 chr9 33924556 33924581 -83938046 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 3277 178 19 32 chr9 33924581 33924979 -83937648 + L1 LINE L1 4374 4776 -1370 * 5458 38 81 0 chr9 33924974 33925663 -83936964 - L1P LINE L1 -1942 4204 3460 3554 132 28 46 chr9 33925767 33926031 -83936596 - LTR26 LTR ERV1 -2 601 334 2252 64 58 3 chr9 33926031 33926326 -83936301 + AluY SINE Alu 1 311 0 3554 132 28 46 chr9 33926326 33926673 -83935954 - LTR26 LTR ERV1 -269 334 1 445 193 57 0 chr9 33927954 33928042 -83934585 - LTR40b LTR ERVL 0 462 370 38 39 0 0 chr9 33928092 33928144 -83934483 + AT_rich Low_complexity Low_complexity 1 52 0 24 32 0 0 chr9 33928247 33928278 -83934349 + AT_rich Low_complexity Low_complexity 1 31 0 1352 203 4 4 chr9 33928488 33928724 -83933903 + MER8 DNA MER2_type 1 236 -3 251 328 109 0 chr9 33928729 33928848 -83933779 - L2 LINE L2 -1 3271 3140 780 240 114 94 chr9 33928898 33929307 -83933320 - L1ME4a LINE L1 -63 6452 6018 1012 165 21 5 chr9 33929307 33929501 -83933126 - L1PA16 LINE L1 -7 6159 5963 780 240 114 94 chr9 33929501 33929871 -83932756 - L1ME4a LINE L1 -497 6018 5657 226 321 42 103 chr9 33929962 33930127 -83932500 - MIR SINE MIR -93 169 15 1379 227 66 5 chr9 33930431 33930850 -83931777 - L1MEc LINE L1 -3440 3100 2677 230 139 0 0 chr9 33930879 33930915 -83931712 - MLT1A1 LTR MaLR 0 365 330 1131 208 35 76 chr9 33930989 33931330 -83931297 - MLT1A1 LTR MaLR -38 327 1 839 198 96 20 chr9 33931331 33932787 -83929840 - L1MEc LINE L1 -3917 2623 990 648 276 51 32 chr9 33932779 33932996 -83929631 + L1MDa LINE L1 240 460 -6080 * 1685 256 116 13 chr9 33933012 33934034 -83928593 - L1MEc LINE L1 -3363 2852 1745 23 33 0 0 chr9 33934034 33934064 -83928563 + AT_rich Low_complexity Low_complexity 1 30 0 25 31 0 0 chr9 33934105 33934137 -83928490 + AT_rich Low_complexity Low_complexity 1 32 0 3422 182 3 5 chr9 33934222 33934859 -83927768 - L1MA7 LINE L1 0 6291 5656 307 146 0 0 chr9 33934875 33934923 -83927704 - L1MA7 LINE L1 -739 5573 5526 1403 236 149 22 chr9 33934937 33935674 -83926953 - L1MCa LINE L1 -4173 2253 899 369 0 0 0 chr9 33936212 33936253 -83926374 + (CA)n Simple_repeat Simple_repeat 2 42 0 199 118 29 0 chr9 33936419 33936453 -83926174 - L2 LINE L2 0 3272 3238 225 292 131 31 chr9 33938274 33938404 -83924223 - MIR SINE MIR -71 191 49 6816 118 58 81 chr9 33938685 33940015 -83922612 - HSMAR2 DNA Mariner -2 1300 2 381 22 0 0 chr9 33940015 33940061 -83922566 + (TG)n Simple_repeat Simple_repeat 2 47 0 648 264 61 7 chr9 33940980 33941243 -83921384 + L1ME4a LINE L1 5478 5757 -364 14805 194 21 10 chr9 33941344 33947483 -83915144 + L1PB1 LINE L1 6 6516 -351 1032 149 0 0 chr9 33947483 33947701 -83914926 + (TA)n Simple_repeat Simple_repeat 1 218 0 14805 194 21 10 chr9 33947701 33948050 -83914577 + L1PB1 LINE L1 6516 6859 -8 311 226 64 59 chr9 33948058 33948262 -83914365 + L1ME4a LINE L1 5909 6113 -8 21 0 0 0 chr9 33948301 33948322 -83914305 + AT_rich Low_complexity Low_complexity 1 21 0 274 282 70 0 chr9 33948750 33948821 -83913806 - MER91C DNA MER1_type -64 76 1 499 243 37 0 chr9 33949131 33949238 -83913389 - MIR SINE MIR -104 158 48 22 56 0 0 chr9 33951582 33951618 -83911009 + AT_rich Low_complexity Low_complexity 1 36 0 397 359 164 16 chr9 33951672 33952056 -83910571 + L2 LINE L2 2832 3272 0 5125 104 16 30 chr9 33952246 33953066 -83909561 + L1PA16 LINE L1 5356 6163 -3 580 283 30 63 chr9 33953121 33953358 -83909269 - MIR SINE MIR -20 242 14 386 233 61 104 chr9 33954272 33954435 -83908192 + MIR3 SINE MIR 45 200 -8 426 20 0 0 chr9 33955210 33955261 -83907366 + (GA)n Simple_repeat Simple_repeat 1 51 0 1594 219 107 15 chr9 33955507 33955945 -83906682 + MLT2B1 LTR ERVL 1 488 -32 317 82 20 0 chr9 33955945 33955994 -83906633 + (TCTA)n Simple_repeat Simple_repeat 2 51 0 1594 219 107 15 chr9 33955994 33956031 -83906596 + MLT2B1 LTR ERVL 488 520 0 662 183 0 0 chr9 33956031 33956146 -83906481 + MLT1A2-int LTR MaLR 1 115 -1256 * 2179 194 52 9 chr9 33956137 33956601 -83906026 + MLT1A2-int LTR MaLR 260 743 -628 255 275 0 0 chr9 33956716 33956785 -83905842 + MLT1A2-int LTR MaLR 679 747 -988 38 22 0 0 chr9 33956843 33956888 -83905739 + AT_rich Low_complexity Low_complexity 1 45 0 1724 163 23 20 chr9 33956914 33957215 -83905412 + MLT1A2-int LTR MaLR 1353 1654 -81 1148 246 69 17 chr9 33957215 33957503 -83905124 + MLT1A2 LTR MaLR 68 370 -4 251 226 156 54 chr9 33958068 33958201 -83904426 + MIR3 SINE MIR 10 153 -66 211 359 72 24 chr9 33958478 33958645 -83903982 + L2 LINE L2 2916 3090 -182 327 261 189 9 chr9 33958794 33958905 -83903722 + MER5A DNA MER1_type 59 189 0 373 345 122 0 chr9 33959154 33959302 -83903325 - MER91B DNA MER1_type -11 179 14 478 297 90 44 chr9 33959520 33959887 -83902740 - MLT1H1 LTR MaLR -107 448 65 219 365 56 24 chr9 33960225 33960351 -83902276 + MIR3 SINE MIR 2 131 -77 2449 35 0 3 chr9 33960705 33961007 -83901620 - AluY SINE Alu 0 301 1 25 0 0 0 chr9 33961476 33961501 -83901126 + AT_rich Low_complexity Low_complexity 1 25 0 1714 209 106 51 chr9 33961614 33962106 -83900521 + MLT2B1 LTR ERVL 1 519 -1 263 191 221 0 chr9 33963095 33963163 -83899464 + MIR SINE MIR 180 262 0 3667 114 88 25 chr9 33963240 33963707 -83898920 - Tigger3b DNA MER2_type -1797 1231 708 2350 62 27 0 chr9 33963707 33963999 -83898628 - AluSc SINE Alu -9 300 1 3667 114 88 25 chr9 33963999 33964205 -83898422 - Tigger3b DNA MER2_type -2320 708 516 2811 143 15 13 chr9 33964411 33964872 -83897755 - Tigger3b DNA MER2_type -768 463 2 27 0 0 0 chr9 33965815 33965842 -83896785 + AT_rich Low_complexity Low_complexity 1 27 0 308 378 111 0 chr9 33966026 33966161 -83896466 + MLT1K LTR MaLR 2 151 -437 1268 86 19 0 chr9 33966163 33966325 -83896302 - AluSx SINE Alu -147 165 1 536 295 68 14 chr9 33966397 33966604 -83896023 + MLT1K LTR MaLR 369 586 -2 370 289 5 123 chr9 33966882 33967014 -83895613 - MER5A DNA MER1_type -1 188 87 1812 122 0 12 chr9 33967014 33967269 -83895358 - AluSg SINE Alu -55 255 4 370 289 5 123 chr9 33967269 33967340 -83895287 - MER5A DNA MER1_type -102 87 9 2074 171 63 145 chr9 33968225 33969017 -83893610 + LTR8A LTR ERV1 1 727 0 399 310 16 8 chr9 33970242 33970371 -83892256 + MER5A DNA MER1_type 38 167 -22 25 0 0 0 chr9 33970421 33970446 -83892181 + AT_rich Low_complexity Low_complexity 1 25 0 544 255 138 50 chr9 33970756 33971114 -83891513 - MLT1F1 LTR MaLR 0 593 179 396 138 0 0 chr9 33971114 33971179 -83891448 + (GA)n Simple_repeat Simple_repeat 1 65 0 807 204 47 43 chr9 33971179 33971390 -83891237 - MLT1F1 LTR MaLR -355 212 1 216 235 0 0 chr9 33971405 33971456 -83891171 - MER91B DNA MER1_type -136 54 4 665 333 120 28 chr9 33971654 33972421 -83890206 + L2 LINE L2 2482 3313 0 924 206 131 14 chr9 33972514 33972728 -83889899 - MER8 DNA MER2_type 0 239 1 206 288 55 27 chr9 33973323 33973396 -83889231 + L2 LINE L2 3198 3272 0 193 350 80 10 chr9 33974236 33974336 -83888291 - L2 LINE L2 -43 3229 3123 1691 260 61 38 chr9 33974455 33975029 -83887598 - MLT1E LTR MaLR -2 591 5 192 339 50 50 chr9 33975217 33975250 -83887377 - L2 LINE L2 -464 2850 2818 1567 115 23 109 chr9 33975250 33975598 -83887029 + L1MA10 LINE L1 6015 6332 -2 192 339 50 50 chr9 33975598 33975744 -83886883 - L2 LINE L2 -495 2819 2671 233 212 12 82 chr9 33976186 33976271 -83886356 + MIR3 SINE MIR 118 196 -12 2512 74 0 0 chr9 33976307 33976616 -83886011 + AluY SINE Alu 1 309 -2 31 0 0 0 chr9 33977377 33977408 -83885219 + AT_rich Low_complexity Low_complexity 1 31 0 3464 222 22 53 chr9 33977496 33977986 -83884641 - L1ME1 LINE L1 -9 6157 5653 234 0 0 0 chr9 33977986 33978012 -83884615 + (TG)n Simple_repeat Simple_repeat 1 26 0 3464 222 22 53 chr9 33978012 33978686 -83883941 - L1ME1 LINE L1 -513 5653 4999 262 135 0 0 chr9 33978686 33978723 -83883904 + U2 snRNA snRNA 1 37 -151 3464 222 22 53 chr9 33978723 33978833 -83883794 - L1ME1 LINE L1 -1167 4999 4887 473 236 55 6 chr9 33978824 33978989 -83883638 - L1M4 LINE L1 -893 5253 5081 * 201 367 114 30 chr9 33979797 33979990 -83882637 + L2 LINE L2 1613 1788 -1526 2480 56 0 10 chr9 33979990 33980295 -83882332 - AluY SINE Alu -9 302 1 201 367 114 30 chr9 33980295 33980532 -83882095 + L2 LINE L2 1788 2079 -1235 2454 43 3 55 chr9 33982523 33982849 -83879778 + AluY SINE Alu 1 309 -2 213 337 43 11 chr9 33982849 33982941 -83879686 - MIR SINE MIR -69 139 45 320 323 42 48 chr9 33983139 33983470 -83879157 - L1M4 LINE L1 -802 5344 5016 611 176 0 0 chr9 33983515 33983617 -83879010 + AluJ/FLAM SINE Alu 1 102 -210 279 0 0 0 chr9 33984840 33984871 -83877756 + (CA)n Simple_repeat Simple_repeat 1 31 0 434 272 64 35 chr9 33985569 33985742 -83876885 - MIR3 SINE MIR -7 201 24 21 0 0 0 chr9 33986218 33986239 -83876388 + AT_rich Low_complexity Low_complexity 1 21 0 404 342 56 60 chr9 33986747 33987013 -83875614 - L2 LINE L2 -58 3214 2950 38 39 0 0 chr9 33987227 33987279 -83875348 + AT_rich Low_complexity Low_complexity 1 52 0 415 332 97 8 chr9 33989362 33989609 -83873018 + L2 LINE L2 3006 3274 -39 3203 174 49 22 chr9 33990007 33990277 -83872350 - L1MD2 LINE L1 0 6359 6098 2180 103 143 11 chr9 33990277 33990655 -83871972 + MSTA LTR MaLR 1 428 0 3203 174 49 22 chr9 33990655 33991072 -83871555 - L1MD2 LINE L1 -261 6098 5653 2373 129 86 14 chr9 33991237 33991656 -83870971 - L1PA16 LINE L1 0 6166 5718 1654 201 39 0 chr9 33991656 33992040 -83870587 - L1M4 LINE L1 -1384 4762 4364 1901 203 101 53 chr9 33992053 33992431 -83870196 + L1MC4 LINE L1 7407 7826 -216 1608 184 10 19 chr9 33992431 33992741 -83869886 - AluJo SINE Alu -3 309 3 1901 203 101 53 chr9 33992741 33992968 -83869659 + L1MC4 LINE L1 7826 8041 -1 231 151 38 38 chr9 33992987 33993040 -83869587 + L2 LINE L2 3245 3297 -16 654 322 59 22 chr9 33993484 33993928 -83868699 - L1ME4a LINE L1 -193 5928 5469 303 315 22 11 chr9 33993986 33994075 -83868552 + MER5B DNA MER1_type 1 90 -88 1504 143 147 16 chr9 33994447 33994761 -83867866 + L1PA15 LINE L1 5811 6165 0 3438 160 42 30 chr9 33994871 33995583 -83867044 - L1MD1 LINE L1 -6 6630 5910 1402 111 0 5 chr9 33995583 33995772 -83866855 + THE1B LTR MaLR 2 189 -175 428 151 0 14 chr9 33995777 33995850 -83866777 + THE1B LTR MaLR 304 375 0 4822 226 85 71 chr9 33995850 33997358 -83865269 - L1MD1 LINE L1 -743 5797 4312 2053 123 17 0 chr9 33997358 33997651 -83864976 - AluSx SINE Alu -12 300 3 4822 226 85 71 chr9 33997651 33997891 -83864736 - L1MD1 LINE L1 -2228 4312 4077 644 227 0 16 chr9 33997891 33998019 -83864608 + FLAM_A SINE Alu 1 126 -7 4822 226 85 71 chr9 33998019 33998387 -83864240 - L1MD1 LINE L1 -2463 4077 3786 2860 127 47 2 chr9 33998387 33998851 -83863776 - MER31A LTR ERV1 0 485 1 4822 226 85 71 chr9 33998851 33999161 -83863466 - L1MD1 LINE L1 -2754 3786 3482 1721 257 32 28 chr9 33999154 33999624 -83863003 - L1MD1 LINE L1 -5904 636 165 * 5688 177 13 21 chr9 33999603 34000167 -83862460 - L1MA4A LINE L1 -301 6396 5829 1555 158 75 7 chr9 34000167 34000446 -83862181 - AluJb SINE Alu -14 298 1 5688 177 13 21 chr9 34000446 34001761 -83860866 - L1MA4A LINE L1 -868 5829 4529 42222 38 24 1 chr9 34002361 34008373 -83854254 + L1PA3 LINE L1 2 6151 -4 3159 23 0 18 chr9 34008383 34008769 -83853858 + L1PA4 LINE L1 5770 6148 -7 2149 109 3 10 chr9 34009105 34009417 -83853210 + AluSq SINE Alu 1 310 -3 1212 174 81 4 chr9 34009674 34009921 -83852706 - ORSL DNA AcHobo -9 266 1 336 293 41 24 chr9 34009928 34010051 -83852576 + L2 LINE L2 3188 3312 -1 751 261 28 51 chr9 34010440 34010693 -83851934 - MIR SINE MIR -13 249 3 1933 159 0 14 chr9 34010917 34011212 -83851415 + AluSx SINE Alu 1 291 -21 3138 84 18 14 chr9 34011702 34012144 -83850483 + MLT2A1 LTR ERVL 1 444 0 213 154 0 0 chr9 34012214 34012253 -83850374 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 3542 166 6 3 chr9 34012321 34012954 -83849673 - L1PA16 LINE L1 0 6166 5532 253 252 9 139 chr9 34015041 34015156 -83847471 - MIR3 SINE MIR -13 195 96 761 307 29 0 chr9 34015163 34015404 -83847223 - MER90 LTR ERV1 -4 610 363 43093 47 1 1 chr9 34015441 34021592 -83841035 + L1PA4 LINE L1 1 6155 0 1369 211 29 0 chr9 34021798 34022149 -83840478 - L1MA4 LINE L1 -5 6295 5935 732 145 109 7 chr9 34022330 34022468 -83840159 - Tigger1 DNA MER2_type -1464 954 803 857 285 136 35 chr9 34022625 34023463 -83839164 + HAL1 LINE L1 1585 2507 0 274 250 22 43 chr9 34023555 34023647 -83838980 + L1MDa LINE L1 3 92 -6448 280 182 55 0 chr9 34023758 34023875 -83838752 + L1M4 LINE L1 5188 5311 -848 2081 103 164 14 chr9 34023875 34024235 -83838392 - MSTA LTR MaLR 0 428 15 314 141 104 178 chr9 34024285 34024448 -83838179 + L1MD3 LINE L1 7832 7982 -13 259 367 69 11 chr9 34024524 34024712 -83837915 + MIR SINE MIR 57 255 -7 1762 136 63 41 chr9 34025551 34025918 -83836709 - THE1C LTR MaLR 0 375 1 237 228 88 44 chr9 34026035 34026149 -83836478 + L1MDa LINE L1 478 596 -5934 391 322 26 41 chr9 34026222 34026489 -83836138 + L1MDa LINE L1 1059 1321 -5209 2021 126 4 0 chr9 34026489 34026788 -83835839 + AluSg SINE Alu 1 300 0 295 279 105 12 chr9 34027024 34027196 -83835431 + L1ME1 LINE L1 5774 5961 -205 23 0 0 0 chr9 34027345 34027368 -83835259 + AT_rich Low_complexity Low_complexity 1 23 0 487 220 193 7 chr9 34030733 34030883 -83831744 - MER5B DNA MER1_type 0 178 1 2004 141 3 7 chr9 34031628 34031934 -83830693 - AluSx SINE Alu -7 305 1 205 277 48 48 chr9 34033929 34034012 -83828615 + MIR SINE MIR 158 240 -22 11763 193 29 14 chr9 34034062 34034722 -83827905 + L1MA4A LINE L1 2489 3137 -3166 2240 86 3 26 chr9 34034722 34035024 -83827603 + AluSc SINE Alu 1 295 -14 11763 193 29 14 chr9 34035024 34038037 -83824590 + L1MA4A LINE L1 3137 6280 -23 1821 236 42 11 chr9 34038053 34038524 -83824103 - Charlie1a DNA MER1_type -968 487 2 467 165 46 9 chr9 34038755 34038864 -83823763 + LTR50 LTR ERVL 556 668 -127 1739 202 19 11 chr9 34038866 34039228 -83823399 - MER89 LTR ERV1 0 559 195 412 135 54 0 chr9 34039210 34039284 -83823343 - MER89 LTR ERV1 -481 78 1 * 355 176 40 0 chr9 34039287 34039361 -83823266 + LTR50 LTR ERVL 711 787 -8 326 278 56 0 chr9 34039533 34039641 -83822986 + MER81 DNA DNA 1 114 0 1220 200 54 70 chr9 34041126 34041662 -83820965 - MER67C LTR ERV1 0 514 2 841 229 64 24 chr9 34041745 34041994 -83820633 - MER67C-int LTR ERV1 -100 4836 4578 333 241 0 35 chr9 34042129 34042216 -83820411 - MER67C-int LTR ERV1 -371 4565 4482 260 191 48 0 chr9 34042337 34042400 -83820227 - MER67C-int LTR ERV1 -735 4201 4136 19222 38 2 2 chr9 34042409 34045550 -83817077 - L1PA5 LINE L1 -4 6150 3006 512 215 9 0 chr9 34045554 34045661 -83816966 + MER31-int LTR ERV1 4006 4113 -823 2419 114 62 24 chr9 34045830 34045917 -83816710 + Tigger3(Golem) DNA MER2_type 2245 2327 -701 1919 143 7 29 chr9 34045917 34046224 -83816403 - AluJo SINE Alu -12 300 1 2419 114 62 24 chr9 34046224 34046601 -83816026 + Tigger3(Golem) DNA MER2_type 2327 2727 -301 964 213 19 5 chr9 34049226 34049437 -83813190 - MER20 DNA MER1_type -4 215 2 186 294 0 0 chr9 34049528 34049579 -83813048 - L2 LINE L2 -205 3067 3017 187 341 59 0 chr9 34049587 34049672 -83812955 - L3 LINE CR1 -180 1397 1308 1322 198 42 66 chr9 34050433 34050811 -83811816 + L1M4 LINE L1 17 385 -6157 1946 126 6 9 chr9 34050814 34051250 -83811377 + L1P4 LINE L1 5144 5579 -582 512 163 41 0 chr9 34051375 34051473 -83811154 - AluSx SINE Alu -6 303 202 * 754 108 0 18 chr9 34051471 34051582 -83811045 - AluSx SINE Alu -201 111 3 310 323 159 20 chr9 34051639 34051840 -83810787 + MIR SINE MIR 34 262 0 197 358 74 0 chr9 34051842 34051937 -83810690 - MIR3 SINE MIR -100 108 7 1183 158 67 16 chr9 34052435 34052688 -83809939 + L1MD3 LINE L1 7710 7975 -20 182 271 0 0 chr9 34054397 34054445 -83808182 + MER5A DNA MER1_type 2 49 -140 386 233 22 0 chr9 34054544 34054634 -83807993 - L2 LINE L2 -1 3312 3221 1008 267 8 19 chr9 34055955 34056213 -83806414 - MIR SINE MIR -3 259 5 205 289 100 0 chr9 34056321 34056411 -83806216 - MIR SINE MIR -48 214 116 2387 90 0 0 chr9 34056811 34057111 -83805516 + AluSg SINE Alu 1 300 -10 744 215 113 20 chr9 34057222 34057417 -83805210 + MER58C DNA MER1_type 3 215 0 401 311 136 31 chr9 34057771 34058329 -83804298 + L2 LINE L2 2545 3163 -109 2290 74 3 17 chr9 34059039 34059336 -83803291 - AluY SINE Alu -18 293 1 190 387 139 6 chr9 34059923 34060096 -83802531 + L2 LINE L2 3076 3271 -1 336 240 0 0 chr9 34060111 34060186 -83802441 + MIR SINE MIR 61 135 -73 350 187 27 0 chr9 34060799 34060874 -83801753 - L1ME2 LINE L1 -21 6143 6067 1766 197 99 111 chr9 34060888 34061801 -83800826 - L1ME2 LINE L1 -537 5627 4705 638 136 0 18 chr9 34061801 34061911 -83800716 - FRAM SINE Alu -1 175 68 1766 197 99 111 chr9 34061911 34062117 -83800510 - L1ME2 LINE L1 -1459 4705 4422 1017 122 0 112 chr9 34062117 34062314 -83800313 - FAM SINE Alu 0 175 1 1766 197 99 111 chr9 34062314 34062380 -83800247 - L1ME2 LINE L1 -1742 4422 4357 1396 192 0 28 chr9 34062438 34062729 -83799898 + SVA Other Other 828 1110 -276 3660 218 88 97 chr9 34063569 34064477 -83798150 - L1ME LINE L1 -537 5561 4646 632 138 0 18 chr9 34064477 34064586 -83798041 - FRAM SINE Alu -2 174 68 3660 218 88 97 chr9 34064586 34064792 -83797835 - L1ME LINE L1 -1452 4646 4440 1017 122 0 112 chr9 34064792 34064989 -83797638 - FAM SINE Alu 0 175 1 3660 218 88 97 chr9 34064989 34065093 -83797534 - L1ME LINE L1 -1658 4440 4337 2227 108 0 0 chr9 34065093 34065398 -83797229 + AluSx SINE Alu 1 305 -7 3660 218 88 97 chr9 34065398 34065579 -83797048 - L1ME LINE L1 -1761 4337 4156 1573 142 105 8 chr9 34065579 34065846 -83796781 - AluJb SINE Alu -19 293 1 3660 218 88 97 chr9 34065846 34066578 -83796049 - L1ME LINE L1 -1942 4156 3340 1055 207 108 30 chr9 34066578 34066861 -83795766 + MER93a LTR ERV1 1 367 -35 2137 121 6 13 chr9 34066861 34067175 -83795452 - AluJb SINE Alu 0 312 1 1055 207 108 30 chr9 34067175 34067214 -83795413 + MER93a LTR ERV1 367 402 0 231 243 27 0 chr9 34067216 34067290 -83795337 - L1 LINE L1 -2739 3341 3266 266 164 73 0 chr9 34067306 34067361 -83795266 - L1 LINE L1 -2896 3250 3192 553 269 89 34 chr9 34067569 34067896 -83794731 - L1ME LINE L1 -4322 1939 1595 374 234 50 44 chr9 34067890 34068154 -83794473 - L1MCc LINE L1 -4888 674 497 * 257 244 61 0 chr9 34068175 34068257 -83794370 - L1MCc LINE L1 -5444 626 540 561 308 66 49 chr9 34068441 34068908 -83793719 - L1MCc LINE L1 -5539 531 57 563 177 7 57 chr9 34069192 34069333 -83793294 + L1PA5 LINE L1 6017 6150 -4 474 277 204 15 chr9 34069376 34069650 -83792977 - L2 LINE L2 0 3313 2988 2054 123 10 27 chr9 34069668 34069969 -83792658 + AluSx SINE Alu 1 296 -16 207 0 0 0 chr9 34070137 34070160 -83792467 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1414 74 268 17 chr9 34070162 34070393 -83792234 - AluY SINE Alu -22 289 1 536 263 253 18 chr9 34070395 34070680 -83791947 - L2 LINE L2 -566 2748 2397 283 237 193 30 chr9 34070688 34070823 -83791804 - L2 LINE L2 -106 3207 3051 284 273 91 0 chr9 34070825 34070913 -83791714 + MLT1H LTR MaLR 250 345 -204 233 346 152 14 chr9 34071104 34071321 -83791306 - L2 LINE L2 -1968 1346 1100 398 250 0 0 chr9 34071324 34071420 -83791207 + MER58 DNA MER1_type 6 101 -114 727 164 0 55 chr9 34071421 34071567 -83791060 + FLAM_C SINE Alu 1 138 -5 276 285 132 14 chr9 34071631 34071775 -83790852 - L2 LINE L2 -2217 1097 937 268 346 51 21 chr9 34072014 34072248 -83790379 + L2 LINE L2 2069 2309 -1005 21 0 0 0 chr9 34072357 34072378 -83790249 + AT_rich Low_complexity Low_complexity 1 21 0 578 220 45 0 chr9 34072379 34072511 -83790116 - MER3 DNA MER1_type -11 198 61 213 343 34 68 chr9 34072542 34072807 -83789820 + L2 LINE L2 2361 2616 -698 885 161 58 0 chr9 34072816 34072971 -83789656 - FRAM SINE Alu -2 174 11 186 333 99 0 chr9 34073110 34073191 -83789436 + L2 LINE L2 3184 3272 0 341 303 149 79 chr9 34075598 34075855 -83786772 - L2 LINE L2 -348 2966 2728 2137 104 7 17 chr9 34075855 34076154 -83786473 + AluSx SINE Alu 1 296 -16 341 303 149 79 chr9 34076154 34076414 -83786213 - L2 LINE L2 -586 2728 2413 277 216 32 112 chr9 34076929 34076985 -83785642 + L2 LINE L2 3199 3241 -72 2187 109 6 13 chr9 34076985 34077296 -83785331 + AluSg SINE Alu 2 310 0 277 216 32 112 chr9 34077296 34077364 -83785263 + L2 LINE L2 3241 3313 0 24 32 0 0 chr9 34078082 34078113 -83784514 + AT_rich Low_complexity Low_complexity 1 31 0 200 184 0 0 chr9 34078821 34078859 -83783768 + CT-rich Low_complexity Low_complexity 2 39 0 588 246 164 14 chr9 34081324 34081531 -83781096 + MIR SINE MIR 7 244 -18 241 211 70 0 chr9 34081813 34081870 -83780757 - L1MB8 LINE L1 -20 6158 6098 300 191 60 36 chr9 34081928 34082012 -83780615 + MIR SINE MIR 177 262 0 2158 115 26 0 chr9 34082318 34082622 -83780005 + AluSq SINE Alu 1 312 -1 279 309 18 95 chr9 34083190 34083358 -83779269 + MIR3 SINE MIR 2 156 -52 21 0 0 0 chr9 34083656 34083677 -83778950 + AT_rich Low_complexity Low_complexity 1 21 0 1030 141 7 0 chr9 34083728 34083902 -83778725 + AluJb SINE Alu 134 308 0 789 134 22 30 chr9 34083925 34084059 -83778568 + FLAM_C SINE Alu 1 133 0 2181 176 82 37 chr9 34084164 34084671 -83777956 + L1MB8 LINE L1 5615 6149 -29 2266 63 0 60 chr9 34084671 34084988 -83777639 - AluY SINE Alu -13 298 1 2181 176 82 37 chr9 34084988 34085020 -83777607 + L1MB8 LINE L1 6149 6178 0 854 146 0 0 chr9 34086087 34086210 -83776417 + FLAM_C SINE Alu 1 123 -20 3866 122 35 61 chr9 34086217 34086350 -83776277 - L1MA7 LINE L1 -18 6273 6138 2007 155 3 3 chr9 34086350 34086660 -83775967 + AluJb SINE Alu 1 310 -2 3866 122 35 61 chr9 34086660 34087231 -83775396 - L1MA7 LINE L1 -153 6138 5587 8581 85 6 3 chr9 34087675 34088820 -83773807 - Tigger1 DNA MER2_type -445 1973 826 1972 180 12 0 chr9 34088819 34089163 -83773464 - Tigger1 DNA MER2_type -2070 348 1 * 2035 107 11 11 chr9 34089206 34089510 -83773117 + AluSx SINE Alu 3 306 0 869 286 143 26 chr9 34090319 34090704 -83771923 - MLT1J2 LTR MaLR 0 450 21 2260 95 16 0 chr9 34092146 34092451 -83770176 - AluSp SINE Alu -3 310 1 1047 255 66 7 chr9 34092747 34093033 -83769594 + L1MEc LINE L1 39 341 -6055 316 284 46 0 chr9 34093067 34093176 -83769451 + L1MEc LINE L1 397 510 -5886 * 547 235 35 6 chr9 34093162 34093332 -83769295 + L1MEc LINE L1 809 983 -5413 7086 77 9 7 chr9 34093340 34094316 -83768311 + L1PA10 LINE L1 5191 6168 0 5285 230 56 36 chr9 34094323 34095412 -83767215 + L1MB1 LINE L1 2955 4089 -2057 724 191 0 52 chr9 34095412 34095548 -83767079 - FLAM_A SINE Alu 0 133 5 5285 230 56 36 chr9 34095548 34096087 -83766540 + L1MB1 LINE L1 4089 4616 -1530 1282 256 50 99 chr9 34096088 34097455 -83765172 + L1MB1 LINE L1 5264 6002 -166 3669 201 24 45 chr9 34096166 34096308 -83766319 + L1ME1 LINE L1 5318 5461 -705 2141 111 3 7 chr9 34096308 34096596 -83766031 - AluSx SINE Alu -25 287 1 3669 201 24 45 chr9 34096596 34096675 -83765952 + L1ME1 LINE L1 5461 5540 -626 2424 89 0 0 chr9 34096675 34096979 -83765648 - AluSx SINE Alu -8 304 1 3669 201 24 45 chr9 34096979 34097623 -83765004 + L1ME1 LINE L1 5540 6166 0 276 324 9 9 chr9 34098109 34098214 -83764413 - L2 LINE L2 0 3272 3168 312 302 22 95 chr9 34098250 34098472 -83764155 - LTR67 LTR ERVL 0 557 352 286 337 22 0 chr9 34098672 34098761 -83763866 - L2 LINE L2 -277 2995 2905 1209 297 41 18 chr9 34098802 34099294 -83763333 - L2 LINE L2 -518 2796 2294 2394 73 7 0 chr9 34099500 34099801 -83762826 + AluY SINE Alu 1 303 -8 344 264 176 6 chr9 34099905 34100064 -83762563 + MIR SINE MIR 67 252 -10 315 271 85 39 chr9 34100871 34101000 -83761627 - MIR SINE MIR -108 154 20 314 288 74 83 chr9 34101001 34101338 -83761289 + L1M2 LINE L1 965 1298 -5551 2259 69 21 3 chr9 34103672 34103961 -83758666 - AluY SINE Alu -17 294 1 264 365 155 13 chr9 34104462 34104772 -83757855 + L3 LINE CR1 1023 1376 -201 221 315 37 46 chr9 34104893 34105001 -83757626 + MIR SINE MIR 5 111 -151 370 214 55 134 chr9 34105007 34105208 -83757419 + MLT1J1 LTR MaLR 254 438 -8 824 153 23 8 chr9 34105604 34105735 -83756892 + FLAM_C SINE Alu 1 133 0 391 207 0 37 chr9 34106746 34106828 -83755799 + MLT1J1 LTR MaLR 106 184 -262 353 279 12 0 chr9 34106905 34106991 -83755636 + MLT1I LTR MaLR 291 377 -32 2239 100 10 19 chr9 34107320 34107631 -83754996 - AluSx SINE Alu -4 308 1 1947 131 3 17 chr9 34107636 34107933 -83754694 - AluSx SINE Alu -10 302 10 2218 101 16 0 chr9 34107944 34108250 -83754377 - AluSq SINE Alu -2 311 1 2501 65 0 0 chr9 34108591 34108884 -83753743 - AluY SINE Alu -18 293 1 201 39 0 0 chr9 34109217 34109243 -83753384 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 206 244 0 0 chr9 34109316 34109361 -83753266 + A-rich Low_complexity Low_complexity 1 45 0 1312 242 208 28 chr9 34109499 34110406 -83752221 + L2 LINE L2 2233 3310 -3 2015 145 0 10 chr9 34111798 34112101 -83750526 - AluSx SINE Alu -12 300 1 210 370 49 29 chr9 34112144 34112390 -83750237 + L2 LINE L2 2417 2667 -647 262 133 22 0 chr9 34113021 34113066 -83749561 - L1MC4a LINE L1 0 7808 7763 4596 200 74 73 chr9 34113070 34113798 -83748829 - L1MC4 LINE L1 -137 7905 7174 1448 157 75 37 chr9 34113798 34114092 -83748535 - AluJo SINE Alu -5 307 3 4596 200 74 73 chr9 34114092 34114797 -83747830 - L1MC4 LINE L1 -868 7174 6471 626 197 8 8 chr9 34114797 34114914 -83747713 + Tigger1 DNA MER2_type 1 117 -2301 345 158 66 40 chr9 34115339 34115415 -83747212 + MER116 DNA Mariner 3 80 0 230 200 44 89 chr9 34115424 34115481 -83747146 - L1ME LINE L1 -361 5760 5707 2211 116 3 0 chr9 34115481 34115782 -83746845 + AluSx SINE Alu 1 302 -10 230 200 44 89 chr9 34115782 34115814 -83746813 - L1ME LINE L1 -414 5707 5675 2148 123 0 3 chr9 34116160 34116462 -83746165 + AluSq SINE Alu 1 301 -12 2157 161 10 36 chr9 34117741 34117820 -83744807 + Tigger1 DNA MER2_type 103 182 -2236 1998 98 44 0 chr9 34117820 34118095 -83744532 - AluSx SINE Alu -25 287 1 2157 161 10 36 chr9 34118095 34118405 -83744222 + Tigger1 DNA MER2_type 182 482 -1936 950 122 0 0 chr9 34118405 34118536 -83744091 + AluSg/x SINE Alu 166 296 -14 4853 112 13 148 chr9 34118536 34119219 -83743408 + Tigger1 DNA MER2_type 1499 2272 -146 2367 90 0 0 chr9 34119219 34119519 -83743108 - AluSg SINE Alu -10 300 1 4853 112 13 148 chr9 34119519 34119682 -83742945 + Tigger1 DNA MER2_type 2272 2455 37 2458 78 0 3 chr9 34119682 34119988 -83742639 - AluSc SINE Alu -4 305 1 1512 220 7 14 chr9 34119990 34120286 -83742341 - AluJo SINE Alu -18 294 1 4853 112 13 148 chr9 34120286 34120498 -83742129 + Tigger1 DNA MER2_type 2179 2418 0 511 290 62 0 chr9 34122453 34122615 -83740012 + MIR SINE MIR 71 242 -20 192 344 67 0 chr9 34123972 34124062 -83738565 - MER5B DNA MER1_type -22 156 61 * 202 204 161 43 chr9 34124017 34124110 -83738517 + MIR SINE MIR 52 155 -107 275 223 96 21 chr9 34124186 34124280 -83738347 + L1MC4a LINE L1 5683 5783 -2025 1293 154 31 7 chr9 34124283 34124686 -83737941 - LTR54 LTR ERV1 -1 509 9 418 275 130 44 chr9 34124698 34125036 -83737591 + L1MC4a LINE L1 5790 6156 -1652 1335 199 122 53 chr9 34125036 34125413 -83737214 + MER57A LTR ERV1 1 403 0 1284 130 61 35 chr9 34125540 34125770 -83736857 - Tigger2a DNA MER2_type -7 437 202 558 144 18 36 chr9 34125762 34125873 -83736754 - Tigger2a DNA MER2_type -324 110 2 * 2531 57 3 0 chr9 34125960 34126258 -83736369 + AluY SINE Alu 1 299 -12 510 279 19 43 chr9 34126413 34126621 -83736006 + L1MC4a LINE L1 6542 6744 -1064 945 174 47 6 chr9 34126621 34126935 -83735692 - Charlie1b DNA MER1_type 0 523 118 1392 154 112 70 chr9 34126964 34127127 -83735500 - MER2 DNA MER2_type 0 345 190 3688 140 60 15 chr9 34127127 34127712 -83734915 - LTR36 LTR ERV1 0 611 1 1392 154 112 70 chr9 34127712 34127789 -83734838 - MER2 DNA MER2_type -155 190 118 1798 209 36 50 chr9 34127789 34128229 -83734398 + MER57B LTR ERV1 1 434 0 1392 154 112 70 chr9 34128229 34128317 -83734310 - MER2 DNA MER2_type -227 118 2 459 244 0 0 chr9 34128318 34128408 -83734219 - Charlie1b DNA MER1_type -433 90 1 1136 145 10 117 chr9 34128408 34128698 -83733929 + L1MC5 LINE L1 6743 7001 -960 3360 178 65 42 chr9 34128698 34129341 -83733286 + MER21B LTR ERV1 1 664 -199 4084 84 9 2 chr9 34129341 34129891 -83732736 + MER41A LTR ERV1 1 554 0 3360 178 65 42 chr9 34129891 34129995 -83732632 + MER21B LTR ERV1 664 764 -99 1054 244 72 36 chr9 34130114 34130614 -83732013 + L1MC5 LINE L1 6998 7515 -446 670 231 67 37 chr9 34130618 34130917 -83731710 + L1MC5 LINE L1 7609 7916 -45 21 0 0 0 chr9 34130917 34130938 -83731689 + AT_rich Low_complexity Low_complexity 1 21 0 545 188 89 0 chr9 34130945 34131046 -83731581 + FLAM_C SINE Alu 1 110 -33 737 265 85 45 chr9 34131290 34131804 -83730823 - LTR38B LTR ERV1 -11 591 31 261 0 0 0 chr9 34132714 34132743 -83729884 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2419 58 7 3 chr9 34133238 34133548 -83729079 + AluY SINE Alu 1 311 0 815 142 8 8 chr9 34134578 34134705 -83727922 + FLAM_C SINE Alu 1 127 -16 3513 121 36 61 chr9 34134709 34134840 -83727787 - L1MA7 LINE L1 -20 6271 6138 2027 155 3 3 chr9 34134840 34135150 -83727477 + AluJb SINE Alu 1 310 -2 3513 121 36 61 chr9 34135150 34135721 -83726906 - L1MA7 LINE L1 -153 6138 5587 7966 85 6 3 chr9 34136165 34137310 -83725317 - Tigger1 DNA MER2_type -445 1973 826 1812 180 12 0 chr9 34137309 34137653 -83724974 - Tigger1 DNA MER2_type -2070 348 1 * 2032 107 11 11 chr9 34137696 34138000 -83724627 + AluSx SINE Alu 3 306 0 740 286 143 26 chr9 34138809 34139194 -83723433 - MLT1J2 LTR MaLR 0 450 21 2255 95 16 0 chr9 34140637 34140942 -83721685 - AluSp SINE Alu -3 310 1 951 255 66 7 chr9 34141238 34141524 -83721103 + L1MEc LINE L1 39 341 -6055 280 284 46 0 chr9 34141558 34141667 -83720960 + L1MEc LINE L1 397 510 -5886 * 484 255 37 5 chr9 34141653 34141841 -83720786 + L1MEc LINE L1 809 1002 -5394 6601 76 9 7 chr9 34141841 34142805 -83719822 + L1PA10 LINE L1 5200 6165 -3 4609 231 55 35 chr9 34142815 34143904 -83718723 + L1MB1 LINE L1 2955 4089 -2057 673 191 0 52 chr9 34143904 34144040 -83718587 - FLAM_A SINE Alu 0 133 5 4609 231 55 35 chr9 34144040 34144579 -83718048 + L1MB1 LINE L1 4089 4616 -1530 1050 258 51 92 chr9 34144580 34145948 -83716679 + L1MB1 LINE L1 5264 6002 -166 3346 201 24 38 chr9 34144658 34144800 -83717827 + L1ME1 LINE L1 5318 5460 -706 2203 111 0 7 chr9 34144800 34145089 -83717538 - AluSx SINE Alu -25 287 1 3346 201 24 38 chr9 34145089 34145162 -83717465 + L1ME1 LINE L1 5460 5533 -633 2455 90 0 0 chr9 34145162 34145472 -83717155 - AluSx SINE Alu -2 310 1 3346 201 24 38 chr9 34145472 34146114 -83716513 + L1ME1 LINE L1 5533 6164 -2 301 333 9 9 chr9 34146602 34146713 -83715914 - L2 LINE L2 0 3272 3162 268 352 16 8 chr9 34146743 34146868 -83715759 - LTR67 LTR ERVL 0 557 432 287 337 22 0 chr9 34147165 34147254 -83715373 - L2 LINE L2 -277 2995 2905 1216 307 35 12 chr9 34147295 34147787 -83714840 - L2 LINE L2 -518 2796 2294 2862 7 0 0 chr9 34147991 34148300 -83714327 + AluY SINE Alu 1 309 -2 6555 121 36 6 chr9 34148384 34150435 -83712192 + L1MA2 LINE L1 4188 6304 0 21 0 0 0 chr9 34150435 34150456 -83712171 + AT_rich Low_complexity Low_complexity 1 21 0 360 325 29 48 chr9 34150703 34150912 -83711715 + MIR SINE MIR 2 206 -56 * 409 362 29 14 chr9 34150883 34151090 -83711537 - L2 LINE L2 -975 2339 2130 252 309 94 40 chr9 34152388 34152537 -83710090 - MIR SINE MIR -101 161 5 230 290 30 20 chr9 34152710 34152810 -83709817 - MIR SINE MIR -13 249 149 298 0 0 0 chr9 34153723 34153759 -83708868 + L1MA5A LINE L1 6041 6076 -221 2459 46 10 3 chr9 34153913 34154220 -83708407 + AluY SINE Alu 1 309 -2 439 317 131 6 chr9 34155074 34155257 -83707370 + MIR SINE MIR 2 207 -55 2005 112 6 3 chr9 34155383 34155696 -83706931 - L1MA5A LINE L1 -6 6291 5978 332 394 80 0 chr9 34155794 34155931 -83706696 - MIR3 SINE MIR -57 151 4 547 230 79 43 chr9 34156021 34156059 -83706568 - MLT1J LTR MaLR -19 492 457 1557 138 120 14 chr9 34156059 34156335 -83706292 + AluSg SINE Alu 1 305 -5 547 230 79 43 chr9 34156335 34156645 -83705982 - MLT1J LTR MaLR -54 457 108 2475 207 28 32 chr9 34156939 34157590 -83705037 + L1MB7 LINE L1 5476 6123 -61 806 173 0 0 chr9 34157590 34157717 -83704910 - FLAM_C SINE Alu -6 127 1 4147 76 2 13 chr9 34158516 34159070 -83703557 - L1PA8A LINE L1 -2 6129 5582 21 0 0 0 chr9 34159075 34159096 -83703531 + AT_rich Low_complexity Low_complexity 1 21 0 482 214 0 0 chr9 34159267 34159370 -83703257 - L1 LINE L1 -3451 2695 2593 * 32084 87 9 54 chr9 34159360 34165803 -83696824 - L1PA4 LINE L1 -1 6154 12 216 0 0 0 chr9 34165850 34165874 -83696753 + (A)n Simple_repeat Simple_repeat 1 24 0 767 268 0 11 chr9 34166283 34166473 -83696154 + AluJo SINE Alu 118 305 -7 365 231 98 10 chr9 34166870 34166994 -83695633 + MIR SINE MIR 50 188 -63 3459 101 38 23 chr9 34167993 34168597 -83694030 - LOR1-int LTR ERV1 -3321 4799 4187 15931 33 1 0 chr9 34168697 34171381 -83691246 + L1PA2 LINE L1 3470 6155 0 420 200 60 43 chr9 34171478 34171663 -83690964 + L1MC/D LINE L1 5260 5447 -2361 38879 35 24 2 chr9 34172143 34177947 -83684680 - L1PA4 LINE L1 -2 6153 218 805 239 54 28 chr9 34178048 34178438 -83684189 - L1MEc LINE L1 -2792 3423 3024 6601 76 20 0 chr9 34178448 34179412 -83683215 - L1PA10 LINE L1 -3 6165 5200 484 255 37 5 chr9 34179412 34179600 -83683027 - L1MEc LINE L1 -5394 1002 809 280 284 46 0 chr9 34179586 34179695 -83682932 - L1MEc LINE L1 -5886 510 397 * 1047 255 66 7 chr9 34179729 34180015 -83682612 - L1MEc LINE L1 -6055 341 39 2294 111 3 0 chr9 34180311 34180618 -83682009 + AluSp SINE Alu 1 308 -5 258 162 0 0 chr9 34180631 34180668 -83681959 + Alu SINE Alu 1 37 -264 * 297 79 0 0 chr9 34180667 34180705 -83681922 + FLAM SINE Alu 86 123 -10 488 188 69 31 chr9 34180728 34180888 -83681739 + MER20B DNA MER1_type 581 746 -37 1720 171 30 13 chr9 34181475 34181774 -83680853 + AluJo SINE Alu 1 304 -8 22 0 0 0 chr9 34181988 34182010 -83680617 + AT_rich Low_complexity Low_complexity 1 22 0 201 293 13 13 chr9 34182192 34182267 -83680360 + GA-rich Low_complexity Low_complexity 2 76 0 26 0 0 0 chr9 34182702 34182728 -83679899 + AT_rich Low_complexity Low_complexity 1 26 0 186 333 0 0 chr9 34182760 34182817 -83679810 + L2 LINE L2 3257 3313 0 233 309 21 21 chr9 34182998 34183092 -83679535 - L2 LINE L2 -12 3301 3208 2255 121 0 0 chr9 34183468 34183773 -83678854 + AluSx SINE Alu 1 305 -7 2338 169 38 116 chr9 34183801 34184267 -83678360 - L1ME LINE L1 -361 5805 5304 1728 172 3 35 chr9 34184267 34184581 -83678046 - AluJo SINE Alu 0 312 9 2338 169 38 116 chr9 34184581 34185234 -83677393 - L1ME LINE L1 -862 5304 4747 24 0 0 0 chr9 34185740 34185764 -83676863 + AT_rich Low_complexity Low_complexity 1 24 0 186 103 0 0 chr9 34185786 34185815 -83676812 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 246 314 20 69 chr9 34185861 34185963 -83676664 - L2 LINE L2 -82 3190 3094 1198 343 136 25 chr9 34186000 34187728 -83674899 + L2 LINE L2 1280 3240 -32 1469 188 34 35 chr9 34187737 34187787 -83674840 - MLT1D LTR MaLR 0 505 456 2029 104 7 0 chr9 34187787 34188056 -83674571 - AluSx SINE Alu -6 306 36 1469 188 34 35 chr9 34188056 34188452 -83674175 - MLT1D LTR MaLR -49 456 1 239 367 45 28 chr9 34188484 34188661 -83673966 - L2 LINE L2 -214 3058 2879 243 257 137 29 chr9 34189070 34189245 -83673382 - L1ME4a LINE L1 -14 6107 5914 530 275 87 106 chr9 34189909 34190276 -83672351 + L2 LINE L2 2903 3262 -10 218 333 125 0 chr9 34190286 34190382 -83672245 - L2 LINE L2 -8 3264 3157 2231 99 10 3 chr9 34190666 34190960 -83671667 - AluSx SINE Alu -16 296 1 2375 53 23 23 chr9 34196712 34197013 -83665614 - AluY SINE Alu -10 301 1 1957 129 7 7 chr9 34197023 34197310 -83665317 - AluSx SINE Alu -25 287 1 814 171 0 23 chr9 34197438 34197567 -83665060 - FLAM_C SINE Alu -7 126 1 1183 255 96 33 chr9 34197568 34198248 -83664379 - L1ME4a LINE L1 -259 5911 5176 995 101 20 7 chr9 34198280 34198429 -83664198 - AluSg/x SINE Alu -1 311 161 2011 254 75 31 chr9 34198496 34199240 -83663387 - L1MC4a LINE L1 -1776 6312 5536 364 315 9 30 chr9 34199307 34199567 -83663060 - L1MC4a LINE L1 -4752 1855 1449 1135 158 0 0 chr9 34199573 34199750 -83662877 - AluSx SINE Alu 0 310 134 625 141 0 0 chr9 34199750 34199835 -83662792 - AluSx SINE Alu -226 86 2 522 290 60 47 chr9 34199907 34200345 -83662282 - L1MCa LINE L1 -4905 1511 906 25 0 0 0 chr9 34200452 34200477 -83662150 + AT_rich Low_complexity Low_complexity 1 25 0 2530 279 61 41 chr9 34201074 34202193 -83660434 - L2 LINE L2 -105 3208 1980 2229 68 10 20 chr9 34202194 34202486 -83660141 + AluY SINE Alu 1 289 -22 522 124 0 0 chr9 34202486 34202575 -83660052 + (GGGGA)n Simple_repeat Simple_repeat 1 89 0 25 31 0 0 chr9 34203111 34203143 -83659484 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr9 34203349 34203370 -83659257 + AT_rich Low_complexity Low_complexity 1 21 0 6626 84 17 0 chr9 34203517 34204679 -83657948 - L1PA14 LINE L1 -1 6160 4981 189 107 0 0 chr9 34204767 34204795 -83657832 + (CAT)n Simple_repeat Simple_repeat 3 30 0 21 0 0 0 chr9 34204884 34204905 -83657722 + AT_rich Low_complexity Low_complexity 1 21 0 434 298 38 42 chr9 34205027 34205195 -83657432 - MIR SINE MIR -63 145 5 1845 115 0 83 chr9 34205309 34205623 -83657004 - AluSx SINE Alu -24 288 1 2408 91 0 0 chr9 34206416 34206724 -83655903 + AluY SINE Alu 1 308 -3 1288 153 115 10 chr9 34206977 34207265 -83655362 - MER33 DNA MER1_type -6 318 1 275 215 62 132 chr9 34207438 34207506 -83655121 + MIR SINE MIR 6 60 -202 2012 103 0 81 chr9 34207506 34207827 -83654800 + AluSg SINE Alu 1 295 -15 275 215 62 132 chr9 34207827 34207902 -83654725 + MIR SINE MIR 60 139 -123 344 339 81 11 chr9 34208337 34208523 -83654104 + MIR SINE MIR 10 208 -54 872 261 33 8 chr9 34209432 34209673 -83652954 + MIR SINE MIR 6 252 -10 548 327 10 35 chr9 34209862 34210064 -83652563 - MIR3 SINE MIR -7 201 5 1425 215 115 40 chr9 34210426 34210898 -83651729 + MLT1F1 LTR MaLR 3 506 -59 207 0 0 0 chr9 34211187 34211210 -83651417 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 10963 137 49 4 chr9 34211544 34213266 -83649361 + L1PA14 LINE L1 1032 2831 -4750 * 17795 176 16 5 chr9 34213255 34217536 -83645091 + L1PA14 LINE L1 3275 7599 0 2164 131 0 0 chr9 34217736 34218033 -83644594 - AluSx SINE Alu -15 297 1 1024 103 12 6 chr9 34218057 34218222 -83644405 + (GGAA)n Simple_repeat Simple_repeat 3 168 0 335 274 33 72 chr9 34218907 34219060 -83643567 + MIR SINE MIR 37 183 -79 * 647 265 114 9 chr9 34219041 34219252 -83643375 - MIR SINE MIR -21 241 9 30 0 0 0 chr9 34219843 34219873 -83642754 + AT_rich Low_complexity Low_complexity 1 30 0 284 253 117 93 chr9 34220084 34220246 -83642381 - MIR3 SINE MIR -10 198 33 378 276 32 65 chr9 34220470 34220577 -83642050 - MIR SINE MIR -70 192 83 2323 126 54 14 chr9 34220577 34220927 -83641700 - THE1B LTR MaLR 0 364 1 12313 82 32 1 chr9 34220927 34222460 -83640167 - THE1B-int LTR MaLR 0 1580 1 2264 104 72 23 chr9 34222460 34222807 -83639820 - THE1B LTR MaLR 0 364 1 378 276 32 65 chr9 34222807 34222882 -83639745 - MIR SINE MIR -176 86 14 214 267 89 10 chr9 34223852 34223953 -83638674 + L2 LINE L2 1904 2012 -1302 1005 272 16 4 chr9 34223991 34224237 -83638390 - MIR SINE MIR -12 250 2 659 156 9 0 chr9 34224263 34224372 -83638255 - MLT1A2 LTR MaLR 0 374 265 775 282 97 0 chr9 34224855 34225114 -83637513 + MLT1H LTR MaLR 266 549 0 1261 147 41 9 chr9 34225673 34225891 -83636736 + AluJo SINE Alu 87 311 -1 597 295 50 30 chr9 34226006 34226206 -83636421 + MIR3 SINE MIR 1 204 -4 2395 144 53 5 chr9 34226532 34226927 -83635700 - MSTA LTR MaLR -14 414 1 478 217 0 62 chr9 34227077 34227206 -83635421 - L2 LINE L2 0 3313 3193 262 288 143 114 chr9 34227422 34227815 -83634812 - L2 LINE L2 -1 3271 2868 449 250 23 93 chr9 34227827 34227958 -83634669 + MER5B DNA MER1_type 13 131 -47 2299 100 0 3 chr9 34227958 34228257 -83634370 + AluSc SINE Alu 1 298 -11 449 250 23 93 chr9 34228257 34228297 -83634330 + MER5B DNA MER1_type 131 172 -6 628 250 58 23 chr9 34228321 34228366 -83634261 - MER5A DNA MER1_type 0 189 147 3709 114 39 4 chr9 34228366 34228899 -83633728 + L1PB3 LINE L1 5596 6147 -7 628 250 58 23 chr9 34228899 34229025 -83633602 - MER5A DNA MER1_type -42 147 12 775 201 63 6 chr9 34229040 34229199 -83633428 + MER5A DNA MER1_type 1 168 -21 1798 93 22 0 chr9 34229341 34229566 -83633061 + MER30 DNA MER1_type 1 230 0 295 234 11 64 chr9 34230108 34230202 -83632425 + MIR3 SINE MIR 68 156 -52 5492 74 15 21 chr9 34230524 34231243 -83631384 + L1PA8 LINE L1 5445 6159 -13 358 284 58 39 chr9 34231299 34231454 -83631173 + Charlie8 DNA MER1_type 1 158 -2259 445 237 7 29 chr9 34233175 34233314 -83629313 + MIR3 SINE MIR 68 203 -5 332 248 61 71 chr9 34233621 34233819 -83628808 + MIR3 SINE MIR 9 204 -4 255 295 93 14 chr9 34234353 34234492 -83628135 + MER5A DNA MER1_type 7 156 -33 2220 103 0 10 chr9 34234667 34234957 -83627670 + AluSx SINE Alu 1 287 -25 198 0 0 0 chr9 34235278 34235300 -83627327 + (T)n Simple_repeat Simple_repeat 1 22 0 2270 112 0 0 chr9 34235575 34235880 -83626747 - AluSx SINE Alu -7 305 1 27 0 0 0 chr9 34236592 34236619 -83626008 + AT_rich Low_complexity Low_complexity 1 27 0 465 336 129 45 chr9 34237654 34238726 -83623901 + L2 LINE L2 863 2024 -1290 206 276 281 5 chr9 34238746 34238956 -83623671 + L2 LINE L2 2222 2489 -825 203 61 30 0 chr9 34241490 34241523 -83621104 + (TC)n Simple_repeat Simple_repeat 2 35 0 351 0 0 0 chr9 34241523 34241562 -83621065 + (CA)n Simple_repeat Simple_repeat 1 39 0 511 285 7 7 chr9 34241852 34241989 -83620638 + MIR SINE MIR 21 157 -105 795 154 32 19 chr9 34242025 34242181 -83620446 + L1MA1 LINE L1 14 171 -7394 * 11677 171 14 14 chr9 34242179 34243430 -83619197 + L1MA1 LINE L1 3200 4449 -3116 2128 103 43 0 chr9 34243430 34243712 -83618915 + AluY SINE Alu 10 303 -8 11677 171 14 14 chr9 34243712 34245127 -83617500 + L1MA1 LINE L1 4449 5867 -1698 40981 62 10 6 chr9 34245138 34251258 -83611369 + L1PA4 LINE L1 11 6153 -2 2092 124 7 0 chr9 34251650 34251932 -83610695 + AluSx SINE Alu 1 284 -28 21 82 0 0 chr9 34252407 34252456 -83610171 + AT_rich Low_complexity Low_complexity 1 49 0 7203 106 20 36 chr9 34252914 34254830 -83607797 + L1MA1 LINE L1 5851 7721 0 5574 86 32 62 chr9 34254934 34255825 -83606802 + SVA Other Other 522 1386 0 2091 25 0 0 chr9 34255985 34256225 -83606402 + L1PA4 LINE L1 5916 6155 0 384 278 45 15 chr9 34257394 34257527 -83605100 + MIR3 SINE MIR 3 139 -69 331 269 151 0 chr9 34259451 34259570 -83603057 + MIR SINE MIR 75 211 -51 559 238 127 79 chr9 34261612 34261927 -83600700 - MLT1K LTR MaLR -50 538 209 309 274 137 16 chr9 34262160 34262284 -83600343 + L2 LINE L2 2920 3058 -214 2172 204 102 11 chr9 34262598 34263118 -83599509 + MLT1F1 LTR MaLR 1 567 0 205 225 0 0 chr9 34265663 34265703 -83596924 + MER5B DNA MER1_type 10 49 -129 289 352 99 0 chr9 34266612 34266774 -83595853 - MIR SINE MIR -11 251 74 316 266 58 50 chr9 34267829 34268070 -83594557 + L2 LINE L2 2864 3106 -166 234 200 40 0 chr9 34268152 34268202 -83594425 + L2 LINE L2 3220 3271 -1 497 274 124 69 chr9 34268958 34269337 -83593290 - MLT1K LTR MaLR -90 498 99 1495 198 22 19 chr9 34269372 34269640 -83592987 + AluJo SINE Alu 1 269 -43 552 104 0 0 chr9 34269642 34269719 -83592908 + MADE1 DNA Mariner 1 77 -3 535 247 63 35 chr9 34270003 34270177 -83592450 - MER20B DNA MER1_type -604 179 1 342 365 122 22 chr9 34270572 34270942 -83591685 + L3 LINE CR1 1067 1473 -104 2429 82 0 32 chr9 34271032 34271373 -83591254 + MER41A LTR ERV1 1 330 -224 43119 37 24 1 chr9 34271373 34277382 -83585245 + L1PA2 LINE L1 4 6155 0 1761 77 25 0 chr9 34277396 34277631 -83584996 + MER41A LTR ERV1 314 554 0 181 158 26 0 chr9 34278982 34279020 -83583607 - L2 LINE L2 -4 3268 3230 183 293 38 115 chr9 34279903 34280060 -83582567 + L2 LINE L2 2915 3059 -213 225 94 0 0 chr9 34280100 34280132 -83582495 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 1216 142 90 5 chr9 34280136 34280347 -83582280 - AluJb SINE Alu -29 283 55 257 303 118 25 chr9 34280414 34280533 -83582094 + L2 LINE L2 3143 3272 0 204 125 0 0 chr9 34281368 34281400 -83581227 + (T)n Simple_repeat Simple_repeat 1 32 0 23 54 0 0 chr9 34281404 34281441 -83581186 + AT_rich Low_complexity Low_complexity 1 37 0 1056 90 0 0 chr9 34281448 34281592 -83581035 - L1PA10 LINE L1 -4 6164 6021 334 56 19 19 chr9 34282950 34283004 -83579623 + (TGGA)n Simple_repeat Simple_repeat 1 54 0 216 255 0 61 chr9 34283758 34283856 -83578771 + GA-rich Low_complexity Low_complexity 4 95 0 377 304 57 18 chr9 34284124 34284469 -83578158 - LTR16C LTR ERVL -47 410 71 276 299 154 0 chr9 34285076 34285193 -83577434 - MIR SINE MIR -75 187 53 202 321 107 8 chr9 34285218 34285349 -83577278 + L2 LINE L2 2926 3069 -203 410 276 0 0 chr9 34285582 34285680 -83576947 - MLT1K LTR MaLR -329 259 162 1032 232 172 76 chr9 34285818 34286306 -83576321 - MLT1G1 LTR MaLR -60 535 1 2028 103 30 30 chr9 34286495 34286796 -83575831 - AluSc SINE Alu -8 301 1 180 191 32 63 chr9 34286796 34286859 -83575768 + MIR SINE MIR 66 126 -136 327 25 0 0 chr9 34287155 34287195 -83575432 + (CA)n Simple_repeat Simple_repeat 2 41 0 2170 113 3 0 chr9 34287458 34287758 -83574869 - AluJb SINE Alu -11 301 1 209 289 0 0 chr9 34288177 34288229 -83574398 + L2 LINE L2 3262 3313 0 184 143 29 0 chr9 34288396 34288431 -83574196 - MIR3 SINE MIR -6 202 167 511 230 33 26 chr9 34288539 34288691 -83573936 + MER103 DNA DNA 4 156 -10 1490 102 0 0 chr9 34289130 34289317 -83573310 - AluSc SINE Alu -17 292 106 869 118 7 22 chr9 34289323 34289458 -83573169 - FLAM_C SINE Alu 0 143 11 350 280 121 40 chr9 34289563 34289861 -83572766 + L1MC/D LINE L1 4533 4854 -1292 3257 146 87 0 chr9 34289953 34290515 -83572112 - MER73 LTR ERVL -32 612 2 317 378 30 0 chr9 34290516 34290680 -83571947 + L1MC/D LINE L1 4978 5146 -1000 43434 37 21 1 chr9 34290693 34296726 -83565901 + L1PA2 LINE L1 1 6155 0 502 200 60 43 chr9 34296823 34297008 -83565619 + L1MC/D LINE L1 5260 5447 -2361 180 0 0 0 chr9 34297167 34297187 -83565440 + (T)n Simple_repeat Simple_repeat 1 20 0 30 0 0 0 chr9 34297233 34297263 -83565364 + AT_rich Low_complexity Low_complexity 1 30 0 182 235 62 49 chr9 34297971 34298052 -83564575 - L2 LINE L2 -326 2946 2865 266 277 61 34 chr9 34299233 34299381 -83563246 - MER117 DNA MER1_type -39 158 7 863 187 23 6 chr9 34299395 34299566 -83563061 - MER20 DNA MER1_type 0 219 46 607 323 39 22 chr9 34300008 34300237 -83562390 - MIR SINE MIR -10 252 20 1026 193 11 11 chr9 34300669 34300856 -83561771 - MER5A DNA MER1_type 0 189 3 1970 142 0 10 chr9 34302585 34302881 -83559746 - AluSx SINE Alu -19 293 1 511 269 159 10 chr9 34302955 34303163 -83559464 - MIR SINE MIR -1 261 23 2533 156 26 22 chr9 34305064 34305558 -83557069 - MER11A LTR ERVK -1 1265 770 1381 61 0 0 chr9 34305554 34305719 -83556908 - MER11B LTR ERVK -1071 165 1 * 3721 140 35 57 chr9 34306224 34306921 -83555706 + L1MA7 LINE L1 5594 6276 -15 1733 126 4 11 chr9 34306921 34307182 -83555445 + AluSx SINE Alu 54 312 0 3721 140 35 57 chr9 34307182 34307198 -83555429 + L1MA7 LINE L1 6276 6291 0 308 364 55 0 chr9 34307822 34307932 -83554695 - MIR SINE MIR -126 136 21 546 290 148 23 chr9 34308798 34309015 -83553612 + MIR SINE MIR 17 260 -2 2545 248 141 48 chr9 34309206 34309359 -83553268 - L1MEc LINE L1 -2196 4019 3882 3048 107 26 22 chr9 34309359 34309816 -83552811 - L1PB1 LINE L1 -3 6148 5690 2545 248 141 48 chr9 34309816 34311363 -83551264 - L1MEc LINE L1 -2333 3882 2106 430 268 71 28 chr9 34311366 34311720 -83550907 - L1MEc LINE L1 -4974 1422 1054 2144 136 0 3 chr9 34312124 34312426 -83550201 + AluSq SINE Alu 1 301 -12 361 171 23 11 chr9 34312445 34312533 -83550094 + A-rich Low_complexity Low_complexity 3 91 0 209 211 26 0 chr9 34312762 34312800 -83549827 + MIR SINE MIR 206 244 -18 * 226 167 93 19 chr9 34312766 34312820 -83549807 + L2 LINE L2 3256 3313 0 2142 118 3 20 chr9 34313506 34313640 -83548987 + AluSx SINE Alu 1 136 -176 2316 92 3 3 chr9 34313640 34313943 -83548684 + AluSp SINE Alu 1 303 -10 2142 118 3 20 chr9 34313943 34314114 -83548513 + AluSx SINE Alu 136 301 -11 456 230 153 37 chr9 34314241 34314440 -83548187 - MLT1K LTR MaLR -248 340 140 235 294 20 59 chr9 34314880 34314982 -83547645 + MIR SINE MIR 31 128 -80 343 357 101 12 chr9 34315475 34315643 -83546984 + MIR3 SINE MIR 16 198 -10 190 363 0 25 chr9 34316115 34316195 -83546432 + L2 LINE L2 2988 3065 -207 1203 272 78 23 chr9 34316223 34316709 -83545918 - LTR33 LTR ERVL -2 519 7 226 284 174 18 chr9 34316806 34316915 -83545712 + L2 LINE L2 3180 3305 -8 4419 100 58 75 chr9 34317106 34317905 -83544722 - LTR1 LTR ERV1 0 785 1 1055 133 66 0 chr9 34317962 34318128 -83544499 + L1PB3 LINE L1 5978 6154 0 559 147 31 54 chr9 34318139 34318268 -83544359 + LTR37A LTR ERV1 46 171 -255 484 242 93 6 chr9 34318540 34318701 -83543926 + L1ME3A LINE L1 4565 4739 -1407 1911 272 64 27 chr9 34318706 34319191 -83543436 + L1ME3A LINE L1 4783 5249 -921 2456 85 0 0 chr9 34319191 34319498 -83543129 - AluY SINE Alu -4 307 1 1911 272 64 27 chr9 34319498 34320139 -83542488 + L1ME3A LINE L1 5249 5951 -219 987 219 105 42 chr9 34320177 34320509 -83542118 - MLT1G LTR MaLR -7 583 156 235 172 31 31 chr9 34320602 34320666 -83541961 - MLT1G LTR MaLR -459 83 20 310 298 2 56 chr9 34320713 34320828 -83541799 + L1ME3A LINE L1 5970 6078 -84 362 236 30 73 chr9 34321000 34321165 -83541462 + L1ME4a LINE L1 5961 6118 -3 786 236 15 26 chr9 34321694 34321889 -83540738 + MIR SINE MIR 56 248 -14 338 276 46 106 chr9 34321952 34322169 -83540458 - MIR SINE MIR -30 232 29 335 154 26 26 chr9 34323599 34323677 -83538950 - MIR3 SINE MIR -6 202 125 569 253 79 62 chr9 34324181 34324486 -83538141 - L1ME4a LINE L1 -238 5883 5574 240 86 35 17 chr9 34324486 34324544 -83538083 + T-rich Low_complexity Low_complexity 2 60 0 248 267 58 12 chr9 34324836 34324922 -83537705 + L1ME4a LINE L1 6000 6089 -32 1016 199 46 32 chr9 34324939 34325038 -83537589 - MER20 DNA MER1_type 0 219 123 2386 122 130 16 chr9 34325038 34325422 -83537205 + MSTA LTR MaLR 1 428 0 1016 199 46 32 chr9 34325422 34325538 -83537089 - MER20 DNA MER1_type -96 123 1 903 265 50 0 chr9 34325607 34325845 -83536782 - MIR SINE MIR 0 262 13 242 188 31 31 chr9 34326133 34326197 -83536430 + CT-rich Low_complexity Low_complexity 3 66 0 227 189 19 0 chr9 34326211 34326264 -83536363 + CT-rich Low_complexity Low_complexity 4 57 0 1247 253 87 9 chr9 34326602 34327048 -83535579 - LTR16C LTR ERVL -8 483 3 328 239 77 51 chr9 34327073 34327190 -83535437 - L2 LINE L2 0 3272 3153 25 51 0 0 chr9 34327291 34327330 -83535297 + AT_rich Low_complexity Low_complexity 1 39 0 270 313 10 20 chr9 34327425 34327524 -83535103 - MIR3 SINE MIR -102 106 9 185 302 0 0 chr9 34327543 34327586 -83535041 + L2 LINE L2 3208 3250 -22 2417 192 27 10 chr9 34327642 34328121 -83534506 - L1MB7 LINE L1 -153 6267 5781 21 57 0 0 chr9 34328121 34328156 -83534471 + AT_rich Low_complexity Low_complexity 1 35 0 1194 163 0 0 chr9 34329644 34329847 -83532780 - L1MA3 LINE L1 0 6305 6103 478 229 69 0 chr9 34329859 34330003 -83532624 - L1ME3A LINE L1 -10 6160 6007 1143 163 79 40 chr9 34330895 34331172 -83531455 + L1MA8 LINE L1 6003 6290 -1 903 196 43 0 chr9 34331476 34331639 -83530988 + AluJb SINE Alu 130 299 -13 354 204 29 0 chr9 34331639 34331742 -83530885 + GA-rich Low_complexity Low_complexity 1 106 0 205 67 33 0 chr9 34331742 34331772 -83530855 + (GAAAA)n Simple_repeat Simple_repeat 5 35 0 2264 92 0 0 chr9 34331781 34332254 -83530373 + AluY SINE Alu 1 311 0 918 143 12 119 chr9 34332254 34332389 -83530238 + L1MA4 LINE L1 3447 3549 -2597 3684 142 29 11 chr9 34332389 34333016 -83529611 + L1MA4 LINE L1 5662 6299 -1 918 143 12 119 chr9 34333016 34333115 -83529512 + L1MA4 LINE L1 3549 3657 -2489 * 10302 208 86 55 chr9 34333109 34334740 -83527887 - L1MB7 LINE L1 -931 5451 3871 755 177 24 8 chr9 34334740 34334864 -83527763 - AluJo SINE Alu -173 139 14 10302 208 86 55 chr9 34334864 34335358 -83527269 - L1MB7 LINE L1 -2511 3871 3394 1397 147 92 55 chr9 34335358 34335660 -83526967 - AluJb SINE Alu 0 312 1 10302 208 86 55 chr9 34335660 34337577 -83525050 - L1MB7 LINE L1 -2988 3394 1128 902 187 0 7 chr9 34337607 34337757 -83524870 + FAM SINE Alu 10 158 -27 1462 163 74 131 chr9 34337897 34338332 -83524295 + MLT2D LTR ERVL 5 414 0 1259 122 15 24 chr9 34338713 34338951 -83523676 - AluSq SINE Alu 0 337 102 713 215 139 0 chr9 34339002 34339146 -83523481 - FAM SINE Alu -11 164 1 195 288 0 45 chr9 34339211 34339277 -83523350 + L2 LINE L2 3250 3312 -1 358 109 0 0 chr9 34339277 34339323 -83523304 - THE1A LTR MaLR 0 355 310 1250 148 0 0 chr9 34339427 34339610 -83523017 + AluSg/x SINE Alu 122 304 -8 498 304 30 30 chr9 34339809 34340145 -83522482 - L1M4 LINE L1 -1315 4831 4496 1961 141 7 0 chr9 34341264 34341547 -83521080 - AluSx SINE Alu -27 285 1 596 289 101 31 chr9 34341651 34341879 -83520748 + MLT1I LTR MaLR 166 409 0 385 284 73 9 chr9 34341893 34342002 -83520625 + L2 LINE L2 3193 3308 -5 289 284 0 12 chr9 34342013 34342094 -83520533 + MIR3 SINE MIR 128 207 -1 305 366 36 0 chr9 34342655 34342767 -83519860 - MIR3 SINE MIR -7 201 86 212 311 16 49 chr9 34342792 34342914 -83519713 - L2 LINE L2 -780 2534 2417 714 116 9 0 chr9 34342914 34343026 -83519601 + Ricksha DNA DNA 2 114 -1932 517 321 58 49 chr9 34343028 34343374 -83519253 - L2 LINE L2 -975 2339 1991 321 307 113 41 chr9 34343791 34344153 -83518474 + L2 LINE L2 2440 2827 -487 579 251 80 27 chr9 34344227 34344414 -83518213 - MIR SINE MIR -13 249 53 208 261 7 7 chr9 34345801 34345943 -83516684 + GA-rich Low_complexity Low_complexity 1 142 0 307 291 24 63 chr9 34348415 34348542 -83514085 + MIR3 SINE MIR 83 204 -4 242 239 26 94 chr9 34350207 34350324 -83512303 - L1ME4a LINE L1 -72 6049 5941 1985 119 7 18 chr9 34351718 34352030 -83510597 - AluSx SINE Alu 0 309 1 242 328 74 67 chr9 34352162 34352461 -83510166 + L2 LINE L2 2922 3222 -50 21 0 0 0 chr9 34353504 34353525 -83509102 + AT_rich Low_complexity Low_complexity 1 21 0 5500 148 57 10 chr9 34353982 34354151 -83508476 + L1MA7 LINE L1 5082 5242 -1049 2552 113 16 19 chr9 34354151 34354514 -83508113 - THE1B LTR MaLR 0 364 3 5500 148 57 10 chr9 34354514 34355500 -83507127 + L1MA7 LINE L1 5242 6291 0 1371 205 59 62 chr9 34355518 34355908 -83506719 + MSTD LTR MaLR 8 396 0 505 209 11 0 chr9 34356466 34356557 -83506070 - MER5A DNA MER1_type 0 189 98 737 215 139 0 chr9 34356623 34356767 -83505860 - FAM SINE Alu -11 164 1 2285 121 75 26 chr9 34356898 34357245 -83505382 - THE1B LTR MaLR 0 364 1 12933 84 4 0 chr9 34357245 34358819 -83503808 - THE1B-int LTR MaLR 0 1580 1 2316 116 78 20 chr9 34358819 34359163 -83503464 - THE1B LTR MaLR 0 364 1 1004 118 0 0 chr9 34360351 34360486 -83502141 + FLAM_C SINE Alu 2 136 -7 3511 150 51 8 chr9 34360495 34361103 -83501524 + L1MA4 LINE L1 5661 6294 -6 39 0 0 0 chr9 34361103 34361142 -83501485 + AT_rich Low_complexity Low_complexity 1 39 0 1988 155 0 3 chr9 34361157 34361460 -83501167 - AluJb SINE Alu -10 302 1 1023 183 44 28 chr9 34361594 34361811 -83500816 - L1MC4 LINE L1 -811 7231 7008 312 28 0 0 chr9 34361811 34361847 -83500780 - L1MA9 LINE L1 0 6312 6277 1023 183 44 28 chr9 34361847 34361880 -83500747 - L1MC4 LINE L1 -1034 7008 6977 476 241 48 7 chr9 34361881 34362026 -83500601 - L1MC4 LINE L1 -997 7045 6895 2749 214 74 14 chr9 34362029 34362630 -83499997 + L1MC4 LINE L1 7281 7932 -110 1677 207 125 3 chr9 34362630 34362983 -83499644 + MSTD LTR MaLR 1 396 0 2749 214 74 14 chr9 34362983 34363086 -83499541 + L1MC4 LINE L1 7932 8027 -15 1576 271 88 11 chr9 34363248 34363702 -83498925 - LTR16C LTR ERVL 0 491 3 1860 157 45 33 chr9 34363789 34364120 -83498507 - MER1B DNA MER1_type 0 337 3 8802 158 62 21 chr9 34364801 34366393 -83496234 + L1MC1 LINE L1 29 1555 -4871 1508 205 34 3 chr9 34366393 34366690 -83495937 + AluJo SINE Alu 1 306 -6 8802 158 62 21 chr9 34366690 34366708 -83495919 + L1MC1 LINE L1 1555 1571 -4855 615 27 0 0 chr9 34366708 34366781 -83495846 + (GGAA)n Simple_repeat Simple_repeat 4 76 0 8802 158 62 21 chr9 34366781 34367611 -83495016 + L1MC1 LINE L1 1571 2366 -4060 1340 218 56 68 chr9 34367611 34367965 -83494662 + MLT1B LTR MaLR 1 351 -39 1445 211 10 22 chr9 34367965 34368277 -83494350 - AluJo SINE Alu -4 308 1 1340 218 56 68 chr9 34368277 34368317 -83494310 + MLT1B LTR MaLR 351 390 0 8802 158 62 21 chr9 34368317 34369198 -83493429 + L1MC1 LINE L1 2366 3576 -2850 7939 181 32 36 chr9 34369565 34371588 -83491039 + L1MC1 LINE L1 3532 5569 -1044 2113 112 0 4 chr9 34371588 34371866 -83490761 + AluSc SINE Alu 1 277 -32 7939 181 32 36 chr9 34371866 34372905 -83489722 + L1MC1 LINE L1 5569 6611 -2 207 69 0 0 chr9 34373067 34373096 -83489531 + (TG)n Simple_repeat Simple_repeat 2 30 0 2228 110 0 10 chr9 34373657 34373957 -83488670 + AluSq SINE Alu 1 297 -16 228 74 0 0 chr9 34374047 34374074 -83488553 - L1PB3 LINE L1 -65 6089 6063 2154 130 7 0 chr9 34374075 34374383 -83488244 + AluSx SINE Alu 3 312 0 2798 173 122 58 chr9 34375787 34375969 -83486658 + LTR48 LTR ERV1 1 170 -617 1942 84 4 0 chr9 34375969 34376219 -83486408 + L1PA14 LINE L1 5894 6144 -17 2798 173 122 58 chr9 34376219 34376234 -83486393 + LTR48 LTR ERV1 170 183 -604 2130 132 3 0 chr9 34376234 34376545 -83486082 + AluSx SINE Alu 1 312 0 2798 173 122 58 chr9 34376545 34377086 -83485541 + LTR48 LTR ERV1 183 787 0 2325 78 3 0 chr9 34377381 34377677 -83484950 + AluSg SINE Alu 1 297 -13 218 333 0 0 chr9 34377678 34377738 -83484889 + MIR SINE MIR 181 240 -22 182 217 181 0 chr9 34380168 34380251 -83482376 - MIR SINE MIR -66 142 45 635 66 0 0 chr9 34380843 34380919 -83481708 - FLAM_A SINE Alu -33 109 34 2308 84 3 17 chr9 34381695 34381992 -83480635 - AluSg SINE Alu -17 293 1 316 178 22 78 chr9 34381996 34382086 -83480541 + MER113 DNA MER1_type? 38 122 -399 * 376 261 68 34 chr9 34382073 34382249 -83480378 + MER113 DNA MER1_type? 296 477 -44 767 100 0 0 chr9 34382252 34382352 -83480275 + HY1 scRNA scRNA 1 100 -12 194 31 0 62 chr9 34382355 34382387 -83480240 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 470 321 24 19 chr9 34383294 34383503 -83479124 - MIR SINE MIR 0 262 53 2047 164 105 48 chr9 34383890 34384367 -83478260 + MER67D LTR ERV1 6 509 -5 2155 203 45 91 chr9 34384743 34385324 -83477303 + MLT2B3 LTR ERVL 1 554 0 3930 162 55 9 chr9 34385642 34386284 -83476343 + LTR51 LTR ERV1 1 671 0 2627 210 48 6 chr9 34386414 34386933 -83475694 + MER87 LTR ERV1 1 541 0 222 333 111 0 chr9 34387076 34387175 -83475452 - MIR SINE MIR -17 245 136 321 305 139 51 chr9 34387391 34387843 -83474784 - L2 LINE L2 -891 2423 1932 790 265 56 5 chr9 34387931 34388146 -83474481 - MIR SINE MIR 0 262 37 245 292 39 31 chr9 34388397 34388527 -83474100 - L2 LINE L2 -4 3268 3138 1055 99 21 0 chr9 34388767 34388909 -83473718 + L1PB3 LINE L1 6008 6152 -2 24 32 0 0 chr9 34388909 34388940 -83473687 + AT_rich Low_complexity Low_complexity 1 31 0 1297 219 182 25 chr9 34388968 34389370 -83473257 + MER4C LTR ERV1 1 465 0 288 301 0 0 chr9 34389473 34389556 -83473071 - L2 LINE L2 -513 2801 2719 183 276 152 0 chr9 34390177 34390282 -83472345 - L2 LINE L2 -2405 909 789 936 193 155 98 chr9 34390359 34390461 -83472166 + MER34 LTR ERV1 1 96 -446 2508 52 7 3 chr9 34390461 34390771 -83471856 + AluY SINE Alu 1 311 0 936 193 155 98 chr9 34390771 34391166 -83471461 + MER34 LTR ERV1 96 526 -16 277 284 23 23 chr9 34391847 34391935 -83470692 + MIR SINE MIR 172 259 -3 372 43 0 0 chr9 34391936 34391982 -83470645 + (TTA)n Simple_repeat Simple_repeat 3 48 0 747 314 107 25 chr9 34392883 34393511 -83469116 - L2 LINE L2 -650 2664 1986 821 112 17 9 chr9 34393515 34393631 -83468996 + AluSq/x SINE Alu 2 118 -195 484 223 80 46 chr9 34394123 34394298 -83468329 + Charlie8 DNA MER1_type 96 276 -2141 239 240 90 30 chr9 34394380 34394480 -83468147 - L2 LINE L2 -23 3290 3185 195 42 0 0 chr9 34395410 34395434 -83467193 + (TCCC)n Simple_repeat Simple_repeat 3 26 0 696 243 115 35 chr9 34395454 34395680 -83466947 + MIR SINE MIR 4 247 -15 1830 216 42 12 chr9 34395966 34396444 -83466183 - L1ME1 LINE L1 -7 6159 5672 723 191 65 94 chr9 34396807 34396836 -83465791 + L1ME3 LINE L1 5893 5921 -241 2591 144 65 0 chr9 34396836 34397238 -83465389 + MSTC LTR MaLR 1 428 0 723 191 65 94 chr9 34397238 34397485 -83465142 + L1ME3 LINE L1 5921 6161 -1 183 234 0 64 chr9 34397545 34397592 -83465035 + L2 LINE L2 3254 3297 -16 2014 147 0 0 chr9 34397599 34397891 -83464736 + AluSx SINE Alu 6 297 -15 201 244 0 0 chr9 34399821 34399862 -83462765 + (CA)n Simple_repeat Simple_repeat 1 41 0 1537 251 54 68 chr9 34400814 34401482 -83461145 + MER77 LTR ERV1 54 671 -6 834 225 122 0 chr9 34401716 34401938 -83460689 - MIR SINE MIR -3 259 11 231 284 12 49 chr9 34401977 34402058 -83460569 - L2 LINE L2 -791 2523 2446 306 312 177 21 chr9 34402116 34402257 -83460370 + MIR3 SINE MIR 14 176 -32 719 272 73 32 chr9 34402277 34402523 -83460104 + MIR SINE MIR 7 262 0 24 32 0 0 chr9 34402607 34402638 -83459989 + AT_rich Low_complexity Low_complexity 1 31 0 311 252 55 79 chr9 34403581 34403708 -83458919 + L2 LINE L2 3149 3272 0 1279 209 7 7 chr9 34404857 34405130 -83457497 - AluJo SINE Alu 0 312 40 207 194 0 0 chr9 34405297 34405333 -83457294 + MIR SINE MIR 111 146 -116 337 247 0 13 chr9 34407011 34407088 -83455539 - L2 LINE L2 -9 3304 3229 2411 128 11 40 chr9 34407761 34408136 -83454491 - THE1B LTR MaLR 0 364 1 323 280 295 10 chr9 34408470 34408670 -83453957 - MIR SINE MIR -4 258 2 2007 147 0 3 chr9 34408690 34408989 -83453638 - AluSg SINE Alu -10 300 3 534 289 158 11 chr9 34409083 34409356 -83453271 - L2 LINE L2 -1251 2063 1751 899 182 6 38 chr9 34409402 34409561 -83453066 + FRAM SINE Alu 1 154 -12 26 0 0 0 chr9 34409561 34409587 -83453040 + AT_rich Low_complexity Low_complexity 1 26 0 411 335 150 10 chr9 34409614 34409814 -83452813 - MIR SINE MIR -10 252 25 3285 275 113 36 chr9 34409943 34411486 -83451141 + L2 LINE L2 1628 3313 0 221 298 50 66 chr9 34411474 34411595 -83451032 - L2 LINE L2 -1718 1596 1478 * 2084 124 0 0 chr9 34411954 34412272 -83450355 - AluSx SINE Alu 0 318 1 939 162 0 14 chr9 34412316 34412464 -83450163 - AluJo SINE Alu -166 146 1 273 316 46 11 chr9 34412493 34412667 -83449960 - L2 LINE L2 -1193 2121 1942 625 250 17 17 chr9 34412784 34412956 -83449671 + MER5B DNA MER1_type 1 172 -6 2133 120 45 48 chr9 34413139 34413515 -83449112 - THE1C LTR MaLR 0 375 1 618 294 60 24 chr9 34413633 34413885 -83448742 - MIR SINE MIR 0 262 2 21 0 0 0 chr9 34415158 34415179 -83447448 + AT_rich Low_complexity Low_complexity 1 21 0 1743 186 0 10 chr9 34415187 34415498 -83447129 + AluJb SINE Alu 1 308 -4 200 329 7 103 chr9 34415498 34415596 -83447031 - MIR3 SINE MIR -74 134 53 1647 174 0 0 chr9 34415596 34415860 -83446767 + AluJo SINE Alu 37 300 -12 200 329 7 103 chr9 34415860 34415907 -83446720 - MIR3 SINE MIR -155 53 3 279 245 61 71 chr9 34416138 34416334 -83446293 + L2 LINE L2 2126 2319 -995 413 283 158 11 chr9 34416752 34416936 -83445691 - L2 LINE L2 0 3313 3103 * 1161 269 55 36 chr9 34416908 34417377 -83445250 - L2 LINE L2 -2235 1079 602 214 273 76 0 chr9 34417403 34417469 -83445158 + MIR3 SINE MIR 111 181 -27 292 42 0 42 chr9 34418309 34418357 -83444270 + (TTTC)n Simple_repeat Simple_repeat 2 47 0 2159 124 3 10 chr9 34418363 34418677 -83443950 - AluSq SINE Alu -1 312 1 1187 195 0 14 chr9 34418748 34418969 -83443658 + AluJb SINE Alu 82 299 -13 215 191 16 0 chr9 34419538 34419601 -83443026 + (TA)n Simple_repeat Simple_repeat 2 65 0 2517 60 0 0 chr9 34420045 34420343 -83442284 + AluY SINE Alu 1 298 -13 212 0 0 35 chr9 34420346 34420375 -83442252 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 2298 106 0 10 chr9 34420806 34421118 -83441509 - AluSx SINE Alu -3 309 1 869 200 108 44 chr9 34421177 34421427 -83441200 - L1ME3A LINE L1 0 6170 5905 335 132 19 0 chr9 34421501 34421554 -83441073 + MER92B LTR ERV1 1 54 -582 4931 114 7 8 chr9 34421847 34422569 -83440058 - HERVL-B3 LTR ERVL -4933 721 1 1195 192 46 29 chr9 34422569 34422943 -83439684 - MLT2B3 LTR ERVL 0 554 175 497 251 217 0 chr9 34423514 34423689 -83438938 + MIR SINE MIR 47 259 -3 191 283 0 0 chr9 34423864 34423910 -83438717 + MIR SINE MIR 206 251 -11 2190 125 0 0 chr9 34424575 34424870 -83437757 + AluSq SINE Alu 1 295 -18 286 291 13 73 chr9 34424892 34425043 -83437584 - L1MC5 LINE L1 -95 7866 7725 244 215 354 0 chr9 34425083 34425162 -83437465 + MER91C DNA MER1_type 34 140 0 1266 164 4 61 chr9 34425182 34425413 -83437214 - MER58A DNA MER1_type -1 223 6 260 211 13 40 chr9 34425893 34425969 -83436658 + GA-rich Low_complexity Low_complexity 3 76 0 501 163 0 0 chr9 34426393 34426479 -83436148 + L1M2 LINE L1 5413 5498 -799 287 303 62 91 chr9 34426495 34426703 -83435924 + L2 LINE L2 3027 3228 -44 395 324 58 43 chr9 34427424 34427631 -83434996 - MIR SINE MIR -51 211 2 401 250 71 0 chr9 34429650 34429790 -83432837 + MER117 DNA MER1_type 1 150 -47 499 350 153 14 chr9 34429817 34430183 -83432444 + L3 LINE CR1 813 1229 -348 730 155 16 16 chr9 34430652 34430781 -83431846 + L1MB4 LINE L1 6052 6180 0 709 207 7 22 chr9 34430790 34430925 -83431702 + FLAM_C SINE Alu 1 133 0 493 339 14 32 chr9 34430936 34431154 -83431473 + MIR SINE MIR 1 214 -48 303 276 31 0 chr9 34431187 34431285 -83431342 + L3 LINE CR1 1316 1416 -161 215 302 62 120 chr9 34431945 34432106 -83430521 + L2 LINE L2 3041 3185 -87 720 173 47 0 chr9 34432106 34432233 -83430394 - FLAM_C SINE Alu 0 133 1 215 302 62 120 chr9 34432233 34432313 -83430314 + L2 LINE L2 3185 3268 -4 308 346 118 7 chr9 34432439 34432592 -83430035 - MIR SINE MIR -73 189 20 816 127 42 0 chr9 34432916 34433034 -83429593 + FLAM_C SINE Alu 1 123 -10 23 0 0 0 chr9 34433034 34433057 -83429570 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr9 34433453 34433477 -83429150 + AT_rich Low_complexity Low_complexity 1 24 0 934 137 8 0 chr9 34433486 34433617 -83429010 - FLAM_C SINE Alu -1 132 1 240 35 0 0 chr9 34433879 34433908 -83428719 + (CA)n Simple_repeat Simple_repeat 2 30 0 558 259 78 35 chr9 34434758 34434990 -83427637 + MIR SINE MIR 19 260 -2 739 275 17 30 chr9 34435518 34435751 -83426876 - MIR SINE MIR -31 231 2 661 202 228 54 chr9 34435841 34436386 -83426241 + LTR50 LTR ERVL 6 784 -11 338 195 29 12 chr9 34436404 34436488 -83426139 - MIR3 SINE MIR -45 163 73 362 347 42 6 chr9 34436593 34436760 -83425867 - MIR SINE MIR -87 175 3 230 245 23 0 chr9 34437729 34437843 -83424784 - L2 LINE L2 -5 3308 3214 288 283 106 18 chr9 34437965 34438078 -83424549 + MIR SINE MIR 19 141 -67 2443 90 3 0 chr9 34438233 34438545 -83424082 + AluSp SINE Alu 1 313 0 435 312 133 14 chr9 34438705 34438984 -83423643 - L3 LINE CR1 -3 1574 1263 236 153 306 47 chr9 34439659 34439744 -83422883 - MIR SINE MIR 0 262 156 379 241 65 37 chr9 34439973 34440081 -83422546 - MIR SINE MIR -59 149 39 279 270 101 0 chr9 34440425 34440514 -83422113 + MER113 DNA MER1_type? 3 100 -421 2131 116 0 7 chr9 34440522 34440823 -83421804 - AluSq SINE Alu -14 299 1 252 272 65 22 chr9 34440988 34441080 -83421547 - L3 LINE CR1 -58 1519 1424 243 61 0 0 chr9 34441172 34441205 -83421422 + (T)n Simple_repeat Simple_repeat 1 33 0 506 271 117 14 chr9 34441221 34441433 -83421194 + MIR SINE MIR 19 251 -11 2185 103 0 3 chr9 34441853 34442139 -83420488 + AluSx SINE Alu 1 286 -22 423 0 0 0 chr9 34442139 34442186 -83420441 + (CATA)n Simple_repeat Simple_repeat 2 48 0 225 0 0 0 chr9 34442942 34442967 -83419660 + (A)n Simple_repeat Simple_repeat 1 25 0 2017 140 7 0 chr9 34443333 34443625 -83419002 - AluJo SINE Alu -14 298 5 679 191 70 0 chr9 34443661 34443776 -83418851 - FLAM_C SINE Alu -18 125 3 2851 130 23 2 chr9 34443954 34444385 -83418242 + MER44D DNA MER2_type 3 497 -108 479 170 138 0 chr9 34444492 34444586 -83418041 + MER44D DNA MER2_type 499 605 0 411 299 39 16 chr9 34445294 34445421 -83417206 + MIR SINE MIR 84 213 -49 435 199 26 0 chr9 34445427 34445532 -83417095 + MIR3 SINE MIR 69 177 -31 400 309 49 10 chr9 34446657 34446840 -83415787 - MIR SINE MIR -65 143 3 389 273 25 0 chr9 34446921 34447042 -83415585 - L3 LINE CR1 -252 1325 1202 24 32 0 0 chr9 34447226 34447257 -83415370 + AT_rich Low_complexity Low_complexity 1 31 0 248 222 333 19 chr9 34448886 34448994 -83413633 - L2 LINE L2 -8 3264 3123 189 270 16 16 chr9 34449639 34449702 -83412925 - L3b LINE CR1 -214 1369 1307 260 264 0 0 chr9 34450585 34450638 -83411989 + (TG)n Simple_repeat Simple_repeat 1 53 0 329 248 108 25 chr9 34450729 34450886 -83411741 + L1ME4a LINE L1 5935 6104 -17 499 245 123 0 chr9 34452771 34452926 -83409701 - MER117 DNA MER1_type -22 175 2 417 177 0 0 chr9 34454298 34454377 -83408250 + (TA)n Simple_repeat Simple_repeat 2 80 0 293 200 0 0 chr9 34454382 34454442 -83408185 - L1MC4 LINE L1 -1339 6703 6644 1377 198 8 30 chr9 34454454 34454722 -83407905 + AluJo SINE Alu 5 266 -46 420 193 0 72 chr9 34454724 34454807 -83407820 + AluJo/FRAM SINE Alu 208 284 -28 634 248 149 72 chr9 34454829 34455458 -83407169 - Charlie7 DNA MER1_type -3 2609 1932 1445 153 27 8 chr9 34455459 34455901 -83406726 + L1PA16 LINE L1 4598 5030 -1136 1471 209 7 16 chr9 34455901 34456208 -83406419 + AluJo SINE Alu 6 309 -3 1445 153 27 8 chr9 34456208 34457122 -83405505 + L1PA16 LINE L1 5030 6158 -8 228 35 0 0 chr9 34457122 34457151 -83405476 + (CATA)n Simple_repeat Simple_repeat 2 30 0 1966 197 154 33 chr9 34457180 34457502 -83405125 - Charlie7 DNA MER1_type -653 1959 1677 6825 91 17 8 chr9 34457502 34459231 -83403396 - L1PA15 LINE L1 -6 6159 4405 1966 197 154 33 chr9 34459231 34459572 -83403055 - Charlie7 DNA MER1_type -935 1677 1216 2614 61 0 0 chr9 34459626 34459937 -83402690 + AluY SINE Alu 1 311 0 265 111 32 79 chr9 34460483 34460546 -83402081 - MER52-int LTR ERV1 -887 6204 6145 246 304 80 0 chr9 34462471 34462596 -83400031 + L1ME4a LINE L1 5691 5825 -296 200 333 24 0 chr9 34463274 34463442 -83399185 + (CATATA)n Simple_repeat Simple_repeat 3 174 0 2264 113 3 0 chr9 34463508 34463819 -83398808 + AluSx SINE Alu 1 312 0 203 156 0 0 chr9 34464062 34464094 -83398533 + (TAGA)n Simple_repeat Simple_repeat 1 32 0 4987 161 35 15 chr9 34464217 34465027 -83397600 + LTR1B LTR ERV1 1 826 0 328 248 40 10 chr9 34465090 34465191 -83397436 + L1ME4a LINE L1 6018 6121 0 2223 174 18 8 chr9 34465776 34466162 -83396465 - MLT1B LTR MaLR 0 390 1 209 344 0 16 chr9 34467280 34467344 -83395283 - L2 LINE L2 -13 3300 3238 1914 183 14 6 chr9 34468089 34468438 -83394189 + Tigger6b DNA MER2_type 1 352 -731 1547 152 4 4 chr9 34468430 34468693 -83393934 + Tigger6b DNA MER2_type 377 639 -958 * 4255 151 172 22 chr9 34468693 34469598 -83393029 - pTR5 LTR ERV1 -11 2427 175 1247 214 48 7 chr9 34469598 34469887 -83392740 + Tigger6b DNA MER2_type 626 926 -671 903 188 17 0 chr9 34469886 34470062 -83392565 + Tigger6b DNA MER2_type 1076 1254 -343 * 933 175 52 47 chr9 34470063 34470274 -83392353 + L1MB8 LINE L1 5822 6033 -145 766 266 44 50 chr9 34470623 34470984 -83391643 + L1M4 LINE L1 3223 3581 -2565 1707 158 7 4 chr9 34471103 34471375 -83391252 + AluJo SINE Alu 1 273 -39 22 0 0 0 chr9 34471426 34471448 -83391179 + AT_rich Low_complexity Low_complexity 1 22 0 3259 32 3 0 chr9 34471915 34472334 -83390293 + L1PA3 LINE L1 5756 6175 0 892 159 0 0 chr9 34472979 34473111 -83389516 + AluSq/x SINE Alu 1 132 -181 2216 107 0 3 chr9 34473113 34473402 -83389225 + AluSx SINE Alu 1 288 -24 198 0 0 0 chr9 34473406 34473428 -83389199 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 371 127 0 0 chr9 34473449 34473504 -83389123 + Alu SINE Alu 243 297 -3 264 130 0 0 chr9 34473561 34473607 -83389020 + (CA)n Simple_repeat Simple_repeat 2 47 0 346 332 84 16 chr9 34474168 34474358 -83388269 + L2 LINE L2 2544 2746 -568 333 325 53 35 chr9 34474373 34474542 -83388085 + MER5A DNA MER1_type 15 186 -3 839 155 36 27 chr9 34474997 34475138 -83387489 - MLT2B1 LTR ERVL -56 456 318 675 99 0 0 chr9 34475138 34475239 -83387388 + (CA)n Simple_repeat Simple_repeat 2 102 0 839 155 36 27 chr9 34475239 34475267 -83387360 - MLT2B1 LTR ERVL -194 318 172 1579 277 55 57 chr9 34475407 34475532 -83387095 + L2 LINE L2 2207 2331 -983 1803 179 0 13 chr9 34475532 34475839 -83386788 - AluJb SINE Alu -9 303 1 1579 277 55 57 chr9 34475839 34476481 -83386146 + L2 LINE L2 2331 2972 -342 299 246 0 0 chr9 34476493 34476562 -83386065 - L2 LINE L2 -929 2385 2317 929 136 7 26 chr9 34476567 34476721 -83385906 + AluJb SINE Alu 1 151 -161 510 272 211 4 chr9 34476724 34476989 -83385638 + L2 LINE L2 2994 3313 0 547 243 168 9 chr9 34479128 34479342 -83383285 - MIR SINE MIR -14 248 1 353 144 58 23 chr9 34479835 34480008 -83382619 + (CA)n Simple_repeat Simple_repeat 1 179 0 189 0 0 0 chr9 34480206 34480227 -83382400 + (A)n Simple_repeat Simple_repeat 1 21 0 1397 143 63 0 chr9 34480681 34480919 -83381708 + L1MD3 LINE L1 7730 7982 -13 1239 177 116 14 chr9 34481024 34481301 -83381326 + MER61A LTR ERV1 1 305 -38 1810 122 0 19 chr9 34481404 34481577 -83381050 - AluSx SINE Alu -7 305 137 2202 98 3 32 chr9 34481577 34481892 -83380735 - AluSx SINE Alu -6 306 1 1810 122 0 19 chr9 34481892 34481980 -83380647 - AluSx SINE Alu -175 137 49 2758 131 21 59 chr9 34481980 34482243 -83380384 + MER6A DNA MER2_type 113 384 -481 2455 84 3 0 chr9 34482243 34482552 -83380075 - AluSg SINE Alu 0 310 1 2758 131 21 59 chr9 34482552 34482724 -83379903 + MER6A DNA MER2_type 384 529 -336 4509 141 0 6 chr9 34482724 34483403 -83379224 + L1PA16 LINE L1 5488 6162 -4 2758 131 21 59 chr9 34483403 34483478 -83379149 + MER6A DNA MER2_type 529 605 0 1743 139 18 0 chr9 34483549 34483823 -83378804 + L1MB2 LINE L1 5703 5981 -202 3781 162 51 23 chr9 34483824 34484569 -83378058 - LTR1B LTR ERV1 0 785 1 1071 126 55 11 chr9 34484569 34484751 -83377876 + L1MB2 LINE L1 5979 6168 -3 280 227 52 65 chr9 34484873 34484942 -83377685 - L1ME4a LINE L1 -4 6117 6049 2361 115 0 0 chr9 34484942 34485254 -83377373 + AluSx SINE Alu 1 312 0 280 227 52 65 chr9 34485254 34485338 -83377289 - L1ME4a LINE L1 -72 6049 5966 2175 111 7 3 chr9 34485433 34485713 -83376914 + AluSq SINE Alu 1 284 -29 193 40 0 0 chr9 34485713 34485738 -83376889 + (CAA)n Simple_repeat Simple_repeat 1 180 0 2175 111 7 3 chr9 34485738 34485755 -83376872 + AluSq SINE Alu 284 299 -14 218 347 0 32 chr9 34485759 34485854 -83376773 - MIR3 SINE MIR -7 201 110 422 254 25 33 chr9 34485961 34486083 -83376544 + MIR SINE MIR 2 122 -140 1493 226 93 64 chr9 34486293 34486916 -83375711 - MER50 LTR ERV1 -84 650 10 921 142 36 91 chr9 34488037 34488280 -83374347 + L1MD3 LINE L1 6208 6344 0 189 0 0 0 chr9 34488755 34488776 -83373851 + (A)n Simple_repeat Simple_repeat 1 21 0 2202 88 0 39 chr9 34489647 34489782 -83372845 + AluSp SINE Alu 1 140 -173 2749 32 0 0 chr9 34489782 34490093 -83372534 + AluY SINE Alu 1 311 0 2202 88 0 39 chr9 34490093 34490262 -83372365 + AluSp SINE Alu 140 293 -20 893 159 8 0 chr9 34490382 34490514 -83372113 - FLAM_C SINE Alu 0 133 1 336 291 68 35 chr9 34491612 34491980 -83370647 + HAL1b LINE L1 69 448 -900 2093 120 3 3 chr9 34492251 34492543 -83370084 - AluJb SINE Alu -20 292 1 1892 157 20 81 chr9 34492874 34493098 -83369529 - MLT1A2 LTR MaLR -3 371 179 2141 90 4 4 chr9 34493098 34493404 -83369223 - AluSx SINE Alu 0 311 6 1892 157 20 81 chr9 34493404 34493573 -83369054 - MLT1A2 LTR MaLR -195 179 1 1034 181 0 81 chr9 34494545 34494766 -83367861 + AluJo SINE Alu 85 287 -25 390 321 65 48 chr9 34495271 34495688 -83366939 + L1M4 LINE L1 4067 4490 -1656 670 215 112 22 chr9 34496167 34496390 -83366237 - MLT1J1 LTR MaLR -146 300 58 2005 129 0 0 chr9 34496898 34497177 -83365450 + AluJb SINE Alu 23 301 -11 382 142 46 3 chr9 34497344 34497562 -83365065 + AluJb SINE Alu 1 297 -5 586 221 16 25 chr9 34497884 34498006 -83364621 + FLAM_A SINE Alu 1 121 -12 22 0 0 0 chr9 34498008 34498030 -83364597 + AT_rich Low_complexity Low_complexity 1 22 0 227 306 51 20 chr9 34498672 34498770 -83363857 - MLT1H LTR MaLR -14 535 435 477 297 78 14 chr9 34498855 34499074 -83363553 - MLT1H LTR MaLR -290 259 27 198 71 0 0 chr9 34499609 34499637 -83362990 + (TG)n Simple_repeat Simple_repeat 2 29 0 2431 113 26 37 chr9 34499763 34500142 -83362485 - THE1C LTR MaLR 0 375 1 230 244 35 23 chr9 34500246 34500332 -83362295 + LTR67 LTR ERVL 458 544 -13 333 0 0 0 chr9 34500731 34500768 -83361859 + (CA)n Simple_repeat Simple_repeat 2 38 0 301 258 33 77 chr9 34500810 34500961 -83361666 + L1M4 LINE L1 4532 4675 -1471 2092 109 34 0 chr9 34500961 34501255 -83361372 - AluSg SINE Alu -6 304 1 301 258 33 77 chr9 34501255 34501285 -83361342 + L1M4 LINE L1 4675 4705 -1441 714 163 41 24 chr9 34502044 34502167 -83360460 + FLAM_A SINE Alu 3 127 -6 299 268 92 49 chr9 34502168 34502474 -83360153 + L1M4 LINE L1 4737 5055 -1091 17314 51 7 0 chr9 34502693 34505512 -83357115 + L1PA6 LINE L1 3316 6144 -10 347 185 25 0 chr9 34505514 34505595 -83357032 + (TATATG)n Simple_repeat Simple_repeat 6 88 0 241 174 0 0 chr9 34505595 34505641 -83356986 - LTR66 LTR ERVL -171 439 394 1191 144 0 0 chr9 34505641 34505814 -83356813 + AluSq SINE Alu 127 299 -14 752 199 53 66 chr9 34505966 34506249 -83356378 + L1M4 LINE L1 4890 5166 -980 846 158 0 0 chr9 34506432 34506559 -83356068 + FRAM SINE Alu 44 170 -6 28 61 0 0 chr9 34506744 34506793 -83355834 + AT_rich Low_complexity Low_complexity 1 49 0 1846 140 13 36 chr9 34506793 34507100 -83355527 - AluJb SINE Alu -12 300 1 916 135 15 15 chr9 34507327 34507460 -83355167 + FLAM_C SINE Alu 1 133 0 344 268 73 0 chr9 34507950 34508073 -83354554 + L1M4 LINE L1 3794 3925 -2221 21 36 0 0 chr9 34508334 34508362 -83354265 + AT_rich Low_complexity Low_complexity 1 28 0 483 18 0 0 chr9 34508863 34508919 -83353708 + (CA)n Simple_repeat Simple_repeat 2 57 0 2050 117 0 36 chr9 34509566 34509875 -83352752 - AluSx SINE Alu -14 298 1 21 36 0 0 chr9 34510392 34510420 -83352207 + AT_rich Low_complexity Low_complexity 1 28 0 197 339 55 18 chr9 34510578 34510687 -83351940 - L2 LINE L2 -2 3270 3158 27 0 0 0 chr9 34511408 34511435 -83351192 + AT_rich Low_complexity Low_complexity 1 27 0 1223 114 0 0 chr9 34511435 34511593 -83351034 + AluSq SINE Alu 1 158 -155 203 331 66 33 chr9 34512437 34512455 -83350172 + MER5A DNA MER1_type 1 22 -167 304 318 69 23 chr9 34512455 34512628 -83349999 - MER5A DNA MER1_type -2 187 7 780 220 140 9 chr9 34512731 34512945 -83349682 - MIR SINE MIR -12 250 9 2548 64 0 13 chr9 34512951 34513262 -83349365 - AluY SINE Alu -2 309 3 331 272 29 44 chr9 34513761 34513897 -83348730 + MIR SINE MIR 128 261 -1 747 315 63 47 chr9 34516273 34516873 -83345754 - L2 LINE L2 0 3313 2702 2115 125 13 3 chr9 34516977 34517282 -83345345 + AluSx SINE Alu 3 310 -2 2209 72 4 4 chr9 34517669 34517946 -83344681 + L1PA6 LINE L1 5878 6154 0 1483 192 17 23 chr9 34518762 34519064 -83343563 + AluJo SINE Alu 3 302 0 2200 132 0 0 chr9 34519106 34519409 -83343218 + AluSx SINE Alu 3 305 -7 2941 145 63 10 chr9 34519591 34520095 -83342532 - MER39 LTR ERV1 -86 621 91 240 333 75 0 chr9 34520114 34520234 -83342393 + MIR SINE MIR 110 238 -24 3375 106 0 19 chr9 34520593 34521063 -83341564 - L1PA15 LINE L1 -12 6153 5693 679 277 229 24 chr9 34522095 34522423 -83340204 - L2 LINE L2 -582 2732 2338 5392 199 71 45 chr9 34522430 34522971 -83339656 + L1MC4a LINE L1 6104 6630 -1178 183 80 0 0 chr9 34522971 34522996 -83339631 + (TG)n Simple_repeat Simple_repeat 1 25 0 5392 199 71 45 chr9 34522996 34523964 -83338663 + L1MC4a LINE L1 6630 7652 -156 26 0 0 0 chr9 34524411 34524437 -83338190 + AT_rich Low_complexity Low_complexity 1 26 0 1337 151 46 5 chr9 34524489 34524707 -83337920 - AluJo SINE Alu -1 311 85 1279 220 48 36 chr9 34524715 34525089 -83337538 + L1ME2 LINE L1 5795 6164 0 2043 119 27 70 chr9 34525212 34525583 -83337044 + L1MB3 LINE L1 5822 6176 -7 516 303 108 13 chr9 34526438 34526669 -83335958 - MIR SINE MIR -6 256 4 2414 69 0 3 chr9 34526882 34527170 -83335457 - AluSp SINE Alu -5 308 22 276 53 0 0 chr9 34527588 34527626 -83335001 + (A)n Simple_repeat Simple_repeat 1 38 0 1870 107 68 11 chr9 34527772 34528052 -83334575 - AluSx SINE Alu -16 296 1 2246 100 7 0 chr9 34528057 34528356 -83334271 - AluSp SINE Alu -12 301 1 2190 115 0 16 chr9 34528357 34528669 -83333958 - AluSx SINE Alu -5 307 1 1561 112 0 30 chr9 34530036 34530269 -83332358 + AluJb SINE Alu 85 310 -2 477 274 78 17 chr9 34531534 34531713 -83330914 + MIR SINE MIR 68 257 -5 2162 109 0 0 chr9 34531716 34532028 -83330599 - AluSx SINE Alu 0 312 1 323 330 16 113 chr9 34532042 34532351 -83330276 - L2 LINE L2 -33 3239 2961 297 240 41 107 chr9 34532418 34532476 -83330151 - MER91B DNA MER1_type -60 130 83 2300 105 3 0 chr9 34532476 34532781 -83329846 - AluSp SINE Alu -7 306 1 297 240 41 107 chr9 34532781 34532843 -83329784 - MER91B DNA MER1_type -107 83 18 1983 135 17 0 chr9 34533059 34533348 -83329279 + AluSg SINE Alu 3 296 -14 291 405 33 8 chr9 34534969 34535090 -83327537 + L2 LINE L2 3145 3268 -4 2354 94 7 0 chr9 34535275 34535574 -83327053 - AluSx SINE Alu -11 301 1 728 205 146 6 chr9 34535695 34535866 -83326761 + MER3 DNA MER1_type 2 196 -13 1503 138 17 0 chr9 34536053 34536284 -83326343 + Tigger1 DNA MER2_type 3 237 -2181 5757 118 38 8 chr9 34536289 34537161 -83325466 + Tigger1 DNA MER2_type 997 1894 -524 2566 53 0 3 chr9 34537161 34537464 -83325163 + AluY SINE Alu 1 302 -9 1909 124 79 16 chr9 34537464 34537779 -83324848 + Tigger1 DNA MER2_type 2084 2418 0 1537 155 34 10 chr9 34537834 34538125 -83324502 - AluJo SINE Alu -14 298 1 512 279 234 5 chr9 34538450 34538651 -83323976 - MIR SINE MIR -11 251 5 204 336 81 27 chr9 34538697 34538777 -83323850 - L2 LINE L2 -32 3281 3207 767 183 16 0 chr9 34538777 34538903 -83323724 + FLAM_A SINE Alu 1 128 -5 204 336 81 27 chr9 34538903 34538971 -83323656 - L2 LINE L2 -106 3207 3125 253 326 188 0 chr9 34539487 34539631 -83322996 - L2 LINE L2 -635 2679 2509 479 322 75 17 chr9 34539631 34539870 -83322757 - L2 LINE L2 -911 2403 2151 288 239 11 68 chr9 34539876 34539964 -83322663 + L1ME3A LINE L1 6027 6109 -61 3834 45 8 6 chr9 34539965 34540435 -83322192 + L1PA7 LINE L1 5682 6152 -2 277 254 0 0 chr9 34540582 34540641 -83321986 + L2 LINE L2 3191 3249 -64 362 321 111 39 chr9 34540690 34540970 -83321657 - L2 LINE L2 -1317 1997 1698 2190 45 69 3 chr9 34541249 34541537 -83321090 + AluY SINE Alu 1 307 -4 855 293 60 0 chr9 34541585 34541817 -83320810 + MIR SINE MIR 1 246 -16 2094 87 7 3 chr9 34541900 34542188 -83320439 + AluSx SINE Alu 1 289 -23 536 278 60 91 chr9 34543822 34544569 -83318058 - L1M4 LINE L1 -1711 4435 3712 4181 158 68 28 chr9 34544578 34545361 -83317266 - MER21B LTR ERV1 -7 856 43 574 193 9 18 chr9 34545372 34545486 -83317141 + L2 LINE L2 3198 3310 -3 248 0 31 0 chr9 34545595 34545627 -83317000 + (TTG)n Simple_repeat Simple_repeat 2 34 0 2082 102 7 3 chr9 34545629 34545924 -83316703 - AluSx SINE Alu -16 296 1 484 225 210 22 chr9 34545971 34546109 -83316518 + MER5A DNA MER1_type 26 189 0 1085 293 68 93 chr9 34546123 34546351 -83316276 - L1M4 LINE L1 -2569 3577 3345 1795 148 24 10 chr9 34546351 34546648 -83315979 - AluJo SINE Alu -11 301 1 1085 293 68 93 chr9 34546648 34546697 -83315930 - L1M4 LINE L1 -2801 3345 3296 3612 179 40 56 chr9 34546697 34547681 -83314946 + LTR5 LTR ERVK 2 969 0 1085 293 68 93 chr9 34547681 34547806 -83314821 - L1M4 LINE L1 -2850 3296 3169 2239 85 10 0 chr9 34547806 34548101 -83314526 - AluSg SINE Alu -12 298 1 1085 293 68 93 chr9 34548101 34548501 -83314126 - L1M4 LINE L1 -2977 3169 2760 2547 128 43 31 chr9 34548501 34548544 -83314083 - MSTA LTR MaLR 0 428 387 2073 80 3 65 chr9 34548544 34548869 -83313758 + AluSq SINE Alu 1 305 -8 2547 128 43 31 chr9 34548869 34549248 -83313379 - MSTA LTR MaLR -41 387 1 1085 293 68 93 chr9 34549248 34549297 -83313330 - L1M4 LINE L1 -3386 2760 2746 1581 178 0 53 chr9 34549297 34549618 -83313009 + AluJo SINE Alu 1 304 -8 1085 293 68 93 chr9 34549618 34549694 -83312933 - L1M4 LINE L1 -3400 2746 2670 3457 161 7 2 chr9 34549826 34550378 -83312249 - MER41D LTR ERV1 -2 555 1 24 0 0 0 chr9 34550774 34550798 -83311829 + AT_rich Low_complexity Low_complexity 1 24 0 424 307 129 0 chr9 34551673 34551836 -83310791 - MIR SINE MIR -1 261 78 10339 124 15 22 chr9 34554180 34555807 -83306820 + L1P LINE L1 11 1625 -4521 1756 143 84 53 chr9 34555925 34556247 -83306380 + MER1B DNA MER1_type 4 335 -2 471 278 91 78 chr9 34556408 34556717 -83305910 + MLT1J LTR MaLR 3 315 -196 1463 106 0 0 chr9 34556851 34557049 -83305578 - AluSq SINE Alu -8 305 108 882 90 0 0 chr9 34557064 34557175 -83305452 + AluSq/x SINE Alu 12 122 -190 515 199 106 0 chr9 34557178 34557329 -83305298 - MER20B DNA MER1_type -30 753 587 196 230 18 124 chr9 34557920 34558033 -83304594 - L2 LINE L2 -592 2722 2622 1995 116 7 3 chr9 34558034 34558318 -83304309 + AluSx SINE Alu 1 285 -27 25 0 0 0 chr9 34558318 34558343 -83304284 + AT_rich Low_complexity Low_complexity 1 25 0 2779 49 0 6 chr9 34558445 34558791 -83303836 + LTR14A LTR ERVK 1 344 0 403 230 0 0 chr9 34559285 34559359 -83303268 - L2 LINE L2 -1 3312 3239 21 0 0 0 chr9 34559434 34559455 -83303172 + AT_rich Low_complexity Low_complexity 1 21 0 1534 186 17 3 chr9 34559517 34559812 -83302815 - AluJo SINE Alu -13 299 1 2814 138 40 0 chr9 34559832 34560303 -83302324 - L1MA8 LINE L1 -5 6286 5797 480 61 0 0 chr9 34560304 34560370 -83302257 - MER2 DNA MER2_type -159 186 121 806 150 0 8 chr9 34560371 34560504 -83302123 + AluJb SINE Alu 1 132 -180 833 181 0 8 chr9 34560504 34560637 -83301990 - MER2 DNA MER2_type -213 132 1 1672 138 3 0 chr9 34560640 34560929 -83301698 - L1MA8 LINE L1 -771 5375 5086 1589 159 29 7 chr9 34560930 34561206 -83301421 + AluJo SINE Alu 1 282 -30 180 0 0 0 chr9 34561209 34561229 -83301398 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2302 60 3 7 chr9 34561399 34561700 -83300927 - AluSp SINE Alu -13 300 1 2836 129 29 21 chr9 34562850 34563331 -83299296 + MER31A LTR ERV1 1 485 0 4207 158 61 54 chr9 34563915 34563952 -83298675 - L1MB3 LINE L1 -118 6065 6030 1430 111 202 8 chr9 34563952 34564195 -83298432 + AluSg SINE Alu 1 290 -20 4207 158 61 54 chr9 34564195 34564541 -83298086 - L1MB3 LINE L1 -153 6030 5688 2969 123 7 7 chr9 34564541 34564979 -83297648 + L1PB3 LINE L1 5708 6147 -7 4207 158 61 54 chr9 34564979 34565184 -83297443 - L1MB3 LINE L1 -495 5688 5486 2182 87 0 29 chr9 34565184 34565493 -83297134 - AluSg SINE Alu -10 300 1 4207 158 61 54 chr9 34565493 34565978 -83296649 - L1MB3 LINE L1 -697 5486 4987 1906 148 10 6 chr9 34565978 34566289 -83296338 - AluJo SINE Alu 0 312 1 4207 158 61 54 chr9 34566289 34566609 -83296018 - L1MB3 LINE L1 -1196 4987 4671 234 0 0 0 chr9 34566621 34566647 -83295980 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 738 171 7 29 chr9 34566696 34566836 -83295791 + FLAM_C SINE Alu 2 138 -5 445 177 242 81 chr9 34566843 34567029 -83295598 + MER102a DNA MER1_type 115 330 0 266 33 0 0 chr9 34567201 34567231 -83295396 - MLT2D LTR ERVL 0 414 385 2469 68 0 0 chr9 34567274 34567583 -83295044 + AluY SINE Alu 1 309 -2 470 322 72 66 chr9 34567593 34568051 -83294576 - L2 LINE L2 -261 3052 2578 963 248 32 8 chr9 34568347 34568593 -83294034 + LTR16C LTR ERVL 236 487 -4 33 25 0 0 chr9 34568765 34568805 -83293822 + AT_rich Low_complexity Low_complexity 1 40 0 818 153 0 23 chr9 34568964 34569095 -83293532 - FLAM_C SINE Alu -4 129 2 2271 82 0 0 chr9 34569107 34569400 -83293227 - AluSx SINE Alu -12 300 8 337 250 125 91 chr9 34570007 34570069 -83292558 + L2 LINE L2 2636 2694 -620 1548 189 0 26 chr9 34570069 34570371 -83292256 + AluJo SINE Alu 18 311 -1 337 250 125 91 chr9 34570371 34570572 -83292055 + L2 LINE L2 2694 2908 -406 762 225 156 36 chr9 34570901 34570994 -83291633 - L2 LINE L2 0 3313 3233 2281 85 3 0 chr9 34570994 34571289 -83291338 + AluSq SINE Alu 2 297 -16 762 225 156 36 chr9 34571289 34571415 -83291212 - L2 LINE L2 -80 3233 3124 2099 123 0 3 chr9 34571415 34571717 -83290910 + AluSx SINE Alu 1 301 -11 762 225 156 36 chr9 34571717 34571803 -83290824 - L2 LINE L2 -189 3124 2970 315 293 24 49 chr9 34571793 34571844 -83290783 - L2 LINE L2 -546 2768 2717 * 2316 68 3 0 chr9 34571844 34572140 -83290487 - AluSg SINE Alu -13 297 1 315 293 24 49 chr9 34572140 34572211 -83290416 - L2 LINE L2 -597 2717 2649 387 282 94 0 chr9 34572233 34572350 -83290277 - L2 LINE L2 0 3272 3145 750 276 160 48 chr9 34572900 34573380 -83289247 + MLT1G1 LTR MaLR 1 595 0 410 323 30 8 chr9 34573508 34573641 -83288986 + L2 LINE L2 3134 3269 -3 824 238 168 5 chr9 34573705 34573919 -83288708 - MIR SINE MIR -2 260 12 2239 74 10 3 chr9 34574080 34574378 -83288249 + AluY SINE Alu 1 300 -11 360 222 9 74 chr9 34575194 34575302 -83287325 - L2 LINE L2 -3 3269 3169 2266 91 3 0 chr9 34575915 34576213 -83286414 - AluSg SINE Alu -11 299 1 211 310 14 14 chr9 34576647 34576718 -83285909 - L3 LINE CR1 -11 1566 1496 313 339 27 0 chr9 34577387 34577499 -83285128 + L2 LINE L2 3150 3264 -8 * 403 232 40 10 chr9 34577477 34577576 -83285051 - L2 LINE L2 -4 3309 3208 1140 220 90 43 chr9 34577596 34577834 -83284793 - MER21B LTR ERV1 -54 809 583 1662 179 123 0 chr9 34577834 34578159 -83284468 - MLT1A1 LTR MaLR 0 365 1 1140 220 90 43 chr9 34578159 34578488 -83284139 - MER21B LTR ERV1 -280 583 148 359 235 15 0 chr9 34578589 34578657 -83283970 - MER21B LTR ERV1 -773 90 22 1963 118 9 19 chr9 34578658 34578973 -83283654 - AluSx SINE Alu 0 312 1 1351 87 11 0 chr9 34579535 34579720 -83282907 + AluSq SINE Alu 117 303 -10 1944 115 3 3 chr9 34579732 34580019 -83282608 + AluSg SINE Alu 3 289 -21 1812 162 44 3 chr9 34580024 34580364 -83282263 + L1MC3 LINE L1 7432 7785 0 23 0 0 0 chr9 34580468 34580491 -83282136 + AT_rich Low_complexity Low_complexity 1 23 0 24 85 0 0 chr9 34580503 34580562 -83282065 + AT_rich Low_complexity Low_complexity 1 59 0 201 307 130 59 chr9 34581359 34581613 -83281014 + L2 LINE L2 2360 2631 -683 241 258 0 16 chr9 34581685 34581747 -83280880 + MIR SINE MIR 168 228 -34 2239 76 7 3 chr9 34581980 34582281 -83280346 + AluSp SINE Alu 1 302 -11 355 213 12 88 chr9 34582361 34582521 -83280106 + L1MC/D LINE L1 4465 4612 -1534 786 163 23 0 chr9 34582674 34582803 -83279824 + FLAM_C SINE Alu 2 133 -10 717 189 15 15 chr9 34582978 34583110 -83279517 + FLAM_A SINE Alu 2 133 0 495 266 225 15 chr9 34583390 34583785 -83278842 + L1MC/D LINE L1 5313 5790 -2018 1565 163 46 0 chr9 34583972 34584255 -83278372 - AluJb SINE Alu -10 302 7 253 302 7 86 chr9 34584294 34584354 -83278273 + L2 LINE L2 3136 3199 -73 1918 110 7 20 chr9 34584354 34584655 -83277972 - AluSx SINE Alu -15 297 1 253 302 7 86 chr9 34584655 34584733 -83277894 + L2 LINE L2 3199 3263 -9 196 356 194 25 chr9 34584997 34585275 -83277352 + L2 LINE L2 2830 3154 -118 685 192 15 0 chr9 34585314 34585444 -83277183 - AluSq/x SINE Alu -180 133 2 276 100 0 25 chr9 34587849 34587889 -83274738 + U2 snRNA snRNA 1 39 -149 2231 101 3 22 chr9 34588272 34588590 -83274037 - AluSp SINE Alu -1 312 1 1989 99 17 10 chr9 34588705 34588999 -83273628 + AluSq SINE Alu 1 296 -17 1327 99 0 11 chr9 34589001 34589183 -83273444 + AluSg/x SINE Alu 126 305 -5 736 213 109 11 chr9 34590244 34590418 -83272209 - MER3 DNA MER1_type -17 192 2 186 173 77 19 chr9 34590781 34590833 -83271794 + MIR SINE MIR 84 138 -124 216 0 0 0 chr9 34591133 34591157 -83271470 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2201 89 3 10 chr9 34592354 34592647 -83269980 - AluSq SINE Alu -22 291 1 2019 141 13 10 chr9 34592677 34592981 -83269646 - AluSx SINE Alu -7 305 1 770 176 101 70 chr9 34593633 34593832 -83268795 + MER6B DNA MER2_type 2 206 -4 475 271 81 27 chr9 34593962 34594220 -83268407 + L1MC5 LINE L1 7642 7913 -48 1484 149 69 29 chr9 34594672 34594947 -83267680 + AluJb SINE Alu 4 289 -23 25 31 0 0 chr9 34594955 34594987 -83267640 + AT_rich Low_complexity Low_complexity 1 32 0 348 315 24 39 chr9 34595182 34595309 -83267318 - MIR SINE MIR -131 131 7 344 130 19 0 chr9 34596121 34596175 -83266452 + FLAM_A SINE Alu 14 68 -64 607 202 105 0 chr9 34596175 34596289 -83266338 + AluJo/FRAM SINE Alu 156 281 -31 21 0 0 0 chr9 34596289 34596310 -83266317 + AT_rich Low_complexity Low_complexity 1 21 0 1508 126 146 0 chr9 34596376 34596622 -83266005 + AluSq SINE Alu 11 292 -21 2201 114 3 0 chr9 34596712 34597019 -83265608 - AluSq SINE Alu -5 308 1 1891 123 4 4 chr9 34597233 34597494 -83265133 - AluSx SINE Alu -51 261 1 887 125 0 28 chr9 34598439 34598583 -83264044 + FLAM_C SINE Alu 1 140 -3 1982 156 0 0 chr9 34598662 34598951 -83263676 + AluJb SINE Alu 13 301 -11 1928 122 36 33 chr9 34599249 34599553 -83263074 - AluSx SINE Alu -7 305 1 204 40 0 0 chr9 34600787 34600812 -83261815 + (TA)n Simple_repeat Simple_repeat 2 26 0 1941 120 23 32 chr9 34601650 34601959 -83260668 + AluSx SINE Alu 1 306 -6 1797 178 159 70 chr9 34602021 34602222 -83260405 + L1MB4 LINE L1 5406 5588 -592 1349 182 134 19 chr9 34602222 34602529 -83260098 - MER2 DNA MER2_type -1 343 2 1797 178 159 70 chr9 34602529 34602556 -83260071 + L1MB4 LINE L1 5588 5611 -569 2253 108 7 0 chr9 34602556 34602861 -83259766 + AluSq SINE Alu 1 307 -6 1797 178 159 70 chr9 34602861 34603343 -83259284 + L1MB4 LINE L1 5611 6180 0 556 14 116 0 chr9 34603377 34603446 -83259181 + MADE1 DNA Mariner 4 80 0 605 160 208 7 chr9 34603834 34603978 -83258649 - MER5B DNA MER1_type -3 175 3 2234 100 3 0 chr9 34604084 34604383 -83258244 - AluSg SINE Alu -10 300 1 357 150 33 0 chr9 34604679 34604739 -83257888 - MER5A DNA MER1_type -60 129 68 189 0 0 0 chr9 34605243 34605264 -83257363 + (A)n Simple_repeat Simple_repeat 1 21 0 2250 111 0 0 chr9 34606813 34607111 -83255516 + AluSx SINE Alu 1 298 -14 189 0 0 0 chr9 34607834 34607855 -83254772 + (A)n Simple_repeat Simple_repeat 1 21 0 2303 87 3 10 chr9 34607859 34608158 -83254469 + AluSx SINE Alu 1 297 -15 2077 112 0 14 chr9 34608826 34609136 -83253491 + AluSx SINE Alu 1 306 0 346 173 68 0 chr9 34609138 34609207 -83253420 + MLT1J2 LTR MaLR 366 440 -6 675 172 0 63 chr9 34609947 34610099 -83252528 + L1MD2 LINE L1 5855 5998 -173 5587 178 60 16 chr9 34610104 34610902 -83251725 + L1MC1 LINE L1 4362 5123 -1210 1742 171 55 0 chr9 34610902 34611018 -83251609 + AluJo SINE Alu 1 109 -203 216 0 0 0 chr9 34611018 34611042 -83251585 + (CA)n Simple_repeat Simple_repeat 1 24 0 1742 171 55 0 chr9 34611042 34611218 -83251409 + AluJo SINE Alu 109 309 -3 5587 178 60 16 chr9 34611218 34611799 -83250828 + L1MC1 LINE L1 5123 5677 -656 2170 103 0 0 chr9 34611799 34612090 -83250537 + AluSg SINE Alu 1 291 -19 2841 13 0 0 chr9 34612093 34612401 -83250226 + AluY SINE Alu 1 308 -3 5587 178 60 16 chr9 34612401 34612905 -83249722 + L1MC1 LINE L1 5678 6333 0 1168 207 55 114 chr9 34612893 34613026 -83249601 + L1MD2 LINE L1 5930 6069 -290 * 1988 65 146 0 chr9 34613026 34613287 -83249340 + AluSp SINE Alu 1 299 -4 1168 207 55 114 chr9 34613287 34613608 -83249019 + L1MD2 LINE L1 6069 6357 -2 1222 216 76 30 chr9 34614710 34615039 -83247588 + MER2 DNA MER2_type 1 344 0 823 165 0 0 chr9 34615256 34615383 -83247244 + FLAM_C SINE Alu 1 127 -16 668 187 14 72 chr9 34615430 34615569 -83247058 - FLAM_A SINE Alu -2 131 1 355 282 73 9 chr9 34615587 34615697 -83246930 - MER5B DNA MER1_type -61 117 1 181 317 0 33 chr9 34615943 34616003 -83246624 + L2 LINE L2 3238 3295 -18 192 125 0 0 chr9 34616407 34616439 -83246188 + (TA)n Simple_repeat Simple_repeat 2 33 0 900 189 0 0 chr9 34616447 34616595 -83246032 - FRAM SINE Alu -29 147 1 264 286 134 0 chr9 34617585 34617704 -83244923 + L1ME4a LINE L1 5857 5991 -130 204 258 86 54 chr9 34617767 34617860 -83244767 - MER5A DNA MER1_type -90 99 4 221 347 112 31 chr9 34618587 34618685 -83243942 + MIR3 SINE MIR 5 110 -98 21 71 0 0 chr9 34619145 34619187 -83243440 + AT_rich Low_complexity Low_complexity 1 42 0 272 177 71 88 chr9 34619425 34619538 -83243089 - L1ME4a LINE L1 -1 6120 6010 1895 181 0 0 chr9 34619570 34619868 -83242759 - AluSx SINE Alu -12 300 3 357 171 72 155 chr9 34620148 34620341 -83242286 + L1MC4a LINE L1 5257 5433 -2375 274 211 227 13 chr9 34620349 34620501 -83242126 + L1MC4a LINE L1 5725 5813 -308 985 87 0 0 chr9 34620717 34620843 -83241784 + AluSp/q SINE Alu 157 282 -31 1614 95 0 27 chr9 34620943 34621164 -83241463 - AluSq SINE Alu -98 215 1 1211 201 43 50 chr9 34621268 34621571 -83241056 - AluJo SINE Alu -11 301 1 38 0 0 0 chr9 34622819 34622857 -83239770 + AT_rich Low_complexity Low_complexity 1 38 0 209 254 0 70 chr9 34623215 34623286 -83239341 + L2 LINE L2 3207 3272 0 274 242 11 22 chr9 34623692 34623783 -83238844 - L1ME4a LINE L1 -62 6059 5970 792 249 91 56 chr9 34623791 34624165 -83238462 - L1ME4a LINE L1 -178 5943 5557 218 265 220 65 chr9 34624225 34624332 -83238295 + MIR SINE MIR 26 115 -147 2254 96 7 3 chr9 34624332 34624624 -83238003 + AluSx SINE Alu 1 293 -19 218 265 220 65 chr9 34624624 34624716 -83237911 + MIR SINE MIR 115 256 -6 2251 141 3 32 chr9 34624771 34625118 -83237509 + MER1B DNA MER1_type 1 337 0 292 216 144 46 chr9 34625125 34625278 -83237349 - L1ME4a LINE L1 -2336 5472 5305 818 146 46 15 chr9 34625359 34625489 -83237138 - FRAM SINE Alu -18 158 25 2247 114 0 7 chr9 34625988 34626295 -83236332 - AluSx SINE Alu -7 305 1 413 288 153 14 chr9 34626303 34626525 -83236102 + L2 LINE L2 2151 2403 -911 906 284 76 76 chr9 34626638 34627336 -83235291 + HAL1 LINE L1 26 723 -1784 531 269 117 43 chr9 34627568 34627660 -83234967 + HAL1 LINE L1 1638 1722 -785 430 149 246 79 chr9 34627660 34627774 -83234853 + FLAM_C SINE Alu 1 133 0 2473 71 0 0 chr9 34627778 34628073 -83234554 + AluSc SINE Alu 1 295 -14 531 269 117 43 chr9 34628073 34628232 -83234395 + HAL1 LINE L1 1724 1913 -594 549 278 102 43 chr9 34628274 34628648 -83233979 + HAL1 LINE L1 1989 2384 -123 2352 96 0 0 chr9 34628749 34629051 -83233576 - AluSq SINE Alu -11 302 1 339 291 196 17 chr9 34629259 34629438 -83233189 - MIR SINE MIR 0 262 52 322 323 81 0 chr9 34629438 34629562 -83233065 - MER94 DNA DNA 0 134 1 205 154 51 0 chr9 34629569 34629608 -83233019 - MIR SINE MIR -220 42 2 1701 194 14 0 chr9 34629763 34630057 -83232570 - AluJo SINE Alu -14 298 1 6667 97 43 23 chr9 34630719 34630771 -83231856 + L1MA3 LINE L1 5218 5268 -1037 1923 142 0 3 chr9 34630771 34631085 -83231542 + AluSq SINE Alu 1 313 0 6667 97 43 23 chr9 34631085 34631096 -83231531 + L1MA3 LINE L1 5268 5277 -1028 1812 146 4 0 chr9 34631096 34631364 -83231263 + AluSx SINE Alu 1 269 -43 210 37 0 0 chr9 34631371 34631398 -83231229 + (CAA)n Simple_repeat Simple_repeat 1 27 0 6667 97 43 23 chr9 34631398 34632406 -83230221 + L1MA3 LINE L1 5282 6298 -7 1947 143 3 10 chr9 34633308 34633602 -83229025 + AluSx SINE Alu 5 296 -16 2253 100 10 0 chr9 34633804 34634103 -83228524 + AluSx SINE Alu 3 304 -8 293 303 54 76 chr9 34634197 34634382 -83228245 + MER21B LTR ERV1 17 197 -666 1533 195 3 3 chr9 34634382 34634664 -83227963 + AluJb SINE Alu 16 297 -15 184 301 84 24 chr9 34635218 34635301 -83227326 - MIR SINE MIR -59 149 62 626 198 16 16 chr9 34635434 34635555 -83227072 + FLAM_C SINE Alu 2 122 -21 1515 201 3 38 chr9 34635569 34635883 -83226744 + AluJb SINE Alu 1 303 -9 382 252 244 0 chr9 34635883 34636006 -83226621 - MIR SINE MIR -92 170 18 1781 160 13 13 chr9 34636025 34636325 -83226302 - AluJb SINE Alu -12 300 1 2456 54 0 3 chr9 34636347 34636641 -83225986 + AluY SINE Alu 1 293 -18 2437 52 16 3 chr9 34638119 34638424 -83224203 + AluSp SINE Alu 1 309 -4 1573 97 13 13 chr9 34638536 34638762 -83223865 + AluSq SINE Alu 75 300 -13 318 18 36 36 chr9 34638784 34638840 -83223787 + (GAAAA)n Simple_repeat Simple_repeat 4 59 0 2147 92 0 14 chr9 34638863 34639156 -83223471 - AluSg SINE Alu -21 289 1 821 193 0 0 chr9 34639315 34639465 -83223162 - AluJb SINE Alu -23 289 140 1874 103 4 4 chr9 34639623 34639894 -83222733 + AluSx SINE Alu 1 271 -41 203 0 0 36 chr9 34639903 34639931 -83222696 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 758 203 92 57 chr9 34640452 34640642 -83221985 + MER20B DNA MER1_type 488 693 -90 1877 107 4 0 chr9 34640642 34640905 -83221722 - AluSx SINE Alu -14 298 35 758 203 92 57 chr9 34640905 34640995 -83221632 + MER20B DNA MER1_type 693 778 -5 808 196 5 15 chr9 34641027 34641226 -83221401 + HAL1b LINE L1 927 1123 -225 1723 155 23 10 chr9 34641236 34641540 -83221087 + AluJo SINE Alu 1 308 -4 2021 110 0 10 chr9 34641548 34641839 -83220788 + AluSg SINE Alu 1 288 -22 24 0 0 0 chr9 34641839 34641863 -83220764 + AT_rich Low_complexity Low_complexity 1 24 0 356 214 57 0 chr9 34642992 34643062 -83219565 + MIR SINE MIR 174 247 -15 761 164 0 0 chr9 34643066 34643222 -83219405 - FLAM_C SINE Alu 0 157 2 2336 58 0 7 chr9 34644676 34644968 -83217659 + L1PA5 LINE L1 5865 6154 0 1894 111 0 0 chr9 34645265 34645526 -83217101 + AluSq SINE Alu 1 261 -52 787 252 70 42 chr9 34645681 34645967 -83216660 + L2 LINE L2 1654 1947 -1367 2356 73 3 0 chr9 34646221 34646521 -83216106 + AluY SINE Alu 1 301 -10 1218 110 6 0 chr9 34646521 34646694 -83215933 + AluSq SINE Alu 134 307 -6 41932 66 7 2 chr9 34646706 34652820 -83209807 + L1PA5 LINE L1 11 6154 0 404 302 130 23 chr9 34652938 34653292 -83209335 + L1MC5 LINE L1 850 1219 -5197 560 241 13 44 chr9 34653294 34653452 -83209175 + Tigger1 DNA MER2_type 1 153 -2265 296 187 0 27 chr9 34653476 34653551 -83209076 + CT-rich Low_complexity Low_complexity 6 78 0 975 151 0 0 chr9 34653553 34653705 -83208922 - FRAM SINE Alu -18 158 7 1147 152 30 5 chr9 34653710 34653908 -83208719 + Tigger1 DNA MER2_type 2216 2418 0 834 244 55 61 chr9 34653933 34654695 -83207932 + L1MC5 LINE L1 1283 2048 -6193 2242 70 7 10 chr9 34654695 34654993 -83207634 - AluSq SINE Alu -16 297 1 834 244 55 61 chr9 34654993 34655177 -83207450 + L1MC5 LINE L1 2048 8206 -35 225 191 0 48 chr9 34655163 34655226 -83207401 + L1MEd LINE L1 1819 1878 -4729 * 2458 41 0 0 chr9 34655384 34655678 -83206949 + AluY SINE Alu 1 294 -17 352 299 83 22 chr9 34655747 34656061 -83206566 + L1MEd LINE L1 2071 2403 -4204 567 289 69 26 chr9 34656074 34656306 -83206321 + L2 LINE L2 1662 1903 -1411 298 247 59 61 chr9 34656321 34656346 -83206281 + L1MEd LINE L1 2394 2418 -4008 2230 90 3 3 chr9 34656346 34656646 -83205981 + AluSg SINE Alu 1 300 -10 298 247 59 61 chr9 34656646 34656805 -83205822 + L1MEd LINE L1 2418 2543 -3883 331 229 12 48 chr9 34656910 34656993 -83205634 + L1MEd LINE L1 1996 2075 -4351 327 187 0 13 chr9 34657010 34657085 -83205542 - L1MB7 LINE L1 -52 6132 6059 2069 118 0 3 chr9 34657112 34657417 -83205210 - AluSx SINE Alu -8 304 1 397 272 4 52 chr9 34657435 34657603 -83205024 + L1MEd LINE L1 2709 2863 -3563 2404 80 0 0 chr9 34657603 34657914 -83204713 + AluY SINE Alu 1 311 0 397 272 4 52 chr9 34657914 34657995 -83204632 + L1MEd LINE L1 2863 2946 -3480 665 176 0 9 chr9 34658011 34658119 -83204508 + MER44D DNA MER2_type 3 379 -230 885 95 0 0 chr9 34658120 34658236 -83204391 - AluSq/x SINE Alu -187 126 11 823 217 6 18 chr9 34658246 34658412 -83204215 - FRAM SINE Alu -14 162 1 2039 235 106 91 chr9 34658475 34658874 -83203753 + L1M4 LINE L1 3657 4048 -2098 2280 84 0 7 chr9 34658874 34659172 -83203455 - AluSp SINE Alu -17 296 1 2039 235 106 91 chr9 34659172 34659361 -83203266 + L1M4 LINE L1 4048 4233 -1913 2137 116 0 0 chr9 34659361 34659662 -83202965 - AluSx SINE Alu -11 301 1 2039 235 106 91 chr9 34659662 34659862 -83202765 + L1M4 LINE L1 4233 4428 -1718 1746 174 0 3 chr9 34659862 34660167 -83202460 + AluJb SINE Alu 1 304 -8 2039 235 106 91 chr9 34660167 34660647 -83201980 + L1M4 LINE L1 4428 4947 -1199 1080 102 0 0 chr9 34660726 34660873 -83201754 - AluSq/x SINE Alu -165 147 1 197 269 0 39 chr9 34660876 34660928 -83201699 - MIR SINE MIR -196 66 17 4152 122 3 35 chr9 34661738 34662247 -83200380 - MER41B LTR ERV1 0 635 150 2217 92 14 0 chr9 34662247 34662542 -83200085 - AluSq SINE Alu -14 299 1 4152 122 3 35 chr9 34662542 34662688 -83199939 - MER41B LTR ERV1 -485 150 1 343 175 155 19 chr9 34664067 34664170 -83198457 + MIR SINE MIR 23 139 -69 578 307 94 15 chr9 34665177 34665473 -83197154 - L1MC4a LINE L1 -297 5824 5533 246 143 0 20 chr9 34666097 34666146 -83196481 - L1MB3 LINE L1 0 6183 6136 2000 100 13 27 chr9 34666148 34666449 -83196178 - AluSx SINE Alu -15 297 1 2161 87 7 7 chr9 34666466 34666765 -83195862 - AluSp SINE Alu -14 299 1 3273 177 41 34 chr9 34666831 34667576 -83195051 - L1MB3 LINE L1 -58 6125 5415 207 171 0 0 chr9 34667995 34668030 -83194597 + GA-rich Low_complexity Low_complexity 1 35 0 194 254 0 14 chr9 34668145 34668216 -83194411 - MIR SINE MIR -132 130 61 577 179 24 41 chr9 34669428 34669551 -83193076 - MIR SINE MIR -10 252 132 530 153 31 10 chr9 34669555 34669653 -83192974 + FLAM_A SINE Alu 42 141 -1 886 149 0 0 chr9 34669658 34669792 -83192835 + FLAM_C SINE Alu 1 134 -9 455 202 91 0 chr9 34669802 34669901 -83192726 - MIR SINE MIR -120 142 35 343 265 10 0 chr9 34669919 34670021 -83192606 + (TG)n Simple_repeat Simple_repeat 2 104 0 458 243 9 19 chr9 34670122 34670229 -83192398 + MER21B LTR ERV1 1 106 -757 4022 188 46 45 chr9 34670287 34670852 -83191775 + MER21B LTR ERV1 19 587 -276 482 261 25 0 chr9 34670852 34670971 -83191656 + FLAM_A SINE Alu 1 122 -11 4022 188 46 45 chr9 34670971 34671246 -83191381 + MER21B LTR ERV1 587 860 -3 355 254 122 6 chr9 34671714 34671863 -83190764 - MIR SINE MIR -5 257 90 264 77 0 0 chr9 34672578 34672617 -83190010 + (A)n Simple_repeat Simple_repeat 1 39 0 271 314 42 0 chr9 34676807 34676925 -83185702 + L1MC5 LINE L1 7805 7927 -34 2054 85 29 0 chr9 34677558 34677839 -83184788 - AluSc SINE Alu -10 299 11 2193 100 7 7 chr9 34677849 34678150 -83184477 - AluSx SINE Alu -11 301 1 1590 152 22 51 chr9 34679708 34680023 -83182604 + AluJo SINE Alu 4 309 -3 2250 103 0 0 chr9 34680188 34680489 -83182138 - AluSx SINE Alu -11 301 1 1801 159 3 0 chr9 34680762 34681058 -83181569 + AluJo SINE Alu 1 297 -15 1730 171 3 0 chr9 34681230 34681534 -83181093 + AluJb SINE Alu 1 305 -7 648 208 47 57 chr9 34682090 34682301 -83180326 + L1MC/D LINE L1 5612 5822 -511 1669 134 14 38 chr9 34682684 34682974 -83179653 - AluSx SINE Alu -6 306 24 389 236 130 24 chr9 34682981 34683104 -83179523 + L2 LINE L2 3167 3302 -11 198 0 0 0 chr9 34683110 34683132 -83179495 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 1474 152 53 8 chr9 34683564 34683828 -83178799 + AluJb SINE Alu 1 276 -36 210 37 0 0 chr9 34683835 34683862 -83178765 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1033 68 8 0 chr9 34684190 34684322 -83178305 + AluSq/x SINE Alu 1 133 -179 2251 89 3 0 chr9 34684325 34684629 -83177998 + AluSx SINE Alu 2 306 -6 294 267 58 0 chr9 34685700 34685786 -83176841 + MIR SINE MIR 56 146 -116 459 146 49 12 chr9 34685882 34685964 -83176663 + AluJb SINE Alu 203 287 -25 217 200 25 0 chr9 34686808 34686848 -83175779 - L2 LINE L2 -665 2649 2609 693 209 0 22 chr9 34687772 34687906 -83174721 - FLAM_A SINE Alu -2 131 1 2271 57 0 7 chr9 34688267 34688590 -83174037 - AluY SINE Alu 0 321 1 829 280 13 59 chr9 34688769 34689158 -83173469 + L1ME4a LINE L1 5561 5931 -190 209 289 0 0 chr9 34689366 34689411 -83173216 + (TGG)n Simple_repeat Simple_repeat 2 46 0 180 0 0 0 chr9 34689424 34689444 -83173183 + (TC)n Simple_repeat Simple_repeat 2 21 0 467 248 38 15 chr9 34692341 34692474 -83170153 - MIR SINE MIR -126 136 1 327 281 97 0 chr9 34692525 34692639 -83169988 + MIR SINE MIR 21 145 -117 258 156 0 0 chr9 34692901 34692946 -83169681 + (TG)n Simple_repeat Simple_repeat 1 45 0 224 291 12 12 chr9 34693409 34693495 -83169132 + A-rich Low_complexity Low_complexity 1 86 0 261 287 128 0 chr9 34693726 34693820 -83168807 - MER103 DNA DNA -48 118 13 207 0 0 0 chr9 34694216 34694239 -83168388 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2380 81 0 0 chr9 34694241 34694525 -83168102 - AluSx SINE Alu -23 289 6 498 331 60 36 chr9 34694530 34694811 -83167816 - L3 LINE CR1 -1041 536 249 226 208 0 38 chr9 34696939 34696992 -83165635 - MER81 DNA DNA -62 52 2 258 301 0 106 chr9 34697090 34697203 -83165424 + MIR SINE MIR 21 121 -87 399 41 0 0 chr9 34697218 34697267 -83165360 + (TG)n Simple_repeat Simple_repeat 1 49 0 506 279 65 0 chr9 34697844 34697998 -83164629 - MER103 DNA DNA -1 165 2 228 360 110 15 chr9 34698904 34699040 -83163587 - MER5A DNA MER1_type -1 188 40 404 236 24 97 chr9 34699541 34699706 -83162921 + MIR3 SINE MIR 23 175 -33 183 263 177 70 chr9 34699955 34700271 -83162356 + L2 LINE L2 2142 2491 -823 222 211 0 0 chr9 34700271 34700323 -83162304 + (CA)n Simple_repeat Simple_repeat 2 53 0 203 260 96 87 chr9 34700465 34700569 -83162058 - L2 LINE L2 -9 3263 3159 29 0 0 0 chr9 34701805 34701834 -83160793 + AT_rich Low_complexity Low_complexity 1 29 0 197 313 50 0 chr9 34702300 34702380 -83160247 + L2 LINE L2 2979 3062 -210 2058 107 16 55 chr9 34702550 34702860 -83159767 + AluSx SINE Alu 1 298 -14 2478 89 0 0 chr9 34703305 34703608 -83159019 - AluSc SINE Alu -6 303 1 800 172 146 0 chr9 34703938 34704089 -83158538 - FRAM SINE Alu -6 170 1 2379 117 0 0 chr9 34704190 34704499 -83158128 + AluSx SINE Alu 1 309 -3 506 281 26 42 chr9 34704822 34705014 -83157613 - MER5A DNA MER1_type 0 189 1 1668 152 23 43 chr9 34705209 34705511 -83157116 - AluJo SINE Alu -16 296 1 2272 97 0 19 chr9 34705555 34705865 -83156762 - AluSg SINE Alu -6 304 1 2332 114 0 22 chr9 34708011 34708328 -83154299 - AluSx SINE Alu -2 310 1 188 321 0 0 chr9 34708470 34708526 -83154101 + L2 LINE L2 3258 3313 0 2006 138 20 0 chr9 34708570 34708874 -83153753 - AluSx SINE Alu -2 310 1 1457 185 8 20 chr9 34709119 34709373 -83153254 + AluJo SINE Alu 42 292 -20 668 282 48 40 chr9 34709377 34709760 -83152867 + L1ME1 LINE L1 5192 5585 -585 229 351 27 21 chr9 34709798 34709986 -83152641 + L1ME1 LINE L1 5678 5866 -304 3739 189 48 115 chr9 34709991 34710598 -83152029 + L1MC4 LINE L1 6760 7406 -636 2016 150 6 19 chr9 34710598 34710912 -83151715 - AluSx SINE Alu -2 310 1 3739 189 48 115 chr9 34710912 34711561 -83151066 + L1MC4 LINE L1 7406 8097 55 297 0 0 0 chr9 34711561 34711594 -83151033 + (CA)n Simple_repeat Simple_repeat 2 34 0 192 40 0 0 chr9 34711593 34711618 -83151009 + (GA)n Simple_repeat Simple_repeat 2 26 0 * 3739 189 48 115 chr9 34711594 34711727 -83150900 + L1MC4 LINE L1 8096 8035 -7 23 0 0 0 chr9 34711728 34711751 -83150876 + AT_rich Low_complexity Low_complexity 1 23 0 941 238 57 5 chr9 34711807 34712074 -83150553 + L1ME1 LINE L1 5889 6147 -19 207 146 0 0 chr9 34712292 34712333 -83150294 + (GGAA)n Simple_repeat Simple_repeat 1 41 0 207 318 127 16 chr9 34712866 34712992 -83149635 + MIR SINE MIR 117 256 -6 584 274 100 53 chr9 34713226 34713363 -83149264 + L1ME4a LINE L1 5027 5156 -990 2023 106 51 0 chr9 34713363 34713637 -83148990 + AluSx SINE Alu 1 288 -24 549 0 0 0 chr9 34713637 34713698 -83148929 + (CATAA)n Simple_repeat Simple_repeat 2 62 0 584 274 100 53 chr9 34713698 34713919 -83148708 + L1ME4a LINE L1 5155 5391 -755 2030 149 10 0 chr9 34713922 34714217 -83148410 + AluSx SINE Alu 1 298 -14 793 143 0 50 chr9 34714245 34714385 -83148242 + FLAM_A SINE Alu 1 133 0 410 264 135 5 chr9 34714386 34714594 -83148033 + L1ME4a LINE L1 5361 5595 -2213 3014 178 57 136 chr9 34714615 34715832 -83146795 + L1M4 LINE L1 3040 4160 -1986 1246 118 133 0 chr9 34716069 34716272 -83146355 - MER30 DNA MER1_type 0 230 1 453 313 18 37 chr9 34716440 34716603 -83146024 - MIR3 SINE MIR -15 193 34 2223 99 0 0 chr9 34717479 34717761 -83144866 - AluSx SINE Alu -30 282 1 454 83 0 62 chr9 34718391 34718487 -83144140 + (CA)n Simple_repeat Simple_repeat 2 91 0 343 316 30 18 chr9 34718593 34718761 -83143866 + L1ME LINE L1 5558 5727 -394 665 205 87 22 chr9 34719107 34719292 -83143335 - MIR SINE MIR 0 262 66 239 346 57 6 chr9 34719469 34719628 -83142999 - MIR3 SINE MIR -6 202 36 233 314 114 53 chr9 34721506 34721814 -83140813 + L1ME4a LINE L1 5630 5975 -146 2082 128 20 3 chr9 34721814 34722110 -83140517 + AluJb SINE Alu 3 303 -9 233 314 114 53 chr9 34722110 34722250 -83140377 + L1ME4a LINE L1 5975 6105 -16 225 0 0 0 chr9 34722349 34722374 -83140253 + (TC)n Simple_repeat Simple_repeat 2 26 0 209 194 0 0 chr9 34723592 34723628 -83138999 + GA-rich Low_complexity Low_complexity 2 37 0 246 342 83 8 chr9 34723680 34723800 -83138827 + L2 LINE L2 3126 3254 -18 2009 104 47 24 chr9 34726298 34726595 -83136032 - AluSx SINE Alu -8 304 1 252 341 65 8 chr9 34726622 34726745 -83135882 - MIR SINE MIR -70 192 63 245 203 176 68 chr9 34727454 34727602 -83135025 - MIR SINE MIR -13 249 86 21 0 0 0 chr9 34728546 34728567 -83134060 + GC_rich Low_complexity Low_complexity 1 21 0 263 194 29 80 chr9 34728659 34728834 -83133793 + (CGGGG)n Simple_repeat Simple_repeat 4 169 0 252 273 127 18 chr9 34729455 34729565 -83133062 - MIR SINE MIR -92 170 49 231 250 19 0 chr9 34729832 34729884 -83132743 - MIR SINE MIR -93 169 117 1704 269 166 16 chr9 34729922 34730846 -83131781 + L2 LINE L2 2003 3135 -178 2435 80 3 3 chr9 34730846 34731148 -83131479 - AluSq SINE Alu -11 302 1 1704 269 166 16 chr9 34731148 34731295 -83131332 + L2 LINE L2 3135 3259 -54 2518 70 0 3 chr9 34731296 34731597 -83131030 - AluY SINE Alu -11 300 1 182 293 17 0 chr9 34732383 34732441 -83130186 + L2 LINE L2 3225 3283 -30 807 264 174 62 chr9 34732444 34732881 -83129746 - MLT1G1 LTR MaLR 0 595 100 1766 199 0 0 chr9 34732881 34733182 -83129445 - AluJo SINE Alu -11 301 1 807 264 174 62 chr9 34733182 34733214 -83129413 - MLT1G1 LTR MaLR -495 100 73 366 223 25 41 chr9 34733388 34733509 -83129118 - LTR45 LTR ERV1 -9 516 398 724 160 109 0 chr9 34733981 34734100 -83128527 + FLAM_C SINE Alu 2 133 0 1548 221 72 47 chr9 34734427 34734449 -83128178 + L1MC4a LINE L1 6444 6464 -1344 2322 101 0 3 chr9 34734449 34734757 -83127870 + AluSx SINE Alu 1 307 -5 1548 221 72 47 chr9 34734757 34734919 -83127708 + L1MC4a LINE L1 6464 6620 -1188 360 0 0 0 chr9 34734919 34734959 -83127668 + (TG)n Simple_repeat Simple_repeat 2 41 0 1548 221 72 47 chr9 34734959 34735311 -83127316 + L1MC4a LINE L1 6620 6995 -813 375 155 68 29 chr9 34735349 34735452 -83127175 + L1MC4 LINE L1 7465 7571 -471 2252 109 0 0 chr9 34735696 34735980 -83126647 + AluSx SINE Alu 3 286 -26 2415 102 0 9 chr9 34736001 34736316 -83126311 + AluSx SINE Alu 1 312 0 279 0 0 0 chr9 34736318 34736349 -83126278 + (TA)n Simple_repeat Simple_repeat 1 31 0 1820 184 10 7 chr9 34736357 34736666 -83125961 + AluJo SINE Alu 1 310 -2 538 249 127 0 chr9 34736667 34736832 -83125795 + L1MC4 LINE L1 7701 7886 -156 1790 128 21 107 chr9 34736838 34737213 -83125414 + MER7A DNA MER2_type 6 346 0 1898 133 53 0 chr9 34737846 34738169 -83124458 + L1PA16 LINE L1 5807 6146 -20 1059 249 14 0 chr9 34738744 34738965 -83123662 + MER58A DNA MER1_type 1 224 0 928 265 124 43 chr9 34738994 34739314 -83123313 - MLT1G1 LTR MaLR -24 531 156 2076 141 0 7 chr9 34739314 34739619 -83123008 - AluJb SINE Alu -9 303 1 928 265 124 43 chr9 34739619 34739789 -83122838 - MLT1G1 LTR MaLR -399 156 1 253 212 91 40 chr9 34740155 34740254 -83122373 - MLT1I LTR MaLR -25 384 281 506 227 104 13 chr9 34740381 34740539 -83122088 - MLT1H LTR MaLR -235 174 29 1066 331 60 50 chr9 34740684 34740883 -83121744 - L3 LINE CR1 -7 1570 1374 1568 196 73 3 chr9 34740883 34741225 -83121402 + MER47A DNA MER2_type 1 366 0 1066 331 60 50 chr9 34741225 34741403 -83121224 - L3 LINE CR1 -203 1374 1199 850 144 8 0 chr9 34741403 34741528 -83121099 - FLAM_A SINE Alu -7 126 1 1066 331 60 50 chr9 34741528 34741748 -83120879 - L3 LINE CR1 -378 1199 966 212 321 60 36 chr9 34741754 34741838 -83120789 - L3 LINE CR1 -931 646 561 370 277 56 90 chr9 34741950 34742217 -83120410 - LTR67 LTR ERVL -297 260 3 368 306 67 50 chr9 34742243 34742423 -83120204 - L3 LINE CR1 -1052 525 343 1701 165 0 14 chr9 34742465 34742750 -83119877 + AluJo SINE Alu 1 281 -31 333 0 0 0 chr9 34742751 34742788 -83119839 + (CA)n Simple_repeat Simple_repeat 2 38 0 579 269 110 57 chr9 34742861 34743125 -83119502 + MLT1K LTR MaLR 40 317 -271 720 166 35 28 chr9 34743139 34743284 -83119343 - MLT1B LTR MaLR 0 390 245 552 142 28 75 chr9 34743323 34743429 -83119198 - AluJo SINE Alu -127 185 85 1338 186 66 30 chr9 34743433 34743766 -83118861 - MLT1C LTR MaLR -122 345 1 396 224 69 46 chr9 34744157 34744331 -83118296 - L1MC5 LINE L1 -35 7926 7749 1431 192 19 26 chr9 34744332 34744598 -83118029 + Tigger7 DNA MER2_type 1 264 -2223 4458 18 4 0 chr9 34744615 34745123 -83117504 + L1PA3 LINE L1 5646 6155 0 3127 62 2 5 chr9 34745123 34745508 -83117119 + L1PA7 LINE L1 5754 6153 -1 186 43 0 0 chr9 34745547 34745570 -83117057 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 315 0 0 0 chr9 34745581 34745616 -83117011 + (CA)n Simple_repeat Simple_repeat 2 36 0 525 165 10 21 chr9 34745616 34745713 -83116914 + Tigger7 DNA MER2_type 2392 2487 0 226 250 45 0 chr9 34745842 34745886 -83116741 - L2 LINE L2 -86 3186 3141 372 263 286 0 chr9 34745915 34746048 -83116579 - MER5A DNA MER1_type -10 179 9 288 205 14 14 chr9 34746394 34746465 -83116162 + MLT1K LTR MaLR 140 246 -342 1927 135 3 7 chr9 34746795 34747098 -83115529 + AluSx SINE Alu 1 302 -10 491 269 0 0 chr9 34747600 34747708 -83114919 - MER81 DNA DNA -6 108 1 236 235 204 68 chr9 34747876 34748008 -83114619 + MIR SINE MIR 36 185 -77 204 293 53 40 chr9 34750347 34750422 -83112205 - L2 LINE L2 -190 3082 3007 252 262 243 0 chr9 34750860 34750963 -83111664 + L2 LINE L2 3145 3272 0 776 162 7 37 chr9 34751311 34751447 -83111180 - FLAM_A SINE Alu -1 132 1 539 285 135 39 chr9 34751454 34751787 -83110840 - MLT1K LTR MaLR -14 574 210 324 177 102 129 chr9 34751901 34752048 -83110579 - MIR SINE MIR -56 206 64 2263 86 0 0 chr9 34752048 34752340 -83110287 - AluSx SINE Alu -20 292 1 352 313 89 36 chr9 34752705 34752929 -83109698 + L1ME LINE L1 5409 5644 -477 595 261 49 126 chr9 34752937 34753094 -83109533 + L1M4 LINE L1 2197 2365 -3781 2340 67 10 22 chr9 34753094 34753408 -83109219 + AluSp SINE Alu 2 311 -2 595 261 49 126 chr9 34753408 34753703 -83108924 + L1M4 LINE L1 2365 2614 -3532 873 144 7 7 chr9 34753750 34753903 -83108724 + AluJb SINE Alu 1 153 -159 234 300 40 20 chr9 34754524 34754674 -83107953 + L1P LINE L1 4906 5058 -1088 739 192 23 0 chr9 34755149 34755279 -83107348 - FLAM_A SINE Alu 0 133 1 873 152 0 28 chr9 34755396 34755541 -83107086 + AluJb SINE Alu 157 297 -15 1900 94 3 76 chr9 34755570 34755721 -83106906 + AluSc SINE Alu 5 121 -188 2349 75 0 0 chr9 34755721 34756029 -83106598 + AluY SINE Alu 1 308 -3 1900 94 3 76 chr9 34756029 34756206 -83106421 + AluSc SINE Alu 121 309 0 1750 162 20 23 chr9 34756274 34756576 -83106051 + AluJo SINE Alu 1 301 -11 2736 138 115 29 chr9 34756581 34757101 -83105526 + MER34B LTR ERV1 1 565 0 1948 154 0 0 chr9 34757230 34757528 -83105099 + AluJo SINE Alu 1 298 -14 420 273 34 89 chr9 34757566 34757668 -83104959 + L1MEd LINE L1 943 1049 -1441 1733 117 95 0 chr9 34757668 34757941 -83104686 + AluSx SINE Alu 1 299 -13 420 273 34 89 chr9 34757941 34758248 -83104379 + L1MEd LINE L1 1049 1417 -1073 281 301 106 24 chr9 34758753 34758876 -83103751 + MIR3 SINE MIR 13 145 -63 2078 124 61 28 chr9 34759060 34759423 -83103204 + THE1C LTR MaLR 1 375 0 737 218 6 6 chr9 34759830 34759986 -83102641 - MER103 DNA DNA -9 157 2 323 360 124 0 chr9 34760034 34760259 -83102368 - L2 LINE L2 -1025 2289 2037 2313 187 63 33 chr9 34760277 34760327 -83102300 + MLT2B3 LTR ERVL 3 50 -504 2358 72 0 7 chr9 34760327 34760633 -83101994 + AluY SINE Alu 1 304 -7 2313 187 63 33 chr9 34760633 34761073 -83101554 + MLT2B3 LTR ERVL 50 508 -46 1463 154 14 7 chr9 34761083 34761346 -83101281 + MER49 LTR ERV1 1 262 -641 235 222 0 21 chr9 34761330 34761397 -83101230 + MER4D LTR ERV1 107 280 -592 * 1542 228 8 34 chr9 34761425 34761780 -83100847 + MER4D LTR ERV1 558 903 0 313 70 26 0 chr9 34761812 34761864 -83100763 + MLT2B3 LTR ERVL 464 554 0 324 294 183 16 chr9 34761951 34762077 -83100550 + MER5A DNA MER1_type 37 183 -6 752 226 144 82 chr9 34762526 34762663 -83099964 + MLT1J LTR MaLR 20 147 -364 1918 115 0 0 chr9 34762663 34762933 -83099694 + AluY SINE Alu 29 298 -13 752 226 144 82 chr9 34762933 34763114 -83099513 + MLT1J LTR MaLR 147 358 -153 1682 163 10 10 chr9 34763115 34763409 -83099218 + AluJb SINE Alu 1 294 -18 468 307 68 0 chr9 34763430 34763606 -83099021 - L2 LINE L2 -1351 1963 1776 342 356 43 16 chr9 34765074 34765141 -83097486 + MIR SINE MIR 20 84 -178 634 202 0 23 chr9 34765141 34765270 -83097357 - FLAM_A SINE Alu -7 126 1 342 356 43 16 chr9 34765270 34765390 -83097237 + MIR SINE MIR 84 212 -50 425 226 169 8 chr9 34765567 34765691 -83096936 + MER5A DNA MER1_type 39 182 -7 508 241 138 106 chr9 34766039 34766437 -83096190 - MLT1J LTR MaLR 0 511 101 2182 79 31 0 chr9 34766939 34767230 -83095397 - AluY SINE Alu -11 300 1 1827 171 0 7 chr9 34767283 34767587 -83095040 + AluJo SINE Alu 1 302 -10 429 299 45 8 chr9 34767630 34767764 -83094863 + L2 LINE L2 3175 3313 0 209 318 0 56 chr9 34768715 34768781 -83093846 - MIR SINE MIR -65 143 84 2369 155 23 3 chr9 34768781 34769169 -83093458 - MSTD LTR MaLR 0 396 1 209 318 0 56 chr9 34769169 34769209 -83093418 - MIR SINE MIR -124 84 43 544 282 77 28 chr9 34769286 34769410 -83093217 + MLT1J2 LTR MaLR 63 179 -271 2133 107 0 7 chr9 34769410 34769709 -83092918 + AluSx SINE Alu 1 297 -15 544 282 77 28 chr9 34769709 34769937 -83092690 + MLT1J2 LTR MaLR 179 450 0 381 309 140 22 chr9 34770039 34770217 -83092410 + MIR SINE MIR 3 201 -61 734 248 149 14 chr9 34770220 34770502 -83092125 + MER20B DNA MER1_type 1 320 -463 592 237 0 23 chr9 34770507 34770638 -83091989 - FLAM_A SINE Alu -5 128 1 998 217 170 59 chr9 34770842 34771265 -83091362 - MLT1D LTR MaLR -1 389 3 1306 70 0 0 chr9 34771272 34771428 -83091199 - MSTA LTR MaLR 0 428 273 487 175 12 0 chr9 34771428 34771508 -83091119 - AluJb SINE Alu -189 123 43 909 226 81 23 chr9 34771536 34771845 -83090782 - MER20B DNA MER1_type -2 781 455 1834 86 25 0 chr9 34771846 34772090 -83090537 - MSTA LTR MaLR -178 250 1 253 243 0 27 chr9 34772243 34772317 -83090310 - LTR33 LTR ERVL -440 81 10 1212 226 86 44 chr9 34772322 34772588 -83090039 + MER20B DNA MER1_type 334 626 -157 2247 110 3 0 chr9 34772588 34772898 -83089729 - AluSx SINE Alu -1 311 1 1212 226 86 44 chr9 34772898 34773061 -83089566 + MER20B DNA MER1_type 626 781 -2 235 239 0 30 chr9 34773568 34773635 -83088992 + GA-rich Low_complexity Low_complexity 6 70 0 978 133 10 77 chr9 34774094 34774218 -83088409 - MER5A DNA MER1_type -6 183 75 2258 87 0 3 chr9 34774218 34774517 -83088110 + AluSx SINE Alu 1 298 -14 978 133 10 77 chr9 34774517 34774588 -83088039 - MER5A DNA MER1_type -114 75 1 503 260 44 132 chr9 34774635 34774822 -83087805 - L2 LINE L2 0 3313 3111 1524 174 35 3 chr9 34774822 34775104 -83087523 + AluJo SINE Alu 1 291 -21 2006 80 0 8 chr9 34775113 34775375 -83087252 + AluSg SINE Alu 36 295 -15 503 260 44 132 chr9 34775375 34775496 -83087131 - L2 LINE L2 -210 3103 3023 212 352 0 0 chr9 34775672 34775777 -83086850 + (TGAA)n Simple_repeat Simple_repeat 3 107 0 360 345 84 25 chr9 34776774 34777058 -83085569 + L1ME4a LINE L1 5329 5629 -492 317 272 0 0 chr9 34777175 34777256 -83085371 + L1ME4a LINE L1 5686 5766 -2042 1723 175 17 0 chr9 34777282 34777573 -83085054 - AluJb SINE Alu -16 296 1 2080 228 78 72 chr9 34778293 34778977 -83083650 + LTR41 LTR ERVL 1 688 -85 1789 118 21 7 chr9 34779013 34779300 -83083327 - AluSx SINE Alu -21 291 1 780 291 58 26 chr9 34779573 34780041 -83082586 + LTR33 LTR ERVL 1 521 0 2165 100 3 3 chr9 34780158 34780467 -83082160 + AluSg SINE Alu 2 310 0 729 211 113 24 chr9 34780732 34780979 -83081648 + L1ME4a LINE L1 5847 6115 -6 1589 186 19 13 chr9 34780979 34781286 -83081341 - AluJo SINE Alu -3 309 1 2128 121 0 6 chr9 34781395 34781709 -83080918 - AluSx SINE Alu 0 312 1 313 252 269 0 chr9 34783314 34783433 -83079194 - MER5A DNA MER1_type 0 189 39 1470 103 0 10 chr9 34783759 34783963 -83078664 - AluSg/x SINE Alu -26 286 85 305 288 112 0 chr9 34784101 34784226 -83078401 + MER103 DNA DNA 25 163 -3 192 48 0 129 chr9 34784438 34784500 -83078127 + (TTTTG)n Simple_repeat Simple_repeat 3 56 0 1963 88 62 0 chr9 34784519 34784793 -83077834 - AluSx SINE Alu -17 295 5 1230 189 14 5 chr9 34785186 34785403 -83077224 + MER20 DNA MER1_type 1 219 0 1116 187 30 32 chr9 34785713 34785760 -83076867 - L1MA4A LINE L1 -12 6156 6110 502 174 43 17 chr9 34785760 34785875 -83076752 - L1MA4A LINE L1 -4 6299 6182 1116 187 30 32 chr9 34785875 34786133 -83076494 - L1MA4A LINE L1 -58 6110 5862 271 323 24 60 chr9 34786211 34786277 -83076350 + L1ME LINE L1 5629 5696 -466 2169 89 7 26 chr9 34786277 34786581 -83076046 - AluSp SINE Alu -15 298 1 271 323 24 60 chr9 34786581 34786762 -83075865 + L1ME LINE L1 5696 5867 -295 817 176 0 0 chr9 34786770 34786901 -83075726 + FLAM_C SINE Alu 3 133 -10 2094 237 61 23 chr9 34787162 34787773 -83074854 - L1ME2 LINE L1 -1 6163 5530 738 190 171 19 chr9 34787778 34787983 -83074644 + L1ME2 LINE L1 5288 5523 -651 315 0 0 0 chr9 34787996 34788031 -83074596 + (CA)n Simple_repeat Simple_repeat 1 35 0 203 351 0 0 chr9 34788433 34788490 -83074137 + polypyrimidine Low_complexity Low_complexity 2 58 0 251 254 130 47 chr9 34788490 34788535 -83074092 - MIR SINE MIR -4 258 218 2106 110 0 13 chr9 34788535 34788835 -83073792 - AluSx SINE Alu -16 296 1 251 254 130 47 chr9 34788835 34788895 -83073732 - MIR SINE MIR -44 218 164 1472 168 36 4 chr9 34788895 34789169 -83073458 - AluJo SINE Alu -25 287 5 251 254 130 47 chr9 34789169 34789231 -83073396 - MIR SINE MIR -98 164 76 1447 216 160 14 chr9 34789241 34789672 -83072955 - MLT1D LTR MaLR -11 494 1 184 358 12 25 chr9 34789672 34789753 -83072874 - MIR3 SINE MIR -126 82 3 443 293 9 61 chr9 34790513 34790663 -83071964 + MIR SINE MIR 14 154 -66 360 272 18 18 chr9 34791195 34791309 -83071318 + MLT1K LTR MaLR 151 264 -324 241 213 53 40 chr9 34791613 34791688 -83070939 + MER91 DNA MER1_type 65 140 0 306 191 135 11 chr9 34791689 34791778 -83070849 - MIR SINE MIR -69 139 40 1617 98 0 0 chr9 34791984 34792187 -83070440 + AluSg/x SINE Alu 96 298 -12 1782 148 52 14 chr9 34792361 34792652 -83069975 + AluJb SINE Alu 1 302 -10 1290 269 73 19 chr9 34792745 34793210 -83069417 + LTR16C LTR ERVL 2 491 0 229 253 25 25 chr9 34793211 34793290 -83069337 + LTR67 LTR ERVL 469 547 -10 489 297 123 59 chr9 34794115 34794749 -83067878 - L2 LINE L2 -261 3011 2337 372 258 92 50 chr9 34794850 34794970 -83067657 + L2 LINE L2 3141 3265 -7 199 300 0 50 chr9 34795881 34795961 -83066666 - MIR SINE MIR -73 135 60 896 298 172 7 chr9 34795980 34796386 -83066241 + L2 LINE L2 2836 3308 -5 1961 155 0 3 chr9 34796713 34797003 -83065624 - AluJb SINE Alu -23 289 1 289 319 37 30 chr9 34797003 34797127 -83065500 - L2 LINE L2 -14 3299 3172 372 339 46 27 chr9 34797342 34797714 -83064913 - L2 LINE L2 -418 2896 2518 619 344 82 30 chr9 34797817 34798256 -83064371 + L2 LINE L2 2811 3272 0 282 298 217 12 chr9 34798821 34798982 -83063645 + L3 LINE CR1 1344 1537 -40 1920 126 22 0 chr9 34798983 34799183 -83063444 - AluSx SINE Alu 0 333 123 333 0 0 0 chr9 34799183 34799220 -83063407 + (TG)n Simple_repeat Simple_repeat 2 38 0 1920 126 22 0 chr9 34799220 34799346 -83063281 - AluSx SINE Alu -210 123 1 288 0 0 0 chr9 34799350 34799382 -83063245 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1933 101 7 22 chr9 34799389 34799666 -83062961 - AluSx SINE Alu -39 273 1 21 0 0 0 chr9 34799954 34799975 -83062652 + AT_rich Low_complexity Low_complexity 1 21 0 906 121 8 0 chr9 34799975 34800099 -83062528 - FLAM_C SINE Alu -7 126 2 238 189 19 0 chr9 34800133 34800186 -83062441 + L1MC4 LINE L1 7987 8040 -2 339 287 10 10 chr9 34800208 34800309 -83062318 - MER5B DNA MER1_type -77 101 1 2178 104 7 3 chr9 34800489 34800786 -83061841 + AluSg SINE Alu 1 298 -12 245 328 88 19 chr9 34800987 34801166 -83061461 - MIR3 SINE MIR -52 156 1 279 231 25 32 chr9 34801169 34801260 -83061367 + CT-rich Low_complexity Low_complexity 1 90 0 303 263 136 8 chr9 34801739 34801857 -83060770 + MIR SINE MIR 20 152 -56 1306 214 104 33 chr9 34802143 34802760 -83059867 - L2 LINE L2 -32 3281 2626 227 27 0 54 chr9 34802994 34803031 -83059596 + (TTTTTG)n Simple_repeat Simple_repeat 1 35 0 2103 113 0 31 chr9 34803188 34803479 -83059148 - AluSg SINE Alu -5 305 24 192 308 92 25 chr9 34803668 34803788 -83058839 - L2 LINE L2 -213 3059 2932 1289 0 74 302 chr9 34804001 34804201 -83058426 - L1ME2 LINE L1 -22 6142 6011 1851 125 0 47 chr9 34804201 34804376 -83058251 - AluJo SINE Alu -12 300 141 1993 138 3 17 chr9 34804376 34804698 -83057929 - AluSx SINE Alu 0 312 1 1851 125 0 47 chr9 34804698 34804801 -83057826 - AluJo SINE Alu -171 141 35 1289 0 74 302 chr9 34804801 34805071 -83057556 - L1ME2 LINE L1 -153 6011 5681 781 331 70 31 chr9 34805092 34805536 -83057091 - L3 LINE CR1 -13 1564 1104 355 321 72 27 chr9 34805822 34806047 -83056580 - LTR16A LTR ERVL -221 229 2 418 324 29 7 chr9 34806168 34806307 -83056320 - L3 LINE CR1 -497 1080 939 470 303 42 19 chr9 34807098 34807283 -83055344 - MIR SINE MIR -23 239 43 205 342 0 0 chr9 34807703 34807779 -83054848 + (CA)n Simple_repeat Simple_repeat 2 77 0 368 297 110 0 chr9 34808330 34808448 -83054179 - L2 LINE L2 0 3313 3183 2286 85 10 33 chr9 34808486 34808793 -83053834 - AluSx SINE Alu -12 300 1 325 333 144 11 chr9 34809245 34809614 -83053013 - L2 LINE L2 -774 2540 2123 1553 125 92 60 chr9 34810215 34810496 -83052131 + AluJo SINE Alu 10 299 -13 384 167 42 0 chr9 34811316 34811388 -83051239 - MLT1J LTR MaLR -9 502 428 971 244 116 0 chr9 34811418 34811737 -83050890 - MLT1J LTR MaLR -152 359 4 2462 99 3 0 chr9 34812316 34812672 -83049955 - AluSp SINE Alu 0 357 1 230 296 0 0 chr9 34812712 34812766 -83049861 - L2 LINE L2 -224 3048 2995 2058 146 0 3 chr9 34812792 34813100 -83049527 + AluSx SINE Alu 1 307 -5 213 229 0 0 chr9 34813791 34813839 -83048788 - L2 LINE L2 0 3313 3266 238 143 63 0 chr9 34813860 34813923 -83048704 + (TA)n Simple_repeat Simple_repeat 2 68 0 480 308 89 54 chr9 34814119 34814505 -83048122 - L2 LINE L2 -221 3051 2636 767 263 83 33 chr9 34814568 34814808 -83047819 + MIR SINE MIR 2 253 -9 828 158 0 0 chr9 34815187 34815307 -83047320 - FLAM_A SINE Alu -13 120 1 1934 144 3 33 chr9 34815311 34815616 -83047011 - AluSx SINE Alu -16 296 1 303 240 83 52 chr9 34817923 34818019 -83044608 + L2 LINE L2 3152 3250 -22 576 274 67 17 chr9 34818526 34818705 -83043922 + MIR SINE MIR 17 204 -58 375 289 110 16 chr9 34818884 34819130 -83043497 + L1ME4a LINE L1 5575 5843 -278 2259 87 10 26 chr9 34819340 34819649 -83042978 + AluSx SINE Alu 1 304 -8 230 291 26 68 chr9 34819708 34819825 -83042802 + MIR3 SINE MIR 86 197 -11 496 266 158 0 chr9 34819972 34820194 -83042433 - MIR SINE MIR -1 261 5 2223 110 7 10 chr9 34820405 34820713 -83041914 + AluSx SINE Alu 1 307 -5 591 284 108 11 chr9 34821143 34821327 -83041300 - MIR SINE MIR -11 251 48 928 211 12 0 chr9 34821327 34821493 -83041134 - FAM SINE Alu -3 172 5 591 284 108 11 chr9 34821493 34821534 -83041093 - MIR SINE MIR -214 48 12 387 265 15 29 chr9 34822623 34822759 -83039868 + L1ME LINE L1 5615 5748 -418 25 0 0 0 chr9 34822982 34823007 -83039620 + AT_rich Low_complexity Low_complexity 1 25 0 185 283 167 66 chr9 34823229 34823427 -83039200 - L2 LINE L2 -20 3293 3076 258 182 0 73 chr9 34823529 34823584 -83039043 + L2 LINE L2 3263 3313 0 2564 83 3 0 chr9 34823703 34824015 -83038612 + AluSq SINE Alu 1 313 0 182 299 0 23 chr9 34824237 34824324 -83038303 + L2 LINE L2 2998 3082 -190 455 283 104 26 chr9 34824346 34824576 -83038051 - MIR SINE MIR -1 261 14 237 300 134 19 chr9 34824836 34824990 -83037637 - MIR SINE MIR -66 142 28 2148 117 0 3 chr9 34827507 34827797 -83034830 + AluSg SINE Alu 1 289 -21 233 284 74 21 chr9 34828098 34828193 -83034434 + MIR3 SINE MIR 7 106 -102 674 278 120 13 chr9 34828216 34828450 -83034177 + MIR SINE MIR 3 261 -1 1063 137 44 0 chr9 34829393 34829576 -83033051 + MER3 DNA MER1_type 12 202 -7 840 269 58 24 chr9 34830020 34830399 -83032228 - L1ME4a LINE L1 -4 6117 5726 2021 128 4 0 chr9 34830539 34830813 -83031814 + AluSx SINE Alu 1 275 -37 225 94 0 0 chr9 34830818 34830850 -83031777 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 368 255 9 0 chr9 34830882 34830988 -83031639 + L1ME LINE L1 5563 5669 -452 2311 86 7 3 chr9 34831009 34831300 -83031327 + AluSp SINE Alu 1 292 -21 2140 116 25 42 chr9 34831369 34831723 -83030904 + MER7A DNA MER2_type 1 346 0 2118 96 40 0 chr9 34832116 34832411 -83030216 + AluSq SINE Alu 1 306 0 413 243 156 52 chr9 34832635 34832734 -83029893 + MIR SINE MIR 56 143 -119 2385 125 17 3 chr9 34832734 34833094 -83029533 + MER47A DNA MER2_type 1 365 -1 413 243 156 52 chr9 34833094 34833167 -83029460 + MIR SINE MIR 143 246 -16 508 246 46 8 chr9 34833555 34833685 -83028942 + L2 LINE L2 3179 3313 0 2399 72 14 0 chr9 34833838 34834129 -83028498 + AluY SINE Alu 1 295 -16 2288 105 10 7 chr9 34834282 34834587 -83028040 - AluSx SINE Alu -6 306 1 202 226 0 81 chr9 34834682 34834744 -83027883 + MER5C DNA MER1_type 146 202 -122 1556 189 56 3 chr9 34835402 34835688 -83026939 - AluJb SINE Alu -10 302 2 535 216 126 65 chr9 34835862 34835927 -83026700 - MIR SINE MIR -45 217 157 2206 116 7 3 chr9 34835927 34836230 -83026397 - AluSx SINE Alu -8 304 1 535 216 126 65 chr9 34836230 34836363 -83026264 - MIR SINE MIR -105 157 7 1022 168 164 14 chr9 34836410 34836618 -83026009 - MER8 DNA MER2_type 0 239 1 2126 132 4 0 chr9 34837043 34837354 -83025273 + AluSx SINE Alu 1 312 0 1839 143 18 4 chr9 34838253 34838533 -83024094 + AluJb SINE Alu 26 309 -3 449 252 59 8 chr9 34838540 34838659 -83023968 - L2 LINE L2 -14 3299 3175 590 286 53 31 chr9 34838833 34839060 -83023567 - L2 LINE L2 -671 2643 2412 180 152 0 0 chr9 34839933 34839966 -83022661 + T-rich Low_complexity Low_complexity 1 33 0 221 308 43 34 chr9 34840092 34840209 -83022418 + MIR SINE MIR 94 211 -51 2165 112 0 3 chr9 34840243 34840529 -83022098 - AluSx SINE Alu -16 296 12 201 231 0 197 chr9 34840555 34840672 -83021955 + MIR3 SINE MIR 84 177 -31 2333 78 7 13 chr9 34840896 34841202 -83021425 + AluSq SINE Alu 1 304 -9 2167 142 3 0 chr9 34841281 34841591 -83021036 - AluSx SINE Alu -1 311 1 376 42 0 0 chr9 34841604 34841652 -83020975 - MER41B LTR ERV1 -110 525 478 439 273 193 6 chr9 34842941 34843102 -83019525 + MIR SINE MIR 7 197 -65 252 323 254 7 chr9 34843554 34843857 -83018770 + L2 LINE L2 1991 2368 -946 787 306 92 45 chr9 34843896 34844406 -83018221 + L2 LINE L2 1883 2416 -898 231 252 78 78 chr9 34845108 34845223 -83017404 + LTR67 LTR ERVL 428 542 -15 * 290 237 0 0 chr9 34845166 34845225 -83017402 + MLT1K LTR MaLR 515 573 -15 633 214 50 7 chr9 34845740 34845880 -83016747 - MER5B DNA MER1_type -32 146 1 1169 224 105 69 chr9 34846002 34846507 -83016120 - L1M4 LINE L1 -2511 3635 3105 1800 156 13 13 chr9 34846507 34846809 -83015818 - AluJo SINE Alu 0 312 11 1169 224 105 69 chr9 34846809 34846883 -83015744 - L1M4 LINE L1 -3041 3105 3035 2590 129 52 67 chr9 34846885 34847099 -83015528 - L1MC1 LINE L1 0 6333 6117 1843 154 10 0 chr9 34847099 34847392 -83015235 - AluSx SINE Alu -10 302 7 2590 129 52 67 chr9 34847392 34847697 -83014930 - L1MC1 LINE L1 -216 6117 5822 1938 150 0 0 chr9 34847709 34848015 -83014612 - AluJb SINE Alu -6 306 1 642 206 23 15 chr9 34848023 34848154 -83014473 - FLAM_A SINE Alu -5 137 6 244 150 0 0 chr9 34848159 34848199 -83014428 - L1MC1 LINE L1 -508 5825 5786 330 265 0 0 chr9 34848204 34848287 -83014340 - L1M4 LINE L1 -3113 3033 2951 452 167 0 0 chr9 34848290 34848374 -83014253 - L1MC5 LINE L1 -885 7076 6993 801 218 66 55 chr9 34848375 34848632 -83013995 + LTR41 LTR ERVL 2 261 -512 531 172 93 116 chr9 34848758 34849044 -83013583 + LTR41 LTR ERVL 460 523 0 1967 82 11 0 chr9 34849274 34849542 -83013085 + AluSx SINE Alu 1 271 -41 269 82 20 0 chr9 34849658 34849707 -83012920 + (TG)n Simple_repeat Simple_repeat 2 51 0 231 61 0 0 chr9 34849841 34849874 -83012753 + (CAGGG)n Simple_repeat Simple_repeat 3 35 0 198 0 0 0 chr9 34851295 34851317 -83011310 + (A)n Simple_repeat Simple_repeat 1 22 0 1302 161 90 7 chr9 34851323 34851602 -83011025 + AluJb SINE Alu 1 302 -10 181 191 0 64 chr9 34852345 34852392 -83010235 + MIR SINE MIR 117 160 -102 298 244 83 113 chr9 34852526 34852792 -83009835 + MER112 DNA MER1_type 1 258 -2 296 188 14 0 chr9 34852839 34852908 -83009719 - MER112 DNA MER1_type -178 82 13 2252 69 7 0 chr9 34852910 34853199 -83009428 + AluY SINE Alu 1 291 -20 767 176 244 19 chr9 34854406 34854611 -83008016 + MIR SINE MIR 12 262 0 370 289 141 26 chr9 34854701 34854857 -83007770 - MIR SINE MIR -40 222 49 332 293 84 56 chr9 34855128 34855343 -83007284 - MIR SINE MIR -41 221 1 24 0 0 0 chr9 34856748 34856772 -83005855 + AT_rich Low_complexity Low_complexity 1 24 0 263 288 26 115 chr9 34857057 34857218 -83005409 + L2 LINE L2 2561 2698 -616 1991 100 41 0 chr9 34857218 34857509 -83005118 - AluSq SINE Alu -10 303 1 263 288 26 115 chr9 34857509 34857573 -83005054 + L2 LINE L2 2698 2766 -548 1559 155 40 25 chr9 34857732 34858009 -83004618 + AluJo SINE Alu 1 281 -31 351 317 92 32 chr9 34858033 34858282 -83004345 + L2 LINE L2 3027 3290 -23 * 525 293 64 71 chr9 34858278 34858544 -83004083 - L3 LINE CR1 -179 1398 1135 1639 180 70 97 chr9 34858718 34859162 -83003465 - MLT1E1 LTR MaLR -2 652 221 588 160 11 11 chr9 34859150 34859244 -83003383 - MLT1E1 LTR MaLR -558 96 3 * 904 263 182 10 chr9 34859297 34859784 -83002843 - L2 LINE L2 -5 3308 2906 1661 172 3 24 chr9 34859784 34860081 -83002546 + AluJo SINE Alu 3 293 -19 904 263 182 10 chr9 34860081 34860316 -83002311 - L2 LINE L2 -407 2906 2378 1946 145 10 0 chr9 34860327 34860638 -83001989 - L1MD3 LINE L1 -9 7986 7673 1412 160 0 13 chr9 34860711 34860949 -83001678 + AluJo SINE Alu 23 257 -55 341 254 118 18 chr9 34861023 34861133 -83001494 - L2 LINE L2 0 3313 3193 399 277 68 40 chr9 34861223 34861352 -83001275 + MIR SINE MIR 31 168 -94 1971 98 40 14 chr9 34861352 34861649 -83000978 - AluSc SINE Alu -4 305 1 399 277 68 40 chr9 34861649 34861696 -83000931 + MIR SINE MIR 168 212 -50 204 281 314 8 chr9 34861936 34862057 -83000570 + L2 LINE L2 3113 3270 -2 530 128 0 0 chr9 34862973 34863059 -82999568 - L1M2 LINE L1 -610 5681 5596 2056 135 0 0 chr9 34863073 34863370 -82999257 + AluSx SINE Alu 1 297 -15 1355 124 48 28 chr9 34863391 34863641 -82998986 - L1MA4 LINE L1 -3 6297 6043 1685 160 31 0 chr9 34863641 34863935 -82998692 - AluJo SINE Alu -9 303 1 2193 116 0 0 chr9 34863940 34864250 -82998377 - AluSg SINE Alu 0 310 1 22 0 0 0 chr9 34864250 34864272 -82998355 + AT_rich Low_complexity Low_complexity 1 22 0 2143 114 16 0 chr9 34865267 34865574 -82997053 + AluSx SINE Alu 1 312 0 269 265 162 26 chr9 34866351 34866468 -82996159 - L2 LINE L2 -3 3310 3178 581 347 116 14 chr9 34867349 34867833 -82994794 - L2 LINE L2 -647 2667 2135 494 275 164 11 chr9 34868722 34868911 -82993716 - MIR SINE MIR -43 219 2 1854 151 0 22 chr9 34869068 34869387 -82993240 - AluJb SINE Alu 0 312 1 1808 165 0 0 chr9 34869442 34869745 -82992882 + AluJo SINE Alu 1 303 -9 486 286 69 25 chr9 34869852 34870055 -82992572 + MIR SINE MIR 51 262 0 2296 77 0 0 chr9 34870357 34870655 -82991972 + AluY SINE Alu 1 298 -13 934 138 0 0 chr9 34870926 34871071 -82991556 - FRAM SINE Alu -30 146 2 325 226 0 0 chr9 34871077 34871139 -82991488 + MER5B DNA MER1_type 117 178 0 420 285 191 29 chr9 34871412 34871721 -82990906 + MARNA DNA Mariner 169 527 -59 623 95 0 48 chr9 34872588 34872693 -82989934 - MER50 LTR ERV1 -138 596 497 2179 99 0 0 chr9 34872838 34873131 -82989496 - AluSg SINE Alu -17 293 1 302 254 15 0 chr9 34873211 34873278 -82989349 + L2 LINE L2 3246 3313 0 502 258 67 0 chr9 34873521 34873641 -82988986 + MIR SINE MIR 54 181 -81 2100 119 0 0 chr9 34873869 34874171 -82988456 + AluSx SINE Alu 1 302 -10 280 239 0 28 chr9 34874382 34874453 -82988174 - MIR3 SINE MIR -136 72 4 329 316 6 29 chr9 34874522 34874587 -82988040 + GA-rich Low_complexity Low_complexity 4 69 -104 929 125 0 22 chr9 34874587 34874723 -82987904 + FLAM_C SINE Alu 1 133 0 329 316 6 29 chr9 34874723 34874831 -82987796 + GA-rich Low_complexity Low_complexity 69 173 0 2076 114 3 3 chr9 34875266 34875564 -82987063 - AluSx SINE Alu -14 298 1 694 139 43 0 chr9 34875675 34875790 -82986837 + AluSq/x SINE Alu 2 121 -192 1977 134 0 0 chr9 34875974 34876273 -82986354 + AluSx SINE Alu 1 299 -13 586 265 41 49 chr9 34876279 34876524 -82986103 + L1ME2 LINE L1 5922 6164 0 1213 69 6 0 chr9 34876662 34876821 -82985806 + AluSq SINE Alu 140 299 -14 264 328 138 42 chr9 34876824 34877178 -82985449 - L3 LINE CR1 -44 1533 1146 1465 167 45 21 chr9 34877196 34877483 -82985144 + AluJb SINE Alu 1 294 -18 252 130 130 0 chr9 34877891 34877937 -82984690 - AluSc SINE Alu -6 296 245 437 129 0 0 chr9 34877937 34877999 -82984628 - AluSc SINE Alu -114 195 134 506 328 225 10 chr9 34878013 34878400 -82984227 - L3 LINE CR1 -627 950 481 1875 158 3 6 chr9 34878716 34879027 -82983600 + AluJb SINE Alu 1 310 -2 289 108 0 0 chr9 34879130 34879167 -82983460 + Alu SINE Alu 4 40 -262 576 148 11 0 chr9 34879167 34879255 -82983372 + AluJb SINE Alu 208 296 -16 2101 103 10 0 chr9 34879272 34879563 -82983064 + AluSq SINE Alu 1 294 -19 1943 136 0 0 chr9 34881103 34881389 -82981238 - AluSx SINE Alu -26 286 1 2210 102 3 13 chr9 34881530 34881844 -82980783 - AluSx SINE Alu -1 311 1 6764 194 106 50 chr9 34883075 34883174 -82979453 + L1M4b LINE L1 4 96 -6863 1667 176 3 13 chr9 34883174 34883476 -82979151 + AluJb SINE Alu 1 299 -13 6764 194 106 50 chr9 34883476 34883498 -82979129 + L1M4b LINE L1 96 115 -6844 2063 133 0 3 chr9 34883498 34883798 -82978829 + AluSx SINE Alu 1 299 -13 6764 194 106 50 chr9 34883798 34885053 -82977574 + L1M4b LINE L1 115 1298 -5661 2209 107 0 0 chr9 34885053 34885362 -82977265 + AluSg SINE Alu 1 309 -1 6764 194 106 50 chr9 34885362 34885540 -82977087 + L1M4b LINE L1 1298 1465 -5494 1397 191 9 67 chr9 34885540 34885676 -82976951 + AluJo SINE Alu 1 143 -169 2046 127 0 3 chr9 34885676 34885967 -82976660 + AluSx SINE Alu 1 290 -22 1397 191 9 67 chr9 34885967 34886145 -82976482 + AluJo SINE Alu 143 297 -15 6764 194 106 50 chr9 34886145 34886226 -82976401 + L1M4b LINE L1 1465 1540 -5419 2254 80 10 17 chr9 34886226 34886528 -82976099 + AluY SINE Alu 1 300 -11 6764 194 106 50 chr9 34886528 34886961 -82975666 + L1M4b LINE L1 1540 2185 -4774 2237 69 31 0 chr9 34886962 34887253 -82975374 + AluY SINE Alu 1 300 -11 508 241 138 106 chr9 34887750 34888148 -82974479 + MLT1J LTR MaLR 101 511 0 1015 75 0 8 chr9 34888760 34888894 -82973733 - AluSq/x SINE Alu -180 133 1 186 43 0 0 chr9 34888910 34888933 -82973694 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 246 81 0 0 chr9 34889024 34889061 -82973566 + (CA)n Simple_repeat Simple_repeat 1 37 0 2256 86 0 19 chr9 34889684 34889999 -82972628 + AluY SINE Alu 1 309 -2 2031 114 0 13 chr9 34890013 34890149 -82972478 + AluSx SINE Alu 1 137 -175 2111 107 0 20 chr9 34890149 34890447 -82972180 + AluSp SINE Alu 1 292 -21 2031 114 0 13 chr9 34890447 34890617 -82972010 + AluSx SINE Alu 137 303 -9 451 248 74 0 chr9 34892003 34892124 -82970503 - MIR SINE MIR -83 179 50 1419 88 0 0 chr9 34892912 34893093 -82969534 + AluSg SINE Alu 1 181 -129 2105 103 3 38 chr9 34893464 34893784 -82968843 + AluSc SINE Alu 1 309 0 2201 103 3 22 chr9 34893796 34894115 -82968512 + AluSp SINE Alu 1 313 0 2027 98 13 63 chr9 34894587 34894905 -82967722 - AluSq SINE Alu -11 302 1 372 250 14 71 chr9 34894970 34895110 -82967517 - L2 LINE L2 -559 2755 2624 2347 87 0 0 chr9 34895661 34895960 -82966667 - AluSg SINE Alu -11 299 1 1877 105 59 36 chr9 34896294 34896598 -82966029 + AluSq SINE Alu 1 311 -2 272 229 60 24 chr9 34896789 34896872 -82965755 + MIR SINE MIR 36 121 -87 821 81 8 32 chr9 34897425 34897548 -82965079 + FLAM_C SINE Alu 23 142 -1 2260 100 10 3 chr9 34898160 34898470 -82964157 + AluSq SINE Alu 1 312 -1 296 333 75 0 chr9 34898610 34898703 -82963924 - MIR SINE MIR -107 155 56 304 309 13 81 chr9 34899397 34899546 -82963081 + MIR SINE MIR 113 251 -11 195 261 23 57 chr9 34899685 34899773 -82962854 - L2 LINE L2 -38 3275 3191 668 150 67 25 chr9 34899841 34899961 -82962666 - FLAM_C SINE Alu -7 126 2 562 344 42 8 chr9 34903776 34904017 -82958610 - MIR SINE MIR -8 254 6 721 256 113 135 chr9 34908583 34908783 -82953844 + L2 LINE L2 2276 2479 -834 2217 62 24 0 chr9 34908783 34909071 -82953556 + AluY SINE Alu 1 295 -16 721 256 113 135 chr9 34909071 34909362 -82953265 + L2 LINE L2 2479 2775 -538 1952 114 45 10 chr9 34909362 34909652 -82952975 + AluSq SINE Alu 1 300 -13 721 256 113 135 chr9 34909652 34910221 -82952406 + L2 LINE L2 2775 3295 -18 2067 126 13 0 chr9 34911062 34911363 -82951264 + AluSx SINE Alu 1 305 -7 316 365 32 6 chr9 34912586 34912742 -82949885 + L2 LINE L2 2467 2626 -688 315 0 0 0 chr9 34912798 34912833 -82949794 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1809 142 0 0 chr9 34912840 34913115 -82949512 - AluSx SINE Alu -37 275 1 714 256 83 9 chr9 34913115 34913439 -82949188 - L1MC4 LINE L1 -4 8038 7691 329 0 24 0 chr9 34913488 34913529 -82949098 + (TA)n Simple_repeat Simple_repeat 2 43 0 1881 143 7 13 chr9 34913529 34913837 -82948790 - AluSx SINE Alu -6 306 1 656 269 42 0 chr9 34913840 34914052 -82948575 - L1ME3A LINE L1 -5 6165 5945 2322 58 0 10 chr9 34914062 34914383 -82948244 - AluY SINE Alu 0 311 1 305 339 8 0 chr9 34914421 34914551 -82948076 + L2 LINE L2 2654 2784 -530 186 71 0 0 chr9 34914601 34914629 -82947998 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 2034 112 0 18 chr9 34914631 34914916 -82947711 - AluSx SINE Alu -32 280 1 1026 195 212 0 chr9 34914941 34915167 -82947460 - AluJb SINE Alu -30 282 9 271 344 63 42 chr9 34915172 34915361 -82947266 + L2 LINE L2 2836 3028 -244 1280 142 49 0 chr9 34915361 34915565 -82947062 - AluJb SINE Alu -98 214 1 1958 148 13 0 chr9 34915616 34915920 -82946707 - AluSx SINE Alu -2 310 3 198 71 0 0 chr9 34915943 34915971 -82946656 + (TCCC)n Simple_repeat Simple_repeat 2 29 0 2007 124 6 13 chr9 34915980 34916294 -82946333 - AluSx SINE Alu 0 312 1 1296 185 0 0 chr9 34917091 34917307 -82945320 + AluJo SINE Alu 22 237 -75 2385 79 0 3 chr9 34917577 34917881 -82944746 - AluSq SINE Alu -10 303 1 1334 182 30 34 chr9 34918083 34918347 -82944280 + AluJo SINE Alu 34 296 -16 2121 112 3 0 chr9 34918423 34918718 -82943909 + AluSx SINE Alu 2 297 -15 838 129 23 23 chr9 34922095 34922227 -82940400 - FLAM_C SINE Alu 0 133 2 2290 89 3 13 chr9 34922615 34922928 -82939699 - AluSx SINE Alu -2 310 1 312 175 0 0 chr9 34925472 34925535 -82937092 + (TG)n Simple_repeat Simple_repeat 1 63 0 29 0 0 0 chr9 34926048 34926077 -82936550 + AT_rich Low_complexity Low_complexity 1 29 0 311 253 121 20 chr9 34926364 34926463 -82936164 + L3 LINE CR1 1344 1452 -125 228 326 91 0 chr9 34926492 34926624 -82936003 + L2 LINE L2 2563 2706 -608 190 289 50 6 chr9 34927262 34927334 -82935293 - MIR SINE MIR -68 140 74 350 271 181 19 chr9 34927687 34927842 -82934785 + MIR SINE MIR 72 251 -11 2472 53 0 3 chr9 34928372 34928671 -82933956 + AluY SINE Alu 1 298 -13 2196 114 0 0 chr9 34928671 34928968 -82933659 + AluSg SINE Alu 1 298 -12 2166 115 0 0 chr9 34929339 34929656 -82932971 - AluSq SINE Alu 0 313 1 208 214 0 0 chr9 34929936 34929978 -82932649 + (GGGTG)n Simple_repeat Simple_repeat 4 45 0 206 254 60 0 chr9 34930447 34930514 -82932113 - MIR SINE MIR -103 105 35 502 253 62 43 chr9 34930631 34930793 -82931834 + LTR33 LTR ERVL 26 190 -331 452 279 93 5 chr9 34930817 34931021 -82931606 + LTR33 LTR ERVL 297 518 -3 519 269 47 27 chr9 34931024 34931173 -82931454 + MIR SINE MIR 107 258 -4 183 250 39 0 chr9 34931625 34931677 -82930950 - L3b LINE CR1 -178 1405 1352 277 288 9 0 chr9 34932783 34932894 -82929733 + (CA)n Simple_repeat Simple_repeat 2 113 0 209 364 73 33 chr9 34933276 34933427 -82929200 - MIR SINE MIR -67 141 16 2109 109 0 14 chr9 34933687 34933981 -82928646 - AluSx SINE Alu -22 290 1 1805 166 16 3 chr9 34933985 34934292 -82928335 - AluJo SINE Alu -1 311 1 989 127 0 0 chr9 34934327 34934469 -82928158 + AluSq/x SINE Alu 1 142 -170 311 231 13 0 chr9 34934721 34934799 -82927828 + AluS SINE Alu 1 79 -224 1442 170 0 12 chr9 34934799 34935075 -82927552 + AluSx SINE Alu 33 305 0 1419 191 19 44 chr9 34935089 34935409 -82927218 - AluJo SINE Alu 0 312 1 2198 108 0 0 chr9 34935415 34935712 -82926915 - AluSq SINE Alu -16 297 1 534 306 104 20 chr9 34935813 34936160 -82926467 - MLT1K LTR MaLR -2 586 211 187 234 0 94 chr9 34936239 34936303 -82926324 - L2 LINE L2 -93 3220 3163 378 312 89 7 chr9 34936373 34936594 -82926033 - L2 LINE L2 -245 3027 2790 249 348 0 44 chr9 34936738 34936873 -82925754 + MIR3 SINE MIR 71 199 -9 220 27 54 0 chr9 34937147 34937184 -82925443 + (CAAA)n Simple_repeat Simple_repeat 4 42 0 2047 111 3 7 chr9 34937186 34937505 -82925122 + AluSx SINE Alu 1 318 0 2018 150 0 13 chr9 34937740 34938054 -82924573 + AluJb SINE Alu 1 310 -2 1639 152 73 13 chr9 34938060 34938376 -82924251 + L1MB7 LINE L1 5833 6167 -17 2234 98 0 3 chr9 34938392 34938689 -82923938 - AluSc SINE Alu -13 296 1 2009 128 0 0 chr9 34938768 34939089 -82923538 - AluSx SINE Alu 0 323 3 2297 67 3 0 chr9 34939384 34939703 -82922924 - AluSp SINE Alu 0 320 1 1539 111 5 9 chr9 34939729 34939946 -82922681 + AluJo SINE Alu 84 299 -13 254 191 246 9 chr9 34940007 34940117 -82922510 + L2 LINE L2 3178 3313 0 2262 76 0 7 chr9 34941454 34941742 -82920885 - AluSx SINE Alu -22 290 5 2204 104 3 0 chr9 34941750 34942049 -82920578 - AluSx SINE Alu -12 300 1 377 324 98 17 chr9 34942111 34942284 -82920343 + L2 LINE L2 3127 3313 0 258 246 87 0 chr9 34942276 34942345 -82920282 - MIR SINE MIR -2 260 186 * 2442 64 0 6 chr9 34942616 34942929 -82919698 + AluY SINE Alu 1 311 0 183 100 0 0 chr9 34943025 34943055 -82919572 + (T)n Simple_repeat Simple_repeat 1 30 0 6909 122 26 67 chr9 34943258 34944622 -82918005 - SVA Other Other 0 1386 79 2042 117 18 3 chr9 34944368 34944650 -82917977 + AluSq SINE Alu 9 294 -19 * 388 339 73 46 chr9 34944667 34944826 -82917801 + L1ME2 LINE L1 5588 5788 -378 27 29 0 0 chr9 34944826 34944860 -82917767 + AT_rich Low_complexity Low_complexity 1 34 0 388 339 73 46 chr9 34944860 34944885 -82917742 + L1ME2 LINE L1 5788 5811 -355 603 265 41 49 chr9 34945304 34945549 -82917078 + L1ME2 LINE L1 5922 6164 0 1282 69 6 0 chr9 34945687 34945846 -82916781 + AluSq SINE Alu 140 299 -14 288 328 88 8 chr9 34945917 34946042 -82916585 - L3 LINE CR1 -102 1475 1341 1584 167 45 21 chr9 34946221 34946509 -82916118 + AluJb SINE Alu 1 295 -17 254 130 130 0 chr9 34946917 34946963 -82915664 - AluSc SINE Alu -6 296 245 432 129 0 0 chr9 34946963 34947025 -82915602 - AluSc SINE Alu -114 195 134 423 329 88 12 chr9 34947039 34947426 -82915201 - L3 LINE CR1 -627 950 481 2137 154 0 0 chr9 34947742 34948054 -82914573 + AluJb SINE Alu 1 312 0 286 108 0 0 chr9 34948157 34948194 -82914433 + Alu SINE Alu 4 40 -262 582 146 11 0 chr9 34948194 34948283 -82914344 + AluJb SINE Alu 208 297 -15 2377 97 10 0 chr9 34948300 34948608 -82914019 + AluSq SINE Alu 1 311 -2 2061 136 0 0 chr9 34950130 34950416 -82912211 - AluSx SINE Alu -26 286 1 2340 102 3 13 chr9 34950557 34950871 -82911756 - AluSx SINE Alu -1 311 1 6801 196 107 50 chr9 34952101 34952200 -82910427 + L1M4b LINE L1 4 96 -7042 1782 176 3 13 chr9 34952200 34952502 -82910125 + AluJb SINE Alu 1 299 -13 6801 196 107 50 chr9 34952502 34952524 -82910103 + L1M4b LINE L1 96 115 -7023 2187 133 0 3 chr9 34952524 34952824 -82909803 + AluSx SINE Alu 1 299 -13 6801 196 107 50 chr9 34952824 34954079 -82908548 + L1M4b LINE L1 115 1297 -5841 2342 107 0 0 chr9 34954079 34954388 -82908239 + AluSg SINE Alu 1 309 -1 6801 196 107 50 chr9 34954388 34954567 -82908060 + L1M4b LINE L1 1297 1464 -5674 1500 184 9 67 chr9 34954567 34954703 -82907924 + AluJo SINE Alu 1 143 -169 2253 121 0 0 chr9 34954703 34954993 -82907634 + AluSx SINE Alu 1 290 -22 1500 184 9 67 chr9 34954993 34955171 -82907456 + AluJo SINE Alu 143 297 -15 6801 196 107 50 chr9 34955171 34955252 -82907375 + L1M4b LINE L1 1464 1539 -5599 2387 80 10 17 chr9 34955252 34955554 -82907073 + AluY SINE Alu 1 300 -11 6801 196 107 50 chr9 34955554 34955988 -82906639 + L1M4b LINE L1 1539 1947 -5191 2542 56 7 3 chr9 34955988 34956294 -82906333 + AluY SINE Alu 1 307 -4 6801 196 107 50 chr9 34956294 34956623 -82906004 + L1M4b LINE L1 1947 2687 -4451 679 270 83 45 chr9 34956653 34956735 -82905892 + L1MEc LINE L1 1734 1811 -4585 2199 146 0 0 chr9 34956735 34957043 -82905584 + AluSx SINE Alu 1 308 -4 1507 214 3 7 chr9 34957043 34957331 -82905296 + AluJo SINE Alu 1 288 -24 679 270 83 45 chr9 34957331 34957762 -82904865 + L1MEc LINE L1 1810 2268 -4128 829 194 0 0 chr9 34957793 34957927 -82904700 - AluJo SINE Alu -178 134 1 440 226 20 14 chr9 34957927 34957983 -82904644 + L1MEc LINE L1 2245 2299 -3916 2342 74 0 7 chr9 34957983 34958267 -82904360 - AluSg SINE Alu -28 282 1 440 226 20 14 chr9 34958267 34958356 -82904271 + L1MEc LINE L1 2299 2391 -3824 1693 163 6 51 chr9 34958614 34958927 -82903700 - AluJb SINE Alu -13 299 1 1603 213 57 108 chr9 34959585 34960177 -82902450 - MER77 LTR ERV1 -4 601 40 2157 138 0 6 chr9 34960247 34960559 -82902068 - AluSx SINE Alu -2 310 1 1136 89 0 0 chr9 34960559 34960694 -82901933 - AluSq/x SINE Alu -178 135 1 2242 80 49 0 chr9 34961497 34961783 -82900844 + AluY SINE Alu 1 300 -11 347 153 137 48 chr9 34963099 34963223 -82899404 + L1ME2 LINE L1 5991 6125 -39 2270 110 3 0 chr9 34963445 34963745 -82898882 - AluSx SINE Alu -11 301 1 458 298 35 0 chr9 34963867 34964008 -82898619 - MLT1L LTR MaLR 0 615 470 474 275 135 10 chr9 34964192 34964385 -82898242 - MLT1L LTR MaLR -398 217 1 2300 114 0 0 chr9 34964465 34964764 -82897863 + AluSx SINE Alu 3 301 -11 1721 194 7 7 chr9 34964773 34965082 -82897545 + AluJo SINE Alu 1 309 -3 328 272 130 27 chr9 34965261 34965445 -82897182 - L1MC4a LINE L1 -1898 5910 5708 448 261 37 43 chr9 34965486 34965674 -82896953 - L1MC5 LINE L1 -50 7911 7725 412 102 286 0 chr9 34965685 34965783 -82896844 - L1MB5 LINE L1 0 6174 6049 2473 92 0 6 chr9 34965818 34966133 -82896494 - AluSq SINE Alu 0 313 1 26 0 0 0 chr9 34966133 34966159 -82896468 + AT_rich Low_complexity Low_complexity 1 26 0 555 165 0 0 chr9 34966159 34966250 -82896377 - FLAM_C SINE Alu -23 120 30 3190 158 44 31 chr9 34966252 34966812 -82895815 - L1MB5 LINE L1 -115 6059 5489 2352 88 0 0 chr9 34966812 34967109 -82895518 - AluSg SINE Alu -8 302 6 3190 158 44 31 chr9 34967109 34967164 -82895463 - L1MB5 LINE L1 -685 5489 5436 808 189 34 0 chr9 34967214 34967362 -82895265 - AluJb SINE Alu -20 292 140 22 70 0 0 chr9 34967367 34967410 -82895217 + AT_rich Low_complexity Low_complexity 1 43 0 1921 61 4 4 chr9 34967420 34967650 -82894977 + AluSq SINE Alu 1 230 -83 552 150 0 0 chr9 34967653 34967733 -82894894 - AluJo/FLAM SINE Alu -188 124 45 1120 169 36 1 chr9 34967761 34968062 -82894565 - MER2 DNA MER2_type 0 345 8 790 230 7 0 chr9 34968181 34968329 -82894298 + FRAM SINE Alu 1 146 -30 261 0 0 0 chr9 34968332 34968361 -82894266 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2448 98 0 0 chr9 34968367 34968673 -82893954 + AluSx SINE Alu 1 306 -6 2128 131 3 0 chr9 34968675 34968980 -82893647 + AluSx SINE Alu 2 307 -5 40 21 0 0 chr9 34969601 34969648 -82892979 + AT_rich Low_complexity Low_complexity 1 47 0 220 165 35 71 chr9 34969712 34969775 -82892852 + (TA)n Simple_repeat Simple_repeat 1 65 -17 2067 128 57 25 chr9 34969775 34970128 -82892499 - THE1B LTR MaLR 0 364 1 12129 88 5 0 chr9 34970128 34971701 -82890926 - THE1B-int LTR MaLR 0 1580 1 2200 123 47 33 chr9 34971701 34972060 -82890567 - THE1B LTR MaLR 0 364 1 220 165 35 71 chr9 34972060 34972079 -82890548 + (TA)n Simple_repeat Simple_repeat 62 82 0 29 0 0 0 chr9 34972139 34972168 -82890459 + AT_rich Low_complexity Low_complexity 1 29 0 810 157 21 14 chr9 34972249 34972389 -82890238 + AluJb SINE Alu 1 141 -171 2070 125 4 0 chr9 34972435 34972716 -82889911 + AluSx SINE Alu 1 282 -30 207 0 0 0 chr9 34972729 34972752 -82889875 + (CA)n Simple_repeat Simple_repeat 1 23 0 29 0 0 0 chr9 34972756 34972785 -82889842 + AT_rich Low_complexity Low_complexity 1 29 0 2303 76 0 4 chr9 34972790 34973066 -82889561 + AluY SINE Alu 13 287 -24 634 202 46 35 chr9 34973080 34973253 -82889374 - L1MC5 LINE L1 -56 7905 7731 2249 192 168 19 chr9 34973765 34974448 -82888179 - Charlie1 DNA MER1_type 0 2761 1977 25 31 0 0 chr9 34974495 34974527 -82888100 + AT_rich Low_complexity Low_complexity 1 32 0 311 252 72 73 chr9 34975121 34975183 -82887444 - L1ME4a LINE L1 -2 6119 6058 2341 86 0 3 chr9 34975183 34975474 -82887153 + AluSc SINE Alu 1 290 -19 2371 119 0 0 chr9 34975478 34975790 -82886837 + AluSx SINE Alu 1 312 0 2348 99 0 0 chr9 34975793 34976085 -82886542 + AluSx SINE Alu 1 292 -20 311 252 72 73 chr9 34976085 34976431 -82886196 - L1ME4a LINE L1 -68 6053 5704 812 237 50 5 chr9 34977845 34978064 -82884563 - L1ME1 LINE L1 -2 6164 5936 5225 58 24 38 chr9 34978088 34978669 -82883958 + L1PB1 LINE L1 5444 6015 -136 2040 105 20 30 chr9 34978669 34978965 -82883662 + AluSg SINE Alu 3 295 -15 5225 58 24 38 chr9 34978965 34979101 -82883526 + L1PB1 LINE L1 6015 6151 0 1243 169 24 0 chr9 34979111 34979324 -82883303 - Tigger1 DNA MER2_type -2187 231 14 374 313 49 28 chr9 34979733 34979877 -82882750 - L2 LINE L2 -5 3267 3121 1337 168 10 0 chr9 34980410 34980619 -82882008 + AluJo SINE Alu 85 295 -17 2384 109 0 0 chr9 34980621 34980933 -82881694 + AluSx SINE Alu 1 312 0 762 198 0 0 chr9 34981309 34981430 -82881197 + FLAM_A SINE Alu 1 121 -12 2051 117 17 20 chr9 34981463 34981762 -82880865 + AluSx SINE Alu 1 298 -14 1535 184 60 11 chr9 34981776 34982059 -82880568 + AluJb SINE Alu 2 298 -14 277 301 54 0 chr9 34982659 34982752 -82879875 - L2 LINE L2 -1 3271 3174 631 48 60 0 chr9 34983389 34983473 -82879154 - HY3 scRNA scRNA -1 100 12 507 113 245 19 chr9 34983538 34983644 -82878983 - FLAM_C SINE Alu -2 131 2 2325 106 0 3 chr9 34984286 34984587 -82878040 - AluSq SINE Alu -13 300 1 2142 236 100 60 chr9 34985801 34986235 -82876392 - L1ME3A LINE L1 -3 6167 5752 2314 115 0 0 chr9 34986235 34986540 -82876087 - AluSq SINE Alu -8 305 1 2142 236 100 60 chr9 34986540 34987375 -82875252 - L1ME3A LINE L1 -418 5752 4860 1208 166 9 23 chr9 34987388 34987605 -82875022 + AluJb SINE Alu 87 300 -12 2069 92 29 57 chr9 34987607 34987921 -82874706 + AluY SINE Alu 1 305 -6 811 231 108 102 chr9 34987936 34988135 -82874492 - L1ME3A LINE L1 -1301 4845 4649 1710 171 3 46 chr9 34988135 34988440 -82874187 - AluJo SINE Alu -20 292 1 811 231 108 102 chr9 34988440 34988711 -82873916 - L1ME3A LINE L1 -1497 4649 4372 2327 100 0 0 chr9 34988728 34989019 -82873608 - AluY SINE Alu -20 291 1 35 0 0 0 chr9 34989022 34989057 -82873570 + AT_rich Low_complexity Low_complexity 1 35 0 1389 167 23 109 chr9 34989245 34989593 -82873034 - AluYb8 SINE Alu 0 318 1 740 207 44 151 chr9 34989602 34989911 -82872716 - L1ME3A LINE L1 -1784 4362 4104 2314 101 0 0 chr9 34989911 34990208 -82872419 + AluSx SINE Alu 1 297 -15 740 207 44 151 chr9 34990208 34990303 -82872324 - L1ME3A LINE L1 -2042 4104 4001 308 247 62 0 chr9 34990380 34990477 -82872150 + L1MC4 LINE L1 7940 8042 0 899 230 15 49 chr9 34990793 34991058 -82871569 + MIR SINE MIR 5 260 -2 198 275 0 0 chr9 34991200 34991269 -82871358 + (TA)n Simple_repeat Simple_repeat 2 70 0 270 209 115 101 chr9 34991293 34991441 -82871186 + Charlie8 DNA MER1_type 24 173 -2244 743 76 98 8 chr9 34991909 34992041 -82870586 - L1MA8 LINE L1 -2 6289 6146 2258 82 0 0 chr9 34992085 34992355 -82870272 + AluSq SINE Alu 1 270 -43 235 135 0 0 chr9 34992355 34992392 -82870235 + AluSq SINE Alu 253 289 -14 3951 138 30 44 chr9 34992425 34992436 -82870191 + L1MA6 LINE L1 5510 5520 -780 1838 155 10 10 chr9 34992436 34992745 -82869882 + AluJb SINE Alu 1 309 -3 3951 138 30 44 chr9 34992745 34993287 -82869340 + L1MA6 LINE L1 5520 6051 -249 2518 84 0 0 chr9 34993287 34993597 -82869030 - AluSp SINE Alu -3 310 1 3951 138 30 44 chr9 34993597 34993844 -82868783 + L1MA6 LINE L1 6051 6300 0 336 24 0 0 chr9 34993857 34993898 -82868729 + (TTA)n Simple_repeat Simple_repeat 1 41 0 2025 136 4 0 chr9 34993898 34994177 -82868450 - AluSx SINE Alu -32 280 1 2150 126 0 0 chr9 34995585 34995870 -82866757 + AluSq SINE Alu 1 285 -28 217 0 0 0 chr9 34995870 34995894 -82866733 + (GAAA)n Simple_repeat Simple_repeat 2 132 0 1969 160 3 13 chr9 34995918 34996230 -82866397 + AluJb SINE Alu 2 310 -2 212 315 79 11 chr9 34996317 34996406 -82866221 + L3 LINE CR1 1226 1320 -257 2281 87 0 10 chr9 34998545 34998843 -82863784 + AluSx SINE Alu 1 295 -17 2597 63 7 0 chr9 34999653 34999956 -82862671 - AluY SINE Alu -6 305 1 316 213 88 110 chr9 34999990 35000126 -82862501 - L1MC5 LINE L1 -31 7930 7798 343 281 29 29 chr9 35000132 35000271 -82862356 + Tigger8 DNA MER2_type 401 539 -127 21 0 0 0 chr9 35000372 35000393 -82862234 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 35001724 35001746 -82860881 + AT_rich Low_complexity Low_complexity 1 22 0 200 238 30 15 chr9 35002056 35002172 -82860455 + MIR SINE MIR 38 207 -55 214 300 64 91 chr9 35002730 35002795 -82859832 - L2 LINE L2 -557 2757 2692 1330 213 52 9 chr9 35002795 35003119 -82859508 - MER58B DNA MER1_type 0 341 4 214 300 64 91 chr9 35003119 35003273 -82859354 - L2 LINE L2 -622 2692 2544 203 152 0 0 chr9 35003771 35003804 -82858823 + GA-rich Low_complexity Low_complexity 2 34 0 194 273 0 0 chr9 35004814 35004858 -82857769 - MIR SINE MIR 0 262 219 723 159 45 70 chr9 35004896 35005053 -82857574 + FRAM SINE Alu 6 158 -18 2020 136 10 7 chr9 35005053 35005347 -82857280 + AluJo SINE Alu 1 295 -17 474 238 19 9 chr9 35005348 35005474 -82857153 - MIR SINE MIR -62 146 45 1604 251 179 44 chr9 35005907 35006124 -82856503 - L2 LINE L2 -340 2974 2788 2031 140 7 0 chr9 35006124 35006432 -82856195 - AluSx SINE Alu -2 310 1 1604 251 179 44 chr9 35006432 35006990 -82855637 - L2 LINE L2 -526 2788 2094 2572 61 0 0 chr9 35007251 35007548 -82855079 - AluY SINE Alu -14 297 1 193 339 63 16 chr9 35007930 35008057 -82854570 + L2 LINE L2 2625 2757 -557 1229 178 109 67 chr9 35008127 35008559 -82854068 - LTR7 LTR ERV1 0 450 1 301 209 13 3 chr9 35009346 35009424 -82853203 - MIR SINE MIR -43 165 88 2687 20 7 3 chr9 35009444 35009744 -82852883 - AluY SINE Alu -10 301 1 2387 108 0 0 chr9 35009858 35010165 -82852462 + AluSx SINE Alu 1 307 -5 364 238 0 0 chr9 35010426 35010506 -82852121 - MIR SINE MIR -160 102 23 298 322 68 0 chr9 35010925 35011043 -82851584 - MIR3 SINE MIR -23 185 60 228 315 0 0 chr9 35011127 35011181 -82851446 + (TG)n Simple_repeat Simple_repeat 1 54 0 299 130 19 0 chr9 35011244 35011298 -82851329 + CT-rich Low_complexity Low_complexity 4 58 0 736 233 301 8 chr9 35011397 35011779 -82850848 + L2 LINE L2 2819 3312 -1 1386 381 0 26 chr9 35012401 35012711 -82849916 + AluSx SINE Alu 1 302 -10 2120 120 36 0 chr9 35012711 35013045 -82849582 + L1MB3 LINE L1 5665 6010 -173 348 70 53 18 chr9 35013045 35013102 -82849525 + MER57A LTR ERV1 7 65 -338 2291 108 3 0 chr9 35013103 35013398 -82849229 + AluSx SINE Alu 1 296 -16 239 0 32 0 chr9 35013402 35013433 -82849194 + (TA)n Simple_repeat Simple_repeat 2 33 0 994 158 12 12 chr9 35013687 35013852 -82848775 - AluSg/x SINE Alu -12 300 136 2506 80 0 0 chr9 35013853 35014152 -82848475 - AluSc SINE Alu -10 299 1 330 298 7 21 chr9 35014167 35014308 -82848319 - L1ME3 LINE L1 -295 5867 5729 719 263 11 0 chr9 35014440 35014615 -82848012 - MIR SINE MIR -4 258 82 399 269 70 12 chr9 35014638 35014809 -82847818 + L2 LINE L2 2318 2498 -816 300 310 83 39 chr9 35015112 35015341 -82847286 + L2 LINE L2 3025 3263 -9 511 188 88 33 chr9 35015645 35015847 -82846780 + MER106B DNA MER1_type 30 1059 0 391 264 68 27 chr9 35017956 35018104 -82844523 - MIR SINE MIR -70 192 39 187 273 85 79 chr9 35019683 35019848 -82842779 + L2 LINE L2 2682 2847 -467 719 243 78 10 chr9 35019874 35020080 -82842547 - MIR SINE MIR 0 262 43 1783 161 0 56 chr9 35020151 35020323 -82842304 - AluJb SINE Alu -7 305 158 2305 107 0 3 chr9 35020323 35020621 -82842006 - AluSx SINE Alu -11 301 5 1783 161 0 56 chr9 35020621 35020771 -82841856 - AluJb SINE Alu -154 158 1 675 154 112 0 chr9 35020771 35020940 -82841687 + Charlie5 DNA MER1_type 2437 2624 0 2313 103 30 0 chr9 35021051 35021352 -82841275 + AluSx SINE Alu 1 310 -2 2289 94 13 3 chr9 35022120 35022419 -82840208 + AluSg SINE Alu 1 302 -8 390 208 115 49 chr9 35022550 35022733 -82839894 + MER102b DNA MER1_type 147 341 0 227 276 126 0 chr9 35022894 35022981 -82839646 - L3 LINE CR1 -550 1027 930 320 305 42 0 chr9 35023095 35023190 -82839437 - MIR SINE MIR -56 206 108 2062 120 50 0 chr9 35023322 35023605 -82839022 + AluSx SINE Alu 1 297 -15 733 251 62 19 chr9 35023605 35023816 -82838811 + MIR SINE MIR 29 248 -14 2050 146 0 0 chr9 35024236 35024530 -82838097 + AluSx SINE Alu 1 294 -18 237 300 113 0 chr9 35024541 35024621 -82838006 - MIR SINE MIR -149 113 25 265 360 18 0 chr9 35024635 35024746 -82837881 - MIR SINE MIR -65 143 31 625 289 261 11 chr9 35024982 35025706 -82836921 + L2 LINE L2 1842 2746 -568 2548 94 0 0 chr9 35025777 35026086 -82836541 - AluSq SINE Alu -2 311 3 186 133 0 0 chr9 35026859 35026889 -82835738 + (TCTG)n Simple_repeat Simple_repeat 1 30 0 425 247 54 0 chr9 35027142 35027235 -82835392 + L2 LINE L2 3215 3312 -1 188 260 0 0 chr9 35027245 35027295 -82835332 + L2 LINE L2 3184 3233 -39 2407 88 3 3 chr9 35027446 35027751 -82834876 + AluSp SINE Alu 1 305 -8 1942 147 20 17 chr9 35028110 35028410 -82834217 + AluJb SINE Alu 1 301 -11 1089 147 0 23 chr9 35030251 35030428 -82832199 - AluJb SINE Alu -2 310 138 270 336 23 0 chr9 35030446 35030577 -82832050 + (CCAA)n Simple_repeat Simple_repeat 3 136 0 236 281 162 81 chr9 35030577 35030603 -82832024 - L2 LINE L2 0 3272 3250 1973 143 0 20 chr9 35030603 35030903 -82831724 + AluSx SINE Alu 1 294 -18 236 281 162 81 chr9 35030903 35031061 -82831566 - L2 LINE L2 -22 3250 3073 343 332 70 64 chr9 35031465 35031805 -82830822 - L1MEd LINE L1 -4971 1148 797 204 97 0 0 chr9 35031910 35031941 -82830686 + (CA)n Simple_repeat Simple_repeat 2 32 0 627 118 0 0 chr9 35031956 35032049 -82830578 - AluS SINE Alu -219 94 2 405 94 62 0 chr9 35032049 35032113 -82830514 + MSTB LTR MaLR 359 426 0 2914 211 63 20 chr9 35032115 35032944 -82829683 + L1MC4a LINE L1 6944 7807 -1 514 148 61 31 chr9 35032963 35033107 -82829520 + L1MA9 LINE L1 6158 6290 -1 23 54 0 0 chr9 35033109 35033146 -82829481 + AT_rich Low_complexity Low_complexity 1 37 0 284 283 85 9 chr9 35033290 35033396 -82829231 + MIR3 SINE MIR 95 208 0 2484 103 0 0 chr9 35033564 35033876 -82828751 - AluSx SINE Alu 0 312 1 2104 116 0 30 chr9 35034998 35035299 -82827328 - AluJo SINE Alu -20 292 1 2337 150 46 9 chr9 35035304 35035757 -82826870 - L1MB3 LINE L1 0 6183 5714 1155 154 50 141 chr9 35036418 35036815 -82825812 + MLT1A1 LTR MaLR 1 361 -4 181 336 9 73 chr9 35036926 35037036 -82825591 - L2 LINE L2 -8 3305 3203 271 262 12 60 chr9 35037171 35037255 -82825372 + L2 LINE L2 3193 3272 0 612 213 138 31 chr9 35037370 35037530 -82825097 + MER20 DNA MER1_type 40 216 -3 205 275 14 29 chr9 35037633 35037702 -82824925 - L2 LINE L2 0 3313 3246 1826 163 14 0 chr9 35037702 35037997 -82824630 - AluJo SINE Alu -13 299 1 2130 110 62 0 chr9 35038323 35038614 -82824013 + AluSp SINE Alu 1 309 -4 1176 130 25 0 chr9 35039407 35039569 -82823058 - AluSg/x SINE Alu -18 292 127 290 326 137 13 chr9 35039694 35039921 -82822706 - L2 LINE L2 -814 2500 2246 452 259 146 69 chr9 35039964 35040293 -82822334 - L2 LINE L2 -74 3239 2857 2060 114 0 81 chr9 35040293 35040625 -82822002 + AluSx SINE Alu 1 305 -7 452 259 146 69 chr9 35040625 35040724 -82821903 - L2 LINE L2 -456 2857 2767 255 125 0 0 chr9 35041469 35041509 -82821118 + (CA)n Simple_repeat Simple_repeat 1 40 0 267 306 45 8 chr9 35041936 35042070 -82820557 - MIR3 SINE MIR -69 139 1 2193 102 14 7 chr9 35043520 35043813 -82818814 - AluSx SINE Alu -17 295 1 212 294 28 46 chr9 35044366 35044475 -82818152 - L2 LINE L2 -493 2821 2715 310 344 156 33 chr9 35045116 35045482 -82817145 + HAL1 LINE L1 882 1292 -1215 180 0 0 0 chr9 35045630 35045650 -82816977 + (TA)n Simple_repeat Simple_repeat 1 20 0 1356 167 5 14 chr9 35045721 35045943 -82816684 - AluJo SINE Alu -92 220 1 4578 175 14 3 chr9 35045943 35046833 -82815794 - L1 LINE L1 -815 5331 4433 1275 113 15 49 chr9 35046833 35046866 -82815761 + AluY SINE Alu 101 134 -177 2619 61 0 6 chr9 35046866 35047177 -82815450 + AluY SINE Alu 1 309 -2 1275 113 15 49 chr9 35047177 35047347 -82815280 + AluY SINE Alu 134 297 -14 2085 112 0 33 chr9 35047488 35047791 -82814836 + AluSc SINE Alu 1 293 -16 2213 94 0 17 chr9 35047797 35048119 -82814508 + AluSx SINE Alu 3 319 0 678 196 49 98 chr9 35048168 35048372 -82814255 - AluJo SINE Alu -117 195 2 481 97 43 11 chr9 35048374 35048467 -82814160 - LTR23 LTR ERV1 -132 305 210 1351 101 0 6 chr9 35048472 35048651 -82813976 - AluSg/x SINE Alu -6 304 127 216 0 0 0 chr9 35048854 35048878 -82813749 + (CA)n Simple_repeat Simple_repeat 2 25 0 1772 173 0 26 chr9 35049909 35050215 -82812412 - AluJo SINE Alu -14 298 1 186 43 0 0 chr9 35050219 35050242 -82812385 + (TG)n Simple_repeat Simple_repeat 1 23 0 2187 107 10 0 chr9 35050310 35050601 -82812026 - AluSg SINE Alu -16 294 1 1491 161 44 4 chr9 35050603 35050877 -82811750 - L1MB2 LINE L1 -42 6129 5845 1176 136 0 23 chr9 35050889 35051066 -82811561 - AluSq SINE Alu -10 303 131 1002 146 18 0 chr9 35051066 35051231 -82811396 - L1MB2 LINE L1 -347 5824 5657 1456 86 68 5 chr9 35051233 35051453 -82811174 - L1PA14 LINE L1 0 6161 5928 844 156 78 90 chr9 35051477 35051585 -82811042 + ORSL DNA AcHobo 23 131 -144 1986 154 3 0 chr9 35051585 35051883 -82810744 - AluSq SINE Alu -14 299 1 844 156 78 90 chr9 35051883 35052030 -82810597 + ORSL DNA AcHobo 131 275 0 2186 173 71 19 chr9 35052364 35052826 -82809801 + MER66B LTR ERV1 1 486 0 1738 99 0 0 chr9 35052854 35053077 -82809550 - AluSg/x SINE Alu -14 296 74 23 0 0 0 chr9 35053080 35053103 -82809524 + AT_rich Low_complexity Low_complexity 1 23 0 451 220 105 43 chr9 35053284 35053493 -82809134 - L1MC5 LINE L1 -386 7575 7354 1628 171 68 10 chr9 35053502 35053637 -82808990 + AluJb SINE Alu 1 127 -185 2513 62 0 0 chr9 35053637 35053929 -82808698 + AluY SINE Alu 2 293 -18 1628 171 68 10 chr9 35053929 35054086 -82808541 + AluJb SINE Alu 127 310 -2 2170 135 0 0 chr9 35054119 35054415 -82808212 + AluSx SINE Alu 1 296 -16 2256 110 0 13 chr9 35054417 35054727 -82807900 + AluSx SINE Alu 1 306 -6 2299 81 0 3 chr9 35054746 35055068 -82807559 - AluY SINE Alu 0 321 1 1737 130 72 0 chr9 35055072 35055349 -82807278 - AluJo SINE Alu -15 297 1 386 265 88 24 chr9 35055878 35056048 -82806579 + MIR SINE MIR 13 193 -69 670 180 16 8 chr9 35056887 35057015 -82805612 - AluJo SINE Alu -171 141 13 1962 130 0 11 chr9 35057052 35057336 -82805291 - AluSx SINE Alu -31 281 1 213 60 20 40 chr9 35057516 35057566 -82805061 + (CAAAAA)n Simple_repeat Simple_repeat 6 54 0 302 278 150 72 chr9 35058053 35058387 -82804240 + L2 LINE L2 2862 3221 -51 1804 125 114 0 chr9 35058458 35058738 -82803889 - AluSq SINE Alu 0 313 2 419 137 39 108 chr9 35058937 35058999 -82803628 - MER97c DNA MER1_type? -918 172 118 2137 41 107 7 chr9 35058999 35059270 -82803357 - AluY SINE Alu -13 298 1 419 137 39 108 chr9 35059270 35059309 -82803318 - MER97c DNA MER1_type? -972 118 78 278 149 164 30 chr9 35059314 35059381 -82803246 + U2 snRNA snRNA 1 76 -112 * 315 196 11 54 chr9 35059345 35059437 -82803190 - MER97b DNA MER1_type? -963 90 3 924 118 0 0 chr9 35060239 35060358 -82802269 - AluSq/x SINE Alu -194 119 1 390 265 88 24 chr9 35063618 35063788 -82798839 - MIR SINE MIR -69 193 13 268 130 19 19 chr9 35064317 35064371 -82798256 + Alu SINE Alu 1 54 -247 902 173 6 46 chr9 35064668 35064841 -82797786 + FRAM SINE Alu 1 166 0 238 242 45 15 chr9 35065702 35065768 -82796859 - L2 LINE L2 -6 3307 3240 256 324 97 14 chr9 35066036 35066181 -82796446 - MIR SINE MIR 0 262 106 238 302 0 0 chr9 35066288 35066351 -82796276 + MIR SINE MIR 68 130 -132 489 227 114 0 chr9 35066528 35066660 -82795967 + MIR SINE MIR 90 236 -26 21 0 0 0 chr9 35066830 35066851 -82795776 + AT_rich Low_complexity Low_complexity 1 21 0 1921 111 61 14 chr9 35067342 35067621 -82795006 + AluSg SINE Alu 2 293 -17 189 68 68 0 chr9 35068415 35068459 -82794168 + (TA)n Simple_repeat Simple_repeat 1 47 0 337 233 23 12 chr9 35068460 35068546 -82794081 - L1MC4 LINE L1 -1339 6703 6617 2175 117 3 3 chr9 35068942 35069240 -82793387 + AluSx SINE Alu 1 298 -14 323 183 0 14 chr9 35069241 35069312 -82793315 + MER53 DNA DNA 120 189 0 2593 68 0 0 chr9 35069353 35069660 -82792967 + AluY SINE Alu 1 307 -4 2272 121 0 3 chr9 35070191 35070504 -82792123 + AluSq SINE Alu 1 312 -1 2013 134 7 3 chr9 35070848 35071166 -82791461 + AluSx SINE Alu 1 319 0 1796 125 0 0 chr9 35071474 35071722 -82790905 + AluSx SINE Alu 40 287 -25 187 239 22 0 chr9 35071813 35071859 -82790768 - MIR3 SINE MIR -11 197 151 1929 142 0 10 chr9 35072002 35072297 -82790330 - AluSx SINE Alu -20 292 1 216 0 0 0 chr9 35072463 35072487 -82790140 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2073 154 0 0 chr9 35072517 35072822 -82789805 - AluSx SINE Alu -7 305 1 1165 127 0 0 chr9 35072862 35073019 -82789608 + FRAM SINE Alu 5 161 -15 2306 68 3 10 chr9 35073696 35073988 -82788639 - AluSc SINE Alu -19 290 1 429 197 0 0 chr9 35074315 35074391 -82788236 - L2 LINE L2 -10 3303 3228 21 0 0 0 chr9 35074479 35074500 -82788127 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 35075107 35075128 -82787499 + AT_rich Low_complexity Low_complexity 1 21 0 2339 101 0 3 chr9 35075447 35075812 -82786815 + AluSg SINE Alu 1 364 0 1603 192 3 31 chr9 35075832 35076150 -82786477 + AluJo SINE Alu 1 309 -3 1617 205 0 7 chr9 35076212 35076509 -82786118 + AluJb SINE Alu 1 295 -17 986 227 14 18 chr9 35076827 35077047 -82785580 - MER20 DNA MER1_type 0 219 1 2401 74 7 7 chr9 35077454 35077763 -82784864 + AluSc SINE Alu 1 309 0 2238 116 0 13 chr9 35078901 35079212 -82783415 + AluSg SINE Alu 1 307 -3 2107 130 3 0 chr9 35079478 35079770 -82782857 + AluSq SINE Alu 1 293 -20 876 121 0 16 chr9 35079841 35079965 -82782662 - FLAM_C SINE Alu -16 127 6 407 277 125 0 chr9 35080914 35081098 -82781529 - L1M4 LINE L1 -1890 4256 4050 44 46 0 0 chr9 35081137 35081202 -82781425 + AT_rich Low_complexity Low_complexity 1 65 0 1699 179 145 39 chr9 35081265 35081673 -82780954 - LTR32 LTR ERVL -7 464 14 302 213 64 85 chr9 35081766 35081800 -82780827 + L1ME LINE L1 5380 5413 -751 2043 141 3 0 chr9 35081800 35082097 -82780530 + AluSx SINE Alu 1 298 -14 302 213 64 85 chr9 35082097 35082203 -82780424 + L1ME LINE L1 5413 5517 -647 344 279 61 20 chr9 35082598 35082745 -82779882 - MIR SINE MIR -51 211 59 1606 177 45 10 chr9 35083738 35084026 -82778601 + AluJo SINE Alu 1 298 -14 6181 129 19 16 chr9 35084547 35085514 -82777113 - LTR5 LTR ERVK 0 969 1 24 32 0 0 chr9 35085902 35085933 -82776694 + AT_rich Low_complexity Low_complexity 1 31 0 303 296 15 12 chr9 35086265 35086420 -82776207 + L1M4 LINE L1 3767 3923 -2223 1566 160 31 35 chr9 35086485 35086772 -82775855 - AluJo SINE Alu -26 286 1 1998 153 3 6 chr9 35086845 35087158 -82775469 + AluSx SINE Alu 1 312 0 203 61 30 0 chr9 35087434 35087467 -82775160 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1878 125 84 0 chr9 35087589 35087876 -82774751 + AluSq SINE Alu 1 311 -2 2008 156 18 0 chr9 35087914 35088248 -82774379 - L1PB4 LINE L1 -2 6154 5815 266 189 27 0 chr9 35088252 35088326 -82774301 - L1PA16 LINE L1 -9 6156 6082 * 703 132 26 0 chr9 35088313 35088427 -82774200 - L1PB4 LINE L1 -327 5829 5713 404 158 44 70 chr9 35088435 35088549 -82774078 + L1PB4 LINE L1 5621 5731 -425 312 115 0 19 chr9 35088592 35088644 -82773983 + Alu SINE Alu 249 299 -2 1361 296 29 12 chr9 35088644 35089307 -82773320 + L1M4 LINE L1 3294 3967 -2179 621 239 72 61 chr9 35089304 35089418 -82773209 + L1MEc LINE L1 1905 2016 -4380 * 2441 84 0 0 chr9 35089418 35089716 -82772911 + AluY SINE Alu 1 298 -13 258 32 0 0 chr9 35089716 35089747 -82772880 + (TA)n Simple_repeat Simple_repeat 1 31 0 621 239 72 61 chr9 35089747 35089784 -82772843 + L1MEc LINE L1 2016 2051 -4345 2199 97 10 13 chr9 35089784 35090082 -82772545 - AluSx SINE Alu -15 297 1 621 239 72 61 chr9 35090082 35090288 -82772339 + L1MEc LINE L1 2051 2268 -4128 1389 192 7 46 chr9 35090300 35090581 -82772046 + AluJo SINE Alu 13 282 -30 621 286 70 36 chr9 35090584 35090940 -82771687 + L1MEc LINE L1 2211 2578 -3637 629 200 19 76 chr9 35090958 35091168 -82771459 + L1MEc LINE L1 2757 2954 -3261 3151 189 66 14 chr9 35091224 35091924 -82770703 - L1MB4 LINE L1 -40 6140 5405 2277 281 43 14 chr9 35091936 35092924 -82769703 - L1M4 LINE L1 -2647 3499 2483 578 190 121 46 chr9 35092910 35093084 -82769543 - L1MA9 LINE L1 0 6312 6126 * 34 42 0 0 chr9 35095404 35095452 -82767175 + AT_rich Low_complexity Low_complexity 1 48 0 27 29 0 0 chr9 35095483 35095517 -82767110 + AT_rich Low_complexity Low_complexity 1 34 0 454 278 62 6 chr9 35095772 35095948 -82766679 + L1ME LINE L1 5491 5676 -445 21 57 0 0 chr9 35096225 35096260 -82766367 + AT_rich Low_complexity Low_complexity 1 35 0 231 61 0 0 chr9 35096977 35097010 -82765617 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2281 91 0 0 chr9 35097012 35097297 -82765330 - AluSg SINE Alu -25 285 1 1516 208 3 7 chr9 35097695 35097989 -82764638 + AluJo SINE Alu 1 293 -19 533 295 111 43 chr9 35097991 35098229 -82764398 - MIR SINE MIR -8 254 4 244 336 46 30 chr9 35099858 35099989 -82762638 - MER5B DNA MER1_type 0 178 46 450 132 0 0 chr9 35100002 35100070 -82762557 + FRAM/FAM SINE Alu 1 68 -107 698 79 0 30 chr9 35100070 35100171 -82762456 + AluY SINE Alu 30 127 -184 189 0 0 0 chr9 35100205 35100226 -82762401 + (A)n Simple_repeat Simple_repeat 1 21 0 387 282 40 16 chr9 35101221 35101345 -82761282 + MER102a DNA MER1_type 203 329 -1 2284 110 0 0 chr9 35101630 35101929 -82760698 + AluY SINE Alu 1 299 -12 21 36 0 0 chr9 35102168 35102196 -82760431 + AT_rich Low_complexity Low_complexity 1 28 0 230 313 170 9 chr9 35102711 35102823 -82759804 - L2 LINE L2 0 3272 3143 408 88 0 0 chr9 35103543 35103600 -82759027 + (TTA)n Simple_repeat Simple_repeat 3 59 0 195 100 0 0 chr9 35103601 35103631 -82758996 + (TTG)n Simple_repeat Simple_repeat 2 31 0 352 206 243 0 chr9 35104505 35104612 -82758015 - AluJb SINE Alu -169 133 1 2274 77 0 7 chr9 35104952 35105264 -82757363 - AluY SINE Alu 0 310 1 308 88 47 53 chr9 35105343 35105514 -82757113 + (TTATA)n Simple_repeat Simple_repeat 5 174 0 196 324 64 52 chr9 35106131 35106304 -82756323 - MIR SINE MIR -47 215 41 2258 114 0 0 chr9 35106692 35106989 -82755638 + AluSx SINE Alu 1 297 -15 40 21 0 0 chr9 35107025 35107072 -82755555 + AT_rich Low_complexity Low_complexity 1 47 0 2168 193 9 11 chr9 35107332 35107767 -82754860 - Tigger2a DNA MER2_type 0 434 1 1984 125 17 0 chr9 35108134 35108422 -82754205 + AluSx SINE Alu 1 293 -19 26 0 0 0 chr9 35108487 35108513 -82754114 + AT_rich Low_complexity Low_complexity 1 26 0 244 217 67 0 chr9 35109438 35109498 -82753129 - MLT1L LTR MaLR -6 609 546 450 284 118 48 chr9 35109543 35109730 -82752897 - MLT1L LTR MaLR -167 448 229 2061 142 0 0 chr9 35109730 35110025 -82752602 - AluSc SINE Alu -14 295 1 450 284 118 48 chr9 35110025 35110150 -82752477 - MLT1L LTR MaLR -386 229 114 835 195 0 161 chr9 35110326 35110587 -82752040 - MER58A DNA MER1_type -2 222 4 207 167 0 0 chr9 35110853 35110895 -82751732 + A-rich Low_complexity Low_complexity 1 42 0 1063 239 39 28 chr9 35111099 35111383 -82751244 + AluJo SINE Alu 2 288 -14 186 103 0 0 chr9 35111391 35111420 -82751207 + (TAAAA)n Simple_repeat Simple_repeat 3 31 0 193 287 147 39 chr9 35111646 35111775 -82750852 + L2 LINE L2 2912 3054 -218 205 196 0 22 chr9 35111803 35111849 -82750778 + L2 LINE L2 3264 3308 -5 1555 221 30 0 chr9 35112048 35112351 -82750276 - AluJo SINE Alu 0 312 1 2275 100 3 0 chr9 35114235 35114525 -82748102 + AluSp SINE Alu 3 293 -20 210 375 9 18 chr9 35116435 35116547 -82746080 + MIR3 SINE MIR 88 198 -10 191 164 0 148 chr9 35116998 35117059 -82745568 + MIR SINE MIR 175 226 -36 396 0 0 0 chr9 35117359 35117403 -82745224 + (TG)n Simple_repeat Simple_repeat 2 45 0 798 213 74 27 chr9 35118643 35118901 -82743726 + L1MB8 LINE L1 5903 6172 -6 410 306 54 0 chr9 35119685 35119832 -82742795 - L2 LINE L2 -438 2876 2722 2155 205 13 27 chr9 35120906 35121433 -82741194 - L1MB8 LINE L1 -6 6172 5653 220 341 47 0 chr9 35122201 35122286 -82740341 + MER91C DNA MER1_type 18 106 -34 821 263 30 0 chr9 35122520 35122718 -82739909 - MIR SINE MIR -24 238 35 1543 181 3 24 chr9 35122761 35123054 -82739573 + AluJo SINE Alu 6 292 -20 2091 137 20 0 chr9 35123473 35123779 -82738848 + AluSx SINE Alu 1 312 0 499 83 48 0 chr9 35123805 35123889 -82738738 + GA-rich Low_complexity Low_complexity 2 89 0 1003 139 0 7 chr9 35124198 35124349 -82738278 + AluSg SINE Alu 1 150 -160 592 248 32 50 chr9 35124349 35124631 -82737996 - LTR4 LTR ERV1 -2 594 318 22 0 0 0 chr9 35125852 35125874 -82736753 + AT_rich Low_complexity Low_complexity 1 22 0 2000 137 38 0 chr9 35125935 35126227 -82736400 - AluSg SINE Alu -6 304 2 369 129 0 14 chr9 35126503 35126573 -82736054 + MER34C LTR ERV1 423 491 -94 2088 144 6 3 chr9 35127184 35127496 -82735131 + AluSq SINE Alu 1 313 0 3141 121 29 0 chr9 35127884 35128371 -82734256 - L1PA10 LINE L1 -11 6157 5657 2105 229 21 81 chr9 35128434 35129233 -82733394 - MER4E LTR ERV1 -3 776 26 21 36 0 0 chr9 35129329 35129357 -82733270 + AT_rich Low_complexity Low_complexity 1 28 0 1008 221 75 12 chr9 35129467 35129788 -82732839 - L1MB8 LINE L1 -5 6173 5833 1920 156 63 14 chr9 35129788 35130217 -82732410 - MER61C LTR ERV1 0 434 1 2413 192 34 39 chr9 35130217 35130356 -82732271 - L1MB8 LINE L1 -342 5836 5698 2215 96 0 20 chr9 35130356 35130649 -82731978 + AluSg SINE Alu 1 287 -23 2413 192 34 39 chr9 35130649 35131584 -82731043 - L1MB8 LINE L1 -480 5698 4766 661 286 116 29 chr9 35132918 35133291 -82729336 - MLT1G1 LTR MaLR -34 561 45 1141 161 57 36 chr9 35133327 35133607 -82729020 - L1MA5 LINE L1 -6 6294 6009 1236 220 27 8 chr9 35133680 35133939 -82728688 - AluJo SINE Alu -48 264 1 2962 194 50 28 chr9 35133940 35135034 -82727593 - L1MA5 LINE L1 -354 5946 4808 1557 189 7 33 chr9 35135147 35135449 -82727178 - AluJo SINE Alu -17 295 2 406 231 0 0 chr9 35137896 35138000 -82724627 - L1MA9 LINE L1 -46 6266 6163 2180 124 10 0 chr9 35138939 35139237 -82723390 - AluSg SINE Alu -9 301 1 1271 119 0 0 chr9 35139429 35139597 -82723030 + AluSq SINE Alu 1 168 -145 2661 151 26 29 chr9 35139601 35140145 -82722482 + L1PA16 LINE L1 5624 6165 -1 2313 107 0 0 chr9 35140313 35140613 -82722014 - AluSc SINE Alu -9 300 1 24 32 0 0 chr9 35140891 35140922 -82721705 + AT_rich Low_complexity Low_complexity 1 31 0 238 343 111 57 chr9 35141287 35141796 -82720831 + L2 LINE L2 2735 3267 -5 821 188 41 9 chr9 35142433 35142651 -82719976 - L1MC4 LINE L1 -681 7361 7137 696 254 22 0 chr9 35142693 35142874 -82719753 - L1MC4 LINE L1 -1039 7003 6819 257 211 0 28 chr9 35143561 35143632 -82718995 - HSAT5 Satellite Satellite -1 85 17 283 243 14 0 chr9 35144397 35144467 -82718160 + (CA)n Simple_repeat Simple_repeat 2 72 0 1573 138 83 39 chr9 35144699 35145135 -82717492 - SN5 Other centromeric 0 455 1 690 211 96 20 chr9 35147056 35147255 -82715372 + MSTA LTR MaLR 155 368 -60 1387 121 26 0 chr9 35147284 35147516 -82715111 + MSTA-int LTR MaLR 13 250 -1401 1058 188 37 12 chr9 35147513 35147758 -82714869 + MSTA-int LTR MaLR 1401 1651 0 * 1400 222 27 29 chr9 35147758 35148132 -82714495 + MSTA LTR MaLR 1 373 -55 424 241 147 1 chr9 35148150 35148303 -82714324 - MST-int LTR MaLR -959 670 465 * 440 226 0 0 chr9 35148300 35148402 -82714225 + MSTA-int LTR MaLR 28 129 -1522 301 257 0 30 chr9 35148425 35148526 -82714101 + (GGGTG)n Simple_repeat Simple_repeat 3 100 0 273 130 22 0 chr9 35148533 35148579 -82714048 + MSTA-int LTR MaLR 921 967 -613 * 422 186 54 47 chr9 35148567 35148696 -82713931 - THE1-int LTR MaLR -389 1191 1062 1090 207 72 7 chr9 35148730 35149022 -82713605 + MSTA LTR MaLR 66 376 -52 462 221 148 10 chr9 35149038 35149190 -82713437 - MST-int LTR MaLR -963 661 466 5417 229 76 19 chr9 35149192 35150724 -82711903 + MSTA-int LTR MaLR 32 1651 0 259 220 88 11 chr9 35150726 35150817 -82711810 + MSTA LTR MaLR 3 100 -328 299 258 112 0 chr9 35150865 35150954 -82711673 + MSTA LTR MaLR 57 155 -273 1254 229 3 44 chr9 35150961 35151302 -82711325 + MSTA-int LTR MaLR 1318 1644 -7 360 188 20 20 chr9 35151312 35151413 -82711214 + MSTA LTR MaLR 4 104 -324 272 196 18 0 chr9 35151491 35151547 -82711080 + THE1-int LTR MaLR 911 967 -613 * 604 210 185 42 chr9 35151545 35151783 -82710844 - THE1-int LTR MaLR -402 1178 907 1081 197 82 24 chr9 35151787 35152081 -82710546 + MSTA LTR MaLR 66 376 -52 356 244 168 0 chr9 35152116 35152247 -82710380 - MST-int LTR MaLR -992 659 507 * 6358 215 53 17 chr9 35152244 35153809 -82708818 + MSTA-int LTR MaLR 27 1648 -3 372 237 10 0 chr9 35153811 35153908 -82708719 + MSTA LTR MaLR 3 100 -328 371 198 108 18 chr9 35153953 35154064 -82708563 + MSTA LTR MaLR 58 178 -250 1266 214 6 42 chr9 35154064 35154400 -82708227 + MSTA-int LTR MaLR 1328 1651 0 425 184 11 0 chr9 35154400 35154487 -82708140 + MSTA LTR MaLR 1 88 -340 272 196 18 0 chr9 35154593 35154649 -82707978 + THE1-int LTR MaLR 911 967 -613 * 840 201 189 20 chr9 35154637 35154881 -82707746 - THE1-int LTR MaLR -389 1191 907 865 250 73 8 chr9 35154908 35155168 -82707459 + MSTA LTR MaLR 98 374 -54 502 189 156 10 chr9 35155186 35155337 -82707290 - MST-int LTR MaLR -963 661 466 6254 211 50 24 chr9 35155339 35156918 -82705709 + MSTA-int LTR MaLR 32 1651 0 389 232 10 0 chr9 35156918 35157017 -82705610 + MSTA LTR MaLR 1 100 -328 308 203 41 106 chr9 35157039 35157162 -82705465 + MSTA LTR MaLR 57 171 -257 918 252 16 38 chr9 35157171 35157485 -82705142 + MSTA-int LTR MaLR 1345 1651 0 406 200 11 0 chr9 35157489 35157579 -82705048 + MSTA LTR MaLR 5 95 -333 747 198 194 22 chr9 35157732 35157964 -82704663 - THE1-int LTR MaLR -402 1178 907 916 243 56 10 chr9 35157968 35158256 -82704371 + MSTA LTR MaLR 76 376 -52 463 219 161 7 chr9 35158290 35158427 -82704200 - MST-int LTR MaLR -990 661 504 * 5976 215 56 30 chr9 35158422 35160005 -82702622 + MSTA-int LTR MaLR 28 1651 0 347 247 10 0 chr9 35160007 35160104 -82702523 + MSTA LTR MaLR 3 100 -328 329 262 107 0 chr9 35160149 35160252 -82702375 + MSTA LTR MaLR 58 171 -257 1089 258 0 32 chr9 35160264 35160578 -82702049 + MSTA-int LTR MaLR 1347 1650 -1 402 198 10 0 chr9 35160579 35160675 -82701952 + MSTA LTR MaLR 1 97 -331 280 177 65 0 chr9 35160766 35160828 -82701799 + THE1-int LTR MaLR 902 967 -613 * 898 176 189 21 chr9 35160826 35161059 -82701568 - THE1-int LTR MaLR -402 1178 907 978 224 86 10 chr9 35161065 35161355 -82701272 + MSTA LTR MaLR 65 376 -52 437 225 159 14 chr9 35161389 35161527 -82701100 - MST-int LTR MaLR -990 661 504 * 5733 232 49 30 chr9 35161522 35163116 -82699511 + MSTA-int LTR MaLR 28 1651 0 392 229 10 0 chr9 35163116 35163212 -82699415 + MSTA LTR MaLR 1 97 -331 353 232 104 16 chr9 35163263 35163388 -82699239 + MSTA LTR MaLR 60 195 -233 1071 194 83 17 chr9 35163391 35163679 -82698948 + MSTA-int LTR MaLR 1345 1651 0 435 191 32 0 chr9 35163679 35163773 -82698854 + MSTA LTR MaLR 1 97 -331 200 235 12 49 chr9 35163774 35163855 -82698772 + (GGGTG)n Simple_repeat Simple_repeat 5 82 0 255 152 39 18 chr9 35163870 35163926 -82698701 + MSTA-int LTR MaLR 921 967 -613 * 738 222 184 21 chr9 35163924 35164158 -82698469 - THE1-int LTR MaLR -402 1178 907 797 231 88 13 chr9 35164178 35164416 -82698211 + MSTA LTR MaLR 96 351 -77 412 241 165 8 chr9 35164456 35164589 -82698038 - MST-int LTR MaLR -994 657 504 * 5796 232 50 30 chr9 35164584 35166175 -82696452 + MSTA-int LTR MaLR 28 1651 0 325 229 83 21 chr9 35166269 35166365 -82696262 + MSTA LTR MaLR 58 159 -269 1453 200 0 41 chr9 35166375 35166720 -82695907 + MSTA-int LTR MaLR 1321 1651 0 456 189 11 0 chr9 35166720 35166815 -82695812 + MSTA LTR MaLR 1 96 -330 271 179 18 0 chr9 35166908 35166964 -82695663 + THE1-int LTR MaLR 911 967 -613 * 640 236 190 21 chr9 35166952 35167194 -82695433 - THE1-int LTR MaLR -389 1191 909 583 258 81 10 chr9 35167200 35167398 -82695229 + MSTA LTR MaLR 76 287 -141 286 195 20 27 chr9 35167388 35167474 -82695153 - HSAT5 Satellite Satellite -1 85 1 * 336 232 0 12 chr9 35167736 35167818 -82694809 - HSAT5 Satellite Satellite -3 83 3 450 116 6 24 chr9 35168046 35168140 -82694487 - HSAT5 Satellite Satellite -3 92 1 288 0 0 0 chr9 35169896 35169928 -82692699 + (TCTCCC)n Simple_repeat Simple_repeat 2 33 0 7669 44 2 33 chr9 35169928 35171515 -82691112 + SVA Other Other 1 1382 -4 517 295 118 31 chr9 35174334 35174622 -82688005 + L2 LINE L2 2998 3310 -3 1501 184 226 3 chr9 35174641 35174983 -82687644 + LTR46 LTR ERV1 1 436 -24 609 27 0 0 chr9 35174983 35175058 -82687569 + (TG)n Simple_repeat Simple_repeat 2 76 0 1501 184 226 3 chr9 35175058 35175091 -82687536 + LTR46 LTR ERV1 436 460 0 417 289 18 9 chr9 35175102 35175216 -82687411 - MIR SINE MIR -116 146 32 1928 162 30 0 chr9 35175396 35175699 -82686928 - AluSx SINE Alu 0 312 1 701 139 0 10 chr9 35175724 35175825 -82686802 - AluSg/x SINE Alu -18 294 195 1621 194 15 9 chr9 35175825 35176160 -82686467 + L1MA9 LINE L1 5819 6155 -157 973 103 0 7 chr9 35176164 35176279 -82686348 + AluSg/x SINE Alu 172 287 -25 751 122 61 14 chr9 35176279 35176426 -82686201 + L1MA9 LINE L1 6159 6312 0 973 103 0 7 chr9 35176426 35176446 -82686181 + AluSg/x SINE Alu 287 306 -6 2370 95 0 10 chr9 35176663 35176968 -82685659 - AluY SINE Alu -9 302 1 1383 281 77 47 chr9 35177289 35178345 -82684282 + L2 LINE L2 2224 3311 -2 1898 228 49 29 chr9 35178960 35179643 -82682984 + L1M3a LINE L1 771 1523 -4780 1646 231 109 62 chr9 35179671 35180599 -82682028 + L1ME3A LINE L1 4362 5332 -814 453 36 0 0 chr9 35180641 35180696 -82681931 + (CA)n Simple_repeat Simple_repeat 2 56 0 396 207 37 0 chr9 35180869 35180951 -82681676 + MLT1E2 LTR MaLR 106 190 -436 1296 215 146 7 chr9 35180971 35181376 -82681251 - L1ME LINE L1 -370 5794 5334 305 241 108 0 chr9 35182179 35182262 -82680365 - MIR SINE MIR -109 153 62 485 326 32 75 chr9 35184125 35184591 -82678036 - L1MEc LINE L1 -3875 2521 2076 1670 291 55 15 chr9 35185217 35185804 -82676823 - MLT2E LTR ERVL -18 610 1 370 236 0 0 chr9 35185812 35185884 -82676743 - Tigger5 DNA MER2_type 0 2323 2252 269 161 0 54 chr9 35185879 35185935 -82676692 + Tigger5 DNA MER2_type 2267 2319 -4 * 311 174 145 14 chr9 35185936 35186005 -82676622 - Tigger5 DNA MER2_type -2245 78 1 2336 79 3 3 chr9 35187065 35187356 -82675271 - AluSg SINE Alu -14 296 6 201 404 43 11 chr9 35188454 35188548 -82674079 + MIR3 SINE MIR 6 102 -106 732 266 95 61 chr9 35189144 35189791 -82672836 + L1ME3A LINE L1 5316 5954 -216 1010 224 9 9 chr9 35189841 35190051 -82672576 - MER63A DNA MER1_type 0 210 1 387 0 0 0 chr9 35191298 35191341 -82671286 + (CA)n Simple_repeat Simple_repeat 2 44 0 2487 62 0 0 chr9 35191392 35191681 -82670946 - AluY SINE Alu -22 289 1 2405 189 39 20 chr9 35192549 35193058 -82669569 - MER34 LTR ERV1 0 542 24 250 266 70 113 chr9 35193158 35193459 -82669168 - L2 LINE L2 -806 2508 2221 1332 108 0 5 chr9 35195028 35195213 -82667414 + AluSg/x SINE Alu 115 298 -14 2247 69 28 14 chr9 35195219 35195508 -82667119 + AluSx SINE Alu 5 297 -15 444 313 85 28 chr9 35195513 35195786 -82666841 + L1ME3A LINE L1 4497 4753 -1417 2639 48 0 3 chr9 35195786 35196096 -82666531 + AluY SINE Alu 1 309 -2 444 313 85 28 chr9 35196096 35197197 -82665430 + L1ME3A LINE L1 4753 5951 -219 1990 122 14 0 chr9 35197486 35197795 -82664832 + AluSx SINE Alu 1 312 0 5131 32 3 2 chr9 35197936 35198535 -82664092 + L1PA7 LINE L1 5545 6144 -10 253 302 7 43 chr9 35199918 35200057 -82662570 - L1ME1 LINE L1 -25 6141 6008 * 270 212 35 0 chr9 35200048 35200133 -82662494 - L1M4 LINE L1 -1637 4509 4422 414 225 50 33 chr9 35200626 35200746 -82661881 + L1MC1 LINE L1 6212 6333 0 216 184 0 20 chr9 35201187 35201236 -82661391 + (ATG)n Simple_repeat Simple_repeat 1 48 0 968 201 78 107 chr9 35201496 35202019 -82660608 + Charlie4a DNA MER1_type 1 508 0 306 169 0 0 chr9 35202173 35202238 -82660389 + CT-rich Low_complexity Low_complexity 2 66 0 1860 23 0 0 chr9 35202391 35202609 -82660018 + L1PA4 LINE L1 5930 6147 -8 663 289 95 9 chr9 35202830 35203062 -82659565 - MIR SINE MIR 0 262 11 204 280 0 0 chr9 35203368 35203418 -82659209 + MIR SINE MIR 96 145 -63 278 238 83 48 chr9 35204349 35204433 -82658194 - L2 LINE L2 -299 2973 2887 373 271 39 48 chr9 35205532 35205739 -82656888 + L1ME3A LINE L1 4890 5094 -1052 24 0 0 0 chr9 35205920 35205944 -82656683 + AT_rich Low_complexity Low_complexity 1 24 0 817 285 86 22 chr9 35206037 35206585 -82656042 + L1ME3A LINE L1 5369 5951 -219 412 361 31 21 chr9 35210679 35211061 -82651566 + L1MEc LINE L1 70 455 -5941 242 106 21 0 chr9 35211375 35211422 -82651205 + (TA)n Simple_repeat Simple_repeat 2 49 0 351 301 9 14 chr9 35211443 35211659 -82650968 + L1MEc LINE L1 718 932 -5273 1140 249 75 100 chr9 35211670 35212002 -82650625 + L1M4 LINE L1 3221 3560 -2586 9185 146 20 9 chr9 35212002 35214546 -82648081 + L1PA10 LINE L1 3581 6157 -11 1140 249 75 100 chr9 35214546 35215590 -82647037 + L1M4 LINE L1 3560 4563 -1583 596 259 26 22 chr9 35215585 35215817 -82646810 + L1M4 LINE L1 4901 5133 -1013 * 2580 35 0 16 chr9 35216654 35216970 -82645657 + AluY SINE Alu 1 311 0 257 262 54 40 chr9 35217027 35217176 -82645451 + L1MC5 LINE L1 7781 7931 -30 3363 121 40 9 chr9 35217272 35217849 -82644778 + LTR1B LTR ERV1 1 595 -231 589 195 0 16 chr9 35217862 35217990 -82644637 + LTR1B LTR ERV1 701 826 0 289 326 22 56 chr9 35220611 35220789 -82641838 + L2 LINE L2 2257 2428 -886 582 261 36 40 chr9 35220957 35221179 -82641448 - LTR16A LTR ERVL -116 334 114 199 388 20 13 chr9 35221227 35221379 -82641248 + L2 LINE L2 2544 2696 -618 3919 143 7 36 chr9 35221603 35222300 -82640327 - L1PA16 LINE L1 -3 6163 5487 322 145 0 0 chr9 35222466 35222528 -82640099 - L1PA15 LINE L1 -1 6164 6103 5816 168 21 7 chr9 35222544 35223777 -82638850 - L1PA15 LINE L1 -334 5831 4569 8894 106 18 5 chr9 35223777 35225047 -82637580 + HSMAR1 DNA Mariner 1 1287 0 5816 168 21 7 chr9 35225047 35225556 -82637071 - L1PA15 LINE L1 -1596 4569 4068 22 35 0 0 chr9 35229439 35229468 -82633159 + AT_rich Low_complexity Low_complexity 1 29 0 1117 116 111 0 chr9 35229496 35229685 -82632942 - MER2 DNA MER2_type -135 210 1 255 222 0 111 chr9 35231355 35231454 -82631173 - MIR SINE MIR 0 262 175 208 287 69 46 chr9 35231495 35231582 -82631045 + L2 LINE L2 2947 3035 -237 1790 163 48 15 chr9 35233868 35234200 -82628427 - MER2 DNA MER2_type -1 343 1 1263 255 30 34 chr9 35234968 35235191 -82627436 - L1MB8 LINE L1 -3 6175 5953 2111 93 61 4 chr9 35235191 35235471 -82627156 - AluY SINE Alu -15 296 1 1263 255 30 34 chr9 35235471 35235745 -82626882 - L1MB8 LINE L1 -225 5953 5680 37575 75 6 8 chr9 35235756 35236795 -82625832 + L1PA6 LINE L1 11 1051 -5103 10278 51 72 8 chr9 35236795 35238095 -82624532 + SVA Other Other 1 1383 -3 37575 75 6 8 chr9 35238095 35243214 -82619413 + L1PA6 LINE L1 1051 6154 0 1303 232 78 33 chr9 35243223 35244070 -82618557 - L1MB8 LINE L1 -481 5685 4806 21 71 0 0 chr9 35244070 35244112 -82618515 + AT_rich Low_complexity Low_complexity 1 42 0 252 0 0 0 chr9 35246735 35246763 -82615864 + (CCG)n Simple_repeat Simple_repeat 1 28 0 218 280 11 0 chr9 35246851 35246944 -82615683 + (CCG)n Simple_repeat Simple_repeat 1 94 0 22 35 0 0 chr9 35247037 35247066 -82615561 + GC_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr9 35247095 35247115 -82615512 + (CCGGG)n Simple_repeat Simple_repeat 4 23 0 4438 251 65 39 chr9 35247245 35248524 -82614103 - L1MB8 LINE L1 -1351 4795 3430 553 270 69 29 chr9 35248524 35248728 -82613899 + MER58C DNA MER1_type 3 214 -1 4438 251 65 39 chr9 35248728 35249727 -82612900 - L1MB8 LINE L1 -2716 3430 2458 1244 272 48 21 chr9 35249775 35250401 -82612226 + L1M4c LINE L1 1202 1989 -4564 1088 210 45 38 chr9 35250469 35250868 -82611759 + MLT2A2 LTR ERVL 134 546 -8 1285 174 4 0 chr9 35250868 35251109 -82611518 + L1MA8 LINE L1 5547 5788 -503 212 89 0 67 chr9 35251111 35251156 -82611471 + (TATATG)n Simple_repeat Simple_repeat 3 44 0 2278 130 47 71 chr9 35251177 35251683 -82610944 + L1MA8 LINE L1 5793 6286 -5 24 0 0 0 chr9 35253315 35253339 -82609288 + AT_rich Low_complexity Low_complexity 1 24 0 194 350 68 68 chr9 35253365 35253571 -82609056 + L2 LINE L2 2804 3009 -263 290 273 73 18 chr9 35253693 35253803 -82608824 + L2 LINE L2 3193 3308 -5 793 222 6 0 chr9 35253907 35254074 -82608553 + MLT1D LTR MaLR 1 168 -337 197 359 61 85 chr9 35254103 35254315 -82608312 + L2 LINE L2 3028 3234 -38 200 288 96 27 chr9 35254328 35254401 -82608226 + L2 LINE L2 3193 3270 -43 1041 192 43 13 chr9 35254411 35254645 -82607982 + MLT1D LTR MaLR 179 419 -86 632 268 98 69 chr9 35254831 35255183 -82607444 + L1 LINE L1 3342 3713 -2433 2187 105 0 3 chr9 35255183 35255479 -82607148 + AluY SINE Alu 1 295 -16 632 268 98 69 chr9 35255479 35255607 -82607020 + L1 LINE L1 3713 3836 -2310 257 221 39 77 chr9 35256112 35256216 -82606411 + L2 LINE L2 3193 3292 -21 3713 155 56 3 chr9 35257085 35257764 -82604863 + MER72 LTR ERV1 8 722 0 327 287 98 14 chr9 35258288 35258431 -82604196 + MIR SINE MIR 91 245 -17 671 273 59 5 chr9 35258497 35258717 -82603910 - MIR SINE MIR -19 243 12 2700 153 103 0 chr9 35258729 35259205 -82603422 - LTR45 LTR ERV1 0 525 1 1409 128 200 8 chr9 35260745 35261010 -82601617 + AluSg1 SINE Alu 2 311 0 430 346 5 5 chr9 35261632 35261820 -82600807 - HERVE LTR ERV1 -526 7594 7407 604 358 38 16 chr9 35261951 35262401 -82600226 - HERVE LTR ERV1 -1964 5158 4699 304 299 46 31 chr9 35262824 35263154 -82599473 - HERVE LTR ERV1 -2923 4062 3936 257 299 0 0 chr9 35263397 35263474 -82599153 - HERVE LTR ERV1 -5771 2964 2888 2859 108 28 2 chr9 35264749 35265183 -82597444 - LTR45 LTR ERV1 0 525 81 4544 148 82 7 chr9 35265897 35266737 -82595890 - MER4D LTR ERV1 0 903 1 1071 230 88 12 chr9 35266891 35267230 -82595397 - MLT1A1 LTR MaLR 0 365 1 931 247 226 36 chr9 35267732 35268258 -82594369 - MLT1E2 LTR MaLR -28 626 1 2806 22 0 0 chr9 35269872 35270185 -82592442 - AluYb8 SINE Alu -5 313 1 2007 135 29 35 chr9 35270243 35270620 -82592007 - THE1C LTR MaLR 0 375 1 1797 209 12 25 chr9 35270691 35271081 -82591546 + MER74A LTR ERVL 24 408 -150 2586 182 59 16 chr9 35271081 35271659 -82590968 + MER73 LTR ERVL 1 603 -41 2065 139 17 3 chr9 35271668 35271970 -82590657 + AluSx SINE Alu 1 306 -6 770 209 0 0 chr9 35271975 35272114 -82590513 + MER74A LTR ERVL 420 558 0 263 383 0 0 chr9 35272865 35272959 -82589668 + L2 LINE L2 3174 3267 -5 1357 197 133 68 chr9 35273079 35273551 -82589076 + MLT1D LTR MaLR 3 505 0 3860 113 7 0 chr9 35273677 35274227 -82588400 + MER41A LTR ERV1 1 554 0 3863 126 12 31 chr9 35274312 35274962 -82587665 + MER41A-int LTR ERV1 1 638 -5308 * 10880 123 42 31 chr9 35274941 35275910 -82586717 + MER41A-int LTR ERV1 2606 3563 -2383 2434 74 0 19 chr9 35275910 35276222 -82586405 + AluY SINE Alu 1 306 -5 10880 123 42 31 chr9 35276222 35278407 -82584220 + MER41A-int LTR ERV1 3563 5944 -2 3787 91 45 0 chr9 35278407 35278937 -82583690 + MER41A LTR ERV1 1 554 0 438 284 163 5 chr9 35279192 35279382 -82583245 + MIR SINE MIR 10 229 -33 265 267 93 0 chr9 35279435 35279521 -82583106 - MIR SINE MIR -29 233 140 1405 176 18 15 chr9 35279521 35279794 -82582833 + MLT1B LTR MaLR 1 274 -116 297 288 0 0 chr9 35280149 35280229 -82582398 + MIR3 SINE MIR 117 196 -12 1138 188 66 0 chr9 35280643 35280946 -82581681 + MER33 DNA MER1_type 2 324 0 255 61 0 0 chr9 35281353 35281386 -82581241 + (CA)n Simple_repeat Simple_repeat 2 34 0 1238 199 119 47 chr9 35281627 35282030 -82580597 + MSTB1 LTR MaLR 1 432 0 480 335 62 33 chr9 35282437 35282709 -82579918 + L2 LINE L2 2571 2850 -464 319 276 112 0 chr9 35282794 35282892 -82579735 - L2 LINE L2 -8 3305 3197 1220 229 22 29 chr9 35283296 35283565 -82579062 + L1MEc LINE L1 2076 2342 -4054 1014 210 22 5 chr9 35283565 35283789 -82578838 - L1PA16 LINE L1 0 6166 5939 1220 229 22 29 chr9 35283789 35283930 -82578697 + L1MEc LINE L1 2342 2483 -3913 555 66 84 6 chr9 35283935 35284102 -82578525 + (TA)n Simple_repeat Simple_repeat 1 180 0 424 105 58 35 chr9 35284064 35284235 -82578392 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 * 437 82 101 0 chr9 35284258 35284416 -82578211 + (TA)n Simple_repeat Simple_repeat 1 174 0 239 96 109 13 chr9 35284444 35284600 -82578027 + (TA)n Simple_repeat Simple_repeat 2 172 0 439 98 86 0 chr9 35284614 35284777 -82577850 + (TA)n Simple_repeat Simple_repeat 1 177 0 822 240 22 47 chr9 35284777 35285098 -82577529 + L1MEc LINE L1 2441 2753 -3462 1234 171 68 4 chr9 35285343 35285404 -82577223 + AluJo SINE Alu 57 113 -199 241 26 53 0 chr9 35285404 35285442 -82577185 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 1234 171 68 4 chr9 35285442 35285614 -82577013 + AluJo SINE Alu 113 305 -7 536 259 87 47 chr9 35285629 35285950 -82576677 - MER46C DNA MER2_type -4 334 1 523 231 114 67 chr9 35285965 35286429 -82576198 - L1ME4a LINE L1 -23 6098 5613 1441 103 0 0 chr9 35286618 35286803 -82575824 - AluSg/x SINE Alu -9 303 119 1051 134 0 12 chr9 35286803 35286967 -82575660 + L1PA15 LINE L1 5991 6152 -13 341 231 217 35 chr9 35287017 35287160 -82575467 - MIR SINE MIR -21 241 73 607 262 94 29 chr9 35287882 35288233 -82574394 + HAL1b LINE L1 298 671 -677 925 255 81 23 chr9 35288325 35288748 -82573879 + MER113 DNA MER1_type? 34 481 -40 570 214 6 60 chr9 35288748 35288916 -82573711 + MLT1A1 LTR MaLR 1 159 -206 441 329 123 6 chr9 35292599 35292769 -82569858 + MIR SINE MIR 20 209 -53 1225 211 82 40 chr9 35293197 35293549 -82569078 + L1ME2 LINE L1 5710 6085 -79 837 213 34 19 chr9 35293549 35293756 -82568871 - MER63A DNA MER1_type 0 210 1 1225 211 82 40 chr9 35293756 35293830 -82568797 + L1ME2 LINE L1 6085 6154 -10 22 35 0 0 chr9 35294132 35294161 -82568466 + AT_rich Low_complexity Low_complexity 1 29 0 1756 145 64 3 chr9 35294170 35294452 -82568175 + AluJb SINE Alu 1 299 -13 315 0 0 0 chr9 35294452 35294487 -82568140 + (TA)n Simple_repeat Simple_repeat 1 35 0 1839 235 70 42 chr9 35294488 35295114 -82567513 - L1ME1 LINE L1 -23 6143 5536 2049 111 0 0 chr9 35295114 35295384 -82567243 + AluY SINE Alu 37 306 -5 14863 83 6 0 chr9 35295391 35298278 -82564349 + L1PA7 LINE L1 3262 6154 0 1839 235 70 42 chr9 35298278 35299198 -82563429 - L1ME1 LINE L1 -635 5531 4454 2412 64 7 3 chr9 35299291 35299587 -82563040 - AluY SINE Alu -14 297 1 1965 162 11 16 chr9 35299591 35299955 -82562672 + MLT2D LTR ERVL 7 368 -46 243 114 0 0 chr9 35300025 35300060 -82562567 + MLT2D LTR ERVL 478 512 -8 382 256 15 59 chr9 35300062 35300213 -82562414 - L1ME1 LINE L1 -1801 4345 4201 774 223 48 0 chr9 35300659 35300825 -82561802 + FAM SINE Alu 1 174 -1 1682 223 65 34 chr9 35302362 35302868 -82559759 - L1ME3A LINE L1 -23 6147 5626 1797 141 3 30 chr9 35303806 35304105 -82558522 + AluJo SINE Alu 21 311 -1 309 375 11 5 chr9 35304123 35304307 -82558320 + MIR SINE MIR 73 257 -5 9059 174 136 19 chr9 35304459 35306434 -82556193 + L1PBa LINE L1 6 2211 -4652 3590 91 9 30 chr9 35306434 35306905 -82555722 + L1PB1 LINE L1 5632 6092 -59 2447 74 3 0 chr9 35306905 35307203 -82555424 + AluY SINE Alu 1 299 -12 3590 91 9 30 chr9 35307203 35307259 -82555368 + L1PB1 LINE L1 6092 6148 -3 2433 91 7 0 chr9 35307284 35307593 -82555034 + AluSx SINE Alu 1 311 -1 1229 195 44 101 chr9 35308447 35308944 -82553683 + L1MEc LINE L1 767 1235 -5161 261 314 46 10 chr9 35309194 35309388 -82553239 + L1M4 LINE L1 3792 3992 -2154 1931 256 54 14 chr9 35309413 35310589 -82552038 + L1MEc LINE L1 35 1347 -5049 349 142 9 3 chr9 35310589 35310664 -82551963 - MLT2B1 LTR ERVL 0 520 368 23 33 0 0 chr9 35310667 35310697 -82551930 + AT_rich Low_complexity Low_complexity 1 30 0 21 82 0 0 chr9 35310727 35310776 -82551851 + AT_rich Low_complexity Low_complexity 1 49 0 715 161 8 54 chr9 35310796 35310926 -82551701 - MLT2B1 LTR ERVL -40 480 357 783 216 57 5 chr9 35310944 35311030 -82551597 - Ricksha DNA DNA -810 444 349 13883 152 46 24 chr9 35311030 35311230 -82551397 - ERVL LTR ERVL -1 5763 5569 2003 145 0 10 chr9 35311230 35311527 -82551100 + AluJb SINE Alu 1 294 -18 13883 152 46 24 chr9 35311527 35313710 -82548917 - ERVL LTR ERVL -195 5569 3328 4347 124 22 13 chr9 35313712 35314051 -82548576 + L1PB1 LINE L1 5452 5787 -364 372 43 0 0 chr9 35314051 35314097 -82548530 + (TG)n Simple_repeat Simple_repeat 1 46 0 4347 124 22 13 chr9 35314097 35314450 -82548177 + L1PB1 LINE L1 5787 6150 -1 2984 184 25 11 chr9 35314455 35315068 -82547559 + L1 LINE L1 3777 4397 -1749 242 69 69 0 chr9 35315069 35315127 -82547500 + (TA)n Simple_repeat Simple_repeat 2 63 0 401 188 12 12 chr9 35315127 35315212 -82547415 + L1PB2 LINE L1 3931 4015 -2131 404 181 0 21 chr9 35315233 35315327 -82547300 + L1PB2 LINE L1 4424 4515 -1631 1149 79 7 0 chr9 35315342 35315482 -82547145 + AluSq SINE Alu 125 265 -48 302 222 0 0 chr9 35315522 35315585 -82547042 - L1MC4 LINE L1 -1339 6703 6641 471 78 0 0 chr9 35315585 35315649 -82546978 + (CA)n Simple_repeat Simple_repeat 1 64 0 5809 146 26 19 chr9 35315660 35317113 -82545514 + L1PB2 LINE L1 4493 5958 -193 2194 110 14 3 chr9 35317113 35317405 -82545222 + AluSc SINE Alu 2 296 -13 5809 146 26 19 chr9 35317405 35317594 -82545033 + L1PB2 LINE L1 5958 6144 -7 949 207 0 0 chr9 35317598 35317762 -82544865 + AluJb SINE Alu 121 284 -28 207 0 0 0 chr9 35317762 35317785 -82544842 + (CA)n Simple_repeat Simple_repeat 2 24 0 2168 112 3 3 chr9 35317869 35318173 -82544454 + AluSp SINE Alu 1 304 -9 4447 88 73 135 chr9 35318967 35320079 -82542548 - pTR5 LTR ERV1 0 2426 34 215 204 74 0 chr9 35320172 35320226 -82542401 + L2 LINE L2 3211 3268 -45 183 42 0 0 chr9 35320269 35320293 -82542334 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 231 146 0 0 chr9 35320733 35320774 -82541853 + (CGGGG)n Simple_repeat Simple_repeat 2 42 0 291 312 48 0 chr9 35323113 35323238 -82539389 - MIR SINE MIR -102 160 30 195 267 0 50 chr9 35323400 35323460 -82539167 - L3 LINE CR1 -1 1576 1520 521 265 37 42 chr9 35323904 35324093 -82538534 - MLT1J LTR MaLR -19 492 305 329 83 50 0 chr9 35324142 35324202 -82538425 + T-rich Low_complexity Low_complexity 5 67 0 2044 85 77 4 chr9 35324224 35324496 -82538131 - AluSg SINE Alu -18 292 1 25 0 0 0 chr9 35324504 35324529 -82538098 + AT_rich Low_complexity Low_complexity 1 25 0 351 222 35 154 chr9 35324530 35324674 -82537953 - MLT1L LTR MaLR -335 176 94 2226 103 0 7 chr9 35324674 35324965 -82537662 + AluSq SINE Alu 1 289 -24 351 222 35 154 chr9 35324965 35325050 -82537577 - MLT1L LTR MaLR -417 94 1 291 307 20 20 chr9 35325148 35325301 -82537326 - MER5A DNA MER1_type -36 153 1 649 251 94 39 chr9 35325479 35325786 -82536841 - HAL1 LINE L1 -111 2396 2073 231 86 0 0 chr9 35326037 35326072 -82536555 + MER69 DNA AcHobo 2384 2418 -108 458 183 10 48 chr9 35326115 35326219 -82536408 + MER69 DNA AcHobo 2411 2510 -16 1372 219 90 82 chr9 35326228 35327040 -82535587 - HAL1 LINE L1 -845 1662 845 322 305 48 0 chr9 35327771 35327876 -82534751 + L2 LINE L2 3153 3262 -10 194 311 189 0 chr9 35329146 35329268 -82533359 - L2 LINE L2 -195 3077 2933 547 255 48 81 chr9 35329618 35329928 -82532699 - L2 LINE L2 -829 2485 2186 452 327 14 6 chr9 35330528 35330589 -82532038 - MIR3 SINE MIR -21 187 128 2424 86 0 0 chr9 35330589 35330891 -82531736 + AluY SINE Alu 1 302 -9 452 327 14 6 chr9 35330891 35330995 -82531632 - MIR3 SINE MIR -80 128 20 1111 120 40 198 chr9 35331222 35331546 -82531081 - Tigger3(Golem) DNA MER2_type -2 3027 2755 2202 99 3 0 chr9 35331549 35331854 -82530773 + AluSp SINE Alu 1 306 0 1211 143 0 0 chr9 35331854 35332022 -82530605 + AluSg/x SINE Alu 132 299 -11 477 205 0 0 chr9 35332022 35332100 -82530527 - Tigger3(Golem) DNA MER2_type -2951 78 1 455 264 63 19 chr9 35333066 35333225 -82529402 - MIR SINE MIR -76 186 21 2655 37 3 0 chr9 35333542 35333842 -82528785 + AluY SINE Alu 1 301 -10 265 333 70 26 chr9 35333918 35334074 -82528553 + L2 LINE L2 2922 3084 -188 3967 154 82 41 chr9 35334238 35334378 -82528249 + L1MB7 LINE L1 4865 4998 -1186 2043 131 17 0 chr9 35334378 35334669 -82527958 + AluSx SINE Alu 1 296 -16 3967 154 82 41 chr9 35334669 35335267 -82527360 + L1MB7 LINE L1 4998 5570 -614 2562 206 109 30 chr9 35335267 35335946 -82526681 - MER44D DNA MER2_type 0 605 1 3967 154 82 41 chr9 35335946 35336109 -82526518 + L1MB7 LINE L1 5570 5725 -459 2302 99 7 0 chr9 35336109 35336412 -82526215 + AluSg SINE Alu 1 305 -5 2417 57 0 0 chr9 35336414 35336726 -82525901 + AluY SINE Alu 1 312 0 3967 154 82 41 chr9 35336726 35337079 -82525548 + L1MB7 LINE L1 5725 6159 -25 762 169 0 7 chr9 35337296 35337438 -82525189 + FLAM_C SINE Alu 2 142 -1 2204 149 15 35 chr9 35337488 35337664 -82524963 + MLT1B LTR MaLR 3 181 -209 2377 78 0 3 chr9 35337664 35337957 -82524670 + AluSq SINE Alu 1 292 -21 2204 149 15 35 chr9 35337957 35338176 -82524451 + MLT1B LTR MaLR 181 390 0 4474 168 43 34 chr9 35338176 35338320 -82524307 + MLT1B-int LTR MaLR 1 142 -1229 2286 94 19 10 chr9 35338320 35338627 -82524000 + AluSx SINE Alu 1 310 -2 4474 168 43 34 chr9 35338627 35338697 -82523930 + MLT1B-int LTR MaLR 142 210 -1161 2252 119 3 0 chr9 35338697 35339007 -82523620 + AluSx SINE Alu 1 311 -1 4474 168 43 34 chr9 35339007 35339666 -82522961 + MLT1B-int LTR MaLR 210 883 -488 312 333 9 0 chr9 35339727 35339832 -82522795 + MLT1B-int LTR MaLR 678 783 -952 2034 219 47 26 chr9 35339885 35340006 -82522621 + MLT1B-int LTR MaLR 895 1012 -359 1837 107 68 14 chr9 35340006 35340286 -82522341 + AluSg SINE Alu 1 295 -15 2034 219 47 26 chr9 35340286 35340629 -82521998 + MLT1B-int LTR MaLR 1012 1369 -2 1418 152 71 8 chr9 35340631 35340943 -82521684 + MLT1B LTR MaLR 1 381 -9 788 206 57 5 chr9 35340950 35341144 -82521483 + L1MB7 LINE L1 5776 5979 -205 405 222 22 0 chr9 35341144 35341234 -82521393 + MER20 DNA MER1_type 128 219 0 2272 95 0 29 chr9 35341428 35341743 -82520884 - AluSx SINE Alu 0 312 7 728 112 9 0 chr9 35341752 35341859 -82520768 - AluJb SINE Alu 0 312 205 354 135 0 0 chr9 35341859 35341911 -82520716 - AluSp SINE Alu -131 172 121 315 170 0 0 chr9 35341930 35341983 -82520644 - AluJb SINE Alu -169 133 81 2199 132 0 0 chr9 35341983 35342294 -82520333 - AluSx SINE Alu -1 311 1 465 262 28 14 chr9 35342429 35342574 -82520053 - MER20 DNA MER1_type 0 219 73 243 130 0 0 chr9 35342678 35342724 -82519903 - Alu SINE Alu 0 303 258 246 174 0 0 chr9 35343336 35343382 -82519245 + GA-rich Low_complexity Low_complexity 3 48 0 1844 129 16 43 chr9 35343759 35344062 -82518565 - AluJb SINE Alu -17 295 1 28 48 0 0 chr9 35344173 35344215 -82518412 + AT_rich Low_complexity Low_complexity 1 42 0 2249 97 7 7 chr9 35344826 35345115 -82517512 + AluSq SINE Alu 1 289 -24 362 303 53 11 chr9 35345212 35345400 -82517227 + L1ME2 LINE L1 59 254 -6605 1073 274 30 15 chr9 35345782 35345823 -82516804 + L1ME2 LINE L1 1475 1514 -5341 2296 103 3 3 chr9 35345823 35346125 -82516502 - AluSx SINE Alu -10 302 1 1073 274 30 15 chr9 35346125 35346496 -82516131 + L1ME2 LINE L1 1514 1889 -4966 1147 167 27 0 chr9 35346564 35346785 -82515842 + L1 LINE L1 4699 4925 -1221 673 289 119 30 chr9 35346812 35347524 -82515103 + L1ME2 LINE L1 1813 2637 -4501 2234 56 0 77 chr9 35347524 35347847 -82514780 + AluY SINE Alu 1 298 -13 673 289 119 30 chr9 35347847 35348117 -82514510 + L1ME2 LINE L1 2637 2882 -4256 1035 249 98 51 chr9 35348129 35348833 -82513794 + L1ME2 LINE L1 4606 5342 -1615 4830 223 32 33 chr9 35348987 35349709 -82512918 + L1PA12 LINE L1 2196 2917 -4667 2517 71 0 3 chr9 35349709 35350018 -82512609 + AluY SINE Alu 1 308 -3 4830 223 32 33 chr9 35350018 35351185 -82511442 + L1PA12 LINE L1 2917 4104 -3480 3548 136 82 3 chr9 35351185 35351779 -82510848 + L1PA16 LINE L1 5517 6157 -9 308 252 36 29 chr9 35351786 35351925 -82510702 + L1ME2 LINE L1 5344 5483 -1474 1827 179 42 10 chr9 35351925 35352486 -82510141 + MER76 LTR ERV 1 635 -53 502 33 0 0 chr9 35352498 35352559 -82510068 + L1PA16 LINE L1 6097 6157 -9 553 227 23 0 chr9 35352637 35352765 -82509862 + L1ME2 LINE L1 5480 5610 -1347 * 2422 238 57 21 chr9 35352763 35353477 -82509150 + L1ME2 LINE L1 6226 6965 -10 222 128 0 0 chr9 35353569 35353608 -82509019 + (TGGA)n Simple_repeat Simple_repeat 3 41 0 1319 86 0 0 chr9 35353857 35354032 -82508595 + AluY SINE Alu 128 302 -9 311 250 71 101 chr9 35354998 35355166 -82507461 + MIR SINE MIR 46 208 -54 2753 10 0 0 chr9 35355282 35355592 -82507035 - AluYa5 SINE Alu -1 310 1 1326 304 84 27 chr9 35357237 35357868 -82504759 + HERVL LTR ERVL 2563 3229 -2425 2862 176 11 0 chr9 35357904 35358375 -82504252 - MER70B LTR ERVL -102 476 1 394 273 9 27 chr9 35358789 35358899 -82503728 + HERVL LTR ERVL 3726 3833 -1821 728 291 102 62 chr9 35358915 35359669 -82502958 - L1MEd LINE L1 -5012 1107 324 391 298 51 56 chr9 35359909 35360124 -82502503 + MIR SINE MIR 2 215 -47 380 315 107 0 chr9 35360344 35360493 -82502134 - L1ME4a LINE L1 -193 5928 5764 412 267 81 90 chr9 35360629 35360962 -82501665 + L2 LINE L2 2984 3313 0 591 133 37 1 chr9 35361152 35361261 -82501366 + L1MA5A LINE L1 6006 6119 -184 203 269 30 0 chr9 35362022 35362089 -82500538 + (CAGG)n Simple_repeat Simple_repeat 4 72 0 418 268 91 77 chr9 35362708 35362928 -82499699 + MIR SINE MIR 21 243 -19 286 244 115 0 chr9 35363841 35363919 -82498708 + MIR SINE MIR 64 150 -112 609 217 19 76 chr9 35366067 35366224 -82496403 - MER5B DNA MER1_type -29 149 2 437 320 6 58 chr9 35367170 35367342 -82495285 + MER5B DNA MER1_type 16 178 0 812 186 28 0 chr9 35367356 35367501 -82495126 - MER5A DNA MER1_type -7 182 34 198 0 0 0 chr9 35371307 35371329 -82491298 + (CCA)n Simple_repeat Simple_repeat 1 22 0 231 207 0 0 chr9 35371329 35371387 -82491240 + A-rich Low_complexity Low_complexity 1 58 0 1407 117 108 29 chr9 35371689 35371929 -82490698 - AluSx SINE Alu -53 259 1 4447 129 9 10 chr9 35371954 35372653 -82489974 - L1PA16 LINE L1 -9 6157 5460 221 235 112 112 chr9 35373466 35373636 -82488991 + MIR SINE MIR 92 261 -1 297 231 115 0 chr9 35374534 35374612 -82488015 + MIR SINE MIR 64 150 -112 1717 186 113 52 chr9 35374665 35375126 -82487501 - L1MDa LINE L1 -4836 1808 1306 2244 99 0 0 chr9 35375126 35375428 -82487199 - AluSx SINE Alu -10 302 1 1717 186 113 52 chr9 35375428 35375525 -82487102 - L1MDa LINE L1 -5338 1306 1216 2410 177 17 15 chr9 35375533 35376014 -82486613 - L1MC1 LINE L1 -1 6332 5851 802 172 0 14 chr9 35376021 35376166 -82486461 + FLAM_C SINE Alu 1 143 0 1298 147 8 56 chr9 35376185 35376437 -82486190 - AluJo SINE Alu -30 282 43 1138 110 17 6 chr9 35376437 35376610 -82486017 - L1MC1 LINE L1 -510 5823 5649 297 244 25 101 chr9 35376607 35376726 -82485901 + L1MB2 LINE L1 6005 6114 -57 * 400 285 73 57 chr9 35376827 35377143 -82485484 + L1ME4a LINE L1 5578 5898 -223 252 0 0 0 chr9 35377144 35377172 -82485455 + (TG)n Simple_repeat Simple_repeat 2 29 0 371 289 154 7 chr9 35377295 35377444 -82485183 - MIR SINE MIR -8 254 84 957 264 45 32 chr9 35377619 35377929 -82484698 - L1MDa LINE L1 -6227 315 2 1956 134 0 0 chr9 35377943 35378254 -82484373 - AluSx SINE Alu 0 311 1 446 224 42 63 chr9 35378437 35378580 -82484047 + L1M4 LINE L1 483 622 -5920 520 319 94 51 chr9 35378602 35379154 -82483473 + L1M4 LINE L1 797 1372 -5262 361 359 24 12 chr9 35379169 35379336 -82483291 - L2 LINE L2 -180 3092 2924 438 296 107 28 chr9 35379464 35379717 -82482910 - L2 LINE L2 -553 2761 2489 3772 156 24 17 chr9 35379720 35380091 -82482536 + L1PA15 LINE L1 4675 5042 -1123 2089 113 0 0 chr9 35380091 35380382 -82482245 + AluSg SINE Alu 5 295 -15 3772 156 24 17 chr9 35380382 35381197 -82481430 + L1PA15 LINE L1 5042 5867 -298 1665 48 48 0 chr9 35381235 35381443 -82481184 + LTR12 LTR ERV1 493 710 -4 776 207 0 0 chr9 35381443 35381583 -82481044 + AluJb SINE Alu 153 292 -20 1705 114 0 46 chr9 35381584 35381864 -82480763 + AluSg SINE Alu 33 299 -11 5624 161 17 36 chr9 35381866 35382875 -82479752 + L1 LINE L1 3303 4289 -1857 1996 134 0 0 chr9 35382875 35383174 -82479453 + AluSx SINE Alu 1 299 -13 5624 161 17 36 chr9 35383174 35383316 -82479311 + L1 LINE L1 4289 4432 -1714 809 102 0 0 chr9 35383327 35383435 -82479192 - AluSq/x SINE Alu -204 108 1 1943 145 0 13 chr9 35383523 35383833 -82478794 + AluSx SINE Alu 1 306 -6 38 0 0 0 chr9 35383908 35383946 -82478681 + AT_rich Low_complexity Low_complexity 1 38 0 251 189 0 19 chr9 35384047 35384100 -82478527 - L2 LINE L2 0 3313 3262 284 296 0 0 chr9 35384251 35384322 -82478305 - L2 LINE L2 -16 3256 3186 3485 158 45 7 chr9 35384961 35385563 -82477064 + L1MC3 LINE L1 7136 7760 -25 1649 181 3 0 chr9 35385564 35385852 -82476775 + AluJb SINE Alu 1 289 -23 297 262 136 0 chr9 35385913 35386016 -82476611 - MIR SINE MIR -14 248 132 1087 149 0 0 chr9 35386028 35386203 -82476424 + AluSg/x SINE Alu 136 310 -2 237 330 0 0 chr9 35387080 35387168 -82475459 + G-rich Low_complexity Low_complexity 2 89 0 261 83 0 0 chr9 35387225 35387261 -82475366 + (TCCC)n Simple_repeat Simple_repeat 4 39 0 265 206 48 71 chr9 35387294 35387420 -82475207 + C-rich Low_complexity Low_complexity 6 128 0 219 36 0 0 chr9 35387828 35387856 -82474771 + (CCG)n Simple_repeat Simple_repeat 3 30 0 233 29 29 0 chr9 35388464 35388498 -82474129 + (TGGGGG)n Simple_repeat Simple_repeat 1 35 0 189 0 0 0 chr9 35388628 35388649 -82473978 + (A)n Simple_repeat Simple_repeat 1 21 0 2270 77 0 0 chr9 35389737 35390034 -82472593 - AluSg SINE Alu -13 297 1 228 86 0 0 chr9 35390191 35390226 -82472401 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 1393 180 14 32 chr9 35391272 35391555 -82471072 - AluJo SINE Alu -34 278 1 1959 106 10 27 chr9 35391718 35392019 -82470608 - AluSx SINE Alu -16 296 1 2247 84 3 3 chr9 35392192 35392490 -82470137 - AluSp SINE Alu -15 298 1 1524 148 44 37 chr9 35392525 35392823 -82469804 - AluJo SINE Alu -12 300 1 21 0 0 0 chr9 35392823 35392844 -82469783 + AT_rich Low_complexity Low_complexity 1 21 0 802 164 0 20 chr9 35392974 35392987 -82469640 - FLAM_C SINE Alu -169 143 131 2005 123 3 19 chr9 35392987 35393304 -82469323 - AluSx SINE Alu 0 312 1 802 164 0 20 chr9 35393304 35393436 -82469191 - FLAM_C SINE Alu -181 131 1 2225 95 0 0 chr9 35393479 35393774 -82468853 - AluSx SINE Alu -17 295 1 283 293 0 75 chr9 35394238 35394308 -82468319 + HsTC2 DNA Tc2 4 61 -1837 2048 112 0 38 chr9 35394308 35394453 -82468174 + AluSx SINE Alu 1 150 -162 2185 83 0 10 chr9 35394453 35394753 -82467874 + AluY SINE Alu 1 297 -14 2048 112 0 38 chr9 35394753 35394921 -82467706 + AluSx SINE Alu 150 302 -10 283 293 0 75 chr9 35394921 35394983 -82467644 + HsTC2 DNA Tc2 61 126 -1772 243 26 205 0 chr9 35395262 35395301 -82467326 + AluY SINE Alu 1 47 -86 2091 115 17 0 chr9 35395343 35395639 -82466988 - AluSx SINE Alu -11 301 1 2024 100 0 14 chr9 35395972 35396261 -82466366 + AluSx SINE Alu 15 299 -13 1957 100 3 48 chr9 35396515 35396825 -82465802 + AluY SINE Alu 1 296 -15 1693 124 6 76 chr9 35396898 35397213 -82465414 + AluSx SINE Alu 5 297 -15 21 0 0 0 chr9 35397229 35397250 -82465377 + AT_rich Low_complexity Low_complexity 1 21 0 855 198 5 53 chr9 35397268 35397455 -82465172 + AluJb SINE Alu 129 306 -6 1976 133 0 0 chr9 35397457 35397750 -82464877 + AluSq SINE Alu 1 293 -20 212 50 133 50 chr9 35397752 35397787 -82464840 + (TTAAA)n Simple_repeat Simple_repeat 4 35 -33 2151 122 0 0 chr9 35397787 35398098 -82464529 + AluSx SINE Alu 1 311 -1 212 50 133 50 chr9 35398098 35398122 -82464505 + (TTAAA)n Simple_repeat Simple_repeat 35 68 0 2001 113 14 0 chr9 35398122 35398413 -82464214 + AluSx SINE Alu 1 295 -17 2862 176 11 0 chr9 35399110 35399581 -82463046 + MER70B LTR ERVL 1 476 -102 1326 304 84 27 chr9 35399617 35400248 -82462379 - HERVL LTR ERVL -2425 3229 2563 2708 22 0 0 chr9 35401893 35402204 -82460423 + AluYa5 SINE Alu 1 311 0 311 250 71 101 chr9 35402325 35402493 -82460134 - MIR SINE MIR -54 208 46 2199 65 0 56 chr9 35403459 35403765 -82458862 - AluY SINE Alu -9 302 14 683 301 44 22 chr9 35403800 35404205 -82458422 - L1MEc LINE L1 -4593 1803 1390 305 238 0 0 chr9 35404352 35404415 -82458212 - MLT1H1 LTR MaLR -492 63 1 230 184 0 0 chr9 35404522 35404560 -82458067 + L2 LINE L2 3149 3186 -86 371 312 14 35 chr9 35404632 35404773 -82457854 + MIR3 SINE MIR 42 179 -29 1890 165 58 36 chr9 35404798 35405161 -82457466 - MLT1A2 LTR MaLR 0 374 4 559 196 5 162 chr9 35405542 35405746 -82456881 - MER5B DNA MER1_type 0 178 7 1838 192 104 72 chr9 35405848 35406113 -82456514 + MLT1D LTR MaLR 1 291 -214 2172 126 3 0 chr9 35406113 35406423 -82456204 + AluSq SINE Alu 3 313 0 1838 192 104 72 chr9 35406423 35406646 -82455981 + MLT1D LTR MaLR 291 505 0 2365 106 0 0 chr9 35407550 35407852 -82454775 - AluSq SINE Alu -11 302 1 2823 161 16 12 chr9 35408298 35408789 -82453838 + L1MB2 LINE L1 5677 6169 -2 337 374 96 14 chr9 35409791 35410206 -82452421 + L2 LINE L2 2521 2969 -345 514 213 8 71 chr9 35410267 35410394 -82452233 + L2 LINE L2 3179 3297 -16 213 39 0 0 chr9 35410636 35410662 -82451965 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 2380 116 0 0 chr9 35410953 35411264 -82451363 - AluSq SINE Alu -2 311 1 230 208 0 0 chr9 35411264 35411312 -82451315 - L1ME3A LINE L1 -224 5946 5899 2312 93 7 7 chr9 35411556 35411866 -82450761 + AluSg SINE Alu 1 310 0 303 203 27 0 chr9 35412717 35412791 -82449836 + L1MEc LINE L1 767 842 -5554 507 251 86 34 chr9 35412908 35413083 -82449544 - MIR SINE MIR -76 186 3 2458 68 0 0 chr9 35413384 35413676 -82448951 + AluSq SINE Alu 1 292 -21 1293 169 5 0 chr9 35413676 35413895 -82448732 + MLT1B LTR MaLR 171 390 0 4102 174 45 36 chr9 35413895 35414039 -82448588 + MLT1B-int LTR MaLR 1 142 -1229 2265 94 19 10 chr9 35414039 35414346 -82448281 + AluSx SINE Alu 1 310 -2 4102 174 45 36 chr9 35414346 35414416 -82448211 + MLT1B-int LTR MaLR 142 210 -1161 2230 119 3 0 chr9 35414416 35414726 -82447901 + AluSx SINE Alu 1 311 -1 4102 174 45 36 chr9 35414726 35415349 -82447278 + MLT1B-int LTR MaLR 210 847 -524 314 200 0 0 chr9 35415631 35415696 -82446931 + Alu SINE Alu 237 301 0 759 181 30 8 chr9 35415696 35415829 -82446798 - MER2 DNA MER2_type -209 136 1 256 225 0 45 chr9 35415841 35415930 -82446697 + (TA)n Simple_repeat Simple_repeat 1 85 0 419 236 28 66 chr9 35415980 35416008 -82446619 + HAL1 LINE L1 1155 1183 -1324 1282 174 47 109 chr9 35416008 35416128 -82446499 + AluJo SINE Alu 1 127 -175 1718 172 20 17 chr9 35416128 35416430 -82446197 + AluJo SINE Alu 1 303 -9 1282 174 47 109 chr9 35416430 35416631 -82445996 + AluJo SINE Alu 127 302 0 419 236 28 66 chr9 35416631 35416784 -82445843 + HAL1 LINE L1 1183 1329 -1178 815 252 104 0 chr9 35416794 35417064 -82445563 + HAL1 LINE L1 1395 1692 -815 2017 136 0 7 chr9 35417078 35417372 -82445255 - AluSx SINE Alu -19 293 2 346 98 115 16 chr9 35417372 35417433 -82445194 + L1MB8 LINE L1 6049 6115 -63 1324 117 0 75 chr9 35417434 35417648 -82444979 - Tigger3(Golem) DNA MER2_type -1 3028 2831 1354 86 6 6 chr9 35417649 35417824 -82444803 - AluSq SINE Alu -138 175 1 24 0 0 0 chr9 35417884 35417908 -82444719 + AT_rich Low_complexity Low_complexity 1 24 0 2316 106 6 0 chr9 35417908 35418219 -82444408 - AluSp SINE Alu 0 313 1 2184 119 0 0 chr9 35418222 35418517 -82444110 - AluSx SINE Alu -17 295 1 215 306 69 0 chr9 35418821 35418893 -82443734 + MIR SINE MIR 186 262 0 202 344 11 11 chr9 35418922 35419015 -82443612 + L2 LINE L2 2437 2529 -785 189 296 200 37 chr9 35419060 35419195 -82443432 + L2 LINE L2 2916 3072 -200 23 0 0 0 chr9 35419612 35419635 -82442992 + AT_rich Low_complexity Low_complexity 1 23 0 2141 106 0 7 chr9 35419791 35420084 -82442543 - AluY SINE Alu -18 293 3 381 258 210 56 chr9 35420508 35420588 -82442039 - MIR SINE MIR -19 243 177 1125 235 157 20 chr9 35420588 35420984 -82441643 - MLT1J2 LTR MaLR 0 450 1 381 258 210 56 chr9 35420984 35421116 -82441511 - MIR SINE MIR -85 177 1 2405 95 0 3 chr9 35422176 35422480 -82440147 - AluSq SINE Alu -9 304 2 1312 256 23 7 chr9 35422713 35423021 -82439606 + MLT1A1 LTR MaLR 1 313 -52 619 240 54 54 chr9 35423176 35423343 -82439284 + MIR SINE MIR 49 218 -44 2447 58 0 35 chr9 35423343 35423655 -82438972 + AluY SINE Alu 1 301 -10 619 240 54 54 chr9 35423655 35423691 -82438936 + MIR SINE MIR 217 252 -10 1053 179 10 46 chr9 35423878 35424073 -82438554 - MER5A DNA MER1_type -1 188 1 478 298 128 14 chr9 35424148 35424366 -82438261 - MIR SINE MIR -14 248 6 1222 193 119 28 chr9 35424538 35424823 -82437804 - AluJb SINE Alu -1 311 1 292 278 139 0 chr9 35425066 35425174 -82437453 - MLT1H LTR MaLR -327 222 100 357 143 0 0 chr9 35425174 35425228 -82437399 - Alu SINE Alu -254 48 1 20757 82 2 1 chr9 35425618 35428344 -82434283 + L1P LINE L1 11 2737 -3409 22 0 0 0 chr9 35428445 35428467 -82434160 + AT_rich Low_complexity Low_complexity 1 22 0 1002 114 42 6 chr9 35428537 35428696 -82433931 - AluSg/x SINE Alu -14 298 131 1929 132 9 41 chr9 35428696 35428880 -82433747 - AluSx SINE Alu -4 308 137 2072 131 0 3 chr9 35428880 35429177 -82433450 - AluSq SINE Alu -17 296 1 1929 132 9 41 chr9 35429177 35429310 -82433317 - AluSx SINE Alu -175 137 1 977 188 0 33 chr9 35429507 35429688 -82432939 + L1PB4 LINE L1 5974 6148 -8 2323 79 10 7 chr9 35429936 35430239 -82432388 - AluSp SINE Alu -9 304 1 1555 117 5 0 chr9 35430301 35430515 -82432112 - AluSg/x SINE Alu -13 299 85 2070 102 10 3 chr9 35430654 35430949 -82431678 + AluSx SINE Alu 5 301 -11 701 124 0 0 chr9 35431141 35431238 -82431389 + HY3 scRNA scRNA 1 97 -4 213 39 0 0 chr9 35431238 35431264 -82431363 + (A)n Simple_repeat Simple_repeat 1 26 0 833 165 8 8 chr9 35431323 35431456 -82431171 + FLAM_C SINE Alu 1 133 0 1673 111 0 0 chr9 35431581 35431806 -82430821 - AluSg/x SINE Alu -13 299 75 185 0 40 0 chr9 35431806 35431831 -82430796 + (TTTTA)n Simple_repeat Simple_repeat 3 28 0 1999 130 0 7 chr9 35431832 35432124 -82430503 - AluY SINE Alu -21 290 1 2327 78 3 0 chr9 35432190 35432497 -82430130 + AluSp SINE Alu 1 308 0 2238 99 0 13 chr9 35432538 35432852 -82429775 + AluY SINE Alu 1 310 -1 299 173 40 0 chr9 35432961 35433036 -82429591 - L1ME1 LINE L1 -5 6161 6084 2102 119 0 7 chr9 35433234 35433528 -82429099 - AluSg SINE Alu -18 292 1 970 93 47 0 chr9 35433528 35433657 -82428970 - AluSq/x SINE Alu -177 135 1 2158 180 71 9 chr9 35433793 35434242 -82428385 - L1MB4 LINE L1 -1 6179 5703 448 262 0 78 chr9 35434243 35434353 -82428274 - L1M4c LINE L1 -6225 159 61 2130 106 6 37 chr9 35434353 35434674 -82427953 - AluSx SINE Alu -1 311 1 448 262 0 78 chr9 35434674 35434704 -82427923 - L1M4c LINE L1 -6323 61 30 303 225 53 119 chr9 35434742 35434798 -82427829 - L1ME4a LINE L1 -7 6114 6056 2318 102 3 0 chr9 35434798 35435103 -82427524 + AluSp SINE Alu 7 312 -1 303 225 53 119 chr9 35435103 35435197 -82427430 - L1ME4a LINE L1 -65 6056 5974 1967 156 3 0 chr9 35435309 35435610 -82427017 - AluSx SINE Alu -10 302 1 281 169 104 13 chr9 35435656 35435733 -82426894 - L1ME4a LINE L1 -2050 5758 5675 1877 162 0 3 chr9 35435763 35436053 -82426574 + AluJo SINE Alu 1 289 -23 367 165 118 63 chr9 35436054 35436181 -82426446 + Tigger3(Golem) DNA MER2_type 2395 2528 -501 1307 96 0 17 chr9 35436184 35436362 -82426265 + AluSq SINE Alu 1 175 -138 1369 113 0 70 chr9 35436363 35436576 -82426051 + Tigger3(Golem) DNA MER2_type 2841 3038 0 377 82 115 16 chr9 35436577 35436638 -82425989 - L1MB8 LINE L1 -63 6115 6049 2009 139 0 7 chr9 35436638 35436933 -82425694 + AluSx SINE Alu 2 294 -18 815 252 104 0 chr9 35436947 35437217 -82425410 - HAL1 LINE L1 -815 1692 1395 419 236 28 66 chr9 35437227 35437380 -82425247 - HAL1 LINE L1 -1178 1329 1183 1266 177 47 109 chr9 35437380 35437581 -82425046 - AluJo SINE Alu 0 302 127 1744 169 20 17 chr9 35437581 35437883 -82424744 - AluJo SINE Alu -9 303 1 1266 177 47 109 chr9 35437883 35438003 -82424624 - AluJo SINE Alu -175 127 1 419 236 28 66 chr9 35438003 35438031 -82424596 - HAL1 LINE L1 -1324 1183 1155 256 225 0 45 chr9 35438081 35438170 -82424457 + (TA)n Simple_repeat Simple_repeat 1 85 0 724 186 31 8 chr9 35438182 35438311 -82424316 + MER2 DNA MER2_type 1 132 -213 421 101 0 29 chr9 35438311 35438380 -82424247 - Alu SINE Alu -8 303 237 293 167 0 19 chr9 35438445 35438499 -82424128 + MER2 DNA MER2_type 268 320 -25 212 167 21 0 chr9 35438511 35438559 -82424068 + (TA)n Simple_repeat Simple_repeat 2 50 0 442 156 0 0 chr9 35438724 35438788 -82423839 + AluS SINE Alu 2 65 -253 2169 114 3 0 chr9 35438964 35439262 -82423365 + AluSx SINE Alu 1 299 -13 1731 175 42 82 chr9 35439264 35439402 -82423225 + MLT1A1 LTR MaLR 1 143 -222 2193 114 0 0 chr9 35439402 35439701 -82422926 - AluSq SINE Alu -14 299 1 1731 175 42 82 chr9 35439701 35439877 -82422750 + MLT1A1 LTR MaLR 143 300 -65 1847 162 7 14 chr9 35439877 35440173 -82422454 + AluJo SINE Alu 1 294 -18 1731 175 42 82 chr9 35440173 35440234 -82422393 + MLT1A1 LTR MaLR 300 362 -3 241 237 21 82 chr9 35440363 35440460 -82422167 - L1ME3A LINE L1 -106 6064 5974 1405 244 70 48 chr9 35440549 35441094 -82421533 - L1MC5 LINE L1 -449 7512 6956 1037 139 7 0 chr9 35441099 35441250 -82421377 - AluSq SINE Alu -23 290 139 2294 82 10 0 chr9 35441251 35441543 -82421084 - AluSx SINE Alu -17 295 1 794 244 53 51 chr9 35441548 35441924 -82420703 - L1MC5 LINE L1 -1064 6978 6589 6728 161 124 138 chr9 35442190 35442285 -82420342 - Cheshire DNA MER1_type 0 2420 2325 1546 169 15 8 chr9 35442285 35442546 -82420081 + AluJb SINE Alu 5 267 -45 6728 161 124 138 chr9 35442546 35443056 -82419571 - Cheshire DNA MER1_type -95 2325 1810 702 197 134 14 chr9 35443056 35443198 -82419429 + FRAM SINE Alu 1 159 -7 2330 105 0 3 chr9 35443206 35443510 -82419117 - AluSx SINE Alu -7 305 3 6728 161 124 138 chr9 35443510 35443642 -82418985 - Cheshire DNA MER1_type -617 1803 1671 2099 122 14 0 chr9 35443642 35443938 -82418689 - AluSx SINE Alu -12 300 1 6728 161 124 138 chr9 35443938 35444382 -82418245 - Cheshire DNA MER1_type -749 1671 1223 2183 88 11 0 chr9 35444382 35444667 -82417960 - AluSq SINE Alu -25 288 1 6728 161 124 138 chr9 35444667 35444933 -82417694 - Cheshire DNA MER1_type -1197 1223 955 2210 104 7 7 chr9 35444933 35445232 -82417395 - AluSx SINE Alu -13 299 1 6728 161 124 138 chr9 35445232 35445344 -82417283 - Cheshire DNA MER1_type -1465 955 843 555 71 0 0 chr9 35445344 35445414 -82417213 - AluSp/q SINE Alu -10 303 234 2426 64 0 7 chr9 35445414 35445711 -82416916 - AluY SINE Alu -16 295 1 6728 161 124 138 chr9 35445711 35445889 -82416738 - Cheshire DNA MER1_type -1576 844 665 2093 124 7 10 chr9 35445889 35446024 -82416603 + AluSx SINE Alu 1 135 -177 2173 73 63 0 chr9 35446024 35446310 -82416317 + AluY SINE Alu 1 304 -7 2093 124 7 10 chr9 35446310 35446472 -82416155 + AluSx SINE Alu 135 297 -15 6728 161 124 138 chr9 35446472 35446995 -82415632 - Cheshire DNA MER1_type -1755 665 106 757 271 127 48 chr9 35446997 35447247 -82415380 - L1MCc LINE L1 -4590 2532 2303 1981 132 10 10 chr9 35447247 35447558 -82415069 - AluSx SINE Alu -1 311 1 757 271 127 48 chr9 35447558 35447911 -82414716 - L1MCc LINE L1 -4819 2303 1979 2167 114 3 10 chr9 35447911 35448218 -82414409 - AluSq SINE Alu -8 305 1 757 271 127 48 chr9 35448218 35448667 -82413960 - L1MCc LINE L1 -5143 1979 1173 1985 136 3 10 chr9 35448769 35449064 -82413563 - AluSq SINE Alu -17 296 4 1363 189 97 37 chr9 35449226 35449336 -82413291 - Charlie1 DNA MER1_type -400 2361 2259 1745 180 7 0 chr9 35449336 35449630 -82412997 + AluSx SINE Alu 1 296 -16 1363 189 97 37 chr9 35449630 35449869 -82412758 - Charlie1 DNA MER1_type -502 2259 1991 2481 80 0 0 chr9 35449869 35450171 -82412456 + AluSp SINE Alu 1 302 -11 234 292 0 21 chr9 35450238 35450334 -82412293 + (TATATG)n Simple_repeat Simple_repeat 5 98 0 455 229 25 8 chr9 35450356 35450474 -82412153 + MIR SINE MIR 74 193 -69 1337 179 4 40 chr9 35450482 35450755 -82411872 + AluJb SINE Alu 19 281 -31 259 237 140 32 chr9 35450758 35450851 -82411776 - MIR SINE MIR -76 186 84 26 30 0 0 chr9 35452049 35452082 -82410545 + AT_rich Low_complexity Low_complexity 1 33 0 938 231 129 23 chr9 35452112 35452723 -82409904 - L1MC4 LINE L1 -144 7898 7022 30 59 0 0 chr9 35452773 35452824 -82409803 + AT_rich Low_complexity Low_complexity 1 51 0 1826 145 10 3 chr9 35452924 35453214 -82409413 + AluJo SINE Alu 1 292 -20 1929 143 45 0 chr9 35453633 35453919 -82408708 + AluSx SINE Alu 1 299 -13 2231 104 16 0 chr9 35454172 35454479 -82408148 - AluSp SINE Alu -1 312 1 302 44 0 0 chr9 35454671 35454716 -82407911 - AluJo SINE Alu 0 302 258 863 172 29 46 chr9 35454716 35454890 -82407737 - AluJo SINE Alu -141 171 1 283 259 211 58 chr9 35454914 35455217 -82407410 - L1M4 LINE L1 -3156 2990 2612 2179 114 0 7 chr9 35455217 35455516 -82407111 - AluSq SINE Alu -16 297 1 283 259 211 58 chr9 35455516 35455606 -82407021 - L1M4 LINE L1 -3534 2612 2537 1722 152 26 0 chr9 35455612 35455881 -82406746 - AluJb SINE Alu -11 301 26 1626 147 96 0 chr9 35456690 35456962 -82405665 + AluJb SINE Alu 1 298 -14 897 215 114 64 chr9 35457162 35457600 -82405027 - HAL1 LINE L1 -1 2506 2047 360 181 0 0 chr9 35457694 35457777 -82404850 + (TCCG)n Simple_repeat Simple_repeat 2 84 0 2333 98 3 0 chr9 35457783 35458090 -82404537 - AluSx SINE Alu -4 308 1 285 330 18 9 chr9 35458090 35458199 -82404428 - HAL1 LINE L1 -2394 113 4 2078 125 10 0 chr9 35458210 35458506 -82404121 - AluSx SINE Alu -9 303 5 1353 192 49 21 chr9 35459314 35459601 -82403026 - AluJb SINE Alu -17 295 1 2151 107 0 4 chr9 35459705 35460018 -82402609 - AluSg SINE Alu 0 312 1 22 0 0 0 chr9 35460028 35460050 -82402577 + AT_rich Low_complexity Low_complexity 1 22 0 360 0 0 0 chr9 35460655 35460695 -82401932 + (TG)n Simple_repeat Simple_repeat 1 40 0 216 0 0 0 chr9 35460694 35460718 -82401909 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 1569 187 3 21 chr9 35460718 35461001 -82401626 - AluJo SINE Alu -34 278 1 21 0 0 0 chr9 35461001 35461022 -82401605 + AT_rich Low_complexity Low_complexity 1 21 0 1550 166 26 15 chr9 35461511 35461782 -82400845 + AluJo SINE Alu 1 274 -38 2345 43 0 7 chr9 35461832 35462153 -82400474 - AluY SINE Alu 0 319 1 1559 130 29 104 chr9 35462179 35462495 -82400132 + AluSx SINE Alu 1 292 -20 2320 107 0 3 chr9 35462737 35463046 -82399581 - AluSg SINE Alu -2 308 1 2025 102 44 14 chr9 35463817 35464112 -82398515 + AluSg SINE Alu 7 310 0 1964 103 40 30 chr9 35464135 35464435 -82398192 + AluSx SINE Alu 1 303 -9 1218 157 0 15 chr9 35464581 35464778 -82397849 - AluSg/x SINE Alu -15 295 102 1450 165 0 25 chr9 35464778 35465020 -82397607 - AluSx SINE Alu -76 236 1 1478 167 10 48 chr9 35465454 35465615 -82397012 - AluJo SINE Alu -25 287 140 2417 93 3 0 chr9 35465615 35465917 -82396710 - AluSq SINE Alu -10 303 1 1478 167 10 48 chr9 35465917 35466049 -82396578 - AluJo SINE Alu -172 140 5 660 224 63 87 chr9 35466075 35466106 -82396521 - HAL1 LINE L1 -142 2365 2335 2154 67 32 18 chr9 35466106 35466389 -82396238 - AluSg SINE Alu -23 287 1 660 224 63 87 chr9 35466389 35466707 -82395920 - HAL1 LINE L1 -172 2335 2025 2255 110 0 19 chr9 35466707 35467026 -82395601 - AluSq SINE Alu 0 313 1 660 224 63 87 chr9 35467026 35467100 -82395527 - HAL1 LINE L1 -482 2025 1951 2306 105 0 0 chr9 35467136 35467432 -82395195 - AluSx SINE Alu -16 296 1 729 279 22 26 chr9 35467465 35467694 -82394933 - L1ME3A LINE L1 -34 6136 5909 481 262 59 73 chr9 35467674 35467960 -82394667 - L1ME3A LINE L1 -823 5323 5042 * 664 106 96 0 chr9 35467986 35468080 -82394547 - Alu SINE Alu -206 104 2 1237 225 178 18 chr9 35468104 35468598 -82394029 - L1ME3A LINE L1 -270 5900 5328 435 102 0 0 chr9 35468598 35468657 -82393970 - AluYb8 SINE Alu -89 229 171 1034 145 0 0 chr9 35468659 35468804 -82393823 + AluSg/x SINE Alu 130 274 -38 640 239 39 7 chr9 35468876 35469031 -82393596 - LTR28 LTR ERV1 -467 553 394 597 230 169 11 chr9 35469068 35469268 -82393359 - LTR1 LTR ERV1 -559 226 33 1770 165 21 3 chr9 35469879 35470170 -82392457 + AluJb SINE Alu 1 296 -16 2165 91 3 14 chr9 35470317 35470643 -82391984 - AluSq SINE Alu 0 323 1 24 0 0 0 chr9 35470703 35470727 -82391900 + AT_rich Low_complexity Low_complexity 1 24 0 2299 109 6 0 chr9 35470727 35471038 -82391589 - AluSp SINE Alu 0 313 1 2184 119 0 0 chr9 35471041 35471336 -82391291 - AluSx SINE Alu -17 295 1 215 306 69 0 chr9 35471640 35471712 -82390915 + MIR SINE MIR 186 262 0 201 344 10 10 chr9 35471738 35471834 -82390793 + L2 LINE L2 2434 2529 -785 189 296 200 37 chr9 35471879 35472014 -82390613 + L2 LINE L2 2916 3072 -200 23 0 0 0 chr9 35472431 35472454 -82390173 + AT_rich Low_complexity Low_complexity 1 23 0 2158 105 0 7 chr9 35472610 35472905 -82389722 - AluY SINE Alu -18 293 1 21 0 0 0 chr9 35472965 35472986 -82389641 + AT_rich Low_complexity Low_complexity 1 21 0 1489 181 20 33 chr9 35472998 35473297 -82389330 + AluJb SINE Alu 1 295 -17 326 82 0 20 chr9 35473304 35473353 -82389274 - L1MC1 LINE L1 -19 6314 6267 2265 102 3 0 chr9 35473400 35473695 -82388932 + AluSp SINE Alu 3 298 -15 2236 121 0 0 chr9 35473786 35474091 -82388536 + AluSx SINE Alu 1 305 -7 1441 181 20 53 chr9 35474541 35474840 -82387787 - AluJb SINE Alu -13 289 1 2267 108 3 0 chr9 35474844 35475141 -82387486 - AluSx SINE Alu -14 298 1 223 239 30 0 chr9 35475404 35475471 -82387156 + (TA)n Simple_repeat Simple_repeat 1 69 0 1666 166 30 17 chr9 35475560 35475861 -82386766 - AluJo SINE Alu -7 305 1 782 75 0 0 chr9 35475911 35476005 -82386622 - AluSg SINE Alu -215 95 2 273 183 141 0 chr9 35476084 35476155 -82386472 - L1MC5 LINE L1 -272 7689 7609 239 189 0 75 chr9 35476181 35476234 -82386393 + Tigger7 DNA MER2_type 437 485 -2002 680 161 93 17 chr9 35476354 35476472 -82386155 + FLAM_A SINE Alu 1 127 -6 259 339 54 15 chr9 35476518 35476648 -82385979 - MIR SINE MIR -73 189 55 2273 91 21 0 chr9 35476973 35477258 -82385369 + AluSx SINE Alu 1 291 -21 2410 60 7 3 chr9 35477527 35477825 -82384802 + AluY SINE Alu 1 299 -12 1167 138 133 5 chr9 35477826 35478022 -82384605 + AluSg/x SINE Alu 73 293 -19 2323 63 0 3 chr9 35478074 35478359 -82384268 - AluY SINE Alu -11 300 17 312 138 0 0 chr9 35478690 35478755 -82383872 + (TC)n Simple_repeat Simple_repeat 1 65 0 1389 105 0 11 chr9 35478757 35478947 -82383680 - AluSq SINE Alu -121 192 5 535 213 63 0 chr9 35478975 35479102 -82383525 - MIR SINE MIR -30 232 98 1469 148 44 33 chr9 35479110 35479133 -82383494 + AluJb SINE Alu 8 29 -283 2520 139 49 45 chr9 35479133 35479228 -82383399 - MER83 LTR ERV1 0 448 355 1865 147 3 20 chr9 35479228 35479528 -82383099 + AluJb SINE Alu 1 295 -17 2520 139 49 45 chr9 35479528 35479878 -82382749 - MER83 LTR ERV1 -93 355 1 1469 148 44 33 chr9 35479878 35480125 -82382502 + AluJb SINE Alu 29 281 -31 180 111 0 0 chr9 35480126 35480153 -82382474 + (CAAT)n Simple_repeat Simple_repeat 2 28 0 359 236 57 38 chr9 35480155 35480261 -82382366 - MIR SINE MIR -152 110 3 1862 143 36 0 chr9 35480358 35480638 -82381989 - AluJb SINE Alu -22 290 1 1632 221 95 76 chr9 35480649 35480765 -82381862 - L1M4 LINE L1 -2962 3682 3570 1828 181 0 9 chr9 35480765 35481080 -82381547 - AluJb SINE Alu 0 312 1 1632 221 95 76 chr9 35481080 35481557 -82381070 - L1M4 LINE L1 -3074 3570 3066 1653 122 106 82 chr9 35481557 35481886 -82380741 + MER1B DNA MER1_type 1 337 0 1632 221 95 76 chr9 35481886 35482143 -82380484 - L1M4 LINE L1 -3578 3066 2815 * 2094 185 86 80 chr9 35482138 35482199 -82380428 - L1MD3 LINE L1 -166 7829 7770 1126 163 6 0 chr9 35482199 35482377 -82380250 - L1MB7 LINE L1 -19 6165 5987 2094 185 86 80 chr9 35482377 35482735 -82379892 - L1MD3 LINE L1 -225 7770 7416 418 211 33 11 chr9 35482735 35482825 -82379802 - MLT1F1 LTR MaLR -429 138 47 2094 185 86 80 chr9 35482825 35483176 -82379451 - L1MD3 LINE L1 -579 7416 6732 2090 113 10 0 chr9 35483184 35483476 -82379151 - AluSg SINE Alu -15 295 1 731 154 6 51 chr9 35483546 35483702 -82378925 - L1MB8 LINE L1 -5 6173 6025 2077 139 0 0 chr9 35483702 35483990 -82378637 + AluSx SINE Alu 2 289 -23 482 209 47 0 chr9 35483999 35484128 -82378499 - L1M4 LINE L1 -988 5158 5024 822 191 89 24 chr9 35484141 35484309 -82378318 - MER21B LTR ERV1 -138 725 547 2336 94 3 7 chr9 35484328 35484637 -82377990 + AluSc SINE Alu 1 308 -1 293 223 58 19 chr9 35484652 35484755 -82377872 - L1M4 LINE L1 -5116 1426 1320 1441 167 38 38 chr9 35484774 35485062 -82377565 + AluJb SINE Alu 1 288 -24 350 42 21 0 chr9 35485093 35485141 -82377486 + (TC)n Simple_repeat Simple_repeat 2 50 0 1712 165 24 0 chr9 35485167 35485464 -82377163 - AluJo SINE Alu 0 312 9 4041 229 57 51 chr9 35485474 35486733 -82375894 - L1M4 LINE L1 -5241 1301 35 524 221 35 73 chr9 35486749 35486999 -82375628 + L1ME4a LINE L1 5666 5913 -208 2541 67 0 0 chr9 35487269 35487568 -82375059 + AluSc SINE Alu 1 299 -10 2154 77 11 21 chr9 35488541 35488869 -82373758 - AluSg SINE Alu 0 325 1 935 294 6 6 chr9 35488872 35489192 -82373435 - L1M4 LINE L1 -3262 2884 2565 1988 145 20 0 chr9 35489406 35489710 -82372917 - AluSx SINE Alu -2 310 1 666 219 95 18 chr9 35490095 35490264 -82372363 - MLT1A2 LTR MaLR -37 337 156 1064 83 0 0 chr9 35490266 35490398 -82372229 - AluY SINE Alu -179 132 1 236 143 48 0 chr9 35490398 35490440 -82372187 - MLT1A2 LTR MaLR -204 161 118 1995 123 21 0 chr9 35490588 35490873 -82371754 - AluSg SINE Alu -18 292 2 1584 98 76 4 chr9 35491198 35491423 -82371204 + AluSg SINE Alu 1 241 -69 2189 100 0 0 chr9 35491424 35491703 -82370924 + AluSg SINE Alu 1 279 -31 2136 100 31 0 chr9 35491942 35492233 -82370394 - AluSg SINE Alu -10 300 1 458 111 0 0 chr9 35492343 35492406 -82370221 - AluS SINE Alu -255 63 1 2030 132 0 7 chr9 35492431 35492738 -82369889 + AluSx SINE Alu 1 305 0 417 161 0 0 chr9 35492896 35492952 -82369675 + AluS SINE Alu 2 57 -261 * 697 183 0 0 chr9 35492948 35493052 -82369575 + AluJb SINE Alu 131 234 -78 212 171 0 0 chr9 35493052 35493087 -82369540 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 395 129 0 14 chr9 35493454 35493524 -82369103 - L1MC1 LINE L1 0 6333 6265 205 280 194 21 chr9 35493825 35493918 -82368709 - MER5B DNA MER1_type -8 170 62 315 60 40 0 chr9 35493995 35494045 -82368582 - L1MB5 LINE L1 -8 6166 6115 604 174 22 0 chr9 35494046 35494138 -82368489 + FRAM SINE Alu 51 144 -32 195 42 0 0 chr9 35494146 35494170 -82368457 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 2637 195 13 11 chr9 35494171 35494291 -82368336 - L1MB5 LINE L1 -55 6119 6000 3411 214 93 87 chr9 35494291 35494694 -82367933 - L1MC4 LINE L1 -745 5401 5002 1851 146 14 0 chr9 35494694 35494998 -82367629 - AluSx SINE Alu 0 308 1 3411 214 93 87 chr9 35494998 35495047 -82367580 - L1MC4 LINE L1 -1144 5002 4955 260 75 0 50 chr9 35495047 35495087 -82367540 - Alu SINE Alu -265 38 1 3411 214 93 87 chr9 35495087 35495217 -82367410 - L1MC4 LINE L1 -1191 4955 4827 875 150 0 30 chr9 35495217 35495350 -82367277 + FLAM_C SINE Alu 1 129 -4 3411 214 93 87 chr9 35495350 35495499 -82367128 - L1MC4 LINE L1 -1319 4827 4680 1338 198 66 7 chr9 35495499 35495683 -82366944 - AluJo SINE Alu -7 305 96 1327 228 11 7 chr9 35495683 35495964 -82366663 + AluJb SINE Alu 1 282 -30 1338 198 66 7 chr9 35495964 35496067 -82366560 - AluJo SINE Alu -216 96 1 3411 214 93 87 chr9 35496067 35496836 -82365791 - L1MC4 LINE L1 -1466 4680 3917 2242 99 3 3 chr9 35496836 35497140 -82365487 - AluSx SINE Alu -8 304 1 3411 214 93 87 chr9 35497140 35497508 -82365119 - L1MC4 LINE L1 -2229 3917 4024 1975 121 7 26 chr9 35497508 35497814 -82364813 - AluY SINE Alu -10 301 2 3411 214 93 87 chr9 35497814 35497944 -82364683 - L1MC4 LINE L1 -2121 4025 3897 2524 39 0 0 chr9 35498092 35498377 -82364250 - AluY SINE Alu 0 311 27 2466 71 0 3 chr9 35498388 35498685 -82363942 - AluSp SINE Alu -17 296 1 2462 93 3 0 chr9 35498831 35499142 -82363485 - AluSp SINE Alu -1 312 1 2238 109 13 0 chr9 35499145 35499447 -82363180 - AluSg SINE Alu -4 306 1 38 22 0 0 chr9 35499516 35499561 -82363066 + AT_rich Low_complexity Low_complexity 1 45 0 21 23 0 47 chr9 35499655 35499678 -82362949 + AT_rich Low_complexity Low_complexity 1 23 -18 762 235 24 12 chr9 35499678 35499848 -82362779 + FAM SINE Alu 1 172 -3 21 23 0 47 chr9 35499848 35499867 -82362760 + AT_rich Low_complexity Low_complexity 23 41 0 2018 84 63 11 chr9 35500276 35500434 -82362193 - AluSx SINE Alu -13 299 151 2371 88 0 0 chr9 35500434 35500740 -82361887 - AluSg SINE Alu -4 306 1 2018 84 63 11 chr9 35500740 35500865 -82361762 - AluSx SINE Alu -161 151 1 21 0 0 0 chr9 35500943 35500964 -82361663 + AT_rich Low_complexity Low_complexity 1 21 0 514 214 38 0 chr9 35501622 35501753 -82360874 - L1MC3 LINE L1 -103 7682 7547 219 188 0 0 chr9 35501758 35501806 -82360821 + (TA)n Simple_repeat Simple_repeat 2 49 0 847 128 8 0 chr9 35501810 35501935 -82360692 - FLAM_C SINE Alu -17 126 1 380 90 0 15 chr9 35501977 35502044 -82360583 + (TCTCTG)n Simple_repeat Simple_repeat 1 66 0 804 207 14 0 chr9 35502044 35502189 -82360438 - AluJb SINE Alu -31 281 135 2125 175 58 14 chr9 35502211 35502645 -82359982 - L1MC3 LINE L1 -314 7471 7019 561 240 276 16 chr9 35502649 35502903 -82359724 - Charlie2a DNA MER1_type -877 1985 1666 1456 211 16 16 chr9 35502976 35503279 -82359348 - AluJb SINE Alu -7 305 3 830 136 0 0 chr9 35503280 35503398 -82359229 - AluJb SINE Alu -175 137 20 272 237 13 13 chr9 35503434 35503510 -82359117 + MIR SINE MIR 146 221 -41 2433 75 3 0 chr9 35503885 35504180 -82358447 + AluSp SINE Alu 1 296 -17 203 298 0 0 chr9 35507069 35507116 -82355511 + (CGTG)n Simple_repeat Simple_repeat 4 50 0 2082 128 7 0 chr9 35507147 35507488 -82355139 - AluSp SINE Alu 0 344 2 1585 186 26 0 chr9 35507822 35508091 -82354536 + AluJo SINE Alu 1 276 -36 2165 83 29 14 chr9 35508883 35509192 -82353435 - AluSp SINE Alu 0 313 1 265 274 36 24 chr9 35509348 35509432 -82353195 - MLT1K LTR MaLR -329 259 175 648 210 57 17 chr9 35509848 35509921 -82352706 - MER3 DNA MER1_type 0 209 140 1038 169 0 6 chr9 35509921 35510102 -82352525 + FAM SINE Alu 5 175 0 648 210 57 17 chr9 35510102 35510204 -82352423 - MER3 DNA MER1_type -69 140 27 2033 126 10 10 chr9 35510272 35510573 -82352054 + AluSx SINE Alu 1 301 -11 439 200 0 0 chr9 35510593 35510668 -82351959 + AluJ/FLAM SINE Alu 1 75 -237 983 69 0 0 chr9 35510668 35510784 -82351843 - AluY SINE Alu -193 118 3 2267 108 0 13 chr9 35511208 35511514 -82351113 - AluSg SINE Alu -8 302 1 488 314 59 20 chr9 35511574 35511727 -82350900 + L2 LINE L2 3109 3267 -5 2218 121 7 3 chr9 35511888 35512193 -82350434 + AluSx SINE Alu 1 306 -6 2286 85 36 13 chr9 35512194 35512500 -82350127 + AluSp SINE Alu 1 313 0 22 0 0 0 chr9 35512815 35512837 -82349790 + AT_rich Low_complexity Low_complexity 1 22 0 2431 84 3 0 chr9 35513410 35513706 -82348921 + AluSx SINE Alu 1 297 -15 2313 113 0 25 chr9 35514008 35514326 -82348301 - AluSg SINE Alu 0 310 1 1628 194 18 11 chr9 35514350 35514629 -82347998 - AluJo SINE Alu -31 281 1 2168 109 27 7 chr9 35515621 35515915 -82346712 + AluSx SINE Alu 2 301 -11 1863 161 24 0 chr9 35515922 35516213 -82346414 + AluJo SINE Alu 1 298 -14 554 227 188 81 chr9 35516718 35517053 -82345574 - L2 LINE L2 -1 3312 2942 2219 97 0 0 chr9 35517128 35517407 -82345220 + AluSg SINE Alu 1 279 -31 266 231 0 0 chr9 35518219 35518284 -82344343 + (ATG)n Simple_repeat Simple_repeat 2 66 0 1267 72 179 0 chr9 35525883 35526078 -82336549 - MER30 DNA MER1_type 0 230 1 205 258 65 0 chr9 35527178 35527240 -82335387 - MIR3 SINE MIR -13 195 130 353 273 52 58 chr9 35530718 35530787 -82331840 + L1MC4a LINE L1 5260 5328 -2480 2258 124 0 6 chr9 35530787 35531102 -82331525 + AluSq SINE Alu 1 313 0 353 273 52 58 chr9 35531102 35531186 -82331441 + L1MC4a LINE L1 5328 5412 -2396 268 288 157 53 chr9 35531219 35531523 -82331104 + L1MC4a LINE L1 5468 5832 -1976 180 0 0 0 chr9 35531523 35531543 -82331084 + (CAA)n Simple_repeat Simple_repeat 2 21 0 268 288 157 53 chr9 35531543 35531672 -82330955 + L1MC4a LINE L1 5832 5946 -1862 2501 89 0 0 chr9 35531683 35531986 -82330641 + AluSg SINE Alu 1 303 -7 1153 197 57 9 chr9 35532151 35532379 -82330248 - MER8 DNA MER2_type 0 239 1 1379 131 181 23 chr9 35536375 35536634 -82325993 - AluSg SINE Alu 0 300 1 229 368 0 21 chr9 35536654 35536749 -82325878 - L3 LINE CR1 -494 1083 991 1260 180 10 0 chr9 35537141 35537347 -82325280 - AluJb SINE Alu -102 210 3 2159 102 3 31 chr9 35537357 35537651 -82324976 - AluSx SINE Alu -16 296 11 407 151 0 27 chr9 35537653 35537748 -82324879 + AluS SINE Alu 223 310 0 353 281 26 0 chr9 35537755 35537869 -82324758 + L1M4 LINE L1 3305 3421 -2725 668 215 7 0 chr9 35537885 35538020 -82324607 + FLAM_A SINE Alu 6 141 -1 507 295 0 6 chr9 35538024 35538180 -82324447 + L1M4 LINE L1 3454 3608 -2538 314 233 23 58 chr9 35538206 35538292 -82324335 + HAL1 LINE L1 2239 2321 -186 1906 153 24 0 chr9 35538396 35538690 -82323937 + AluSx SINE Alu 5 305 -7 1867 121 17 47 chr9 35538693 35538991 -82323636 + AluSq SINE Alu 1 289 -24 1681 187 16 3 chr9 35539056 35539361 -82323266 - AluJb SINE Alu -3 309 1 817 185 0 15 chr9 35539363 35539498 -82323129 - AluJo/FLAM SINE Alu -179 133 1 2470 74 3 0 chr9 35539582 35539881 -82322746 + AluSx SINE Alu 1 300 -12 2273 101 3 19 chr9 35540257 35540564 -82322063 - AluSx SINE Alu -8 304 3 358 174 51 2 chr9 35540621 35540800 -82321827 + AluJb SINE Alu 79 298 -4 294 83 0 0 chr9 35540836 35540872 -82321755 + (T)n Simple_repeat Simple_repeat 1 36 0 2107 90 65 0 chr9 35540972 35541250 -82321377 - AluSg SINE Alu -14 296 1 2264 93 4 0 chr9 35541250 35541527 -82321100 - AluSp SINE Alu -34 279 1 774 203 0 0 chr9 35541527 35541660 -82320967 - AluJo SINE Alu -177 135 3 23 0 0 0 chr9 35541662 35541685 -82320942 + AT_rich Low_complexity Low_complexity 1 23 0 867 170 7 7 chr9 35541715 35541862 -82320765 - LTR39 LTR ERV1 0 783 637 2336 73 0 14 chr9 35541863 35542193 -82320434 + AluY SINE Alu 1 326 0 1572 199 3 10 chr9 35542224 35542520 -82320107 - AluJb SINE Alu -18 294 1 1162 149 22 0 chr9 35542532 35542713 -82319914 - AluSg/x SINE Alu -2 308 124 2127 104 0 14 chr9 35542730 35543017 -82319610 - AluSg SINE Alu -27 283 1 1925 157 7 3 chr9 35543025 35543330 -82319297 - AluJb SINE Alu -6 306 1 2821 100 5 2 chr9 35543347 35543758 -82318869 - MER75 DNA T2_type 0 514 103 366 155 0 0 chr9 35543756 35543814 -82318813 - AluJ/FLAM SINE Alu -240 62 5 * 1722 87 0 0 chr9 35543881 35544089 -82318538 + AluSx SINE Alu 1 208 -104 316 51 0 0 chr9 35544137 35544176 -82318451 + Alu SINE Alu 6 44 -257 649 73 0 0 chr9 35544179 35544261 -82318366 + AluSp/q SINE Alu 213 294 -19 831 155 0 0 chr9 35544261 35544377 -82318250 - AluJo/FLAM SINE Alu -185 117 2 195 42 0 0 chr9 35544398 35544422 -82318205 + (TTTCC)n Simple_repeat Simple_repeat 2 25 0 2122 113 24 7 chr9 35544430 35544722 -82317905 - AluSx SINE Alu -15 297 1 1869 72 4 4 chr9 35545048 35545283 -82317344 - AluY SINE Alu -14 297 63 1990 129 7 42 chr9 35545372 35545514 -82317113 + AluSx SINE Alu 3 148 -164 2406 72 3 0 chr9 35545514 35545807 -82316820 + AluY SINE Alu 1 294 -17 1990 129 7 42 chr9 35545807 35545974 -82316653 + AluSx SINE Alu 148 301 -11 22 56 0 0 chr9 35546025 35546061 -82316566 + AT_rich Low_complexity Low_complexity 1 36 0 797 157 0 0 chr9 35546061 35546176 -82316451 - FLAM_C SINE Alu -15 118 4 993 194 18 6 chr9 35546289 35546459 -82316168 + FAM SINE Alu 2 173 -2 2353 79 0 10 chr9 35546619 35546924 -82315703 + AluY SINE Alu 1 302 -9 233 300 0 0 chr9 35547235 35547295 -82315332 - MIR SINE MIR -133 129 70 316 78 39 0 chr9 35547397 35547448 -82315179 + Alu SINE Alu 244 296 -5 1837 170 10 0 chr9 35547473 35547762 -82314865 + AluJb SINE Alu 17 308 -4 1229 64 0 0 chr9 35547767 35547924 -82314703 + L1PA5 LINE L1 5998 6154 0 2348 62 0 17 chr9 35547928 35548217 -82314410 + AluY SINE Alu 1 284 -27 180 0 0 0 chr9 35548221 35548241 -82314386 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 1687 177 3 45 chr9 35548454 35548765 -82313862 + AluJo SINE Alu 1 298 -14 2360 155 22 50 chr9 35548988 35549446 -82313181 + MER65A LTR ERV1 1 445 0 2243 89 58 0 chr9 35549544 35549835 -82312792 - AluSg SINE Alu -2 308 1 2264 93 4 0 chr9 35549835 35550112 -82312515 - AluSp SINE Alu -34 279 1 774 203 0 0 chr9 35550112 35550245 -82312382 - AluJo SINE Alu -177 135 3 243 189 0 0 chr9 35550249 35550300 -82312327 - FLAM SINE Alu -1 132 82 867 170 7 7 chr9 35550300 35550447 -82312180 - LTR39 LTR ERV1 0 783 637 2429 63 0 17 chr9 35550448 35550747 -82311880 + AluY SINE Alu 1 294 -17 1147 138 6 0 chr9 35550747 35550914 -82311713 + AluSg/x SINE Alu 134 301 -11 22 56 0 0 chr9 35550965 35551001 -82311626 + AT_rich Low_complexity Low_complexity 1 36 0 797 157 0 0 chr9 35551001 35551116 -82311511 - FLAM_C SINE Alu -15 118 4 993 194 18 6 chr9 35551229 35551399 -82311228 + FAM SINE Alu 2 173 -2 2353 79 0 10 chr9 35551559 35551864 -82310763 + AluY SINE Alu 1 302 -9 236 300 0 0 chr9 35552175 35552235 -82310392 - MIR SINE MIR -133 129 70 2292 120 3 0 chr9 35552265 35552566 -82310061 - AluSp SINE Alu -11 302 1 1972 93 52 38 chr9 35552580 35552871 -82309756 - AluSc SINE Alu -14 295 1 2351 101 0 0 chr9 35553055 35553352 -82309275 - AluSq SINE Alu -16 297 1 2396 96 0 10 chr9 35553530 35553844 -82308783 - AluSx SINE Alu -1 311 1 2135 114 0 16 chr9 35553876 35554046 -82308581 - AluSg SINE Alu -8 302 138 2477 31 38 3 chr9 35554046 35554333 -82308294 - AluY SINE Alu -12 299 3 2135 114 0 16 chr9 35554333 35554468 -82308159 - AluSg SINE Alu -172 138 2 308 273 115 60 chr9 35554658 35554841 -82307786 - MIR SINE MIR 0 262 70 561 138 41 24 chr9 35554960 35555083 -82307544 - 7SK RNA RNA -68 125 1 664 202 8 0 chr9 35557232 35557351 -82305276 - FLAM_A SINE Alu -13 120 1 2327 59 20 3 chr9 35558378 35558682 -82303945 - AluY SINE Alu -1 310 2 1813 115 25 14 chr9 35559379 35559665 -82302962 + AluSg SINE Alu 1 289 -21 2091 88 16 13 chr9 35559677 35559985 -82302642 - AluY SINE Alu -2 309 1 1894 128 0 3 chr9 35560161 35560468 -82302159 - AluSx SINE Alu 0 306 1 795 211 31 0 chr9 35560471 35560632 -82301995 - AluJo/FRAM SINE Alu 0 302 137 2285 70 0 13 chr9 35560635 35560935 -82301692 - AluY SINE Alu -15 296 1 1490 158 140 0 chr9 35560940 35561205 -82301422 - AluSx SINE Alu 0 302 1 1396 179 60 8 chr9 35561257 35561525 -82301102 + AluJo SINE Alu 1 282 -30 1786 133 39 11 chr9 35561588 35561874 -82300753 + AluJb SINE Alu 5 298 -14 1485 167 37 0 chr9 35561971 35562241 -82300386 - AluJo SINE Alu -18 294 15 718 142 9 0 chr9 35562428 35562534 -82300093 - FLAM_C SINE Alu -25 118 12 2010 114 7 3 chr9 35562554 35562852 -82299775 - AluSg SINE Alu -11 299 1 410 216 106 76 chr9 35562953 35563014 -82299613 - L1ME1 LINE L1 -262 5904 5846 1988 125 0 3 chr9 35563014 35563309 -82299318 - AluSx SINE Alu -18 294 1 1513 107 4 37 chr9 35563319 35563562 -82299065 - AluSq SINE Alu -4 309 75 2028 107 3 38 chr9 35563562 35563880 -82298747 - AluSq SINE Alu -6 307 1 410 216 106 76 chr9 35563880 35564135 -82298492 - L1ME1 LINE L1 -327 5839 5566 647 207 79 6 chr9 35564144 35564308 -82298319 - MER105 DNA DNA -1 203 28 287 170 67 14 chr9 35564314 35564387 -82298240 - L1ME1 LINE L1 -646 5516 5455 588 174 0 0 chr9 35564479 35564577 -82298050 - FLAM_C SINE Alu -35 108 11 242 261 35 3 chr9 35564587 35564694 -82297933 - L1MDa LINE L1 -3968 2572 2482 2046 110 0 54 chr9 35564705 35564876 -82297751 - AluSg SINE Alu 0 300 121 2140 84 7 7 chr9 35564876 35565174 -82297453 - AluSp SINE Alu -15 298 1 2046 110 0 54 chr9 35565174 35565186 -82297441 - AluSg SINE Alu -179 121 110 6283 68 15 10 chr9 35565186 35566751 -82295876 - SVA Other Other -723 1386 46 2046 110 0 54 chr9 35566751 35566882 -82295745 - AluSg SINE Alu -190 110 1 1231 162 103 33 chr9 35566882 35567153 -82295474 - AluJb SINE Alu -8 304 15 1786 123 6 72 chr9 35567616 35567763 -82294864 + AluSx SINE Alu 1 115 -197 2203 92 7 0 chr9 35567763 35568068 -82294559 + AluY SINE Alu 1 307 -4 1786 123 6 72 chr9 35568068 35568252 -82294375 + AluSx SINE Alu 115 310 -2 242 239 159 18 chr9 35568364 35568477 -82294150 - L2 LINE L2 -5 3308 3180 2201 88 3 10 chr9 35568634 35568939 -82293688 + AluSp SINE Alu 1 303 -10 599 170 45 9 chr9 35569025 35569137 -82293490 - AluJb SINE Alu -7 305 190 1051 160 0 21 chr9 35569341 35569528 -82293099 - AluSg/x SINE Alu -5 305 123 2075 104 0 3 chr9 35569535 35569832 -82292795 - AluSx SINE Alu -16 296 1 2111 109 3 0 chr9 35570160 35570464 -82292163 - AluSc SINE Alu -4 305 1 2160 107 3 0 chr9 35571021 35571319 -82291308 + AluSq SINE Alu 1 299 -14 831 205 0 0 chr9 35571326 35571477 -82291150 + AluSg/x SINE Alu 148 298 -14 3787 95 44 2 chr9 35571478 35572027 -82290600 - L1MA1 LINE L1 -175 6127 5556 1921 139 27 0 chr9 35572121 35572416 -82290211 - AluSx SINE Alu -9 303 1 1511 151 53 28 chr9 35572919 35573203 -82289424 - AluJo SINE Alu -21 291 1 423 152 0 25 chr9 35573251 35573330 -82289297 - AluJ/FRAM SINE Alu 0 302 226 546 131 61 20 chr9 35573330 35573429 -82289198 + AluSg/x SINE Alu 100 202 -108 1745 90 8 0 chr9 35573451 35573685 -82288942 + AluSq SINE Alu 1 236 -77 880 131 6 120 chr9 35573685 35573764 -82288863 - AluSx SINE Alu -150 162 114 1572 105 9 0 chr9 35573764 35573992 -82288635 - AluSq SINE Alu -14 299 70 880 131 6 120 chr9 35573992 35574095 -82288532 - AluSx SINE Alu -198 114 1 2078 112 3 13 chr9 35574099 35574413 -82288214 - AluY SINE Alu 0 311 1 1390 151 6 70 chr9 35574418 35574583 -82288044 - AluJb SINE Alu -20 292 118 183 42 0 0 chr9 35574583 35574607 -82288020 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2256 52 0 14 chr9 35574607 35574894 -82287733 - AluY SINE Alu -28 283 1 1390 151 6 70 chr9 35574894 35575039 -82287588 - AluJb SINE Alu -192 120 1 2163 103 3 0 chr9 35575049 35575350 -82287277 - AluSg SINE Alu -8 302 1 885 140 0 22 chr9 35575368 35575504 -82287123 - FLAM_C SINE Alu 0 133 1 2069 107 10 7 chr9 35575514 35575813 -82286814 - AluSq SINE Alu -13 300 1 467 202 55 9 chr9 35575814 35575923 -82286704 - L1M4 LINE L1 -491 5693 5580 813 218 31 35 chr9 35575926 35576155 -82286472 - AluJo SINE Alu -13 299 72 241 157 235 0 chr9 35576155 35576206 -82286421 - Charlie3 DNA MER1_type -2641 69 7 1938 123 3 3 chr9 35576379 35576709 -82285918 + AluSq SINE Alu 1 330 0 2255 83 0 19 chr9 35577182 35577495 -82285132 - AluY SINE Alu -4 307 1 777 151 0 50 chr9 35577497 35577636 -82284991 - AluJo/FLAM SINE Alu -170 132 1 1336 117 5 10 chr9 35577667 35577872 -82284755 - AluSx SINE Alu -108 204 1 877 211 119 23 chr9 35578215 35578433 -82284194 + MIR SINE MIR 1 239 -23 739 178 0 22 chr9 35579196 35579331 -82283296 + FLAM_C SINE Alu 2 133 0 2090 111 0 10 chr9 35580076 35580373 -82282254 - AluSx SINE Alu -18 294 1 1941 84 62 0 chr9 35580712 35580987 -82281640 - AluSp SINE Alu -17 296 5 2149 100 3 0 chr9 35581003 35581304 -82281323 - AluY SINE Alu -9 302 1 2112 94 17 3 chr9 35581824 35582123 -82280504 - AluSc SINE Alu -6 303 1 2029 125 10 10 chr9 35582330 35582635 -82279992 + AluSx SINE Alu 1 305 -7 575 184 18 9 chr9 35582635 35582744 -82279883 - FLAM_A SINE Alu -32 110 1 1978 135 0 0 chr9 35582803 35583106 -82279521 - AluSq SINE Alu -10 303 1 2085 124 0 0 chr9 35583135 35583433 -82279194 + AluSx SINE Alu 1 298 -14 2069 75 0 11 chr9 35584125 35584405 -82278222 + AluY SINE Alu 22 298 -13 1962 120 3 17 chr9 35584440 35584739 -82277888 + AluSx SINE Alu 1 295 -17 1032 77 28 0 chr9 35584750 35584893 -82277734 + Tigger3(Golem) DNA MER2_type 2191 2337 -692 2086 92 34 7 chr9 35584893 35585185 -82277442 - AluSg SINE Alu -10 300 1 330 26 0 0 chr9 35585335 35585374 -82277253 + (TG)n Simple_repeat Simple_repeat 2 40 0 1447 181 22 4 chr9 35585375 35585646 -82276981 - L1MB3 LINE L1 -14 6169 5894 1908 113 0 15 chr9 35585666 35585940 -82276687 - AluSg SINE Alu -36 274 5 1553 208 7 91 chr9 35585946 35586171 -82276456 - L1MA6 LINE L1 -394 5906 5738 2364 70 0 10 chr9 35586171 35586485 -82276142 - AluY SINE Alu 0 311 1 1553 208 7 91 chr9 35586485 35586721 -82275906 - L1MA6 LINE L1 -562 5738 5484 408 117 17 0 chr9 35586746 35586806 -82275821 + U7 snRNA snRNA 2 62 -1 661 196 7 58 chr9 35586886 35587024 -82275603 - FLAM_A SINE Alu -2 131 1 231 245 0 0 chr9 35587057 35587106 -82275521 + L2 LINE L2 3264 3312 -1 2222 84 0 3 chr9 35587124 35587421 -82275206 - AluY SINE Alu -15 296 1 207 176 0 0 chr9 35588033 35588067 -82274560 + T-rich Low_complexity Low_complexity 4 37 0 2253 93 0 10 chr9 35588209 35588521 -82274106 + AluSx SINE Alu 1 309 -3 2099 107 0 23 chr9 35589632 35589804 -82272823 - AluSg SINE Alu -8 302 139 2318 69 7 3 chr9 35589804 35590107 -82272520 - AluSp SINE Alu -9 304 1 2099 107 0 23 chr9 35590107 35590243 -82272384 - AluSg SINE Alu -171 139 1 1925 102 0 53 chr9 35590909 35591212 -82271415 - AluSx SINE Alu -25 287 1 2751 157 25 50 chr9 35591212 35591576 -82271051 - L1MA4A LINE L1 -230 6073 5728 1083 126 0 16 chr9 35591576 35591757 -82270870 + L1MA4A LINE L1 6124 6302 -1 2751 157 25 50 chr9 35591757 35591990 -82270637 - L1MA4A LINE L1 -575 5728 5491 589 200 0 0 chr9 35592009 35592104 -82270523 - FRAM SINE Alu -62 114 20 1075 133 45 27 chr9 35592104 35592258 -82270369 - L1MA4A LINE L1 -746 5400 5331 1510 163 10 58 chr9 35592258 35592571 -82270056 - AluJo SINE Alu -14 298 1 1075 133 45 27 chr9 35592571 35592685 -82269942 - L1MA4A LINE L1 -815 5331 5221 1762 151 28 0 chr9 35592748 35593033 -82269594 + AluSx SINE Alu 1 293 -19 2022 114 13 7 chr9 35593774 35594081 -82268546 + AluSg SINE Alu 1 309 -1 311 202 12 0 chr9 35594785 35594869 -82267758 + CT-rich Low_complexity Low_complexity 3 87 0 1274 191 116 4 chr9 35595026 35595293 -82267334 + AluJo SINE Alu 2 298 -14 2029 103 0 27 chr9 35595367 35595668 -82266959 + AluSx SINE Alu 1 293 -19 838 125 125 12 chr9 35596203 35596348 -82266279 - AluSc SINE Alu -13 296 169 1836 141 7 0 chr9 35596348 35596645 -82265982 - AluSx SINE Alu -13 299 1 1950 123 7 13 chr9 35596645 35596953 -82265674 - AluSx SINE Alu -6 306 1 838 125 125 12 chr9 35596953 35596966 -82265661 - AluSc SINE Alu -139 170 119 2164 115 0 0 chr9 35597094 35597399 -82265228 - AluSx SINE Alu -7 305 1 640 93 0 0 chr9 35597489 35597575 -82265052 - AluSq SINE Alu -17 296 211 1029 91 0 7 chr9 35597575 35597718 -82264909 - AluSq SINE Alu -162 150 9 1759 148 7 13 chr9 35597820 35598125 -82264502 - AluSx SINE Alu -9 303 1 711 242 129 23 chr9 35598150 35598452 -82264175 - L1MC4 LINE L1 -11 8031 7698 2112 109 7 0 chr9 35598452 35598745 -82263882 - AluSx SINE Alu -17 295 1 1377 120 0 14 chr9 35600544 35600761 -82261866 - AluSq SINE Alu -6 307 94 1867 144 3 0 chr9 35601343 35601634 -82260993 + AluSp SINE Alu 15 306 -7 714 137 111 0 chr9 35601689 35601806 -82260821 + FLAM_C SINE Alu 2 131 -12 787 158 0 43 chr9 35601877 35602016 -82260611 + AluJo SINE Alu 3 135 -177 1940 140 3 3 chr9 35602040 35602340 -82260287 + AluSx SINE Alu 3 302 -10 290 126 97 97 chr9 35602361 35602450 -82260177 - L1MD3 LINE L1 -16 7979 7888 2133 109 7 0 chr9 35602450 35602753 -82259874 - AluSc SINE Alu -4 305 1 290 126 97 97 chr9 35602753 35602766 -82259861 - L1MD3 LINE L1 -106 7889 7877 313 250 50 0 chr9 35602766 35602846 -82259781 - MER58 DNA MER1_type -1 2419 131 808 106 57 0 chr9 35602853 35602976 -82259651 - AluSq/x SINE Alu -182 130 1 1258 91 5 27 chr9 35603101 35603287 -82259340 - AluSp SINE Alu -12 301 120 897 52 9 0 chr9 35603293 35603408 -82259219 - AluSc SINE Alu -18 291 176 1184 198 137 45 chr9 35603436 35603505 -82259122 + L1 LINE L1 3822 3883 -2263 1542 128 17 37 chr9 35603505 35603802 -82258825 + AluY SINE Alu 10 300 -11 1184 198 137 45 chr9 35603802 35603938 -82258689 + L1 LINE L1 3883 4005 -2141 1528 172 38 14 chr9 35603938 35604228 -82258399 - AluJb SINE Alu -15 297 1 1184 198 137 45 chr9 35604228 35604461 -82258166 + L1 LINE L1 4005 4350 -1796 475 326 80 84 chr9 35604583 35604731 -82257896 - HAL1b LINE L1 -708 640 493 1428 190 19 35 chr9 35604731 35605042 -82257585 - AluJo SINE Alu -6 306 1 475 326 80 84 chr9 35605042 35605177 -82257450 - HAL1b LINE L1 -855 493 359 2215 99 3 10 chr9 35605177 35605491 -82257136 - AluSx SINE Alu 0 312 1 475 326 80 84 chr9 35605491 35605835 -82256792 - HAL1b LINE L1 -989 359 15 1324 108 66 150 chr9 35605981 35606154 -82256473 - AluSx SINE Alu -6 306 173 2149 115 0 0 chr9 35606154 35606459 -82256168 - AluSx SINE Alu -7 305 1 1324 108 66 150 chr9 35606459 35606619 -82256008 - AluSx SINE Alu -139 173 1 2141 96 0 19 chr9 35606630 35606943 -82255684 - AluY SINE Alu -4 307 1 971 188 13 31 chr9 35606860 35606945 -82255682 - AluJo SINE Alu -92 220 1 777 151 0 50 chr9 35606945 35607084 -82255543 - AluJo/FLAM SINE Alu -170 132 1 1336 117 5 10 chr9 35607115 35607320 -82255307 - AluSx SINE Alu -108 204 1 877 211 119 23 chr9 35607659 35607877 -82254750 + MIR SINE MIR 1 239 -23 732 179 0 22 chr9 35608641 35608775 -82253852 + FLAM_C SINE Alu 3 133 0 2075 111 0 10 chr9 35609520 35609817 -82252810 - AluSx SINE Alu -18 294 1 1950 83 62 0 chr9 35610162 35610438 -82252189 - AluSp SINE Alu -16 297 5 2133 103 3 0 chr9 35610454 35610755 -82251872 - AluY SINE Alu -9 302 1 2128 90 17 3 chr9 35611275 35611574 -82251053 - AluSc SINE Alu -6 303 1 2021 125 10 10 chr9 35611781 35612085 -82250542 + AluSx SINE Alu 1 304 -8 575 184 18 9 chr9 35612085 35612194 -82250433 - FLAM_A SINE Alu -32 110 1 1978 135 0 0 chr9 35612253 35612556 -82250071 - AluSq SINE Alu -10 303 1 2127 120 0 0 chr9 35612585 35612886 -82249741 + AluSx SINE Alu 1 301 -11 2078 75 0 11 chr9 35613578 35613859 -82248768 + AluY SINE Alu 22 299 -12 1231 145 5 5 chr9 35613894 35614101 -82248526 + AluSx SINE Alu 1 207 -105 244 180 0 33 chr9 35614321 35614382 -82248245 - FAM SINE Alu 0 179 121 496 293 41 26 chr9 35614775 35615045 -82247582 - AluSx SINE Alu -22 290 17 252 0 0 0 chr9 35615259 35615287 -82247340 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 673 164 57 0 chr9 35615465 35615587 -82247040 + FLAM_A SINE Alu 10 138 -4 1784 149 20 3 chr9 35615809 35616104 -82246523 + AluJb SINE Alu 1 300 -12 204 40 0 0 chr9 35616165 35616190 -82246437 + (CGG)n Simple_repeat Simple_repeat 3 27 0 322 141 42 0 chr9 35618736 35618807 -82243820 + GA-rich Low_complexity Low_complexity 2 75 0 1684 112 154 0 chr9 35618939 35619198 -82243429 - AluSg SINE Alu -1 299 1 868 146 0 0 chr9 35619827 35619964 -82242663 + AluSq/x SINE Alu 1 137 -176 2194 84 13 7 chr9 35619964 35620274 -82242353 + AluSp SINE Alu 1 312 -1 2103 123 0 0 chr9 35620300 35620600 -82242027 + AluSx SINE Alu 1 300 -12 443 294 40 0 chr9 35620600 35620726 -82241901 - L1ME2 LINE L1 -122 6042 5912 392 138 5 13 chr9 35620770 35620989 -82241638 + AluJo SINE Alu 10 302 0 1492 150 20 41 chr9 35621012 35621306 -82241321 - AluJb SINE Alu -23 289 2 2127 117 3 0 chr9 35621317 35621625 -82241002 - AluSx SINE Alu -3 309 1 1999 197 33 5 chr9 35621668 35622059 -82240568 - MER65C LTR ERV1 0 461 60 434 193 41 0 chr9 35622066 35622182 -82240445 - AluSg/x SINE Alu -17 283 216 665 89 0 0 chr9 35622182 35622272 -82240355 - AluS SINE Alu -221 91 2 1065 88 0 0 chr9 35622355 35622492 -82240135 + AluSq/x SINE Alu 1 137 -176 1516 95 0 47 chr9 35622498 35622558 -82240069 + AluSg/x SINE Alu 84 145 -167 1805 50 0 0 chr9 35622558 35622776 -82239851 + AluY SINE Alu 82 299 -12 1516 95 0 47 chr9 35622776 35622947 -82239680 + AluSg/x SINE Alu 145 304 -8 198 0 0 0 chr9 35626424 35626446 -82236181 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 300 269 21 15 chr9 35627714 35627829 -82234798 + MIR SINE MIR 79 193 -15 252 284 68 14 chr9 35628342 35628416 -82234211 - Charlie8 DNA MER1_type -2190 227 150 2015 103 58 0 chr9 35628419 35628711 -82233916 + AluSx SINE Alu 2 310 -2 2345 155 22 50 chr9 35628809 35629267 -82233360 - MER65A LTR ERV1 0 445 1 1539 177 3 45 chr9 35629490 35629801 -82232826 - AluJo SINE Alu -14 298 1 249 303 56 14 chr9 35629871 35630013 -82232614 + L1ME LINE L1 5255 5402 -2406 180 0 0 0 chr9 35630015 35630035 -82232592 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 2244 62 0 17 chr9 35630035 35630327 -82232300 - AluY SINE Alu -24 287 1 1230 64 0 0 chr9 35630331 35630488 -82232139 - L1PA5 LINE L1 0 6154 5998 1712 166 10 0 chr9 35630493 35630782 -82231845 - AluJb SINE Alu -4 308 17 273 267 0 0 chr9 35630952 35631068 -82231559 + C-rich Low_complexity Low_complexity 1 116 0 209 232 14 0 chr9 35631176 35631245 -82231382 + C-rich Low_complexity Low_complexity 6 75 0 198 0 0 0 chr9 35633666 35633688 -82228939 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 300 269 21 15 chr9 35634956 35635071 -82227556 + MIR SINE MIR 79 193 -15 252 284 68 14 chr9 35635584 35635658 -82226969 - Charlie8 DNA MER1_type -2190 227 150 2156 90 10 7 chr9 35635661 35635962 -82226665 + AluSx SINE Alu 2 303 -9 2209 102 0 13 chr9 35636464 35636778 -82225849 - AluSg SINE Alu 0 310 1 2103 198 78 36 chr9 35636902 35637260 -82225367 - MER90 LTR ERV1 0 575 233 2087 112 0 0 chr9 35637260 35637569 -82225058 - AluSx SINE Alu 0 309 1 2103 198 78 36 chr9 35637569 35637744 -82224883 - MER90 LTR ERV1 -342 233 15 2139 114 3 0 chr9 35637744 35638052 -82224575 - AluSx SINE Alu -3 309 1 2103 198 78 36 chr9 35638052 35638068 -82224559 - MER90 LTR ERV1 -560 15 1 705 208 8 0 chr9 35638081 35638206 -82224421 - AluJo/FRAM SINE Alu -50 262 137 1579 89 5 5 chr9 35638207 35638431 -82224196 - AluSq SINE Alu 0 313 90 1685 178 3 16 chr9 35638435 35638738 -82223889 + AluJb SINE Alu 1 299 -13 245 182 45 15 chr9 35638767 35638833 -82223794 + L1ME LINE L1 5592 5659 -462 1987 126 0 3 chr9 35639448 35639759 -82222868 - AluSx SINE Alu 0 310 1 1937 130 0 32 chr9 35640007 35640322 -82222305 + AluSx SINE Alu 1 305 -7 2287 86 3 0 chr9 35640503 35640807 -82221820 - AluSp SINE Alu -7 306 2 1241 70 0 0 chr9 35640991 35641149 -82221478 + AluY SINE Alu 1 158 -153 1940 113 11 0 chr9 35641457 35641741 -82220886 - AluSx SINE Alu -25 287 1 1778 152 20 14 chr9 35641756 35642052 -82220575 - AluSx SINE Alu -14 298 1 263 27 0 27 chr9 35642054 35642091 -82220536 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1805 90 60 0 chr9 35642091 35642359 -82220268 - AluSx SINE Alu -28 284 1 329 338 15 0 chr9 35642418 35642554 -82220073 + L1ME LINE L1 5680 5817 -304 570 205 8 31 chr9 35642569 35642696 -82219931 + FLAM_C SINE Alu 6 129 -14 2288 53 0 30 chr9 35642831 35643131 -82219496 - AluSc SINE Alu -18 291 1 905 206 0 0 chr9 35643444 35643628 -82218999 - FRAM SINE Alu 0 176 1 1046 101 0 0 chr9 35644022 35644160 -82218467 - AluSq/x SINE Alu -174 138 1 951 100 87 0 chr9 35644161 35644311 -82218316 - L1MA6 LINE L1 -351 5949 5787 2284 75 0 3 chr9 35644321 35644614 -82218013 - AluY SINE Alu -19 292 1 314 150 12 124 chr9 35644614 35644651 -82217976 + MSTB LTR MaLR 361 380 -46 1248 56 56 0 chr9 35644651 35644812 -82217815 - L1PA11 LINE L1 0 6174 6005 314 150 12 124 chr9 35644812 35644855 -82217772 + MSTB LTR MaLR 380 426 0 1140 139 0 0 chr9 35644941 35645113 -82217514 + AluJb SINE Alu 134 305 -7 3209 308 80 38 chr9 35645212 35645470 -82217157 + HERV16 LTR ERVL 827 1073 -3923 1820 112 16 70 chr9 35645470 35645591 -82217036 + AluSx SINE Alu 11 137 -175 2302 84 0 10 chr9 35645591 35645902 -82216725 + AluY SINE Alu 1 308 -3 1820 112 16 70 chr9 35645902 35645919 -82216708 + AluSx SINE Alu 137 153 -159 1902 142 0 19 chr9 35645919 35646237 -82216390 + AluSp SINE Alu 1 312 -1 1820 112 16 70 chr9 35646237 35646409 -82216218 + AluSx SINE Alu 153 305 -7 2184 103 17 0 chr9 35646411 35646712 -82215915 + AluSq SINE Alu 1 306 -7 3209 308 80 38 chr9 35646712 35646869 -82215758 + HERV16 LTR ERVL 1073 1222 -3774 1646 177 0 17 chr9 35646869 35647168 -82215459 + AluJb SINE Alu 1 294 -18 3209 308 80 38 chr9 35647168 35647811 -82214816 + HERV16 LTR ERVL 1222 1836 -3160 2007 110 0 7 chr9 35647811 35648138 -82214489 + AluSc SINE Alu 1 325 0 3209 308 80 38 chr9 35648138 35648432 -82214195 + HERV16 LTR ERVL 1836 2116 -2880 2016 63 0 22 chr9 35648432 35648703 -82213924 + AluY SINE Alu 44 308 -3 3209 308 80 38 chr9 35648703 35649039 -82213588 + HERV16 LTR ERVL 2116 2678 -2318 948 123 53 47 chr9 35649045 35649216 -82213411 + AluJb SINE Alu 12 183 -129 754 193 113 0 chr9 35649391 35649541 -82213086 + AluSg/x SINE Alu 135 301 -11 2037 117 0 3 chr9 35649545 35649835 -82212792 + AluSq SINE Alu 1 289 -24 2221 89 3 0 chr9 35649988 35650280 -82212347 - AluSp SINE Alu -20 293 1 2140 110 7 0 chr9 35650284 35650583 -82212044 - AluSx SINE Alu -11 301 1 1995 115 0 30 chr9 35650740 35651045 -82211582 - AluSx SINE Alu -16 296 1 377 248 51 64 chr9 35651496 35651614 -82211013 - L2 LINE L2 -181 3091 2974 2217 114 0 0 chr9 35651614 35651922 -82210705 + AluSg SINE Alu 1 308 -2 377 248 51 64 chr9 35651922 35651960 -82210667 - L2 LINE L2 -298 2974 2937 575 131 0 0 chr9 35652086 35652198 -82210429 - AluJ SINE Alu 0 310 199 432 239 11 0 chr9 35652197 35652285 -82210342 - AluJ SINE Alu -193 119 31 * 246 313 222 16 chr9 35652293 35652721 -82209906 - L2 LINE L2 -508 2806 2291 319 264 109 36 chr9 35652805 35652915 -82209712 - L1MCa LINE L1 -4311 2115 1998 300 239 54 33 chr9 35653894 35653942 -82208685 - L1MC4 LINE L1 -1339 6703 6658 348 205 94 77 chr9 35653942 35654059 -82208568 - FLAM_A SINE Alu -11 122 4 300 239 54 33 chr9 35654059 35654085 -82208542 - L1MC4 LINE L1 -1384 6658 6634 1893 109 20 26 chr9 35654085 35654389 -82208238 - AluSx SINE Alu -10 302 1 300 239 54 33 chr9 35654389 35654405 -82208222 - L1MC4 LINE L1 -1408 6634 6610 292 279 43 57 chr9 35654514 35654654 -82207973 + L2 LINE L2 3175 3312 -1 196 241 39 98 chr9 35654727 35654838 -82207789 - L2 LINE L2 -279 2993 2887 1060 238 75 72 chr9 35655783 35656144 -82206483 - L2 LINE L2 0 3313 2952 842 180 0 2 chr9 35656556 35656785 -82205842 + AluJb SINE Alu 1 279 -33 237 248 178 10 chr9 35656795 35656851 -82205776 - L1ME4a LINE L1 -1 6120 6075 2071 110 7 3 chr9 35656851 35657144 -82205483 + AluSg SINE Alu 1 295 -10 191 35 0 35 chr9 35657144 35657173 -82205454 + (TAGA)n Simple_repeat Simple_repeat 3 30 0 237 248 178 10 chr9 35657178 35657222 -82205405 - L1ME4a LINE L1 -46 6075 6003 961 173 0 17 chr9 35657222 35657401 -82205226 - FRAM SINE Alu -2 174 1 928 164 0 12 chr9 35657456 35657621 -82205006 - FRAM SINE Alu -13 163 1 1893 103 4 0 chr9 35657631 35657892 -82204735 - AluSx SINE Alu -15 297 36 2197 122 0 7 chr9 35657961 35658265 -82204362 - AluSx SINE Alu -10 302 1 205 325 138 42 chr9 35658322 35658562 -82204065 + L2 LINE L2 2677 2939 -375 2154 106 44 0 chr9 35658619 35658912 -82203715 - AluSx SINE Alu -6 306 1 1682 149 52 4 chr9 35659031 35659327 -82203300 - AluJo SINE Alu 0 309 1 2117 115 13 0 chr9 35659465 35659769 -82202858 - AluSg SINE Alu -2 308 1 1815 142 0 57 chr9 35659774 35660105 -82202522 - AluJb SINE Alu 0 312 1 2104 106 40 10 chr9 35660217 35660518 -82202109 - AluSg SINE Alu 0 310 1 1156 159 62 5 chr9 35660598 35660806 -82201821 - AluJb SINE Alu -12 300 81 1878 152 3 3 chr9 35660862 35661152 -82201475 - AluJb SINE Alu -8 304 15 2238 129 3 0 chr9 35661207 35661518 -82201109 + AluSp SINE Alu 1 312 -1 1726 179 19 32 chr9 35661526 35661834 -82200793 + AluJo SINE Alu 1 304 -8 1606 182 0 27 chr9 35661962 35662098 -82200529 + AluJo SINE Alu 3 141 -171 1683 195 0 16 chr9 35662098 35662400 -82200227 + AluJb SINE Alu 1 297 -15 2562 63 0 0 chr9 35662400 35662699 -82199928 + AluY SINE Alu 1 299 -12 1606 182 0 27 chr9 35662401 35662858 -82199769 + AluJo SINE Alu 141 290 -22 2358 106 0 10 chr9 35663006 35663318 -82199309 + AluSg SINE Alu 1 309 -1 2235 103 17 0 chr9 35663371 35663663 -82198964 + AluSx SINE Alu 6 302 -10 1288 99 0 0 chr9 35663663 35663825 -82198802 + AluSg/x SINE Alu 134 295 -17 2103 136 3 7 chr9 35663828 35664137 -82198490 + AluSx SINE Alu 1 308 -4 2084 135 3 7 chr9 35664943 35665247 -82197380 - AluSx SINE Alu -9 303 1 2001 128 27 14 chr9 35665344 35665641 -82196986 + AluSg SINE Alu 3 303 -7 1309 164 0 26 chr9 35666268 35666499 -82196128 - AluSg/x SINE Alu -4 306 82 1641 178 14 4 chr9 35666524 35666669 -82195958 - AluJo SINE Alu -33 279 128 194 0 39 0 chr9 35666669 35666695 -82195932 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1641 178 14 4 chr9 35666695 35666825 -82195802 - AluJo SINE Alu -184 128 1 1347 158 48 34 chr9 35667172 35667210 -82195417 + MER46B DNA MER2_type 1 37 -2694 1967 165 0 25 chr9 35667210 35667526 -82195101 + AluJb SINE Alu 1 308 -4 2404 80 0 0 chr9 35667526 35667815 -82194812 + AluSc SINE Alu 1 289 -20 1347 158 48 34 chr9 35667815 35668067 -82194560 + MER46B DNA MER2_type 36 171 -65 2388 86 0 0 chr9 35668069 35668359 -82194268 + AluY SINE Alu 1 290 -21 2016 119 27 14 chr9 35668530 35668823 -82193804 + AluSg SINE Alu 7 303 -7 1315 165 0 22 chr9 35669450 35669680 -82192947 - AluSg/x SINE Alu -4 306 82 1641 178 14 4 chr9 35669705 35669850 -82192777 - AluJo SINE Alu -33 279 128 194 0 39 0 chr9 35669850 35669876 -82192751 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1641 178 14 4 chr9 35669876 35670006 -82192621 - AluJo SINE Alu -184 128 1 1942 168 0 25 chr9 35670391 35670707 -82191920 + AluJb SINE Alu 1 308 -4 1856 98 4 0 chr9 35670707 35670942 -82191685 + AluSq SINE Alu 1 236 -77 960 131 6 120 chr9 35670942 35671021 -82191606 - AluSx SINE Alu -150 162 114 1688 105 9 0 chr9 35671021 35671249 -82191378 - AluSq SINE Alu -14 299 70 960 131 6 120 chr9 35671249 35671352 -82191275 - AluSx SINE Alu -198 114 1 2233 112 3 13 chr9 35671356 35671670 -82190957 - AluY SINE Alu 0 311 1 1536 152 6 70 chr9 35671672 35671840 -82190787 - AluJb SINE Alu -17 295 118 183 42 0 0 chr9 35671840 35671864 -82190763 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2398 49 0 14 chr9 35671864 35672151 -82190476 - AluY SINE Alu -28 283 1 1536 152 6 70 chr9 35672151 35672296 -82190331 - AluJb SINE Alu -192 120 1 2311 103 3 0 chr9 35672306 35672607 -82190020 - AluSg SINE Alu -8 302 1 886 147 0 22 chr9 35672625 35672761 -82189866 - FLAM_C SINE Alu 0 133 1 2204 104 13 7 chr9 35672771 35673069 -82189558 - AluSq SINE Alu -13 300 1 441 202 55 9 chr9 35673070 35673179 -82189448 - L1M4 LINE L1 -491 5693 5580 935 240 9 13 chr9 35673182 35673411 -82189216 - AluJo SINE Alu -13 299 72 2349 106 0 10 chr9 35673635 35673947 -82188680 + AluSg SINE Alu 1 309 -1 2235 103 17 0 chr9 35674000 35674292 -82188335 + AluSx SINE Alu 6 302 -10 1288 99 0 0 chr9 35674292 35674454 -82188173 + AluSg/x SINE Alu 134 295 -17 2103 136 3 7 chr9 35674457 35674766 -82187861 + AluSx SINE Alu 1 308 -4 2084 135 3 7 chr9 35675572 35675876 -82186751 - AluSx SINE Alu -9 303 1 1608 158 21 0 chr9 35676334 35676575 -82186052 - AluJb SINE Alu -62 250 5 1536 184 58 7 chr9 35676629 35676906 -82185721 - AluJo SINE Alu -21 291 1 980 181 0 0 chr9 35676958 35677113 -82185514 + AluSq SINE Alu 1 155 -158 438 141 70 0 chr9 35677114 35677185 -82185442 + AluSg/x SINE Alu 192 267 -43 187 179 36 89 chr9 35677414 35677470 -82185157 - MER5A DNA MER1_type -131 58 6 2288 99 14 0 chr9 35677647 35677939 -82184688 - AluSx SINE Alu -16 296 1 2183 90 41 10 chr9 35678247 35678537 -82184090 - AluSq SINE Alu -14 299 1 543 127 13 0 chr9 35678559 35678638 -82183989 - AluSp SINE Alu -109 204 125 * 562 214 0 0 chr9 35678632 35678744 -82183883 + AluSg/x SINE Alu 200 311 -1 1646 147 51 38 chr9 35678785 35679077 -82183550 + AluJo SINE Alu 1 296 -16 2051 130 25 0 chr9 35679572 35679857 -82182770 + AluSx SINE Alu 1 292 -20 1540 161 31 35 chr9 35679859 35680111 -82182516 + MER46B DNA MER2_type 43 170 -2561 2598 60 0 0 chr9 35680111 35680409 -82182218 + AluY SINE Alu 1 298 -13 1540 161 31 35 chr9 35680409 35680473 -82182154 + MER46B DNA MER2_type 170 233 -3 2265 121 0 3 chr9 35680512 35680818 -82181809 - AluSx SINE Alu -7 305 1 2377 78 3 14 chr9 35681792 35682087 -82180540 + AluSp SINE Alu 1 292 -21 2448 100 0 0 chr9 35682226 35682535 -82180092 - AluSc SINE Alu 0 309 1 489 233 97 0 chr9 35682619 35682792 -82179835 + L1MA10 LINE L1 5987 6334 0 256 213 27 124 chr9 35682949 35683082 -82179545 - MIR SINE MIR -72 136 49 1607 147 34 59 chr9 35683269 35683589 -82179038 - AluJb SINE Alu 0 312 1 2207 127 3 3 chr9 35683590 35683897 -82178730 - AluSx SINE Alu -5 307 1 2099 103 41 10 chr9 35683983 35684273 -82178354 + AluSq SINE Alu 1 299 -14 2288 99 14 0 chr9 35684581 35684873 -82177754 + AluSx SINE Alu 1 296 -16 187 179 36 89 chr9 35685051 35685107 -82177520 + MER5A DNA MER1_type 6 58 -131 2088 126 10 13 chr9 35685808 35686109 -82176518 - AluJo SINE Alu -8 304 5 252 244 0 12 chr9 35686999 35687081 -82175546 + (TG)n Simple_repeat Simple_repeat 2 82 0 21 0 0 0 chr9 35688127 35688148 -82174479 + AT_rich Low_complexity Low_complexity 1 21 0 2287 97 3 0 chr9 35689384 35689674 -82172953 + AluSx SINE Alu 1 291 -21 1492 125 17 0 chr9 35689756 35689988 -82172639 - MER72 LTR ERV1 -27 695 460 2277 103 0 3 chr9 35691075 35691366 -82171261 + AluSc SINE Alu 1 290 -19 1839 171 27 0 chr9 35691494 35691793 -82170834 + AluJo SINE Alu 1 307 -5 1596 153 126 0 chr9 35691795 35692056 -82170571 + AluJo SINE Alu 1 294 -8 2257 109 0 3 chr9 35692058 35692351 -82170276 + AluSx SINE Alu 1 292 -20 265 148 23 171 chr9 35692401 35692466 -82170161 + MLT1D LTR MaLR 403 453 -52 2335 109 0 3 chr9 35692466 35692770 -82169857 + AluSx SINE Alu 1 303 -9 265 148 23 171 chr9 35692770 35692792 -82169835 + MLT1D LTR MaLR 453 477 -28 2094 115 38 0 chr9 35693021 35693309 -82169318 - AluSq SINE Alu -14 299 1 2036 156 0 13 chr9 35693310 35693617 -82169010 - AluSx SINE Alu -9 303 1 1766 125 3 83 chr9 35693621 35693818 -82168809 - AluSx SINE Alu 0 322 111 2309 109 3 10 chr9 35693818 35693997 -82168630 - AluSg SINE Alu 0 310 132 2508 83 3 0 chr9 35693997 35694299 -82168328 - AluSp SINE Alu -10 303 1 2309 109 3 10 chr9 35694299 35694431 -82168196 - AluSg SINE Alu -178 132 1 2122 111 7 7 chr9 35694432 35694729 -82167898 - AluSc SINE Alu -12 297 1 1766 125 3 83 chr9 35694729 35694876 -82167751 - AluSx SINE Alu -210 112 1 753 161 23 0 chr9 35694879 35695009 -82167618 - FLAM_C SINE Alu 0 133 1 2023 128 7 7 chr9 35695010 35695307 -82167320 - AluSc SINE Alu -12 297 1 234 175 0 0 chr9 35695703 35695743 -82166884 - AluSq SINE Alu -11 291 252 194 0 39 0 chr9 35695763 35695789 -82166838 + (TTTG)n Simple_repeat Simple_repeat 4 30 0 1977 92 0 37 chr9 35695790 35696061 -82166566 - AluSq SINE Alu -52 261 1 25 51 0 0 chr9 35696069 35696108 -82166519 + AT_rich Low_complexity Low_complexity 1 39 0 561 154 82 36 chr9 35696108 35696218 -82166409 - AluSx SINE Alu -14 296 182 2544 57 0 7 chr9 35696218 35696519 -82166108 + AluY SINE Alu 1 299 -12 1495 93 10 0 chr9 35696519 35696712 -82165915 - AluSx SINE Alu -116 196 1 26 0 0 0 chr9 35696712 35696738 -82165889 + AT_rich Low_complexity Low_complexity 1 26 0 309 149 0 30 chr9 35696857 35696924 -82165703 + AluSc SINE Alu 234 298 -1 1960 142 7 7 chr9 35696967 35697256 -82165371 - AluJo SINE Alu -8 304 16 2652 48 0 13 chr9 35697510 35697823 -82164804 + AluY SINE Alu 1 309 -2 2328 102 0 7 chr9 35697835 35698140 -82164487 + AluSg SINE Alu 1 303 -7 649 319 104 5 chr9 35698405 35698796 -82163831 + MLT1K LTR MaLR 3 588 0 2520 77 0 10 chr9 35698971 35699284 -82163343 + AluY SINE Alu 1 310 -1 1676 151 11 18 chr9 35699324 35699602 -82163025 - AluJo SINE Alu -32 280 5 2049 122 3 46 chr9 35699705 35700009 -82162618 - AluSx SINE Alu -21 291 1 274 255 31 35 chr9 35700042 35700081 -82162546 - L1MC/D LINE L1 -615 5551 5513 1977 137 0 23 chr9 35700081 35700381 -82162246 + AluSx SINE Alu 1 293 -19 274 255 31 35 chr9 35700381 35700469 -82162158 - L1MC/D LINE L1 -653 5513 5473 185 125 75 0 chr9 35700473 35700513 -82162114 + CT-rich Low_complexity Low_complexity 3 45 0 2016 119 0 11 chr9 35701074 35701352 -82161275 + AluSx SINE Alu 1 275 -37 189 74 0 0 chr9 35701352 35701379 -82161248 + (CAA)n Simple_repeat Simple_repeat 1 27 0 2335 82 3 0 chr9 35701512 35701803 -82160824 - AluY SINE Alu -3 308 17 198 310 14 14 chr9 35702206 35702277 -82160350 - MIR3 SINE MIR -20 188 118 368 319 162 9 chr9 35702357 35702573 -82160054 + MIR SINE MIR 14 262 0 597 272 123 5 chr9 35702895 35703090 -82159537 + MER21B LTR ERV1 41 258 -605 2145 103 0 63 chr9 35703093 35703412 -82159215 + AluSx SINE Alu 1 299 -13 1304 98 0 0 chr9 35703412 35703575 -82159052 + AluSq SINE Alu 134 296 -17 2133 103 4 4 chr9 35703579 35703886 -82158741 + AluSc SINE Alu 1 307 0 1972 202 84 17 chr9 35703915 35704409 -82158218 + MER21B LTR ERV1 366 862 -1 512 272 112 24 chr9 35704432 35704601 -82158026 + MIR SINE MIR 20 203 -59 877 241 0 0 chr9 35704976 35705142 -82157485 - FAM SINE Alu -9 166 1 30 83 0 0 chr9 35705149 35705221 -82157406 + AT_rich Low_complexity Low_complexity 1 72 0 316 309 20 53 chr9 35705415 35705567 -82157060 - L1MC4 LINE L1 -295 7747 7601 2260 69 69 14 chr9 35705568 35705856 -82156771 - AluSc SINE Alu -5 304 1 1545 171 6 76 chr9 35705856 35706009 -82156618 - AluJo SINE Alu -17 295 174 1614 95 9 0 chr9 35706009 35706220 -82156407 + AluSg/x SINE Alu 87 299 -11 1545 171 6 76 chr9 35706220 35706382 -82156245 - AluJo SINE Alu -138 174 2 377 260 0 0 chr9 35706383 35706471 -82156156 + L1MC4a LINE L1 5513 5591 -530 332 263 63 11 chr9 35706475 35706570 -82156057 + L1MC4a LINE L1 5863 5962 -1846 * 356 225 13 49 chr9 35706558 35706659 -82155968 + L1MC4 LINE L1 1995 6983 -1339 1978 90 27 111 chr9 35706764 35707097 -82155530 + AluSx SINE Alu 1 305 -7 507 274 90 24 chr9 35707112 35707324 -82155303 - LTR33A LTR ERVL -277 246 21 2562 53 0 3 chr9 35707355 35707654 -82154973 + AluY SINE Alu 1 298 -13 795 209 70 0 chr9 35707654 35707812 -82154815 + AluJo/FRAM SINE Alu 134 302 -10 1465 163 17 57 chr9 35707817 35708117 -82154510 + AluJo SINE Alu 2 289 -23 2211 109 0 3 chr9 35708117 35708411 -82154216 - AluY SINE Alu -18 293 1 26 0 0 0 chr9 35708414 35708440 -82154187 + AT_rich Low_complexity Low_complexity 1 26 0 1646 134 3 45 chr9 35708560 35708874 -82153753 + AluSg SINE Alu 5 305 -5 1607 147 34 59 chr9 35708875 35709195 -82153432 + AluJb SINE Alu 1 312 0 256 213 27 124 chr9 35709382 35709515 -82153112 + MIR SINE MIR 49 136 -72 517 227 97 0 chr9 35709672 35709845 -82152782 - L1MA10 LINE L1 0 6334 5987 2281 93 0 3 chr9 35709929 35710231 -82152396 + AluSc SINE Alu 1 301 -8 1390 151 6 70 chr9 35710241 35710386 -82152241 + AluJb SINE Alu 1 118 -194 2270 49 0 14 chr9 35710386 35710697 -82151930 + AluY SINE Alu 1 307 0 1390 151 6 70 chr9 35710697 35710862 -82151765 + AluJb SINE Alu 118 292 -20 2078 112 3 13 chr9 35710867 35711181 -82151446 + AluY SINE Alu 1 311 0 915 141 5 115 chr9 35711185 35711288 -82151339 + AluSx SINE Alu 1 75 -237 1572 105 9 0 chr9 35711288 35711516 -82151111 + AluSq SINE Alu 70 299 -14 915 141 5 115 chr9 35711516 35711604 -82151023 + AluSx SINE Alu 75 171 -141 568 131 12 0 chr9 35711605 35711689 -82150938 - AluSq SINE Alu -87 226 142 642 167 0 0 chr9 35711791 35711887 -82150740 + FRAM SINE Alu 55 150 -26 423 0 0 0 chr9 35711891 35711938 -82150689 + (TAGA)n Simple_repeat Simple_repeat 1 47 0 373 95 48 16 chr9 35711938 35712001 -82150626 - AluSg SINE Alu -193 107 43 791 125 0 17 chr9 35712020 35712140 -82150487 - FLAM_C SINE Alu -15 118 1 1129 314 56 43 chr9 35712155 35712348 -82150279 + HERVL LTR ERVL 2669 2858 -2796 2331 71 10 6 chr9 35712348 35712659 -82149968 - AluSx SINE Alu 0 312 1 1129 314 56 43 chr9 35712659 35712964 -82149663 + HERVL LTR ERVL 2858 3179 -2475 1645 198 50 33 chr9 35712964 35713323 -82149304 + MLT1A1 LTR MaLR 1 365 0 1129 314 56 43 chr9 35713323 35713431 -82149196 + HERVL LTR ERVL 3179 3284 -2370 2037 114 0 17 chr9 35713449 35713747 -82148880 + AluSx SINE Alu 1 293 -19 2081 118 3 3 chr9 35713839 35714135 -82148492 + AluSx SINE Alu 1 296 -16 596 331 43 37 chr9 35714400 35714658 -82147969 + HERVL LTR ERVL 3764 4028 -1736 1724 140 86 73 chr9 35714658 35715043 -82147584 - MLT1B LTR MaLR 0 390 1 596 331 43 37 chr9 35715043 35715246 -82147381 + HERVL LTR ERVL 4028 4228 -1536 1602 169 4 4 chr9 35715383 35715655 -82146972 - AluJo SINE Alu -30 282 11 232 279 140 0 chr9 35715715 35715894 -82146733 - L1P LINE L1 -758 5388 5185 714 316 38 14 chr9 35715991 35716361 -82146266 + L1MEc LINE L1 67 445 -5951 688 192 41 0 chr9 35716397 35716543 -82146084 - MER67A LTR ERV1 0 543 392 2239 92 0 3 chr9 35716580 35716885 -82145742 + AluSq SINE Alu 1 304 -9 2144 101 0 3 chr9 35716895 35717193 -82145434 + AluSg SINE Alu 2 298 -12 1864 128 47 0 chr9 35717195 35717492 -82145135 + AluSx SINE Alu 1 311 -1 2046 187 88 29 chr9 35717506 35717950 -82144677 - MER67B LTR ERV1 -140 521 52 775 115 0 33 chr9 35717964 35718086 -82144541 - AluSp/q SINE Alu 0 313 196 322 141 42 0 chr9 35718642 35718713 -82143914 + GA-rich Low_complexity Low_complexity 2 75 0 1684 112 154 0 chr9 35718845 35719104 -82143523 - AluSg SINE Alu -1 299 1 628 241 0 7 chr9 35719734 35719871 -82142756 + AluSq/x SINE Alu 2 137 -176 1866 114 17 7 chr9 35719882 35720180 -82142447 + AluSq SINE Alu 12 312 -1 2315 84 0 0 chr9 35720206 35720504 -82142123 + AluSq SINE Alu 1 298 -15 565 216 161 55 chr9 35720506 35720798 -82141829 - MLT1J LTR MaLR -74 437 115 423 245 0 9 chr9 35720833 35720939 -82141688 + AluSq/x SINE Alu 2 106 -207 442 315 63 9 chr9 35720939 35721243 -82141384 - HERVL LTR ERVL -1127 4361 4039 6040 41 11 18 chr9 35721353 35722189 -82140438 + SVA Other Other 635 1386 0 487 222 0 26 chr9 35722200 35722317 -82140310 + AluJb SINE Alu 116 229 -83 194 62 31 0 chr9 35722460 35722492 -82140135 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2007 109 3 3 chr9 35722494 35722777 -82139850 - AluSx SINE Alu -29 283 1 1793 157 3 7 chr9 35722851 35723150 -82139477 + AluJb SINE Alu 1 298 -14 198 0 0 0 chr9 35723556 35723578 -82139049 + (A)n Simple_repeat Simple_repeat 1 22 0 792 181 0 0 chr9 35723799 35723932 -82138695 + FLAM_C SINE Alu 7 139 -4 441 262 0 0 chr9 35723932 35724035 -82138592 + MLT1F1 LTR MaLR 23 125 -442 2520 161 89 30 chr9 35724035 35724594 -82138033 + L1MD3 LINE L1 7404 7995 0 325 346 19 37 chr9 35724605 35724767 -82137860 + L1MEd LINE L1 892 1050 -5069 1943 141 0 3 chr9 35724769 35725073 -82137554 + AluSx SINE Alu 1 303 -9 1055 157 6 0 chr9 35725073 35725245 -82137382 + AluSg/x SINE Alu 132 304 -6 369 281 79 9 chr9 35725304 35725418 -82137209 + L1M4 LINE L1 13 134 -6408 2197 118 0 0 chr9 35725420 35725725 -82136902 + AluSx SINE Alu 1 305 -7 1092 206 181 8 chr9 35725882 35726275 -82136352 + L1M4 LINE L1 4742 5202 -944 543 196 69 144 chr9 35726384 35726508 -82136119 + MIR SINE MIR 11 113 -149 659 100 0 0 chr9 35726508 35726598 -82136029 + HY4 scRNA scRNA 1 90 -3 543 196 69 144 chr9 35726598 35726728 -82135899 + MIR SINE MIR 113 251 -11 2181 99 3 0 chr9 35726802 35727104 -82135523 + AluY SINE Alu 1 303 -8 246 254 148 8 chr9 35727182 35727304 -82135323 + L1MC4a LINE L1 6195 6333 -1475 1494 148 39 8 chr9 35727313 35727569 -82135058 + MER21A LTR ERV1 1 264 -667 2905 153 113 12 chr9 35727574 35728079 -82134548 + MER21A LTR ERV1 376 931 0 1931 123 3 16 chr9 35728082 35728390 -82134237 - AluSx SINE Alu -8 304 1 807 153 0 28 chr9 35728675 35728819 -82133808 + FLAM_C SINE Alu 1 140 -3 2318 89 0 3 chr9 35728877 35729180 -82133447 - AluSg SINE Alu -8 302 1 765 173 0 0 chr9 35729271 35729398 -82133229 + FLAM_C SINE Alu 1 127 -6 48 0 0 0 chr9 35729398 35729446 -82133181 + AT_rich Low_complexity Low_complexity 1 48 0 621 192 39 39 chr9 35730018 35730148 -82132479 + FLAM_C SINE Alu 2 131 -12 230 245 255 11 chr9 35730149 35730243 -82132384 + MER5A DNA MER1_type 73 189 0 365 175 0 0 chr9 35730251 35730308 -82132319 + MER3 DNA MER1_type 1 57 -152 1942 132 0 43 chr9 35730466 35730792 -82131835 + AluJb SINE Alu 1 312 0 1987 132 0 0 chr9 35730825 35731120 -82131507 + AluSx SINE Alu 2 296 -16 1161 27 41 0 chr9 35731225 35731371 -82131256 - L1PA13 LINE L1 -4 6159 6008 1994 119 3 0 chr9 35731478 35731785 -82130842 + AluSp SINE Alu 1 308 0 2100 127 0 0 chr9 35731925 35732224 -82130403 + AluSx SINE Alu 1 299 -13 2233 99 0 0 chr9 35732434 35732738 -82129889 - AluSq SINE Alu -9 304 1 768 181 0 15 chr9 35732848 35732981 -82129646 + FLAM_C SINE Alu 3 133 0 870 206 78 37 chr9 35734169 35734205 -82128422 + L1ME LINE L1 5083 5116 -1048 2411 80 0 0 chr9 35734205 35734518 -82128109 + AluSq SINE Alu 1 313 0 870 206 78 37 chr9 35734518 35734928 -82127699 + L1ME LINE L1 5116 5541 -623 289 284 105 42 chr9 35735359 35735540 -82127087 + MIR SINE MIR 3 190 -67 2017 130 0 0 chr9 35735542 35735849 -82126778 - AluSx SINE Alu -5 307 1 1647 168 3 7 chr9 35735856 35736147 -82126480 - AluJo SINE Alu -22 290 1 2236 98 3 0 chr9 35736179 35736486 -82126141 + AluSq SINE Alu 1 308 -5 2092 84 0 4 chr9 35736491 35736765 -82125862 + AluSc SINE Alu 1 273 -36 2102 77 3 20 chr9 35737386 35737683 -82124944 + AluSp SINE Alu 6 297 -16 604 136 64 16 chr9 35738275 35738400 -82124227 + L1MD3 LINE L1 6918 7048 -947 * 1857 202 38 58 chr9 35738382 35738650 -82123977 + L1MD3 LINE L1 7513 7768 -227 1765 148 0 37 chr9 35738650 35738974 -82123653 + AluJb SINE Alu 1 312 0 1857 202 38 58 chr9 35738974 35739185 -82123442 + L1MD3 LINE L1 7768 7982 -13 29 0 0 0 chr9 35739194 35739223 -82123404 + AT_rich Low_complexity Low_complexity 1 29 0 2239 92 0 3 chr9 35739223 35739529 -82123098 + AluSg SINE Alu 1 305 -5 2946 247 77 107 chr9 35739538 35740746 -82121881 + L1M3b LINE L1 11 1254 -5027 2045 137 0 0 chr9 35740746 35741045 -82121582 + AluSx SINE Alu 1 299 -13 2946 247 77 107 chr9 35741045 35741154 -82121473 + L1M3b LINE L1 1254 1365 -4916 765 147 39 8 chr9 35741154 35741283 -82121344 + FLAM_C SINE Alu 1 133 0 2946 247 77 107 chr9 35741283 35741370 -82121257 + L1M3b LINE L1 1365 1453 -4828 2095 113 0 0 chr9 35741370 35741652 -82120975 + AluSg SINE Alu 1 282 -28 351 0 0 0 chr9 35741658 35741697 -82120930 + (CA)n Simple_repeat Simple_repeat 2 40 0 2946 247 77 107 chr9 35741697 35741851 -82120776 + L1M3b LINE L1 1458 1530 -4751 1431 172 10 57 chr9 35741851 35741986 -82120641 + AluJb SINE Alu 1 141 -164 2141 85 24 3 chr9 35741986 35742279 -82120348 + AluSq SINE Alu 1 299 -14 1431 172 10 57 chr9 35742279 35742462 -82120165 + AluJb SINE Alu 141 305 0 663 226 0 0 chr9 35742516 35742631 -82119996 + FLAM_A SINE Alu 1 115 -18 2167 77 31 0 chr9 35742698 35742984 -82119643 + AluSq SINE Alu 1 295 -18 1787 164 7 7 chr9 35743107 35743417 -82119210 + AluJb SINE Alu 3 312 0 979 76 0 8 chr9 35743556 35743688 -82118939 + AluSp SINE Alu 2 132 -181 2307 78 0 7 chr9 35743691 35744000 -82118627 + AluSq SINE Alu 1 307 -6 2335 67 3 0 chr9 35744000 35744300 -82118327 + AluY SINE Alu 1 301 -10 488 285 146 27 chr9 35744313 35744608 -82118019 + LTR16A1 LTR ERVL 123 452 -5 691 271 45 41 chr9 35744614 35744858 -82117769 + HERV16 LTR ERVL 2 246 -4750 871 297 16 39 chr9 35744892 35745102 -82117525 + HERV16 LTR ERVL 343 545 -4451 1736 168 27 0 chr9 35745102 35745394 -82117233 + AluJb SINE Alu 1 300 -12 871 297 16 39 chr9 35745394 35745489 -82117138 + HERV16 LTR ERVL 545 641 -4355 1905 133 86 15 chr9 35745490 35745829 -82116798 + MSTA LTR MaLR 2 364 -64 2388 63 0 0 chr9 35745829 35746129 -82116498 - AluY SINE Alu -11 300 1 2192 106 3 0 chr9 35746409 35746721 -82115906 + AluSp SINE Alu 1 313 0 244 336 19 10 chr9 35746766 35746870 -82115757 + L3 LINE CR1 1462 1566 -11 723 84 0 0 chr9 35746910 35747005 -82115622 - AluY SINE Alu -14 297 203 2060 70 0 0 chr9 35747007 35747265 -82115362 - AluY SINE Alu -53 258 1 1576 147 4 12 chr9 35747265 35747523 -82115104 - AluJo SINE Alu -21 291 35 207 0 0 0 chr9 35748080 35748103 -82114524 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 317 141 77 0 chr9 35748184 35748262 -82114365 + L1MCc LINE L1 32 115 -6308 * 870 246 44 35 chr9 35748260 35748736 -82113891 + L1MCc LINE L1 1296 1532 -4891 1036 166 5 26 chr9 35748736 35748865 -82113762 - AluJo SINE Alu -73 239 114 2071 112 0 22 chr9 35748865 35749178 -82113449 + AluSx SINE Alu 1 306 -6 1036 166 5 26 chr9 35749178 35749241 -82113386 - AluJo SINE Alu -198 114 51 468 0 0 0 chr9 35749244 35749296 -82113331 + (CA)n Simple_repeat Simple_repeat 1 52 0 715 161 19 52 chr9 35749306 35749461 -82113166 + L1MA10 LINE L1 6180 6329 -5 2315 87 0 10 chr9 35749594 35749906 -82112721 - AluY SINE Alu -2 309 1 21 57 0 0 chr9 35750162 35750197 -82112430 + AT_rich Low_complexity Low_complexity 1 35 0 216 188 0 0 chr9 35751470 35751518 -82111109 + A-rich Low_complexity Low_complexity 1 48 0 967 84 0 21 chr9 35751646 35751788 -82110839 + AluY SINE Alu 1 139 -172 2151 106 7 0 chr9 35751900 35752203 -82110424 - AluSc SINE Alu -4 305 1 313 250 50 0 chr9 35752216 35752296 -82110331 - MER58 DNA MER1_type -1 2419 131 808 106 57 0 chr9 35752303 35752426 -82110201 - AluSq/x SINE Alu -183 130 1 1258 91 5 27 chr9 35752551 35752737 -82109890 - AluSp SINE Alu -12 301 120 897 52 9 0 chr9 35752743 35752858 -82109769 - AluSc SINE Alu -18 291 176 730 196 0 93 chr9 35752886 35752953 -82109674 + L1 LINE L1 3822 3894 -2252 2138 84 0 10 chr9 35752953 35753250 -82109377 + AluY SINE Alu 7 300 -11 730 196 0 93 chr9 35753250 35753386 -82109241 + L1 LINE L1 3894 4006 -2140 1528 172 38 14 chr9 35753386 35753676 -82108951 - AluJb SINE Alu -15 297 1 1184 150 35 9 chr9 35753683 35753909 -82108718 + L1 LINE L1 4119 4350 -1796 475 326 80 84 chr9 35754031 35754179 -82108448 - HAL1b LINE L1 -708 640 493 1428 190 19 35 chr9 35754179 35754490 -82108137 - AluJo SINE Alu -6 306 1 475 326 80 84 chr9 35754490 35754625 -82108002 - HAL1b LINE L1 -855 493 359 2215 99 3 10 chr9 35754625 35754939 -82107688 - AluSx SINE Alu 0 312 1 475 326 80 84 chr9 35754939 35755283 -82107344 - HAL1b LINE L1 -989 359 15 1324 108 66 150 chr9 35755429 35755602 -82107025 - AluSx SINE Alu -6 306 173 2149 115 0 0 chr9 35755602 35755907 -82106720 - AluSx SINE Alu -7 305 1 1324 108 66 150 chr9 35755907 35756067 -82106560 - AluSx SINE Alu -139 173 1 2386 65 0 7 chr9 35756078 35756387 -82106240 - AluY SINE Alu -4 307 1 924 185 15 10 chr9 35756387 35756582 -82106045 - AluJb SINE Alu -12 300 105 351 337 22 48 chr9 35756584 35756857 -82105770 + L1ME LINE L1 5393 5658 -463 2225 105 3 0 chr9 35756868 35757172 -82105455 + AluSq SINE Alu 1 305 -8 1494 128 0 4 chr9 35757181 35757407 -82105220 + AluSq SINE Alu 1 225 -88 747 95 19 0 chr9 35757407 35757512 -82105115 + AluSg/x SINE Alu 190 296 -14 1446 151 106 7 chr9 35757557 35757841 -82104786 + AluSx SINE Alu 1 312 0 1267 218 16 65 chr9 35757900 35758207 -82104420 + AluJb SINE Alu 1 292 -10 2319 71 7 0 chr9 35758213 35758510 -82104117 + AluSg SINE Alu 1 299 -11 1291 196 52 15 chr9 35758634 35758905 -82103722 + AluJb SINE Alu 1 281 -31 23 33 0 0 chr9 35758910 35758940 -82103687 + AT_rich Low_complexity Low_complexity 1 30 0 1758 202 19 60 chr9 35759219 35759700 -82102927 + MER65C LTR ERV1 1 461 0 449 236 111 14 chr9 35760323 35760467 -82102160 - L1MD3 LINE L1 -8 7987 7830 1254 170 9 106 chr9 35760609 35760938 -82101689 + AluSx SINE Alu 2 298 -4 308 77 0 0 chr9 35760939 35760978 -82101649 + Alu SINE Alu 248 286 -16 492 18 0 0 chr9 35760980 35761037 -82101590 + (CATA)n Simple_repeat Simple_repeat 4 60 0 812 163 15 0 chr9 35761037 35761172 -82101455 + AluSg/x SINE Alu 158 294 -16 984 93 16 0 chr9 35761192 35761321 -82101306 + AluJb SINE Alu 2 132 -180 21 0 0 0 chr9 35761349 35761370 -82101257 + AT_rich Low_complexity Low_complexity 1 21 0 607 134 104 75 chr9 35761551 35761685 -82100942 - FLAM_C SINE Alu -4 139 2 1626 178 15 0 chr9 35762477 35762747 -82099880 - AluJo SINE Alu -17 295 22 203 327 0 18 chr9 35763129 35763184 -82099443 + MIR SINE MIR 19 72 -136 325 298 10 10 chr9 35763383 35763487 -82099140 + MIR3 SINE MIR 3 106 -102 637 151 0 59 chr9 35763830 35763949 -82098678 - AluJ SINE Alu -12 300 189 803 148 111 0 chr9 35763950 35764085 -82098542 - AluJ SINE Alu -162 150 1 226 145 14 14 chr9 35765214 35765283 -82097344 + (TA)n Simple_repeat Simple_repeat 1 69 0 68 0 0 0 chr9 35765283 35765351 -82097276 + AT_rich Low_complexity Low_complexity 1 68 0 465 102 66 6 chr9 35765351 35765518 -82097109 + (TA)n Simple_repeat Simple_repeat 1 177 0 2127 136 7 0 chr9 35765518 35765813 -82096814 - AluSx SINE Alu -15 297 1 2235 110 0 3 chr9 35766694 35766995 -82095632 + AluSg SINE Alu 1 300 -10 1139 143 29 43 chr9 35767213 35767423 -82095204 - AluJb SINE Alu -21 291 85 2227 107 0 23 chr9 35768305 35768477 -82094150 - AluSg SINE Alu -8 302 139 2452 69 7 3 chr9 35768477 35768780 -82093847 - AluSp SINE Alu -9 304 1 2227 107 0 23 chr9 35768780 35768916 -82093711 - AluSg SINE Alu -171 139 1 2002 112 0 53 chr9 35769582 35769885 -82092742 - AluSx SINE Alu -25 287 1 352 266 52 39 chr9 35769888 35769951 -82092676 - L1ME LINE L1 -459 5662 5601 2194 124 0 3 chr9 35769951 35770250 -82092377 + AluSx SINE Alu 1 298 -14 352 266 52 39 chr9 35770250 35770340 -82092287 - L1ME LINE L1 -520 5601 5507 2542 58 0 0 chr9 35771388 35771680 -82090947 + AluY SINE Alu 2 293 -18 1436 163 17 57 chr9 35771680 35771980 -82090647 - AluJo SINE Alu -23 289 2 1233 189 42 77 chr9 35771985 35772143 -82090484 - AluJo SINE Alu -10 302 140 2487 57 0 7 chr9 35772143 35772443 -82090184 - AluY SINE Alu -13 298 1 1233 189 42 77 chr9 35772443 35772488 -82090139 - AluJo SINE Alu -172 140 95 2187 114 3 10 chr9 35772488 35772794 -82089833 + AluSx SINE Alu 1 304 -8 1233 189 42 77 chr9 35772794 35772902 -82089725 - AluJo SINE Alu -217 95 1 2069 116 3 3 chr9 35772949 35773234 -82089393 - AluSq SINE Alu -28 285 1 1699 174 0 41 chr9 35773286 35773428 -82089199 + AluJb SINE Alu 1 147 -165 2329 110 7 0 chr9 35773428 35773736 -82088891 + AluSx SINE Alu 1 310 -2 1699 174 0 41 chr9 35773736 35773909 -82088718 + AluJb SINE Alu 147 303 -9 2674 54 0 6 chr9 35773963 35774276 -82088351 + AluY SINE Alu 1 311 0 2603 54 0 22 chr9 35774286 35774603 -82088024 + AluY SINE Alu 1 310 -1 2583 54 0 0 chr9 35774609 35774903 -82087724 + AluY SINE Alu 1 294 -17 819 150 0 0 chr9 35774990 35775110 -82087517 + FLAM_C SINE Alu 1 120 -23 602 272 114 33 chr9 35775114 35775474 -82087153 + L1ME4a LINE L1 5513 5901 -220 2528 57 0 7 chr9 35775551 35775850 -82086777 + AluSp SINE Alu 1 297 -16 2223 98 3 0 chr9 35775946 35776233 -82086394 + AluSg SINE Alu 7 294 -16 551 130 94 94 chr9 35776382 35776520 -82086107 + MLT1B LTR MaLR 4 141 -249 2153 123 3 0 chr9 35776538 35776838 -82085789 - AluSx SINE Alu -11 301 1 21 0 0 0 chr9 35776838 35776859 -82085768 + AT_rich Low_complexity Low_complexity 1 21 0 1874 99 0 8 chr9 35776864 35777106 -82085521 - AluSc SINE Alu -69 240 1 916 120 8 0 chr9 35777112 35777237 -82085390 - FLAM_C SINE Alu -17 126 1 607 155 0 78 chr9 35777273 35777402 -82085225 + MER2 DNA MER2_type 2 120 -225 2082 140 0 6 chr9 35777404 35777718 -82084909 - AluSx SINE Alu 0 312 1 367 313 0 52 chr9 35777804 35777863 -82084764 + L2 LINE L2 3141 3202 -70 800 192 0 0 chr9 35777863 35777993 -82084634 - FLAM_C SINE Alu -3 130 1 367 313 0 52 chr9 35777993 35778067 -82084560 + L2 LINE L2 3202 3267 -5 586 153 31 0 chr9 35778384 35778482 -82084145 + AluJb SINE Alu 54 154 -158 2203 64 39 4 chr9 35778933 35779213 -82083414 - AluY SINE Alu -21 290 1 723 104 59 82 chr9 35779465 35779533 -82083094 + AluJo/FLAM SINE Alu 1 66 -236 2339 100 0 0 chr9 35779533 35779832 -82082795 - AluSc SINE Alu -10 299 1 723 104 59 82 chr9 35779832 35779898 -82082729 + AluJo/FLAM SINE Alu 66 132 -170 180 213 21 0 chr9 35780049 35780096 -82082531 - MIR SINE MIR -111 151 104 2482 82 3 0 chr9 35780429 35780732 -82081895 + AluSg SINE Alu 1 304 -6 2334 82 0 10 chr9 35780735 35781041 -82081586 + AluY SINE Alu 1 303 -8 2116 125 6 10 chr9 35781260 35781573 -82081054 + AluSx SINE Alu 1 312 0 950 164 14 0 chr9 35781672 35781818 -82080809 + AluSq/x SINE Alu 2 149 -163 1373 195 84 3 chr9 35781851 35781956 -82080671 + AluJb SINE Alu 3 98 -214 180 0 0 0 chr9 35781956 35781976 -82080651 + (TA)n Simple_repeat Simple_repeat 1 20 0 1373 195 84 3 chr9 35781976 35782157 -82080470 + AluJb SINE Alu 98 312 0 415 202 95 0 chr9 35782179 35782263 -82080364 + MER63 DNA MER1_type 655 746 -315 1932 148 3 0 chr9 35782270 35782587 -82080040 + AluSx SINE Alu 1 318 0 517 200 27 0 chr9 35782673 35782783 -82079844 + MIR SINE MIR 94 206 -56 436 266 8 24 chr9 35782831 35782955 -82079672 + MIR3 SINE MIR 66 187 -21 1943 92 75 58 chr9 35783120 35783413 -82079214 + AluSx SINE Alu 1 298 -14 2312 102 7 7 chr9 35783435 35783738 -82078889 + AluSx SINE Alu 1 303 -9 371 254 73 0 chr9 35784367 35784520 -82078107 - MIR3 SINE MIR -6 202 40 229 185 259 0 chr9 35784538 35784592 -82078035 - LTR33 LTR ERVL -2 519 452 2243 97 10 0 chr9 35784771 35785060 -82077567 - AluSx SINE Alu -20 292 1 291 263 256 8 chr9 35785069 35785202 -82077425 - LTR33 LTR ERVL -343 178 13 261 0 0 0 chr9 35785222 35785251 -82077376 + (TTA)n Simple_repeat Simple_repeat 2 30 0 500 130 0 50 chr9 35785277 35785377 -82077250 + AluJ/FRAM SINE Alu 217 311 -1 184 363 33 11 chr9 35786390 35786481 -82076146 - MIR SINE MIR -150 112 20 1507 194 21 21 chr9 35786520 35786809 -82075818 - AluJo SINE Alu -19 293 5 1299 157 4 22 chr9 35787034 35787263 -82075364 + AluJb SINE Alu 75 299 -13 180 304 0 0 chr9 35787534 35787580 -82075047 - L2 LINE L2 -223 3049 3004 2490 59 3 34 chr9 35787683 35788003 -82074624 - AluY SINE Alu 0 311 2 1698 178 31 0 chr9 35788137 35788429 -82074198 + AluJb SINE Alu 1 301 -11 598 109 36 0 chr9 35788528 35788665 -82073962 + (TA)n Simple_repeat Simple_repeat 2 143 0 1334 202 23 23 chr9 35788747 35789004 -82073623 - AluJb SINE Alu -55 257 1 243 239 0 0 chr9 35789032 35789078 -82073549 + Alu SINE Alu 57 102 -200 270 138 0 0 chr9 35789086 35789144 -82073483 + (GGAA)n Simple_repeat Simple_repeat 3 60 0 283 276 58 45 chr9 35789272 35789337 -82073290 - L1ME LINE L1 -457 5664 5601 2065 137 0 7 chr9 35789337 35789637 -82072990 + AluSx SINE Alu 1 298 -14 283 276 58 45 chr9 35789637 35789727 -82072900 - L1ME LINE L1 -520 5601 5507 2515 60 3 0 chr9 35790775 35791075 -82071552 + AluY SINE Alu 2 302 -9 483 130 0 0 chr9 35791343 35791412 -82071215 - AluJ/FLAM SINE Alu -243 69 1 522 299 68 40 chr9 35791962 35792287 -82070340 - L2 LINE L2 -2 3311 2978 1508 167 26 49 chr9 35792649 35792831 -82069796 - AluJb SINE Alu -13 299 125 2001 149 0 13 chr9 35792831 35793146 -82069481 - AluSx SINE Alu -1 311 1 1508 167 26 49 chr9 35793146 35793269 -82069358 - AluJb SINE Alu -187 125 1 503 164 8 90 chr9 35793780 35793902 -82068725 - Tigger1 DNA MER2_type -143 2275 2164 536 163 22 0 chr9 35793904 35793996 -82068631 - L1MA4A LINE L1 -153 6150 6057 1378 168 0 9 chr9 35793997 35794229 -82068398 + AluSg/x SINE Alu 76 305 -5 1832 148 4 0 chr9 35794258 35794535 -82068092 - AluJb SINE Alu -34 278 1 2752 159 25 50 chr9 35794535 35794899 -82067728 - L1MA4A LINE L1 -230 6073 5728 1099 126 0 16 chr9 35794899 35795080 -82067547 + L1MA4A LINE L1 6124 6302 -1 2752 159 25 50 chr9 35795080 35795313 -82067314 - L1MA4A LINE L1 -575 5728 5491 588 200 0 0 chr9 35795332 35795427 -82067200 - FRAM SINE Alu -62 114 20 1095 133 45 27 chr9 35795427 35795581 -82067046 - L1MA4A LINE L1 -746 5400 5331 1623 157 6 61 chr9 35795581 35795894 -82066733 - AluJo SINE Alu -16 296 1 1095 133 45 27 chr9 35795894 35796008 -82066619 - L1MA4A LINE L1 -815 5331 5221 1901 147 28 0 chr9 35796071 35796356 -82066271 + AluSx SINE Alu 1 293 -19 2170 111 13 7 chr9 35797097 35797404 -82065223 + AluSg SINE Alu 1 309 -1 713 137 0 14 chr9 35798393 35798539 -82064088 + (TTCC)n Simple_repeat Simple_repeat 3 146 0 243 239 0 0 chr9 35798547 35798593 -82064034 - Alu SINE Alu -200 102 57 1361 220 8 0 chr9 35798621 35798876 -82063751 + AluJb SINE Alu 1 257 -55 488 137 46 0 chr9 35798958 35799111 -82063516 + (TA)n Simple_repeat Simple_repeat 2 161 0 325 239 11 33 chr9 35799118 35799210 -82063417 + L1MC4 LINE L1 6614 6703 -1339 1698 178 31 0 chr9 35799309 35799601 -82063026 - AluJb SINE Alu -11 301 1 2569 48 3 19 chr9 35799735 35800050 -82062577 + AluY SINE Alu 2 311 0 1433 91 0 25 chr9 35800182 35800381 -82062246 - AluSg/x SINE Alu -18 294 101 2129 79 50 4 chr9 35800392 35800670 -82061957 - AluSc SINE Alu -18 291 1 1573 97 5 5 chr9 35800675 35800891 -82061736 - AluSp SINE Alu -11 302 87 1424 213 11 11 chr9 35801021 35801307 -82061320 - AluJo SINE Alu -18 294 9 2107 107 0 28 chr9 35801467 35801780 -82060847 - AluY SINE Alu 0 305 1 746 143 0 45 chr9 35801885 35802018 -82060609 - FLAM_C SINE Alu -5 128 2 922 145 0 14 chr9 35802234 35802379 -82060248 - AluSg/x SINE Alu -10 302 160 1503 138 5 13 chr9 35802379 35802603 -82060024 + AluSc SINE Alu 72 293 -16 25 0 0 0 chr9 35802904 35802929 -82059698 + AT_rich Low_complexity Low_complexity 1 25 0 2185 84 0 0 chr9 35802933 35803206 -82059421 + AluSg SINE Alu 1 273 -37 482 190 13 26 chr9 35803314 35803546 -82059081 + GA-rich Low_complexity Low_complexity 1 229 0 1550 184 7 30 chr9 35803933 35804232 -82058395 + AluJb SINE Alu 1 292 -20 507 143 114 32 chr9 35804251 35804417 -82058210 + Tigger1 DNA MER2_type 2182 2418 0 2241 109 0 0 chr9 35805470 35805772 -82056855 + AluSc SINE Alu 1 302 -7 1935 158 10 7 chr9 35805885 35806195 -82056432 + AluJb SINE Alu 1 311 -1 2256 185 109 4 chr9 35806250 35806775 -82055852 + L1MB7 LINE L1 5502 6081 -103 870 130 0 23 chr9 35807223 35807354 -82055273 + AluJo SINE Alu 1 128 -174 917 171 0 50 chr9 35808412 35808593 -82054034 + AluJo SINE Alu 129 300 -12 2170 90 20 7 chr9 35808655 35808955 -82053672 + AluY SINE Alu 1 304 -7 189 0 0 0 chr9 35809094 35809115 -82053512 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 576 336 32 7 chr9 35809177 35809454 -82053173 - L1MC4a LINE L1 -1961 5847 5564 241 138 0 138 chr9 35809959 35810024 -82052603 - MER58 DNA MER1_type 0 2420 2365 603 128 59 0 chr9 35810025 35810127 -82052500 - FLAM_C SINE Alu -35 108 1 1327 183 27 84 chr9 35810296 35810630 -82051997 + MER68 LTR ERV1 1 315 -247 1721 171 3 13 chr9 35810978 35811282 -82051345 + AluJb SINE Alu 1 301 -11 578 263 8 8 chr9 35811304 35811437 -82051190 + FLAM_C SINE Alu 1 133 0 2171 86 0 56 chr9 35812306 35812652 -82049975 + AluY SINE Alu 1 311 0 2114 99 3 3 chr9 35812859 35813141 -82049486 + AluSx SINE Alu 1 282 -30 2408 58 13 26 chr9 35813497 35813809 -82048818 - AluY SINE Alu -3 308 1 230 233 0 0 chr9 35814327 35814370 -82048257 + (CA)n Simple_repeat Simple_repeat 2 44 0 1041 146 131 88 chr9 35814482 35814756 -82047871 - AluJo SINE Alu -16 286 1 2422 97 6 0 chr9 35814774 35815085 -82047542 - AluSq SINE Alu 0 313 1 1735 156 30 27 chr9 35816306 35816607 -82046020 - AluJo SINE Alu -10 302 1 2131 135 0 0 chr9 35817348 35817645 -82044982 - AluSx SINE Alu -15 297 1 288 0 0 0 chr9 35817708 35817740 -82044887 + (CA)n Simple_repeat Simple_repeat 2 33 0 2452 75 0 3 chr9 35818677 35818984 -82043643 + AluSg SINE Alu 1 306 -4 2303 92 10 3 chr9 35818985 35819290 -82043337 + AluSp SINE Alu 1 307 -6 1857 158 0 32 chr9 35819756 35820067 -82042560 - AluSx SINE Alu -11 301 1 1390 180 107 0 chr9 35820274 35820546 -82042081 + AluJo SINE Alu 1 301 -11 26 0 0 0 chr9 35820664 35820690 -82041937 + AT_rich Low_complexity Low_complexity 1 26 0 668 271 18 41 chr9 35820701 35821011 -82041616 - L1ME1 LINE L1 -24 6140 5838 1572 188 3 29 chr9 35821392 35821700 -82040927 - AluJb SINE Alu -12 300 1 2092 121 14 0 chr9 35821856 35822145 -82040482 - AluSq SINE Alu -20 293 1 21 0 0 0 chr9 35822145 35822166 -82040461 + AT_rich Low_complexity Low_complexity 1 21 0 627 196 8 53 chr9 35822172 35822305 -82040322 + FLAM_A SINE Alu 1 127 -6 2087 110 7 20 chr9 35822305 35822604 -82040023 + AluSx SINE Alu 1 295 -17 1310 196 58 31 chr9 35823377 35823668 -82038959 - AluJo SINE Alu -13 299 1 2140 128 3 16 chr9 35823932 35824238 -82038389 + AluSq SINE Alu 1 302 -11 22 56 0 0 chr9 35825648 35825684 -82036943 + AT_rich Low_complexity Low_complexity 1 36 0 2235 93 7 0 chr9 35825804 35826132 -82036495 + AluSg SINE Alu 1 330 0 2133 122 0 7 chr9 35826133 35826436 -82036191 + AluSq SINE Alu 1 301 -12 21 0 0 0 chr9 35826436 35826457 -82036170 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr9 35827129 35827154 -82035473 + AT_rich Low_complexity Low_complexity 1 25 0 1057 185 0 6 chr9 35827992 35828165 -82034462 + FAM SINE Alu 1 172 -3 748 249 131 19 chr9 35828191 35828569 -82034058 - L1ME1 LINE L1 -622 5544 5272 585 160 28 9 chr9 35828587 35828693 -82033934 - L1MB4 LINE L1 -25 6155 6048 891 242 82 40 chr9 35828715 35829205 -82033422 - L1M4 LINE L1 -817 5329 4861 2215 94 0 7 chr9 35829205 35829502 -82033125 + AluY SINE Alu 1 295 -16 891 242 82 40 chr9 35829502 35829604 -82033023 - L1M4 LINE L1 -1285 4861 4765 1947 146 9 35 chr9 35829604 35829920 -82032707 + AluSx SINE Alu 1 308 -4 891 242 82 40 chr9 35829920 35830228 -82032399 - L1M4 LINE L1 -1381 4765 4317 992 259 163 14 chr9 35830441 35830931 -82031696 - L1ME1 LINE L1 -1616 4530 3968 290 136 198 12 chr9 35832018 35832099 -82030528 - L1ME1 LINE L1 -2190 3956 3861 2041 181 43 89 chr9 35832124 35832683 -82029944 - L1MB7 LINE L1 -25 6159 5627 1258 223 39 29 chr9 35832711 35833020 -82029607 + AluJo SINE Alu 1 312 0 1890 130 25 7 chr9 35833027 35833303 -82029324 + AluSx SINE Alu 5 285 -27 1599 151 4 20 chr9 35833357 35833609 -82029018 - AluJb SINE Alu -1 311 64 252 326 39 6 chr9 35833614 35833795 -82028832 - L1ME1 LINE L1 -2798 3348 3162 1528 188 14 14 chr9 35833876 35834169 -82028458 - AluJb SINE Alu -19 293 1 2379 88 3 3 chr9 35834234 35834541 -82028086 - AluSx SINE Alu -5 307 1 553 247 45 39 chr9 35836261 35836439 -82026188 + MER20 DNA MER1_type 41 219 0 1516 183 23 109 chr9 35837196 35837363 -82025264 + L1MB8 LINE L1 5004 5184 -999 1354 189 60 0 chr9 35837363 35837644 -82024983 + AluJo SINE Alu 1 298 -14 1516 183 23 109 chr9 35837644 35837664 -82024963 + L1MB8 LINE L1 5184 5204 -979 1717 198 3 0 chr9 35837664 35837962 -82024665 + AluJb SINE Alu 1 299 -13 1516 183 23 109 chr9 35837962 35838108 -82024519 + L1MB8 LINE L1 5204 5361 -822 1706 133 78 0 chr9 35838108 35838378 -82024249 + AluSx SINE Alu 1 291 -21 1516 183 23 109 chr9 35838378 35838588 -82024039 + L1MB8 LINE L1 5361 5587 -596 2354 92 0 7 chr9 35838588 35838894 -82023733 + AluSg SINE Alu 1 304 -6 1516 183 23 109 chr9 35838894 35838955 -82023672 + L1MB8 LINE L1 5587 5552 -631 2311 74 13 26 chr9 35838955 35839264 -82023363 + AluY SINE Alu 1 305 -6 1516 183 23 109 chr9 35839264 35839354 -82023273 + L1MB8 LINE L1 5551 5647 -536 871 135 0 0 chr9 35839372 35839498 -82023129 + FLAM_C SINE Alu 1 126 -17 574 174 9 0 chr9 35839694 35839809 -82022818 + L1MB8 LINE L1 5760 5875 -309 1364 142 51 34 chr9 35839833 35840129 -82022498 + L1MB8 LINE L1 5853 6153 -25 1965 132 0 48 chr9 35840153 35840464 -82022163 + AluSx SINE Alu 1 296 -16 578 118 59 0 chr9 35840664 35840749 -82021878 - 5S rRNA rRNA -31 90 1 1330 154 39 0 chr9 35840829 35841037 -82021590 + AluJb SINE Alu 87 302 -10 470 281 118 67 chr9 35841254 35841552 -82021075 - L1M4 LINE L1 -1141 5005 4667 2179 113 23 3 chr9 35841552 35841852 -82020775 - AluSq SINE Alu -7 306 1 470 281 118 67 chr9 35841852 35842076 -82020551 - L1M4 LINE L1 -1479 4667 4456 576 160 0 20 chr9 35842154 35842254 -82020373 - FLAM_A SINE Alu 0 142 45 286 290 48 38 chr9 35842578 35842764 -82019863 - L1M4 LINE L1 -2244 3902 3715 1125 117 0 19 chr9 35842867 35843002 -82019625 + AluSq SINE Alu 1 134 -179 2542 53 0 3 chr9 35843002 35843301 -82019326 + AluY SINE Alu 1 298 -13 1125 117 0 19 chr9 35843301 35843327 -82019300 + AluSq SINE Alu 134 159 -154 563 129 0 103 chr9 35843429 35843545 -82019082 + AluSq SINE Alu 138 241 -72 2171 99 0 20 chr9 35843578 35843872 -82018755 - AluSx SINE Alu -24 288 1 2110 134 0 3 chr9 35845068 35845366 -82017261 + AluSx SINE Alu 1 297 -15 229 272 136 12 chr9 35845780 35845861 -82016766 - MIR3 SINE MIR -2 206 116 213 321 22 15 chr9 35846319 35846453 -82016174 + CT-rich Low_complexity Low_complexity 3 137 0 37 23 0 0 chr9 35846857 35846901 -82015726 + AT_rich Low_complexity Low_complexity 1 44 0 821 197 0 0 chr9 35846902 35847024 -82015603 + FLAM_C SINE Alu 2 123 -20 306 0 0 0 chr9 35847024 35847058 -82015569 + (CA)n Simple_repeat Simple_repeat 2 35 0 27 62 0 0 chr9 35847064 35847112 -82015515 + AT_rich Low_complexity Low_complexity 1 48 0 9061 176 36 9 chr9 35847265 35847853 -82014774 + L1P5 LINE L1 3414 3984 -2167 2298 95 0 16 chr9 35847853 35848159 -82014468 + AluSx SINE Alu 1 301 -11 9061 176 36 9 chr9 35848159 35849897 -82012730 + L1P5 LINE L1 3984 5791 -360 245 125 0 21 chr9 35849919 35849967 -82012660 + (TA)n Simple_repeat Simple_repeat 2 48 0 581 311 56 6 chr9 35850546 35850726 -82011901 + MER91A DNA MER1_type 8 196 0 330 267 130 27 chr9 35850751 35850897 -82011730 + L2 LINE L2 3108 3268 -4 2243 105 20 7 chr9 35851081 35851377 -82011250 - AluSx SINE Alu -12 300 1 2346 93 7 0 chr9 35851408 35851710 -82010917 - AluY SINE Alu -7 304 1 489 260 110 58 chr9 35851741 35851968 -82010659 + LTR33A LTR ERVL 21 268 -255 1943 90 27 111 chr9 35851968 35852301 -82010326 - AluSx SINE Alu -7 305 1 489 260 110 58 chr9 35852301 35852365 -82010262 + LTR33A LTR ERVL 268 327 -196 308 287 23 0 chr9 35852420 35852507 -82010120 - L1MC4 LINE L1 -1339 6703 6615 237 185 92 0 chr9 35852523 35852588 -82010039 - L1MC4 LINE L1 -1875 5933 5863 406 260 0 0 chr9 35852592 35852680 -82009947 - L1MC4 LINE L1 -530 5591 5513 879 154 15 0 chr9 35852681 35852811 -82009816 + FLAM_C SINE Alu 2 133 0 1831 110 8 4 chr9 35852843 35853098 -82009529 - AluSx SINE Alu -11 301 46 869 175 65 92 chr9 35853199 35853324 -82009303 - AluJb SINE Alu -100 212 85 1548 172 0 55 chr9 35853324 35853460 -82009167 + AluJo SINE Alu 1 143 -169 1899 162 0 13 chr9 35853460 35853763 -82008864 + AluJb SINE Alu 1 299 -13 1855 168 3 3 chr9 35853768 35854077 -82008550 + AluSx SINE Alu 1 309 -3 207 0 0 0 chr9 35854080 35854103 -82008524 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 1548 172 0 55 chr9 35854103 35854247 -82008380 + AluJo SINE Alu 149 275 -37 869 175 65 92 chr9 35854247 35854338 -82008289 - AluJb SINE Alu -227 85 2 558 281 100 20 chr9 35854338 35854423 -82008204 - L1MC4 LINE L1 -667 5499 5422 2292 101 0 3 chr9 35854423 35854719 -82007908 + AluSg SINE Alu 1 295 -15 558 281 100 20 chr9 35854719 35855071 -82007556 - L1MC4 LINE L1 -744 5422 5026 2337 97 3 0 chr9 35855654 35855963 -82006664 - AluY SINE Alu -1 310 1 212 224 20 0 chr9 35856058 35856107 -82006520 + L2 LINE L2 3264 3313 0 2351 97 3 10 chr9 35856460 35856771 -82005856 - AluSp SINE Alu -4 309 1 2076 130 3 0 chr9 35856771 35857064 -82005563 - AluSx SINE Alu -16 296 3 2073 103 30 17 chr9 35857066 35857366 -82005261 - AluSx SINE Alu -8 304 1 1081 188 0 0 chr9 35857369 35857545 -82005082 - AluJ SINE Alu -8 304 129 962 189 17 6 chr9 35857587 35857762 -82004865 - AluJb SINE Alu -135 177 1 207 0 0 0 chr9 35857762 35857785 -82004842 + (TTTTA)n Simple_repeat Simple_repeat 4 26 0 1122 188 16 5 chr9 35857787 35857979 -82004648 - AluJb SINE Alu -32 280 87 432 120 40 53 chr9 35857982 35858057 -82004570 - AluJ SINE Alu -175 137 64 1610 129 40 63 chr9 35858121 35858424 -82004203 + AluJb SINE Alu 1 296 -16 233 234 0 0 chr9 35858499 35858546 -82004081 - L3b LINE CR1 0 1583 1537 948 148 12 0 chr9 35858546 35858708 -82003919 - AluJb SINE Alu -12 300 137 211 308 64 0 chr9 35858709 35858787 -82003840 - MIR3 SINE MIR -40 168 86 432 109 0 16 chr9 35859499 35859563 -82003064 + Alu SINE Alu 2 64 -254 1853 108 0 0 chr9 35859577 35859818 -82002809 + AluSx SINE Alu 35 275 -37 237 65 0 0 chr9 35859821 35859852 -82002775 + (CAA)n Simple_repeat Simple_repeat 3 33 0 2655 181 52 24 chr9 35859868 35860409 -82002218 - MER21A LTR ERV1 0 931 376 1075 170 55 85 chr9 35860415 35860455 -82002172 - MER21A LTR ERV1 -668 263 223 1668 120 132 0 chr9 35860455 35860713 -82001914 - AluSx SINE Alu -20 292 1 1075 170 55 85 chr9 35860713 35860906 -82001721 - MER21A LTR ERV1 -708 223 37 486 0 0 0 chr9 35860906 35860960 -82001667 + (TG)n Simple_repeat Simple_repeat 2 55 0 1075 170 55 85 chr9 35860960 35860996 -82001631 - MER21A LTR ERV1 -894 37 1 913 201 148 27 chr9 35861010 35861383 -82001244 - L1MC5 LINE L1 -136 7825 7408 968 176 0 18 chr9 35861429 35861599 -82001028 + AluJo SINE Alu 122 288 -24 438 262 98 0 chr9 35861714 35861836 -82000791 - L2 LINE L2 -3 3269 3136 1521 152 152 8 chr9 35862326 35862590 -82000037 + AluSx SINE Alu 1 302 0 661 102 22 22 chr9 35863143 35863280 -81999347 + (TCCCC)n Simple_repeat Simple_repeat 4 140 0 1394 152 25 118 chr9 35863282 35863460 -81999167 - AluJo SINE Alu -24 288 150 1822 135 43 3 chr9 35863460 35863742 -81998885 - AluJb SINE Alu -19 293 1 1394 152 25 118 chr9 35863742 35863878 -81998749 - AluJo SINE Alu -162 150 3 2527 47 7 3 chr9 35864365 35864662 -81997965 + AluY SINE Alu 1 298 -13 963 159 46 0 chr9 35865100 35865251 -81997376 + FRAM SINE Alu 1 158 -8 1720 158 13 23 chr9 35865627 35865930 -81996697 + AluJb SINE Alu 1 300 -12 2141 86 79 0 chr9 35866266 35866546 -81996081 + AluSp SINE Alu 1 302 -11 207 0 0 0 chr9 35866565 35866588 -81996039 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 235 271 0 0 chr9 35866777 35866836 -81995791 - L1MC4 LINE L1 -1336 6706 6648 26 30 0 0 chr9 35867233 35867266 -81995361 + AT_rich Low_complexity Low_complexity 1 33 0 1239 188 73 8 chr9 35867269 35867530 -81995097 - L1MB5 LINE L1 -8 6166 5889 824 148 99 25 chr9 35867530 35867692 -81994935 - AluJo/FRAM SINE Alu -5 307 134 1553 145 25 0 chr9 35867692 35867934 -81994693 - AluJb SINE Alu -2 310 63 963 125 10 95 chr9 35867936 35868136 -81994491 - L1MA6 LINE L1 -171 6129 5947 2034 125 18 0 chr9 35868304 35868585 -81994042 - AluSx SINE Alu -26 286 1 340 66 49 0 chr9 35868617 35868678 -81993949 - L1PA16 LINE L1 0 6166 6103 812 177 14 0 chr9 35868692 35868833 -81993794 - L1MA6 LINE L1 -338 5962 5820 856 102 0 16 chr9 35868833 35868961 -81993666 - AluSg/x SINE Alu 0 310 185 1684 92 0 9 chr9 35869020 35869247 -81993380 + AluSc SINE Alu 1 225 -84 1841 146 77 5 chr9 35869355 35869748 -81992879 - L1MB5 LINE L1 -731 5602 5188 2227 123 3 3 chr9 35869751 35870061 -81992566 - AluSx SINE Alu -2 310 1 2356 106 0 0 chr9 35870433 35870736 -81991891 - AluSg SINE Alu -7 303 1 2086 121 0 4 chr9 35870736 35871017 -81991610 - AluSc SINE Alu -29 280 1 1165 52 7 0 chr9 35871018 35871154 -81991473 - AluSq/x SINE Alu -175 137 1 2222 95 0 7 chr9 35871260 35871544 -81991083 - AluSg SINE Alu -28 282 1 595 173 0 2 chr9 35872078 35872288 -81990339 + AluJ SINE Alu 3 263 -49 441 0 0 0 chr9 35872308 35872357 -81990270 + (TG)n Simple_repeat Simple_repeat 2 50 0 1945 98 66 7 chr9 35872403 35872689 -81989938 - AluSq SINE Alu -10 303 1 2272 77 44 0 chr9 35872813 35873111 -81989516 - AluY SINE Alu 0 311 1 1599 143 0 0 chr9 35873244 35873475 -81989152 - AluSx SINE Alu -81 231 1 1719 98 0 0 chr9 35874394 35874618 -81988009 - AluSg/x SINE Alu -4 308 85 870 295 137 8 chr9 35874699 35875184 -81987443 - L2 LINE L2 -2 3311 2761 3562 137 86 16 chr9 35875623 35875679 -81986948 + Tigger3b DNA MER2_type 21 72 -2956 823 157 0 15 chr9 35875679 35875813 -81986814 + FLAM_C SINE Alu 1 132 -1 3562 137 86 16 chr9 35875813 35876442 -81986185 + Tigger3b DNA MER2_type 72 754 -477 255 189 0 0 chr9 35876478 35876531 -81986096 + (TG)n Simple_repeat Simple_repeat 2 54 0 263 219 0 0 chr9 35877040 35877104 -81985523 + L1MC4 LINE L1 6640 6703 -1339 243 240 0 62 chr9 35877088 35877184 -81985443 - L1MC4 LINE L1 -1339 6703 6614 * 246 161 18 36 chr9 35877184 35877240 -81985387 + (CATATA)n Simple_repeat Simple_repeat 6 60 0 24 53 0 0 chr9 35877683 35877721 -81984906 + AT_rich Low_complexity Low_complexity 1 38 0 2254 94 3 3 chr9 35878101 35878389 -81984238 - AluSx SINE Alu -18 294 7 804 201 43 42 chr9 35878427 35878832 -81983795 + MLT1H1 LTR MaLR 10 555 0 25 0 0 0 chr9 35878838 35878863 -81983764 + AT_rich Low_complexity Low_complexity 1 25 0 246 32 0 0 chr9 35878877 35878908 -81983719 + (TTA)n Simple_repeat Simple_repeat 1 31 0 480 224 0 0 chr9 35878921 35879006 -81983621 - FLAM_A SINE Alu -56 86 2 664 188 8 0 chr9 35879016 35879133 -81983494 - L1MC1 LINE L1 0 6333 6216 1975 146 0 25 chr9 35879136 35879452 -81983175 - AluJo SINE Alu -4 308 1 2228 104 6 19 chr9 35879546 35879862 -81982765 - AluSx SINE Alu 0 312 1 734 215 126 60 chr9 35880019 35880321 -81982306 + L1MC4a LINE L1 5583 5904 -1904 35 41 0 0 chr9 35880591 35880640 -81981987 + AT_rich Low_complexity Low_complexity 1 49 0 2103 127 0 20 chr9 35881143 35881442 -81981185 + AluSx SINE Alu 1 293 -19 2009 113 35 3 chr9 35881466 35881750 -81980877 + AluSc SINE Alu 1 293 -16 193 278 19 0 chr9 35882043 35882097 -81980530 - L2 LINE L2 -8 3264 3210 2188 82 7 43 chr9 35882188 35882331 -81980296 + AluSg SINE Alu 1 129 -181 2329 101 0 10 chr9 35882331 35882639 -81979988 + AluSq SINE Alu 1 305 -8 2188 82 7 43 chr9 35882639 35882800 -81979827 + AluSg SINE Alu 129 294 -16 2278 184 30 11 chr9 35882851 35883364 -81979263 + Tigger7 DNA MER2_type 1 2490 -1 293 102 0 0 chr9 35883562 35883611 -81979016 + FLAM_A SINE Alu 85 126 -7 231 167 0 0 chr9 35883720 35883762 -81978865 + (CAGCC)n Simple_repeat Simple_repeat 5 46 0 216 97 0 0 chr9 35885731 35885762 -81976865 + (A)n Simple_repeat Simple_repeat 1 31 0 2376 102 0 0 chr9 35885774 35886087 -81976540 + AluSq SINE Alu 1 313 0 230 279 29 31 chr9 35886668 35886819 -81975808 + MIR3 SINE MIR 4 150 -66 2176 133 3 0 chr9 35886997 35887305 -81975322 - AluJo SINE Alu -3 309 1 528 283 80 22 chr9 35887434 35887660 -81974967 + Charlie8 DNA MER1_type 44 282 -2135 303 181 0 42 chr9 35887695 35887767 -81974860 - L1MB8 LINE L1 -142 6036 5968 827 138 41 0 chr9 35887776 35887899 -81974728 - FLAM_C SINE Alu -5 128 1 1827 161 3 16 chr9 35887971 35888275 -81974352 + AluJb SINE Alu 1 300 -12 253 209 23 58 chr9 35889231 35889317 -81973310 - MIR SINE MIR -76 186 104 434 340 43 39 chr9 35889652 35890135 -81972492 + L2 LINE L2 2337 2821 -493 25 0 0 0 chr9 35890361 35890386 -81972241 + AT_rich Low_complexity Low_complexity 1 25 0 204 319 12 102 chr9 35890387 35890457 -81972170 + L2 LINE L2 3118 3193 -79 1943 152 0 23 chr9 35890457 35890759 -81971868 + AluJo SINE Alu 3 297 -15 204 319 12 102 chr9 35890759 35890810 -81971817 + L2 LINE L2 3193 3223 -49 2026 137 13 3 chr9 35890810 35891117 -81971510 + AluSx SINE Alu 1 310 -2 204 319 12 102 chr9 35891117 35891160 -81971467 + L2 LINE L2 3223 3268 -4 813 280 113 46 chr9 35891381 35891474 -81971153 - L2 LINE L2 0 3313 3228 1690 161 17 27 chr9 35891474 35891766 -81970861 + AluJo SINE Alu 1 289 -23 813 280 113 46 chr9 35891766 35892368 -81970259 - L2 LINE L2 -85 3228 2584 231 259 141 0 chr9 35892687 35892772 -81969855 - MIR3 SINE MIR -10 198 102 223 237 53 40 chr9 35892919 35892995 -81969632 + MIR SINE MIR 186 262 0 214 308 0 0 chr9 35893099 35893151 -81969476 - MIR3 SINE MIR -48 160 109 516 198 0 0 chr9 35893158 35893264 -81969363 + FRAM SINE Alu 71 176 0 227 216 0 20 chr9 35894046 35894097 -81968530 - L2 LINE L2 -4 3268 3219 2333 49 3 11 chr9 35895521 35895830 -81966797 + AluY SINE Alu 1 307 0 312 285 63 51 chr9 35895916 35896074 -81966553 + MIR SINE MIR 91 250 -12 1812 65 0 55 chr9 35896079 35896388 -81966239 + AluY SINE Alu 1 292 -19 236 232 87 29 chr9 35896761 35896830 -81965797 - MIR SINE MIR -71 191 119 28 29 0 0 chr9 35897085 35897120 -81965507 + AT_rich Low_complexity Low_complexity 1 35 0 406 360 35 27 chr9 35897360 35897621 -81965006 + L2 LINE L2 2526 2788 -526 1632 177 6 61 chr9 35898761 35899089 -81963538 + AluJo SINE Alu 1 310 -2 309 306 68 50 chr9 35899203 35899425 -81963202 + MIR SINE MIR 20 245 -17 1721 273 34 62 chr9 35900208 35900882 -81961745 + MLT2F LTR ERVL 1 655 -8 235 158 123 0 chr9 35900926 35900983 -81961644 - L2 LINE L2 -215 3057 2994 1146 223 24 24 chr9 35901383 35901679 -81960948 + AluJb SINE Alu 3 298 -4 1794 140 15 11 chr9 35901853 35902118 -81960509 - AluSx SINE Alu -46 266 1 2509 78 0 0 chr9 35902489 35902798 -81959829 - AluSc SINE Alu 0 309 1 2039 131 7 0 chr9 35903199 35903496 -81959131 + AluSq SINE Alu 1 299 -14 2431 95 38 7 chr9 35903505 35903870 -81958757 + L1MA1 LINE L1 5731 6119 -183 1991 157 0 0 chr9 35903872 35904159 -81958468 + AluSx SINE Alu 1 287 -25 816 136 15 15 chr9 35904181 35904313 -81958314 + FLAM_C SINE Alu 1 132 -1 2190 110 0 3 chr9 35904319 35904609 -81958018 + AluSc SINE Alu 1 289 -20 255 298 61 35 chr9 35904717 35904831 -81957796 - MIR SINE MIR -140 122 6 2289 106 0 6 chr9 35904881 35905192 -81957435 + AluSg SINE Alu 1 309 -1 347 200 163 22 chr9 35905824 35905959 -81956668 - L1ME4a LINE L1 0 6121 5968 262 240 13 13 chr9 35906068 35906143 -81956484 - MIR SINE MIR -92 116 42 490 288 29 0 chr9 35906614 35906753 -81955874 + MIR SINE MIR 8 150 -112 1006 97 8 0 chr9 35906753 35906887 -81955740 + AluSq/x SINE Alu 1 135 -177 2310 102 3 3 chr9 35906887 35907191 -81955436 + AluSq SINE Alu 1 304 -9 1646 167 59 14 chr9 35907595 35907883 -81954744 + AluJb SINE Alu 1 301 -11 184 304 76 25 chr9 35907997 35908076 -81954551 - MIR3 SINE MIR -45 163 81 2905 13 0 0 chr9 35908763 35909074 -81953553 + AluYa5 SINE Alu 1 311 0 2215 129 0 0 chr9 35909784 35910086 -81952541 - AluSx SINE Alu -10 302 1 354 339 110 8 chr9 35910134 35910370 -81952257 + MIR SINE MIR 3 262 0 254 70 0 47 chr9 35910647 35910690 -81951937 - MER5B DNA MER1_type -16 162 122 3354 131 68 11 chr9 35910692 35911266 -81951361 + L1MB7 LINE L1 5524 6130 -54 969 140 60 0 chr9 35911283 35911433 -81951194 - U2 snRNA snRNA -1 187 29 291 149 0 0 chr9 35911460 35911507 -81951120 - U2 snRNA snRNA -141 47 1 2242 117 0 0 chr9 35911530 35911839 -81950788 + AluSq SINE Alu 1 309 -4 2012 138 0 19 chr9 35911845 35912156 -81950471 + AluJb SINE Alu 1 305 -7 297 194 0 42 chr9 35912196 35912268 -81950359 + L1MB7 LINE L1 6097 6165 -19 264 228 0 18 chr9 35912278 35912335 -81950292 - MER5B DNA MER1_type -49 129 74 1832 241 62 90 chr9 35912351 35912766 -81949861 + L1ME3A LINE L1 5173 5598 -572 1940 137 0 23 chr9 35912766 35913065 -81949562 + AluJb SINE Alu 21 312 0 1832 241 62 90 chr9 35913065 35913655 -81948972 + L1ME3A LINE L1 5598 6168 -2 21 0 0 0 chr9 35913783 35913804 -81948823 + AT_rich Low_complexity Low_complexity 1 21 0 1572 148 82 59 chr9 35914106 35914253 -81948374 + AluJo SINE Alu 1 143 -169 2518 71 0 10 chr9 35914253 35914564 -81948063 + AluY SINE Alu 1 308 -3 1572 148 82 59 chr9 35914564 35914721 -81947906 + AluJo SINE Alu 143 312 0 2305 96 0 0 chr9 35914812 35915123 -81947504 + AluSx SINE Alu 1 312 0 795 302 31 43 chr9 35915686 35916130 -81946497 + MLT1K LTR MaLR 142 580 -8 1090 161 6 17 chr9 35916513 35916687 -81945940 + FAM SINE Alu 4 175 0 1794 171 7 13 chr9 35916964 35917268 -81945359 + AluJo SINE Alu 1 302 -10 414 0 0 0 chr9 35917609 35917655 -81944972 + (CA)n Simple_repeat Simple_repeat 1 46 0 2269 123 7 0 chr9 35919352 35919660 -81942967 - AluSx SINE Alu -2 310 1 588 247 6 62 chr9 35920103 35920281 -81942346 + MIR3 SINE MIR 35 202 -6 2225 88 11 67 chr9 35920574 35920947 -81941680 + MER4A LTR ERV1 1 352 -312 426 103 0 29 chr9 35920987 35921055 -81941572 + MER4A LTR ERV1 356 421 -243 555 151 216 29 chr9 35921162 35921301 -81941326 + MER4C LTR ERV1 301 465 0 2268 62 101 146 chr9 35921859 35921958 -81940669 + L1ME2 LINE L1 5278 5380 -954 2152 122 7 0 chr9 35921958 35922253 -81940374 + AluSx SINE Alu 1 297 -15 2324 70 17 7 chr9 35922253 35922553 -81940074 + AluY SINE Alu 1 303 -8 2268 62 101 146 chr9 35922553 35922726 -81939901 + L1ME2 LINE L1 5379 5558 -776 1589 160 80 21 chr9 35922726 35923013 -81939614 - AluJo SINE Alu -8 304 1 2268 62 101 146 chr9 35923013 35923123 -81939504 + L1ME2 LINE L1 5558 5671 -663 1487 80 45 5 chr9 35923123 35923322 -81939305 + AluSp SINE Alu 90 296 -17 2268 62 101 146 chr9 35923322 35923637 -81938990 + L1ME2 LINE L1 5671 5999 -335 246 154 0 0 chr9 35923637 35923676 -81938951 + MER3 DNA MER1_type 11 49 -160 2268 62 101 146 chr9 35923676 35923801 -81938826 + L1ME2 LINE L1 5999 6334 0 371 97 0 16 chr9 35923876 35923938 -81938689 + (TAGG)n Simple_repeat Simple_repeat 1 61 0 321 26 0 0 chr9 35923952 35923990 -81938637 + (CAGA)n Simple_repeat Simple_repeat 3 40 0 1613 146 7 80 chr9 35923990 35924155 -81938472 - AluJo SINE Alu -32 280 143 1889 167 3 7 chr9 35924155 35924464 -81938163 + AluJb SINE Alu 1 308 0 1613 146 7 80 chr9 35924464 35924598 -81938029 - AluJo SINE Alu -169 143 1 2606 50 0 0 chr9 35924698 35924996 -81937631 + AluY SINE Alu 1 298 -13 2499 42 0 36 chr9 35925005 35925311 -81937316 + AluY SINE Alu 1 295 -16 2396 85 0 0 chr9 35926246 35926539 -81936088 + AluY SINE Alu 6 298 -13 2352 71 10 7 chr9 35927023 35927319 -81935308 + AluSq SINE Alu 1 297 -16 257 169 0 15 chr9 35927839 35927904 -81934723 + (TA)n Simple_repeat Simple_repeat 1 64 0 2164 107 0 4 chr9 35927949 35928229 -81934398 - AluSx SINE Alu -20 292 14 350 132 15 29 chr9 35928261 35928329 -81934298 + Alu SINE Alu 236 302 0 22 35 0 0 chr9 35928521 35928550 -81934077 + AT_rich Low_complexity Low_complexity 1 29 0 366 23 0 0 chr9 35928565 35928608 -81934019 + (TG)n Simple_repeat Simple_repeat 2 44 0 2147 85 20 14 chr9 35929134 35929428 -81933199 - AluSq SINE Alu -17 296 1 258 32 0 0 chr9 35929611 35929642 -81932985 + (A)n Simple_repeat Simple_repeat 1 31 0 1830 126 0 8 chr9 35930014 35930277 -81932350 - AluSx SINE Alu -18 294 34 317 167 86 126 chr9 35930296 35930333 -81932294 - L1ME4a LINE L1 0 6121 6084 1855 147 0 11 chr9 35930333 35930612 -81932015 + AluJb SINE Alu 20 295 -17 317 167 86 126 chr9 35930612 35930748 -81931879 - L1ME4a LINE L1 -37 6084 5955 2364 68 10 26 chr9 35930748 35931059 -81931568 - AluY SINE Alu -5 306 1 1783 166 0 71 chr9 35931061 35931230 -81931397 - AluJb SINE Alu -9 303 124 2117 134 0 3 chr9 35931230 35931522 -81931105 - AluSx SINE Alu -16 296 6 1783 166 0 71 chr9 35931522 35931536 -81931091 - AluJb SINE Alu -188 124 111 2403 77 3 0 chr9 35931536 35931834 -81930793 - AluY SINE Alu -12 299 1 1783 166 0 71 chr9 35931834 35931975 -81930652 - AluJb SINE Alu -201 111 1 229 330 113 10 chr9 35932004 35932101 -81930526 - L2 LINE L2 -484 2830 2724 1947 161 3 0 chr9 35932328 35932626 -81930001 + AluJo SINE Alu 1 299 -13 1862 180 0 6 chr9 35934355 35934666 -81927961 - AluJo SINE Alu -3 309 1 21 0 0 0 chr9 35934673 35934694 -81927933 + AT_rich Low_complexity Low_complexity 1 21 0 2554 58 0 0 chr9 35935281 35935575 -81927052 + AluY SINE Alu 1 294 -17 1282 112 6 0 chr9 35935685 35935854 -81926773 - AluSq SINE Alu -143 170 1 2258 72 13 16 chr9 35935856 35936160 -81926467 - AluY SINE Alu -8 303 1 2555 55 0 0 chr9 35936168 35936477 -81926150 - AluY SINE Alu -2 309 1 700 116 80 0 chr9 35936713 35936825 -81925802 - AluJo SINE Alu -177 135 15 2107 114 0 0 chr9 35936906 35937228 -81925399 - AluSx SINE Alu 0 324 3 940 95 0 14 chr9 35937337 35937485 -81925142 + (TTTC)n Simple_repeat Simple_repeat 2 147 0 1644 79 0 0 chr9 35937485 35937688 -81924939 - AluY SINE Alu -41 270 68 1156 67 0 0 chr9 35937688 35937823 -81924804 - AluY SINE Alu -176 135 1 2869 112 26 33 chr9 35937823 35938002 -81924625 + Tigger3(Golem) DNA MER2_type 2561 2740 -288 2073 102 3 88 chr9 35938002 35938344 -81924283 - AluSp SINE Alu 0 313 1 2869 112 26 33 chr9 35938344 35938620 -81924007 + Tigger3(Golem) DNA MER2_type 2740 3013 -15 261 298 81 56 chr9 35938864 35939025 -81923602 + L2 LINE L2 2588 2752 -562 211 350 87 0 chr9 35939367 35939470 -81923157 - L2 LINE L2 -11 3261 3150 4093 140 21 55 chr9 35939690 35939753 -81922874 - L1MB7 LINE L1 -5 6179 6115 1955 141 3 7 chr9 35939753 35940052 -81922575 - AluJb SINE Alu -14 298 1 4093 140 21 55 chr9 35940052 35940808 -81921819 - L1MB7 LINE L1 -69 6115 5388 1928 103 4 4 chr9 35941240 35941493 -81921134 - AluSx SINE Alu -23 289 37 399 341 50 0 chr9 35941844 35942023 -81920604 + MIR SINE MIR 75 262 0 577 244 152 35 chr9 35942854 35943084 -81919543 + MIR SINE MIR 6 262 0 1491 177 103 0 chr9 35944349 35944631 -81917996 - AluJb SINE Alu 0 312 2 1997 134 20 3 chr9 35944710 35945009 -81917618 - AluSx SINE Alu -8 304 1 2028 145 0 13 chr9 35945663 35945974 -81916653 - AluSx SINE Alu -5 307 1 2755 79 37 80 chr9 35945974 35946031 -81916596 - L1MA1 LINE L1 -180 6122 6064 2286 90 7 0 chr9 35946031 35946331 -81916296 - AluSg SINE Alu -8 302 1 2755 79 37 80 chr9 35946331 35946649 -81915978 - L1MA1 LINE L1 -238 6064 5765 2184 117 3 0 chr9 35946649 35946947 -81915680 - AluSq SINE Alu -14 299 1 2755 79 37 80 chr9 35946947 35947071 -81915556 - L1MA1 LINE L1 -537 5765 5637 24 0 0 0 chr9 35947108 35947132 -81915495 + AT_rich Low_complexity Low_complexity 1 24 0 1118 130 79 6 chr9 35947206 35947383 -81915244 - AluJo SINE Alu -122 190 1 275 300 154 33 chr9 35947397 35947670 -81914957 - HAL1 LINE L1 -1543 964 659 351 304 190 36 chr9 35947710 35948068 -81914559 - HAL1 LINE L1 -1953 554 142 705 139 0 0 chr9 35948075 35948176 -81914451 + FLAM_C SINE Alu 17 117 -26 1705 142 94 14 chr9 35948262 35948550 -81914077 - AluJb SINE Alu -1 311 1 1938 151 7 0 chr9 35949600 35949904 -81912723 - AluSx SINE Alu -3 309 4 391 290 59 32 chr9 35949949 35950201 -81912426 - L1ME LINE L1 -335 5786 5519 2315 93 7 0 chr9 35950227 35950518 -81912109 - AluSg SINE Alu -17 293 1 1881 184 0 3 chr9 35960371 35960675 -81901952 + AluJo SINE Alu 1 303 -9 764 146 183 0 chr9 35961025 35961162 -81901465 - MER20 DNA MER1_type 0 219 58 223 264 157 16 chr9 35961235 35961356 -81901271 + MIR3 SINE MIR 18 155 -53 284 318 0 11 chr9 35961667 35961755 -81900872 + (CA)n Simple_repeat Simple_repeat 2 88 0 717 274 103 27 chr9 35962008 35962258 -81900369 + L1MC4 LINE L1 5345 5574 -547 798 150 0 30 chr9 35962258 35962391 -81900236 + FLAM_A SINE Alu 1 129 -4 717 274 103 27 chr9 35962391 35962585 -81900042 + L1MC4 LINE L1 5574 5823 -298 243 283 53 26 chr9 35962694 35962807 -81899820 + HAL1b LINE L1 1204 1319 -29 2081 119 0 3 chr9 35962873 35963181 -81899446 + AluSx SINE Alu 1 307 0 344 208 19 28 chr9 35963897 35964003 -81898624 - L1MC4a LINE L1 -1897 5911 5807 1722 150 44 27 chr9 35964120 35964413 -81898214 - AluJb SINE Alu -14 298 1 995 138 120 71 chr9 35964543 35964709 -81897918 - MER46A DNA MER2_type -2495 236 55 1702 158 0 54 chr9 35964709 35964860 -81897767 + AluJb SINE Alu 1 128 -184 342 0 0 0 chr9 35964860 35964898 -81897729 + (TA)n Simple_repeat Simple_repeat 2 39 0 1702 158 0 54 chr9 35964898 35965062 -81897565 + AluJb SINE Alu 128 299 -13 995 138 120 71 chr9 35965062 35965120 -81897507 - MER46A DNA MER2_type -2676 55 1 311 197 33 0 chr9 35965846 35965907 -81896720 - MIR3 SINE MIR -9 199 137 718 110 0 47 chr9 35965912 35966039 -81896588 - FLAM_C SINE Alu 0 143 23 2114 110 0 26 chr9 35966324 35966633 -81895994 + AluSx SINE Alu 1 301 -11 296 234 97 106 chr9 35967074 35967343 -81895284 + L1MC4 LINE L1 5801 6071 -1971 1737 177 0 3 chr9 35967343 35967654 -81894973 - AluJo SINE Alu -2 310 1 296 234 97 106 chr9 35967654 35968085 -81894542 + L1MC4 LINE L1 6071 6505 -1537 1944 151 0 0 chr9 35968085 35968377 -81894250 - AluJb SINE Alu -20 292 1 296 234 97 106 chr9 35968377 35968583 -81894044 + L1MC4 LINE L1 6505 6711 -1331 2176 108 0 3 chr9 35968583 35968890 -81893737 + AluSg SINE Alu 3 308 -2 296 234 97 106 chr9 35968890 35969664 -81892963 + L1MC4 LINE L1 6711 7495 -547 1549 138 43 20 chr9 35969711 35970015 -81892612 - MER33 DNA MER1_type -22 302 1 432 236 0 50 chr9 35970019 35970180 -81892447 + L1MC5 LINE L1 7345 7497 -464 679 208 101 68 chr9 35970187 35970354 -81892273 + L1MC5 LINE L1 7547 7707 -254 1912 108 35 14 chr9 35970354 35970640 -81891987 - AluSq SINE Alu -21 292 1 679 208 101 68 chr9 35970640 35970685 -81891942 + L1MC5 LINE L1 7707 7749 -212 2249 101 0 0 chr9 35970685 35970992 -81891635 - AluSx SINE Alu -5 307 1 679 208 101 68 chr9 35970992 35971143 -81891484 + L1MC5 LINE L1 7749 7923 -38 2316 46 0 0 chr9 35971585 35971904 -81890723 - AluY SINE Alu 0 319 1 705 189 8 0 chr9 35971994 35972116 -81890511 + FLAM_A SINE Alu 1 123 -19 2230 82 10 0 chr9 35972127 35972418 -81890209 + AluSc SINE Alu 1 294 -15 2512 68 0 0 chr9 35972420 35972731 -81889896 + AluY SINE Alu 1 311 0 1504 206 14 0 chr9 35973498 35973784 -81888843 - AluJo SINE Alu -22 290 1 625 120 15 2 chr9 35974050 35974310 -81888317 + AluSx SINE Alu 1 312 0 1788 143 18 7 chr9 35974397 35974683 -81887944 - AluJo SINE Alu -19 293 5 2059 128 0 0 chr9 35974707 35975003 -81887624 - AluSx SINE Alu -16 296 1 1734 159 0 3 chr9 35975217 35975531 -81887096 + AluJo SINE Alu 1 313 0 2469 65 0 0 chr9 35975679 35975985 -81886642 + AluY SINE Alu 1 306 -5 1091 163 22 0 chr9 35977950 35978134 -81884493 + AluJo SINE Alu 108 295 -17 252 86 0 0 chr9 35978352 35978387 -81884240 + (A)n Simple_repeat Simple_repeat 1 35 0 1601 197 0 3 chr9 35979660 35979950 -81882677 - AluJo SINE Alu -23 289 1 745 109 130 115 chr9 35979950 35980142 -81882485 + AluJb SINE Alu 118 312 0 811 92 0 84 chr9 35980205 35980336 -81882291 - FLAM_C SINE Alu -7 136 17 483 302 187 34 chr9 35980343 35980701 -81881926 + HAL1 LINE L1 142 554 -1953 270 300 154 33 chr9 35980741 35981014 -81881613 + HAL1 LINE L1 659 964 -1543 1039 130 79 6 chr9 35981028 35981205 -81881422 + AluJo SINE Alu 1 190 -122 24 0 0 0 chr9 35981279 35981303 -81881324 + AT_rich Low_complexity Low_complexity 1 24 0 2867 82 29 74 chr9 35981340 35981464 -81881163 + L1MA1 LINE L1 5637 5765 -537 2062 117 3 0 chr9 35981464 35981762 -81880865 + AluSq SINE Alu 1 299 -14 2867 82 29 74 chr9 35981762 35982136 -81880491 + L1MA1 LINE L1 5765 6119 -183 1869 162 0 0 chr9 35982138 35982434 -81880193 + AluSx SINE Alu 1 296 -16 823 136 15 15 chr9 35982447 35982579 -81880048 + FLAM_C SINE Alu 1 132 -1 2067 110 0 3 chr9 35982585 35982875 -81879752 + AluSc SINE Alu 1 289 -20 295 308 60 34 chr9 35982980 35983097 -81879530 - MIR SINE MIR -137 125 6 2146 109 0 6 chr9 35983147 35983458 -81879169 + AluSg SINE Alu 1 309 -1 250 338 74 7 chr9 35983750 35983898 -81878729 - L1MEd LINE L1 -5346 773 616 22 0 0 0 chr9 35984102 35984124 -81878503 + AT_rich Low_complexity Low_complexity 1 22 0 1779 166 10 13 chr9 35984197 35984510 -81878117 - AluJb SINE Alu 0 312 1 934 294 195 7 chr9 35984510 35985111 -81877516 + L2 LINE L2 1821 2534 -780 804 226 99 12 chr9 35985121 35985373 -81877254 + L1MC4a LINE L1 5500 5773 -348 30 27 0 0 chr9 35985383 35985420 -81877207 + AT_rich Low_complexity Low_complexity 1 37 0 305 284 97 8 chr9 35985425 35985559 -81877068 + L1ME4a LINE L1 5974 6119 -2 593 255 83 55 chr9 35986299 35986625 -81876002 + L2 LINE L2 2925 3259 -54 374 298 50 8 chr9 35987203 35987324 -81875303 - MIR3 SINE MIR -23 185 60 486 257 71 14 chr9 35988921 35989061 -81873566 - MIR3 SINE MIR -31 177 30 185 328 31 16 chr9 35992541 35992605 -81870022 - L2 LINE L2 -3 3310 3246 391 308 46 32 chr9 35993385 35993618 -81869009 + L1MC4a LINE L1 5768 6012 -150 2100 109 0 0 chr9 35993670 35993984 -81868643 + AluSx SINE Alu 1 314 0 831 138 41 0 chr9 35994962 35995085 -81867542 + FLAM_C SINE Alu 1 128 -5 307 181 0 42 chr9 35995094 35995166 -81867461 + L1MB8 LINE L1 5968 6036 -142 530 283 80 22 chr9 35995201 35995427 -81867200 - Charlie8 DNA MER1_type -2135 282 44 2050 133 3 0 chr9 35995556 35995864 -81866763 + AluJo SINE Alu 1 309 -3 276 279 29 31 chr9 35996041 35996192 -81866435 - MIR3 SINE MIR -66 142 4 2392 89 0 0 chr9 35996773 35997086 -81865541 - AluSq SINE Alu 0 313 1 362 132 0 0 chr9 35997093 35997146 -81865481 + L1MB8 LINE L1 6119 6171 -7 617 165 0 9 chr9 35997152 35997261 -81865366 + L1MB7 LINE L1 5812 5919 -265 2230 83 0 10 chr9 35997262 35997562 -81865065 - AluSx SINE Alu -15 297 1 1514 120 127 47 chr9 35997883 35998158 -81864469 - AluSx SINE Alu -15 297 1 746 272 89 10 chr9 35998167 35998480 -81864147 - L1ME4a LINE L1 -273 5848 5511 1829 147 0 18 chr9 35999597 35999915 -81862712 + AluSx SINE Alu 1 313 0 280 109 0 0 chr9 35999923 35999969 -81862658 + L1MB3 LINE L1 6131 6176 -7 1713 153 0 18 chr9 36001502 36001783 -81860844 + AluJb SINE Alu 1 276 -36 312 27 0 0 chr9 36001783 36001820 -81860807 + (TG)n Simple_repeat Simple_repeat 1 37 0 * 324 0 0 0 chr9 36001819 36001855 -81860772 + (GA)n Simple_repeat Simple_repeat 1 36 0 265 266 76 0 chr9 36002673 36002752 -81859875 - MER5A DNA MER1_type -95 94 10 380 326 141 5 chr9 36003016 36003200 -81859427 - MIR SINE MIR -5 257 49 371 262 85 7 chr9 36003243 36003384 -81859243 + MARNA DNA Mariner 25 176 -410 544 340 65 63 chr9 36003621 36003684 -81858943 - L2 LINE L2 -17 3255 3194 1581 148 57 11 chr9 36003684 36003948 -81858679 + AluJb SINE Alu 1 276 -36 544 340 65 63 chr9 36003948 36004758 -81857869 - L2 LINE L2 -78 3194 2372 1703 155 17 3 chr9 36005615 36005905 -81856722 - AluJb SINE Alu -18 294 1 2114 84 4 0 chr9 36006006 36006317 -81856310 + AluSq SINE Alu 8 319 0 197 250 83 0 chr9 36007817 36007889 -81854738 + L2 LINE L2 2825 2902 -411 1256 122 19 42 chr9 36007980 36008193 -81854434 - AluJb SINE Alu -20 292 85 192 261 65 43 chr9 36009260 36009352 -81853275 - MIR SINE MIR -95 113 20 1304 184 0 125 chr9 36011051 36011195 -81851432 + AluSx SINE Alu 5 85 -217 2133 73 0 0 chr9 36011195 36011467 -81851160 + AluY SINE Alu 40 311 0 1304 184 0 125 chr9 36011467 36011658 -81850969 + AluSx SINE Alu 85 298 -4 2095 80 25 0 chr9 36011869 36012145 -81850482 + AluSc SINE Alu 16 298 -11 1576 144 115 0 chr9 36012569 36012839 -81849788 - AluJb SINE Alu -11 301 1 182 191 0 16 chr9 36013111 36013174 -81849453 + (CA)n Simple_repeat Simple_repeat 1 62 0 2634 236 101 23 chr9 36013206 36013680 -81848947 - HAL1 LINE L1 -1618 889 453 2057 114 0 23 chr9 36013680 36013986 -81848641 - AluSq SINE Alu -14 299 1 2634 236 101 23 chr9 36013986 36014334 -81848293 - HAL1 LINE L1 -2054 453 3 1041 150 12 0 chr9 36014464 36014633 -81847994 - AluJb SINE Alu -8 304 136 331 167 0 0 chr9 36014734 36014788 -81847839 - Tigger2a DNA MER2_type -40 394 341 2312 107 17 28 chr9 36014818 36015173 -81847454 - Tigger2a DNA MER2_type -83 351 1 2282 237 34 7 chr9 36015174 36015850 -81846777 - L1M4 LINE L1 -2424 3722 3029 254 165 35 12 chr9 36015876 36015961 -81846666 + CT-rich Low_complexity Low_complexity 3 89 0 510 278 9 0 chr9 36015966 36016074 -81846553 - FLAM_A SINE Alu -33 109 1 3022 171 29 14 chr9 36016120 36016764 -81845863 - L1MA7 LINE L1 -180 6111 5478 2409 105 3 0 chr9 36016764 36017070 -81845557 - AluSx SINE Alu -5 307 1 3022 171 29 14 chr9 36017070 36017474 -81845153 - L1MA7 LINE L1 -813 5478 2527 1990 125 14 11 chr9 36018143 36018457 -81844170 + AluSc SINE Alu 1 315 0 752 148 0 0 chr9 36018460 36018568 -81844059 + AluJo/FRAM SINE Alu 166 273 -39 203 100 0 50 chr9 36018576 36018616 -81844011 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 2027 139 10 7 chr9 36019526 36019828 -81842799 + AluSx SINE Alu 2 304 -8 850 169 0 0 chr9 36019881 36020011 -81842616 - FLAM_C SINE Alu -12 131 2 273 29 0 0 chr9 36021666 36021700 -81840927 + (TG)n Simple_repeat Simple_repeat 2 35 0 260 313 116 14 chr9 36021783 36021930 -81840697 - L2 LINE L2 -588 2726 2565 197 303 147 28 chr9 36022626 36022735 -81839892 + L3 LINE CR1 1317 1438 -139 331 289 10 10 chr9 36022763 36022860 -81839767 + MIR SINE MIR 41 137 -71 999 190 50 5 chr9 36023083 36023283 -81839344 + MER3 DNA MER1_type 1 209 0 180 275 159 53 chr9 36023330 36023401 -81839226 - MIR SINE MIR -1 261 199 1249 44 0 13 chr9 36023401 36023559 -81839068 - L1PA5 LINE L1 0 6154 5999 180 275 159 53 chr9 36023559 36023676 -81838951 - MIR SINE MIR -63 199 53 847 228 76 20 chr9 36024088 36024285 -81838342 - MIR SINE MIR -1 261 54 2254 97 68 31 chr9 36024362 36024713 -81837914 - THE1B LTR MaLR 0 364 1 11893 87 15 5 chr9 36024713 36026277 -81836350 - THE1B-int LTR MaLR 0 1580 1 2104 121 59 36 chr9 36026277 36026633 -81835994 - THE1B LTR MaLR 0 364 1 1668 116 100 4 chr9 36026823 36027073 -81835554 + AluSg SINE Alu 6 279 -31 180 0 0 0 chr9 36027421 36027441 -81835186 + (TC)n Simple_repeat Simple_repeat 1 20 0 2196 127 0 0 chr9 36030878 36031170 -81831457 - AluSx SINE Alu -20 292 1 428 366 52 17 chr9 36031546 36031833 -81830794 + L2 LINE L2 2555 2851 -463 2139 117 3 33 chr9 36032028 36032335 -81830292 + AluJb SINE Alu 1 298 -14 284 266 64 18 chr9 36033331 36033440 -81829187 - MIR SINE MIR -119 143 30 2318 101 23 0 chr9 36035185 36035491 -81827136 - AluSq SINE Alu 0 313 1 1865 145 0 10 chr9 36035491 36035787 -81826840 - AluJo SINE Alu -19 293 1 2041 142 0 7 chr9 36039720 36040015 -81822612 + AluSx SINE Alu 1 293 -19 2005 144 3 3 chr9 36040810 36041109 -81821518 + AluSx SINE Alu 1 299 -13 969 276 4 8 chr9 36041179 36041418 -81821209 + MIR SINE MIR 1 238 -24 333 301 87 23 chr9 36041433 36041606 -81821021 + L2 LINE L2 2631 2814 -500 187 325 80 69 chr9 36041613 36041976 -81820651 - L2 LINE L2 -881 2433 2067 225 255 204 0 chr9 36042221 36042319 -81820308 - L2 LINE L2 -5 3267 3150 988 343 142 27 chr9 36042920 36044455 -81818172 - L2 LINE L2 -240 3032 1324 691 0 0 0 chr9 36045549 36045662 -81816965 + L1PA8 LINE L1 6071 6183 0 1185 200 4 13 chr9 36046049 36046279 -81816348 - AluJo SINE Alu 0 312 85 1157 166 10 5 chr9 36047088 36047281 -81815346 + AluJo SINE Alu 85 278 -34 570 41 0 0 chr9 36047296 36047369 -81815258 + (GAAA)n Simple_repeat Simple_repeat 1 73 0 2189 123 7 0 chr9 36047528 36047836 -81814791 - AluSg SINE Alu 0 310 1 2499 91 3 0 chr9 36048136 36048445 -81814182 - AluSq SINE Alu -3 310 1 264 243 65 19 chr9 36048513 36048620 -81814007 - L1ME4a LINE L1 -13 6108 5997 537 198 10 0 chr9 36048620 36048721 -81813906 - FLAM_A SINE Alu -6 136 35 1953 147 3 17 chr9 36048749 36049048 -81813579 - AluJb SINE Alu -17 295 1 375 264 88 41 chr9 36049121 36049267 -81813360 - L1MC4 LINE L1 -1 8041 7903 1450 171 50 67 chr9 36049267 36049565 -81813062 - AluJb SINE Alu -6 296 4 375 264 88 41 chr9 36049565 36049736 -81812891 - L1MC4 LINE L1 -139 7903 7709 183 80 0 0 chr9 36050160 36050185 -81812442 + (GAAA)n Simple_repeat Simple_repeat 1 25 0 2286 128 0 0 chr9 36050310 36050615 -81812012 - AluSg1 SINE Alu -4 305 1 317 283 64 0 chr9 36050650 36050803 -81811824 - L1ME4a LINE L1 -298 5823 5676 633 243 76 11 chr9 36050917 36051102 -81811525 - MIR3 SINE MIR -9 199 3 2259 108 0 7 chr9 36051219 36051552 -81811075 - AluSx SINE Alu 0 312 1 342 91 15 45 chr9 36051932 36051998 -81810629 + Alu SINE Alu 1 64 -236 2333 49 3 11 chr9 36052823 36053132 -81809495 + AluY SINE Alu 1 307 0 485 265 62 49 chr9 36053218 36053380 -81809247 + MIR SINE MIR 91 254 -8 2407 75 3 0 chr9 36053381 36053673 -81808954 + AluY SINE Alu 1 293 -18 828 154 0 44 chr9 36053710 36053846 -81808781 + FLAM_C SINE Alu 1 130 -3 881 256 44 24 chr9 36053857 36054240 -81808387 + L1MEd LINE L1 843 1233 -4886 455 303 90 50 chr9 36054350 36054627 -81808000 + L1MEd LINE L1 1385 1730 -4459 1997 256 89 2 chr9 36054691 36055296 -81807331 + MLT2F LTR ERVL 6 663 0 306 0 0 0 chr9 36055358 36055392 -81807235 + (CA)n Simple_repeat Simple_repeat 2 35 0 1722 159 39 4 chr9 36055492 36055772 -81806855 + AluJo SINE Alu 22 310 0 475 283 101 14 chr9 36055972 36056340 -81806287 + L1MEd LINE L1 2618 3017 -3112 2410 92 0 0 chr9 36057456 36057748 -81804879 - AluSg SINE Alu -13 297 6 271 233 22 11 chr9 36058055 36058145 -81804482 - L1MC5 LINE L1 -58 7903 7813 213 191 43 0 chr9 36058147 36058194 -81804433 - MIR SINE MIR -73 135 87 232 186 29 14 chr9 36060579 36060649 -81801978 - L1MC5 LINE L1 -58 7903 7833 314 194 32 0 chr9 36060651 36060713 -81801914 - MIR SINE MIR -58 150 87 927 199 131 5 chr9 36061418 36061624 -81801003 + MIR SINE MIR 12 243 -19 721 167 14 58 chr9 36061921 36062059 -81800568 + FLAM_A SINE Alu 1 132 -1 2181 79 43 0 chr9 36062060 36062340 -81800287 + AluY SINE Alu 1 292 -19 254 241 299 22 chr9 36062660 36062797 -81799830 - MIR SINE MIR 0 262 88 28 29 0 0 chr9 36063037 36063072 -81799555 + AT_rich Low_complexity Low_complexity 1 35 0 474 339 66 50 chr9 36063210 36063573 -81799054 + L2 LINE L2 2420 2788 -526 1674 177 6 61 chr9 36064713 36065041 -81797586 + AluJo SINE Alu 1 310 -2 375 306 68 50 chr9 36065155 36065377 -81797250 + MIR SINE MIR 20 245 -17 1729 280 33 61 chr9 36066160 36066834 -81795793 + MLT2F LTR ERVL 1 655 -8 243 158 123 0 chr9 36066878 36066935 -81795692 - L2 LINE L2 -215 3057 2994 1882 184 3 10 chr9 36067904 36068214 -81794413 - AluJb SINE Alu -4 308 1 752 271 22 47 chr9 36068221 36068367 -81794260 - L1ME LINE L1 -297 5824 5676 2494 86 0 0 chr9 36068367 36068670 -81793957 - AluSp SINE Alu -10 303 1 752 271 22 47 chr9 36068670 36068844 -81793783 - L1ME LINE L1 -445 5676 5512 603 182 0 101 chr9 36069163 36069217 -81793410 + FLAM_A SINE Alu 10 68 -243 1967 70 0 25 chr9 36069217 36069459 -81793168 - AluSc SINE Alu -20 289 54 603 182 0 101 chr9 36069459 36069552 -81793075 + FLAM_A SINE Alu 68 142 -169 1890 154 0 48 chr9 36069581 36069893 -81792734 + AluJb SINE Alu 1 297 -15 201 224 92 102 chr9 36071039 36071101 -81791526 + MIR3 SINE MIR 107 169 -39 1976 145 21 0 chr9 36071101 36071390 -81791237 + AluJb SINE Alu 1 295 -17 201 224 92 102 chr9 36071390 36071425 -81791202 + MIR3 SINE MIR 169 203 -5 2481 85 0 3 chr9 36071471 36071776 -81790851 - AluSx SINE Alu -8 304 1 903 132 8 0 chr9 36072396 36072517 -81790110 - FLAM_C SINE Alu -21 122 1 2309 112 0 0 chr9 36073052 36073348 -81789279 - AluSx SINE Alu -14 298 3 1778 172 59 0 chr9 36074276 36074396 -81788231 + AluJo SINE Alu 1 113 -199 225 0 0 0 chr9 36074396 36074421 -81788206 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 1778 172 59 0 chr9 36074421 36074590 -81788037 + AluJo SINE Alu 113 307 -5 252 224 106 59 chr9 36075519 36075604 -81787023 + L2 LINE L2 3168 3256 -16 2096 125 17 0 chr9 36075615 36075903 -81786724 + AluSx SINE Alu 1 293 -19 1954 145 17 0 chr9 36075928 36076218 -81786409 + AluSx SINE Alu 1 295 -17 2126 134 0 25 chr9 36076220 36076540 -81786087 + AluSx SINE Alu 1 312 0 2112 112 3 11 chr9 36076957 36077243 -81785384 - AluSp SINE Alu -29 284 1 229 344 44 11 chr9 36077861 36077951 -81784676 - MIR3 SINE MIR -11 197 105 630 39 0 0 chr9 36078017 36078094 -81784533 + (TA)n Simple_repeat Simple_repeat 2 78 0 2577 60 0 28 chr9 36078179 36078496 -81784131 - AluY SINE Alu -3 308 1 2377 84 0 26 chr9 36079000 36079308 -81783319 - AluSx SINE Alu -12 300 1 949 167 67 58 chr9 36079309 36079549 -81783078 + L1MB7 LINE L1 5912 6153 -31 1869 156 0 20 chr9 36079549 36079844 -81782783 - AluJb SINE Alu -23 289 1 207 100 0 0 chr9 36079861 36079891 -81782736 + (TTTC)n Simple_repeat Simple_repeat 3 32 0 2273 92 0 3 chr9 36129955 36130258 -81732369 - AluY SINE Alu -9 302 1 1704 130 72 0 chr9 36130262 36130539 -81732088 - AluJo SINE Alu -15 297 1 241 342 26 0 chr9 36130600 36130717 -81731910 - L1MC4 LINE L1 -593 7449 7330 454 287 117 18 chr9 36131068 36131291 -81731336 + MIR SINE MIR 13 257 -5 193 188 350 12 chr9 36132859 36132939 -81729688 - MIR SINE MIR -81 127 21 890 118 0 0 chr9 36134497 36134616 -81728011 + AluSq/x SINE Alu 1 119 -193 239 372 83 16 chr9 36135047 36135168 -81727459 - MIR3 SINE MIR -32 176 48 298 206 11 54 chr9 36135418 36135510 -81727117 + MER97c DNA MER1_type? 3 90 -1000 245 149 164 30 chr9 36135474 36135541 -81727086 - U2 snRNA snRNA -112 76 1 * 366 157 37 102 chr9 36135540 36135585 -81727042 + MER97a DNA MER1_type? 72 118 -776 2040 41 107 7 chr9 36135585 36135856 -81726771 + AluY SINE Alu 1 298 -13 366 157 37 102 chr9 36135856 36135918 -81726709 + MER97a DNA MER1_type? 118 172 -722 1760 125 114 0 chr9 36136117 36136397 -81726230 + AluSq SINE Alu 2 313 0 490 313 66 59 chr9 36136422 36137092 -81725535 - L2 LINE L2 -1 3271 2538 213 60 20 40 chr9 36137292 36137342 -81725285 + (TTTTTG)n Simple_repeat Simple_repeat 6 54 0 1904 135 0 10 chr9 36137522 36137811 -81724816 + AluSx SINE Alu 1 286 -26 697 180 16 8 chr9 36137843 36137971 -81724656 + AluJo SINE Alu 13 141 -171 1997 125 14 0 chr9 36138072 36138360 -81724267 - AluSq SINE Alu -21 292 1 1924 128 0 0 chr9 36138365 36138631 -81723996 - AluSx SINE Alu -46 266 1 392 353 65 61 chr9 36138695 36139157 -81723470 - L1ME4a LINE L1 -64 6057 5594 6925 122 25 67 chr9 36139216 36140581 -81722046 + SVA Other Other 79 1386 0 183 100 0 0 chr9 36140784 36140814 -81721813 + (A)n Simple_repeat Simple_repeat 1 30 0 2442 64 0 6 chr9 36140910 36141223 -81721404 - AluY SINE Alu 0 311 1 258 246 87 0 chr9 36141494 36141563 -81721064 + MIR SINE MIR 186 260 -2 * 377 324 98 17 chr9 36141555 36141728 -81720899 - L2 LINE L2 0 3313 3127 2124 107 7 0 chr9 36141790 36142088 -81720539 + AluSx SINE Alu 1 300 -12 2262 76 0 7 chr9 36142096 36142384 -81720243 + AluSx SINE Alu 5 290 -22 254 191 246 9 chr9 36143723 36143833 -81718794 - L2 LINE L2 0 3313 3178 1539 111 5 9 chr9 36143894 36144111 -81718516 - AluJo SINE Alu -13 299 84 2298 67 3 0 chr9 36144137 36144456 -81718171 + AluSp SINE Alu 1 320 0 2010 128 0 0 chr9 36144751 36145072 -81717555 + AluSx SINE Alu 3 323 0 2234 98 0 3 chr9 36145151 36145448 -81717179 + AluSc SINE Alu 1 296 -13 1639 152 73 13 chr9 36145464 36145780 -81716847 - L1MB7 LINE L1 -17 6167 5833 2018 150 0 13 chr9 36145786 36146100 -81716527 - AluJb SINE Alu -2 310 1 2046 111 3 7 chr9 36146335 36146654 -81715973 - AluSx SINE Alu 0 318 1 220 27 54 0 chr9 36146656 36146693 -81715934 + (TTTG)n Simple_repeat Simple_repeat 4 42 0 249 348 0 44 chr9 36146967 36147102 -81715525 - MIR3 SINE MIR -9 199 71 378 312 89 7 chr9 36147246 36147467 -81715160 + L2 LINE L2 2790 3027 -245 187 234 0 94 chr9 36147537 36147601 -81715026 + L2 LINE L2 3163 3220 -93 534 306 104 20 chr9 36147680 36148027 -81714600 + MLT1K LTR MaLR 211 586 -2 2198 108 0 0 chr9 36148128 36148425 -81714202 + AluSq SINE Alu 1 297 -16 1419 191 19 44 chr9 36148431 36148751 -81713876 + AluJo SINE Alu 1 312 0 2099 113 0 0 chr9 36148765 36149070 -81713557 - AluSx SINE Alu 0 305 1 1805 166 16 3 chr9 36149105 36149412 -81713215 + AluJo SINE Alu 1 311 -1 2109 109 0 14 chr9 36149416 36149710 -81712917 + AluSx SINE Alu 1 290 -22 209 364 73 33 chr9 36149970 36150121 -81712506 + MIR SINE MIR 16 141 -67 277 288 9 0 chr9 36150503 36150614 -81712013 + (TG)n Simple_repeat Simple_repeat 2 113 0 183 250 39 0 chr9 36151720 36151772 -81710855 + L3b LINE CR1 1352 1405 -178 519 269 47 27 chr9 36152224 36152373 -81710254 - MIR SINE MIR -4 258 107 452 279 93 5 chr9 36152376 36152580 -81710047 - LTR33 LTR ERVL -3 518 297 502 253 62 43 chr9 36152604 36152766 -81709861 - LTR33 LTR ERVL -331 190 26 206 254 60 0 chr9 36152883 36152950 -81709677 + MIR SINE MIR 35 105 -103 208 214 0 0 chr9 36153419 36153461 -81709166 + (CACCC)n Simple_repeat Simple_repeat 4 45 0 2166 115 0 0 chr9 36153741 36154058 -81708569 + AluSq SINE Alu 1 313 0 2196 114 0 0 chr9 36154429 36154727 -81707900 - AluSg SINE Alu -12 298 1 2472 53 0 3 chr9 36154727 36155025 -81707602 - AluY SINE Alu -13 298 1 350 271 181 19 chr9 36155555 36155710 -81706917 - MIR SINE MIR -11 251 72 190 289 50 6 chr9 36156063 36156135 -81706492 + MIR SINE MIR 74 140 -68 228 326 91 0 chr9 36156773 36156905 -81705722 - L2 LINE L2 -608 2706 2563 311 253 121 20 chr9 36156934 36157033 -81705594 - L3 LINE CR1 -125 1452 1344 29 0 0 0 chr9 36157320 36157349 -81705278 + AT_rich Low_complexity Low_complexity 1 29 0 282 164 0 0 chr9 36157861 36157916 -81704711 + (CA)n Simple_repeat Simple_repeat 1 55 0 2290 89 3 13 chr9 36160460 36160773 -81701854 + AluSx SINE Alu 1 310 -2 838 129 23 23 chr9 36161161 36161293 -81701334 + FLAM_C SINE Alu 2 133 0 2121 112 3 0 chr9 36164670 36164965 -81697662 - AluSx SINE Alu -15 297 2 1334 182 30 34 chr9 36165041 36165305 -81697322 - AluJo SINE Alu -16 296 34 2385 79 0 3 chr9 36165507 36165811 -81696816 + AluSq SINE Alu 1 303 -10 1296 185 0 0 chr9 36166081 36166297 -81696330 - AluJo SINE Alu -75 237 22 709 124 0 0 chr9 36166342 36166439 -81696188 + AluSg/x SINE Alu 146 242 -68 560 150 0 0 chr9 36166435 36166515 -81696112 - AluSp SINE Alu -100 213 134 * 1094 382 18 64 chr9 36166515 36166842 -81695785 - AluSx SINE Alu 0 312 1 186 43 0 0 chr9 36166858 36166881 -81695746 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 246 81 0 0 chr9 36166972 36167009 -81695618 + (CA)n Simple_repeat Simple_repeat 1 37 0 2435 82 0 19 chr9 36167632 36167947 -81694680 + AluY SINE Alu 1 309 -2 2188 114 0 13 chr9 36167961 36168097 -81694530 + AluSx SINE Alu 1 137 -175 2266 107 0 20 chr9 36168097 36168395 -81694232 + AluSp SINE Alu 1 292 -21 2188 114 0 13 chr9 36168395 36168565 -81694062 + AluSx SINE Alu 137 303 -9 428 248 74 0 chr9 36169951 36170072 -81692555 - MIR SINE MIR -83 179 50 1516 88 0 0 chr9 36170860 36171041 -81691586 + AluSg SINE Alu 1 181 -129 2209 103 3 38 chr9 36171412 36171732 -81690895 + AluSc SINE Alu 1 309 0 2340 104 3 19 chr9 36171744 36172062 -81690565 + AluSp SINE Alu 1 313 0 2150 95 13 63 chr9 36172536 36172853 -81689774 - AluSq SINE Alu -12 301 1 338 259 0 76 chr9 36172927 36173058 -81689569 - L2 LINE L2 -570 2744 2624 2461 87 0 0 chr9 36173609 36173908 -81688719 - AluSg SINE Alu -11 299 1 1980 105 59 36 chr9 36174242 36174546 -81688081 + AluSq SINE Alu 1 311 -2 258 229 60 24 chr9 36174734 36174817 -81687810 + MIR SINE MIR 36 121 -87 846 81 8 32 chr9 36175370 36175493 -81687134 + FLAM_C SINE Alu 23 142 -1 2343 103 10 3 chr9 36176105 36176415 -81686212 + AluSq SINE Alu 1 312 -1 270 333 75 0 chr9 36176555 36176648 -81685979 - MIR SINE MIR -107 155 56 273 309 13 81 chr9 36177342 36177491 -81685136 + MIR SINE MIR 113 251 -11 190 253 24 60 chr9 36177630 36177713 -81684914 - L2 LINE L2 -38 3275 3196 623 150 67 25 chr9 36177786 36177906 -81684721 - FLAM_C SINE Alu -7 126 2 521 275 67 31 chr9 36181769 36181962 -81680665 - MIR SINE MIR -57 205 6 709 255 114 134 chr9 36186539 36186728 -81675899 + L2 LINE L2 2285 2476 -837 2328 62 24 0 chr9 36186728 36187016 -81675611 + AluY SINE Alu 1 295 -16 709 255 114 134 chr9 36187016 36187307 -81675320 + L2 LINE L2 2476 2771 -542 2053 114 45 10 chr9 36187307 36187597 -81675030 + AluSq SINE Alu 1 300 -13 709 255 114 134 chr9 36187597 36188166 -81674461 + L2 LINE L2 2771 3295 -18 2177 126 13 0 chr9 36189007 36189309 -81673318 + AluSx SINE Alu 1 306 -6 323 365 32 6 chr9 36190532 36190688 -81671939 + L2 LINE L2 2467 2626 -688 315 0 0 0 chr9 36190744 36190779 -81671848 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1883 142 0 0 chr9 36190786 36191061 -81671566 - AluSx SINE Alu -37 275 1 787 247 83 39 chr9 36191061 36191414 -81671213 - L1MC4 LINE L1 -4 8038 7572 185 0 40 0 chr9 36191434 36191459 -81671168 + (TA)n Simple_repeat Simple_repeat 2 27 0 1973 143 7 13 chr9 36191459 36191766 -81670861 - AluSx SINE Alu -7 305 1 711 231 52 9 chr9 36191769 36191981 -81670646 - L1ME3A LINE L1 -5 6165 5945 2442 58 0 10 chr9 36191991 36192312 -81670315 - AluY SINE Alu 0 311 1 324 339 8 0 chr9 36192350 36192480 -81670147 + L2 LINE L2 2654 2784 -530 186 71 0 0 chr9 36192530 36192558 -81670069 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 2138 112 0 18 chr9 36192560 36192845 -81669782 - AluSx SINE Alu -32 280 1 1074 189 219 0 chr9 36192874 36193102 -81669525 - AluJb SINE Alu -34 278 1 266 369 67 17 chr9 36193111 36193290 -81669337 + L2 LINE L2 2841 3028 -244 1339 142 49 0 chr9 36193290 36193494 -81669133 - AluJb SINE Alu -98 214 1 2047 148 13 0 chr9 36193545 36193849 -81668778 - AluSx SINE Alu -2 310 3 198 71 0 0 chr9 36193872 36193900 -81668727 + (TCCC)n Simple_repeat Simple_repeat 2 29 0 2103 124 6 13 chr9 36193909 36194223 -81668404 - AluSx SINE Alu 0 312 1 1010 185 219 0 chr9 36194346 36194584 -81668043 - AluJo SINE Alu -12 290 1 257 250 0 0 chr9 36194642 36194694 -81667933 + L2 LINE L2 3218 3269 -3 1469 116 41 141 chr9 36195041 36195144 -81667483 + AluJb SINE Alu 24 136 -176 2004 119 25 0 chr9 36195144 36195422 -81667205 + AluSg SINE Alu 1 285 -25 1469 116 41 141 chr9 36195422 36195441 -81667186 + AluJb SINE Alu 136 155 -157 2314 112 0 10 chr9 36195441 36195753 -81666874 + AluSx SINE Alu 1 309 -3 1469 116 41 141 chr9 36195753 36195766 -81666861 + AluJb SINE Alu 155 168 -144 2249 96 7 3 chr9 36195766 36196059 -81666568 + AluSg1 SINE Alu 1 294 -15 1469 116 41 141 chr9 36196059 36196241 -81666386 + AluJb SINE Alu 168 311 -1 546 241 36 24 chr9 36196308 36196474 -81666153 + L2 LINE L2 3131 3298 -15 234 0 0 0 chr9 36196474 36196500 -81666127 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 839 114 31 192 chr9 36196615 36196744 -81665883 + LTR23 LTR ERV1 1 149 -288 1637 174 0 52 chr9 36196744 36196942 -81665685 - AluJb SINE Alu -2 310 134 2201 93 7 35 chr9 36196942 36197252 -81665375 + AluSq SINE Alu 1 301 -12 1637 174 0 52 chr9 36197252 36197380 -81665247 - AluJb SINE Alu -178 134 1 839 114 31 192 chr9 36197380 36197398 -81665229 + LTR23 LTR ERV1 149 168 -269 1778 133 64 42 chr9 36197398 36197728 -81664899 + MER1B DNA MER1_type 1 337 0 2503 47 10 7 chr9 36197730 36198026 -81664601 - AluY SINE Alu -13 298 2 839 114 31 192 chr9 36198026 36198051 -81664576 + LTR23 LTR ERV1 169 127 -310 1355 188 21 76 chr9 36198051 36198183 -81664444 + AluJo SINE Alu 1 139 -173 2055 94 94 0 chr9 36198183 36198469 -81664158 + AluSp SINE Alu 1 313 0 1355 188 21 76 chr9 36198469 36198666 -81663961 + AluJo SINE Alu 139 312 0 839 114 31 192 chr9 36198666 36198743 -81663884 + LTR23 LTR ERV1 126 214 -223 1283 145 8 68 chr9 36198743 36198977 -81663650 + AluJb SINE Alu 1 220 -92 1018 118 0 0 chr9 36199105 36199240 -81663387 + AluY SINE Alu 115 249 -62 1483 115 28 5 chr9 36199240 36199272 -81663355 + AluSg/x SINE Alu 83 113 -197 243 0 0 0 chr9 36199272 36199299 -81663328 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1483 115 28 5 chr9 36199299 36199483 -81663144 + AluSg/x SINE Alu 113 304 -6 438 97 43 11 chr9 36199488 36199581 -81663046 + LTR23 LTR ERV1 210 305 -132 645 196 49 98 chr9 36199583 36199787 -81662840 + AluJo SINE Alu 2 195 -117 2238 94 0 17 chr9 36199836 36200158 -81662469 - AluSx SINE Alu 0 319 3 2092 116 0 33 chr9 36200164 36200467 -81662160 - AluSc SINE Alu -16 293 1 1292 113 15 49 chr9 36200608 36200778 -81661849 - AluY SINE Alu -14 297 134 2619 61 0 6 chr9 36200778 36201089 -81661538 - AluY SINE Alu -2 309 1 1292 113 15 49 chr9 36201089 36201122 -81661505 - AluY SINE Alu -177 134 101 4578 175 14 3 chr9 36201122 36202012 -81660615 + L1 LINE L1 4433 5331 -815 1356 167 5 14 chr9 36202012 36202234 -81660393 + AluJo SINE Alu 1 220 -92 303 28 0 0 chr9 36202303 36202339 -81660288 + (TA)n Simple_repeat Simple_repeat 1 36 0 981 150 70 37 chr9 36202352 36202539 -81660088 + AluJb SINE Alu 14 206 -106 2078 121 0 0 chr9 36202853 36203117 -81659510 + AluSx SINE Alu 1 264 -48 216 0 0 0 chr9 36203296 36203320 -81659307 + (CA)n Simple_repeat Simple_repeat 2 25 0 1810 173 0 26 chr9 36204351 36204657 -81657970 - AluJo SINE Alu -14 298 1 186 43 0 0 chr9 36204661 36204684 -81657943 + (TG)n Simple_repeat Simple_repeat 1 23 0 2160 119 10 0 chr9 36204752 36205045 -81657582 - AluSx SINE Alu -16 296 1 333 353 87 7 chr9 36205050 36205200 -81657427 - L1MC4a LINE L1 -1923 5885 5724 233 237 172 0 chr9 36205709 36205802 -81656825 - MIR SINE MIR -118 144 36 619 88 68 101 chr9 36206424 36206572 -81656055 - AluSg SINE Alu -166 144 2 1396 164 44 4 chr9 36206575 36206849 -81655778 - L1MB2 LINE L1 -42 6129 5845 1198 136 0 23 chr9 36206861 36207038 -81655589 - AluSq SINE Alu -10 303 131 962 167 12 11 chr9 36207038 36207205 -81655422 - L1MB2 LINE L1 -348 5823 5667 1377 96 64 0 chr9 36207205 36207425 -81655202 - L1PA14 LINE L1 0 6161 5928 962 167 12 11 chr9 36207425 36207449 -81655178 - L1MB2 LINE L1 -504 5667 5645 788 156 78 90 chr9 36207449 36207557 -81655070 + ORSL DNA AcHobo 23 131 -144 2028 154 3 0 chr9 36207557 36207855 -81654772 - AluSq SINE Alu -14 299 1 788 156 78 90 chr9 36207855 36208002 -81654625 + ORSL DNA AcHobo 131 275 0 2089 173 71 19 chr9 36208336 36208798 -81653829 + MER66B LTR ERV1 1 486 0 1764 99 0 0 chr9 36208826 36209049 -81653578 - AluSg/x SINE Alu -14 296 74 23 0 0 0 chr9 36209052 36209075 -81653552 + AT_rich Low_complexity Low_complexity 1 23 0 399 243 128 40 chr9 36209161 36209465 -81653162 - L1MC5 LINE L1 -277 7684 7354 741 186 0 21 chr9 36209475 36209609 -81653018 + AluJb SINE Alu 2 134 -178 2539 62 0 0 chr9 36209609 36209901 -81652726 + AluY SINE Alu 2 293 -18 390 262 75 114 chr9 36210012 36210451 -81652176 - L1MB2 LINE L1 -872 5274 4853 1205 171 9 23 chr9 36210457 36210674 -81651953 + AluJb SINE Alu 87 300 -12 2098 92 29 57 chr9 36210676 36210990 -81651637 + AluY SINE Alu 1 305 -6 833 246 110 70 chr9 36211005 36211189 -81651438 - L1MB2 LINE L1 -1301 4845 4670 1745 178 3 44 chr9 36211189 36211509 -81651118 - AluJo SINE Alu -5 307 1 833 246 110 70 chr9 36211509 36211780 -81650847 - L1MB2 LINE L1 -1476 4670 4372 2329 103 0 0 chr9 36211797 36212088 -81650539 - AluY SINE Alu -20 291 1 35 0 0 0 chr9 36212091 36212126 -81650501 + AT_rich Low_complexity Low_complexity 1 35 0 647 211 41 147 chr9 36212298 36212318 -81650309 - L1MB2 LINE L1 -1757 4389 4368 1456 167 23 109 chr9 36212318 36212666 -81649961 - AluYb8 SINE Alu 0 318 1 647 211 41 147 chr9 36212666 36212984 -81649643 - L1MB2 LINE L1 -1778 4368 4104 2336 104 0 0 chr9 36212984 36213281 -81649346 + AluSx SINE Alu 1 297 -15 647 211 41 147 chr9 36213281 36213376 -81649251 - L1MB2 LINE L1 -2042 4104 4001 284 247 62 0 chr9 36213453 36213550 -81649077 + L1MC4 LINE L1 7940 8042 0 837 245 8 42 chr9 36213866 36214131 -81648496 + MIR SINE MIR 5 260 -2 198 275 0 0 chr9 36214273 36214342 -81648285 + (TA)n Simple_repeat Simple_repeat 1 69 0 251 216 115 101 chr9 36214366 36214514 -81648113 + Charlie8 DNA MER1_type 24 173 -2244 385 326 81 27 chr9 36214744 36214965 -81647662 + L1ME4a LINE L1 5659 5891 -230 683 76 98 8 chr9 36214982 36215114 -81647513 - L1MA8 LINE L1 -2 6289 6146 2281 82 0 0 chr9 36215158 36215428 -81647199 + AluSq SINE Alu 1 270 -43 230 135 0 0 chr9 36215428 36215465 -81647162 + AluSq SINE Alu 253 289 -14 3720 146 29 42 chr9 36215498 36215509 -81647118 + L1MA6 LINE L1 5510 5520 -780 1869 165 10 3 chr9 36215509 36215818 -81646809 + AluJb SINE Alu 1 311 -1 3720 146 29 42 chr9 36215818 36216360 -81646267 + L1MA6 LINE L1 5520 6051 -249 2550 84 0 0 chr9 36216360 36216671 -81645956 - AluSp SINE Alu -2 311 1 3720 146 29 42 chr9 36216671 36216918 -81645709 + L1MA6 LINE L1 6051 6300 0 228 35 0 0 chr9 36216931 36216960 -81645667 + (TTA)n Simple_repeat Simple_repeat 1 29 0 2050 136 4 0 chr9 36216960 36217239 -81645388 - AluSx SINE Alu -32 280 1 2150 126 0 0 chr9 36218647 36218932 -81643695 + AluSq SINE Alu 1 285 -28 217 0 0 0 chr9 36218932 36218956 -81643671 + (GAAA)n Simple_repeat Simple_repeat 2 92 0 1969 160 3 13 chr9 36218980 36219292 -81643335 + AluJb SINE Alu 2 310 -2 226 315 79 11 chr9 36219379 36219468 -81643159 + L3 LINE CR1 1226 1320 -257 2268 87 0 10 chr9 36221607 36221905 -81640722 + AluSx SINE Alu 1 295 -17 2584 63 7 0 chr9 36222715 36223018 -81639609 - AluY SINE Alu -6 305 1 322 213 88 110 chr9 36223052 36223188 -81639439 - L1MC5 LINE L1 -31 7930 7798 329 281 29 29 chr9 36223194 36223333 -81639294 + Tigger8 DNA MER2_type 401 539 -127 21 0 0 0 chr9 36223434 36223455 -81639172 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 36224786 36224808 -81637819 + AT_rich Low_complexity Low_complexity 1 22 0 216 267 31 27 chr9 36225118 36225234 -81637393 + MIR SINE MIR 38 207 -55 242 300 64 91 chr9 36225792 36225857 -81636770 - L2 LINE L2 -557 2757 2692 1432 213 52 9 chr9 36225857 36226181 -81636446 - MER58B DNA MER1_type 0 341 4 242 300 64 91 chr9 36226181 36226335 -81636292 - L2 LINE L2 -622 2692 2544 198 0 0 0 chr9 36226847 36226869 -81635758 + (GGA)n Simple_repeat Simple_repeat 1 22 0 185 235 278 17 chr9 36227443 36227558 -81635069 + MIR3 SINE MIR 1 145 -63 201 273 0 0 chr9 36227877 36227921 -81634706 - MIR SINE MIR 0 262 219 784 159 45 70 chr9 36227959 36228116 -81634511 + FRAM SINE Alu 6 158 -18 2000 137 10 7 chr9 36228116 36228409 -81634218 + AluJo SINE Alu 1 294 -18 505 238 19 9 chr9 36228410 36228536 -81634091 - MIR SINE MIR -62 146 45 1787 255 146 39 chr9 36228969 36229206 -81633421 - L2 LINE L2 -340 2974 2764 2025 122 7 0 chr9 36229206 36229494 -81633133 - AluSx SINE Alu -22 290 1 1787 255 146 39 chr9 36229494 36230052 -81632575 - L2 LINE L2 -550 2764 2094 2555 61 0 0 chr9 36230313 36230610 -81632017 - AluY SINE Alu -14 297 1 1368 169 111 69 chr9 36231189 36231621 -81631006 - LTR7 LTR ERV1 0 450 1 320 209 13 3 chr9 36232408 36232486 -81630141 - MIR SINE MIR -43 165 88 2733 23 7 3 chr9 36232506 36232816 -81629811 - AluY SINE Alu 0 311 1 2381 108 0 0 chr9 36232930 36233237 -81629390 + AluSx SINE Alu 1 307 -5 384 238 0 0 chr9 36233498 36233578 -81629049 - MIR SINE MIR -160 102 23 315 322 68 0 chr9 36233997 36234115 -81628512 - MIR3 SINE MIR -23 185 60 228 315 0 0 chr9 36234199 36234253 -81628374 + (TG)n Simple_repeat Simple_repeat 1 54 0 299 130 19 0 chr9 36234316 36234370 -81628257 + CT-rich Low_complexity Low_complexity 4 58 0 832 228 301 8 chr9 36234469 36234851 -81627776 + L2 LINE L2 2819 3312 -1 2067 121 10 7 chr9 36235473 36235770 -81626857 + AluSx SINE Alu 1 298 -14 239 0 32 0 chr9 36235770 36235801 -81626826 + (TA)n Simple_repeat Simple_repeat 2 33 0 986 158 12 12 chr9 36236055 36236220 -81626407 - AluSg/x SINE Alu -12 298 134 2498 80 0 0 chr9 36236221 36236520 -81626107 - AluSc SINE Alu -10 299 1 311 298 7 21 chr9 36236535 36236676 -81625951 - L1ME3 LINE L1 -295 5867 5729 758 263 11 0 chr9 36236808 36236983 -81625644 - MIR SINE MIR -4 258 82 413 289 95 28 chr9 36237006 36237259 -81625368 + L2 LINE L2 2318 2587 -727 341 310 83 39 chr9 36237480 36237709 -81624918 + L2 LINE L2 3025 3263 -9 507 182 94 39 chr9 36238013 36238215 -81624412 + MER106B DNA MER1_type 30 1059 0 414 264 68 27 chr9 36240324 36240472 -81622155 - MIR SINE MIR -70 192 39 768 243 78 10 chr9 36242242 36242448 -81620179 - MIR SINE MIR 0 262 43 1770 161 0 56 chr9 36242519 36242691 -81619936 - AluJb SINE Alu -7 305 158 2284 108 0 3 chr9 36242691 36242988 -81619639 - AluSx SINE Alu -12 300 5 1770 161 0 56 chr9 36242988 36243138 -81619489 - AluJb SINE Alu -154 158 1 687 154 112 0 chr9 36243138 36243307 -81619320 + Charlie5 DNA MER1_type 2398 2585 -27 222 274 161 45 chr9 36243373 36243418 -81619209 - L2 LINE L2 -1451 1863 1825 2335 100 30 0 chr9 36243418 36243719 -81618908 + AluSx SINE Alu 1 310 -2 222 274 161 45 chr9 36243719 36244052 -81618575 - L2 LINE L2 -1489 1825 1441 2277 94 13 3 chr9 36244487 36244786 -81617841 + AluSg SINE Alu 1 302 -8 360 202 115 49 chr9 36244917 36245100 -81617527 + MER102a DNA MER1_type 136 330 0 243 276 126 0 chr9 36245261 36245348 -81617279 - L3 LINE CR1 -550 1027 930 334 305 42 0 chr9 36245462 36245557 -81617070 - MIR SINE MIR -56 206 108 2057 120 50 0 chr9 36245689 36245972 -81616655 + AluSx SINE Alu 1 297 -15 774 251 62 19 chr9 36245972 36246183 -81616444 + MIR SINE MIR 29 248 -14 2038 146 0 0 chr9 36246603 36246897 -81615730 + AluSx SINE Alu 1 294 -18 257 300 113 0 chr9 36246908 36246988 -81615639 - MIR SINE MIR -149 113 25 287 360 18 0 chr9 36247002 36247113 -81615514 - MIR SINE MIR -65 143 31 746 283 261 11 chr9 36247349 36248073 -81614554 + L2 LINE L2 1842 2746 -568 2536 94 0 0 chr9 36248144 36248452 -81614175 - AluSq SINE Alu -3 310 3 186 133 0 0 chr9 36249225 36249255 -81613372 + (TCTG)n Simple_repeat Simple_repeat 1 30 0 447 265 51 0 chr9 36249503 36249601 -81613026 + L2 LINE L2 3210 3312 -1 202 260 0 0 chr9 36249611 36249661 -81612966 + L2 LINE L2 3184 3233 -39 2401 88 3 3 chr9 36249812 36250117 -81612510 + AluSp SINE Alu 1 305 -8 219 326 156 39 chr9 36250229 36250476 -81612151 + L2 LINE L2 2899 3202 -111 1934 147 20 17 chr9 36250476 36250776 -81611851 + AluJb SINE Alu 1 301 -11 219 326 156 39 chr9 36250776 36250887 -81611740 + L2 LINE L2 3202 3299 -14 204 97 0 0 chr9 36251333 36251364 -81611263 + (CA)n Simple_repeat Simple_repeat 2 32 0 670 118 0 0 chr9 36251379 36251472 -81611155 - AluS SINE Alu -219 94 2 408 94 62 0 chr9 36251472 36251536 -81611091 + MSTB LTR MaLR 359 426 0 2890 209 63 20 chr9 36251538 36252367 -81610260 + L1MC4a LINE L1 6944 7807 -1 518 148 61 31 chr9 36252386 36252530 -81610097 + L1MA9 LINE L1 6158 6290 -1 309 283 85 9 chr9 36252713 36252819 -81609808 + MIR3 SINE MIR 95 208 0 2477 103 0 0 chr9 36252987 36253299 -81609328 - AluSx SINE Alu 0 312 1 2097 116 0 30 chr9 36254421 36254722 -81607905 - AluJo SINE Alu -20 292 1 2466 150 46 9 chr9 36254727 36255180 -81607447 - L1MB3 LINE L1 0 6183 5714 1284 154 50 141 chr9 36255841 36256238 -81606389 + MLT1A1 LTR MaLR 1 361 -4 219 327 6 93 chr9 36256360 36256522 -81606105 - L2 LINE L2 -20 3252 3105 290 262 12 60 chr9 36256591 36256675 -81605952 + L2 LINE L2 3193 3272 0 590 200 138 31 chr9 36256790 36256950 -81605677 + MER20 DNA MER1_type 40 216 -3 221 275 14 29 chr9 36257053 36257122 -81605505 - L2 LINE L2 0 3313 3246 1823 163 14 0 chr9 36257122 36257417 -81605210 - AluJo SINE Alu -13 299 1 2124 110 62 0 chr9 36257743 36258034 -81604593 + AluSp SINE Alu 1 309 -4 1173 130 25 0 chr9 36258827 36258989 -81603638 - AluSg/x SINE Alu -18 292 127 934 173 6 46 chr9 36259555 36259728 -81602899 + FRAM SINE Alu 1 166 0 266 242 45 15 chr9 36260589 36260655 -81601972 - L2 LINE L2 -6 3307 3240 301 324 97 14 chr9 36260923 36261068 -81601559 - MIR SINE MIR 0 262 106 263 276 19 67 chr9 36261175 36261280 -81601347 + MIR SINE MIR 68 167 -95 537 235 131 7 chr9 36261415 36261568 -81601059 + MIR SINE MIR 90 261 -1 21 0 0 0 chr9 36261717 36261738 -81600889 + AT_rich Low_complexity Low_complexity 1 21 0 1939 111 61 14 chr9 36262229 36262508 -81600119 + AluSg SINE Alu 2 293 -17 398 230 47 37 chr9 36263296 36263436 -81599191 - L1MC4 LINE L1 -1339 6703 6610 346 247 90 17 chr9 36263324 36263468 -81599159 + L1MCa LINE L1 1981 2110 -4316 * 2196 117 3 3 chr9 36263829 36264127 -81598500 + AluSx SINE Alu 1 298 -14 304 183 0 14 chr9 36264128 36264199 -81598428 + MER53 DNA DNA 120 189 0 2610 68 0 0 chr9 36264240 36264547 -81598080 + AluY SINE Alu 1 307 -4 2306 121 0 3 chr9 36265078 36265391 -81597236 + AluSq SINE Alu 1 312 -1 2026 129 7 24 chr9 36265735 36266064 -81596563 + AluSx SINE Alu 1 312 0 190 267 22 0 chr9 36266130 36266175 -81596452 - L3b LINE CR1 -8 1575 1530 1829 126 11 0 chr9 36266347 36266609 -81596018 + AluSx SINE Alu 23 287 -25 204 258 21 9 chr9 36266700 36266761 -81595866 - L3b LINE CR1 -7 1575 1511 1953 149 0 3 chr9 36266889 36267184 -81595443 - AluSx SINE Alu -18 294 1 216 0 0 0 chr9 36267350 36267374 -81595253 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2109 154 0 0 chr9 36267404 36267709 -81594918 - AluSx SINE Alu -7 305 1 1177 143 0 26 chr9 36267723 36267912 -81594715 + AluJo SINE Alu 120 303 -9 2319 68 3 10 chr9 36268583 36268875 -81593752 - AluSc SINE Alu -19 290 1 446 248 113 38 chr9 36269198 36269331 -81593296 - L2 LINE L2 -6 3307 3165 21 0 0 0 chr9 36269366 36269387 -81593240 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 36269994 36270015 -81592612 + AT_rich Low_complexity Low_complexity 1 21 0 816 81 0 0 chr9 36270334 36270699 -81591928 + AluSg SINE Alu 1 365 0 1491 192 3 31 chr9 36270719 36271037 -81591590 + AluJo SINE Alu 1 309 -3 1514 205 0 7 chr9 36271099 36271396 -81591231 + AluJb SINE Alu 1 295 -17 986 227 14 18 chr9 36271714 36271934 -81590693 - MER20 DNA MER1_type 0 219 1 2270 74 7 7 chr9 36272341 36272650 -81589977 + AluSc SINE Alu 1 309 0 2116 116 0 13 chr9 36273788 36274099 -81588528 + AluSg SINE Alu 1 307 -3 1985 130 3 0 chr9 36274365 36274657 -81587970 + AluSq SINE Alu 1 293 -20 823 121 0 16 chr9 36274728 36274852 -81587775 - FLAM_C SINE Alu -16 127 6 401 277 125 0 chr9 36275801 36275985 -81586642 - L1M4 LINE L1 -1890 4256 4050 44 46 0 0 chr9 36276024 36276089 -81586538 + AT_rich Low_complexity Low_complexity 1 65 0 1713 179 145 39 chr9 36276152 36276560 -81586067 - LTR32 LTR ERVL -7 464 14 295 213 64 85 chr9 36276653 36276687 -81585940 + L1ME LINE L1 5380 5413 -751 1922 141 3 0 chr9 36276687 36276984 -81585643 + AluSx SINE Alu 1 298 -14 295 213 64 85 chr9 36276984 36277090 -81585537 + L1ME LINE L1 5413 5517 -647 403 279 61 20 chr9 36277485 36277632 -81584995 - MIR SINE MIR -51 211 59 1496 177 45 10 chr9 36278625 36278913 -81583714 + AluJo SINE Alu 1 298 -14 5863 130 16 16 chr9 36279446 36280401 -81582226 - LTR5 LTR ERVK -14 955 1 24 32 0 0 chr9 36280789 36280820 -81581807 + AT_rich Low_complexity Low_complexity 1 31 0 298 296 15 12 chr9 36281152 36281307 -81581320 + L1M4 LINE L1 3767 3923 -2223 1460 160 31 35 chr9 36281372 36281659 -81580968 - AluJo SINE Alu -26 286 1 1879 153 3 6 chr9 36281732 36282045 -81580582 + AluSx SINE Alu 1 312 0 203 61 30 0 chr9 36282321 36282354 -81580273 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1768 125 84 0 chr9 36282476 36282763 -81579864 + AluSq SINE Alu 1 311 -2 1993 156 18 0 chr9 36282801 36283135 -81579492 - L1PB4 LINE L1 -2 6154 5815 259 189 27 0 chr9 36283139 36283213 -81579414 - L1PA16 LINE L1 -9 6156 6082 * 695 132 26 0 chr9 36283200 36283314 -81579313 - L1PB4 LINE L1 -327 5829 5713 399 158 44 70 chr9 36283322 36283436 -81579191 + L1PB4 LINE L1 5621 5731 -425 311 115 0 19 chr9 36283479 36283531 -81579096 + Alu SINE Alu 249 299 -2 1328 296 29 12 chr9 36283531 36284194 -81578433 + L1M4 LINE L1 3294 3967 -2179 593 239 72 61 chr9 36284191 36284305 -81578322 + L1MEc LINE L1 1905 2016 -4380 * 2309 84 0 0 chr9 36284305 36284603 -81578024 + AluY SINE Alu 1 298 -13 258 32 0 0 chr9 36284603 36284634 -81577993 + (TA)n Simple_repeat Simple_repeat 1 31 0 593 239 72 61 chr9 36284634 36284671 -81577956 + L1MEc LINE L1 2016 2051 -4345 2070 97 10 13 chr9 36284671 36284969 -81577658 - AluSx SINE Alu -15 297 1 593 239 72 61 chr9 36284969 36285175 -81577452 + L1MEc LINE L1 2051 2268 -4128 1288 192 7 46 chr9 36285187 36285468 -81577159 + AluJo SINE Alu 13 282 -30 604 286 70 36 chr9 36285471 36285827 -81576800 + L1MEc LINE L1 2211 2578 -3637 608 200 19 76 chr9 36285845 36286055 -81576572 + L1MEc LINE L1 2757 2954 -3261 3134 189 66 14 chr9 36286111 36286811 -81575816 - L1MB4 LINE L1 -40 6140 5405 2227 285 42 13 chr9 36286823 36287811 -81574816 - L1M4 LINE L1 -2647 3499 2483 571 190 121 46 chr9 36287797 36287971 -81574656 - L1MA9 LINE L1 0 6312 6126 * 437 306 162 46 chr9 36289905 36290337 -81572290 + L1M4 LINE L1 4791 5272 -874 27 29 0 0 chr9 36290370 36290404 -81572223 + AT_rich Low_complexity Low_complexity 1 34 0 1008 146 0 22 chr9 36292022 36292200 -81570427 - AluJb SINE Alu -1 311 138 270 336 23 0 chr9 36292218 36292349 -81570278 + (CCAA)n Simple_repeat Simple_repeat 3 136 0 225 275 214 64 chr9 36292349 36292375 -81570252 - L2 LINE L2 0 3272 3251 1846 140 0 20 chr9 36292375 36292675 -81569952 + AluSx SINE Alu 1 294 -18 225 275 214 64 chr9 36292675 36293190 -81569437 - L2 LINE L2 -21 3251 2246 443 275 136 53 chr9 36293233 36293562 -81569065 - L2 LINE L2 -74 3239 2867 1906 116 0 72 chr9 36293562 36293882 -81568745 + AluSx SINE Alu 1 297 -15 443 275 136 53 chr9 36293882 36293993 -81568634 - L2 LINE L2 -446 2867 2767 255 125 0 0 chr9 36294738 36294778 -81567849 + (CA)n Simple_repeat Simple_repeat 1 40 0 280 306 45 8 chr9 36295205 36295339 -81567288 - MIR3 SINE MIR -69 139 1 2037 102 14 7 chr9 36296789 36297082 -81565545 - AluSx SINE Alu -17 295 1 224 294 28 46 chr9 36297635 36297744 -81564883 - L2 LINE L2 -493 2821 2715 368 123 0 0 chr9 36298342 36298399 -81564228 - MER53 DNA DNA 0 189 133 459 0 0 0 chr9 36298480 36298531 -81564096 + (CA)n Simple_repeat Simple_repeat 2 52 0 2070 127 0 10 chr9 36298557 36298871 -81563756 + AluSx SINE Alu 1 311 -1 1386 143 0 0 chr9 36298874 36299090 -81563537 - AluSq SINE Alu -7 306 91 191 150 0 25 chr9 36400385 36400425 -81462202 - L2 LINE L2 -303 2969 2931 280 246 66 0 chr9 36400854 36400915 -81461712 - L2 LINE L2 -6 3266 3202 23 54 0 0 chr9 36401425 36401462 -81461165 + GC_rich Low_complexity Low_complexity 1 37 0 839 203 136 25 chr9 36403340 36403576 -81459051 + MIR SINE MIR 1 262 0 2095 134 0 13 chr9 36403808 36404106 -81458521 + AluJb SINE Alu 1 294 -18 2106 115 28 3 chr9 36404108 36404395 -81458232 + AluSx SINE Alu 1 294 -18 2436 87 0 0 chr9 36404397 36404696 -81457931 + AluSg SINE Alu 1 299 -11 1310 117 5 25 chr9 36404696 36404892 -81457735 + AluSg SINE Alu 1 192 -118 21 0 0 0 chr9 36405016 36405037 -81457590 + AT_rich Low_complexity Low_complexity 1 21 0 183 299 172 26 chr9 36405413 36405761 -81456866 + L2 LINE L2 1673 2071 -1243 * 417 277 191 11 chr9 36405747 36405942 -81456685 - MIR SINE MIR 0 262 35 2251 111 0 40 chr9 36406085 36406410 -81456217 - AluSx SINE Alu 0 312 1 729 267 93 0 chr9 36406419 36406719 -81455908 - L1ME4a LINE L1 -273 5848 5521 1487 161 0 21 chr9 36407851 36408087 -81454540 + AluSx SINE Alu 1 231 -81 401 164 0 0 chr9 36408188 36408243 -81454384 + AluSx SINE Alu 227 281 -30 234 0 0 0 chr9 36408248 36408274 -81454353 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 270 109 0 0 chr9 36408282 36408328 -81454299 + L1MB3 LINE L1 6131 6176 -7 1849 153 0 18 chr9 36409861 36410142 -81452485 + AluJb SINE Alu 1 276 -36 312 27 0 0 chr9 36410142 36410179 -81452448 + (TG)n Simple_repeat Simple_repeat 1 37 0 * 324 0 0 0 chr9 36410178 36410214 -81452413 + (GA)n Simple_repeat Simple_repeat 1 36 0 372 326 141 5 chr9 36410755 36410939 -81451688 - MIR SINE MIR -5 257 49 343 262 85 7 chr9 36410982 36411123 -81451504 + MARNA DNA Mariner 25 176 -410 560 342 66 57 chr9 36411360 36411423 -81451204 - L2 LINE L2 -17 3255 3194 1726 141 56 11 chr9 36411423 36411692 -81450935 + AluJb SINE Alu 1 281 -31 560 342 66 57 chr9 36411692 36412497 -81450130 - L2 LINE L2 -78 3194 2372 1847 155 17 3 chr9 36413352 36413642 -81448985 - AluJb SINE Alu -18 294 1 2039 94 4 0 chr9 36413769 36414062 -81448565 + AluSq SINE Alu 26 319 0 199 250 83 0 chr9 36415562 36415634 -81446993 + L2 LINE L2 2826 2903 -411 1356 122 19 42 chr9 36415725 36415938 -81446689 - AluJb SINE Alu -20 292 85 199 261 65 43 chr9 36417005 36417097 -81445530 - MIR SINE MIR -95 113 20 913 146 0 0 chr9 36418767 36418904 -81443723 + FLAM_C SINE Alu 5 141 -2 2266 73 0 0 chr9 36418911 36419183 -81443444 + AluY SINE Alu 40 311 0 940 191 19 0 chr9 36419196 36419386 -81443241 + AluJb SINE Alu 118 310 0 224 217 0 0 chr9 36419675 36419721 -81442906 + (CA)n Simple_repeat Simple_repeat 1 46 0 721 200 0 22 chr9 36419914 36420049 -81442578 + FLAM_A SINE Alu 1 132 -1 241 255 113 9 chr9 36420064 36420170 -81442457 - L1ME4a LINE L1 -16 6105 5989 467 249 132 7 chr9 36420242 36420404 -81442223 + MIR SINE MIR 2 193 -15 428 273 182 35 chr9 36420646 36421042 -81441585 + L2 LINE L2 1859 2312 -1002 736 206 0 0 chr9 36421192 36421318 -81441309 - FLAM_C SINE Alu -17 126 1 329 183 0 14 chr9 36421318 36421389 -81441238 - L1MD3 LINE L1 -17 7978 7909 984 135 45 19 chr9 36421389 36421627 -81441000 - L1MD3 LINE L1 -688 7104 6845 206 391 35 30 chr9 36421711 36421908 -81440719 + L2 LINE L2 2571 2768 -546 2822 32 0 0 chr9 36422241 36422551 -81440076 + AluY SINE Alu 1 310 -1 238 273 153 30 chr9 36422722 36422889 -81439738 - MIR SINE MIR -46 216 23 667 193 123 21 chr9 36423315 36423502 -81439125 - MIR SINE MIR 0 262 57 278 368 132 0 chr9 36424033 36424169 -81438458 - L2 LINE L2 0 3272 3119 265 335 111 6 chr9 36424218 36424557 -81438070 - L2 LINE L2 -274 2998 2557 218 254 88 79 chr9 36425738 36425852 -81436775 + MIR SINE MIR 68 182 -80 2616 144 49 26 chr9 36428008 36428502 -81434125 - MLT1D LTR MaLR 0 505 1 2339 157 18 32 chr9 36430136 36430576 -81432051 - Tigger2a DNA MER2_type 0 434 1 208 306 41 0 chr9 36431866 36431964 -81430663 + (CTCA)n Simple_repeat Simple_repeat 2 103 0 185 323 10 10 chr9 36432116 36432212 -81430415 - L2 LINE L2 -214 3058 2963 278 299 43 34 chr9 36432510 36432627 -81430000 - L2 LINE L2 -562 2752 2635 655 24 0 0 chr9 36432780 36432864 -81429763 + AluYb8 SINE Alu 235 318 0 223 327 28 9 chr9 36432889 36432996 -81429631 - L2 LINE L2 -982 2332 2224 434 260 79 0 chr9 36434525 36434652 -81427975 - MIR SINE MIR -5 257 121 194 234 0 21 chr9 36436278 36436325 -81426302 - L2 LINE L2 -222 3050 3005 181 300 0 0 chr9 36437993 36438033 -81424594 + MIR SINE MIR 221 260 -2 2064 137 6 16 chr9 36438033 36438348 -81424279 - AluSx SINE Alu 0 312 1 324 254 97 74 chr9 36438822 36439039 -81423588 - L2 LINE L2 -822 2492 2271 539 176 29 0 chr9 36440642 36440744 -81421883 - MIR SINE MIR -71 137 33 290 271 8 8 chr9 36443424 36443546 -81419081 + (TCTCTG)n Simple_repeat Simple_repeat 4 125 0 201 217 0 33 chr9 36443619 36443679 -81418948 + (TCTCTG)n Simple_repeat Simple_repeat 2 59 0 294 173 0 0 chr9 36444118 36444193 -81418434 + (CTCGG)n Simple_repeat Simple_repeat 5 79 0 296 274 126 15 chr9 36445022 36445157 -81417470 + L2 LINE L2 2150 2299 -1015 525 175 97 0 chr9 36445172 36445286 -81417341 + MIR SINE MIR 54 178 -84 213 329 160 31 chr9 36445652 36446002 -81416625 - L2 LINE L2 -514 2800 2406 316 277 10 0 chr9 36446010 36446111 -81416516 - L2 LINE L2 -1043 2271 2170 231 329 66 13 chr9 36446113 36446265 -81416362 - MLT1K LTR MaLR -48 540 381 195 69 0 0 chr9 36446414 36446443 -81416184 + (TCC)n Simple_repeat Simple_repeat 3 31 0 20392 47 5 2 chr9 36447570 36451023 -81411604 - L1PA5 LINE L1 -5 6149 2689 20032 67 6 11 chr9 36451322 36454038 -81408589 - L1PA5 LINE L1 -3433 2713 13 1984 139 30 3 chr9 36454040 36454341 -81408286 - AluSg SINE Alu -1 309 1 544 291 74 0 chr9 36454419 36454608 -81408019 - LTR67 LTR ERVL -2 555 353 703 258 68 95 chr9 36454801 36455201 -81407426 - MLT1I LTR MaLR 0 409 21 2130 118 7 3 chr9 36455976 36456295 -81406332 - AluSx SINE Alu 0 312 1 273 197 0 0 chr9 36456685 36456751 -81405876 + CT-rich Low_complexity Low_complexity 2 67 0 377 300 40 87 chr9 36457070 36457393 -81405234 - L2 LINE L2 -1188 2126 1819 1974 152 0 26 chr9 36457401 36457711 -81404916 + AluJo SINE Alu 1 302 -10 2423 55 41 7 chr9 36458042 36458335 -81404292 + AluY SINE Alu 1 303 -8 308 174 105 23 chr9 36458367 36458453 -81404174 + L1MC5 LINE L1 7611 7703 -258 24 0 0 0 chr9 36458555 36458579 -81404048 + AT_rich Low_complexity Low_complexity 1 24 0 281 238 95 40 chr9 36458580 36458706 -81403921 + L1MC5 LINE L1 7729 7861 -100 562 310 13 77 chr9 36460364 36460664 -81401963 + L2 LINE L2 2992 3272 0 183 362 24 31 chr9 36461343 36461470 -81401157 + MIR SINE MIR 51 176 -86 2321 112 7 0 chr9 36461521 36461817 -81400810 + AluSx SINE Alu 1 298 -14 732 289 125 42 chr9 36462244 36462645 -81399982 - L3 LINE CR1 -243 1334 901 444 328 114 22 chr9 36462916 36463187 -81399440 + L3 LINE CR1 931 1226 -351 1965 164 3 7 chr9 36463497 36463802 -81398825 - AluJo SINE Alu -8 304 1 386 313 20 35 chr9 36464046 36464244 -81398383 - MER117 DNA MER1_type -2 195 1 1547 93 4 4 chr9 36464516 36464741 -81397886 + L1PB2 LINE L1 5927 6151 0 1488 153 0 13 chr9 36464788 36465016 -81397611 + AluJb SINE Alu 1 225 -87 634 194 90 0 chr9 36465469 36465603 -81397024 + MER103 DNA DNA 2 147 -19 2100 126 14 3 chr9 36465766 36466060 -81396567 + AluJb SINE Alu 1 297 -15 2268 97 3 0 chr9 36466162 36466452 -81396175 - AluSg1 SINE Alu -18 291 1 208 359 119 9 chr9 36468129 36468449 -81394178 + L2 LINE L2 2411 2765 -549 2345 103 0 3 chr9 36469892 36470193 -81392434 + AluSc SINE Alu 1 300 -9 23 0 0 0 chr9 36470523 36470546 -81392081 + AT_rich Low_complexity Low_complexity 1 23 0 414 256 26 43 chr9 36470803 36470920 -81391707 + L2 LINE L2 3154 3268 -4 1412 154 5 5 chr9 36471202 36471422 -81391205 - AluJb SINE Alu -11 301 82 2213 133 0 0 chr9 36471647 36471947 -81390680 + AluSx SINE Alu 1 300 -12 889 121 23 30 chr9 36473261 36473393 -81389234 - AluJo SINE Alu -159 153 23 1919 169 3 10 chr9 36473414 36473728 -81388899 - AluSx SINE Alu 0 312 1 1731 230 88 63 chr9 36473736 36474989 -81387638 + L1MEc LINE L1 1841 3102 -3113 1938 141 9 52 chr9 36474993 36475319 -81387308 + AluJb SINE Alu 1 312 0 2029 121 7 7 chr9 36475338 36475627 -81387000 + AluSg SINE Alu 3 291 -19 346 151 9 85 chr9 36475628 36475734 -81386893 + L1MEc LINE L1 3918 4015 -2200 655 317 35 4 chr9 36476013 36476243 -81386384 - MIR SINE MIR -18 244 8 1847 183 3 0 chr9 36476469 36476764 -81385863 + AluJb SINE Alu 1 296 -16 366 495 53 18 chr9 36476931 36477042 -81385585 - L1MC4a LINE L1 -1910 5898 5792 871 73 78 92 chr9 36477042 36477123 -81385504 - L1MA8 LINE L1 -5 6286 6205 315 0 0 0 chr9 36477123 36477158 -81385469 + (TTA)n Simple_repeat Simple_repeat 2 36 0 2171 109 3 0 chr9 36477158 36477441 -81385186 - AluSx SINE Alu -28 284 1 871 73 78 92 chr9 36477441 36477538 -81385089 - L1MA8 LINE L1 -85 6206 6109 333 93 0 0 chr9 36477538 36477592 -81385035 + (TTGG)n Simple_repeat Simple_repeat 2 55 0 1750 172 3 11 chr9 36477592 36477877 -81384750 - AluJo SINE Alu -29 283 1 871 73 78 92 chr9 36477877 36477901 -81384726 - L1MA8 LINE L1 -180 6111 6084 366 495 53 18 chr9 36477901 36478010 -81384617 - L1MC4a LINE L1 -2016 5792 5688 2560 84 0 0 chr9 36478010 36478319 -81384308 - AluSg SINE Alu 0 310 2 366 495 53 18 chr9 36478319 36478477 -81384150 - L1MC4a LINE L1 -2120 5688 5506 265 206 15 73 chr9 36478503 36478571 -81384056 - L2 LINE L2 -5 3267 3204 765 243 4 98 chr9 36478993 36479248 -81383379 - MIR SINE MIR -9 253 23 24 0 0 0 chr9 36479280 36479304 -81383323 + AT_rich Low_complexity Low_complexity 1 24 0 339 338 45 0 chr9 36479524 36479657 -81382970 + MIR SINE MIR 119 257 -5 1426 170 0 12 chr9 36480461 36480702 -81381925 - AluJo SINE Alu -4 308 71 717 253 6 0 chr9 36480796 36480954 -81381673 + MIR SINE MIR 88 246 -16 189 0 0 0 chr9 36481358 36481379 -81381248 + (TC)n Simple_repeat Simple_repeat 2 22 0 216 0 0 0 chr9 36481379 36481403 -81381224 + (T)n Simple_repeat Simple_repeat 1 24 0 1700 132 0 0 chr9 36481405 36481640 -81380987 - AluSx SINE Alu -77 235 1 231 242 167 0 chr9 36481977 36482043 -81380584 - L2 LINE L2 -40 3232 3156 285 308 0 19 chr9 36482078 36482185 -81380442 + 7SK RNA RNA 3 107 -86 364 253 77 100 chr9 36483376 36483546 -81379081 - MIR3 SINE MIR -18 190 25 248 281 0 0 chr9 36483832 36483905 -81378722 + G-rich Low_complexity Low_complexity 1 73 0 1384 155 24 16 chr9 36483930 36484181 -81378446 + AluSg SINE Alu 41 293 -17 2166 94 10 14 chr9 36484183 36484471 -81378156 + AluSq SINE Alu 1 287 -26 6573 118 84 161 chr9 36484730 36486566 -81376061 - pTR5 LTR ERV1 0 2438 743 869 223 98 101 chr9 36486785 36487158 -81375469 - L1ME4a LINE L1 -56 6065 5693 2224 138 3 0 chr9 36487158 36487469 -81375158 + AluSx SINE Alu 1 312 0 869 223 98 101 chr9 36487469 36487777 -81374850 - L1ME4a LINE L1 -428 5693 5386 327 300 86 38 chr9 36489439 36489649 -81372978 - MIR SINE MIR -12 250 31 30 59 0 0 chr9 36489666 36489717 -81372910 + AT_rich Low_complexity Low_complexity 1 51 0 2791 164 20 2 chr9 36489831 36490325 -81372302 - L1MB8 LINE L1 0 6178 5676 2450 66 0 10 chr9 36490408 36490709 -81371918 - AluY SINE Alu -13 298 1 718 295 60 13 chr9 36491319 36491553 -81371074 - MIR SINE MIR -10 252 8 387 268 24 24 chr9 36491863 36491986 -81370641 + L2 LINE L2 3190 3312 -1 331 319 35 43 chr9 36491992 36492133 -81370494 + MIR3 SINE MIR 46 185 -23 2265 96 0 14 chr9 36492791 36493084 -81369543 + AluSc SINE Alu 1 289 -20 376 341 60 11 chr9 36495227 36495409 -81367218 + MIR SINE MIR 22 212 -50 378 0 0 0 chr9 36495717 36495759 -81366868 + (TA)n Simple_repeat Simple_repeat 2 43 0 1958 147 0 3 chr9 36495759 36496044 -81366583 - AluJb SINE Alu -28 284 1 245 280 97 11 chr9 36498421 36498514 -81364113 + L3 LINE CR1 969 1069 -508 500 259 184 33 chr9 36498582 36498794 -81363833 + MIR SINE MIR 19 262 0 269 294 117 12 chr9 36498810 36498973 -81363654 + L3 LINE CR1 1184 1363 -214 575 299 23 32 chr9 36499274 36499491 -81363136 - MIR SINE MIR -36 226 12 310 263 40 72 chr9 36499764 36499916 -81362711 + MIR3 SINE MIR 30 176 -32 255 262 217 51 chr9 36500663 36500838 -81361789 - MIR3 SINE MIR -59 203 13 822 268 28 40 chr9 36501426 36501676 -81360951 - MIR SINE MIR -8 254 8 217 296 9 0 chr9 36502514 36502622 -81360005 + (CA)n Simple_repeat Simple_repeat 1 109 0 21 0 0 0 chr9 36503750 36503771 -81358856 + AT_rich Low_complexity Low_complexity 1 21 0 371 259 35 12 chr9 36504238 36504323 -81358304 - MIR3 SINE MIR -50 158 72 296 241 0 0 chr9 36504374 36504432 -81358195 - L2 LINE L2 -6 3307 3250 1670 204 124 18 chr9 36504436 36504902 -81357725 + L1ME3 LINE L1 5480 5996 -166 1336 177 99 31 chr9 36504914 36505236 -81357391 + MER2 DNA MER2_type 1 344 0 2313 77 0 21 chr9 36505264 36505570 -81357057 + AluY SINE Alu 1 300 0 565 304 68 52 chr9 36505845 36506227 -81356400 + L2 LINE L2 2924 3311 -2 694 346 47 7 chr9 36506320 36506618 -81356009 - L2 LINE L2 -1184 2130 1821 335 291 31 8 chr9 36506634 36506761 -81355866 - L2 LINE L2 -1608 1706 1577 304 325 106 0 chr9 36507425 36507548 -81355079 + L2 LINE L2 3137 3272 0 200 219 0 0 chr9 36507548 36507589 -81355038 + (TGAA)n Simple_repeat Simple_repeat 3 43 0 599 227 17 8 chr9 36507978 36508097 -81354530 + L2 LINE L2 3190 3309 -4 403 314 32 0 chr9 36508351 36508475 -81354152 - L2 LINE L2 0 3272 3145 191 337 44 72 chr9 36508607 36508856 -81353771 - L2 LINE L2 -356 2958 2717 184 274 32 32 chr9 36509014 36509076 -81353551 + L2 LINE L2 3159 3220 -93 763 216 39 43 chr9 36509391 36509623 -81353004 + L1ME1 LINE L1 5930 6160 -6 2199 107 13 10 chr9 36509648 36509779 -81352848 + AluSq SINE Alu 5 134 -179 2344 71 0 14 chr9 36509779 36510095 -81352532 + AluY SINE Alu 1 311 0 2199 107 13 10 chr9 36510095 36510271 -81352356 + AluSq SINE Alu 134 313 0 1961 167 0 0 chr9 36511175 36511487 -81351140 + AluSx SINE Alu 1 312 0 201 214 0 0 chr9 36513030 36513072 -81349555 + L2 LINE L2 3263 3304 -9 610 231 99 28 chr9 36513428 36513610 -81349017 + MIR SINE MIR 50 244 -18 202 290 52 32 chr9 36513615 36513770 -81348857 + (TCTCTG)n Simple_repeat Simple_repeat 4 161 0 240 184 40 13 chr9 36514242 36514318 -81348309 + (TCTCTG)n Simple_repeat Simple_repeat 1 78 0 321 258 5 43 chr9 36515131 36515317 -81347310 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 385 323 6 0 chr9 36515377 36515535 -81347092 + GA-rich Low_complexity Low_complexity 2 160 0 425 281 112 36 chr9 36516410 36516688 -81345939 + L2 LINE L2 2606 2904 -410 2305 91 3 3 chr9 36516885 36517182 -81345445 - AluSx SINE Alu -15 297 1 182 255 0 0 chr9 36517563 36517610 -81345017 - L2 LINE L2 -308 2964 2918 2404 93 6 3 chr9 36517729 36518041 -81344586 + AluSp SINE Alu 1 313 0 1116 238 75 39 chr9 36518192 36518553 -81344074 - L2 LINE L2 0 3313 2940 1652 198 51 70 chr9 36519005 36519475 -81343152 + MLT1C LTR MaLR 2 462 -5 861 307 132 35 chr9 36519502 36520221 -81342406 + L2 LINE L2 905 1714 -1600 195 69 0 0 chr9 36520221 36520250 -81342377 + (CAA)n Simple_repeat Simple_repeat 2 30 0 861 307 132 35 chr9 36520250 36520350 -81342277 + L2 LINE L2 1714 1803 -1511 2407 69 3 0 chr9 36521512 36521801 -81340826 + AluSp SINE Alu 1 290 -23 533 175 19 0 chr9 36528380 36528483 -81334144 + MER81 DNA DNA 2 106 -8 255 213 16 47 chr9 36529325 36529452 -81333175 + (CAGAGA)n Simple_repeat Simple_repeat 3 125 0 319 253 65 65 chr9 36529550 36529683 -81332944 + L1M2 LINE L1 1762 1897 -4952 2301 87 7 0 chr9 36529683 36529992 -81332635 + AluSx SINE Alu 1 311 -1 319 253 65 65 chr9 36529992 36530012 -81332615 + L1M2 LINE L1 1896 1915 -4934 22 35 0 0 chr9 36532914 36532943 -81329684 + GC_rich Low_complexity Low_complexity 1 29 0 733 303 65 16 chr9 36535306 36535629 -81326998 + L2 LINE L2 2018 2356 -958 945 264 90 42 chr9 36535668 36536069 -81326558 + LTR16C LTR ERVL 72 491 0 252 264 178 54 chr9 36536105 36536381 -81326246 + L2 LINE L2 2425 2734 -580 290 313 17 28 chr9 36537898 36538074 -81324553 + GA-rich Low_complexity Low_complexity 5 178 0 283 260 0 0 chr9 36539189 36539289 -81323338 + (CAGA)n Simple_repeat Simple_repeat 1 100 0 298 265 31 20 chr9 36539683 36539781 -81322846 - MIR SINE MIR -139 123 25 258 32 0 0 chr9 36540116 36540147 -81322480 + (CA)n Simple_repeat Simple_repeat 1 31 0 218 264 35 40 chr9 36540334 36540508 -81322119 + GA-rich Low_complexity Low_complexity 2 174 0 226 208 13 65 chr9 36542427 36542504 -81320123 + (CAGAGA)n Simple_repeat Simple_repeat 2 74 0 240 111 0 0 chr9 36544217 36544262 -81318365 + (CCCA)n Simple_repeat Simple_repeat 3 47 0 202 71 24 24 chr9 36546481 36546523 -81316104 + (CGGG)n Simple_repeat Simple_repeat 3 44 0 23 54 0 0 chr9 36546712 36546749 -81315878 + GC_rich Low_complexity Low_complexity 1 37 0 198 143 0 0 chr9 36546822 36546857 -81315770 + (CGAG)n Simple_repeat Simple_repeat 4 38 0 229 268 13 36 chr9 36547960 36548177 -81314450 + GA-rich Low_complexity Low_complexity 1 211 0 241 284 30 0 chr9 36548565 36548632 -81313995 - L3b LINE CR1 -191 1392 1324 743 309 45 4 chr9 36550162 36550405 -81312222 - MIR SINE MIR -1 261 9 451 256 24 72 chr9 36550447 36550551 -81312076 - MIR SINE MIR 0 262 155 1904 157 0 10 chr9 36550551 36550857 -81311770 + AluSx SINE Alu 1 303 -9 451 256 24 72 chr9 36550857 36551026 -81311601 - MIR SINE MIR -107 155 7 243 61 0 0 chr9 36552488 36552521 -81310106 + (CCG)n Simple_repeat Simple_repeat 2 34 0 183 139 0 0 chr9 36552570 36552606 -81310021 + (TCCC)n Simple_repeat Simple_repeat 3 38 0 23 33 0 0 chr9 36552616 36552646 -81309981 + GC_rich Low_complexity Low_complexity 1 30 0 28 79 0 0 chr9 36552674 36552737 -81309890 + GC_rich Low_complexity Low_complexity 1 63 0 192 40 0 0 chr9 36552971 36552996 -81309631 + (CA)n Simple_repeat Simple_repeat 1 25 0 358 318 125 5 chr9 36557102 36557294 -81305333 + MIR SINE MIR 14 228 -34 366 265 245 20 chr9 36557926 36558122 -81304505 + MIR SINE MIR 2 241 -21 4767 121 109 96 chr9 36558124 36559661 -81302966 + pTR5 LTR ERV1 145 2438 0 1224 259 109 57 chr9 36560094 36560386 -81302241 + HAL1b LINE L1 70 345 -1003 855 150 0 8 chr9 36560386 36560519 -81302108 + FLAM_C SINE Alu 1 132 -1 1224 259 109 57 chr9 36560519 36560946 -81301681 + HAL1b LINE L1 345 773 -575 385 123 0 0 chr9 36560947 36561004 -81301623 + Tigger2 DNA MER2_type 1 57 -2661 2007 85 88 20 chr9 36561018 36561372 -81301255 + Tigger2 DNA MER2_type 2280 2657 -61 517 253 91 77 chr9 36561384 36561500 -81301127 + HAL1b LINE L1 827 940 -408 2055 136 7 0 chr9 36561500 36561810 -81300817 - AluJb SINE Alu 0 312 1 517 253 91 77 chr9 36561810 36561970 -81300657 + HAL1b LINE L1 940 1096 -252 2489 55 0 3 chr9 36561970 36562277 -81300350 - AluY SINE Alu -5 306 1 517 253 91 77 chr9 36562277 36562506 -81300121 + HAL1b LINE L1 1096 1340 -8 223 279 0 38 chr9 36562508 36562587 -81300040 + MIR SINE MIR 77 152 -110 1782 146 82 31 chr9 36562634 36563058 -81299569 + MLT1D LTR MaLR 2 447 -58 1176 92 69 0 chr9 36563060 36563233 -81299394 - AluSg/x SINE Alu -4 308 124 306 102 0 0 chr9 36563234 36563283 -81299344 + MLT1D LTR MaLR 454 502 -3 230 317 106 40 chr9 36563284 36563511 -81299116 + L2 LINE L2 2935 3176 -96 195 42 0 0 chr9 36563817 36563841 -81298786 + (TG)n Simple_repeat Simple_repeat 1 24 0 319 314 12 12 chr9 36563894 36564066 -81298561 + (TG)n Simple_repeat Simple_repeat 1 172 0 1145 112 0 41 chr9 36564683 36564826 -81297801 - AluJ SINE Alu -17 295 158 3839 94 28 20 chr9 36564826 36565370 -81297257 + LTR14 LTR ERVK 1 548 0 1145 112 0 41 chr9 36565370 36565395 -81297232 - AluJ SINE Alu -154 158 134 928 113 0 23 chr9 36565395 36565528 -81297099 - AluJ SINE Alu -172 130 1 362 176 0 0 chr9 36565528 36565596 -81297031 - L1MB3 LINE L1 -39 6144 6077 555 280 74 33 chr9 36566382 36566465 -81296162 + MIR SINE MIR 8 86 -176 1987 131 13 3 chr9 36566465 36566770 -81295857 - AluSx SINE Alu -4 308 1 555 280 74 33 chr9 36566770 36566849 -81295778 + MIR SINE MIR 86 160 -102 1870 146 30 0 chr9 36566849 36567150 -81295477 - AluJb SINE Alu -2 310 1 555 280 74 33 chr9 36567150 36567229 -81295398 + MIR SINE MIR 160 260 -2 190 308 108 0 chr9 36567260 36567325 -81295302 - L2 LINE L2 -1030 2284 2213 759 113 9 0 chr9 36567330 36567436 -81295191 + AluSq/x SINE Alu 1 107 -206 1802 171 3 19 chr9 36619577 36619887 -81242740 - AluJb SINE Alu -7 305 1 2889 195 76 48 chr9 36619893 36619904 -81242723 - L1M4c LINE L1 -4116 2530 2521 918 145 0 0 chr9 36619904 36620035 -81242592 - FLAM_C SINE Alu -2 131 1 2889 195 76 48 chr9 36620035 36620356 -81242271 - L1M4c LINE L1 -4125 2521 2210 1915 142 48 0 chr9 36620356 36620645 -81241982 - AluJo SINE Alu -8 304 2 2889 195 76 48 chr9 36620645 36620656 -81241971 - L1M4c LINE L1 -4436 2210 2201 2314 113 0 0 chr9 36620656 36620956 -81241671 - AluSx SINE Alu -12 300 1 2889 195 76 48 chr9 36620956 36621056 -81241571 - L1M4c LINE L1 -4445 2201 2105 207 0 0 0 chr9 36621056 36621079 -81241548 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2889 195 76 48 chr9 36621079 36621854 -81240773 - L1M4c LINE L1 -4541 2105 1185 1067 217 31 25 chr9 36621977 36622299 -81240328 - L1M4c LINE L1 -5339 1203 880 246 314 113 44 chr9 36622453 36622746 -81239881 - L1M4c LINE L1 -6040 606 294 365 315 62 22 chr9 36623552 36623730 -81238897 - MER5A DNA MER1_type -3 186 2 183 80 0 0 chr9 36625363 36625388 -81237239 + (TTAGGG)n Simple_repeat Simple_repeat 4 28 0 1689 163 0 63 chr9 36625643 36626022 -81236605 - AluJb SINE Alu 0 312 1 216 183 0 67 chr9 36626335 36626395 -81236232 + (TTGGGG)n Simple_repeat Simple_repeat 5 60 0 2115 130 0 23 chr9 36628145 36628452 -81234175 - AluSx SINE Alu -12 300 1 2644 21 0 3 chr9 36629276 36629590 -81233037 + AluYb8 SINE Alu 1 313 0 1649 286 87 28 chr9 36630190 36630513 -81232114 + L2 LINE L2 1479 1781 -1533 306 0 0 0 chr9 36630513 36630547 -81232080 + (TC)n Simple_repeat Simple_repeat 1 34 0 2154 108 14 0 chr9 36630547 36630824 -81231803 - AluSq SINE Alu -32 281 1 1649 286 87 28 chr9 36630824 36631187 -81231440 + L2 LINE L2 1780 2207 -1107 651 263 147 71 chr9 36631233 36631614 -81231013 - L2 LINE L2 -616 2698 2289 303 298 114 9 chr9 36631627 36631741 -81230886 + L2 LINE L2 3138 3263 -9 200 278 69 28 chr9 36631880 36631952 -81230675 - L2 LINE L2 -8 3305 3231 261 296 93 43 chr9 36637362 36637501 -81225126 - MIR SINE MIR -60 202 60 237 215 65 86 chr9 36639368 36639461 -81223166 + MER102b DNA MER1_type 234 324 -17 6752 96 13 42 chr9 36640249 36640959 -81221668 - L1MA3 LINE L1 0 6305 5646 1897 138 3 46 chr9 36640959 36641263 -81221364 - AluJb SINE Alu -8 304 14 6752 96 13 42 chr9 36641263 36641844 -81220783 - L1MA3 LINE L1 -659 5646 5050 587 325 72 11 chr9 36641983 36642359 -81220268 - L1MC/D LINE L1 -1987 5821 5423 1658 177 3 17 chr9 36642618 36642917 -81219710 - AluJo SINE Alu -17 295 1 941 300 55 39 chr9 36643179 36643686 -81218941 + L1MCc LINE L1 73 587 -5836 1279 210 207 7 chr9 36643832 36644237 -81218390 + L1MCc LINE L1 827 1312 -5111 2495 90 0 3 chr9 36644238 36644549 -81218078 - AluSg SINE Alu 0 310 1 244 161 0 36 chr9 36644723 36644779 -81217848 + Alu SINE Alu 248 301 0 1692 256 45 67 chr9 36644779 36645276 -81217351 + L1MCc LINE L1 1380 1853 -5088 1917 156 10 3 chr9 36645276 36645565 -81217062 - AluJb SINE Alu -21 291 1 1692 256 45 67 chr9 36645565 36645904 -81216723 + L1MCc LINE L1 1853 2198 -4743 3437 167 18 14 chr9 36645982 36646640 -81215987 - L1MB5 LINE L1 0 6174 5514 727 260 144 63 chr9 36646715 36647257 -81215370 + MLT1G1 LTR MaLR 1 586 -9 2342 99 13 0 chr9 36647300 36647604 -81215023 - AluY SINE Alu -3 308 1 461 282 19 72 chr9 36647618 36647880 -81214747 + MLT1L LTR MaLR 193 440 -175 820 272 61 3 chr9 36648123 36648436 -81214191 + L1MC4a LINE L1 5385 5715 -2093 4176 108 175 111 chr9 36648436 36649673 -81212954 - pTR5 LTR ERV1 -2 2436 829 428 217 89 2 chr9 36649673 36649811 -81212816 + L1MC4a LINE L1 5707 5824 -297 2295 126 0 0 chr9 36649835 36650144 -81212483 - AluSq SINE Alu -4 309 1 230 176 0 0 chr9 36650207 36650241 -81212386 - MLT1F LTR MaLR -506 36 3 2502 90 3 0 chr9 36650310 36650620 -81212007 - AluSp SINE Alu -2 311 1 21 0 0 0 chr9 36651534 36651555 -81211072 + AT_rich Low_complexity Low_complexity 1 21 0 840 144 0 0 chr9 36651555 36651687 -81210940 - FLAM_C SINE Alu 0 133 2 764 156 64 0 chr9 36651846 36651987 -81210640 + MER58A DNA MER1_type 43 192 -32 1812 201 47 13 chr9 36652724 36653107 -81209520 - MSTD LTR MaLR 0 396 1 444 111 0 0 chr9 36654462 36654525 -81208102 + MER41A LTR ERV1 492 554 0 275 265 235 0 chr9 36655101 36655203 -81207424 + MIR3 SINE MIR 43 168 -40 1935 117 8 0 chr9 36655228 36655494 -81207133 + AluSx SINE Alu 31 298 -14 2205 98 3 35 chr9 36655657 36655972 -81206655 - AluSc SINE Alu -4 305 1 224 170 19 0 chr9 36656038 36656091 -81206536 + GA-rich Low_complexity Low_complexity 1 54 0 387 229 68 42 chr9 36656258 36656376 -81206251 + L2 LINE L2 3191 3311 -2 415 256 39 64 chr9 36658505 36658661 -81203966 - L2 LINE L2 -633 2681 2530 1928 150 13 20 chr9 36659969 36660269 -81202358 + AluJo SINE Alu 1 298 -14 685 161 140 0 chr9 36661669 36661812 -81200815 - MER5B DNA MER1_type -15 163 1 241 217 24 36 chr9 36662118 36662201 -81200426 + G-rich Low_complexity Low_complexity 6 87 0 269 315 7 0 chr9 36663175 36663318 -81199309 + (TG)n Simple_repeat Simple_repeat 1 144 0 213 94 0 0 chr9 36664390 36664422 -81198205 + (TCCCC)n Simple_repeat Simple_repeat 1 32 0 261 57 0 0 chr9 36664953 36664988 -81197639 + (TG)n Simple_repeat Simple_repeat 1 35 0 1216 295 45 19 chr9 36665791 36666005 -81196622 - L2 LINE L2 -8 3305 3098 2227 91 30 14 chr9 36666005 36666301 -81196326 - AluSx SINE Alu -11 301 1 1216 295 45 19 chr9 36666301 36666667 -81195960 - L2 LINE L2 -215 3098 2703 1891 166 3 16 chr9 36667998 36668312 -81194315 - AluJo SINE Alu -2 310 1 2348 93 0 0 chr9 36668902 36669193 -81193434 - AluSg SINE Alu -19 291 1 418 284 226 24 chr9 36669344 36669552 -81193075 - MIR SINE MIR -1 261 12 229 268 0 18 chr9 36672177 36672233 -81190394 + (TTGGGG)n Simple_repeat Simple_repeat 1 55 0 222 91 0 0 chr9 36675355 36675388 -81187239 + (CGGGG)n Simple_repeat Simple_repeat 1 33 0 454 182 11 11 chr9 36676546 36676634 -81185993 - L2 LINE L2 0 3272 3185 2371 65 0 0 chr9 36676636 36676936 -81185691 + AluSg1 SINE Alu 1 300 0 4656 83 4 82 chr9 36678536 36679256 -81183371 + MER4A LTR ERV1 1 664 0 1641 251 72 81 chr9 36679718 36680410 -81182217 + MER21B LTR ERV1 29 714 -149 2140 177 112 16 chr9 36681234 36681664 -81180963 - MER70A LTR ERVL 0 472 2 423 0 0 0 chr9 36681778 36681825 -81180802 + (TCCA)n Simple_repeat Simple_repeat 4 50 0 213 295 25 25 chr9 36681846 36681968 -81180659 + (TTCA)n Simple_repeat Simple_repeat 3 124 0 275 216 193 11 chr9 36681984 36682072 -81180555 - MIR SINE MIR -2 260 157 262 343 66 40 chr9 36682199 36682397 -81180230 + MLT1K LTR MaLR 172 374 -214 2283 135 71 6 chr9 36682397 36682761 -81179866 - MSTC LTR MaLR 0 428 41 915 156 0 54 chr9 36682761 36682947 -81179680 - FRAM SINE Alu 0 176 1 438 57 0 0 chr9 36682949 36683002 -81179625 - MSTC LTR MaLR -375 53 1 1838 148 7 0 chr9 36683048 36683338 -81179289 + AluSx SINE Alu 5 296 -16 351 263 12 81 chr9 36683363 36683429 -81179198 + MLT1K LTR MaLR 436 505 -83 1411 189 40 3 chr9 36683429 36683594 -81179033 - AluSx SINE Alu 0 312 130 2351 74 0 0 chr9 36683594 36683891 -81178736 - AluY SINE Alu -14 297 1 1411 189 40 3 chr9 36683891 36684026 -81178601 - AluSx SINE Alu -182 130 1 351 263 12 81 chr9 36684026 36684119 -81178508 + MLT1K LTR MaLR 505 584 -4 377 252 69 30 chr9 36684128 36684272 -81178355 - MIR SINE MIR -62 146 7 1337 179 14 0 chr9 36684382 36684600 -81178027 - MER58A DNA MER1_type 0 224 4 209 250 0 0 chr9 36684713 36684773 -81177854 + (TG)n Simple_repeat Simple_repeat 2 61 0 1779 139 33 3 chr9 36684825 36685127 -81177500 - AluJb SINE Alu 0 312 2 320 241 209 37 chr9 36685820 36686007 -81176620 - L2 LINE L2 -213 3059 2841 1840 130 4 0 chr9 36686212 36686489 -81176138 + AluJb SINE Alu 1 278 -34 1085 283 88 58 chr9 36686509 36686582 -81176045 + L2 LINE L2 2254 2323 -991 2552 166 17 0 chr9 36686582 36687003 -81175624 - MSTA LTR MaLR 0 428 1 1085 283 88 58 chr9 36687003 36687360 -81175267 + L2 LINE L2 2323 2711 -603 2418 62 0 7 chr9 36687360 36687668 -81174959 - AluY SINE Alu -5 306 1 1085 283 88 58 chr9 36687668 36687859 -81174768 + L2 LINE L2 2711 2895 -419 3126 50 20 88 chr9 36687889 36688302 -81174325 + MLT2A1 LTR ERVL 3 442 -2 2007 104 24 7 chr9 36688302 36688599 -81174028 - AluSq SINE Alu -11 302 1 2144 110 3 0 chr9 36688600 36688900 -81173727 - AluSx SINE Alu -11 301 1 3126 50 20 88 chr9 36688900 36688941 -81173686 + MLT2A1 LTR ERVL 386 428 -16 520 267 144 7 chr9 36688990 36689136 -81173491 + LTR67 LTR ERVL 96 261 -296 335 228 13 0 chr9 36689156 36689235 -81173392 + HERVL LTR ERVL 3122 3201 -2453 429 361 23 0 chr9 36689235 36689454 -81173173 + HERVL LTR ERVL 3513 3736 -1918 1858 72 0 0 chr9 36689455 36689690 -81172937 + AluSc SINE Alu 51 285 -24 838 193 81 0 chr9 36689690 36689851 -81172776 + MLT1E1 LTR MaLR 339 512 -142 25 0 0 0 chr9 36689855 36689880 -81172747 + AT_rich Low_complexity Low_complexity 1 25 0 847 217 0 0 chr9 36689906 36690063 -81172564 + MLT1E1 LTR MaLR 498 654 0 2192 104 3 0 chr9 36690064 36690371 -81172256 + AluSx SINE Alu 1 308 -4 2675 26 0 0 chr9 36690377 36690688 -81171939 + AluYa5 SINE Alu 1 311 0 718 276 39 78 chr9 36690947 36691280 -81171347 + MLT1I LTR MaLR 87 406 -3 561 130 104 9 chr9 36691391 36691499 -81171128 + MLT1A2 LTR MaLR 1 122 -268 2234 113 0 0 chr9 36691499 36691810 -81170817 + AluSx SINE Alu 1 311 -1 723 108 14 95 chr9 36692351 36692381 -81170246 + MLT1A2 LTR MaLR 237 268 -106 1465 146 51 61 chr9 36692381 36692675 -81169952 - AluJb SINE Alu -21 291 1 723 108 14 95 chr9 36692675 36692792 -81169835 + MLT1A2 LTR MaLR 268 372 -2 515 287 99 63 chr9 36693081 36693303 -81169324 + LTR67 LTR ERVL 87 316 -241 2473 306 19 24 chr9 36693303 36693445 -81169182 - MER115 DNA AcHobo 0 693 552 2316 106 0 0 chr9 36693445 36693756 -81168871 - AluSx SINE Alu -1 311 1 2473 306 19 24 chr9 36693756 36694310 -81168317 - MER115 DNA AcHobo -141 552 1 443 215 99 35 chr9 36694351 36694523 -81168104 + LTR67 LTR ERVL 367 549 -8 446 306 16 8 chr9 36694531 36694655 -81167972 + L2 LINE L2 3163 3287 -26 235 200 73 0 chr9 36694800 36694855 -81167772 - MER91C DNA MER1_type -50 90 32 526 324 78 0 chr9 36695990 36696194 -81166433 + MIR SINE MIR 37 256 -6 632 271 26 7 chr9 36696284 36696439 -81166188 + MIR SINE MIR 4 161 -101 366 225 43 103 chr9 36697791 36697956 -81164671 - MIR3 SINE MIR -28 180 21 235 243 16 0 chr9 36698244 36698378 -81164249 + (TGGA)n Simple_repeat Simple_repeat 1 136 0 684 297 125 30 chr9 36699187 36699490 -81163137 - L2 LINE L2 0 3272 2941 572 51 64 0 chr9 36699903 36699981 -81162646 - HY3 scRNA scRNA -1 100 18 405 0 0 0 chr9 36700820 36700865 -81161762 + (TG)n Simple_repeat Simple_repeat 2 46 0 653 265 87 55 chr9 36702652 36702905 -81159722 - MIR SINE MIR 0 262 2 568 310 86 1 chr9 36702939 36703156 -81159471 + MIR SINE MIR 8 241 -21 1989 129 0 43 chr9 36703170 36703496 -81159131 - AluSx SINE Alu 0 312 1 285 309 0 0 chr9 36703497 36703578 -81159049 + (TCCA)n Simple_repeat Simple_repeat 4 84 0 799 244 68 8 chr9 36703582 36703816 -81158811 + LTR33 LTR ERVL 2 249 -272 863 265 5 0 chr9 36703820 36704005 -81158622 + MER5A DNA MER1_type 1 186 -3 484 209 93 7 chr9 36704016 36704155 -81158472 + L1M4c LINE L1 1230 1380 -5004 343 250 0 10 chr9 36704169 36704273 -81158354 - L1M4c LINE L1 -4563 1821 1719 265 239 30 0 chr9 36704296 36704363 -81158264 - L1M4c LINE L1 -4648 1736 1668 275 73 0 5 chr9 36704363 36704453 -81158174 + AluSg/x SINE Alu 70 195 -105 1890 129 0 14 chr9 36704555 36704732 -81157895 - AluSx SINE Alu -2 310 137 2248 88 0 7 chr9 36704732 36705028 -81157599 - AluSq SINE Alu -19 294 1 1890 129 0 14 chr9 36705028 36705144 -81157483 - AluSx SINE Alu -175 137 21 528 259 25 12 chr9 36705153 36705315 -81157312 + LTR33 LTR ERVL 323 486 -35 4435 167 18 62 chr9 36705316 36706196 -81156431 + MER21B LTR ERV1 1 841 -22 283 159 0 0 chr9 36706215 36706259 -81156368 + LTR33 LTR ERVL 478 521 0 2090 119 3 0 chr9 36706601 36706903 -81155724 + AluSx SINE Alu 1 303 -9 365 310 35 35 chr9 36707045 36707190 -81155437 + ERVL LTR ERVL 542 686 -4968 345 173 156 150 chr9 36707609 36707722 -81154905 - MER5A DNA MER1_type -6 183 67 2199 102 0 0 chr9 36707722 36708015 -81154612 - AluSx SINE Alu -19 293 1 345 173 156 150 chr9 36708015 36708074 -81154553 - MER5A DNA MER1_type -122 67 10 824 336 80 21 chr9 36708078 36708682 -81153945 + ERVL LTR ERVL 1217 1905 -3851 1831 115 62 3 chr9 36708887 36709175 -81153452 - AluSp SINE Alu -8 305 1 819 280 129 19 chr9 36709195 36709566 -81153061 + ERVL LTR ERVL 3097 3508 -2146 787 251 35 0 chr9 36709660 36709863 -81152764 + ERVL LTR ERVL 3684 3893 -1871 486 226 0 10 chr9 36709873 36709975 -81152652 + LTR33 LTR ERVL 421 521 0 2593 222 142 10 chr9 36710114 36711220 -81151407 - L2 LINE L2 -3 3310 2078 900 198 0 0 chr9 36713038 36713215 -81149412 + AluJo SINE Alu 116 292 -20 2094 101 21 0 chr9 36713576 36713864 -81148763 - AluSx SINE Alu -18 294 1 500 75 0 0 chr9 36714050 36714117 -81148510 + MER41B LTR ERV1 481 547 -88 827 197 21 94 chr9 36714178 36714412 -81148215 - AluJb SINE Alu -94 218 2 1473 174 34 27 chr9 36714432 36714725 -81147902 - AluJo SINE Alu -6 296 2 195 42 0 0 chr9 36714874 36714898 -81147729 + (TG)n Simple_repeat Simple_repeat 2 25 0 1994 135 3 6 chr9 36714947 36715259 -81147368 + AluJo SINE Alu 1 311 -1 22 0 0 0 chr9 36715697 36715719 -81146908 + AT_rich Low_complexity Low_complexity 1 22 0 1305 156 156 12 chr9 36715719 36715976 -81146651 - AluJb SINE Alu -8 294 1 270 314 47 0 chr9 36716009 36716095 -81146532 - HAL1 LINE L1 -2417 90 1 785 144 0 0 chr9 36716177 36716295 -81146332 + FLAM_C SINE Alu 1 118 -15 21 36 0 0 chr9 36716295 36716323 -81146304 + AT_rich Low_complexity Low_complexity 1 28 0 325 264 118 18 chr9 36716441 36716551 -81146076 + HAL1 LINE L1 2027 2147 -360 474 228 137 25 chr9 36716586 36716827 -81145800 + HAL1 LINE L1 2118 2385 -122 837 158 57 0 chr9 36717235 36717393 -81145234 + FRAM SINE Alu 1 160 -16 2209 76 7 13 chr9 36718123 36718425 -81144202 - AluSq SINE Alu -13 300 1 307 314 50 25 chr9 36718798 36718919 -81143708 + L1ME3A LINE L1 4 127 -5943 790 294 35 0 chr9 36719339 36719649 -81142978 + L1ME3A LINE L1 3591 3911 -2169 1067 163 53 10 chr9 36719676 36719885 -81142742 + LTR52 LTR ERVL 202 419 -2 2822 234 64 35 chr9 36719888 36720137 -81142490 + L1ME3A LINE L1 4963 5203 -901 1472 197 3 30 chr9 36720137 36720442 -81142185 + AluJo SINE Alu 2 298 -14 2822 234 64 35 chr9 36720442 36721281 -81141346 + L1ME3A LINE L1 5203 6087 -17 1382 96 0 0 chr9 36721282 36721460 -81141167 + MSTA LTR MaLR 2 179 -249 15738 135 42 58 chr9 36721460 36722461 -81140166 + L1MA3 LINE L1 1677 2692 -5032 765 164 0 0 chr9 36722461 36722577 -81140050 + FLAM_C SINE Alu 1 116 -27 15738 135 42 58 chr9 36722577 36722616 -81140011 + L1MA3 LINE L1 2692 2730 -4994 1557 38 0 0 chr9 36722616 36722799 -81139828 - L1PA8 LINE L1 0 6172 5990 15738 135 42 58 chr9 36722799 36723277 -81139350 + L1MA3 LINE L1 2730 3214 -4510 1456 147 22 0 chr9 36723277 36723553 -81139074 + AluSx SINE Alu 55 335 0 15738 135 42 58 chr9 36723553 36724093 -81138534 + L1MA3 LINE L1 3214 3761 -3963 2130 118 0 0 chr9 36724093 36724397 -81138230 + AluSq SINE Alu 1 304 -9 15738 135 42 58 chr9 36724397 36728371 -81134256 + L1MA3 LINE L1 3761 7724 0 1394 95 68 16 chr9 36728373 36728625 -81134002 - L1M2 LINE L1 -768 5529 5265 26 30 0 0 chr9 36728627 36728660 -81133967 + AT_rich Low_complexity Low_complexity 1 33 0 932 198 0 12 chr9 36728660 36728822 -81133805 - FRAM SINE Alu -16 160 1 4760 160 30 24 chr9 36728823 36729114 -81133513 - L1 LINE L1 -874 5914 5626 2016 132 17 0 chr9 36729114 36729409 -81133218 - AluSp SINE Alu -13 300 1 4760 160 30 24 chr9 36729409 36729909 -81132718 - L1 LINE L1 -1162 5626 5112 1982 125 7 0 chr9 36729909 36730213 -81132414 - AluSg SINE Alu 0 306 1 4760 160 30 24 chr9 36730213 36730489 -81132138 - L1 LINE L1 -1676 5112 4839 7656 208 28 18 chr9 36730490 36732136 -81130491 - L1 LINE L1 -5120 1669 7 1310 218 27 7 chr9 36732292 36732586 -81130041 + LTR53 LTR ERVL 209 508 -11 1937 145 0 0 chr9 36733720 36734016 -81128611 + AluJb SINE Alu 1 296 -16 255 208 19 0 chr9 36734027 36734080 -81128547 - MER5A DNA MER1_type 0 189 136 1091 181 48 20 chr9 36734081 36734329 -81128298 - MER45B DNA AcHobo 0 1040 786 542 247 140 6 chr9 36734352 36734530 -81128097 - L2 LINE L2 0 3313 3112 42778 34 0 1 chr9 36734709 36740865 -81121762 - L1PA3 LINE L1 -3 6152 4 355 200 0 0 chr9 36740865 36740940 -81121687 - MER45B DNA AcHobo -242 798 724 952 182 111 0 chr9 36740985 36741183 -81121444 - MER45B DNA AcHobo -711 329 110 569 272 80 42 chr9 36741410 36741623 -81121004 + MIR SINE MIR 7 227 -35 972 285 85 44 chr9 36741775 36741908 -81120719 + L1MC3 LINE L1 4151 4277 -2114 249 33 0 0 chr9 36741908 36741938 -81120689 + (GA)n Simple_repeat Simple_repeat 1 30 0 972 285 85 44 chr9 36741938 36742137 -81120490 + L1MC3 LINE L1 4277 4466 -1925 2159 95 7 20 chr9 36742137 36742431 -81120196 - AluSx SINE Alu -22 290 1 972 285 85 44 chr9 36742431 36743533 -81119094 + L1MC3 LINE L1 4466 5643 -748 284 192 0 0 chr9 36743538 36743590 -81119037 + LTR16B LTR ERVL 413 464 0 225 239 22 22 chr9 36743590 36743682 -81118945 + L1MC3 LINE L1 5913 6004 -1804 2034 149 3 0 chr9 36743842 36744144 -81118483 + AluSq SINE Alu 1 303 -10 1919 167 39 6 chr9 36744160 36744496 -81118131 - MER7A DNA MER2_type 0 346 2 430 249 9 9 chr9 36744496 36744724 -81117903 - L1MD2 LINE L1 -29 6330 6052 478 269 60 10 chr9 36745222 36745423 -81117204 + L1ME LINE L1 5533 5743 -378 3177 149 20 37 chr9 36745697 36746002 -81116625 + L1MC3 LINE L1 6428 6737 -1048 2453 74 3 0 chr9 36746002 36746300 -81116327 - AluSp SINE Alu -14 299 1 3177 149 20 37 chr9 36746300 36746639 -81115988 + L1MC3 LINE L1 6737 7061 -724 2173 176 5 0 chr9 36746655 36747053 -81115574 + L1MC3 LINE L1 7290 7689 -96 4201 183 31 24 chr9 36747053 36747500 -81115127 + L1MB3 LINE L1 4934 5376 -807 2035 136 3 7 chr9 36747500 36747802 -81114825 + AluSq SINE Alu 1 301 -12 4201 183 31 24 chr9 36747802 36748581 -81114046 + L1MB3 LINE L1 5376 6180 -3 419 154 55 0 chr9 36748590 36748681 -81113946 + L1MC3 LINE L1 7690 7785 0 2529 176 32 11 chr9 36748704 36749237 -81113390 + L1MB8 LINE L1 5586 6129 -49 5488 212 87 28 chr9 36749326 36751202 -81111425 - L1M2 LINE L1 -4709 2140 17 3835 218 39 5 chr9 36751201 36752335 -81110292 + L1MB4 LINE L1 3469 4640 -2925 * 3902 184 50 41 chr9 36752407 36752731 -81109896 + L1MB4 LINE L1 5945 6265 -1334 2253 99 0 0 chr9 36752731 36753036 -81109591 - AluSq SINE Alu 0 305 1 3902 184 50 41 chr9 36753036 36753297 -81109330 + L1MB4 LINE L1 6265 6522 -1077 2088 121 47 0 chr9 36753297 36753595 -81109032 - AluJb SINE Alu 0 312 1 3902 184 50 41 chr9 36753595 36754642 -81107985 + L1MB4 LINE L1 6522 7597 -2 428 111 14 0 chr9 36754658 36754730 -81107897 + L1MB8 LINE L1 6101 6173 -5 215 273 73 0 chr9 36756269 36756324 -81106303 - L3 LINE CR1 -1086 491 433 384 110 82 0 chr9 36756350 36756423 -81106204 + MER110A LTR ERV1 1 79 -389 552 194 101 73 chr9 36756426 36756674 -81105953 + MER110A LTR ERV1 214 468 0 1328 179 12 128 chr9 36758031 36758444 -81104183 - MLT1A1 LTR MaLR 0 365 1 388 165 13 0 chr9 36758562 36758641 -81103986 + MLT1D LTR MaLR 426 505 0 290 267 11 44 chr9 36758995 36759085 -81103542 + L2 LINE L2 3184 3270 -43 26 0 0 0 chr9 36759265 36759291 -81103336 + AT_rich Low_complexity Low_complexity 1 26 0 31 0 0 0 chr9 36760318 36760349 -81102278 + AT_rich Low_complexity Low_complexity 1 31 0 290 228 119 30 chr9 36760654 36760755 -81101872 + MER5A DNA MER1_type 79 188 -1 257 165 78 68 chr9 36760939 36761042 -81101585 - HAL1b LINE L1 0 1348 1245 1941 145 0 17 chr9 36761042 36761353 -81101274 - AluJo SINE Alu 0 306 1 3428 115 18 40 chr9 36761697 36762296 -81100331 + LTR60 LTR ERV1 1 586 0 2502 132 13 66 chr9 36762716 36762852 -81099775 - MER65A LTR ERV1 0 445 303 1869 164 3 10 chr9 36762852 36763157 -81099470 - AluJo SINE Alu -9 303 1 2502 132 13 66 chr9 36763157 36763490 -81099137 - MER65A LTR ERV1 -142 303 1 2621 275 126 56 chr9 36763572 36765134 -81097493 - L2 LINE L2 -33 3280 1618 2387 76 3 13 chr9 36765435 36765739 -81096888 + AluSp SINE Alu 1 301 -12 36 87 0 0 chr9 36766074 36766166 -81096461 + AT_rich Low_complexity Low_complexity 1 92 0 360 365 96 30 chr9 36766457 36766758 -81095869 + L1ME1 LINE L1 16 336 -6204 206 130 0 65 chr9 36766793 36766839 -81095788 + (TTTTC)n Simple_repeat Simple_repeat 2 44 0 1976 252 50 21 chr9 36767273 36768197 -81094430 + L1ME1 LINE L1 910 1820 -4720 632 168 44 0 chr9 36768203 36768316 -81094311 + AluJb SINE Alu 191 308 -4 672 208 84 69 chr9 36768316 36768663 -81093964 + L1ME1 LINE L1 1814 2165 -4375 * 1662 231 93 36 chr9 36768661 36768761 -81093866 + L1ME1 LINE L1 5074 5167 -1393 1659 190 19 16 chr9 36768761 36769072 -81093555 + AluJb SINE Alu 1 312 0 1662 231 93 36 chr9 36769072 36770121 -81092506 + L1ME1 LINE L1 5167 6289 -271 3100 157 50 48 chr9 36770125 36770929 -81091698 - LTR1 LTR ERV1 0 785 18 835 255 4 20 chr9 36770999 36771250 -81091377 + L1ME1 LINE L1 6295 6541 -19 5359 122 25 5 chr9 36771261 36772152 -81090475 - L1PA16 LINE L1 -4 6162 5254 562 283 85 9 chr9 36772284 36772507 -81090120 + MIR SINE MIR 22 261 -1 1201 194 9 0 chr9 36772965 36773192 -81089435 + L1PB4 LINE L1 5928 6156 0 6736 48 31 12 chr9 36773434 36774528 -81088099 + L1PA8 LINE L1 4711 5830 -342 2152 74 0 0 chr9 36774528 36774786 -81087841 + AluY SINE Alu 37 294 -17 6736 48 31 12 chr9 36774786 36775127 -81087500 + L1PA8 LINE L1 5830 6163 -9 437 254 52 66 chr9 36775206 36775419 -81087208 + MLT1K LTR MaLR 23 232 -356 352 278 128 75 chr9 36776995 36777261 -81085366 + MLT1K LTR MaLR 279 558 -30 409 286 8 30 chr9 36777608 36777741 -81084886 - MIR SINE MIR -110 152 23 4742 180 29 34 chr9 36777750 36779468 -81083159 - L1MB8 LINE L1 -12 6166 4441 213 39 0 0 chr9 36779468 36779494 -81083133 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4742 180 29 34 chr9 36779494 36779516 -81083111 - L1MB8 LINE L1 -1737 4441 4420 2170 125 0 0 chr9 36779516 36779805 -81082822 - AluSx SINE Alu -23 289 1 4742 180 29 34 chr9 36779805 36780301 -81082326 - L1MB8 LINE L1 -1758 4420 3940 22 0 0 0 chr9 36780531 36780553 -81082074 + AT_rich Low_complexity Low_complexity 1 22 0 545 271 91 20 chr9 36781131 36781330 -81081297 + MIR SINE MIR 2 214 -48 907 178 7 0 chr9 36781362 36781508 -81081119 + FRAM SINE Alu 1 146 -30 1240 210 9 103 chr9 36781537 36781906 -81080721 - MLT1A1 LTR MaLR 0 365 34 1468 29 6 0 chr9 36781907 36782116 -81080511 + L1PA3 LINE L1 5965 6174 0 31 0 0 0 chr9 36782291 36782322 -81080305 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr9 36782971 36782994 -81079633 + GC_rich Low_complexity Low_complexity 1 23 0 191 61 30 0 chr9 36783045 36783078 -81079549 + (CCG)n Simple_repeat Simple_repeat 2 35 0 301 254 225 14 chr9 36784080 36784218 -81078409 - MIR SINE MIR -15 247 81 1881 169 108 11 chr9 36784315 36784676 -81077951 + MSTD LTR MaLR 1 396 0 2074 154 38 47 chr9 36784713 36785136 -81077491 + L1M3 LINE L1 5008 5424 -756 656 197 7 36 chr9 36785136 36785273 -81077354 + FLAM_A SINE Alu 1 133 0 2074 154 38 47 chr9 36785273 36785512 -81077115 + L1M3 LINE L1 5424 5664 -516 2345 211 87 11 chr9 36786387 36786937 -81075690 - MLT1E LTR MaLR 0 593 2 1735 219 44 22 chr9 36787380 36787787 -81074840 + LTR40c LTR ERVL 47 462 -3 2095 105 39 0 chr9 36787792 36788077 -81074550 - AluSq SINE Alu -16 297 2 2374 94 0 0 chr9 36788359 36788668 -81073959 - AluY SINE Alu -2 309 1 238 45 45 23 chr9 36789123 36789167 -81073460 + (TTTTA)n Simple_repeat Simple_repeat 1 45 0 1966 172 64 3 chr9 36789461 36789804 -81072823 - MLT1A1 LTR MaLR -1 364 1 360 123 68 0 chr9 36790133 36790206 -81072421 - L1MA4 LINE L1 -125 6175 6098 984 197 282 36 chr9 36790207 36790298 -81072329 - L1M4 LINE L1 -743 5504 5437 1818 152 0 0 chr9 36790298 36790562 -81072065 - AluJo SINE Alu -19 293 30 984 197 282 36 chr9 36790562 36791004 -81071623 - L1M4 LINE L1 -810 5437 4835 4251 249 52 47 chr9 36791006 36791726 -81070901 - L1M4 LINE L1 -1752 4463 3748 661 156 92 0 chr9 36791726 36791835 -81070792 + AluJb SINE Alu 3 121 -191 4251 249 52 47 chr9 36791835 36793177 -81069450 - L1M4 LINE L1 -2467 3748 2355 218 95 24 0 chr9 36793177 36793219 -81069408 + (TA)n Simple_repeat Simple_repeat 1 43 0 4251 249 52 47 chr9 36793219 36793273 -81069354 - L1M4 LINE L1 -3860 2355 2303 * 6025 92 5 9 chr9 36793267 36794112 -81068515 - L1PA15 LINE L1 -2 6163 5323 1602 239 99 35 chr9 36794112 36794417 -81068210 - L1M4 LINE L1 -4039 2357 2073 1804 250 105 51 chr9 36794417 36795046 -81067581 + MLT2F LTR ERVL 1 663 0 1602 239 99 35 chr9 36795046 36795454 -81067173 - L1M4 LINE L1 -4323 2073 1598 775 178 115 0 chr9 36795431 36795605 -81067022 - L1MB7 LINE L1 0 6253 6060 * 255 323 43 30 chr9 36795693 36795857 -81066770 - MER5A DNA MER1_type 0 189 24 2935 13 0 0 chr9 36795961 36796277 -81066350 + AluYb8 SINE Alu 1 316 -2 201 220 0 51 chr9 36798017 36798076 -81064551 + (TTGGGG)n Simple_repeat Simple_repeat 5 60 0 333 22 152 0 chr9 36798786 36798832 -81063795 + MADE1 DNA Mariner 1 53 -27 1807 277 80 4 chr9 36801312 36801990 -81060637 + L2 LINE L2 1519 2247 -1067 916 216 117 87 chr9 36802038 36802450 -81060177 - L2 LINE L2 -616 2698 2275 231 342 140 18 chr9 36802448 36802562 -81060065 + L2 LINE L2 3138 3265 -7 * 292 303 28 9 chr9 36803000 36803109 -81059518 - L2 LINE L2 -1000 2314 2204 289 214 34 22 chr9 36803111 36803200 -81059427 - MIR SINE MIR -96 166 77 189 298 89 16 chr9 36810356 36810480 -81052147 - MIR SINE MIR -70 192 60 634 189 0 14 chr9 36813460 36813608 -81049019 + CT-rich Low_complexity Low_complexity 3 148 0 801 258 99 44 chr9 36814112 36814546 -81048081 - L2 LINE L2 -1239 2075 1618 2403 76 3 13 chr9 36814846 36815149 -81047478 + AluSp SINE Alu 1 300 -13 461 265 11 3 chr9 36815747 36815877 -81046750 - MER5A DNA MER1_type -48 141 1 588 207 0 0 chr9 36817344 36817455 -81045172 - L1M3 LINE L1 -429 5751 5641 3147 221 33 40 chr9 36817515 36817572 -81045055 - L1ME1 LINE L1 -5 6161 6105 2189 115 3 0 chr9 36817572 36817868 -81044759 + AluSq SINE Alu 1 297 -16 3147 221 33 40 chr9 36817868 36818382 -81044245 - L1ME1 LINE L1 -61 6105 5595 1686 181 10 67 chr9 36818382 36818768 -81043859 + MLT1A1 LTR MaLR 1 364 -1 3147 221 33 40 chr9 36818768 36819053 -81043574 - L1ME1 LINE L1 -571 5595 5310 805 210 176 0 chr9 36819385 36819623 -81043004 - L1ME1 LINE L1 -1286 4860 4581 436 154 0 13 chr9 36819625 36819703 -81042924 - MLT1E LTR MaLR 0 593 517 25 0 0 0 chr9 36819713 36819738 -81042889 + AT_rich Low_complexity Low_complexity 1 25 0 272 159 0 0 chr9 36819738 36819782 -81042845 - FLAM_A SINE Alu -4 129 86 6060 185 18 35 chr9 36819882 36821501 -81041126 - L1M4c LINE L1 -2660 4905 3313 45271 36 2 1 chr9 36821519 36827665 -81034962 - L1PA3 LINE L1 0 6155 2 1841 236 33 43 chr9 36827769 36827873 -81034754 - L1M4c LINE L1 -4411 3154 3050 2459 131 64 29 chr9 36827873 36828292 -81034335 + Tigger2a DNA MER2_type 1 434 0 1841 236 33 43 chr9 36828292 36828715 -81033912 - L1M4c LINE L1 -4515 3050 2631 472 215 131 0 chr9 36828715 36828822 -81033805 - FLAM_A SINE Alu -12 121 1 1841 236 33 43 chr9 36828822 36828902 -81033725 - L1M4c LINE L1 -4934 2631 2552 11430 187 16 25 chr9 36828917 36829457 -81033170 - L1P3 LINE L1 -2039 4422 3879 2830 20 0 0 chr9 36829457 36829761 -81032866 + AluYa5 SINE Alu 1 304 -7 11430 187 16 25 chr9 36829761 36833657 -81028970 - L1P3 LINE L1 -2582 3879 8 2017 221 64 80 chr9 36833662 36833979 -81028648 - L1M3c LINE L1 -4717 1858 1537 195 42 0 0 chr9 36833979 36834003 -81028624 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 2017 221 64 80 chr9 36834003 36834609 -81028018 - L1M3c LINE L1 -5038 1537 256 802 257 91 48 chr9 36834614 36835031 -81027596 - L1M4c LINE L1 -5412 2155 1721 236 351 50 18 chr9 36835307 36835529 -81027098 - L1M3c LINE L1 -6300 242 14 2234 277 32 17 chr9 36835529 36836237 -81026390 - L1MEc LINE L1 -5642 754 36 376 70 0 53 chr9 36836310 36836367 -81026260 + MADE1 DNA Mariner 27 80 0 189 0 0 0 chr9 36836594 36836615 -81026012 + (TG)n Simple_repeat Simple_repeat 1 21 0 242 304 38 0 chr9 36836689 36836768 -81025859 + L1ME LINE L1 142 223 -5982 247 261 59 25 chr9 36837238 36837357 -81025270 + L1ME LINE L1 628 750 -5646 1358 213 80 1 chr9 36837362 36837751 -81024876 + L1MC4 LINE L1 6761 7216 -592 788 205 119 5 chr9 36837813 36837998 -81024629 - MLT1A1 LTR MaLR 0 365 160 16732 150 60 26 chr9 36838013 36839552 -81023075 + L1M1 LINE L1 400 1886 -5679 333 0 0 0 chr9 36839552 36839589 -81023038 + (GA)n Simple_repeat Simple_repeat 2 38 0 16732 150 60 26 chr9 36839589 36841031 -81021596 + L1M1 LINE L1 1886 3278 -4287 1980 80 0 16 chr9 36841031 36841280 -81021347 + AluSc SINE Alu 1 245 -64 16732 150 60 26 chr9 36841280 36841417 -81021210 + L1M1 LINE L1 3278 3354 -4211 2054 135 3 22 chr9 36841417 36841735 -81020892 + AluSx SINE Alu 1 312 0 16732 150 60 26 chr9 36841735 36841801 -81020826 + L1M1 LINE L1 3354 3416 -4149 1043 231 63 65 chr9 36841802 36842220 -81020407 - MLT1E LTR MaLR -101 492 36 189 229 21 0 chr9 36844447 36844495 -81018132 - L2 LINE L2 -3 3269 3221 5803 83 29 2 chr9 36844885 36845683 -81016944 - L1PA11 LINE L1 -1 6173 5355 2512 134 15 106 chr9 36846172 36846711 -81015916 - L1MC1 LINE L1 0 6333 5844 871 175 28 0 chr9 36846711 36846854 -81015773 - AluJb SINE Alu -21 291 145 234 79 0 26 chr9 36846854 36846892 -81015735 + L1P4 LINE L1 5713 5749 -419 3519 191 57 15 chr9 36846895 36848327 -81014300 - L1MC1 LINE L1 -491 5853 4360 12093 23 7 1 chr9 36848343 36850449 -81012178 - L1PA2 LINE L1 -3 6152 4032 763 62 0 0 chr9 36850449 36850546 -81012081 + L1PA2 LINE L1 3911 4007 -2139 25 0 0 0 chr9 36850925 36850950 -81011677 + AT_rich Low_complexity Low_complexity 1 25 0 2434 112 36 29 chr9 36850950 36851335 -81011292 - L1MA1 LINE L1 -4 6298 5911 529 262 56 60 chr9 36851504 36851737 -81010890 - MER112 DNA MER1_type -8 252 21 405 0 0 0 chr9 36852038 36852083 -81010544 + (CA)n Simple_repeat Simple_repeat 1 45 0 336 24 0 0 chr9 36852082 36852123 -81010504 + (TC)n Simple_repeat Simple_repeat 1 41 0 * 2501 118 16 3 chr9 36852244 36852616 -81010011 + L1MC2 LINE L1 5605 5981 -352 * 4430 135 74 33 chr9 36852609 36852797 -81009830 + L1MB4 LINE L1 5288 5467 -713 195 42 0 0 chr9 36852797 36852821 -81009806 + (GAAA)n Simple_repeat Simple_repeat 2 25 0 4430 135 74 33 chr9 36852821 36853132 -81009495 + L1MB4 LINE L1 5467 5764 -416 2331 104 3 0 chr9 36853132 36853439 -81009188 + AluSx SINE Alu 1 308 -4 4430 135 74 33 chr9 36853439 36853790 -81008837 + L1MB4 LINE L1 5764 6174 -6 341 145 0 16 chr9 36853802 36853864 -81008763 + L1MC2 LINE L1 5968 6028 -316 1415 99 26 0 chr9 36853864 36854055 -81008572 - L1PA7 LINE L1 -1 6153 5958 2051 130 9 22 chr9 36854055 36854376 -81008251 + L1MC2 LINE L1 6015 6333 -11 42240 63 6 4 chr9 36854386 36860517 -81002110 + L1PA5 LINE L1 11 6154 0 3777 265 94 43 chr9 36862181 36862862 -80999765 + L2 LINE L2 1486 2131 -1182 766 87 0 16 chr9 36862862 36862989 -80999638 + (TCTA)n Simple_repeat Simple_repeat 2 126 0 3777 265 94 43 chr9 36862989 36864046 -80998581 + L2 LINE L2 2131 3312 -1 838 308 70 39 chr9 36864163 36864520 -80998107 + L2 LINE L2 2898 3265 -7 197 204 41 20 chr9 36864773 36864822 -80997805 - L3 LINE CR1 -951 626 577 2359 118 0 0 chr9 36869443 36869756 -80992871 + AluSq SINE Alu 1 313 0 294 286 168 31 chr9 36870763 36870957 -80991670 - MIR SINE MIR -18 244 22 2229 107 3 3 chr9 36872998 36873298 -80989329 + AluSx SINE Alu 1 300 -12 788 147 128 39 chr9 36873511 36873718 -80988909 + L1MB4 LINE L1 5980 6179 -1 5701 93 1 0 chr9 36873803 36874535 -80988092 - L1PB1 LINE L1 0 6151 5419 501 281 15 15 chr9 36875945 36876080 -80986547 + MER5A DNA MER1_type 7 141 -48 1475 222 35 86 chr9 36876349 36876441 -80986186 + L1M4 LINE L1 3258 3353 -2793 2030 141 0 0 chr9 36876441 36876725 -80985902 + AluJb SINE Alu 1 284 -28 1475 222 35 86 chr9 36876725 36876784 -80985843 + L1M4 LINE L1 3353 3413 -2733 1147 149 198 71 chr9 36876784 36877107 -80985520 + MLT1A1 LTR MaLR 1 364 -1 1475 222 35 86 chr9 36877107 36877500 -80985127 + L1M4 LINE L1 3413 3775 -2371 739 197 90 34 chr9 36877498 36877732 -80984895 + L1MC5 LINE L1 7347 7593 -368 * 621 121 0 0 chr9 36877759 36877842 -80984785 + AluS SINE Alu 2 84 -229 650 243 56 25 chr9 36877844 36878128 -80984499 + L1MC5 LINE L1 7585 7877 -84 1934 163 0 16 chr9 36878493 36878799 -80983828 + AluJb SINE Alu 3 303 -9 342 239 129 18 chr9 36879102 36879272 -80983355 - MIR SINE MIR -6 256 67 1564 168 8 0 chr9 36879450 36879700 -80982927 + AluJo SINE Alu 41 292 -20 4731 194 3 42 chr9 36879885 36881026 -80981601 - L1 LINE L1 -1576 4570 3371 186 329 62 41 chr9 36881703 36881849 -80980778 - L2 LINE L2 -189 3083 2935 1828 191 12 9 chr9 36882255 36882600 -80980027 - MER4D LTR ERV1 0 903 558 879 103 0 0 chr9 36882672 36882788 -80979839 + AluSg/x SINE Alu 185 300 -10 879 167 86 62 chr9 36882788 36883023 -80979604 + LTR48 LTR ERV1 61 345 -354 357 191 0 16 chr9 36883021 36883084 -80979543 - AluJo SINE Alu -14 288 227 * 858 173 6 26 chr9 36883084 36883240 -80979387 - AluJo SINE Alu -148 164 12 463 216 81 0 chr9 36883250 36883361 -80979266 + LTR48 LTR ERV1 337 456 -331 909 228 39 27 chr9 36883379 36883638 -80978989 + LTR48B LTR ERV1 381 642 -2 2318 94 0 28 chr9 36883947 36884265 -80978362 - AluSg SINE Alu -1 309 1 744 256 97 43 chr9 36884431 36884802 -80977825 - L2 LINE L2 0 3313 2923 233 197 15 30 chr9 36884920 36884962 -80977665 + (CTTAT)n Simple_repeat Simple_repeat 4 45 -23 2271 101 7 7 chr9 36884962 36885270 -80977357 - AluSg SINE Alu -2 308 1 543 246 149 0 chr9 36885273 36885387 -80977240 - FLAM_A SINE Alu -2 131 1 233 197 15 30 chr9 36885387 36885406 -80977221 + (CTTAT)n Simple_repeat Simple_repeat 47 68 0 2443 50 0 20 chr9 36885749 36886051 -80976576 - AluY SINE Alu -15 296 1 212 261 0 0 chr9 36886393 36886439 -80976188 + CT-rich Low_complexity Low_complexity 5 50 0 203 267 0 0 chr9 36886886 36886931 -80975696 + CT-rich Low_complexity Low_complexity 5 49 0 877 120 72 30 chr9 36887037 36887204 -80975423 + L1MA8 LINE L1 6112 6285 -6 1818 185 0 13 chr9 36887438 36887740 -80974887 - AluJo SINE Alu -14 298 1 2310 97 3 3 chr9 36887859 36888168 -80974459 - AluSg1 SINE Alu 0 309 1 366 308 58 55 chr9 36888372 36888664 -80973963 + L1MDa LINE L1 57 349 -6191 229 323 50 10 chr9 36889034 36889133 -80973494 + L1MDa LINE L1 794 896 -5634 1394 246 102 39 chr9 36889243 36889998 -80972629 + L1MDa LINE L1 920 1679 -4861 507 278 71 71 chr9 36889998 36890250 -80972377 + MER110-int LTR ERV1 2213 2464 -2183 574 246 157 26 chr9 36890312 36890747 -80971880 - HAL1 LINE L1 -1843 664 142 371 353 41 63 chr9 36890932 36891201 -80971426 - HAL1b LINE L1 -1059 289 27 1369 147 4 26 chr9 36891391 36891622 -80971005 - AluJb SINE Alu -1 311 86 1673 85 0 5 chr9 36891638 36891850 -80970777 - AluJb SINE Alu -2 310 100 1791 130 77 80 chr9 36892418 36892794 -80969833 + THE1C LTR MaLR 1 375 0 1713 188 102 5 chr9 36892980 36893353 -80969274 + Tigger6a DNA MER2_type 405 813 -270 192 40 0 0 chr9 36893708 36893733 -80968894 + (TCTCC)n Simple_repeat Simple_repeat 5 29 0 1335 144 55 19 chr9 36895232 36895503 -80967124 + Tigger6a DNA MER2_type 803 1083 0 452 158 0 0 chr9 36895666 36895742 -80966885 - L1MC2 LINE L1 -8 6336 6261 2207 119 44 0 chr9 36895787 36896130 -80966497 - L1MA4 LINE L1 -7 6293 5936 5245 109 23 9 chr9 36896136 36896924 -80965703 - L1MA3 LINE L1 -106 6841 6043 4960 150 25 0 chr9 36896923 36897790 -80964837 - L1MA3 LINE L1 -1293 5495 4607 * 764 156 4 110 chr9 36897810 36898068 -80964559 - MER31-int LTR ERV1 -3250 1686 1270 8466 201 53 9 chr9 36899671 36904490 -80958137 - L1MA3 LINE L1 -2191 4597 5 248 196 0 0 chr9 36904490 36904541 -80958086 - L2 LINE L2 -566 2748 2698 1993 74 47 37 chr9 36904549 36904624 -80958003 + L1MA2 LINE L1 6004 6077 -227 1724 104 0 0 chr9 36904624 36904845 -80957782 + AluSq SINE Alu 83 303 -10 1993 74 47 37 chr9 36904845 36905067 -80957560 + L1MA2 LINE L1 6077 6304 0 506 196 101 51 chr9 36905996 36906134 -80956493 + L2 LINE L2 3168 3312 -1 2293 128 35 99 chr9 36907487 36907693 -80954934 + MSTA LTR MaLR 2 165 -263 2501 66 3 0 chr9 36907703 36908005 -80954622 + AluY SINE Alu 1 303 -8 1347 103 20 5 chr9 36908005 36908189 -80954438 + L1PB2 LINE L1 5962 6151 0 2293 128 35 99 chr9 36908189 36908436 -80954191 + MSTA LTR MaLR 165 426 -2 181 241 35 17 chr9 36908906 36908964 -80953663 + L3 LINE CR1 1483 1541 -36 268 194 56 56 chr9 36909106 36909178 -80953449 + L2 LINE L2 3196 3267 -5 40 83 0 0 chr9 36909299 36909395 -80953232 + AT_rich Low_complexity Low_complexity 1 96 0 22 35 0 0 chr9 36909403 36909432 -80953195 + AT_rich Low_complexity Low_complexity 1 29 0 481 239 14 78 chr9 36909551 36909595 -80953032 + L2 LINE L2 3181 3226 -87 800 149 15 22 chr9 36909595 36909729 -80952898 - FLAM_A SINE Alu 0 133 1 481 239 14 78 chr9 36909729 36909826 -80952801 + L2 LINE L2 3226 3313 0 257 253 0 76 chr9 36909920 36909999 -80952628 - MIR SINE MIR 0 262 190 1684 84 0 5 chr9 36910050 36910264 -80952363 + AluY SINE Alu 1 213 -98 1380 114 144 0 chr9 36910370 36910571 -80952056 - AluSx SINE Alu -39 273 44 411 188 47 47 chr9 36911443 36911528 -80951099 + MER58B DNA MER1_type 256 340 -1 249 163 0 0 chr9 36911510 36911553 -80951074 + MER58B DNA MER1_type 299 341 0 * 1036 245 108 89 chr9 36911554 36911875 -80950752 - L2 LINE L2 -1134 2180 1842 2214 112 0 26 chr9 36911875 36912187 -80950440 + AluSx SINE Alu 3 306 -6 1036 245 108 89 chr9 36912187 36912429 -80950198 - L2 LINE L2 -1472 1842 1606 5697 24 2 5 chr9 36912700 36913329 -80949298 + SVA Other Other 757 1383 -3 535 241 0 9 chr9 36914183 36914291 -80948336 + MIR SINE MIR 38 144 -118 2382 62 7 26 chr9 36914313 36914619 -80948008 + AluY SINE Alu 2 301 -10 32 0 0 0 chr9 36914631 36914663 -80947964 + AT_rich Low_complexity Low_complexity 1 32 0 2028 123 10 3 chr9 36914663 36914964 -80947663 + AluSp SINE Alu 1 303 -10 1363 281 118 5 chr9 36914987 36915404 -80947223 - LTR16B LTR ERVL 0 464 1 4118 89 67 13 chr9 36915588 36916138 -80946489 + LTR19B LTR ERV1 1 580 0 684 205 16 8 chr9 36916138 36916265 -80946362 + FLAM_C SINE Alu 5 132 -11 2233 314 40 36 chr9 36916289 36917206 -80945421 - ERVL LTR ERVL -483 5281 4369 2222 127 40 54 chr9 36917206 36917576 -80945051 - MLT1A1 LTR MaLR 0 365 1 2233 314 40 36 chr9 36917576 36918343 -80944284 - ERVL LTR ERVL -1395 4369 3606 2696 72 3 3 chr9 36918343 36918677 -80943950 + L1PA6 LINE L1 5821 6154 0 2233 314 40 36 chr9 36918677 36918839 -80943788 - ERVL LTR ERVL -2158 3606 2393 192 40 0 0 chr9 36918850 36918875 -80943752 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1615 269 35 40 chr9 36918899 36919379 -80943248 - ERVL LTR ERVL -2723 2273 1796 2590 279 65 43 chr9 36919465 36920391 -80942236 - ERVL LTR ERVL -3579 1417 472 1199 183 0 0 chr9 36920394 36920569 -80942058 + FAM SINE Alu 1 175 0 389 282 29 62 chr9 36920948 36921157 -80941470 - LTR16B LTR ERVL 0 464 263 1547 231 81 21 chr9 36921157 36921529 -80941098 + MSTD LTR MaLR 1 394 -2 1143 244 34 8 chr9 36921529 36921791 -80940836 - LTR16B LTR ERVL -195 269 1 289 280 21 54 chr9 36921793 36921886 -80940741 + MIR SINE MIR 161 250 -12 475 268 48 74 chr9 36922621 36922852 -80939775 + MLT1K LTR MaLR 3 227 -361 8194 113 21 18 chr9 36922892 36923491 -80939136 + Tigger3b DNA MER2_type 1 597 -2431 2598 49 0 7 chr9 36923491 36923799 -80938828 + AluY SINE Alu 1 306 -5 8194 113 21 18 chr9 36923799 36924426 -80938201 + Tigger3b DNA MER2_type 597 1231 0 319 115 262 0 chr9 36924426 36924487 -80938140 + Tigger4(Zombi) DNA MER2_type 2655 2731 0 2719 205 79 80 chr9 36924488 36924932 -80937695 + L1M4 LINE L1 2260 2703 -3443 6358 60 1 1 chr9 36924932 36925692 -80936935 + L1PA8 LINE L1 5412 6171 -1 2719 205 79 80 chr9 36925692 36925781 -80936846 + L1M4 LINE L1 2703 2791 -3355 1891 94 4 16 chr9 36925781 36926037 -80936590 + AluSx SINE Alu 51 303 -9 2719 205 79 80 chr9 36926037 36926258 -80936369 + L1M4 LINE L1 2791 3011 -3135 775 114 9 0 chr9 36926258 36926372 -80936255 + L1MB7 LINE L1 6051 6165 -19 2719 205 79 80 chr9 36926372 36926725 -80935902 + L1M4 LINE L1 3011 3368 -2778 1611 196 38 25 chr9 36926729 36926913 -80935714 - MLT1E LTR MaLR 0 593 402 2815 158 33 56 chr9 36926913 36927427 -80935200 + MLT1D LTR MaLR 4 505 0 1611 196 38 25 chr9 36927427 36927558 -80935069 - MLT1E LTR MaLR -191 402 274 4111 206 74 54 chr9 36927558 36928393 -80934234 + L1M4 LINE L1 3988 4857 -1289 603 152 0 0 chr9 36928393 36928492 -80934135 - L1MA10 LINE L1 -2 6332 6234 4111 206 74 54 chr9 36928492 36928881 -80933746 + L1M4 LINE L1 4857 5237 -909 1113 154 99 41 chr9 36928881 36929102 -80933525 - AluJo SINE Alu -78 234 1 1412 173 69 49 chr9 36929327 36929633 -80932994 + AluJb SINE Alu 1 312 0 827 150 8 0 chr9 36929697 36929824 -80932803 + FLAM_C SINE Alu 5 132 -1 364 136 0 0 chr9 36930479 36930538 -80932089 + Alu SINE Alu 242 300 -2 750 160 0 0 chr9 36930732 36930838 -80931789 - FLAM_C SINE Alu -36 107 2 2209 97 7 3 chr9 36931061 36931350 -80931277 + AluSx SINE Alu 1 290 -22 267 314 79 36 chr9 36931795 36931935 -80930692 + L2 LINE L2 3114 3259 -13 2038 103 29 0 chr9 36931945 36932217 -80930410 - AluSx SINE Alu -32 280 1 388 342 9 20 chr9 36932566 36932732 -80929895 + MIR SINE MIR 2 166 -62 238 256 282 0 chr9 36934361 36934439 -80928188 - L2 LINE L2 -17 3255 3156 273 327 9 35 chr9 36935220 36935333 -80927294 + L2 LINE L2 2926 3035 -237 209 288 17 0 chr9 36935407 36935466 -80927161 - L2 LINE L2 0 3272 3213 185 229 0 62 chr9 36935446 36935494 -80927133 + L2 LINE L2 3223 3267 -5 * 643 88 0 0 chr9 36937195 36937275 -80925352 + FLAM_A SINE Alu 30 109 -33 625 220 95 18 chr9 36939208 36939376 -80923251 + AluJo SINE Alu 1 181 -131 484 130 169 0 chr9 36939411 36939488 -80923139 + FLAM_A SINE Alu 21 110 -32 1251 176 3 150 chr9 36939597 36939944 -80922683 - AluJo SINE Alu -5 297 2 690 261 63 34 chr9 36940157 36940395 -80922232 - MER112 DNA MER1_type -8 252 8 380 264 161 35 chr9 36940990 36941164 -80921463 - L1ME4a LINE L1 -195 5926 5731 303 284 47 100 chr9 36941740 36942126 -80920501 - L2 LINE L2 -114 3158 2726 261 327 115 59 chr9 36942124 36942264 -80920363 + L2 LINE L2 2301 2432 -882 * 2518 81 0 0 chr9 36942264 36942572 -80920055 + AluY SINE Alu 2 309 -2 261 327 115 59 chr9 36942572 36942770 -80919857 + L2 LINE L2 2432 2658 -656 599 221 18 0 chr9 36943876 36944020 -80918607 + FLAM_A SINE Alu 2 147 0 329 259 65 53 chr9 36944838 36945008 -80917619 + MER20B DNA MER1_type 5 176 -607 2548 67 0 0 chr9 36945537 36945836 -80916791 + AluSc SINE Alu 1 299 -10 553 158 97 2 chr9 36945878 36946002 -80916625 - MER20 DNA MER1_type -2 217 81 1037 173 18 0 chr9 36946903 36947071 -80915556 - FRAM SINE Alu -5 171 1 371 327 89 9 chr9 36947074 36947288 -80915339 + L2 LINE L2 1767 1997 -1317 1092 284 202 19 chr9 36947381 36948064 -80914563 + L2 LINE L2 1973 2780 -534 461 296 43 12 chr9 36948826 36948988 -80913639 + MIR3 SINE MIR 36 202 -6 22 0 0 0 chr9 36954640 36954662 -80907965 + AT_rich Low_complexity Low_complexity 1 22 0 670 233 218 5 chr9 36956115 36956321 -80906306 - MIR SINE MIR -10 252 3 191 283 100 0 chr9 36956554 36956614 -80906013 - L2 LINE L2 -2855 459 394 219 331 56 28 chr9 36956907 36957049 -80905578 + MIR SINE MIR 104 249 -13 506 280 212 40 chr9 36957319 36957461 -80905166 + L3 LINE CR1 816 932 -645 2306 118 0 13 chr9 36957461 36957776 -80904851 + AluSx SINE Alu 1 311 -1 506 280 212 40 chr9 36957776 36958105 -80904522 + L3 LINE CR1 932 1368 -209 1442 95 5 38 chr9 36958976 36959186 -80903441 - AluSg/x SINE Alu 0 312 110 208 283 0 0 chr9 36961152 36961198 -80901429 + polypurine Low_complexity Low_complexity 1 46 0 547 202 79 0 chr9 36962848 36962962 -80899665 - MIR3 SINE MIR 0 208 86 2371 102 3 0 chr9 36965860 36966163 -80896464 - AluSx SINE Alu -7 305 2 2235 90 28 3 chr9 36967389 36967677 -80894950 - AluSq SINE Alu -18 295 1 881 204 64 30 chr9 36970107 36970342 -80892285 + L1M4 LINE L1 793 1035 -5507 2872 78 92 5 chr9 36970342 36970754 -80891873 + LTR7 LTR ERV1 1 448 -2 11937 93 12 42 chr9 36970756 36973260 -80889367 + HERVH LTR ERV1 1 2318 -5395 2436 100 0 28 chr9 36973360 36973749 -80888878 + HERVH LTR ERV1 2618 2995 -4718 * 5803 93 5 2 chr9 36973728 36974580 -80888047 + HERVH LTR ERV1 3140 3993 -3720 4205 140 8 1 chr9 36974582 36975240 -80887387 + HERVH LTR ERV1 4488 5149 -2564 1340 118 38 0 chr9 36975241 36975453 -80887174 + HERVH LTR ERV1 5600 5819 -1894 * 2149 98 79 14 chr9 36975451 36975819 -80886808 + HERVH LTR ERV1 7322 7713 0 2239 83 246 6 chr9 36975819 36976180 -80886447 + LTR7 LTR ERV1 1 448 -2 468 208 58 52 chr9 36976182 36976336 -80886291 + L1M4 LINE L1 1031 1185 -5357 747 192 8 0 chr9 36976349 36976469 -80886158 - FLAM_C SINE Alu -22 121 1 1848 210 72 44 chr9 36976469 36976537 -80886090 + L1M4 LINE L1 1178 1243 -5403 1497 206 17 7 chr9 36976537 36976829 -80885798 + AluJo SINE Alu 9 303 -9 1848 210 72 44 chr9 36976829 36977496 -80885131 + L1M4 LINE L1 1243 1917 -4729 1848 231 17 0 chr9 36978112 36978576 -80884051 + L1 LINE L1 3549 4020 -2126 647 214 69 6 chr9 36978676 36978849 -80883778 + L1 LINE L1 3990 4173 -1973 630 175 0 0 chr9 36978849 36978946 -80883681 + AluJ/FLAM SINE Alu 1 97 -215 1510 200 35 0 chr9 36978954 36979269 -80883358 + MST-int LTR MaLR 124 449 -1202 4881 68 15 48 chr9 36979270 36979596 -80883031 - MER4A LTR ERV1 0 664 371 2002 127 9 64 chr9 36979596 36979926 -80882701 + AluSx SINE Alu 1 312 0 4881 68 15 48 chr9 36979926 36980286 -80882341 - MER4A LTR ERV1 -293 371 1 3104 151 79 18 chr9 36980290 36980948 -80881679 - MER4A-int LTR ERV1 0 6598 5901 934 135 0 0 chr9 36980953 36981086 -80881541 + AluSq/x SINE Alu 1 133 -179 1697 186 13 16 chr9 36981088 36981395 -80881232 + AluSx SINE Alu 1 306 -6 1140 117 22 70 chr9 36981397 36981810 -80880817 + L1MCa LINE L1 1477 1954 -4472 1880 162 3 23 chr9 36981939 36982241 -80880386 - AluSx SINE Alu -16 296 1 4017 136 40 28 chr9 36982241 36982891 -80879736 - MER4A-int LTR ERV1 -917 5029 4377 2183 161 0 0 chr9 36982891 36983202 -80879425 + AluSx SINE Alu 1 311 -1 4017 136 40 28 chr9 36983202 36983337 -80879290 - MER4A-int LTR ERV1 -1569 4377 4245 2448 88 0 0 chr9 36983337 36983633 -80878994 + AluSg SINE Alu 1 296 -14 7023 139 92 50 chr9 36983652 36984004 -80878623 - MER4-int LTR ERV1 -1744 4854 4518 2205 106 0 0 chr9 36984004 36984296 -80878331 + AluSx SINE Alu 1 292 -20 7023 139 92 50 chr9 36984296 36985950 -80876677 - MER4-int LTR ERV1 -2080 4518 1723 1712 162 0 25 chr9 36985950 36986264 -80876363 + AluSx SINE Alu 7 312 0 5397 80 44 31 chr9 36986298 36987024 -80875603 - L1PA11 LINE L1 0 6174 5436 1847 157 3 0 chr9 36987024 36987318 -80875309 - AluSx SINE Alu -17 295 1 5397 80 44 31 chr9 36987318 36987387 -80875240 - L1PA11 LINE L1 -738 5436 5369 954 162 39 15 chr9 36987387 36987591 -80875036 - MER4-int LTR ERV1 -5036 1722 1514 1508 142 56 19 chr9 36987600 36987679 -80874948 - MER4-int LTR ERV1 -4312 2286 2211 2333 66 0 13 chr9 36987679 36987980 -80874647 + AluY SINE Alu 1 297 -14 1508 142 56 19 chr9 36987980 36988223 -80874404 - MER4-int LTR ERV1 -4387 2211 1952 245 177 0 81 chr9 36988245 36988307 -80874320 - LTR26 LTR ERV1 -68 535 479 4622 99 0 2 chr9 36988309 36988947 -80873680 - MER4-int LTR ERV1 -3094 4619 3995 2560 137 0 3 chr9 36988957 36989338 -80873289 - MER4-int LTR ERV1 -3977 3736 3357 7979 175 37 23 chr9 36989338 36991686 -80870941 - MER4-int LTR ERV1 -4071 2583 793 1181 194 27 34 chr9 36991741 36992168 -80870459 - MER4-int LTR ERV1 -7255 458 1 1323 175 74 105 chr9 36992175 36992632 -80869995 - LTR7 LTR ERV1 -7 443 1 1982 161 40 70 chr9 36992632 36993128 -80869499 - MER4A-int LTR ERV1 -4593 2944 2435 360 0 0 0 chr9 36993128 36993168 -80869459 + (CA)n Simple_repeat Simple_repeat 2 41 0 1982 161 40 70 chr9 36993168 36993228 -80869399 - MER4A-int LTR ERV1 -5102 2435 1161 717 121 0 0 chr9 36993231 36993330 -80869297 + AluS SINE Alu 2 100 -212 2010 112 34 0 chr9 36993330 36993625 -80869002 + AluSx SINE Alu 1 305 -7 2257 122 19 72 chr9 36993625 36993709 -80868918 - MER83 LTR ERV1 -53 395 308 4125 80 18 11 chr9 36993709 36994259 -80868368 + MER41A LTR ERV1 1 554 0 2257 122 19 72 chr9 36994259 36994591 -80868036 - MER83 LTR ERV1 -140 308 1 2604 103 110 55 chr9 36994596 36995154 -80867473 - MER4A-int LTR ERV1 -5952 646 1 4611 93 16 31 chr9 36995157 36995831 -80866796 - MER4A LTR ERV1 0 664 1 4740 208 19 18 chr9 36995835 36996762 -80865865 + MSTB1-int LTR MaLR 451 1378 -273 1393 186 4 4 chr9 36996811 36997080 -80865547 - AluJo SINE Alu -41 271 3 1421 136 49 15 chr9 36997080 36997345 -80865282 + MSTB1-int LTR MaLR 1376 1649 -2 2178 137 109 0 chr9 36997437 36997803 -80864824 + MSTB1 LTR MaLR 27 432 0 1022 175 10 10 chr9 36997887 36998081 -80864546 - AluJo SINE Alu -118 194 1 2131 127 0 0 chr9 36998091 36998391 -80864236 - AluSg SINE Alu -10 300 1 789 284 58 47 chr9 36999238 36999372 -80863255 + L1MEd LINE L1 457 588 -5531 1966 133 0 0 chr9 36999372 36999666 -80862961 + AluSx SINE Alu 1 294 -18 243 0 0 0 chr9 36999670 36999697 -80862930 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 789 284 58 47 chr9 36999697 36999937 -80862690 + L1MEd LINE L1 590 840 -5279 308 330 20 10 chr9 36999974 37000074 -80862553 - L2 LINE L2 -189 3083 2983 2119 91 24 10 chr9 37000075 37000372 -80862255 + AluY SINE Alu 1 301 -10 680 344 96 43 chr9 37000436 37001131 -80861496 - L2 LINE L2 -340 2974 2243 234 233 49 37 chr9 37001295 37001405 -80861222 + L1ME LINE L1 5714 5828 -293 1944 128 3 16 chr9 37001405 37001541 -80861086 + AluSx SINE Alu 1 137 -175 2081 128 0 0 chr9 37001541 37001845 -80860782 + AluSq SINE Alu 1 304 -9 1944 128 3 16 chr9 37001845 37002014 -80860613 + AluSx SINE Alu 137 302 -10 234 233 49 37 chr9 37002014 37002066 -80860561 + L1ME LINE L1 5828 5878 -243 918 87 0 0 chr9 37002100 37002215 -80860412 + AluSg1 SINE Alu 29 143 -166 1966 83 0 0 chr9 37002216 37002468 -80860159 + AluSg SINE Alu 2 253 -57 1136 110 0 0 chr9 37002479 37002670 -80859957 + AluSg1 SINE Alu 119 309 0 1892 109 42 7 chr9 37002714 37002999 -80859628 + AluSg SINE Alu 3 297 -13 470 111 0 0 chr9 37004464 37004527 -80858100 + MLT1A2 LTR MaLR 266 328 -46 189 107 0 0 chr9 37004528 37004556 -80858071 + (A)n Simple_repeat Simple_repeat 1 28 0 21 36 0 0 chr9 37004629 37004657 -80857970 + AT_rich Low_complexity Low_complexity 1 28 0 908 106 15 0 chr9 37004784 37004916 -80857711 + AluJo SINE Alu 1 134 -178 1650 130 0 4 chr9 37005136 37005383 -80857244 + AluSq SINE Alu 1 246 -67 1702 166 7 7 chr9 37005488 37005784 -80856843 + AluJb SINE Alu 1 296 -16 890 184 0 18 chr9 37006112 37006280 -80856347 - FRAM SINE Alu -10 166 2 553 281 0 0 chr9 37006304 37006418 -80856209 - Charlie8 DNA MER1_type -2152 265 152 2221 75 0 0 chr9 37006502 37006810 -80855817 + AluY SINE Alu 2 309 0 968 330 90 44 chr9 37006884 37007910 -80854717 + L2 LINE L2 2200 3272 0 270 341 179 8 chr9 37007912 37008035 -80854592 - MIR3 SINE MIR -48 160 17 532 195 41 179 chr9 37008299 37008335 -80854292 - MIR SINE MIR -42 220 181 4781 39 15 5 chr9 37008335 37008920 -80853707 - LTR10C LTR ERV1 0 591 1 532 195 41 179 chr9 37008920 37008961 -80853666 - MIR SINE MIR -81 181 136 632 225 8 0 chr9 37008961 37009081 -80853546 + FLAM_A SINE Alu 1 121 -12 1834 142 3 20 chr9 37009087 37009390 -80853237 + AluJb SINE Alu 2 299 -13 532 195 41 179 chr9 37009390 37009550 -80853077 - MIR SINE MIR -131 131 9 234 239 0 0 chr9 37010418 37010464 -80852163 + GA-rich Low_complexity Low_complexity 2 47 0 1525 181 62 120 chr9 37014033 37014110 -80848517 - MLT1D LTR MaLR 0 505 425 1415 165 24 62 chr9 37014110 37014401 -80848226 + AluJb SINE Alu 3 282 -30 1525 181 62 120 chr9 37014401 37014636 -80847991 - MLT1D LTR MaLR -80 425 178 2242 61 0 10 chr9 37014636 37014930 -80847697 - AluY SINE Alu -8 303 13 2222 99 3 7 chr9 37014930 37015234 -80847393 - AluSp SINE Alu -10 303 1 1525 181 62 120 chr9 37015234 37015322 -80847305 - MLT1D LTR MaLR -326 179 139 1637 148 31 21 chr9 37015322 37015613 -80847014 + AluSx SINE Alu 1 294 -18 1525 181 62 120 chr9 37015613 37015741 -80846886 - MLT1D LTR MaLR -366 139 5 220 292 231 36 chr9 37016084 37016276 -80846351 + L2 LINE L2 2264 2417 -897 1860 120 33 0 chr9 37016276 37016577 -80846050 + AluSx SINE Alu 1 310 0 220 292 231 36 chr9 37016577 37016691 -80845936 + L2 LINE L2 2417 2631 -683 1486 186 44 24 chr9 37016773 37017068 -80845559 + 7SLRNA srpRNA srpRNA 1 301 -19 1696 156 0 17 chr9 37017224 37017512 -80845115 - AluJo SINE Alu -19 293 11 2250 76 0 10 chr9 37017569 37017870 -80844757 + AluY SINE Alu 1 298 -13 395 234 92 46 chr9 37017888 37018055 -80844572 + L1ME4a LINE L1 5894 6075 -46 1699 181 0 3 chr9 37018055 37018347 -80844280 - AluJb SINE Alu -21 291 1 395 234 92 46 chr9 37018347 37018397 -80844230 + L1ME4a LINE L1 6075 6121 0 2045 52 99 0 chr9 37019419 37019691 -80842936 - AluY SINE Alu -12 299 1 192 253 108 48 chr9 37019944 37020027 -80842600 - MIR3 SINE MIR -39 169 82 6261 109 25 20 chr9 37020031 37020101 -80842526 + L1PB1 LINE L1 4924 4992 -1159 1830 122 20 17 chr9 37020101 37020397 -80842230 + AluSx SINE Alu 1 297 -15 6261 109 25 20 chr9 37020397 37021184 -80841443 + L1PB1 LINE L1 4992 5788 -363 1719 114 0 0 chr9 37021184 37021429 -80841198 + AluSx SINE Alu 63 307 -5 6261 109 25 20 chr9 37021429 37021794 -80840833 + L1PB1 LINE L1 5788 6150 -1 5662 148 86 21 chr9 37021956 37022424 -80840203 + Ricksha_b DNA DNA 69 506 -2760 2102 98 7 0 chr9 37022424 37022720 -80839907 - AluSp SINE Alu -15 298 1 5662 148 86 21 chr9 37022720 37023412 -80839215 + Ricksha_b DNA DNA 506 1654 -12 31 68 0 0 chr9 37023541 37023600 -80839027 + AT_rich Low_complexity Low_complexity 1 59 0 717 243 68 9 chr9 37025211 37025433 -80837194 + L1ME1 LINE L1 5927 6161 -5 2138 98 0 16 chr9 37025995 37026300 -80836327 + AluY SINE Alu 12 311 0 1776 169 7 0 chr9 37027361 37027657 -80834970 + AluJo SINE Alu 8 305 -7 469 270 9 17 chr9 37029264 37029379 -80833248 - MER81 DNA DNA 0 114 1 262 211 0 0 chr9 37031237 37031289 -80831338 - Charlie1 DNA MER1_type 0 2761 2710 686 133 80 18 chr9 37031918 37032031 -80830596 + FLAM_C SINE Alu 3 122 -21 2136 116 0 0 chr9 37032386 37032680 -80829947 - AluSx SINE Alu -18 294 1 1862 85 0 0 chr9 37033411 37033658 -80828969 + AluSx SINE Alu 56 302 -10 775 155 0 0 chr9 37033661 37033777 -80828850 + AluJo/FLAM SINE Alu 1 116 -186 1326 138 165 8 chr9 37033777 37034038 -80828589 - AluYb8 SINE Alu -16 302 1 183 80 0 0 chr9 37034094 37034119 -80828508 + (A)n Simple_repeat Simple_repeat 1 25 0 840 264 50 0 chr9 37036213 37036433 -80826194 + MIR SINE MIR 5 235 -27 2447 92 3 0 chr9 37036957 37037263 -80825364 - AluSq SINE Alu -5 308 2 445 172 32 11 chr9 37037379 37037472 -80825155 - L2 LINE L2 0 3313 3219 2075 111 7 14 chr9 37037951 37038248 -80824379 - AluSx SINE Alu -17 295 1 219 363 35 9 chr9 37038524 37038637 -80823990 + L3b LINE CR1 1115 1230 -353 198 0 0 0 chr9 37038806 37038828 -80823799 + (T)n Simple_repeat Simple_repeat 1 22 0 23 0 0 0 chr9 37039494 37039517 -80823110 + GC_rich Low_complexity Low_complexity 1 23 0 211 256 0 0 chr9 37040059 37040098 -80822529 + (CGG)n Simple_repeat Simple_repeat 2 40 0 275 320 0 0 chr9 37042053 37042131 -80820496 - MIR SINE MIR -64 144 67 998 137 0 82 chr9 37045267 37045450 -80817177 - FRAM SINE Alu -16 160 1 1712 207 25 103 chr9 37047776 37047953 -80814674 + L1MB8 LINE L1 4897 5086 -1080 1677 84 14 0 chr9 37047953 37048168 -80814459 + AluSg/x SINE Alu 84 301 -9 1712 207 25 103 chr9 37048168 37048314 -80814313 + L1MB8 LINE L1 5086 5242 -924 2428 65 7 3 chr9 37048314 37048624 -80814003 + AluY SINE Alu 1 311 0 1712 207 25 103 chr9 37048624 37048646 -80813981 + L1MB8 LINE L1 5242 5264 -902 1566 159 10 54 chr9 37048646 37048941 -80813686 + AluJo SINE Alu 12 293 -19 1712 207 25 103 chr9 37048941 37049058 -80813569 + L1MB8 LINE L1 5264 5388 -778 2030 144 0 13 chr9 37049058 37049363 -80813264 + AluJb SINE Alu 1 301 -11 1712 207 25 103 chr9 37049363 37049503 -80813124 + L1MB8 LINE L1 5388 5537 -629 2127 121 0 0 chr9 37049503 37049783 -80812844 + AluSx SINE Alu 17 296 -16 2220 134 0 0 chr9 37049793 37050100 -80812527 + AluSx SINE Alu 1 307 -5 1712 207 25 103 chr9 37050100 37050259 -80812368 + L1MB8 LINE L1 5546 5580 -586 2505 82 0 0 chr9 37050259 37050562 -80812065 + AluY SINE Alu 1 303 -8 1712 207 25 103 chr9 37050562 37050731 -80811896 + L1MB8 LINE L1 5580 5760 -406 581 37 24 12 chr9 37050779 37050861 -80811766 - AluSg/x SINE Alu -19 291 209 216 0 0 0 chr9 37050884 37050908 -80811719 + (A)n Simple_repeat Simple_repeat 1 24 0 1944 114 23 4 chr9 37050924 37051220 -80811407 + AluSx SINE Alu 14 314 0 4194 165 62 34 chr9 37051321 37051415 -80811212 + L1MB7 LINE L1 5081 5171 -1013 2618 66 0 0 chr9 37051415 37051719 -80810908 + AluSc SINE Alu 1 304 -5 4194 165 62 34 chr9 37051719 37051872 -80810755 + L1MB7 LINE L1 5171 5318 -866 1943 167 3 3 chr9 37051872 37052177 -80810450 + AluJo SINE Alu 1 305 -7 4194 165 62 34 chr9 37052177 37053005 -80809622 + L1MB7 LINE L1 5318 6165 -19 1527 181 42 11 chr9 37053015 37053368 -80809259 + L1MB8 LINE L1 5815 6178 0 827 174 0 7 chr9 37053375 37053519 -80809108 + FLAM_C SINE Alu 1 143 0 927 153 213 59 chr9 37053579 37053833 -80808794 - AluJo SINE Alu -19 293 1 2420 105 0 0 chr9 37054238 37054542 -80808085 - AluSx SINE Alu -8 304 1 1476 188 79 0 chr9 37054617 37054883 -80807744 + AluJo SINE Alu 1 287 -25 868 121 0 45 chr9 37055759 37055891 -80806736 - FLAM_C SINE Alu -17 126 1 305 274 14 0 chr9 37056634 37056707 -80805920 + MIR SINE MIR 30 103 -105 311 247 54 21 chr9 37056926 37057019 -80805608 + MIR SINE MIR 30 125 -83 1989 99 37 0 chr9 37062778 37063051 -80799576 + AluSx SINE Alu 1 283 -29 188 250 91 45 chr9 37063054 37063142 -80799485 - MER5A DNA MER1_type -66 123 32 235 204 330 10 chr9 37063847 37063950 -80798677 + MIR SINE MIR 16 151 -111 2289 110 0 0 chr9 37064074 37064374 -80798253 + AluSx SINE Alu 1 300 -12 2007 149 0 3 chr9 37064375 37064671 -80797956 + AluSx SINE Alu 2 296 -16 542 231 176 52 chr9 37064672 37065137 -80797490 + L2 LINE L2 2740 3263 -50 245 313 30 30 chr9 37065204 37065370 -80797257 + L2 LINE L2 2554 2719 -595 976 114 23 0 chr9 37065375 37065506 -80797121 - AluJb SINE Alu -178 134 1 2308 104 0 0 chr9 37065560 37065858 -80796769 + AluSg SINE Alu 1 298 -12 2097 123 7 3 chr9 37066146 37066439 -80796188 - AluSc SINE Alu -15 294 1 351 354 70 0 chr9 37066444 37066602 -80796025 + L2 LINE L2 3104 3272 0 212 224 60 30 chr9 37070853 37070920 -80791707 - MIR3 SINE MIR -41 167 99 189 0 0 0 chr9 37071136 37071157 -80791470 + (CAA)n Simple_repeat Simple_repeat 1 21 0 247 261 15 0 chr9 37071586 37071651 -80790976 + (CA)n Simple_repeat Simple_repeat 1 66 0 32 0 0 0 chr9 37071910 37071942 -80790685 + AT_rich Low_complexity Low_complexity 1 32 0 836 143 0 0 chr9 37072459 37072585 -80790042 + FLAM_C SINE Alu 1 126 -7 216 97 0 0 chr9 37072588 37072619 -80790008 + (CATA)n Simple_repeat Simple_repeat 2 32 0 1835 169 10 16 chr9 37074087 37074401 -80788226 + AluJb SINE Alu 1 312 0 1946 143 7 3 chr9 37075159 37075453 -80787174 + AluSx SINE Alu 12 306 -6 2264 97 0 31 chr9 37075660 37075980 -80786647 + AluSq SINE Alu 1 310 -3 500 196 9 27 chr9 37075989 37076101 -80786526 - L1ME LINE L1 -502 5668 5559 1136 190 111 67 chr9 37076104 37076535 -80786092 + LTR7 LTR ERV1 1 450 0 1737 199 3 6 chr9 37076781 37077092 -80785535 - AluJo SINE Alu -2 310 1 304 211 67 48 chr9 37077244 37077348 -80785279 + L1MCa LINE L1 1975 2080 -4346 2060 140 0 7 chr9 37077352 37077644 -80784983 - AluSx SINE Alu -22 290 1 2401 102 0 0 chr9 37077658 37077961 -80784666 - AluSg SINE Alu -7 303 1 4867 97 15 0 chr9 37078000 37078681 -80783946 - LTR8 LTR ERV1 0 691 1 1129 170 11 6 chr9 37078811 37078993 -80783634 + AluJo SINE Alu 2 184 -128 2308 56 42 14 chr9 37079289 37079575 -80783052 - AluY SINE Alu -15 296 3 594 173 0 0 chr9 37079584 37079688 -80782939 + Cheshire DNA MER1_type 795 898 -1522 1648 138 59 62 chr9 37079783 37079984 -80782643 - AluJb SINE Alu -6 306 105 2286 126 0 0 chr9 37079984 37080286 -80782341 + AluSx SINE Alu 1 302 -10 1648 138 59 62 chr9 37080286 37080389 -80782238 - AluJb SINE Alu -207 105 3 1436 184 33 21 chr9 37080803 37080834 -80781793 + Cheshire DNA MER1_type 896 925 -1495 2214 97 0 14 chr9 37080834 37081122 -80781505 + AluSx SINE Alu 20 303 -9 1436 184 33 21 chr9 37081122 37081427 -80781200 + Cheshire DNA MER1_type 925 1236 -1184 594 124 21 10 chr9 37081430 37081527 -80781100 + MER4A LTR ERV1 1 98 -566 1394 188 6 38 chr9 37081527 37081884 -80780743 + MER4A LTR ERV1 261 664 0 655 193 86 49 chr9 37081886 37082355 -80780272 + MER4A-int LTR ERV1 1 624 -5974 279 0 0 0 chr9 37082356 37082387 -80780240 + (TG)n Simple_repeat Simple_repeat 2 32 0 420 347 0 47 chr9 37082442 37082655 -80779972 + MER4A-int LTR ERV1 374 576 -6182 4436 100 170 146 chr9 37082766 37083287 -80779340 + MER4A-int LTR ERV1 499 1006 -5592 2321 102 0 13 chr9 37083287 37083601 -80779026 - AluSg SINE Alu 0 310 1 4436 100 170 146 chr9 37083601 37084181 -80778446 + MER4A-int LTR ERV1 1006 1571 -5027 2402 89 3 0 chr9 37084181 37084484 -80778143 + AluSp SINE Alu 1 304 -9 4436 100 170 146 chr9 37084484 37085109 -80777518 + MER4A-int LTR ERV1 1571 2180 -4418 2295 95 3 3 chr9 37085109 37085404 -80777223 + AluSq SINE Alu 1 295 -18 4436 100 170 146 chr9 37085404 37085857 -80776770 + MER4A-int LTR ERV1 2180 3320 -3278 * 15203 103 55 46 chr9 37085853 37086440 -80776187 + MER4A-int LTR ERV1 3916 4497 -2101 2707 7 0 0 chr9 37086440 37086740 -80775887 - AluY SINE Alu -11 300 1 15203 103 55 46 chr9 37086740 37087781 -80774846 + MER4A-int LTR ERV1 4497 5528 -1070 2158 85 7 7 chr9 37087781 37088076 -80774551 + AluY SINE Alu 1 295 -16 15203 103 55 46 chr9 37088076 37089107 -80773520 + MER4A-int LTR ERV1 5528 6598 0 542 134 31 21 chr9 37089108 37089205 -80773422 + MER4A LTR ERV1 1 98 -566 1474 151 3 26 chr9 37089205 37089496 -80773131 + MER4A LTR ERV1 261 603 -61 300 71 0 0 chr9 37089491 37089533 -80773094 - MER58 DNA MER1_type -80 2340 2299 * 1633 143 61 14 chr9 37089607 37089887 -80772740 + AluSx SINE Alu 1 293 -19 355 302 128 27 chr9 37089887 37090145 -80772482 - L2 LINE L2 -112 3201 2918 1994 106 0 0 chr9 37090146 37090420 -80772207 + AluSg SINE Alu 1 274 -36 1392 174 0 60 chr9 37090651 37090950 -80771677 - AluJo SINE Alu -11 301 21 569 119 12 0 chr9 37090952 37091036 -80771591 + MER67A LTR ERV1 100 184 -359 383 114 0 100 chr9 37091028 37091098 -80771529 + AluJo/FLAM SINE Alu 64 118 -184 * 1454 148 0 17 chr9 37091101 37091338 -80771289 + AluSx SINE Alu 1 233 -79 345 87 0 0 chr9 37091338 37091384 -80771243 - HUERS-P1 LTR ERV1 -4268 1995 1950 310 176 118 47 chr9 37091387 37091472 -80771155 - HUERS-P1 LTR ERV1 -4211 1735 1645 254 263 0 18 chr9 37091474 37091531 -80771096 - tRNA-Glu-GAG tRNA tRNA -13 62 7 3459 128 64 15 chr9 37091538 37091967 -80770660 - HUERS-P1 LTR ERV1 -4367 1579 1172 1991 128 0 3 chr9 37091967 37092265 -80770362 - AluSg SINE Alu -9 301 5 3459 128 64 15 chr9 37092265 37093220 -80769407 - HUERS-P1 LTR ERV1 -4774 1172 2 1063 86 0 49 chr9 37093305 37093467 -80769160 - MER41A LTR ERV1 0 554 401 839 130 8 0 chr9 37093468 37093599 -80769028 - AluJb SINE Alu -12 300 169 7323 130 65 23 chr9 37093602 37093696 -80768931 + MER52C LTR ERV1 1 90 -1188 2289 91 0 0 chr9 37093696 37094005 -80768622 - AluY SINE Alu -2 309 1 7323 130 65 23 chr9 37094005 37095134 -80767493 + MER52C LTR ERV1 90 1276 -2 3273 130 92 2 chr9 37095136 37095659 -80766968 + MER52C-int LTR ERV1 2 571 -6520 6562 166 37 15 chr9 37095798 37097138 -80765489 + MER52C-int LTR ERV1 1761 3204 -3887 3743 163 26 22 chr9 37097157 37097840 -80764787 + LTR25-int LTR ERV1 807 1492 -5599 1444 194 36 91 chr9 37097945 37098214 -80764413 + LTR25-int LTR ERV1 1213 1495 -4091 2157 84 0 3 chr9 37098214 37098525 -80764102 + AluY SINE Alu 1 310 0 1444 194 36 91 chr9 37098525 37098646 -80763981 + LTR25-int LTR ERV1 1495 1621 -3965 2264 104 0 3 chr9 37098646 37098955 -80763672 + AluSx SINE Alu 5 312 0 1444 194 36 91 chr9 37098955 37098973 -80763654 + LTR25-int LTR ERV1 1621 1638 -3948 2063 140 0 3 chr9 37098973 37099281 -80763346 + AluSx SINE Alu 1 307 -5 1444 194 36 91 chr9 37099281 37099340 -80763287 + LTR25-int LTR ERV1 1638 1938 -3648 * 3667 134 105 29 chr9 37099332 37100034 -80762593 + LTR25-int LTR ERV1 592 1347 -6469 263 150 17 17 chr9 37100020 37100080 -80762547 + LTR25-int LTR ERV1 1051 1110 -7010 * 299 135 19 0 chr9 37100077 37100129 -80762498 + LTR25-int LTR ERV1 4622 4674 -2322 1712 176 31 6 chr9 37100461 37100793 -80761834 + LTR25-int LTR ERV1 3269 3591 -3405 198 0 0 0 chr9 37100793 37100815 -80761812 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1712 176 31 6 chr9 37100815 37100851 -80761776 + LTR25-int LTR ERV1 3591 4954 -2042 29 0 0 0 chr9 37100866 37100895 -80761732 + AT_rich Low_complexity Low_complexity 1 29 0 628 201 50 60 chr9 37100896 37101095 -80761532 + L1MA2 LINE L1 6102 6298 -6 24 67 0 0 chr9 37101418 37101463 -80761164 + AT_rich Low_complexity Low_complexity 1 45 0 1996 135 0 0 chr9 37101705 37102002 -80760625 + AluSx SINE Alu 1 297 -15 263 274 84 95 chr9 37104624 37104898 -80757729 + L2 LINE L2 2985 3255 -17 2361 70 7 0 chr9 37107481 37107783 -80754844 + AluSg SINE Alu 3 306 -4 1528 119 107 0 chr9 37107799 37108090 -80754537 + AluSx SINE Alu 14 330 0 4469 159 71 56 chr9 37108191 37108285 -80754342 + L1MB7 LINE L1 5081 5172 -1012 2471 63 0 0 chr9 37108285 37108587 -80754040 + AluSc SINE Alu 1 302 -7 4469 159 71 56 chr9 37108587 37108740 -80753887 + L1MB7 LINE L1 5172 5321 -863 1784 157 3 3 chr9 37108740 37109027 -80753600 + AluJo SINE Alu 1 287 -25 4469 159 71 56 chr9 37109027 37109873 -80752754 + L1MB7 LINE L1 5321 6165 -19 1671 176 42 11 chr9 37109883 37110236 -80752391 + L1MB8 LINE L1 5815 6178 0 728 179 0 21 chr9 37110244 37110389 -80752238 + FLAM_C SINE Alu 2 143 0 834 158 217 63 chr9 37110447 37110700 -80751927 - AluJb SINE Alu -9 293 2 2254 106 0 0 chr9 37111106 37111409 -80751218 - AluSx SINE Alu -9 303 1 1338 188 79 0 chr9 37111484 37111750 -80750877 + AluJo SINE Alu 1 287 -25 804 121 0 45 chr9 37112626 37112758 -80749869 - FLAM_C SINE Alu -17 126 1 2140 107 3 0 chr9 37115059 37115357 -80747270 + AluSc SINE Alu 1 299 -10 1981 168 143 32 chr9 37115357 37116158 -80746469 + MER52C-int LTR ERV1 2270 4690 -1256 378 58 39 0 chr9 37116162 37116214 -80746413 + MER52C-int LTR ERV1 5976 6029 -1176 * 1297 128 20 0 chr9 37116211 37116406 -80746221 + MER52C-int LTR ERV1 6892 7090 -1 1165 121 12 0 chr9 37116407 37116580 -80746047 + MER52C LTR ERV1 1 175 -1103 1505 164 0 0 chr9 37116591 37116829 -80745798 - AluSq SINE Alu -75 238 1 883 73 16 0 chr9 37116829 37116953 -80745674 - MER4-int LTR ERV1 -4171 2427 2302 1979 119 38 13 chr9 37116953 37117327 -80745300 - LTR7 LTR ERV1 0 450 1 3411 127 11 26 chr9 37117328 37117893 -80744734 - HERVH LTR ERV1 -1 7712 7157 2177 93 3 0 chr9 37121038 37121338 -80741289 - AluSx SINE Alu -11 301 1 1809 141 6 33 chr9 37121679 37121860 -80740767 - L1MC3 LINE L1 -17 7768 7599 2221 83 7 3 chr9 37121860 37122160 -80740467 - AluSp SINE Alu -12 301 1 1809 141 6 33 chr9 37122160 37122311 -80740316 - L1MC3 LINE L1 -186 7599 7445 2323 75 0 0 chr9 37122311 37122605 -80740022 - AluY SINE Alu -16 295 2 553 281 0 0 chr9 37122690 37122804 -80739823 + Charlie8 DNA MER1_type 152 265 -2152 897 183 0 18 chr9 37122828 37122997 -80739630 + FRAM SINE Alu 2 167 -9 1702 166 7 7 chr9 37123325 37123621 -80739006 - AluJb SINE Alu -16 296 1 1650 130 0 4 chr9 37123726 37123973 -80738654 - AluSq SINE Alu -67 246 1 908 106 15 0 chr9 37124194 37124326 -80738301 - AluJo SINE Alu -178 134 1 21 36 0 0 chr9 37124453 37124481 -80738146 + AT_rich Low_complexity Low_complexity 1 28 0 189 107 0 0 chr9 37124554 37124582 -80738045 + (T)n Simple_repeat Simple_repeat 1 28 0 470 111 0 0 chr9 37124583 37124646 -80737981 - MLT1A2 LTR MaLR -46 328 266 1970 105 41 7 chr9 37126111 37126406 -80736221 - AluSg SINE Alu -3 307 3 1983 92 0 41 chr9 37126450 37126771 -80735856 - AluSg SINE Alu 0 309 1 271 231 0 0 chr9 37126772 37126824 -80735803 + HERVH LTR ERV1 3503 3554 -4159 1223 252 0 0 chr9 37126889 37127167 -80735460 + HERVH LTR ERV1 4416 4693 -3020 * 4082 111 3 2 chr9 37127161 37127764 -80734863 + HERVH LTR ERV1 5400 6003 -1710 28345 46 1 2 chr9 37127864 37131962 -80730665 - L1PA5 LINE L1 -141 6013 1922 10232 146 10 15 chr9 37132064 37134321 -80728306 - HERVH LTR ERV1 -4207 3506 830 1141 214 31 25 chr9 37134389 37134814 -80727813 - HERVH LTR ERV1 -7254 459 1 2146 99 42 6 chr9 37134814 37135190 -80727437 - LTR7 LTR ERV1 0 450 1 2778 90 60 100 chr9 37135190 37135265 -80727362 - MER4-int LTR ERV1 -4292 2306 2230 4865 128 28 4 chr9 37135265 37136026 -80726601 + MER4E LTR ERV1 1 779 0 2778 90 60 100 chr9 37136026 37136228 -80726399 - MER4-int LTR ERV1 -4368 2230 2022 2139 128 7 0 chr9 37136228 37136526 -80726101 - AluSq SINE Alu -13 300 1 2778 90 60 100 chr9 37136526 37136827 -80725800 - MER4-int LTR ERV1 -4576 2022 1748 5380 119 81 37 chr9 37136831 37137430 -80725197 - MER4-int LTR ERV1 -5599 1159 507 1663 201 7 3 chr9 37137430 37137718 -80724909 - AluSx SINE Alu -23 289 1 5380 119 81 37 chr9 37137718 37138007 -80724620 - MER4-int LTR ERV1 -6251 507 232 1191 108 12 0 chr9 37138007 37138173 -80724454 - AluSg/x SINE Alu -15 295 128 535 127 0 0 chr9 37138173 37138252 -80724375 - AluJ/FLAM SINE Alu -232 80 2 298 70 0 23 chr9 37138252 37138295 -80724332 - MER4-int LTR ERV1 -6515 243 202 219 69 0 0 chr9 37138297 37138326 -80724301 + (A)n Simple_repeat Simple_repeat 1 29 0 1240 227 44 61 chr9 37138333 37138578 -80724049 - MER4-int LTR ERV1 -4129 2202 1963 2317 87 0 13 chr9 37138578 37138878 -80723749 - AluSg SINE Alu -14 296 1 1240 227 44 61 chr9 37138878 37138993 -80723634 - MER4-int LTR ERV1 -4368 1963 1848 2380 72 3 16 chr9 37138996 37139303 -80723324 - AluSg SINE Alu -7 303 1 306 177 0 62 chr9 37139362 37139458 -80723169 - MER4-int LTR ERV1 -5758 840 751 2729 115 76 29 chr9 37139495 37139786 -80722841 - MER4-int LTR ERV1 -6009 589 313 333 0 0 0 chr9 37139786 37139823 -80722804 + (TAA)n Simple_repeat Simple_repeat 2 38 0 2729 115 76 29 chr9 37139823 37140026 -80722601 - MER4-int LTR ERV1 -6285 313 1 323 330 0 0 chr9 37140026 37140114 -80722513 - L2 LINE L2 -2 3311 3224 180 0 0 0 chr9 37141451 37141471 -80721156 + (TTTTTA)n Simple_repeat Simple_repeat 3 22 0 2181 140 0 0 chr9 37142587 37142895 -80719732 - AluSx SINE Alu -3 309 2 730 262 118 54 chr9 37143512 37143901 -80718726 + L3 LINE CR1 1004 1417 -160 2452 65 13 10 chr9 37143990 37144296 -80718331 - AluSg SINE Alu -3 307 1 1761 148 7 7 chr9 37144773 37145043 -80717584 + AluSx SINE Alu 21 290 -22 338 191 76 19 chr9 37145053 37145158 -80717469 - L1ME4a LINE L1 -20 6101 5991 718 194 0 8 chr9 37145170 37145294 -80717333 - FLAM_A SINE Alu -7 126 4 1186 139 106 14 chr9 37145596 37145724 -80716903 - MER30 DNA MER1_type 0 230 74 2147 98 34 0 chr9 37145724 37146021 -80716606 - AluY SINE Alu -4 307 1 1186 139 106 14 chr9 37146021 37146100 -80716527 - MER30 DNA MER1_type -156 74 4 426 242 65 17 chr9 37146110 37146241 -80716386 - L1ME4a LINE L1 -297 5824 5701 2122 98 0 54 chr9 37146241 37146557 -80716070 - AluSg SINE Alu -11 299 1 426 242 65 17 chr9 37146557 37146576 -80716051 - L1ME4a LINE L1 -420 5701 5684 1874 176 3 0 chr9 37146576 37146872 -80715755 - AluJo SINE Alu -15 297 1 426 242 65 17 chr9 37146872 37146887 -80715740 - L1ME4a LINE L1 -437 5684 5658 867 130 35 59 chr9 37146889 37147058 -80715569 - L1PA15 LINE L1 0 6165 6001 1604 148 111 7 chr9 37147358 37147628 -80714999 - AluJb SINE Alu -14 298 1 1699 159 28 14 chr9 37147723 37148006 -80714621 + AluJo SINE Alu 1 287 -25 2338 112 0 0 chr9 37148817 37149120 -80713507 - AluSx SINE Alu -9 303 1 1682 165 18 28 chr9 37149135 37149420 -80713207 - AluJo SINE Alu -24 288 7 1620 211 0 7 chr9 37149465 37149763 -80712864 - AluJb SINE Alu -16 296 1 2213 113 3 0 chr9 37149765 37150056 -80712571 - AluSq SINE Alu -21 292 1 1698 170 3 14 chr9 37150066 37150354 -80712273 - AluJo SINE Alu -23 289 5 359 260 32 8 chr9 37150363 37150486 -80712141 - L1ME3A LINE L1 -281 5889 5764 211 281 148 39 chr9 37150530 37150658 -80711969 + L3b LINE CR1 1324 1465 -118 24 0 0 0 chr9 37150673 37150697 -80711930 + AT_rich Low_complexity Low_complexity 1 24 0 803 121 0 53 chr9 37150697 37150829 -80711798 - FLAM_C SINE Alu -18 125 1 1395 188 36 10 chr9 37150836 37151139 -80711488 - L1MA4 LINE L1 0 6300 5990 2134 124 0 0 chr9 37152080 37152378 -80710249 - AluSx SINE Alu -14 298 1 210 370 22 7 chr9 37152449 37152584 -80710043 + MIR SINE MIR 5 141 -121 1571 149 100 0 chr9 37152826 37152979 -80709648 - AluY SINE Alu -24 287 151 1471 131 4 18 chr9 37152979 37153208 -80709419 - AluSg/x SINE Alu -14 298 73 1898 62 0 9 chr9 37153208 37153434 -80709193 - AluY SINE Alu -17 294 70 1571 149 100 0 chr9 37153434 37153540 -80709087 - AluY SINE Alu -159 152 1 1048 209 47 5 chr9 37153542 37153753 -80708874 - AluJo SINE Alu -92 220 1 2167 129 0 29 chr9 37154389 37154700 -80707927 + AluSx SINE Alu 1 302 -10 239 261 23 11 chr9 37154803 37154891 -80707736 - L2 LINE L2 -1903 1411 1323 2187 120 0 0 chr9 37154920 37155235 -80707392 + AluSx SINE Alu 1 312 0 341 313 70 0 chr9 37155465 37155593 -80707034 - L2 LINE L2 -257 3056 2920 559 57 0 0 chr9 37155667 37155737 -80706890 - AluS SINE Alu -235 77 8 1245 133 9 44 chr9 37155737 37155962 -80706665 + AluSq SINE Alu 86 302 -11 275 348 28 21 chr9 37156316 37156457 -80706170 - L2 LINE L2 -9 3263 3122 541 146 5 160 chr9 37156809 37156882 -80705745 - MER104 DNA MER2_type -1722 176 93 1825 153 48 3 chr9 37156882 37157176 -80705451 + AluJb SINE Alu 2 308 -4 541 146 5 160 chr9 37157176 37157272 -80705355 - MER104 DNA MER2_type -1805 93 42 2168 103 17 0 chr9 37157272 37157564 -80705063 + AluSx SINE Alu 10 306 -6 541 146 5 160 chr9 37157564 37157599 -80705028 - MER104 DNA MER2_type -1856 42 3 227 245 283 0 chr9 37157602 37157708 -80704919 - MIR SINE MIR -6 256 121 1818 167 0 23 chr9 37158163 37158468 -80704159 + AluJb SINE Alu 1 298 -14 195 42 0 0 chr9 37159386 37159410 -80703217 + (TTTTTG)n Simple_repeat Simple_repeat 5 28 0 1534 196 16 19 chr9 37159471 37159783 -80702844 + AluJb SINE Alu 1 311 -1 260 211 78 33 chr9 37160049 37160139 -80702488 + MIR SINE MIR 68 161 -101 2109 127 16 0 chr9 37160211 37160518 -80702109 + AluSx SINE Alu 1 312 0 852 197 27 69 chr9 37160535 37160723 -80701904 + LTR8A LTR ERV1 548 727 0 204 67 0 0 chr9 37161095 37161125 -80701502 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 6383 110 43 22 chr9 37161127 37163421 -80699206 - SVA Other Other -518 1383 3 306 220 30 0 chr9 37163437 37163537 -80699090 + GA-rich Low_complexity Low_complexity 1 103 0 1915 160 10 3 chr9 37164294 37164601 -80698026 + AluSx SINE Alu 1 309 -3 1389 148 0 5 chr9 37164610 37164826 -80697801 + MER4D LTR ERV1 10 224 -679 1432 160 12 4 chr9 37164852 37165096 -80697531 + MER4D LTR ERV1 441 686 -217 2566 141 7 32 chr9 37165103 37165506 -80697121 - LTR9 LTR ERV1 0 612 220 35343 118 93 90 chr9 37165588 37168322 -80694305 - HUERS-P3b LTR ERV1 -473 6945 4222 2389 99 0 3 chr9 37168322 37168626 -80694001 - AluSp SINE Alu -10 303 1 35343 118 93 90 chr9 37168626 37169612 -80693015 - HUERS-P3b LTR ERV1 -3196 4222 3241 2165 105 27 0 chr9 37169612 37169907 -80692720 - AluSx SINE Alu -9 303 1 35343 118 93 90 chr9 37169907 37172022 -80690605 - HUERS-P3b LTR ERV1 -4177 3241 1080 2366 89 0 35 chr9 37172022 37172335 -80690292 + AluSg SINE Alu 1 302 -8 35343 118 93 90 chr9 37172335 37173398 -80689229 - HUERS-P3b LTR ERV1 -6338 1080 22 3590 123 69 22 chr9 37173425 37174004 -80688623 - LTR9 LTR ERV1 -6 606 1 1412 87 78 5 chr9 37174012 37174218 -80688409 + MER4D LTR ERV1 652 872 0 242 190 52 35 chr9 37174489 37174547 -80688080 - 7SK RNA RNA -118 75 17 186 189 0 0 chr9 37174621 37174658 -80687969 + (CATATA)n Simple_repeat Simple_repeat 2 38 0 1818 186 0 0 chr9 37175420 37175726 -80686901 - AluJo SINE Alu -6 306 1 2087 148 0 0 chr9 37175860 37176163 -80686464 - AluSx SINE Alu -9 303 1 2077 135 130 18 chr9 37176230 37176615 -80686012 + MSTA LTR MaLR 1 428 0 2200 155 58 22 chr9 37176776 37177189 -80685438 + MSTA LTR MaLR 1 428 0 2018 142 3 0 chr9 37177189 37177512 -80685115 + MSTA-int LTR MaLR 1 324 -1327 29978 44 7 6 chr9 37177516 37181449 -80681178 - L1PA5 LINE L1 0 6154 2214 2515 70 0 0 chr9 37181449 37181747 -80680880 - AluY SINE Alu -13 298 1 29978 44 7 6 chr9 37181747 37182264 -80680363 - L1PA5 LINE L1 -3940 2214 1699 7691 168 27 8 chr9 37182266 37183579 -80679048 + MSTA-int LTR MaLR 315 1651 0 2277 136 97 0 chr9 37183579 37183969 -80678658 + MSTA LTR MaLR 1 428 0 2567 172 8 30 chr9 37184013 37184537 -80678090 - L1MB7 LINE L1 -1 6183 5672 1698 153 6 53 chr9 37184557 37184878 -80677749 + AluJb SINE Alu 1 306 -6 3313 171 117 60 chr9 37184878 37185254 -80677373 - L1MB5 LINE L1 -9 6165 5812 2345 96 0 0 chr9 37185254 37185546 -80677081 + AluSc SINE Alu 6 297 -12 3313 171 117 60 chr9 37185546 37185913 -80676714 - L1MB5 LINE L1 -362 5812 5467 1472 161 0 117 chr9 37185913 37186134 -80676493 - AluJo SINE Alu 0 302 133 324 0 0 0 chr9 37186134 37186170 -80676457 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 1472 161 0 117 chr9 37186170 37186290 -80676337 - AluJo SINE Alu -169 133 1 3313 171 117 60 chr9 37186290 37186662 -80675965 - L1MB5 LINE L1 -707 5467 4964 2765 89 38 33 chr9 37187066 37187492 -80675135 - MSTA LTR MaLR 0 428 1 211 71 0 0 chr9 37187711 37187739 -80674888 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 2013 136 4 0 chr9 37187739 37188019 -80674608 - AluSx SINE Alu -1 308 1 2050 136 3 3 chr9 37188046 37188333 -80674294 - AluSx SINE Alu -25 287 1 785 175 0 0 chr9 37188615 37188741 -80673886 + AluJ SINE Alu 2 127 -175 891 228 0 0 chr9 37188904 37189097 -80673530 - MER3 DNA MER1_type -5 204 12 2280 105 0 0 chr9 37189186 37189480 -80673147 - AluSx SINE Alu -18 294 1 652 177 15 23 chr9 37189559 37189689 -80672938 - FLAM_A SINE Alu -3 130 2 675 298 107 9 chr9 37190056 37190382 -80672245 - L1MC4a LINE L1 -1941 5867 5510 538 165 0 0 chr9 37190468 37190559 -80672068 + AluJ SINE Alu 134 224 -88 * 699 149 0 0 chr9 37190550 37190657 -80671970 - AluJb SINE Alu -201 111 5 2030 150 0 0 chr9 37190947 37191241 -80671386 + AluSx SINE Alu 1 294 -18 474 260 40 6 chr9 37191286 37191463 -80671164 + L1MEd LINE L1 19 201 -5918 416 238 143 0 chr9 37191573 37191701 -80670926 + MIR SINE MIR 47 189 -62 260 219 61 24 chr9 37191709 37191791 -80670836 - MIR SINE MIR -3 259 175 1554 197 0 51 chr9 37191793 37192168 -80670459 + MLT1A2 LTR MaLR 6 361 -13 771 257 152 75 chr9 37192198 37192802 -80669825 + L1MEd LINE L1 238 933 -5186 1981 157 3 0 chr9 37192802 37193096 -80669531 + AluSx SINE Alu 1 295 -17 771 257 152 75 chr9 37193096 37193373 -80669254 + L1MEd LINE L1 933 1187 -4932 562 224 35 0 chr9 37193542 37193658 -80668969 + L2 LINE L2 3193 3312 -1 1843 157 20 3 chr9 37193788 37194081 -80668546 + AluJb SINE Alu 9 306 -6 545 270 46 77 chr9 37194520 37194909 -80667718 + L1M4 LINE L1 3613 3989 -2157 1320 218 38 48 chr9 37194921 37195293 -80667334 + L1MDa LINE L1 45 412 -6128 750 128 192 2 chr9 37195325 37195516 -80667111 + L1MDa LINE L1 2420 2621 -3919 1085 207 90 10 chr9 37195518 37195808 -80666819 + L1MD2 LINE L1 5831 6143 -216 344 211 58 0 chr9 37195816 37195920 -80666707 + L1MD2 LINE L1 6210 6319 -40 372 236 0 115 chr9 37196241 37196338 -80666289 + L1M4 LINE L1 4012 4084 -2062 2479 52 13 3 chr9 37196338 37196644 -80665983 - AluY SINE Alu -1 310 2 372 236 0 115 chr9 37196644 37196711 -80665916 + L1M4 LINE L1 4084 4157 -1989 1587 172 90 0 chr9 37196718 37196986 -80665641 + AluJb SINE Alu 1 292 -20 24 32 0 0 chr9 37197255 37197286 -80665341 + AT_rich Low_complexity Low_complexity 1 31 0 923 262 145 0 chr9 37197403 37197651 -80664976 - AluJb SINE Alu -16 286 3 2449 90 3 0 chr9 37197693 37198005 -80664622 - AluSp SINE Alu 0 313 1 1276 129 0 0 chr9 37198421 37198592 -80664035 + AluJb SINE Alu 131 301 -11 290 246 49 0 chr9 37198883 37199005 -80663622 - L1M4 LINE L1 -1088 5058 4931 5163 105 57 5 chr9 37199107 37199961 -80662666 - L1MA3 LINE L1 0 6305 5407 1336 178 8 23 chr9 37200111 37200370 -80662257 - AluJb SINE Alu -57 255 1 2806 190 25 92 chr9 37200376 37201435 -80661192 - L1M4 LINE L1 -786 5360 4373 341 197 30 61 chr9 37201436 37201568 -80661059 - LTR48 LTR ERV1 -74 713 586 5817 143 53 6 chr9 37201573 37203558 -80659069 - L1MA4A LINE L1 -7 6296 4227 242 303 0 0 chr9 37203558 37203624 -80659003 + MER61B LTR ERV1 176 241 -184 443 136 4 1 chr9 37203624 37203702 -80658925 - L1 LINE L1 -1986 4160 4081 2179 163 5 16 chr9 37203705 37204142 -80658485 + L1 LINE L1 3664 4095 -2051 1901 156 20 0 chr9 37204153 37204455 -80658172 - AluSx SINE Alu -4 308 1 1799 254 114 2 chr9 37204462 37205048 -80657579 - L1M4b LINE L1 -5189 2020 1369 419 222 0 0 chr9 37205048 37205129 -80657498 - MER20 DNA MER1_type -48 171 91 669 168 35 28 chr9 37205129 37205272 -80657355 + MER5A DNA MER1_type 46 189 0 1637 187 42 55 chr9 37205314 37205354 -80657273 - MLT2A2 LTR ERVL 0 554 515 261 57 0 0 chr9 37205354 37205389 -80657238 + (TG)n Simple_repeat Simple_repeat 1 35 0 1637 187 42 55 chr9 37205389 37205902 -80656725 - MLT2A2 LTR ERVL -39 515 13 269 285 73 32 chr9 37206127 37206250 -80656377 + L3 LINE CR1 1346 1473 -104 240 250 0 0 chr9 37207032 37207080 -80655547 + MIR SINE MIR 93 140 -68 1933 178 0 3 chr9 37207298 37207602 -80655025 - AluJo SINE Alu -9 303 1 450 318 143 15 chr9 37207784 37208127 -80654500 - L2 LINE L2 -958 2356 1970 1803 169 13 26 chr9 37209232 37209540 -80653087 - AluJb SINE Alu -8 304 1 1843 131 62 0 chr9 37210578 37210853 -80651774 - AluSx SINE Alu -20 292 1 1193 152 52 45 chr9 37211121 37211390 -80651237 - L1MA10 LINE L1 -19 6315 6045 23 33 0 0 chr9 37212952 37212982 -80649645 + AT_rich Low_complexity Low_complexity 1 30 0 21 57 0 0 chr9 37213314 37213349 -80649278 + AT_rich Low_complexity Low_complexity 1 35 0 553 267 76 28 chr9 37213597 37213668 -80648959 - L1MC4a LINE L1 -338 5783 5717 2082 139 10 7 chr9 37213668 37213978 -80648649 - AluSx SINE Alu -1 311 1 553 267 76 28 chr9 37213978 37214253 -80648374 - L1MC4a LINE L1 -404 5717 5497 226 229 0 59 chr9 37214280 37214307 -80648320 + T-rich Low_complexity Low_complexity 4 31 -83 6712 115 27 17 chr9 37214307 37215367 -80647260 - MER11C LTR ERVK 0 1071 1 226 229 0 59 chr9 37215367 37215457 -80647170 + T-rich Low_complexity Low_complexity 31 114 0 764 176 0 0 chr9 37215642 37215784 -80646843 - L1M4b LINE L1 -6631 479 338 2240 110 0 10 chr9 37215894 37216193 -80646434 + AluSg SINE Alu 1 296 -14 536 221 33 61 chr9 37216195 37216376 -80646251 - MIR SINE MIR 0 262 87 287 241 58 0 chr9 37216414 37216501 -80646126 - L1ME LINE L1 -342 5779 5688 351 0 0 0 chr9 37216678 37216717 -80645910 + (CA)n Simple_repeat Simple_repeat 1 39 0 286 211 37 46 chr9 37216723 37216832 -80645795 - L1MC4a LINE L1 -1874 5934 5827 268 140 0 0 chr9 37216872 37216922 -80645705 - L1MC4a LINE L1 -1984 5824 5775 3285 142 19 2 chr9 37217571 37218143 -80644484 - L1MB2 LINE L1 -2 6169 5588 459 323 28 23 chr9 37218236 37218423 -80644204 + MIR SINE MIR 3 188 -64 336 336 163 27 chr9 37219224 37219665 -80642962 - L2 LINE L2 -978 2336 1836 1309 201 101 90 chr9 37219671 37220128 -80642499 - MLT1C LTR MaLR 0 467 6 2181 31 0 4 chr9 37220638 37220899 -80641728 - L1PA5 LINE L1 -3 6151 5892 28803 42 1 1 chr9 37220999 37225043 -80637584 - L1PA5 LINE L1 -476 5678 1633 432 162 34 77 chr9 37225113 37225230 -80637397 - L1MB8 LINE L1 -1 6177 6066 3288 167 48 31 chr9 37225323 37226059 -80636568 - L1MB8 LINE L1 -1 6177 5430 2300 63 0 3 chr9 37226128 37226413 -80636214 - AluY SINE Alu -7 304 21 1961 136 3 3 chr9 37226517 37226811 -80635816 + AluSx SINE Alu 1 294 -18 480 259 59 16 chr9 37226812 37227067 -80635560 - L1MC5 LINE L1 -196 7765 7500 880 143 8 0 chr9 37227070 37227203 -80635424 - AluJb SINE Alu -178 134 1 459 251 78 94 chr9 37227242 37227535 -80635092 - L1MC5 LINE L1 -516 7445 7149 1538 148 109 7 chr9 37227535 37227818 -80634809 - AluSx SINE Alu 0 312 1 459 251 78 94 chr9 37227818 37227886 -80634741 - L1MC5 LINE L1 -812 7149 7081 2306 56 0 0 chr9 37227886 37228156 -80634471 + AluY SINE Alu 27 296 -15 459 251 78 94 chr9 37228156 37228295 -80634332 - L1MC5 LINE L1 -880 7081 6952 1267 197 0 0 chr9 37228361 37228569 -80634058 - AluJo SINE Alu -20 292 85 236 279 0 0 chr9 37228576 37228644 -80633983 - L1MC4a LINE L1 -891 6917 6850 311 313 9 26 chr9 37228652 37228767 -80633860 - L1MC4 LINE L1 0 8042 7930 488 287 144 15 chr9 37228899 37229233 -80633394 - L1ME LINE L1 -382 5788 5412 422 209 139 47 chr9 37229249 37229421 -80633206 - L2 LINE L2 0 3313 3126 1847 165 58 9 chr9 37229429 37229775 -80632852 - MLT1A1 LTR MaLR -2 363 1 562 55 102 0 chr9 37230077 37230315 -80632312 + (TA)n Simple_repeat Simple_repeat 1 262 0 486 198 66 25 chr9 37230315 37230436 -80632191 - FLAM_C SINE Alu -7 126 1 1204 133 29 151 chr9 37230450 37230568 -80632059 - L1MC3 LINE L1 0 7785 7654 3019 157 36 79 chr9 37230568 37231288 -80631339 - LTR8 LTR ERV1 0 691 3 1204 133 29 151 chr9 37231288 37231552 -80631075 - L1MC3 LINE L1 -131 7654 7450 787 268 74 9 chr9 37231566 37231891 -80630736 - L1ME LINE L1 -2005 4141 3796 217 284 0 37 chr9 37231898 37231979 -80630648 + (CATATA)n Simple_repeat Simple_repeat 5 82 0 279 257 4 26 chr9 37231979 37232095 -80630532 - L1ME LINE L1 -2369 3777 3659 904 81 0 0 chr9 37232388 37232499 -80630128 + AluSx SINE Alu 1 111 -201 446 194 16 0 chr9 37232506 37232630 -80629997 + (TA)n Simple_repeat Simple_repeat 1 126 0 1322 125 0 0 chr9 37232630 37232822 -80629805 + AluSx SINE Alu 119 310 0 524 277 141 0 chr9 37233059 37233243 -80629384 + L2 LINE L2 2591 2800 -514 366 247 0 0 chr9 37233246 37233319 -80629308 + L2 LINE L2 3241 3313 0 201 322 0 58 chr9 37233340 37233427 -80629200 - MIR SINE MIR -95 113 32 242 378 98 47 chr9 37234515 37234811 -80627816 + L2 LINE L2 2960 3270 -2 189 0 0 0 chr9 37234978 37234999 -80627628 + (TG)n Simple_repeat Simple_repeat 2 22 0 1550 167 0 30 chr9 37235160 37235451 -80627176 + AluJo SINE Alu 29 311 0 703 287 27 31 chr9 37235452 37235713 -80626914 - MIR SINE MIR -1 261 2 513 187 56 173 chr9 37236283 37236692 -80625935 - L1MC4 LINE L1 0 8042 7697 4276 96 14 8 chr9 37236692 37237327 -80625300 - L1MA3 LINE L1 0 6305 5667 513 187 56 173 chr9 37237327 37237403 -80625224 - L1MC4 LINE L1 -345 7697 7614 401 131 37 37 chr9 37237403 37237510 -80625117 + CT-rich Low_complexity Low_complexity 5 111 0 2023 157 3 6 chr9 37237518 37237830 -80624797 - AluSx SINE Alu -1 311 1 21 0 0 0 chr9 37237838 37237859 -80624768 + AT_rich Low_complexity Low_complexity 1 21 0 1917 154 0 7 chr9 37237861 37238153 -80624474 + AluJb SINE Alu 1 290 -22 1739 161 13 7 chr9 37238325 37238623 -80624004 - AluSx SINE Alu -12 300 1 348 253 0 0 chr9 37238624 37238699 -80623928 - L1ME LINE L1 -613 5553 5479 213 213 0 0 chr9 37238701 37238748 -80623879 + CT-rich Low_complexity Low_complexity 2 48 0 450 223 33 33 chr9 37238861 37238982 -80623645 - L2 LINE L2 0 3313 3193 * 886 306 78 45 chr9 37238974 37239526 -80623101 + L2 LINE L2 2218 2787 -527 603 299 113 14 chr9 37240664 37240885 -80621742 - MIR SINE MIR 0 262 20 2180 116 3 0 chr9 37240885 37241179 -80621448 + AluSx SINE Alu 1 295 -17 1193 193 67 0 chr9 37243189 37243412 -80619215 + MER8 DNA MER2_type 1 238 -1 1309 191 76 39 chr9 37243473 37243829 -80618798 + MLT1A2 LTR MaLR 1 369 -5 2442 199 9 11 chr9 37243834 37244376 -80618251 + MLT1A2-int LTR MaLR 1 541 -830 278 244 33 11 chr9 37244429 37244519 -80618108 + MLT1A2-int LTR MaLR 676 767 -968 1896 183 25 8 chr9 37244581 37244979 -80617648 + MLT1A2-int LTR MaLR 1331 1735 0 1476 204 30 28 chr9 37244982 37245344 -80617283 + MLT1A2 LTR MaLR 4 366 -8 695 182 15 23 chr9 37245482 37245614 -80617013 + FLAM_C SINE Alu 1 131 -12 1716 129 82 18 chr9 37245649 37245928 -80616699 - AluSx SINE Alu -13 299 3 382 294 59 13 chr9 37245930 37246083 -80616544 + MIR3 SINE MIR 44 203 -5 882 115 0 23 chr9 37246245 37246375 -80616252 + FLAM_C SINE Alu 1 127 -6 266 54 0 0 chr9 37247277 37247314 -80615313 - L1PA7 LINE L1 -10 6144 6108 2112 104 0 0 chr9 37248164 37248434 -80614193 + AluY SINE Alu 1 270 -41 278 113 0 38 chr9 37248534 37248587 -80614040 - L1MC4 LINE L1 -517 7525 7475 739 247 34 11 chr9 37248591 37248854 -80613773 - L1MC4 LINE L1 -633 7409 7141 2593 232 23 60 chr9 37248916 37249689 -80612938 - MER21B LTR ERV1 -107 756 12 1482 226 31 19 chr9 37249719 37250143 -80612484 - L1MC4 LINE L1 -911 7131 6703 298 259 17 9 chr9 37250230 37250346 -80612281 + (TATATG)n Simple_repeat Simple_repeat 2 118 0 233 227 0 82 chr9 37250590 37250687 -80611940 - L1MC4a LINE L1 -172 7636 7548 * 458 187 22 82 chr9 37250673 37250761 -80611866 - L1M4 LINE L1 -1164 4982 4903 2387 93 0 3 chr9 37250761 37251061 -80611566 + AluSc SINE Alu 1 299 -10 458 187 22 82 chr9 37251061 37251106 -80611521 - L1M4 LINE L1 -1243 4903 4857 369 239 210 21 chr9 37251804 37252150 -80610477 + L1ME4a LINE L1 5613 6053 -68 2440 100 0 0 chr9 37252150 37252460 -80610167 - AluSx SINE Alu -2 310 1 369 239 210 21 chr9 37252460 37252532 -80610095 + L1ME4a LINE L1 6053 6110 -11 826 137 8 8 chr9 37254145 37254276 -80608351 - FLAM_C SINE Alu -2 131 1 197 319 1 62 chr9 37255084 37255166 -80607461 - MIR SINE MIR -133 75 5 2001 136 14 0 chr9 37255506 37255793 -80606834 - AluSq SINE Alu -22 291 1 2015 158 0 7 chr9 37255926 37256229 -80606398 + AluJb SINE Alu 1 301 -11 25 0 0 0 chr9 37256674 37256699 -80605928 + AT_rich Low_complexity Low_complexity 1 25 0 2839 154 28 9 chr9 37258935 37259475 -80603152 - L1MB5 LINE L1 0 6174 5625 638 239 45 57 chr9 37259475 37259722 -80602905 - L1MC4 LINE L1 -2054 5754 5511 2132 69 0 8 chr9 37260910 37261171 -80601456 + AluSc SINE Alu 39 297 -12 950 147 38 0 chr9 37261171 37261328 -80601299 + AluSg/x SINE Alu 134 296 -16 254 295 42 84 chr9 37261346 37261512 -80601115 - L2 LINE L2 -92 3180 3022 876 184 30 0 chr9 37261516 37261684 -80600943 - L1MC1 LINE L1 -185 6148 5976 316 342 83 50 chr9 37261684 37261981 -80600646 - L2 LINE L2 -250 3022 2712 251 232 10 50 chr9 37262105 37262204 -80600423 - L1ME3A LINE L1 -114 6056 5962 215 31 31 0 chr9 37262317 37262349 -80600278 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 2079 101 0 14 chr9 37262355 37262631 -80599996 - AluSx SINE Alu -37 275 4 463 221 4 111 chr9 37262634 37262869 -80599758 - L1MC5 LINE L1 -435 7526 7317 319 254 37 37 chr9 37262879 37263013 -80599614 - L1ME3A LINE L1 -319 5802 5669 268 323 30 0 chr9 37263232 37263331 -80599296 - L1ME3A LINE L1 -2166 5642 5541 672 258 159 30 chr9 37263433 37263766 -80598861 - L2 LINE L2 -5 3308 2933 426 224 48 55 chr9 37263767 37263877 -80598750 + L1ME3A LINE L1 5995 6105 -65 2194 116 0 19 chr9 37263877 37264187 -80598440 + AluSx SINE Alu 1 304 -8 426 224 48 55 chr9 37264187 37264241 -80598386 + L1ME3A LINE L1 6105 6158 -12 358 333 15 0 chr9 37264319 37264517 -80598110 - L1ME3A LINE L1 -2262 3884 3684 21 0 0 0 chr9 37265616 37265637 -80596990 + AT_rich Low_complexity Low_complexity 1 21 0 2162 142 3 0 chr9 37266054 37266357 -80596270 + AluSx SINE Alu 1 304 -8 25 51 0 0 chr9 37266740 37266779 -80595848 + AT_rich Low_complexity Low_complexity 1 39 0 2205 116 3 0 chr9 37269486 37269780 -80592847 - AluSx SINE Alu -17 295 1 26 30 0 0 chr9 37271551 37271584 -80591043 + AT_rich Low_complexity Low_complexity 1 33 0 2355 216 40 53 chr9 37271783 37272265 -80590362 - L1MC4 LINE L1 -11 8031 7544 2111 116 14 0 chr9 37272265 37272559 -80590068 - AluSx SINE Alu -14 298 1 2355 216 40 53 chr9 37272559 37272716 -80589911 - L1MC4 LINE L1 -498 7544 7386 2574 49 0 0 chr9 37272716 37273023 -80589604 - AluY SINE Alu -4 307 1 2355 216 40 53 chr9 37273023 37273235 -80589392 - L1MC4 LINE L1 -656 7386 7190 1839 172 0 7 chr9 37273311 37273596 -80589031 + AluJb SINE Alu 1 283 -29 753 167 0 0 chr9 37273674 37273794 -80588833 - FLAM_C SINE Alu -13 120 1 2196 109 0 3 chr9 37274123 37274416 -80588211 + AluSq SINE Alu 1 292 -21 378 0 0 0 chr9 37284397 37284439 -80578188 + (TG)n Simple_repeat Simple_repeat 2 43 0 183 269 118 65 chr9 37284913 37285006 -80577621 + L2 LINE L2 3028 3125 -147 197 154 103 0 chr9 37285069 37285108 -80577519 - MIR SINE MIR -101 161 119 197 250 62 0 chr9 37285082 37285130 -80577497 - MIR SINE MIR -63 145 95 1716 156 49 3 chr9 37286158 37286446 -80576181 - AluJb SINE Alu -11 301 1 848 157 108 16 chr9 37287121 37287306 -80575321 - MER20 DNA MER1_type 0 219 18 1945 144 0 0 chr9 37288522 37288800 -80573827 + AluJb SINE Alu 6 334 0 460 0 0 0 chr9 37288800 37288851 -80573776 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 1548 152 37 0 chr9 37289722 37289965 -80572662 - L1PB4 LINE L1 -1 6155 5904 809 119 0 70 chr9 37289984 37290049 -80572578 - L1PB4 LINE L1 -365 5791 5740 1639 164 25 47 chr9 37290049 37290366 -80572261 - AluJo SINE Alu -2 310 1 809 119 0 70 chr9 37290366 37290443 -80572184 - L1PB4 LINE L1 -416 5740 5659 286 139 0 0 chr9 37290456 37290499 -80572128 + Charlie7 DNA MER1_type 1666 1708 -904 3247 247 74 18 chr9 37290535 37291554 -80571073 - L1MC3 LINE L1 -2 8040 6977 1082 232 128 36 chr9 37291557 37292319 -80570308 + Charlie7 DNA MER1_type 1718 2584 -28 1871 158 0 32 chr9 37292375 37292685 -80569942 - AluJo SINE Alu -12 300 1 2170 116 0 44 chr9 37292693 37293011 -80569616 - AluSx SINE Alu -8 304 1 194 239 56 42 chr9 37293491 37293562 -80569065 - L2 LINE L2 -802 2512 2441 1068 219 176 28 chr9 37293611 37294003 -80568624 - L1MC3 LINE L1 -1793 6015 5566 844 271 47 94 chr9 37294011 37294288 -80568339 - MLT1I LTR MaLR -58 351 88 231 176 0 0 chr9 37294331 37294365 -80568262 + Alu SINE Alu 1 34 -266 1774 116 0 4 chr9 37294365 37294607 -80568020 + AluSg/x SINE Alu 72 312 0 1164 144 62 0 chr9 37294611 37294819 -80567808 - L1PA16 LINE L1 -23 6143 5923 2665 108 27 87 chr9 37294922 37295045 -80567582 - L1PA16 LINE L1 -121 6045 5916 1718 159 7 14 chr9 37295045 37295335 -80567292 - AluJo SINE Alu -8 304 17 2665 108 27 87 chr9 37295335 37295363 -80567264 - L1PA16 LINE L1 -250 5916 5605 612 231 42 145 chr9 37295363 37295888 -80566739 - L1MC4a LINE L1 -1886 5922 5452 291 308 29 29 chr9 37295954 37296058 -80566569 + L2 LINE L2 2927 3030 -283 445 258 181 40 chr9 37296409 37296609 -80566018 - L1ME4a LINE L1 -151 5970 5800 1831 161 40 0 chr9 37296609 37296907 -80565720 - AluJo SINE Alu -2 310 1 445 258 181 40 chr9 37296907 37297032 -80565595 - L1ME4a LINE L1 -321 5800 5599 669 218 0 41 chr9 37297044 37297191 -80565436 - FLAM_C SINE Alu -2 141 1 436 268 145 25 chr9 37297193 37297428 -80565199 - L1ME4a LINE L1 -503 5618 5356 31 76 0 0 chr9 37298356 37298422 -80564205 + AT_rich Low_complexity Low_complexity 1 66 0 289 213 4 209 chr9 37298558 37298788 -80563839 - L1MC/D LINE L1 -307 5814 5727 369 315 203 20 chr9 37299044 37299339 -80563288 + L2 LINE L2 328 676 -2638 724 274 54 17 chr9 37299351 37299592 -80563035 - MIR SINE MIR -1 261 12 516 225 17 69 chr9 37299672 37299845 -80562782 + MER103 DNA DNA 2 165 -1 658 327 153 8 chr9 37299925 37300396 -80562231 + L2 LINE L2 1866 2404 -910 185 174 0 87 chr9 37300546 37300592 -80562035 + L2 LINE L2 3271 3312 -1 1756 144 27 20 chr9 37300970 37301669 -80560958 - L1MB7 LINE L1 -19 6165 5341 1583 131 141 58 chr9 37301669 37301801 -80560826 - MER44D DNA MER2_type -1883 608 488 1502 173 58 25 chr9 37301801 37302079 -80560548 - AluJo SINE Alu -25 287 1 1583 131 141 58 chr9 37302079 37302258 -80560369 - MER44D DNA MER2_type -2003 488 1 1756 144 27 20 chr9 37302258 37302430 -80560197 - L1MB7 LINE L1 -843 5341 5172 2180 198 52 68 chr9 37302587 37303149 -80559478 - MLT2B3 LTR ERVL 0 554 2 2282 104 0 16 chr9 37303397 37303714 -80558913 - AluSx SINE Alu 0 312 1 927 65 24 36 chr9 37303989 37304157 -80558470 + (TTCC)n Simple_repeat Simple_repeat 1 166 0 2302 74 7 14 chr9 37304164 37304461 -80558166 - AluY SINE Alu -16 295 1 1898 149 16 117 chr9 37304539 37304882 -80557745 + MLT1B LTR MaLR 5 298 -92 1861 142 0 4 chr9 37304882 37305156 -80557471 - AluJo SINE Alu -16 296 24 1898 149 16 117 chr9 37305156 37305241 -80557386 + MLT1B LTR MaLR 298 390 0 1893 142 7 0 chr9 37306618 37306936 -80555691 - AluSx SINE Alu 0 321 2 1544 120 139 15 chr9 37307381 37307640 -80554987 - AluSg1 SINE Alu -18 291 1 278 243 27 27 chr9 37308112 37308186 -80554441 + L2 LINE L2 3010 3083 -189 825 200 104 42 chr9 37308281 37308541 -80554086 + L1ME3A LINE L1 5894 6169 -1 204 200 0 0 chr9 37308802 37308837 -80553790 + (TGAG)n Simple_repeat Simple_repeat 1 35 0 366 287 181 32 chr9 37308896 37309084 -80553543 + MIR SINE MIR 40 255 -7 199 376 13 13 chr9 37309099 37309248 -80553379 + L2 LINE L2 2907 3055 -217 2355 112 0 0 chr9 37309510 37309823 -80552804 - AluSq SINE Alu 0 313 1 189 278 14 56 chr9 37310222 37310294 -80552333 + L2 LINE L2 3199 3267 -5 2379 72 3 10 chr9 37310312 37310619 -80552008 + AluSq SINE Alu 1 305 -8 279 320 130 28 chr9 37311236 37311252 -80551375 + L2 LINE L2 2049 2062 -1252 1578 159 23 55 chr9 37311252 37311560 -80551067 - AluJo SINE Alu -14 298 1 279 320 130 28 chr9 37311560 37311865 -80550762 + L2 LINE L2 2062 2403 -911 226 326 0 0 chr9 37311946 37311992 -80550635 + L2 LINE L2 3141 3186 -86 814 172 0 64 chr9 37312042 37312199 -80550428 - AluJb SINE Alu 0 312 166 1053 131 4 72 chr9 37312200 37312387 -80550240 - MLT1A1 LTR MaLR -188 177 1 246 317 34 91 chr9 37312665 37312873 -80549754 - L2 LINE L2 -562 2752 2557 271 186 51 0 chr9 37316296 37316355 -80546272 + MER117 DNA MER1_type 44 105 -92 206 338 13 0 chr9 37317165 37317242 -80545385 + GA-rich Low_complexity Low_complexity 4 81 0 22 0 0 0 chr9 37317849 37317871 -80544756 + AT_rich Low_complexity Low_complexity 1 22 0 285 75 0 0 chr9 37318452 37318492 -80544135 + (GA)n Simple_repeat Simple_repeat 1 40 0 561 187 91 91 chr9 37318642 37318829 -80543798 + MIR SINE MIR 20 206 -56 1558 169 63 3 chr9 37319314 37319616 -80543011 + MER33 DNA MER1_type 5 324 0 242 292 21 0 chr9 37319988 37320036 -80542591 + MIR SINE MIR 35 83 -125 255 276 41 102 chr9 37320053 37320151 -80542476 - L2 LINE L2 -25 3288 3197 207 0 0 0 chr9 37320451 37320474 -80542153 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 381 239 43 33 chr9 37320480 37320572 -80542055 - L2 LINE L2 -43 3229 3137 1805 175 67 94 chr9 37320745 37321224 -80541403 - MER31B LTR ERV1 0 466 1 1602 152 93 0 chr9 37322474 37322744 -80539883 - AluJo SINE Alu -4 308 14 988 67 8 0 chr9 37323513 37323632 -80538995 + AluSp SINE Alu 1 120 -193 226 0 0 56 chr9 37323632 37323668 -80538959 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 397 231 141 16 chr9 37324299 37324420 -80538207 - MIR3 SINE MIR -59 149 14 2281 93 7 0 chr9 37324484 37324773 -80537854 - AluSg SINE Alu -19 291 1 1585 238 92 43 chr9 37330277 37330932 -80531695 + L1MC4a LINE L1 5463 6149 -1659 184 349 86 33 chr9 37331131 37331283 -80531344 + L2 LINE L2 2889 3048 -224 207 179 26 0 chr9 37331943 37331982 -80530645 - MIR SINE MIR -25 237 198 478 273 77 7 chr9 37331995 37332138 -80530489 + L2 LINE L2 1843 1995 -1319 5021 140 48 14 chr9 37332138 37333130 -80529497 - L1MB7 LINE L1 0 6184 5158 22 0 0 0 chr9 37333136 37333158 -80529469 + AT_rich Low_complexity Low_complexity 1 22 0 897 152 8 0 chr9 37333163 37333295 -80529332 + FLAM_C SINE Alu 1 133 -10 3732 139 31 85 chr9 37333299 37334077 -80528550 - L1MB3 LINE L1 -3 6180 5445 1757 204 20 10 chr9 37334075 37334248 -80528379 - L1MB7 LINE L1 -974 5172 5002 * 2215 100 3 19 chr9 37334248 37334557 -80528070 - AluSq SINE Alu -9 304 1 1757 204 20 10 chr9 37334557 37334780 -80527847 - L1MB7 LINE L1 -1144 5002 4772 2570 258 85 34 chr9 37334780 37335845 -80526782 + L2 LINE L2 1990 3168 -145 525 300 152 5 chr9 37335849 37336059 -80526568 + MIR SINE MIR 21 261 -1 344 198 58 107 chr9 37336073 37336194 -80526433 + L2 LINE L2 3172 3286 -27 1501 147 6 97 chr9 37336217 37336536 -80526091 - AluJo SINE Alu -22 290 1 382 264 264 7 chr9 37337635 37337945 -80524682 - L2 LINE L2 -635 2679 2290 2432 62 31 0 chr9 37338085 37338377 -80524250 + AluY SINE Alu 1 301 -10 252 291 103 17 chr9 37341419 37341536 -80521091 + L2 LINE L2 3107 3233 -39 276 250 194 65 chr9 37342446 37342629 -80519998 + MIR SINE MIR 16 216 -46 392 214 22 11 chr9 37342729 37342818 -80519809 - L2 LINE L2 -8 3305 3216 480 312 64 6 chr9 37342881 37343038 -80519589 + MIR3 SINE MIR 23 188 -20 849 223 19 15 chr9 37343178 37343443 -80519184 - LTR37B LTR ERV1 -4 464 199 288 0 0 0 chr9 37343979 37344011 -80518616 + (TG)n Simple_repeat Simple_repeat 2 33 0 1698 166 24 0 chr9 37344408 37344534 -80518093 + AluSx SINE Alu 1 122 -190 396 0 0 0 chr9 37344534 37344578 -80518049 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 1698 166 24 0 chr9 37344578 37344740 -80517887 + AluSx SINE Alu 122 296 -16 1994 90 10 14 chr9 37344932 37345221 -80517406 - AluY SINE Alu -4 307 20 464 292 15 15 chr9 37345517 37345647 -80516980 - L2 LINE L2 -4 3268 3139 1172 214 38 13 chr9 37345726 37345964 -80516663 + MIR SINE MIR 8 251 -11 2140 117 10 0 chr9 37346378 37346687 -80515940 - AluSx SINE Alu 0 312 1 1618 125 0 104 chr9 37347225 37347552 -80515075 - AluJb SINE Alu -19 293 1 2494 167 87 10 chr9 37347556 37348060 -80514567 - L1MB7 LINE L1 0 6184 5642 520 266 39 110 chr9 37348329 37348664 -80513963 + L1ME4a LINE L1 5798 6108 -13 531 167 10 0 chr9 37348895 37348997 -80513630 + L1MB8 LINE L1 6076 6178 0 1906 93 0 0 chr9 37349019 37349267 -80513360 + AluSx SINE Alu 1 248 -64 316 98 478 0 chr9 37349269 37349361 -80513266 - MER53 DNA DNA -53 136 1 185 280 80 60 chr9 37350221 37350321 -80512306 - L2 LINE L2 0 3313 3212 598 114 24 41 chr9 37350321 37350444 -80512183 - L1MA8 LINE L1 -2 6289 6169 985 261 63 44 chr9 37350447 37350857 -80511770 + L1PBa LINE L1 -15 402 -5802 6289 173 32 24 chr9 37350960 37352611 -80510016 + L1PBa LINE L1 4 1110 -5094 2149 95 0 20 chr9 37352611 37352915 -80509712 - AluSx SINE Alu -14 298 1 6289 173 32 24 chr9 37352915 37353471 -80509156 + L1PBa LINE L1 1110 1660 -4544 255 61 0 0 chr9 37353674 37353707 -80508920 + (TG)n Simple_repeat Simple_repeat 2 34 0 1704 89 20 0 chr9 37356404 37356652 -80505975 - L1MA3 LINE L1 0 6305 6053 4566 114 19 0 chr9 37357106 37357781 -80504846 - L1PA14 LINE L1 -1 6160 5473 240 307 50 30 chr9 37358405 37358506 -80504121 - MIR SINE MIR -59 149 47 945 102 31 0 chr9 37360312 37360521 -80502106 - FLAM_C SINE Alu 0 214 2 204 336 8 16 chr9 37360521 37360564 -80502063 + CT-rich Low_complexity Low_complexity 3 180 0 216 271 0 0 chr9 37360635 37360683 -80501944 + CT-rich Low_complexity Low_complexity 3 50 0 2066 99 0 7 chr9 37361032 37361338 -80501289 + AluSg SINE Alu 1 304 0 1780 153 13 0 chr9 37364741 37365042 -80497585 + AluSq SINE Alu 1 305 -8 1243 126 16 0 chr9 37365182 37365373 -80497254 + AluSg/x SINE Alu 110 303 -9 210 227 0 0 chr9 37367337 37367381 -80495246 + G-rich Low_complexity Low_complexity 1 44 0 1963 124 3 3 chr9 37368544 37368842 -80493785 + AluSx SINE Alu 7 304 -8 216 343 61 10 chr9 37368994 37369093 -80493534 - L2 LINE L2 -9 3304 3201 2212 93 0 3 chr9 37371935 37372236 -80490391 - AluSx SINE Alu -12 300 1 222 172 35 17 chr9 37377216 37377274 -80485353 + (TTG)n Simple_repeat Simple_repeat 2 60 0 304 377 24 18 chr9 37377323 37377490 -80485137 - L2 LINE L2 -208 3064 2897 2162 122 0 0 chr9 37377499 37377803 -80484824 + AluSx SINE Alu 1 304 -8 913 285 12 23 chr9 37377814 37378070 -80484557 + MIR SINE MIR 3 255 -7 255 335 226 14 chr9 37378000 37378358 -80484269 - L2 LINE L2 -357 2957 2524 * 530 310 85 10 chr9 37381391 37381591 -80481036 + MIR SINE MIR 46 260 -2 383 342 77 26 chr9 37381568 37381878 -80480749 - L2 LINE L2 -522 2792 2467 * 2219 23 0 4 chr9 37381920 37382177 -80480450 + L1PA3 LINE L1 5897 6152 -3 186 43 0 0 chr9 37382203 37382226 -80480401 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 469 248 107 7 chr9 37382260 37382409 -80480218 - L1ME1 LINE L1 -6 6160 5997 971 279 48 85 chr9 37382411 37382948 -80479679 - L2 LINE L2 -5 3267 2778 2053 105 24 0 chr9 37382948 37383244 -80479383 - AluSx SINE Alu -9 303 1 971 279 48 85 chr9 37383244 37383554 -80479073 - L2 LINE L2 -494 2778 2458 2029 122 0 0 chr9 37383687 37383983 -80478644 + AluSx SINE Alu 1 296 -16 200 206 0 0 chr9 37386972 37387006 -80475621 + polypyrimidine Low_complexity Low_complexity 2 35 0 321 200 40 60 chr9 37387304 37387404 -80475223 - L1MC5 LINE L1 -26 7935 7838 2417 80 0 3 chr9 37391643 37391955 -80470672 - AluY SINE Alu 0 311 1 10933 180 17 17 chr9 37394684 37395826 -80466801 + L1PB3 LINE L1 2753 3893 -2261 2265 102 7 0 chr9 37395826 37396121 -80466506 + AluSg SINE Alu 1 297 -13 10933 180 17 17 chr9 37396121 37398374 -80464253 + L1PB3 LINE L1 3893 6148 -6 1553 129 33 60 chr9 37398383 37398716 -80463911 - L1MA8 LINE L1 -3 6288 5965 879 101 14 14 chr9 37398718 37398866 -80463761 + L1MA8 LINE L1 5807 5954 -346 825 151 8 0 chr9 37399103 37399229 -80463398 - FLAM_C SINE Alu -6 127 1 1945 118 64 22 chr9 37399465 37399822 -80462805 - THE1C LTR MaLR 0 375 4 1669 162 20 26 chr9 37400700 37401002 -80461625 - AluJo SINE Alu -12 300 1 514 266 56 0 chr9 37401098 37401241 -80461386 - MIR SINE MIR -49 213 63 549 273 42 6 chr9 37401249 37401414 -80461213 - MIR SINE MIR -3 259 89 345 215 15 0 chr9 37401588 37401653 -80460974 - MIR SINE MIR -187 75 10 24 67 0 0 chr9 37402708 37402753 -80459874 + AT_rich Low_complexity Low_complexity 1 45 0 4905 186 90 85 chr9 37403568 37405104 -80457523 + L1MB7 LINE L1 2184 3752 -2630 2075 118 24 0 chr9 37405104 37405400 -80457227 + AluSx SINE Alu 1 303 -9 4905 186 90 85 chr9 37405400 37405813 -80456814 + L1MB7 LINE L1 3752 4161 -2221 1866 171 33 37 chr9 37405808 37406007 -80456620 + L1MB7 LINE L1 5078 5276 -1114 * 1768 159 33 13 chr9 37406007 37406309 -80456318 - AluJo SINE Alu -2 310 3 1866 171 33 37 chr9 37406309 37406614 -80456013 + L1MB7 LINE L1 5276 5575 -815 255 140 0 0 chr9 37406603 37406653 -80455974 + L1PA16 LINE L1 5954 6003 -163 * 274 167 17 0 chr9 37406661 37406721 -80455906 + L1PA16 LINE L1 6097 6157 -9 3980 192 26 7 chr9 37406728 37407562 -80455065 + L1MB7 LINE L1 5555 6404 -16 437 318 63 42 chr9 37407988 37408227 -80454400 + L2 LINE L2 3028 3271 -1 252 348 70 35 chr9 37408396 37408511 -80454116 + L2 LINE L2 3144 3262 -10 21 0 0 0 chr9 37408754 37408775 -80453852 + AT_rich Low_complexity Low_complexity 1 21 0 710 275 62 27 chr9 37409268 37409686 -80452941 - L1MC4a LINE L1 -304 5817 5439 277 294 10 0 chr9 37409688 37409790 -80452837 - L1P LINE L1 -784 5382 5280 438 214 171 60 chr9 37409911 37410163 -80452464 - L1MC4a LINE L1 -1823 5985 5706 21 0 0 0 chr9 37410244 37410265 -80452362 + AT_rich Low_complexity Low_complexity 1 21 0 1634 160 173 14 chr9 37410314 37410683 -80451944 - MSTA LTR MaLR 0 428 1 502 285 33 7 chr9 37410794 37410945 -80451682 + MIR SINE MIR 35 189 -73 237 359 7 69 chr9 37410965 37411110 -80451517 + L2 LINE L2 3137 3272 0 208 331 38 60 chr9 37411716 37411849 -80450778 - L3 LINE CR1 -2 1575 1446 1023 52 7 0 chr9 37412048 37412183 -80450444 - L1PA12 LINE L1 -7 6161 6026 658 181 113 0 chr9 37412636 37412769 -80449858 + MIR SINE MIR 115 262 0 282 309 7 43 chr9 37464340 37464517 -80398110 + CT-rich Low_complexity Low_complexity 6 293 0 237 286 38 19 chr9 37465824 37465929 -80396698 + MIR SINE MIR 107 213 -49 204 369 65 36 chr9 37466248 37466416 -80396211 - L2 LINE L2 -202 3070 2898 377 270 9 0 chr9 37466463 37466574 -80396053 - L1MEd LINE L1 -5301 818 707 2783 26 0 0 chr9 37466638 37466949 -80395678 + AluYa5 SINE Alu 1 311 0 352 301 49 0 chr9 37467309 37467432 -80395195 - L1MEd LINE L1 -5413 706 578 756 266 89 59 chr9 37467454 37467792 -80394835 - L1MEd LINE L1 -5599 520 173 2318 102 0 0 chr9 37468589 37468882 -80393745 + AluSg SINE Alu 1 293 -17 406 198 104 28 chr9 37468927 37469033 -80393594 + L1MC4a LINE L1 5806 5919 -1889 806 157 8 30 chr9 37469213 37469347 -80393280 - FLAM_C SINE Alu -1 132 2 234 0 0 0 chr9 37469349 37469375 -80393252 + (A)n Simple_repeat Simple_repeat 1 26 0 33 0 0 0 chr9 37470813 37470846 -80391781 + AT_rich Low_complexity Low_complexity 1 33 0 861 144 0 0 chr9 37470846 37470964 -80391663 - FLAM_C SINE Alu -15 118 1 2490 61 0 0 chr9 37470977 37471270 -80391357 - AluY SINE Alu 0 311 19 468 282 87 25 chr9 37471735 37472093 -80390534 + L1ME4a LINE L1 5739 6118 -3 198 0 0 0 chr9 37472750 37472772 -80389855 + (TGGA)n Simple_repeat Simple_repeat 2 23 0 745 176 17 0 chr9 37477417 37477536 -80385091 + FLAM_C SINE Alu 5 125 -18 17490 136 31 20 chr9 37477558 37480019 -80382608 + L1 LINE L1 18 2513 -5052 2488 84 0 0 chr9 37480019 37480327 -80382300 + AluY SINE Alu 1 308 -3 17490 136 31 20 chr9 37480327 37480640 -80381987 + L1 LINE L1 2513 2821 -4744 1675 157 187 49 chr9 37480653 37481124 -80381503 - LTR10A LTR ERV1 -61 548 13 12008 111 29 71 chr9 37481134 37484147 -80378480 - Harlequin LTR ERV1 -2 6647 2066 2665 46 0 0 chr9 37484147 37484454 -80378173 - AluY SINE Alu -4 307 1 12008 111 29 71 chr9 37484454 37485763 -80376864 - Harlequin LTR ERV1 -4583 2066 704 488 178 19 6 chr9 37485766 37485923 -80376704 + CT-rich Low_complexity Low_complexity 2 160 0 996 204 79 138 chr9 37486213 37486835 -80375792 - Harlequin LTR ERV1 -6064 585 1 1785 177 207 36 chr9 37486844 37487312 -80375315 - LTR10A LTR ERV1 -61 548 1 1344 136 18 5 chr9 37487312 37487532 -80375095 + L1 LINE L1 2818 3040 -4525 1243 87 0 0 chr9 37487548 37487720 -80374907 - L1M1 LINE L1 -865 5440 5269 902 168 6 6 chr9 37487716 37487883 -80374744 + L1M1 LINE L1 6516 6682 -883 * 816 180 14 0 chr9 37488280 37488419 -80374208 + FAM SINE Alu 28 168 -17 258 246 77 93 chr9 37488456 37488704 -80373923 + HAL1 LINE L1 941 1184 -1323 564 251 30 25 chr9 37488753 37488952 -80373675 + HAL1 LINE L1 1428 1627 -880 587 273 257 6 chr9 37488955 37489270 -80373357 + L2 LINE L2 2919 3312 -1 216 220 20 0 chr9 37489351 37489401 -80373226 + L2 LINE L2 3222 3272 0 567 239 87 48 chr9 37490620 37490909 -80371718 + L1MC5 LINE L1 7629 7928 -33 2402 187 36 49 chr9 37491166 37491730 -80370897 + L1ME1 LINE L1 5526 6257 -77 180 111 0 0 chr9 37491730 37491757 -80370870 + (TG)n Simple_repeat Simple_repeat 2 28 0 2402 187 36 49 chr9 37491757 37491795 -80370832 + L1ME1 LINE L1 6257 6294 -40 486 258 28 28 chr9 37491798 37491976 -80370651 + L1ME3A LINE L1 5993 6170 0 1354 245 35 43 chr9 37492064 37492252 -80370375 - MLT1J2 LTR MaLR -78 372 187 2323 92 0 19 chr9 37492252 37492566 -80370061 - AluSc SINE Alu -1 308 1 1354 245 35 43 chr9 37492566 37492752 -80369875 - MLT1J2 LTR MaLR -263 187 1 712 214 0 8 chr9 37493567 37493693 -80368934 - FLAM_C SINE Alu -17 126 2 372 297 230 0 chr9 37493931 37494140 -80368487 + MIR SINE MIR 6 262 0 192 253 77 66 chr9 37494719 37494810 -80367817 - L2 LINE L2 -25 3247 3156 180 225 25 0 chr9 37495298 37495338 -80367289 - L2 LINE L2 -6 3307 3267 320 346 39 0 chr9 37496623 37496727 -80365900 - L2 LINE L2 -11 3261 3154 1904 98 29 0 chr9 37496765 37497040 -80365587 + L1MA7 LINE L1 6009 6291 0 678 157 22 30 chr9 37497316 37497450 -80365177 + L1MB5 LINE L1 6034 6166 -8 2155 119 0 10 chr9 37497483 37497786 -80364841 + AluSq SINE Alu 1 300 -13 2942 150 50 29 chr9 37498331 37498885 -80363742 + L1MB4 LINE L1 5609 6174 -6 1379 253 73 62 chr9 37499207 37500023 -80362604 - L1ME4a LINE L1 -3 6118 5294 407 316 106 5 chr9 37500043 37500261 -80362366 - L1ME4a LINE L1 -893 5253 5014 867 178 6 0 chr9 37501918 37502075 -80360552 - AluSg/x SINE Alu -17 293 136 2285 116 0 0 chr9 37502807 37503109 -80359518 + AluSx SINE Alu 1 302 -10 223 253 32 11 chr9 37503836 37503931 -80358696 + A-rich Low_complexity Low_complexity 5 101 0 2165 127 0 0 chr9 37504602 37504886 -80357741 + AluSx SINE Alu 1 284 -28 272 294 193 0 chr9 37505864 37505973 -80356654 - L2 LINE L2 -4 3268 3139 1743 150 0 26 chr9 37506261 37506574 -80356053 - AluSx SINE Alu -7 305 1 288 148 0 0 chr9 37506622 37506683 -80355944 + (T)n Simple_repeat Simple_repeat 1 61 0 218 135 54 0 chr9 37506751 37506788 -80355839 + (CCCTG)n Simple_repeat Simple_repeat 2 40 0 228 196 0 0 chr9 37507878 37507929 -80354698 - L1MB5 LINE L1 -21 6153 6103 600 202 17 17 chr9 37508106 37508249 -80354378 + L1ME2 LINE L1 6030 6181 -3 2295 104 10 0 chr9 37508419 37508718 -80353909 - AluSx SINE Alu -5 307 6 4295 109 43 0 chr9 37509049 37509680 -80352947 - Tigger1 DNA MER2_type -1514 904 247 310 322 81 56 chr9 37509797 37510120 -80352507 + L2 LINE L2 2450 2780 -534 1566 120 132 8 chr9 37510123 37510389 -80352238 + AluSg SINE Alu 1 299 -11 248 160 20 0 chr9 37510389 37510439 -80352188 + LTR37A LTR ERV1 376 426 0 2337 77 21 0 chr9 37511293 37511580 -80351047 - AluSx SINE Alu -19 293 1 1175 175 86 77 chr9 37511610 37511948 -80350679 - MER50 LTR ERV1 0 734 394 3475 133 82 38 chr9 37512160 37512767 -80349860 - MER51A LTR ERV1 0 634 1 284 182 61 30 chr9 37512773 37512839 -80349788 - MER50 LTR ERV1 -657 77 10 1674 147 84 23 chr9 37512845 37513192 -80349435 + THE1C LTR MaLR 8 375 0 237 65 0 0 chr9 37513369 37513400 -80349227 + (CACCC)n Simple_repeat Simple_repeat 2 32 0 25 0 0 0 chr9 37513597 37513622 -80349005 + GC_rich Low_complexity Low_complexity 1 25 0 210 37 0 0 chr9 37513893 37513920 -80348707 + (CCG)n Simple_repeat Simple_repeat 3 29 0 258 298 48 12 chr9 37514637 37514721 -80347906 + L2 LINE L2 3154 3240 -32 299 161 259 0 chr9 37514731 37514812 -80347815 - MER51C LTR ERV1 -11 629 528 1899 106 6 77 chr9 37515445 37515757 -80346870 + AluSx SINE Alu 1 290 -22 401 115 0 26 chr9 37515944 37516034 -80346593 - MER53 DNA DNA -2 187 4 1713 152 55 7 chr9 37516458 37516748 -80345879 - L1MB3 LINE L1 -19 6164 5861 3456 89 20 0 chr9 37516763 37517213 -80345414 - L1PA14 LINE L1 0 6161 5703 2982 154 54 65 chr9 37517218 37517273 -80345354 - L1MB3 LINE L1 -308 5875 5821 2183 128 3 0 chr9 37517273 37517579 -80345048 - AluSx SINE Alu -5 307 1 2982 154 54 65 chr9 37517579 37517807 -80344820 - L1MB3 LINE L1 -362 5821 5592 207 0 0 0 chr9 37517807 37517830 -80344797 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2982 154 54 65 chr9 37517830 37517960 -80344667 - L1MB3 LINE L1 -591 5592 5462 2096 113 7 0 chr9 37517960 37518244 -80344383 + AluSx SINE Alu 1 286 -26 2982 154 54 65 chr9 37518244 37518669 -80343958 - L1MB3 LINE L1 -721 5462 5042 34 24 0 0 chr9 37518670 37518711 -80343916 + AT_rich Low_complexity Low_complexity 1 41 0 471 35 69 52 chr9 37518711 37518885 -80343742 + (TA)n Simple_repeat Simple_repeat 1 177 0 250 198 62 0 chr9 37518887 37518983 -80343644 + (CTATA)n Simple_repeat Simple_repeat 2 103 0 470 11 65 69 chr9 37519102 37519383 -80343244 + (TA)n Simple_repeat Simple_repeat 1 279 0 353 47 128 0 chr9 37519400 37519548 -80343079 + (TA)n Simple_repeat Simple_repeat 2 168 0 * 471 153 23 17 chr9 37519531 37519707 -80342920 + (TATAA)n Simple_repeat Simple_repeat 1 177 0 537 119 36 28 chr9 37519734 37520269 -80342358 + (TTATA)n Simple_repeat Simple_repeat 1 539 0 3519 188 14 4 chr9 37520271 37520977 -80341650 - L1MB3 LINE L1 -1115 5031 4319 824 163 33 141 chr9 37522965 37523235 -80339392 - L1MB3 LINE L1 -1810 4336 4096 2018 120 0 60 chr9 37523238 37523555 -80339072 + AluSx SINE Alu 2 299 -13 2115 88 54 14 chr9 37523557 37523852 -80338775 + AluSc SINE Alu 1 307 -2 2054 143 13 0 chr9 37523985 37524286 -80338341 + AluSx SINE Alu 1 305 -7 1933 104 184 32 chr9 37525128 37525444 -80337183 - THE1B LTR MaLR 0 364 1 488 165 35 0 chr9 37525449 37525534 -80337093 - MLT1H LTR MaLR -8 541 454 248 306 69 0 chr9 37525555 37525627 -80337000 - MARNA DNA Mariner -417 169 93 1833 166 0 0 chr9 37526275 37526565 -80336062 + AluSx SINE Alu 1 290 -22 227 280 61 38 chr9 37527052 37527184 -80335443 + MER5A DNA MER1_type 53 187 -2 * 513 214 7 14 chr9 37527081 37527197 -80335430 - MER5A DNA MER1_type -71 118 4 730 276 103 15 chr9 37527579 37527775 -80334852 - L1ME4a LINE L1 0 6121 5944 4810 78 12 35 chr9 37527775 37527828 -80334799 - L1PB2 LINE L1 -8 6143 6090 2201 127 0 3 chr9 37527828 37528142 -80334485 - AluSq SINE Alu 0 313 1 4810 78 12 35 chr9 37528142 37528756 -80333871 - L1PB2 LINE L1 -61 6090 5490 2151 134 0 0 chr9 37528756 37529055 -80333572 - AluSx SINE Alu -13 299 1 4810 78 12 35 chr9 37529055 37529076 -80333551 - L1PB2 LINE L1 -661 5490 5470 730 276 103 15 chr9 37529076 37529334 -80333293 - L1ME4a LINE L1 -177 5944 5430 2272 118 3 10 chr9 37529432 37529745 -80332882 - AluSq SINE Alu -2 311 1 1537 132 34 48 chr9 37529758 37530053 -80332574 + L1MB1 LINE L1 5873 6163 -5 281 350 101 46 chr9 37530317 37530554 -80332073 + L2 LINE L2 2937 3186 -86 26 30 0 0 chr9 37530653 37530686 -80331941 + AT_rich Low_complexity Low_complexity 1 33 0 1947 201 59 0 chr9 37530726 37531133 -80331494 + L1M4 LINE L1 3878 4308 -1838 938 164 12 0 chr9 37531133 37531298 -80331329 + L1MB7 LINE L1 6018 6184 0 341 286 0 24 chr9 37531408 37531492 -80331135 + L2 LINE L2 3187 3268 -4 25 31 0 0 chr9 37531777 37531809 -80330818 + AT_rich Low_complexity Low_complexity 1 32 0 1893 162 3 19 chr9 37531810 37532119 -80330508 + AluJb SINE Alu 1 304 -8 417 331 7 15 chr9 37532385 37532521 -80330106 + L2 LINE L2 1097 1231 -2083 407 291 102 64 chr9 37532947 37533308 -80329319 + L2 LINE L2 1249 1623 -1691 455 182 5 44 chr9 37533435 37533548 -80329079 + MLT1L LTR MaLR 390 434 -33 651 254 44 19 chr9 37533835 37534040 -80328587 + HAL1 LINE L1 1285 1494 -1013 1038 163 132 11 chr9 37534048 37534238 -80328389 + AluJb SINE Alu 1 213 -99 477 263 86 23 chr9 37534750 37534925 -80327702 - MIR SINE MIR -12 250 65 21 36 0 0 chr9 37535068 37535096 -80327531 + AT_rich Low_complexity Low_complexity 1 28 0 886 118 0 16 chr9 37535208 37535335 -80327292 + FLAM_C SINE Alu 1 125 -18 342 297 148 0 chr9 37535505 37535633 -80326994 + L2 LINE L2 3161 3307 -6 214 391 128 8 chr9 37536608 37536741 -80325886 - L2 LINE L2 -8 3264 3116 2485 62 0 7 chr9 37536879 37537188 -80325439 + AluY SINE Alu 1 307 -4 266 324 0 29 chr9 37537745 37537850 -80324777 + MIR SINE MIR 20 121 -141 288 213 67 0 chr9 37537865 37537940 -80324687 - MER116 DNA Mariner 0 80 1 187 274 131 12 chr9 37537941 37538025 -80324602 + MIR SINE MIR 154 247 -15 383 0 21 0 chr9 37538166 37538213 -80324414 + (TTG)n Simple_repeat Simple_repeat 1 48 0 1963 124 0 0 chr9 37538264 37538523 -80324104 - AluSx SINE Alu -53 259 1 280 263 68 17 chr9 37538768 37538886 -80323741 - L1ME LINE L1 -248 5873 5750 24 0 0 0 chr9 37538891 37538915 -80323712 + AT_rich Low_complexity Low_complexity 1 24 0 968 119 0 0 chr9 37538915 37539041 -80323586 + FLAM_C SINE Alu 1 126 -17 248 148 56 0 chr9 37539057 37539089 -80323538 - L1P3 LINE L1 -444 5728 5690 324 0 0 0 chr9 37539089 37539125 -80323502 + (TA)n Simple_repeat Simple_repeat 2 37 0 248 148 56 0 chr9 37539125 37539146 -80323481 - L1P3 LINE L1 -482 5690 5672 417 343 150 11 chr9 37539243 37539523 -80323104 - L2 LINE L2 0 3272 2954 1477 246 78 27 chr9 37539823 37540274 -80322353 - MLT1J LTR MaLR -29 482 9 526 286 53 72 chr9 37540709 37540902 -80321725 + MIR SINE MIR 4 192 -70 2076 153 0 3 chr9 37540902 37541215 -80321412 + AluSx SINE Alu 1 312 0 526 286 53 72 chr9 37541215 37541283 -80321344 + MIR SINE MIR 192 260 -2 341 238 149 42 chr9 37541979 37542070 -80320557 + MER58C DNA MER1_type 30 110 -2310 809 193 18 0 chr9 37542070 37542241 -80320386 + L1MA7 LINE L1 6118 6291 0 341 238 149 42 chr9 37542241 37542317 -80320310 + MER58C DNA MER1_type 110 215 0 205 325 95 12 chr9 37543068 37543237 -80319390 - MIR SINE MIR -73 189 7 471 325 108 17 chr9 37544925 37545156 -80317471 - MIR SINE MIR 0 262 11 219 297 20 69 chr9 37546378 37546479 -80316148 - MIR3 SINE MIR -21 187 92 22 35 0 0 chr9 37548409 37548438 -80314189 + AT_rich Low_complexity Low_complexity 1 29 0 946 179 22 18 chr9 37548445 37548669 -80313958 + L1MD3 LINE L1 7771 7995 0 2001 137 3 0 chr9 37548719 37549026 -80313601 + AluJb SINE Alu 1 308 -4 1759 175 52 48 chr9 37549041 37549227 -80313400 + L1MC4 LINE L1 6973 7157 -885 1661 129 86 4 chr9 37549227 37549507 -80313120 + AluSx SINE Alu 1 303 -9 1759 175 52 48 chr9 37549507 37549759 -80312868 + L1MC4 LINE L1 7157 7413 -629 863 253 94 81 chr9 37549768 37549876 -80312751 - HAL1 LINE L1 -1553 954 849 2481 44 0 0 chr9 37549876 37550171 -80312456 + AluY SINE Alu 2 296 -15 863 253 94 81 chr9 37550171 37550679 -80311948 - HAL1 LINE L1 -1658 849 330 1821 98 4 0 chr9 37550703 37550957 -80311670 + AluSx SINE Alu 1 255 -57 970 151 16 54 chr9 37550988 37551173 -80311454 + AluJo SINE Alu 1 178 -134 479 266 188 0 chr9 37551600 37551754 -80310873 - MIR SINE MIR 0 262 80 815 212 30 0 chr9 37551821 37551986 -80310641 + FRAM SINE Alu 4 173 -3 1130 280 72 40 chr9 37552042 37552321 -80310306 - L1MEd LINE L1 -4880 1239 970 1440 192 10 26 chr9 37552321 37552484 -80310143 - AluJo SINE Alu -10 302 145 207 0 0 0 chr9 37552484 37552507 -80310120 + (CTTG)n Simple_repeat Simple_repeat 4 26 0 1440 192 10 26 chr9 37552507 37552650 -80309977 - AluJo SINE Alu -167 145 1 1130 280 72 40 chr9 37552650 37553053 -80309574 - L1MEd LINE L1 -5149 970 535 1724 160 10 10 chr9 37553291 37553584 -80309043 + AluJo SINE Alu 3 295 -17 1453 197 4 0 chr9 37553696 37553965 -80308662 - AluJo SINE Alu -16 296 27 689 180 0 43 chr9 37553989 37554128 -80308499 + FLAM_C SINE Alu 1 133 0 355 325 71 0 chr9 37554166 37554335 -80308292 - L1ME4a LINE L1 -251 5870 5690 850 249 63 89 chr9 37554400 37554750 -80307877 - MER102b DNA MER1_type 0 341 1 1705 173 3 0 chr9 37555136 37555436 -80307191 - AluJb SINE Alu -11 301 1 2118 112 3 6 chr9 37555811 37556124 -80306503 - AluSx SINE Alu 0 312 1 964 117 7 0 chr9 37556292 37556437 -80306190 + AluSp/q SINE Alu 165 310 -3 1336 248 33 0 chr9 37556448 37556751 -80305876 + L2 LINE L2 2432 2744 -570 241 263 160 13 chr9 37556786 37556897 -80305730 - L1M4 LINE L1 -1947 5618 5476 1601 170 3 31 chr9 37556897 37557191 -80305436 - AluJb SINE Alu -26 286 1 241 263 160 13 chr9 37557191 37557235 -80305392 - L1M4 LINE L1 -2089 5476 5440 288 247 67 95 chr9 37557277 37557309 -80305318 - MLT1H LTR MaLR -16 574 543 1737 136 0 88 chr9 37557309 37557639 -80304988 + AluSx SINE Alu 1 301 -11 288 247 67 95 chr9 37557639 37557911 -80304716 - MLT1H LTR MaLR -47 543 126 1444 195 54 86 chr9 37558032 37558172 -80304455 - L1M2c LINE L1 -4340 3225 3082 2166 102 3 0 chr9 37558172 37558467 -80304160 - AluSx SINE Alu -16 296 1 1444 195 54 86 chr9 37558467 37558768 -80303859 - L1M2c LINE L1 -4483 3082 2798 1297 226 17 13 chr9 37558769 37559094 -80303533 - L1M2c LINE L1 -4610 2956 2634 2012 127 7 0 chr9 37559094 37559386 -80303241 - AluSq SINE Alu -19 294 1 1297 226 17 13 chr9 37559386 37559435 -80303192 - L1M2c LINE L1 -4932 2634 2282 4999 193 39 12 chr9 37559721 37560719 -80301908 - L1M2c LINE L1 -4290 2275 1251 22 35 0 0 chr9 37560776 37560805 -80301822 + AT_rich Low_complexity Low_complexity 1 29 0 1570 195 0 10 chr9 37560844 37561157 -80301470 + AluJo SINE Alu 3 312 0 839 173 0 0 chr9 37561193 37561350 -80301277 - FLAM_C SINE Alu 0 157 1 307 211 11 33 chr9 37561350 37561440 -80301187 + L1MEc LINE L1 1441 1528 -4868 2513 107 3 16 chr9 37561523 37561898 -80300729 - L1PB1 LINE L1 0 6151 5782 282 229 0 0 chr9 37561898 37561968 -80300659 + (TA)n Simple_repeat Simple_repeat 1 70 0 300 256 0 0 chr9 37561969 37562059 -80300568 - L1MC4 LINE L1 -1339 6703 6614 * 6230 163 16 56 chr9 37562043 37562059 -80300568 - L1P5 LINE L1 -359 6508 6493 189 0 0 0 chr9 37562059 37562080 -80300547 + (CA)n Simple_repeat Simple_repeat 2 22 0 6230 163 16 56 chr9 37562080 37562370 -80300257 - L1P5 LINE L1 -374 6493 6193 2096 105 0 3 chr9 37562370 37562698 -80299929 - AluSq SINE Alu 0 327 1 6230 163 16 56 chr9 37562698 37562900 -80299727 - L1P5 LINE L1 -674 6193 5985 2106 107 10 7 chr9 37562900 37563209 -80299418 - AluSg SINE Alu 0 310 1 6230 163 16 56 chr9 37563209 37563754 -80298873 - L1P5 LINE L1 -882 5985 5420 2066 109 0 7 chr9 37563754 37564048 -80298579 - AluSq SINE Alu -21 292 1 6230 163 16 56 chr9 37564048 37564954 -80297673 - L1P5 LINE L1 -1447 5420 4600 5029 119 92 7 chr9 37564948 37565893 -80296734 - L1P5 LINE L1 -3657 3205 2181 * 2130 117 3 0 chr9 37565893 37566202 -80296425 - AluSq SINE Alu -3 310 1 1135 135 78 26 chr9 37566202 37566395 -80296232 + MER51A LTR ERV1 432 634 0 4637 114 6 41 chr9 37566395 37567097 -80295530 - MER66B-int LTR ERV1 -741 5935 5259 14915 85 9 7 chr9 37567124 37569063 -80293564 - HERVK9 LTR ERVK -2626 3290 1347 4134 87 15 46 chr9 37569063 37569203 -80293424 - HERVK9 LTR ERVK -5305 611 468 2233 82 3 7 chr9 37569203 37569509 -80293118 - AluY SINE Alu -6 305 1 4134 87 15 46 chr9 37569509 37569981 -80292646 - HERVK9 LTR ERVK -5448 468 18 3385 125 8 8 chr9 37569984 37570495 -80292132 - MER9 LTR ERVK 0 511 1 808 150 8 0 chr9 37570500 37570620 -80292007 + AluSg/x SINE Alu 156 276 -34 216 0 0 0 chr9 37570621 37570645 -80291982 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 1352 154 125 45 chr9 37570648 37570960 -80291667 - THE1C LTR MaLR -35 340 4 9450 121 21 60 chr9 37570963 37571216 -80291411 - THE1C-int LTR MaLR 0 1580 1319 1769 172 3 0 chr9 37571216 37571513 -80291114 + AluSx SINE Alu 1 298 -14 9450 121 21 60 chr9 37571513 37572901 -80289726 - THE1C-int LTR MaLR -261 1319 3 1828 139 57 46 chr9 37572905 37573271 -80289356 - THE1C LTR MaLR -5 370 1 2003 69 69 7 chr9 37573271 37573559 -80289068 + L1MA1 LINE L1 5997 6302 0 9038 220 98 90 chr9 37573559 37577179 -80285448 - MER66B-int LTR ERV1 -3029 3647 1 2584 141 2 126 chr9 37577179 37577734 -80284893 - MER66B LTR ERV1 0 486 1 259 340 14 75 chr9 37577753 37577933 -80284694 - L1MEd LINE L1 -5587 532 374 1995 121 3 10 chr9 37577933 37578231 -80284396 + AluSx SINE Alu 5 300 -12 259 340 14 75 chr9 37578231 37578332 -80284295 - L1MEd LINE L1 -5745 374 268 295 197 61 0 chr9 37578482 37578548 -80284079 + MER6 DNA MER2_type -2 67 -77 914 145 21 48 chr9 37578549 37578735 -80283892 - FRAM SINE Alu 0 176 1 23 0 0 0 chr9 37578742 37578765 -80283862 + AT_rich Low_complexity Low_complexity 1 23 0 758 172 0 28 chr9 37578765 37578910 -80283717 - FLAM_C SINE Alu -1 142 2 377 180 16 0 chr9 37578917 37578978 -80283649 + MER6 DNA MER2_type 60 121 -744 331 197 61 0 chr9 37578998 37579064 -80283563 + MER6 DNA MER2_type 794 863 -2 689 210 45 13 chr9 37579067 37579224 -80283403 - L1MA10 LINE L1 -48 6286 6125 790 193 33 39 chr9 37579317 37579498 -80283129 - L1MA7 LINE L1 -170 6121 5942 2056 132 0 0 chr9 37579499 37579802 -80282825 - AluSx SINE Alu -9 303 1 389 304 119 9 chr9 37580000 37580237 -80282390 - L1 LINE L1 -1811 4335 4068 237 357 26 26 chr9 37580277 37580431 -80282196 - MER117 DNA MER1_type -42 155 2 265 294 91 52 chr9 37580455 37580686 -80281941 - L1 LINE L1 -2109 4037 3798 1903 149 17 0 chr9 37580692 37580988 -80281639 - AluJb SINE Alu -11 301 1 451 229 0 55 chr9 37581044 37581153 -80281474 - L2 LINE L2 -33 3239 3137 1589 167 43 17 chr9 37581483 37581783 -80280844 - AluJo SINE Alu -4 308 1 607 298 126 59 chr9 37581784 37581938 -80280689 - L1 LINE L1 -2663 3483 3341 2394 79 0 0 chr9 37581938 37582241 -80280386 + AluSc SINE Alu 1 303 -6 607 298 126 59 chr9 37582241 37582492 -80280135 - L1 LINE L1 -2805 3341 3051 507 269 19 58 chr9 37583340 37583462 -80279165 - MIR SINE MIR -106 156 40 2309 85 10 0 chr9 37583462 37583767 -80278860 - AluY SINE Alu -2 309 2 507 269 19 58 chr9 37583767 37583800 -80278827 - MIR SINE MIR -222 40 7 300 213 88 150 chr9 37583847 37583937 -80278690 - L1 LINE L1 -3200 2946 2852 1103 160 0 17 chr9 37583937 37584112 -80278515 - FAM SINE Alu -3 172 1 300 213 88 150 chr9 37584112 37584261 -80278366 - L1 LINE L1 -3294 2852 2722 801 161 17 52 chr9 37584476 37584650 -80277977 + AluJb SINE Alu 1 168 -144 2069 122 3 0 chr9 37585483 37585777 -80276850 - AluSx SINE Alu -17 295 1 457 317 71 6 chr9 37586786 37586969 -80275658 - MIR SINE MIR -14 248 54 2109 113 3 0 chr9 37586979 37587281 -80275346 - AluSg SINE Alu -7 303 1 474 235 148 96 chr9 37587295 37587755 -80274872 - MLT1L LTR MaLR -6 609 126 499 224 56 8 chr9 37588185 37588310 -80274317 - FLAM_A SINE Alu -2 131 1 28 0 0 0 chr9 37588392 37588420 -80274207 + AT_rich Low_complexity Low_complexity 1 28 0 201 39 0 0 chr9 37591103 37591129 -80271498 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 221 268 0 0 chr9 37592563 37592619 -80270008 + CT-rich Low_complexity Low_complexity 3 58 0 209 333 167 0 chr9 37593014 37593134 -80269493 - MER91C DNA MER1_type 0 140 1 2208 103 0 0 chr9 37593211 37593511 -80269116 - AluSx SINE Alu -12 300 1 220 267 120 27 chr9 37595719 37595869 -80266758 + L2 LINE L2 1806 1969 -1345 2219 105 7 16 chr9 37596115 37596421 -80266206 - AluSq SINE Alu -10 303 1 184 321 310 8 chr9 37598056 37598420 -80264207 + L2 LINE L2 1987 2460 -854 307 194 69 14 chr9 37598680 37598752 -80263875 - L3 LINE CR1 -437 1140 1065 517 277 28 51 chr9 37598883 37599060 -80263567 - MIR SINE MIR -85 177 5 798 274 177 30 chr9 37599233 37599634 -80262993 + L2 LINE L2 2854 3313 0 494 330 233 4 chr9 37600105 37600566 -80262061 - L3 LINE CR1 -249 1328 709 2263 120 0 13 chr9 37600569 37600885 -80261742 - AluSx SINE Alu 0 312 1 1999 123 17 24 chr9 37600893 37601186 -80261441 - AluJo SINE Alu -21 291 1 2222 103 24 0 chr9 37601880 37602170 -80260457 - AluSx SINE Alu -15 297 1 2254 124 0 0 chr9 37602321 37602619 -80260008 - AluSx SINE Alu -13 299 2 2354 95 7 0 chr9 37602738 37603034 -80259593 - AluSq SINE Alu -15 298 1 326 374 69 29 chr9 37603223 37603573 -80259054 + L2 LINE L2 2892 3255 -17 442 48 0 0 chr9 37603608 37603670 -80258957 + AluY SINE Alu 239 300 -11 203 296 197 30 chr9 37603708 37603911 -80258716 + L2 LINE L2 2301 2537 -777 2076 134 3 13 chr9 37603911 37604216 -80258411 - AluSx SINE Alu -10 302 1 2403 161 12 34 chr9 37608090 37608358 -80254269 + L1MB8 LINE L1 5040 5312 -866 2280 121 0 0 chr9 37608358 37608656 -80253971 + AluSc SINE Alu 1 298 -11 2403 161 12 34 chr9 37608656 37609185 -80253442 + L1MB8 LINE L1 5312 5965 -213 1244 83 0 0 chr9 37609195 37609340 -80253287 + AluSq/x SINE Alu 1 145 -168 234 288 62 0 chr9 37609355 37609501 -80253126 + L1ME4a LINE L1 5939 6093 -28 2099 136 14 0 chr9 37609526 37609820 -80252807 - AluJb SINE Alu -14 298 1 971 195 25 69 chr9 37610340 37610698 -80251929 - L1M LINE L1 -833 5313 4990 67 42 0 0 chr9 37610983 37611078 -80251549 + AT_rich Low_complexity Low_complexity 1 95 0 294 339 73 0 chr9 37611078 37611202 -80251425 - MIR3 SINE MIR -66 142 10 2301 94 0 3 chr9 37611225 37611511 -80251116 + AluSc SINE Alu 7 291 -18 327 270 184 16 chr9 37611923 37612108 -80250519 - MIR SINE MIR 0 262 47 1872 138 11 14 chr9 37612576 37612859 -80249768 - AluJo SINE Alu -13 299 18 258 229 0 0 chr9 37613343 37613413 -80249214 + (TATG)n Simple_repeat Simple_repeat 4 73 0 186 43 0 0 chr9 37614352 37614375 -80248252 + (TTCC)n Simple_repeat Simple_repeat 3 25 0 2316 96 20 3 chr9 37616130 37616433 -80246194 - AluSq SINE Alu -5 308 1 2517 65 0 13 chr9 37617124 37617434 -80245193 + AluY SINE Alu 1 306 -5 2271 112 0 0 chr9 37617548 37617843 -80244784 + AluSq SINE Alu 1 295 -18 924 148 21 151 chr9 37617851 37618181 -80244446 + L1M4 LINE L1 5047 5334 -812 2179 104 0 13 chr9 37618181 37618479 -80244148 + AluY SINE Alu 1 294 -17 291 344 80 24 chr9 37618485 37618697 -80243930 - L2 LINE L2 -541 2773 2550 771 286 22 4 chr9 37618702 37618933 -80243694 + MIR SINE MIR 2 236 -26 2419 86 0 3 chr9 37618949 37619250 -80243377 + AluY SINE Alu 1 300 -11 1978 134 10 23 chr9 37619668 37619967 -80242660 + AluSx SINE Alu 1 295 -17 2445 89 0 3 chr9 37620169 37620472 -80242155 + AluSx SINE Alu 1 302 -10 4410 157 27 11 chr9 37620658 37621498 -80241129 - L1MB8 LINE L1 -1 6177 5324 2224 112 20 3 chr9 37621498 37621801 -80240826 + AluSq SINE Alu 1 308 -5 186 43 0 0 chr9 37623556 37623579 -80239048 + (GGAA)n Simple_repeat Simple_repeat 3 25 0 258 229 0 0 chr9 37624518 37624588 -80238039 + (CATA)n Simple_repeat Simple_repeat 4 73 0 1872 138 11 14 chr9 37625072 37625355 -80237272 + AluJo SINE Alu 18 299 -13 327 270 184 16 chr9 37625823 37626008 -80236619 + MIR SINE MIR 47 262 0 2301 94 0 3 chr9 37626420 37626706 -80235921 - AluSc SINE Alu -18 291 7 294 339 73 0 chr9 37626729 37626853 -80235774 + MIR3 SINE MIR 10 142 -66 67 42 0 0 chr9 37626853 37626948 -80235679 + AT_rich Low_complexity Low_complexity 1 95 0 971 195 25 69 chr9 37627233 37627591 -80235036 + L1M4 LINE L1 4990 5330 -833 2099 136 14 0 chr9 37628111 37628405 -80234222 + AluJb SINE Alu 1 298 -14 887 211 16 16 chr9 37628589 37628774 -80233853 + AluJb SINE Alu 116 300 -12 1219 237 58 20 chr9 37628779 37628833 -80233794 - L2 LINE L2 -962 2352 2301 2162 131 0 16 chr9 37628833 37629147 -80233480 + AluSx SINE Alu 1 309 -3 1219 237 58 20 chr9 37629147 37629438 -80233189 - L2 LINE L2 -1013 2301 1994 1872 173 0 0 chr9 37629518 37629813 -80232814 - AluJb SINE Alu -13 299 5 2529 194 76 109 chr9 37629878 37630135 -80232492 + L1MC5 LINE L1 6669 6933 -1028 7711 170 18 105 chr9 37630135 37632057 -80230570 + MER52A LTR ERV1 1 1755 0 2529 194 76 109 chr9 37632057 37632082 -80230545 + L1MC5 LINE L1 6933 6957 -1004 2285 93 0 0 chr9 37632082 37632360 -80230267 + AluSx SINE Alu 3 280 -32 189 0 0 0 chr9 37632360 37632381 -80230246 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 2019 135 24 7 chr9 37632386 37632682 -80229945 + AluJb SINE Alu 1 301 -11 2529 194 76 109 chr9 37632682 37632969 -80229658 + L1MC5 LINE L1 6960 7255 -706 763 171 0 0 chr9 37632969 37633098 -80229529 - FLAM_A SINE Alu -4 129 1 2529 194 76 109 chr9 37633098 37633126 -80229501 + L1MC5 LINE L1 7255 7282 -679 1241 156 19 5 chr9 37633126 37633338 -80229289 + MER20 DNA MER1_type 1 215 -4 2529 194 76 109 chr9 37633338 37633619 -80229008 + L1MC5 LINE L1 7282 7571 -390 1747 139 21 14 chr9 37633619 37633906 -80228721 + AluJb SINE Alu 1 289 -23 2529 194 76 109 chr9 37633906 37634260 -80228367 + L1MC5 LINE L1 7571 7870 -91 1552 101 14 10 chr9 37634442 37634651 -80227976 - AluSq SINE Alu -23 290 81 188 0 0 69 chr9 37636682 37636711 -80225916 + (CCCG)n Simple_repeat Simple_repeat 4 30 0 21 82 0 0 chr9 37636804 37636853 -80225774 + GC_rich Low_complexity Low_complexity 1 49 0 40 49 0 0 chr9 37637057 37637118 -80225509 + GC_rich Low_complexity Low_complexity 1 61 0 546 212 74 49 chr9 37637868 37638071 -80224556 + MER3 DNA MER1_type 1 208 -1 2454 78 0 0 chr9 37642354 37642649 -80219978 + AluY SINE Alu 1 295 -16 2242 122 0 0 chr9 37643687 37643982 -80218645 + AluSx SINE Alu 1 295 -17 443 268 9 0 chr9 37643994 37644106 -80218521 + MER117 DNA MER1_type 14 126 -71 202 218 0 55 chr9 37644811 37644866 -80217761 + CT-rich Low_complexity Low_complexity 3 54 0 2052 117 0 51 chr9 37645106 37645422 -80217205 + AluSx SINE Alu 2 301 -11 219 217 11 98 chr9 37645561 37645653 -80216974 + L2 LINE L2 3229 3312 -1 472 276 30 0 chr9 37645670 37645804 -80216823 - L2 LINE L2 -587 2727 2590 231 358 57 26 chr9 37646030 37646104 -80216523 - L2 LINE L2 -2178 1136 1066 830 115 0 23 chr9 37646104 37646234 -80216393 + FLAM_C SINE Alu 2 128 -5 231 358 57 26 chr9 37646234 37646388 -80216239 - L2 LINE L2 -2248 1066 901 1036 164 0 0 chr9 37649173 37649332 -80213295 + AluJb SINE Alu 141 299 -13 1593 93 0 14 chr9 37651659 37651873 -80210754 + AluSq SINE Alu 91 301 -12 2016 116 62 0 chr9 37651934 37652226 -80210401 + AluSx SINE Alu 1 310 -2 1959 194 36 58 chr9 37652893 37653397 -80209230 + MLT1D LTR MaLR 1 493 -12 185 162 385 3 chr9 37653434 37653535 -80209092 + MIR SINE MIR 37 166 -66 403 315 144 88 chr9 37653546 37653897 -80208730 + L3 LINE CR1 410 740 -837 2089 118 21 0 chr9 37653897 37654203 -80208424 + AluSg SINE Alu 1 312 0 1723 194 6 13 chr9 37654209 37654523 -80208104 + AluJo SINE Alu 1 312 0 403 315 144 88 chr9 37654523 37654642 -80207985 + L3 LINE CR1 744 915 -662 269 234 104 13 chr9 37654663 37654740 -80207887 - MIR3 SINE MIR -27 181 98 2271 90 10 0 chr9 37655019 37655307 -80207320 + AluSx SINE Alu 1 291 -21 2093 90 60 0 chr9 37655332 37655649 -80206978 + AluSg SINE Alu 1 333 0 25 0 0 0 chr9 37655649 37655674 -80206953 + AT_rich Low_complexity Low_complexity 1 25 0 15139 101 43 9 chr9 37656002 37658242 -80204385 + Tigger1 DNA MER2_type 1 2165 -253 2092 79 57 11 chr9 37658242 37658522 -80204105 - AluY SINE Alu -18 293 1 2015 106 31 20 chr9 37658522 37658814 -80203813 - AluSx SINE Alu -17 295 1 15139 101 43 9 chr9 37658814 37658912 -80203715 + Tigger1 DNA MER2_type 2164 2418 0 1786 187 3 16 chr9 37659204 37659519 -80203108 - AluJo SINE Alu -1 311 1 662 167 0 45 chr9 37659519 37659651 -80202976 - FLAM_A SINE Alu -7 126 1 1285 97 0 12 chr9 37659695 37659860 -80202767 + AluY SINE Alu 1 163 -148 910 262 75 36 chr9 37659925 37660230 -80202397 + LTR16C LTR ERVL 5 321 -170 1998 138 7 13 chr9 37660255 37660560 -80202067 - AluJo SINE Alu -8 304 2 283 229 24 0 chr9 37660561 37660644 -80201983 - L1P5 LINE L1 -705 5446 5362 272 227 53 0 chr9 37660699 37660774 -80201853 - L1MC4a LINE L1 -1 7807 7729 209 238 0 0 chr9 37660819 37660861 -80201766 + (TA)n Simple_repeat Simple_repeat 2 43 0 1085 202 91 8 chr9 37660899 37661142 -80201485 - MLT2F LTR ERVL -59 604 342 2335 81 7 13 chr9 37661412 37661722 -80200905 - AluSx SINE Alu -4 308 1 578 219 19 45 chr9 37662011 37662166 -80200461 + MIR SINE MIR 6 156 -106 948 128 0 8 chr9 37662166 37662299 -80200328 + FLAM_C SINE Alu 1 132 -11 285 218 46 23 chr9 37662301 37662388 -80200239 + MIR SINE MIR 146 234 -28 460 319 46 15 chr9 37662447 37662902 -80199725 - L1MEc LINE L1 -1727 4488 4020 937 309 67 70 chr9 37662909 37662996 -80199631 - L1MEc LINE L1 -2483 3732 3646 2291 40 14 14 chr9 37662996 37663272 -80199355 + AluY SINE Alu 1 276 -35 251 0 59 0 chr9 37663277 37663311 -80199316 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 937 309 67 70 chr9 37663311 37663557 -80199070 - L1MEc LINE L1 -2573 3642 3397 2466 57 24 0 chr9 37663557 37663854 -80198773 - AluY SINE Alu -7 304 1 937 309 67 70 chr9 37663854 37663950 -80198677 - L1MEc LINE L1 -2818 3397 3302 2164 135 0 3 chr9 37663950 37664262 -80198365 - AluSx SINE Alu -1 311 1 937 309 67 70 chr9 37664262 37664305 -80198322 - L1MEc LINE L1 -2913 3302 3260 2135 125 0 35 chr9 37664305 37664624 -80198003 - AluJb SINE Alu -2 310 3 937 309 67 70 chr9 37664624 37664797 -80197830 - L1MEc LINE L1 -2955 3260 3093 408 280 6 19 chr9 37664892 37664908 -80197719 - L1MA10 LINE L1 0 6334 6319 748 239 22 0 chr9 37664908 37665088 -80197539 - L1ME1 LINE L1 -4 6162 5979 542 146 10 39 chr9 37665120 37665223 -80197404 - Tigger5 DNA MER2_type 0 2323 2224 345 143 0 18 chr9 37665217 37665273 -80197354 - Tigger5 DNA MER2_type -2268 55 1 * 492 320 68 37 chr9 37665290 37665584 -80197043 - L1MEc LINE L1 -3981 2415 2113 2461 78 0 0 chr9 37665742 37666037 -80196590 - AluSq SINE Alu -18 295 1 542 304 168 49 chr9 37666416 37667028 -80195599 - HAL1 LINE L1 -905 1602 918 981 142 75 47 chr9 37667463 37667675 -80194952 - MER20 DNA MER1_type -1 218 1 541 93 0 0 chr9 37668234 37668309 -80194318 + Alu SINE Alu 2 76 -234 792 152 8 18 chr9 37668383 37668551 -80194076 + LTR7 LTR ERV1 1 218 -232 839 171 70 21 chr9 37668720 37668907 -80193720 + LTR7 LTR ERV1 255 450 0 2043 199 40 24 chr9 37668907 37669359 -80193268 + HERVH LTR ERV1 1 459 -7254 3839 221 14 35 chr9 37669417 37670590 -80192037 + HERVH LTR ERV1 800 1807 -4847 21 71 0 0 chr9 37670590 37670632 -80191995 + AT_rich Low_complexity Low_complexity 1 42 0 387 258 57 75 chr9 37671704 37671863 -80190764 - MER21B LTR ERV1 -154 709 554 5623 55 42 24 chr9 37671869 37672635 -80189992 - LTR17 LTR ERV1 0 780 1 2353 55 0 0 chr9 37672635 37672927 -80189700 - HERV17 LTR ERV1 0 8626 8335 289 53 0 0 chr9 37672917 37672955 -80189672 - HERV17 LTR ERV1 -1078 7548 7511 * 11809 41 3 0 chr9 37672949 37674392 -80188235 - HERV17 LTR ERV1 -2607 6019 4572 2411 203 6 52 chr9 37674392 37674933 -80187694 + HERVH LTR ERV1 1600 2115 -5598 1941 127 3 31 chr9 37675260 37675571 -80187056 + AluSx SINE Alu 1 303 0 2284 99 6 19 chr9 37675629 37675941 -80186686 + AluSq SINE Alu 1 308 -5 318 316 121 22 chr9 37676003 37676234 -80186393 + L3 LINE CR1 1323 1576 -1 401 272 12 75 chr9 37676413 37676485 -80186142 - MLT1K LTR MaLR -3 585 510 2400 74 10 0 chr9 37676485 37676782 -80185845 + AluSp SINE Alu 1 300 -13 401 272 12 75 chr9 37676782 37676882 -80185745 - MLT1K LTR MaLR -78 510 424 2162 100 62 0 chr9 37676883 37677173 -80185454 + AluSx SINE Alu 1 308 -4 549 95 0 0 chr9 37677182 37677266 -80185361 + L1MA3 LINE L1 6222 6305 0 2320 91 10 10 chr9 37677443 37677750 -80184877 + AluSq SINE Alu 1 307 -6 342 0 0 0 chr9 37679233 37679271 -80183356 + (GA)n Simple_repeat Simple_repeat 1 38 0 356 277 141 48 chr9 37679414 37679892 -80182735 + L2 LINE L2 2524 3041 -231 725 230 136 25 chr9 37679926 37680161 -80182466 - MIR SINE MIR 0 262 2 409 121 0 0 chr9 37680313 37680371 -80182256 + AluJ/FLAM SINE Alu 1 58 -244 767 168 105 37 chr9 37683271 37683461 -80179166 + MER97c DNA MER1_type? 1 203 -887 1769 158 13 17 chr9 37683461 37683759 -80178868 - AluJo SINE Alu -15 297 1 383 267 17 9 chr9 37684081 37684197 -80178430 - AluSq/x SINE Alu -185 117 1 330 340 27 0 chr9 37684207 37684357 -80178270 + L1M4 LINE L1 2336 2489 -3657 330 207 60 35 chr9 37684381 37684497 -80178130 + Charlie8 DNA MER1_type 85 203 -2214 1451 103 54 188 chr9 37684623 37684753 -80177874 - MER1B DNA MER1_type -2373 337 191 2006 135 10 22 chr9 37684753 37685064 -80177563 - AluSx SINE Alu -5 307 1 1451 103 54 188 chr9 37685064 37685322 -80177305 - MER1B DNA MER1_type -2519 191 1 1020 148 0 0 chr9 37685413 37685606 -80177021 - AluSg/x SINE Alu 0 324 132 2161 121 3 0 chr9 37685606 37685903 -80176724 - AluSq SINE Alu -6 307 10 242 301 155 39 chr9 37685914 37686120 -80176507 - L2 LINE L2 0 3272 3043 446 237 0 68 chr9 37686298 37686416 -80176211 - L2 LINE L2 -5 3267 3158 2080 133 6 15 chr9 37686430 37686769 -80175858 + MER1B DNA MER1_type 1 336 -1 578 149 79 0 chr9 37686994 37687108 -80175519 + FLAM_A SINE Alu 7 129 -13 391 263 131 0 chr9 37687120 37687280 -80175347 - MIR SINE MIR -38 224 44 1574 106 21 8 chr9 37687464 37687701 -80174926 + AluJb SINE Alu 1 240 -72 244 289 0 72 chr9 37688799 37688896 -80173731 + MIR SINE MIR 121 210 -52 285 230 92 23 chr9 37688945 37689032 -80173595 - MIR SINE MIR -147 115 23 641 311 241 30 chr9 37689177 37689809 -80172818 + L3 LINE CR1 612 1437 -140 2397 98 0 0 chr9 37689809 37690105 -80172522 - AluSx SINE Alu -16 296 1 641 311 241 30 chr9 37690105 37690243 -80172384 + L3 LINE CR1 1437 1545 -32 832 110 0 66 chr9 37691638 37691774 -80170853 - AluJb SINE Alu -185 127 1 324 279 109 24 chr9 37694495 37694660 -80167967 - MIR SINE MIR -60 202 24 183 80 0 0 chr9 37695330 37695355 -80167272 + (CAGGG)n Simple_repeat Simple_repeat 1 25 0 344 233 97 34 chr9 37695549 37695725 -80166902 + L1ME4a LINE L1 5760 5946 -175 490 155 0 0 chr9 37695762 37695846 -80166781 + AluJ/FLAM SINE Alu 2 85 -227 23 0 0 0 chr9 37695857 37695880 -80166747 + AT_rich Low_complexity Low_complexity 1 23 0 205 83 0 28 chr9 37695985 37696021 -80166606 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 218 274 48 71 chr9 37696068 37696152 -80166475 - L2 LINE L2 -9 3304 3223 269 176 118 35 chr9 37696152 37696237 -80166390 + L1ME4a LINE L1 6030 6121 0 631 64 0 0 chr9 37697080 37697158 -80165469 + AluSp SINE Alu 2 79 -234 1812 74 5 0 chr9 37697196 37697413 -80165214 + AluSp SINE Alu 81 298 -15 624 328 13 69 chr9 37697414 37697893 -80164734 - L2 LINE L2 -25 3247 2796 638 256 72 22 chr9 37697908 37698131 -80164496 - MLT1L LTR MaLR -24 591 358 1026 252 189 36 chr9 37698241 37698792 -80163835 - L2 LINE L2 -492 2822 2188 1627 213 158 20 chr9 37698900 37699342 -80163285 + MLT1D LTR MaLR 3 505 0 1734 140 9 62 chr9 37700142 37700463 -80162164 + AluJo SINE Alu 1 304 -8 197 337 43 22 chr9 37700513 37700605 -80162022 + L2 LINE L2 3199 3292 -21 2411 149 26 96 chr9 37700707 37700733 -80161894 + Charlie1 DNA MER1_type 1583 1609 -1152 2286 80 0 20 chr9 37700733 37701035 -80161592 - AluSg SINE Alu -14 296 1 2411 149 26 96 chr9 37701035 37701505 -80161122 + Charlie1 DNA MER1_type 1609 2026 -735 2123 98 0 17 chr9 37701505 37701828 -80160799 - AluSx SINE Alu 0 312 1 2411 149 26 96 chr9 37701828 37701974 -80160653 + Charlie1 DNA MER1_type 2026 2181 -580 2186 93 0 20 chr9 37701989 37702291 -80160336 - AluSx SINE Alu -14 298 3 1852 150 0 29 chr9 37702298 37702612 -80160015 - AluJb SINE Alu -5 307 3 464 202 0 0 chr9 37702691 37702780 -80159847 + AluS SINE Alu 221 309 0 1461 136 22 0 chr9 37702911 37703139 -80159488 - Tigger3(Golem) DNA MER2_type 0 3029 2797 1536 132 4 43 chr9 37703144 37703424 -80159203 - AluJo SINE Alu -30 282 14 206 299 45 0 chr9 37703732 37703799 -80158828 - L2 LINE L2 -218 3054 2985 1518 74 9 32 chr9 37703812 37704029 -80158598 - AluY SINE Alu -15 296 85 * 2312 92 0 0 chr9 37704028 37704333 -80158294 - AluSx SINE Alu -7 305 1 317 310 63 25 chr9 37704625 37704783 -80157844 + L2 LINE L2 3141 3304 -9 1502 170 108 0 chr9 37704794 37705071 -80157556 + 7SLRNA srpRNA srpRNA 1 307 -13 204 179 0 0 chr9 37705089 37705103 -80157524 + A-rich Low_complexity Low_complexity 5 18 -25 2122 103 0 3 chr9 37705103 37705395 -80157232 + AluSx SINE Alu 21 311 -1 204 179 0 0 chr9 37705395 37705419 -80157208 + A-rich Low_complexity Low_complexity 17 43 0 207 315 68 62 chr9 37705456 37705602 -80157025 + L2 LINE L2 2625 2771 -543 390 283 14 55 chr9 37705721 37705778 -80156849 + L2 LINE L2 3127 3185 -87 1684 168 0 7 chr9 37705778 37706058 -80156569 - AluJb SINE Alu 0 312 35 390 283 14 55 chr9 37706058 37706145 -80156482 + L2 LINE L2 3185 3265 -7 203 344 6 28 chr9 37707562 37707742 -80154885 + GA-rich Low_complexity Low_complexity 3 178 0 2353 75 0 10 chr9 37708007 37708312 -80154315 - AluSp SINE Alu -11 302 1 245 206 32 16 chr9 37708425 37708488 -80154139 + Charlie8 DNA MER1_type 1360 1423 -994 243 233 117 29 chr9 37709604 37709707 -80152920 - L2 LINE L2 -93 3179 3068 1926 107 33 13 chr9 37709871 37710171 -80152456 - AluSx SINE Alu -6 306 1 2453 52 0 16 chr9 37711084 37711392 -80151235 + AluY SINE Alu 2 304 -7 802 95 0 0 chr9 37711732 37711837 -80150790 - AluSg SINE Alu -179 131 27 288 165 0 35 chr9 37711927 37712012 -80150615 + CT-rich Low_complexity Low_complexity 4 85 0 1388 140 8 47 chr9 37712448 37712705 -80149922 + AluJo SINE Alu 1 247 -65 945 208 0 0 chr9 37713392 37713546 -80149081 - FRAM SINE Alu -12 154 1 34 0 0 0 chr9 37714148 37714182 -80148445 + AT_rich Low_complexity Low_complexity 1 34 0 809 185 129 31 chr9 37714267 37714559 -80148068 - MLT1D LTR MaLR -63 404 1 254 71 0 24 chr9 37714606 37714648 -80147979 + (TG)n Simple_repeat Simple_repeat 2 42 0 262 327 0 10 chr9 37716290 37716394 -80146233 + GA-rich Low_complexity Low_complexity 1 103 0 626 223 102 12 chr9 37716913 37717079 -80145548 + MER5A DNA MER1_type 9 189 0 2205 98 3 0 chr9 37718989 37719286 -80143341 + AluSq SINE Alu 1 298 -15 693 183 48 0 chr9 37719549 37719675 -80142952 + FLAM_A SINE Alu 2 133 0 636 261 31 17 chr9 37719966 37720144 -80142483 + MIR SINE MIR 4 181 -62 294 308 8 42 chr9 37720208 37720328 -80142299 + MER5A DNA MER1_type 68 183 -6 22 35 0 0 chr9 37723052 37723081 -80139546 + GC_rich Low_complexity Low_complexity 1 29 0 231 222 19 56 chr9 37723755 37723863 -80138764 + (CCCCG)n Simple_repeat Simple_repeat 1 104 0 * 232 224 40 0 chr9 37723789 37723865 -80138762 + C-rich Low_complexity Low_complexity 1 79 0 219 247 24 47 chr9 37724134 37724219 -80138408 + G-rich Low_complexity Low_complexity 1 83 0 739 158 0 8 chr9 37724730 37724850 -80137777 - FLAM_A SINE Alu -12 121 3 581 286 66 96 chr9 37724861 37725374 -80137253 + L2 LINE L2 2766 3268 -4 1429 171 35 43 chr9 37725428 37725826 -80136801 - Charlie1 DNA MER1_type -16 2745 2351 2139 96 7 0 chr9 37725827 37726136 -80136491 - AluSx SINE Alu 0 311 1 1211 139 0 0 chr9 37726139 37726326 -80136301 - AluSg/x SINE Alu 0 310 124 2237 100 0 7 chr9 37726326 37726636 -80135991 - AluY SINE Alu -3 308 1 1571 178 0 30 chr9 37726643 37726947 -80135680 - AluJb SINE Alu -17 295 1 2778 150 26 89 chr9 37726947 37727041 -80135586 - Charlie1 DNA MER1_type -480 2281 2183 2202 92 0 20 chr9 37727041 37727345 -80135282 + AluSx SINE Alu 1 298 -14 2778 150 26 89 chr9 37727345 37727506 -80135121 - Charlie1 DNA MER1_type -578 2183 2013 2123 98 0 17 chr9 37727506 37727829 -80134798 + AluSx SINE Alu 1 312 0 2778 150 26 89 chr9 37727829 37728298 -80134329 - Charlie1 DNA MER1_type -748 2013 1602 2277 80 0 20 chr9 37728299 37728600 -80134027 + AluSg SINE Alu 1 295 -15 991 117 34 50 chr9 37728600 37728779 -80133848 - AluSg/x SINE Alu -3 309 134 579 187 19 0 chr9 37728779 37728886 -80133741 - Charlie1 DNA MER1_type -2652 109 1 239 175 159 0 chr9 37729009 37729072 -80133555 + L3 LINE CR1 1432 1504 -73 212 109 130 0 chr9 37729192 37729238 -80133389 + L2 LINE L2 3221 3272 0 836 179 0 0 chr9 37729307 37729452 -80133175 - FRAM SINE Alu -23 153 9 210 322 17 35 chr9 37732693 37732867 -80129760 + GA-rich Low_complexity Low_complexity 5 175 0 582 303 212 0 chr9 37733864 37734204 -80128423 - L2 LINE L2 -5 3308 2897 822 278 63 59 chr9 37734274 37734324 -80128303 - L2 LINE L2 -565 2749 2701 1484 169 26 11 chr9 37734324 37734591 -80128036 - AluJo SINE Alu -39 273 3 822 278 63 59 chr9 37734591 37735029 -80127598 - L2 LINE L2 -613 2701 2259 190 216 0 0 chr9 37735270 37735307 -80127320 - L2 LINE L2 -996 2318 2282 2257 77 0 0 chr9 37735501 37735788 -80126839 - AluSg SINE Alu 0 310 24 247 294 75 27 chr9 37735833 37735979 -80126648 - L2 LINE L2 -1303 2011 1859 1693 118 16 0 chr9 37736044 37736289 -80126338 + AluSx SINE Alu 6 254 -58 270 257 156 0 chr9 37741753 37741862 -80120765 - MER112 DNA MER1_type -131 129 4 1490 70 0 0 chr9 37742132 37742356 -80120271 + AluSc SINE Alu 98 321 0 2600 32 3 0 chr9 37742627 37742937 -80119690 + AluY SINE Alu 1 311 0 2297 73 3 38 chr9 37742951 37743268 -80119359 + AluY SINE Alu 1 306 -5 2140 94 0 19 chr9 37745384 37745691 -80116936 + AluSc SINE Alu 1 301 -8 309 298 122 16 chr9 37746403 37746422 -80116205 + HAL1 LINE L1 1069 1085 -1422 2101 125 7 0 chr9 37746422 37746726 -80115901 + AluSx SINE Alu 1 306 -6 309 298 122 16 chr9 37746726 37746894 -80115733 + HAL1 LINE L1 1085 1276 -1231 1559 95 70 11 chr9 37748816 37749089 -80113538 + L1MA5A LINE L1 6008 6296 -1 902 143 0 0 chr9 37749094 37749227 -80113400 + FLAM_C SINE Alu 1 133 0 192 289 44 22 chr9 37749960 37750050 -80112577 - MIR SINE MIR -98 164 73 680 134 18 0 chr9 37753640 37753752 -80108875 - AluSg/x SINE Alu -4 306 193 182 306 129 34 chr9 37755584 37755731 -80106896 - MIR SINE MIR -62 200 40 2436 77 3 7 chr9 37756124 37756423 -80106204 - AluSp SINE Alu -15 298 1 453 248 56 8 chr9 37757413 37757538 -80105089 + L2 LINE L2 3159 3289 -24 2385 76 14 0 chr9 37758940 37759228 -80103399 - AluY SINE Alu -19 292 1 182 311 95 14 chr9 37759518 37759592 -80103035 + MIR3 SINE MIR 97 176 -32 216 309 57 73 chr9 37761775 37761898 -80100729 - L2 LINE L2 -1 3271 3151 483 252 193 18 chr9 37762070 37762288 -80100339 - MIR SINE MIR 0 262 7 227 325 78 34 chr9 37762318 37762613 -80100014 - L2 LINE L2 -347 2967 2660 211 154 111 51 chr9 37765025 37765142 -80097485 + (CCCGG)n Simple_repeat Simple_repeat 4 127 0 573 318 178 46 chr9 37766566 37766670 -80095957 + L3 LINE CR1 634 723 -854 496 220 113 6 chr9 37766670 37766829 -80095798 - MER69A DNA AcHobo 0 177 2 573 318 178 46 chr9 37766829 37767008 -80095619 + L3 LINE CR1 723 877 -700 1652 137 16 23 chr9 37767008 37767264 -80095363 - AluJb SINE Alu -24 288 35 573 318 178 46 chr9 37767264 37767614 -80095013 + L3 LINE CR1 877 1179 -398 1876 179 3 0 chr9 37767614 37767910 -80094717 - AluJb SINE Alu -12 300 4 573 318 178 46 chr9 37767910 37768108 -80094519 + L3 LINE CR1 1179 1577 0 210 44 44 22 chr9 37768847 37768892 -80093735 + (TTTTTG)n Simple_repeat Simple_repeat 3 48 0 227 269 30 15 chr9 37770540 37770607 -80092020 - L2 LINE L2 -82 3190 3123 1995 68 4 20 chr9 37774362 37774612 -80088015 - AluY SINE Alu -60 251 6 384 345 138 24 chr9 37775172 37775655 -80086972 + L2 LINE L2 2671 3207 -65 1296 176 149 7 chr9 37775887 37776188 -80086439 - MER2 DNA MER2_type 0 344 1 881 245 30 9 chr9 37776221 37776454 -80086173 + MIR SINE MIR 10 247 -15 216 289 84 12 chr9 37777133 37777216 -80085411 + L2 LINE L2 3180 3268 -4 2329 101 0 9 chr9 37778128 37778444 -80084183 - AluSq SINE Alu 0 313 1 23 0 0 0 chr9 37778565 37778588 -80084039 + AT_rich Low_complexity Low_complexity 1 23 0 310 258 83 30 chr9 37778886 37779018 -80083609 + MIR SINE MIR 70 208 -54 2332 103 7 7 chr9 37779326 37779636 -80082991 + AluSq SINE Alu 1 310 -3 242 250 0 0 chr9 37779840 37779888 -80082739 + L2 LINE L2 3265 3312 -1 216 0 0 0 chr9 37782331 37782355 -80080272 + (CCG)n Simple_repeat Simple_repeat 3 26 0 808 243 80 0 chr9 37788111 37788337 -80074290 + MIR SINE MIR 18 261 -1 2152 111 3 46 chr9 37788482 37788833 -80073794 - MER1B DNA MER1_type 0 337 2 27 0 0 0 chr9 37790925 37790952 -80071675 + AT_rich Low_complexity Low_complexity 1 27 0 195 42 0 0 chr9 37791596 37791620 -80071007 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 2180 127 10 16 chr9 37792302 37792616 -80070011 + AluSx SINE Alu 1 312 0 201 268 0 0 chr9 37792918 37792974 -80069653 + T-rich Low_complexity Low_complexity 1 56 0 827 174 139 0 chr9 37793319 37793491 -80069136 - MER20 DNA MER1_type -1 218 23 419 279 78 0 chr9 37793597 37793726 -80068901 + MER5A DNA MER1_type 7 145 -44 1882 163 3 23 chr9 37794409 37794739 -80067888 + AluJb SINE Alu 1 312 0 1586 106 62 13 chr9 37794891 37795117 -80067510 + AluSx SINE Alu 1 237 -75 509 300 80 30 chr9 37795214 37795477 -80067150 + L3 LINE CR1 1214 1489 -88 413 341 29 0 chr9 37795923 37796061 -80066566 - MIR3 SINE MIR -64 144 3 2469 112 0 0 chr9 37796619 37796931 -80065696 + AluSx SINE Alu 1 312 0 818 177 7 0 chr9 37797026 37797167 -80065460 + AluJb SINE Alu 171 312 0 2935 187 24 89 chr9 37797516 37797863 -80064764 - L1ME2 LINE L1 0 6164 5796 2098 134 10 0 chr9 37797863 37798161 -80064466 + AluSx SINE Alu 1 301 -11 2935 187 24 89 chr9 37798161 37798399 -80064228 - L1ME2 LINE L1 -368 5796 5544 2044 157 0 0 chr9 37798399 37798692 -80063935 + AluJb SINE Alu 6 298 -14 2935 187 24 89 chr9 37798692 37798845 -80063782 - L1ME2 LINE L1 -620 5544 5383 2376 92 16 0 chr9 37798845 37799149 -80063478 - AluY SINE Alu -2 309 1 2935 187 24 89 chr9 37799149 37799679 -80062948 - L1ME2 LINE L1 -781 5383 4990 404 257 114 0 chr9 37799855 37799960 -80062667 - L2 LINE L2 -15 3298 3182 189 0 0 0 chr9 37800304 37800325 -80062302 + (T)n Simple_repeat Simple_repeat 1 21 0 276 297 40 30 chr9 37800679 37800780 -80061847 - MER117 DNA MER1_type -8 189 88 1977 116 11 4 chr9 37800853 37801121 -80061506 - AluSx SINE Alu -42 270 1 1572 136 163 0 chr9 37801124 37801382 -80061245 - AluJb SINE Alu -12 300 1 1001 269 113 112 chr9 37802404 37803513 -80059114 - L2 LINE L2 -2 3270 2159 423 0 0 0 chr9 37803513 37803560 -80059067 + (GA)n Simple_repeat Simple_repeat 1 47 0 1001 269 113 112 chr9 37803560 37803703 -80058924 - L2 LINE L2 -1113 2159 2018 411 309 65 57 chr9 37805181 37805517 -80057110 - L2 LINE L2 -1082 2232 1894 2564 47 7 0 chr9 37805532 37805830 -80056797 + AluY SINE Alu 1 300 -11 182 54 0 81 chr9 37805845 37805882 -80056745 - L2 LINE L2 -8 3305 3272 1996 147 10 16 chr9 37806127 37806441 -80056186 + AluJb SINE Alu 1 312 0 2326 109 3 0 chr9 37806519 37806822 -80055805 - AluSx SINE Alu -8 304 1 43 0 0 0 chr9 37806831 37806874 -80055753 + AT_rich Low_complexity Low_complexity 1 43 0 818 130 17 0 chr9 37806874 37806989 -80055638 - FLAM_C SINE Alu -26 117 1 2521 50 10 0 chr9 37807466 37807764 -80054863 + AluY SINE Alu 1 301 -10 767 232 197 27 chr9 37808205 37808571 -80054056 - LTR33A LTR ERVL -8 515 88 2045 149 3 3 chr9 37809305 37809607 -80053020 - AluSx SINE Alu -10 302 1 2415 84 0 0 chr9 37809734 37810031 -80052596 + AluY SINE Alu 1 297 -14 2527 81 0 0 chr9 37810142 37810449 -80052178 - AluY SINE Alu -4 307 1 23 0 0 0 chr9 37810495 37810518 -80052109 + AT_rich Low_complexity Low_complexity 1 23 0 798 155 9 0 chr9 37810523 37810639 -80051988 - FLAM_C SINE Alu -16 117 1 2377 82 0 7 chr9 37811038 37811330 -80051297 + AluSp SINE Alu 1 290 -23 1540 180 25 14 chr9 37812770 37813048 -80049579 - AluJo SINE Alu -21 291 11 1862 161 23 3 chr9 37813609 37813738 -80048889 + AluJb SINE Alu 1 126 -186 221 0 35 0 chr9 37813738 37813767 -80048860 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1862 161 23 3 chr9 37813767 37813941 -80048686 + AluJb SINE Alu 126 310 -2 237 226 18 9 chr9 37814395 37814464 -80048163 + G-rich Low_complexity Low_complexity 1 69 0 434 240 24 32 chr9 37814466 37814591 -80048036 + MER20B DNA MER1_type 57 180 -603 25 0 0 0 chr9 37814748 37814773 -80047854 + AT_rich Low_complexity Low_complexity 1 25 0 226 309 21 0 chr9 37814897 37814994 -80047633 + MER20B DNA MER1_type 519 617 -166 1273 125 0 0 chr9 37814995 37815179 -80047448 - AluSg/x SINE Alu 0 312 129 543 241 19 0 chr9 37815179 37815337 -80047290 + MER20B DNA MER1_type 623 783 0 2380 98 3 0 chr9 37815460 37815766 -80046861 - AluSx SINE Alu -5 307 1 2397 91 0 0 chr9 37815831 37816129 -80046498 - AluSp SINE Alu -15 298 1 5649 117 83 16 chr9 37816219 37817470 -80045157 - L1MA6 LINE L1 0 6300 4958 2126 92 6 63 chr9 37817471 37817788 -80044839 - AluSq SINE Alu -14 299 1 640 219 0 0 chr9 37817814 37817928 -80044699 - FLAM_A SINE Alu -19 114 1 1289 224 82 24 chr9 37817930 37818310 -80044317 - Charlie2 DNA MER1_type -2337 445 44 325 289 52 59 chr9 37818536 37818671 -80043956 - L2 LINE L2 -558 2756 2623 261 269 37 0 chr9 37818715 37818823 -80043804 + MER102a DNA MER1_type 219 330 0 261 365 72 0 chr9 37818846 37819013 -80043614 + L2 LINE L2 2491 2669 -645 2328 78 0 17 chr9 37819834 37820130 -80042497 + AluY SINE Alu 1 291 -20 1607 93 9 22 chr9 37820130 37820356 -80042271 - AluY SINE Alu -20 291 69 2217 117 0 0 chr9 37820493 37820784 -80041843 - AluSx SINE Alu -21 291 1 333 280 168 8 chr9 37820979 37821104 -80041523 - L1M4c LINE L1 -4043 2341 2197 2428 97 10 0 chr9 37821541 37821850 -80040777 + AluSx SINE Alu 1 312 0 2027 133 37 0 chr9 37822273 37822573 -80040054 - AluSx SINE Alu -1 311 1 738 156 23 0 chr9 37822581 37822709 -80039918 - FLAM_A SINE Alu -2 140 10 389 269 16 113 chr9 37823067 37823253 -80039374 + MIR3 SINE MIR 34 201 -7 185 351 85 0 chr9 37823578 37823672 -80038955 + L2 LINE L2 3195 3296 -17 206 282 0 51 chr9 37825406 37825523 -80037104 + C-rich Low_complexity Low_complexity 2 112 0 196 192 135 0 chr9 37827289 37827341 -80035286 - L2 LINE L2 -259 3054 2996 198 0 0 0 chr9 37828037 37828059 -80034568 + (TG)n Simple_repeat Simple_repeat 1 22 0 444 328 79 4 chr9 37828236 37828489 -80034138 + L2 LINE L2 2706 2977 -337 189 197 49 49 chr9 37828618 37828679 -80033948 + L3 LINE CR1 1513 1573 -4 620 272 37 52 chr9 37829080 37829352 -80033275 - L2 LINE L2 -4 3309 3042 1946 134 28 11 chr9 37829399 37829682 -80032945 - AluJb SINE Alu -19 293 6 261 333 167 16 chr9 37830249 37830375 -80032252 + L2 LINE L2 3124 3268 -4 200 108 0 27 chr9 37830931 37830968 -80031659 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 769 207 34 0 chr9 37831021 37831200 -80031427 + Charlie1 DNA MER1_type 52 236 -2525 749 145 7 0 chr9 37831188 37831326 -80031301 + Charlie1 DNA MER1_type 2622 2760 -1 * 350 42 21 0 chr9 37832615 37832663 -80029964 + (CA)n Simple_repeat Simple_repeat 2 50 0 2765 3 0 3 chr9 37836311 37836606 -80026021 - AluYa5 SINE Alu -17 294 1 1967 157 3 0 chr9 37837436 37837735 -80024892 - AluJb SINE Alu -12 300 1 482 268 43 8 chr9 37841015 37841155 -80021472 + MIR SINE MIR 31 176 -32 357 152 0 51 chr9 37841227 37841306 -80021321 - L1MC4 LINE L1 -193 7849 7775 221 283 0 0 chr9 37841468 37841514 -80021113 - L2 LINE L2 -1 3312 3267 340 341 0 0 chr9 37844675 37844845 -80017782 + (CAGAGA)n Simple_repeat Simple_repeat 2 171 0 235 214 0 0 chr9 37845060 37845116 -80017511 + (CTG)n Simple_repeat Simple_repeat 3 58 0 216 369 138 0 chr9 37847241 37847371 -80015256 + MIR3 SINE MIR 20 167 -41 2677 36 0 0 chr9 37849148 37849449 -80013178 - AluY SINE Alu 0 311 11 210 71 0 0 chr9 37849584 37849612 -80013015 + (T)n Simple_repeat Simple_repeat 1 28 0 206 204 102 0 chr9 37849613 37849662 -80012965 + L2 LINE L2 3217 3270 -2 238 315 47 31 chr9 37849882 37850009 -80012618 - L3 LINE CR1 -128 1449 1321 296 280 31 73 chr9 37850227 37850411 -80012216 - MIR SINE MIR -50 212 35 573 346 139 28 chr9 37850820 37851488 -80011139 + L2 LINE L2 1298 2039 -1275 2123 94 3 46 chr9 37852700 37853007 -80009620 - AluY SINE Alu -17 294 1 397 324 73 48 chr9 37854208 37854480 -80008147 + L2 LINE L2 2993 3271 -1 664 312 26 99 chr9 37855269 37855603 -80007024 + L2 LINE L2 2242 2504 -810 2261 105 13 3 chr9 37855603 37855909 -80006718 - AluSx SINE Alu -3 309 1 664 312 26 99 chr9 37855909 37856237 -80006390 + L2 LINE L2 2504 2855 -459 369 140 0 0 chr9 37856560 37856617 -80006010 + L2 LINE L2 3256 3312 -1 1525 179 43 14 chr9 37856882 37857162 -80005465 - AluJb SINE Alu -19 293 6 2718 51 0 0 chr9 37857872 37858183 -80004444 - AluY SINE Alu 0 311 1 428 235 15 61 chr9 37859871 37860003 -80002624 + L2 LINE L2 2174 2299 -1015 2382 103 0 0 chr9 37860007 37860309 -80002318 - AluSx SINE Alu -10 302 1 2258 113 3 0 chr9 37861213 37861524 -80001103 + AluSx SINE Alu 1 312 0 450 0 0 0 chr9 37861535 37861585 -80001042 + (CTA)n Simple_repeat Simple_repeat 3 52 0 25 0 0 0 chr9 37862527 37862552 -80000075 + GC_rich Low_complexity Low_complexity 1 25 0 506 328 0 0 chr9 37862633 37862878 -79999749 + C-rich Low_complexity Low_complexity 1 245 0 497 237 17 17 chr9 37863737 37863855 -79998772 - MIR SINE MIR -66 142 25 689 238 19 48 chr9 37864707 37864913 -79997714 - ERVL LTR ERVL -1472 4292 4093 390 121 0 0 chr9 37865357 37865423 -79997204 + (TG)n Simple_repeat Simple_repeat 1 66 0 360 0 0 0 chr9 37867237 37867277 -79995350 + (CA)n Simple_repeat Simple_repeat 2 41 0 240 114 0 0 chr9 37867411 37867446 -79995181 + MIR SINE MIR 113 147 -61 210 37 0 0 chr9 37867448 37867475 -79995152 + (TTTTTG)n Simple_repeat Simple_repeat 4 30 0 241 276 0 0 chr9 37870456 37870514 -79992113 - L2 LINE L2 -27 3245 3188 204 289 129 12 chr9 37870621 37870830 -79991797 - L2 LINE L2 -285 2987 2721 259 232 18 0 chr9 37870883 37870939 -79991688 + L2 LINE L2 3179 3235 -37 1103 288 62 70 chr9 37871521 37872220 -79990407 + L2 LINE L2 1981 2673 -641 304 237 144 0 chr9 37873053 37873150 -79989477 - L2 LINE L2 -3 3310 3200 215 316 107 15 chr9 37873321 37873527 -79989100 + L3 LINE CR1 1101 1325 -252 242 231 116 74 chr9 37873603 37873724 -79988903 - L2 LINE L2 0 3313 3188 451 333 20 0 chr9 37876199 37876352 -79986275 - L3 LINE CR1 -99 1478 1323 546 142 194 15 chr9 37876416 37876550 -79986077 - L1MC2 LINE L1 0 6344 6187 451 264 0 0 chr9 37876740 37876850 -79985777 - L3 LINE CR1 -568 1009 900 2107 127 0 3 chr9 37876977 37877269 -79985358 - AluSx SINE Alu -21 291 1 249 344 47 3 chr9 37877370 37877595 -79985032 - L3 LINE CR1 -708 869 578 214 280 0 27 chr9 37879273 37879348 -79983279 + G-rich Low_complexity Low_complexity 5 77 0 2493 93 0 0 chr9 37881868 37882178 -79980449 - AluSg SINE Alu 0 310 1 197 277 169 81 chr9 37882669 37882817 -79979810 - MIR SINE MIR -70 192 32 1726 125 21 113 chr9 37884315 37884651 -79977976 - AluJb SINE Alu -7 305 1 213 94 0 0 chr9 37887859 37887891 -79974736 + (TG)n Simple_repeat Simple_repeat 2 33 0 2484 75 0 0 chr9 37888605 37888899 -79973728 - AluSp SINE Alu -19 294 1 251 326 146 16 chr9 37889516 37890078 -79972549 - L2 LINE L2 -357 2957 2323 185 288 121 38 chr9 37890732 37890864 -79971763 - L2 LINE L2 -450 2864 2722 967 253 237 27 chr9 37890864 37891298 -79971329 - MLT2F LTR ERVL 0 663 115 2095 114 50 3 chr9 37891298 37891596 -79971031 - AluSx SINE Alu 0 312 1 967 253 237 27 chr9 37891596 37891647 -79970980 - MLT2F LTR ERVL -548 115 76 1289 242 36 62 chr9 37891811 37892229 -79970398 + MLT1I LTR MaLR 1 407 -2 361 268 16 24 chr9 37893254 37893381 -79969246 + MIR3 SINE MIR 71 196 -12 352 239 54 43 chr9 37893584 37893676 -79968951 - L2 LINE L2 0 3313 3221 281 311 19 0 chr9 37894806 37894909 -79967718 + MIR SINE MIR 47 151 -111 621 184 53 0 chr9 37895301 37895415 -79967212 - L2 LINE L2 0 3313 3194 1027 180 0 0 chr9 37896217 37896378 -79966249 + FRAM SINE Alu 5 165 -11 532 304 128 16 chr9 37896749 37897006 -79965621 - MLT1I LTR MaLR -7 402 117 493 284 142 35 chr9 37897641 37897873 -79964754 + MIR SINE MIR 4 260 -2 707 142 16 8 chr9 37899035 37899162 -79963465 + Tigger2 DNA MER2_type 1 128 -2590 * 1591 138 157 3 chr9 37899158 37899483 -79963144 + Tigger2 DNA MER2_type 2344 2718 0 1336 277 35 49 chr9 37899700 37900005 -79962622 - L1ME4a LINE L1 -1 6120 5812 2089 145 14 0 chr9 37900005 37900302 -79962325 + AluJo SINE Alu 1 301 -11 1336 277 35 49 chr9 37900302 37900646 -79961981 - L1ME4a LINE L1 -309 5812 5480 204 40 0 0 chr9 37901228 37901253 -79961374 + (CTG)n Simple_repeat Simple_repeat 1 25 0 2791 84 82 10 chr9 37901352 37901766 -79960861 + MLT2A1 LTR ERVL 1 444 0 308 320 78 47 chr9 37902149 37902508 -79960119 - L2 LINE L2 -360 2954 2585 398 208 48 28 chr9 37903697 37903817 -79958810 + MIR3 SINE MIR 36 160 -48 430 243 62 14 chr9 37903866 37904010 -79958617 + MER103 DNA DNA 13 163 -3 599 184 293 7 chr9 37904088 37904235 -79958392 - MER5A DNA MER1_type 0 189 1 240 217 0 0 chr9 37904282 37904328 -79958299 + L2 LINE L2 2924 2969 -303 235 287 217 57 chr9 37904604 37904761 -79957866 - MIR3 SINE MIR -3 205 24 322 245 11 69 chr9 37905245 37905433 -79957194 + C-rich Low_complexity Low_complexity 4 180 0 1057 234 66 18 chr9 37905581 37905915 -79956712 - L1ME1 LINE L1 -5 6161 5812 298 105 0 151 chr9 37905911 37905997 -79956630 - L1MB7 LINE L1 0 6184 6112 * 252 96 135 0 chr9 37905986 37906038 -79956589 + L1MB8 LINE L1 6079 6137 -41 * 3807 153 35 50 chr9 37906057 37906712 -79955915 - L1MB8 LINE L1 -50 6128 5486 2197 119 0 3 chr9 37906712 37907005 -79955622 + AluJb SINE Alu 1 292 -20 3807 153 35 50 chr9 37907005 37907144 -79955483 - L1MB8 LINE L1 -692 5486 5346 2004 172 0 7 chr9 37907164 37907472 -79955155 - AluSx SINE Alu -6 306 1 22 0 0 0 chr9 37907966 37907988 -79954639 + AT_rich Low_complexity Low_complexity 1 22 0 332 204 23 28 chr9 37908422 37908522 -79954105 - L1MB8 LINE L1 -1651 4495 4397 422 316 23 12 chr9 37908533 37908704 -79953923 - L1MEc LINE L1 -4548 1848 1676 1245 209 76 7 chr9 37958752 37959029 -79903598 - MLT2D LTR ERVL -118 296 1 1052 166 73 214 chr9 37959031 37959171 -79903456 + MLT1C LTR MaLR 44 202 -265 2300 83 0 7 chr9 37959171 37959473 -79903154 + AluSq SINE Alu 1 300 -13 1052 166 73 214 chr9 37959473 37959869 -79902758 + MLT1C LTR MaLR 202 466 -1 224 273 216 0 chr9 37960225 37960313 -79902314 - L2 LINE L2 -13 3259 3153 2233 116 0 0 chr9 37960546 37960856 -79901771 + AluSx SINE Alu 3 312 0 14774 119 13 18 chr9 37961160 37961373 -79901254 + Tigger1 DNA MER2_type 1 214 -2204 1490 149 67 8 chr9 37961373 37961628 -79900999 - AluJb SINE Alu -26 286 17 14774 119 13 18 chr9 37961628 37962593 -79900034 + Tigger1 DNA MER2_type 214 1182 -1236 2140 107 0 35 chr9 37962593 37962911 -79899716 + AluSx SINE Alu 1 307 -5 14774 119 13 18 chr9 37962911 37963223 -79899404 + Tigger1 DNA MER2_type 1182 1494 -924 2305 91 0 3 chr9 37963223 37963532 -79899095 + AluSc SINE Alu 1 308 -1 14774 119 13 18 chr9 37963532 37964280 -79898347 + Tigger1 DNA MER2_type 1494 2230 -188 318 51 0 0 chr9 37964277 37964316 -79898311 - tRNA-Thr-ACA tRNA tRNA -37 39 1 * 2031 104 4 0 chr9 37964341 37964659 -79897968 + AluSq SINE Alu 4 322 0 1826 150 7 7 chr9 37964673 37964979 -79897648 + AluJb SINE Alu 2 307 -5 2255 50 11 0 chr9 37964980 37965287 -79897340 + AluY SINE Alu 1 310 0 212 309 27 82 chr9 37965373 37965483 -79897144 - L2 LINE L2 -18 3254 3151 230 170 9 189 chr9 37965492 37965598 -79897029 + Charlie1 DNA MER1_type 6 92 -2669 954 202 34 0 chr9 37965605 37965783 -79896844 + MER82 DNA MER2_type 8 191 -462 * 1850 191 103 2 chr9 37965782 37966181 -79896446 + REP3 LTR ERV 124 562 0 245 234 62 76 chr9 37966815 37966849 -79895778 - L1ME4a LINE L1 -17 6104 6071 2222 93 0 7 chr9 37966849 37967151 -79895476 + AluSc SINE Alu 1 300 -9 245 234 62 76 chr9 37967151 37967261 -79895366 - L1ME4a LINE L1 -50 6071 5962 244 314 109 0 chr9 37967283 37967439 -79895188 - L1ME4a LINE L1 -211 5910 5738 489 268 32 79 chr9 37967484 37967674 -79894953 + MIR SINE MIR 1 181 -81 863 236 77 5 chr9 37967675 37967883 -79894744 + MER58A DNA MER1_type 1 223 -1 802 162 0 0 chr9 37968392 37968509 -79894118 + FLAM_C SINE Alu 1 117 -16 26 50 0 0 chr9 37968510 37968550 -79894077 + AT_rich Low_complexity Low_complexity 1 40 0 2059 115 0 10 chr9 37968554 37968849 -79893778 + AluSx SINE Alu 3 294 -18 1675 156 46 0 chr9 37968958 37969241 -79893386 + AluSx SINE Alu 1 296 -16 2180 113 3 0 chr9 37969243 37969554 -79893073 + AluSx SINE Alu 1 312 0 1500 176 13 36 chr9 37969737 37970044 -79892583 - AluJo SINE Alu -10 302 3 633 164 77 0 chr9 37970131 37970235 -79892392 + FLAM_A SINE Alu 11 122 -20 2146 110 0 7 chr9 37970506 37970815 -79891812 + AluSx SINE Alu 1 307 -5 809 134 0 24 chr9 37970840 37970967 -79891660 + FLAM_C SINE Alu 7 130 -13 372 77 0 0 chr9 37971246 37971298 -79891329 + (A)n Simple_repeat Simple_repeat 1 52 0 1699 174 0 3 chr9 37972461 37972743 -79889884 - AluJo SINE Alu -31 281 1 25 0 0 0 chr9 37972851 37972876 -79889751 + AT_rich Low_complexity Low_complexity 1 25 0 627 285 162 58 chr9 37973303 37973609 -79889018 - L2 LINE L2 -781 2533 2260 2395 56 0 7 chr9 37973609 37973915 -79888712 + AluY SINE Alu 1 304 -7 627 285 162 58 chr9 37973915 37974121 -79888506 - L2 LINE L2 -1054 2260 1968 1650 179 0 0 chr9 37974237 37974516 -79888111 + AluJo SINE Alu 1 279 -33 432 0 0 0 chr9 37974516 37974564 -79888063 + (CA)n Simple_repeat Simple_repeat 1 48 0 1800 113 77 0 chr9 37974698 37974972 -79887655 + AluSg SINE Alu 1 295 -15 2205 98 3 0 chr9 37975116 37975411 -79887216 + AluSx SINE Alu 1 296 -16 180 266 11 117 chr9 37975436 37975530 -79887097 + L2 LINE L2 2274 2357 -957 219 345 122 31 chr9 37975538 37975580 -79887047 + L2 LINE L2 2477 2514 -800 1558 110 8 61 chr9 37975580 37975844 -79886783 - AluSx SINE Alu -62 250 1 219 345 122 31 chr9 37975844 37975984 -79886643 + L2 LINE L2 2514 2640 -674 2488 62 0 0 chr9 37975984 37976293 -79886334 - AluY SINE Alu -2 309 1 219 345 122 31 chr9 37976293 37976463 -79886164 + L2 LINE L2 2640 2862 -452 2255 93 0 0 chr9 37976959 37977261 -79885366 + AluSx SINE Alu 1 302 -10 669 158 0 110 chr9 37977733 37977816 -79884811 - FLAM_A SINE Alu -171 131 69 2484 55 0 0 chr9 37977816 37978124 -79884503 + AluY SINE Alu 1 308 -3 669 158 0 110 chr9 37978124 37978186 -79884441 - FLAM_A SINE Alu -233 69 2 1527 196 0 3 chr9 37978370 37978661 -79883966 + AluJo SINE Alu 1 290 -22 2460 77 0 0 chr9 37978671 37978983 -79883644 + AluSx SINE Alu 1 312 0 350 352 151 21 chr9 37979000 37979384 -79883243 - L2 LINE L2 -792 2522 2089 2241 104 0 0 chr9 37979487 37979785 -79882842 - AluSx SINE Alu -14 298 1 1693 168 0 10 chr9 37979951 37980249 -79882378 - AluJb SINE Alu -17 295 1 1666 146 53 14 chr9 37980484 37980765 -79881862 - AluJb SINE Alu -20 292 1 581 45 0 0 chr9 37980783 37980850 -79881777 - U4 snRNA snRNA -78 67 1 216 0 0 0 chr9 37980916 37980940 -79881687 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2006 106 4 0 chr9 37980944 37981218 -79881409 - AluSx SINE Alu -37 275 1 2020 100 7 14 chr9 37981560 37981714 -79880913 - AluSx SINE Alu -23 289 136 2314 48 34 0 chr9 37981714 37982005 -79880622 - AluY SINE Alu -10 301 1 2020 100 7 14 chr9 37982005 37982141 -79880486 - AluSx SINE Alu -176 136 1 2010 161 0 56 chr9 37982333 37982402 -79880225 + MER1B DNA MER1_type 3 74 -2636 2136 91 23 26 chr9 37982402 37982710 -79879917 + AluSx SINE Alu 1 307 -5 2010 161 0 56 chr9 37982710 37982995 -79879632 + MER1B DNA MER1_type 74 337 0 433 223 66 66 chr9 37983165 37983240 -79879387 - MER117 DNA MER1_type 0 197 123 5927 62 31 17 chr9 37983240 37984009 -79878618 - LTR17 LTR ERV1 0 780 1 433 223 66 66 chr9 37984009 37984099 -79878528 - MER117 DNA MER1_type -73 124 32 1835 154 3 10 chr9 37984198 37984509 -79878118 + AluSx SINE Alu 1 309 -3 655 330 28 32 chr9 37984941 37985168 -79877459 + L3 LINE CR1 340 567 -1010 2036 104 28 0 chr9 37985168 37985456 -79877171 + AluSx SINE Alu 1 296 -16 655 330 28 32 chr9 37985456 37985510 -79877117 + L3 LINE CR1 567 620 -957 425 274 156 3 chr9 37985554 37985718 -79876909 + MIR SINE MIR 34 220 -42 340 324 9 19 chr9 37985827 37985935 -79876692 + L3 LINE CR1 1440 1546 -31 347 245 64 0 chr9 37986470 37986564 -79876063 - L1ME3A LINE L1 -13 6157 6058 2300 62 0 10 chr9 37986690 37986994 -79875633 - AluY SINE Alu -10 301 1 2013 166 100 66 chr9 37987021 37987063 -79875564 + MLT1D LTR MaLR 1 40 -465 2125 85 14 0 chr9 37987063 37987356 -79875271 - AluSg SINE Alu -13 297 1 2013 166 100 66 chr9 37987356 37987734 -79874893 + MLT1D LTR MaLR 40 443 -62 2637 39 0 0 chr9 37987734 37988045 -79874582 - AluY SINE Alu 0 311 1 2013 166 100 66 chr9 37988045 37988111 -79874516 + MLT1D LTR MaLR 443 505 0 516 301 34 70 chr9 37988135 37988331 -79874296 + L2 LINE L2 2271 2473 -841 900 186 6 12 chr9 37988331 37988498 -79874129 - FRAM SINE Alu 0 166 1 516 301 34 70 chr9 37988498 37988671 -79873956 + L2 LINE L2 2473 2715 -599 2213 116 0 3 chr9 37988671 37988982 -79873645 + AluSx SINE Alu 1 310 -2 516 301 34 70 chr9 37988982 37989027 -79873600 + L2 LINE L2 2715 2760 -554 433 169 0 0 chr9 37989303 37989374 -79873253 - AluJ/FLAM SINE Alu -213 99 29 598 178 0 25 chr9 37989422 37989540 -79873087 + FLAM_A SINE Alu 9 123 -19 2757 16 0 0 chr9 37990800 37991111 -79871516 - AluY SINE Alu 0 311 1 1511 93 15 0 chr9 37991504 37991708 -79870919 - AluSq SINE Alu -106 207 1 531 209 152 25 chr9 37991727 37991885 -79870742 + MIR SINE MIR 85 262 0 2272 94 13 0 chr9 37992089 37992396 -79870231 + AluSx SINE Alu 2 312 0 2113 102 7 7 chr9 37992408 37992711 -79869916 + AluSx SINE Alu 1 303 -9 231 174 72 0 chr9 37992767 37992836 -79869791 + (TCTA)n Simple_repeat Simple_repeat 2 75 0 365 90 0 75 chr9 37992976 37993043 -79869584 - Alu SINE Alu 0 302 241 1623 115 15 15 chr9 37993162 37993422 -79869205 + AluSx SINE Alu 38 297 -15 2320 68 0 0 chr9 37993671 37993963 -79868664 - AluSq SINE Alu -21 292 1 1649 156 17 34 chr9 37994093 37994388 -79868239 - AluJo SINE Alu -22 290 1 1107 125 0 0 chr9 37994391 37994577 -79868050 - AluSg/x SINE Alu 0 312 134 2114 110 3 0 chr9 37994577 37994877 -79867750 - AluSx SINE Alu -11 301 1 1366 107 5 10 chr9 37995055 37995260 -79867367 + AluSq SINE Alu 1 204 -109 464 176 0 0 chr9 37995367 37995441 -79867186 + AluS SINE Alu 222 295 -16 236 122 73 0 chr9 37995487 37995528 -79867099 + L1MC4 LINE L1 6660 6703 -1339 194 128 0 21 chr9 37995529 37995560 -79867067 + (TA)n Simple_repeat Simple_repeat 2 33 -14 1749 136 0 11 chr9 37995560 37995832 -79866795 - AluSx SINE Alu -31 281 13 194 128 0 21 chr9 37995832 37995847 -79866780 + (TA)n Simple_repeat Simple_repeat 33 47 0 26 30 0 0 chr9 37996001 37996034 -79866593 + AT_rich Low_complexity Low_complexity 1 33 0 2208 94 0 3 chr9 37996436 37996734 -79865893 + AluSg SINE Alu 1 297 -13 1070 156 0 18 chr9 37997137 37997304 -79865323 + FAM SINE Alu 5 168 -7 208 356 131 18 chr9 37997441 37997663 -79864964 - L2 LINE L2 -153 3119 2873 2126 120 0 0 chr9 37997740 37998041 -79864586 + AluSx SINE Alu 1 301 -11 535 327 134 3 chr9 37998048 37998369 -79864258 - L2 LINE L2 -666 2648 2286 290 275 0 0 chr9 37998540 37998609 -79864018 + MIR3 SINE MIR 92 160 -48 2301 77 0 19 chr9 37998814 37999124 -79863503 - AluY SINE Alu -7 304 1 574 322 57 4 chr9 37999576 37999803 -79862824 + MIR SINE MIR 20 258 -4 2124 98 0 30 chr9 38000097 38000402 -79862225 + AluSq SINE Alu 1 296 -17 2414 69 3 0 chr9 38000671 38000976 -79861651 - AluSp SINE Alu -7 306 1 2387 72 0 3 chr9 38001366 38001672 -79860955 + AluSc SINE Alu 1 305 -4 2282 103 0 0 chr9 38001752 38002063 -79860564 + AluSx SINE Alu 1 311 -1 246 155 17 35 chr9 38002068 38002126 -79860501 + L1ME3 LINE L1 6100 6156 -6 201 35 35 0 chr9 38003016 38003045 -79859582 + (TTTTA)n Simple_repeat Simple_repeat 2 60 0 1942 121 40 0 chr9 38003045 38003318 -79859309 - AluSx SINE Alu -28 284 1 2206 91 49 0 chr9 38003440 38003725 -79858902 - AluSx SINE Alu -13 299 1 2352 90 0 13 chr9 38003765 38004065 -79858562 - AluSg SINE Alu -14 296 1 1894 167 6 6 chr9 38004457 38004769 -79857858 + AluJo SINE Alu 1 312 0 1602 146 63 8 chr9 38004907 38005160 -79857467 - AluJo SINE Alu -45 267 1 1970 167 0 0 chr9 38005377 38005670 -79856957 + AluJb SINE Alu 2 294 -18 2139 107 16 26 chr9 38005680 38005988 -79856639 + AluSx SINE Alu 1 305 -7 2315 89 0 3 chr9 38006003 38006294 -79856333 + AluSc SINE Alu 1 290 -19 2093 120 0 62 chr9 38006542 38006867 -79855760 - AluSx SINE Alu -7 305 1 2265 113 0 7 chr9 38007307 38007617 -79855010 + AluSc SINE Alu 2 309 0 9549 189 30 45 chr9 38007617 38008948 -79853679 + L1M2 LINE L1 3200 4460 -1840 2223 125 6 0 chr9 38008948 38009259 -79853368 + AluSq SINE Alu 1 313 0 9549 189 30 45 chr9 38009259 38010574 -79852053 + L1M2 LINE L1 4460 5793 -507 207 0 0 0 chr9 38010574 38010597 -79852030 + (TG)n Simple_repeat Simple_repeat 2 24 0 207 215 0 0 chr9 38010596 38010661 -79851966 + (TA)n Simple_repeat Simple_repeat 1 65 0 2330 132 3 8 chr9 38010687 38011057 -79851570 + L1PB1 LINE L1 5784 6151 0 2151 123 3 0 chr9 38012220 38012513 -79850114 + AluSx SINE Alu 1 294 -18 1404 158 4 25 chr9 38013499 38013740 -79848887 + MER46A DNA MER2_type 1 236 0 2551 56 0 3 chr9 38015033 38015335 -79847292 - AluY SINE Alu -10 301 1 277 319 22 0 chr9 38015723 38015814 -79846813 + L2 LINE L2 1352 1444 -1870 856 231 110 127 chr9 38015817 38016934 -79845693 - L2 LINE L2 0 3313 2212 649 248 79 3 chr9 38016950 38017250 -79845377 - MLT1J LTR MaLR -18 493 97 1174 219 97 21 chr9 38017259 38017538 -79845089 - AluJo SINE Alu -2 300 1 468 139 0 30 chr9 38017552 38017653 -79844974 + (TTTC)n Simple_repeat Simple_repeat 3 100 0 300 88 263 0 chr9 38017653 38017710 -79844917 - HY3 scRNA scRNA -12 89 18 636 214 0 16 chr9 38017825 38017951 -79844676 + FLAM_C SINE Alu 2 125 -18 894 48 0 0 chr9 38017955 38018059 -79844568 + AluY SINE Alu 195 298 -13 1175 145 17 6 chr9 38018074 38018253 -79844374 + AluJo SINE Alu 113 293 -19 572 248 66 50 chr9 38018257 38018477 -79844150 - L2 LINE L2 -1145 2169 1943 2222 110 14 0 chr9 38018477 38018767 -79843860 + AluSx SINE Alu 1 294 -18 572 248 66 50 chr9 38018767 38018788 -79843839 - L2 LINE L2 -1371 1943 1924 2449 93 0 3 chr9 38019897 38020209 -79842418 - AluSx SINE Alu -1 311 1 26 0 0 0 chr9 38020500 38020526 -79842101 + AT_rich Low_complexity Low_complexity 1 26 0 416 110 12 37 chr9 38020550 38020632 -79841995 - L1MA8 LINE L1 -1 6290 6211 2402 91 10 0 chr9 38020668 38020966 -79841661 - AluSx SINE Alu -11 301 1 839 123 15 46 chr9 38020997 38021127 -79841500 - FLAM_C SINE Alu -16 127 2 2204 113 0 35 chr9 38022236 38022546 -79840081 + AluSx SINE Alu 1 299 -13 252 308 48 10 chr9 38022597 38022701 -79839926 + L1M4 LINE L1 4024 4131 -2015 192 209 52 96 chr9 38022763 38022878 -79839749 - MER5A DNA MER1_type -45 144 35 * 512 252 0 8 chr9 38022781 38022900 -79839727 + MER5B DNA MER1_type 60 177 -1 675 186 8 39 chr9 38022934 38023063 -79839564 - FLAM_A SINE Alu -8 125 1 2077 129 0 0 chr9 38023073 38023367 -79839260 - AluJb SINE Alu -18 294 1 364 267 99 89 chr9 38023431 38023838 -79838789 + L1M4 LINE L1 4339 4753 -1393 2072 136 0 3 chr9 38023838 38024133 -79838494 - AluJb SINE Alu -18 294 1 364 267 99 89 chr9 38024133 38024208 -79838419 + L1M4 LINE L1 4753 4826 -1320 1866 164 27 0 chr9 38024267 38024560 -79838067 - AluJb SINE Alu -11 301 1 2298 95 0 0 chr9 38024810 38025106 -79837521 + AluSx SINE Alu 1 296 -16 2202 235 68 69 chr9 38026123 38026426 -79836201 - L1M4 LINE L1 -5756 786 484 2808 3 0 3 chr9 38026426 38026725 -79835902 - AluYa5 SINE Alu -13 298 1 2202 235 68 69 chr9 38026725 38027033 -79835594 - L1M4 LINE L1 -6058 484 174 841 138 15 0 chr9 38027033 38027163 -79835464 - FLAM_C SINE Alu -1 132 1 2202 235 68 69 chr9 38027163 38027333 -79835294 - L1M4 LINE L1 -6368 174 5 1975 142 31 0 chr9 38027534 38027823 -79834804 - AluSx SINE Alu -14 298 1 523 262 52 35 chr9 38028182 38028411 -79834216 - LTR16C LTR ERVL -3 488 256 361 281 111 9 chr9 38029940 38030157 -79832470 - MIR SINE MIR -15 247 9 2174 60 32 35 chr9 38031890 38032221 -79830406 + AluY SINE Alu 1 330 0 2402 61 4 0 chr9 38032227 38032507 -79830120 + AluSx SINE Alu 1 281 -31 243 0 0 0 chr9 38032507 38032534 -79830093 + (CA)n Simple_repeat Simple_repeat 2 28 0 465 191 22 0 chr9 38032649 38032738 -79829889 - L1MA10 LINE L1 -53 6281 6191 377 234 81 24 chr9 38033136 38033260 -79829367 - MIR SINE MIR 0 262 132 2035 83 54 14 chr9 38033541 38033819 -79828808 - AluSx SINE Alu -23 289 1 1820 141 37 27 chr9 38034586 38034884 -79827743 + AluJb SINE Alu 1 301 -11 653 244 102 39 chr9 38035050 38035430 -79827197 - MLT1G LTR MaLR -12 543 115 678 184 179 11 chr9 38036100 38036279 -79826348 + MER3 DNA MER1_type 1 209 0 193 373 0 0 chr9 38036496 38036571 -79826056 + L3 LINE CR1 1103 1177 -400 205 161 0 0 chr9 38036876 38036907 -79825720 + polypyrimidine Low_complexity Low_complexity 2 32 0 276 130 0 0 chr9 38038740 38038786 -79823841 + (A)n Simple_repeat Simple_repeat 1 46 0 510 213 116 46 chr9 38039860 38040076 -79822551 - MIR SINE MIR -12 250 20 2254 114 0 3 chr9 38041943 38042250 -79820377 - AluSx SINE Alu -6 306 1 2503 72 0 3 chr9 38042802 38043106 -79819521 + AluY SINE Alu 1 303 -8 2326 90 0 35 chr9 38045737 38046047 -79816580 + AluSx SINE Alu 9 307 -5 479 231 103 51 chr9 38046125 38046320 -79816307 - MIR SINE MIR -50 212 8 1910 161 3 0 chr9 38046734 38047032 -79815595 - AluJb SINE Alu -13 299 1 1097 172 14 47 chr9 38047990 38048205 -79814422 - MER3 DNA MER1_type 0 209 2 304 263 0 0 chr9 38048275 38048355 -79814272 + MIR SINE MIR 67 146 -62 332 289 53 0 chr9 38048409 38048523 -79814104 + L1MC4 LINE L1 7793 7912 -130 200 341 111 15 chr9 38048880 38049015 -79813612 + MIR SINE MIR 29 176 -86 2365 89 0 16 chr9 38049108 38049424 -79813203 + AluY SINE Alu 1 311 0 1264 65 0 7 chr9 38049969 38050122 -79812505 - AluSq SINE Alu -12 301 150 1979 122 3 18 chr9 38050181 38050467 -79812160 - AluSx SINE Alu -30 282 1 2203 103 13 3 chr9 38050564 38050864 -79811763 + AluSx SINE Alu 1 303 -9 1712 163 11 3 chr9 38051686 38051969 -79810658 - AluJb SINE Alu -27 285 1 2305 96 3 10 chr9 38052213 38052526 -79810101 + AluSx SINE Alu 1 311 -1 2147 112 0 23 chr9 38052565 38052868 -79809759 - AluSx SINE Alu -16 296 1 2366 90 0 3 chr9 38052878 38053177 -79809450 - AluSx SINE Alu -14 298 1 236 311 78 59 chr9 38053178 38053397 -79809230 - L1ME LINE L1 -504 5617 5395 249 207 37 73 chr9 38053685 38053767 -79808860 - L1P LINE L1 -1140 5006 4928 2291 86 14 3 chr9 38054537 38054827 -79807800 + AluSx SINE Alu 3 295 -17 204 341 146 35 chr9 38055291 38055517 -79807110 - MIR SINE MIR 0 262 12 186 133 0 0 chr9 38055529 38055559 -79807068 + (A)n Simple_repeat Simple_repeat 1 30 0 248 318 102 0 chr9 38055859 38055947 -79806680 - L2 LINE L2 -3 3269 3173 225 289 200 7 chr9 38056089 38056224 -79806403 + MIR3 SINE MIR 33 193 -15 253 226 32 0 chr9 38056569 38056631 -79805996 + Charlie8 DNA MER1_type 2344 2407 -10 24 67 0 0 chr9 38057593 38057638 -79804989 + GC_rich Low_complexity Low_complexity 1 45 0 308 274 10 69 chr9 38058274 38058376 -79804251 + MIR SINE MIR 94 189 -73 24 0 0 0 chr9 38058432 38058456 -79804171 + AT_rich Low_complexity Low_complexity 1 24 0 188 265 60 60 chr9 38059682 38059765 -79802862 - L2 LINE L2 -332 2940 2858 2156 175 18 39 chr9 38060226 38060667 -79801960 - LTR3 LTR ERVK 0 432 1 2087 238 83 18 chr9 38060982 38061533 -79801094 + MLT1K LTR MaLR 2 588 0 2420 111 0 0 chr9 38061533 38061840 -79800787 + AluSx SINE Alu 1 307 -5 2534 68 3 7 chr9 38061905 38062215 -79800412 + AluSp SINE Alu 1 309 -4 2155 141 3 0 chr9 38062228 38062526 -79800101 + AluSx SINE Alu 1 299 -13 317 143 18 0 chr9 38062843 38062899 -79799728 - MLT2B1 LTR ERVL 0 520 464 1376 182 111 22 chr9 38062911 38063258 -79799369 - MLT1B LTR MaLR -9 558 4 238 218 0 18 chr9 38063261 38063316 -79799311 + (TATATG)n Simple_repeat Simple_repeat 6 59 0 228 273 45 23 chr9 38063316 38063404 -79799223 + L1MC4 LINE L1 6614 6703 -1339 * 248 333 0 0 chr9 38063360 38063450 -79799177 - L1MC4 LINE L1 -1339 6703 6614 229 330 0 22 chr9 38063454 38063545 -79799082 - L1MC4 LINE L1 -1339 6703 6615 368 275 0 22 chr9 38063546 38063637 -79798990 - L1MC4 LINE L1 -1339 6703 6615 349 282 47 0 chr9 38063642 38063727 -79798900 - L1MC4 LINE L1 -1339 6703 6615 1004 209 73 24 chr9 38063736 38063970 -79798657 - MLT2D LTR ERVL -20 534 313 1925 128 53 0 chr9 38063970 38064251 -79798376 + AluSx SINE Alu 1 296 -16 1004 209 73 24 chr9 38064251 38064353 -79798274 - MLT2D LTR ERVL -241 313 83 2346 106 0 0 chr9 38064353 38064645 -79797982 + AluSq SINE Alu 1 292 -21 1170 92 0 7 chr9 38064645 38064828 -79797799 + AluSg/x SINE Alu 132 313 0 24 41 0 20 chr9 38064858 38064878 -79797749 + AT_rich Low_complexity Low_complexity 1 20 -28 2247 134 0 0 chr9 38064878 38065184 -79797443 + AluSx SINE Alu 1 306 -6 24 41 0 20 chr9 38065184 38065212 -79797415 + AT_rich Low_complexity Low_complexity 20 48 0 2418 77 3 13 chr9 38065227 38065539 -79797088 - AluY SINE Alu -2 309 1 5964 121 28 32 chr9 38065547 38065705 -79796922 - L1MA3 LINE L1 0 6305 6148 2492 31 42 3 chr9 38065705 38065992 -79796635 - AluY SINE Alu -12 299 2 5964 121 28 32 chr9 38065992 38066079 -79796548 - L1MA3 LINE L1 -157 6148 6062 825 123 0 36 chr9 38066079 38066217 -79796410 - FLAM_C SINE Alu 0 133 1 5964 121 28 32 chr9 38066217 38066369 -79796258 - L1MA3 LINE L1 -243 6062 5911 2340 123 0 0 chr9 38066369 38066679 -79795948 - AluSx SINE Alu -2 310 1 5964 121 28 32 chr9 38066679 38067230 -79795397 - L1MA3 LINE L1 -394 5911 5359 2232 116 3 3 chr9 38067230 38067533 -79795094 - AluSg SINE Alu -7 303 1 5964 121 28 32 chr9 38067533 38068146 -79794481 - L1MA3 LINE L1 -946 5359 4739 3468 117 2 4 chr9 38068146 38068658 -79793969 - MER9 LTR ERVK 0 511 1 1579 194 16 19 chr9 38068658 38069025 -79793602 - L1 LINE L1 -3524 4041 3676 2102 119 14 10 chr9 38069025 38069319 -79793308 - AluSx SINE Alu -17 295 1 2034 76 40 74 chr9 38069319 38069340 -79793287 - L1 LINE L1 -3956 3609 3589 1833 151 128 18 chr9 38069340 38069724 -79792903 + MSTA LTR MaLR 1 426 -2 2034 76 40 74 chr9 38069724 38069762 -79792865 - L1 LINE L1 -3976 3589 3551 2265 102 3 0 chr9 38069762 38070055 -79792572 + AluY SINE Alu 3 296 -15 2034 76 40 74 chr9 38070055 38070374 -79792253 - L1 LINE L1 -4014 3551 3243 2368 99 0 7 chr9 38070374 38070676 -79791951 - AluSx SINE Alu -12 300 1 356 76 0 61 chr9 38070687 38070753 -79791874 - AluSx SINE Alu -1 301 240 1352 111 0 0 chr9 38070753 38070924 -79791703 - AluSx SINE Alu -141 171 1 1121 112 5 0 chr9 38070924 38071111 -79791516 - L1 LINE L1 -4469 3096 2909 1105 175 0 6 chr9 38071111 38071288 -79791339 - AluSg/x SINE Alu 0 310 135 13436 124 54 46 chr9 38071289 38071753 -79790874 - L1 LINE L1 -4631 2934 2475 2103 154 0 0 chr9 38071753 38072059 -79790568 - AluSx SINE Alu -6 306 1 13436 124 54 46 chr9 38072059 38072102 -79790525 - L1 LINE L1 -5090 2475 2434 2121 111 20 7 chr9 38072102 38072399 -79790228 - AluSx SINE Alu -11 301 1 13436 124 54 46 chr9 38072399 38072595 -79790032 - L1 LINE L1 -5131 2434 2241 2254 104 6 28 chr9 38072595 38072912 -79789715 + AluSq SINE Alu 1 310 -3 13436 124 54 46 chr9 38072912 38072928 -79789699 - L1 LINE L1 -5324 2241 2227 1920 113 6 69 chr9 38072928 38073247 -79789380 + AluSp SINE Alu 1 299 -14 13436 124 54 46 chr9 38073247 38074165 -79788462 - L1 LINE L1 -5338 2227 1265 1919 148 34 0 chr9 38074165 38074463 -79788164 - AluSx SINE Alu -2 310 3 13436 124 54 46 chr9 38074463 38075247 -79787380 - L1 LINE L1 -6300 1265 489 1506 93 16 0 chr9 38075248 38075442 -79787185 + AluSg/x SINE Alu 106 302 -8 1872 147 0 61 chr9 38075829 38076155 -79786472 + AluJo SINE Alu 2 307 -5 2293 92 3 16 chr9 38076472 38076778 -79785849 - AluSx SINE Alu -10 302 1 796 183 0 0 chr9 38076784 38076915 -79785712 - FLAM_C SINE Alu -2 131 1 434 203 70 39 chr9 38079768 38079896 -79782731 - MIR3 SINE MIR -29 179 48 373 243 10 68 chr9 38080251 38080354 -79782273 + MIR SINE MIR 85 181 -81 530 107 0 0 chr9 38080354 38080438 -79782189 - Alu SINE Alu -1 309 226 4678 49 12 40 chr9 38080438 38080761 -79781866 + LTR8 LTR ERV1 1 331 -360 2352 87 10 0 chr9 38080761 38081061 -79781566 - AluSp SINE Alu -10 303 1 4678 49 12 40 chr9 38081061 38081324 -79781303 + LTR8 LTR ERV1 331 570 -121 2280 90 0 40 chr9 38081324 38081647 -79780980 + AluSx SINE Alu 1 310 -2 4678 49 12 40 chr9 38081647 38081714 -79780913 + LTR8 LTR ERV1 570 637 -54 1441 90 0 0 chr9 38081883 38082061 -79780566 - AluSq SINE Alu -135 178 1 2366 81 7 0 chr9 38083163 38083461 -79779166 - AluSg SINE Alu -10 300 1 183 245 0 96 chr9 38084000 38084094 -79778533 - MIR3 SINE MIR -33 175 91 231 36 0 0 chr9 38084358 38084386 -79778241 + (TG)n Simple_repeat Simple_repeat 1 28 0 2040 118 49 7 chr9 38086803 38087090 -79775537 - AluSx SINE Alu -13 299 1 1466 284 130 31 chr9 38087270 38087927 -79774700 + L2 LINE L2 1920 2778 -535 2121 122 3 3 chr9 38087927 38088222 -79774405 - AluSx SINE Alu -4 308 14 1466 284 130 31 chr9 38088222 38088425 -79774202 + L2 LINE L2 2778 2960 -353 239 208 42 0 chr9 38088425 38088473 -79774154 + polypyrimidine Low_complexity Low_complexity 2 51 0 736 224 22 22 chr9 38088473 38088656 -79773971 - FRAM SINE Alu -1 175 1 1521 91 5 5 chr9 38088672 38088871 -79773756 + AluSp SINE Alu 1 199 -114 337 176 0 0 chr9 38088871 38088922 -79773705 - Alu SINE Alu -251 51 1 462 318 63 63 chr9 38088960 38089009 -79773618 + L2 LINE L2 3012 3060 -253 2113 139 10 0 chr9 38089009 38089310 -79773317 - AluSx SINE Alu -8 304 1 462 318 63 63 chr9 38089310 38089562 -79773065 + L2 LINE L2 3059 3313 0 2307 112 0 0 chr9 38089917 38090212 -79772415 - AluSx SINE Alu -17 295 1 476 296 0 0 chr9 38090383 38090498 -79772129 + L2 LINE L2 3198 3312 -1 1694 159 32 174 chr9 38090578 38090882 -79771745 + L1MB3 LINE L1 5444 5789 -385 2385 114 0 0 chr9 38090882 38091189 -79771438 + AluSx SINE Alu 1 307 -5 1694 159 32 174 chr9 38091189 38091348 -79771279 + L1MB3 LINE L1 5789 5969 -205 2374 119 0 0 chr9 38091348 38091658 -79770969 + AluSx SINE Alu 1 310 -2 2089 109 0 44 chr9 38091667 38091998 -79770629 + AluSg SINE Alu 1 318 0 1694 159 32 174 chr9 38091998 38092144 -79770483 + L1MB3 LINE L1 5812 5977 -197 1843 124 7 7 chr9 38092144 38092418 -79770209 - MER1B DNA MER1_type -65 274 1 849 163 6 6 chr9 38092418 38092578 -79770049 + L1MB3 LINE L1 6015 6174 -9 1811 175 10 16 chr9 38092578 38092755 -79769872 - AluJo SINE Alu 0 312 136 2387 115 0 0 chr9 38092755 38093067 -79769560 - AluSx SINE Alu 0 312 1 1811 175 10 16 chr9 38093067 38093203 -79769424 - AluJo SINE Alu -176 136 1 2308 93 10 0 chr9 38093392 38093682 -79768945 - AluSx SINE Alu -19 293 1 225 326 11 0 chr9 38094454 38094543 -79768084 + L1MC/D LINE L1 5768 5857 -1951 692 135 9 0 chr9 38094773 38094884 -79767743 + AluSg/x SINE Alu 174 285 -27 209 0 98 0 chr9 38094898 38094939 -79767688 + (TA)n Simple_repeat Simple_repeat 2 46 0 2244 117 7 10 chr9 38095067 38095376 -79767251 - AluSx SINE Alu -4 308 1 228 244 0 16 chr9 38095778 38095840 -79766787 + MIR SINE MIR 93 152 -63 1872 125 25 66 chr9 38095848 38096168 -79766459 - AluSq SINE Alu -6 307 1 2591 84 0 0 chr9 38096219 38096527 -79766100 - AluSq SINE Alu -5 308 1 230 287 23 23 chr9 38097398 38097485 -79765142 - MIR SINE MIR -95 113 27 380 275 84 51 chr9 38098338 38098516 -79764111 + MIR3 SINE MIR 20 203 -5 314 214 131 0 chr9 38098755 38098839 -79763788 - MER5A DNA MER1_type -80 109 15 * 638 241 12 31 chr9 38098833 38098934 -79763693 + MER5B DNA MER1_type 20 118 -60 2391 98 0 6 chr9 38098934 38099249 -79763378 - AluSp SINE Alu 0 313 1 638 241 12 31 chr9 38099249 38099309 -79763318 + MER5B DNA MER1_type 118 178 0 307 261 56 21 chr9 38099309 38099433 -79763194 - MIR3 SINE MIR -40 168 40 300 231 14 91 chr9 38100045 38100188 -79762439 + L2 LINE L2 3136 3267 -5 2297 115 0 0 chr9 38100734 38101029 -79761598 - AluSx SINE Alu -17 295 1 404 241 92 7 chr9 38101429 38101570 -79761057 - L2 LINE L2 -500 2814 2662 827 206 58 26 chr9 38101814 38102003 -79760624 + MLT2B3 LTR ERVL 1 195 -359 2747 207 76 2 chr9 38102029 38102609 -79760018 + MSTD-int LTR MaLR 1113 1735 0 986 192 108 45 chr9 38102609 38102937 -79759690 + MSTD LTR MaLR 1 394 -2 485 115 58 13 chr9 38103176 38103332 -79759295 + (TCCA)n Simple_repeat Simple_repeat 1 163 0 194 91 30 76 chr9 38103387 38103453 -79759174 + (TCCA)n Simple_repeat Simple_repeat 4 66 0 263 339 68 0 chr9 38103472 38103590 -79759037 - L2 LINE L2 -24 3248 3123 1037 155 6 0 chr9 38104535 38104716 -79757911 + L1MB2 LINE L1 5990 6171 0 700 292 214 3 chr9 38104967 38105309 -79757318 + L3 LINE CR1 1157 1570 -7 299 238 16 0 chr9 38106569 38106632 -79755995 - MIR SINE MIR -68 140 77 1226 125 0 0 chr9 38107157 38107341 -79755286 + AluJb SINE Alu 118 301 -11 759 245 28 47 chr9 38107707 38107919 -79754708 + MIR SINE MIR 55 262 0 186 301 41 70 chr9 38108127 38108261 -79754366 - MIR SINE MIR -60 148 24 351 249 167 35 chr9 38108847 38109051 -79753576 + MIR SINE MIR 5 234 -28 2112 96 0 0 chr9 38110490 38110772 -79751855 + AluSg SINE Alu 20 301 -9 288 285 109 7 chr9 38110939 38111076 -79751551 - MIR3 SINE MIR -27 181 31 22 35 0 0 chr9 38112051 38112080 -79750547 + GC_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chr9 38112306 38112343 -79750284 + GC_rich Low_complexity Low_complexity 1 37 0 220 339 23 0 chr9 38112855 38112985 -79749642 + L2 LINE L2 2834 2966 -306 797 186 51 0 chr9 38113402 38113558 -79749069 + MER7A DNA MER2_type 3 164 -182 802 94 14 58 chr9 38113602 38113740 -79748887 + FLAM_C SINE Alu 1 132 -11 297 0 0 0 chr9 38114246 38114279 -79748348 + (TG)n Simple_repeat Simple_repeat 2 34 0 1883 105 36 4 chr9 38114279 38114555 -79748072 - AluSx SINE Alu -27 285 1 382 219 62 34 chr9 38114563 38114709 -79747918 - L1MEc LINE L1 -4000 2396 2247 1959 113 0 35 chr9 38114709 38115019 -79747608 - AluSx SINE Alu -13 299 1 278 276 56 51 chr9 38115024 38115220 -79747407 + L1M4 LINE L1 2683 2879 -3267 1677 166 3 43 chr9 38115283 38115608 -79747019 + AluJo SINE Alu 1 312 0 340 331 38 51 chr9 38115615 38115772 -79746855 + MIR SINE MIR 12 166 -96 761 176 84 0 chr9 38115777 38115919 -79746708 - FRAM SINE Alu -12 154 1 2119 113 0 3 chr9 38116131 38116441 -79746186 + AluSx SINE Alu 2 310 -2 2200 107 0 0 chr9 38116996 38117294 -79745333 - AluSg SINE Alu -12 298 1 1672 176 7 10 chr9 38117472 38117773 -79744854 + AluJo SINE Alu 1 300 -12 1929 156 0 0 chr9 38117786 38118087 -79744540 - AluSx SINE Alu -11 301 1 2197 100 0 29 chr9 38118264 38118575 -79744052 - AluSx SINE Alu -10 302 1 23 33 0 0 chr9 38118587 38118617 -79744010 + AT_rich Low_complexity Low_complexity 1 30 0 358 298 128 48 chr9 38118889 38119178 -79743449 + L1M4 LINE L1 3120 3431 -2715 1386 106 4 31 chr9 38119189 38119446 -79743181 + AluSq SINE Alu 84 313 0 1213 178 6 132 chr9 38119449 38119791 -79742836 + AluJb SINE Alu 2 300 -2 455 301 89 42 chr9 38119794 38120319 -79742308 + L1M4 LINE L1 3856 4405 -1741 447 231 59 35 chr9 38120935 38121104 -79741523 + LTR33 LTR ERVL 1 173 -348 785 192 34 23 chr9 38121123 38121300 -79741327 + LTR33 LTR ERVL 343 521 0 1857 137 29 10 chr9 38121314 38121620 -79741007 - AluJb SINE Alu 0 312 1 221 299 80 43 chr9 38123260 38123447 -79739180 + L2 LINE L2 2889 3082 -190 228 156 22 0 chr9 38123521 38123567 -79739060 - Alu SINE Alu -12 154 114 560 257 68 33 chr9 38123637 38123967 -79738660 + MLT1I LTR MaLR 1 365 -44 1042 135 0 56 chr9 38124267 38124445 -79738182 - AluSc SINE Alu -13 296 129 26 0 0 0 chr9 38124543 38124569 -79738058 + AT_rich Low_complexity Low_complexity 1 26 0 863 159 0 0 chr9 38126390 38126522 -79736105 + FLAM_C SINE Alu 1 132 -1 398 308 77 7 chr9 38126900 38127043 -79735584 + MIR3 SINE MIR 40 192 -16 500 305 63 45 chr9 38128047 38128270 -79734357 + MIR SINE MIR 9 235 -27 437 239 87 18 chr9 38128576 38128707 -79733920 + MIR SINE MIR 6 153 -55 2459 47 0 3 chr9 38128745 38129041 -79733586 - AluY SINE Alu -16 295 1 27 0 0 0 chr9 38129046 38129073 -79733554 + AT_rich Low_complexity Low_complexity 1 27 0 618 296 52 26 chr9 38129160 38129393 -79733234 + L2 LINE L2 3075 3313 0 2271 85 3 0 chr9 38130999 38131293 -79731334 - AluSg SINE Alu -15 295 1 2301 73 7 0 chr9 38132567 38132868 -79729759 + AluSp SINE Alu 1 303 -10 21 36 0 0 chr9 38133170 38133198 -79729429 + AT_rich Low_complexity Low_complexity 1 28 0 342 293 113 0 chr9 38133532 38133638 -79728989 + L2 LINE L2 3192 3309 -4 2096 109 0 0 chr9 38133651 38133961 -79728666 - AluSx SINE Alu 0 310 1 1721 132 30 0 chr9 38134125 38134415 -79728212 - AluSx SINE Alu 0 306 9 638 233 117 49 chr9 38134467 38134690 -79727937 - L1MC/D LINE L1 -2183 5625 5388 1138 280 78 24 chr9 38134690 38135115 -79727512 + MLT1J2 LTR MaLR 1 448 -2 339 198 81 0 chr9 38135120 38135206 -79727421 - L1MC/D LINE L1 -2419 5389 5297 326 302 35 59 chr9 38135406 38135575 -79727052 - L1ME4a LINE L1 0 6121 5957 321 303 109 72 chr9 38136192 38136496 -79726131 + L2 LINE L2 2953 3267 -5 1437 69 0 0 chr9 38136849 38137038 -79725589 - AluY SINE Alu -8 303 115 2147 100 3 3 chr9 38137300 38137601 -79725026 + AluSp SINE Alu 1 301 -12 454 283 18 0 chr9 38138677 38138790 -79723837 - MIR3 SINE MIR 0 208 94 1790 163 3 0 chr9 38139138 38139432 -79723195 - AluJb SINE Alu -17 295 1 544 275 93 51 chr9 38140397 38140633 -79721994 + MIR SINE MIR 17 262 0 2172 89 0 54 chr9 38141370 38141686 -79720941 - AluSg SINE Alu -11 299 1 2387 69 0 7 chr9 38141867 38142171 -79720456 - AluY SINE Alu -9 302 1 21 0 0 0 chr9 38142180 38142201 -79720426 + AT_rich Low_complexity Low_complexity 1 21 0 24 35 0 53 chr9 38142430 38142456 -79720171 + AT_rich Low_complexity Low_complexity 1 27 -27 2120 114 0 10 chr9 38142456 38142753 -79719874 + AluSq SINE Alu 1 294 -19 24 35 0 53 chr9 38142753 38142783 -79719844 + AT_rich Low_complexity Low_complexity 27 54 0 2019 78 11 4 chr9 38142884 38143165 -79719462 - AluY SINE Alu -28 283 1 251 250 60 17 chr9 38143598 38143714 -79718913 - L1ME4a LINE L1 -1 6120 6000 561 209 58 22 chr9 38144141 38144280 -79718347 - L2 LINE L2 0 3313 3170 2098 110 3 0 chr9 38144288 38144579 -79718048 + AluSx SINE Alu 1 292 -20 1147 115 52 0 chr9 38144589 38144763 -79717864 + AluSg/x SINE Alu 128 310 0 225 197 0 45 chr9 38144781 38144847 -79717780 - L1MC4 LINE L1 -1339 6703 6641 365 318 47 0 chr9 38145216 38145323 -79717304 - MIR3 SINE MIR -15 193 82 269 219 35 88 chr9 38145477 38145591 -79717036 + MLT1J LTR MaLR 45 152 -359 275 196 54 0 chr9 38145704 38145760 -79716867 + MLT1J LTR MaLR 312 370 -141 2139 101 0 3 chr9 38146125 38146423 -79716204 - AluY SINE Alu -14 297 1 2117 88 48 0 chr9 38147846 38148141 -79714486 + AluSc SINE Alu 1 309 0 674 249 21 51 chr9 38149075 38149312 -79713315 - L1ME2 LINE L1 -1 6163 5934 1185 152 18 36 chr9 38149312 38149536 -79713091 + AluJo SINE Alu 1 220 -92 1327 166 49 0 chr9 38149560 38149825 -79712802 - Charlie1b DNA MER1_type -105 418 141 1861 151 0 0 chr9 38149825 38150151 -79712476 - AluJb SINE Alu 0 328 3 1282 239 203 28 chr9 38150153 38150734 -79711893 - L1ME3 LINE L1 -113 6049 5367 5427 125 22 58 chr9 38150743 38151127 -79711500 - L1MA8 LINE L1 -3 6288 5905 2382 231 26 80 chr9 38151127 38151744 -79710883 - L1PB3 LINE L1 -217 5937 5288 2244 103 0 13 chr9 38151744 38152055 -79710572 - AluSx SINE Alu -5 307 1 2382 231 26 80 chr9 38152055 38152152 -79710475 - L1PB3 LINE L1 -866 5288 5187 195 42 0 0 chr9 38152152 38152176 -79710451 + (TG)n Simple_repeat Simple_repeat 1 24 0 2382 231 26 80 chr9 38152176 38152526 -79710101 - L1PB3 LINE L1 -967 5187 4820 2147 85 3 3 chr9 38152526 38152842 -79709785 - AluSq SINE Alu 0 316 1 1651 153 14 20 chr9 38152850 38153009 -79709618 - AluJb SINE Alu -20 292 134 2239 74 27 17 chr9 38153009 38153308 -79709319 - AluSq SINE Alu -11 302 1 1651 153 14 20 chr9 38153308 38153442 -79709185 - AluJb SINE Alu -178 134 1 2382 231 26 80 chr9 38153442 38153505 -79709122 - L1PB3 LINE L1 -1246 4908 4843 1093 276 94 0 chr9 38153496 38153891 -79708736 - L1ME LINE L1 -2369 3711 3280 * 638 143 20 0 chr9 38153893 38153991 -79708636 - AluSg/x SINE Alu -20 289 190 2626 256 159 36 chr9 38153991 38155975 -79706652 - L1ME LINE L1 -3233 2847 440 717 324 34 42 chr9 38156100 38156412 -79706215 - L1ME LINE L1 -5617 453 145 2150 92 0 64 chr9 38156412 38156726 -79705901 + AluSx SINE Alu 8 301 -11 717 324 34 42 chr9 38156726 38156861 -79705766 - L1ME LINE L1 -5925 145 10 256 358 37 0 chr9 38157200 38157334 -79705293 + L2 LINE L2 2069 2207 -1107 27 92 0 0 chr9 38158577 38158653 -79703974 + AT_rich Low_complexity Low_complexity 1 76 0 556 248 0 8 chr9 38158719 38158836 -79703791 - L2 LINE L2 -1 3312 3197 1756 160 51 0 chr9 38158915 38159092 -79703535 - AluSx SINE Alu -4 308 109 333 0 0 0 chr9 38159092 38159129 -79703498 + (TG)n Simple_repeat Simple_repeat 2 38 0 1756 160 51 0 chr9 38159129 38159244 -79703383 - AluSx SINE Alu -203 109 1 2478 89 29 0 chr9 38159261 38159611 -79703016 - MER46B DNA MER2_type -1 235 1 2143 102 3 14 chr9 38160067 38160360 -79702267 - AluSx SINE Alu -22 290 1 205 259 0 56 chr9 38160951 38161005 -79701622 + L2 LINE L2 3258 3308 -5 3805 59 0 0 chr9 38161443 38161921 -79700706 - L1PA7 LINE L1 0 6154 5677 1720 49 364 169 chr9 38162323 38162809 -79699818 + LTR12 LTR ERV1 1 581 -133 1566 172 33 36 chr9 38163349 38163652 -79698975 - AluJo SINE Alu -5 307 6 1721 191 0 0 chr9 38164035 38164318 -79698309 - AluJo SINE Alu -23 289 7 398 114 14 0 chr9 38164335 38164405 -79698222 + (TTCC)n Simple_repeat Simple_repeat 4 74 0 2060 115 4 0 chr9 38164405 38164684 -79697943 - AluSx SINE Alu -32 280 1 1750 171 20 3 chr9 38164684 38164983 -79697644 - AluSx SINE Alu -8 304 1 537 293 18 66 chr9 38165010 38165345 -79697282 - L1ME LINE L1 -302 5819 5501 454 250 83 0 chr9 38165988 38166120 -79696507 + MER20 DNA MER1_type 74 216 -3 209 116 0 23 chr9 38166166 38166209 -79696418 + (CAAAA)n Simple_repeat Simple_repeat 5 46 0 1484 189 89 0 chr9 38166637 38166907 -79695720 + AluJb SINE Alu 1 294 -18 330 26 0 0 chr9 38166908 38166947 -79695680 + (GA)n Simple_repeat Simple_repeat 1 39 0 2297 94 3 0 chr9 38167247 38167545 -79695082 - AluSx SINE Alu -13 299 1 199 293 76 86 chr9 38167851 38168049 -79694578 + L2 LINE L2 2895 3090 -182 287 325 150 25 chr9 38168911 38169071 -79693556 - MER5A DNA MER1_type -5 184 5 277 336 0 19 chr9 38169073 38169180 -79693447 - MIR SINE MIR -64 144 40 429 208 10 0 chr9 38169511 38169607 -79693020 - L1ME3A LINE L1 -312 5858 5762 2252 85 3 0 chr9 38169902 38170236 -79692391 + AluSp SINE Alu 1 335 0 1279 173 0 9 chr9 38170462 38170682 -79691945 + MER20 DNA MER1_type 2 219 0 302 243 14 14 chr9 38170820 38170890 -79691737 - MIR3 SINE MIR -41 167 98 609 183 0 10 chr9 38170914 38171018 -79691609 + MER58A DNA MER1_type 1 103 -4 23 0 0 0 chr9 38171018 38171041 -79691586 + AT_rich Low_complexity Low_complexity 1 23 0 284 152 0 0 chr9 38171069 38171115 -79691512 - FLAM_A SINE Alu -8 125 80 497 221 48 62 chr9 38171152 38171297 -79691330 + MER58A DNA MER1_type 82 224 0 275 274 0 41 chr9 38172442 38172515 -79690112 + MER63 DNA MER1_type 992 1061 -1 879 262 113 43 chr9 38173835 38174285 -79688342 + MLT1H LTR MaLR 1 533 -16 325 316 146 59 chr9 38174523 38174776 -79687851 + L2 LINE L2 2995 3269 -3 307 278 0 14 chr9 38175076 38175148 -79687479 + MER63 DNA MER1_type 677 747 -89 * 308 183 0 73 chr9 38175129 38175211 -79687416 + MER63 DNA MER1_type 970 1045 -16 384 355 56 28 chr9 38175434 38175758 -79686869 - L2 LINE L2 -558 2756 2424 486 46 0 0 chr9 38175818 38175883 -79686744 + (TG)n Simple_repeat Simple_repeat 2 66 0 191 344 73 10 chr9 38176029 38176125 -79686502 - L2 LINE L2 -1037 2277 2176 417 320 147 0 chr9 38178351 38178501 -79684126 - L3 LINE CR1 -3 1574 1403 21 0 0 0 chr9 38178869 38178890 -79683737 + AT_rich Low_complexity Low_complexity 1 21 0 497 276 102 58 chr9 38179051 38179614 -79683013 - L1MEc LINE L1 -4729 1581 1044 1734 94 5 5 chr9 38179614 38179838 -79682789 - AluSx SINE Alu -88 224 1 497 276 102 58 chr9 38179838 38180602 -79682025 - L1MEc LINE L1 -5266 1044 102 24 53 0 0 chr9 38183528 38183566 -79679061 + AT_rich Low_complexity Low_complexity 1 38 0 243 0 0 0 chr9 38183991 38184018 -79678609 + (T)n Simple_repeat Simple_repeat 1 27 0 344 282 81 24 chr9 38184161 38184285 -79678342 - MIR SINE MIR -38 224 94 2284 100 0 0 chr9 38186102 38186392 -79676235 - AluSx SINE Alu -20 292 3 2012 136 7 0 chr9 38186469 38186763 -79675864 + AluSx SINE Alu 1 296 -16 2209 124 3 0 chr9 38186788 38187086 -79675541 + AluSq SINE Alu 3 301 -12 245 239 0 0 chr9 38187687 38187733 -79674894 - L2 LINE L2 -17 3255 3210 405 0 0 0 chr9 38187808 38187853 -79674774 + (TG)n Simple_repeat Simple_repeat 2 46 0 310 288 234 46 chr9 38188347 38188778 -79673849 - L2 LINE L2 -950 2364 1853 801 164 8 0 chr9 38188830 38188958 -79673669 + FLAM_C SINE Alu 1 129 -4 2286 101 3 0 chr9 38189775 38190072 -79672555 - AluSx SINE Alu -14 298 1 7242 11 1 0 chr9 38190532 38191402 -79671225 - L1PA3 LINE L1 0 6155 5333 1737 178 0 10 chr9 38191402 38191711 -79670916 - AluJb SINE Alu -6 306 1 488 140 47 19 chr9 38192333 38192440 -79670187 + L1MC5 LINE L1 7130 7239 -722 951 182 53 5 chr9 38192490 38192677 -79669950 - MER3 DNA MER1_type -13 196 1 1408 225 113 33 chr9 38192677 38193228 -79669399 + L1MC5 LINE L1 7330 7924 -37 297 177 21 52 chr9 38193232 38193328 -79669299 + GA-rich Low_complexity Low_complexity 2 94 0 782 296 12 24 chr9 38193558 38193805 -79668822 + MIR SINE MIR 5 248 -14 193 286 111 0 chr9 38193844 38193907 -79668720 + MIR3 SINE MIR 136 205 -3 28 0 0 0 chr9 38194527 38194555 -79668072 + AT_rich Low_complexity Low_complexity 1 28 0 288 222 37 102 chr9 38194593 38194701 -79667926 - L2 LINE L2 -10 3303 3203 22 0 0 0 chr9 38194728 38194750 -79667877 + AT_rich Low_complexity Low_complexity 1 22 0 2221 232 64 31 chr9 38196044 38196713 -79665914 - L1MC4 LINE L1 -18 8024 7334 835 150 0 8 chr9 38196762 38196895 -79665732 - FLAM_C SINE Alu 0 133 2 409 274 195 0 chr9 38197100 38197213 -79665414 - L2 LINE L2 -5 3267 3133 315 307 18 0 chr9 38197217 38197331 -79665296 - MIR SINE MIR 0 262 147 446 309 198 26 chr9 38197359 38197980 -79664647 - L2 LINE L2 -946 2368 1641 3217 253 162 21 chr9 38198131 38198204 -79664423 - L2 LINE L2 -51 3262 3201 231 114 0 0 chr9 38198204 38198239 -79664388 + (TA)n Simple_repeat Simple_repeat 2 36 0 3217 253 162 21 chr9 38198239 38199486 -79663141 - L2 LINE L2 -112 3201 1769 1874 242 62 74 chr9 38199526 38199633 -79662994 + MER21B LTR ERV1 24 131 -732 1137 121 167 5 chr9 38199633 38199831 -79662796 - MER30 DNA MER1_type 0 230 1 1874 242 62 74 chr9 38199831 38200443 -79662184 + MER21B LTR ERV1 131 735 -128 241 371 34 0 chr9 38200503 38200592 -79662035 - L2 LINE L2 -44 3228 3137 246 301 83 38 chr9 38200655 38200788 -79661839 - L2 LINE L2 -1903 1411 1273 312 27 0 0 chr9 38201083 38201120 -79661507 + (TA)n Simple_repeat Simple_repeat 1 37 0 1832 128 49 21 chr9 38201632 38201920 -79660707 - AluSx SINE Alu -16 296 1 313 257 97 9 chr9 38202437 38202550 -79660077 - L1ME4a LINE L1 -30 6091 5969 24 0 0 0 chr9 38203265 38203289 -79659338 + AT_rich Low_complexity Low_complexity 1 24 0 192 125 0 0 chr9 38203703 38203735 -79658892 + (CATATA)n Simple_repeat Simple_repeat 3 34 0 35 71 0 0 chr9 38203829 38203899 -79658728 + AT_rich Low_complexity Low_complexity 1 70 0 252 211 63 106 chr9 38204057 38204199 -79658428 - L1MC4 LINE L1 -43 7999 7864 182 315 54 45 chr9 38204266 38204377 -79658250 + L2 LINE L2 2675 2786 -528 5304 137 26 17 chr9 38204736 38205905 -79656722 + L1P5 LINE L1 4119 5327 -824 2377 58 3 49 chr9 38205905 38206231 -79656396 + AluY SINE Alu 1 311 0 5304 137 26 17 chr9 38206231 38206700 -79655927 + L1P5 LINE L1 5327 5790 -361 3023 81 50 20 chr9 38206694 38206779 -79655848 + L1PB1 LINE L1 5695 5776 -375 378 0 0 0 chr9 38206779 38206821 -79655806 + (CA)n Simple_repeat Simple_repeat 2 43 0 3023 81 50 20 chr9 38206821 38207177 -79655450 + L1PB1 LINE L1 5776 6149 -2 230 266 38 13 chr9 38208147 38208226 -79654401 + L2 LINE L2 3229 3309 -4 814 260 158 46 chr9 38208346 38209168 -79653459 + L2 LINE L2 2369 3312 -1 21 0 0 0 chr9 38209203 38209224 -79653403 + AT_rich Low_complexity Low_complexity 1 21 0 188 260 0 20 chr9 38210105 38210155 -79652472 - MIR3 SINE MIR -11 197 149 1155 128 6 0 chr9 38210224 38210403 -79652224 - L1MB7 LINE L1 -9 6175 5996 301 266 28 28 chr9 38210406 38210417 -79652210 + MER103 DNA DNA 48 58 -108 191 61 30 0 chr9 38210417 38210450 -79652177 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 301 266 28 28 chr9 38210450 38210547 -79652080 + MER103 DNA DNA 57 156 -10 199 262 148 57 chr9 38210567 38210689 -79651938 - MIR SINE MIR -42 220 88 249 286 13 26 chr9 38210781 38210858 -79651769 - MIR3 SINE MIR -52 156 81 1629 136 73 7 chr9 38210942 38211215 -79651412 - AluJb SINE Alu -21 291 1 21 0 0 0 chr9 38211223 38211244 -79651383 + AT_rich Low_complexity Low_complexity 1 21 0 192 125 0 0 chr9 38212294 38212326 -79650301 + (CCG)n Simple_repeat Simple_repeat 3 34 0 269 244 87 9 chr9 38212521 38212636 -79649991 - MIR3 SINE MIR -9 199 76 27 0 0 0 chr9 38212857 38212884 -79649743 + AT_rich Low_complexity Low_complexity 1 27 0 1770 139 0 7 chr9 38212892 38213165 -79649462 - AluJb SINE Alu -41 271 1 241 218 105 24 chr9 38213493 38213617 -79649010 - L1MC5 LINE L1 -309 7652 7519 1024 248 71 24 chr9 38213717 38214011 -79648616 - MER93a LTR ERV1 -3 399 92 809 146 0 29 chr9 38214197 38214334 -79648293 + FLAM_C SINE Alu 1 133 0 1567 94 0 0 chr9 38214463 38214654 -79647973 + AluSg SINE Alu 1 191 -119 1648 152 27 0 chr9 38214663 38214926 -79647701 - L1MC1 LINE L1 -5 6328 6059 245 211 0 0 chr9 38214926 38214978 -79647649 + Charlie5 DNA MER1_type 2542 2593 -19 1619 186 0 17 chr9 38215008 38215303 -79647324 - AluJo SINE Alu -22 290 1 323 327 88 26 chr9 38215476 38215782 -79646845 + L2 LINE L2 2829 3153 -160 24 0 0 0 chr9 38215790 38215814 -79646813 + AT_rich Low_complexity Low_complexity 1 24 0 204 40 0 0 chr9 38215916 38215941 -79646686 + (CA)n Simple_repeat Simple_repeat 2 26 0 2115 130 0 13 chr9 38215944 38216245 -79646382 - AluJb SINE Alu -15 297 1 21 82 0 0 chr9 38217861 38217910 -79644717 + AT_rich Low_complexity Low_complexity 1 49 0 3765 119 36 59 chr9 38218348 38219038 -79643589 + L1MC1 LINE L1 5660 6333 0 237 281 0 16 chr9 38220325 38220389 -79642238 + MER5A DNA MER1_type 79 141 -48 2091 134 0 49 chr9 38220396 38220724 -79641903 - AluSx SINE Alu 0 312 1 1345 174 29 54 chr9 38220862 38220979 -79641648 + AluJo SINE Alu 5 123 -189 270 0 0 0 chr9 38220979 38221009 -79641618 + (TA)n Simple_repeat Simple_repeat 2 31 0 1345 174 29 54 chr9 38221009 38221024 -79641603 + AluJo SINE Alu 123 137 -175 770 0 11 0 chr9 38221024 38221114 -79641513 + (TCTA)n Simple_repeat Simple_repeat 3 93 0 1345 174 29 54 chr9 38221114 38221296 -79641331 + AluJo SINE Alu 137 312 0 2201 197 32 43 chr9 38221818 38221862 -79640765 - L1ME1 LINE L1 -5 6161 6118 2227 72 21 3 chr9 38221862 38222152 -79640475 + AluY SINE Alu 1 295 -16 2201 197 32 43 chr9 38222152 38222636 -79639991 - L1ME1 LINE L1 -48 6118 5639 1176 249 58 23 chr9 38222639 38223037 -79639590 - MER74B LTR ERVL 0 622 211 318 170 0 0 chr9 38223072 38223125 -79639502 - MER74B LTR ERVL -569 53 1 1860 209 35 29 chr9 38223126 38223855 -79638772 - L1ME1 LINE L1 -523 5643 4911 1826 159 10 14 chr9 38224597 38224887 -79637740 - AluJb SINE Alu -23 289 1 463 250 47 35 chr9 38225118 38225290 -79637337 + L1MEd LINE L1 59 232 -5887 436 257 0 20 chr9 38225418 38225519 -79637108 + MER5A DNA MER1_type 4 102 -87 328 282 0 27 chr9 38225854 38225964 -79636663 - MIR SINE MIR -58 150 44 2134 125 72 83 chr9 38226133 38226566 -79636061 + MSTA LTR MaLR 1 428 0 210 297 45 27 chr9 38227021 38227132 -79635495 + MIR3 SINE MIR 88 200 -8 253 341 78 8 chr9 38228077 38228206 -79634421 - L2 LINE L2 -10 3262 3125 950 191 0 34 chr9 38228291 38228469 -79634158 + AluJ SINE Alu 1 172 -140 317 175 0 198 chr9 38228484 38228701 -79633926 + LTR38B LTR ERV1 10 183 -427 2318 85 13 3 chr9 38229028 38229333 -79633294 + AluY SINE Alu 1 308 -3 225 0 0 0 chr9 38229333 38229358 -79633269 + (CCA)n Simple_repeat Simple_repeat 1 25 0 790 166 0 14 chr9 38229523 38229662 -79632965 + AluJ SINE Alu 167 303 -9 203 276 61 20 chr9 38230358 38230456 -79632171 - L3 LINE CR1 -23 1554 1453 2284 128 12 0 chr9 38230456 38230791 -79631836 - MER47A DNA MER2_type 0 366 28 1592 151 34 34 chr9 38230936 38231227 -79631400 - AluJo SINE Alu -20 292 2 2181 123 0 3 chr9 38231237 38231539 -79631088 - AluSx SINE Alu -11 301 1 1223 346 67 43 chr9 38232078 38233038 -79629589 + ERVL LTR ERVL 1231 2213 -3551 1339 183 119 58 chr9 38233412 38233756 -79628871 + MLT1A1 LTR MaLR 1 365 0 2379 118 120 5 chr9 38234424 38234807 -79627820 - MSTA LTR MaLR 0 428 2 251 300 22 0 chr9 38236239 38236329 -79626298 + L1ME LINE L1 4 95 -5975 2898 157 6 2 chr9 38237197 38237680 -79624947 + MER31A LTR ERV1 1 485 0 324 222 0 0 chr9 38237953 38238016 -79624611 - L2 LINE L2 -10 3303 3241 189 0 0 0 chr9 38238059 38238080 -79624547 + (CAT)n Simple_repeat Simple_repeat 3 23 0 518 289 148 19 chr9 38238109 38238379 -79624248 - L3 LINE CR1 -27 1550 1246 1255 204 19 0 chr9 38238992 38239257 -79623370 + L1MA4 LINE L1 6022 6291 -9 23 0 0 0 chr9 38239296 38239319 -79623308 + AT_rich Low_complexity Low_complexity 1 23 0 183 271 0 0 chr9 38239741 38239800 -79622827 + CT-rich Low_complexity Low_complexity 4 62 0 231 341 94 13 chr9 38239857 38240156 -79622471 - L3 LINE CR1 -652 925 603 206 314 212 7 chr9 38240151 38240288 -79622339 - L2 LINE L2 0 3272 3108 * 2800 99 90 11 chr9 38240345 38240557 -79622070 - Tigger2 DNA MER2_type 0 2718 2524 1692 169 7 10 chr9 38240557 38240832 -79621795 + AluSx SINE Alu 2 276 -36 360 0 0 0 chr9 38240832 38240872 -79621755 + (TC)n Simple_repeat Simple_repeat 1 40 0 216 0 0 0 chr9 38240871 38240895 -79621732 + (CA)n Simple_repeat Simple_repeat 1 24 0 * 1692 169 7 10 chr9 38240872 38240914 -79621713 + AluSx SINE Alu 276 295 -17 2800 99 90 11 chr9 38240914 38241145 -79621482 - Tigger2 DNA MER2_type -194 2524 2240 263 353 42 32 chr9 38242445 38242635 -79619992 + L3 LINE CR1 1259 1450 -127 1539 226 95 15 chr9 38242707 38243170 -79619457 - MLT1E LTR MaLR -2 591 1 322 354 43 6 chr9 38244413 38244574 -79618053 + L3 LINE CR1 1367 1533 -44 360 0 0 0 chr9 38247395 38247435 -79615192 + (TG)n Simple_repeat Simple_repeat 2 41 0 2741 101 36 10 chr9 38247446 38247860 -79614767 - L1MA3 LINE L1 0 6305 5881 719 170 91 140 chr9 38247860 38248166 -79614461 - L1MC5 LINE L1 -135 7826 7555 2866 80 0 29 chr9 38248166 38248552 -79614075 + THE1C LTR MaLR 1 375 0 719 170 91 140 chr9 38248552 38248775 -79613852 - L1MC5 LINE L1 -406 7555 7323 874 225 52 19 chr9 38248805 38249101 -79613526 - L1MC5 LINE L1 -1090 6871 6625 287 123 82 0 chr9 38249864 38249986 -79612641 + (TA)n Simple_repeat Simple_repeat 2 133 0 340 80 80 0 chr9 38250094 38250194 -79612433 + (TA)n Simple_repeat Simple_repeat 1 108 0 21 0 0 0 chr9 38250270 38250291 -79612336 + AT_rich Low_complexity Low_complexity 1 21 0 366 310 29 23 chr9 38250345 38250516 -79612111 - L2 LINE L2 0 3313 3142 1108 259 112 40 chr9 38250548 38250758 -79611869 + HAL1 LINE L1 23 217 -2290 1791 190 87 11 chr9 38250758 38251126 -79611501 - MSTD LTR MaLR 0 396 1 1108 259 112 40 chr9 38251126 38251389 -79611238 + HAL1 LINE L1 217 530 -1977 1020 220 111 85 chr9 38251389 38251518 -79611109 + HAL1 LINE L1 1446 1570 -937 1264 214 128 21 chr9 38251518 38251853 -79610774 + MLT2D LTR ERVL 1 381 -33 354 45 0 0 chr9 38251853 38251897 -79610730 + (CA)n Simple_repeat Simple_repeat 2 45 0 1264 214 128 21 chr9 38251897 38251935 -79610692 + MLT2D LTR ERVL 381 414 0 1020 220 111 85 chr9 38251935 38252047 -79610580 + HAL1 LINE L1 1570 1678 -829 2096 119 7 7 chr9 38252047 38252332 -79610295 + AluSx SINE Alu 13 297 -15 1020 220 111 85 chr9 38252332 38252512 -79610115 + HAL1 LINE L1 1678 1879 -628 3150 158 48 79 chr9 38252966 38253154 -79609473 + L1PB4 LINE L1 5455 5647 -509 1520 119 0 0 chr9 38253154 38253356 -79609271 - AluSq SINE Alu -13 300 99 3150 158 48 79 chr9 38253356 38253878 -79608749 + L1PB4 LINE L1 5647 6143 -13 1221 217 49 48 chr9 38253988 38254468 -79608159 - MLT1E3 LTR MaLR 0 626 77 317 284 24 71 chr9 38254537 38254748 -79607879 + L1ME3 LINE L1 5961 6161 -1 1772 177 7 0 chr9 38256386 38256669 -79605958 + AluJo SINE Alu 1 285 -27 24 0 0 0 chr9 38256669 38256693 -79605934 + AT_rich Low_complexity Low_complexity 1 24 0 401 267 57 126 chr9 38259160 38259233 -79603394 + HAL1 LINE L1 844 920 -1587 2029 91 0 15 chr9 38259233 38259507 -79603120 + AluSx SINE Alu 28 297 -15 401 267 57 126 chr9 38259507 38259763 -79602864 + HAL1 LINE L1 920 1128 -1379 535 45 0 0 chr9 38259763 38259829 -79602798 - L1PA11 LINE L1 -5 6169 6104 401 267 57 126 chr9 38259829 38260008 -79602619 + HAL1 LINE L1 1128 1318 -1189 3348 110 8 6 chr9 38260017 38260491 -79602136 + L1PB1 LINE L1 5677 6151 0 319 312 48 30 chr9 38260621 38260908 -79601719 + HAL1b LINE L1 366 656 -692 349 374 0 24 chr9 38261137 38261260 -79601367 + L2 LINE L2 3153 3272 0 937 212 82 108 chr9 38261430 38261625 -79601002 - L1MC5 LINE L1 -33 7928 7729 1914 100 93 0 chr9 38261625 38261894 -79600733 - AluSg SINE Alu -15 295 2 937 212 82 108 chr9 38261894 38261948 -79600679 - L1MC5 LINE L1 -232 7729 7675 1880 162 0 3 chr9 38261948 38262244 -79600383 - AluJo SINE Alu -1 311 17 937 212 82 108 chr9 38262244 38262343 -79600284 - L1MC5 LINE L1 -286 7675 7575 2225 92 3 3 chr9 38262343 38262636 -79599991 - AluSx SINE Alu -19 293 1 2427 83 6 6 chr9 38262645 38262957 -79599670 - AluSp SINE Alu -1 312 1 937 212 82 108 chr9 38262957 38263224 -79599403 - L1MC5 LINE L1 -394 7567 7316 2342 111 0 0 chr9 38263224 38263531 -79599096 - AluSx SINE Alu 0 312 6 937 212 82 108 chr9 38263531 38263552 -79599075 - L1MC5 LINE L1 -645 7316 7296 1151 259 106 101 chr9 38263572 38264314 -79598313 - L1MC4a LINE L1 -945 6863 6113 1553 209 0 38 chr9 38264314 38264630 -79597997 + AluJb SINE Alu 1 304 -8 1151 259 106 101 chr9 38264630 38264917 -79597710 - L1MC4a LINE L1 -1695 6113 5829 209 352 172 0 chr9 38265091 38265236 -79597391 + MIR3 SINE MIR 32 201 -7 543 293 44 105 chr9 38265713 38266075 -79596552 + L2 LINE L2 2932 3271 -1 1118 248 20 106 chr9 38266081 38266589 -79596038 + L1ME3A LINE L1 5622 6085 -85 2149 111 23 13 chr9 38266624 38266930 -79595697 - AluSc SINE Alu 0 309 1 252 265 26 68 chr9 38268538 38268655 -79593972 + L3 LINE CR1 1353 1464 -113 1897 160 3 0 chr9 38269334 38269658 -79592969 + AluJo SINE Alu 1 312 0 4158 233 67 55 chr9 38269658 38271025 -79591602 + L1MD2 LINE L1 1098 2481 -4059 1614 206 82 3 chr9 38271026 38271356 -79591271 - MLT1A1 LTR MaLR 0 365 10 821 176 27 0 chr9 38271364 38271571 -79591056 + L1MD2 LINE L1 2479 2650 -3890 560 198 86 37 chr9 38271559 38271746 -79590881 + L1MD2 LINE L1 4270 4465 -2075 * 2026 243 20 40 chr9 38271741 38272349 -79590278 + L1MD2 LINE L1 4794 5389 -1151 1854 293 63 60 chr9 38272386 38273349 -79589278 + L1M2b LINE L1 14 979 -6230 9407 193 21 9 chr9 38273386 38276800 -79585827 + L1M2b LINE L1 1701 5155 -2053 804 199 31 5 chr9 38276802 38276993 -79585634 + L1M2b LINE L1 5326 5521 -1687 6060 156 24 30 chr9 38278547 38279261 -79583366 + L1MA5 LINE L1 4096 4812 -1488 2093 122 0 7 chr9 38279261 38279556 -79583071 + AluSx SINE Alu 1 293 -19 2355 106 0 0 chr9 38279564 38279867 -79582760 + AluSc SINE Alu 1 303 -6 6060 156 24 30 chr9 38279867 38280368 -79582259 + L1MA5 LINE L1 4819 5321 -979 2672 155 25 23 chr9 38280368 38280800 -79581827 + Tigger2a DNA MER2_type 1 433 -1 6060 156 24 30 chr9 38280800 38281750 -79580877 + L1MA5 LINE L1 5321 6261 -39 3854 214 29 28 chr9 38281743 38282808 -79579819 + L1MD2 LINE L1 5357 6541 -212 * 436 241 18 59 chr9 38282807 38282977 -79579650 + L1MD3 LINE L1 7832 7994 -1 * 1021 268 43 132 chr9 38282944 38283733 -79578894 + L1ME3A LINE L1 3891 4558 -1588 2198 103 0 0 chr9 38283733 38284051 -79578576 - AluSx SINE Alu 0 318 1 1021 268 43 132 chr9 38284051 38284365 -79578262 + L1ME3A LINE L1 4558 4898 -1248 866 221 98 14 chr9 38284394 38284670 -79577957 + L1ME3A LINE L1 5664 5962 -208 241 279 52 78 chr9 38284690 38284844 -79577783 + L1ME3A LINE L1 5925 6074 -96 481 264 181 0 chr9 38284964 38285119 -79577508 + L1MC4a LINE L1 5428 5610 -2198 320 184 68 48 chr9 38285121 38285224 -79577403 + L1MC4a LINE L1 5650 5754 -2054 2208 105 3 7 chr9 38285224 38285529 -79577098 + AluSx SINE Alu 1 304 -8 844 178 59 0 chr9 38285529 38285681 -79576946 + AluSg/x SINE Alu 132 292 -18 358 250 36 89 chr9 38285683 38285851 -79576776 + L1MC4a LINE L1 5747 5905 -1903 280 252 74 104 chr9 38286091 38286317 -79576310 + MIR SINE MIR 35 250 -12 186 43 0 0 chr9 38286324 38286347 -79576280 + (CTG)n Simple_repeat Simple_repeat 1 23 0 203 182 45 0 chr9 38287022 38287066 -79575561 + G-rich Low_complexity Low_complexity 4 49 0 2217 111 13 10 chr9 38287571 38287878 -79574749 - AluSx SINE Alu -4 308 1 396 355 60 6 chr9 38287912 38288261 -79574366 - L1ME4a LINE L1 -199 5922 5555 300 27 0 0 chr9 38288605 38288642 -79573985 + (CA)n Simple_repeat Simple_repeat 1 37 0 302 287 32 0 chr9 38288730 38288824 -79573803 - MIR3 SINE MIR -21 187 91 988 209 11 0 chr9 38289466 38289653 -79572974 + MER20 DNA MER1_type 31 219 0 253 331 144 0 chr9 38289949 38290088 -79572539 + MIR SINE MIR 28 186 -76 330 307 10 0 chr9 38291005 38291106 -79571521 + MIR SINE MIR 49 150 -58 2152 133 0 0 chr9 38293071 38293371 -79569256 - AluSx SINE Alu -8 304 5 431 187 33 0 chr9 38293393 38293484 -79569143 + MER103 DNA DNA 50 143 -23 2065 94 6 82 chr9 38293522 38293852 -79568775 - AluSx SINE Alu -7 305 1 463 181 0 0 chr9 38294118 38294190 -79568437 + FLAM SINE Alu 58 129 -14 469 292 95 60 chr9 38294423 38294738 -79567889 - L3 LINE CR1 -71 1506 1181 330 290 84 52 chr9 38295439 38295749 -79566878 + L1M4 LINE L1 3370 3689 -2457 22 0 0 0 chr9 38296044 38296066 -79566561 + AT_rich Low_complexity Low_complexity 1 22 0 357 276 20 10 chr9 38296356 38296454 -79566173 + GA-rich Low_complexity Low_complexity 2 100 0 445 236 7 7 chr9 38296474 38296618 -79566009 + GA-rich Low_complexity Low_complexity 1 144 0 3186 122 32 2 chr9 38297139 38297606 -79565021 + LTR39 LTR ERV1 1 481 -302 2122 107 0 14 chr9 38297606 38297897 -79564730 + AluSx SINE Alu 1 287 -25 8161 28 0 1 chr9 38297905 38298839 -79563788 + L1PA3 LINE L1 5222 6154 -1 37 81 0 0 chr9 38298839 38298925 -79563702 + AT_rich Low_complexity Low_complexity 1 86 0 401 140 73 207 chr9 38298932 38299082 -79563545 + LTR39 LTR ERV1 460 589 -194 2330 110 0 0 chr9 38299087 38299388 -79563239 - AluSq SINE Alu -12 301 1 1574 232 114 24 chr9 38300574 38300999 -79561628 + L1MC4 LINE L1 7449 7935 -107 351 0 0 0 chr9 38300999 38301038 -79561589 + (CA)n Simple_repeat Simple_repeat 2 40 0 1574 232 114 24 chr9 38301038 38301155 -79561472 + L1MC4 LINE L1 7935 8040 -2 732 197 0 38 chr9 38301434 38301566 -79561061 + AluJo/FLAM SINE Alu 1 127 -175 1836 173 3 3 chr9 38301576 38301876 -79560751 + AluJb SINE Alu 1 300 -12 1002 175 0 27 chr9 38301876 38302048 -79560579 - AluJb SINE Alu -11 301 133 287 318 46 31 chr9 38302048 38302138 -79560489 + L1ME LINE L1 5602 5689 -432 2507 70 0 6 chr9 38302138 38302451 -79560176 + AluY SINE Alu 1 311 0 287 318 46 31 chr9 38302451 38302555 -79560072 + L1ME LINE L1 5689 5799 -322 23 33 0 0 chr9 38302721 38302751 -79559876 + AT_rich Low_complexity Low_complexity 1 30 0 1888 152 44 0 chr9 38302767 38303064 -79559563 + AluSx SINE Alu 1 310 -2 423 246 49 1 chr9 38303250 38303393 -79559234 + L1M4 LINE L1 4718 4870 -1276 292 246 65 145 chr9 38303394 38303642 -79558985 + LTR50 LTR ERVL 1 228 -567 27 0 0 0 chr9 38303774 38303801 -79558826 + AT_rich Low_complexity Low_complexity 1 27 0 207 0 0 0 chr9 38304482 38304505 -79558122 + (A)n Simple_repeat Simple_repeat 1 23 0 1120 97 0 13 chr9 38307127 38307281 -79555346 + AluSp SINE Alu 150 301 -12 1107 269 13 82 chr9 38308209 38308670 -79553957 - MLT1J LTR MaLR 0 511 83 739 133 148 7 chr9 38308671 38308806 -79553821 - MLT1A2 LTR MaLR -2 372 219 2016 113 3 0 chr9 38309624 38309937 -79552690 - AluSp SINE Alu 0 314 1 2064 69 0 4 chr9 38311363 38311624 -79551003 - AluY SINE Alu -17 294 35 870 254 83 53 chr9 38311695 38312092 -79550535 - MLT1J LTR MaLR -102 409 1 2546 148 29 12 chr9 38312245 38312664 -79549963 - MSTB LTR MaLR 0 426 1 26 50 0 0 chr9 38313744 38313784 -79548843 + AT_rich Low_complexity Low_complexity 1 40 0 1776 143 75 13 chr9 38313932 38314240 -79548387 - MER7A DNA MER2_type -1 345 21 37 0 0 0 chr9 38314456 38314493 -79548134 + AT_rich Low_complexity Low_complexity 1 37 0 2037 126 3 3 chr9 38314496 38314806 -79547821 - AluSx SINE Alu -2 310 1 785 146 26 57 chr9 38314826 38314892 -79547735 + MER53 DNA DNA 4 71 -118 2170 100 0 0 chr9 38314892 38315182 -79547445 - AluSg SINE Alu -20 290 1 785 146 26 57 chr9 38315182 38315307 -79547320 + MER53 DNA DNA 71 189 0 693 238 96 43 chr9 38315965 38316268 -79546359 + L1MC5 LINE L1 7610 7928 -33 2585 128 5 14 chr9 38316285 38316699 -79545928 + L1MB3 LINE L1 5773 6182 -1 303 43 0 0 chr9 38316903 38316949 -79545678 - L1PA4 LINE L1 0 6155 6110 1534 174 3 57 chr9 38316967 38317283 -79545344 - AluJo SINE Alu -9 303 5 221 350 40 20 chr9 38318376 38318476 -79544151 + MIR SINE MIR 8 109 -153 729 233 24 111 chr9 38318476 38318926 -79543701 - L1MC5 LINE L1 -39 7922 7512 704 257 137 26 chr9 38320310 38320604 -79542023 - L1ME4a LINE L1 -1 6120 5755 1966 125 3 3 chr9 38320604 38320907 -79541720 - AluSx SINE Alu -9 303 1 704 257 137 26 chr9 38320907 38321071 -79541556 - L1ME4a LINE L1 -366 5755 5611 944 254 203 47 chr9 38321419 38321714 -79540913 + L2 LINE L2 2248 2496 -817 2273 73 0 3 chr9 38321714 38322001 -79540626 + AluSp SINE Alu 1 286 -27 944 254 203 47 chr9 38322001 38322605 -79540022 + L2 LINE L2 2496 3313 0 2240 90 3 3 chr9 38322831 38323132 -79539495 + AluSc SINE Alu 1 301 -8 1937 129 17 7 chr9 38323816 38324118 -79538509 - AluJo SINE Alu -7 305 1 422 303 157 46 chr9 38324203 38324464 -79538163 - L3 LINE CR1 -108 1469 1180 1787 161 0 3 chr9 38324547 38324845 -79537782 + AluJb SINE Alu 1 297 -15 1447 146 28 7 chr9 38325138 38325549 -79537078 - LTR54 LTR ERV1 -5 505 1 1140 234 70 35 chr9 38325576 38325892 -79536735 - MLT1J LTR MaLR -13 498 172 2216 91 0 3 chr9 38326224 38326522 -79536105 - AluSc SINE Alu -12 297 1 2639 180 68 37 chr9 38326528 38326845 -79535782 - MER99 DNA DNA -2 826 520 639 195 132 37 chr9 38326845 38327035 -79535592 - MER63A DNA MER1_type -2 208 1 2639 180 68 37 chr9 38327035 38327333 -79535294 - MER99 DNA DNA -308 520 192 21 36 0 0 chr9 38327692 38327720 -79534907 + AT_rich Low_complexity Low_complexity 1 28 0 1610 128 9 128 chr9 38328013 38328348 -79534279 + AluJo SINE Alu 2 296 -6 362 316 0 0 chr9 38328350 38328448 -79534179 - MER99 DNA DNA -729 99 2 232 289 19 103 chr9 38328571 38328725 -79533902 + MIR SINE MIR 52 192 -62 317 221 91 0 chr9 38329503 38329580 -79533047 + LTR54 LTR ERV1 16 99 -411 525 169 87 182 chr9 38329717 38329948 -79532679 + MER57A LTR ERV1 195 403 0 180 0 0 0 chr9 38330175 38330195 -79532432 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 456 279 52 15 chr9 38330200 38330434 -79532193 - L1ME4a LINE L1 -296 5825 5643 1643 184 91 78 chr9 38330725 38330851 -79531776 - MLT1D LTR MaLR -15 490 367 1831 67 115 7 chr9 38330851 38331120 -79531507 + AluSc SINE Alu 1 298 -11 1643 184 91 78 chr9 38331120 38331477 -79531150 - MLT1D LTR MaLR -138 367 1 216 67 0 0 chr9 38332181 38332211 -79530416 + (TG)n Simple_repeat Simple_repeat 2 31 0 332 332 15 45 chr9 38332353 38332433 -79530194 - L1ME4a LINE L1 -3 6118 6037 2178 112 3 0 chr9 38332433 38332745 -79529882 + AluSq SINE Alu 1 313 0 332 332 15 45 chr9 38332745 38332863 -79529764 - L1ME4a LINE L1 -84 6037 5926 273 352 16 0 chr9 38332916 38333044 -79529583 - L1ME4a LINE L1 -1976 5832 5703 2072 122 0 0 chr9 38333814 38334118 -79528509 + AluSx SINE Alu 1 304 -8 229 272 138 0 chr9 38334315 38334428 -79528199 + MIR SINE MIR 116 250 -12 1916 83 61 4 chr9 38334428 38334706 -79527921 + AluY SINE Alu 1 294 -17 271 122 17 52 chr9 38335028 38335143 -79527484 + (CA)n Simple_repeat Simple_repeat 2 112 0 428 121 27 44 chr9 38335158 38335460 -79527167 + (CA)n Simple_repeat Simple_repeat 1 296 0 454 113 16 59 chr9 38335474 38335660 -79526967 + (CA)n Simple_repeat Simple_repeat 2 179 0 364 128 16 59 chr9 38335674 38335861 -79526766 + (CA)n Simple_repeat Simple_repeat 2 180 0 398 129 24 49 chr9 38335876 38336182 -79526445 + (CA)n Simple_repeat Simple_repeat 1 298 0 233 234 0 0 chr9 38336278 38336325 -79526302 + (TGAA)n Simple_repeat Simple_repeat 1 47 0 192 152 0 0 chr9 38336347 38336380 -79526247 + (TGGA)n Simple_repeat Simple_repeat 3 35 0 1381 205 3 24 chr9 38336827 38337162 -79525465 + AluJo SINE Alu 1 329 0 379 306 104 0 chr9 38337273 38337407 -79525220 + LTR16A LTR ERVL 301 448 -2 227 304 87 0 chr9 38340328 38340420 -79522207 - MIR SINE MIR -70 192 93 375 152 0 0 chr9 38342823 38342902 -79519725 + (TGG)n Simple_repeat Simple_repeat 3 81 0 189 0 0 0 chr9 38343078 38343099 -79519528 + (CAG)n Simple_repeat Simple_repeat 1 21 0 630 209 181 6 chr9 38343508 38343685 -79518942 + MIR SINE MIR 1 208 -54 306 304 32 16 chr9 38344933 38345058 -79517569 - MIR3 SINE MIR -1 207 81 986 47 78 0 chr9 38345382 38345510 -79517117 + MER85 DNA T2_type 1 138 -1 1802 163 20 3 chr9 38345524 38345825 -79516802 + AluJb SINE Alu 1 306 -6 273 265 128 10 chr9 38347311 38347507 -79515120 + HAL1 LINE L1 1143 1361 -1146 360 64 0 0 chr9 38347509 38347556 -79515071 + (TCTA)n Simple_repeat Simple_repeat 1 47 0 1675 143 7 24 chr9 38347556 38347843 -79514784 - AluJb SINE Alu -30 282 1 4330 118 48 41 chr9 38347921 38348698 -79513929 + L1MC1 LINE L1 5552 6333 0 415 302 108 3 chr9 38348797 38348874 -79513753 + L1M4 LINE L1 3628 3696 -2450 2310 70 0 7 chr9 38348874 38349174 -79513453 - AluSc SINE Alu -11 298 1 415 302 108 3 chr9 38349174 38349391 -79513236 + L1M4 LINE L1 3696 3953 -2193 10168 101 34 31 chr9 38349393 38349466 -79513161 + Tigger1 DNA MER2_type 1 72 -2346 2007 128 0 16 chr9 38349466 38349772 -79512855 + AluSx SINE Alu 1 301 -11 10168 101 34 31 chr9 38349772 38351248 -79511379 + Tigger1 DNA MER2_type 72 1555 -863 2226 153 59 25 chr9 38351225 38351438 -79511189 + Tigger1 DNA MER2_type 2014 2247 -171 * 2049 106 0 33 chr9 38351438 38351739 -79510888 - AluSg SINE Alu -19 291 1 2226 153 59 25 chr9 38351739 38351917 -79510710 + Tigger1 DNA MER2_type 2247 2418 0 324 248 79 134 chr9 38351952 38352154 -79510473 + L1M4 LINE L1 3974 4164 -1982 33 43 0 0 chr9 38352226 38352273 -79510354 + AT_rich Low_complexity Low_complexity 1 47 0 766 164 0 0 chr9 38352275 38352391 -79510236 + AluSq/x SINE Alu 3 118 -195 315 0 0 0 chr9 38352391 38352426 -79510201 + (TAA)n Simple_repeat Simple_repeat 2 36 0 354 358 28 51 chr9 38352430 38352684 -79509943 + L1M4 LINE L1 4289 4536 -1610 1319 138 15 0 chr9 38352817 38353020 -79509607 - AluJo SINE Alu -23 289 84 2010 120 0 3 chr9 38353948 38354247 -79508380 + AluSx SINE Alu 1 298 -14 237 301 171 8 chr9 38354549 38354672 -79507955 - L2 LINE L2 0 3313 3171 286 220 208 87 chr9 38354801 38354889 -79507738 - MIR SINE MIR -53 209 133 1798 123 51 3 chr9 38354889 38355181 -79507446 + AluSx SINE Alu 2 307 -5 286 220 208 87 chr9 38355181 38355265 -79507362 - MIR SINE MIR -129 133 16 1335 176 66 7 chr9 38355835 38356136 -79506491 + MER33 DNA MER1_type 3 321 -3 371 312 80 11 chr9 38356305 38356493 -79506134 + MER20B DNA MER1_type 16 217 -2 1937 109 3 14 chr9 38356584 38356877 -79505750 - AluSx SINE Alu -12 300 11 330 317 50 50 chr9 38357403 38357602 -79505025 - L2 LINE L2 -685 2629 2431 309 283 49 60 chr9 38357623 38357807 -79504820 - L2 LINE L2 -1524 1790 1609 1688 139 77 0 chr9 38357955 38358112 -79504515 - AluJb SINE Alu -18 294 150 441 0 0 0 chr9 38358112 38358161 -79504466 + (TG)n Simple_repeat Simple_repeat 2 50 0 1688 139 77 0 chr9 38358161 38358276 -79504351 - AluJb SINE Alu -162 150 1 1521 172 12 75 chr9 38358381 38358713 -79503914 + AluJb SINE Alu 1 311 -1 428 260 135 82 chr9 38358713 38359658 -79502969 + L1M4 LINE L1 2271 3266 -2880 209 159 0 45 chr9 38359644 38359660 -79502967 + A-rich Low_complexity Low_complexity 4 19 -26 * 1672 187 0 44 chr9 38359660 38359981 -79502646 + AluJo SINE Alu 3 309 -3 209 159 0 45 chr9 38359981 38360008 -79502619 + A-rich Low_complexity Low_complexity 19 45 0 1446 210 46 52 chr9 38360066 38360190 -79502437 + L1MB8 LINE L1 3090 3213 -2933 1941 140 62 0 chr9 38360190 38360482 -79502145 - AluSx SINE Alu -2 310 1 1446 210 46 52 chr9 38360482 38360882 -79501745 + L1MB8 LINE L1 3213 3610 -2536 5075 164 27 32 chr9 38360883 38361171 -79501456 + L1MB8 LINE L1 4866 5154 -1024 2491 68 0 0 chr9 38361171 38361482 -79501145 + AluY SINE Alu 1 311 0 5075 164 27 32 chr9 38361482 38361529 -79501098 + L1MB8 LINE L1 5154 5200 -978 2061 102 51 24 chr9 38361529 38361822 -79500805 + AluSg SINE Alu 1 301 -9 5075 164 27 32 chr9 38361822 38362745 -79499882 + L1MB8 LINE L1 5200 6116 -62 1857 127 33 4 chr9 38362745 38363052 -79499575 - AluSx SINE Alu 0 315 1 5075 164 27 32 chr9 38363052 38363115 -79499512 + L1MB8 LINE L1 6116 6178 0 275 304 81 25 chr9 38363131 38363292 -79499335 + L1M4 LINE L1 3369 3538 -2608 912 284 25 9 chr9 38363321 38363645 -79498982 + L1M4 LINE L1 3633 3961 -2185 324 0 0 0 chr9 38363713 38363749 -79498878 + (TG)n Simple_repeat Simple_repeat 1 36 0 21 57 0 0 chr9 38363873 38363908 -79498719 + AT_rich Low_complexity Low_complexity 1 35 0 1625 254 71 52 chr9 38363916 38364009 -79498618 + L1M4 LINE L1 3951 4041 -2105 1628 175 10 41 chr9 38364009 38364351 -79498276 + AluJb SINE Alu 1 333 0 1625 254 71 52 chr9 38364351 38364389 -79498238 + L1M4 LINE L1 4041 4077 -2069 2000 104 19 0 chr9 38364389 38364659 -79497968 + AluSx SINE Alu 22 296 -16 1625 254 71 52 chr9 38364659 38365383 -79497244 + L1M4 LINE L1 4077 4824 -1322 357 82 0 0 chr9 38365572 38365621 -79497006 + (TA)n Simple_repeat Simple_repeat 2 50 0 290 266 47 64 chr9 38365718 38365951 -79496676 - HAL1 LINE L1 -1457 1050 822 980 155 25 10 chr9 38366391 38366591 -79496036 + L1 LINE L1 4406 4608 -1538 236 257 7 79 chr9 38367062 38367214 -79495413 + L1ME LINE L1 3759 3899 -2247 855 273 76 65 chr9 38367223 38368148 -79494479 + L1ME LINE L1 4490 5440 -681 1460 212 3 7 chr9 38368148 38368431 -79494196 + AluJo SINE Alu 1 282 -30 855 273 76 65 chr9 38368431 38368801 -79493826 + L1ME LINE L1 5440 5804 -317 2108 101 14 0 chr9 38368841 38369117 -79493510 + AluSq SINE Alu 1 280 -33 267 54 0 0 chr9 38369117 38369154 -79493473 + (TC)n Simple_repeat Simple_repeat 2 38 0 240 35 0 0 chr9 38369169 38369198 -79493429 + (TG)n Simple_repeat Simple_repeat 2 30 0 307 287 35 0 chr9 38369198 38369285 -79493342 + L1MC4 LINE L1 6614 6703 -1339 216 189 0 0 chr9 38369285 38369322 -79493305 + (CATATA)n Simple_repeat Simple_repeat 2 38 0 1178 168 15 113 chr9 38369352 38369734 -79492893 + L1MD3 LINE L1 983 8046 -18 1591 260 123 52 chr9 38369748 38370913 -79491714 + L1MEc LINE L1 1064 2310 -4086 2319 90 0 7 chr9 38370925 38371226 -79491401 + AluSc SINE Alu 1 299 -10 1527 227 20 0 chr9 38371240 38371583 -79491044 + L1MEc LINE L1 2402 2751 -3464 * 3051 187 42 21 chr9 38371569 38372228 -79490399 + L1M4b LINE L1 885 1557 -5302 * 3159 201 52 16 chr9 38372227 38373257 -79489370 + L1M3 LINE L1 4573 5641 -542 2599 242 68 9 chr9 38373271 38374048 -79488579 + L1M4b LINE L1 1540 2362 -4597 744 199 7 7 chr9 38374229 38374365 -79488262 + AluJo SINE Alu 2 137 -175 2346 77 7 0 chr9 38374365 38374663 -79487964 + AluSg SINE Alu 1 300 -10 2414 62 0 3 chr9 38374817 38375109 -79487518 + AluY SINE Alu 1 291 -20 1065 127 0 24 chr9 38375109 38375275 -79487352 + AluSg/x SINE Alu 135 296 -14 1052 140 150 10 chr9 38375275 38375482 -79487145 + MSTB LTR MaLR 191 426 0 642 176 59 0 chr9 38375482 38375618 -79487009 + L1MB7 LINE L1 5866 6009 -175 * 5783 136 94 26 chr9 38375616 38376448 -79486179 - L1PBa LINE L1 -1624 5238 4464 2334 69 7 3 chr9 38376448 38376738 -79485889 + AluSp SINE Alu 14 304 -9 5783 136 94 26 chr9 38376738 38377509 -79485118 - L1PBa LINE L1 -2398 4464 1622 1341 105 0 0 chr9 38377610 38377781 -79484846 - AluSx SINE Alu -141 171 1 290 115 0 0 chr9 38377781 38377833 -79484794 - AluSq SINE Alu 0 301 250 1454 109 5 15 chr9 38377833 38378035 -79484592 - AluSq SINE Alu -113 200 1 324 0 0 0 chr9 38378048 38378084 -79484543 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 291 298 0 12 chr9 38378452 38378536 -79484091 - MIR SINE MIR -57 151 69 2213 89 7 0 chr9 38378861 38379143 -79483484 - AluSp SINE Alu -29 284 1 2289 106 0 13 chr9 38379146 38379449 -79483178 - AluSg SINE Alu -9 301 3 2335 88 3 25 chr9 38380000 38380319 -79482308 - AluSx SINE Alu 0 312 1 2817 13 0 0 chr9 38381092 38381399 -79481228 + AluYb8 SINE Alu 1 307 -11 3612 163 45 58 chr9 38381404 38381717 -79480910 + L1MB7 LINE L1 5391 5707 -477 2059 141 3 0 chr9 38381717 38382021 -79480606 + AluSx SINE Alu 2 306 -6 3612 163 45 58 chr9 38382021 38382512 -79480115 + L1MB7 LINE L1 5707 6184 0 1947 100 60 0 chr9 38382596 38382865 -79479762 - AluY SINE Alu -26 285 1 775 112 48 48 chr9 38384396 38384521 -79478106 + FLAM_C SINE Alu 2 126 -17 2338 86 10 0 chr9 38384532 38384836 -79477791 + AluSp SINE Alu 1 307 -6 2155 116 0 10 chr9 38384838 38385139 -79477488 + AluSg SINE Alu 1 298 -12 2150 68 31 34 chr9 38385665 38385957 -79476670 - AluY SINE Alu -20 291 1 25 31 0 0 chr9 38386014 38386046 -79476581 + AT_rich Low_complexity Low_complexity 1 32 0 804 182 8 0 chr9 38386368 38386500 -79476127 - AluSc SINE Alu -176 133 1 187 305 115 46 chr9 38387348 38387522 -79475105 - L2 LINE L2 -1038 2276 2091 5531 106 16 13 chr9 38387601 38388391 -79474236 + HSMAR1 DNA Mariner 1 793 -494 2304 101 3 0 chr9 38388391 38388689 -79473938 - AluSx SINE Alu -13 299 1 1772 156 46 0 chr9 38388691 38388974 -79473653 - AluSx SINE Alu -16 296 1 2167 115 0 10 chr9 38389083 38389378 -79473249 - AluSx SINE Alu -18 294 3 26 50 0 0 chr9 38389382 38389422 -79473205 + AT_rich Low_complexity Low_complexity 1 40 0 441 153 0 0 chr9 38389423 38389482 -79473145 - FLAM SINE Alu -26 117 59 423 111 312 0 chr9 38389586 38389692 -79472935 - MER30 DNA MER1_type -79 151 4 393 296 170 57 chr9 38389698 38390547 -79472080 + L2 LINE L2 2324 3259 -13 316 139 0 0 chr9 38390547 38390590 -79472037 + (TG)n Simple_repeat Simple_repeat 1 43 0 2214 86 4 4 chr9 38390593 38390872 -79471755 - AluSx SINE Alu -33 279 1 418 272 109 64 chr9 38390936 38391340 -79471287 + L1M4 LINE L1 4339 4760 -1386 2393 57 0 10 chr9 38391343 38391639 -79470988 - AluY SINE Alu -18 293 1 1817 191 103 2 chr9 38392307 38392706 -79469921 - REP3 LTR ERV 0 562 124 936 187 42 0 chr9 38392705 38392871 -79469756 - MER82 DNA MER2_type -462 191 19 * 2006 129 0 22 chr9 38394008 38394319 -79468308 - AluSx SINE Alu -8 304 1 231 231 0 39 chr9 38394327 38394379 -79468248 - MLT1J LTR MaLR -74 437 388 606 309 59 38 chr9 38394411 38394647 -79467980 - MLT1J LTR MaLR -193 318 78 728 269 65 7 chr9 38394729 38395023 -79467604 - L1M4 LINE L1 -1416 4730 4420 1155 158 96 14 chr9 38395301 38395510 -79467117 + MER30 DNA MER1_type 5 230 0 2073 128 0 3 chr9 38395685 38395973 -79466654 - AluSx SINE Alu -25 287 1 257 282 86 53 chr9 38396439 38396633 -79465994 + MIR SINE MIR 16 212 -50 382 232 24 64 chr9 38397568 38397693 -79464934 + MIR3 SINE MIR 2 121 -87 1166 156 47 5 chr9 38398033 38398244 -79464383 - MER46A DNA MER2_type 0 236 17 2274 83 0 49 chr9 38398301 38398627 -79464000 - AluY SINE Alu -1 310 1 1337 221 165 21 chr9 38398653 38399236 -79463391 - HsTC2 DNA Tc2 -60 1838 7 2283 84 0 3 chr9 38399239 38399523 -79463104 + AluSq SINE Alu 1 283 -30 256 267 20 30 chr9 38399647 38399748 -79462879 - L1ME3A LINE L1 -71 6099 6000 256 217 232 0 chr9 38399819 38399888 -79462739 - AluSc SINE Alu -7 292 208 494 180 66 33 chr9 38399990 38400112 -79462515 + MER20 DNA MER1_type 70 195 -24 21 0 0 0 chr9 38400318 38400339 -79462288 + AT_rich Low_complexity Low_complexity 1 21 0 959 220 0 6 chr9 38400339 38400507 -79462120 + FAM SINE Alu 4 170 -5 21 0 0 0 chr9 38400890 38400911 -79461716 + AT_rich Low_complexity Low_complexity 1 21 0 308 290 0 0 chr9 38400924 38400993 -79461634 - MER3 DNA MER1_type -131 78 10 1602 166 107 74 chr9 38401132 38401203 -79461424 - L1MB7 LINE L1 -1 6183 6116 2189 108 0 3 chr9 38401203 38401491 -79461136 + AluSx SINE Alu 1 287 -25 1602 166 107 74 chr9 38401491 38401895 -79460732 - L1MB7 LINE L1 -68 6116 5693 1028 188 33 19 chr9 38401913 38402183 -79460444 - L1MB7 LINE L1 -693 5491 5214 347 256 37 0 chr9 38402861 38402943 -79459684 - L2 LINE L2 -2 3270 3186 294 204 99 84 chr9 38403162 38403304 -79459323 - L1P4 LINE L1 -343 5820 5677 221 368 21 21 chr9 38404295 38404390 -79458237 + MIR SINE MIR 16 110 -152 456 193 83 28 chr9 38404614 38404723 -79457904 - MLT1E1 LTR MaLR -22 632 518 2489 63 7 0 chr9 38404739 38405039 -79457588 - AluSc SINE Alu -6 303 2 1522 174 34 34 chr9 38405042 38405335 -79457292 - AluJb SINE Alu -19 293 1 252 242 22 22 chr9 38405335 38405426 -79457201 + L1MEd LINE L1 87 177 -5942 345 317 56 52 chr9 38405473 38405722 -79456905 + L1MEd LINE L1 315 564 -5555 1470 179 24 30 chr9 38405806 38406102 -79456525 + MER49 LTR ERV1 1 294 -629 1190 223 61 31 chr9 38406146 38406473 -79456154 + MER4D LTR ERV1 567 903 0 349 231 179 15 chr9 38406480 38406614 -79456013 - MER5A DNA MER1_type 0 189 34 2302 81 0 0 chr9 38407762 38408045 -79454582 - AluSx SINE Alu -29 283 1 2397 81 0 3 chr9 38408054 38408352 -79454275 - AluSx SINE Alu -13 299 3 786 172 39 0 chr9 38408363 38408491 -79454136 - FLAM_A SINE Alu 0 133 1 670 229 20 7 chr9 38408520 38408673 -79453954 - MLT1F LTR MaLR -387 155 1 4021 85 21 0 chr9 38409035 38409553 -79453074 - L1PA13 LINE L1 0 6163 5635 509 186 81 16 chr9 38409653 38409777 -79452850 - MER3 DNA MER1_type -77 132 1 647 241 104 41 chr9 38410447 38410827 -79451800 + MLT1G LTR MaLR 115 543 -12 1803 141 37 27 chr9 38410993 38411291 -79451336 - AluJb SINE Alu -11 301 1 2057 105 16 33 chr9 38412059 38412365 -79450262 + AluSx SINE Alu 1 301 -11 1162 148 48 0 chr9 38412941 38413130 -79449497 - AluSg/x SINE Alu -5 307 110 225 94 0 0 chr9 38413255 38413287 -79449340 + (CA)n Simple_repeat Simple_repeat 2 33 0 2159 118 0 0 chr9 38413693 38413980 -79448647 - AluSx SINE Alu -25 287 1 633 207 0 0 chr9 38414145 38414256 -79448371 + AluJb SINE Alu 202 312 0 622 194 28 0 chr9 38414263 38414514 -79448113 + GA-rich Low_complexity Low_complexity 1 258 0 310 239 91 11 chr9 38414756 38414844 -79447783 - MIR SINE MIR -148 114 20 308 199 82 75 chr9 38415226 38415258 -79447369 + MER5A DNA MER1_type 4 34 -155 551 209 86 0 chr9 38415258 38415363 -79447264 + MER81 DNA DNA 1 114 0 308 199 82 75 chr9 38415363 38415452 -79447175 + MER5A DNA MER1_type 34 126 -63 205 50 25 25 chr9 38418496 38418536 -79444091 + (CGCGG)n Simple_repeat Simple_repeat 3 42 0 268 328 87 60 chr9 38419113 38419296 -79443331 + MIR3 SINE MIR 6 193 -15 727 119 25 25 chr9 38420137 38420255 -79442372 - AluJo SINE Alu 0 312 195 847 162 7 7 chr9 38420255 38420397 -79442230 - AluJo SINE Alu -170 142 1 623 190 8 33 chr9 38420596 38420717 -79441910 + MER3 DNA MER1_type 10 127 -82 21 0 0 0 chr9 38420908 38420929 -79441698 + AT_rich Low_complexity Low_complexity 1 21 0 349 267 74 30 chr9 38421118 38421253 -79441374 + L2 LINE L2 1560 1700 -1614 813 257 122 65 chr9 38421275 38422286 -79440341 - L1M4 LINE L1 -1029 5117 3883 2018 110 21 14 chr9 38422286 38422577 -79440050 + AluSx SINE Alu 1 293 -19 813 257 122 65 chr9 38422577 38422967 -79439660 - L1M4 LINE L1 -2263 3883 3516 207 277 190 76 chr9 38423764 38423948 -79438679 + L2 LINE L2 3062 3266 -6 1016 113 0 0 chr9 38424177 38424310 -79438317 + AluJb SINE Alu 1 133 -179 599 258 50 57 chr9 38425122 38425401 -79437226 - L1MC4a LINE L1 -1971 5837 5561 989 155 63 43 chr9 38425410 38425617 -79437010 - AluJb SINE Alu -17 295 85 1972 158 7 0 chr9 38426203 38426506 -79436121 + AluSx SINE Alu 1 305 -7 742 141 14 7 chr9 38426516 38426658 -79435969 + GA-rich Low_complexity Low_complexity 1 143 0 1337 102 0 0 chr9 38427624 38427800 -79434827 - AluSg/x SINE Alu -11 299 124 1276 109 36 41 chr9 38428147 38428367 -79434260 + L1MB3 LINE L1 5963 6181 -2 3321 132 39 26 chr9 38428370 38428865 -79433762 + L1MB3 LINE L1 5204 5796 -387 1808 166 3 27 chr9 38428865 38429166 -79433461 - AluSx SINE Alu -18 294 1 3321 132 39 26 chr9 38429166 38429350 -79433277 + L1MB3 LINE L1 5796 5976 -207 594 282 94 35 chr9 38429350 38429671 -79432956 + L2 LINE L2 2697 3029 -243 678 213 131 46 chr9 38429695 38429753 -79432874 + L1MB7 LINE L1 5808 5860 -320 2336 129 83 44 chr9 38429753 38429955 -79432672 + MSTB LTR MaLR 1 194 -232 2095 106 13 20 chr9 38429955 38430088 -79432539 + AluSx SINE Alu 1 133 -179 2262 106 3 0 chr9 38430088 38430380 -79432247 + AluSp SINE Alu 1 293 -20 2095 106 13 20 chr9 38430380 38430547 -79432080 + AluSx SINE Alu 133 299 -13 2336 129 83 44 chr9 38430547 38430754 -79431873 + MSTB LTR MaLR 194 426 0 678 213 131 46 chr9 38430754 38430911 -79431716 + L1MB7 LINE L1 5860 6040 -140 * 5837 168 68 31 chr9 38430888 38431712 -79430915 - L1PBa LINE L1 -1624 5238 4445 2339 68 0 7 chr9 38431712 38432004 -79430623 + AluSp SINE Alu 14 303 -10 5837 168 68 31 chr9 38432004 38434036 -79428591 - L1PBa LINE L1 -2417 4445 349 1402 154 21 9 chr9 38434040 38434273 -79428354 - AluSg/x SINE Alu -4 308 73 1948 136 0 0 chr9 38434359 38434645 -79427982 + AluSx SINE Alu 1 286 -26 4326 96 4 0 chr9 38434699 38435251 -79427376 + MER41A LTR ERV1 1 554 0 554 127 0 0 chr9 38435353 38435432 -79427195 - AluSp/q SINE Alu -13 300 222 1372 130 0 0 chr9 38435877 38436069 -79426558 - AluY SINE Alu -119 192 1 2341 98 3 0 chr9 38436486 38436793 -79425834 - AluSp SINE Alu -5 308 1 387 280 100 38 chr9 38436903 38437142 -79425485 + HAL1 LINE L1 1407 1660 -847 284 211 23 98 chr9 38437756 38437794 -79424833 + L1MEd LINE L1 55 94 -6025 2332 77 7 3 chr9 38437794 38438093 -79424534 - AluSp SINE Alu -13 300 1 1575 167 34 34 chr9 38438095 38438388 -79424239 - AluJb SINE Alu -19 293 1 284 211 23 98 chr9 38438388 38438479 -79424148 + L1MEd LINE L1 95 177 -5942 345 317 56 52 chr9 38438526 38438775 -79423852 + L1MEd LINE L1 315 564 -5555 1605 163 24 27 chr9 38438859 38439154 -79423473 + MER49 LTR ERV1 1 294 -629 1395 196 61 28 chr9 38439198 38439524 -79423103 + MER4D LTR ERV1 567 903 0 349 231 179 15 chr9 38439531 38439665 -79422962 - MER5A DNA MER1_type 0 189 34 1984 121 35 0 chr9 38440801 38441083 -79421544 - AluSc SINE Alu -17 292 1 187 305 115 46 chr9 38441932 38442106 -79420521 - L2 LINE L2 -1038 2276 2091 9473 101 14 18 chr9 38442185 38442974 -79419653 + HSMAR1 DNA Mariner 1 785 -502 2395 84 7 0 chr9 38442974 38443272 -79419355 - AluSq SINE Alu -13 300 1 9473 101 14 18 chr9 38443272 38443774 -79418853 + HSMAR1 DNA Mariner 785 1287 0 336 272 83 50 chr9 38443895 38444075 -79418552 - L1 LINE L1 -1488 4658 4473 3295 112 79 41 chr9 38444095 38444401 -79418226 + MER41A LTR ERV1 1 337 -217 2204 108 0 0 chr9 38444401 38444688 -79417939 - AluSx SINE Alu -18 294 8 3295 112 79 41 chr9 38444688 38444915 -79417712 + MER41A LTR ERV1 337 554 0 529 221 123 0 chr9 38445101 38445255 -79417372 + L1ME1 LINE L1 5993 6165 -1 358 278 169 16 chr9 38445401 38445463 -79417164 + L1ME3A LINE L1 5666 5717 -453 190 0 32 32 chr9 38445463 38445494 -79417133 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 358 278 169 16 chr9 38445494 38445679 -79416948 + L1ME3A LINE L1 5717 5951 -219 600 274 208 22 chr9 38446845 38447210 -79415417 + L2 LINE L2 2332 2764 -550 265 311 155 14 chr9 38447221 38447369 -79415258 + L2 LINE L2 2916 3084 -188 1977 124 0 24 chr9 38447459 38447773 -79414854 - AluSq SINE Alu 0 307 1 2335 94 10 0 chr9 38447789 38448098 -79414529 - AluSp SINE Alu -1 312 1 2344 96 7 0 chr9 38449472 38449774 -79412853 - AluSc SINE Alu -5 304 1 5291 67 63 0 chr9 38449914 38450561 -79412066 - LTR12 LTR ERV1 0 688 1 554 86 0 0 chr9 38450847 38450917 -79411710 - Alu SINE Alu -16 294 225 1176 137 0 0 chr9 38450917 38451078 -79411549 - AluSq SINE Alu -152 161 1 347 299 164 8 chr9 38451682 38451816 -79410811 + MIR3 SINE MIR 2 156 -52 269 123 0 77 chr9 38452468 38452533 -79410094 - L1MA4A LINE L1 -307 5996 5937 2011 77 67 27 chr9 38452798 38453095 -79409532 - AluSc SINE Alu 0 309 1 2119 130 0 3 chr9 38453170 38453470 -79409157 + AluSg SINE Alu 1 299 -11 509 185 0 22 chr9 38453561 38453653 -79408974 + MER21B LTR ERV1 1 90 -773 1572 212 72 40 chr9 38453698 38454096 -79408531 + MER21B LTR ERV1 87 497 -366 1696 170 84 9 chr9 38454096 38454419 -79408208 + MER7A DNA MER2_type 1 345 -1 966 242 71 30 chr9 38454424 38454721 -79407906 + MER21B LTR ERV1 501 809 -54 28 0 0 26 chr9 38455082 38455099 -79407528 + AT_rich Low_complexity Low_complexity 1 17 -21 2157 91 11 3 chr9 38455099 38455384 -79407243 + AluSp SINE Alu 1 287 -26 28 0 0 26 chr9 38455384 38455405 -79407222 + AT_rich Low_complexity Low_complexity 17 38 0 403 276 89 44 chr9 38455581 38455644 -79406983 + HAL1 LINE L1 2269 2328 -179 1341 206 47 38 chr9 38455644 38455797 -79406830 - MER2 DNA MER2_type -1 343 193 2048 112 0 50 chr9 38455797 38456100 -79406527 - AluSg SINE Alu -17 293 6 1341 206 47 38 chr9 38456100 38456286 -79406341 - MER2 DNA MER2_type -151 193 1 403 276 89 44 chr9 38456286 38456447 -79406180 + HAL1 LINE L1 2328 2503 -4 366 307 44 9 chr9 38456520 38456634 -79405993 + L2 LINE L2 3195 3312 -1 283 284 108 39 chr9 38456702 38456804 -79405823 + L2 LINE L2 3186 3294 -19 222 118 0 0 chr9 38457120 38457154 -79405473 + (TA)n Simple_repeat Simple_repeat 1 34 0 2156 111 10 0 chr9 38457173 38457471 -79405156 - AluY SINE Alu -10 301 1 1789 160 20 57 chr9 38457497 38457598 -79405029 - MLT1A1 LTR MaLR 0 365 262 2083 122 7 0 chr9 38457598 38457884 -79404743 + AluSp SINE Alu 3 290 -23 507 33 0 0 chr9 38457887 38457948 -79404679 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 1789 160 20 57 chr9 38457948 38458192 -79404435 - MLT1A1 LTR MaLR -105 260 29 202 225 0 100 chr9 38458317 38458397 -79404230 + T-rich Low_complexity Low_complexity 2 73 0 195 330 220 0 chr9 38458398 38458498 -79404129 - L2 LINE L2 -18 3254 3133 506 216 96 78 chr9 38458628 38458846 -79403781 - MIR SINE MIR -12 250 29 2166 191 174 11 chr9 38458868 38459419 -79403208 + L1MB7 LINE L1 5521 6161 -23 186 43 0 0 chr9 38459429 38459452 -79403175 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1391 96 6 0 chr9 38459611 38459789 -79402838 + AluSg SINE Alu 1 179 -131 303 125 0 21 chr9 38459951 38459999 -79402628 + AluS SINE Alu 26 72 -229 2175 89 17 0 chr9 38460430 38460721 -79401906 - AluSg SINE Alu -14 296 1 21 36 0 0 chr9 38461565 38461593 -79401034 + AT_rich Low_complexity Low_complexity 1 28 0 2211 95 3 3 chr9 38461600 38461885 -79400742 + AluSc SINE Alu 2 286 -23 652 92 0 0 chr9 38462251 38462338 -79400289 - AluS SINE Alu -225 88 2 1425 139 19 56 chr9 38462342 38462609 -79400018 - L1M3 LINE L1 -512 5668 5412 2396 42 0 14 chr9 38462738 38463047 -79399580 + AluY SINE Alu 2 306 0 259 182 0 0 chr9 38463454 38463498 -79399129 - L1ME LINE L1 -460 5661 5618 25 51 0 0 chr9 38463535 38463574 -79399053 + AT_rich Low_complexity Low_complexity 1 39 0 2055 135 7 0 chr9 38463747 38464036 -79398591 + AluSx SINE Alu 1 291 -21 374 0 22 0 chr9 38464458 38464504 -79398123 + (TG)n Simple_repeat Simple_repeat 2 48 0 767 261 38 11 chr9 38464668 38464929 -79397698 + L1MC5 LINE L1 6961 7228 -733 339 323 45 18 chr9 38464948 38465171 -79397456 + L2 LINE L2 1782 2010 -1304 851 210 88 93 chr9 38465186 38465505 -79397122 - MLT1H1 LTR MaLR -4 551 233 4600 102 39 49 chr9 38465505 38466279 -79396348 + MER4E LTR ERV1 1 766 0 851 210 88 93 chr9 38466279 38466355 -79396272 - MLT1H1 LTR MaLR -322 233 158 2076 89 33 36 chr9 38466491 38466652 -79395975 - AluY SINE Alu -8 303 142 2473 77 3 0 chr9 38466652 38466949 -79395678 - AluSp SINE Alu -15 298 1 2076 89 33 36 chr9 38466949 38467091 -79395536 - AluY SINE Alu -169 142 1 612 243 144 8 chr9 38467093 38467336 -79395291 + Charlie7 DNA MER1_type 1991 2266 -346 1272 147 0 0 chr9 38467354 38467538 -79395089 + AluSg/x SINE Alu 114 297 -13 38 75 0 0 chr9 38467661 38467741 -79394886 + AT_rich Low_complexity Low_complexity 1 80 0 2243 92 0 27 chr9 38467754 38468092 -79394535 - AluSp SINE Alu 0 330 1 2044 84 29 4 chr9 38468096 38468429 -79394198 - AluSc SINE Alu 0 340 1 540 236 150 7 chr9 38468431 38468571 -79394056 - FRAM SINE Alu -6 160 1 1146 177 0 56 chr9 38468625 38468857 -79393770 - AluJo SINE Alu -92 220 2 250 302 0 0 chr9 38469291 38469354 -79393273 + L2 LINE L2 3169 3231 -41 284 248 128 9 chr9 38469429 38469538 -79393089 + LTR67 LTR ERVL 436 557 0 1856 100 68 25 chr9 38469593 38469873 -79392754 - AluSq SINE Alu -21 292 1 2150 136 0 0 chr9 38469875 38470170 -79392457 - AluSx SINE Alu -17 295 1 1949 142 48 0 chr9 38470322 38470611 -79392016 - AluSx SINE Alu -9 303 1 278 301 148 43 chr9 38470629 38470838 -79391789 - MIR SINE MIR -3 259 29 1729 67 31 5 chr9 38471602 38471825 -79390802 + MER30 DNA MER1_type 1 229 -1 1689 153 32 7 chr9 38471896 38472177 -79390450 + AluJb SINE Alu 1 288 -24 193 297 59 40 chr9 38472437 38472538 -79390089 + L2 LINE L2 3179 3281 -32 2392 70 13 0 chr9 38473291 38473593 -79389034 - AluY SINE Alu -5 306 1 2353 53 3 30 chr9 38474208 38474510 -79388117 + AluY SINE Alu 3 296 -15 262 269 43 11 chr9 38474860 38474953 -79387674 - L1MC4a LINE L1 -1639 6169 6074 296 286 32 65 chr9 38475022 38475176 -79387451 - L1MC4a LINE L1 -1871 5937 5789 390 219 73 51 chr9 38475211 38475348 -79387279 - L2 LINE L2 0 3313 3174 21 0 0 0 chr9 38475705 38475726 -79386901 + AT_rich Low_complexity Low_complexity 1 21 0 308 284 96 23 chr9 38476345 38476626 -79386001 - LTR38B LTR ERV1 -1 555 267 3492 174 28 32 chr9 38476627 38477344 -79385283 + L1MD1 LINE L1 5527 6240 -2 233 275 14 0 chr9 38477345 38477414 -79385213 + L1 LINE L1 4766 4835 -1311 396 256 26 8 chr9 38477420 38477537 -79385090 - LTR16C LTR ERVL -7 484 366 312 49 0 0 chr9 38477595 38477636 -79384991 + MLT2B2 LTR ERVL 1 41 -474 1037 90 0 0 chr9 38477737 38477871 -79384756 + AluY SINE Alu 156 289 -22 1733 165 28 30 chr9 38477876 38478239 -79384388 + L1MB7 LINE L1 5814 6175 -9 405 296 0 15 chr9 38478284 38478416 -79384211 + L1ME3A LINE L1 6041 6170 0 250 250 10 50 chr9 38478418 38478518 -79384109 + L1MC4a LINE L1 5827 5922 -1886 2292 95 0 3 chr9 38478707 38479001 -79383626 + AluSx SINE Alu 1 293 -19 302 182 15 0 chr9 38479026 38479092 -79383535 + (CATATA)n Simple_repeat Simple_repeat 5 71 0 255 137 95 63 chr9 38479108 38479203 -79383424 + Charlie2 DNA MER1_type 2728 2825 -37 182 157 98 20 chr9 38479304 38479355 -79383272 + MIR3 SINE MIR 109 163 -45 1648 197 10 10 chr9 38479771 38480070 -79382557 + AluJo SINE Alu 1 299 -13 358 211 0 0 chr9 38480235 38480306 -79382321 - LTR33 LTR ERVL -450 71 1 2415 94 0 0 chr9 38480341 38480640 -79381987 + AluSq SINE Alu 1 299 -14 2194 123 0 0 chr9 38480643 38480935 -79381692 + AluSg SINE Alu 1 292 -18 2441 83 0 3 chr9 38481189 38481489 -79381138 + AluSp SINE Alu 1 299 -14 2031 132 0 10 chr9 38481505 38481815 -79380812 + AluJb SINE Alu 1 307 -5 322 258 57 32 chr9 38481880 38482004 -79380623 + MER5A DNA MER1_type 1 127 -62 496 175 78 0 chr9 38483358 38483461 -79379166 + FLAM_A SINE Alu 24 134 -8 715 186 16 0 chr9 38483576 38483700 -79378927 - FLAM_A SINE Alu -4 129 4 24 53 0 0 chr9 38483820 38483858 -79378769 + AT_rich Low_complexity Low_complexity 1 38 0 507 105 56 5 chr9 38484201 38484324 -79378303 - MER30 DNA MER1_type -37 193 1 1919 121 0 83 chr9 38484635 38484980 -79377647 + AluSq SINE Alu 1 319 0 797 168 0 0 chr9 38484991 38485116 -79377511 + FLAM_A SINE Alu 1 125 -8 2220 107 3 3 chr9 38485117 38485406 -79377221 + AluSq SINE Alu 1 289 -24 23 0 0 0 chr9 38485407 38485430 -79377197 + AT_rich Low_complexity Low_complexity 1 23 0 1868 78 0 9 chr9 38485518 38485750 -79376877 + AluSg1 SINE Alu 3 232 -77 240 275 17 25 chr9 38486295 38486415 -79376212 - L1 LINE L1 -1538 4608 4490 530 263 110 54 chr9 38486432 38486858 -79375769 - L1 LINE L1 -1830 4316 3867 274 274 64 34 chr9 38486981 38487202 -79375425 - MER46C DNA MER2_type -7 331 68 374 244 133 99 chr9 38487236 38487308 -79375319 - L1 LINE L1 -3126 3020 2952 2052 102 3 32 chr9 38487308 38487593 -79375034 - AluSc SINE Alu -32 277 1 374 244 133 99 chr9 38487593 38487852 -79374775 - L1 LINE L1 -3194 2952 2678 771 146 0 8 chr9 38487971 38488094 -79374533 - AluSg/x SINE Alu -96 216 95 1691 149 20 33 chr9 38488216 38488518 -79374109 - AluSx SINE Alu -14 298 1 2372 97 0 3 chr9 38488519 38488830 -79373797 - AluSx SINE Alu 0 312 3 1931 161 0 7 chr9 38490548 38490839 -79371788 - AluSx SINE Alu -23 289 1 1166 102 28 11 chr9 38490881 38491057 -79371570 - L1PA11 LINE L1 -4 6170 5992 285 176 194 9 chr9 38491219 38491327 -79371300 + Charlie8 DNA MER1_type 31 158 -2259 21 0 0 0 chr9 38491810 38491831 -79370796 + AT_rich Low_complexity Low_complexity 1 21 0 2461 98 0 0 chr9 38492160 38492467 -79370160 + AluSx SINE Alu 6 312 0 2238 123 7 0 chr9 38492620 38492930 -79369697 + AluSx SINE Alu 1 312 0 2225 129 0 0 chr9 38493191 38493494 -79369133 + AluSx SINE Alu 1 303 -9 696 160 8 25 chr9 38493535 38493654 -79368973 - FLAM_C SINE Alu -26 117 1 2358 86 3 3 chr9 38494630 38494933 -79367694 - AluSp SINE Alu -10 303 1 22 0 0 0 chr9 38494937 38494959 -79367668 + AT_rich Low_complexity Low_complexity 1 22 0 1965 78 112 4 chr9 38495045 38495314 -79367313 - AluYa8 SINE Alu -10 300 3 1617 161 9 52 chr9 38495444 38495621 -79367006 - AluJb SINE Alu -2 310 152 2404 71 3 7 chr9 38495621 38495929 -79366698 - AluY SINE Alu -4 307 1 1617 161 9 52 chr9 38495929 38496075 -79366552 - AluJb SINE Alu -160 152 1 2276 91 3 7 chr9 38496131 38496427 -79366200 - AluSg1 SINE Alu -14 295 1 211 111 22 22 chr9 38496852 38496897 -79365730 + (TA)n Simple_repeat Simple_repeat 2 46 0 279 0 0 0 chr9 38496901 38496932 -79365695 + (CA)n Simple_repeat Simple_repeat 2 32 0 4132 212 79 23 chr9 38497194 38497644 -79364983 - L1MD2 LINE L1 -21 6338 5915 2160 112 3 7 chr9 38497644 38497953 -79364674 - AluSq SINE Alu 0 308 1 4132 212 79 23 chr9 38497953 38498696 -79363931 - L1MD2 LINE L1 -444 5915 5077 347 231 46 88 chr9 38498720 38498940 -79363687 + MER65-int LTR ERV1 1658 1801 -3070 2302 78 10 13 chr9 38498946 38499119 -79363508 - AluSq SINE Alu -6 307 134 2506 42 3 13 chr9 38499119 38499428 -79363199 - AluY SINE Alu -5 306 1 2302 78 10 13 chr9 38499428 38499562 -79363065 - AluSq SINE Alu -179 134 1 815 267 0 0 chr9 38499661 38499841 -79362786 - MER5A DNA MER1_type -6 183 4 7526 40 3 2 chr9 38500073 38501413 -79361214 - L1PA5 LINE L1 -2 6152 4813 19335 52 1 3 chr9 38501515 38503879 -79358748 - L1PA5 LINE L1 -3733 2413 56 2442 77 0 13 chr9 38503985 38504284 -79358343 - AluSg SINE Alu -15 295 1 2453 42 0 11 chr9 38504369 38504691 -79357936 - AluY SINE Alu 0 319 1 252 291 74 11 chr9 38504692 38504867 -79357760 + L1ME3A LINE L1 5767 5952 -218 270 279 10 19 chr9 38505380 38505484 -79357143 - MER5B DNA MER1_type -74 104 2 2575 44 0 3 chr9 38506175 38506471 -79356156 - AluY SINE Alu -16 295 1 2241 162 25 62 chr9 38506471 38506595 -79356032 - L1MB7 LINE L1 -353 5831 5704 2269 115 7 0 chr9 38506595 38506900 -79355727 + AluSp SINE Alu 1 307 -6 2241 162 25 62 chr9 38506900 38507257 -79355370 - L1MB7 LINE L1 -480 5704 5368 427 103 0 0 chr9 38507655 38507713 -79354914 - Alu SINE Alu -16 295 238 790 224 51 23 chr9 38507827 38508041 -79354586 + LTR16B LTR ERVL 244 463 -1 228 200 125 25 chr9 38508828 38508908 -79353719 + MER77 LTR ERV1 53 140 -465 774 247 199 11 chr9 38509053 38509324 -79353303 + MER77 LTR ERV1 277 598 -7 396 270 212 17 chr9 38509507 38509800 -79352827 + L1MC4 LINE L1 6690 7039 -1003 1904 154 0 7 chr9 38510059 38510357 -79352270 + AluSx SINE Alu 1 296 -16 2243 116 0 3 chr9 38510537 38510840 -79351787 + AluSx SINE Alu 1 302 -10 2176 110 0 17 chr9 38510992 38511292 -79351335 + AluSx SINE Alu 1 295 -17 610 187 110 70 chr9 38511332 38511599 -79351028 - L1MC5 LINE L1 -37 7924 7646 1344 185 27 64 chr9 38511599 38511741 -79350886 + AluJo SINE Alu 1 128 -174 2341 97 3 3 chr9 38511741 38512039 -79350588 + AluSx SINE Alu 4 301 -11 1344 185 27 64 chr9 38512039 38512069 -79350558 + AluJo SINE Alu 128 286 -16 807 161 0 8 chr9 38512069 38512193 -79350434 + AluJb SINE Alu 164 286 -26 3363 149 49 35 chr9 38512213 38512588 -79350039 + L1MB7 LINE L1 5445 5834 -350 2182 128 3 0 chr9 38512588 38512886 -79349741 + AluSx SINE Alu 1 299 -13 3363 149 49 35 chr9 38512886 38513186 -79349441 + L1MB7 LINE L1 5834 6129 -55 679 220 0 23 chr9 38513187 38513319 -79349308 - FRAM SINE Alu -22 154 26 2298 86 0 0 chr9 38513422 38513712 -79348915 - AluY SINE Alu -21 290 1 776 130 42 99 chr9 38514039 38514231 -79348396 - L1MB4 LINE L1 0 6180 6000 22 0 0 0 chr9 38514241 38514263 -79348364 + AT_rich Low_complexity Low_complexity 1 22 0 1991 98 4 0 chr9 38514610 38514865 -79347762 + AluSx SINE Alu 1 256 -56 448 247 49 58 chr9 38514926 38515149 -79347478 + L1MC5 LINE L1 7250 7470 -491 2248 103 0 7 chr9 38515159 38515461 -79347166 + AluSq SINE Alu 1 300 -13 189 0 0 0 chr9 38515470 38515491 -79347136 + (T)n Simple_repeat Simple_repeat 1 21 0 347 281 102 107 chr9 38515591 38516179 -79346448 - L1M2 LINE L1 -5446 1403 819 256 89 76 25 chr9 38517126 38517205 -79345422 + (TA)n Simple_repeat Simple_repeat 2 84 0 329 167 44 67 chr9 38517348 38517438 -79345189 + MIR3 SINE MIR 115 202 -6 584 224 8 30 chr9 38518250 38518384 -79344243 - FLAM_A SINE Alu 0 133 3 259 280 170 10 chr9 38518485 38518585 -79344042 + L2 LINE L2 3143 3258 -14 23 0 0 0 chr9 38519249 38519272 -79343355 + AT_rich Low_complexity Low_complexity 1 23 0 1758 116 11 54 chr9 38519272 38519548 -79343079 + AluSq SINE Alu 13 276 -37 1192 179 91 39 chr9 38519680 38519987 -79342640 - MER2 DNA MER2_type -22 323 1 24 53 0 0 chr9 38520061 38520099 -79342528 + AT_rich Low_complexity Low_complexity 1 38 0 2368 92 0 3 chr9 38520663 38520967 -79341660 - AluSx SINE Alu -9 303 1 1557 179 21 24 chr9 38522130 38522421 -79340206 + AluJo SINE Alu 12 301 -11 1201 235 28 84 chr9 38522649 38522834 -79339793 + MLT1A2 LTR MaLR 1 154 -220 1861 83 38 56 chr9 38522834 38523122 -79339505 + AluSc SINE Alu 2 284 -25 1201 235 28 84 chr9 38523122 38523328 -79339299 + MLT1A2 LTR MaLR 154 370 -4 1185 76 7 0 chr9 38523620 38523765 -79338862 + AluSq/x SINE Alu 1 146 -166 818 154 8 117 chr9 38523774 38524021 -79338606 + AluJo SINE Alu 85 304 -8 479 256 77 60 chr9 38524231 38524393 -79338234 - L1ME3 LINE L1 -265 5905 5723 2337 88 0 3 chr9 38524393 38524687 -79337940 - AluSq SINE Alu -20 293 1 479 256 77 60 chr9 38524687 38524804 -79337823 - L1ME3 LINE L1 -447 5723 5609 2394 88 0 0 chr9 38525382 38525687 -79336940 + AluSg SINE Alu 1 305 -5 277 258 132 19 chr9 38525698 38525857 -79336770 + L1MEd LINE L1 1007 1183 -4936 2222 114 0 23 chr9 38525859 38526167 -79336460 + AluSq SINE Alu 1 301 -12 1989 132 0 10 chr9 38526692 38526987 -79335640 - AluJb SINE Alu -20 292 1 25 31 0 0 chr9 38527044 38527076 -79335551 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr9 38527319 38527340 -79335287 + AT_rich Low_complexity Low_complexity 1 21 0 417 176 0 0 chr9 38527352 38527426 -79335201 + MER116 DNA Mariner 2 75 -5 1639 156 84 7 chr9 38528094 38528369 -79334258 + AluSx SINE Alu 1 296 -16 335 274 132 53 chr9 38529367 38529457 -79333170 + L1 LINE L1 3440 3522 -2624 2181 104 0 7 chr9 38529457 38529754 -79332873 + AluSx SINE Alu 1 295 -17 335 274 132 53 chr9 38529754 38529983 -79332644 + L1 LINE L1 3522 3784 -2362 263 247 149 7 chr9 38530862 38531006 -79331621 + L1 LINE L1 4032 4198 -1948 449 98 0 152 chr9 38531109 38531201 -79331426 + AluSc SINE Alu 216 293 -16 371 132 0 0 chr9 38531815 38531868 -79330759 + AluY SINE Alu 1 53 -249 2055 95 11 4 chr9 38531936 38532210 -79330417 - AluSq SINE Alu -37 276 1 2171 129 0 0 chr9 38533826 38534129 -79328498 + AluSx SINE Alu 1 303 -9 23 0 0 0 chr9 38534361 38534384 -79328243 + AT_rich Low_complexity Low_complexity 1 23 0 1842 206 73 50 chr9 38535191 38535525 -79327102 + L1MB7 LINE L1 5644 5996 -188 1671 98 4 43 chr9 38535525 38535780 -79326847 + AluY SINE Alu 55 299 -12 1842 206 73 50 chr9 38535780 38535968 -79326659 + L1MB7 LINE L1 5996 6178 -6 328 298 59 29 chr9 38536034 38536187 -79326440 - MIR SINE MIR -67 141 12 24 32 0 0 chr9 38536830 38536861 -79325766 + AT_rich Low_complexity Low_complexity 1 31 0 327 238 212 42 chr9 38537096 38537285 -79325342 + MIR SINE MIR 10 230 -32 27 0 0 0 chr9 38537670 38537697 -79324930 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr9 38538421 38538442 -79324185 + AT_rich Low_complexity Low_complexity 1 21 0 374 109 18 0 chr9 38538915 38538970 -79323657 + AluJ/FLAM SINE Alu 9 64 -238 2428 53 7 3 chr9 38539294 38539594 -79323033 - AluY SINE Alu -10 301 1 1279 198 0 89 chr9 38540136 38540450 -79322177 + AluJo SINE Alu 1 286 -26 414 0 0 0 chr9 38541159 38541205 -79321422 + (TG)n Simple_repeat Simple_repeat 1 46 0 1262 207 161 102 chr9 38541231 38541676 -79320951 + MLT1E1 LTR MaLR 28 516 -138 2458 73 7 0 chr9 38541676 38541977 -79320650 + AluSc SINE Alu 1 303 -6 1262 207 161 102 chr9 38541977 38542102 -79320525 + MLT1E1 LTR MaLR 516 632 -22 221 368 21 21 chr9 38542326 38542421 -79320206 - MIR SINE MIR -152 110 16 294 204 99 84 chr9 38543412 38543554 -79319073 + L1P4 LINE L1 5677 5820 -343 347 256 37 0 chr9 38543773 38543855 -79318772 + L2 LINE L2 3186 3270 -2 1373 120 8 51 chr9 38544836 38544882 -79317745 + AluSg/x SINE Alu 88 134 -178 2243 98 0 0 chr9 38544882 38545188 -79317439 + AluSx SINE Alu 1 306 0 1373 120 8 51 chr9 38545188 38545374 -79317253 + AluSg/x SINE Alu 134 311 -1 1166 156 47 5 chr9 38545431 38545642 -79316985 + MER46A DNA MER2_type 17 236 0 849 179 6 13 chr9 38546062 38546218 -79316409 + AluSg/x SINE Alu 144 298 -12 573 190 127 0 chr9 38546462 38546604 -79316023 + MIR SINE MIR 21 180 -82 2449 71 0 0 chr9 38546629 38546926 -79315701 + AluY SINE Alu 1 297 -14 521 282 89 28 chr9 38546930 38547143 -79315484 + L2 LINE L2 3074 3299 -14 2407 93 3 0 chr9 38547760 38548072 -79314555 + AluSp SINE Alu 1 313 0 1869 156 3 20 chr9 38548328 38548653 -79313974 + AluSx SINE Alu 1 312 0 1030 125 42 36 chr9 38548653 38548821 -79313806 + AluSg/x SINE Alu 132 300 -10 197 256 111 44 chr9 38548893 38548983 -79313644 + L2 LINE L2 3218 3313 0 257 282 86 53 chr9 38550814 38551008 -79311619 - MIR SINE MIR -50 212 16 1891 121 17 30 chr9 38551474 38551772 -79310855 + AluSx SINE Alu 1 294 -18 964 76 15 0 chr9 38551949 38552080 -79310547 - AluSq/x SINE Alu -179 133 1 2368 69 3 3 chr9 38552576 38552879 -79309748 + AluSq SINE Alu 1 303 -10 2476 70 0 3 chr9 38553033 38553333 -79309294 + AluSg SINE Alu 1 299 -11 897 171 7 0 chr9 38553333 38553479 -79309148 + AluSg/x SINE Alu 132 278 -32 2313 111 0 0 chr9 38554029 38554335 -79308292 - AluSx SINE Alu -6 306 1 206 78 59 20 chr9 38554483 38554534 -79308093 + (TA)n Simple_repeat Simple_repeat 2 54 0 382 226 24 0 chr9 38554538 38554622 -79308005 - MIR SINE MIR -60 202 117 2464 174 28 13 chr9 38555015 38555475 -79307152 + MLT1C LTR MaLR 1 467 0 251 246 18 91 chr9 38556237 38556347 -79306280 - L2 LINE L2 -19 3253 3152 2229 103 3 7 chr9 38556384 38556684 -79305943 + AluSx SINE Alu 2 300 -12 2249 80 7 13 chr9 38556691 38556990 -79305637 + AluSx SINE Alu 1 297 -15 2521 70 0 0 chr9 38557689 38557988 -79304639 + AluSx SINE Alu 1 299 -13 2367 93 3 6 chr9 38557991 38558303 -79304324 + AluSp SINE Alu 3 313 0 414 77 115 160 chr9 38558303 38558333 -79304294 + Charlie5 DNA MER1_type 2433 2463 -161 1386 200 62 22 chr9 38558333 38558608 -79304019 + AluJo SINE Alu 2 287 -25 414 77 115 160 chr9 38558608 38558733 -79303894 + Charlie5 DNA MER1_type 2463 2581 -43 808 97 0 9 chr9 38558733 38558846 -79303781 + AluSg/x SINE Alu 195 306 -3 293 146 21 0 chr9 38558846 38558894 -79303733 + Charlie5 DNA MER1_type 2576 2624 0 2108 114 17 0 chr9 38559174 38559472 -79303155 - AluSx SINE Alu -9 303 1 1079 234 40 63 chr9 38559477 38559827 -79302800 - MER20B DNA MER1_type -283 500 159 694 199 23 34 chr9 38559886 38560062 -79302565 - L1MD2 LINE L1 -11 6348 6175 558 268 13 26 chr9 38560062 38560215 -79302412 - L1MD2 LINE L1 -144 6215 6065 815 230 5 0 chr9 38560231 38560422 -79302205 + L1PBa LINE L1 6 197 -6666 * 5640 119 31 40 chr9 38560419 38561350 -79301277 + L1PBa LINE L1 1392 2315 -4548 2297 116 3 0 chr9 38561350 38561653 -79300974 + AluSx SINE Alu 1 304 -8 5640 119 31 40 chr9 38561653 38561712 -79300915 + L1PBa LINE L1 2315 2373 -4490 2232 89 7 7 chr9 38561713 38562006 -79300621 - AluSp SINE Alu -20 293 1 651 89 0 0 chr9 38562039 38562129 -79300498 - AluSp/q SINE Alu -9 304 215 1801 201 32 50 chr9 38562130 38562274 -79300353 - L1MD2 LINE L1 -469 5890 5745 1699 181 10 7 chr9 38562274 38562567 -79300060 + AluJb SINE Alu 1 294 -18 1801 201 32 50 chr9 38562567 38562732 -79299895 - L1MD2 LINE L1 -614 5745 5589 2437 93 0 0 chr9 38562732 38563042 -79299585 + AluSg SINE Alu 1 310 0 1801 201 32 50 chr9 38563042 38563169 -79299458 - L1MD2 LINE L1 -770 5589 5461 258 329 14 0 chr9 38563177 38563250 -79299377 - MER20B DNA MER1_type -708 75 2 752 269 6 6 chr9 38563257 38563432 -79299195 - MER5B DNA MER1_type -3 175 1 2074 122 4 0 chr9 38563506 38563777 -79298850 + AluSg SINE Alu 1 272 -38 2168 134 0 0 chr9 38564081 38564379 -79298248 + AluSx SINE Alu 3 300 -12 401 322 29 6 chr9 38564379 38564539 -79298088 + MIR SINE MIR 37 202 -60 2078 117 7 27 chr9 38564687 38564987 -79297640 + AluSx SINE Alu 1 294 -18 1945 128 29 4 chr9 38564987 38565268 -79297359 + AluSq SINE Alu 1 288 -25 2479 49 0 49 chr9 38565277 38565591 -79297036 + AluY SINE Alu 1 300 -11 183 42 0 0 chr9 38565591 38565615 -79297012 + (CA)n Simple_repeat Simple_repeat 2 25 0 2479 49 0 49 chr9 38565615 38565627 -79297000 + AluY SINE Alu 300 311 0 821 154 0 0 chr9 38565649 38565791 -79296836 - FLAM_C SINE Alu 0 142 1 333 247 177 70 chr9 38565812 38565905 -79296722 - MER5A DNA MER1_type -6 183 101 1988 134 20 13 chr9 38565905 38566067 -79296560 - AluJb SINE Alu -11 301 135 2242 94 14 10 chr9 38566067 38566364 -79296263 - AluSg SINE Alu -12 298 1 1988 134 20 13 chr9 38566364 38566500 -79296127 - AluJb SINE Alu -177 135 1 333 247 177 70 chr9 38566500 38566564 -79296063 - MER5A DNA MER1_type -88 101 9 1045 258 67 60 chr9 38566576 38566814 -79295813 - L1MC5 LINE L1 -90 7871 7636 2495 84 0 0 chr9 38566814 38567125 -79295502 - AluY SINE Alu 0 311 1 1045 258 67 60 chr9 38567125 38567230 -79295397 - L1MC5 LINE L1 -325 7636 7533 2193 113 30 0 chr9 38567230 38567530 -79295097 - AluSg SINE Alu -1 309 1 1045 258 67 60 chr9 38567530 38567802 -79294825 - L1MC5 LINE L1 -428 7533 7251 1997 123 0 24 chr9 38568044 38568373 -79294254 - AluSx SINE Alu 0 322 1 1048 156 57 62 chr9 38568375 38568586 -79294041 - AluJo SINE Alu -14 298 89 617 190 91 0 chr9 38568608 38568729 -79293898 + FLAM_C SINE Alu 1 132 -1 1146 128 69 0 chr9 38568742 38568930 -79293697 + AluSp SINE Alu 3 203 -110 512 124 0 5 chr9 38568930 38569051 -79293576 + AluSp SINE Alu 69 249 -64 1202 163 9 23 chr9 38569052 38569273 -79293354 + AluSg/x SINE Alu 83 300 -10 863 189 13 13 chr9 38569299 38569458 -79293169 + FRAM SINE Alu 1 159 -17 2405 112 0 0 chr9 38569778 38570090 -79292537 - AluSx SINE Alu 0 312 1 2359 89 3 16 chr9 38570100 38570414 -79292213 - AluSq SINE Alu -3 310 1 378 344 37 23 chr9 38570672 38570890 -79291737 + L1M4 LINE L1 2882 3102 -3044 789 135 0 57 chr9 38571029 38571170 -79291457 - FLAM_C SINE Alu 0 133 1 2587 71 3 0 chr9 38571184 38571494 -79291133 - AluSp SINE Alu -2 311 1 1878 143 11 0 chr9 38571496 38571776 -79290851 - AluJo SINE Alu -19 293 11 1667 130 8 50 chr9 38572079 38572340 -79290287 - AluSx SINE Alu -14 298 49 1977 117 19 49 chr9 38572546 38572682 -79289945 + AluSx SINE Alu 1 139 -173 2477 100 0 0 chr9 38572682 38572992 -79289635 + AluSx SINE Alu 1 310 -2 1977 117 19 49 chr9 38572992 38573162 -79289465 + AluSx SINE Alu 139 298 -14 1137 143 6 0 chr9 38573162 38573337 -79289290 + AluSg/x SINE Alu 132 307 -3 2193 82 14 4 chr9 38573342 38573648 -79288979 + AluSc SINE Alu 1 309 0 2127 120 0 17 chr9 38573890 38574182 -79288445 - AluSx SINE Alu -25 287 1 741 275 77 62 chr9 38574284 38574753 -79287874 + MLT1K LTR MaLR 1 476 0 589 198 85 28 chr9 38574766 38574943 -79287684 + MLT1G3 LTR MaLR 7 193 -402 817 219 227 0 chr9 38574954 38575192 -79287435 + MLT1G3 LTR MaLR 144 435 -95 1107 119 0 13 chr9 38575192 38575343 -79287284 - AluSg/x SINE Alu -82 230 82 327 127 0 32 chr9 38575363 38575426 -79287201 + MLT1G3 LTR MaLR 481 541 -1 2050 138 3 10 chr9 38575485 38575797 -79286830 + AluSx SINE Alu 1 310 -2 2224 134 0 0 chr9 38576531 38576829 -79285798 - AluSx SINE Alu -12 300 3 429 193 0 0 chr9 38576834 38576917 -79285710 - L1ME2 LINE L1 -7 6157 6075 1978 120 47 97 chr9 38576920 38577019 -79285608 + THE1B LTR MaLR 1 103 -261 2351 94 0 3 chr9 38577019 38577316 -79285311 - AluSc SINE Alu -13 296 1 1978 120 47 97 chr9 38577316 38577382 -79285245 + THE1B LTR MaLR 103 171 -193 2219 89 3 33 chr9 38577382 38577685 -79284942 - AluY SINE Alu -17 294 1 1978 120 47 97 chr9 38577685 38577901 -79284726 + THE1B LTR MaLR 171 364 0 9911 81 78 34 chr9 38577901 38578331 -79284296 + THE1B-int LTR MaLR 1 411 -1169 2096 161 3 0 chr9 38578331 38578642 -79283985 - AluSx SINE Alu 0 312 1 9911 81 78 34 chr9 38578642 38578657 -79283970 + THE1B-int LTR MaLR 411 424 -1156 2161 125 10 0 chr9 38578657 38578953 -79283674 - AluSx SINE Alu -13 299 1 9911 81 78 34 chr9 38578953 38580020 -79282607 + THE1B-int LTR MaLR 424 1580 0 668 109 146 0 chr9 38580020 38580130 -79282497 + THE1B LTR MaLR 1 126 -238 2254 105 3 7 chr9 38580131 38580427 -79282200 - AluSx SINE Alu -7 305 11 2283 116 13 0 chr9 38580461 38580763 -79281864 - AluSx SINE Alu -6 306 1 3110 157 27 77 chr9 38580770 38581000 -79281627 - MER6 DNA MER2_type -168 697 457 2095 111 27 3 chr9 38581000 38581297 -79281330 - AluSg SINE Alu -6 304 1 3110 157 27 77 chr9 38581297 38581401 -79281226 - MER6 DNA MER2_type -408 457 349 2314 78 41 0 chr9 38581401 38581696 -79280931 - AluY SINE Alu -4 307 1 3110 157 27 77 chr9 38581696 38582053 -79280574 - MER6 DNA MER2_type -516 349 52 2034 137 0 10 chr9 38582053 38582352 -79280275 + AluJo SINE Alu 1 296 -16 3110 157 27 77 chr9 38582352 38582399 -79280228 - MER6 DNA MER2_type -813 52 4 2469 63 0 16 chr9 38582442 38582745 -79279882 - AluY SINE Alu -13 298 1 244 154 46 0 chr9 38582748 38582820 -79279807 - L1M LINE L1 -778 5384 5306 533 225 179 7 chr9 38583068 38583219 -79279408 - MER5B DNA MER1_type -1 177 1 2262 109 0 10 chr9 38583390 38583701 -79278926 + AluSg SINE Alu 1 308 -2 1101 200 55 65 chr9 38583978 38584288 -79278339 + MER58B DNA MER1_type 1 307 -34 727 130 19 0 chr9 38584300 38584408 -79278219 - AluJb SINE Alu -201 111 2 2218 104 7 7 chr9 38584668 38584966 -79277661 - AluSp SINE Alu -15 298 1 5505 46 0 25 chr9 38585024 38585154 -79277473 + L1PA5 LINE L1 5480 5612 -542 2514 63 0 3 chr9 38585154 38585453 -79277174 + AluY SINE Alu 1 298 -13 5505 46 0 25 chr9 38585453 38586012 -79276615 + L1PA5 LINE L1 5612 6152 -2 906 261 0 0 chr9 38586244 38586424 -79276203 + MER5A DNA MER1_type 4 183 -6 2136 116 7 10 chr9 38586523 38586657 -79275970 + AluSx SINE Alu 1 134 -178 2513 42 3 13 chr9 38586657 38586966 -79275661 + AluY SINE Alu 1 306 -5 2136 116 7 10 chr9 38586966 38587132 -79275495 + AluSx SINE Alu 134 300 -12 974 151 0 0 chr9 38587141 38587306 -79275321 + AluSg/x SINE Alu 144 308 0 457 69 0 0 chr9 38587311 38587369 -79275258 + Alu SINE Alu 2 59 -251 407 131 0 0 chr9 38588065 38588126 -79274501 - AluSc SINE Alu -15 294 234 2312 117 0 0 chr9 38588161 38588470 -79274157 - AluSg SINE Alu -1 309 1 1067 112 0 0 chr9 38588472 38588615 -79274012 - FRAM SINE Alu -16 160 18 2352 92 0 0 chr9 38588820 38589113 -79273514 + AluSc SINE Alu 1 293 -16 475 195 70 70 chr9 38589181 38589281 -79273346 + MER33 DNA MER1_type 1 103 -2482 2441 90 3 0 chr9 38589281 38589591 -79273036 - AluSp SINE Alu -2 311 1 475 195 70 70 chr9 38589591 38589618 -79273009 + MER33 DNA MER1_type 102 128 -196 1397 118 5 0 chr9 38589718 38589904 -79272723 + AluSp SINE Alu 112 298 -15 4179 92 4 0 chr9 38590006 38590558 -79272069 - MER41A LTR ERV1 0 554 1 2037 131 0 0 chr9 38590611 38590901 -79271726 - AluSx SINE Alu -22 290 1 1397 148 32 0 chr9 38590987 38591204 -79271423 + AluSg/x SINE Alu 71 294 -16 2186 119 6 6 chr9 38591206 38591517 -79271110 + AluSq SINE Alu 1 311 -2 2109 146 8 26 chr9 38591522 38591899 -79270728 - MER41B LTR ERV1 -136 499 130 2342 104 0 3 chr9 38591965 38592272 -79270355 - AluSg SINE Alu -4 306 1 343 90 124 22 chr9 38592273 38592362 -79270265 - L1M LINE L1 -2414 5394 5297 2359 56 0 14 chr9 38592366 38592675 -79269952 - AluY SINE Alu 0 305 1 2447 74 0 0 chr9 38592675 38592971 -79269656 - AluY SINE Alu -12 299 4 2035 208 73 40 chr9 38593140 38593659 -79268968 + MLT2B3 LTR ERVL 1 536 -18 985 124 0 96 chr9 38593661 38593839 -79268788 - AluSg/x SINE Alu -15 297 137 566 150 63 0 chr9 38593840 38593903 -79268724 + L1MD1 LINE L1 6107 6165 -77 1961 164 0 7 chr9 38593903 38594232 -79268395 - AluJb SINE Alu 0 312 1 566 150 63 0 chr9 38594232 38594295 -79268332 + L1MD1 LINE L1 6165 6241 -1 384 323 140 0 chr9 38594361 38594525 -79268102 - L1ME4a LINE L1 -94 6027 5841 389 184 149 0 chr9 38594527 38594614 -79268013 + MER53 DNA DNA 1 100 -89 2185 117 10 0 chr9 38594782 38595072 -79267555 - AluSg SINE Alu -11 299 7 1995 115 3 21 chr9 38595072 38595359 -79267268 - AluSx SINE Alu -30 282 1 1917 131 21 7 chr9 38595365 38595655 -79266972 - AluSx SINE Alu -18 294 1 25 31 0 0 chr9 38595776 38595808 -79266819 + AT_rich Low_complexity Low_complexity 1 32 0 2419 89 3 0 chr9 38595817 38596119 -79266508 + AluSp SINE Alu 1 303 -10 861 210 0 25 chr9 38596119 38596276 -79266351 - FRAM SINE Alu -27 149 1 269 234 109 34 chr9 38596276 38596423 -79266204 + MIR SINE MIR 103 261 -1 1242 176 38 86 chr9 38596493 38596806 -79265821 - AluJo SINE Alu -3 299 2 2388 78 0 33 chr9 38596810 38597116 -79265511 - AluY SINE Alu -15 296 1 2254 116 3 3 chr9 38597120 38597422 -79265205 - AluSx SINE Alu -10 302 1 288 259 111 28 chr9 38598265 38598373 -79264254 + L2 LINE L2 3197 3313 0 2067 114 11 4 chr9 38598515 38598828 -79263799 + AluSx SINE Alu 1 315 0 2146 109 41 0 chr9 38598851 38599144 -79263483 + AluSg SINE Alu 1 305 -5 2121 99 14 0 chr9 38599186 38599468 -79263159 - AluSp SINE Alu -14 299 14 6621 120 17 10 chr9 38599477 38600103 -79262524 + Tigger1 DNA MER2_type 218 857 -1561 2307 75 3 36 chr9 38600103 38600411 -79262216 + AluSp SINE Alu 1 298 -15 6621 120 17 10 chr9 38600411 38600823 -79261804 + Tigger1 DNA MER2_type 857 1264 -1154 824 230 0 0 chr9 38600824 38600996 -79261631 - FRAM SINE Alu 0 169 1 5911 122 24 14 chr9 38600996 38601336 -79261291 + Tigger1 DNA MER2_type 1248 1583 -835 2520 67 0 3 chr9 38601336 38601636 -79260991 + AluY SINE Alu 1 299 -12 5911 122 24 14 chr9 38601636 38602239 -79260388 + Tigger1 DNA MER2_type 1583 2200 -218 369 145 0 0 chr9 38602239 38602301 -79260326 + MER57A LTR ERV1 1 62 -341 514 101 0 22 chr9 38602316 38602405 -79260222 + (TTCCC)n Simple_repeat Simple_repeat 3 89 0 1985 129 6 32 chr9 38602422 38602733 -79259894 - AluSx SINE Alu -9 303 1 1370 186 11 74 chr9 38602733 38603099 -79259528 + MER57A LTR ERV1 54 396 -7 1323 80 23 6 chr9 38603100 38603275 -79259352 + AluJo SINE Alu 1 178 -134 232 252 210 28 chr9 38603275 38603489 -79259138 - Charlie2 DNA MER1_type -2583 279 27 29 28 0 0 chr9 38603640 38603676 -79258951 + GC_rich Low_complexity Low_complexity 1 36 0 381 322 42 0 chr9 38603923 38604066 -79258561 + MIR SINE MIR 29 177 -85 2413 76 0 3 chr9 38604330 38604632 -79257995 - AluSq SINE Alu -12 301 1 2049 106 0 64 chr9 38605128 38605457 -79257170 + AluSx SINE Alu 1 308 -4 2368 87 7 3 chr9 38605680 38605980 -79256647 + AluSg1 SINE Alu 1 301 -8 200 194 0 0 chr9 38606408 38606444 -79256183 + GA-rich Low_complexity Low_complexity 4 39 0 2206 113 0 3 chr9 38607356 38607657 -79254970 - AluSx SINE Alu -12 300 1 510 57 14 14 chr9 38608058 38608128 -79254499 + Alu SINE Alu 2 71 -247 392 200 23 2 chr9 38609073 38609170 -79253457 + MIR SINE MIR 39 136 -72 43 35 0 0 chr9 38609510 38609567 -79253060 + GC_rich Low_complexity Low_complexity 1 57 0 252 137 0 0 chr9 38609616 38609667 -79252960 + (CGG)n Simple_repeat Simple_repeat 3 53 0 351 232 23 28 chr9 38609691 38609868 -79252759 + (CGG)n Simple_repeat Simple_repeat 3 178 0 278 240 53 13 chr9 38610959 38611034 -79251593 - L2 LINE L2 -52 3261 3184 439 331 159 33 chr9 38611662 38611881 -79250746 - L2 LINE L2 -438 2876 2686 2086 148 79 57 chr9 38611881 38611936 -79250691 + MSTC LTR MaLR 1 53 -375 2348 78 0 0 chr9 38611936 38612250 -79250377 + AluSx SINE Alu 1 314 0 2086 148 79 57 chr9 38612250 38612612 -79250015 + MSTC LTR MaLR 53 428 0 439 331 159 33 chr9 38612612 38612812 -79249815 - L2 LINE L2 -628 2686 2404 2391 67 3 0 chr9 38613039 38613353 -79249274 + AluSp SINE Alu 1 315 0 367 110 22 88 chr9 38613353 38613444 -79249183 - L1MB4 LINE L1 -8 6172 6088 1172 117 0 53 chr9 38613444 38613632 -79248995 + AluSg/x SINE Alu 130 307 -2 1469 147 42 25 chr9 38613635 38613921 -79248706 - L1MB4 LINE L1 -77 6103 5813 2041 144 0 22 chr9 38613937 38614257 -79248370 - AluSp SINE Alu 0 313 1 1419 139 19 56 chr9 38614260 38614527 -79248100 - L1MB4 LINE L1 -512 5668 5412 2389 42 0 14 chr9 38614656 38614940 -79247687 + AluY SINE Alu 2 281 -30 226 0 0 0 chr9 38614940 38614965 -79247662 + (GAAAA)n Simple_repeat Simple_repeat 1 150 0 257 182 0 0 chr9 38615372 38615416 -79247211 - L1ME LINE L1 -460 5661 5618 25 51 0 0 chr9 38615453 38615492 -79247135 + AT_rich Low_complexity Low_complexity 1 39 0 1935 143 7 0 chr9 38615665 38615966 -79246661 + AluSx SINE Alu 1 303 -9 320 0 25 0 chr9 38616376 38616416 -79246211 + (TG)n Simple_repeat Simple_repeat 2 42 0 758 261 38 11 chr9 38616580 38616841 -79245786 + L1MC5 LINE L1 6961 7228 -733 403 317 43 26 chr9 38616860 38617090 -79245537 + L2 LINE L2 1782 2015 -1299 858 210 88 93 chr9 38617098 38617417 -79245210 - MLT1H1 LTR MaLR -4 551 233 4598 101 39 49 chr9 38617417 38618191 -79244436 + MER4E LTR ERV1 1 766 0 858 210 88 93 chr9 38618191 38618267 -79244360 - MLT1H1 LTR MaLR -322 233 158 1943 89 33 36 chr9 38618403 38618564 -79244063 - AluY SINE Alu -8 303 142 2329 78 3 0 chr9 38618564 38618860 -79243767 - AluSp SINE Alu -16 297 1 1943 89 33 36 chr9 38618860 38619002 -79243625 - AluY SINE Alu -169 142 1 802 159 0 29 chr9 38619050 38619188 -79243439 - AluJo SINE Alu -177 135 2 1973 90 61 0 chr9 38619217 38619495 -79243132 + AluSp SINE Alu 1 295 -18 1991 143 0 0 chr9 38619858 38620165 -79242462 + AluSx SINE Alu 1 307 -5 500 315 153 18 chr9 38620172 38620505 -79242122 - MLT1K LTR MaLR -74 514 137 2133 84 7 13 chr9 38620571 38620870 -79241757 - AluSx SINE Alu -15 297 1 2128 103 3 7 chr9 38620877 38621177 -79241450 - AluSx SINE Alu -12 300 2 256 254 18 91 chr9 38621214 38621324 -79241303 + L2 LINE L2 3152 3253 -19 2320 174 28 13 chr9 38622086 38622546 -79240081 - MLT1C LTR MaLR 0 467 1 400 238 20 20 chr9 38622922 38623023 -79239604 + MIR SINE MIR 102 202 -60 206 78 59 20 chr9 38623027 38623078 -79239549 + (TA)n Simple_repeat Simple_repeat 2 54 0 2223 108 0 0 chr9 38623226 38623532 -79239095 + AluSx SINE Alu 1 306 -6 1661 148 3 18 chr9 38624082 38624228 -79238399 - AluSx SINE Alu -32 280 138 2313 67 3 0 chr9 38624228 38624525 -79238102 - AluY SINE Alu -12 299 2 1661 148 3 18 chr9 38624525 38624662 -79237965 - AluSx SINE Alu -174 138 1 1186 225 20 49 chr9 38624825 38624911 -79237716 - L1ME3 LINE L1 -38 6124 6037 2236 82 0 38 chr9 38624911 38625229 -79237398 + AluSp SINE Alu 1 306 -7 1186 225 20 49 chr9 38625229 38625591 -79237036 - L1ME3 LINE L1 -125 6037 5514 923 184 0 0 chr9 38625593 38625751 -79236876 + FRAM SINE Alu 1 158 -18 371 197 0 0 chr9 38625752 38625823 -79236804 - L1ME3 LINE L1 -639 5525 5455 2321 82 3 0 chr9 38626777 38627080 -79235547 - AluSp SINE Alu -9 304 1 2134 92 3 32 chr9 38627144 38627458 -79235169 - AluSx SINE Alu -7 305 1 235 305 122 23 chr9 38627640 38627771 -79234856 + MIR3 SINE MIR 3 146 -62 244 293 181 0 chr9 38627796 38627912 -79234715 - MIR SINE MIR -56 206 70 211 292 28 14 chr9 38627974 38628046 -79234581 - L2 LINE L2 0 3313 3241 2196 84 7 7 chr9 38628119 38628417 -79234210 + AluSx SINE Alu 2 299 -13 1898 146 7 0 chr9 38628450 38628745 -79233882 - AluY SINE Alu -14 297 1 2369 52 16 0 chr9 38629040 38629345 -79233282 - AluY SINE Alu -1 310 1 2189 103 0 6 chr9 38629364 38629676 -79232951 - AluSx SINE Alu -1 311 2 216 152 0 0 chr9 38630012 38630045 -79232582 - MER5B DNA MER1_type -3 175 143 1076 201 92 22 chr9 38630078 38630351 -79232276 + L1ME3 LINE L1 5804 6095 -67 284 332 36 67 chr9 38630930 38631123 -79231504 + L3 LINE CR1 1156 1342 -235 578 135 22 0 chr9 38631144 38631260 -79231367 + AluSg/x SINE Alu 189 306 0 180 260 55 14 chr9 38631682 38631755 -79230872 - MIR SINE MIR -48 214 139 2015 116 13 3 chr9 38631888 38632190 -79230437 - AluSg SINE Alu -5 305 1 335 270 11 34 chr9 38632210 38632299 -79230328 + L2 LINE L2 3186 3272 0 1865 133 7 0 chr9 38632403 38632696 -79229931 - AluSx SINE Alu -17 295 1 255 310 14 0 chr9 38632884 38632955 -79229672 + CT-rich Low_complexity Low_complexity 1 72 0 188 317 0 0 chr9 38633007 38633048 -79229579 - L2 LINE L2 -91 3181 3141 520 218 68 38 chr9 38633350 38633483 -79229144 - MIR3 SINE MIR -7 201 65 2259 99 0 0 chr9 38633546 38633848 -79228779 - AluSc SINE Alu -7 302 1 610 119 8 10 chr9 38634014 38634275 -79228352 + AluSx SINE Alu 1 309 -3 2294 79 3 13 chr9 38634285 38634589 -79228038 + AluSp SINE Alu 1 301 -12 353 274 32 11 chr9 38634589 38634677 -79227950 + L1MC4 LINE L1 6612 6704 -1338 352 220 44 55 chr9 38634598 38634689 -79227938 - L1MC4 LINE L1 -1339 6703 6614 * 338 86 76 19 chr9 38634690 38634795 -79227832 + (TA)n Simple_repeat Simple_repeat 1 111 0 355 228 71 86 chr9 38634799 38635028 -79227599 + L1MC4 LINE L1 1948 6989 -1333 1815 156 0 7 chr9 38635028 38635323 -79227304 + AluJb SINE Alu 1 293 -19 241 178 0 0 chr9 38635356 38635401 -79227226 - MER113 DNA MER1_type? -473 48 4 1180 147 6 0 chr9 38635455 38635625 -79227002 + FAM SINE Alu 1 171 -4 2384 62 3 16 chr9 38635858 38636165 -79226462 - AluSp SINE Alu -9 304 2 319 194 15 0 chr9 38636266 38636342 -79226285 + MIR SINE MIR 45 121 -87 279 288 0 0 chr9 38636392 38636465 -79226162 + GA-rich Low_complexity Low_complexity 1 73 0 479 331 36 57 chr9 38636743 38636991 -79225636 + L2 LINE L2 3028 3270 -2 255 347 54 20 chr9 38637023 38637170 -79225457 + L3 LINE CR1 1178 1329 -248 1158 148 72 10 chr9 38637173 38637382 -79225245 + AluSg/x SINE Alu 80 301 -9 325 317 42 33 chr9 38637396 38637516 -79225111 + MER91A DNA MER1_type 69 189 -7 * 426 270 68 7 chr9 38637511 38637659 -79224968 + MIR SINE MIR 35 191 -71 1268 151 0 148 chr9 38637666 38637788 -79224839 + AluJo SINE Alu 1 139 -173 2447 47 0 0 chr9 38637788 38638088 -79224539 + AluY SINE Alu 1 300 -11 1268 151 0 148 chr9 38638088 38638120 -79224507 + AluJo SINE Alu 139 174 -138 1542 173 39 3 chr9 38638120 38638403 -79224224 - AluJb SINE Alu -19 293 1 2148 108 0 0 chr9 38638407 38638702 -79223925 - AluSx SINE Alu -17 295 1 1268 151 0 148 chr9 38638702 38638873 -79223754 + AluJo SINE Alu 177 283 -29 2158 78 0 3 chr9 38638957 38639271 -79223356 - AluSp SINE Alu 0 313 1 206 204 0 20 chr9 38639577 38639626 -79223001 + MIR3 SINE MIR 150 197 -11 2400 67 0 6 chr9 38639880 38640195 -79222432 - AluSp SINE Alu 0 313 1 836 179 0 73 chr9 38640198 38640377 -79222250 - AluJo/FRAM SINE Alu 0 302 137 1320 123 27 69 chr9 38640380 38640640 -79221987 - AluSx SINE Alu -2 310 62 2161 98 16 0 chr9 38640654 38640959 -79221668 - AluSg SINE Alu 0 310 1 873 114 91 0 chr9 38640959 38641091 -79221536 - AluSq/x SINE Alu -169 144 1 2083 81 0 42 chr9 38641244 38641552 -79221075 + AluSc SINE Alu 1 295 -14 270 0 0 0 chr9 38641681 38641711 -79220916 + (CA)n Simple_repeat Simple_repeat 1 30 0 327 130 0 0 chr9 38641816 38641870 -79220757 + (CCCCCT)n Simple_repeat Simple_repeat 6 59 0 1596 160 29 4 chr9 38641870 38642151 -79220476 - AluSx SINE Alu -10 302 15 979 103 34 0 chr9 38642184 38642361 -79220266 - AluSg/x SINE Alu 0 313 132 2129 114 0 0 chr9 38642361 38642658 -79219969 - AluSx SINE Alu -9 303 7 264 268 202 16 chr9 38642688 38642871 -79219756 + MER102b DNA MER1_type 98 314 -27 563 240 48 92 chr9 38643567 38643730 -79218897 + L1MA10 LINE L1 5959 6128 -201 1843 149 0 42 chr9 38643730 38643877 -79218750 + AluJb SINE Alu 1 130 -172 1765 126 49 14 chr9 38643877 38644012 -79218615 + AluSx SINE Alu 1 130 -182 2240 103 0 0 chr9 38644012 38644314 -79218313 + AluSc SINE Alu 1 302 -7 1765 126 49 14 chr9 38644314 38644463 -79218164 + AluSx SINE Alu 130 295 -17 1843 149 0 42 chr9 38644463 38644624 -79218003 + AluJb SINE Alu 130 296 -6 563 240 48 92 chr9 38644624 38644676 -79217951 + L1MA10 LINE L1 6128 6324 -5 868 228 117 60 chr9 38644696 38644885 -79217742 + Charlie7 DNA MER1_type 1807 1984 -628 2264 81 0 23 chr9 38644885 38645195 -79217432 - AluY SINE Alu -8 303 1 2116 118 0 16 chr9 38645197 38645373 -79217254 - AluSx SINE Alu -3 309 139 2291 78 3 10 chr9 38645373 38645680 -79216947 - AluSq SINE Alu -8 305 1 2116 118 0 16 chr9 38645680 38645817 -79216810 - AluSx SINE Alu -173 139 1 868 228 117 60 chr9 38645817 38646059 -79216568 + Charlie7 DNA MER1_type 1984 2266 -346 1200 147 0 0 chr9 38646077 38646261 -79216366 + AluSg/x SINE Alu 114 297 -13 38 75 0 0 chr9 38646384 38646464 -79216163 + AT_rich Low_complexity Low_complexity 1 80 0 2095 95 0 27 chr9 38646479 38646815 -79215812 - AluSp SINE Alu 0 328 1 1940 84 29 4 chr9 38646819 38647144 -79215483 - AluSc SINE Alu 0 332 1 545 236 150 7 chr9 38647146 38647286 -79215341 - AluJo SINE Alu -6 296 137 1054 176 0 60 chr9 38647340 38647573 -79215054 - AluJo SINE Alu -92 220 2 269 302 0 0 chr9 38648007 38648070 -79214557 + L2 LINE L2 3169 3231 -41 284 248 128 9 chr9 38648145 38648254 -79214373 + LTR67 LTR ERVL 436 557 0 2248 74 0 14 chr9 38648309 38648605 -79214022 - AluSq SINE Alu -21 292 1 362 344 37 23 chr9 38648865 38649083 -79213544 + L1M4 LINE L1 2882 3102 -3044 774 135 0 57 chr9 38649222 38649363 -79213264 - AluJo SINE Alu -169 133 1 2459 68 3 0 chr9 38649377 38649687 -79212940 - AluSp SINE Alu -2 311 1 1740 143 11 0 chr9 38649689 38649969 -79212658 - AluJo SINE Alu -19 293 11 1552 128 8 56 chr9 38650272 38650538 -79212089 - AluSx SINE Alu -11 301 49 1830 117 19 49 chr9 38650744 38650880 -79211747 + AluSx SINE Alu 1 139 -173 2295 103 0 0 chr9 38650880 38651191 -79211436 + AluSx SINE Alu 1 311 -1 1830 117 19 49 chr9 38651191 38651361 -79211266 + AluSx SINE Alu 139 298 -14 1068 137 6 0 chr9 38651361 38651536 -79211091 + AluSg/x SINE Alu 134 309 -3 2012 86 14 4 chr9 38651541 38651847 -79210780 + AluSc SINE Alu 1 309 0 1736 139 0 14 chr9 38652879 38653166 -79209461 + AluSx SINE Alu 15 297 -15 1037 167 4 66 chr9 38653189 38653282 -79209345 - AluJo SINE Alu -99 213 116 2212 92 7 3 chr9 38653282 38653588 -79209039 - AluSp SINE Alu -6 307 1 1037 167 4 66 chr9 38653588 38653721 -79208906 - AluJo SINE Alu -196 116 1 242 221 86 71 chr9 38653786 38653926 -79208701 - L1 LINE L1 -1093 5053 4912 201 258 112 22 chr9 38654384 38654473 -79208154 + L2 LINE L2 611 707 -2607 579 254 49 32 chr9 38654477 38654490 -79208137 + L2 LINE L2 3126 3137 -176 2055 96 0 17 chr9 38654490 38654644 -79207983 - AluSg SINE Alu -24 286 131 255 31 0 0 chr9 38654644 38654676 -79207951 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 2201 80 3 0 chr9 38654676 38654962 -79207665 - AluSq SINE Alu -26 287 1 2055 96 0 17 chr9 38654962 38655097 -79207530 - AluSg SINE Alu -177 133 1 579 254 49 32 chr9 38655097 38655268 -79207359 + L2 LINE L2 3137 3313 0 21 57 0 0 chr9 38655495 38655530 -79207097 + AT_rich Low_complexity Low_complexity 1 35 0 1884 120 65 0 chr9 38655671 38655963 -79206664 - AluY SINE Alu 0 311 1 2113 97 7 0 chr9 38655963 38656253 -79206374 - AluSq SINE Alu -21 292 1 22 0 0 0 chr9 38656260 38656282 -79206345 + AT_rich Low_complexity Low_complexity 1 22 0 239 175 0 0 chr9 38656284 38656324 -79206303 - MER57A LTR ERV1 -68 335 296 466 225 141 71 chr9 38656325 38656365 -79206262 - L1M4 LINE L1 -757 5389 5353 2175 97 0 3 chr9 38656365 38656663 -79205964 - AluSg SINE Alu -13 297 1 466 225 141 71 chr9 38656663 38656839 -79205788 - L1M4 LINE L1 -793 5353 5191 592 142 150 0 chr9 38656839 38656952 -79205675 - FLAM_A SINE Alu -3 130 1 466 225 141 71 chr9 38656952 38657182 -79205445 - L1M4 LINE L1 -955 5191 4911 266 227 0 0 chr9 38657540 38657584 -79205043 - L2 LINE L2 -511 2803 2760 2411 49 10 13 chr9 38657597 38657901 -79204726 - AluY SINE Alu -6 305 3 667 227 57 74 chr9 38657915 38658144 -79204483 - L2 LINE L2 -535 2779 2555 330 191 79 95 chr9 38658183 38658309 -79204318 - L1ME3 LINE L1 -2 6160 6037 817 244 101 5 chr9 38658345 38658562 -79204065 - L2 LINE L2 -775 2539 2302 2441 54 0 0 chr9 38658611 38658908 -79203719 - AluY SINE Alu -14 297 1 24 0 0 0 chr9 38659184 38659208 -79203419 + AT_rich Low_complexity Low_complexity 1 24 0 2571 39 0 0 chr9 38659631 38659940 -79202687 - AluY SINE Alu -2 309 1 2156 83 0 49 chr9 38659942 38660268 -79202359 - AluY SINE Alu -1 310 1 1493 204 7 3 chr9 38660355 38660654 -79201973 - AluJo SINE Alu -12 300 1 374 287 25 25 chr9 38660726 38660848 -79201779 - L3 LINE CR1 -111 1466 1345 2201 116 3 0 chr9 38660931 38661242 -79201385 - AluSx SINE Alu 0 312 1 1690 170 3 7 chr9 38661290 38661579 -79201048 + AluJo SINE Alu 1 288 -24 758 206 55 47 chr9 38661596 38661694 -79200933 - Charlie2 DNA MER1_type -677 2185 2089 1762 159 3 7 chr9 38661694 38661995 -79200632 + AluJb SINE Alu 1 300 -12 758 206 55 47 chr9 38661995 38662149 -79200478 - Charlie2 DNA MER1_type -773 2089 1931 2048 66 48 4 chr9 38662490 38662784 -79199843 - AluY SINE Alu 0 306 1 2077 113 0 0 chr9 38662949 38663241 -79199386 - AluSg SINE Alu -9 301 10 1062 56 126 0 chr9 38663256 38663399 -79199228 - AluSp SINE Alu -19 294 134 1728 114 50 27 chr9 38663399 38663698 -79198929 - AluSg SINE Alu 0 310 5 1940 88 34 44 chr9 38663709 38664005 -79198622 - AluSp SINE Alu -20 293 1 2208 91 3 0 chr9 38664018 38664314 -79198313 - AluSp SINE Alu -16 297 1 299 185 49 25 chr9 38664422 38664503 -79198124 - L1MC4 LINE L1 0 8042 7960 312 337 143 10 chr9 38664511 38664707 -79197920 - L3 LINE CR1 -459 1118 897 2221 65 7 3 chr9 38664790 38665082 -79197545 - AluY SINE Alu -18 293 1 2413 80 3 0 chr9 38665556 38665855 -79196772 - AluY SINE Alu -11 300 1 1666 192 32 21 chr9 38665874 38666213 -79196414 - MLT1C LTR MaLR 0 467 125 1628 168 0 53 chr9 38666444 38666748 -79195879 + AluJo SINE Alu 16 303 -9 1970 151 0 3 chr9 38666926 38667224 -79195403 + AluJb SINE Alu 1 297 -15 1713 150 42 24 chr9 38667284 38667571 -79195056 + AluJo SINE Alu 1 292 -20 734 179 0 22 chr9 38667649 38667783 -79194844 - AluJo SINE Alu -177 135 5 2219 115 3 10 chr9 38667799 38668112 -79194515 - AluSx SINE Alu -1 311 1 1016 181 63 82 chr9 38668431 38668734 -79193893 - L1ME2 LINE L1 -9 6155 5859 227 236 55 91 chr9 38668758 38668868 -79193759 - L1ME2 LINE L1 -1934 5874 5769 2048 180 20 8 chr9 38668884 38669239 -79193388 + MLT1A1 LTR MaLR 7 365 0 425 179 45 134 chr9 38669239 38669305 -79193322 - L1ME2 LINE L1 -2070 5738 5668 267 31 0 0 chr9 38669305 38669337 -79193290 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2099 63 71 4 chr9 38669339 38669607 -79193020 - AluSg SINE Alu -24 286 1 425 179 45 134 chr9 38669607 38669716 -79192911 - L1ME2 LINE L1 -2141 5667 5576 1561 127 0 0 chr9 38670560 38670780 -79191847 - AluSx SINE Alu -10 302 83 2425 62 0 3 chr9 38670781 38671071 -79191556 - AluY SINE Alu -22 289 1 596 160 0 0 chr9 38671072 38671166 -79191461 - AluSx SINE Alu -217 95 2 1290 127 6 6 chr9 38671241 38671422 -79191205 - AluJb SINE Alu -11 301 121 2019 156 0 0 chr9 38671444 38671751 -79190876 - AluSx SINE Alu -5 307 1 2275 42 0 8 chr9 38671928 38672192 -79190435 - AluY SINE Alu -49 262 1 2420 96 3 0 chr9 38672209 38672521 -79190106 - AluSp SINE Alu 0 313 1 676 197 7 22 chr9 38672634 38672771 -79189856 - AluJo SINE Alu -176 136 2 2405 89 0 19 chr9 38674370 38674685 -79187942 + AluSx SINE Alu 1 309 -3 245 278 90 38 chr9 38674862 38674995 -79187632 - L2 LINE L2 0 3272 3133 2042 100 52 0 chr9 38675442 38675737 -79186890 - AluSx SINE Alu 0 309 1 2373 74 0 7 chr9 38675745 38676042 -79186585 - AluY SINE Alu -16 295 1 2313 217 39 25 chr9 38676240 38676852 -79185775 - L1MC4 LINE L1 0 8042 7422 4137 139 6 3 chr9 38676916 38677564 -79185063 - L1MB2 LINE L1 -2 6169 5520 2335 104 10 0 chr9 38677568 38677866 -79184761 + AluSg SINE Alu 1 301 -9 21 0 0 0 chr9 38677918 38677939 -79184688 + AT_rich Low_complexity Low_complexity 1 21 0 2395 90 3 0 chr9 38678088 38678387 -79184240 - AluSp SINE Alu -13 300 1 240 206 110 0 chr9 38678437 38678510 -79184117 - MIR SINE MIR -73 135 55 238 311 37 75 chr9 38678719 38678880 -79183747 - MER5A DNA MER1_type -29 160 6 1769 160 0 7 chr9 38678959 38679234 -79183393 - AluJo SINE Alu -11 301 29 2244 99 3 0 chr9 38679482 38679795 -79182832 - AluSp SINE Alu 0 316 3 1374 96 0 92 chr9 38679797 38680026 -79182601 - AluSx SINE Alu -3 307 100 852 78 0 0 chr9 38680079 38680182 -79182445 - AluSx SINE Alu -210 103 1 2106 132 3 0 chr9 38680183 38680472 -79182155 - AluSx SINE Alu -22 290 1 381 131 0 0 chr9 38680476 38680537 -79182090 - AluSp/q SINE Alu -1 302 242 1112 140 18 12 chr9 38680537 38680708 -79181919 - AluSx SINE Alu -130 182 11 1959 145 0 10 chr9 38680748 38681038 -79181589 - AluSx SINE Alu -22 290 4 249 138 0 46 chr9 38681319 38681384 -79181243 + (TTTC)n Simple_repeat Simple_repeat 2 63 0 684 170 0 0 chr9 38681395 38681501 -79181126 + AluSg/x SINE Alu 194 299 -11 601 194 29 0 chr9 38681787 38681962 -79180665 + (TA)n Simple_repeat Simple_repeat 1 180 0 552 191 35 0 chr9 38681974 38682147 -79180480 + (TA)n Simple_repeat Simple_repeat 1 179 0 256 225 100 0 chr9 38682160 38682240 -79180387 + L1MC4 LINE L1 6614 6701 -1341 280 92 53 13 chr9 38682252 38682328 -79180299 + (TA)n Simple_repeat Simple_repeat 2 80 0 2247 101 0 0 chr9 38682328 38682614 -79180013 - AluSx SINE Alu -26 286 1 379 283 109 33 chr9 38682843 38683027 -79179600 + MIR3 SINE MIR 2 199 -9 562 202 142 87 chr9 38683252 38683403 -79179224 + L1ME3A LINE L1 5904 6045 -125 1783 130 20 68 chr9 38683403 38683528 -79179099 + MER44D DNA MER2_type 1 130 -2361 2640 49 7 0 chr9 38683528 38683833 -79178794 + AluY SINE Alu 1 307 -4 1783 130 20 68 chr9 38683833 38684061 -79178566 + MER44D DNA MER2_type 130 607 -2 562 202 142 87 chr9 38684061 38684112 -79178515 + L1ME3A LINE L1 6045 6092 -78 2488 70 0 3 chr9 38684112 38684412 -79178215 - AluSp SINE Alu -14 299 1 562 202 142 87 chr9 38684412 38684461 -79178166 + L1ME3A LINE L1 6092 6170 0 1003 153 110 3 chr9 38684620 38684828 -79177799 + L1MB7 LINE L1 5953 6183 0 1870 156 16 29 chr9 38684967 38685281 -79177346 - AluJb SINE Alu -2 310 1 290 343 15 7 chr9 38685506 38685643 -79176984 - L2 LINE L2 -219 3053 2916 1345 155 49 9 chr9 38686454 38686680 -79175947 + MER46A DNA MER2_type 2 236 0 335 234 75 11 chr9 38687002 38687096 -79175531 + MER5B DNA MER1_type 7 106 -72 636 179 55 0 chr9 38687123 38687268 -79175359 + MIR SINE MIR 70 222 -40 1980 132 4 0 chr9 38687282 38687600 -79175027 - AluSg SINE Alu 0 319 1 2183 133 3 0 chr9 38687615 38687923 -79174704 - AluSx SINE Alu -2 310 2 1960 102 15 4 chr9 38687928 38688194 -79174433 - AluSx SINE Alu -25 287 19 311 237 151 69 chr9 38688206 38688451 -79174176 - L1M4 LINE L1 -2391 3755 3491 569 263 74 71 chr9 38688461 38688805 -79173822 + L2 LINE L2 2699 3045 -268 218 233 0 0 chr9 38688809 38688852 -79173775 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 1138 261 63 55 chr9 38688880 38689628 -79172999 - L2 LINE L2 -15 3298 2535 2117 115 7 0 chr9 38689629 38689924 -79172703 - AluSx SINE Alu -15 297 1 6267 44 12 16 chr9 38689960 38690715 -79171912 - SVA Other Other 0 1386 635 516 122 5 113 chr9 38690788 38691009 -79171618 - SVA Other Other -555 831 635 2759 88 38 90 chr9 38691038 38691538 -79171089 - SVA Other Other -520 866 393 417 227 31 10 chr9 38691703 38691800 -79170827 - L1ME1 LINE L1 -22 6144 6046 276 194 0 0 chr9 38691801 38691863 -79170764 - L2 LINE L2 -771 2543 2482 2269 113 3 0 chr9 38691917 38692218 -79170409 - AluSx SINE Alu -10 302 1 21 0 0 0 chr9 38692308 38692329 -79170298 + AT_rich Low_complexity Low_complexity 1 21 0 1234 236 137 34 chr9 38692354 38692769 -79169858 - L1MC4a LINE L1 -1865 5943 5486 1981 147 43 0 chr9 38692850 38693149 -79169478 - AluJo SINE Alu 0 312 1 1142 220 155 16 chr9 38693295 38693373 -79169254 - Charlie7 DNA MER1_type -1831 781 715 1745 180 14 10 chr9 38693373 38693668 -79168959 + AluJo SINE Alu 1 296 -16 2095 116 37 0 chr9 38693668 38693962 -79168665 + AluSx SINE Alu 5 309 -3 1142 220 155 16 chr9 38693962 38694309 -79168318 - Charlie7 DNA MER1_type -1896 716 296 385 174 51 61 chr9 38694344 38694442 -79168185 - Charlie7 DNA MER1_type -2429 183 87 2359 100 3 3 chr9 38694489 38694788 -79167839 - AluSx SINE Alu -13 299 1 698 247 12 6 chr9 38695542 38695708 -79166919 - MIR SINE MIR -95 167 1 184 316 0 41 chr9 38695930 38696028 -79166599 + MIR3 SINE MIR 114 207 -1 * 249 265 63 58 chr9 38696020 38696069 -79166558 - L3 LINE CR1 -752 825 778 2438 87 0 3 chr9 38696069 38696378 -79166249 - AluSg SINE Alu -2 308 1 249 265 63 58 chr9 38696378 38696517 -79166110 - L3 LINE CR1 -799 778 636 2265 114 0 19 chr9 38696518 38696834 -79165793 + AluSg SINE Alu 1 310 0 560 238 16 0 chr9 38696998 38697120 -79165507 - MIR SINE MIR -110 152 29 1000 218 38 0 chr9 38698556 38698767 -79163860 - MER20 DNA MER1_type 0 219 1 227 233 12 58 chr9 38698777 38698863 -79163764 + MIR SINE MIR 91 172 -90 427 252 9 9 chr9 38699497 38699608 -79163019 - MIR SINE MIR -6 256 146 1440 90 0 0 chr9 38699610 38699787 -79162840 - AluSg/x SINE Alu -9 301 125 531 258 0 8 chr9 38699787 38699911 -79162716 - MIR SINE MIR -111 151 29 253 267 27 0 chr9 38699917 38699992 -79162635 - MIR SINE MIR -133 129 53 330 267 23 0 chr9 38700512 38700598 -79162029 - MLT1C LTR MaLR 0 467 380 1869 117 94 0 chr9 38701178 38701443 -79161184 + AluSx SINE Alu 11 300 -12 4649 82 29 29 chr9 38701583 38702205 -79160422 + PABL_A LTR ERV1 1 625 -35 2396 93 3 3 chr9 38702205 38702516 -79160111 + AluSq SINE Alu 1 311 -2 4649 82 29 29 chr9 38702516 38702553 -79160074 + PABL_A LTR ERV1 624 660 0 324 0 0 0 chr9 38702583 38702619 -79160008 + (CA)n Simple_repeat Simple_repeat 2 37 0 2344 86 3 7 chr9 38703054 38703356 -79159271 - AluSp SINE Alu -12 301 1 2046 98 70 3 chr9 38703427 38703712 -79158915 - AluSq SINE Alu -9 304 1 2468 76 0 0 chr9 38703956 38704247 -79158380 - AluSc SINE Alu -18 291 1 2265 115 0 10 chr9 38704381 38704694 -79157933 - AluSg SINE Alu 0 310 1 2386 96 0 0 chr9 38705482 38705783 -79156844 - AluSx SINE Alu -11 301 1 198 0 0 0 chr9 38706281 38706303 -79156324 + (ATTG)n Simple_repeat Simple_repeat 3 24 0 1861 153 0 21 chr9 38706304 38706592 -79156035 - AluSx SINE Alu -30 282 1 2146 110 0 23 chr9 38706599 38706900 -79155727 - AluSx SINE Alu -9 303 10 2132 123 0 26 chr9 38706902 38707204 -79155423 - AluSx SINE Alu -18 294 1 22 0 0 0 chr9 38707211 38707233 -79155394 + AT_rich Low_complexity Low_complexity 1 22 0 850 216 6 6 chr9 38707233 38707395 -79155232 - AluJ SINE Alu -31 281 120 896 147 0 0 chr9 38707471 38707600 -79155027 - AluJ SINE Alu -183 129 1 1078 179 16 0 chr9 38707694 38707878 -79154749 - MER5A DNA MER1_type 0 189 3 311 181 291 16 chr9 38708981 38709108 -79153519 - MER5B DNA MER1_type 0 178 17 268 298 32 0 chr9 38709125 38709219 -79153408 + MIR SINE MIR 88 184 -78 5234 161 85 61 chr9 38709220 38710067 -79152560 - Charlie1a DNA MER1_type -1306 1455 630 2028 112 24 7 chr9 38710067 38710354 -79152273 + AluSx SINE Alu 1 292 -20 1662 100 5 0 chr9 38710356 38710566 -79152061 + AluSg SINE Alu 1 211 -99 5234 161 85 61 chr9 38710566 38710906 -79151721 - Charlie1a DNA MER1_type -2131 630 133 2122 135 0 0 chr9 38710906 38711202 -79151425 - AluSq SINE Alu -17 296 1 5234 161 85 61 chr9 38711202 38711336 -79151291 - Charlie1a DNA MER1_type -2628 133 4 2202 104 28 0 chr9 38711437 38711725 -79150902 - AluSg SINE Alu -14 296 1 611 247 156 68 chr9 38711803 38711860 -79150767 - MLT1H LTR MaLR -8 541 490 2396 72 7 13 chr9 38711860 38712166 -79150461 + AluSp SINE Alu 1 304 -9 611 247 156 68 chr9 38712166 38712367 -79150260 - MLT1H LTR MaLR -59 490 308 882 31 0 23 chr9 38712367 38712496 -79150131 + (TTTC)n Simple_repeat Simple_repeat 3 128 0 2127 80 15 0 chr9 38712496 38712770 -79149857 - AluY SINE Alu -33 278 1 611 247 156 68 chr9 38712770 38712894 -79149733 - MLT1H LTR MaLR -240 309 123 1250 168 74 4 chr9 38712966 38713222 -79149405 - Charlie1 DNA MER1_type -205 2556 2283 2249 109 3 0 chr9 38713921 38714223 -79148404 - AluSp SINE Alu -10 303 1 756 187 11 53 chr9 38714361 38714548 -79148079 - MIR SINE MIR -35 227 49 22 0 0 0 chr9 38715488 38715510 -79147117 + AT_rich Low_complexity Low_complexity 1 22 0 748 187 8 8 chr9 38715788 38715922 -79146705 - MLT1A2 LTR MaLR -2 363 230 970 153 43 139 chr9 38715939 38716072 -79146555 - MLT1A2 LTR MaLR -98 276 183 1700 181 0 20 chr9 38716072 38716376 -79146251 - AluJo SINE Alu -2 310 13 970 153 43 139 chr9 38716376 38716523 -79146104 - MLT1A2 LTR MaLR -191 183 23 371 319 101 44 chr9 38716565 38716863 -79145764 + L3 LINE CR1 982 1296 -281 275 310 60 17 chr9 38716957 38717073 -79145554 - MIR SINE MIR -58 150 30 2430 82 3 0 chr9 38717241 38717545 -79145082 - AluSp SINE Alu -8 305 1 2337 120 0 0 chr9 38718057 38718366 -79144261 - AluSx SINE Alu -2 310 2 2459 88 0 0 chr9 38718739 38719044 -79143583 + AluSq SINE Alu 1 305 -8 2605 69 0 0 chr9 38719291 38719597 -79143030 + AluY SINE Alu 1 306 -5 387 0 0 0 chr9 38719848 38719891 -79142736 + (TG)n Simple_repeat Simple_repeat 2 44 0 489 295 111 9 chr9 38770723 38770940 -79091687 + L2 LINE L2 3074 3312 -1 279 187 67 13 chr9 38771117 38771192 -79091435 + L2 LINE L2 3194 3272 0 2230 64 36 0 chr9 38771684 38771964 -79090663 - AluSq SINE Alu -22 291 2 661 138 8 8 chr9 38772077 38772200 -79090427 + CT-rich Low_complexity Low_complexity 4 126 0 289 225 28 0 chr9 38772210 38772281 -79090346 - MER39 LTR ERV1 -92 615 543 254 270 193 51 chr9 38772514 38772788 -79089839 - L2 LINE L2 -350 2964 2652 255 264 46 75 chr9 38773414 38773588 -79089039 - MER104 DNA Tc2 -1 179 11 1036 237 28 0 chr9 38774752 38775001 -79087626 + MIR SINE MIR 3 258 -4 240 290 118 0 chr9 38775015 38775108 -79087519 + MIR SINE MIR 45 148 -60 227 268 158 0 chr9 38776045 38776127 -79086500 - MIR SINE MIR -110 152 58 309 178 59 79 chr9 38776451 38776552 -79086075 + MIR SINE MIR 81 179 -83 374 296 30 39 chr9 38777197 38777400 -79085227 - LTR67 LTR ERVL 0 557 357 469 272 22 11 chr9 38778342 38778522 -79084105 + MIR SINE MIR 66 247 -15 254 267 209 0 chr9 38778738 38778843 -79083784 - MER5B DNA MER1_type 0 178 52 484 143 20 0 chr9 38778844 38778942 -79083685 + (TCTA)n Simple_repeat Simple_repeat 1 100 0 5738 68 0 1 chr9 38779507 38780227 -79082400 - L1PA7 LINE L1 -1 6153 5435 793 218 124 0 chr9 38781598 38781791 -79080836 - MIR SINE MIR -26 236 20 210 326 83 21 chr9 38782083 38782227 -79080400 + L2 LINE L2 2826 2978 -294 359 247 96 14 chr9 38782333 38782479 -79080148 - L1ME4a LINE L1 0 6121 5964 3197 35 0 30 chr9 38782586 38782966 -79079661 - L1PA3 LINE L1 0 6155 5786 2885 13 0 0 chr9 38782966 38783274 -79079353 - AluYb8 SINE Alu -10 308 1 3197 35 0 30 chr9 38783274 38783295 -79079332 - L1PA3 LINE L1 -369 5786 5766 1016 153 0 41 chr9 38783335 38783505 -79079122 - AluJb SINE Alu -14 298 136 183 42 0 0 chr9 38783918 38783942 -79078685 + (TGAA)n Simple_repeat Simple_repeat 4 27 0 708 317 40 38 chr9 38784638 38785275 -79077352 - L2 LINE L2 0 3313 2677 1876 161 6 6 chr9 38788740 38789051 -79073576 + AluJb SINE Alu 1 311 -1 795 274 5 0 chr9 38789190 38789398 -79073229 + MIR SINE MIR 43 251 -11 1448 191 98 56 chr9 38789412 38789820 -79072807 - MLT1C LTR MaLR -7 460 36 662 318 139 24 chr9 38789833 38790213 -79072414 - MLT1K LTR MaLR -158 430 7 447 293 57 25 chr9 38790253 38790533 -79072094 + L3 LINE CR1 1245 1533 -44 559 214 209 16 chr9 38790533 38790592 -79072035 + MER112 DNA MER1_type 1 47 -213 279 0 0 0 chr9 38790592 38790623 -79072004 + (CA)n Simple_repeat Simple_repeat 2 32 0 559 214 209 16 chr9 38790623 38790745 -79071882 + MER112 DNA MER1_type 47 217 -43 248 233 17 0 chr9 38790752 38790812 -79071815 + L3 LINE CR1 1516 1576 -1 360 0 0 0 chr9 38791377 38791417 -79071210 + (TG)n Simple_repeat Simple_repeat 1 40 0 232 235 0 0 chr9 38791471 38791522 -79071105 + (TGGA)n Simple_repeat Simple_repeat 3 53 0 1539 207 77 12 chr9 38791540 38791955 -79070672 - L2 LINE L2 0 3313 2872 577 182 9 0 chr9 38791955 38792065 -79070562 - LTR16A LTR ERVL -19 431 321 774 296 5 9 chr9 38792072 38792295 -79070332 - LTR16A LTR ERVL -93 357 136 1096 237 180 7 chr9 38792410 38792827 -79069800 - L2 LINE L2 -511 2803 2315 407 248 113 32 chr9 38794307 38794443 -79068184 + MIR SINE MIR 16 163 -66 180 0 0 0 chr9 38795159 38795179 -79067448 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 1869 153 25 3 chr9 38795187 38795469 -79067158 - AluJo SINE Alu -24 288 1 292 193 36 36 chr9 38795469 38795552 -79067075 - L1MA10 LINE L1 -42 6292 6210 303 206 14 41 chr9 38795904 38795977 -79066650 + L2 LINE L2 3242 3312 -1 2063 136 10 3 chr9 38796750 38797045 -79065582 + AluSx SINE Alu 1 297 -15 23 33 0 0 chr9 38797277 38797307 -79065320 + AT_rich Low_complexity Low_complexity 1 30 0 186 194 0 0 chr9 38799918 38799954 -79062673 - L2 LINE L2 0 3313 3278 1975 157 3 3 chr9 38800140 38800452 -79062175 - AluJo SINE Alu 0 312 1 4525 150 58 35 chr9 38800656 38800760 -79061867 - L1MB7 LINE L1 0 6184 6084 2156 135 0 3 chr9 38800760 38801064 -79061563 + AluSx SINE Alu 1 303 -9 4525 150 58 35 chr9 38801064 38801994 -79060633 - L1MB7 LINE L1 -100 6084 5127 2002 207 54 63 chr9 38802335 38802839 -79059788 - L1ME1 LINE L1 -5 6230 5730 2673 42 0 3 chr9 38802839 38803145 -79059482 - AluY SINE Alu -6 305 1 2002 207 54 63 chr9 38803145 38803230 -79059397 - L1ME1 LINE L1 -505 5730 5646 2218 119 0 3 chr9 38803253 38803563 -79059064 - AluSx SINE Alu -3 309 1 1951 232 48 9 chr9 38803663 38804210 -79058417 - L1ME1 LINE L1 -1742 4473 3906 302 326 100 3 chr9 38804198 38804508 -79058119 - L1ME1 LINE L1 -4130 2266 1927 * 1219 249 82 50 chr9 38804560 38805300 -79057327 - L1ME1 LINE L1 -4576 1820 1057 528 247 49 37 chr9 38805376 38805538 -79057089 - FAM SINE Alu -21 164 1 230 253 103 66 chr9 38805546 38805819 -79056808 - L1ME1 LINE L1 -5329 1067 785 4186 82 26 0 chr9 38806352 38806926 -79055701 - L1PB2 LINE L1 -2 6149 5561 286 221 0 133 chr9 38806989 38807102 -79055525 + MER112 DNA MER1_type 150 247 -13 481 377 9 16 chr9 38807141 38807457 -79055170 - L2 LINE L2 -788 2526 2213 2298 83 22 26 chr9 38807593 38807905 -79054722 - AluSx SINE Alu -1 311 1 219 257 178 30 chr9 38808207 38808308 -79054319 + L3 LINE CR1 1184 1299 -278 287 68 164 96 chr9 38808315 38808388 -79054239 - MLT2A1 LTR ERVL 0 453 367 27 81 0 0 chr9 38808389 38808451 -79054176 + AT_rich Low_complexity Low_complexity 1 62 0 2983 75 0 8 chr9 38808465 38808852 -79053775 - MLT2A1 LTR ERVL -60 384 1 215 313 62 52 chr9 38808879 38808975 -79053652 + L2 LINE L2 3168 3264 -8 305 307 73 36 chr9 38808999 38809136 -79053491 + L3 LINE CR1 1374 1515 -62 234 222 0 0 chr9 38809266 38809311 -79053316 - L2 LINE L2 -11 3261 3217 865 189 107 19 chr9 38809324 38809530 -79053097 + MER58A DNA MER1_type 1 224 0 551 236 92 23 chr9 38809558 38809732 -79052895 - MIR SINE MIR -57 205 20 208 264 14 135 chr9 38810450 38810598 -79052029 + MIR3 SINE MIR 15 144 -64 195 320 75 21 chr9 38812136 38812258 -79050369 + MIR SINE MIR 5 138 -70 6813 166 50 26 chr9 38812396 38813374 -79049253 + L1MC3 LINE L1 3824 4776 -1370 1528 228 26 91 chr9 38813374 38813914 -79048713 - MLT1D LTR MaLR 0 505 1 6813 166 50 26 chr9 38813914 38814527 -79048100 + L1MC3 LINE L1 4776 5372 -774 213 39 0 0 chr9 38814527 38814553 -79048074 + (CA)n Simple_repeat Simple_repeat 2 27 0 6813 166 50 26 chr9 38814553 38815044 -79047583 + L1MC3 LINE L1 5372 5283 -863 2290 129 0 0 chr9 38815044 38815355 -79047272 + AluSx SINE Alu 1 311 -1 6813 166 50 26 chr9 38815355 38815481 -79047146 + L1MC3 LINE L1 5282 5403 -743 672 160 0 0 chr9 38815522 38815628 -79046999 - AluSq/x SINE Alu -205 107 2 700 154 0 20 chr9 38815628 38815777 -79046850 + CT-rich Low_complexity Low_complexity 3 148 0 240 35 0 0 chr9 38815853 38815882 -79046745 + (TCC)n Simple_repeat Simple_repeat 2 30 0 707 200 0 0 chr9 38815883 38815998 -79046629 - FLAM_A SINE Alu -18 115 1 471 48 0 0 chr9 38816550 38816612 -79046015 + L1PA13 LINE L1 6099 6160 -3 2194 111 24 0 chr9 38816900 38817198 -79045429 + AluSq SINE Alu 1 305 -8 1914 150 3 7 chr9 38817236 38817536 -79045091 + AluJb SINE Alu 1 299 -13 24 0 0 0 chr9 38817673 38817697 -79044930 + AT_rich Low_complexity Low_complexity 1 24 0 306 0 0 0 chr9 38818471 38818505 -79044122 + (CA)n Simple_repeat Simple_repeat 2 35 0 671 328 61 16 chr9 38818527 38818954 -79043673 + L3 LINE CR1 1131 1576 -1 2009 101 78 31 chr9 38819644 38820002 -79042625 - THE1C LTR MaLR 0 375 1 10203 110 7 56 chr9 38820002 38821661 -79040966 - THE1C-int LTR MaLR 0 1580 3 1832 139 75 33 chr9 38821663 38822023 -79040604 - THE1C LTR MaLR 0 375 1 507 298 182 27 chr9 38822171 38822597 -79040030 + L2 LINE L2 1889 2420 -894 591 235 15 8 chr9 38822597 38822729 -79039898 - MER94 DNA DNA -1 133 1 507 298 182 27 chr9 38822729 38822852 -79039775 + L2 LINE L2 2420 2523 -791 345 246 98 16 chr9 38822828 38822950 -79039677 + L2 LINE L2 3136 3267 -5 * 430 228 165 32 chr9 38822981 38823139 -79039488 - MIR3 SINE MIR -7 201 23 354 98 0 0 chr9 38823208 38823259 -79039368 + (TG)n Simple_repeat Simple_repeat 2 52 0 1880 141 3 41 chr9 38823372 38823691 -79038936 - AluJo SINE Alu -5 307 1 191 351 69 23 chr9 38823989 38824120 -79038507 + MIR3 SINE MIR 66 202 -6 1266 142 83 0 chr9 38824165 38824383 -79038244 + MER46A DNA MER2_type 1 236 0 351 78 0 0 chr9 38825342 38825393 -79037234 + (TG)n Simple_repeat Simple_repeat 1 51 0 593 238 93 7 chr9 38825703 38825854 -79036773 - MER5B DNA MER1_type 0 178 15 2156 100 0 0 chr9 38826459 38826750 -79035877 - AluSg SINE Alu -19 291 1 3573 152 2 5 chr9 38826759 38827331 -79035296 - L1PA16 LINE L1 -16 6150 5581 383 301 87 33 chr9 38827586 38827769 -79034858 - MLT1L LTR MaLR -114 501 309 2157 126 32 59 chr9 38827774 38827983 -79034644 - THE1B LTR MaLR 0 364 168 1991 107 35 3 chr9 38827983 38828272 -79034355 + AluSq SINE Alu 1 298 -15 2157 126 32 59 chr9 38828272 38828436 -79034191 - THE1B LTR MaLR -196 168 1 183 321 0 0 chr9 38828648 38828704 -79033923 + MIR SINE MIR 56 111 -151 434 272 0 0 chr9 38828797 38828911 -79033716 - MER103 DNA DNA -51 115 2 618 291 52 14 chr9 38829176 38829389 -79033238 + L2 LINE L2 3090 3310 -3 201 39 0 0 chr9 38829702 38829728 -79032899 + (GA)n Simple_repeat Simple_repeat 2 27 0 1914 121 3 7 chr9 38829873 38830181 -79032446 + AluSq SINE Alu 2 308 0 193 259 56 83 chr9 38831061 38831169 -79031458 - MIR SINE MIR -66 196 92 2249 111 0 0 chr9 38831297 38831603 -79031024 + AluSx SINE Alu 1 306 -6 420 310 47 23 chr9 38831614 38831785 -79030842 - MER5B DNA MER1_type -3 175 1 284 274 26 71 chr9 38831831 38831944 -79030683 + MIR3 SINE MIR 88 195 -13 630 263 116 54 chr9 38832040 38832310 -79030317 + MLT1L LTR MaLR 5 305 -283 313 141 114 54 chr9 38832444 38832551 -79030076 - MLT1I LTR MaLR -3 406 316 1602 159 63 61 chr9 38832575 38832953 -79029674 + MLT1B LTR MaLR 11 389 -1 710 264 112 25 chr9 38832953 38833226 -79029401 - MLT1J2 LTR MaLR -137 313 17 324 352 22 6 chr9 38833231 38833410 -79029217 + MLT1L LTR MaLR 434 615 0 193 234 85 0 chr9 38833704 38833751 -79028876 + L2 LINE L2 3262 3312 -1 2035 115 3 16 chr9 38833820 38834132 -79028495 - AluSx SINE Alu -4 308 1 3790 164 6 3 chr9 38834693 38835333 -79027294 - L1MB4 LINE L1 0 6180 5539 283 227 93 0 chr9 38836745 38836820 -79025807 - L2 LINE L2 -52 3261 3180 406 231 46 0 chr9 38836857 38836965 -79025662 - MER20B DNA MER1_type -157 626 514 337 252 149 0 chr9 38837079 38837186 -79025441 - MER20B DNA MER1_type -267 516 394 210 71 0 0 chr9 38837216 38837244 -79025383 + (A)n Simple_repeat Simple_repeat 1 28 0 644 215 15 0 chr9 38837248 38837378 -79025249 + FLAM_A SINE Alu 1 132 -1 450 276 83 21 chr9 38837738 38837883 -79024744 + MIR3 SINE MIR 30 183 -25 364 272 68 49 chr9 38837947 38838271 -79024356 + L1ME4a LINE L1 5711 6040 -81 2039 149 18 37 chr9 38838531 38838913 -79023714 - THE1C LTR MaLR 0 375 1 525 316 48 0 chr9 38839003 38839171 -79023456 - MIR SINE MIR -74 188 13 27 0 0 0 chr9 38840296 38840323 -79022304 + AT_rich Low_complexity Low_complexity 1 27 0 191 289 0 0 chr9 38840453 38840498 -79022129 - L2 LINE L2 -17 3296 3252 269 225 25 62 chr9 38840576 38840656 -79021971 - MIR3 SINE MIR -50 158 82 2531 182 80 2 chr9 38840904 38841480 -79021147 - Charlie2 DNA MER1_type -11 2851 2231 480 232 71 0 chr9 38841490 38841602 -79021025 - MER91C DNA MER1_type -6 134 15 790 252 51 54 chr9 38841606 38841939 -79020688 - Charlie2 DNA MER1_type -2403 379 48 659 184 95 17 chr9 38842198 38842377 -79020250 - MIR SINE MIR -34 228 36 2233 104 0 0 chr9 38842440 38842747 -79019880 + AluSc SINE Alu 1 307 -2 327 270 88 15 chr9 38842771 38842831 -79019796 - MIR SINE MIR -13 249 195 1810 133 0 14 chr9 38842831 38842967 -79019660 + AluSx SINE Alu 1 137 -176 2309 99 0 0 chr9 38842967 38843271 -79019356 + AluSx SINE Alu 1 304 -8 1810 133 0 14 chr9 38843271 38843451 -79019176 + AluSx SINE Alu 137 313 0 327 270 88 15 chr9 38843451 38843526 -79019101 - MIR SINE MIR -67 195 103 239 306 31 10 chr9 38843769 38843867 -79018760 - L2 LINE L2 -5 3267 3168 470 286 32 0 chr9 38844308 38844434 -79018193 + MIR3 SINE MIR 71 200 -8 390 318 65 12 chr9 38845293 38845463 -79017164 + MIR SINE MIR 7 185 -77 351 190 13 25 chr9 38845475 38845554 -79017073 - L2 LINE L2 -7 3306 3229 394 263 230 0 chr9 38846081 38846233 -79016394 - MER5A DNA MER1_type -2 187 1 532 162 121 0 chr9 38846782 38846881 -79015746 - MER81 DNA DNA -3 111 1 485 291 82 19 chr9 38846931 38847137 -79015490 + MIR SINE MIR 13 231 -31 692 206 23 34 chr9 38847183 38847358 -79015269 - MER104 DNA Tc2 -1 179 7 206 360 11 34 chr9 38847358 38847447 -79015180 - L2 LINE L2 -42 3230 3144 277 228 117 28 chr9 38848575 38848720 -79013907 - L1ME4a LINE L1 -1 6120 5963 492 178 22 0 chr9 38848724 38848814 -79013813 - Zaphod DNA AcHobo 0 4031 3940 * 2974 233 82 27 chr9 38848792 38849641 -79012986 - Zaphod DNA AcHobo -3126 905 10 303 140 0 0 chr9 38849648 38849698 -79012929 + (TG)n Simple_repeat Simple_repeat 2 51 0 40 0 0 0 chr9 38849711 38849751 -79012876 + AT_rich Low_complexity Low_complexity 1 40 0 334 262 31 99 chr9 38849913 38849979 -79012648 - L1ME4a LINE L1 -280 5841 5772 2009 122 3 3 chr9 38849979 38850275 -79012352 - AluSx SINE Alu -16 296 1 334 262 31 99 chr9 38850275 38850399 -79012228 - L1ME4a LINE L1 -349 5772 5664 275 242 27 3 chr9 38850593 38850688 -79011939 + MIR SINE MIR 74 170 -62 254 270 27 14 chr9 38851061 38851135 -79011492 - L2 LINE L2 0 3272 3198 1234 224 174 10 chr9 38851316 38851713 -79010914 + MLT1C LTR MaLR 6 467 0 240 59 0 0 chr9 38851765 38851799 -79010828 + (TG)n Simple_repeat Simple_repeat 2 35 0 357 242 24 81 chr9 38851808 38851932 -79010695 + MIR3 SINE MIR 42 158 -50 1450 243 99 34 chr9 38852352 38852818 -79009809 - MLT1D LTR MaLR 0 505 10 488 264 36 48 chr9 38853193 38853296 -79009331 - MIR SINE MIR -72 190 88 3098 90 9 29 chr9 38853296 38853697 -79008930 - MER57B LTR ERV1 0 434 41 2212 116 0 3 chr9 38853697 38854008 -79008619 + AluSx SINE Alu 1 310 -2 3098 90 9 29 chr9 38854008 38854049 -79008578 - MER57B LTR ERV1 -393 41 1 488 264 36 48 chr9 38854049 38854112 -79008515 - MIR SINE MIR -174 88 26 236 216 189 18 chr9 38854167 38854278 -79008349 + MIR SINE MIR 23 152 -56 377 277 96 31 chr9 38855034 38855294 -79007333 - L1ME4a LINE L1 -204 5917 5641 21 0 0 0 chr9 38855294 38855315 -79007312 + AT_rich Low_complexity Low_complexity 1 21 0 1127 139 77 39 chr9 38855332 38855540 -79007087 + AluSg SINE Alu 5 220 -90 1251 167 8 33 chr9 38855642 38855887 -79006740 - AluJo SINE Alu -52 260 22 545 234 132 38 chr9 38855913 38856148 -79006479 - L1ME4a LINE L1 -487 5634 5378 309 353 13 20 chr9 38856253 38856403 -79006224 - MIR3 SINE MIR -59 149 1 292 365 28 14 chr9 38856856 38857001 -79005626 + MIR3 SINE MIR 33 179 -29 2068 122 0 3 chr9 38857201 38857505 -79005122 - AluSg SINE Alu -7 303 1 2024 131 3 0 chr9 38857517 38857808 -79004819 - AluSx SINE Alu -20 292 1 198 71 0 0 chr9 38858464 38858492 -79004135 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 291 309 40 0 chr9 38859129 38859255 -79003372 - L1ME4a LINE L1 -5 6116 5986 248 261 115 13 chr9 38859319 38859476 -79003151 - L1ME4a LINE L1 -238 5883 5711 797 167 0 0 chr9 38859483 38859603 -79003024 - AluJb SINE Alu -191 121 2 1463 153 83 63 chr9 38859604 38859905 -79002722 - AluJo SINE Alu -5 307 1 226 236 19 137 chr9 38859910 38859932 -79002695 - L1ME4a LINE L1 -383 5738 5715 334 237 13 0 chr9 38859932 38860008 -79002619 + MER116 DNA Mariner 1 77 -3 226 236 19 137 chr9 38860008 38860146 -79002481 - L1ME4a LINE L1 -406 5715 5597 228 281 78 102 chr9 38862408 38862575 -79000052 + L2 LINE L2 3107 3269 -3 258 32 0 0 chr9 38862870 38862901 -78999726 + (CA)n Simple_repeat Simple_repeat 2 32 0 271 305 169 23 chr9 38863124 38863301 -78999326 - L3 LINE CR1 -1258 319 117 296 243 21 86 chr9 38863429 38863569 -78999058 + MIR SINE MIR 92 222 -40 241 309 71 12 chr9 38863630 38863714 -78998913 - L2 LINE L2 -51 3221 3133 181 213 21 21 chr9 38865048 38865095 -78997532 + L2 LINE L2 3226 3272 0 292 286 68 62 chr9 38865304 38865496 -78997131 - L3 LINE CR1 -84 1493 1301 221 322 11 11 chr9 38866583 38866673 -78995954 - L2 LINE L2 -24 3248 3159 190 274 0 0 chr9 38866719 38866770 -78995857 + MIR SINE MIR 85 135 -73 258 250 15 15 chr9 38866897 38866965 -78995662 - L2 LINE L2 -1 3271 3204 201 220 154 0 chr9 38867458 38867549 -78995078 - L2 LINE L2 -225 3088 2984 392 178 29 5 chr9 38867945 38868039 -78994588 + MIR SINE MIR 71 166 -42 876 242 5 5 chr9 38868699 38868885 -78993742 + MIR SINE MIR 20 205 -57 551 239 65 107 chr9 38868997 38869180 -78993447 + MLT1K LTR MaLR 217 377 -211 2286 129 0 0 chr9 38869180 38869490 -78993137 + AluSx SINE Alu 1 310 -2 551 239 65 107 chr9 38869490 38869691 -78992936 + MLT1K LTR MaLR 377 585 -3 186 293 0 0 chr9 38869700 38869741 -78992886 + L2 LINE L2 3214 3254 -18 232 163 41 0 chr9 38870686 38870735 -78991892 - MIR SINE MIR -110 152 102 491 271 8 0 chr9 38872059 38872181 -78990446 + MIR SINE MIR 31 153 -109 481 246 34 0 chr9 38872181 38872299 -78990328 + MER94 DNA DNA 1 122 -12 218 161 81 0 chr9 38872308 38872370 -78990257 + MIR SINE MIR 141 207 -55 4240 135 25 73 chr9 38874187 38875054 -78987573 + L1MC1 LINE L1 5508 6333 0 323 307 54 17 chr9 38875067 38875308 -78987319 - L1ME4a LINE L1 -228 5893 5644 520 219 0 42 chr9 38875654 38875773 -78986854 - MER81 DNA DNA 0 114 1 393 340 122 26 chr9 38876181 38876425 -78986202 + MIR SINE MIR 2 262 0 376 293 55 103 chr9 38876504 38876958 -78985669 + L2 LINE L2 2830 3261 -11 203 335 77 16 chr9 38877017 38877199 -78985428 - L2 LINE L2 -209 3063 2871 809 141 41 18 chr9 38877351 38877521 -78985106 - MER53 DNA DNA -15 174 1 303 287 55 39 chr9 38878261 38878397 -78984230 - MIR SINE MIR -63 145 9 360 224 76 6 chr9 38878926 38879041 -78983586 - MLT1J1 LTR MaLR -1 445 330 352 136 30 0 chr9 38879041 38879107 -78983520 - MER53 DNA DNA 0 189 122 341 262 0 0 chr9 38879197 38879281 -78983346 - MER53 DNA DNA -105 84 1 756 247 67 25 chr9 38879288 38879571 -78983056 - MLT1J2 LTR MaLR -118 332 38 387 0 0 0 chr9 38879583 38879626 -78983001 + (CA)n Simple_repeat Simple_repeat 2 44 0 1487 209 48 18 chr9 38879890 38880220 -78982407 + MLT1A1 LTR MaLR 26 365 0 440 287 159 0 chr9 38880259 38880416 -78982211 + MIR SINE MIR 68 249 -13 740 236 20 35 chr9 38882176 38882375 -78980252 - MIR SINE MIR -16 246 51 195 310 100 0 chr9 38882563 38882663 -78979964 - L2 LINE L2 -1 3271 3162 215 227 0 15 chr9 38882782 38882848 -78979779 - L2 LINE L2 -293 2979 2915 511 301 88 5 chr9 38883369 38883562 -78979065 + MIR SINE MIR 37 245 -17 2429 89 13 0 chr9 38883640 38883943 -78978684 + AluSq SINE Alu 2 308 -5 289 186 68 0 chr9 38885017 38885076 -78977551 - MIR SINE MIR -116 146 84 256 147 58 32 chr9 38885284 38885440 -78977187 + (TG)n Simple_repeat Simple_repeat 2 161 0 511 88 59 24 chr9 38885469 38885639 -78976988 + (TG)n Simple_repeat Simple_repeat 1 176 0 254 106 62 26 chr9 38885653 38885766 -78976861 + (TG)n Simple_repeat Simple_repeat 1 117 0 583 47 76 23 chr9 38885780 38885951 -78976676 + (TG)n Simple_repeat Simple_repeat 1 180 0 219 112 64 32 chr9 38885982 38886107 -78976520 + (TG)n Simple_repeat Simple_repeat 1 129 0 542 357 80 15 chr9 38886411 38886736 -78975891 - L2 LINE L2 -754 2560 2215 180 271 42 0 chr9 38887015 38887063 -78975564 + L3b LINE CR1 1517 1566 -17 360 258 11 0 chr9 38888053 38888142 -78974485 - MER117 DNA MER1_type -107 90 1 2293 106 3 0 chr9 38888298 38888590 -78974037 - AluSp SINE Alu -20 293 1 2186 145 0 0 chr9 38889599 38889910 -78972717 + AluSx SINE Alu 1 311 -1 1802 159 37 14 chr9 38891301 38891597 -78971030 + AluJb SINE Alu 1 303 -9 389 133 24 0 chr9 38891597 38891680 -78970947 + GA-rich Low_complexity Low_complexity 1 85 0 519 17 0 0 chr9 38891842 38891902 -78970725 + (CA)n Simple_repeat Simple_repeat 1 60 0 796 182 63 0 chr9 38892023 38892182 -78970445 + MER3 DNA MER1_type 1 122 -87 533 267 148 18 chr9 38892673 38892890 -78969737 - MIR SINE MIR -16 246 2 336 260 126 0 chr9 38894678 38894805 -78967822 + MIR SINE MIR 45 187 -75 744 242 82 9 chr9 38894862 38895081 -78967546 + MIR SINE MIR 28 262 0 649 292 84 44 chr9 38895904 38896154 -78966473 - MLT1I LTR MaLR -1 408 149 676 228 42 50 chr9 38896332 38896492 -78966135 - MLT1I LTR MaLR -241 168 18 181 406 10 0 chr9 38896509 38896605 -78966022 + MIR SINE MIR 161 257 -5 214 188 42 0 chr9 38896634 38896682 -78965945 - MIR SINE MIR -123 139 90 501 264 42 0 chr9 38896883 38897027 -78965600 - MIR SINE MIR -77 185 36 203 79 26 0 chr9 38897211 38897249 -78965378 + (GA)n Simple_repeat Simple_repeat 1 39 0 345 200 114 19 chr9 38897449 38897554 -78965073 + MER91B DNA MER1_type 26 140 -50 1165 257 189 0 chr9 38897566 38897978 -78964649 + LTR33 LTR ERVL 25 514 -7 186 133 0 0 chr9 38899632 38899662 -78962965 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 453 220 167 13 chr9 38899798 38899957 -78962670 + MIR SINE MIR 63 244 -18 249 237 124 21 chr9 38901682 38901779 -78960848 - L2 LINE L2 -61 3211 3105 317 82 20 0 chr9 38901836 38901885 -78960742 + (TG)n Simple_repeat Simple_repeat 1 50 0 216 303 101 11 chr9 38902358 38902447 -78960180 + MIR SINE MIR 6 102 -160 819 247 109 39 chr9 38902458 38902741 -78959886 - MLT1I LTR MaLR 0 409 107 327 226 60 0 chr9 38902801 38902885 -78959742 + MIR SINE MIR 116 204 -58 303 193 23 34 chr9 38903541 38903629 -78958998 - MIR SINE MIR -10 252 166 671 253 142 4 chr9 38903763 38903988 -78958639 - MIR SINE MIR -5 257 2 516 313 34 57 chr9 38904014 38904311 -78958316 + L3 LINE CR1 1249 1538 -39 472 286 21 0 chr9 38905213 38905353 -78957274 + MIR3 SINE MIR 32 174 -34 355 226 150 15 chr9 38906167 38906300 -78956327 - MIR SINE MIR 0 262 112 857 150 9 141 chr9 38906449 38906587 -78956040 - MER5A DNA MER1_type -4 185 83 1447 144 15 0 chr9 38906587 38906850 -78955777 - L1MA2 LINE L1 0 6304 6038 857 150 9 141 chr9 38906850 38906924 -78955703 - MER5A DNA MER1_type -106 83 1 694 256 15 20 chr9 38906942 38907137 -78955490 + L2 LINE L2 3118 3311 -2 194 172 0 103 chr9 38907141 38907199 -78955428 - MIR SINE MIR -133 75 24 330 167 0 0 chr9 38907883 38907943 -78954684 + T-rich Low_complexity Low_complexity 1 60 0 635 260 72 27 chr9 38908309 38908532 -78954095 - MIR SINE MIR 0 262 30 249 309 102 21 chr9 38908588 38908730 -78953897 + MIR SINE MIR 31 182 -62 451 346 43 0 chr9 38908799 38908987 -78953640 - L3 LINE CR1 -237 1340 1145 283 252 184 0 chr9 38908979 38909082 -78953545 + MIR SINE MIR 107 228 -34 * 270 206 44 0 chr9 38909189 38909257 -78953370 - L1ME2 LINE L1 -11 6153 6083 3656 230 62 20 chr9 38909270 38911067 -78951560 - L1ME2 LINE L1 -153 6011 4132 529 344 26 33 chr9 38911285 38911558 -78951069 + MLT1I LTR MaLR 7 277 -132 546 260 32 0 chr9 38911704 38911858 -78950769 + MLT1I LTR MaLR 236 394 -15 389 300 72 65 chr9 38912953 38913243 -78949384 - L2 LINE L2 -86 3227 2936 311 301 91 38 chr9 38913312 38913603 -78949024 - L2 LINE L2 -177 3095 2712 708 278 79 59 chr9 38913947 38914353 -78948274 - MLT1K LTR MaLR -15 573 160 37 0 0 0 chr9 38914561 38914598 -78948029 + AT_rich Low_complexity Low_complexity 1 37 0 391 338 0 0 chr9 38914734 38914870 -78947757 + MIR SINE MIR 17 152 -56 243 320 40 13 chr9 38915161 38915311 -78947316 - L3 LINE CR1 -1 1576 1423 186 214 0 0 chr9 38915369 38915411 -78947216 - L2 LINE L2 -301 2971 2930 1514 152 7 82 chr9 38916021 38916324 -78946303 + AluJb SINE Alu 33 312 0 906 138 6 22 chr9 38916330 38916511 -78946116 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 668 156 25 33 chr9 38917141 38917263 -78945364 + FLAM_C SINE Alu 3 123 -20 357 192 51 45 chr9 38917855 38918011 -78944616 + (TCTCTG)n Simple_repeat Simple_repeat 5 161 0 222 279 32 26 chr9 38917944 38918098 -78944529 + CT-rich Low_complexity Low_complexity 6 160 0 * 203 59 0 29 chr9 38918107 38918141 -78944486 + (TC)n Simple_repeat Simple_repeat 1 33 0 218 247 82 0 chr9 38918818 38918903 -78943724 + MIR SINE MIR 56 147 -61 192 255 5 85 chr9 38919249 38919390 -78943237 + L2 LINE L2 2916 3040 -232 1149 240 92 45 chr9 38919694 38920186 -78942441 - LTR33 LTR ERVL -6 515 1 345 24 0 0 chr9 38921127 38921169 -78941458 + (CA)n Simple_repeat Simple_repeat 2 43 0 1102 274 97 32 chr9 38923026 38923501 -78939126 + MLT1J LTR MaLR 6 511 0 2070 118 0 13 chr9 38923790 38924103 -78938524 - AluSg SINE Alu -1 309 1 251 325 114 0 chr9 38924193 38924307 -78938320 - L3 LINE CR1 -36 1541 1415 301 362 8 8 chr9 38924536 38924663 -78937964 + L2 LINE L2 3145 3271 -1 523 299 16 27 chr9 38924956 38925143 -78937484 + MIR SINE MIR 23 207 -55 2013 239 71 2 chr9 38925474 38925938 -78936689 - MLT1E1 LTR MaLR -3 651 156 182 170 0 132 chr9 38926631 38926684 -78935943 + L2 LINE L2 3217 3262 -10 1143 226 50 27 chr9 38927021 38927322 -78935305 + MLT1J2 LTR MaLR 13 320 -130 253 167 21 0 chr9 38927357 38927405 -78935222 - MLT1E1 LTR MaLR -99 555 507 * 391 276 0 9 chr9 38927389 38927494 -78935133 + MLT1J2 LTR MaLR 347 450 0 719 226 0 0 chr9 38928157 38928290 -78934337 - FLAM_A SINE Alu 0 133 1 1942 149 117 3 chr9 38929019 38929369 -78933258 + MLT1B LTR MaLR 1 390 0 469 243 18 59 chr9 38930073 38930242 -78932385 + L2 LINE L2 2898 3059 -213 292 236 45 55 chr9 38930518 38930628 -78931999 - MIR SINE MIR -56 206 98 818 156 2 22 chr9 38931685 38931979 -78930648 + AluJo SINE Alu 5 246 -66 321 258 135 0 chr9 38931982 38932071 -78930556 + L2 LINE L2 3213 3313 0 205 178 0 0 chr9 38932918 38932963 -78929664 + T-rich Low_complexity Low_complexity 1 45 0 258 56 0 0 chr9 38933488 38933524 -78929103 + (TG)n Simple_repeat Simple_repeat 2 37 0 216 308 10 58 chr9 38935391 38935495 -78927132 + MIR3 SINE MIR 61 159 -49 182 295 82 0 chr9 38936290 38936351 -78926276 + MIR SINE MIR 120 185 -77 294 234 153 9 chr9 38937433 38937544 -78925083 + MIR3 SINE MIR 11 137 -71 387 269 0 37 chr9 38937888 38938022 -78924605 - MIR3 SINE MIR -78 130 2 190 239 0 0 chr9 38938739 38938785 -78923842 + MIR3 SINE MIR 147 192 -16 1060 248 0 0 chr9 38939915 38940137 -78922490 + MER58A DNA MER1_type 3 224 0 252 215 177 0 chr9 38940324 38940403 -78922224 - MIR SINE MIR -19 243 151 277 262 18 95 chr9 38940408 38940576 -78922051 + L2 LINE L2 2906 3060 -212 180 77 0 0 chr9 38940799 38940825 -78921802 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 717 161 0 0 chr9 38942077 38942226 -78920401 + (TG)n Simple_repeat Simple_repeat 2 150 0 197 214 0 0 chr9 38942555 38942597 -78920030 - MIR SINE MIR -109 153 112 1098 271 63 48 chr9 38942642 38943185 -78919442 + LTR67 LTR ERVL 7 557 0 767 269 29 29 chr9 38943356 38943601 -78919026 + MIR SINE MIR 6 250 -12 464 303 46 7 chr9 38944021 38944173 -78918454 - MER91A DNA MER1_type -4 192 35 349 223 250 0 chr9 38945442 38945554 -78917073 - MER117 DNA MER1_type -47 150 11 193 156 0 0 chr9 38946301 38946333 -78916294 - MIR SINE MIR -63 145 114 288 0 0 0 chr9 38947421 38947453 -78915174 + (CA)n Simple_repeat Simple_repeat 1 32 0 181 239 22 0 chr9 38947828 38947874 -78914753 + L2 LINE L2 3012 3058 -214 796 210 85 28 chr9 38948335 38948583 -78914044 + L2 LINE L2 3039 3300 -13 186 43 0 0 chr9 38948583 38948606 -78914021 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 215 298 145 32 chr9 38949071 38949195 -78913432 - L2 LINE L2 -214 3058 2921 411 282 32 0 chr9 38950119 38950243 -78912384 + MIR SINE MIR 70 197 -65 544 301 13 13 chr9 38950989 38951203 -78911424 + MIR SINE MIR 5 216 -46 314 306 0 24 chr9 38951358 38951482 -78911145 - MIR3 SINE MIR 0 208 88 189 308 31 0 chr9 38951894 38951959 -78910668 - MIR SINE MIR -112 96 30 386 319 43 57 chr9 38952054 38952264 -78910363 - L1MC4 LINE L1 -7 8035 7829 465 216 8 71 chr9 38952297 38952457 -78910170 - L1ME2 LINE L1 0 6162 6013 273 314 7 29 chr9 38953379 38953519 -78909108 + (CATATA)n Simple_repeat Simple_repeat 4 140 0 399 245 65 79 chr9 38953519 38953658 -78908969 + MIR3 SINE MIR 49 185 -23 246 245 85 11 chr9 38954007 38954101 -78908526 + MIR SINE MIR 39 139 -123 269 163 0 0 chr9 38954401 38954450 -78908177 + Charlie8 DNA MER1_type 1380 1428 -989 356 268 57 128 chr9 38954826 38955210 -78907417 + L2 LINE L2 2873 3229 -43 1724 111 0 0 chr9 38955599 38955843 -78906784 - AluY SINE Alu -4 307 64 243 269 187 23 chr9 38957055 38957226 -78905401 + MIR SINE MIR 14 212 -50 247 289 16 33 chr9 38958240 38958361 -78904266 - L2 LINE L2 -53 3219 3101 485 218 16 129 chr9 38958781 38958822 -78903805 + MER5B DNA MER1_type 1 45 -133 2271 88 0 3 chr9 38958822 38959117 -78903510 + AluY SINE Alu 1 294 -17 2198 102 7 0 chr9 38959126 38959420 -78903207 + AluSg SINE Alu 1 296 -14 485 218 16 129 chr9 38959420 38959561 -78903066 + MER5B DNA MER1_type 53 171 -7 228 67 0 0 chr9 38960097 38960127 -78902500 + (GGGGA)n Simple_repeat Simple_repeat 3 32 0 251 185 0 37 chr9 38960281 38960335 -78902292 - L2 LINE L2 0 3313 3262 1535 244 83 19 chr9 38960356 38961002 -78901625 - L2 LINE L2 0 3313 2608 466 329 0 0 chr9 38961995 38962138 -78900489 + MER91A DNA MER1_type 1 143 -53 778 121 7 29 chr9 38962419 38962559 -78900068 - FRAM SINE Alu -39 137 1 224 288 56 56 chr9 38962613 38962738 -78899889 - MIR SINE MIR -43 165 41 308 329 119 24 chr9 38962749 38962959 -78899668 + MIR SINE MIR 17 246 -16 2085 107 0 0 chr9 38962961 38963241 -78899386 + AluSg SINE Alu 1 280 -30 181 292 0 0 chr9 38964590 38964638 -78897989 + L2 LINE L2 3225 3272 0 311 247 0 35 chr9 38964643 38964728 -78897899 + GA-rich Low_complexity Low_complexity 4 85 0 211 283 221 0 chr9 38965844 38965957 -78896670 + MIR3 SINE MIR 61 198 -10 251 222 0 14 chr9 38966822 38966894 -78895733 + CT-rich Low_complexity Low_complexity 1 71 0 180 255 0 39 chr9 38968419 38968470 -78894157 + L2 LINE L2 2927 2975 -338 218 244 78 44 chr9 38968802 38968892 -78893735 + MIR SINE MIR 162 254 -8 1383 63 0 0 chr9 38968921 38969180 -78893447 + (TGGA)n Simple_repeat Simple_repeat 1 259 0 288 273 81 87 chr9 38971399 38971571 -78891056 - MIR3 SINE MIR -6 202 32 494 278 120 102 chr9 38971920 38972370 -78890257 + L2 LINE L2 2815 3272 0 298 346 46 20 chr9 38972764 38972917 -78889710 - L3 LINE CR1 -149 1428 1272 186 228 70 0 chr9 38972924 38972981 -78889646 - MIR SINE MIR -87 121 61 951 221 77 17 chr9 38973873 38974108 -78888519 - MIR SINE MIR 0 262 14 368 346 10 0 chr9 38974279 38974383 -78888244 - L2 LINE L2 -9 3263 3159 1544 232 93 27 chr9 38974527 38975001 -78887626 + MLT1D LTR MaLR 1 505 0 244 329 141 0 chr9 38975791 38975940 -78886687 + L3 LINE CR1 659 828 -749 1950 145 6 22 chr9 38976056 38976367 -78886260 + AluJb SINE Alu 1 306 -6 1407 214 49 40 chr9 38976791 38977240 -78885387 + MLT1D LTR MaLR 53 505 0 215 291 0 0 chr9 38977441 38977496 -78885131 - L2 LINE L2 -253 3060 3006 739 284 44 25 chr9 38977868 38978230 -78884397 + L1M4 LINE L1 3805 4173 -1973 606 250 76 0 chr9 38978858 38979002 -78883625 + MIR SINE MIR 1 155 -107 * 836 256 97 0 chr9 38978995 38979222 -78883405 - MIR SINE MIR -1 261 13 278 213 29 24 chr9 38979464 38979559 -78883068 + MLT1I LTR MaLR 72 135 -274 249 219 111 11 chr9 38979675 38979809 -78882818 + MLT1I LTR MaLR 278 535 -14 452 273 36 0 chr9 38980579 38980689 -78881938 - MIR SINE MIR -61 147 34 400 292 16 40 chr9 38980942 38981192 -78881435 + L1M4 LINE L1 4881 5124 -1022 * 3699 166 36 14 chr9 38981185 38982174 -78880453 + L1MB8 LINE L1 4977 5991 -187 378 262 8 48 chr9 38982455 38982581 -78880046 + MIR SINE MIR 28 148 -114 454 179 28 19 chr9 38982620 38982726 -78879901 + MLT1G LTR MaLR 12 118 -472 512 213 95 22 chr9 38982752 38982903 -78879724 - MIR SINE MIR -35 227 69 * 748 203 31 129 chr9 38982902 38983158 -78879469 - MIR SINE MIR 0 262 32 197 267 147 43 chr9 38983194 38983310 -78879317 + L2 LINE L2 3182 3309 -4 371 229 30 99 chr9 38984061 38984192 -78878435 + MIR3 SINE MIR 79 200 -8 2338 107 0 0 chr9 38984418 38984718 -78877909 + AluSx SINE Alu 1 300 -12 276 197 0 14 chr9 38984723 38984794 -78877833 + LTR37B LTR ERV1 399 468 0 438 274 37 30 chr9 38985937 38986072 -78876555 - MIR SINE MIR 0 262 127 337 261 16 64 chr9 38986294 38986482 -78876145 + L1MC4a LINE L1 5763 5941 -1867 750 300 21 0 chr9 38988096 38988286 -78874341 + MIR SINE MIR 54 247 -15 445 255 143 43 chr9 38988436 38988597 -78874030 + MIR SINE MIR 17 193 -69 394 204 0 61 chr9 38988872 38988970 -78873657 - MIR SINE MIR -25 237 146 714 219 174 18 chr9 38988989 38989208 -78873419 + MIR SINE MIR 8 260 -2 448 274 39 33 chr9 38989218 38989371 -78873256 - MIR SINE MIR -107 155 2 806 309 23 15 chr9 38989979 38990470 -78872157 - LTR67 LTR ERVL 0 557 19 191 313 15 0 chr9 38991029 38991096 -78871531 + L2 LINE L2 3204 3271 -1 217 324 59 20 chr9 38991111 38991213 -78871414 - L2 LINE L2 -19 3294 3189 352 256 86 34 chr9 38992171 38992288 -78870339 - MIR SINE MIR -80 182 60 181 292 69 76 chr9 38992837 38992981 -78869646 + MIR3 SINE MIR 3 145 -63 186 43 0 0 chr9 38993035 38993058 -78869569 + (TG)n Simple_repeat Simple_repeat 2 24 0 363 289 10 0 chr9 38993551 38993655 -78868972 + MIR SINE MIR 32 136 -126 206 287 26 61 chr9 38993735 38993850 -78868777 - MIR SINE MIR -40 222 112 271 291 0 43 chr9 38994705 38994822 -78867805 + GA-rich Low_complexity Low_complexity 1 112 0 1792 215 153 23 chr9 38995762 38996330 -78866297 - MER115 DNA AcHobo 0 693 52 2094 125 0 47 chr9 38996360 38996681 -78865946 - AluSx SINE Alu -6 306 1 1056 166 33 5 chr9 38996806 38997017 -78865610 + L1MA7 LINE L1 6075 6291 0 23 54 0 0 chr9 38997017 38997054 -78865573 + AT_rich Low_complexity Low_complexity 1 37 0 360 125 0 0 chr9 38998047 38998111 -78864516 + (CA)n Simple_repeat Simple_repeat 1 64 0 250 296 130 0 chr9 38998499 38998614 -78864013 - L2 LINE L2 -1 3271 3142 181 390 0 0 chr9 38998896 38998978 -78863649 - MIR SINE MIR -94 114 33 996 321 87 57 chr9 38999114 38999210 -78863417 + L1M4 LINE L1 3070 3162 -2984 1793 131 67 25 chr9 38999210 38999492 -78863135 + AluSx SINE Alu 9 302 -10 996 321 87 57 chr9 38999492 39000077 -78862550 + L1M4 LINE L1 3162 3771 -2375 1049 128 5 32 chr9 39000576 39000763 -78861864 + MER49 LTR ERV1 715 896 -27 1527 214 61 6 chr9 39001326 39002352 -78860275 + L1 LINE L1 2637 3757 -2389 478 281 40 62 chr9 39002527 39002751 -78859876 - MIR SINE MIR -10 252 34 327 262 13 42 chr9 39002796 39002954 -78859673 + MIR SINE MIR 64 214 -48 764 175 0 0 chr9 39004318 39004438 -78858189 + FLAM_A SINE Alu 1 120 -13 970 275 0 4 chr9 39005001 39005241 -78857386 + MIR SINE MIR 1 239 -23 419 316 98 57 chr9 39005905 39006149 -78856478 - L2 LINE L2 0 3272 3019 406 269 39 18 chr9 39006390 39006567 -78856060 - MIR SINE MIR -71 191 19 404 287 173 7 chr9 39006834 39006984 -78855643 + MIR3 SINE MIR 20 194 -14 2347 160 49 39 chr9 39007200 39007694 -78854933 + MLT1D LTR MaLR 1 499 -6 580 208 135 78 chr9 39007865 39008057 -78854570 - MIR SINE MIR -36 226 24 331 337 10 0 chr9 39008339 39008437 -78854190 - L3 LINE CR1 -143 1434 1336 1820 148 4 0 chr9 39009021 39009284 -78853343 + AluJb SINE Alu 35 298 -14 246 296 0 0 chr9 39009508 39009562 -78853065 + L2 LINE L2 3127 3180 -92 200 229 0 57 chr9 39010506 39010576 -78852051 - L2 LINE L2 -298 2974 2909 834 249 17 9 chr9 39010680 39010884 -78851743 - MER102a DNA MER1_type -1090 327 119 1814 129 0 4 chr9 39010884 39011139 -78851488 - AluJb SINE Alu -5 307 54 834 249 17 9 chr9 39011139 39011167 -78851460 - MER102a DNA MER1_type -1298 119 93 597 231 108 51 chr9 39011252 39011547 -78851080 - L1MC4a LINE L1 -1767 6041 5730 180 268 18 36 chr9 39011786 39011842 -78850785 + L3 LINE CR1 1407 1461 -116 204 40 0 0 chr9 39012003 39012028 -78850599 + (TTCA)n Simple_repeat Simple_repeat 3 27 0 390 302 177 36 chr9 39012048 39012353 -78850274 + L2 LINE L2 2945 3292 -21 891 106 8 15 chr9 39012397 39012529 -78850098 - FLAM_C SINE Alu -2 131 1 776 274 41 0 chr9 39013307 39013526 -78849101 - MIR SINE MIR 0 262 35 412 224 121 0 chr9 39013642 39013758 -78848869 + MIR3 SINE MIR 35 164 -44 389 278 38 41 chr9 39013915 39014100 -78848527 - MIR3 SINE MIR -61 147 11 1917 244 49 17 chr9 39015090 39015795 -78846832 + MER20B DNA MER1_type 6 778 -5 524 267 61 113 chr9 39016003 39016559 -78846068 - L1MC4a LINE L1 -529 5592 5356 414 286 82 18 chr9 39016630 39016801 -78845826 - L1MC4a LINE L1 -846 5300 5119 1817 153 53 0 chr9 39016859 39017141 -78845486 + AluJo SINE Alu 1 297 -15 300 294 100 18 chr9 39017326 39017654 -78844973 - L1MC4a LINE L1 -1296 4850 4498 21 0 0 0 chr9 39017704 39017725 -78844902 + AT_rich Low_complexity Low_complexity 1 21 0 2083 167 0 0 chr9 39017743 39018054 -78844573 - AluSx SINE Alu -1 311 1 21 82 0 0 chr9 39018095 39018144 -78844483 + AT_rich Low_complexity Low_complexity 1 49 0 483 235 134 32 chr9 39018372 39018559 -78844068 - MER102a DNA MER1_type -11 319 114 14928 100 24 22 chr9 39018761 39019454 -78843173 + Tigger1 DNA MER2_type 4 694 -1724 1997 150 7 0 chr9 39019454 39019747 -78842880 + AluJo SINE Alu 5 299 -13 14928 100 24 22 chr9 39019747 39020631 -78841996 + Tigger1 DNA MER2_type 694 1589 -829 2536 78 3 0 chr9 39020631 39020937 -78841690 + AluSg1 SINE Alu 1 307 -2 14928 100 24 22 chr9 39020937 39021645 -78840982 + Tigger1 DNA MER2_type 1589 2294 -124 1229 146 15 0 chr9 39021647 39021846 -78840781 - MER46A DNA MER2_type -2 234 33 743 156 0 37 chr9 39021856 39021873 -78840754 + Tigger1 DNA MER2_type 2288 2304 -114 2578 78 3 0 chr9 39021873 39022182 -78840445 - AluSq SINE Alu -3 310 1 743 156 0 37 chr9 39022182 39022299 -78840328 + Tigger1 DNA MER2_type 2304 2417 -1 252 237 235 0 chr9 39022393 39022503 -78840124 - MIR3 SINE MIR -33 175 62 642 290 138 17 chr9 39022521 39022752 -78839875 + MIR SINE MIR 4 262 0 252 364 66 0 chr9 39022824 39022945 -78839682 + MIR SINE MIR 19 147 -61 560 338 54 4 chr9 39023678 39023918 -78838709 - MIR SINE MIR -2 260 9 408 262 28 0 chr9 39024984 39025091 -78837536 - MIR3 SINE MIR -6 202 93 2041 151 7 0 chr9 39025507 39025799 -78836828 + AluJb SINE Alu 1 294 -18 824 148 11 17 chr9 39025804 39025980 -78836647 + GA-rich Low_complexity Low_complexity 1 175 0 293 115 0 19 chr9 39025984 39026036 -78836591 + (GGAA)n Simple_repeat Simple_repeat 2 52 0 806 304 33 28 chr9 39026472 39026863 -78835764 + L1M4 LINE L1 4633 5025 -1121 699 223 73 59 chr9 39027159 39027379 -78835248 - MIR SINE MIR -11 251 29 539 288 85 5 chr9 39027418 39027630 -78834997 - MER112 DNA MER1_type -31 229 1 2426 104 0 3 chr9 39028876 39029183 -78833444 - AluSx SINE Alu -4 308 3 294 304 22 22 chr9 39029429 39029564 -78833063 + L2 LINE L2 2924 3058 -214 195 204 86 97 chr9 39029651 39029744 -78832883 + L2 LINE L2 3181 3272 0 724 143 14 0 chr9 39030372 39030512 -78832115 + GA-rich Low_complexity Low_complexity 3 144 0 2074 134 3 3 chr9 39030911 39031202 -78831425 - AluSx SINE Alu -21 291 1 2253 119 0 10 chr9 39031392 39031702 -78830925 - AluJb SINE Alu -5 307 1 333 327 7 17 chr9 39031750 39031899 -78830728 + MIR SINE MIR 20 164 -64 214 284 59 0 chr9 39032459 39032561 -78830066 + MIR3 SINE MIR 96 203 -5 568 202 64 143 chr9 39032567 39032742 -78829885 + L1MC5 LINE L1 7432 7619 -342 2324 99 0 7 chr9 39032742 39033045 -78829582 + AluSx SINE Alu 1 301 -11 568 202 64 143 chr9 39033045 39033168 -78829459 + L1MC5 LINE L1 7619 7696 -265 1760 172 42 0 chr9 39033168 39033453 -78829174 + AluJo SINE Alu 1 297 -15 568 202 64 143 chr9 39033453 39033530 -78829097 + L1MC5 LINE L1 7696 7778 -183 1424 253 59 5 chr9 39033539 39033927 -78828700 + L1MB8 LINE L1 5770 6178 0 2024 134 43 3 chr9 39034049 39034348 -78828279 + AluSx SINE Alu 1 311 -1 271 315 91 0 chr9 39034964 39035107 -78827520 + MIR3 SINE MIR 29 184 -24 282 305 76 8 chr9 39035268 39035430 -78827197 + MIR SINE MIR 3 175 -69 958 173 43 19 chr9 39035542 39035750 -78826877 + L1MD1 LINE L1 6027 6239 -3 375 307 87 41 chr9 39035868 39036086 -78826541 + L2 LINE L2 3044 3271 -1 2323 108 7 0 chr9 39036275 39036581 -78826046 + AluSp SINE Alu 1 308 -5 291 210 328 0 chr9 39036920 39037039 -78825588 - L3 LINE CR1 -119 1458 1301 429 70 0 0 chr9 39037992 39038049 -78824578 + (CA)n Simple_repeat Simple_repeat 1 57 0 642 230 159 26 chr9 39038330 39038556 -78824071 - MIR SINE MIR -3 259 4 314 261 194 37 chr9 39038566 39038700 -78823927 - MIR SINE MIR -106 156 2 348 133 0 0 chr9 39040949 39041009 -78821618 + (GA)n Simple_repeat Simple_repeat 2 61 0 460 254 0 25 chr9 39041926 39042048 -78820579 + L2 LINE L2 3178 3296 -17 460 286 121 15 chr9 39042300 39042499 -78820128 + MIR SINE MIR 9 228 -34 217 249 0 0 chr9 39042542 39042599 -78820028 + MIR SINE MIR 36 92 -116 290 275 114 8 chr9 39043367 39043498 -78819129 - MIR3 SINE MIR -20 188 44 376 221 12 12 chr9 39043827 39043913 -78818714 - MIR SINE MIR -103 159 74 366 23 0 0 chr9 39044701 39044744 -78817883 + (CA)n Simple_repeat Simple_repeat 2 44 0 1806 175 7 0 chr9 39045079 39045371 -78817256 + AluJo SINE Alu 1 294 -18 717 253 39 0 chr9 39045456 39045634 -78816993 - MIR SINE MIR -70 192 8 1875 163 3 22 chr9 39046399 39046712 -78815915 - AluJb SINE Alu -1 311 5 781 255 27 0 chr9 39046926 39047114 -78815513 + MIR SINE MIR 53 245 -17 1363 142 102 0 chr9 39048563 39048789 -78813838 - AluJo SINE Alu -3 309 61 220 220 0 0 chr9 39048816 39048866 -78813761 + (TTATA)n Simple_repeat Simple_repeat 4 53 0 453 304 82 25 chr9 39049172 39049415 -78813212 - MIR SINE MIR 0 262 6 247 274 64 76 chr9 39050129 39050226 -78812401 - MIR SINE MIR -1 261 164 2357 68 4 0 chr9 39050226 39050535 -78812092 - AluY SINE Alu 0 310 1 247 274 64 76 chr9 39050535 39050593 -78812034 - MIR SINE MIR -98 164 107 205 315 196 0 chr9 39050760 39050852 -78811775 - MIR SINE MIR -150 112 3 860 300 63 28 chr9 39051576 39051906 -78810721 - L3 LINE CR1 -1 1576 1228 2319 99 0 10 chr9 39051906 39052209 -78810418 - AluSg SINE Alu -2 308 9 860 300 63 28 chr9 39052209 39052275 -78810352 - L3 LINE CR1 -349 1228 1166 473 309 60 28 chr9 39052397 39052830 -78809797 - L1MEd LINE L1 -3499 2630 2184 21 0 0 0 chr9 39052912 39052933 -78809694 + AT_rich Low_complexity Low_complexity 1 21 0 3260 222 71 28 chr9 39053307 39053410 -78809217 - L1MCb LINE L1 -4009 2736 2639 1517 119 5 5 chr9 39053410 39053620 -78809007 - AluSg/x SINE Alu -7 303 94 3260 222 71 28 chr9 39053620 39054966 -78807661 - L1MCb LINE L1 -4106 2639 1009 2106 143 3 0 chr9 39054966 39055259 -78807368 + AluJb SINE Alu 1 294 -18 3260 222 71 28 chr9 39055259 39055412 -78807215 - L1MCb LINE L1 -5736 1009 864 307 271 23 45 chr9 39055435 39055568 -78807059 - L1MCb LINE L1 -6292 272 143 * 674 294 79 46 chr9 39055564 39056586 -78806041 - L1MEd LINE L1 -788 1702 551 498 336 35 35 chr9 39056655 39056941 -78805686 - L1MEd LINE L1 -5711 408 123 304 244 64 26 chr9 39056953 39057031 -78805596 - L1MC4 LINE L1 -1334 6708 6628 26 74 0 0 chr9 39057091 39057145 -78805482 + AT_rich Low_complexity Low_complexity 1 54 0 213 94 0 0 chr9 39057406 39057438 -78805189 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 277 292 115 0 chr9 39057602 39057698 -78804929 - MIR3 SINE MIR -11 197 91 205 367 7 43 chr9 39059827 39059966 -78802661 + L2 LINE L2 2672 2805 -509 410 326 63 0 chr9 39060382 39060572 -78802055 - L3 LINE CR1 -2 1575 1374 269 309 151 72 chr9 39060599 39060903 -78801724 - L3 LINE CR1 -343 1234 907 361 317 104 39 chr9 39060972 39061202 -78801425 + MIR SINE MIR 13 257 -5 264 167 0 0 chr9 39062973 39063021 -78799606 + (CA)n Simple_repeat Simple_repeat 2 49 0 335 208 158 42 chr9 39063813 39063933 -78798694 - MIR3 SINE MIR -71 137 4 236 340 133 13 chr9 39065000 39065150 -78797477 + MIR3 SINE MIR 36 203 -5 2329 93 0 3 chr9 39065174 39065476 -78797151 + AluY SINE Alu 1 301 -10 2356 105 0 10 chr9 39065482 39065796 -78796831 + AluSq SINE Alu 1 311 -2 465 314 116 19 chr9 39066052 39066547 -78796080 + L2 LINE L2 2766 3310 -3 343 280 65 0 chr9 39066550 39066643 -78795984 + MIR3 SINE MIR 78 176 -32 577 234 43 14 chr9 39068097 39068238 -78794389 - MIR SINE MIR -29 233 89 1414 273 70 18 chr9 39068385 39068829 -78793798 + L1MC4a LINE L1 5488 5954 -1854 261 139 0 0 chr9 39070083 39070126 -78792501 + (CA)n Simple_repeat Simple_repeat 1 43 0 335 138 17 0 chr9 39070878 39070936 -78791691 + AluS SINE Alu 2 60 -248 28 29 0 0 chr9 39071168 39071203 -78791424 + AT_rich Low_complexity Low_complexity 1 35 0 187 200 0 0 chr9 39071927 39071972 -78790655 + L2 LINE L2 3017 3061 -211 234 298 36 12 chr9 39072267 39072351 -78790276 - L2 LINE L2 -51 3221 3136 525 281 28 28 chr9 39073443 39073621 -78789006 + MIR3 SINE MIR 2 179 -29 2406 93 0 0 chr9 39073921 39074221 -78788406 + AluSx SINE Alu 1 300 -12 1116 42 0 0 chr9 39074222 39074364 -78788263 + (GGAAA)n Simple_repeat Simple_repeat 4 145 0 1862 143 0 52 chr9 39074760 39074899 -78787728 + AluJo SINE Alu 1 146 -166 2212 121 20 0 chr9 39074899 39075197 -78787430 + AluSx SINE Alu 1 304 -8 1862 143 0 52 chr9 39075197 39075365 -78787262 + AluJo SINE Alu 146 292 -20 694 284 51 9 chr9 39075539 39075754 -78786873 - MIR SINE MIR -17 245 22 416 298 21 35 chr9 39075799 39075940 -78786687 + MIR SINE MIR 118 256 -6 456 234 38 3 chr9 39076293 39076418 -78786209 - MIR SINE MIR -57 151 64 778 252 39 47 chr9 39076460 39076558 -78786069 + MIR SINE MIR 4 101 -161 2405 93 0 0 chr9 39076558 39076860 -78785767 - AluY SINE Alu -9 302 1 778 252 39 47 chr9 39076860 39077019 -78785608 + MIR SINE MIR 101 259 -3 207 245 404 0 chr9 39077032 39077126 -78785501 + L2 LINE L2 3137 3268 -4 192 315 19 0 chr9 39077646 39077700 -78784927 - L2 LINE L2 -14 3258 3204 636 147 120 33 chr9 39078319 39078469 -78784158 - MIR SINE MIR -16 246 84 533 233 58 0 chr9 39078487 39078607 -78784020 - MIR SINE MIR -129 133 7 1612 147 132 7 chr9 39078697 39078969 -78783658 - AluY SINE Alu -5 306 1 303 315 76 33 chr9 39078974 39079158 -78783469 - L2 LINE L2 -254 3018 2827 207 0 0 0 chr9 39079679 39079702 -78782925 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 468 243 17 23 chr9 39080713 39080889 -78781738 - MIR SINE MIR -59 203 32 339 335 68 23 chr9 39081001 39081177 -78781450 - MIR3 SINE MIR -9 199 16 1603 219 58 42 chr9 39082033 39082595 -78780032 + L2 LINE L2 2750 3309 -4 255 197 289 0 chr9 39082927 39083003 -78779624 + MIR SINE MIR 55 152 -110 2104 130 3 0 chr9 39083169 39083469 -78779158 + AluSx SINE Alu 12 312 0 2503 237 65 1 chr9 39084099 39084794 -78777833 + MER20B DNA MER1_type 34 772 -11 1133 114 0 0 chr9 39084800 39084949 -78777678 - AluJb SINE Alu -163 149 1 527 318 33 0 chr9 39085504 39085611 -78777016 + MIR SINE MIR 7 122 -140 2397 78 0 47 chr9 39085611 39085931 -78776696 - AluSq SINE Alu -8 305 1 527 318 33 0 chr9 39085931 39085974 -78776653 + MIR SINE MIR 122 162 -100 469 259 0 0 chr9 39086147 39086255 -78776372 - MIR3 SINE MIR -34 174 67 234 330 53 0 chr9 39086662 39086756 -78775871 - L2 LINE L2 -36 3236 3138 22 70 0 0 chr9 39087241 39087284 -78775343 + GC_rich Low_complexity Low_complexity 1 43 0 31 0 0 0 chr9 39087314 39087345 -78775282 + GC_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr9 39087432 39087453 -78775174 + GC_rich Low_complexity Low_complexity 1 21 0 46 54 0 0 chr9 39087493 39087567 -78775060 + GC_rich Low_complexity Low_complexity 1 74 0 255 331 57 16 chr9 39088160 39088284 -78774343 - MIR SINE MIR -21 241 113 467 313 61 0 chr9 39088402 39088565 -78774062 - MIR SINE MIR -19 243 71 202 299 126 0 chr9 39088671 39088758 -78773869 - MIR3 SINE MIR -53 155 58 180 77 0 0 chr9 39088988 39089014 -78773613 + (CCTG)n Simple_repeat Simple_repeat 2 27 0 200 338 14 0 chr9 39089177 39089248 -78773379 + G-rich Low_complexity Low_complexity 5 76 0 2037 135 0 7 chr9 39089574 39089862 -78772765 + AluJo SINE Alu 21 306 -6 480 266 113 20 chr9 39089977 39090180 -78772447 - MIR SINE MIR 0 262 41 662 225 164 24 chr9 39090489 39090702 -78771925 + MIR SINE MIR 19 261 -1 532 327 78 37 chr9 39091005 39091326 -78771301 - L2 LINE L2 -7 3265 2932 452 318 188 0 chr9 39091316 39091508 -78771119 - MIR SINE MIR 0 262 35 * 436 285 184 46 chr9 39091516 39091863 -78770764 - L2 LINE L2 -385 2929 2535 2140 133 3 0 chr9 39092003 39092304 -78770323 + AluJb SINE Alu 1 302 -10 234 183 232 49 chr9 39092424 39092506 -78770121 - MIR SINE MIR -91 117 21 646 208 78 0 chr9 39092511 39092665 -78769962 - MIR3 SINE MIR -10 198 33 1919 173 92 50 chr9 39093998 39094097 -78768530 + Charlie1b DNA MER1_type 1 94 -2667 774 70 0 0 chr9 39094097 39094197 -78768430 - L1PA8 LINE L1 -3 6169 6070 1919 173 92 50 chr9 39094197 39094599 -78768028 + Charlie1b DNA MER1_type 94 523 0 243 321 117 31 chr9 39094638 39094800 -78767827 - MIR3 SINE MIR -7 201 26 201 284 104 37 chr9 39095442 39095576 -78767051 + MIR3 SINE MIR 29 171 -37 490 226 65 85 chr9 39095879 39096078 -78766549 - Charlie8 DNA MER1_type -2211 206 12 316 223 68 39 chr9 39096835 39096938 -78765689 + MIR3 SINE MIR 79 184 -24 355 281 50 44 chr9 39097404 39097564 -78765063 - MIR SINE MIR -12 250 90 199 212 24 0 chr9 39097998 39098083 -78764544 + GA-rich Low_complexity Low_complexity 1 87 0 473 344 57 16 chr9 39099189 39099436 -78763191 - L3 LINE CR1 -103 1474 1218 274 237 0 17 chr9 39099668 39099727 -78762900 - L2 LINE L2 0 3272 3215 1080 156 21 5 chr9 39099729 39099921 -78762706 + Charlie5 DNA MER1_type 1 195 -2417 1306 158 27 4 chr9 39099930 39100189 -78762438 + Charlie5 DNA MER1_type 2358 2622 0 209 289 0 0 chr9 39100742 39100794 -78761833 + MIR SINE MIR 94 145 -63 685 215 0 7 chr9 39101647 39101782 -78760845 + AluSq/x SINE Alu 2 135 -178 979 290 116 37 chr9 39101798 39102315 -78760312 - L3 LINE CR1 -37 1540 983 240 35 0 0 chr9 39102986 39103015 -78759612 + (T)n Simple_repeat Simple_repeat 1 29 0 243 0 0 0 chr9 39104330 39104357 -78758270 + (A)n Simple_repeat Simple_repeat 1 27 0 630 219 124 55 chr9 39104558 39104732 -78757895 - MIR SINE MIR 0 262 71 1997 125 23 20 chr9 39104732 39105035 -78757592 + AluJo SINE Alu 2 305 -7 630 219 124 55 chr9 39105035 39105061 -78757566 - MIR SINE MIR -191 71 48 409 275 99 24 chr9 39105152 39105321 -78757306 - MIR SINE MIR -62 146 13 385 323 0 0 chr9 39106005 39106098 -78756529 + MIR SINE MIR 40 132 -76 422 327 7 26 chr9 39106634 39106787 -78755840 - MIR3 SINE MIR -32 176 27 21 0 0 0 chr9 39107618 39107639 -78754988 + AT_rich Low_complexity Low_complexity 1 21 0 344 262 5 129 chr9 39107833 39108035 -78754592 + MIR3 SINE MIR 3 179 -29 380 347 28 0 chr9 39108042 39108186 -78754441 + MIR3 SINE MIR 57 204 -4 306 194 0 14 chr9 39108866 39108938 -78753689 - L1ME4a LINE L1 -2 6119 6049 1129 165 0 0 chr9 39109046 39109222 -78753405 - AluSg/x SINE Alu -1 309 134 2159 120 19 7 chr9 39109223 39109531 -78753096 - AluSx SINE Alu 0 312 1 261 233 0 0 chr9 39109535 39109595 -78753032 - L1ME4a LINE L1 -215 5906 5847 974 269 45 12 chr9 39110392 39110634 -78751993 + MIR SINE MIR 13 262 0 1798 122 20 20 chr9 39110720 39111016 -78751611 + L1MA2 LINE L1 6009 6304 0 294 333 0 0 chr9 39111495 39111567 -78751060 - MIR SINE MIR -63 145 74 1874 141 4 4 chr9 39112058 39112328 -78750299 + AluJb SINE Alu 43 312 0 765 253 25 0 chr9 39112408 39112610 -78750017 + Charlie8 DNA MER1_type 26 232 -2185 189 337 109 0 chr9 39113490 39113591 -78749036 + MIR SINE MIR 39 150 -58 404 218 53 8 chr9 39113790 39113923 -78748704 + MER113 DNA MER1_type? 28 166 -355 951 121 0 8 chr9 39114145 39114277 -78748350 + FLAM_C SINE Alu 1 131 -12 637 157 37 111 chr9 39114341 39114558 -78748069 + MER102a DNA MER1_type 128 328 -2 251 286 0 0 chr9 39114558 39114620 -78748007 + MER113 DNA MER1_type? 456 517 -4 180 355 18 55 chr9 39114858 39114968 -78747659 + L2 LINE L2 3125 3230 -42 391 288 9 9 chr9 39115620 39115731 -78746896 - MIR3 SINE MIR -90 118 8 1381 152 56 50 chr9 39116469 39116757 -78745870 + MER33 DNA MER1_type 1 293 -2292 2508 63 3 3 chr9 39116757 39117057 -78745570 - AluSp SINE Alu -13 300 1 1381 152 56 50 chr9 39117057 39117090 -78745537 + MER33 DNA MER1_type 293 324 0 216 135 0 0 chr9 39117204 39117241 -78745386 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 188 382 20 29 chr9 39117250 39117352 -78745275 - MIR SINE MIR -68 140 40 262 306 188 21 chr9 39118420 39118564 -78744063 - MIR SINE MIR -75 187 20 24 0 0 0 chr9 39118590 39118614 -78744013 + AT_rich Low_complexity Low_complexity 1 24 0 474 267 22 39 chr9 39119172 39119333 -78743294 + MIR SINE MIR 21 183 -60 371 267 27 20 chr9 39120303 39120449 -78742178 + CT-rich Low_complexity Low_complexity 1 147 0 245 320 39 0 chr9 39121037 39121115 -78741512 + MIR SINE MIR 63 143 -65 256 282 100 45 chr9 39125211 39125321 -78737306 + MIR3 SINE MIR 39 154 -54 23 0 0 0 chr9 39128907 39128930 -78733697 + GC_rich Low_complexity Low_complexity 1 23 0 238 253 22 66 chr9 39129412 39129503 -78733124 + MIR3 SINE MIR 117 203 -5 361 275 63 49 chr9 39130960 39131102 -78731525 - MIR3 SINE MIR -14 194 51 305 266 56 70 chr9 39131479 39131622 -78731005 - MIR3 SINE MIR -34 174 34 25 0 0 0 chr9 39132156 39132181 -78730446 + AT_rich Low_complexity Low_complexity 1 25 0 242 303 16 57 chr9 39132802 39132924 -78729703 + MIR3 SINE MIR 54 170 -38 261 0 0 0 chr9 39134777 39134806 -78727821 + (CA)n Simple_repeat Simple_repeat 2 30 0 321 26 0 0 chr9 39135266 39135304 -78727323 + (T)n Simple_repeat Simple_repeat 1 38 0 221 182 18 0 chr9 39141313 39141368 -78721259 + (TA)n Simple_repeat Simple_repeat 2 57 0 357 306 118 6 chr9 39143316 39143486 -78719141 - MER5A DNA MER1_type 0 189 1 2269 121 7 0 chr9 39143844 39144150 -78718477 - AluSx SINE Alu -4 308 1 182 304 80 27 chr9 39144250 39144362 -78718265 - L2 LINE L2 -266 3006 2889 2036 153 0 0 chr9 39144441 39144736 -78717891 - AluJb SINE Alu -17 295 1 272 243 0 93 chr9 39145202 39145309 -78717318 + MIR SINE MIR 102 198 -64 2443 97 0 0 chr9 39145381 39145690 -78716937 - AluSg SINE Alu 0 310 2 213 94 0 0 chr9 39146094 39146126 -78716501 + (CA)n Simple_repeat Simple_repeat 2 33 0 1855 144 32 3 chr9 39146317 39146601 -78716026 + AluJb SINE Alu 1 292 -20 2055 199 22 17 chr9 39146616 39147023 -78715604 - MER47B DNA MER2_type -8 410 2 340 266 195 18 chr9 39147126 39147295 -78715332 - L3 LINE CR1 -76 1501 1303 2247 116 0 0 chr9 39147658 39147950 -78714677 + AluSx SINE Alu 2 293 -19 386 257 40 54 chr9 39148512 39148660 -78713967 - MIR3 SINE MIR -6 202 57 600 252 87 44 chr9 39148689 39148895 -78713732 - MIR SINE MIR -36 226 12 581 287 144 42 chr9 39149594 39150072 -78712555 - L1ME4a LINE L1 -71 6050 5524 318 213 75 43 chr9 39150268 39150362 -78712265 - MIR SINE MIR -109 153 57 492 287 14 14 chr9 39150624 39150767 -78711860 - MIR3 SINE MIR -21 187 45 559 143 0 11 chr9 39150838 39150929 -78711698 - AluJb SINE Alu -39 273 184 935 132 0 59 chr9 39150929 39151081 -78711546 - FLAM_C SINE Alu 0 143 1 232 277 72 0 chr9 39151151 39151234 -78711393 + MER103 DNA DNA 1 89 -77 234 148 34 91 chr9 39152596 39152674 -78709953 + MIR SINE MIR 84 143 -65 232 239 13 138 chr9 39152714 39152873 -78709754 + MER5B DNA MER1_type 40 178 0 406 286 44 59 chr9 39152963 39153062 -78709565 + MIR3 SINE MIR 9 108 -100 2112 130 3 3 chr9 39153062 39153361 -78709266 + AluSx SINE Alu 2 300 -12 406 286 44 59 chr9 39153361 39153464 -78709163 + MIR3 SINE MIR 108 208 0 2521 76 0 0 chr9 39153858 39154159 -78708468 - AluSg SINE Alu -9 301 1 293 157 36 60 chr9 39154305 39154388 -78708239 - L1ME3A LINE L1 -227 5943 5863 1468 163 125 0 chr9 39154587 39154851 -78707776 + AluJb SINE Alu 1 297 -15 192 272 48 78 chr9 39155025 39155128 -78707499 + MIR SINE MIR 96 144 -64 632 258 11 26 chr9 39155458 39155648 -78706979 - MIR3 SINE MIR -6 202 16 365 240 124 41 chr9 39155926 39156047 -78706580 + L2 LINE L2 3142 3272 0 192 296 0 0 chr9 39156612 39156654 -78705973 + MIR SINE MIR 30 71 -137 1097 222 7 58 chr9 39156654 39156847 -78705780 + MIR SINE MIR 2 178 -84 888 193 0 24 chr9 39156847 39157013 -78705614 + FRAM SINE Alu 1 162 -4 1097 222 7 58 chr9 39157013 39157094 -78705533 + MIR SINE MIR 178 262 0 491 264 65 7 chr9 39157096 39157251 -78705376 + L2 LINE L2 2927 3090 -223 245 329 0 0 chr9 39157925 39157998 -78704629 + GA-rich Low_complexity Low_complexity 2 74 0 185 105 0 26 chr9 39158051 39158081 -78704546 + (TA)n Simple_repeat Simple_repeat 1 31 -6 2143 122 7 0 chr9 39158081 39158375 -78704252 - AluSx SINE Alu -16 296 1 185 105 0 26 chr9 39158375 39158382 -78704245 + (TA)n Simple_repeat Simple_repeat 31 37 0 1709 170 14 17 chr9 39158899 39159061 -78703566 - AluJb SINE Alu -19 293 131 216 0 0 0 chr9 39159061 39159085 -78703542 + (TTA)n Simple_repeat Simple_repeat 2 25 0 1709 170 14 17 chr9 39159085 39159216 -78703411 - AluJb SINE Alu -181 131 1 586 226 155 7 chr9 39159348 39159503 -78703124 + MER5A DNA MER1_type 4 181 -8 362 357 133 34 chr9 39159734 39160499 -78702128 + L2 LINE L2 1820 2660 -654 1790 158 3 20 chr9 39160560 39160858 -78701769 - AluJb SINE Alu -19 293 1 957 103 15 29 chr9 39161020 39161156 -78701471 + AluJo SINE Alu 1 134 -178 2127 81 33 4 chr9 39161256 39161565 -78701062 + AluY SINE Alu 1 317 0 1644 195 51 48 chr9 39161749 39161985 -78700642 + MER63B DNA MER1_type 1 235 -827 1663 189 10 16 chr9 39161985 39162292 -78700335 + AluJo SINE Alu 1 305 -7 1644 195 51 48 chr9 39162292 39162344 -78700283 + MER63B DNA MER1_type 235 285 -777 2334 104 0 3 chr9 39162344 39162642 -78699985 - AluSx SINE Alu -13 299 3 1644 195 51 48 chr9 39162642 39162787 -78699840 + MER63B DNA MER1_type 285 436 0 268 319 64 78 chr9 39162809 39163166 -78699461 + L2 LINE L2 2596 2947 -367 853 127 0 15 chr9 39163364 39163498 -78699129 - FLAM_C SINE Alu 0 133 2 492 82 0 124 chr9 39163811 39163843 -78698784 + L1MB3 LINE L1 5826 5860 -323 1496 193 10 43 chr9 39163843 39164148 -78698479 - AluJo SINE Alu -17 295 1 492 82 0 124 chr9 39164148 39164212 -78698415 + L1MB3 LINE L1 5860 5910 -273 1025 170 0 0 chr9 39164240 39164399 -78698228 + AluJb SINE Alu 145 303 -9 1406 170 0 0 chr9 39164399 39164640 -78697987 + L1MB3 LINE L1 5905 6145 -38 968 182 0 12 chr9 39164643 39164808 -78697819 - AluJb SINE Alu -16 296 134 2373 110 0 0 chr9 39164808 39165109 -78697518 - AluSx SINE Alu -11 301 1 252 86 0 0 chr9 39165151 39165186 -78697441 + (A)n Simple_repeat Simple_repeat 1 35 0 706 272 194 26 chr9 39215698 39216044 -78646583 - L2 LINE L2 -455 2859 2456 1909 140 27 3 chr9 39216246 39216538 -78646089 + AluJb SINE Alu 1 299 -13 630 221 72 67 chr9 39216757 39217289 -78645338 + L1ME LINE L1 782 1320 -4760 23 54 0 0 chr9 39217828 39217865 -78644762 + AT_rich Low_complexity Low_complexity 1 37 0 452 250 199 19 chr9 39218310 39218466 -78644161 + MIR3 SINE MIR 10 193 -15 981 214 41 19 chr9 39218835 39219355 -78643272 - L1MC4 LINE L1 0 8042 7420 814 121 0 24 chr9 39219526 39219650 -78642977 + AluSq/x SINE Alu 1 121 -191 755 223 112 0 chr9 39220980 39221177 -78641450 - MER58A DNA MER1_type -2 222 4 194 214 24 119 chr9 39223029 39223113 -78639514 - L2 LINE L2 -10 3262 3187 2279 95 10 0 chr9 39223123 39223419 -78639208 + AluSx SINE Alu 1 299 -13 4799 97 0 1 chr9 39223553 39224283 -78638344 - L1P LINE L1 -789 5357 4629 860 158 7 0 chr9 39224378 39224530 -78638097 + MSTD LTR MaLR 1 153 -243 2158 118 0 3 chr9 39224978 39225266 -78637361 - AluSg SINE Alu -23 287 1 472 262 112 54 chr9 39225279 39225573 -78637054 - L1MDb LINE L1 -3580 2960 2650 265 149 0 68 chr9 39225702 39225776 -78636851 + (CCCCCT)n Simple_repeat Simple_repeat 3 71 0 1661 175 22 0 chr9 39225828 39226102 -78636525 - AluJb SINE Alu -32 280 1 1297 201 4 8 chr9 39226337 39226581 -78636046 + AluJo SINE Alu 44 286 -26 353 280 125 15 chr9 39226638 39226838 -78635789 - L1MDb LINE L1 -4583 1957 1736 2379 96 40 6 chr9 39226940 39227294 -78635333 + L1PA8 LINE L1 5799 6164 -8 403 239 79 35 chr9 39227323 39227531 -78635096 - MIR SINE MIR -38 224 4 1726 140 75 4 chr9 39227822 39228101 -78634526 + AluJb SINE Alu 1 299 -13 391 242 44 11 chr9 39228880 39228971 -78633656 - L3 LINE CR1 -1466 111 18 294 340 57 25 chr9 39229360 39229519 -78633108 + MIR3 SINE MIR 34 197 -11 255 265 13 53 chr9 39230346 39230497 -78632130 + GA-rich Low_complexity Low_complexity 3 147 0 2122 66 4 7 chr9 39230600 39230871 -78631756 + AluY SINE Alu 3 272 -39 450 108 0 0 chr9 39230874 39230957 -78631670 + (CAGA)n Simple_repeat Simple_repeat 2 84 0 2445 90 0 3 chr9 39230971 39231283 -78631344 + AluSq SINE Alu 1 311 -2 697 120 5 68 chr9 39231595 39231786 -78630841 + (TCCCC)n Simple_repeat Simple_repeat 1 179 0 865 218 63 108 chr9 39231847 39232212 -78630415 - L1MDb LINE L1 -5163 1377 1039 2138 109 0 3 chr9 39232212 39232497 -78630130 - AluSq SINE Alu -29 284 1 865 218 63 108 chr9 39232497 39232613 -78630014 - L1MDb LINE L1 -5501 1039 919 376 354 135 29 chr9 39233126 39233437 -78629190 - L1MDb LINE L1 -6192 348 5 2380 69 3 16 chr9 39233545 39233850 -78628777 + AluSp SINE Alu 1 301 -12 207 318 0 0 chr9 39234185 39234270 -78628357 + T-rich Low_complexity Low_complexity 1 85 0 440 308 144 16 chr9 39234928 39235178 -78627449 - L3 LINE CR1 -1 1576 1295 2538 52 0 7 chr9 39236057 39236364 -78626263 - AluY SINE Alu -6 305 1 2310 108 0 0 chr9 39236621 39236917 -78625710 + AluSx SINE Alu 1 296 -16 3103 137 136 91 chr9 39237347 39237919 -78624708 - L1MC3 LINE L1 -15 7770 7075 273 270 0 14 chr9 39237919 39237993 -78624634 - MLT1F1 LTR MaLR -450 117 45 3103 137 136 91 chr9 39237993 39238208 -78624419 - L1MC3 LINE L1 -710 7075 6871 35 24 0 0 chr9 39238216 39238258 -78624369 + AT_rich Low_complexity Low_complexity 1 42 0 243 0 0 0 chr9 39238258 39238285 -78624342 + (ATTG)n Simple_repeat Simple_repeat 2 28 0 2160 99 3 0 chr9 39238287 39238569 -78624058 - AluSq SINE Alu -30 283 1 772 149 16 0 chr9 39238590 39238711 -78623916 - FLAM_C SINE Alu -10 123 1 192 77 0 0 chr9 39238711 39238737 -78623890 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 907 134 13 6 chr9 39238785 39238942 -78623685 - L1MC3 LINE L1 -923 6862 6705 1782 179 7 3 chr9 39238990 39239287 -78623340 - AluJb SINE Alu -14 298 1 268 265 122 0 chr9 39239325 39239423 -78623204 + MIR SINE MIR 104 213 -49 1426 194 13 45 chr9 39239579 39239893 -78622734 - AluJb SINE Alu -8 304 1 2138 69 31 17 chr9 39240178 39240467 -78622160 + AluY SINE Alu 1 293 -18 24 0 0 0 chr9 39240570 39240594 -78622033 + AT_rich Low_complexity Low_complexity 1 24 0 192 303 131 20 chr9 39240963 39241062 -78621565 - L2 LINE L2 -6 3266 3157 256 290 70 40 chr9 39241492 39241592 -78621035 + L2 LINE L2 3156 3258 -14 2368 113 0 0 chr9 39244275 39244586 -78618041 - AluSx SINE Alu -1 311 1 24 0 0 0 chr9 39245441 39245465 -78617162 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr9 39246295 39246320 -78616307 + AT_rich Low_complexity Low_complexity 1 25 0 223 359 66 50 chr9 39247444 39247625 -78615002 + L2 LINE L2 2872 3055 -217 432 111 28 14 chr9 39248451 39248523 -78614104 - AluSg/x SINE Alu -154 156 84 1358 174 5 0 chr9 39248523 39248742 -78613885 - AluJb SINE Alu -92 220 1 216 303 0 0 chr9 39249213 39249279 -78613348 - L2 LINE L2 0 3272 3207 509 335 49 33 chr9 39249343 39249588 -78613039 + MIR SINE MIR 8 256 -6 2200 70 0 14 chr9 39249883 39250207 -78612420 + AluY SINE Alu 1 320 0 1341 154 15 50 chr9 39250299 39250583 -78612044 + AluJo SINE Alu 33 307 0 242 322 82 7 chr9 39250654 39250800 -78611827 - L2 LINE L2 -223 3049 2893 190 330 22 22 chr9 39250831 39250922 -78611705 - L2 LINE L2 -498 2816 2726 1511 193 98 0 chr9 39250987 39251303 -78611324 - MER7A DNA MER2_type 0 346 2 1576 153 26 71 chr9 39251417 39251725 -78610902 + AluJb SINE Alu 5 298 -14 24 0 0 0 chr9 39251784 39251808 -78610819 + AT_rich Low_complexity Low_complexity 1 24 0 246 130 19 37 chr9 39252195 39252249 -78610378 + LTR23 LTR ERV1 1 53 -384 21 0 0 0 chr9 39252249 39252270 -78610357 + AT_rich Low_complexity Low_complexity 1 21 0 834 201 40 7 chr9 39252276 39252425 -78610202 - AluJ SINE Alu -36 276 123 55 40 0 0 chr9 39252425 39252501 -78610126 + AT_rich Low_complexity Low_complexity 1 76 0 763 169 0 0 chr9 39252512 39252636 -78609991 - AluJ SINE Alu -185 127 4 821 171 145 104 chr9 39252647 39252785 -78609842 - AluJo SINE Alu -22 290 159 2224 83 3 0 chr9 39252785 39253074 -78609553 - AluSp SINE Alu -23 290 1 821 171 145 104 chr9 39253074 39253204 -78609423 - AluJo SINE Alu -153 159 11 872 171 14 113 chr9 39253217 39253510 -78609117 + LTR23 LTR ERV1 42 305 -132 2283 61 61 0 chr9 39253510 39253804 -78608823 + AluSq SINE Alu 1 312 -1 305 193 0 0 chr9 39253848 39253905 -78608722 + AluJ/FLAM SINE Alu 7 63 -239 750 146 14 7 chr9 39253935 39254079 -78608548 + LTR23 LTR ERV1 293 437 0 194 271 57 14 chr9 39255412 39255482 -78607145 + MIR3 SINE MIR 125 197 -11 224 297 14 0 chr9 39255517 39255591 -78607036 + MIR3 SINE MIR 10 84 -124 268 267 44 33 chr9 39255697 39255787 -78606840 + MIR3 SINE MIR 111 201 -7 2130 104 3 0 chr9 39256972 39257269 -78605358 + AluSg SINE Alu 1 298 -12 337 353 38 23 chr9 39257296 39257429 -78605198 + MIR3 SINE MIR 31 165 -43 426 39 0 0 chr9 39257505 39257557 -78605070 + (TG)n Simple_repeat Simple_repeat 2 53 0 228 339 28 28 chr9 39258753 39258862 -78603765 - L2 LINE L2 0 3272 3164 1820 139 18 0 chr9 39259183 39259464 -78603163 - AluSx SINE Alu -26 286 1 1651 181 0 31 chr9 39259472 39259765 -78602862 - AluJo SINE Alu -20 292 9 2481 63 7 0 chr9 39260302 39260603 -78602024 + AluY SINE Alu 1 303 -8 2321 98 3 3 chr9 39260607 39260914 -78601713 + AluSx SINE Alu 1 307 -5 368 227 128 0 chr9 39261615 39261756 -78600871 - L1MC5 LINE L1 -58 7903 7745 190 200 0 46 chr9 39261757 39261822 -78600805 + (TATG)n Simple_repeat Simple_repeat 2 63 0 872 152 0 0 chr9 39261852 39261984 -78600643 + MER2 DNA MER2_type 4 135 -210 1079 87 54 27 chr9 39261991 39262100 -78600527 + MER30 DNA MER1_type 3 120 -110 2200 83 10 14 chr9 39262100 39262390 -78600237 + AluSg SINE Alu 1 289 -21 1079 87 54 27 chr9 39262390 39262464 -78600163 + MER30 DNA MER1_type 120 191 -39 458 160 76 25 chr9 39262477 39262596 -78600031 + MER2 DNA MER2_type 136 260 -85 1138 178 0 0 chr9 39262615 39262800 -78599827 - AluSq SINE Alu -9 304 120 34 0 0 0 chr9 39262800 39262834 -78599793 + AT_rich Low_complexity Low_complexity 1 34 0 2316 101 0 0 chr9 39262834 39263132 -78599495 - AluSx SINE Alu -14 298 1 947 123 0 0 chr9 39263137 39263267 -78599360 - AluSq SINE Alu -183 130 1 734 212 103 35 chr9 39263340 39263651 -78598976 - L1MC5 LINE L1 -320 7641 7310 2392 100 0 3 chr9 39263958 39264269 -78598358 - AluSp SINE Alu -3 310 1 332 191 11 11 chr9 39264270 39264359 -78598268 - L1MC5 LINE L1 -1876 5932 5844 201 167 42 42 chr9 39264434 39264482 -78598145 + L2 LINE L2 3266 3313 0 23 33 0 0 chr9 39264524 39264554 -78598073 + AT_rich Low_complexity Low_complexity 1 30 0 194 0 0 37 chr9 39265640 39265667 -78596960 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1335 145 31 86 chr9 39265728 39266018 -78596609 - AluJb SINE Alu -38 274 1 650 161 45 0 chr9 39266029 39266167 -78596460 - FLAM_C SINE Alu 0 143 1 21 0 0 0 chr9 39267938 39267959 -78594668 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 39268073 39268094 -78594533 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr9 39270889 39270925 -78591702 + AT_rich Low_complexity Low_complexity 1 36 0 22 88 0 0 chr9 39273072 39273129 -78589498 + AT_rich Low_complexity Low_complexity 1 57 0 23 54 0 0 chr9 39273418 39273455 -78589172 + AT_rich Low_complexity Low_complexity 1 37 0 25 0 0 0 chr9 39276097 39276122 -78586505 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr9 39276368 39276397 -78586230 + AT_rich Low_complexity Low_complexity 1 29 0 287 312 72 24 chr9 39277432 39277557 -78585070 - L2 LINE L2 0 3272 3142 2197 167 21 12 chr9 39279905 39280324 -78582303 + L1M2 LINE L1 5299 5721 -591 21 36 0 0 chr9 39281637 39281665 -78580962 + AT_rich Low_complexity Low_complexity 1 28 0 711 71 10 0 chr9 39282442 39282540 -78580087 + HY3 scRNA scRNA 2 100 -1 1693 145 7 35 chr9 39282545 39282827 -78579800 + AluJo SINE Alu 14 287 -25 2142 117 3 0 chr9 39282909 39283209 -78579418 + AluSx SINE Alu 1 301 -11 181 312 0 75 chr9 39283210 39283303 -78579324 - MIR3 SINE MIR -28 180 95 509 179 0 0 chr9 39283511 39283595 -78579032 + AluJb SINE Alu 42 125 -187 1564 217 88 45 chr9 39283860 39284394 -78578233 - L1ME1 LINE L1 -26 6209 5653 913 131 0 8 chr9 39284406 39284536 -78578091 + AluSq/x SINE Alu 1 129 -183 1630 106 0 0 chr9 39284536 39284744 -78577883 + AluSc SINE Alu 1 208 -101 1176 130 12 0 chr9 39284877 39285046 -78577581 + AluSg/x SINE Alu 140 310 0 602 226 99 13 chr9 39285053 39285762 -78576865 - L1ME1 LINE L1 -593 5642 4725 1946 129 0 11 chr9 39285790 39286068 -78576559 + AluSx SINE Alu 1 275 -37 602 26 0 13 chr9 39286072 39286149 -78576478 + (TAGA)n Simple_repeat Simple_repeat 1 76 0 232 91 45 0 chr9 39286186 39286230 -78576397 + A-rich Low_complexity Low_complexity 3 48 0 1133 220 80 19 chr9 39286230 39286494 -78576133 - AluJb SINE Alu -30 282 3 1991 230 133 26 chr9 39286495 39287300 -78575327 - L1ME1 LINE L1 -1483 4732 3842 1757 103 49 0 chr9 39287300 39287563 -78575064 - MER75 DNA T2_type 0 514 239 1954 231 82 40 chr9 39287577 39287745 -78574882 - L1ME1 LINE L1 -2652 3563 3404 2256 73 0 7 chr9 39287745 39288032 -78574595 + AluSg SINE Alu 1 285 -25 1954 231 82 40 chr9 39288032 39288621 -78574006 - L1ME1 LINE L1 -2811 3404 2774 3146 253 72 32 chr9 39288704 39288901 -78573726 - L1ME1 LINE L1 -5148 1248 1060 552 167 167 0 chr9 39288901 39289015 -78573612 - FLAM_C SINE Alu 0 133 1 3146 253 72 32 chr9 39289015 39289984 -78572643 - L1ME1 LINE L1 -5336 1060 35 834 161 0 0 chr9 39290247 39290371 -78572256 + FLAM_C SINE Alu 1 124 -19 301 259 83 19 chr9 39290410 39290518 -78572109 - L2 LINE L2 -19 3294 3180 23 0 0 0 chr9 39290578 39290601 -78572026 + AT_rich Low_complexity Low_complexity 1 23 0 1536 167 23 30 chr9 39291426 39291725 -78570902 + AluJo SINE Alu 16 312 0 233 244 189 22 chr9 39292013 39292103 -78570524 + MER117 DNA MER1_type 2 106 -91 26 0 0 0 chr9 39293054 39293080 -78569547 + AT_rich Low_complexity Low_complexity 1 26 0 1363 142 14 14 chr9 39293090 39293309 -78569318 - AluJo SINE Alu -54 258 40 21 36 0 0 chr9 39295437 39295465 -78567162 + AT_rich Low_complexity Low_complexity 1 28 0 258 339 102 0 chr9 39295534 39295661 -78566966 + MIR SINE MIR 56 195 -67 2048 115 13 26 chr9 39295661 39295966 -78566661 + AluSx SINE Alu 1 301 -11 258 182 127 0 chr9 39295966 39296021 -78566606 - L1MC/D LINE L1 -773 5586 5525 1867 113 84 0 chr9 39296486 39296761 -78565866 + AluSx SINE Alu 1 298 -14 1211 178 21 117 chr9 39297053 39297379 -78565248 + AluYb8 SINE Alu 1 295 -23 23 33 0 0 chr9 39297503 39297533 -78565094 + AT_rich Low_complexity Low_complexity 1 30 0 243 0 0 0 chr9 39297686 39297713 -78564914 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2237 67 14 0 chr9 39297715 39298000 -78564627 - AluY SINE Alu -20 291 3 233 281 16 8 chr9 39298169 39298290 -78564337 + (TA)n Simple_repeat Simple_repeat 2 123 0 187 206 0 0 chr9 39298582 39298616 -78564011 - MER5B DNA MER1_type -50 128 95 1971 124 18 0 chr9 39298689 39298999 -78563628 + AluSg SINE Alu 1 315 0 2658 142 78 8 chr9 39299268 39299753 -78562874 + L1MC3 LINE L1 7244 7762 -23 275 205 18 27 chr9 39300039 39300151 -78562476 + GA-rich Low_complexity Low_complexity 2 112 0 180 0 0 0 chr9 39300819 39300839 -78561788 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 335 200 0 43 chr9 39301687 39301757 -78560870 + L2 LINE L2 3246 3312 -1 23 33 0 0 chr9 39302695 39302725 -78559902 + AT_rich Low_complexity Low_complexity 1 30 0 778 278 53 29 chr9 39303006 39303348 -78559279 + L1MC3 LINE L1 5653 6002 -1783 * 1822 189 81 10 chr9 39303049 39303467 -78559160 + L1MB7 LINE L1 5694 6141 -43 30 0 0 0 chr9 39303468 39303498 -78559129 + AT_rich Low_complexity Low_complexity 1 30 0 751 157 9 0 chr9 39303498 39303613 -78559014 - FLAM_C SINE Alu -17 116 1 2039 117 3 46 chr9 39303970 39304295 -78558332 - AluSx SINE Alu -1 311 1 738 232 7 0 chr9 39304470 39304621 -78558006 + FAM SINE Alu 1 152 -33 272 192 41 14 chr9 39305177 39305250 -78557377 + MER116 DNA Mariner 6 80 0 583 249 135 21 chr9 39305325 39305518 -78557109 - MIR SINE MIR -42 220 6 297 0 0 0 chr9 39306317 39306350 -78556277 + (TTG)n Simple_repeat Simple_repeat 1 33 0 1564 193 90 44 chr9 39307081 39307516 -78555111 - MLT1C LTR MaLR 0 467 13 243 0 0 0 chr9 39307552 39307579 -78555048 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr9 39307827 39307848 -78554779 + AT_rich Low_complexity Low_complexity 1 21 0 2203 136 3 12 chr9 39308840 39309178 -78553449 - MER1B DNA MER1_type -1 336 2 496 177 73 0 chr9 39309398 39309494 -78553133 + MER2 DNA MER2_type 243 345 0 355 178 39 132 chr9 39309636 39309765 -78552862 - L1MDa LINE L1 -4940 1600 1484 509 152 0 20 chr9 39309766 39309865 -78552762 - AluJ/FRAM SINE Alu 0 312 216 1234 185 0 44 chr9 39309965 39310214 -78552413 + AluJb SINE Alu 75 312 0 199 330 22 22 chr9 39310471 39310562 -78552065 - L2 LINE L2 -498 2816 2726 1824 165 58 0 chr9 39310627 39310955 -78551672 - MER7A DNA MER2_type 0 346 2 246 62 0 0 chr9 39311013 39311045 -78551582 + (T)n Simple_repeat Simple_repeat 1 32 0 1629 169 13 35 chr9 39311083 39311396 -78551231 + AluJb SINE Alu 1 306 -6 333 0 0 0 chr9 39311396 39311433 -78551194 + (TA)n Simple_repeat Simple_repeat 2 38 0 24 0 0 0 chr9 39311453 39311477 -78551150 + AT_rich Low_complexity Low_complexity 1 24 0 871 110 0 0 chr9 39312046 39312164 -78550463 - FLAM_C SINE Alu -15 118 1 808 207 37 24 chr9 39312169 39312333 -78550294 - AluJ SINE Alu -18 294 129 49 32 0 0 chr9 39312333 39312396 -78550231 + AT_rich Low_complexity Low_complexity 1 63 0 332 227 0 0 chr9 39312405 39312471 -78550156 - AluJo SINE Alu -2 300 235 668 242 0 25 chr9 39312471 39312628 -78549999 - AluJo SINE Alu -159 153 1 1071 172 50 38 chr9 39312628 39312889 -78549738 + LTR23 LTR ERV1 42 305 -132 456 168 30 50 chr9 39312889 39312990 -78549637 + AluJ/FLAM SINE Alu 1 99 -213 725 123 34 41 chr9 39312995 39313141 -78549486 + LTR23 LTR ERV1 293 437 0 263 338 61 20 chr9 39314586 39314734 -78547893 + MIR3 SINE MIR 31 184 -24 256 263 25 38 chr9 39314742 39314822 -78547805 + MIR3 SINE MIR 123 201 -7 2336 56 3 3 chr9 39315563 39315850 -78546777 + AluSp SINE Alu 3 289 -24 21 0 0 0 chr9 39316280 39316301 -78546326 + AT_rich Low_complexity Low_complexity 1 21 0 358 349 30 8 chr9 39316311 39316443 -78546184 + MIR3 SINE MIR 31 165 -43 268 369 8 76 chr9 39317724 39317960 -78544667 - L2 LINE L2 0 3272 3053 738 154 42 14 chr9 39318143 39318286 -78544341 - FRAM SINE Alu -11 165 19 828 205 105 10 chr9 39318828 39319028 -78543599 - MER58A DNA MER1_type -2 222 4 207 366 74 14 chr9 39320066 39320282 -78542345 + L2 LINE L2 2157 2385 -929 304 207 126 46 chr9 39322139 39322226 -78540401 - L2 LINE L2 -10 3262 3169 494 200 8 46 chr9 39322289 39322419 -78540208 - FLAM_A SINE Alu -1 141 17 265 267 12 0 chr9 39323379 39323465 -78539162 - L1MC5 LINE L1 -58 7903 7817 1701 151 60 10 chr9 39323477 39323776 -78538851 + MER2 DNA MER2_type 1 314 -31 324 0 0 0 chr9 39323790 39323826 -78538801 + (TG)n Simple_repeat Simple_repeat 1 36 0 686 215 165 30 chr9 39323840 39324203 -78538424 - L1MC5 LINE L1 -240 7721 7310 2293 81 0 3 chr9 39324521 39324854 -78537773 - AluSq SINE Alu 0 332 1 2468 69 0 0 chr9 39324933 39325224 -78537403 - AluSg SINE Alu -19 291 1 2099 122 0 29 chr9 39325379 39325691 -78536936 - AluSx SINE Alu -9 303 1 944 201 77 10 chr9 39326624 39326818 -78535809 - AluJb SINE Alu -5 307 101 359 302 8 31 chr9 39326864 39326993 -78535634 - MIR3 SINE MIR -26 182 57 587 251 82 43 chr9 39327022 39327229 -78535398 - MIR SINE MIR -36 226 12 34 0 0 0 chr9 39327684 39327718 -78534909 + AT_rich Low_complexity Low_complexity 1 34 0 1424 123 5 0 chr9 39327718 39327922 -78534705 - AluSg/x SINE Alu -22 290 86 564 318 80 4 chr9 39328374 39328648 -78533979 - L1ME LINE L1 -303 5818 5524 322 243 75 37 chr9 39328831 39328938 -78533689 - MIR SINE MIR -95 167 57 301 348 28 0 chr9 39329151 39329292 -78533335 - MIR3 SINE MIR -4 204 60 1734 155 23 19 chr9 39329320 39329630 -78532997 + AluJb SINE Alu 1 311 -1 1811 128 12 79 chr9 39329701 39330030 -78532597 - AluJb SINE Alu -3 309 3 192 77 0 0 chr9 39330308 39330334 -78532293 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 193 411 0 0 chr9 39330503 39330559 -78532068 - L2 LINE L2 -88 3184 3129 1755 150 41 7 chr9 39330611 39330904 -78531723 + AluSx SINE Alu 1 303 -9 213 109 18 109 chr9 39331697 39331752 -78530875 + MIR SINE MIR 86 135 -73 1948 110 43 3 chr9 39331857 39332139 -78530488 + AluSg SINE Alu 1 293 -17 389 311 57 11 chr9 39332383 39332560 -78530067 + MIR3 SINE MIR 9 193 -15 233 177 83 146 chr9 39333125 39333188 -78529439 - L1ME3A LINE L1 -218 5952 5895 1990 139 7 7 chr9 39333188 39333497 -78529130 - AluSx SINE Alu -3 309 1 233 177 83 146 chr9 39333497 39333529 -78529098 - L1ME3A LINE L1 -275 5895 5863 1723 185 0 0 chr9 39333729 39334021 -78528606 + AluJb SINE Alu 1 292 -20 256 250 0 0 chr9 39334197 39334253 -78528374 + MIR SINE MIR 97 152 -56 592 228 21 52 chr9 39334627 39334820 -78527807 - MIR3 SINE MIR -6 202 16 381 277 46 39 chr9 39335095 39335225 -78527402 + L2 LINE L2 3142 3272 0 204 286 0 20 chr9 39335789 39335836 -78526791 + MIR SINE MIR 26 71 -137 1071 230 7 68 chr9 39335836 39336029 -78526598 + MIR SINE MIR 2 174 -88 956 206 0 0 chr9 39336029 39336194 -78526433 + FRAM SINE Alu 1 165 -1 1071 230 7 68 chr9 39336194 39336278 -78526349 + MIR SINE MIR 174 262 0 500 283 73 17 chr9 39336260 39336437 -78526190 + L2 LINE L2 2908 3094 -219 * 2149 97 7 32 chr9 39337135 39337445 -78525182 + AluSq SINE Alu 1 302 -11 599 200 8 8 chr9 39337599 39337724 -78524903 + MER63 DNA MER1_type 745 869 -193 1546 174 19 0 chr9 39337732 39337996 -78524631 + AluJo SINE Alu 1 269 -43 216 182 0 0 chr9 39337997 39338041 -78524586 + (CAAA)n Simple_repeat Simple_repeat 3 46 0 497 132 0 0 chr9 39338104 39338172 -78524455 - AluSc SINE Alu -112 197 130 613 217 0 0 chr9 39338172 39338292 -78524335 + MER63 DNA MER1_type 941 1060 0 270 327 59 68 chr9 39338314 39338745 -78523882 + L2 LINE L2 2596 3017 -255 2102 114 0 10 chr9 39338808 39339097 -78523530 - AluSq SINE Alu -27 286 1 454 305 29 29 chr9 39339773 39339947 -78522680 - MIR3 SINE MIR -3 205 32 2024 124 0 0 chr9 39340011 39340328 -78522299 - AluSg SINE Alu 0 317 1 1734 184 96 25 chr9 39340422 39340542 -78522085 + MLT1C LTR MaLR 1 111 -356 2064 144 0 0 chr9 39340542 39340840 -78521787 - AluSx SINE Alu -14 298 1 1734 184 96 25 chr9 39340840 39341155 -78521472 + MLT1C LTR MaLR 111 467 0 986 269 123 19 chr9 39341693 39342068 -78520559 - LTR33 LTR ERVL -6 515 102 1479 199 30 149 chr9 39342071 39342740 -78519887 + L1 LINE L1 4031 4619 -1527 3616 205 40 19 chr9 39342743 39343557 -78519070 + L1MB5 LINE L1 4421 5216 -958 1916 168 0 0 chr9 39343557 39343860 -78518767 + AluJb SINE Alu 1 303 -9 3616 205 40 19 chr9 39343860 39344409 -78518218 + L1MB5 LINE L1 5216 5826 -348 1509 206 31 0 chr9 39344409 39344695 -78517932 + AluJo SINE Alu 11 305 -7 3616 205 40 19 chr9 39344695 39344723 -78517904 + L1MB5 LINE L1 5826 5852 -322 292 256 49 12 chr9 39344823 39344905 -78517722 + L2 LINE L2 2810 2894 -420 27 0 0 0 chr9 39344905 39344932 -78517695 + AT_rich Low_complexity Low_complexity 1 27 0 2392 78 0 0 chr9 39344984 39345277 -78517350 - AluY SINE Alu -18 293 1 508 308 142 19 chr9 39345294 39345612 -78517015 + L2 LINE L2 2911 3267 -46 204 213 0 0 chr9 39345916 39345977 -78516650 + T-rich Low_complexity Low_complexity 1 61 0 2596 52 3 0 chr9 39347684 39347994 -78514633 + AluY SINE Alu 1 311 0 860 171 88 78 chr9 39348022 39348227 -78514400 + MER20 DNA MER1_type 13 219 0 21 57 0 0 chr9 39348247 39348282 -78514345 + AT_rich Low_complexity Low_complexity 1 35 0 249 83 0 0 chr9 39349933 39349969 -78512658 + (TG)n Simple_repeat Simple_repeat 2 37 0 29 78 0 0 chr9 39350553 39350617 -78512010 + AT_rich Low_complexity Low_complexity 1 64 0 2151 106 3 0 chr9 39352330 39352637 -78509990 + AluSq SINE Alu 1 308 0 21 36 0 0 chr9 39352843 39352871 -78509756 + AT_rich Low_complexity Low_complexity 1 28 0 2255 91 7 7 chr9 39354462 39354760 -78507867 + AluSx SINE Alu 1 298 -14 189 0 0 0 chr9 39354880 39354901 -78507726 + (T)n Simple_repeat Simple_repeat 1 21 0 613 146 0 39 chr9 39354914 39355017 -78507610 + AluSc SINE Alu 194 292 -17 782 228 97 10 chr9 39355116 39355322 -78507305 + MER58A DNA MER1_type 1 224 0 2234 112 0 3 chr9 39356196 39356491 -78506136 + AluSx SINE Alu 1 294 -18 185 250 125 0 chr9 39357809 39357865 -78504762 - L2 LINE L2 0 3272 3210 335 269 86 21 chr9 39357885 39358071 -78504556 + L1MB4 LINE L1 4382 4579 -1567 450 0 0 0 chr9 39358266 39358316 -78504311 + (TG)n Simple_repeat Simple_repeat 2 51 0 219 139 0 0 chr9 39358932 39358968 -78503659 + (TATG)n Simple_repeat Simple_repeat 2 37 0 237 186 0 0 chr9 39358992 39359035 -78503592 + L1MB4 LINE L1 5561 5603 -518 349 137 0 0 chr9 39359039 39359090 -78503537 + MER66A LTR ERV1 287 337 -141 2021 202 28 12 chr9 39359113 39359608 -78503019 + L1MB4 LINE L1 5676 6178 -2 910 274 58 66 chr9 39360359 39360845 -78501782 + L1ME1 LINE L1 35 516 -5880 2286 234 97 42 chr9 39361044 39362687 -78499940 + L1ME1 LINE L1 3312 4863 -1372 2333 70 7 3 chr9 39362687 39362985 -78499642 + AluY SINE Alu 1 299 -12 2286 234 97 42 chr9 39362985 39363731 -78498896 + L1ME1 LINE L1 4863 5935 -300 1802 145 36 10 chr9 39363731 39364035 -78498592 - AluSx SINE Alu 0 312 1 2286 234 97 42 chr9 39364035 39364315 -78498312 + L1ME1 LINE L1 5935 6198 -37 1311 181 86 38 chr9 39364315 39364607 -78498020 - AluJb SINE Alu -6 306 1 2171 111 7 3 chr9 39364774 39365072 -78497555 - AluSx SINE Alu -12 300 2 5446 162 99 5 chr9 39365264 39366362 -78496265 - Tigger3b DNA MER2_type -1 1230 29 27 0 0 0 chr9 39366524 39366551 -78496076 + AT_rich Low_complexity Low_complexity 1 27 0 281 229 195 34 chr9 39366566 39366684 -78495943 + L2 LINE L2 3177 3313 0 1784 140 6 40 chr9 39366862 39367184 -78495443 - AluSx SINE Alu -1 311 1 236 222 37 19 chr9 39368246 39368300 -78494327 + MER5B DNA MER1_type 4 58 -120 181 288 27 0 chr9 39368377 39368450 -78494177 + MER5B DNA MER1_type 98 172 -6 811 190 117 6 chr9 39368450 39368629 -78493998 + MER58 DNA MER1_type 1 199 -2221 651 246 0 0 chr9 39369044 39369182 -78493445 - Tigger5 DNA MER2_type 0 2323 2186 2058 106 0 48 chr9 39369795 39370107 -78492520 - AluSx SINE Alu -15 297 1 317 311 135 46 chr9 39370203 39370463 -78492164 - MLT1K LTR MaLR -163 425 143 26 30 0 0 chr9 39370658 39370691 -78491936 + AT_rich Low_complexity Low_complexity 1 33 0 2355 148 22 61 chr9 39370877 39371384 -78491243 - L1MA6 LINE L1 0 6300 5814 380 232 80 14 chr9 39371395 39371533 -78491094 + CT-rich Low_complexity Low_complexity 5 151 0 2142 116 7 0 chr9 39371537 39371831 -78490796 - AluSc SINE Alu -13 296 1 2223 126 42 5 chr9 39371832 39372212 -78490415 - L1MA6 LINE L1 -475 5825 5432 23 0 0 0 chr9 39372276 39372299 -78490328 + AT_rich Low_complexity Low_complexity 1 23 0 2223 58 0 11 chr9 39372362 39372637 -78489990 - AluY SINE Alu -39 272 1 21 36 0 0 chr9 39374818 39374846 -78487781 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr9 39376265 39376287 -78486340 + AT_rich Low_complexity Low_complexity 1 22 0 28 95 0 0 chr9 39376880 39376964 -78485663 + AT_rich Low_complexity Low_complexity 1 84 0 201 147 0 0 chr9 39380188 39380222 -78482405 + (A)n Simple_repeat Simple_repeat 1 34 0 21 57 0 0 chr9 39380374 39380409 -78482218 + AT_rich Low_complexity Low_complexity 1 35 0 203 195 24 24 chr9 39381657 39381698 -78480929 + L2 LINE L2 3032 3072 -200 208 326 0 42 chr9 39381825 39381920 -78480707 - L2 LINE L2 -430 2884 2794 435 298 42 46 chr9 39382085 39382323 -78480304 - L2 LINE L2 -882 2432 2196 324 149 0 15 chr9 39382572 39382639 -78479988 - L1MA8 LINE L1 -3 6288 6223 340 241 98 54 chr9 39382698 39382810 -78479817 - MER8 DNA MER2_type -122 117 1 1670 182 26 2 chr9 39382810 39383152 -78479475 - L1MA8 LINE L1 -28 6143 5871 1435 179 57 37 chr9 39383568 39383885 -78478742 + AluJo SINE Alu 1 323 0 189 369 0 36 chr9 39384346 39384430 -78478197 + L3 LINE CR1 1478 1558 -19 1952 99 68 10 chr9 39385400 39385692 -78476935 - AluSc SINE Alu 0 309 1 422 341 115 10 chr9 39385906 39386114 -78476513 + MIR SINE MIR 2 231 -31 321 267 0 27 chr9 39386147 39386222 -78476405 - MER81 DNA DNA 0 114 42 2209 125 3 3 chr9 39386234 39386545 -78476082 - AluSq SINE Alu -2 311 1 23 33 0 0 chr9 39387113 39387143 -78475484 + AT_rich Low_complexity Low_complexity 1 30 0 24 32 0 0 chr9 39389815 39389846 -78472781 + AT_rich Low_complexity Low_complexity 1 31 0 2166 69 0 11 chr9 39391242 39391517 -78471110 + AluY SINE Alu 1 272 -39 22 0 0 0 chr9 39391581 39391603 -78471024 + AT_rich Low_complexity Low_complexity 1 22 0 664 183 44 0 chr9 39391667 39391804 -78470823 + L1M2 LINE L1 5432 5574 -726 328 188 12 12 chr9 39391966 39392046 -78470581 - HAL1 LINE L1 -296 2211 2132 1990 155 3 0 chr9 39392089 39392392 -78470235 - AluSx SINE Alu -8 304 1 229 200 15 31 chr9 39392393 39392458 -78470169 - HAL1 LINE L1 -464 2043 1980 * 572 262 14 0 chr9 39392457 39392602 -78470025 - HAL1 LINE L1 -939 1568 1422 741 241 0 21 chr9 39392662 39392853 -78469774 - AluJo SINE Alu -14 298 112 1109 127 0 0 chr9 39393016 39393182 -78469445 + AluSg/x SINE Alu 144 309 -1 198 91 0 0 chr9 39393191 39393224 -78469403 + (TA)n Simple_repeat Simple_repeat 1 33 0 676 191 211 10 chr9 39394924 39395118 -78467509 - MER46A DNA MER2_type -3 233 1 2360 174 193 25 chr9 39395249 39395851 -78466776 - MER44D DNA MER2_type -2 703 1 1355 233 38 27 chr9 39396521 39396886 -78465741 + Charlie1a DNA MER1_type 3 371 -1084 2037 187 150 35 chr9 39396902 39397155 -78465472 + Charlie1a DNA MER1_type 793 1016 -1745 2553 130 142 6 chr9 39397155 39397649 -78464978 - MER34B LTR ERV1 -2 563 3 2037 187 150 35 chr9 39397649 39397989 -78464638 + Charlie1a DNA MER1_type 1016 1454 -1 1077 152 21 26 chr9 39397992 39398183 -78464444 + MSTB LTR MaLR 221 410 -16 255 285 0 114 chr9 39398399 39398522 -78464105 + MIR SINE MIR 86 194 -68 229 366 42 7 chr9 39398581 39398710 -78463917 - L2 LINE L2 -731 2583 2447 1933 116 29 32 chr9 39398710 39399021 -78463606 + AluJb SINE Alu 1 310 -2 229 366 42 7 chr9 39399021 39399033 -78463594 - L2 LINE L2 -867 2447 2437 4726 208 114 39 chr9 39399344 39400815 -78461812 - MER45R DNA AcHobo 0 1581 1 242 224 342 0 chr9 39404347 39404499 -78458128 + MIR SINE MIR 47 250 -12 21 0 0 0 chr9 39404537 39404558 -78458069 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr9 39404866 39404889 -78457738 + AT_rich Low_complexity Low_complexity 1 23 0 1852 185 0 0 chr9 39406827 39407119 -78455508 + AluJo SINE Alu 1 292 -20 1371 155 91 38 chr9 39407656 39407795 -78454832 - AluJb SINE Alu -33 279 149 2590 55 0 0 chr9 39407795 39408103 -78454524 - AluY SINE Alu -3 308 1 1371 155 91 38 chr9 39408103 39408228 -78454399 - AluJb SINE Alu -163 149 1 320 276 86 43 chr9 39408330 39408446 -78454181 + L2 LINE L2 3143 3263 -9 2497 60 0 0 chr9 39408663 39408961 -78453666 - AluY SINE Alu -13 298 1 532 324 84 44 chr9 39409174 39409616 -78453011 - L2 LINE L2 -230 3083 2606 1670 165 22 4 chr9 39409616 39409883 -78452744 + AluJb SINE Alu 40 311 -1 532 324 84 44 chr9 39409883 39410053 -78452574 - L2 LINE L2 -707 2606 2444 854 154 256 38 chr9 39410229 39410495 -78452132 + MER33 DNA MER1_type 1 324 0 2217 100 30 0 chr9 39410647 39410946 -78451681 + AluSq SINE Alu 1 308 -5 22 0 0 0 chr9 39411041 39411063 -78451564 + AT_rich Low_complexity Low_complexity 1 22 0 1467 184 124 121 chr9 39411177 39411823 -78450804 + L1MC5 LINE L1 7065 7716 -245 2013 135 0 0 chr9 39411823 39412111 -78450516 - AluSx SINE Alu -24 288 1 1467 184 124 121 chr9 39412111 39412310 -78450317 + L1MC5 LINE L1 7716 7913 -48 251 204 41 0 chr9 39412657 39412706 -78449921 - L1ME3A LINE L1 -75 6095 6045 228 67 0 0 chr9 39412733 39412763 -78449864 + (A)n Simple_repeat Simple_repeat 1 30 0 691 251 17 11 chr9 39413036 39413255 -78449372 - L1ME3 LINE L1 -315 5855 5656 939 174 87 5 chr9 39413262 39413457 -78449170 + MER58A DNA MER1_type 1 211 -13 2504 70 0 0 chr9 39413462 39413763 -78448864 + AluY SINE Alu 1 301 -10 518 249 46 24 chr9 39413938 39414211 -78448416 - L1ME3 LINE L1 -747 5399 5164 295 174 0 0 chr9 39414274 39414320 -78448307 - MER75 DNA T2_type 0 504 459 2280 122 3 0 chr9 39414568 39414879 -78447748 - AluSx SINE Alu 0 312 1 489 296 160 21 chr9 39414884 39415315 -78447312 - L1ME3 LINE L1 -953 5193 4697 981 259 114 42 chr9 39415672 39415874 -78446753 - L1ME LINE L1 -344 5818 5632 2297 98 0 25 chr9 39415874 39416191 -78446436 - AluSq SINE Alu -4 309 1 981 259 114 42 chr9 39416191 39416644 -78445983 - L1ME LINE L1 -530 5632 5128 489 283 133 17 chr9 39416644 39416824 -78445803 + MIR SINE MIR 56 256 -6 234 286 78 0 chr9 39417430 39417507 -78445120 + L1ME LINE L1 347 429 -5987 587 196 0 9 chr9 39417599 39417711 -78444916 + FLAM_C SINE Alu 1 111 -32 211 0 88 0 chr9 39417721 39417755 -78444872 + A-rich Low_complexity Low_complexity 3 39 0 643 329 118 0 chr9 39417755 39418044 -78444583 + L1ME LINE L1 443 765 -5651 933 211 132 103 chr9 39418052 39418251 -78444376 + L1ME LINE L1 902 1094 -5332 210 37 0 0 chr9 39418251 39418278 -78444349 + (TG)n Simple_repeat Simple_repeat 2 28 0 933 211 132 103 chr9 39418278 39418306 -78444321 + L1ME LINE L1 1094 1120 -5306 700 266 0 6 chr9 39418306 39418464 -78444163 - FAM SINE Alu -18 157 1 933 211 132 103 chr9 39418464 39419126 -78443501 + L1ME LINE L1 1120 1829 -4597 663 144 68 25 chr9 39419144 39419262 -78443365 + AluSq/x SINE Alu 3 125 -188 275 270 109 67 chr9 39419278 39419775 -78442852 + L1ME LINE L1 1781 2365 -4061 800 180 0 0 chr9 39419817 39419939 -78442688 + FLAM_C SINE Alu 1 122 -21 23 0 0 0 chr9 39419939 39419962 -78442665 + AT_rich Low_complexity Low_complexity 1 23 0 1097 214 108 77 chr9 39420030 39420115 -78442512 + L1ME LINE L1 2599 2680 -3746 2118 83 47 0 chr9 39420115 39420392 -78442235 + AluY SINE Alu 3 292 -19 1097 214 108 77 chr9 39420392 39420815 -78441812 + L1ME LINE L1 2680 3123 -3303 405 156 52 42 chr9 39420815 39420911 -78441716 + L1ME LINE L1 3067 3163 -3263 576 227 0 0 chr9 39421001 39421111 -78441516 - AluJ SINE Alu -4 308 199 232 249 70 49 chr9 39421111 39421296 -78441331 + L1MEc LINE L1 1823 2011 -4385 1362 136 0 0 chr9 39421362 39421553 -78441074 - AluJ SINE Alu -118 194 4 746 132 62 7 chr9 39422400 39422544 -78440083 + L1MB2 LINE L1 6013 6164 -7 2425 75 0 7 chr9 39422562 39422867 -78439760 + AluY SINE Alu 1 303 -8 269 185 74 13 chr9 39422874 39423066 -78439561 + AluJo SINE Alu 48 290 -12 198 0 0 0 chr9 39423113 39423135 -78439492 + (T)n Simple_repeat Simple_repeat 1 22 0 389 290 69 8 chr9 39426012 39426143 -78436484 - L2 LINE L2 0 3313 3175 401 273 45 80 chr9 39426419 39426620 -78436007 + MIR SINE MIR 5 196 -66 1700 174 47 3 chr9 39426620 39426919 -78435708 + AluJb SINE Alu 1 312 0 401 273 45 80 chr9 39426919 39426981 -78435646 + MIR SINE MIR 196 259 -3 1805 164 3 7 chr9 39427851 39428149 -78434478 + AluJo SINE Alu 1 297 -15 203 171 0 0 chr9 39428163 39428204 -78434423 + (TAGA)n Simple_repeat Simple_repeat 1 41 0 3033 277 106 23 chr9 39428363 39428994 -78433633 + L2 LINE L2 1759 2337 -976 2331 93 0 3 chr9 39428994 39429304 -78433323 - AluSg SINE Alu -1 309 1 3033 277 106 23 chr9 39429304 39430098 -78432529 + L2 LINE L2 2337 3312 -1 4584 191 42 29 chr9 39430139 39430229 -78432398 + Looper DNA T2_type 1 88 -1470 1615 190 0 14 chr9 39430229 39430524 -78432103 + AluJb SINE Alu 1 291 -21 4584 191 42 29 chr9 39430524 39431522 -78431105 + Looper DNA T2_type 88 1103 -455 2268 81 6 28 chr9 39431528 39431848 -78430779 - AluSp SINE Alu 0 313 1 1030 181 167 0 chr9 39431873 39432149 -78430478 + Looper DNA T2_type 1230 1551 -7 606 239 227 27 chr9 39432252 39432657 -78429970 + HAL1 LINE L1 2018 2503 -4 478 134 0 24 chr9 39435876 39435958 -78426669 + MADE1 DNA Mariner 1 80 0 1014 204 83 45 chr9 39436580 39436735 -78425892 - AluJo SINE Alu -38 274 103 423 0 0 0 chr9 39436735 39436782 -78425845 + (TG)n Simple_repeat Simple_repeat 2 48 0 1014 204 83 45 chr9 39436782 39436890 -78425737 - AluJo SINE Alu -209 103 1 226 385 125 0 chr9 39437144 39437248 -78425379 + L2 LINE L2 3147 3263 -9 616 148 10 0 chr9 39438135 39438236 -78424391 - MSTA LTR MaLR -326 102 1 1606 225 28 5 chr9 39438240 39438635 -78423992 + L1ME2 LINE L1 5750 6153 -11 371 269 117 21 chr9 39439210 39439355 -78423272 - MIR3 SINE MIR -6 202 44 1249 206 13 8 chr9 39439708 39439946 -78422681 - MER8 DNA MER2_type 0 239 1 1671 166 7 10 chr9 39441178 39441468 -78421159 + AluJb SINE Alu 9 297 -15 537 262 64 42 chr9 39441735 39441935 -78420692 - MIR SINE MIR -30 232 32 2344 90 3 3 chr9 39442997 39443309 -78419318 + AluSq SINE Alu 1 312 -1 2381 88 3 0 chr9 39443510 39443817 -78418810 - AluSp SINE Alu -5 308 1 2225 93 3 13 chr9 39444226 39444526 -78418101 + AluY SINE Alu 1 297 -14 489 316 66 13 chr9 39444624 39444776 -78417851 + MIR3 SINE MIR 28 187 -21 181 352 0 0 chr9 39444782 39444836 -78417791 - L3 LINE CR1 -147 1430 1377 364 320 34 6 chr9 39444979 39445157 -78417470 - L3 LINE CR1 -291 1286 1104 2132 98 0 3 chr9 39445912 39446223 -78416404 - AluSx SINE Alu 0 310 1 2356 87 3 0 chr9 39446308 39446617 -78416010 - AluSg SINE Alu 0 310 1 2230 110 10 3 chr9 39446630 39446938 -78415689 - AluSx SINE Alu 0 312 3 582 265 96 26 chr9 39447746 39447976 -78414651 - L1ME LINE L1 -481 5640 5395 616 203 0 24 chr9 39448488 39448563 -78414064 + FLAM_A SINE Alu 12 84 -227 2220 93 0 7 chr9 39448563 39448852 -78413775 + AluSc SINE Alu 11 297 -12 616 203 0 24 chr9 39448852 39448899 -78413728 + FLAM_A SINE Alu 84 131 -180 404 384 49 26 chr9 39449190 39449456 -78413171 + L2 LINE L2 357 628 -2686 1909 157 10 0 chr9 39449495 39449801 -78412826 + AluSx SINE Alu 1 309 -3 375 200 55 36 chr9 39450342 39450452 -78412175 - MIR SINE MIR -73 189 78 1350 126 0 45 chr9 39450613 39450835 -78411792 + AluJo SINE Alu 92 303 -9 1996 125 26 3 chr9 39451261 39451565 -78411062 - AluSx SINE Alu -1 311 1 480 348 28 7 chr9 39452141 39452282 -78410345 - L2 LINE L2 0 3272 3129 381 103 0 0 chr9 39452434 39452492 -78410135 - L1MD1 LINE L1 -13 6229 6172 659 172 0 39 chr9 39452492 39452620 -78410007 + FLAM_C SINE Alu 3 125 -18 24 32 0 0 chr9 39452750 39452781 -78409846 + AT_rich Low_complexity Low_complexity 1 31 0 1807 163 142 16 chr9 39453400 39453780 -78408847 + MSTA LTR MaLR 1 428 0 647 194 8 22 chr9 39454486 39454620 -78408007 + FLAM_A SINE Alu 2 133 0 24 0 0 0 chr9 39455339 39455363 -78407264 + AT_rich Low_complexity Low_complexity 1 24 0 1980 130 0 46 chr9 39455894 39456217 -78406410 - AluSx SINE Alu -4 308 1 1098 161 0 0 chr9 39456308 39456482 -78406145 - AluSx SINE Alu -138 174 1 21 0 0 0 chr9 39456726 39456747 -78405880 + AT_rich Low_complexity Low_complexity 1 21 0 184 327 0 18 chr9 39456803 39456858 -78405769 + L3 LINE CR1 1384 1437 -140 249 210 185 70 chr9 39456988 39457145 -78405482 + HAL1 LINE L1 1399 1573 -934 696 214 0 0 chr9 39457289 39457420 -78405207 + FLAM_A SINE Alu 2 132 -1 22 0 0 0 chr9 39457432 39457454 -78405173 + AT_rich Low_complexity Low_complexity 1 22 0 255 274 45 38 chr9 39457709 39457866 -78404761 + L1ME4a LINE L1 5158 5315 -831 287 301 50 81 chr9 39457915 39458080 -78404547 + L1ME4a LINE L1 5663 5832 -289 1774 102 8 4 chr9 39458080 39458325 -78404302 + AluSq SINE Alu 44 289 -24 287 301 50 81 chr9 39458325 39458488 -78404139 + L1ME4a LINE L1 5832 5978 -143 2086 94 0 91 chr9 39458488 39458818 -78403809 + AluSx SINE Alu 1 300 -12 287 301 50 81 chr9 39458818 39458910 -78403717 + L1ME4a LINE L1 5978 6071 -50 2693 250 72 17 chr9 39458915 39459284 -78403343 - L1MC/D LINE L1 -743 5403 5056 1776 162 17 0 chr9 39459284 39459580 -78403047 - AluJb SINE Alu -11 301 1 2693 250 72 17 chr9 39459580 39459932 -78402695 - L1MC/D LINE L1 -1090 5056 4686 2173 122 0 0 chr9 39459932 39460235 -78402392 - AluSx SINE Alu -9 303 1 2693 250 72 17 chr9 39460235 39460518 -78402109 - L1MC/D LINE L1 -1460 4686 4420 2442 84 0 0 chr9 39460834 39461145 -78401482 - AluY SINE Alu 0 311 1 707 179 15 22 chr9 39461152 39461286 -78401341 - FLAM_C SINE Alu 0 133 1 1617 206 3 6 chr9 39461340 39461651 -78400976 + AluJo SINE Alu 1 310 -2 764 110 0 0 chr9 39462118 39462227 -78400400 + HY1 scRNA scRNA 3 111 -1 832 243 108 0 chr9 39462824 39463038 -78399589 - MIR SINE MIR -20 242 6 23 68 0 0 chr9 39469516 39469560 -78393067 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr9 39470435 39470456 -78392171 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 39473681 39473702 -78388925 + AT_rich Low_complexity Low_complexity 1 21 0 377 194 0 0 chr9 39474797 39474864 -78387763 - U6 snRNA snRNA -1 106 40 475 316 99 28 chr9 39476274 39476486 -78386141 + MIR SINE MIR 7 233 -29 21 0 0 0 chr9 39476894 39476915 -78385712 + AT_rich Low_complexity Low_complexity 1 21 0 185 108 27 0 chr9 39478319 39478356 -78384271 + (CACCC)n Simple_repeat Simple_repeat 4 41 0 2661 244 90 26 chr9 39482349 39482546 -78380081 - L2 LINE L2 0 3313 3130 228 35 0 0 chr9 39482546 39482575 -78380052 + (TTGG)n Simple_repeat Simple_repeat 3 31 0 2661 244 90 26 chr9 39482575 39483660 -78378967 - L2 LINE L2 -183 3130 1941 495 247 0 41 chr9 39483666 39483812 -78378815 - MIR SINE MIR -71 191 52 200 239 60 45 chr9 39484403 39484470 -78378157 + L2 LINE L2 3241 3308 -5 1195 186 57 0 chr9 39484722 39484970 -78377657 - MER58B DNA MER1_type 0 341 80 730 163 0 16 chr9 39484973 39485096 -78377531 + FLAM_C SINE Alu 2 122 -11 335 338 108 37 chr9 39485269 39485814 -78376813 + L2 LINE L2 2732 3313 0 372 288 82 65 chr9 39485896 39486202 -78376425 + L2 LINE L2 1742 2052 -1262 2067 131 28 0 chr9 39486387 39486677 -78375950 + AluSx SINE Alu 1 298 -14 282 29 0 0 chr9 39486902 39486937 -78375690 + (GTTTG)n Simple_repeat Simple_repeat 5 39 0 2252 119 0 0 chr9 39486950 39487244 -78375383 - AluSp SINE Alu -19 294 1 1645 179 28 3 chr9 39487341 39487631 -78374996 + AluJb SINE Alu 1 297 -15 1711 154 3 64 chr9 39487635 39487946 -78374681 + AluJb SINE Alu 1 292 -20 441 100 62 75 chr9 39488337 39488417 -78374210 + MADE1 DNA Mariner 2 80 0 499 322 148 6 chr9 39488749 39489261 -78373366 + L2 LINE L2 1911 2495 -819 2175 103 0 4 chr9 39489285 39489619 -78373008 - AluSg SINE Alu 0 333 1 2385 94 0 0 chr9 39490732 39491029 -78371598 - AluSx SINE Alu -15 297 1 2360 104 0 9 chr9 39491057 39491373 -78371254 - AluSq SINE Alu 0 313 1 238 358 33 8 chr9 39492138 39492258 -78370369 + MIR3 SINE MIR 48 170 -38 1628 158 0 8 chr9 39492295 39492548 -78370079 - AluJb SINE Alu -61 251 1 2213 96 10 29 chr9 39493453 39493766 -78368861 - AluSq SINE Alu -6 307 1 465 244 174 53 chr9 39493861 39494217 -78368410 + L1 LINE L1 3092 3490 -2656 737 204 0 15 chr9 39494217 39494354 -78368273 + AluJo SINE Alu 2 136 -176 24 0 0 0 chr9 39494601 39494625 -78368002 + AT_rich Low_complexity Low_complexity 1 24 0 1029 233 14 5 chr9 39496560 39496775 -78365852 + MER8 DNA MER2_type 23 239 0 416 243 86 7 chr9 39496822 39496962 -78365665 + L1ME4a LINE L1 5969 6119 -2 198 0 0 0 chr9 39499157 39499179 -78363448 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 844 151 0 0 chr9 39499179 39499298 -78363329 - FLAM_C SINE Alu -24 119 1 479 260 148 48 chr9 39500755 39501086 -78361541 - L1ME LINE L1 -313 5808 5445 826 159 48 0 chr9 39501320 39501446 -78361181 + MER20 DNA MER1_type 87 218 -1 2322 99 3 3 chr9 39502066 39502369 -78360258 - AluSg SINE Alu -7 303 1 476 248 64 55 chr9 39502394 39502596 -78360031 - LTR16C LTR ERVL -65 426 223 1000 183 12 95 chr9 39502743 39502984 -78359643 + AluJo SINE Alu 1 221 -91 735 159 0 0 chr9 39503134 39503247 -78359380 - FLAM_C SINE Alu -29 114 2 1893 122 70 0 chr9 39503740 39504027 -78358600 - AluSx SINE Alu -5 307 1 2182 127 0 0 chr9 39504188 39504495 -78358132 + AluSg SINE Alu 1 307 -3 263 240 164 0 chr9 39504687 39504791 -78357836 + MER96 DNA MER1_type? 53 173 -2 198 237 0 0 chr9 39504849 39504887 -78357740 + MIR SINE MIR 40 77 -131 1747 149 3 88 chr9 39504951 39505293 -78357334 + AluSq SINE Alu 1 313 0 2325 76 3 7 chr9 39505632 39505921 -78356706 + AluSx SINE Alu 1 288 -24 30 0 0 0 chr9 39505921 39505951 -78356676 + AT_rich Low_complexity Low_complexity 1 30 0 279 196 128 122 chr9 39506009 39506157 -78356470 - MLT1H LTR MaLR -127 422 274 * 324 204 92 41 chr9 39506129 39506250 -78356377 - MLT1H LTR MaLR -379 170 41 321 257 53 35 chr9 39506599 39506712 -78355915 + MIR3 SINE MIR 45 159 -49 204 40 0 0 chr9 39506789 39506814 -78355813 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 1993 142 0 4 chr9 39506814 39507095 -78355532 - AluSx SINE Alu -32 280 1 1803 142 17 37 chr9 39507097 39507393 -78355234 - AluJb SINE Alu -22 290 1 581 311 56 38 chr9 39508170 39508566 -78354061 + MLT1K LTR MaLR 176 578 -10 186 238 0 0 chr9 39508653 39508695 -78353932 + L2 LINE L2 3018 3059 -213 22 88 0 0 chr9 39508774 39508831 -78353796 + AT_rich Low_complexity Low_complexity 1 57 0 266 283 204 0 chr9 39508839 39508952 -78353675 + L2 LINE L2 3133 3268 -4 1753 164 3 35 chr9 39509028 39509340 -78353287 + AluJb SINE Alu 11 312 0 298 243 14 14 chr9 39509346 39509416 -78353211 + AluJ/FLAM SINE Alu 2 71 -231 1721 166 20 20 chr9 39509523 39509825 -78352802 - AluJo SINE Alu -6 306 5 1650 159 9 56 chr9 39509838 39510158 -78352469 - AluJb SINE Alu -7 305 1 311 80 20 0 chr9 39512034 39512084 -78350543 - L1MB2 LINE L1 0 6171 6121 2342 106 0 3 chr9 39512088 39512391 -78350236 - AluSq SINE Alu -11 302 1 2213 102 7 7 chr9 39512605 39512899 -78349728 + AluSg SINE Alu 1 294 -16 1873 170 3 0 chr9 39512910 39513198 -78349429 + AluJo SINE Alu 1 289 -23 25 0 0 0 chr9 39513198 39513223 -78349404 + AT_rich Low_complexity Low_complexity 1 25 0 2129 157 32 19 chr9 39513416 39513791 -78348836 - MLT1B LTR MaLR -10 380 1 1870 134 51 0 chr9 39513820 39513939 -78348688 + AluSx SINE Alu 1 112 -200 477 0 0 0 chr9 39513939 39513992 -78348635 + (TAAA)n Simple_repeat Simple_repeat 1 53 0 1870 134 51 0 chr9 39513992 39514147 -78348480 + AluSx SINE Alu 112 289 -23 789 225 84 47 chr9 39514447 39514830 -78347797 - MLT1J2 LTR MaLR -1 445 31 267 115 173 0 chr9 39514948 39515000 -78347627 - HsTC2 DNA Tc2 -1835 63 3 613 293 117 22 chr9 39515222 39515625 -78347002 + L1ME LINE L1 5267 5707 -414 478 185 68 117 chr9 39515644 39515782 -78346845 - HAL1 LINE L1 0 2507 2383 1777 184 3 3 chr9 39515782 39516086 -78346541 - AluJb SINE Alu -8 304 1 478 185 68 117 chr9 39516086 39516169 -78346458 - HAL1 LINE L1 -124 2383 2297 1538 213 3 0 chr9 39516297 39516598 -78346029 - AluSx SINE Alu -10 302 1 571 269 14 0 chr9 39516663 39516808 -78345819 - HAL1 LINE L1 -939 1568 1422 1058 197 0 0 chr9 39516864 39517047 -78345580 - AluJo SINE Alu -10 302 120 257 0 30 0 chr9 39517106 39517139 -78345488 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 1512 202 7 7 chr9 39517257 39517539 -78345088 + AluJo SINE Alu 19 300 -12 1601 189 0 53 chr9 39517716 39517864 -78344763 + AluJo SINE Alu 1 124 -188 2126 94 0 36 chr9 39517864 39518171 -78344456 + AluY SINE Alu 1 296 -15 1601 189 0 53 chr9 39518171 39518344 -78344283 + AluJo SINE Alu 124 305 -7 473 268 45 75 chr9 39518349 39518614 -78344013 + L2 LINE L2 3057 3313 0 867 237 42 78 chr9 39519144 39519398 -78343229 - LTR8 LTR ERV1 -2 689 450 1894 169 0 0 chr9 39519398 39519693 -78342934 - AluSx SINE Alu -7 305 11 867 237 42 78 chr9 39519693 39519797 -78342830 - LTR8 LTR ERV1 -241 450 344 1376 206 4 4 chr9 39519942 39520194 -78342433 - AluJb SINE Alu -60 252 1 718 194 15 110 chr9 39520212 39520475 -78342152 - HAL1 LINE L1 -146 2361 2124 2030 153 3 0 chr9 39520512 39520813 -78341814 - AluSx SINE Alu -10 302 1 233 200 15 31 chr9 39520814 39520879 -78341748 - HAL1 LINE L1 -464 2043 1980 * 553 264 21 0 chr9 39520878 39521022 -78341605 - HAL1 LINE L1 -939 1568 1422 1130 180 0 0 chr9 39521078 39521261 -78341366 - AluJo SINE Alu -10 302 120 257 0 30 0 chr9 39521320 39521353 -78341274 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 1512 202 7 7 chr9 39521471 39521753 -78340874 + AluJo SINE Alu 19 300 -12 1726 174 0 53 chr9 39521930 39522078 -78340549 + AluJo SINE Alu 1 124 -188 2296 75 0 33 chr9 39522078 39522384 -78340243 + AluY SINE Alu 1 296 -15 1726 174 0 53 chr9 39522384 39522557 -78340070 + AluJo SINE Alu 124 305 -7 473 268 45 75 chr9 39522562 39522827 -78339800 + L2 LINE L2 3057 3313 0 2736 165 50 88 chr9 39523356 39523607 -78339020 - LTR8 LTR ERV1 -1 690 431 2328 109 3 0 chr9 39523607 39523911 -78338716 - AluSx SINE Alu -4 308 4 2736 165 50 88 chr9 39523911 39524345 -78338282 - LTR8 LTR ERV1 -260 431 31 2348 77 27 7 chr9 39524345 39524644 -78337983 - AluSq SINE Alu -8 305 1 2736 165 50 88 chr9 39524644 39524674 -78337953 - LTR8 LTR ERV1 -660 31 1 253 253 84 0 chr9 39524980 39525063 -78337564 - L1ME LINE L1 -346 5775 5686 1632 195 115 72 chr9 39525069 39525684 -78336943 - LTR48B LTR ERV1 -2 642 1 1829 166 159 86 chr9 39525779 39525828 -78336799 - LTR24C LTR ERV1 -2 633 589 2133 119 0 32 chr9 39525828 39526140 -78336487 + AluSx SINE Alu 1 302 -10 1829 166 159 86 chr9 39526140 39526657 -78335970 - LTR24C LTR ERV1 -46 589 26 1337 69 148 10 chr9 39526827 39527029 -78335598 - MER30 DNA MER1_type 0 230 1 2056 134 7 0 chr9 39527846 39528137 -78334490 - AluJb SINE Alu -19 293 1 1984 55 59 52 chr9 39528348 39528619 -78334008 + AluSx SINE Alu 1 273 -39 283 276 95 0 chr9 39528644 39528749 -78333878 - MIR SINE MIR -36 226 112 388 208 75 45 chr9 39529231 39529385 -78333242 + MIR SINE MIR 30 192 -51 1351 169 4 0 chr9 39529798 39530023 -78332604 - AluJo SINE Alu 0 312 87 751 237 105 62 chr9 39530054 39530425 -78332202 - L2 LINE L2 0 3313 2927 619 284 39 39 chr9 39531947 39532204 -78330423 + LTR16A1 LTR ERVL 201 457 0 204 163 0 61 chr9 39532482 39532531 -78330096 + MIR SINE MIR 102 147 -61 221 323 39 31 chr9 39533003 39533130 -78329497 + MIR SINE MIR 18 145 -63 1455 209 47 23 chr9 39533481 39533825 -78328802 - MSTD LTR MaLR 0 396 45 1077 148 0 0 chr9 39533825 39534000 -78328627 - AluSp SINE Alu 0 311 137 245 152 87 0 chr9 39534004 39534050 -78328577 - MSTD LTR MaLR -378 50 1 251 196 18 143 chr9 39534087 39534199 -78328428 + MIR SINE MIR 85 182 -80 201 316 26 0 chr9 39534591 39534667 -78327960 + MIR SINE MIR 67 144 -118 542 276 36 0 chr9 39534726 39534920 -78327707 + MIR SINE MIR 18 219 -43 340 292 33 16 chr9 39535040 39535184 -78327443 + L2 LINE L2 2909 3050 -222 274 241 131 105 chr9 39535408 39535599 -78327028 - L2 LINE L2 0 3313 3118 1809 123 4 0 chr9 39535609 39535914 -78326713 + AluSx SINE Alu 58 363 0 427 221 151 70 chr9 39536004 39536176 -78326451 + MER5A DNA MER1_type 4 189 0 1006 277 78 0 chr9 39536209 39536505 -78326122 + MER58B DNA MER1_type 23 341 0 199 280 0 67 chr9 39536506 39536581 -78326046 - MIR3 SINE MIR -49 159 90 698 225 46 23 chr9 39536670 39536843 -78325784 + MLT1G3 LTR MaLR 154 330 -200 403 301 49 0 chr9 39537451 39537574 -78325053 + MIR SINE MIR 52 180 -82 574 244 184 5 chr9 39537649 39537850 -78324777 + MIR SINE MIR 13 249 -13 202 209 0 104 chr9 39538089 39538156 -78324471 - MIR SINE MIR -72 136 77 513 265 42 35 chr9 39538615 39538875 -78323752 - MIR SINE MIR 0 262 1 1512 164 56 31 chr9 39539262 39539548 -78323079 - AluJo SINE Alu -19 293 1 35 0 0 0 chr9 39539554 39539589 -78323038 + AT_rich Low_complexity Low_complexity 1 35 0 2346 102 3 6 chr9 39539600 39539913 -78322714 - AluSx SINE Alu 0 312 1 1081 213 28 44 chr9 39540098 39540347 -78322280 - AluJo SINE Alu -67 245 1 1921 146 36 7 chr9 39540417 39540718 -78321909 + AluJb SINE Alu 1 310 -2 1434 282 57 5 chr9 39540731 39541219 -78321408 - L1MC4a LINE L1 -234 5928 5383 1938 151 0 7 chr9 39541220 39541540 -78321087 - AluSx SINE Alu 0 322 5 349 227 0 0 chr9 39541547 39541613 -78321014 + MER2 DNA MER2_type 280 345 0 1439 220 102 9 chr9 39542662 39543085 -78319542 - MLT1C LTR MaLR 0 467 6 285 232 20 71 chr9 39544091 39544190 -78318437 + MIR3 SINE MIR 109 202 -6 944 86 0 0 chr9 39544723 39544851 -78317776 + FLAM_C SINE Alu 1 128 -5 1864 141 58 10 chr9 39544878 39545169 -78317458 + AluJb SINE Alu 1 305 -7 221 263 0 18 chr9 39545396 39545453 -78317174 - L2 LINE L2 0 3272 3217 354 286 31 0 chr9 39545535 39545633 -78316994 - L2 LINE L2 -13 3300 3200 1689 152 40 18 chr9 39546190 39546490 -78316137 + AluJb SINE Alu 1 306 0 200 399 63 14 chr9 39546736 39546879 -78315748 - L2 LINE L2 -214 3058 2909 203 203 203 16 chr9 39546996 39547060 -78315567 + MIR SINE MIR 117 192 -70 1638 177 11 4 chr9 39547155 39547426 -78315201 + AluJo SINE Alu 23 295 -17 2366 95 0 3 chr9 39547512 39547808 -78314819 + AluY SINE Alu 1 295 -16 1642 157 149 0 chr9 39548012 39548355 -78314272 - MLT2C1 LTR ERVL -3 394 1 270 375 59 0 chr9 39548627 39548779 -78313848 + L3 LINE CR1 1345 1505 -72 220 281 96 30 chr9 39549548 39549683 -78312944 - MIR3 SINE MIR -60 148 5 361 270 115 7 chr9 39550173 39550321 -78312306 - MIR3 SINE MIR -28 180 17 250 331 100 36 chr9 39550897 39551256 -78311371 + L2 LINE L2 2852 3233 -39 366 311 8 0 chr9 39551604 39551726 -78310901 + (CA)n Simple_repeat Simple_repeat 1 123 0 764 148 0 63 chr9 39552129 39552271 -78310356 + FLAM_C SINE Alu 1 133 0 225 214 29 43 chr9 39552283 39552353 -78310274 - L2 LINE L2 -4 3309 3241 1799 157 24 3 chr9 39552421 39552708 -78309919 + AluJb SINE Alu 1 293 -19 217 289 31 47 chr9 39552736 39552864 -78309763 - L2 LINE L2 -224 3048 2923 455 174 54 0 chr9 39552869 39552961 -78309666 - L1ME3 LINE L1 -220 5942 5846 473 230 12 79 chr9 39553477 39553498 -78309129 + MER5B DNA MER1_type 25 46 -132 2456 74 7 0 chr9 39553498 39553795 -78308832 - AluY SINE Alu -12 299 1 473 230 12 79 chr9 39553795 39553938 -78308689 + MER5B DNA MER1_type 46 178 0 1430 203 101 33 chr9 39554104 39554469 -78308158 + MLT1B LTR MaLR 1 390 0 233 339 82 0 chr9 39554531 39554702 -78307925 + L1ME4a LINE L1 5632 5816 -305 1669 122 50 72 chr9 39554749 39555068 -78307559 - AluSx SINE Alu 0 312 1 2449 102 0 0 chr9 39555091 39555395 -78307232 + AluSx SINE Alu 1 304 -8 845 213 191 11 chr9 39555450 39555723 -78306904 + L1ME3A LINE L1 5743 6064 -106 336 24 0 0 chr9 39556565 39556606 -78306021 + (TG)n Simple_repeat Simple_repeat 2 42 0 2304 113 6 3 chr9 39556796 39557107 -78305520 + AluSq SINE Alu 1 312 -1 633 126 0 0 chr9 39557125 39557220 -78305407 - FLAM_A SINE Alu -26 116 22 207 217 0 0 chr9 39557327 39557373 -78305254 - MIR SINE MIR -62 146 101 315 205 32 22 chr9 39558430 39558541 -78304086 + (TA)n Simple_repeat Simple_repeat 2 117 -71 2336 105 0 3 chr9 39558541 39558847 -78303780 - AluSx SINE Alu -7 305 1 315 205 32 22 chr9 39558847 39558920 -78303707 + (TA)n Simple_repeat Simple_repeat 117 188 0 238 253 0 42 chr9 39558920 39559015 -78303612 + L1ME4a LINE L1 5926 6016 -105 186 284 126 11 chr9 39559249 39559344 -78303283 + L2 LINE L2 3203 3308 -5 597 184 0 20 chr9 39559344 39559496 -78303131 + GA-rich Low_complexity Low_complexity 3 151 0 2073 115 3 11 chr9 39559686 39559998 -78302629 + AluSx SINE Alu 1 310 0 397 359 94 17 chr9 39559999 39560297 -78302330 - L1ME4a LINE L1 -86 6035 5715 262 273 0 0 chr9 39560584 39560650 -78301977 - MER5C DNA MER1_type -257 67 2 239 359 0 22 chr9 39561104 39561196 -78301431 - L2 LINE L2 -566 2748 2659 606 231 42 97 chr9 39561330 39561673 -78300954 + MLT1H LTR MaLR 120 549 0 250 211 174 18 chr9 39562655 39562764 -78299863 + MIR3 SINE MIR 78 203 -5 345 248 91 16 chr9 39563252 39563373 -78299254 - MIR SINE MIR -52 210 81 864 55 0 0 chr9 39563422 39563532 -78299095 + (TTCC)n Simple_repeat Simple_repeat 3 112 0 654 148 33 8 chr9 39563532 39563649 -78298978 - FLAM_C SINE Alu -12 121 2 888 239 47 63 chr9 39564201 39564366 -78298261 - LTR16A LTR ERVL -54 396 230 2234 117 0 13 chr9 39564366 39564666 -78297961 + AluSx SINE Alu 1 296 -16 888 239 47 63 chr9 39564666 39564881 -78297746 - LTR16A LTR ERVL -220 230 22 180 298 67 19 chr9 39564927 39565031 -78297596 + MIR SINE MIR 143 251 -11 301 274 59 0 chr9 39565105 39565207 -78297420 - L3 LINE CR1 -78 1499 1392 2718 157 11 25 chr9 39565207 39565736 -78296891 - L1MB3 LINE L1 0 6183 5662 2331 94 0 0 chr9 39565746 39566032 -78296595 + AluSx SINE Alu 12 297 -15 654 171 0 24 chr9 39566142 39566265 -78296362 + AluSg/x SINE Alu 177 296 -14 1722 124 23 8 chr9 39566266 39566532 -78296095 - LTR28 LTR ERV1 -750 270 1 436 170 90 0 chr9 39566578 39566678 -78295949 + HsTC2 DNA Tc2 1783 1891 -7 517 177 94 0 chr9 39566706 39566802 -78295825 + FLAM_A SINE Alu 10 114 -28 2031 116 7 26 chr9 39567080 39567383 -78295244 - AluSx SINE Alu -15 297 1 1952 157 0 25 chr9 39567924 39568243 -78294384 - AluJo SINE Alu 0 312 2 564 174 138 0 chr9 39568265 39568374 -78294253 - FLAM_C SINE Alu -18 125 2 2206 88 7 17 chr9 39568378 39568672 -78293955 - AluSp SINE Alu -22 291 1 1800 130 31 15 chr9 39568713 39568818 -78293809 + AluSg SINE Alu 30 132 -178 2511 67 3 0 chr9 39568818 39569115 -78293512 + AluY SINE Alu 1 298 -13 1800 130 31 15 chr9 39569115 39569270 -78293357 + AluSg SINE Alu 132 294 -16 2206 96 3 3 chr9 39569353 39569635 -78292992 - AluSp SINE Alu -16 297 16 3992 162 35 35 chr9 39569661 39570550 -78292077 - Charlie1 DNA MER1_type -259 2502 1614 299 247 82 88 chr9 39570625 39570795 -78291832 + LTR67 LTR ERVL 386 554 -3 1863 160 17 0 chr9 39571303 39571597 -78291030 + AluJb SINE Alu 6 304 -8 189 240 300 10 chr9 39572025 39572125 -78290502 - L2 LINE L2 -5 3308 3180 2154 122 0 3 chr9 39572587 39572881 -78289746 + AluJb SINE Alu 11 303 -9 424 180 30 40 chr9 39572887 39572987 -78289640 + FLAM_C SINE Alu 31 129 -14 4128 141 93 12 chr9 39573098 39573862 -78288765 - LTR1B LTR ERV1 0 826 1 633 313 96 62 chr9 39574819 39575225 -78287402 - MLT1K LTR MaLR -94 494 75 1641 144 39 0 chr9 39575362 39575618 -78287009 + AluJo SINE Alu 15 280 -32 670 276 64 86 chr9 39575842 39576309 -78286318 + LTR16A1 LTR ERVL 1 457 0 243 88 0 0 chr9 39576451 39576485 -78286142 + (A)n Simple_repeat Simple_repeat 1 34 0 3007 154 13 83 chr9 39576590 39576709 -78285918 + L1MB3 LINE L1 5554 5680 -503 1838 156 13 17 chr9 39576709 39577011 -78285616 + AluJo SINE Alu 12 312 0 3007 154 13 83 chr9 39577011 39577028 -78285599 + L1MB3 LINE L1 5680 5697 -486 2331 94 0 0 chr9 39577028 39577314 -78285313 - AluSx SINE Alu -15 297 12 3007 154 13 83 chr9 39577314 39577853 -78284774 + L1MB3 LINE L1 5697 6183 0 290 270 60 0 chr9 39577854 39577954 -78284673 + L3 LINE CR1 1394 1499 -78 180 298 67 19 chr9 39578028 39578132 -78284495 - MIR SINE MIR -11 251 143 888 239 47 63 chr9 39578178 39578393 -78284234 + LTR16A LTR ERVL 22 230 -220 2234 117 0 13 chr9 39578393 39578693 -78283934 - AluSx SINE Alu -16 296 1 888 239 47 63 chr9 39578693 39578858 -78283769 + LTR16A LTR ERVL 230 396 -54 654 148 33 8 chr9 39579410 39579527 -78283100 + FLAM_C SINE Alu 2 122 -7 864 55 0 0 chr9 39579527 39579637 -78282990 + (GGAA)n Simple_repeat Simple_repeat 3 112 0 345 248 91 16 chr9 39579686 39579807 -78282820 + MIR SINE MIR 81 210 -52 250 211 174 18 chr9 39580295 39580404 -78282223 - MIR3 SINE MIR -5 203 78 606 231 42 97 chr9 39581386 39581729 -78280898 - MLT1H LTR MaLR 0 549 120 239 359 0 22 chr9 39581863 39581955 -78280672 + L2 LINE L2 2659 2748 -566 262 273 0 0 chr9 39582409 39582475 -78280152 + MER5C DNA MER1_type 2 67 -257 414 357 88 17 chr9 39582762 39583056 -78279571 + L1ME4a LINE L1 5715 6029 -92 195 42 0 0 chr9 39583060 39583084 -78279543 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 2152 108 0 10 chr9 39583086 39583374 -78279253 - AluSx SINE Alu -27 285 1 597 184 0 20 chr9 39583564 39583716 -78278911 + CT-rich Low_complexity Low_complexity 3 151 0 207 242 147 32 chr9 39583716 39583811 -78278816 - L2 LINE L2 -5 3308 3203 231 253 0 42 chr9 39584045 39584140 -78278487 - L1ME4a LINE L1 -105 6016 5926 315 205 32 22 chr9 39584140 39584213 -78278414 + (TA)n Simple_repeat Simple_repeat 2 73 -115 2331 105 0 3 chr9 39584213 39584519 -78278108 + AluSx SINE Alu 1 305 -7 315 205 32 22 chr9 39584519 39584630 -78277997 + (TA)n Simple_repeat Simple_repeat 73 188 0 199 214 0 54 chr9 39585687 39585743 -78276884 + MIR SINE MIR 101 153 -55 675 126 0 0 chr9 39585840 39585935 -78276692 + FLAM_A SINE Alu 22 116 -26 2296 113 6 3 chr9 39585953 39586264 -78276363 - AluSq SINE Alu -1 312 1 336 24 0 0 chr9 39586454 39586495 -78276132 + (CA)n Simple_repeat Simple_repeat 2 42 0 191 242 274 57 chr9 39586824 39586948 -78275679 + L2 LINE L2 2921 3071 -201 821 213 191 11 chr9 39587337 39587610 -78275017 - L1ME3A LINE L1 -106 6064 5743 2299 108 27 0 chr9 39587665 39587961 -78274666 - AluSx SINE Alu -8 304 1 344 278 147 61 chr9 39587961 39588159 -78274468 - L1ME3A LINE L1 -762 5384 5170 411 145 241 0 chr9 39588183 39588266 -78274361 - 5S rRNA rRNA -10 111 9 604 267 77 17 chr9 39588330 39588644 -78273983 - MLT1G3 LTR MaLR -5 590 175 1805 158 6 29 chr9 39589456 39589772 -78272855 - AluJo SINE Alu -3 309 1 1823 143 14 14 chr9 39589786 39590073 -78272554 - AluJo SINE Alu -25 287 1 516 280 70 25 chr9 39590085 39590285 -78272342 - MIR SINE MIR -17 245 37 240 179 75 0 chr9 39591534 39591601 -78271026 + MIR SINE MIR 48 119 -89 284 258 141 8 chr9 39591951 39592079 -78270548 + MIR SINE MIR 6 150 -112 352 230 71 53 chr9 39592506 39592619 -78270008 - MIR SINE MIR -56 206 92 2185 129 0 10 chr9 39592967 39593270 -78269357 + AluSg SINE Alu 1 300 -10 543 237 95 9 chr9 39593562 39593835 -78268792 + MER46C DNA MER2_type 1 338 0 2133 135 0 3 chr9 39593854 39594157 -78268470 + AluJb SINE Alu 1 302 -10 388 251 140 58 chr9 39594421 39594592 -78268035 + MIR3 SINE MIR 17 201 -7 376 272 252 7 chr9 39595533 39595680 -78266947 + L3 LINE CR1 844 1026 -551 220 231 44 44 chr9 39596495 39596586 -78266041 - MER91A DNA MER1_type -48 148 58 500 206 27 98 chr9 39597956 39598140 -78264487 - MIR SINE MIR -36 226 56 2223 133 0 0 chr9 39598697 39598998 -78263629 + AluSg SINE Alu 1 301 -9 601 229 291 3 chr9 39599123 39599473 -78263154 + LTR50 LTR ERVL 2 452 -343 2351 90 0 0 chr9 39599528 39599818 -78262809 - AluSx SINE Alu -7 305 16 849 172 23 29 chr9 39599829 39600003 -78262624 - MER5A DNA MER1_type -6 183 11 1825 168 11 0 chr9 39601279 39601553 -78261074 + AluJb SINE Alu 11 287 -25 753 164 55 0 chr9 39601909 39602037 -78260590 + AluJo SINE Alu 2 136 -176 667 230 0 0 chr9 39602110 39602236 -78260391 - FLAM_A SINE Alu -7 126 1 2034 150 0 3 chr9 39602415 39602709 -78259918 - AluJb SINE Alu -19 293 1 720 244 26 6 chr9 39603333 39603489 -78259138 + FAM SINE Alu 1 159 -16 326 161 11 151 chr9 39603489 39603582 -78259045 + FAM SINE Alu 86 167 -8 866 221 84 67 chr9 39609285 39609367 -78253260 + HAL1 LINE L1 1 80 -2427 2002 100 82 7 chr9 39609367 39609647 -78252980 + AluSx SINE Alu 1 301 -11 866 221 84 67 chr9 39609647 39609921 -78252706 + HAL1 LINE L1 80 363 -2144 1112 174 5 0 chr9 39609936 39609950 -78252677 + AluJb SINE Alu 118 130 -182 1753 152 25 11 chr9 39609950 39610233 -78252394 + AluJb SINE Alu 5 291 -21 1112 174 5 0 chr9 39610233 39610402 -78252225 + AluJb SINE Alu 130 302 -10 357 282 84 69 chr9 39610403 39610498 -78252129 + HAL1 LINE L1 1188 1280 -1227 2325 90 0 7 chr9 39610498 39610799 -78251828 - AluSx SINE Alu -13 299 1 357 282 84 69 chr9 39610799 39610905 -78251722 + HAL1 LINE L1 1280 1392 -1115 1518 222 174 67 chr9 39610910 39611670 -78250957 + HAL1 LINE L1 1480 2347 -160 1788 125 27 30 chr9 39611670 39611967 -78250660 + AluJb SINE Alu 11 306 -6 1518 222 174 67 chr9 39611967 39612077 -78250550 + HAL1 LINE L1 2347 2444 -63 1601 204 0 19 chr9 39612118 39612427 -78250200 + AluSx SINE Alu 1 303 -9 28 0 0 0 chr9 39612436 39612464 -78250163 + AT_rich Low_complexity Low_complexity 1 28 0 1900 124 103 26 chr9 39613342 39613690 -78248937 - THE1C LTR MaLR 0 375 1 842 141 96 0 chr9 39613759 39613894 -78248733 - FRAM SINE Alu -8 168 21 252 276 114 16 chr9 39613895 39614018 -78248609 - MIR SINE MIR -1 261 127 763 209 0 8 chr9 39614173 39614307 -78248320 + FLAM_C SINE Alu 1 133 0 1129 176 95 91 chr9 39614999 39615064 -78247563 - Charlie1b DNA MER1_type -2350 411 348 2373 89 3 0 chr9 39615064 39615368 -78247259 + AluSc SINE Alu 1 305 -4 1129 176 95 91 chr9 39615368 39615402 -78247225 - Charlie1b DNA MER1_type -2413 348 316 808 154 15 0 chr9 39615402 39615532 -78247095 + FLAM_C SINE Alu 1 132 -1 1129 176 95 91 chr9 39615532 39615715 -78246912 - Charlie1b DNA MER1_type -2445 316 135 2060 142 16 7 chr9 39615715 39616018 -78246609 + AluSx SINE Alu 1 306 -6 3254 138 77 31 chr9 39616028 39616613 -78246014 + LTR9 LTR ERV1 1 612 0 1129 176 95 91 chr9 39616613 39616726 -78245901 - Charlie1b DNA MER1_type -2634 127 1 348 164 68 82 chr9 39616852 39616897 -78245730 + HAL1 LINE L1 2272 2316 -191 2265 79 50 0 chr9 39616897 39617177 -78245450 + AluSx SINE Alu 2 295 -17 348 164 68 82 chr9 39617177 39617277 -78245350 + HAL1 LINE L1 2316 2415 -92 1312 154 0 26 chr9 39617281 39617508 -78245119 + AluJb SINE Alu 87 307 -5 2073 130 38 0 chr9 39617584 39617877 -78244750 + AluSx SINE Alu 1 304 -8 1318 198 86 36 chr9 39618021 39618549 -78244078 - LTR8A LTR ERV1 -150 577 1 656 279 79 17 chr9 39618817 39619197 -78243430 - LTR16A1 LTR ERVL 0 457 78 1632 144 39 0 chr9 39619507 39619763 -78242864 - AluJo SINE Alu -32 280 15 541 302 74 68 chr9 39619899 39620237 -78242390 + MLT1K LTR MaLR 75 414 -174 4437 141 93 12 chr9 39621262 39622026 -78240601 + LTR1B LTR ERV1 1 826 0 488 170 30 40 chr9 39622137 39622237 -78240390 - FLAM_C SINE Alu -14 129 31 2148 122 0 3 chr9 39622243 39622537 -78240090 - AluJb SINE Alu -9 303 11 214 240 300 10 chr9 39622999 39623099 -78239528 + L2 LINE L2 3180 3308 -5 1856 160 17 0 chr9 39623527 39623821 -78238806 - AluJb SINE Alu -8 304 6 293 260 96 10 chr9 39624329 39624433 -78238194 - LTR67 LTR ERVL -3 554 442 3991 162 35 35 chr9 39624574 39625463 -78237164 + Charlie1 DNA MER1_type 1614 2502 -259 2200 96 3 3 chr9 39625489 39625771 -78236856 + AluSp SINE Alu 16 297 -16 1153 131 51 11 chr9 39625854 39626009 -78236618 - AluSg/x SINE Alu -16 296 132 2595 51 3 0 chr9 39626009 39626305 -78236322 - AluY SINE Alu -14 297 1 1153 131 51 11 chr9 39626305 39626325 -78236302 - AluSg/x SINE Alu -180 132 114 2102 133 0 17 chr9 39626572 39626734 -78235893 - AluSx SINE Alu -17 295 139 1973 154 0 7 chr9 39626734 39627033 -78235594 - AluSx SINE Alu -15 297 1 2102 133 0 17 chr9 39627033 39627170 -78235457 - AluSx SINE Alu -173 139 1 187 182 18 73 chr9 39627883 39627938 -78234689 - MIR SINE MIR -188 74 23 392 159 14 0 chr9 39628122 39628191 -78234436 - MLT1K LTR MaLR -6 582 513 263 291 0 43 chr9 39628191 39628239 -78234388 - LTR67 LTR ERVL -6 551 440 2298 100 3 3 chr9 39628404 39628703 -78233924 - AluSp SINE Alu -14 299 1 23 33 0 0 chr9 39629104 39629134 -78233493 + AT_rich Low_complexity Low_complexity 1 30 0 286 297 156 23 chr9 39630278 39630406 -78232221 + L2 LINE L2 3119 3263 -9 180 0 0 0 chr9 39631697 39631717 -78230910 + (CA)n Simple_repeat Simple_repeat 2 21 0 2209 100 0 13 chr9 39632350 39632649 -78229978 + AluSx SINE Alu 1 295 -17 276 340 68 17 chr9 39632967 39633202 -78229425 + L1ME LINE L1 5460 5706 -415 2457 78 0 7 chr9 39633357 39633664 -78228963 + AluSg SINE Alu 1 305 -5 349 204 156 90 chr9 39633923 39634090 -78228537 + MER51A LTR ERV1 1 178 -456 1950 67 4 0 chr9 39634090 39634328 -78228299 + AluSq SINE Alu 1 239 -74 755 99 25 0 chr9 39634528 39634649 -78227978 + (CAAGG)n Simple_repeat Simple_repeat 2 125 0 262 200 18 0 chr9 39634649 39634704 -78227923 + MER51A LTR ERV1 177 232 -402 740 153 37 112 chr9 39634705 39634920 -78227707 + MER51A LTR ERV1 342 540 -94 2219 60 0 4 chr9 39634920 39635221 -78227406 + AluY SINE Alu 1 300 0 1114 133 0 0 chr9 39635221 39635394 -78227233 + AluSp SINE Alu 133 305 -8 360 167 44 56 chr9 39635394 39635484 -78227143 + MER51A LTR ERV1 546 634 0 319 309 64 77 chr9 39635521 39635577 -78227050 + L1MC/D LINE L1 5010 5065 -1081 1931 141 7 3 chr9 39635577 39635875 -78226752 - AluSx SINE Alu -13 299 1 319 309 64 77 chr9 39635875 39636051 -78226576 + L1MC/D LINE L1 5065 5239 -907 1692 165 14 3 chr9 39636070 39636355 -78226272 - AluJo SINE Alu -24 288 1 744 292 27 21 chr9 39636380 39636483 -78226144 + L1MC/D LINE L1 5260 5361 -2447 2113 104 0 0 chr9 39636483 39636781 -78225846 + AluSg SINE Alu 13 310 0 744 292 27 21 chr9 39636781 39637009 -78225618 + L1MC/D LINE L1 5361 5593 -2215 435 278 74 9 chr9 39637501 39637717 -78224910 + L1MC/D LINE L1 5592 5821 -1987 1690 121 6 107 chr9 39637726 39638073 -78224554 + AluJb SINE Alu 1 312 0 801 296 26 47 chr9 39638073 39638539 -78224088 + L1MEc LINE L1 23 478 -5918 1761 113 4 8 chr9 39638647 39638904 -78223723 + AluSg SINE Alu 1 256 -54 542 206 53 114 chr9 39639057 39639265 -78223362 - MER58C DNA MER1_type -2205 215 21 1813 187 18 59 chr9 39639265 39639437 -78223190 + MLT1A2 LTR MaLR 1 179 -195 1959 120 0 0 chr9 39639437 39639755 -78222872 + AluSg SINE Alu 6 323 0 1813 187 18 59 chr9 39639755 39639971 -78222656 + MLT1A2 LTR MaLR 179 374 0 542 206 53 114 chr9 39639971 39639990 -78222637 - MER58C DNA MER1_type -2399 21 2 1496 233 35 4 chr9 39639991 39640511 -78222116 + L1MEc LINE L1 2057 2551 -3664 1094 199 76 56 chr9 39640511 39640559 -78222068 - MSTD LTR MaLR -2 394 348 2480 121 86 8 chr9 39640559 39640956 -78221671 - MSTA LTR MaLR 0 428 1 1094 199 76 56 chr9 39640956 39641209 -78221418 - MSTD LTR MaLR -48 348 87 225 154 0 0 chr9 39641209 39641248 -78221379 + (TG)n Simple_repeat Simple_repeat 1 39 0 716 248 0 0 chr9 39641250 39641399 -78221228 - AluJb SINE Alu -31 281 133 207 0 0 0 chr9 39641399 39641422 -78221205 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1028 108 18 24 chr9 39641425 39641592 -78221035 - AluSq SINE Alu -28 285 120 2054 118 3 7 chr9 39641702 39642007 -78220620 + AluSx SINE Alu 1 304 -8 2385 66 0 7 chr9 39644427 39644729 -78217898 - AluY SINE Alu -11 300 1 26 30 0 0 chr9 39645093 39645126 -78217501 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr9 39645541 39645562 -78217065 + AT_rich Low_complexity Low_complexity 1 21 0 2586 72 12 0 chr9 39645744 39646079 -78216548 + L1PA13 LINE L1 5816 6154 -9 189 0 0 0 chr9 39646141 39646162 -78216465 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1396 169 24 0 chr9 39646166 39646415 -78216212 - AluJo SINE Alu -28 284 30 235 235 184 20 chr9 39646427 39646623 -78216004 + L1ME4a LINE L1 5882 6109 -12 657 300 132 66 chr9 39646642 39647265 -78215362 + L3 LINE CR1 839 1502 -75 281 262 19 19 chr9 39647277 39647380 -78215247 + GA-rich Low_complexity Low_complexity 5 107 0 2365 78 3 0 chr9 39647390 39647698 -78214929 + AluSg SINE Alu 1 309 -1 2036 109 0 0 chr9 39647999 39648322 -78214305 + AluSq SINE Alu 1 323 0 468 189 30 8 chr9 39648759 39648871 -78213756 - MER5A DNA MER1_type -71 118 4 227 222 56 0 chr9 39649019 39649073 -78213554 - L2 LINE L2 -1 3271 3215 204 318 80 0 chr9 39649078 39649166 -78213461 - L2 LINE L2 -9 3263 3169 297 179 167 0 chr9 39649169 39649247 -78213380 - L2 LINE L2 0 3313 3223 208 278 0 19 chr9 39649341 39649395 -78213232 + T-rich Low_complexity Low_complexity 4 56 0 631 194 113 88 chr9 39649444 39649521 -78213106 + L1MC4 LINE L1 7612 7686 -356 1508 154 37 60 chr9 39649521 39649820 -78212807 + AluJb SINE Alu 1 292 -20 631 194 113 88 chr9 39649820 39649905 -78212722 + L1MC4 LINE L1 7686 7767 -275 1626 151 58 0 chr9 39649905 39650197 -78212430 - AluJo SINE Alu -2 310 2 631 194 113 88 chr9 39650197 39650316 -78212311 + L1MC4 LINE L1 7767 7901 -141 421 277 141 31 chr9 39650536 39651003 -78211624 + MER115 DNA AcHobo 19 587 -106 195 259 143 45 chr9 39652267 39652379 -78210248 - L2 LINE L2 0 3313 3191 578 100 290 0 chr9 39652381 39652481 -78210146 - MER20 DNA MER1_type 0 219 91 204 336 88 22 chr9 39652629 39652766 -78209861 - L2 LINE L2 -229 3043 2898 292 285 54 9 chr9 39653575 39653705 -78208922 + MIR SINE MIR 12 146 -62 209 255 0 0 chr9 39654079 39654126 -78208501 + (CATCC)n Simple_repeat Simple_repeat 5 51 0 2147 98 10 0 chr9 39654244 39654541 -78208086 + AluSx SINE Alu 1 300 -12 2002 116 0 0 chr9 39654877 39655152 -78207475 - AluSx SINE Alu -37 275 1 453 271 28 0 chr9 39655160 39655267 -78207360 - L2 LINE L2 -5 3308 3199 26 50 0 0 chr9 39655376 39655416 -78207211 + AT_rich Low_complexity Low_complexity 1 40 0 1985 138 0 0 chr9 39656745 39657042 -78205585 - AluSx SINE Alu -15 297 1 526 253 248 5 chr9 39657281 39657483 -78205144 - MIR SINE MIR -10 252 2 517 248 23 8 chr9 39657596 39657725 -78204902 + MIR3 SINE MIR 37 167 -41 278 250 60 0 chr9 39657757 39657841 -78204786 - MER103 DNA DNA -29 137 49 253 298 79 9 chr9 39658015 39658129 -78204498 + MIR3 SINE MIR 83 204 -4 383 244 38 38 chr9 39658400 39658531 -78204096 + MER117 DNA MER1_type 38 168 -29 244 311 0 0 chr9 39658543 39658604 -78204023 + MER117 DNA MER1_type 136 196 -1 268 288 43 43 chr9 39658656 39658795 -78203832 - MIR SINE MIR -61 201 63 778 167 0 38 chr9 39659486 39659618 -78203009 - FLAM_A SINE Alu -3 130 4 1703 178 0 3 chr9 39659731 39660017 -78202610 - AluJo SINE Alu -27 285 1 28 48 0 0 chr9 39661414 39661456 -78201171 + AT_rich Low_complexity Low_complexity 1 42 0 186 43 0 0 chr9 39661654 39661677 -78200950 + (T)n Simple_repeat Simple_repeat 1 23 0 318 296 25 0 chr9 39661814 39661895 -78200732 + MIR3 SINE MIR 104 186 -22 776 254 28 44 chr9 39661934 39662109 -78200518 - MIR SINE MIR 0 262 90 2067 93 7 0 chr9 39662109 39662421 -78200206 + AluSp SINE Alu 2 315 0 776 254 28 44 chr9 39662421 39662496 -78200131 - MIR SINE MIR -172 90 15 1119 195 0 43 chr9 39662509 39662719 -78199908 + MER58A DNA MER1_type 1 201 -23 1165 142 52 0 chr9 39662789 39663000 -78199627 - AluJo SINE Alu -2 310 89 340 291 0 27 chr9 39663423 39663533 -78199094 + MIR3 SINE MIR 97 203 -5 2033 122 19 41 chr9 39663896 39664181 -78198446 - MER7A DNA MER2_type -2693 345 68 1450 167 55 4 chr9 39664181 39664456 -78198171 + AluJo SINE Alu 1 289 -23 2033 122 19 41 chr9 39664456 39664490 -78198137 - MER7A DNA MER2_type -2970 68 35 1894 110 11 14 chr9 39664618 39664941 -78197686 - AluSx SINE Alu 0 322 1 2271 92 0 0 chr9 39664954 39665257 -78197370 - AluSg SINE Alu -7 303 1 2108 105 0 0 chr9 39665264 39665593 -78197034 - AluSx SINE Alu 0 329 1 245 163 47 0 chr9 39666246 39666289 -78196338 - MER103 DNA DNA -79 87 43 191 259 56 0 chr9 39667190 39667244 -78195383 - MIR SINE MIR -71 137 81 339 271 161 8 chr9 39667321 39667439 -78195188 + L3 LINE CR1 1259 1394 -183 1624 167 20 20 chr9 39668406 39668712 -78193915 + AluJo SINE Alu 3 308 -4 2025 92 39 0 chr9 39670476 39670760 -78191867 + AluSq SINE Alu 1 295 -18 483 270 81 13 chr9 39670873 39671052 -78191575 - MIR SINE MIR -54 208 18 336 308 77 53 chr9 39671021 39671229 -78191398 - MIR SINE MIR -47 215 3 * 303 303 88 67 chr9 39671565 39671803 -78190824 + L3b LINE CR1 1197 1439 -144 379 240 128 9 chr9 39672074 39672227 -78190400 - MIR SINE MIR -1 261 30 2058 124 0 0 chr9 39672227 39672526 -78190101 - AluSx SINE Alu -12 300 2 379 240 128 9 chr9 39672526 39672558 -78190069 - MIR SINE MIR -232 30 3 491 205 98 9 chr9 39674000 39674126 -78188501 - MIR SINE MIR -63 145 2 236 200 22 0 chr9 39674165 39674210 -78188417 + L3 LINE CR1 1209 1254 -323 227 194 139 69 chr9 39674600 39674672 -78187955 + MIR SINE MIR 17 93 -115 24 0 0 0 chr9 39674824 39674848 -78187779 + AT_rich Low_complexity Low_complexity 1 24 0 2042 98 0 29 chr9 39675295 39675610 -78187017 + AluSx SINE Alu 1 306 -6 663 264 123 0 chr9 39675626 39675853 -78186774 - L1MCc LINE L1 -5073 1350 1096 384 279 142 15 chr9 39675859 39676063 -78186564 - L1MCc LINE L1 -5380 1043 814 515 193 198 43 chr9 39676231 39676418 -78186209 - L1MCc LINE L1 -5955 468 253 551 122 0 0 chr9 39676479 39676561 -78186066 - AluY SINE Alu -17 294 213 272 172 9 95 chr9 39676787 39676850 -78185777 - Charlie2 DNA MER1_type -517 2345 2278 1193 183 96 37 chr9 39676850 39677058 -78185569 + MER2 DNA MER2_type 4 198 -146 2213 92 3 10 chr9 39677058 39677364 -78185263 - AluSx SINE Alu -8 304 1 2116 127 0 9 chr9 39677374 39677689 -78184938 - AluSx SINE Alu 0 312 1 1193 183 96 37 chr9 39677689 39677791 -78184836 + MER2 DNA MER2_type 206 344 0 272 172 9 95 chr9 39677791 39677843 -78184784 - Charlie2 DNA MER1_type -584 2278 2240 906 273 72 9 chr9 39677868 39678187 -78184440 - Charlie2 DNA MER1_type -2522 340 2 1525 144 0 127 chr9 39678307 39678661 -78183966 + AluJb SINE Alu 1 309 -3 198 219 171 86 chr9 39679216 39679321 -78183306 + MIR3 SINE MIR 86 199 -9 849 248 50 21 chr9 39679737 39679970 -78182657 - MIR SINE MIR 0 262 25 1473 169 0 78 chr9 39680012 39680331 -78182296 + AluJb SINE Alu 1 294 -18 912 119 0 15 chr9 39680517 39680651 -78181976 + FLAM_C SINE Alu 2 133 0 357 325 43 6 chr9 39681653 39681816 -78180811 + MER117 DNA MER1_type 1 169 -28 291 299 77 62 chr9 39681855 39682049 -78180578 - L2 LINE L2 -144 3128 2932 332 311 32 77 chr9 39682428 39682676 -78179951 - L1ME4a LINE L1 -240 5881 5645 308 271 119 95 chr9 39682705 39683000 -78179627 - L2 LINE L2 -20 3252 2951 199 309 27 91 chr9 39683104 39683124 -78179503 - L2 LINE L2 -508 2806 2786 2487 160 72 41 chr9 39683124 39683340 -78179287 + MLT1D LTR MaLR 3 211 -294 2184 82 3 0 chr9 39683340 39683692 -78178935 + AluSq SINE Alu 1 353 0 2487 160 72 41 chr9 39683692 39683962 -78178665 + MLT1D LTR MaLR 211 505 0 199 309 27 91 chr9 39683962 39684051 -78178576 - L2 LINE L2 -528 2786 2704 697 200 0 0 chr9 39684474 39684599 -78178028 + FLAM_A SINE Alu 4 128 -5 1746 123 61 4 chr9 39684651 39684928 -78177699 + AluSx SINE Alu 1 293 -19 737 93 28 19 chr9 39685133 39685241 -78177386 - AluJb SINE Alu -106 206 98 620 297 79 61 chr9 39685674 39686017 -78176610 + L2 LINE L2 2920 3268 -4 350 293 195 43 chr9 39686029 39686445 -78176182 - L2 LINE L2 -8 3305 2827 2335 56 17 13 chr9 39686548 39686850 -78175777 - AluSp SINE Alu -10 303 1 1817 143 3 13 chr9 39686922 39687222 -78175405 - AluJb SINE Alu -15 297 1 260 282 28 92 chr9 39687267 39687409 -78175218 - L2 LINE L2 -50 3222 3090 214 313 167 0 chr9 39687682 39687778 -78174849 + MIR SINE MIR 25 136 -72 798 233 0 11 chr9 39688152 39688328 -78174299 - MIR SINE MIR -48 214 41 27 29 0 0 chr9 39688988 39689022 -78173605 + AT_rich Low_complexity Low_complexity 1 34 0 841 169 6 28 chr9 39689108 39689285 -78173342 - SVA Other Other -783 603 431 420 242 174 0 chr9 39689676 39689825 -78172802 + MER104 DNA Tc2 6 180 0 1279 154 17 137 chr9 39689826 39690176 -78172451 + AluJo SINE Alu 1 308 -4 1655 131 13 67 chr9 39690355 39690669 -78171958 + AluJo SINE Alu 1 297 -15 2450 57 0 0 chr9 39691281 39691581 -78171046 + AluY SINE Alu 1 300 -11 334 244 70 94 chr9 39691595 39691796 -78170831 + L3 LINE CR1 1345 1540 -37 237 330 9 9 chr9 39692497 39692606 -78170021 - L2 LINE L2 -204 3068 2960 3362 96 32 39 chr9 39693122 39693506 -78169121 - L1PB2 LINE L1 -2 6149 5769 2078 97 33 13 chr9 39693506 39693806 -78168821 - AluSp SINE Alu -7 306 1 3362 96 32 39 chr9 39693806 39693955 -78168672 - L1PB2 LINE L1 -382 5769 5620 374 234 136 32 chr9 39694121 39694275 -78168352 + L2 LINE L2 2920 3089 -183 428 237 0 11 chr9 39694783 39694876 -78167751 + MIR SINE MIR 34 125 -83 230 258 106 113 chr9 39694998 39695254 -78167373 + L2 LINE L2 2368 2621 -693 1949 117 10 0 chr9 39695641 39695931 -78166696 - AluSx SINE Alu -14 298 6 230 212 40 10 chr9 39695938 39696037 -78166590 - Charlie7 DNA MER1_type -73 2539 2438 2238 96 0 7 chr9 39696369 39696670 -78165957 - AluSg SINE Alu -11 299 1 522 277 33 33 chr9 39696697 39696910 -78165717 + L2 LINE L2 2148 2360 -954 519 304 39 70 chr9 39696911 39697058 -78165569 + L1MEc LINE L1 36 186 -6210 2024 110 14 0 chr9 39697058 39697348 -78165279 + AluSq SINE Alu 1 294 -19 519 304 39 70 chr9 39697348 39697558 -78165069 + L1MEc LINE L1 186 382 -6014 268 331 83 41 chr9 39697697 39697842 -78164785 - L2 LINE L2 0 3272 3122 1847 99 4 4 chr9 39697921 39698174 -78164453 - AluSx SINE Alu -59 253 1 1641 185 6 31 chr9 39698175 39698500 -78164127 + L1ME2 LINE L1 5558 5874 -290 1467 183 44 4 chr9 39698501 39698619 -78164008 + AluJo SINE Alu 1 113 -200 207 88 0 0 chr9 39698619 39698653 -78163974 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1467 183 44 4 chr9 39698653 39698836 -78163791 + AluJo SINE Alu 113 313 0 747 177 21 136 chr9 39698836 39698870 -78163757 + L1ME2 LINE L1 5949 5985 -179 1717 136 28 11 chr9 39698870 39699157 -78163470 + AluJo SINE Alu 1 292 -20 747 177 21 136 chr9 39699157 39699296 -78163331 + L1ME2 LINE L1 5985 6089 -75 2243 113 0 0 chr9 39699296 39699605 -78163022 + AluSx SINE Alu 1 309 -3 747 177 21 136 chr9 39699605 39699673 -78162954 + L1ME2 LINE L1 6089 6163 -1 2118 95 0 0 chr9 39699945 39700239 -78162388 - AluY SINE Alu -15 296 3 238 317 130 25 chr9 39700240 39700401 -78162226 + L2 LINE L2 2693 2870 -444 259 300 58 17 chr9 39700529 39700649 -78161978 - L1ME3A LINE L1 -37 6133 6009 939 245 65 43 chr9 39700782 39701154 -78161473 - L1MC5 LINE L1 -426 7535 7156 447 216 56 48 chr9 39701220 39701345 -78161282 - L1MC5 LINE L1 -820 7141 7016 2239 108 0 6 chr9 39701364 39701678 -78160949 - AluSx SINE Alu 0 312 1 1914 115 31 0 chr9 39701678 39701965 -78160662 - AluSx SINE Alu -16 296 1 247 236 18 0 chr9 39701965 39702020 -78160607 - L1MC5 LINE L1 -931 7030 6975 * 3135 221 90 36 chr9 39702019 39703522 -78159105 - MSTD-int LTR MaLR -8 1727 2 1143 220 158 42 chr9 39703523 39703595 -78159032 - MSTD LTR MaLR 0 396 334 2214 80 0 29 chr9 39703595 39703909 -78158718 + AluY SINE Alu 1 305 -6 1143 220 158 42 chr9 39703909 39704191 -78158436 - MSTD LTR MaLR -62 334 1 421 229 9 18 chr9 39704340 39704449 -78158178 - L1MC5 LINE L1 -1051 6910 6803 2627 192 29 23 chr9 39704496 39704546 -78158081 - L1MD2 LINE L1 -24 6335 6287 2304 71 0 31 chr9 39704546 39704869 -78157758 + AluSp SINE Alu 1 313 0 2627 192 29 23 chr9 39704869 39705374 -78157253 - L1MD2 LINE L1 -72 6287 5777 1823 172 123 93 chr9 39705397 39705967 -78156660 - L1ME2 LINE L1 -70 6094 5508 819 186 19 6 chr9 39705978 39706139 -78156488 - FRAM SINE Alu -14 162 1 2054 211 60 13 chr9 39706140 39706296 -78156331 - L1ME2 LINE L1 -673 5489 5342 2114 108 0 23 chr9 39706296 39706603 -78156024 - AluSq SINE Alu -13 300 1 2054 211 60 13 chr9 39706603 39707135 -78155492 - L1ME2 LINE L1 -820 5342 4764 1095 205 69 39 chr9 39707153 39707456 -78155171 - L1MD2 LINE L1 -1015 5131 4816 2242 100 0 3 chr9 39707456 39707767 -78154860 - AluSx SINE Alu -2 310 1 1095 205 69 39 chr9 39707767 39707795 -78154832 - L1MD2 LINE L1 -1330 4816 4790 282 259 74 0 chr9 39707779 39707860 -78154767 - L1MC5 LINE L1 -1232 6729 6643 * 2227 78 10 3 chr9 39709736 39710031 -78152596 - AluSp SINE Alu -16 297 1 328 249 124 59 chr9 39710076 39710245 -78152382 - MER5A DNA MER1_type 0 189 10 535 169 173 0 chr9 39710324 39710451 -78152176 + MIR SINE MIR 38 188 -62 1025 334 8 19 chr9 39710476 39710853 -78151774 + MLT1I LTR MaLR 11 383 -26 22 0 0 0 chr9 39711553 39711575 -78151052 + AT_rich Low_complexity Low_complexity 1 22 0 2276 71 0 0 chr9 39711784 39712091 -78150536 + AluY SINE Alu 2 308 0 919 178 0 12 chr9 39712096 39712265 -78150362 - FRAM SINE Alu -8 168 2 233 298 38 0 chr9 39712437 39712525 -78150102 + MIR SINE MIR 65 146 -62 873 192 253 0 chr9 39712574 39712819 -78149808 - L2 LINE L2 -2 3311 3005 285 320 73 13 chr9 39712812 39712962 -78149665 - L2 LINE L2 -1095 2219 2061 * 509 241 69 35 chr9 39713434 39713579 -78149048 + L2 LINE L2 3162 3311 -2 196 330 68 23 chr9 39713695 39713783 -78148844 - L2 LINE L2 -14 3299 3208 2050 124 61 25 chr9 39713881 39714243 -78148384 + THE1C LTR MaLR 1 375 0 9897 101 38 66 chr9 39714243 39715870 -78146757 + THE1C-int LTR MaLR 1 1580 0 1988 116 79 22 chr9 39715870 39716225 -78146402 + THE1C LTR MaLR 1 375 0 311 223 316 14 chr9 39716425 39716564 -78146063 + MER5A DNA MER1_type 9 189 0 278 309 86 7 chr9 39716570 39716709 -78145918 - MIR SINE MIR -106 156 7 * 395 313 23 17 chr9 39716708 39716884 -78145743 - L2 LINE L2 -226 3046 2870 185 270 120 30 chr9 39717082 39717182 -78145445 + MIR SINE MIR 63 171 -91 1198 134 5 20 chr9 39717211 39717412 -78145215 + AluSg/x SINE Alu 110 307 -2 242 266 97 18 chr9 39718014 39718053 -78144574 - MIR SINE MIR -18 244 210 2060 137 0 6 chr9 39718053 39718367 -78144260 - AluJo SINE Alu 0 312 1 242 266 97 18 chr9 39718367 39718440 -78144187 - MIR SINE MIR -52 210 123 1167 87 0 0 chr9 39718603 39718752 -78143875 - AluSq/x SINE Alu -164 149 1 2010 119 0 0 chr9 39719133 39719411 -78143216 - AluSx SINE Alu -25 287 10 998 231 45 121 chr9 39719873 39720607 -78142020 + L1ME3A LINE L1 2466 3174 -3366 844 147 32 26 chr9 39720611 39720767 -78141860 + FRAM SINE Alu 3 159 -17 715 263 56 30 chr9 39720781 39720952 -78141675 + L1ME3A LINE L1 3172 3337 -3203 1980 118 6 16 chr9 39720952 39721266 -78141361 + AluSq SINE Alu 1 311 -2 715 263 56 30 chr9 39721266 39721523 -78141104 + L1ME3A LINE L1 3337 3611 -2929 229 304 85 36 chr9 39721613 39721636 -78140991 + L1ME3A LINE L1 3730 3750 -2790 2298 74 0 3 chr9 39721636 39721933 -78140694 + AluSc SINE Alu 1 296 -13 229 304 85 36 chr9 39721933 39722133 -78140494 + L1ME3A LINE L1 3750 3964 -2576 313 240 67 48 chr9 39722147 39722251 -78140376 + HERV16 LTR ERVL 4801 4906 -90 258 339 61 0 chr9 39722352 39722467 -78140160 + LTR16A1 LTR ERVL 1 122 -335 310 242 108 25 chr9 39722489 39722609 -78140018 + LTR16A1 LTR ERVL 328 457 0 306 0 0 0 chr9 39722638 39722672 -78139955 + (TA)n Simple_repeat Simple_repeat 2 35 0 592 246 40 21 chr9 39722677 39722776 -78139851 + L1ME3A LINE L1 5684 5780 -776 1517 162 65 14 chr9 39722776 39723066 -78139561 + AluJo SINE Alu 1 305 -7 592 246 40 21 chr9 39723066 39723238 -78139389 + L1ME3A LINE L1 5780 5950 -606 579 277 144 0 chr9 39723245 39723530 -78139097 + L1ME3A LINE L1 6019 6344 -220 971 148 41 70 chr9 39725428 39725608 -78137019 - L1MC3 LINE L1 -21 7764 7591 1879 143 0 20 chr9 39725608 39725909 -78136718 - AluJb SINE Alu -17 295 1 971 148 41 70 chr9 39725909 39725972 -78136655 - L1MC3 LINE L1 -194 7591 7528 794 224 86 62 chr9 39726103 39726393 -78136234 + MLT1I LTR MaLR 97 393 -16 371 311 129 34 chr9 39726785 39727049 -78135578 + L2 LINE L2 2977 3265 -7 300 283 150 28 chr9 39727103 39727283 -78135344 - L3 LINE CR1 -258 1319 1118 277 149 43 0 chr9 39728193 39728240 -78134387 + L1MC4 LINE L1 6794 6842 -1200 892 128 67 0 chr9 39728242 39728391 -78134236 + FRAM SINE Alu 1 158 -18 2899 226 185 12 chr9 39728398 39729428 -78133199 + L1MC4 LINE L1 6830 8038 -4 527 315 119 28 chr9 39729467 39729753 -78132874 - L3 LINE CR1 -849 728 417 212 216 118 0 chr9 39729861 39729912 -78132715 - L2 LINE L2 -4 3268 3212 2019 82 54 0 chr9 39730203 39730482 -78132145 + AluSp SINE Alu 1 294 -19 2171 89 3 26 chr9 39731265 39731578 -78131049 + AluSg SINE Alu 1 306 -4 1086 157 34 6 chr9 39731860 39732038 -78130589 - LTR28 LTR ERV1 -837 183 1 360 208 89 10 chr9 39732084 39732185 -78130442 + HsTC2 DNA Tc2 1786 1894 -4 409 240 94 0 chr9 39732213 39732309 -78130318 + FLAM_A SINE Alu 10 114 -28 1882 111 7 27 chr9 39732592 39732890 -78129737 - AluSx SINE Alu -20 292 1 1786 157 0 25 chr9 39733430 39733749 -78128878 - AluJo SINE Alu 0 312 2 594 174 138 0 chr9 39733771 39733880 -78128747 - FLAM_C SINE Alu -18 125 2 909 72 7 36 chr9 39733884 39734022 -78128605 - AluSp/q SINE Alu -22 291 158 1791 208 56 19 chr9 39734055 39734516 -78128111 - L1M1 LINE L1 -4169 3396 2919 251 154 0 19 chr9 39734893 39734945 -78127682 - L1MD3 LINE L1 -2034 5961 5911 2110 107 0 0 chr9 39734945 39735235 -78127392 + AluSx SINE Alu 1 290 -22 27 49 0 0 chr9 39735235 39735276 -78127351 + AT_rich Low_complexity Low_complexity 1 41 0 1152 182 27 9 chr9 39735280 39735505 -78127122 - L1ME1 LINE L1 -251 5915 5687 1365 164 30 112 chr9 39735541 39735846 -78126781 + AluJb SINE Alu 6 285 -27 271 326 63 11 chr9 39735848 39735943 -78126684 - MIR SINE MIR -77 131 32 3464 118 96 2 chr9 39736992 39737586 -78125041 - L1MA4A LINE L1 -198 6105 5456 335 297 8 34 chr9 39737592 39737710 -78124917 + L2 LINE L2 2332 2446 -868 356 277 186 5 chr9 39737718 39737906 -78124721 + L2 LINE L2 2638 2859 -455 753 183 22 33 chr9 39738086 39738266 -78124361 - AluJ SINE Alu -11 301 124 197 380 14 0 chr9 39738331 39738402 -78124225 + L2 LINE L2 3136 3207 -65 235 250 44 0 chr9 39738424 39738492 -78124135 - MIR SINE MIR -9 253 183 201 231 115 0 chr9 39738499 39738551 -78124076 + L2 LINE L2 3214 3271 -1 425 327 15 40 chr9 39738573 39738772 -78123855 - L3 LINE CR1 -134 1443 1250 1921 180 114 47 chr9 39839139 39839629 -78022998 + LTR12 LTR ERV1 192 714 0 474 145 195 101 chr9 39839637 39839796 -78022831 - MER4D LTR ERV1 -623 249 76 2152 123 37 33 chr9 39839809 39840265 -78022362 - pTR5 LTR ERV1 -1238 1200 743 854 143 61 66 chr9 39840265 39840461 -78022166 + MER4E LTR ERV1 157 351 -428 26 64 0 0 chr9 39840947 39840994 -78021633 + AT_rich Low_complexity Low_complexity 1 47 0 815 120 0 0 chr9 39840994 39841111 -78021516 - AluJ SINE Alu -195 117 1 2319 53 13 0 chr9 39841175 39841474 -78021153 - AluY SINE Alu -8 303 1 553 308 193 26 chr9 39841858 39842284 -78020343 + L2 LINE L2 2805 3301 -12 237 214 0 0 chr9 39842323 39842365 -78020262 + L2 LINE L2 3262 3303 -10 296 185 259 0 chr9 39843194 39843275 -78019352 - MIR SINE MIR -111 151 50 2157 109 0 7 chr9 39843282 39843584 -78019043 + AluSq SINE Alu 1 300 -13 382 249 32 74 chr9 39844316 39844452 -78018175 - MIR SINE MIR -65 143 43 281 250 180 40 chr9 39844926 39845026 -78017601 + L2 LINE L2 3155 3268 -4 430 220 129 38 chr9 39847625 39847757 -78014870 + MIR SINE MIR 13 156 -106 2047 97 38 3 chr9 39847763 39848052 -78014575 - AluSx SINE Alu -13 299 1 955 178 18 0 chr9 39848055 39848218 -78014409 - FRAM SINE Alu 0 166 1 351 0 0 0 chr9 39848409 39848448 -78014179 + (A)n Simple_repeat Simple_repeat 1 39 0 201 294 24 71 chr9 39848646 39848731 -78013896 + MIR SINE MIR 168 248 -14 296 209 7 196 chr9 39848955 39849049 -78013578 + MER5A DNA MER1_type 57 113 -76 2090 132 0 0 chr9 39849049 39849352 -78013275 - AluSx SINE Alu -9 303 1 296 209 7 196 chr9 39849352 39849410 -78013217 + MER5A DNA MER1_type 113 180 -9 198 0 0 0 chr9 39849559 39849581 -78013046 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 593 277 94 98 chr9 39849819 39850360 -78012267 - L2 LINE L2 0 3272 2726 378 0 0 0 chr9 39850476 39850518 -78012109 + (TG)n Simple_repeat Simple_repeat 2 43 0 226 243 66 59 chr9 39850742 39850878 -78011749 + L2 LINE L2 2948 3084 -188 344 253 19 67 chr9 39852243 39852375 -78010252 + MER5A DNA MER1_type 6 144 -45 333 286 27 54 chr9 39852259 39852406 -78010221 - MER5A DNA MER1_type -23 166 24 * 215 329 67 13 chr9 39852554 39852703 -78009924 + L2 LINE L2 2681 2837 -477 269 343 60 36 chr9 39853097 39853263 -78009364 + L2 LINE L2 2950 3119 -153 1090 208 45 49 chr9 39853300 39853330 -78009297 - MER63B DNA MER1_type -749 313 284 2043 128 3 0 chr9 39853330 39853634 -78008993 + AluSx SINE Alu 1 305 -7 1090 208 45 49 chr9 39853634 39853911 -78008716 - MER63B DNA MER1_type -778 284 7 2300 95 3 0 chr9 39854122 39854427 -78008200 - AluSq SINE Alu -7 306 1 315 121 0 0 chr9 39855083 39855141 -78007486 + (CA)n Simple_repeat Simple_repeat 1 58 0 926 102 7 7 chr9 39855419 39855556 -78007071 - AluSp/q SINE Alu -12 301 165 235 117 0 33 chr9 39855738 39855798 -78006829 + (TG)n Simple_repeat Simple_repeat 1 58 0 2067 73 4 7 chr9 39855912 39856187 -78006440 + AluY SINE Alu 23 296 -15 244 271 14 14 chr9 39858150 39858220 -78004407 + L2 LINE L2 3188 3257 -15 400 266 25 57 chr9 39859101 39859259 -78003368 + MER5A DNA MER1_type 14 166 -23 318 329 7 48 chr9 39859128 39859274 -78003353 - MER5B DNA MER1_type -30 148 9 * 496 260 96 6 chr9 39859971 39860150 -78002477 + MIR SINE MIR 41 234 -28 260 243 100 0 chr9 39860202 39860272 -78002355 + MIR SINE MIR 67 143 -65 1979 148 0 3 chr9 39860290 39860601 -78002026 - AluSx SINE Alu -2 310 1 360 290 142 6 chr9 39860656 39860825 -78001802 + MIR3 SINE MIR 11 202 -6 332 250 38 12 chr9 39861531 39861611 -78001016 - L1MC4a LINE L1 -1874 5934 5853 385 211 50 55 chr9 39862010 39862149 -78000478 + MIR SINE MIR 20 168 -62 1995 130 7 7 chr9 39862782 39863090 -77999537 - AluSx SINE Alu -4 308 1 342 95 4 13 chr9 39863094 39863160 -77999467 - AluSq/x SINE Alu -169 133 87 2224 104 0 0 chr9 39863211 39863510 -77999117 - AluSx SINE Alu -13 299 1 458 285 30 75 chr9 39863637 39863904 -77998723 + L2 LINE L2 2877 3131 -182 758 255 85 6 chr9 39863914 39864113 -77998514 + MIR SINE MIR 38 250 -12 383 276 55 48 chr9 39864126 39864271 -77998356 + L2 LINE L2 3163 3308 -5 181 225 0 0 chr9 39864536 39864576 -77998051 - L2 LINE L2 -18 3254 3215 270 348 114 23 chr9 39864686 39864726 -77997901 + L2 LINE L2 2639 2674 -640 985 197 161 0 chr9 39864726 39864919 -77997708 + MER58A DNA MER1_type 1 224 0 270 348 114 23 chr9 39864919 39865177 -77997450 + L2 LINE L2 2674 2964 -350 2081 102 0 3 chr9 39865457 39865774 -77996853 - AluSx SINE Alu 0 316 1 195 132 79 0 chr9 39865807 39865845 -77996782 + MIR SINE MIR 212 252 -10 * 203 245 20 20 chr9 39865811 39865860 -77996767 + L2 LINE L2 3222 3270 -2 570 243 115 40 chr9 39866304 39866530 -77996097 + MIR SINE MIR 2 244 -18 301 312 11 11 chr9 39866690 39866783 -77995844 + (TG)n Simple_repeat Simple_repeat 2 94 0 187 328 45 99 chr9 39867053 39867385 -77995242 + L2 LINE L2 2866 3179 -93 240 182 0 23 chr9 39867605 39867649 -77994978 + MIR SINE MIR 87 129 -79 1550 157 11 21 chr9 39868021 39868165 -77994462 - AluSx SINE Alu -35 277 136 2224 93 6 19 chr9 39868165 39868478 -77994149 - AluSx SINE Alu -3 309 1 1550 157 11 21 chr9 39868478 39868613 -77994014 - AluSx SINE Alu -176 136 1 1071 39 0 0 chr9 39869283 39869411 -77993216 + L1PA3 LINE L1 6028 6155 0 1319 132 0 5 chr9 39869577 39869782 -77992845 + AluSg/x SINE Alu 95 298 -12 565 174 20 0 chr9 39869861 39869959 -77992668 - AluSg/x SINE Alu -9 301 202 766 335 99 34 chr9 39870250 39870808 -77991819 - L1ME4a LINE L1 -174 5947 5354 1740 78 0 0 chr9 39871294 39871512 -77991115 - AluSc SINE Alu -21 288 71 2257 61 0 17 chr9 39871512 39871806 -77990821 - AluY SINE Alu -20 291 1 618 96 0 0 chr9 39871806 39871889 -77990738 - AluSc SINE Alu -225 84 2 281 295 116 31 chr9 39872409 39872538 -77990089 + MIR SINE MIR 1 140 -122 302 302 112 17 chr9 39873497 39873613 -77989014 + MIR3 SINE MIR 73 199 -9 2090 131 0 0 chr9 39874509 39874807 -77987820 + AluSx SINE Alu 1 298 -14 408 88 0 0 chr9 39874818 39874875 -77987752 + (CA)n Simple_repeat Simple_repeat 2 58 0 702 305 214 18 chr9 39874893 39875290 -77987337 + L3 LINE CR1 244 718 -859 814 298 83 52 chr9 39875799 39876246 -77986381 + L3 LINE CR1 760 1220 -357 205 270 0 63 chr9 39876312 39876375 -77986252 + L3 LINE CR1 1368 1426 -151 305 342 92 27 chr9 39876794 39876978 -77985649 + MIR SINE MIR 6 201 -61 2049 116 0 3 chr9 39877241 39877612 -77985015 + AluSx SINE Alu 1 370 0 185 206 0 16 chr9 39878489 39878552 -77984075 + (TA)n Simple_repeat Simple_repeat 1 62 0 1226 169 94 12 chr9 39878606 39878860 -77983767 - AluJb SINE Alu -37 275 1 285 316 120 10 chr9 39878886 39879187 -77983440 - L1ME4a LINE L1 -1314 4832 4499 834 301 71 64 chr9 39879253 39879533 -77983094 - L1ME4a LINE L1 -2905 3241 2954 2008 143 0 0 chr9 39879533 39879833 -77982794 + AluSq SINE Alu 1 300 -13 834 301 71 64 chr9 39879833 39880071 -77982556 - L1ME4a LINE L1 -3192 2954 2719 236 308 85 54 chr9 39880361 39880491 -77982136 - MIR SINE MIR -50 212 79 2156 101 24 0 chr9 39881208 39881504 -77981123 - AluSg SINE Alu -7 303 1 1006 127 0 0 chr9 39882604 39882754 -77979873 - AluSg/x SINE Alu 0 312 163 474 172 0 0 chr9 39882754 39882841 -77979786 + FLAM_C SINE Alu 54 140 -3 22 0 0 0 chr9 39882891 39882913 -77979714 + AT_rich Low_complexity Low_complexity 1 22 0 247 360 10 20 chr9 39883352 39883452 -77979175 + L2 LINE L2 3155 3253 -19 199 271 0 71 chr9 39885068 39885138 -77977489 - L2 LINE L2 -212 3060 2996 202 274 20 0 chr9 39885150 39885201 -77977426 + L2 LINE L2 3217 3268 -4 414 57 0 0 chr9 39885203 39885256 -77977371 + (TGGA)n Simple_repeat Simple_repeat 4 56 0 1518 150 68 14 chr9 39886171 39886493 -77976134 - AluSx SINE Alu 0 312 1 1006 184 139 12 chr9 39886675 39886920 -77975707 + AluSg SINE Alu 25 300 -10 491 298 59 97 chr9 39886927 39887507 -77975120 + L1MB7 LINE L1 4106 4663 -1483 582 262 47 37 chr9 39887521 39887712 -77974915 - MIR SINE MIR 0 262 70 1465 148 69 10 chr9 39887765 39888070 -77974557 - Charlie5 DNA MER1_type 0 2624 2302 2766 159 80 19 chr9 39888165 39888731 -77973896 + L1MB8 LINE L1 5578 6177 -1 247 361 62 0 chr9 39889160 39889257 -77973370 + L2 LINE L2 3150 3252 -20 208 361 64 68 chr9 39889714 39889980 -77972647 + L2 LINE L2 3008 3272 0 448 291 206 20 chr9 39890235 39890686 -77971941 + L2 LINE L2 2431 2965 -349 492 99 0 0 chr9 39890705 39890776 -77971851 + (CA)n Simple_repeat Simple_repeat 2 72 0 284 175 35 18 chr9 39892300 39892357 -77970270 + MER4-int LTR ERV1 1099 1156 -5442 248 348 11 0 chr9 39892360 39892452 -77970175 + (TG)n Simple_repeat Simple_repeat 2 94 0 2191 122 0 0 chr9 39892628 39892922 -77969705 + AluSx SINE Alu 5 298 -14 2259 109 10 13 chr9 39893072 39893205 -77969422 + AluSx SINE Alu 1 133 -179 2355 100 0 10 chr9 39893205 39893515 -77969112 + AluSp SINE Alu 1 307 -6 2259 109 10 13 chr9 39893515 39893694 -77968933 + AluSx SINE Alu 133 312 0 256 265 52 102 chr9 39893744 39894069 -77968558 + L1MB7 LINE L1 4779 5087 -1059 2256 104 3 0 chr9 39894122 39894409 -77968218 - AluSg SINE Alu -22 288 1 1810 68 0 17 chr9 39894647 39894884 -77967743 - AluY SINE Alu 0 311 79 305 157 0 6 chr9 39894884 39894948 -77967679 - AluY SINE Alu -257 42 1 520 302 83 84 chr9 39895766 39896424 -77966203 - L2 LINE L2 -10 3303 2650 194 286 101 8 chr9 39896464 39896583 -77966044 - L2 LINE L2 -773 2541 2412 2178 188 11 0 chr9 39896943 39897315 -77965312 + L1MB7 LINE L1 5376 5751 -433 387 0 0 0 chr9 39897326 39897369 -77965258 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 739 120 28 237 chr9 39897389 39897680 -77964947 + L1MB7 LINE L1 5737 5966 -218 826 149 81 7 chr9 39897680 39897828 -77964799 + AluJb SINE Alu 142 300 -12 688 169 8 0 chr9 39897828 39897946 -77964681 + L1MB7 LINE L1 5964 6082 -102 467 160 69 137 chr9 39897990 39898165 -77964462 + MER103 DNA DNA 2 164 -2 192 260 120 0 chr9 39898776 39898826 -77963801 + MIR SINE MIR 86 141 -67 222 105 0 0 chr9 39899234 39899272 -77963355 + (TG)n Simple_repeat Simple_repeat 2 39 0 243 313 0 0 chr9 39899290 39899373 -77963254 + (TG)n Simple_repeat Simple_repeat 1 83 0 197 236 9 0 chr9 39899572 39899678 -77962949 + (TG)n Simple_repeat Simple_repeat 2 108 0 383 79 127 0 chr9 39900511 39900574 -77962053 + L1MB1 LINE L1 6098 6168 0 2210 98 0 11 chr9 39900682 39900995 -77961632 - AluSx SINE Alu 0 312 3 1259 163 34 0 chr9 39901007 39901246 -77961381 - L1MD3 LINE L1 -1 7994 7748 4961 266 91 26 chr9 39901339 39901543 -77961084 + HAL1 LINE L1 407 596 -1911 2041 175 73 5 chr9 39901543 39901914 -77960713 + MSTD LTR MaLR 1 396 0 4961 266 91 26 chr9 39901914 39903640 -77958987 + HAL1 LINE L1 596 2463 -44 753 272 65 30 chr9 39903838 39904176 -77958451 - L1ME4a LINE L1 -237 5884 5535 277 208 10 40 chr9 39904367 39904468 -77958159 + (TA)n Simple_repeat Simple_repeat 1 98 0 23 0 0 0 chr9 39904470 39904493 -77958134 + AT_rich Low_complexity Low_complexity 1 23 0 253 264 33 11 chr9 39904652 39904743 -77957884 - L1MC4a LINE L1 -1876 5932 5840 231 316 35 12 chr9 39904745 39904916 -77957711 - L1M3 LINE L1 -730 5441 5267 415 334 54 61 chr9 39905216 39905608 -77957019 + L3 LINE CR1 1165 1553 -24 416 281 84 57 chr9 39906239 39906502 -77956125 - L3 LINE CR1 -164 1413 1144 2445 56 0 30 chr9 39906952 39907256 -77955371 - AluY SINE Alu -16 295 1 1993 145 3 3 chr9 39907564 39907861 -77954766 + AluJb SINE Alu 1 297 -15 406 367 92 3 chr9 39907864 39908158 -77954469 + L2 LINE L2 2454 2773 -541 481 251 183 6 chr9 39908205 39908380 -77954247 - MIR SINE MIR -9 253 48 194 204 45 114 chr9 39909139 39909227 -77953400 + MIR SINE MIR 108 189 -73 1997 149 11 30 chr9 39909370 39909738 -77952889 + L1MB7 LINE L1 5805 6165 -19 543 191 60 2 chr9 39909885 39910002 -77952625 - MER5A DNA MER1_type -23 166 33 216 250 78 16 chr9 39910014 39910078 -77952549 + MIR3 SINE MIR 12 79 -129 251 289 52 10 chr9 39910321 39910418 -77952209 - MIR SINE MIR -71 191 91 221 200 176 56 chr9 39910752 39910877 -77951750 + L2 LINE L2 3172 3311 -2 2037 143 0 9 chr9 39911374 39911689 -77950938 - AluSx SINE Alu 0 312 1 319 282 43 8 chr9 39912806 39912923 -77949704 + MIR SINE MIR 20 140 -68 1508 203 18 6 chr9 39912930 39913260 -77949367 + L1MB8 LINE L1 5839 6172 -6 616 220 26 63 chr9 39913866 39914057 -77948570 - L2 LINE L2 -1 3312 3129 2440 104 0 0 chr9 39914057 39914365 -77948262 + AluSx SINE Alu 2 309 -3 370 252 148 48 chr9 39914968 39915178 -77947449 + MIR SINE MIR 17 247 -15 234 315 83 50 chr9 39915651 39915832 -77946795 - L2 LINE L2 -49 3223 3037 304 292 64 81 chr9 39917014 39917196 -77945431 + L2 LINE L2 2419 2594 -720 1930 138 14 0 chr9 39917196 39917486 -77945141 - AluSx SINE Alu -14 298 5 304 292 64 81 chr9 39917486 39917649 -77944978 + L2 LINE L2 2594 2758 -556 856 233 4 75 chr9 39917683 39917716 -77944911 + MIR SINE MIR 28 62 -200 2646 94 8 0 chr9 39917716 39918068 -77944559 + THE1A LTR MaLR 1 355 0 12501 81 1 0 chr9 39918068 39919646 -77942981 + THE1A-int LTR MaLR 1 1580 0 2426 78 69 0 chr9 39919646 39919978 -77942649 + THE1A LTR MaLR 1 355 0 856 233 4 75 chr9 39919978 39920195 -77942432 + MIR SINE MIR 59 262 0 1103 132 36 59 chr9 39920396 39920616 -77942011 - L1MB8 LINE L1 0 6178 5964 2233 114 0 0 chr9 39920644 39920941 -77941686 - AluSx SINE Alu -10 302 6 342 351 160 13 chr9 39920956 39921187 -77941440 + L2 LINE L2 3007 3271 -1 254 344 16 16 chr9 39921862 39921987 -77940640 + L2 LINE L2 2661 2785 -529 2500 70 3 6 chr9 39922607 39922920 -77939707 - AluSp SINE Alu -1 312 1 716 205 114 0 chr9 39923149 39923315 -77939312 - MER5A DNA MER1_type 0 189 5 401 287 66 22 chr9 39923497 39923678 -77938949 + MIR3 SINE MIR 12 200 -8 397 217 25 57 chr9 39924645 39924802 -77937825 - MIR SINE MIR -63 199 48 1786 118 24 37 chr9 39924924 39925220 -77937407 - AluSx SINE Alu -8 304 13 1980 152 0 7 chr9 39925387 39925690 -77936937 + AluSx SINE Alu 1 301 -11 225 277 31 0 chr9 39926420 39926485 -77936142 + L2 LINE L2 3234 3300 -13 654 232 108 2 chr9 39927694 39927898 -77934729 - L1MC/D LINE L1 -400 5721 5540 2431 52 13 0 chr9 39928126 39928432 -77934195 + L1PA8 LINE L1 5849 6158 -14 252 77 0 0 chr9 39928432 39928471 -77934156 + (CATA)n Simple_repeat Simple_repeat 2 40 0 2283 134 6 6 chr9 39928735 39929077 -77933550 - MER2 DNA MER2_type -1 343 2 217 302 26 43 chr9 39929150 39929266 -77933361 - L2 LINE L2 -262 3010 2897 211 215 139 51 chr9 39930264 39930343 -77932284 + L2 LINE L2 3137 3222 -50 1590 190 114 43 chr9 39930364 39930703 -77931924 + MSTD LTR MaLR 2 370 -26 1093 77 0 184 chr9 39930703 39930936 -77931691 + 7SK RNA RNA 1 190 -3 1590 190 114 43 chr9 39930936 39930965 -77931662 + MSTD LTR MaLR 370 396 0 343 213 157 9 chr9 39930994 39931102 -77931525 - MIR3 SINE MIR -17 191 68 271 184 40 53 chr9 39931214 39931290 -77931337 - L3 LINE CR1 -246 1331 1257 183 186 47 0 chr9 39931929 39931972 -77930655 - L2 LINE L2 -86 3186 3142 199 305 200 0 chr9 39932344 39932449 -77930178 + L2 LINE L2 2934 3059 -213 183 42 0 0 chr9 39932812 39932836 -77929791 + (T)n Simple_repeat Simple_repeat 1 24 0 1383 218 125 52 chr9 39933548 39933587 -77929040 + MLT1D LTR MaLR 8 43 -462 1643 180 21 18 chr9 39933587 39933892 -77928735 + AluJo SINE Alu 1 306 0 1383 218 125 52 chr9 39933892 39934315 -77928312 + MLT1D LTR MaLR 43 505 0 429 271 28 65 chr9 39934633 39934847 -77927780 + L3 LINE CR1 1210 1415 -162 2399 88 0 3 chr9 39936949 39937255 -77925372 + AluSg SINE Alu 1 305 -5 183 42 0 0 chr9 39937822 39937846 -77924781 + (CAG)n Simple_repeat Simple_repeat 2 25 0 272 308 58 0 chr9 39937992 39938096 -77924531 + L2 LINE L2 2878 2987 -285 878 285 14 2 chr9 39938102 39938352 -77924275 - MIR SINE MIR -10 252 3 577 257 105 40 chr9 39938401 39938705 -77923922 + L2 LINE L2 2989 3312 -1 1147 163 19 47 chr9 39938779 39938994 -77923633 - AluJo SINE Alu -18 294 86 340 309 216 10 chr9 39939441 39939635 -77922992 - MIR SINE MIR 0 262 29 188 308 31 0 chr9 39939928 39939993 -77922634 + L2 LINE L2 3184 3250 -63 276 218 122 70 chr9 39940897 39941053 -77921574 - MIR3 SINE MIR -15 193 30 182 303 43 64 chr9 39941216 39941404 -77921223 - MIR3 SINE MIR -11 197 14 26 0 0 0 chr9 39941827 39941853 -77920774 + GC_rich Low_complexity Low_complexity 1 26 0 27 81 0 0 chr9 39941884 39941946 -77920681 + GC_rich Low_complexity Low_complexity 1 62 0 216 247 37 12 chr9 39942065 39942146 -77920481 - MIR SINE MIR -77 131 49 294 350 111 21 chr9 39942292 39942572 -77920055 + L2 LINE L2 1971 2275 -1039 * 527 308 106 47 chr9 39942568 39942889 -77919738 - L2 LINE L2 -20 3252 2913 416 56 28 14 chr9 39943442 39943513 -77919114 + L1MD2 LINE L1 6287 6358 -1 535 354 113 18 chr9 39943847 39944407 -77918220 + L2 LINE L2 2247 2859 -455 584 285 27 11 chr9 39944463 39944649 -77917978 + MIR SINE MIR 6 194 -68 369 295 31 23 chr9 39944696 39944825 -77917802 - MIR SINE MIR -77 185 56 2351 57 3 10 chr9 39945223 39945524 -77917103 - AluY SINE Alu -12 299 1 247 316 133 10 chr9 39946299 39946397 -77916230 + MIR3 SINE MIR 97 206 -2 193 162 27 0 chr9 39946413 39946450 -77916177 - L2 LINE L2 0 3313 3276 422 310 13 13 chr9 39946708 39946866 -77915761 + MIR3 SINE MIR 48 205 -3 409 248 81 67 chr9 39947928 39948077 -77914550 - MIR SINE MIR -65 197 47 299 246 29 0 chr9 39948617 39948686 -77913941 - MER91A DNA MER1_type 0 190 120 * 487 320 96 6 chr9 39948678 39948834 -77913793 - MER91A DNA MER1_type -22 174 5 607 355 62 48 chr9 39949015 39949561 -77913066 + HAL1 LINE L1 817 1370 -1137 1175 156 13 119 chr9 39949648 39950027 -77912600 + L1MDa LINE L1 2273 2611 -3929 516 204 227 0 chr9 39950149 39950325 -77912302 - MIR SINE MIR -8 254 39 252 247 31 52 chr9 39950334 39950431 -77912196 - L2 LINE L2 -261 3011 2917 206 260 83 10 chr9 39951430 39951526 -77911101 + L2 LINE L2 2393 2495 -819 183 375 12 0 chr9 39951545 39951625 -77911002 + L2 LINE L2 2474 2554 -760 418 219 24 0 chr9 39951684 39951766 -77910861 - L1MC2 LINE L1 -9 6335 6252 486 272 122 0 chr9 39951876 39952056 -77910571 + L2 LINE L2 2855 3056 -257 228 333 13 0 chr9 39952780 39952855 -77909772 - MIR SINE MIR -86 122 47 348 254 169 0 chr9 39952955 39953073 -77909554 - MIR SINE MIR -37 225 88 204 316 90 30 chr9 39953341 39953474 -77909153 + L3 LINE CR1 1264 1404 -173 1856 136 7 39 chr9 39954071 39954380 -77908247 + AluJb SINE Alu 1 299 -13 221 336 122 15 chr9 39954434 39954565 -77908062 - MIR3 SINE MIR -59 149 5 181 318 0 0 chr9 39955019 39955082 -77907545 + L2 LINE L2 2725 2787 -527 190 297 16 0 chr9 39955260 39955324 -77907303 - MIR SINE MIR -63 145 81 555 226 40 8 chr9 39956463 39956587 -77906040 + L2 LINE L2 3185 3312 -1 1287 296 184 9 chr9 39956748 39957749 -77904878 + L2 LINE L2 2038 3219 -94 937 193 6 0 chr9 39959429 39959600 -77903027 + FRAM SINE Alu 1 171 -5 1803 157 7 7 chr9 39959622 39959921 -77902706 + AluJo SINE Alu 1 299 -13 553 304 95 75 chr9 39960233 39960436 -77902191 + L2 LINE L2 2839 3036 -277 2228 99 10 0 chr9 39960436 39960740 -77901887 - AluSx SINE Alu 0 312 6 553 304 95 75 chr9 39960740 39960977 -77901650 + L2 LINE L2 3036 3288 -25 187 219 38 19 chr9 39961575 39961636 -77900991 - MIR SINE MIR -65 143 90 396 244 110 8 chr9 39961883 39962010 -77900617 - MIR3 SINE MIR -26 182 43 405 335 133 21 chr9 39962233 39962615 -77900012 + L3 LINE CR1 1083 1507 -70 218 253 80 18 chr9 39963649 39963763 -77898864 + MIR SINE MIR 35 153 -71 224 279 184 27 chr9 39963909 39964056 -77898571 + MIR3 SINE MIR 39 208 0 244 350 79 43 chr9 39964795 39965163 -77897464 - L2 LINE L2 -5 3267 2887 230 305 37 37 chr9 39965380 39965462 -77897165 - MIR3 SINE MIR -18 190 109 234 349 33 46 chr9 39967097 39967249 -77895378 + MIR SINE MIR 19 168 -40 197 340 90 7 chr9 39967340 39967484 -77895143 + MIR3 SINE MIR 44 199 -9 588 269 130 18 chr9 39968364 39968587 -77894040 + MIR SINE MIR 9 256 -6 199 246 43 29 chr9 39968864 39968933 -77893694 + MIR SINE MIR 83 152 -110 262 326 47 0 chr9 39969099 39969185 -77893442 - MIR3 SINE MIR -24 184 95 282 268 18 89 chr9 39969680 39969792 -77892835 + MIR3 SINE MIR 1 104 -104 294 312 55 22 chr9 39970420 39970579 -77892048 - MIR3 SINE MIR -61 147 8 209 336 164 8 chr9 39971906 39972040 -77890587 - MIR3 SINE MIR -20 188 34 25 0 0 0 chr9 39972485 39972510 -77890117 + AT_rich Low_complexity Low_complexity 1 25 0 195 289 81 40 chr9 39972670 39972843 -77889784 - L2 LINE L2 -74 3198 3019 372 164 16 0 chr9 39973090 39973151 -77889476 + U7 snRNA snRNA 1 62 -1 212 260 40 0 chr9 39973307 39973357 -77889270 + L2 LINE L2 3207 3258 -14 341 287 79 18 chr9 39973449 39973613 -77889014 + L1ME4a LINE L1 5937 6110 -11 1839 80 0 50 chr9 39973615 39973903 -77888724 - AluSx SINE Alu 0 310 36 528 222 179 31 chr9 39974079 39974241 -77888386 + MIR SINE MIR 5 190 -72 1757 136 0 11 chr9 39975265 39975537 -77887090 + AluJo SINE Alu 8 276 -36 574 338 143 7 chr9 39975780 39976205 -77886422 + L3 LINE CR1 1049 1532 -45 292 190 17 0 chr9 39976205 39976263 -77886364 - MER5A DNA MER1_type -3 186 128 239 214 225 34 chr9 39976552 39976641 -77885986 - MIR3 SINE MIR -34 174 112 4433 184 27 40 chr9 39976864 39976944 -77885683 - L1MA9 LINE L1 -29 6283 6204 1462 202 0 11 chr9 39976944 39977221 -77885406 + AluJo SINE Alu 1 274 -38 4433 184 27 40 chr9 39977221 39977555 -77885072 - L1MA9 LINE L1 -108 6204 5867 2289 86 30 0 chr9 39977555 39977859 -77884768 - AluSq SINE Alu 0 313 1 4433 184 27 40 chr9 39977859 39979173 -77883454 - L1MA9 LINE L1 -445 5867 4579 284 272 80 20 chr9 39979554 39979702 -77882925 + MIR3 SINE MIR 94 250 -12 1806 158 13 7 chr9 39979739 39980037 -77882590 - AluJb SINE Alu -12 300 1 183 241 149 0 chr9 39980114 39980201 -77882426 - MIR SINE MIR -78 130 31 216 307 40 0 chr9 39981148 39981223 -77881404 - MIR SINE MIR -70 192 115 584 184 158 53 chr9 39981248 39981438 -77881189 - MER20 DNA MER1_type -9 210 1 188 196 54 36 chr9 39981708 39981764 -77880863 - MIR SINE MIR -59 149 93 197 178 22 0 chr9 39981897 39981942 -77880685 + GA-rich Low_complexity Low_complexity 2 47 0 217 231 70 0 chr9 39982766 39982854 -77879773 + MIR SINE MIR 85 183 -25 249 317 62 0 chr9 39983269 39983402 -77879225 + MIR SINE MIR 37 183 -69 288 130 0 0 chr9 39984700 39984746 -77877881 + (TGGA)n Simple_repeat Simple_repeat 1 46 0 400 329 116 23 chr9 39984970 39985186 -77877441 + MIR SINE MIR 27 262 0 190 291 101 7 chr9 39985957 39986105 -77876522 + MIR3 SINE MIR 26 187 -21 259 247 56 11 chr9 39986698 39986787 -77875840 + MIR SINE MIR 33 125 -83 200 284 45 0 chr9 39986969 39987036 -77875591 - L3 LINE CR1 -2 1575 1506 180 288 0 45 chr9 39987150 39987216 -77875411 + MIR3 SINE MIR 10 72 -136 439 230 171 0 chr9 39989232 39989384 -77873243 - MLT1J LTR MaLR -333 178 1 540 0 0 0 chr9 39989523 39989583 -77873044 + (TTTTG)n Simple_repeat Simple_repeat 2 61 0 207 114 0 0 chr9 39990526 39990561 -77872066 + (TG)n Simple_repeat Simple_repeat 1 35 0 242 289 26 0 chr9 39991132 39991208 -77871419 - MIR SINE MIR -121 141 64 267 146 0 73 chr9 39991327 39991437 -77871190 + (CA)n Simple_repeat Simple_repeat 1 102 0 1586 166 7 10 chr9 39993970 39994265 -77868362 - AluJb SINE Alu -5 307 14 327 254 250 41 chr9 39994497 39994717 -77867910 - L2 LINE L2 -4 3268 3003 199 231 0 0 chr9 39995769 39995821 -77866806 - MIR SINE MIR -80 128 77 2204 93 3 0 chr9 39996523 39996823 -77865804 + AluSx SINE Alu 1 301 -11 2026 109 28 0 chr9 39996844 39997129 -77865498 + AluSx SINE Alu 1 293 -19 448 255 143 24 chr9 39997170 39997425 -77865202 - L1ME4a LINE L1 -57 6064 5841 2232 101 0 0 chr9 39997425 39997723 -77864904 - AluSq SINE Alu -15 298 1 448 255 143 24 chr9 39997723 39997929 -77864698 - L1ME4a LINE L1 -280 5841 5517 284 333 113 0 chr9 39998363 39998513 -77864114 + MIR SINE MIR 61 227 -35 1972 98 0 0 chr9 39998865 39999130 -77863497 + AluSq SINE Alu 1 265 -48 296 208 0 0 chr9 39999342 39999395 -77863232 + L2 LINE L2 3256 3308 -5 1712 149 0 36 chr9 39999512 39999813 -77862814 + AluJb SINE Alu 1 290 -22 2176 113 0 3 chr9 39999815 40000126 -77862501 + AluSx SINE Alu 1 310 -2 233 330 107 9 chr9 40000435 40000547 -77862080 - MIR SINE MIR -61 147 25 349 333 0 0 chr9 40000599 40000695 -77861932 - MER5A DNA MER1_type -44 145 50 205 276 51 51 chr9 40001550 40001648 -77860979 - MER5A DNA MER1_type -6 183 86 510 165 0 51 chr9 40001655 40001831 -77860796 + (TA)n Simple_repeat Simple_repeat 2 168 0 1720 135 38 0 chr9 40001837 40002104 -77860523 - AluJb SINE Alu -23 289 13 268 230 294 48 chr9 40002146 40002272 -77860355 - MER5A DNA MER1_type 0 189 33 490 184 68 142 chr9 40002359 40002549 -77860078 + MER5B DNA MER1_type 3 178 0 277 264 99 99 chr9 40003279 40003612 -77859015 - L2 LINE L2 -5 3267 2935 195 281 51 84 chr9 40003646 40003824 -77858803 - L2 LINE L2 -463 2851 2680 275 315 57 0 chr9 40005084 40005202 -77857425 - MIR SINE MIR -64 144 20 273 208 42 83 chr9 40006238 40006334 -77856293 - MIR3 SINE MIR -14 194 103 2163 93 7 3 chr9 40008390 40008681 -77853946 + AluSx SINE Alu 1 292 -20 1513 153 17 33 chr9 40008700 40009000 -77853627 + AluJb SINE Alu 5 299 -13 1239 122 146 76 chr9 40009151 40009394 -77853233 + AluJo SINE Alu 5 230 -82 1934 120 3 17 chr9 40009394 40009694 -77852933 - AluSc SINE Alu -13 296 1 1239 122 146 76 chr9 40009694 40009721 -77852906 + AluJo SINE Alu 230 254 -58 886 143 0 0 chr9 40009721 40009854 -77852773 + FLAM_C SINE Alu 1 133 0 1239 122 146 76 chr9 40009854 40009870 -77852757 + AluJo SINE Alu 254 312 0 668 325 46 69 chr9 40009915 40010207 -77852420 + L1 LINE L1 3419 3697 -2449 1580 162 62 0 chr9 40010207 40010479 -77852148 + AluJo SINE Alu 14 302 -10 668 325 46 69 chr9 40010479 40010666 -77851961 + L1 LINE L1 3697 3887 -2259 620 300 103 21 chr9 40010676 40010909 -77851718 - MIR SINE MIR -3 259 8 1864 140 3 40 chr9 40011113 40011289 -77851338 - AluSx SINE Alu -2 310 150 2341 81 3 0 chr9 40011289 40011585 -77851042 - AluSp SINE Alu -16 297 1 1864 140 3 40 chr9 40011585 40011730 -77850897 - AluSx SINE Alu -162 150 1 31 18 0 53 chr9 40012172 40012229 -77850398 + AT_rich Low_complexity Low_complexity 1 54 0 535 288 104 69 chr9 40012240 40012504 -77850123 + L1 LINE L1 4110 4396 -1750 866 146 0 0 chr9 40012504 40012634 -77849993 + FLAM_C SINE Alu 1 130 -3 535 288 104 69 chr9 40012634 40012803 -77849824 + L1 LINE L1 4396 4558 -1588 2062 119 0 0 chr9 40013052 40013345 -77849282 - AluSq SINE Alu -20 293 1 1782 149 7 0 chr9 40013765 40014040 -77848587 + AluSx SINE Alu 21 297 -15 1618 183 7 3 chr9 40014361 40014651 -77847976 + AluJo SINE Alu 4 294 -18 3462 94 25 0 chr9 40014735 40015223 -77847404 + L1PA13 LINE L1 5646 6145 -18 2044 101 10 10 chr9 40015234 40015541 -77847086 + AluSq SINE Alu 1 307 -6 1831 145 7 23 chr9 40016681 40016819 -77845808 + AluJb SINE Alu 1 140 -172 2118 124 0 0 chr9 40016819 40017118 -77845509 + AluSx SINE Alu 1 299 -13 1831 145 7 23 chr9 40017118 40017289 -77845338 + AluJb SINE Alu 140 305 -7 5445 41 14 1 chr9 40017993 40018655 -77843972 - SVA Other Other -3 1383 714 742 160 56 7 chr9 40019021 40019148 -77843479 - L1M3 LINE L1 -427 5744 5608 1352 201 35 7 chr9 40019148 40019437 -77843190 - AluJo SINE Alu -15 297 1 742 160 56 7 chr9 40019437 40019453 -77843174 - L1M3 LINE L1 -563 5608 5594 1615 181 3 3 chr9 40019468 40019756 -77842871 - AluJo SINE Alu -24 288 1 329 234 18 81 chr9 40019785 40019896 -77842731 - L1MC4 LINE L1 -1330 6712 6609 249 298 205 44 chr9 40020170 40020375 -77842252 + MIR SINE MIR 5 242 -20 199 293 0 40 chr9 40020527 40020602 -77842025 + L2 LINE L2 3242 3313 0 1089 191 157 45 chr9 40020706 40021082 -77841545 - Charlie1 DNA MER1_type -1 2760 2343 329 275 14 0 chr9 40021081 40021150 -77841477 - Charlie1 DNA MER1_type -2691 70 1 * 2361 64 0 7 chr9 40022526 40022824 -77839803 - AluSg SINE Alu -14 296 1 1164 39 0 59 chr9 40022824 40022977 -77839650 - AluY SINE Alu -167 144 1 401 103 59 0 chr9 40024175 40024243 -77838384 - MER4B-int LTR ERV1 -6686 72 1 868 40 0 0 chr9 40024265 40024365 -77838262 + AluY SINE Alu 96 195 -116 234 0 0 0 chr9 40024490 40024516 -77838111 + (T)n Simple_repeat Simple_repeat 1 26 0 26 30 0 0 chr9 40026431 40026464 -77836163 + AT_rich Low_complexity Low_complexity 1 33 0 2283 82 0 3 chr9 40026714 40027008 -77835619 + AluSx SINE Alu 1 293 -19 1628 150 68 0 chr9 40028205 40028485 -77834142 - AluJb SINE Alu -13 299 1 21 0 0 0 chr9 40028640 40028661 -77833966 + AT_rich Low_complexity Low_complexity 1 21 0 2123 76 7 0 chr9 40029081 40029385 -77833242 - AluSp SINE Alu 0 311 6 357 277 110 46 chr9 40029496 40029534 -77833093 + L2 LINE L2 2652 2686 -586 1788 112 49 7 chr9 40029534 40029821 -77832806 - AluSx SINE Alu -13 299 1 357 277 110 46 chr9 40029821 40030183 -77832444 + L2 LINE L2 2686 3092 -180 542 124 216 0 chr9 40030941 40031038 -77831589 + FLAM_C SINE Alu 1 118 -25 1846 145 0 0 chr9 40031825 40032133 -77830494 - AluJb SINE Alu 0 308 1 819 142 0 57 chr9 40032160 40032301 -77830326 + FLAM_C SINE Alu 1 133 0 1620 165 36 93 chr9 40032468 40032520 -77830107 - MLT1A2 LTR MaLR 0 374 321 2261 126 21 9 chr9 40032520 40032853 -77829774 + MER1B DNA MER1_type 1 337 0 1620 165 36 93 chr9 40032853 40033164 -77829463 - MLT1A2 LTR MaLR -53 321 32 833 136 8 8 chr9 40033982 40034114 -77828513 - FLAM_C SINE Alu -11 132 1 188 260 167 67 chr9 40034512 40034662 -77827965 + L2 LINE L2 3047 3211 -61 631 239 91 37 chr9 40034791 40034854 -77827773 + L1ME2 LINE L1 5894 5952 -212 189 0 0 0 chr9 40034854 40034875 -77827752 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 631 239 91 37 chr9 40034875 40035054 -77827573 + L1ME2 LINE L1 5952 6149 -15 2157 106 0 3 chr9 40035159 40035461 -77827166 + AluSx SINE Alu 1 301 -11 2288 84 0 3 chr9 40035868 40036177 -77826450 + AluY SINE Alu 2 309 -2 1817 114 66 4 chr9 40036553 40036826 -77825801 - AluSx SINE Alu -22 290 1 2110 121 3 0 chr9 40037098 40037405 -77825222 - AluSq SINE Alu -5 308 1 907 152 62 17 chr9 40037621 40037799 -77824828 + MER5A DNA MER1_type 3 188 -1 1493 140 49 62 chr9 40038532 40038840 -77823787 - AluJb SINE Alu -7 305 2 619 227 125 46 chr9 40039133 40039349 -77823278 + MIR SINE MIR 4 236 -26 573 190 45 95 chr9 40039349 40039528 -77823099 + MLT1D LTR MaLR 5 174 -331 819 122 8 15 chr9 40039535 40039666 -77822961 + AluJo SINE Alu 7 136 -176 1515 148 61 0 chr9 40039690 40039940 -77822687 + MLT1D LTR MaLR 252 505 0 23 0 0 0 chr9 40039990 40040013 -77822614 + AT_rich Low_complexity Low_complexity 1 23 0 376 161 99 62 chr9 40040613 40040774 -77821853 + Charlie7 DNA MER1_type 2433 2599 -13 726 189 26 99 chr9 40041378 40041499 -77821128 - MER45A DNA AcHobo -1404 177 73 1958 152 7 10 chr9 40041499 40041808 -77820819 - AluJo SINE Alu -4 308 1 726 189 26 99 chr9 40041808 40041877 -77820750 - MER45A DNA AcHobo -1508 73 1 209 299 45 30 chr9 40041927 40041994 -77820633 + L2 LINE L2 3200 3267 -5 650 203 49 0 chr9 40042190 40042313 -77820314 - L2 LINE L2 -1 3312 3184 21 36 0 0 chr9 40042558 40042586 -77820041 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr9 40043377 40043398 -77819229 + AT_rich Low_complexity Low_complexity 1 21 0 540 248 100 61 chr9 40044837 40045067 -77817560 + MIR SINE MIR 8 246 -16 2119 112 0 7 chr9 40045242 40045557 -77817070 - AluSx SINE Alu 0 315 3 2041 138 0 0 chr9 40045561 40045851 -77816776 - AluJb SINE Alu -18 294 5 501 258 126 47 chr9 40046257 40046447 -77816180 + MIR3 SINE MIR 3 207 -1 2487 76 0 0 chr9 40046509 40046813 -77815814 - AluSg SINE Alu -6 304 1 395 297 50 22 chr9 40046845 40047027 -77815600 + MER5A DNA MER1_type 3 189 0 248 273 0 0 chr9 40048005 40048060 -77814567 + GA-rich Low_complexity Low_complexity 4 58 0 243 0 0 0 chr9 40049339 40049366 -77813261 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 186 222 0 22 chr9 40052178 40052223 -77810404 - MIR SINE MIR -51 211 168 670 141 0 62 chr9 40053062 40053190 -77809437 - FLAM_A SINE Alu -9 124 5 1890 172 0 7 chr9 40053682 40053990 -77808637 - AluJb SINE Alu -6 306 1 857 136 0 36 chr9 40053991 40054131 -77808496 - AluJo SINE Alu -177 135 1 1221 181 85 11 chr9 40055172 40055443 -77807184 + L1MA6 LINE L1 6005 6295 -5 1744 148 7 55 chr9 40055451 40055761 -77806866 + AluJo SINE Alu 1 295 -17 785 159 53 14 chr9 40055777 40055985 -77806642 + Charlie2 DNA MER1_type 2248 2463 -399 447 157 4 2 chr9 40055990 40056213 -77806414 + AluJ SINE Alu 1 261 -51 1271 98 0 0 chr9 40056426 40056589 -77806038 - AluSp SINE Alu -11 302 140 275 93 0 47 chr9 40056593 40056636 -77805991 - AluSp SINE Alu -134 169 129 956 83 0 0 chr9 40056690 40056811 -77805816 - AluSq SINE Alu -14 299 179 22 0 0 0 chr9 40056811 40056833 -77805794 + AT_rich Low_complexity Low_complexity 1 22 0 734 113 119 62 chr9 40056833 40056892 -77805735 - L1MA8 LINE L1 -38 6253 6199 324 0 0 0 chr9 40056892 40056928 -77805699 + (TA)n Simple_repeat Simple_repeat 1 36 0 734 113 119 62 chr9 40056928 40057045 -77805582 - L1MA8 LINE L1 -92 6199 6067 1320 106 6 6 chr9 40057050 40057230 -77805397 - AluSq SINE Alu -133 180 1 1830 177 0 3 chr9 40057261 40057544 -77805083 - AluJo SINE Alu -30 282 1 379 286 56 45 chr9 40057567 40058041 -77804586 - L1MEd LINE L1 -4779 1531 1009 2152 98 25 0 chr9 40058041 40058344 -77804283 - AluSx SINE Alu 0 312 3 1340 189 16 4 chr9 40058379 40058627 -77804000 + AluJo SINE Alu 1 251 -61 1983 126 0 0 chr9 40058627 40058897 -77803730 - AluSx SINE Alu -42 270 1 3764 111 48 44 chr9 40058917 40058976 -77803651 - L1MA8 LINE L1 -38 6253 6196 504 0 0 0 chr9 40058976 40059032 -77803595 + (TA)n Simple_repeat Simple_repeat 1 56 0 3764 111 48 44 chr9 40059032 40059658 -77802969 - L1MA8 LINE L1 -95 6196 5565 475 250 95 65 chr9 40059658 40059736 -77802891 - L1MDa LINE L1 -1842 4698 4624 696 199 179 65 chr9 40059736 40059788 -77802839 + MER58A DNA MER1_type 1 46 -2374 1638 180 0 39 chr9 40059788 40059958 -77802669 - AluJo SINE Alu -18 294 140 2163 107 10 7 chr9 40059958 40060258 -77802369 - AluSg SINE Alu -9 301 1 1638 180 0 39 chr9 40060258 40060393 -77802234 - AluJo SINE Alu -172 140 1 696 199 179 65 chr9 40060393 40060541 -77802086 + MER58A DNA MER1_type 46 224 0 475 250 95 65 chr9 40060541 40060798 -77801829 - L1MDa LINE L1 -1916 4624 4353 3401 172 16 33 chr9 40060807 40060867 -77801760 - L1MB7 LINE L1 -13 6171 6111 2356 86 0 3 chr9 40060867 40061169 -77801458 - AluSx SINE Alu -11 301 1 3401 172 16 33 chr9 40061169 40061804 -77800823 - L1MB7 LINE L1 -73 6111 5488 3436 214 91 51 chr9 40061806 40062578 -77800049 - L1MB7 LINE L1 -1596 4550 3810 2262 123 3 0 chr9 40062578 40062887 -77799740 - AluSq SINE Alu -3 310 1 3436 214 91 51 chr9 40062887 40063103 -77799524 - L1MB7 LINE L1 -2336 3810 3604 1715 110 4 0 chr9 40063103 40063330 -77799297 + AluSq SINE Alu 1 228 -85 3436 214 91 51 chr9 40063330 40063566 -77799061 - L1MB7 LINE L1 -2542 3604 3277 526 272 122 36 chr9 40063554 40064016 -77798611 - L1MDa LINE L1 -2190 4350 3858 * 607 277 114 15 chr9 40064320 40064714 -77797913 - L1MDa LINE L1 -2679 3861 3429 799 296 69 48 chr9 40064717 40065032 -77797595 - L1MDa LINE L1 -3236 3304 2997 1483 76 119 148 chr9 40065032 40065204 -77797423 - AluSx SINE Alu -18 294 133 2115 115 0 0 chr9 40065204 40065490 -77797137 - AluSx SINE Alu -26 286 1 1483 76 119 148 chr9 40065490 40065620 -77797007 - AluSx SINE Alu -179 133 1 799 296 69 48 chr9 40065620 40066101 -77796526 - L1MDa LINE L1 -3543 2997 2492 1906 156 7 0 chr9 40066543 40066844 -77795783 + AluJo SINE Alu 1 303 -9 512 258 33 52 chr9 40066981 40067195 -77795432 - MER20B DNA MER1_type -4 215 2 193 358 12 12 chr9 40068652 40068733 -77793894 + L2 LINE L2 2928 3008 -264 5525 104 67 13 chr9 40068742 40069647 -77792980 - Tigger3b DNA MER2_type -3 1228 275 599 153 41 0 chr9 40069646 40069744 -77792883 - Tigger3b DNA MER2_type -1129 102 1 * 378 312 83 87 chr9 40069747 40070000 -77792627 + L2 LINE L2 3020 3271 -1 21 0 0 0 chr9 40070290 40070311 -77792316 + AT_rich Low_complexity Low_complexity 1 21 0 804 171 0 0 chr9 40070319 40070436 -77792191 + AluJb SINE Alu 1 117 -195 2292 77 3 26 chr9 40070499 40070810 -77791817 + AluSg1 SINE Alu 1 304 -5 241 274 32 0 chr9 40070857 40070952 -77791675 - L1ME LINE L1 -238 5883 5786 1631 117 4 4 chr9 40071020 40071250 -77791377 - AluSq SINE Alu -83 230 1 520 299 43 20 chr9 40071271 40071525 -77791102 - L1ME LINE L1 -365 5756 5497 1118 135 12 6 chr9 40071822 40071985 -77790642 - AluJb SINE Alu -16 296 133 2402 88 0 0 chr9 40072373 40072680 -77789947 - AluSc SINE Alu -2 307 1 203 317 33 0 chr9 40072725 40072785 -77789842 + L2 LINE L2 3211 3272 0 2074 107 0 44 chr9 40074099 40074271 -77788356 - AluSq SINE Alu -10 303 150 2230 93 7 0 chr9 40074271 40074562 -77788065 - AluSx SINE Alu -19 293 1 2074 107 0 44 chr9 40074562 40074706 -77787921 - AluSq SINE Alu -163 150 1 1908 138 10 3 chr9 40074775 40075064 -77787563 + AluSx SINE Alu 3 293 -19 1725 152 7 0 chr9 40075621 40075890 -77786737 + AluSx SINE Alu 1 271 -41 314 185 0 0 chr9 40076426 40076480 -77786147 + Tigger5 DNA MER2_type 1 54 -2269 503 163 12 0 chr9 40076489 40076575 -77786052 + Tigger5 DNA MER2_type 2237 2323 0 1354 147 114 18 chr9 40076715 40076987 -77785640 + AluJo SINE Alu 15 312 0 2320 97 0 0 chr9 40077385 40077683 -77784944 - AluSq SINE Alu -15 298 1 22 0 0 0 chr9 40077694 40077716 -77784911 + AT_rich Low_complexity Low_complexity 1 22 0 598 55 0 0 chr9 40077719 40077792 -77784835 - AluSq SINE Alu -107 206 134 1305 71 6 6 chr9 40077891 40078060 -77784567 - AluSg/x SINE Alu -10 299 131 503 315 85 10 chr9 40078367 40078567 -77784060 + MIR SINE MIR 48 262 0 2302 80 21 0 chr9 40078629 40078918 -77783709 - AluSx SINE Alu -17 295 1 337 258 118 0 chr9 40079448 40079541 -77783086 - L2 LINE L2 -15 3298 3195 499 302 134 38 chr9 40079546 40079827 -77782800 - L1ME3A LINE L1 -230 5923 5670 1862 169 13 7 chr9 40079827 40080134 -77782493 - AluJo SINE Alu -3 309 1 499 302 134 38 chr9 40080134 40080359 -77782268 - L1ME3A LINE L1 -483 5670 5367 186 43 0 0 chr9 40080383 40080406 -77782221 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 2192 79 43 0 chr9 40080411 40080689 -77781938 - AluSp SINE Alu -23 290 1 468 298 51 21 chr9 40080743 40081075 -77781552 - L1ME3A LINE L1 -878 5251 4910 278 331 65 0 chr9 40081240 40081364 -77781263 - L1ME3A LINE L1 -1482 4647 4516 589 190 99 0 chr9 40081397 40081518 -77781109 - FLAM_A SINE Alu 0 133 1 678 301 67 79 chr9 40081519 40081671 -77780956 - L1ME3A LINE L1 -5501 618 466 1417 150 113 34 chr9 40081671 40081937 -77780690 + AluJo SINE Alu 1 287 -25 678 301 67 79 chr9 40081937 40082378 -77780249 - L1ME3A LINE L1 -5653 466 32 2407 82 3 3 chr9 40082733 40083038 -77779589 + AluSp SINE Alu 1 305 -8 459 293 79 16 chr9 40083208 40083707 -77778920 - L1ME LINE L1 -384 5855 5312 2181 92 0 51 chr9 40083807 40084122 -77778505 - AluSx SINE Alu -13 299 1 4822 89 34 0 chr9 40084124 40084797 -77777830 - L1PA13 LINE L1 -5 6158 5463 498 271 79 4 chr9 40084810 40085090 -77777537 - L1ME LINE L1 -3531 2684 2384 327 267 43 105 chr9 40085200 40085410 -77777217 - L1ME LINE L1 -4130 2266 2070 1332 126 55 71 chr9 40085590 40085680 -77776947 + MER33 DNA MER1_type 4 94 -2491 2257 123 0 0 chr9 40085680 40085982 -77776645 + AluSx SINE Alu 3 304 -8 1332 126 55 71 chr9 40085982 40086216 -77776411 + MER33 DNA MER1_type 94 323 -1 410 337 36 39 chr9 40086328 40086687 -77775940 - HAL1 LINE L1 -892 1615 1258 329 307 85 0 chr9 40086716 40086869 -77775758 - L1ME LINE L1 -5025 1180 1015 1039 155 6 6 chr9 40086870 40087038 -77775589 - AluJo SINE Alu -9 303 136 5734 151 24 8 chr9 40087057 40087416 -77775211 - L1PB1 LINE L1 -1 6150 5798 342 0 0 0 chr9 40087416 40087454 -77775173 + (TA)n Simple_repeat Simple_repeat 2 39 0 5734 151 24 8 chr9 40087454 40088397 -77774230 - L1PB1 LINE L1 -353 5798 4821 490 246 22 7 chr9 40088587 40088725 -77773902 + L1MC4a LINE L1 5790 5929 -1879 252 278 0 0 chr9 40088725 40088779 -77773848 + (TG)n Simple_repeat Simple_repeat 1 54 0 277 242 38 70 chr9 40088792 40088949 -77773678 + HAL1 LINE L1 2355 2506 -1 22 0 0 0 chr9 40088952 40088974 -77773653 + AT_rich Low_complexity Low_complexity 1 22 0 23 68 0 0 chr9 40089715 40089759 -77772868 + AT_rich Low_complexity Low_complexity 1 44 0 231 250 150 8 chr9 40089764 40089884 -77772743 - L1ME4a LINE L1 -62 6059 5923 588 282 103 43 chr9 40090691 40091110 -77771517 + L1MC4a LINE L1 5462 5905 -1903 2213 102 0 10 chr9 40091565 40091860 -77770767 + AluSg SINE Alu 1 292 -18 800 195 0 0 chr9 40092110 40092238 -77770389 - AluJo SINE Alu -172 130 3 1943 132 25 0 chr9 40092249 40092530 -77770097 - AluSx SINE Alu -18 294 7 395 294 57 76 chr9 40092624 40093096 -77769531 - L1M4 LINE L1 -1197 4949 4487 1820 264 199 43 chr9 40093111 40093167 -77769460 - L1MEd LINE L1 -1470 4745 4699 288 0 0 0 chr9 40093167 40093199 -77769428 + (CA)n Simple_repeat Simple_repeat 2 33 0 1820 264 199 43 chr9 40093199 40093259 -77769368 - L1MEd LINE L1 -1516 4699 4650 2300 99 0 3 chr9 40093259 40093552 -77769075 - AluSq SINE Alu -21 292 1 1820 264 199 43 chr9 40093552 40093766 -77768861 - L1MEd LINE L1 -1565 4650 4471 1713 196 14 0 chr9 40093766 40094051 -77768576 + AluJb SINE Alu 2 290 -22 1820 264 199 43 chr9 40094051 40094197 -77768430 - L1MEd LINE L1 -1744 4471 4349 2258 104 0 0 chr9 40094197 40094494 -77768133 - AluSq SINE Alu -14 299 3 1820 264 199 43 chr9 40094494 40095279 -77767348 - L1MEd LINE L1 -1866 4349 3688 876 158 8 0 chr9 40095279 40095406 -77767221 + FLAM_C SINE Alu 1 128 -5 2048 86 7 45 chr9 40095411 40095731 -77766896 + AluSg SINE Alu 1 309 0 423 0 0 0 chr9 40095731 40095778 -77766849 + (TA)n Simple_repeat Simple_repeat 2 48 0 1820 264 199 43 chr9 40095778 40096182 -77766445 - L1MEd LINE L1 -2529 3686 2806 506 280 133 29 chr9 40096184 40096463 -77766164 - L1MEd LINE L1 -3936 2460 2153 1396 216 18 0 chr9 40096463 40096746 -77765881 + AluJo SINE Alu 1 288 -24 34 24 0 0 chr9 40096933 40096974 -77765653 + AT_rich Low_complexity Low_complexity 1 41 0 1271 172 0 5 chr9 40097008 40097223 -77765404 + AluJb SINE Alu 85 298 -14 325 316 125 20 chr9 40097239 40097391 -77765236 - L1MEd LINE L1 -4584 1812 1645 259 270 54 0 chr9 40097391 40097502 -77765125 - L1MEd LINE L1 -4818 1399 1283 204 188 25 62 chr9 40097557 40097637 -77764990 + T-rich Low_complexity Low_complexity 2 78 0 470 249 131 60 chr9 40097652 40097706 -77764921 - L1MEd LINE L1 -4814 1401 1352 1595 149 28 0 chr9 40097706 40097954 -77764673 - AluJb SINE Alu -57 255 1 470 249 131 60 chr9 40097954 40098370 -77764257 - L1MEd LINE L1 -4863 1352 937 22 0 0 0 chr9 40098497 40098519 -77764108 + AT_rich Low_complexity Low_complexity 1 22 0 1626 202 0 7 chr9 40098519 40098811 -77763816 - AluJo SINE Alu -22 290 1 2322 101 0 13 chr9 40099097 40099414 -77763213 + AluSp SINE Alu 1 313 0 2412 81 0 3 chr9 40099692 40099990 -77762637 - AluSq SINE Alu -16 297 1 2168 92 7 7 chr9 40100009 40100302 -77762325 - AluSq SINE Alu -15 298 6 595 225 81 66 chr9 40100361 40100708 -77761919 - L1MEd LINE L1 -2911 3218 2867 1427 176 107 0 chr9 40100750 40101022 -77761605 - AluJo SINE Alu -11 301 1 445 101 78 3 chr9 40101072 40101407 -77761220 + (TA)n Simple_repeat Simple_repeat 1 360 0 1508 140 96 44 chr9 40101431 40101702 -77760925 - AluJb SINE Alu -22 290 6 2293 122 3 0 chr9 40101897 40102209 -77760418 + AluSq SINE Alu 1 313 0 30 59 0 0 chr9 40102223 40102274 -77760353 + AT_rich Low_complexity Low_complexity 1 51 0 822 171 16 0 chr9 40102535 40102658 -77759969 - FLAM_C SINE Alu -17 126 2 21 57 0 0 chr9 40102834 40102869 -77759758 + AT_rich Low_complexity Low_complexity 1 35 0 1916 137 16 13 chr9 40103745 40104051 -77758576 - AluJb SINE Alu 0 312 6 451 236 64 14 chr9 40104058 40104198 -77758429 - L1MEd LINE L1 -4100 2210 2064 2261 112 0 7 chr9 40104356 40104659 -77757968 - AluSx SINE Alu -11 301 1 577 270 110 38 chr9 40104735 40105059 -77757568 - L1MEd LINE L1 -4579 1731 1312 2329 105 3 0 chr9 40105059 40105364 -77757263 - AluSp SINE Alu -7 306 1 577 270 110 38 chr9 40105364 40105542 -77757085 - L1MEd LINE L1 -4998 1312 1148 333 318 11 17 chr9 40105606 40105782 -77756845 - L1MEd LINE L1 -4974 1145 971 333 260 55 16 chr9 40105810 40105937 -77756690 - MARNA DNA Mariner -53 533 402 390 280 117 59 chr9 40106199 40106438 -77756189 + L1MC/D LINE L1 5406 5658 -2150 219 309 89 68 chr9 40107491 40107682 -77754945 + L2 LINE L2 3119 3313 0 247 186 0 0 chr9 40108109 40108152 -77754475 - L2 LINE L2 -3 3310 3268 302 266 196 67 chr9 40108381 40108948 -77753679 - L1M2 LINE L1 -5523 1326 687 2280 64 24 7 chr9 40109430 40109725 -77752902 - AluSg1 SINE Alu -9 300 1 2494 149 59 74 chr9 40109904 40110415 -77752212 + MLT2B2 LTR ERVL 2 504 -11 432 180 0 0 chr9 40111052 40111113 -77751514 + AluJo SINE Alu 2 62 -250 645 158 42 0 chr9 40111113 40111208 -77751419 - AluJb SINE Alu -16 296 198 1272 174 0 64 chr9 40111209 40111473 -77751154 + AluJo SINE Alu 52 298 -14 2660 7 0 0 chr9 40111476 40111761 -77750866 + AluYb8 SINE Alu 34 318 0 779 210 157 26 chr9 40112054 40112283 -77750344 - MIR SINE MIR 0 262 4 254 235 0 0 chr9 40112588 40112639 -77749988 - Charlie8 DNA MER1_type -2225 192 142 2297 127 8 29 chr9 40112951 40113329 -77749298 + L1MB3 LINE L1 5814 6183 0 784 234 147 59 chr9 40113330 40113876 -77748751 + HAL1 LINE L1 1832 2425 -82 259 193 36 48 chr9 40113872 40113955 -77748672 - L1MB3 LINE L1 -125 6058 5977 * 285 250 73 32 chr9 40114783 40114907 -77747720 - L1MC4 LINE L1 0 8042 7914 2346 196 73 6 chr9 40114928 40114980 -77747647 - L1MB3 LINE L1 -2 6181 6130 4463 210 59 115 chr9 40114980 40115558 -77747069 - L1ME2 LINE L1 -45 6119 5510 732 178 42 0 chr9 40115558 40115676 -77746951 - FLAM_C SINE Alu -6 127 5 4463 210 59 115 chr9 40115676 40116797 -77745830 - L1ME2 LINE L1 -654 5510 4327 455 223 21 0 chr9 40116797 40116891 -77745736 - AluJo SINE Alu -177 135 40 4463 210 59 115 chr9 40116891 40117013 -77745614 - L1ME2 LINE L1 -1837 4327 4200 842 144 7 50 chr9 40117013 40117152 -77745475 + FLAM_C SINE Alu 1 133 0 4463 210 59 115 chr9 40117152 40117332 -77745295 - L1ME2 LINE L1 -1964 4200 4011 192 111 0 0 chr9 40117332 40117368 -77745259 + (TG)n Simple_repeat Simple_repeat 1 36 0 4463 210 59 115 chr9 40117368 40118079 -77744548 - L1ME2 LINE L1 -2153 4011 3518 2500 114 46 8 chr9 40118124 40118475 -77744152 + THE1B LTR MaLR 1 364 0 1124 224 106 44 chr9 40118491 40119182 -77743445 + LTR41 LTR ERVL 1 767 -6 497 305 62 20 chr9 40119704 40119983 -77742644 + LTR40c LTR ERVL 148 480 -39 2312 101 0 0 chr9 40120361 40120658 -77741969 + AluSx SINE Alu 1 297 -15 2173 115 0 0 chr9 40121805 40122092 -77740535 + AluSx SINE Alu 1 287 -25 192 97 0 0 chr9 40122095 40122126 -77740501 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 2210 106 0 0 chr9 40123194 40123486 -77739141 + AluSx SINE Alu 1 292 -20 2317 88 7 0 chr9 40124142 40124438 -77738189 - AluSx SINE Alu -14 298 1 267 309 36 18 chr9 40125258 40125368 -77737259 + L3 LINE CR1 1065 1176 -401 441 279 130 10 chr9 40125406 40125614 -77737013 + L3 LINE CR1 1301 1533 -44 27 49 0 0 chr9 40126115 40126156 -77736471 + AT_rich Low_complexity Low_complexity 1 41 0 304 328 147 59 chr9 40126779 40127120 -77735507 + L2 LINE L2 2902 3272 0 816 179 136 11 chr9 40127289 40127473 -77735154 + MER3 DNA MER1_type 2 208 -1 262 286 71 0 chr9 40129483 40129581 -77733046 - L1ME4a LINE L1 -4 6117 6013 199 206 363 0 chr9 40129613 40129715 -77732912 - MIR SINE MIR -31 231 93 2494 124 104 2 chr9 40130186 40130589 -77732038 - L1PB3 LINE L1 -2 6152 5709 2039 106 50 3 chr9 40131337 40131620 -77731007 - AluSg SINE Alu -10 300 5 186 189 27 0 chr9 40131643 40131680 -77730947 - L2 LINE L2 -16 3256 3219 2173 103 7 0 chr9 40131830 40132120 -77730507 - AluSx SINE Alu -6 306 15 292 331 153 31 chr9 40132338 40132625 -77730002 - L2 LINE L2 -5 3267 2946 2478 86 0 0 chr9 40132634 40132947 -77729680 - AluSp SINE Alu 0 313 1 2054 124 10 13 chr9 40132947 40133245 -77729382 - AluSx SINE Alu -14 298 1 24 53 0 0 chr9 40133580 40133618 -77729009 + AT_rich Low_complexity Low_complexity 1 38 0 1559 156 45 24 chr9 40134034 40134322 -77728305 + AluJo SINE Alu 1 294 -18 992 314 64 36 chr9 40134570 40135102 -77727525 - L3 LINE CR1 -23 1554 1008 263 242 22 33 chr9 40135158 40135249 -77727378 - MARNA DNA Mariner -478 108 19 1369 167 93 0 chr9 40135557 40135814 -77726813 + AluJb SINE Alu 1 281 -31 722 158 0 39 chr9 40135878 40136005 -77726622 - FRAM SINE Alu -5 171 50 2112 118 0 0 chr9 40136025 40136305 -77726322 - AluSc SINE Alu -29 280 1 626 283 79 22 chr9 40136310 40136438 -77726189 - L1MC4 LINE L1 0 8042 7923 1647 178 3 43 chr9 40136438 40136741 -77725886 + AluJo SINE Alu 1 291 -21 626 283 79 22 chr9 40136741 40137019 -77725608 - L1MC4 LINE L1 -119 7923 7613 817 139 0 8 chr9 40137033 40137155 -77725472 - FLAM_C SINE Alu -20 123 3 393 173 49 0 chr9 40137196 40137277 -77725350 - L1MC4 LINE L1 -487 7555 7471 672 183 87 0 chr9 40137281 40137396 -77725231 + FLAM_C SINE Alu 2 126 -17 1391 140 123 74 chr9 40137407 40137545 -77725082 + AluJo SINE Alu 1 131 -181 1866 155 0 7 chr9 40137545 40137836 -77724791 + AluJo SINE Alu 1 289 -23 1391 140 123 74 chr9 40137836 40137982 -77724645 + AluJo SINE Alu 131 299 -13 573 219 215 15 chr9 40138007 40138267 -77724360 - L1MC4a LINE L1 -467 7341 7030 25 31 0 0 chr9 40138311 40138343 -77724284 + AT_rich Low_complexity Low_complexity 1 32 0 392 318 75 3 chr9 40139235 40139556 -77723071 + L1M4 LINE L1 3099 3442 -2704 1644 137 78 25 chr9 40139956 40140240 -77722387 + AluJb SINE Alu 1 299 -13 2087 151 0 0 chr9 40140521 40140833 -77721794 - AluJb SINE Alu 0 312 1 2074 142 10 0 chr9 40142323 40142625 -77720002 - AluJo SINE Alu -7 305 1 866 187 7 13 chr9 40142782 40142932 -77719695 + LTR53 LTR ERVL 1 149 -370 9020 32 20 2 chr9 40142932 40144754 -77717873 + L1PA4 LINE L1 4301 6149 -6 2039 201 24 0 chr9 40144756 40145125 -77717502 + LTR53 LTR ERVL 142 519 0 1990 130 0 59 chr9 40145135 40145286 -77717341 + AluSq SINE Alu 1 125 -188 1825 117 0 4 chr9 40145286 40145543 -77717084 + AluY SINE Alu 50 305 -6 1990 130 0 59 chr9 40145543 40145713 -77716914 + AluSq SINE Alu 125 303 -10 616 246 106 47 chr9 40146373 40146609 -77716018 + MIR SINE MIR 10 259 -3 2070 105 6 43 chr9 40146685 40147008 -77715619 - AluY SINE Alu 0 311 1 21 0 0 0 chr9 40147129 40147150 -77715477 + AT_rich Low_complexity Low_complexity 1 21 0 257 290 54 32 chr9 40147440 40147533 -77715094 - MIR SINE MIR -77 131 37 2101 127 10 0 chr9 40148150 40148442 -77714185 - AluSq SINE Alu -18 295 1 243 245 0 0 chr9 40148640 40148693 -77713934 - L2 LINE L2 -5 3308 3256 368 242 185 38 chr9 40149095 40149306 -77713321 - HAL1 LINE L1 -17 2490 2249 1048 179 40 0 chr9 40149336 40149509 -77713118 - AluJb SINE Alu -25 287 108 2107 106 14 0 chr9 40149533 40149815 -77712812 - AluSx SINE Alu -26 286 1 233 97 0 0 chr9 40150000 40150031 -77712596 - MER3 DNA MER1_type -160 49 19 2097 144 3 0 chr9 40150031 40150323 -77712304 - AluSx SINE Alu -19 293 1 2030 190 72 44 chr9 40150328 40150855 -77711772 - L1ME2 LINE L1 -131 6033 5492 529 327 86 4 chr9 40150937 40151215 -77711412 - L1MEc LINE L1 -6092 304 4 1958 156 0 0 chr9 40151441 40151724 -77710903 - AluJb SINE Alu -24 288 6 237 200 31 31 chr9 40151742 40151807 -77710820 - HAL1 LINE L1 -366 2141 2077 201 299 120 0 chr9 40151976 40152093 -77710534 + MIR SINE MIR 59 189 -73 1673 183 31 0 chr9 40152483 40152773 -77709854 + AluJo SINE Alu 1 299 -13 531 155 48 10 chr9 40152856 40152959 -77709668 - FLAM_C SINE Alu -26 117 11 244 196 0 0 chr9 40152968 40153019 -77709608 + L1MC4 LINE L1 6653 6703 -1339 318 223 0 43 chr9 40153037 40153131 -77709496 - L1MC4 LINE L1 -1339 6703 6614 1879 123 3 47 chr9 40153134 40153434 -77709193 - AluSx SINE Alu -25 287 1 184 245 19 19 chr9 40153719 40153772 -77708855 - L2 LINE L2 0 3272 3220 277 330 48 0 chr9 40154223 40154326 -77708301 + L2 LINE L2 3203 3310 -3 581 217 26 84 chr9 40154436 40154589 -77708038 - L1MB3 LINE L1 -28 6155 6018 2208 89 4 7 chr9 40154589 40154870 -77707757 - AluY SINE Alu -31 280 1 581 217 26 84 chr9 40154870 40154942 -77707685 - L1MB3 LINE L1 -165 6018 5943 425 190 0 13 chr9 40154946 40155025 -77707602 + MSTC LTR MaLR 1 78 -350 429 235 274 11 chr9 40155325 40155564 -77707063 + L2 LINE L2 2715 3011 -302 783 140 199 72 chr9 40156348 40156569 -77706058 + MER4D LTR ERV1 1 249 -623 5568 118 191 39 chr9 40156580 40157658 -77704969 - pTR5 LTR ERV1 0 2438 1197 564 268 134 10 chr9 40158161 40158370 -77704257 + MIR SINE MIR 28 262 0 186 167 0 0 chr9 40158441 40158477 -77704150 + CT-rich Low_complexity Low_complexity 3 38 0 1692 161 0 25 chr9 40158544 40158829 -77703798 + AluJb SINE Alu 21 298 -14 332 309 46 14 chr9 40159517 40159675 -77702952 - MIR SINE MIR -51 211 49 898 177 0 0 chr9 40159811 40159958 -77702669 + AluJb SINE Alu 61 207 -105 2443 207 82 13 chr9 40160255 40160792 -77701835 + MER119 DNA MER1_type 10 583 0 2228 89 4 0 chr9 40161339 40161748 -77700879 + AluSx SINE Alu 1 410 0 1229 184 93 17 chr9 40162051 40162341 -77700286 + L1ME1 LINE L1 5864 6333 -1 1784 230 81 82 chr9 40164613 40164762 -77697865 + HAL1 LINE L1 1506 1654 -853 1381 98 10 0 chr9 40164762 40164956 -77697671 + L1PA8A LINE L1 5936 6131 0 1784 230 81 82 chr9 40164956 40165731 -77696896 + HAL1 LINE L1 1654 2429 -78 409 124 191 22 chr9 40165779 40165824 -77696803 - MER63 DNA MER1_type -106 730 694 1909 174 0 6 chr9 40165824 40166135 -77696492 - AluJo SINE Alu -3 309 1 409 124 191 22 chr9 40166135 40166178 -77696449 - MER63 DNA MER1_type -142 694 1 346 271 17 25 chr9 40166252 40166370 -77696257 + L1ME4a LINE L1 5490 5606 -515 2076 117 3 26 chr9 40166371 40166680 -77695947 + AluSx SINE Alu 1 302 -10 337 156 21 0 chr9 40166680 40166776 -77695851 + (TA)n Simple_repeat Simple_repeat 1 98 0 24 0 0 0 chr9 40166780 40166804 -77695823 + AT_rich Low_complexity Low_complexity 1 24 0 1529 248 62 57 chr9 40166851 40167380 -77695247 + MLT1K LTR MaLR 57 588 0 337 305 121 5 chr9 40167404 40167594 -77695033 + L1ME4a LINE L1 5680 5891 -230 1980 169 0 3 chr9 40167807 40168114 -77694513 + AluJo SINE Alu 1 306 -6 1793 153 3 0 chr9 40169060 40169370 -77693257 + AluSx SINE Alu 30 312 0 281 238 113 25 chr9 40169430 40169510 -77693117 - HsTC2 DNA Tc2 -1811 87 1 1586 224 14 16 chr9 40169514 40169880 -77692747 + MLT1A1 LTR MaLR 1 365 0 878 192 68 0 chr9 40170400 40170498 -77692129 - MER5A DNA MER1_type 0 189 99 2407 91 0 0 chr9 40170498 40170795 -77691832 - AluSx SINE Alu -15 297 1 878 192 68 0 chr9 40170795 40170873 -77691754 - MER5A DNA MER1_type -90 99 1 228 211 18 18 chr9 40171229 40171286 -77691341 + CT-rich Low_complexity Low_complexity 4 60 0 218 260 0 27 chr9 40171712 40171785 -77690842 + L2 LINE L2 3235 3305 -8 1187 158 13 35 chr9 40172024 40172252 -77690375 + AluJo SINE Alu 87 309 -3 367 271 16 8 chr9 40172782 40172904 -77689723 - MER5A DNA MER1_type 0 189 67 1418 189 4 7 chr9 40172904 40173174 -77689453 - AluJo SINE Alu -10 302 34 1821 107 118 7 chr9 40173190 40173356 -77689271 - AluSg SINE Alu -9 301 155 2331 103 0 6 chr9 40173356 40173667 -77688960 - AluSx SINE Alu -3 309 1 1821 107 118 7 chr9 40173667 40173771 -77688856 - AluSg SINE Alu -155 155 1 248 319 0 0 chr9 40173774 40173846 -77688781 - MER5A DNA MER1_type -117 72 1 313 282 80 19 chr9 40175412 40175726 -77686901 + LTR33 LTR ERVL 92 513 -8 477 323 36 5 chr9 40179208 40179400 -77683227 - MIR SINE MIR -3 259 62 2145 130 3 0 chr9 40179934 40180235 -77682392 - AluSx SINE Alu -10 302 1 238 154 0 0 chr9 40180326 40180365 -77682262 - L2 LINE L2 -13 3259 3221 1022 202 157 45 chr9 40182089 40182465 -77680162 - Charlie1 DNA MER1_type -1 2760 2343 328 275 14 0 chr9 40182464 40182533 -77680094 - Charlie1 DNA MER1_type -2691 70 1 * 428 286 19 0 chr9 40234508 40234662 -77627965 + L1ME4a LINE L1 5749 5905 -216 205 219 0 0 chr9 40235460 40235501 -77627126 - MIR3 SINE MIR -6 202 162 217 132 0 0 chr9 40235717 40235755 -77626872 + (A)n Simple_repeat Simple_repeat 1 38 0 1258 129 0 0 chr9 40235771 40235934 -77626693 + AluSq SINE Alu 1 163 -150 5808 109 20 34 chr9 40235934 40236896 -77625731 - Tigger1 DNA MER2_type -80 2338 1391 8712 124 25 9 chr9 40236996 40238370 -77624257 - Tigger1 DNA MER2_type -1022 1396 2 2224 103 3 0 chr9 40238419 40238709 -77623918 + AluSq SINE Alu 1 291 -22 2114 123 0 35 chr9 40238719 40239029 -77623598 + AluSc SINE Alu 1 299 -10 602 277 150 5 chr9 40240349 40240569 -77622058 + MIR SINE MIR 2 253 -9 299 232 277 18 chr9 40240857 40240969 -77621658 - MIR3 SINE MIR -46 162 22 221 154 58 0 chr9 40241304 40241356 -77621271 + (CAGGG)n Simple_repeat Simple_repeat 4 58 0 197 371 48 24 chr9 40242106 40242230 -77620397 - L2 LINE L2 -5 3308 3182 248 281 94 31 chr9 40242278 40242406 -77620221 - MIR SINE MIR -19 243 108 227 316 71 0 chr9 40243660 40243758 -77618869 - MIR SINE MIR -3 259 155 232 121 0 0 chr9 40243812 40243845 -77618782 - MIR SINE MIR -213 49 17 235 245 135 80 chr9 40243932 40244095 -77618532 + MIR3 SINE MIR 16 187 -21 317 280 53 15 chr9 40244666 40244798 -77617829 + MIR3 SINE MIR 48 184 -24 1529 194 111 101 chr9 40245055 40245570 -77617057 + MLT2B1 LTR ERVL 1 520 0 402 304 132 71 chr9 40246986 40247392 -77615235 + L1MC4a LINE L1 5521 5800 -364 214 248 153 51 chr9 40247618 40247761 -77614866 - MIR3 SINE MIR -71 137 1 2424 80 0 0 chr9 40248539 40248852 -77613775 + AluSq SINE Alu 1 313 0 255 31 0 0 chr9 40249288 40249320 -77613307 + (CA)n Simple_repeat Simple_repeat 1 32 0 1179 61 0 0 chr9 40249845 40249992 -77612635 + L1PA5 LINE L1 6008 6154 0 251 308 58 8 chr9 40250586 40250706 -77611921 + MIR SINE MIR 20 145 -63 354 355 7 40 chr9 40250890 40251042 -77611585 + MIR SINE MIR 30 176 -86 189 331 176 0 chr9 40253746 40253882 -77608745 + L2 LINE L2 2898 3057 -215 1905 151 0 0 chr9 40254874 40255173 -77607454 - AluJb SINE Alu -13 299 1 181 337 0 11 chr9 40255316 40255405 -77607222 - L2 LINE L2 -27 3245 3158 206 242 0 65 chr9 40255574 40255636 -77606991 - L2 LINE L2 -546 2768 2711 227 288 209 20 chr9 40256184 40256337 -77606290 - MIR3 SINE MIR -20 188 7 346 271 8 59 chr9 40257305 40257423 -77605204 + MIR SINE MIR 81 192 -70 374 254 61 8 chr9 40258463 40258603 -77604024 + MIR SINE MIR 42 192 -62 184 188 0 0 chr9 40261994 40262026 -77600601 + MIR SINE MIR 119 150 -112 350 242 81 32 chr9 40263461 40263585 -77599042 + L2 LINE L2 3184 3313 0 192 205 0 0 chr9 40263781 40263820 -77598807 - L2 LINE L2 -91 3181 3143 702 253 143 22 chr9 40264060 40264333 -77598294 - L2 LINE L2 0 3313 3008 191 187 227 13 chr9 40265004 40265079 -77597548 + MIR SINE MIR 34 124 -84 446 249 68 0 chr9 40265851 40265988 -77596639 - MIR SINE MIR -63 145 35 556 240 71 19 chr9 40266570 40266724 -77595903 + MIR SINE MIR 100 261 -1 210 352 0 11 chr9 40267673 40267761 -77594866 - MIR3 SINE MIR -9 199 113 395 390 42 5 chr9 40267993 40268183 -77594444 - L3 LINE CR1 -1 1576 1380 252 283 0 0 chr9 40268202 40268255 -77594372 + MIR3 SINE MIR 108 160 -48 376 271 68 5 chr9 40268733 40268851 -77593776 + MIR SINE MIR 63 183 -63 185 273 114 34 chr9 40268932 40269020 -77593607 - MIR SINE MIR -60 148 54 1597 173 32 7 chr9 40269754 40270031 -77592596 + AluJb SINE Alu 6 289 -23 467 242 0 30 chr9 40270530 40270662 -77591965 + MIR3 SINE MIR 66 193 -15 468 315 75 58 chr9 40276021 40276502 -77586125 + L1MC4a LINE L1 5506 5996 -125 203 306 14 14 chr9 40276682 40276754 -77585873 - MER5A DNA MER1_type -1 188 117 * 253 210 48 0 chr9 40276750 40276812 -77585815 + MER5A DNA MER1_type 122 186 -3 621 124 0 0 chr9 40277087 40277184 -77585443 + L1PB1 LINE L1 6053 6149 -2 2270 97 0 7 chr9 40277478 40277788 -77584839 + AluSp SINE Alu 3 310 -3 2109 103 0 38 chr9 40277794 40278113 -77584514 + AluSx SINE Alu 1 307 -5 893 188 11 6 chr9 40278272 40278448 -77584179 + MSTB1 LTR MaLR 256 432 0 643 103 21 0 chr9 40278448 40278543 -77584084 + MLT1B LTR MaLR 294 390 0 188 277 62 0 chr9 40279619 40279684 -77582943 + L3 LINE CR1 1400 1468 -109 351 233 106 101 chr9 40280907 40281096 -77581531 - L3 LINE CR1 -76 1501 1312 244 317 250 0 chr9 40282385 40282505 -77580122 + MIR SINE MIR 96 245 -17 263 310 9 26 chr9 40283634 40283747 -77578880 - L2 LINE L2 -28 3244 3134 202 325 187 30 chr9 40283755 40283958 -77578669 + L2 LINE L2 3027 3261 -11 691 275 80 23 chr9 40284250 40284512 -77578115 - LTR16C LTR ERVL -2 489 213 376 301 55 33 chr9 40285440 40285623 -77577004 + L1ME4a LINE L1 5799 5985 -136 523 192 3 87 chr9 40286118 40286260 -77576367 + MIR SINE MIR 52 181 -63 1879 121 7 0 chr9 40286261 40286542 -77576085 - AluSx SINE Alu -4 308 26 791 217 96 24 chr9 40287441 40287607 -77575020 + MER45A DNA AcHobo 1 178 0 231 305 99 0 chr9 40287648 40287759 -77574868 + MIR SINE MIR 35 156 -52 2126 98 0 22 chr9 40287896 40288212 -77574415 + AluSc SINE Alu 1 309 0 285 292 173 22 chr9 40289041 40289226 -77573401 - MIR SINE MIR -29 233 21 570 147 202 0 chr9 40290283 40290392 -77572235 + AluJo SINE Alu 6 136 -176 470 316 64 5 chr9 40291292 40291479 -77571148 - L3 LINE CR1 -104 1473 1276 2217 109 0 0 chr9 40291542 40291854 -77570773 - AluSx SINE Alu 0 312 1 735 321 68 23 chr9 40291881 40292233 -77570394 + L3 LINE CR1 1140 1507 -70 295 232 0 14 chr9 40292545 40292614 -77570013 - MER58A DNA MER1_type -1 223 156 699 222 17 33 chr9 40292629 40292809 -77569818 - MER5B DNA MER1_type 0 178 2 284 244 51 26 chr9 40292870 40292948 -77569679 - MIR SINE MIR -87 121 42 541 292 35 12 chr9 40293648 40293819 -77568808 - MIR SINE MIR -66 196 22 498 211 156 0 chr9 40294348 40294476 -77568151 + MIR SINE MIR 19 166 -96 249 355 89 47 chr9 40295246 40295415 -77567212 + L2 LINE L2 3097 3272 0 * 353 209 62 54 chr9 40295413 40295542 -77567085 - MIR3 SINE MIR -66 142 13 211 236 34 56 chr9 40297055 40297144 -77565483 + MIR SINE MIR 16 102 -106 206 222 0 0 chr9 40297412 40297448 -77565179 + (CAGG)n Simple_repeat Simple_repeat 4 39 0 206 242 16 0 chr9 40298536 40298598 -77564029 - L2 LINE L2 -557 2757 2695 340 328 211 0 chr9 40298941 40299145 -77563482 + MIR SINE MIR 9 255 -7 199 303 131 30 chr9 40299816 40300014 -77562613 + L2 LINE L2 2844 3061 -211 2448 90 3 0 chr9 40300465 40300775 -77561852 + AluSp SINE Alu 1 311 -2 300 178 0 82 chr9 40301233 40301306 -77561321 - L2 LINE L2 0 3272 3206 2103 112 10 43 chr9 40302176 40302481 -77560146 + AluSx SINE Alu 1 295 -17 1851 94 0 4 chr9 40302803 40303038 -77559589 + AluSx SINE Alu 3 236 -76 589 227 130 0 chr9 40303097 40303251 -77559376 + MER58B DNA MER1_type 168 341 0 454 248 40 8 chr9 40303372 40303497 -77559130 - MARNA DNA Mariner -196 390 262 238 233 17 0 chr9 40303820 40303880 -77558747 - MIR SINE MIR -67 141 81 351 303 120 7 chr9 40304038 40304180 -77558447 + MIR SINE MIR 87 244 -18 344 189 0 0 chr9 40305065 40305139 -77557488 - L1ME4a LINE L1 -92 6029 5956 1500 198 32 0 chr9 40305218 40305501 -77557126 + AluJo SINE Alu 1 292 -20 1731 152 52 7 chr9 40305881 40306151 -77556476 - AluJb SINE Alu -15 297 16 2175 112 10 26 chr9 40306188 40306501 -77556126 + AluSx SINE Alu 5 312 0 247 143 41 0 chr9 40306504 40306553 -77556074 - MIR SINE MIR -73 135 85 2286 100 31 0 chr9 40306657 40306948 -77555679 - AluSq SINE Alu -13 300 1 2320 86 3 10 chr9 40308018 40308322 -77554305 + AluSc SINE Alu 1 302 -7 196 322 9 52 chr9 40309700 40309815 -77552812 + L2 LINE L2 2950 3059 -213 490 223 26 104 chr9 40309993 40310102 -77552525 + MIR SINE MIR 42 131 -131 2299 103 0 0 chr9 40310102 40310394 -77552233 - AluY SINE Alu -19 292 1 490 223 26 104 chr9 40310394 40310477 -77552150 + MIR SINE MIR 131 219 -43 313 276 0 0 chr9 40310648 40310746 -77551881 - MIR SINE MIR 0 262 165 217 354 0 63 chr9 40310898 40311025 -77551602 - MIR SINE MIR -73 135 25 259 336 28 28 chr9 40311530 40311637 -77550990 + L3 LINE CR1 1256 1362 -215 592 253 49 19 chr9 40311830 40311992 -77550635 - MER5B DNA MER1_type -1 177 11 450 303 133 57 chr9 40313062 40313196 -77549431 + L1ME LINE L1 4931 5053 -1093 1952 145 3 3 chr9 40313196 40313485 -77549142 - AluSx SINE Alu -19 293 5 450 303 133 57 chr9 40313485 40313772 -77548855 + L1ME LINE L1 5053 5384 -762 372 283 107 11 chr9 40313852 40314039 -77548588 + L1ME LINE L1 5544 5748 -373 551 292 70 46 chr9 40314040 40314321 -77548306 + HAL1b LINE L1 1188 1330 -18 206 267 44 67 chr9 40314686 40314776 -77547851 + L3 LINE CR1 1364 1451 -126 688 272 166 33 chr9 40315203 40315966 -77546661 + L2 LINE L2 2405 3291 -22 207 0 0 0 chr9 40315974 40315997 -77546630 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 255 287 86 12 chr9 40316648 40316785 -77545842 + MIR SINE MIR 52 195 -57 617 188 65 178 chr9 40316949 40317026 -77545601 + MIR SINE MIR 3 87 -175 1953 115 15 0 chr9 40317026 40317307 -77545320 - AluSx SINE Alu 0 306 22 240 67 0 0 chr9 40317307 40317337 -77545290 - AluSx SINE Alu -94 39 10 617 188 65 178 chr9 40317337 40317521 -77545106 + MIR SINE MIR 85 262 0 257 366 15 23 chr9 40317723 40317854 -77544773 + L2 LINE L2 3138 3267 -5 1886 139 73 3 chr9 40317909 40318197 -77544430 + AluJb SINE Alu 3 310 -2 506 257 29 7 chr9 40319044 40319180 -77543447 + MIR SINE MIR 11 149 -113 1374 215 119 50 chr9 40319180 40319584 -77543043 + MLT1H LTR MaLR 4 435 -114 830 200 69 0 chr9 40319626 40319786 -77542841 + MER58A DNA MER1_type 1 171 -53 228 118 0 0 chr9 40319800 40319834 -77542793 + MLT1H LTR MaLR 508 541 -8 462 273 60 60 chr9 40320239 40320539 -77542088 + L2 LINE L2 2862 3161 -111 22 0 0 0 chr9 40320653 40320675 -77541952 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 40320836 40320857 -77541770 + AT_rich Low_complexity Low_complexity 1 21 0 227 333 0 0 chr9 40321300 40321372 -77541255 + (CA)n Simple_repeat Simple_repeat 2 73 0 1416 153 113 4 chr9 40321709 40321957 -77540670 + AluJo SINE Alu 1 275 -37 485 229 97 23 chr9 40322261 40322436 -77540191 + MER5A DNA MER1_type 2 189 0 204 97 0 0 chr9 40324257 40324288 -77538339 + (CAGGG)n Simple_repeat Simple_repeat 3 33 0 320 253 11 32 chr9 40324327 40324422 -77538205 + MIR3 SINE MIR 62 154 -54 28 71 0 0 chr9 40324879 40324935 -77537692 + GC_rich Low_complexity Low_complexity 1 56 0 34 73 0 28 chr9 40325519 40325628 -77536999 + GC_rich Low_complexity Low_complexity 1 106 0 27 62 0 0 chr9 40326024 40326072 -77536555 + GC_rich Low_complexity Low_complexity 1 48 0 282 190 29 58 chr9 40326133 40326270 -77536357 + (CCCCG)n Simple_repeat Simple_repeat 2 134 0 2399 68 0 10 chr9 40326925 40327217 -77535410 + AluSg1 SINE Alu 1 289 -20 271 57 0 0 chr9 40327224 40327259 -77535368 - MIR SINE MIR -62 146 112 195 303 67 22 chr9 40327865 40327954 -77534673 - MIR3 SINE MIR -106 102 10 288 0 0 0 chr9 40328178 40328210 -77534417 + (TG)n Simple_repeat Simple_repeat 1 32 0 * 342 0 0 0 chr9 40328209 40328247 -77534380 + (GA)n Simple_repeat Simple_repeat 1 38 0 293 241 193 35 chr9 40329151 40329296 -77533331 - MIR3 SINE MIR -2 206 39 2145 105 33 13 chr9 40329588 40329893 -77532734 - AluY SINE Alu 0 311 1 2316 89 7 0 chr9 40329893 40330185 -77532442 - AluSp SINE Alu -19 294 1 255 333 50 64 chr9 40330413 40330868 -77531759 - L2 LINE L2 -227 3045 2594 207 259 37 0 chr9 40330871 40330925 -77531702 + L2 LINE L2 3217 3272 0 277 337 0 0 chr9 40331079 40331174 -77531453 - L2 LINE L2 -1017 2297 2203 * 1172 259 117 21 chr9 40331173 40331892 -77530735 + L2 LINE L2 2444 3313 0 551 202 8 8 chr9 40332014 40332143 -77530484 - L1MA9 LINE L1 -36 6276 6148 9078 114 61 56 chr9 40332143 40333967 -77528660 + pTR5 LTR ERV1 71 2429 -9 3928 168 25 64 chr9 40333967 40334331 -77528296 - L1MA9 LINE L1 -161 6151 5774 1875 153 0 38 chr9 40334331 40334644 -77527983 - AluJb SINE Alu -10 302 2 784 104 0 0 chr9 40334647 40334762 -77527865 - L1MA3 LINE L1 0 6305 6191 3928 168 25 64 chr9 40334762 40335224 -77527403 - L1MA9 LINE L1 -540 5772 5294 2129 131 6 13 chr9 40335224 40335537 -77527090 - AluSx SINE Alu -1 311 1 3928 168 25 64 chr9 40335537 40335580 -77527047 - L1MA9 LINE L1 -1018 5294 5251 2346 79 10 3 chr9 40335580 40335872 -77526755 + AluSg1 SINE Alu 1 294 -15 3928 168 25 64 chr9 40335872 40336438 -77526189 - L1MA9 LINE L1 -1061 5251 4738 1659 163 30 40 chr9 40337343 40337478 -77525149 + AluJb SINE Alu 1 136 -176 1914 128 20 20 chr9 40337478 40337775 -77524852 + AluSx SINE Alu 15 311 -1 1659 163 30 40 chr9 40337775 40337939 -77524688 + AluJb SINE Alu 136 297 -15 256 247 49 12 chr9 40337957 40338038 -77524589 + MER53 DNA DNA 105 188 -1 288 257 119 0 chr9 40339096 40339205 -77523422 + AluSp SINE Alu 12 133 -170 1943 202 23 2 chr9 40339331 40339766 -77522861 + L1MB7 LINE L1 4419 4862 -1284 1340 121 109 59 chr9 40339772 40339918 -77522709 - L1MA8 LINE L1 -1 6290 6153 2198 123 0 22 chr9 40339918 40340236 -77522391 - AluSx SINE Alu -1 311 1 1340 121 109 59 chr9 40340236 40340427 -77522200 - L1MA8 LINE L1 -138 6153 5936 24 32 0 0 chr9 40340428 40340459 -77522168 + AT_rich Low_complexity Low_complexity 1 31 0 641 174 0 0 chr9 40340459 40340568 -77522059 - FLAM_C SINE Alu -27 116 8 1441 112 9 0 chr9 40340575 40340799 -77521828 - L1MA8 LINE L1 -343 5948 5723 * 3995 162 111 6 chr9 40340795 40341033 -77521594 + L1MB7 LINE L1 4954 5166 -1018 1739 162 10 14 chr9 40341033 40341323 -77521304 + AluJo SINE Alu 1 289 -23 3995 162 111 6 chr9 40341323 40342157 -77520470 + L1MB7 LINE L1 5166 6165 -19 482 253 39 101 chr9 40342351 40342608 -77520019 - L3 LINE CR1 -76 1501 1261 2260 125 7 0 chr9 40342889 40343192 -77519435 - AluSq SINE Alu -8 305 1 1836 145 22 0 chr9 40343540 40343841 -77518786 - AluJb SINE Alu 0 307 1 284 288 79 29 chr9 40343847 40343999 -77518628 + MIR SINE MIR 52 207 -55 208 313 152 18 chr9 40344304 40344416 -77518211 - L2 LINE L2 -1 3312 3186 2126 113 28 3 chr9 40344465 40344756 -77517871 + AluSx SINE Alu 1 298 -14 1048 231 15 23 chr9 40344918 40345178 -77517449 - MIR SINE MIR 0 262 5 2361 118 3 0 chr9 40345431 40345737 -77516890 + AluSx SINE Alu 1 307 -5 451 287 2 7 chr9 40346337 40346501 -77516126 + MIR SINE MIR 28 146 -62 229 265 15 15 chr9 40346747 40346815 -77515812 + MIR SINE MIR 24 91 -117 426 330 119 32 chr9 40347189 40347559 -77515068 - L2 LINE L2 -18 3254 2853 925 184 0 0 chr9 40347672 40347813 -77514814 - FRAM SINE Alu -22 154 14 246 250 143 7 chr9 40348254 40348394 -77514233 - L1ME4a LINE L1 -3 6118 5960 916 287 58 17 chr9 40348395 40348743 -77513884 - L1ME4a LINE L1 -193 5928 5567 374 272 59 41 chr9 40349300 40349410 -77513217 + L1ME LINE L1 5511 5627 -494 1585 178 16 13 chr9 40349410 40349714 -77512913 - AluJo SINE Alu -7 305 1 374 272 59 41 chr9 40349714 40349772 -77512855 + L1ME LINE L1 5627 5682 -439 312 167 0 19 chr9 40349773 40349827 -77512800 + MER66B LTR ERV1 294 346 -140 2057 132 6 3 chr9 40350025 40350336 -77512291 + AluSx SINE Alu 1 312 0 409 309 210 29 chr9 40350852 40351269 -77511358 - L2 LINE L2 0 3313 2778 1773 123 14 20 chr9 40351269 40351587 -77511040 + AluJo SINE Alu 1 312 0 409 309 210 29 chr9 40351587 40351660 -77510967 - L2 LINE L2 -535 2778 2719 396 40 0 0 chr9 40351668 40351718 -77510909 + (TG)n Simple_repeat Simple_repeat 1 50 0 25 0 0 0 chr9 40351765 40351790 -77510837 + AT_rich Low_complexity Low_complexity 1 25 0 341 265 37 49 chr9 40351802 40351832 -77510795 - L1PA16 LINE L1 -312 5854 5526 2075 120 0 3 chr9 40351832 40352131 -77510496 - AluSx SINE Alu -14 298 1 769 165 18 12 chr9 40352131 40352295 -77510332 - L1MB8 LINE L1 -352 5826 5662 753 188 13 7 chr9 40352289 40352443 -77510184 - L1M4 LINE L1 -6380 162 8 * 1798 119 70 3 chr9 40352463 40352749 -77509878 - AluSg SINE Alu -4 306 2 225 346 38 62 chr9 40352859 40353070 -77509557 + L2 LINE L2 2440 2645 -669 1278 187 50 40 chr9 40353253 40353414 -77509213 - L1MC2 LINE L1 -72 6272 6105 1541 176 3 33 chr9 40353414 40353715 -77508912 - AluJo SINE Alu -20 292 1 1278 187 50 40 chr9 40353715 40353853 -77508774 - L1MC2 LINE L1 -239 6105 5970 2111 123 0 0 chr9 40353887 40354187 -77508440 + AluSx SINE Alu 1 300 -12 248 236 0 0 chr9 40354239 40354294 -77508333 + CT-rich Low_complexity Low_complexity 2 56 0 392 272 96 7 chr9 40354295 40354431 -77508196 - MIR SINE MIR -83 179 32 2261 76 10 19 chr9 40354458 40354772 -77507855 - AluY SINE Alu 0 311 1 262 376 57 21 chr9 40354793 40354934 -77507693 + L2 LINE L2 3122 3267 -5 2243 102 0 0 chr9 40356728 40357032 -77505595 - AluSq SINE Alu -9 304 1 285 307 97 23 chr9 40357208 40357384 -77505243 - MER5A DNA MER1_type 0 189 1 246 253 13 38 chr9 40357819 40357898 -77504729 - MIR SINE MIR -166 96 20 1245 241 92 48 chr9 40357958 40358481 -77504146 - L1MC4 LINE L1 0 8042 7497 218 372 149 16 chr9 40358650 40358838 -77503789 + MIR SINE MIR 50 262 0 264 261 71 17 chr9 40359523 40359643 -77502984 - LTR33A LTR ERVL -344 179 35 655 291 20 72 chr9 40359700 40360047 -77502580 + MLT1K LTR MaLR 258 586 -2 2021 105 37 10 chr9 40360156 40360452 -77502175 + AluSx SINE Alu 1 304 -8 1185 172 0 9 chr9 40360522 40360743 -77501884 - AluJb SINE Alu -8 304 86 239 185 31 46 chr9 40361714 40361779 -77500848 + MIR SINE MIR 82 145 -63 568 161 198 31 chr9 40363602 40363764 -77498863 + MER53 DNA DNA 1 189 0 447 293 66 56 chr9 40363955 40364153 -77498474 + L2 LINE L2 3073 3272 0 851 206 178 0 chr9 40364163 40364377 -77498250 - MIR SINE MIR -6 256 5 180 217 0 0 chr9 40364382 40364428 -77498199 + (TGAA)n Simple_repeat Simple_repeat 3 48 0 3665 156 25 29 chr9 40365062 40365113 -77497514 - L1MB2 LINE L1 -7 6164 6114 1622 173 17 3 chr9 40365113 40365413 -77497214 - AluSx SINE Alu -8 304 1 3665 156 25 29 chr9 40365413 40366078 -77496549 - L1MB2 LINE L1 -57 6114 5451 313 264 58 13 chr9 40366409 40366564 -77496063 - L1ME4a LINE L1 0 6121 5960 1959 115 14 11 chr9 40367158 40367445 -77495182 - AluSx SINE Alu -24 288 1 209 322 0 0 chr9 40367593 40367652 -77494975 + MIR SINE MIR 204 262 0 2031 141 0 3 chr9 40367803 40368116 -77494511 - AluSx SINE Alu 0 312 1 393 22 0 0 chr9 40368177 40368223 -77494404 + (TG)n Simple_repeat Simple_repeat 2 47 0 2691 127 42 0 chr9 40368326 40368735 -77493892 + MSTB LTR MaLR 1 426 0 2806 0 0 0 chr9 40368976 40369284 -77493343 + AluYa8 SINE Alu 1 308 -2 419 294 20 46 chr9 40369869 40370022 -77492605 - MIR3 SINE MIR -10 198 50 321 261 127 35 chr9 40370413 40370555 -77492072 - L1ME4a LINE L1 -252 5869 5715 237 297 172 0 chr9 40370696 40370841 -77491786 - L1ME4a LINE L1 -2212 3934 3765 572 295 103 67 chr9 40370887 40371352 -77491275 - L1ME4a LINE L1 -2369 3777 3296 2164 117 0 0 chr9 40371655 40371963 -77490664 - AluSx SINE Alu -4 308 1 322 317 181 34 chr9 40373176 40373469 -77489158 - MLT1K LTR MaLR -122 466 131 333 131 12 24 chr9 40373496 40373511 -77489116 + GA-rich Low_complexity Low_complexity 1 15 -68 1610 187 10 3 chr9 40373511 40373633 -77488994 + AluJo SINE Alu 6 126 -186 207 0 0 0 chr9 40373633 40373656 -77488971 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1610 187 10 3 chr9 40373656 40373833 -77488794 + AluJo SINE Alu 126 307 -5 333 131 12 24 chr9 40373833 40373901 -77488726 + GA-rich Low_complexity Low_complexity 15 83 0 255 299 66 103 chr9 40374018 40374366 -77488261 - L2 LINE L2 -96 3176 2842 243 0 0 0 chr9 40374823 40374850 -77487777 + (TA)n Simple_repeat Simple_repeat 1 27 0 311 265 69 16 chr9 40374875 40375064 -77487563 - L1ME4a LINE L1 -3 6118 5920 4257 163 61 45 chr9 40375242 40375442 -77487185 - L1MB7 LINE L1 -16 6168 5973 2075 135 0 0 chr9 40375442 40375738 -77486889 - AluSx SINE Alu -16 296 1 4257 163 61 45 chr9 40375738 40376111 -77486516 - L1MB7 LINE L1 -211 5973 5608 2133 107 13 0 chr9 40376111 40376411 -77486216 + AluSg SINE Alu 1 304 -6 4257 163 61 45 chr9 40376411 40376566 -77486061 - L1MB7 LINE L1 -576 5608 5457 2059 125 13 19 chr9 40376566 40376879 -77485748 - AluJo SINE Alu -1 311 1 4257 163 61 45 chr9 40376879 40377170 -77485457 - L1MB7 LINE L1 -727 5457 5123 1975 120 40 0 chr9 40377219 40377519 -77485108 - AluSx SINE Alu 0 312 1 490 291 52 24 chr9 40377939 40378149 -77484478 + MIR SINE MIR 37 252 -10 231 346 95 34 chr9 40378637 40378816 -77483811 + MIR3 SINE MIR 1 190 -18 285 303 16 33 chr9 40379092 40379214 -77483413 + L2 LINE L2 2638 2757 -557 428 269 70 9 chr9 40379975 40380138 -77482489 - MIR3 SINE MIR -23 185 15 362 297 14 26 chr9 40380272 40380444 -77482183 + GA-rich Low_complexity Low_complexity 1 288 0 183 326 22 0 chr9 40380792 40380838 -77481789 + L3 LINE CR1 1519 1565 -12 226 351 53 0 chr9 40381016 40381110 -77481517 - MIR3 SINE MIR 0 208 110 225 180 0 62 chr9 40381741 40381919 -77480708 + (TGG)n Simple_repeat Simple_repeat 3 169 0 305 356 6 6 chr9 40381956 40382133 -77480494 + (TGG)n Simple_repeat Simple_repeat 2 178 0 545 281 0 27 chr9 40382163 40382246 -77480381 + (TGG)n Simple_repeat Simple_repeat 1 85 -95 2029 209 25 39 chr9 40382246 40382758 -77479869 - MLT1D LTR MaLR 0 505 1 545 281 0 27 chr9 40382758 40382859 -77479768 + (TGG)n Simple_repeat Simple_repeat 85 180 0 1971 125 7 0 chr9 40383175 40383464 -77479163 + AluSx SINE Alu 1 291 -21 338 328 138 0 chr9 40384783 40384870 -77477757 - MIR SINE MIR -10 252 178 1717 149 4 4 chr9 40384870 40385151 -77477476 - AluSx SINE Alu -31 281 1 338 328 138 0 chr9 40385151 40385237 -77477390 - MIR SINE MIR -84 178 55 479 229 169 60 chr9 40385986 40386137 -77476490 + L2 LINE L2 2851 2984 -329 183 42 0 0 chr9 40386137 40386161 -77476466 + (TTTC)n Simple_repeat Simple_repeat 2 25 0 479 229 169 60 chr9 40386161 40386276 -77476351 + L2 LINE L2 2984 3146 -167 1325 135 38 135 chr9 40386276 40386669 -77475958 - LTR37B LTR ERV1 0 468 114 448 240 71 26 chr9 40386670 40386824 -77475803 + MER3 DNA MER1_type 1 161 -48 215 188 62 16 chr9 40386842 40387255 -77475372 + (TTATA)n Simple_repeat Simple_repeat 4 137 0 250 135 54 14 chr9 40386898 40386937 -77475690 + (TA)n Simple_repeat Simple_repeat 1 37 -40 1523 199 0 3 chr9 40386937 40387223 -77475404 + AluSx SINE Alu 1 285 -27 250 135 54 14 chr9 40387223 40387257 -77475370 + (TA)n Simple_repeat Simple_repeat 37 77 0 330 165 38 0 chr9 40387293 40387372 -77475255 + MER3 DNA MER1_type 128 209 0 280 160 20 0 chr9 40387330 40387380 -77475247 - MER3 DNA MER1_type -119 90 40 * 539 234 66 36 chr9 40387455 40387622 -77475005 + L2 LINE L2 3142 3313 0 220 185 15 46 chr9 40388189 40388254 -77474373 + CT-rich Low_complexity Low_complexity 3 65 0 189 252 243 0 chr9 40388687 40388798 -77473829 - MIR3 SINE MIR -60 148 11 537 277 43 0 chr9 40389210 40389351 -77473276 - MIR3 SINE MIR -21 187 41 205 161 0 0 chr9 40389400 40389431 -77473196 + (CATCT)n Simple_repeat Simple_repeat 3 33 0 296 151 68 55 chr9 40389989 40390062 -77472565 - MLT1K LTR MaLR -5 583 510 3592 167 30 37 chr9 40391490 40392063 -77470564 - L1MB3 LINE L1 -7 6176 5608 1437 153 24 103 chr9 40392063 40392403 -77470224 - AluYb8 SINE Alu -5 313 1 3592 167 30 37 chr9 40392403 40392564 -77470063 - L1MB3 LINE L1 -575 5608 5447 203 250 95 17 chr9 40393160 40393276 -77469351 + L2 LINE L2 1980 2104 -1210 401 279 6 51 chr9 40394493 40394651 -77467976 - L2 LINE L2 -912 2402 2252 669 207 8 117 chr9 40394653 40394909 -77467718 - MLT1K LTR MaLR 0 588 361 941 306 50 62 chr9 40395801 40396367 -77466260 - L1MC4a LINE L1 -4 6117 5559 339 323 89 13 chr9 40396486 40396644 -77465983 - L1MC4a LINE L1 -2258 5550 5381 491 281 137 28 chr9 40396677 40397107 -77465520 - L1ME LINE L1 -304 6097 5621 324 256 23 83 chr9 40397697 40397830 -77464797 - L1ME LINE L1 -4323 2103 1979 282 29 0 0 chr9 40397850 40397885 -77464742 + (TG)n Simple_repeat Simple_repeat 2 36 0 1898 112 65 10 chr9 40398041 40398335 -77464292 - AluSx SINE Alu -1 311 2 930 130 68 7 chr9 40398363 40398507 -77464120 - MER30B DNA MER1_type 0 230 78 7923 160 170 23 chr9 40398507 40400037 -77462590 + MER52A LTR ERV1 1 1755 0 564 95 0 0 chr9 40400038 40400112 -77462515 - MER30B DNA MER1_type -113 77 4 380 213 12 0 chr9 40400115 40400195 -77462432 - L1ME2 LINE L1 -39 6125 6045 930 110 7 7 chr9 40400200 40400336 -77462291 + U8 snRNA snRNA 1 136 0 3178 189 27 24 chr9 40400378 40401049 -77461578 - L1ME2 LINE L1 -112 6052 5380 588 129 139 0 chr9 40401135 40401236 -77461391 - AluJo SINE Alu -177 135 21 461 292 116 69 chr9 40401238 40401644 -77460983 - L1ME2 LINE L1 -1054 5092 4650 2324 187 87 13 chr9 40401644 40402114 -77460513 + MLT1D LTR MaLR 1 505 0 461 292 116 69 chr9 40402114 40402238 -77460389 - L1ME2 LINE L1 -1496 4650 4533 992 252 22 0 chr9 40402306 40402528 -77460099 - LTR16C LTR ERVL -9 482 256 1173 254 134 20 chr9 40402830 40403239 -77459388 + LTR16C LTR ERVL 36 491 0 305 211 18 0 chr9 40404164 40404221 -77458406 - MIR SINE MIR -69 139 82 1571 174 11 14 chr9 40404533 40404849 -77457778 + AluJb SINE Alu 1 315 0 410 332 97 0 chr9 40405197 40405414 -77457213 - L1ME4a LINE L1 -282 5839 5602 229 222 0 0 chr9 40405543 40405588 -77457039 + MIR SINE MIR 108 152 -110 1989 135 3 6 chr9 40405608 40405920 -77456707 - AluSq SINE Alu -2 311 1 228 303 15 15 chr9 40406064 40406130 -77456497 - L2 LINE L2 -21 3292 3227 357 326 53 8 chr9 40406529 40406661 -77455966 - MIR SINE MIR -39 223 86 217 234 52 91 chr9 40407178 40407255 -77455372 + MIR SINE MIR 30 103 -105 214 264 164 27 chr9 40407394 40407504 -77455123 + L2 LINE L2 3147 3271 -1 288 338 58 0 chr9 40407690 40407829 -77454798 + L2 LINE L2 3104 3250 -22 1959 147 11 72 chr9 40408061 40408342 -77454285 - MLT1A1 LTR MaLR 0 365 111 2264 112 0 0 chr9 40408342 40408647 -77453980 - AluSx SINE Alu -7 305 1 1959 147 11 72 chr9 40408647 40408739 -77453888 - MLT1A1 LTR MaLR -254 111 15 588 260 276 0 chr9 40408835 40409016 -77453611 + MIR SINE MIR 27 257 -5 2326 85 3 0 chr9 40409134 40409439 -77453188 + AluSp SINE Alu 1 306 -7 440 180 63 36 chr9 40409483 40409594 -77453033 - MIR3 SINE MIR -81 127 14 422 278 113 14 chr9 40409994 40410206 -77452421 + L2 LINE L2 2555 2787 -527 706 80 0 0 chr9 40410230 40410318 -77452309 + AluSc SINE Alu 2 89 -220 1720 200 145 20 chr9 40410480 40410929 -77451698 - MLT1D LTR MaLR 0 505 1 709 218 94 59 chr9 40412272 40412478 -77450149 - MIR SINE MIR -14 248 37 342 234 95 108 chr9 40412511 40412669 -77449958 - MIR3 SINE MIR -17 191 36 928 238 48 65 chr9 40413141 40413494 -77449133 - L1ME3A LINE L1 -219 5951 5605 470 186 152 28 chr9 40413556 40413701 -77448926 - LTR50 LTR ERVL -617 178 16 330 269 198 44 chr9 40414180 40414299 -77448328 - L1ME4a LINE L1 -72 6049 5950 1514 177 10 47 chr9 40414299 40414598 -77448029 - AluJo SINE Alu -14 288 1 330 269 198 44 chr9 40414598 40414705 -77447922 - L1ME4a LINE L1 -171 5950 5788 230 204 41 0 chr9 40414712 40414761 -77447866 - MLT1K LTR MaLR -20 568 518 594 270 87 61 chr9 40415112 40415543 -77447084 - L1ME4a LINE L1 -376 5745 5301 255 333 139 14 chr9 40415626 40415770 -77446857 + L2 LINE L2 3106 3267 -5 262 241 259 0 chr9 40415869 40415977 -77446650 - L2 LINE L2 0 3272 3137 802 233 23 51 chr9 40416091 40416306 -77446321 - MER58C DNA MER1_type -6 209 1 313 157 229 36 chr9 40416315 40416398 -77446229 - MIR3 SINE MIR -6 202 104 284 186 145 57 chr9 40417204 40417328 -77445299 + MIR3 SINE MIR 64 198 -10 218 358 8 0 chr9 40417620 40417743 -77444884 + (TG)n Simple_repeat Simple_repeat 1 124 0 383 214 149 91 chr9 40417955 40418053 -77444574 - MER5A DNA MER1_type 0 189 77 1712 182 0 19 chr9 40418053 40418360 -77444267 - AluJo SINE Alu -11 301 1 383 214 149 91 chr9 40418360 40418415 -77444212 - MER5A DNA MER1_type -112 77 27 1109 211 4 40 chr9 40418471 40418543 -77444084 + MER58A DNA MER1_type 5 78 -2342 917 210 17 6 chr9 40418543 40418719 -77443908 - MER45A DNA AcHobo 0 178 1 1109 211 4 40 chr9 40418719 40418874 -77443753 + MER58A DNA MER1_type 78 224 0 439 219 70 15 chr9 40418891 40419046 -77443581 - MER5B DNA MER1_type -7 171 15 705 250 103 0 chr9 40420036 40420220 -77442407 - MIR SINE MIR -52 210 8 2125 121 0 0 chr9 40421193 40421490 -77441137 + AluSg SINE Alu 1 297 -13 680 101 28 0 chr9 40421516 40421625 -77441002 + CT-rich Low_complexity Low_complexity 4 115 0 2034 142 3 0 chr9 40421625 40421934 -77440693 - AluSx SINE Alu -2 310 1 475 189 90 18 chr9 40422045 40422156 -77440471 + LTR34 LTR ERV1 48 166 -533 3318 91 83 4 chr9 40422256 40422751 -77439876 + LTR34 LTR ERV1 166 699 0 1423 227 59 59 chr9 40422802 40422972 -77439655 + MLT1J LTR MaLR 52 221 -290 2163 104 7 3 chr9 40422972 40423279 -77439348 + AluSc SINE Alu 1 308 -1 1423 227 59 59 chr9 40423279 40423531 -77439096 + MLT1J LTR MaLR 220 474 -37 494 82 0 0 chr9 40423579 40423639 -77438988 + LTR10A LTR ERV1 1 60 -549 1015 86 0 7 chr9 40423639 40423786 -77438841 - LTR10A LTR ERV1 0 609 416 381 300 91 18 chr9 40424591 40424811 -77437816 + MER113 DNA MER1_type? 245 480 -41 818 223 0 12 chr9 40424896 40425062 -77437565 - FRAM SINE Alu -2 164 1 235 254 65 162 chr9 40425121 40425306 -77437321 - MIR3 SINE MIR -5 203 37 220 184 161 69 chr9 40426295 40426382 -77436245 - MIR SINE MIR -50 212 118 222 37 0 0 chr9 40426709 40426736 -77435891 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 745 258 58 44 chr9 40427693 40427968 -77434659 + LTR33 LTR ERVL 1 279 -242 1268 189 0 0 chr9 40427969 40428191 -77434436 - AluSx SINE Alu -90 222 1 2008 115 0 0 chr9 40428249 40428527 -77434100 + AluSg SINE Alu 1 278 -32 251 0 59 0 chr9 40428530 40428564 -77434063 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 339 224 13 0 chr9 40428570 40428646 -77433981 + LTR33 LTR ERVL 328 404 -117 296 294 20 10 chr9 40429798 40429900 -77432727 + MIR SINE MIR 45 147 -61 416 192 150 31 chr9 40430378 40430520 -77432107 + MIR SINE MIR 36 192 -63 1301 81 17 0 chr9 40430907 40431081 -77431546 - AluSx SINE Alu -135 177 1 6877 186 25 8 chr9 40431081 40431297 -77431330 - L1 LINE L1 -2356 3790 3579 2466 71 0 0 chr9 40431297 40431605 -77431022 - AluY SINE Alu -3 308 1 6877 186 25 8 chr9 40431605 40432825 -77429802 - L1 LINE L1 -2567 3579 2330 2698 216 104 31 chr9 40432849 40433168 -77429459 + L1ME1 LINE L1 4811 5105 -1061 1985 109 0 11 chr9 40433168 40433480 -77429147 + AluSx SINE Alu 6 312 0 2698 216 104 31 chr9 40433480 40434428 -77428199 + L1ME1 LINE L1 5105 6161 -5 372 318 42 17 chr9 40434656 40434892 -77427735 + L2 LINE L2 2836 3077 -195 507 285 35 0 chr9 40434918 40435062 -77427565 + MIR SINE MIR 106 254 -8 185 286 0 0 chr9 40435186 40435228 -77427399 + L2 LINE L2 3136 3177 -95 257 239 28 14 chr9 40435251 40435322 -77427305 - L2 LINE L2 -5 3308 3237 578 198 141 22 chr9 40435357 40435523 -77427104 + MIR SINE MIR 13 178 -54 1296 124 0 0 chr9 40435527 40435720 -77426907 - AluSg/x SINE Alu 0 310 118 4092 29 0 15 chr9 40435820 40436301 -77426326 + SVA Other Other 913 1386 0 291 268 0 37 chr9 40436645 40436727 -77425900 - LTR16C LTR ERVL 0 491 413 250 173 96 0 chr9 40437254 40437306 -77425321 - L1ME3 LINE L1 -12 6150 6094 2347 89 0 0 chr9 40437389 40437691 -77424936 + AluSx SINE Alu 1 302 -10 2517 287 32 7 chr9 40438006 40438136 -77424491 - ERVL LTR ERVL -436 5328 5203 2323 68 0 3 chr9 40438136 40438443 -77424184 - AluY SINE Alu -5 306 1 2517 287 32 7 chr9 40438443 40439051 -77423576 - ERVL LTR ERVL -561 5203 4571 659 322 8 19 chr9 40439431 40439692 -77422935 - MLT2E LTR ERVL -14 614 357 254 296 6 111 chr9 40439770 40439932 -77422695 - MLT2E LTR ERVL -483 145 1 324 254 0 0 chr9 40439932 40439999 -77422628 + L1ME4a LINE L1 5745 5811 -310 1555 201 19 79 chr9 40439999 40440416 -77422211 - MLT2C1 LTR ERVL 0 397 6 250 339 35 0 chr9 40440567 40440741 -77421886 + L1ME4a LINE L1 5939 6118 -3 251 277 24 0 chr9 40442029 40442112 -77420515 + GA-rich Low_complexity Low_complexity 2 86 0 193 348 134 0 chr9 40442227 40442339 -77420288 - L2 LINE L2 -24 3248 3122 223 261 31 0 chr9 40442374 40442439 -77420188 + L2 LINE L2 3188 3254 -18 185 382 0 0 chr9 40442459 40442535 -77420092 - L2 LINE L2 -12 3301 3226 381 295 114 42 chr9 40442801 40442994 -77419633 + MLT1I LTR MaLR 160 366 -43 412 228 203 87 chr9 40443726 40444218 -77418409 + LTR67 LTR ERVL 2 550 -7 277 303 156 16 chr9 40444588 40444710 -77417917 + MER5A DNA MER1_type 3 141 -48 347 324 131 12 chr9 40445115 40445359 -77417268 - L2 LINE L2 -832 2482 2210 210 71 0 0 chr9 40445537 40445565 -77417062 + (CAGTT)n Simple_repeat Simple_repeat 5 32 0 209 227 0 0 chr9 40445597 40445641 -77416986 - L2 LINE L2 -8 3305 3262 652 314 114 36 chr9 40446049 40446434 -77416193 - L3 LINE CR1 -117 1460 1046 573 229 0 0 chr9 40446709 40446818 -77415809 + MER5A DNA MER1_type 4 112 -77 2463 166 9 14 chr9 40446850 40447278 -77415349 - MSTB LTR MaLR 0 426 1 326 324 131 12 chr9 40447349 40447660 -77414967 + L2 LINE L2 2686 3041 -231 1314 222 60 106 chr9 40447695 40448150 -77414477 + MLT2B1 LTR ERVL 1 520 0 229 342 250 0 chr9 40448180 40448300 -77414327 + L2 LINE L2 3107 3256 -16 289 210 30 140 chr9 40448901 40449001 -77413626 + MER91A DNA MER1_type 1 89 -101 254 140 0 60 chr9 40449043 40449093 -77413534 + MER91B DNA MER1_type 84 130 -60 25 0 0 0 chr9 40449719 40449744 -77412883 + GC_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr9 40449973 40450001 -77412626 + GC_rich Low_complexity Low_complexity 1 28 0 2644 90 25 82 chr9 40450052 40450818 -77411809 + SVA Other Other 393 868 -520 262 200 67 44 chr9 40450982 40451072 -77411555 + MIR3 SINE MIR 87 178 -30 469 297 97 0 chr9 40451452 40451617 -77411010 - MIR SINE MIR -8 254 74 604 197 72 7 chr9 40452728 40452880 -77409747 + Charlie8 DNA MER1_type 39 200 -2217 294 260 120 90 chr9 40453394 40453518 -77409109 + L2 LINE L2 2951 3070 -202 4277 92 0 0 chr9 40453518 40454072 -77408555 + MER41A LTR ERV1 1 554 0 294 260 120 90 chr9 40454072 40454247 -77408380 + L2 LINE L2 3070 3259 -13 1941 141 23 0 chr9 40454284 40454589 -77408038 + AluJb SINE Alu 1 312 0 341 284 132 53 chr9 40454607 40454797 -77407830 + MIR SINE MIR 37 241 -21 242 359 0 13 chr9 40454836 40454914 -77407713 - MIR SINE MIR -90 118 42 216 276 122 49 chr9 40455506 40455629 -77406998 + MIR3 SINE MIR 15 146 -62 314 245 226 0 chr9 40455649 40455751 -77406876 - L2 LINE L2 -16 3297 3173 1827 153 125 11 chr9 40456463 40456816 -77405811 - MSTD LTR MaLR -2 394 2 273 239 45 30 chr9 40456826 40456893 -77405734 - MIR3 SINE MIR -51 157 90 446 257 80 57 chr9 40456953 40457128 -77405499 - MIR SINE MIR -82 180 2 582 240 33 0 chr9 40457169 40457319 -77405308 + MER5B DNA MER1_type 1 155 -23 321 296 0 11 chr9 40457355 40457443 -77405184 - MER5A DNA MER1_type -93 96 10 694 232 30 42 chr9 40457686 40457732 -77404895 - MER96 DNA MER1_type? 0 175 130 2119 93 0 10 chr9 40457732 40458058 -77404569 - AluY SINE Alu 0 311 1 694 232 30 42 chr9 40458058 40458179 -77404448 - MER96 DNA MER1_type? -45 130 10 939 179 27 5 chr9 40458371 40458555 -77404072 + MER5A DNA MER1_type 2 189 0 195 215 154 60 chr9 40458562 40458711 -77403916 + MIR3 SINE MIR 30 192 -16 987 139 12 17 chr9 40459231 40459430 -77403197 - MSTD LTR MaLR -169 196 1 579 218 78 115 chr9 40459430 40459673 -77402954 - MIR SINE MIR -25 237 4 309 214 10 97 chr9 40459774 40459877 -77402750 + MIR SINE MIR 94 187 -75 270 195 74 4 chr9 40460027 40460113 -77402514 - MIR SINE MIR -68 140 49 1595 230 48 58 chr9 40460920 40461510 -77401117 + L1ME2 LINE L1 5588 6164 0 464 233 112 73 chr9 40461540 40461746 -77400881 + L1MC4 LINE L1 7826 8039 -3 1897 122 0 44 chr9 40461776 40462076 -77400551 - AluSq SINE Alu 0 424 141 2226 86 0 0 chr9 40462076 40462400 -77400227 - AluY SINE Alu 0 311 1 1897 122 0 44 chr9 40462400 40462536 -77400091 - AluSq SINE Alu -283 141 1 2253 110 51 25 chr9 40462560 40462915 -77399712 - THE1B LTR MaLR 0 364 1 336 293 90 12 chr9 40462934 40463101 -77399526 - L1MC/D LINE L1 -2019 5789 5610 293 245 160 0 chr9 40463125 40463219 -77399408 - MIR SINE MIR -79 129 21 1922 139 7 13 chr9 40463449 40463759 -77398868 + AluSx SINE Alu 5 312 0 4009 174 35 3 chr9 40463853 40464539 -77398088 + L1MA4 LINE L1 3 710 -4618 5907 214 35 47 chr9 40464568 40466026 -77396601 + L1MA4 LINE L1 772 2195 -4133 2039 138 0 0 chr9 40466026 40466330 -77396297 + AluSx SINE Alu 1 304 -8 5907 214 35 47 chr9 40466330 40466895 -77395732 + L1MA4 LINE L1 2195 2765 -3563 946 198 0 0 chr9 40466915 40467087 -77395540 + FRAM SINE Alu 1 166 -10 9432 153 31 18 chr9 40467090 40468271 -77394356 + L1MA4 LINE L1 3747 4912 -1485 2145 117 0 0 chr9 40468271 40468569 -77394058 + AluSx SINE Alu 1 298 -14 9432 153 31 18 chr9 40468569 40468761 -77393866 + L1MA4 LINE L1 4912 5100 -1297 1691 168 0 30 chr9 40468761 40469065 -77393562 + AluJo SINE Alu 3 297 -15 221 0 0 33 chr9 40469068 40469098 -77393529 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 9432 153 31 18 chr9 40469098 40469603 -77393024 + L1MA4 LINE L1 5101 5654 -743 3812 148 14 2 chr9 40469684 40470327 -77392300 + L1MA4 LINE L1 5825 6475 -7 2812 122 69 4 chr9 40471156 40471606 -77391021 + LTR10A LTR ERV1 69 547 -62 357 232 24 12 chr9 40471895 40471977 -77390650 - MER5A DNA MER1_type -77 112 30 250 278 0 0 chr9 40472043 40472097 -77390530 + L2 LINE L2 3219 3272 0 308 214 79 11 chr9 40472105 40472194 -77390433 - MER103 DNA DNA -70 96 2 21 36 0 0 chr9 40473126 40473154 -77389473 + AT_rich Low_complexity Low_complexity 1 28 0 408 290 77 48 chr9 40473582 40473961 -77388666 + HAL1b LINE L1 351 740 -608 2357 83 0 0 chr9 40474102 40474403 -77388224 + AluY SINE Alu 1 301 -10 22 70 0 0 chr9 40474459 40474502 -77388125 + AT_rich Low_complexity Low_complexity 1 43 0 2606 159 96 11 chr9 40474768 40475289 -77387338 + L1MB4 LINE L1 5616 6180 0 450 0 0 0 chr9 40475422 40475472 -77387155 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 655 193 0 9 chr9 40475475 40475589 -77387038 - FLAM_C SINE Alu -26 117 5 1821 218 29 73 chr9 40475885 40477080 -77385547 - L1MC4 LINE L1 -262 7780 6483 1327 164 168 13 chr9 40477080 40477378 -77385249 + MER2 DNA MER2_type 1 344 0 1821 218 29 73 chr9 40477378 40477402 -77385225 - L1MC4 LINE L1 -1559 6483 6459 2117 159 19 65 chr9 40478278 40478706 -77383921 - MLT2D LTR ERVL -6 408 1 1755 198 37 26 chr9 40479125 40479504 -77383123 - MLT1B LTR MaLR -7 383 1 357 24 0 0 chr9 40480472 40480514 -77382113 + (TG)n Simple_repeat Simple_repeat 1 42 0 1540 184 11 46 chr9 40482053 40482087 -77380540 - L1MB8 LINE L1 -6 6172 6138 1783 150 155 26 chr9 40482087 40482467 -77380160 - MSTB1 LTR MaLR 0 432 4 1540 184 11 46 chr9 40482467 40482802 -77379825 - L1MB8 LINE L1 -40 6138 5816 356 333 12 29 chr9 40483516 40483687 -77378940 + L1M4 LINE L1 3717 3884 -2262 2454 136 57 2 chr9 40483832 40484233 -77378394 - MSTB1 LTR MaLR 0 419 14 274 277 143 8 chr9 40484233 40484352 -77378275 - L1MC4 LINE L1 -593 7449 7315 544 219 73 0 chr9 40484472 40484609 -77378018 - MIR SINE MIR 0 262 116 192 77 0 0 chr9 40484691 40484717 -77377910 + (A)n Simple_repeat Simple_repeat 1 26 0 1780 142 22 26 chr9 40484740 40484879 -77377748 + AluSx SINE Alu 1 139 -173 2308 86 3 0 chr9 40484879 40485183 -77377444 + AluSp SINE Alu 1 305 -8 1780 142 22 26 chr9 40485183 40485354 -77377273 + AluSx SINE Alu 139 310 -2 195 42 0 0 chr9 40486349 40486373 -77376254 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 403 277 104 42 chr9 40486463 40486723 -77375904 - MLT1J LTR MaLR -9 502 227 1116 199 99 70 chr9 40486765 40486807 -77375820 - Zaphod DNA AcHobo 0 4031 3992 1690 123 21 99 chr9 40486807 40487141 -77375486 + AluYb8 SINE Alu 1 308 -10 1116 199 99 70 chr9 40487141 40487524 -77375103 - Zaphod DNA AcHobo -39 3992 3594 1816 165 76 3 chr9 40487531 40487846 -77374781 + MER1B DNA MER1_type 1 338 -1 844 241 61 5 chr9 40487855 40488067 -77374560 + MER58A DNA MER1_type 1 224 0 2654 233 43 68 chr9 40488084 40488161 -77374466 - Zaphod DNA AcHobo -3061 970 893 2180 126 0 0 chr9 40488161 40488462 -77374165 + AluSx SINE Alu 1 301 -11 2654 233 43 68 chr9 40488462 40488561 -77374066 - Zaphod DNA AcHobo -3138 893 793 519 139 50 20 chr9 40488561 40488662 -77373965 + U13 snRNA snRNA 1 104 0 2654 233 43 68 chr9 40488662 40489400 -77373227 - Zaphod DNA AcHobo -3238 793 38 1688 199 65 8 chr9 40489400 40489772 -77372855 - MSTD LTR MaLR -2 394 2 417 20 0 0 chr9 40489774 40489824 -77372803 + (TG)n Simple_repeat Simple_repeat 1 50 0 342 0 0 0 chr9 40489823 40489861 -77372766 + (GA)n Simple_repeat Simple_repeat 1 38 0 * 2654 233 43 68 chr9 40489824 40489903 -77372724 - Zaphod DNA AcHobo -3994 37 33 1108 189 112 45 chr9 40491909 40492221 -77370406 + MLT1D LTR MaLR 1 333 -172 1931 74 0 4 chr9 40492238 40492482 -77370145 + LTR8 LTR ERV1 1 243 -448 2964 108 5 5 chr9 40492763 40493170 -77369457 + LTR8 LTR ERV1 246 652 -39 492 165 12 0 chr9 40493179 40493264 -77369363 + MLT1D LTR MaLR 371 456 -49 3581 147 7 17 chr9 40493271 40493490 -77369137 + MER50 LTR ERV1 1 221 -513 2017 122 3 13 chr9 40493490 40493793 -77368834 + AluSx SINE Alu 1 300 -12 3581 147 7 17 chr9 40493793 40494152 -77368475 + MER50 LTR ERV1 221 573 -161 745 137 7 50 chr9 40494153 40494292 -77368335 - FLAM_C SINE Alu -9 134 2 819 164 13 13 chr9 40494293 40494445 -77368182 + MER50 LTR ERV1 560 711 -23 246 324 37 9 chr9 40494594 40494702 -77367925 - MIR SINE MIR -87 175 65 656 232 105 11 chr9 40494748 40494929 -77367698 + MIR3 SINE MIR 5 202 -6 1054 167 8 91 chr9 40495159 40495411 -77367216 - AluJo SINE Alu -19 293 63 743 207 157 80 chr9 40496025 40496324 -77366303 + MER115 DNA AcHobo 112 433 -260 200 261 57 34 chr9 40496459 40496547 -77366080 - L2 LINE L2 -213 3059 2970 1999 112 20 0 chr9 40497080 40497375 -77365252 + AluSx SINE Alu 1 301 -11 629 302 107 47 chr9 40497550 40497980 -77364647 - MLT1K LTR MaLR -8 580 125 292 331 39 65 chr9 40499429 40499583 -77363044 - MIR3 SINE MIR -1 207 58 262 0 53 0 chr9 40500457 40500495 -77362132 + (TGGGGG)n Simple_repeat Simple_repeat 2 41 0 413 313 108 38 chr9 40500910 40501150 -77361477 + L3 LINE CR1 1306 1562 -15 368 177 0 0 chr9 40501561 40501623 -77361004 + MIR SINE MIR 89 150 -112 292 299 11 11 chr9 40501696 40501783 -77360844 + MER117 DNA MER1_type 111 197 0 300 53 0 0 chr9 40501958 40501996 -77360631 + (TTCC)n Simple_repeat Simple_repeat 4 41 0 2039 141 0 0 chr9 40502015 40502327 -77360300 - AluSx SINE Alu 0 312 1 344 353 72 14 chr9 40502692 40502913 -77359714 + L2 LINE L2 2817 3050 -222 1674 151 52 119 chr9 40503307 40503770 -77358857 - MSTB1 LTR MaLR 0 432 1 2169 129 45 3 chr9 40504003 40504337 -77358290 + MER7A DNA MER2_type 1 346 0 428 198 96 108 chr9 40504482 40504639 -77357988 + MIR SINE MIR 78 232 -30 2265 87 3 0 chr9 40504733 40505031 -77357596 - AluSp SINE Alu -14 299 1 999 98 0 0 chr9 40505033 40505165 -77357462 - AluSp SINE Alu -181 132 1 1637 176 6 29 chr9 40505165 40505478 -77357149 - AluJb SINE Alu -6 306 1 2071 221 65 25 chr9 40505496 40506022 -77356605 - MLT1H LTR MaLR -2 547 1 1020 275 64 38 chr9 40506709 40507054 -77355573 + MLT1H LTR MaLR 1 354 -195 322 167 167 24 chr9 40507037 40507121 -77355506 + MLT1I LTR MaLR 281 376 -33 * 446 301 41 53 chr9 40507208 40507435 -77355192 + L2 LINE L2 2800 3023 -249 225 188 0 0 chr9 40507505 40507553 -77355074 + (TA)n Simple_repeat Simple_repeat 2 49 0 2381 136 20 83 chr9 40507612 40507684 -77354943 - MSTA LTR MaLR 0 428 353 1792 109 8 4 chr9 40507684 40507940 -77354687 + AluSq SINE Alu 1 257 -56 2381 136 20 83 chr9 40507940 40508324 -77354303 - MSTA LTR MaLR -75 353 1 222 224 224 0 chr9 40508382 40508440 -77354187 + L2 LINE L2 3201 3271 -1 195 42 0 0 chr9 40508644 40508668 -77353959 + (A)n Simple_repeat Simple_repeat 1 24 0 364 318 24 65 chr9 40509338 40509508 -77353119 + L2 LINE L2 3109 3271 -1 255 266 55 9 chr9 40509522 40509631 -77352996 - L1ME4a LINE L1 -67 6054 5941 2235 82 3 13 chr9 40509650 40509956 -77352671 - AluY SINE Alu -8 303 1 482 283 115 45 chr9 40509976 40510262 -77352365 - L1ME4a LINE L1 -263 5858 5553 209 273 20 61 chr9 40510389 40510488 -77352139 + MIR SINE MIR 108 202 -60 195 269 108 21 chr9 40510855 40510948 -77351679 + MIR3 SINE MIR 87 187 -21 369 275 33 50 chr9 40511276 40511396 -77351231 + MIR SINE MIR 145 262 0 221 301 107 10 chr9 40511721 40511824 -77350803 + L2 LINE L2 3140 3252 -20 521 340 0 6 chr9 40511824 40511983 -77350644 - L2 LINE L2 0 3313 3156 284 315 161 0 chr9 40512439 40512588 -77350039 - L2 LINE L2 -469 2845 2673 219 280 0 0 chr9 40512868 40512918 -77349709 + G-rich Low_complexity Low_complexity 3 52 0 204 163 23 0 chr9 40513257 40513300 -77349327 + (TAA)n Simple_repeat Simple_repeat 2 45 0 537 231 124 24 chr9 40513402 40513571 -77349056 + L2 LINE L2 3128 3313 0 359 275 34 54 chr9 40513570 40513719 -77348908 - L3 LINE CR1 -115 1462 1317 * 223 274 306 8 chr9 40513823 40513947 -77348680 - L3 LINE CR1 -429 1148 988 1213 225 60 67 chr9 40514179 40514747 -77347880 + L1MEc LINE L1 2080 2604 -3611 1906 144 3 3 chr9 40514747 40515045 -77347582 - AluJo SINE Alu -6 306 9 1213 225 60 67 chr9 40515045 40515137 -77347490 + L1MEc LINE L1 2604 2695 -3520 2167 110 7 0 chr9 40515332 40515641 -77346986 + AluSx SINE Alu 1 311 -1 1098 276 43 18 chr9 40515686 40516137 -77346490 + L1MDa LINE L1 1809 2311 -4410 9049 129 22 19 chr9 40516152 40517165 -77345462 - L1MA3 LINE L1 0 6305 5296 2085 106 0 3 chr9 40517165 40517491 -77345136 - AluSq SINE Alu 0 325 1 9049 129 22 19 chr9 40517491 40518748 -77343879 - L1MA3 LINE L1 -1009 5296 4012 2125 119 0 0 chr9 40518748 40519042 -77343585 - AluSx SINE Alu -18 294 1 9049 129 22 19 chr9 40519042 40519271 -77343356 - L1MA3 LINE L1 -2293 4012 3785 226 188 20 0 chr9 40520188 40520289 -77342338 + (TA)n Simple_repeat Simple_repeat 1 103 0 1936 116 7 10 chr9 40520293 40520586 -77342041 - AluSx SINE Alu -20 292 1 1301 260 85 16 chr9 40520647 40521070 -77341557 + LTR16B LTR ERVL 1 452 -12 3251 299 55 35 chr9 40521086 40522478 -77340149 + HERV16 LTR ERVL 12 1431 -3565 1768 191 31 28 chr9 40522570 40522927 -77339700 + MLT1A2 LTR MaLR 1 358 -16 1200 201 18 0 chr9 40522928 40523152 -77339475 + MLT2B3 LTR ERVL 5 232 -322 873 206 50 40 chr9 40523170 40523369 -77339258 - MLT1A2 LTR MaLR -85 289 89 1581 172 10 17 chr9 40523373 40523664 -77338963 + MLT2B3 LTR ERVL 251 539 -15 801 310 41 21 chr9 40523705 40523995 -77338632 + HERV16 LTR ERVL 1614 1909 -3087 1417 196 57 0 chr9 40524007 40524272 -77338355 - MER58 DNA MER1_type -59 282 3 276 280 0 13 chr9 40524956 40525031 -77337596 - Charlie8 DNA MER1_type -3 2414 2341 2115 127 0 0 chr9 40525084 40525391 -77337236 - AluSx SINE Alu -5 307 1 267 286 0 0 chr9 40525439 40525495 -77337132 - Charlie8 DNA MER1_type -2360 57 2 463 264 17 46 chr9 40525565 40525739 -77336888 - MIR3 SINE MIR -37 171 3 471 293 111 50 chr9 40526531 40526811 -77335816 + L3 LINE CR1 1257 1553 -24 215 319 159 0 chr9 40527769 40527838 -77334789 + L2 LINE L2 3111 3190 -82 469 215 131 12 chr9 40527996 40528277 -77334350 + LTR16A1 LTR ERVL 145 437 -20 197 267 67 0 chr9 40528332 40528392 -77334235 - MIR3 SINE MIR -28 180 117 2763 129 54 0 chr9 40528412 40528855 -77333772 - MER41E LTR ERV1 -45 467 1 441 0 0 0 chr9 40528892 40528941 -77333686 + (TG)n Simple_repeat Simple_repeat 1 49 0 204 326 43 0 chr9 40529954 40530046 -77332581 + MIR SINE MIR 30 125 -83 201 333 81 0 chr9 40530082 40530169 -77332458 - L2 LINE L2 -39 3233 3140 907 188 21 5 chr9 40530404 40530590 -77332037 + MER5A DNA MER1_type 1 189 0 223 261 46 59 chr9 40531348 40531501 -77331126 - L2 LINE L2 -292 2980 2830 393 266 39 16 chr9 40532075 40532203 -77330424 + MIR3 SINE MIR 30 160 -48 916 227 22 4 chr9 40534295 40534524 -77328103 + L2 LINE L2 2831 3063 -250 1020 155 0 30 chr9 40534550 40534750 -77327877 - AluJb SINE Alu 0 312 119 467 291 133 0 chr9 40534754 40534919 -77327708 + L2 LINE L2 3127 3313 0 1215 83 171 10 chr9 40534937 40535038 -77327589 + MER30 DNA MER1_type 2 85 -145 197 33 33 0 chr9 40535038 40535068 -77327559 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 1215 83 171 10 chr9 40535068 40535159 -77327468 + MER30 DNA MER1_type 85 225 -5 495 248 25 0 chr9 40535491 40535612 -77327015 + MIR SINE MIR 88 211 -51 2372 246 10 12 chr9 40535724 40536240 -77326387 - LTR40a LTR ERVL -2 517 3 357 274 205 42 chr9 40536734 40536993 -77325634 - L2 LINE L2 -4 3268 2968 465 229 52 7 chr9 40537139 40537292 -77325335 - L1ME4a LINE L1 0 6121 5962 180 262 0 24 chr9 40538560 40538602 -77324025 + L3b LINE CR1 1522 1562 -21 453 330 178 23 chr9 40539120 40539681 -77322946 + L2 LINE L2 2395 3042 -230 2594 171 39 8 chr9 40539728 40540218 -77322409 + MLT1D LTR MaLR 1 505 0 1961 112 7 0 chr9 40540545 40540848 -77321779 + AluSx SINE Alu 2 306 0 260 264 127 18 chr9 40540940 40541050 -77321577 - MIR3 SINE MIR -3 205 84 604 245 88 19 chr9 40541094 40541253 -77321374 - MIR SINE MIR -91 171 2 454 348 0 11 chr9 40542100 40542367 -77320260 + (CA)n Simple_repeat Simple_repeat 1 264 0 429 246 102 55 chr9 40542887 40543051 -77319576 - MIR SINE MIR -54 208 38 215 183 48 39 chr9 40544390 40544494 -77318133 + (TCTA)n Simple_repeat Simple_repeat 3 107 0 312 268 123 72 chr9 40544495 40544771 -77317856 - L1MEd LINE L1 -4875 1244 955 209 290 32 43 chr9 40544822 40544915 -77317712 + L2 LINE L2 2261 2352 -962 294 260 103 59 chr9 40544973 40545155 -77317472 - MLT1J LTR MaLR -196 315 159 229 360 10 20 chr9 40546385 40546485 -77316142 + MIR SINE MIR 19 117 -91 622 220 74 184 chr9 40546636 40547082 -77315545 - L2 LINE L2 -2 3270 2874 348 233 187 15 chr9 40547971 40548106 -77314521 - MIR3 SINE MIR -19 189 35 1824 254 97 23 chr9 40548319 40548938 -77313689 + L1MEc LINE L1 498 1162 -5234 1410 236 163 2 chr9 40548931 40549367 -77313260 + L1ME1 LINE L1 5598 6103 -63 * 1408 162 41 68 chr9 40549383 40549722 -77312905 + L1MD2 LINE L1 6011 6340 -19 245 252 301 31 chr9 40550286 40550512 -77312115 + LTR67 LTR ERVL 2 288 -269 2778 245 105 27 chr9 40550680 40551454 -77311173 - L2 LINE L2 -123 3190 2477 1315 209 84 50 chr9 40551454 40551813 -77310814 + MLT1A2 LTR MaLR 1 371 -3 2778 245 105 27 chr9 40551813 40552028 -77310599 - L2 LINE L2 -836 2477 2280 14430 144 16 42 chr9 40552028 40552380 -77310247 - Tigger1 DNA MER2_type 0 2418 2059 1464 114 0 0 chr9 40552380 40552581 -77310046 + AluSx SINE Alu 1 201 -111 14430 144 16 42 chr9 40552581 40552693 -77309934 - Tigger1 DNA MER2_type -359 2059 1946 2181 92 0 0 chr9 40552693 40553010 -77309617 - AluSx SINE Alu 0 317 1 14430 144 16 42 chr9 40553010 40553434 -77309193 - Tigger1 DNA MER2_type -472 1946 1513 2214 83 0 40 chr9 40553434 40553758 -77308869 - AluY SINE Alu 0 311 1 14430 144 16 42 chr9 40553758 40555346 -77307281 - Tigger1 DNA MER2_type -905 1513 1 2778 245 105 27 chr9 40555346 40555529 -77307098 - L2 LINE L2 -1033 2280 1924 1040 128 26 6 chr9 40555564 40555720 -77306907 + MER70B LTR ERVL 1 159 -419 * 2533 199 36 2 chr9 40555719 40556191 -77306436 + MER70B LTR ERVL 90 577 -1 950 212 121 103 chr9 40556822 40557173 -77305454 + MLT2D LTR ERVL 2 362 -52 596 31 31 10 chr9 40557173 40557269 -77305358 + (TAGA)n Simple_repeat Simple_repeat 1 98 0 950 212 121 103 chr9 40557269 40557323 -77305304 + MLT2D LTR ERVL 362 414 0 234 351 27 9 chr9 40557430 40557541 -77305086 + MIR3 SINE MIR 93 205 -3 241 270 38 82 chr9 40557651 40557810 -77304817 - L2 LINE L2 -271 3001 2850 509 298 86 0 chr9 40557858 40558009 -77304618 - MIR SINE MIR -79 183 20 1565 155 7 15 chr9 40559386 40559657 -77302970 - MER2 DNA MER2_type -76 269 1 411 148 111 12 chr9 40559781 40559816 -77302811 - MLT2C2 LTR ERVL 0 464 434 375 23 0 0 chr9 40559816 40559860 -77302767 + (TG)n Simple_repeat Simple_repeat 2 45 0 411 148 111 12 chr9 40559860 40559905 -77302722 - MLT2C2 LTR ERVL -30 434 376 1837 130 0 40 chr9 40561735 40562057 -77300570 + AluSx SINE Alu 1 309 -3 3334 53 0 5 chr9 40562707 40563119 -77299508 - L1PA8 LINE L1 0 6172 5763 475 65 0 0 chr9 40563119 40563181 -77299446 + L1P3 LINE L1 5656 5717 -455 335 253 99 0 chr9 40563212 40563303 -77299324 - MIR3 SINE MIR -12 196 97 201 286 71 0 chr9 40563400 40563456 -77299171 - MIR SINE MIR -55 153 94 270 221 0 52 chr9 40563510 40563664 -77298963 + CT-rich Low_complexity Low_complexity 3 148 0 797 164 0 0 chr9 40564897 40565019 -77297608 + AluSq/x SINE Alu 2 123 -189 336 249 41 29 chr9 40565651 40565791 -77296836 + MIR SINE MIR 50 149 -59 964 217 95 43 chr9 40566052 40566175 -77296452 + LTR37A LTR ERV1 41 156 -270 2153 97 0 7 chr9 40566175 40566475 -77296152 + AluSg SINE Alu 1 298 -12 964 217 95 43 chr9 40566475 40566678 -77295949 + LTR37A LTR ERV1 156 384 -42 1055 213 42 34 chr9 40566681 40566944 -77295683 - MLT1E3 LTR MaLR 0 624 360 190 333 17 0 chr9 40566963 40567023 -77295604 + L2 LINE L2 2991 3051 -221 511 262 78 21 chr9 40567029 40567170 -77295457 + MIR SINE MIR 2 150 -112 485 276 32 32 chr9 40567227 40567383 -77295244 - MIR SINE MIR -3 259 104 22 35 0 0 chr9 40567718 40567747 -77294880 + AT_rich Low_complexity Low_complexity 1 29 0 530 281 92 57 chr9 40568953 40569232 -77293395 + L1ME4a LINE L1 5125 5393 -728 1864 114 64 10 chr9 40569232 40569529 -77293098 + AluSq SINE Alu 1 313 0 530 281 92 57 chr9 40569529 40570129 -77292498 + L1ME4a LINE L1 5393 6026 -95 204 343 15 0 chr9 40570612 40570679 -77291948 + L2 LINE L2 2875 2942 -330 403 329 50 0 chr9 40570689 40570829 -77291798 - L1MEc LINE L1 -3709 2420 2274 322 347 111 27 chr9 40570986 40571248 -77291379 - L1MEc LINE L1 -4092 2218 1935 3387 59 32 0 chr9 40571366 40571804 -77290823 - L1PA8 LINE L1 -1 6171 5720 349 280 89 54 chr9 40571864 40572032 -77290595 - L1MEc LINE L1 -4579 1731 1558 1881 220 64 18 chr9 40572115 40572889 -77289738 + L1MA8 LINE L1 2926 7008 -702 6242 67 23 52 chr9 40572898 40574883 -77287744 + SVA Other Other 1 1386 0 3837 140 51 13 chr9 40574894 40575578 -77287049 + L1MA8 LINE L1 6991 7700 -10 824 163 0 15 chr9 40575683 40575818 -77286809 - FLAM_C SINE Alu 0 133 1 271 294 105 0 chr9 40575853 40575996 -77286631 - L1MEc LINE L1 -4935 1375 1218 999 228 55 94 chr9 40576003 40576398 -77286229 - L1MEc LINE L1 -4902 1217 851 1863 147 13 10 chr9 40576398 40576705 -77285922 - AluSx SINE Alu -4 308 1 999 228 55 94 chr9 40576705 40576892 -77285735 - L1MEc LINE L1 -5268 851 658 311 335 50 101 chr9 40577768 40578247 -77284380 + HAL1 LINE L1 814 1265 -1242 744 228 127 101 chr9 40578247 40578782 -77283845 + MLT1H LTR MaLR 1 549 0 311 335 50 101 chr9 40578782 40578827 -77283800 + HAL1 LINE L1 1265 1311 -1196 2668 182 15 35 chr9 40579792 40580394 -77282233 - MER68 LTR ERV1 0 605 1 247 261 29 127 chr9 40580394 40580575 -77282052 + HAL1b LINE L1 450 647 -701 2056 207 17 54 chr9 40580575 40581093 -77281534 - MLT1D LTR MaLR -2 503 5 2513 109 114 5 chr9 40581098 40581484 -77281143 - MSTA LTR MaLR 0 428 1 247 261 29 127 chr9 40581484 40581541 -77281086 + HAL1b LINE L1 651 670 -678 192 319 75 21 chr9 40582983 40583077 -77279550 + MIR SINE MIR 107 205 -57 622 270 47 82 chr9 40583245 40583564 -77279063 - MLT1K LTR MaLR -6 582 275 1658 229 78 37 chr9 40583657 40584146 -77278481 + MLT1J LTR MaLR 1 509 -2 502 199 66 22 chr9 40584480 40584616 -77278011 - MER103 DNA DNA -22 144 3 239 270 95 36 chr9 40585557 40585694 -77276933 + MIR3 SINE MIR 18 162 -46 465 187 99 0 chr9 40586929 40587020 -77275607 - MER103 DNA DNA -63 103 4 246 291 13 0 chr9 40587368 40587447 -77275180 + Charlie8 DNA MER1_type 11 90 -2327 652 255 130 0 chr9 40587802 40587963 -77274664 - MER5A DNA MER1_type 0 189 8 211 269 27 74 chr9 40587974 40588123 -77274504 - MIR SINE MIR -42 220 79 289 280 34 42 chr9 40588943 40589061 -77273566 - MIR SINE MIR -87 175 59 2384 101 49 3 chr9 40589252 40589599 -77273028 + THE1B LTR MaLR 2 364 0 2174 147 99 20 chr9 40589844 40590239 -77272388 - MSTB LTR MaLR 0 426 1 394 232 155 28 chr9 40590318 40590460 -77272167 - MIR SINE MIR -81 127 9 1859 193 28 100 chr9 40590551 40591090 -77271537 - MLT1D LTR MaLR -5 500 1 543 308 140 4 chr9 40591489 40591753 -77270874 + L2 LINE L2 2760 3055 -258 191 185 0 74 chr9 40592064 40592118 -77270509 + MIR SINE MIR 71 120 -88 493 268 179 0 chr9 40592797 40592965 -77269662 - MIR SINE MIR -14 248 51 206 272 74 37 chr9 40593081 40593162 -77269465 - MIR SINE MIR -88 174 91 1365 214 71 117 chr9 40593171 40593793 -77268834 - MLT1E LTR MaLR 0 593 1 498 267 114 62 chr9 40595069 40595662 -77266965 + L2 LINE L2 2450 3098 -174 447 262 89 62 chr9 40596506 40596651 -77265976 + MIR SINE MIR 18 174 -88 1558 174 7 21 chr9 40596651 40596967 -77265660 + AluJo SINE Alu 1 312 0 447 262 89 62 chr9 40596967 40597045 -77265582 + MIR SINE MIR 174 248 -14 199 272 163 55 chr9 40597135 40597337 -77265290 + L2 LINE L2 2054 2277 -1037 641 182 84 0 chr9 40597357 40597500 -77265127 + L1MD2 LINE L1 5884 6038 -321 5911 158 13 12 chr9 40597521 40597905 -77264722 - L1PB1 LINE L1 -1 6150 5768 333 0 0 0 chr9 40597905 40597942 -77264685 + (TG)n Simple_repeat Simple_repeat 2 38 0 5911 158 13 12 chr9 40597942 40599424 -77263203 - L1PB1 LINE L1 -383 5768 4280 2217 175 76 37 chr9 40599437 40599923 -77262704 - MLT1D LTR MaLR 0 505 1 1527 177 15 36 chr9 40599923 40600257 -77262370 + L1MD2 LINE L1 6032 6358 -1 749 101 39 62 chr9 40600264 40600289 -77262338 + FLAM_C SINE Alu 2 26 -286 2864 84 0 16 chr9 40600289 40600668 -77261959 + THE1C LTR MaLR 3 375 0 749 101 39 62 chr9 40600668 40600771 -77261856 + FLAM_C SINE Alu 26 127 -185 324 285 115 0 chr9 40602061 40602191 -77260436 + MIR SINE MIR 80 224 -38 429 291 103 96 chr9 40602404 40602802 -77259825 + L1ME LINE L1 5297 5697 -424 180 0 0 0 chr9 40603143 40603163 -77259464 + (CAG)n Simple_repeat Simple_repeat 2 21 0 366 309 86 6 chr9 40603169 40603331 -77259296 + L3 LINE CR1 1297 1471 -106 1961 167 22 50 chr9 40603424 40603764 -77258863 - MSTA LTR MaLR 0 428 153 423 0 0 0 chr9 40603764 40603811 -77258816 + (CTG)n Simple_repeat Simple_repeat 2 48 0 1961 167 22 50 chr9 40603811 40603960 -77258667 - MSTA LTR MaLR -275 153 1 384 188 0 27 chr9 40604015 40604127 -77258500 + GA-rich Low_complexity Low_complexity 3 111 0 229 291 0 0 chr9 40605251 40605306 -77257321 - MIR SINE MIR -56 206 152 294 192 0 90 chr9 40605437 40605515 -77257112 - MIR SINE MIR -108 154 84 189 0 0 0 chr9 40605986 40606007 -77256620 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 1643 166 58 4 chr9 40607269 40607546 -77255081 + AluJo SINE Alu 1 292 -20 1311 184 129 12 chr9 40608313 40608568 -77254059 - AluJo SINE Alu -16 296 12 520 298 62 11 chr9 40608928 40609106 -77253521 + MIR3 SINE MIR 19 205 -3 496 257 57 7 chr9 40609521 40609661 -77252966 - MIR SINE MIR -79 183 37 184 300 0 71 chr9 40609756 40609826 -77252801 + L2 LINE L2 3207 3271 -1 314 286 130 7 chr9 40610322 40610476 -77252151 - MIR3 SINE MIR -9 199 27 378 61 0 0 chr9 40611365 40611414 -77251213 + (TG)n Simple_repeat Simple_repeat 2 50 0 2082 136 24 0 chr9 40611569 40611908 -77250719 + MER7A DNA MER2_type 2 346 0 1450 180 243 17 chr9 40612585 40612997 -77249630 - MLT1D LTR MaLR 0 505 1 264 320 16 48 chr9 40613152 40613259 -77249368 - MIR SINE MIR -130 132 28 1979 163 59 10 chr9 40613259 40613414 -77249213 + MSTB LTR MaLR 1 147 -279 2308 103 3 0 chr9 40613414 40613714 -77248913 - AluSx SINE Alu -11 301 1 1979 163 59 10 chr9 40613714 40613964 -77248663 + MSTB LTR MaLR 147 426 0 264 320 16 48 chr9 40613964 40613981 -77248646 - MIR SINE MIR -234 28 12 195 216 0 0 chr9 40614003 40614040 -77248587 - MIR SINE MIR -115 147 111 862 240 93 5 chr9 40614162 40614453 -77248174 - L1ME1 LINE L1 0 6184 5859 1171 213 223 16 chr9 40614481 40614857 -77247770 - L1ME1 LINE L1 -4 6162 5709 * 1712 219 11 20 chr9 40614848 40615286 -77247341 - L1ME1 LINE L1 -2354 3792 3359 303 224 233 0 chr9 40615446 40615562 -77247065 + L1ME LINE L1 5683 5825 -296 646 179 57 7 chr9 40615666 40615806 -77246821 - MER45R DNA AcHobo -236 1345 1199 910 210 127 99 chr9 40615952 40616246 -77246381 - MER45R DNA AcHobo -1182 399 90 2282 121 0 0 chr9 40616246 40616543 -77246084 - AluSx SINE Alu -15 297 1 910 210 127 99 chr9 40616543 40616633 -77245994 - MER45R DNA AcHobo -1491 90 4 319 284 10 20 chr9 40616835 40616937 -77245690 + L2 LINE L2 3205 3305 -8 2866 201 19 13 chr9 40617347 40617965 -77244662 - L1MD3 LINE L1 0 7995 7374 469 338 7 0 chr9 40618361 40618500 -77244127 - MIR3 SINE MIR -34 174 35 429 257 9 9 chr9 40618931 40619044 -77243583 + L2 LINE L2 3160 3272 0 573 283 43 5 chr9 40619548 40619732 -77242895 - MIR SINE MIR -45 217 27 190 196 20 0 chr9 40620059 40620110 -77242517 - MIR SINE MIR -64 144 93 575 132 0 66 chr9 40620171 40620292 -77242335 + FLAM_A SINE Alu 29 141 -1 216 296 283 0 chr9 40620594 40620753 -77241874 + MIR SINE MIR 44 247 -15 296 270 20 20 chr9 40620883 40620983 -77241644 + MIR SINE MIR 24 123 -85 690 217 48 53 chr9 40621013 40621202 -77241425 - MIR SINE MIR -46 216 29 251 343 76 17 chr9 40621478 40621650 -77240977 + MIR3 SINE MIR 18 199 -9 1205 242 33 3 chr9 40622152 40622458 -77240169 + L1ME LINE L1 5508 5822 -348 262 246 18 0 chr9 40622584 40622641 -77239986 - Tigger7 DNA MER2_type -2247 240 183 1011 136 63 29 chr9 40622652 40622858 -77239769 - L1MA9 LINE L1 -209 6103 5891 1632 185 60 3 chr9 40622889 40623187 -77239440 + MER44D DNA MER2_type 1 315 -390 653 156 0 0 chr9 40623250 40623359 -77239268 - L1MA9 LINE L1 -422 5890 5782 1306 105 4 31 chr9 40623596 40623824 -77238803 - Tigger7 DNA MER2_type -26 2465 2244 451 333 7 0 chr9 40623856 40624003 -77238624 - L3 LINE CR1 -75 1502 1355 181 318 0 30 chr9 40624006 40624072 -77238555 - L3 LINE CR1 -1 1576 1513 207 293 26 78 chr9 40624203 40624319 -77238308 - MIR3 SINE MIR -14 194 85 383 348 39 21 chr9 40624788 40625021 -77237606 - MIR SINE MIR -6 256 20 249 33 0 0 chr9 40625134 40625164 -77237463 + (TC)n Simple_repeat Simple_repeat 2 31 0 756 184 14 104 chr9 40625171 40625383 -77237244 + MLT1A2 LTR MaLR 181 373 -1 1172 205 172 17 chr9 40625929 40626290 -77236337 - MLT1F LTR MaLR 0 542 126 6602 120 224 25 chr9 40626291 40627704 -77234923 + pTR5 LTR ERV1 743 2436 -2 586 162 7 78 chr9 40627705 40627847 -77234780 - MLT1F LTR MaLR -410 132 1 308 226 0 98 chr9 40627964 40628066 -77234561 - MLT1A2 LTR MaLR -110 264 173 775 254 46 42 chr9 40628097 40628337 -77234290 + MLT1D LTR MaLR 207 447 -58 2135 125 0 3 chr9 40628360 40628656 -77233971 - AluSx SINE Alu -12 300 6 234 210 48 0 chr9 40628665 40628727 -77233900 + MLT1D LTR MaLR 561 625 -1 259 268 99 0 chr9 40628909 40628980 -77233647 + MIR SINE MIR 34 111 -151 394 271 59 25 chr9 40628984 40629102 -77233525 - MER5B DNA MER1_type -7 171 50 213 329 24 35 chr9 40629123 40629208 -77233419 + MER5B DNA MER1_type 93 176 -2 266 308 56 9 chr9 40629212 40629319 -77233308 + MIR SINE MIR 107 218 -44 240 204 41 0 chr9 40629957 40630006 -77232621 - MER69 DNA AcHobo -3 2523 2473 403 270 46 20 chr9 40631593 40631745 -77230882 + MIR3 SINE MIR 50 205 -3 2020 120 49 0 chr9 40631797 40632081 -77230546 + AluSx SINE Alu 1 298 -14 1767 108 0 0 chr9 40632583 40632806 -77229821 + AluSx SINE Alu 1 223 -89 213 312 181 14 chr9 40632912 40633050 -77229577 + MIR SINE MIR 9 169 -93 694 288 68 51 chr9 40633140 40633553 -77229074 + MLT1J LTR MaLR 86 505 -6 2757 213 11 37 chr9 40633624 40634273 -77228354 + LTR27 LTR ERV1 1 634 -2 467 265 86 110 chr9 40634423 40634797 -77227830 + L2 LINE L2 2888 3252 -20 329 221 145 15 chr9 40635323 40635454 -77227173 - MIR3 SINE MIR -60 148 1 188 286 12 119 chr9 40635781 40635865 -77226762 + L2 LINE L2 2676 2750 -564 452 188 32 38 chr9 40635873 40636010 -77226617 + MLT1J LTR MaLR 292 476 -21 245 286 62 107 chr9 40636010 40636188 -77226439 - MER5B DNA MER1_type -8 170 1 757 167 0 8 chr9 40636330 40636456 -77226171 + FLAM_C SINE Alu 1 125 -8 1056 195 91 4 chr9 40636478 40636840 -77225787 - MLT1D LTR MaLR -83 422 1 666 301 21 46 chr9 40636872 40637154 -77225473 - Charlie8 DNA MER1_type -2141 276 2 254 308 88 38 chr9 40637634 40637793 -77224834 - LTR33A LTR ERVL -2 521 355 323 231 8 103 chr9 40637933 40638050 -77224577 + MIR SINE MIR 41 146 -62 2010 132 4 0 chr9 40638974 40639284 -77223343 + AluSx SINE Alu 1 311 0 218 54 0 27 chr9 40639378 40639415 -77223212 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 210 261 0 0 chr9 40639416 40639462 -77223165 - MER5B DNA MER1_type -131 47 2 488 272 193 17 chr9 40639490 40639791 -77222836 - L3 LINE CR1 -93 1484 1131 260 246 18 0 chr9 40640584 40640641 -77221986 - LTR67 LTR ERVL -386 171 114 25 0 0 0 chr9 40640911 40640936 -77221691 + AT_rich Low_complexity Low_complexity 1 25 0 200 256 70 12 chr9 40642161 40642247 -77220380 + MIR SINE MIR 63 153 -109 3805 56 24 0 chr9 40642647 40643148 -77219479 + LTR10D LTR ERV1 1 513 0 1613 171 27 20 chr9 40643186 40643478 -77219149 - AluJo SINE Alu -14 298 5 250 203 29 58 chr9 40643958 40644027 -77218600 - MIR3 SINE MIR -41 167 101 811 253 67 29 chr9 40644137 40644453 -77218174 - L2 LINE L2 -6 3307 2980 198 311 0 0 chr9 40644462 40644523 -77218104 + MIR3 SINE MIR 142 202 -6 1676 179 97 30 chr9 40646797 40647199 -77215428 + L1MB7 LINE L1 5734 6162 -22 2499 99 0 0 chr9 40647199 40647511 -77215116 - AluSx SINE Alu 0 312 1 239 333 48 0 chr9 40647595 40647679 -77214948 - L3 LINE CR1 -7 1570 1483 1458 130 0 52 chr9 40648081 40648311 -77214316 - AluJb SINE Alu -94 218 1 229 272 25 49 chr9 40648694 40648775 -77213852 + L3 LINE CR1 1492 1570 -7 282 116 0 0 chr9 40648852 40648895 -77213732 + (TTCA)n Simple_repeat Simple_repeat 3 45 0 1787 178 4 0 chr9 40648895 40649176 -77213451 - AluJb SINE Alu -30 282 1 238 272 76 82 chr9 40649315 40649473 -77213154 - MIR SINE MIR -5 257 101 197 246 92 0 chr9 40649831 40649896 -77212731 - L2 LINE L2 -63 3209 3139 1196 122 116 0 chr9 40650005 40650186 -77212441 - AluSg/x SINE Alu -9 303 102 1894 164 0 16 chr9 40650587 40650897 -77211730 - AluJo SINE Alu -7 305 1 551 294 65 54 chr9 40651254 40651530 -77211097 - L2 LINE L2 0 3313 3035 * 669 201 81 62 chr9 40651529 40651802 -77210825 - L2 LINE L2 -384 2930 2653 299 275 106 18 chr9 40651836 40652054 -77210573 - L2 LINE L2 -1230 2084 1848 530 317 24 6 chr9 40652268 40652435 -77210192 - MLT1J2 LTR MaLR -14 436 267 2460 76 3 7 chr9 40652453 40652757 -77209870 - AluSq SINE Alu -10 303 1 251 297 120 88 chr9 40652918 40653110 -77209517 - MLT1I LTR MaLR -147 262 65 209 237 189 68 chr9 40654745 40654935 -77207692 + L2 LINE L2 2847 3059 -213 528 272 20 20 chr9 40656182 40656329 -77206298 - MIR3 SINE MIR -46 162 16 304 244 140 46 chr9 40656544 40656762 -77205865 + MIR3 SINE MIR 2 242 -20 1879 141 0 56 chr9 40657028 40657348 -77205279 + AluJo SINE Alu 1 302 -10 462 212 27 62 chr9 40657586 40657732 -77204895 - MIR3 SINE MIR -9 199 59 445 335 97 11 chr9 40658259 40658435 -77204192 + L3 LINE CR1 1298 1488 -89 196 277 36 36 chr9 40658862 40658945 -77203682 + L2 LINE L2 3229 3311 -2 2557 63 0 3 chr9 40659097 40659397 -77203230 + AluY SINE Alu 1 299 -12 427 264 54 24 chr9 40659486 40659653 -77202974 + MLT1I LTR MaLR 225 396 -13 340 311 8 25 chr9 40661194 40661313 -77201314 - MIR3 SINE MIR 0 208 92 1562 190 65 49 chr9 40661462 40661952 -77200675 - MLT1D LTR MaLR 0 505 8 279 0 0 0 chr9 40662930 40662961 -77199666 + (CA)n Simple_repeat Simple_repeat 1 31 0 321 251 106 65 chr9 40663233 40663432 -77199195 - MIR3 SINE MIR 0 208 2 652 277 57 0 chr9 40664529 40664706 -77197921 - L3 LINE CR1 -93 1484 1298 189 0 0 0 chr9 40665391 40665412 -77197215 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 472 214 29 71 chr9 40665415 40665555 -77197072 - L1ME1 LINE L1 -18 6148 6015 1803 160 10 33 chr9 40665573 40665879 -77196748 - AluJo SINE Alu -13 299 1 27 73 0 0 chr9 40665882 40665937 -77196690 + AT_rich Low_complexity Low_complexity 1 55 0 252 265 303 32 chr9 40665996 40666181 -77196446 - MIR SINE MIR -21 241 7 440 238 230 0 chr9 40666228 40666354 -77196273 - MIR SINE MIR -74 188 34 2511 150 113 35 chr9 40666439 40666960 -77195667 - MER68 LTR ERV1 0 562 1 207 187 11 143 chr9 40667198 40667289 -77195338 + MIR SINE MIR 112 190 -72 375 78 0 0 chr9 40668738 40668789 -77193838 + (TCC)n Simple_repeat Simple_repeat 1 51 0 1815 143 4 4 chr9 40668789 40669054 -77193573 - AluJo SINE Alu -14 298 34 2264 74 3 18 chr9 40669448 40669754 -77192873 + AluY SINE Alu 1 302 0 201 318 76 0 chr9 40669792 40669858 -77192769 + MIR SINE MIR 76 146 -116 1799 164 31 3 chr9 40669909 40670202 -77192425 + AluJo SINE Alu 3 303 -9 332 316 105 7 chr9 40671048 40671200 -77191427 + MIR3 SINE MIR 13 179 -29 367 259 146 32 chr9 40672104 40672262 -77190365 + MER69A DNA AcHobo 1 176 -1 208 299 0 35 chr9 40672416 40672503 -77190124 + CT-rich Low_complexity Low_complexity 2 85 0 288 137 0 0 chr9 40673258 40673309 -77189318 + (CAG)n Simple_repeat Simple_repeat 1 51 0 250 255 105 33 chr9 40673491 40673644 -77188983 - MIR3 SINE MIR -21 187 24 21 0 0 0 chr9 40673682 40673703 -77188924 + AT_rich Low_complexity Low_complexity 1 21 0 243 188 16 31 chr9 40673948 40674012 -77188615 - L1MC4a LINE L1 -1875 5933 5871 273 263 66 40 chr9 40674020 40674172 -77188455 + MER104 DNA Tc2 25 180 0 225 222 0 19 chr9 40674241 40674295 -77188332 - L1M3 LINE L1 -444 5736 5684 489 250 77 65 chr9 40674953 40675305 -77187322 + L1ME4a LINE L1 5597 5952 -169 24 0 0 0 chr9 40675351 40675375 -77187252 + AT_rich Low_complexity Low_complexity 1 24 0 995 154 6 44 chr9 40675385 40675567 -77187060 - AluJo SINE Alu -40 272 98 303 272 11 22 chr9 40675673 40675765 -77186862 + L3 LINE CR1 1378 1468 -109 207 333 0 0 chr9 40676818 40676881 -77185746 + L3 LINE CR1 1307 1369 -208 269 289 76 37 chr9 40676963 40677260 -77185367 + L1MEc LINE L1 73 254 -5951 657 229 64 5 chr9 40677412 40677600 -77185027 + LTR50 LTR ERVL 441 639 -156 1896 166 0 10 chr9 40677625 40677927 -77184700 - AluJb SINE Alu -13 299 1 2385 112 0 0 chr9 40677932 40678244 -77184383 - AluSx SINE Alu 0 312 1 1258 197 69 31 chr9 40678275 40678565 -77184062 + AluJo SINE Alu 1 301 -11 1863 323 39 32 chr9 40678857 40680132 -77182495 + ERVL LTR ERVL 585 1941 -3823 273 274 95 0 chr9 40680198 40680282 -77182345 + ERVL LTR ERVL 2094 2185 -3469 2947 154 99 13 chr9 40680547 40681104 -77181523 - MER6A DNA MER2_type 0 605 1 278 408 113 10 chr9 40681226 40681643 -77180984 - L2 LINE L2 -5 3267 2808 815 189 0 0 chr9 40681824 40681956 -77180671 - FRAM SINE Alu -44 132 1 345 255 28 28 chr9 40682289 40682395 -77180232 - MIR SINE MIR -84 124 19 248 200 57 57 chr9 40682669 40682739 -77179888 + L2 LINE L2 3203 3272 0 4219 96 8 94 chr9 40683035 40683761 -77178866 - MER4A LTR ERV1 0 664 1 500 293 158 23 chr9 40684060 40684319 -77178308 + L3 LINE CR1 583 876 -701 189 161 0 0 chr9 40685024 40685055 -77177572 + L2 LINE L2 3262 3292 -21 * 672 284 85 20 chr9 40685050 40685251 -77177376 - MIR SINE MIR 0 262 49 719 163 0 16 chr9 40685574 40685697 -77176930 + MLT1B LTR MaLR 1 121 -269 781 279 109 23 chr9 40685769 40686116 -77176511 - MLT1J2 LTR MaLR -12 438 62 1030 212 33 4 chr9 40686300 40686545 -77176082 - MER68 LTR ERV1 -310 252 1 207 187 11 143 chr9 40686783 40686874 -77175753 + MIR SINE MIR 112 190 -72 2179 73 4 18 chr9 40688352 40688627 -77174000 - AluY SINE Alu -40 271 1 1832 190 0 13 chr9 40689049 40689359 -77173268 - AluJb SINE Alu -4 308 3 243 0 0 0 chr9 40689371 40689398 -77173229 + (T)n Simple_repeat Simple_repeat 1 27 0 2681 147 95 2 chr9 40689761 40690257 -77172370 - MER34 LTR ERV1 0 542 1 180 327 55 27 chr9 40690464 40690574 -77172053 + L2 LINE L2 3143 3255 -17 441 176 108 10 chr9 40741103 40741205 -77121422 + MSTB LTR MaLR 261 372 -54 565 189 155 11 chr9 40741223 40741377 -77121250 - MST-int LTR MaLR -963 661 463 * 6541 214 50 25 chr9 40741372 40742956 -77119671 + MSTB-int LTR MaLR 28 1651 0 420 232 10 0 chr9 40742956 40743055 -77119572 + MSTA LTR MaLR 1 100 -328 339 203 41 106 chr9 40743077 40743200 -77119427 + MSTA LTR MaLR 57 171 -257 1027 234 53 40 chr9 40743209 40743512 -77119115 + MSTA-int LTR MaLR 1345 1651 0 430 200 11 0 chr9 40743516 40743606 -77119021 + MSTA LTR MaLR 5 95 -333 249 163 23 0 chr9 40743719 40743762 -77118865 + THE1-int LTR MaLR 924 967 -613 * 702 226 201 21 chr9 40743753 40743992 -77118635 - THE1-int LTR MaLR -392 1188 907 980 233 87 7 chr9 40743996 40744284 -77118343 + MSTA LTR MaLR 66 376 -52 478 226 161 7 chr9 40744318 40744455 -77118172 - MST-int LTR MaLR -990 661 504 * 6292 217 56 30 chr9 40744450 40746033 -77116594 + MSTA-int LTR MaLR 28 1651 0 377 258 10 0 chr9 40746035 40746132 -77116495 + MSTA LTR MaLR 3 100 -328 349 262 107 0 chr9 40746177 40746280 -77116347 + MSTA LTR MaLR 58 171 -257 1102 257 0 35 chr9 40746292 40746607 -77116020 + MSTA-int LTR MaLR 1347 1650 -1 435 198 10 0 chr9 40746608 40746704 -77115923 + MSTA LTR MaLR 1 97 -331 2215 122 0 0 chr9 40746848 40747144 -77115483 + AluSc SINE Alu 1 296 -13 539 225 23 0 chr9 40747146 40747275 -77115352 - L1MA10 LINE L1 -4 6330 6199 694 252 83 42 chr9 40747283 40747852 -77114775 + L1M4 LINE L1 3767 4311 -1835 2435 64 3 0 chr9 40747852 40748147 -77114480 + AluY SINE Alu 1 296 -15 694 252 83 42 chr9 40748147 40748280 -77114347 + L1M4 LINE L1 4311 4437 -1709 2323 81 0 0 chr9 40748280 40748590 -77114037 + AluSq SINE Alu 5 314 0 694 252 83 42 chr9 40748590 40749054 -77113573 + L1M4 LINE L1 4437 5067 -1079 1438 205 179 3 chr9 40749054 40749395 -77113232 - MER57A LTR ERV1 0 403 3 694 252 83 42 chr9 40749395 40749535 -77113092 + L1M4 LINE L1 5067 5200 -946 820 174 8 0 chr9 40749537 40749669 -77112958 + FLAM_C SINE Alu 1 133 0 195 129 0 0 chr9 40749739 40749770 -77112857 + (TA)n Simple_repeat Simple_repeat 2 32 0 207 0 0 0 chr9 40749774 40749797 -77112830 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2230 95 0 11 chr9 40749800 40750085 -77112542 - AluSp SINE Alu -31 282 1 912 185 58 0 chr9 40750153 40750342 -77112285 + Charlie1 DNA MER1_type 875 1074 -1687 359 179 0 0 chr9 40750360 40750427 -77112200 - L1MA10 LINE L1 -3 6331 6265 1638 216 54 14 chr9 40751275 40751645 -77110982 + MSTA LTR MaLR 1 385 -43 1495 121 26 0 chr9 40751656 40751888 -77110739 + MSTA-int LTR MaLR 13 250 -1401 1211 184 37 12 chr9 40751885 40752130 -77110497 + MSTA-int LTR MaLR 1401 1651 0 * 1532 213 29 35 chr9 40752130 40752505 -77110122 + MSTA LTR MaLR 1 373 -55 459 238 154 0 chr9 40752533 40752676 -77109951 - MST-int LTR MaLR -981 670 506 452 228 0 0 chr9 40752674 40752775 -77109852 + MSTA-int LTR MaLR 29 129 -1522 * 1513 193 7 27 chr9 40753268 40753569 -77109058 + AluJo SINE Alu 2 296 -16 3045 203 58 44 chr9 40753682 40754793 -77107834 + L1MA5 LINE L1 4808 5946 -354 1146 232 27 8 chr9 40754794 40755053 -77107574 + AluJo SINE Alu 1 264 -48 1256 164 57 36 chr9 40755126 40755406 -77107221 + L1MA5 LINE L1 6009 6294 -6 739 285 114 36 chr9 40755442 40755815 -77106812 + MLT1G1 LTR MaLR 45 561 -34 2695 190 42 33 chr9 40757150 40758066 -77104561 + L1MB8 LINE L1 4766 5700 -478 2291 85 0 20 chr9 40758066 40758360 -77104267 - AluSg SINE Alu -22 288 1 2695 190 42 33 chr9 40758360 40758499 -77104128 + L1MB8 LINE L1 5700 5836 -342 2110 154 63 14 chr9 40758499 40758928 -77103699 + MER61C LTR ERV1 1 434 0 1151 224 72 9 chr9 40758928 40759249 -77103378 + L1MB8 LINE L1 5833 6173 -5 745 178 19 38 chr9 40759483 40759640 -77102987 + MER4E LTR ERV1 26 179 -600 320 261 246 14 chr9 40759770 40759985 -77102642 + L1MDa LINE L1 1568 1832 -4708 338 335 50 16 chr9 40760015 40760197 -77102430 + MIR SINE MIR 40 227 -35 2287 114 0 3 chr9 40760992 40761299 -77101328 + AluSx SINE Alu 1 306 -6 23 0 0 0 chr9 40761863 40761886 -77100741 + AT_rich Low_complexity Low_complexity 1 23 0 2235 106 7 7 chr9 40762115 40762417 -77100210 + AluSx SINE Alu 1 302 -10 24 53 0 0 chr9 40762471 40762509 -77100118 + AT_rich Low_complexity Low_complexity 1 38 0 1502 201 5 94 chr9 40762815 40763188 -77099439 + MLT1A1 LTR MaLR 26 365 0 328 311 77 22 chr9 40763398 40763581 -77099046 - MIR SINE MIR -33 229 37 2465 80 0 0 chr9 40766852 40767152 -77095475 + AluY SINE Alu 11 310 -1 201 375 0 0 chr9 40767407 40767503 -77095124 + (TG)n Simple_repeat Simple_repeat 1 96 0 1280 190 4 22 chr9 40767730 40767999 -77094628 + L1M2c LINE L1 2008 2271 -4518 1667 147 82 41 chr9 40768389 40768826 -77093801 + SN5 Other centromeric 1 455 0 183 204 0 0 chr9 40769071 40769120 -77093507 + (TG)n Simple_repeat Simple_repeat 2 50 0 244 231 13 26 chr9 40769618 40769696 -77092931 + HSAT5 Satellite Satellite 9 85 -1 279 211 0 28 chr9 40769885 40769956 -77092671 + HSAT5 Satellite Satellite 17 85 -1 281 279 0 12 chr9 40769997 40770083 -77092544 + HSAT5 Satellite Satellite 1 85 -1 654 220 47 0 chr9 40770632 40770782 -77091845 + L1MC4 LINE L1 6847 7003 -1039 904 197 41 9 chr9 40770825 40771043 -77091584 + L1MC4 LINE L1 7137 7361 -681 261 335 116 61 chr9 40771688 40772188 -77090439 - L2 LINE L2 -5 3267 2745 22 35 0 0 chr9 40772562 40772591 -77090036 + AT_rich Low_complexity Low_complexity 1 29 0 2303 107 0 0 chr9 40772866 40773164 -77089463 + AluSc SINE Alu 1 298 -11 23 68 0 0 chr9 40773254 40773298 -77089329 + AT_rich Low_complexity Low_complexity 1 44 0 276 288 12 0 chr9 40773331 40773411 -77089216 - L1PA16 LINE L1 -1 6165 6085 746 251 53 21 chr9 40773522 40773765 -77088862 + L1ME2 LINE L1 5811 6061 -103 1694 235 58 41 chr9 40773851 40774491 -77088136 + L1ME3 LINE L1 5197 5845 -317 200 246 254 15 chr9 40774497 40774631 -77087996 + L2 LINE L2 2744 2909 -405 236 185 0 77 chr9 40774820 40774885 -77087742 + L2 LINE L2 3158 3217 -96 2114 106 40 7 chr9 40774889 40775190 -77087437 - AluSq SINE Alu -1 312 2 314 311 135 29 chr9 40775518 40775762 -77086865 - L2 LINE L2 -36 3277 3008 1283 238 41 54 chr9 40775972 40776434 -77086193 + L1MDb LINE L1 822 1277 -5132 370 292 138 17 chr9 40776782 40777013 -77085614 - MER102a DNA MER1_type -1 329 71 198 0 0 0 chr9 40777899 40777921 -77084706 + (T)n Simple_repeat Simple_repeat 1 22 0 698 109 0 30 chr9 40777959 40778060 -77084567 - AluY SINE Alu -184 127 30 459 132 0 0 chr9 40778060 40778128 -77084499 - FRAM/FAM SINE Alu -107 68 1 236 336 53 38 chr9 40778141 40778272 -77084355 + MER5B DNA MER1_type 46 178 0 544 286 111 43 chr9 40779901 40780139 -77082488 + MIR SINE MIR 4 254 -8 1511 203 3 10 chr9 40780141 40780436 -77082191 - AluJo SINE Alu -19 293 1 22 70 0 0 chr9 40780441 40780484 -77082143 + AT_rich Low_complexity Low_complexity 1 43 0 241 273 13 78 chr9 40780533 40780687 -77081940 + MER104 DNA Tc2 34 177 -3 2070 122 0 0 chr9 40780841 40781155 -77081472 + AluSg SINE Alu 1 310 0 1799 102 33 0 chr9 40781723 40781968 -77080659 - AluSc SINE Alu -56 253 1 1940 146 0 0 chr9 40781969 40782275 -77080352 - AluSg SINE Alu 0 306 1 551 181 319 6 chr9 40783546 40783712 -77078915 + MER20 DNA MER1_type 2 219 0 22 0 0 0 chr9 40783786 40783808 -77078819 + AT_rich Low_complexity Low_complexity 1 22 0 1119 148 0 22 chr9 40783808 40783991 -77078636 - AluJb SINE Alu -7 305 127 321 269 80 34 chr9 40784153 40784328 -77078299 - L1MC4a LINE L1 -1767 6041 5859 306 0 0 0 chr9 40784370 40784404 -77078223 + (TA)n Simple_repeat Simple_repeat 2 35 0 1919 142 0 10 chr9 40784404 40784692 -77077935 - AluSx SINE Alu -27 285 1 941 176 113 57 chr9 40785041 40785336 -77077291 + MLT1E1 LTR MaLR 258 654 0 587 197 17 0 chr9 40785870 40785987 -77076640 + L1MB4 LINE L1 6047 6165 -15 5135 215 72 43 chr9 40786179 40787572 -77075055 + HERVL68 LTR ERVL 347 1780 -1257 1573 214 69 31 chr9 40787623 40787638 -77074989 + HERVL68 LTR ERVL 1941 1954 -1083 2320 71 14 14 chr9 40787638 40787935 -77074692 - AluY SINE Alu -14 297 1 1573 214 69 31 chr9 40787935 40788339 -77074288 + HERVL68 LTR ERVL 1954 2376 -661 786 221 69 22 chr9 40788339 40788570 -77074057 - MER31B LTR ERV1 0 466 225 309 194 16 0 chr9 40790510 40790572 -77072055 + MIR SINE MIR 111 173 -89 351 206 93 0 chr9 40790950 40791047 -77071580 - MIR SINE MIR -111 151 46 364 202 144 117 chr9 40791392 40791580 -77071047 - MER31B LTR ERV1 -244 222 30 42 0 0 0 chr9 40792448 40792490 -77070137 + AT_rich Low_complexity Low_complexity 1 42 0 583 212 42 17 chr9 40792667 40792785 -77069842 + FLAM_A SINE Alu 1 121 -21 27 29 0 0 chr9 40792968 40793002 -77069625 + AT_rich Low_complexity Low_complexity 1 34 0 181 83 56 0 chr9 40793084 40793120 -77069507 + GA-rich Low_complexity Low_complexity 5 42 0 34 42 0 0 chr9 40793186 40793234 -77069393 + AT_rich Low_complexity Low_complexity 1 48 0 45 19 0 0 chr9 40793286 40793338 -77069289 + AT_rich Low_complexity Low_complexity 1 52 0 29 60 0 0 chr9 40793401 40793451 -77069176 + AT_rich Low_complexity Low_complexity 1 50 0 1241 274 89 118 chr9 40793615 40794190 -77068437 - L2 LINE L2 -342 2972 2382 1693 170 32 0 chr9 40794190 40794472 -77068155 + AluJb SINE Alu 1 291 -21 1241 274 89 118 chr9 40794472 40794642 -77067985 - L2 LINE L2 -932 2382 2209 629 211 0 9 chr9 40794642 40794751 -77067876 + FLAM_C SINE Alu 2 109 -34 1241 274 89 118 chr9 40794751 40795155 -77067472 - L2 LINE L2 -1105 2209 1750 210 146 24 0 chr9 40795225 40795266 -77067361 - MIR SINE MIR -110 152 111 191 258 161 0 chr9 40795407 40795469 -77067158 - MIR SINE MIR -139 123 52 539 337 39 5 chr9 40796274 40796479 -77066148 - MIR SINE MIR -10 252 41 184 220 0 40 chr9 40797014 40797064 -77065563 - MIR SINE MIR -114 148 101 821 172 0 0 chr9 40797286 40797414 -77065213 + AluJb SINE Alu 141 268 -44 200 299 37 19 chr9 40797443 40797550 -77065077 - L2 LINE L2 -177 3095 2987 1845 181 0 13 chr9 40797760 40798074 -77064553 - AluJb SINE Alu 0 312 3 306 0 0 0 chr9 40798086 40798120 -77064507 + (T)n Simple_repeat Simple_repeat 1 34 0 2885 145 95 2 chr9 40798484 40798980 -77063647 - MER34 LTR ERV1 0 542 1 200 333 47 31 chr9 40799180 40799309 -77063318 + L2 LINE L2 3136 3266 -6 307 176 0 40 chr9 40800044 40800139 -77062488 + L1MC/D LINE L1 5374 5464 -705 * 4482 217 55 57 chr9 40800127 40802262 -77060365 - L1ME1 LINE L1 -38 6522 4438 1931 153 7 10 chr9 40802384 40803055 -77059572 + AluJb SINE Alu 6 675 0 252 191 16 16 chr9 40803055 40803118 -77059509 - L1ME1 LINE L1 -4948 1592 1530 898 176 80 0 chr9 40803173 40803360 -77059267 - L1MB4 LINE L1 -2 6178 5977 2458 106 11 34 chr9 40803364 40803743 -77058884 - THE1C LTR MaLR -5 370 1 3452 170 52 13 chr9 40803743 40804228 -77058399 - L1MB4 LINE L1 -197 5983 5450 258 32 0 0 chr9 40804228 40804259 -77058368 + (TC)n Simple_repeat Simple_repeat 2 32 0 3452 170 52 13 chr9 40804259 40804627 -77058000 - L1MB4 LINE L1 -730 5450 5098 1684 222 95 21 chr9 40804623 40805105 -77057522 - L1ME1 LINE L1 -5826 895 378 * 930 156 7 0 chr9 40805445 40805586 -77057041 - AluSg/x SINE Alu -17 295 154 365 117 54 18 chr9 40805723 40805834 -77056793 + (TCTA)n Simple_repeat Simple_repeat 2 116 0 252 339 69 62 chr9 40806400 40806674 -77055953 + L2 LINE L2 2977 3252 -20 302 287 98 42 chr9 40806865 40807008 -77055619 + L2 LINE L2 3122 3272 0 228 114 0 45 chr9 40807409 40807453 -77055174 - MIR SINE MIR -82 126 85 31 26 0 0 chr9 40807571 40807609 -77055018 + AT_rich Low_complexity Low_complexity 1 38 0 1662 169 8 0 chr9 40807609 40807875 -77054752 - L1PB3 LINE L1 -2 6152 5885 189 206 324 0 chr9 40808108 40808176 -77054451 - L2 LINE L2 0 3272 3183 233 316 13 0 chr9 40808305 40808384 -77054243 + L2 LINE L2 3188 3267 -5 278 214 168 15 chr9 40808837 40808968 -77053659 + MIR3 SINE MIR 36 186 -22 276 324 20 20 chr9 40809286 40809388 -77053239 + MIR SINE MIR 51 152 -56 794 139 15 0 chr9 40809486 40809623 -77053004 - L1 LINE L1 -1333 4813 4675 351 274 131 48 chr9 40809626 40809878 -77052749 + L2 LINE L2 2489 2761 -553 372 359 24 12 chr9 40810011 40810178 -77052449 + L2 LINE L2 2924 3092 -180 640 315 89 47 chr9 40810193 40810746 -77051881 - L1MEd LINE L1 -5262 1372 797 505 210 35 56 chr9 40810768 40810911 -77051716 - L1MEd LINE L1 -5920 622 483 2182 98 3 7 chr9 40811092 40811401 -77051226 + AluSx SINE Alu 1 308 0 22 0 0 0 chr9 40811464 40811486 -77051141 + AT_rich Low_complexity Low_complexity 1 22 0 693 248 32 50 chr9 40812686 40812968 -77049659 + LTR4 LTR ERV1 318 594 -2 972 146 0 7 chr9 40812968 40813119 -77049508 - AluSg SINE Alu -160 150 1 372 114 63 0 chr9 40813428 40813507 -77049120 + CT-rich Low_complexity Low_complexity 2 85 0 2104 134 20 0 chr9 40813533 40813839 -77048788 - AluSx SINE Alu 0 312 1 1511 176 3 30 chr9 40814257 40814552 -77048075 - AluJo SINE Alu -20 292 6 828 248 35 5 chr9 40814595 40814793 -77047834 + MIR SINE MIR 35 238 -24 230 329 47 0 chr9 40815027 40815112 -77047515 + MER91C DNA MER1_type 35 123 -17 2406 205 13 27 chr9 40815877 40816404 -77046223 + L1MB8 LINE L1 5653 6172 -6 21 0 0 0 chr9 40816935 40816956 -77045671 + AT_rich Low_complexity Low_complexity 1 21 0 364 298 99 0 chr9 40817473 40817614 -77045013 + L2 LINE L2 2722 2876 -438 2374 92 3 0 chr9 40821051 40821345 -77041282 - AluSp SINE Alu -16 297 3 2069 202 30 91 chr9 40822911 40823569 -77039058 + MER4D LTR ERV1 283 900 -3 3390 127 25 0 chr9 40823632 40824121 -77038506 + L1PA10 LINE L1 5657 6157 -11 2020 149 7 3 chr9 40824515 40824824 -77037803 - AluSq SINE Alu -3 310 1 901 199 0 161 chr9 40825634 40825895 -77036732 + MER58A DNA MER1_type 4 222 -2 602 307 136 37 chr9 40825980 40826196 -77036431 + MLT1L LTR MaLR 5 198 -417 2043 143 0 0 chr9 40826196 40826490 -77036137 + AluSc SINE Alu 1 294 -15 602 307 136 37 chr9 40826490 40826677 -77035950 + MLT1L LTR MaLR 198 448 -167 272 217 67 0 chr9 40826722 40826782 -77035845 + MLT1L LTR MaLR 546 609 -6 2919 213 121 39 chr9 40827601 40828334 -77034293 + Charlie1 DNA MER1_type 1605 2435 -326 1939 123 7 7 chr9 40828334 40828619 -77034008 + AluSx SINE Alu 1 285 -27 2919 213 121 39 chr9 40828619 40828835 -77033792 + Charlie1 DNA MER1_type 2435 2632 -129 322 226 177 0 chr9 40828836 40828960 -77033667 + L1M2 LINE L1 5296 5441 -856 1616 196 45 32 chr9 40828960 40829364 -77033263 - LTR52 LTR ERVL -3 418 10 484 263 103 5 chr9 40829371 40829565 -77033062 + L1ME LINE L1 5435 5647 -517 1097 222 13 4 chr9 40829690 40829920 -77032707 + Tigger2 DNA MER2_type 2487 2718 0 41 21 0 0 chr9 40830185 40830233 -77032394 + AT_rich Low_complexity Low_complexity 1 48 0 2295 104 0 0 chr9 40830267 40830564 -77032063 - AluSx SINE Alu -15 297 1 202 324 64 52 chr9 40830952 40831125 -77031502 + MIR SINE MIR 41 215 -47 252 143 82 0 chr9 40831727 40831825 -77030802 + (TA)n Simple_repeat Simple_repeat 1 106 0 209 91 15 45 chr9 40831833 40831899 -77030728 + (TAAAAA)n Simple_repeat Simple_repeat 6 69 0 242 123 0 74 chr9 40831899 40831980 -77030647 + (TATAA)n Simple_repeat Simple_repeat 1 75 0 474 263 22 7 chr9 40832209 40832346 -77030281 + L1MD1 LINE L1 3496 3634 -2512 378 0 0 0 chr9 40832346 40832388 -77030239 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 5013 247 61 25 chr9 40832780 40833084 -77029543 + L1MD1 LINE L1 3624 3916 -2326 1886 124 41 7 chr9 40833084 40833375 -77029252 + AluSx SINE Alu 2 302 -10 5013 247 61 25 chr9 40833375 40835594 -77027033 + L1MD1 LINE L1 3916 6234 -8 1632 193 16 86 chr9 40835592 40835977 -77026650 + L1MC5 LINE L1 6616 6960 -1001 * 1797 158 14 7 chr9 40835977 40836268 -77026359 + AluJo SINE Alu 1 293 -19 1632 193 16 86 chr9 40836268 40836380 -77026247 + L1MC5 LINE L1 6960 7078 -883 607 260 131 11 chr9 40836429 40836790 -77025837 + L2 LINE L2 2639 3044 -269 236 295 76 83 chr9 40836845 40836967 -77025660 - L2 LINE L2 -20 3252 3131 369 0 0 0 chr9 40836967 40837008 -77025619 + (CA)n Simple_repeat Simple_repeat 2 42 0 236 295 76 83 chr9 40837008 40837173 -77025454 - L2 LINE L2 -141 3131 2967 439 195 37 0 chr9 40837179 40837261 -77025366 + MLT1E2 LTR MaLR 106 190 -436 2248 229 111 36 chr9 40837281 40838593 -77024034 - L1ME LINE L1 -370 6030 4613 2296 228 34 29 chr9 40838639 40839381 -77023246 - L1ME LINE L1 -4517 1786 771 189 0 0 0 chr9 40839757 40839778 -77022849 + (TTTTA)n Simple_repeat Simple_repeat 3 23 0 1081 298 79 23 chr9 40839964 40840802 -77021825 - L2 LINE L2 -2 3311 2416 810 116 0 9 chr9 40840915 40841027 -77021600 - AluSg/x SINE Alu -30 282 172 1594 173 75 16 chr9 40841030 40841348 -77021279 - L1MA9 LINE L1 -157 6155 5819 819 111 0 9 chr9 40841348 40841456 -77021171 + AluSg/x SINE Alu 195 301 -11 1891 149 29 16 chr9 40841481 40841789 -77020838 + AluSx SINE Alu 1 312 0 425 281 18 9 chr9 40841971 40842085 -77020542 + MIR SINE MIR 32 146 -116 1616 189 207 3 chr9 40842096 40842131 -77020496 - LTR46 LTR ERV1 0 460 433 495 0 0 0 chr9 40842131 40842186 -77020441 + (CA)n Simple_repeat Simple_repeat 2 56 0 1616 189 207 3 chr9 40842186 40842532 -77020095 - LTR46 LTR ERV1 -27 433 1 421 301 127 12 chr9 40842574 40842833 -77019794 - L2 LINE L2 -24 3289 3001 426 178 12 24 chr9 40847332 40847498 -77015129 + HSAT5 Satellite Satellite 1 164 -3 248 286 0 12 chr9 40847573 40847689 -77014938 + HSAT5 Satellite Satellite 1 114 -1 329 232 0 12 chr9 40847735 40847817 -77014810 + HSAT5 Satellite Satellite 3 83 -3 229 203 58 29 chr9 40847893 40847962 -77014665 + HSAT5 Satellite Satellite 1 71 -15 293 211 14 21 chr9 40848063 40848158 -77014469 + HSAT5 Satellite Satellite 1 94 -20 * 527 224 42 33 chr9 40848136 40848312 -77014315 - MSTA LTR MaLR -130 296 127 655 252 178 21 chr9 40848359 40848601 -77014026 + MST-int LTR MaLR 977 1256 -395 281 179 18 0 chr9 40848589 40848645 -77013982 - THE1-int LTR MaLR -613 967 911 * 2417 143 68 9 chr9 40848829 40849268 -77013359 + L1P LINE L1 4781 5245 -901 840 313 62 6 chr9 40849301 40849637 -77012990 - HERVL-D LTR ERVL -5296 358 4 1164 167 34 38 chr9 40849688 40849914 -77012713 - MLT2D LTR ERVL -151 263 39 279 126 89 0 chr9 40849914 40849966 -77012661 - MLT2D LTR ERVL 0 414 367 1175 276 68 56 chr9 40850074 40850559 -77012068 - MLT2B3 LTR ERVL -63 491 1 476 296 6 6 chr9 40850603 40850782 -77011845 - L1ME LINE L1 -3595 2620 2442 1204 269 58 118 chr9 40850819 40852036 -77010591 - L1ME LINE L1 -4140 2256 1113 2590 59 0 0 chr9 40852087 40852391 -77010236 - AluY SINE Alu -7 304 1 21 0 0 0 chr9 40852401 40852422 -77010205 + AT_rich Low_complexity Low_complexity 1 21 0 251 257 114 70 chr9 40852425 40852728 -77009899 - L1ME LINE L1 -5247 958 623 1709 262 74 58 chr9 40852983 40853782 -77008845 + MER21B LTR ERV1 1 812 -51 319 293 55 44 chr9 40853882 40854063 -77008564 - L1ME LINE L1 -6101 295 113 1480 251 43 39 chr9 40855668 40855848 -77006779 - L1 LINE L1 -3202 2944 2766 2285 100 0 7 chr9 40855848 40856147 -77006480 - AluSg SINE Alu -13 297 1 1480 251 43 39 chr9 40856147 40856518 -77006109 - L1 LINE L1 -3380 2766 2383 793 135 16 0 chr9 41056728 41056854 -76805773 - FLAM_C SINE Alu 0 143 16 1931 133 20 0 chr9 41056885 41057179 -76805448 - AluSx SINE Alu -12 300 1 2651 23 0 0 chr9 41057427 41057730 -76804897 + AluY SINE Alu 3 305 -6 869 166 0 6 chr9 41057822 41057985 -76804642 - AluSc SINE Alu -15 294 133 22 35 0 0 chr9 41058696 41058725 -76803902 + GC_rich Low_complexity Low_complexity 1 29 0 2088 99 7 0 chr9 41059649 41059932 -76802695 - AluSg SINE Alu -21 289 5 1997 115 3 10 chr9 41060140 41060444 -76802183 - AluSx SINE Alu -9 303 2 811 167 100 0 chr9 41060445 41060595 -76802032 - FRAM SINE Alu -1 165 1 2145 98 0 0 chr9 41062205 41062500 -76800127 - AluSg1 SINE Alu -14 295 1 2230 98 0 3 chr9 41062823 41063128 -76799499 - AluY SINE Alu -7 304 1 1966 97 15 0 chr9 41063128 41063397 -76799230 - AluSq SINE Alu -17 296 24 2131 95 0 48 chr9 41063504 41063651 -76798976 + AluSx SINE Alu 1 127 -185 2423 57 0 3 chr9 41063651 41063951 -76798676 + AluY SINE Alu 1 299 -12 2131 95 0 48 chr9 41063951 41064119 -76798508 + AluSx SINE Alu 127 301 -11 2392 71 0 3 chr9 41064119 41064427 -76798200 + AluY SINE Alu 1 307 -4 1824 153 27 0 chr9 41064627 41064922 -76797705 + AluSx SINE Alu 2 304 -8 185 333 40 20 chr9 41064966 41065065 -76797562 + MIR SINE MIR 37 137 -71 330 342 18 0 chr9 41065073 41065184 -76797443 - L1MC4 LINE L1 -100 7942 7830 1208 169 138 4 chr9 41065215 41065475 -76797152 + AluJo SINE Alu 1 295 -17 2156 97 3 26 chr9 41065475 41065783 -76796844 + AluSp SINE Alu 1 301 -12 1662 164 33 13 chr9 41065950 41066249 -76796378 - AluJb SINE Alu -7 305 1 1929 116 46 0 chr9 41066336 41066620 -76796007 + AluSx SINE Alu 1 297 -15 2106 101 14 0 chr9 41066638 41066924 -76795703 + AluSc SINE Alu 7 296 -13 818 154 0 29 chr9 41067093 41067229 -76795398 + FRAM SINE Alu 19 150 -26 1723 170 13 3 chr9 41067240 41067574 -76795053 + AluJb SINE Alu 1 312 0 5133 111 26 51 chr9 41067574 41067658 -76794969 + L1MA4A LINE L1 5361 5446 -857 1946 104 7 37 chr9 41067658 41067796 -76794831 + AluSx SINE Alu 6 147 -165 2287 75 3 0 chr9 41067796 41068091 -76794536 + AluY SINE Alu 1 296 -15 1946 104 7 37 chr9 41068091 41068250 -76794377 + AluSx SINE Alu 147 294 -18 5133 111 26 51 chr9 41068250 41068350 -76794277 + L1MA4A LINE L1 5446 5547 -756 2303 100 3 0 chr9 41068350 41068659 -76793968 + AluSp SINE Alu 1 310 -3 5133 111 26 51 chr9 41068659 41068760 -76793867 + L1MA4A LINE L1 5547 5649 -654 1947 143 3 0 chr9 41068760 41069060 -76793567 + AluSq SINE Alu 1 301 -12 5133 111 26 51 chr9 41069060 41069729 -76792898 + L1MA4A LINE L1 5649 6293 -10 2150 122 0 0 chr9 41069731 41070042 -76792585 - AluSx SINE Alu -1 311 1 1826 166 3 0 chr9 41070045 41070341 -76792286 - AluSx SINE Alu -15 297 1 24 32 0 0 chr9 41070341 41070372 -76792255 + AT_rich Low_complexity Low_complexity 1 31 0 35 41 0 0 chr9 41070471 41070520 -76792107 + AT_rich Low_complexity Low_complexity 1 49 0 2061 57 4 4 chr9 41071099 41071362 -76791265 + AluSp SINE Alu 1 263 -50 494 113 0 0 chr9 41071362 41071433 -76791194 + AluSp/q SINE Alu 229 299 -14 1661 142 45 3 chr9 41071434 41071723 -76790904 + AluJo SINE Alu 1 301 -11 324 107 36 0 chr9 41073481 41073583 -76789044 + Alu SINE Alu 225 328 0 342 273 55 9 chr9 41073600 41073710 -76788917 - MIR SINE MIR -40 222 108 249 33 0 0 chr9 41074602 41074632 -76787995 + (A)n Simple_repeat Simple_repeat 1 30 0 423 100 17 0 chr9 41074881 41074941 -76787686 + AluJo SINE Alu 39 99 -213 1077 155 0 84 chr9 41074986 41075173 -76787454 + AluJo SINE Alu 99 265 -47 2174 113 3 0 chr9 41075173 41075475 -76787152 - AluSx SINE Alu -9 303 1 1077 155 0 84 chr9 41075475 41075513 -76787114 + AluJo SINE Alu 265 305 -7 1981 135 10 0 chr9 41075516 41075813 -76786814 + AluSx SINE Alu 6 305 -7 336 295 173 0 chr9 41075844 41075983 -76786644 + MIR SINE MIR 94 256 -6 180 219 0 0 chr9 41075954 41075995 -76786632 + L2 LINE L2 3273 3313 0 * 267 330 11 0 chr9 41076071 41076162 -76786465 - MIR SINE MIR -68 140 49 865 225 0 0 chr9 41076310 41076488 -76786139 - AluJb SINE Alu -6 306 129 1998 133 10 3 chr9 41076507 41076807 -76785820 + AluJb SINE Alu 2 303 -9 191 380 16 16 chr9 41076818 41076939 -76785688 - L2 LINE L2 -7 3306 3186 * 207 235 88 15 chr9 41076908 41076976 -76785651 - L2 LINE L2 0 3272 3200 185 284 170 50 chr9 41077021 41077162 -76785465 - L2 LINE L2 -172 3100 2943 2110 82 0 7 chr9 41077194 41077473 -76785154 + AluSx SINE Alu 35 311 -1 281 370 69 14 chr9 41077481 41077770 -76784857 - L2 LINE L2 -456 2858 2554 310 321 71 63 chr9 41078103 41078579 -76784048 - L2 LINE L2 -7 3306 2827 1607 185 28 0 chr9 41078665 41078951 -76783676 - AluJb SINE Alu -18 294 1 473 189 24 39 chr9 41078994 41079121 -76783506 - L1MB3 LINE L1 0 6183 6059 2131 110 0 10 chr9 41079122 41079422 -76783205 - AluSg SINE Alu -13 297 1 877 135 15 0 chr9 41079449 41079582 -76783045 - FRAM SINE Alu -22 154 20 2130 125 0 0 chr9 41079791 41080088 -76782539 - AluSg SINE Alu -13 297 1 334 330 19 9 chr9 41080092 41080198 -76782429 - MIR3 SINE MIR -101 107 1 2049 123 0 10 chr9 41080447 41080768 -76781859 - AluSq SINE Alu 0 313 1 1696 138 8 0 chr9 41080768 41081036 -76781591 - AluSx SINE Alu -8 304 35 433 154 0 0 chr9 41081157 41081222 -76781405 + AluSp/q SINE Alu 223 287 -26 2224 82 0 3 chr9 41081234 41081525 -76781102 + AluSq SINE Alu 1 290 -23 256 172 31 31 chr9 41081541 41081605 -76781022 + A-rich Low_complexity Low_complexity 1 64 0 2362 77 0 0 chr9 41081613 41081913 -76780714 + AluSc SINE Alu 2 301 -8 2233 105 0 3 chr9 41082223 41082529 -76780098 - AluSx SINE Alu -7 305 1 2322 78 3 3 chr9 41083364 41083673 -76778954 - AluSc SINE Alu 0 309 1 1505 131 113 22 chr9 41083674 41083948 -76778679 - AluSx SINE Alu -13 299 1 641 193 8 0 chr9 41084117 41084236 -76778391 - FLAM_A SINE Alu -4 138 19 1581 197 151 28 chr9 41084321 41084525 -76778102 + LTR2B LTR ERV1 7 185 -305 186 43 0 0 chr9 41084525 41084548 -76778079 + (TCCTG)n Simple_repeat Simple_repeat 2 24 0 1581 197 151 28 chr9 41084548 41084774 -76777853 + LTR2B LTR ERV1 185 490 0 2030 110 7 10 chr9 41085165 41085473 -76777154 - AluSx SINE Alu 0 312 6 1235 154 20 142 chr9 41086818 41086990 -76775637 - AluJo SINE Alu 0 302 191 1582 149 4 15 chr9 41086990 41087149 -76775478 - AluSq SINE Alu -20 293 137 2268 66 0 13 chr9 41087149 41087451 -76775176 - AluY SINE Alu -13 298 1 1582 149 4 15 chr9 41087451 41087553 -76775074 - AluSq SINE Alu -176 137 35 1235 154 20 142 chr9 41087553 41087724 -76774903 - AluJo SINE Alu -111 191 1 22 35 0 0 chr9 41089435 41089464 -76773163 + AT_rich Low_complexity Low_complexity 1 29 0 1475 179 7 14 chr9 41089500 41089809 -76772818 - AluJb SINE Alu 0 307 1 986 122 0 0 chr9 41089834 41089973 -76772654 - AluSq SINE Alu -29 284 146 524 284 61 61 chr9 41090026 41090389 -76772238 + Charlie8 DNA MER1_type 19 381 -2036 247 328 0 0 chr9 41090395 41090462 -76772165 + Charlie8 DNA MER1_type 1356 1422 -995 273 267 0 0 chr9 41090882 41090942 -76771685 - MIR SINE MIR -122 140 81 2233 116 0 0 chr9 41091724 41092034 -76770593 - AluSx SINE Alu -2 310 1 986 98 0 0 chr9 41092036 41092169 -76770458 - AluSq/x SINE Alu -179 133 1 2356 82 0 9 chr9 41092502 41092818 -76769809 - AluSq SINE Alu 0 313 1 2117 106 0 0 chr9 41093073 41093356 -76769271 + AluSq SINE Alu 1 283 -30 2323 75 0 13 chr9 41093357 41093665 -76768962 + AluY SINE Alu 1 304 -7 23 0 0 0 chr9 41093680 41093703 -76768924 + AT_rich Low_complexity Low_complexity 1 23 0 914 192 30 30 chr9 41093879 41094108 -76768519 - AluJo SINE Alu 0 310 82 683 182 50 0 chr9 41094126 41094247 -76768380 - FLAM_C SINE Alu -5 128 2 841 207 12 12 chr9 41094272 41094398 -76768229 + AluJb SINE Alu 2 130 -182 2250 101 0 3 chr9 41094398 41094706 -76767921 + AluSc SINE Alu 1 307 -2 841 207 12 12 chr9 41094706 41094748 -76767879 + AluJb SINE Alu 129 170 -142 1069 122 0 0 chr9 41094940 41095096 -76767531 - AluJb SINE Alu -24 288 133 346 306 66 0 chr9 41095338 41095459 -76767168 + L2 LINE L2 3182 3310 -3 2739 84 40 13 chr9 41095547 41095992 -76766635 + LTR21A LTR ERV1 1 490 -15 2863 97 156 97 chr9 41095992 41096030 -76766597 + HERVFH21 LTR ERV1 5 39 -6490 183 42 0 0 chr9 41096030 41096054 -76766573 + (CTCA)n Simple_repeat Simple_repeat 2 25 0 2863 97 156 97 chr9 41096054 41096474 -76766153 + HERVFH21 LTR ERV1 39 511 -6018 2525 47 0 0 chr9 41096474 41096773 -76765854 - AluY SINE Alu -12 299 1 2863 97 156 97 chr9 41096773 41096930 -76765697 + HERVFH21 LTR ERV1 511 657 -5872 1814 194 71 49 chr9 41096947 41097139 -76765488 + LTR2B LTR ERV1 32 218 -272 2377 64 0 0 chr9 41097139 41097434 -76765193 + AluY SINE Alu 1 295 -16 1814 194 71 49 chr9 41097434 41097690 -76764937 + LTR2B LTR ERV1 218 490 0 9043 157 6 26 chr9 41097690 41099388 -76763239 + HERVFH21 LTR ERV1 652 2314 -4215 4260 92 19 3 chr9 41099368 41099985 -76762642 + HERVFH21 LTR ERV1 3075 3701 -2828 * 1467 93 0 0 chr9 41100011 41100204 -76762423 - AluSx SINE Alu -119 193 1 2171 83 0 0 chr9 41100204 41100505 -76762122 + HERVFH21 LTR ERV1 3685 3985 -2544 7986 144 13 8 chr9 41100665 41102104 -76760523 + HERVFH21 LTR ERV1 5344 6529 0 2727 94 47 7 chr9 41102104 41102551 -76760076 + LTR21A LTR ERV1 1 497 -8 1802 173 116 31 chr9 41102814 41103237 -76759390 + LTR2B LTR ERV1 32 490 0 1979 115 3 14 chr9 41103238 41103533 -76759094 - AluSx SINE Alu -20 292 1 2359 87 3 0 chr9 41103547 41103859 -76758768 - AluSp SINE Alu 0 313 1 2050 122 0 0 chr9 41103859 41104154 -76758473 - AluSx SINE Alu -16 296 2 2215 101 3 0 chr9 41105420 41105718 -76756909 + AluSq SINE Alu 1 299 -14 2381 73 0 3 chr9 41105740 41106042 -76756585 + AluY SINE Alu 1 301 -10 2351 87 0 3 chr9 41106545 41106854 -76755773 + AluY SINE Alu 1 308 -3 2207 107 0 0 chr9 41107256 41107556 -76755071 + AluSp SINE Alu 2 301 -12 270 336 56 8 chr9 41107902 41108027 -76754600 + MER34 LTR ERV1 352 482 -60 555 219 18 0 chr9 41108027 41108141 -76754486 - FLAM_C SINE Alu -8 135 20 553 119 0 30 chr9 41108625 41108726 -76753901 + MER4A LTR ERV1 1 98 -566 * 1267 148 53 74 chr9 41108722 41109079 -76753548 + MER4A LTR ERV1 257 664 0 1333 144 40 107 chr9 41110354 41110680 -76751947 - AluJo SINE Alu -8 304 1 2314 99 0 3 chr9 41112128 41112441 -76750186 - AluSq SINE Alu -1 312 1 1587 189 10 7 chr9 41112490 41112792 -76749835 - AluJb SINE Alu -3 309 7 479 262 94 71 chr9 41112826 41113199 -76749428 + Charlie8 DNA MER1_type 11 381 -2036 2190 91 0 26 chr9 41114177 41114484 -76748143 + AluSc SINE Alu 1 299 -10 180 354 0 0 chr9 41114494 41114542 -76748085 + MER5B DNA MER1_type 63 110 -68 2164 92 0 10 chr9 41115736 41116031 -76746596 - AluSg SINE Alu -14 296 5 206 180 0 40 chr9 41117545 41117595 -76745032 + G-rich Low_complexity Low_complexity 1 48 0 24 53 0 0 chr9 41117683 41117721 -76744906 + GC_rich Low_complexity Low_complexity 1 38 0 1949 108 87 0 chr9 41120463 41120750 -76741877 - AluSx SINE Alu 0 312 1 1696 168 3 23 chr9 41120752 41121062 -76741565 - AluJo SINE Alu -8 304 1 224 276 153 10 chr9 41121133 41121231 -76741396 - L2 LINE L2 -17 3255 3144 2082 100 45 0 chr9 41121337 41121628 -76740999 - AluSx SINE Alu -8 304 1 319 343 90 60 chr9 41121664 41122153 -76740474 - L2 LINE L2 -2 3270 2771 335 319 37 7 chr9 41122479 41122621 -76740006 - MIR SINE MIR -65 143 21 2247 99 0 0 chr9 41122886 41123180 -76739447 - AluSx SINE Alu -17 295 2 2150 92 3 0 chr9 41123188 41123503 -76739124 - AluSp SINE Alu 0 316 1 581 328 39 27 chr9 41123512 41123768 -76738859 + L2 LINE L2 2992 3250 -22 183 275 22 163 chr9 41123801 41123870 -76738757 + MIR3 SINE MIR 56 86 -122 1723 163 3 3 chr9 41123870 41124153 -76738474 - AluJb SINE Alu -29 283 1 183 275 22 163 chr9 41124153 41124261 -76738366 + MIR3 SINE MIR 86 208 0 222 278 40 66 chr9 41124739 41124890 -76737737 + L2 LINE L2 2857 3003 -310 1026 151 13 0 chr9 41124909 41125068 -76737559 - FRAM SINE Alu -16 160 1 2053 123 3 0 chr9 41125079 41125364 -76737263 - AluSx SINE Alu -26 286 1 2165 109 6 3 chr9 41125827 41126138 -76736489 - AluSx SINE Alu 0 312 1 1727 150 3 26 chr9 41126831 41127137 -76735490 - AluJo SINE Alu -13 299 1 417 335 94 28 chr9 41127490 41127777 -76734850 + L2 LINE L2 2919 3224 -48 2150 122 0 0 chr9 41127777 41128073 -76734554 + AluSx SINE Alu 2 297 -15 2214 114 0 0 chr9 41128319 41128616 -76734011 - AluSx SINE Alu -15 297 1 197 363 99 20 chr9 41128704 41128996 -76733631 - L2 LINE L2 -431 2883 2569 2386 100 0 0 chr9 41129181 41129492 -76733135 + AluSx SINE Alu 1 311 -1 1721 138 0 62 chr9 41129582 41129729 -76732898 + AluSq SINE Alu 1 123 -190 2386 77 0 0 chr9 41129729 41130026 -76732601 + AluSg SINE Alu 1 297 -13 1721 138 0 62 chr9 41130026 41130169 -76732458 + AluSq SINE Alu 123 273 -40 238 286 211 32 chr9 41130605 41130790 -76731837 - MIR SINE MIR -36 226 9 2209 104 0 10 chr9 41131303 41131610 -76731017 + AluSx SINE Alu 1 304 -8 2111 130 0 0 chr9 41131698 41131999 -76730628 - AluSx SINE Alu -11 301 1 602 281 30 4 chr9 41132207 41132505 -76730122 + MER87 LTR ERV1 209 541 0 244 257 0 124 chr9 41132517 41132630 -76729997 + L2 LINE L2 3085 3183 -89 508 361 23 18 chr9 41132717 41132936 -76729691 + MIR SINE MIR 28 247 -15 278 311 137 31 chr9 41133514 41133675 -76728952 - MIR SINE MIR -70 192 15 1504 166 41 51 chr9 41134124 41134250 -76728377 + AluJo SINE Alu 1 127 -185 1743 189 0 0 chr9 41134250 41134547 -76728080 - AluJo SINE Alu -15 297 1 1504 166 41 51 chr9 41134547 41134715 -76727912 + AluJo SINE Alu 127 292 -20 347 390 0 0 chr9 41134733 41134851 -76727776 + L1ME LINE L1 5701 5818 -303 327 318 58 76 chr9 41134866 41135089 -76727538 - MIR SINE MIR -11 251 33 2098 141 3 3 chr9 41135097 41135409 -76727218 - AluSx SINE Alu 0 312 1 1565 164 9 97 chr9 41135425 41135755 -76726872 - AluJo SINE Alu 0 302 2 2391 82 3 0 chr9 41135791 41136094 -76726533 + AluSq SINE Alu 1 304 -9 2468 64 0 10 chr9 41136096 41136410 -76726217 + AluY SINE Alu 1 311 0 421 172 44 1 chr9 41136414 41136516 -76726111 + L1MB3 LINE L1 5725 5829 -354 787 169 0 0 chr9 41136517 41136635 -76725992 + FLAM_C SINE Alu 1 118 -15 2013 112 0 58 chr9 41136641 41136816 -76725811 - AluSx SINE Alu -17 295 144 2519 39 7 3 chr9 41136816 41137126 -76725501 - AluY SINE Alu 0 311 1 2013 112 0 58 chr9 41137126 41137263 -76725364 - AluSx SINE Alu -168 144 1 2471 39 19 19 chr9 41137715 41138026 -76724601 - AluY SINE Alu 0 311 1 2302 103 0 0 chr9 41138026 41138326 -76724301 - AluSx SINE Alu -11 301 1 1486 180 36 20 chr9 41138402 41138708 -76723919 - AluJo SINE Alu -1 311 1 205 258 34 22 chr9 41138712 41138801 -76723826 - MIR SINE MIR -66 142 53 1967 128 10 16 chr9 41139265 41139569 -76723058 - AluSx SINE Alu -10 302 1 1390 152 12 32 chr9 41139572 41139822 -76722805 - AluJo SINE Alu -6 306 62 1016 129 34 0 chr9 41139822 41139969 -76722658 - AluSq/x SINE Alu -161 152 1 274 184 138 23 chr9 41140348 41140435 -76722192 - MER117 DNA MER1_type -55 142 46 211 302 60 43 chr9 41140526 41140642 -76721985 - MIR SINE MIR -26 236 119 565 179 6 31 chr9 41140644 41140806 -76721821 + CT-rich Low_complexity Low_complexity 4 161 0 329 259 59 15 chr9 41141043 41141178 -76721449 + L1MC5 LINE L1 7785 7925 -36 1955 143 0 16 chr9 41141188 41141496 -76721131 + AluSx SINE Alu 1 303 -9 2235 107 0 3 chr9 41141538 41141837 -76720790 - AluSq SINE Alu -15 298 1 2572 43 0 0 chr9 41141881 41142185 -76720442 - AluY SINE Alu -7 304 1 1840 139 31 7 chr9 41142256 41142543 -76720084 - AluJo SINE Alu -18 294 1 2212 118 0 3 chr9 41142701 41143007 -76719620 - AluSp SINE Alu -8 305 1 21 36 0 0 chr9 41143011 41143039 -76719588 + AT_rich Low_complexity Low_complexity 1 28 0 1800 142 0 77 chr9 41143156 41143282 -76719345 + AluJo SINE Alu 2 136 -176 2109 85 53 0 chr9 41143282 41143564 -76719063 - AluSq SINE Alu -16 297 1 1800 142 0 77 chr9 41143564 41143774 -76718853 + AluJo SINE Alu 136 312 0 743 194 0 8 chr9 41143783 41143912 -76718715 + FLAM_A SINE Alu 1 128 -5 2238 85 0 0 chr9 41143915 41144249 -76718378 + AluSx SINE Alu 1 334 0 1947 109 0 85 chr9 41144252 41144566 -76718061 + AluSx SINE Alu 1 285 -27 699 99 0 0 chr9 41144566 41144667 -76717960 + (TA)n Simple_repeat Simple_repeat 2 102 0 1947 109 0 85 chr9 41144667 41144692 -76717935 + AluSx SINE Alu 285 311 -1 239 308 86 26 chr9 41144703 41144820 -76717807 - MIR SINE MIR -108 154 31 1789 169 3 10 chr9 41145412 41145714 -76716913 - AluJo SINE Alu -12 300 1 800 201 26 0 chr9 41145891 41146045 -76716582 - FRAM SINE Alu -8 158 1 1160 101 48 0 chr9 41146071 41146239 -76716388 - AluSg SINE Alu -95 215 40 504 135 14 0 chr9 41146294 41146368 -76716259 - AluS SINE Alu -238 75 1 1494 167 40 63 chr9 41146370 41146553 -76716074 - AluJb SINE Alu -16 296 121 2181 104 3 7 chr9 41146553 41146852 -76715775 + AluSx SINE Alu 1 298 -14 1494 167 40 63 chr9 41146852 41146967 -76715660 - AluJb SINE Alu -191 121 5 2357 61 3 0 chr9 41146973 41147268 -76715359 - AluY SINE Alu -15 296 1 229 118 0 0 chr9 41147319 41147353 -76715274 - Alu SINE Alu -269 34 1 24 0 0 0 chr9 41147362 41147386 -76715241 + AT_rich Low_complexity Low_complexity 1 24 0 1754 169 0 22 chr9 41147386 41147705 -76714922 + AluJo SINE Alu 1 312 0 1892 135 0 60 chr9 41148462 41148780 -76713847 - AluJo SINE Alu -9 303 5 937 106 8 0 chr9 41148875 41149007 -76713620 + AluSq/x SINE Alu 3 135 -178 2240 104 0 0 chr9 41149007 41149305 -76713322 + AluSq SINE Alu 1 298 -15 320 287 152 0 chr9 41149722 41149886 -76712741 + MIR SINE MIR 51 239 -23 2153 113 0 7 chr9 41150423 41150724 -76711903 - AluSx SINE Alu -13 299 1 2167 90 10 0 chr9 41150758 41151091 -76711536 + AluY SINE Alu 3 338 0 1832 168 3 10 chr9 41151151 41151460 -76711167 + AluJo SINE Alu 1 307 -5 2265 50 43 0 chr9 41151494 41151776 -76710851 + AluY SINE Alu 2 295 -16 2226 92 7 3 chr9 41151785 41152091 -76710536 + AluSx SINE Alu 1 307 -5 381 331 0 24 chr9 41152396 41152523 -76710104 + MIR SINE MIR 8 131 -131 852 246 22 0 chr9 41152523 41152706 -76709921 + AluJb SINE Alu 115 301 -11 224 229 16 16 chr9 41152707 41152768 -76709859 + MIR SINE MIR 154 214 -48 201 250 0 0 chr9 41152833 41152881 -76709746 + (TATATG)n Simple_repeat Simple_repeat 3 50 0 2135 115 7 3 chr9 41152911 41153216 -76709411 - AluSx SINE Alu -6 306 1 598 179 0 0 chr9 41153255 41153350 -76709277 - AluJb SINE Alu -84 228 134 1810 95 0 8 chr9 41153350 41153592 -76709035 - AluSx SINE Alu -14 298 59 1951 221 25 41 chr9 41153657 41154088 -76708539 - MER74B LTR ERVL 0 622 186 2250 102 0 3 chr9 41154088 41154392 -76708235 - AluSx SINE Alu -9 303 1 1954 139 0 0 chr9 41154395 41154683 -76707944 - AluSx SINE Alu -24 288 1 1951 221 25 41 chr9 41154683 41154807 -76707820 - MER74B LTR ERVL -438 184 72 1036 189 0 0 chr9 41155440 41155609 -76707018 - AluJb SINE Alu -10 302 134 2103 97 33 10 chr9 41155609 41155909 -76706718 - AluSx SINE Alu -5 307 1 347 313 125 14 chr9 41155914 41156122 -76706505 + L2 LINE L2 2310 2540 -774 1165 135 0 0 chr9 41156122 41156292 -76706335 - FRAM SINE Alu -10 166 1 2011 127 0 39 chr9 41156319 41156626 -76706001 + AluSx SINE Alu 1 295 -17 2016 102 11 7 chr9 41156626 41156932 -76705695 + AluSx SINE Alu 1 308 0 1086 163 99 10 chr9 41156944 41157146 -76705481 + AluJo SINE Alu 1 220 -92 249 163 0 23 chr9 41157129 41157172 -76705455 + Alu SINE Alu 69 110 -192 * 1425 76 0 0 chr9 41157170 41157343 -76705284 - AluY SINE Alu -8 303 133 1109 175 0 0 chr9 41157377 41157543 -76705084 + FRAM SINE Alu 1 166 0 287 278 156 20 chr9 41157545 41157799 -76704828 + L2 LINE L2 2741 3029 -243 27 73 0 0 chr9 41157811 41157866 -76704761 + AT_rich Low_complexity Low_complexity 1 55 0 1020 104 15 0 chr9 41157912 41158047 -76704580 - AluSq SINE Alu -12 301 165 514 137 0 0 chr9 41158047 41158120 -76704507 - AluSq SINE Alu -239 73 1 1723 140 52 65 chr9 41158505 41158813 -76703814 + AluJo SINE Alu 1 304 -8 2212 80 12 86 chr9 41158815 41159151 -76703476 + AluY SINE Alu 1 311 0 386 156 26 0 chr9 41159153 41159230 -76703397 + G-rich Low_complexity Low_complexity 5 83 0 293 115 0 19 chr9 41159219 41159271 -76703356 + (GGAA)n Simple_repeat Simple_repeat 1 51 0 * 2338 78 4 0 chr9 41159411 41159729 -76702898 - AluSx SINE Alu 0 319 1 2189 120 3 7 chr9 41159730 41160039 -76702588 - AluSx SINE Alu -4 308 1 253 309 74 0 chr9 41161050 41161131 -76701496 + L2 LINE L2 3136 3222 -50 341 43 0 0 chr9 41161171 41161218 -76701409 + U7 snRNA snRNA 2 48 -15 25 0 0 0 chr9 41161237 41161262 -76701365 + AT_rich Low_complexity Low_complexity 1 25 0 1602 149 0 0 chr9 41161308 41161543 -76701084 + AluJo SINE Alu 70 304 -8 1255 206 29 19 chr9 41161738 41162054 -76700573 + L2 LINE L2 2575 2893 -421 558 168 9 18 chr9 41162056 41162169 -76700458 - AluJo/FRAM SINE Alu 0 312 201 2269 116 0 10 chr9 41162171 41162482 -76700145 + AluSq SINE Alu 1 308 -5 384 200 7 12 chr9 41162490 41162612 -76700015 - AluJ/FLAM SINE Alu -223 79 21 2242 97 23 0 chr9 41162995 41163169 -76699458 - AluSq SINE Alu -7 306 121 374 0 22 0 chr9 41163169 41163215 -76699412 + (TG)n Simple_repeat Simple_repeat 2 48 0 2242 97 23 0 chr9 41163215 41163339 -76699288 - AluSq SINE Alu -192 121 1 1860 164 7 0 chr9 41163350 41163642 -76698985 - AluJo SINE Alu -18 294 1 1675 158 49 18 chr9 41164124 41164409 -76698218 + AluJo SINE Alu 1 294 -18 2182 105 40 0 chr9 41164410 41164706 -76697921 + AluSq SINE Alu 1 308 -5 237 277 0 15 chr9 41164814 41164879 -76697748 + LTR67 LTR ERVL 490 553 -4 2592 71 3 0 chr9 41165623 41165933 -76696694 - AluY SINE Alu 0 311 1 201 133 0 0 chr9 41165952 41165982 -76696645 + (TCCCC)n Simple_repeat Simple_repeat 1 30 0 2327 104 10 0 chr9 41165988 41166295 -76696332 - AluSg SINE Alu 0 310 1 460 170 37 15 chr9 41166297 41166432 -76696195 + CT-rich Low_complexity Low_complexity 3 140 0 1627 166 30 4 chr9 41166443 41166708 -76695919 - AluJb SINE Alu -5 307 36 1546 144 84 40 chr9 41166781 41167079 -76695548 - AluJo SINE Alu -1 311 1 466 260 39 11 chr9 41167237 41167413 -76695214 + MIR SINE MIR 20 196 -65 2388 97 0 3 chr9 41167416 41167716 -76694911 + AluSq SINE Alu 1 299 -14 381 154 110 0 chr9 41167717 41167808 -76694819 + MER113 DNA MER1_type? 1 101 -420 1911 133 32 39 chr9 41168025 41168083 -76694544 + AluJb SINE Alu 2 59 -253 2288 71 3 3 chr9 41168083 41168365 -76694262 - AluY SINE Alu -14 297 16 1911 133 32 39 chr9 41168365 41168615 -76694012 + AluJb SINE Alu 59 308 -4 2036 126 0 43 chr9 41169178 41169504 -76693123 + AluSq SINE Alu 1 312 -1 221 258 194 24 chr9 41170773 41170897 -76691730 - MIR3 SINE MIR -61 147 3 2069 138 3 7 chr9 41170897 41171201 -76691426 - AluSx SINE Alu -9 303 1 313 211 26 0 chr9 41171868 41171944 -76690683 + L1ME4a LINE L1 5750 5827 -1981 608 180 7 65 chr9 41172087 41172226 -76690401 + FLAM_C SINE Alu 1 131 -2 3590 159 22 112 chr9 41172228 41172328 -76690299 + L1MB7 LINE L1 5217 5324 -860 1909 149 20 10 chr9 41172328 41172629 -76689998 - AluJb SINE Alu -6 306 3 3590 159 22 112 chr9 41172629 41172650 -76689977 + L1MB7 LINE L1 5324 5345 -839 591 80 0 116 chr9 41172650 41172728 -76689899 - HY3 scRNA scRNA -2 99 36 2292 103 0 3 chr9 41172728 41173020 -76689607 + AluSx SINE Alu 1 291 -21 591 80 0 116 chr9 41173020 41173053 -76689574 - HY3 scRNA scRNA -65 36 1 3590 159 22 112 chr9 41173053 41173332 -76689295 + L1MB7 LINE L1 5345 5648 -536 1869 157 26 3 chr9 41173332 41173637 -76688990 - AluJb SINE Alu 0 312 1 3590 159 22 112 chr9 41173637 41173665 -76688962 + L1MB7 LINE L1 5648 5677 -507 2090 136 14 0 chr9 41173665 41173960 -76688667 + AluSx SINE Alu 1 299 -13 3590 159 22 112 chr9 41173960 41174200 -76688427 + L1MB7 LINE L1 5677 5937 -247 2310 98 0 0 chr9 41174200 41174487 -76688140 + AluSx SINE Alu 11 297 -15 3590 159 22 112 chr9 41174487 41174775 -76687852 + L1MB7 LINE L1 5937 6106 -78 2070 128 0 10 chr9 41174775 41175063 -76687564 - AluJb SINE Alu -14 298 14 3590 159 22 112 chr9 41175063 41175121 -76687506 + L1MB7 LINE L1 6106 6168 -16 387 248 223 6 chr9 41175129 41175286 -76687341 + L1ME4a LINE L1 5928 6118 -3 2294 116 0 0 chr9 41175289 41175590 -76687037 + AluSx SINE Alu 6 306 -6 2286 94 9 31 chr9 41175592 41175911 -76686716 + AluSp SINE Alu 1 312 -1 1713 168 0 21 chr9 41175915 41176201 -76686426 + AluJo SINE Alu 1 280 -32 198 0 0 0 chr9 41176208 41176230 -76686397 + (CAAA)n Simple_repeat Simple_repeat 4 25 0 2648 53 0 0 chr9 41176616 41176918 -76685709 - AluY SINE Alu -9 302 1 2293 114 10 0 chr9 41177017 41177324 -76685303 + AluSx SINE Alu 1 310 -2 5080 183 30 14 chr9 41277521 41279311 -76583316 - L1PB3 LINE L1 -61 6093 4280 282 29 0 0 chr9 41279488 41279523 -76583104 + (TG)n Simple_repeat Simple_repeat 2 36 0 222 220 17 0 chr9 41279523 41279582 -76583045 + CT-rich Low_complexity Low_complexity 2 61 0 1765 254 64 75 chr9 41279583 41280896 -76581731 + SST1 Satellite centromeric 262 1560 -3 423 0 0 0 chr9 41280902 41280949 -76581678 + (TG)n Simple_repeat Simple_repeat 2 48 0 240 220 17 0 chr9 41280949 41281008 -76581619 + CT-rich Low_complexity Low_complexity 2 61 0 1206 279 36 51 chr9 41281747 41282656 -76579971 - SST1 Satellite centromeric -13 895 1 402 74 0 0 chr9 41282775 41282829 -76579798 + (TTCA)n Simple_repeat Simple_repeat 4 57 0 1092 155 0 4 chr9 41284633 41285354 -76577273 + (TGAG)n Simple_repeat Simple_repeat 1 717 0 267 276 117 47 chr9 41285558 41285772 -76576855 + MIR SINE MIR 10 238 -24 187 263 111 51 chr9 41285877 41286094 -76576533 + L2 LINE L2 2836 3065 -248 270 293 75 38 chr9 41287036 41287142 -76575485 + L2 LINE L2 3162 3271 -1 597 197 104 67 chr9 41287576 41287769 -76574858 - MER63A DNA MER1_type -10 200 1 320 324 6 22 chr9 41287916 41288098 -76574529 + (CA)n Simple_repeat Simple_repeat 2 180 0 28 0 0 0 chr9 41288363 41288391 -76574236 + AT_rich Low_complexity Low_complexity 1 28 0 1118 231 47 27 chr9 41288490 41288789 -76573838 - LTR68 LTR ERV1 -127 613 309 291 159 48 16 chr9 41288976 41289039 -76573588 - LTR68 LTR ERV1 -653 87 23 550 221 0 0 chr9 41289039 41289143 -76573484 + FRAM SINE Alu 63 166 -10 22 80 0 0 chr9 41289569 41289619 -76573008 + AT_rich Low_complexity Low_complexity 1 50 0 2676 158 5 2 chr9 41290347 41290747 -76571880 + MER61D LTR ERV1 1 401 -100 1013 175 64 126 chr9 41290747 41291252 -76571375 + HUERS-P3b LTR ERV1 195 886 -2600 * 11205 186 38 54 chr9 41291251 41291879 -76570748 + HUERS-P3b LTR ERV1 609 1246 -5750 2414 64 3 49 chr9 41291879 41292205 -76570422 + AluY SINE Alu 1 311 0 11205 186 38 54 chr9 41292205 41293656 -76568971 + HUERS-P3b LTR ERV1 1246 2719 -4277 2212 142 27 33 chr9 41293656 41294022 -76568605 + THE1B LTR MaLR 1 364 0 11205 186 38 54 chr9 41294022 41296483 -76566144 + HUERS-P3b LTR ERV1 2719 6724 -272 180 0 0 0 chr9 41296483 41296503 -76566124 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 11205 186 38 54 chr9 41296503 41296771 -76565856 + HUERS-P3b LTR ERV1 6724 6995 -1 2860 169 34 28 chr9 41296772 41297091 -76565536 + MER61D LTR ERV1 1 326 -175 1974 134 3 7 chr9 41297091 41297382 -76565245 + AluSg SINE Alu 2 291 -19 2860 169 34 28 chr9 41297382 41297559 -76565068 + MER61D LTR ERV1 326 500 -1 914 195 19 123 chr9 41297936 41298244 -76564383 + MER93b LTR ERV1 98 373 0 1924 169 55 19 chr9 41298244 41298481 -76564146 + MER1B DNA MER1_type 1 255 -2457 2075 230 35 62 chr9 41298481 41299050 -76563577 - MLT2B3 LTR ERVL 0 554 1 1924 169 55 19 chr9 41299050 41299137 -76563490 + MER1B DNA MER1_type 255 337 -2 25 0 0 0 chr9 41299858 41299883 -76562744 + AT_rich Low_complexity Low_complexity 1 25 0 2731 198 23 45 chr9 41300842 41301462 -76561165 - L1MA6 LINE L1 -1 6299 5694 363 71 14 29 chr9 41301951 41302021 -76560606 + (TA)n Simple_repeat Simple_repeat 2 70 0 1628 203 3 3 chr9 41302060 41302366 -76560261 + AluJb SINE Alu 1 306 -6 507 292 40 32 chr9 41302850 41303127 -76559500 + L1ME3 LINE L1 5884 6162 0 25 65 0 0 chr9 41303174 41303220 -76559407 + AT_rich Low_complexity Low_complexity 1 46 0 349 297 115 33 chr9 41303684 41303866 -76558761 - MLT1J LTR MaLR -279 232 36 231 305 147 46 chr9 41305587 41305872 -76556755 - MLT1J2 LTR MaLR 0 450 137 4236 167 75 42 chr9 41306638 41307512 -76555115 - MER4D LTR ERV1 0 903 1 807 304 47 23 chr9 41307519 41307861 -76554766 + LTR16B LTR ERVL 109 458 -6 2660 152 39 0 chr9 41308163 41308577 -76554050 + MER57B LTR ERV1 1 430 -4 223 333 28 0 chr9 41308873 41308945 -76553682 + L2 LINE L2 3193 3266 -47 221 258 0 0 chr9 41310305 41310367 -76552260 + A-rich Low_complexity Low_complexity 1 62 0 1036 251 78 49 chr9 41310667 41311078 -76551549 - L1MC4 LINE L1 -321 7721 7299 1065 264 31 36 chr9 41311141 41311557 -76551070 - L1MC4 LINE L1 -733 7309 6896 561 295 94 22 chr9 41311558 41311877 -76550750 - L1M4 LINE L1 -1768 4378 4037 382 285 19 19 chr9 41311887 41312143 -76550484 + L1MEc LINE L1 2034 2289 -4107 247 322 123 15 chr9 41312252 41312513 -76550114 + L1MEc LINE L1 93 381 -6015 1935 152 66 20 chr9 41312516 41312864 -76549763 + THE1B LTR MaLR 1 364 0 2028 170 11 16 chr9 41313130 41313507 -76549120 + THE1C LTR MaLR 1 375 0 1210 273 84 43 chr9 41313900 41315130 -76547497 - L1M4 LINE L1 -2598 3548 2269 30 27 0 0 chr9 41315156 41315193 -76547434 + AT_rich Low_complexity Low_complexity 1 37 0 527 262 20 15 chr9 41315195 41315397 -76547230 - L1MEc LINE L1 -1488 4727 4525 334 285 66 15 chr9 41315476 41315613 -76547014 - L1MEc LINE L1 -2115 4100 3957 14491 30 0 0 chr9 41315619 41318070 -76544557 + L1PA3 LINE L1 3705 6155 0 703 264 76 28 chr9 41318086 41318650 -76543977 - L1MEc LINE L1 -2435 3780 3190 25 0 0 0 chr9 41318711 41318736 -76543891 + AT_rich Low_complexity Low_complexity 1 25 0 1034 230 59 67 chr9 41318737 41319097 -76543530 - MLT1A1 LTR MaLR -47 332 1 513 204 91 8 chr9 41319208 41319340 -76543287 - L1MA3 LINE L1 0 6305 6163 389 248 96 99 chr9 41319357 41319910 -76542717 - L1MEc LINE L1 -3720 2501 1985 379 279 22 89 chr9 41320034 41320213 -76542414 + MER96 DNA MER1_type? 1 167 -8 * 392 247 27 96 chr9 41320074 41320220 -76542407 - MER96 DNA MER1_type? -38 137 2 23 0 0 0 chr9 41320306 41320329 -76542298 + AT_rich Low_complexity Low_complexity 1 23 0 315 229 36 84 chr9 41320330 41320496 -76542131 - HAL1 LINE L1 -961 1546 1389 529 300 52 17 chr9 41320610 41320916 -76541711 - L1MEc LINE L1 -4982 1223 933 758 329 26 23 chr9 41320957 41321346 -76541281 - L1MEc LINE L1 -5596 800 411 563 193 122 9 chr9 41321382 41321624 -76541003 - MLT1A1 LTR MaLR 0 390 1 1369 198 63 30 chr9 41321971 41322304 -76540323 + MER2 DNA MER2_type 1 344 0 1000 271 80 6 chr9 41323912 41324251 -76538376 - MLT1A1 LTR MaLR -1 364 1 25 0 0 0 chr9 41324628 41324653 -76537974 + AT_rich Low_complexity Low_complexity 1 25 0 2475 73 0 16 chr9 41325924 41326240 -76536387 - AluY SINE Alu 0 311 1 4480 78 23 0 chr9 41326518 41327117 -76535510 + L1PA7 LINE L1 5506 6118 -36 1734 59 18 0 chr9 41327117 41327332 -76535295 + L1PA8 LINE L1 5948 6172 0 254 335 71 37 chr9 41327350 41327675 -76534952 + L1MEd LINE L1 586 921 -5284 200 339 79 6 chr9 41328052 41328217 -76534410 + L2 LINE L2 3083 3259 -54 379 341 76 22 chr9 41328299 41328666 -76533961 + L1MEd LINE L1 1436 1822 -4574 1288 246 48 132 chr9 41328716 41329367 -76533260 - MER77 LTR ERV1 -6 599 4 1448 261 48 52 chr9 41330776 41331444 -76531183 + L1M4 LINE L1 3573 4237 -1909 282 283 33 0 chr9 41331458 41331550 -76531077 + GA-rich Low_complexity Low_complexity 6 100 0 211 205 0 0 chr9 41331845 41331884 -76530743 + (CA)n Simple_repeat Simple_repeat 2 40 0 421 246 18 42 chr9 41331889 41332056 -76530571 - L1M4 LINE L1 -2383 3763 3601 * 3694 45 0 0 chr9 41332043 41332490 -76530137 - L1P LINE L1 -2143 4003 3557 6815 18 0 0 chr9 41332490 41333253 -76529374 + L1PA2 LINE L1 5389 6151 -4 654 265 106 45 chr9 41333288 41333584 -76529043 - L1M4 LINE L1 -2519 3627 3350 2130 136 0 0 chr9 41333584 41333892 -76528735 - AluSx SINE Alu -4 308 1 654 265 106 45 chr9 41333892 41334236 -76528391 - L1M4 LINE L1 -2796 3350 2948 50 31 0 0 chr9 41334620 41334684 -76527943 + AT_rich Low_complexity Low_complexity 1 64 0 25 31 0 0 chr9 41335323 41335355 -76527272 + AT_rich Low_complexity Low_complexity 1 32 0 22 56 0 0 chr9 41335705 41335741 -76526886 + AT_rich Low_complexity Low_complexity 1 36 0 834 295 65 14 chr9 41336284 41336445 -76526182 - SST1 Satellite centromeric -1129 434 283 342 0 0 0 chr9 41336445 41336483 -76526144 + (CCCCAG)n Simple_repeat Simple_repeat 2 39 0 834 295 65 14 chr9 41336483 41336734 -76525893 - SST1 Satellite centromeric -1280 283 1 233 226 16 0 chr9 41337470 41337532 -76525095 + GA-rich Low_complexity Low_complexity 1 63 0 210 91 0 0 chr9 41337532 41337565 -76525062 + (CA)n Simple_repeat Simple_repeat 2 34 0 716 279 61 44 chr9 41337591 41338065 -76524562 - SST1 Satellite centromeric -14 1549 1068 26 74 0 0 chr9 41338578 41338632 -76523995 + AT_rich Low_complexity Low_complexity 1 54 0 393 22 0 0 chr9 41341677 41341723 -76520904 + (TG)n Simple_repeat Simple_repeat 1 46 0 21 57 0 0 chr9 41342746 41342781 -76519846 + AT_rich Low_complexity Low_complexity 1 35 0 258 32 0 0 chr9 41342873 41342904 -76519723 + (CA)n Simple_repeat Simple_repeat 1 31 0 225 207 0 35 chr9 41344373 41344431 -76518196 + G-rich Low_complexity Low_complexity 3 58 0 902 200 0 0 chr9 41345069 41345224 -76517403 - FRAM SINE Alu -11 165 11 333 0 0 0 chr9 41345586 41345623 -76517004 + (GA)n Simple_repeat Simple_repeat 2 38 0 254 194 16 0 chr9 41347935 41347997 -76514630 + GA-rich Low_complexity Low_complexity 2 64 0 1023 243 100 12 chr9 41348241 41348661 -76513966 - MLT1C LTR MaLR -10 457 1 2077 223 55 12 chr9 41351968 41352546 -76510081 - LTR26 LTR ERV1 0 603 1 222 301 23 38 chr9 41353734 41353867 -76508760 + (CCCA)n Simple_repeat Simple_repeat 2 132 0 204 313 27 9 chr9 41354052 41354164 -76508463 + (TCTA)n Simple_repeat Simple_repeat 2 115 0 * 436 291 11 22 chr9 41354104 41354283 -76508344 + (TCCA)n Simple_repeat Simple_repeat 2 178 0 412 289 176 17 chr9 41354367 41354724 -76507903 - L2 LINE L2 0 3313 2900 187 357 30 30 chr9 41355317 41355485 -76507142 + MIR SINE MIR 23 190 -72 511 306 122 6 chr9 41355526 41356033 -76506594 + MER92B LTR ERV1 4 569 -67 1759 135 29 22 chr9 41356447 41356789 -76505838 - MER4A LTR ERV1 0 664 262 616 117 43 0 chr9 41356790 41356884 -76505743 - MER4A LTR ERV1 -566 98 1 1230 153 23 23 chr9 41357574 41357790 -76504837 + AluJo SINE Alu 85 300 -12 227 59 0 0 chr9 41357799 41357833 -76504794 - Tigger2 DNA MER2_type -235 2483 2450 203 279 0 64 chr9 41358537 41358677 -76503950 + CT-rich Low_complexity Low_complexity 3 133 0 216 296 0 69 chr9 41359108 41359297 -76503330 + C-rich Low_complexity Low_complexity 2 177 0 29 0 0 0 chr9 41360177 41360206 -76502421 + AT_rich Low_complexity Low_complexity 1 29 0 410 293 86 0 chr9 41360576 41360716 -76501911 - MIR SINE MIR -106 156 5 373 291 182 0 chr9 41360717 41360882 -76501745 - MIR SINE MIR -3 259 65 941 248 146 34 chr9 41360995 41361357 -76501270 + L1ME LINE L1 4755 5075 -1089 1505 192 0 11 chr9 41361357 41361643 -76500984 + AluJb SINE Alu 30 312 0 941 248 146 34 chr9 41361643 41362011 -76500616 + L1ME LINE L1 5075 5566 -598 460 208 0 9 chr9 41362026 41362132 -76500495 - MLT1C LTR MaLR -329 138 34 1435 140 163 23 chr9 41362148 41362405 -76500222 - AluJo SINE Alu -9 293 1 3786 98 45 63 chr9 41362819 41363465 -76499162 + MER51A LTR ERV1 1 634 0 729 238 6 98 chr9 41363542 41363857 -76498770 + MLT1A2 LTR MaLR 4 289 -85 394 259 9 0 chr9 41363857 41363973 -76498654 + MLT1A2 LTR MaLR 258 374 0 2434 107 59 0 chr9 41364691 41365045 -76497582 + THE1C LTR MaLR 1 375 0 1363 200 13 13 chr9 41365613 41365918 -76496709 - LOR1a LTR ERV1 -5 492 188 293 253 27 0 chr9 41365921 41365996 -76496631 + G-rich Low_complexity Low_complexity 3 79 0 290 210 37 25 chr9 41366136 41366217 -76496410 + GA-rich Low_complexity Low_complexity 4 85 0 574 166 17 39 chr9 41366237 41366418 -76496209 + GA-rich Low_complexity Low_complexity 4 180 0 289 113 0 48 chr9 41366422 41366484 -76496143 + (GGGA)n Simple_repeat Simple_repeat 1 59 0 253 116 87 0 chr9 41366988 41367057 -76495570 + (CA)n Simple_repeat Simple_repeat 2 76 0 561 166 29 23 chr9 41367161 41367336 -76495291 + (TGGA)n Simple_repeat Simple_repeat 3 178 0 934 110 29 0 chr9 41367365 41367538 -76495089 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 696 137 22 44 chr9 41367549 41367732 -76494895 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 550 160 15 0 chr9 41367748 41367879 -76494748 + (TGGA)n Simple_repeat Simple_repeat 3 135 0 22 0 0 0 chr9 41368818 41368840 -76493787 + AT_rich Low_complexity Low_complexity 1 22 0 1751 149 0 4 chr9 41368924 41369214 -76493413 + AluSx SINE Alu 35 312 0 22 35 0 0 chr9 41370195 41370224 -76492403 + AT_rich Low_complexity Low_complexity 1 29 0 2571 133 24 5 chr9 41371313 41371733 -76490894 + MSTA LTR MaLR 1 428 0 7168 195 66 9 chr9 41371733 41373289 -76489338 + MSTA-int LTR MaLR 1 1645 -6 2396 155 21 16 chr9 41373294 41373720 -76488907 + MSTA LTR MaLR 1 428 0 1728 184 33 0 chr9 41373951 41374250 -76488377 + 7SLRNA srpRNA srpRNA 10 318 -2 22 0 0 0 chr9 41374349 41374371 -76488256 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr9 41374526 41374562 -76488065 + AT_rich Low_complexity Low_complexity 1 36 0 207 114 0 0 chr9 41375041 41375076 -76487551 + (CA)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr9 41375966 41375987 -76486640 + AT_rich Low_complexity Low_complexity 1 21 0 216 214 0 0 chr9 41376053 41376095 -76486532 + A-rich Low_complexity Low_complexity 1 42 0 30 69 0 0 chr9 41376495 41376553 -76486074 + AT_rich Low_complexity Low_complexity 1 58 0 23 0 0 0 chr9 41376930 41376953 -76485674 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr9 41377870 41377896 -76484731 + AT_rich Low_complexity Low_complexity 1 26 0 30 0 0 0 chr9 41378147 41378177 -76484450 + AT_rich Low_complexity Low_complexity 1 30 0 1925 148 3 16 chr9 41378223 41378528 -76484099 - AluSg SINE Alu -9 301 1 1616 219 106 9 chr9 41378671 41379096 -76483531 - MER31B LTR ERV1 0 466 1 677 333 124 16 chr9 41381160 41381602 -76481025 + L2 LINE L2 2472 2961 -353 245 286 40 91 chr9 41381710 41381909 -76480718 + L2 LINE L2 3119 3307 -6 418 321 102 43 chr9 41382109 41382598 -76480029 - LTR33A LTR ERVL -4 519 2 2262 73 0 0 chr9 41382662 41382936 -76479691 + AluY SINE Alu 14 287 -24 226 283 0 0 chr9 41383259 41383312 -76479315 + L2 LINE L2 3211 3263 -9 282 359 19 0 chr9 41384582 41384688 -76477939 - L2 LINE L2 -4 3268 3161 23 33 0 0 chr9 41385284 41385314 -76477313 + AT_rich Low_complexity Low_complexity 1 30 0 13106 158 22 6 chr9 41385643 41387675 -76474952 + Tigger1 DNA MER2_type 24 2100 -318 2058 130 10 0 chr9 41387675 41387974 -76474653 + AluSx SINE Alu 7 308 -4 13106 158 22 6 chr9 41387974 41388298 -76474329 + Tigger1 DNA MER2_type 2100 2417 -1 23 33 0 0 chr9 41388578 41388608 -76474019 + AT_rich Low_complexity Low_complexity 1 30 0 743 242 121 14 chr9 41388969 41389184 -76473443 - MER8 DNA MER2_type 0 239 2 2392 17 104 0 chr9 41390034 41390322 -76472305 + AluYb8 SINE Alu 1 318 0 30 0 0 0 chr9 41390848 41390878 -76471749 + AT_rich Low_complexity Low_complexity 1 30 0 32 26 0 0 chr9 41391145 41391184 -76471443 + AT_rich Low_complexity Low_complexity 1 39 0 1081 83 0 0 chr9 41391276 41391421 -76471206 + L1PA6 LINE L1 6005 6149 -5 32 26 0 0 chr9 41391589 41391628 -76470999 + AT_rich Low_complexity Low_complexity 1 39 0 29 47 0 0 chr9 41391686 41391729 -76470898 + AT_rich Low_complexity Low_complexity 1 43 0 25 0 0 0 chr9 41391746 41391771 -76470856 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr9 41391814 41391843 -76470784 + AT_rich Low_complexity Low_complexity 1 29 0 23 68 0 0 chr9 41391882 41391926 -76470701 + AT_rich Low_complexity Low_complexity 1 44 0 21 57 0 0 chr9 41391959 41391994 -76470633 + AT_rich Low_complexity Low_complexity 1 35 0 2151 123 0 26 chr9 41392024 41392334 -76470293 - AluY SINE Alu -9 302 1 662 229 51 6 chr9 41392459 41392616 -76470011 + MLT1A2 LTR MaLR 157 320 -54 1221 311 37 67 chr9 41392624 41393878 -76468749 + L1PA12 LINE L1 8 1762 -5819 1986 165 25 25 chr9 41393878 41394242 -76468385 + THE1B LTR MaLR 1 364 0 10813 107 5 2 chr9 41394242 41395812 -76466815 + THE1B-int LTR MaLR 1 1575 -5 1953 179 16 28 chr9 41395817 41396181 -76466446 + THE1B LTR MaLR 1 360 -4 6591 266 17 11 chr9 41396185 41397937 -76464690 + L1PA12 LINE L1 1539 3279 -4305 1857 118 93 21 chr9 41397937 41398226 -76464401 + AluY SINE Alu 1 310 -1 6591 266 17 11 chr9 41398226 41400485 -76462142 + L1PA12 LINE L1 3279 5251 -2333 1981 210 47 0 chr9 41400516 41401001 -76461626 - L1 LINE L1 -1097 5049 4542 5036 142 2 6 chr9 41401002 41401800 -76460827 + THE1C-int LTR MaLR 786 1580 0 1930 165 32 19 chr9 41401800 41402170 -76460457 + THE1C LTR MaLR 1 375 0 2391 288 31 41 chr9 41402181 41402337 -76460290 - L1PA13 LINE L1 -4712 2075 1919 1828 142 24 27 chr9 41402337 41402350 -76460277 - AluSx SINE Alu -17 295 283 414 0 0 0 chr9 41402350 41402396 -76460231 + (TG)n Simple_repeat Simple_repeat 1 46 0 1828 142 24 27 chr9 41402396 41402677 -76459950 - AluSx SINE Alu -29 283 2 2391 288 31 41 chr9 41402677 41404219 -76458408 - L1PA13 LINE L1 -4868 1919 1 638 328 70 36 chr9 41404454 41405186 -76457441 - L1MEd LINE L1 -4864 1255 590 1868 138 0 0 chr9 41405566 41405826 -76456801 - AluSg SINE Alu -16 294 35 28 29 0 0 chr9 41405878 41405913 -76456714 + AT_rich Low_complexity Low_complexity 1 35 0 240 192 128 0 chr9 41406370 41406448 -76456179 - Charlie2a DNA MER1_type -1231 1631 1544 1279 298 90 14 chr9 41406562 41407505 -76455122 - Charlie2a DNA MER1_type -1448 1414 400 1069 270 86 55 chr9 41407637 41408277 -76454350 + L1ME2 LINE L1 134 793 -5603 1117 269 57 35 chr9 41408333 41408879 -76453748 + L1ME2 LINE L1 5549 6106 -127 1190 261 71 48 chr9 41409034 41409612 -76453015 + L1ME2 LINE L1 5558 6148 -16 27 96 0 0 chr9 41410344 41410427 -76452200 + AT_rich Low_complexity Low_complexity 1 83 0 331 250 0 0 chr9 41410710 41410766 -76451861 + L1PA13 LINE L1 762 817 -5970 769 349 76 8 chr9 41410783 41411138 -76451489 + L1PA13 LINE L1 877 1255 -5532 1150 264 38 106 chr9 41411212 41411852 -76450775 - LTR4 LTR ERV1 0 596 1 1418 220 82 14 chr9 41411865 41412308 -76450319 + LTR22 LTR ERVK 16 458 0 4331 175 22 35 chr9 41412310 41413248 -76449379 + L1PA13 LINE L1 1441 2380 -4417 2029 145 33 36 chr9 41413248 41413613 -76449014 - THE1B LTR MaLR 0 364 1 7426 132 16 5 chr9 41413613 41414722 -76447905 - THE1B-int LTR MaLR 0 1580 460 46 61 0 26 chr9 41414722 41414836 -76447791 + AT_rich Low_complexity Low_complexity 1 111 0 912 259 31 31 chr9 41415529 41415823 -76446804 - MER58B DNA MER1_type -12 329 36 4302 154 71 28 chr9 41416302 41416899 -76445728 - Tigger3b DNA MER2_type -1797 1231 584 7743 26 2 1 chr9 41416899 41418243 -76444384 + L1PA3 LINE L1 4801 6152 -3 4302 154 71 28 chr9 41418243 41418508 -76444119 - Tigger3b DNA MER2_type -2444 584 332 457 198 10 31 chr9 41418529 41418625 -76444002 - Tigger3b DNA MER2_type -1137 94 1 1830 127 20 23 chr9 41418701 41419001 -76443626 - AluSx SINE Alu -13 299 1 2401 231 35 69 chr9 41419088 41419772 -76442855 - MER76 LTR ERV -27 661 1 2267 58 41 0 chr9 41421988 41422281 -76440346 + AluY SINE Alu 1 305 -6 2215 70 0 7 chr9 41422526 41422864 -76439763 + AluY SINE Alu 1 336 0 1267 194 104 18 chr9 41422951 41423229 -76439398 + AluJo SINE Alu 1 302 0 23 0 0 0 chr9 41423312 41423335 -76439292 + AT_rich Low_complexity Low_complexity 1 23 0 1722 305 155 23 chr9 41423670 41424412 -76438215 + L1MD2 LINE L1 9 848 -5561 2324 229 4 13 chr9 41424412 41424657 -76437970 + MER70A LTR ERVL 1 242 -230 2181 86 17 10 chr9 41424657 41424959 -76437668 + AluSq SINE Alu 1 304 -9 2324 229 4 13 chr9 41424959 41425189 -76437438 + MER70A LTR ERVL 242 472 0 4995 199 83 6 chr9 41425198 41426189 -76436438 + MER70A-int LTR ERVL 10 1076 -3947 493 179 12 0 chr9 41426208 41426292 -76436335 + MER70A-int LTR ERVL 2300 2384 -2639 1957 110 35 22 chr9 41426292 41426686 -76435941 - LTR7 LTR ERV1 0 450 1 2918 95 7 11 chr9 41426686 41427119 -76435508 - HERVH LTR ERV1 0 7713 7283 7199 138 6 7 chr9 41427138 41428631 -76433996 - HERVH LTR ERV1 -2287 4242 3582 708 120 0 34 chr9 41428633 41428750 -76433877 - HERVH LTR ERV1 -4988 2725 2613 2041 115 26 9 chr9 41428757 41429148 -76433479 - LTR7 LTR ERV1 0 450 1 13990 187 38 14 chr9 41429148 41431298 -76431329 + MER70A-int LTR ERVL 2380 4604 -419 1872 127 3 27 chr9 41431298 41431597 -76431030 - AluSp SINE Alu -21 292 1 13990 187 38 14 chr9 41431597 41432027 -76430600 + MER70A-int LTR ERVL 4604 5022 -1 2089 222 4 68 chr9 41432035 41432539 -76430088 + MER70A LTR ERVL 1 472 0 2145 237 20 28 chr9 41432540 41433283 -76429344 + L1MD2 LINE L1 845 1585 -4821 1101 222 42 114 chr9 41433291 41433792 -76428835 - MLT1D LTR MaLR -40 465 1 227 408 90 8 chr9 41434030 41434275 -76428352 + L3 LINE CR1 116 380 -1197 3674 154 32 50 chr9 41434297 41435082 -76427545 - L1MA5 LINE L1 0 6300 5530 791 181 0 0 chr9 41435094 41435249 -76427378 - L1MA5 LINE L1 -1120 5026 4872 1041 243 92 64 chr9 41435251 41436297 -76426330 + L1MD2 LINE L1 1571 2644 -3762 491 277 43 56 chr9 41436695 41436911 -76425716 + MER61D LTR ERV1 338 1237 -10 1925 241 43 53 chr9 41436911 41437141 -76425486 + L1MD2 LINE L1 2667 2898 -3508 273 109 0 0 chr9 41437141 41437187 -76425440 + (CA)n Simple_repeat Simple_repeat 1 46 0 1925 241 43 53 chr9 41437187 41437836 -76424791 + L1MD2 LINE L1 2898 3537 -2869 1145 218 23 32 chr9 41437813 41438161 -76424466 + L1MD2 LINE L1 5523 5867 -635 * 297 189 0 78 chr9 41438161 41438251 -76424376 - L1MA1 LINE L1 -233 6069 5987 30 45 0 0 chr9 41438269 41438313 -76424314 + AT_rich Low_complexity Low_complexity 1 44 0 789 254 78 32 chr9 41438313 41438596 -76424031 + L1MD2 LINE L1 5855 6150 -469 1322 230 78 78 chr9 41438640 41439452 -76423175 + SST1 Satellite centromeric 751 1562 -1 489 58 0 0 chr9 41439456 41439525 -76423102 + (TG)n Simple_repeat Simple_repeat 2 70 0 239 173 19 0 chr9 41439532 41439584 -76423043 + CT-rich Low_complexity Low_complexity 2 54 0 2690 257 75 55 chr9 41440323 41440574 -76422053 + SST1 Satellite centromeric 1 245 -1318 309 26 0 0 chr9 41440574 41440612 -76422015 + (CTGGGG)n Simple_repeat Simple_repeat 2 39 0 2690 257 75 55 chr9 41440612 41441891 -76420736 + SST1 Satellite centromeric 245 1562 -1 204 40 0 0 chr9 41441895 41441920 -76420707 + (TG)n Simple_repeat Simple_repeat 2 26 0 222 220 17 0 chr9 41441920 41441979 -76420648 + CT-rich Low_complexity Low_complexity 2 61 0 2034 269 57 65 chr9 41441980 41443291 -76419336 + SST1 Satellite centromeric 262 1562 -1 186 43 0 0 chr9 41443295 41443318 -76419309 + (TG)n Simple_repeat Simple_repeat 2 24 0 240 220 17 0 chr9 41443318 41443377 -76419250 + CT-rich Low_complexity Low_complexity 2 61 0 2897 274 52 54 chr9 41444109 41446117 -76416510 - SST1 Satellite centromeric -13 2298 250 363 23 0 0 chr9 41446117 41446161 -76416466 + (CCCCAG)n Simple_repeat Simple_repeat 2 45 0 2897 274 52 54 chr9 41446161 41446411 -76416216 - SST1 Satellite centromeric -2061 250 1 249 210 16 0 chr9 41447144 41447206 -76415421 + GA-rich Low_complexity Low_complexity 1 63 0 261 57 0 0 chr9 41447206 41447241 -76415386 + (CA)n Simple_repeat Simple_repeat 2 36 0 817 262 67 52 chr9 41447267 41447744 -76414883 - SST1 Satellite centromeric -14 1549 1066 26 74 0 0 chr9 41448254 41448308 -76414319 + AT_rich Low_complexity Low_complexity 1 54 0 181 167 24 24 chr9 41448851 41448893 -76413734 - L2 LINE L2 -85 3187 3146 318 26 0 0 chr9 41449056 41449095 -76413532 + (CA)n Simple_repeat Simple_repeat 2 40 0 330 87 0 0 chr9 41451363 41451409 -76411218 + (TG)n Simple_repeat Simple_repeat 1 46 0 21 57 0 0 chr9 41452435 41452470 -76410157 + AT_rich Low_complexity Low_complexity 1 35 0 258 32 0 0 chr9 41452558 41452589 -76410038 + (CA)n Simple_repeat Simple_repeat 1 31 0 288 137 0 0 chr9 41454124 41454175 -76408452 + (CGGGGG)n Simple_repeat Simple_repeat 2 52 0 913 201 0 0 chr9 41454807 41454971 -76407656 - FRAM SINE Alu -2 164 1 207 69 0 0 chr9 41455323 41455352 -76407275 + (GA)n Simple_repeat Simple_repeat 2 30 0 495 270 190 6 chr9 41458069 41458232 -76404395 + MIR SINE MIR 2 194 -68 658 172 0 39 chr9 41458443 41458485 -76404142 - MER5B DNA MER1_type -1 177 135 2037 123 3 3 chr9 41458485 41458795 -76403832 - AluSq SINE Alu -3 310 1 658 172 0 39 chr9 41458795 41458880 -76403747 - MER5B DNA MER1_type -43 135 55 3324 33 7 7 chr9 41458880 41459379 -76403248 - L1PA2 LINE L1 -1 6154 5657 1806 24 0 0 chr9 41459251 41459459 -76403168 + L1P1 LINE L1 5593 5800 -355 301 42 62 21 chr9 41459461 41459509 -76403118 - MER5B DNA MER1_type -121 57 8 432 290 48 41 chr9 41460326 41460471 -76402156 + MIR SINE MIR 27 172 -90 375 297 43 65 chr9 41460629 41460814 -76401813 - MIR SINE MIR -61 201 21 * 929 235 32 44 chr9 41460758 41460827 -76401800 + MIR SINE MIR 13 81 -181 1957 138 2 121 chr9 41460827 41461241 -76401386 - MER47A DNA MER2_type -1 365 1 929 235 32 44 chr9 41461241 41461422 -76401205 + MIR SINE MIR 81 260 -2 208 338 23 8 chr9 41462279 41462378 -76400249 - MIR SINE MIR -65 143 44 427 304 19 0 chr9 41463108 41463266 -76399361 - MIR3 SINE MIR 0 208 48 302 250 180 0 chr9 41463267 41463367 -76399260 - L2 LINE L2 -2 3270 3153 436 231 11 0 chr9 41464997 41465088 -76397539 - MIR SINE MIR -115 147 56 209 108 27 0 chr9 41465111 41465148 -76397479 + GA-rich Low_complexity Low_complexity 3 40 0 215 303 64 37 chr9 41465342 41465451 -76397176 + MIR3 SINE MIR 11 122 -86 237 280 16 123 chr9 41466169 41466412 -76396215 - L3b LINE CR1 -189 1394 1178 1420 252 113 21 chr9 41466766 41467309 -76395318 - L2 LINE L2 -18 3295 2696 2163 130 0 0 chr9 41467309 41467601 -76395026 - AluSg SINE Alu -18 292 1 1420 252 113 21 chr9 41467601 41467778 -76394849 - L2 LINE L2 -617 2696 2537 190 175 18 105 chr9 41470117 41470174 -76392453 - MIR3 SINE MIR 0 208 157 2217 116 0 7 chr9 41470360 41470662 -76391965 - AluY SINE Alu -11 300 1 679 273 60 0 chr9 41470844 41471027 -76391600 - MIR SINE MIR -10 252 59 206 321 18 0 chr9 41471124 41471180 -76391447 - MIR SINE MIR -115 93 37 794 81 9 0 chr9 41471217 41471328 -76391299 - HY1 scRNA scRNA 0 112 1 349 213 18 29 chr9 41471437 41471598 -76391029 + MIR SINE MIR 29 260 -2 25 31 0 0 chr9 41471957 41471989 -76390638 + AT_rich Low_complexity Low_complexity 1 32 0 23 86 0 0 chr9 41472665 41472723 -76389904 + AT_rich Low_complexity Low_complexity 1 58 0 193 293 120 60 chr9 41474244 41474394 -76388233 + L2 LINE L2 2353 2511 -803 * 344 239 109 0 chr9 41474385 41474477 -76388150 - L2 LINE L2 -10 3303 3202 472 152 0 0 chr9 41474968 41475034 -76387593 + AluJ/FLAM SINE Alu 9 74 -238 250 118 0 59 chr9 41475068 41475119 -76387508 + Alu SINE Alu 251 298 -4 841 178 0 0 chr9 41475123 41475258 -76387369 + AluJb SINE Alu 167 301 -11 2115 123 0 3 chr9 41475263 41475555 -76387072 + AluSx SINE Alu 21 311 -1 210 278 155 0 chr9 41475725 41475822 -76386805 + L2 LINE L2 2910 3021 -251 589 221 83 33 chr9 41476468 41476649 -76385978 + L2 LINE L2 3122 3311 -2 505 261 54 8 chr9 41476666 41476796 -76385831 + L2 LINE L2 3137 3272 0 1901 166 3 16 chr9 41477211 41477519 -76385108 + AluJb SINE Alu 1 304 -8 403 327 51 0 chr9 41479912 41480068 -76382559 + L2 LINE L2 3101 3264 -8 370 0 40 0 chr9 41480352 41480402 -76382225 + (CA)n Simple_repeat Simple_repeat 2 53 0 329 283 21 84 chr9 41480750 41480877 -76381750 - MIR3 SINE MIR -6 202 83 2094 137 3 3 chr9 41480877 41481177 -76381450 + AluSx SINE Alu 1 300 -12 329 283 21 84 chr9 41481177 41481216 -76381411 - MIR3 SINE MIR -125 83 43 252 271 0 0 chr9 41481208 41481256 -76381371 - MIR SINE MIR -124 84 37 * 1720 149 73 0 chr9 41481326 41481587 -76381040 - AluJb SINE Alu -32 280 1 524 254 71 12 chr9 41481587 41481756 -76380871 - MIR SINE MIR -71 191 13 465 259 182 0 chr9 41482494 41482637 -76379990 - MER5A DNA MER1_type 0 189 21 659 330 66 24 chr9 41482778 41482877 -76379750 + L2 LINE L2 2959 3052 -261 2371 91 0 0 chr9 41482877 41483225 -76379402 - AluSp SINE Alu 0 348 1 659 330 66 24 chr9 41483225 41483457 -76379170 + L2 LINE L2 3052 3305 -8 2119 142 7 0 chr9 41483458 41483768 -76378859 + AluSx SINE Alu 1 312 0 535 340 7 0 chr9 41484103 41484247 -76378380 - L2 LINE L2 -1 3271 3127 313 235 62 0 chr9 41485442 41485523 -76377104 - MIR3 SINE MIR -15 193 108 670 176 125 60 chr9 41486410 41486626 -76376001 - MIR SINE MIR -10 252 23 320 93 0 0 chr9 41486744 41486787 -76375840 + MIR SINE MIR 104 146 -62 288 320 24 8 chr9 41487125 41487250 -76375377 - LTR33 LTR ERVL -5 516 390 262 253 154 68 chr9 41487301 41487522 -76375105 - LTR33 LTR ERVL -235 286 47 265 252 180 18 chr9 41487893 41488004 -76374623 + L2 LINE L2 3142 3270 -2 603 254 112 12 chr9 41488581 41488750 -76373877 + MIR SINE MIR 13 198 -64 669 179 9 0 chr9 41488763 41488869 -76373758 + FLAM_A SINE Alu 1 107 -35 2052 110 35 24 chr9 41488880 41489170 -76373457 - AluSq SINE Alu -20 293 1 2278 119 6 0 chr9 41489820 41490131 -76372496 + AluSq SINE Alu 1 313 0 349 263 132 33 chr9 41490195 41490347 -76372280 + MIR SINE MIR 64 230 -32 268 178 0 68 chr9 41490581 41490654 -76371973 + L2 LINE L2 3163 3230 -83 2449 158 17 13 chr9 41491184 41491653 -76370974 + L1MB7 LINE L1 5714 6184 0 335 213 133 0 chr9 41492353 41492428 -76370199 + MIR3 SINE MIR 76 160 -48 413 343 58 0 chr9 41492673 41492845 -76369782 + MIR SINE MIR 49 230 -32 2109 139 0 3 chr9 41492886 41493180 -76369447 - AluSx SINE Alu -19 293 1 301 304 138 54 chr9 41493244 41493593 -76369034 - MLT1J2 LTR MaLR -21 429 52 427 256 160 0 chr9 41494073 41494229 -76368398 + MIR SINE MIR 70 250 -12 287 274 25 96 chr9 41494560 41494717 -76367910 + MIR3 SINE MIR 40 185 -23 1062 227 36 8 chr9 41495081 41495332 -76367295 - MIR SINE MIR 0 262 5 758 237 34 36 chr9 41495334 41495588 -76367039 - MIR SINE MIR -3 259 7 1815 295 35 42 chr9 41498095 41499132 -76363495 - SST1 Satellite centromeric -534 1029 1 387 73 0 0 chr9 41499830 41499885 -76362742 + (CA)n Simple_repeat Simple_repeat 2 56 0 200 154 19 0 chr9 41499892 41499944 -76362683 + GA-rich Low_complexity Low_complexity 2 54 0 1274 184 57 111 chr9 41500171 41500557 -76362070 - MLT1A1 LTR MaLR 0 365 1 674 241 102 62 chr9 41500972 41501254 -76361373 - L1ME LINE L1 -393 5771 5502 2615 89 3 43 chr9 41501254 41501624 -76361003 + THE1A LTR MaLR 1 355 0 11389 115 2 1 chr9 41501624 41503201 -76359426 + THE1A-int LTR MaLR 1 1580 0 2259 141 0 22 chr9 41503201 41503564 -76359063 + THE1A LTR MaLR 1 355 0 674 241 102 62 chr9 41503564 41503728 -76358899 - L1ME LINE L1 -661 5503 5305 1956 151 3 3 chr9 41503844 41504136 -76358491 - AluSq SINE Alu -19 294 3 884 159 0 0 chr9 41504359 41504491 -76358136 - FLAM_C SINE Alu -1 132 1 1410 218 39 0 chr9 41504950 41505070 -76357557 + AluJb SINE Alu 1 115 -197 198 0 0 0 chr9 41505070 41505092 -76357535 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 1410 218 39 0 chr9 41505092 41505256 -76357371 + AluJb SINE Alu 115 296 -16 3961 153 44 4 chr9 41505258 41505939 -76356688 + Tigger1 DNA MER2_type 1066 1773 -645 2218 120 7 0 chr9 41505939 41506238 -76356389 - AluSp SINE Alu -12 301 1 550 206 32 123 chr9 41506295 41506514 -76356113 + MER115 DNA AcHobo 445 643 -50 32 43 0 0 chr9 41506695 41506741 -76355886 + AT_rich Low_complexity Low_complexity 1 46 0 533 85 79 18 chr9 41506741 41506905 -76355722 + (TATAA)n Simple_repeat Simple_repeat 5 178 0 3628 157 2 11 chr9 41506906 41507413 -76355214 + Tigger1 DNA MER2_type 1801 2302 -116 1946 136 39 0 chr9 41507413 41507693 -76354934 - AluSx SINE Alu -20 292 2 3628 157 2 11 chr9 41507693 41507809 -76354818 + Tigger1 DNA MER2_type 2302 2418 0 356 267 22 22 chr9 41507812 41507947 -76354680 - LTR16C LTR ERVL -17 474 340 997 275 107 26 chr9 41508294 41508840 -76353787 + MER115 DNA AcHobo 15 643 -50 1716 115 32 18 chr9 41509248 41509527 -76353100 - L1MA4 LINE L1 0 6300 6018 413 245 118 98 chr9 41509847 41510051 -76352576 - MIR SINE MIR -11 251 44 1952 154 0 7 chr9 41510151 41510450 -76352177 + AluSx SINE Alu 1 297 -15 336 297 50 0 chr9 41510547 41510648 -76351979 - L2 LINE L2 -15 3298 3193 188 246 18 53 chr9 41510964 41511021 -76351606 + L3 LINE CR1 1515 1569 -8 379 344 56 19 chr9 41511198 41511413 -76351214 - MIR SINE MIR -12 250 28 24 32 0 0 chr9 41511797 41511828 -76350799 + AT_rich Low_complexity Low_complexity 1 31 0 239 313 10 10 chr9 41511869 41511968 -76350659 + L1M4 LINE L1 3767 3865 -2281 602 111 0 11 chr9 41512066 41512156 -76350471 - L1PA16 LINE L1 -9 6157 6069 803 180 0 50 chr9 41512394 41512533 -76350094 + FLAM_A SINE Alu 1 132 -1 1456 230 19 6 chr9 41512534 41512862 -76349765 - MER93a LTR ERV1 -7 395 17 201 74 0 0 chr9 41513006 41513033 -76349594 + (CTTAT)n Simple_repeat Simple_repeat 5 31 0 599 177 26 44 chr9 41513385 41513498 -76349129 - AluSp SINE Alu -101 212 102 1836 152 3 7 chr9 41513590 41513880 -76348747 + AluJb SINE Alu 1 289 -23 2082 132 7 3 chr9 41514730 41515026 -76347601 + AluSq SINE Alu 5 301 -12 582 287 67 22 chr9 41515157 41515504 -76347123 + L1ME3A LINE L1 5421 5784 -389 1839 161 0 0 chr9 41515510 41515853 -76346774 - AluSx SINE Alu 0 345 3 1944 130 16 39 chr9 41515855 41516020 -76346607 - AluSx SINE Alu -12 300 144 1872 151 7 0 chr9 41516020 41516305 -76346322 - AluY SINE Alu -17 294 8 1944 130 16 39 chr9 41516305 41516446 -76346181 - AluSx SINE Alu -168 144 1 264 226 54 21 chr9 41516486 41516579 -76346048 + L1ME3A LINE L1 5852 5947 -223 1455 143 4 29 chr9 41516627 41516865 -76345762 + AluSg/x SINE Alu 66 297 -15 21 36 0 0 chr9 41516865 41516893 -76345734 + AT_rich Low_complexity Low_complexity 1 28 0 281 133 50 2 chr9 41517223 41517465 -76345162 + AluSq SINE Alu 1 292 -11 3474 179 40 17 chr9 41517731 41518424 -76344203 + L1MC2 LINE L1 5616 6328 -16 2088 114 0 0 chr9 41518424 41518752 -76343875 - AluY SINE Alu 0 328 1 3474 179 40 17 chr9 41518752 41518765 -76343862 + L1MC2 LINE L1 6328 6339 -5 963 170 0 0 chr9 41518765 41518912 -76343715 - AluJb SINE Alu -29 283 137 1387 204 23 5 chr9 41518917 41519232 -76343395 + L1MC/D LINE L1 5370 5629 -715 40 0 0 0 chr9 41519232 41519272 -76343355 + AT_rich Low_complexity Low_complexity 1 40 0 23 0 0 0 chr9 41519451 41519474 -76343153 + AT_rich Low_complexity Low_complexity 1 23 0 506 167 24 0 chr9 41519742 41519826 -76342801 + AluJ/FLAM SINE Alu 1 86 -226 223 290 40 95 chr9 41519965 41520165 -76342462 + L2 LINE L2 3119 3307 -6 550 323 102 43 chr9 41520365 41520854 -76341773 - LTR33A LTR ERVL -4 519 2 1939 138 10 3 chr9 41520918 41521216 -76341411 + AluSq SINE Alu 14 313 0 829 183 12 47 chr9 41521216 41521385 -76341242 + AluSg/x SINE Alu 132 294 -16 800 174 0 30 chr9 41521596 41521728 -76340899 + FLAM_C SINE Alu 3 130 -13 443 84 42 11 chr9 41521728 41521823 -76340804 + A-rich Low_complexity Low_complexity 1 98 0 353 167 0 56 chr9 41521849 41521921 -76340706 + AluJ/FRAM SINE Alu 225 292 -10 1335 197 4 0 chr9 41522377 41522626 -76340001 + AluJb SINE Alu 1 250 -62 241 154 0 0 chr9 41522626 41522665 -76339962 + Alu SINE Alu 39 77 -226 655 273 60 0 chr9 41522939 41523122 -76339505 - MIR SINE MIR -10 252 59 200 321 18 0 chr9 41523209 41523265 -76339362 - MIR SINE MIR -115 93 37 832 81 9 0 chr9 41523302 41523413 -76339214 - HY1 scRNA scRNA 0 112 1 333 213 18 29 chr9 41523522 41523683 -76338944 + MIR SINE MIR 29 260 -2 21 36 0 0 chr9 41524043 41524071 -76338556 + AT_rich Low_complexity Low_complexity 1 28 0 24 85 0 0 chr9 41524746 41524805 -76337822 + AT_rich Low_complexity Low_complexity 1 59 0 333 239 109 0 chr9 41526469 41526561 -76336066 - L2 LINE L2 -10 3303 3202 837 253 54 64 chr9 41527052 41527349 -76335278 + AluJb SINE Alu 9 302 -10 1734 136 12 0 chr9 41527355 41527612 -76335015 + AluSx SINE Alu 21 280 -32 351 0 0 0 chr9 41527613 41527652 -76334975 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 19569 21 1 0 chr9 41528613 41531671 -76330956 + L1HS LINE L1 3096 6155 0 219 69 0 0 chr9 41531671 41531700 -76330927 + (A)n Simple_repeat Simple_repeat 1 29 0 30 0 0 0 chr9 41532102 41532132 -76330495 + AT_rich Low_complexity Low_complexity 1 30 0 32 26 0 0 chr9 41532400 41532439 -76330188 + AT_rich Low_complexity Low_complexity 1 39 0 1141 90 0 0 chr9 41532531 41532676 -76329951 + L1PA6 LINE L1 6005 6149 -5 32 26 0 0 chr9 41532844 41532883 -76329744 + AT_rich Low_complexity Low_complexity 1 39 0 28 48 0 0 chr9 41532941 41532983 -76329644 + AT_rich Low_complexity Low_complexity 1 42 0 25 0 0 0 chr9 41533000 41533025 -76329602 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr9 41533069 41533098 -76329529 + AT_rich Low_complexity Low_complexity 1 29 0 23 68 0 0 chr9 41533137 41533181 -76329446 + AT_rich Low_complexity Low_complexity 1 44 0 21 57 0 0 chr9 41533214 41533249 -76329378 + AT_rich Low_complexity Low_complexity 1 35 0 2161 120 0 23 chr9 41533279 41533588 -76329039 - AluY SINE Alu -9 302 1 723 229 51 6 chr9 41533713 41533870 -76328757 + MLT1A2 LTR MaLR 157 320 -54 1468 303 43 72 chr9 41533878 41535132 -76327495 + L1PA12 LINE L1 8 1762 -5819 2166 162 25 25 chr9 41535132 41535496 -76327131 + THE1B LTR MaLR 1 364 0 11529 108 5 2 chr9 41535496 41537067 -76325560 + THE1B-int LTR MaLR 1 1575 -5 2061 184 16 28 chr9 41537072 41537436 -76325191 + THE1B LTR MaLR 1 360 -4 6909 269 19 12 chr9 41537440 41539190 -76323437 + L1PA12 LINE L1 1587 3324 -4260 1878 113 93 24 chr9 41539190 41539481 -76323146 + AluY SINE Alu 1 311 0 6909 269 19 12 chr9 41539481 41541665 -76320962 + L1PA12 LINE L1 3324 5185 -2399 188 246 18 53 chr9 41541931 41541988 -76320639 - L3 LINE CR1 -8 1569 1515 336 297 50 0 chr9 41542304 41542405 -76320222 + L2 LINE L2 3193 3298 -15 2156 125 0 0 chr9 41542502 41542797 -76319830 - AluSg SINE Alu -15 295 1 2035 107 35 24 chr9 41543447 41543737 -76318890 + AluSq SINE Alu 1 293 -20 698 179 9 0 chr9 41543748 41543854 -76318773 - FLAM_A SINE Alu -35 107 1 546 250 119 12 chr9 41543867 41544035 -76318592 - MIR SINE MIR -64 198 13 262 252 180 18 chr9 41544612 41544723 -76317904 - L2 LINE L2 -2 3270 3142 698 147 7 59 chr9 41544892 41545058 -76317569 - AluSp/q SINE Alu 0 313 176 2086 117 0 0 chr9 41545114 41545395 -76317232 + AluSg SINE Alu 29 309 -1 2286 214 117 8 chr9 41545783 41546303 -76316324 - MER77 LTR ERV1 -28 577 1 238 308 15 0 chr9 41546319 41546384 -76316243 + L1MC/D LINE L1 5511 5576 -2232 1842 172 3 7 chr9 41546415 41546717 -76315910 - AluJb SINE Alu -11 301 1 260 209 57 19 chr9 41546717 41546750 -76315877 + (TATATG)n Simple_repeat Simple_repeat 6 36 -78 1854 152 38 0 chr9 41546750 41547040 -76315587 + AluSx SINE Alu 1 301 -11 260 209 57 19 chr9 41547040 41547111 -76315516 + (TATATG)n Simple_repeat Simple_repeat 36 114 0 1651 167 26 22 chr9 41547411 41547722 -76314905 - MER44D DNA MER2_type -1 604 421 1839 157 3 40 chr9 41547723 41548116 -76314511 - AluSx SINE Alu 0 381 1 272 252 68 0 chr9 41548189 41548292 -76314335 + HAL1b LINE L1 1234 1343 -5 1824 169 11 0 chr9 41548427 41548706 -76313921 + AluSx SINE Alu 3 284 -28 1885 138 7 0 chr9 41548795 41549070 -76313557 + AluSx SINE Alu 1 277 -35 423 0 0 0 chr9 41549074 41549121 -76313506 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 189 0 0 0 chr9 41550211 41550232 -76312395 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 1537 197 14 7 chr9 41551060 41551350 -76311277 - AluJb SINE Alu -20 292 1 604 157 0 3 chr9 41551476 41551713 -76310914 + AluSx SINE Alu 1 308 -1 1532 180 54 21 chr9 41551798 41552131 -76310496 - L1MB8 LINE L1 0 6178 5835 841 255 49 75 chr9 41552555 41553038 -76309589 - PABL_B LTR ERV1 -42 625 1 1959 154 3 0 chr9 41553289 41553601 -76309026 - AluSq SINE Alu 0 313 1 2053 128 3 0 chr9 41553603 41553893 -76308734 - AluSx SINE Alu -21 291 1 1213 123 0 6 chr9 41553896 41554075 -76308552 - AluSq SINE Alu -5 308 131 23 0 0 0 chr9 41554077 41554100 -76308527 + AT_rich Low_complexity Low_complexity 1 23 0 530 115 13 0 chr9 41554350 41554428 -76308199 + AluY SINE Alu 217 295 -16 21 0 0 0 chr9 41554522 41554543 -76308084 + AT_rich Low_complexity Low_complexity 1 21 0 2017 131 3 16 chr9 41554715 41555020 -76307607 + AluSx SINE Alu 1 301 -11 1971 141 7 0 chr9 41555327 41555746 -76306881 + AluSx SINE Alu 4 424 0 1593 188 6 13 chr9 41556558 41556872 -76305755 - AluJb SINE Alu 0 312 1 2116 116 3 14 chr9 41556940 41557257 -76305370 + AluSp SINE Alu 1 314 0 1869 170 0 26 chr9 41557332 41557643 -76304984 + AluJo SINE Alu 1 303 -9 2100 138 0 0 chr9 41557643 41557939 -76304688 + AluSc SINE Alu 1 296 -13 1497 165 34 4 chr9 41557939 41558205 -76304422 - MER54A LTR ERVL -627 274 1 1606 147 143 0 chr9 41558388 41558647 -76303980 - AluSx SINE Alu -6 296 1 2244 107 3 0 chr9 41559247 41559545 -76303082 - AluSp SINE Alu -14 299 1 1467 166 6 94 chr9 41559550 41559881 -76302746 - AluSq SINE Alu -11 302 1 279 225 0 56 chr9 41560334 41560405 -76302222 - AluJ/FRAM SINE Alu -11 291 225 27 62 0 0 chr9 41560427 41560475 -76302152 + AT_rich Low_complexity Low_complexity 1 48 0 1682 142 4 0 chr9 41560704 41560979 -76301648 + AluSx SINE Alu 37 312 0 1887 142 10 3 chr9 41560979 41561290 -76301337 + AluSq SINE Alu 1 313 0 834 184 12 48 chr9 41561290 41561458 -76301169 + AluSg/x SINE Alu 134 295 -17 333 198 64 31 chr9 41561669 41561787 -76300840 + AluJo SINE Alu 3 116 -186 1061 14 35 0 chr9 41561787 41561929 -76300698 + (TAAAA)n Simple_repeat Simple_repeat 2 148 0 333 198 64 31 chr9 41561929 41562027 -76300600 + AluJo SINE Alu 116 292 -10 1292 189 4 0 chr9 41562484 41562728 -76299899 + AluJb SINE Alu 1 245 -67 1829 126 7 7 chr9 41562728 41563006 -76299621 + AluSx SINE Alu 34 311 -1 1090 224 17 23 chr9 41563049 41563348 -76299279 + AluJb SINE Alu 15 311 -1 3824 173 83 32 chr9 41563404 41564135 -76298492 - MER21B LTR ERV1 -1 862 83 1915 124 16 35 chr9 41564135 41564449 -76298178 + AluSx SINE Alu 3 310 -2 3824 173 83 32 chr9 41564449 41564537 -76298090 - MER21B LTR ERV1 -780 83 1 1858 159 20 48 chr9 41564838 41565235 -76297392 - LTR25 LTR ERV1 -47 747 362 903 151 201 28 chr9 41565235 41565563 -76297064 + LTR46 LTR ERV1 1 460 0 622 191 35 0 chr9 41565563 41565666 -76296961 - LTR25 LTR ERV1 -438 356 250 421 165 23 120 chr9 41565660 41565793 -76296834 - MER61E LTR ERV1 -417 152 33 * 1282 77 18 0 chr9 41566433 41566603 -76296024 + AluSg/x SINE Alu 114 286 -24 489 288 133 45 chr9 41566608 41566962 -76295665 - L2 LINE L2 -82 3231 2847 296 105 0 0 chr9 41567014 41567052 -76295575 - Alu SINE Alu -263 38 1 2205 107 3 0 chr9 41567425 41567734 -76294893 - AluSx SINE Alu -2 310 1 1643 172 3 0 chr9 41567787 41568078 -76294549 - AluSx SINE Alu -16 296 5 870 121 0 0 chr9 41568310 41568434 -76294193 + AluSq/x SINE Alu 1 124 -188 273 274 25 96 chr9 41568822 41568979 -76293648 + MIR3 SINE MIR 40 185 -23 1056 223 36 8 chr9 41569343 41569594 -76293033 - MIR SINE MIR 0 262 5 760 237 34 36 chr9 41569596 41569850 -76292777 - MIR SINE MIR -3 259 7 1052 296 39 28 chr9 41572358 41572895 -76289732 - SST1 Satellite centromeric -534 1029 487 1742 144 4 0 chr9 41572896 41573160 -76289467 - AluSp SINE Alu -48 265 1 583 233 23 114 chr9 41573217 41573436 -76289191 + MER115 DNA AcHobo 445 643 -50 498 101 82 6 chr9 41573619 41573777 -76288850 + (TATAA)n Simple_repeat Simple_repeat 5 174 0 33 56 0 0 chr9 41573777 41573831 -76288796 + AT_rich Low_complexity Low_complexity 1 54 0 3537 154 3 43 chr9 41573831 41574337 -76288290 + Tigger1 DNA MER2_type 1801 2277 -141 1908 118 39 0 chr9 41574337 41574617 -76288010 - AluSx SINE Alu -20 292 2 3537 154 3 43 chr9 41574617 41574754 -76287873 + Tigger1 DNA MER2_type 2277 2418 0 382 267 22 22 chr9 41574757 41574892 -76287735 - LTR16C LTR ERVL -17 474 340 1168 270 109 28 chr9 41575239 41575785 -76286842 + MER115 DNA AcHobo 15 643 -50 1711 113 14 18 chr9 41576193 41576477 -76286150 - L1MA4 LINE L1 0 6300 6018 414 245 118 98 chr9 41576801 41577005 -76285622 - MIR SINE MIR -11 251 44 1859 151 0 7 chr9 41577105 41577404 -76285223 + AluSx SINE Alu 1 297 -15 307 284 59 65 chr9 41577501 41577670 -76284957 - L2 LINE L2 -15 3298 3131 190 246 18 53 chr9 41577918 41577975 -76284652 + L3 LINE CR1 1515 1569 -8 435 335 56 19 chr9 41578152 41578367 -76284260 - MIR SINE MIR -12 250 28 303 384 53 0 chr9 41578775 41578926 -76283701 + L1 LINE L1 3707 3865 -2281 572 111 0 11 chr9 41579024 41579114 -76283513 - L1PA16 LINE L1 -9 6157 6069 746 181 0 51 chr9 41579352 41579490 -76283137 + FLAM_A SINE Alu 1 131 -2 1467 221 21 7 chr9 41579491 41579819 -76282808 - MER93a LTR ERV1 -7 395 17 201 74 0 0 chr9 41579963 41579990 -76282637 + (CTTAT)n Simple_repeat Simple_repeat 5 31 0 558 212 0 18 chr9 41580342 41580455 -76282172 - AluSp SINE Alu -101 212 102 1712 155 3 7 chr9 41580547 41580837 -76281790 + AluJb SINE Alu 1 289 -23 2113 128 0 0 chr9 41581687 41581992 -76280635 + AluSq SINE Alu 5 309 -4 485 303 77 30 chr9 41582123 41582460 -76280167 + L1ME3A LINE L1 5421 5773 -389 44 35 0 0 chr9 41582474 41582532 -76280095 + AT_rich Low_complexity Low_complexity 1 58 0 1721 161 0 0 chr9 41582532 41582818 -76279809 - AluSx SINE Alu -24 288 3 1896 127 16 38 chr9 41582820 41582993 -76279634 - AluSx SINE Alu -4 308 144 1586 170 7 3 chr9 41582993 41583276 -76279351 - AluY SINE Alu -20 291 8 1896 127 16 38 chr9 41583276 41583417 -76279210 - AluSx SINE Alu -168 144 1 254 226 54 21 chr9 41583457 41583550 -76279077 + L1ME3A LINE L1 5852 5947 -223 1384 143 4 29 chr9 41583598 41583836 -76278791 + AluSg/x SINE Alu 66 297 -15 21 36 0 0 chr9 41583836 41583864 -76278763 + AT_rich Low_complexity Low_complexity 1 28 0 289 129 50 2 chr9 41584194 41584436 -76278191 + AluSq SINE Alu 1 292 -11 3272 177 40 16 chr9 41584702 41585395 -76277232 + L1MC2 LINE L1 5616 6328 -16 2021 112 0 7 chr9 41585395 41585714 -76276913 - AluY SINE Alu 0 311 1 3272 177 40 16 chr9 41585714 41585727 -76276900 + L1MC2 LINE L1 6328 6339 -5 931 163 0 0 chr9 41585727 41585874 -76276753 - AluJb SINE Alu -29 283 137 1372 206 23 5 chr9 41585879 41586194 -76276433 + L1MC/D LINE L1 5370 5629 -715 40 0 0 0 chr9 41586194 41586234 -76276393 + AT_rich Low_complexity Low_complexity 1 40 0 23 0 0 0 chr9 41586413 41586436 -76276191 + AT_rich Low_complexity Low_complexity 1 23 0 914 222 14 32 chr9 41586709 41586925 -76275702 + AluSx SINE Alu 1 212 -100 233 182 0 0 chr9 41586934 41586978 -76275649 + Charlie1 DNA MER1_type 2718 2761 0 546 213 24 24 chr9 41586982 41587109 -76275518 - L2 LINE L2 0 3313 3187 983 122 0 0 chr9 41587147 41587286 -76275341 + AluSq/x SINE Alu 3 141 -171 2072 93 0 45 chr9 41587286 41587599 -76275028 + AluSx SINE Alu 1 299 -13 688 158 8 23 chr9 41587738 41587909 -76274718 - AluSp/q SINE Alu 0 313 176 1964 118 0 0 chr9 41587965 41588244 -76274383 + AluSg SINE Alu 29 307 -3 233 323 77 8 chr9 41588297 41588427 -76274200 + HAL1 LINE L1 2219 2357 -150 2306 215 115 6 chr9 41588632 41589152 -76273475 - MER77 LTR ERV1 -28 577 1 229 308 15 0 chr9 41589168 41589233 -76273394 + L1MC4 LINE L1 5511 5576 -2232 1730 176 3 7 chr9 41589264 41589566 -76273061 - AluJb SINE Alu -11 301 1 1787 156 10 3 chr9 41589599 41589907 -76272720 + AluSx SINE Alu 1 310 -2 1787 182 136 43 chr9 41589910 41590195 -76272432 - MER106B DNA MER1_type -527 532 275 1654 163 10 7 chr9 41590195 41590490 -76272137 - AluSx SINE Alu -16 296 1 1787 182 136 43 chr9 41590490 41590587 -76272040 - MER106B DNA MER1_type -784 275 188 2051 134 0 0 chr9 41590587 41590886 -76271741 + AluSx SINE Alu 1 299 -13 1787 182 136 43 chr9 41590886 41590986 -76271641 - MER106B DNA MER1_type -871 188 4 2049 130 0 0 chr9 41590988 41591287 -76271340 + AluSx SINE Alu 1 299 -13 1020 221 19 102 chr9 41591303 41591446 -76271181 + L1MC4 LINE L1 6646 6799 -1243 734 150 0 57 chr9 41591446 41591586 -76271041 - FLAM_C SINE Alu -1 132 1 1020 221 19 102 chr9 41591586 41591804 -76270823 + L1MC4 LINE L1 6799 6977 -1065 1958 130 7 3 chr9 41591804 41592103 -76270524 - AluSq SINE Alu -12 301 2 1210 102 5 88 chr9 41592441 41592682 -76269945 - AluSp SINE Alu 0 313 100 1954 131 0 3 chr9 41592682 41592979 -76269648 - AluSg SINE Alu -14 296 1 1691 149 7 24 chr9 41592987 41593276 -76269351 - AluSg SINE Alu -24 286 3 272 221 0 39 chr9 41593331 41593408 -76269219 - MER89 LTR ERV1 0 559 486 2094 237 9 14 chr9 41593411 41593537 -76269090 - L1P LINE L1 -858 5288 5163 1736 122 19 0 chr9 41593537 41593800 -76268827 - AluSg SINE Alu -3 307 40 2094 237 9 14 chr9 41593800 41594235 -76268392 - L1P LINE L1 -983 5163 4730 2338 156 19 12 chr9 41594245 41594663 -76267964 + L1PA15 LINE L1 5745 6165 0 2079 129 3 0 chr9 41594735 41595044 -76267583 + AluSg SINE Alu 1 310 0 2120 104 0 13 chr9 41595188 41595497 -76267130 + AluY SINE Alu 1 305 -6 2151 196 19 5 chr9 41595744 41596272 -76266355 - MER77 LTR ERV1 -28 577 2 1699 177 3 0 chr9 41596392 41596686 -76265941 - AluJb SINE Alu -17 295 1 252 188 47 0 chr9 41596687 41596719 -76265908 + (TA)n Simple_repeat Simple_repeat 1 30 -396 1664 182 3 0 chr9 41596719 41597016 -76265611 + AluSx SINE Alu 1 298 -14 252 188 47 0 chr9 41597016 41597094 -76265533 + (TA)n Simple_repeat Simple_repeat 30 426 0 1717 166 23 10 chr9 41597370 41597678 -76264949 - MER44D DNA MER2_type -1 604 421 1738 182 0 0 chr9 41597678 41598100 -76264527 - AluSx SINE Alu 0 425 4 288 276 52 15 chr9 41598144 41598278 -76264349 + HAL1b LINE L1 1205 1343 -5 613 189 38 0 chr9 41598407 41598513 -76264114 + AluSq/x SINE Alu 2 111 -202 839 127 22 0 chr9 41598542 41598676 -76263951 - AluSg/x SINE Alu -20 290 154 241 302 71 44 chr9 41598708 41598890 -76263737 + L1ME3A LINE L1 5970 6156 -14 573 208 169 65 chr9 41600295 41600603 -76262024 - LTR16A1 LTR ERVL 0 457 118 461 240 187 18 chr9 41600757 41600982 -76261645 + L2 LINE L2 59 321 -2993 2602 120 47 49 chr9 41600982 41601578 -76261049 + MER4E LTR ERV1 1 766 0 459 240 98 49 chr9 41601647 41601851 -76260776 + L2 LINE L2 651 864 -2450 787 71 71 5 chr9 41601855 41602009 -76260618 + LTR19A LTR ERV1 7 241 -245 260 95 0 0 chr9 41602009 41602051 -76260576 + LTR19A LTR ERV1 445 486 0 230 231 92 15 chr9 41602051 41602181 -76260446 + L2 LINE L2 879 1018 -2296 202 291 63 38 chr9 41602197 41602355 -76260272 - L3 LINE CR1 -315 1262 1101 * 260 303 148 16 chr9 41602330 41602452 -76260175 + L2 LINE L2 3163 3300 -13 528 161 60 0 chr9 41602467 41602616 -76260011 + (TGGA)n Simple_repeat Simple_repeat 4 161 0 763 152 35 10 chr9 41602646 41603147 -76259480 + (TGGA)n Simple_repeat Simple_repeat 1 513 0 690 191 21 9 chr9 41603166 41603498 -76259129 + (TGGA)n Simple_repeat Simple_repeat 1 336 0 1313 213 10 10 chr9 41604291 41604601 -76258026 + AluJo SINE Alu 1 310 -2 298 281 13 0 chr9 41605000 41605087 -76257540 - MIR SINE MIR -65 143 80 309 314 32 32 chr9 41606122 41606307 -76256320 + L2 LINE L2 3111 3295 -18 745 139 0 0 chr9 41606307 41606422 -76256205 - AluSx SINE Alu -4 305 191 1035 106 0 0 chr9 41606423 41606564 -76256063 - AluSx SINE Alu -172 141 1 772 147 0 29 chr9 41606617 41606753 -76255874 + FLAM_C SINE Alu 12 143 0 1185 313 92 18 chr9 41606770 41607502 -76255125 - L1M4 LINE L1 -1492 4654 3869 622 273 74 24 chr9 41607749 41608086 -76254541 + MER74B LTR ERVL 213 566 -56 268 88 0 0 chr9 41608212 41608246 -76254381 - AluSq/x SINE Alu -193 110 77 * 1597 237 125 31 chr9 41608236 41608409 -76254218 + MER69B DNA AcHobo 520 675 -1851 1559 161 50 4 chr9 41608409 41608688 -76253939 - AluJb SINE Alu -20 292 1 1597 237 125 31 chr9 41608688 41609122 -76253505 + MER69B DNA AcHobo 675 1184 -42 418 244 84 30 chr9 41609624 41609755 -76252872 + MER20 DNA MER1_type 25 162 -57 234 156 44 0 chr9 41610107 41610152 -76252475 - MIR SINE MIR -108 154 108 297 194 15 0 chr9 41610846 41610913 -76251714 + MIR SINE MIR 77 144 -118 2029 115 0 37 chr9 41610955 41611281 -76251346 + AluSq SINE Alu 1 315 0 810 204 6 29 chr9 41611306 41611478 -76251149 + FAM SINE Alu 1 44 -5 728 176 64 60 chr9 41612794 41613082 -76249545 + MSTD LTR MaLR 2 337 -59 2271 112 0 0 chr9 41613082 41613386 -76249241 - AluSx SINE Alu -8 304 1 634 243 14 7 chr9 41613388 41613536 -76249091 - MLT1C LTR MaLR -285 182 34 * 1961 99 0 29 chr9 41613545 41613817 -76248810 - AluSx SINE Alu -14 298 35 631 243 6 17 chr9 41613867 41614044 -76248583 - HAL1b LINE L1 -882 466 292 322 156 250 73 chr9 41614147 41614243 -76248384 + FLAM_A SINE Alu 3 115 -18 2286 104 7 0 chr9 41614330 41614638 -76247989 - AluSg SINE Alu 0 310 1 980 205 14 54 chr9 41615033 41615208 -76247419 - AluJo SINE Alu -6 306 146 1829 158 0 48 chr9 41615208 41615524 -76247103 - AluJb SINE Alu -11 301 1 980 205 14 54 chr9 41615524 41615645 -76246982 - AluJo SINE Alu -166 146 22 725 158 0 0 chr9 41615652 41615766 -76246861 - MER41B LTR ERV1 -12 623 510 2732 84 5 11 chr9 41615768 41616147 -76246480 - MER41B LTR ERV1 -258 377 1 414 111 48 0 chr9 41616619 41616682 -76245945 + MLT1J LTR MaLR 6 71 -396 961 267 22 83 chr9 41617265 41617756 -76244871 + MLT1J LTR MaLR 37 497 -14 687 217 14 7 chr9 41617855 41617998 -76244629 + MER83C LTR ERV1 49 192 -181 229 192 39 0 chr9 41618176 41618228 -76244399 + MER83B LTR ERV1 134 187 -191 866 247 94 0 chr9 41618237 41618460 -76244167 + MER83C LTR ERV1 130 373 0 361 205 0 12 chr9 41618506 41618589 -76244038 - MIR SINE MIR -101 161 80 908 154 6 0 chr9 41620945 41621120 -76241507 + (TCCA)n Simple_repeat Simple_repeat 3 178 0 666 229 0 0 chr9 41621098 41621277 -76241350 + (CCCA)n Simple_repeat Simple_repeat 1 179 0 * 347 234 20 37 chr9 41621579 41621598 -76241029 - ORSL DNA AcHobo -4 271 253 3788 113 11 31 chr9 41621598 41621733 -76240894 - MER4A LTR ERV1 0 600 464 2062 113 0 4 chr9 41621733 41622040 -76240587 - AluSg1 SINE Alu 0 312 7 3788 113 11 31 chr9 41622040 41622515 -76240112 - MER4A LTR ERV1 -136 464 1 347 234 20 37 chr9 41622515 41622712 -76239915 - ORSL DNA AcHobo -22 253 22 3298 161 18 76 chr9 41623185 41623919 -76238708 + LTR8 LTR ERV1 1 691 0 920 305 73 9 chr9 41625165 41625591 -76237036 + L1MC/D LINE L1 5298 5750 -2058 2592 56 0 3 chr9 41626332 41626636 -76235991 + AluY SINE Alu 1 303 -8 2441 96 3 0 chr9 41627499 41627811 -76234816 - AluSq SINE Alu 0 313 1 384 229 34 42 chr9 41628169 41628287 -76234340 - MER20 DNA MER1_type -4 215 99 2252 79 14 3 chr9 41628417 41628709 -76233918 + AluSc SINE Alu 1 295 -14 1842 183 117 76 chr9 41629086 41629584 -76233043 - MLT2B1 LTR ERVL 0 520 3 2450 78 0 0 chr9 41629747 41630053 -76232574 + AluY SINE Alu 1 306 -5 2964 231 42 1 chr9 41630054 41630774 -76231853 + L1 LINE L1 3349 4097 -2049 28 29 0 0 chr9 41630775 41630810 -76231817 + AT_rich Low_complexity Low_complexity 1 35 0 1417 97 97 0 chr9 41630815 41631052 -76231575 - L1MA8 LINE L1 0 6291 6032 3722 139 20 98 chr9 41631054 41631249 -76231378 + L1MA9 LINE L1 5137 5346 -966 2322 63 21 0 chr9 41631249 41631533 -76231094 + AluY SINE Alu 1 290 -21 3722 139 20 98 chr9 41631533 41632296 -76230331 + L1MA9 LINE L1 5346 6019 -293 347 109 0 0 chr9 41632299 41632345 -76230282 + L1 LINE L1 4088 4133 -2013 2629 188 34 3 chr9 41632346 41633116 -76229511 + L1M3 LINE L1 5001 5803 -368 799 191 7 0 chr9 41634582 41634734 -76227893 + L1 LINE L1 4144 4296 -1850 363 181 0 0 chr9 41634734 41634805 -76227822 + L1MA5A LINE L1 6226 6297 0 25 31 0 0 chr9 41634878 41634910 -76227717 + AT_rich Low_complexity Low_complexity 1 32 0 2421 65 0 3 chr9 41634939 41635233 -76227394 + AluY SINE Alu 1 293 -18 2312 92 0 3 chr9 41635594 41635887 -76226740 - AluSc SINE Alu -17 292 1 23 0 0 0 chr9 41636025 41636048 -76226579 + AT_rich Low_complexity Low_complexity 1 23 0 2226 51 0 0 chr9 41636325 41636619 -76226008 - AluY SINE Alu 0 321 28 835 258 41 54 chr9 41637138 41637590 -76225037 + MLT1C LTR MaLR 2 466 -1 237 308 30 30 chr9 41637716 41637849 -76224778 - L2 LINE L2 -4 3309 3177 2245 115 0 0 chr9 41638310 41638606 -76224021 + AluSq SINE Alu 1 296 -17 297 205 248 31 chr9 41640147 41640308 -76222319 + L2 LINE L2 3118 3313 0 2765 16 0 19 chr9 41640540 41640854 -76221773 - AluYa5 SINE Alu -3 308 1 260 285 165 45 chr9 41641817 41642017 -76220610 - MIR SINE MIR -19 243 20 721 320 62 49 chr9 41642277 41642665 -76219962 + L1MB2 LINE L1 413 805 -5498 261 0 0 0 chr9 41642833 41642862 -76219765 + (T)n Simple_repeat Simple_repeat 1 29 0 6397 224 79 41 chr9 41643107 41643425 -76219202 + L1MB2 LINE L1 773 1077 -5330 2247 125 0 22 chr9 41643425 41643745 -76218882 + AluSq SINE Alu 1 313 0 2376 97 0 3 chr9 41643746 41644056 -76218571 + AluY SINE Alu 1 309 -2 6397 224 79 41 chr9 41644056 41645993 -76216634 + L1MB2 LINE L1 1077 2939 -3468 2306 80 3 0 chr9 41645993 41646281 -76216346 - AluY SINE Alu -22 289 1 6397 224 79 41 chr9 41646281 41646511 -76216116 + L1MB2 LINE L1 2939 3159 -3248 2435 93 0 3 chr9 41646511 41646822 -76215805 + AluY SINE Alu 1 310 -1 6397 224 79 41 chr9 41646822 41647077 -76215550 + L1MB2 LINE L1 3159 3403 -3004 2450 82 0 0 chr9 41647077 41647383 -76215244 + AluY SINE Alu 1 306 -5 6397 224 79 41 chr9 41647383 41648146 -76214481 + L1MB2 LINE L1 3403 4135 -2272 1417 97 97 0 chr9 41648146 41648383 -76214244 - L1MA8 LINE L1 0 6291 6032 6397 224 79 41 chr9 41648383 41648581 -76214046 + L1MB2 LINE L1 4135 4324 -2083 2337 60 21 0 chr9 41648581 41648865 -76213762 + AluY SINE Alu 1 290 -21 6397 224 79 41 chr9 41648865 41650811 -76211816 + L1MB2 LINE L1 4324 6406 -1 1696 194 129 12 chr9 41650860 41651278 -76211349 + MLT1C LTR MaLR 1 467 0 1868 102 4 23 chr9 41652473 41652729 -76209898 + AluSq SINE Alu 1 251 -62 1723 181 0 26 chr9 41653246 41653550 -76209077 + AluJb SINE Alu 1 296 -16 207 293 53 53 chr9 41653837 41653970 -76208657 - MER5A DNA MER1_type -54 135 3 1318 221 112 66 chr9 41654331 41654788 -76207839 + MLT2F LTR ERVL 186 663 0 752 198 0 0 chr9 41654847 41654973 -76207654 + FLAM_C SINE Alu 2 127 -16 3159 232 67 26 chr9 41654977 41656195 -76206432 + L1MEc LINE L1 2037 3268 -2947 2204 116 3 0 chr9 41657003 41657296 -76205331 + AluSx SINE Alu 1 294 -18 232 296 82 0 chr9 41657508 41657606 -76205021 - MER5B DNA MER1_type 0 178 73 2033 130 3 0 chr9 41657622 41657914 -76204713 - AluSx SINE Alu -19 293 1 2400 59 0 0 chr9 41659888 41660170 -76202457 + AluY SINE Alu 1 280 -31 205 40 0 0 chr9 41660170 41660195 -76202432 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 607 307 17 6 chr9 41661156 41661335 -76201292 + MLT1J LTR MaLR 10 190 -321 15019 192 18 13 chr9 41661344 41666310 -76196317 + L1PA13 LINE L1 1 5015 -1782 4194 112 13 5 chr9 41666310 41666935 -76195692 + L1PA13 LINE L1 6176 6807 -7 2529 49 3 16 chr9 41666935 41667242 -76195385 + AluY SINE Alu 1 303 -8 186 364 13 0 chr9 41667250 41667327 -76195300 - MIR SINE MIR -151 111 34 22 35 0 0 chr9 41668436 41668465 -76194162 + AT_rich Low_complexity Low_complexity 1 29 0 1515 124 5 0 chr9 41670069 41670287 -76192340 + AluSg/x SINE Alu 89 307 -5 1516 205 6 21 chr9 41670297 41670628 -76191999 + L1PB4 LINE L1 5831 6156 0 1672 201 74 37 chr9 41671554 41672041 -76190586 + MLT1D LTR MaLR 1 505 0 333 0 0 0 chr9 41672833 41672870 -76189757 + (TG)n Simple_repeat Simple_repeat 1 37 0 334 322 17 25 chr9 41672925 41673043 -76189584 + L2 LINE L2 2906 3022 -291 1908 204 104 7 chr9 41673078 41673109 -76189518 - MLT2B2 LTR ERVL -11 504 477 363 44 0 0 chr9 41673109 41673154 -76189473 + (TG)n Simple_repeat Simple_repeat 2 46 0 1908 204 104 7 chr9 41673154 41673572 -76189055 - MLT2B2 LTR ERVL -38 477 11 411 281 48 0 chr9 41673588 41673734 -76188893 + L2 LINE L2 3161 3313 0 330 50 0 0 chr9 41673737 41673777 -76188850 - L1P LINE L1 -4370 1776 1737 3341 19 0 0 chr9 41673778 41674154 -76188473 + L1PA2 LINE L1 5780 6155 0 2161 85 0 0 chr9 41674182 41674453 -76188174 - AluY SINE Alu -3 308 38 2404 190 27 40 chr9 41674754 41675232 -76187395 + MLT2B1 LTR ERVL 1 472 -48 1340 133 9 14 chr9 41676721 41676939 -76185688 + L1PB3 LINE L1 5933 6149 -5 2124 174 16 5 chr9 41677357 41677743 -76184884 + MLT1B LTR MaLR 1 390 0 2415 92 0 0 chr9 41677767 41678071 -76184556 + AluY SINE Alu 1 304 -7 1147 168 0 0 chr9 41678071 41678250 -76184377 + AluSg/x SINE Alu 134 312 0 3516 63 44 6 chr9 41678534 41679013 -76183614 - L1PA8 LINE L1 -1 6171 5675 1345 226 43 3 chr9 41679013 41679314 -76183313 + MER65C LTR ERV1 37 349 -112 1008 146 20 0 chr9 41679318 41679469 -76183158 - LTR12 LTR ERV1 -232 482 329 * 6264 141 1 9 chr9 41679466 41680482 -76182145 - HERV9 LTR ERV1 -7235 1164 72 611 119 13 102 chr9 41680482 41680605 -76182022 - LTR12 LTR ERV1 0 714 582 2371 86 3 32 chr9 41680605 41680920 -76181707 - AluY SINE Alu -5 306 1 611 119 13 102 chr9 41680920 41680946 -76181681 - LTR12 LTR ERV1 -132 582 301 317 304 16 0 chr9 41680946 41681071 -76181556 - LTR30 LTR ERV1 -79 643 517 1215 118 5 62 chr9 41681071 41681282 -76181345 - LTR12 LTR ERV1 -463 251 53 238 250 0 0 chr9 41681282 41681334 -76181293 - LTR30 LTR ERV1 -670 52 1 440 236 0 0 chr9 41681334 41681423 -76181204 + LTR51 LTR ERV1 583 671 0 242 252 32 81 chr9 41682731 41682854 -76179773 + MIR SINE MIR 141 257 -5 398 256 104 0 chr9 41683091 41683216 -76179411 - MIR SINE MIR -35 227 90 290 310 17 9 chr9 41686115 41686231 -76176396 + MIR SINE MIR 41 157 -105 216 288 50 0 chr9 41686349 41686429 -76176198 + MIR3 SINE MIR 82 165 -43 2033 133 57 31 chr9 41686739 41687092 -76175535 + THE1B LTR MaLR 3 364 0 216 67 0 0 chr9 41687450 41687480 -76175147 + (TG)n Simple_repeat Simple_repeat 1 30 0 2516 53 0 3 chr9 41688085 41688387 -76174240 - AluY SINE Alu -10 301 1 243 229 98 35 chr9 41689125 41689257 -76173370 - L1ME LINE L1 -5901 169 30 2505 73 0 6 chr9 41689441 41689786 -76172841 + AluY SINE Alu 1 343 0 2030 208 50 15 chr9 41689806 41690126 -76172501 - L1MB5 LINE L1 -6 6168 5821 1892 154 0 13 chr9 41690126 41690459 -76172168 - AluSx SINE Alu 0 312 1 2030 208 50 15 chr9 41690459 41690604 -76172023 - L1MB5 LINE L1 -353 5821 5683 2020 152 0 3 chr9 41690709 41691018 -76171609 + AluSx SINE Alu 1 308 -4 554 288 71 4 chr9 41691555 41691781 -76170846 - MIR SINE MIR -10 252 12 24 0 0 0 chr9 41692333 41692357 -76170270 + AT_rich Low_complexity Low_complexity 1 24 0 327 288 124 13 chr9 41692653 41692806 -76169821 - MIR SINE MIR -36 226 57 182 219 0 0 chr9 41693021 41693053 -76169574 - L2 LINE L2 -86 3186 3155 1046 268 99 77 chr9 41693116 41693792 -76168835 - MER21B LTR ERV1 -149 714 24 3573 230 68 29 chr9 41694027 41694907 -76167720 - MER21B-int LTR ERV1 -42 4149 3147 2161 108 0 14 chr9 41694907 41695086 -76167541 - AluSp SINE Alu 0 312 137 2291 86 0 10 chr9 41695086 41695388 -76167239 - AluY SINE Alu -12 299 1 2161 108 0 14 chr9 41695388 41695524 -76167103 - AluSp SINE Alu -175 137 1 3573 230 68 29 chr9 41695524 41696131 -76166496 - MER21B-int LTR ERV1 -1044 3147 2565 636 283 36 43 chr9 41696139 41696212 -76166415 - MER21B-int LTR ERV1 -1907 2284 2212 1096 189 45 139 chr9 41696212 41696365 -76166262 + MLT1A1 LTR MaLR 1 167 -198 2104 103 24 3 chr9 41696365 41696656 -76165971 + AluY SINE Alu 6 302 -9 1096 189 45 139 chr9 41696656 41696905 -76165722 + MLT1A1 LTR MaLR 167 365 0 636 283 36 43 chr9 41696905 41697107 -76165520 - MER21B-int LTR ERV1 -1979 2212 2011 * 1592 256 41 62 chr9 41697101 41697717 -76164910 - MER4B-int LTR ERV1 -2294 4464 3862 1734 172 0 0 chr9 41697840 41698148 -76164479 + L1P5 LINE L1 4758 5065 -1081 2514 67 0 13 chr9 41698150 41698463 -76164164 + AluY SINE Alu 1 309 -2 828 173 0 0 chr9 41698464 41698603 -76164024 + L1P5 LINE L1 5597 5735 -421 887 259 5 0 chr9 41699663 41699848 -76162779 + MER5A DNA MER1_type 4 189 0 1313 129 39 28 chr9 41700320 41700575 -76162052 - L1MA8 LINE L1 -11 6280 6023 2361 100 0 13 chr9 41700575 41700885 -76161742 - AluY SINE Alu -5 306 1 1105 81 7 0 chr9 41700885 41701021 -76161606 - AluSp SINE Alu -176 137 1 1833 248 58 9 chr9 41701021 41701627 -76161000 - MER4B-int LTR ERV1 -953 3238 2565 612 286 36 43 chr9 41701635 41701708 -76160919 - MER4B-int LTR ERV1 -1907 2284 2212 1096 189 45 139 chr9 41701708 41701861 -76160766 + MLT1A1 LTR MaLR 1 167 -198 2112 103 24 3 chr9 41701861 41702152 -76160475 + AluY SINE Alu 6 302 -9 1096 189 45 139 chr9 41702152 41702401 -76160226 + MLT1A1 LTR MaLR 167 365 0 612 286 36 43 chr9 41702401 41702603 -76160024 - MER4B-int LTR ERV1 -1979 2212 2011 * 4056 239 51 84 chr9 41702597 41704030 -76158597 - MER4B-int LTR ERV1 -2294 4464 3079 2388 152 15 2 chr9 41704407 41704802 -76157825 + MER57A LTR ERV1 1 400 -3 2257 77 0 14 chr9 41705627 41705946 -76156681 + AluY SINE Alu 1 315 0 291 122 0 0 chr9 41706565 41706614 -76156013 + (GA)n Simple_repeat Simple_repeat 2 50 0 2377 97 0 13 chr9 41708931 41709241 -76153386 + AluY SINE Alu 1 306 -5 1358 122 39 28 chr9 41709241 41709496 -76153131 + L1MA8 LINE L1 6023 6280 -11 881 259 5 0 chr9 41709968 41710153 -76152474 - MER5A DNA MER1_type 0 189 4 809 180 0 0 chr9 41711213 41711352 -76151275 - L1P5 LINE L1 -421 5735 5597 2438 77 0 13 chr9 41711353 41711666 -76150961 - AluY SINE Alu -2 309 1 1612 197 0 3 chr9 41711668 41711977 -76150650 - L1P5 LINE L1 -1081 5065 4758 511 174 0 0 chr9 41711976 41712068 -76150559 + L1PA16 LINE L1 5736 5827 -339 * 484 257 21 14 chr9 41712072 41712212 -76150415 + AluYa5 SINE Alu 2 142 -169 304 191 22 0 chr9 41712533 41712617 -76150010 + L1MB5 LINE L1 6043 6132 -42 1992 79 8 11 chr9 41712663 41712957 -76149670 + AluY SINE Alu 17 309 0 754 307 98 48 chr9 41713197 41713467 -76149160 + L1MEd LINE L1 56 311 -5808 2252 84 37 7 chr9 41713467 41713765 -76148862 - AluY SINE Alu -3 308 2 754 307 98 48 chr9 41713765 41714344 -76148283 + L1MEd LINE L1 311 947 -5172 388 244 33 72 chr9 41714606 41714751 -76147876 - MER41B LTR ERV1 -205 430 281 1964 125 0 7 chr9 41714751 41715038 -76147589 - AluSx SINE Alu -1 311 27 1352 208 0 63 chr9 41715036 41715353 -76147274 - AluJo SINE Alu -15 297 1 * 388 244 33 72 chr9 41715353 41715388 -76147239 - MER41B LTR ERV1 -669 4294967262 258 286 292 25 61 chr9 41715759 41716036 -76146591 + L1MEd LINE L1 2468 2734 -3395 1758 139 174 47 chr9 41716215 41716256 -76146371 - MSTA LTR MaLR 0 428 394 2560 43 0 13 chr9 41716256 41716558 -76146069 + AluY SINE Alu 1 298 -13 1758 139 174 47 chr9 41716558 41716896 -76145731 - MSTA LTR MaLR -34 394 1 301 296 119 87 chr9 41717033 41717171 -76145456 + L1MEd LINE L1 3613 3745 -2384 1633 181 41 24 chr9 41717171 41717509 -76145118 + L1MC2 LINE L1 5990 6333 -11 301 296 119 87 chr9 41717509 41717647 -76144980 + L1MEd LINE L1 3745 3898 -2231 2345 66 0 23 chr9 41717686 41717989 -76144638 + AluY SINE Alu 1 296 -15 26 82 0 0 chr9 41718242 41718303 -76144324 + AT_rich Low_complexity Low_complexity 1 61 0 35 54 0 0 chr9 41718326 41718382 -76144245 + AT_rich Low_complexity Low_complexity 1 56 0 475 332 68 9 chr9 41718390 41718610 -76144017 + MIR SINE MIR 2 234 -28 2340 106 0 0 chr9 41719235 41719537 -76143090 - AluSx SINE Alu -10 302 1 230 289 119 19 chr9 41719557 41719716 -76142911 + MIR SINE MIR 70 244 -18 330 26 0 0 chr9 41719879 41719918 -76142709 + (CA)n Simple_repeat Simple_repeat 2 40 0 2366 96 0 0 chr9 41720764 41721066 -76141561 - AluSx SINE Alu -10 302 1 521 264 30 20 chr9 41721422 41721623 -76141004 - LTR37B LTR ERV1 -57 411 209 2382 81 0 0 chr9 41721775 41722073 -76140554 + AluSp SINE Alu 1 298 -15 226 242 106 0 chr9 41723849 41723915 -76138712 - MER110 LTR ERV1 -9 482 410 282 196 0 0 chr9 41723937 41723988 -76138639 - MSTA LTR MaLR 0 428 378 1220 133 0 0 chr9 41723988 41724161 -76138466 - AluSg/x SINE Alu -8 304 132 1092 247 42 76 chr9 41724175 41724309 -76138318 - MER110 LTR ERV1 -70 421 284 2364 85 7 0 chr9 41724309 41724603 -76138024 + AluY SINE Alu 1 296 -15 1092 247 42 76 chr9 41724603 41724970 -76137657 - MER110 LTR ERV1 -207 284 8 2414 86 16 0 chr9 41725304 41725607 -76137020 + AluSc SINE Alu 1 308 -1 2745 149 29 2 chr9 41726128 41726506 -76136121 + MSTA LTR MaLR 1 392 -36 1831 143 7 18 chr9 41726506 41726837 -76135790 + AluSx SINE Alu 1 312 0 2745 149 29 2 chr9 41726837 41726875 -76135752 + MSTA LTR MaLR 392 428 0 432 0 0 0 chr9 41727069 41727117 -76135510 + (TA)n Simple_repeat Simple_repeat 1 48 0 2320 79 3 0 chr9 41727119 41727409 -76135218 - AluY SINE Alu -20 291 1 306 0 0 0 chr9 41727790 41727824 -76134803 + (TTCA)n Simple_repeat Simple_repeat 2 35 0 2555 62 0 7 chr9 41727993 41728299 -76134328 + AluY SINE Alu 1 304 -7 2464 52 13 3 chr9 41728489 41728795 -76133832 + AluY SINE Alu 2 310 -1 1413 165 0 9 chr9 41729048 41729266 -76133361 + MER20 DNA MER1_type 4 219 0 2093 101 17 0 chr9 41729332 41729619 -76133008 + AluSc SINE Alu 1 292 -17 23 0 0 0 chr9 41729928 41729951 -76132676 + AT_rich Low_complexity Low_complexity 1 23 0 1913 170 57 24 chr9 41730437 41730820 -76131807 + MER31A LTR ERV1 1 396 -89 573 168 0 9 chr9 41730822 41730935 -76131692 + L1MA7 LINE L1 6178 6289 -2 373 265 12 3 chr9 41730955 41730984 -76131643 + L1M4 LINE L1 3712 3739 -2407 788 180 31 12 chr9 41730984 41731145 -76131482 + L1MA9 LINE L1 6149 6312 0 373 265 12 3 chr9 41731145 41731229 -76131398 + L1M4 LINE L1 3739 3828 -2318 2267 110 43 48 chr9 41731640 41732032 -76130595 + L1MA4A LINE L1 5913 6302 -1 330 26 0 0 chr9 41733010 41733049 -76129578 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 1919 131 4 0 chr9 41733052 41733326 -76129301 - AluSg SINE Alu -35 275 1 859 312 41 35 chr9 41733552 41734062 -76128565 - L1ME3A LINE L1 -204 5966 5454 207 139 0 0 chr9 41734394 41734430 -76128197 + (CA)n Simple_repeat Simple_repeat 2 37 0 2388 70 0 0 chr9 41734454 41734741 -76127886 + AluY SINE Alu 22 308 -3 366 269 69 63 chr9 41734839 41735014 -76127613 + MIR SINE MIR 46 221 -41 2959 234 40 76 chr9 41735196 41735308 -76127319 - MER21-int LTR ERV1 -110 4081 3967 2585 118 75 5 chr9 41735308 41735724 -76126903 + LTR56 LTR ERV1 1 445 0 2959 234 40 76 chr9 41735724 41735776 -76126851 - MER21-int LTR ERV1 -224 3967 3915 2067 134 0 6 chr9 41735776 41736090 -76126537 - AluSx SINE Alu 0 312 1 2188 204 40 73 chr9 41736099 41736676 -76125951 - MER74A LTR ERVL 0 558 1 2959 234 40 76 chr9 41736676 41736774 -76125853 - MER21-int LTR ERV1 -284 3907 3807 2247 98 3 3 chr9 41736774 41737081 -76125546 - AluY SINE Alu -4 307 1 2959 234 40 76 chr9 41737081 41737750 -76124877 - MER21-int LTR ERV1 -384 3807 3172 2415 46 0 26 chr9 41738188 41738491 -76124136 + AluY SINE Alu 1 295 -16 206 216 20 39 chr9 41738788 41738839 -76123788 - L2 LINE L2 -14 3299 3250 1482 200 43 145 chr9 41739128 41739443 -76123184 + LTR38B LTR ERV1 1 140 -401 2660 36 0 0 chr9 41739443 41739744 -76122883 + AluY SINE Alu 1 301 -10 1482 200 43 145 chr9 41739744 41740109 -76122518 + LTR38B LTR ERV1 140 541 0 503 15 0 15 chr9 41740135 41740200 -76122427 + (TG)n Simple_repeat Simple_repeat 2 65 0 228 67 0 0 chr9 41740384 41740414 -76122213 + (TGGA)n Simple_repeat Simple_repeat 4 33 0 1219 209 75 88 chr9 41741581 41741749 -76120878 - MER39 LTR ERV1 0 707 538 2406 57 0 0 chr9 41741749 41742059 -76120568 + AluY SINE Alu 1 310 0 1219 209 75 88 chr9 41742059 41742353 -76120274 - MER39 LTR ERV1 -169 538 250 2240 201 41 11 chr9 41742478 41742987 -76119640 - MER39 LTR ERV1 0 707 1 215 358 58 15 chr9 41743094 41743231 -76119396 + MIR SINE MIR 99 241 -21 187 204 0 111 chr9 41743202 41743256 -76119371 + L2 LINE L2 3258 3305 -8 * 212 267 0 17 chr9 41743860 41743920 -76118707 + (TATG)n Simple_repeat Simple_repeat 2 60 0 776 264 174 15 chr9 41744022 41744419 -76118208 - L2 LINE L2 -475 2839 2380 310 366 45 13 chr9 41745113 41745337 -76117290 - L1M4 LINE L1 -1002 5144 4914 2000 132 0 46 chr9 41745565 41745751 -76116876 + AluSx SINE Alu 1 167 -145 2794 95 125 5 chr9 41745751 41746151 -76116476 - LTR7 LTR ERV1 -2 448 1 2000 132 0 46 chr9 41746151 41746289 -76116338 + AluSx SINE Alu 167 310 -2 425 316 94 0 chr9 41746459 41746630 -76115997 + MIR SINE MIR 66 252 -10 225 0 0 0 chr9 41746705 41746730 -76115897 + (A)n Simple_repeat Simple_repeat 1 25 0 2296 96 0 17 chr9 41746904 41747206 -76115421 - AluY SINE Alu -14 297 1 705 204 52 12 chr9 41747245 41747417 -76115210 + MER96B DNA MER1_type? 1 179 -238 232 200 0 122 chr9 41747482 41747572 -76115055 - MER116 DNA Mariner -1 79 1 4253 142 81 68 chr9 41748309 41748651 -76113976 + MER4D LTR ERV1 1 337 -566 1987 129 38 0 chr9 41748651 41748938 -76113689 + AluSx SINE Alu 1 298 -14 4253 142 81 68 chr9 41748938 41749435 -76113192 + MER4D LTR ERV1 337 854 -49 3822 107 14 4 chr9 41749435 41749941 -76112686 - MER9 LTR ERVK 0 511 1 4253 142 81 68 chr9 41749941 41749992 -76112635 + MER4D LTR ERV1 854 903 0 1370 242 87 3 chr9 41750032 41750412 -76112215 + L1M4 LINE L1 4832 5243 -903 669 256 72 48 chr9 41750462 41750712 -76111915 + MIR SINE MIR 2 257 -5 1623 198 101 17 chr9 41751561 41751975 -76110652 - LTR48 LTR ERV1 -45 742 294 182 328 165 36 chr9 41752438 41752928 -76109699 - L2 LINE L2 -527 2787 2225 2143 119 7 0 chr9 41752928 41753221 -76109406 + AluSc SINE Alu 1 295 -14 182 328 165 36 chr9 41753221 41753252 -76109375 - L2 LINE L2 -1089 2225 2199 1198 246 39 21 chr9 41753609 41753939 -76108688 - MER4D LTR ERV1 0 903 568 1501 181 14 3 chr9 41754006 41754288 -76108339 - MER49 LTR ERV1 -638 285 1 198 194 45 0 chr9 41755112 41755179 -76107448 + GA-rich Low_complexity Low_complexity 3 72 0 418 334 72 40 chr9 41755703 41755950 -76106677 - MIR SINE MIR -6 256 2 218 371 14 0 chr9 41756969 41757039 -76105588 - MIR SINE MIR -187 75 5 3123 137 98 84 chr9 41757908 41758563 -76104064 + MER4A LTR ERV1 1 664 0 746 206 70 89 chr9 41758563 41758960 -76103667 + MER4C LTR ERV1 149 699 0 647 257 29 0 chr9 41760005 41760176 -76102451 - MER5B DNA MER1_type 0 178 3 509 80 13 0 chr9 41760208 41760283 -76102344 + (TTCC)n Simple_repeat Simple_repeat 1 76 0 2237 100 10 0 chr9 41760283 41760573 -76102054 - AluSp SINE Alu -20 293 1 1620 83 0 0 chr9 41761188 41761392 -76101235 + AluY SINE Alu 1 204 -107 2090 96 27 14 chr9 41761404 41761696 -76100931 + AluY SINE Alu 3 298 -13 2188 100 4 0 chr9 41762596 41762917 -76099710 - AluY SINE Alu 0 322 1 228 191 79 63 chr9 41764397 41764460 -76098167 + LTR33A LTR ERVL 460 523 0 288 313 62 51 chr9 41764830 41764891 -76097736 + MER5B DNA MER1_type 1 60 -118 2040 127 3 0 chr9 41764891 41765183 -76097444 + AluSx SINE Alu 1 293 -19 288 313 62 51 chr9 41765183 41765297 -76097330 + MER5B DNA MER1_type 60 178 0 17474 210 28 11 chr9 41765873 41768129 -76094498 + L1PA15 LINE L1 1319 3536 -3280 1983 66 92 4 chr9 41768129 41768400 -76094227 - AluY SINE Alu -16 295 1 17474 210 28 11 chr9 41768400 41771560 -76091067 + L1PA15 LINE L1 3536 6816 0 239 106 43 0 chr9 41771894 41771941 -76090686 + A-rich Low_complexity Low_complexity 2 50 0 1079 227 33 94 chr9 41773794 41774147 -76088480 + MLT1A2 LTR MaLR 1 329 -45 2423 70 0 16 chr9 41774147 41774459 -76088168 - AluY SINE Alu -4 307 1 1079 227 33 94 chr9 41774459 41774497 -76088130 + MLT1A2 LTR MaLR 329 368 -6 2463 63 0 0 chr9 41776072 41776359 -76086268 - AluY SINE Alu -24 287 1 821 259 8 59 chr9 41776449 41776544 -76086083 + MIR SINE MIR 2 100 -162 3050 148 25 16 chr9 41776544 41777029 -76085598 + LTR45B LTR ERV1 1 489 0 821 259 8 59 chr9 41777029 41777169 -76085458 + MIR SINE MIR 100 225 -37 23 33 0 0 chr9 41777555 41777585 -76085042 + AT_rich Low_complexity Low_complexity 1 30 0 2346 68 0 0 chr9 41777746 41778057 -76084570 + AluY SINE Alu 1 311 0 650 296 17 6 chr9 41779017 41779196 -76083431 + MLT1J LTR MaLR 10 190 -321 13527 187 16 10 chr9 41779205 41781800 -76080827 + L1PA13 LINE L1 1 2627 -4170 1603 199 118 97 chr9 41781910 41782623 -76080004 + LTR1B LTR ERV1 18 745 -81 3656 252 42 33 chr9 41782710 41783952 -76078675 + L1MC2 LINE L1 3818 5070 -1076 820 188 0 7 chr9 41783952 41784096 -76078531 - FRAM SINE Alu -12 164 22 2937 199 109 11 chr9 41784164 41784961 -76077666 + L1MC2 LINE L1 5132 6001 -343 209 385 19 10 chr9 41785320 41785424 -76077203 - MIR3 SINE MIR -10 198 94 378 274 29 73 chr9 41785694 41785810 -76076817 - L2 LINE L2 0 3313 3208 2136 124 0 7 chr9 41785810 41786108 -76076519 + AluSq SINE Alu 1 296 -17 378 274 29 73 chr9 41786108 41786195 -76076432 - L2 LINE L2 -105 3208 3119 4611 149 29 59 chr9 41786285 41786311 -76076316 - L1MA9 LINE L1 -35 6277 6252 2229 106 10 0 chr9 41786311 41786614 -76076013 + AluSq SINE Alu 1 306 -7 4611 149 29 59 chr9 41786614 41786709 -76075918 - L1MA9 LINE L1 -60 6252 6156 254 29 29 0 chr9 41786709 41786744 -76075883 + (TG)n Simple_repeat Simple_repeat 1 36 0 4611 149 29 59 chr9 41786744 41787532 -76075095 - L1MA9 LINE L1 -156 6156 5395 5014 186 139 11 chr9 41787550 41788294 -76074333 - L1MA9 LINE L1 -754 5392 4745 2285 88 3 16 chr9 41788294 41788599 -76074028 - AluSp SINE Alu -12 301 1 5014 186 139 11 chr9 41788599 41789064 -76073563 - L1MA9 LINE L1 -1401 4745 4048 2841 226 249 10 chr9 41789053 41791063 -76071564 - L1M4c LINE L1 -4529 2508 1 * 22 35 0 0 chr9 41791352 41791381 -76071246 + AT_rich Low_complexity Low_complexity 1 29 0 2557 53 0 0 chr9 41792242 41792545 -76070082 + AluY SINE Alu 1 303 -8 1600 167 0 16 chr9 41792554 41792811 -76069816 + AluJo SINE Alu 1 253 -59 317 211 14 0 chr9 41793915 41793986 -76068641 - MER74B LTR ERVL -501 121 50 1151 249 53 58 chr9 41793986 41794172 -76068455 + L1ME1 LINE L1 5671 5856 -478 2209 85 3 7 chr9 41794172 41794489 -76068138 + AluY SINE Alu 1 316 0 1151 249 53 58 chr9 41794489 41794807 -76067820 + L1ME1 LINE L1 5856 6333 -1 180 293 17 0 chr9 41794908 41794966 -76067661 + L2 LINE L2 2301 2359 -955 404 214 102 31 chr9 41795001 41795099 -76067528 + MER63 DNA MER1_type 3 733 -329 198 357 135 16 chr9 41795141 41795393 -76067234 + L2 LINE L2 3020 3301 -12 * 373 300 109 93 chr9 41795376 41796035 -76066592 - L2 LINE L2 -9 3263 2599 2316 135 125 16 chr9 41796035 41796420 -76066207 + MSTA LTR MaLR 1 427 -1 373 300 109 93 chr9 41796420 41796685 -76065942 - L2 LINE L2 -673 2599 2340 23 0 0 0 chr9 41796935 41796958 -76065669 + AT_rich Low_complexity Low_complexity 1 23 0 2885 101 13 0 chr9 41796963 41797359 -76065268 + L1PA13 LINE L1 5760 6160 -3 2305 80 7 7 chr9 41797365 41797654 -76064973 + AluSg SINE Alu 1 289 -21 2390 91 0 0 chr9 41798469 41798778 -76063849 + AluY SINE Alu 1 309 -2 201 95 0 48 chr9 41799459 41799477 -76063150 + (CAA)n Simple_repeat Simple_repeat 2 19 -22 2275 75 16 20 chr9 41799477 41799782 -76062845 + AluY SINE Alu 1 304 -7 201 95 0 48 chr9 41799782 41799805 -76062822 + (CAA)n Simple_repeat Simple_repeat 19 41 0 272 319 166 12 chr9 41801012 41801175 -76061452 + MIR3 SINE MIR 18 205 -3 1495 163 82 12 chr9 41801214 41801818 -76060809 - MER39 LTR ERV1 0 707 1 4531 189 77 13 chr9 41803140 41803706 -76058921 - L1MC2 LINE L1 -109 6235 5707 2301 99 0 0 chr9 41803706 41803998 -76058629 + AluSc SINE Alu 1 292 -17 4531 189 77 13 chr9 41803998 41805123 -76057504 - L1MC2 LINE L1 -637 5707 4443 6245 190 14 23 chr9 41805315 41806461 -76056166 + L1PA13 LINE L1 2 1137 -5650 2470 65 3 3 chr9 41807797 41808104 -76054523 + AluY SINE Alu 1 307 -4 540 178 0 19 chr9 41808323 41808430 -76054197 - MER53 DNA DNA -84 105 1 2478 77 0 3 chr9 41809160 41809472 -76053155 + AluY SINE Alu 1 311 0 227 340 46 56 chr9 41809560 41809757 -76052870 + L3 LINE CR1 1381 1575 -2 2448 86 3 3 chr9 41810320 41810633 -76051994 - AluSq SINE Alu 0 313 1 387 229 34 42 chr9 41810991 41811109 -76051518 - MER20 DNA MER1_type -4 215 99 2228 79 14 3 chr9 41811239 41811531 -76051096 + AluSc SINE Alu 1 295 -14 1973 185 117 76 chr9 41811908 41812406 -76050221 - MLT2B1 LTR ERVL 0 520 3 2838 16 0 0 chr9 41812569 41812876 -76049751 + AluYb8 SINE Alu 1 307 -11 1058 240 132 17 chr9 41813534 41813950 -76048677 - MLT1C LTR MaLR 0 467 4 1422 221 45 40 chr9 41814540 41814939 -76047688 - MLT1C LTR MaLR -8 459 59 410 207 76 83 chr9 41815711 41815856 -76046771 + MLT1H LTR MaLR 404 547 -2 266 191 19 76 chr9 41816564 41816669 -76045958 + LTR41 LTR ERVL 662 760 -13 772 180 64 0 chr9 41817193 41817365 -76045262 - L1MA7 LINE L1 -2 6289 6107 225 245 0 0 chr9 41817488 41817537 -76045090 + L2 LINE L2 3264 3312 -1 271 316 209 11 chr9 41817686 41817863 -76044764 - MIR SINE MIR 0 262 51 2098 107 24 0 chr9 41817878 41818169 -76044458 + AluSq SINE Alu 1 298 -15 430 282 43 19 chr9 41818756 41818965 -76043662 + L1ME4a LINE L1 5730 5943 -178 270 0 0 0 chr9 41819143 41819173 -76043454 + (CA)n Simple_repeat Simple_repeat 1 30 0 32 0 0 0 chr9 41820680 41820712 -76041915 + AT_rich Low_complexity Low_complexity 1 32 0 339 25 0 0 chr9 41820911 41820951 -76041676 + (TG)n Simple_repeat Simple_repeat 1 40 0 686 272 72 72 chr9 41820955 41821370 -76041257 - L2 LINE L2 -49 3264 2850 224 241 0 0 chr9 41822456 41822510 -76040117 + (TA)n Simple_repeat Simple_repeat 1 54 0 2092 90 0 48 chr9 41823047 41823357 -76039270 - AluSx SINE Alu -17 295 1 2517 49 3 0 chr9 41823632 41823936 -76038691 - AluY SINE Alu -6 305 1 2188 125 0 0 chr9 41824705 41825008 -76037619 + AluSq SINE Alu 1 303 -10 21 71 0 0 chr9 41825008 41825050 -76037577 + AT_rich Low_complexity Low_complexity 1 42 0 2417 176 58 0 chr9 41825522 41825949 -76036678 - MER70A LTR ERVL -20 452 1 2448 60 17 0 chr9 41826950 41827249 -76035378 - AluSp SINE Alu -9 304 1 2076 164 53 43 chr9 41827984 41828228 -76034399 + L1MDa LINE L1 1846 2086 -4454 2150 79 18 4 chr9 41828228 41828530 -76034097 - AluY SINE Alu 0 306 1 2076 164 53 43 chr9 41828530 41828870 -76033757 + L1MDa LINE L1 2086 2558 -3982 600 252 248 0 chr9 41829042 41829288 -76033339 + L1MD2 LINE L1 6043 6349 -10 329 304 66 33 chr9 41829332 41829513 -76033114 + L1MEc LINE L1 1630 1816 -4580 1534 207 21 24 chr9 41829546 41829928 -76032699 + L1MEc LINE L1 2521 2901 -3314 3993 162 18 34 chr9 41829991 41830779 -76031848 - LTR1 LTR ERV1 0 785 11 423 214 0 48 chr9 41830791 41830917 -76031710 + Charlie5 DNA MER1_type 2416 2535 -77 1953 216 54 14 chr9 41830918 41831512 -76031115 + L1MEc LINE L1 2896 3513 -2702 2227 151 31 26 chr9 41831557 41831661 -76030966 + L1M4c LINE L1 1 103 -6281 2136 93 3 10 chr9 41831661 41831961 -76030666 - AluY SINE Alu -13 298 1 2227 151 31 26 chr9 41831961 41832247 -76030380 + L1M4c LINE L1 103 393 -5991 255 152 22 0 chr9 41832233 41832279 -76030348 + L1MB4 LINE L1 5237 5283 -863 * 4081 187 19 54 chr9 41832315 41832346 -76030281 + L1MB4 LINE L1 5258 5289 -891 2165 146 128 13 chr9 41832346 41832730 -76029897 + MSTA LTR MaLR 1 428 0 4081 187 19 54 chr9 41832730 41833514 -76029113 + L1MB4 LINE L1 5289 6099 -81 2204 72 4 4 chr9 41833514 41833792 -76028835 + AluY SINE Alu 1 278 -33 414 0 0 0 chr9 41833797 41833843 -76028784 + (TA)n Simple_repeat Simple_repeat 2 47 0 4081 187 19 54 chr9 41833843 41833977 -76028650 + L1MB4 LINE L1 6103 6180 0 1162 206 23 68 chr9 41834152 41834462 -76028165 + MLT2B1 LTR ERVL 1 296 -118 27 29 0 0 chr9 41834532 41834566 -76028061 + AT_rich Low_complexity Low_complexity 1 34 0 468 296 106 12 chr9 41834684 41835340 -76027287 + L1MB7 LINE L1 2131 2928 -3218 3819 216 55 54 chr9 41835456 41835697 -76026930 + L1MB7 LINE L1 4146 4385 -1799 1809 91 95 0 chr9 41835697 41835949 -76026678 + L1PB3 LINE L1 5876 6151 -3 3819 216 55 54 chr9 41835949 41836120 -76026507 + L1MB7 LINE L1 4385 4554 -1630 207 0 0 0 chr9 41836120 41836143 -76026484 + (TTG)n Simple_repeat Simple_repeat 2 24 0 885 104 0 24 chr9 41836145 41836270 -76026357 - AluSp/q SINE Alu -18 295 174 3819 216 55 54 chr9 41836270 41837357 -76025270 + L1MB7 LINE L1 4554 5668 -516 2264 90 7 3 chr9 41837357 41837647 -76024980 + AluSg SINE Alu 1 291 -19 3819 216 55 54 chr9 41837647 41838165 -76024462 + L1MB7 LINE L1 5668 6184 0 572 259 24 0 chr9 41838329 41838495 -76024132 + L1M4 LINE L1 4222 4391 -1755 658 135 110 1 chr9 41838495 41838640 -76023987 + L1PB3 LINE L1 5876 6043 -125 2552 49 0 3 chr9 41838659 41838965 -76023662 - AluY SINE Alu -6 305 1 433 278 83 33 chr9 41839271 41839451 -76023176 + HAL1 LINE L1 8 196 -2311 1735 105 4 0 chr9 41839887 41840115 -76022512 - AluSc SINE Alu -14 295 67 291 281 48 68 chr9 41840117 41840263 -76022364 + LTR16C LTR ERVL 347 489 -2 296 309 27 37 chr9 41840316 41840504 -76022123 + HAL1 LINE L1 2031 2216 -291 3342 156 27 9 chr9 41840520 41841084 -76021543 + LTR69 LTR ERVL 8 581 -7 2287 117 0 0 chr9 41841335 41841777 -76020850 + AluSc SINE Alu 1 442 0 3524 172 5 4 chr9 41842143 41842696 -76019931 - MER41D LTR ERV1 -2 555 2 24 0 0 0 chr9 41842893 41842917 -76019710 + AT_rich Low_complexity Low_complexity 1 24 0 2087 115 37 0 chr9 41843313 41843431 -76019196 + AluSc SINE Alu 3 115 -194 234 0 0 0 chr9 41843431 41843457 -76019170 + (CA)n Simple_repeat Simple_repeat 2 27 0 2087 115 37 0 chr9 41843457 41843634 -76018993 + AluSc SINE Alu 115 309 0 205 261 0 0 chr9 41843718 41843764 -76018863 + L3 LINE CR1 1426 1471 -106 2421 60 3 13 chr9 41843788 41844089 -76018538 + AluY SINE Alu 1 298 -13 1015 278 115 17 chr9 41845099 41845516 -76017111 - MLT1E2 LTR MaLR -58 568 111 2630 55 0 0 chr9 41845844 41846154 -76016473 + AluY SINE Alu 1 310 -1 2111 79 52 24 chr9 41846454 41846745 -76015882 + AluY SINE Alu 1 299 -12 749 255 85 88 chr9 41846773 41847054 -76015573 + MLT1I LTR MaLR 54 335 -74 2402 96 3 0 chr9 41847054 41847356 -76015271 - AluSg SINE Alu -7 303 1 749 255 85 88 chr9 41847356 41847427 -76015200 + MLT1I LTR MaLR 335 405 -4 1831 188 65 31 chr9 41847744 41848159 -76014468 + MLT2B1 LTR ERVL 1 429 -91 3168 182 3 46 chr9 41848246 41848842 -76013785 + ERVL LTR ERVL 4814 5383 -381 2516 65 0 7 chr9 41848842 41849151 -76013476 - AluY SINE Alu -4 307 1 3168 182 3 46 chr9 41849151 41849186 -76013441 + ERVL LTR ERVL 5383 5418 -346 327 85 0 0 chr9 41849190 41849237 -76013390 + (TG)n Simple_repeat Simple_repeat 2 48 0 311 342 83 22 chr9 41849392 41849620 -76013007 - L2 LINE L2 -2919 395 154 244 308 131 0 chr9 41850593 41850723 -76011904 + MIR3 SINE MIR 56 202 -6 724 150 176 13 chr9 41851618 41851771 -76010856 + L1MB5 LINE L1 466 643 -6846 721 274 15 75 chr9 41851803 41852215 -76010412 + L1MB5 LINE L1 1173 1559 -5930 2218 255 79 26 chr9 41852221 41853040 -76009587 + L1MB5 LINE L1 2565 3427 -4138 563 261 29 19 chr9 41853018 41853225 -76009402 + L1MB5 LINE L1 3769 3977 -3588 * 1069 194 35 40 chr9 41853249 41853589 -76009038 + MSTB1 LTR MaLR 4 432 0 1409 217 68 28 chr9 41853591 41853704 -76008923 + L1MB5 LINE L1 3974 4081 -3484 2427 55 0 19 chr9 41853704 41854012 -76008615 + AluY SINE Alu 1 302 -9 1409 217 68 28 chr9 41854012 41854322 -76008305 + L1MB5 LINE L1 4081 4414 -3151 2466 80 0 0 chr9 41854322 41854621 -76008006 + AluSx SINE Alu 1 299 -13 882 222 22 17 chr9 41854621 41854851 -76007776 + L1MB5 LINE L1 4770 5000 -2565 * 6752 201 20 14 chr9 41854844 41856348 -76006279 - L1PB2 LINE L1 -2236 5329 3817 7052 170 9 17 chr9 41856349 41856802 -76005825 + L1PB2 LINE L1 5348 5803 -1767 2176 135 0 3 chr9 41856802 41857114 -76005513 + AluSx SINE Alu 1 311 -1 7052 170 9 17 chr9 41857114 41858336 -76004291 + L1PB2 LINE L1 5803 7005 -565 2404 80 0 6 chr9 41858377 41858690 -76003937 - AluY SINE Alu 0 311 1 4228 92 21 9 chr9 41858690 41859263 -76003364 + L1PB2 LINE L1 6989 7568 -2 6766 192 47 31 chr9 41859269 41859676 -76002951 + L1MB5 LINE L1 4979 5378 -2215 2035 121 0 36 chr9 41859676 41859982 -76002645 + AluSg SINE Alu 1 295 -15 6766 192 47 31 chr9 41859982 41862139 -76000488 + L1MB5 LINE L1 5378 7587 -6 6344 61 2 24 chr9 41862224 41863616 -75999011 + L1PA7 LINE L1 4774 6134 -20 285 29 0 0 chr9 41863616 41863650 -75998977 + (TG)n Simple_repeat Simple_repeat 2 35 0 366 325 43 11 chr9 41863658 41863846 -75998781 + L1M4 LINE L1 4260 4453 -1693 23 33 0 0 chr9 41864258 41864288 -75998339 + AT_rich Low_complexity Low_complexity 1 30 0 2294 88 0 14 chr9 41864311 41864606 -75998021 + AluY SINE Alu 1 291 -20 22 35 0 0 chr9 41865180 41865209 -75997418 + AT_rich Low_complexity Low_complexity 1 29 0 2570 49 0 0 chr9 41866110 41866416 -75996211 - AluY SINE Alu -5 306 1 306 206 31 19 chr9 41866491 41866589 -75996038 - L1ME LINE L1 -355 5766 5668 2469 62 0 13 chr9 41866589 41866894 -75995733 - AluY SINE Alu -10 301 1 306 206 31 19 chr9 41866894 41866927 -75995700 - L1ME LINE L1 -453 5668 5637 2474 55 3 3 chr9 41867077 41867387 -75995240 - AluY SINE Alu -1 310 1 446 194 21 11 chr9 41867643 41867736 -75994891 + MER20 DNA MER1_type 1 94 -125 2233 66 3 35 chr9 41868549 41868867 -75993760 + AluY SINE Alu 1 308 -3 4309 190 50 30 chr9 41868881 41870512 -75992115 - L1MB2 LINE L1 -18 6389 4791 2032 127 0 10 chr9 41870512 41870831 -75991796 - AluJb SINE Alu 0 312 1 4309 190 50 30 chr9 41870831 41871205 -75991422 - L1MB2 LINE L1 -1616 4791 4340 2373 55 3 35 chr9 41871205 41871515 -75991112 + AluY SINE Alu 1 300 -11 4309 190 50 30 chr9 41871515 41871545 -75991082 - L1MB2 LINE L1 -2067 4340 4312 39604 60 7 2 chr9 41871554 41877676 -75984951 - L1PA5 LINE L1 0 6154 2 308 191 26 29 chr9 41877672 41877765 -75984862 - L1MB2 LINE L1 -2058 4324 4233 * 5018 232 52 29 chr9 41877815 41878747 -75983880 - L1MB2 LINE L1 -2134 4248 3339 2204 101 7 0 chr9 41878747 41879043 -75983584 - AluY SINE Alu -13 298 1 5018 232 52 29 chr9 41879043 41880313 -75982314 - L1MB2 LINE L1 -3043 3339 2052 353 268 70 66 chr9 41880315 41880558 -75982069 - L1MB2 LINE L1 -5896 417 174 5224 171 10 15 chr9 41881348 41882411 -75980216 + L1 LINE L1 3510 4567 -1579 2081 93 0 4 chr9 41882486 41882764 -75979863 + AluSg SINE Alu 1 277 -33 1386 177 14 7 chr9 41883278 41883561 -75979066 + MER49 LTR ERV1 1 285 -638 1065 249 39 21 chr9 41883628 41883958 -75978669 + MER4D LTR ERV1 568 903 0 251 319 33 66 chr9 41884315 41884346 -75978281 + L2 LINE L2 2199 2229 -1085 2024 137 7 3 chr9 41884346 41884638 -75977989 - AluSc SINE Alu -16 293 1 251 319 33 66 chr9 41884638 41884847 -75977780 + L2 LINE L2 2229 2431 -883 919 209 72 11 chr9 41885236 41885660 -75976967 - MLT1D LTR MaLR -4 501 5 448 332 93 37 chr9 41885832 41886208 -75976419 - L1MC4 LINE L1 -906 6987 6479 284 242 85 7 chr9 41886397 41886550 -75976077 - L1MC4a LINE L1 -1577 6231 6067 264 217 28 38 chr9 41886562 41886668 -75975959 + (TG)n Simple_repeat Simple_repeat 2 106 0 193 175 8 56 chr9 41886689 41886815 -75975812 + (TG)n Simple_repeat Simple_repeat 1 120 0 195 138 23 46 chr9 41886904 41886991 -75975636 + (TG)n Simple_repeat Simple_repeat 2 86 0 353 167 7 61 chr9 41887055 41887515 -75975112 + (TG)n Simple_repeat Simple_repeat 1 434 0 331 199 20 40 chr9 41887534 41887839 -75974788 + (TG)n Simple_repeat Simple_repeat 1 298 0 1701 236 106 37 chr9 41888067 41888746 -75973881 + L1MCa LINE L1 2 727 -5699 1227 30 0 0 chr9 41888747 41888881 -75973746 + AluY SINE Alu 1 134 -177 2378 64 20 7 chr9 41888882 41889180 -75973447 + AluY SINE Alu 1 302 -9 285 89 22 0 chr9 41889722 41889767 -75972860 - Alu SINE Alu -19 281 236 2506 60 0 0 chr9 41890697 41890997 -75971630 + AluY SINE Alu 1 300 -11 1720 209 82 19 chr9 41891000 41891697 -75970930 - L1MCb LINE L1 -4851 1194 634 29 28 0 0 chr9 41891697 41891733 -75970894 + AT_rich Low_complexity Low_complexity 1 36 0 2041 141 10 0 chr9 41892062 41892367 -75970260 + AluSx SINE Alu 1 308 -4 2099 110 0 32 chr9 41892963 41893271 -75969356 + AluY SINE Alu 1 298 -13 1521 211 64 44 chr9 41894587 41895043 -75967584 - LTR40c LTR ERVL 0 465 1 238 329 14 0 chr9 41895143 41895216 -75967411 + MIR3 SINE MIR 126 199 -9 680 194 0 61 chr9 41895300 41895465 -75967162 + MER3 DNA MER1_type 5 159 -50 2323 77 0 62 chr9 41895468 41895791 -75966836 - AluY SINE Alu -8 303 1 1194 262 122 17 chr9 41896149 41896672 -75965955 - LTR48B LTR ERV1 -2 642 65 2534 63 0 0 chr9 41896673 41896974 -75965653 + AluY SINE Alu 1 301 -10 562 159 38 8 chr9 41897134 41897266 -75965361 + LTR37B LTR ERV1 333 468 0 415 324 112 22 chr9 41897343 41897800 -75964827 - L1M4 LINE L1 -991 5155 4658 598 231 100 6 chr9 41897979 41898139 -75964488 + MER5B DNA MER1_type 2 176 -2 2109 137 16 0 chr9 41900026 41900333 -75962294 + AluSx SINE Alu 1 312 0 2191 98 14 0 chr9 41900336 41900623 -75962004 + AluY SINE Alu 20 310 -1 2331 104 0 0 chr9 41900625 41900932 -75961695 + AluSq SINE Alu 1 307 -6 392 231 68 41 chr9 41901481 41901628 -75960999 - MER58A DNA MER1_type -29 195 45 301 333 0 0 chr9 41903079 41903181 -75959446 - MER94 DNA DNA -32 102 1 1764 151 112 17 chr9 41904073 41904395 -75958232 + MLT2D LTR ERVL 17 378 -36 369 75 0 0 chr9 41904395 41904448 -75958179 + (CA)n Simple_repeat Simple_repeat 2 54 0 1764 151 112 17 chr9 41904448 41904483 -75958144 + MLT2D LTR ERVL 378 408 -6 21 36 0 0 chr9 41904687 41904715 -75957912 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr9 41904799 41904822 -75957805 + AT_rich Low_complexity Low_complexity 1 23 0 1306 180 141 0 chr9 41906034 41906289 -75956338 + AluJb SINE Alu 1 291 -11 440 219 48 119 chr9 41907705 41907915 -75954712 + MER58A DNA MER1_type 1 195 -29 2096 122 3 3 chr9 41908462 41908765 -75953862 - AluSq SINE Alu -8 305 3 1904 100 77 0 chr9 41908770 41909029 -75953598 - AluY SINE Alu -13 298 20 2066 136 16 3 chr9 41909032 41909340 -75953287 - AluSx SINE Alu 0 312 1 551 231 100 6 chr9 41911231 41911391 -75951236 - MER5B DNA MER1_type -2 176 2 416 310 85 21 chr9 41911570 41911899 -75950728 + L1M4 LINE L1 4658 5007 -1139 604 144 38 8 chr9 41912104 41912236 -75950391 - LTR37B LTR ERV1 0 468 333 285 273 13 0 chr9 41912288 41912365 -75950262 + L2 LINE L2 3186 3263 -9 229 300 55 36 chr9 41913395 41913505 -75949122 + MIR SINE MIR 32 143 -119 518 193 201 31 chr9 41914194 41914285 -75948342 - LTR37A LTR ERV1 -13 413 339 2337 189 127 17 chr9 41914285 41914925 -75947702 - MER67C LTR ERV1 0 710 1 518 193 201 31 chr9 41914925 41915092 -75947535 - LTR37A LTR ERV1 -87 339 111 777 173 189 86 chr9 41915660 41915948 -75946679 - LTR37A LTR ERV1 0 426 90 2491 74 0 3 chr9 41915948 41916258 -75946369 + AluY SINE Alu 1 309 -2 777 173 189 86 chr9 41916258 41916340 -75946287 - LTR37A LTR ERV1 -336 90 18 1915 144 3 3 chr9 41917010 41917317 -75945310 - AluSx SINE Alu 0 308 2 853 219 127 4 chr9 41917384 41917644 -75944983 - LTR37A LTR ERV1 -57 369 78 1255 182 87 33 chr9 41918979 41919314 -75943313 + MLT1A1 LTR MaLR 11 363 -2 641 250 106 40 chr9 41920046 41920332 -75942295 + MER93b LTR ERV1 92 370 -3 2265 106 0 3 chr9 41920410 41920722 -75941905 - AluY SINE Alu 0 311 1 6833 177 20 21 chr9 41921279 41922403 -75940224 - L1PA15 LINE L1 -2 6163 5017 1529 151 81 28 chr9 41922403 41922567 -75940060 - AluJo SINE Alu -12 300 113 375 23 0 0 chr9 41922567 41922611 -75940016 + (TTA)n Simple_repeat Simple_repeat 2 45 0 1529 151 81 28 chr9 41922611 41922730 -75939897 - AluJo SINE Alu -199 113 2 6833 177 20 21 chr9 41922730 41923815 -75938812 - L1PA15 LINE L1 -1148 5017 3933 1512 215 111 35 chr9 41923905 41924417 -75938210 + MLT1E2 LTR MaLR 11 561 -65 405 0 0 0 chr9 41924590 41924635 -75937992 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 1370 109 0 43 chr9 41924635 41924846 -75937781 + AluSq SINE Alu 3 204 -109 256 132 59 0 chr9 41924852 41924920 -75937707 + (TA)n Simple_repeat Simple_repeat 2 73 0 879 167 105 29 chr9 41925228 41925438 -75937189 + MLT1B LTR MaLR 1 226 -164 26 0 0 0 chr9 41925581 41925607 -75937020 + AT_rich Low_complexity Low_complexity 1 26 0 839 194 14 28 chr9 41925607 41925824 -75936803 - L1MA9 LINE L1 -25 6287 6074 2257 92 0 29 chr9 41926619 41926925 -75935702 + AluY SINE Alu 1 297 -14 1491 164 47 60 chr9 41927617 41927916 -75934711 - AluJb SINE Alu -17 295 1 21 0 0 0 chr9 41928572 41928593 -75934034 + AT_rich Low_complexity Low_complexity 1 21 0 2041 141 10 0 chr9 41930406 41930711 -75931916 + AluSx SINE Alu 1 308 -4 2103 89 0 40 chr9 41931299 41931602 -75931025 + AluY SINE Alu 1 291 -20 2413 77 0 10 chr9 41932681 41932992 -75929635 - AluY SINE Alu -3 308 1 439 193 184 0 chr9 41932996 41933110 -75929517 + MER58C DNA MER1_type 81 215 0 2173 64 44 24 chr9 41934622 41934920 -75927707 + AluY SINE Alu 1 304 -7 2368 67 7 0 chr9 41935440 41935738 -75926889 + AluY SINE Alu 1 300 -11 2743 91 3 3 chr9 41937006 41937370 -75925257 - THE1B LTR MaLR 0 364 1 204 40 0 0 chr9 41937546 41937571 -75925056 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2404 53 0 0 chr9 41937574 41937856 -75924771 - AluY SINE Alu -29 282 1 219 233 0 0 chr9 41938333 41938376 -75924251 + GA-rich Low_complexity Low_complexity 3 45 0 786 198 31 5 chr9 41939189 41939381 -75923246 - L1 LINE L1 -1412 4734 4538 185 196 103 112 chr9 41940466 41940573 -75922054 + L3 LINE CR1 1469 1574 -3 614 265 118 0 chr9 41940623 41940827 -75921800 - MIR SINE MIR -13 249 22 624 274 24 0 chr9 41940842 41941006 -75921621 + MER5A DNA MER1_type 17 184 -5 2424 89 0 0 chr9 41941571 41941873 -75920754 - AluY SINE Alu -9 302 1 22 35 0 0 chr9 41943434 41943463 -75919164 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr9 41943857 41943881 -75918746 + AT_rich Low_complexity Low_complexity 1 24 0 2377 94 0 7 chr9 41944218 41944527 -75918100 + AluSc SINE Alu 1 307 -2 240 311 133 22 chr9 41944982 41945117 -75917510 - MIR3 SINE MIR -17 191 42 3594 178 45 21 chr9 41945290 41945771 -75916856 + L1MCa LINE L1 49 556 -5870 275 26 51 0 chr9 41945771 41945810 -75916817 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 3594 178 45 21 chr9 41945810 41946086 -75916541 + L1MCa LINE L1 556 824 -5602 464 209 18 27 chr9 41946092 41946202 -75916425 + FLAM_C SINE Alu 22 130 -13 1097 161 0 0 chr9 41946244 41946406 -75916221 + AluJb SINE Alu 142 303 -9 3395 119 91 56 chr9 41946410 41946458 -75916169 + L1MCa LINE L1 836 881 -5545 2348 86 0 7 chr9 41946458 41946762 -75915865 + AluY SINE Alu 10 311 0 3395 119 91 56 chr9 41946762 41947355 -75915272 + L1MCa LINE L1 881 1452 -4974 2141 117 3 3 chr9 41947355 41947645 -75914982 - AluSp SINE Alu -23 290 1 3395 119 91 56 chr9 41947645 41947780 -75914847 + L1MCa LINE L1 1452 1646 -4780 180 0 0 0 chr9 41947780 41947800 -75914827 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 3395 119 91 56 chr9 41947800 41947843 -75914784 + L1MCa LINE L1 1646 1686 -4740 1575 149 97 49 chr9 41947997 41948089 -75914538 + MER47A DNA MER2_type 1 87 -2236 2197 88 0 7 chr9 41948089 41948415 -75914212 - AluSc SINE Alu 0 324 1 1575 149 97 49 chr9 41948415 41948670 -75913957 + MER47A DNA MER2_type 87 366 0 661 147 0 0 chr9 41948885 41948994 -75913633 + FRAM SINE Alu 60 168 -8 242 245 0 19 chr9 41948999 41949052 -75913575 + MIR3 SINE MIR 147 198 -10 2258 97 0 19 chr9 41949535 41949846 -75912781 + AluSx SINE Alu 1 305 -7 668 164 9 0 chr9 41952126 41952236 -75910391 + AluJb SINE Alu 185 295 -17 2116 74 0 7 chr9 41952449 41952719 -75909908 - AluSx SINE Alu -44 268 1 323 313 62 36 chr9 41952817 41953012 -75909615 + MIR SINE MIR 2 201 -61 202 211 0 96 chr9 41953107 41953159 -75909468 - MER5B DNA MER1_type -100 78 32 6776 220 65 35 chr9 41953273 41953460 -75909167 - L1MD1 LINE L1 -21 6221 6041 2445 61 3 16 chr9 41953460 41953770 -75908857 + AluY SINE Alu 1 306 -5 6776 220 65 35 chr9 41953770 41956124 -75906503 - L1MD1 LINE L1 -201 6041 3522 2321 108 0 6 chr9 41956124 41956438 -75906189 + AluSx SINE Alu 1 312 0 6776 220 65 35 chr9 41956438 41957503 -75905124 - L1MD1 LINE L1 -2720 3522 2490 334 131 0 0 chr9 41957508 41957569 -75905058 - L1MC2 LINE L1 -10 6334 6274 1239 246 47 0 chr9 41957575 41957962 -75904665 - L1MCa LINE L1 -2252 4312 3908 2856 244 58 60 chr9 41957970 41958745 -75903882 - L1MCa LINE L1 -3213 3351 2575 7265 47 13 22 chr9 41958745 41959806 -75902821 - L1PA5 LINE L1 -3 6151 5094 2856 244 58 60 chr9 41959806 41960867 -75901760 - L1MCa LINE L1 -3989 2575 1513 2520 46 0 7 chr9 41960867 41961171 -75901456 + AluY SINE Alu 1 302 -9 2856 244 58 60 chr9 41961171 41961874 -75900753 - L1MCa LINE L1 -5051 1513 810 2475 41 6 22 chr9 41961874 41962190 -75900437 - AluY SINE Alu 0 311 1 2856 244 58 60 chr9 41962190 41962891 -75899736 - L1MCa LINE L1 -5754 810 1 2460 219 116 29 chr9 41962867 41963569 -75899058 - L1MDa LINE L1 -3649 2915 2276 * 2340 70 13 0 chr9 41963569 41963870 -75898757 - AluY SINE Alu -6 305 1 2460 219 116 29 chr9 41963870 41964463 -75898164 - L1MDa LINE L1 -4288 2276 1344 587 233 83 0 chr9 41964451 41964584 -75898043 - L1MDa LINE L1 -6242 301 158 * 340 252 82 22 chr9 41966517 41966652 -75895975 - MER103 DNA DNA -10 156 14 2037 127 3 0 chr9 41966971 41967289 -75895338 + AluSx SINE Alu 1 312 0 1613 79 23 0 chr9 41968091 41968306 -75894321 - AluSg/x SINE Alu -10 302 83 22 35 0 0 chr9 41969228 41969257 -75893370 + AT_rich Low_complexity Low_complexity 1 29 0 342 252 63 0 chr9 41969634 41969761 -75892866 + L1M4 LINE L1 2219 2353 -3793 2412 66 0 10 chr9 41969877 41970180 -75892447 + AluY SINE Alu 1 300 -11 510 204 0 0 chr9 41970180 41970288 -75892339 + (TG)n Simple_repeat Simple_repeat 2 109 0 22 0 0 0 chr9 41970396 41970418 -75892209 + AT_rich Low_complexity Low_complexity 1 22 0 608 274 89 63 chr9 41970668 41971028 -75891599 + L1M4 LINE L1 4175 4561 -1585 944 200 47 33 chr9 41971028 41971243 -75891384 + MER20 DNA MER1_type 1 218 -1 608 274 89 63 chr9 41971243 41971520 -75891107 + L1M4 LINE L1 4561 4829 -1317 2318 91 0 3 chr9 41971598 41971894 -75890733 + AluSg SINE Alu 1 295 -15 36 0 0 0 chr9 41972061 41972097 -75890530 + AT_rich Low_complexity Low_complexity 1 36 0 1322 168 50 0 chr9 41972948 41973210 -75889417 + L1MA4 LINE L1 6015 6289 -11 183 211 0 26 chr9 41973606 41973644 -75888983 - MIR SINE MIR -129 79 43 245 346 19 39 chr9 41973728 41973832 -75888795 + L2 LINE L2 3148 3249 -23 2071 149 0 0 chr9 41973840 41974148 -75888479 - AluJb SINE Alu -4 308 1 1092 219 98 16 chr9 41974497 41974812 -75887815 + MER58B DNA MER1_type 1 341 0 274 264 97 51 chr9 41975311 41975527 -75887100 - HAL1b LINE L1 -690 658 433 230 302 42 31 chr9 41975678 41975774 -75886853 - HAL1b LINE L1 -861 487 391 1359 224 13 31 chr9 41975986 41976303 -75886324 + LTR40b LTR ERVL 152 462 0 413 239 17 17 chr9 41976846 41977022 -75885605 + CT-rich Low_complexity Low_complexity 4 179 0 1397 187 23 4 chr9 41977712 41977969 -75884658 + AluJo SINE Alu 38 299 -13 3218 230 74 46 chr9 41978187 41978808 -75883819 + L1MC4 LINE L1 6459 7061 -981 2268 85 0 0 chr9 41978808 41979115 -75883512 - AluY SINE Alu 0 307 1 3218 230 74 46 chr9 41979115 41979679 -75882948 + L1MC4 LINE L1 7061 7678 -364 453 36 0 0 chr9 41979739 41979794 -75882833 + (TG)n Simple_repeat Simple_repeat 1 55 0 727 268 163 0 chr9 41979820 41980066 -75882561 + L2 LINE L2 2266 2551 -763 1884 155 0 20 chr9 41980658 41980961 -75881666 - AluSx SINE Alu -15 297 1 2084 115 0 13 chr9 41981951 41982263 -75880364 - AluSc SINE Alu 0 309 2 205 253 0 0 chr9 41982295 41982348 -75880279 - MIR SINE MIR -68 140 99 358 337 37 6 chr9 41983246 41983409 -75879218 + MER5A DNA MER1_type 16 183 -6 336 344 37 6 chr9 41984793 41984956 -75877671 + MER5A DNA MER1_type 16 183 -6 332 190 2 136 chr9 41986232 41986359 -75876268 - FLAM SINE Alu 0 133 51 2115 96 65 0 chr9 41986559 41986850 -75875777 + AluSg SINE Alu 1 310 0 21 0 0 0 chr9 41986885 41986906 -75875721 + AT_rich Low_complexity Low_complexity 1 21 0 3129 268 73 7 chr9 41987851 41988699 -75873928 + L1MB8 LINE L1 10 913 -5946 1336 290 60 13 chr9 41988683 41989175 -75873452 + L1MB8 LINE L1 1698 2232 -4727 * 1332 114 13 13 chr9 41989175 41989403 -75873224 + L1MA4 LINE L1 6072 6299 -1 1336 290 60 13 chr9 41989403 41989597 -75873030 + L1MB8 LINE L1 2232 2416 -4543 21 0 0 0 chr9 41989909 41989930 -75872697 + AT_rich Low_complexity Low_complexity 1 21 0 234 226 69 39 chr9 41989982 41990084 -75872543 + L1MB8 LINE L1 2675 2779 -4178 5580 213 49 19 chr9 41990102 41992448 -75870179 + L1MB4 LINE L1 3767 6173 -7 8135 237 51 33 chr9 41992456 41995470 -75867157 + L1MB8 LINE L1 2801 5869 -1088 3626 198 19 69 chr9 41995471 41995576 -75867051 + L1MB8 LINE L1 6003 6112 -877 2429 85 0 0 chr9 41995576 41995882 -75866745 + AluY SINE Alu 2 307 -4 3626 198 19 69 chr9 41995882 41996808 -75865819 + L1MB8 LINE L1 6112 6989 0 2431 76 0 0 chr9 41998028 41998332 -75864295 + AluY SINE Alu 1 304 -7 21 89 0 0 chr9 41999129 41999185 -75863442 + AT_rich Low_complexity Low_complexity 1 56 0 23 54 0 0 chr9 41999322 41999359 -75863268 + AT_rich Low_complexity Low_complexity 1 37 0 2488 43 20 7 chr9 42001320 42001619 -75861008 + AluY SINE Alu 1 303 -8 2249 92 3 0 chr9 42002400 42002683 -75859944 - AluSg SINE Alu -26 284 1 1518 211 64 44 chr9 42003074 42003530 -75859097 - LTR40c LTR ERVL 0 465 1 218 343 14 0 chr9 42003630 42003703 -75858924 + MIR3 SINE MIR 126 199 -9 925 164 0 89 chr9 42003787 42003955 -75858672 + MER3 DNA MER1_type 5 150 -59 2347 81 0 29 chr9 42003955 42004265 -75858362 - AluY SINE Alu -10 301 1 925 164 0 89 chr9 42004265 42004321 -75858306 + MER3 DNA MER1_type 150 209 0 2401 76 0 16 chr9 42005097 42005401 -75857226 + AluSc SINE Alu 1 299 -10 1546 234 37 31 chr9 42005489 42005943 -75856684 - MER31A LTR ERV1 -27 458 2 26 50 0 0 chr9 42006793 42006833 -75855794 + AT_rich Low_complexity Low_complexity 1 40 0 243 143 0 0 chr9 42007539 42007581 -75855046 - L1MA7 LINE L1 -64 6227 6186 1994 147 0 6 chr9 42007825 42008137 -75854490 - AluSx SINE Alu -2 310 1 2235 56 4 0 chr9 42008466 42008768 -75853859 - AluY SINE Alu 0 319 17 295 231 51 0 chr9 42008814 42008892 -75853735 - L1MB4 LINE L1 -49 6131 6050 2051 93 43 0 chr9 42009094 42009374 -75853253 - AluY SINE Alu -19 292 1 804 219 62 32 chr9 42010127 42010614 -75852013 - MER34B LTR ERV1 -1 564 1 197 402 56 9 chr9 42010718 42010825 -75851802 - MER5B DNA MER1_type -12 166 55 2517 47 0 0 chr9 42010993 42011289 -75851338 + AluY SINE Alu 1 296 -15 1415 146 115 56 chr9 42011732 42012019 -75850608 + AluJo SINE Alu 1 304 -8 28 0 0 0 chr9 42014048 42014076 -75848551 + AT_rich Low_complexity Low_complexity 1 28 0 3943 96 24 21 chr9 42015237 42015855 -75846772 - L1MA1 LINE L1 0 6302 5683 242 302 74 33 chr9 42016701 42016882 -75845745 - MIR SINE MIR -49 213 27 186 224 0 0 chr9 42017017 42017066 -75845561 + (TA)n Simple_repeat Simple_repeat 1 49 0 1274 224 78 39 chr9 42017078 42017516 -75845111 + L1ME2 LINE L1 39 493 -5903 457 223 45 110 chr9 42017519 42017608 -75845019 - MER106B DNA MER1_type 0 1059 966 1983 101 0 57 chr9 42017608 42017938 -75844689 - AluY SINE Alu 0 316 4 457 223 45 110 chr9 42017938 42018106 -75844521 - MER106B DNA MER1_type -93 966 1 3091 241 87 68 chr9 42018107 42018363 -75844264 + L1ME2 LINE L1 514 764 -5632 2127 80 14 3 chr9 42018363 42018650 -75843977 + AluY SINE Alu 1 290 -21 3091 241 87 68 chr9 42018650 42020068 -75842559 + L1ME2 LINE L1 764 2220 -4176 3001 212 77 37 chr9 42020051 42021062 -75841565 + L1ME2 LINE L1 5176 6224 -9 * 195 129 0 0 chr9 42021064 42021095 -75841532 + (TATATG)n Simple_repeat Simple_repeat 5 35 0 276 79 0 0 chr9 42022103 42022141 -75840486 - L1M4b LINE L1 -6732 127 90 625 123 41 75 chr9 42022632 42022778 -75839849 - L1P LINE L1 -746 5410 5270 3562 124 33 5 chr9 42022778 42023357 -75839270 + L1PB4 LINE L1 5384 5978 -178 2328 48 0 55 chr9 42023374 42023684 -75838943 + AluY SINE Alu 1 293 -18 2511 53 0 28 chr9 42023801 42024121 -75838506 + AluY SINE Alu 1 311 0 24 0 0 0 chr9 42024645 42024669 -75837958 + AT_rich Low_complexity Low_complexity 1 24 0 1077 78 0 0 chr9 42025231 42025360 -75837267 - AluSg SINE Alu -21 291 163 694 82 0 0 chr9 42025365 42025462 -75837165 - AluSg SINE Alu -213 97 1 285 278 65 37 chr9 42026310 42026418 -75836209 + L3b LINE CR1 1290 1400 -183 23 0 0 0 chr9 42026866 42026889 -75835738 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr9 42026955 42026980 -75835647 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr9 42027216 42027245 -75835382 + AT_rich Low_complexity Low_complexity 1 29 0 2494 61 0 13 chr9 42027319 42027629 -75834998 - AluY SINE Alu -5 306 1 23 33 0 0 chr9 42027790 42027820 -75834807 + AT_rich Low_complexity Low_complexity 1 30 0 854 259 8 59 chr9 42028218 42028358 -75834269 - MIR SINE MIR -37 225 100 2882 142 23 16 chr9 42028358 42028844 -75833783 - LTR45B LTR ERV1 0 489 1 854 259 8 59 chr9 42028844 42028939 -75833688 - MIR SINE MIR -162 100 2 2447 63 0 0 chr9 42029031 42029316 -75833311 + AluY SINE Alu 3 287 -24 1023 223 33 101 chr9 42030890 42030928 -75831699 - MLT1A2 LTR MaLR -6 368 329 2377 79 0 16 chr9 42030928 42031244 -75831383 + AluY SINE Alu 1 311 0 1023 223 33 101 chr9 42031244 42031600 -75831027 - MLT1A2 LTR MaLR -45 329 1 338 58 39 0 chr9 42033442 42033494 -75829133 + (TTTTC)n Simple_repeat Simple_repeat 2 55 0 16798 210 31 13 chr9 42033827 42036988 -75825639 - L1PA15 LINE L1 -1 6815 3524 1978 63 93 4 chr9 42036988 42037258 -75825369 + AluY SINE Alu 1 294 -17 16798 210 31 13 chr9 42037258 42039506 -75823121 - L1PA15 LINE L1 -3292 3524 1319 251 211 28 42 chr9 42039863 42039934 -75822693 + LTR40c LTR ERVL 5 74 -391 3482 189 38 4 chr9 42039937 42040648 -75821979 + L1MB3 LINE L1 5447 6181 -2 1532 253 34 10 chr9 42040711 42041099 -75821528 + LTR40c LTR ERVL 63 459 -6 210 176 0 0 chr9 42043081 42043132 -75819495 + (TG)n Simple_repeat Simple_repeat 2 52 0 3736 148 105 29 chr9 42043137 42044526 -75818101 + pTR5 LTR ERV1 742 2606 0 348 143 0 0 chr9 42044532 42044602 -75818025 + (TG)n Simple_repeat Simple_repeat 2 71 0 2454 57 0 3 chr9 42044991 42045290 -75817337 - AluY SINE Alu -13 298 1 1875 134 71 34 chr9 42047141 42047492 -75815135 - THE1B LTR MaLR 0 364 1 988 304 116 20 chr9 42048121 42048643 -75813984 + L2 LINE L2 2432 3005 -308 943 230 0 0 chr9 42048647 42048821 -75813806 + MSTB LTR MaLR 5 178 -248 27 29 0 0 chr9 42049165 42049199 -75813428 + AT_rich Low_complexity Low_complexity 1 34 0 2224 105 0 7 chr9 42049299 42049605 -75813022 + AluSq SINE Alu 2 305 -8 502 219 48 119 chr9 42050153 42050363 -75812264 - MER58A DNA MER1_type -29 195 1 328 333 0 0 chr9 42051772 42051874 -75810753 - MER94 DNA DNA -32 102 1 1868 156 117 17 chr9 42052767 42053087 -75809540 + MLT2D LTR ERVL 17 378 -36 516 45 0 0 chr9 42053087 42053154 -75809473 + (CA)n Simple_repeat Simple_repeat 2 68 0 1868 156 117 17 chr9 42053154 42053193 -75809434 + MLT2D LTR ERVL 378 412 -2 21 36 0 0 chr9 42053393 42053421 -75809206 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr9 42053505 42053528 -75809099 + AT_rich Low_complexity Low_complexity 1 23 0 1249 191 141 0 chr9 42054747 42055003 -75807624 + AluJb SINE Alu 1 292 -10 653 258 113 19 chr9 42055452 42055665 -75806962 + MIR SINE MIR 30 262 0 214 244 0 0 chr9 42056151 42056196 -75806431 - L2 LINE L2 -2 3270 3226 1725 171 3 13 chr9 42056471 42056770 -75805857 - AluJo SINE Alu -16 296 1 291 307 118 8 chr9 42057044 42057171 -75805456 + MER5A DNA MER1_type 43 183 -6 1858 144 21 7 chr9 42057249 42057540 -75805087 + AluSx SINE Alu 6 300 -12 2688 215 74 22 chr9 42057572 42058302 -75804325 - L1ME1 LINE L1 -3 6163 5396 250 162 88 29 chr9 42058335 42058403 -75804224 - L1ME1 LINE L1 -1556 4590 4519 204 259 0 37 chr9 42058552 42058606 -75804021 + CT-rich Low_complexity Low_complexity 5 56 0 1751 158 42 3 chr9 42058752 42059037 -75803590 - AluJb SINE Alu -16 296 1 23 54 0 0 chr9 42059037 42059074 -75803553 + AT_rich Low_complexity Low_complexity 1 37 0 678 299 44 53 chr9 42059960 42060683 -75801944 + L1MEc LINE L1 1022 1738 -4658 23 54 0 0 chr9 42060754 42060791 -75801836 + AT_rich Low_complexity Low_complexity 1 37 0 759 272 85 21 chr9 42060976 42061417 -75801210 + L1MEc LINE L1 2134 2558 -3657 362 169 28 0 chr9 42061915 42061986 -75800641 + MER116 DNA Mariner 5 77 -3 675 348 112 16 chr9 42063239 42064045 -75798582 - L2 LINE L2 0 3313 2427 219 368 28 9 chr9 42064202 42064308 -75798319 - L2 LINE L2 -606 2708 2601 1499 164 74 0 chr9 42064910 42065179 -75797448 + 7SLRNA srpRNA srpRNA 24 312 -8 183 100 0 0 chr9 42065180 42065210 -75797417 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 181 367 0 0 chr9 42066637 42066686 -75795941 - L2 LINE L2 -20 3293 3245 311 280 28 9 chr9 42067476 42067583 -75795044 - MIR3 SINE MIR 0 208 100 2401 75 3 3 chr9 42068065 42068370 -75794257 + AluY SINE Alu 1 305 -6 2034 160 0 3 chr9 42068583 42068890 -75793737 - AluSx SINE Alu -6 306 1 24 32 0 0 chr9 42069730 42069761 -75792866 + AT_rich Low_complexity Low_complexity 1 31 0 192 318 220 8 chr9 42070298 42070430 -75792197 + MIR SINE MIR 53 212 -50 198 297 14 54 chr9 42071078 42071152 -75791475 - MIR SINE MIR -17 245 175 251 260 48 68 chr9 42071307 42071453 -75791174 + MIR SINE MIR 42 184 -78 289 336 49 7 chr9 42072292 42072435 -75790192 + MIR SINE MIR 22 170 -92 272 322 89 0 chr9 42072911 42073001 -75789626 + MIR SINE MIR 30 127 -81 2163 114 0 32 chr9 42073031 42073339 -75789288 + AluSx SINE Alu 1 298 -14 29 0 0 0 chr9 42073589 42073618 -75789009 + AT_rich Low_complexity Low_complexity 1 29 0 3786 154 39 22 chr9 42075373 42076088 -75786539 + LTR8A LTR ERV1 1 727 0 323 271 21 42 chr9 42076098 42076242 -75786385 - HERVS71 LTR ERV1 -3911 5067 4927 1990 140 72 4 chr9 42076335 42076942 -75785685 + MER50 LTR ERV1 12 711 -23 206 255 0 0 chr9 42078195 42078246 -75784381 + A-rich Low_complexity Low_complexity 1 51 0 1973 91 34 20 chr9 42079837 42080133 -75782494 + AluY SINE Alu 1 300 -11 441 268 54 0 chr9 42081626 42081738 -75780889 - MER8 DNA MER2_type -121 118 1 22 0 0 0 chr9 42082434 42082456 -75780171 + AT_rich Low_complexity Low_complexity 1 22 0 1581 132 0 0 chr9 42083051 42083270 -75779357 - AluSg/x SINE Alu -12 298 80 2116 69 45 21 chr9 42083545 42083835 -75778792 + AluY SINE Alu 1 297 -14 2412 61 7 0 chr9 42084359 42084654 -75777973 + AluY SINE Alu 1 297 -14 2722 91 6 3 chr9 42085928 42086291 -75776336 - THE1B LTR MaLR 0 364 1 2472 67 0 0 chr9 42086470 42086770 -75775857 - AluY SINE Alu -11 300 1 233 209 0 0 chr9 42087247 42087290 -75775337 + GA-rich Low_complexity Low_complexity 3 45 0 621 225 59 5 chr9 42088103 42088290 -75774337 - L1 LINE L1 -1412 4734 4538 185 196 103 112 chr9 42089362 42089469 -75773158 + L3 LINE CR1 1469 1574 -3 586 259 134 0 chr9 42089519 42089720 -75772907 - MIR SINE MIR -13 249 22 646 262 24 0 chr9 42089735 42089899 -75772728 + MER5A DNA MER1_type 17 184 -5 2421 69 0 19 chr9 42090472 42090789 -75771838 - AluY SINE Alu 0 311 1 2298 48 0 55 chr9 42090906 42091218 -75771409 - AluY SINE Alu -16 295 1 3474 119 33 3 chr9 42091235 42091813 -75770814 - L1PB4 LINE L1 -178 5978 5384 578 124 48 76 chr9 42091813 42091958 -75770669 + L1P LINE L1 5270 5410 -746 264 79 0 0 chr9 42092445 42092483 -75770144 + L1M4b LINE L1 90 127 -6732 2664 217 62 31 chr9 42093539 42094527 -75768100 - L1ME2 LINE L1 -9 6224 5196 1866 249 66 72 chr9 42094534 42095751 -75766876 - L1ME2 LINE L1 -4176 2220 1012 1051 245 68 43 chr9 42095766 42095950 -75766677 - L1ME2 LINE L1 -5431 965 787 2109 84 14 3 chr9 42095950 42096237 -75766390 - AluY SINE Alu -21 290 1 1051 245 68 43 chr9 42096237 42096493 -75766134 - L1ME2 LINE L1 -5609 787 514 411 239 51 96 chr9 42096494 42096659 -75765968 + MER106B DNA MER1_type 1 172 -887 2044 103 0 34 chr9 42096659 42096986 -75765641 + AluY SINE Alu 1 317 0 411 239 51 96 chr9 42096986 42097065 -75765562 + MER106B DNA MER1_type 172 1054 -5 1146 219 78 39 chr9 42097073 42097511 -75765116 - L1ME2 LINE L1 -5903 493 39 198 191 0 0 chr9 42097534 42097576 -75765051 + (TA)n Simple_repeat Simple_repeat 1 42 0 267 287 74 33 chr9 42097711 42097892 -75764735 + MIR SINE MIR 27 213 -49 3916 96 24 21 chr9 42098742 42099360 -75763267 + L1MA1 LINE L1 5683 6302 0 28 0 0 0 chr9 42100524 42100552 -75762075 + AT_rich Low_complexity Low_complexity 1 28 0 1455 144 116 49 chr9 42102569 42102854 -75759773 - AluJo SINE Alu -8 304 1 2414 61 0 0 chr9 42103297 42103593 -75759034 - AluY SINE Alu -15 296 1 198 402 56 9 chr9 42103761 42103868 -75758759 + MER5B DNA MER1_type 55 166 -12 640 235 135 23 chr9 42103980 42104449 -75758178 + MER34B LTR ERV1 1 564 -1 2289 92 3 10 chr9 42105202 42105506 -75757121 + AluY SINE Alu 1 302 -9 2075 115 28 3 chr9 42105506 42105827 -75756800 + L1PA16 LINE L1 5828 6156 -10 213 380 92 6 chr9 42107768 42107931 -75754696 + MIR3 SINE MIR 30 206 -2 1876 58 12 0 chr9 42108569 42108810 -75753817 - L1PA5 LINE L1 -2 6152 5909 346 224 12 0 chr9 42109341 42109426 -75753201 - MER96 DNA MER1_type? -89 86 1 2212 114 3 13 chr9 42110270 42110585 -75752042 + AluSx SINE Alu 1 312 0 4165 186 11 37 chr9 42111594 42112117 -75750510 - L1MA10 LINE L1 -39 6295 5760 3999 87 5 69 chr9 42112117 42112758 -75749869 - MER4A LTR ERV1 0 600 1 4165 186 11 37 chr9 42112758 42112948 -75749679 - L1MA10 LINE L1 -574 5760 5567 2560 36 0 13 chr9 42112948 42113250 -75749377 - AluY SINE Alu -13 298 1 4165 186 11 37 chr9 42113250 42113491 -75749136 - L1MA10 LINE L1 -767 5567 5364 295 29 0 0 chr9 42113508 42113543 -75749084 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 1212 67 0 0 chr9 42113543 42113692 -75748935 - AluY SINE Alu -28 283 135 588 165 31 17 chr9 42113692 42113838 -75748789 - L1M4 LINE L1 -766 5380 5227 * 1122 185 83 29 chr9 42113832 42114108 -75748519 + L1M4 LINE L1 4939 5229 -917 2358 91 0 0 chr9 42114245 42114541 -75748086 + AluSx SINE Alu 6 301 -11 2228 99 0 0 chr9 42114558 42114840 -75747787 + AluSc SINE Alu 5 286 -23 5844 63 1 12 chr9 42114865 42115583 -75747044 - L1PA8 LINE L1 -2 6170 5461 2115 129 0 23 chr9 42115635 42115945 -75746682 + AluSx SINE Alu 1 303 -9 23 0 0 0 chr9 42116081 42116104 -75746523 + AT_rich Low_complexity Low_complexity 1 23 0 2214 105 0 7 chr9 42116104 42116398 -75746229 - AluY SINE Alu -19 292 1 606 152 0 0 chr9 42117870 42117962 -75744665 - MER20 DNA MER1_type -127 92 1 195 263 12 100 chr9 42118616 42118696 -75743931 + L2 LINE L2 3241 3313 0 2243 171 28 21 chr9 42118777 42119250 -75743377 - MER31A LTR ERV1 -9 476 1 923 327 118 5 chr9 42120325 42120934 -75741693 + L2 LINE L2 2109 2786 -528 2442 130 42 12 chr9 42121138 42121545 -75741082 + MSTB1 LTR MaLR 14 432 0 2255 107 0 13 chr9 42122295 42122603 -75740024 + AluSc SINE Alu 1 304 -5 2280 110 43 48 chr9 42123067 42123459 -75739168 + L1MA4A LINE L1 5913 6302 -1 375 23 0 0 chr9 42124437 42124481 -75738146 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 1821 146 4 0 chr9 42124484 42124758 -75737869 - AluSg SINE Alu -35 275 1 845 314 41 35 chr9 42124984 42125494 -75737133 - L1ME3A LINE L1 -204 5966 5454 207 139 0 0 chr9 42125774 42125810 -75736817 + (CA)n Simple_repeat Simple_repeat 2 37 0 2342 77 0 0 chr9 42125834 42126119 -75736508 + AluY SINE Alu 22 306 -5 379 269 84 18 chr9 42126240 42126407 -75736220 + MIR SINE MIR 61 238 -24 2954 233 40 76 chr9 42126575 42126687 -75735940 - MER31A-int LTR ERV1 -110 4081 3967 2596 118 75 5 chr9 42126687 42127103 -75735524 + LTR56 LTR ERV1 1 445 0 2954 233 40 76 chr9 42127103 42127155 -75735472 - MER31A-int LTR ERV1 -224 3967 3915 2079 134 0 6 chr9 42127155 42127469 -75735158 - AluSx SINE Alu 0 312 1 2206 203 40 73 chr9 42127478 42128055 -75734572 - MER74A LTR ERVL 0 558 1 2954 233 40 76 chr9 42128055 42128153 -75734474 - MER31A-int LTR ERV1 -284 3907 3807 2256 97 3 3 chr9 42128153 42128461 -75734166 - AluY SINE Alu -3 308 1 2954 233 40 76 chr9 42128461 42129130 -75733497 - MER31A-int LTR ERV1 -384 3807 3172 2466 81 0 0 chr9 42129568 42129876 -75732751 + AluY SINE Alu 1 308 -3 3461 21 0 0 chr9 42129904 42130280 -75732347 - L1PA2 LINE L1 0 6155 5780 328 50 0 0 chr9 42130281 42130321 -75732306 + L1P LINE L1 1737 1776 -4370 455 281 48 0 chr9 42130324 42130470 -75732157 - L2 LINE L2 0 3313 3161 1907 204 104 7 chr9 42130486 42130904 -75731723 + MLT2B2 LTR ERVL 11 477 -38 309 51 0 0 chr9 42130904 42130943 -75731684 + (CA)n Simple_repeat Simple_repeat 2 40 0 1907 204 104 7 chr9 42130943 42130974 -75731653 + MLT2B2 LTR ERVL 477 504 -11 357 322 8 17 chr9 42131009 42131127 -75731500 - L2 LINE L2 -291 3022 2906 297 0 0 0 chr9 42131182 42131215 -75731412 + (CA)n Simple_repeat Simple_repeat 1 33 0 1819 201 74 39 chr9 42132007 42132495 -75730132 - MLT1D LTR MaLR 0 505 1 1575 193 6 39 chr9 42133420 42133461 -75729166 - L1PB4 LINE L1 0 6156 6115 2950 6 0 0 chr9 42133461 42133777 -75728850 - AluYb8 SINE Alu -2 316 1 1575 193 6 39 chr9 42133777 42134072 -75728555 - L1PB4 LINE L1 -41 6115 5831 1494 128 5 0 chr9 42134082 42134300 -75728327 - AluSg/x SINE Alu -5 307 89 22 35 0 0 chr9 42135903 42135932 -75726695 + AT_rich Low_complexity Low_complexity 1 29 0 2510 53 3 13 chr9 42137124 42137428 -75725199 - AluY SINE Alu -10 301 1 4142 123 16 6 chr9 42137428 42138054 -75724573 - L1PA13 LINE L1 -7 6156 5525 5734 159 8 8 chr9 42138054 42139028 -75723599 - L1PA13 LINE L1 -1784 4362 3389 248 65 0 0 chr9 42139130 42139161 -75723466 + (A)n Simple_repeat Simple_repeat 1 31 0 11739 201 33 13 chr9 42139178 42139284 -75723343 + L1PA13 LINE L1 1173 1275 -5522 183 80 0 0 chr9 42139284 42139309 -75723318 + (CTG)n Simple_repeat Simple_repeat 1 25 0 11739 201 33 13 chr9 42139309 42142579 -75720048 + L1PA13 LINE L1 1275 4617 -2180 5861 114 34 20 chr9 42142580 42143734 -75718893 + L1PA13 LINE L1 5647 6814 0 448 241 29 51 chr9 42144180 42144317 -75718310 - MER5B DNA MER1_type -1 177 44 1589 226 117 40 chr9 42144481 42144784 -75717843 + LTR40b LTR ERVL 1 279 -183 2262 98 0 0 chr9 42144784 42145071 -75717556 + AluY SINE Alu 1 287 -24 201 26 79 0 chr9 42145078 42145116 -75717511 + (TAA)n Simple_repeat Simple_repeat 2 42 0 1589 226 117 40 chr9 42145116 42145233 -75717394 + LTR40b LTR ERVL 284 462 0 1714 178 7 23 chr9 42145567 42145876 -75716751 + AluJb SINE Alu 3 306 -6 878 172 0 0 chr9 42146203 42146325 -75716302 + FLAM_C SINE Alu 3 124 -9 1885 69 0 4 chr9 42146505 42146737 -75715890 + L1PA8 LINE L1 5940 6170 -2 40 21 0 0 chr9 42148521 42148568 -75714059 + AT_rich Low_complexity Low_complexity 1 47 0 2105 98 14 0 chr9 42148898 42149199 -75713428 + AluSx SINE Alu 1 305 0 392 290 83 7 chr9 42149553 42149698 -75712929 - MIR3 SINE MIR -24 184 29 784 276 13 0 chr9 42150097 42150329 -75712298 + L1MC1 LINE L1 4863 5097 -1049 * 1112 156 0 0 chr9 42150324 42150504 -75712123 + L1MC/D LINE L1 5615 5794 -539 6405 164 15 9 chr9 42150507 42150555 -75712072 + L1MC1 LINE L1 5117 5163 -1170 2086 132 3 0 chr9 42150555 42150851 -75711776 + AluSx SINE Alu 1 297 -15 6405 164 15 9 chr9 42150851 42151272 -75711355 + L1MC1 LINE L1 5163 5580 -753 2531 46 0 7 chr9 42151272 42151575 -75711052 + AluY SINE Alu 1 301 -10 6405 164 15 9 chr9 42151575 42152302 -75710325 + L1MC1 LINE L1 5580 6327 -6 2835 19 3 0 chr9 42152325 42152642 -75709985 + AluYb8 SINE Alu 1 318 0 2230 78 0 3 chr9 42152948 42153258 -75709369 + AluY SINE Alu 1 309 0 186 43 0 0 chr9 42153442 42153465 -75709162 + (A)n Simple_repeat Simple_repeat 1 23 0 840 83 8 8 chr9 42153510 42153631 -75708996 - Alu SINE Alu -16 295 175 1459 268 78 44 chr9 42153636 42154300 -75708327 + L1MCa LINE L1 775 1461 -4965 234 300 40 40 chr9 42154374 42154524 -75708103 - MLT1K LTR MaLR -13 575 426 1703 238 110 42 chr9 42154554 42154630 -75707997 + LTR48B LTR ERV1 1 70 -574 2561 66 0 0 chr9 42154630 42154934 -75707693 - AluY SINE Alu -7 304 1 1703 238 110 42 chr9 42154934 42155458 -75707169 + LTR48B LTR ERV1 70 642 -2 2299 90 0 22 chr9 42155815 42156126 -75706501 + AluY SINE Alu 1 304 -7 205 223 154 69 chr9 42156487 42156617 -75706010 + MIR3 SINE MIR 11 151 -57 403 313 62 91 chr9 42157147 42157356 -75705271 - L2 LINE L2 -588 2726 2533 2509 72 0 0 chr9 42157356 42157660 -75704967 - AluSg SINE Alu -6 304 1 403 313 62 91 chr9 42157660 42157866 -75704761 - L2 LINE L2 -781 2533 2323 446 261 183 7 chr9 42157972 42158125 -75704502 + MER5A DNA MER1_type 10 189 0 2153 104 4 0 chr9 42159729 42160054 -75702573 + AluY SINE Alu 1 326 0 2090 96 27 14 chr9 42160953 42161245 -75701382 - AluY SINE Alu -13 298 3 1620 83 0 0 chr9 42161257 42161461 -75701166 - AluY SINE Alu -107 204 1 244 206 162 0 chr9 42161985 42162053 -75700574 + L1MEd LINE L1 318 396 -5723 257 361 172 0 chr9 42162616 42162738 -75699889 - L2 LINE L2 -3 3269 3127 684 268 50 42 chr9 42163215 42163668 -75698959 + MLT1D LTR MaLR 7 505 0 213 39 0 0 chr9 42164046 42164072 -75698555 + (A)n Simple_repeat Simple_repeat 1 26 0 1706 208 0 7 chr9 42166979 42167287 -75695340 - AluJo SINE Alu -6 306 1 351 204 39 29 chr9 42167289 42167392 -75695235 - MER58 DNA MER1_type -88 127 24 668 213 20 87 chr9 42167566 42167761 -75694866 + MIR SINE MIR 31 214 -48 297 205 36 12 chr9 42167768 42167851 -75694776 + L1MB3 LINE L1 5688 5772 -411 1842 153 55 0 chr9 42167863 42168209 -75694418 + L1MB3 LINE L1 5818 6182 -1 2046 106 33 10 chr9 42168283 42168585 -75694042 - AluSg SINE Alu 0 310 2 698 120 0 0 chr9 42169514 42169622 -75693005 + L1MA2 LINE L1 6197 6304 0 5328 137 13 24 chr9 42169979 42171434 -75691193 + L1PA16 LINE L1 4708 6161 -5 234 114 0 0 chr9 42171455 42171490 -75691137 + MSTD LTR MaLR 1 35 -361 * 651 179 61 14 chr9 42171488 42171663 -75690964 + MSTD LTR MaLR 155 377 -51 689 228 85 0 chr9 42171665 42171937 -75690690 + L1M3c LINE L1 1202 1496 -4645 11594 36 6 1 chr9 42172048 42174275 -75688352 + L1PA4 LINE L1 3942 6152 -3 286 327 108 16 chr9 42174385 42174636 -75687991 + LTR16C LTR ERVL 169 442 -49 1295 175 59 20 chr9 42175103 42175406 -75687221 - LTR40b LTR ERVL 0 462 148 2350 80 3 0 chr9 42176204 42176503 -75686124 + AluY SINE Alu 1 300 -11 2743 91 3 3 chr9 42177772 42178136 -75684491 - THE1B LTR MaLR 0 364 1 2328 64 0 7 chr9 42178313 42178625 -75684002 - AluY SINE Alu 0 310 1 272 322 89 0 chr9 42178655 42178745 -75683882 - MIR SINE MIR -81 127 30 606 253 146 0 chr9 42179251 42179484 -75683143 - L1MC4 LINE L1 -180 7862 7596 592 106 0 0 chr9 42179855 42179940 -75682687 - AluSg/x SINE Alu -12 297 213 1118 111 6 12 chr9 42179940 42180102 -75682525 - AluSq SINE Alu -152 161 1 2329 76 0 23 chr9 42180751 42181052 -75681575 - AluSq SINE Alu -19 294 1 639 226 7 15 chr9 42183208 42183345 -75679282 + FRAM SINE Alu 1 136 -40 221 197 14 0 chr9 42183404 42183475 -75679152 + GA-rich Low_complexity Low_complexity 3 74 0 2429 230 47 66 chr9 42183491 42184757 -75677870 + L1M1 LINE L1 2598 3825 -3740 2400 93 0 13 chr9 42184757 42185070 -75677557 + AluSg SINE Alu 1 309 -1 2429 230 47 66 chr9 42185070 42185477 -75677150 + L1M1 LINE L1 3825 4238 -3327 21 0 0 0 chr9 42185602 42185623 -75677004 + AT_rich Low_complexity Low_complexity 1 21 0 2331 110 0 3 chr9 42185921 42186231 -75676396 + AluY SINE Alu 1 309 -2 26 50 0 0 chr9 42187678 42187718 -75674909 + AT_rich Low_complexity Low_complexity 1 40 0 17792 65 4 5 chr9 42188149 42190668 -75671959 + L1P LINE L1 951 3466 -2680 302 0 0 26 chr9 42190771 42190810 -75671817 + (CA)n Simple_repeat Simple_repeat 2 39 0 21 36 0 0 chr9 42191071 42191099 -75671528 + AT_rich Low_complexity Low_complexity 1 28 0 1269 191 141 0 chr9 42192426 42192682 -75669945 + AluJb SINE Alu 1 292 -10 492 18 0 0 chr9 42194887 42194944 -75667683 + (TG)n Simple_repeat Simple_repeat 1 57 0 1773 276 56 7 chr9 42195500 42196380 -75666247 + L1MEc LINE L1 2172 3051 -3164 756 155 20 0 chr9 42199313 42199461 -75663166 - L1MB3 LINE L1 -4 6179 6029 312 269 9 9 chr9 42199736 42199844 -75662783 + (TA)n Simple_repeat Simple_repeat 1 108 0 1821 62 0 9 chr9 42200599 42200824 -75661803 + AluY SINE Alu 87 309 -2 490 88 11 11 chr9 42201384 42201475 -75661152 + (GA)n Simple_repeat Simple_repeat 2 92 0 184 267 100 0 chr9 42202369 42202429 -75660198 + MIR SINE MIR 178 243 -19 1414 207 99 14 chr9 42203325 42203678 -75658949 - MLT1B LTR MaLR -4 386 4 268 119 45 0 chr9 42204777 42204844 -75657783 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 281 346 33 25 chr9 42205103 42205399 -75657228 + L2 LINE L2 2791 3090 -223 213 214 0 0 chr9 42205499 42205541 -75657086 + L2 LINE L2 3241 3282 -31 196 239 104 0 chr9 42205853 42205920 -75656707 - MIR SINE MIR -83 179 106 204 338 14 14 chr9 42205977 42206051 -75656576 - MIR SINE MIR -105 103 30 454 204 259 27 chr9 42206075 42206260 -75656367 + MIR SINE MIR 40 262 0 1348 199 10 70 chr9 42206279 42206517 -75656110 - AluJo SINE Alu -15 297 79 1723 104 0 0 chr9 42206517 42206747 -75655880 + AluSg/x SINE Alu 72 301 -9 1348 199 10 70 chr9 42206747 42206809 -75655818 - AluJo SINE Alu -233 79 15 35755 62 10 6 chr9 42207083 42207856 -75654771 + L1PA5 LINE L1 405 1174 -4980 318 23 0 0 chr9 42207856 42207900 -75654727 + L1PA2 LINE L1 6110 6153 -2 35755 62 10 6 chr9 42207900 42212850 -75649777 + L1PA5 LINE L1 1174 6148 -6 1494 192 45 24 chr9 42213038 42213371 -75649256 - MER2 DNA MER2_type -4 340 1 2285 104 13 0 chr9 42213765 42214073 -75648554 - AluSq SINE Alu -1 312 1 2955 182 10 11 chr9 42214435 42214956 -75647671 + MER44D DNA MER2_type 1 575 -30 471 134 268 0 chr9 42215881 42215993 -75646634 - L1MB1 LINE L1 -19 6170 6029 1538 181 16 23 chr9 42216000 42216304 -75646323 + L1M3 LINE L1 5484 5785 -383 26 0 0 0 chr9 42218054 42218080 -75644547 + AT_rich Low_complexity Low_complexity 1 26 0 194 88 0 29 chr9 42218175 42218209 -75644418 + (TCCC)n Simple_repeat Simple_repeat 4 36 0 27 29 0 0 chr9 42218284 42218318 -75644309 + AT_rich Low_complexity Low_complexity 1 34 0 284 167 0 0 chr9 42218623 42218671 -75643956 + Alu SINE Alu 1 48 -253 353 204 157 9 chr9 42218820 42218928 -75643699 - L1MB1 LINE L1 0 6168 6045 1277 204 23 30 chr9 42218942 42219246 -75643381 + L1M3 LINE L1 5484 5785 -383 29 0 0 0 chr9 42221002 42221031 -75641596 + AT_rich Low_complexity Low_complexity 1 29 0 276 30 0 0 chr9 42221250 42221283 -75641344 + (TTCC)n Simple_repeat Simple_repeat 2 34 0 295 129 0 57 chr9 42221995 42222065 -75640562 + (GGGAA)n Simple_repeat Simple_repeat 3 68 0 346 284 29 10 chr9 42223175 42223277 -75639350 - MER5B DNA MER1_type 0 178 75 1758 173 13 7 chr9 42223411 42223712 -75638915 - AluJb SINE Alu -6 306 4 660 288 29 0 chr9 42224231 42224401 -75638226 - MIR SINE MIR -74 188 14 256 159 16 16 chr9 42224684 42224747 -75637880 + GA-rich Low_complexity Low_complexity 2 64 0 3968 119 34 0 chr9 42226218 42226832 -75635795 - MER41B LTR ERV1 0 635 1 302 224 26 0 chr9 42227944 42228020 -75634607 - MER116 DNA Mariner 0 80 3 327 49 0 0 chr9 42228868 42228909 -75633718 + (TA)n Simple_repeat Simple_repeat 2 42 0 273 288 153 13 chr9 42228942 42229178 -75633449 - L1MB1 LINE L1 -1919 5889 5621 708 296 57 6 chr9 42229402 42229633 -75632994 + MIR SINE MIR 5 244 -18 316 233 22 11 chr9 42229826 42229916 -75632711 - L1MB1 LINE L1 -2312 5473 5383 2314 69 0 0 chr9 42229921 42230227 -75632400 - AluY SINE Alu 0 311 6 299 281 65 43 chr9 42230516 42230655 -75631972 - L1P LINE L1 -1101 5045 4904 2142 117 0 13 chr9 42230787 42231087 -75631540 - AluSx SINE Alu -16 296 1 800 132 72 6 chr9 42231173 42231340 -75631287 - L1MA8 LINE L1 -2 6289 6112 420 259 80 0 chr9 42231443 42231555 -75631072 + MIR SINE MIR 124 244 -18 310 212 5 25 chr9 42231749 42231840 -75630787 - L1MC/D LINE L1 -674 5447 5380 2244 87 0 0 chr9 42231843 42232158 -75630469 - AluY SINE Alu 0 320 6 287 303 0 28 chr9 42232472 42232581 -75630046 - L1P LINE L1 -1137 5009 4904 2060 127 0 13 chr9 42232713 42233012 -75629615 - AluSx SINE Alu -17 295 1 14120 182 33 36 chr9 42233098 42235113 -75627514 - L1MA8 LINE L1 -2 7708 5689 1617 176 32 7 chr9 42235113 42235397 -75627230 - AluJb SINE Alu -21 291 1 14120 182 33 36 chr9 42235397 42236811 -75625816 - L1MA8 LINE L1 -2021 5689 4272 2120 116 20 0 chr9 42236811 42237112 -75625515 - AluSc SINE Alu -2 307 1 14120 182 33 36 chr9 42237112 42237547 -75625080 - L1MA8 LINE L1 -3438 4272 3837 2293 90 0 13 chr9 42237547 42237846 -75624781 - AluSg SINE Alu -15 295 1 14120 182 33 36 chr9 42237846 42239112 -75623515 - L1MA8 LINE L1 -3873 3837 2598 287 169 14 0 chr9 42239128 42239199 -75623428 + CT-rich Low_complexity Low_complexity 3 74 0 676 257 0 0 chr9 42239250 42239386 -75623241 - FRAM SINE Alu -40 136 1 782 229 83 9 chr9 42239387 42239723 -75622904 - L1M3c LINE L1 -4572 2465 2105 754 170 115 6 chr9 42239739 42239904 -75622723 - MSTD LTR MaLR -59 337 155 245 114 0 0 chr9 42239902 42239937 -75622690 - MSTD LTR MaLR -361 35 1 * 5534 143 19 6 chr9 42239958 42241429 -75621198 - L1PA16 LINE L1 -5 6161 4675 346 237 108 0 chr9 42241457 42241550 -75621077 - L1M3c LINE L1 -6922 108 6 229 263 0 0 chr9 42241626 42241683 -75620944 - L1M4 LINE L1 -1569 4577 4521 2203 90 35 7 chr9 42241924 42242214 -75620413 - AluSq SINE Alu -9 304 7 24 0 0 0 chr9 42242748 42242772 -75619855 + AT_rich Low_complexity Low_complexity 1 24 0 277 308 192 0 chr9 42242953 42243109 -75619518 - MIR SINE MIR -1 261 76 186 343 60 0 chr9 42244457 42244524 -75618103 - MIR SINE MIR -121 141 71 837 120 20 7 chr9 42244813 42244963 -75617664 - L1MB3 LINE L1 -3 6180 6029 235 180 20 0 chr9 42245241 42245291 -75617336 + (TA)n Simple_repeat Simple_repeat 2 52 0 201 74 0 0 chr9 42245315 42245342 -75617285 + (TG)n Simple_repeat Simple_repeat 2 28 0 27 0 0 0 chr9 42245342 42245369 -75617258 + AT_rich Low_complexity Low_complexity 1 27 0 204 324 127 0 chr9 42246785 42246931 -75615696 - L2 LINE L2 -264 3049 2885 519 291 53 93 chr9 42247117 42247492 -75615135 - L2 LINE L2 -658 2656 2297 708 268 113 26 chr9 42248297 42248607 -75614020 - MER46C DNA MER2_type 0 338 2 2157 100 25 0 chr9 42249353 42249674 -75612953 + L1MA2 LINE L1 5976 6304 0 197 274 48 0 chr9 42250332 42250394 -75612233 - L2 LINE L2 -2 3270 3206 1359 210 107 62 chr9 42250400 42250838 -75611789 - MLT1C LTR MaLR -4 463 6 871 102 0 8 chr9 42251336 42251507 -75611120 - AluSp/q SINE Alu 0 336 167 2089 130 0 34 chr9 42251647 42251970 -75610657 + AluSx SINE Alu 1 312 0 23 54 0 0 chr9 42252189 42252226 -75610401 + AT_rich Low_complexity Low_complexity 1 37 0 465 218 73 0 chr9 42253060 42253170 -75609457 + L1MA8 LINE L1 5914 6031 -260 203 136 23 23 chr9 42253965 42254009 -75608618 + (TA)n Simple_repeat Simple_repeat 1 44 0 204 336 33 33 chr9 42254595 42254717 -75607910 + L3 LINE CR1 597 718 -859 2059 119 0 0 chr9 42255021 42255336 -75607291 - AluSc SINE Alu 0 315 1 206 136 23 0 chr9 42257475 42257519 -75605108 + (CAT)n Simple_repeat Simple_repeat 2 46 0 2270 275 39 7 chr9 42258298 42259188 -75603439 + L1MEc LINE L1 2172 3051 -3164 584 214 40 0 chr9 42260667 42260793 -75601834 - L1MD2 LINE L1 -19 6340 6210 266 265 179 26 chr9 42260831 42260948 -75601679 - L1ME1 LINE L1 -90 6076 5942 * 503 206 96 14 chr9 42260946 42261092 -75601535 - L1MDa LINE L1 -6363 177 20 1015 179 17 125 chr9 42261396 42261510 -75601117 - L1ME1 LINE L1 -334 5832 5707 2105 141 36 28 chr9 42261510 42261871 -75600756 - THE1B LTR MaLR 0 364 1 1015 179 17 125 chr9 42261871 42261950 -75600677 - L1ME1 LINE L1 -459 5707 5621 1880 139 10 23 chr9 42261950 42262252 -75600375 - AluSx SINE Alu -14 298 1 1015 179 17 125 chr9 42262252 42262408 -75600219 - L1ME1 LINE L1 -545 5621 5520 1057 213 41 25 chr9 42262438 42262753 -75599874 - L1ME1 LINE L1 -1610 4536 4217 1248 284 11 11 chr9 42262776 42263135 -75599492 + LTR40c LTR ERVL 5 363 -102 297 228 87 11 chr9 42263138 42263230 -75599397 - L1ME LINE L1 -676 5490 5392 * 1093 252 143 49 chr9 42263228 42263839 -75598788 + L1ME2 LINE L1 5488 6163 -1 1191 150 0 6 chr9 42264439 42264619 -75598008 + AluSq SINE Alu 1 179 -134 251 286 43 0 chr9 42264640 42264710 -75597917 + GA-rich Low_complexity Low_complexity 6 78 0 180 0 0 0 chr9 42264711 42264731 -75597896 + (GGGGA)n Simple_repeat Simple_repeat 2 21 0 353 296 0 22 chr9 42266088 42266267 -75596360 + (TA)n Simple_repeat Simple_repeat 2 176 0 228 174 0 0 chr9 42266296 42266342 -75596285 - LTR66 LTR ERVL -171 439 394 204 40 0 0 chr9 42266379 42266404 -75596223 + (CA)n Simple_repeat Simple_repeat 2 26 0 300 253 58 0 chr9 42266492 42266579 -75596048 - L1MC4 LINE L1 -1337 6705 6614 698 120 0 0 chr9 42267527 42267635 -75594992 - L1MA2 LINE L1 0 6304 6197 207 0 0 0 chr9 42267723 42267746 -75594881 + (CAT)n Simple_repeat Simple_repeat 2 24 0 2127 68 21 21 chr9 42268596 42268911 -75593716 + AluSg SINE Alu 2 316 0 1861 147 55 0 chr9 42268983 42269329 -75593298 - L1MB3 LINE L1 -1 6182 5818 317 229 24 0 chr9 42269341 42269424 -75593203 - L1MB3 LINE L1 -411 5772 5688 669 213 20 87 chr9 42269431 42269626 -75593001 - MIR SINE MIR -48 214 31 322 219 21 31 chr9 42269800 42269896 -75592731 + MER58C DNA MER1_type 24 118 -97 1716 204 0 7 chr9 42269905 42270213 -75592414 + AluJo SINE Alu 1 306 -6 317 214 0 12 chr9 42270220 42270304 -75592323 + GA-rich Low_complexity Low_complexity 3 85 0 374 240 39 0 chr9 42270308 42270412 -75592215 + MER58C DNA MER1_type 106 213 -2 2331 164 24 19 chr9 42270422 42270890 -75591737 - L1MA7 LINE L1 0 6291 5822 884 91 15 23 chr9 42272456 42272588 -75590039 - FLAM_C SINE Alu -2 131 1 2414 63 0 60 chr9 42273828 42274159 -75588468 + AluY SINE Alu 1 311 0 21 0 0 0 chr9 42275369 42275390 -75587237 + AT_rich Low_complexity Low_complexity 1 21 0 1815 117 53 0 chr9 42277337 42277645 -75584982 + AluSc SINE Alu 1 322 0 21 0 0 0 chr9 42278964 42278985 -75583642 + AT_rich Low_complexity Low_complexity 1 21 0 2048 108 0 57 chr9 42278985 42279301 -75583326 + AluY SINE Alu 1 298 -13 543 193 0 93 chr9 42280430 42280591 -75582036 - L1ME1 LINE L1 -8 6158 6013 241 381 68 7 chr9 42282652 42282799 -75579828 + L2 LINE L2 3109 3264 -8 2152 126 0 0 chr9 42283244 42283546 -75579081 + AluY SINE Alu 4 305 -6 283 353 172 0 chr9 42284644 42284766 -75577861 - L2 LINE L2 -3 3269 3127 627 268 50 42 chr9 42285245 42285698 -75576929 + MLT1D LTR MaLR 7 505 0 192 77 0 0 chr9 42286076 42286102 -75576525 + (A)n Simple_repeat Simple_repeat 1 26 0 267 281 28 28 chr9 42286576 42286754 -75575873 + MLT1K LTR MaLR 88 265 -323 576 252 48 0 chr9 42286809 42286956 -75575671 - L2 LINE L2 0 3313 3160 312 312 208 9 chr9 42287011 42287232 -75575395 + MLT1K LTR MaLR 309 573 -15 187 350 21 57 chr9 42287506 42287700 -75574927 + L2 LINE L2 2738 2924 -390 1101 70 6 38 chr9 42288444 42288602 -75574025 - AluYb8 SINE Alu -165 153 1 1711 85 15 0 chr9 42289234 42289494 -75573133 + L1MA1 LINE L1 6039 6302 0 26 0 0 0 chr9 42289496 42289522 -75573105 + AT_rich Low_complexity Low_complexity 1 26 0 1773 139 0 0 chr9 42290365 42290617 -75572010 + AluSg SINE Alu 45 296 -14 611 85 0 0 chr9 42290805 42290887 -75571740 + L1PA4 LINE L1 7 88 -6058 31830 51 37 34 chr9 42290887 42296407 -75566220 + L1PA4 LINE L1 617 6152 -3 254 331 108 16 chr9 42296521 42296772 -75565855 + LTR16C LTR ERVL 169 442 -49 1305 175 59 20 chr9 42297244 42297547 -75565080 - LTR40b LTR ERVL 0 462 148 24 0 0 0 chr9 42297980 42298004 -75564623 + AT_rich Low_complexity Low_complexity 1 24 0 629 253 146 0 chr9 42300483 42300716 -75561911 - L1MC4 LINE L1 -180 7862 7596 610 103 0 0 chr9 42301096 42301183 -75561444 - AluSg/x SINE Alu -10 300 214 1143 111 6 12 chr9 42301183 42301345 -75561282 - AluSq SINE Alu -152 161 1 2409 70 0 23 chr9 42301995 42302297 -75560330 - AluSq SINE Alu -18 295 1 22 0 0 0 chr9 42303679 42303701 -75558926 + GC_rich Low_complexity Low_complexity 1 22 0 309 210 153 51 chr9 42304163 42304320 -75558307 - MER96B DNA MER1_type? -244 173 1 2104 85 24 3 chr9 42305009 42305302 -75557325 + AluSc SINE Alu 1 299 -10 21 36 0 0 chr9 42306095 42306123 -75556504 + AT_rich Low_complexity Low_complexity 1 28 0 1970 141 0 16 chr9 42306482 42306787 -75555840 - AluSx SINE Alu -12 300 1 27 29 0 0 chr9 42308049 42308083 -75554544 + AT_rich Low_complexity Low_complexity 1 34 0 2320 110 0 3 chr9 42308385 42308695 -75553932 + AluY SINE Alu 1 309 -2 26 50 0 0 chr9 42310143 42310183 -75552444 + AT_rich Low_complexity Low_complexity 1 40 0 1301 99 10 20 chr9 42310600 42310774 -75551853 - AluY SINE Alu -7 304 131 383 0 21 0 chr9 42310774 42310821 -75551806 + (TG)n Simple_repeat Simple_repeat 2 49 0 1301 99 10 20 chr9 42310821 42310847 -75551780 - AluY SINE Alu -180 131 106 262 0 0 0 chr9 42310849 42310885 -75551742 - AluY SINE Alu -130 171 136 441 0 0 0 chr9 42310885 42310934 -75551693 + (TG)n Simple_repeat Simple_repeat 2 50 0 2324 69 10 0 chr9 42310935 42311226 -75551401 - AluY SINE Alu -17 294 1 2081 130 7 0 chr9 42311452 42311751 -75550876 + AluSx SINE Alu 1 301 -11 3652 117 71 23 chr9 42311762 42311989 -75550638 + L1PA15 LINE L1 5522 5737 -428 2274 88 0 0 chr9 42311989 42312294 -75550333 + AluY SINE Alu 1 305 -6 3652 117 71 23 chr9 42312294 42312674 -75549953 + L1PA15 LINE L1 5737 6158 -7 334 317 148 0 chr9 42312758 42312900 -75549727 + MIR SINE MIR 74 236 -26 2021 258 64 27 chr9 42313015 42314072 -75548555 + L1MEc LINE L1 1562 2617 -3598 2283 103 0 3 chr9 42314072 42314374 -75548253 - AluSq SINE Alu -12 301 1 2021 258 64 27 chr9 42314374 42314606 -75548021 + L1MEc LINE L1 2617 2839 -3376 262 308 65 33 chr9 42314589 42314803 -75547824 + L1MCa LINE L1 -260 4294967256 -6320 * 1896 238 26 34 chr9 42315297 42315927 -75546700 + L1M4 LINE L1 794 1709 -4594 2955 141 103 6 chr9 42315927 42316432 -75546195 + MER41C LTR ERV1 1 554 0 1896 238 26 34 chr9 42316432 42316511 -75546116 + L1M4 LINE L1 1709 1787 -4516 282 266 0 0 chr9 42316532 42316596 -75546031 + L1M4 LINE L1 1595 1658 -4726 * 5241 208 67 49 chr9 42316592 42316831 -75545796 + L1MCa LINE L1 -27 206 -6176 2126 128 10 0 chr9 42316831 42317136 -75545491 + AluSq SINE Alu 1 308 -5 5241 208 67 49 chr9 42317136 42319431 -75543196 + L1MCa LINE L1 206 2533 -3849 1249 202 96 22 chr9 42319624 42320000 -75542627 + LTR43 LTR ERV1 176 632 -2 5781 236 46 81 chr9 42320002 42322531 -75540096 + L1MCa LINE L1 2531 4970 -1412 1881 182 57 12 chr9 42322530 42322948 -75539679 + L1MC2 LINE L1 5907 6343 -1 * 1351 260 36 4 chr9 42322953 42323430 -75539197 + L1M4 LINE L1 2398 2889 -3493 516 286 17 47 chr9 42323434 42323610 -75539017 + L1MB8 LINE L1 1491 1660 -4724 2469 70 0 0 chr9 42323610 42323909 -75538718 + AluY SINE Alu 1 299 -12 516 286 17 47 chr9 42323909 42323966 -75538661 + L1MB8 LINE L1 1660 1717 -4667 4818 83 15 0 chr9 42324374 42325135 -75537492 + L1P3 LINE L1 4692 5461 -711 2427 45 7 7 chr9 42325158 42325466 -75537161 - AluY SINE Alu -3 308 1 964 111 177 22 chr9 42325466 42325647 -75536980 + THE1B LTR MaLR 156 364 0 1035 234 70 23 chr9 42325649 42326517 -75536110 + L1MB8 LINE L1 2616 3841 -2541 1621 219 50 50 chr9 42326520 42326999 -75535628 + L1MB8 LINE L1 5930 6408 -6 312 259 35 65 chr9 42327507 42327677 -75534950 + L1M4 LINE L1 3180 3344 -3038 2259 89 0 0 chr9 42327788 42328080 -75534547 - AluSc SINE Alu -17 292 1 715 234 30 52 chr9 42328457 42328715 -75533912 + L1MC4 LINE L1 7803 7995 0 1872 185 25 48 chr9 42329226 42329702 -75532925 - L1MA7 LINE L1 0 6291 5827 2575 192 35 79 chr9 42329714 42330489 -75532138 - L1 LINE L1 -2777 3369 2629 2463 65 3 3 chr9 42330518 42330826 -75531801 - AluY SINE Alu -1 310 3 23 78 0 0 chr9 42330880 42330931 -75531696 + AT_rich Low_complexity Low_complexity 1 51 0 24 77 0 0 chr9 42331548 42331600 -75531027 + AT_rich Low_complexity Low_complexity 1 52 0 198 0 0 0 chr9 42332251 42332273 -75530354 + (T)n Simple_repeat Simple_repeat 1 22 0 1603 178 70 13 chr9 42332407 42332722 -75529905 + THE1C LTR MaLR 43 375 0 9853 106 36 50 chr9 42332722 42332852 -75529775 + THE1C-int LTR MaLR 1 131 -1449 2103 108 3 3 chr9 42332852 42333147 -75529480 + AluSq SINE Alu 5 299 -14 9853 106 36 50 chr9 42333147 42334618 -75528009 + THE1C-int LTR MaLR 131 1580 0 2131 128 56 14 chr9 42334618 42334978 -75527649 + THE1C LTR MaLR 1 375 0 713 150 0 0 chr9 42335341 42335484 -75527143 - AluSc SINE Alu 0 310 168 2006 187 13 33 chr9 42336109 42336559 -75526068 + MER66B LTR ERV1 46 486 0 325 290 131 9 chr9 42337529 42337636 -75524991 + MIR3 SINE MIR 14 133 -75 269 296 94 28 chr9 42338641 42338959 -75523668 - L1ME3A LINE L1 -222 5948 5610 2247 109 3 0 chr9 42339059 42339361 -75523266 - AluY SINE Alu -8 303 1 214 332 129 17 chr9 42339433 42339665 -75522962 - L2 LINE L2 -128 3185 2928 954 211 10 19 chr9 42339712 42339921 -75522706 + Tigger6a DNA MER2_type 5 211 -872 1654 224 41 37 chr9 42339921 42340380 -75522247 - MLT1C LTR MaLR 0 467 7 * 3390 184 93 33 chr9 42340367 42340989 -75521638 + Tigger6a DNA MER2_type 216 900 -697 1965 112 47 0 chr9 42340989 42341267 -75521360 + AluY SINE Alu 3 293 -18 3390 184 93 33 chr9 42341267 42341463 -75521164 + Tigger6a DNA MER2_type 900 1083 0 1595 176 39 73 chr9 42341984 42342280 -75520347 - MER67B LTR ERV1 -108 452 272 2120 115 24 0 chr9 42342280 42342576 -75520051 - AluSc SINE Alu -6 303 1 1595 176 39 73 chr9 42342576 42342840 -75519787 - MER67B LTR ERV1 -288 272 1 32 67 0 0 chr9 42343251 42343311 -75519316 + AT_rich Low_complexity Low_complexity 1 60 0 21 0 0 0 chr9 42343348 42343369 -75519258 + AT_rich Low_complexity Low_complexity 1 21 0 760 111 133 0 chr9 42343509 42343644 -75518983 + AluSg/x SINE Alu 130 282 -28 21 0 0 0 chr9 42343932 42343953 -75518674 + AT_rich Low_complexity Low_complexity 1 21 0 1449 221 65 27 chr9 42343998 42344401 -75518226 + MER67B LTR ERV1 1 418 -243 2043 120 0 0 chr9 42346267 42346543 -75516084 - AluSc SINE Alu -33 276 1 264 241 65 42 chr9 42347137 42347292 -75515335 - L1M4 LINE L1 -1090 5056 4911 232 257 40 0 chr9 42347461 42347535 -75515092 - L1M4 LINE L1 -1437 4709 4633 * 570 273 105 28 chr9 42347534 42347704 -75514923 - L1M4 LINE L1 -2042 4104 3949 2263 90 0 10 chr9 42347704 42348003 -75514624 - AluY SINE Alu -15 296 1 570 273 105 28 chr9 42348003 42348195 -75514432 - L1M4 LINE L1 -2197 3949 3714 245 316 51 6 chr9 42348297 42348455 -75514172 - L1M4 LINE L1 -2607 3539 3375 662 229 89 128 chr9 42348475 42348749 -75513878 - L1ME3A LINE L1 -11 6159 5876 2408 69 0 10 chr9 42348749 42349052 -75513575 - AluY SINE Alu -11 300 1 662 229 89 128 chr9 42349052 42349136 -75513491 - L1ME3A LINE L1 -294 5876 5790 4448 144 68 25 chr9 42349136 42349607 -75513020 - L1MC1 LINE L1 -11 6322 5873 205 27 81 0 chr9 42349607 42349644 -75512983 + T-rich Low_complexity Low_complexity 1 40 0 2006 95 0 18 chr9 42349644 42349928 -75512699 - AluY SINE Alu -32 279 1 4448 144 68 25 chr9 42349928 42350306 -75512321 - L1MC1 LINE L1 -459 5874 5435 662 229 89 128 chr9 42350306 42350841 -75511786 - L1ME3A LINE L1 -380 5790 5310 285 234 78 26 chr9 42350844 42350998 -75511629 - L1ME3A LINE L1 -877 5269 5108 2174 74 10 17 chr9 42351024 42351321 -75511306 + AluY SINE Alu 1 295 -16 1481 141 36 62 chr9 42351584 42352010 -75510617 - LTR12 LTR ERV1 -234 480 1 288 318 127 62 chr9 42352019 42352485 -75510142 - L1MEd LINE L1 -5560 559 64 22 0 0 0 chr9 42353198 42353220 -75509407 + AT_rich Low_complexity Low_complexity 1 22 0 2846 19 0 0 chr9 42353544 42353859 -75508768 - AluYb8 SINE Alu -3 315 1 964 111 177 22 chr9 42353859 42354040 -75508587 + THE1B LTR MaLR 156 364 0 707 244 72 27 chr9 42354042 42354910 -75507717 + L1M4 LINE L1 2380 3605 -2541 1609 219 50 50 chr9 42354913 42355392 -75507235 + L1MB8 LINE L1 5694 6172 -6 312 259 35 65 chr9 42355900 42356070 -75506557 + L1M4 LINE L1 2944 3108 -3038 2259 89 0 0 chr9 42356181 42356473 -75506154 - AluSc SINE Alu -17 292 1 715 234 30 52 chr9 42356850 42357108 -75505519 + L1MC4 LINE L1 7803 7995 0 999 194 0 0 chr9 42358115 42358280 -75504347 - AluJb SINE Alu -15 297 133 1868 124 0 4 chr9 42358295 42358561 -75504066 + AluSc SINE Alu 35 299 -10 2272 91 17 0 chr9 42359340 42359637 -75502990 + AluSx SINE Alu 5 306 -6 746 86 17 0 chr9 42359774 42359890 -75502737 - AluY SINE Alu -4 307 190 653 107 183 0 chr9 42360005 42360136 -75502491 - AluY SINE Alu -156 155 1 200 279 29 0 chr9 42360420 42360488 -75502139 + T-rich Low_complexity Low_complexity 2 71 0 333 304 114 43 chr9 42360512 42360792 -75501835 - L1M4 LINE L1 -3131 3015 2716 2261 79 41 0 chr9 42361186 42361478 -75501149 - AluY SINE Alu -7 304 1 2823 201 78 13 chr9 42361750 42361807 -75500820 + L1MB7 LINE L1 5363 5415 -769 1459 198 58 68 chr9 42361807 42362201 -75500426 + MLT1B LTR MaLR 1 390 0 2823 201 78 13 chr9 42362201 42362823 -75499804 + L1MB7 LINE L1 5415 6086 -98 1758 171 24 3 chr9 42362825 42363123 -75499504 + MER2 DNA MER2_type 1 304 -41 422 117 13 26 chr9 42363123 42363200 -75499427 + L1MB8 LINE L1 6103 6178 0 2254 109 0 3 chr9 42363846 42364157 -75498470 + AluY SINE Alu 1 310 -1 2417 91 0 3 chr9 42364415 42364724 -75497903 + AluSc SINE Alu 1 308 -1 248 305 96 5 chr9 42366142 42366329 -75496298 - HAL1 LINE L1 -814 1693 1490 408 318 56 13 chr9 42366348 42366581 -75496046 + HAL1 LINE L1 1491 1733 -774 1526 191 3 7 chr9 42367265 42367572 -75495055 + AluSx SINE Alu 1 306 0 4965 143 50 32 chr9 42367782 42368300 -75494327 - L1MA9 LINE L1 0 6312 5768 246 32 0 0 chr9 42368300 42368331 -75494296 + (TG)n Simple_repeat Simple_repeat 2 32 0 4965 143 50 32 chr9 42368331 42368776 -75493851 - L1MA9 LINE L1 -544 5768 5332 2063 161 42 31 chr9 42368776 42369136 -75493491 + THE1B LTR MaLR 1 364 0 11446 128 9 0 chr9 42369136 42370702 -75491925 + THE1B-int LTR MaLR 1 1580 0 2170 147 35 46 chr9 42370702 42370998 -75491629 + THE1B LTR MaLR 1 294 -70 2240 110 0 0 chr9 42370998 42371288 -75491339 - AluY SINE Alu -21 290 1 2170 147 35 46 chr9 42371288 42371359 -75491268 + THE1B LTR MaLR 294 364 0 4596 212 63 17 chr9 42371369 42372228 -75490399 - L1MA9 LINE L1 -857 5289 4366 1898 99 91 0 chr9 42372228 42372491 -75490136 - AluY SINE Alu -24 287 1 4596 212 63 17 chr9 42372491 42372747 -75489880 - L1MA9 LINE L1 -1780 4366 4123 5662 216 83 32 chr9 42372764 42373135 -75489492 + L1MCa LINE L1 1773 2124 -4302 2037 184 24 0 chr9 42373135 42373471 -75489156 - MER7A DNA MER2_type -1 345 4 5662 216 83 32 chr9 42373471 42374719 -75487908 + L1MCa LINE L1 2124 3552 -2874 2003 94 25 0 chr9 42374719 42375029 -75487598 + AluY SINE Alu 1 317 0 5662 216 83 32 chr9 42375029 42375466 -75487161 + L1MCa LINE L1 3552 3965 -2461 14576 137 28 15 chr9 42375589 42377936 -75484691 + Tigger1 DNA MER2_type 1 2377 -41 296 163 0 0 chr9 42378153 42378196 -75484431 + Tigger1 DNA MER2_type 2375 2417 -1 2202 250 58 42 chr9 42378354 42379082 -75483545 + L1M2 LINE L1 2 1126 -5722 4094 86 17 0 chr9 42379086 42379612 -75483015 + L1PA10 LINE L1 5629 6163 -5 326 169 11 0 chr9 42380079 42380168 -75482459 + C-rich Low_complexity Low_complexity 3 92 0 315 0 0 0 chr9 42381040 42381075 -75481552 + (TG)n Simple_repeat Simple_repeat 2 36 0 1947 128 11 3 chr9 42381101 42381437 -75481190 - AluSx SINE Alu 0 338 1 2030 142 3 0 chr9 42387642 42387937 -75474690 - AluSq SINE Alu -17 296 1 2198 110 3 10 chr9 42390318 42390618 -75472009 - AluSx SINE Alu -14 298 1 21 36 0 0 chr9 42391646 42391674 -75470953 + AT_rich Low_complexity Low_complexity 1 28 0 2218 104 0 22 chr9 42391761 42392078 -75470549 - AluY SINE Alu -1 310 1 2272 82 3 28 chr9 42393502 42393821 -75468806 + AluY SINE Alu 1 311 0 199 256 256 22 chr9 42394187 42394324 -75468303 + MIR SINE MIR 21 189 -73 2253 101 10 7 chr9 42394449 42394755 -75467872 + AluSq SINE Alu 1 307 -6 399 315 78 17 chr9 42395295 42395527 -75467100 - MER41B LTR ERV1 -209 426 181 549 108 0 0 chr9 42396887 42396961 -75465666 - MLT1B LTR MaLR 0 390 317 3158 42 5 23 chr9 42396979 42397365 -75465262 - L1PA3 LINE L1 0 6155 5777 1773 172 12 15 chr9 42397365 42397697 -75464930 - MLT1B LTR MaLR -59 331 1 2233 114 0 10 chr9 42397751 42398059 -75464568 + AluSq SINE Alu 1 305 -8 414 0 0 0 chr9 42398404 42398450 -75464177 + (TA)n Simple_repeat Simple_repeat 2 47 0 3232 132 31 19 chr9 42399354 42399466 -75463161 - L1MA8 LINE L1 -172 6119 6008 1665 269 92 16 chr9 42399466 42400131 -75462496 - L1PA10 LINE L1 -161 6007 5293 1246 173 235 12 chr9 42400477 42400801 -75461826 + MSTD LTR MaLR 1 396 0 2334 190 7 17 chr9 42400854 42401270 -75461357 - LOR1b LTR ERV1 0 461 50 292 323 10 50 chr9 42401331 42401430 -75461197 - L2 LINE L2 -42 3230 3136 2446 89 0 0 chr9 42401672 42401974 -75460653 + AluSg SINE Alu 1 302 -8 1889 248 105 40 chr9 42401974 42402632 -75459995 + L1ME1 LINE L1 5462 6162 -4 206 143 61 0 chr9 42402645 42402694 -75459933 + (TA)n Simple_repeat Simple_repeat 2 53 0 2318 58 24 17 chr9 42402729 42403022 -75459605 - AluY SINE Alu -16 295 1 251 346 94 24 chr9 42403296 42403423 -75459204 - L2 LINE L2 0 3272 3137 2457 77 0 3 chr9 42403939 42404239 -75458388 + AluY SINE Alu 1 299 -12 2059 120 41 0 chr9 42405697 42405988 -75456639 + AluSp SINE Alu 1 303 -10 473 273 165 6 chr9 42406115 42406291 -75456336 + MIR SINE MIR 59 262 0 1999 190 14 11 chr9 42406469 42406833 -75455794 - MLT1A1 LTR MaLR 0 365 1 274 150 0 67 chr9 42407149 42407209 -75455418 + L1MB7 LINE L1 6128 6183 -1 5714 124 22 4 chr9 42407466 42408310 -75454317 - Tigger1 DNA MER2_type -1554 864 5 2396 86 10 0 chr9 42408311 42408615 -75454012 + AluSp SINE Alu 1 307 -6 1488 243 18 47 chr9 42408622 42409181 -75453446 + L1M4 LINE L1 3087 3629 -2517 23 0 0 0 chr9 42409937 42409960 -75452667 + AT_rich Low_complexity Low_complexity 1 23 0 2072 110 13 7 chr9 42411215 42411515 -75451112 - AluSx SINE Alu -10 302 1 963 124 7 0 chr9 42411768 42411913 -75450714 + L1P LINE L1 687 832 -5314 1960 153 0 3 chr9 42415864 42416152 -75446475 - AluJo SINE Alu -25 287 1 565 279 64 45 chr9 42416282 42416594 -75446033 + L1MDa LINE L1 34 351 -6189 807 236 66 18 chr9 42417054 42417388 -75445239 + L1M4 LINE L1 2669 3018 -3128 24 77 0 0 chr9 42418098 42418150 -75444477 + AT_rich Low_complexity Low_complexity 1 52 0 198 0 0 0 chr9 42418801 42418823 -75443804 + (T)n Simple_repeat Simple_repeat 1 22 0 1578 165 70 13 chr9 42418957 42419272 -75443355 + THE1C LTR MaLR 43 375 0 716 122 8 8 chr9 42419272 42419395 -75443232 + THE1C-int LTR MaLR 1 123 -1457 1951 119 43 0 chr9 42419395 42419673 -75442954 + AluSx SINE Alu 1 290 -22 373 265 95 45 chr9 42419728 42419928 -75442699 + L1M4 LINE L1 3134 3343 -2803 678 237 60 30 chr9 42419937 42420169 -75442458 - MLT1A1 LTR MaLR 0 365 127 357 24 0 0 chr9 42420484 42420526 -75442101 + (TG)n Simple_repeat Simple_repeat 1 42 0 727 231 25 17 chr9 42420532 42420770 -75441857 + L1M4 LINE L1 3509 3748 -2398 1099 257 151 7 chr9 42420976 42421552 -75441075 + L1M4 LINE L1 3995 4653 -1493 1147 232 37 13 chr9 42421574 42421954 -75440673 + L1M4 LINE L1 4724 5112 -1034 304 250 64 104 chr9 42421980 42422133 -75440494 - L1MDa LINE L1 -5517 1023 880 2219 112 13 0 chr9 42422133 42422436 -75440191 - AluSq SINE Alu -6 307 1 304 250 64 104 chr9 42422436 42422502 -75440125 - L1MDa LINE L1 -5660 880 813 1432 186 8 12 chr9 42422567 42422814 -75439813 - AluSx SINE Alu -66 246 1 295 118 39 0 chr9 42422814 42422865 -75439762 + Tigger1 DNA MER2_type 45 97 -2321 2358 82 0 0 chr9 42422969 42423273 -75439354 + AluSx SINE Alu 5 308 -4 2331 97 0 3 chr9 42423273 42423582 -75439045 + AluSc SINE Alu 1 308 -1 2021 70 59 7 chr9 42423990 42424292 -75438335 + AluY SINE Alu 1 316 0 2226 117 0 3 chr9 42424298 42424598 -75438029 + AluSx SINE Alu 1 299 -13 363 342 186 30 chr9 42426025 42426444 -75436183 - L3 LINE CR1 -227 1350 998 2246 98 3 13 chr9 42426444 42426750 -75435877 - AluSg SINE Alu -7 303 1 363 342 186 30 chr9 42426750 42426970 -75435657 - L3 LINE CR1 -579 998 611 4399 225 37 51 chr9 42427454 42427633 -75434994 + L1M4 LINE L1 3776 3956 -2190 1994 132 3 38 chr9 42427633 42427952 -75434675 + AluSg SINE Alu 1 308 -2 4399 225 37 51 chr9 42427952 42428196 -75434431 + L1M4 LINE L1 3956 4202 -1944 2448 84 0 0 chr9 42428196 42428506 -75434121 + AluY SINE Alu 1 310 -1 4399 225 37 51 chr9 42428506 42429659 -75432968 + L1M4 LINE L1 4202 5330 -816 2225 111 0 0 chr9 42429660 42429957 -75432670 + AluSg SINE Alu 1 297 -13 1651 69 0 28 chr9 42430477 42430695 -75431932 - AluY SINE Alu -2 309 98 1722 70 58 4 chr9 42430795 42431037 -75431590 + AluY SINE Alu 53 307 -4 2181 106 17 0 chr9 42431174 42431466 -75431161 - AluSx SINE Alu -11 301 5 2149 120 0 3 chr9 42432255 42432555 -75430072 - AluSc SINE Alu -10 299 1 2413 77 0 6 chr9 42432806 42433118 -75429509 + AluY SINE Alu 1 310 -1 1007 194 0 0 chr9 42433713 42433878 -75428749 - AluJb SINE Alu -15 297 133 270 179 30 30 chr9 42434267 42434334 -75428293 + (CATA)n Simple_repeat Simple_repeat 2 68 0 2060 143 10 7 chr9 42434360 42434668 -75427959 + AluSg1 SINE Alu 1 309 0 1022 107 24 48 chr9 42434937 42435105 -75427522 + LTR1 LTR ERV1 622 785 0 297 183 7 33 chr9 42435187 42435344 -75427283 + CT-rich Low_complexity Low_complexity 1 152 0 11389 155 10 19 chr9 42435395 42436797 -75425830 + L1PA13 LINE L1 3142 4509 -1654 2339 110 0 0 chr9 42436797 42437098 -75425529 + AluSc SINE Alu 1 301 -8 11389 155 10 19 chr9 42437098 42438062 -75424565 + L1PA13 LINE L1 4509 5480 -683 265 155 113 0 chr9 42438068 42438139 -75424488 + L1M4 LINE L1 2617 2695 -3451 1537 104 0 0 chr9 42438226 42438447 -75424180 - L1PA13 LINE L1 -4 6159 5939 4020 109 32 0 chr9 42438481 42439104 -75423523 + L1PA13 LINE L1 5476 6118 -45 1244 135 69 22 chr9 42439147 42439421 -75423206 + LTR1 LTR ERV1 1 287 -498 2299 58 4 0 chr9 42439459 42439737 -75422890 - AluY SINE Alu -32 279 1 524 92 53 0 chr9 42439952 42440028 -75422599 - MADE1 DNA Mariner 0 80 1 1088 159 95 4 chr9 42440787 42441019 -75421608 - MLT1C LTR MaLR 0 467 215 1549 206 16 44 chr9 42441408 42441723 -75420904 - AluJo SINE Alu -6 306 1 2199 164 51 7 chr9 42441881 42442295 -75420332 + MSTB1 LTR MaLR 1 432 0 1553 176 0 70 chr9 42442560 42442730 -75419897 - AluJo SINE Alu 0 306 166 2810 91 3 0 chr9 42442730 42443093 -75419534 - THE1B LTR MaLR 0 364 1 1553 176 0 70 chr9 42443093 42443249 -75419378 - AluJo SINE Alu -140 166 1 2099 107 10 13 chr9 42444595 42444893 -75417734 + AluSq SINE Alu 1 297 -16 2345 103 0 3 chr9 42445443 42445755 -75416872 - AluSx SINE Alu -1 311 1 441 330 44 19 chr9 42448384 42448699 -75413928 + L1M4 LINE L1 4573 4895 -1251 23 33 0 0 chr9 42448758 42448788 -75413839 + AT_rich Low_complexity Low_complexity 1 30 0 775 297 127 49 chr9 42448930 42449343 -75413284 + L1M4 LINE L1 4470 4849 -1297 2188 74 0 45 chr9 42449343 42449678 -75412949 + AluSx SINE Alu 1 312 0 775 297 127 49 chr9 42449678 42449898 -75412729 + L1M4 LINE L1 4849 5050 -1096 2356 68 7 0 chr9 42449898 42450191 -75412436 - AluY SINE Alu -16 295 1 775 297 127 49 chr9 42450191 42450311 -75412316 + L1M4 LINE L1 5050 5283 -863 2458 67 0 0 chr9 42450487 42450787 -75411840 - AluY SINE Alu -11 300 1 370 137 42 63 chr9 42451554 42451649 -75410978 - L1MD2 LINE L1 -2 6357 6265 946 100 0 15 chr9 42452565 42452695 -75409932 - AluSc SINE Alu -181 128 1 2398 96 0 3 chr9 42453138 42453451 -75409176 + AluSx SINE Alu 1 312 0 402 220 52 14 chr9 42454250 42454413 -75408214 - L1MA10 LINE L1 -10 6315 5985 249 92 53 79 chr9 42454425 42454501 -75408126 - L1M4 LINE L1 -1690 4456 4383 1046 91 0 0 chr9 42454520 42454652 -75407975 - AluY SINE Alu -179 132 1 258 260 70 0 chr9 42454674 42454774 -75407853 - L1M4 LINE L1 -1783 4363 4257 924 234 167 21 chr9 42454806 42455190 -75407437 - L1M4 LINE L1 -1871 4275 3836 4371 168 25 11 chr9 42455197 42456098 -75406529 - L1MB1 LINE L1 -1 6167 5254 3564 197 42 2 chr9 42456099 42456925 -75405702 - L1MB1 LINE L1 -1085 5061 4203 349 247 0 0 chr9 42457651 42457740 -75404887 - L1MB1 LINE L1 -2104 4042 3954 4403 166 22 12 chr9 42457828 42458733 -75403894 - L1MB1 LINE L1 -1 6167 5254 7337 200 30 3 chr9 42458734 42460463 -75402164 - L1MB1 LINE L1 -1085 5061 3288 1772 251 44 7 chr9 42460485 42461095 -75401532 - L1MB1 LINE L1 -2291 3855 3223 626 202 113 8 chr9 42461088 42461326 -75401301 - L1MEc LINE L1 -3961 2435 2173 * 3161 138 77 45 chr9 42461376 42461689 -75400938 + MER4D LTR ERV1 1 303 -600 2192 119 0 19 chr9 42461689 42462007 -75400620 - AluSx SINE Alu 0 312 1 3161 138 77 45 chr9 42462007 42462330 -75400297 + MER4D LTR ERV1 303 657 -246 1901 181 44 29 chr9 42462379 42462917 -75399710 + MLT2A2 LTR ERVL 1 554 0 1173 177 5 0 chr9 42462918 42463127 -75399500 + MER4B LTR ERV1 399 608 -2 895 192 48 24 chr9 42463131 42463381 -75399246 - L1MEc LINE L1 -4300 2096 1841 4956 138 26 2 chr9 42463388 42464200 -75398427 + L1PA5 LINE L1 2 832 -5314 29806 54 8 8 chr9 42464213 42469179 -75393448 + L1PA5 LINE L1 1178 6141 -13 1272 276 66 47 chr9 42469202 42469750 -75392877 - L1MEc LINE L1 -4547 1849 1276 2085 139 0 3 chr9 42469750 42470053 -75392574 - AluSx SINE Alu -10 302 1 1272 276 66 47 chr9 42470053 42470411 -75392216 - L1MEc LINE L1 -5120 1276 926 * 1384 224 154 4 chr9 42470405 42470886 -75391741 - L1MCa LINE L1 -3981 2445 1893 1700 162 36 12 chr9 42470938 42471272 -75391355 - L1MB4 LINE L1 0 6180 5839 1126 208 34 0 chr9 42471272 42471508 -75391119 + MLT1B LTR MaLR 9 252 -138 2121 64 38 0 chr9 42471509 42471776 -75390851 + AluY SINE Alu 3 279 -32 216 0 0 0 chr9 42471776 42471800 -75390827 + (CAAA)n Simple_repeat Simple_repeat 4 27 0 2069 71 0 8 chr9 42471805 42472093 -75390534 + AluY SINE Alu 41 311 0 40 37 0 0 chr9 42472328 42472382 -75390245 + AT_rich Low_complexity Low_complexity 1 54 0 470 275 150 26 chr9 42473807 42474000 -75388627 - MLT1I LTR MaLR -192 217 1 7806 184 32 21 chr9 42475092 42476458 -75386169 + L1PB4 LINE L1 3167 4559 -1587 1811 86 55 24 chr9 42476458 42476713 -75385914 + AluY SINE Alu 35 297 -14 7806 184 32 21 chr9 42476713 42477113 -75385514 + L1PB4 LINE L1 4559 4953 -1193 257 231 0 0 chr9 42477120 42477172 -75385455 + LTR30 LTR ERV1 1 52 -670 2054 139 14 99 chr9 42477195 42477611 -75385016 + LTR12 LTR ERV1 100 480 -234 4260 159 54 36 chr9 42477612 42477962 -75384665 + L1PB4 LINE L1 4957 5299 -857 1707 135 25 53 chr9 42477962 42478281 -75384346 + AluSx SINE Alu 1 310 -2 4260 159 54 36 chr9 42478281 42479091 -75383536 + L1PB4 LINE L1 5299 6156 0 2075 111 0 13 chr9 42479601 42479899 -75382728 + AluSx SINE Alu 1 294 -18 212 221 88 29 chr9 42480741 42480809 -75381818 - MIR SINE MIR -145 117 46 1994 101 42 39 chr9 42481096 42481404 -75381223 - AluSg SINE Alu -1 309 1 301 295 101 17 chr9 42481465 42481669 -75380958 + L1MC2 LINE L1 5693 5819 -302 311 320 38 94 chr9 42481908 42481965 -75380662 + MER68 LTR ERV1 234 293 -269 1625 91 0 5 chr9 42481965 42482185 -75380442 - AluSq SINE Alu -12 301 83 311 320 38 94 chr9 42482185 42482468 -75380159 + MER68 LTR ERV1 293 555 -7 1523 46 0 0 chr9 42483663 42483836 -75378791 + AluY SINE Alu 1 173 -138 398 318 56 13 chr9 42484529 42484762 -75377865 - HAL1 LINE L1 -774 1733 1491 245 309 90 5 chr9 42484781 42484969 -75377658 + HAL1 LINE L1 1490 1693 -814 2066 140 0 3 chr9 42486400 42486708 -75375919 - AluSc SINE Alu 0 309 3 371 180 34 0 chr9 42486977 42487066 -75375561 + L1M4 LINE L1 2866 2957 -3189 4647 238 50 56 chr9 42487177 42488953 -75373674 + L1M4 LINE L1 2969 4733 -1413 1877 177 57 12 chr9 42488953 42489371 -75373256 + L1MC2 LINE L1 5907 6343 -1 1363 258 36 4 chr9 42489376 42489853 -75372774 + L1M4 LINE L1 2162 2653 -3493 509 291 17 47 chr9 42489857 42490033 -75372594 + L1MB8 LINE L1 1491 1660 -4724 2425 74 0 0 chr9 42490033 42490329 -75372298 + AluY SINE Alu 1 296 -15 509 291 17 47 chr9 42490329 42490386 -75372241 + L1MB8 LINE L1 1660 1717 -4667 4956 88 9 0 chr9 42490809 42491574 -75371053 + L1P3 LINE L1 4692 5460 -694 962 111 177 22 chr9 42491574 42491755 -75370872 + THE1B LTR MaLR 156 364 0 1141 237 60 27 chr9 42491757 42492632 -75369995 + L1MB8 LINE L1 2616 3841 -2541 1600 217 50 50 chr9 42492635 42493114 -75369513 + L1MB8 LINE L1 5930 6408 -6 2456 50 0 20 chr9 42493607 42493906 -75368721 + AluY SINE Alu 1 293 -18 283 265 35 65 chr9 42493948 42494118 -75368509 + L1M4 LINE L1 2944 3108 -3038 2351 80 0 0 chr9 42494229 42494528 -75368099 - AluSc SINE Alu -10 299 1 755 234 32 52 chr9 42494901 42495158 -75367469 + L1MC4 LINE L1 7803 7995 0 1845 183 34 47 chr9 42496413 42496884 -75365743 - L1MA7 LINE L1 0 6291 5827 2606 201 35 77 chr9 42496896 42497699 -75364928 - L1MCa LINE L1 -2777 3649 2881 2555 58 0 3 chr9 42497700 42498011 -75364616 - AluY SINE Alu -1 310 1 237 232 29 14 chr9 42498068 42498137 -75364490 - L1MCa LINE L1 -5042 1384 1315 201 39 0 0 chr9 42499923 42499949 -75362678 + (CA)n Simple_repeat Simple_repeat 2 27 0 962 268 92 31 chr9 42500537 42501041 -75361586 + L2 LINE L2 2606 3148 -165 797 232 116 72 chr9 42501436 42501724 -75360903 + L1MC5 LINE L1 7300 7574 -387 2096 109 0 53 chr9 42501724 42502046 -75360581 + AluSx SINE Alu 1 305 -7 797 232 116 72 chr9 42502046 42502378 -75360249 + L1MC5 LINE L1 7574 7947 -14 1445 209 0 35 chr9 42502606 42502929 -75359698 + AluJo SINE Alu 11 323 0 2398 81 0 0 chr9 42503112 42503410 -75359217 - AluY SINE Alu -13 298 1 211 215 13 25 chr9 42503436 42503497 -75359130 + (CATATA)n Simple_repeat Simple_repeat 2 63 -16 342 104 0 0 chr9 42503497 42503545 -75359082 - L1MC1 LINE L1 -17 6316 6269 211 215 13 25 chr9 42503545 42503562 -75359065 + (CATATA)n Simple_repeat Simple_repeat 63 79 0 4526 139 64 31 chr9 42503562 42504043 -75358584 - L1MC1 LINE L1 -11 6322 5799 2222 92 0 16 chr9 42504043 42504359 -75358268 - AluY SINE Alu 0 311 1 4526 139 64 31 chr9 42504359 42504737 -75357890 - L1MC1 LINE L1 -534 5799 5435 663 266 93 83 chr9 42504755 42505237 -75357390 - L1ME3A LINE L1 -329 5841 5355 310 279 58 7 chr9 42505274 42505428 -75357199 - L1ME3A LINE L1 -877 5269 5108 2253 67 7 20 chr9 42505454 42505752 -75356875 + AluY SINE Alu 1 294 -17 21 0 0 0 chr9 42505803 42505824 -75356803 + AT_rich Low_complexity Low_complexity 1 21 0 696 102 0 0 chr9 42506014 42506112 -75356515 - LTR12 LTR ERV1 0 714 617 230 228 98 11 chr9 42506112 42506204 -75356423 - LTR30 LTR ERV1 -70 652 553 630 119 45 95 chr9 42506205 42506440 -75356187 - LTR12 LTR ERV1 -429 285 1 298 302 130 66 chr9 42506449 42506902 -75355725 - L1MEd LINE L1 -5560 559 78 2188 119 0 3 chr9 42508111 42508423 -75354204 + AluY SINE Alu 1 311 0 2418 88 0 3 chr9 42508670 42508978 -75353649 + AluSc SINE Alu 3 309 0 369 285 51 68 chr9 42509826 42510061 -75352566 - MER67C LTR ERV1 -479 231 1 279 255 64 64 chr9 42510438 42510590 -75352037 - MIR3 SINE MIR -36 172 3 288 197 13 40 chr9 42510779 42510855 -75351772 - MER92C LTR ERV1 -2 552 479 1005 215 10 0 chr9 42510902 42511097 -75351530 - MER92C LTR ERV1 -170 384 188 2499 77 0 3 chr9 42511212 42511522 -75351105 + AluY SINE Alu 3 311 0 5905 218 50 45 chr9 42511906 42513257 -75349370 + MLT1A1-int LTR MaLR 379 1735 0 805 213 108 54 chr9 42513257 42513391 -75349236 + MLT1A1 LTR MaLR 1 126 -270 1463 203 140 9 chr9 42513391 42513741 -75348886 - MSTD LTR MaLR 0 396 1 805 213 108 54 chr9 42513741 42513944 -75348683 + MLT1A1 LTR MaLR 126 396 0 880 293 285 41 chr9 42513944 42514776 -75347851 + L2 LINE L2 1459 2493 -821 854 290 58 17 chr9 42514840 42515161 -75347466 - MLT1H LTR MaLR -237 312 4 555 326 79 9 chr9 42515372 42515599 -75347028 + L2 LINE L2 2828 3070 -243 1754 132 17 7 chr9 42516092 42516387 -75346240 - L1MA9 LINE L1 -59 6253 5956 982 241 91 18 chr9 42516389 42516729 -75345898 - L1M4 LINE L1 -1473 4673 4309 240 250 62 10 chr9 42516734 42516830 -75345797 - L1M4 LINE L1 -3002 3144 3044 2404 196 25 6 chr9 42516832 42517322 -75345305 + L1 LINE L1 4660 5158 -988 404 239 37 69 chr9 42517325 42517543 -75345084 - L1M4 LINE L1 -955 5191 4981 410 267 14 48 chr9 42517695 42517772 -75344855 + L1M4 LINE L1 4865 4943 -1203 1801 201 23 58 chr9 42517772 42517976 -75344651 + MLT2D LTR ERVL 1 211 -203 2393 64 11 0 chr9 42517976 42518280 -75344347 + AluY SINE Alu 1 307 0 1801 201 23 58 chr9 42518280 42518451 -75344176 + MLT2D LTR ERVL 211 363 -51 237 108 0 0 chr9 42518451 42518488 -75344139 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 1801 201 23 58 chr9 42518488 42518539 -75344088 + MLT2D LTR ERVL 363 414 0 410 267 14 48 chr9 42518539 42518607 -75344020 + L1M4 LINE L1 4943 5005 -1141 32 57 0 0 chr9 42518667 42518720 -75343907 + AT_rich Low_complexity Low_complexity 1 53 0 341 259 38 51 chr9 42518792 42518950 -75343677 - MIR SINE MIR -5 257 102 2469 70 0 3 chr9 42519036 42519338 -75343289 + AluY SINE Alu 1 301 -10 38 61 0 0 chr9 42519561 42519627 -75343000 + AT_rich Low_complexity Low_complexity 1 66 0 198 270 0 45 chr9 42520431 42520520 -75342107 + MIR SINE MIR 64 148 -114 1822 125 0 4 chr9 42521060 42521308 -75341319 + AluSx SINE Alu 44 290 -22 210 71 0 0 chr9 42521531 42521559 -75341068 + (CA)n Simple_repeat Simple_repeat 2 29 0 2824 10 0 0 chr9 42521616 42521917 -75340710 + AluYa5 SINE Alu 1 301 -10 387 162 0 0 chr9 42522622 42522690 -75339937 - MSTA LTR MaLR 0 428 361 25 90 0 0 chr9 42524076 42524143 -75338484 + AT_rich Low_complexity Low_complexity 1 67 0 1905 119 43 36 chr9 42524383 42524685 -75337942 + AluSx SINE Alu 1 304 -8 2153 133 0 3 chr9 42526496 42526805 -75335822 + AluSg SINE Alu 1 308 -2 180 174 65 0 chr9 42526983 42527029 -75335598 - MIR SINE MIR -118 144 96 1170 171 20 0 chr9 42527439 42527638 -75334989 - LTR12 LTR ERV1 -133 581 379 288 328 16 0 chr9 42527640 42527765 -75334862 - LTR30 LTR ERV1 -79 643 517 834 80 18 0 chr9 42527787 42527900 -75334727 - LTR12 LTR ERV1 -599 115 1 2165 117 3 16 chr9 42527912 42528228 -75334399 - AluSq SINE Alu -1 312 1 274 192 0 0 chr9 42528230 42528282 -75334345 - MER5A DNA MER1_type -115 74 23 4214 134 56 42 chr9 42528301 42528449 -75334178 - LTR39 LTR ERV1 -18 765 620 2456 46 0 0 chr9 42528449 42528752 -75333875 - AluY SINE Alu 0 303 1 4214 134 56 42 chr9 42528752 42529357 -75333270 - LTR39 LTR ERV1 -163 620 1 390 272 64 16 chr9 42529426 42529551 -75333076 - MER58B DNA MER1_type -14 327 197 2502 69 0 3 chr9 42529555 42529860 -75332767 + AluY SINE Alu 1 304 -7 228 62 250 0 chr9 42530253 42530301 -75332326 + AluSc SINE Alu 238 297 -2 2508 82 0 0 chr9 42532111 42532417 -75330210 + AluY SINE Alu 1 306 -5 2348 82 10 3 chr9 42532443 42532737 -75329890 + AluY SINE Alu 2 297 -14 2237 115 0 0 chr9 42532764 42533068 -75329559 + AluSx SINE Alu 5 308 -4 1145 95 0 0 chr9 42533081 42533228 -75329399 + AluSq SINE Alu 152 298 -15 240 200 0 0 chr9 42533705 42533745 -75328882 + LTR40a LTR ERVL 6 45 -474 321 262 66 0 chr9 42533853 42533975 -75328652 - L1M3e LINE L1 -5546 1484 1355 * 758 196 7 20 chr9 42533974 42534127 -75328500 - L1M3e LINE L1 -6879 151 1 2122 138 0 3 chr9 42534598 42534910 -75327717 + AluSx SINE Alu 2 312 0 180 174 65 0 chr9 42535086 42535132 -75327495 - MIR SINE MIR -118 144 96 1270 113 148 0 chr9 42535541 42535744 -75326883 - LTR12 LTR ERV1 0 714 482 268 304 32 16 chr9 42535746 42535871 -75326756 - LTR30 LTR ERV1 -79 643 517 834 66 10 0 chr9 42535871 42536006 -75326621 - LTR12 LTR ERV1 -463 251 1 2161 120 3 16 chr9 42536018 42536334 -75326293 - AluSq SINE Alu -1 312 1 274 192 0 0 chr9 42536336 42536388 -75326239 - MER5A DNA MER1_type -115 74 23 4119 138 56 44 chr9 42536407 42536555 -75326072 - LTR39 LTR ERV1 -18 765 620 2441 46 0 0 chr9 42536555 42536858 -75325769 - AluY SINE Alu 0 303 1 4119 138 56 44 chr9 42536858 42537464 -75325163 - LTR39 LTR ERV1 -163 620 1 400 272 64 16 chr9 42537533 42537658 -75324969 - MER58B DNA MER1_type -14 327 197 2331 59 6 56 chr9 42537662 42537983 -75324644 + AluY SINE Alu 1 305 -6 2591 47 0 3 chr9 42538985 42539286 -75323341 + AluY SINE Alu 1 300 -11 1792 127 65 10 chr9 42539334 42539626 -75323001 + AluSx SINE Alu 1 308 -4 372 217 0 0 chr9 42539743 42539835 -75322792 + CT-rich Low_complexity Low_complexity 4 95 0 466 276 116 88 chr9 42540535 42540991 -75321636 - L2 LINE L2 0 3313 2845 33 56 0 0 chr9 42541206 42541260 -75321367 + AT_rich Low_complexity Low_complexity 1 54 0 2397 82 0 0 chr9 42541415 42541707 -75320920 + AluSg SINE Alu 1 292 -18 1196 99 0 163 chr9 42542473 42542694 -75319933 - AluSq SINE Alu -128 185 1 770 200 65 0 chr9 42542698 42542926 -75319701 - L1M4 LINE L1 -741 5437 5197 2879 216 61 26 chr9 42543026 42543101 -75319526 - L1M4 LINE L1 -913 5233 5162 2085 131 0 0 chr9 42543101 42543391 -75319236 + AluSx SINE Alu 1 290 -22 2879 216 61 26 chr9 42543391 42543414 -75319213 - L1M4 LINE L1 -984 5162 5141 382 158 0 13 chr9 42543414 42543490 -75319137 - L1MA7 LINE L1 -7 6284 6210 2879 216 61 26 chr9 42543490 42544277 -75318350 - L1M4 LINE L1 -1005 5141 4316 1854 142 129 3 chr9 42544277 42544609 -75318018 - MER57A LTR ERV1 -25 378 5 1646 169 38 0 chr9 42544611 42544878 -75317749 + AluJo SINE Alu 19 295 -17 2369 109 0 0 chr9 42545025 42545337 -75317290 + AluSx SINE Alu 1 312 0 31 26 0 0 chr9 42545372 42545410 -75317217 + AT_rich Low_complexity Low_complexity 1 38 0 517 251 73 17 chr9 42545570 42545749 -75316878 - L1MC4 LINE L1 -140 7902 7714 1884 210 59 0 chr9 42545751 42546142 -75316485 - L1MC4 LINE L1 -371 7671 7258 409 279 71 14 chr9 42546779 42546919 -75315708 + MIR SINE MIR 72 219 -43 188 33 0 33 chr9 42546992 42547022 -75315605 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2668 208 125 81 chr9 42547080 42548027 -75314600 + LTR28 LTR ERV1 1 988 -32 430 159 75 37 chr9 42548029 42548136 -75314491 + LTR27 LTR ERV1 525 635 -1 4120 129 29 2 chr9 42548242 42548860 -75313767 + MER41B LTR ERV1 1 635 0 252 191 0 0 chr9 42549125 42549172 -75313455 - MIR SINE MIR -133 129 83 862 220 18 35 chr9 42550040 42550267 -75312360 - L1M4 LINE L1 -1825 4321 4099 1311 182 17 4 chr9 42550273 42550504 -75312123 - MER54B LTR ERVL 0 793 560 499 192 115 10 chr9 42550499 42550603 -75312024 - MER54A LTR ERVL -271 630 516 * 1894 110 4 0 chr9 42553838 42554093 -75308534 - AluSx SINE Alu -13 299 44 535 133 0 22 chr9 42554115 42554205 -75308422 - AluS SINE Alu -224 89 2 2209 108 11 0 chr9 42554464 42554750 -75307877 - AluSq SINE Alu -23 290 2 25 31 0 0 chr9 42554876 42554908 -75307719 + AT_rich Low_complexity Low_complexity 1 32 0 2551 51 14 0 chr9 42555057 42555352 -75307275 + AluY SINE Alu 1 299 -12 746 187 136 51 chr9 42555361 42555546 -75307081 + L1ME2 LINE L1 5608 5822 -342 2133 97 10 7 chr9 42555546 42555836 -75306791 - AluSx SINE Alu -21 291 1 746 187 136 51 chr9 42555836 42555907 -75306720 + L1ME2 LINE L1 5822 5886 -278 413 198 0 153 chr9 42556187 42556243 -75306384 + MER58B DNA MER1_type 208 271 -2149 2565 157 39 35 chr9 42556243 42556728 -75305899 - LTR45B LTR ERV1 0 489 3 413 198 0 153 chr9 42556728 42556780 -75305847 + MER58B DNA MER1_type 271 287 -2133 2734 170 85 2 chr9 42556780 42557287 -75305340 - MER44D DNA MER2_type 0 605 2 413 198 0 153 chr9 42557287 42557334 -75305293 + MER58B DNA MER1_type 287 340 -1 293 148 0 19 chr9 42557722 42557776 -75304851 + L1ME LINE L1 5770 5822 -299 2425 88 0 0 chr9 42557784 42558080 -75304547 + AluY SINE Alu 1 296 -15 6239 152 26 7 chr9 42558191 42559304 -75303323 + L1P LINE L1 4195 5328 -818 233 248 98 53 chr9 42559644 42559777 -75302850 - L1MEd LINE L1 -5979 140 2 2441 82 3 0 chr9 42560640 42560946 -75301681 - AluY SINE Alu -4 307 1 23 68 0 0 chr9 42561050 42561094 -75301533 + AT_rich Low_complexity Low_complexity 1 44 0 23 33 0 0 chr9 42561284 42561314 -75301313 + AT_rich Low_complexity Low_complexity 1 30 0 1380 233 50 1 chr9 42562365 42562833 -75299794 + MER89 LTR ERV1 3 555 -4 2192 127 0 13 chr9 42562838 42563153 -75299474 - AluSx SINE Alu -1 311 1 4068 265 63 70 chr9 42563166 42564836 -75297791 + MER89-int LTR ERV1 2 1660 -5141 591 296 133 5 chr9 42565280 42565483 -75297144 - MIR SINE MIR -30 232 4 252 395 31 8 chr9 42566027 42566156 -75296471 + MIR3 SINE MIR 44 175 -33 2296 62 22 0 chr9 42566164 42566465 -75296162 + AluY SINE Alu 2 308 0 313 188 14 0 chr9 42566687 42566756 -75295871 + Alu SINE Alu 227 296 -5 2363 67 0 17 chr9 42566779 42567076 -75295551 + AluY SINE Alu 1 292 -19 2470 58 0 16 chr9 42567361 42567669 -75294958 - AluY SINE Alu -8 303 1 614 291 133 5 chr9 42567858 42568061 -75294566 - MIR SINE MIR -30 232 4 253 388 39 8 chr9 42568605 42568734 -75293893 + MIR3 SINE MIR 43 175 -33 2265 76 22 0 chr9 42568742 42569043 -75293584 + AluY SINE Alu 2 308 0 545 294 43 47 chr9 42569247 42569515 -75293112 - MLT1G LTR MaLR -170 425 144 1059 241 121 69 chr9 42570663 42571256 -75291371 + MLT1E3 LTR MaLR 1 624 0 1966 128 0 42 chr9 42572158 42572291 -75290336 + AluSx SINE Alu 3 140 -172 2401 80 0 10 chr9 42572291 42572602 -75290025 + AluY SINE Alu 1 308 -3 1966 128 0 42 chr9 42572602 42572774 -75289853 + AluSx SINE Alu 140 295 -17 2031 120 0 3 chr9 42573588 42573897 -75288730 - AluSx SINE Alu 0 308 1 26 0 0 0 chr9 42574485 42574511 -75288116 + AT_rich Low_complexity Low_complexity 1 26 0 301 308 25 66 chr9 42574711 42574997 -75287630 + L1MC4a LINE L1 5636 5909 -1899 302 280 152 24 chr9 42575189 42575314 -75287313 - MIR SINE MIR -121 141 1 2059 100 0 24 chr9 42575382 42575671 -75286956 + AluY SINE Alu 1 282 -29 287 335 124 54 chr9 42576012 42576116 -75286511 + L2 LINE L2 2242 2337 -977 1749 99 39 46 chr9 42576116 42576398 -75286229 - AluSx SINE Alu -15 297 18 287 335 124 54 chr9 42576398 42576738 -75285889 + L2 LINE L2 2337 2717 -597 2527 62 0 3 chr9 42577464 42577773 -75284854 - AluY SINE Alu -3 308 1 431 311 161 31 chr9 42577825 42578111 -75284516 + L2 LINE L2 2912 3234 -38 589 155 146 0 chr9 42578950 42579053 -75283574 + THE1B LTR MaLR 21 138 -226 1621 203 90 123 chr9 42580544 42581081 -75281546 + MLT1E2 LTR MaLR 1 517 -109 2414 102 0 0 chr9 42581081 42581394 -75281233 - AluSq SINE Alu 0 313 1 1621 203 90 123 chr9 42581394 42581501 -75281126 + MLT1E2 LTR MaLR 517 626 0 449 209 75 67 chr9 42581580 42581714 -75280913 + MLT1E1 LTR MaLR 520 654 0 1346 151 70 126 chr9 42581877 42582046 -75280581 + THE1C LTR MaLR 1 178 -197 1600 92 9 5 chr9 42582046 42582263 -75280364 + L1PA8 LINE L1 5950 6167 -5 1346 151 70 126 chr9 42582263 42582490 -75280137 + THE1C LTR MaLR 178 375 0 3002 64 0 3 chr9 42582490 42582866 -75279761 + THE1C-int LTR MaLR 1 375 -1205 24 53 0 0 chr9 42583179 42583217 -75279410 + AT_rich Low_complexity Low_complexity 1 38 0 2274 88 0 7 chr9 42585443 42585780 -75276847 + AluSq SINE Alu 1 313 0 235 298 43 62 chr9 42585999 42586160 -75276467 + L1 LINE L1 3544 3701 -2445 2522 32 0 0 chr9 42586272 42586603 -75276024 - AluY SINE Alu 0 331 1 1682 168 77 12 chr9 42586754 42587347 -75275280 - MER39 LTR ERV1 -1 706 1 257 0 30 0 chr9 42588445 42588478 -75274149 + (TG)n Simple_repeat Simple_repeat 1 34 0 264 77 0 0 chr9 42588478 42588517 -75274110 + (GA)n Simple_repeat Simple_repeat 2 40 0 4324 166 61 24 chr9 42589350 42590312 -75272315 - L1MB1 LINE L1 -5 6163 5160 1438 179 8 19 chr9 42590585 42590842 -75271785 + L1PA16 LINE L1 5904 6157 -9 189 319 14 14 chr9 42591790 42591862 -75270765 + L2 LINE L2 3193 3264 -8 206 200 60 40 chr9 42592063 42592113 -75270514 - L2 LINE L2 -518 2796 2746 2508 83 0 3 chr9 42592538 42592850 -75269777 - AluY SINE Alu 0 311 1 1075 205 10 0 chr9 42592963 42593158 -75269469 + MER92C LTR ERV1 188 384 -170 266 239 0 15 chr9 42593214 42593281 -75269346 + MER92C LTR ERV1 487 552 -2 261 267 60 64 chr9 42593470 42593622 -75269005 + MIR3 SINE MIR 3 172 -36 782 248 56 56 chr9 42593999 42594269 -75268358 + MER67C LTR ERV1 1 270 -440 3268 132 14 51 chr9 42594276 42594395 -75268232 + MER4B LTR ERV1 1 123 -487 2393 133 15 3 chr9 42594395 42594734 -75267893 + MER61A LTR ERV1 1 343 0 3268 132 14 51 chr9 42594734 42595207 -75267420 + MER4B LTR ERV1 123 571 -39 1958 187 62 17 chr9 42595243 42595661 -75266966 + MER67C LTR ERV1 274 710 0 706 240 77 5 chr9 42595693 42595889 -75266738 - MER58C DNA MER1_type -1 214 5 357 197 0 0 chr9 42596090 42596151 -75266476 + MER82 DNA MER2_type 1 61 -592 2491 168 68 50 chr9 42596152 42596711 -75265916 - LTR48 LTR ERV1 0 787 219 2405 69 0 10 chr9 42596711 42597014 -75265613 + AluY SINE Alu 1 300 -11 2360 107 0 7 chr9 42597016 42597326 -75265301 + AluSg SINE Alu 1 308 -2 732 204 23 136 chr9 42597382 42597501 -75265126 - LTR48 LTR ERV1 -552 235 161 2208 149 27 43 chr9 42597501 42597871 -75264756 + THE1B LTR MaLR 1 364 0 732 204 23 136 chr9 42597871 42598016 -75264611 - LTR48 LTR ERV1 -626 161 1 * 2418 236 47 11 chr9 42598016 42598566 -75264061 + MER82 DNA MER2_type 59 628 -25 286 237 0 0 chr9 42598566 42598625 -75264002 + MER82 DNA MER2_type 593 651 -2 2151 122 7 0 chr9 42599106 42599402 -75263225 - AluSq SINE Alu -15 298 1 31 44 0 0 chr9 42599846 42599891 -75262736 + AT_rich Low_complexity Low_complexity 1 45 0 30 69 0 0 chr9 42600446 42600504 -75262123 + AT_rich Low_complexity Low_complexity 1 58 0 906 242 126 53 chr9 42600531 42600927 -75261700 + MLT2B1 LTR ERVL 20 444 -76 1625 154 51 73 chr9 42600937 42601255 -75261372 + MER47A DNA MER2_type 2 312 -2011 4439 79 5 16 chr9 42601255 42601639 -75260988 + MER41A LTR ERV1 1 379 -175 2246 110 0 0 chr9 42601639 42601938 -75260689 + AluSg SINE Alu 1 299 -11 4439 79 5 16 chr9 42601938 42602113 -75260514 + MER41A LTR ERV1 379 554 0 1625 154 51 73 chr9 42602113 42602165 -75260462 + MER47A DNA MER2_type 312 364 -2 315 49 0 0 chr9 42602165 42602206 -75260421 + (TG)n Simple_repeat Simple_repeat 2 42 0 1363 200 54 11 chr9 42602600 42602880 -75259747 + AluJb SINE Alu 1 292 -20 2237 98 0 16 chr9 42603020 42603336 -75259291 - AluSx SINE Alu -1 311 1 341 345 85 20 chr9 42604077 42604277 -75258350 - MIR SINE MIR -37 225 13 799 171 16 0 chr9 42604432 42604561 -75258066 + FLAM_C SINE Alu 1 131 -2 24 32 0 0 chr9 42604811 42604842 -75257785 + AT_rich Low_complexity Low_complexity 1 31 0 463 221 29 43 chr9 42605167 42605307 -75257320 - MIR SINE MIR 0 262 125 1490 195 28 83 chr9 42605331 42605713 -75256914 - MLT1B LTR MaLR 0 390 47 2147 134 0 6 chr9 42605713 42606027 -75256600 + AluSx SINE Alu 1 312 0 1490 195 28 83 chr9 42606027 42606072 -75256555 - MLT1B LTR MaLR -343 47 1 246 62 0 0 chr9 42607375 42607407 -75255220 + (CA)n Simple_repeat Simple_repeat 2 33 0 281 236 0 0 chr9 42607678 42607733 -75254894 + MIR3 SINE MIR 108 162 -46 189 0 0 0 chr9 42608891 42608912 -75253715 + (CA)n Simple_repeat Simple_repeat 1 21 0 2287 131 51 22 chr9 42610588 42611032 -75251595 - LTR56 LTR ERV1 0 437 10 2493 33 3 13 chr9 42611397 42611698 -75250929 + AluY SINE Alu 1 298 -13 1966 126 23 23 chr9 42611999 42612301 -75250326 + AluSq SINE Alu 1 302 -11 2230 153 26 48 chr9 42612915 42613226 -75249401 - MER39 LTR ERV1 -2 705 406 4443 132 18 40 chr9 42613226 42613932 -75248695 - LTR8 LTR ERV1 0 691 1 2230 153 26 48 chr9 42613932 42614076 -75248551 - MER39 LTR ERV1 -301 406 260 535 213 94 8 chr9 42614048 42614175 -75248452 - MER39 LTR ERV1 -569 138 1 * 1981 159 3 0 chr9 42614387 42614695 -75247932 + AluSx SINE Alu 1 309 -3 1340 98 5 5 chr9 42614772 42614965 -75247662 - AluY SINE Alu -7 304 112 2233 137 50 17 chr9 42615486 42615908 -75246719 - LTR56 LTR ERV1 0 445 10 2491 43 3 13 chr9 42616273 42616577 -75246050 + AluY SINE Alu 1 301 -10 2130 115 0 32 chr9 42616880 42617192 -75245435 + AluSq SINE Alu 1 302 -11 198 0 0 0 chr9 42617510 42617532 -75245095 + (T)n Simple_repeat Simple_repeat 1 22 0 22 0 0 0 chr9 42617635 42617657 -75244970 + AT_rich Low_complexity Low_complexity 1 22 0 2329 62 0 10 chr9 42617727 42618044 -75244583 + AluY SINE Alu 1 311 0 1841 157 17 0 chr9 42619111 42619404 -75243223 - AluSx SINE Alu -14 298 1 2031 131 10 0 chr9 42619963 42620288 -75242339 + AluSx SINE Alu 1 312 0 2332 59 0 16 chr9 42621675 42621982 -75240645 - AluY SINE Alu -9 302 1 371 223 34 126 chr9 42622486 42622724 -75239903 - L2 LINE L2 0 3313 3098 2268 115 0 0 chr9 42622897 42623202 -75239425 + AluSx SINE Alu 1 305 -7 29 78 0 0 chr9 42623379 42623443 -75239184 + AT_rich Low_complexity Low_complexity 1 64 0 21 0 0 0 chr9 42623914 42623935 -75238692 + AT_rich Low_complexity Low_complexity 1 21 0 2155 123 7 0 chr9 42624214 42624514 -75238113 - AluSx SINE Alu -10 302 1 201 224 112 41 chr9 42624850 42624948 -75237679 - L2 LINE L2 -1582 1732 1628 192 311 27 40 chr9 42625915 42625989 -75236638 - MER5A DNA MER1_type 0 189 117 1565 74 69 0 chr9 42626064 42626266 -75236361 - AluSq SINE Alu -97 216 1 265 264 0 0 chr9 42626403 42626456 -75236171 - MLT1H1 LTR MaLR -361 194 142 21 36 0 0 chr9 42626730 42626758 -75235869 + AT_rich Low_complexity Low_complexity 1 28 0 1201 216 179 76 chr9 42627605 42628198 -75234429 + MLT1E1 LTR MaLR 1 654 0 2020 125 0 39 chr9 42629095 42629228 -75233399 + AluSx SINE Alu 3 140 -172 2423 75 0 10 chr9 42629228 42629536 -75233091 + AluY SINE Alu 1 305 -6 2020 125 0 39 chr9 42629536 42629707 -75232920 + AluSx SINE Alu 140 295 -17 2061 117 0 3 chr9 42630521 42630830 -75231797 - AluSx SINE Alu 0 308 1 26 0 0 0 chr9 42631418 42631444 -75231183 + AT_rich Low_complexity Low_complexity 1 26 0 316 304 25 66 chr9 42631645 42631931 -75230696 + L1MC4a LINE L1 5636 5909 -1899 359 248 152 24 chr9 42632122 42632247 -75230380 - MIR SINE MIR -121 141 1 1999 109 0 41 chr9 42632315 42632609 -75230018 + AluY SINE Alu 1 282 -29 266 345 108 62 chr9 42632953 42633052 -75229575 + L2 LINE L2 2242 2335 -979 219 69 0 0 chr9 42633052 42633081 -75229546 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 1697 84 4 65 chr9 42633089 42633351 -75229276 - AluSx SINE Alu -49 263 18 266 345 108 62 chr9 42633351 42633697 -75228930 + L2 LINE L2 2341 2717 -597 301 316 176 34 chr9 42634401 42634423 -75228204 + L2 LINE L2 2827 2844 -428 2633 48 0 3 chr9 42634423 42634735 -75227892 - AluY SINE Alu 0 311 1 301 316 176 34 chr9 42634735 42635069 -75227558 + L2 LINE L2 2844 3234 -38 616 155 140 17 chr9 42635879 42636011 -75226616 + THE1B LTR MaLR 7 138 -226 2834 0 0 10 chr9 42636228 42636535 -75226092 - AluYa5 SINE Alu -7 304 1 22 0 0 0 chr9 42636733 42636755 -75225872 + AT_rich Low_complexity Low_complexity 1 22 0 2282 60 10 3 chr9 42636903 42637201 -75225426 + AluY SINE Alu 1 300 -11 1532 194 101 100 chr9 42638121 42638669 -75223958 + MLT1E2 LTR MaLR 1 521 -105 2475 96 0 0 chr9 42638669 42638981 -75223646 - AluSq SINE Alu -1 312 1 1532 194 101 100 chr9 42638981 42639088 -75223539 + MLT1E2 LTR MaLR 521 626 0 462 209 75 67 chr9 42639167 42639301 -75223326 + MLT1E1 LTR MaLR 520 654 0 2005 101 49 111 chr9 42639464 42639633 -75222994 + THE1B LTR MaLR 1 179 -185 1525 92 10 10 chr9 42639633 42639865 -75222762 + L1PA8 LINE L1 5950 6181 0 2005 101 49 111 chr9 42639865 42640082 -75222545 + THE1B LTR MaLR 179 364 0 3026 64 0 0 chr9 42640082 42640457 -75222170 + THE1B-int LTR MaLR 1 375 -1205 22 0 0 0 chr9 42640772 42640794 -75221833 + AT_rich Low_complexity Low_complexity 1 22 0 2189 109 6 3 chr9 42643035 42643373 -75219254 + AluSq SINE Alu 1 313 0 410 321 90 58 chr9 42643383 42643794 -75218833 + L1M4 LINE L1 3324 3747 -2399 1689 163 77 12 chr9 42644007 42644600 -75218027 - MER39 LTR ERV1 -1 706 1 288 0 0 0 chr9 42645700 42645732 -75216895 + (TG)n Simple_repeat Simple_repeat 1 32 0 * 291 28 0 0 chr9 42645731 42645767 -75216860 + (GA)n Simple_repeat Simple_repeat 1 36 0 4310 166 61 15 chr9 42646599 42647559 -75215068 - L1MB1 LINE L1 -5 6163 5160 1470 164 8 20 chr9 42647832 42648082 -75214545 + L1PA16 LINE L1 5904 6150 -16 215 315 90 0 chr9 42649018 42649107 -75213520 + L2 LINE L2 3209 3305 -8 185 220 60 40 chr9 42649308 42649358 -75213269 - L2 LINE L2 -518 2796 2746 2545 72 0 3 chr9 42649798 42650104 -75212523 - AluY SINE Alu -6 305 1 1018 215 10 0 chr9 42650217 42650412 -75212215 + MER92C LTR ERV1 188 384 -170 297 197 13 40 chr9 42650459 42650535 -75212092 + MER92C LTR ERV1 479 552 -2 277 255 64 64 chr9 42650724 42650876 -75211751 + MIR3 SINE MIR 3 172 -36 765 252 56 56 chr9 42651253 42651523 -75211104 + MER67C LTR ERV1 1 270 -440 3242 136 12 50 chr9 42651530 42651649 -75210978 + MER4B LTR ERV1 1 123 -487 2376 135 15 6 chr9 42651649 42651989 -75210638 + MER61A LTR ERV1 1 343 0 3242 136 12 50 chr9 42651989 42652463 -75210164 + MER4B LTR ERV1 123 571 -39 1911 194 62 17 chr9 42652499 42652917 -75209710 + MER67C LTR ERV1 274 710 0 687 237 88 10 chr9 42652960 42653154 -75209473 - MER58C DNA MER1_type -1 214 6 357 197 0 0 chr9 42653355 42653416 -75209211 + MER82 DNA MER2_type 1 61 -592 2545 161 68 50 chr9 42653417 42653976 -75208651 - LTR48 LTR ERV1 0 787 219 2412 69 0 10 chr9 42653976 42654282 -75208345 + AluY SINE Alu 1 303 -8 2402 97 0 7 chr9 42654284 42654594 -75208033 + AluSg SINE Alu 1 308 -2 207 0 0 0 chr9 42654633 42654656 -75207971 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 707 208 19 138 chr9 42654659 42654773 -75207854 - LTR48 LTR ERV1 -558 229 162 2207 149 27 43 chr9 42654773 42655143 -75207484 + THE1B LTR MaLR 1 364 0 707 208 19 138 chr9 42655143 42655288 -75207339 - LTR48 LTR ERV1 -625 162 1 * 2525 236 48 2 chr9 42655288 42655833 -75206794 + MER82 DNA MER2_type 59 628 -25 307 220 0 0 chr9 42655833 42655892 -75206735 + MER82 DNA MER2_type 593 651 -2 2215 117 0 3 chr9 42656373 42656672 -75205955 - AluSq SINE Alu -15 298 1 936 262 124 17 chr9 42656676 42656697 -75205930 - MER110A LTR ERV1 -12 456 439 1812 202 54 42 chr9 42656697 42657196 -75205431 + MLT1D LTR MaLR 1 505 0 936 262 124 17 chr9 42657196 42657586 -75205041 - MER110A LTR ERV1 -29 439 1 339 175 0 0 chr9 42658676 42658733 -75203894 + MER57-int LTR ERV1 7249 7305 -232 943 196 75 8 chr9 42658750 42659015 -75203612 + LTR54B LTR ERV1 212 494 -4 1639 176 66 0 chr9 42659030 42659319 -75203308 + AluJb SINE Alu 1 308 -4 2493 164 24 19 chr9 42659596 42660022 -75202605 + MSTB1 LTR MaLR 5 432 0 315 237 144 50 chr9 42660205 42660344 -75202283 + Charlie8 DNA MER1_type 30 181 -2236 2463 65 0 3 chr9 42661661 42661968 -75200659 - AluY SINE Alu -5 306 1 373 296 84 0 chr9 42662408 42662550 -75200077 + MLT1I LTR MaLR 13 166 -243 24 32 0 0 chr9 42662818 42662849 -75199778 + AT_rich Low_complexity Low_complexity 1 31 0 2457 67 6 13 chr9 42663329 42663642 -75198985 - AluY SINE Alu 0 311 1 458 277 18 57 chr9 42663643 42663925 -75198702 - L1ME3 LINE L1 -214 5948 5678 2480 66 3 0 chr9 42664216 42664519 -75198108 + AluY SINE Alu 1 304 -7 2564 49 3 3 chr9 42664992 42665299 -75197328 + AluY SINE Alu 1 307 -4 207 0 0 0 chr9 42665299 42665322 -75197305 + (TA)n Simple_repeat Simple_repeat 2 24 0 2311 190 27 5 chr9 42665322 42665509 -75197118 + MSTB LTR MaLR 8 189 -237 1774 149 3 3 chr9 42665509 42665791 -75196836 + AluSx SINE Alu 1 282 -30 807 134 0 0 chr9 42665679 42665791 -75196836 + AluSg/x SINE Alu 171 322 0 361 0 0 0 chr9 42665791 42665831 -75196796 + (TAAA)n Simple_repeat Simple_repeat 2 168 0 2311 190 27 5 chr9 42665831 42666052 -75196575 + MSTB LTR MaLR 188 426 0 1872 117 0 0 chr9 42666079 42666328 -75196299 + AluSx SINE Alu 44 292 -20 659 203 38 0 chr9 42666541 42666699 -75195928 - MER96B DNA MER1_type? -13 404 241 231 263 38 25 chr9 42667038 42667118 -75195509 + MER94 DNA DNA 1 81 -53 896 96 0 0 chr9 42667243 42667397 -75195230 + AluY SINE Alu 175 311 0 2203 100 7 0 chr9 42667568 42667859 -75194768 - AluSq SINE Alu -20 293 1 1412 234 117 60 chr9 42668396 42668536 -75194091 + MER89-int LTR ERV1 1922 2053 -4748 1910 152 9 25 chr9 42668536 42668852 -75193775 - AluSx SINE Alu -1 311 1 1412 234 117 60 chr9 42668852 42669083 -75193544 + MER89-int LTR ERV1 2053 2269 -4532 1755 155 3 67 chr9 42669083 42669399 -75193228 + AluSx SINE Alu 1 296 -16 1412 234 117 60 chr9 42669399 42669608 -75193019 + MER89-int LTR ERV1 2269 2536 -4265 4973 233 57 62 chr9 42669839 42671249 -75191378 + MER89-int LTR ERV1 354 3897 -2904 2196 83 0 23 chr9 42671399 42671699 -75190928 - AluY SINE Alu -18 293 1 2177 192 55 59 chr9 42671798 42672308 -75190319 + MER89-int LTR ERV1 6052 6559 -242 1082 222 66 82 chr9 42672308 42672935 -75189692 + MER52A LTR ERV1 711 1470 -285 513 274 13 13 chr9 42672943 42673096 -75189531 + MER52A LTR ERV1 1603 1755 0 1651 148 45 39 chr9 42673285 42673696 -75188931 - LTR12 LTR ERV1 -234 480 1 704 221 27 0 chr9 42673697 42673846 -75188781 + MER89-int LTR ERV1 6649 6801 0 1338 183 26 57 chr9 42673910 42674255 -75188372 + MER89 LTR ERV1 165 559 0 2733 159 29 23 chr9 42674893 42675377 -75187250 + LTR22B LTR ERVK 1 487 -5 2254 132 0 54 chr9 42675565 42675935 -75186692 - L1PB4 LINE L1 -13 6143 5794 380 348 14 0 chr9 42676101 42676239 -75186388 - L2 LINE L2 -454 2860 2721 22 70 0 0 chr9 42676914 42676957 -75185670 + AT_rich Low_complexity Low_complexity 1 43 0 317 259 12 12 chr9 42677820 42677905 -75184722 - MER5A DNA MER1_type -102 87 3 1934 73 15 27 chr9 42679013 42679273 -75183354 + AluSx SINE Alu 52 308 -4 186 43 0 0 chr9 42679273 42679296 -75183331 + (TA)n Simple_repeat Simple_repeat 1 23 0 1464 161 62 26 chr9 42679319 42679624 -75183003 + THE1C LTR MaLR 1 316 -59 394 162 0 0 chr9 42681255 42681323 -75181304 + THE1C LTR MaLR 361 428 0 2813 13 0 3 chr9 42681632 42681941 -75180686 - AluYb8 SINE Alu -10 308 1 2480 69 0 3 chr9 42681966 42682272 -75180355 - AluY SINE Alu -6 305 1 367 256 37 61 chr9 42682352 42682516 -75180111 + MIR SINE MIR 98 257 -5 32 57 0 0 chr9 42682588 42682641 -75179986 + AT_rich Low_complexity Low_complexity 1 53 0 396 267 14 48 chr9 42682701 42682769 -75179858 - L1M4 LINE L1 -1141 5005 4936 1603 183 15 154 chr9 42682769 42683045 -75179582 - MLT2D LTR ERVL 0 414 232 2336 67 11 0 chr9 42683045 42683329 -75179298 - AluY SINE Alu -24 287 1 1603 183 15 154 chr9 42683329 42683533 -75179094 - MLT2D LTR ERVL -182 232 1 396 267 14 48 chr9 42683533 42683610 -75179017 - L1M4 LINE L1 -1210 4936 4865 406 244 37 69 chr9 42683768 42683985 -75178642 + L1M4 LINE L1 4981 5190 -956 * 2501 196 24 4 chr9 42683982 42684478 -75178149 - L1 LINE L1 -981 5165 4660 278 253 63 0 chr9 42684480 42684575 -75178052 + L1M4 LINE L1 3044 3144 -3002 923 250 91 18 chr9 42684580 42684920 -75177707 + L1M4 LINE L1 4309 4673 -1473 1824 122 17 7 chr9 42684922 42685217 -75177410 + L1MA9 LINE L1 5956 6253 -59 2817 3 0 0 chr9 42685541 42685841 -75176786 - AluYa5 SINE Alu -11 300 1 542 338 31 18 chr9 42686019 42686244 -75176383 - L2 LINE L2 -243 3070 2843 868 265 67 30 chr9 42686458 42686756 -75175871 + MLT1H LTR MaLR 4 312 -237 917 291 298 39 chr9 42686874 42687670 -75174957 - L2 LINE L2 -854 2460 1459 845 214 108 54 chr9 42687670 42687873 -75174754 - MLT1A1 LTR MaLR 0 396 205 1601 206 140 9 chr9 42687873 42688223 -75174404 + MSTD LTR MaLR 1 396 0 845 214 108 54 chr9 42688223 42688357 -75174270 - MLT1A1 LTR MaLR -191 205 1 8261 205 38 46 chr9 42688357 42690105 -75172522 - MLT1A1-int LTR MaLR 0 1735 2 1130 202 113 64 chr9 42690107 42690174 -75172453 - MLT1A1 LTR MaLR -1 364 302 2137 126 7 0 chr9 42690174 42690475 -75172152 + AluSq SINE Alu 1 303 -10 1130 202 113 64 chr9 42690475 42690753 -75171874 - MLT1A1 LTR MaLR -63 302 2 590 304 82 0 chr9 42690762 42690956 -75171671 - L2 LINE L2 -1859 1455 1246 304 346 10 0 chr9 42690972 42691076 -75171551 - MIR SINE MIR -61 147 43 358 206 0 0 chr9 42691835 42691903 -75170724 - MER105 DNA DNA 0 204 137 2624 53 0 0 chr9 42693548 42693851 -75168776 + AluY SINE Alu 1 303 -8 311 313 54 7 chr9 42694697 42694844 -75167783 + MIR SINE MIR 39 192 -70 2909 9 0 9 chr9 42694969 42695290 -75167337 - AluYb8 SINE Alu 0 318 1 595 208 195 0 chr9 42696090 42696244 -75166383 + MIR SINE MIR 36 219 -43 2091 144 64 25 chr9 42696756 42697294 -75165333 + MLT2A2 LTR ERVL 4 554 0 2040 125 0 7 chr9 42697519 42697833 -75164794 + AluSg SINE Alu 1 312 0 2628 49 0 0 chr9 42698150 42698457 -75164170 + AluY SINE Alu 1 307 -4 358 234 21 0 chr9 42698812 42698906 -75163721 + MIR SINE MIR 75 170 -92 23 33 0 0 chr9 42699074 42699104 -75163523 + AT_rich Low_complexity Low_complexity 1 30 0 2051 141 3 0 chr9 42699187 42699491 -75163136 + AluSq SINE Alu 1 305 -8 890 217 47 19 chr9 42700552 42700764 -75161863 - MLT1A2 LTR MaLR 0 374 157 5820 128 26 5 chr9 42701694 42703386 -75159241 - L1PA16 LINE L1 -16 6150 4441 1239 190 0 65 chr9 42704829 42704950 -75157677 - L1 LINE L1 -1693 4453 4326 2930 164 58 24 chr9 42704950 42705488 -75157139 - LTR38 LTR ERV1 0 556 1 1239 190 0 65 chr9 42705488 42705616 -75157011 - L1 LINE L1 -1820 4326 4225 2143 125 0 3 chr9 42705616 42705913 -75156714 + AluSx SINE Alu 1 296 -16 1239 190 0 65 chr9 42705913 42705972 -75156655 - L1 LINE L1 -1921 4225 4164 1084 53 8 8 chr9 42705993 42706124 -75156503 - AluY SINE Alu -180 131 1 1810 176 34 21 chr9 42706229 42706609 -75156018 + L1PB4 LINE L1 3544 3928 -2218 326 186 17 0 chr9 42706605 42706664 -75155963 + L1PB4 LINE L1 4894 4953 -1193 * 258 231 0 0 chr9 42706671 42706723 -75155904 + LTR30 LTR ERV1 1 52 -670 2038 166 86 10 chr9 42706747 42707153 -75155474 + LTR12 LTR ERV1 55 480 -234 4350 159 51 42 chr9 42707154 42707515 -75155112 + L1PB4 LINE L1 4957 5313 -843 1621 147 25 53 chr9 42707515 42707835 -75154792 + AluSx SINE Alu 1 311 -1 4350 159 51 42 chr9 42707835 42708643 -75153984 + L1PB4 LINE L1 5313 6156 0 2069 114 0 13 chr9 42709152 42709450 -75153177 + AluSx SINE Alu 1 294 -18 200 235 88 29 chr9 42710321 42710389 -75152238 - MIR SINE MIR -145 117 46 2073 113 23 0 chr9 42710687 42710988 -75151639 - AluSg SINE Alu -2 308 1 334 294 114 20 chr9 42711052 42711253 -75151374 + L1MC4a LINE L1 5694 5913 -1895 444 267 50 77 chr9 42711486 42711543 -75151084 + MER77 LTR ERV1 234 291 -314 1558 109 0 5 chr9 42711543 42711763 -75150864 - AluSq SINE Alu -12 301 83 444 267 50 77 chr9 42711763 42712041 -75150586 + MER77 LTR ERV1 291 598 -7 2409 70 3 0 chr9 42713232 42713530 -75149097 + AluY SINE Alu 1 299 -12 2365 65 0 36 chr9 42713552 42713859 -75148768 + AluY SINE Alu 1 296 -15 251 118 0 0 chr9 42714104 42714138 -75148489 - Alu SINE Alu -266 34 1 2288 107 3 0 chr9 42714188 42714496 -75148131 + AluSg SINE Alu 1 309 -1 1196 214 64 10 chr9 42714801 42715114 -75147513 - L1ME1 LINE L1 -15 6151 5822 21 0 0 0 chr9 42715294 42715315 -75147312 + AT_rich Low_complexity Low_complexity 1 21 0 258 221 287 16 chr9 42716005 42716127 -75146500 + MER5A DNA MER1_type 35 189 0 3383 131 39 0 chr9 42716769 42717302 -75145325 + MER41C LTR ERV1 1 554 0 1630 16 0 0 chr9 42717689 42717873 -75144754 - AluYb8 SINE Alu -2 316 133 2310 63 0 66 chr9 42717898 42718217 -75144410 - AluY SINE Alu -13 298 1 1071 245 71 58 chr9 42719458 42719854 -75142773 + MLT2B1 LTR ERVL 120 520 0 2543 231 71 11 chr9 42719877 42721041 -75141586 + ERVL-B1 LTR ERVL 4 1262 -4502 2157 158 13 10 chr9 42721042 42721440 -75141187 - Tigger5 DNA MER2_type -1 2322 1924 1232 120 48 10 chr9 42721440 42721648 -75140979 + L1PB1 LINE L1 5936 6151 0 1035 162 91 50 chr9 42721676 42721917 -75140710 - MER47B DNA MER2_type -167 251 1 1673 238 61 7 chr9 42721917 42722341 -75140286 + ERVL-B1 LTR ERVL 1261 1707 -4057 2244 137 71 2 chr9 42722345 42722740 -75139887 - MSTA LTR MaLR -6 422 1 5055 196 38 11 chr9 42722740 42723777 -75138850 + ERVL-B1 LTR ERVL 1701 2765 -2999 621 61 12 0 chr9 42723877 42723959 -75138668 - AluY SINE Alu -227 83 1 5118 215 7 21 chr9 42723961 42725313 -75137314 - L1 LINE L1 -1972 4174 2841 1181 293 28 30 chr9 42725555 42726026 -75136601 - L1PA13 LINE L1 -6317 470 1 9007 215 72 35 chr9 42726146 42726670 -75135957 + L1MB2 LINE L1 1297 1800 -4607 2124 103 0 48 chr9 42726670 42726980 -75135647 + AluY SINE Alu 1 295 -16 9007 215 72 35 chr9 42726980 42729411 -75133216 + L1MB2 LINE L1 1800 4139 -2268 369 0 0 0 chr9 42729411 42729452 -75133175 + (CA)n Simple_repeat Simple_repeat 2 42 0 9007 215 72 35 chr9 42729452 42730203 -75132424 + L1MB2 LINE L1 4139 4860 -1547 1507 140 70 28 chr9 42730203 42730488 -75132139 + AluJo SINE Alu 1 297 -15 9007 215 72 35 chr9 42730488 42730859 -75131768 + L1MB2 LINE L1 4860 5216 -1191 189 0 0 0 chr9 42730859 42730880 -75131747 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 9007 215 72 35 chr9 42730880 42731710 -75130917 + L1MB2 LINE L1 5216 6398 -9 800 168 24 0 chr9 42731709 42731876 -75130751 + L1MB8 LINE L1 5814 5984 -194 * 355 156 0 16 chr9 42731912 42731970 -75130657 - AluSg SINE Alu 0 302 245 1698 78 0 0 chr9 42731970 42732175 -75130452 - AluSg SINE Alu -105 205 1 602 200 7 7 chr9 42732181 42732321 -75130306 + L1MB8 LINE L1 6031 6170 -8 876 334 63 19 chr9 42732583 42733008 -75129619 + L2 LINE L2 2866 3309 -4 2264 52 42 7 chr9 42733051 42733337 -75129290 - AluY SINE Alu -13 298 3 208 333 125 10 chr9 42733379 42733475 -75129152 - L2 LINE L2 -21 3251 3145 2052 120 0 3 chr9 42733669 42733953 -75128674 + AluSq SINE Alu 1 283 -30 214 331 69 47 chr9 42733977 42734470 -75128157 - L2 LINE L2 -1345 1969 1466 * 237 291 68 48 chr9 42734452 42734555 -75128072 + L2 LINE L2 3168 3272 0 251 345 93 7 chr9 42734599 42734738 -75127889 - L2 LINE L2 -1985 1329 1179 22 0 0 0 chr9 42735195 42735217 -75127410 + AT_rich Low_complexity Low_complexity 1 22 0 183 336 154 55 chr9 42735303 42735687 -75126940 - L2 LINE L2 -2743 571 150 225 229 16 49 chr9 42736034 42736095 -75126532 + MIR SINE MIR 204 262 0 2528 62 0 0 chr9 42737042 42737351 -75125276 - AluY SINE Alu -2 309 1 2159 151 49 58 chr9 42738707 42738757 -75123870 - MSTB LTR MaLR 0 426 377 2496 46 0 13 chr9 42738757 42739064 -75123563 - AluY SINE Alu -8 303 1 2159 151 49 58 chr9 42739064 42739316 -75123311 - MSTB LTR MaLR -49 377 127 2451 52 0 7 chr9 42739316 42739621 -75123006 - AluY SINE Alu -8 303 1 2159 151 49 58 chr9 42739621 42739747 -75122880 - MSTB LTR MaLR -299 127 1 1459 174 25 0 chr9 42740019 42740261 -75122366 - AluJo SINE Alu -22 290 43 352 253 11 0 chr9 42740348 42740435 -75122192 - MLT1K LTR MaLR -170 418 331 572 181 125 0 chr9 42740852 42740996 -75121631 + MER3 DNA MER1_type 15 129 -80 223 316 13 13 chr9 42742457 42742533 -75120094 + MIR SINE MIR 40 115 -147 434 314 28 8 chr9 42743259 42743427 -75119200 + MIR SINE MIR 1 170 -42 652 142 24 110 chr9 42743432 42743483 -75119144 - MER6 DNA MER2_type -1 864 810 2362 53 0 47 chr9 42743483 42743802 -75118825 + AluY SINE Alu 1 304 -7 652 142 24 110 chr9 42743802 42743962 -75118665 - MER6 DNA MER2_type -55 810 -64 245 198 279 0 chr9 42744023 42744109 -75118518 + MIR SINE MIR 21 130 -132 411 202 0 0 chr9 42744122 42744211 -75118416 + (TG)n Simple_repeat Simple_repeat 2 90 0 970 244 47 60 chr9 42744219 42744649 -75117978 - MLT2B1 LTR ERVL -40 424 1 286 285 73 32 chr9 42744656 42744779 -75117848 + MIR SINE MIR 114 241 -21 1114 314 38 75 chr9 42745549 42747012 -75115615 + L1PA12 LINE L1 56 1464 -6117 240 203 0 0 chr9 42747020 42747079 -75115548 + L1PA12 LINE L1 2022 2080 -5501 3382 182 42 4 chr9 42747084 42747783 -75114844 + L1P LINE L1 3624 4348 -1798 8601 86 4 8 chr9 42747788 42748993 -75113634 - L1P3 LINE L1 -5261 1200 1 4459 42 2 7 chr9 42749232 42749785 -75112842 - L1PA4 LINE L1 0 6155 5606 202 345 99 63 chr9 42749819 42750071 -75112556 - L2 LINE L2 -504 2810 2550 279 343 52 41 chr9 42750538 42750710 -75111917 - L2 LINE L2 -942 2372 2199 886 169 17 0 chr9 42752297 42752475 -75110152 + L1MC3 LINE L1 6858 7038 -747 269 250 21 0 chr9 42752631 42752727 -75109900 + L1 LINE L1 3905 4002 -2144 1085 213 161 2 chr9 42752728 42753131 -75109496 + L1 LINE L1 4631 5097 -1049 * 1088 198 39 47 chr9 42753122 42753544 -75109083 - L1M4 LINE L1 -3660 2722 2295 539 283 26 43 chr9 42753543 42753773 -75108854 + L1ME1 LINE L1 5907 6132 -34 * 384 175 62 72 chr9 42753787 42753884 -75108743 + MER21B LTR ERV1 1 96 -767 422 208 0 0 chr9 42753890 42753967 -75108660 + MER21B LTR ERV1 18 94 -769 * 1660 223 33 8 chr9 42753965 42754332 -75108295 + MER21B LTR ERV1 43 418 -445 1304 68 0 109 chr9 42754333 42754554 -75108073 + MER107 DNA MER1_type 1 197 0 * 2024 195 27 20 chr9 42754554 42754991 -75107636 + MER21B LTR ERV1 421 860 -3 24 0 0 0 chr9 42754998 42755022 -75107605 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr9 42755171 42755199 -75107428 + AT_rich Low_complexity Low_complexity 1 28 0 411 162 66 7 chr9 42756333 42756445 -75106182 + L1 LINE L1 5224 5347 -809 4041 152 20 0 chr9 42756445 42757128 -75105499 + L1PA16 LINE L1 5452 6151 -15 411 162 66 7 chr9 42757128 42757151 -75105476 + L1 LINE L1 5347 5367 -789 1659 155 182 19 chr9 42757644 42758012 -75104615 + MSTA LTR MaLR 1 428 0 250 291 127 0 chr9 42758058 42758137 -75104490 - L2 LINE L2 -43 3270 3182 374 314 44 6 chr9 42759933 42760092 -75102535 + MIR3 SINE MIR 33 197 -11 590 273 77 16 chr9 42761169 42761363 -75101264 - MIR SINE MIR -20 242 37 264 295 80 45 chr9 42762240 42762352 -75100275 + L2 LINE L2 3155 3270 -2 2260 24 0 0 chr9 42763800 42764052 -75098575 + AluYa8 SINE Alu 51 302 -8 632 287 275 33 chr9 42764672 42765116 -75097511 + MLT1F1 LTR MaLR 3 595 0 2805 10 0 0 chr9 42765532 42765840 -75096787 + AluYa5 SINE Alu 1 308 -3 1872 158 16 10 chr9 42765984 42766287 -75096340 - AluSx SINE Alu -7 305 1 609 206 23 0 chr9 42766760 42766891 -75095736 + MER5B DNA MER1_type 44 177 -1 753 277 44 21 chr9 42768789 42769129 -75093498 + MLT1F1 LTR MaLR 3 351 -179 434 217 61 17 chr9 42769117 42769232 -75093395 + MLT1F1 LTR MaLR 476 595 0 * 1878 162 3 10 chr9 42769782 42770084 -75092543 - AluSx SINE Alu -12 300 1 587 214 23 0 chr9 42770561 42770692 -75091935 + MER5B DNA MER1_type 44 177 -1 2280 79 3 23 chr9 42771681 42771985 -75090642 + AluSx SINE Alu 3 300 -12 10152 172 29 4 chr9 42772785 42775588 -75087039 + ERVL-B1 LTR ERVL 2823 5757 -7 1811 251 13 57 chr9 42775589 42776132 -75086495 + MLT2B1 LTR ERVL 2 520 0 2242 103 6 6 chr9 42776345 42776656 -75085971 - AluSp SINE Alu -2 311 1 219 315 14 0 chr9 42776736 42776809 -75085818 + CT-rich Low_complexity Low_complexity 1 74 0 907 256 124 25 chr9 42777196 42777598 -75085029 + LTR16A1 LTR ERVL 16 457 0 1971 141 0 32 chr9 42777829 42778141 -75084486 - AluSx SINE Alu -10 302 1 201 254 143 32 chr9 42778178 42778304 -75084323 + L2 LINE L2 3174 3313 0 1034 235 24 62 chr9 42780231 42780520 -75082107 - MER70A LTR ERVL -191 281 4 722 265 52 26 chr9 42780526 42780756 -75081871 - L2 LINE L2 -687 2627 2392 1296 7 0 0 chr9 42780860 42780996 -75081631 + AluY SINE Alu 1 136 -175 2260 76 13 3 chr9 42781159 42781462 -75081165 + AluY SINE Alu 1 306 -5 21 0 0 0 chr9 42781621 42781642 -75080985 + AT_rich Low_complexity Low_complexity 1 21 0 984 22 30 8 chr9 42781992 42782126 -75080501 + (TTATA)n Simple_repeat Simple_repeat 4 140 0 2307 68 0 14 chr9 42782126 42782411 -75080216 - AluY SINE Alu -28 283 1 314 223 64 11 chr9 42782838 42782932 -75079695 + LTR41 LTR ERVL 3 101 -672 2905 143 52 29 chr9 42783267 42783854 -75078773 - LTR49 LTR ERV1 0 549 1 396 264 119 25 chr9 42784035 42784270 -75078357 - LTR41 LTR ERVL -6 767 511 476 327 76 19 chr9 42834824 42835035 -75027592 + MIR SINE MIR 15 237 -25 608 302 34 15 chr9 42835068 42835273 -75027354 + MLT1K LTR MaLR 373 581 -7 374 367 28 17 chr9 42835284 42835461 -75027166 - MER5A DNA MER1_type -10 179 1 871 183 11 5 chr9 42835621 42835807 -75026820 - L1MA6 LINE L1 -2 6298 6112 1976 91 34 20 chr9 42836718 42837014 -75025613 - AluY SINE Alu -11 300 1 206 255 0 0 chr9 42838605 42838656 -75023971 + T-rich Low_complexity Low_complexity 1 51 0 2118 142 72 4 chr9 42839909 42840516 -75022111 - MER50 LTR ERV1 -23 711 12 372 271 21 42 chr9 42840609 42840753 -75021874 + HERVS71 LTR ERV1 4927 5067 -3911 3796 154 39 22 chr9 42840763 42841478 -75021149 - LTR8A LTR ERV1 0 727 1 29 0 0 0 chr9 42843233 42843262 -75019365 + AT_rich Low_complexity Low_complexity 1 29 0 2140 114 0 32 chr9 42843512 42843820 -75018807 - AluSx SINE Alu -14 298 1 269 322 89 0 chr9 42843850 42843940 -75018687 - MIR SINE MIR -81 127 30 273 336 49 7 chr9 42844416 42844559 -75018068 - MIR SINE MIR -92 170 22 252 260 48 68 chr9 42845398 42845544 -75017083 - MIR SINE MIR -78 184 42 198 297 14 54 chr9 42845699 42845773 -75016854 + MIR SINE MIR 175 245 -17 202 318 220 8 chr9 42846421 42846553 -75016074 - MIR SINE MIR -50 212 53 24 32 0 0 chr9 42847090 42847121 -75015506 + AT_rich Low_complexity Low_complexity 1 31 0 1995 160 0 3 chr9 42847961 42848268 -75014359 + AluSx SINE Alu 1 306 -6 2401 73 0 3 chr9 42848481 42848781 -75013846 - AluY SINE Alu -6 305 7 308 280 28 9 chr9 42849268 42849375 -75013252 + MIR3 SINE MIR 100 208 0 181 367 0 0 chr9 42850165 42850214 -75012413 + L2 LINE L2 3245 3293 -20 183 100 0 0 chr9 42851641 42851671 -75010956 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 1483 164 74 0 chr9 42851672 42851941 -75010686 - 7SLRNA srpRNA srpRNA -8 312 24 218 368 28 9 chr9 42852543 42852649 -75009978 + L2 LINE L2 2601 2708 -606 648 348 112 16 chr9 42852806 42853612 -75009015 + L2 LINE L2 2427 3313 0 362 169 28 0 chr9 42854865 42854936 -75007691 - MER116 DNA Mariner -3 77 5 729 275 86 19 chr9 42855434 42855900 -75006727 - L1MEc LINE L1 -3657 2558 2104 703 297 44 53 chr9 42856170 42856893 -75005734 - L1MEc LINE L1 -4658 1738 1022 33 46 0 15 chr9 42857779 42857817 -75004810 + AT_rich Low_complexity Low_complexity 1 39 -25 1746 158 42 3 chr9 42857817 42858102 -75004525 + AluJb SINE Alu 1 296 -16 33 46 0 15 chr9 42858102 42858128 -75004499 + AT_rich Low_complexity Low_complexity 39 64 0 204 259 0 37 chr9 42858248 42858302 -75004325 + GA-rich Low_complexity Low_complexity 5 56 0 238 176 88 29 chr9 42858451 42858519 -75004108 + L1M4 LINE L1 4519 4590 -1556 2720 206 73 30 chr9 42858552 42859288 -75003339 + L1ME1 LINE L1 5396 6163 -3 1882 141 21 7 chr9 42859321 42859612 -75003015 - AluSx SINE Alu -12 300 6 276 315 118 8 chr9 42859690 42859817 -75002810 - MER5A DNA MER1_type -6 183 43 1767 168 3 10 chr9 42860108 42860406 -75002221 + AluJo SINE Alu 1 296 -16 189 227 23 0 chr9 42860681 42860725 -75001902 + L2 LINE L2 3226 3270 -2 618 264 111 32 chr9 42861208 42861424 -75001203 - MIR SINE MIR 0 262 30 1284 180 141 0 chr9 42861873 42862128 -75000499 - AluJb SINE Alu -11 291 1 23 0 0 0 chr9 42863340 42863363 -74999264 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr9 42863447 42863475 -74999152 + AT_rich Low_complexity Low_complexity 1 28 0 1893 155 111 17 chr9 42863675 42863714 -74998913 - MLT2D LTR ERVL -2 412 378 369 75 0 0 chr9 42863714 42863767 -74998860 + (TG)n Simple_repeat Simple_repeat 2 54 0 1893 155 111 17 chr9 42863767 42864089 -74998538 - MLT2D LTR ERVL -36 378 17 328 333 0 0 chr9 42864981 42865083 -74997544 + MER94 DNA DNA 1 102 -32 436 224 68 41 chr9 42866534 42866681 -74995946 + MER58A DNA MER1_type 45 195 -29 2331 104 0 0 chr9 42867230 42867537 -74995090 - AluSq SINE Alu -6 307 1 2258 87 14 0 chr9 42867539 42867826 -74994801 - AluY SINE Alu -1 310 20 2109 137 16 0 chr9 42867829 42868136 -74994491 - AluSx SINE Alu 0 312 1 598 231 100 6 chr9 42870023 42870183 -74992444 - MER5B DNA MER1_type -2 176 2 415 324 112 22 chr9 42870362 42870819 -74991808 + L1M4 LINE L1 4658 5155 -991 562 159 38 8 chr9 42870896 42871028 -74991599 - LTR37B LTR ERV1 0 468 333 285 273 13 0 chr9 42871080 42871157 -74991470 + L2 LINE L2 3186 3263 -9 236 291 55 36 chr9 42872187 42872297 -74990330 + MIR SINE MIR 32 143 -119 529 178 212 42 chr9 42872981 42873072 -74989555 - LTR37A LTR ERV1 -13 413 339 2231 185 144 22 chr9 42873072 42873574 -74989053 - MER67C LTR ERV1 0 710 114 216 0 0 0 chr9 42873574 42873598 -74989029 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2231 185 144 22 chr9 42873598 42873728 -74988899 - MER67C LTR ERV1 -596 114 1 529 178 212 42 chr9 42873728 42873895 -74988732 - LTR37A LTR ERV1 -87 339 111 706 171 190 96 chr9 42874462 42874749 -74987878 - LTR37A LTR ERV1 0 426 95 2491 71 0 7 chr9 42874749 42875059 -74987568 + AluY SINE Alu 1 308 -3 706 171 190 96 chr9 42875059 42875145 -74987482 - LTR37A LTR ERV1 -331 95 18 1956 141 3 3 chr9 42875810 42876118 -74986509 - AluSx SINE Alu 0 309 2 23 33 0 0 chr9 42876141 42876171 -74986456 + AT_rich Low_complexity Low_complexity 1 30 0 883 215 127 4 chr9 42876182 42876442 -74986185 - LTR37A LTR ERV1 -57 369 78 1278 179 87 33 chr9 42877780 42878115 -74984512 + MLT1A1 LTR MaLR 11 363 -2 662 248 109 42 chr9 42878799 42879139 -74983488 + MER93b LTR ERV1 35 370 -3 2368 83 0 6 chr9 42879217 42879530 -74983097 - AluY SINE Alu 0 311 1 6872 180 16 20 chr9 42880087 42881215 -74981412 - L1PA15 LINE L1 -1 6164 5021 1520 160 82 25 chr9 42881215 42881376 -74981251 - AluJo SINE Alu -14 298 113 375 23 0 0 chr9 42881376 42881420 -74981207 + (TTA)n Simple_repeat Simple_repeat 2 45 0 1520 160 82 25 chr9 42881420 42881539 -74981088 - AluJo SINE Alu -199 113 2 6872 180 16 20 chr9 42881539 42882625 -74980002 - L1PA15 LINE L1 -1144 5021 3933 1553 216 136 34 chr9 42882715 42883274 -74979353 + MLT1E2 LTR MaLR 11 626 0 198 0 0 0 chr9 42883341 42883363 -74979264 + (A)n Simple_repeat Simple_repeat 1 22 0 1292 117 0 44 chr9 42883431 42883636 -74978991 + AluSq SINE Alu 9 204 -109 240 143 57 0 chr9 42883645 42883715 -74978912 + (TA)n Simple_repeat Simple_repeat 2 75 0 867 191 95 19 chr9 42884023 42884233 -74978394 + MLT1B LTR MaLR 1 226 -164 934 171 14 28 chr9 42884402 42884619 -74978008 - L1MA9 LINE L1 -25 6287 6074 2277 79 0 30 chr9 42885416 42885720 -74976907 + AluY SINE Alu 1 295 -16 1490 163 47 60 chr9 42886407 42886707 -74975920 - AluJb SINE Alu -16 296 1 2041 141 10 0 chr9 42889198 42889503 -74973124 + AluSx SINE Alu 1 308 -4 2099 110 0 32 chr9 42890099 42890407 -74972220 + AluY SINE Alu 1 298 -13 23 78 0 0 chr9 42891290 42891341 -74971286 + AT_rich Low_complexity Low_complexity 1 51 0 2460 68 0 10 chr9 42891497 42891807 -74970820 - AluY SINE Alu -4 307 1 454 184 184 0 chr9 42891811 42891925 -74970702 + MER58C DNA MER1_type 81 215 0 441 268 54 0 chr9 42894133 42894245 -74968382 - MER8 DNA MER2_type -121 118 1 22 0 0 0 chr9 42894941 42894963 -74967664 + AT_rich Low_complexity Low_complexity 1 22 0 2239 114 0 0 chr9 42895558 42895855 -74966772 - AluSg SINE Alu -12 298 2 2470 68 3 7 chr9 42895888 42896198 -74966429 + AluY SINE Alu 1 309 -2 490 88 11 11 chr9 42896758 42896849 -74965778 + (GA)n Simple_repeat Simple_repeat 2 92 0 184 267 100 0 chr9 42897743 42897803 -74964824 + MIR SINE MIR 178 243 -19 1414 207 99 14 chr9 42898699 42899052 -74963575 - MLT1B LTR MaLR -4 386 4 268 119 45 0 chr9 42900151 42900218 -74962409 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 281 346 33 25 chr9 42900477 42900773 -74961854 + L2 LINE L2 2791 3090 -223 213 214 0 0 chr9 42900873 42900915 -74961712 + L2 LINE L2 3241 3282 -31 196 239 104 0 chr9 42901227 42901294 -74961333 - MIR SINE MIR -83 179 106 204 338 14 14 chr9 42901351 42901425 -74961202 - MIR SINE MIR -105 103 30 454 204 259 27 chr9 42901449 42901634 -74960993 + MIR SINE MIR 40 262 0 1348 199 10 70 chr9 42901653 42901891 -74960736 - AluJo SINE Alu -15 297 79 1723 104 0 0 chr9 42901891 42902121 -74960506 + AluSg/x SINE Alu 72 301 -9 1348 199 10 70 chr9 42902121 42902183 -74960444 - AluJo SINE Alu -233 79 15 35755 62 10 6 chr9 42902457 42903230 -74959397 + L1PA5 LINE L1 405 1174 -4980 318 23 0 0 chr9 42903230 42903274 -74959353 + L1PA2 LINE L1 6110 6153 -2 35755 62 10 6 chr9 42903274 42908224 -74954403 + L1PA5 LINE L1 1174 6148 -6 1494 192 45 24 chr9 42908412 42908745 -74953882 - MER2 DNA MER2_type -4 340 1 2285 104 13 0 chr9 42909139 42909447 -74953180 - AluSq SINE Alu -1 312 1 2778 182 10 11 chr9 42909809 42910330 -74952297 + MER44D DNA MER2_type 1 575 -30 436 134 268 0 chr9 42911255 42911367 -74951260 - L1MB1 LINE L1 -19 6170 6029 1445 181 16 23 chr9 42911374 42911678 -74950949 + L1M3 LINE L1 5484 5785 -383 26 0 0 0 chr9 42913428 42913454 -74949173 + AT_rich Low_complexity Low_complexity 1 26 0 433 165 31 16 chr9 42913549 42913676 -74948951 + CT-rich Low_complexity Low_complexity 4 132 0 295 129 0 57 chr9 42914390 42914460 -74948167 + (GGGAA)n Simple_repeat Simple_repeat 3 68 0 349 284 29 10 chr9 42915570 42915672 -74946955 - MER5B DNA MER1_type 0 178 75 1788 173 13 7 chr9 42915806 42916107 -74946520 - AluJb SINE Alu -6 306 4 655 288 29 0 chr9 42916626 42916796 -74945831 - MIR SINE MIR -74 188 14 256 159 16 16 chr9 42917079 42917142 -74945485 + GA-rich Low_complexity Low_complexity 2 64 0 3968 119 34 0 chr9 42918613 42919227 -74943400 - MER41B LTR ERV1 0 635 1 302 224 26 0 chr9 42920339 42920415 -74942212 - MER116 DNA Mariner 0 80 3 327 49 0 0 chr9 42921263 42921304 -74941323 + (TA)n Simple_repeat Simple_repeat 1 41 0 273 288 153 13 chr9 42921337 42921573 -74941054 - L1MC/D LINE L1 -1919 5889 5621 708 296 57 6 chr9 42921797 42922028 -74940599 + MIR SINE MIR 5 244 -18 316 233 22 11 chr9 42922221 42922311 -74940316 - L1MC/D LINE L1 -2312 5473 5383 2314 69 0 0 chr9 42922316 42922622 -74940005 - AluY SINE Alu 0 311 6 299 281 65 43 chr9 42922911 42923050 -74939577 - L1P LINE L1 -1101 5045 4904 2142 117 0 13 chr9 42923182 42923482 -74939145 - AluSx SINE Alu -16 296 1 14120 182 33 36 chr9 42923568 42925583 -74937044 - L1MA8 LINE L1 -2 7708 5689 1617 176 32 7 chr9 42925583 42925867 -74936760 - AluJb SINE Alu -21 291 1 14120 182 33 36 chr9 42925867 42927281 -74935346 - L1MA8 LINE L1 -2021 5689 4272 2120 116 20 0 chr9 42927281 42927582 -74935045 - AluSc SINE Alu -2 307 1 14120 182 33 36 chr9 42927582 42928017 -74934610 - L1MA8 LINE L1 -3438 4272 3837 2293 90 0 13 chr9 42928017 42928316 -74934311 - AluSg SINE Alu -15 295 1 14120 182 33 36 chr9 42928316 42929582 -74933045 - L1MA8 LINE L1 -3873 3837 2598 287 169 14 0 chr9 42929598 42929669 -74932958 + CT-rich Low_complexity Low_complexity 3 74 0 676 257 0 0 chr9 42929720 42929856 -74932771 - FRAM SINE Alu -40 136 1 782 229 83 9 chr9 42929857 42930193 -74932434 - L1M3c LINE L1 -4572 2465 2105 754 170 115 6 chr9 42930209 42930374 -74932253 - MSTD LTR MaLR -59 337 155 245 114 0 0 chr9 42930372 42930407 -74932220 - MSTD LTR MaLR -361 35 1 * 5534 143 19 6 chr9 42930428 42931899 -74930728 - L1PA16 LINE L1 -5 6161 4675 346 237 108 0 chr9 42931927 42932020 -74930607 - L1M3c LINE L1 -6922 108 6 229 263 0 0 chr9 42932096 42932153 -74930474 - L1M4 LINE L1 -1569 4577 4521 2203 90 35 7 chr9 42932394 42932684 -74929943 - AluSq SINE Alu -9 304 7 24 0 0 0 chr9 42933218 42933242 -74929385 + AT_rich Low_complexity Low_complexity 1 24 0 277 308 192 0 chr9 42933423 42933579 -74929048 - MIR SINE MIR -1 261 76 186 343 60 0 chr9 42934927 42934994 -74927633 - MIR SINE MIR -121 141 71 837 120 20 7 chr9 42935283 42935433 -74927194 - L1MB3 LINE L1 -3 6180 6029 235 180 20 0 chr9 42935711 42935761 -74926866 + (TA)n Simple_repeat Simple_repeat 2 52 0 201 74 0 0 chr9 42935785 42935812 -74926815 + (TG)n Simple_repeat Simple_repeat 2 28 0 27 0 0 0 chr9 42935812 42935839 -74926788 + AT_rich Low_complexity Low_complexity 1 27 0 204 324 127 0 chr9 42937255 42937401 -74925226 - L2 LINE L2 -264 3049 2885 519 291 53 93 chr9 42937587 42937962 -74924665 - L2 LINE L2 -658 2656 2297 708 268 113 26 chr9 42938767 42939077 -74923550 - MER46C DNA MER2_type 0 338 2 2157 100 25 0 chr9 42939823 42940144 -74922483 + L1MA2 LINE L1 5976 6304 0 197 274 48 0 chr9 42940802 42940864 -74921763 - L2 LINE L2 -2 3270 3206 1359 210 107 62 chr9 42940870 42941308 -74921319 - MLT1C LTR MaLR -4 463 6 871 102 0 8 chr9 42941806 42941977 -74920650 - AluSp/q SINE Alu 0 336 167 2089 130 0 34 chr9 42942117 42942440 -74920187 + AluSx SINE Alu 1 312 0 23 54 0 0 chr9 42942659 42942696 -74919931 + AT_rich Low_complexity Low_complexity 1 37 0 465 218 73 0 chr9 42943530 42943640 -74918987 + L1MA8 LINE L1 5914 6031 -260 203 136 23 23 chr9 42944540 42944584 -74918043 + (TA)n Simple_repeat Simple_repeat 1 44 0 204 336 33 33 chr9 42945170 42945292 -74917335 + L3 LINE CR1 597 718 -859 2059 119 0 0 chr9 42945596 42945911 -74916716 - AluSc SINE Alu 0 315 1 206 136 23 0 chr9 42948050 42948094 -74914533 + (CAT)n Simple_repeat Simple_repeat 2 46 0 2270 275 39 7 chr9 42948873 42949763 -74912864 + L1MEc LINE L1 2172 3051 -3164 584 214 40 0 chr9 42951242 42951368 -74911259 - L1MD2 LINE L1 -19 6340 6210 266 265 179 26 chr9 42951406 42951523 -74911104 - L1ME1 LINE L1 -90 6076 5942 * 503 206 96 14 chr9 42951521 42951667 -74910960 - L1MDa LINE L1 -6363 177 20 1015 179 17 125 chr9 42951971 42952085 -74910542 - L1ME1 LINE L1 -334 5832 5707 2105 141 36 28 chr9 42952085 42952446 -74910181 - THE1B LTR MaLR 0 364 1 1015 179 17 125 chr9 42952446 42952525 -74910102 - L1ME1 LINE L1 -459 5707 5621 1880 139 10 23 chr9 42952525 42952827 -74909800 - AluSx SINE Alu -14 298 1 1015 179 17 125 chr9 42952827 42952983 -74909644 - L1ME1 LINE L1 -545 5621 5520 1088 214 41 22 chr9 42953013 42953331 -74909296 - L1ME1 LINE L1 -1610 4536 4213 1248 284 11 11 chr9 42953349 42953708 -74908919 + LTR40c LTR ERVL 5 363 -102 297 228 87 11 chr9 42953711 42953803 -74908824 - L1ME LINE L1 -676 5490 5392 * 1093 252 143 49 chr9 42953801 42954412 -74908215 + L1ME2 LINE L1 5488 6163 -1 1183 146 0 6 chr9 42955014 42955192 -74907435 + AluSq SINE Alu 3 179 -134 251 286 43 0 chr9 42955213 42955283 -74907344 + GA-rich Low_complexity Low_complexity 6 78 0 180 0 0 0 chr9 42955284 42955304 -74907323 + (GGGGA)n Simple_repeat Simple_repeat 2 21 0 353 296 0 22 chr9 42956661 42956840 -74905787 + (TA)n Simple_repeat Simple_repeat 2 176 0 241 174 0 0 chr9 42956869 42956915 -74905712 - LTR66 LTR ERVL -171 439 394 204 40 0 0 chr9 42956952 42956977 -74905650 + (CA)n Simple_repeat Simple_repeat 2 26 0 300 253 58 0 chr9 42957065 42957152 -74905475 - L1MC4 LINE L1 -1337 6705 6614 707 120 0 0 chr9 42958100 42958208 -74904419 - L1MA2 LINE L1 0 6304 6197 207 0 0 0 chr9 42958296 42958319 -74904308 + (CAT)n Simple_repeat Simple_repeat 2 24 0 2140 68 21 21 chr9 42959169 42959484 -74903143 + AluSg SINE Alu 2 316 0 1881 147 55 0 chr9 42959556 42959902 -74902725 - L1MB3 LINE L1 -1 6182 5818 341 229 24 0 chr9 42959914 42959997 -74902630 - L1MB3 LINE L1 -411 5772 5688 674 213 20 87 chr9 42960004 42960199 -74902428 - MIR SINE MIR -48 214 31 349 219 21 31 chr9 42960373 42960469 -74902158 + MER58C DNA MER1_type 24 118 -97 1676 204 0 7 chr9 42960478 42960786 -74901841 + AluJo SINE Alu 1 306 -6 317 214 0 12 chr9 42960793 42960877 -74901750 + GA-rich Low_complexity Low_complexity 3 85 0 406 240 39 0 chr9 42960881 42960985 -74901642 + MER58C DNA MER1_type 106 213 -2 2367 164 24 19 chr9 42960995 42961463 -74901164 - L1MA7 LINE L1 0 6291 5822 872 91 15 23 chr9 42963029 42963161 -74899466 - FLAM_C SINE Alu -2 131 1 2397 63 0 60 chr9 42964401 42964732 -74897895 + AluY SINE Alu 1 311 0 21 0 0 0 chr9 42965942 42965963 -74896664 + AT_rich Low_complexity Low_complexity 1 21 0 1819 117 53 0 chr9 42967910 42968176 -74894451 + AluSc SINE Alu 1 322 0 379 0 0 0 chr9 42968176 42968218 -74894409 + (TAAA)n Simple_repeat Simple_repeat 4 76 0 21 0 0 0 chr9 42969536 42969557 -74893070 + AT_rich Low_complexity Low_complexity 1 21 0 2048 108 0 57 chr9 42969557 42969873 -74892754 + AluY SINE Alu 1 298 -13 543 193 0 93 chr9 42971003 42971164 -74891463 - L1ME1 LINE L1 -8 6158 6013 241 381 68 7 chr9 42973225 42973372 -74889255 + L2 LINE L2 3109 3264 -8 2152 126 0 0 chr9 42973817 42974119 -74888508 + AluY SINE Alu 4 305 -6 283 353 172 0 chr9 42975217 42975339 -74887288 - L2 LINE L2 -3 3269 3127 627 268 50 42 chr9 42975818 42976271 -74886356 + MLT1D LTR MaLR 7 505 0 192 77 0 0 chr9 42976649 42976675 -74885952 + (A)n Simple_repeat Simple_repeat 1 26 0 267 281 28 28 chr9 42977149 42977327 -74885300 + MLT1K LTR MaLR 88 265 -323 576 252 48 0 chr9 42977382 42977529 -74885098 - L2 LINE L2 0 3313 3160 312 312 208 9 chr9 42977584 42977805 -74884822 + MLT1K LTR MaLR 309 573 -15 187 350 21 57 chr9 42978079 42978273 -74884354 + L2 LINE L2 2738 2924 -390 1101 70 6 38 chr9 42979017 42979175 -74883452 - AluYb8 SINE Alu -165 153 1 1711 85 15 0 chr9 42979807 42980067 -74882560 + L1MA1 LINE L1 6039 6302 0 26 0 0 0 chr9 42980069 42980095 -74882532 + AT_rich Low_complexity Low_complexity 1 26 0 1773 139 0 0 chr9 42980938 42981190 -74881437 + AluSg SINE Alu 45 296 -14 611 85 0 0 chr9 42981378 42981460 -74881167 + L1PA4 LINE L1 7 88 -6058 31830 51 37 34 chr9 42981460 42986980 -74875647 + L1PA4 LINE L1 617 6152 -3 254 331 108 16 chr9 42987094 42987345 -74875282 + LTR16C LTR ERVL 169 442 -49 1305 175 59 20 chr9 42987817 42988120 -74874507 - LTR40b LTR ERVL 0 462 148 24 0 0 0 chr9 42988553 42988577 -74874050 + AT_rich Low_complexity Low_complexity 1 24 0 629 253 146 0 chr9 42991056 42991289 -74871338 - L1MC4 LINE L1 -180 7862 7596 610 103 0 0 chr9 42991669 42991756 -74870871 - AluSg/x SINE Alu -10 300 214 1143 111 6 12 chr9 42991756 42991918 -74870709 - AluSq SINE Alu -152 161 1 2409 70 0 23 chr9 42992568 42992870 -74869757 - AluSq SINE Alu -18 295 1 22 0 0 0 chr9 42994252 42994274 -74868353 + GC_rich Low_complexity Low_complexity 1 22 0 309 210 153 51 chr9 42994736 42994893 -74867734 - MER96B DNA MER1_type? -244 173 1 2104 85 24 3 chr9 42995582 42995875 -74866752 + AluSc SINE Alu 1 299 -10 21 36 0 0 chr9 42996668 42996696 -74865931 + AT_rich Low_complexity Low_complexity 1 28 0 1970 141 0 16 chr9 42997055 42997360 -74865267 - AluSx SINE Alu -12 300 1 27 29 0 0 chr9 42998622 42998656 -74863971 + AT_rich Low_complexity Low_complexity 1 34 0 2320 110 0 3 chr9 42998958 42999268 -74863359 + AluY SINE Alu 1 309 -2 26 50 0 0 chr9 43000716 43000756 -74861871 + AT_rich Low_complexity Low_complexity 1 40 0 1301 99 10 20 chr9 43001173 43001347 -74861280 - AluY SINE Alu -7 304 131 383 0 21 0 chr9 43001347 43001394 -74861233 + (TG)n Simple_repeat Simple_repeat 2 49 0 1301 99 10 20 chr9 43001394 43001420 -74861207 - AluY SINE Alu -180 131 106 262 0 0 0 chr9 43001422 43001458 -74861169 - AluY SINE Alu -130 171 136 441 0 0 0 chr9 43001458 43001507 -74861120 + (TG)n Simple_repeat Simple_repeat 2 50 0 2324 69 10 0 chr9 43001508 43001799 -74860828 - AluY SINE Alu -17 294 1 2081 130 7 0 chr9 43002025 43002324 -74860303 + AluSx SINE Alu 1 301 -11 3654 117 71 23 chr9 43002335 43002562 -74860065 + L1PA15 LINE L1 5522 5737 -428 2274 88 0 0 chr9 43002562 43002867 -74859760 + AluY SINE Alu 1 305 -6 3654 117 71 23 chr9 43002867 43003247 -74859380 + L1PA15 LINE L1 5737 6158 -7 334 317 148 0 chr9 43003331 43003473 -74859154 + MIR SINE MIR 74 236 -26 2021 258 64 27 chr9 43003588 43004645 -74857982 + L1MEc LINE L1 1562 2617 -3598 2283 103 0 3 chr9 43004645 43004947 -74857680 - AluSq SINE Alu -12 301 1 2021 258 64 27 chr9 43004947 43005179 -74857448 + L1MEc LINE L1 2617 2839 -3376 1741 231 26 30 chr9 43005970 43006500 -74856127 + L1M4c LINE L1 794 1323 -5061 2942 141 103 6 chr9 43006500 43007005 -74855622 + MER41C LTR ERV1 1 554 0 1741 231 26 30 chr9 43007005 43007084 -74855543 + L1M4c LINE L1 1323 1401 -4983 266 266 0 0 chr9 43007105 43007169 -74855458 + L1M4c LINE L1 1595 1658 -4726 * 4913 208 67 48 chr9 43007165 43007404 -74855223 + L1MC2 LINE L1 17 250 -6176 2161 128 10 0 chr9 43007404 43007709 -74854918 + AluSq SINE Alu 1 308 -5 4913 208 67 48 chr9 43007709 43010002 -74852625 + L1MC2 LINE L1 250 2575 -3851 1148 194 35 10 chr9 43010197 43010485 -74852142 + LTR43 LTR ERV1 176 470 -132 5211 235 47 81 chr9 43010567 43013104 -74849523 + L1MC2 LINE L1 2564 5014 -1412 1757 189 53 7 chr9 43013103 43013521 -74849106 + L1MC2 LINE L1 6187 6623 -1 * 1228 260 36 4 chr9 43013526 43014003 -74848624 + L1M4c LINE L1 2398 2889 -3493 452 266 18 50 chr9 43014007 43014183 -74848444 + L1M3 LINE L1 1491 1660 -4724 2477 70 0 0 chr9 43014183 43014482 -74848145 + AluY SINE Alu 1 299 -12 452 266 18 50 chr9 43014482 43014523 -74848104 + L1M3 LINE L1 1660 1701 -4683 4775 84 9 0 chr9 43014947 43015713 -74846914 + L1P3 LINE L1 4692 5461 -693 2421 45 7 7 chr9 43015736 43016044 -74846583 - AluY SINE Alu -3 308 1 903 116 177 22 chr9 43016044 43016225 -74846402 + THE1B LTR MaLR 156 364 0 295 288 8 23 chr9 43016227 43016359 -74846268 + L1M3 LINE L1 2616 2745 -3637 887 275 6 38 chr9 43116384 43116730 -74745897 + L1M4c LINE L1 3750 4084 -2298 8747 109 30 9 chr9 43116738 43122758 -74739869 - L1PA6 LINE L1 0 6154 11 1286 290 71 67 chr9 43122769 43122964 -74739663 + L1M4c LINE L1 4077 4270 -2112 1798 174 0 0 chr9 43122964 43123262 -74739365 + AluSx SINE Alu 15 312 0 1286 290 71 67 chr9 43123262 43124018 -74738609 + L1M4c LINE L1 4270 5007 -1375 1245 221 16 35 chr9 43124018 43124335 -74738292 + AluJb SINE Alu 1 311 -1 1286 290 71 67 chr9 43124335 43124563 -74738064 + L1M4c LINE L1 5007 5233 -1149 30 59 0 0 chr9 43125051 43125102 -74737525 + AT_rich Low_complexity Low_complexity 1 51 0 3699 226 40 38 chr9 43125807 43125889 -74736738 - L1PA16 LINE L1 -90 6076 5996 1949 124 3 0 chr9 43125889 43126198 -74736429 - AluSx SINE Alu 0 310 1 3699 226 40 38 chr9 43126198 43127640 -74734987 - L1PA16 LINE L1 -170 5996 4550 599 180 134 47 chr9 43128432 43128604 -74734023 + L1MA9 LINE L1 6126 6312 0 * 7872 246 55 22 chr9 43128590 43131611 -74731016 + L1M3 LINE L1 2719 5846 -570 3282 154 27 5 chr9 43132461 43133096 -74729531 + TAR1 Satellite telomeric 1420 2068 -43 422 99 6 88 chr9 43133240 43133411 -74729216 + (TTAGGG)n Simple_repeat Simple_repeat 5 161 0 10267 218 13 25 chr9 43133523 43136520 -74726107 - L1 LINE L1 -1699 4447 1497 22 56 0 0 chr9 43137615 43137651 -74724976 + AT_rich Low_complexity Low_complexity 1 36 0 962 160 36 27 chr9 43137664 43137889 -74724738 - Charlie5 DNA MER1_type -83 2529 2303 385 222 56 0 chr9 43138817 43138925 -74723702 - MER20B DNA MER1_type -148 635 522 186 48 24 48 chr9 43138950 43138992 -74723635 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 2213 71 0 0 chr9 43138992 43139258 -74723369 - L1PA6 LINE L1 -11 6143 5878 661 319 93 40 chr9 43139680 43140078 -74722549 - MER20B DNA MER1_type -273 510 92 551 278 87 20 chr9 43141068 43141320 -74721307 - L2 LINE L2 -4 3309 3041 1356 193 46 49 chr9 43141400 43141705 -74720922 - AluJo SINE Alu -8 304 1 884 179 91 132 chr9 43142117 43142602 -74720025 + MER4C LTR ERV1 1 465 0 371 274 48 8 chr9 43142890 43143014 -74719613 - MIR3 SINE MIR -5 203 75 2373 75 0 0 chr9 43143078 43143372 -74719255 - AluY SINE Alu -17 294 1 1059 90 0 0 chr9 43143372 43143505 -74719122 - AluY SINE Alu -177 134 2 418 328 8 0 chr9 43143509 43143643 -74718984 - MIR SINE MIR -102 160 26 297 307 171 22 chr9 43144379 43144653 -74717974 + L1MC4a LINE L1 5560 5874 -1934 773 186 51 0 chr9 43144767 43144923 -74717704 - L1PA16 LINE L1 -44 6122 5959 190 246 180 74 chr9 43145398 43145520 -74717107 + MIR SINE MIR 48 182 -80 2244 98 0 0 chr9 43145705 43146002 -74716625 - AluY SINE Alu -14 297 1 282 270 17 0 chr9 43147089 43147204 -74715423 + (CA)n Simple_repeat Simple_repeat 2 118 0 286 207 0 27 chr9 43147266 43147377 -74715250 + GA-rich Low_complexity Low_complexity 2 109 0 221 155 17 0 chr9 43148489 43148547 -74714080 + (CA)n Simple_repeat Simple_repeat 2 60 0 1948 189 83 30 chr9 43148555 43149014 -74713613 + LTR2B LTR ERV1 8 490 0 389 212 8 0 chr9 43149018 43149136 -74713491 + GA-rich Low_complexity Low_complexity 1 119 0 748 91 25 25 chr9 43150027 43150148 -74712479 - 5S rRNA rRNA 0 121 1 8799 155 30 80 chr9 43150527 43152398 -74710229 - L1M1 LINE L1 -4311 3254 1477 * 10865 199 28 6 chr9 43152371 43154657 -74707970 - L1P LINE L1 -796 6769 4435 237 83 0 0 chr9 43155572 43155608 -74707019 + (CA)n Simple_repeat Simple_repeat 2 37 0 345 226 0 12 chr9 43155614 43155698 -74706929 + MER103 DNA DNA 12 94 -72 269 236 0 22 chr9 43155755 43155844 -74706783 + L2 LINE L2 1997 2083 -1231 2611 212 19 0 chr9 43156979 43157494 -74705133 - L1PB4 LINE L1 -12 6144 5620 301 231 51 0 chr9 43157769 43157847 -74704780 + L2 LINE L2 3191 3272 0 2195 191 104 38 chr9 43158062 43158591 -74704036 + LTR6A LTR ERV1 1 564 0 201 268 183 0 chr9 43159304 43159375 -74703252 + L2 LINE L2 3230 3313 0 180 336 161 15 chr9 43159459 43159596 -74703031 - L2 LINE L2 -1 3271 3115 21 89 0 0 chr9 43160402 43160458 -74702169 + AT_rich Low_complexity Low_complexity 1 56 0 604 293 100 11 chr9 43160500 43160848 -74701779 - MLT1H1 LTR MaLR -120 422 32 2537 62 0 0 chr9 43161606 43161910 -74700717 - AluY SINE Alu -7 304 1 371 106 0 45 chr9 43161910 43161969 -74700658 - L1P LINE L1 -812 5356 5304 3754 169 31 13 chr9 43161973 43162654 -74699973 + L1PA16 LINE L1 5390 6082 -84 658 125 0 19 chr9 43162659 43162763 -74699864 + L1PA16 LINE L1 6044 6145 -21 13229 208 95 17 chr9 43162774 43165815 -74696812 + L1M1 LINE L1 17 3294 -4271 10522 44 4 1 chr9 43165815 43167807 -74694820 - L1PA4 LINE L1 -1 6154 4161 893 260 110 61 chr9 43167817 43168793 -74693834 + L1M4c LINE L1 1686 2613 -3769 663 163 7 59 chr9 43168793 43168928 -74693699 + FLAM_C SINE Alu 1 128 -5 893 260 110 61 chr9 43168928 43169730 -74692897 + L1M4c LINE L1 2613 3650 -2732 1335 152 38 4 chr9 43169915 43170179 -74692448 - L1MB1 LINE L1 -14 6175 5903 27 29 0 0 chr9 43170406 43170440 -74692187 + AT_rich Low_complexity Low_complexity 1 34 0 745 264 42 62 chr9 43170485 43170891 -74691736 + L1MD2 LINE L1 5943 6340 -19 348 321 43 31 chr9 43170938 43171100 -74691527 + MIR SINE MIR 81 244 -18 267 133 0 0 chr9 43172181 43172226 -74690401 + (TA)n Simple_repeat Simple_repeat 2 46 0 274 284 46 46 chr9 43172249 43172358 -74690269 - MIR SINE MIR -73 189 81 564 255 78 86 chr9 43172394 43172790 -74689837 - L1MD2 LINE L1 -10 6349 5957 324 214 0 24 chr9 43173180 43173306 -74689321 + (TA)n Simple_repeat Simple_repeat 2 124 0 578 325 4 40 chr9 43173469 43173697 -74688930 - L2 LINE L2 0 3313 3094 2855 51 0 0 chr9 43176235 43176589 -74686038 - L1PA5 LINE L1 -7 6147 5794 194 0 39 0 chr9 43178963 43178989 -74683638 + (TTTTA)n Simple_repeat Simple_repeat 1 27 0 503 63 0 0 chr9 43179000 43179063 -74683564 - AluSq/x SINE Alu -183 129 67 517 78 0 0 chr9 43179071 43179135 -74683492 + AluSg/x SINE Alu 157 220 -92 1772 152 13 0 chr9 43179254 43179557 -74683070 - LTR8A LTR ERV1 -420 307 1 1940 122 4 0 chr9 43180309 43180635 -74681992 - AluSx SINE Alu 0 329 3 556 182 17 98 chr9 43180951 43181187 -74681440 - MER52A LTR ERV1 -1538 217 1 1382 165 44 40 chr9 43181188 43181509 -74681118 + LTR8 LTR ERV1 365 686 -5 524 186 9 0 chr9 43181526 43181639 -74680988 + (TA)n Simple_repeat Simple_repeat 1 114 0 189 241 148 0 chr9 43181809 43181863 -74680764 - L2 LINE L2 0 3272 3211 825 188 52 96 chr9 43182627 43182856 -74679771 + MER20 DNA MER1_type 1 219 0 233 284 23 45 chr9 43183578 43183666 -74678961 + L2 LINE L2 3182 3267 -46 411 320 66 66 chr9 43184951 43185024 -74677603 + L1ME LINE L1 5299 5371 -750 2254 110 0 3 chr9 43185024 43185333 -74677294 + AluSg SINE Alu 1 308 -2 411 320 66 66 chr9 43185333 43185593 -74677034 + L1ME LINE L1 5370 5629 -492 432 299 46 62 chr9 43186184 43186425 -74676202 - Charlie8 DNA MER1_type -1978 439 203 1192 253 67 47 chr9 43187001 43187330 -74675297 + L1MDb LINE L1 789 1110 -5296 2156 109 3 3 chr9 43187330 43187623 -74675004 - AluSc SINE Alu -16 293 1 1192 253 67 47 chr9 43187623 43188004 -74674623 + L1MDb LINE L1 1110 1477 -4929 301 225 12 0 chr9 43188001 43188081 -74674546 + L1MDb LINE L1 2747 2827 -3579 * 525 299 44 20 chr9 43189258 43189462 -74673165 + MIR SINE MIR 53 261 -1 233 185 12 136 chr9 43189547 43189628 -74672999 - L2 LINE L2 0 3272 3202 2156 103 0 0 chr9 43190671 43190953 -74671674 + AluSc SINE Alu 1 282 -27 232 365 17 0 chr9 43191176 43191291 -74671336 - L3b LINE CR1 -176 1407 1291 3317 181 56 15 chr9 43192621 43193367 -74669260 - L1MC2 LINE L1 -9 6335 5559 23 0 0 0 chr9 43193580 43193603 -74669024 + AT_rich Low_complexity Low_complexity 1 23 0 427 243 42 37 chr9 43194253 43194442 -74668185 + L1MCa LINE L1 1464 1653 -4773 1796 194 0 0 chr9 43194533 43194826 -74667801 - AluJb SINE Alu -19 293 1 2230 214 27 55 chr9 43194827 43195284 -74667343 + L1MD3 LINE L1 7360 7796 -199 2058 139 0 0 chr9 43195284 43195578 -74667049 + AluSx SINE Alu 1 294 -18 2230 214 27 55 chr9 43195578 43195752 -74666875 + L1MD3 LINE L1 7796 7973 -22 1561 266 38 19 chr9 43195754 43196317 -74666310 + L1M3b LINE L1 1216 1812 -4753 999 160 55 68 chr9 43196649 43196783 -74665844 - L1MC/D LINE L1 -743 5403 5400 1957 114 33 0 chr9 43196783 43197089 -74665538 - L1PA16 LINE L1 -9 6157 5842 999 160 55 68 chr9 43197089 43197264 -74665363 - L1MC/D LINE L1 -746 5400 5224 2425 102 0 0 chr9 43198448 43198761 -74663866 - AluSq SINE Alu 0 313 1 945 183 17 29 chr9 43199147 43199322 -74663305 - AluSg/x SINE Alu -6 306 134 2093 131 7 3 chr9 43199322 43199620 -74663007 - AluSx SINE Alu -13 299 1 497 127 13 0 chr9 43200035 43200114 -74662513 - MADE1 DNA Mariner 0 80 1 991 248 22 0 chr9 43201462 43201684 -74660943 + MIR SINE MIR 36 262 0 531 220 55 0 chr9 43202249 43202358 -74660269 + MIR3 SINE MIR 82 196 -12 180 350 0 50 chr9 43202608 43202688 -74659939 + L2 LINE L2 3197 3272 0 297 0 0 0 chr9 43203147 43203180 -74659447 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 194 299 65 37 chr9 43205292 43205399 -74657228 + L2 LINE L2 3197 3306 -7 215 378 199 0 chr9 43205735 43205891 -74656736 - MIR3 SINE MIR -6 202 16 25 31 0 0 chr9 43206281 43206313 -74656314 + AT_rich Low_complexity Low_complexity 1 32 0 616 111 56 0 chr9 43207162 43207270 -74655357 - L1 LINE L1 -1910 4236 4123 * 4801 226 90 35 chr9 43207265 43207656 -74654971 + L1M3b LINE L1 2917 3285 -4280 1676 187 58 0 chr9 43207656 43207982 -74654645 - MER7A DNA MER2_type 0 346 4 4801 226 90 35 chr9 43207982 43209657 -74652970 + L1M3b LINE L1 3285 5104 -2461 2815 187 21 0 chr9 43209780 43210310 -74652317 + Tigger1 DNA MER2_type 1 541 -1877 543 191 0 0 chr9 43210310 43210404 -74652223 - FLAM_A SINE Alu -48 94 1 802 257 73 2 chr9 43210490 43210910 -74651717 + MER90 LTR ERV1 56 574 -1 689 198 107 43 chr9 43212572 43212759 -74649868 + MIR SINE MIR 2 200 -62 225 281 162 36 chr9 43212862 43213029 -74649598 - L2 LINE L2 -5 3308 3121 286 238 79 0 chr9 43213373 43213436 -74649191 - MLT1H LTR MaLR -181 414 347 216 0 0 0 chr9 43213538 43213562 -74649065 + (A)n Simple_repeat Simple_repeat 1 24 0 2043 121 3 23 chr9 43213565 43213870 -74648757 + AluSc SINE Alu 1 299 -10 335 214 42 0 chr9 43213878 43213980 -74648647 - MLT1H LTR MaLR -378 171 39 239 290 45 22 chr9 43214074 43214298 -74648329 - L1M4 LINE L1 -1444 4702 4474 1268 163 10 58 chr9 43214429 43214723 -74647904 - L1MB7 LINE L1 -170 6014 5735 308 250 8 67 chr9 43215069 43215189 -74647438 - MER21-int LTR ERV1 -55 4136 4024 1828 169 77 14 chr9 43215200 43215731 -74646896 - L1MB7 LINE L1 -439 5739 5168 2494 112 3 35 chr9 43215731 43216107 -74646520 - THE1B LTR MaLR 0 364 1 1828 169 77 14 chr9 43216107 43216179 -74646448 - L1MB7 LINE L1 -1010 5168 5102 3277 145 33 35 chr9 43216218 43216881 -74645746 + L1MB3 LINE L1 5519 6180 -3 2394 156 35 9 chr9 43216913 43217343 -74645284 + MLT1C LTR MaLR 27 467 0 2237 251 45 38 chr9 43217358 43218096 -74644531 - MER21-int LTR ERV1 -1021 3170 2428 6060 159 10 76 chr9 43218126 43219314 -74643313 - MSTA-int LTR MaLR -349 1231 136 1980 167 0 13 chr9 43219314 43219625 -74643002 - AluSx SINE Alu -5 307 1 6060 159 10 76 chr9 43219625 43219753 -74642874 - MSTA-int LTR MaLR -1444 136 1 1789 160 163 39 chr9 43219753 43220134 -74642493 - MSTA LTR MaLR 0 428 1 382 304 81 69 chr9 43220334 43220669 -74641958 + L1MEd LINE L1 145 483 -5722 264 340 176 0 chr9 43220732 43220759 -74641868 + L1MEd LINE L1 532 553 -5652 312 91 0 0 chr9 43220759 43220803 -74641824 + (TA)n Simple_repeat Simple_repeat 1 44 0 264 340 176 0 chr9 43220803 43220934 -74641693 + L1MEd LINE L1 553 718 -5487 231 261 58 0 chr9 43221143 43221212 -74641415 + L1M3de LINE L1 1269 1341 -4795 501 225 3 1 chr9 43221235 43221352 -74641275 + L1M3de LINE L1 1640 1978 -4238 277 266 16 0 chr9 43221352 43221416 -74641211 + MER52A LTR ERV1 1 65 -1690 2280 226 158 24 chr9 43221727 43222359 -74640268 + MER52A LTR ERV1 61 777 -978 * 4633 166 42 21 chr9 43222334 43223161 -74639466 + MER52A LTR ERV1 911 1755 0 3224 231 73 43 chr9 43223161 43223750 -74638877 + L1MEd LINE L1 1743 2313 -3902 2097 110 16 32 chr9 43223750 43224060 -74638567 - AluSq SINE Alu -8 305 1 3224 231 73 43 chr9 43224060 43224880 -74637747 + L1MEd LINE L1 2313 3172 -3043 2040 118 4 4 chr9 43224880 43225160 -74637467 + AluSx SINE Alu 7 286 -26 3224 231 73 43 chr9 43225160 43225384 -74637243 + L1MEd LINE L1 3172 3388 -2827 279 167 37 0 chr9 43225381 43225435 -74637192 - L1MC3 LINE L1 -534 7251 7196 * 227 330 0 10 chr9 43225435 43225532 -74637095 - MLT1F1 LTR MaLR -436 131 36 603 157 164 0 chr9 43225535 43225669 -74636958 - L1MC3 LINE L1 -689 7096 6941 180 236 55 0 chr9 43225699 43225754 -74636873 + L2 LINE L2 2911 2968 -304 226 288 62 58 chr9 43226276 43226519 -74636108 - L2 LINE L2 -521 2793 2550 253 285 82 73 chr9 43226572 43226912 -74635715 - L2 LINE L2 -652 2662 2320 507 260 36 104 chr9 43227002 43227367 -74635260 - L1ME LINE L1 -342 5779 5435 232 244 207 18 chr9 43227935 43228073 -74634554 + MIR SINE MIR 18 144 -64 800 173 0 8 chr9 43229609 43229742 -74632885 + FLAM_C SINE Alu 2 133 0 298 247 85 62 chr9 43229875 43230099 -74632528 + L1ME4a LINE L1 5664 5887 -234 2403 242 35 41 chr9 43230135 43230188 -74632439 + L1M4c LINE L1 1609 1661 -4721 2236 105 0 23 chr9 43230188 43230492 -74632135 - AluSx SINE Alu -14 298 2 2403 242 35 41 chr9 43230492 43231924 -74630703 + L1M4c LINE L1 1661 3193 -3189 22 0 0 0 chr9 43232682 43232704 -74629923 + AT_rich Low_complexity Low_complexity 1 22 0 14602 175 38 48 chr9 43232711 43236598 -74626029 + L1M1 LINE L1 2005 5882 -654 2352 97 0 0 chr9 43237596 43237907 -74624720 + AluY SINE Alu 1 311 0 21 0 0 0 chr9 43238381 43238402 -74624225 + AT_rich Low_complexity Low_complexity 1 21 0 230 325 111 65 chr9 43239844 43240303 -74622324 + L1MEd LINE L1 78 557 -5562 1037 128 76 107 chr9 43240316 43240588 -74622039 + LTR12 LTR ERV1 3 1552 -480 228 258 34 22 chr9 43240665 43240754 -74621873 + LTR30 LTR ERV1 553 642 -80 679 130 4 1 chr9 43240757 43240872 -74621755 + LTR12 LTR ERV1 73 714 0 995 251 134 89 chr9 43240911 43241836 -74620791 + L1ME3A LINE L1 4835 5840 -330 4909 151 68 4 chr9 43241836 43242670 -74619957 + L1MC1 LINE L1 5435 6322 -11 995 251 134 89 chr9 43242670 43243005 -74619622 + L1ME3A LINE L1 5840 6159 -11 270 280 101 24 chr9 43243017 43243185 -74619442 + L1 LINE L1 3359 3539 -2607 776 274 91 11 chr9 43243287 43243649 -74618978 + L1 LINE L1 3714 4104 -2042 257 243 40 0 chr9 43243648 43243722 -74618905 + L1 LINE L1 4633 4709 -1437 * 298 269 34 69 chr9 43243859 43244034 -74618593 + L1 LINE L1 4889 5057 -1089 1981 126 0 0 chr9 43244627 43244904 -74617723 + AluSc SINE Alu 1 277 -32 262 0 0 0 chr9 43245735 43245769 -74616858 - AluY SINE Alu -5 294 261 1385 224 55 28 chr9 43246804 43247217 -74615410 - MER67B LTR ERV1 -243 418 1 862 95 117 0 chr9 43247561 43247698 -74614929 - AluSg/x SINE Alu -28 282 130 47 19 0 0 chr9 43247899 43247953 -74614674 + AT_rich Low_complexity Low_complexity 1 54 0 824 188 19 54 chr9 43248364 43248624 -74614003 + MER67B LTR ERV1 1 117 -397 1664 118 0 0 chr9 43248635 43248864 -74613763 + AluSg SINE Alu 11 239 -71 1433 191 44 14 chr9 43248905 43249199 -74613428 + MER67D LTR ERV1 104 406 -108 1012 203 20 0 chr9 43249720 43249922 -74612705 - Tigger6a DNA MER2_type 0 1083 878 684 212 101 40 chr9 43250660 43250858 -74611769 + MIR SINE MIR 2 211 -51 229 245 19 0 chr9 43250961 43251014 -74611613 - MIR SINE MIR -10 252 199 240 271 29 0 chr9 43251408 43251478 -74611149 - MLT1F LTR MaLR -113 429 358 * 265 265 88 0 chr9 43251451 43251519 -74611108 - MLT1H LTR MaLR -172 423 350 2042 119 3 14 chr9 43251641 43251934 -74610693 + AluSc SINE Alu 1 290 -19 335 226 42 0 chr9 43251947 43252047 -74610580 - MLT1H LTR MaLR -378 171 39 324 290 45 22 chr9 43252141 43252365 -74610262 - L1M4 LINE L1 -1444 4702 4474 1679 136 217 9 chr9 43252545 43252868 -74609759 - MSTA LTR MaLR -38 390 1 9992 140 17 35 chr9 43252870 43254475 -74608152 - MSTA-int LTR MaLR -2 1578 3 1943 133 173 32 chr9 43254477 43254852 -74607775 - MSTA LTR MaLR 0 428 1 195 129 0 0 chr9 43256320 43256351 -74606276 + (TA)n Simple_repeat Simple_repeat 2 32 0 354 206 32 0 chr9 43256693 43256756 -74605871 - MER2 DNA MER2_type 0 345 281 1000 186 42 10 chr9 43256786 43256979 -74605648 - MER2 DNA MER2_type -135 210 12 24 0 0 0 chr9 43258015 43258039 -74604588 + AT_rich Low_complexity Low_complexity 1 24 0 1878 96 7 51 chr9 43258257 43258549 -74604078 + AluSg SINE Alu 2 280 -30 29 0 0 0 chr9 43259683 43259712 -74602915 + AT_rich Low_complexity Low_complexity 1 29 0 342 0 0 0 chr9 43260022 43260060 -74602567 + (CA)n Simple_repeat Simple_repeat 2 39 0 680 198 0 8 chr9 43260354 43260480 -74602147 - FLAM_A SINE Alu -6 127 3 1631 135 4 8 chr9 43261779 43262039 -74600588 - L1MA5 LINE L1 -6 6294 6036 306 0 0 0 chr9 43262184 43262218 -74600409 + (TG)n Simple_repeat Simple_repeat 2 35 0 521 269 7 13 chr9 43262671 43262687 -74599940 - L1MA10 LINE L1 0 6334 6319 2343 246 13 21 chr9 43262687 43263296 -74599331 - L1ME1 LINE L1 -7 6159 5556 1465 243 126 22 chr9 43263299 43263444 -74599183 - L1ME1 LINE L1 -2281 3865 3737 2231 104 0 3 chr9 43263444 43263741 -74598886 + AluSg SINE Alu 1 296 -14 1465 243 126 22 chr9 43263741 43264151 -74598476 - L1ME1 LINE L1 -2409 3737 3252 6119 141 156 18 chr9 43264154 43265277 -74597350 + MER52C LTR ERV1 1 1278 0 21 36 0 0 chr9 43265800 43265828 -74596799 + AT_rich Low_complexity Low_complexity 1 28 0 973 146 0 110 chr9 43266216 43266274 -74596353 + L1 LINE L1 4325 4388 -1758 1632 77 5 27 chr9 43266274 43266496 -74596131 + AluSq SINE Alu 1 217 -96 973 146 0 110 chr9 43266496 43266683 -74595944 + L1 LINE L1 4388 4543 -1603 5232 136 40 26 chr9 43266695 43267594 -74595033 - L1MA4 LINE L1 -1 6299 5388 810 102 19 0 chr9 43267694 43267802 -74594825 - AluSq/x SINE Alu -202 111 2 787 122 8 8 chr9 43267803 43267926 -74594701 - THE1C-int LTR MaLR -1457 123 1 1745 157 77 10 chr9 43267926 43268238 -74594389 - THE1C LTR MaLR 0 375 43 22 70 0 0 chr9 43268772 43268815 -74593812 + AT_rich Low_complexity Low_complexity 1 43 0 2317 78 17 0 chr9 43268875 43269171 -74593456 + AluY SINE Alu 1 301 -10 1473 210 0 33 chr9 43269369 43269669 -74592958 - AluJo SINE Alu -12 300 11 519 215 135 77 chr9 43269892 43270218 -74592409 - L1MC5 LINE L1 -14 7947 7603 2128 129 0 0 chr9 43270223 43270518 -74592109 - AluY SINE Alu -16 295 1 2553 190 113 24 chr9 43270518 43271135 -74591492 - Tigger6a DNA MER2_type -196 887 216 1683 220 42 37 chr9 43271126 43271581 -74591046 + MLT1C LTR MaLR 11 467 0 * 1016 212 9 19 chr9 43271581 43271793 -74590834 - Tigger6a DNA MER2_type -872 211 2 184 326 150 18 chr9 43271837 43272064 -74590563 + L2 LINE L2 2928 3184 -129 462 295 112 31 chr9 43272116 43272564 -74590063 + L1ME3A LINE L1 5465 5948 -222 270 222 16 48 chr9 43273613 43273676 -74588951 - MIR SINE MIR -130 78 18 2063 167 31 51 chr9 43274652 43275102 -74587525 - MER66B LTR ERV1 0 486 46 345 314 44 61 chr9 43276392 43276688 -74585939 + MER31-int LTR ERV1 726 1016 -3920 2258 63 33 10 chr9 43277503 43277805 -74584822 + AluY SINE Alu 1 309 -2 646 108 0 0 chr9 43277818 43277911 -74584716 + AluSg/x SINE Alu 218 310 0 237 65 0 0 chr9 43277916 43277947 -74584680 + (GAAAA)n Simple_repeat Simple_repeat 3 33 0 5017 138 27 32 chr9 43279210 43279791 -74582836 + L1PB3 LINE L1 5237 5814 -340 2033 125 0 0 chr9 43279791 43280087 -74582540 + AluSg1 SINE Alu 1 296 -13 5017 138 27 32 chr9 43280087 43280425 -74582202 + L1PB3 LINE L1 5814 6152 -2 8227 188 15 24 chr9 43280742 43280755 -74581872 - L1P LINE L1 -1851 4295 4283 6194 110 13 25 chr9 43280755 43282519 -74580108 - L1PA14 LINE L1 0 6161 4423 8227 188 15 24 chr9 43282519 43283504 -74579123 - L1P LINE L1 -1863 4283 3316 1991 159 7 0 chr9 43283504 43283812 -74578815 - AluSx SINE Alu -2 310 1 8227 188 15 24 chr9 43283812 43284558 -74578069 - L1P LINE L1 -2830 3316 2565 1768 96 4 63 chr9 43284660 43284931 -74577696 - AluSq SINE Alu -58 255 1 433 226 115 51 chr9 43284937 43285172 -74577455 - L1MC5 LINE L1 -363 7598 7349 1002 265 94 33 chr9 43285613 43286117 -74576510 - L2 LINE L2 -165 3148 2606 327 25 0 0 chr9 43286723 43286763 -74575864 + (TG)n Simple_repeat Simple_repeat 2 41 0 209 333 0 0 chr9 43286764 43286821 -74575806 + MER5A DNA MER1_type 69 125 -64 227 232 29 14 chr9 43288546 43288615 -74574012 + L1MCa LINE L1 1315 1384 -5042 2410 72 3 0 chr9 43288670 43288974 -74573653 + AluY SINE Alu 1 305 -6 3535 191 32 10 chr9 43289020 43289747 -74572880 - L1 LINE L1 -855 6710 5968 2664 256 71 33 chr9 43289742 43290709 -74571918 - L1 LINE L1 -3579 3986 3057 * 2025 108 63 0 chr9 43290709 43290996 -74571631 - AluSc SINE Alu -4 305 1 2664 256 71 33 chr9 43290996 43292027 -74570600 - L1 LINE L1 -4508 3057 2048 1554 253 23 25 chr9 43292453 43292891 -74569736 - L1 LINE L1 -5844 1652 1216 2451 225 31 34 chr9 43292891 43293067 -74569560 - L1MD3 LINE L1 -20 7975 7800 2007 150 0 0 chr9 43293067 43293361 -74569266 - AluSx SINE Alu -18 294 1 2451 225 31 34 chr9 43293361 43293802 -74568825 - L1MD3 LINE L1 -195 7800 7360 1789 188 3 0 chr9 43293803 43294095 -74568532 + AluJb SINE Alu 1 293 -19 387 264 28 50 chr9 43294197 43294379 -74568248 - L1MCa LINE L1 -4785 1641 1464 7585 32 7 0 chr9 43295009 43295912 -74566715 - L1P LINE L1 -910 5236 4328 1347 61 0 0 chr9 43296030 43296193 -74566434 + AluSg SINE Alu 1 163 -147 234 187 28 75 chr9 43296254 43296361 -74566266 + (CCCCAA)n Simple_repeat Simple_repeat 1 102 0 22 21 0 62 chr9 43296810 43296834 -74565793 + AT_rich Low_complexity Low_complexity 1 22 -23 1860 126 47 4 chr9 43296834 43296994 -74565633 - AluSq SINE Alu -22 291 113 261 0 0 0 chr9 43296994 43297023 -74565604 + (TG)n Simple_repeat Simple_repeat 2 30 0 1860 126 47 4 chr9 43297023 43297139 -74565488 - AluSq SINE Alu -200 113 3 22 21 0 62 chr9 43297139 43297162 -74565465 + AT_rich Low_complexity Low_complexity 22 45 0 1451 189 29 21 chr9 43297299 43297580 -74565047 + AluJo SINE Alu 7 289 -23 39 74 0 0 chr9 43297742 43297823 -74564804 + AT_rich Low_complexity Low_complexity 1 81 0 238 311 123 8 chr9 43297981 43298216 -74564411 - L1ME LINE L1 -478 5643 5382 4806 252 28 24 chr9 43298328 43298939 -74563688 + L1PA15-16 LINE L1 1954 2561 -4288 2120 126 7 0 chr9 43298939 43299232 -74563395 - AluSx SINE Alu -17 295 1 4806 252 28 24 chr9 43299232 43300800 -74561827 + L1PA15-16 LINE L1 2561 4147 -2702 3348 190 29 3 chr9 43300808 43301424 -74561203 + MSTB-int LTR MaLR 1020 1651 0 1731 237 16 0 chr9 43301424 43301795 -74560832 + MSTB LTR MaLR 1 377 -49 2178 224 20 6 chr9 43301797 43302287 -74560340 + L1 LINE L1 4150 4646 -2203 1818 132 32 4 chr9 43302287 43302563 -74560064 + AluSx SINE Alu 2 286 -22 255 93 0 0 chr9 43302563 43302606 -74560021 + (CAAAC)n Simple_repeat Simple_repeat 2 44 0 355 183 0 14 chr9 43302613 43302684 -74559943 + L1 LINE L1 2769 2838 -3308 214 311 0 33 chr9 43303540 43303630 -74558997 + C-rich Low_complexity Low_complexity 4 90 0 490 234 70 87 chr9 43304866 43305590 -74557037 + HSREP522 Satellite telomeric 1 712 -123 323 303 156 50 chr9 43306305 43306543 -74556084 - L1M2 LINE L1 -5605 1244 982 432 298 78 105 chr9 43306697 43307069 -74555558 - L1MDb LINE L1 -5685 724 363 800 324 106 21 chr9 43307095 43307568 -74555059 - L1MDb LINE L1 -5793 616 104 24 0 0 0 chr9 43307695 43307719 -74554908 + AT_rich Low_complexity Low_complexity 1 24 0 2039 118 4 0 chr9 43308093 43308372 -74554255 - AluSc SINE Alu -19 290 11 232 208 0 0 chr9 43308615 43308663 -74553964 + MER67B LTR ERV1 38 85 -576 1375 132 15 0 chr9 43308767 43308972 -74553655 + LTR8A LTR ERV1 100 307 -420 537 104 0 0 chr9 43309091 43309158 -74553469 - AluSg/x SINE Alu -92 218 152 * 772 115 0 0 chr9 43309154 43309250 -74553377 + AluSq/x SINE Alu 34 129 -183 198 0 0 0 chr9 43309261 43309283 -74553344 + (TAAAA)n Simple_repeat Simple_repeat 1 22 0 379 291 53 46 chr9 43311259 43311410 -74551217 + L2 LINE L2 3121 3272 0 182 137 78 78 chr9 43314084 43314135 -74548492 + MER5A DNA MER1_type 83 133 -56 198 0 0 0 chr9 43315058 43315080 -74547547 + (CCCCCT)n Simple_repeat Simple_repeat 1 22 0 279 157 0 0 chr9 43315265 43315316 -74547311 + GA-rich Low_complexity Low_complexity 4 54 0 21 0 0 0 chr9 43315791 43315812 -74546815 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 43316522 43316544 -74546083 + AT_rich Low_complexity Low_complexity 1 22 0 222 317 0 0 chr9 43317201 43317261 -74545366 + (CATA)n Simple_repeat Simple_repeat 4 63 0 9386 44 9 1 chr9 43318500 43319562 -74543065 - MER11C LTR ERVK 0 1071 1 2110 37 0 71 chr9 43320164 43320459 -74542168 - AluY SINE Alu -12 299 26 2727 141 45 7 chr9 43321400 43321847 -74540780 + MER4C LTR ERV1 2 465 0 695 328 23 8 chr9 43322645 43322901 -74539726 - MIR SINE MIR -1 261 2 510 312 110 13 chr9 43323562 43323799 -74538828 + MIR SINE MIR 3 262 0 528 283 61 42 chr9 43324366 43324578 -74538049 - MLT1K LTR MaLR -1 587 372 1236 284 70 32 chr9 43324736 43325094 -74537533 - MLT1J LTR MaLR 0 511 129 2008 130 57 41 chr9 43325094 43325463 -74537164 - THE1C LTR MaLR 0 375 1 1236 284 70 32 chr9 43325463 43325572 -74537055 - MLT1J LTR MaLR -382 129 26 306 0 0 0 chr9 43325907 43325941 -74536686 + (CA)n Simple_repeat Simple_repeat 2 35 0 279 266 71 44 chr9 43326370 43326483 -74536144 + MIR3 SINE MIR 67 182 -26 1120 203 28 0 chr9 43326969 43327181 -74535446 + MER20 DNA MER1_type 1 218 -1 4819 170 69 45 chr9 43327346 43328392 -74534235 - MER11C LTR ERVK 0 1071 1 274 309 43 36 chr9 43329577 43329716 -74532911 - MIR SINE MIR -111 151 12 238 261 0 0 chr9 43329839 43329885 -74532742 + MER5A DNA MER1_type 59 104 -85 306 211 42 0 chr9 43330058 43330129 -74532498 + MER5A DNA MER1_type 116 189 0 204 40 0 0 chr9 43330361 43330386 -74532241 + (T)n Simple_repeat Simple_repeat 1 25 0 22 0 0 0 chr9 43330654 43330676 -74531951 + AT_rich Low_complexity Low_complexity 1 22 0 458 211 96 36 chr9 43330901 43331067 -74531560 - L2 LINE L2 -1 3312 3137 514 314 57 41 chr9 43331525 43331770 -74530857 - MIR SINE MIR 0 262 14 184 287 58 58 chr9 43331949 43332036 -74530591 + MIR SINE MIR 159 245 -17 744 107 48 0 chr9 43332233 43332336 -74530291 + AluSq/x SINE Alu 2 109 -204 4015 237 57 12 chr9 43332837 43333886 -74528741 + L1MC4a LINE L1 6712 7807 -1 600 356 8 8 chr9 43334144 43334380 -74528247 + MIR SINE MIR 27 262 0 260 0 0 54 chr9 43335914 43335951 -74526676 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 774 175 0 0 chr9 43336151 43336265 -74526362 + AluJb SINE Alu 2 115 -197 980 112 0 0 chr9 43336265 43336390 -74526237 + AluSg/x SINE Alu 170 294 -18 438 244 92 0 chr9 43336528 43336647 -74525980 + L2 LINE L2 3180 3309 -4 457 250 230 0 chr9 43337332 43337480 -74525147 - MIR SINE MIR -8 254 73 257 298 93 6 chr9 43339569 43339730 -74522897 - HAL1 LINE L1 -814 1693 1519 417 300 70 13 chr9 43339776 43340006 -74522621 + HAL1 LINE L1 1491 1733 -774 1767 166 0 7 chr9 43340998 43341306 -74521321 + AluSx SINE Alu 1 306 0 4929 150 48 27 chr9 43341520 43342036 -74520591 - L1MA9 LINE L1 0 6312 5765 372 22 0 0 chr9 43342036 43342081 -74520546 + (TG)n Simple_repeat Simple_repeat 2 46 0 4929 150 48 27 chr9 43342081 43342525 -74520102 - L1MA9 LINE L1 -547 5765 5332 2008 167 45 31 chr9 43342525 43342884 -74519743 + THE1B LTR MaLR 1 364 0 11506 122 11 0 chr9 43342884 43344447 -74518180 + THE1B-int LTR MaLR 1 1580 0 2387 121 36 36 chr9 43344447 43344811 -74517816 + THE1B LTR MaLR 1 364 0 4997 197 65 16 chr9 43344821 43345669 -74516958 - L1MA9 LINE L1 -857 5289 4373 2098 91 40 0 chr9 43345669 43345945 -74516682 - AluY SINE Alu -24 287 1 4997 197 65 16 chr9 43345945 43346209 -74516418 - L1MA9 LINE L1 -1773 4373 4123 * 5542 223 88 35 chr9 43346204 43346594 -74516033 + L1M1 LINE L1 2917 3285 -4280 1937 182 30 3 chr9 43346594 43346929 -74515698 - MER7A DNA MER2_type -1 345 4 5542 223 88 35 chr9 43346929 43348608 -74514019 + L1M1 LINE L1 3285 5104 -2461 2999 191 25 0 chr9 43348731 43349259 -74513368 + Tigger1 DNA MER2_type 1 541 -1877 541 202 0 0 chr9 43349259 43349353 -74513274 - FLAM_A SINE Alu -48 94 1 743 275 12 0 chr9 43349439 43349610 -74513017 + MER90 LTR ERV1 56 228 -386 811 250 171 0 chr9 43349633 43349849 -74512778 + MER90 LTR ERV1 361 613 -1 684 212 101 40 chr9 43351510 43351708 -74510919 + MIR SINE MIR 2 211 -51 229 245 19 0 chr9 43351811 43351864 -74510763 - MIR SINE MIR -10 252 199 309 235 281 5 chr9 43352259 43352440 -74510187 - MLT1G1 LTR MaLR -114 453 148 297 250 26 104 chr9 43352420 43352498 -74510129 - MLT1H LTR MaLR -342 213 130 * 2015 117 3 27 chr9 43352498 43352797 -74509830 + AluSc SINE Alu 1 292 -17 297 250 26 104 chr9 43352797 43352964 -74509663 - MLT1H LTR MaLR -425 130 1 2128 179 19 0 chr9 43353127 43353491 -74509136 + Tigger1 DNA MER2_type 171 541 -1877 536 213 0 0 chr9 43353491 43353585 -74509042 - FLAM_A SINE Alu -48 94 1 727 268 11 17 chr9 43353670 43353849 -74508778 + MER90 LTR ERV1 51 228 -386 798 251 172 0 chr9 43353872 43354087 -74508540 + MER90 LTR ERV1 362 613 -1 1287 179 14 57 chr9 43355499 43355796 -74506831 - L1MB7 LINE L1 -170 6014 5731 372 254 8 63 chr9 43356138 43356264 -74506363 - MER21-int LTR ERV1 -55 4136 4018 1991 177 73 12 chr9 43356269 43356800 -74505827 - L1MB7 LINE L1 -439 5739 5169 2487 136 3 35 chr9 43356800 43357175 -74505452 - THE1B LTR MaLR 0 364 2 1991 177 73 12 chr9 43357175 43357248 -74505379 - L1MB7 LINE L1 -1009 5169 5102 248 91 18 73 chr9 43357250 43357305 -74505322 + MSTD LTR MaLR 1 52 -344 3594 136 28 15 chr9 43357305 43357917 -74504710 + L1MB3 LINE L1 5536 6155 -28 2554 158 35 12 chr9 43357969 43358400 -74504227 + MLT1C LTR MaLR 27 467 0 2347 261 45 38 chr9 43358415 43359153 -74503474 - MER21-int LTR ERV1 -1021 3170 2428 6878 178 24 25 chr9 43359182 43360352 -74502275 - MSTA-int LTR MaLR -354 1297 128 2019 154 0 19 chr9 43360352 43360670 -74501957 - AluSx SINE Alu 0 312 1 6878 178 24 25 chr9 43360670 43360798 -74501829 - MSTA-int LTR MaLR -1523 128 1 1829 152 163 39 chr9 43360798 43361179 -74501448 - MSTA LTR MaLR 0 428 1 396 298 80 68 chr9 43361378 43361714 -74500913 + L1MEd LINE L1 58 397 -5722 237 130 0 0 chr9 43361826 43361872 -74500755 + LTR66 LTR ERVL 394 439 -171 * 243 109 0 0 chr9 43361850 43361896 -74500731 - LTR66 LTR ERVL -171 439 394 1753 99 14 39 chr9 43362206 43362488 -74500139 - AluY SINE Alu -8 303 29 21 0 0 0 chr9 43362598 43362619 -74500008 + AT_rich Low_complexity Low_complexity 1 21 0 2632 110 5 21 chr9 43362619 43363001 -74499626 - L1PA13 LINE L1 -11 6152 5777 440 202 56 0 chr9 43363163 43363252 -74499375 - FLAM_C SINE Alu -15 128 35 22 35 0 0 chr9 43363923 43363952 -74498675 + AT_rich Low_complexity Low_complexity 1 29 0 3049 72 5 11 chr9 43363954 43364330 -74498297 + THE1C LTR MaLR 1 374 -1 30 69 0 0 chr9 43364570 43364628 -74497999 + AT_rich Low_complexity Low_complexity 1 58 0 22 0 0 0 chr9 43365233 43365255 -74497372 + AT_rich Low_complexity Low_complexity 1 22 0 3842 182 45 15 chr9 43365468 43366222 -74496405 + L1MC2 LINE L1 5559 6335 -9 218 375 17 0 chr9 43367545 43367665 -74494962 + L3b LINE CR1 1286 1407 -176 2137 106 0 0 chr9 43367888 43368170 -74494457 - AluSc SINE Alu -27 282 1 233 185 12 136 chr9 43369212 43369293 -74493334 + L2 LINE L2 3202 3272 0 497 319 34 10 chr9 43369378 43369582 -74493045 - MIR SINE MIR -1 261 53 223 267 17 0 chr9 43370234 43370294 -74492333 + L3b LINE CR1 1347 1407 -176 1462 254 63 48 chr9 43370747 43371219 -74491408 - L1MDb LINE L1 -3569 2837 2374 2253 92 3 3 chr9 43371219 43371512 -74491115 + AluSc SINE Alu 1 293 -16 1462 254 63 48 chr9 43371512 43371866 -74490761 - L1MDb LINE L1 -4032 2374 769 507 270 43 99 chr9 43372421 43372725 -74489902 + Charlie8 DNA MER1_type 203 489 -1928 240 318 55 47 chr9 43373324 43373516 -74489111 - L1ME LINE L1 -567 5554 5358 2303 110 0 0 chr9 43373516 43373824 -74488803 - AluSg SINE Alu -2 308 1 240 318 55 47 chr9 43373824 43373867 -74488760 - L1ME LINE L1 -763 5358 5317 244 273 23 45 chr9 43375182 43375270 -74487357 - L2 LINE L2 -46 3267 3182 903 188 52 96 chr9 43376011 43376240 -74486387 - MER20 DNA MER1_type 0 219 1 214 204 148 0 chr9 43377006 43377060 -74485567 + L2 LINE L2 3252 3313 0 470 234 3 1 chr9 43377430 43377547 -74485080 + L1M2 LINE L1 1640 1978 -4238 267 281 16 0 chr9 43377547 43377611 -74485016 + MER52A LTR ERV1 1 65 -1690 2357 232 152 14 chr9 43377933 43378563 -74484064 + MER52A LTR ERV1 61 777 -978 * 4719 161 40 24 chr9 43378538 43379370 -74483257 + MER52A LTR ERV1 911 1755 0 3182 239 72 40 chr9 43379370 43379959 -74482668 + L1MEc LINE L1 1743 2312 -3903 2040 129 0 16 chr9 43379959 43380269 -74482358 - AluSq SINE Alu -8 305 1 3182 239 72 40 chr9 43380269 43381087 -74481540 + L1MEc LINE L1 2312 3174 -3041 1981 140 0 3 chr9 43381087 43381372 -74481255 + AluSx SINE Alu 3 286 -26 3182 239 72 40 chr9 43381372 43381595 -74481032 + L1MEc LINE L1 3174 3388 -2827 312 143 36 0 chr9 43381592 43381648 -74480979 - L1MC3 LINE L1 -534 7251 7194 * 263 297 0 11 chr9 43381652 43381743 -74480884 - MLT1F1 LTR MaLR -442 125 36 603 157 164 0 chr9 43381746 43381880 -74480747 - L1MC3 LINE L1 -689 7096 6941 197 304 53 49 chr9 43382485 43382728 -74479899 - L2 LINE L2 -521 2793 2550 345 264 79 73 chr9 43382781 43383122 -74479505 - L2 LINE L2 -652 2662 2320 486 246 43 114 chr9 43383229 43383577 -74479050 - L1ME LINE L1 -359 5762 5435 258 235 207 18 chr9 43384147 43384285 -74478342 + MIR SINE MIR 18 144 -64 821 165 0 8 chr9 43385807 43385940 -74476687 + FLAM_C SINE Alu 2 133 0 238 256 85 66 chr9 43386073 43386300 -74476327 + L1ME LINE L1 5664 5887 -234 445 127 0 89 chr9 43386389 43386468 -74476159 - AluSx SINE Alu -13 296 225 1162 123 0 0 chr9 43386468 43386623 -74476004 - AluSx SINE Alu -155 157 3 2742 221 58 26 chr9 43386624 43388059 -74474568 + L1ME1 LINE L1 1758 3237 -3189 28 0 0 0 chr9 43388814 43388842 -74473785 + AT_rich Low_complexity Low_complexity 1 28 0 14204 181 43 46 chr9 43388843 43392475 -74470152 + L1M4c LINE L1 2005 5637 -745 2865 160 126 3 chr9 43392584 43393173 -74469454 - MER52C LTR ERV1 -617 661 1 1419 253 58 32 chr9 43393176 43393580 -74469047 + L1ME1 LINE L1 3534 3955 -2471 2307 97 0 3 chr9 43393580 43393878 -74468749 - AluSg SINE Alu -13 297 1 1419 253 58 32 chr9 43393878 43393976 -74468651 + L1ME1 LINE L1 3955 4049 -2377 2247 255 13 21 chr9 43394026 43394651 -74467976 + L1ME1 LINE L1 5836 6614 0 333 0 0 0 chr9 43395107 43395144 -74467483 + (CA)n Simple_repeat Simple_repeat 2 38 0 1700 126 4 8 chr9 43395291 43395552 -74467075 + L1MA5 LINE L1 6035 6294 -6 703 195 0 8 chr9 43396852 43396980 -74465647 + FLAM_A SINE Alu 3 129 -4 288 0 0 0 chr9 43397273 43397305 -74465322 + (TG)n Simple_repeat Simple_repeat 1 32 0 29 0 0 0 chr9 43397616 43397645 -74464982 + AT_rich Low_complexity Low_complexity 1 29 0 1921 93 7 52 chr9 43398779 43399070 -74463557 - AluSg SINE Alu -31 279 2 977 207 31 0 chr9 43400347 43400540 -74462087 + MER2 DNA MER2_type 12 210 -135 327 222 32 0 chr9 43400570 43400633 -74461994 + MER2 DNA MER2_type 281 345 0 195 129 0 0 chr9 43400978 43401009 -74461618 + (TA)n Simple_repeat Simple_repeat 1 31 0 400 293 34 87 chr9 43402373 43402473 -74460154 + MIR3 SINE MIR 6 110 -98 1964 128 173 32 chr9 43402473 43402848 -74459779 + MSTA LTR MaLR 1 428 0 9776 143 18 34 chr9 43402850 43404453 -74458174 + MSTA-int LTR MaLR 3 1578 -2 1833 141 187 45 chr9 43404455 43404778 -74457849 + MSTA LTR MaLR 1 386 -42 2088 133 0 3 chr9 43404778 43405071 -74457556 + AluSc SINE Alu 3 294 -15 1833 141 187 45 chr9 43405071 43405122 -74457505 + MSTA LTR MaLR 386 428 0 400 293 34 87 chr9 43405122 43405223 -74457404 + MIR3 SINE MIR 112 202 -6 984 205 28 28 chr9 43405351 43405673 -74456954 - L1ME3 LINE L1 -92 6070 5719 360 271 145 36 chr9 43405675 43405896 -74456731 - L1MCa LINE L1 -4277 2330 2086 192 238 0 0 chr9 43406746 43406809 -74455818 + (TA)n Simple_repeat Simple_repeat 1 63 0 27 49 0 0 chr9 43407052 43407093 -74455534 + AT_rich Low_complexity Low_complexity 1 41 0 23 33 0 0 chr9 43407212 43407242 -74455385 + AT_rich Low_complexity Low_complexity 1 30 0 180 111 0 0 chr9 43407268 43407295 -74455332 + (CA)n Simple_repeat Simple_repeat 2 28 0 4313 70 4 25 chr9 43407842 43408282 -74454345 + L1PA8 LINE L1 5627 6054 -118 2323 88 0 0 chr9 43408282 43408578 -74454049 + AluY SINE Alu 1 296 -15 4313 70 4 25 chr9 43408578 43408695 -74453932 + L1PA8 LINE L1 6054 6172 0 2191 34 64 0 chr9 43408699 43408991 -74453636 + AluY SINE Alu 1 309 0 3417 180 25 48 chr9 43409041 43409792 -74452835 - L1 LINE L1 -864 5486 4753 * 4167 267 112 48 chr9 43409787 43410757 -74451870 - L1 LINE L1 -3579 2771 1865 2275 109 0 10 chr9 43410757 43411069 -74451558 - AluSc SINE Alu 0 309 1 4167 267 112 48 chr9 43411069 43413059 -74449568 - L1 LINE L1 -4485 1865 1 2540 227 37 50 chr9 43413059 43413235 -74449392 - L1MD3 LINE L1 -20 7975 7798 1996 146 0 0 chr9 43413235 43413529 -74449098 - AluSx SINE Alu -18 294 1 2540 227 37 50 chr9 43413529 43413980 -74448647 - L1MD3 LINE L1 -197 7798 7356 1760 192 3 0 chr9 43413980 43414272 -74448355 + AluJb SINE Alu 1 293 -19 2540 227 37 50 chr9 43414272 43414366 -74448261 - L1MD3 LINE L1 -639 7356 7262 508 238 42 37 chr9 43414363 43414552 -74448075 - L1MCa LINE L1 -4773 1653 1464 * 2091 85 3 28 chr9 43415202 43415485 -74447142 - AluY SINE Alu -7 304 29 21 0 0 0 chr9 43415594 43415615 -74447012 + AT_rich Low_complexity Low_complexity 1 21 0 2645 110 5 21 chr9 43415615 43415997 -74446630 - L1PA13 LINE L1 -11 6152 5777 500 180 56 0 chr9 43416159 43416248 -74446379 - FLAM_C SINE Alu -15 128 35 22 35 0 0 chr9 43416919 43416948 -74445679 + AT_rich Low_complexity Low_complexity 1 29 0 2906 81 24 8 chr9 43416950 43417319 -74445308 + THE1C LTR MaLR 1 375 0 243 197 4 24 chr9 43417341 43417431 -74445196 - L1MEc LINE L1 -4862 1684 1479 40 49 0 0 chr9 43417558 43417619 -74445008 + AT_rich Low_complexity Low_complexity 1 61 0 339 25 0 0 chr9 43419649 43419689 -74442938 + (CA)n Simple_repeat Simple_repeat 2 41 0 2427 46 7 20 chr9 43421570 43421874 -74440753 + AluY SINE Alu 1 300 -11 250 192 135 39 chr9 43423724 43423828 -74438799 + L1M LINE L1 5265 5378 -800 1960 122 10 55 chr9 43423830 43424142 -74438485 - AluSx SINE Alu -14 298 1 2332 105 3 3 chr9 43426377 43426690 -74435937 - AluSp SINE Alu 0 313 1 203 209 23 0 chr9 43426783 43426826 -74435801 + CT-rich Low_complexity Low_complexity 1 44 0 920 259 122 22 chr9 43427213 43427615 -74435012 + LTR16A1 LTR ERVL 16 457 0 1947 144 0 35 chr9 43427846 43428159 -74434468 - AluSx SINE Alu -10 302 1 183 359 68 19 chr9 43428219 43428322 -74434305 + L2 LINE L2 3206 3313 0 1065 228 24 62 chr9 43430079 43430368 -74432259 - MER70B LTR ERVL -297 281 4 711 270 52 26 chr9 43430374 43430604 -74432023 - L2 LINE L2 -687 2627 2392 2520 52 10 0 chr9 43430708 43431014 -74431613 + AluY SINE Alu 1 309 -2 22 0 0 0 chr9 43431165 43431187 -74431440 + AT_rich Low_complexity Low_complexity 1 22 0 668 24 24 0 chr9 43431537 43431622 -74431005 + (TTATA)n Simple_repeat Simple_repeat 4 90 0 2277 78 0 14 chr9 43431622 43431907 -74430720 - AluY SINE Alu -28 283 1 275 265 20 10 chr9 43432333 43432431 -74430196 + LTR41 LTR ERVL 3 101 -672 352 177 44 87 chr9 43432786 43432914 -74429713 - LTR48 LTR ERV1 -30 739 540 15040 131 91 13 chr9 43433019 43435533 -74427094 + L1M1 LINE L1 729 3438 -4127 236 380 38 20 chr9 43435785 43435955 -74426672 - MIR SINE MIR -75 187 7 2475 74 0 0 chr9 43436286 43436596 -74426031 - AluY SINE Alu -1 310 1 262 130 78 78 chr9 43437883 43437960 -74424667 + MER72 LTR ERV1 646 722 0 748 167 107 6 chr9 43438632 43438800 -74423827 + L1MB2 LINE L1 5986 6170 -1 256 267 114 64 chr9 43438912 43439017 -74423610 + L1M4 LINE L1 2662 2760 -3386 2258 104 0 0 chr9 43439017 43439306 -74423321 + AluSc SINE Alu 1 289 -20 256 267 114 64 chr9 43439306 43439560 -74423067 + L1M4 LINE L1 2760 3039 -3107 386 275 99 42 chr9 43439723 43440217 -74422410 + L1M4 LINE L1 4881 5402 -744 186 71 0 0 chr9 43440278 43440306 -74422321 + (TG)n Simple_repeat Simple_repeat 2 29 0 456 215 9 9 chr9 43440643 43440750 -74421877 + L1MEc LINE L1 1640 1746 -4650 277 266 16 0 chr9 43440750 43440814 -74421813 + MER52A LTR ERV1 1 65 -1690 6002 206 201 16 chr9 43441125 43442556 -74420071 + MER52A LTR ERV1 61 1755 0 3102 235 78 41 chr9 43442556 43443145 -74419482 + L1MEc LINE L1 1743 2309 -3906 2029 123 16 32 chr9 43443145 43443455 -74419172 - AluSq SINE Alu -8 305 1 3102 235 78 41 chr9 43443455 43444259 -74418368 + L1MEc LINE L1 2309 3172 -3043 2037 123 3 3 chr9 43444259 43444543 -74418084 + AluSx SINE Alu 3 286 -26 3102 235 78 41 chr9 43444543 43444769 -74417858 + L1MEc LINE L1 3172 3388 -2827 275 132 75 0 chr9 43444766 43444819 -74417808 - L1MC3 LINE L1 -534 7251 7195 * 238 320 0 10 chr9 43444819 43444916 -74417711 - MLT1F1 LTR MaLR -436 131 36 540 158 173 0 chr9 43444919 43445052 -74417575 - L1MC3 LINE L1 -689 7096 6941 211 300 53 49 chr9 43445659 43445902 -74416725 - L2 LINE L2 -521 2793 2550 342 267 79 73 chr9 43445955 43446296 -74416331 - L2 LINE L2 -652 2662 2320 469 257 40 112 chr9 43446403 43446751 -74415876 - L1ME LINE L1 -359 5762 5435 248 235 207 18 chr9 43447725 43447863 -74414764 + MIR SINE MIR 18 144 -64 821 165 0 8 chr9 43449388 43449521 -74413106 + FLAM_C SINE Alu 2 133 0 315 259 74 51 chr9 43449683 43449881 -74412746 + L1ME4a LINE L1 5689 5887 -234 2315 242 32 44 chr9 43449917 43449970 -74412657 + L1M4c LINE L1 1609 1661 -4721 2246 102 0 23 chr9 43449970 43450274 -74412353 - AluSx SINE Alu -14 298 2 2315 242 32 44 chr9 43450274 43451709 -74410918 + L1M4c LINE L1 1661 3193 -3189 21 36 0 0 chr9 43452466 43452494 -74410133 + AT_rich Low_complexity Low_complexity 1 28 0 1173 241 41 37 chr9 43452495 43452966 -74409661 + L1M4c LINE L1 2005 2486 -3896 5060 228 94 33 chr9 43453073 43454694 -74407933 - L1MCa LINE L1 -2517 3909 2117 1813 181 61 3 chr9 43454694 43455020 -74407607 + MER7A DNA MER2_type 4 346 0 5060 228 94 33 chr9 43455020 43455405 -74407222 - L1MCa LINE L1 -4309 2117 1757 4754 194 70 24 chr9 43455400 43455673 -74406954 + L1MA9 LINE L1 4123 4382 -1764 * 2107 98 36 0 chr9 43455673 43455950 -74406677 + AluY SINE Alu 1 287 -24 4754 194 70 24 chr9 43455950 43456792 -74405835 + L1MA9 LINE L1 4382 5289 -857 2228 137 39 39 chr9 43456802 43457166 -74405461 - THE1B LTR MaLR 0 364 1 11321 126 10 2 chr9 43457166 43458733 -74403894 - THE1B-int LTR MaLR 0 1580 1 2000 167 42 31 chr9 43458733 43459093 -74403534 - THE1B LTR MaLR 0 364 1 4895 148 52 27 chr9 43459093 43459533 -74403094 + L1MA9 LINE L1 5332 5760 -552 243 0 0 0 chr9 43459533 43459560 -74403067 + (CA)n Simple_repeat Simple_repeat 2 28 0 4895 148 52 27 chr9 43459560 43460076 -74402551 + L1MA9 LINE L1 5760 6312 0 1673 177 0 7 chr9 43460290 43460598 -74402029 - AluSx SINE Alu 0 306 1 491 309 56 13 chr9 43461572 43461805 -74400822 - HAL1 LINE L1 -774 1733 1491 261 309 90 5 chr9 43461824 43462012 -74400615 + HAL1 LINE L1 1490 1693 -814 2550 68 0 0 chr9 43462926 43463237 -74399390 + AluY SINE Alu 1 311 0 26 0 0 0 chr9 43463713 43463739 -74398888 + AT_rich Low_complexity Low_complexity 1 26 0 24 32 0 0 chr9 43463836 43463867 -74398760 + AT_rich Low_complexity Low_complexity 1 31 0 323 315 112 63 chr9 43465156 43465629 -74396998 + L1MEd LINE L1 64 559 -5560 927 153 81 94 chr9 43465640 43465875 -74396752 + LTR12 LTR ERV1 3 234 -480 234 247 34 22 chr9 43465989 43466078 -74396549 + LTR30 LTR ERV1 553 642 -80 660 148 4 1 chr9 43466081 43466196 -74396431 + LTR12 LTR ERV1 73 714 0 287 62 0 107 chr9 43466518 43466630 -74395997 + (CCCCCA)n Simple_repeat Simple_repeat 5 104 0 1175 142 38 28 chr9 43467092 43467304 -74395323 + AluJo SINE Alu 1 214 -98 557 248 28 75 chr9 43467426 43467664 -74394963 - MIR SINE MIR -36 226 1 219 293 104 19 chr9 43467950 43468056 -74394571 - L2 LINE L2 0 3272 3158 2358 83 0 3 chr9 43468727 43469027 -74393600 + AluSg SINE Alu 1 299 -11 360 333 23 33 chr9 43469030 43469169 -74393458 + MIR SINE MIR 28 160 -48 572 256 221 5 chr9 43469455 43469654 -74392973 + MIR SINE MIR 14 255 -7 292 329 12 0 chr9 43470195 43470280 -74392347 - MIR3 SINE MIR -30 178 93 201 125 0 0 chr9 43470944 43470976 -74391651 - MIR SINE MIR -10 252 221 352 314 21 14 chr9 43471249 43471389 -74391238 + MIR SINE MIR 35 175 -87 438 305 40 7 chr9 43471647 43471798 -74390829 + MIR3 SINE MIR 19 174 -34 223 226 19 0 chr9 43472048 43472101 -74390526 + L3b LINE CR1 1335 1388 -195 256 219 281 0 chr9 43472697 43472793 -74389834 + L2 LINE L2 3190 3312 -1 688 270 0 27 chr9 43472809 43472994 -74389633 + MIR SINE MIR 77 256 -6 369 303 42 0 chr9 43473002 43473121 -74389506 - MIR SINE MIR -55 207 84 2420 157 7 4 chr9 43474359 43474823 -74387804 + TAR1 Satellite telomeric 1604 2068 -43 439 113 0 87 chr9 43474968 43475163 -74387464 + (TTAGGG)n Simple_repeat Simple_repeat 1 178 0 8703 226 10 36 chr9 43475219 43475959 -74386668 - L1M4 LINE L1 -927 5219 4461 1080 171 0 0 chr9 43475959 43476135 -74386492 - AluSp SINE Alu -2 311 136 8703 226 10 36 chr9 43476135 43478369 -74384258 - L1M4 LINE L1 -1685 4461 2280 388 279 27 9 chr9 43478602 43478713 -74383914 - MER5B DNA MER1_type -3 175 63 441 36 0 0 chr9 43478713 43478768 -74383859 + (TC)n Simple_repeat Simple_repeat 2 56 0 1079 237 170 74 chr9 43479363 43479852 -74382775 + MLT1F LTR MaLR 6 541 -1 32 0 0 0 chr9 43481158 43481190 -74381437 + AT_rich Low_complexity Low_complexity 1 32 0 214 365 218 19 chr9 43481588 43481744 -74380883 + MIR3 SINE MIR 16 202 -6 183 308 75 47 chr9 43482080 43482187 -74380440 - L2 LINE L2 -7 3306 3197 29 47 0 0 chr9 43483117 43483160 -74379467 + AT_rich Low_complexity Low_complexity 1 43 0 201 39 0 0 chr9 43484299 43484325 -74378302 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 194 338 0 50 chr9 43484782 43484862 -74377765 - L2 LINE L2 0 3272 3197 549 211 55 0 chr9 43485112 43485221 -74377406 - MIR3 SINE MIR -12 196 82 993 246 23 0 chr9 43485789 43486009 -74376618 - MIR SINE MIR 0 262 38 512 90 26 0 chr9 43487362 43487440 -74375187 + MADE1 DNA Mariner 1 80 0 1932 137 55 3 chr9 43487855 43488147 -74374480 + AluSx SINE Alu 1 307 -5 932 187 20 0 chr9 43488147 43488348 -74374279 + AluSg/x SINE Alu 132 335 0 2406 102 0 6 chr9 43488736 43489051 -74373576 + AluSq SINE Alu 1 313 0 3928 172 54 58 chr9 43490235 43490417 -74372210 + L1MC2 LINE L1 5224 5405 -939 1975 114 33 0 chr9 43490417 43490719 -74371908 + L1PA16 LINE L1 5842 6157 -9 3928 172 54 58 chr9 43490719 43491598 -74371029 + L1MC2 LINE L1 5405 6288 -56 2549 52 0 3 chr9 43491598 43491904 -74370723 - AluY SINE Alu -6 305 1 208 333 0 0 chr9 43493753 43493810 -74368817 - MER5A DNA MER1_type -64 125 69 327 25 0 0 chr9 43493811 43493851 -74368776 + (CA)n Simple_repeat Simple_repeat 2 41 0 1006 265 94 33 chr9 43494457 43494961 -74367666 + L2 LINE L2 2606 3148 -165 645 223 122 77 chr9 43495402 43495643 -74366984 + L1MC5 LINE L1 7349 7578 -383 2086 102 0 54 chr9 43495643 43495956 -74366671 + AluSx SINE Alu 1 296 -16 645 223 122 77 chr9 43495956 43496287 -74366340 + L1MC5 LINE L1 7578 7947 -14 1519 211 0 30 chr9 43496508 43496807 -74365820 + AluJo SINE Alu 11 300 -12 2363 74 14 0 chr9 43497005 43497302 -74365325 - AluY SINE Alu -10 301 1 22 70 0 0 chr9 43497362 43497405 -74365222 + AT_rich Low_complexity Low_complexity 1 43 0 1602 157 77 10 chr9 43497939 43498251 -74364376 + THE1C LTR MaLR 43 375 0 9920 106 36 42 chr9 43498251 43498374 -74364253 + THE1C-int LTR MaLR 1 123 -1457 2208 126 3 0 chr9 43498374 43498684 -74363943 + AluSq SINE Alu 1 311 -2 9920 106 36 42 chr9 43498684 43500148 -74362479 + THE1C-int LTR MaLR 123 1579 -1 2076 141 53 14 chr9 43500149 43500510 -74362117 + THE1C LTR MaLR 1 375 0 288 250 89 89 chr9 43500750 43500869 -74361758 + MIR SINE MIR 81 202 -60 2191 116 0 0 chr9 43500869 43501172 -74361455 - AluSc SINE Alu -6 303 1 288 250 89 89 chr9 43501172 43501232 -74361395 + MIR SINE MIR 201 260 -2 239 333 55 30 chr9 43502340 43502541 -74360086 - MER67A LTR ERV1 0 543 338 2335 70 0 7 chr9 43502587 43502886 -74359741 + AluY SINE Alu 1 297 -14 2092 124 3 0 chr9 43503310 43503601 -74359026 + AluSc SINE Alu 11 302 -7 8643 183 11 21 chr9 43503663 43504604 -74358023 + L1PA14 LINE L1 2371 3320 -2826 2023 156 7 0 chr9 43504604 43504912 -74357715 + AluSx SINE Alu 1 310 -2 8643 183 11 21 chr9 43504912 43505896 -74356731 + L1PA14 LINE L1 3320 4276 -1870 5970 112 8 7 chr9 43505897 43507651 -74354976 + L1PA14 LINE L1 4423 6161 0 4693 129 37 23 chr9 43507988 43508323 -74354304 - L1PB3 LINE L1 -5 6149 5820 2101 115 0 0 chr9 43508323 43508619 -74354008 - AluSg1 SINE Alu -13 296 1 4693 129 37 23 chr9 43508619 43508931 -74353696 - L1PB3 LINE L1 -334 5820 5484 189 0 0 0 chr9 43508931 43508952 -74353675 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 4693 129 37 23 chr9 43508952 43509204 -74353423 - L1PB3 LINE L1 -670 5484 5237 640 86 0 0 chr9 43510480 43510573 -74352054 - Alu SINE Alu 0 312 220 2034 58 36 11 chr9 43510583 43510885 -74351742 - AluY SINE Alu 0 309 1 261 316 0 0 chr9 43511874 43511950 -74350677 - MER31-int LTR ERV1 -4089 847 772 1958 170 16 32 chr9 43513293 43513735 -74348892 + MER66B LTR ERV1 52 486 0 265 277 15 15 chr9 43514704 43514769 -74347858 + MIR3 SINE MIR 14 78 -130 228 303 118 23 chr9 43515817 43516259 -74346368 - L1ME3A LINE L1 -222 5948 5465 918 201 10 19 chr9 43516583 43516792 -74345835 + Tigger6a DNA MER2_type 5 211 -872 1452 224 42 37 chr9 43516792 43517247 -74345380 - MLT1C LTR MaLR 0 467 11 * 3045 196 93 24 chr9 43517244 43517855 -74344772 + Tigger6a DNA MER2_type 220 902 -695 2115 133 0 0 chr9 43517855 43518149 -74344478 + AluY SINE Alu 1 294 -17 3045 196 93 24 chr9 43518149 43518345 -74344282 + Tigger6a DNA MER2_type 902 1083 0 1298 191 44 14 chr9 43518863 43519157 -74343470 - MER67D LTR ERV1 -108 406 104 1714 126 0 0 chr9 43519199 43519438 -74343189 - AluSc SINE Alu -70 239 1 749 193 13 52 chr9 43519438 43519699 -74342928 - MER67B LTR ERV1 -397 225 1 44 35 0 0 chr9 43520110 43520168 -74342459 + AT_rich Low_complexity Low_complexity 1 58 0 822 128 114 0 chr9 43520354 43520503 -74342124 + AluY SINE Alu 118 283 -28 1270 239 76 28 chr9 43520847 43521260 -74341367 + MER67B LTR ERV1 1 418 -243 248 53 0 0 chr9 43522298 43522336 -74340291 + AluY SINE Alu 264 301 -1 1968 137 0 0 chr9 43523172 43523449 -74339178 - AluSc SINE Alu -32 277 1 639 287 91 11 chr9 43524505 43524867 -74337760 - L1M4 LINE L1 -2042 4104 3714 255 265 138 22 chr9 43524969 43525150 -74337477 - L1M4 LINE L1 -2607 3539 3338 904 238 95 104 chr9 43525151 43525487 -74337140 - L1ME3A LINE L1 -11 6159 5821 4476 159 65 2 chr9 43525487 43526323 -74336304 - L1MC1 LINE L1 -11 6322 5435 904 238 95 104 chr9 43526323 43527013 -74335614 - L1ME3A LINE L1 -349 5821 5108 617 160 4 1 chr9 43527285 43527400 -74335227 - LTR12 LTR ERV1 0 714 73 233 247 34 22 chr9 43527403 43527492 -74335135 - LTR30 LTR ERV1 -80 642 553 861 162 81 94 chr9 43527607 43527841 -74334786 - LTR12 LTR ERV1 -481 233 3 298 304 123 68 chr9 43527852 43528322 -74334305 - L1MEd LINE L1 -5560 559 64 24 32 0 0 chr9 43529611 43529642 -74332985 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr9 43529739 43529765 -74332862 + AT_rich Low_complexity Low_complexity 1 26 0 2188 77 3 11 chr9 43530239 43530524 -74332103 - AluY SINE Alu 0 311 29 21 0 0 0 chr9 43530633 43530654 -74331973 + AT_rich Low_complexity Low_complexity 1 21 0 2577 97 5 21 chr9 43530654 43531036 -74331591 - L1PA13 LINE L1 -11 6152 5777 460 180 56 0 chr9 43531198 43531287 -74331340 - AluJb SINE Alu -184 128 35 22 35 0 0 chr9 43531962 43531991 -74330636 + AT_rich Low_complexity Low_complexity 1 29 0 2866 72 5 11 chr9 43531993 43532369 -74330258 + THE1C LTR MaLR 1 374 -1 30 69 0 0 chr9 43532609 43532667 -74329960 + AT_rich Low_complexity Low_complexity 1 58 0 22 0 0 0 chr9 43533265 43533287 -74329340 + AT_rich Low_complexity Low_complexity 1 22 0 3609 175 45 13 chr9 43533504 43534257 -74328370 + L1MC2 LINE L1 5559 6335 -9 236 317 50 33 chr9 43535585 43535705 -74326922 + L3b LINE CR1 1286 1407 -176 2183 99 0 0 chr9 43535929 43536211 -74326416 - AluSc SINE Alu -27 282 1 235 185 12 136 chr9 43537253 43537334 -74325293 + L2 LINE L2 3202 3272 0 512 324 34 10 chr9 43537419 43537623 -74325004 - MIR SINE MIR -1 261 53 202 283 17 0 chr9 43538274 43538334 -74324293 + L3b LINE CR1 1347 1407 -176 315 237 11 32 chr9 43538789 43538882 -74323745 - L1MDb LINE L1 -3569 2837 2747 * 1384 249 43 62 chr9 43538879 43539263 -74323364 - L1MDb LINE L1 -4929 1477 1128 2123 107 3 3 chr9 43539263 43539554 -74323073 + AluSc SINE Alu 3 293 -16 1384 249 43 62 chr9 43539554 43539908 -74322719 - L1MDb LINE L1 -5278 1128 769 545 280 48 90 chr9 43540459 43540791 -74321836 + Charlie8 DNA MER1_type 203 520 -1897 273 324 39 39 chr9 43541368 43541550 -74321077 - L1ME LINE L1 -573 5548 5367 2278 101 3 0 chr9 43541554 43541860 -74320767 - AluSg SINE Alu -3 307 1 255 296 15 68 chr9 43543176 43543308 -74319319 - L2 LINE L2 -7 3306 3182 682 201 57 100 chr9 43544030 43544259 -74318368 - MER20 DNA MER1_type 0 219 1 393 303 113 103 chr9 43544426 43544843 -74317784 + L1MEd LINE L1 188 618 -5587 1221 106 0 0 chr9 43544843 43545023 -74317604 + (TA)n Simple_repeat Simple_repeat 1 180 0 393 303 113 103 chr9 43545023 43545373 -74317254 + L1MEd LINE L1 618 963 -5242 230 246 58 0 chr9 43545390 43545459 -74317168 + L1MEd LINE L1 973 1045 -5170 465 246 11 2 chr9 43545486 43545626 -74317001 + L1M1 LINE L1 2907 3108 -4518 2387 233 152 14 chr9 43545975 43546605 -74316022 + MER52A LTR ERV1 61 777 -978 * 4686 166 38 26 chr9 43546581 43547414 -74315213 + MER52A LTR ERV1 913 1755 0 328 281 73 73 chr9 43547414 43547688 -74314939 + L1MEd LINE L1 1743 2016 -4380 262 285 146 0 chr9 43547802 43547925 -74314702 - L1ME LINE L1 -613 5557 5417 191 326 150 18 chr9 43547943 43548170 -74314457 - L2 LINE L2 -129 3184 2928 982 206 10 19 chr9 43548217 43548426 -74314201 + Tigger6a DNA MER2_type 5 211 -872 1631 220 42 37 chr9 43548426 43548881 -74313746 - MLT1C LTR MaLR 0 467 11 * 2436 191 113 24 chr9 43548872 43549489 -74313138 + Tigger6a DNA MER2_type 216 887 -196 2365 93 0 0 chr9 43549489 43549800 -74312827 + AluY SINE Alu 1 311 0 1705 173 0 7 chr9 43551359 43551672 -74310955 + AluSx SINE Alu 1 311 0 4608 142 65 33 chr9 43551882 43552391 -74310236 - L1MA9 LINE L1 0 6312 5756 207 0 0 0 chr9 43552391 43552414 -74310213 + (TG)n Simple_repeat Simple_repeat 2 24 0 4608 142 65 33 chr9 43552414 43552854 -74309773 - L1MA9 LINE L1 -556 5756 5332 1932 156 42 31 chr9 43552854 43553214 -74309413 + THE1B LTR MaLR 1 364 0 10425 126 13 6 chr9 43553214 43554782 -74307845 + THE1B-int LTR MaLR 1 1580 0 760 95 0 0 chr9 43554782 43554877 -74307750 + THE1B LTR MaLR 1 95 -269 3003 242 38 11 chr9 43554977 43555738 -74306889 - L1MA9 LINE L1 -944 5202 4380 2135 83 36 0 chr9 43555738 43556015 -74306612 - AluY SINE Alu -24 287 1 3003 242 38 11 chr9 43556015 43556279 -74306348 - L1MA9 LINE L1 -1766 4380 4124 * 4474 228 90 27 chr9 43556275 43556660 -74305967 + L1M1 LINE L1 2917 3276 -4289 1731 181 58 0 chr9 43556660 43556986 -74305641 - MER7A DNA MER2_type 0 346 4 4474 228 90 27 chr9 43556986 43558470 -74304157 + L1M1 LINE L1 3276 4910 -2655 392 263 11 0 chr9 43558982 43559077 -74303550 - Zaphod DNA AcHobo -1 4030 3935 183 42 0 0 chr9 43559572 43559596 -74303031 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1304 227 25 108 chr9 43559812 43559843 -74302784 + MLT1D LTR MaLR 1 33 -472 2062 156 37 6 chr9 43559843 43560196 -74302431 + THE1B LTR MaLR 1 364 0 1304 227 25 108 chr9 43560196 43560449 -74302178 + MLT1D LTR MaLR 33 225 -280 1098 155 10 5 chr9 43560449 43560656 -74301971 - L1MA6 LINE L1 -6 6294 6087 1304 227 25 108 chr9 43560656 43560890 -74301737 + MLT1D LTR MaLR 225 477 -28 309 349 14 37 chr9 43561496 43561714 -74300913 - L2 LINE L2 -2248 1066 854 194 318 58 52 chr9 43561779 43561933 -74300694 - L2 LINE L2 -2570 744 590 5596 32 0 9 chr9 43563977 43564737 -74297890 + SVA Other Other 624 1384 -2 267 188 0 47 chr9 43564737 43564801 -74297826 + LTR8A LTR ERV1 567 627 -100 704 241 29 23 chr9 43564907 43565081 -74297546 - MER45A DNA AcHobo -3 175 1 24 67 0 0 chr9 43565282 43565327 -74297300 + AT_rich Low_complexity Low_complexity 1 45 0 33 66 0 0 chr9 43565386 43565447 -74297180 + AT_rich Low_complexity Low_complexity 1 61 0 180 0 0 0 chr9 43566349 43566369 -74296258 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 943 336 50 7 chr9 43566399 43566815 -74295812 + LTR16B LTR ERVL 22 455 -9 1766 168 76 8 chr9 43567878 43568360 -74294267 - L1M4 LINE L1 -480 5698 5188 1623 108 4 50 chr9 43568370 43568628 -74293999 - THE1B LTR MaLR 0 364 119 352 181 14 14 chr9 43568710 43568782 -74293845 + L1M4 LINE L1 5391 5462 -712 209 298 40 96 chr9 43568782 43568980 -74293647 - L2 LINE L2 -8 3305 3119 681 335 124 16 chr9 43569088 43569530 -74293097 - L2 LINE L2 -353 2961 2472 1656 214 106 9 chr9 43571594 43572019 -74290608 + MER31B LTR ERV1 1 466 0 1837 154 3 16 chr9 43572162 43572467 -74290160 + AluSg SINE Alu 1 301 -9 30 0 0 0 chr9 43572513 43572543 -74290084 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chr9 43572794 43572820 -74289807 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr9 43573736 43573759 -74288868 + AT_rich Low_complexity Low_complexity 1 23 0 30 69 0 0 chr9 43574136 43574194 -74288433 + AT_rich Low_complexity Low_complexity 1 58 0 216 214 0 0 chr9 43574595 43574637 -74287990 + T-rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr9 43574703 43574724 -74287903 + AT_rich Low_complexity Low_complexity 1 21 0 207 114 0 0 chr9 43575614 43575649 -74286978 + (TG)n Simple_repeat Simple_repeat 2 36 0 22 56 0 0 chr9 43576129 43576165 -74286462 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr9 43576320 43576342 -74286285 + AT_rich Low_complexity Low_complexity 1 22 0 1613 178 35 0 chr9 43576441 43576728 -74285899 - 7SLRNA srpRNA srpRNA -2 318 22 2370 155 21 16 chr9 43576971 43577397 -74285230 - MSTA LTR MaLR 0 428 1 7624 195 66 10 chr9 43577397 43578960 -74283667 - MSTA-int LTR MaLR 0 1651 1 2598 126 24 5 chr9 43578960 43579380 -74283247 - MSTA LTR MaLR 0 428 1 22 35 0 0 chr9 43580434 43580463 -74282164 + AT_rich Low_complexity Low_complexity 1 29 0 1705 139 0 4 chr9 43581442 43581736 -74280891 - AluSx SINE Alu 0 327 35 22 0 0 0 chr9 43581820 43581842 -74280785 + AT_rich Low_complexity Low_complexity 1 22 0 480 18 0 0 chr9 43582523 43582580 -74280047 + (TCTA)n Simple_repeat Simple_repeat 1 57 0 24 53 0 0 chr9 43583088 43583126 -74279501 + AT_rich Low_complexity Low_complexity 1 38 0 24 32 0 0 chr9 43583474 43583505 -74279122 + AT_rich Low_complexity Low_complexity 1 31 0 2586 30 0 0 chr9 43583652 43583954 -74278673 - AluY SINE Alu -9 302 1 50 31 0 0 chr9 43584453 43584517 -74278110 + AT_rich Low_complexity Low_complexity 1 64 0 687 267 106 45 chr9 43584900 43585244 -74277383 + L1M4 LINE L1 2948 3270 -2876 2028 140 0 0 chr9 43585244 43585552 -74277075 + AluSx SINE Alu 1 308 -4 687 267 106 45 chr9 43585552 43585848 -74276779 + L1M4 LINE L1 3270 3627 -2519 5907 19 0 0 chr9 43585997 43586675 -74275952 - L1PA2 LINE L1 -89 6066 5389 3675 40 0 0 chr9 43586675 43587122 -74275505 + L1P LINE L1 3557 4003 -2143 461 234 18 42 chr9 43587109 43587276 -74275351 + L1M4 LINE L1 3601 3763 -2383 * 180 179 0 0 chr9 43587281 43587320 -74275307 + (TG)n Simple_repeat Simple_repeat 2 40 0 282 283 33 0 chr9 43587615 43587707 -74274920 + CT-rich Low_complexity Low_complexity 6 100 0 1519 264 43 48 chr9 43587721 43588389 -74274238 - L1M4 LINE L1 -1909 4237 3573 554 228 134 35 chr9 43590138 43590340 -74272287 + MER77 LTR ERV1 4 225 -380 1224 280 56 30 chr9 43590360 43590788 -74271839 + MER77 LTR ERV1 161 599 -6 488 327 79 25 chr9 43590838 43591205 -74271422 - L1MEc LINE L1 -4574 1822 1436 284 357 75 9 chr9 43591239 43591452 -74271175 - L2 LINE L2 -4 3309 3083 317 332 71 37 chr9 43591828 43592153 -74270474 - L1MEc LINE L1 -5284 921 586 1663 63 18 0 chr9 43592166 43592387 -74270240 - L1PA8 LINE L1 0 6172 5948 4284 79 18 20 chr9 43592387 43592995 -74269632 - L1PA7 LINE L1 -42 6112 5506 2379 74 0 7 chr9 43593273 43593583 -74269044 + AluY SINE Alu 1 308 -3 25 0 0 0 chr9 43594849 43594874 -74267753 + AT_rich Low_complexity Low_complexity 1 25 0 1018 271 77 6 chr9 43595251 43595591 -74267036 + MLT1A1 LTR MaLR 1 364 -1 188 292 79 22 chr9 43596666 43596755 -74265872 - L2 LINE L2 -4 3268 3175 1352 204 60 27 chr9 43597203 43597536 -74265091 - MER2 DNA MER2_type 0 344 1 569 216 175 6 chr9 43597883 43598054 -74264573 + MLT1A1 LTR MaLR 1 200 -165 435 116 3 5 chr9 43598048 43598125 -74264502 + MLT1A1 LTR MaLR 289 390 0 * 703 325 13 10 chr9 43598339 43598653 -74263974 + L1MEc LINE L1 486 800 -5596 365 269 108 24 chr9 43598694 43598991 -74263636 + L1MEc LINE L1 933 1254 -5142 322 267 67 13 chr9 43599108 43599204 -74263423 + HAL1 LINE L1 1389 1497 -1010 189 0 0 0 chr9 43599204 43599225 -74263402 + (CA)n Simple_repeat Simple_repeat 2 22 0 322 267 67 13 chr9 43599225 43599278 -74263349 + HAL1 LINE L1 1497 1546 -961 23 0 0 0 chr9 43599279 43599302 -74263325 + AT_rich Low_complexity Low_complexity 1 23 0 426 299 22 76 chr9 43599388 43599572 -74263055 + MER96 DNA MER1_type? 2 175 0 345 244 0 0 chr9 43599696 43599778 -74262849 + L1MEc LINE L1 1985 2066 -4330 397 247 69 53 chr9 43599816 43600063 -74262564 + L1MEc LINE L1 2047 2297 -4099 316 280 24 16 chr9 43600123 43600248 -74262379 + L1MEc LINE L1 2370 2495 -3720 454 227 91 8 chr9 43600265 43600397 -74262230 + L1MA3 LINE L1 6163 6305 0 572 198 0 16 chr9 43600508 43600629 -74261998 + MLT1A1 LTR MaLR 1 119 -246 1012 207 11 0 chr9 43600675 43600854 -74261773 + MLT1A1 LTR MaLR 122 302 -63 28 0 0 0 chr9 43600866 43600894 -74261733 + AT_rich Low_complexity Low_complexity 1 28 0 682 278 73 25 chr9 43600955 43601519 -74261108 + L1MEc LINE L1 3190 3780 -2435 282 281 95 29 chr9 43601526 43601736 -74260891 + L1MEc LINE L1 3952 4175 -2040 579 259 20 10 chr9 43601750 43601951 -74260676 + L1MEc LINE L1 4525 4727 -1488 30 27 0 0 chr9 43601953 43601990 -74260637 + AT_rich Low_complexity Low_complexity 1 37 0 1074 279 89 34 chr9 43602016 43602782 -74259845 + L1M4 LINE L1 2269 3076 -3070 1405 214 15 35 chr9 43602882 43603224 -74259403 + LTR22A LTR ERVK 124 458 0 756 31 20 0 chr9 43603224 43603322 -74259305 - L1P LINE L1 -766 5406 5307 3506 72 8 6 chr9 43603322 43603795 -74258832 + L1PA7 LINE L1 5680 6154 0 186 250 33 50 chr9 43603840 43603900 -74258727 - L2 LINE L2 -873 2441 2383 416 261 49 49 chr9 43603901 43604085 -74258542 - L2 LINE L2 -906 2408 2225 2405 68 0 3 chr9 43605318 43605625 -74257002 - AluY SINE Alu -5 306 1 29 47 0 0 chr9 43605696 43605739 -74256888 + AT_rich Low_complexity Low_complexity 1 43 0 1191 221 74 34 chr9 43606092 43606445 -74256182 + MLT1A2 LTR MaLR 4 370 -4 293 260 55 0 chr9 43608290 43608363 -74254264 + L1ME4a LINE L1 5976 6052 -69 656 212 0 14 chr9 43608420 43608566 -74254061 - AluJb SINE Alu -6 306 163 338 216 108 7 chr9 43608566 43608705 -74253922 + L1M1 LINE L1 3305 3457 -4108 302 282 24 0 chr9 43608821 43608906 -74253721 - MER20 DNA MER1_type -132 87 1 285 257 71 44 chr9 43609392 43609505 -74253122 - MIR3 SINE MIR -26 182 67 351 0 0 0 chr9 43609936 43609975 -74252652 + (TG)n Simple_repeat Simple_repeat 2 40 0 413 284 43 0 chr9 43610308 43610417 -74252210 + MLT1J LTR MaLR 26 139 -372 1338 164 62 54 chr9 43610417 43610770 -74251857 + THE1C LTR MaLR 1 356 -19 316 207 24 24 chr9 43612811 43612893 -74249734 + THE1C LTR MaLR 1 82 -293 936 176 0 0 chr9 43613256 43613415 -74249212 - AluY SINE Alu -152 159 1 784 197 0 0 chr9 43613674 43613821 -74248806 - AluSg/x SINE Alu -5 307 161 725 311 36 26 chr9 43613826 43614241 -74248386 - L1ME2 LINE L1 -191 5973 5555 2148 83 0 30 chr9 43614242 43614544 -74248083 - AluY SINE Alu -18 293 1 307 315 59 88 chr9 43614602 43614875 -74247752 + L1MEd LINE L1 364 628 -5491 261 208 0 0 chr9 43614890 43614938 -74247689 - MER58 DNA MER1_type -15 2405 2358 303 311 57 6 chr9 43614940 43615117 -74247510 + L1MEd LINE L1 965 1150 -4969 21 0 0 0 chr9 43616567 43616588 -74246039 + AT_rich Low_complexity Low_complexity 1 21 0 418 262 83 21 chr9 43616968 43617203 -74245424 - MER102b DNA MER1_type -1 340 81 201 218 0 58 chr9 43617880 43617967 -74244660 + A-rich Low_complexity Low_complexity 4 85 0 21 0 0 0 chr9 43619559 43619580 -74243047 + AT_rich Low_complexity Low_complexity 1 21 0 2955 179 89 14 chr9 43619625 43619762 -74242865 - L1MA6 LINE L1 -367 5933 5808 601 13 26 0 chr9 43619762 43619840 -74242787 + (TAGA)n Simple_repeat Simple_repeat 3 82 0 2955 179 89 14 chr9 43619840 43620421 -74242206 - L1MA6 LINE L1 -492 5808 5183 2266 83 0 3 chr9 43620857 43621146 -74241481 + AluSx SINE Alu 1 288 -24 1570 211 112 36 chr9 43621172 43621670 -74240957 - L1ME2 LINE L1 -58 6106 5571 585 225 136 9 chr9 43621667 43621884 -74240743 - L1MEc LINE L1 -841 2461 2175 * 251 226 75 32 chr9 43621901 43621994 -74240633 - L1MEc LINE L1 -5451 972 876 913 70 0 0 chr9 43622003 43622118 -74240509 - AluY SINE Alu -13 298 184 232 312 52 0 chr9 43622819 43622896 -74239731 + L2 LINE L2 3231 3311 -2 2147 104 38 41 chr9 43624244 43624609 -74238018 + THE1B LTR MaLR 1 364 0 376 128 186 23 chr9 43624609 43624695 -74237932 + THE1B-int LTR MaLR 1 100 -1480 1348 109 0 5 chr9 43626112 43626296 -74236331 - AluSq SINE Alu -103 210 28 317 177 0 32 chr9 43626296 43626358 -74236269 - AluJo SINE Alu -159 143 84 427 211 13 0 chr9 43626373 43626449 -74236178 + MER2 DNA MER2_type 268 344 -1 1499 153 136 0 chr9 43626852 43627160 -74235467 - L1MB3 LINE L1 -2 6181 5832 293 173 49 12 chr9 43627168 43627249 -74235378 + MER20B DNA MER1_type 602 685 -98 242 157 39 0 chr9 43627286 43627337 -74235290 + MER20B DNA MER1_type 674 726 -57 256 272 12 37 chr9 43627919 43628000 -74234627 + MLT1F LTR MaLR 51 129 -413 341 303 138 24 chr9 43628000 43628424 -74234203 - L1MB3 LINE L1 -390 5731 5258 437 32 0 16 chr9 43628878 43628941 -74233686 - Harlequin LTR ERV1 -5263 1633 1572 * 4933 54 10 3 chr9 43628934 43629562 -74233065 - Harlequin LTR ERV1 -6003 893 262 2639 98 5 0 chr9 43629557 43629935 -74232692 - Harlequin LTR ERV1 -6516 380 1 * 396 62 0 0 chr9 43629935 43629983 -74232644 - LTR2B LTR ERV1 0 490 443 10573 72 0 6 chr9 43630083 43631479 -74231148 + L1P LINE L1 19 1406 -4740 797 214 41 38 chr9 43631987 43632254 -74230373 + L1MC4 LINE L1 7775 8042 0 209 257 20 20 chr9 43632441 43632542 -74230085 + (TA)n Simple_repeat Simple_repeat 1 101 0 916 133 0 0 chr9 43632906 43633041 -74229586 + L1P3 LINE L1 10 144 -6317 1088 208 10 0 chr9 43633943 43634150 -74228477 + MER2 DNA MER2_type 1 209 -136 659 317 45 8 chr9 43634616 43634859 -74227768 - MIR SINE MIR -3 259 8 1643 142 0 4 chr9 43635419 43635680 -74226947 - L1PA15 LINE L1 -4 6161 5902 315 191 0 0 chr9 43635853 43635916 -74226711 + (TATATG)n Simple_repeat Simple_repeat 3 65 0 189 0 0 0 chr9 43636016 43636037 -74226590 + (TA)n Simple_repeat Simple_repeat 2 22 0 1961 201 41 35 chr9 43636675 43637137 -74225490 + MLT1C LTR MaLR 3 467 0 279 0 0 0 chr9 43637524 43637555 -74225072 + (TG)n Simple_repeat Simple_repeat 1 31 0 1234 210 159 42 chr9 43638746 43639155 -74223472 - MSTB2 LTR MaLR 0 457 1 388 319 32 51 chr9 43642029 43642186 -74220441 - L2 LINE L2 -192 3080 2927 256 277 69 0 chr9 43642397 43642498 -74220129 + MER103 DNA DNA 59 166 0 727 211 57 113 chr9 43642704 43643111 -74219516 + MLT1B LTR MaLR 7 390 0 441 285 90 77 chr9 43643244 43643717 -74218910 + MLT1G1 LTR MaLR 82 594 -1 225 0 0 0 chr9 43644458 43644483 -74218144 + (CA)n Simple_repeat Simple_repeat 1 25 0 189 270 0 0 chr9 43644911 43645000 -74217627 + CT-rich Low_complexity Low_complexity 3 91 0 200 280 0 0 chr9 43645094 43645144 -74217483 + CT-rich Low_complexity Low_complexity 3 52 0 3363 241 146 32 chr9 43646685 43648002 -74214625 + L1MDa LINE L1 580 2022 -4518 418 242 108 0 chr9 43648208 43648365 -74214262 + L1MDa LINE L1 2120 2293 -4247 * 581 237 163 6 chr9 43648352 43648584 -74214043 + L1MD2 LINE L1 6061 7773 -12 347 0 23 0 chr9 43650291 43650334 -74212293 + (TAGA)n Simple_repeat Simple_repeat 3 46 0 2428 62 0 0 chr9 43650930 43651234 -74211393 + AluY SINE Alu 1 304 -7 24 0 0 0 chr9 43651467 43651491 -74211136 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr9 43651771 43651800 -74210827 + AT_rich Low_complexity Low_complexity 1 29 0 744 296 84 12 chr9 43651834 43652155 -74210472 - MER115 DNA AcHobo 0 693 350 470 351 44 18 chr9 43654621 43654849 -74207778 - MIR SINE MIR -26 236 3 262 225 18 27 chr9 43655538 43655649 -74206978 + (TTTA)n Simple_repeat Simple_repeat 3 112 0 5143 85 11 14 chr9 43655649 43656224 -74206403 - L1PA7 LINE L1 -148 6006 5431 2768 39 6 0 chr9 43656224 43656561 -74206066 - L1PA4 LINE L1 -2 6153 5815 5143 85 11 14 chr9 43656561 43657251 -74205376 - L1PA7 LINE L1 -723 5431 4743 * 8694 108 10 2 chr9 43657247 43657366 -74205261 + L1P LINE L1 2323 2440 -3706 324 0 0 0 chr9 43657366 43657402 -74205225 + (TA)n Simple_repeat Simple_repeat 1 36 0 8694 108 10 2 chr9 43657402 43658601 -74204026 + L1P LINE L1 2440 3651 -2495 2177 118 0 3 chr9 43658927 43659232 -74203395 - AluSg SINE Alu -6 304 1 257 312 128 0 chr9 43659380 43659489 -74203138 - L1ME LINE L1 -525 5639 5517 22 35 0 0 chr9 43659492 43659521 -74203106 + AT_rich Low_complexity Low_complexity 1 29 0 723 194 18 48 chr9 43659720 43659885 -74202742 - AluJo SINE Alu -144 168 9 338 298 29 0 chr9 43660384 43660488 -74202139 + L2 LINE L2 3191 3297 -16 253 318 54 61 chr9 43661046 43661194 -74201433 + MIR SINE MIR 61 207 -55 23 0 0 0 chr9 43661477 43661500 -74201127 + AT_rich Low_complexity Low_complexity 1 23 0 230 286 223 0 chr9 43663856 43663968 -74198659 - L2 LINE L2 0 3313 3177 306 243 14 0 chr9 43664145 43664215 -74198412 - MER69 DNA AcHobo -1 2525 2455 1485 204 7 4 chr9 43664946 43665225 -74197402 + AluJo SINE Alu 1 280 -32 211 27 27 27 chr9 43665225 43665262 -74197365 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 245 277 12 24 chr9 43665457 43665540 -74197087 - L1ME3A LINE L1 -48 6122 6041 189 0 0 0 chr9 43665616 43665637 -74196990 + (T)n Simple_repeat Simple_repeat 1 21 0 5103 33 2 0 chr9 43665666 43666273 -74196354 - L1PA3 LINE L1 -1 6154 5547 2212 103 0 3 chr9 43666362 43666653 -74195974 - AluSq SINE Alu -23 290 1 605 237 103 47 chr9 43666653 43666885 -74195742 - L1MC4 LINE L1 -5 8037 7793 471 298 122 50 chr9 43668032 43668535 -74194092 - L1MC4a LINE L1 -1895 5913 5357 1846 91 18 100 chr9 43668535 43668874 -74193753 - AluYb8 SINE Alu 0 318 8 471 298 122 50 chr9 43668874 43668985 -74193642 - L1MC4a LINE L1 -2451 5357 5255 269 132 0 0 chr9 43669046 43669084 -74193543 - U2 snRNA snRNA -149 39 2 280 321 61 20 chr9 43669763 43669959 -74192668 - MLT1L LTR MaLR -42 573 370 226 190 25 76 chr9 43670306 43670385 -74192242 - MLT1L LTR MaLR -532 83 9 1706 195 39 23 chr9 43671194 43671578 -74191049 + MLT1B LTR MaLR 1 390 0 24 32 0 0 chr9 43672461 43672492 -74190135 + AT_rich Low_complexity Low_complexity 1 31 0 203 343 60 30 chr9 43672494 43672695 -74189932 - L3b LINE CR1 -140 1443 1237 2022 137 76 15 chr9 43672988 43673331 -74189296 - THE1B LTR MaLR 0 364 1 7535 148 27 33 chr9 43673336 43674501 -74188126 - THE1B-int LTR MaLR -6 1574 408 1087 114 19 13 chr9 43674501 43674659 -74187968 - AluSg/x SINE Alu -20 292 134 7535 148 27 33 chr9 43674659 43675063 -74187564 - THE1B-int LTR MaLR -1172 408 3 1940 126 89 15 chr9 43675065 43675391 -74187236 - THE1B LTR MaLR 0 364 15 216 86 0 0 chr9 43675880 43675915 -74186712 + (T)n Simple_repeat Simple_repeat 1 35 0 234 336 29 39 chr9 43676257 43676361 -74186266 + MIR3 SINE MIR 67 169 -39 28 48 0 0 chr9 43679567 43679609 -74183018 + AT_rich Low_complexity Low_complexity 1 42 0 23 0 0 0 chr9 43680636 43680659 -74181968 + AT_rich Low_complexity Low_complexity 1 23 0 247 356 26 9 chr9 43681097 43681212 -74181415 - L2 LINE L2 -936 2378 2262 663 243 28 23 chr9 43681339 43681516 -74181111 - MER5B DNA MER1_type 0 178 1 477 261 39 78 chr9 43681534 43681653 -74180974 + MER5B DNA MER1_type 3 114 -64 2009 123 0 32 chr9 43681653 43681962 -74180665 - AluSx SINE Alu -13 299 1 477 261 39 78 chr9 43681962 43682022 -74180605 + MER5B DNA MER1_type 114 175 -3 2430 41 0 53 chr9 43682123 43682443 -74180184 - AluY SINE Alu -8 303 1 186 273 0 0 chr9 43682889 43682933 -74179694 + MER5B DNA MER1_type 1 44 -134 2320 43 3 3 chr9 43682933 43683215 -74179412 + AluY SINE Alu 1 282 -29 457 198 10 0 chr9 43683358 43683454 -74179173 + MSTA LTR MaLR 1 97 -331 601 258 158 39 chr9 43683559 43683838 -74178789 - THE1-int LTR MaLR -362 1218 907 951 194 94 21 chr9 43683842 43684130 -74178497 + MSTA LTR MaLR 66 374 -54 385 180 38 3 chr9 43684160 43684261 -74178366 - MST-int LTR MaLR -972 661 506 5318 224 54 27 chr9 43684364 43685892 -74176735 + MSTA-int LTR MaLR 15 1583 -68 351 180 0 0 chr9 43685964 43686025 -74176602 - MSTA LTR MaLR -51 377 317 267 179 39 39 chr9 43686027 43686105 -74176522 + MSTA-int LTR MaLR 1574 1651 0 228 281 42 0 chr9 43686105 43686201 -74176426 + MSTA LTR MaLR 1 100 -328 312 233 117 10 chr9 43686246 43686349 -74176278 + MSTA LTR MaLR 58 171 -257 1230 210 15 52 chr9 43686352 43686695 -74175932 + MSTA-int LTR MaLR 1322 1651 0 526 156 10 0 chr9 43686695 43686791 -74175836 + MSTA LTR MaLR 1 97 -331 249 196 18 0 chr9 43686887 43686943 -74175684 + THE1-int LTR MaLR 911 967 -613 * 651 200 234 21 chr9 43686931 43687166 -74175461 - THE1-int LTR MaLR -389 1191 907 894 258 52 11 chr9 43687191 43687459 -74175168 + MSTA LTR MaLR 96 374 -54 299 239 196 7 chr9 43687488 43687626 -74175001 - MST-int LTR MaLR -981 670 507 278 197 15 0 chr9 43687632 43687698 -74174929 + MSTA-int LTR MaLR 36 102 -1549 708 233 79 65 chr9 43687820 43688112 -74174515 + MSTA LTR MaLR 75 372 -56 503 199 153 10 chr9 43688132 43688286 -74174341 - MST-int LTR MaLR -963 661 463 * 5432 236 49 20 chr9 43688281 43689859 -74172768 + MSTA-int LTR MaLR 28 1651 0 394 237 21 0 chr9 43689859 43689956 -74172671 + MSTA LTR MaLR 1 99 -329 280 267 109 0 chr9 43690005 43690106 -74172521 + MSTA LTR MaLR 60 171 -257 1181 213 30 42 chr9 43690111 43690444 -74172183 + MST-int LTR MaLR 1323 1651 0 314 191 32 0 chr9 43690444 43690507 -74172120 + MSTA LTR MaLR 1 65 -363 496 242 200 29 chr9 43690668 43690908 -74171719 - MST-int LTR MaLR -395 1256 976 547 250 49 11 chr9 43690913 43691097 -74171530 + MSTA LTR MaLR 76 266 -162 306 301 37 7 chr9 43691101 43691237 -74171390 - THE1-int LTR MaLR -975 605 466 * 5163 239 55 24 chr9 43691234 43692810 -74169817 + MST-int LTR MaLR 27 1651 0 383 189 28 38 chr9 43692810 43692916 -74169711 + MSTA LTR MaLR 1 105 -323 324 231 0 0 chr9 43693033 43693098 -74169529 + MSTA LTR MaLR 95 159 -269 1257 217 18 39 chr9 43693108 43693444 -74169183 + MSTA-int LTR MaLR 1321 1649 -2 440 198 10 0 chr9 43693446 43693542 -74169085 + MSTA LTR MaLR 1 97 -331 249 196 18 0 chr9 43693638 43693694 -74168933 + THE1-int LTR MaLR 911 967 -613 * 610 245 191 21 chr9 43693685 43693926 -74168701 - THE1-int LTR MaLR -392 1188 907 960 191 94 21 chr9 43693930 43694218 -74168409 + MSTA LTR MaLR 66 374 -54 306 208 14 5 chr9 43694254 43694349 -74168278 - MST-int LTR MaLR -990 661 506 5690 215 50 29 chr9 43694474 43696065 -74166562 + MSTA-int LTR MaLR 28 1651 0 394 237 21 0 chr9 43696065 43696162 -74166465 + MSTA LTR MaLR 1 99 -329 257 280 120 0 chr9 43696211 43696311 -74166316 + MSTA LTR MaLR 60 171 -257 1122 222 30 42 chr9 43696316 43696649 -74165978 + MSTA-int LTR MaLR 1323 1651 0 314 191 32 0 chr9 43696649 43696712 -74165915 + MSTA LTR MaLR 1 65 -363 2152 130 0 0 chr9 43697375 43697675 -74164952 - AluSx SINE Alu -9 303 4 24 0 0 0 chr9 43697747 43697771 -74164856 + AT_rich Low_complexity Low_complexity 1 24 0 206 318 75 75 chr9 43698126 43698378 -74164249 - L2 LINE L2 -934 2380 2129 23 0 0 0 chr9 43698593 43698616 -74164011 + AT_rich Low_complexity Low_complexity 1 23 0 237 242 0 32 chr9 43698958 43699020 -74163607 + CT-rich Low_complexity Low_complexity 2 61 0 308 358 80 16 chr9 43701124 43701311 -74161316 + L2 LINE L2 2574 2772 -542 1400 137 4 31 chr9 43701394 43701650 -74160977 - L1PA13 LINE L1 -2 6161 5913 244 242 16 0 chr9 43702147 43702159 -74160468 + MER3 DNA MER1_type 37 49 -160 326 141 0 77 chr9 43702159 43702237 -74160390 - MER3 DNA MER1_type -1 208 137 2135 95 7 16 chr9 43702487 43702791 -74159836 - AluSc SINE Alu -8 301 1 21 0 0 0 chr9 43705507 43705528 -74157099 + AT_rich Low_complexity Low_complexity 1 21 0 235 298 12 48 chr9 43706161 43706245 -74156382 - L3 LINE CR1 -254 1323 1243 393 271 0 0 chr9 43706362 43706458 -74156169 - MER20 DNA MER1_type -5 214 119 28 48 0 0 chr9 43708956 43708998 -74153629 + AT_rich Low_complexity Low_complexity 1 42 0 1425 144 9 9 chr9 43709252 43709481 -74153146 - MER30 DNA MER1_type -1 229 1 438 250 103 7 chr9 43709685 43709821 -74152806 - MER45C DNA AcHobo -94 859 711 918 254 70 0 chr9 43709889 43710102 -74152525 - MER45C DNA AcHobo -721 232 5 795 338 11 3 chr9 43710461 43710745 -74151882 + MLT2E LTR ERVL 93 378 -250 471 255 12 19 chr9 43710776 43710937 -74151690 + MLT2E LTR ERVL 469 628 0 1197 269 11 4 chr9 43711826 43712290 -74150337 - L1M4 LINE L1 -2536 3610 3144 33 0 0 0 chr9 43712364 43712397 -74150230 + AT_rich Low_complexity Low_complexity 1 33 0 2040 263 65 93 chr9 43712843 43714142 -74148485 + L1MCc LINE L1 11 1273 -5150 24 85 0 0 chr9 43714798 43714857 -74147770 + AT_rich Low_complexity Low_complexity 1 59 0 2325 97 13 0 chr9 43715898 43716207 -74146420 + AluSq SINE Alu 1 313 0 361 285 167 11 chr9 43716215 43716401 -74146226 + L1MCc LINE L1 2056 2270 -4852 363 345 32 18 chr9 43716408 43716628 -74145999 + L1MCc LINE L1 2321 2543 -4579 22 0 0 0 chr9 43716658 43716680 -74145947 + AT_rich Low_complexity Low_complexity 1 22 0 381 298 98 58 chr9 43717034 43717681 -74144946 + L1MCc LINE L1 3041 3661 -3280 2483 48 3 6 chr9 43717681 43717992 -74144635 + AluY SINE Alu 1 310 -1 381 298 98 58 chr9 43717992 43718044 -74144583 + L1MCc LINE L1 3661 3709 -3232 1082 147 25 0 chr9 43718044 43718242 -74144385 + L1PB3 LINE L1 5942 6144 -10 381 298 98 58 chr9 43718242 43719692 -74142935 + L1MCc LINE L1 3709 5277 -1664 5778 144 6 24 chr9 43720221 43721364 -74141263 - L1PB1 LINE L1 -6 6145 4983 210 71 0 0 chr9 43721364 43721392 -74141235 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 5778 144 6 24 chr9 43721392 43721408 -74141219 - L1PB1 LINE L1 -1168 4983 4968 1796 139 15 7 chr9 43721408 43721682 -74140945 - AluSx SINE Alu -36 276 1 5778 144 6 24 chr9 43721682 43721883 -74140744 - L1PB1 LINE L1 -1183 4968 4815 410 273 8 30 chr9 43722026 43722158 -74140469 + L1M4 LINE L1 2673 2801 -3345 1672 62 0 0 chr9 43722607 43722801 -74139826 - AluY SINE Alu -116 195 2 661 95 0 0 chr9 43722802 43722897 -74139730 + AluY SINE Alu 215 309 -2 2000 119 3 17 chr9 43724214 43724509 -74138118 + AluSg SINE Alu 1 291 -19 1204 287 21 9 chr9 43725392 43725726 -74136901 - MLT1E2 LTR MaLR -66 560 223 5216 139 1 15 chr9 43725752 43727365 -74135262 - L1PA15 LINE L1 0 6165 4550 9288 221 11 39 chr9 43727366 43728603 -74134024 - L1PA15 LINE L1 -2171 3975 2844 3109 52 0 0 chr9 43728603 43728988 -74133639 - L1PA3 LINE L1 0 6155 5771 9288 221 11 39 chr9 43728988 43730268 -74132359 - L1PA15 LINE L1 -3302 2844 1529 5587 215 27 31 chr9 43730273 43731392 -74131235 + L1PA12 LINE L1 1543 2657 -4924 1955 146 50 14 chr9 43731392 43731754 -74130873 - THE1C LTR MaLR 0 375 1 5587 215 27 31 chr9 43731754 43731971 -74130656 + L1PA12 LINE L1 2657 2873 -4708 417 191 101 96 chr9 43731971 43732149 -74130478 - MLT1E1 LTR MaLR -397 257 1 5907 174 58 2 chr9 43733340 43734482 -74128145 - Tigger3b DNA MER2_type -25 1206 1 1079 194 132 32 chr9 43735549 43735876 -74126751 + MLT1A1 LTR MaLR 5 365 0 25 51 0 0 chr9 43736127 43736166 -74126461 + AT_rich Low_complexity Low_complexity 1 39 0 1789 156 46 48 chr9 43736302 43736674 -74125953 + THE1C LTR MaLR 4 374 -1 217 208 52 0 chr9 43736852 43736929 -74125698 + (TATATG)n Simple_repeat Simple_repeat 4 84 0 2302 36 0 7 chr9 43738760 43739036 -74123591 - AluY SINE Alu -12 299 26 789 239 66 30 chr9 43739115 43739420 -74123207 - L1MCa LINE L1 -3950 2476 2161 1471 225 48 22 chr9 43739455 43739811 -74122816 + MLT1A1 LTR MaLR 1 365 0 1363 192 35 61 chr9 43739883 43740182 -74122445 - L1MCa LINE L1 -4421 2005 1700 1840 110 8 12 chr9 43740182 43740437 -74122190 + AluY SINE Alu 3 256 -55 1363 192 35 61 chr9 43740437 43740815 -74121812 - L1MCa LINE L1 -4726 1700 1259 233 104 62 0 chr9 43740841 43740889 -74121738 + A-rich Low_complexity Low_complexity 3 53 0 366 156 0 0 chr9 43741132 43741196 -74121431 + (TA)n Simple_repeat Simple_repeat 1 64 0 2531 166 22 41 chr9 43741512 43742064 -74120563 + L1MC2 LINE L1 5647 6186 -158 22 35 0 0 chr9 43742072 43742101 -74120526 + AT_rich Low_complexity Low_complexity 1 29 0 1213 258 127 19 chr9 43742697 43743116 -74119511 + MLT1C LTR MaLR 4 467 0 254 335 68 12 chr9 43743153 43743314 -74119313 + L2 LINE L2 3104 3273 -40 357 339 8 0 chr9 43743825 43743946 -74118681 - LTR33 LTR ERVL -323 198 77 2436 196 37 33 chr9 43744506 43745079 -74117548 + Tigger3b DNA MER2_type 1 575 -656 260 178 14 0 chr9 43745593 43745666 -74116961 + (TG)n Simple_repeat Simple_repeat 2 75 0 507 263 100 0 chr9 43746729 43746889 -74115738 - MER67D LTR ERV1 -114 400 225 32 0 0 0 chr9 43746900 43746932 -74115695 + AT_rich Low_complexity Low_complexity 1 32 0 1988 130 3 3 chr9 43747164 43747471 -74115156 + AluSx SINE Alu 1 307 -5 21 0 0 0 chr9 43747733 43747754 -74114873 + AT_rich Low_complexity Low_complexity 1 21 0 2295 167 20 18 chr9 43748392 43748834 -74113793 - L1MA5 LINE L1 -236 6064 5622 211 176 0 78 chr9 43749235 43749286 -74113341 + L2 LINE L2 3267 3313 0 285 241 84 0 chr9 43749830 43749932 -74112695 + HsTC2 DNA Tc2 615 1896 -2 22 70 0 0 chr9 43750191 43750234 -74112393 + AT_rich Low_complexity Low_complexity 1 43 0 387 319 49 32 chr9 43751210 43751395 -74111232 + MIR3 SINE MIR 5 192 -16 235 64 21 21 chr9 43752763 43752810 -74109817 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 643 243 14 0 chr9 43754154 43754302 -74108325 + MIR SINE MIR 113 262 0 560 302 138 9 chr9 43754408 43754633 -74107994 + MIR SINE MIR 1 254 -8 183 376 43 11 chr9 43755303 43755396 -74107231 + MER5A DNA MER1_type 72 167 -22 23 78 0 0 chr9 43756560 43756611 -74106016 + AT_rich Low_complexity Low_complexity 1 51 0 1983 109 7 0 chr9 43758733 43759007 -74103620 - AluSx SINE Alu -20 292 17 2427 77 0 13 chr9 43759143 43759456 -74103171 - AluSg1 SINE Alu 0 309 1 288 175 0 0 chr9 43759577 43759640 -74102987 + (TG)n Simple_repeat Simple_repeat 1 63 0 1929 136 7 3 chr9 43761477 43761786 -74100841 - AluSx SINE Alu 0 312 3 37 0 0 0 chr9 43762015 43762052 -74100575 + AT_rich Low_complexity Low_complexity 1 37 0 507 263 100 0 chr9 43762063 43762223 -74100404 + MER67D LTR ERV1 225 400 -114 281 164 14 0 chr9 43763291 43763364 -74099263 + (CA)n Simple_repeat Simple_repeat 2 75 0 354 331 85 36 chr9 43764985 43765348 -74097279 + L2 LINE L2 2460 2840 -474 2314 93 0 29 chr9 43765475 43765787 -74096840 - AluY SINE Alu -8 303 1 24 77 0 0 chr9 43765895 43765947 -74096680 + AT_rich Low_complexity Low_complexity 1 52 0 23 0 0 0 chr9 43766514 43766537 -74096090 + AT_rich Low_complexity Low_complexity 1 23 0 230 233 0 0 chr9 43766564 43766607 -74096020 + (CA)n Simple_repeat Simple_repeat 2 44 0 6048 122 21 27 chr9 43767200 43768173 -74094454 - LTR5 LTR ERVK -2 967 1 338 283 66 30 chr9 43768763 43768929 -74093698 + L1MCc LINE L1 17 188 -6235 1290 209 7 54 chr9 43769131 43769427 -74093200 - AluJo SINE Alu -30 282 1 251 253 126 11 chr9 43769469 43769556 -74093071 - Charlie7 DNA MER1_type -2511 101 5 1316 174 69 43 chr9 43770168 43770470 -74092157 - MSTB LTR MaLR 0 426 117 942 144 195 15 chr9 43770470 43770567 -74092060 - MER30 DNA MER1_type 0 230 152 270 56 0 0 chr9 43770567 43770603 -74092024 + (TG)n Simple_repeat Simple_repeat 1 36 0 219 103 0 0 chr9 43770604 43770643 -74091984 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 942 144 195 15 chr9 43770643 43770738 -74091889 - MER30 DNA MER1_type -77 153 1 832 130 16 0 chr9 43770738 43770860 -74091767 - MSTB LTR MaLR -302 124 1 386 298 79 53 chr9 43770885 43771150 -74091477 - L1ME LINE L1 -547 5623 5352 26 64 0 0 chr9 43771283 43771330 -74091297 + AT_rich Low_complexity Low_complexity 1 47 0 1384 285 40 7 chr9 43771504 43771908 -74090719 + MER70A LTR ERVL 4 420 -52 3251 130 20 0 chr9 43772646 43773176 -74089451 + L1PB2 LINE L1 5609 6147 -4 21 57 0 0 chr9 43774858 43774893 -74087734 + AT_rich Low_complexity Low_complexity 1 35 0 1573 158 3 40 chr9 43774893 43775196 -74087431 - AluJo SINE Alu -20 292 1 189 0 0 0 chr9 43775837 43775858 -74086769 + (TG)n Simple_repeat Simple_repeat 2 22 0 251 308 0 44 chr9 43776050 43776141 -74086486 - MIR SINE MIR -20 242 156 471 123 0 0 chr9 43776142 43776223 -74086404 + (CA)n Simple_repeat Simple_repeat 2 82 0 406 159 307 0 chr9 43776299 43776387 -74086240 + FLAM_C SINE Alu 12 126 -17 810 281 105 23 chr9 43776630 43777029 -74085598 - MLT1K LTR MaLR -2 586 155 431 324 14 7 chr9 43777463 43777602 -74085025 + MIR3 SINE MIR 18 157 -51 1481 202 179 3 chr9 43777603 43777994 -74084633 - LTR46 LTR ERV1 0 460 1 314 330 28 0 chr9 43778036 43778142 -74084485 - L2 LINE L2 -24 3289 3181 2185 94 0 0 chr9 43778440 43778737 -74083890 - AluY SINE Alu -14 297 1 519 324 132 0 chr9 43778827 43779046 -74083581 + MIR SINE MIR 15 262 0 373 324 0 0 chr9 43779197 43779308 -74083319 + MIR SINE MIR 30 140 -122 1092 229 20 112 chr9 43779359 43779752 -74082875 - LTR16C LTR ERVL 0 491 135 221 57 29 0 chr9 43779844 43779879 -74082748 + (CA)n Simple_repeat Simple_repeat 2 37 0 237 314 70 19 chr9 43780100 43780252 -74082375 - MIR SINE MIR -54 208 45 653 128 2 2 chr9 43784486 43785164 -74077463 + HSAT5 Satellite Satellite 1 678 -1 241 202 36 36 chr9 43785195 43785279 -74077348 + HSAT5 Satellite Satellite 1 84 -2 351 214 0 67 chr9 43785339 43785428 -74077199 + HSAT5 Satellite Satellite 1 83 -3 349 145 29 14 chr9 43785702 43785771 -74076856 + HSAT5 Satellite Satellite 9 78 -8 * 556 250 28 7 chr9 43785769 43785913 -74076714 - MSTA LTR MaLR -154 274 128 725 227 182 21 chr9 43785941 43786183 -74076444 + MST-int LTR MaLR 976 1256 -395 285 196 18 0 chr9 43786171 43786227 -74076400 - THE1-int LTR MaLR -613 967 911 * 342 216 78 39 chr9 43786312 43786414 -74076213 - MSTA LTR MaLR -322 106 1 1111 241 60 16 chr9 43786414 43786730 -74075897 - MSTA-int LTR MaLR -1 1650 1321 320 247 155 0 chr9 43786732 43786829 -74075798 - MSTA LTR MaLR -257 171 60 418 224 20 10 chr9 43786878 43786976 -74075651 - MSTA LTR MaLR -329 99 1 6109 224 61 34 chr9 43786976 43788557 -74074070 - MSTA-int LTR MaLR 0 1651 28 437 257 29 7 chr9 43788555 43788695 -74073932 + THE1-int LTR MaLR 466 608 -972 * 1029 211 109 8 chr9 43788731 43788997 -74073630 - MSTA LTR MaLR -60 368 76 848 184 197 29 chr9 43789001 43789245 -74073382 + THE1-int LTR MaLR 907 1191 -389 483 189 21 0 chr9 43789372 43789467 -74073160 - MSTA LTR MaLR -331 97 1 1384 208 6 40 chr9 43789467 43789813 -74072814 - MSTA-int LTR MaLR 0 1651 1318 299 266 43 32 chr9 43789820 43789914 -74072713 - MSTA LTR MaLR -269 159 65 437 175 25 0 chr9 43789964 43790044 -74072583 - MSTA LTR MaLR -331 97 16 5926 229 55 25 chr9 43790059 43791630 -74070997 - MSTA-int LTR MaLR 0 1651 34 458 286 26 26 chr9 43791632 43791786 -74070841 + THE1-int LTR MaLR 464 617 -963 1032 232 74 11 chr9 43791802 43792087 -74070540 - MSTA LTR MaLR -52 376 74 879 183 203 21 chr9 43792089 43792330 -74070297 + THE1-int LTR MaLR 907 1191 -389 239 211 18 18 chr9 43792318 43792375 -74070252 - THE1-int LTR MaLR -613 967 911 * 215 241 11 46 chr9 43792382 43792469 -74070158 + (CACCC)n Simple_repeat Simple_repeat 4 87 0 454 189 21 0 chr9 43792471 43792566 -74070061 - MSTA LTR MaLR -331 97 1 1355 188 40 46 chr9 43792566 43792895 -74069732 - MSTA-int LTR MaLR 0 1651 1325 425 189 104 9 chr9 43792896 43793002 -74069625 - MSTA LTR MaLR -253 175 60 446 204 20 10 chr9 43793051 43793149 -74069478 - MSTA LTR MaLR -329 99 1 626 155 17 9 chr9 43793149 43793265 -74069362 - MSTA-int LTR MaLR 0 1651 1535 * 4792 244 57 27 chr9 43793261 43794579 -74068048 - MSTA-int LTR MaLR -262 1389 32 473 241 156 0 chr9 43794582 43794723 -74067904 + MST-int LTR MaLR 508 670 -981 844 254 79 14 chr9 43794752 43795031 -74067596 - MSTA LTR MaLR -56 372 76 621 242 208 21 chr9 43795035 43795275 -74067352 + THE1-int LTR MaLR 907 1191 -389 256 185 19 19 chr9 43795263 43795317 -74067310 - THE1-int LTR MaLR -613 967 914 * 298 194 87 78 chr9 43795396 43795499 -74067128 - MSTB LTR MaLR -324 104 1 1270 222 30 42 chr9 43795499 43795832 -74066795 - MSTB-int LTR MaLR 0 1651 1323 324 267 109 0 chr9 43795837 43795938 -74066689 - MSTA LTR MaLR -257 171 60 451 227 21 0 chr9 43795988 43796085 -74066542 - MSTA LTR MaLR -329 99 1 6315 215 52 29 chr9 43796085 43797686 -74064941 - MSTA-int LTR MaLR 0 1651 15 430 182 36 13 chr9 43797789 43797902 -74064725 + MST-int LTR MaLR 506 661 -963 1078 199 89 21 chr9 43797918 43798209 -74064418 - MSTA LTR MaLR -52 376 66 760 229 169 50 chr9 43798213 43798492 -74064135 + THE1-int LTR MaLR 907 1218 -362 271 214 18 0 chr9 43798445 43798501 -74064126 - THE1-int LTR MaLR -613 967 911 * 485 198 10 0 chr9 43798597 43798693 -74063934 - MSTA LTR MaLR -331 97 1 1439 211 6 46 chr9 43798695 43799041 -74063586 - MSTA-int LTR MaLR -2 1649 1318 358 206 59 0 chr9 43799045 43799113 -74063514 - MSTA LTR MaLR -262 166 95 449 196 9 37 chr9 43799208 43799315 -74063312 - MSTA LTR MaLR -324 104 1 2388 209 9 39 chr9 43799316 43799877 -74062750 - MSTA-int LTR MaLR -1 1650 1107 2391 249 53 5 chr9 43799883 43800522 -74062105 - MSTA-int LTR MaLR -955 696 27 472 219 156 10 chr9 43800519 43800670 -74061957 + MST-int LTR MaLR 466 661 -963 * 1215 227 59 7 chr9 43800686 43800972 -74061655 - MSTA LTR MaLR -52 376 76 828 212 203 21 chr9 43800976 43801217 -74061410 + THE1-int LTR MaLR 907 1191 -389 259 188 94 82 chr9 43801176 43801261 -74061366 - MSTA-int LTR MaLR -584 996 911 * 447 236 0 0 chr9 43801380 43801486 -74061141 - MSTA-int LTR MaLR -1518 133 28 436 222 152 1 chr9 43801483 43801634 -74060993 + MST-int LTR MaLR 465 657 -959 * 1492 230 32 27 chr9 43801649 43802023 -74060604 - MSTA LTR MaLR -52 376 1 1175 178 37 12 chr9 43802023 43802265 -74060362 - MSTA-int LTR MaLR 0 1651 1404 1320 177 16 0 chr9 43802268 43802511 -74060116 - MSTA-int LTR MaLR -1404 247 1 1446 244 57 3 chr9 43802528 43802877 -74059750 - MSTA LTR MaLR -60 368 1 1948 117 87 46 chr9 43804832 43805269 -74057358 + SN5 Other centromeric 1 455 0 213 196 0 0 chr9 43805511 43805557 -74057070 + (TG)n Simple_repeat Simple_repeat 2 47 0 248 200 24 35 chr9 43805967 43806052 -74056575 + HSAT5 Satellite Satellite 1 84 -2 292 205 13 26 chr9 43806063 43806141 -74056486 + HSAT5 Satellite Satellite 9 85 -1 305 229 27 26 chr9 43806337 43806483 -74056144 + HSAT5 Satellite Satellite 1 146 -1 757 243 22 0 chr9 43807069 43807250 -74055377 + L1MC4 LINE L1 6819 7003 -1039 871 194 48 7 chr9 43807293 43807507 -74055120 + L1MC4 LINE L1 7112 7362 -680 24 53 0 0 chr9 43807813 43807851 -74054776 + AT_rich Low_complexity Low_complexity 1 38 0 231 294 140 37 chr9 43808379 43808652 -74053975 - L2 LINE L2 -227 3045 2745 2125 122 0 0 chr9 43809466 43809761 -74052866 + AluSc SINE Alu 1 295 -14 4539 189 23 17 chr9 43809941 43811075 -74051552 - L1PA16 LINE L1 0 6166 5026 1888 147 17 0 chr9 43811111 43811410 -74051217 - AluSx SINE Alu -8 304 1 1708 134 27 27 chr9 43811588 43811887 -74050740 - AluSg1 SINE Alu -10 299 1 1915 148 0 0 chr9 43811915 43812206 -74050421 + AluSg SINE Alu 1 291 -19 398 230 10 0 chr9 43813161 43813261 -74049366 + L1MA9 LINE L1 6163 6263 -49 4576 42 0 4 chr9 43813559 43814112 -74048515 - L1PA4 LINE L1 -2 6153 5603 203 161 0 0 chr9 43814496 43814527 -74048100 + polypurine Low_complexity Low_complexity 2 32 0 1138 236 7 14 chr9 43816260 43816553 -74046074 + AluJo SINE Alu 6 296 -16 3054 209 29 11 chr9 43816666 43817780 -74044847 + L1MA5 LINE L1 4808 5941 -359 1039 229 31 8 chr9 43817788 43818046 -74044581 + AluJo SINE Alu 1 264 -48 1276 170 80 0 chr9 43818113 43818389 -74044238 + L1MA5 LINE L1 5997 6294 -6 702 320 87 22 chr9 43818425 43818804 -74043823 + MLT1G1 LTR MaLR 79 560 -35 2500 192 39 42 chr9 43820132 43821127 -74041500 + L1MB8 LINE L1 4766 5836 -342 2158 148 78 7 chr9 43821136 43821548 -74041079 + MER61C LTR ERV1 11 434 0 1204 201 84 28 chr9 43821548 43821871 -74040756 + L1MB8 LINE L1 5833 6173 -5 1329 206 96 30 chr9 43822101 43822465 -74040162 + MER4E LTR ERV1 1 388 -391 3259 126 22 0 chr9 43822561 43823053 -74039574 + L1PA10 LINE L1 5655 6157 -11 2004 148 20 0 chr9 43823435 43823739 -74038888 - AluSq SINE Alu -3 310 1 24 32 0 0 chr9 43824314 43824345 -74038282 + AT_rich Low_complexity Low_complexity 1 31 0 320 172 0 16 chr9 43824352 43824416 -74038211 - MER34C LTR ERV1 -100 485 423 1942 122 66 0 chr9 43824676 43824962 -74037665 + AluSg SINE Alu 1 305 -5 2233 114 3 3 chr9 43826151 43826459 -74036168 - AluSg SINE Alu -1 309 2 1922 154 7 0 chr9 43826808 43827100 -74035527 - AluSx SINE Alu -18 294 1 1441 160 0 48 chr9 43827519 43827787 -74034840 - AluJb SINE Alu -20 292 38 203 233 50 0 chr9 43827810 43827870 -74034757 + MIR SINE MIR 198 260 -2 1929 208 78 26 chr9 43828883 43829382 -74033245 + L1MB8 LINE L1 5653 6177 -1 410 302 54 13 chr9 43830450 43830599 -74032028 + L2 LINE L2 2722 2876 -438 1119 226 36 7 chr9 43831325 43831599 -74031028 - L1MB7 LINE L1 0 6184 5903 23 0 0 0 chr9 43833635 43833658 -74028969 + AT_rich Low_complexity Low_complexity 1 23 0 574 290 74 4 chr9 43834716 43834947 -74027680 - L1MB7 LINE L1 -479 5642 5396 2193 119 0 3 chr9 43835061 43835371 -74027256 + AluSq SINE Alu 1 309 -4 591 45 22 22 chr9 43837396 43837485 -74025142 - L1PA5 LINE L1 0 6154 6066 26 30 0 0 chr9 43839487 43839520 -74023107 + AT_rich Low_complexity Low_complexity 1 33 0 1465 231 30 0 chr9 43840221 43840519 -74022108 + AluJo SINE Alu 1 307 -5 206 225 0 0 chr9 43840740 43840780 -74021847 - L2 LINE L2 -12 3301 3262 1952 159 7 0 chr9 43841062 43841364 -74021263 - AluSx SINE Alu -8 304 1 2107 110 7 0 chr9 43841796 43842128 -74020499 - AluSp SINE Alu 0 334 1 2372 214 72 12 chr9 43843436 43844084 -74018543 - L1MD2 LINE L1 -226 6133 5447 600 329 108 67 chr9 43844292 43844969 -74017658 - L2 LINE L2 -340 2974 2270 205 222 56 0 chr9 43848290 43848344 -74014283 + (TATATG)n Simple_repeat Simple_repeat 1 57 0 382 211 19 0 chr9 43848366 43848470 -74014157 + (TA)n Simple_repeat Simple_repeat 1 106 0 269 318 167 0 chr9 43849077 43849203 -74013424 + MLT1H LTR MaLR 399 545 -4 393 353 75 44 chr9 43849339 43849821 -74012806 + L3 LINE CR1 338 834 -743 12630 37 3 0 chr9 43850297 43852609 -74010018 + L1PA4 LINE L1 3841 6155 0 1822 69 0 0 chr9 43854590 43854823 -74007804 - L1PA3 LINE L1 -59 6096 5864 22 80 0 0 chr9 43854962 43855012 -74007615 + AT_rich Low_complexity Low_complexity 1 50 0 1486 182 35 14 chr9 43855407 43855693 -74006934 + AluJo SINE Alu 1 292 -20 2059 158 61 18 chr9 43856596 43856989 -74005638 + MSTA LTR MaLR 19 428 0 2098 225 106 35 chr9 43856991 43857612 -74005015 + MSTA-int LTR MaLR 3 667 -913 2104 111 4 0 chr9 43857634 43857945 -74004682 - AluY SINE Alu 0 314 3 3428 85 12 26 chr9 43857953 43858447 -74004180 - LTR15 LTR ERV1 -6 487 1 4267 185 80 17 chr9 43858449 43859321 -74003306 + MSTA-int LTR MaLR 725 1651 0 2088 178 41 14 chr9 43859321 43859738 -74002889 + MSTA LTR MaLR 1 428 0 21 57 0 0 chr9 43859754 43859789 -74002838 + AT_rich Low_complexity Low_complexity 1 35 0 2071 191 26 28 chr9 43859982 43860444 -74002183 - MER65C LTR ERV1 0 461 1 324 184 80 112 chr9 43860449 43860574 -74002053 - MER65C-int LTR ERV1 -5 4866 4746 518 286 42 5 chr9 43860614 43860827 -74001800 - MER65-int LTR ERV1 -2776 2095 1875 5102 248 158 24 chr9 43860830 43862756 -73999871 + L1PA15-16 LINE L1 3 2226 -4623 2058 144 0 0 chr9 43862756 43863055 -73999572 - AluSx SINE Alu -13 299 1 5102 248 158 24 chr9 43863055 43863198 -73999429 + L1PA15-16 LINE L1 2226 2349 -4500 619 247 97 3 chr9 43863202 43863525 -73999102 - LTR34 LTR ERV1 -189 510 156 368 218 73 18 chr9 43863655 43863765 -73998862 - MER4C LTR ERV1 -346 119 4 1291 163 66 31 chr9 43863965 43864222 -73998405 + AluJo SINE Alu 1 266 -46 344 330 128 35 chr9 43864264 43864361 -73998266 + L1MC4a LINE L1 5542 5629 -2179 1877 132 0 4 chr9 43864361 43864648 -73997979 - AluSx SINE Alu 0 306 21 344 330 128 35 chr9 43864648 43864860 -73997767 + L1MC4a LINE L1 5629 5882 -1926 31 0 0 0 chr9 43865133 43865164 -73997463 + AT_rich Low_complexity Low_complexity 1 31 0 245 296 37 12 chr9 43865202 43865283 -73997344 + MIR SINE MIR 61 143 -65 22 0 0 0 chr9 43866734 43866756 -73995871 + AT_rich Low_complexity Low_complexity 1 22 0 922 81 0 0 chr9 43866756 43866879 -73995748 - L1MA3 LINE L1 0 6305 6183 1263 112 5 21 chr9 43866880 43867067 -73995560 - THE1C LTR MaLR -191 184 1 187 299 15 15 chr9 43870653 43870720 -73991907 - L2 LINE L2 -75 3238 3172 330 107 0 0 chr9 43871055 43871111 -73991516 + (TG)n Simple_repeat Simple_repeat 1 56 0 209 167 19 0 chr9 43871115 43871169 -73991458 + GA-rich Low_complexity Low_complexity 2 56 0 876 295 138 26 chr9 43871197 43871777 -73990850 - L2 LINE L2 -831 2483 1839 611 64 0 0 chr9 43871979 43872057 -73990570 + L1PA8 LINE L1 6077 6154 -18 351 0 0 0 chr9 43872057 43872096 -73990531 + (GA)n Simple_repeat Simple_repeat 2 40 0 1783 178 13 0 chr9 43872102 43872405 -73990222 + AluSx SINE Alu 1 307 -5 279 299 60 30 chr9 43872405 43872606 -73990021 + L1ME LINE L1 5453 5659 -505 364 197 28 44 chr9 43872704 43872811 -73989816 + L1MC4 LINE L1 1995 6984 -1338 320 208 73 52 chr9 43872740 43872836 -73989791 - L1MC3 LINE L1 -1139 6646 6549 * 696 156 47 0 chr9 43872817 43872933 -73989694 + (TA)n Simple_repeat Simple_repeat 1 110 -159 320 267 40 0 chr9 43872933 43873008 -73989619 - L1MCa LINE L1 -4354 2072 1995 304 236 56 0 chr9 43872983 43873055 -73989572 - L1MC3 LINE L1 -1139 6926 6851 * 696 156 47 0 chr9 43873008 43873074 -73989553 + (TA)n Simple_repeat Simple_repeat 110 269 0 334 256 47 0 chr9 43873019 43873105 -73989522 + L1MC4 LINE L1 6615 6704 -1338 * 2172 100 4 0 chr9 43873105 43873386 -73989241 - AluSq SINE Alu -31 282 1 222 319 14 0 chr9 43873440 43873509 -73989118 + L2 LINE L2 3242 3311 -2 1175 149 56 5 chr9 43874032 43874246 -73988381 - MER61E LTR ERV1 -4 565 341 230 209 0 104 chr9 43874330 43874397 -73988230 - MER61E LTR ERV1 -411 158 99 * 358 266 35 9 chr9 43874394 43874507 -73988120 - LTR25 LTR ERV1 -431 363 248 1977 125 11 0 chr9 43875086 43875358 -73987269 - AluSx SINE Alu -2 310 36 768 245 79 47 chr9 43875524 43875842 -73986785 + MER89-int LTR ERV1 1030 1357 -5444 1493 223 27 3 chr9 43875842 43876174 -73986453 + MLT1A1 LTR MaLR 1 340 -25 788 270 40 27 chr9 43876203 43876499 -73986128 + MER89-int LTR ERV1 1361 1660 -5141 2005 130 0 38 chr9 43877799 43877978 -73984649 - AluSg SINE Alu -7 303 140 1758 69 4 26 chr9 43877978 43878237 -73984390 - AluY SINE Alu 0 311 63 2005 130 0 38 chr9 43878237 43878372 -73984255 - AluSg SINE Alu -170 140 1 1532 192 173 16 chr9 43883578 43883948 -73978679 + MSTA LTR MaLR 1 428 0 1460 108 62 17 chr9 43887802 43892183 -73970444 - GSATII Satellite centromeric 0 4577 1 2578 150 10 14 chr9 43892186 43892678 -73969949 - TAR1 Satellite telomeric -105 2006 1517 1136 169 47 13 chr9 43892678 43893678 -73968949 - GSATII Satellite centromeric 0 1034 1 246 150 0 0 chr9 43893687 43893727 -73968900 + SUBTEL_sa Satellite Satellite 121 160 -14 7755 65 4 21 chr9 43893727 43894984 -73967643 + SST1 Satellite centromeric 1 1235 0 267 175 0 0 chr9 43895001 43895058 -73967569 + (TG)n Simple_repeat Simple_repeat 1 57 0 350 139 14 0 chr9 43895081 43895153 -73967474 + CT-rich Low_complexity Low_complexity 2 74 0 328 383 95 27 chr9 43895765 43896060 -73966567 - L1M2 LINE L1 -6526 323 9 401 285 107 52 chr9 43896072 43896469 -73966158 + L1M4 LINE L1 2869 3319 -2827 542 238 73 0 chr9 43896490 43896641 -73965986 - MER58B DNA MER1_type -16 325 164 296 327 40 36 chr9 43896731 43897226 -73965401 + L1M4 LINE L1 3369 3865 -2281 462 391 63 19 chr9 43897285 43897663 -73964964 + L1M4 LINE L1 3957 4351 -1795 1098 256 67 58 chr9 43898976 43899547 -73963080 - L1ME2 LINE L1 -134 6030 5455 1486 100 5 68 chr9 43899862 43900082 -73962545 + AluSp SINE Alu 1 206 -107 1114 249 95 37 chr9 43900187 43900786 -73961841 + L2 LINE L2 2480 3097 -216 1366 225 24 10 chr9 43900790 43901088 -73961539 - AluJo SINE Alu -10 302 1 1420 183 17 61 chr9 43901091 43901451 -73961176 - MLT1D LTR MaLR -2 503 160 567 215 0 37 chr9 43901467 43901602 -73961025 + FLAM_C SINE Alu 14 143 0 1523 214 7 13 chr9 43901604 43901907 -73960720 + AluJo SINE Alu 1 301 -11 2109 252 57 53 chr9 43902003 43902424 -73960203 + MER21B LTR ERV1 19 437 -426 1456 176 0 100 chr9 43902424 43902754 -73959873 - AluJb SINE Alu -14 298 2 2109 252 57 53 chr9 43902754 43902832 -73959795 + MER21B LTR ERV1 437 513 -350 1815 176 0 10 chr9 43902832 43903127 -73959500 + AluJo SINE Alu 9 300 -12 2109 252 57 53 chr9 43903127 43903411 -73959216 + MER21B LTR ERV1 513 806 -57 1274 189 39 45 chr9 43903610 43903943 -73958684 - MST-int LTR MaLR 0 1651 1321 381 198 109 0 chr9 43903945 43904046 -73958581 - MSTA LTR MaLR -257 171 60 414 204 20 10 chr9 43904095 43904193 -73958434 - MSTA LTR MaLR -329 99 1 590 155 17 9 chr9 43904193 43904309 -73958318 - MSTA-int LTR MaLR 0 1651 1535 * 4424 251 57 27 chr9 43904305 43905623 -73957004 - MSTA-int LTR MaLR -262 1389 32 443 241 156 0 chr9 43905626 43905767 -73956860 + MST-int LTR MaLR 508 670 -981 786 265 58 8 chr9 43905796 43906053 -73956574 - MSTA LTR MaLR -56 372 103 536 248 198 21 chr9 43906079 43906321 -73956306 + THE1-int LTR MaLR 907 1191 -389 237 185 19 19 chr9 43906309 43906363 -73956264 - THE1-int LTR MaLR -613 967 914 * 308 206 32 0 chr9 43906482 43906545 -73956082 - MSTA LTR MaLR -363 65 1 1220 219 30 42 chr9 43906545 43906878 -73955749 - MSTA-int LTR MaLR 0 1651 1323 283 289 78 0 chr9 43906883 43906973 -73955654 - MSTA LTR MaLR -257 171 75 421 227 21 0 chr9 43907034 43907131 -73955496 - MSTA LTR MaLR -329 99 1 5695 236 49 20 chr9 43907131 43908709 -73953918 - MSTA-int LTR MaLR 0 1651 28 519 199 153 10 chr9 43908704 43908858 -73953769 + MST-int LTR MaLR 463 661 -963 * 700 251 78 12 chr9 43908866 43909121 -73953506 - MSTA LTR MaLR -43 385 114 287 197 15 0 chr9 43909293 43909359 -73953268 - MSTA-int LTR MaLR -1549 102 36 313 225 196 7 chr9 43909365 43909503 -73953124 + MST-int LTR MaLR 507 670 -981 874 251 55 12 chr9 43909532 43909787 -73952840 - MSTA LTR MaLR -54 374 109 21 0 0 0 chr9 43910147 43910168 -73952459 + AT_rich Low_complexity Low_complexity 1 21 0 1855 177 0 0 chr9 43910421 43910721 -73951906 + AluSx SINE Alu 3 302 -10 356 335 46 31 chr9 43911307 43911501 -73951126 + L1ME2 LINE L1 5750 5946 -218 230 217 0 0 chr9 43911721 43911767 -73950860 + (CA)n Simple_repeat Simple_repeat 1 46 0 300 169 181 12 chr9 43913843 43913926 -73948701 + MER5A DNA MER1_type 10 106 -83 2412 83 0 0 chr9 43914802 43915104 -73947523 - AluY SINE Alu -9 302 1 1357 229 0 27 chr9 43915300 43915597 -73947030 - AluJo SINE Alu -23 289 1 1686 183 0 17 chr9 43915631 43915921 -73946706 + AluJb SINE Alu 3 287 -25 6446 49 1 0 chr9 43916298 43917074 -73945553 + L1PA5 LINE L1 5376 6152 -2 22 35 0 0 chr9 43917320 43917349 -73945278 + AT_rich Low_complexity Low_complexity 1 29 0 1220 205 35 56 chr9 43917441 43917729 -73944898 + AluJb SINE Alu 13 294 -18 1937 131 32 3 chr9 43917983 43918152 -73944475 - AluSx SINE Alu -19 293 111 290 44 0 22 chr9 43918152 43918197 -73944430 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1937 131 32 3 chr9 43918197 43918310 -73944317 - AluSx SINE Alu -201 111 3 634 194 0 0 chr9 43918567 43918665 -73943962 - FLAM_A SINE Alu -43 99 2 196 307 134 24 chr9 43920992 43921119 -73941508 + MIR SINE MIR 19 159 -49 222 336 93 44 chr9 43921724 43921950 -73940677 + MIR SINE MIR 20 256 -6 655 219 0 24 chr9 43922106 43922229 -73940398 + FLAM_A SINE Alu 6 125 -17 180 97 0 0 chr9 43922262 43922293 -73940334 + (TTTTTG)n Simple_repeat Simple_repeat 4 34 0 661 135 51 39 chr9 43922676 43922832 -73939795 - MER21A LTR ERV1 -29 902 745 793 141 44 7 chr9 43922836 43922971 -73939656 + Tigger7 DNA MER2_type 2448 2587 0 2451 157 0 39 chr9 43923988 43924446 -73938181 + L1MC1 LINE L1 5894 6333 0 2078 133 0 0 chr9 43924455 43924749 -73937878 + AluSx SINE Alu 1 294 -18 315 0 0 0 chr9 43924792 43924827 -73937800 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 2009 149 7 3 chr9 43924827 43925136 -73937491 + AluSq SINE Alu 1 310 -3 33 0 0 0 chr9 43925255 43925288 -73937339 + AT_rich Low_complexity Low_complexity 1 33 0 21 57 0 0 chr9 43925627 43925662 -73936965 + AT_rich Low_complexity Low_complexity 1 35 0 2515 190 48 9 chr9 43925695 43926236 -73936391 + MER68 LTR ERV1 1 562 0 1311 206 0 71 chr9 43926601 43926927 -73935700 + AluJb SINE Alu 1 303 -9 892 173 0 0 chr9 43926962 43927101 -73935526 + FAM SINE Alu 22 160 -25 237 291 0 0 chr9 43927403 43927458 -73935169 + (TG)n Simple_repeat Simple_repeat 2 56 0 1957 183 40 12 chr9 43927711 43928133 -73934494 + Tigger2a DNA MER2_type 1 434 0 22 0 0 0 chr9 43928403 43928425 -73934202 + AT_rich Low_complexity Low_complexity 1 22 0 210 294 101 18 chr9 43928956 43929065 -73933562 + MIR SINE MIR 86 203 -59 541 226 0 0 chr9 43929740 43929846 -73932781 - U6 snRNA snRNA -1 106 1 637 177 0 0 chr9 43930809 43930922 -73931705 + FLAM_C SINE Alu 31 143 0 204 125 0 0 chr9 43931757 43931789 -73930838 + (CAA)n Simple_repeat Simple_repeat 2 33 0 2275 103 0 0 chr9 43931839 43932131 -73930496 + AluSc SINE Alu 2 293 -16 21 0 0 0 chr9 43933576 43933597 -73929030 + AT_rich Low_complexity Low_complexity 1 21 0 418 264 61 19 chr9 43933977 43934212 -73928415 - MER102a DNA MER1_type -1 329 81 356 200 322 11 chr9 43935143 43935233 -73927394 - FLAM_A SINE Alu -15 118 1 265 261 90 54 chr9 43935258 43935369 -73927258 + MER5A DNA MER1_type 75 189 0 21 36 0 0 chr9 43936101 43936129 -73926498 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr9 43936231 43936260 -73926367 + AT_rich Low_complexity Low_complexity 1 29 0 565 269 145 45 chr9 43937029 43937257 -73925370 + MIR SINE MIR 4 251 -11 1534 176 42 7 chr9 43937261 43937545 -73925082 - AluJo SINE Alu -18 294 1 518 238 13 40 chr9 43937646 43937797 -73924830 + MER104 DNA Tc2 34 180 0 184 291 18 0 chr9 43938253 43938308 -73924319 + L2 LINE L2 3216 3271 -1 276 148 57 23 chr9 43939352 43939440 -73923187 + (TA)n Simple_repeat Simple_repeat 2 92 0 815 74 0 0 chr9 43939452 43939560 -73923067 + AluSq/x SINE Alu 1 108 -204 297 284 17 9 chr9 43939874 43939990 -73922637 + L1ME3A LINE L1 4905 5021 -1125 497 307 122 27 chr9 43940196 43940607 -73922020 + L1ME3A LINE L1 5499 5948 -222 31 26 0 0 chr9 43942579 43942617 -73920010 + AT_rich Low_complexity Low_complexity 1 38 0 2314 59 7 10 chr9 43943872 43944176 -73918451 - AluY SINE Alu -7 304 2 438 115 0 53 chr9 43944394 43944507 -73918120 + (TTCCC)n Simple_repeat Simple_repeat 2 108 0 573 202 0 0 chr9 43944696 43944800 -73917827 - AluJb SINE Alu -14 298 195 862 241 103 103 chr9 43944906 43945224 -73917403 - MLT1D LTR MaLR 0 505 185 2050 128 3 10 chr9 43945224 43945530 -73917097 + AluSx SINE Alu 1 304 -8 862 241 103 103 chr9 43945530 43945714 -73916913 - MLT1D LTR MaLR -319 186 3 63 51 0 0 chr9 43946303 43946401 -73916226 + AT_rich Low_complexity Low_complexity 1 98 0 265 182 20 40 chr9 43946529 43946628 -73915999 + (TTATA)n Simple_repeat Simple_repeat 2 98 0 337 315 22 62 chr9 43946628 43946806 -73915821 - MIR SINE MIR -90 172 2 3395 266 54 26 chr9 43946811 43947269 -73915358 - L1ME1 LINE L1 -239 5996 5552 2220 114 3 0 chr9 43947269 43947575 -73915052 - AluSq SINE Alu -6 307 1 1594 169 3 60 chr9 43947577 43947891 -73914736 - AluJo SINE Alu -16 296 1 3395 266 54 26 chr9 43947891 43949308 -73913319 - L1ME1 LINE L1 -683 5552 4064 1008 207 54 86 chr9 43949317 43949439 -73913188 - L1ME1 LINE L1 -4044 2352 2228 2265 102 0 3 chr9 43949439 43949744 -73912883 - AluSg SINE Alu 0 310 7 1008 207 54 86 chr9 43949744 43949797 -73912830 - L1ME1 LINE L1 -4168 2228 2175 2627 170 27 47 chr9 43949797 43950349 -73912278 + MER34 LTR ERV1 1 541 -1 1008 207 54 86 chr9 43950349 43950675 -73911952 - L1ME1 LINE L1 -4221 2175 1866 2134 128 3 0 chr9 43950696 43951002 -73911625 - AluSc SINE Alu 0 309 3 721 236 69 6 chr9 43951021 43951195 -73911432 - MER58A DNA MER1_type -38 186 2 1071 306 28 0 chr9 43951229 43951627 -73911000 - L1ME1 LINE L1 -4568 1828 1420 2413 181 18 20 chr9 43951645 43952137 -73910490 + L1P LINE L1 4076 4566 -1580 22 0 0 0 chr9 43952211 43952233 -73910394 + AT_rich Low_complexity Low_complexity 1 22 0 397 329 57 52 chr9 43952269 43952670 -73909957 - HAL1 LINE L1 -868 1639 1237 310 331 81 39 chr9 43952692 43953024 -73909603 - HAL1 LINE L1 -1313 1194 849 2142 121 48 22 chr9 43953445 43953800 -73908827 + THE1B LTR MaLR 1 364 0 9192 113 11 0 chr9 43953800 43955096 -73907531 + THE1B-int LTR MaLR 1 1310 -270 1397 269 78 63 chr9 43955096 43955547 -73907080 + L1ME2 LINE L1 4157 4600 -1564 2093 122 0 26 chr9 43955547 43955858 -73906769 + AluY SINE Alu 1 303 -8 1397 269 78 63 chr9 43955858 43956777 -73905850 + L1ME2 LINE L1 4600 5565 -599 2048 98 0 60 chr9 43956777 43957092 -73905535 + AluY SINE Alu 1 296 -15 1397 269 78 63 chr9 43957092 43957508 -73905119 + L1ME2 LINE L1 5565 5973 -191 828 174 0 0 chr9 43957513 43957651 -73904976 + AluSg/x SINE Alu 161 298 -14 2198 113 0 0 chr9 43957919 43958219 -73904408 + AluY SINE Alu 1 300 -11 203 394 94 25 chr9 43959067 43959227 -73903400 - L2 LINE L2 0 3272 3102 185 108 27 0 chr9 43959446 43959483 -73903144 + CT-rich Low_complexity Low_complexity 2 39 0 212 86 29 0 chr9 43959486 43959521 -73903106 + (TA)n Simple_repeat Simple_repeat 1 36 0 30 45 0 0 chr9 43959537 43959581 -73903046 + AT_rich Low_complexity Low_complexity 1 44 0 1763 142 40 20 chr9 43959976 43960279 -73902348 + AluSg1 SINE Alu 1 309 0 2126 128 0 3 chr9 43961470 43961783 -73900844 - AluSq SINE Alu -1 312 1 2273 133 20 145 chr9 43962368 43962878 -73899749 + MER4E LTR ERV1 305 750 -29 1429 165 134 0 chr9 43963364 43963625 -73899002 + AluJb SINE Alu 2 297 -5 2031 174 29 84 chr9 43965301 43965712 -73896915 - L1PB4 LINE L1 -3 6153 5776 5265 88 0 4 chr9 43965712 43966425 -73896202 - L1PA7 LINE L1 -7 6147 5438 2031 174 29 84 chr9 43966425 43966535 -73896092 - L1PB4 LINE L1 -380 5776 5661 683 344 122 20 chr9 43966898 43967455 -73895172 - L2 LINE L2 -25 3288 2670 306 0 0 0 chr9 43968159 43968193 -73894434 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 24 0 0 0 chr9 43970115 43970139 -73892488 + AT_rich Low_complexity Low_complexity 1 24 0 29 0 0 0 chr9 43970294 43970323 -73892304 + AT_rich Low_complexity Low_complexity 1 29 0 1229 182 39 9 chr9 43970514 43970745 -73891882 + AluJo SINE Alu 21 258 -54 258 136 0 0 chr9 43970748 43970792 -73891835 + (A)n Simple_repeat Simple_repeat 1 44 0 594 260 0 0 chr9 43970963 43971086 -73891541 + FLAM_A SINE Alu 2 124 -9 2976 189 32 8 chr9 43971242 43971831 -73890796 - MER6A DNA MER2_type -1 604 2 201 218 0 58 chr9 43972368 43972455 -73890172 + A-rich Low_complexity Low_complexity 4 85 0 22 0 0 0 chr9 43974053 43974075 -73888552 + AT_rich Low_complexity Low_complexity 1 22 0 3035 175 73 17 chr9 43974118 43974257 -73888370 - L1MA6 LINE L1 -365 5935 5805 565 14 27 0 chr9 43974257 43974331 -73888296 + (TAGA)n Simple_repeat Simple_repeat 3 78 0 3035 175 73 17 chr9 43974331 43974912 -73887715 - L1MA6 LINE L1 -495 5805 5183 22 0 0 0 chr9 43975515 43975537 -73887090 + AT_rich Low_complexity Low_complexity 1 22 0 326 314 0 0 chr9 43975541 43975643 -73886984 + MER103 DNA DNA 26 127 -39 235 304 108 23 chr9 43976015 43976229 -73886398 - L1MEd LINE L1 -4862 1257 1026 379 296 32 0 chr9 43976532 43976657 -73885970 - MIR SINE MIR -67 195 67 422 236 82 127 chr9 43977263 43977640 -73884987 - MER57B LTR ERV1 -2 401 42 303 311 57 6 chr9 43978081 43978258 -73884369 - L1MEd LINE L1 -4969 1150 965 261 208 0 0 chr9 43978260 43978308 -73884319 + MER58B DNA MER1_type 279 326 -15 266 254 9 53 chr9 43978385 43978499 -73884128 - L1MEd LINE L1 -5554 565 457 2606 32 0 10 chr9 43978654 43978964 -73883663 + AluY SINE Alu 1 307 -4 306 350 62 0 chr9 43979030 43979190 -73883437 - L1MEd LINE L1 -5943 176 7 315 335 18 6 chr9 43980440 43980610 -73882017 + MER5B DNA MER1_type 4 175 -3 4377 137 8 3 chr9 43980615 43981324 -73881303 + L1PA13 LINE L1 5451 6163 0 1129 222 118 12 chr9 43982638 43982976 -73879651 - MLT1A2 LTR MaLR 0 374 1 388 64 51 13 chr9 43982977 43983055 -73879572 + (TA)n Simple_repeat Simple_repeat 1 81 0 320 209 93 0 chr9 43983056 43983142 -73879485 - L1MC4 LINE L1 -1337 6705 6612 1795 190 18 0 chr9 43983192 43983518 -73879109 + Tigger1 DNA MER2_type 2 333 -2085 1399 161 13 67 chr9 43983576 43983874 -73878753 + AluJo SINE Alu 1 282 -30 1602 263 53 71 chr9 43984372 43984980 -73877647 - MER77 LTR ERV1 0 605 9 986 306 63 11 chr9 43985134 43985595 -73877032 - L1ME3A LINE L1 -171 5999 5515 524 278 75 63 chr9 43985780 43986111 -73876516 - LTR68 LTR ERV1 -292 448 114 733 366 149 0 chr9 43986126 43986577 -73876050 - MER69 DNA AcHobo -2008 518 1 333 303 57 100 chr9 43986578 43986984 -73875643 - L1ME LINE L1 -265 5856 5460 25 0 0 0 chr9 43987525 43987550 -73875077 + AT_rich Low_complexity Low_complexity 1 25 0 315 85 0 0 chr9 43989056 43989103 -73873524 + (TATG)n Simple_repeat Simple_repeat 2 48 0 2028 117 3 0 chr9 43989103 43989385 -73873242 - AluSg SINE Alu -27 283 1 233 233 50 0 chr9 43989743 43989803 -73872824 - MLT1J1 LTR MaLR -315 131 69 262 255 67 40 chr9 43989986 43990135 -73872492 + L1ME LINE L1 5522 5674 -492 35 0 0 0 chr9 43991033 43991068 -73871559 + AT_rich Low_complexity Low_complexity 1 35 0 1958 110 25 7 chr9 43991666 43991948 -73870679 + AluSx SINE Alu 5 291 -21 32 26 0 0 chr9 43993301 43993340 -73869287 + AT_rich Low_complexity Low_complexity 1 39 0 33 25 0 0 chr9 43993473 43993513 -73869114 + AT_rich Low_complexity Low_complexity 1 40 0 741 326 115 40 chr9 43993525 43994436 -73868191 + L2 LINE L2 2329 3312 -1 200 242 16 16 chr9 43994559 43994621 -73868006 + (TATATG)n Simple_repeat Simple_repeat 3 64 0 32 81 0 0 chr9 43995271 43995345 -73867282 + AT_rich Low_complexity Low_complexity 1 74 0 289 274 176 0 chr9 43995723 43995825 -73866802 + MIR3 SINE MIR 83 202 -6 23 0 0 0 chr9 43996675 43996698 -73865929 + AT_rich Low_complexity Low_complexity 1 23 0 312 313 42 72 chr9 43997606 43997696 -73864931 + Charlie2 DNA MER1_type 2 93 -2769 1594 258 59 35 chr9 43997696 43998203 -73864424 - LTR40a LTR ERVL 0 519 1 312 313 42 72 chr9 43998203 43998377 -73864250 + Charlie2 DNA MER1_type 93 258 -2604 229 250 0 0 chr9 43998547 43998599 -73864028 + LTR30 LTR ERV1 1 52 -670 519 117 56 145 chr9 43998603 43998782 -73863845 + LTR12 LTR ERV1 123 285 -429 226 227 0 40 chr9 43998783 43998858 -73863769 + LTR30 LTR ERV1 553 624 -98 517 143 59 76 chr9 43998858 43998977 -73863650 + LTR12 LTR ERV1 362 478 -236 437 315 41 6 chr9 43998981 43999184 -73863443 - MIR SINE MIR -27 235 27 834 201 44 84 chr9 43999288 43999537 -73863090 - MER8 DNA MER2_type 0 239 1 339 265 95 42 chr9 44000136 44000455 -73862172 + MLT1J2 LTR MaLR 40 450 0 603 286 80 50 chr9 44000534 44000897 -73861730 + MLT1I LTR MaLR 2 375 -34 700 286 19 19 chr9 44002580 44002793 -73859834 - MER58A DNA MER1_type -10 214 2 29 0 0 0 chr9 44002914 44002943 -73859684 + AT_rich Low_complexity Low_complexity 1 29 0 2148 98 3 13 chr9 44003282 44003589 -73859038 - AluY SINE Alu -7 304 1 384 218 0 0 chr9 44003705 44003792 -73858835 + (TATATG)n Simple_repeat Simple_repeat 3 89 0 339 216 9 18 chr9 44003792 44003901 -73858726 + L1MC4 LINE L1 2006 6983 -1339 311 333 0 0 chr9 44003821 44003911 -73858716 - L1MC4 LINE L1 -1339 6703 6614 * 240 184 0 0 chr9 44003911 44003960 -73858667 + (TA)n Simple_repeat Simple_repeat 2 50 0 327 344 50 28 chr9 44004052 44004270 -73858357 + L2 LINE L2 1564 1786 -1528 411 232 9 176 chr9 44004280 44004317 -73858310 - L1M4 LINE L1 -2022 4124 4082 1387 227 42 51 chr9 44004317 44004823 -73857804 + MLT1D LTR MaLR 1 501 -4 411 232 9 176 chr9 44004823 44005108 -73857519 - L1M4 LINE L1 -2064 4082 3856 250 336 23 16 chr9 44005482 44005610 -73857017 - L1MEc LINE L1 -5980 281 153 245 313 90 8 chr9 44005731 44005865 -73856762 - L1MEc LINE L1 -5923 147 3 196 281 29 151 chr9 44006404 44006508 -73856119 + L2 LINE L2 2476 2591 -723 1162 259 19 35 chr9 44006508 44006879 -73855748 - MLT1A1 LTR MaLR 0 365 1 196 281 29 151 chr9 44006879 44006922 -73855705 + L2 LINE L2 2591 2587 -727 11406 32 0 0 chr9 44006922 44009050 -73853577 - L1PA3 LINE L1 0 6155 4028 196 281 29 151 chr9 44009050 44009139 -73853488 + L2 LINE L2 2586 2684 -630 1557 201 160 9 chr9 44009140 44009545 -73853082 - MER31B LTR ERV1 0 543 1 501 283 102 54 chr9 44009606 44010048 -73852579 - L1M4 LINE L1 -3574 2572 2110 23 0 0 0 chr9 44010060 44010083 -73852544 + AT_rich Low_complexity Low_complexity 1 23 0 30 27 0 0 chr9 44010160 44010197 -73852430 + AT_rich Low_complexity Low_complexity 1 37 0 33 0 0 0 chr9 44010791 44010824 -73851803 + AT_rich Low_complexity Low_complexity 1 33 0 24 53 0 0 chr9 44010993 44011031 -73851596 + AT_rich Low_complexity Low_complexity 1 38 0 489 39 13 26 chr9 44011391 44011469 -73851158 + (TAGA)n Simple_repeat Simple_repeat 2 78 0 1888 142 3 14 chr9 44011661 44011956 -73850671 + AluSq SINE Alu 1 292 -21 183 333 51 0 chr9 44012383 44012461 -73850166 + MIR SINE MIR 76 157 -105 30 69 0 0 chr9 44013201 44013259 -73849368 + AT_rich Low_complexity Low_complexity 1 58 0 195 259 74 0 chr9 44014511 44014565 -73848062 - L2 LINE L2 -5 3308 3251 690 153 22 7 chr9 44014611 44014748 -73847879 + L1PA16 LINE L1 6026 6164 -2 3854 227 104 34 chr9 44014805 44014975 -73847652 + L1MC4a LINE L1 6517 6674 -1134 282 56 0 0 chr9 44014975 44015011 -73847616 + (TA)n Simple_repeat Simple_repeat 2 37 0 2275 95 0 3 chr9 44015011 44015306 -73847321 - AluY SINE Alu -17 294 1 3854 227 104 34 chr9 44015306 44016165 -73846462 + L1MC4a LINE L1 6674 7562 -246 2250 82 3 10 chr9 44016165 44016470 -73846157 - AluY SINE Alu -5 306 4 3854 227 104 34 chr9 44016470 44016736 -73845891 + L1MC4a LINE L1 7562 7808 0 213 159 0 0 chr9 44017273 44017317 -73845310 + A-rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr9 44017319 44017340 -73845287 + AT_rich Low_complexity Low_complexity 1 21 0 200 448 26 0 chr9 44017403 44017519 -73845108 - L2 LINE L2 -623 2691 2573 396 357 31 27 chr9 44017654 44017878 -73844749 - L2 LINE L2 -943 2371 2147 2228 176 19 27 chr9 44018236 44018718 -73843909 + L1MA5 LINE L1 5823 6300 0 26 0 0 0 chr9 44019129 44019155 -73843472 + AT_rich Low_complexity Low_complexity 1 26 0 199 393 25 33 chr9 44020981 44021103 -73841524 - L2 LINE L2 -3 3269 3149 2068 126 13 0 chr9 44021268 44021577 -73841050 - AluSp SINE Alu 0 313 1 2390 68 7 0 chr9 44022166 44022461 -73840166 - AluSp SINE Alu -16 297 1 248 216 0 0 chr9 44022510 44022561 -73840066 - MER58B DNA MER1_type 0 341 291 1015 196 93 47 chr9 44022627 44022948 -73839679 - MER58B DNA MER1_type -5 336 1 258 299 47 16 chr9 44023863 44023990 -73838637 - L1ME LINE L1 -376 5786 5656 603 352 37 3 chr9 44024162 44024533 -73838094 + L1ME3A LINE L1 5521 5904 -266 47 19 0 0 chr9 44024857 44024911 -73837716 + AT_rich Low_complexity Low_complexity 1 54 0 23 33 0 0 chr9 44024980 44025010 -73837617 + AT_rich Low_complexity Low_complexity 1 30 0 230 293 8 16 chr9 44025533 44025656 -73836971 + HAL1 LINE L1 923 1044 -1463 28 29 0 0 chr9 44026851 44026886 -73835741 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr9 44027284 44027306 -73835321 + AT_rich Low_complexity Low_complexity 1 22 0 303 278 97 42 chr9 44027487 44027631 -73834996 - HAL1b LINE L1 -746 602 451 1419 289 44 68 chr9 44027650 44028493 -73834134 - L1ME1 LINE L1 -27 6139 5317 669 191 48 8 chr9 44028884 44029010 -73833617 + FRAM SINE Alu 1 131 -45 21 57 0 0 chr9 44029019 44029054 -73833573 + AT_rich Low_complexity Low_complexity 1 35 0 399 304 52 40 chr9 44029174 44029599 -73833028 - L1ME1 LINE L1 -1391 4755 4326 1363 199 7 0 chr9 44029636 44029908 -73832719 + L1PA16 LINE L1 5877 6150 -16 727 209 7 0 chr9 44029908 44030047 -73832580 + MER67A LTR ERV1 404 543 0 249 345 23 0 chr9 44030058 44030145 -73832482 + L2 LINE L2 3225 3313 0 1151 206 5 5 chr9 44030166 44030380 -73832247 - MER46A DNA MER2_type -22 214 1 597 262 92 17 chr9 44030381 44030416 -73832211 - L1ME1 LINE L1 -1825 4321 4290 459 0 0 0 chr9 44030416 44030467 -73832160 + (TA)n Simple_repeat Simple_repeat 1 51 0 597 262 92 17 chr9 44030467 44030725 -73831902 - L1ME1 LINE L1 -1856 4290 4006 1575 232 30 24 chr9 44030725 44031155 -73831472 - MER89 LTR ERV1 0 559 28 1922 228 7 15 chr9 44031159 44031562 -73831065 - MER89-int LTR ERV1 -1 6800 6401 1558 282 58 31 chr9 44031562 44032080 -73830547 + MER74A LTR ERVL 1 532 -26 9163 204 25 16 chr9 44032139 44034344 -73828283 - L1PA16 LINE L1 -9 6157 3909 2211 48 44 0 chr9 44034344 44034646 -73827981 - AluY SINE Alu 0 314 1 9163 204 25 16 chr9 44034646 44035582 -73827045 - L1PA16 LINE L1 -2257 3909 2983 523 235 51 3 chr9 44036382 44036566 -73826061 - MLT1A2 LTR MaLR -4 370 162 756 192 11 50 chr9 44036606 44036788 -73825839 - MLT1A2 LTR MaLR -194 180 6 23 33 0 0 chr9 44037577 44037607 -73825020 + AT_rich Low_complexity Low_complexity 1 30 0 2185 117 0 0 chr9 44037666 44037965 -73824662 - AluSx SINE Alu -13 299 1 431 333 7 0 chr9 44038030 44038165 -73824462 + L1ME LINE L1 5506 5641 -521 1672 234 76 0 chr9 44038545 44038926 -73823701 + MER74A LTR ERVL 119 528 -30 207 290 0 0 chr9 44040021 44040090 -73822537 + (TCTCTG)n Simple_repeat Simple_repeat 4 72 0 22 70 0 0 chr9 44040313 44040356 -73822271 + AT_rich Low_complexity Low_complexity 1 43 0 29 47 0 0 chr9 44040603 44040646 -73821981 + AT_rich Low_complexity Low_complexity 1 43 0 29 70 0 0 chr9 44041014 44041071 -73821556 + AT_rich Low_complexity Low_complexity 1 57 0 21 71 0 0 chr9 44042400 44042442 -73820185 + AT_rich Low_complexity Low_complexity 1 42 0 188 111 28 0 chr9 44043327 44043363 -73819264 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 266 305 172 29 chr9 44043501 44043675 -73818952 + MIR SINE MIR 64 262 0 455 302 70 35 chr9 44044222 44044577 -73818050 - L1ME LINE L1 -348 5822 5458 24 32 0 0 chr9 44045731 44045762 -73816865 + AT_rich Low_complexity Low_complexity 1 31 0 1856 256 72 53 chr9 44045902 44046811 -73815816 - L1ME1 LINE L1 -5 6161 5244 1807 233 48 41 chr9 44046812 44047272 -73815355 - MER77 LTR ERV1 0 605 143 436 281 92 20 chr9 44047240 44047393 -73815234 - MER77 LTR ERV1 -380 225 62 * 21 0 0 0 chr9 44047475 44047496 -73815131 + AT_rich Low_complexity Low_complexity 1 21 0 8783 98 5 2 chr9 44047496 44049533 -73813094 + L1PA7 LINE L1 4089 6144 -10 417 275 70 58 chr9 44049541 44049955 -73812672 - L1ME1 LINE L1 -973 5173 4755 234 62 0 0 chr9 44050587 44050619 -73812008 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 4164 90 25 10 chr9 44050619 44051222 -73811405 - L1PA8 LINE L1 -28 6144 5533 1743 156 55 0 chr9 44052071 44052249 -73810378 - AluSx SINE Alu -7 305 103 212 0 36 0 chr9 44052249 44052277 -73810350 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1743 156 55 0 chr9 44052277 44052387 -73810240 - AluSx SINE Alu -209 103 1 358 266 11 0 chr9 44052394 44052488 -73810139 - MIR SINE MIR -65 197 103 395 263 11 0 chr9 44052966 44053061 -73809566 - Zaphod DNA AcHobo -1 4030 3935 346 20 39 0 chr9 44053557 44053608 -73809019 + (CAAAA)n Simple_repeat Simple_repeat 2 54 0 1388 225 21 106 chr9 44053822 44053853 -73808774 + MLT1D LTR MaLR 1 33 -472 2033 156 37 6 chr9 44053853 44054206 -73808421 + THE1B LTR MaLR 1 364 0 1388 225 21 106 chr9 44054206 44054459 -73808168 + MLT1D LTR MaLR 33 224 -281 1108 155 10 5 chr9 44054459 44054666 -73807961 - L1MA6 LINE L1 -6 6294 6087 1388 225 21 106 chr9 44054666 44054901 -73807726 + MLT1D LTR MaLR 224 477 -28 280 341 138 39 chr9 44055508 44055942 -73806685 - L2 LINE L2 -2248 1066 590 671 247 29 23 chr9 44058069 44058243 -73804384 - MER45A DNA AcHobo -3 175 1 24 67 0 0 chr9 44058444 44058489 -73804138 + AT_rich Low_complexity Low_complexity 1 45 0 33 66 0 0 chr9 44058548 44058609 -73804018 + AT_rich Low_complexity Low_complexity 1 61 0 180 0 0 0 chr9 44059511 44059531 -73803096 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 996 338 33 7 chr9 44059561 44059984 -73802643 + LTR16B LTR ERVL 22 455 -9 210 71 0 0 chr9 44060600 44060628 -73801999 + (T)n Simple_repeat Simple_repeat 1 28 0 2072 107 10 13 chr9 44060910 44061218 -73801409 - AluSg SINE Alu -3 307 1 1655 200 15 6 chr9 44061379 44061719 -73800908 + L1M3 LINE L1 5480 5822 -361 516 226 0 0 chr9 44061726 44061828 -73800799 + AluJ/FLAM SINE Alu 1 102 -210 2014 126 0 3 chr9 44062432 44062717 -73799910 + AluSc SINE Alu 16 299 -10 2133 94 3 7 chr9 44062921 44063220 -73799407 + AluSq SINE Alu 1 298 -15 1295 207 194 3 chr9 44064495 44064882 -73797745 - LOR1b LTR ERV1 0 461 1 1013 172 32 16 chr9 44065541 44065727 -73796900 + AluSx SINE Alu 1 189 -123 249 307 79 76 chr9 44065785 44066101 -73796526 + L3 LINE CR1 1142 1458 -119 331 322 153 17 chr9 44066962 44067139 -73795488 + L3 LINE CR1 1307 1507 -70 355 248 20 20 chr9 44068852 44068953 -73793674 + HsTC2 DNA Tc2 4 104 -1794 377 289 75 47 chr9 44068965 44069218 -73793409 - L1MEd LINE L1 -5493 626 367 386 191 0 48 chr9 44069267 44069351 -73793276 + HsTC2 DNA Tc2 1821 1900 0 1760 101 4 12 chr9 44069857 44070105 -73792522 - AluSg1 SINE Alu -20 289 44 446 301 8 0 chr9 44070580 44070703 -73791924 - MIR SINE MIR -60 202 79 1129 222 80 34 chr9 44071880 44072231 -73790396 + MLT1A2 LTR MaLR 4 370 -4 21 0 0 0 chr9 44072902 44072923 -73789704 + AT_rich Low_complexity Low_complexity 1 21 0 306 248 94 26 chr9 44074079 44074196 -73788431 + L1ME4a LINE L1 5976 6100 -21 879 144 0 14 chr9 44074209 44074355 -73788272 - AluJb SINE Alu -6 306 163 10337 203 72 45 chr9 44074355 44075203 -73787424 + L1M1 LINE L1 3305 4128 -3437 1699 60 94 0 chr9 44075203 44075438 -73787189 - AluY SINE Alu -16 295 39 10337 203 72 45 chr9 44075438 44077946 -73784681 + L1M1 LINE L1 4128 6735 -830 367 292 140 99 chr9 44078949 44079456 -73783171 + L1M2 LINE L1 395 922 -5927 523 241 128 35 chr9 44080184 44080387 -73782240 + MER77 LTR ERV1 4 225 -380 1224 280 56 30 chr9 44080407 44080835 -73781792 + MER77 LTR ERV1 161 599 -6 478 327 79 25 chr9 44080885 44081252 -73781375 - L1MEc LINE L1 -4574 1822 1436 281 338 76 22 chr9 44081286 44081511 -73781116 - L2 LINE L2 -4 3309 3073 188 292 79 22 chr9 44082759 44082848 -73779779 - L2 LINE L2 -4 3268 3175 1359 195 63 30 chr9 44083296 44083629 -73778998 - MER2 DNA MER2_type 0 344 1 196 389 0 0 chr9 44083899 44083971 -73778656 + L2 LINE L2 2843 2914 -358 535 228 175 6 chr9 44083976 44084147 -73778480 + MLT1A1 LTR MaLR 1 200 -165 425 129 3 5 chr9 44084141 44084218 -73778409 + MLT1A1 LTR MaLR 289 390 0 * 859 339 13 10 chr9 44084254 44084643 -73777984 + L1MEc LINE L1 411 800 -5596 347 260 42 16 chr9 44084722 44084914 -73777713 + L1MEc LINE L1 972 1168 -5228 294 277 6 54 chr9 44085098 44085264 -73777363 + HAL1 LINE L1 1389 1546 -961 23 0 0 0 chr9 44085265 44085288 -73777339 + AT_rich Low_complexity Low_complexity 1 23 0 320 314 22 81 chr9 44085374 44085559 -73777068 - MER96 DNA MER1_type? -1 174 1 255 215 0 118 chr9 44085683 44085730 -73776897 + L1MEc LINE L1 1985 2017 -4379 2767 10 0 0 chr9 44085730 44086035 -73776592 + AluYa5 SINE Alu 1 305 -6 255 215 0 118 chr9 44086035 44086080 -73776547 + L1MEc LINE L1 2017 2066 -4330 366 268 146 21 chr9 44086118 44086551 -73776076 + L1MEc LINE L1 2047 2495 -3720 516 204 91 8 chr9 44086568 44086700 -73775927 + L1MA3 LINE L1 6163 6305 0 1035 219 63 45 chr9 44086811 44087180 -73775447 + MLT1A1 LTR MaLR 1 335 -30 716 273 75 27 chr9 44087258 44087822 -73774805 + L1MEc LINE L1 3190 3780 -2435 14098 28 0 1 chr9 44087839 44090291 -73772336 - L1PA3 LINE L1 0 6155 3705 324 294 98 14 chr9 44090297 44090511 -73772116 + L1MEc LINE L1 3957 4188 -2027 555 264 20 10 chr9 44090513 44090714 -73771913 + L1MEc LINE L1 4525 4727 -1488 30 27 0 0 chr9 44090716 44090753 -73771874 + AT_rich Low_complexity Low_complexity 1 37 0 1321 283 80 40 chr9 44090779 44092010 -73770617 + L1M4 LINE L1 2269 3548 -2598 1960 172 11 16 chr9 44092403 44092780 -73769847 - THE1C LTR MaLR 0 375 1 242 324 81 36 chr9 44092781 44093028 -73769599 - L2 LINE L2 -123 3190 2933 1831 161 66 20 chr9 44093046 44093394 -73769233 - THE1B LTR MaLR 0 364 1 292 336 120 12 chr9 44093397 44093647 -73768980 - L1MEc LINE L1 -6015 381 105 218 95 24 0 chr9 44093655 44093697 -73768930 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 375 282 21 31 chr9 44093803 44094090 -73768537 - L1MEc LINE L1 -4079 2317 2034 358 287 74 37 chr9 44094203 44094419 -73768208 + L1M4 LINE L1 4155 4378 -1768 1062 257 30 116 chr9 44094420 44095310 -73767317 + L1MC4 LINE L1 6811 7550 -258 221 258 0 0 chr9 44095610 44095672 -73766955 + T-rich Low_complexity Low_complexity 1 62 0 215 347 28 0 chr9 44097030 44097102 -73765525 - L2 LINE L2 -47 3266 3193 2406 157 39 2 chr9 44097394 44097809 -73764818 - MER57B LTR ERV1 -4 430 1 792 296 46 32 chr9 44098111 44098456 -73764171 - LTR16B LTR ERVL -6 458 109 3876 166 75 42 chr9 44098463 44099337 -73763290 + MER4D LTR ERV1 1 903 0 237 294 157 50 chr9 44100103 44100365 -73762262 + MLT1J2 LTR MaLR 137 426 -24 361 297 115 33 chr9 44102108 44102290 -73760337 + MLT1J LTR MaLR 36 232 -279 25 65 0 0 chr9 44102754 44102800 -73759827 + AT_rich Low_complexity Low_complexity 1 46 0 528 289 40 32 chr9 44102847 44103124 -73759503 - L1ME3 LINE L1 0 6162 5884 1639 199 3 3 chr9 44103608 44103914 -73758713 - AluJb SINE Alu -6 306 1 229 87 22 22 chr9 44103955 44104001 -73758626 + (TA)n Simple_repeat Simple_repeat 1 46 0 2665 198 23 45 chr9 44104494 44105114 -73757513 + L1MA6 LINE L1 5694 6299 -1 508 132 0 0 chr9 44106385 44106461 -73756166 - AluSc SINE Alu -18 291 216 267 311 47 16 chr9 44107761 44107954 -73754673 + L1M4 LINE L1 3350 3548 -2598 2028 164 11 16 chr9 44108343 44108720 -73753907 - THE1C LTR MaLR 0 375 1 258 320 81 36 chr9 44108721 44108968 -73753659 - L2 LINE L2 -123 3190 2933 1830 161 66 20 chr9 44108986 44109334 -73753293 - THE1B LTR MaLR 0 364 1 270 327 114 24 chr9 44109337 44109591 -73753036 - L1MEc LINE L1 -6015 381 105 185 119 24 0 chr9 44109599 44109641 -73752986 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 393 278 21 21 chr9 44109747 44110031 -73752596 - L1MEc LINE L1 -4079 2317 2034 587 297 73 22 chr9 44110049 44110362 -73752265 + L1M4 LINE L1 4050 4378 -1768 1070 268 47 70 chr9 44110363 44111230 -73751397 + L1MC4 LINE L1 6811 7550 -258 205 274 0 0 chr9 44111523 44111585 -73751042 + T-rich Low_complexity Low_complexity 1 62 0 215 347 28 0 chr9 44112945 44113017 -73749610 - L2 LINE L2 -47 3266 3193 2466 160 39 0 chr9 44113313 44113726 -73748901 - MER57B LTR ERV1 -5 429 1 821 301 47 23 chr9 44114028 44114370 -73748257 - LTR16B LTR ERVL -6 458 109 3914 161 79 42 chr9 44114377 44115248 -73747379 + MER4D LTR ERV1 1 903 0 226 288 158 56 chr9 44116014 44116299 -73746328 + MLT1J2 LTR MaLR 137 450 0 343 313 119 11 chr9 44118022 44118198 -73744429 + MLT1J LTR MaLR 38 232 -279 514 292 40 32 chr9 44118756 44119033 -73743594 - L1ME3 LINE L1 0 6162 5884 1512 196 3 38 chr9 44119517 44119834 -73742793 - AluJb SINE Alu -6 306 1 229 121 61 30 chr9 44119861 44119927 -73742700 + (TA)n Simple_repeat Simple_repeat 2 69 0 2684 196 21 45 chr9 44120415 44121036 -73741591 + L1MA6 LINE L1 5694 6299 -1 25 0 0 0 chr9 44121993 44122018 -73740609 + AT_rich Low_complexity Low_complexity 1 25 0 1987 161 39 18 chr9 44122740 44122827 -73739800 - MER1B DNA MER1_type -2375 337 253 1940 221 39 65 chr9 44122827 44123396 -73739231 + MLT2B3 LTR ERVL 1 554 0 1987 161 39 18 chr9 44123396 44123638 -73738989 - MER1B DNA MER1_type -2459 253 1 857 195 19 123 chr9 44123638 44123946 -73738681 - MER93b LTR ERV1 0 373 98 2642 166 32 28 chr9 44124322 44124500 -73738127 - MER61D LTR ERV1 0 501 325 1906 151 3 0 chr9 44124500 44124791 -73737836 - AluSg SINE Alu -17 293 2 2642 166 32 28 chr9 44124791 44125111 -73737516 - MER61D LTR ERV1 -176 325 1 9200 191 48 41 chr9 44125112 44125384 -73737243 - MER61D-int LTR ERV1 -1 6995 6726 225 0 0 0 chr9 44125384 44125409 -73737218 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 9200 191 48 41 chr9 44125409 44128142 -73734485 - MER61D-int LTR ERV1 -270 6726 4014 2023 142 27 33 chr9 44128142 44128508 -73734119 - THE1B LTR MaLR 0 364 1 9200 191 48 41 chr9 44128508 44129959 -73732668 - MER61D-int LTR ERV1 -2982 4014 2575 2359 62 3 49 chr9 44129959 44130283 -73732344 - AluY SINE Alu -2 309 1 9200 191 48 41 chr9 44130283 44130911 -73731716 - MER61D-int LTR ERV1 -4421 2575 609 946 174 69 140 chr9 44130910 44131323 -73731304 - MER61D-int LTR ERV1 -4742 475 195 * 2604 155 8 2 chr9 44131419 44131818 -73730809 - MER61D LTR ERV1 -100 401 1 22 80 0 0 chr9 44132547 44132597 -73730030 + AT_rich Low_complexity Low_complexity 1 50 0 528 211 0 0 chr9 44133023 44133127 -73729500 - FRAM SINE Alu -10 166 63 283 159 48 16 chr9 44133127 44133190 -73729437 + LTR68 LTR ERV1 23 87 -653 1087 234 47 27 chr9 44133377 44133676 -73728951 + LTR68 LTR ERV1 309 613 -127 28 0 0 0 chr9 44133775 44133803 -73728824 + AT_rich Low_complexity Low_complexity 1 28 0 7573 229 79 64 chr9 44133899 44138544 -73724083 - L1PB3 LINE L1 -11 6859 2153 4646 157 40 35 chr9 44138530 44139524 -73723103 - L1PB3 LINE L1 -5066 1797 799 * 3858 279 39 31 chr9 44139525 44141216 -73721411 - L1PB3 LINE L1 -5223 1640 3 29 70 0 0 chr9 44141340 44141397 -73721230 + AT_rich Low_complexity Low_complexity 1 57 0 230 214 0 0 chr9 44143098 44143140 -73719487 + GA-rich Low_complexity Low_complexity 3 44 0 535 242 81 28 chr9 44143505 44143753 -73718874 + LTR37B LTR ERV1 208 468 0 489 331 68 70 chr9 44143884 44144193 -73718434 + L1MEd LINE L1 447 756 -5363 2117 120 3 3 chr9 44144193 44144493 -73718134 + AluSq SINE Alu 2 301 -12 489 331 68 70 chr9 44144493 44144700 -73717927 + L1MEd LINE L1 756 962 -5157 27 0 0 0 chr9 44144706 44144733 -73717894 + AT_rich Low_complexity Low_complexity 1 27 0 695 291 302 22 chr9 44145327 44145446 -73717181 + L2 LINE L2 1864 1948 -1366 236 71 48 0 chr9 44145446 44145488 -73717139 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 695 291 302 22 chr9 44145488 44145918 -73716709 + L2 LINE L2 1948 2567 -747 237 361 89 19 chr9 44145991 44146204 -73716423 + L2 LINE L2 2996 3223 -90 918 276 85 28 chr9 44146296 44146694 -73715933 + MLT1C LTR MaLR 47 467 0 26 50 0 0 chr9 44146976 44147016 -73715611 + AT_rich Low_complexity Low_complexity 1 40 0 257 348 68 22 chr9 44147078 44147434 -73715193 + L1MC/D LINE L1 5496 5876 -288 31 102 0 0 chr9 44148721 44148829 -73713798 + AT_rich Low_complexity Low_complexity 1 108 0 22 70 0 0 chr9 44149020 44149063 -73713564 + AT_rich Low_complexity Low_complexity 1 43 0 1417 263 55 44 chr9 44149346 44149918 -73712709 + MLT1G LTR MaLR 13 549 0 200 268 12 0 chr9 44151063 44151145 -73711482 + (TATATG)n Simple_repeat Simple_repeat 5 87 0 180 325 168 29 chr9 44151247 44151456 -73711171 - MIR SINE MIR 0 262 25 733 237 81 86 chr9 44151746 44152142 -73710485 - MSTD LTR MaLR 0 396 3 274 243 117 0 chr9 44152144 44152255 -73710372 + MER103 DNA DNA 31 154 -12 21 0 0 0 chr9 44152938 44152959 -73709668 + AT_rich Low_complexity Low_complexity 1 21 0 629 171 0 0 chr9 44152959 44153070 -73709557 - AluJb SINE Alu -14 298 188 1680 205 129 91 chr9 44153072 44153974 -73708653 - LTR1B LTR ERV1 -4 1016 1 1168 182 5 0 chr9 44153988 44154180 -73708447 - AluJb SINE Alu -119 193 1 27 0 0 0 chr9 44154207 44154234 -73708393 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr9 44154438 44154466 -73708161 + AT_rich Low_complexity Low_complexity 1 28 0 48 43 0 0 chr9 44154536 44154605 -73708022 + AT_rich Low_complexity Low_complexity 1 69 0 329 311 69 9 chr9 44154838 44155090 -73707537 + L1ME LINE L1 5272 5539 -582 559 314 102 8 chr9 44155322 44155558 -73707069 + MIR SINE MIR 5 262 0 1007 247 5 0 chr9 44158002 44158225 -73704402 + MER58A DNA MER1_type 1 224 0 325 225 127 70 chr9 44158237 44158379 -73704248 + MER69A DNA AcHobo 20 169 -8 1954 169 28 22 chr9 44158480 44158842 -73703785 + THE1B LTR MaLR 1 364 0 10536 105 32 9 chr9 44158842 44160386 -73702241 + THE1B-int LTR MaLR 1 1580 0 1914 164 39 25 chr9 44160386 44160745 -73701882 + THE1B LTR MaLR 1 364 0 1949 131 13 7 chr9 44162207 44162679 -73699948 - AluSq SINE Alu 0 313 2 22 0 0 0 chr9 44163295 44163317 -73699310 + AT_rich Low_complexity Low_complexity 1 22 0 567 59 12 0 chr9 44163979 44164064 -73698563 - L1PA13 LINE L1 0 6163 6078 440 171 13 0 chr9 44164461 44164537 -73698090 + MER45A DNA AcHobo 101 177 -1 1395 233 86 16 chr9 44164841 44165227 -73697400 + MLT1C LTR MaLR 55 467 0 619 252 0 0 chr9 44165751 44165878 -73696749 + MER45A DNA AcHobo 52 178 0 2328 294 62 58 chr9 44169089 44169518 -73693109 + L2 LINE L2 1098 1524 -1790 766 230 17 65 chr9 44169518 44169748 -73692879 - MER20 DNA MER1_type 0 219 1 2328 294 62 58 chr9 44169748 44170537 -73692090 + L2 LINE L2 1524 2320 -994 878 288 126 18 chr9 44170649 44171038 -73691589 + LTR33A LTR ERVL 87 517 -6 694 294 54 95 chr9 44171038 44171752 -73690875 + L2 LINE L2 2310 3066 -247 194 276 69 0 chr9 44171939 44171997 -73690630 + L3 LINE CR1 932 993 -584 341 317 10 0 chr9 44172114 44172218 -73690409 + MIR SINE MIR 110 214 -48 196 306 111 35 chr9 44172881 44173025 -73689602 + L2 LINE L2 2717 2871 -443 2516 63 0 0 chr9 44173203 44173505 -73689122 + AluY SINE Alu 1 302 -9 277 281 88 38 chr9 44174045 44174205 -73688422 + L1MC5 LINE L1 7697 7864 -97 793 122 139 0 chr9 44376155 44376299 -73486328 - MSTB LTR MaLR -293 164 1 562 257 40 14 chr9 44376328 44376476 -73486151 - L2 LINE L2 0 3272 3121 637 254 17 86 chr9 44376837 44376975 -73485652 + MIR SINE MIR 35 153 -109 2332 71 0 0 chr9 44376975 44377279 -73485348 - AluSx SINE Alu 0 304 1 637 254 17 86 chr9 44377279 44377371 -73485256 + MIR SINE MIR 153 250 -12 3449 258 70 63 chr9 44377733 44378648 -73483979 + HAL1 LINE L1 1 908 -1599 4644 106 21 15 chr9 44378648 44379339 -73483288 + L1MA3 LINE L1 5555 6253 -52 2332 81 10 0 chr9 44379339 44379635 -73482992 + AluSp SINE Alu 2 300 -13 4644 106 21 15 chr9 44379635 44379688 -73482939 + L1MA3 LINE L1 6253 6304 -1 3449 258 70 63 chr9 44379688 44380171 -73482456 + HAL1 LINE L1 908 1414 -1093 2005 165 10 52 chr9 44380171 44380576 -73482051 - MLT1B LTR MaLR 0 390 3 3449 258 70 63 chr9 44380576 44380737 -73481890 + HAL1 LINE L1 1414 1572 -935 986 98 8 0 chr9 44380737 44380869 -73481758 + AluSg SINE Alu 1 133 -177 2218 123 0 0 chr9 44380869 44381179 -73481448 + AluSg SINE Alu 1 310 0 310 278 22 3 chr9 44381459 44381561 -73481066 + MLT1I LTR MaLR 324 403 -6 1626 247 61 52 chr9 44381569 44382188 -73480439 + HAL1 LINE L1 1597 2221 -286 323 119 15 0 chr9 44382471 44382538 -73480089 + (TA)n Simple_repeat Simple_repeat 1 68 0 439 239 67 118 chr9 44382540 44382778 -73479849 - MER102b DNA MER1_type -9 332 107 186 121 35 35 chr9 44382927 44382985 -73479642 + A-rich Low_complexity Low_complexity 4 61 0 276 346 50 0 chr9 44383366 44383467 -73479160 + L1ME1 LINE L1 5947 6052 -114 2343 210 73 10 chr9 44383629 44384233 -73478394 + L1MC4a LINE L1 7162 7803 -5 393 249 110 38 chr9 44385207 44385444 -73477183 - L1ME LINE L1 -322 5799 5546 26 0 0 0 chr9 44385444 44385470 -73477157 + AT_rich Low_complexity Low_complexity 1 26 0 257 73 0 24 chr9 44385631 44385672 -73476955 + (TA)n Simple_repeat Simple_repeat 2 41 0 2130 122 76 15 chr9 44385943 44386286 -73476341 + THE1B LTR MaLR 1 364 0 11164 91 25 15 chr9 44386286 44387850 -73474777 + THE1B-int LTR MaLR 1 1580 0 1977 115 142 16 chr9 44387850 44388173 -73474454 + THE1B LTR MaLR 1 364 0 24 32 0 0 chr9 44388274 44388305 -73474322 + AT_rich Low_complexity Low_complexity 1 31 0 2085 149 0 0 chr9 44388489 44388798 -73473829 - AluSq SINE Alu -4 309 1 22 35 0 0 chr9 44389083 44389112 -73473515 + AT_rich Low_complexity Low_complexity 1 29 0 2217 121 0 0 chr9 44389385 44389682 -73472945 + AluSq SINE Alu 1 297 -16 226 276 26 0 chr9 44389726 44389802 -73472825 + L1MC/D LINE L1 5858 5935 -1873 272 172 0 16 chr9 44390149 44390213 -73472414 + (TA)n Simple_repeat Simple_repeat 2 64 0 1760 177 0 0 chr9 44390221 44390503 -73472124 - AluJo SINE Alu -30 282 1 820 206 28 22 chr9 44390642 44390822 -73471805 + MLT1A1 LTR MaLR 185 365 0 24 0 0 0 chr9 44391686 44391710 -73470917 + AT_rich Low_complexity Low_complexity 1 24 0 378 213 71 50 chr9 44392390 44392494 -73470133 + MER58 DNA MER1_type 38 144 -197 975 156 55 92 chr9 44392494 44392805 -73469822 - MER57A LTR ERV1 0 403 1 417 180 0 133 chr9 44392806 44392934 -73469693 - MER57A-int LTR ERV1 -2 7535 7425 884 199 102 61 chr9 44392934 44393025 -73469602 - LTR54B LTR ERV1 -121 377 291 1911 139 4 0 chr9 44393025 44393291 -73469336 - AluSx SINE Alu -45 267 1 884 199 102 61 chr9 44393291 44393561 -73469066 - LTR54B LTR ERV1 -207 291 1 608 200 25 0 chr9 44393582 44393702 -73468925 + MER58 DNA MER1_type 2294 2416 -4 792 270 63 17 chr9 44393705 44393942 -73468685 + MIR SINE MIR 15 262 0 2288 108 3 0 chr9 44394138 44394445 -73468182 + AluSg SINE Alu 1 308 -2 2141 142 53 44 chr9 44394707 44395158 -73467469 - L1MB8 LINE L1 -9 6169 5715 1287 166 0 18 chr9 44395273 44395490 -73467137 + AluJo SINE Alu 82 294 -18 190 106 21 106 chr9 44396139 44396186 -73466441 + MIR SINE MIR 84 126 -136 1035 249 122 10 chr9 44396218 44396627 -73466000 + L1ME LINE L1 5357 5811 -351 21 57 0 0 chr9 44397074 44397109 -73465518 + AT_rich Low_complexity Low_complexity 1 35 0 187 240 48 67 chr9 44398093 44398197 -73464430 + MIR SINE MIR 70 171 -91 382 310 133 43 chr9 44399212 44399467 -73463160 + L2 LINE L2 2562 2839 -475 263 239 239 0 chr9 44399687 44399779 -73462848 + L2 LINE L2 3199 3312 -1 329 189 124 51 chr9 44400123 44400288 -73462339 + L1ME LINE L1 5638 5809 -361 21 0 0 0 chr9 44400648 44400669 -73461958 + AT_rich Low_complexity Low_complexity 1 21 0 26 64 0 0 chr9 44400808 44400855 -73461772 + AT_rich Low_complexity Low_complexity 1 47 0 2224 104 7 3 chr9 44401235 44401542 -73461085 - AluSc SINE Alu -1 308 1 1958 87 0 0 chr9 44402482 44402735 -73459892 - AluY SINE Alu -18 293 41 274 203 68 14 chr9 44403756 44403830 -73458797 + L2 LINE L2 3232 3309 -4 1472 145 4 0 chr9 44404856 44405084 -73457543 + MER2 DNA MER2_type 1 229 -116 1902 131 4 4 chr9 44405935 44406210 -73456417 + AluSx SINE Alu 1 275 -37 372 119 0 0 chr9 44406214 44406273 -73456354 + (CA)n Simple_repeat Simple_repeat 2 60 0 730 159 30 8 chr9 44406335 44406467 -73456160 + MER5A DNA MER1_type 32 166 -23 691 183 0 0 chr9 44406471 44406586 -73456041 - Tigger1 DNA MER2_type 0 2418 2304 897 153 108 13 chr9 44406590 44406747 -73455880 + FRAM SINE Alu 1 169 -7 12936 93 37 8 chr9 44406747 44408053 -73454574 - Tigger1 DNA MER2_type -109 2309 929 2102 96 4 4 chr9 44408053 44408363 -73454264 + AluSg SINE Alu 1 310 0 12936 93 37 8 chr9 44408363 44408922 -73453705 - Tigger1 DNA MER2_type -1489 929 388 762 234 101 54 chr9 44408925 44409241 -73453386 - HAL1b LINE L1 -579 769 439 722 249 144 76 chr9 44409240 44409766 -73452861 - HAL1b LINE L1 -710 638 77 * 189 132 0 0 chr9 44410793 44410831 -73451796 + (TTTTTA)n Simple_repeat Simple_repeat 5 42 0 1237 164 28 5 chr9 44410865 44411078 -73451549 - MER20 DNA MER1_type 0 219 2 2269 106 0 28 chr9 44412660 44412981 -73449646 - AluSx SINE Alu 0 312 1 31 44 0 0 chr9 44413895 44413940 -73448687 + AT_rich Low_complexity Low_complexity 1 45 0 785 65 47 0 chr9 44414625 44414732 -73447895 + L1PA10 LINE L1 6054 6165 -3 287 57 0 0 chr9 44414805 44414840 -73447787 + U2 snRNA snRNA 1 35 -153 2233 111 3 0 chr9 44415151 44415448 -73447179 - AluSx SINE Alu -14 298 1 1351 114 126 15 chr9 44417061 44417332 -73445295 - L1MA9 LINE L1 -5 6307 6007 27 0 0 0 chr9 44417507 44417534 -73445093 + AT_rich Low_complexity Low_complexity 1 27 0 281 164 91 0 chr9 44418399 44418454 -73444173 - L2 LINE L2 -4 3309 3250 339 25 0 0 chr9 44420459 44420499 -73442128 + (TA)n Simple_repeat Simple_repeat 1 40 0 2071 77 55 4 chr9 44420518 44420671 -73441956 - AluSx SINE Alu -24 288 113 311 0 26 0 chr9 44420671 44420710 -73441917 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 2071 77 55 4 chr9 44420710 44420829 -73441798 - AluSx SINE Alu -199 113 2 793 176 0 0 chr9 44421220 44421345 -73441282 - FLAM_A SINE Alu -8 125 1 21 0 0 0 chr9 44422351 44422372 -73440255 + AT_rich Low_complexity Low_complexity 1 21 0 581 246 181 0 chr9 44423040 44423255 -73439372 + MIR SINE MIR 9 262 0 360 0 0 0 chr9 44425187 44425227 -73437400 + (T)n Simple_repeat Simple_repeat 1 40 0 2523 68 0 0 chr9 44426239 44426548 -73436079 + AluY SINE Alu 1 309 -2 23 33 0 0 chr9 44426599 44426629 -73435998 + AT_rich Low_complexity Low_complexity 1 30 0 206 262 206 40 chr9 44426927 44427053 -73435574 - L2 LINE L2 -4 3268 3122 230 320 39 62 chr9 44427140 44427268 -73435359 - L2 LINE L2 -200 3072 2948 192 328 144 8 chr9 44427334 44427459 -73435168 - L2 LINE L2 -456 2858 2717 192 77 0 0 chr9 44428065 44428091 -73434536 + (T)n Simple_repeat Simple_repeat 1 26 0 236 54 54 0 chr9 44428583 44428620 -73434007 + T-rich Low_complexity Low_complexity 2 40 0 1735 121 12 4 chr9 44428642 44428891 -73433736 - AluSx SINE Alu -27 285 35 2295 78 10 20 chr9 44429473 44429779 -73432848 - AluSc SINE Alu -6 303 1 25 0 0 0 chr9 44430922 44430947 -73431680 + AT_rich Low_complexity Low_complexity 1 25 0 33225 34 7 2 chr9 44430964 44435827 -73426800 - L1PA3 LINE L1 0 6155 1267 437 162 0 0 chr9 44435930 44436004 -73426623 - AluJ/FLAM SINE Alu -238 74 1 259 145 72 0 chr9 44436107 44436176 -73426451 + (TA)n Simple_repeat Simple_repeat 1 74 0 192 268 113 14 chr9 44436445 44436516 -73426111 - MIR SINE MIR -52 210 133 983 260 45 4 chr9 44436630 44436872 -73425755 - MIR SINE MIR -10 252 1 23 0 0 0 chr9 44437502 44437525 -73425102 + AT_rich Low_complexity Low_complexity 1 23 0 279 180 0 0 chr9 44438086 44438136 -73424491 - L2 LINE L2 -9 3304 3255 300 314 57 93 chr9 44438430 44438816 -73423811 - L2 LINE L2 -9 3263 2892 767 339 25 7 chr9 44438896 44439176 -73423451 + MLT1K LTR MaLR 2 286 -302 859 241 50 6 chr9 44439211 44439529 -73423098 + HAL1 LINE L1 638 1000 -1507 3436 186 30 16 chr9 44439532 44440227 -73422400 + L1ME1 LINE L1 5457 6161 -5 2443 237 152 26 chr9 44440237 44441185 -73421442 + HAL1 LINE L1 993 2059 -448 1970 152 3 0 chr9 44441516 44441818 -73420809 + AluSg SINE Alu 1 303 -7 225 217 9 94 chr9 44442015 44442121 -73420506 - LTR37A LTR ERV1 -89 337 241 21 0 0 0 chr9 44442122 44442143 -73420484 + AT_rich Low_complexity Low_complexity 1 21 0 965 211 53 4 chr9 44442285 44442439 -73420188 - AluJo SINE Alu -26 286 116 207 0 0 0 chr9 44442439 44442462 -73420165 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 965 211 53 4 chr9 44442462 44442534 -73420093 - AluJo SINE Alu -196 116 49 620 223 0 23 chr9 44442598 44442728 -73419899 - FLAM_C SINE Alu -6 127 1 1035 257 104 20 chr9 44442819 44443343 -73419284 + L2 LINE L2 2541 3097 -216 1301 242 20 3 chr9 44443347 44443645 -73418982 - AluJo SINE Alu -9 303 1 1497 179 22 63 chr9 44443654 44444017 -73418610 - MLT1D LTR MaLR -8 497 150 569 199 15 22 chr9 44444020 44444156 -73418471 + FLAM_C SINE Alu 9 143 0 1278 237 7 29 chr9 44444158 44444466 -73418161 + AluJo SINE Alu 1 301 -11 2308 257 50 57 chr9 44444561 44444984 -73417643 + MER21B LTR ERV1 19 443 -420 1455 174 0 100 chr9 44444984 44445324 -73417303 - AluJb SINE Alu -5 307 2 2308 257 50 57 chr9 44445324 44445405 -73417222 + MER21B LTR ERV1 443 523 -340 1506 189 32 11 chr9 44445405 44445686 -73416941 + AluJo SINE Alu 12 298 -14 2308 257 50 57 chr9 44445686 44445973 -73416654 + MER21B LTR ERV1 523 806 -57 1784 156 3 7 chr9 44446523 44446811 -73415816 + AluSx SINE Alu 4 290 -22 1790 152 7 19 chr9 44446965 44447275 -73415352 - AluSg1 SINE Alu -3 306 1 1505 209 18 6 chr9 44447436 44447775 -73414852 + L1M3 LINE L1 5480 5822 -361 496 235 0 0 chr9 44447782 44447884 -73414743 + AluJ/FLAM SINE Alu 1 102 -210 5588 239 68 26 chr9 44448429 44450835 -73411792 + L1M3 LINE L1 3097 5610 -570 274 157 22 101 chr9 44451643 44451732 -73410895 + L1MA9 LINE L1 6126 6207 -105 588 217 26 26 chr9 44451733 44451885 -73410742 + L1M3 LINE L1 5442 5593 -587 * 7639 211 12 93 chr9 44451876 44453526 -73409101 + L1 LINE L1 2873 4431 -1715 1088 163 0 0 chr9 44453526 44453698 -73408929 + AluSp SINE Alu 136 307 -6 7639 211 12 93 chr9 44453698 44454429 -73408198 + L1 LINE L1 4431 5219 -927 369 120 7 63 chr9 44454437 44454579 -73408048 + (CCCTAA)n Simple_repeat Simple_repeat 2 135 0 311 128 0 47 chr9 44454622 44454708 -73407919 + (CCCTAA)n Simple_repeat Simple_repeat 2 83 0 3267 156 8 14 chr9 44454852 44455487 -73407140 - TAR1 Satellite telomeric -43 2068 1438 1327 212 34 31 chr9 44456803 44457096 -73405531 + AluJo SINE Alu 3 296 -6 3056 215 20 13 chr9 44457209 44458338 -73404289 + L1MA5 LINE L1 4808 5946 -354 1142 236 27 8 chr9 44458339 44458598 -73404029 + AluJo SINE Alu 1 264 -48 802 148 89 0 chr9 44458702 44458871 -73403756 + L1MA5 LINE L1 6111 6294 -6 665 300 102 20 chr9 44458905 44459282 -73403345 + MLT1G1 LTR MaLR 79 561 -34 2380 198 49 43 chr9 44460620 44461675 -73400952 + L1MB8 LINE L1 4771 5836 -342 1995 133 101 5 chr9 44461703 44462078 -73400549 + MER61C LTR ERV1 14 424 -10 1200 224 67 12 chr9 44462082 44462412 -73400215 + L1MB8 LINE L1 5826 6173 -5 1213 205 110 20 chr9 44462647 44463003 -73399624 + MER4E LTR ERV1 1 388 -391 3050 139 26 0 chr9 44463099 44463589 -73399038 + L1PA10 LINE L1 5655 6157 -11 1938 152 21 0 chr9 44463973 44464263 -73398364 - AluSq SINE Alu -15 298 3 23 33 0 0 chr9 44464847 44464877 -73397750 + AT_rich Low_complexity Low_complexity 1 30 0 254 197 49 16 chr9 44464884 44464945 -73397682 - MER34C LTR ERV1 -100 485 423 1863 125 68 0 chr9 44465213 44465494 -73397133 + AluSg SINE Alu 1 300 -10 2099 123 3 10 chr9 44466947 44467257 -73395370 - AluSg SINE Alu 0 310 3 2158 142 0 0 chr9 44467608 44467918 -73394709 - AluSx SINE Alu -1 311 2 1302 162 0 78 chr9 44468342 44468613 -73394014 - AluJb SINE Alu -25 287 38 187 250 50 0 chr9 44468635 44468695 -73393932 + MIR SINE MIR 198 260 -2 1879 205 80 36 chr9 44469703 44470201 -73392426 + L1MB8 LINE L1 5653 6172 -6 23 33 0 0 chr9 44471040 44471070 -73391557 + AT_rich Low_complexity Low_complexity 1 30 0 416 316 51 13 chr9 44471283 44471441 -73391186 + L2 LINE L2 2722 2885 -429 29 28 0 0 chr9 44471736 44471772 -73390855 + AT_rich Low_complexity Low_complexity 1 36 0 987 252 36 7 chr9 44472159 44472433 -73390194 - L1MB7 LINE L1 0 6184 5903 22 0 0 0 chr9 44475405 44475427 -73387200 + AT_rich Low_complexity Low_complexity 1 22 0 462 274 85 55 chr9 44475495 44475745 -73386882 - L1P4 LINE L1 -478 5643 5396 1985 147 0 3 chr9 44475859 44476165 -73386462 + AluSq SINE Alu 1 305 -8 30 59 0 0 chr9 44476351 44476402 -73386225 + AT_rich Low_complexity Low_complexity 1 51 0 605 79 22 0 chr9 44478168 44478257 -73384370 - L1PA3 LINE L1 -2 6153 6063 27 49 0 0 chr9 44480246 44480287 -73382340 + AT_rich Low_complexity Low_complexity 1 41 0 1354 259 31 0 chr9 44480984 44481278 -73381349 + AluJo SINE Alu 1 303 -9 195 225 0 0 chr9 44481499 44481539 -73381088 - L2 LINE L2 -12 3301 3262 1972 156 7 0 chr9 44481821 44482122 -73380505 - AluSx SINE Alu -9 303 1 1993 131 7 0 chr9 44482591 44482874 -73379753 - AluSp SINE Alu -27 286 2 24 77 0 0 chr9 44484087 44484139 -73378488 + AT_rich Low_complexity Low_complexity 1 52 0 22 56 0 0 chr9 44484483 44484519 -73378108 + AT_rich Low_complexity Low_complexity 1 36 0 1922 162 0 0 chr9 44484631 44484934 -73377693 + AluSx SINE Alu 6 308 -4 239 217 0 0 chr9 44485921 44485967 -73376660 + (CA)n Simple_repeat Simple_repeat 1 46 0 278 183 195 12 chr9 44488126 44488208 -73374419 + MER5A DNA MER1_type 10 106 -83 6759 66 9 23 chr9 44488702 44490340 -73372287 - SVA Other Other -727 1386 1 387 73 0 0 chr9 44490350 44490405 -73372222 + (GGGAGA)n Simple_repeat Simple_repeat 1 55 0 2358 79 0 0 chr9 44490810 44491101 -73371526 - AluY SINE Alu -20 291 1 1400 216 10 34 chr9 44491297 44491593 -73371034 - AluJo SINE Alu -23 289 1 1555 209 0 7 chr9 44491627 44491909 -73370718 + AluJb SINE Alu 3 282 -30 6066 60 1 3 chr9 44492298 44493070 -73369557 + L1PA5 LINE L1 5376 6146 -8 1175 227 30 54 chr9 44493444 44493739 -73368888 + AluJb SINE Alu 13 300 -12 1976 138 0 28 chr9 44493910 44494248 -73368379 - AluSx SINE Alu 0 331 2 580 212 0 0 chr9 44494502 44494601 -73368026 - FLAM_A SINE Alu -43 99 1 204 324 139 9 chr9 44496940 44497048 -73365579 + MIR SINE MIR 20 141 -121 224 378 81 14 chr9 44497654 44497876 -73364751 + MIR SINE MIR 20 256 -6 10282 28 2 0 chr9 44497896 44499895 -73362732 - L1PA2 LINE L1 0 6155 4155 595 242 0 24 chr9 44500045 44500169 -73362458 + FLAM_A SINE Alu 6 126 -16 207 88 0 0 chr9 44500200 44500234 -73362393 + (TTG)n Simple_repeat Simple_repeat 2 35 0 636 143 52 39 chr9 44500624 44500778 -73361849 - MER21A LTR ERV1 -29 902 747 717 164 45 0 chr9 44500784 44500918 -73361709 + Tigger7 DNA MER2_type 2348 2487 0 2249 154 9 42 chr9 44501943 44502377 -73360250 + L1MC1 LINE L1 5914 6333 0 2083 135 0 7 chr9 44502385 44502681 -73359946 + AluSx SINE Alu 1 294 -18 23 0 0 0 chr9 44502723 44502746 -73359881 + AT_rich Low_complexity Low_complexity 1 23 0 1970 169 3 0 chr9 44502749 44503057 -73359570 + AluSq SINE Alu 1 309 -4 27 0 0 0 chr9 44503178 44503205 -73359422 + AT_rich Low_complexity Low_complexity 1 27 0 1887 202 52 9 chr9 44503618 44504059 -73358568 + MER68 LTR ERV1 1 460 -102 560 29 0 0 chr9 44504077 44504147 -73358480 - L1P LINE L1 -945 5201 5132 2205 38 0 0 chr9 44504147 44504462 -73358165 + L1PA2 LINE L1 5876 6195 0 482 163 12 0 chr9 44504467 44504547 -73358080 + MER68 LTR ERV1 481 561 -1 1367 214 13 29 chr9 44504908 44505031 -73357596 + AluJb SINE Alu 1 124 -188 191 61 30 0 chr9 44505031 44505064 -73357563 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 1367 214 13 29 chr9 44505064 44505248 -73357379 + AluJb SINE Alu 124 303 -9 880 187 0 0 chr9 44505283 44505422 -73357205 + FAM SINE Alu 22 160 -25 244 291 0 0 chr9 44505724 44505779 -73356848 + (TG)n Simple_repeat Simple_repeat 2 56 0 1918 198 33 12 chr9 44506032 44506457 -73356170 + Tigger2a DNA MER2_type 1 434 0 22 0 0 0 chr9 44506726 44506748 -73355879 + AT_rich Low_complexity Low_complexity 1 22 0 210 289 97 26 chr9 44507287 44507401 -73355226 + MIR SINE MIR 94 215 -47 522 0 0 0 chr9 44507620 44507678 -73354949 + (TA)n Simple_repeat Simple_repeat 1 58 0 472 206 10 0 chr9 44508109 44508206 -73354421 - U6 snRNA snRNA -1 106 9 637 169 127 0 chr9 44509166 44509317 -73353310 + FLAM_C SINE Alu 1 166 0 195 184 0 0 chr9 44510125 44510163 -73352464 + (CAA)n Simple_repeat Simple_repeat 2 39 0 2287 111 0 0 chr9 44510212 44510510 -73352117 + AluSc SINE Alu 1 298 -11 190 257 129 14 chr9 44511197 44511267 -73351360 + L2 LINE L2 3138 3215 -57 21 0 0 0 chr9 44511975 44511996 -73350631 + AT_rich Low_complexity Low_complexity 1 21 0 376 255 83 21 chr9 44512376 44512611 -73350016 - Charlie8 DNA MER1_type -990 1427 81 21 57 0 0 chr9 44512833 44512868 -73349759 + AT_rich Low_complexity Low_complexity 1 35 0 267 168 274 124 chr9 44513504 44513617 -73349010 - FLAM_A SINE Alu 0 133 4 226 282 129 48 chr9 44513632 44513756 -73348871 + MER5A DNA MER1_type 56 189 0 442 295 140 47 chr9 44515429 44515645 -73346982 + MIR SINE MIR 4 236 -26 1713 182 0 7 chr9 44515653 44515949 -73346678 - AluJo SINE Alu -18 294 1 352 246 78 42 chr9 44516048 44516190 -73346437 + MER104 DNA Tc2 34 180 0 219 217 0 50 chr9 44516637 44516697 -73345930 + L2 LINE L2 3216 3272 0 31 58 0 0 chr9 44516772 44516824 -73345803 + AT_rich Low_complexity Low_complexity 1 52 0 332 319 42 7 chr9 44517323 44517467 -73345160 - L1ME LINE L1 -445 5676 5528 482 66 11 33 chr9 44517686 44517777 -73344850 + (TA)n Simple_repeat Simple_repeat 1 89 0 2194 115 0 0 chr9 44517805 44518109 -73344518 + AluSx SINE Alu 1 304 -8 21 36 0 0 chr9 44518158 44518186 -73344441 + AT_rich Low_complexity Low_complexity 1 28 0 326 299 91 110 chr9 44519683 44520291 -73342336 - L1M2 LINE L1 -5704 1145 550 1128 261 48 52 chr9 44520681 44521259 -73341368 - L1ME2 LINE L1 -134 6030 5455 2168 106 0 53 chr9 44521576 44521898 -73340729 + AluSp SINE Alu 1 305 -8 1650 146 12 0 chr9 44521954 44522200 -73340427 - AluSx SINE Alu -19 293 45 273 57 0 0 chr9 44522331 44522366 -73340261 + (CA)n Simple_repeat Simple_repeat 1 35 0 319 272 165 87 chr9 44523116 44523509 -73339118 + L1M2 LINE L1 472 895 -5954 247 95 0 111 chr9 44524545 44524608 -73338019 - Alu SINE Alu 0 300 245 3327 198 32 56 chr9 44525013 44525984 -73336643 - L1MC2 LINE L1 -912 5234 4287 1003 171 46 16 chr9 44525990 44526290 -73336337 + L1MC2 LINE L1 5246 5979 -214 * 11961 27 0 0 chr9 44526275 44528544 -73334083 + L1PA2 LINE L1 3906 6175 0 881 213 107 0 chr9 44528546 44528818 -73333809 + L1MC2 LINE L1 6043 6343 -1 2802 190 50 78 chr9 44528840 44529542 -73333085 + L1MB7 LINE L1 5317 5990 -194 907 173 0 42 chr9 44529542 44529710 -73332917 + FRAM SINE Alu 1 161 -5 2802 190 50 78 chr9 44529710 44529890 -73332737 + L1MB7 LINE L1 5990 6174 -10 4807 97 50 26 chr9 44530830 44531632 -73330995 - Tigger4(Zombi) DNA MER2_type 0 2731 1911 2332 175 119 0 chr9 44531635 44532104 -73330523 - Tigger4(Zombi) DNA MER2_type -2205 526 2 339 158 0 0 chr9 44532057 44532114 -73330513 + MER46A DNA MER2_type 97 153 -83 * 211 293 0 53 chr9 44534370 44534445 -73328182 + L2 LINE L2 3182 3252 -20 1389 150 55 20 chr9 44534739 44534993 -73327634 + AluSx SINE Alu 33 295 -17 405 265 145 9 chr9 44535009 44535048 -73327579 + L1MC4 LINE L1 7609 7641 -401 2201 105 0 23 chr9 44535048 44535352 -73327275 - AluY SINE Alu -14 297 1 405 265 145 9 chr9 44535352 44535493 -73327134 + L1MC4 LINE L1 7641 7762 -280 351 0 0 0 chr9 44535493 44535532 -73327095 + (TG)n Simple_repeat Simple_repeat 2 40 0 405 265 145 9 chr9 44535532 44535637 -73326990 + L1MC4 LINE L1 7762 8042 0 184 346 77 31 chr9 44535637 44535767 -73326860 + MIR3 SINE MIR 12 147 -61 932 166 113 46 chr9 44537904 44538206 -73324421 - MER33 DNA MER1_type -2 322 1 22 0 0 0 chr9 44538361 44538383 -73324244 + AT_rich Low_complexity Low_complexity 1 22 0 228 117 65 65 chr9 44538728 44538805 -73323822 + AluJb SINE Alu 41 117 -185 31 0 0 0 chr9 44538850 44538881 -73323746 + AT_rich Low_complexity Low_complexity 1 31 0 1325 183 28 58 chr9 44539773 44540169 -73322458 - MLT2B3 LTR ERVL 0 554 183 2097 159 119 15 chr9 44540193 44541879 -73320748 - SATR1 Satellite Satellite 0 2252 45 2488 72 0 0 chr9 44541879 44542183 -73320444 + AluY SINE Alu 1 304 -7 2097 159 119 15 chr9 44542183 44542234 -73320393 - SATR1 Satellite Satellite -2207 45 1 1596 189 128 8 chr9 44545148 44545625 -73317002 - SATR1 Satellite Satellite 0 534 1 1953 172 98 33 chr9 44545655 44546732 -73315895 + SATR1 Satellite Satellite 1 1147 -1 2064 180 99 14 chr9 44546759 44547470 -73315157 + SATR1 Satellite Satellite 1 771 0 2207 176 111 4 chr9 44547496 44548997 -73313630 - SATR1 Satellite Satellite -110 1660 1 1248 195 75 0 chr9 44548997 44549345 -73313282 + L1PA15 LINE L1 4964 5337 -809 378 125 411 0 chr9 44549345 44549457 -73313170 + LTR1B LTR ERV1 427 584 -242 1043 144 53 0 chr9 44549462 44549650 -73312977 + L1PA15 LINE L1 5347 5544 -621 2694 191 59 28 chr9 44549650 44550404 -73312223 + LTR1B LTR ERV1 1 785 0 3768 141 8 10 chr9 44550407 44551026 -73311601 + L1PA15 LINE L1 5544 6161 -4 251 333 44 5 chr9 44551047 44551251 -73311376 + L1ME LINE L1 5646 5857 -264 25 65 0 0 chr9 44551515 44551561 -73311066 + AT_rich Low_complexity Low_complexity 1 46 0 336 182 13 13 chr9 44552523 44552600 -73310027 - L1ME1 LINE L1 -4 6162 6086 1221 271 75 35 chr9 44552608 44552855 -73309772 - L1M4 LINE L1 -2284 3862 3627 2233 108 3 3 chr9 44552855 44553161 -73309466 - AluSp SINE Alu -7 306 1 1221 271 75 35 chr9 44553161 44553207 -73309420 - L1M4 LINE L1 -2519 3627 3584 1531 214 58 0 chr9 44553207 44553552 -73309075 - MER47A DNA MER2_type -1 365 1 1221 271 75 35 chr9 44553552 44554265 -73308362 - L1M4 LINE L1 -2562 3584 2814 * 3023 228 120 10 chr9 44554262 44554826 -73307801 - L1MC4 LINE L1 -364 7678 7178 2086 123 3 3 chr9 44554826 44555118 -73307509 - AluSx SINE Alu -20 292 1 3023 228 120 10 chr9 44555118 44555558 -73307069 - L1MC4 LINE L1 -864 7178 6563 26 64 0 0 chr9 44556260 44556307 -73306320 + AT_rich Low_complexity Low_complexity 1 47 0 1976 142 7 0 chr9 44556441 44556762 -73305865 + AluSx SINE Alu 1 323 0 29 59 0 15 chr9 44557019 44557059 -73305568 + AT_rich Low_complexity Low_complexity 1 41 -26 525 144 10 10 chr9 44557059 44557156 -73305471 + L1PB1 LINE L1 6053 6149 -2 29 59 0 15 chr9 44557156 44557183 -73305444 + AT_rich Low_complexity Low_complexity 41 67 0 1497 225 3 7 chr9 44557431 44557729 -73304898 + AluJb SINE Alu 1 297 -15 415 189 0 0 chr9 44557729 44557803 -73304824 + L1MB8 LINE L1 5495 5568 -598 483 259 0 0 chr9 44557845 44557953 -73304674 - FLAM_C SINE Alu -35 108 1 1914 217 51 60 chr9 44557954 44558512 -73304115 + L1MB8 LINE L1 5557 6111 -67 1474 229 0 0 chr9 44558512 44558818 -73303809 - AluJb SINE Alu -6 306 1 1914 217 51 60 chr9 44558818 44558881 -73303746 + L1MB8 LINE L1 6111 6173 -5 1985 141 0 7 chr9 44558901 44559200 -73303427 + AluSx SINE Alu 6 302 -10 1412 210 3 23 chr9 44559215 44559515 -73303112 + AluJo SINE Alu 11 304 -8 1359 109 78 11 chr9 44559848 44562726 -73299901 + GSATII Satellite centromeric 1 3069 -32 1167 154 5 0 chr9 44564469 44564670 -73297957 + MER2 DNA MER2_type 28 229 -116 1919 127 4 4 chr9 44565524 44565799 -73296828 + AluSx SINE Alu 1 275 -37 336 102 0 0 chr9 44565803 44565852 -73296775 + (CA)n Simple_repeat Simple_repeat 2 50 0 754 152 30 8 chr9 44565914 44566046 -73296581 + MER5A DNA MER1_type 32 166 -23 652 183 0 0 chr9 44566050 44566165 -73296462 - Tigger1 DNA MER2_type 0 2418 2304 883 136 136 13 chr9 44566169 44566323 -73296304 + FRAM SINE Alu 1 170 -6 11874 96 47 8 chr9 44566323 44567607 -73295020 - Tigger1 DNA MER2_type -109 2309 928 2071 103 4 4 chr9 44567607 44567941 -73294686 + AluSg SINE Alu 1 334 0 11874 96 47 8 chr9 44567941 44568495 -73294132 - Tigger1 DNA MER2_type -1490 928 397 722 228 92 53 chr9 44568538 44568819 -73293808 - HAL1b LINE L1 -618 730 439 587 247 149 75 chr9 44568818 44569341 -73293286 - HAL1b LINE L1 -710 638 77 * 314 171 43 0 chr9 44569430 44569547 -73293080 + (TTAA)n Simple_repeat Simple_repeat 3 124 0 189 132 0 0 chr9 44570466 44570504 -73292123 + (TTTTTA)n Simple_repeat Simple_repeat 5 42 0 1250 164 28 5 chr9 44570538 44570752 -73291875 - MER20 DNA MER1_type 0 219 1 2206 114 0 28 chr9 44572327 44572644 -73289983 - AluSx SINE Alu -4 308 1 31 44 0 0 chr9 44573556 44573601 -73289026 + AT_rich Low_complexity Low_complexity 1 45 0 786 65 47 0 chr9 44574286 44574393 -73288234 + L1PA10 LINE L1 6054 6165 -3 264 86 0 0 chr9 44574466 44574501 -73288126 + U2 snRNA snRNA 1 35 -153 2278 108 3 0 chr9 44574812 44575108 -73287519 - AluSx SINE Alu -15 297 1 202 151 0 75 chr9 44576581 44576634 -73285993 + CT-rich Low_complexity Low_complexity 4 52 0 1268 120 120 21 chr9 44576722 44577005 -73285622 - L1MA9 LINE L1 -5 6307 5997 27 0 0 0 chr9 44577168 44577195 -73285432 + AT_rich Low_complexity Low_complexity 1 27 0 283 164 91 0 chr9 44578057 44578112 -73284515 - L2 LINE L2 -4 3309 3250 36 23 0 0 chr9 44580115 44580158 -73282469 + AT_rich Low_complexity Low_complexity 1 43 0 1932 68 42 113 chr9 44580158 44580468 -73282159 - AluSx SINE Alu -24 288 1 762 192 0 0 chr9 44580858 44580983 -73281644 - FLAM_A SINE Alu -8 125 1 564 251 181 0 chr9 44582675 44582890 -73279737 + MIR SINE MIR 9 262 0 243 0 0 0 chr9 44584821 44584848 -73277779 + (T)n Simple_repeat Simple_repeat 1 27 0 2608 50 0 0 chr9 44585860 44586162 -73276465 + AluY SINE Alu 1 302 -9 22 35 0 0 chr9 44586211 44586240 -73276387 + AT_rich Low_complexity Low_complexity 1 29 0 230 320 39 62 chr9 44586751 44586879 -73275748 - L2 LINE L2 -200 3072 2948 186 333 105 9 chr9 44586945 44587059 -73275568 - L2 LINE L2 -456 2858 2734 183 80 0 0 chr9 44587671 44587696 -73274931 + (T)n Simple_repeat Simple_repeat 1 25 0 257 27 54 0 chr9 44588177 44588214 -73274413 + (TTTTTA)n Simple_repeat Simple_repeat 2 40 0 1725 118 72 4 chr9 44588236 44588499 -73274128 - AluSx SINE Alu -27 285 5 2245 82 10 20 chr9 44589063 44589367 -73273260 - AluSc SINE Alu -8 301 1 203 171 0 0 chr9 44590506 44590547 -73272080 + T-rich Low_complexity Low_complexity 1 41 0 42106 36 21 8 chr9 44590553 44596626 -73266001 - L1PA3 LINE L1 0 6155 1 2708 143 17 2 chr9 44596736 44597203 -73265424 - L1MB1 LINE L1 0 6168 5695 1886 164 10 13 chr9 44597347 44597657 -73264970 - AluJo SINE Alu -1 311 3 194 222 143 0 chr9 44597938 44598001 -73264626 - MIR SINE MIR -113 149 78 1649 203 7 3 chr9 44598880 44599186 -73263441 - AluJb SINE Alu -5 307 1 22 0 0 0 chr9 44599191 44599213 -73263414 + AT_rich Low_complexity Low_complexity 1 22 0 1628 169 17 24 chr9 44599213 44599508 -73263119 - AluJo SINE Alu -18 294 2 2769 16 0 3 chr9 44599890 44600201 -73262426 + AluYa5 SINE Alu 1 310 -1 243 0 0 0 chr9 44600471 44600498 -73262129 + (T)n Simple_repeat Simple_repeat 1 27 0 235 262 115 0 chr9 44602779 44602840 -73259787 + L2 LINE L2 3204 3271 -1 254 241 129 69 chr9 44602845 44602961 -73259666 + MER5B DNA MER1_type 3 125 -53 353 264 28 51 chr9 44602961 44603139 -73259488 - L1MC5 LINE L1 -25 7936 7763 229 220 51 17 chr9 44603152 44603211 -73259416 - L1MC5 LINE L1 -51 7910 7850 961 220 117 69 chr9 44603417 44603854 -73258773 - MER39 LTR ERV1 0 707 250 244 273 34 34 chr9 44603831 44603919 -73258708 - LTR48B LTR ERV1 -556 88 1 * 2085 105 0 66 chr9 44604029 44604362 -73258265 - AluSx SINE Alu -1 311 1 359 294 73 0 chr9 44604421 44604530 -73258097 - L1ME3 LINE L1 -81 6081 5965 1783 178 0 14 chr9 44605869 44606162 -73256465 + AluJb SINE Alu 1 289 -23 325 153 333 0 chr9 44606473 44606545 -73256082 + Tigger3(Golem) DNA MER2_type 2 97 -2932 * 1269 126 10 24 chr9 44606543 44606750 -73255877 + Tigger3(Golem) DNA MER2_type 2811 3014 -15 2506 138 25 11 chr9 44606762 44607211 -73255416 - L1MB1 LINE L1 0 6168 5714 202 151 0 75 chr9 44607434 44607487 -73255140 + CT-rich Low_complexity Low_complexity 4 52 0 1357 117 120 21 chr9 44607575 44607858 -73254769 - L1MA9 LINE L1 -5 6307 5997 27 0 0 0 chr9 44608021 44608048 -73254579 + AT_rich Low_complexity Low_complexity 1 27 0 281 164 91 0 chr9 44608910 44608965 -73253662 - L2 LINE L2 -4 3309 3250 36 23 0 0 chr9 44610968 44611011 -73251616 + AT_rich Low_complexity Low_complexity 1 43 0 1932 68 42 113 chr9 44611011 44611321 -73251306 - AluSx SINE Alu -24 288 1 762 192 0 0 chr9 44611711 44611836 -73250791 - FLAM_A SINE Alu -8 125 1 551 250 184 0 chr9 44613532 44613744 -73248883 + MIR SINE MIR 12 262 0 8894 166 46 6 chr9 44616711 44619905 -73242722 + L1PB1 LINE L1 1087 4557 -2305 6360 126 18 5 chr9 44619911 44621372 -73241255 + L1PB1 LINE L1 5392 6867 0 289 322 66 46 chr9 44621998 44622150 -73240477 + MIR SINE MIR 86 240 -22 566 106 18 46 chr9 44624890 44625004 -73237623 - L1MC3 LINE L1 -488 7507 7189 233 279 0 0 chr9 44625004 44625065 -73237562 - MLT1F1 LTR MaLR -443 124 64 1232 143 77 44 chr9 44625072 44625344 -73237283 - L1MC3 LINE L1 -666 7119 6839 187 275 0 0 chr9 44625545 44625585 -73237042 - MIR SINE MIR -171 91 52 22 70 0 0 chr9 44625947 44625990 -73236637 + AT_rich Low_complexity Low_complexity 1 43 0 2566 55 7 0 chr9 44626237 44626546 -73236081 + AluY SINE Alu 1 311 0 741 122 52 0 chr9 44626563 44626678 -73235949 + FLAM_A SINE Alu 1 121 -12 379 219 219 28 chr9 44626779 44626994 -73235633 - MER112 DNA MER1_type 0 256 1 226 213 0 0 chr9 44627945 44627992 -73234635 + GA-rich Low_complexity Low_complexity 1 47 0 225 0 0 0 chr9 44629324 44629349 -73233278 + (TA)n Simple_repeat Simple_repeat 1 25 0 180 299 43 34 chr9 44631037 44631154 -73231473 - MIR SINE MIR -70 192 75 742 237 68 58 chr9 44633117 44633249 -73229378 - L1MC5 LINE L1 -135 7826 7697 728 195 0 0 chr9 44633249 44633377 -73229250 + FLAM_C SINE Alu 1 128 -5 742 237 68 58 chr9 44633377 44633658 -73228969 - L1MC5 LINE L1 -264 7697 7409 21 82 0 0 chr9 44633887 44633936 -73228691 + AT_rich Low_complexity Low_complexity 1 49 0 28 29 0 0 chr9 44634888 44634923 -73227704 + AT_rich Low_complexity Low_complexity 1 35 0 896 269 0 0 chr9 44635044 44635256 -73227371 + MIR SINE MIR 51 262 0 371 328 54 30 chr9 44635710 44636006 -73226621 - L2 LINE L2 -1 3271 2969 2406 177 105 7 chr9 44636205 44640447 -73222180 - SATR1 Satellite Satellite 0 4658 1 247 229 11 56 chr9 44640585 44640764 -73221863 + (TAA)n Simple_repeat Simple_repeat 1 171 0 1807 205 115 65 chr9 44640862 44642084 -73220543 + SATR1 Satellite Satellite 1 1283 -8 2291 182 96 22 chr9 44642121 44644815 -73217812 - SATR1 Satellite Satellite -2 2894 1 413 228 6 31 chr9 44644816 44644978 -73217649 + (TAA)n Simple_repeat Simple_repeat 3 160 0 204 221 11 63 chr9 44645012 44645202 -73217425 + (TAA)n Simple_repeat Simple_repeat 1 180 0 1894 207 124 63 chr9 44645228 44646366 -73216261 + SATR1 Satellite Satellite 1 1208 -87 274 258 22 47 chr9 44646914 44647195 -73215432 + SATR1 Satellite Satellite 1 274 -135 3837 128 5 13 chr9 44647291 44647893 -73214734 - HERVE LTR ERV1 -3967 3846 3250 1450 231 92 66 chr9 44648627 44649296 -73213331 + SATR1 Satellite Satellite 1 651 -1676 3096 210 19 80 chr9 44649296 44650328 -73212299 - LTR5 LTR ERVK 0 969 1 1450 231 92 66 chr9 44650328 44650853 -73211774 + SATR1 Satellite Satellite 651 2285 -42 289 164 0 33 chr9 44650889 44650950 -73211677 - LTR5 LTR ERVK -910 59 1 821 236 68 39 chr9 44650950 44651316 -73211311 + SATR1 Satellite Satellite 1 376 -131 1976 127 30 3 chr9 44651442 44651742 -73210885 - AluSc SINE Alu -1 308 1 1451 265 9 58 chr9 44651743 44652192 -73210435 - L1MEc LINE L1 -5932 464 38 691 226 8 73 chr9 44652193 44652427 -73210200 + MER20B DNA MER1_type 563 781 -2 629 205 16 0 chr9 44652439 44652561 -73210066 + MER94 DNA DNA 1 124 -10 952 243 5 0 chr9 44653038 44653252 -73209375 - MIR SINE MIR 0 262 48 347 302 78 53 chr9 44653572 44653969 -73208658 - L2 LINE L2 -841 2473 2067 1860 190 79 41 chr9 44654107 44654550 -73208077 - MLT1C LTR MaLR 0 467 8 1034 161 16 115 chr9 44655884 44655965 -73206662 + MER20 DNA MER1_type 1 88 -131 1665 137 7 4 chr9 44655965 44656235 -73206392 - L1MB3 LINE L1 -7 6176 5906 1034 161 16 115 chr9 44656235 44656396 -73206231 + MER20 DNA MER1_type 88 219 0 559 253 47 25 chr9 44656433 44656740 -73205887 - MLT1I LTR MaLR -1 408 61 183 42 0 0 chr9 44656859 44656883 -73205744 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1761 149 4 11 chr9 44656906 44657175 -73205452 - AluJb SINE Alu -45 267 1 300 266 80 43 chr9 44657601 44657789 -73204838 + MER117 DNA MER1_type 2 196 -1 677 102 0 2 chr9 44657980 44658239 -73204388 + AluSx SINE Alu 1 308 0 428 271 8 0 chr9 44658245 44658363 -73204264 - L2 LINE L2 -15 3298 3180 1020 248 121 22 chr9 44658620 44658983 -73203644 + L2 LINE L2 2910 3308 -5 1434 131 68 0 chr9 44659451 44659672 -73202955 + AluJb SINE Alu 67 302 -10 240 282 0 14 chr9 44659675 44659746 -73202881 - MIR3 SINE MIR -27 181 112 296 261 134 15 chr9 44660433 44660567 -73202060 + MIR SINE MIR 110 259 -3 1805 149 23 32 chr9 44661515 44661823 -73200804 - AluJb SINE Alu -7 305 1 1463 160 4 8 chr9 44662441 44662678 -73199949 + MER65A LTR ERV1 41 276 -169 890 141 55 12 chr9 44662778 44662941 -73199686 + MER65A LTR ERV1 276 445 0 828 233 22 0 chr9 44663101 44663281 -73199346 + MER5A DNA MER1_type 5 188 -1 279 0 0 0 chr9 44663345 44663376 -73199251 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1167 152 62 43 chr9 44663409 44663620 -73199007 - AluJb SINE Alu -97 215 1 631 225 7 7 chr9 44663638 44663780 -73198847 + MER5B DNA MER1_type 37 178 0 513 207 173 0 chr9 44663794 44663944 -73198683 - MER5A DNA MER1_type -6 183 8 614 217 49 5 chr9 44664221 44664405 -73198222 - MER113 DNA MER1_type? -329 192 1 21 0 0 0 chr9 44664810 44664831 -73197796 + AT_rich Low_complexity Low_complexity 1 21 0 279 268 57 39 chr9 44665260 44665406 -73197221 + MIR3 SINE MIR 58 207 -1 2184 111 0 0 chr9 44665825 44666113 -73196514 - AluSx SINE Alu -24 288 1 21 36 0 0 chr9 44667241 44667269 -73195358 + AT_rich Low_complexity Low_complexity 1 28 0 4712 169 54 48 chr9 44668875 44668959 -73193668 - L1 LINE L1 -1828 4318 4236 1134 129 5 58 chr9 44668959 44669183 -73193444 - L1PA16 LINE L1 0 6166 5955 4712 169 54 48 chr9 44669183 44670124 -73192503 - L1 LINE L1 -1910 4236 3287 390 285 23 31 chr9 44670851 44670946 -73191681 + MIR SINE MIR 53 148 -114 2113 148 54 11 chr9 44670946 44671297 -73191330 + MER47A DNA MER2_type 1 366 0 390 285 23 31 chr9 44671297 44671331 -73191296 + MIR SINE MIR 148 181 -81 431 304 8 0 chr9 44671859 44671984 -73190643 + MER94 DNA DNA 3 128 -6 288 232 105 32 chr9 44672292 44672387 -73190240 - LTR67 LTR ERVL 0 557 456 2572 188 93 0 chr9 44672815 44673330 -73189297 - MER99 DNA DNA 0 828 266 503 250 18 0 chr9 44673667 44673779 -73188848 - MER99 DNA DNA -714 114 1 821 126 0 30 chr9 44675205 44675340 -73187287 + FLAM_C SINE Alu 1 131 -2 224 275 0 0 chr9 44675572 44675652 -73186975 + (TAA)n Simple_repeat Simple_repeat 3 82 0 675 279 21 0 chr9 44675659 44675849 -73186778 - MIR SINE MIR -10 252 59 333 239 0 0 chr9 44676413 44676484 -73186143 + MIR SINE MIR 80 150 -112 347 183 12 0 chr9 44676487 44676569 -73186058 + (TA)n Simple_repeat Simple_repeat 1 83 0 563 138 145 14 chr9 44676839 44676977 -73185650 + MER103 DNA DNA 3 158 -8 396 125 0 0 chr9 44677428 44677484 -73185143 + Alu SINE Alu 238 293 -7 340 256 74 8 chr9 44677477 44677598 -73185029 + MER103 DNA DNA 38 166 0 * 447 163 163 8 chr9 44677997 44678120 -73184507 - MIR SINE MIR -3 259 118 1495 145 99 0 chr9 44678906 44679148 -73183479 + AluJb SINE Alu 1 266 -46 1717 129 14 14 chr9 44679246 44679541 -73183086 - L1MA7 LINE L1 -8 6283 5989 213 39 0 0 chr9 44680432 44680458 -73182169 + (A)n Simple_repeat Simple_repeat 1 26 0 225 0 0 0 chr9 44680592 44680617 -73182010 + (CA)n Simple_repeat Simple_repeat 1 25 0 468 0 0 0 chr9 44681970 44682022 -73180605 + (CA)n Simple_repeat Simple_repeat 2 53 0 1446 204 40 23 chr9 44683886 44684190 -73178437 - AluJb SINE Alu -3 309 1 69 59 0 0 chr9 44684341 44684459 -73178168 + AT_rich Low_complexity Low_complexity 1 118 0 25 0 0 0 chr9 44684627 44684652 -73177975 + AT_rich Low_complexity Low_complexity 1 25 0 1612 159 12 8 chr9 44685013 44685265 -73177362 - AluJo SINE Alu -19 293 41 284 219 81 16 chr9 44685409 44685532 -73177095 - L1MC5 LINE L1 -498 7463 7333 1866 192 3 3 chr9 44685533 44685892 -73176735 - MLT1A1 LTR MaLR -6 359 1 229 264 42 0 chr9 44685892 44685964 -73176663 - L1MC5 LINE L1 -630 7331 7257 * 460 266 48 31 chr9 44685962 44686398 -73176229 - L1MC4 LINE L1 -646 7396 6960 2305 115 0 3 chr9 44686944 44687257 -73175370 - AluSx SINE Alu 0 312 1 1093 147 34 34 chr9 44687308 44687512 -73175115 + MER3 DNA MER1_type 2 205 -4 280 167 0 61 chr9 44687775 44687841 -73174786 - MER4D LTR ERV1 -810 62 1 23 0 0 0 chr9 44689775 44689798 -73172829 + AT_rich Low_complexity Low_complexity 1 23 0 506 267 158 38 chr9 44690051 44690628 -73171999 + L1ME4a LINE L1 5379 6024 -97 492 256 13 58 chr9 44690753 44690909 -73171718 + MIR SINE MIR 49 197 -65 217 291 0 0 chr9 44691161 44691216 -73171411 + (CA)n Simple_repeat Simple_repeat 1 55 0 1783 176 7 7 chr9 44692726 44693032 -73169595 - AluJo SINE Alu -6 306 1 310 188 38 0 chr9 44693133 44693213 -73169414 + L1ME4a LINE L1 5774 5856 -265 292 316 0 0 chr9 44693312 44693391 -73169236 - MIR SINE MIR -121 141 63 193 315 0 0 chr9 44695692 44695746 -73166881 - MIR SINE MIR -68 140 87 808 255 80 11 chr9 44695925 44696188 -73166439 + MLT1C LTR MaLR 187 467 0 878 224 46 12 chr9 44696212 44696471 -73166156 - MLT1C LTR MaLR 0 467 200 1412 156 8 0 chr9 44696471 44696708 -73165919 - ERVL LTR ERVL -1363 4401 4163 2503 156 15 0 chr9 44696719 44697129 -73165498 - MSTB LTR MaLR -10 416 1 777 163 56 12 chr9 44697129 44697289 -73165338 - ERVL LTR ERVL -1598 4166 4000 502 251 73 73 chr9 44697802 44698172 -73164455 - MLT1J2 LTR MaLR -43 407 59 217 316 53 0 chr9 44698336 44698431 -73164196 + L2 LINE L2 3208 3307 -6 254 313 48 0 chr9 44698513 44698596 -73164031 + L2 LINE L2 2395 2481 -833 305 135 0 0 chr9 44698605 44698657 -73163970 - MLT1F LTR MaLR -1 541 490 427 107 13 0 chr9 44698662 44698737 -73163890 - MLT1F LTR MaLR -185 357 282 456 232 187 0 chr9 44698825 44698980 -73163647 - L2 LINE L2 0 3313 3130 1571 234 60 1 chr9 44698985 44699434 -73163193 - MLT1F LTR MaLR -58 509 1 387 324 51 17 chr9 44699451 44699627 -73163000 + L2 LINE L2 2494 2675 -639 1086 264 90 38 chr9 44699663 44700259 -73162368 - L2 LINE L2 0 3313 2681 275 292 0 14 chr9 44700283 44700355 -73162272 + L2 LINE L2 2716 2786 -528 27 0 0 0 chr9 44700359 44700386 -73162241 + AT_rich Low_complexity Low_complexity 1 27 0 441 0 0 0 chr9 44700563 44700612 -73162015 + (TG)n Simple_repeat Simple_repeat 2 50 0 588 14 0 0 chr9 44700853 44700922 -73161705 + (TTTC)n Simple_repeat Simple_repeat 4 72 0 186 250 60 90 chr9 44701736 44701836 -73160791 - MIR SINE MIR -89 119 23 266 313 12 0 chr9 44701937 44702017 -73160610 - MIR SINE MIR -61 147 67 389 272 74 36 chr9 44702235 44702544 -73160083 - L1MC5 LINE L1 -140 7821 7501 8814 244 50 9 chr9 44702728 44704901 -73157726 + L1PBa LINE L1 2719 5054 -1808 276 77 0 0 chr9 44704901 44704940 -73157687 + (CA)n Simple_repeat Simple_repeat 2 40 0 8814 244 50 9 chr9 44704940 44705813 -73156814 + L1PBa LINE L1 5054 5890 -972 28 29 0 0 chr9 44705916 44705951 -73156676 + AT_rich Low_complexity Low_complexity 1 35 0 1330 168 69 0 chr9 44706495 44706798 -73155829 - MER33 DNA MER1_type 0 324 1 189 0 0 0 chr9 44707008 44707029 -73155598 + (A)n Simple_repeat Simple_repeat 1 21 0 305 269 25 67 chr9 44707141 44707260 -73155367 - MIR SINE MIR -62 146 33 407 75 30 0 chr9 44709503 44709570 -73153057 - L1MB4 LINE L1 0 6180 6112 6995 177 48 64 chr9 44711269 44712966 -73149661 + MER52A LTR ERV1 1 1755 0 35 24 0 0 chr9 44715096 44715138 -73147489 + AT_rich Low_complexity Low_complexity 1 42 0 2148 131 0 3 chr9 44715518 44715823 -73146804 + AluSx SINE Alu 1 304 -8 505 304 59 26 chr9 44716526 44716796 -73145831 + L1MC/D LINE L1 5545 5823 -1985 587 212 9 0 chr9 44716872 44716985 -73145642 - FRAM SINE Alu -22 154 41 5581 156 12 11 chr9 44717090 44718849 -73143778 + L1PB1 LINE L1 4396 6151 0 17159 97 4 210 chr9 44720156 44722282 -73140345 + L1P LINE L1 1189 3751 -2395 389 197 0 0 chr9 44722282 44722353 -73140274 + MER21B LTR ERV1 15 85 -778 17159 97 4 210 chr9 44722353 44722382 -73140245 + L1P LINE L1 3751 3784 -2362 295 227 45 0 chr9 44722382 44722448 -73140179 + MER21B LTR ERV1 21 89 -774 17159 97 4 210 chr9 44722448 44722726 -73139901 + L1P LINE L1 3784 4117 -2029 2127 133 3 0 chr9 44722726 44723034 -73139593 + AluSp SINE Alu 1 309 -4 17159 97 4 210 chr9 44723034 44723288 -73139339 + L1P LINE L1 4117 4422 -1724 2379 73 3 3 chr9 44723288 44723591 -73139036 + AluY SINE Alu 1 303 -8 17159 97 4 210 chr9 44723591 44725898 -73136729 + L1P LINE L1 4422 5265 -881 771 243 60 11 chr9 44726051 44726421 -73136206 + L1M4 LINE L1 3025 3412 -2734 295 340 34 25 chr9 44726907 44727043 -73135584 - MER5A DNA MER1_type -3 175 44 227 219 68 137 chr9 44726927 44727073 -73135554 + MER5A DNA MER1_type 42 177 -12 * 2085 204 12 66 chr9 44727278 44727857 -73134770 + LTR55 LTR ERV 1 548 0 1602 174 42 55 chr9 44728775 44729154 -73133473 + MLT1A2 LTR MaLR 1 374 0 394 286 105 26 chr9 44729236 44729446 -73133181 - MIR SINE MIR -36 226 4 22 0 0 0 chr9 44730268 44730290 -73132337 + AT_rich Low_complexity Low_complexity 1 22 0 743 126 24 8 chr9 44731267 44731394 -73131233 + L1MA5A LINE L1 5905 6033 -264 379 267 147 17 chr9 44731528 44731760 -73130867 + L2 LINE L2 1556 1817 -1497 461 337 45 16 chr9 44731932 44732175 -73130452 + L2 LINE L2 2219 2468 -846 199 349 93 0 chr9 44732231 44732317 -73130310 + L2 LINE L2 3118 3211 -61 245 29 29 0 chr9 44732628 44732662 -73129965 + (CA)n Simple_repeat Simple_repeat 2 36 0 229 227 261 0 chr9 44733024 44733112 -73129515 + MIR SINE MIR 82 192 -70 2129 108 11 0 chr9 44733176 44733453 -73129174 + AluSx SINE Alu 6 285 -27 648 70 0 0 chr9 44733459 44733545 -73129082 + (TAGA)n Simple_repeat Simple_repeat 2 87 0 1113 216 97 128 chr9 44733722 44733964 -73128663 - L1MC5 LINE L1 -55 7906 7658 2103 118 3 0 chr9 44733964 44734251 -73128376 + AluSx SINE Alu 4 291 -21 1113 216 97 128 chr9 44734251 44734936 -73127691 - L1MC5 LINE L1 -303 7658 7008 614 193 67 0 chr9 44735056 44735175 -73127452 + MER20 DNA MER1_type 93 219 0 24 32 0 0 chr9 44736217 44736248 -73126379 + AT_rich Low_complexity Low_complexity 1 31 0 788 272 46 17 chr9 44736289 44736528 -73126099 + L2 LINE L2 2147 2392 -922 1798 156 125 3 chr9 44736835 44737156 -73125471 + MLT1A1 LTR MaLR 5 364 -1 280 235 12 25 chr9 44737790 44737871 -73124756 + MIR SINE MIR 156 235 -27 1109 164 9 73 chr9 44739816 44740048 -73122579 - MER20 DNA MER1_type -2 217 1 873 108 78 0 chr9 44740252 44740381 -73122246 + MER85 DNA T2_type 1 139 0 523 128 239 0 chr9 44741677 44741794 -73120833 + MLT1E3 LTR MaLR 474 618 -6 271 284 35 52 chr9 44741939 44742055 -73120572 + MIR SINE MIR 31 144 -118 319 382 7 7 chr9 44742539 44742691 -73119936 - L2 LINE L2 -527 2787 2636 2308 120 0 0 chr9 44745897 44746327 -73116300 + AluSx SINE Alu 1 430 0 743 308 52 4 chr9 44746414 44746664 -73115963 - MIR SINE MIR 0 262 1 228 284 123 0 chr9 44746752 44746833 -73115794 + L1MEd LINE L1 270 360 -5759 249 261 0 15 chr9 44747408 44747473 -73115154 - L1 LINE L1 -1222 4924 4861 217 325 75 42 chr9 44747658 44747778 -73114849 - MIR SINE MIR -133 129 6 186 43 0 0 chr9 44748107 44748130 -73114497 + (CA)n Simple_repeat Simple_repeat 2 24 0 403 345 0 9 chr9 44749595 44749708 -73112919 - L2 LINE L2 -1 3271 3160 657 179 34 8 chr9 44751070 44751187 -73111440 - MLT1A1 LTR MaLR 0 365 246 316 284 101 0 chr9 44751833 44751964 -73110663 + MIR SINE MIR 57 200 -62 1753 183 35 6 chr9 44751985 44752313 -73110314 - MLT1A1 LTR MaLR 0 365 10 1655 206 19 25 chr9 44752313 44752677 -73109950 + L1PA12 LINE L1 13 374 -7207 1087 264 42 72 chr9 44754560 44755112 -73107515 - MLT1K LTR MaLR 0 588 54 836 177 81 27 chr9 44755368 44755554 -73107073 + MLT1D LTR MaLR 1 196 -309 5234 168 16 4 chr9 44755673 44757241 -73105386 - L1PB1 LINE L1 -124 6027 4446 454 173 154 25 chr9 44757751 44757913 -73104714 + MER113 DNA MER1_type? 7 189 -332 2566 52 0 3 chr9 44757956 44758264 -73104363 + AluY SINE Alu 1 307 -4 352 275 89 51 chr9 44758794 44758821 -73103806 - MIR SINE MIR -3 259 234 2296 95 0 13 chr9 44758821 44759126 -73103501 + AluSg SINE Alu 1 301 -9 352 275 89 51 chr9 44759126 44759334 -73103293 - MIR SINE MIR -28 234 15 685 244 115 19 chr9 44759863 44760072 -73102555 - Charlie8 DNA MER1_type -2142 275 47 393 188 0 0 chr9 44760072 44760152 -73102475 + (CA)n Simple_repeat Simple_repeat 1 80 0 223 182 0 0 chr9 44760203 44760247 -73102380 - MIR3 SINE MIR -1 207 164 305 271 52 10 chr9 44761990 44762086 -73100541 - L2 LINE L2 -5 3267 3168 2858 162 34 19 chr9 44762744 44763270 -73099357 + L1MA9 LINE L1 5316 5849 -463 1970 185 35 37 chr9 44763272 44763815 -73098812 - MLT2A2 LTR ERVL -8 546 2 2770 147 24 11 chr9 44763817 44764274 -73098353 + L1MA9 LINE L1 5848 6310 -2 266 360 77 24 chr9 44766148 44766317 -73096310 + MIR3 SINE MIR 15 190 -66 211 304 130 22 chr9 44766689 44766781 -73095846 + L2 LINE L2 3170 3271 -1 1443 219 78 3 chr9 44767100 44767470 -73095157 - L1MB7 LINE L1 -23 6161 5764 217 348 214 0 chr9 44767678 44767767 -73094860 - L2 LINE L2 -16 3256 3149 715 201 55 0 chr9 44767767 44767931 -73094696 - MIR SINE MIR 0 262 90 393 337 100 40 chr9 44767967 44768466 -73094161 - L2 LINE L2 -888 2426 1898 3756 147 2 0 chr9 44768568 44769153 -73093474 + L1PA11 LINE L1 3972 4557 -1589 4859 107 32 27 chr9 44770433 44771724 -73090903 + L1PA11 LINE L1 4548 5843 -331 332 306 111 37 chr9 44772061 44772332 -73090295 + L2 LINE L2 3023 3313 0 1520 62 0 0 chr9 44772773 44772951 -73089676 - L1PA7 LINE L1 -6 6148 5971 181 333 70 26 chr9 44773160 44773316 -73089311 + L2 LINE L2 2740 2902 -412 1382 144 11 49 chr9 44773498 44773761 -73088866 - AluJo SINE Alu -19 293 41 191 174 14 116 chr9 44773761 44773830 -73088797 + L2 LINE L2 3159 3220 -93 3805 187 34 14 chr9 44774154 44774998 -73087629 + L1MB1 LINE L1 5297 6168 0 17681 43 3 0 chr9 44775791 44778048 -73084579 + L1P1 LINE L1 3237 5500 -655 1615 134 4 4 chr9 44778156 44778395 -73084232 + AluSg/x SINE Alu 70 308 -4 182 36 0 36 chr9 44778395 44778423 -73084204 + (GGA)n Simple_repeat Simple_repeat 2 28 0 1950 146 3 0 chr9 44778429 44778716 -73083911 - AluSx SINE Alu -24 288 1 2084 114 27 129 chr9 44778884 44779287 -73083340 - THE1B LTR MaLR -2 362 1 1688 150 68 37 chr9 44779838 44780218 -73082409 + L1MB3 LINE L1 5572 5963 -220 471 325 188 6 chr9 44780595 44780915 -73081712 + L1MC4a LINE L1 5531 5908 -1900 420 97 0 0 chr9 44782270 44782332 -73080295 + (CA)n Simple_repeat Simple_repeat 1 62 0 478 258 201 13 chr9 44783304 44783463 -73079164 + MIR SINE MIR 8 196 -66 411 246 138 66 chr9 44783993 44784413 -73078214 - L1PA8A LINE L1 -688 5443 4996 1040 225 122 39 chr9 44784581 44784967 -73077660 - MLT1J2 LTR MaLR -31 419 2 616 274 13 51 chr9 44784967 44785201 -73077426 - L1M4 LINE L1 -1307 4839 4615 305 158 18 35 chr9 44785472 44785529 -73077098 - LTR40a LTR ERVL -450 69 14 2127 106 0 7 chr9 44785625 44785959 -73076668 - AluSx SINE Alu 0 312 1 435 157 0 116 chr9 44786473 44786594 -73076033 + L1M4 LINE L1 4948 5054 -1092 6130 134 56 6 chr9 44786954 44788774 -73073853 + L1PBa LINE L1 6 2060 -4803 232 338 0 0 chr9 44789904 44789972 -73072655 + L2 LINE L2 3203 3270 -2 690 206 0 14 chr9 44790886 44791027 -73071600 - MLT1A1 LTR MaLR 0 365 227 9512 30 0 1 chr9 44791178 44793011 -73069616 + L1PA3 LINE L1 4321 6152 -3 3751 132 9 9 chr9 44793039 44793608 -73069019 + Tigger1 DNA MER2_type 1100 1668 -750 246 285 101 39 chr9 44844091 44844298 -73018329 + MLT1K LTR MaLR 367 586 -2 2189 115 3 7 chr9 44844677 44844981 -73017646 + AluSx SINE Alu 1 303 -9 584 230 59 87 chr9 44845459 44845871 -73016756 - MLT1L LTR MaLR -33 565 111 2137 136 3 0 chr9 44846069 44846476 -73016151 - AluSx SINE Alu 0 408 1 239 235 0 0 chr9 44846476 44846527 -73016100 - MER5A DNA MER1_type -113 76 26 739 261 12 0 chr9 44846557 44846718 -73015909 - MER5B DNA MER1_type -14 164 2 186 250 60 90 chr9 44847722 44847822 -73014805 - MIR SINE MIR -89 119 23 240 325 12 0 chr9 44847923 44848003 -73014624 - MIR SINE MIR -61 147 67 389 272 74 36 chr9 44848221 44848530 -73014097 - L1MC5 LINE L1 -140 7821 7501 826 212 24 28 chr9 44848714 44848999 -73013628 + L1PBa LINE L1 2719 2994 -3868 420 299 58 75 chr9 44849106 44849260 -73013367 - L1MC4 LINE L1 -188 7854 7706 1612 159 12 8 chr9 44849260 44849512 -73013115 - AluJo SINE Alu -19 293 41 420 299 58 75 chr9 44849512 44849635 -73012992 - L1MC4 LINE L1 -336 7706 7582 284 219 81 16 chr9 44849656 44849779 -73012848 - L1MC5 LINE L1 -498 7463 7333 1843 195 3 3 chr9 44849780 44850139 -73012488 - MLT1A1 LTR MaLR -6 359 1 229 264 42 0 chr9 44850139 44850211 -73012416 - L1MC5 LINE L1 -630 7331 7257 * 460 266 48 31 chr9 44850209 44850645 -73011982 - L1MC4 LINE L1 -646 7396 6960 2305 115 0 3 chr9 44851189 44851502 -73011125 - AluSx SINE Alu 0 312 1 1093 147 34 34 chr9 44851553 44851757 -73010870 + MER3 DNA MER1_type 2 205 -4 280 167 0 61 chr9 44852020 44852086 -73010541 - MER4D LTR ERV1 -810 62 1 23 0 0 0 chr9 44854020 44854043 -73008584 + AT_rich Low_complexity Low_complexity 1 23 0 506 267 158 38 chr9 44854296 44854873 -73007754 + L1ME4a LINE L1 5379 6024 -97 502 250 13 58 chr9 44854998 44855154 -73007473 + MIR SINE MIR 49 197 -65 1783 176 7 7 chr9 44856522 44856828 -73005799 - AluJo SINE Alu -6 306 1 310 188 38 0 chr9 44856929 44857009 -73005618 + L1ME4a LINE L1 5774 5856 -265 294 316 0 0 chr9 44857108 44857187 -73005440 - MIR SINE MIR -121 141 63 193 315 0 0 chr9 44859486 44859540 -73003087 - MIR SINE MIR -68 140 87 796 259 80 11 chr9 44859721 44859984 -73002643 + MLT1C LTR MaLR 187 467 0 909 223 42 11 chr9 44860008 44860268 -73002359 - MLT1C LTR MaLR 0 467 200 1426 156 8 0 chr9 44860268 44860505 -73002122 - ERVL LTR ERVL -1363 4401 4163 2486 158 15 0 chr9 44860516 44860926 -73001701 - MSTB LTR MaLR -10 416 1 836 144 56 12 chr9 44860926 44861086 -73001541 - ERVL LTR ERVL -1598 4166 4000 502 251 73 73 chr9 44861599 44861969 -73000658 - MLT1J2 LTR MaLR -43 407 59 220 316 53 0 chr9 44862133 44862228 -73000399 + L2 LINE L2 3208 3307 -6 254 313 48 0 chr9 44862310 44862393 -73000234 + L2 LINE L2 2395 2481 -833 305 135 0 0 chr9 44862402 44862454 -73000173 - MLT1F LTR MaLR -1 541 490 427 107 13 0 chr9 44862459 44862534 -73000093 - MLT1F LTR MaLR -185 357 282 456 232 187 0 chr9 44862622 44862777 -72999850 - L2 LINE L2 0 3313 3130 363 254 31 0 chr9 44862821 44862951 -72999676 - MLT1K LTR MaLR -111 431 298 957 202 59 4 chr9 44863053 44863291 -72999336 + L1 LINE L1 4917 5167 -979 28 29 0 0 chr9 44863403 44863438 -72999189 + AT_rich Low_complexity Low_complexity 1 35 0 1330 168 69 0 chr9 44863983 44864286 -72998341 - MER33 DNA MER1_type 0 324 1 189 0 0 0 chr9 44864495 44864516 -72998111 + (A)n Simple_repeat Simple_repeat 1 21 0 305 269 25 67 chr9 44864628 44864747 -72997880 - MIR SINE MIR -62 146 33 407 75 30 0 chr9 44866993 44867060 -72995567 - L1MB4 LINE L1 0 6180 6112 3059 238 124 41 chr9 44868608 44869989 -72992638 - HAL1 LINE L1 -19 2488 993 3281 186 30 14 chr9 44869999 44870693 -72991934 - L1ME1 LINE L1 -5 6161 5457 788 247 57 4 chr9 44870696 44870959 -72991668 - HAL1 LINE L1 -1507 1000 724 676 339 25 7 chr9 44871049 44871329 -72991298 - MLT1K LTR MaLR -302 286 2 289 319 57 93 chr9 44871409 44871795 -72990832 + L2 LINE L2 2892 3263 -9 279 180 0 0 chr9 44872089 44872139 -72990488 + L2 LINE L2 3255 3304 -9 23 0 0 0 chr9 44872700 44872723 -72989904 + AT_rich Low_complexity Low_complexity 1 23 0 982 260 45 4 chr9 44873353 44873595 -72989032 + MIR SINE MIR 1 252 -10 188 268 113 14 chr9 44873709 44873780 -72988847 + MIR SINE MIR 133 210 -52 259 145 72 0 chr9 44874049 44874118 -72988509 + (TA)n Simple_repeat Simple_repeat 1 74 0 948 200 0 12 chr9 44874221 44874391 -72988236 + AluJo SINE Alu 1 168 -144 2242 228 74 3 chr9 44874392 44875011 -72987616 + L1ME2 LINE L1 5491 6153 -11 1130 139 0 44 chr9 44875072 44875252 -72987375 + AluSp SINE Alu 131 302 -11 1797 183 7 10 chr9 44875379 44875679 -72986948 - AluJo SINE Alu -13 299 1 2316 206 103 39 chr9 44875680 44876531 -72986096 - L1ME1 LINE L1 -945 5201 4296 535 267 6 42 chr9 44876899 44877064 -72985563 - MIR SINE MIR -64 198 40 254 352 95 57 chr9 44878326 44878641 -72983986 - L2 LINE L2 0 3272 2946 538 253 49 48 chr9 44879057 44879468 -72983159 - LTR33 LTR ERVL -4 517 38 431 290 26 61 chr9 44880069 44880472 -72982155 - L1MC/D LINE L1 -843 5516 5254 260 399 110 22 chr9 44880568 44880969 -72981658 + L2 LINE L2 2315 2750 -564 184 307 104 50 chr9 44881061 44881263 -72981364 + L2 LINE L2 2835 3047 -225 605 188 6 111 chr9 44882553 44882643 -72979984 + L1ME1 LINE L1 6000 6098 -68 315 0 0 0 chr9 44882643 44882678 -72979949 + (TG)n Simple_repeat Simple_repeat 2 36 0 605 188 6 111 chr9 44882678 44882728 -72979899 + L1ME1 LINE L1 6098 6120 -46 2310 96 0 3 chr9 44882728 44883029 -72979598 + AluSx SINE Alu 1 300 -12 605 188 6 111 chr9 44883029 44883068 -72979559 + L1ME1 LINE L1 6120 6161 -5 2932 107 5 2 chr9 44883870 44884263 -72978364 + MER1A DNA MER1_type 135 528 -1 339 254 107 8 chr9 44884312 44884434 -72978193 - MIR SINE MIR -96 166 33 183 139 0 0 chr9 44884509 44884545 -72978082 + (TGGGGG)n Simple_repeat Simple_repeat 6 41 0 1968 137 0 7 chr9 44884869 44885176 -72977451 - AluSx SINE Alu 0 305 1 314 291 91 91 chr9 44885555 44886049 -72976578 - MLT1K LTR MaLR -2 586 93 297 191 38 30 chr9 44886339 44886470 -72976157 + CT-rich Low_complexity Low_complexity 1 132 0 324 302 0 0 chr9 44886890 44886976 -72975651 + MIR SINE MIR 28 113 -149 3008 108 47 0 chr9 44886980 44887389 -72975238 - MSTC LTR MaLR 0 428 1 205 217 181 36 chr9 44887390 44887418 -72975209 + MIR SINE MIR 168 191 -71 606 28 0 0 chr9 44887418 44887490 -72975137 + (TA)n Simple_repeat Simple_repeat 1 72 0 205 217 181 36 chr9 44887490 44887544 -72975083 + MIR SINE MIR 191 262 0 1687 159 18 18 chr9 44887914 44888190 -72974437 - AluJo SINE Alu -36 276 1 6192 30 0 1 chr9 44889116 44889850 -72972777 - L1PA3 LINE L1 -777 5369 4637 7419 16 1 0 chr9 44889850 44890644 -72971983 + L1PA3 LINE L1 5353 6154 -1 1073 264 22 47 chr9 44890742 44891144 -72971483 - MLT1J LTR MaLR -115 396 5 248 70 23 0 chr9 44891302 44891345 -72971282 + (GGA)n Simple_repeat Simple_repeat 2 45 0 239 226 97 0 chr9 44891390 44891452 -72971175 - MIR SINE MIR -87 175 108 591 262 153 35 chr9 44891540 44891853 -72970774 - MLT1L LTR MaLR -15 600 251 268 227 15 15 chr9 44891902 44891968 -72970659 - MLT1L LTR MaLR -532 83 18 692 112 0 86 chr9 44892014 44892130 -72970497 + FLAM_A SINE Alu 16 121 -21 237 258 11 11 chr9 44892134 44892223 -72970404 - L1MC4 LINE L1 -1339 6703 6615 225 0 0 0 chr9 44892242 44892267 -72970360 + (TA)n Simple_repeat Simple_repeat 1 25 0 247 343 128 64 chr9 44892378 44892582 -72970045 - L2 LINE L2 -10 3262 3046 184 351 85 0 chr9 44892638 44892732 -72969895 + L2 LINE L2 3189 3290 -23 2882 118 42 24 chr9 44894652 44895076 -72967551 + MSTB1 LTR MaLR 1 432 0 204 347 49 91 chr9 44895325 44895590 -72967037 - L2 LINE L2 -25 3247 2994 541 0 14 14 chr9 44896543 44896613 -72966014 + (TCTA)n Simple_repeat Simple_repeat 1 70 0 1012 224 39 60 chr9 44897080 44897361 -72965266 + LTR16C LTR ERVL 216 490 -1 630 219 48 80 chr9 44902074 44902215 -72960412 + LTR33A LTR ERVL 340 476 -47 2159 106 3 0 chr9 44902215 44902526 -72960101 + AluSx SINE Alu 1 312 0 630 219 48 80 chr9 44902526 44902570 -72960057 + LTR33A LTR ERVL 476 520 -3 22 56 0 0 chr9 44902792 44902828 -72959799 + AT_rich Low_complexity Low_complexity 1 36 0 36 23 0 0 chr9 44902848 44902891 -72959736 + AT_rich Low_complexity Low_complexity 1 43 0 254 0 83 0 chr9 44903210 44903246 -72959381 + T-rich Low_complexity Low_complexity 2 40 0 829 112 40 0 chr9 44903246 44903371 -72959256 - AluJb SINE Alu -182 130 1 5417 86 1 3 chr9 44903510 44904207 -72958420 - L1PB1 LINE L1 -3 6148 5453 525 80 0 0 chr9 44904409 44904484 -72958143 + (TC)n Simple_repeat Simple_repeat 2 76 0 244 306 35 0 chr9 44904882 44904967 -72957660 + L3 LINE CR1 1143 1230 -347 2007 189 2 4 chr9 44905006 44905361 -72957266 - MLT1A1 LTR MaLR 0 365 15 475 214 84 13 chr9 44905410 44905564 -72957063 + MER103 DNA DNA 2 166 0 281 259 14 116 chr9 44906989 44907136 -72955491 + MIR SINE MIR 86 217 -45 419 226 19 118 chr9 44907260 44907472 -72955155 - L1ME LINE L1 -330 5791 5601 190 330 147 9 chr9 44907650 44907759 -72954868 + L2 LINE L2 3144 3267 -5 212 250 118 13 chr9 44907820 44907896 -72954731 - L2 LINE L2 -3 3269 3186 425 300 0 0 chr9 44909709 44909809 -72952818 + MIR SINE MIR 48 147 -115 261 264 35 11 chr9 44909914 44910001 -72952626 + MIR SINE MIR 172 260 -2 294 327 74 12 chr9 44910464 44910626 -72952001 - L3b LINE CR1 -90 1493 1322 516 256 37 100 chr9 44912863 44912967 -72949660 - L1ME4a LINE L1 -94 6027 5918 1948 150 3 13 chr9 44912967 44913280 -72949347 - AluSx SINE Alu -2 310 1 516 256 37 100 chr9 44913280 44913393 -72949234 - L1ME4a LINE L1 -203 5918 5799 2187 109 0 3 chr9 44913393 44913686 -72948941 - AluSx SINE Alu -20 292 1 516 256 37 100 chr9 44913686 44913925 -72948702 - L1ME4a LINE L1 -322 5799 5599 185 296 217 26 chr9 44913980 44914095 -72948532 + MIR3 SINE MIR 38 174 -34 2370 109 0 0 chr9 44914814 44915125 -72947502 + AluSx SINE Alu 1 311 -1 1767 134 69 0 chr9 44915304 44915580 -72947047 + AluSx SINE Alu 1 295 -17 21 71 0 0 chr9 44915677 44915719 -72946908 + AT_rich Low_complexity Low_complexity 1 42 0 565 276 92 81 chr9 44915791 44916027 -72946600 + L2 LINE L2 2922 3165 -148 2758 198 13 13 chr9 44916027 44916583 -72946044 - L1MB8 LINE L1 -2 6176 5621 565 276 92 81 chr9 44916583 44916705 -72945922 + L2 LINE L2 3165 3284 -29 227 277 196 31 chr9 44917540 44917672 -72944955 - MIR SINE MIR -65 143 1 288 70 0 0 chr9 44918346 44918389 -72944238 + (CA)n Simple_repeat Simple_repeat 2 44 0 728 257 32 23 chr9 44918494 44918712 -72943915 + Charlie8 DNA MER1_type 70 289 -2128 2267 101 7 3 chr9 44918785 44919093 -72943534 + AluSx SINE Alu 1 309 -3 295 340 0 42 chr9 44919149 44919293 -72943334 - MER5A DNA MER1_type -3 186 49 303 369 37 37 chr9 44919298 44919566 -72943061 + L1ME1 LINE L1 21 288 -6252 1602 195 0 11 chr9 44919860 44920147 -72942480 + AluJb SINE Alu 1 284 -28 350 131 40 0 chr9 44920147 44920246 -72942381 + (TA)n Simple_repeat Simple_repeat 1 103 0 209 135 27 0 chr9 44920282 44920319 -72942308 + (TA)n Simple_repeat Simple_repeat 2 39 0 22 0 0 0 chr9 44920394 44920416 -72942211 + AT_rich Low_complexity Low_complexity 1 22 0 392 191 11 0 chr9 44920425 44920514 -72942113 + (TA)n Simple_repeat Simple_repeat 2 91 0 7251 215 73 52 chr9 44920780 44923060 -72939567 + L1ME1 LINE L1 2807 5145 -1395 1714 118 87 0 chr9 44923060 44923314 -72939313 - AluSq SINE Alu -9 304 29 7251 215 73 52 chr9 44923314 44923480 -72939147 + L1ME1 LINE L1 5145 5306 -1234 3199 221 75 10 chr9 44923489 44924299 -72938328 + L1ME1 LINE L1 5689 6551 -9 213 121 0 0 chr9 44924824 44924857 -72937770 + (TTTC)n Simple_repeat Simple_repeat 2 34 0 349 301 30 60 chr9 44925656 44925822 -72936805 + MIR3 SINE MIR 17 177 -31 494 223 11 128 chr9 44925935 44926134 -72936493 - MER5A DNA MER1_type 0 189 5 443 250 194 13 chr9 44928192 44928396 -72934231 + MIR SINE MIR 24 262 0 389 355 14 12 chr9 44928552 44928702 -72933925 + MIR SINE MIR 2 153 -55 189 305 147 11 chr9 44929465 44929560 -72933067 - L2 LINE L2 -5 3267 3160 2244 157 6 3 chr9 44929706 44930056 -72932571 - MLT1A1 LTR MaLR -13 352 2 269 304 6 82 chr9 44930388 44930559 -72932068 - MIR3 SINE MIR -45 163 6 260 302 23 47 chr9 44930549 44930678 -72931949 - MIR SINE MIR -56 152 27 * 242 73 24 0 chr9 44931026 44931067 -72931560 + (CAAAAA)n Simple_repeat Simple_repeat 2 43 0 277 330 10 19 chr9 44931077 44931180 -72931447 + MER5A DNA MER1_type 63 164 -25 189 175 0 0 chr9 44931866 44931906 -72930721 + (CA)n Simple_repeat Simple_repeat 1 40 0 469 259 0 79 chr9 44932587 44932726 -72929901 + MER91B DNA MER1_type 3 130 -60 1640 153 33 18 chr9 44934126 44934401 -72928226 - AluJo SINE Alu -19 293 15 525 307 105 14 chr9 44934746 44935042 -72927585 + LTR33 LTR ERVL 1 323 -198 409 220 34 25 chr9 44935068 44935186 -72927441 + LTR33 LTR ERVL 403 521 0 339 283 82 0 chr9 44935374 44935527 -72927100 - MIR SINE MIR -65 143 25 411 301 59 61 chr9 44936749 44937072 -72925555 - L1ME LINE L1 -369 5793 5470 1994 95 3 32 chr9 44937109 44937392 -72925235 - AluY SINE Alu -32 279 5 2202 130 0 3 chr9 44937397 44937704 -72924923 - AluSx SINE Alu -6 306 1 240 222 171 17 chr9 44937709 44937826 -72924801 - L1ME LINE L1 -680 5482 5348 337 274 53 16 chr9 44937831 44938021 -72924606 - L1ME LINE L1 -832 5314 5118 183 80 0 0 chr9 44938627 44938652 -72923975 + (CAAAA)n Simple_repeat Simple_repeat 5 29 0 1500 244 29 21 chr9 44939979 44940364 -72922263 - L1ME3A LINE L1 -6 6164 5777 822 228 67 57 chr9 44940377 44940741 -72921886 - L1ME3A LINE L1 -591 5571 5208 289 280 90 10 chr9 44941045 44941145 -72921482 - L2 LINE L2 -10 3262 3155 939 260 76 48 chr9 44941786 44942220 -72920407 - MLT1J1 LTR MaLR 0 446 1 1022 206 106 97 chr9 44942225 44942575 -72920052 + MLT1A1 LTR MaLR 1 353 -12 286 374 17 9 chr9 44944275 44944390 -72918237 + MIR3 SINE MIR 3 118 -90 396 262 0 0 chr9 44944390 44944493 -72918134 - L1ME3A LINE L1 -198 5972 5870 541 159 0 11 chr9 44944493 44944581 -72918046 - Tigger5 DNA MER2_type 0 2323 2237 494 179 12 0 chr9 44944592 44944676 -72917951 + Tigger5 DNA MER2_type 1 85 -2238 349 235 0 0 chr9 44944700 44944768 -72917859 - Tigger5 DNA MER2_type -5 2318 2251 279 226 0 0 chr9 44944739 44944792 -72917835 - Tigger5 DNA MER2_type -2270 53 1 * 571 215 117 0 chr9 44944794 44944957 -72917670 - L1ME3A LINE L1 -301 5869 5688 1321 239 48 48 chr9 44944988 44945382 -72917245 - LTR16A LTR ERVL -2 448 55 274 238 0 0 chr9 44945486 44945549 -72917078 - L1ME3A LINE L1 -566 5604 5542 585 274 25 65 chr9 44946196 44946473 -72916154 - L1MC5 LINE L1 -35 7926 7661 2197 250 37 45 chr9 44946484 44947747 -72914880 - L1MCc LINE L1 -4818 2123 654 1363 244 81 12 chr9 44947911 44948317 -72914310 - L1MCc LINE L1 -5983 440 7 508 193 55 21 chr9 44948377 44948522 -72914105 - L1MC5 LINE L1 -385 7576 7427 23 54 0 0 chr9 44948643 44948680 -72913947 + AT_rich Low_complexity Low_complexity 1 37 0 1597 126 8 0 chr9 44948815 44949053 -72913574 - L1PA14 LINE L1 -11 6150 5911 261 269 0 45 chr9 44949315 44949382 -72913245 - L2 LINE L2 -8 3264 3201 476 200 55 21 chr9 44949457 44949602 -72913025 - L1MC5 LINE L1 -385 7576 7427 252 216 68 14 chr9 44949612 44949686 -72912941 - L1MCc LINE L1 -6339 84 7 1824 151 7 3 chr9 44949710 44949995 -72912632 - AluSx SINE Alu -26 286 1 210 354 192 0 chr9 44950443 44950542 -72912085 + L2 LINE L2 3154 3271 -1 239 276 13 0 chr9 44950549 44950625 -72912002 + GA-rich Low_complexity Low_complexity 3 79 0 25 51 0 0 chr9 44950806 44950845 -72911782 + AT_rich Low_complexity Low_complexity 1 39 0 26 0 0 0 chr9 44950932 44950958 -72911669 + AT_rich Low_complexity Low_complexity 1 26 0 639 168 0 0 chr9 44952310 44952411 -72910216 + FLAM_A SINE Alu 34 134 -8 2188 112 3 0 chr9 44952420 44952705 -72909922 + AluSx SINE Alu 6 291 -21 350 311 96 34 chr9 44952872 44953081 -72909546 - MIR SINE MIR -18 244 23 280 339 108 27 chr9 44953180 44953366 -72909261 + MIR3 SINE MIR 2 202 -6 334 252 155 10 chr9 44953431 44953534 -72909093 - L2 LINE L2 0 3272 3155 216 179 0 0 chr9 44953855 44953894 -72908733 + (ATCG)n Simple_repeat Simple_repeat 2 40 0 458 294 185 0 chr9 44954195 44954379 -72908248 + MIR SINE MIR 12 229 -33 633 220 0 0 chr9 44954476 44954585 -72908042 + MER81 DNA DNA 6 114 0 739 263 0 45 chr9 44954825 44955004 -72907623 - MER5B DNA MER1_type -1 177 7 659 186 36 0 chr9 44955598 44955738 -72906889 + L1MC1 LINE L1 5800 5944 -389 2101 109 0 64 chr9 44955783 44956112 -72906515 - AluSq SINE Alu -5 308 1 311 225 115 60 chr9 44956163 44956345 -72906282 - L1ME4a LINE L1 -57 6064 5873 703 138 95 0 chr9 44956361 44956477 -72906150 + L1PB4 LINE L1 6027 6153 -3 1330 146 0 15 chr9 44956600 44956806 -72905821 + AluJb SINE Alu 87 289 -23 260 208 13 65 chr9 44956878 44956955 -72905672 - L1ME4a LINE L1 -482 5639 5567 483 275 214 6 chr9 44958520 44958698 -72903929 - MIR SINE MIR -31 231 17 254 256 12 37 chr9 44958744 44958826 -72903801 - MIR SINE MIR -116 146 67 380 319 59 7 chr9 44959101 44959236 -72903391 + L2 LINE L2 2918 3059 -254 1260 229 78 43 chr9 44959236 44959658 -72902969 - MLT1C LTR MaLR 0 467 16 525 248 48 53 chr9 44959723 44959929 -72902698 + L2 LINE L2 3109 3313 0 2612 10 38 0 chr9 44960431 44960720 -72901907 + AluYa5 SINE Alu 1 300 -11 2142 112 20 0 chr9 44961201 44961524 -72901103 + AluSx SINE Alu 1 312 0 302 259 12 12 chr9 44963815 44963900 -72898727 + CT-rich Low_complexity Low_complexity 4 88 0 780 269 85 55 chr9 44963916 44964528 -72898099 - L2 LINE L2 -54 3259 2624 407 278 46 33 chr9 44964877 44965028 -72897599 - MIR3 SINE MIR -15 193 41 1741 172 0 25 chr9 44965029 44965320 -72897307 + AluJb SINE Alu 1 285 -27 333 0 0 0 chr9 44965320 44965357 -72897270 + (CA)n Simple_repeat Simple_repeat 2 38 0 1741 172 0 25 chr9 44965357 44965385 -72897242 + AluJb SINE Alu 285 312 0 2343 107 86 3 chr9 44966093 44966429 -72896198 + THE1B LTR MaLR 1 364 0 221 200 0 0 chr9 44966955 44966995 -72895632 - L2 LINE L2 -3 3310 3271 3623 198 20 10 chr9 44967039 44967735 -72894892 - L1MB8 LINE L1 -5 6173 5471 400 338 61 14 chr9 44967931 44968144 -72894483 + MIR SINE MIR 34 256 -6 372 43 0 0 chr9 44968230 44968276 -72894351 + (CA)n Simple_repeat Simple_repeat 1 46 0 691 304 78 13 chr9 44968607 44968837 -72893790 + MIR SINE MIR 13 257 -5 225 0 0 0 chr9 44970201 44970226 -72892401 + (TTG)n Simple_repeat Simple_repeat 2 26 0 1972 109 4 7 chr9 44970231 44970507 -72892120 - AluSx SINE Alu 0 312 38 2292 94 3 28 chr9 44971113 44971433 -72891194 - AluSx SINE Alu 0 312 1 454 348 50 74 chr9 44971841 44972140 -72890487 - L2 LINE L2 -1 3271 2980 821 155 0 70 chr9 44972498 44972640 -72889987 + FLAM_A SINE Alu 1 132 -1 328 284 100 68 chr9 44973307 44973497 -72889130 + MER91A DNA MER1_type 1 196 0 24 0 0 0 chr9 44974042 44974066 -72888561 + AT_rich Low_complexity Low_complexity 1 24 0 205 359 16 0 chr9 44974079 44974143 -72888484 - L2 LINE L2 -3 3269 3205 276 267 118 44 chr9 44974240 44974375 -72888252 + MIR3 SINE MIR 37 181 -27 427 235 76 23 chr9 44974384 44974516 -72888111 - MIR SINE MIR -73 189 51 198 282 39 68 chr9 44975157 44975260 -72887367 - MIR3 SINE MIR -13 195 96 657 230 14 0 chr9 44975269 44975408 -72887219 + MER5B DNA MER1_type 20 160 -18 434 318 8 23 chr9 44975764 44975893 -72886734 - L2 LINE L2 -3 3269 3143 1159 228 9 13 chr9 44976661 44976885 -72885742 - MER58A DNA MER1_type 0 224 2 285 268 93 10 chr9 44978026 44978123 -72884504 + L2 LINE L2 3168 3272 0 1581 137 58 50 chr9 44978821 44979164 -72883463 + MER4A LTR ERV1 1 346 -318 667 139 192 82 chr9 44979169 44979422 -72883205 + MER4C LTR ERV1 153 444 -21 261 0 0 0 chr9 44981069 44981098 -72881529 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 24 0 0 0 chr9 44982833 44982857 -72879770 + AT_rich Low_complexity Low_complexity 1 24 0 2042 130 3 0 chr9 44983454 44983769 -72878858 - AluSx SINE Alu 0 316 1 1997 140 77 3 chr9 44983982 44984318 -72878309 - MER47A DNA MER2_type 0 366 6 573 256 56 31 chr9 44984513 44984673 -72877954 - MER5B DNA MER1_type 0 178 15 479 174 54 0 chr9 44984727 44984819 -72877808 - MER5A DNA MER1_type -83 106 10 370 231 31 128 chr9 44984908 44985103 -72877524 + L2 LINE L2 2248 2423 -891 991 267 160 8 chr9 44985103 44985616 -72877011 + L2 LINE L2 2701 3289 -24 2499 242 49 65 chr9 44986070 44986860 -72875767 - MER21B LTR ERV1 -77 786 9 2502 134 9 59 chr9 44986861 44987285 -72875342 + MER57A LTR ERV1 1 403 0 381 349 86 4 chr9 44987956 44988211 -72874416 + L3b LINE CR1 1122 1397 -186 26 0 0 0 chr9 44988357 44988383 -72874244 + AT_rich Low_complexity Low_complexity 1 26 0 2672 188 33 4 chr9 44990256 44990768 -72871859 - MER74A LTR ERVL -4 554 28 2499 70 0 0 chr9 44990925 44991227 -72871400 - AluY SINE Alu -9 302 1 470 230 152 52 chr9 44991245 44991393 -72871234 + MIR SINE MIR 53 226 -36 5548 122 40 37 chr9 44991393 44992262 -72870365 - MER4D LTR ERV1 0 872 1 470 230 152 52 chr9 44992262 44992304 -72870323 + MIR SINE MIR 226 262 0 1644 97 0 0 chr9 44992322 44992528 -72870099 - AluSc SINE Alu -6 303 98 1203 217 108 22 chr9 44993088 44993146 -72869481 - MER58B DNA MER1_type -2079 341 289 1982 168 12 90 chr9 44993146 44993569 -72869058 - MLT1B LTR MaLR 0 390 1 1203 217 108 22 chr9 44993569 44993824 -72868803 - MER58B DNA MER1_type -2131 289 1 731 176 162 0 chr9 44994805 44994953 -72867674 + MER5A DNA MER1_type 12 183 -6 702 191 0 23 chr9 44994961 44995092 -72867535 + FLAM_A SINE Alu 1 128 -5 2114 116 0 10 chr9 44995108 44995400 -72867227 + AluSx SINE Alu 13 301 -11 447 305 80 42 chr9 44996709 44996948 -72865679 - MIR SINE MIR 0 262 15 2231 102 0 37 chr9 44997637 44997960 -72864667 - AluSp SINE Alu -2 311 1 26 30 0 0 chr9 44998207 44998240 -72864387 + AT_rich Low_complexity Low_complexity 1 33 0 453 264 40 0 chr9 44998359 44998484 -72864143 - Charlie8 DNA MER1_type -2204 213 84 294 209 192 39 chr9 44999230 44999464 -72863163 + L1ME LINE L1 716 985 -5085 532 261 80 9 chr9 44999542 44999792 -72862835 + L1ME LINE L1 1013 1310 -4862 939 288 119 36 chr9 44999804 45000365 -72862262 + L1ME LINE L1 1378 1891 -4189 343 134 0 110 chr9 45000365 45000447 -72862180 + L1PA10 LINE L1 6096 6168 0 939 288 119 36 chr9 45000447 45000565 -72862062 + L1ME LINE L1 1891 1998 -4082 1600 193 44 0 chr9 45000565 45000674 -72861953 + AluJo SINE Alu 11 114 -198 378 0 0 0 chr9 45000674 45000716 -72861911 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 1600 193 44 0 chr9 45000716 45000880 -72861747 + AluJo SINE Alu 114 296 -16 939 288 119 36 chr9 45000880 45001379 -72861248 + L1ME LINE L1 1998 2680 -3400 333 233 25 42 chr9 45001422 45001542 -72861085 + L1ME LINE L1 3837 3954 -2126 666 251 84 5 chr9 45001867 45002058 -72860569 + MIR SINE MIR 40 245 -17 1652 138 0 0 chr9 45002749 45002980 -72859647 + AluSx SINE Alu 1 231 -81 863 211 50 6 chr9 45004057 45004237 -72858390 + MER5A DNA MER1_type 1 188 -1 663 154 101 53 chr9 45004913 45005082 -72857545 + MER96B DNA MER1_type? 3 179 -238 386 344 12 25 chr9 45005602 45005765 -72856862 + MIR3 SINE MIR 42 202 -6 256 270 202 0 chr9 45006049 45006138 -72856489 - L2 LINE L2 0 3313 3207 395 244 0 0 chr9 45006170 45006248 -72856379 + Tigger3(Golem) DNA MER2_type 3 80 -2949 859 109 0 0 chr9 45006379 45006489 -72856138 + Tigger3(Golem) DNA MER2_type 2920 3029 0 2533 74 0 0 chr9 45006552 45006861 -72855766 + AluY SINE Alu 2 310 -1 1729 172 26 13 chr9 45009005 45009313 -72853314 - AluJo SINE Alu 0 312 1 758 205 246 13 chr9 45009313 45009630 -72852997 + MER113 DNA MER1_type? 85 475 -46 459 0 0 0 chr9 45009941 45009992 -72852635 + (TG)n Simple_repeat Simple_repeat 1 51 0 246 291 100 61 chr9 45012466 45012696 -72849931 - L2 LINE L2 0 3313 3075 264 371 67 28 chr9 45013006 45013184 -72849443 - L3b LINE CR1 -150 1433 1249 1947 150 13 3 chr9 45013194 45013500 -72849127 + AluSx SINE Alu 1 309 -3 2234 107 20 3 chr9 45013545 45013844 -72848783 + AluSg SINE Alu 1 304 -6 465 296 56 6 chr9 45016705 45016867 -72845760 + MIR SINE MIR 82 251 -11 302 180 0 16 chr9 45016883 45016944 -72845683 - MIR SINE MIR -62 146 87 22 35 0 0 chr9 45016998 45017027 -72845600 + AT_rich Low_complexity Low_complexity 1 29 0 3326 177 91 9 chr9 45020097 45020768 -72841859 - L1MB2 LINE L1 0 6171 5446 1687 229 89 35 chr9 45022986 45023471 -72839156 + MLT1E LTR MaLR 15 525 -68 231 186 0 0 chr9 45023621 45023664 -72838963 + MLT1E LTR MaLR 521 563 -4 199 341 24 0 chr9 45023683 45023765 -72838862 + MIR SINE MIR 178 261 -1 5886 80 9 1 chr9 45025341 45026127 -72836500 - L1PA13 LINE L1 -19 6144 5353 2373 82 0 7 chr9 45026946 45027249 -72835378 + AluY SINE Alu 1 301 -10 326 220 15 114 chr9 45028067 45028199 -72834428 - MER96B DNA MER1_type? -3 414 296 1896 258 42 13 chr9 45028647 45029174 -72833453 - L1MCc LINE L1 -5068 1355 814 554 221 7 34 chr9 45029356 45029505 -72833122 - L1MCc LINE L1 -6015 408 264 22 70 0 0 chr9 45030120 45030163 -72832464 + AT_rich Low_complexity Low_complexity 1 43 0 1743 239 169 27 chr9 45030494 45031305 -72831322 + L1MC4a LINE L1 5308 6233 -1575 1270 141 41 29 chr9 45031474 45031716 -72830911 + AluJb SINE Alu 24 268 -44 2009 151 0 7 chr9 45032333 45032512 -72830115 - AluJb SINE Alu -10 302 124 360 64 0 0 chr9 45032512 45032559 -72830068 + (TG)n Simple_repeat Simple_repeat 2 48 0 2009 151 0 7 chr9 45032559 45032683 -72829944 - AluJb SINE Alu -188 124 1 237 259 0 17 chr9 45033036 45033094 -72829533 - L1ME LINE L1 -195 5926 5870 219 259 98 56 chr9 45033245 45033388 -72829239 - MIR SINE MIR -28 234 86 1093 306 22 29 chr9 45033599 45034011 -72828616 - MLT1I LTR MaLR 0 409 1 202 235 98 0 chr9 45034598 45034649 -72827978 + L2 LINE L2 3217 3272 0 27 0 0 0 chr9 45035114 45035141 -72827486 + AT_rich Low_complexity Low_complexity 1 27 0 418 193 50 0 chr9 45035559 45035655 -72826972 - MER5A DNA MER1_type -84 105 4 531 310 49 13 chr9 45035695 45035921 -72826706 + MLT1L LTR MaLR 43 276 -339 227 328 0 0 chr9 45036183 45036250 -72826377 - MER112 DNA MER1_type -13 247 181 359 314 52 87 chr9 45036401 45036978 -72825649 + L2 LINE L2 2182 2738 -576 1597 162 55 0 chr9 45037016 45037287 -72825340 + AluJb SINE Alu 3 288 -24 352 359 71 39 chr9 45037339 45037748 -72824879 + L2 LINE L2 2851 3272 0 881 323 28 9 chr9 45039290 45039609 -72823018 - LTR16A LTR ERVL -6 444 120 349 252 104 0 chr9 45039629 45039744 -72822883 - LTR50 LTR ERVL -343 452 326 299 253 32 11 chr9 45039802 45039897 -72822730 - LTR50 LTR ERVL -587 208 112 332 331 14 20 chr9 45039950 45040098 -72822529 + MER102b DNA MER1_type 171 317 -24 204 103 0 0 chr9 45040967 45040996 -72821631 - MIR SINE MIR -13 249 221 240 254 0 0 chr9 45041119 45041178 -72821449 - MER113 DNA MER1_type? -125 396 338 1783 176 7 0 chr9 45041309 45041610 -72821017 - AluJo SINE Alu -9 303 1 628 223 31 49 chr9 45041610 45041757 -72820870 - MER113 DNA MER1_type? -268 253 110 1872 157 6 10 chr9 45041757 45042069 -72820558 + AluJb SINE Alu 1 311 -1 628 223 31 49 chr9 45042069 45042145 -72820482 - MER113 DNA MER1_type? -411 110 34 484 269 77 6 chr9 45042146 45042302 -72820325 + MIR SINE MIR 86 252 -10 545 174 41 158 chr9 45043164 45043270 -72819357 + MER5A DNA MER1_type 16 90 -99 2275 108 0 6 chr9 45043270 45043584 -72819043 + AluSx SINE Alu 1 312 0 545 174 41 158 chr9 45043584 45043673 -72818954 + MER5A DNA MER1_type 90 188 -1 2308 95 0 10 chr9 45043857 45044152 -72818475 - AluSx SINE Alu -20 292 1 293 258 79 11 chr9 45044593 45044682 -72817945 + L2 LINE L2 3164 3258 -14 385 243 0 37 chr9 45045006 45045113 -72817514 - L2 LINE L2 -8 3305 3203 2241 100 0 13 chr9 45045386 45045685 -72816942 + AluSg SINE Alu 1 295 -15 571 257 59 16 chr9 45046338 45046525 -72816102 + MIR SINE MIR 15 209 -53 319 257 115 0 chr9 45046625 45046738 -72815889 + MIR SINE MIR 116 241 -21 280 290 0 21 chr9 45047859 45047952 -72814675 - MIR SINE MIR -10 252 162 1254 232 82 23 chr9 45047953 45048275 -72814352 + LTR52 LTR ERVL 1 351 -70 360 0 0 0 chr9 45048275 45048315 -72814312 + (TG)n Simple_repeat Simple_repeat 1 40 0 1254 232 82 23 chr9 45048315 45048384 -72814243 + LTR52 LTR ERVL 351 415 -6 318 186 0 14 chr9 45048384 45048454 -72814173 - MIR SINE MIR -100 162 94 847 124 8 0 chr9 45048633 45048762 -72813865 - AluSp/q SINE Alu -13 300 171 1299 117 6 0 chr9 45048862 45049033 -72813594 - AluSx SINE Alu -138 174 3 669 293 11 5 chr9 45049033 45049224 -72813403 - MIR SINE MIR -66 196 5 2460 88 16 48 chr9 45050485 45050861 -72811766 - THE1B LTR MaLR 0 364 1 320 256 165 16 chr9 45050899 45051020 -72811607 - MIR3 SINE MIR -50 158 20 428 262 60 34 chr9 45051681 45051830 -72810797 - MIR SINE MIR -8 254 102 2695 144 16 29 chr9 45051960 45052181 -72810446 - L1MC3 LINE L1 -118 7667 7445 2284 81 14 0 chr9 45052181 45052478 -72810149 - AluSp SINE Alu -12 301 1 2695 144 16 29 chr9 45052478 45052741 -72809886 - L1MC3 LINE L1 -340 7445 7189 304 297 11 0 chr9 45052741 45052832 -72809795 - MLT1F1 LTR MaLR -442 125 34 1546 305 19 24 chr9 45052914 45053530 -72809097 - L1MC4a LINE L1 -1941 5867 5255 205 213 109 56 chr9 45053956 45054081 -72808546 - L2 LINE L2 -221 3051 2915 574 283 35 0 chr9 45054980 45055153 -72807474 - MIR SINE MIR -51 211 33 632 162 33 133 chr9 45055682 45055742 -72806885 + MER5A DNA MER1_type 1 65 -124 1920 189 26 0 chr9 45055742 45056086 -72806541 - L1MB5 LINE L1 -9 6165 5813 632 162 33 133 chr9 45056086 45056235 -72806392 + MER5A DNA MER1_type 65 189 0 285 279 71 84 chr9 45056877 45057031 -72805596 - L2 LINE L2 0 3272 3121 427 279 39 78 chr9 45057717 45057975 -72804652 + L1ME3A LINE L1 5663 5910 -211 2010 152 0 0 chr9 45058005 45058314 -72804313 + AluSq SINE Alu 1 309 -4 771 260 153 13 chr9 45058316 45058624 -72804003 - HsTC2 DNA Tc2 -34 1864 1514 686 291 21 33 chr9 45058753 45058994 -72803633 - HsTC2 DNA Tc2 -372 1526 1289 537 224 22 30 chr9 45059027 45059161 -72803466 - HsTC2 DNA Tc2 -1765 133 1 1889 157 7 0 chr9 45059199 45059526 -72803101 + AluSx SINE Alu 1 329 0 702 274 114 57 chr9 45060034 45060472 -72802155 + MLT1H LTR MaLR 86 548 -1 197 288 17 0 chr9 45060562 45060621 -72802006 - L2 LINE L2 -8 3305 3246 239 227 84 34 chr9 45061064 45061183 -72801444 - L2 LINE L2 -211 3061 2937 1587 98 17 38 chr9 45061743 45061978 -72800649 - MER30 DNA MER1_type 0 230 1 2364 101 0 7 chr9 45062710 45063018 -72799609 + AluSq SINE Alu 1 306 -7 10562 75 2 3 chr9 45063074 45064415 -72798212 + L1P3 LINE L1 2 1341 -5120 1557 30 5 5 chr9 45064409 45064601 -72798026 - L1PA4 LINE L1 -759 5387 5195 * 5510 61 5 29 chr9 45064601 45065386 -72797241 + L1PA4 LINE L1 5389 6155 0 228 271 193 36 chr9 45066187 45066327 -72796300 + MIR3 SINE MIR 34 195 -13 2299 99 0 43 chr9 45066372 45066561 -72796066 - AluSq SINE Alu -5 308 137 249 57 0 0 chr9 45066561 45066596 -72796031 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2299 99 0 43 chr9 45066596 45066728 -72795899 - AluSq SINE Alu -176 137 1 238 317 98 8 chr9 45066848 45066971 -72795656 - MIR SINE MIR -76 186 53 1464 129 24 108 chr9 45067206 45067538 -72795089 - L1MA2 LINE L1 0 6304 6001 1115 137 0 36 chr9 45067688 45067856 -72794771 + AluSq SINE Alu 1 162 -151 350 260 0 0 chr9 45068451 45068524 -72794103 + Charlie8 DNA MER1_type 1 73 -2344 2176 117 0 20 chr9 45070115 45070415 -72792212 + AluSx SINE Alu 1 294 -18 2619 151 12 107 chr9 45071018 45071527 -72791100 + MLT2B2 LTR ERVL 1 452 -63 1811 167 28 0 chr9 45071527 45071814 -72790813 - AluJb SINE Alu -17 295 1 2619 151 12 107 chr9 45071814 45071873 -72790754 + MLT2B2 LTR ERVL 452 515 0 2019 151 10 3 chr9 45072025 45072324 -72790303 + AluSx SINE Alu 1 301 -11 2138 135 3 0 chr9 45072649 45072960 -72789667 + AluSx SINE Alu 1 312 0 712 258 5 15 chr9 45072968 45073166 -72789461 + LTR16A1 LTR ERVL 262 457 0 461 272 8 8 chr9 45073308 45073433 -72789194 - LTR33 LTR ERVL -28 493 369 1752 176 67 3 chr9 45073850 45074196 -72788431 + L1MA8 LINE L1 5912 6279 -12 2212 101 3 0 chr9 45074540 45075020 -72787607 + AluSq SINE Alu 1 481 0 440 272 15 7 chr9 45076971 45077107 -72785520 + MIR SINE MIR 13 149 -113 1760 166 3 13 chr9 45078134 45078448 -72784179 + AluSx SINE Alu 1 311 -1 324 300 18 0 chr9 45078561 45078671 -72783956 - MIR3 SINE MIR -52 156 45 293 250 0 15 chr9 45078744 45078812 -72783815 - HAL1 LINE L1 -11 2496 2430 467 99 0 0 chr9 45078881 45078952 -72783675 - Alu SINE Alu -7 305 235 973 133 0 7 chr9 45078952 45079095 -72783532 - AluSq/x SINE Alu -171 142 1 4707 126 58 72 chr9 45079100 45080109 -72782518 + pTR5 LTR ERV1 743 2029 -409 335 222 11 16 chr9 45080109 45080216 -72782411 + LTR30 LTR ERV1 375 478 -91 1296 75 0 16 chr9 45080239 45080425 -72782202 + pTR5 LTR ERV1 209 391 -2047 1366 250 141 64 chr9 45080425 45081285 -72781342 - HAL1 LINE L1 -160 2347 1422 192 354 82 0 chr9 45081296 45081443 -72781184 - MIR SINE MIR -10 252 94 491 311 117 25 chr9 45081465 45081748 -72780879 - MLT1I LTR MaLR -19 390 82 2870 213 57 5 chr9 45081755 45082370 -72780257 - MER99 DNA DNA -1 827 181 22 35 0 0 chr9 45082508 45082537 -72780090 + AT_rich Low_complexity Low_complexity 1 29 0 327 287 75 0 chr9 45083015 45083109 -72779518 - MER99 DNA DNA -726 102 2 540 96 0 0 chr9 45083557 45083630 -72778997 + AluS SINE Alu 2 74 -239 1560 238 140 61 chr9 45083768 45084094 -72778533 + L1MC4 LINE L1 7278 7577 -465 2457 60 23 0 chr9 45084094 45084394 -72778233 + AluY SINE Alu 1 307 -4 1560 238 140 61 chr9 45084394 45084776 -72777851 + L1MC4 LINE L1 7577 8042 0 22 0 0 0 chr9 45084838 45084860 -72777767 + AT_rich Low_complexity Low_complexity 1 22 0 361 268 73 62 chr9 45085257 45085436 -72777191 - L3 LINE CR1 -26 1551 1371 485 300 68 5 chr9 45085979 45086199 -72776428 - L3 LINE CR1 -205 1372 1139 702 246 62 0 chr9 45086646 45086825 -72775802 + MIR SINE MIR 62 251 -11 2471 80 0 3 chr9 45087308 45087610 -72775017 - AluY SINE Alu -10 301 1 267 211 0 164 chr9 45088025 45088153 -72774474 - MER102a DNA MER1_type -2 328 222 215 303 148 41 chr9 45088275 45088397 -72774230 + MIR SINE MIR 2 136 -126 23 0 0 0 chr9 45088955 45088978 -72773649 + AT_rich Low_complexity Low_complexity 1 23 0 624 123 118 107 chr9 45089251 45089438 -72773189 + MER53 DNA DNA 1 189 0 266 329 0 0 chr9 45089830 45089903 -72772724 - MIR3 SINE MIR -28 180 108 180 111 0 0 chr9 45089964 45089991 -72772636 + (TAG)n Simple_repeat Simple_repeat 1 27 0 * 201 274 0 0 chr9 45089989 45090062 -72772565 + GA-rich Low_complexity Low_complexity 3 75 0 283 256 58 16 chr9 45090170 45090291 -72772336 - L1ME4a LINE L1 -12 6109 5984 941 232 156 6 chr9 45090644 45091076 -72771551 + MLT1H LTR MaLR 4 548 -1 530 341 39 0 chr9 45092055 45092237 -72770390 - MIR SINE MIR -66 196 8 940 157 0 136 chr9 45092686 45092928 -72769699 + MER3 DNA MER1_type 1 209 0 672 283 37 25 chr9 45093094 45093144 -72769483 - MER102b DNA MER1_type -1089 339 291 1801 133 19 0 chr9 45093144 45093407 -72769220 + AluSx SINE Alu 1 268 -44 672 283 37 25 chr9 45093407 45093600 -72769027 - MER102b DNA MER1_type -1137 291 93 1458 257 81 15 chr9 45093619 45094078 -72768549 + LTR16C LTR ERVL 3 491 0 2312 94 0 0 chr9 45094229 45094517 -72768110 - AluSc SINE Alu -21 288 1 21 0 0 0 chr9 45094545 45094566 -72768061 + AT_rich Low_complexity Low_complexity 1 21 0 287 177 42 31 chr9 45098662 45098758 -72763869 + (CATATA)n Simple_repeat Simple_repeat 5 101 0 24146 81 6 8 chr9 45099242 45103343 -72759284 - L1PA7 LINE L1 -1 6153 2059 30 59 0 0 chr9 45103664 45103715 -72758912 + AT_rich Low_complexity Low_complexity 1 51 0 234 227 0 0 chr9 45103721 45103765 -72758862 - MIR SINE MIR -68 140 97 609 310 62 25 chr9 45103771 45104013 -72758614 + MIR SINE MIR 3 253 -9 2294 96 3 0 chr9 45104851 45105143 -72757484 + AluSx SINE Alu 1 293 -19 210 222 0 0 chr9 45105143 45105179 -72757448 + polypurine Low_complexity Low_complexity 1 36 0 336 254 177 0 chr9 45105234 45105364 -72757263 + MIR SINE MIR 99 251 -11 558 286 51 20 chr9 45106540 45106786 -72755841 - MIR SINE MIR -4 258 6 185 299 30 15 chr9 45106803 45106870 -72755757 - L2 LINE L2 -5 3267 3200 326 308 11 0 chr9 45107131 45107241 -72755386 + MIR SINE MIR 47 141 -67 2016 136 3 26 chr9 45107316 45107625 -72755002 + AluSx SINE Alu 1 302 -10 5355 92 13 3 chr9 45108051 45108732 -72753895 - LTR8 LTR ERV1 0 691 4 320 235 31 31 chr9 45108732 45108824 -72753803 + MIR SINE MIR 106 197 -65 1570 133 49 4 chr9 45110440 45110703 -72751924 - L1MA7 LINE L1 0 6291 6017 496 256 32 0 chr9 45110703 45110828 -72751799 + MIR SINE MIR 58 186 -76 1033 323 115 35 chr9 45111367 45112392 -72750235 + L2 LINE L2 1727 2833 -481 468 283 68 54 chr9 45112530 45112809 -72749818 + MLT1J LTR MaLR 229 511 0 442 304 20 104 chr9 45112827 45112942 -72749685 + L2 LINE L2 2804 2927 -386 2046 151 0 0 chr9 45112942 45113254 -72749373 - AluSx SINE Alu 0 312 1 442 304 20 104 chr9 45113254 45113687 -72748940 + L2 LINE L2 2927 3306 -7 2318 99 6 10 chr9 45113687 45114000 -72748627 + AluSx SINE Alu 1 312 0 1178 150 16 42 chr9 45114497 45114690 -72747937 - MER5A DNA MER1_type -1 188 1 2306 118 3 0 chr9 45115475 45115781 -72746846 - AluSp SINE Alu -6 307 1 363 344 6 25 chr9 45115810 45115970 -72746657 + MIR SINE MIR 106 262 0 574 256 0 24 chr9 45116237 45116405 -72746222 - MIR SINE MIR 0 262 99 2171 127 0 10 chr9 45116422 45116729 -72745898 + AluSx SINE Alu 1 304 -8 279 297 0 0 chr9 45117139 45117213 -72745414 + MIR SINE MIR 110 183 -79 1111 300 136 41 chr9 45118688 45119224 -72743403 + L1MEd LINE L1 2 588 -5531 673 264 52 64 chr9 45119252 45119673 -72742954 + L1MEd LINE L1 760 1175 -4944 2187 227 76 72 chr9 45119747 45120765 -72741862 + L1MC5 LINE L1 6638 7659 -302 1817 145 64 14 chr9 45120873 45121169 -72741458 - AluSx SINE Alu -1 311 1 40 0 0 0 chr9 45121684 45121724 -72740903 + AT_rich Low_complexity Low_complexity 1 40 0 279 309 124 0 chr9 45122329 45122620 -72740007 + L1MEd LINE L1 3151 3477 -2652 5401 152 35 5 chr9 45123026 45123904 -72738723 + L1MC1 LINE L1 5423 6327 -6 561 41 102 0 chr9 45124073 45124220 -72738407 + (TA)n Simple_repeat Simple_repeat 1 162 0 269 180 0 0 chr9 45124234 45124284 -72738343 + L1MC/D LINE L1 5447 5496 -746 943 152 33 0 chr9 45124305 45124456 -72738171 - AluJb SINE Alu -19 293 138 6784 122 21 27 chr9 45125304 45125407 -72737220 + L1MA5A LINE L1 4992 5094 -1203 2343 109 0 3 chr9 45125407 45125711 -72736916 + AluSc SINE Alu 1 303 -6 6784 122 21 27 chr9 45125711 45126738 -72735889 + L1MA5A LINE L1 5094 6111 -186 1988 142 3 10 chr9 45126738 45127040 -72735587 - AluSx SINE Alu -12 300 1 6784 122 21 27 chr9 45127040 45127205 -72735422 + L1MA5A LINE L1 6111 6275 -22 35 0 0 0 chr9 45127205 45127240 -72735387 + AT_rich Low_complexity Low_complexity 1 35 0 673 228 74 19 chr9 45127659 45127821 -72734806 + MLT2E LTR ERVL 12 182 -446 615 216 40 99 chr9 45127961 45128183 -72734444 - MIR SINE MIR -2 260 52 437 247 25 24 chr9 45128193 45128331 -72734296 + MIR3 SINE MIR 65 204 -4 3403 256 66 20 chr9 45128947 45130960 -72731667 + ERVL LTR ERVL 2577 4732 -922 262 278 41 10 chr9 45130960 45131057 -72731570 - L1ME LINE L1 -357 5764 5665 247 326 94 36 chr9 45131057 45131195 -72731432 + L2 LINE L2 3127 3272 0 246 171 0 0 chr9 45131252 45131293 -72731334 + MLT2E LTR ERVL 248 288 -340 1232 201 49 47 chr9 45131910 45132214 -72730413 - MLT1B LTR MaLR 0 390 65 2301 142 12 0 chr9 45132214 45132553 -72730074 - MER2 DNA MER2_type 0 344 2 1232 201 49 47 chr9 45132553 45132613 -72730014 - MLT1B LTR MaLR -325 65 7 1188 248 72 14 chr9 45133368 45133731 -72728896 + LTR16C LTR ERVL 104 487 -4 1392 157 19 91 chr9 45134106 45134296 -72728331 + L1MB3 LINE L1 5867 6023 -160 1977 146 0 31 chr9 45134296 45134618 -72728009 + AluJo SINE Alu 1 312 0 1392 157 19 91 chr9 45134618 45134769 -72727858 + L1MB3 LINE L1 6023 6183 0 201 159 0 0 chr9 45136139 45136183 -72726444 + T-rich Low_complexity Low_complexity 1 44 0 1601 251 84 27 chr9 45136701 45137179 -72725448 + LTR40a LTR ERVL 1 505 -14 4391 148 49 23 chr9 45137187 45137984 -72724643 - L1MA4A LINE L1 0 6303 5486 201 121 0 0 chr9 45138309 45138342 -72724285 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 691 236 66 6 chr9 45138437 45138619 -72724008 + MIR SINE MIR 58 250 -12 575 307 60 20 chr9 45138820 45139071 -72723556 - MIR SINE MIR -1 261 1 184 293 27 64 chr9 45139136 45139324 -72723303 - L2 LINE L2 -922 2392 2212 359 304 65 36 chr9 45139643 45139805 -72722822 + MIR SINE MIR 16 180 -63 1971 260 109 8 chr9 45139870 45140374 -72722253 + MLT1H1 LTR MaLR 1 555 0 215 216 0 0 chr9 45140526 45140563 -72722064 + polypyrimidine Low_complexity Low_complexity 1 37 0 561 220 117 112 chr9 45140630 45140853 -72721774 - MER58A DNA MER1_type 0 224 1 2196 132 0 0 chr9 45142437 45142741 -72719886 - AluSq SINE Alu -5 308 5 379 264 83 107 chr9 45143192 45143354 -72719273 - MLT1J LTR MaLR -193 318 166 1685 164 3 31 chr9 45143354 45143647 -72718980 + AluJo SINE Alu 1 285 -27 379 264 83 107 chr9 45143647 45143810 -72718817 - MLT1J LTR MaLR -345 166 1 791 242 6 11 chr9 45143831 45144009 -72718618 - MER69A DNA AcHobo 0 177 1 2149 135 0 3 chr9 45144961 45145272 -72717355 - AluSx SINE Alu -2 310 1 285 319 156 44 chr9 45145575 45146139 -72716488 + L2 LINE L2 2211 2837 -477 192 333 53 114 chr9 45146236 45146500 -72716127 + L2 LINE L2 3025 3272 0 432 205 13 0 chr9 45146521 45146599 -72716028 - Tigger5 DNA MER2_type 0 2323 2245 300 213 49 0 chr9 45146602 45146663 -72715964 + Tigger5 DNA MER2_type 2254 2317 -6 429 218 0 0 chr9 45146668 45146746 -72715881 - Tigger5 DNA MER2_type -2244 79 2 253 357 80 56 chr9 45146952 45147165 -72715462 - L2 LINE L2 -84 3188 2971 253 344 86 25 chr9 45147231 45147474 -72715153 - L2 LINE L2 -467 2847 2590 680 228 155 10 chr9 45147474 45147667 -72714960 + MIR SINE MIR 2 222 -40 390 360 67 48 chr9 45147725 45148230 -72714397 - L2 LINE L2 -733 2581 2067 531 306 112 42 chr9 45148943 45149397 -72713230 - L2 LINE L2 -1 3312 2827 1849 146 20 7 chr9 45149506 45149801 -72712826 + AluJb SINE Alu 3 301 -11 462 114 0 0 chr9 45149801 45149871 -72712756 + (GGA)n Simple_repeat Simple_repeat 1 70 0 755 307 46 41 chr9 45149909 45150326 -72712301 - L2 LINE L2 -639 2675 2257 225 0 0 0 chr9 45150388 45150413 -72712214 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1377 189 87 8 chr9 45150418 45150682 -72711945 - AluJo SINE Alu -26 286 2 661 228 154 0 chr9 45151104 45151253 -72711374 - MER5A DNA MER1_type -2 187 16 2060 142 6 10 chr9 45151871 45152182 -72710445 + AluSx SINE Alu 1 310 -2 1065 167 23 0 chr9 45152926 45153122 -72709505 + AluSg/x SINE Alu 115 310 0 2348 211 57 64 chr9 45153123 45154247 -72708380 + L1ME3A LINE L1 4697 5809 -353 1149 230 9 18 chr9 45154247 45154473 -72708154 + MER58A DNA MER1_type 1 224 0 1136 167 25 10 chr9 45154502 45154700 -72707927 + AluJo SINE Alu 86 286 -26 1336 209 39 81 chr9 45154733 45155140 -72707487 - MLT2C1 LTR ERVL 0 397 8 314 299 43 17 chr9 45155176 45155293 -72707334 + L1ME3A LINE L1 5836 5955 -215 225 0 0 0 chr9 45155425 45155450 -72707177 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 245 243 86 46 chr9 45156226 45156378 -72706249 - L1ME4a LINE L1 -2 6119 5962 466 262 10 0 chr9 45156392 45156495 -72706132 - L2 LINE L2 -9 3304 3201 381 22 0 0 chr9 45156665 45156711 -72705916 + (TG)n Simple_repeat Simple_repeat 1 46 0 296 308 0 0 chr9 45157104 45157195 -72705432 - L1MC5 LINE L1 -532 7429 7339 527 239 148 0 chr9 45157211 45157366 -72705261 - MIR SINE MIR -76 186 9 559 122 0 0 chr9 45157402 45157484 -72705143 - L1MA5 LINE L1 -2 6298 6217 273 336 30 92 chr9 45157671 45157821 -72704806 - L2 LINE L2 -22 3250 3123 800 211 100 5 chr9 45157821 45158011 -72704616 - MER3 DNA MER1_type -1 208 1 273 336 30 92 chr9 45158011 45158131 -72704496 - L2 LINE L2 -149 3123 2997 224 322 195 7 chr9 45158132 45158281 -72704346 - MIR SINE MIR -74 188 12 307 313 151 42 chr9 45159310 45159575 -72703052 - L1ME4a LINE L1 -2031 5777 5484 332 235 151 0 chr9 45159609 45159728 -72702899 + MIR SINE MIR 100 236 -26 183 300 17 17 chr9 45160070 45160130 -72702497 - L3 LINE CR1 -2 1575 1516 328 304 80 43 chr9 45160486 45160624 -72702003 + HAL1 LINE L1 2274 2416 -91 4530 168 17 32 chr9 45160889 45161760 -72700867 - L1MB8 LINE L1 -10 6168 5313 881 262 158 27 chr9 45163143 45163509 -72699118 + MLT1J2 LTR MaLR 37 450 0 2883 56 8 32 chr9 45165004 45165378 -72697249 + L1PA5 LINE L1 5790 6154 0 420 310 89 6 chr9 45166012 45166170 -72696457 - MIR3 SINE MIR -18 190 20 194 105 26 0 chr9 45166211 45166249 -72696378 + GA-rich Low_complexity Low_complexity 3 41 0 864 267 23 113 chr9 45166908 45167252 -72695375 + MLT1H LTR MaLR 77 360 -189 1575 171 7 47 chr9 45167252 45167550 -72695077 + AluJo SINE Alu 1 286 -26 864 267 23 113 chr9 45167550 45167725 -72694902 + MLT1H LTR MaLR 360 549 0 692 288 191 12 chr9 45167725 45168060 -72694567 - MLT1H LTR MaLR -43 506 111 367 207 331 0 chr9 45169020 45169141 -72693486 + MIR3 SINE MIR 27 187 -21 244 132 0 0 chr9 45169285 45169323 -72693304 + L1MA9 LINE L1 6275 6312 0 202 154 15 15 chr9 45170786 45170851 -72691776 + C-rich Low_complexity Low_complexity 3 67 0 436 316 0 15 chr9 45172793 45172929 -72689698 - MIR3 SINE MIR -65 143 10 349 331 78 0 chr9 45173006 45173148 -72689479 + MIR3 SINE MIR 46 198 -10 215 191 0 0 chr9 45173466 45173508 -72689119 + L2 LINE L2 3271 3312 -1 208 291 73 0 chr9 45174146 45174201 -72688426 - MIR SINE MIR -68 140 82 1641 185 33 3 chr9 45174430 45174733 -72687894 - AluJb SINE Alu 0 312 1 1815 139 29 0 chr9 45174857 45175130 -72687497 + AluJo SINE Alu 22 302 -10 181 397 0 0 chr9 45176652 45176730 -72685897 + L2 LINE L2 3227 3304 -9 242 309 85 0 chr9 45176731 45176825 -72685802 - MARNA DNA Mariner -62 524 423 21 36 0 0 chr9 45176872 45176900 -72685727 + AT_rich Low_complexity Low_complexity 1 28 0 285 295 100 111 chr9 45177106 45177201 -72685426 + L2 LINE L2 3015 3110 -162 2407 176 41 17 chr9 45177201 45177616 -72685011 + MSTB LTR MaLR 1 425 -1 285 295 100 111 chr9 45177616 45177781 -72684846 + L2 LINE L2 3110 3272 0 414 222 0 0 chr9 45178243 45178315 -72684312 + MER5A DNA MER1_type 1 72 -117 2196 102 0 0 chr9 45178317 45178627 -72684000 + AluSq SINE Alu 1 310 0 314 324 113 15 chr9 45179029 45179233 -72683394 - MIR SINE MIR -19 243 20 931 334 64 5 chr9 45179305 45179742 -72682885 + L2 LINE L2 2229 2691 -623 306 314 59 13 chr9 45180466 45180619 -72682008 + L2 LINE L2 2729 2888 -426 5160 131 19 10 chr9 45181648 45182449 -72680178 + L1PA16 LINE L1 5356 6163 -3 1251 204 132 16 chr9 45182618 45182937 -72679690 - MLT1A1 LTR MaLR 0 365 10 661 262 0 63 chr9 45182975 45183196 -72679431 + MER112 DNA MER1_type 37 243 -17 513 251 54 24 chr9 45185166 45185333 -72677294 + L2 LINE L2 3137 3308 -5 519 324 98 57 chr9 45186273 45186804 -72675823 - L2 LINE L2 -460 2854 2302 2200 94 3 31 chr9 45187396 45187714 -72674913 - AluSx SINE Alu -3 309 1 231 95 0 79 chr9 45187809 45187872 -72674755 + (TTTA)n Simple_repeat Simple_repeat 3 60 0 6169 172 24 50 chr9 45187886 45188360 -72674267 - L1MA4 LINE L1 -13 6287 5802 180 0 0 0 chr9 45188360 45188380 -72674247 + (TG)n Simple_repeat Simple_repeat 1 20 0 * 303 28 0 0 chr9 45188379 45188415 -72674212 + (GA)n Simple_repeat Simple_repeat 1 36 0 6169 172 24 50 chr9 45188380 45189975 -72672652 - L1MA4 LINE L1 -498 5802 4302 359 153 0 0 chr9 45189987 45190046 -72672581 - L1MA4 LINE L1 -2046 4100 4042 264 272 40 89 chr9 45190461 45190663 -72671964 + MIR SINE MIR 44 235 -27 1153 105 0 6 chr9 45191309 45191481 -72671146 + L1MA3 LINE L1 6135 6305 0 344 327 93 7 chr9 45191772 45191922 -72670705 + HAL1b LINE L1 748 910 -438 821 230 73 8 chr9 45191928 45192189 -72670438 - L1MC/D LINE L1 -596 5570 5296 463 282 118 32 chr9 45192761 45192981 -72669646 - MIR SINE MIR -8 254 16 602 290 70 55 chr9 45193116 45193347 -72669280 - L2 LINE L2 -1 3312 3086 1946 148 13 62 chr9 45193347 45193731 -72668896 - MLT1A1 LTR MaLR 0 365 1 602 290 70 55 chr9 45193731 45193997 -72668630 - L2 LINE L2 -227 3086 2727 356 314 111 52 chr9 45194941 45195266 -72667361 + L1ME LINE L1 5471 5639 -482 216 97 0 0 chr9 45198085 45198116 -72664511 + (ATG)n Simple_repeat Simple_repeat 1 31 0 2257 97 0 16 chr9 45198773 45199083 -72663544 - AluSg SINE Alu -4 306 2 467 311 132 6 chr9 45199139 45199306 -72663321 + MIR SINE MIR 3 190 -72 859 161 56 127 chr9 45200260 45200584 -72662043 - L1MC3 LINE L1 0 7785 7485 1724 122 0 4 chr9 45200598 45200836 -72661791 - AluSx SINE Alu -75 237 1 829 253 49 113 chr9 45200836 45201420 -72661207 - L2 LINE L2 -146 3167 2624 435 311 143 43 chr9 45201499 45201596 -72661031 - L1ME4a LINE L1 -213 5908 5822 2375 171 88 6 chr9 45201596 45202063 -72660564 - MLT1D LTR MaLR 0 505 1 435 311 143 43 chr9 45202063 45202491 -72660136 - L1ME4a LINE L1 -299 5822 5317 707 352 133 33 chr9 45202667 45203422 -72659205 + L3 LINE CR1 11 840 -737 253 313 17 78 chr9 45203605 45203784 -72658843 + MIR3 SINE MIR 30 197 -11 216 269 0 125 chr9 45207040 45207144 -72655483 + L3 LINE CR1 1482 1572 -5 544 196 34 29 chr9 45207293 45207450 -72655177 - MIR SINE MIR -5 257 99 356 291 55 18 chr9 45207946 45208056 -72654571 - L2 LINE L2 -14 3258 3145 1660 163 25 7 chr9 45208119 45208402 -72654225 - AluJb SINE Alu -12 300 13 222 269 172 78 chr9 45210500 45210913 -72651714 + L2 LINE L2 2862 3313 0 2006 116 0 0 chr9 45210988 45211256 -72651371 - AluSx SINE Alu -10 302 35 221 185 15 0 chr9 45211371 45211436 -72651191 + CT-rich Low_complexity Low_complexity 2 67 0 1539 191 84 0 chr9 45212818 45213153 -72649474 - L1MB5 LINE L1 -8 6166 5804 2301 79 33 0 chr9 45213520 45213823 -72648804 - AluSp SINE Alu 0 313 1 421 256 124 8 chr9 45213872 45213993 -72648634 + MIR SINE MIR 20 154 -108 1475 241 62 19 chr9 45214000 45214469 -72648158 + MLT1D LTR MaLR 17 505 0 1042 165 58 5 chr9 45214598 45214804 -72647823 - MER20 DNA MER1_type 0 219 3 878 185 34 39 chr9 45214833 45215038 -72647589 + MIR SINE MIR 57 260 -2 449 271 43 63 chr9 45215502 45215709 -72646918 - L2 LINE L2 -28 3285 3083 282 290 15 3 chr9 45216034 45216169 -72646458 + MIR SINE MIR 83 255 -7 407 156 133 0 chr9 45216708 45216798 -72645829 + L1MB5 LINE L1 6055 6156 -18 21 82 0 0 chr9 45216914 45216963 -72645664 + AT_rich Low_complexity Low_complexity 1 49 0 316 235 0 29 chr9 45217073 45217141 -72645486 + L2 LINE L2 3240 3305 -8 200 231 138 0 chr9 45217220 45217285 -72645342 - MIR3 SINE MIR -39 169 96 214 162 40 50 chr9 45217394 45217493 -72645134 + CT-rich Low_complexity Low_complexity 2 99 0 180 386 61 23 chr9 45217513 45217645 -72644982 + MIR SINE MIR 17 153 -55 382 250 8 0 chr9 45217895 45218019 -72644608 - L1M4 LINE L1 -1098 5048 4924 2267 101 0 32 chr9 45218245 45218424 -72644203 - AluSx SINE Alu -6 306 140 2497 80 0 0 chr9 45218424 45218735 -72643892 - AluY SINE Alu 0 311 1 2267 101 0 32 chr9 45218735 45218871 -72643756 - AluSx SINE Alu -172 140 1 637 299 39 44 chr9 45218873 45219083 -72643544 - L1M4 LINE L1 -1462 4684 4475 2535 57 0 0 chr9 45219083 45219380 -72643247 - AluY SINE Alu -14 297 1 637 299 39 44 chr9 45219380 45219577 -72643050 - L1M4 LINE L1 -1671 4475 4279 1574 184 37 5 chr9 45221672 45222052 -72640575 - Charlie5 DNA MER1_type 0 2624 2233 280 252 42 59 chr9 45222065 45222184 -72640443 - MER3 DNA MER1_type -53 156 40 27 0 0 0 chr9 45222580 45222607 -72640020 + AT_rich Low_complexity Low_complexity 1 27 0 594 99 20 0 chr9 45222608 45222709 -72639918 + MER3 DNA MER1_type 2234 2336 0 314 282 51 45 chr9 45222717 45222873 -72639754 + L1ME LINE L1 332 488 -5908 257 250 0 0 chr9 45222891 45222943 -72639684 - L1MEc LINE L1 -6310 86 35 4288 226 76 24 chr9 45222943 45224569 -72638058 + L1ME LINE L1 790 2462 -3944 786 199 85 4 chr9 45224569 45224840 -72637787 + MER3 DNA MER1_type 2328 2620 0 252 299 88 36 chr9 45225571 45225708 -72636919 + L2 LINE L2 3168 3311 -2 244 330 102 57 chr9 45225938 45226114 -72636513 + MIR3 SINE MIR 2 185 -23 2043 190 52 44 chr9 45226343 45226844 -72635783 - MLT1D LTR MaLR 0 505 1 204 293 40 53 chr9 45227775 45227850 -72634777 + MER91C DNA MER1_type 34 107 -33 310 378 37 54 chr9 45227908 45228204 -72634423 - L2 LINE L2 -120 3152 2862 515 303 19 12 chr9 45228226 45228388 -72634239 + MIR SINE MIR 94 256 -6 240 35 0 0 chr9 45228983 45229012 -72633615 + (T)n Simple_repeat Simple_repeat 1 29 0 34 42 0 0 chr9 45229814 45229862 -72632765 + AT_rich Low_complexity Low_complexity 1 48 0 574 301 107 9 chr9 45230583 45231008 -72631619 + L1ME4a LINE L1 5366 5826 -295 242 250 12 24 chr9 45231086 45231170 -72631457 + L1ME4a LINE L1 5970 6052 -69 422 275 88 22 chr9 45231223 45231678 -72630949 + L1ME4a LINE L1 5599 6119 -2 315 240 142 33 chr9 45232164 45232225 -72630402 + L1M4 LINE L1 3714 3767 -2379 2522 84 0 0 chr9 45232225 45232535 -72630092 + AluSx SINE Alu 3 312 0 315 240 142 33 chr9 45232535 45232697 -72629930 + L1M4 LINE L1 3767 3942 -2204 433 229 9 0 chr9 45232705 45232810 -72629817 + L1ME1 LINE L1 6057 6162 -4 376 338 108 17 chr9 45232901 45233132 -72629495 + L1M4 LINE L1 4041 4292 -1854 441 249 29 69 chr9 45233547 45233816 -72628811 + Charlie8 DNA MER1_type 79 1428 -989 29 28 0 0 chr9 45234007 45234043 -72628584 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr9 45234517 45234540 -72628087 + AT_rich Low_complexity Low_complexity 1 23 0 208 279 0 33 chr9 45234750 45234811 -72627816 + L2 LINE L2 3251 3309 -4 1669 154 43 7 chr9 45235433 45235738 -72626889 + MER1B DNA MER1_type 24 339 0 360 335 94 16 chr9 45235742 45235987 -72626640 - L2 LINE L2 -930 2384 2121 348 306 65 0 chr9 45236032 45236140 -72626487 + MIR3 SINE MIR 89 203 -5 514 243 216 28 chr9 45236376 45236557 -72626070 + MIR SINE MIR 2 216 -46 324 291 189 0 chr9 45237812 45237960 -72624667 - MIR SINE MIR -15 247 72 348 248 95 10 chr9 45239438 45239590 -72623037 - L1ME3 LINE L1 -8 6154 5973 318 161 48 0 chr9 45239590 45239652 -72622975 - Tigger7 DNA MER2_type -1 2586 2522 4817 137 62 6 chr9 45239763 45240586 -72622041 - Tigger7 DNA MER2_type -1617 870 2 734 246 213 17 chr9 45240586 45240943 -72621684 - L1ME3 LINE L1 -195 5975 5549 769 128 23 23 chr9 45241328 45241461 -72621166 - FLAM_C SINE Alu 0 133 1 37 69 0 0 chr9 45241467 45241539 -72621088 + AT_rich Low_complexity Low_complexity 1 72 0 583 273 99 51 chr9 45242108 45242401 -72620226 - L2 LINE L2 -8 3305 2999 389 241 218 17 chr9 45243029 45243203 -72619424 + MIR SINE MIR 51 259 -3 1099 301 46 3 chr9 45243260 45243629 -72618998 + L2 LINE L2 2395 2779 -535 290 291 23 12 chr9 45243766 45243852 -72618775 + L2 LINE L2 2947 3033 -280 199 211 28 99 chr9 45243970 45244041 -72618586 + L2 LINE L2 3248 3313 0 183 80 0 0 chr9 45244952 45244977 -72617650 + (CGG)n Simple_repeat Simple_repeat 1 25 0 308 358 138 50 chr9 45247598 45248221 -72614406 + L2 LINE L2 2248 2925 -389 688 329 98 33 chr9 45248487 45248937 -72613690 + L2 LINE L2 2461 2939 -375 722 227 41 23 chr9 45250425 45250597 -72612030 - MIR SINE MIR -21 241 67 195 281 31 0 chr9 45250637 45250701 -72611926 + MIR SINE MIR 170 235 -27 * 322 294 115 60 chr9 45250697 45250966 -72611661 - L3 LINE CR1 -85 1492 1209 571 221 27 47 chr9 45251129 45251278 -72611349 - MIR SINE MIR 0 262 117 34 24 0 0 chr9 45251338 45251379 -72611248 + AT_rich Low_complexity Low_complexity 1 41 0 2182 120 0 13 chr9 45252497 45252813 -72609814 - AluSx SINE Alu 0 312 1 261 0 0 0 chr9 45253355 45253384 -72609243 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 210 128 0 0 chr9 45255477 45255516 -72607111 + (CA)n Simple_repeat Simple_repeat 1 39 0 342 333 64 89 chr9 45256722 45257172 -72605455 + L2 LINE L2 2834 3272 0 201 194 0 0 chr9 45257290 45257326 -72605301 - L2 LINE L2 -4 3309 3274 2347 61 3 10 chr9 45257335 45257659 -72604968 - AluY SINE Alu 0 311 1 382 224 27 109 chr9 45257753 45257936 -72604691 - L2 LINE L2 0 3313 3146 213 260 20 0 chr9 45257954 45258004 -72604623 + (TATATG)n Simple_repeat Simple_repeat 2 52 0 3423 238 73 50 chr9 45258005 45259097 -72603530 - L2 LINE L2 -404 2910 1793 311 0 0 25 chr9 45259271 45259311 -72603316 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 25 0 0 0 chr9 45259571 45259596 -72603031 + AT_rich Low_complexity Low_complexity 1 25 0 394 313 66 1 chr9 45260102 45260238 -72602389 + MIR SINE MIR 45 188 -57 562 289 155 24 chr9 45260852 45261226 -72601401 - L1ME4a LINE L1 -6 6115 5693 317 214 0 67 chr9 45261942 45262031 -72600596 - L2 LINE L2 0 3313 3231 315 0 0 0 chr9 45262693 45262728 -72599899 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 875 290 140 58 chr9 45263153 45264063 -72598564 - L2 LINE L2 -5 3308 2232 3378 197 26 9 chr9 45264223 45264990 -72597637 + L1 LINE L1 4587 5366 -780 274 206 32 0 chr9 45265121 45265184 -72597443 + Zaphod DNA AcHobo 3966 4030 -1 194 132 226 0 chr9 45265231 45265284 -72597343 + L2 LINE L2 3208 3272 0 339 263 29 126 chr9 45265448 45265623 -72597004 + MER91A DNA MER1_type 3 160 -36 210 209 47 0 chr9 45265655 45265698 -72596929 + MER91A DNA MER1_type 133 177 -13 299 269 55 21 chr9 45266817 45266962 -72595665 + L1ME4a LINE L1 5961 6110 -11 281 89 22 0 chr9 45267300 45267345 -72595282 + (TGGA)n Simple_repeat Simple_repeat 3 48 0 574 331 129 41 chr9 45267350 45268388 -72594239 - L2 LINE L2 -93 3179 2038 213 208 62 0 chr9 45268753 45268801 -72593826 - L2 LINE L2 0 3272 3222 385 220 110 34 chr9 45269349 45269467 -72593160 + MIR SINE MIR 2 128 -134 1057 189 0 0 chr9 45269469 45269638 -72592989 - FRAM SINE Alu -9 167 1 573 228 29 47 chr9 45269640 45269811 -72592816 + MIR SINE MIR 94 261 -1 566 275 65 31 chr9 45270321 45270550 -72592077 - MIR SINE MIR -20 242 6 24 67 0 0 chr9 45271823 45271868 -72590759 + AT_rich Low_complexity Low_complexity 1 45 0 2115 136 0 13 chr9 45272801 45273111 -72589516 + AluSx SINE Alu 6 311 -1 222 91 0 0 chr9 45274159 45274192 -72588435 + (TTG)n Simple_repeat Simple_repeat 1 33 0 315 325 95 56 chr9 45274567 45274872 -72587755 + L2 LINE L2 2955 3271 -1 198 301 77 77 chr9 45275836 45275979 -72586648 + MIR3 SINE MIR 17 159 -49 959 245 68 85 chr9 45276177 45276695 -72585932 + LTR33A LTR ERVL 7 515 -8 308 266 16 39 chr9 45276763 45276891 -72585736 - MER5B DNA MER1_type -35 143 19 372 341 77 33 chr9 45277760 45278033 -72584594 + HAL1 LINE L1 1364 1648 -859 1482 232 50 25 chr9 45278418 45278862 -72583765 + MLT1C LTR MaLR 11 465 -2 23 42 0 21 chr9 45279395 45279415 -72583212 + AT_rich Low_complexity Low_complexity 1 20 -27 1997 110 7 17 chr9 45279415 45279707 -72582920 + AluJb SINE Alu 1 289 -23 23 42 0 21 chr9 45279707 45279734 -72582893 + AT_rich Low_complexity Low_complexity 20 47 0 475 305 58 56 chr9 45279784 45280214 -72582413 + L1MC/D LINE L1 2662 3092 -3054 233 253 37 43 chr9 45280335 45280497 -72582130 + L1MC/D LINE L1 3283 3443 -2703 26 0 0 0 chr9 45280700 45280726 -72581901 + AT_rich Low_complexity Low_complexity 1 26 0 477 335 93 60 chr9 45280756 45280996 -72581631 + L1MC/D LINE L1 4383 4614 -1532 2316 112 0 0 chr9 45280996 45281309 -72581318 - AluSq SINE Alu 0 313 1 477 335 93 60 chr9 45281309 45281989 -72580638 + L1MC/D LINE L1 4614 5339 -807 455 292 88 45 chr9 45282009 45282430 -72580197 + L1MC/D LINE L1 5373 5811 -1997 911 150 0 0 chr9 45282603 45282736 -72579891 - FLAM_C SINE Alu 0 133 1 256 250 45 11 chr9 45283746 45283834 -72578793 - L1ME4a LINE L1 -28 6093 6003 804 116 0 84 chr9 45283940 45284095 -72578532 - L1MB5 LINE L1 -9 6165 6024 498 172 97 0 chr9 45284095 45284188 -72578439 + MER2 DNA MER2_type 2 103 -242 1685 191 3 0 chr9 45284188 45284481 -72578146 - AluJo SINE Alu -14 298 5 1743 127 91 11 chr9 45285908 45286183 -72576444 + AluJb SINE Alu 1 297 -15 631 275 79 46 chr9 45286319 45286884 -72575743 + L1ME4a LINE L1 5313 5892 -229 226 250 132 46 chr9 45286914 45287066 -72575561 + L1ME4a LINE L1 5956 6120 -1 973 178 0 37 chr9 45287088 45287251 -72575376 + FRAM SINE Alu 2 158 -8 1332 209 67 83 chr9 45287700 45288194 -72574433 - MLT1D LTR MaLR -4 501 16 829 391 77 8 chr9 45289751 45290405 -72572222 + L3 LINE CR1 31 729 -848 1140 251 45 15 chr9 45291151 45291482 -72571145 - MER102b DNA MER1_type 0 341 1 2246 105 3 3 chr9 45291658 45291964 -72570663 - AluSx SINE Alu -6 306 1 1047 187 44 15 chr9 45292219 45292422 -72570205 + MER3 DNA MER1_type 1 209 0 2159 115 0 0 chr9 45293732 45294020 -72568607 + AluSx SINE Alu 1 288 -24 934 210 78 24 chr9 45294329 45294534 -72568093 + MER20 DNA MER1_type 4 219 0 276 309 46 66 chr9 45294567 45294719 -72567908 + MIR SINE MIR 50 198 -64 330 179 0 0 chr9 45294998 45295054 -72567573 + Alu SINE Alu 238 293 -9 795 249 52 30 chr9 45296223 45296456 -72566171 - MIR SINE MIR -19 243 6 2179 85 7 3 chr9 45296596 45296878 -72565749 - AluSq SINE Alu -19 294 12 759 279 114 55 chr9 45297926 45298372 -72564255 - L2 LINE L2 0 3313 2836 576 181 281 0 chr9 45298372 45298543 -72564084 + MER20 DNA MER1_type 1 219 0 759 279 114 55 chr9 45298543 45298570 -72564057 - L2 LINE L2 -477 2836 2812 394 338 138 3 chr9 45298548 45298859 -72563768 - L2 LINE L2 -710 2604 2252 * 185 344 8 57 chr9 45299351 45299473 -72563154 + L2 LINE L2 3108 3223 -49 181 289 0 0 chr9 45300435 45300473 -72562154 + L2 LINE L2 3185 3222 -91 21 36 0 0 chr9 45301129 45301157 -72561470 + AT_rich Low_complexity Low_complexity 1 28 0 206 256 0 0 chr9 45301519 45301562 -72561065 + (CATATA)n Simple_repeat Simple_repeat 4 46 0 879 329 81 50 chr9 45302205 45302578 -72560049 + L2 LINE L2 1554 1914 -1400 2389 109 0 0 chr9 45302578 45302890 -72559737 - AluSx SINE Alu 0 312 1 879 329 81 50 chr9 45302890 45303676 -72558951 + L2 LINE L2 1914 2749 -565 198 0 0 0 chr9 45303677 45303699 -72558928 + (TAA)n Simple_repeat Simple_repeat 1 22 0 271 215 0 62 chr9 45303752 45303817 -72558810 + L2 LINE L2 3253 3313 0 444 327 66 88 chr9 45304247 45304715 -72557912 - L2 LINE L2 0 3272 2815 2225 157 39 33 chr9 45305199 45305684 -72556943 - Charlie1b DNA MER1_type -1 522 35 2424 86 7 0 chr9 45305735 45306039 -72556588 + AluSp SINE Alu 1 306 -7 340 259 0 65 chr9 45306324 45306432 -72556195 - L2 LINE L2 -527 2787 2687 205 300 66 16 chr9 45306800 45306925 -72555702 + MIR SINE MIR 62 190 -70 2093 122 53 28 chr9 45307632 45307992 -72554635 - L1MA8 LINE L1 -3 6288 5920 482 253 68 12 chr9 45308343 45308505 -72554122 + MIR SINE MIR 23 193 -69 670 257 106 28 chr9 45308543 45308761 -72553866 + MIR SINE MIR 28 262 0 431 266 44 0 chr9 45309029 45309142 -72553485 + MER5A DNA MER1_type 67 184 -5 183 114 0 0 chr9 45309603 45309638 -72552989 + (T)n Simple_repeat Simple_repeat 1 35 0 263 341 59 44 chr9 45310054 45310234 -72552393 - L2 LINE L2 -1074 2240 2052 1978 135 7 0 chr9 45310234 45310560 -72552067 + AluSx SINE Alu 1 328 0 263 341 59 44 chr9 45310560 45310651 -72551976 - L2 LINE L2 -1262 2052 1964 802 168 143 6 chr9 45310783 45310944 -72551683 - MER20 DNA MER1_type 0 219 37 288 77 0 0 chr9 45311125 45311164 -72551463 + (CA)n Simple_repeat Simple_repeat 1 39 0 540 268 68 47 chr9 45311840 45312030 -72550597 + MER117 DNA MER1_type 3 196 -1 613 111 139 0 chr9 45312241 45312349 -72550278 + L1MB3 LINE L1 6057 6179 -4 842 179 36 0 chr9 45313375 45313543 -72549084 + MER5A DNA MER1_type 16 189 0 997 139 0 19 chr9 45313840 45313998 -72548629 + AluSg/x SINE Alu 150 304 -8 24 77 0 0 chr9 45314147 45314199 -72548428 + AT_rich Low_complexity Low_complexity 1 52 0 473 183 130 17 chr9 45315279 45315394 -72547233 + L1MA10 LINE L1 6193 6320 -14 362 307 65 52 chr9 45315997 45316228 -72546399 - MIR SINE MIR -9 253 20 2340 141 6 18 chr9 45316809 45317150 -72545477 + MER1B DNA MER1_type 1 337 0 1113 191 38 14 chr9 45317163 45317373 -72545254 + MER58A DNA MER1_type 4 218 -6 842 154 0 0 chr9 45317373 45317490 -72545137 + FLAM_C SINE Alu 1 117 -16 33 0 0 0 chr9 45317490 45317523 -72545104 + AT_rich Low_complexity Low_complexity 1 33 0 195 42 0 0 chr9 45318100 45318124 -72544503 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 21 0 0 0 chr9 45320196 45320217 -72542410 + AT_rich Low_complexity Low_complexity 1 21 0 1143 281 128 32 chr9 45320349 45320922 -72541705 - L1MC4a LINE L1 -1869 5939 5300 1622 126 0 0 chr9 45320922 45321144 -72541483 - AluJb SINE Alu -6 306 85 1143 281 128 32 chr9 45321144 45321196 -72541431 - L1MC4a LINE L1 -2508 5300 5254 184 308 26 26 chr9 45321436 45321514 -72541113 - MIR SINE MIR -176 86 9 211 273 0 0 chr9 45322038 45322093 -72540534 + (TG)n Simple_repeat Simple_repeat 2 56 0 21 0 0 0 chr9 45322578 45322599 -72540028 + AT_rich Low_complexity Low_complexity 1 21 0 261 0 0 0 chr9 45322937 45322966 -72539661 + (A)n Simple_repeat Simple_repeat 1 29 0 355 153 0 17 chr9 45323150 45323209 -72539418 - L2 LINE L2 0 3272 3215 369 0 0 0 chr9 45325655 45325696 -72536931 + (TG)n Simple_repeat Simple_repeat 2 42 0 592 206 40 23 chr9 45326721 45326896 -72535731 + L1MC5 LINE L1 7609 7786 -175 2349 109 0 0 chr9 45326927 45327239 -72535388 + AluSx SINE Alu 1 312 0 1006 166 116 21 chr9 45327239 45327480 -72535147 + L1MA4 LINE L1 6037 6300 0 899 118 7 7 chr9 45327481 45327625 -72535002 + L1MA8 LINE L1 6144 6287 -4 320 215 0 0 chr9 45327635 45327700 -72534927 + L1MB8 LINE L1 6111 6175 -3 665 261 27 16 chr9 45327877 45328065 -72534562 - AluJo SINE Alu -118 194 5 2004 177 160 40 chr9 45328374 45328825 -72533802 - MLT1D LTR MaLR 0 505 1 540 261 103 55 chr9 45328919 45329229 -72533398 - L2 LINE L2 -1 3312 2988 185 281 88 0 chr9 45329271 45329328 -72533299 - L2 LINE L2 -61 3252 3191 946 140 122 12 chr9 45329608 45329772 -72532855 + MLT1D LTR MaLR 324 505 0 1069 321 131 7 chr9 45329909 45330510 -72532117 - L2 LINE L2 -668 2646 1971 549 259 114 12 chr9 45330674 45330929 -72531698 + L1ME4a LINE L1 5801 6081 -40 1871 187 3 0 chr9 45331242 45331542 -72531085 + AluJb SINE Alu 3 303 -9 243 0 0 0 chr9 45331615 45331642 -72530985 + (TAA)n Simple_repeat Simple_repeat 1 27 0 340 346 74 30 chr9 45332731 45332962 -72529665 - MLT1J2 LTR MaLR -15 435 195 854 260 95 82 chr9 45332994 45333424 -72529203 + LTR33 LTR ERVL 2 441 -80 1942 55 0 13 chr9 45333424 45333659 -72528968 - L1PA8 LINE L1 0 6172 5941 854 260 95 82 chr9 45333659 45333731 -72528896 + LTR33 LTR ERVL 441 511 -10 781 213 67 88 chr9 45335112 45335441 -72527186 - MLT1D LTR MaLR -182 323 2 256 294 139 33 chr9 45336382 45336562 -72526065 - MIR3 SINE MIR -3 205 7 1025 208 37 37 chr9 45337132 45337348 -72525279 + MER20 DNA MER1_type 4 219 0 357 341 0 8 chr9 45339593 45339722 -72522905 - MIR3 SINE MIR -14 194 67 201 245 330 0 chr9 45340518 45340624 -72522003 + MIR SINE MIR 106 246 -16 459 0 0 0 chr9 45341939 45341990 -72520637 + (TG)n Simple_repeat Simple_repeat 2 52 0 483 304 18 2 chr9 45342507 45342650 -72519977 + MIR SINE MIR 9 147 -61 623 305 53 32 chr9 45343395 45343892 -72518735 + L1MC4a LINE L1 5373 5824 -297 1810 141 53 3 chr9 45343906 45344190 -72518437 - AluJb SINE Alu -14 298 1 326 290 124 26 chr9 45344524 45344717 -72517910 - MLT1J LTR MaLR -37 474 263 1036 153 62 14 chr9 45344867 45345076 -72517551 - MER20 DNA MER1_type 0 219 1 226 379 0 0 chr9 45346584 45346671 -72515956 - MIR SINE MIR -108 154 68 2837 181 31 0 chr9 45347207 45347295 -72515332 + L1MA6 LINE L1 4739 4823 -1323 234 0 0 0 chr9 45347295 45347321 -72515306 + (CA)n Simple_repeat Simple_repeat 2 27 0 2837 181 31 0 chr9 45347321 45347835 -72514792 + L1MA6 LINE L1 4823 5360 -786 1770 182 3 7 chr9 45347851 45348153 -72514474 + AluJb SINE Alu 1 301 -11 886 205 77 40 chr9 45348276 45348562 -72514065 + L1MA6 LINE L1 5985 6284 -16 1909 95 4 0 chr9 45348562 45348824 -72513803 + L1PB3 LINE L1 5892 6154 0 886 205 77 40 chr9 45348824 45348835 -72513792 + L1MA6 LINE L1 6284 6293 -7 2337 77 7 0 chr9 45348879 45349176 -72513451 + AluY SINE Alu 1 299 -12 213 226 118 78 chr9 45349429 45349531 -72513096 - L2 LINE L2 -14 3258 3153 1012 254 93 38 chr9 45349693 45350254 -72512373 + L2 LINE L2 2617 3220 -93 184 229 0 0 chr9 45350242 45350277 -72512350 + MIR SINE MIR 218 252 -10 * 191 341 115 33 chr9 45350315 45350497 -72512130 - L2 LINE L2 -337 2977 2781 414 39 0 0 chr9 45350499 45350551 -72512076 - L1MA2 LINE L1 -360 5944 5893 524 339 181 16 chr9 45350568 45350870 -72511757 - L2 LINE L2 -582 2732 2481 712 252 5 58 chr9 45350870 45350958 -72511669 + MER91A DNA MER1_type 2 93 -103 2327 91 3 0 chr9 45350958 45351256 -72511371 - AluY SINE Alu -12 299 1 712 252 5 58 chr9 45351256 45351373 -72511254 + MER91A DNA MER1_type 93 196 0 524 339 181 16 chr9 45351373 45351572 -72511055 - L2 LINE L2 -833 2481 2148 428 232 28 84 chr9 45352324 45352431 -72510196 + MIR SINE MIR 47 146 -116 2552 56 0 3 chr9 45352431 45352733 -72509894 + AluY SINE Alu 1 301 -10 428 232 28 84 chr9 45352733 45352767 -72509860 + MIR SINE MIR 146 180 -82 933 284 41 0 chr9 45352858 45353101 -72509526 - MIR SINE MIR -3 259 7 393 271 94 22 chr9 45353646 45353827 -72508800 - L1ME4a LINE L1 -44 6077 5884 1919 127 17 20 chr9 45353944 45354236 -72508391 + AluJb SINE Alu 1 291 -21 304 325 62 95 chr9 45354288 45354857 -72507770 + L1ME LINE L1 3850 4399 -1747 431 246 84 88 chr9 45354981 45355699 -72506928 + L1ME LINE L1 4398 5112 -1034 2193 118 0 13 chr9 45355765 45356070 -72506557 + AluSx SINE Alu 1 301 -11 2439 85 0 0 chr9 45356301 45356608 -72506019 - AluSg SINE Alu -3 307 1 382 308 88 62 chr9 45356768 45357028 -72505599 + L1ME LINE L1 5399 5665 -456 198 0 0 0 chr9 45358242 45358264 -72504363 + (A)n Simple_repeat Simple_repeat 1 22 0 590 322 59 17 chr9 45358718 45358954 -72503673 - MIR SINE MIR -5 257 12 264 306 77 63 chr9 45361645 45362304 -72500323 + L2 LINE L2 2358 3041 -231 185 250 0 0 chr9 45362430 45362470 -72500157 + L2 LINE L2 3224 3263 -9 2764 143 11 11 chr9 45362804 45363259 -72499368 - L1PA15 LINE L1 0 6165 5711 21 36 0 0 chr9 45363563 45363591 -72499036 + AT_rich Low_complexity Low_complexity 1 28 0 2052 155 3 0 chr9 45364313 45364617 -72498010 - AluSx SINE Alu -7 305 1 214 174 0 22 chr9 45364783 45364829 -72497798 - MIR3 SINE MIR -3 205 161 325 290 68 103 chr9 45364829 45364986 -72497641 + HAL1 LINE L1 1527 1673 -834 4332 167 31 25 chr9 45364986 45365877 -72496750 - L1MD2 LINE L1 -14 6345 5449 325 290 68 103 chr9 45365877 45365971 -72496656 + HAL1 LINE L1 1673 1769 -738 492 278 101 22 chr9 45367196 45367423 -72495204 - MIR SINE MIR -10 252 8 21 0 0 0 chr9 45367712 45367733 -72494894 + AT_rich Low_complexity Low_complexity 1 21 0 1637 191 0 20 chr9 45369401 45369700 -72492927 - AluJo SINE Alu -19 293 1 49 18 0 0 chr9 45370797 45370853 -72491774 + AT_rich Low_complexity Low_complexity 1 56 0 195 342 54 36 chr9 45371124 45371235 -72491392 - L2 LINE L2 -9 3263 3151 242 191 0 44 chr9 45371709 45371777 -72490850 - L1MC4 LINE L1 -1330 6712 6648 1091 210 188 49 chr9 45372581 45372660 -72489967 - L1MC5 LINE L1 -58 7903 7836 219 36 0 0 chr9 45372660 45372688 -72489939 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1091 210 188 49 chr9 45372688 45373266 -72489361 - L1MC5 LINE L1 -125 7836 7154 244 228 0 18 chr9 45373303 45373360 -72489267 + L2 LINE L2 3258 3313 0 2369 105 3 0 chr9 45374472 45374778 -72487849 + AluSp SINE Alu 1 307 -6 1798 159 33 0 chr9 45374993 45375269 -72487358 + AluJb SINE Alu 5 289 -23 234 275 37 46 chr9 45375396 45375505 -72487122 + L2 LINE L2 2521 2628 -686 604 248 105 50 chr9 45375889 45376127 -72486500 - MIR SINE MIR -3 259 9 2368 88 0 3 chr9 45377814 45378151 -72484476 + AluY SINE Alu 1 311 0 706 246 40 6 chr9 45378395 45378570 -72484057 - MIR SINE MIR -1 261 81 2379 87 0 0 chr9 45379973 45380271 -72482356 + AluSg SINE Alu 1 298 -12 764 212 158 5 chr9 45380448 45380651 -72481976 + MIR SINE MIR 12 245 -17 2246 134 0 0 chr9 45381465 45381771 -72480856 - AluSx SINE Alu -6 306 1 421 335 69 30 chr9 45382396 45382599 -72480028 + MIR SINE MIR 22 232 -30 2400 104 0 0 chr9 45382677 45382985 -72479642 - AluSx SINE Alu -4 308 1 216 200 0 0 chr9 45383047 45383102 -72479525 + CT-rich Low_complexity Low_complexity 2 56 0 387 60 0 0 chr9 45383102 45383152 -72479475 + (CA)n Simple_repeat Simple_repeat 1 50 0 667 219 16 0 chr9 45383497 45383620 -72479007 + FLAM_A SINE Alu 1 125 -8 21 0 0 0 chr9 45383620 45383641 -72478986 + AT_rich Low_complexity Low_complexity 1 21 0 2112 92 0 18 chr9 45383912 45384196 -72478431 + AluSx SINE Alu 30 308 -4 2140 100 14 0 chr9 45384500 45384791 -72477836 + AluSx SINE Alu 1 295 -17 352 179 51 43 chr9 45385891 45386008 -72476619 + L1ME4a LINE L1 5724 5841 -280 1393 201 34 44 chr9 45386111 45386450 -72476177 + L1M4 LINE L1 2701 3037 -3109 2178 106 43 7 chr9 45386450 45386751 -72475876 + AluSx SINE Alu 1 312 0 1393 201 34 44 chr9 45386751 45386824 -72475803 + L1M4 LINE L1 3037 3109 -3037 258 223 117 0 chr9 45386810 45386913 -72475714 + L1ME4a LINE L1 5982 6096 -25 * 735 239 135 74 chr9 45387108 45387827 -72474800 - L1ME4a LINE L1 -4 6117 5355 1985 161 10 0 chr9 45388114 45388413 -72474214 - AluSx SINE Alu -10 302 1 316 162 103 0 chr9 45388578 45388646 -72473981 + HsTC2 DNA Tc2 1824 1898 0 4588 159 51 38 chr9 45388763 45388880 -72473747 - L1MB7 LINE L1 0 6184 6070 2096 121 3 10 chr9 45388880 45389189 -72473438 - AluSx SINE Alu 0 312 2 4588 159 51 38 chr9 45389189 45390757 -72471870 - L1MB7 LINE L1 -114 6070 4490 262 282 36 9 chr9 45390849 45390959 -72471668 - L1ME4a LINE L1 -1140 5006 4894 2261 105 0 7 chr9 45391200 45391504 -72471123 + AluSg SINE Alu 1 302 -8 235 211 58 0 chr9 45391629 45391681 -72470946 + MIR SINE MIR 73 127 -135 26 74 0 0 chr9 45392828 45392882 -72469745 + AT_rich Low_complexity Low_complexity 1 54 0 22 35 0 0 chr9 45393188 45393217 -72469410 + AT_rich Low_complexity Low_complexity 1 29 0 2104 117 0 4 chr9 45393230 45393511 -72469116 + AluSx SINE Alu 1 280 -32 189 0 0 0 chr9 45393513 45393534 -72469093 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 233 274 0 0 chr9 45393711 45393762 -72468865 + (CA)n Simple_repeat Simple_repeat 2 52 0 945 65 0 0 chr9 45393918 45394025 -72468602 - U6 snRNA snRNA 0 107 1 854 228 71 49 chr9 45394214 45394538 -72468089 - L1ME4a LINE L1 -1977 4169 3839 12853 84 13 1 chr9 45394951 45396701 -72465926 - L1P LINE L1 -2289 3857 2087 1099 215 97 99 chr9 45396702 45397198 -72465429 - MLT1E2 LTR MaLR -157 492 1 1413 181 4 16 chr9 45399224 45399467 -72463160 + MLT1D LTR MaLR 1 240 -265 484 110 0 14 chr9 45399467 45399540 -72463087 + L1MA3 LINE L1 6197 6268 -37 243 88 0 0 chr9 45400499 45400533 -72462094 + (TGG)n Simple_repeat Simple_repeat 1 34 0 324 181 120 30 chr9 45400869 45401002 -72461625 - LTR67 LTR ERVL -2 555 411 186 133 0 0 chr9 45401701 45401731 -72460896 + (A)n Simple_repeat Simple_repeat 1 30 0 2099 101 7 10 chr9 45403195 45403491 -72459136 - AluSx SINE Alu -17 295 1 587 258 77 16 chr9 45403632 45403814 -72458813 - MIR SINE MIR 0 262 70 25 31 0 0 chr9 45404008 45404040 -72458587 + AT_rich Low_complexity Low_complexity 1 32 0 2164 86 30 23 chr9 45404436 45404739 -72457888 - AluY SINE Alu -6 305 1 656 251 38 0 chr9 45404873 45405056 -72457571 + MIR SINE MIR 67 256 -6 1718 156 39 3 chr9 45406395 45406511 -72456116 + AluJo SINE Alu 1 111 -201 204 40 0 0 chr9 45406511 45406536 -72456091 + (CAA)n Simple_repeat Simple_repeat 3 27 0 1718 156 39 3 chr9 45406536 45406702 -72455925 + AluJo SINE Alu 111 293 -19 235 359 0 0 chr9 45407368 45407432 -72455195 + MER5A DNA MER1_type 108 171 -18 2407 163 7 10 chr9 45407701 45408105 -72454522 - MER57A LTR ERV1 0 403 1 4425 232 87 95 chr9 45409774 45411577 -72451050 - HAL1 LINE L1 -2 2505 720 1780 165 37 3 chr9 45411577 45411874 -72450753 + AluJb SINE Alu 1 307 -5 4425 232 87 95 chr9 45411874 45412188 -72450439 - HAL1 LINE L1 -1787 720 405 558 271 50 18 chr9 45412191 45412412 -72450215 - HAL1 LINE L1 -2262 245 18 261 318 45 36 chr9 45412424 45412534 -72450093 - MIR SINE MIR -68 140 30 246 313 0 0 chr9 45413922 45414005 -72448622 - MIR SINE MIR -27 235 153 1995 137 10 0 chr9 45414232 45414532 -72448095 + AluSx SINE Alu 1 303 -9 713 230 69 95 chr9 45415012 45415424 -72447203 - MLT1L LTR MaLR -33 565 111 1457 213 78 47 chr9 45415453 45415900 -72446727 - MER39 LTR ERV1 -3 704 244 2108 136 3 0 chr9 45415908 45416216 -72446411 - AluJb SINE Alu -3 309 1 247 191 60 60 chr9 45416292 45416376 -72446251 - MLT1L LTR MaLR -529 86 3 29 0 0 0 chr9 45416694 45416723 -72445904 + AT_rich Low_complexity Low_complexity 1 29 0 2995 256 121 39 chr9 45417439 45418965 -72443662 - HAL1 LINE L1 -38 2469 819 2848 7 0 0 chr9 45418972 45419277 -72443350 + AluYb8 SINE Alu 1 305 -13 1027 199 35 22 chr9 45419288 45419514 -72443113 + L1MB8 LINE L1 5944 6172 -6 1767 238 78 30 chr9 45419524 45420092 -72442535 - HAL1 LINE L1 -1685 822 228 180 186 70 23 chr9 45420977 45421020 -72441607 + MIR3 SINE MIR 159 203 -5 489 234 42 115 chr9 45421158 45421275 -72441352 - MER45A DNA AcHobo -1403 178 79 2151 124 0 0 chr9 45421275 45421566 -72441061 + AluSx SINE Alu 12 302 -10 489 234 42 115 chr9 45421566 45421640 -72440987 - MER45A DNA AcHobo -1502 79 1 352 330 142 17 chr9 45422638 45422877 -72439750 + L3 LINE CR1 1306 1574 -3 353 279 163 7 chr9 45423145 45423292 -72439335 + MIR SINE MIR 68 237 -25 2186 117 0 26 chr9 45423727 45424036 -72438591 + AluSx SINE Alu 1 301 -11 2182 152 176 141 chr9 45424043 45424280 -72438347 + L1MC3 LINE L1 6850 7077 -708 283 300 30 0 chr9 45424280 45424380 -72438247 + MLT1F1 LTR MaLR 37 139 -428 2182 152 176 141 chr9 45424380 45424782 -72437845 + L1MC3 LINE L1 7077 7614 -171 270 287 52 9 chr9 45425625 45425740 -72436887 - L2 LINE L2 -3 3310 3191 292 311 26 40 chr9 45426094 45426245 -72436382 + MIR SINE MIR 41 189 -73 2042 113 57 0 chr9 45426281 45426564 -72436063 + AluSx SINE Alu 1 299 -13 30 0 0 0 chr9 45426739 45426769 -72435858 + AT_rich Low_complexity Low_complexity 1 30 0 251 261 42 78 chr9 45427025 45427130 -72435497 + MIR SINE MIR 81 181 -81 2557 53 0 0 chr9 45427130 45427433 -72435194 + AluY SINE Alu 1 303 -8 251 261 42 78 chr9 45427433 45427469 -72435158 + MIR SINE MIR 181 217 -45 441 357 7 7 chr9 45428055 45428198 -72434429 - MIR3 SINE MIR -46 162 20 7185 58 11 0 chr9 45429017 45430415 -72432212 - L1PA7 LINE L1 0 6154 4769 1722 147 0 15 chr9 45430441 45430700 -72431927 + AluSx SINE Alu 40 294 -18 232 193 60 60 chr9 45430706 45430789 -72431838 - MER63 DNA MER1_type -846 84 2 406 119 0 0 chr9 45431247 45431314 -72431313 + Alu SINE Alu 241 307 -4 1877 139 29 0 chr9 45431939 45432213 -72430414 - AluJb SINE Alu -30 282 1 220 175 0 88 chr9 45432374 45432431 -72430196 + MER5A DNA MER1_type 137 188 -1 1831 169 7 0 chr9 45433128 45433412 -72429215 - AluJb SINE Alu -26 286 1 2934 134 49 9 chr9 45433635 45434083 -72428544 - MLT1C LTR MaLR -1 466 1 307 276 66 55 chr9 45434386 45434567 -72428060 - MIR3 SINE MIR -7 201 19 2337 149 3 20 chr9 45434619 45434962 -72427665 - MER1B DNA MER1_type 0 337 1 1328 173 8 16 chr9 45435283 45435531 -72427096 + AluSx SINE Alu 1 246 -66 1858 108 46 0 chr9 45435645 45435904 -72426723 + AluY SINE Alu 34 304 -7 2141 114 10 0 chr9 45436983 45437290 -72425337 + AluSp SINE Alu 1 310 -3 2043 119 3 7 chr9 45437476 45437770 -72424857 + AluSp SINE Alu 6 298 -15 201 74 0 0 chr9 45437770 45437797 -72424830 + (GA)n Simple_repeat Simple_repeat 1 27 0 1932 140 3 14 chr9 45438169 45438486 -72424141 + AluSx SINE Alu 1 314 0 195 23 93 23 chr9 45438552 45438595 -72424032 + (TAAA)n Simple_repeat Simple_repeat 4 49 0 2115 129 0 0 chr9 45438602 45438916 -72423711 + AluSg SINE Alu 2 315 0 411 248 8 32 chr9 45438916 45439041 -72423586 + L1ME3A LINE L1 5830 5951 -219 21 57 0 0 chr9 45439269 45439304 -72423323 + AT_rich Low_complexity Low_complexity 1 35 0 262 275 17 50 chr9 45439527 45439568 -72423059 - L1ME LINE L1 -393 5728 5687 1874 103 32 0 chr9 45439568 45439747 -72422880 - AluSq SINE Alu -3 310 119 180 0 0 0 chr9 45439747 45439767 -72422860 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1874 103 32 0 chr9 45439767 45439840 -72422787 - AluSq SINE Alu -194 119 50 262 275 17 50 chr9 45439840 45439918 -72422709 - L1ME LINE L1 -434 5687 5613 183 264 14 69 chr9 45439918 45439990 -72422637 - MIR SINE MIR -132 130 63 2455 57 0 7 chr9 45440047 45440347 -72422280 + AluY SINE Alu 1 298 -13 810 160 32 0 chr9 45440357 45440482 -72422145 + FLAM_A SINE Alu 1 129 -4 2124 118 13 3 chr9 45441063 45441367 -72421260 + AluSx SINE Alu 5 311 -1 2149 109 0 19 chr9 45441368 45441681 -72420946 + AluY SINE Alu 2 308 -3 2376 91 0 3 chr9 45441681 45441987 -72420640 + AluSx SINE Alu 1 306 -6 982 228 73 96 chr9 45442135 45442242 -72420385 - L1MC5 LINE L1 -369 7592 7484 2025 116 61 0 chr9 45442242 45442536 -72420091 - AluSp SINE Alu -1 312 1 982 228 73 96 chr9 45442536 45442584 -72420043 - L1MC5 LINE L1 -477 7484 7436 1840 171 10 3 chr9 45442584 45442894 -72419733 - AluJb SINE Alu 0 312 1 300 192 13 22 chr9 45442846 45442913 -72419714 - Alu SINE Alu -253 47 1 * 982 228 73 96 chr9 45442913 45443268 -72419359 - L1MC5 LINE L1 -544 7417 7074 232 271 102 8 chr9 45443283 45443401 -72419226 - LTR16C LTR ERVL -2 489 361 1178 115 0 5 chr9 45443672 45443881 -72418746 - AluSq SINE Alu -10 303 1 2356 69 0 3 chr9 45443892 45444198 -72418429 - AluSg SINE Alu -5 305 1 1197 216 36 89 chr9 45444338 45444879 -72417748 - L1MC5 LINE L1 -824 6984 6558 2037 108 10 3 chr9 45444935 45445242 -72417385 + AluY SINE Alu 1 309 -2 624 128 0 49 chr9 45445384 45445486 -72417141 - AluSg/x SINE Alu -39 273 177 638 182 68 30 chr9 45445608 45445625 -72417002 - AluSq/x SINE Alu -162 150 135 1986 116 17 0 chr9 45445625 45445927 -72416700 - AluSg SINE Alu -3 307 1 638 182 68 30 chr9 45445927 45446041 -72416586 - AluSq/x SINE Alu -177 135 14 1890 127 3 10 chr9 45446080 45446379 -72416248 - AluSx SINE Alu -14 298 2 412 260 207 53 chr9 45446454 45446551 -72416076 - L1MC4a LINE L1 -1598 6210 6129 2156 77 0 89 chr9 45446551 45446887 -72415740 - AluSg1 SINE Alu -3 306 1 412 260 207 53 chr9 45446887 45447074 -72415553 - L1MC4a LINE L1 -1679 6129 5882 2042 119 7 0 chr9 45447205 45447499 -72415128 - AluSg SINE Alu -14 296 1 739 151 19 141 chr9 45447634 45447674 -72414953 - L1MB3 LINE L1 -10 6173 6130 1901 116 10 23 chr9 45447674 45447977 -72414650 - AluSx SINE Alu -13 299 1 2381 67 0 6 chr9 45447987 45448300 -72414327 - AluY SINE Alu 0 311 1 739 151 19 141 chr9 45448300 45448336 -72414291 - L1MB3 LINE L1 -63 6120 6081 3224 145 24 112 chr9 45448336 45448908 -72413719 + LTR8 LTR ERV1 1 491 -200 1986 96 16 13 chr9 45448908 45449211 -72413416 + AluSq SINE Alu 1 304 -9 3224 145 24 112 chr9 45449211 45449396 -72413231 + LTR8 LTR ERV1 491 691 0 739 151 19 141 chr9 45449396 45449513 -72413114 - L1MB3 LINE L1 -102 6081 5993 209 230 14 40 chr9 45450238 45450312 -72412315 + C-rich Low_complexity Low_complexity 4 75 0 24 0 0 0 chr9 45450556 45450580 -72412047 + GC_rich Low_complexity Low_complexity 1 24 0 1951 105 27 7 chr9 45451691 45451985 -72410642 - AluSg SINE Alu -10 300 1 2862 161 98 0 chr9 45452051 45452580 -72410047 - L1MA9 LINE L1 0 6312 5732 199 274 59 0 chr9 45452642 45452693 -72409934 + L2 LINE L2 3217 3270 -2 584 195 47 20 chr9 45452748 45452897 -72409730 - L1ME3 LINE L1 -7 6155 6003 408 220 18 18 chr9 45452905 45453014 -72409613 - L1M4 LINE L1 -1080 5066 4958 184 323 68 38 chr9 45454639 45454772 -72407855 - MIR SINE MIR -62 200 64 232 326 12 0 chr9 45454986 45455072 -72407555 + HAL1 LINE L1 2078 2164 -343 340 282 115 60 chr9 45455357 45455609 -72407018 + HAL1 LINE L1 2241 2506 -1 2080 104 7 17 chr9 45456513 45456811 -72405816 + AluSx SINE Alu 1 295 -17 297 275 47 71 chr9 45457476 45457687 -72404940 + L2 LINE L2 3094 3299 -14 1258 167 4 21 chr9 45457860 45458100 -72404527 + AluJo SINE Alu 54 289 -23 520 243 53 48 chr9 45458124 45458313 -72404314 - MIR SINE MIR -52 210 21 217 304 58 0 chr9 45458957 45459026 -72403601 + MIR SINE MIR 51 123 -85 435 268 144 36 chr9 45459108 45459287 -72403340 - Charlie8 DNA MER1_type -64 277 62 2281 99 0 0 chr9 45459287 45459590 -72403037 - AluSx SINE Alu -9 303 1 435 268 144 36 chr9 45459590 45459660 -72402967 - Charlie8 DNA MER1_type -279 62 1 3325 185 53 14 chr9 45459832 45460524 -72402103 - L1ME3 LINE L1 -204 5974 5256 21 0 0 0 chr9 45460985 45461006 -72401621 + AT_rich Low_complexity Low_complexity 1 21 0 1953 133 3 0 chr9 45461009 45461295 -72401332 + AluSq SINE Alu 1 287 -26 180 0 0 0 chr9 45461295 45461315 -72401312 + (TTAA)n Simple_repeat Simple_repeat 2 21 0 2077 120 7 0 chr9 45461320 45461620 -72401007 + AluSx SINE Alu 1 302 -10 1012 206 73 46 chr9 45461632 45461654 -72400973 + L1MC4 LINE L1 7717 7737 -258 2203 133 14 11 chr9 45461654 45462008 -72400619 - THE1A LTR MaLR 0 355 1 1012 206 73 46 chr9 45462008 45462312 -72400315 + L1MC4 LINE L1 7737 7995 0 24 32 0 0 chr9 45462373 45462404 -72400223 + AT_rich Low_complexity Low_complexity 1 31 0 2260 93 0 0 chr9 45462656 45462956 -72399671 + AluSg SINE Alu 7 306 -4 21 0 0 0 chr9 45462978 45462999 -72399628 + AT_rich Low_complexity Low_complexity 1 21 0 2105 111 0 7 chr9 45463533 45463831 -72398796 + AluSx SINE Alu 1 296 -16 952 230 11 0 chr9 45464029 45464216 -72398411 + MER5A DNA MER1_type 1 189 0 209 238 0 0 chr9 45464225 45464267 -72398360 + A-rich Low_complexity Low_complexity 1 42 0 2223 91 0 0 chr9 45464508 45464795 -72397832 - AluSc SINE Alu -20 289 3 252 282 167 51 chr9 45465490 45465646 -72396981 + MIR SINE MIR 20 193 -69 2176 65 14 17 chr9 45465805 45466097 -72396530 - AluSp SINE Alu -22 291 1 797 258 40 41 chr9 45466374 45466393 -72396234 + L2 LINE L2 2767 2785 -528 2106 138 0 0 chr9 45466393 45466705 -72395922 + AluSx SINE Alu 1 312 0 2264 57 0 14 chr9 45466712 45467009 -72395618 + AluY SINE Alu 1 293 -18 797 258 40 41 chr9 45467009 45467299 -72395328 + L2 LINE L2 2791 3091 -222 2303 89 0 3 chr9 45467872 45468176 -72394451 - AluSq SINE Alu -10 303 1 1284 188 56 19 chr9 45468189 45468513 -72394114 - Charlie1b DNA MER1_type -144 379 44 205 241 193 12 chr9 45468598 45468681 -72393946 + MIR SINE MIR 47 144 -64 1331 178 0 40 chr9 45468734 45469009 -72393618 + AluJo SINE Alu 47 310 -2 292 74 74 0 chr9 45469009 45469063 -72393564 + GA-rich Low_complexity Low_complexity 2 59 0 204 125 0 0 chr9 45469062 45469094 -72393533 + (GAAA)n Simple_repeat Simple_repeat 4 35 0 * 2414 77 3 0 chr9 45469358 45469669 -72392958 + AluSp SINE Alu 1 312 -1 1665 151 72 0 chr9 45471895 45472186 -72390441 - AluSx SINE Alu 0 312 1 1371 196 121 34 chr9 45472763 45473162 -72389465 - MLT1C LTR MaLR -15 410 6 274 208 19 0 chr9 45473367 45473420 -72389207 + MER5B DNA MER1_type 88 141 -37 1905 183 10 63 chr9 45474242 45474652 -72387975 - MLT1B LTR MaLR -2 388 1 1953 109 13 35 chr9 45474729 45475041 -72387586 - AluSx SINE Alu -7 305 1 1598 156 203 11 chr9 45475270 45475629 -72386998 - MSTA LTR MaLR 0 428 1 1887 156 0 0 chr9 45476537 45476839 -72385788 + AluSx SINE Alu 3 304 -8 36 62 0 0 chr9 45477804 45477868 -72384759 + AT_rich Low_complexity Low_complexity 1 64 0 393 70 0 0 chr9 45478148 45478205 -72384422 + (TG)n Simple_repeat Simple_repeat 2 58 0 2009 70 44 11 chr9 45479215 45479511 -72383116 - AluSp SINE Alu 0 307 3 205 342 13 13 chr9 45479530 45479606 -72383021 - L3 LINE CR1 -9 1568 1493 1629 151 60 37 chr9 45479708 45480007 -72382620 - AluJo SINE Alu -6 306 1 577 330 45 15 chr9 45480369 45480633 -72381994 - L3 LINE CR1 -287 1290 1019 320 313 36 54 chr9 45481291 45481410 -72381217 - MIR SINE MIR -73 189 72 2126 102 0 0 chr9 45481410 45481704 -72380923 + AluY SINE Alu 1 294 -17 320 313 36 54 chr9 45481704 45481750 -72380877 - MIR SINE MIR -190 72 27 728 304 89 20 chr9 45483202 45483560 -72379067 - MLT1I LTR MaLR 0 409 27 867 210 21 59 chr9 45484326 45484468 -72378159 - L1ME3 LINE L1 0 6162 6031 2301 83 0 3 chr9 45484468 45484770 -72377857 - AluSg SINE Alu -9 301 1 867 210 21 59 chr9 45484770 45484865 -72377762 - L1ME3 LINE L1 -131 6031 5934 1958 111 4 4 chr9 45484895 45485174 -72377453 - AluSx SINE Alu -11 301 23 2174 113 0 3 chr9 45485337 45485637 -72376990 + AluSq SINE Alu 1 299 -14 315 245 38 66 chr9 45485701 45485807 -72376820 - MIR SINE MIR -73 189 87 2006 134 0 0 chr9 45486167 45486465 -72376162 + AluSx SINE Alu 1 298 -14 538 252 60 7 chr9 45487311 45487462 -72375165 - MIR SINE MIR -52 210 52 262 291 55 27 chr9 45487471 45487542 -72375085 + LTR37B LTR ERV1 10 83 -385 991 179 22 49 chr9 45487542 45487719 -72374908 + MER20 DNA MER1_type 2 173 -46 2093 162 21 3 chr9 45487719 45488059 -72374568 - MER7A DNA MER2_type -1 345 2 991 179 22 49 chr9 45488059 45488105 -72374522 + MER20 DNA MER1_type 173 219 0 25 0 0 0 chr9 45488188 45488213 -72374414 + AT_rich Low_complexity Low_complexity 1 25 0 271 245 0 0 chr9 45488216 45488265 -72374362 + AluJ/monomer SINE Alu 4 52 -247 1528 109 23 0 chr9 45488265 45488485 -72374142 + AluSg/x SINE Alu 84 308 -2 886 185 68 53 chr9 45488521 45488699 -72373928 + LTR37B LTR ERV1 197 382 -86 1894 186 10 47 chr9 45488699 45488989 -72373638 - MLT1B LTR MaLR 0 390 118 2263 66 3 30 chr9 45488989 45489292 -72373335 - AluSx SINE Alu -17 295 1 1894 186 10 47 chr9 45489292 45489404 -72373223 - MLT1B LTR MaLR -272 118 3 886 185 68 53 chr9 45489404 45489490 -72373137 + LTR37B LTR ERV1 382 465 -3 2296 177 55 123 chr9 45489541 45490265 -72372362 - LTR8A LTR ERV1 -19 708 34 181 197 92 53 chr9 45490695 45490771 -72371856 + L2 LINE L2 1643 1721 -1593 1241 261 95 67 chr9 45491341 45491685 -72370942 - MLT1G1 LTR MaLR 0 595 227 1792 156 3 41 chr9 45491685 45492005 -72370622 + AluJo SINE Alu 2 309 -3 1241 261 95 67 chr9 45492005 45492239 -72370388 - MLT1G1 LTR MaLR -368 227 1 184 314 124 32 chr9 45492356 45492541 -72370086 - L2 LINE L2 -427 2887 2686 1099 171 5 11 chr9 45492586 45492773 -72369854 - MER5A DNA MER1_type 0 189 4 2080 80 14 0 chr9 45493185 45493489 -72369138 + AluSq SINE Alu 5 312 0 862 112 62 96 chr9 45493634 45493812 -72368815 - MER20 DNA MER1_type -1 218 47 1043 181 12 0 chr9 45494203 45494374 -72368253 - FAM SINE Alu -2 173 1 1779 172 0 0 chr9 45494488 45494785 -72367842 + AluJb SINE Alu 1 297 -15 1811 38 4 42 chr9 45494786 45495026 -72367601 + AluY SINE Alu 49 279 -32 189 0 0 0 chr9 45495026 45495047 -72367580 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 759 212 60 18 chr9 45495053 45495270 -72367357 - MIR SINE MIR -2 260 35 201 196 87 0 chr9 45495446 45495492 -72367135 + L2 LINE L2 3223 3272 0 220 118 20 20 chr9 45496195 45496246 -72366381 + (TG)n Simple_repeat Simple_repeat 2 52 0 442 332 9 59 chr9 45496339 45496559 -72366068 + MIR SINE MIR 9 217 -45 263 299 0 0 chr9 45496904 45496971 -72365656 + Charlie8 DNA MER1_type 50 116 -2301 1833 94 3 123 chr9 45496990 45497332 -72365295 + AluSx SINE Alu 1 301 -1 1975 79 75 0 chr9 45497521 45497800 -72364827 - AluSp SINE Alu -13 300 1 920 184 101 73 chr9 45498234 45498392 -72364235 - Charlie5 DNA MER1_type -4 2620 2468 1592 110 35 0 chr9 45498392 45498620 -72364007 + AluSq SINE Alu 1 236 -77 920 184 101 73 chr9 45498620 45498819 -72363808 - Charlie5 DNA MER1_type -156 2468 2253 2315 77 0 10 chr9 45498819 45499118 -72363509 + AluSx SINE Alu 1 296 -16 615 184 9 0 chr9 45499153 45499262 -72363365 - Charlie5 DNA MER1_type -2501 111 2 2415 123 95 5 chr9 45499603 45499994 -72362633 - MSTC LTR MaLR -2 426 1 2235 64 0 0 chr9 45500236 45500545 -72362082 + AluY SINE Alu 2 310 0 1832 143 113 0 chr9 45500573 45500901 -72361726 + MLT1A1 LTR MaLR 1 365 0 586 309 106 16 chr9 45501091 45501460 -72361167 - L1ME3A LINE L1 -242 5928 5527 2157 103 10 0 chr9 45501809 45502110 -72360517 + AluSg SINE Alu 1 304 -6 610 115 62 26 chr9 45502726 45502839 -72359788 + MIR SINE MIR 24 140 -122 2381 218 77 26 chr9 45502848 45503263 -72359364 - MER82 DNA MER2_type -1 652 195 1624 153 0 65 chr9 45503263 45503444 -72359183 - AluJo SINE Alu -12 300 148 1852 150 3 0 chr9 45503444 45503731 -72358896 - AluSx SINE Alu -24 288 1 1624 153 0 65 chr9 45503731 45503870 -72358757 - AluJo SINE Alu -164 148 1 2381 218 77 26 chr9 45503870 45504068 -72358559 - MER82 DNA MER2_type -458 195 8 297 289 56 0 chr9 45504071 45504161 -72358466 + MIR SINE MIR 147 241 -21 632 212 141 5 chr9 45504892 45505076 -72357551 + MER3 DNA MER1_type 1 209 0 2077 83 36 7 chr9 45505170 45505472 -72357155 + AluSx SINE Alu 1 311 -1 1363 182 92 154 chr9 45505488 45506137 -72356490 - LTR36 LTR ERV1 -2 609 1 580 257 41 12 chr9 45506395 45506566 -72356061 - L1ME4a LINE L1 -230 5891 5716 486 210 50 8 chr9 45506828 45506947 -72355680 - MLT1J2 LTR MaLR -286 164 41 423 52 0 0 chr9 45507171 45507229 -72355398 + (CA)n Simple_repeat Simple_repeat 2 59 0 2087 109 10 0 chr9 45507573 45507866 -72354761 - AluSx SINE Alu -16 296 1 2150 100 10 3 chr9 45508171 45508472 -72354155 + AluSq SINE Alu 1 303 -10 1108 191 30 4 chr9 45509475 45509706 -72352921 - L1MB7 LINE L1 -3 6181 5945 1849 218 40 91 chr9 45509713 45510272 -72352355 - L1ME3A LINE L1 -9 6161 5642 1883 9 0 18 chr9 45510272 45510492 -72352135 + AluY SINE Alu 85 300 -11 1849 218 40 91 chr9 45510492 45510615 -72352012 - L1ME3A LINE L1 -528 5642 5514 273 240 40 0 chr9 45510721 45510796 -72351831 - L1ME4a LINE L1 -587 5575 5498 2319 71 3 0 chr9 45510798 45511093 -72351534 - AluSp SINE Alu -17 296 1 1418 166 64 4 chr9 45511104 45511395 -72351232 - AluJb SINE Alu 0 307 1 2166 93 0 13 chr9 45511860 45512161 -72350466 - AluSq SINE Alu -16 297 1 2018 121 3 13 chr9 45512163 45512470 -72350157 - AluSx SINE Alu -8 304 1 2509 56 0 0 chr9 45512551 45512856 -72349771 - AluY SINE Alu -6 305 1 749 166 115 19 chr9 45512874 45513031 -72349596 + FRAM SINE Alu 1 172 -4 21 82 0 0 chr9 45513059 45513108 -72349519 + AT_rich Low_complexity Low_complexity 1 49 0 590 93 0 0 chr9 45513408 45513483 -72349144 + AluSg/x SINE Alu 204 278 -32 447 106 0 0 chr9 45513483 45513549 -72349078 + (TGGA)n Simple_repeat Simple_repeat 4 69 0 330 235 139 17 chr9 45513551 45513666 -72348961 + MIR3 SINE MIR 1 129 -79 532 217 59 69 chr9 45513805 45514027 -72348600 - MER5B DNA MER1_type -26 152 6 1888 122 24 0 chr9 45514027 45514314 -72348313 - AluSx SINE Alu -18 294 1 1910 129 18 0 chr9 45514509 45514821 -72347806 - AluSx SINE Alu 0 317 1 2038 143 0 0 chr9 45515499 45515807 -72346820 - AluSx SINE Alu -3 309 2 42 0 0 0 chr9 45515851 45515893 -72346734 + AT_rich Low_complexity Low_complexity 1 42 0 1785 141 18 0 chr9 45515910 45516193 -72346434 - AluJo SINE Alu -24 288 1 957 223 74 40 chr9 45516195 45516491 -72346136 - MER49 LTR ERV1 -19 904 599 699 198 0 0 chr9 45516523 45516644 -72345983 + FRAM SINE Alu 29 149 -27 594 160 66 9 chr9 45516644 45516750 -72345877 - MER72 LTR ERV1 -405 317 206 1996 106 3 7 chr9 45516755 45517038 -72345589 - AluSx SINE Alu -10 302 21 313 105 18 105 chr9 45517040 45517097 -72345530 - Alu SINE Alu -261 42 1 * 1059 176 29 24 chr9 45517097 45517298 -72345329 - MER72 LTR ERV1 -520 202 1 475 274 53 98 chr9 45517756 45518022 -72344605 + L2 LINE L2 3017 3270 -2 1795 121 108 82 chr9 45518619 45518806 -72343821 - MER57A LTR ERV1 -4 399 218 2381 73 0 0 chr9 45518806 45519108 -72343519 + AluY SINE Alu 6 307 -4 1795 121 108 82 chr9 45519108 45519309 -72343318 - MER57A LTR ERV1 -185 218 1 2082 115 3 19 chr9 45519406 45519720 -72342907 - AluSx SINE Alu -3 309 1 286 371 42 6 chr9 45519745 45519912 -72342715 + MIR SINE MIR 34 206 -56 2425 44 0 10 chr9 45520101 45520399 -72342228 + AluY SINE Alu 1 295 -16 3390 36 0 17 chr9 45521534 45521948 -72340679 - L1PA3 LINE L1 -1 6154 5748 638 183 30 0 chr9 45521992 45522123 -72340504 + L1MB7 LINE L1 5995 6129 -55 1488 203 14 0 chr9 45522128 45522424 -72340203 - AluJb SINE Alu -12 300 1 287 130 43 29 chr9 45522574 45522643 -72339984 + L1MB2 LINE L1 5890 5959 -224 957 171 68 22 chr9 45522693 45522915 -72339712 + L1MB2 LINE L1 5940 6171 0 1523 141 36 49 chr9 45522925 45523230 -72339397 + AluJo SINE Alu 1 301 -11 399 256 153 23 chr9 45523305 45523520 -72339107 + MIR SINE MIR 20 262 0 1762 159 23 0 chr9 45523693 45523995 -72338632 - AluJb SINE Alu -3 309 1 797 196 0 0 chr9 45525134 45525267 -72337360 + AluJo SINE Alu 2 134 -178 1730 149 10 7 chr9 45525275 45525571 -72337056 + AluJb SINE Alu 1 297 -15 27 0 0 0 chr9 45526874 45526901 -72335726 + AT_rich Low_complexity Low_complexity 1 27 0 192 40 0 0 chr9 45527627 45527652 -72334975 + (CAA)n Simple_repeat Simple_repeat 2 26 0 190 342 125 8 chr9 45527849 45527969 -72334658 - MIR3 SINE MIR -21 187 54 325 283 85 9 chr9 45527971 45528077 -72334550 - L2 LINE L2 -23 3249 3136 1973 138 7 3 chr9 45529095 45529400 -72333227 + AluSx SINE Alu 1 306 -6 1930 151 0 0 chr9 45529966 45530265 -72332362 + AluJb SINE Alu 7 305 -7 23 33 0 0 chr9 45530722 45530752 -72331875 + AT_rich Low_complexity Low_complexity 1 30 0 36 23 0 0 chr9 45530816 45530859 -72331768 + AT_rich Low_complexity Low_complexity 1 43 0 691 188 0 0 chr9 45530859 45530976 -72331651 - FLAM_C SINE Alu -18 125 9 228 189 0 38 chr9 45531411 45531464 -72331163 + L2 LINE L2 3041 3091 -181 1078 152 20 35 chr9 45531751 45531808 -72330819 + L1MB5 LINE L1 5971 6027 -147 1295 176 162 10 chr9 45531808 45532104 -72330523 - MER2 DNA MER2_type -1 343 3 1078 152 20 35 chr9 45532104 45532244 -72330383 + L1MB5 LINE L1 6027 6165 -9 206 163 0 23 chr9 45532850 45532893 -72329734 + T-rich Low_complexity Low_complexity 1 42 0 332 257 53 88 chr9 45533625 45533796 -72328831 + MIR3 SINE MIR 44 208 0 2057 102 3 3 chr9 45533915 45534229 -72328398 + AluSx SINE Alu 1 314 0 906 123 96 0 chr9 45534401 45534547 -72328080 + AluSg/x SINE Alu 135 294 -16 770 203 0 0 chr9 45534632 45534765 -72327862 + FLAM_A SINE Alu 1 133 0 1912 127 0 7 chr9 45535189 45535496 -72327131 + AluSx SINE Alu 1 305 0 1365 175 100 4 chr9 45535738 45536007 -72326620 - AluJb SINE Alu -6 306 12 2243 83 0 0 chr9 45536935 45537225 -72325402 - AluSg1 SINE Alu -19 290 1 2084 108 7 0 chr9 45537661 45537949 -72324678 + AluSq SINE Alu 1 290 -23 316 286 0 62 chr9 45538166 45538278 -72324349 - MER91C DNA MER1_type 0 140 36 181 303 146 38 chr9 45538323 45538508 -72324119 + L2 LINE L2 2495 2699 -615 421 258 39 16 chr9 45538908 45539036 -72323591 + L2 LINE L2 3180 3310 -3 198 376 64 18 chr9 45539416 45539525 -72323102 + L2 LINE L2 3133 3246 -26 447 154 0 13 chr9 45539538 45539616 -72323011 + L1PA16 LINE L1 4533 4609 -1537 1767 97 0 0 chr9 45539621 45539858 -72322769 - AluSq SINE Alu -7 306 70 1244 105 0 17 chr9 45540056 45540219 -72322408 + AluSg/x SINE Alu 123 287 -25 221 0 35 0 chr9 45540219 45540248 -72322379 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 5395 131 32 13 chr9 45540248 45540643 -72321984 + L1PA16 LINE L1 4649 5035 -1131 1906 121 30 7 chr9 45540643 45540940 -72321687 + AluSx SINE Alu 1 304 -8 5395 131 32 13 chr9 45540940 45542053 -72320574 + L1PA16 LINE L1 5035 6165 -1 1244 105 0 17 chr9 45542053 45542069 -72320558 + AluSg/x SINE Alu 285 300 -12 874 152 0 0 chr9 45542273 45542405 -72320222 - AluJb SINE Alu -28 284 153 488 232 69 102 chr9 45542412 45542844 -72319783 + HAL1 LINE L1 1043 1519 -988 1954 209 41 41 chr9 45542865 45543407 -72319220 + MER34 LTR ERV1 1 542 0 651 268 83 40 chr9 45543481 45543768 -72318859 + HAL1 LINE L1 2012 2320 -187 2102 124 0 0 chr9 45543768 45544066 -72318561 - AluSx SINE Alu -14 298 1 651 268 83 40 chr9 45544066 45544151 -72318476 + HAL1 LINE L1 2320 2400 -107 1444 170 99 9 chr9 45544169 45544607 -72318020 + LTR54 LTR ERV1 1 496 -2 2216 122 0 0 chr9 45544643 45544955 -72317672 + AluSx SINE Alu 1 312 0 22 0 0 0 chr9 45545054 45545076 -72317551 + AT_rich Low_complexity Low_complexity 1 22 0 2265 92 0 0 chr9 45545181 45545474 -72317153 + AluSx SINE Alu 11 303 -9 1498 152 29 83 chr9 45545517 45545655 -72316972 + Charlie1 DNA MER1_type 2343 2487 -274 4388 132 50 17 chr9 45545655 45546354 -72316273 - MER72 LTR ERV1 0 722 1 1498 152 29 83 chr9 45546354 45546384 -72316243 + Charlie1 DNA MER1_type 2487 2517 -244 1698 142 84 37 chr9 45546384 45546707 -72315920 + MER61A LTR ERV1 4 341 -2 1498 152 29 83 chr9 45546707 45546780 -72315847 + Charlie1 DNA MER1_type 2517 2592 -169 2335 160 25 2 chr9 45546780 45547173 -72315454 + MER57A LTR ERV1 1 402 -1 1498 152 29 83 chr9 45547173 45547206 -72315421 + Charlie1 DNA MER1_type 2592 2625 -136 1826 156 3 29 chr9 45547206 45547514 -72315113 - AluJb SINE Alu -12 300 1 1498 152 29 83 chr9 45547514 45547656 -72314971 + Charlie1 DNA MER1_type 2625 2739 -22 324 70 0 0 chr9 45547883 45547926 -72314701 + (TTCTCC)n Simple_repeat Simple_repeat 3 45 0 1868 119 0 4 chr9 45547926 45548203 -72314424 - AluY SINE Alu -34 277 2 2772 16 0 0 chr9 45548209 45548520 -72314107 - AluYb8 SINE Alu -7 311 1 1115 79 0 0 chr9 45548522 45548662 -72313965 - AluSq/x SINE Alu -172 140 1 1260 231 110 70 chr9 45548703 45549231 -72313396 - MER41C LTR ERV1 -5 549 1 2504 68 91 20 chr9 45549291 45549643 -72312984 + MER51B LTR ERV1 1 377 0 234 229 29 14 chr9 45550568 45550638 -72311989 + C-rich Low_complexity Low_complexity 3 73 0 22 56 0 0 chr9 45550916 45550952 -72311675 + AT_rich Low_complexity Low_complexity 1 36 0 195 100 0 0 chr9 45551140 45551170 -72311457 + (TG)n Simple_repeat Simple_repeat 1 30 0 395 268 127 28 chr9 45551355 45551497 -72311130 - L2 LINE L2 0 3272 3117 2074 87 19 35 chr9 45551614 45551925 -72310702 + AluSq SINE Alu 1 306 -7 4351 76 4 2 chr9 45552110 45552663 -72309964 - MER41A LTR ERV1 0 554 1 2012 119 27 0 chr9 45553209 45553503 -72309124 + AluSx SINE Alu 1 302 -10 671 209 47 74 chr9 45553607 45553713 -72308914 + MER63A DNA MER1_type 2 101 -1587 528 239 9 0 chr9 45553713 45553826 -72308801 - MER81 DNA DNA 0 114 1 671 209 47 74 chr9 45553826 45553934 -72308693 + MER63A DNA MER1_type 101 210 0 1914 193 34 48 chr9 45554016 45554268 -72308359 - MLT1C LTR MaLR 0 467 222 2163 122 0 0 chr9 45554268 45554580 -72308047 - AluSx SINE Alu 0 312 1 1914 193 34 48 chr9 45554580 45554767 -72307860 - MLT1C LTR MaLR -245 222 34 1671 180 0 33 chr9 45554768 45554953 -72307674 - AluJo SINE Alu -16 296 123 1761 141 3 42 chr9 45554953 45555265 -72307362 + AluSx SINE Alu 1 300 -12 1671 180 0 33 chr9 45555265 45555385 -72307242 - AluJo SINE Alu -189 123 1 1140 97 0 0 chr9 45555394 45555549 -72307078 - AluSg/x SINE Alu -2 310 156 842 167 177 74 chr9 45555556 45555771 -72306856 - SATR1 Satellite Satellite -44 426 190 255 279 15 15 chr9 45555774 45555842 -72306785 - AluJ/FLAM SINE Alu -233 69 2 533 291 104 5 chr9 45555970 45556190 -72306437 - L2 LINE L2 -6 3307 3066 500 118 24 0 chr9 45556190 45556275 -72306352 + CT-rich Low_complexity Low_complexity 4 90 0 648 95 0 171 chr9 45556289 45556358 -72306269 - L1MB3 LINE L1 -3 6180 6150 2003 117 0 3 chr9 45556358 45556663 -72305964 + AluSg SINE Alu 1 304 0 648 95 0 171 chr9 45556663 45556750 -72305877 - L1MB3 LINE L1 -33 6150 6050 368 321 27 9 chr9 45556758 45556870 -72305757 - L2 LINE L2 -240 3073 2960 2421 71 0 3 chr9 45557431 45557739 -72304888 - AluSx SINE Alu -5 307 1 851 249 73 23 chr9 45558305 45558566 -72304061 - MER46C DNA MER2_type 0 338 65 1246 102 17 0 chr9 45558714 45558891 -72303736 + AluSg/x SINE Alu 129 308 -2 1956 133 3 0 chr9 45559116 45559409 -72303218 + AluSx SINE Alu 1 294 -18 2145 124 7 0 chr9 45560140 45560446 -72302181 + AluSx SINE Alu 1 308 -4 28 48 0 0 chr9 45560448 45560490 -72302137 + AT_rich Low_complexity Low_complexity 1 42 0 1910 146 3 13 chr9 45560493 45560808 -72301819 + AluJb SINE Alu 1 312 0 221 119 0 71 chr9 45560855 45560897 -72301730 - L2 LINE L2 -8 3305 3267 1932 101 0 0 chr9 45561183 45561501 -72301126 - AluY SINE Alu 0 331 14 1847 111 45 0 chr9 45561691 45561979 -72300648 + AluY SINE Alu 1 301 -10 1702 155 7 13 chr9 45561990 45562294 -72300333 + AluJb SINE Alu 1 302 -10 249 267 188 30 chr9 45562767 45562868 -72299759 + L2 LINE L2 3197 3313 0 310 286 62 71 chr9 45562931 45563051 -72299576 - L1ME LINE L1 -343 5778 5659 2099 107 3 3 chr9 45563051 45563349 -72299278 - AluSx SINE Alu -14 298 1 310 286 62 71 chr9 45563349 45563452 -72299175 - L1ME LINE L1 -462 5659 5557 1072 130 19 0 chr9 45563456 45563618 -72299009 + AluSp SINE Alu 136 300 -13 4643 18 0 0 chr9 45563730 45564239 -72298388 - SVA Other Other -5 1381 873 1921 78 45 4 chr9 45564239 45564506 -72298121 - AluY SINE Alu -32 279 1 200 204 0 0 chr9 45564830 45564874 -72297753 + (TATATG)n Simple_repeat Simple_repeat 2 45 0 811 157 0 0 chr9 45565805 45565939 -72296688 + AluJo SINE Alu 1 134 -178 2110 103 3 0 chr9 45565939 45566247 -72296380 + AluSp SINE Alu 1 309 0 240 210 126 49 chr9 45566307 45566450 -72296177 - L1ME4a LINE L1 -109 6012 5859 812 75 0 0 chr9 45566618 45566724 -72295903 - AluY SINE Alu -3 308 203 2025 111 0 3 chr9 45566897 45567186 -72295441 + AluSx SINE Alu 10 297 -15 602 175 0 0 chr9 45569467 45569564 -72293063 + AluJb SINE Alu 155 251 -61 1163 146 33 113 chr9 45569564 45569847 -72292780 + L1ME1 LINE L1 5838 6093 -73 2126 77 7 7 chr9 45569847 45570157 -72292470 + AluSq SINE Alu 1 310 0 1163 146 33 113 chr9 45570157 45570207 -72292420 + L1ME1 LINE L1 6093 6145 -21 2382 204 41 19 chr9 45570228 45570791 -72291836 - L1M4 LINE L1 -3014 3132 2558 2386 70 3 0 chr9 45572613 45572915 -72289712 - AluSp SINE Alu -10 303 1 257 333 174 19 chr9 45573705 45573969 -72288658 - L2 LINE L2 -907 2407 2103 806 194 27 70 chr9 45574521 45574585 -72288042 - MER5B DNA MER1_type 0 178 113 2303 97 0 0 chr9 45574585 45574895 -72287732 + AluSx SINE Alu 1 310 -2 806 194 27 70 chr9 45574895 45575016 -72287611 - MER5B DNA MER1_type -65 113 1 340 266 81 102 chr9 45575059 45575442 -72287185 + Charlie8 DNA MER1_type 48 422 -1995 241 119 24 0 chr9 45575447 45575489 -72287138 + Charlie8 DNA MER1_type 2363 2405 -12 542 280 91 62 chr9 45575939 45576278 -72286349 + L2 LINE L2 2920 3268 -4 2190 71 0 11 chr9 45576278 45576587 -72286040 + AluSc SINE Alu 2 307 0 1094 114 0 13 chr9 45576600 45576757 -72285870 + MER4D LTR ERV1 1 155 -717 3715 110 13 59 chr9 45576757 45577365 -72285262 - LTR8 LTR ERV1 0 691 112 3217 131 14 73 chr9 45577364 45577448 -72285179 + MER4E LTR ERV1 190 277 -502 * 2136 81 0 39 chr9 45577448 45577755 -72284872 - AluSc SINE Alu -14 295 1 3217 131 14 73 chr9 45577755 45578163 -72284464 + MER4E LTR ERV1 277 640 -139 1972 72 16 85 chr9 45578163 45578482 -72284145 + AluY SINE Alu 1 297 -14 3217 131 14 73 chr9 45578482 45578615 -72284012 + MER4E LTR ERV1 640 779 0 785 266 99 65 chr9 45578794 45579298 -72283329 - LTR33A LTR ERVL -2 521 1 572 276 111 6 chr9 45579592 45579773 -72282854 + MIR SINE MIR 37 236 -26 1162 237 121 31 chr9 45579837 45580225 -72282402 - MLT1F LTR MaLR -119 423 1 1006 162 17 6 chr9 45580280 45580453 -72282174 - AluJb SINE Alu -21 291 117 1937 127 22 35 chr9 45630477 45630793 -72231834 + AluSx SINE Alu 1 312 0 287 273 188 17 chr9 45630798 45630974 -72231653 + HAL1b LINE L1 1125 1330 -18 2090 136 6 25 chr9 45631104 45631421 -72231206 + AluSx SINE Alu 1 311 -1 330 25 0 0 chr9 45631487 45631527 -72231100 + MADE1 DNA Mariner 41 80 0 2345 86 6 22 chr9 45632039 45632354 -72230273 + AluSq SINE Alu 1 310 -3 1924 144 3 26 chr9 45632917 45633229 -72229398 - AluSq SINE Alu -8 305 1 227 218 115 0 chr9 45633260 45633338 -72229289 + LTR66 LTR ERVL 357 443 -167 1653 169 10 30 chr9 45633416 45633717 -72228910 - AluJo SINE Alu -17 295 1 339 322 70 16 chr9 45633830 45634088 -72228539 - L1ME4a LINE L1 -133 5988 5717 555 302 77 86 chr9 45634127 45635001 -72227626 + L2 LINE L2 1837 2702 -612 2514 72 0 3 chr9 45635359 45635663 -72226964 - AluSc SINE Alu -5 304 2 242 181 99 51 chr9 45635673 45635790 -72226837 - L1ME4a LINE L1 -506 5658 5535 217 283 0 0 chr9 45635822 45635868 -72226759 - L2 LINE L2 -12 3260 3215 1088 179 0 28 chr9 45635908 45636120 -72226507 + MER3 DNA MER1_type 2 207 -2 23 78 0 0 chr9 45636273 45636324 -72226303 + AT_rich Low_complexity Low_complexity 1 51 0 872 119 0 0 chr9 45636324 45636442 -72226185 - FLAM_C SINE Alu -15 118 1 23 97 0 0 chr9 45637711 45637783 -72224844 + GC_rich Low_complexity Low_complexity 1 72 0 194 203 169 0 chr9 45639499 45639558 -72223069 - L2 LINE L2 -16 3256 3188 1125 141 0 11 chr9 45641197 45641374 -72221253 - AluSg/x SINE Alu -1 311 137 21 36 0 0 chr9 45642529 45642557 -72220070 + AT_rich Low_complexity Low_complexity 1 28 0 2569 43 30 0 chr9 45643062 45643364 -72219263 - AluY SINE Alu 0 311 1 2329 103 0 3 chr9 45644802 45645113 -72217514 - AluSg SINE Alu 0 310 1 2213 112 3 29 chr9 45646350 45646662 -72215965 - AluSp SINE Alu -9 304 1 651 180 0 0 chr9 45646673 45646795 -72215832 - L1MB4 LINE L1 -3 6177 6056 1526 219 52 49 chr9 45646799 45647265 -72215362 - L1ME3 LINE L1 -60 6102 5636 22 56 0 0 chr9 45647278 45647314 -72215313 + AT_rich Low_complexity Low_complexity 1 36 0 1732 147 83 0 chr9 45647314 45647580 -72215047 - AluSx SINE Alu -24 288 1 306 239 73 37 chr9 45647611 45647720 -72214907 + MIR SINE MIR 31 143 -119 2403 67 0 0 chr9 45647972 45648300 -72214327 - AluY SINE Alu 0 328 1 794 292 42 42 chr9 45648571 45648596 -72214031 - L1ME3A LINE L1 -208 5962 5938 502 180 20 0 chr9 45648596 45648696 -72213931 - L1MB2 LINE L1 -2 6169 6068 794 292 42 42 chr9 45648696 45649047 -72213580 - L1ME3A LINE L1 -231 5939 5586 303 290 10 20 chr9 45649401 45649501 -72213126 + L2 LINE L2 3214 3312 -1 519 125 125 0 chr9 45650555 45650643 -72211984 - AluSc SINE Alu 0 309 211 474 184 23 0 chr9 45650744 45650831 -72211796 + AluSg/x SINE Alu 209 297 -13 1984 130 0 42 chr9 45651067 45651375 -72211252 + AluSx SINE Alu 1 295 -17 293 102 0 85 chr9 45651812 45651871 -72210756 - FAM SINE Alu 0 179 126 1243 167 24 5 chr9 45651876 45652086 -72210541 - AluJo SINE Alu -98 214 1 2196 95 4 0 chr9 45652125 45652422 -72210205 + AluSg SINE Alu 6 303 0 416 263 155 52 chr9 45652435 45652854 -72209773 - L1MEd LINE L1 -5280 839 378 1334 152 58 55 chr9 45653933 45654242 -72208385 + L1MB7 LINE L1 5875 6184 0 748 244 71 36 chr9 45654257 45654482 -72208145 + MIR SINE MIR 29 261 -1 367 300 36 7 chr9 45654489 45654629 -72207998 - MIR SINE MIR -106 156 13 891 157 6 47 chr9 45654719 45654891 -72207736 + FRAM SINE Alu 1 165 -1 322 320 54 35 chr9 45655175 45655378 -72207249 - MIR SINE MIR -7 255 49 317 254 212 17 chr9 45656008 45656126 -72206501 + MER5A DNA MER1_type 47 187 -2 900 178 59 12 chr9 45656178 45656347 -72206280 + MER3 DNA MER1_type 1 130 -79 264 269 75 0 chr9 45656348 45656441 -72206186 - L1ME LINE L1 -338 5783 5684 1964 146 20 0 chr9 45657630 45657925 -72204702 + AluJb SINE Alu 1 301 -11 207 138 52 69 chr9 45658488 45658546 -72204081 + MIR SINE MIR 151 207 -55 786 196 0 0 chr9 45658546 45658679 -72203948 - FLAM_A SINE Alu 0 133 1 2258 112 0 3 chr9 45658808 45659104 -72203523 + AluSx SINE Alu 1 295 -17 610 229 30 75 chr9 45660059 45660260 -72202367 - L1ME LINE L1 -392 5729 5538 442 168 15 38 chr9 45660273 45660404 -72202223 + CT-rich Low_complexity Low_complexity 2 129 0 680 141 39 39 chr9 45660432 45660560 -72202067 - FLAM_C SINE Alu -1 132 5 1468 174 94 66 chr9 45661635 45661998 -72200629 - MLT2D LTR ERVL -41 373 1 1811 156 16 41 chr9 45662167 45662482 -72200145 - AluJb SINE Alu -5 307 1 2314 104 0 3 chr9 45662544 45662843 -72199784 + AluSq SINE Alu 6 303 -10 26 50 0 0 chr9 45662900 45662940 -72199687 + AT_rich Low_complexity Low_complexity 1 40 0 2237 109 0 0 chr9 45663294 45663588 -72199039 + AluSx SINE Alu 1 294 -18 2230 126 3 0 chr9 45663599 45663909 -72198718 + AluSq SINE Alu 1 311 -2 1267 206 103 41 chr9 45663944 45664040 -72198587 + MER2 DNA MER2_type 1 90 -255 1609 175 48 10 chr9 45664040 45664332 -72198295 + AluJo SINE Alu 1 303 -9 1267 206 103 41 chr9 45664332 45664555 -72198072 + MER2 DNA MER2_type 90 340 -5 652 289 4 38 chr9 45665183 45665422 -72197205 + MIR SINE MIR 18 248 -14 182 341 55 0 chr9 45665621 45665712 -72196915 + L2 LINE L2 2673 2768 -546 2421 85 0 7 chr9 45665729 45666036 -72196591 - AluSc SINE Alu -4 305 1 398 226 15 83 chr9 45666106 45666239 -72196388 + MLT1H LTR MaLR 23 146 -403 462 259 17 9 chr9 45666303 45666419 -72196208 + MLT1H LTR MaLR 420 536 -13 381 93 0 0 chr9 45666722 45666776 -72195851 + (TCC)n Simple_repeat Simple_repeat 2 55 0 2227 100 0 0 chr9 45666776 45667056 -72195571 - AluSq SINE Alu -33 280 1 2062 150 0 0 chr9 45667489 45667776 -72194851 - AluSx SINE Alu -25 287 1 2198 96 17 20 chr9 45667977 45668279 -72194348 + AluSc SINE Alu 1 301 -8 2087 159 11 6 chr9 45668362 45668726 -72193901 + L1PA16 LINE L1 5798 6163 -3 1291 219 32 7 chr9 45668781 45669064 -72193563 - AluJb SINE Alu -10 302 13 715 223 7 14 chr9 45669169 45669317 -72193310 + FRAM SINE Alu 23 169 -7 25 65 0 0 chr9 45669933 45669979 -72192648 + AT_rich Low_complexity Low_complexity 1 46 0 23 0 0 0 chr9 45670345 45670368 -72192259 + AT_rich Low_complexity Low_complexity 1 23 0 2251 118 0 6 chr9 45670368 45670681 -72191946 - AluSx SINE Alu -1 311 1 1077 203 113 34 chr9 45670823 45671089 -72191538 + AluJo SINE Alu 7 293 -19 2463 74 3 0 chr9 45672361 45672659 -72189968 - AluSp SINE Alu -14 299 1 586 179 17 34 chr9 45672809 45672926 -72189701 - FAM SINE Alu -70 115 1 417 216 29 0 chr9 45673976 45674078 -72188549 + MIR SINE MIR 47 151 -111 1212 56 0 7 chr9 45676329 45676473 -72186154 + AluY SINE Alu 1 143 -168 186 43 0 0 chr9 45676492 45676515 -72186112 + (A)n Simple_repeat Simple_repeat 1 23 0 734 267 101 31 chr9 45676744 45676899 -72185728 - L1ME4a LINE L1 -276 5845 5702 2234 126 0 0 chr9 45676899 45677209 -72185418 - AluSx SINE Alu -2 310 1 734 267 101 31 chr9 45677209 45677575 -72185052 - L1ME4a LINE L1 -419 5702 5258 1219 246 72 26 chr9 45678046 45678365 -72184262 + ERVL LTR ERVL 1844 2182 -3582 2344 156 38 28 chr9 45678365 45678527 -72184100 + MSTB LTR MaLR 1 160 -266 2085 117 3 27 chr9 45678527 45678825 -72183802 - AluSx SINE Alu -17 295 5 2344 156 38 28 chr9 45678825 45679084 -72183543 + MSTB LTR MaLR 160 426 0 1219 246 72 26 chr9 45679084 45679113 -72183514 + ERVL LTR ERVL 2182 2208 -3556 225 211 0 0 chr9 45679135 45679192 -72183435 + (TCTA)n Simple_repeat Simple_repeat 2 58 0 336 256 47 0 chr9 45679265 45679351 -72183276 - MIR SINE MIR 0 262 173 1492 201 12 42 chr9 45680008 45680297 -72182330 + L1MB5 LINE L1 5852 6132 -42 2158 123 0 0 chr9 45680297 45680627 -72182000 + AluSx SINE Alu 1 330 0 1492 201 12 42 chr9 45680627 45680669 -72181958 + L1MB5 LINE L1 6132 6174 0 2242 75 45 0 chr9 45680711 45681003 -72181624 - AluSp SINE Alu -8 305 1 23 0 0 0 chr9 45681011 45681034 -72181593 + AT_rich Low_complexity Low_complexity 1 23 0 656 304 29 8 chr9 45681035 45681278 -72181349 - MIR SINE MIR -7 255 8 278 293 102 6 chr9 45681411 45681568 -72181059 - MIR SINE MIR -62 146 23 460 90 70 50 chr9 45681744 45681844 -72180783 + MER4C LTR ERV1 1 102 -363 929 198 76 123 chr9 45681936 45682380 -72180247 + LTR34 LTR ERV1 136 664 -35 525 13 13 26 chr9 45682507 45682583 -72180044 + (TTAGGG)n Simple_repeat Simple_repeat 2 76 0 362 106 0 15 chr9 45682700 45682766 -72179861 + (CCTAA)n Simple_repeat Simple_repeat 4 68 0 269 306 215 0 chr9 45683119 45683263 -72179364 - MER102a DNA MER1_type 0 330 156 894 135 0 0 chr9 45683269 45683402 -72179225 - AluSg/x SINE Alu -8 302 170 341 70 0 0 chr9 45683402 45683445 -72179182 - AluSp/q SINE Alu -100 203 161 1915 138 7 10 chr9 45684251 45684556 -72178071 - AluSx SINE Alu -8 304 1 2288 101 0 23 chr9 45684568 45684876 -72177751 - AluSx SINE Alu -11 301 1 2281 94 0 7 chr9 45684883 45685181 -72177446 - AluSx SINE Alu -16 296 1 1863 126 29 7 chr9 45685993 45686270 -72176357 + AluJo SINE Alu 1 283 -29 201 147 0 0 chr9 45686275 45686309 -72176318 + (CACG)n Simple_repeat Simple_repeat 2 35 0 200 159 0 23 chr9 45686440 45686484 -72176143 + CT-rich Low_complexity Low_complexity 1 43 0 303 231 231 0 chr9 45686556 45686673 -72175954 + MIR SINE MIR 32 175 -87 1633 184 0 21 chr9 45687135 45687423 -72175204 - AluJo SINE Alu -20 292 11 299 275 17 33 chr9 45687465 45687585 -72175042 + L2 LINE L2 2856 2973 -341 181 297 226 19 chr9 45687623 45687778 -72174849 + L2 LINE L2 3125 3311 -2 181 347 0 0 chr9 45687805 45687854 -72174773 + L2 LINE L2 3111 3159 -113 194 149 287 35 chr9 45688274 45688361 -72174266 + L2 LINE L2 3200 3308 -5 2426 165 14 9 chr9 45688361 45688793 -72173834 + L1MB2 LINE L1 5652 6091 -80 1352 201 72 56 chr9 45688795 45689154 -72173473 - MLT1A1 LTR MaLR 0 365 1 2232 133 125 3 chr9 45689169 45689561 -72173066 - Tigger2 DNA MER2_type -6 2712 2273 395 143 16 0 chr9 45689551 45689614 -72173013 - Tigger2 DNA MER2_type -2649 69 6 * 346 149 30 0 chr9 45689614 45689681 -72172946 + L1MB2 LINE L1 6103 6171 0 31 0 0 0 chr9 45690036 45690067 -72172560 + AT_rich Low_complexity Low_complexity 1 31 0 1731 113 73 18 chr9 45690067 45690342 -72172285 - AluSq SINE Alu -23 290 1 2476 68 3 10 chr9 45690346 45690653 -72171974 - AluSx SINE Alu -6 306 2 360 59 0 0 chr9 45690653 45690704 -72171923 + (TTTA)n Simple_repeat Simple_repeat 1 51 0 1799 126 3 55 chr9 45690706 45690999 -72171628 - AluSq SINE Alu -35 278 1 343 234 43 21 chr9 45691125 45691219 -72171408 + AluY SINE Alu 203 298 -3 807 239 59 89 chr9 45691245 45691717 -72170910 - L1MC4 LINE L1 -60 7982 7525 2296 100 0 0 chr9 45693031 45693320 -72169307 - AluSg SINE Alu -21 289 1 215 235 288 15 chr9 45693840 45693972 -72168655 + MER5A DNA MER1_type 22 189 0 25 0 0 0 chr9 45694239 45694264 -72168363 + AT_rich Low_complexity Low_complexity 1 25 0 2074 144 14 14 chr9 45694691 45695045 -72167582 + L1PA16 LINE L1 5804 6157 -9 342 237 0 0 chr9 45695054 45695151 -72167476 + (TA)n Simple_repeat Simple_repeat 2 98 0 425 268 89 16 chr9 45697113 45697303 -72165324 + MIR SINE MIR 34 237 -25 186 43 0 0 chr9 45697483 45697506 -72165121 + (TG)n Simple_repeat Simple_repeat 2 24 0 1898 124 55 0 chr9 45697588 45697878 -72164749 - AluSx SINE Alu -6 306 1 2290 84 0 14 chr9 45699970 45700267 -72162360 + AluSx SINE Alu 1 293 -19 347 125 0 16 chr9 45700847 45700911 -72161716 + (TTTC)n Simple_repeat Simple_repeat 1 63 0 190 226 94 0 chr9 45701386 45701439 -72161188 + MIR SINE MIR 95 152 -56 1863 187 66 83 chr9 45701479 45701775 -72160852 - MLT2B1 LTR ERVL 0 520 220 306 0 0 0 chr9 45701775 45701809 -72160818 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 2419 69 0 0 chr9 45701813 45702101 -72160526 - AluY SINE Alu -23 288 1 1863 187 66 83 chr9 45702101 45702328 -72160299 - MLT2B1 LTR ERVL -303 217 1 1001 155 173 126 chr9 45703863 45704141 -72158486 + AluJo SINE Alu 1 291 -11 1092 258 93 43 chr9 45704485 45704613 -72158014 - L1MC4 LINE L1 0 8042 7922 189 107 0 0 chr9 45704613 45704641 -72157986 + (CA)n Simple_repeat Simple_repeat 2 29 0 1092 258 93 43 chr9 45704641 45705051 -72157576 - L1MC4 LINE L1 -120 7922 7477 2214 100 7 3 chr9 45705381 45705670 -72156957 + AluSq SINE Alu 1 290 -23 506 129 0 0 chr9 45705725 45705795 -72156832 + AluSp/q SINE Alu 222 291 -22 1378 162 117 11 chr9 45706591 45706856 -72155771 + AluJo SINE Alu 7 299 -13 865 224 35 57 chr9 45706858 45707175 -72155452 + L1MC5 LINE L1 7608 7917 -44 198 150 0 0 chr9 45707699 45707739 -72154888 + (TTA)n Simple_repeat Simple_repeat 3 42 0 198 314 0 0 chr9 45707917 45707968 -72154659 - MIR3 SINE MIR -41 167 117 202 303 82 41 chr9 45708312 45708434 -72154193 + L2 LINE L2 3133 3259 -13 1835 168 0 0 chr9 45708899 45709196 -72153431 - AluJb SINE Alu -15 297 1 897 160 10 87 chr9 45709872 45709934 -72152693 - L1MB8 LINE L1 -6 6172 6107 2106 127 7 3 chr9 45709934 45710241 -72152386 + AluJb SINE Alu 1 308 -4 897 160 10 87 chr9 45710241 45710384 -72152243 - L1MB8 LINE L1 -71 6107 5983 720 297 25 21 chr9 45711599 45711835 -72150792 + MIR SINE MIR 5 241 -21 2067 165 24 15 chr9 45711953 45712293 -72150334 - MER2 DNA MER2_type 0 344 2 359 148 0 0 chr9 45712370 45712424 -72150203 - Alu SINE Alu -247 54 1 180 0 0 0 chr9 45715002 45715022 -72147605 + (A)n Simple_repeat Simple_repeat 1 20 0 22 0 0 0 chr9 45716121 45716143 -72146484 + AT_rich Low_complexity Low_complexity 1 22 0 2267 97 0 3 chr9 45716146 45716435 -72146192 - AluSx SINE Alu -24 288 1 2207 146 3 26 chr9 45717951 45718004 -72144623 - L1MB3 LINE L1 0 6183 6130 1682 184 3 7 chr9 45718004 45718326 -72144301 - AluJb SINE Alu 0 312 1 2207 146 3 26 chr9 45718326 45718650 -72143977 - L1MB3 LINE L1 -53 6130 5815 2051 115 35 0 chr9 45719489 45719776 -72142851 - AluSg SINE Alu -13 297 1 325 158 40 0 chr9 45720360 45720436 -72142191 + GA-rich Low_complexity Low_complexity 3 81 0 211 239 22 0 chr9 45720560 45720606 -72142021 - MIR SINE MIR -60 148 102 32 0 0 0 chr9 45721094 45721126 -72141501 + AT_rich Low_complexity Low_complexity 1 32 0 13229 114 32 8 chr9 45722887 45723057 -72139570 - Tigger1 DNA MER2_type 0 2418 2254 1690 141 6 98 chr9 45723057 45723383 -72139244 + AluJo SINE Alu 1 296 -16 13229 114 32 8 chr9 45723383 45725185 -72137442 - Tigger1 DNA MER2_type -164 2254 398 1163 140 0 0 chr9 45725215 45725393 -72137234 - AluJo/FRAM SINE Alu -3 309 132 304 188 12 8 chr9 45725393 45725455 -72137172 + Alu SINE Alu 1 47 -253 3622 126 21 18 chr9 45725555 45726118 -72136509 - L1MB3 LINE L1 -1 6182 5618 2374 89 3 3 chr9 45726121 45726423 -72136204 - AluSx SINE Alu -10 302 1 669 245 33 5 chr9 45726485 45726669 -72135958 - L1MC5 LINE L1 -64 7897 7709 2006 116 14 14 chr9 45726790 45727111 -72135516 - AluSp SINE Alu 0 313 1 262 182 81 30 chr9 45727132 45727231 -72135396 - L1MC5 LINE L1 -37 7924 7821 351 153 0 17 chr9 45727715 45727774 -72134853 - MLT1J LTR MaLR -8 541 484 1560 247 111 13 chr9 45727817 45728278 -72134349 + HsTC2 DNA Tc2 4 509 -1389 343 213 53 43 chr9 45728278 45728372 -72134255 + HsTC2 DNA Tc2 1287 1557 -341 * 960 254 21 13 chr9 45728371 45728607 -72134020 - MLT1J LTR MaLR -22 489 252 2406 105 19 43 chr9 45728759 45728907 -72133720 - THE1B LTR MaLR 0 364 214 14014 43 1 1 chr9 45728907 45731289 -72131338 - L1PA5 LINE L1 -2 6152 3771 2406 105 19 43 chr9 45731289 45731513 -72131114 - THE1B LTR MaLR -150 214 1 364 250 48 0 chr9 45731513 45731597 -72131030 - MLT1J LTR MaLR -423 88 1 532 274 73 12 chr9 45731600 45731940 -72130687 - L1M4 LINE L1 -2760 3386 3026 3536 207 87 22 chr9 45731969 45732742 -72129885 + MER21B LTR ERV1 40 862 -1 417 289 96 36 chr9 45732754 45733055 -72129572 - L1M4 LINE L1 -3148 2998 2680 23 54 0 0 chr9 45733089 45733126 -72129501 + AT_rich Low_complexity Low_complexity 1 37 0 276 213 127 13 chr9 45733225 45733375 -72129252 - L1M4 LINE L1 -3751 2395 2229 1558 195 19 7 chr9 45733380 45733688 -72128939 - AluJo SINE Alu 0 312 1 11222 124 23 5 chr9 45734125 45735949 -72126678 + L1MEc LINE L1 1888 4849 -1366 1626 236 104 95 chr9 45736372 45737190 -72125437 + HAL1 LINE L1 818 1627 -880 2316 100 0 10 chr9 45737190 45737501 -72125126 + AluSx SINE Alu 5 312 0 1626 236 104 95 chr9 45737501 45737513 -72125114 + HAL1 LINE L1 1627 1637 -870 2188 127 0 13 chr9 45737513 45737829 -72124798 + AluSx SINE Alu 1 312 0 1626 236 104 95 chr9 45737829 45738347 -72124280 + HAL1 LINE L1 1637 2180 -327 475 307 63 29 chr9 45738353 45738558 -72124069 + MLT1J LTR MaLR 3 214 -297 841 309 50 13 chr9 45738663 45738980 -72123647 + MLT1I LTR MaLR 81 409 0 380 138 270 81 chr9 45739050 45739224 -72123403 + HAL1 LINE L1 1672 1878 -629 235 268 89 24 chr9 45739256 45739424 -72123203 - HAL1 LINE L1 -340 2167 1989 362 286 45 23 chr9 45739431 45739564 -72123063 + MLT1J LTR MaLR 374 509 -2 522 224 29 107 chr9 45739627 45739899 -72122728 + HAL1 LINE L1 2257 2507 0 2378 125 32 46 chr9 45740162 45740531 -72122096 + THE1B LTR MaLR 1 364 0 455 298 113 57 chr9 45740714 45740962 -72121665 - L2 LINE L2 -11 3261 3000 2234 98 0 3 chr9 45741034 45741374 -72121253 + AluSx SINE Alu 1 339 0 461 50 61 20 chr9 45741485 45741584 -72121043 + GA-rich Low_complexity Low_complexity 4 106 0 3542 59 5 2 chr9 45741931 45742397 -72120230 + L1PA7 LINE L1 5711 6177 0 183 270 0 0 chr9 45742742 45742779 -72119848 - L2 LINE L2 -77 3195 3159 1465 284 77 40 chr9 45743072 45743377 -72119250 + MLT1G1 LTR MaLR 1 293 -302 2171 123 13 0 chr9 45743377 45743685 -72118942 + AluSx SINE Alu 1 312 0 1465 284 77 40 chr9 45743685 45743953 -72118674 + MLT1G1 LTR MaLR 293 595 0 1342 208 85 69 chr9 45744214 45744302 -72118325 + MSTD LTR MaLR 1 86 -310 2108 121 3 0 chr9 45744302 45744612 -72118015 + AluSx SINE Alu 1 311 0 1342 208 85 69 chr9 45744612 45744912 -72117715 + MSTD LTR MaLR 86 396 0 337 281 66 51 chr9 45745335 45745531 -72117096 - LTR16C LTR ERVL -9 482 284 445 286 143 0 chr9 45745563 45745731 -72116896 - MIR SINE MIR -8 254 63 2461 87 0 3 chr9 45746589 45746898 -72115729 + AluSq SINE Alu 1 308 -5 358 338 58 42 chr9 45747014 45747414 -72115213 + MLT1K LTR MaLR 1 406 -182 1354 154 5 0 chr9 45747634 45747842 -72114785 - AluSg/x SINE Alu -14 296 88 772 165 8 16 chr9 45747942 45748069 -72114558 - FLAM_C SINE Alu -6 137 12 831 206 26 0 chr9 45748069 45748224 -72114403 - Tigger1 DNA MER2_type -2005 413 255 930 134 7 0 chr9 45748256 45748398 -72114229 - Tigger1 DNA MER2_type -2246 172 30 899 134 154 40 chr9 45748466 45748667 -72113960 + L1MA5A LINE L1 6071 6294 -3 5118 172 68 17 chr9 45749522 45749709 -72112918 - L1MD2 LINE L1 -3 6356 6180 351 44 0 0 chr9 45749709 45749754 -72112873 + (TG)n Simple_repeat Simple_repeat 2 46 0 5118 172 68 17 chr9 45749754 45749852 -72112775 - L1MD2 LINE L1 -179 6180 6088 859 143 0 0 chr9 45749852 45749985 -72112642 - FLAM_C SINE Alu 0 133 1 5118 172 68 17 chr9 45749985 45750810 -72111817 - L1MD2 LINE L1 -271 6088 5188 2148 146 0 0 chr9 45750821 45751130 -72111497 - AluSx SINE Alu -3 309 1 2080 140 18 0 chr9 45751137 45751472 -72111155 - L1PA16 LINE L1 0 6166 5826 2771 115 31 10 chr9 45751473 45751890 -72110737 - MER41B-int LTR ERV1 -255 5691 5266 1681 146 4 0 chr9 45751890 45752143 -72110484 - MER41B-int LTR ERV1 -4501 3036 2783 * 2914 106 25 13 chr9 45752141 45752808 -72109819 - MER41B-int LTR ERV1 -3929 2017 1188 5322 120 40 5 chr9 45752810 45753585 -72109042 - MER41B-int LTR ERV1 -5144 802 1 4383 116 18 8 chr9 45753585 45754214 -72108413 - MER41B LTR ERV1 0 635 1 1637 196 65 56 chr9 45755194 45755639 -72106988 + MLT1C LTR MaLR 11 459 -8 392 330 16 49 chr9 45755803 45755988 -72106639 - MIR3 SINE MIR -26 182 4 314 313 148 0 chr9 45756130 45756258 -72106369 - MLT1I LTR MaLR -217 192 46 737 219 15 0 chr9 45756438 45756575 -72106052 - FAM SINE Alu -46 139 1 1923 145 45 0 chr9 45756589 45756920 -72105707 - L1MB2 LINE L1 -8 6163 5818 1851 147 17 7 chr9 45756934 45757227 -72105400 - AluJb SINE Alu -16 296 1 26 30 0 0 chr9 45758115 45758148 -72104479 + AT_rich Low_complexity Low_complexity 1 33 0 623 173 123 37 chr9 45758591 45758753 -72103874 + MER104 DNA MER2_type 5 180 0 1358 158 117 75 chr9 45758772 45758957 -72103670 - THE1C LTR MaLR 0 375 199 315 0 0 0 chr9 45758957 45758992 -72103635 + (GA)n Simple_repeat Simple_repeat 2 36 0 1358 158 117 75 chr9 45758992 45759166 -72103461 - THE1C LTR MaLR -176 199 1 8840 179 56 3 chr9 45759180 45760734 -72101893 - MSTA-int LTR MaLR -14 1637 1 2159 124 119 33 chr9 45760734 45761128 -72101499 - MSTA LTR MaLR 0 428 1 294 29 0 0 chr9 45761403 45761438 -72101189 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 979 198 0 80 chr9 45761445 45761682 -72100945 - AluJo SINE Alu -46 266 49 1076 197 47 8 chr9 45762075 45762309 -72100318 - L1MB8 LINE L1 -1 6177 5935 242 331 64 53 chr9 45762825 45762903 -72099724 + MIR SINE MIR 20 96 -166 1801 137 3 25 chr9 45762903 45763188 -72099439 + AluJb SINE Alu 17 295 -17 242 331 64 53 chr9 45763188 45763339 -72099288 + MIR SINE MIR 96 251 -11 192 40 0 0 chr9 45763899 45763924 -72098703 + (CA)n Simple_repeat Simple_repeat 2 26 0 234 205 8 172 chr9 45764049 45764171 -72098456 - MIR3 SINE MIR -19 189 88 629 243 204 35 chr9 45764205 45764543 -72098084 - L2 LINE L2 0 3313 2919 2194 124 138 5 chr9 45765163 45765541 -72097086 - MSTA LTR MaLR 0 428 1 236 29 0 29 chr9 45766152 45766186 -72096441 + (CA)n Simple_repeat Simple_repeat 2 34 0 360 64 0 0 chr9 45766690 45766702 -72095925 + (TG)n Simple_repeat Simple_repeat 1 59 0 360 64 0 0 chr9 45766702 45766749 -72095878 + (TG)n Simple_repeat Simple_repeat 2 48 0 225 132 0 0 chr9 45767017 45767055 -72095572 + (TTTC)n Simple_repeat Simple_repeat 3 40 0 194 224 165 0 chr9 45767380 45767465 -72095162 - MIR SINE MIR -61 147 49 228 263 75 38 chr9 45767701 45767834 -72094793 - MER5A DNA MER1_type -45 144 7 1694 107 0 103 chr9 45768065 45768356 -72094271 + AluSg SINE Alu 37 297 -13 1827 144 6 30 chr9 45768623 45768956 -72093671 - L1MB8 LINE L1 0 6178 5854 335 125 16 0 chr9 45768956 45769018 -72093609 - L1MA3 LINE L1 0 6305 6241 1419 183 47 17 chr9 45769018 45769319 -72093308 - L1MB8 LINE L1 -303 5875 5566 22 0 0 0 chr9 45769326 45769348 -72093279 + AT_rich Low_complexity Low_complexity 1 22 0 645 197 61 35 chr9 45769788 45769986 -72092641 - L1ME3A LINE L1 -12 6158 5956 2378 46 0 7 chr9 45770251 45770555 -72092072 + AluSc SINE Alu 1 302 0 183 42 0 0 chr9 45771021 45771045 -72091582 + (T)n Simple_repeat Simple_repeat 1 24 0 441 230 28 28 chr9 45772062 45772240 -72090387 + (CCG)n Simple_repeat Simple_repeat 2 179 0 298 231 111 19 chr9 45772726 45772834 -72089793 + L2 LINE L2 3167 3284 -29 885 136 0 27 chr9 45773389 45773536 -72089091 - FLAM_C SINE Alu 0 143 1 204 40 0 0 chr9 45774292 45774317 -72088310 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 244 215 46 31 chr9 45774936 45775001 -72087626 - L1MC5 LINE L1 -182 7779 7714 614 218 61 57 chr9 45775056 45775285 -72087342 - L1MC5 LINE L1 -31 7930 7701 1753 155 102 29 chr9 45775393 45775774 -72086853 - L1MB8 LINE L1 -16 6162 5754 180 150 25 0 chr9 45777441 45777481 -72085146 + MIR SINE MIR 112 152 -56 11005 72 81 5 chr9 45779314 45780801 -72081826 + L1P LINE L1 13 1611 -4535 1783 149 14 24 chr9 45782369 45782664 -72079963 - AluJb SINE Alu -9 303 12 2324 160 34 36 chr9 45782682 45783157 -72079470 - L1MB8 LINE L1 0 6178 5705 2270 107 0 26 chr9 45783157 45783465 -72079162 + AluSq SINE Alu 1 300 -13 1546 183 63 21 chr9 45783466 45783800 -72078827 - MER31B LTR ERV1 -34 432 85 534 200 9 19 chr9 45783820 45783925 -72078702 + AluJb SINE Alu 2 105 -207 1673 220 28 9 chr9 45784082 45784510 -72078117 - L1MB8 LINE L1 -905 5241 4806 860 307 95 22 chr9 45784522 45784985 -72077642 - HAL1 LINE L1 -584 1923 1427 624 213 256 0 chr9 45785000 45785211 -72077416 - LTR37B LTR ERV1 -4 464 200 691 263 69 55 chr9 45785344 45785475 -72077152 - HAL1 LINE L1 -1087 1420 1292 279 0 0 0 chr9 45785475 45785506 -72077121 + (ATG)n Simple_repeat Simple_repeat 2 32 0 691 263 69 55 chr9 45785506 45785517 -72077110 - HAL1 LINE L1 -1215 1292 1283 1643 193 3 0 chr9 45785517 45785802 -72076825 - AluSx SINE Alu -26 286 1 691 263 69 55 chr9 45785802 45786149 -72076478 - HAL1 LINE L1 -1224 1283 923 212 167 21 21 chr9 45787867 45787915 -72074712 + MIR SINE MIR 86 133 -75 392 326 11 17 chr9 45788077 45788252 -72074375 + MER5B DNA MER1_type 1 174 -4 215 231 19 0 chr9 45790754 45790806 -72071821 - MIR3 SINE MIR -41 167 115 232 163 22 120 chr9 45792729 45792821 -72069806 + L1MC5 LINE L1 7848 7930 -31 249 212 30 30 chr9 45792876 45792942 -72069685 + L1MC5 LINE L1 7714 7779 -182 204 40 0 0 chr9 45793561 45793586 -72069041 + (TTTTC)n Simple_repeat Simple_repeat 2 26 0 536 234 0 8 chr9 45794342 45794470 -72068157 + FLAM_C SINE Alu 1 127 -6 355 241 44 63 chr9 45795164 45795322 -72067305 - MIR3 SINE MIR -24 184 30 1984 101 61 10 chr9 45795937 45796233 -72066394 - AluSx SINE Alu -1 311 1 820 205 0 0 chr9 45797020 45797171 -72065456 + AluJb SINE Alu 148 298 -14 418 240 41 16 chr9 45797731 45797852 -72064775 - L1MC5 LINE L1 -52 7909 7786 2120 104 44 3 chr9 45797871 45798169 -72064458 - AluSg SINE Alu 0 310 1 2009 140 30 0 chr9 45798177 45798477 -72064150 - AluSx SINE Alu -1 311 3 638 224 7 14 chr9 45800504 45800651 -72061976 - MER46C DNA MER2_type 0 338 193 360 169 0 0 chr9 45800653 45800712 -72061915 - MER46C DNA MER2_type -279 59 1 796 94 8 0 chr9 45800741 45800858 -72061769 - L1MB2 LINE L1 -4 6167 6050 235 250 13 26 chr9 45801154 45801230 -72061397 + MLT1I LTR MaLR 333 407 -2 219 284 0 0 chr9 45801731 45801819 -72060808 + (TA)n Simple_repeat Simple_repeat 1 88 0 351 254 127 8 chr9 45802793 45802911 -72059716 - MIR SINE MIR 0 262 131 222 200 0 20 chr9 45803612 45803662 -72058965 + CT-rich Low_complexity Low_complexity 2 50 0 621 246 36 31 chr9 45804306 45804530 -72058097 - L1MC5 LINE L1 -30 7931 7707 920 215 142 64 chr9 45804531 45804689 -72057938 - L1MC5 LINE L1 -307 7654 7510 2187 106 0 3 chr9 45804689 45804992 -72057635 - AluSx SINE Alu -10 302 1 920 215 142 64 chr9 45804992 45805257 -72057370 - L1MC5 LINE L1 -451 7510 7198 343 286 39 0 chr9 45805710 45805787 -72056840 - L2 LINE L2 -1 3271 3192 696 256 165 46 chr9 45806003 45806331 -72056296 - MLT1G1 LTR MaLR -3 592 226 388 115 0 64 chr9 45806366 45806444 -72056183 - L1MB4 LINE L1 0 6180 6108 198 0 0 0 chr9 45807088 45807110 -72055517 + (TG)n Simple_repeat Simple_repeat 1 22 0 180 0 0 0 chr9 45807690 45807710 -72054917 + (A)n Simple_repeat Simple_repeat 1 20 0 1714 135 0 0 chr9 45810356 45810615 -72052012 - AluSx SINE Alu -9 303 45 1966 104 0 11 chr9 45810994 45811274 -72051353 + AluSg SINE Alu 21 297 -13 7660 28 8 4 chr9 45811342 45812350 -72050277 - L1PA4 LINE L1 0 6155 5149 43957 43 4 7 chr9 45812450 45818592 -72044035 - L1PA5 LINE L1 -28 6126 1 803 201 56 0 chr9 45820772 45820951 -72041676 + MER5A DNA MER1_type 1 189 0 332 259 25 0 chr9 45821335 45821416 -72041211 - MIR SINE MIR -107 155 73 286 324 43 51 chr9 45822060 45822242 -72040385 + MIR SINE MIR 8 199 -9 332 288 0 0 chr9 45822426 45822499 -72040128 - L2 LINE L2 0 3272 3200 348 313 265 0 chr9 45823505 45823652 -72038975 + MER5A DNA MER1_type 4 189 0 307 262 58 0 chr9 45823773 45823876 -72038751 + MER97a DNA MER1_type? 15 123 -771 912 193 84 38 chr9 45824574 45824813 -72037814 - MLT1A1 LTR MaLR 0 365 116 1925 129 7 3 chr9 45825050 45825345 -72037282 - AluJb SINE Alu -16 296 1 237 249 67 81 chr9 45825345 45825554 -72037073 - L1M4 LINE L1 -3003 3143 2938 413 250 121 0 chr9 45825555 45825671 -72036956 - MER69A DNA AcHobo -47 130 1 200 354 76 28 chr9 45825856 45826000 -72036627 - MIR SINE MIR -110 152 2 2009 174 100 91 chr9 45826151 45826692 -72035935 - MLT1F1 LTR MaLR -2 565 20 1496 207 87 69 chr9 45826713 45826763 -72035864 - MSTB2 LTR MaLR 0 457 409 1806 133 43 0 chr9 45826763 45827042 -72035585 - AluSx SINE Alu -21 291 1 1496 207 87 69 chr9 45827042 45827426 -72035201 - MSTB2 LTR MaLR -48 409 15 1158 209 56 82 chr9 45827428 45827672 -72034955 + MER39 LTR ERV1 14 263 -444 2177 75 44 0 chr9 45827672 45827966 -72034661 - AluY SINE Alu -4 307 1 1158 209 56 82 chr9 45827966 45828212 -72034415 + MER39 LTR ERV1 263 707 0 1385 244 98 34 chr9 45828417 45829157 -72033470 - L2 LINE L2 0 3313 2535 266 303 97 39 chr9 45829251 45829406 -72033221 - L2 LINE L2 -2 3270 3107 2495 53 0 0 chr9 45829596 45829897 -72032730 + AluY SINE Alu 3 303 -8 2276 82 59 23 chr9 45830067 45830457 -72032170 - LTR7 LTR ERV1 -2 448 1 2472 93 48 13 chr9 45830457 45830834 -72031793 - HERVH LTR ERV1 0 7713 7324 1358 139 23 0 chr9 45830834 45831049 -72031578 - HERVH LTR ERV1 -1894 5819 5600 4489 139 0 1 chr9 45831050 45831713 -72030914 - HERVH LTR ERV1 -2564 5149 4488 6476 75 2 2 chr9 45831715 45832569 -72030058 - HERVH LTR ERV1 -3720 3993 3140 1170 138 20 15 chr9 45832555 45832758 -72029869 - HERVH LTR ERV1 -4721 2992 2789 * 38 0 0 0 chr9 45835829 45835867 -72026760 + AT_rich Low_complexity Low_complexity 1 38 0 421 248 15 88 chr9 45836943 45837080 -72025547 - MIR SINE MIR -44 218 92 3053 125 21 62 chr9 45837565 45838094 -72024533 - MER1A DNA MER1_type 0 529 23 400 295 148 0 chr9 45838847 45838996 -72023631 + MIR SINE MIR 84 254 -8 1107 169 44 44 chr9 45839207 45839412 -72023215 - LTR37B LTR ERV1 0 468 261 1976 129 13 0 chr9 45839412 45839715 -72022912 + AluSx SINE Alu 1 307 -5 1107 169 44 44 chr9 45839715 45839781 -72022846 - LTR37B LTR ERV1 -206 262 197 360 97 0 32 chr9 45839858 45839920 -72022707 + Alu SINE Alu 242 301 -1 1559 189 0 10 chr9 45839952 45840243 -72022384 + AluJb SINE Alu 1 288 -24 2489 186 51 14 chr9 45840253 45840743 -72021884 + L1MB2 LINE L1 5654 6161 -10 268 83 0 21 chr9 45840760 45840808 -72021819 + L1MB3 LINE L1 6130 6176 -7 376 220 182 51 chr9 45840845 45841059 -72021568 - L2 LINE L2 -232 3081 2840 237 83 0 0 chr9 45841086 45841122 -72021505 + (CA)n Simple_repeat Simple_repeat 2 37 0 353 274 116 14 chr9 45841306 45841452 -72021175 - MIR3 SINE MIR -30 178 18 375 257 37 28 chr9 45841910 45842019 -72020608 + MIR SINE MIR 35 144 -118 1070 254 189 2 chr9 45842298 45842715 -72019912 + MLT2F LTR ERVL 3 497 -166 1603 154 4 7 chr9 45842958 45843231 -72019396 + AluJo SINE Alu 1 272 -40 593 157 119 15 chr9 45843251 45843385 -72019242 - MER63 DNA MER1_type -778 152 5 14012 59 67 2 chr9 45843817 45845626 -72017001 + L1P LINE L1 13 1939 -4207 243 88 0 0 chr9 45846124 45846158 -72016469 + (CA)n Simple_repeat Simple_repeat 1 34 0 21 0 0 0 chr9 45846609 45846630 -72015997 + AT_rich Low_complexity Low_complexity 1 21 0 4697 152 50 13 chr9 45847177 45847741 -72014886 + L1PB4 LINE L1 5190 5732 -424 216 0 0 0 chr9 45847741 45847765 -72014862 + (TA)n Simple_repeat Simple_repeat 1 24 0 * 261 0 0 0 chr9 45847764 45847793 -72014834 + (CA)n Simple_repeat Simple_repeat 2 30 0 4697 152 50 13 chr9 45847765 45848157 -72014470 + L1PB4 LINE L1 5732 6151 -5 472 130 162 19 chr9 45848366 45848520 -72014107 - Charlie5 DNA MER1_type -27 2585 2410 6188 176 26 19 chr9 45848704 45851093 -72011534 - L1PA16 LINE L1 -6 6160 3754 742 142 8 8 chr9 45851092 45851226 -72011401 + L1P LINE L1 1275 1408 -4738 * 978 201 73 8 chr9 45851359 45851593 -72011034 - MLT1A1 LTR MaLR -104 261 13 1020 168 94 15 chr9 45851734 45851937 -72010690 - MER20 DNA MER1_type 0 219 1 321 256 33 0 chr9 45852004 45852094 -72010533 + MIR SINE MIR 80 172 -90 432 234 85 21 chr9 45853532 45853673 -72008954 + MER117 DNA MER1_type 1 150 -47 234 0 0 0 chr9 45854397 45854423 -72008204 + (T)n Simple_repeat Simple_repeat 1 26 0 825 235 169 19 chr9 45854854 45854962 -72007665 + LTR16A1 LTR ERVL 22 112 -345 1476 213 65 52 chr9 45854962 45855423 -72007204 + MLT1C LTR MaLR 1 467 0 825 235 169 19 chr9 45855423 45855693 -72006934 + LTR16A1 LTR ERVL 112 457 0 873 292 29 25 chr9 45856772 45857049 -72005578 + MER20B DNA MER1_type 1 278 -505 919 178 26 53 chr9 45857153 45857417 -72005210 + MER20B DNA MER1_type 522 778 -5 271 236 15 33 chr9 45857422 45857513 -72005114 - MIR3 SINE MIR -50 158 68 811 254 117 21 chr9 45857718 45858009 -72004618 - MER46C DNA MER2_type -2 336 18 196 303 139 0 chr9 45858511 45858633 -72003994 - MIR SINE MIR -7 255 117 305 265 43 26 chr9 45859704 45859821 -72002806 + MER20B DNA MER1_type 67 185 -598 657 261 187 26 chr9 45859875 45860265 -72002362 + L2 LINE L2 2843 3295 -18 377 258 112 22 chr9 45863568 45863734 -71998893 - MER20B DNA MER1_type -17 202 21 232 339 119 0 chr9 45866730 45866848 -71995779 + L2 LINE L2 3138 3269 -3 2038 154 13 0 chr9 45867336 45867641 -71994986 - AluJb SINE Alu -3 309 1 292 295 32 0 chr9 45869353 45869448 -71993179 - MER91A DNA MER1_type -96 100 3 844 221 55 0 chr9 45869478 45869695 -71992932 + MIR SINE MIR 34 262 0 273 324 54 49 chr9 45869812 45869997 -71992630 + MIR3 SINE MIR 23 208 0 658 47 24 0 chr9 45872089 45872174 -71990453 + L1PA4 LINE L1 6066 6152 -3 616 298 79 9 chr9 45872755 45872983 -71989644 + MIR SINE MIR 12 255 -7 315 257 7 83 chr9 45873708 45873751 -71988876 + MER94 DNA DNA 2 47 -87 895 227 56 0 chr9 45873751 45873949 -71988678 - MER3 DNA MER1_type 0 209 1 315 257 7 83 chr9 45873949 45874049 -71988578 + MER94 DNA DNA 47 134 0 479 212 331 7 chr9 45874207 45874358 -71988269 + MER3 DNA MER1_type 2 201 -8 39794 37 27 2 chr9 45875587 45880393 -71982234 + L1P LINE L1 1 4929 -1217 347 213 62 0 chr9 45881298 45881378 -71981249 + MER103 DNA DNA 3 87 -79 1034 210 0 0 chr9 45881542 45881728 -71980899 - MER5A DNA MER1_type 0 189 4 540 144 51 42 chr9 45883187 45883250 -71979377 - MER5A DNA MER1_type -68 121 55 1590 182 193 59 chr9 45883250 45883811 -71978816 - MER92B LTR ERV1 0 636 1 540 144 51 42 chr9 45883811 45883865 -71978762 - MER5A DNA MER1_type -134 55 3 182 33 67 0 chr9 45883955 45883985 -71978642 + T-rich Low_complexity Low_complexity 5 36 0 1915 137 11 4 chr9 45883985 45884263 -71978364 - AluSx SINE Alu -32 280 1 2056 144 7 0 chr9 45884274 45884579 -71978048 - AluSq SINE Alu -4 309 3 213 296 128 16 chr9 45886045 45886120 -71976507 + MER5A DNA MER1_type 51 116 -73 180 111 0 0 chr9 45886120 45886147 -71976480 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 213 296 128 16 chr9 45886147 45886196 -71976431 + MER5A DNA MER1_type 116 189 0 20928 27 2 1 chr9 45886778 45890036 -71972591 - L1PA2 LINE L1 0 6155 2921 237 211 57 46 chr9 45890182 45890316 -71972311 + L1MC4 LINE L1 1939 6965 -1357 189 147 0 0 chr9 45890334 45890368 -71972259 + (GGGAGA)n Simple_repeat Simple_repeat 3 36 0 416 309 114 65 chr9 45890397 45890969 -71971658 + L2 LINE L2 2710 3310 -3 509 286 59 23 chr9 45891147 45891367 -71971260 + MIR SINE MIR 11 238 -24 199 252 29 19 chr9 45891388 45891491 -71971136 - L2 LINE L2 -554 2760 2657 515 226 121 11 chr9 45891878 45892068 -71970559 - L1ME LINE L1 -373 5748 5538 268 246 0 33 chr9 45893021 45893082 -71969545 + MER1B DNA MER1_type 1 59 -278 * 666 128 56 56 chr9 45893054 45893179 -71969448 + MER1B DNA MER1_type 149 273 -66 452 128 233 0 chr9 45894024 45894110 -71968517 + MER2 DNA MER2_type 2 107 -238 3679 132 23 16 chr9 45894211 45895157 -71967470 - HERVH LTR ERV1 -6576 1137 1 2212 88 42 15 chr9 45895159 45895519 -71967108 - LTR7 LTR ERV1 -2 448 31 1168 121 6 0 chr9 45895632 45895798 -71966829 + AluSg/x SINE Alu 128 294 -18 1271 106 0 0 chr9 45895843 45896003 -71966624 + AluSq SINE Alu 1 160 -153 535 268 122 35 chr9 45896432 45896995 -71965632 + L2 LINE L2 2658 3264 -49 618 187 22 30 chr9 45899466 45899600 -71963027 + MIR SINE MIR 2 134 -128 1319 147 29 25 chr9 45899663 45899908 -71962719 + L1MC1 LINE L1 6081 6326 -7 539 262 218 38 chr9 45900494 45900998 -71961629 + L1MC4a LINE L1 5548 6142 -1666 214 343 88 29 chr9 45901416 45901553 -71961074 - MIR3 SINE MIR -2 206 62 541 305 134 37 chr9 45901947 45902268 -71960359 + MLT1J2 LTR MaLR 66 417 -33 12827 29 6 1 chr9 45902429 45904623 -71958004 + L1PA2 LINE L1 3952 6152 -3 192 135 0 0 chr9 45904631 45904668 -71957959 + (A)n Simple_repeat Simple_repeat 1 37 0 375 291 153 42 chr9 45906037 45906298 -71956329 + L2 LINE L2 2980 3269 -3 938 136 0 0 chr9 45906476 45906608 -71956019 - FLAM_C SINE Alu -11 132 1 2360 97 0 0 chr9 45907446 45907744 -71954883 - AluSq SINE Alu -15 298 1 204 125 0 0 chr9 45908341 45908373 -71954254 + (T)n Simple_repeat Simple_repeat 1 32 0 1321 184 113 56 chr9 45908957 45909294 -71953333 + MSTC LTR MaLR 1 356 -72 8143 32 5 0 chr9 45910287 45912009 -71950618 + L1PA3 LINE L1 4269 6152 -3 7833 43 1 2 chr9 45912018 45913143 -71949484 + L1PA5 LINE L1 5031 6154 0 2322 90 3 10 chr9 45913289 45913590 -71949037 - AluSq SINE Alu -12 301 3 260 280 113 43 chr9 45913680 45913866 -71948761 + MIR SINE MIR 46 244 -18 222 358 92 12 chr9 45914673 45914913 -71947714 + L2 LINE L2 2715 2973 -341 290 246 61 61 chr9 45915129 45915243 -71947384 + L2 LINE L2 3199 3312 -1 21 0 0 0 chr9 45915706 45915727 -71946900 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 45916007 45916028 -71946599 + AT_rich Low_complexity Low_complexity 1 21 0 221 122 176 27 chr9 45916352 45916426 -71946201 - MIR SINE MIR -1 261 177 914 220 161 85 chr9 45919516 45920020 -71942607 + MLT1F LTR MaLR 1 542 0 311 272 87 0 chr9 45920141 45920233 -71942394 + L2 LINE L2 3214 3313 0 224 245 21 41 chr9 45921899 45922008 -71940619 - MIR SINE MIR -63 145 80 190 293 120 13 chr9 45922230 45922305 -71940322 - MER5A DNA MER1_type -44 145 63 1353 184 96 0 chr9 45923044 45923154 -71939473 + AluJo SINE Alu 1 99 -213 450 0 0 0 chr9 45923154 45923204 -71939423 + (CA)n Simple_repeat Simple_repeat 2 51 0 1353 184 96 0 chr9 45923204 45923354 -71939273 + AluJo SINE Alu 99 286 -26 231 311 0 0 chr9 45923911 45923956 -71938671 + A-rich Low_complexity Low_complexity 1 45 0 237 288 38 0 chr9 45924295 45924375 -71938252 - L2 LINE L2 -2 3270 3188 1542 183 109 48 chr9 45924597 45924633 -71937994 - MER31B LTR ERV1 -9 476 444 2300 100 0 29 chr9 45924633 45924943 -71937684 + AluSx SINE Alu 1 301 -11 1542 183 109 48 chr9 45924943 45925296 -71937331 - MER31B LTR ERV1 -41 444 114 1847 155 24 3 chr9 45925296 45925592 -71937035 + AluJb SINE Alu 1 302 -10 198 0 0 0 chr9 45925602 45925624 -71937003 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 1542 183 109 48 chr9 45925624 45925705 -71936922 - MER31B LTR ERV1 -379 106 9 291 310 7 63 chr9 45926162 45926304 -71936323 - MIR3 SINE MIR -60 148 15 1815 182 14 0 chr9 45926413 45926704 -71935923 + AluJo SINE Alu 1 295 -17 388 238 135 0 chr9 45927007 45927202 -71935425 - HAL1b LINE L1 -133 2374 758 386 233 208 0 chr9 45927461 45927581 -71935046 - MER5A DNA MER1_type -29 160 16 1283 266 102 47 chr9 45927591 45928275 -71934352 - HAL1 LINE L1 -975 1532 811 329 259 70 60 chr9 45928546 45928731 -71933896 - L1MC5 LINE L1 -36 7925 7739 542 144 0 0 chr9 45928744 45928834 -71933793 - L1MB4 LINE L1 0 6180 6091 1962 148 0 40 chr9 45928836 45929160 -71933467 + AluSx SINE Alu 1 311 -1 279 289 22 0 chr9 45929164 45929254 -71933373 + L1PA16 LINE L1 6074 6165 -1 273 57 0 0 chr9 45929294 45929329 -71933298 + (TA)n Simple_repeat Simple_repeat 1 35 0 322 262 166 14 chr9 45929876 45930021 -71932606 - L1MC/D LINE L1 -2303 5505 5339 216 167 42 0 chr9 45930846 45930894 -71931733 + L2 LINE L2 3264 3313 0 251 232 54 107 chr9 45930969 45931081 -71931546 + MIR SINE MIR 24 129 -133 * 2010 250 241 25 chr9 45931064 45932086 -71930541 + L2 LINE L2 1802 3143 -170 2129 109 0 3 chr9 45932086 45932408 -71930219 + AluSq SINE Alu 1 321 0 2010 250 241 25 chr9 45932408 45932606 -71930021 + L2 LINE L2 3143 3297 -16 4803 142 21 53 chr9 45932606 45932842 -71929785 - L1MB1 LINE L1 0 6168 5926 1655 183 3 19 chr9 45932842 45933154 -71929473 - AluJo SINE Alu -5 307 1 4803 142 21 53 chr9 45933154 45933836 -71928791 - L1MB1 LINE L1 -242 5926 5280 28 79 0 0 chr9 45934056 45934119 -71928508 + AT_rich Low_complexity Low_complexity 1 63 0 38 61 0 0 chr9 45934236 45934302 -71928325 + AT_rich Low_complexity Low_complexity 1 66 0 435 140 10 22 chr9 45934334 45934966 -71927661 - L1MC3 LINE L1 0 7785 5568 312 191 79 0 chr9 45934983 45935046 -71927581 - MER94 DNA DNA -62 72 5 627 288 56 34 chr9 45935823 45936056 -71926571 - MIR SINE MIR -21 241 4 289 272 7 125 chr9 45939042 45939178 -71923449 + MIR SINE MIR 87 206 -56 876 286 24 63 chr9 45939420 45939846 -71922781 - MLT1J LTR MaLR -76 435 27 2297 236 81 27 chr9 45940130 45940724 -71921903 + MLT1E2 LTR MaLR 1 626 0 328 206 55 0 chr9 45941292 45941365 -71921262 - Charlie8 DNA MER1_type 0 2417 2341 452 314 10 31 chr9 45942152 45942346 -71920281 + MIR SINE MIR 23 212 -50 623 244 90 16 chr9 45942799 45943084 -71919543 - L2 LINE L2 0 3313 2919 307 212 86 80 chr9 45943170 45943321 -71919306 - L1MDa LINE L1 -4363 2177 2026 2353 86 0 3 chr9 45943521 45943822 -71918805 + AluSg SINE Alu 1 300 -10 1756 159 38 7 chr9 45945157 45945446 -71917181 - AluJb SINE Alu -14 298 1 1782 232 9 25 chr9 45945454 45945894 -71916733 - L1ME3 LINE L1 0 6162 5730 422 291 64 41 chr9 45946458 45946630 -71915997 - MIR SINE MIR -59 203 28 374 304 42 11 chr9 45947973 45948164 -71914463 - L1ME3 LINE L1 -2357 5451 5255 319 259 133 46 chr9 45950065 45950328 -71912299 - L1ME3 LINE L1 -3389 2757 2472 303 203 0 0 chr9 45950772 45950836 -71911791 + (CATATA)n Simple_repeat Simple_repeat 2 65 0 1782 129 53 0 chr9 45950844 45951108 -71911519 - L1PA13 LINE L1 -10 6153 5876 953 207 154 31 chr9 45951499 45951818 -71910809 - L1ME3 LINE L1 -11 6151 5794 357 279 25 94 chr9 45951825 45952092 -71910535 - L1MDa LINE L1 -898 2003 1739 841 276 26 18 chr9 45952657 45952885 -71909742 + MIR SINE MIR 19 248 -14 1402 131 42 55 chr9 45952894 45953131 -71909496 - MER46A DNA MER2_type -2 234 1 2001 125 20 7 chr9 45953655 45953950 -71908677 - AluSx SINE Alu -13 299 1 520 167 33 0 chr9 45954161 45954251 -71908376 + L1MA6 LINE L1 6199 6291 -9 2316 112 0 0 chr9 45954386 45954698 -71907929 - AluSx SINE Alu 0 312 1 23 0 0 0 chr9 45955666 45955689 -71906938 + AT_rich Low_complexity Low_complexity 1 23 0 1794 148 30 10 chr9 45956642 45956945 -71905682 + L1M3 LINE L1 5439 5747 -433 684 302 133 33 chr9 45957434 45958199 -71904428 + L2 LINE L2 2182 3077 -195 328 363 51 13 chr9 45958612 45958769 -71903858 + L2 LINE L2 3108 3270 -2 572 280 217 13 chr9 45958787 45959295 -71903332 + L2 LINE L2 2690 3312 -1 28 0 0 0 chr9 45959677 45959705 -71902922 + AT_rich Low_complexity Low_complexity 1 28 0 1852 46 5 0 chr9 45959705 45959922 -71902705 - L1PA5 LINE L1 -7 6147 5930 362 328 100 11 chr9 45960996 45961176 -71901451 + MIR SINE MIR 67 262 0 789 158 169 23 chr9 45961653 45961717 -71900910 + MER20 DNA MER1_type 16 69 -150 399 21 0 0 chr9 45961717 45961765 -71900862 + (TG)n Simple_repeat Simple_repeat 2 49 0 789 158 169 23 chr9 45961765 45961877 -71900750 + MER20 DNA MER1_type 69 218 -1 201 200 0 40 chr9 45962462 45962512 -71900115 - L2 LINE L2 -4 3268 3221 616 247 114 26 chr9 45963653 45963924 -71898703 + L1ME4a LINE L1 5808 6102 -19 270 219 59 27 chr9 45963977 45964109 -71898518 - L1ME LINE L1 -290 5831 5693 2545 83 6 0 chr9 45964358 45964682 -71897945 - L1PA10 LINE L1 -5 6163 5838 280 341 96 60 chr9 45964686 45965105 -71897522 + L2 LINE L2 2836 3269 -3 249 229 72 24 chr9 45965105 45965188 -71897439 - L1ME LINE L1 -263 5858 5772 1220 151 60 5 chr9 45965242 45965460 -71897167 + AluSc SINE Alu 79 308 -1 1709 157 71 0 chr9 45965474 45965754 -71896873 + AluJo SINE Alu 1 300 -12 255 196 0 0 chr9 45966264 45966315 -71896312 + MER116 DNA Mariner 13 63 -17 208 239 0 0 chr9 45966315 45966361 -71896266 + (TATG)n Simple_repeat Simple_repeat 2 47 0 254 232 29 29 chr9 45966513 45966582 -71896045 + MER5A DNA MER1_type 120 188 -1 1882 146 0 11 chr9 45967205 45967492 -71895135 - AluJb SINE Alu -28 284 1 8102 24 2 0 chr9 45967527 45969138 -71893489 + L1PA4 LINE L1 4537 6149 -6 48 43 0 0 chr9 45969156 45969225 -71893402 + AT_rich Low_complexity Low_complexity 1 69 0 1696 92 38 4 chr9 45969277 45969517 -71893110 - L1MA5A LINE L1 -10 6287 6040 237 219 73 10 chr9 45969898 45969994 -71892633 + MER113 DNA MER1_type? 116 217 -304 337 246 0 0 chr9 45970077 45970146 -71892481 - MIR SINE MIR -62 146 78 230 229 133 57 chr9 45971104 45971209 -71891418 + L2 LINE L2 3160 3272 0 594 233 14 20 chr9 45971797 45971943 -71890684 - MIR SINE MIR -103 159 15 393 261 42 0 chr9 45972449 45972568 -71890059 + MER117 DNA MER1_type 30 153 -44 229 237 17 0 chr9 45973859 45973918 -71888709 + L2 LINE L2 3254 3313 0 326 247 123 62 chr9 45973985 45974147 -71888480 + MIR3 SINE MIR 26 197 -11 211 135 0 27 chr9 45975152 45975189 -71887438 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 2419 145 27 69 chr9 45975207 45975684 -71886943 + LTR32 LTR ERVL 15 471 0 592 272 30 0 chr9 45976087 45976256 -71886371 + MIR SINE MIR 77 250 -12 189 263 0 0 chr9 45976526 45976564 -71886063 + L2 LINE L2 3138 3175 -97 314 309 24 8 chr9 45976592 45976718 -71885909 - MIR SINE MIR -41 221 94 678 260 104 0 chr9 45976752 45976925 -71885702 + MIR SINE MIR 59 249 -13 771 192 68 6 chr9 45977296 45977473 -71885154 - L2 LINE L2 0 3313 3126 774 277 30 0 chr9 45978808 45979010 -71883617 + L2 LINE L2 314 521 -2793 254 332 104 40 chr9 45979358 45979560 -71883067 + MLT1K LTR MaLR 16 230 -358 265 248 163 35 chr9 45979611 45979752 -71882875 + MLT1K LTR MaLR 351 509 -79 574 279 43 8 chr9 45979752 45979938 -71882689 + MLT1J2 LTR MaLR 1 195 -249 2179 138 0 3 chr9 45980014 45980325 -71882302 + AluSx SINE Alu 1 310 -2 571 271 17 44 chr9 45980367 45980548 -71882079 - L2 LINE L2 -258 3055 2880 862 282 29 46 chr9 45980598 45980945 -71881682 - L2 LINE L2 -708 2606 2266 452 234 117 0 chr9 45980980 45981108 -71881519 - MIR SINE MIR -6 256 114 2014 145 0 3 chr9 45981228 45981525 -71881102 - AluJb SINE Alu -14 298 3 189 289 53 40 chr9 45981527 45981603 -71881024 + L2 LINE L2 3186 3262 -10 389 306 76 70 chr9 45982251 45982581 -71880046 + L2 LINE L2 2938 3269 -3 346 315 34 14 chr9 45982632 45982778 -71879849 + MIR3 SINE MIR 43 191 -17 516 289 109 28 chr9 45983904 45984226 -71878401 + MER34B LTR ERV1 216 563 -2 1511 199 7 10 chr9 45984594 45984890 -71877737 + AluJo SINE Alu 9 303 -9 912 149 32 53 chr9 45984891 45985079 -71877548 + THE1C LTR MaLR 140 323 -52 317 199 309 37 chr9 45986480 45986616 -71876011 - MER5A DNA MER1_type -8 181 9 480 288 105 13 chr9 45987090 45987319 -71875308 + MIR SINE MIR 12 261 -1 1601 193 7 4 chr9 45988277 45988557 -71874070 - AluJo SINE Alu -30 282 2 311 307 20 0 chr9 45988666 45988767 -71873860 - MLT1J LTR MaLR 0 511 409 336 254 254 49 chr9 45988826 45989050 -71873577 - MLT1J LTR MaLR -222 289 20 4510 36 9 0 chr9 45989410 45990087 -71872540 - L1PA2 LINE L1 -624 5531 4851 5867 22 3 3 chr9 45990087 45990720 -71871907 + L1PA2 LINE L1 5509 6155 0 1378 169 90 4 chr9 45991229 45991507 -71871120 + L1MB3 LINE L1 5882 6183 0 789 234 99 0 chr9 45991905 45992076 -71870551 + MER5A DNA MER1_type 1 188 -1 315 210 202 50 chr9 45992532 45992651 -71869976 + MIR SINE MIR 17 153 -55 233 304 133 50 chr9 45992720 45992792 -71869835 + MIR SINE MIR 57 122 -140 2005 117 21 0 chr9 45992792 45993074 -71869553 + AluSx SINE Alu 1 288 -24 323 31 16 47 chr9 45993078 45993142 -71869485 + (TAAA)n Simple_repeat Simple_repeat 3 64 0 233 304 133 50 chr9 45993142 45993245 -71869382 + MIR SINE MIR 124 252 -10 956 186 16 61 chr9 45994418 45994561 -71868066 - L1MB7 LINE L1 -21 6163 6034 2267 103 0 6 chr9 45994561 45994873 -71867754 + AluY SINE Alu 1 310 -1 956 186 16 61 chr9 45994873 45994976 -71867651 - L1MB7 LINE L1 -150 6034 5928 324 277 30 30 chr9 45994976 45995077 -71867550 - L2 LINE L2 -24 3289 3189 602 241 7 29 chr9 45995993 45996130 -71866497 + MER94 DNA DNA 1 134 0 473 270 16 8 chr9 45998113 45998239 -71864388 + L2 LINE L2 3187 3313 0 434 261 69 84 chr9 45998621 45998797 -71863830 - MIR SINE MIR -21 241 69 2673 48 0 3 chr9 45998797 45999109 -71863518 - AluY SINE Alu 0 311 1 434 261 69 84 chr9 45999109 45999175 -71863452 - MIR SINE MIR -193 69 4 2836 107 3 0 chr9 45999441 45999804 -71862823 - THE1B LTR MaLR 0 364 1 788 256 93 5 chr9 46000090 46000305 -71862322 + MIR SINE MIR 29 262 0 2667 120 57 12 chr9 46001511 46001935 -71860692 + MER65A LTR ERV1 1 443 -2 772 225 0 29 chr9 46001937 46002110 -71860517 + MER65A-int LTR ERV1 5 172 -4699 836 214 0 0 chr9 46002110 46002273 -71860354 - FRAM SINE Alu 0 170 8 4762 191 43 58 chr9 46002279 46002353 -71860274 + MER65A-int LTR ERV1 161 235 -4636 1587 195 17 23 chr9 46002353 46002655 -71859972 + AluJo SINE Alu 1 300 -12 4762 191 43 58 chr9 46002655 46004749 -71857878 + MER65A-int LTR ERV1 235 2491 -2380 1617 161 72 103 chr9 46004850 46005606 -71857021 + MER65A-int LTR ERV1 1541 3481 -3117 517 175 96 83 chr9 46005834 46006063 -71856564 + MER65A-int LTR ERV1 3499 3730 -2868 2556 184 92 83 chr9 46006142 46007234 -71855393 + MER65A-int LTR ERV1 2469 3550 -2781 1949 153 0 3 chr9 46007234 46007528 -71855099 + AluSx SINE Alu 1 293 -19 2556 184 92 83 chr9 46007528 46007781 -71854846 + MER65A-int LTR ERV1 3550 5094 -1237 5293 212 46 16 chr9 46007944 46009173 -71853454 + MER65A-int LTR ERV1 3605 4871 0 2769 106 8 64 chr9 46009173 46009644 -71852983 + MER65A LTR ERV1 1 445 0 408 144 93 31 chr9 46010058 46010155 -71852472 - L1MB4 LINE L1 -1 6182 6079 244 238 32 0 chr9 46010315 46010378 -71852249 + MER117 DNA MER1_type 9 73 -124 200 327 53 44 chr9 46010655 46010768 -71851859 - L2 LINE L2 -5 3267 3154 487 329 75 33 chr9 46011126 46011366 -71851261 + MIR SINE MIR 10 259 -3 428 232 0 0 chr9 46011708 46011790 -71850837 + MIR SINE MIR 58 139 -123 2361 81 14 0 chr9 46012715 46013011 -71849616 + AluSx SINE Alu 1 300 -12 464 234 60 21 chr9 46013267 46013466 -71849161 + MIR SINE MIR 9 262 0 779 243 34 52 chr9 46013798 46014065 -71848562 + MIR SINE MIR 1 262 0 376 283 25 17 chr9 46014332 46014452 -71848175 - MER5A DNA MER1_type -1 188 68 242 322 59 42 chr9 46014470 46014588 -71848039 - MIR3 SINE MIR -42 166 47 210 171 0 0 chr9 46014895 46014930 -71847697 + A-rich Low_complexity Low_complexity 1 35 0 183 80 0 0 chr9 46015661 46015686 -71846941 + (T)n Simple_repeat Simple_repeat 1 25 0 494 329 13 13 chr9 46015916 46016071 -71846556 - MER5A DNA MER1_type 0 189 35 22 80 0 0 chr9 46016698 46016748 -71845879 + AT_rich Low_complexity Low_complexity 1 50 0 537 306 154 29 chr9 46017437 46017852 -71844775 + L2 LINE L2 2847 3313 0 234 0 0 0 chr9 46018638 46018664 -71843963 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1880 217 166 10 chr9 46020222 46020733 -71841894 + MLT1E LTR MaLR 3 593 0 428 256 33 61 chr9 46021992 46022172 -71840455 - L2 LINE L2 -2 3311 3137 675 265 31 76 chr9 46022185 46022566 -71840061 - L2 LINE L2 -8 3305 2942 563 311 145 9 chr9 46022662 46023090 -71839537 + L2 LINE L2 1604 2089 -1225 201 246 0 53 chr9 46023115 46023172 -71839455 + L3 LINE CR1 892 945 -632 456 314 86 9 chr9 46023225 46023437 -71839190 + MIR SINE MIR 16 241 -21 7271 45 9 0 chr9 46023484 46024376 -71838251 + L1PA6 LINE L1 5254 6153 -1 665 313 23 17 chr9 46024692 46024931 -71837696 + MIR SINE MIR 14 248 -14 1250 235 89 86 chr9 46025099 46025431 -71837196 + LTR33 LTR ERVL 6 342 -179 238 24 0 49 chr9 46025431 46025472 -71837155 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 1250 235 89 86 chr9 46025472 46025653 -71836974 + LTR33 LTR ERVL 342 521 0 3225 134 12 0 chr9 46026282 46026767 -71835860 + L1MA3 LINE L1 16 506 -7059 * 7004 112 37 2 chr9 46026763 46028144 -71834483 + L1MA3 LINE L1 2459 3888 -3677 3197 134 24 4 chr9 46028142 46028847 -71833780 + L1MA3 LINE L1 6477 7196 -528 * 1749 152 7 4 chr9 46028852 46029296 -71833331 + AluJb SINE Alu 23 467 0 3258 112 9 24 chr9 46029296 46029841 -71832786 + L1MA3 LINE L1 7188 7724 0 22 0 0 0 chr9 46029841 46029863 -71832764 + AT_rich Low_complexity Low_complexity 1 22 0 2271 117 0 0 chr9 46030547 46030847 -71831780 - AluSx SINE Alu -2 310 11 23 78 0 0 chr9 46031187 46031238 -71831389 + AT_rich Low_complexity Low_complexity 1 51 0 1398 226 94 66 chr9 46031563 46032188 -71830439 + L1MC5 LINE L1 6542 7204 -757 530 219 26 77 chr9 46032194 46032427 -71830200 + L1MC5 LINE L1 7275 7495 -466 27 29 0 0 chr9 46032772 46032806 -71829821 + AT_rich Low_complexity Low_complexity 1 34 0 192 241 289 12 chr9 46032907 46032990 -71829637 - MIR SINE MIR -83 179 74 4059 207 87 56 chr9 46033010 46034154 -71828473 + L1ME LINE L1 3897 5112 -1054 1511 99 14 14 chr9 46034154 46034375 -71828252 - AluSg/x SINE Alu -4 306 86 4059 207 87 56 chr9 46034375 46034864 -71827763 + L1ME LINE L1 5112 5584 -582 394 219 0 0 chr9 46034868 46034950 -71827677 + MLT2D LTR ERVL 6 87 -327 213 65 0 0 chr9 46034950 46034981 -71827646 + (GA)n Simple_repeat Simple_repeat 2 32 0 1360 184 48 27 chr9 46035008 46035316 -71827311 + MLT2D LTR ERVL 82 403 -61 245 89 22 0 chr9 46035316 46035361 -71827266 + (CA)n Simple_repeat Simple_repeat 2 47 0 1360 184 48 27 chr9 46035361 46035423 -71827204 + MLT2D LTR ERVL 403 462 -2 248 169 13 104 chr9 46035428 46035505 -71827122 + L1ME LINE L1 5582 5651 -513 1172 264 114 31 chr9 46036131 46036594 -71826033 + L2 LINE L2 2791 3305 -8 200 220 0 40 chr9 46037312 46037362 -71825265 + G-rich Low_complexity Low_complexity 4 51 0 347 263 91 108 chr9 46037722 46038284 -71824343 + LTR67 LTR ERVL 6 557 0 228 291 63 24 chr9 46038527 46038654 -71823973 + L1ME4a LINE L1 5977 6108 -13 966 308 83 46 chr9 46040984 46041747 -71820880 + L2 LINE L2 2108 2898 -416 1156 215 15 27 chr9 46042399 46042659 -71819968 + MIR SINE MIR 2 258 -4 2167 218 30 27 chr9 46043195 46043756 -71818871 + L1ME3 LINE L1 5600 6162 0 2323 98 0 0 chr9 46043796 46044093 -71818534 - AluSq SINE Alu -16 297 1 1760 180 38 11 chr9 46044191 46044558 -71818069 + MLT1B LTR MaLR 14 390 0 9624 167 111 30 chr9 46044853 46045026 -71817601 + L1M1 LINE L1 3466 3624 -3941 2072 124 0 37 chr9 46045026 46045349 -71817278 + AluY SINE Alu 1 311 0 9624 167 111 30 chr9 46045349 46046143 -71816484 + L1M1 LINE L1 3624 4352 -3213 1869 130 16 29 chr9 46046143 46046451 -71816176 + AluSp SINE Alu 1 304 -9 9624 167 111 30 chr9 46046451 46046638 -71815989 + L1M1 LINE L1 4352 4522 -3043 796 165 0 99 chr9 46046638 46046820 -71815807 + FRAM SINE Alu 3 166 0 9624 167 111 30 chr9 46046820 46048108 -71814519 + L1M1 LINE L1 4522 6132 -1433 1242 163 41 0 chr9 46048108 46048354 -71814273 + L1MA6 LINE L1 6035 6290 -10 1851 231 109 33 chr9 46048388 46049056 -71813571 + L1ME3 LINE L1 5444 6162 0 2699 20 0 0 chr9 46049157 46049462 -71813165 - AluYb8 SINE Alu -13 305 1 231 240 0 0 chr9 46049996 46050046 -71812581 + (TA)n Simple_repeat Simple_repeat 2 51 0 1255 60 0 22 chr9 46050534 46050718 -71811909 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1981 138 34 7 chr9 46050726 46051022 -71811605 - AluSx SINE Alu -8 304 1 405 254 101 102 chr9 46051034 46051446 -71811181 + LTR16A1 LTR ERVL 52 457 0 278 328 22 0 chr9 46051450 46051584 -71811043 + HAL1 LINE L1 771 907 -1600 1489 217 30 3 chr9 46053251 46053583 -71809044 + MER58B DNA MER1_type 1 341 0 201 296 159 23 chr9 46053724 46053856 -71808771 - MIR SINE MIR -23 185 36 1753 193 46 44 chr9 46053901 46054332 -71808295 + MSTB1 LTR MaLR 1 432 0 318 26 0 0 chr9 46054339 46054378 -71808249 + (CA)n Simple_repeat Simple_repeat 2 40 0 273 273 15 0 chr9 46054624 46054690 -71807937 + MIR SINE MIR 170 236 -26 490 264 92 6 chr9 46055411 46055585 -71807042 - MER112 DNA MER1_type -6 254 66 22 0 0 0 chr9 46056912 46056934 -71805693 + AT_rich Low_complexity Low_complexity 1 22 0 639 302 46 34 chr9 46057319 46057708 -71804919 + LTR16C LTR ERVL 46 466 -25 1783 106 0 0 chr9 46058110 46058337 -71804290 - AluSx SINE Alu -69 243 17 1125 269 89 32 chr9 46058528 46058934 -71803693 + L2 LINE L2 2885 3313 0 196 87 0 43 chr9 46061664 46061710 -71800917 + (CAAAA)n Simple_repeat Simple_repeat 3 46 0 1441 146 9 0 chr9 46061894 46062114 -71800513 + AluJo SINE Alu 84 305 -7 357 289 92 98 chr9 46064181 46064711 -71797916 + L1M2 LINE L1 451 977 -5872 264 218 26 13 chr9 46064927 46065005 -71797622 + AluS SINE Alu 2 80 -223 548 238 65 75 chr9 46065048 46065355 -71797272 + AluJo SINE Alu 9 312 0 321 118 0 0 chr9 46065376 46065427 -71797200 + (GGA)n Simple_repeat Simple_repeat 3 53 0 541 175 119 44 chr9 46067885 46068045 -71794582 - FRAM SINE Alu 0 176 5 183 317 0 0 chr9 46068108 46068168 -71794459 - MIR SINE MIR -197 65 6 286 195 156 0 chr9 46068241 46068318 -71794309 - AluSg SINE Alu -192 108 20 22 94 0 0 chr9 46068757 46068821 -71793806 + GC_rich Low_complexity Low_complexity 1 64 0 31 26 0 0 chr9 46068858 46068896 -71793731 + GC_rich Low_complexity Low_complexity 1 38 0 299 302 116 86 chr9 46070127 46070203 -71792424 - L2 LINE L2 -76 3196 3124 2001 104 63 0 chr9 46070203 46070490 -71792137 + AluSx SINE Alu 1 305 -7 299 302 116 86 chr9 46070490 46070681 -71791946 - L2 LINE L2 -148 3124 2921 1657 178 24 3 chr9 46071788 46072075 -71790552 + AluJo SINE Alu 1 293 -19 282 180 0 0 chr9 46072313 46072363 -71790264 + Tigger5 DNA MER2_type 1 50 -2273 2171 107 7 0 chr9 46072386 46072677 -71789950 - AluSx SINE Alu -19 293 1 262 271 78 39 chr9 46073490 46073619 -71789008 - MLT1K LTR MaLR -369 219 86 314 283 39 43 chr9 46073677 46073814 -71788813 + L1ME4a LINE L1 5696 5833 -288 2312 101 0 0 chr9 46073814 46074112 -71788515 - AluSg SINE Alu -12 298 1 314 283 39 43 chr9 46074112 46074204 -71788423 + L1ME4a LINE L1 5833 5924 -197 192 152 0 0 chr9 46075038 46075071 -71787556 + (TATATG)n Simple_repeat Simple_repeat 4 36 0 514 171 0 0 chr9 46075371 46075459 -71787168 - Tigger5 DNA MER2_type -2235 88 1 363 23 0 0 chr9 46075732 46075776 -71786851 + (CA)n Simple_repeat Simple_repeat 2 45 0 205 191 0 0 chr9 46076166 46076208 -71786419 + T-rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr9 46076351 46076372 -71786255 + AT_rich Low_complexity Low_complexity 1 21 0 8767 29 1 0 chr9 46076372 46078184 -71784443 - L1PA3 LINE L1 -4 6151 4338 10785 31 2 0 chr9 46078184 46079542 -71783085 + L1PA3 LINE L1 2961 4321 -1825 1235 121 43 26 chr9 46080889 46081121 -71781506 + ORSL DNA AcHobo 40 275 0 327 49 0 0 chr9 46081274 46081315 -71781312 + (CA)n Simple_repeat Simple_repeat 2 42 0 1816 141 188 3 chr9 46081810 46082171 -71780456 + MSTA LTR MaLR 1 428 0 207 0 0 0 chr9 46082247 46082270 -71780357 + (A)n Simple_repeat Simple_repeat 1 23 0 523 363 27 18 chr9 46082363 46082691 -71779936 + L1ME4a LINE L1 4878 5208 -938 243 303 142 25 chr9 46082732 46083092 -71779535 + L1ME4a LINE L1 5260 5661 -2147 2376 92 0 0 chr9 46083134 46083438 -71779189 - AluY SINE Alu -7 304 1 246 245 72 99 chr9 46083460 46083656 -71778971 + L1ME4a LINE L1 5661 5853 -268 2019 123 19 26 chr9 46083656 46083964 -71778663 - AluSx SINE Alu 0 312 7 246 245 72 99 chr9 46083964 46084039 -71778588 + L1ME4a LINE L1 5853 5929 -192 459 289 178 26 chr9 46084551 46085080 -71777547 - L1ME4a LINE L1 -31 6090 5482 13771 199 31 19 chr9 46087939 46088849 -71773778 - L1MA8 LINE L1 -8 6985 6087 2376 137 28 19 chr9 46088849 46089273 -71773354 - MSTA LTR MaLR 0 428 1 13771 199 31 19 chr9 46089273 46094028 -71768599 - L1MA8 LINE L1 -906 6087 1228 533 141 0 0 chr9 46094028 46094113 -71768514 - MLT1A1 LTR MaLR -280 85 1 1826 164 63 3 chr9 46094114 46094492 -71768135 - L1 LINE L1 -927 5921 5521 1614 250 58 22 chr9 46094530 46095133 -71767494 - L1M1 LINE L1 -4291 3274 2643 2249 179 29 19 chr9 46095133 46095553 -71767074 + MSTC LTR MaLR 1 424 -4 1614 250 58 22 chr9 46095553 46095617 -71767010 - L1M1 LINE L1 -4922 2643 2583 * 2420 179 16 47 chr9 46095615 46096169 -71766458 - L1M1 LINE L1 -6493 996 460 10039 210 65 17 chr9 46096826 46097879 -71764748 - L1M4 LINE L1 -711 5971 4970 1479 182 67 34 chr9 46097879 46098176 -71764451 - AluJo SINE Alu -3 309 3 10039 210 65 17 chr9 46098176 46098510 -71764117 - L1M4 LINE L1 -1712 4970 4654 261 0 0 0 chr9 46098510 46098539 -71764088 + (TTA)n Simple_repeat Simple_repeat 2 30 0 2107 113 3 7 chr9 46098541 46098825 -71763802 - AluSx SINE Alu -29 283 1 10039 210 65 17 chr9 46098825 46101018 -71761609 - L1M4 LINE L1 -2028 4654 2201 3252 231 75 24 chr9 46101029 46102385 -71760242 - L1M4 LINE L1 -4598 2048 614 454 202 109 22 chr9 46102414 46102597 -71760030 - L1M4 LINE L1 -1033 5113 4915 1733 175 7 7 chr9 46102600 46102903 -71759724 - AluJo SINE Alu -9 303 1 243 239 0 0 chr9 46103003 46103070 -71759557 + (TA)n Simple_repeat Simple_repeat 1 67 0 234 256 30 79 chr9 46103099 46103263 -71759364 - L1ME3A LINE L1 -113 6057 5902 21 0 0 0 chr9 46103453 46103474 -71759153 + AT_rich Low_complexity Low_complexity 1 21 0 2111 137 0 13 chr9 46104868 46105183 -71757444 - AluSx SINE Alu -1 311 1 1583 147 55 10 chr9 46106463 46106770 -71755857 + MER33 DNA MER1_type 1 321 -3 190 342 0 13 chr9 46108910 46108986 -71753641 - L2 LINE L2 -19 3294 3220 24 0 0 0 chr9 46111426 46111450 -71751177 + AT_rich Low_complexity Low_complexity 1 24 0 246 220 0 0 chr9 46111687 46111737 -71750890 - L2 LINE L2 0 3313 3264 1349 184 4 12 chr9 46114040 46114290 -71748337 - AluJo SINE Alu -21 291 44 187 351 0 27 chr9 46115654 46115728 -71746899 - MER5A DNA MER1_type -26 163 92 15401 114 32 6 chr9 46115950 46118305 -71744322 + Tigger1 DNA MER2_type 1 2416 -2 2386 96 0 0 chr9 46118976 46119278 -71743349 + AluSq SINE Alu 1 302 -11 206 294 0 109 chr9 46119294 46119413 -71743214 + MER5A DNA MER1_type 82 187 -2 240 35 0 0 chr9 46119458 46119487 -71743140 + (ATG)n Simple_repeat Simple_repeat 2 30 0 181 305 34 17 chr9 46120064 46120123 -71742504 + L2 LINE L2 3195 3254 -18 268 229 0 0 chr9 46120428 46120476 -71742151 + L2 LINE L2 3195 3242 -71 2203 118 0 0 chr9 46121627 46121924 -71740703 + AluSx SINE Alu 1 297 -15 543 236 133 39 chr9 46122400 46122730 -71739897 - L1ME4a LINE L1 -1 6120 5760 499 279 162 17 chr9 46122775 46123072 -71739555 - L1ME4a LINE L1 -444 5677 5338 22 35 0 0 chr9 46123230 46123259 -71739368 + AT_rich Low_complexity Low_complexity 1 29 0 1917 161 61 34 chr9 46123300 46123346 -71739281 - L1MA9 LINE L1 -6 6306 6263 288 77 0 0 chr9 46123346 46123385 -71739242 + (CA)n Simple_repeat Simple_repeat 2 40 0 1917 161 61 34 chr9 46123385 46123789 -71738838 - L1MA9 LINE L1 -49 6263 5845 379 322 51 51 chr9 46123789 46124162 -71738465 - L1ME4a LINE L1 -1137 5009 4637 3255 143 84 89 chr9 46124163 46124959 -71737668 - L1MB7 LINE L1 -54 6130 5339 28 48 0 0 chr9 46125042 46125084 -71737543 + AT_rich Low_complexity Low_complexity 1 42 0 283 269 0 39 chr9 46125256 46125334 -71737293 - MIR SINE MIR -13 249 175 2305 107 0 0 chr9 46125358 46125656 -71736971 + AluSx SINE Alu 2 299 -13 285 264 108 20 chr9 46125686 46125834 -71736793 - L1ME LINE L1 -255 5866 5706 550 325 40 4 chr9 46125857 46126106 -71736521 - MIR SINE MIR -2 260 3 339 311 177 6 chr9 46127216 46127380 -71735247 - MIR SINE MIR -51 211 20 211 311 89 33 chr9 46127810 46127900 -71734727 + MIR3 SINE MIR 98 192 -16 * 335 295 174 13 chr9 46127877 46128026 -71734601 - MER5B DNA MER1_type -5 173 1 993 256 20 16 chr9 46130132 46130382 -71732245 - MIR SINE MIR 0 262 12 243 0 0 0 chr9 46130577 46130604 -71732023 + (A)n Simple_repeat Simple_repeat 1 27 0 285 289 128 16 chr9 46131146 46131388 -71731239 - L1ME4a LINE L1 -218 5903 5635 1962 128 55 6 chr9 46131537 46131864 -71730763 + MER2 DNA MER2_type 1 343 -1 184 30 61 0 chr9 46132255 46132288 -71730339 + (TA)n Simple_repeat Simple_repeat 1 35 0 764 166 48 53 chr9 46132436 46132595 -71730032 + MER5A DNA MER1_type 1 160 -29 2150 88 0 0 chr9 46132595 46132857 -71729770 + AluSc SINE Alu 1 262 -47 764 166 48 53 chr9 46132857 46132884 -71729743 + MER5A DNA MER1_type 160 186 -3 1906 158 0 3 chr9 46133408 46133699 -71728928 - AluJb SINE Alu -22 290 1 386 284 37 0 chr9 46133993 46134102 -71728525 - MIR SINE MIR -2 260 148 4139 172 160 21 chr9 46134133 46135079 -71727548 - L1MC3 LINE L1 0 7785 6709 21 57 0 0 chr9 46135079 46135114 -71727513 + AT_rich Low_complexity Low_complexity 1 35 0 2232 95 3 3 chr9 46135128 46135424 -71727203 - AluSc SINE Alu -13 296 1 353 302 21 0 chr9 46135427 46135523 -71727104 - MIR SINE MIR -114 148 51 209 386 28 40 chr9 46136290 46136466 -71726161 - MIR3 SINE MIR -23 185 12 257 153 0 34 chr9 46136493 46136552 -71726075 + (TATG)n Simple_repeat Simple_repeat 3 59 0 192 261 0 0 chr9 46136704 46136769 -71725858 + (TATG)n Simple_repeat Simple_repeat 1 65 0 258 247 11 101 chr9 46136918 46137007 -71725620 - L2 LINE L2 -23 3249 3169 1296 221 108 55 chr9 46137048 46137090 -71725537 + L2 LINE L2 2075 2113 -1201 1129 149 142 51 chr9 46137090 46137386 -71725241 - MER33 DNA MER1_type 0 324 2 1296 221 108 55 chr9 46137386 46137741 -71724886 + L2 LINE L2 2113 2493 -821 396 329 134 11 chr9 46138676 46139117 -71723510 - L1ME4a LINE L1 -216 5905 5411 543 288 66 19 chr9 46139397 46139606 -71723021 - MIR SINE MIR 0 262 43 181 355 52 45 chr9 46140026 46140181 -71722446 - L2 LINE L2 0 3272 3117 2035 133 3 3 chr9 46140704 46141004 -71721623 - AluSx SINE Alu -12 300 1 289 240 188 0 chr9 46141111 46141207 -71721420 - L2 LINE L2 0 3272 3159 363 239 133 35 chr9 46141218 46141331 -71721296 + MIR SINE MIR 1 124 -138 447 236 178 40 chr9 46141985 46142159 -71720468 + MIR SINE MIR 48 245 -17 194 276 35 58 chr9 46142373 46142460 -71720167 + L2 LINE L2 2965 3049 -223 386 288 66 50 chr9 46142543 46142741 -71719886 - MIR SINE MIR -59 203 3 447 281 179 30 chr9 46143934 46144169 -71718458 - Charlie8 DNA MER1_type -2147 270 1 185 301 176 25 chr9 46144354 46144553 -71718074 - L2 LINE L2 -625 2689 2461 303 330 39 29 chr9 46146112 46146215 -71716412 + L2 LINE L2 3148 3251 -21 484 261 159 38 chr9 46147422 46147686 -71714941 + L1MC/D LINE L1 5497 5792 -2016 266 274 0 16 chr9 46149673 46149735 -71712892 + MIR3 SINE MIR 97 157 -51 255 262 171 27 chr9 46149880 46150046 -71712581 + MIR3 SINE MIR 2 191 -69 350 271 164 14 chr9 46150338 46150478 -71712149 - MIR3 SINE MIR -18 190 30 1876 146 3 44 chr9 46150668 46150989 -71711638 - AluJo SINE Alu -4 308 1 417 257 216 50 chr9 46152198 46152420 -71710207 - MIR SINE MIR -3 259 1 330 286 95 105 chr9 46152569 46152863 -71709764 + L2 LINE L2 2982 3272 0 827 244 15 0 chr9 46153192 46153389 -71709238 - MER3 DNA MER1_type 0 209 10 245 129 0 16 chr9 46155154 46155216 -71707411 + (TAAAA)n Simple_repeat Simple_repeat 4 64 0 24 19 6 0 chr9 46156351 46156414 -71706213 + GC_rich Low_complexity Low_complexity 1 31 0 26 50 0 0 chr9 46156867 46156907 -71705720 + AT_rich Low_complexity Low_complexity 1 40 0 413 42 0 66 chr9 46157236 46157476 -71705151 + AluY SINE Alu 1 289 -22 2782 16 0 0 chr9 46157476 46157783 -71704844 + AluYb8 SINE Alu 1 307 -11 2106 105 7 0 chr9 46158020 46158315 -71704312 + AluSg SINE Alu 1 297 -13 2261 100 10 0 chr9 46158380 46158690 -71703937 + AluSq SINE Alu 1 313 0 247 286 0 0 chr9 46159215 46159271 -71703356 - MIR3 SINE MIR -49 159 104 8303 56 1 0 chr9 46159477 46160442 -71702185 - LTR5 LTR ERVK -3 966 1 1763 97 116 11 chr9 46160552 46160819 -71701808 - AluSx SINE Alu -17 295 1 23 0 0 0 chr9 46160828 46160851 -71701776 + AT_rich Low_complexity Low_complexity 1 23 0 312 258 38 57 chr9 46161017 46161226 -71701401 + L1ME4a LINE L1 5823 6027 -94 599 203 42 8 chr9 46161584 46161702 -71700925 + FLAM_A SINE Alu 1 122 -11 2118 82 48 17 chr9 46161935 46162229 -71700398 + AluY SINE Alu 1 303 -8 855 299 36 30 chr9 46163720 46164084 -71698543 - L2 LINE L2 -1 3312 2947 405 327 70 26 chr9 46164859 46165171 -71697456 - MERVL LTR ERVL -685 4800 4475 576 231 113 9 chr9 46165182 46165411 -71697216 - MLT1F LTR MaLR -5 537 285 369 258 104 12 chr9 46165531 46165694 -71696933 - MLT1F LTR MaLR -415 180 3 2148 171 16 3 chr9 46165711 46166092 -71696535 - MSTB LTR MaLR 0 426 41 321 148 0 0 chr9 46166165 46166219 -71696408 - MSTB LTR MaLR -372 54 1 1242 355 93 65 chr9 46166291 46166738 -71695889 - MERVL LTR ERVL -1378 4386 3906 2729 70 21 103 chr9 46166738 46167222 -71695405 - MLT2A1 LTR ERVL 0 444 1 1242 355 93 65 chr9 46167222 46167557 -71695070 - MERVL LTR ERVL -1858 3906 3582 1142 158 133 66 chr9 46167559 46167700 -71694927 + MER2 DNA MER2_type 1 131 -214 2250 112 3 3 chr9 46167700 46168003 -71694624 - AluSq SINE Alu -10 303 1 1142 158 133 66 chr9 46168003 46168178 -71694449 + MER2 DNA MER2_type 131 338 -7 1236 305 88 13 chr9 46168264 46168874 -71693753 - MERVL LTR ERVL -2244 3410 2755 250 309 73 52 chr9 46168976 46169112 -71693515 + L2 LINE L2 3133 3271 -1 2072 102 0 4 chr9 46169237 46169511 -71693116 + AluSg SINE Alu 36 308 -2 198 0 0 0 chr9 46169628 46169650 -71692977 + (CA)n Simple_repeat Simple_repeat 1 22 0 224 289 19 0 chr9 46169711 46169763 -71692864 + L2 LINE L2 3234 3286 -27 4511 78 9 49 chr9 46169864 46170532 -71692095 + L1PA7 LINE L1 5514 6154 0 193 390 0 0 chr9 46170669 46170751 -71691876 + L2 LINE L2 3186 3267 -5 449 178 78 23 chr9 46170971 46171100 -71691527 - L1MB7 LINE L1 0 6184 6049 2180 128 0 3 chr9 46171102 46171415 -71691212 - AluSx SINE Alu 0 312 1 2737 262 67 14 chr9 46171480 46172434 -71690193 - L1MCb LINE L1 -5038 1007 3 463 218 48 8 chr9 46172457 46172581 -71690046 - MER58B DNA MER1_type -10 331 203 297 167 69 0 chr9 46172585 46172687 -71689940 - L1M4c LINE L1 -2965 3679 3571 2596 71 26 3 chr9 46172715 46173066 -71689561 - L1PB1 LINE L1 -2 6149 5791 342 259 47 0 chr9 46173080 46173165 -71689462 - L1MC4 LINE L1 -1339 6703 6615 314 277 0 43 chr9 46173082 46173176 -71689451 + L1MC4 LINE L1 6614 6703 -1339 * 9465 196 49 41 chr9 46173195 46173787 -71688840 - L1P5 LINE L1 -362 6505 5919 198 0 0 0 chr9 46173787 46173809 -71688818 + (ATG)n Simple_repeat Simple_repeat 2 23 0 9465 196 49 41 chr9 46173809 46175295 -71687332 - L1P5 LINE L1 -948 5919 4447 1691 91 9 0 chr9 46175295 46175526 -71687101 - AluSp SINE Alu 0 313 81 9465 196 49 41 chr9 46175526 46178429 -71684198 - L1P5 LINE L1 -2420 4447 1521 759 222 17 32 chr9 46178431 46178484 -71684143 + L1M4c LINE L1 2174 2226 -4156 2108 113 0 33 chr9 46178484 46178786 -71683841 + AluSx SINE Alu 1 292 -20 759 222 17 32 chr9 46178786 46179055 -71683572 + L1M4c LINE L1 2226 2487 -3895 * 5815 244 30 54 chr9 46179049 46180326 -71682301 - L1M4c LINE L1 -4139 2507 1201 1526 219 7 0 chr9 46180326 46180634 -71681993 - AluJo SINE Alu 0 310 1 5815 244 30 54 chr9 46180634 46180704 -71681923 - L1M4c LINE L1 -5445 1201 1131 2021 135 0 0 chr9 46180704 46181009 -71681618 + AluSx SINE Alu 2 306 0 5815 244 30 54 chr9 46181009 46181722 -71680905 - L1M4c LINE L1 -5515 1131 456 2140 184 60 2 chr9 46181722 46182123 -71680504 + MSTB LTR MaLR 3 426 0 5815 244 30 54 chr9 46182123 46182569 -71680058 - L1M4c LINE L1 -6190 456 1 566 302 69 40 chr9 46182578 46183532 -71679095 - L1MEd LINE L1 -4760 1550 531 1603 172 124 8 chr9 46183532 46183887 -71678740 - MSTD LTR MaLR 0 396 1 22 0 0 0 chr9 46184871 46184893 -71677734 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr9 46185939 46185961 -71676666 + AT_rich Low_complexity Low_complexity 1 22 0 2237 110 0 0 chr9 46186642 46186934 -71675693 + AluSx SINE Alu 19 310 -2 1859 133 66 0 chr9 46187059 46187376 -71675251 + MER44D DNA MER2_type 2 609 0 321 271 0 0 chr9 46188031 46188101 -71674526 - L2 LINE L2 0 3313 3244 778 148 0 92 chr9 46188319 46188536 -71674091 - L1MCa LINE L1 -3962 2464 2268 1641 171 21 65 chr9 46188538 46188925 -71673702 - MLT1B LTR MaLR -1 389 20 1871 150 154 25 chr9 46188945 46189053 -71673574 - L1MCa LINE L1 -4161 2265 2172 2314 118 3 6 chr9 46189053 46189367 -71673260 + AluSq SINE Alu 1 313 0 1871 150 154 25 chr9 46189367 46190100 -71672527 - L1MCa LINE L1 -4254 2172 1219 2364 86 0 3 chr9 46191356 46191658 -71670969 + AluY SINE Alu 1 301 -10 349 305 181 6 chr9 46191685 46191862 -71670765 + MIR SINE MIR 20 227 -35 1595 155 27 27 chr9 46192067 46192403 -71670224 + L1MB8 LINE L1 5837 6172 -6 341 238 100 44 chr9 46192643 46192803 -71669824 + L1ME4a LINE L1 5946 6114 -7 27 0 0 0 chr9 46192835 46192862 -71669765 + AT_rich Low_complexity Low_complexity 1 27 0 227 366 0 0 chr9 46192959 46193041 -71669586 + L2 LINE L2 2678 2759 -555 299 333 60 0 chr9 46193535 46193652 -71668975 - MIR SINE MIR -57 205 82 630 230 110 62 chr9 46193853 46194062 -71668565 - MIR SINE MIR -24 238 20 24 53 0 0 chr9 46194739 46194777 -71667850 + AT_rich Low_complexity Low_complexity 1 38 0 274 192 80 72 chr9 46195246 46195371 -71667256 - L2 LINE L2 -1059 2255 2130 237 226 36 12 chr9 46195740 46195824 -71666803 + (TAGA)n Simple_repeat Simple_repeat 1 86 0 5142 103 60 38 chr9 46195925 46196752 -71665875 + SVA Other Other 539 1384 -2 2224 122 0 0 chr9 46197531 46197827 -71664800 + AluSx SINE Alu 1 296 -16 2011 137 0 7 chr9 46197895 46198188 -71664439 + AluSx SINE Alu 1 291 -21 491 274 58 12 chr9 46198389 46198630 -71663997 + MLT1L LTR MaLR 159 410 -205 22 0 0 0 chr9 46198897 46198919 -71663708 + AT_rich Low_complexity Low_complexity 1 22 0 808 327 112 22 chr9 46199156 46199900 -71662727 - L2 LINE L2 0 3313 2483 231 264 55 44 chr9 46199904 46199995 -71662632 - L2 LINE L2 -980 2334 2243 879 114 0 23 chr9 46200360 46200492 -71662135 + FLAM_C SINE Alu 2 130 -3 21 36 0 0 chr9 46200502 46200530 -71662097 + AT_rich Low_complexity Low_complexity 1 28 0 735 276 58 35 chr9 46200542 46200941 -71661686 + L1ME4a LINE L1 5501 5908 -213 198 118 0 0 chr9 46201010 46201044 -71661583 + (TTCC)n Simple_repeat Simple_repeat 1 34 0 213 224 0 0 chr9 46201639 46201697 -71660930 + L2 LINE L2 2917 2974 -298 953 154 82 10 chr9 46202237 46202432 -71660195 - MER89 LTR ERV1 -2 557 349 868 253 82 31 chr9 46202478 46202830 -71659797 - MER66A LTR ERV1 -12 466 97 560 209 9 0 chr9 46202914 46203029 -71659598 - MER66B LTR ERV1 -10 476 361 1897 204 26 61 chr9 46203130 46203269 -71659358 - MER66A-int LTR ERV1 0 6676 6534 1973 152 3 0 chr9 46203269 46203558 -71659069 + AluSx SINE Alu 1 290 -22 1897 204 26 61 chr9 46203558 46203963 -71658664 - MER66A-int LTR ERV1 -142 6534 6151 1728 160 7 3 chr9 46204006 46204299 -71658328 - AluY SINE Alu -17 294 1 1157 106 24 0 chr9 46204559 46204729 -71657898 - AluY SINE Alu -137 174 1 1952 268 40 25 chr9 46204748 46205782 -71656845 - MER66A-int LTR ERV1 -1585 6171 4604 * 7645 202 61 33 chr9 46205781 46207154 -71655473 - MER66A-int LTR ERV1 -3834 2842 1489 2492 35 0 0 chr9 46207154 46207437 -71655190 + AluY SINE Alu 18 300 -11 7645 202 61 33 chr9 46207437 46208560 -71654067 - MER66A-int LTR ERV1 -5187 1489 400 334 291 19 19 chr9 46208546 46208649 -71653978 - MER66A-int LTR ERV1 -6390 286 184 * 1088 221 52 147 chr9 46208731 46209220 -71653407 - MER66A LTR ERV1 -10 520 72 922 222 97 9 chr9 46209212 46209428 -71653199 - MER89 LTR ERV1 -324 235 1 * 795 177 14 7 chr9 46211123 46211270 -71651357 - MLT1E3 LTR MaLR -4 620 473 1051 301 107 32 chr9 46211299 46211830 -71650797 + MLT1K LTR MaLR 2 572 -16 748 211 0 0 chr9 46211844 46211972 -71650655 + FLAM_A SINE Alu 1 128 -5 1463 98 0 5 chr9 46212567 46212788 -71649839 + AluSq SINE Alu 91 310 0 426 297 13 26 chr9 46213446 46213601 -71649026 + GA-rich Low_complexity Low_complexity 4 156 0 303 271 8 85 chr9 46214759 46214840 -71647787 - MIR SINE MIR -19 243 174 2508 56 0 28 chr9 46214840 46215160 -71647467 + AluY SINE Alu 1 311 0 303 271 8 85 chr9 46215160 46215207 -71647420 - MIR SINE MIR -88 174 125 184 246 0 167 chr9 46216585 46216699 -71645928 - MIR3 SINE MIR -6 202 108 2177 71 0 18 chr9 46216931 46217212 -71645415 + AluSx SINE Alu 1 276 -36 369 0 0 0 chr9 46217214 46217255 -71645372 + (CA)n Simple_repeat Simple_repeat 2 42 0 303 231 0 60 chr9 46217849 46217966 -71644661 + GA-rich Low_complexity Low_complexity 1 110 0 184 247 34 0 chr9 46217977 46218066 -71644561 + GA-rich Low_complexity Low_complexity 4 95 0 241 297 144 18 chr9 46218538 46218760 -71643867 + MER102a DNA MER1_type 73 322 -8 212 293 17 0 chr9 46219665 46219723 -71642904 - L2 LINE L2 -36 3236 3178 1881 139 58 73 chr9 46219792 46220173 -71642454 - THE1C LTR MaLR 0 375 1 562 211 234 19 chr9 46220193 46220402 -71642225 + MIR SINE MIR 3 256 -6 2669 103 91 5 chr9 46220407 46220815 -71641812 - LTR7 LTR ERV1 -7 443 1 406 232 12 0 chr9 46221082 46221164 -71641463 - MER82 DNA MER2_type 0 653 571 2178 202 109 32 chr9 46221306 46221836 -71640791 - MER82 DNA MER2_type -82 571 1 28 29 0 0 chr9 46222042 46222077 -71640550 + AT_rich Low_complexity Low_complexity 1 35 0 181 200 0 0 chr9 46223713 46223748 -71638879 + L2 LINE L2 3277 3311 -2 341 283 100 0 chr9 46224844 46224964 -71637663 - MER94 DNA DNA -1 133 2 1651 139 3 48 chr9 46225317 46225612 -71637015 + AluJb SINE Alu 1 282 -30 207 0 0 0 chr9 46225615 46225638 -71636989 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 407 227 91 19 chr9 46225644 46225798 -71636829 + L1ME4a LINE L1 5955 6119 -2 328 219 74 112 chr9 46226818 46227033 -71635594 - MLT1K LTR MaLR 0 588 382 1484 210 0 39 chr9 46227575 46227880 -71634747 - AluJo SINE Alu -17 295 3 190 350 70 0 chr9 46228370 46228470 -71634157 - L2 LINE L2 -3 3310 3204 298 218 35 58 chr9 46228674 46228761 -71633866 + MER20B DNA MER1_type 1 85 -698 216 0 0 0 chr9 46229544 46229568 -71633059 + (T)n Simple_repeat Simple_repeat 1 24 0 1189 54 7 0 chr9 46229617 46229764 -71632863 - L1PA4 LINE L1 0 6155 6008 1687 158 70 38 chr9 46229921 46230294 -71632333 - L1MB8 LINE L1 -1 6177 5793 851 134 16 0 chr9 46230295 46230422 -71632205 - AluSq/x SINE Alu -183 129 1 263 269 77 46 chr9 46231265 46231395 -71631232 - MER94 DNA DNA 0 134 1 308 212 109 36 chr9 46232061 46232198 -71630429 + L1MEd LINE L1 945 1091 -5028 243 317 37 0 chr9 46232223 46232305 -71630322 - MER63 DNA MER1_type 0 1061 977 396 250 113 57 chr9 46232398 46232698 -71629929 + L1MEd LINE L1 1101 1417 -4712 1359 133 5 24 chr9 46232713 46232923 -71629704 + THE1B LTR MaLR 1 206 -158 2056 128 51 69 chr9 46234133 46234523 -71628104 - MSTB LTR MaLR -43 383 1 791 252 51 85 chr9 46234524 46234877 -71627750 + L2 LINE L2 2967 3307 -6 215 299 0 30 chr9 46234915 46234982 -71627645 - L2 LINE L2 -3 3310 3246 279 308 69 15 chr9 46235077 46235207 -71627420 + L3 LINE CR1 1190 1326 -251 2160 122 3 0 chr9 46235432 46235727 -71626900 + AluSx SINE Alu 1 296 -16 211 402 34 29 chr9 46235916 46236125 -71626502 + L2 LINE L2 2827 3036 -236 360 190 13 13 chr9 46236230 46236309 -71626318 + Charlie3 DNA MER1_type 3 81 -2629 243 88 0 0 chr9 46236463 46236497 -71626130 + (TTA)n Simple_repeat Simple_repeat 3 36 0 276 313 94 23 chr9 46236497 46236625 -71626002 - MIR SINE MIR -118 144 8 * 289 318 202 27 chr9 46236616 46236745 -71625882 - L3 LINE CR1 -620 957 852 3282 188 7 18 chr9 46236745 46237313 -71625314 + MER68 LTR ERV1 1 562 0 289 318 202 27 chr9 46237313 46237520 -71625107 - L3 LINE CR1 -725 852 562 9292 54 1 0 chr9 46237723 46238886 -71623741 - L1P LINE L1 -3399 2747 1584 964 176 13 0 chr9 46238986 46239139 -71623488 + FRAM SINE Alu 1 150 -26 4304 184 56 56 chr9 46239143 46239650 -71622977 + L1MC3 LINE L1 6591 7097 -688 249 125 25 0 chr9 46239650 46239690 -71622937 + MLT1F1 LTR MaLR 50 90 -477 4304 184 56 56 chr9 46239690 46240192 -71622435 + L1MC3 LINE L1 7096 7639 -146 1721 102 0 4 chr9 46240292 46240528 -71622099 - L1P LINE L1 -5911 235 1 199 243 0 0 chr9 46240632 46240669 -71621958 + L2 LINE L2 3183 3219 -94 329 77 0 0 chr9 46241789 46241841 -71620786 + L1MA3 LINE L1 6252 6303 -2 208 260 146 31 chr9 46241856 46241952 -71620675 + MIR SINE MIR 156 262 0 293 254 0 0 chr9 46241979 46242038 -71620589 + MIR SINE MIR 117 175 -87 584 271 208 8 chr9 46242050 46242286 -71620341 - MLT1G LTR MaLR -8 582 300 2380 126 27 15 chr9 46242286 46242619 -71620008 + MER1B DNA MER1_type 1 337 0 231 243 257 0 chr9 46242619 46242755 -71619872 - L1MDb LINE L1 -6095 314 144 8844 68 0 0 chr9 46242870 46244010 -71618617 + L1P LINE L1 1959 3098 -3048 7541 80 2 18 chr9 46244110 46245139 -71617488 - L1P LINE L1 -4714 1432 420 209 182 0 0 chr9 46245601 46245634 -71616993 + (TG)n Simple_repeat Simple_repeat 1 33 0 2151 158 38 0 chr9 46245765 46246138 -71616489 - MLT1B LTR MaLR 0 390 4 3518 137 46 43 chr9 46246590 46247245 -71615382 + L1MB2 LINE L1 5515 6171 0 234 209 104 30 chr9 46248471 46248538 -71614089 + L1M4 LINE L1 4925 4996 -1150 200 83 0 28 chr9 46248542 46248578 -71614049 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 3146 141 19 19 chr9 46249386 46249905 -71612722 - L1MB3 LINE L1 -7 6176 5658 3157 230 51 16 chr9 46250463 46251514 -71611113 - L1M4 LINE L1 -3149 3495 2398 587 146 0 0 chr9 46251503 46251592 -71611035 + L1MB3 LINE L1 6030 6118 -65 * 2057 200 64 91 chr9 46251586 46252270 -71610357 - L1M4 LINE L1 -5488 1054 389 225 159 0 0 chr9 46253636 46253680 -71608947 + (CA)n Simple_repeat Simple_repeat 1 44 0 223 245 0 0 chr9 46254124 46254173 -71608454 + (TCTG)n Simple_repeat Simple_repeat 3 51 0 1637 83 9 5 chr9 46254790 46255008 -71607619 - AluY SINE Alu -92 219 1 595 218 42 12 chr9 46255009 46255174 -71607453 + L1MDa LINE L1 1792 1961 -4579 * 2154 245 171 17 chr9 46255154 46255523 -71607104 + L1MDa LINE L1 3288 3599 -2941 1442 178 4 0 chr9 46255523 46255754 -71606873 - MER46A DNA MER2_type -2 234 3 2154 245 171 17 chr9 46255754 46256019 -71606608 + L1MDa LINE L1 3599 3822 -2718 2563 119 112 5 chr9 46256019 46256404 -71606223 + MSTA LTR MaLR 1 426 -2 2154 245 171 17 chr9 46256404 46256689 -71605938 + L1MDa LINE L1 3822 4349 -2191 15754 27 0 0 chr9 46256833 46259113 -71603514 - L1P1 LINE L1 -438 5717 3439 1946 120 7 7 chr9 46259113 46259389 -71603238 - AluSx SINE Alu -34 278 3 25 31 0 0 chr9 46259893 46259925 -71602702 + AT_rich Low_complexity Low_complexity 1 32 0 916 168 11 6 chr9 46260969 46261148 -71601479 - MER20 DNA MER1_type -1 218 39 353 245 166 0 chr9 46261220 46261371 -71601256 - MER112 DNA MER1_type 0 260 85 1579 25 0 25 chr9 46261376 46261606 -71601021 - L1PA2 LINE L1 0 6155 5963 200 269 0 19 chr9 46262618 46262670 -71599957 - L2 LINE L2 -36 3236 3186 331 203 29 43 chr9 46263012 46263081 -71599546 - MIR SINE MIR -183 79 12 271 311 58 0 chr9 46263243 46263346 -71599281 - L2 LINE L2 0 3313 3205 564 279 10 67 chr9 46263350 46263558 -71599069 + L2 LINE L2 3118 3313 0 184 171 0 0 chr9 46263557 46263592 -71599035 - L2 LINE L2 -103 3210 3176 * 9992 205 44 34 chr9 46264044 46265811 -71596816 - L1MB8 LINE L1 -2 6176 4428 1008 98 0 0 chr9 46265811 46265943 -71596684 - FLAM_C SINE Alu -1 132 1 9992 205 44 34 chr9 46265943 46267498 -71595129 - L1MB8 LINE L1 -1750 4428 2808 1347 205 14 30 chr9 46267498 46267795 -71594832 - AluJo SINE Alu -20 292 1 9992 205 44 34 chr9 46267795 46268481 -71594146 - L1MB8 LINE L1 -3370 2808 2130 15598 161 74 7 chr9 46268481 46268731 -71593896 + Tigger3(Golem) DNA MER2_type 1 233 -2796 2084 96 35 3 chr9 46268731 46269013 -71593614 - AluSq SINE Alu -17 296 6 15598 161 74 7 chr9 46269013 46271599 -71591028 + Tigger3(Golem) DNA MER2_type 233 3027 -2 2405 163 51 71 chr9 46271639 46272204 -71590423 + MLT2B3 LTR ERVL 1 554 0 627 304 45 54 chr9 46272205 46272537 -71590090 - L1MEc LINE L1 -4191 2205 1877 2806 80 3 6 chr9 46272759 46273124 -71589503 - THE1B LTR MaLR 0 364 1 488 276 0 16 chr9 46273729 46273856 -71588771 - MIR SINE MIR -74 188 64 427 333 15 0 chr9 46274250 46274382 -71588245 + L2 LINE L2 3139 3272 0 1717 161 34 3 chr9 46274592 46275011 -71587616 - AluJb SINE Alu 0 428 1 349 364 87 0 chr9 46275785 46275958 -71586669 + MIR SINE MIR 62 249 -13 508 290 28 34 chr9 46276013 46276189 -71586438 - MIR SINE MIR -70 192 18 337 281 16 16 chr9 46278356 46278477 -71584150 - MIR SINE MIR -71 191 71 248 175 70 35 chr9 46279368 46279425 -71583202 + L2 LINE L2 3250 3308 -5 829 278 20 20 chr9 46280120 46280368 -71582259 + L2 LINE L2 3061 3308 -5 371 223 9 0 chr9 46280368 46280480 -71582147 + GA-rich Low_complexity Low_complexity 1 113 0 317 274 134 51 chr9 46280488 46280645 -71581982 - L2 LINE L2 -7 3265 3096 217 286 0 0 chr9 46282271 46282327 -71580300 + (CA)n Simple_repeat Simple_repeat 1 56 0 22 35 0 0 chr9 46282658 46282687 -71579940 + AT_rich Low_complexity Low_complexity 1 29 0 1123 158 12 0 chr9 46282796 46282967 -71579660 + FRAM SINE Alu 1 172 -4 2157 108 50 42 chr9 46283775 46284136 -71578491 + THE1B LTR MaLR 1 364 0 863 264 144 19 chr9 46284756 46285187 -71577440 - MLT1J LTR MaLR -9 502 18 415 306 171 10 chr9 46285198 46285391 -71577236 + MIR SINE MIR 4 227 -35 203 338 52 0 chr9 46285465 46285542 -71577085 + L2 LINE L2 3190 3270 -2 * 348 287 63 16 chr9 46285521 46285660 -71576967 + MIR SINE MIR 3 159 -67 1211 246 61 55 chr9 46285666 46286171 -71576456 + LTR33 LTR ERVL 12 519 -2 352 247 0 0 chr9 46286184 46286265 -71576362 + MIR SINE MIR 163 243 -19 257 86 0 0 chr9 46286419 46286454 -71576173 - U2 snRNA snRNA -153 35 1 302 299 36 66 chr9 46287849 46287986 -71574641 + L2 LINE L2 2904 3036 -236 560 309 88 6 chr9 46288029 46288210 -71574417 + MIR SINE MIR 42 237 -25 2079 127 0 10 chr9 46288596 46288903 -71573724 - AluSx SINE Alu -8 304 1 2944 213 36 8 chr9 46289242 46289876 -71572751 - MER82 DNA MER2_type 0 653 2 325 242 0 0 chr9 46290068 46290134 -71572493 + MIR SINE MIR 167 232 -30 946 240 158 49 chr9 46290148 46290743 -71571884 - HAL1 LINE L1 -1146 1361 702 2923 118 11 8 chr9 46290743 46291217 -71571410 - Tigger3b DNA MER2_type 0 1231 757 2334 136 60 5 chr9 46291212 46291609 -71571018 - MSTB LTR MaLR -7 419 1 * 3866 153 29 17 chr9 46291611 46292375 -71570252 - Tigger3b DNA MER2_type -457 774 2 280 235 20 31 chr9 46292378 46292476 -71570151 - HAL1 LINE L1 -1808 699 603 300 220 154 11 chr9 46292557 46292648 -71569979 - HAL1 LINE L1 -2027 480 377 430 194 48 159 chr9 46292668 46292895 -71569732 - HAL1 LINE L1 -2271 236 35 318 132 0 0 chr9 46295372 46295425 -71567202 + (TG)n Simple_repeat Simple_repeat 2 54 0 677 297 0 36 chr9 46295435 46295630 -71566997 + MIR3 SINE MIR 18 205 -3 2053 127 46 30 chr9 46296029 46296398 -71566229 + THE1C LTR MaLR 1 375 0 830 279 44 9 chr9 46296922 46297151 -71565476 - MIR SINE MIR -24 238 2 190 303 53 13 chr9 46297168 46297244 -71565383 + MIR SINE MIR 77 155 -107 2213 235 42 19 chr9 46297274 46297815 -71564812 - MLT2B3 LTR ERVL 0 554 1 852 283 129 23 chr9 46298578 46299065 -71563562 + MLT1G1 LTR MaLR 13 551 -44 3966 189 57 37 chr9 46299242 46299481 -71563146 + L1MA10 LINE L1 4983 5216 -1118 2001 122 0 14 chr9 46299481 46299767 -71562860 + AluSx SINE Alu 30 311 -1 3966 189 57 37 chr9 46299767 46300806 -71561821 + L1MA10 LINE L1 5216 6294 -40 220 286 48 24 chr9 46301257 46301341 -71561286 - L2 LINE L2 -1 3271 3186 496 311 55 26 chr9 46301392 46301665 -71560962 - MLT1J LTR MaLR 0 511 231 508 311 129 50 chr9 46301856 46302013 -71560614 - L2 LINE L2 -191 3081 2938 2229 98 3 0 chr9 46302013 46302308 -71560319 + AluSx SINE Alu 1 296 -16 508 311 129 50 chr9 46302308 46302801 -71559826 - L2 LINE L2 -334 2938 2382 218 265 53 80 chr9 46302865 46303016 -71559611 + L2 LINE L2 2614 2760 -554 574 279 91 29 chr9 46303019 46303227 -71559400 - MIR SINE MIR -15 247 27 302 98 0 20 chr9 46303227 46303278 -71559349 + MADE1 DNA Mariner 31 80 0 252 342 63 18 chr9 46303506 46303617 -71559010 - MIR SINE MIR -70 138 23 795 221 0 35 chr9 46303780 46303884 -71558743 + FRAM SINE Alu 1 98 -214 1228 249 48 39 chr9 46303884 46304321 -71558306 - LTR47B LTR ERVL 0 443 3 795 221 0 35 chr9 46304321 46304388 -71558239 + FRAM SINE Alu 98 166 -10 255 31 0 0 chr9 46304486 46304518 -71558109 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 265 59 0 0 chr9 46305477 46305511 -71557116 - LTR51 LTR ERV1 -637 34 1 10261 136 10 13 chr9 46305567 46307557 -71555070 - L1MA2 LINE L1 -1 6303 4307 1818 142 36 0 chr9 46307557 46307838 -71554789 - AluSx SINE Alu -18 294 4 10261 136 10 13 chr9 46307838 46308695 -71553932 - L1MA2 LINE L1 -1997 4307 3473 3080 66 104 0 chr9 46308695 46309135 -71553492 - LTR19A LTR ERV1 0 486 1 10261 136 10 13 chr9 46309135 46309756 -71552871 - L1MA2 LINE L1 -2831 3473 2851 573 176 92 0 chr9 46309847 46309966 -71552661 - AluJo/FRAM SINE Alu -19 293 164 1453 153 25 21 chr9 46309968 46310209 -71552418 - 7SLRNA srpRNA srpRNA -70 250 9 27 73 0 0 chr9 46310298 46310353 -71552274 + AT_rich Low_complexity Low_complexity 1 55 0 824 233 44 17 chr9 46310482 46310662 -71551965 - MER5A DNA MER1_type 0 189 5 301 257 64 64 chr9 46310737 46310877 -71551750 - L1MEd LINE L1 -5976 143 4 * 306 351 34 27 chr9 46310876 46311024 -71551603 - L1MEd LINE L1 -5638 481 333 325 298 70 58 chr9 46311101 46311272 -71551355 - L1MEd LINE L1 -5920 199 27 3866 187 8 16 chr9 46311469 46312200 -71550427 + MER44D DNA MER2_type 1 597 -8 339 316 102 11 chr9 46312892 46313079 -71549548 + L1ME LINE L1 4073 4276 -1870 340 209 202 16 chr9 46313303 46313432 -71549195 + MLT1H LTR MaLR 148 300 -249 28 29 0 0 chr9 46313856 46313891 -71548736 + AT_rich Low_complexity Low_complexity 1 35 0 355 268 50 73 chr9 46313925 46314104 -71548523 + L1ME LINE L1 5255 5429 -2379 2069 145 0 7 chr9 46314161 46314465 -71548162 + AluSx SINE Alu 1 302 -10 426 291 10 30 chr9 46314465 46314607 -71548020 + L1ME LINE L1 5617 5755 -366 992 213 125 114 chr9 46314607 46315326 -71547301 + LTR8A LTR ERV1 1 727 0 426 291 10 30 chr9 46315326 46315386 -71547241 + L1ME LINE L1 5755 5815 -306 23 0 0 0 chr9 46315758 46315781 -71546846 + AT_rich Low_complexity Low_complexity 1 23 0 578 144 18 18 chr9 46316930 46317041 -71545586 + ORSL DNA AcHobo 4 114 -161 904 85 0 35 chr9 46317109 46317250 -71545377 + L1PA15 LINE L1 6026 6161 -4 385 125 9 143 chr9 46317634 46317746 -71544881 - L1MB3 LINE L1 0 6180 6084 592 139 0 28 chr9 46317747 46317855 -71544772 + ORSL DNA AcHobo 165 269 -6 2040 176 138 103 chr9 46318094 46318889 -71543738 + LTR1B LTR ERV1 1 823 -3 245 274 0 0 chr9 46319132 46319183 -71543444 + polypyrimidine Low_complexity Low_complexity 3 53 0 339 193 0 0 chr9 46319970 46320053 -71542574 + GA-rich Low_complexity Low_complexity 2 84 0 515 244 154 32 chr9 46320055 46320276 -71542351 - MIR SINE MIR -6 256 9 1148 158 308 4 chr9 46320347 46320581 -71542046 + AluSx SINE Alu 1 305 -7 1599 166 146 9 chr9 46320597 46320903 -71541724 + MLT2C1 LTR ERVL 1 264 -133 315 0 0 0 chr9 46320903 46320938 -71541689 + (TC)n Simple_repeat Simple_repeat 2 36 0 243 0 0 0 chr9 46320937 46320964 -71541663 + (TG)n Simple_repeat Simple_repeat 2 28 0 * 1599 166 146 9 chr9 46320938 46321006 -71541621 + MLT2C1 LTR ERVL 264 397 0 31 44 0 0 chr9 46321167 46321212 -71541415 + AT_rich Low_complexity Low_complexity 1 45 0 955 184 0 0 chr9 46321375 46321527 -71541100 - AluSg/x SINE Alu -24 288 137 863 193 10 42 chr9 46322299 46322491 -71540136 + AluJo SINE Alu 127 312 0 254 301 14 62 chr9 46322520 46322666 -71539961 + 7SK RNA RNA 6 144 -49 257 335 21 64 chr9 46322969 46323157 -71539470 + L3 LINE CR1 644 823 -754 210 208 0 0 chr9 46323462 46323510 -71539117 + GA-rich Low_complexity Low_complexity 1 48 0 284 247 0 0 chr9 46324021 46324089 -71538538 - L1MC4 LINE L1 -13 8029 7728 679 214 80 5 chr9 46324100 46324287 -71538340 - L1MC4 LINE L1 -153 7889 7689 233 295 40 67 chr9 46324392 46324541 -71538086 + L2 LINE L2 2328 2472 -842 2419 166 69 2 chr9 46325090 46325553 -71537074 + MER68 LTR ERV1 1 494 -68 375 130 0 0 chr9 46325553 46325607 -71537020 + Tigger5 DNA MER2_type 1 54 -2269 383 171 23 34 chr9 46325616 46325704 -71536923 + Tigger5 DNA MER2_type 2237 2323 0 291 83 83 0 chr9 46325735 46325783 -71536844 + MER68 LTR ERV1 504 555 -7 6268 50 2 6 chr9 46326440 46326683 -71535944 - L1PA5 LINE L1 -6 6148 5906 213 119 0 0 chr9 46326683 46326725 -71535902 + (TTTTG)n Simple_repeat Simple_repeat 1 42 0 2356 54 0 0 chr9 46326725 46327005 -71535622 - AluY SINE Alu -31 280 1 6268 50 2 6 chr9 46327005 46327582 -71535045 - L1PA5 LINE L1 -246 5908 5330 537 56 0 0 chr9 46327579 46327650 -71534977 + L1P LINE L1 5206 5276 -870 * 358 313 46 56 chr9 46328832 46329027 -71533600 - MLT1K LTR MaLR -291 297 105 560 262 28 0 chr9 46329066 46329207 -71533420 - MER63A DNA MER1_type -4 206 62 1885 157 11 0 chr9 46329338 46329625 -71533002 - AluJb SINE Alu -22 290 1 1668 183 69 14 chr9 46329630 46330050 -71532577 - L1MB7 LINE L1 0 6184 5742 293 242 129 16 chr9 46330618 46330742 -71531885 + MIR SINE MIR 125 262 0 373 305 0 9 chr9 46332387 46332492 -71530135 - MIR3 SINE MIR -9 199 96 360 177 0 0 chr9 46332492 46332554 -71530073 - MLT1A2 LTR MaLR 0 390 329 467 218 0 10 chr9 46332557 46332658 -71529969 + MLT1A2 LTR MaLR 218 317 -57 573 257 28 55 chr9 46332698 46332916 -71529711 - MLT1A2 LTR MaLR -161 213 2 560 310 16 27 chr9 46334367 46334625 -71528002 + MER102b DNA MER1_type 37 291 -50 2478 149 92 10 chr9 46335411 46335901 -71526726 - L1MB8 LINE L1 -3 6175 5646 2124 156 63 37 chr9 46335901 46336427 -71526200 + MLT2A2 LTR ERVL 1 554 0 1084 154 6 0 chr9 46336430 46336612 -71526015 - L1MB8 LINE L1 -537 5647 5465 398 253 0 0 chr9 46337035 46337134 -71525493 - MER103 DNA DNA -65 101 3 191 237 0 0 chr9 46337247 46337285 -71525342 - L2 LINE L2 -12 3301 3264 3665 163 164 31 chr9 46338900 46339094 -71523533 + L1MC3 LINE L1 6752 6919 -866 195 100 0 0 chr9 46339094 46339124 -71523503 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 3665 163 164 31 chr9 46339124 46339739 -71522888 + L1MC3 LINE L1 6919 7697 -88 2745 116 19 9 chr9 46339739 46340162 -71522465 + MSTA LTR MaLR 1 427 -1 3665 163 164 31 chr9 46340162 46340257 -71522370 + L1MC3 LINE L1 7697 7778 -7 2070 108 0 46 chr9 46340547 46340872 -71521755 + AluSg SINE Alu 1 310 0 500 255 123 15 chr9 46340900 46341104 -71521523 + L1ME3A LINE L1 5940 6165 -5 2226 85 0 67 chr9 46341130 46341458 -71521169 + AluY SINE Alu 1 306 -5 196 316 256 11 chr9 46341882 46342541 -71520086 - L2 LINE L2 -339 2975 2155 411 243 103 0 chr9 46342830 46342937 -71519690 + L2 LINE L2 3196 3313 0 391 340 76 16 chr9 46343265 46343515 -71519112 + L1MC5 LINE L1 7249 7513 -448 294 264 132 8 chr9 46343610 46343852 -71518775 + L1ME4a LINE L1 5833 6104 -17 2363 131 94 23 chr9 46343964 46344398 -71518229 - MLT1C LTR MaLR 0 467 3 1811 151 7 7 chr9 46344513 46344805 -71517822 - AluSx SINE Alu -18 294 3 339 123 18 0 chr9 46344808 46344865 -71517762 - AluJb SINE Alu -166 136 79 346 296 19 9 chr9 46345566 46345674 -71516953 - MIR3 SINE MIR -8 200 92 210 225 0 0 chr9 46345770 46345810 -71516817 - L2 LINE L2 -10 3303 3264 198 103 0 0 chr9 46346389 46346418 -71516209 + (GA)n Simple_repeat Simple_repeat 2 30 0 592 186 264 0 chr9 46346465 46346605 -71516022 + MIR SINE MIR 62 238 -24 5130 74 24 5 chr9 46347070 46347811 -71514816 + MER4E LTR ERV1 1 755 -11 3882 272 77 21 chr9 46348483 46348610 -71514017 + L1M4b LINE L1 11 129 -6730 1929 90 0 4 chr9 46348610 46348903 -71513724 + AluY SINE Alu 26 317 0 2305 60 46 0 chr9 46348905 46349186 -71513441 + AluY SINE Alu 1 294 -17 3882 272 77 21 chr9 46349186 46350203 -71512424 + L1M4b LINE L1 129 1088 -5771 387 105 0 0 chr9 46350203 46350260 -71512367 + (TG)n Simple_repeat Simple_repeat 2 58 0 3882 272 77 21 chr9 46350260 46350372 -71512255 + L1M4b LINE L1 1088 1192 -5667 1783 185 105 10 chr9 46350372 46350761 -71511866 + MSTB LTR MaLR 1 426 0 3882 272 77 21 chr9 46350761 46350912 -71511715 + L1M4b LINE L1 1192 1505 -5354 1616 204 138 30 chr9 46350919 46351413 -71511214 - LTR10B LTR ERV1 0 547 1 32883 203 35 37 chr9 46351418 46359208 -71503419 - HERVI LTR ERV1 -2 7783 4 1531 193 77 58 chr9 46359208 46359701 -71502926 - LTR10B LTR ERV1 0 505 1 2190 248 35 37 chr9 46359703 46359822 -71502805 + L1M4b LINE L1 1510 1628 -5329 1530 208 21 7 chr9 46359822 46360110 -71502517 + AluJo SINE Alu 1 292 -20 2190 248 35 37 chr9 46360110 46360973 -71501654 + L1M4b LINE L1 1628 2532 -4425 288 265 0 0 chr9 46361173 46361241 -71501386 - MLT1K LTR MaLR -10 578 511 205 311 16 0 chr9 46362163 46362224 -71500403 - L2 LINE L2 -8 3264 3203 239 187 93 113 chr9 46362958 46363108 -71499519 - L1M4 LINE L1 -1449 4697 4551 608 307 39 44 chr9 46363148 46363581 -71499046 - L1M4 LINE L1 -1664 4482 4052 253 293 62 39 chr9 46364332 46364420 -71498207 - L1M4 LINE L1 -3583 2563 2479 2595 163 44 5 chr9 46364420 46364832 -71497795 - MSTA LTR MaLR 0 428 1 253 293 62 39 chr9 46364832 46364999 -71497628 - L1M4 LINE L1 -3667 2479 2302 2105 157 100 3 chr9 46365025 46365414 -71497213 - LTR51 LTR ERV1 0 671 245 334 202 11 11 chr9 46365984 46366078 -71496549 + (TATATG)n Simple_repeat Simple_repeat 3 96 0 406 259 69 8 chr9 46367072 46367203 -71495424 + MIR3 SINE MIR 39 177 -31 638 304 22 27 chr9 46367504 46367728 -71494899 - MIR SINE MIR -4 258 36 1223 193 96 0 chr9 46367793 46368011 -71494616 - MER8 DNA MER2_type 0 239 1 1580 209 0 25 chr9 46368015 46368335 -71494292 - AluJo SINE Alu 0 312 1 220 280 37 85 chr9 46368343 46368532 -71494095 + L2 LINE L2 2337 2516 -798 427 256 61 24 chr9 46368569 46368721 -71493906 - LTR33 LTR ERVL -8 513 356 1729 178 48 28 chr9 46368721 46369075 -71493552 + MLT1C LTR MaLR 3 363 -104 1021 163 12 0 chr9 46369082 46369248 -71493379 - FRAM SINE Alu -8 168 1 380 67 0 0 chr9 46369289 46369334 -71493293 + MLT1C LTR MaLR 346 390 0 1122 212 18 82 chr9 46369473 46369921 -71492706 - L1MC5 LINE L1 -858 7103 6718 1421 206 5 65 chr9 46370195 46370563 -71492064 + MLT1A2 LTR MaLR 1 346 -28 1372 153 13 4 chr9 46370572 46370808 -71491819 - L1MB3 LINE L1 -3 6180 5943 2631 179 21 46 chr9 46370876 46370916 -71491711 - MLT2B1 LTR ERVL 0 520 481 717 79 0 0 chr9 46370916 46371017 -71491610 + (TCTA)n Simple_repeat Simple_repeat 1 101 0 2631 179 21 46 chr9 46371017 46371502 -71491125 - MLT2B1 LTR ERVL -39 481 8 549 223 16 1 chr9 46371911 46372040 -71490587 - LTR49 LTR ERV1 0 595 484 847 199 18 18 chr9 46372042 46372208 -71490419 - LTR49-int LTR ERV1 -2812 3519 3354 9805 171 26 53 chr9 46372238 46374294 -71488333 - LTR49-int LTR ERV1 -2960 3371 1372 508 155 29 10 chr9 46374426 46374529 -71488098 - LTR49-int LTR ERV1 -4939 1392 1288 424 225 0 0 chr9 46374577 46374648 -71487979 - tRNA-Glu-GAG tRNA tRNA 0 75 5 1948 156 7 7 chr9 46375377 46375685 -71486942 - AluJb SINE Alu -4 308 1 2645 168 62 36 chr9 46376978 46377241 -71485386 - MER34C LTR ERV1 -3 582 328 1494 106 65 5 chr9 46377241 46377458 -71485169 - MER30 DNA MER1_type 0 230 1 2645 168 62 36 chr9 46377458 46377698 -71484929 - MER34C LTR ERV1 -257 328 60 2112 225 35 113 chr9 46377698 46378350 -71484277 + LTR8 LTR ERV1 1 588 -103 2335 110 0 0 chr9 46378350 46378659 -71483968 - AluSx SINE Alu -3 309 1 2112 225 35 113 chr9 46378659 46378756 -71483871 + LTR8 LTR ERV1 588 691 0 2645 168 62 36 chr9 46378756 46378811 -71483816 - MER34C LTR ERV1 -525 60 8 214 301 146 75 chr9 46378933 46379036 -71483591 - MIR SINE MIR -3 259 165 2229 122 0 10 chr9 46379036 46379347 -71483280 - AluSx SINE Alu -4 308 1 214 301 146 75 chr9 46379347 46379442 -71483185 - MIR SINE MIR -97 165 47 1380 147 28 8 chr9 46379498 46379938 -71482689 - LTR54 LTR ERV1 0 510 1 831 226 5 21 chr9 46379942 46380132 -71482495 - LTR8 LTR ERV1 0 691 505 1557 152 8 16 chr9 46380132 46380389 -71482238 - MER57A LTR ERV1 -148 255 1 1255 160 22 13 chr9 46380389 46380620 -71482007 - MER57A-int LTR ERV1 0 7537 7305 516 153 145 24 chr9 46380620 46380744 -71481883 - LTR54B LTR ERV1 -357 141 3 2353 151 66 8 chr9 46380744 46381196 -71481431 - MER57A-int LTR ERV1 -391 7146 6592 1058 188 112 29 chr9 46381219 46381557 -71481070 + MSTD LTR MaLR 1 396 0 953 282 132 5 chr9 46381567 46382063 -71480564 - L2 LINE L2 0 3313 2682 354 306 27 0 chr9 46382083 46382194 -71480433 + MIR SINE MIR 79 192 -70 400 104 73 0 chr9 46382549 46382645 -71479982 + GA-rich Low_complexity Low_complexity 4 106 0 468 257 95 14 chr9 46382909 46383057 -71479570 - MIR SINE MIR -85 177 18 2227 121 3 6 chr9 46383179 46383492 -71479135 - AluSx SINE Alu 0 312 1 1125 187 197 20 chr9 46384565 46384870 -71477757 + MLT1A1 LTR MaLR 1 359 -6 3585 124 40 6 chr9 46384899 46385445 -71477182 - MER34B LTR ERV1 0 565 1 2000 184 76 40 chr9 46386871 46386913 -71475714 - MLT1D LTR MaLR -13 492 453 2135 101 22 0 chr9 46386913 46387227 -71475400 - AluSg SINE Alu 0 320 1 790 200 0 22 chr9 46387230 46387365 -71475262 - FLAM_A SINE Alu -1 132 1 2000 184 76 40 chr9 46387365 46387790 -71474837 - MLT1D LTR MaLR -53 452 3 1700 160 7 18 chr9 46388710 46388992 -71473635 + AluJo SINE Alu 29 307 -5 842 292 98 49 chr9 46389190 46389258 -71473369 - L2 LINE L2 -86 3227 3164 2306 106 0 6 chr9 46389258 46389570 -71473057 + AluSx SINE Alu 1 310 -2 842 292 98 49 chr9 46389570 46389933 -71472694 - L2 LINE L2 -149 3164 2779 1792 180 55 14 chr9 46390223 46390568 -71472059 - MLT1A1 LTR MaLR -3 362 4 2201 124 0 3 chr9 46391283 46391582 -71471045 - AluSx SINE Alu -14 298 1 531 0 0 0 chr9 46392568 46392627 -71470000 + (GAAA)n Simple_repeat Simple_repeat 1 59 0 2255 186 34 22 chr9 46392631 46393276 -71469351 + L1M4 LINE L1 5143 5797 -377 554 122 12 0 chr9 46393276 46393358 -71469269 - L1M4 LINE L1 -529 5655 5573 2334 95 0 3 chr9 46393491 46393795 -71468832 - AluSq SINE Alu -4 309 7 393 316 53 53 chr9 46393812 46393983 -71468644 - L2 LINE L2 -5 3267 3097 2101 117 3 25 chr9 46394115 46394432 -71468195 - AluSq SINE Alu -2 311 2 315 300 75 44 chr9 46394512 46394672 -71467955 + MIR3 SINE MIR 22 186 -22 659 332 64 27 chr9 46395742 46396117 -71466510 - MLT1K LTR MaLR -94 521 103 21 0 0 0 chr9 46396630 46396651 -71465976 + AT_rich Low_complexity Low_complexity 1 21 0 2410 87 6 0 chr9 46396845 46397156 -71465471 + AluSp SINE Alu 1 313 0 566 87 0 0 chr9 46397311 46397380 -71465247 - AluJb SINE Alu -182 130 62 449 329 146 50 chr9 46397460 46398166 -71464461 + L3 LINE CR1 230 1003 -574 868 221 20 79 chr9 46398582 46398776 -71463851 + MIR SINE MIR 14 192 -70 2191 109 3 0 chr9 46398776 46399090 -71463537 + AluSp SINE Alu 1 315 0 868 221 20 79 chr9 46399090 46399148 -71463479 + MIR SINE MIR 192 252 -10 197 343 46 28 chr9 46399436 46399544 -71463083 + L2 LINE L2 3127 3236 -36 203 270 67 11 chr9 46403025 46403114 -71459513 - MIR SINE MIR -64 144 51 314 340 60 16 chr9 46403133 46403318 -71459309 + MIR SINE MIR 20 212 -50 1630 262 53 6 chr9 46403522 46403992 -71458635 + LTR33 LTR ERVL 20 511 -10 211 125 0 0 chr9 46404008 46404040 -71458587 - MIR SINE MIR -108 154 123 197 286 0 43 chr9 46404533 46404603 -71458024 - MIR3 SINE MIR -5 203 137 687 200 0 9 chr9 46404704 46404819 -71457808 - FLAM_A SINE Alu -16 117 4 283 329 0 0 chr9 46404922 46404998 -71457629 - MIR3 SINE MIR -46 162 87 1041 271 46 27 chr9 46405014 46405343 -71457284 - MLT1I LTR MaLR -8 401 67 2142 113 0 0 chr9 46405403 46405686 -71456941 - AluSx SINE Alu -8 304 22 279 0 0 0 chr9 46406264 46406295 -71456332 + (TG)n Simple_repeat Simple_repeat 2 32 0 688 312 5 18 chr9 46406314 46406535 -71456092 + MIR SINE MIR 2 219 -43 485 329 74 16 chr9 46406597 46406840 -71455787 + MIR SINE MIR 3 259 -3 189 300 106 81 chr9 46406889 46407049 -71455578 - L2 LINE L2 -95 3177 3014 227 208 125 14 chr9 46408395 46408467 -71454160 + MLT1K LTR MaLR 509 588 0 3258 144 12 8 chr9 46408606 46409121 -71453506 + L1MB2 LINE L1 5653 6169 -2 221 292 0 69 chr9 46409290 46409362 -71453265 - L2 LINE L2 -18 3254 3188 456 234 52 13 chr9 46409670 46409824 -71452803 - MER103 DNA DNA 0 166 7 1291 256 29 29 chr9 46410115 46410463 -71452164 - LTR16C LTR ERVL -15 476 129 242 257 0 81 chr9 46411089 46411163 -71451464 - L2 LINE L2 0 3313 3246 563 265 131 57 chr9 46411176 46411400 -71451227 + MIR SINE MIR 3 236 -26 196 231 0 0 chr9 46411780 46411819 -71450808 - L2 LINE L2 0 3272 3234 185 397 0 0 chr9 46411842 46411915 -71450712 - L2 LINE L2 -2 3311 3239 3082 129 26 2 chr9 46411916 46412381 -71450246 + L1PB3 LINE L1 5679 6154 0 679 328 112 26 chr9 46413921 46414416 -71448211 + L2 LINE L2 2716 3269 -3 201 323 0 0 chr9 46414592 46414657 -71447970 - MIR SINE MIR -116 146 82 397 311 115 16 chr9 46414854 46415037 -71447590 + MIR3 SINE MIR 1 201 -7 2362 161 6 8 chr9 46415811 46416177 -71446450 + MLT1A1 LTR MaLR 1 365 0 2504 183 21 7 chr9 46416415 46416835 -71445792 + MSTB LTR MaLR 1 426 0 431 273 91 8 chr9 46417174 46417306 -71445321 - MIR3 SINE MIR -2 206 64 212 306 54 54 chr9 46417310 46417421 -71445206 - MIR3 SINE MIR -95 113 3 202 256 0 0 chr9 46417482 46417521 -71445106 + L3 LINE CR1 1537 1575 -2 192 77 0 0 chr9 46417592 46417618 -71445009 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 23 0 0 0 chr9 46418137 46418160 -71444467 + AT_rich Low_complexity Low_complexity 1 23 0 302 277 48 0 chr9 46418461 46418544 -71444083 - MIR3 SINE MIR -4 204 118 425 281 99 93 chr9 46419140 46419485 -71443142 - L2 LINE L2 -8 3264 2918 1167 232 121 24 chr9 46419622 46419954 -71442673 + LTR16A LTR ERVL 52 415 -35 274 258 124 0 chr9 46420331 46420420 -71442207 + MER5A DNA MER1_type 7 106 -83 413 278 26 33 chr9 46421186 46421337 -71441290 - L1ME2 LINE L1 -103 6061 5912 789 276 48 14 chr9 46421352 46421704 -71440923 - L1MEc LINE L1 -4768 1628 1265 540 240 32 0 chr9 46421821 46421946 -71440681 + MER94 DNA DNA 1 129 -5 5509 166 36 20 chr9 46422139 46423241 -71439386 - L1MC2 LINE L1 0 6344 5225 1375 289 40 24 chr9 46423363 46423989 -71438638 - L1MEc LINE L1 -5135 1261 626 674 267 47 73 chr9 46424100 46424400 -71438227 - L1MEc LINE L1 -6066 330 39 3556 224 46 42 chr9 46424496 46425173 -71437454 + Zaphod DNA AcHobo 14 698 -3333 2018 101 0 0 chr9 46425173 46425430 -71437197 - AluSq SINE Alu -17 296 40 3556 224 46 42 chr9 46425430 46425810 -71436817 + Zaphod DNA AcHobo 698 1075 -2956 630 261 6 12 chr9 46425815 46425976 -71436651 + Zaphod DNA AcHobo 3872 4031 0 197 268 89 0 chr9 46426968 46427020 -71435607 + L2 LINE L2 3205 3261 -52 631 218 61 42 chr9 46427020 46427185 -71435442 + MER5B DNA MER1_type 1 168 -10 889 148 8 0 chr9 46427311 46427439 -71435188 + FLAM_C SINE Alu 3 131 -2 680 20 41 0 chr9 46428345 46428443 -71434184 + (TAGA)n Simple_repeat Simple_repeat 4 105 0 357 224 169 8 chr9 46428863 46428980 -71433647 - MIR3 SINE MIR -15 193 56 9439 98 16 18 chr9 46429508 46430623 -71432004 + HSMAR2 DNA Mariner 1 1114 -188 2209 115 0 0 chr9 46430623 46430911 -71431716 + AluSg SINE Alu 1 288 -22 9439 98 16 18 chr9 46430911 46431099 -71431528 + HSMAR2 DNA Mariner 1114 1301 -1 225 83 0 0 chr9 46431345 46431381 -71431246 + (T)n Simple_repeat Simple_repeat 1 36 0 376 326 45 45 chr9 46431398 46431576 -71431051 + MIR3 SINE MIR 31 208 0 328 273 55 62 chr9 46432402 46432530 -71430097 - MIR3 SINE MIR -49 159 33 231 111 28 0 chr9 46432780 46432816 -71429811 - Charlie8 DNA MER1_type -992 1425 1389 2012 154 0 0 chr9 46433250 46433549 -71429078 - AluSx SINE Alu -13 299 1 2379 85 16 0 chr9 46434446 46434624 -71428003 - AluY SINE Alu 0 311 124 189 0 0 0 chr9 46434624 46434645 -71427982 + (TTA)n Simple_repeat Simple_repeat 2 22 0 2379 85 16 0 chr9 46434645 46434772 -71427855 - AluY SINE Alu -187 124 1 202 315 19 0 chr9 46434777 46434831 -71427796 + MIR SINE MIR 86 140 -68 2010 124 3 17 chr9 46434895 46435185 -71427442 - AluSx SINE Alu -26 286 1 346 217 189 35 chr9 46435459 46435602 -71427025 + MIR SINE MIR 47 211 -51 1380 211 98 42 chr9 46435668 46436140 -71426487 + MER39 LTR ERV1 1 707 0 270 81 0 0 chr9 46436356 46436393 -71426234 + (TG)n Simple_repeat Simple_repeat 2 38 0 2148 118 0 3 chr9 46437353 46437649 -71424978 - AluSq SINE Alu -17 296 2 579 101 0 0 chr9 46437685 46437764 -71424863 + MADE1 DNA Mariner 2 80 0 203 308 55 0 chr9 46437918 46438009 -71424618 + L2 LINE L2 3133 3228 -44 585 215 16 0 chr9 46438043 46438164 -71424463 - MIR SINE MIR -31 231 109 4575 168 26 7 chr9 46439477 46440417 -71422210 - L1PBa LINE L1 -4666 2197 1096 1110 190 68 5 chr9 46440424 46440645 -71421982 - L1PBa LINE L1 -5912 951 717 657 233 188 15 chr9 46441020 46441222 -71421405 - MIR SINE MIR -8 254 18 251 273 98 58 chr9 46442670 46442824 -71419803 - MIR SINE MIR -79 129 19 2163 108 7 0 chr9 46442971 46443266 -71419361 - AluSx SINE Alu 0 312 16 3673 171 55 21 chr9 46443635 46444022 -71418605 - L1MB4 LINE L1 0 6180 5808 2977 174 37 18 chr9 46444022 46444532 -71418095 - MLT2B1 LTR ERVL 0 520 1 3673 171 55 21 chr9 46444532 46444644 -71417983 - L1MB4 LINE L1 -372 5808 5701 2544 123 47 3 chr9 46444644 46445003 -71417624 - THE1C LTR MaLR 0 375 1 10596 108 39 47 chr9 46445003 46446596 -71416031 - THE1C-int LTR MaLR 0 1580 1 2916 97 11 3 chr9 46446596 46446968 -71415659 - THE1C LTR MaLR 0 375 1 3673 171 55 21 chr9 46446968 46447178 -71415449 - L1MB4 LINE L1 -478 5702 5444 449 353 13 0 chr9 46447244 46447397 -71415230 + LTR67 LTR ERVL 36 190 -367 2399 107 0 0 chr9 46448062 46448370 -71414257 - AluSx SINE Alu -4 308 1 1255 169 32 28 chr9 46449353 46449602 -71413025 - THE1C LTR MaLR -1 374 125 4047 137 21 52 chr9 46449604 46450377 -71412250 - L1 LINE L1 -834 5312 4564 319 224 26 0 chr9 46450377 46450453 -71412174 - HAL1 LINE L1 -304 2203 2126 2419 228 87 147 chr9 46450457 46451024 -71411603 - HAL1 LINE L1 -1028 1479 880 2028 146 10 0 chr9 46451024 46451332 -71411295 - AluSx SINE Alu -1 311 1 2419 228 87 147 chr9 46451332 46452333 -71410294 - HAL1 LINE L1 -1627 880 4 1999 120 7 0 chr9 46453258 46453534 -71409093 + AluSx SINE Alu 5 282 -30 195 42 0 0 chr9 46453540 46453564 -71409063 + (TGAA)n Simple_repeat Simple_repeat 3 26 0 1051 246 16 4 chr9 46453738 46453982 -71408645 - MIR SINE MIR -2 260 14 268 306 41 31 chr9 46454095 46454193 -71408434 - MER5B DNA MER1_type 0 178 80 191 336 63 42 chr9 46455626 46455769 -71406858 - L2 LINE L2 -5 3267 3122 1522 204 116 9 chr9 46455789 46456117 -71406510 + MLT1A1 LTR MaLR 3 365 0 850 141 87 49 chr9 46456201 46456385 -71406242 - MLT1C LTR MaLR 0 467 277 229 274 195 9 chr9 46456476 46456589 -71406038 + MIR SINE MIR 6 140 -68 1961 75 38 72 chr9 46457428 46457747 -71404880 + AluY SINE Alu 1 308 -3 1098 100 0 0 chr9 46458321 46458591 -71404036 + (GAATG)n Satellite Satellite 1 270 0 916 99 6 6 chr9 46458616 46458777 -71403850 + (GAATG)n Satellite Satellite 5 165 0 240 277 0 0 chr9 46458777 46458842 -71403785 + Charlie8 DNA MER1_type 90 154 -2263 423 207 46 0 chr9 46459063 46459150 -71403477 + L2 LINE L2 3172 3262 -10 677 250 66 10 chr9 46459647 46459843 -71402784 + MIR SINE MIR 8 214 -48 1217 218 210 16 chr9 46459865 46460288 -71402339 - MLT1D LTR MaLR 0 505 1 1169 299 59 0 chr9 46460579 46460983 -71401644 + LTR16A LTR ERVL 18 445 -5 511 294 190 9 chr9 46461438 46461649 -71400978 + MIR SINE MIR 12 260 -2 2339 287 78 19 chr9 46461840 46462036 -71400591 - L2 LINE L2 -278 3035 2852 2074 133 27 0 chr9 46462036 46462337 -71400290 + AluSc SINE Alu 1 309 0 2339 287 78 19 chr9 46462337 46463122 -71399505 - L2 LINE L2 -461 2852 2008 570 217 163 24 chr9 46463168 46463334 -71399293 + MER5A DNA MER1_type 1 189 0 248 77 26 0 chr9 46463377 46463416 -71399211 + (GGA)n Simple_repeat Simple_repeat 3 42 0 180 245 108 93 chr9 46465137 46465276 -71397351 + MIR3 SINE MIR 66 206 -2 282 325 110 7 chr9 46465802 46465956 -71396671 - MIR SINE MIR -24 238 69 1023 92 123 0 chr9 46466251 46466414 -71396213 - MER5A DNA MER1_type -6 183 1 396 222 12 0 chr9 46466495 46466576 -71396051 - MER96 DNA MER1_type? -93 82 1 3955 57 4 0 chr9 46467323 46467801 -71394826 - L1PA8 LINE L1 -3 6169 5690 1952 124 0 72 chr9 46468401 46468732 -71393895 - AluSx SINE Alu -5 307 1 390 178 0 14 chr9 46470347 46470420 -71392207 + L2 LINE L2 3241 3312 -1 867 253 21 0 chr9 46470530 46470724 -71391903 + MIR SINE MIR 8 205 -57 572 14 28 0 chr9 46472011 46472083 -71390544 + (TAGA)n Simple_repeat Simple_repeat 1 74 0 370 267 43 128 chr9 46472098 46472285 -71390342 - MER5B DNA MER1_type -1 177 7 278 278 20 119 chr9 46473519 46473670 -71388957 - L2 LINE L2 0 3272 3137 776 317 108 36 chr9 46473913 46474581 -71388046 - L2 LINE L2 -620 2694 1979 704 190 0 36 chr9 46475068 46475205 -71387422 + FLAM_C SINE Alu 1 132 -1 553 241 97 37 chr9 46475382 46475598 -71387029 - MIR SINE MIR -21 241 13 3564 137 23 4 chr9 46476805 46477322 -71385305 + MER1A DNA MER1_type 1 527 0 585 318 99 0 chr9 46478280 46478503 -71384124 - MIR SINE MIR -10 252 8 333 291 40 13 chr9 46478582 46478733 -71383894 - MIR SINE MIR 0 262 108 234 244 178 11 chr9 46479437 46479527 -71383100 - MIR SINE MIR -70 192 88 330 308 128 19 chr9 46480269 46480425 -71382202 + L2 LINE L2 3100 3272 0 243 61 0 0 chr9 46480854 46480887 -71381740 + (GA)n Simple_repeat Simple_repeat 2 34 0 339 283 26 84 chr9 46481358 46481521 -71381106 - MIR SINE MIR -58 150 34 941 132 23 17 chr9 46481697 46481871 -71380756 + MER96B DNA MER1_type? 1 175 -242 474 315 125 30 chr9 46482997 46483133 -71379494 - L2 LINE L2 -1 3312 3190 1919 125 11 0 chr9 46483133 46483405 -71379222 + AluSx SINE Alu 25 299 -13 474 315 125 30 chr9 46483405 46483563 -71379064 - L2 LINE L2 -123 3190 2990 252 330 68 11 chr9 46483574 46483662 -71378965 + L2 LINE L2 3180 3272 0 423 282 75 52 chr9 46483839 46484052 -71378575 - MIR SINE MIR -25 237 20 26 64 0 0 chr9 46484241 46484288 -71378339 + AT_rich Low_complexity Low_complexity 1 47 0 1725 119 36 0 chr9 46484310 46484562 -71378065 - L1PB1 LINE L1 -3 6148 5888 195 125 0 0 chr9 46484702 46484742 -71377885 + (TG)n Simple_repeat Simple_repeat 2 41 0 401 260 24 16 chr9 46484853 46484976 -71377651 - MIR3 SINE MIR -8 200 77 192 77 0 0 chr9 46485044 46485070 -71377557 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 1017 281 121 15 chr9 46486060 46486716 -71375911 - L2 LINE L2 0 3313 2571 234 303 0 5 chr9 46486716 46486831 -71375796 + MER91A DNA MER1_type 1 164 -32 299 279 0 13 chr9 46486920 46486999 -71375628 - L2 LINE L2 -738 2576 2499 1243 298 80 5 chr9 46487074 46487487 -71375140 - LTR16A LTR ERVL 0 450 7 197 324 63 45 chr9 46488061 46488172 -71374455 + MIR SINE MIR 79 191 -71 2138 94 19 39 chr9 46488569 46488878 -71373749 + AluSx SINE Alu 1 303 -9 21 36 0 0 chr9 46489439 46489467 -71373160 + AT_rich Low_complexity Low_complexity 1 28 0 185 311 0 0 chr9 46490695 46490740 -71371887 + L2 LINE L2 3225 3269 -3 22 0 0 0 chr9 46491897 46491919 -71370708 + AT_rich Low_complexity Low_complexity 1 22 0 512 201 110 65 chr9 46492668 46492822 -71369805 - MIR SINE MIR -67 195 35 2168 99 24 0 chr9 46492980 46493272 -71369355 - AluSx SINE Alu -13 299 1 263 268 14 14 chr9 46494083 46494154 -71368473 - Charlie4 DNA MER1_type -6 1955 1885 302 310 47 16 chr9 46494264 46494393 -71368234 - MLT1J LTR MaLR -150 361 229 386 195 26 0 chr9 46494490 46494567 -71368060 + MER45C DNA AcHobo 94 172 -781 1416 296 71 7 chr9 46494574 46495036 -71367591 + MER45C DNA AcHobo 462 953 0 653 203 29 14 chr9 46495053 46495191 -71367436 - MLT1J LTR MaLR -371 140 1 524 301 97 5 chr9 46495201 46495397 -71367230 - MIR SINE MIR -36 226 13 329 375 7 13 chr9 46495488 46495640 -71366987 + MER5A DNA MER1_type 18 168 -21 988 312 55 13 chr9 46495703 46496088 -71366539 + L1MC4a LINE L1 5501 5901 -1907 2000 156 0 0 chr9 46496280 46496575 -71366052 + AluSg SINE Alu 1 295 -15 988 216 5 19 chr9 46497511 46497719 -71364908 + MER3 DNA MER1_type 1 205 -4 2157 187 49 7 chr9 46498489 46498916 -71363711 - LTR56 LTR ERV1 0 445 1 284 259 82 0 chr9 46500534 46500647 -71361980 - L1MC/D LINE L1 -297 5824 5720 222 143 0 71 chr9 46501118 46501160 -71361467 + L2 LINE L2 3224 3262 -10 428 157 0 14 chr9 46502339 46502409 -71360218 + AluJo SINE Alu 66 134 -178 231 114 0 0 chr9 46503841 46503876 -71358751 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 472 195 11 0 chr9 46504520 46504607 -71358020 + L2 LINE L2 3225 3312 -1 26 0 0 0 chr9 46505988 46506014 -71356613 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr9 46506391 46506415 -71356212 + AT_rich Low_complexity Low_complexity 1 24 0 393 254 99 21 chr9 46507159 46507301 -71355326 - MIR3 SINE MIR -53 155 3 1648 262 60 44 chr9 46507367 46507936 -71354691 - MLT1K LTR MaLR 0 588 11 275 343 57 0 chr9 46508571 46508676 -71353951 + MIR3 SINE MIR 44 154 -54 271 231 15 0 chr9 46508707 46508772 -71353855 - MER113 DNA MER1_type? -1 520 455 395 225 39 23 chr9 46508881 46509010 -71353617 - MER113 DNA MER1_type? -386 135 5 539 328 42 12 chr9 46509091 46509332 -71353295 - MIR SINE MIR -14 248 1 239 321 37 18 chr9 46509918 46510027 -71352600 + MIR SINE MIR 151 261 -1 1606 283 59 43 chr9 46510204 46510286 -71352341 + L1MC4a LINE L1 5255 5334 -2474 216 0 0 0 chr9 46510286 46510310 -71352317 + (CA)n Simple_repeat Simple_repeat 1 24 0 1606 283 59 43 chr9 46510310 46510351 -71352276 + L1MC4a LINE L1 5334 5373 -2435 1852 164 0 35 chr9 46510351 46510662 -71351965 + AluJo SINE Alu 3 302 -10 1606 283 59 43 chr9 46510662 46511279 -71351348 + L1MC4a LINE L1 5373 6008 -1800 436 214 48 24 chr9 46511640 46511766 -71350861 + MER53 DNA DNA 27 155 -34 235 281 0 37 chr9 46511803 46511885 -71350742 + MIR SINE MIR 109 187 -75 290 310 103 9 chr9 46512209 46512325 -71350302 - L2 LINE L2 -1 3312 3186 272 255 135 13 chr9 46512370 46512485 -71350142 + MER5B DNA MER1_type 2 178 0 239 289 44 11 chr9 46513190 46513280 -71349347 - L1MC4 LINE L1 -1341 6701 6609 2116 126 0 23 chr9 46513578 46513887 -71348740 - AluSx SINE Alu -10 302 1 302 191 0 0 chr9 46515065 46515112 -71347515 + MER91 DNA MER1_type 1 47 -93 200 143 48 48 chr9 46515078 46515120 -71347507 - MER91 DNA MER1_type -143 47 6 * 818 305 134 40 chr9 46515154 46515888 -71346739 - L2 LINE L2 -250 3022 2196 361 233 82 38 chr9 46515892 46516051 -71346576 - MLT1J LTR MaLR -4 507 342 21 0 0 0 chr9 46516156 46516177 -71346450 + AT_rich Low_complexity Low_complexity 1 21 0 1616 174 31 3 chr9 46516178 46516466 -71346161 - AluJb SINE Alu -11 301 6 296 258 0 0 chr9 46516470 46516532 -71346095 + MER81 DNA DNA 53 114 0 598 248 63 80 chr9 46516534 46516836 -71345791 - MLT1J LTR MaLR -200 311 15 304 300 163 21 chr9 46518904 46519094 -71343533 + MIR SINE MIR 46 262 0 23 33 0 0 chr9 46519150 46519180 -71343447 + AT_rich Low_complexity Low_complexity 1 30 0 2240 86 0 0 chr9 46519846 46520124 -71342503 + AluSx SINE Alu 1 278 -34 411 21 0 0 chr9 46520130 46520178 -71342449 + (GA)n Simple_repeat Simple_repeat 2 49 0 568 293 103 4 chr9 46520299 46520531 -71342096 - MIR SINE MIR -7 255 1 559 170 90 0 chr9 46521133 46521233 -71341394 + Tigger3(Golem) DNA MER2_type 2 110 -2919 * 4120 126 52 25 chr9 46521222 46521954 -71340673 + Tigger3(Golem) DNA MER2_type 2278 3029 0 947 180 58 15 chr9 46523183 46523389 -71339238 + L1MB7 LINE L1 5 219 -6323 5036 162 28 19 chr9 46523391 46523853 -71338774 + L1MB7 LINE L1 5135 5591 -1091 2063 113 3 13 chr9 46523853 46524153 -71338474 + AluSx SINE Alu 1 297 -15 5036 162 28 19 chr9 46524153 46525106 -71337521 + L1MB7 LINE L1 5591 6662 -20 550 203 39 23 chr9 46525405 46525533 -71337094 + MER117 DNA MER1_type 1 130 -67 562 233 111 41 chr9 46526161 46526333 -71336294 + MER5A DNA MER1_type 1 184 -5 184 219 0 0 chr9 46526739 46526771 -71335856 + MIR SINE MIR 195 226 -36 267 148 30 40 chr9 46527480 46527581 -71335046 + GA-rich Low_complexity Low_complexity 3 102 0 557 238 66 13 chr9 46528075 46528226 -71334401 - MER102b DNA MER1_type -50 291 133 268 233 55 27 chr9 46531342 46531415 -71331212 + MIR SINE MIR 109 183 -79 572 227 61 0 chr9 46531583 46531715 -71330912 + MIR SINE MIR 92 231 -31 975 272 151 36 chr9 46531866 46532311 -71330316 - LTR33 LTR ERVL -3 518 23 498 291 122 11 chr9 46532755 46532944 -71329683 - MIR SINE MIR 0 262 53 986 242 83 58 chr9 46534351 46534678 -71327949 - MER102b DNA MER1_type -3 338 4 207 359 41 32 chr9 46535156 46535376 -71327251 - L2 LINE L2 -453 2861 2640 2068 100 0 4 chr9 46535509 46535778 -71326849 - AluSx SINE Alu -13 299 32 396 353 41 6 chr9 46536560 46536730 -71325897 + MIR3 SINE MIR 19 194 -14 218 217 33 17 chr9 46537023 46537083 -71325544 + CT-rich Low_complexity Low_complexity 5 65 0 3036 65 46 0 chr9 46537398 46537770 -71324857 + L1PA7 LINE L1 5763 6151 -3 471 202 0 76 chr9 46537900 46538019 -71324608 + MER103 DNA DNA 8 117 -49 459 0 0 0 chr9 46538451 46538502 -71324125 + (CA)n Simple_repeat Simple_repeat 2 52 0 569 177 112 125 chr9 46542741 46542973 -71319654 - ORSL DNA AcHobo -20 255 27 347 309 16 0 chr9 46543076 46543202 -71319425 - LTR16B LTR ERVL -303 161 34 218 262 164 8 chr9 46543453 46543575 -71319052 + L3 LINE CR1 1437 1577 0 271 279 38 0 chr9 46543613 46543692 -71318935 + Charlie8 DNA MER1_type 1 82 -2335 2539 157 33 11 chr9 46543703 46544155 -71318472 + MLT1C LTR MaLR 1 462 -5 383 259 54 41 chr9 46544304 46544451 -71318176 - Charlie8 DNA MER1_type -2183 234 86 1921 160 3 16 chr9 46544851 46545164 -71317463 - AluJo SINE Alu -3 309 1 650 296 36 1 chr9 46545390 46545623 -71317004 - MIR SINE MIR -15 247 9 329 250 167 0 chr9 46545956 46546064 -71316563 + L1ME3A LINE L1 6039 6164 -6 316 185 15 111 chr9 46546104 46546239 -71316388 - L1MC5 LINE L1 -81 7880 7759 224 245 11 96 chr9 46547344 46547438 -71315189 - MIR SINE MIR -112 150 65 335 294 105 28 chr9 46548632 46548775 -71313852 - MIR3 SINE MIR -3 205 52 2024 150 0 0 chr9 46548823 46549110 -71313517 - AluJb SINE Alu -25 287 1 628 294 71 33 chr9 46549129 46549268 -71313359 - MIR SINE MIR -10 252 101 2371 108 50 44 chr9 46549268 46549630 -71312997 + THE1B LTR MaLR 1 364 0 628 294 71 33 chr9 46549630 46549701 -71312926 - MIR SINE MIR -161 101 34 784 269 25 81 chr9 46549720 46549917 -71312710 + MER102b DNA MER1_type 2 172 -1256 2647 155 48 31 chr9 46549917 46550162 -71312465 - MLT1C LTR MaLR -1 466 208 342 0 0 0 chr9 46550162 46550200 -71312427 + (TG)n Simple_repeat Simple_repeat 1 38 0 2647 155 48 31 chr9 46550200 46550412 -71312215 - MLT1C LTR MaLR -259 208 1 784 269 25 81 chr9 46550412 46550574 -71312053 + MER102b DNA MER1_type 172 341 0 299 23 47 0 chr9 46550928 46550971 -71311656 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 1735 186 53 42 chr9 46551119 46551480 -71311147 - MLT1A1 LTR MaLR 0 365 1 1456 146 78 57 chr9 46552686 46552967 -71309660 - AluJo SINE Alu -14 298 12 599 280 53 11 chr9 46553763 46553952 -71308675 + MIR SINE MIR 49 245 -17 2777 145 22 34 chr9 46555780 46556023 -71306604 - L1MC1 LINE L1 0 6333 6089 1875 171 0 0 chr9 46556023 46556328 -71306299 + AluJb SINE Alu 1 305 -7 2777 145 22 34 chr9 46556328 46556672 -71305955 - L1MC1 LINE L1 -244 6089 5676 1263 254 92 21 chr9 46557327 46557804 -71304823 - L1MD3 LINE L1 -10 8029 7453 4572 158 16 5 chr9 46558065 46558855 -71303772 - L1PB4 LINE L1 -3 6153 5355 6794 16 3 1 chr9 46559280 46560014 -71302613 - L1PA3 LINE L1 -5 6150 5416 1156 178 46 39 chr9 46560722 46560981 -71301646 + L1MB5 LINE L1 5914 6174 0 547 227 51 57 chr9 46561212 46561388 -71301239 + MER69A DNA AcHobo 3 177 0 677 275 129 74 chr9 46561540 46561673 -71300954 - L2 LINE L2 -61 3252 3128 2153 182 28 88 chr9 46561673 46562249 -71300378 - MER34 LTR ERV1 0 542 2 677 275 129 74 chr9 46562249 46562654 -71299973 - L2 LINE L2 -185 3128 2677 1046 179 31 0 chr9 46562663 46562858 -71299769 - MLT1B LTR MaLR -2 388 188 198 167 0 0 chr9 46564147 46564183 -71298444 + CT-rich Low_complexity Low_complexity 1 36 0 180 97 0 0 chr9 46564683 46564714 -71297913 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 216 200 0 0 chr9 46565560 46565605 -71297022 + (CA)n Simple_repeat Simple_repeat 2 46 0 229 121 0 52 chr9 46565714 46565772 -71296855 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 2053 130 0 7 chr9 46566659 46566959 -71295668 + AluSx SINE Alu 1 298 -14 1996 143 0 7 chr9 46566982 46567294 -71295333 + AluSx SINE Alu 1 310 0 335 227 154 27 chr9 46567398 46567508 -71295119 - HAL1b LINE L1 -437 911 788 371 264 28 90 chr9 46567553 46567731 -71294896 - HAL1b LINE L1 -418 930 764 257 308 0 0 chr9 46567865 46567943 -71294684 - MER20 DNA MER1_type -141 78 1 336 303 218 5 chr9 46568118 46568306 -71294321 + L2 LINE L2 2839 3066 -247 434 278 71 0 chr9 46568372 46568498 -71294129 + MIR SINE MIR 1 135 -127 228 286 0 0 chr9 46568508 46568564 -71294063 + L2 LINE L2 3214 3269 -3 199 187 88 176 chr9 46568583 46568620 -71294007 + MER5B DNA MER1_type 1 40 -138 1881 113 22 72 chr9 46568620 46568755 -71293872 + AluSx SINE Alu 1 141 -171 2616 44 0 0 chr9 46568755 46569053 -71293574 + AluY SINE Alu 1 298 -13 1881 113 22 72 chr9 46569053 46569237 -71293390 + AluSx SINE Alu 141 304 -8 199 187 88 176 chr9 46569237 46569290 -71293337 + MER5B DNA MER1_type 40 83 -95 1351 265 61 10 chr9 46569291 46569687 -71292940 - LTR16A LTR ERVL -20 430 15 374 273 40 0 chr9 46569688 46569787 -71292840 + MER5B DNA MER1_type 76 178 0 811 289 64 71 chr9 46570650 46571493 -71291134 + L2 LINE L2 2464 3309 -4 184 250 0 0 chr9 46571733 46571769 -71290858 - MIR SINE MIR -71 191 156 480 275 77 19 chr9 46572372 46572579 -71290048 - MIR SINE MIR -35 227 9 283 255 33 85 chr9 46572753 46572906 -71289721 + MIR SINE MIR 91 235 -27 24 32 0 0 chr9 46573792 46573823 -71288804 + AT_rich Low_complexity Low_complexity 1 31 0 309 279 0 59 chr9 46573905 46574041 -71288586 - MER103 DNA DNA 0 166 39 232 255 21 117 chr9 46574081 46574269 -71288358 + L2 LINE L2 3118 3287 -26 1714 123 70 11 chr9 46574535 46574819 -71287808 - AluJo SINE Alu -11 301 1 253 340 103 50 chr9 46575159 46575739 -71286888 + L2 LINE L2 1230 1840 -1474 334 311 46 62 chr9 46577711 46577978 -71284649 + L1ME LINE L1 5164 5426 -695 1550 178 29 11 chr9 46577978 46578259 -71284368 - AluJo SINE Alu -26 286 1 334 311 46 62 chr9 46578259 46578325 -71284302 + L1ME LINE L1 5426 5491 -630 183 186 0 0 chr9 46578425 46578468 -71284159 + (TA)n Simple_repeat Simple_repeat 1 43 0 232 266 9 18 chr9 46578484 46578593 -71284034 + (TA)n Simple_repeat Simple_repeat 2 109 0 215 100 0 25 chr9 46578655 46578669 -71283958 + (TA)n Simple_repeat Simple_repeat 2 15 -25 1928 185 9 3 chr9 46578669 46579015 -71283612 - MER7A DNA MER2_type 0 346 1 215 100 0 25 chr9 46579015 46579040 -71283587 + (TA)n Simple_repeat Simple_repeat 15 40 0 288 0 0 0 chr9 46579055 46579087 -71283540 + (CA)n Simple_repeat Simple_repeat 2 33 0 591 287 29 22 chr9 46579107 46579382 -71283245 + L1ME LINE L1 5498 5774 -347 2032 151 0 0 chr9 46579937 46580242 -71282385 + AluSx SINE Alu 1 305 -7 1772 170 31 3 chr9 46582494 46582788 -71279839 - AluJb SINE Alu -8 304 3 2115 133 7 0 chr9 46583225 46583534 -71279093 - AluSx SINE Alu -1 311 1 2206 123 7 0 chr9 46583682 46583982 -71278645 + AluJb SINE Alu 3 304 -8 189 238 24 0 chr9 46583994 46584036 -71278591 + L2 LINE L2 3210 3252 -20 1186 155 63 0 chr9 46584080 46584286 -71278341 + MER20 DNA MER1_type 1 219 0 1572 167 38 21 chr9 46584647 46584934 -71277693 - AluJo SINE Alu -7 305 14 56 0 0 0 chr9 46584934 46584990 -71277637 + AT_rich Low_complexity Low_complexity 1 56 0 696 191 124 11 chr9 46585696 46585874 -71276753 + MER3 DNA MER1_type 6 203 -6 2141 121 3 10 chr9 46585965 46586271 -71276356 + AluSq SINE Alu 1 304 -9 301 326 0 0 chr9 46586274 46586363 -71276264 - L1MC4 LINE L1 -1339 6703 6615 2284 98 0 0 chr9 46588217 46588504 -71274123 + AluSx SINE Alu 1 287 -25 21 0 0 0 chr9 46589212 46589233 -71273394 + AT_rich Low_complexity Low_complexity 1 21 0 515 226 65 0 chr9 46589893 46590017 -71272610 - MIR SINE MIR -53 209 78 505 238 7 34 chr9 46591068 46591215 -71271412 + MER97c DNA MER1_type? 29 171 -919 1729 169 26 32 chr9 46591224 46591532 -71271095 + AluJb SINE Alu 1 306 -6 1520 105 50 9 chr9 46591742 46591961 -71270666 + MER30 DNA MER1_type 3 230 0 523 269 81 70 chr9 46592921 46593278 -71269349 - MLT1K LTR MaLR 0 588 228 264 100 0 0 chr9 46593376 46593416 -71269211 + (TGAA)n Simple_repeat Simple_repeat 2 41 0 348 234 37 41 chr9 46593819 46593958 -71268669 + MIR SINE MIR 27 164 -63 514 288 191 15 chr9 46593973 46594193 -71268434 + MIR SINE MIR 5 262 0 1691 235 21 92 chr9 46594198 46594733 -71267894 - L2 LINE L2 0 3313 2867 2092 123 3 7 chr9 46594733 46595033 -71267594 - AluSx SINE Alu -13 299 1 1691 235 21 92 chr9 46595033 46595402 -71267225 - L2 LINE L2 -446 2867 2473 1572 119 35 8 chr9 46595430 46595690 -71266937 + MER44D DNA MER2_type 284 605 0 1813 178 35 11 chr9 46595690 46596061 -71266566 - MLT1B LTR MaLR -5 385 6 2676 198 48 14 chr9 46596872 46597547 -71265080 - Tigger7 DNA MER2_type 0 2587 2 357 255 140 75 chr9 46597548 46597748 -71264879 - MIR SINE MIR -16 246 34 1734 202 75 11 chr9 46598161 46598533 -71264094 - MSTD LTR MaLR 0 396 1 2305 75 0 39 chr9 46599238 46599571 -71263056 + AluY SINE Alu 1 311 0 27416 105 13 48 chr9 46599881 46606119 -71256508 - L1PA8 LINE L1 -6 6481 427 646 121 0 0 chr9 46606117 46606208 -71256419 - L1PA8 LINE L1 -6365 96 6 * 823 285 42 48 chr9 46606518 46606828 -71255799 - L1MEc LINE L1 -4686 1710 1400 2366 165 24 7 chr9 46606828 46607247 -71255380 - MSTB LTR MaLR 0 426 1 823 285 42 48 chr9 46607247 46607631 -71254996 - L1MEc LINE L1 -4996 1400 1020 1362 174 23 29 chr9 46607648 46608296 -71254331 - L1MB7 LINE L1 -20 6662 5935 5575 220 52 62 chr9 46608296 46608773 -71253854 - L1MB7 LINE L1 -3788 2856 2376 1280 85 62 0 chr9 46608773 46608949 -71253678 - U2 snRNA snRNA -1 187 1 5575 220 52 62 chr9 46608949 46608967 -71253660 - L1MB7 LINE L1 -4268 2376 2359 874 104 15 30 chr9 46608967 46609102 -71253525 - FLAM_C SINE Alu 0 133 1 5575 220 52 62 chr9 46609102 46611299 -71251328 - L1MB7 LINE L1 -4285 2359 151 257 178 0 0 chr9 46611299 46611344 -71251283 - MER31A LTR ERV1 -437 48 4 5575 220 52 62 chr9 46611344 46611480 -71251147 - L1MB7 LINE L1 -6493 151 15 22 0 0 0 chr9 46612749 46612771 -71249856 + AT_rich Low_complexity Low_complexity 1 22 0 2872 139 21 2 chr9 46612870 46613346 -71249281 - MER31A LTR ERV1 0 485 1 443 229 0 29 chr9 46614357 46614462 -71248165 + MIR SINE MIR 61 162 -100 1181 233 38 55 chr9 46614462 46614827 -71247800 + MLT1A1 LTR MaLR 1 359 -6 320 206 106 28 chr9 46615255 46615396 -71247231 - MER113 DNA MER1_type? -368 153 2 13055 135 48 16 chr9 46615640 46616112 -71246515 + Tigger7 DNA MER2_type 1 456 -2031 2028 159 22 8 chr9 46616112 46616471 -71246156 - THE1B LTR MaLR 0 364 1 13055 135 48 16 chr9 46616471 46617917 -71244710 + Tigger7 DNA MER2_type 456 2010 -477 216 0 0 0 chr9 46617917 46617941 -71244686 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 13055 135 48 16 chr9 46617941 46618353 -71244274 + Tigger7 DNA MER2_type 2010 2407 -80 220 154 39 0 chr9 46618358 46618410 -71244217 + (TA)n Simple_repeat Simple_repeat 1 54 0 347 161 0 0 chr9 46618460 46618516 -71244111 + Tigger7 DNA MER2_type 2402 2457 -30 40824 34 22 1 chr9 46619254 46625279 -71237348 - L1PA2 LINE L1 0 6155 2 918 118 65 24 chr9 46625361 46625530 -71237097 - L1MB3 LINE L1 -7 6176 6001 1132 183 87 37 chr9 46626330 46626652 -71235975 + MER44D DNA MER2_type 2 609 0 38284 73 6 2 chr9 46626827 46632960 -71229667 - L1PA5 LINE L1 0 6154 1 3032 273 83 18 chr9 46634197 46635524 -71227103 - L2 LINE L2 0 3313 1894 1664 176 5 67 chr9 46636421 46636807 -71225820 - MLT1A2 LTR MaLR -7 367 6 604 245 75 25 chr9 46637035 46637235 -71225392 + MER63A DNA MER1_type 1 210 0 306 343 81 17 chr9 46638014 46638186 -71224441 - MIR SINE MIR -59 203 21 772 155 34 130 chr9 46640073 46640280 -71222347 + MER5A DNA MER1_type 2 188 -1 271 270 30 80 chr9 46640283 46640383 -71222244 + MER5B DNA MER1_type 76 181 -8 264 225 381 29 chr9 46640754 46640927 -71221700 - MIR SINE MIR -27 235 2 1136 277 110 67 chr9 46641282 46641405 -71221222 - L2 LINE L2 -25 3288 3172 843 105 8 53 chr9 46641405 46641538 -71221089 + FLAM_C SINE Alu 1 127 -6 1136 277 110 67 chr9 46641538 46641554 -71221073 - L2 LINE L2 -141 3172 3158 225 0 0 0 chr9 46641554 46641579 -71221048 + (TA)n Simple_repeat Simple_repeat 2 26 0 * 252 0 0 0 chr9 46641578 46641606 -71221021 + (GA)n Simple_repeat Simple_repeat 2 29 0 1136 277 110 67 chr9 46641579 46641638 -71220989 - L2 LINE L2 -155 3158 3103 1747 154 20 23 chr9 46641638 46641989 -71220638 + L1MA7 LINE L1 5940 6289 -2 1136 277 110 67 chr9 46641989 46642645 -71219982 - L2 LINE L2 -210 3103 2204 1958 162 20 0 chr9 46643054 46643357 -71219270 + AluJb SINE Alu 1 309 -3 2190 237 66 2 chr9 46643362 46643907 -71218720 - MER119 DNA MER1_type -3 580 1 350 168 0 176 chr9 46644379 46644510 -71218117 - Ricksha DNA DNA -1143 903 796 2649 175 0 2 chr9 46644554 46645000 -71217627 - MLT2B3 LTR ERVL -108 446 2 25 51 0 0 chr9 46645086 46645125 -71217502 + AT_rich Low_complexity Low_complexity 1 39 0 240 200 46 46 chr9 46645533 46645598 -71217029 + MER69 DNA AcHobo 1 65 -2461 402 269 21 0 chr9 46645747 46645888 -71216739 + MER69 DNA AcHobo 2380 2523 -3 22 35 0 0 chr9 46646106 46646135 -71216492 + AT_rich Low_complexity Low_complexity 1 29 0 387 243 49 83 chr9 46647418 46647562 -71215065 + L2 LINE L2 3175 3313 0 283 333 93 13 chr9 46647570 46647720 -71214907 - MIR SINE MIR -88 174 13 24 32 0 0 chr9 46647877 46647908 -71214719 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr9 46648204 46648233 -71214394 + AT_rich Low_complexity Low_complexity 1 29 0 197 333 28 14 chr9 46648278 46648350 -71214277 + L2 LINE L2 3199 3271 -1 217 313 30 0 chr9 46649228 46649295 -71213332 - L2 LINE L2 -9 3304 3236 780 285 35 0 chr9 46649676 46649904 -71212723 + MIR SINE MIR 3 238 -24 1742 283 64 59 chr9 46650778 46651632 -71210995 + L1MEd LINE L1 56 965 -5345 1008 192 17 0 chr9 46651632 46651804 -71210823 - FAM SINE Alu 0 175 1 1742 283 64 59 chr9 46651804 46652358 -71210269 + L1MEd LINE L1 965 1515 -4795 10972 126 14 6 chr9 46652408 46654213 -71208414 + L1PA7 LINE L1 5 1806 -4645 40136 59 2 0 chr9 46654215 46660343 -71202284 + L1PA5 LINE L1 11 6145 -9 198 0 0 0 chr9 46660344 46660366 -71202261 + (TA)n Simple_repeat Simple_repeat 1 22 0 * 207 0 0 0 chr9 46660365 46660388 -71202239 + (CA)n Simple_repeat Simple_repeat 2 24 0 26094 83 10 7 chr9 46660391 46665046 -71197581 + L1PA7 LINE L1 1804 6468 -1 236 250 29 0 chr9 46665118 46665186 -71197441 + L1MEd LINE L1 2931 3000 -3129 35058 94 8 10 chr9 46665210 46671365 -71191262 + L1PA6 LINE L1 11 6149 -5 358 293 98 0 chr9 46671690 46671813 -71190814 - LTR33 LTR ERVL -168 353 219 482 266 43 0 chr9 46672086 46672270 -71190357 - L1M4 LINE L1 -2104 4042 3851 38302 63 3 1 chr9 46672836 46678757 -71183870 + L1PA7 LINE L1 221 6152 -2 236 250 29 0 chr9 46678829 46678897 -71183730 + L1MEd LINE L1 2931 3000 -3129 35109 94 8 10 chr9 46678921 46685078 -71177549 + L1PA6 LINE L1 11 6149 -5 358 293 98 0 chr9 46685403 46685526 -71177101 - LTR33 LTR ERVL -168 353 219 482 266 43 0 chr9 46685799 46685983 -71176644 - L1M4 LINE L1 -2104 4042 3851 826 310 80 16 chr9 46686299 46686938 -71175689 - L1ME3A LINE L1 -206 5964 5285 306 183 0 17 chr9 46687025 46687085 -71175542 - MLT1D LTR MaLR -442 63 5 2209 129 3 0 chr9 46687134 46687443 -71175184 - AluSx SINE Alu -2 310 1 330 324 57 8 chr9 46687447 46687694 -71174933 - L1ME3A LINE L1 -1956 4190 3932 2804 113 14 23 chr9 46687706 46688024 -71174603 + L1PB3 LINE L1 5713 6027 -127 1784 153 4 8 chr9 46688024 46688292 -71174335 + AluJb SINE Alu 1 267 -45 2804 113 14 23 chr9 46688292 46688414 -71174213 + L1PB3 LINE L1 6027 6149 -5 204 138 77 15 chr9 46688414 46688479 -71174148 + (TA)n Simple_repeat Simple_repeat 1 69 0 361 245 148 52 chr9 46688573 46688728 -71173899 - L1ME3A LINE L1 -2217 3929 3760 1091 158 28 42 chr9 46688874 46689089 -71173538 + MER20 DNA MER1_type 1 212 -7 308 175 204 19 chr9 46689084 46689187 -71173440 + MER69 DNA AcHobo 2389 2510 -16 * 203 158 0 0 chr9 46689269 46689307 -71173320 + (CAGAGA)n Simple_repeat Simple_repeat 3 40 0 213 178 0 0 chr9 46689325 46689370 -71173257 + GA-rich Low_complexity Low_complexity 2 46 0 700 148 0 9 chr9 46689425 46689540 -71173087 - AluJb SINE Alu -17 295 182 1197 194 0 9 chr9 46689594 46689816 -71172811 - AluJo SINE Alu -92 220 1 342 285 131 5 chr9 46689914 46690135 -71172492 + L1ME1 LINE L1 5612 5860 -306 24 100 0 0 chr9 46690142 46690222 -71172405 + AT_rich Low_complexity Low_complexity 1 80 0 2022 113 28 7 chr9 46690466 46690757 -71171870 - AluSx SINE Alu -15 297 1 28 61 0 0 chr9 46690907 46690956 -71171671 + AT_rich Low_complexity Low_complexity 1 49 0 1961 176 25 6 chr9 46692177 46692535 -71170092 + MLT1A1 LTR MaLR 1 365 0 347 252 55 97 chr9 46693000 46693381 -71169246 + L1ME4a LINE L1 5748 6112 -9 951 136 141 5 chr9 46693554 46693767 -71168860 + L1MA4A LINE L1 6055 6296 -7 533 261 126 11 chr9 46693802 46694150 -71168477 + L1M4 LINE L1 3071 3458 -2688 2404 163 107 36 chr9 46694595 46695155 -71167472 - LTR19C LTR ERV1 -3 776 177 680 259 149 79 chr9 46695440 46695543 -71167084 + L2 LINE L2 2609 2703 -610 2163 120 0 13 chr9 46695543 46695859 -71166768 + AluSx SINE Alu 1 312 0 680 259 149 79 chr9 46695859 46696225 -71166402 + L2 LINE L2 2703 3167 -146 2767 135 35 0 chr9 46696225 46696676 -71165951 - LTR24 LTR ERV1 0 467 1 680 259 149 79 chr9 46696676 46696774 -71165853 + L2 LINE L2 3167 3257 -56 1190 98 0 22 chr9 46698534 46698717 -71163910 - AluSq SINE Alu 0 313 135 1905 125 3 10 chr9 46698718 46699013 -71163614 - AluSx SINE Alu -19 293 1 210 293 280 0 chr9 46699082 46699239 -71163388 - MIR SINE MIR -14 248 48 1623 149 26 11 chr9 46699374 46699642 -71162985 - AluJb SINE Alu -37 275 4 660 301 256 23 chr9 46699673 46700614 -71162013 - L2 LINE L2 -341 2973 1814 433 287 183 50 chr9 46701053 46701370 -71161257 - L2 LINE L2 -809 2505 2147 531 254 8 0 chr9 46702264 46702390 -71160237 - FLAM_A SINE Alu -6 127 1 305 395 6 13 chr9 46703202 46703359 -71159268 + L1MEd LINE L1 3 158 -5961 1764 127 29 22 chr9 46703362 46703676 -71158951 - Tigger3(Golem) DNA MER2_type -1 3028 2713 2106 101 62 0 chr9 46703801 46704089 -71158538 + AluSq SINE Alu 1 306 -7 807 306 52 21 chr9 46704122 46704734 -71157893 + L1MEd LINE L1 2120 2750 -3379 23 0 0 0 chr9 46704774 46704797 -71157830 + AT_rich Low_complexity Low_complexity 1 23 0 401 254 136 17 chr9 46704914 46705032 -71157595 + MIR3 SINE MIR 66 197 -11 460 298 73 42 chr9 46705428 46705619 -71157008 - MIR SINE MIR -63 199 3 422 236 121 14 chr9 46705660 46705800 -71156827 + MIR SINE MIR 107 261 -1 363 253 0 11 chr9 46706189 46706276 -71156351 + MIR SINE MIR 4 89 -173 23 33 0 0 chr9 46706736 46706766 -71155861 + AT_rich Low_complexity Low_complexity 1 30 0 1957 125 0 4 chr9 46706769 46707050 -71155577 + AluSx SINE Alu 1 280 -32 21 0 0 0 chr9 46707087 46707108 -71155519 + AT_rich Low_complexity Low_complexity 1 21 0 278 328 112 0 chr9 46707413 46707538 -71155089 - MER117 DNA MER1_type -58 139 1 199 295 39 39 chr9 46707623 46707701 -71154926 - MIR3 SINE MIR -7 201 124 301 309 83 42 chr9 46707836 46707907 -71154720 + L1M4 LINE L1 4490 4557 -1589 1823 168 10 7 chr9 46707907 46708210 -71154417 + AluJb SINE Alu 1 304 -8 301 309 83 42 chr9 46708210 46708523 -71154104 + L1M4 LINE L1 4557 4890 -1256 1972 234 155 23 chr9 46708537 46709249 -71153378 - MER21B LTR ERV1 -1 905 19 2301 109 10 0 chr9 46709249 46709553 -71153074 - AluSq SINE Alu -6 307 1 1972 234 155 23 chr9 46709553 46709569 -71153058 - MER21B LTR ERV1 -887 19 6 1346 164 22 4 chr9 46709569 46709801 -71152826 - MER46A DNA MER2_type 0 236 1 26 74 0 0 chr9 46709844 46709898 -71152729 + AT_rich Low_complexity Low_complexity 1 54 0 870 303 186 17 chr9 46710154 46710867 -71151760 - L2 LINE L2 -95 3218 2362 248 169 51 0 chr9 46710911 46710970 -71151657 - MER104 DNA Tc2 -83 97 36 187 200 0 25 chr9 46711000 46711040 -71151587 - L2 LINE L2 -968 2346 2308 825 132 31 0 chr9 46711040 46711169 -71151458 + FLAM_C SINE Alu 1 133 -10 820 258 148 36 chr9 46711174 46711538 -71151089 - L2 LINE L2 -994 2320 1916 301 243 92 40 chr9 46711568 46711720 -71150907 - L1MEd LINE L1 -2294 3835 3676 353 205 107 45 chr9 46712018 46712130 -71150497 - L1MEd LINE L1 -2899 3230 3112 299 297 140 19 chr9 46712132 46712715 -71149912 - L1MEd LINE L1 -3062 3067 2379 2275 55 0 0 chr9 46712715 46712987 -71149640 - AluY SINE Alu -39 272 1 299 297 140 19 chr9 46712987 46713124 -71149503 - L1MEd LINE L1 -3750 2379 2260 27 29 0 0 chr9 46713514 46713548 -71149079 + AT_rich Low_complexity Low_complexity 1 34 0 237 284 78 12 chr9 46713591 46713788 -71148839 - L1MEd LINE L1 -4549 1580 1447 197 0 0 67 chr9 46713826 46713856 -71148771 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 1314 150 73 30 chr9 46713874 46714107 -71148520 - AluJb SINE Alu -69 243 1 278 264 54 16 chr9 46714338 46714525 -71148102 - L1MEd LINE L1 -4910 1209 1095 236 277 147 55 chr9 46714775 46715038 -71147589 - L1MEd LINE L1 -5737 382 59 22 0 0 0 chr9 46715038 46715060 -71147567 + AT_rich Low_complexity Low_complexity 1 22 0 236 277 147 55 chr9 46715060 46715122 -71147505 - L1MEd LINE L1 -6060 59 4 22 70 0 0 chr9 46715872 46715915 -71146712 + AT_rich Low_complexity Low_complexity 1 43 0 355 244 13 0 chr9 46717511 46717589 -71145038 - L2 LINE L2 0 3313 3235 1658 162 10 21 chr9 46717842 46718132 -71144495 + AluJo SINE Alu 3 289 -23 2542 74 0 0 chr9 46718141 46718450 -71144177 + AluSq SINE Alu 1 309 -4 605 54 151 0 chr9 46718456 46718549 -71144078 - L1PA15 LINE L1 -16 6149 6043 248 100 50 0 chr9 46719192 46719232 -71143395 - Alu SINE Alu -13 289 248 2141 88 10 17 chr9 46719650 46719946 -71142681 - AluSx SINE Alu -18 294 1 205 313 0 0 chr9 46720613 46720696 -71141931 + T-rich Low_complexity Low_complexity 1 83 0 1873 141 0 10 chr9 46721788 46722079 -71140548 + AluJb SINE Alu 1 288 -24 29 0 0 0 chr9 46722081 46722110 -71140517 + AT_rich Low_complexity Low_complexity 1 29 0 336 353 16 0 chr9 46722925 46723047 -71139580 - MIR3 SINE MIR -17 191 68 380 287 105 35 chr9 46723540 46723683 -71138944 + MIR SINE MIR 21 173 -89 2379 203 34 0 chr9 46723809 46724277 -71138350 - MER68 LTR ERV1 -78 484 1 1752 179 13 0 chr9 46725316 46725623 -71137004 - AluJb SINE Alu -1 311 1 571 266 85 39 chr9 46725766 46726071 -71136556 - HAL1 LINE L1 -1465 1042 724 277 264 146 11 chr9 46726734 46726912 -71135715 - L1MDa LINE L1 -2310 4334 4133 230 292 103 47 chr9 46726987 46727633 -71134994 - L1MDa LINE L1 -2884 3760 3062 2021 131 0 0 chr9 46727633 46727944 -71134683 - AluSx SINE Alu 0 311 1 230 292 103 47 chr9 46727944 46728055 -71134572 - L1MDa LINE L1 -3582 3062 2959 225 0 0 0 chr9 46728482 46728507 -71134120 + (TTA)n Simple_repeat Simple_repeat 2 26 0 1126 169 62 13 chr9 46728523 46728748 -71133879 + MER46A DNA MER2_type 1 236 0 425 209 0 2 chr9 46728860 46728953 -71133674 - L1MDa LINE L1 -3858 2786 2698 501 207 0 0 chr9 46729003 46729085 -71133542 - MER21B LTR ERV1 -767 96 15 423 303 27 16 chr9 46729102 46729290 -71133337 - L1MDa LINE L1 -4489 2157 1968 267 114 0 0 chr9 46729285 46729329 -71133298 - L1MDa LINE L1 -5323 1219 1176 * 708 106 26 9 chr9 46729330 46729443 -71133184 - MER75 DNA T2_type -1 503 389 289 159 0 0 chr9 46729439 46729483 -71133144 - MER75 DNA T2_type -470 44 1 * 1758 198 27 40 chr9 46729483 46729933 -71132694 - L1MDa LINE L1 -5363 1179 736 299 215 15 0 chr9 46729929 46729994 -71132633 - L1MDa LINE L1 -6365 177 112 * 1745 204 39 69 chr9 46729990 46730426 -71132201 - L1M4 LINE L1 -5799 743 321 235 45 0 136 chr9 46730427 46730471 -71132156 + MADE1 DNA Mariner 1 38 -42 1450 208 3 37 chr9 46730477 46730799 -71131828 - L1M4 LINE L1 -6227 315 5 586 225 96 6 chr9 46730805 46730983 -71131644 - L1M4 LINE L1 -1511 4635 4442 3135 255 86 32 chr9 46731005 46732292 -71130335 - L1M4 LINE L1 -1886 4260 2905 740 261 64 0 chr9 46732294 46732497 -71130130 - L1ME LINE L1 -389 5777 5562 1930 318 88 45 chr9 46732626 46733790 -71128837 - L2 LINE L2 -1763 1551 333 2434 58 0 19 chr9 46733790 46734100 -71128527 + AluY SINE Alu 1 304 -7 1930 318 88 45 chr9 46734100 46734133 -71128494 - L2 LINE L2 -2981 333 303 22 0 0 0 chr9 46734792 46734814 -71127813 + AT_rich Low_complexity Low_complexity 1 22 0 1721 112 37 0 chr9 46734932 46735173 -71127454 + AluSx SINE Alu 47 296 -16 2802 122 11 2 chr9 46735639 46736072 -71126555 - Tigger4(Zombi) DNA MER2_type 0 2731 2295 564 149 0 0 chr9 46736069 46736156 -71126471 - Tigger4(Zombi) DNA MER2_type -2644 87 1 * 201 419 0 0 chr9 46736305 46736398 -71126229 - L2 LINE L2 -1 3312 3220 312 259 44 7 chr9 46737389 46737524 -71125103 - HAL1 LINE L1 -90 2417 2278 30 27 0 0 chr9 46737588 46737625 -71125002 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr9 46737929 46737952 -71124675 + AT_rich Low_complexity Low_complexity 1 23 0 794 284 134 22 chr9 46738016 46738389 -71124238 - HAL1 LINE L1 -608 1899 1465 255 31 0 0 chr9 46738389 46738421 -71124206 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 794 284 134 22 chr9 46738421 46738502 -71124125 - HAL1 LINE L1 -1042 1465 1394 447 295 46 25 chr9 46740214 46740478 -71122149 + L1ME4a LINE L1 5661 5892 -229 1689 145 7 51 chr9 46740697 46740825 -71121802 + AluSx SINE Alu 1 133 -179 1983 116 21 0 chr9 46740825 46741110 -71121517 + AluSc SINE Alu 1 291 -18 1689 145 7 51 chr9 46741110 46741277 -71121350 + AluSx SINE Alu 133 283 -29 237 65 0 0 chr9 46741281 46741312 -71121315 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 1978 143 13 7 chr9 46741554 46741854 -71120773 + AluJb SINE Alu 1 302 -10 23 0 0 0 chr9 46741908 46741931 -71120696 + AT_rich Low_complexity Low_complexity 1 23 0 406 268 124 48 chr9 46742204 46742413 -71120214 - MIR SINE MIR -30 232 8 1225 179 86 38 chr9 46742692 46742983 -71119644 - AluJo SINE Alu -7 305 1 2093 140 7 0 chr9 46743011 46743319 -71119308 + AluSx SINE Alu 1 310 -2 772 272 70 19 chr9 46744438 46744651 -71117976 + MIR SINE MIR 1 224 -38 389 184 70 18 chr9 46745583 46745697 -71116930 + MER113 DNA MER1_type? 38 157 -364 1045 159 0 0 chr9 46745717 46745874 -71116753 + AluSx SINE Alu 1 157 -155 2054 240 210 11 chr9 46745877 46746112 -71116515 - L1MC4 LINE L1 -723 7319 7132 2296 78 0 14 chr9 46746112 46746408 -71116219 - AluSq SINE Alu -19 294 3 2054 240 210 11 chr9 46746408 46746930 -71115697 - L1MC4 LINE L1 -910 7132 6411 2233 54 54 7 chr9 46746930 46747226 -71115401 + AluY SINE Alu 1 310 -1 430 228 42 56 chr9 46747287 46747502 -71115125 - L1M4 LINE L1 -1672 4474 4263 13282 114 36 83 chr9 46747530 46748474 -71114153 - Tigger1 DNA MER2_type -46 2372 1385 2005 121 11 4 chr9 46748474 46748754 -71113873 - AluSx SINE Alu -30 282 1 13282 114 36 83 chr9 46748754 46750219 -71112408 - Tigger1 DNA MER2_type -1033 1385 82 624 90 11 0 chr9 46750219 46750308 -71112319 - HY4 scRNA scRNA -3 90 1 13282 114 36 83 chr9 46750308 46750386 -71112241 - Tigger1 DNA MER2_type -2336 82 2 492 220 93 20 chr9 46750387 46750537 -71112090 - L1M4 LINE L1 -1883 4263 4103 263 150 0 0 chr9 46750538 46750578 -71112049 - THE1C LTR MaLR 0 428 389 1229 114 11 0 chr9 46750579 46750755 -71111872 + AluSg/x SINE Alu 133 310 -2 1514 147 77 43 chr9 46750758 46751085 -71111542 - THE1C LTR MaLR -37 338 1 2175 261 73 8 chr9 46751085 46751814 -71110813 - L1M4 LINE L1 -2040 4106 3331 1805 254 64 86 chr9 46751829 46752085 -71110542 - L1ME LINE L1 -5158 912 652 213 0 26 51 chr9 46752085 46752124 -71110503 + (TTTTG)n Simple_repeat Simple_repeat 1 38 0 1966 119 0 7 chr9 46752128 46752406 -71110221 - AluSq SINE Alu -37 276 1 1805 254 64 86 chr9 46752406 46753067 -71109560 - L1ME LINE L1 -5421 649 10 517 192 85 34 chr9 46753070 46753247 -71109380 - L1MC5 LINE L1 -166 7795 7610 25 65 0 0 chr9 46753753 46753799 -71108828 + AT_rich Low_complexity Low_complexity 1 46 0 23 0 0 0 chr9 46754909 46754932 -71107695 + AT_rich Low_complexity Low_complexity 1 23 0 1524 168 24 40 chr9 46756708 46757005 -71105622 + AluJb SINE Alu 2 293 -19 23 54 0 0 chr9 46757362 46757399 -71105228 + AT_rich Low_complexity Low_complexity 1 37 0 4417 178 67 40 chr9 46757775 46758812 -71103815 - Charlie1a DNA MER1_type -21 1434 369 466 157 0 0 chr9 46758812 46758882 -71103745 - MER2 DNA MER2_type 0 345 276 778 162 0 0 chr9 46758883 46759000 -71103627 + FLAM_C SINE Alu 1 117 -16 1847 139 3 7 chr9 46759030 46759317 -71103310 - MER2 DNA MER2_type -58 287 2 1686 215 11 39 chr9 46759324 46759706 -71102921 - Charlie1a DNA MER1_type -1084 371 1 1864 146 38 0 chr9 46760001 46760288 -71102339 - AluJo SINE Alu -14 298 1 2137 110 7 3 chr9 46761160 46761459 -71101168 + AluSq SINE Alu 1 300 -13 459 266 156 0 chr9 46761678 46761832 -71100795 + MIR SINE MIR 2 179 -83 883 258 64 114 chr9 46763200 46763885 -71098742 - MER21B LTR ERV1 -156 707 57 652 209 34 0 chr9 46764832 46764980 -71097647 + L1MB7 LINE L1 6019 6171 -13 252 211 110 28 chr9 46765041 46765150 -71097477 + L1MC4a LINE L1 5826 5943 -1865 204 67 0 0 chr9 46765203 46765233 -71097394 + (T)n Simple_repeat Simple_repeat 1 30 0 279 311 178 21 chr9 46765367 46765743 -71096884 + L1MC4a LINE L1 6215 6649 -1159 * 832 218 103 73 chr9 46765733 46766091 -71096536 + L1MC5 LINE L1 6689 7057 -904 539 203 191 57 chr9 46766092 46766407 -71096220 + L1MC5 LINE L1 6931 7287 -674 1650 153 181 11 chr9 46766412 46766771 -71095856 - MSTA LTR MaLR -8 420 1 9217 141 17 31 chr9 46766771 46768371 -71094256 - MSTA-int LTR MaLR 0 1580 3 1846 150 169 0 chr9 46768373 46768739 -71093888 - MSTA LTR MaLR 0 428 1 428 215 55 49 chr9 46768741 46768784 -71093843 + L1MC5 LINE L1 7289 7330 -631 973 166 112 44 chr9 46768784 46768989 -71093638 - MER20 DNA MER1_type 0 219 1 428 215 55 49 chr9 46768989 46769108 -71093519 + L1MC5 LINE L1 7330 7452 -509 1255 186 108 22 chr9 46769108 46769151 -71093476 - Charlie5 DNA MER1_type 0 2624 2586 1986 114 37 13 chr9 46769151 46769449 -71093178 - AluSx SINE Alu -7 305 1 1255 186 108 22 chr9 46769449 46769765 -71092862 - Charlie5 DNA MER1_type -38 2586 2234 468 186 26 9 chr9 46769767 46769880 -71092747 - MER3 DNA MER1_type -47 162 48 1425 167 53 60 chr9 46769900 46770354 -71092273 + L1MC5 LINE L1 7480 7930 -31 802 206 32 16 chr9 46770371 46770560 -71092067 + L1ME1 LINE L1 55 246 -6150 3782 216 98 105 chr9 46770580 46770846 -71091781 + L1ME1 LINE L1 3374 3640 -2575 1868 169 7 13 chr9 46770846 46771154 -71091473 + AluJb SINE Alu 1 306 -6 3782 216 98 105 chr9 46771154 46771914 -71090713 + L1ME1 LINE L1 3640 4404 -1811 710 257 0 23 chr9 46771914 46772089 -71090538 + AluJb SINE Alu 121 291 -21 1988 124 0 0 chr9 46772091 46772357 -71090270 + AluSx SINE Alu 37 302 -10 3782 216 98 105 chr9 46772357 46773127 -71089500 + L1ME1 LINE L1 4405 5334 -881 436 234 104 52 chr9 46773135 46773327 -71089300 + MER58C DNA MER1_type 14 215 0 376 211 66 6 chr9 46773335 46773460 -71089167 + L1ME1 LINE L1 5338 5468 -765 1233 207 148 55 chr9 46773510 46773816 -71088811 + L1ME1 LINE L1 5453 5822 -413 1802 182 18 0 chr9 46773816 46774102 -71088525 + AluJb SINE Alu 1 291 -21 1233 207 148 55 chr9 46774102 46774283 -71088344 + L1ME1 LINE L1 5822 5985 -250 455 192 39 0 chr9 46774286 46774390 -71088237 + L1MA10 LINE L1 6186 6293 -41 2371 91 60 20 chr9 46775431 46775781 -71086846 - THE1B LTR MaLR 0 364 1 2067 113 32 26 chr9 46776053 46776362 -71086265 - AluSx SINE Alu -1 311 1 1604 172 20 10 chr9 46776621 46776917 -71085710 - AluJo SINE Alu -13 299 1 688 208 0 0 chr9 46777496 46777616 -71085011 + FLAM_A SINE Alu 16 135 -7 2595 44 0 0 chr9 46777754 46778050 -71084577 + AluY SINE Alu 1 296 -15 259 329 59 33 chr9 46778570 46778722 -71083905 + MIR SINE MIR 86 241 -21 5703 21 0 0 chr9 46780308 46780989 -71081638 + L1PA3 LINE L1 5455 6135 -20 199 0 31 31 chr9 46780993 46781025 -71081602 + (TAA)n Simple_repeat Simple_repeat 1 32 0 349 293 126 17 chr9 46781157 46781338 -71081289 + MIR SINE MIR 45 250 -12 519 307 78 28 chr9 46781657 46781875 -71080752 + MIR SINE MIR 20 248 -14 288 300 44 0 chr9 46781904 46781994 -71080633 + L2 LINE L2 3179 3272 0 1962 126 7 21 chr9 46782139 46782462 -71080165 + AluSx SINE Alu 1 319 0 25 0 0 0 chr9 46783013 46783038 -71079589 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr9 46783166 46783196 -71079431 + AT_rich Low_complexity Low_complexity 1 30 0 1445 301 99 42 chr9 46783898 46784820 -71077807 - L2 LINE L2 -71 3242 2266 1795 186 3 0 chr9 46787016 46787312 -71075315 + AluJb SINE Alu 1 297 -15 692 143 40 48 chr9 46787424 46787550 -71075077 + FLAM_C SINE Alu 1 125 -8 295 169 0 31 chr9 46787550 46787615 -71075012 + Charlie5 DNA MER1_type 2522 2584 -28 2136 124 7 0 chr9 46787674 46787973 -71074654 - AluSx SINE Alu -11 301 1 305 122 0 20 chr9 46788092 46788141 -71074486 - L2 LINE L2 0 3313 3266 32 26 0 0 chr9 46788548 46788587 -71074040 + AT_rich Low_complexity Low_complexity 1 39 0 2025 147 0 7 chr9 46789676 46789976 -71072651 + AluJb SINE Alu 1 298 -14 1883 126 0 18 chr9 46790400 46790678 -71071949 + AluSx SINE Alu 1 273 -39 22 0 0 0 chr9 46791355 46791377 -71071250 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr9 46791701 46791736 -71070891 + AT_rich Low_complexity Low_complexity 1 35 0 2194 86 0 4 chr9 46792818 46793131 -71069496 - AluSg SINE Alu 0 312 1 25 31 0 0 chr9 46793853 46793885 -71068742 + AT_rich Low_complexity Low_complexity 1 32 0 261 231 92 0 chr9 46793920 46793985 -71068642 + MIR SINE MIR 122 192 -70 23 68 0 0 chr9 46794281 46794325 -71068302 + AT_rich Low_complexity Low_complexity 1 44 0 554 178 93 0 chr9 46794990 46795097 -71067530 - FLAM_C SINE Alu -16 117 1 189 197 66 16 chr9 46795154 46795215 -71067412 - MIR3 SINE MIR -19 189 126 2270 88 10 3 chr9 46795240 46795535 -71067092 - AluSq SINE Alu -16 297 1 199 283 0 101 chr9 46795624 46795669 -71066958 - MIR SINE MIR -74 134 103 657 164 31 8 chr9 46795669 46795797 -71066830 - FLAM_C SINE Alu 0 133 3 199 283 0 101 chr9 46795797 46795850 -71066777 - MIR SINE MIR -105 103 46 601 302 51 51 chr9 46796125 46796244 -71066383 - MLT1J LTR MaLR -160 351 233 725 174 16 0 chr9 46796244 46796365 -71066262 + FLAM_A SINE Alu 5 127 -6 601 302 51 51 chr9 46796365 46796596 -71066031 - MLT1J LTR MaLR -277 234 1 642 270 150 13 chr9 46796723 46796956 -71065671 + L2 LINE L2 3049 3313 0 28 0 0 0 chr9 46797313 46797341 -71065286 + AT_rich Low_complexity Low_complexity 1 28 0 1671 109 8 27 chr9 46797662 46797957 -71064670 - AluSq SINE Alu 0 313 42 1935 112 26 40 chr9 46798519 46798682 -71063945 - AluSq SINE Alu -13 300 141 2392 109 0 0 chr9 46798682 46798993 -71063634 - AluSx SINE Alu -1 311 1 1935 112 26 40 chr9 46798993 46799132 -71063495 - AluSq SINE Alu -172 141 2 390 94 141 0 chr9 46799324 46799388 -71063239 - MADE1 DNA Mariner 0 80 8 344 296 68 43 chr9 46799450 46799503 -71063124 - MIR SINE MIR -54 208 158 2324 90 3 10 chr9 46799503 46799814 -71062813 + AluSp SINE Alu 1 309 -4 344 296 68 43 chr9 46799814 46799922 -71062705 - MIR SINE MIR -104 158 43 237 245 86 53 chr9 46800163 46800314 -71062313 + L1MC/D LINE L1 5751 5906 -1902 1143 118 0 0 chr9 46800587 46800739 -71061888 - AluSq SINE Alu -28 285 134 250 250 89 0 chr9 46801971 46802095 -71060532 - L1P5 LINE L1 -700 5451 5317 630 115 0 10 chr9 46802189 46802293 -71060334 - LTR12 LTR ERV1 0 714 612 295 160 0 40 chr9 46802340 46802415 -71060212 - LTR30 LTR ERV1 -98 624 553 931 177 105 34 chr9 46802416 46802743 -71059884 - LTR12 LTR ERV1 -429 285 1 360 200 0 0 chr9 46802778 46802838 -71059789 - MER2 DNA MER2_type 0 345 286 463 231 38 71 chr9 46802959 46803055 -71059572 + L1ME1 LINE L1 4018 4116 -2030 2417 95 0 13 chr9 46803055 46803370 -71059257 - AluY SINE Alu 0 311 1 463 231 38 71 chr9 46803370 46803485 -71059142 + L1ME1 LINE L1 4116 4222 -1924 3588 221 52 29 chr9 46803609 46804188 -71058439 + L1ME1 LINE L1 4232 4796 -1370 1901 139 0 44 chr9 46804188 46804505 -71058122 + AluJb SINE Alu 1 303 -9 3588 221 52 29 chr9 46804505 46804669 -71057958 + L1ME1 LINE L1 4796 4955 -1211 1027 177 0 0 chr9 46804669 46804827 -71057800 + FAM SINE Alu 1 158 -17 3588 221 52 29 chr9 46804827 46805782 -71056845 + L1ME1 LINE L1 4955 5972 -194 1356 111 6 0 chr9 46805840 46806062 -71056565 - AluSg/x SINE Alu 0 325 103 1389 139 14 0 chr9 46807228 46807451 -71055176 + AluSg/x SINE Alu 83 308 -4 682 204 0 0 chr9 46807606 46807719 -71054908 + AluJo/FLAM SINE Alu 2 114 -188 2068 134 3 0 chr9 46807722 46808021 -71054606 + AluSx SINE Alu 1 300 -12 2254 121 0 3 chr9 46808168 46808538 -71054089 + AluSx SINE Alu 1 369 0 23 0 0 0 chr9 46808616 46808639 -71053988 + AT_rich Low_complexity Low_complexity 1 23 0 1684 162 11 4 chr9 46808645 46808916 -71053711 + AluJb SINE Alu 1 273 -39 1964 95 10 58 chr9 46809062 46809356 -71053271 + AluSx SINE Alu 1 280 -32 300 154 0 0 chr9 46809356 46809408 -71053219 + G-rich Low_complexity Low_complexity 1 52 0 1794 184 3 7 chr9 46809652 46809961 -71052666 + AluJo SINE Alu 1 308 -4 441 94 0 0 chr9 46810148 46810212 -71052415 + Alu SINE Alu 235 298 -11 2213 124 0 13 chr9 46810218 46810533 -71052094 + AluSx SINE Alu 1 311 -1 298 329 21 51 chr9 46810533 46810770 -71051857 - MLT1K LTR MaLR -84 504 275 1499 173 20 4 chr9 46810876 46811124 -71051503 + AluJb SINE Alu 1 252 -60 700 185 68 0 chr9 46811178 46811340 -71051287 + LTR52 LTR ERVL 245 417 -4 281 143 0 0 chr9 46811420 46811469 -71051158 + AluJb SINE Alu 250 298 -4 2350 94 3 3 chr9 46811578 46811876 -71050751 - AluSp SINE Alu -15 298 1 2149 133 0 13 chr9 46811876 46812185 -71050442 - AluSq SINE Alu -8 305 1 447 100 25 25 chr9 46812205 46812285 -71050342 + L1MA8 LINE L1 6200 6279 -12 1451 118 84 19 chr9 46813912 46814175 -71048452 + AluSx SINE Alu 1 280 -32 22 0 0 0 chr9 46814679 46814701 -71047926 + AT_rich Low_complexity Low_complexity 1 22 0 932 116 0 0 chr9 46814878 46815007 -71047620 - FLAM_C SINE Alu -3 130 2 324 140 0 0 chr9 46815221 46815271 -71047356 - MER58 DNA MER1_type -16 2404 2355 771 209 48 48 chr9 46815287 46815517 -71047110 - MER58 DNA MER1_type -2188 232 3 263 274 126 37 chr9 46815692 46815827 -71046800 - MIR SINE MIR -39 223 77 2567 112 35 40 chr9 46815844 46816042 -71046585 + MSTA LTR MaLR 1 198 -230 2183 117 0 16 chr9 46816042 46816349 -71046278 + AluSq SINE Alu 1 302 -11 2567 112 35 40 chr9 46816349 46816442 -71046185 + MSTA LTR MaLR 198 290 -138 2125 124 10 3 chr9 46816442 46816749 -71045878 + AluSx SINE Alu 1 309 -3 2567 112 35 40 chr9 46816749 46816886 -71045741 + MSTA LTR MaLR 290 428 0 428 248 174 60 chr9 46817293 46817575 -71045052 - L1ME4a LINE L1 0 6121 5808 706 282 115 32 chr9 46817825 46817860 -71044767 - L1ME4a LINE L1 -296 5825 5794 2197 96 4 4 chr9 46817860 46818181 -71044446 - AluSx SINE Alu 0 323 3 706 282 115 32 chr9 46818181 46818648 -71043979 - L1ME4a LINE L1 -327 5794 5280 1264 202 143 0 chr9 46818978 46819236 -71043391 - AluJo SINE Alu -7 295 1 2358 106 0 0 chr9 46819260 46819563 -71043064 - AluSg SINE Alu -7 303 1 1480 185 43 36 chr9 46819771 46820073 -71042554 - AluJo SINE Alu -8 304 1 473 296 187 9 chr9 46820324 46820774 -71041853 - L1ME4a LINE L1 -2828 3318 2789 857 133 8 0 chr9 46820781 46820909 -71041718 - FRAM SINE Alu -22 154 26 1351 311 117 23 chr9 46821044 46822462 -71040165 + L2 LINE L2 1754 3310 -3 387 282 89 7 chr9 46822518 46822664 -71039963 + MIR SINE MIR 36 190 -65 243 0 0 0 chr9 46822751 46822778 -71039849 + (CA)n Simple_repeat Simple_repeat 1 27 0 207 146 0 0 chr9 46826066 46826107 -71036520 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 1893 154 38 24 chr9 46826729 46827099 -71035528 + MLT1B LTR MaLR 16 390 0 2353 86 0 3 chr9 46827479 46827769 -71034858 + AluSx SINE Alu 16 304 -8 301 244 67 25 chr9 46827770 46827889 -71034738 - L3 LINE CR1 -285 1292 1169 416 266 148 20 chr9 46827898 46828101 -71034526 - MIR SINE MIR -32 230 2 213 39 0 0 chr9 46829239 46829265 -71033362 + (CA)n Simple_repeat Simple_repeat 2 27 0 1222 169 108 58 chr9 46830302 46830627 -71032000 + MER58B DNA MER1_type 1 341 0 1009 157 19 0 chr9 46830647 46830806 -71031821 + AluSg/x SINE Alu 134 295 -15 1664 124 4 20 chr9 46832402 46832651 -71029976 + AluJb SINE Alu 58 302 -10 805 171 0 0 chr9 46832708 46832831 -71029796 + FLAM_C SINE Alu 1 123 -20 195 42 0 0 chr9 46832902 46832926 -71029701 + (CA)n Simple_repeat Simple_repeat 1 24 0 349 329 92 24 chr9 46832963 46833385 -71029242 + L1MC4a LINE L1 3909 4359 -1787 593 302 111 54 chr9 46833398 46834268 -71028359 + L1MC4a LINE L1 4457 4956 -1190 1569 186 36 4 chr9 46834268 46834573 -71028054 + AluJb SINE Alu 1 314 0 593 302 111 54 chr9 46834573 46835047 -71027580 + L1MC4a LINE L1 4956 5401 -745 745 203 15 0 chr9 46835114 46835247 -71027380 + AluSq/x SINE Alu 2 136 -177 21 0 0 0 chr9 46835411 46835432 -71027195 + AT_rich Low_complexity Low_complexity 1 21 0 771 180 0 0 chr9 46835504 46835626 -71027001 + FLAM_C SINE Alu 2 123 -20 2166 108 0 29 chr9 46835790 46836096 -71026531 + AluSx SINE Alu 1 297 -15 2284 106 0 10 chr9 46837096 46837398 -71025229 - AluSx SINE Alu -13 299 1 1810 147 44 7 chr9 46837448 46837741 -71024886 - AluJb SINE Alu -8 304 1 261 283 17 67 chr9 46837930 46838050 -71024577 - MIR3 SINE MIR -87 121 8 1559 185 3 50 chr9 46839657 46839960 -71022667 + AluJo SINE Alu 1 289 -23 416 59 0 0 chr9 46839960 46840011 -71022616 + AluSq/x SINE Alu 85 135 -177 2223 116 3 3 chr9 46840011 46840322 -71022305 + AluSx SINE Alu 1 311 -1 2181 108 10 13 chr9 46840339 46840683 -71021944 + AluSx SINE Alu 1 312 0 2153 128 0 0 chr9 46841474 46841779 -71020848 + AluSx SINE Alu 1 305 -7 1193 278 126 40 chr9 46841812 46842344 -71020283 + MLT1K LTR MaLR 11 588 0 385 257 76 29 chr9 46842658 46842829 -71019798 + MIR SINE MIR 83 261 -1 1356 151 76 93 chr9 46842924 46843215 -71019412 + AluJb SINE Alu 1 286 -26 25 0 0 0 chr9 46843217 46843242 -71019385 + AT_rich Low_complexity Low_complexity 1 25 0 480 291 42 19 chr9 46843349 46843562 -71019065 - MIR SINE MIR -44 218 1 223 231 0 0 chr9 46845482 46845521 -71017106 + polypurine Low_complexity Low_complexity 2 40 0 626 193 11 74 chr9 46846551 46846698 -71015929 + MER106A DNA MER1_type 16 152 -84 1477 116 0 5 chr9 46846698 46846896 -71015731 + AluSx SINE Alu 1 197 -115 626 193 11 74 chr9 46846896 46846924 -71015703 + MER106A DNA MER1_type 152 180 -56 1107 130 0 0 chr9 46847607 46847839 -71014788 + (TA)n Simple_repeat Simple_repeat 1 232 0 215 301 122 0 chr9 46848551 46848674 -71013953 - MIR SINE MIR -8 254 117 1040 211 28 5 chr9 46848758 46848971 -71013656 - Charlie8 DNA MER1_type -2199 218 1 252 0 0 0 chr9 46850793 46850821 -71011806 + (A)n Simple_repeat Simple_repeat 1 28 0 231 36 0 0 chr9 46852059 46852087 -71010540 + (CGCGG)n Simple_repeat Simple_repeat 4 31 0 21 0 0 0 chr9 46852092 46852113 -71010514 + GC_rich Low_complexity Low_complexity 1 21 0 30 93 0 0 chr9 46852192 46852278 -71010349 + GC_rich Low_complexity Low_complexity 1 86 0 308 292 73 29 chr9 46853654 46853791 -71008836 - MIR3 SINE MIR -61 147 5 943 144 20 20 chr9 46854261 46854414 -71008213 + AluJb SINE Alu 129 281 -31 218 245 0 0 chr9 46854677 46854730 -71007897 - MIR SINE MIR -14 248 196 225 238 172 40 chr9 46855440 46855591 -71007036 - L2 LINE L2 0 3313 3143 232 271 14 14 chr9 46856153 46856223 -71006404 + MIR3 SINE MIR 111 180 -28 2360 72 7 13 chr9 46856524 46856830 -71005797 - AluSx SINE Alu -8 304 1 205 149 43 43 chr9 46856967 46857014 -71005613 - MER5A DNA MER1_type -30 159 113 484 243 44 7 chr9 46857573 46857709 -71004918 + L2 LINE L2 3165 3305 -8 803 157 69 19 chr9 46858184 46858343 -71004284 + FRAM SINE Alu 1 166 -10 2060 120 0 20 chr9 46858345 46858644 -71003983 + AluSq SINE Alu 1 293 -20 511 142 19 9 chr9 46859002 46859108 -71003519 + GA-rich Low_complexity Low_complexity 3 109 0 184 294 0 44 chr9 46859531 46859599 -71003028 + L2 LINE L2 3233 3297 -16 1775 113 8 19 chr9 46859895 46860151 -71002476 - AluJo SINE Alu -18 294 42 272 154 0 0 chr9 46860273 46860312 -71002315 - AluJo SINE Alu -263 39 1 742 167 0 8 chr9 46861175 46861289 -71001338 + AluJo/FLAM SINE Alu 3 116 -181 1901 152 0 3 chr9 46861289 46861579 -71001048 + AluSx SINE Alu 21 309 -3 4296 118 24 86 chr9 46861788 46862625 -71000002 + LTR1 LTR ERV1 1 785 0 598 154 34 193 chr9 46862793 46863026 -70999601 + MER21B LTR ERV1 53 248 -615 935 218 158 71 chr9 46863054 46863156 -70999471 + MER21B LTR ERV1 413 505 -358 1930 99 0 27 chr9 46863156 46863418 -70999209 - AluSq SINE Alu -54 259 5 935 218 158 71 chr9 46863418 46863555 -70999072 + MER21B LTR ERV1 505 629 -234 2125 148 0 0 chr9 46863555 46863865 -70998762 + AluJb SINE Alu 1 310 -2 935 218 158 71 chr9 46863865 46864099 -70998528 + MER21B LTR ERV1 629 862 -1 283 243 0 27 chr9 46864180 46864254 -70998373 - L2 LINE L2 -3 3269 3198 252 167 0 0 chr9 46864997 46865045 -70997582 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 348 141 39 4 chr9 46865311 46865381 -70997246 + FLAM_A SINE Alu 80 128 -5 226 174 43 0 chr9 46865400 46865446 -70997181 - L2 LINE L2 -5 3308 3261 386 327 85 35 chr9 46865481 46865741 -70996886 + L2 LINE L2 944 1216 -2098 441 312 112 16 chr9 46865752 46866002 -70996625 + L2 LINE L2 2373 2646 -668 312 203 0 0 chr9 46866277 46866341 -70996286 - L1MC4 LINE L1 -1339 6703 6640 869 173 20 0 chr9 46866349 46866535 -70996092 + FRAM SINE Alu 1 182 0 2181 135 0 0 chr9 46866537 46866848 -70995779 + AluSx SINE Alu 1 311 -1 1036 255 68 0 chr9 46866851 46867102 -70995525 + LTR16C LTR ERVL 224 491 0 1821 174 0 16 chr9 46867245 46867550 -70995077 - AluJb SINE Alu -12 300 1 462 280 120 52 chr9 46867551 46867876 -70994751 + L2 LINE L2 2886 3232 -81 814 129 23 15 chr9 46868128 46868260 -70994367 - MER4A LTR ERV1 0 664 532 1140 105 49 0 chr9 46868263 46868425 -70994202 + MSTA LTR MaLR 259 428 0 395 174 77 103 chr9 46868842 46868898 -70993729 - L1MC5 LINE L1 -28 7933 7877 1828 169 3 3 chr9 46868898 46869199 -70993428 + AluJb SINE Alu 1 301 -11 395 174 77 103 chr9 46869199 46869297 -70993330 - L1MC5 LINE L1 -84 7877 7783 3470 121 70 14 chr9 46869538 46869843 -70992784 + MER4B LTR ERV1 24 311 -299 2032 135 3 30 chr9 46869843 46870147 -70992480 + AluSx SINE Alu 1 296 -16 3470 121 70 14 chr9 46870147 46870397 -70992230 + MER4B LTR ERV1 311 610 0 496 191 29 0 chr9 46870421 46870526 -70992101 - L1MC5 LINE L1 -371 7590 7483 662 221 0 21 chr9 46870664 46870809 -70991818 - FLAM_C SINE Alu 0 143 2 2254 101 3 10 chr9 46871770 46872076 -70990551 - AluSq SINE Alu -9 304 1 333 267 48 0 chr9 46872076 46872181 -70990446 + L2 LINE L2 2100 2209 -1105 643 225 0 0 chr9 46872200 46872320 -70990307 + FRAM SINE Alu 11 130 -46 278 50 25 0 chr9 46872384 46872424 -70990203 + (TTTC)n Simple_repeat Simple_repeat 2 42 0 2131 130 16 0 chr9 46872427 46872734 -70989893 - AluSx SINE Alu 0 312 1 1602 269 47 30 chr9 46872734 46873523 -70989104 + L2 LINE L2 2254 3053 -260 463 307 51 23 chr9 46873895 46874110 -70988517 + MIR SINE MIR 20 240 -22 475 280 0 13 chr9 46874110 46874260 -70988367 - LTR16C LTR ERVL 0 491 344 1520 88 200 8 chr9 46874262 46874512 -70988115 - AluSx SINE Alu 0 302 5 23 33 0 0 chr9 46874816 46874846 -70987781 + AT_rich Low_complexity Low_complexity 1 30 0 558 204 171 0 chr9 46874869 46875021 -70987606 - MER5A DNA MER1_type 0 189 12 226 264 0 42 chr9 46875045 46875117 -70987510 - L2 LINE L2 -17 3255 3187 524 229 37 0 chr9 46875117 46875226 -70987401 + MLT1D LTR MaLR 6 118 -387 1985 143 3 0 chr9 46875240 46875533 -70987094 - AluSx SINE Alu -18 294 1 760 192 0 0 chr9 46875537 46875662 -70986965 - FLAM_C SINE Alu -16 127 3 945 189 117 1 chr9 46875663 46875977 -70986650 + MLT1D LTR MaLR 127 503 -2 405 240 28 98 chr9 46876025 46876067 -70986560 + L1MEc LINE L1 1792 1835 -4561 2287 92 0 10 chr9 46876067 46876359 -70986268 - AluSp SINE Alu -24 289 1 405 240 28 98 chr9 46876359 46876372 -70986255 + L1MEc LINE L1 1835 1847 -4549 2086 103 43 13 chr9 46876372 46876672 -70985955 - AluSc SINE Alu 0 309 1 405 240 28 98 chr9 46876672 46876869 -70985758 + L1MEc LINE L1 1847 2027 -4369 253 292 133 9 chr9 46877039 46877152 -70985475 - L2 LINE L2 -212 3060 2934 1600 212 11 60 chr9 46877251 46877315 -70985312 - MLT1A1 LTR MaLR 0 365 299 1922 145 3 10 chr9 46877315 46877446 -70985181 + AluSx SINE Alu 5 135 -177 2446 84 0 0 chr9 46877446 46877744 -70984883 + AluY SINE Alu 1 298 -13 1922 145 3 10 chr9 46877744 46877902 -70984725 + AluSx SINE Alu 135 292 -20 1600 212 11 60 chr9 46877902 46878219 -70984408 - MLT1A1 LTR MaLR -66 299 3 305 267 53 12 chr9 46878453 46878559 -70984068 + MLT1L LTR MaLR 403 604 0 713 107 50 25 chr9 46878586 46878707 -70983920 - FLAM_C SINE Alu 0 143 20 753 171 0 0 chr9 46879099 46879216 -70983411 + FLAM_C SINE Alu 2 118 -25 2137 123 3 3 chr9 46879220 46879521 -70983106 - AluSx SINE Alu -11 301 1 2058 94 20 7 chr9 46879833 46880131 -70982496 - L1MA4 LINE L1 -220 6080 5779 2071 135 3 35 chr9 46880134 46880445 -70982182 - AluSx SINE Alu -11 301 1 7955 11 1 0 chr9 46880501 46881389 -70981238 + L1HS LINE L1 5266 6154 -1 2091 232 9 96 chr9 46881397 46882089 -70980538 - L1 LINE L1 -823 5323 4787 1964 140 18 0 chr9 46882089 46882374 -70980253 - AluSx SINE Alu -22 290 1 2091 232 9 96 chr9 46882374 46882552 -70980075 - L1 LINE L1 -1359 4787 4595 919 206 0 28 chr9 46882670 46882850 -70979777 + FAM SINE Alu 1 175 0 722 103 0 125 chr9 46883104 46883240 -70979387 - FLAM_C SINE Alu -10 133 15 1297 252 87 44 chr9 46883319 46883661 -70978966 - L1MC4a LINE L1 -1981 5827 5452 847 168 62 19 chr9 46883661 46883822 -70978805 + FAM SINE Alu 1 168 -7 1297 252 87 44 chr9 46883822 46884022 -70978605 - L1MC4a LINE L1 -2356 5452 5262 2063 138 0 0 chr9 46884295 46884592 -70978035 + AluSx SINE Alu 2 298 -14 578 119 0 0 chr9 46884708 46884792 -70977835 - AluJ/FLAM SINE Alu -227 85 2 341 276 128 19 chr9 46884807 46884963 -70977664 - L1MC4a LINE L1 -1907 4239 4067 260 240 40 13 chr9 46884989 46885064 -70977563 - L1ME LINE L1 -527 5594 5518 775 158 104 22 chr9 46885076 46885259 -70977368 - L1MC4a LINE L1 -2102 4044 3847 966 181 32 21 chr9 46885261 46885449 -70977178 - AluJo SINE Alu -2 310 121 1919 160 3 3 chr9 46885457 46885769 -70976858 - AluJb SINE Alu 0 312 1 2279 117 0 0 chr9 46885814 46886121 -70976506 - AluSx SINE Alu -5 307 1 662 101 20 0 chr9 46886174 46886273 -70976354 + AluSp/q SINE Alu 206 306 -7 180 0 0 0 chr9 46886320 46886340 -70976287 + (TTCA)n Simple_repeat Simple_repeat 2 21 0 493 287 216 38 chr9 46886363 46886858 -70975769 - L2 LINE L2 -38 3234 2828 1955 139 21 0 chr9 46886858 46887138 -70975489 - AluJo SINE Alu -26 286 1 493 287 216 38 chr9 46887138 46887449 -70975178 - L2 LINE L2 -444 2828 2284 654 203 0 23 chr9 46888013 46888141 -70974486 + FLAM_A SINE Alu 1 125 -17 297 130 58 0 chr9 46888626 46888695 -70973932 + GA-rich Low_complexity Low_complexity 4 76 0 243 62 0 0 chr9 46888949 46888981 -70973646 + Alu SINE Alu 42 73 -230 772 136 0 8 chr9 46888981 46889106 -70973521 + AluSg/x SINE Alu 176 299 -13 804 145 0 0 chr9 46889106 46889223 -70973404 - AluJo/FLAM SINE Alu -185 117 1 21 0 0 0 chr9 46889451 46889472 -70973155 + AT_rich Low_complexity Low_complexity 1 21 0 847 141 7 22 chr9 46890135 46890270 -70972357 + FLAM_C SINE Alu 1 133 0 1011 188 0 11 chr9 46890433 46890609 -70972018 + FAM SINE Alu 2 175 0 2256 115 3 7 chr9 46891087 46891392 -70971235 + AluSq SINE Alu 1 304 -9 2198 105 20 20 chr9 46891401 46891706 -70970921 + AluSx SINE Alu 1 305 -7 388 295 78 7 chr9 46891707 46891978 -70970649 + L1MC/D LINE L1 2991 3280 -2866 2133 135 0 3 chr9 46892066 46892370 -70970257 + AluSx SINE Alu 1 303 -9 404 190 35 16 chr9 46892613 46892743 -70969884 - MLT1F LTR MaLR -399 168 3 523 250 122 67 chr9 46892743 46892972 -70969655 + L1MC/D LINE L1 3865 4080 -2066 1832 165 3 10 chr9 46892972 46893269 -70969358 + AluJb SINE Alu 3 297 -15 523 250 122 67 chr9 46893269 46893352 -70969275 + L1MC/D LINE L1 4080 4157 -1989 2039 162 3 0 chr9 46893352 46893660 -70968967 - AluSx SINE Alu -3 309 1 523 250 122 67 chr9 46893660 46893782 -70968845 + L1MC/D LINE L1 4157 4324 -1822 897 245 98 36 chr9 46893815 46894169 -70968458 + MSTD LTR MaLR 1 350 -25 266 226 38 0 chr9 46894175 46894228 -70968399 - MER57A LTR ERV1 -68 335 281 * 314 160 0 0 chr9 46894213 46894263 -70968364 + MSTD LTR MaLR 408 457 0 598 215 16 0 chr9 46894316 46894437 -70968190 + FLAM_A SINE Alu 1 123 -10 494 291 58 21 chr9 46894629 46894818 -70967809 + MLT2F LTR ERVL 4 199 -464 651 273 170 11 chr9 46894827 46895098 -70967529 + MLT2F LTR ERVL 303 616 -47 482 266 101 62 chr9 46895212 46896027 -70966600 + L1MC/D LINE L1 4883 5772 -497 840 227 0 0 chr9 46896072 46896226 -70966401 + FRAM SINE Alu 1 154 -22 1434 188 52 57 chr9 46896631 46896998 -70965629 + MLT1A1 LTR MaLR 1 365 0 23 0 0 0 chr9 46898281 46898304 -70964323 + AT_rich Low_complexity Low_complexity 1 23 0 261 0 0 0 chr9 46898635 46898664 -70963963 + (T)n Simple_repeat Simple_repeat 1 29 0 2315 75 0 0 chr9 46899010 46899318 -70963309 + AluY SINE Alu 1 308 0 247 305 11 21 chr9 46899325 46899420 -70963207 + MER5A DNA MER1_type 74 167 -22 474 164 39 19 chr9 46899670 46899774 -70962853 + MIR3 SINE MIR 64 169 -39 2260 110 7 0 chr9 46900433 46900733 -70961894 - AluSx SINE Alu -10 302 1 413 315 81 55 chr9 46900791 46901188 -70961439 - L2 LINE L2 -15 3257 2851 1689 160 0 63 chr9 46901477 46901795 -70960832 - AluJo SINE Alu -14 298 1 22 0 0 0 chr9 46901967 46901989 -70960638 + AT_rich Low_complexity Low_complexity 1 22 0 401 169 34 0 chr9 46901989 46902078 -70960549 - L1MB3 LINE L1 -3 6180 6089 715 248 58 19 chr9 46903040 46903246 -70959381 + MER102a DNA MER1_type 84 297 -33 1969 149 10 0 chr9 46903452 46903741 -70958886 + AluJo SINE Alu 1 292 -20 203 152 65 22 chr9 46904578 46904624 -70958003 - MIR SINE MIR -165 97 50 1461 165 9 63 chr9 46904652 46904691 -70957936 + Charlie1b DNA MER1_type 1 41 -2720 210 71 0 0 chr9 46904691 46904719 -70957908 + (TG)n Simple_repeat Simple_repeat 2 29 0 1461 165 9 63 chr9 46904719 46904785 -70957842 + Charlie1b DNA MER1_type 41 109 -2652 1616 175 29 29 chr9 46904785 46905093 -70957534 - AluJb SINE Alu -4 308 1 1461 165 9 63 chr9 46905093 46905302 -70957325 + Charlie1b DNA MER1_type 109 299 -224 2235 93 7 0 chr9 46905324 46905634 -70956993 - AluSx SINE Alu 0 313 2 304 186 17 0 chr9 46905635 46905694 -70956933 + Charlie1b DNA MER1_type 462 521 -2 31 0 0 0 chr9 46906190 46906221 -70956406 + AT_rich Low_complexity Low_complexity 1 31 0 1876 186 0 0 chr9 46906280 46906587 -70956040 - AluJb SINE Alu -5 307 1 341 283 132 4 chr9 46906835 46907015 -70955612 + MIR SINE MIR 45 256 -6 410 318 67 25 chr9 46907835 46908074 -70954553 + MIR SINE MIR 13 261 -1 1746 184 7 0 chr9 46908522 46908815 -70953812 - AluJo SINE Alu -15 297 3 36 23 0 0 chr9 46908952 46908995 -70953632 + AT_rich Low_complexity Low_complexity 1 43 0 2035 138 0 3 chr9 46908995 46909298 -70953329 - AluSp SINE Alu 0 302 1 754 169 57 0 chr9 46909300 46909424 -70953203 - AluJo/FLAM SINE Alu -170 132 2 606 268 84 3 chr9 46909484 46909768 -70952859 + L1ME3A LINE L1 5352 5658 -512 351 290 145 0 chr9 46909772 46909917 -70952710 + L1ME3A LINE L1 5708 5873 -297 410 227 63 33 chr9 46910020 46910254 -70952373 - MER63A DNA MER1_type 0 210 1 1590 190 3 7 chr9 46910279 46910579 -70952048 - AluJo SINE Alu -11 301 3 356 262 43 21 chr9 46911339 46911480 -70951147 + L1MC4 LINE L1 7221 7364 -678 2443 84 0 0 chr9 46911555 46911852 -70950775 - AluSx SINE Alu -15 297 1 841 270 98 40 chr9 46911854 46912284 -70950343 + L1MC4 LINE L1 7295 7877 -165 2159 138 0 0 chr9 46912284 46912596 -70950031 - AluSq SINE Alu -1 312 1 841 270 98 40 chr9 46912596 46912773 -70949854 + L1MC4 LINE L1 7877 8042 0 190 203 14 14 chr9 46914763 46914832 -70947795 + (TTCA)n Simple_repeat Simple_repeat 1 69 0 196 275 0 0 chr9 46914905 46914945 -70947682 + L2 LINE L2 2440 2479 -835 5048 153 40 16 chr9 46915079 46915909 -70946718 - MER21B LTR ERV1 -13 850 1 2166 113 116 40 chr9 46916550 46916770 -70945857 - MSTA LTR MaLR 0 428 226 2246 119 0 0 chr9 46916770 46917065 -70945562 - AluSx SINE Alu -17 295 1 2166 113 116 40 chr9 46917065 46917242 -70945385 - MSTA LTR MaLR -202 226 1 229 248 114 34 chr9 46917439 46917588 -70945039 + MER104 DNA Tc2 4 164 -16 2342 178 48 14 chr9 46917681 46918165 -70944462 - MLT1D LTR MaLR -3 502 3 2033 133 3 0 chr9 46918904 46919190 -70943437 + AluSx SINE Alu 1 312 0 205 40 0 0 chr9 46919190 46919215 -70943412 + (TAAAA)n Simple_repeat Simple_repeat 4 180 0 1905 149 3 13 chr9 46919385 46919694 -70942933 - AluSp SINE Alu -7 306 1 223 301 153 37 chr9 46919865 46920028 -70942599 - L3 LINE CR1 -8 1569 1388 1873 179 45 11 chr9 46920529 46920882 -70941745 + MLT1A1 LTR MaLR 1 365 0 917 252 57 66 chr9 46921150 46921361 -70941266 - MER102b DNA MER1_type -1113 315 105 1832 154 0 14 chr9 46921361 46921673 -70940954 - AluJb SINE Alu 0 310 3 917 252 57 66 chr9 46921673 46921778 -70940849 - MER102b DNA MER1_type -1323 105 1 254 291 58 0 chr9 46922601 46922687 -70939940 + Charlie8 DNA MER1_type 1 91 -2326 201 74 0 0 chr9 46928063 46928090 -70934537 + (CA)n Simple_repeat Simple_repeat 1 27 0 204 205 0 0 chr9 46928330 46928369 -70934258 + GA-rich Low_complexity Low_complexity 4 42 0 212 222 0 0 chr9 46928464 46928509 -70934118 - L2 LINE L2 -8 3305 3261 208 294 124 51 chr9 46928960 46929137 -70933490 + MIR SINE MIR 73 262 0 1852 139 0 85 chr9 46929995 46930326 -70932301 - AluJb SINE Alu -9 303 1 597 286 98 5 chr9 46930698 46930901 -70931726 - MIR SINE MIR -11 251 30 370 247 0 0 chr9 46931251 46931336 -70931291 - MLT1I LTR MaLR -4 405 321 778 248 93 84 chr9 46931480 46931835 -70930792 - MLT1I LTR MaLR -51 358 1 270 307 44 0 chr9 46933146 46933260 -70929367 - L2 LINE L2 -310 2962 2844 446 319 14 7 chr9 46934330 46934468 -70928159 - L2 LINE L2 0 3272 3134 1406 164 22 93 chr9 46934563 46934782 -70927845 + AluJo SINE Alu 13 203 -109 2307 116 0 0 chr9 46934782 46935085 -70927542 + AluSx SINE Alu 1 303 -9 1406 164 22 93 chr9 46935085 46935188 -70927439 + AluJo SINE Alu 203 312 0 221 204 0 0 chr9 46935298 46935342 -70927285 + MIR SINE MIR 117 160 -102 229 226 32 16 chr9 46935352 46935414 -70927213 - LTR16A1 LTR ERVL -10 447 385 2383 104 0 0 chr9 46935422 46935729 -70926898 + AluSg SINE Alu 1 307 -3 447 152 0 0 chr9 46935740 46935806 -70926821 + AluSp/q SINE Alu 201 266 -47 269 289 0 0 chr9 46936203 46936279 -70926348 + MIR SINE MIR 187 262 0 998 101 29 0 chr9 46936514 46936652 -70925975 - AluY SINE Alu -129 182 41 276 356 34 34 chr9 46936710 46936859 -70925768 - L2 LINE L2 -1 3271 3123 930 113 8 15 chr9 46936895 46937028 -70925599 + AluJo SINE Alu 3 134 -178 298 270 140 0 chr9 46937325 46937425 -70925202 - MER117 DNA MER1_type -83 114 1 2840 123 14 21 chr9 46937764 46938194 -70924433 + MSTA LTR MaLR 2 428 0 321 289 0 25 chr9 46938261 46938382 -70924245 - L2 LINE L2 -940 2374 2257 770 229 57 22 chr9 46938725 46938952 -70923675 + MER112 DNA MER1_type 20 254 -6 504 257 136 14 chr9 46939158 46939372 -70923255 - MIR SINE MIR 0 262 23 1403 270 124 39 chr9 46940549 46940860 -70921767 + MLT1K LTR MaLR 2 285 -303 1831 168 13 7 chr9 46940860 46941158 -70921469 - AluSx SINE Alu -12 300 1 1403 270 124 39 chr9 46941158 46941387 -70921240 + MLT1K LTR MaLR 285 588 0 2278 102 3 0 chr9 46941511 46941829 -70920798 + AluSq SINE Alu 1 313 0 1691 126 47 0 chr9 46941842 46942120 -70920507 + L1MA4A LINE L1 6006 6296 -7 724 269 149 26 chr9 46942340 46942730 -70919897 + LTR33 LTR ERVL 80 517 -4 828 296 59 4 chr9 46943052 46943305 -70919322 + LTR33 LTR ERVL 2 268 -253 444 143 165 60 chr9 46943334 46943467 -70919160 + LTR33 LTR ERVL 368 514 -7 718 301 162 0 chr9 46943876 46944172 -70918455 - MLT1I LTR MaLR -17 392 49 646 214 8 0 chr9 46944177 46944294 -70918333 - FLAM_C SINE Alu -25 118 1 1561 154 11 32 chr9 46944323 46944608 -70918019 - L1MB5 LINE L1 -8 6166 5888 1516 194 4 14 chr9 46945039 46945317 -70917310 - AluJo SINE Alu -16 296 22 695 172 35 0 chr9 46945659 46945775 -70916852 + FLAM_C SINE Alu 6 125 -18 296 354 15 0 chr9 46945922 46946052 -70916575 - MIR3 SINE MIR -6 202 71 2336 98 3 19 chr9 46946093 46946429 -70916198 - AluSx SINE Alu 0 331 1 303 324 40 27 chr9 46946489 46946637 -70915990 + MLT1L LTR MaLR 93 242 -373 593 300 189 36 chr9 46947090 46947567 -70915060 - MLT1K LTR MaLR -12 576 27 347 193 0 5 chr9 46947932 46948097 -70914530 + AluJb SINE Alu 1 250 -52 821 172 49 69 chr9 46948097 46948301 -70914326 + AluJo SINE Alu 86 285 -27 255 283 57 47 chr9 46948338 46948444 -70914183 - MER91A DNA MER1_type 0 196 90 * 392 259 31 124 chr9 46948443 46948636 -70913991 - MER91A DNA MER1_type -20 176 2 1142 106 99 0 chr9 46949452 46949613 -70913014 + AluSc SINE Alu 7 183 -126 599 221 89 6 chr9 46951615 46951773 -70910854 - MER117 DNA MER1_type -26 171 1 226 175 0 0 chr9 46952624 46952664 -70909963 - Alu SINE Alu -8 294 255 292 284 37 0 chr9 46952776 46952885 -70909742 - AluJo SINE Alu -10 292 180 762 172 41 7 chr9 46952887 46953032 -70909595 - AluJo SINE Alu -161 151 2 23 0 0 0 chr9 46953490 46953513 -70909114 + AT_rich Low_complexity Low_complexity 1 23 0 954 226 0 44 chr9 46953524 46953750 -70908877 - MER20 DNA MER1_type -2 217 2 1822 195 25 8 chr9 46953897 46954256 -70908371 + MLT1A1 LTR MaLR 1 365 0 406 320 34 6 chr9 46954421 46954586 -70908041 - MIR SINE MIR -64 144 23 2008 154 0 3 chr9 46954808 46955107 -70907520 - AluSx SINE Alu -14 298 1 30 0 0 0 chr9 46955507 46955537 -70907090 + AT_rich Low_complexity Low_complexity 1 30 0 246 247 65 13 chr9 46955873 46955950 -70906677 - MER117 DNA MER1_type -60 137 57 1040 178 18 0 chr9 46956167 46956336 -70906291 + FAM SINE Alu 1 172 -3 2268 88 0 7 chr9 46956445 46956739 -70905888 + AluSc SINE Alu 2 293 -16 1503 171 4 21 chr9 46957942 46958223 -70904404 - AluJo SINE Alu -1 311 36 1863 245 29 41 chr9 46958644 46959257 -70903370 - L1MC5 LINE L1 -731 7230 6625 850 107 0 0 chr9 46959313 46959425 -70903202 + AluJb SINE Alu 1 112 -200 2287 99 0 3 chr9 46959486 46959778 -70902849 + AluSx SINE Alu 2 292 -20 21 0 0 0 chr9 46960272 46960293 -70902334 + AT_rich Low_complexity Low_complexity 1 21 0 34 0 0 0 chr9 46960888 46960922 -70901705 + AT_rich Low_complexity Low_complexity 1 34 0 235 271 0 0 chr9 46963360 46963419 -70899208 - MIR3 SINE MIR 0 208 150 23 0 0 0 chr9 46964063 46964086 -70898541 + AT_rich Low_complexity Low_complexity 1 23 0 893 94 0 31 chr9 46964087 46964214 -70898413 - FLAM_C SINE Alu -10 123 1 1745 174 4 0 chr9 46964223 46964498 -70898129 - AluJb SINE Alu -23 289 14 1017 183 0 0 chr9 46965615 46965779 -70896848 - AluJb SINE Alu -9 303 140 805 125 0 47 chr9 46965903 46966031 -70896596 - AluJb SINE Alu -189 123 2 2302 100 7 0 chr9 46966514 46966814 -70895813 - AluSp SINE Alu -11 302 1 1798 171 7 0 chr9 46966844 46967136 -70895491 + AluJb SINE Alu 1 294 -18 3089 79 12 7 chr9 46968204 46968622 -70894005 - L1MA1 LINE L1 0 6302 5883 233 349 66 18 chr9 46969088 46969254 -70893373 + L3 LINE CR1 1086 1259 -318 2142 136 0 3 chr9 46969288 46969596 -70893031 - AluSx SINE Alu -5 307 1 181 270 32 0 chr9 46969732 46969795 -70892832 + L2 LINE L2 3200 3264 -8 975 159 14 101 chr9 46969970 46970177 -70892450 + MER5A DNA MER1_type 1 189 0 234 242 0 32 chr9 46971022 46971084 -70891543 + LTR66 LTR ERVL 402 461 -149 198 0 0 0 chr9 46972595 46972617 -70890010 + (TC)n Simple_repeat Simple_repeat 2 23 0 492 245 143 82 chr9 46973917 46974296 -70888331 + MLT1J LTR MaLR 214 511 0 494 273 114 37 chr9 47025713 47026010 -70836617 - L2 LINE L2 -844 2470 2151 282 338 31 12 chr9 47026026 47026186 -70836441 - L2 LINE L2 -1327 1987 1825 427 363 93 19 chr9 47026388 47027115 -70835512 - L2 LINE L2 -2118 1196 332 819 189 82 13 chr9 47027125 47027284 -70835343 + AluJo SINE Alu 121 290 -22 905 219 5 47 chr9 47028553 47028768 -70833859 + MER3 DNA MER1_type 2 207 -2 513 276 0 8 chr9 47028786 47028913 -70833714 + L2 LINE L2 3187 3312 -1 294 29 0 0 chr9 47029121 47029156 -70833471 + (CA)n Simple_repeat Simple_repeat 2 36 0 346 293 123 71 chr9 47030014 47030438 -70832189 - L2 LINE L2 -1 3312 2867 1997 174 0 0 chr9 47031577 47031894 -70830733 + 7SLRNA srpRNA srpRNA 2 318 -2 2358 90 0 13 chr9 47032217 47032527 -70830100 - AluSx SINE Alu -6 306 1 202 268 0 0 chr9 47032807 47032863 -70829764 + CT-rich Low_complexity Low_complexity 4 59 0 818 245 19 33 chr9 47033096 47033308 -70829319 + MIR SINE MIR 21 229 -33 287 217 14 0 chr9 47033454 47033523 -70829104 + MER116 DNA Mariner 7 76 -4 542 247 26 32 chr9 47033539 47033693 -70828934 + MIR SINE MIR 110 262 0 225 0 0 0 chr9 47034027 47034052 -70828575 + (TG)n Simple_repeat Simple_repeat 2 26 0 2166 190 52 56 chr9 47034148 47034684 -70827943 - L1MD3 LINE L1 -2 7993 7460 2870 209 64 16 chr9 47034818 47035506 -70827121 - MER20B DNA MER1_type 0 783 63 360 0 0 0 chr9 47035886 47035926 -70826701 + (CA)n Simple_repeat Simple_repeat 2 41 0 240 111 0 0 chr9 47035988 47036024 -70826603 + (CA)n Simple_repeat Simple_repeat 2 37 0 784 295 70 38 chr9 47036052 47036641 -70825986 + L2 LINE L2 2704 3313 0 785 186 18 36 chr9 47036839 47037006 -70825621 - FRAM SINE Alu -2 174 11 866 254 48 110 chr9 47037444 47037980 -70824647 + L2 LINE L2 2809 3311 -2 239 198 104 98 chr9 47038020 47038159 -70824468 - MIR SINE MIR -69 139 26 26 0 0 0 chr9 47038208 47038234 -70824393 + AT_rich Low_complexity Low_complexity 1 26 0 2246 122 3 0 chr9 47038344 47038648 -70823979 + AluSp SINE Alu 1 305 -8 256 261 0 15 chr9 47040179 47040244 -70822383 + CT-rich Low_complexity Low_complexity 1 64 0 211 263 105 26 chr9 47040744 47040858 -70821769 - L2 LINE L2 -1005 2309 2187 383 307 47 0 chr9 47040993 47041120 -70821507 - MIR SINE MIR -35 227 95 210 37 0 0 chr9 47042108 47042135 -70820492 + (A)n Simple_repeat Simple_repeat 1 27 0 1338 225 36 36 chr9 47042138 47042494 -70820133 + LTR49-int LTR ERV1 1845 2200 -4131 4554 114 1 26 chr9 47042502 47043119 -70819508 + LTR49-int LTR ERV1 195 797 -5961 2295 74 3 7 chr9 47043119 47043404 -70819223 - AluY SINE Alu -16 295 12 4554 114 1 26 chr9 47043404 47043441 -70819186 + LTR49-int LTR ERV1 797 833 -5925 222 337 161 37 chr9 47043730 47044140 -70818487 + L2 LINE L2 2811 3271 -1 574 100 12 0 chr9 47045939 47046019 -70816608 - LTR8 LTR ERV1 -606 85 5 4161 130 76 31 chr9 47046021 47046926 -70815701 + MER4-int LTR ERV1 2736 3681 -2917 * 9026 92 56 24 chr9 47046924 47048351 -70814276 + MER4-int LTR ERV1 3836 5308 -1290 454 138 32 21 chr9 47048453 47048547 -70814080 + L1PB2 LINE L1 6054 6148 -3 397 269 28 35 chr9 47049054 47049195 -70813432 + MIR SINE MIR 72 211 -51 2144 114 10 0 chr9 47049793 47050099 -70812528 - AluSx SINE Alu -3 309 1 245 219 110 12 chr9 47050941 47051023 -70811604 - HAL1 LINE L1 -1175 1332 1243 311 263 114 18 chr9 47051074 47051188 -70811439 - HAL1 LINE L1 -1 2506 2382 335 293 3 59 chr9 47051209 47051395 -70811232 + MLT1H LTR MaLR 3 226 -323 3269 270 133 41 chr9 47051415 47052962 -70809665 - HAL1 LINE L1 -665 1842 153 453 263 45 8 chr9 47052965 47053098 -70809529 - MLT1J1 LTR MaLR -288 158 21 702 257 6 11 chr9 47053331 47053510 -70809117 + MIR SINE MIR 21 198 -64 2718 29 0 3 chr9 47053532 47053844 -70808783 + AluY SINE Alu 1 311 0 192 313 0 31 chr9 47054296 47054360 -70808267 + MIR3 SINE MIR 1 62 -146 904 195 43 0 chr9 47054880 47055044 -70807583 - AluJb SINE Alu 0 312 142 314 229 59 42 chr9 47055181 47055299 -70807328 - L1M3b LINE L1 -6161 120 1 391 278 35 17 chr9 47055508 47055623 -70807004 + MIR SINE MIR 34 150 -58 2041 110 0 72 chr9 47056110 47056428 -70806199 + AluSg SINE Alu 5 299 -11 24 24 0 24 chr9 47057010 47057023 -70805604 + AT_rich Low_complexity Low_complexity 1 13 -28 1700 169 3 36 chr9 47057023 47057324 -70805303 - AluJo SINE Alu -20 292 2 24 24 0 24 chr9 47057324 47057352 -70805275 + AT_rich Low_complexity Low_complexity 13 41 0 930 147 0 0 chr9 47057550 47057693 -70804934 - AluSp/q SINE Alu -3 310 168 613 147 0 194 chr9 47057914 47058125 -70804502 + MER53 DNA DNA 2 171 -18 820 193 31 19 chr9 47058321 47058482 -70804145 - AluJb SINE Alu 0 312 150 753 212 34 68 chr9 47059146 47059410 -70803217 - MER112 DNA MER1_type 0 256 2 645 322 29 0 chr9 47059660 47059865 -70802762 + MIR SINE MIR 49 259 -3 517 279 60 37 chr9 47060224 47060439 -70802188 + MIR SINE MIR 36 255 -7 375 296 51 0 chr9 47060549 47060647 -70801980 - L2 LINE L2 -1 3271 3169 276 312 72 0 chr9 47062792 47062917 -70799710 + MLT1K LTR MaLR 438 571 -17 2139 119 0 13 chr9 47063036 47063347 -70799280 - AluSg1 SINE Alu -2 307 1 307 86 122 0 chr9 47064153 47064292 -70798335 + (TA)n Simple_repeat Simple_repeat 1 156 0 244 317 0 0 chr9 47064298 47064358 -70798269 + MIR SINE MIR 13 72 -190 338 234 283 7 chr9 47064469 47064614 -70798013 + MIR SINE MIR 78 262 0 862 223 47 51 chr9 47065648 47065863 -70796764 + MER20 DNA MER1_type 1 214 -5 388 313 11 34 chr9 47066389 47066568 -70796059 - MIR SINE MIR 0 262 88 1823 128 67 0 chr9 47066766 47067048 -70795579 + AluSx SINE Alu 1 301 -11 24 0 0 0 chr9 47067407 47067431 -70795196 + AT_rich Low_complexity Low_complexity 1 24 0 1433 189 7 146 chr9 47067736 47067823 -70794804 + MLT1A1 LTR MaLR 1 98 -267 502 68 0 0 chr9 47067823 47067909 -70794718 + L1PA7 LINE L1 6078 6163 0 1433 189 7 146 chr9 47067909 47068244 -70794383 + MLT1A1 LTR MaLR 98 365 0 212 121 0 0 chr9 47068244 47068277 -70794350 + MIR SINE MIR 117 149 -113 183 42 0 0 chr9 47068435 47068459 -70794168 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 194 61 0 30 chr9 47069575 47069608 -70793019 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 339 211 92 0 chr9 47070672 47070748 -70791879 - MER20 DNA MER1_type -3 216 134 384 136 0 0 chr9 47070803 47070869 -70791758 - L1MA4 LINE L1 -8 6292 6227 482 195 18 104 chr9 47070869 47071033 -70791594 - MER20 DNA MER1_type -69 150 1 478 273 162 0 chr9 47071051 47071205 -70791422 + MER5A DNA MER1_type 11 189 0 949 180 24 0 chr9 47071459 47071626 -70791001 - MER3 DNA MER1_type -29 180 10 212 346 59 26 chr9 47072027 47072180 -70790447 - MIR SINE MIR -31 231 74 775 164 94 53 chr9 47072377 47072548 -70790079 + MER5B DNA MER1_type 1 178 0 780 249 12 0 chr9 47072647 47072820 -70789807 - MER5A DNA MER1_type -6 183 9 215 161 37 49 chr9 47072897 47072978 -70789649 + (TGGG)n Simple_repeat Simple_repeat 1 80 0 * 248 289 0 0 chr9 47072926 47073016 -70789611 + G-rich Low_complexity Low_complexity 1 90 0 1142 165 71 9 chr9 47073162 47073374 -70789253 + MER4A LTR ERV1 438 662 -2 8540 200 30 5 chr9 47073377 47075243 -70787384 + L1 LINE L1 3345 5256 -890 21 36 0 0 chr9 47077319 47077347 -70785280 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr9 47078073 47078095 -70784532 + AT_rich Low_complexity Low_complexity 1 22 0 336 284 52 17 chr9 47079148 47079264 -70783363 - MIR3 SINE MIR -3 205 86 2273 98 3 7 chr9 47079827 47080132 -70782495 + AluSq SINE Alu 9 312 -1 1969 118 17 3 chr9 47080613 47080901 -70781726 - AluSx SINE Alu -6 306 15 2465 88 0 0 chr9 47082028 47082335 -70780292 + AluSq SINE Alu 1 307 -6 235 253 44 55 chr9 47082601 47082692 -70779935 - L2 LINE L2 -3 3269 3180 21 0 0 0 chr9 47082823 47082844 -70779783 + AT_rich Low_complexity Low_complexity 1 21 0 298 309 121 27 chr9 47082943 47083092 -70779535 - MER5A DNA MER1_type -10 179 17 2092 203 56 40 chr9 47084707 47085275 -70777352 - Charlie1a DNA MER1_type 0 1455 879 833 195 0 0 chr9 47085285 47085444 -70777183 + FAM SINE Alu 1 49 0 649 118 274 0 chr9 47085445 47085580 -70777047 - Charlie1a DNA MER1_type -560 895 724 2906 221 20 15 chr9 47085716 47086375 -70776252 - Charlie1a DNA MER1_type -793 662 1 2083 125 0 14 chr9 47086397 47086694 -70775933 - AluSx SINE Alu -12 300 8 185 91 0 30 chr9 47086908 47086941 -70775686 + (GA)n Simple_repeat Simple_repeat 1 32 0 1914 202 17 6 chr9 47087452 47087813 -70774814 - MLT1A1 LTR MaLR 0 365 1 1752 183 3 7 chr9 47088115 47088426 -70774201 + AluJb SINE Alu 1 310 0 524 61 50 55 chr9 47088591 47088772 -70773855 + (TA)n Simple_repeat Simple_repeat 1 180 0 22 0 0 0 chr9 47089166 47089188 -70773439 + AT_rich Low_complexity Low_complexity 1 22 0 535 277 34 0 chr9 47089899 47090047 -70772580 - MIR SINE MIR -72 190 38 994 166 0 6 chr9 47090066 47090223 -70772404 + AluJo SINE Alu 2 157 -155 184 319 14 109 chr9 47090329 47090467 -70772160 + MER5B DNA MER1_type 5 129 -49 2149 112 0 17 chr9 47091088 47091405 -70771222 - AluSx SINE Alu 0 312 1 1173 186 30 66 chr9 47091405 47091706 -70770921 - L1MA9 LINE L1 -58 6254 5965 189 74 0 0 chr9 47092376 47092403 -70770224 + (TG)n Simple_repeat Simple_repeat 1 27 0 2237 116 0 0 chr9 47092813 47093116 -70769511 - AluSg SINE Alu -7 303 1 606 262 78 86 chr9 47093134 47093508 -70769119 + L2 LINE L2 2872 3242 -71 436 250 28 9 chr9 47093631 47093739 -70768888 + MIR SINE MIR 13 122 -140 182 295 33 16 chr9 47093776 47093837 -70768790 + L2 LINE L2 3201 3262 -10 189 0 0 0 chr9 47094602 47094623 -70768004 + (A)n Simple_repeat Simple_repeat 1 21 0 824 203 43 21 chr9 47095103 47095290 -70767337 - MER20 DNA MER1_type 0 219 29 32 57 0 0 chr9 47095870 47095923 -70766704 + AT_rich Low_complexity Low_complexity 1 53 0 353 262 157 12 chr9 47096081 47096253 -70766374 - L1M4 LINE L1 -2339 3807 3611 394 282 136 37 chr9 47096664 47096760 -70765867 - L1M4 LINE L1 -2882 3264 3179 1726 187 0 3 chr9 47096760 47097049 -70765578 - AluJo SINE Alu -24 288 1 394 282 136 37 chr9 47097049 47097275 -70765352 - L1M4 LINE L1 -2967 3179 2910 416 269 6 0 chr9 47097366 47097541 -70765086 + (TA)n Simple_repeat Simple_repeat 1 176 0 642 267 71 11 chr9 47097559 47097769 -70764858 - L1ME4a LINE L1 -280 5841 5617 342 45 0 0 chr9 47097918 47097962 -70764665 + (TCCC)n Simple_repeat Simple_repeat 4 47 0 842 158 0 33 chr9 47097968 47098152 -70764475 + CT-rich Low_complexity Low_complexity 2 179 0 1648 131 117 4 chr9 47098157 47098431 -70764196 - AluJb SINE Alu -1 311 7 618 253 29 18 chr9 47099175 47099345 -70763282 - L2 LINE L2 -17 3296 3125 1675 117 40 4 chr9 47099648 47099897 -70762730 - L1PB2 LINE L1 -2 6149 5892 829 279 126 6 chr9 47100590 47100956 -70761671 + L1MEc LINE L1 1793 2202 -4194 241 0 103 0 chr9 47101879 47101918 -70760709 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 304 235 54 87 chr9 47103053 47103202 -70759425 - L1ME4a LINE L1 0 6121 5978 1124 50 0 7 chr9 47103207 47103347 -70759280 + MER107 DNA MER1_type 7 145 -52 209 83 28 0 chr9 47103347 47103383 -70759244 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 557 271 53 39 chr9 47103454 47103735 -70758892 - L1ME4a LINE L1 -203 5918 5634 284 367 0 0 chr9 47105583 47105681 -70756946 + MIR3 SINE MIR 88 185 -23 2469 53 0 0 chr9 47105834 47106119 -70756508 - AluY SINE Alu -21 290 6 401 358 48 22 chr9 47106521 47106750 -70755877 + MIR SINE MIR 22 256 -6 482 276 80 49 chr9 47107036 47107261 -70755366 - MIR SINE MIR -12 250 19 224 324 20 39 chr9 47107310 47107412 -70755215 - MIR SINE MIR -157 105 6 268 336 0 49 chr9 47107416 47107538 -70755089 + L2 LINE L2 3151 3266 -6 412 237 91 75 chr9 47109148 47109274 -70753353 + L2 LINE L2 2504 2635 -679 2262 101 14 0 chr9 47109274 47109571 -70753056 + AluSx SINE Alu 1 301 -11 412 237 91 75 chr9 47109571 47109630 -70752997 + L2 LINE L2 2635 2692 -622 * 589 306 26 44 chr9 47109620 47109849 -70752778 + MIR SINE MIR 6 230 -32 2784 110 51 5 chr9 47109950 47110359 -70752268 + MSTA LTR MaLR 1 428 0 355 285 296 0 chr9 47110877 47111048 -70751579 - MIR SINE MIR -26 236 16 209 319 84 38 chr9 47111081 47111319 -70751308 - L2 LINE L2 -655 2659 2411 2075 132 0 0 chr9 47111338 47111627 -70751000 - AluSx SINE Alu -23 289 1 207 0 0 0 chr9 47112566 47112589 -70750038 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2069 127 0 0 chr9 47112592 47112875 -70749752 - AluSx SINE Alu -29 283 1 181 358 124 7 chr9 47114417 47114554 -70748073 - MIR SINE MIR -33 229 77 210 37 0 0 chr9 47115634 47115661 -70746966 + (TG)n Simple_repeat Simple_repeat 2 28 0 765 135 0 48 chr9 47116427 47116553 -70746074 - FLAM_C SINE Alu -17 126 7 252 0 0 0 chr9 47117279 47117307 -70745320 + (CA)n Simple_repeat Simple_repeat 2 29 0 234 103 69 23 chr9 47117747 47117834 -70744793 + (TATAA)n Simple_repeat Simple_repeat 4 94 0 182 277 184 21 chr9 47117838 47117877 -70744750 + MIR SINE MIR 69 100 -162 1852 163 0 10 chr9 47117877 47118183 -70744444 - AluJo SINE Alu -9 303 1 182 277 184 21 chr9 47118183 47118284 -70744343 + MIR SINE MIR 100 232 -30 239 211 42 70 chr9 47118383 47118454 -70744173 + MIR3 SINE MIR 118 186 -22 22 0 0 0 chr9 47118526 47118548 -70744079 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr9 47119109 47119132 -70743495 + AT_rich Low_complexity Low_complexity 1 23 0 311 245 123 66 chr9 47120343 47120645 -70741982 + L1ME4a LINE L1 5801 6119 -2 372 303 106 8 chr9 47120916 47121048 -70741579 + MIR SINE MIR 48 192 -70 1137 186 59 0 chr9 47121268 47121489 -70741138 - L1MB1 LINE L1 -9 6159 5926 3062 277 108 21 chr9 47121585 47122835 -70739792 + L2 LINE L2 1728 3082 -231 285 291 101 0 chr9 47122825 47122904 -70739723 - L2 LINE L2 -29 3284 3198 * 565 290 103 30 chr9 47122885 47123147 -70739480 + L2 LINE L2 3031 3311 -2 459 324 56 9 chr9 47124330 47124543 -70738084 + MIR SINE MIR 3 225 -37 489 314 149 18 chr9 47124629 47125017 -70737610 - L2 LINE L2 0 3313 2875 269 284 78 26 chr9 47125762 47125878 -70736749 + MIR SINE MIR 72 193 -69 853 172 7 7 chr9 47126383 47126528 -70736099 + MER5B DNA MER1_type 34 178 0 5002 37 0 7 chr9 47126798 47127397 -70735230 + L1PA5 LINE L1 5560 6154 0 233 258 11 67 chr9 47129551 47129640 -70732987 - L2 LINE L2 -2 3270 3187 330 224 137 63 chr9 47129702 47129808 -70732819 + MIR SINE MIR 34 164 -98 496 234 47 8 chr9 47129808 47129936 -70732691 + MER94 DNA DNA 2 134 0 330 224 137 63 chr9 47129936 47129977 -70732650 + MIR SINE MIR 164 201 -61 993 158 11 5 chr9 47130345 47130535 -70732092 + L1PBa LINE L1 4 194 -6669 10048 162 38 12 chr9 47130535 47132050 -70730577 + L1PBa LINE L1 996 2470 -4392 207 69 0 0 chr9 47132050 47132079 -70730548 + (CAA)n Simple_repeat Simple_repeat 2 30 0 10048 162 38 12 chr9 47132079 47132911 -70729716 + L1PBa LINE L1 2470 3279 -3583 828 20 0 0 chr9 47132911 47133010 -70729617 + L1PA3 LINE L1 6056 6154 -1 10048 162 38 12 chr9 47133010 47134184 -70728443 + L1PBa LINE L1 3279 4815 -2047 1837 139 3 78 chr9 47134184 47134516 -70728111 - AluSx SINE Alu -5 307 1 10048 162 38 12 chr9 47134516 47134967 -70727660 + L1PBa LINE L1 4815 5253 -1609 327 228 17 29 chr9 47135067 47135315 -70727312 + CT-rich Low_complexity Low_complexity 1 244 0 1789 135 79 22 chr9 47138711 47139029 -70723598 + MER1A DNA MER1_type 1 336 -193 311 297 251 11 chr9 47139541 47139716 -70722911 + MIR SINE MIR 22 238 -24 747 262 18 50 chr9 47139729 47139809 -70722818 - MIR SINE MIR -42 220 139 1485 173 49 52 chr9 47139809 47140115 -70722512 - AluJo SINE Alu -7 305 1 747 262 18 50 chr9 47140115 47140255 -70722372 - MIR SINE MIR -123 139 7 482 240 102 68 chr9 47142211 47142435 -70720192 - MIR SINE MIR -5 257 8 1872 113 65 51 chr9 47142692 47143062 -70719565 - THE1C LTR MaLR 0 375 1 229 300 80 0 chr9 47143449 47143549 -70719078 + MIR3 SINE MIR 71 178 -30 231 361 0 0 chr9 47144121 47144204 -70718423 + T-rich Low_complexity Low_complexity 1 83 0 1961 22 0 0 chr9 47144578 47144809 -70717818 + L1PA2 LINE L1 5925 6155 0 588 225 93 6 chr9 47144810 47144992 -70717635 + L1ME3A LINE L1 5963 6160 -10 297 100 0 0 chr9 47145006 47145056 -70717571 + (A)n Simple_repeat Simple_repeat 1 50 0 237 83 0 0 chr9 47146108 47146144 -70716483 - MADE1 DNA Mariner -44 36 1 2060 116 0 64 chr9 47146310 47146639 -70715988 - AluSq SINE Alu -5 308 1 217 360 0 23 chr9 47147646 47147732 -70714895 - L2 LINE L2 -8 3264 3181 1246 130 6 0 chr9 47147785 47147954 -70714673 + AluSg/x SINE Alu 125 294 -18 191 111 0 28 chr9 47148499 47148535 -70714092 + (TTTTC)n Simple_repeat Simple_repeat 4 38 0 234 313 25 80 chr9 47149581 47149744 -70712883 - L2 LINE L2 0 3313 3160 216 0 0 0 chr9 47150027 47150051 -70712576 + (TAA)n Simple_repeat Simple_repeat 2 25 0 24 67 0 0 chr9 47150145 47150190 -70712437 + AT_rich Low_complexity Low_complexity 1 45 0 206 209 0 0 chr9 47152544 47152587 -70710040 - MIR SINE MIR -10 252 210 213 65 0 0 chr9 47152988 47153019 -70709608 + (TG)n Simple_repeat Simple_repeat 2 32 0 207 0 0 0 chr9 47153948 47153971 -70708656 + (CAA)n Simple_repeat Simple_repeat 2 24 0 411 307 72 18 chr9 47153985 47154151 -70708476 - MER5A DNA MER1_type -2 187 13 321 189 0 0 chr9 47154873 47154926 -70707701 - MER5A DNA MER1_type -3 186 134 1354 110 42 8 chr9 47154930 47155167 -70707460 + L1MA8 LINE L1 6037 6281 -10 604 231 31 0 chr9 47155217 47155347 -70707280 - MER5A DNA MER1_type -54 135 2 480 261 33 17 chr9 47156423 47156434 -70706193 + MER117 DNA MER1_type 5 14 -183 2343 144 44 33 chr9 47156434 47156863 -70705764 - Tigger2a DNA MER2_type 0 434 1 480 261 33 17 chr9 47156863 47157031 -70705596 + MER117 DNA MER1_type 14 187 -10 619 271 179 5 chr9 47157559 47157777 -70704850 - MIR SINE MIR -6 256 1 1936 133 7 23 chr9 47158379 47158679 -70703948 + AluJb SINE Alu 1 295 -17 567 200 139 0 chr9 47158680 47158845 -70703782 + MER3 DNA MER1_type 18 205 -4 246 218 36 0 chr9 47158806 47158861 -70703766 - MER3 DNA MER1_type -119 90 34 * 788 219 22 70 chr9 47158972 47159200 -70703427 - L2 LINE L2 0 3313 3097 339 355 0 1 chr9 47159499 47159608 -70703019 + MIR SINE MIR 36 143 -65 494 320 52 16 chr9 47160080 47160274 -70702353 - MIR SINE MIR 0 262 62 535 122 0 24 chr9 47160681 47160763 -70701864 - AluJ/FLAM SINE Alu -228 84 5 422 134 158 6 chr9 47161258 47161362 -70701265 - L1MA7 LINE L1 0 6291 6186 572 140 0 0 chr9 47161392 47161492 -70701135 + L1PA16 LINE L1 6067 6166 0 221 333 151 30 chr9 47161492 47161929 -70700698 - L2 LINE L2 -238 3034 2550 285 301 96 14 chr9 47161955 47162101 -70700526 - MIR SINE MIR -52 210 53 425 195 0 0 chr9 47162173 47162250 -70700377 - AluJ/FLAM SINE Alu -235 77 1 657 275 54 98 chr9 47162877 47163416 -70699211 + MLT1H1 LTR MaLR 43 557 -33 292 232 43 0 chr9 47163490 47163559 -70699068 + L2 LINE L2 3201 3272 0 744 279 71 21 chr9 47163861 47164101 -70698526 - MIR SINE MIR -3 259 8 1884 155 7 10 chr9 47165271 47165580 -70697047 - AluSx SINE Alu -4 308 1 352 272 48 0 chr9 47165758 47165861 -70696766 + MIR SINE MIR 79 186 -76 612 231 134 41 chr9 47165934 47166203 -70696424 + MER113 DNA MER1_type? 226 519 -2 577 332 72 36 chr9 47166700 47167246 -70695381 + L2 LINE L2 2704 3271 -1 1702 167 32 4 chr9 47167380 47167661 -70694966 - AluJb SINE Alu -23 289 1 498 235 12 6 chr9 47169869 47170007 -70692620 - MIR SINE MIR -10 252 115 16066 86 11 3 chr9 47170910 47174713 -70687914 - L1PA7 LINE L1 -4 6150 2379 272 48 24 0 chr9 47174713 47174755 -70687872 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 16066 86 11 3 chr9 47174755 47175222 -70687405 - L1PA7 LINE L1 -3775 2379 1835 2406 74 14 0 chr9 47175222 47175519 -70687108 + AluSp SINE Alu 1 301 -12 16066 86 11 3 chr9 47175519 47175754 -70686873 - L1PA7 LINE L1 -4319 1835 1603 210 270 190 44 chr9 47175909 47176046 -70686581 - MIR SINE MIR -98 164 8 185 320 8 64 chr9 47177424 47177549 -70685078 + L2 LINE L2 1242 1359 -1955 570 314 109 25 chr9 47177555 47177680 -70684947 - L1M4 LINE L1 -870 5276 5163 1933 170 3 31 chr9 47177680 47177765 -70684862 - MER7A DNA MER2_type -2692 346 260 2139 108 20 10 chr9 47177765 47178061 -70684566 - AluSx SINE Alu -13 299 1 1933 170 3 31 chr9 47178061 47178333 -70684294 - MER7A DNA MER2_type -2778 260 1 570 314 109 25 chr9 47178333 47178805 -70683822 - L1M4 LINE L1 -983 5163 4629 459 0 0 0 chr9 47178838 47178889 -70683738 + (CA)n Simple_repeat Simple_repeat 1 51 0 315 296 43 41 chr9 47179398 47179743 -70682884 - L1M4 LINE L1 -3597 2549 2204 1313 181 69 69 chr9 47181706 47182009 -70680618 + AluJo SINE Alu 3 305 -7 2034 187 17 0 chr9 47182056 47182415 -70680212 - MLT1A1 LTR MaLR 0 365 1 930 214 33 14 chr9 47183113 47183323 -70679304 - MER58C DNA MER1_type 0 215 2 180 111 0 0 chr9 47183711 47183738 -70678889 + (TGAA)n Simple_repeat Simple_repeat 3 29 0 185 297 218 20 chr9 47183932 47184033 -70678594 + MIR SINE MIR 33 153 -109 225 0 0 0 chr9 47184505 47184530 -70678097 + (TC)n Simple_repeat Simple_repeat 2 26 0 210 267 12 58 chr9 47184718 47184804 -70677823 + MIR SINE MIR 171 252 -10 637 273 129 5 chr9 47185484 47185693 -70676934 + MIR SINE MIR 27 261 -1 377 296 74 11 chr9 47185744 47185920 -70676707 - MIR SINE MIR -56 206 20 2242 106 13 10 chr9 47186436 47186748 -70675879 - AluSq SINE Alu 0 313 1 31 26 0 0 chr9 47186934 47186972 -70675655 + AT_rich Low_complexity Low_complexity 1 38 0 200 361 69 0 chr9 47187685 47187815 -70674812 + L2 LINE L2 2920 3058 -214 182 302 8 78 chr9 47187997 47188126 -70674501 - MIR SINE MIR -64 198 79 1632 115 58 11 chr9 47188216 47188494 -70674133 + L1MA5A LINE L1 6004 6294 -3 328 211 58 10 chr9 47188578 47188682 -70673945 - L1ME4a LINE L1 -175 5946 5838 32 26 0 0 chr9 47188723 47188762 -70673865 + AT_rich Low_complexity Low_complexity 1 39 0 5740 140 16 18 chr9 47188816 47190426 -70672201 - L1PB1 LINE L1 -1 6150 4541 347 97 0 16 chr9 47190528 47190590 -70672037 + (GA)n Simple_repeat Simple_repeat 2 62 0 542 201 89 56 chr9 47190675 47190889 -70671738 - MER58 DNA MER1_type 0 2420 2200 403 223 108 14 chr9 47190877 47191025 -70671602 - MER58 DNA MER1_type -2232 188 27 * 1696 181 10 13 chr9 47191076 47191374 -70671253 + AluJb SINE Alu 1 297 -15 407 176 11 0 chr9 47191374 47191465 -70671162 + (TA)n Simple_repeat Simple_repeat 1 92 0 1508 196 99 0 chr9 47191619 47191951 -70670676 + MER47A DNA MER2_type 2 366 0 1617 212 40 0 chr9 47192782 47193107 -70669520 - MER2 DNA MER2_type 0 345 8 226 288 68 0 chr9 47193153 47193226 -70669401 + MIR SINE MIR 155 232 -30 1958 151 0 13 chr9 47194750 47195048 -70667579 + AluJo SINE Alu 1 294 -18 1937 169 0 0 chr9 47195954 47196256 -70666371 - AluJb SINE Alu -8 304 3 603 300 77 21 chr9 47198280 47198368 -70664259 - MIR SINE MIR -15 247 165 2176 133 67 40 chr9 47198368 47198789 -70663838 + Tigger2a DNA MER2_type 2 433 -1 603 300 77 21 chr9 47198789 47198933 -70663694 - MIR SINE MIR -97 165 2 410 276 15 37 chr9 47198949 47199083 -70663544 + MER94 DNA DNA 4 134 0 947 204 11 27 chr9 47199834 47200020 -70662607 - MER5A DNA MER1_type -1 188 6 1045 214 18 18 chr9 47200182 47200406 -70662221 - MER58A DNA MER1_type 0 224 1 237 33 0 0 chr9 47200937 47200967 -70661660 + (A)n Simple_repeat Simple_repeat 1 30 0 438 192 0 58 chr9 47201118 47201222 -70661405 + L2 LINE L2 1927 2024 -1290 305 183 0 0 chr9 47201229 47201289 -70661338 + MER34C LTR ERV1 37 96 -489 2379 72 10 7 chr9 47201346 47201653 -70660974 - AluY SINE Alu -3 308 1 713 225 142 74 chr9 47201694 47201952 -70660675 + MER34B LTR ERV1 77 316 -249 1746 143 47 11 chr9 47201952 47202267 -70660360 + AluSx SINE Alu 1 312 0 713 225 142 74 chr9 47202267 47202466 -70660161 + MER34B LTR ERV1 316 565 0 403 287 8 8 chr9 47202471 47202600 -70660027 + L2 LINE L2 2034 2162 -1152 297 329 71 6 chr9 47202629 47202799 -70659828 + L2 LINE L2 3044 3224 -89 224 221 26 39 chr9 47203072 47203149 -70659478 + G-rich Low_complexity Low_complexity 6 81 0 228 100 0 0 chr9 47203149 47203189 -70659438 + (GA)n Simple_repeat Simple_repeat 1 40 0 2105 44 4 0 chr9 47203217 47203466 -70659161 + AluY SINE Alu 61 310 -1 2076 104 7 0 chr9 47204315 47204636 -70657991 + AluSg SINE Alu 1 310 0 319 319 35 35 chr9 47205495 47205611 -70657016 - L2 LINE L2 -21 3251 3136 649 185 0 0 chr9 47206801 47206909 -70655718 + Tigger3(Golem) DNA MER2_type 1 108 -2921 * 4031 112 58 21 chr9 47206900 47207623 -70655004 + Tigger3(Golem) DNA MER2_type 2278 3027 -2 183 295 103 13 chr9 47208458 47208536 -70654091 + L2 LINE L2 3186 3270 -2 591 299 46 14 chr9 47208619 47208836 -70653791 + MIR SINE MIR 20 243 -19 309 300 0 0 chr9 47209418 47209508 -70653119 + MIR SINE MIR 173 262 0 208 328 35 70 chr9 47210895 47211066 -70651561 + MIR3 SINE MIR 2 166 -42 2479 157 35 20 chr9 47211125 47211577 -70651050 + L1PA16 LINE L1 5707 6165 -1 559 248 233 0 chr9 47211620 47211830 -70650797 + MIR SINE MIR 4 262 0 317 152 30 0 chr9 47212748 47212814 -70649813 + CT-rich Low_complexity Low_complexity 4 71 0 23 68 0 0 chr9 47212989 47213033 -70649594 + AT_rich Low_complexity Low_complexity 1 44 0 456 310 81 10 chr9 47213133 47213504 -70649123 - L1ME LINE L1 -296 5825 5389 310 295 9 18 chr9 47213505 47213617 -70649010 - L1ME LINE L1 -2444 5364 5254 724 312 110 14 chr9 47214995 47215440 -70647187 + MLT1J LTR MaLR 20 507 -4 30 83 0 0 chr9 47215720 47215792 -70646835 + AT_rich Low_complexity Low_complexity 1 72 0 247 335 171 0 chr9 47216649 47216801 -70645826 + L3b LINE CR1 1247 1424 -159 365 255 84 17 chr9 47217041 47217197 -70645430 - MER20B DNA MER1_type -21 198 29 189 74 0 0 chr9 47218277 47218304 -70644323 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 623 145 0 65 chr9 47218306 47218430 -70644197 - AluSq/x SINE Alu -197 116 1 365 202 106 10 chr9 47218629 47218733 -70643894 - MIR SINE MIR -69 193 80 476 206 22 29 chr9 47219140 47219276 -70643351 + L1MC5 LINE L1 7724 7858 -103 26 64 0 0 chr9 47219288 47219335 -70643292 + AT_rich Low_complexity Low_complexity 1 47 0 201 277 0 0 chr9 47219396 47219443 -70643184 - L2 LINE L2 -12 3301 3255 29 0 0 0 chr9 47219473 47219502 -70643125 + AT_rich Low_complexity Low_complexity 1 29 0 203 200 0 77 chr9 47219519 47219584 -70643043 + MIR SINE MIR 71 130 -132 980 309 115 3 chr9 47219697 47220088 -70642539 + L2 LINE L2 1071 1505 -1809 208 282 64 55 chr9 47220122 47220232 -70642395 + L2 LINE L2 2099 2209 -1105 230 259 49 37 chr9 47220265 47220346 -70642281 + L2 LINE L2 2458 2539 -775 1457 157 0 43 chr9 47220348 47220648 -70641979 + L1MB3 LINE L1 5897 6183 0 333 0 0 0 chr9 47220661 47220698 -70641929 + (TG)n Simple_repeat Simple_repeat 2 38 0 189 107 0 0 chr9 47221040 47221068 -70641559 + (CA)n Simple_repeat Simple_repeat 1 28 0 639 249 22 28 chr9 47221069 47221250 -70641377 + L2 LINE L2 2543 2722 -592 487 277 110 71 chr9 47221331 47221696 -70640931 + L2 LINE L2 2935 3313 0 2472 79 0 0 chr9 47222323 47222626 -70640001 - AluSg SINE Alu -7 303 1 528 205 27 9 chr9 47222991 47223103 -70639524 + MER81 DNA DNA 1 114 0 211 292 88 71 chr9 47223725 47223838 -70638789 - MER91A DNA MER1_type -36 160 46 23 0 0 0 chr9 47226601 47226624 -70636003 + AT_rich Low_complexity Low_complexity 1 23 0 448 322 99 35 chr9 47226646 47226847 -70635780 - MIR SINE MIR -48 214 4 222 220 0 0 chr9 47227251 47227301 -70635326 + L2 LINE L2 3264 3313 0 419 304 220 0 chr9 47228600 47228768 -70633859 + MIR SINE MIR 52 256 -6 21 36 0 0 chr9 47229177 47229205 -70633422 + AT_rich Low_complexity Low_complexity 1 28 0 938 216 21 0 chr9 47229381 47229575 -70633052 + MER105 DNA DNA 6 203 -1 1574 92 67 0 chr9 47229637 47229859 -70632768 + L1MA1 LINE L1 6037 6278 -24 318 26 0 0 chr9 47229859 47229898 -70632729 + (TA)n Simple_repeat Simple_repeat 1 39 0 1574 92 67 0 chr9 47229898 47229915 -70632712 + L1MA1 LINE L1 6278 6292 -10 2317 11 0 0 chr9 47229939 47230204 -70632423 + L1PA3 LINE L1 5889 6153 -2 255 317 37 0 chr9 47230690 47230772 -70631855 + MIR SINE MIR 18 102 -106 258 286 0 14 chr9 47231357 47231427 -70631200 - MIR SINE MIR -7 255 187 1636 207 154 25 chr9 47232398 47232782 -70629845 + MLT1F1 LTR MaLR 69 518 -49 2322 176 42 2 chr9 47232782 47233192 -70629435 + MSTB LTR MaLR 1 426 0 1636 207 154 25 chr9 47233192 47233247 -70629380 + MLT1F1 LTR MaLR 518 565 -2 489 279 76 13 chr9 47233511 47233669 -70628958 + MIR SINE MIR 54 221 -41 344 321 208 5 chr9 47233738 47233950 -70628677 + MIR SINE MIR 8 262 0 1024 333 105 15 chr9 47234080 47234871 -70627756 + L2 LINE L2 1531 2392 -922 1015 168 16 28 chr9 47236140 47236440 -70626187 + MLT1A1 LTR MaLR 5 365 0 183 286 24 24 chr9 47236505 47236589 -70626038 - L2 LINE L2 -217 3055 2972 254 274 16 0 chr9 47237124 47237186 -70625441 - L2 LINE L2 -9 3263 3201 268 311 0 10 chr9 47238492 47238595 -70624032 + GA-rich Low_complexity Low_complexity 2 103 0 736 148 4 0 chr9 47239389 47239521 -70623106 + L1ME LINE L1 5653 5785 -381 382 45 0 60 chr9 47239524 47239591 -70623036 + (TA)n Simple_repeat Simple_repeat 1 63 0 1867 164 47 0 chr9 47239624 47239965 -70622662 + L1PB4 LINE L1 5782 6138 -18 243 0 0 0 chr9 47242329 47242356 -70620271 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2256 105 0 0 chr9 47243144 47243439 -70619188 - AluSq SINE Alu -18 295 1 1185 298 87 51 chr9 47245483 47246587 -70616040 + L1MEd LINE L1 304 1345 -4786 252 260 73 21 chr9 47247385 47247481 -70615146 - MIR3 SINE MIR -33 175 75 422 202 198 20 chr9 47247547 47247690 -70614937 - MER5A DNA MER1_type -6 183 6 283 260 80 30 chr9 47251869 47251969 -70610658 + MIR3 SINE MIR 15 119 -89 422 291 8 24 chr9 47251980 47252107 -70610520 + MER5B DNA MER1_type 2 126 -52 1030 226 106 0 chr9 47252952 47253169 -70609458 + MER45C DNA AcHobo 1 240 -713 506 358 75 18 chr9 47253166 47253392 -70609235 + MER45C DNA AcHobo 362 600 -353 * 318 250 0 0 chr9 47253410 47253466 -70609161 + MER45C DNA AcHobo 898 953 0 280 366 93 0 chr9 47253640 47253812 -70608815 + MIR SINE MIR 75 262 0 413 333 136 14 chr9 47254364 47254577 -70608050 - MIR SINE MIR -10 252 14 683 266 68 5 chr9 47254655 47254862 -70607765 - MIR SINE MIR -36 226 7 292 345 122 25 chr9 47255071 47255268 -70607359 - MIR SINE MIR -27 235 20 295 248 112 48 chr9 47255472 47255597 -70607030 - MARNA DNA Mariner -366 220 88 217 237 13 53 chr9 47256171 47256247 -70606380 + GA-rich Low_complexity Low_complexity 2 74 0 276 336 94 0 chr9 47256937 47257086 -70605541 - MIR SINE MIR -86 176 14 227 258 30 0 chr9 47258035 47258101 -70604526 - MIR SINE MIR -119 143 76 261 119 0 0 chr9 47258755 47258797 -70603830 + (A)n Simple_repeat Simple_repeat 1 42 0 458 243 0 10 chr9 47260841 47260944 -70601683 + MIR SINE MIR 84 185 -77 236 333 135 0 chr9 47261078 47261219 -70601408 + MIR SINE MIR 55 214 -48 520 274 171 0 chr9 47261228 47261374 -70601253 - MIR SINE MIR -90 172 2 22 35 0 0 chr9 47262213 47262242 -70600385 + AT_rich Low_complexity Low_complexity 1 29 0 521 299 111 4 chr9 47264931 47265175 -70597452 + L1ME4a LINE L1 5633 5902 -219 21 0 0 0 chr9 47265182 47265203 -70597424 + AT_rich Low_complexity Low_complexity 1 21 0 810 189 19 13 chr9 47266497 47266656 -70595971 - MER58B DNA MER1_type -1 340 181 697 272 116 28 chr9 47266773 47267093 -70595534 + L2 LINE L2 2878 3225 -88 199 308 122 66 chr9 47267724 47268010 -70594617 + L2 LINE L2 2676 2977 -337 26 0 0 0 chr9 47268604 47268630 -70593997 + AT_rich Low_complexity Low_complexity 1 26 0 262 336 77 0 chr9 47268737 47268880 -70593747 - MIR SINE MIR -60 202 49 234 0 0 0 chr9 47269982 47270008 -70592619 + (CA)n Simple_repeat Simple_repeat 2 27 0 187 271 57 29 chr9 47270589 47270659 -70591968 - L2 LINE L2 0 3313 3242 225 191 128 96 chr9 47270704 47270798 -70591829 - MER5C DNA MER1_type 0 324 228 516 156 104 0 chr9 47270829 47270925 -70591702 - MER5C DNA MER1_type -203 121 16 393 242 0 21 chr9 47270934 47271029 -70591598 + MER5A DNA MER1_type 10 102 -87 612 256 37 21 chr9 47271155 47271346 -70591281 - MIR SINE MIR -10 252 59 247 340 19 10 chr9 47271742 47271845 -70590782 + L2 LINE L2 3169 3272 0 335 139 14 0 chr9 47273262 47273334 -70589293 - L1MA4 LINE L1 -2 6298 6226 243 222 33 78 chr9 47275924 47276014 -70586613 - MIR SINE MIR -132 130 45 234 318 30 38 chr9 47277011 47277143 -70585484 - MER5A DNA MER1_type -28 161 31 192 285 83 62 chr9 47277014 47277158 -70585469 + MER5A DNA MER1_type 43 189 0 * 1079 153 36 54 chr9 47277367 47277590 -70585037 - MER20 DNA MER1_type 0 219 1 2251 127 0 0 chr9 47278832 47279139 -70583488 - AluSq SINE Alu -4 309 3 360 0 0 0 chr9 47280539 47280579 -70582048 + (TG)n Simple_repeat Simple_repeat 2 41 0 1075 261 53 143 chr9 47281011 47282013 -70580614 + HAL1 LINE L1 2 913 -1594 320 117 28 61 chr9 47282096 47282276 -70580351 + (TA)n Simple_repeat Simple_repeat 1 174 0 590 255 137 32 chr9 47282287 47283097 -70579530 + HAL1 LINE L1 950 1876 -631 1615 41 0 0 chr9 47283158 47283353 -70579274 + L1PA5 LINE L1 5953 6147 -7 411 432 62 42 chr9 47283395 47283779 -70578848 + HAL1 LINE L1 2115 2506 -1 436 313 87 15 chr9 47283901 47284103 -70578524 - MIR SINE MIR -19 243 26 33 0 0 0 chr9 47284684 47284717 -70577910 + AT_rich Low_complexity Low_complexity 1 33 0 364 208 0 14 chr9 47286698 47286770 -70575857 - L2 LINE L2 -8 3305 3235 198 352 158 15 chr9 47287121 47287317 -70575310 + MIR SINE MIR 38 261 -1 2335 110 0 0 chr9 47288292 47288601 -70574026 + AluSg SINE Alu 1 309 -1 280 348 78 0 chr9 47289549 47289690 -70572937 + L2 LINE L2 3162 3313 0 188 250 0 0 chr9 47289851 47289887 -70572740 - L3 LINE CR1 -7 1570 1535 1050 103 0 0 chr9 47290047 47290192 -70572435 + AluSg/x SINE Alu 165 309 -3 26 30 0 0 chr9 47290318 47290351 -70572276 + AT_rich Low_complexity Low_complexity 1 33 0 242 228 88 0 chr9 47292515 47292572 -70570055 - L2 LINE L2 -39 3233 3172 26 0 0 0 chr9 47293764 47293790 -70568837 + AT_rich Low_complexity Low_complexity 1 26 0 1711 169 3 3 chr9 47293790 47294074 -70568553 + AluJb SINE Alu 23 306 -6 449 206 31 0 chr9 47295091 47295188 -70567439 - MER103 DNA DNA -48 118 19 29 60 0 0 chr9 47295320 47295370 -70567257 + AT_rich Low_complexity Low_complexity 1 50 0 1239 204 82 7 chr9 47295568 47295848 -70566779 - AluJo SINE Alu -10 302 2 2189 122 0 0 chr9 47296448 47296759 -70565868 + AluSq SINE Alu 1 311 -2 2756 191 30 71 chr9 47296945 47297388 -70565239 - MER82 DNA MER2_type -13 640 231 3042 161 4 4 chr9 47297388 47297910 -70564717 - L1PA16 LINE L1 -17 6149 5628 2756 191 30 71 chr9 47297910 47298132 -70564495 - MER82 DNA MER2_type -422 231 2 531 254 14 0 chr9 47298340 47298482 -70564145 + L1ME3A LINE L1 4465 4608 -1538 1058 276 68 8 chr9 47298512 47298997 -70563630 + L1ME3A LINE L1 4698 5211 -935 2188 266 68 31 chr9 47299470 47299599 -70563028 + L1ME3A LINE L1 5301 5424 -746 435 113 127 0 chr9 47299599 47299670 -70562957 - MADE1 DNA Mariner 0 80 1 2188 266 68 31 chr9 47299670 47300345 -70562282 + L1ME3A LINE L1 5424 6135 -35 396 232 0 20 chr9 47300554 47300653 -70561974 - MIR SINE MIR -21 241 145 650 353 62 42 chr9 47301083 47301675 -70560952 + L2 LINE L2 2036 2639 -675 473 282 24 0 chr9 47302655 47302815 -70559812 - L1MA10 LINE L1 -7 6318 5994 1464 161 31 105 chr9 47303860 47304252 -70558375 + MLT1A1 LTR MaLR 3 365 0 10539 114 40 10 chr9 47304402 47305125 -70557502 + L1M1 LINE L1 1582 2281 -5284 2297 82 0 26 chr9 47305125 47305431 -70557196 - AluY SINE Alu -13 298 1 10539 114 40 10 chr9 47305431 47306363 -70556264 + L1M1 LINE L1 2281 3288 -4277 326 298 34 58 chr9 47306599 47306804 -70555823 + L1ME LINE L1 5383 5582 -539 4509 186 30 6 chr9 47307357 47308680 -70553947 + L1M1 LINE L1 3286 4646 -2919 2365 100 0 0 chr9 47309328 47309627 -70553000 + AluSq SINE Alu 1 299 -14 220 301 157 0 chr9 47310041 47310124 -70552503 + L2 LINE L2 3134 3229 -43 329 215 13 0 chr9 47312217 47312296 -70550331 - L1ME4a LINE L1 -3 6118 6039 180 0 0 0 chr9 47312553 47312573 -70550054 + (CA)n Simple_repeat Simple_repeat 2 21 0 * 234 0 0 0 chr9 47312572 47312598 -70550029 + (TC)n Simple_repeat Simple_repeat 2 27 0 432 200 0 0 chr9 47312598 47312688 -70549939 + (CATA)n Simple_repeat Simple_repeat 2 91 0 396 204 0 75 chr9 47312688 47312781 -70549846 - L1MC4 LINE L1 -1339 6703 6618 916 186 24 52 chr9 47312804 47313014 -70549613 + MER20 DNA MER1_type 1 204 -15 582 290 112 14 chr9 47313152 47313438 -70549189 - L1ME4a LINE L1 -293 5828 5515 210 71 0 0 chr9 47313678 47313706 -70548921 + (GGAGAA)n Simple_repeat Simple_repeat 4 31 0 421 290 6 68 chr9 47316870 47317046 -70545581 + MIR SINE MIR 20 184 -78 2222 108 3 0 chr9 47317969 47318264 -70544363 - AluSx SINE Alu -11 301 6 35 0 0 0 chr9 47318264 47318299 -70544328 + AT_rich Low_complexity Low_complexity 1 35 0 236 182 55 18 chr9 47318729 47318784 -70543843 - MIR SINE MIR -79 183 127 223 274 32 0 chr9 47318986 47319048 -70543579 + MIR SINE MIR 196 259 -3 27 0 0 0 chr9 47319645 47319672 -70542955 + AT_rich Low_complexity Low_complexity 1 27 0 270 143 0 0 chr9 47321073 47321122 -70541505 + (CCTG)n Simple_repeat Simple_repeat 2 50 0 449 283 17 25 chr9 47321128 47321248 -70541379 - L2 LINE L2 -20 3252 3134 1702 329 123 26 chr9 47321505 47322777 -70539850 - L2 LINE L2 -515 2799 1404 251 256 318 16 chr9 47323262 47323391 -70539236 + MIR SINE MIR 20 187 -75 22 0 0 0 chr9 47323395 47323417 -70539210 + AT_rich Low_complexity Low_complexity 1 22 0 200 255 124 62 chr9 47326041 47326186 -70536441 + MIR3 SINE MIR 49 202 -6 22 35 0 0 chr9 47326313 47326342 -70536285 + AT_rich Low_complexity Low_complexity 1 29 0 348 370 29 16 chr9 47327075 47327321 -70535306 + L2 LINE L2 1873 2121 -1193 2464 61 0 19 chr9 47327443 47327756 -70534871 + AluY SINE Alu 5 311 0 479 315 11 11 chr9 47328908 47329089 -70533538 - MIR SINE MIR -30 232 52 602 295 121 63 chr9 47329232 47329646 -70532981 - L2 LINE L2 -1 3312 2875 1942 188 37 36 chr9 47329827 47330381 -70532246 + MLT2A2 LTR ERVL 1 554 0 344 237 75 11 chr9 47331428 47331521 -70531106 + MIR SINE MIR 17 115 -147 281 325 0 25 chr9 47331609 47331689 -70530938 + MER5A DNA MER1_type 112 189 0 2020 129 0 35 chr9 47332534 47332851 -70529776 - AluSx SINE Alu -6 306 1 201 232 29 29 chr9 47333202 47333271 -70529356 + CT-rich Low_complexity Low_complexity 5 73 0 417 180 40 40 chr9 47333816 47333916 -70528711 + MER5B DNA MER1_type 79 178 0 205 304 0 43 chr9 47334111 47334180 -70528447 + L2 LINE L2 3247 3312 -1 235 299 94 24 chr9 47334197 47334324 -70528303 + MIR SINE MIR 120 255 -7 820 176 0 0 chr9 47334920 47335051 -70527576 - FRAM SINE Alu -24 152 22 480 294 164 9 chr9 47335071 47335197 -70527430 + MIR SINE MIR 2 107 -155 273 57 0 0 chr9 47335197 47335232 -70527395 + (TAA)n Simple_repeat Simple_repeat 2 36 0 480 294 164 9 chr9 47335232 47335319 -70527308 + MIR SINE MIR 107 248 -14 1899 262 69 24 chr9 47335389 47336087 -70526540 - L1ME3A LINE L1 -64 6106 5354 25 0 0 0 chr9 47337044 47337069 -70525558 + AT_rich Low_complexity Low_complexity 1 25 0 217 296 74 68 chr9 47337795 47337957 -70524670 - L2 LINE L2 0 3313 3151 24 0 0 0 chr9 47337976 47338000 -70524627 + AT_rich Low_complexity Low_complexity 1 24 0 850 146 8 0 chr9 47338000 47338123 -70524504 - FLAM_C SINE Alu -17 126 3 752 171 63 44 chr9 47338313 47338471 -70524156 - FRAM SINE Alu -5 161 1 2107 143 0 0 chr9 47340216 47340516 -70522111 - AluSx SINE Alu -12 300 1 197 358 62 0 chr9 47341387 47341468 -70521159 - L2 LINE L2 -38 3234 3149 274 340 44 29 chr9 47341565 47341771 -70520856 - L2 LINE L2 -397 2917 2709 458 338 5 72 chr9 47344317 47344539 -70518088 - MIR SINE MIR -26 236 30 198 0 0 0 chr9 47345171 47345193 -70517434 + (T)n Simple_repeat Simple_repeat 1 22 0 1489 185 7 11 chr9 47345478 47345754 -70516873 + AluJo SINE Alu 1 275 -37 21 0 0 0 chr9 47345876 47345897 -70516730 + AT_rich Low_complexity Low_complexity 1 21 0 2310 112 0 10 chr9 47345903 47346217 -70516410 - AluSx SINE Alu -1 311 1 207 0 0 0 chr9 47346839 47346862 -70515765 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1877 14 0 0 chr9 47347329 47347544 -70515083 - L1PA3 LINE L1 -596 5559 5345 4884 34 7 0 chr9 47347544 47348120 -70514507 + L1PA3 LINE L1 5570 6155 0 2428 167 63 8 chr9 47349911 47350384 -70512243 + MLT1D LTR MaLR 5 503 -2 199 324 20 54 chr9 47350607 47350755 -70511872 + L2 LINE L2 3158 3300 -13 346 339 91 0 chr9 47351328 47351493 -70511134 + MIR SINE MIR 13 192 -70 1270 132 112 37 chr9 47351496 47351738 -70510889 - Tigger7 DNA MER2_type 0 2491 2232 627 279 27 47 chr9 47352292 47352593 -70510034 + L1ME3A LINE L1 5871 6165 -5 221 308 23 83 chr9 47352597 47352730 -70509897 - MIR SINE MIR -136 126 2 239 341 130 16 chr9 47353154 47353277 -70509350 + L2 LINE L2 3136 3272 0 26 0 0 0 chr9 47354067 47354093 -70508534 + AT_rich Low_complexity Low_complexity 1 26 0 1904 161 0 37 chr9 47354457 47354806 -70507821 - L1P LINE L1 -2220 3926 3591 5960 100 18 10 chr9 47354806 47355853 -70506774 + L1PA13 LINE L1 5103 6158 -5 23 33 0 0 chr9 47355899 47355929 -70506698 + AT_rich Low_complexity Low_complexity 1 30 0 29 28 0 0 chr9 47356338 47356374 -70506253 + AT_rich Low_complexity Low_complexity 1 36 0 240 264 104 19 chr9 47356835 47356941 -70505686 - MIR SINE MIR -64 198 84 2710 94 5 19 chr9 47357729 47358382 -70504245 + L1PA7 LINE L1 4907 6146 -8 310 145 0 0 chr9 47358380 47358442 -70504185 + L1MC3 LINE L1 7563 7624 -161 * 23 0 0 0 chr9 47358464 47358487 -70504140 + AT_rich Low_complexity Low_complexity 1 23 0 492 266 130 6 chr9 47358539 47358708 -70503919 + MIR SINE MIR 5 194 -68 216 0 0 0 chr9 47358708 47358732 -70503895 + (TA)n Simple_repeat Simple_repeat 1 24 0 248 250 0 0 chr9 47358844 47358892 -70503735 - MIR SINE MIR -168 94 47 409 337 74 6 chr9 47358985 47359160 -70503467 + MIR SINE MIR 20 206 -56 635 255 153 0 chr9 47359895 47360111 -70502516 + MER46C DNA MER2_type 47 295 -43 3606 160 45 78 chr9 47360749 47361611 -70501016 + L1MB7 LINE L1 5351 6184 0 517 260 100 0 chr9 47362523 47362673 -70499954 - MER63A DNA MER1_type -28 182 18 780 242 94 33 chr9 47413760 47414004 -70448623 + MIR SINE MIR 2 260 -2 184 262 97 68 chr9 47414005 47414108 -70448519 + MIR SINE MIR 34 139 -123 2325 85 0 0 chr9 47414280 47414585 -70448042 - AluY SINE Alu -6 305 1 3003 229 68 12 chr9 47414612 47415362 -70447265 - MER21B LTR ERV1 -60 803 12 199 159 23 0 chr9 47416424 47416468 -70446159 - L2 LINE L2 0 3313 3269 1340 206 63 38 chr9 47416832 47417197 -70445430 - MLT1A2 LTR MaLR 0 374 1 351 0 0 0 chr9 47417219 47417258 -70445369 + (CA)n Simple_repeat Simple_repeat 1 39 0 189 107 0 0 chr9 47417525 47417553 -70445074 + (GA)n Simple_repeat Simple_repeat 2 29 0 393 320 121 43 chr9 47418037 47418221 -70444406 + L2 LINE L2 1610 1778 -1536 2084 132 0 0 chr9 47418221 47418517 -70444110 - AluSg SINE Alu -14 296 1 393 320 121 43 chr9 47418517 47418844 -70443783 + L2 LINE L2 1778 2161 -1153 210 343 40 0 chr9 47418882 47418981 -70443646 + L2 LINE L2 2271 2373 -941 2154 217 75 0 chr9 47419011 47419531 -70443096 - MER89 LTR ERV1 0 559 1 262 366 72 7 chr9 47419571 47419724 -70442903 + MIR SINE MIR 2 164 -98 1039 217 22 16 chr9 47420128 47420406 -70442221 + MLT1D LTR MaLR 196 503 -2 274 314 25 8 chr9 47420969 47421090 -70441537 + MLT1L LTR MaLR 489 611 -4 344 285 56 76 chr9 47421159 47421303 -70441324 - L2 LINE L2 -9 3263 3123 837 179 4 93 chr9 47421414 47421596 -70441031 + MER97b DNA MER1_type? 76 232 -821 1483 176 28 38 chr9 47421596 47421886 -70440741 + AluJo SINE Alu 1 287 -25 837 179 4 93 chr9 47421886 47421949 -70440678 + MER97b DNA MER1_type? 232 299 -754 302 336 26 0 chr9 47422058 47422174 -70440453 - MIR SINE MIR -91 171 53 732 201 6 35 chr9 47422402 47422576 -70440051 + MER3 DNA MER1_type 1 122 -87 392 20 0 0 chr9 47423066 47423116 -70439511 + MADE1 DNA Mariner 31 80 0 35 41 0 0 chr9 47423341 47423390 -70439237 + AT_rich Low_complexity Low_complexity 1 49 0 242 306 194 19 chr9 47423793 47423901 -70438726 + MIR SINE MIR 17 143 -119 1634 214 85 64 chr9 47424054 47424663 -70437964 + MLT1E3 LTR MaLR 3 624 0 609 262 59 39 chr9 47425423 47425679 -70436948 - MIR SINE MIR 0 262 2 272 333 38 90 chr9 47426567 47426684 -70435943 + L2 LINE L2 2596 2717 -555 1704 194 70 25 chr9 47426684 47427169 -70435458 + Charlie4a DNA MER1_type 2 508 0 272 333 38 90 chr9 47427169 47427541 -70435086 + L2 LINE L2 2717 3064 -208 437 208 132 0 chr9 47427942 47428048 -70434579 - L2 LINE L2 -3 3310 3191 1084 188 10 14 chr9 47428050 47428258 -70434369 + MER3 DNA MER1_type 1 207 -2 1776 303 96 18 chr9 47428395 47429244 -70433383 - L2 LINE L2 -254 3059 2144 633 109 0 0 chr9 47429245 47429337 -70433290 + AluSg/x SINE Alu 218 309 0 262 287 147 78 chr9 47429643 47429772 -70432855 + MIR SINE MIR 38 175 -33 188 317 0 79 chr9 47429820 47429921 -70432706 - MIR SINE MIR -157 105 13 21 0 0 0 chr9 47430005 47430026 -70432601 + AT_rich Low_complexity Low_complexity 1 21 0 227 319 143 0 chr9 47431196 47431315 -70431312 + L2 LINE L2 3136 3271 -1 2250 88 10 0 chr9 47432393 47432687 -70429940 - AluY SINE Alu -14 297 1 358 238 93 13 chr9 47433266 47433415 -70429212 - L1MCa LINE L1 -1339 6983 1995 301 273 0 11 chr9 47433387 47433475 -70429152 - L1MCa LINE L1 -4363 2063 1977 * 1613 196 59 9 chr9 47433528 47433865 -70428762 - L1MC1 LINE L1 0 6727 6374 447 306 94 38 chr9 47437230 47437465 -70425162 + L2 LINE L2 2810 3057 -215 643 266 72 65 chr9 47437933 47438365 -70424262 - L1MC4 LINE L1 -137 7905 7471 2068 219 31 18 chr9 47438404 47438912 -70423715 - L1MC1 LINE L1 -1932 6270 5756 3624 244 32 50 chr9 47439682 47440319 -70422308 + L1MA6 LINE L1 2081 2728 -4837 2035 127 10 0 chr9 47440319 47440610 -70422017 + AluSp SINE Alu 1 294 -19 3624 244 32 50 chr9 47440610 47441780 -70420847 + L1MA6 LINE L1 2728 3781 -3784 2496 62 0 7 chr9 47441780 47442089 -70420538 + AluY SINE Alu 1 307 -4 1311 98 0 0 chr9 47442092 47442265 -70420362 + AluSp SINE Alu 141 313 0 13293 165 28 39 chr9 47442300 47443759 -70418868 + L1MA6 LINE L1 3795 5268 -2451 2144 123 0 7 chr9 47443759 47444067 -70418560 + AluSx SINE Alu 1 306 -6 13293 165 28 39 chr9 47444067 47445583 -70417044 + L1MA6 LINE L1 5268 6799 -920 183 42 0 0 chr9 47445583 47445607 -70417020 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 13293 165 28 39 chr9 47445607 47446111 -70416516 + L1MA6 LINE L1 6799 7240 -479 384 22 0 0 chr9 47446111 47446156 -70416471 + (CA)n Simple_repeat Simple_repeat 2 46 0 13293 165 28 39 chr9 47446156 47446631 -70415996 + L1MA6 LINE L1 7240 7719 0 27 0 0 0 chr9 47446635 47446662 -70415965 + AT_rich Low_complexity Low_complexity 1 27 0 371 306 93 69 chr9 47446698 47446965 -70415662 - L1MC1 LINE L1 -816 5724 5465 1855 170 3 10 chr9 47446965 47447277 -70415350 - AluJb SINE Alu -2 310 1 371 306 93 69 chr9 47447277 47449331 -70413296 - L1MC1 LINE L1 -1075 5465 3327 315 337 24 16 chr9 47449820 47450079 -70412548 - L1MC1 LINE L1 -3784 2756 2491 1689 88 5 0 chr9 47451109 47451324 -70411303 + AluSc SINE Alu 1 216 -93 3508 154 62 16 chr9 47451410 47451423 -70411204 - L1MB3 LINE L1 -9 6174 6163 281 26 26 0 chr9 47451423 47451461 -70411166 + (TG)n Simple_repeat Simple_repeat 2 40 0 3508 154 62 16 chr9 47451461 47452154 -70410473 - L1MB3 LINE L1 -20 6163 5435 2026 262 89 34 chr9 47452437 47455396 -70407231 + L1ME3A LINE L1 2153 5418 -821 1595 159 10 45 chr9 47455396 47455685 -70406942 + AluJo SINE Alu 21 299 -13 2026 262 89 34 chr9 47455685 47456547 -70406080 + L1ME3A LINE L1 5418 6231 -8 307 272 73 63 chr9 47457041 47457232 -70405395 + HAL1 LINE L1 2254 2446 -61 4825 202 33 47 chr9 47457236 47457604 -70405023 + L1MD2 LINE L1 4644 5016 -1343 1584 198 3 13 chr9 47457604 47457907 -70404720 + AluJo SINE Alu 1 300 -12 4825 202 33 47 chr9 47457907 47457942 -70404685 + L1MD2 LINE L1 5016 5050 -1309 730 62 0 0 chr9 47457942 47458038 -70404589 + L1PA8 LINE L1 6075 6170 -2 4825 202 33 47 chr9 47458038 47459364 -70403263 + L1MD2 LINE L1 5050 6337 -22 581 264 111 28 chr9 47459707 47459923 -70402704 + MIR SINE MIR 4 237 -25 769 137 0 40 chr9 47460830 47460954 -70401673 + MER4-int LTR ERV1 290 408 -6190 12878 201 53 8 chr9 47460963 47464389 -70398238 + L1PA13 LINE L1 1 3630 -3167 23 0 0 0 chr9 47465400 47465423 -70397204 + AT_rich Low_complexity Low_complexity 1 23 0 2100 117 0 20 chr9 47465476 47465776 -70396851 + AluSq SINE Alu 3 296 -17 24 32 0 0 chr9 47465828 47465859 -70396768 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr9 47466300 47466328 -70396299 + AT_rich Low_complexity Low_complexity 1 28 0 324 241 116 54 chr9 47466384 47466496 -70396131 - L2 LINE L2 0 3272 3154 192 398 78 8 chr9 47466574 47466702 -70395925 + MIR SINE MIR 100 236 -26 21 36 0 0 chr9 47466785 47466813 -70395814 + AT_rich Low_complexity Low_complexity 1 28 0 765 43 73 0 chr9 47467138 47467302 -70395325 + (TA)n Simple_repeat Simple_repeat 2 177 0 243 0 101 29 chr9 47467333 47467402 -70395225 + (TA)n Simple_repeat Simple_repeat 1 74 0 4784 172 26 2 chr9 47468508 47469353 -70393274 - MER6 DNA MER2_type 0 865 1 757 234 27 32 chr9 47469783 47469971 -70392656 - MER63A DNA MER1_type 0 210 24 204 158 0 0 chr9 47470026 47470064 -70392563 + (TATG)n Simple_repeat Simple_repeat 2 39 0 1973 132 7 3 chr9 47470631 47470949 -70391678 + AluSx SINE Alu 7 312 0 180 0 0 0 chr9 47471174 47471194 -70391433 + (T)n Simple_repeat Simple_repeat 1 20 0 269 321 21 64 chr9 47473429 47473569 -70389058 - MIR3 SINE MIR -15 193 60 355 276 18 37 chr9 47473647 47473810 -70388817 + CT-rich Low_complexity Low_complexity 1 160 0 611 272 316 27 chr9 47473810 47474111 -70388516 - L2 LINE L2 0 3272 2885 257 358 97 22 chr9 47474331 47474557 -70388070 + MIR SINE MIR 2 244 -18 231 200 183 0 chr9 47474909 47474969 -70387658 + MIR SINE MIR 102 172 -90 2151 212 138 40 chr9 47475744 47476555 -70386072 + L1MC4 LINE L1 7152 8042 0 248 328 29 75 chr9 47477142 47477316 -70385311 - MIR SINE MIR 0 262 97 577 269 11 63 chr9 47478831 47479006 -70383621 + MER5A DNA MER1_type 2 167 -22 188 380 114 33 chr9 47479022 47479512 -70383115 + L2 LINE L2 1862 2391 -923 2464 61 0 0 chr9 47479865 47480162 -70382465 - AluY SINE Alu -14 297 1 194 61 0 30 chr9 47480270 47480303 -70382324 + (TTA)n Simple_repeat Simple_repeat 2 33 0 980 95 0 0 chr9 47480306 47480432 -70382195 - AluSg/x SINE Alu -30 282 157 256 285 85 69 chr9 47480601 47480731 -70381896 + L2 LINE L2 3141 3272 0 327 250 74 0 chr9 47481045 47481153 -70381474 + MER103 DNA DNA 3 118 -48 2080 84 27 37 chr9 47481181 47481477 -70381150 - AluSg1 SINE Alu -16 293 1 21 0 0 0 chr9 47482593 47482614 -70380013 + AT_rich Low_complexity Low_complexity 1 21 0 489 17 0 0 chr9 47483003 47483061 -70379566 + (CA)n Simple_repeat Simple_repeat 1 58 0 329 336 19 0 chr9 47483085 47483189 -70379438 + L2 LINE L2 3208 3313 0 434 82 12 118 chr9 47483268 47483353 -70379274 + MADE1 DNA Mariner 2 77 -3 337 310 17 52 chr9 47484931 47485100 -70377527 + MIR SINE MIR 3 165 -69 540 165 10 0 chr9 47485101 47485198 -70377429 + L1MB1 LINE L1 6062 6159 -9 328 309 76 7 chr9 47486541 47486694 -70375933 - MIR SINE MIR -57 205 44 308 319 0 18 chr9 47487202 47487315 -70375312 - MIR SINE MIR -104 158 48 285 282 49 21 chr9 47487552 47487694 -70374933 + MER117 DNA MER1_type 3 148 -49 243 0 0 0 chr9 47488288 47488315 -70374312 + (A)n Simple_repeat Simple_repeat 1 27 0 183 241 17 17 chr9 47488635 47488693 -70373934 - MIR SINE MIR -85 123 66 249 309 64 18 chr9 47489301 47489411 -70373216 - MIR3 SINE MIR -12 196 82 536 282 21 49 chr9 47489938 47490202 -70372425 + MIR SINE MIR 3 258 -4 397 317 122 0 chr9 47491143 47491323 -70371304 - MIR SINE MIR -5 257 56 2221 131 27 3 chr9 47491691 47492064 -70370563 + MLT1B LTR MaLR 1 382 -8 276 298 153 0 chr9 47492738 47492862 -70369765 - MIR SINE MIR -3 259 117 399 218 141 39 chr9 47493878 47494034 -70368593 + MER57A LTR ERV1 3 174 -229 434 252 48 15 chr9 47494035 47494204 -70368423 + MER93a LTR ERV1 225 398 -5 351 0 0 0 chr9 47494209 47494248 -70368379 + (T)n Simple_repeat Simple_repeat 1 39 0 366 331 60 24 chr9 47494519 47494685 -70367942 + L3 LINE CR1 932 1103 -474 1787 176 20 55 chr9 47494694 47495097 -70367530 + MLT2C1 LTR ERVL 1 389 -8 910 307 70 14 chr9 47495098 47495515 -70367112 + L3 LINE CR1 1117 1556 -21 282 319 122 13 chr9 47495531 47495757 -70366870 - MIR SINE MIR -4 258 8 218 346 131 76 chr9 47495975 47496449 -70366178 - L2 LINE L2 0 3313 2814 2379 198 20 27 chr9 47496581 47497136 -70365491 + MER68 LTR ERV1 12 562 0 1932 203 15 10 chr9 47497805 47498199 -70364428 + MSTD LTR MaLR 1 396 0 393 272 68 0 chr9 47502415 47502562 -70360065 - L1ME4a LINE L1 0 6121 5965 364 324 73 53 chr9 47502648 47502895 -70359732 + MIR SINE MIR 1 252 -10 235 330 132 0 chr9 47503021 47503112 -70359515 + MIR3 SINE MIR 53 155 -53 334 292 108 0 chr9 47503864 47503994 -70358633 + MER5A DNA MER1_type 46 189 0 448 266 49 0 chr9 47504240 47504383 -70358244 + L1MC4a LINE L1 5758 5907 -1901 1990 101 22 7 chr9 47504390 47504666 -70357961 - AluSc SINE Alu -29 280 1 2320 115 3 0 chr9 47504791 47505096 -70357531 - AluSx SINE Alu -4 308 3 22 0 0 0 chr9 47505098 47505120 -70357507 + AT_rich Low_complexity Low_complexity 1 22 0 318 267 190 26 chr9 47506878 47507073 -70355554 + MIR SINE MIR 20 246 -16 761 289 17 34 chr9 47507587 47507826 -70354801 - MIR SINE MIR -4 258 24 1994 170 37 40 chr9 47507864 47508294 -70354333 + LTR3 LTR ERVK 1 429 0 447 95 0 0 chr9 47508294 47508357 -70354270 + LTR3b LTR ERVK 438 500 0 25 0 0 0 chr9 47508950 47508975 -70353652 + AT_rich Low_complexity Low_complexity 1 25 0 418 38 0 0 chr9 47509713 47509766 -70352861 + MADE1 DNA Mariner 1 53 -27 441 257 29 29 chr9 47509767 47509903 -70352724 + MIR SINE MIR 101 236 -26 574 260 43 39 chr9 47511315 47511523 -70351104 - MER63A DNA MER1_type -1 209 1 199 282 64 26 chr9 47511924 47512002 -70350625 + MER5B DNA MER1_type 42 122 -56 349 339 23 46 chr9 47512344 47512474 -70350153 + MER5A DNA MER1_type 63 189 0 333 285 25 97 chr9 47513192 47513553 -70349074 + L1MC4a LINE L1 5592 5926 -1882 273 212 141 12 chr9 47514117 47514202 -70348425 - MER117 DNA MER1_type -73 124 29 227 308 8 68 chr9 47514638 47514755 -70347872 + MIR3 SINE MIR 83 192 -16 2140 110 3 0 chr9 47515074 47515419 -70347208 + AluSp SINE Alu 1 313 0 673 301 41 16 chr9 47515590 47515836 -70346791 + MER45C DNA AcHobo 2 253 -700 517 190 11 28 chr9 47515885 47516076 -70346551 + MER45C DNA AcHobo 736 953 0 599 271 133 9 chr9 47516482 47516700 -70345927 + MIR SINE MIR 14 258 -4 228 86 0 0 chr9 47516873 47516908 -70345719 + (CA)n Simple_repeat Simple_repeat 2 36 0 567 283 143 14 chr9 47518420 47518653 -70343974 - MIR SINE MIR 0 262 3 342 0 0 0 chr9 47518911 47518949 -70343678 + (CA)n Simple_repeat Simple_repeat 2 39 0 272 140 0 18 chr9 47519035 47519092 -70343535 + (TA)n Simple_repeat Simple_repeat 1 56 0 4288 218 1 8 chr9 47519614 47520724 -70341903 + L1P LINE L1 4280 5380 -784 * 4864 131 23 13 chr9 47520720 47521560 -70341067 + L1PA16 LINE L1 5319 6166 0 331 187 80 0 chr9 47522068 47522143 -70340484 + MER96 DNA MER1_type? 95 175 0 22 0 0 0 chr9 47522666 47522688 -70339939 + AT_rich Low_complexity Low_complexity 1 22 0 351 115 39 31 chr9 47524295 47524425 -70338202 + (TA)n Simple_repeat Simple_repeat 1 131 0 319 323 75 25 chr9 47524815 47524976 -70337651 - L3 LINE CR1 0 1577 1409 1369 138 41 0 chr9 47525067 47525285 -70337342 + MER30 DNA MER1_type 4 230 0 242 352 56 0 chr9 47525403 47525528 -70337099 - L2 LINE L2 -225 3047 2916 181 239 194 0 chr9 47525510 47525577 -70337050 - L3 LINE CR1 -176 1401 1322 * 321 340 53 16 chr9 47525663 47525851 -70336776 - L3 LINE CR1 -394 1183 989 757 286 70 12 chr9 47525860 47526101 -70336526 + MIR SINE MIR 8 262 0 305 321 88 10 chr9 47526479 47526672 -70335955 + MLT1K LTR MaLR 2 209 -379 308 263 203 47 chr9 47526715 47526947 -70335680 + MLT1K LTR MaLR 321 588 0 254 243 40 54 chr9 47527456 47527530 -70335097 + MER91C DNA MER1_type 50 122 -18 6850 69 2 13 chr9 47528029 47529483 -70333144 + L1PA8 LINE L1 4716 6172 0 379 310 44 0 chr9 47529496 47529609 -70333018 - L2 LINE L2 -9 3304 3187 354 266 184 32 chr9 47529790 47529948 -70332679 + MIR SINE MIR 49 230 -32 2319 113 0 0 chr9 47530685 47530996 -70331631 + AluSx SINE Alu 1 311 -1 297 0 0 0 chr9 47531770 47531803 -70330824 + (CA)n Simple_repeat Simple_repeat 1 33 0 333 68 0 0 chr9 47531803 47531847 -70330780 + (TC)n Simple_repeat Simple_repeat 1 44 0 197 174 0 22 chr9 47532549 47532595 -70330032 + (TA)n Simple_repeat Simple_repeat 1 45 0 263 300 130 10 chr9 47533778 47533878 -70328749 + MIR3 SINE MIR 83 194 -14 2019 189 19 6 chr9 47534260 47534620 -70328007 - MLT1A1 LTR MaLR 0 365 1 535 260 124 6 chr9 47534965 47535134 -70327493 - MIR SINE MIR -49 213 25 24 0 0 0 chr9 47535395 47535419 -70327208 + AT_rich Low_complexity Low_complexity 1 24 0 329 316 115 28 chr9 47535615 47535833 -70326794 + MIR SINE MIR 26 262 0 204 256 0 0 chr9 47536015 47536058 -70326569 + MIR SINE MIR 220 262 0 221 356 96 14 chr9 47537431 47537577 -70325050 + L2 LINE L2 3106 3263 -9 430 366 49 46 chr9 47537614 47538122 -70324505 + L2 LINE L2 2769 3268 -4 196 362 14 0 chr9 47538947 47539016 -70323611 + L2 LINE L2 3203 3272 0 2062 134 0 3 chr9 47539128 47539420 -70323207 - AluSx SINE Alu -17 295 5 211 274 126 11 chr9 47539623 47539718 -70322909 - MIR SINE MIR -10 252 147 1702 239 103 15 chr9 47539943 47540469 -70322158 + L1ME3 LINE L1 5389 5960 -202 1741 211 55 25 chr9 47540523 47540998 -70321629 - MER74B LTR ERVL -56 566 78 452 258 53 53 chr9 47541028 47541237 -70321390 + L1ME3 LINE L1 5954 6162 0 2508 131 36 5 chr9 47541453 47541865 -70320762 + MSTB LTR MaLR 1 425 -1 437 364 77 34 chr9 47542489 47542816 -70319811 + L2 LINE L2 2932 3272 0 256 296 119 25 chr9 47543303 47543462 -70319165 - L3b LINE CR1 -128 1455 1282 1590 147 12 177 chr9 47544043 47544539 -70318088 + MLT2D LTR ERVL 1 414 0 186 297 97 65 chr9 47545009 47545164 -70317463 + MIR SINE MIR 103 262 0 226 200 22 0 chr9 47545410 47545455 -70317172 - MIR3 SINE MIR -6 202 157 979 263 36 11 chr9 47545459 47545737 -70316890 + MER58B DNA MER1_type 6 290 -51 349 232 24 0 chr9 47545755 47545837 -70316790 + MER58B DNA MER1_type 255 338 -3 340 325 0 0 chr9 47545839 47545922 -70316705 - MIR3 SINE MIR -48 160 78 808 197 13 96 chr9 47546588 47546827 -70315800 + MER20 DNA MER1_type 1 219 0 554 346 90 28 chr9 47548005 47548646 -70313981 - L2 LINE L2 -189 3083 2368 241 299 195 7 chr9 47549073 47549227 -70313400 - MER5A DNA MER1_type -6 183 1 243 88 0 0 chr9 47549328 47549362 -70313265 + (CCTA)n Simple_repeat Simple_repeat 1 34 0 24 32 0 0 chr9 47549654 47549685 -70312942 + AT_rich Low_complexity Low_complexity 1 31 0 396 293 30 42 chr9 47550427 47550594 -70312033 + MER5A DNA MER1_type 7 171 -18 186 345 225 29 chr9 47552257 47552564 -70310063 + L2 LINE L2 2440 2806 -508 292 83 333 0 chr9 47552567 47552627 -70310000 + MADE1 DNA Mariner 1 80 0 484 271 29 36 chr9 47552764 47552904 -70309723 - MIR3 SINE MIR -55 153 15 241 206 32 32 chr9 47553994 47554057 -70308570 + GA-rich Low_complexity Low_complexity 2 64 0 337 318 58 35 chr9 47558197 47558370 -70304257 - MIR SINE MIR -75 187 11 825 273 60 0 chr9 47558506 47558722 -70303905 + MIR SINE MIR 12 240 -22 3509 94 41 8 chr9 47560413 47560944 -70301683 - L1PA10 LINE L1 -4 6164 5616 2583 93 0 11 chr9 47560944 47561553 -70301074 + L1PA10 LINE L1 5006 5607 -561 571 289 80 0 chr9 47561949 47562136 -70300491 - L3 LINE CR1 -41 1536 1335 216 0 0 0 chr9 47562501 47562525 -70300102 + (CA)n Simple_repeat Simple_repeat 2 25 0 438 318 18 12 chr9 47562679 47562849 -70299778 + MIR SINE MIR 30 200 -62 728 303 35 20 chr9 47562945 47563199 -70299428 + MIR SINE MIR 5 262 0 206 219 0 0 chr9 47563798 47563839 -70298788 + (CA)n Simple_repeat Simple_repeat 2 42 0 717 283 101 4 chr9 47564641 47564878 -70297749 - MIR SINE MIR -1 261 2 23 0 0 0 chr9 47564883 47564906 -70297721 + AT_rich Low_complexity Low_complexity 1 23 0 193 349 133 12 chr9 47565122 47565205 -70297422 + L2 LINE L2 3162 3254 -18 375 303 92 0 chr9 47565266 47565408 -70297219 - MIR SINE MIR -59 203 49 617 297 165 27 chr9 47566212 47566749 -70295878 + L2 LINE L2 2708 3312 -1 285 250 0 0 chr9 47567390 47567458 -70295169 - MIR SINE MIR -108 154 87 754 277 45 1 chr9 47567612 47567823 -70294804 + L1ME1 LINE L1 5921 6145 -33 26 50 0 0 chr9 47567869 47567909 -70294718 + AT_rich Low_complexity Low_complexity 1 40 0 573 275 140 39 chr9 47567978 47568501 -70294126 - L1ME4a LINE L1 -204 5917 5317 2251 92 7 16 chr9 47568501 47568806 -70293821 - AluSp SINE Alu -11 302 1 573 275 140 39 chr9 47568806 47568876 -70293751 - L1ME4a LINE L1 -804 5317 5255 477 127 0 0 chr9 47569172 47569251 -70293376 + (TG)n Simple_repeat Simple_repeat 2 80 0 2105 112 37 0 chr9 47569491 47569785 -70292842 + AluSc SINE Alu 1 305 -4 234 387 61 0 chr9 47570552 47570733 -70291894 + MIR3 SINE MIR 16 207 -1 183 143 86 0 chr9 47571019 47571054 -70291573 - L2 LINE L2 -1896 1418 1381 233 333 15 0 chr9 47571237 47571303 -70291324 - L2 LINE L2 -5 3267 3201 258 272 88 24 chr9 47572145 47572270 -70290357 - L2 LINE L2 -549 2765 2633 2116 132 10 0 chr9 47573043 47573347 -70289280 + AluSx SINE Alu 1 307 -5 345 153 0 28 chr9 47573796 47573868 -70288759 + L1MB8 LINE L1 6109 6178 0 24 0 0 0 chr9 47574774 47574798 -70287829 + AT_rich Low_complexity Low_complexity 1 24 0 380 261 152 47 chr9 47575197 47575436 -70287191 + MLT1L LTR MaLR 263 492 -19 240 292 62 10 chr9 47575475 47575571 -70287056 - MIR SINE MIR -132 130 30 273 109 0 0 chr9 47575849 47575895 -70286732 + (TTCA)n Simple_repeat Simple_repeat 3 48 0 195 359 31 0 chr9 47575895 47575959 -70286668 - L2 LINE L2 -26 3246 3181 22 0 0 0 chr9 47576551 47576573 -70286054 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr9 47576924 47576953 -70285674 + AT_rich Low_complexity Low_complexity 1 29 0 529 283 14 0 chr9 47577512 47577650 -70284977 - LTR16C LTR ERVL 0 491 352 305 189 27 0 chr9 47577690 47577764 -70284863 + (CATA)n Simple_repeat Simple_repeat 1 76 0 1046 137 106 168 chr9 47578032 47578354 -70284273 + AluJb SINE Alu 1 302 0 5822 84 18 2 chr9 47578401 47579197 -70283430 - L1PA13 LINE L1 0 6163 5356 799 319 90 20 chr9 47582034 47582388 -70280239 + MLT1K LTR MaLR 189 567 -21 208 366 76 30 chr9 47582465 47582596 -70280031 - L2 LINE L2 0 3272 3136 336 24 0 0 chr9 47582626 47582667 -70279960 + (CA)n Simple_repeat Simple_repeat 2 42 0 450 241 162 58 chr9 47583810 47584175 -70278452 + HAL1b LINE L1 483 885 -463 1781 168 3 10 chr9 47584324 47584621 -70278006 + AluJo SINE Alu 1 295 -17 406 333 69 57 chr9 47584803 47584899 -70277728 + L1MC4a LINE L1 2942 3035 -3111 1495 170 39 39 chr9 47584899 47585182 -70277445 + AluJb SINE Alu 3 285 -27 406 333 69 57 chr9 47585182 47585577 -70277050 + L1MC4a LINE L1 3035 3439 -2707 344 361 112 0 chr9 47586045 47586250 -70276377 + L1MC4a LINE L1 4740 4967 -1179 1298 271 118 17 chr9 47586475 47587059 -70275568 + L1MC4a LINE L1 5263 5905 -1903 221 310 168 18 chr9 47588029 47588142 -70274485 - L2 LINE L2 -3 3269 3140 1993 130 31 3 chr9 47588497 47588789 -70273838 - AluSx SINE Alu -12 300 1 22 0 0 0 chr9 47589320 47589342 -70273285 + AT_rich Low_complexity Low_complexity 1 22 0 355 228 63 0 chr9 47589576 47589655 -70272972 + MIR3 SINE MIR 95 178 -30 391 324 129 54 chr9 47590472 47590525 -70272102 - L2 LINE L2 -3 3310 3262 1921 137 27 7 chr9 47590525 47590688 -70271939 - AluSq SINE Alu -14 299 126 396 0 0 0 chr9 47590688 47590732 -70271895 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 1921 137 27 7 chr9 47590732 47590860 -70271767 - AluSq SINE Alu -187 126 2 391 324 129 54 chr9 47590860 47591179 -70271448 - L2 LINE L2 -51 3262 2910 196 308 19 0 chr9 47591234 47591286 -70271341 + MER5B DNA MER1_type 123 175 -3 454 296 47 81 chr9 47591387 47591579 -70271048 + MIR SINE MIR 14 206 -56 408 20 0 0 chr9 47591579 47591628 -70270999 + (CA)n Simple_repeat Simple_repeat 2 50 0 454 296 47 81 chr9 47591628 47591680 -70270947 + MIR SINE MIR 206 258 -4 395 338 28 0 chr9 47593420 47593569 -70269058 - MIR SINE MIR -62 146 36 207 326 45 0 chr9 47593774 47593863 -70268764 + MIR SINE MIR 79 171 -91 1983 223 48 23 chr9 47593865 47594313 -70268314 + MLT2B1 LTR ERVL 1 463 -57 294 29 0 0 chr9 47594313 47594348 -70268279 + (GA)n Simple_repeat Simple_repeat 2 36 0 1983 223 48 23 chr9 47594348 47594379 -70268248 + MLT2B1 LTR ERVL 463 492 -28 491 291 132 47 chr9 47595225 47595611 -70267016 + L2 LINE L2 2794 3192 -121 188 211 0 0 chr9 47595609 47595647 -70266980 + MIR SINE MIR 223 260 -2 * 2013 139 10 3 chr9 47597127 47597437 -70265190 + AluSx SINE Alu 1 312 0 197 271 186 0 chr9 47597907 47597977 -70264650 - L2 LINE L2 -2 3311 3229 627 375 90 34 chr9 47598199 47598538 -70264089 - L2 LINE L2 -429 2885 2566 243 0 0 0 chr9 47598538 47598565 -70264062 + (TAGG)n Simple_repeat Simple_repeat 1 27 0 627 375 90 34 chr9 47598565 47599188 -70263439 - L2 LINE L2 -748 2566 1869 899 204 43 35 chr9 47600312 47600542 -70262085 + MIR SINE MIR 31 262 0 548 83 17 25 chr9 47603746 47603866 -70258761 + (TTTA)n Simple_repeat Simple_repeat 3 121 0 28 29 0 0 chr9 47603940 47603975 -70258652 + AT_rich Low_complexity Low_complexity 1 35 0 453 276 148 84 chr9 47604060 47604513 -70258114 - Charlie8 DNA MER1_type -1929 488 7 1365 133 26 142 chr9 47604885 47605231 -70257396 + AluYb8 SINE Alu 3 308 0 8672 52 8 2 chr9 47605698 47606762 -70255865 + MER11C LTR ERVK 1 1071 0 270 318 59 0 chr9 47606922 47607007 -70255620 - MER91C DNA MER1_type 0 140 51 1752 151 10 20 chr9 47607106 47607410 -70255217 - AluJo SINE Alu -10 302 2 214 273 36 82 chr9 47607416 47607526 -70255101 - L2 LINE L2 -221 3051 2947 1475 182 4 4 chr9 47607620 47607873 -70254754 - AluJb SINE Alu -17 295 43 23 33 0 0 chr9 47608466 47608496 -70254131 + AT_rich Low_complexity Low_complexity 1 30 0 186 256 17 86 chr9 47609430 47609469 -70253158 - L2 LINE L2 -1001 2313 2273 1974 148 3 3 chr9 47609469 47609767 -70252860 + AluSx SINE Alu 1 298 -14 186 256 17 86 chr9 47609767 47609844 -70252783 - L2 LINE L2 -1041 2273 2205 7002 143 33 8 chr9 47611051 47612113 -70250514 + Tigger3b DNA MER2_type 2 1100 -1928 3488 129 9 11 chr9 47612113 47612641 -70249986 + MER1A DNA MER1_type 1 527 0 7002 143 33 8 chr9 47612641 47612777 -70249850 + Tigger3b DNA MER2_type 1100 1231 0 2186 140 0 0 chr9 47615257 47615564 -70247063 - AluSq SINE Alu -6 307 1 257 234 117 0 chr9 47616785 47616862 -70245765 - MIR SINE MIR -50 212 127 342 348 45 11 chr9 47617055 47617233 -70245394 + MER5A DNA MER1_type 2 185 -4 2003 139 3 0 chr9 47617877 47618171 -70244456 - AluSx SINE Alu -16 296 2 202 189 0 0 chr9 47620143 47620180 -70242447 + (CA)n Simple_repeat Simple_repeat 2 38 0 367 238 95 10 chr9 47620838 47620980 -70241647 - MIR SINE MIR -13 249 94 1640 223 50 26 chr9 47621070 47621488 -70241139 - MLT1C LTR MaLR -1 466 39 602 60 12 0 chr9 47623080 47623163 -70239464 + (TAGA)n Simple_repeat Simple_repeat 2 85 0 676 329 39 0 chr9 47623189 47623499 -70239128 - L1ME LINE L1 -318 5803 5482 22 0 0 0 chr9 47623536 47623558 -70239069 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr9 47623716 47623753 -70238874 + AT_rich Low_complexity Low_complexity 1 37 0 453 313 69 0 chr9 47623959 47624119 -70238508 + MIR SINE MIR 69 239 -23 435 293 133 27 chr9 47626182 47626407 -70236220 - MIR SINE MIR -12 250 2 297 277 21 32 chr9 47626410 47626504 -70236123 + L2 LINE L2 3175 3267 -5 1890 151 19 1 chr9 47627630 47628090 -70234537 - L1M2 LINE L1 -743 5403 5030 461 167 148 0 chr9 47628090 47628198 -70234429 + L1MA9 LINE L1 6183 6306 -6 752 272 154 45 chr9 47629534 47629916 -70232711 + MLT1J1 LTR MaLR 23 446 0 5092 145 59 9 chr9 47630261 47631330 -70231297 + L1PA13 LINE L1 5034 6144 -19 246 62 0 0 chr9 47631373 47631405 -70231222 + (TG)n Simple_repeat Simple_repeat 2 33 0 39268 34 8 2 chr9 47632082 47637629 -70224998 - L1PA3 LINE L1 -3 6152 569 572 262 152 11 chr9 47637906 47638097 -70224530 + MIR SINE MIR 8 225 -37 341 267 69 10 chr9 47638397 47638498 -70224129 + MIR SINE MIR 31 137 -125 1043 225 38 13 chr9 47638755 47638991 -70223636 + MIR SINE MIR 20 261 -1 230 161 0 36 chr9 47638994 47639050 -70223577 + CT-rich Low_complexity Low_complexity 1 54 0 7248 42 10 0 chr9 47639126 47640426 -70222201 + L1PA4 LINE L1 4845 6153 -2 21 0 0 0 chr9 47640452 47640473 -70222154 + AT_rich Low_complexity Low_complexity 1 21 0 3518 80 24 2 chr9 47641259 47642076 -70220551 - L1P3 LINE L1 -454 5700 4874 21 36 0 0 chr9 47642503 47642531 -70220096 + AT_rich Low_complexity Low_complexity 1 28 0 224 230 0 14 chr9 47644555 47644629 -70217998 + GA-rich Low_complexity Low_complexity 1 73 0 1805 177 21 15 chr9 47644848 47645187 -70217440 + MER58B DNA MER1_type 1 341 0 3352 123 6 8 chr9 47645224 47645718 -70216909 + MER1A DNA MER1_type 37 529 0 1447 219 3 67 chr9 47645910 47646298 -70216329 - MLT1A2 LTR MaLR 0 374 12 2458 163 41 28 chr9 47646662 47647123 -70215504 - MLT1C LTR MaLR 0 467 1 1145 190 36 0 chr9 47647315 47647536 -70215091 - AluJb SINE Alu 0 312 84 368 234 121 35 chr9 47647666 47647807 -70214820 + MER103 DNA DNA 13 165 -1 207 0 0 0 chr9 47648062 47648085 -70214542 + (TATG)n Simple_repeat Simple_repeat 2 24 0 1486 221 21 6 chr9 47648271 47648601 -70214026 - MER58B DNA MER1_type 0 341 7 189 0 0 0 chr9 47648719 47648740 -70213887 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 921 233 0 0 chr9 47649534 47649723 -70212904 + L1M4 LINE L1 5570 5758 -426 252 378 78 16 chr9 47649755 47650119 -70212508 + L2 LINE L2 2662 3060 -212 258 56 0 0 chr9 47650238 47650274 -70212353 + (A)n Simple_repeat Simple_repeat 1 36 0 194 284 245 0 chr9 47650280 47650382 -70212245 + L2 LINE L2 3146 3272 0 237 263 97 61 chr9 47651898 47652012 -70210615 + L2 LINE L2 3155 3272 0 2865 6 0 0 chr9 47652151 47652462 -70210165 - AluY SINE Alu 0 311 1 648 233 32 69 chr9 47653525 47653714 -70208913 - MIR SINE MIR -51 211 30 306 0 0 0 chr9 47655569 47655603 -70207024 + (TTA)n Simple_repeat Simple_repeat 3 36 0 270 296 169 7 chr9 47655822 47655964 -70206663 + MIR SINE MIR 40 204 -58 278 174 0 87 chr9 47656446 47656515 -70206112 + MER58B DNA MER1_type 276 338 -3 30 27 0 0 chr9 47656623 47656660 -70205967 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr9 47656688 47656716 -70205911 + AT_rich Low_complexity Low_complexity 1 28 0 289 278 60 15 chr9 47656723 47656856 -70205771 - MER33 DNA MER1_type -183 141 3 21574 151 37 49 chr9 47657707 47659967 -70202660 + L1MA3 LINE L1 16 2301 -5423 239 114 0 0 chr9 47659967 47660011 -70202616 + Alu SINE Alu 259 302 0 21574 151 37 49 chr9 47660011 47660879 -70201748 + L1MA3 LINE L1 2301 3178 -4546 1971 132 14 0 chr9 47660879 47661168 -70201459 - AluSx SINE Alu -19 293 1 21574 151 37 49 chr9 47661168 47662210 -70200417 + L1MA3 LINE L1 3178 4231 -3493 901 156 0 0 chr9 47662210 47662351 -70200276 + AluSg/x SINE Alu 170 310 0 21574 151 37 49 chr9 47662351 47665829 -70196798 + L1MA3 LINE L1 4231 7724 0 1480 205 93 87 chr9 47666311 47666803 -70195824 + MLT1D LTR MaLR 5 499 -6 1660 154 66 0 chr9 47666835 47667140 -70195487 + L1PA16 LINE L1 5834 6158 -8 189 333 21 54 chr9 47667498 47667591 -70195036 - MIR SINE MIR -155 107 18 2323 105 3 0 chr9 47667705 47668011 -70194616 - AluSg SINE Alu -3 307 1 1767 225 180 7 chr9 47669149 47669611 -70193016 - MLT1F LTR MaLR 0 542 1 2094 150 48 0 chr9 47669635 47669988 -70192639 - MLT1B LTR MaLR 0 390 21 991 242 123 53 chr9 47670242 47670713 -70191914 + L2 LINE L2 2809 3312 -1 331 358 12 35 chr9 47671402 47671575 -70191052 + MIR3 SINE MIR 31 199 -9 2234 105 7 0 chr9 47671978 47672274 -70190353 + AluSx SINE Alu 1 298 -14 281 276 53 0 chr9 47672274 47672350 -70190277 + polypurine Low_complexity Low_complexity 1 80 0 1096 201 123 47 chr9 47672899 47673235 -70189392 - MLT1A1 LTR MaLR 0 365 1 22 70 0 0 chr9 47675436 47675479 -70187148 + AT_rich Low_complexity Low_complexity 1 43 0 225 345 118 9 chr9 47675543 47675653 -70186974 + L2 LINE L2 3150 3271 -1 2423 34 3 0 chr9 47676579 47676871 -70185756 + L1PA4 LINE L1 5862 6154 -1 423 298 54 118 chr9 47677819 47678098 -70184529 + L2 LINE L2 2514 2774 -540 1875 133 70 0 chr9 47678251 47678537 -70184090 - AluSx SINE Alu -6 306 1 343 304 215 25 chr9 47678537 47678853 -70183774 + L2 LINE L2 2938 3313 0 739 333 87 23 chr9 47678979 47679532 -70183095 - MER115 DNA AcHobo -12 681 12 234 324 14 0 chr9 47679582 47679653 -70182974 - MIR SINE MIR -184 78 7 200 276 66 40 chr9 47679913 47679989 -70182638 - L2 LINE L2 -9 3263 3186 2115 109 24 7 chr9 47680380 47680673 -70181954 + AluSx SINE Alu 1 298 -14 188 230 68 54 chr9 47681178 47681252 -70181375 - L2 LINE L2 -1899 1415 1341 522 132 0 0 chr9 47682290 47682366 -70180261 - AluS SINE Alu -227 86 11 1648 122 0 0 chr9 47682367 47682589 -70180038 + AluSg/x SINE Alu 83 304 -8 522 268 96 26 chr9 47683435 47683833 -70178794 + MLT1L LTR MaLR 142 611 -4 405 347 51 46 chr9 47685589 47686274 -70176353 - L2 LINE L2 0 3313 2638 27 49 0 0 chr9 47686679 47686720 -70175907 + AT_rich Low_complexity Low_complexity 1 41 0 3738 99 73 7 chr9 47686786 47687391 -70175236 - L1MA2 LINE L1 0 6304 5660 1457 182 6 54 chr9 47687887 47688200 -70174427 - AluJo SINE Alu -14 298 1 904 219 31 10 chr9 47688541 47688737 -70173890 + MER20 DNA MER1_type 13 212 -7 3960 137 36 29 chr9 47688825 47689150 -70173477 + L1MA8 LINE L1 5554 5875 -416 2196 100 0 0 chr9 47689150 47689431 -70173196 - AluSc SINE Alu -28 281 1 3960 137 36 29 chr9 47689431 47689833 -70172794 + L1MA8 LINE L1 5875 6286 -5 215 302 0 0 chr9 47690034 47690097 -70172530 + A-rich Low_complexity Low_complexity 4 66 0 206 260 65 26 chr9 47690933 47691010 -70171617 + MIR3 SINE MIR 85 164 -44 329 254 110 0 chr9 47692133 47692251 -70170376 - MER103 DNA DNA -16 150 20 591 260 144 11 chr9 47693382 47693563 -70169064 - MIR SINE MIR -44 218 14 278 286 162 26 chr9 47693874 47694028 -70168599 - MIR SINE MIR -19 243 69 23 0 0 0 chr9 47694084 47694107 -70168520 + AT_rich Low_complexity Low_complexity 1 23 0 8194 104 14 3 chr9 47694113 47696112 -70166515 - L1PA7 LINE L1 0 6469 4453 12227 108 16 44 chr9 47696112 47698183 -70164444 - L1PA7 LINE L1 -4389 2072 12 1860 151 0 45 chr9 47698989 47699301 -70163326 - AluJo SINE Alu -4 308 11 246 163 0 0 chr9 47699602 47699651 -70162976 + L1MA9 LINE L1 6259 6307 -5 279 366 15 30 chr9 47699795 47699926 -70162701 - MIR SINE MIR -46 216 88 1493 179 21 0 chr9 47701825 47702115 -70160512 - L1MB1 LINE L1 -1 6167 5872 550 272 159 35 chr9 47702384 47702674 -70159953 + L2 LINE L2 2988 3313 0 22 35 0 0 chr9 47702902 47702931 -70159696 + AT_rich Low_complexity Low_complexity 1 29 0 2038 134 7 0 chr9 47703316 47703621 -70159006 + AluSx SINE Alu 1 307 -5 2042 114 9 25 chr9 47703759 47704074 -70158553 + AluSx SINE Alu 1 310 -2 291 346 40 59 chr9 47704079 47704281 -70158346 - L2 LINE L2 -217 3055 2858 384 293 146 20 chr9 47705292 47705318 -70157309 + L2 LINE L2 2713 2734 -579 1864 121 0 4 chr9 47705318 47705590 -70157037 + AluSq SINE Alu 36 306 -7 384 293 146 20 chr9 47705590 47705856 -70156771 + L2 LINE L2 2734 3035 -278 1628 233 91 32 chr9 47705856 47706366 -70156261 + MLT1F LTR MaLR 1 542 0 279 288 106 8 chr9 47706538 47706670 -70155957 + L2 LINE L2 3166 3310 -3 25 83 0 0 chr9 47707553 47707613 -70155014 + AT_rich Low_complexity Low_complexity 1 60 0 21 0 0 0 chr9 47707921 47707942 -70154685 + AT_rich Low_complexity Low_complexity 1 21 0 1876 128 0 7 chr9 47708116 47708390 -70154237 - AluSx SINE Alu -14 298 27 846 291 104 75 chr9 47710232 47711086 -70151541 + L1ME3A LINE L1 4080 4907 -1263 2365 85 0 0 chr9 47711086 47711381 -70151246 - AluY SINE Alu -16 295 1 846 291 104 75 chr9 47711381 47712342 -70150285 + L1ME3A LINE L1 4907 5951 -219 261 0 0 0 chr9 47714278 47714307 -70148320 + (TAAAAA)n Simple_repeat Simple_repeat 2 30 0 2081 117 3 7 chr9 47715035 47715335 -70147292 + AluSx SINE Alu 1 299 -13 267 31 0 0 chr9 47715751 47715783 -70146844 + (GAAAA)n Simple_repeat Simple_repeat 5 36 0 761 318 65 65 chr9 47715879 47716342 -70146285 + L2 LINE L2 2847 3309 -4 304 257 196 0 chr9 47716621 47716769 -70145858 + L2 LINE L2 3123 3299 -14 2045 113 4 0 chr9 47717019 47717293 -70145334 + AluSp SINE Alu 1 275 -38 1129 34 0 62 chr9 47717294 47717677 -70144950 + (GAAA)n Simple_repeat Simple_repeat 1 360 0 442 91 0 0 chr9 47718270 47718336 -70144291 - L1MB2 LINE L1 -7 6164 6099 1847 176 66 8 chr9 47718340 47718532 -70144095 - L1MB2 LINE L1 -150 6021 5842 2190 87 19 26 chr9 47718532 47718843 -70143784 - AluY SINE Alu -2 309 1 1847 176 66 8 chr9 47718843 47719013 -70143614 - L1MB2 LINE L1 -329 5842 5638 551 274 117 6 chr9 47719238 47719417 -70143210 + MIR SINE MIR 35 233 -29 327 243 0 0 chr9 47720328 47720398 -70142229 + MER69 DNA AcHobo 79 148 -1078 395 318 209 5 chr9 47721950 47722161 -70140466 + L2 LINE L2 2805 3058 -255 389 103 35 52 chr9 47722170 47722344 -70140283 + (TTATA)n Simple_repeat Simple_repeat 5 175 0 216 176 27 40 chr9 47722352 47722426 -70140201 + (TATAA)n Simple_repeat Simple_repeat 5 77 0 315 294 62 68 chr9 47722962 47723108 -70139519 - MIR SINE MIR -74 188 44 27 29 0 0 chr9 47723289 47723323 -70139304 + AT_rich Low_complexity Low_complexity 1 34 0 45 45 0 0 chr9 47723401 47723467 -70139160 + AT_rich Low_complexity Low_complexity 1 66 0 223 277 0 0 chr9 47723615 47723662 -70138965 + (CATATA)n Simple_repeat Simple_repeat 4 50 0 549 349 92 48 chr9 47723805 47724384 -70138243 + L1ME3 LINE L1 142 745 -5460 216 0 0 0 chr9 47724399 47724423 -70138204 + (GA)n Simple_repeat Simple_repeat 1 24 0 431 273 43 95 chr9 47724577 47724748 -70137879 + L1ME3 LINE L1 991 1139 -5066 1310 111 0 79 chr9 47724748 47724826 -70137801 + L1MA4 LINE L1 6063 6146 -154 2198 117 0 25 chr9 47724826 47725142 -70137485 + AluSx SINE Alu 1 308 -4 1310 111 0 79 chr9 47725142 47725315 -70137312 + L1MA4 LINE L1 6146 6294 -6 431 273 43 95 chr9 47725315 47725469 -70137158 + L1ME3 LINE L1 1139 1299 -4906 341 297 62 48 chr9 47726099 47726308 -70136319 + L1ME3 LINE L1 2148 2359 -4037 1495 198 163 9 chr9 47726319 47726749 -70135878 + LTR54B LTR ERV1 1 496 -2 1469 291 116 44 chr9 47726803 47730167 -70132460 + L1ME3 LINE L1 2418 6023 -208 1613 193 0 29 chr9 47730789 47731100 -70131527 + AluJo SINE Alu 2 303 -9 280 272 0 12 chr9 47731346 47731427 -70131200 - MIR SINE MIR -32 230 151 268 306 17 55 chr9 47731502 47731747 -70130880 - L2 LINE L2 -75 3238 2936 343 326 110 25 chr9 47731898 47732190 -70130437 - L2 LINE L2 -594 2720 2364 1553 92 0 10 chr9 47732224 47732430 -70130197 - AluSg/x SINE Alu -4 308 105 557 242 24 48 chr9 47732555 47732604 -70130023 - MIR SINE MIR -89 173 124 2378 116 22 11 chr9 47732604 47732975 -70129652 - THE1C LTR MaLR 0 375 1 557 242 24 48 chr9 47732975 47733090 -70129537 - MIR SINE MIR -138 124 13 373 336 14 7 chr9 47734544 47734690 -70127937 - MIR SINE MIR -8 254 108 341 187 13 0 chr9 47734744 47734819 -70127808 + GA-rich Low_complexity Low_complexity 2 77 0 23 0 0 0 chr9 47736773 47736796 -70125831 + AT_rich Low_complexity Low_complexity 1 23 0 215 200 0 0 chr9 47737086 47737121 -70125506 + L2 LINE L2 3263 3297 -16 263 93 23 0 chr9 47738031 47738074 -70124553 + (GGAA)n Simple_repeat Simple_repeat 3 46 0 289 191 29 0 chr9 47739196 47739264 -70123363 + L1MA8 LINE L1 6204 6273 -18 358 291 49 3 chr9 47740241 47740372 -70122255 - MIR SINE MIR -58 150 57 2287 91 3 0 chr9 47741836 47742132 -70120495 + AluSc SINE Alu 3 299 -10 1294 142 5 0 chr9 47743198 47743395 -70119232 - AluSq SINE Alu 0 313 116 1081 232 13 17 chr9 47746623 47746925 -70115702 + L1MC1 LINE L1 4760 5060 -1086 879 87 43 164 chr9 47746934 47747141 -70115486 + MER30 DNA MER1_type 1 182 -48 375 158 281 0 chr9 47747145 47747227 -70115400 + MER30 DNA MER1_type 125 229 -1 5552 160 45 23 chr9 47747238 47748478 -70114149 + L1MC1 LINE L1 5071 6327 -6 258 221 74 11 chr9 47749495 47749590 -70113037 - L1ME LINE L1 -267 5854 5754 21 0 0 0 chr9 47750349 47750370 -70112257 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr9 47751016 47751052 -70111575 + AT_rich Low_complexity Low_complexity 1 36 0 2180 190 52 14 chr9 47751843 47752328 -70110299 + MLT1D LTR MaLR 1 503 -2 1824 168 0 22 chr9 47752842 47753158 -70109469 + AluJb SINE Alu 1 309 -3 208 237 0 0 chr9 47753159 47753197 -70109430 + (CA)n Simple_repeat Simple_repeat 2 39 0 733 181 0 0 chr9 47753468 47753595 -70109032 + FLAM_C SINE Alu 11 137 -6 738 219 164 59 chr9 47754254 47754578 -70108049 - L1ME1 LINE L1 -6 6160 5803 2441 215 24 6 chr9 47754668 47755174 -70107453 - MLT2B1 LTR ERVL 0 520 6 25 0 0 0 chr9 47755196 47755221 -70107406 + AT_rich Low_complexity Low_complexity 1 25 0 940 306 105 35 chr9 47756040 47756677 -70105950 + L2 LINE L2 2049 2730 -584 271 386 36 23 chr9 47756708 47756928 -70105699 + L2 LINE L2 2521 2743 -571 248 246 101 87 chr9 47757256 47757394 -70105233 - L2 LINE L2 -2 3311 3172 200 293 61 12 chr9 47758869 47758951 -70103676 - MIR SINE MIR -57 205 120 3757 165 43 10 chr9 47759830 47760657 -70101970 + L1MA4A LINE L1 5365 6280 -23 258 314 97 48 chr9 47760899 47761023 -70101604 - MIR SINE MIR -70 192 63 189 94 0 0 chr9 47761233 47761265 -70101362 + (CA)n Simple_repeat Simple_repeat 1 32 0 217 300 50 12 chr9 47761751 47761831 -70100796 - MIR3 SINE MIR -9 199 117 315 104 0 0 chr9 47761884 47761932 -70100695 + (TATG)n Simple_repeat Simple_repeat 2 49 0 2447 46 3 10 chr9 47763650 47763956 -70098671 - AluY SINE Alu -7 304 1 262 312 72 2 chr9 47764073 47764188 -70098439 + MIR SINE MIR 35 154 -74 268 269 0 0 chr9 47764495 47764562 -70098065 + MIR SINE MIR 92 158 -104 210 393 12 0 chr9 47766471 47766555 -70096072 + MIR3 SINE MIR 75 159 -49 890 182 0 3 chr9 47767104 47767444 -70095183 + GA-rich Low_complexity Low_complexity 1 339 0 700 169 6 27 chr9 47768050 47768233 -70094394 + GA-rich Low_complexity Low_complexity 1 179 0 324 0 0 0 chr9 47768624 47768660 -70093967 + (TG)n Simple_repeat Simple_repeat 2 37 0 244 303 45 52 chr9 47769381 47769536 -70093091 - MER102b DNA MER1_type 0 341 188 840 298 86 37 chr9 47769553 47770036 -70092591 + MLT1F1 LTR MaLR 12 519 -48 308 200 24 59 chr9 47770064 47770149 -70092478 - MER102b DNA MER1_type -184 157 76 7504 83 11 13 chr9 47772465 47774347 -70088280 + L1PA7 LINE L1 4250 6154 0 333 298 95 30 chr9 47774496 47774911 -70087716 + L1MC4 LINE L1 646 1031 -5174 * 583 296 113 21 chr9 47774908 47775296 -70087331 + L1MC4 LINE L1 3966 4389 -1826 387 319 78 34 chr9 47775403 47775905 -70086722 + L1MC4 LINE L1 4526 5049 -1166 * 1763 253 133 27 chr9 47775899 47776602 -70086025 + L1MC4 LINE L1 5970 6758 -1353 2149 125 76 15 chr9 47776602 47776945 -70085682 + THE1B LTR MaLR 1 364 0 1763 253 133 27 chr9 47776945 47776985 -70085642 + L1MC4 LINE L1 6758 6792 -1319 1906 114 0 18 chr9 47777087 47777367 -70085260 - AluSq SINE Alu -33 280 6 235 180 20 20 chr9 47777380 47777430 -70085197 - MER5B DNA MER1_type -124 54 5 414 156 39 0 chr9 47777872 47777949 -70084678 + AluJ/FRAM SINE Alu 232 311 -1 297 340 160 19 chr9 47778907 47779063 -70083564 + MER5B DNA MER1_type 1 178 0 15015 56 7 2 chr9 47779770 47781832 -70080795 + L1P2 LINE L1 3431 5505 -649 21 0 0 0 chr9 47782086 47782107 -70080520 + AT_rich Low_complexity Low_complexity 1 21 0 222 244 22 33 chr9 47782169 47782259 -70080368 + (TCTA)n Simple_repeat Simple_repeat 2 90 0 5338 124 36 5 chr9 47782373 47783283 -70079344 - L1PB1 LINE L1 -1 6150 5215 23532 108 7 12 chr9 47784780 47788278 -70074349 + L1P LINE L1 11 3489 -2657 2975 232 69 49 chr9 47788432 47789538 -70073089 + L1MC4a LINE L1 6198 6280 -79 247 185 98 11 chr9 47789564 47789656 -70072971 + L1P LINE L1 5163 5262 -884 * 806 256 125 103 chr9 47789647 47790285 -70072342 + L1MC4a LINE L1 5254 5905 -1903 3157 256 89 53 chr9 47790290 47791731 -70070896 + L1MC4a LINE L1 5494 6882 -926 333 0 0 0 chr9 47791731 47791768 -70070859 + (ATTAG)n Simple_repeat Simple_repeat 3 39 0 3157 256 89 53 chr9 47791768 47791885 -70070742 + L1MC4a LINE L1 6882 6993 -815 2185 119 0 3 chr9 47791885 47792180 -70070447 + AluSx SINE Alu 1 294 -18 3157 256 89 53 chr9 47792180 47792328 -70070299 + L1MC4a LINE L1 6993 7262 -546 1696 220 65 34 chr9 47792325 47792635 -70069992 + L1ME2 LINE L1 5011 5310 -854 * 6480 62 5 0 chr9 47792635 47793462 -70069165 + L1PA7 LINE L1 5317 6147 -7 1696 220 65 34 chr9 47793462 47793953 -70068674 + L1ME2 LINE L1 5310 5857 -307 263 279 70 0 chr9 47794095 47794181 -70068446 - MER69 DNA AcHobo -14 2512 2421 646 151 50 17 chr9 47795351 47795470 -70067157 + FLAM_C SINE Alu 1 123 -10 219 111 42 97 chr9 47795481 47795553 -70067074 + (TTAAA)n Simple_repeat Simple_repeat 3 70 0 22 35 0 0 chr9 47795912 47795941 -70066686 + AT_rich Low_complexity Low_complexity 1 29 0 199 250 19 102 chr9 47796096 47796204 -70066423 - MIR SINE MIR -43 219 121 1811 133 18 21 chr9 47796257 47796589 -70066038 - AluSx SINE Alu 0 331 1 306 0 0 0 chr9 47797835 47797869 -70064758 + (TA)n Simple_repeat Simple_repeat 2 35 0 646 333 91 35 chr9 47798194 47798678 -70063949 - L3 LINE CR1 -393 1184 674 1225 80 0 0 chr9 47798936 47799086 -70063541 - AluY SINE Alu -161 150 1 376 351 134 22 chr9 47799987 47800300 -70062327 + L2 LINE L2 2922 3269 -3 181 226 38 19 chr9 47800439 47800492 -70062135 + MIR SINE MIR 77 130 -78 333 236 47 28 chr9 47800813 47800919 -70061708 - MIR3 SINE MIR -94 114 7 259 333 18 54 chr9 47801996 47802075 -70060552 + MLT1I LTR MaLR 6 86 -323 1745 233 38 4 chr9 47802075 47802525 -70060102 + MLT1C LTR MaLR 1 465 -2 259 333 18 54 chr9 47802525 47802613 -70060014 + MLT1I LTR MaLR 86 167 -242 23 54 0 0 chr9 47802790 47802827 -70059800 + AT_rich Low_complexity Low_complexity 1 37 0 1220 89 132 0 chr9 47803103 47803293 -70059334 - L1PA13 LINE L1 -3 6160 5946 519 296 95 31 chr9 47803393 47803606 -70059021 + MIR SINE MIR 38 262 0 254 141 47 62 chr9 47803728 47803792 -70058835 - HERVH48 LTR ERV1 -5298 1356 1294 485 298 45 34 chr9 47806477 47806655 -70055972 + MIR SINE MIR 32 211 -51 349 348 26 0 chr9 47806653 47806768 -70055859 + L2 LINE L2 3188 3305 -8 * 219 196 0 20 chr9 47806821 47806872 -70055755 + (TTA)n Simple_repeat Simple_repeat 3 52 0 217 260 156 26 chr9 47806981 47807058 -70055569 + MIR SINE MIR 31 117 -91 302 227 0 34 chr9 47807650 47807738 -70054889 + L1MC5 LINE L1 7839 7923 -38 1943 113 0 0 chr9 47807738 47807995 -70054632 - AluSx SINE Alu -16 296 40 326 299 72 60 chr9 47808683 47808850 -70053777 - MIR3 SINE MIR -23 185 17 184 240 20 40 chr9 47810097 47810147 -70052480 - L2 LINE L2 -863 2451 2403 503 324 85 52 chr9 47810403 47810675 -70051952 + L2 LINE L2 2989 3269 -3 307 289 134 21 chr9 47812406 47812548 -70050079 + MIR SINE MIR 4 161 -101 * 536 252 162 40 chr9 47812518 47812796 -70049831 - L2 LINE L2 -5 3308 2997 26 30 0 0 chr9 47813504 47813537 -70049090 + AT_rich Low_complexity Low_complexity 1 33 0 332 339 9 0 chr9 47814751 47814860 -70047767 + (TATATG)n Simple_repeat Simple_repeat 3 112 0 574 319 119 19 chr9 47815859 47816269 -70046358 + L1M4 LINE L1 3022 3472 -2674 979 114 0 78 chr9 47816328 47816494 -70046133 - AluSc SINE Alu -22 287 135 12288 128 30 21 chr9 47816590 47818643 -70043984 + Tigger1 DNA MER2_type 1 2072 -346 5355 98 36 34 chr9 47818653 47819512 -70043115 - L1PA11 LINE L1 -4 6170 5310 751 183 19 1 chr9 47819494 47819650 -70042977 + L1PA15-16 LINE L1 2098 2255 -3891 * 13527 152 38 7 chr9 47819684 47820907 -70041720 + L1PA15-16 LINE L1 2733 3917 -2229 1973 111 21 0 chr9 47820907 47821225 -70041402 + AluSx SINE Alu 1 324 0 13527 152 38 7 chr9 47821225 47822493 -70040134 + L1PA15-16 LINE L1 3917 5302 -844 2165 116 88 0 chr9 47822494 47822823 -70039804 + Tigger1 DNA MER2_type 2061 2418 0 243 294 95 16 chr9 47823318 47823444 -70039183 + MIR SINE MIR 124 259 -3 201 343 57 36 chr9 47824996 47825136 -70037491 - L2 LINE L2 -215 3057 2915 209 203 145 0 chr9 47825427 47825496 -70037131 - MIR SINE MIR -82 180 102 397 336 72 1 chr9 47825870 47826041 -70036586 + MIR SINE MIR 12 197 -11 234 280 0 0 chr9 47826974 47827024 -70035603 + (TATATG)n Simple_repeat Simple_repeat 2 51 0 1173 288 51 3 chr9 47827077 47827449 -70035178 + LTR33 LTR ERVL 2 391 -130 318 284 17 17 chr9 47829219 47829335 -70033292 + Charlie8 DNA MER1_type 73 188 -2229 23 54 0 0 chr9 47830557 47830594 -70032033 + AT_rich Low_complexity Low_complexity 1 37 0 38 75 0 0 chr9 47831015 47831095 -70031532 + AT_rich Low_complexity Low_complexity 1 80 0 2174 136 0 0 chr9 47831365 47831667 -70030960 + AluSx SINE Alu 3 304 -8 243 369 99 31 chr9 47833351 47833573 -70029054 - L2 LINE L2 0 3272 3036 1098 222 9 0 chr9 47833576 47833797 -70028830 + MER58A DNA MER1_type 2 224 0 310 362 22 45 chr9 47834331 47834555 -70028072 - L2 LINE L2 -2 3311 3093 530 286 25 31 chr9 47834819 47834980 -70027647 - MIR SINE MIR -17 245 86 325 161 16 0 chr9 47835363 47835425 -70027202 + MER116 DNA Mariner 18 80 0 419 294 73 19 chr9 47838586 47838783 -70023844 + MER20B DNA MER1_type 4 210 -9 2183 96 0 17 chr9 47840342 47840644 -70021983 + AluY SINE Alu 2 298 -13 264 283 108 33 chr9 47841903 47842023 -70020604 + MIR SINE MIR 64 192 -70 2115 130 138 5 chr9 47842054 47842432 -70020195 + MSTA LTR MaLR 1 428 0 4053 53 2 0 chr9 47842666 47843174 -70019453 + L1PA6 LINE L1 5645 6153 -1 471 311 80 52 chr9 47843185 47843436 -70019191 - MIR SINE MIR -4 258 1 964 184 164 82 chr9 47843475 47843840 -70018787 + MSTD LTR MaLR 1 395 -1 21 0 0 0 chr9 47844718 47844739 -70017888 + AT_rich Low_complexity Low_complexity 1 21 0 1446 225 119 30 chr9 47844821 47845284 -70017343 + MLT1D LTR MaLR 1 504 -1 24 53 0 0 chr9 47846218 47846256 -70016371 + AT_rich Low_complexity Low_complexity 1 38 0 2716 225 103 16 chr9 47846612 47847379 -70015248 - L1MB7 LINE L1 -11 6153 5329 21 0 0 0 chr9 47848011 47848032 -70014595 + AT_rich Low_complexity Low_complexity 1 21 0 374 206 29 10 chr9 47848133 47848235 -70014392 - LTR67 LTR ERVL -20 537 434 193 146 0 52 chr9 47848647 47848743 -70013884 + (TA)n Simple_repeat Simple_repeat 1 91 0 242 253 23 0 chr9 47848771 47848858 -70013769 - L1MC4 LINE L1 -1340 6702 6614 579 95 11 0 chr9 47849574 47849669 -70012958 + L1MB3 LINE L1 6085 6180 -3 459 164 29 21 chr9 47850323 47850426 -70012201 + MER34C LTR ERV1 11 136 -449 345 86 57 14 chr9 47850426 47850496 -70012131 + GA-rich Low_complexity Low_complexity 2 74 0 1890 169 17 9 chr9 47850833 47851177 -70011450 + L1PA16 LINE L1 5820 6166 0 2160 163 54 41 chr9 47851180 47851387 -70011240 + MER34B LTR ERV1 76 279 -286 1510 194 88 0 chr9 47851387 47851706 -70010921 - MER7A DNA MER2_type 0 346 2 2160 163 54 41 chr9 47851706 47851982 -70010645 + MER34B LTR ERV1 279 565 0 833 228 56 0 chr9 47853514 47853711 -70008916 + MER34B LTR ERV1 79 286 -279 2395 313 116 14 chr9 47854359 47856000 -70006627 + L2 LINE L2 1485 3298 -15 205 385 106 0 chr9 47856132 47856311 -70006316 - MIR SINE MIR -31 231 34 289 239 250 0 chr9 47856338 47856426 -70006201 + MER45 DNA AcHobo 1 110 -1471 284 246 0 0 chr9 47856425 47856482 -70006145 + MER45 DNA AcHobo 1516 1572 -9 * 416 156 39 0 chr9 47857262 47857339 -70005288 + AluJ/FRAM SINE Alu 232 311 -1 599 268 180 0 chr9 47857676 47857859 -70004768 + MIR SINE MIR 18 233 -29 1084 267 53 32 chr9 47858163 47858541 -70004086 + L2 LINE L2 2837 3222 -91 2277 103 3 0 chr9 47858899 47859191 -70003436 + AluSg SINE Alu 1 293 -17 226 341 123 18 chr9 47860017 47860187 -70002440 + MIR SINE MIR 53 240 -22 355 325 42 0 chr9 47860276 47860396 -70002231 - L2 LINE L2 -1 3271 3147 207 0 0 0 chr9 47860691 47860714 -70001913 + (T)n Simple_repeat Simple_repeat 1 23 0 2690 92 19 0 chr9 47861557 47861925 -70000702 + THE1C LTR MaLR 1 375 0 2168 107 0 10 chr9 47862240 47862531 -70000096 + AluSx SINE Alu 1 288 -24 1652 199 73 6 chr9 47862556 47862898 -69999729 + MLT1A1 LTR MaLR 1 365 0 23 54 0 0 chr9 47863348 47863385 -69999242 + AT_rich Low_complexity Low_complexity 1 37 0 22 56 0 0 chr9 47863407 47863443 -69999184 + AT_rich Low_complexity Low_complexity 1 36 0 216 336 171 20 chr9 47863870 47864016 -69998611 - L3b LINE CR1 -11 1572 1405 2125 215 36 34 chr9 47864053 47864330 -69998297 + MLT1D LTR MaLR 1 281 -224 2488 71 2 99 chr9 47864330 47864657 -69997970 + THE1A LTR MaLR 1 285 -70 2233 96 3 10 chr9 47864657 47864969 -69997658 - AluSg SINE Alu 0 310 1 2488 71 2 99 chr9 47864969 47865034 -69997593 + THE1A LTR MaLR 285 355 0 2125 215 36 34 chr9 47865034 47865254 -69997373 + MLT1D LTR MaLR 281 499 -6 690 202 12 18 chr9 47865507 47865675 -69996952 + L1MC5 LINE L1 7042 7208 -753 1247 204 41 56 chr9 47865687 47865955 -69996672 + MER58B DNA MER1_type 27 291 -2129 2048 95 26 7 chr9 47865955 47866259 -69996368 + AluSq SINE Alu 1 310 -3 1247 204 41 56 chr9 47866259 47866309 -69996318 + MER58B DNA MER1_type 291 340 -1 1092 246 126 61 chr9 47866365 47866764 -69995863 + L1MC5 LINE L1 7275 7726 -235 1990 144 0 10 chr9 47866764 47867062 -69995565 + AluJb SINE Alu 9 303 -9 1092 246 126 61 chr9 47867062 47867251 -69995376 + L1MC5 LINE L1 7726 7901 -60 212 282 73 36 chr9 47867751 47867861 -69994766 - MIR SINE MIR -36 226 113 2199 80 0 11 chr9 47868208 47868515 -69994112 + AluY SINE Alu 1 304 0 308 263 84 11 chr9 47868595 47868690 -69993937 - MIR SINE MIR -132 130 29 208 345 0 0 chr9 47869066 47869124 -69993503 + L2 LINE L2 3208 3265 -7 2256 113 0 0 chr9 47870000 47870300 -69992327 - AluSc SINE Alu -9 300 1 310 198 44 0 chr9 47870862 47870953 -69991674 + L1MB3 LINE L1 6087 6181 -2 2355 94 0 0 chr9 47872268 47872566 -69990061 + AluSc SINE Alu 1 298 -11 332 299 132 69 chr9 47875100 47875608 -69987019 + L1M2 LINE L1 837 1376 -5473 512 179 86 86 chr9 47875821 47875972 -69986655 - MER5B DNA MER1_type 0 178 28 323 250 0 30 chr9 47878482 47878582 -69984045 + HsTC2 DNA Tc2 1 97 -1801 327 292 91 50 chr9 47878704 47878923 -69983704 - L3 LINE CR1 -146 1431 1204 356 172 35 26 chr9 47879511 47879627 -69983000 + CT-rich Low_complexity Low_complexity 1 117 0 2514 237 32 33 chr9 47880041 47880769 -69981858 + L1ME3A LINE L1 5455 6165 -5 283 333 58 19 chr9 47880978 47881134 -69981493 - MIR SINE MIR -96 166 5 259 202 53 0 chr9 47881142 47881236 -69981391 + (TA)n Simple_repeat Simple_repeat 2 100 0 787 260 143 5 chr9 47884336 47884559 -69978068 - MIR SINE MIR -8 254 1 423 338 81 5 chr9 47884588 47884786 -69977841 - MIR SINE MIR -20 242 30 229 356 8 42 chr9 47884878 47884996 -69977631 - MIR SINE MIR -58 150 37 1500 170 53 28 chr9 47885212 47885411 -69977216 - AluJb SINE Alu 0 312 119 207 100 0 0 chr9 47885411 47885441 -69977186 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1500 170 53 28 chr9 47885441 47885555 -69977072 - AluJb SINE Alu -193 119 9 237 321 0 0 chr9 47885651 47885732 -69976895 + MIR SINE MIR 151 231 -31 1019 199 136 7 chr9 47885830 47886117 -69976510 - MER33 DNA MER1_type 0 324 1 207 0 0 0 chr9 47886633 47886656 -69975971 + (TTTTTG)n Simple_repeat Simple_repeat 1 23 0 276 53 0 0 chr9 47887679 47887717 -69974910 + (TG)n Simple_repeat Simple_repeat 2 39 0 288 327 16 70 chr9 47888666 47888742 -69973885 + MIR3 SINE MIR 3 82 -180 2686 100 16 3 chr9 47888742 47889112 -69973515 - THE1C LTR MaLR 0 375 1 288 327 16 70 chr9 47889112 47889224 -69973403 + MIR3 SINE MIR 82 186 -76 225 0 0 0 chr9 47889701 47889726 -69972901 + (CA)n Simple_repeat Simple_repeat 1 25 0 206 276 35 0 chr9 47890646 47890704 -69971923 - MIR SINE MIR 0 262 203 1033 228 13 4 chr9 47890742 47890970 -69971657 - MIR SINE MIR -1 261 32 2287 117 18 3 chr9 47891757 47892090 -69970537 - THE1C LTR MaLR -37 338 1 196 357 9 27 chr9 47892090 47892202 -69970425 + MIR SINE MIR 77 186 -76 225 0 0 0 chr9 47892679 47892704 -69969923 + (CA)n Simple_repeat Simple_repeat 1 25 0 206 276 35 0 chr9 47893624 47893682 -69968945 - MIR SINE MIR 0 262 203 1030 226 13 4 chr9 47893720 47893946 -69968681 - MIR SINE MIR -1 261 34 234 365 40 0 chr9 47894095 47894169 -69968458 + L2 LINE L2 3150 3226 -46 314 300 0 0 chr9 47894472 47894552 -69968075 - L2 LINE L2 -4 3268 3189 201 74 0 0 chr9 47895138 47895165 -69967462 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 992 218 32 48 chr9 47895783 47896095 -69966532 + L1MD2 LINE L1 6051 6357 -2 22 56 0 0 chr9 47896609 47896645 -69965982 + AT_rich Low_complexity Low_complexity 1 36 0 192 125 0 0 chr9 47898556 47898588 -69964039 + (TC)n Simple_repeat Simple_repeat 1 32 0 640 209 14 0 chr9 47898675 47898814 -69963813 - L1MD2 LINE L1 -19 6340 6200 416 241 28 9 chr9 47898817 47898925 -69963702 - L1MD2 LINE L1 -213 6146 6037 299 170 160 30 chr9 47898912 47899012 -69963615 - L1MDa LINE L1 -4230 2310 2198 * 1562 221 110 14 chr9 47899015 47899498 -69963129 - L1MDa LINE L1 -4381 2159 1631 4045 207 54 13 chr9 47899503 47900906 -69961721 - L1MB8 LINE L1 -3 6986 5512 2485 46 23 7 chr9 47900906 47901212 -69961415 - AluY SINE Alu 0 311 1 3589 249 32 17 chr9 47901213 47902013 -69960614 - L1MB8 LINE L1 -2393 4564 3737 2233 83 3 26 chr9 47902013 47902315 -69960312 - AluSg SINE Alu -15 295 1 3589 249 32 17 chr9 47902315 47902722 -69959905 - L1MB8 LINE L1 -3220 3737 3338 1766 237 100 79 chr9 47902721 47903749 -69958878 - L1MB8 LINE L1 -4571 2388 1330 * 489 251 127 33 chr9 47903766 47904065 -69958562 - LTR15 LTR ERV1 -11 482 156 2729 214 67 25 chr9 47904282 47904928 -69957699 - L1MB8 LINE L1 -5568 1291 619 1643 168 48 28 chr9 47904968 47905325 -69957302 - THE1C LTR MaLR -11 364 1 274 304 0 0 chr9 47905325 47905394 -69957233 - L1MB8 LINE L1 -6258 601 533 2529 222 60 52 chr9 47905394 47906627 -69956000 - L1MDa LINE L1 -4895 1645 17 21 0 0 0 chr9 47907979 47908000 -69954627 + AT_rich Low_complexity Low_complexity 1 21 0 243 369 99 31 chr9 47908268 47908490 -69954137 - L2 LINE L2 0 3272 3036 1113 217 9 0 chr9 47908493 47908714 -69953913 + MER58A DNA MER1_type 2 224 0 507 345 71 21 chr9 47908869 47909107 -69953520 - MIR SINE MIR 0 262 13 290 325 94 69 chr9 47909922 47910519 -69952108 + L2 LINE L2 2597 3258 -14 1048 86 0 0 chr9 47911361 47911489 -69951138 + AluSc SINE Alu 1 128 -181 3773 169 25 0 chr9 47912478 47913107 -69949520 + L1P LINE L1 11 655 -5491 373 219 18 0 chr9 47914111 47914225 -69948402 + (TA)n Simple_repeat Simple_repeat 1 116 0 2324 97 0 0 chr9 47914225 47914514 -69948113 - AluSq SINE Alu -24 289 1 834 169 0 0 chr9 47914525 47914649 -69947978 - FLAM_C SINE Alu -18 125 2 471 248 30 23 chr9 47914649 47914782 -69947845 + MER94 DNA DNA 1 134 0 408 294 9 0 chr9 47914782 47914891 -69947736 + Charlie2b DNA MER1_type 198 307 -2475 264 289 29 19 chr9 47914893 47914997 -69947630 + Charlie2b DNA MER1_type 556 660 -2122 758 223 5 30 chr9 47915073 47915270 -69947357 + Charlie2a DNA MER1_type 1467 1658 -1204 2777 136 45 45 chr9 47915383 47915921 -69946706 - L1PA16 LINE L1 -1 6165 5628 441 0 0 0 chr9 47916076 47916125 -69946502 + (CA)n Simple_repeat Simple_repeat 1 49 0 715 298 66 22 chr9 47917975 47918203 -69944424 - MIR SINE MIR 0 262 25 236 174 22 0 chr9 47918307 47918353 -69944274 - L2 LINE L2 0 3313 3267 910 223 16 5 chr9 47918607 47918795 -69943832 + MIR SINE MIR 52 241 -21 2905 146 47 27 chr9 47918843 47919508 -69943119 - L1MA5 LINE L1 0 6300 5570 219 43 43 22 chr9 47919664 47919710 -69942917 + (TA)n Simple_repeat Simple_repeat 1 47 0 524 288 95 41 chr9 47920588 47920831 -69941796 - MLT1K LTR MaLR -18 570 315 2112 128 0 26 chr9 47920894 47921198 -69941429 - AluSx SINE Alu -14 298 3 364 328 32 11 chr9 47924272 47924458 -69938169 - MER117 DNA MER1_type -3 194 5 339 230 108 0 chr9 47924922 47925070 -69937557 - Charlie1 DNA MER1_type -121 2640 2477 602 320 34 31 chr9 47927484 47927778 -69934849 - L1ME3A LINE L1 -279 5891 5597 22 0 0 0 chr9 47927806 47927828 -69934799 + AT_rich Low_complexity Low_complexity 1 22 0 375 23 0 0 chr9 47927937 47927981 -69934646 + (TA)n Simple_repeat Simple_repeat 2 45 0 257 120 80 0 chr9 47928256 47928306 -69934321 - L1MB2 LINE L1 -7 6164 6111 * 1632 170 0 7 chr9 47928304 47928586 -69934041 - L1MB3 LINE L1 -282 5901 5622 308 288 107 86 chr9 47928674 47928907 -69933720 + MLT1K LTR MaLR 188 425 -163 195 184 0 0 chr9 47929577 47929615 -69933012 + A-rich Low_complexity Low_complexity 3 40 0 251 279 196 38 chr9 47930405 47930563 -69932064 + MIR SINE MIR 13 195 -67 377 324 9 0 chr9 47930943 47931048 -69931579 + L2 LINE L2 3148 3253 -19 292 125 0 25 chr9 47932278 47932358 -69930269 + (TC)n Simple_repeat Simple_repeat 1 78 0 2194 72 4 0 chr9 47932358 47932636 -69929991 - AluY SINE Alu -32 279 1 2442 45 3 7 chr9 47933840 47934149 -69928478 - L1PA7 LINE L1 -2 6152 5845 2017 87 4 0 chr9 47934616 47934868 -69927759 - AluSx SINE Alu -59 253 1 652 136 8 174 chr9 47934874 47935109 -69927518 + L1M2c LINE L1 1955 2150 -4639 4896 189 50 32 chr9 47935117 47935693 -69926934 + L1MC1 LINE L1 4334 4898 -1435 2554 104 16 21 chr9 47935693 47936078 -69926549 + L1PA11 LINE L1 5792 6174 0 483 100 0 0 chr9 47936081 47936151 -69926476 + (TA)n Simple_repeat Simple_repeat 1 70 0 4896 189 50 32 chr9 47936151 47937456 -69925171 + L1MC1 LINE L1 4899 6246 -87 393 125 0 16 chr9 47937588 47937652 -69924975 + THE1A LTR MaLR 293 355 0 * 1062 180 27 9 chr9 47937652 47937873 -69924754 + MLT1D LTR MaLR 275 499 -6 644 202 12 18 chr9 47938127 47938295 -69924332 + L1MC5 LINE L1 7042 7208 -753 1114 210 41 56 chr9 47938307 47938575 -69924052 + MER58B DNA MER1_type 27 291 -2129 2125 99 26 0 chr9 47938575 47938877 -69923750 + AluSq SINE Alu 1 310 -3 1114 210 41 56 chr9 47938877 47938927 -69923700 + MER58B DNA MER1_type 291 340 -1 665 232 107 36 chr9 47938984 47939264 -69923363 + L1MC5 LINE L1 7275 7574 -387 2009 123 0 27 chr9 47939382 47939683 -69922944 + AluSx SINE Alu 9 301 -11 24360 76 4 12 chr9 47939788 47943353 -69919274 + L1P LINE L1 931 4467 -1679 357 316 45 34 chr9 47944937 47945114 -69917513 - MER5A DNA MER1_type 0 189 11 431 247 0 0 chr9 47947404 47947489 -69915138 + FRAM SINE Alu 60 144 -32 1550 210 7 3 chr9 47947684 47947974 -69914653 + AluJo SINE Alu 1 291 -21 197 270 16 16 chr9 47948211 47948274 -69914353 - L2 LINE L2 0 3313 3251 264 280 159 9 chr9 47948303 47948410 -69914217 + L2 LINE L2 3182 3304 -9 38 22 0 0 chr9 47949103 47949148 -69913479 + AT_rich Low_complexity Low_complexity 1 45 0 180 231 0 0 chr9 47949420 47949472 -69913155 + (CA)n Simple_repeat Simple_repeat 2 53 0 673 314 71 48 chr9 47949618 47950182 -69912445 + L2 LINE L2 2593 3164 -108 203 319 19 83 chr9 47950279 47950436 -69912191 + MIR SINE MIR 1 147 -115 2110 287 47 50 chr9 47950519 47951647 -69910980 - L2 LINE L2 0 3313 2190 180 271 0 0 chr9 47951656 47951704 -69910923 - L2 LINE L2 -75 3238 3191 733 285 35 5 chr9 47951781 47951981 -69910646 + L2 LINE L2 3108 3313 0 2160 103 20 10 chr9 47952843 47953144 -69909483 + AluSg SINE Alu 1 304 -6 968 206 62 58 chr9 47954550 47954793 -69907834 + AluJb SINE Alu 1 244 -68 249 108 0 0 chr9 47955560 47955597 -69907030 + (TC)n Simple_repeat Simple_repeat 1 37 0 517 297 89 15 chr9 47955900 47956102 -69906525 + MIR SINE MIR 35 251 -11 656 189 61 0 chr9 47956385 47956517 -69906110 - MIR SINE MIR -70 192 53 528 342 37 36 chr9 47956549 47957001 -69905626 + MER115 DNA AcHobo 3 511 -182 836 141 87 0 chr9 47957028 47957212 -69905415 - L1MA8 LINE L1 -4 6287 6088 2243 100 0 3 chr9 47957578 47957907 -69904720 - AluY SINE Alu 0 311 1 915 190 63 0 chr9 47958238 47958412 -69904215 - MER5A DNA MER1_type 0 189 5 275 260 65 0 chr9 47958513 47958590 -69904037 - MIR SINE MIR -40 222 141 24 0 0 0 chr9 48010180 48010204 -69852423 + AT_rich Low_complexity Low_complexity 1 24 0 884 139 0 0 chr9 48010204 48010326 -69852301 - AluJb SINE Alu -190 122 1 201 38 19 94 chr9 48010506 48010559 -69852068 + (TTTTTG)n Simple_repeat Simple_repeat 5 53 0 963 272 96 81 chr9 48010559 48011100 -69851527 + LTR67 LTR ERVL 9 557 0 23 33 0 0 chr9 48011395 48011425 -69851202 + AT_rich Low_complexity Low_complexity 1 30 0 2602 215 101 75 chr9 48011751 48012532 -69850095 - MER21B LTR ERV1 -50 813 13 267 278 56 0 chr9 48013508 48013580 -69849047 + MIR SINE MIR 184 259 -3 219 36 0 0 chr9 48014644 48014672 -69847955 + (A)n Simple_repeat Simple_repeat 1 28 0 2458 74 3 6 chr9 48014856 48015168 -69847459 - AluY SINE Alu 0 311 1 1358 164 107 93 chr9 48017172 48017557 -69845070 + MLT1B LTR MaLR 1 390 0 423 321 47 16 chr9 48017935 48018125 -69844502 - MER117 DNA MER1_type -1 196 1 2406 77 3 3 chr9 48018369 48018668 -69843959 - AluSg SINE Alu -11 299 1 22 80 0 0 chr9 48018764 48018814 -69843813 + AT_rich Low_complexity Low_complexity 1 50 0 589 108 45 147 chr9 48019579 48019698 -69842929 - L1MA9 LINE L1 -39 6273 6172 363 60 0 0 chr9 48019698 48019748 -69842879 + (TG)n Simple_repeat Simple_repeat 1 50 0 589 108 45 147 chr9 48019748 48019785 -69842842 - L1MA9 LINE L1 -140 6172 6133 1795 87 0 0 chr9 48019788 48020017 -69842610 - AluSq SINE Alu -84 229 1 453 196 128 5 chr9 48020017 48020214 -69842413 - MLT1E3 LTR MaLR -408 216 1 247 262 66 0 chr9 48020392 48020453 -69842174 - L2 LINE L2 -41 3231 3167 336 240 50 95 chr9 48020589 48020768 -69841859 + MLT1J2 LTR MaLR 5 175 -275 360 296 28 0 chr9 48020801 48020909 -69841718 + MLT1J1 LTR MaLR 236 346 -100 183 282 34 86 chr9 48021127 48021244 -69841383 - MIR SINE MIR -77 185 75 488 279 74 41 chr9 48021682 48021926 -69840701 - L2 LINE L2 0 3313 3062 30 0 0 0 chr9 48023225 48023255 -69839372 + AT_rich Low_complexity Low_complexity 1 30 0 222 203 159 14 chr9 48023479 48023548 -69839079 - MIR SINE MIR -10 252 174 2081 128 0 10 chr9 48023760 48024058 -69838569 - AluSx SINE Alu -17 295 1 192 97 0 0 chr9 48024724 48024755 -69837872 + (CCA)n Simple_repeat Simple_repeat 2 32 0 1830 159 3 31 chr9 48024796 48025117 -69837510 - AluJo SINE Alu 0 312 1 958 50 71 79 chr9 48025134 48025226 -69837401 + MER85 DNA T2_type 1 93 -46 1890 123 0 15 chr9 48025226 48025494 -69837133 + AluSg SINE Alu 40 303 -7 958 50 71 79 chr9 48025494 48025541 -69837086 + MER85 DNA T2_type 93 139 0 371 393 43 6 chr9 48025595 48025758 -69836869 + L2 LINE L2 3104 3272 0 192 328 17 0 chr9 48027205 48027263 -69835364 + L2 LINE L2 3255 3313 0 191 271 34 34 chr9 48027281 48027340 -69835287 + L2 LINE L2 2228 2286 -1028 5162 153 44 18 chr9 48027365 48028245 -69834382 + MER4D LTR ERV1 1 903 0 230 140 0 20 chr9 48028379 48028429 -69834198 + (TC)n Simple_repeat Simple_repeat 1 49 0 40913 68 8 5 chr9 48028638 48030064 -69832563 + L1PA5 LINE L1 3 1424 -4730 2356 72 41 0 chr9 48030064 48030357 -69832270 + AluY SINE Alu 1 305 -6 40913 68 8 5 chr9 48030357 48035054 -69827573 + L1PA5 LINE L1 1424 6141 -13 2539 151 152 49 chr9 48035632 48036243 -69826384 + LTR8A LTR ERV1 1 674 -53 613 335 37 0 chr9 48036506 48036721 -69825906 + MIR SINE MIR 34 256 -6 539 248 137 8 chr9 48036954 48037228 -69825399 + L1MC/D LINE L1 5283 5597 -715 363 44 0 0 chr9 48038172 48038217 -69824410 + (CA)n Simple_repeat Simple_repeat 2 46 0 1396 85 0 6 chr9 48038907 48039197 -69823430 + AluSq SINE Alu 19 307 0 2952 108 16 0 chr9 48039585 48040010 -69822617 - MER57B LTR ERV1 -2 432 1 1951 168 0 7 chr9 48041466 48041764 -69820863 + AluSx SINE Alu 2 297 -15 213 252 0 97 chr9 48041907 48042010 -69820617 - L2 LINE L2 -79 3234 3142 2138 138 0 0 chr9 48042230 48042527 -69820100 + AluSx SINE Alu 1 297 -15 235 176 0 68 chr9 48043086 48043160 -69819467 + L1MC1 LINE L1 1875 1943 -4453 320 160 0 0 chr9 48043231 48043281 -69819346 + MER63 DNA MER1_type 703 752 -309 315 274 36 12 chr9 48043277 48043361 -69819266 + MER63 DNA MER1_type 976 1061 0 * 311 277 67 45 chr9 48043436 48043557 -69819070 + L1MC1 LINE L1 2023 2140 -4256 1772 184 24 0 chr9 48043557 48043850 -69818777 + AluJo SINE Alu 1 300 -12 311 277 67 45 chr9 48043850 48043995 -69818632 + L1MC1 LINE L1 2140 2295 -4101 4784 190 54 10 chr9 48044005 48046134 -69816493 + L1MC1 LINE L1 3944 6176 -226 912 143 60 65 chr9 48046135 48046303 -69816324 + AluJo SINE Alu 85 251 -61 1002 216 19 0 chr9 48046304 48046517 -69816110 + L1MC1 LINE L1 6180 6396 -6 338 265 56 101 chr9 48046567 48046835 -69815792 - MLT1J LTR MaLR -132 379 124 574 249 57 21 chr9 48047109 48047302 -69815325 - MIR SINE MIR -27 235 36 1516 193 25 43 chr9 48048951 48049319 -69813308 - MLT1A2 LTR MaLR -13 361 1 757 169 0 0 chr9 48049931 48050049 -69812578 - FLAM_C SINE Alu -25 118 1 5749 118 22 0 chr9 48050121 48051617 -69811010 + L1PA15 LINE L1 4637 6165 0 223 71 48 0 chr9 48051664 48051706 -69810921 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 2175 89 0 46 chr9 48051708 48052033 -69810594 - AluY SINE Alu 0 311 2 300 364 23 7 chr9 48052461 48052716 -69809911 + ERVL LTR ERVL 1391 1600 -4054 1505 196 25 0 chr9 48053234 48053360 -69809267 + AluJo SINE Alu 1 122 -190 306 0 0 0 chr9 48053360 48053394 -69809233 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 1505 196 25 0 chr9 48053394 48053548 -69809079 + AluJo SINE Alu 122 288 -24 491 361 59 13 chr9 48053627 48054087 -69808540 + ERVL LTR ERVL 2347 2827 -2658 1012 317 60 18 chr9 48054237 48054901 -69807726 + ERVL LTR ERVL 2995 3737 -2027 541 277 128 8 chr9 48055374 48055609 -69807018 + ERVL LTR ERVL 4395 4657 -1107 727 297 52 35 chr9 48056507 48056556 -69806071 + ERVL LTR ERVL 4741 4788 -976 1677 177 61 29 chr9 48056556 48056934 -69805693 - MLT1B LTR MaLR 0 390 1 727 297 52 35 chr9 48056934 48057251 -69805376 + ERVL LTR ERVL 4788 5113 -651 1972 114 0 7 chr9 48057615 48057895 -69804732 + AluSg SINE Alu 1 278 -32 902 88 15 0 chr9 48057895 48058032 -69804595 + (GAAA)n Simple_repeat Simple_repeat 2 140 0 678 259 31 75 chr9 48058032 48058260 -69804367 - MER58A DNA MER1_type -1 223 6 2680 36 0 0 chr9 48058558 48058865 -69803762 - AluY SINE Alu -4 307 1 677 294 138 24 chr9 48059889 48060267 -69802360 + L2 LINE L2 2893 3313 0 747 289 71 0 chr9 48060274 48060499 -69802128 - MIR SINE MIR -19 243 3 1267 106 9 97 chr9 48060578 48060804 -69801823 + AluJb SINE Alu 1 206 -106 224 119 0 24 chr9 48060830 48060872 -69801755 + (GAAAA)n Simple_repeat Simple_repeat 2 42 0 326 262 98 41 chr9 48061530 48061652 -69800975 - L1MC4a LINE L1 -1888 5920 5792 297 279 23 0 chr9 48062110 48062196 -69800431 - MIR SINE MIR -48 214 127 231 344 122 8 chr9 48062592 48062723 -69799904 + L2 LINE L2 3168 3313 0 264 359 19 0 chr9 48063978 48064084 -69798543 + L2 LINE L2 2914 3021 -251 407 295 108 0 chr9 48064187 48064316 -69798311 + MER5A DNA MER1_type 10 152 -37 364 272 142 24 chr9 48064890 48065059 -69797568 + MER5A DNA MER1_type 1 189 0 1848 118 0 0 chr9 48066624 48066878 -69795749 + AluSx SINE Alu 1 254 -58 504 98 25 98 chr9 48067290 48067377 -69795250 - L1MC1 LINE L1 -408 5925 5848 2534 47 0 3 chr9 48067377 48067675 -69794952 - AluY SINE Alu -1 310 14 504 98 25 98 chr9 48067675 48067709 -69794918 - L1MC1 LINE L1 -485 5848 5813 2020 137 35 0 chr9 48068589 48068932 -69793695 + L1MC1 LINE L1 5813 6167 -166 549 163 178 23 chr9 48069378 48069507 -69793120 + L1MC1 LINE L1 6185 6333 0 261 0 0 0 chr9 48070528 48070557 -69792070 + (A)n Simple_repeat Simple_repeat 1 29 0 315 0 0 0 chr9 48071191 48071226 -69791401 + (T)n Simple_repeat Simple_repeat 1 35 0 555 246 123 0 chr9 48072434 48072597 -69790030 + MER5A DNA MER1_type 4 189 0 356 271 64 43 chr9 48072597 48072737 -69789890 - MIR3 SINE MIR -48 160 18 753 318 77 52 chr9 48072774 48073203 -69789424 + L2 LINE L2 919 1336 -1978 414 0 0 0 chr9 48073203 48073249 -69789378 + (TC)n Simple_repeat Simple_repeat 1 46 0 1767 173 0 28 chr9 48073249 48073538 -69789089 - AluJb SINE Alu -31 281 1 753 318 77 52 chr9 48073538 48073872 -69788755 + L2 LINE L2 1335 1702 -1612 25 51 0 0 chr9 48074044 48074083 -69788544 + AT_rich Low_complexity Low_complexity 1 39 0 1740 176 0 13 chr9 48074360 48074469 -69788158 + AluJb SINE Alu 9 118 -194 225 0 0 0 chr9 48074469 48074494 -69788133 + (CA)n Simple_repeat Simple_repeat 2 26 0 1740 176 0 13 chr9 48074494 48074686 -69787941 + AluJb SINE Alu 118 306 -6 1420 129 3 104 chr9 48074725 48075012 -69787615 + MER4A LTR ERV1 381 638 -26 332 294 7 7 chr9 48075076 48075219 -69787408 - HAL1b LINE L1 -547 801 659 1600 290 68 58 chr9 48075245 48076317 -69786310 - L2 LINE L2 -54 3259 2176 944 105 0 8 chr9 48076382 48076515 -69786112 + FLAM_C SINE Alu 1 132 -11 202 261 87 14 chr9 48076520 48076589 -69786038 + MER5B DNA MER1_type 52 125 -53 * 672 230 171 0 chr9 48076568 48076790 -69785837 - L2 LINE L2 -1121 2193 1934 337 314 188 23 chr9 48076794 48077097 -69785530 - L2 LINE L2 -1854 1460 1108 200 285 24 91 chr9 48077349 48077466 -69785161 - L2 LINE L2 -2288 1026 922 1765 193 7 0 chr9 48077466 48077766 -69784861 + AluJo SINE Alu 1 302 -10 200 285 24 91 chr9 48077766 48077813 -69784814 - L2 LINE L2 -2392 922 873 324 198 25 32 chr9 48078208 48078365 -69784262 + CT-rich Low_complexity Low_complexity 3 158 0 529 204 30 6 chr9 48078381 48078548 -69784079 + CT-rich Low_complexity Low_complexity 3 173 0 2045 136 17 0 chr9 48078860 48079162 -69783465 - AluSx SINE Alu -5 307 1 345 219 14 0 chr9 48080030 48080103 -69782524 + MER63 DNA MER1_type 678 751 -310 24 0 0 0 chr9 48080128 48080152 -69782475 + AT_rich Low_complexity Low_complexity 1 24 0 218 322 70 17 chr9 48080234 48080349 -69782278 + MIR SINE MIR 34 154 -108 487 254 29 22 chr9 48080997 48081135 -69781492 + MIR SINE MIR 119 257 -5 1825 153 7 0 chr9 48081152 48081439 -69781188 - AluJb SINE Alu -23 289 1 709 331 133 33 chr9 48081855 48082173 -69780454 - L2 LINE L2 0 3313 3028 2443 87 0 3 chr9 48082173 48082482 -69780145 + AluY SINE Alu 1 308 -3 709 331 133 33 chr9 48082482 48083079 -69779548 - L2 LINE L2 -285 3028 2492 1995 153 0 3 chr9 48083079 48083379 -69779248 + AluJb SINE Alu 1 299 -13 709 331 133 33 chr9 48083379 48083544 -69779083 - L2 LINE L2 -821 2492 2345 1192 196 51 122 chr9 48083544 48083937 -69778690 + MLT1A1 LTR MaLR 1 365 0 709 331 133 33 chr9 48083937 48084015 -69778612 - L2 LINE L2 -968 2345 2032 1829 147 29 51 chr9 48084043 48084357 -69778270 + AluJb SINE Alu 1 307 -5 262 332 68 47 chr9 48085500 48085822 -69776805 - L2 LINE L2 -1528 1786 1458 1901 175 11 13 chr9 48085836 48086208 -69776419 + MLT2D LTR ERVL 1 371 -43 255 200 29 29 chr9 48086232 48086247 -69776380 + (TA)n Simple_repeat Simple_repeat 2 16 -55 1820 173 7 3 chr9 48086247 48086531 -69776096 + AluJb SINE Alu 1 285 -27 255 200 29 29 chr9 48086531 48086585 -69776042 + (TA)n Simple_repeat Simple_repeat 15 71 0 186 43 0 0 chr9 48087618 48087641 -69774986 + (CA)n Simple_repeat Simple_repeat 2 24 0 2492 15 0 0 chr9 48087803 48088077 -69774550 + AluYb8 SINE Alu 39 312 -6 449 281 51 44 chr9 48088402 48089027 -69773600 - L1ME LINE L1 -348 5822 5204 1844 102 16 39 chr9 48089149 48089688 -69772939 + MER4A LTR ERV1 1 664 0 931 171 74 0 chr9 48089809 48089984 -69772643 + MER5A DNA MER1_type 2 189 0 347 319 70 25 chr9 48090175 48090420 -69772207 - HAL1b LINE L1 -682 1667 416 2068 142 0 19 chr9 48090468 48090614 -69772013 - AluSx SINE Alu 0 312 165 2301 128 22 8 chr9 48090614 48090973 -69771654 + THE1B LTR MaLR 1 364 0 2068 142 0 19 chr9 48090973 48091144 -69771483 - AluSx SINE Alu -147 165 1 350 274 95 36 chr9 48091154 48091322 -69771305 - L1MEc LINE L1 -4936 1460 1283 696 217 0 8 chr9 48091329 48091340 -69771287 - FLAM_C SINE Alu -174 128 118 417 20 0 0 chr9 48091340 48091390 -69771237 + (TATG)n Simple_repeat Simple_repeat 3 52 0 696 217 0 8 chr9 48091390 48091507 -69771120 - FLAM_C SINE Alu -184 118 1 706 185 0 37 chr9 48091700 48091835 -69770792 - FLAM_C SINE Alu -3 130 1 2065 122 16 13 chr9 48091916 48092227 -69770400 - AluSx SINE Alu 0 312 1 2471 133 41 7 chr9 48092830 48093244 -69769383 - MSTA LTR MaLR 0 428 1 5803 173 61 13 chr9 48093317 48094162 -69768465 + L1MCa LINE L1 19 939 -5487 1844 180 3 0 chr9 48094162 48094467 -69768160 - AluJo SINE Alu -6 306 1 5803 173 61 13 chr9 48094467 48094821 -69767806 + L1MCa LINE L1 939 1275 -5151 251 321 0 0 chr9 48095128 48095212 -69767415 - MER117 DNA MER1_type -107 90 7 835 165 153 0 chr9 48095564 48095734 -69766893 - MER58A DNA MER1_type -28 196 1 467 214 20 0 chr9 48095842 48095940 -69766687 - Tigger7 DNA MER2_type 0 2487 2388 * 1213 184 49 49 chr9 48095937 48096204 -69766423 - Tigger7 DNA MER2_type -466 267 1 217 140 0 100 chr9 48096322 48096372 -69766255 - MIR SINE MIR -106 156 112 206 261 31 15 chr9 48098100 48098165 -69764462 + MIR3 SINE MIR 132 197 -11 657 198 20 64 chr9 48098565 48098767 -69763860 + HsTC2 DNA Tc2 4 196 -1702 1242 162 81 2 chr9 48098774 48099078 -69763549 + MSTC LTR MaLR 1 424 -4 1072 189 29 123 chr9 48099105 48099487 -69763140 + HsTC2 DNA Tc2 256 601 -1297 304 212 0 0 chr9 48099508 48099574 -69763053 + HsTC2 DNA Tc2 1825 1890 -8 182 235 0 0 chr9 48099903 48099937 -69762690 + L2 LINE L2 3268 3301 -12 365 388 25 5 chr9 48100222 48100418 -69762209 + L2 LINE L2 1932 2131 -1183 205 306 106 74 chr9 48100445 48100729 -69761898 + L2 LINE L2 2232 2524 -790 303 177 0 0 chr9 48100905 48100967 -69761660 + (CA)n Simple_repeat Simple_repeat 1 62 0 1310 231 14 94 chr9 48101363 48101403 -69761224 - MLT1C LTR MaLR 0 467 425 818 168 0 0 chr9 48101403 48101534 -69761093 + FLAM_C SINE Alu 1 131 -2 1310 231 14 94 chr9 48101534 48101983 -69760644 - MLT1C LTR MaLR -42 425 17 280 346 37 0 chr9 48102047 48102128 -69760499 - L2 LINE L2 -38 3234 3151 758 258 74 72 chr9 48102229 48102287 -69760340 - MLT1I LTR MaLR -3 406 350 1650 142 116 4 chr9 48102287 48102555 -69760072 - AluJo SINE Alu -10 302 5 758 258 74 72 chr9 48102555 48102899 -69759728 - MLT1I LTR MaLR -59 350 3 255 333 169 14 chr9 48102996 48103215 -69759412 + L2 LINE L2 2832 3084 -188 233 298 94 59 chr9 48103276 48103530 -69759097 - L2 LINE L2 -35 3237 2896 1774 162 7 26 chr9 48103740 48104049 -69758578 - AluJb SINE Alu -9 303 1 22 70 0 0 chr9 48104141 48104184 -69758443 + AT_rich Low_complexity Low_complexity 1 43 0 939 169 88 0 chr9 48104348 48104508 -69758119 + AluSq SINE Alu 1 174 -139 411 183 0 0 chr9 48104513 48104595 -69758032 + (TA)n Simple_repeat Simple_repeat 1 82 0 226 187 33 44 chr9 48105592 48105683 -69756944 + (TTAAA)n Simple_repeat Simple_repeat 4 93 0 2794 181 39 30 chr9 48105804 48106318 -69756309 + L1MC3 LINE L1 7145 7668 -117 2273 112 0 3 chr9 48106318 48106623 -69756004 + AluSg SINE Alu 1 304 -6 2794 181 39 30 chr9 48106623 48106743 -69755884 + L1MC3 LINE L1 7668 7785 0 185 367 0 0 chr9 48106747 48106807 -69755820 + MIR3 SINE MIR 139 198 -10 333 297 84 20 chr9 48107044 48107340 -69755287 - L1ME LINE L1 -384 5782 5468 405 323 13 0 chr9 48107407 48107562 -69755065 - L1ME LINE L1 -816 5330 5174 990 193 7 3 chr9 48107584 48107855 -69754772 + MLT1A1 LTR MaLR 3 365 0 5403 181 110 75 chr9 48107855 48109503 -69753124 + MLT1A1-int LTR MaLR 2 1707 -28 308 318 0 0 chr9 48109501 48109633 -69752994 - L1ME LINE L1 -1155 4991 4860 * 300 312 120 8 chr9 48109673 48109798 -69752829 - MER5A DNA MER1_type -47 142 4 186 43 0 0 chr9 48110193 48110216 -69752411 + (CA)n Simple_repeat Simple_repeat 2 24 0 288 121 22 55 chr9 48110693 48110784 -69751843 + (TATAA)n Simple_repeat Simple_repeat 4 91 0 2220 102 14 0 chr9 48111926 48112220 -69750407 + AluSx SINE Alu 1 298 -14 186 298 64 53 chr9 48112697 48112791 -69749836 + MER5A DNA MER1_type 93 187 -2 * 277 253 132 23 chr9 48112791 48112931 -69749696 - MIR SINE MIR -56 206 48 425 309 7 27 chr9 48113872 48114021 -69748606 - MER5A DNA MER1_type -9 180 35 1027 193 57 15 chr9 48114116 48114381 -69748246 - MER58B DNA MER1_type 0 341 66 883 171 0 59 chr9 48116004 48116191 -69746436 + MER5B DNA MER1_type 3 178 0 2180 132 0 0 chr9 48116350 48116661 -69745966 + AluSx SINE Alu 1 311 -1 288 0 0 0 chr9 48116844 48116876 -69745751 + (CA)n Simple_repeat Simple_repeat 2 33 0 216 0 0 0 chr9 48117702 48117726 -69744901 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 255 61 0 0 chr9 48118720 48118753 -69743874 + (A)n Simple_repeat Simple_repeat 1 33 0 3318 123 47 6 chr9 48119421 48119927 -69742700 + MER1A DNA MER1_type 1 527 0 668 212 85 6 chr9 48119993 48120158 -69742469 - L1PB4 LINE L1 -7 6149 5972 599 92 0 11 chr9 48120597 48120684 -69741943 + Charlie3 DNA MER1_type 2592 2677 -33 297 0 0 0 chr9 48120787 48120820 -69741807 + (TG)n Simple_repeat Simple_repeat 2 34 0 818 174 23 4 chr9 48120871 48121172 -69741455 + AluJ SINE Alu 1 264 -48 1790 197 0 3 chr9 48121174 48121478 -69741149 - AluJo SINE Alu -6 306 4 2135 113 13 3 chr9 48121710 48122012 -69740615 - AluSx SINE Alu -7 305 1 304 238 50 0 chr9 48122240 48122320 -69740307 - L1ME3A LINE L1 -68 6102 6019 21 0 0 0 chr9 48123106 48123127 -69739500 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 48124402 48124424 -69738203 + AT_rich Low_complexity Low_complexity 1 22 0 1857 130 53 20 chr9 48124470 48124770 -69737857 + AluSx SINE Alu 1 310 -2 678 226 8 0 chr9 48125014 48125138 -69737489 + FLAM_A SINE Alu 1 125 -8 2263 114 0 10 chr9 48125148 48125456 -69737171 + AluSx SINE Alu 1 305 -7 189 0 0 0 chr9 48125622 48125643 -69736984 + (T)n Simple_repeat Simple_repeat 1 21 0 383 104 0 15 chr9 48125652 48125719 -69736908 + (TC)n Simple_repeat Simple_repeat 2 67 0 1497 171 51 22 chr9 48125953 48126247 -69736380 + AluJb SINE Alu 3 304 0 688 156 35 14 chr9 48126315 48126456 -69736171 + L1MB3 LINE L1 6039 6182 -1 1894 158 24 61 chr9 48127117 48127424 -69735203 + MLT1A1 LTR MaLR 1 318 -47 351 0 0 0 chr9 48127424 48127463 -69735164 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2105 89 11 14 chr9 48127465 48127747 -69734880 - AluY SINE Alu -30 281 1 1894 158 24 61 chr9 48127747 48127815 -69734812 + MLT1A1 LTR MaLR 319 365 0 230 264 31 31 chr9 48128432 48128561 -69734066 + L2 LINE L2 2853 2981 -291 2042 160 3 0 chr9 48128717 48129024 -69733603 + AluSx SINE Alu 1 308 -4 905 125 0 22 chr9 48129158 48129294 -69733333 + FLAM_C SINE Alu 1 133 0 25 51 0 0 chr9 48129483 48129522 -69733105 + AT_rich Low_complexity Low_complexity 1 39 0 1910 162 7 0 chr9 48129814 48130122 -69732505 + AluSx SINE Alu 1 310 -2 941 204 11 0 chr9 48130368 48130554 -69732073 - MER5A DNA MER1_type 0 189 2 885 141 122 0 chr9 48132637 48132793 -69729834 + FAM SINE Alu 1 175 0 314 339 57 26 chr9 48132940 48133170 -69729457 + L2 LINE L2 2830 3066 -206 181 356 119 0 chr9 48133245 48133346 -69729281 + L2 LINE L2 3129 3241 -31 2339 97 0 22 chr9 48134411 48134730 -69727897 - AluSx SINE Alu 0 312 1 297 286 0 0 chr9 48134941 48135025 -69727602 - L1ME LINE L1 -467 5654 5571 22 56 0 0 chr9 48135045 48135081 -69727546 + AT_rich Low_complexity Low_complexity 1 36 0 589 188 36 0 chr9 48135118 48135256 -69727371 - L1MB4 LINE L1 -1 6179 6037 1887 184 0 0 chr9 48135300 48135605 -69727022 + AluJb SINE Alu 1 305 -7 294 170 52 131 chr9 48135645 48135798 -69726829 + L1ME LINE L1 5651 5791 -330 366 337 86 15 chr9 48136389 48136656 -69725971 - L2 LINE L2 -609 2705 2420 270 328 8 8 chr9 48137453 48137575 -69725052 - MER117 DNA MER1_type 0 197 76 27 49 0 0 chr9 48139017 48139058 -69723569 + AT_rich Low_complexity Low_complexity 1 41 0 306 254 40 63 chr9 48139061 48139187 -69723440 + L1MC4 LINE L1 6600 6722 -1320 2374 101 3 3 chr9 48139270 48139577 -69723050 + AluSq SINE Alu 1 307 -6 2172 113 6 3 chr9 48140140 48140451 -69722176 - AluSq SINE Alu -1 312 1 2486 56 3 3 chr9 48141228 48141532 -69721095 + AluY SINE Alu 1 304 -7 895 223 77 18 chr9 48141715 48141935 -69720692 - MIR SINE MIR -28 234 2 348 333 48 20 chr9 48142237 48142384 -69720243 + MIR3 SINE MIR 3 153 -55 381 162 18 0 chr9 48143159 48143242 -69719385 + L1ME2 LINE L1 6082 6170 0 1342 191 12 97 chr9 48144603 48144944 -69717683 + AluJb SINE Alu 1 312 0 368 261 197 23 chr9 48145676 48145894 -69716733 - L2 LINE L2 -36 3277 3022 2153 102 26 71 chr9 48146438 48146819 -69715808 + THE1B LTR MaLR 1 364 0 473 245 291 0 chr9 48147039 48147235 -69715392 + MIR SINE MIR 8 260 -2 210 171 0 0 chr9 48148087 48148128 -69714499 + (TAG)n Simple_repeat Simple_repeat 1 41 0 1813 189 0 7 chr9 48148561 48148868 -69713759 - AluJo SINE Alu -7 305 1 234 164 0 0 chr9 48148917 48148972 -69713655 + (TA)n Simple_repeat Simple_repeat 2 56 0 1352 174 98 33 chr9 48148973 48149249 -69713378 - AluJo SINE Alu -18 294 1 25 31 0 0 chr9 48149725 48149757 -69712870 + AT_rich Low_complexity Low_complexity 1 32 0 774 249 19 78 chr9 48150015 48150213 -69712414 + MIR SINE MIR 10 189 -73 1880 167 0 0 chr9 48150213 48150501 -69712126 + AluJo SINE Alu 1 288 -24 774 249 19 78 chr9 48150501 48150571 -69712056 + MIR SINE MIR 189 262 0 28 29 0 0 chr9 48151745 48151780 -69710847 + AT_rich Low_complexity Low_complexity 1 35 0 2188 122 0 13 chr9 48151896 48152200 -69710427 - AluSx SINE Alu -12 300 1 21 36 0 0 chr9 48152206 48152234 -69710393 + AT_rich Low_complexity Low_complexity 1 28 0 201 260 0 40 chr9 48152537 48152587 -69710040 + L2 LINE L2 3207 3254 -18 * 661 280 119 25 chr9 48152571 48152967 -69709660 - L2 LINE L2 -314 2999 2556 2087 136 3 3 chr9 48153612 48153914 -69708713 - AluSq SINE Alu -11 302 1 250 195 26 0 chr9 48154354 48154431 -69708196 + (CATATA)n Simple_repeat Simple_repeat 4 82 0 228 300 61 166 chr9 48156037 48156561 -69706066 - L2 LINE L2 0 3272 2804 503 349 116 32 chr9 48156631 48157072 -69705555 - L2 LINE L2 -615 2699 2222 260 267 0 0 chr9 48157091 48157151 -69705476 + (TG)n Simple_repeat Simple_repeat 2 61 0 2180 118 3 0 chr9 48157338 48157635 -69704992 + AluSg1 SINE Alu 1 298 -11 1439 206 154 3 chr9 48158492 48158836 -69703791 + MSTD LTR MaLR 1 396 0 244 176 0 39 chr9 48159807 48159858 -69702769 - L2 LINE L2 0 3313 3265 2350 76 0 0 chr9 48161105 48161396 -69701231 + AluSx SINE Alu 5 295 -17 1354 201 84 4 chr9 48161408 48161516 -69701111 + AluJo SINE Alu 3 101 -211 351 0 0 0 chr9 48161516 48161555 -69701072 + (TC)n Simple_repeat Simple_repeat 2 40 0 * 741 79 0 0 chr9 48161554 48161655 -69700972 + (TA)n Simple_repeat Simple_repeat 1 101 0 1354 201 84 4 chr9 48161555 48161819 -69700808 + AluJo SINE Alu 101 297 -15 243 0 0 0 chr9 48162138 48162165 -69700462 + (TG)n Simple_repeat Simple_repeat 2 28 0 1535 146 27 53 chr9 48162165 48162461 -69700166 - AluJb SINE Alu -23 289 2 2366 78 3 7 chr9 48162660 48162967 -69699660 + AluY SINE Alu 1 306 -5 205 222 0 28 chr9 48163767 48163839 -69698788 + A-rich Low_complexity Low_complexity 2 71 0 1648 188 27 10 chr9 48164777 48165070 -69697557 + AluJo SINE Alu 1 298 -14 223 191 106 0 chr9 48165172 48165219 -69697408 + MIR SINE MIR 193 244 -18 200 260 40 0 chr9 48165186 48165236 -69697391 + L2 LINE L2 3257 3308 -5 * 192 40 0 0 chr9 48165382 48165407 -69697220 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1095 65 0 0 chr9 48166017 48166156 -69696471 - Alu SINE Alu 0 310 172 291 352 128 9 chr9 48166159 48166378 -69696249 - L3 LINE CR1 -28 1549 1305 1982 131 0 13 chr9 48167171 48167469 -69695158 - AluSx SINE Alu -17 295 2 225 0 0 0 chr9 48167524 48167549 -69695078 + (TTTTTG)n Simple_repeat Simple_repeat 1 25 0 1153 110 0 0 chr9 48167677 48167840 -69694787 + L1PA10 LINE L1 5993 6155 -13 189 147 0 0 chr9 48168009 48168043 -69694584 + (ATGGTG)n Simple_repeat Simple_repeat 2 35 0 208 313 83 10 chr9 48168427 48168523 -69694104 - L2 LINE L2 -8 3305 3203 1692 173 18 3 chr9 48168827 48169110 -69693517 + AluJb SINE Alu 1 287 -25 1858 173 0 3 chr9 48169133 48169434 -69693193 + AluJo SINE Alu 1 300 -12 1620 163 76 7 chr9 48170220 48170508 -69692119 + AluJb SINE Alu 5 312 0 1746 81 182 0 chr9 48170513 48170760 -69691867 + AluSx SINE Alu 21 312 0 441 238 124 0 chr9 48170887 48170992 -69691635 - FLAM_C SINE Alu -14 119 2 204 163 0 0 chr9 48171168 48171211 -69691416 + (TAA)n Simple_repeat Simple_repeat 2 44 0 324 271 169 34 chr9 48171232 48171409 -69691218 - MIR SINE MIR -59 203 3 1961 131 0 7 chr9 48171570 48171852 -69690775 + AluSx SINE Alu 18 297 -15 2203 112 0 0 chr9 48171882 48172169 -69690458 + AluSg1 SINE Alu 3 289 -20 1152 86 33 0 chr9 48172563 48172714 -69689913 + AluSg/x SINE Alu 154 309 0 1518 86 95 0 chr9 48172989 48173199 -69689428 - MER30 DNA MER1_type 0 230 1 297 289 0 33 chr9 48173930 48174020 -69688607 + MER5B DNA MER1_type 6 92 -86 261 286 91 13 chr9 48174079 48174156 -69688471 + MER5B DNA MER1_type 96 178 0 726 190 95 45 chr9 48174163 48174342 -69688285 - MER5A DNA MER1_type 0 189 2 371 213 125 0 chr9 48174419 48174499 -69688128 - MER5B DNA MER1_type -83 95 6 2469 81 3 3 chr9 48174508 48174818 -69687809 - AluSp SINE Alu -2 311 2 2288 105 0 22 chr9 48174954 48175268 -69687359 - AluSq SINE Alu -6 307 1 1279 229 58 75 chr9 48176076 48176260 -69686367 + L1ME3A LINE L1 5630 5816 -354 764 130 7 43 chr9 48176260 48176398 -69686229 + FLAM_C SINE Alu 1 133 0 1279 229 58 75 chr9 48176398 48176749 -69685878 + L1ME3A LINE L1 5816 6156 -14 279 357 70 83 chr9 48176776 48177076 -69685551 + L2 LINE L2 2925 3220 -52 1533 217 3 3 chr9 48177415 48177714 -69684913 + AluJb SINE Alu 1 299 -13 309 211 78 11 chr9 48179255 48179345 -69683282 + MIR3 SINE MIR 106 201 -7 207 0 0 0 chr9 48179919 48179942 -69682685 + (A)n Simple_repeat Simple_repeat 1 23 0 323 257 246 0 chr9 48182508 48182683 -69679944 + MARNA DNA Mariner 20 237 -349 2295 108 7 0 chr9 48182746 48183052 -69679575 + AluSx SINE Alu 1 308 -4 2191 103 0 23 chr9 48183749 48184059 -69678568 - AluSp SINE Alu -2 311 9 1901 176 0 0 chr9 48184072 48184367 -69678260 - AluJo SINE Alu -17 295 1 1037 89 94 11 chr9 48184403 48184594 -69678033 - L1MB4 LINE L1 -1 6179 5973 453 273 93 25 chr9 48184693 48184854 -69677773 + MER5B DNA MER1_type 7 178 0 331 344 15 15 chr9 48184867 48184998 -69677629 - MER5A DNA MER1_type -5 184 54 877 213 20 40 chr9 48185323 48185537 -69677090 - MIR SINE MIR -51 211 3 207 0 0 0 chr9 48185779 48185802 -69676825 + (GGAA)n Simple_repeat Simple_repeat 4 26 0 2471 133 41 7 chr9 48186162 48186576 -69676051 - MSTA LTR MaLR 0 428 1 5803 173 61 13 chr9 48186649 48187494 -69675133 + L1MCa LINE L1 19 939 -5487 1809 180 3 3 chr9 48187494 48187800 -69674827 - AluJo SINE Alu -6 306 1 5803 173 61 13 chr9 48187800 48188154 -69674473 + L1MCa LINE L1 939 1275 -5151 251 321 0 0 chr9 48188461 48188545 -69674082 - MER117 DNA MER1_type -107 90 7 835 165 153 0 chr9 48188897 48189067 -69673560 - MER58A DNA MER1_type -28 196 1 467 214 20 0 chr9 48189175 48189273 -69673354 - Tigger7 DNA MER2_type 0 2487 2388 * 1213 184 49 49 chr9 48189270 48189537 -69673090 - Tigger7 DNA MER2_type -2220 267 1 217 140 0 100 chr9 48189655 48189705 -69672922 - MIR SINE MIR -106 156 112 206 261 31 15 chr9 48191433 48191498 -69671129 + MIR3 SINE MIR 132 197 -11 734 198 20 64 chr9 48191898 48192100 -69670527 + HsTC2 DNA Tc2 4 196 -1702 1337 162 81 2 chr9 48192107 48192411 -69670216 + MSTC LTR MaLR 1 424 -4 1206 189 29 123 chr9 48192438 48192820 -69669807 + HsTC2 DNA Tc2 256 601 -1297 330 221 0 0 chr9 48192839 48192907 -69669720 + HsTC2 DNA Tc2 1820 1887 -11 295 388 25 5 chr9 48193556 48193752 -69668875 + L2 LINE L2 1932 2131 -1183 187 308 94 17 chr9 48193779 48193896 -69668731 + L2 LINE L2 2232 2357 -957 303 177 0 0 chr9 48194239 48194301 -69668326 + (CA)n Simple_repeat Simple_repeat 1 62 0 1465 229 14 94 chr9 48194697 48194737 -69667890 - MLT1C LTR MaLR 0 467 425 786 152 8 15 chr9 48194737 48194869 -69667758 + FLAM_C SINE Alu 1 131 -2 1465 229 14 94 chr9 48194869 48195318 -69667309 - MLT1C LTR MaLR -42 425 17 253 346 37 0 chr9 48195381 48195462 -69667165 - L2 LINE L2 -38 3234 3151 230 246 53 0 chr9 48195563 48195620 -69667007 - MLT1I LTR MaLR -3 406 347 352 255 73 19 chr9 48195621 48195867 -69666760 - FRAM SINE Alu 0 166 51 1783 197 0 0 chr9 48196287 48196592 -69666035 - AluJb SINE Alu -7 305 1 624 188 36 0 chr9 48196636 48196774 -69665853 + L1MB4 LINE L1 6037 6179 -1 22 56 0 0 chr9 48196811 48196847 -69665780 + AT_rich Low_complexity Low_complexity 1 36 0 332 291 0 0 chr9 48196865 48196951 -69665676 + L1ME LINE L1 5569 5654 -467 2061 125 0 3 chr9 48197162 48197451 -69665176 + AluSx SINE Alu 1 288 -24 298 256 26 0 chr9 48198043 48198121 -69664506 + C-rich Low_complexity Low_complexity 2 81 0 239 263 0 30 chr9 48198161 48198260 -69664367 + MIR SINE MIR 47 142 -120 429 230 0 0 chr9 48198704 48198830 -69663797 + GA-rich Low_complexity Low_complexity 1 126 0 26 64 0 0 chr9 48200075 48200122 -69662505 + AT_rich Low_complexity Low_complexity 1 47 0 1989 60 4 0 chr9 48200292 48200540 -69662087 + L1PA6 LINE L1 5906 6154 0 1388 179 40 36 chr9 48201543 48201661 -69660966 + AluJo SINE Alu 1 117 -195 315 0 0 0 chr9 48201661 48201696 -69660931 + (CA)n Simple_repeat Simple_repeat 2 36 0 1388 179 40 36 chr9 48201696 48201878 -69660749 + AluJo SINE Alu 117 302 -10 1905 165 6 16 chr9 48201989 48202304 -69660323 + AluJb SINE Alu 1 312 0 207 0 0 0 chr9 48202506 48202529 -69660098 + (TAGA)n Simple_repeat Simple_repeat 1 23 0 183 129 0 0 chr9 48202531 48202562 -69660065 + (TA)n Simple_repeat Simple_repeat 2 32 0 284 275 0 11 chr9 48202562 48202653 -69659974 - L1MC4 LINE L1 -1339 6703 6614 230 178 0 109 chr9 48202566 48202667 -69659960 + L1MC4 LINE L1 6614 6703 -1339 * 315 0 0 0 chr9 48202787 48202822 -69659805 + (TC)n Simple_repeat Simple_repeat 1 35 0 * 327 25 0 0 chr9 48202821 48202861 -69659766 + (CA)n Simple_repeat Simple_repeat 1 40 0 243 0 0 0 chr9 48204053 48204080 -69658547 + (GTTTG)n Simple_repeat Simple_repeat 1 27 0 2866 139 85 20 chr9 48204593 48205145 -69657482 - LTR49 LTR ERV1 -4 591 4 2506 154 45 2 chr9 48205688 48206130 -69656497 - LTR29 LTR ERV1 0 622 162 322 310 0 43 chr9 48207971 48208087 -69654540 - L2 LINE L2 -25 3247 3137 770 183 34 46 chr9 48208667 48208842 -69653785 + FAM SINE Alu 1 48 -1 1992 128 0 14 chr9 48209048 48209337 -69653290 + AluJb SINE Alu 5 289 -23 222 256 0 49 chr9 48210173 48210255 -69652372 + L2 LINE L2 3227 3304 -9 385 308 145 0 chr9 48210741 48210900 -69651727 + MIR3 SINE MIR 19 200 -8 276 284 95 24 chr9 48211692 48211861 -69650766 - MIR SINE MIR -69 193 13 2340 98 0 19 chr9 48212372 48212689 -69649938 - AluSx SINE Alu -1 311 1 237 83 0 0 chr9 48214881 48214917 -69647710 + (TCC)n Simple_repeat Simple_repeat 3 38 0 189 0 0 0 chr9 48215380 48215401 -69647226 + (CGGG)n Simple_repeat Simple_repeat 3 23 0 25 51 0 0 chr9 48215455 48215494 -69647133 + GC_rich Low_complexity Low_complexity 1 39 0 204 326 22 0 chr9 48216459 48216548 -69646079 + MER5B DNA MER1_type 4 94 -84 1194 213 142 42 chr9 48216839 48217289 -69645338 + MLT1D LTR MaLR 1 495 -10 234 258 138 69 chr9 48217324 48217483 -69645144 - MIR SINE MIR -12 250 81 2186 87 3 21 chr9 48217539 48217850 -69644777 + AluY SINE Alu 1 306 0 491 131 90 66 chr9 48217951 48218073 -69644554 + L1MC1 LINE L1 6209 6333 0 2303 98 0 0 chr9 48218174 48218470 -69644157 + AluSx SINE Alu 1 296 -16 759 249 144 9 chr9 48218553 48218922 -69643705 - LTR16A LTR ERVL 0 450 2 2493 111 8 32 chr9 48218922 48219299 -69643328 + MSTA LTR MaLR 1 368 -60 357 292 162 16 chr9 48219448 48219633 -69642994 + MIR SINE MIR 1 212 -50 491 204 0 0 chr9 48219739 48219827 -69642800 - FLAM_A SINE Alu -27 115 28 258 191 0 0 chr9 48220094 48220136 -69642491 - Tigger2 DNA MER2_type -12 2706 2665 216 97 0 0 chr9 48220214 48220245 -69642382 + (CA)n Simple_repeat Simple_repeat 2 32 0 180 279 0 0 chr9 48220446 48220489 -69642138 + L2 LINE L2 3187 3229 -43 940 112 8 0 chr9 48220760 48220915 -69641712 - AluJb SINE Alu 0 313 158 1255 150 0 15 chr9 48220918 48220982 -69641645 - AluJb SINE Alu -115 197 134 2356 95 3 3 chr9 48220982 48221287 -69641340 - AluSq SINE Alu -8 305 1 1255 150 0 15 chr9 48221287 48221422 -69641205 - AluJb SINE Alu -178 134 1 25 31 0 0 chr9 48221845 48221877 -69640750 + AT_rich Low_complexity Low_complexity 1 32 0 223 288 30 0 chr9 48222114 48222180 -69640447 - MIR SINE MIR -63 145 78 2330 105 3 0 chr9 48222229 48222533 -69640094 + AluSq SINE Alu 1 305 -8 912 157 20 0 chr9 48222551 48222704 -69639923 + AluJb SINE Alu 145 300 -12 1387 171 112 8 chr9 48223389 48223647 -69638980 + AluJo SINE Alu 1 285 -27 622 98 28 112 chr9 48223718 48223861 -69638766 + L1MA9 LINE L1 6182 6312 0 235 277 106 28 chr9 48224156 48224297 -69638330 - L2 LINE L2 -2 3311 3160 1861 86 4 0 chr9 48224308 48224541 -69638086 + AluSx SINE Alu 1 234 -78 289 236 135 11 chr9 48224692 48224781 -69637846 + MLT1H LTR MaLR 118 217 -332 206 363 44 0 chr9 48224787 48224878 -69637749 - L2 LINE L2 -217 3096 3002 1624 175 17 20 chr9 48224935 48225232 -69637395 + AluJb SINE Alu 1 296 -16 374 201 121 9 chr9 48225723 48225833 -69636794 + MLT1G1 LTR MaLR 420 587 -8 2412 106 0 3 chr9 48225848 48226160 -69636467 - AluSx SINE Alu -1 311 1 964 192 104 0 chr9 48226170 48226363 -69636264 + MER20 DNA MER1_type 7 219 0 509 286 48 79 chr9 48226376 48226729 -69635898 - L1MC/D LINE L1 -2212 5596 5255 2507 91 0 0 chr9 48226735 48227043 -69635584 + AluSx SINE Alu 5 312 0 616 258 25 6 chr9 48227554 48227717 -69634910 + MIR SINE MIR 32 197 -65 213 236 0 0 chr9 48227844 48227899 -69634728 - MIR SINE MIR -108 154 100 429 259 0 50 chr9 48227966 48228105 -69634522 + L3 LINE CR1 1209 1340 -237 294 223 11 75 chr9 48228147 48228241 -69634386 + L2 LINE L2 3185 3272 0 185 250 23 0 chr9 48228249 48228293 -69634334 + L3 LINE CR1 1383 1427 -150 1769 150 37 14 chr9 48228433 48228727 -69633900 + AluJb SINE Alu 1 301 -11 378 259 0 74 chr9 48228826 48228961 -69633666 + MIR SINE MIR 29 153 -109 413 253 296 0 chr9 48229199 48229385 -69633242 - MIR SINE MIR -9 253 13 1076 134 0 0 chr9 48230301 48230473 -69632154 + AluSg/x SINE Alu 134 305 0 253 341 45 8 chr9 48230608 48230740 -69631887 + L1MC4 LINE L1 7597 7733 -309 1966 150 175 3 chr9 48230788 48231154 -69631473 - MSTB1 LTR MaLR 0 432 4 25 31 0 0 chr9 48231214 48231246 -69631381 + AT_rich Low_complexity Low_complexity 1 32 0 3706 66 2 10 chr9 48231253 48231737 -69630890 + L1PA8 LINE L1 5692 6171 -1 307 266 87 33 chr9 48231738 48231801 -69630826 + L1MC4 LINE L1 7804 7862 -180 1810 170 0 27 chr9 48231801 48232101 -69630526 - AluJb SINE Alu -19 293 2 307 266 87 33 chr9 48232101 48232221 -69630406 + L1MC4 LINE L1 7862 7997 -45 1946 142 34 7 chr9 48232221 48232517 -69630110 - AluSx SINE Alu -6 306 3 1557 196 82 82 chr9 48232837 48232943 -69629684 - L1MC4 LINE L1 -3 8039 7934 2066 148 0 0 chr9 48232943 48233246 -69629381 - AluJb SINE Alu -9 303 1 1557 196 82 82 chr9 48233246 48233664 -69628963 - L1MC4 LINE L1 -107 7935 7515 1197 167 28 33 chr9 48233932 48234147 -69628480 + AluJb SINE Alu 84 297 -15 2213 104 3 14 chr9 48234217 48234514 -69628113 - AluSq SINE Alu -17 296 3 2129 130 7 3 chr9 48234519 48234820 -69627807 - AluSx SINE Alu -10 302 1 260 265 15 0 chr9 48234936 48235004 -69627623 - MIR3 SINE MIR -27 181 113 362 291 70 59 chr9 48235007 48235145 -69627482 + L1ME4a LINE L1 5647 5782 -339 2248 117 3 3 chr9 48235145 48235453 -69627174 + AluSg SINE Alu 1 308 -2 362 291 70 59 chr9 48235453 48235671 -69626956 + L1ME4a LINE L1 5782 6007 -114 1552 191 3 57 chr9 48235849 48236163 -69626464 + AluJb SINE Alu 1 297 -15 1110 189 42 67 chr9 48236207 48236492 -69626135 - AluJb SINE Alu 0 312 35 1220 189 9 4 chr9 48236547 48236775 -69625852 + AluSx SINE Alu 1 229 -83 742 175 16 67 chr9 48236884 48237078 -69625549 - AluJb SINE Alu -100 212 29 1673 122 0 4 chr9 48237128 48237358 -69625269 + AluSx SINE Alu 1 229 -83 270 0 0 0 chr9 48237378 48237408 -69625219 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 282 205 0 0 chr9 48237527 48237605 -69625022 + (TGGA)n Simple_repeat Simple_repeat 4 81 0 2300 105 23 0 chr9 48237853 48238157 -69624470 - AluSx SINE Alu 0 312 2 1201 281 54 34 chr9 48238739 48239265 -69623362 - L2 LINE L2 0 3313 2779 2065 141 3 0 chr9 48239277 48239575 -69623052 + AluSx SINE Alu 1 299 -13 186 133 0 0 chr9 48239626 48239656 -69622971 + (A)n Simple_repeat Simple_repeat 1 30 0 464 268 8 8 chr9 48239674 48239797 -69622830 - L2 LINE L2 -557 2757 2635 2509 78 0 0 chr9 48239990 48240285 -69622342 - AluSq SINE Alu -13 300 6 315 233 144 22 chr9 48240356 48240526 -69622101 + MIR SINE MIR 11 144 -64 2004 303 77 44 chr9 48241127 48242406 -69620221 - ERVL LTR ERVL -1327 4437 3065 26 30 0 0 chr9 48243085 48243118 -69619509 + AT_rich Low_complexity Low_complexity 1 33 0 1339 163 45 107 chr9 48243165 48243452 -69619175 - MER68 LTR ERV1 0 562 297 2699 153 16 38 chr9 48243452 48243840 -69618787 + MER66B LTR ERV1 1 377 -109 1980 141 34 0 chr9 48243840 48244131 -69618496 + AluJb SINE Alu 1 301 -11 2699 153 16 38 chr9 48244131 48244239 -69618388 + MER66B LTR ERV1 377 486 0 1339 163 45 107 chr9 48244239 48244288 -69618339 - MER68 LTR ERV1 -265 297 247 1627 170 14 31 chr9 48245018 48245339 -69617288 - AluJb SINE Alu 0 316 1 535 118 84 17 chr9 48245348 48245467 -69617160 - L1MA7 LINE L1 -6 6285 6159 737 317 10 0 chr9 48245629 48245828 -69616799 + MIR SINE MIR 46 246 -16 698 193 7 7 chr9 48245929 48246064 -69616563 + FLAM_C SINE Alu 1 135 -8 1421 192 15 8 chr9 48246645 48246911 -69615716 + AluJb SINE Alu 1 268 -44 356 0 23 0 chr9 48246934 48246978 -69615649 + (CA)n Simple_repeat Simple_repeat 2 46 0 270 282 123 56 chr9 48247006 48247216 -69615411 + MIR SINE MIR 17 236 -26 1161 115 6 12 chr9 48247480 48247645 -69614982 - FRAM SINE Alu -13 163 1 2285 48 0 4 chr9 48247941 48248212 -69614415 - AluY SINE Alu -13 298 29 4157 112 33 80 chr9 48249178 48249993 -69612634 + L1PA12 LINE L1 5380 6156 -12 2272 106 3 0 chr9 48250036 48250337 -69612290 + AluSp SINE Alu 2 303 -10 1912 126 58 0 chr9 48251024 48251331 -69611296 + AluSg SINE Alu 2 324 0 2417 88 0 0 chr9 48251979 48252275 -69610352 + AluSp SINE Alu 1 296 -17 29 0 0 0 chr9 48252370 48252399 -69610228 + AT_rich Low_complexity Low_complexity 1 29 0 726 179 16 8 chr9 48252473 48252596 -69610031 + FLAM_A SINE Alu 1 124 -9 2029 90 3 24 chr9 48252914 48253202 -69609425 + AluSx SINE Alu 1 282 -30 22 0 0 0 chr9 48253304 48253326 -69609301 + AT_rich Low_complexity Low_complexity 1 22 0 1801 142 0 35 chr9 48253435 48253746 -69608881 - AluJb SINE Alu -2 310 11 23 0 0 0 chr9 48254611 48254634 -69607993 + AT_rich Low_complexity Low_complexity 1 23 0 678 110 0 0 chr9 48255206 48255297 -69607330 + FLAM_C SINE Alu 35 125 -18 892 161 0 19 chr9 48255654 48255809 -69606818 + FRAM SINE Alu 2 153 -13 506 302 93 6 chr9 48255835 48256017 -69606610 - MIR3 SINE MIR -8 200 3 1936 177 0 0 chr9 48256561 48256871 -69605756 - AluJb SINE Alu -1 311 2 1279 124 85 10 chr9 48256955 48257156 -69605471 + AluSg SINE Alu 1 216 -94 785 185 0 0 chr9 48257222 48257357 -69605270 - MER2 DNA MER2_type -209 136 2 2097 113 0 3 chr9 48257588 48257908 -69604719 + AluSx SINE Alu 1 319 0 735 285 71 37 chr9 48257977 48258159 -69604468 + L1ME4a LINE L1 5465 5639 -482 1648 188 3 20 chr9 48258159 48258457 -69604170 + AluJb SINE Alu 1 293 -19 735 285 71 37 chr9 48258457 48258681 -69603946 + L1ME4a LINE L1 5639 5885 -236 2322 95 7 0 chr9 48258732 48259036 -69603591 - AluY SINE Alu -5 306 1 1080 90 0 0 chr9 48259039 48259172 -69603455 - AluSq/x SINE Alu -180 133 1 391 258 39 8 chr9 48259207 48259335 -69603292 + L1ME4a LINE L1 5988 6119 -2 250 232 321 9 chr9 48259946 48260058 -69602569 + MIR3 SINE MIR 12 158 -50 777 275 16 5 chr9 48260390 48260579 -69602048 + MIR SINE MIR 1 191 -71 244 240 39 124 chr9 48260673 48260802 -69601825 - MIR3 SINE MIR -1 207 90 432 296 92 7 chr9 48261358 48261510 -69601117 - MIR SINE MIR -69 193 29 2071 106 35 0 chr9 48262373 48262657 -69599970 + AluSg SINE Alu 1 294 -16 360 0 0 0 chr9 48262657 48262697 -69599930 + (TA)n Simple_repeat Simple_repeat 2 41 0 2246 118 0 3 chr9 48262697 48263001 -69599626 + AluSx SINE Alu 3 305 -7 463 267 0 33 chr9 48263586 48263706 -69598921 - L2 LINE L2 -7 3306 3191 196 191 149 0 chr9 48264886 48264933 -69597694 - L2 LINE L2 -526 2788 2735 334 225 39 51 chr9 48264947 48265125 -69597502 - L1MC4 LINE L1 -2 8040 7865 247 297 0 0 chr9 48265125 48265189 -69597438 - L2 LINE L2 -563 2751 2688 549 252 0 0 chr9 48265442 48265573 -69597054 - MIR SINE MIR -3 259 129 25 0 0 0 chr9 48265595 48265620 -69597007 + AT_rich Low_complexity Low_complexity 1 25 0 1771 144 0 0 chr9 48265628 48265885 -69596742 + AluSx SINE Alu 1 257 -55 356 269 113 31 chr9 48266396 48266556 -69596071 + MER5B DNA MER1_type 2 174 -4 186 43 0 0 chr9 48266569 48266592 -69596035 + (T)n Simple_repeat Simple_repeat 1 23 0 1752 110 16 4 chr9 48266605 48266859 -69595768 + AluY SINE Alu 1 257 -54 436 363 11 9 chr9 48266874 48267071 -69595556 - MIR3 SINE MIR -7 201 6 246 225 208 42 chr9 48267755 48267875 -69594752 - MER5A DNA MER1_type -6 183 44 * 548 172 159 55 chr9 48267770 48267886 -69594741 + MER5A DNA MER1_type 30 166 -23 2051 104 3 21 chr9 48267886 48268230 -69594397 - AluSx SINE Alu 0 339 1 548 172 159 55 chr9 48268230 48268257 -69594370 + MER5A DNA MER1_type 166 189 0 188 400 0 0 chr9 48268596 48268666 -69593961 + MIR SINE MIR 82 151 -111 247 305 60 24 chr9 48268829 48268996 -69593631 - LTR23 LTR ERV1 0 437 265 329 318 89 28 chr9 48269001 48269180 -69593447 + L2 LINE L2 2562 2751 -563 559 153 20 0 chr9 48269180 48269278 -69593349 - AluJo SINE Alu -14 298 199 703 202 0 8 chr9 48269278 48269402 -69593225 - AluJo SINE Alu -177 125 3 1097 94 3 161 chr9 48269573 48269859 -69592768 + LTR49 LTR ERV1 2 242 -353 291 213 0 0 chr9 48269876 48269951 -69592676 + CT-rich Low_complexity Low_complexity 2 76 0 1408 195 15 15 chr9 48269958 48270225 -69592402 - AluJb SINE Alu -45 267 1 636 196 104 78 chr9 48270225 48270548 -69592079 + LTR48 LTR ERV1 240 787 0 2322 86 13 0 chr9 48270630 48270931 -69591696 - AluSp SINE Alu -8 305 1 189 0 0 0 chr9 48271022 48271043 -69591584 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 2263 118 0 0 chr9 48271046 48271342 -69591285 - AluSg SINE Alu -14 296 1 352 167 12 48 chr9 48271707 48271791 -69590836 - L1MC4 LINE L1 -182 7860 7780 307 266 0 51 chr9 48271807 48271886 -69590741 + MER58 DNA MER1_type 2 76 -310 2468 76 3 0 chr9 48271908 48272209 -69590418 - AluY SINE Alu -9 302 1 2181 127 0 10 chr9 48272216 48272530 -69590097 - AluSx SINE Alu -1 311 1 404 54 45 45 chr9 48272838 48272949 -69589678 + (TA)n Simple_repeat Simple_repeat 1 111 0 227 73 73 0 chr9 48273070 48273125 -69589502 + (TA)n Simple_repeat Simple_repeat 1 59 0 1698 166 26 12 chr9 48273135 48273478 -69589149 + Tigger1 DNA MER2_type 418 765 -1653 324 215 0 0 chr9 48273460 48273525 -69589102 + AluYb8 SINE Alu 102 166 -142 * 1499 180 0 91 chr9 48273548 48273887 -69588740 + AluJo SINE Alu 1 308 -4 296 128 0 0 chr9 48274009 48274056 -69588571 + Tigger1 DNA MER2_type 1097 1143 -1275 6584 110 30 68 chr9 48274056 48274511 -69588116 + Tigger1 DNA MER2_type 1116 1586 -832 2224 103 3 0 chr9 48274511 48274801 -69587826 + AluSx SINE Alu 1 291 -21 6584 110 30 68 chr9 48274801 48275039 -69587588 + Tigger1 DNA MER2_type 1586 1831 -587 1755 165 3 32 chr9 48275039 48275324 -69587303 + AluJb SINE Alu 17 293 -19 6584 110 30 68 chr9 48275324 48275873 -69586754 + Tigger1 DNA MER2_type 1831 2313 -105 6423 69 0 9 chr9 48276034 48276114 -69586513 - L1PA8 LINE L1 -4 6168 6089 2492 46 0 23 chr9 48276114 48276420 -69586207 - AluY SINE Alu -12 299 1 6423 69 0 9 chr9 48276420 48277402 -69585225 - L1PA8 LINE L1 -83 6089 5090 481 151 183 0 chr9 48277402 48277495 -69585132 + Tigger1 DNA MER2_type 2309 2418 0 267 136 0 23 chr9 48277495 48277539 -69585088 + LTR16C LTR ERVL 434 476 -15 251 321 123 0 chr9 48277678 48277784 -69584843 + MIR SINE MIR 45 163 -99 533 72 65 36 chr9 48278683 48279079 -69583548 + (TA)n Simple_repeat Simple_repeat 1 407 0 1373 186 72 0 chr9 48279081 48279344 -69583283 - AluJb SINE Alu -30 282 1 2569 110 9 33 chr9 48279350 48279769 -69582858 - Tigger1 DNA MER2_type -2000 418 10 832 273 57 34 chr9 48279830 48280214 -69582413 - LTR16C LTR ERVL -92 399 7 2206 122 0 0 chr9 48280600 48280894 -69581733 - AluSg SINE Alu -16 294 1 2259 91 3 0 chr9 48281587 48281896 -69580731 - AluSp SINE Alu 0 310 1 1539 91 0 5 chr9 48281917 48282115 -69580512 - AluSg/x SINE Alu -15 297 101 549 127 73 45 chr9 48282629 48282739 -69579888 + FLAM_A SINE Alu 26 138 -4 234 279 0 47 chr9 48282852 48282938 -69579689 - MIR SINE MIR -71 191 110 2314 125 0 0 chr9 48284337 48284642 -69577985 - AluSx SINE Alu -5 307 3 1027 270 86 44 chr9 48284990 48285757 -69576870 + L1MCa LINE L1 1280 2156 -4451 334 241 89 0 chr9 48287812 48287891 -69574736 + MIR3 SINE MIR 82 167 -41 619 222 82 0 chr9 48288052 48288187 -69574440 - FRAM SINE Alu -30 146 1 351 293 136 7 chr9 48288550 48288697 -69573930 - MIR3 SINE MIR -11 197 32 833 305 190 20 chr9 48288766 48289219 -69573408 - L3 LINE CR1 -1 1576 1047 2509 78 0 0 chr9 48289459 48289768 -69572859 - AluY SINE Alu -2 309 1 344 286 118 115 chr9 48289786 48290143 -69572484 + L2 LINE L2 2914 3271 -1 21 0 0 0 chr9 48290611 48290632 -69571995 + AT_rich Low_complexity Low_complexity 1 21 0 2131 123 10 0 chr9 48290833 48291125 -69571502 + AluSg SINE Alu 1 295 -15 22 0 0 0 chr9 48291690 48291712 -69570915 + AT_rich Low_complexity Low_complexity 1 22 0 304 263 136 19 chr9 48292731 48292944 -69569683 + HAL1 LINE L1 143 380 -2127 375 306 112 6 chr9 48293004 48293174 -69569453 + HAL1 LINE L1 478 665 -1842 2110 104 0 40 chr9 48293174 48293472 -69569155 + AluSx SINE Alu 1 315 0 241 35 0 0 chr9 48293472 48293501 -69569126 + (GAAA)n Simple_repeat Simple_repeat 2 176 0 279 256 25 25 chr9 48293601 48293722 -69568905 + HAL1 LINE L1 823 943 -1564 1678 171 22 0 chr9 48294183 48294458 -69568169 - AluSx SINE Alu -31 281 1 2342 102 7 0 chr9 48294549 48294854 -69567773 + AluSq SINE Alu 1 307 -6 2151 102 0 0 chr9 48295336 48295619 -69567008 + AluSq SINE Alu 1 283 -30 2328 66 3 22 chr9 48296066 48296383 -69566244 - AluY SINE Alu 0 311 1 2227 111 0 22 chr9 48296394 48296709 -69565918 - AluSg SINE Alu 0 310 3 871 158 0 0 chr9 48298198 48298331 -69564296 + FLAM_A SINE Alu 1 133 0 933 150 0 0 chr9 48298465 48298598 -69564029 + FLAM_C SINE Alu 1 133 0 2340 93 3 3 chr9 48298725 48299027 -69563600 - AluSx SINE Alu -10 302 1 867 308 107 28 chr9 48299310 48300027 -69562600 - L1MEc LINE L1 -5402 994 221 460 274 20 30 chr9 48300161 48300362 -69562265 - L1MEc LINE L1 -6162 234 36 2239 123 3 0 chr9 48300717 48301019 -69561608 + AluSx SINE Alu 1 303 -9 488 256 40 45 chr9 48301253 48301452 -69561175 - MER63A DNA MER1_type 0 210 13 2172 98 3 0 chr9 48301452 48301738 -69560889 + AluSx SINE Alu 1 287 -25 531 108 47 0 chr9 48301738 48301867 -69560760 + (TA)n Simple_repeat Simple_repeat 2 136 0 1261 137 10 34 chr9 48302561 48302766 -69559861 - AluJb SINE Alu -11 301 102 1997 137 10 0 chr9 48302811 48303103 -69559524 - AluSx SINE Alu -16 296 2 1004 163 6 0 chr9 48303638 48303810 -69558817 - MER2 DNA MER2_type -172 173 1 828 272 52 71 chr9 48304045 48304468 -69558159 - LTR16B LTR ERVL -47 417 3 1682 158 43 7 chr9 48304868 48305147 -69557480 + AluJo SINE Alu 3 291 -21 834 206 14 58 chr9 48305340 48305427 -69557200 - L1MDa LINE L1 -4962 1578 1489 1635 167 44 0 chr9 48305427 48305728 -69556899 - AluJb SINE Alu 0 313 1 834 206 14 58 chr9 48305728 48305950 -69556677 - L1MDa LINE L1 -5051 1489 1280 1909 184 0 0 chr9 48306027 48306359 -69556268 + AluJb SINE Alu 1 312 0 217 0 0 0 chr9 48306307 48306535 -69556092 + (GAAA)n Simple_repeat Simple_repeat 3 230 0 715 171 85 22 chr9 48306544 48306764 -69555863 - LTR8A LTR ERV1 -107 609 315 9591 149 10 9 chr9 48306765 48307945 -69554682 - L1M1 LINE L1 -696 5609 4422 3975 96 39 90 chr9 48307945 48308645 -69553982 + MER4A LTR ERV1 1 664 0 9591 149 10 9 chr9 48308645 48309580 -69553047 - L1M1 LINE L1 -1883 4422 3490 669 254 38 38 chr9 48309579 48309815 -69552812 - L1MDa LINE L1 -5935 605 370 * 672 144 16 0 chr9 48309957 48310082 -69552545 - L1M2 LINE L1 -623 5677 5551 1175 154 0 0 chr9 48310089 48310271 -69552356 - AluSg/x SINE Alu -5 307 126 1627 131 0 35 chr9 48310272 48310660 -69551967 - L1M2 LINE L1 -742 5558 5180 962 243 139 8 chr9 48310663 48310930 -69551697 - L1MDa LINE L1 -6218 322 21 2293 115 0 3 chr9 48311399 48311712 -69550915 - AluSx SINE Alu 0 312 1 619 325 43 11 chr9 48311802 48311990 -69550637 + MER91A DNA MER1_type 3 196 0 1374 204 81 66 chr9 48312628 48313085 -69549542 + MER31B LTR ERV1 1 464 -2 213 370 39 24 chr9 48313244 48313371 -69549256 + MIR SINE MIR 23 151 -57 670 157 0 0 chr9 48313394 48313502 -69549125 - FLAM_A SINE Alu -9 133 26 321 324 49 0 chr9 48314079 48314181 -69548446 + MIR SINE MIR 40 146 -62 414 319 22 7 chr9 48314287 48314425 -69548202 - MIR SINE MIR -106 156 17 1126 191 0 0 chr9 48314610 48314799 -69547828 + MER5A DNA MER1_type 1 189 0 2252 104 0 13 chr9 48314912 48315219 -69547408 + AluSg SINE Alu 1 303 -7 236 261 0 0 chr9 48315945 48315991 -69546636 + L2 LINE L2 3263 3308 -5 2204 109 3 0 chr9 48316082 48316384 -69546243 - AluSq SINE Alu -10 303 1 322 255 112 0 chr9 48316417 48316515 -69546112 - MIR SINE MIR -6 256 148 2200 114 0 0 chr9 48316647 48316945 -69545682 - AluSx SINE Alu -14 298 1 353 323 78 52 chr9 48317622 48317891 -69544736 + L2 LINE L2 2378 2653 -661 26 0 0 0 chr9 48318468 48318494 -69544133 + AT_rich Low_complexity Low_complexity 1 26 0 264 211 0 0 chr9 48318920 48318972 -69543655 - L2 LINE L2 0 3313 3262 318 258 258 15 chr9 48319640 48319772 -69542855 - MIR3 SINE MIR -24 184 21 468 245 35 0 chr9 48320045 48320158 -69542469 - MIR3 SINE MIR -3 205 88 183 100 0 0 chr9 48320369 48320399 -69542228 + (GAAAA)n Simple_repeat Simple_repeat 2 31 0 28 79 0 0 chr9 48320937 48321000 -69541627 + AT_rich Low_complexity Low_complexity 1 63 0 2116 128 0 0 chr9 48321359 48321648 -69540979 - AluSg SINE Alu -19 291 3 1108 76 0 0 chr9 48321656 48321787 -69540840 - AluSg SINE Alu -179 131 1 954 163 0 31 chr9 48322132 48322292 -69540335 - FRAM SINE Alu -10 166 12 2365 91 3 3 chr9 48323182 48323480 -69539147 - AluSp SINE Alu -15 298 1 323 257 104 3 chr9 48323755 48323915 -69538712 - MIR SINE MIR -1 261 42 282 56 0 0 chr9 48324024 48324060 -69538567 + (TATG)n Simple_repeat Simple_repeat 3 38 0 410 258 84 60 chr9 48324156 48324323 -69538304 + MIR SINE MIR 20 190 -72 389 252 111 7 chr9 48324944 48325079 -69537548 + MER117 DNA MER1_type 1 149 -48 2297 107 0 0 chr9 48325373 48325671 -69536956 - AluSx SINE Alu -13 299 2 229 301 29 22 chr9 48326436 48326572 -69536055 + HAL1 LINE L1 1455 1591 -916 520 149 234 9 chr9 48326616 48326723 -69535904 + AluJb SINE Alu 1 131 -181 1833 188 0 0 chr9 48326828 48327136 -69535491 + AluJb SINE Alu 1 308 -4 784 291 63 0 chr9 48327660 48327897 -69534730 - MIR SINE MIR 0 262 11 21 36 0 0 chr9 48328622 48328650 -69533977 + AT_rich Low_complexity Low_complexity 1 28 0 375 295 58 23 chr9 48328747 48328920 -69533707 + L1M3 LINE L1 4524 4702 -1444 2541 179 74 20 chr9 48328957 48329560 -69533067 + L1MB8 LINE L1 4646 5351 -827 2219 93 3 16 chr9 48329560 48329873 -69532754 + AluSc SINE Alu 1 309 0 2541 179 74 20 chr9 48329873 48330327 -69532300 + L1MB8 LINE L1 5351 5779 -399 2280 101 3 16 chr9 48330328 48330644 -69531983 + AluSx SINE Alu 1 312 0 564 176 15 102 chr9 48330672 48330819 -69531808 + L1MB8 LINE L1 5981 6107 -71 2208 110 3 0 chr9 48330819 48331119 -69531508 + AluSg SINE Alu 2 302 -8 564 176 15 102 chr9 48331119 48331176 -69531451 + L1MB8 LINE L1 6107 6167 -11 235 238 160 82 chr9 48331246 48331515 -69531112 + L1M3 LINE L1 4723 5012 -1134 2323 119 0 0 chr9 48331609 48331919 -69530708 + AluSx SINE Alu 1 310 -2 369 214 226 57 chr9 48331958 48332206 -69530421 + L1M3 LINE L1 5256 5545 -623 335 361 42 0 chr9 48332666 48332785 -69529842 + L2 LINE L2 3149 3272 0 2186 96 0 48 chr9 48333117 48333431 -69529196 + AluSx SINE Alu 1 299 -13 953 105 0 0 chr9 48334260 48334393 -69528234 + FLAM_C SINE Alu 1 133 0 1145 133 0 6 chr9 48334500 48334673 -69527954 - AluJb SINE Alu -38 274 103 29 47 0 0 chr9 48334819 48334862 -69527765 + AT_rich Low_complexity Low_complexity 1 43 0 394 222 290 0 chr9 48335441 48335603 -69527024 - MER3 DNA MER1_type 0 209 1 2178 111 0 7 chr9 48336989 48337287 -69525340 + AluSg SINE Alu 1 296 -14 240 253 69 11 chr9 48337579 48337666 -69524961 + HAL1 LINE L1 2306 2397 -110 192 40 0 0 chr9 48337733 48337758 -69524869 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1708 166 14 4 chr9 48337933 48338062 -69524565 + AluSx SINE Alu 1 127 -185 297 0 0 0 chr9 48338062 48338095 -69524532 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 1708 166 14 4 chr9 48338095 48338242 -69524385 + AluSx SINE Alu 127 280 -32 407 302 149 20 chr9 48339162 48339457 -69523170 - HAL1 LINE L1 -1023 1484 1152 504 303 90 14 chr9 48339901 48340090 -69522537 + MIR3 SINE MIR 6 206 -2 2485 74 0 3 chr9 48340205 48340517 -69522110 + AluY SINE Alu 1 311 0 24 53 0 0 chr9 48340551 48340589 -69522038 + AT_rich Low_complexity Low_complexity 1 38 0 1442 133 197 9 chr9 48340740 48341070 -69521557 - L1MB4 LINE L1 0 6180 5789 3340 191 115 21 chr9 48341074 48341762 -69520865 - MER21B LTR ERV1 -11 852 81 2382 76 6 16 chr9 48341762 48342076 -69520551 + AluY SINE Alu 1 311 0 3340 191 115 21 chr9 48342076 48342162 -69520465 - MER21B LTR ERV1 -782 81 5 911 149 6 52 chr9 48342302 48342476 -69520151 - AluSg/x SINE Alu -17 292 127 801 189 65 7 chr9 48342640 48342793 -69519834 + FRAM SINE Alu 1 159 -17 513 224 28 84 chr9 48343141 48343284 -69519343 - MIR SINE MIR -86 176 42 207 0 0 0 chr9 48344636 48344659 -69517968 + (CA)n Simple_repeat Simple_repeat 2 24 0 1664 136 88 0 chr9 48345212 48345485 -69517142 + AluJb SINE Alu 1 297 -15 2074 102 0 25 chr9 48346304 48346588 -69516039 + AluSp SINE Alu 1 277 -36 207 0 0 0 chr9 48346593 48346616 -69516011 + (CAAA)n Simple_repeat Simple_repeat 1 23 0 831 152 0 0 chr9 48346670 48346795 -69515832 + AluJb SINE Alu 1 125 -187 1999 130 14 3 chr9 48346800 48347092 -69515535 + AluSx SINE Alu 6 300 -12 285 335 25 75 chr9 48348278 48348340 -69514287 + L2 LINE L2 2721 2785 -529 2086 104 45 7 chr9 48348340 48348628 -69513999 + AluSg SINE Alu 4 302 -8 285 335 25 75 chr9 48348628 48348804 -69513823 + L2 LINE L2 2785 2947 -367 2292 67 0 11 chr9 48348822 48349129 -69513498 + AluY SINE Alu 1 304 0 249 287 35 70 chr9 48349296 48349439 -69513188 + L2 LINE L2 1884 2021 -1293 288 306 158 54 chr9 48349819 48350041 -69512586 + L2 LINE L2 2713 2957 -357 510 91 0 0 chr9 48350412 48350489 -69512138 - HY3 scRNA scRNA -2 99 23 394 71 71 0 chr9 48351142 48351212 -69511415 - L1MA4A LINE L1 0 6303 6229 187 261 45 45 chr9 48351447 48351535 -69511092 + MIR SINE MIR 118 205 -57 238 301 88 22 chr9 48351847 48351983 -69510644 - MIR SINE MIR -105 157 13 418 218 62 109 chr9 48352092 48352285 -69510342 + L2 LINE L2 3103 3286 -27 335 280 253 22 chr9 48352851 48353076 -69509551 + L1ME LINE L1 4946 5222 -924 1667 83 0 5 chr9 48353077 48353294 -69509333 - AluSg/x SINE Alu -12 300 85 303 188 0 5 chr9 48353335 48353411 -69509216 + L1ME LINE L1 5409 5482 -680 1678 141 0 79 chr9 48353701 48354043 -69508584 + AluJb SINE Alu 5 322 0 517 256 71 48 chr9 48354149 48354418 -69508209 + MER20B DNA MER1_type 278 552 -231 460 276 50 72 chr9 48354418 48354482 -69508145 - MER5A DNA MER1_type 0 189 125 1450 168 4 32 chr9 48354482 48354732 -69507895 + AluJo SINE Alu 1 243 -69 460 276 50 72 chr9 48354732 48354758 -69507869 - MER5A DNA MER1_type -64 125 100 195 69 0 0 chr9 48354758 48354787 -69507840 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 460 276 50 72 chr9 48354787 48354876 -69507751 - MER5A DNA MER1_type -89 100 13 228 219 0 27 chr9 48354890 48354963 -69507664 + MER20B DNA MER1_type 551 621 -162 259 282 86 6 chr9 48355068 48355231 -69507396 + L1ME LINE L1 5683 5858 -312 2337 75 3 13 chr9 48355463 48355769 -69506858 - AluSp SINE Alu -10 303 1 348 323 48 32 chr9 48355933 48356057 -69506570 + MIR SINE MIR 16 141 -67 2391 68 0 3 chr9 48356074 48356368 -69506259 + AluSq SINE Alu 12 304 -9 230 349 75 27 chr9 48356813 48356959 -69505668 - MIR SINE MIR -62 146 12 983 88 7 22 chr9 48360417 48360554 -69502073 + AluSq/x SINE Alu 1 135 -178 2013 107 17 10 chr9 48360554 48360853 -69501774 + AluSx SINE Alu 1 301 -11 211 231 231 75 chr9 48360991 48361151 -69501476 + MIR SINE MIR 72 256 -6 411 310 138 17 chr9 48361227 48361459 -69501168 - L2 LINE L2 -1 3312 3053 1378 78 128 0 chr9 48362190 48362394 -69500233 - MER30 DNA MER1_type 0 230 1 479 291 120 30 chr9 48362578 48362812 -69499815 + L3 LINE CR1 1230 1484 -93 220 327 39 39 chr9 48362938 48363042 -69499585 + MIR3 SINE MIR 3 106 -102 2151 113 17 0 chr9 48363138 48363431 -69499196 - AluSx SINE Alu -14 298 1 321 260 35 42 chr9 48363769 48363912 -69498715 - L1MC/D LINE L1 -344 5818 5681 300 373 19 32 chr9 48363933 48364091 -69498536 - L2 LINE L2 -39 3274 3119 873 180 180 0 chr9 48364617 48364817 -69497810 - MER46A DNA MER2_type 0 236 1 401 271 78 18 chr9 48364845 48365011 -69497616 - MIR SINE MIR -16 246 71 708 195 35 39 chr9 48365454 48365685 -69496942 + L1ME2 LINE L1 5696 5925 -239 295 266 95 0 chr9 48365687 48365823 -69496804 + L1ME2 LINE L1 6001 6161 -1 2017 113 0 4 chr9 48365855 48366130 -69496497 + AluSq SINE Alu 1 274 -39 3524 107 23 21 chr9 48366430 48366956 -69495671 + MER1A DNA MER1_type 1 527 0 2246 115 13 3 chr9 48367799 48368103 -69494524 - AluSc SINE Alu -2 307 1 5521 103 18 42 chr9 48368797 48369691 -69492936 + MER4D LTR ERV1 1 872 0 2202 108 3 0 chr9 48369869 48370193 -69492434 - AluSg SINE Alu 0 310 1 985 320 185 26 chr9 48370208 48370802 -69491825 + L2 LINE L2 149 647 -2667 2093 118 0 7 chr9 48370802 48371091 -69491536 + AluSg SINE Alu 1 287 -23 985 320 185 26 chr9 48371091 48371214 -69491413 + L2 LINE L2 647 749 -2565 2016 140 7 10 chr9 48371214 48371522 -69491105 - AluSx SINE Alu -5 307 1 985 320 185 26 chr9 48371522 48371657 -69490970 + L2 LINE L2 749 1138 -2176 463 282 109 55 chr9 48371665 48371885 -69490742 + L2 LINE L2 1444 1675 -1639 1456 109 5 0 chr9 48373193 48373385 -69489242 + AluSx SINE Alu 1 193 -119 747 215 82 10 chr9 48374173 48374368 -69488259 + MER3 DNA MER1_type 1 209 0 403 370 80 23 chr9 48374639 48375034 -69487593 + L1MEd LINE L1 931 1437 -1053 1015 123 14 0 chr9 48375196 48375365 -69487262 + AluSg/x SINE Alu 134 304 0 492 195 80 18 chr9 48375527 48375640 -69486987 - L2 LINE L2 -16 3297 3178 415 200 25 58 chr9 48375646 48375766 -69486861 - L2 LINE L2 -277 3036 2921 341 194 28 0 chr9 48376363 48376435 -69486192 + MER97a DNA MER1_type? 39 112 -782 1271 96 0 0 chr9 48376445 48376611 -69486016 + AluY SINE Alu 136 301 -10 3925 125 11 20 chr9 48376913 48377552 -69485075 + MER41B LTR ERV1 3 635 0 540 269 156 16 chr9 48377719 48377975 -69484652 - L2 LINE L2 -13 3300 3009 216 184 0 0 chr9 48377987 48378036 -69484591 + (CCAA)n Simple_repeat Simple_repeat 2 50 0 2166 112 7 0 chr9 48378254 48378548 -69484079 + AluSx SINE Alu 1 296 -16 400 156 26 0 chr9 48380699 48380776 -69481851 - L1ME2 LINE L1 -9 6155 6077 2203 105 3 10 chr9 48380812 48381118 -69481509 + AluSg SINE Alu 1 304 -6 2327 107 0 7 chr9 48381934 48382244 -69480383 - AluSq SINE Alu -3 310 3 1901 158 3 7 chr9 48382800 48383119 -69479508 - AluSx SINE Alu 0 312 5 1119 278 61 20 chr9 48383813 48384331 -69478296 - MER34 LTR ERV1 0 585 1 2121 141 0 13 chr9 48384666 48384970 -69477657 - AluSg SINE Alu -10 300 1 22 35 0 0 chr9 48386201 48386230 -69476397 + AT_rich Low_complexity Low_complexity 1 29 0 2209 71 11 7 chr9 48386644 48386963 -69475664 - AluY SINE Alu 0 320 1 625 224 0 0 chr9 48387370 48387504 -69475123 + MER20 DNA MER1_type 86 219 0 1767 170 0 45 chr9 48388120 48388431 -69474196 + AluJb SINE Alu 4 300 -12 3804 71 73 6 chr9 48388669 48389188 -69473439 - MER41A LTR ERV1 0 554 1 1869 159 11 85 chr9 48389600 48390035 -69472592 - MER57A LTR ERV1 0 403 1 2398 95 7 0 chr9 48390543 48390849 -69471778 - AluSp SINE Alu -5 308 1 983 188 67 18 chr9 48390874 48391098 -69471529 + MER46A DNA MER2_type 1 235 -1 764 121 57 0 chr9 48391289 48391413 -69471214 - AluSg SINE Alu -179 131 1 211 85 43 0 chr9 48392518 48392565 -69470062 + (TA)n Simple_repeat Simple_repeat 2 50 0 2294 75 10 0 chr9 48392567 48392861 -69469766 - AluSp SINE Alu -16 297 1 802 184 181 51 chr9 48392864 48393157 -69469470 + LTR49 LTR ERV1 8 338 -257 * 1161 179 18 5 chr9 48393127 48393351 -69469276 + LTR29 LTR ERV1 396 622 0 2516 81 3 0 chr9 48393427 48393736 -69468891 - AluSp SINE Alu -3 310 1 1771 109 142 0 chr9 48394867 48395134 -69467493 - AluSx SINE Alu -7 305 1 2233 107 3 3 chr9 48395213 48395512 -69467115 - AluSp SINE Alu -14 299 1 557 85 0 12 chr9 48395579 48395661 -69466966 + AluY SINE Alu 1 81 -237 245 191 206 0 chr9 48396228 48396291 -69466336 + MER34 LTR ERV1 461 536 -6 2225 108 0 0 chr9 48396352 48396647 -69465980 + AluSq SINE Alu 1 295 -18 336 234 32 0 chr9 48396698 48396792 -69465835 - Charlie1 DNA MER1_type -1200 1561 1465 611 110 0 0 chr9 48396849 48396940 -69465687 - LTR17 LTR ERV1 0 780 690 * 3651 134 77 78 chr9 48396912 48398310 -69464317 + pTR5 LTR ERV1 720 2437 -1 * 5262 76 3 4 chr9 48398310 48399006 -69463621 - LTR17 LTR ERV1 -80 700 6 1154 127 14 66 chr9 48399095 48399307 -69463320 - AluJo SINE Alu -107 205 5 3073 89 9 18 chr9 48399470 48399908 -69462719 + MER57B LTR ERV1 1 434 0 1342 160 71 73 chr9 48400088 48400581 -69462046 - LTR49 LTR ERV1 -22 600 89 453 254 72 4 chr9 48400593 48401091 -69461536 - L1MEc LINE L1 -922 5293 4719 1311 261 49 62 chr9 48401098 48402188 -69460439 - L1MEc LINE L1 -1792 4423 3401 3114 116 39 14 chr9 48402233 48402751 -69459876 - LTR10A LTR ERV1 -62 547 17 1835 115 30 19 chr9 48402751 48403020 -69459607 - AluSx SINE Alu -40 272 1 1382 198 151 36 chr9 48403020 48403523 -69459104 - L1MEc LINE L1 -2801 3414 2823 2177 119 0 10 chr9 48403523 48403826 -69458801 - AluSq SINE Alu -13 300 1 1382 198 151 36 chr9 48403826 48403952 -69458675 - L1MEc LINE L1 -3392 2823 2713 396 195 39 39 chr9 48403991 48404119 -69458508 - L1MEc LINE L1 -4412 1984 1857 * 1229 205 3 14 chr9 48404106 48404394 -69458233 - L1M4 LINE L1 -1322 4824 4540 330 154 46 0 chr9 48404408 48404473 -69458154 - AluSx SINE Alu -3 299 232 1098 110 7 7 chr9 48404477 48404632 -69457995 - AluSx SINE Alu -157 155 1 463 204 260 0 chr9 48404633 48404829 -69457798 - L1M4 LINE L1 -1599 4547 4301 2183 116 0 13 chr9 48405271 48405574 -69457053 + AluSg SINE Alu 2 300 -10 21 36 0 0 chr9 48405672 48405700 -69456927 + AT_rich Low_complexity Low_complexity 1 28 0 2255 103 3 0 chr9 48405843 48406135 -69456492 - AluSq SINE Alu -18 295 3 2209 116 0 3 chr9 48406441 48406742 -69455885 + AluSx SINE Alu 2 301 -11 21 0 0 0 chr9 48407218 48407239 -69455388 + AT_rich Low_complexity Low_complexity 1 21 0 511 279 100 24 chr9 48407461 48407493 -69455134 - L1ME LINE L1 -344 5818 5790 2397 90 0 6 chr9 48407493 48407805 -69454822 - AluSq SINE Alu -3 310 1 2144 128 6 6 chr9 48407809 48408121 -69454506 - AluSx SINE Alu 0 312 1 511 279 100 24 chr9 48408121 48408504 -69454123 - L1ME LINE L1 -374 5788 5366 2115 100 31 3 chr9 48408745 48409036 -69453591 + AluSq SINE Alu 1 299 -14 2093 119 3 0 chr9 48409130 48409423 -69453204 + AluSp SINE Alu 2 295 -18 222 359 55 8 chr9 48409917 48409959 -69452668 - MER5B DNA MER1_type -19 159 120 2572 44 0 0 chr9 48409959 48410256 -69452371 + AluY SINE Alu 1 297 -14 222 359 55 8 chr9 48410256 48410341 -69452286 - MER5B DNA MER1_type -58 120 26 24 77 0 0 chr9 48411637 48411689 -69450938 + AT_rich Low_complexity Low_complexity 1 52 0 2126 122 0 7 chr9 48411693 48411988 -69450639 - AluSx SINE Alu -19 293 1 843 211 47 77 chr9 48412082 48412332 -69450295 + L1ME3 LINE L1 5872 6113 -49 2166 110 0 3 chr9 48412332 48412624 -69450003 + AluSc SINE Alu 1 291 -18 843 211 47 77 chr9 48412624 48412672 -69449955 + L1ME3 LINE L1 6113 6161 -1 186 296 190 22 chr9 48412766 48412945 -69449682 + MIR SINE MIR 12 220 -42 2380 109 0 3 chr9 48413582 48413893 -69448734 - AluSx SINE Alu -2 310 1 2960 189 47 50 chr9 48415462 48416208 -69446419 - L1MB7 LINE L1 0 6184 5437 2320 112 0 0 chr9 48416208 48416513 -69446114 - AluSg SINE Alu -5 305 1 2960 189 47 50 chr9 48416513 48416554 -69446073 - L1MB7 LINE L1 -747 5437 5397 213 39 0 0 chr9 48416554 48416580 -69446047 + (TTTTC)n Simple_repeat Simple_repeat 2 27 0 2092 122 0 0 chr9 48416587 48416873 -69445754 - AluSg SINE Alu -24 286 1 2960 189 47 50 chr9 48416873 48417060 -69445567 - L1MB7 LINE L1 -793 5391 5209 208 103 0 51 chr9 48417470 48417509 -69445118 + (TATG)n Simple_repeat Simple_repeat 3 39 0 204 298 0 18 chr9 48418021 48418078 -69444549 - MER5A DNA MER1_type -18 171 116 342 325 8 8 chr9 48418857 48418974 -69443653 + MIR3 SINE MIR 44 160 -48 867 178 72 22 chr9 48418974 48419154 -69443473 + MER5A DNA MER1_type 1 189 0 492 282 10 10 chr9 48419163 48419311 -69443316 - MER5B DNA MER1_type -1 177 41 2113 88 49 11 chr9 48419716 48420000 -69442627 + AluY SINE Alu 1 295 -16 1988 107 18 7 chr9 48420118 48420425 -69442202 - AluSq SINE Alu 0 310 1 987 264 118 53 chr9 48420739 48421580 -69441047 - HAL1 LINE L1 -618 1889 995 239 127 0 55 chr9 48421610 48421665 -69440962 + (TAAAA)n Simple_repeat Simple_repeat 5 56 0 259 312 92 46 chr9 48422097 48422206 -69440421 + MIR SINE MIR 31 144 -64 208 139 0 0 chr9 48422253 48422289 -69440338 + (TTTTTA)n Simple_repeat Simple_repeat 5 40 0 23 33 0 0 chr9 48422289 48422319 -69440308 + AT_rich Low_complexity Low_complexity 1 30 0 2107 119 3 7 chr9 48422319 48422613 -69440014 + AluSq SINE Alu 1 293 -20 188 151 0 19 chr9 48422614 48422667 -69439960 + T-rich Low_complexity Low_complexity 3 54 0 2052 117 4 0 chr9 48422667 48422940 -69439687 - AluSq SINE Alu -39 274 1 2405 106 0 0 chr9 48422943 48423254 -69439373 - AluSq SINE Alu -2 311 1 2376 119 114 8 chr9 48423797 48424184 -69438443 + MSTA LTR MaLR 1 428 0 291 252 9 61 chr9 48424268 48424383 -69438244 + GA-rich Low_complexity Low_complexity 1 109 0 252 0 0 0 chr9 48424421 48424449 -69438178 + (CA)n Simple_repeat Simple_repeat 2 29 0 2080 94 7 0 chr9 48424846 48425122 -69437505 + AluSq SINE Alu 36 313 0 2322 128 67 10 chr9 48425380 48425785 -69436842 - MSTA LTR MaLR 0 428 1 183 122 61 0 chr9 48426174 48426223 -69436404 + (TA)n Simple_repeat Simple_repeat 1 52 0 37 0 0 0 chr9 48426234 48426271 -69436356 + AT_rich Low_complexity Low_complexity 1 37 0 429 238 169 0 chr9 48426370 48426398 -69436229 + MER5A DNA MER1_type 1 23 -166 180 0 0 0 chr9 48426398 48426418 -69436209 + (CAG)n Simple_repeat Simple_repeat 1 20 0 429 238 169 0 chr9 48426418 48426549 -69436078 + MER5A DNA MER1_type 23 187 -2 1795 91 140 0 chr9 48426754 48427019 -69435608 - AluSx SINE Alu 0 302 1 298 299 104 15 chr9 48427311 48427445 -69435182 + L2 LINE L2 3127 3272 0 547 287 13 0 chr9 48427781 48427938 -69434689 - MIR SINE MIR -18 244 86 2154 88 17 10 chr9 48427938 48428235 -69434392 - AluY SINE Alu -12 299 1 681 173 0 0 chr9 48428263 48428367 -69434260 - FLAM_A SINE Alu -26 116 13 439 193 23 0 chr9 48428404 48428492 -69434135 + AluSc SINE Alu 1 90 -219 443 256 30 60 chr9 48429420 48429553 -69433074 + MIR SINE MIR 56 184 -78 23 68 0 0 chr9 48429638 48429682 -69432945 + AT_rich Low_complexity Low_complexity 1 44 0 1957 137 3 32 chr9 48430050 48430364 -69432263 + AluJb SINE Alu 1 305 -7 499 315 46 5 chr9 48431067 48431264 -69431363 + MIR SINE MIR 2 206 -56 501 291 41 23 chr9 48431469 48431641 -69430986 - MER5A DNA MER1_type 0 189 15 279 366 0 0 chr9 48431931 48432032 -69430595 + MER5A DNA MER1_type 84 184 -5 4158 136 56 1 chr9 48432135 48432916 -69429711 + L1M4c LINE L1 674 1497 -4887 985 136 87 5 chr9 48432961 48433167 -69429460 - Tigger7 DNA MER2_type -222 511 289 * 2819 176 40 34 chr9 48433148 48433599 -69429028 + LTR39 LTR ERV1 149 606 -177 1659 127 150 0 chr9 48433599 48433859 -69428768 + AluSx SINE Alu 1 299 -13 2819 176 40 34 chr9 48433859 48434002 -69428625 + LTR39 LTR ERV1 606 747 -36 4227 161 48 24 chr9 48434024 48434124 -69428503 + L1MB3 LINE L1 5173 5269 -914 1943 147 0 3 chr9 48434124 48434416 -69428211 + AluJb SINE Alu 1 291 -21 4227 161 48 24 chr9 48434416 48435050 -69427577 + L1MB3 LINE L1 5269 5926 -257 704 163 7 44 chr9 48435050 48435185 -69427442 + AluJo SINE Alu 2 131 -171 4227 161 48 24 chr9 48435185 48435438 -69427189 + L1MB3 LINE L1 5926 6171 -12 1884 153 45 0 chr9 48436309 48436597 -69426030 - AluJb SINE Alu -11 301 1 24 53 0 0 chr9 48437298 48437336 -69425291 + AT_rich Low_complexity Low_complexity 1 38 0 342 279 30 61 chr9 48438325 48438522 -69424105 + L1ME4a LINE L1 5694 5884 -237 23 54 0 0 chr9 48438606 48438643 -69423984 + AT_rich Low_complexity Low_complexity 1 37 0 355 257 26 40 chr9 48438857 48439009 -69423618 + L1ME1 LINE L1 3660 3809 -2337 2347 199 97 31 chr9 48439024 48439817 -69422810 + L1ME1 LINE L1 4518 5362 -784 933 206 0 12 chr9 48439826 48439996 -69422631 + AluJo SINE Alu 137 304 -8 406 225 122 6 chr9 48440001 48440655 -69421972 + L1ME1 LINE L1 5364 6154 -12 259 222 10 50 chr9 48440731 48440830 -69421797 + L1MC4 LINE L1 7181 7275 -767 413 243 91 86 chr9 48440856 48441365 -69421262 + L1MC5 LINE L1 7223 7689 -272 888 151 0 0 chr9 48442208 48442387 -69420240 + (CCAA)n Simple_repeat Simple_repeat 1 179 0 404 314 186 4 chr9 48442402 48442638 -69419989 - L2 LINE L2 -338 2976 2698 238 250 181 50 chr9 48442640 48442800 -69419827 - MIR SINE MIR -62 200 20 332 203 0 0 chr9 48443007 48443066 -69419561 - MIR SINE MIR -3 259 201 429 20 0 0 chr9 48443066 48443116 -69419511 + (CCAA)n Simple_repeat Simple_repeat 2 51 0 294 323 75 0 chr9 48443145 48443238 -69419389 - L2 LINE L2 -303 2969 2870 * 521 202 42 2 chr9 48443231 48443350 -69419277 - MIR SINE MIR -21 187 50 230 271 48 100 chr9 48443442 48443516 -69419111 - MIR SINE MIR -57 151 91 2130 103 6 26 chr9 48443516 48443828 -69418799 + AluY SINE Alu 1 306 -5 230 271 48 100 chr9 48443828 48443914 -69418713 - MIR SINE MIR -117 91 2 2377 97 3 0 chr9 48443945 48444253 -69418374 + AluSp SINE Alu 1 309 -4 1981 118 61 10 chr9 48444828 48445124 -69417503 - AluSq SINE Alu -2 311 1 1335 79 101 0 chr9 48445564 48445742 -69416885 + AluY SINE Alu 110 305 -6 2138 135 0 0 chr9 48446049 48446345 -69416282 - AluSx SINE Alu -16 296 1 1922 109 50 53 chr9 48446356 48446658 -69415969 - AluSx SINE Alu -11 301 1 1333 329 73 61 chr9 48446689 48447033 -69415594 + HERV16 LTR ERVL 361 699 -4297 1662 168 10 39 chr9 48447033 48447364 -69415263 + AluJo SINE Alu 6 312 0 1333 329 73 61 chr9 48447364 48448363 -69414264 + HERV16 LTR ERVL 699 1789 -3207 2701 49 0 0 chr9 48448363 48448669 -69413958 + AluY SINE Alu 1 306 -5 1333 329 73 61 chr9 48448669 48448757 -69413870 + HERV16 LTR ERVL 1789 1874 -3122 1194 344 34 9 chr9 48448837 48450261 -69412366 + HERV16 LTR ERVL 2386 3912 -1742 1174 201 76 0 chr9 48450268 48450492 -69412135 + MLT1A1 LTR MaLR 1 241 -124 1952 139 10 26 chr9 48450525 48450828 -69411799 - AluSx SINE Alu -14 298 1 1214 85 7 0 chr9 48451151 48451304 -69411323 - AluJo SINE Alu -137 175 22 658 280 31 40 chr9 48451860 48452154 -69410473 + MLT1G LTR MaLR 1 275 -320 3229 122 56 21 chr9 48452179 48452330 -69410297 + MER39B LTR ERV1 1 145 -508 2129 137 9 29 chr9 48452330 48452674 -69409953 - MER1B DNA MER1_type 0 337 1 3229 122 56 21 chr9 48452674 48453039 -69409588 + MER39B LTR ERV1 145 535 -118 1186 208 43 49 chr9 48453074 48453249 -69409378 - Charlie4a DNA MER1_type -1589 372 198 2452 75 0 10 chr9 48453249 48453557 -69409070 + AluY SINE Alu 1 305 -6 1186 208 43 49 chr9 48453557 48453751 -69408876 - Charlie4a DNA MER1_type -1763 198 5 2432 83 0 3 chr9 48454436 48454738 -69407889 - AluY SINE Alu -10 301 1 226 361 28 23 chr9 48454933 48455061 -69407566 - MIR SINE MIR -67 141 15 621 279 56 28 chr9 48455538 48455789 -69406838 + L2 LINE L2 2094 2351 -963 383 243 243 12 chr9 48455840 48456095 -69406532 + L2 LINE L2 2988 3301 -12 272 330 119 6 chr9 48456108 48456284 -69406343 + L2 LINE L2 2567 2762 -552 2136 155 38 40 chr9 48456457 48456856 -69405771 - MLT2D LTR ERVL 0 414 17 2272 106 3 0 chr9 48456967 48457260 -69405367 - AluSq SINE Alu -9 304 11 333 263 12 0 chr9 48457439 48457519 -69405108 + L2 LINE L2 3231 3311 -2 2252 90 13 0 chr9 48457624 48457924 -69404703 - AluSx SINE Alu -8 304 1 2349 101 0 13 chr9 48458282 48458590 -69404037 - AluSg SINE Alu -6 304 1 4222 143 14 48 chr9 48459081 48459665 -69402962 + MER50 LTR ERV1 3 558 -176 1971 152 13 0 chr9 48459665 48459967 -69402660 - AluSx SINE Alu -6 306 1 4222 143 14 48 chr9 48459967 48460116 -69402511 + MER50 LTR ERV1 558 711 -23 2318 110 0 0 chr9 48460192 48460491 -69402136 - AluSq SINE Alu -14 299 1 1771 176 181 21 chr9 48461339 48461764 -69400863 - MLT1D LTR MaLR -8 497 5 2336 175 52 7 chr9 48461907 48462348 -69400279 + LOR1b LTR ERV1 1 461 0 207 286 199 12 chr9 48462451 48462612 -69400015 - MIR3 SINE MIR -8 200 10 2343 81 13 0 chr9 48462729 48463027 -69399600 + AluY SINE Alu 1 302 -9 1683 166 32 7 chr9 48463031 48463332 -69399295 + AluJb SINE Alu 1 308 0 209 0 97 0 chr9 48463712 48463743 -69398884 + (TTAAA)n Simple_repeat Simple_repeat 1 34 0 270 221 87 58 chr9 48465145 48465249 -69397378 - L1ME4a LINE L1 0 6121 6015 918 167 17 99 chr9 48465335 48465568 -69397059 + MER20 DNA MER1_type 5 218 -1 875 295 78 50 chr9 48466095 48466267 -69396360 - L1MC4a LINE L1 -250 5912 5746 2306 103 3 0 chr9 48466267 48466568 -69396059 - AluSp SINE Alu -11 302 1 875 295 78 50 chr9 48466568 48467037 -69395590 - L1MC4a LINE L1 -416 5746 5258 1695 155 6 62 chr9 48467185 48467507 -69395120 - AluJb SINE Alu -8 304 1 803 117 19 7 chr9 48467539 48467693 -69394934 + CT-rich Low_complexity Low_complexity 1 156 0 504 0 0 0 chr9 48467803 48467859 -69394768 + (TTCC)n Simple_repeat Simple_repeat 3 58 0 765 216 13 20 chr9 48467859 48468012 -69394615 - AluJb SINE Alu -27 285 134 235 259 121 0 chr9 48468090 48468148 -69394479 + MER45 DNA AcHobo 2 66 -887 496 322 40 22 chr9 48468195 48468422 -69394205 + MIR SINE MIR 1 231 -31 23 0 0 0 chr9 48468455 48468478 -69394149 + AT_rich Low_complexity Low_complexity 1 23 0 230 85 68 0 chr9 48468717 48468776 -69393851 + (TA)n Simple_repeat Simple_repeat 2 64 0 235 259 121 0 chr9 48468800 48468858 -69393769 + MER45 DNA AcHobo 2 66 -887 501 316 40 22 chr9 48468907 48469132 -69393495 + MIR SINE MIR 3 231 -31 23 0 0 0 chr9 48469165 48469188 -69393439 + AT_rich Low_complexity Low_complexity 1 23 0 1449 159 98 29 chr9 48469331 48469607 -69393020 - AluSq SINE Alu -16 297 3 2262 90 10 3 chr9 48469654 48469944 -69392683 - AluSq SINE Alu -21 292 1 234 301 49 41 chr9 48470369 48470492 -69392135 - MER5A DNA MER1_type -3 186 63 2018 132 7 3 chr9 48470583 48470879 -69391748 - AluSq SINE Alu -16 297 1 2356 88 3 7 chr9 48471301 48471597 -69391030 - AluSp SINE Alu -18 295 1 2053 116 0 0 chr9 48471957 48472232 -69390395 + AluSx SINE Alu 1 275 -37 180 0 0 0 chr9 48472233 48472253 -69390374 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 2260 99 0 0 chr9 48472460 48472763 -69389864 - AluSc SINE Alu 0 303 1 404 300 77 42 chr9 48473621 48473931 -69388696 - L1MC4a LINE L1 -1866 5942 5622 2401 80 6 6 chr9 48473989 48474300 -69388327 + AluSq SINE Alu 1 311 -2 198 0 0 0 chr9 48474518 48474540 -69388087 + (TG)n Simple_repeat Simple_repeat 2 23 0 871 86 9 0 chr9 48474675 48474791 -69387836 - AluSp/q SINE Alu -11 302 186 268 224 7 163 chr9 48474904 48474985 -69387642 - L1ME LINE L1 -451 5670 5619 2288 82 7 0 chr9 48474985 48475286 -69387341 + AluSp SINE Alu 1 303 0 268 224 7 163 chr9 48475286 48475350 -69387277 - L1ME LINE L1 -502 5619 5547 856 254 32 16 chr9 48475831 48476083 -69386544 + L1ME3 LINE L1 5896 6151 -11 234 274 69 29 chr9 48476151 48476253 -69386374 - L2 LINE L2 -545 2769 2664 2210 101 32 16 chr9 48476268 48476576 -69386051 - AluSq SINE Alu 0 313 1 354 284 112 0 chr9 48476834 48476950 -69385677 + L2 LINE L2 3141 3269 -3 222 279 59 0 chr9 48477388 48477456 -69385171 + MIR3 SINE MIR 86 157 -51 262 247 101 22 chr9 48478148 48478237 -69384390 - MER103 DNA DNA -63 103 8 2211 123 0 0 chr9 48478276 48478578 -69384049 - AluSx SINE Alu -10 302 1 226 326 82 0 chr9 48478745 48478843 -69383784 - MIR SINE MIR -97 165 60 2645 48 3 0 chr9 48478902 48479212 -69383415 + AluY SINE Alu 1 311 0 1013 220 136 79 chr9 48479420 48479769 -69382858 + L1MDa LINE L1 1776 2173 -4367 2268 67 3 3 chr9 48479769 48480079 -69382548 + AluY SINE Alu 1 310 0 1013 220 136 79 chr9 48480079 48480300 -69382327 + L1MDa LINE L1 2173 2380 -4160 753 239 9 68 chr9 48480529 48480751 -69381876 + L1ME3 LINE L1 5932 6140 -22 739 95 0 142 chr9 48481703 48481851 -69380776 - FLAM_A SINE Alu -6 136 10 5042 110 16 39 chr9 48481851 48482622 -69380005 - MER49 LTR ERV1 0 923 171 557 269 34 7 chr9 48482621 48482770 -69379857 + LTR33 LTR ERVL 355 507 -14 * 2475 92 0 0 chr9 48482770 48483075 -69379552 - AluSc SINE Alu -4 305 1 207 0 0 0 chr9 48483075 48483098 -69379529 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 2073 129 0 0 chr9 48483100 48483378 -69379249 - AluSg SINE Alu -32 278 1 506 245 157 0 chr9 48484487 48484634 -69377993 + MER5A DNA MER1_type 14 183 -6 750 213 40 0 chr9 48484677 48484851 -69377776 + MER5A DNA MER1_type 1 181 -8 389 345 68 29 chr9 48484990 48485271 -69377356 + HERVL LTR ERVL 1378 1669 -4095 3710 314 58 26 chr9 48485467 48486982 -69375645 + HERVL LTR ERVL 1889 3477 -2177 3216 89 7 2 chr9 48486982 48487411 -69375216 + MER57B LTR ERV1 1 431 -3 3710 314 58 26 chr9 48487411 48487903 -69374724 + HERVL LTR ERVL 3477 3952 -1702 2999 313 56 20 chr9 48487910 48488386 -69374241 + HERVL LTR ERVL 4078 4535 -1229 2416 48 24 3 chr9 48488386 48488681 -69373946 + AluY SINE Alu 1 301 -10 2999 313 56 20 chr9 48488681 48488819 -69373808 + HERVL LTR ERVL 4535 4667 -1097 2316 102 3 3 chr9 48488819 48489124 -69373503 - AluSx SINE Alu -7 305 1 2999 313 56 20 chr9 48489124 48489716 -69372911 + HERVL LTR ERVL 4667 5329 -435 773 115 0 0 chr9 48489719 48489823 -69372804 + AluJb SINE Alu 3 106 -206 1401 169 17 13 chr9 48489823 48490060 -69372567 + AluJb SINE Alu 63 300 -12 336 274 123 56 chr9 48490452 48490631 -69371996 + LTR33 LTR ERVL 307 497 -24 2478 64 0 7 chr9 48490689 48490984 -69371643 - AluY SINE Alu -17 294 2 1701 130 80 37 chr9 48491015 48491314 -69371313 + AluJb SINE Alu 1 312 0 2076 141 0 0 chr9 48491319 48491609 -69371018 + AluSx SINE Alu 5 294 -18 652 193 89 0 chr9 48491952 48492087 -69370540 + L1ME1 LINE L1 5457 5603 -563 1440 62 11 0 chr9 48492089 48492265 -69370362 + AluY SINE Alu 131 308 -3 1688 205 34 81 chr9 48492265 48492491 -69370136 + L1ME1 LINE L1 5595 5830 -336 1946 155 3 0 chr9 48492491 48492787 -69369840 - AluSx SINE Alu -15 297 1 1688 205 34 81 chr9 48492787 48493067 -69369560 + L1ME1 LINE L1 5830 6077 -89 12445 117 26 19 chr9 48493068 48494989 -69367638 - L1P LINE L1 -4202 1944 11 316 156 16 0 chr9 48494997 48495061 -69367566 + L1MA10 LINE L1 6264 6328 -6 293 0 0 26 chr9 48495061 48495099 -69367528 + (TTTTA)n Simple_repeat Simple_repeat 3 39 0 2080 125 3 0 chr9 48495104 48495393 -69367234 - AluSx SINE Alu -22 290 1 21 0 0 0 chr9 48495394 48495415 -69367212 + AT_rich Low_complexity Low_complexity 1 21 0 1648 145 41 30 chr9 48495657 48495926 -69366701 - MER1B DNA MER1_type -64 275 4 228 246 24 95 chr9 48495930 48496056 -69366571 - MIR SINE MIR -66 196 80 381 131 0 0 chr9 48496117 48496178 -69366449 + (TG)n Simple_repeat Simple_repeat 2 62 0 738 173 56 56 chr9 48496475 48496672 -69365955 - ORSL DNA AcHobo 0 275 79 1710 91 0 9 chr9 48496675 48496895 -69365732 + AluSq SINE Alu 1 218 -95 4282 196 87 20 chr9 48496930 48497324 -69365303 + L1MD2 LINE L1 5345 5711 -648 1499 179 7 43 chr9 48497324 48497625 -69365002 - AluJo SINE Alu -22 290 1 4282 196 87 20 chr9 48497625 48498171 -69364456 + L1MD2 LINE L1 5711 6348 -11 2224 109 0 3 chr9 48498175 48498469 -69364158 + AluSg SINE Alu 1 293 -17 1074 257 84 63 chr9 48498601 48498881 -69363746 - LTR33 LTR ERVL 0 521 223 2033 128 0 0 chr9 48498881 48499198 -69363429 + AluSx SINE Alu 9 325 0 1074 257 84 63 chr9 48499198 48499426 -69363201 - LTR33 LTR ERVL -298 223 1 1769 173 0 4 chr9 48499492 48499770 -69362857 + AluJb SINE Alu 1 277 -35 1277 258 52 31 chr9 48499786 48500231 -69362396 - L1MC/D LINE L1 -2071 5737 5284 2737 158 41 42 chr9 48500231 48500442 -69362185 + MER4B LTR ERV1 1 211 -568 1886 167 20 0 chr9 48500442 48500747 -69361880 + AluJb SINE Alu 1 311 -1 2737 158 41 42 chr9 48500747 48501150 -69361477 + MER4B LTR ERV1 211 779 0 356 262 121 49 chr9 48501442 48501747 -69360880 - L1MC/D LINE L1 -1084 5062 4736 2204 105 3 3 chr9 48501782 48502078 -69360549 - AluSx SINE Alu -16 296 1 480 333 82 12 chr9 48502608 48503170 -69359457 - L1MC/D LINE L1 -1559 4587 3987 288 280 9 0 chr9 48503165 48503272 -69359355 - L1MC/D LINE L1 -3493 2653 2546 * 1204 220 122 35 chr9 48503277 48503645 -69358982 + L1ME3A LINE L1 5080 5414 -750 2055 141 10 0 chr9 48503645 48503944 -69358683 + AluSq SINE Alu 1 302 -11 1204 220 122 35 chr9 48503944 48504231 -69358396 + L1ME3A LINE L1 5414 5788 -376 2801 92 21 38 chr9 48504231 48504531 -69358096 - MER4A LTR ERV1 0 664 372 4516 148 23 18 chr9 48504531 48505312 -69357315 - LTR1 LTR ERV1 0 785 1 2801 92 21 38 chr9 48505312 48505437 -69357190 - MER4A LTR ERV1 -292 372 246 1268 60 12 0 chr9 48505439 48505606 -69357021 - MER4A LTR ERV1 -491 173 5 958 229 99 42 chr9 48505609 48505793 -69356834 + L1ME3A LINE L1 5785 5957 -213 2344 106 0 0 chr9 48505793 48506095 -69356532 + AluSx SINE Alu 1 302 -10 958 229 99 42 chr9 48506095 48506263 -69356364 + L1ME3A LINE L1 5957 6157 -13 2179 105 28 0 chr9 48506526 48506811 -69355816 - AluSx SINE Alu -19 293 1 197 269 39 0 chr9 48507639 48507691 -69354936 - MER5A DNA MER1_type 0 189 136 283 98 0 98 chr9 48507828 48507879 -69354748 + MER75 DNA T2_type 459 504 0 578 353 114 9 chr9 48507893 48508393 -69354234 + L2 LINE L2 2748 3296 -17 1960 87 87 4 chr9 48508718 48508982 -69353645 + AluSc SINE Alu 1 286 -23 598 116 0 12 chr9 48509037 48509123 -69353504 + AluS SINE Alu 2 86 -226 265 155 0 17 chr9 48509123 48509181 -69353446 + MER5B DNA MER1_type 106 162 -16 1941 161 108 16 chr9 48509226 48509654 -69352973 - MLT1C LTR MaLR 0 467 1 261 0 0 0 chr9 48509893 48509922 -69352705 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 238 230 0 81 chr9 48509945 48510019 -69352608 - Charlie8 DNA MER1_type -2325 92 25 1386 95 6 0 chr9 48510306 48510485 -69352142 - MER4B LTR ERV1 0 610 431 564 130 10 20 chr9 48510507 48510607 -69352020 - MER4A LTR ERV1 -565 99 1 2460 93 0 0 chr9 48510774 48511076 -69351551 + AluSx SINE Alu 1 302 -10 289 306 32 54 chr9 48511302 48511488 -69351139 - L1MC4 LINE L1 -363 7679 7498 2594 50 0 0 chr9 48611723 48612022 -69250605 + AluY SINE Alu 5 303 -8 1855 169 9 0 chr9 48612816 48613141 -69249486 + L1MB3 LINE L1 5814 6141 -42 1421 136 75 75 chr9 48613141 48613436 -69249191 + AluSx SINE Alu 1 295 -17 2114 113 7 0 chr9 48613455 48613739 -69248888 + AluSq SINE Alu 1 286 -27 2491 65 3 10 chr9 48613858 48614168 -69248459 + AluY SINE Alu 1 308 -3 2068 121 0 32 chr9 48614245 48614559 -69248068 + AluSx SINE Alu 1 304 -8 1216 247 54 52 chr9 48614579 48615114 -69247513 + L1M4 LINE L1 2300 2835 -3311 1466 175 53 30 chr9 48615115 48615537 -69247090 + AluJo SINE Alu 1 429 0 2329 103 0 3 chr9 48615573 48615884 -69246743 + AluSq SINE Alu 1 310 -3 442 224 20 0 chr9 48615991 48616089 -69246538 + L1MC4 LINE L1 6762 6861 -1181 185 270 0 0 chr9 48616319 48616356 -69246271 + MER5A DNA MER1_type 55 91 -98 2426 90 0 0 chr9 48616404 48616703 -69245924 - AluSx SINE Alu -13 299 1 2525 48 0 3 chr9 48616713 48617006 -69245621 - AluY SINE Alu -19 292 1 2001 154 7 7 chr9 48617051 48617356 -69245271 - AluJb SINE Alu -7 305 1 1046 168 0 0 chr9 48617370 48617531 -69245096 + AluJb SINE Alu 143 303 -9 851 146 5 111 chr9 48617733 48617932 -69244695 + FAM SINE Alu 1 47 -2 1125 46 23 0 chr9 48617994 48618124 -69244503 + AluSp SINE Alu 1 133 -180 1724 20 0 5 chr9 48618231 48618429 -69244198 - L1PA4 LINE L1 -32 6123 5927 235 294 193 0 chr9 48618436 48618555 -69244072 - MIR SINE MIR -93 169 28 480 35 0 0 chr9 48618927 48618985 -69243642 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 2224 117 0 0 chr9 48619175 48619473 -69243154 + AluSx SINE Alu 1 298 -14 394 215 31 32 chr9 48619936 48620098 -69242529 + MIR SINE MIR 6 160 -62 2274 119 3 3 chr9 48620496 48620808 -69241819 + AluSx SINE Alu 1 312 0 2258 106 0 0 chr9 48621185 48621478 -69241149 + AluSg SINE Alu 11 303 -7 335 303 10 0 chr9 48621504 48621603 -69241024 - L2 LINE L2 -673 2641 2542 1963 247 55 27 chr9 48621603 48622234 -69240393 + L1MD2 LINE L1 4658 5306 -840 2189 122 10 0 chr9 48622241 48622544 -69240083 + AluSx SINE Alu 5 310 -2 402 114 38 0 chr9 48622547 48622626 -69240001 + GA-rich Low_complexity Low_complexity 3 84 0 2790 240 17 42 chr9 48622637 48622670 -69239957 + L1MD2 LINE L1 5339 5371 -988 1843 169 49 30 chr9 48622670 48623038 -69239589 - THE1C LTR MaLR 0 375 1 2790 240 17 42 chr9 48623038 48623429 -69239198 + L1MD2 LINE L1 5371 5736 -623 2129 127 3 10 chr9 48623429 48623736 -69238891 - AluSp SINE Alu -8 305 1 2790 240 17 42 chr9 48623736 48624092 -69238535 + L1MD2 LINE L1 5736 6100 -259 2006 149 91 49 chr9 48624095 48624232 -69238395 - LTR24C LTR ERV1 0 635 505 2318 90 0 0 chr9 48624232 48624521 -69238106 + AluSg SINE Alu 1 289 -21 189 0 0 0 chr9 48624525 48624546 -69238081 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 2006 149 91 49 chr9 48624546 48624854 -69237773 - LTR24C LTR ERV1 -132 503 166 1926 93 0 19 chr9 48624957 48625225 -69237402 + AluSx SINE Alu 50 312 0 698 305 83 65 chr9 48625228 48625277 -69237350 + L1 LINE L1 2865 2912 -3234 2313 91 3 0 chr9 48625277 48625585 -69237042 + AluSc SINE Alu 1 309 0 698 305 83 65 chr9 48625585 48625921 -69236706 + L1 LINE L1 2912 3240 -2906 1669 188 7 7 chr9 48625921 48626229 -69236398 + AluJb SINE Alu 5 312 0 698 305 83 65 chr9 48626229 48626538 -69236089 + L1 LINE L1 3240 3573 -2573 2301 95 0 13 chr9 48626567 48626871 -69235756 + AluSq SINE Alu 1 300 -13 231 234 24 81 chr9 48627041 48627165 -69235462 + L1 LINE L1 3647 3763 -2383 1155 141 0 6 chr9 48627265 48627435 -69235192 + AluSg/x SINE Alu 134 302 -10 467 244 17 64 chr9 48627435 48627607 -69235020 + L1MC4 LINE L1 7566 7729 -313 313 258 65 0 chr9 48627636 48627729 -69234898 + L1MC4 LINE L1 7914 8012 -30 234 156 0 0 chr9 48628270 48628315 -69234312 + GA-rich Low_complexity Low_complexity 2 46 0 1268 126 0 0 chr9 48628383 48628558 -69234069 - AluSc SINE Alu -3 306 132 2519 77 0 0 chr9 48628558 48628858 -69233769 - AluY SINE Alu -11 300 1 8073 142 12 10 chr9 48628868 48629123 -69233504 - L1 LINE L1 -768 5378 5125 2270 112 0 7 chr9 48629123 48629427 -69233200 - AluSx SINE Alu -10 302 1 8073 142 12 10 chr9 48629427 48630535 -69232092 - L1 LINE L1 -1021 5125 4013 2238 113 3 0 chr9 48630555 48630857 -69231770 - AluSx SINE Alu -9 303 1 1906 139 17 3 chr9 48630990 48631277 -69231350 + AluJb SINE Alu 12 302 -10 818 171 0 0 chr9 48631330 48631453 -69231174 + AluJb SINE Alu 4 126 -186 21 0 0 0 chr9 48631453 48631474 -69231153 + AT_rich Low_complexity Low_complexity 1 21 0 2443 97 0 0 chr9 48631474 48631783 -69230844 + AluSc SINE Alu 1 309 0 2189 123 0 0 chr9 48631790 48632116 -69230511 + AluSx SINE Alu 1 326 0 2302 111 0 0 chr9 48632190 48632487 -69230140 + AluSq SINE Alu 1 297 -16 2259 106 0 7 chr9 48632489 48632815 -69229812 + AluSg SINE Alu 1 310 0 2237 85 39 0 chr9 48633109 48633390 -69229237 + AluSq SINE Alu 6 297 -16 2308 105 10 0 chr9 48634206 48634510 -69228117 + AluSg SINE Alu 1 307 -3 301 289 0 67 chr9 48634569 48634644 -69227983 - MIR3 SINE MIR -1 207 143 1863 168 64 9 chr9 48634644 48634990 -69227637 + MLT1A1 LTR MaLR 1 365 0 301 289 0 67 chr9 48634990 48635049 -69227578 - MIR3 SINE MIR -65 143 82 33 0 0 0 chr9 48636158 48636191 -69226436 + AT_rich Low_complexity Low_complexity 1 33 0 814 145 8 0 chr9 48636438 48636569 -69226058 + FLAM_C SINE Alu 2 133 0 295 216 10 49 chr9 48636612 48636714 -69225913 + L1MC5 LINE L1 7832 7929 -32 846 154 16 0 chr9 48637350 48637614 -69225013 + CT-rich Low_complexity Low_complexity 1 268 0 984 117 6 22 chr9 48637738 48637917 -69224710 + (GAAA)n Simple_repeat Simple_repeat 3 178 0 204 125 0 0 chr9 48637917 48637949 -69224678 + (GGGA)n Simple_repeat Simple_repeat 1 32 0 1294 189 25 56 chr9 48638008 48638330 -69224297 - MLT1D LTR MaLR -193 312 1 2242 104 0 7 chr9 48638345 48638654 -69223973 - AluSx SINE Alu -5 307 1 278 246 246 0 chr9 48638654 48638768 -69223859 + MIR SINE MIR 121 262 0 213 39 0 0 chr9 48640157 48640183 -69222444 + (CA)n Simple_repeat Simple_repeat 2 27 0 727 186 0 76 chr9 48640739 48640884 -69221743 + FLAM_A SINE Alu 1 134 -8 229 291 101 0 chr9 48641650 48641678 -69220949 + MER117 DNA MER1_type 1 25 -172 2031 162 15 25 chr9 48641678 48642072 -69220555 + MLT1B LTR MaLR 1 390 0 229 291 101 0 chr9 48642072 48642122 -69220505 + MER117 DNA MER1_type 25 87 -110 1286 201 0 111 chr9 48642323 48642656 -69219971 + AluJo SINE Alu 1 296 -6 2190 105 0 7 chr9 48642872 48643176 -69219451 - AluY SINE Alu -7 304 3 2118 119 4 0 chr9 48643548 48643850 -69218777 - AluSp SINE Alu 0 307 5 952 155 40 35 chr9 48643881 48644055 -69218572 - FAM SINE Alu 0 175 1 2273 93 0 3 chr9 48644132 48644421 -69218206 + AluSg SINE Alu 1 288 -22 23 33 0 0 chr9 48644421 48644451 -69218176 + AT_rich Low_complexity Low_complexity 1 30 0 641 260 75 9 chr9 48644613 48645051 -69217576 - L1ME4a LINE L1 -2 6119 5623 927 226 83 4 chr9 48645267 48645497 -69217130 - MIR SINE MIR 0 262 15 2712 32 0 25 chr9 48645637 48645952 -69216675 - AluY SINE Alu -4 307 1 2190 82 7 43 chr9 48645952 48646257 -69216370 - AluSp SINE Alu -19 294 1 571 240 86 11 chr9 48647342 48647517 -69215110 - MIR SINE MIR 0 262 75 1571 171 24 58 chr9 48647521 48647813 -69214814 + AluJb SINE Alu 1 282 -30 1693 105 0 14 chr9 48647814 48648033 -69214594 + AluSq SINE Alu 3 218 -95 238 225 0 0 chr9 48648033 48648073 -69214554 + LTR30 LTR ERV1 13 52 -670 995 103 0 146 chr9 48648073 48648286 -69214341 + LTR12 LTR ERV1 53 234 -480 290 148 0 0 chr9 48648347 48648401 -69214226 + LTR12 LTR ERV1 232 285 -429 293 175 48 87 chr9 48648402 48648505 -69214122 + LTR30 LTR ERV1 379 642 -80 590 192 0 0 chr9 48648540 48648639 -69213988 + LTR12 LTR ERV1 616 714 0 712 90 0 10 chr9 48648639 48648739 -69213888 + AluSg/x SINE Alu 204 302 -8 2338 95 3 0 chr9 48648774 48649070 -69213557 + AluSp SINE Alu 5 301 -12 802 185 79 11 chr9 48649401 48649590 -69213037 - L1ME3A LINE L1 -2 6168 5967 2071 136 7 3 chr9 48649772 48650073 -69212554 - AluSx SINE Alu -10 302 1 2195 114 0 0 chr9 48650793 48651139 -69211488 - AluSc SINE Alu 0 346 1 2022 127 0 18 chr9 48651157 48651303 -69211324 - AluJb SINE Alu -33 279 139 2293 98 7 0 chr9 48651303 48651598 -69211029 - AluSg SINE Alu -13 297 1 2022 127 0 18 chr9 48651598 48651735 -69210892 - AluJb SINE Alu -173 139 1 805 206 0 0 chr9 48651735 48651871 -69210756 - AluJo SINE Alu -176 136 1 21 0 0 0 chr9 48653159 48653180 -69209447 + AT_rich Low_complexity Low_complexity 1 21 0 1223 187 0 22 chr9 48653200 48653430 -69209197 + AluJo SINE Alu 1 225 -87 22 56 0 0 chr9 48653450 48653486 -69209141 + AT_rich Low_complexity Low_complexity 1 36 0 2269 94 13 0 chr9 48653704 48654002 -69208625 + AluSg1 SINE Alu 1 302 -7 2097 125 0 0 chr9 48654485 48654766 -69207861 + AluSg SINE Alu 1 281 -29 333 0 0 0 chr9 48654766 48654803 -69207824 + (CA)n Simple_repeat Simple_repeat 2 38 0 1291 123 8 102 chr9 48655161 48655405 -69207222 + AluSg/x SINE Alu 74 294 -16 1762 160 0 37 chr9 48655410 48655710 -69206917 + AluSx SINE Alu 1 289 -23 244 227 30 15 chr9 48656700 48656766 -69205861 - MIR3 SINE MIR -49 159 93 227 250 0 38 chr9 48656961 48657041 -69205586 - MER96B DNA MER1_type? -238 179 103 2200 118 3 3 chr9 48657818 48658123 -69204504 + AluSx SINE Alu 1 305 -7 2037 102 10 30 chr9 48658514 48658818 -69203809 + AluSq SINE Alu 1 298 -15 21 0 0 0 chr9 48660693 48660714 -69201913 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr9 48662244 48662270 -69200357 + AT_rich Low_complexity Low_complexity 1 26 0 2093 135 3 0 chr9 48662416 48662712 -69199915 + AluSx SINE Alu 1 297 -15 806 147 0 23 chr9 48662761 48662890 -69199737 + FLAM_C SINE Alu 1 126 -7 2450 90 0 0 chr9 48662894 48663195 -69199432 + AluSg SINE Alu 1 301 -9 835 117 0 0 chr9 48663852 48663990 -69198637 - AluSp/q SINE Alu 0 311 174 2379 95 0 3 chr9 48664520 48664824 -69197803 + AluSx SINE Alu 1 303 -9 271 261 11 23 chr9 48665066 48665154 -69197473 - MIR SINE MIR -34 228 142 946 112 8 22 chr9 48666403 48666537 -69196090 + FLAM_C SINE Alu 2 133 -10 2378 90 0 0 chr9 48667229 48667529 -69195098 - AluSc SINE Alu -9 300 1 1964 121 7 7 chr9 48668485 48668766 -69193861 + AluSx SINE Alu 1 281 -31 2470 89 0 0 chr9 48668814 48669116 -69193511 + AluY SINE Alu 1 302 -9 1191 186 64 51 chr9 48669738 48670034 -69192593 - AluJo SINE Alu -1 301 2 697 183 0 8 chr9 48670065 48670185 -69192442 + AluSq/x SINE Alu 2 120 -192 2148 97 14 0 chr9 48670358 48670660 -69191967 - AluSp SINE Alu 0 306 1 1028 236 113 89 chr9 48671284 48671774 -69190853 - MLT1G1 LTR MaLR -15 580 74 2140 112 0 7 chr9 48671774 48672069 -69190558 - AluY SINE Alu -18 293 1 1028 236 113 89 chr9 48672069 48672138 -69190489 - MLT1G1 LTR MaLR -521 74 8 962 171 0 67 chr9 48672181 48672374 -69190253 + FRAM SINE Alu 1 175 -1 2196 109 3 3 chr9 48672735 48673046 -69189581 + AluY SINE Alu 1 311 0 2097 168 35 47 chr9 48673078 48673287 -69189340 - MSTA LTR MaLR -27 401 198 2377 83 0 0 chr9 48673287 48673588 -69189039 - AluY SINE Alu -10 301 1 2097 168 35 47 chr9 48673588 48673784 -69188843 - MSTA LTR MaLR -230 198 1 703 236 38 0 chr9 48674574 48674731 -69187896 + MER63A DNA MER1_type 48 210 0 437 275 93 47 chr9 48675084 48675320 -69187307 - MLT1H LTR MaLR -4 545 292 367 238 0 12 chr9 48675490 48675574 -69187053 - MLT1F LTR MaLR -459 83 1 * 433 222 0 20 chr9 48675574 48675669 -69186958 + MLT1I LTR MaLR 313 405 -4 258 217 289 66 chr9 48675684 48675836 -69186791 - MLT1J2 LTR MaLR 0 450 265 283 183 24 0 chr9 48676100 48676182 -69186445 + GA-rich Low_complexity Low_complexity 2 85 0 1289 315 27 7 chr9 48676416 48676860 -69185767 + L3 LINE CR1 2 454 -1123 2580 56 0 0 chr9 48677025 48677370 -69185257 - AluY SINE Alu 0 345 1 1392 313 40 0 chr9 48677446 48678015 -69184612 + HAL1 LINE L1 1165 1756 -751 290 250 0 25 chr9 48678400 48678480 -69184147 + HAL1 LINE L1 2075 2152 -355 331 156 27 1 chr9 48678491 48678578 -69184049 - L1MA9 LINE L1 -74 6094 6008 24 0 0 0 chr9 48679963 48679987 -69182640 + AT_rich Low_complexity Low_complexity 1 24 0 2175 116 0 13 chr9 48680546 48680847 -69181780 - AluSx SINE Alu -13 299 3 1763 119 102 7 chr9 48681315 48681600 -69181027 - AluSx SINE Alu 0 312 1 1166 196 33 26 chr9 48681618 48681889 -69180738 - AluJo SINE Alu -39 273 1 315 0 0 0 chr9 48681919 48681954 -69180673 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2235 93 4 0 chr9 48681956 48682236 -69180391 - AluSg SINE Alu -29 281 1 739 210 74 0 chr9 48683787 48683963 -69178664 + MER5A DNA MER1_type 1 189 0 766 135 0 57 chr9 48684010 48684151 -69178476 - FLAM_C SINE Alu 0 133 1 761 104 72 24 chr9 48684464 48684589 -69178038 - FLAM_C SINE Alu -1 132 2 2494 53 7 13 chr9 48684807 48685108 -69177519 + AluY SINE Alu 1 299 -12 218 284 54 14 chr9 48685375 48685449 -69177178 + MIR SINE MIR 70 146 -62 1998 154 7 0 chr9 48685590 48685889 -69176738 + AluSx SINE Alu 1 301 -11 2123 111 3 13 chr9 48686025 48686323 -69176304 - AluSq SINE Alu -18 295 1 315 0 0 0 chr9 48686329 48686364 -69176263 + (CA)n Simple_repeat Simple_repeat 2 36 0 506 281 62 26 chr9 48686606 48686867 -69175760 - L1MC/D LINE L1 -393 5728 5471 312 133 0 0 chr9 48687504 48687564 -69175063 + (TA)n Simple_repeat Simple_repeat 2 61 0 2032 105 51 0 chr9 48687571 48687744 -69174883 - AluSc SINE Alu 0 309 113 369 0 0 0 chr9 48687744 48687785 -69174842 + (TG)n Simple_repeat Simple_repeat 2 42 0 2032 105 51 0 chr9 48687785 48687905 -69174722 - AluSc SINE Alu -196 113 1 693 196 73 24 chr9 48688024 48688238 -69174389 - MLT1B LTR MaLR -160 214 3 180 234 0 0 chr9 48688258 48688305 -69174322 + (TAGG)n Simple_repeat Simple_repeat 1 47 0 1821 134 39 11 chr9 48688665 48688948 -69173679 + AluJb SINE Alu 3 293 -19 1507 112 86 0 chr9 48688965 48689233 -69173394 + L1MA4 LINE L1 6003 6293 -7 1824 147 7 20 chr9 48689333 48689626 -69173001 + AluJo SINE Alu 20 308 -4 288 0 0 0 chr9 48689631 48689663 -69172964 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 935 99 8 0 chr9 48689663 48689845 -69172782 + AluY SINE Alu 173 355 0 535 281 13 7 chr9 48690487 48690640 -69171987 + MIR SINE MIR 53 206 -56 914 223 49 93 chr9 48690712 48691057 -69171570 - MER102b DNA MER1_type -1 340 11 204 262 36 60 chr9 48691058 48691120 -69171507 - L2 LINE L2 -30 3283 3222 1675 266 37 2 chr9 48691120 48691553 -69171074 + LTR16A LTR ERVL 3 450 0 204 262 36 60 chr9 48691553 48691574 -69171053 - L2 LINE L2 -91 3222 3202 638 146 0 133 chr9 48691770 48691921 -69170706 + FLAM_C SINE Alu 3 133 0 282 175 38 0 chr9 48691943 48692023 -69170604 + GA-rich Low_complexity Low_complexity 5 87 0 1903 63 0 0 chr9 48692205 48692426 -69170201 + AluY SINE Alu 1 221 -90 367 353 87 23 chr9 48692572 48692872 -69169755 + L2 LINE L2 2269 2587 -727 637 109 109 0 chr9 48692928 48693020 -69169607 - THE1B LTR MaLR -52 312 211 378 294 20 20 chr9 48693026 48693172 -69169455 + L2 LINE L2 2642 2787 -527 273 335 61 57 chr9 48693657 48693953 -69168674 - L2 LINE L2 -711 2603 2307 1250 46 0 20 chr9 48694019 48694172 -69168455 + AluY SINE Alu 155 304 -7 2366 87 10 0 chr9 48694181 48694491 -69168136 + AluSp SINE Alu 1 313 0 701 251 69 35 chr9 48694568 48694943 -69167684 + LTR33 LTR ERVL 1 466 -55 2243 97 3 0 chr9 48694943 48695257 -69167370 + AluSp SINE Alu 1 315 0 701 251 69 35 chr9 48695257 48695316 -69167311 + LTR33 LTR ERVL 466 521 0 759 200 87 0 chr9 48696243 48696393 -69166234 + FRAM SINE Alu 1 155 -21 208 208 21 0 chr9 48696712 48696760 -69165867 - L2 LINE L2 -1 3271 3223 513 391 114 63 chr9 48696987 48697163 -69165464 - L3 LINE CR1 -365 1212 1046 2397 84 3 0 chr9 48697163 48697459 -69165168 - AluSp SINE Alu -16 297 1 513 391 114 63 chr9 48697459 48697626 -69165001 - L3 LINE CR1 -531 1046 889 2100 129 0 10 chr9 48697626 48697928 -69164699 - AluSx SINE Alu -13 299 1 513 391 114 63 chr9 48697928 48698484 -69164143 - L3 LINE CR1 -688 889 266 1663 221 43 51 chr9 48698515 48698690 -69163937 + MLT1D LTR MaLR 1 176 -329 2018 120 27 13 chr9 48698690 48698991 -69163636 - AluSx SINE Alu -7 305 1 1663 221 43 51 chr9 48698991 48699323 -69163304 + MLT1D LTR MaLR 176 504 -1 1449 199 31 0 chr9 48699586 48699847 -69162780 - AluJb SINE Alu -20 292 24 363 319 39 7 chr9 48699987 48700126 -69162501 + MIR3 SINE MIR 35 179 -29 2248 97 0 0 chr9 48700556 48700856 -69161771 + AluSx SINE Alu 1 300 -12 397 330 114 26 chr9 48700858 48701471 -69161156 + L2 LINE L2 1489 2155 -1159 610 267 147 58 chr9 48701532 48701966 -69160661 - L2 LINE L2 -77 3236 2761 338 343 68 18 chr9 48701996 48702215 -69160412 + L2 LINE L2 2656 2885 -429 584 160 10 0 chr9 48702264 48702364 -69160263 - Charlie5 DNA MER1_type -27 2585 2485 1080 145 0 6 chr9 48702364 48702559 -69160068 - AluJ SINE Alu 0 307 114 1004 77 0 0 chr9 48703171 48703301 -69159326 + AluSp/q SINE Alu 171 300 -13 1772 187 0 0 chr9 48703345 48703655 -69158972 - AluJo SINE Alu -2 310 1 687 176 48 0 chr9 48703686 48703811 -69158816 - AluJ SINE Alu -176 136 6 278 276 83 70 chr9 48704130 48704261 -69158366 + L1ME LINE L1 5422 5559 -562 1460 151 34 27 chr9 48704261 48704559 -69158068 - AluJb SINE Alu -12 300 1 278 276 83 70 chr9 48704559 48704655 -69157972 + L1ME LINE L1 5559 5652 -469 1011 133 0 0 chr9 48704685 48704836 -69157791 + AluSg/x SINE Alu 136 286 -26 386 324 140 26 chr9 48706027 48706299 -69156328 - L3b LINE CR1 -3 1580 1278 940 177 39 6 chr9 48706341 48706522 -69156105 - MER5A DNA MER1_type -2 187 1 1044 134 14 4 chr9 48706804 48707022 -69155605 - AluSq SINE Alu -1 312 1 3231 42 0 0 chr9 48707087 48707469 -69155158 - L1PA7 LINE L1 0 6154 5773 261 326 71 0 chr9 48708000 48708119 -69154508 + MIR SINE MIR 18 151 -57 597 290 120 59 chr9 48708123 48708221 -69154406 + L2 LINE L2 2783 2874 -439 1976 108 0 0 chr9 48708221 48708523 -69154104 - AluSg1 SINE Alu 0 302 1 597 290 120 59 chr9 48708523 48708797 -69153830 + L2 LINE L2 2874 3206 -107 1125 191 51 9 chr9 48708797 48709012 -69153615 + MER58A DNA MER1_type 1 224 0 597 290 120 59 chr9 48709012 48709128 -69153499 + L2 LINE L2 3206 3313 0 186 43 0 0 chr9 48709262 48709285 -69153342 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2244 77 0 13 chr9 48709307 48709620 -69153007 - AluSg1 SINE Alu 0 309 1 2371 71 3 13 chr9 48709620 48709930 -69152697 - AluSx SINE Alu -5 307 1 1827 187 18 3 chr9 48710505 48710836 -69151791 + MER58B DNA MER1_type 4 339 -2 682 248 87 52 chr9 48711014 48711264 -69151363 + MIR SINE MIR 6 262 0 285 344 57 16 chr9 48711351 48711473 -69151154 + MIR3 SINE MIR 15 141 -67 1796 111 64 4 chr9 48711897 48712177 -69150450 - AluSx SINE Alu -15 297 1 428 204 130 0 chr9 48712237 48712345 -69150282 + MIR SINE MIR 135 256 -6 237 283 208 0 chr9 48712584 48712690 -69149937 - L3b LINE CR1 -284 1299 1172 299 111 0 19 chr9 48712857 48712911 -69149716 + (TCCC)n Simple_repeat Simple_repeat 3 55 0 802 28 9 9 chr9 48712911 48713017 -69149610 + (TTTC)n Simple_repeat Simple_repeat 4 109 0 1832 113 4 7 chr9 48713029 48713303 -69149324 - AluSx SINE Alu -39 273 1 2456 4 0 0 chr9 48713361 48713632 -69148995 - AluYa5 SINE Alu -5 306 36 1965 114 35 0 chr9 48713954 48714243 -69148384 + AluSq SINE Alu 1 299 -14 40 37 0 0 chr9 48714767 48714821 -69147806 + AT_rich Low_complexity Low_complexity 1 54 0 2319 75 3 7 chr9 48715582 48715889 -69146738 + AluSq SINE Alu 1 306 -7 617 347 27 57 chr9 48715894 48716059 -69146568 + L1ME4a LINE L1 4544 4712 -1434 195 42 0 0 chr9 48716059 48716083 -69146544 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 617 347 27 57 chr9 48716083 48716464 -69146163 + L1ME4a LINE L1 4712 5074 -1072 586 315 82 54 chr9 48716522 48716639 -69145988 + L1ME4a LINE L1 5628 5740 -381 2231 124 39 33 chr9 48716639 48717001 -69145626 - THE1B LTR MaLR 0 364 1 586 315 82 54 chr9 48717001 48717235 -69145392 + L1ME4a LINE L1 5740 5989 -132 2262 89 0 0 chr9 48717390 48717694 -69144933 + AluY SINE Alu 1 304 -7 208 384 112 0 chr9 48717697 48717822 -69144805 - L2 LINE L2 -674 2640 2502 831 292 59 79 chr9 48718241 48718813 -69143814 + L2 LINE L2 2720 3305 -8 473 325 84 50 chr9 48719003 48719091 -69143536 - L2 LINE L2 0 3272 3188 2009 117 0 0 chr9 48719091 48719408 -69143219 + AluSx SINE Alu 2 318 0 473 325 84 50 chr9 48719408 48719736 -69142891 - L2 LINE L2 -84 3188 2841 247 367 170 21 chr9 48719823 48720305 -69142322 - L2 LINE L2 -414 2900 2347 222 37 0 0 chr9 48720399 48720426 -69142201 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 2056 101 4 0 chr9 48720433 48720711 -69141916 - AluSp SINE Alu -33 280 2 1439 295 57 2 chr9 48720872 48721292 -69141335 - LTR16A LTR ERVL 0 450 8 1953 148 0 7 chr9 48721314 48721619 -69141008 - AluSx SINE Alu -8 304 2 430 282 103 0 chr9 48721718 48721835 -69140792 - L2 LINE L2 -4 3268 3140 192 40 0 0 chr9 48721839 48721864 -69140763 + (TAA)n Simple_repeat Simple_repeat 2 26 0 285 156 0 0 chr9 48721910 48721955 -69140672 + Alu SINE Alu 1 45 -256 1430 169 14 47 chr9 48722314 48722610 -69140017 - AluJo SINE Alu -18 294 9 246 264 96 11 chr9 48722627 48722805 -69139822 - L1ME LINE L1 -301 5820 5628 2243 112 0 0 chr9 48722807 48723119 -69139508 - AluSq SINE Alu 0 313 2 632 302 99 45 chr9 48723298 48723722 -69138905 + LTR67 LTR ERVL 97 543 -14 2129 117 0 7 chr9 48723933 48724242 -69138385 + AluSc SINE Alu 1 307 -2 1669 159 4 0 chr9 48724276 48724547 -69138080 + AluSx SINE Alu 36 307 -5 572 303 95 4 chr9 48724815 48725046 -69137581 + MARNA DNA Mariner 159 410 -176 504 289 107 0 chr9 48725094 48725253 -69137374 - MIR SINE MIR -51 211 36 1322 180 100 87 chr9 48725386 48725846 -69136781 + MER31B LTR ERV1 1 466 0 30 0 0 0 chr9 48727122 48727152 -69135475 + AT_rich Low_complexity Low_complexity 1 30 0 297 253 0 13 chr9 48727431 48727510 -69135117 - MLT1K LTR MaLR -2 586 509 23 33 0 0 chr9 48730349 48730379 -69132248 + AT_rich Low_complexity Low_complexity 1 30 0 2043 107 19 3 chr9 48730527 48730835 -69131792 - AluSq SINE Alu 0 313 1 933 232 73 42 chr9 48730886 48731409 -69131218 + L2 LINE L2 2518 3076 -237 2145 92 4 0 chr9 48731409 48731710 -69130917 + AluSp SINE Alu 1 302 0 933 232 73 42 chr9 48731710 48731813 -69130814 + L2 LINE L2 3076 3174 -139 533 219 38 44 chr9 48732094 48732254 -69130373 - L1ME LINE L1 -389 5732 5574 1217 58 0 7 chr9 48732277 48732432 -69130195 + AluY SINE Alu 1 154 -157 332 280 70 21 chr9 48732677 48732820 -69129807 - L1MC4 LINE L1 -368 7674 7525 2288 53 0 0 chr9 48733351 48733635 -69128992 + AluY SINE Alu 1 284 -27 2215 79 0 0 chr9 48733899 48734178 -69128449 + AluSg SINE Alu 1 279 -31 2079 113 0 0 chr9 48735672 48735965 -69126662 + AluSx SINE Alu 5 297 -15 2069 105 7 0 chr9 48736051 48736346 -69126281 + AluSg SINE Alu 1 297 -13 23 86 0 0 chr9 48739520 48739578 -69123049 + GC_rich Low_complexity Low_complexity 1 58 0 291 276 0 0 chr9 48739616 48739692 -69122935 + (CGG)n Simple_repeat Simple_repeat 3 78 0 2240 93 0 10 chr9 48743690 48744002 -69118625 + AluY SINE Alu 1 309 -2 2049 90 0 4 chr9 48745198 48745477 -69117150 + AluSc SINE Alu 1 278 -31 264 77 0 0 chr9 48745480 48745519 -69117108 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 197 397 0 35 chr9 48745750 48745866 -69116761 - MIR SINE MIR -122 140 29 1954 144 30 15 chr9 48746100 48746188 -69116439 - MER2 DNA MER2_type 0 344 259 2071 115 0 26 chr9 48746188 48746501 -69116126 + AluSx SINE Alu 1 305 -7 1954 144 30 15 chr9 48746501 48746751 -69115876 - MER2 DNA MER2_type -85 259 1 21 57 0 0 chr9 48746787 48746822 -69115805 + AT_rich Low_complexity Low_complexity 1 35 0 314 341 131 41 chr9 48746949 48747269 -69115358 + L1MC/D LINE L1 4985 5333 -813 538 310 78 22 chr9 48747286 48747554 -69115073 + L1MC/D LINE L1 5373 5655 -2153 285 208 31 100 chr9 48747838 48747968 -69114659 + HAL1b LINE L1 1226 1346 -2 640 128 0 0 chr9 48748523 48748625 -69114002 - AluJb SINE Alu 0 312 211 2045 110 7 0 chr9 48749023 48749322 -69113305 - AluSg1 SINE Alu -8 301 1 2283 56 0 3 chr9 48749765 48750051 -69112576 + AluY SINE Alu 1 285 -26 198 103 0 0 chr9 48750051 48750080 -69112547 + (TA)n Simple_repeat Simple_repeat 2 30 0 698 152 61 38 chr9 48751607 48751739 -69110888 - FLAM_C SINE Alu -8 135 1 306 0 0 0 chr9 48752267 48752301 -69110326 + (TG)n Simple_repeat Simple_repeat 2 35 0 469 197 68 26 chr9 48752452 48752569 -69110058 - FLAM_A SINE Alu -9 124 3 2459 84 0 7 chr9 48856463 48856773 -69005854 + AluY SINE Alu 1 308 -3 679 292 4 49 chr9 48858098 48858362 -69004265 - MIR SINE MIR -5 257 6 1249 182 76 83 chr9 48858614 48858727 -69003900 - MER39 LTR ERV1 0 687 575 2254 110 0 0 chr9 48858727 48859017 -69003610 - AluSq SINE Alu -23 290 1 1249 182 76 83 chr9 48859017 48859326 -69003301 - MER39 LTR ERV1 -112 575 89 1072 57 253 6 chr9 48859455 48859585 -69003042 + MER107 DNA MER1_type 1 98 -99 194 61 0 30 chr9 48859585 48859618 -69003009 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 1072 57 253 6 chr9 48859618 48859645 -69002982 + MER107 DNA MER1_type 98 197 0 27 62 0 0 chr9 48859666 48859714 -69002913 + AT_rich Low_complexity Low_complexity 1 48 0 452 250 23 62 chr9 48865045 48865221 -68997406 + MER112 DNA MER1_type 8 176 -84 497 303 91 10 chr9 48865321 48865519 -68997108 + MIR SINE MIR 48 261 -1 29 28 0 0 chr9 48865539 48865575 -68997052 + AT_rich Low_complexity Low_complexity 1 36 0 2121 201 39 13 chr9 48865746 48866203 -68996424 + MER70B LTR ERVL 1 469 -109 962 28 0 0 chr9 48866430 48866537 -68996090 + L1PA3 LINE L1 6049 6155 0 961 169 241 86 chr9 48867583 48867997 -68994630 - MER66A LTR ERV1 -3 475 97 204 289 93 41 chr9 48869099 48869196 -68993431 - L2 LINE L2 -239 3033 2932 431 281 7 15 chr9 48869265 48869400 -68993227 - MER5A DNA MER1_type -28 161 28 653 184 0 0 chr9 48869551 48869649 -68992978 - AluJ/FLAM SINE Alu -213 99 2 1989 124 0 34 chr9 48870220 48870518 -68992109 + AluJb SINE Alu 12 299 -13 1933 162 3 10 chr9 48870598 48870912 -68991715 + AluJb SINE Alu 1 312 0 2434 84 0 0 chr9 48871596 48871892 -68990735 - AluSg SINE Alu -14 296 1 432 58 0 58 chr9 48873024 48873093 -68989534 - L1PA10 LINE L1 -3 6165 6101 323 194 32 0 chr9 48873583 48873645 -68988982 + MER46C DNA MER2_type 275 338 0 274 279 128 0 chr9 48873645 48873731 -68988896 - MIR SINE MIR -111 151 55 1079 88 0 27 chr9 48874086 48874234 -68988393 + AluSc SINE Alu 159 302 -7 800 167 11 11 chr9 48874234 48874414 -68988213 + CT-rich Low_complexity Low_complexity 1 180 0 232 125 0 0 chr9 48874414 48874446 -68988181 + (TCC)n Simple_repeat Simple_repeat 3 34 0 2483 60 0 3 chr9 48875459 48875758 -68986869 + AluY SINE Alu 1 298 -13 338 266 16 47 chr9 48875808 48875936 -68986691 + L1ME LINE L1 5696 5819 -302 502 208 299 0 chr9 48876300 48876521 -68986106 - L2 LINE L2 -491 2823 2537 226 200 86 43 chr9 48876519 48876589 -68986038 - MIR SINE MIR -33 229 157 * 361 260 59 99 chr9 48876598 48876702 -68985925 - LTR48 LTR ERV1 0 787 680 1722 149 0 85 chr9 48876702 48877031 -68985596 - AluJb SINE Alu -11 301 1 361 260 59 99 chr9 48877031 48877199 -68985428 - LTR48 LTR ERV1 -107 680 526 1722 203 130 48 chr9 48877230 48877719 -68984908 - MER39 LTR ERV1 0 707 259 2788 80 17 3 chr9 48877719 48878068 -68984559 - THE1A LTR MaLR -1 354 1 12529 84 14 0 chr9 48878068 48879626 -68983001 - THE1A-int LTR MaLR 0 1580 1 2885 82 6 0 chr9 48879626 48879979 -68982648 - THE1A LTR MaLR 0 355 1 1722 203 130 48 chr9 48879979 48880019 -68982608 - MER39 LTR ERV1 -447 260 4 550 241 84 30 chr9 48880021 48880278 -68982349 - LTR48 LTR ERV1 -409 133 11 185 212 303 20 chr9 48880288 48880387 -68982240 - MIR SINE MIR -116 146 20 2405 84 7 0 chr9 48880589 48880888 -68981739 - AluSg SINE Alu -9 301 1 647 286 86 59 chr9 48880906 48881239 -68981388 + L1MC/D LINE L1 5276 5627 -697 4302 131 75 46 chr9 48881239 48882001 -68980626 - LTR1 LTR ERV1 -1 784 1 647 286 86 59 chr9 48882001 48882150 -68980477 + L1MC/D LINE L1 5627 5771 -553 2075 144 0 0 chr9 48882159 48882450 -68980177 + AluSx SINE Alu 1 291 -21 24 0 0 0 chr9 48882454 48882478 -68980149 + AT_rich Low_complexity Low_complexity 1 24 0 2187 96 24 0 chr9 48882485 48882776 -68979851 + AluSp SINE Alu 1 298 -15 22 43 0 21 chr9 48882925 48882949 -68979678 + AT_rich Low_complexity Low_complexity 1 25 -21 1914 153 3 13 chr9 48882949 48883249 -68979378 - AluJo SINE Alu -15 297 1 22 43 0 21 chr9 48883249 48883271 -68979356 + AT_rich Low_complexity Low_complexity 25 46 0 415 317 12 18 chr9 48883298 48883462 -68979165 - MIR SINE MIR 0 262 100 364 203 14 0 chr9 48883463 48883537 -68979090 + L1MC4a LINE L1 7577 7651 -157 837 197 27 85 chr9 48883539 48883762 -68978865 - MER58B DNA MER1_type 0 341 132 1946 106 34 0 chr9 48883776 48884040 -68978587 + AluSx SINE Alu 1 273 -39 518 132 26 18 chr9 48884040 48884154 -68978473 + GA-rich Low_complexity Low_complexity 4 118 0 452 235 0 35 chr9 48884267 48884382 -68978245 + L1MC4 LINE L1 7780 7890 -152 477 323 116 23 chr9 48885378 48885688 -68976939 - L3 LINE CR1 -5 1572 1234 269 250 0 76 chr9 48886143 48886235 -68976392 + MLT1F LTR MaLR 15 99 -443 1834 117 0 8 chr9 48886269 48886439 -68976188 - AluY SINE Alu -14 297 128 441 0 0 0 chr9 48886439 48886488 -68976139 + (TG)n Simple_repeat Simple_repeat 2 50 0 1834 117 0 8 chr9 48886488 48886582 -68976045 - AluY SINE Alu -183 128 35 186 43 0 0 chr9 48888685 48888708 -68973919 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1668 219 45 54 chr9 48888726 48889260 -68973367 + LTR55 LTR ERV 1 529 -19 487 257 18 9 chr9 48889368 48889481 -68973146 + MER81 DNA DNA 1 114 0 820 203 0 0 chr9 48890021 48890154 -68972473 + FLAM_A SINE Alu 9 141 -1 607 245 65 35 chr9 48890379 48890579 -68972048 - LTR16C LTR ERVL 0 491 286 2165 239 11 4 chr9 48890585 48891045 -68971582 - MLT1F LTR MaLR -78 464 2 322 207 26 121 chr9 48891058 48891107 -68971520 + MIR SINE MIR 158 191 -71 2101 102 42 0 chr9 48891107 48891391 -68971236 - AluSc SINE Alu -11 298 3 322 207 26 121 chr9 48891391 48891457 -68971170 + MIR SINE MIR 191 262 0 856 167 18 24 chr9 48892308 48892476 -68970151 + MER5B DNA MER1_type 3 169 -9 1929 148 153 45 chr9 48892479 48892538 -68970089 - Charlie1b DNA MER1_type -2238 523 472 2368 69 14 3 chr9 48892538 48892827 -68969800 + AluY SINE Alu 1 292 -19 1929 148 153 45 chr9 48892827 48893010 -68969617 - Charlie1b DNA MER1_type -2289 472 310 2159 107 3 17 chr9 48893010 48893333 -68969294 - AluSx SINE Alu 0 312 1 1929 148 153 45 chr9 48893333 48893561 -68969066 - Charlie1b DNA MER1_type -2451 310 1 271 259 0 0 chr9 48893801 48893859 -68968768 + CT-rich Low_complexity Low_complexity 3 60 0 470 280 10 62 chr9 48893973 48894033 -68968594 - MER5A DNA MER1_type -3 186 124 2319 65 7 0 chr9 48894033 48894325 -68968302 + AluY SINE Alu 1 294 -17 470 280 10 62 chr9 48894325 48894457 -68968170 - MER5A DNA MER1_type -65 124 4 687 328 101 21 chr9 48894742 48895120 -68967507 + L3 LINE CR1 1169 1576 -1 396 213 0 0 chr9 48895389 48895469 -68967158 + MER5A DNA MER1_type 6 85 -104 1880 211 195 7 chr9 48895987 48896443 -68966184 - MLT1F LTR MaLR 0 542 1 433 178 0 14 chr9 48897107 48897180 -68965447 - AluS SINE Alu -235 78 7 914 161 6 12 chr9 48897180 48897348 -68965279 - L1M4 LINE L1 -685 5489 5323 1780 155 22 0 chr9 48897348 48897619 -68965008 - AluJo SINE Alu -15 297 21 5860 215 38 47 chr9 48898003 48898181 -68964446 - L1M4 LINE L1 -814 5332 5154 1814 105 79 22 chr9 48898181 48898458 -68964169 + AluSq SINE Alu 1 293 -20 5860 215 38 47 chr9 48898458 48899130 -68963497 - L1M4 LINE L1 -992 5154 4478 241 158 0 0 chr9 48899130 48899168 -68963459 - tRNA-Gly-GGA tRNA tRNA -37 38 1 5860 215 38 47 chr9 48899168 48899393 -68963234 - L1M4 LINE L1 -1668 4478 4253 246 62 0 0 chr9 48899393 48899425 -68963202 + (TG)n Simple_repeat Simple_repeat 1 32 0 5860 215 38 47 chr9 48899425 48899925 -68962702 - L1M4 LINE L1 -1893 4253 3732 234 0 0 0 chr9 48899953 48899979 -68962648 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 253 362 39 0 chr9 48900133 48900260 -68962367 + MIR SINE MIR 16 147 -61 21 0 0 0 chr9 48900288 48900309 -68962318 + AT_rich Low_complexity Low_complexity 1 21 0 4316 134 9 29 chr9 48900342 48900899 -68961728 + L1PB4 LINE L1 5470 6013 -143 2314 71 0 0 chr9 48900899 48901210 -68961417 - AluY SINE Alu 0 312 2 4316 134 9 29 chr9 48901210 48901352 -68961275 + L1PB4 LINE L1 6013 6156 0 217 352 0 0 chr9 48901591 48901662 -68960965 - L2 LINE L2 -236 3036 2966 2264 150 19 27 chr9 48901899 48902266 -68960361 - THE1B LTR MaLR 0 364 1 12607 96 2 7 chr9 48902266 48904162 -68958465 - THE1B-int LTR MaLR 0 1580 2 5336 75 0 16 chr9 48903162 48903355 -68959272 - THE1B-int LTR MaLR -900 680 485 2256 113 0 3 chr9 48903355 48903666 -68958961 - AluSg SINE Alu 0 310 1 5336 75 0 16 chr9 48903666 48904163 -68958464 - THE1B-int LTR MaLR -1095 485 1 2546 107 16 45 chr9 48904163 48904538 -68958089 - THE1B LTR MaLR 0 364 1 908 169 0 0 chr9 48904583 48904713 -68957914 - FLAM_C SINE Alu -3 130 1 299 55 0 73 chr9 48904771 48904826 -68957801 + (TAA)n Simple_repeat Simple_repeat 1 51 0 320 246 0 14 chr9 48905891 48905960 -68956667 - L2 LINE L2 -25 3288 3221 879 221 0 0 chr9 48906348 48906511 -68956116 + FRAM SINE Alu 2 164 -12 345 319 26 17 chr9 48906597 48906713 -68955914 - MIR SINE MIR -114 148 32 2287 81 0 36 chr9 48906866 48907175 -68955452 + AluSp SINE Alu 5 302 -11 1799 148 16 32 chr9 48907726 48908037 -68954590 + AluJb SINE Alu 1 306 -6 1533 281 97 64 chr9 48908321 48908990 -68953637 - MER115 DNA AcHobo -2 691 1 549 332 75 13 chr9 48910230 48910456 -68952171 + MIR SINE MIR 8 247 -15 553 176 0 0 chr9 48910508 48910593 -68952034 - Tigger7 DNA MER2_type 0 2487 2403 * 2939 167 53 19 chr9 48910589 48911121 -68951506 - Tigger7 DNA MER2_type -183 550 1 400 244 205 26 chr9 48911121 48911192 -68951435 - MIR SINE MIR -64 198 141 2025 126 4 0 chr9 48911192 48911469 -68951158 + AluSx SINE Alu 17 294 -18 400 244 205 26 chr9 48911469 48911553 -68951074 - MIR SINE MIR -121 141 15 279 106 0 43 chr9 48912273 48912320 -68950307 + MLT1B LTR MaLR 1 45 -345 598 123 0 0 chr9 48912322 48912403 -68950224 - 5S rRNA rRNA -35 86 6 1686 150 82 32 chr9 48912406 48912747 -68949880 + MLT1B LTR MaLR 33 390 0 521 325 32 16 chr9 48912829 48913017 -68949610 - MIR SINE MIR -70 192 2 2663 151 24 24 chr9 48913737 48914162 -68948465 + MSTB LTR MaLR 1 425 -1 23 33 0 0 chr9 48914423 48914453 -68948174 + AT_rich Low_complexity Low_complexity 1 30 0 2289 106 3 0 chr9 48914775 48915078 -68947549 - AluSx SINE Alu -8 304 1 2068 116 0 10 chr9 48915260 48915554 -68947073 + AluSq SINE Alu 1 291 -22 22 0 0 0 chr9 48916146 48916168 -68946459 + AT_rich Low_complexity Low_complexity 1 22 0 1682 99 9 0 chr9 48916245 48916467 -68946160 + AluSq SINE Alu 1 224 -89 289 42 21 21 chr9 48917254 48917302 -68945325 + (TC)n Simple_repeat Simple_repeat 2 49 0 225 119 0 0 chr9 48917302 48917344 -68945283 + (CA)n Simple_repeat Simple_repeat 1 42 0 486 252 39 39 chr9 48917615 48917821 -68944806 - MLT1K LTR MaLR -17 571 366 527 186 41 1 chr9 48918229 48918338 -68944289 + L1ME3 LINE L1 6039 6140 -22 1709 106 26 46 chr9 48918729 48918945 -68943682 - MER44D DNA MER2_type -1882 609 390 1477 169 75 0 chr9 48918945 48919212 -68943415 + AluJo SINE Alu 6 292 -20 1709 106 26 46 chr9 48919212 48919297 -68943330 - MER44D DNA MER2_type -2101 390 44 464 305 24 7 chr9 48919404 48919594 -68943033 + MIR SINE MIR 15 207 -54 959 129 86 0 chr9 48920255 48920395 -68942232 - AluSg SINE Alu -135 175 24 341 274 128 30 chr9 48920493 48920657 -68941970 - MIR SINE MIR -20 242 63 1790 114 53 0 chr9 48920698 48920960 -68941667 + AluSg SINE Alu 24 299 -11 1324 193 97 11 chr9 48921164 48921433 -68941194 + AluJo SINE Alu 13 304 -8 237 163 0 0 chr9 48921438 48921487 -68941140 + GA-rich Low_complexity Low_complexity 4 52 0 29 47 0 0 chr9 48921734 48921777 -68940850 + AT_rich Low_complexity Low_complexity 1 43 0 2340 95 0 16 chr9 48922896 48923212 -68939415 + AluY SINE Alu 1 311 0 2195 104 3 0 chr9 48924197 48924484 -68938143 - AluSq SINE Alu -21 292 5 317 203 0 14 chr9 48924633 48924702 -68937925 + L1ME4a LINE L1 6051 6118 -3 207 0 0 0 chr9 48924702 48924725 -68937902 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1957 119 7 40 chr9 48924789 48925092 -68937535 + AluSx SINE Alu 1 293 -19 532 262 81 29 chr9 48925532 48925742 -68936885 + MIR SINE MIR 41 261 -1 2062 118 3 14 chr9 48925822 48926144 -68936483 - AluSq SINE Alu 0 319 1 2270 168 8 3 chr9 48926350 48926713 -68935914 - MLT1A1 LTR MaLR 0 365 1 1668 86 148 4 chr9 48926775 48927046 -68935581 + AluSg SINE Alu 1 306 0 523 270 73 13 chr9 48927058 48927267 -68935360 - MIR SINE MIR -2 260 36 291 28 0 0 chr9 48928024 48928060 -68934567 + (TG)n Simple_repeat Simple_repeat 1 36 0 205 360 10 10 chr9 48929126 48929226 -68933401 - MIR SINE MIR 0 262 163 208 143 0 0 chr9 48929258 48929293 -68933334 + (CAA)n Simple_repeat Simple_repeat 3 37 0 331 256 117 60 chr9 48929437 48929753 -68932874 - L1ME4a LINE L1 -2 6119 5786 347 242 83 50 chr9 48929756 48929876 -68932751 - L2 LINE L2 -4 3309 3186 2051 122 4 0 chr9 48929926 48930205 -68932422 + AluSx SINE Alu 1 280 -32 366 23 0 0 chr9 48930205 48930248 -68932379 + (TAA)n Simple_repeat Simple_repeat 2 44 0 381 264 91 8 chr9 48930256 48930377 -68932250 - MIR SINE MIR -16 246 116 436 187 27 0 chr9 48930406 48930481 -68932146 + MLT1D LTR MaLR 1 77 -428 1649 159 114 114 chr9 48930514 48930568 -68932059 + MLT1D LTR MaLR 60 113 -392 2102 123 20 0 chr9 48930568 48930860 -68931767 - AluSx SINE Alu -14 298 1 1649 159 114 114 chr9 48930860 48931251 -68931376 + MLT1D LTR MaLR 112 505 0 222 277 0 0 chr9 48931254 48931301 -68931326 - MIR SINE MIR -201 61 15 253 272 9 70 chr9 48931789 48931903 -68930724 - L1ME4a LINE L1 -412 5709 5603 2604 155 5 0 chr9 48932040 48932428 -68930199 - MLT1B LTR MaLR 0 390 1 329 303 0 0 chr9 48932499 48932588 -68930039 - L1MC4 LINE L1 -1340 6702 6614 2039 98 0 4 chr9 48932595 48932861 -68929766 - AluSq SINE Alu -22 291 27 3122 100 38 96 chr9 48932886 48933072 -68929555 + Tigger3b DNA MER2_type 32 227 -2801 2247 90 4 0 chr9 48933072 48933350 -68929277 + AluSc SINE Alu 1 279 -30 3122 100 38 96 chr9 48933350 48933477 -68929150 + Tigger3b DNA MER2_type 227 360 -2668 2414 85 0 0 chr9 48933477 48933771 -68928856 - AluSc SINE Alu -15 294 1 3122 100 38 96 chr9 48933771 48934247 -68928380 + Tigger3b DNA MER2_type 360 767 -464 1050 174 0 0 chr9 48934246 48934413 -68928214 + Tigger3b DNA MER2_type 1074 1240 -1 * 699 210 81 54 chr9 48935430 48935452 -68927175 - MER20 DNA MER1_type 0 219 199 4219 93 55 0 chr9 48935452 48936002 -68926625 - LTR19B LTR ERV1 0 580 1 699 210 81 54 chr9 48936002 48936165 -68926462 - MER20 DNA MER1_type -20 199 29 2382 200 37 10 chr9 48936170 48936656 -68925971 - MLT1D LTR MaLR -5 500 2 512 251 128 57 chr9 48936700 48936762 -68925865 + MIR SINE MIR 34 90 -172 2145 107 0 35 chr9 48936762 48937079 -68925548 - AluSx SINE Alu -6 306 1 512 251 128 57 chr9 48937079 48937227 -68925400 + MIR SINE MIR 90 259 -3 891 249 54 17 chr9 48937444 48937685 -68924942 - MIR SINE MIR -11 251 2 295 247 47 12 chr9 48937965 48938050 -68924577 + MER5A DNA MER1_type 102 189 0 1414 171 98 55 chr9 48938716 48938731 -68923896 - MER58B DNA MER1_type -2079 341 328 2008 151 0 7 chr9 48938731 48939036 -68923591 - AluJb SINE Alu -9 303 1 1414 171 98 55 chr9 48939036 48939066 -68923561 - MER58B DNA MER1_type -2092 328 301 2084 128 7 3 chr9 48939066 48939364 -68923263 + AluSq SINE Alu 1 299 -14 1414 171 98 55 chr9 48939364 48939644 -68922983 - MER58B DNA MER1_type -2119 301 1 21 0 0 0 chr9 48939897 48939918 -68922709 + AT_rich Low_complexity Low_complexity 1 21 0 2192 119 0 0 chr9 48939927 48940220 -68922407 - AluSg SINE Alu -17 293 1 2087 120 0 0 chr9 48940446 48940721 -68921906 + AluSg SINE Alu 1 275 -35 243 88 0 0 chr9 48940729 48940763 -68921864 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 855 183 104 55 chr9 48940764 48941089 -68921538 + MLT1B LTR MaLR 45 390 0 720 256 94 18 chr9 48941124 48941347 -68921280 - MIR SINE MIR -3 259 20 24 0 0 0 chr9 48941347 48941371 -68921256 + AT_rich Low_complexity Low_complexity 1 24 0 3381 57 2 0 chr9 48941373 48941774 -68920853 - L1PA6 LINE L1 -7 6147 5746 644 199 103 19 chr9 48942317 48942473 -68920154 + MIR SINE MIR 2 170 -92 2028 102 48 10 chr9 48942637 48942931 -68919696 + AluSp SINE Alu 1 305 -8 214 354 41 29 chr9 48943632 48943742 -68918885 - MIR SINE MIR -83 125 7 230 320 61 46 chr9 48943897 48944094 -68918533 + L2 LINE L2 1812 2011 -1303 201 290 32 0 chr9 48944169 48944231 -68918396 - MIR SINE MIR -10 252 189 188 242 32 32 chr9 48944625 48944687 -68917940 - L2 LINE L2 -93 3220 3159 2198 127 0 13 chr9 48946832 48947146 -68915481 + AluSx SINE Alu 1 310 -2 620 279 10 40 chr9 48947584 48947785 -68914842 - MIR3 SINE MIR -6 202 8 599 105 0 19 chr9 48947815 48947920 -68914707 - L1MA7 LINE L1 0 6291 6189 2165 105 13 0 chr9 48947930 48948234 -68914393 - AluSx SINE Alu -2 310 3 828 179 0 19 chr9 48948388 48948544 -68914083 + FRAM SINE Alu 18 170 -6 2410 65 0 10 chr9 48948591 48948884 -68913743 - AluY SINE Alu -21 290 1 2152 125 0 0 chr9 48949338 48949625 -68913002 + AluSx SINE Alu 6 292 -20 2108 117 11 0 chr9 48950430 48950746 -68911881 + AluSp SINE Alu 1 319 0 2261 104 3 3 chr9 48950861 48951169 -68911458 + AluSx SINE Alu 1 308 -4 237 254 0 16 chr9 48951197 48951260 -68911367 - L2 LINE L2 -38 3234 3173 443 270 59 44 chr9 48951465 48951637 -68910990 - MLT1J2 LTR MaLR -243 207 30 1928 149 43 139 chr9 48951637 48952153 -68910474 - MER31B LTR ERV1 0 466 1 443 270 59 44 chr9 48952153 48952184 -68910443 - MLT1J2 LTR MaLR -420 30 1 2236 101 16 0 chr9 48952497 48952803 -68909824 - AluSp SINE Alu -2 311 1 1454 227 30 39 chr9 48952840 48953201 -68909426 + MLT1C LTR MaLR 8 365 -102 743 179 0 8 chr9 48953201 48953362 -68909265 - FLAM_C SINE Alu 0 143 2 600 194 0 9 chr9 48953362 48953470 -68909157 + MLT1C LTR MaLR 355 461 -6 1929 192 64 0 chr9 48954075 48954418 -68908209 - MLT1A1 LTR MaLR 0 365 1 360 358 82 10 chr9 48955013 48955220 -68907407 - MIR SINE MIR -21 241 20 1790 190 13 0 chr9 48955973 48956278 -68906349 + AluSx SINE Alu 1 309 -3 1994 96 0 0 chr9 48956472 48956723 -68905904 - AluSq SINE Alu -62 251 1 2259 103 3 6 chr9 48956738 48957049 -68905578 - AluSp SINE Alu -3 310 1 191 167 183 33 chr9 48957074 48957134 -68905493 - MER5B DNA MER1_type -29 149 81 2393 62 3 7 chr9 48957174 48957479 -68905148 - AluY SINE Alu -7 304 1 2233 86 13 33 chr9 48958595 48958899 -68903728 - AluY SINE Alu -13 298 1 190 305 98 12 chr9 48959000 48959082 -68903545 - MIR SINE MIR -126 136 48 2474 93 3 0 chr9 48959637 48959949 -68902678 + AluSp SINE Alu 1 313 0 2140 101 54 0 chr9 48959966 48960262 -68902365 + AluSx SINE Alu 1 312 0 2305 135 114 5 chr9 48960463 48960849 -68901778 + MSTA LTR MaLR 1 428 0 422 169 118 9 chr9 48960860 48961011 -68901616 + MER33 DNA MER1_type 26 316 -8 2274 96 3 0 chr9 48961011 48961302 -68901325 + AluSp SINE Alu 1 292 -21 189 0 0 0 chr9 48961302 48961323 -68901304 + (TA)n Simple_repeat Simple_repeat 1 21 0 2100 129 0 10 chr9 48961403 48961706 -68900921 + AluSx SINE Alu 1 300 -12 2094 97 12 60 chr9 48964582 48964901 -68897726 + AluY SINE Alu 1 304 -7 245 219 451 24 chr9 48965356 48965520 -68897107 - MIR SINE MIR -27 235 2 1995 96 8 0 chr9 48965963 48966224 -68896403 + AluSp SINE Alu 1 263 -50 191 306 0 20 chr9 48969054 48969103 -68893524 + MIR SINE MIR 25 72 -190 201 162 0 0 chr9 48971083 48971120 -68891507 + A-rich Low_complexity Low_complexity 2 38 0 22 35 0 0 chr9 48974339 48974368 -68888259 + AT_rich Low_complexity Low_complexity 1 29 0 466 231 127 15 chr9 48976039 48976173 -68886454 + MIR3 SINE MIR 33 181 -27 21 0 0 0 chr9 48977408 48977429 -68885198 + GC_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr9 48977853 48977874 -68884753 + (CGG)n Simple_repeat Simple_repeat 1 21 0 395 283 66 33 chr9 48979253 48979405 -68883222 - MIR SINE MIR -21 241 85 947 175 105 6 chr9 48979726 48979897 -68882730 + MER5A DNA MER1_type 2 189 0 2084 125 0 11 chr9 48980217 48980536 -68882091 + AluSc SINE Alu 1 316 0 2092 132 3 3 chr9 48980570 48980866 -68881761 + AluSx SINE Alu 1 296 -16 261 311 8 50 chr9 48980870 48980989 -68881638 - L2 LINE L2 -25 3247 3134 2130 102 3 0 chr9 48981509 48981820 -68880807 + AluSq SINE Alu 1 312 0 2213 107 3 7 chr9 48982014 48982324 -68880303 + AluY SINE Alu 1 309 -2 1483 133 140 7 chr9 48982540 48982811 -68879816 - AluSq SINE Alu -6 307 1 649 134 62 0 chr9 48983015 48983112 -68879515 + AluSq/x SINE Alu 2 104 -208 1876 115 4 19 chr9 48983118 48983208 -68879419 + AluSx SINE Alu 47 137 -175 2361 95 20 0 chr9 48983208 48983514 -68879113 + AluSx SINE Alu 1 312 0 1876 115 4 19 chr9 48983514 48983693 -68878934 + AluSx SINE Alu 137 312 0 330 257 37 52 chr9 48984011 48984147 -68878480 - MIR SINE MIR -56 206 73 1545 162 70 4 chr9 48984249 48984520 -68878107 - AluSx SINE Alu -17 295 7 2154 119 0 10 chr9 48984540 48984843 -68877784 - AluSc SINE Alu -9 300 1 278 366 21 14 chr9 48984898 48985040 -68877587 + L2 LINE L2 2069 2211 -1103 1773 160 3 17 chr9 48985132 48985440 -68877187 - AluSx SINE Alu 0 304 1 6394 131 15 31 chr9 48985805 48985940 -68876687 + L1MC1 LINE L1 5265 5401 -932 2443 69 0 7 chr9 48985940 48986244 -68876383 + AluY SINE Alu 1 302 -9 6394 131 15 31 chr9 48986244 48986745 -68875882 + L1MC1 LINE L1 5401 5882 -451 2307 82 0 3 chr9 48986745 48987036 -68875591 + AluSc SINE Alu 3 292 -17 6394 131 15 31 chr9 48987036 48987481 -68875146 + L1MC1 LINE L1 5882 6333 0 474 149 0 0 chr9 48987605 48987679 -68874948 - Alu SINE Alu -3 307 234 2341 101 0 0 chr9 48987679 48987976 -68874651 - AluSg SINE Alu -13 297 1 228 67 0 0 chr9 48988645 48988675 -68873952 - Alu SINE Alu -193 110 81 1395 81 6 0 chr9 48988675 48988848 -68873779 + AluSp SINE Alu 105 278 -35 216 86 0 0 chr9 48988850 48988885 -68873742 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 294 155 84 56 chr9 48988885 48988956 -68873671 + L3 LINE CR1 1500 1572 -5 2172 116 0 3 chr9 48988959 48989252 -68873375 + AluSg SINE Alu 1 292 -18 891 111 0 134 chr9 48989405 48989577 -68873050 - AluSc SINE Alu -17 292 144 517 283 151 10 chr9 48989667 48989872 -68872755 - MIR SINE MIR 0 262 29 239 384 30 18 chr9 48989915 48990003 -68872624 - L3 LINE CR1 -5 1572 1480 1996 108 44 14 chr9 48990003 48990298 -68872329 + AluSp SINE Alu 1 304 -9 239 384 30 18 chr9 48990298 48990373 -68872254 - L3 LINE CR1 -97 1480 1407 2530 43 3 10 chr9 48990406 48990711 -68871916 + AluY SINE Alu 1 303 -8 2164 106 0 0 chr9 48990779 48991071 -68871556 + AluSx SINE Alu 20 311 -1 2259 103 3 3 chr9 48991154 48991455 -68871172 - AluSg SINE Alu -9 301 1 23 54 0 0 chr9 48991709 48991746 -68870881 + AT_rich Low_complexity Low_complexity 1 37 0 373 254 103 18 chr9 48991866 48992060 -68870567 - L1MC4a LINE L1 -396 5760 5641 1488 131 161 11 chr9 48992103 48992363 -68870264 - AluSg1 SINE Alu -8 301 3 250 209 0 47 chr9 48992488 48992574 -68870053 + CT-rich Low_complexity Low_complexity 3 84 0 767 126 0 53 chr9 48992574 48992764 -68869863 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2054 119 0 7 chr9 48992932 48993241 -68869386 + AluSx SINE Alu 1 307 0 302 326 14 14 chr9 48993246 48993384 -68869243 - MIR SINE MIR -4 258 121 647 207 9 0 chr9 48993544 48993655 -68868972 - MER81 DNA DNA 0 114 3 1787 121 78 18 chr9 48993785 48994066 -68868561 + AluSx SINE Alu 1 298 -14 314 179 0 28 chr9 48994275 48994381 -68868246 + T-rich Low_complexity Low_complexity 1 103 0 811 276 43 90 chr9 48995553 48995716 -68866911 + L2 LINE L2 2798 2967 -346 2248 120 0 0 chr9 48995716 48996024 -68866603 - AluSg SINE Alu -2 308 1 811 276 43 90 chr9 48996024 48996225 -68866402 + L2 LINE L2 2967 3126 -187 2358 97 3 0 chr9 48996225 48996535 -68866092 - AluSx SINE Alu -1 311 1 811 276 43 90 chr9 48996535 48996715 -68865912 + L2 LINE L2 3126 3313 0 1727 181 7 3 chr9 48996963 48997266 -68865361 - AluJb SINE Alu -7 305 2 2214 116 0 0 chr9 48998354 48998646 -68863981 + AluSx SINE Alu 1 292 -20 1081 178 15 182 chr9 48998692 48999122 -68863505 - MER47B DNA MER2_type 0 418 1 2366 68 0 43 chr9 48999577 48999900 -68862727 + AluY SINE Alu 1 309 -2 2087 123 0 26 chr9 48999975 49000285 -68862342 - AluSx SINE Alu -10 302 1 1540 199 49 58 chr9 49000396 49000468 -68862159 - MSTC LTR MaLR 0 428 357 1834 152 0 7 chr9 49000468 49000745 -68861882 + AluSx SINE Alu 1 275 -37 1540 199 49 58 chr9 49000745 49001104 -68861523 - MSTC LTR MaLR -71 357 1 305 342 58 17 chr9 49001373 49001573 -68861054 - MIR SINE MIR -56 206 2 1976 102 0 0 chr9 49001881 49002136 -68860491 - AluSg1 SINE Alu -17 292 38 272 322 70 0 chr9 49002144 49002259 -68860368 + HAL1 LINE L1 1 123 -2384 2481 71 3 0 chr9 49002332 49002642 -68859985 + AluY SINE Alu 1 311 0 243 259 35 35 chr9 49002779 49002864 -68859763 + HAL1 LINE L1 1205 1289 -1218 1739 112 47 93 chr9 49002910 49003232 -68859395 + AluSx SINE Alu 1 307 -5 1064 175 0 0 chr9 49003234 49003400 -68859227 + AluSc SINE Alu 134 299 -10 285 191 155 12 chr9 49003455 49003539 -68859088 + HAL1 LINE L1 1660 1755 -752 1785 234 46 59 chr9 49003568 49004114 -68858513 + MER77 LTR ERV1 60 598 -7 241 244 0 0 chr9 49004140 49004185 -68858442 - AluJo SINE Alu -7 295 251 1182 140 12 0 chr9 49004186 49004357 -68858270 - AluJo SINE Alu -139 173 1 257 207 124 33 chr9 49004906 49005027 -68857600 + HAL1 LINE L1 2032 2163 -344 272 297 27 68 chr9 49005034 49005253 -68857374 + HAL1b LINE L1 712 921 -427 323 323 44 48 chr9 49005293 49005544 -68857083 + L1ME3 LINE L1 4914 5163 -983 836 112 1 3 chr9 49005557 49005695 -68856932 + L1PA8A LINE L1 5990 6126 -5 * 2300 245 40 35 chr9 49005687 49006448 -68856179 + L1ME3 LINE L1 5186 5950 -212 21 36 0 0 chr9 49006993 49007021 -68855606 + AT_rich Low_complexity Low_complexity 1 28 0 2439 48 7 0 chr9 49007499 49007793 -68854834 + AluSq SINE Alu 3 298 -15 207 0 0 0 chr9 49007873 49007896 -68854731 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2055 74 41 0 chr9 49007898 49008169 -68854458 - AluY SINE Alu -29 282 1 222 276 0 17 chr9 49009942 49010000 -68852627 + MIR SINE MIR 91 147 -115 215 0 67 0 chr9 49010423 49010453 -68852174 + (TAAAAA)n Simple_repeat Simple_repeat 2 33 0 326 349 87 61 chr9 49010572 49010631 -68851996 - L2 LINE L2 -27 3245 3189 2186 123 0 0 chr9 49010631 49010923 -68851704 + AluSx SINE Alu 1 292 -20 326 349 87 61 chr9 49010923 49011175 -68851452 - L2 LINE L2 -83 3189 2926 652 301 19 19 chr9 49011231 49011444 -68851183 + MIR SINE MIR 38 250 -12 194 204 143 0 chr9 49011513 49011562 -68851065 + MIR SINE MIR 129 184 -78 5752 99 47 2 chr9 49011786 49013102 -68849525 + L1PA11 LINE L1 4810 6164 -10 2064 89 0 11 chr9 49013104 49013375 -68849252 + AluSg SINE Alu 38 305 -5 235 356 11 11 chr9 49013413 49013500 -68849127 + L2 LINE L2 3223 3309 -4 198 387 71 51 chr9 49014128 49014381 -68848246 - L3b LINE CR1 -32 1551 1294 2154 117 0 10 chr9 49014708 49015006 -68847621 - AluSg SINE Alu -15 295 1 2215 97 3 19 chr9 49015962 49016273 -68846354 - AluSx SINE Alu -6 306 1 507 209 0 0 chr9 49016428 49016543 -68846084 + (TA)n Simple_repeat Simple_repeat 2 116 0 280 247 33 20 chr9 49017377 49017527 -68845100 + (TA)n Simple_repeat Simple_repeat 2 153 0 334 322 54 13 chr9 49018374 49018523 -68844104 + MIR3 SINE MIR 18 172 -36 511 227 98 13 chr9 49018708 49018886 -68843741 + MER33 DNA MER1_type 1 196 -103 697 151 0 0 chr9 49018902 49019008 -68843619 - AluSg/x SINE Alu -14 298 193 226 286 0 0 chr9 49119373 49119429 -68743198 + GA-rich Low_complexity Low_complexity 1 56 0 2109 137 0 0 chr9 49119653 49119946 -68742681 + AluSx SINE Alu 1 293 -19 932 71 0 0 chr9 49119950 49120063 -68742564 + AluSp SINE Alu 1 113 -200 354 254 51 51 chr9 49120542 49120680 -68741947 + LTR16C LTR ERVL 345 482 -9 292 305 94 16 chr9 49120939 49120992 -68741635 + L2 LINE L2 3176 3223 -90 228 35 0 0 chr9 49120992 49121021 -68741606 + (TTG)n Simple_repeat Simple_repeat 2 30 0 292 305 94 16 chr9 49121021 49121095 -68741532 + L2 LINE L2 3223 3313 0 456 216 0 0 chr9 49121513 49121661 -68740966 + (TG)n Simple_repeat Simple_repeat 2 149 0 234 184 0 0 chr9 49122380 49122418 -68740209 + L2 LINE L2 3214 3251 -21 242 290 224 9 chr9 49122555 49122662 -68739965 - L2 LINE L2 -4 3268 3139 651 189 256 5 chr9 49122713 49122904 -68739723 - MIR SINE MIR -15 247 9 234 241 0 76 chr9 49123534 49123613 -68739014 + MIR SINE MIR 111 183 -79 1305 179 7 70 chr9 49124377 49124650 -68737977 - AluJb SINE Alu -16 296 41 363 154 44 121 chr9 49124650 49124741 -68737886 - MIR SINE MIR -65 143 60 349 137 0 0 chr9 49124957 49125008 -68737619 - Alu SINE Alu -8 294 244 453 260 24 8 chr9 49125119 49125246 -68737381 + MIR SINE MIR 21 149 -113 337 267 47 0 chr9 49125392 49125478 -68737149 - L1MC4 LINE L1 -1339 6703 6614 2050 128 3 0 chr9 49125479 49125767 -68736860 - AluSx SINE Alu -23 289 1 275 307 15 66 chr9 49126044 49126181 -68736446 - L2 LINE L2 -21 3292 3163 507 187 113 20 chr9 49126332 49126482 -68736145 - L1MA10 LINE L1 -8 6326 6163 2812 213 57 8 chr9 49126497 49127747 -68734880 - L1ME1 LINE L1 -198 5968 4658 7927 126 23 19 chr9 49127749 49128990 -68733637 + HSMAR2 DNA Mariner 11 1256 -46 907 244 24 20 chr9 49129117 49129371 -68733256 - MER34 LTR ERV1 -277 265 11 2239 127 0 0 chr9 49129637 49129945 -68732682 - AluSx SINE Alu -4 308 1 265 262 85 35 chr9 49130236 49130377 -68732250 - MLT1K LTR MaLR -66 522 375 1390 123 5 0 chr9 49130453 49130648 -68731979 - AluSg/x SINE Alu -9 303 108 2566 75 0 0 chr9 49130648 49130954 -68731673 - AluSg SINE Alu -4 306 1 539 317 135 36 chr9 49130954 49131288 -68731339 - MLT1I LTR MaLR -42 367 1 219 146 0 0 chr9 49131319 49131360 -68731267 + (A)n Simple_repeat Simple_repeat 1 41 0 200 244 0 0 chr9 49131604 49131645 -68730982 + A-rich Low_complexity Low_complexity 1 41 0 2270 117 0 0 chr9 49133811 49134110 -68728517 - AluSx SINE Alu -13 299 1 1753 108 0 4 chr9 49134380 49134620 -68728007 + AluSq SINE Alu 75 313 0 240 337 0 0 chr9 49134879 49134965 -68727662 - L2 LINE L2 -559 2755 2670 42 57 0 0 chr9 49135466 49135536 -68727091 + AT_rich Low_complexity Low_complexity 1 70 0 899 188 55 22 chr9 49135562 49135743 -68726884 - MER5A DNA MER1_type -2 187 1 286 86 0 0 chr9 49135795 49135830 -68726797 - Tigger4(Zombi) DNA MER2_type 0 2731 2697 716 205 0 0 chr9 49135831 49135948 -68726679 + FLAM_C SINE Alu 1 117 -26 426 20 0 0 chr9 49135948 49135999 -68726628 + (CA)n Simple_repeat Simple_repeat 2 52 0 1258 211 23 50 chr9 49136003 49136140 -68726487 + AluJo SINE Alu 2 141 -171 2113 120 0 3 chr9 49136140 49136466 -68726161 + AluSx SINE Alu 1 325 0 1258 211 23 50 chr9 49136466 49136629 -68725998 + AluJo SINE Alu 141 296 -16 1382 105 0 0 chr9 49136635 49136825 -68725802 - Tigger4(Zombi) DNA MER2_type -19 2712 2523 709 173 31 0 chr9 49136816 49136943 -68725684 - Tigger4(Zombi) DNA MER2_type -2600 131 1 * 447 291 25 13 chr9 49136945 49137103 -68725524 - MIR SINE MIR -55 207 48 2364 114 0 0 chr9 49137145 49137453 -68725174 - AluSx SINE Alu -4 308 1 394 49 33 0 chr9 49138165 49138226 -68724401 + (CA)n Simple_repeat Simple_repeat 2 64 0 258 32 0 0 chr9 49138328 49138359 -68724268 + (TTG)n Simple_repeat Simple_repeat 2 32 0 1763 137 38 0 chr9 49138363 49138626 -68724001 - AluSg SINE Alu -37 273 1 1621 104 5 5 chr9 49138632 49138852 -68723775 - AluSq SINE Alu 0 313 94 518 251 87 38 chr9 49139306 49139489 -68723138 + L2 LINE L2 3118 3309 -4 785 185 20 7 chr9 49139988 49140123 -68722504 - MLT1F LTR MaLR -2 565 429 997 214 107 62 chr9 49140123 49140355 -68722272 - MLT1B LTR MaLR -2 388 137 2134 133 0 0 chr9 49140355 49140655 -68721972 - AluSx SINE Alu -12 300 1 997 214 107 62 chr9 49140655 49140730 -68721897 - MLT1B LTR MaLR -253 137 67 765 181 13 13 chr9 49140722 49140871 -68721756 - MLT1B LTR MaLR -238 152 4 * 978 240 74 79 chr9 49140876 49141280 -68721347 - MLT1F LTR MaLR -135 407 6 737 270 20 15 chr9 49141534 49141730 -68720897 + MIR SINE MIR 7 203 -59 279 173 0 0 chr9 49141730 49141782 -68720845 + (TATG)n Simple_repeat Simple_repeat 2 53 0 258 32 0 0 chr9 49141782 49141813 -68720814 + (GA)n Simple_repeat Simple_repeat 2 32 0 215 313 16 16 chr9 49141873 49141937 -68720690 + L2 LINE L2 3203 3266 -6 2422 71 10 0 chr9 49142118 49142414 -68720213 + AluY SINE Alu 2 300 -11 907 129 8 0 chr9 49142444 49142576 -68720051 + AluJb SINE Alu 1 133 -179 306 200 163 0 chr9 49142836 49142916 -68719711 - MLT1K LTR MaLR -110 478 386 2186 113 14 0 chr9 49143206 49143499 -68719128 + AluSx SINE Alu 3 299 -13 608 192 0 16 chr9 49143821 49144011 -68718616 + CT-rich Low_complexity Low_complexity 1 186 0 2008 135 6 16 chr9 49144036 49144347 -68718280 + AluSx SINE Alu 1 308 -4 271 254 0 0 chr9 49144837 49144896 -68717731 + L2 LINE L2 3255 3313 0 1407 345 25 80 chr9 49145018 49145568 -68717059 - MLT2B1 LTR ERVL 0 520 1 703 221 21 37 chr9 49146710 49146900 -68715727 + LTR33 LTR ERVL 6 192 -329 1541 142 0 13 chr9 49147052 49147284 -68715343 - AluJb SINE Alu -83 229 1 947 267 5 9 chr9 49147295 49147505 -68715122 - MER58A DNA MER1_type -15 209 1 1392 147 33 0 chr9 49147540 49147751 -68714876 + MER20 DNA MER1_type 2 219 0 2204 89 27 0 chr9 49147943 49148236 -68714391 - AluSq SINE Alu -12 301 1 1870 146 7 4 chr9 49149509 49149790 -68712837 - AluSx SINE Alu -30 282 1 756 301 47 8 chr9 49149967 49150203 -68712424 - MIR SINE MIR -5 257 13 243 345 158 14 chr9 49150288 49150427 -68712200 + MIR3 SINE MIR 45 203 -5 1996 141 20 0 chr9 49150557 49150855 -68711772 - AluSx SINE Alu -5 307 4 248 366 21 21 chr9 49150962 49151104 -68711523 - MIR3 SINE MIR -4 204 63 210 254 37 20 chr9 49151215 49151280 -68711347 + MIR SINE MIR 34 102 -106 192 224 45 45 chr9 49151437 49151504 -68711123 + L3 LINE CR1 1351 1417 -160 2167 117 7 7 chr9 49151964 49152272 -68710355 - AluSx SINE Alu -4 308 1 24 0 0 0 chr9 49152429 49152453 -68710174 + AT_rich Low_complexity Low_complexity 1 24 0 622 270 84 0 chr9 49152462 49152699 -68709928 + L1MC4a LINE L1 5664 5920 -1888 434 18 18 0 chr9 49152713 49152768 -68709859 + (TG)n Simple_repeat Simple_repeat 1 56 0 356 273 92 67 chr9 49152798 49152833 -68709794 + L1MC4a LINE L1 6075 6108 -1700 2104 121 24 0 chr9 49152833 49153130 -68709497 - AluSq SINE Alu -6 307 4 356 273 92 67 chr9 49153130 49153376 -68709251 + L1MC4a LINE L1 6108 6363 -1445 946 256 15 59 chr9 49153605 49154028 -68708599 + L1MC5 LINE L1 6497 6920 -888 243 258 0 0 chr9 49154068 49154134 -68708493 + L1ME4a LINE L1 5693 5758 -363 370 262 110 0 chr9 49154288 49154433 -68708194 + L1ME4a LINE L1 5948 6108 -13 34 79 0 0 chr9 49154433 49154509 -68708118 + AT_rich Low_complexity Low_complexity 1 76 0 246 95 0 0 chr9 49154618 49154660 -68707967 + (TTAA)n Simple_repeat Simple_repeat 1 42 0 2201 106 0 0 chr9 49154663 49154945 -68707682 - AluSc SINE Alu -27 282 1 1546 191 10 41 chr9 49155070 49155363 -68707264 - AluJb SINE Alu -28 284 1 368 268 54 24 chr9 49156573 49156778 -68705849 + L1ME LINE L1 5525 5735 -386 678 230 6 18 chr9 49156779 49156944 -68705683 + LTR41 LTR ERVL 2 164 -609 369 243 61 84 chr9 49157218 49157448 -68705179 + LTR41 LTR ERVL 556 795 0 2399 94 0 3 chr9 49157581 49157890 -68704737 + AluSx SINE Alu 1 308 -4 240 35 0 0 chr9 49157960 49157989 -68704638 + (T)n Simple_repeat Simple_repeat 1 29 0 1584 335 58 26 chr9 49158109 49159151 -68703476 - ERVL LTR ERVL -636 5128 4054 519 364 33 9 chr9 49159193 49159528 -68703099 - ERVL LTR ERVL -1778 3986 3644 617 215 108 26 chr9 49159826 49160021 -68702606 + MLT1G LTR MaLR 1 211 -379 1238 201 0 48 chr9 49160021 49160219 -68702408 - MER90 LTR ERV1 0 614 431 2616 59 0 0 chr9 49160219 49160526 -68702101 + AluY SINE Alu 1 307 -4 1238 201 0 48 chr9 49160526 49160595 -68702032 - MER90 LTR ERV1 -183 431 360 632 271 21 0 chr9 49160590 49160797 -68701830 - MER90 LTR ERV1 -361 253 3 * 399 243 141 27 chr9 49160797 49161123 -68701504 + MLT1H LTR MaLR 206 549 0 694 277 72 78 chr9 49161123 49161622 -68701005 - L2 LINE L2 -1008 2306 1811 198 0 0 0 chr9 49161714 49161736 -68700891 + (CACAT)n Simple_repeat Simple_repeat 3 24 0 405 271 120 40 chr9 49163831 49164056 -68698571 - MIR SINE MIR 0 262 20 286 396 139 9 chr9 49164175 49164506 -68698121 - L2 LINE L2 -8 3264 2891 2321 109 0 0 chr9 49164675 49164977 -68697650 - AluSx SINE Alu -10 302 1 23 0 0 0 chr9 49165080 49165103 -68697524 + AT_rich Low_complexity Low_complexity 1 23 0 329 384 76 5 chr9 49165123 49165308 -68697319 + L1ME LINE L1 5479 5676 -445 307 226 10 49 chr9 49165561 49165663 -68696964 + L1ME4a LINE L1 5955 6052 -69 1844 141 12 50 chr9 49165669 49165989 -68696638 - AluSx SINE Alu -4 308 1 22 94 0 0 chr9 49166012 49166076 -68696551 + AT_rich Low_complexity Low_complexity 1 64 0 2484 137 35 28 chr9 49166798 49167221 -68695406 - MSTB LTR MaLR 0 426 1 402 331 62 56 chr9 49167268 49167794 -68694833 + HAL1b LINE L1 98 568 -780 445 250 239 11 chr9 49168293 49168473 -68694154 + MIR SINE MIR 10 230 -32 593 210 138 28 chr9 49168532 49168713 -68693914 - MER21B LTR ERV1 -25 838 638 1343 174 66 127 chr9 49168713 49169461 -68693166 - LTR8A LTR ERV1 0 727 1 1421 201 136 104 chr9 49169464 49169786 -68692841 - MER21B LTR ERV1 -226 637 327 2106 153 13 0 chr9 49169786 49170093 -68692534 + AluSx SINE Alu 1 311 -1 1421 201 136 104 chr9 49170093 49170387 -68692240 - MER21B LTR ERV1 -536 327 1 2061 117 0 36 chr9 49171228 49171536 -68691091 + AluSx SINE Alu 3 299 -13 722 209 35 83 chr9 49171596 49171826 -68690801 + MER20 DNA MER1_type 1 219 0 386 332 37 82 chr9 49173105 49173457 -68689170 + L2 LINE L2 2421 2756 -558 250 265 0 48 chr9 49173537 49173620 -68689007 - MIR SINE MIR -90 118 40 294 29 0 0 chr9 49173981 49174016 -68688611 - U2 snRNA snRNA -153 35 1 243 273 18 0 chr9 49174873 49174928 -68687699 + L2 LINE L2 3210 3265 -7 264 262 79 40 chr9 49175015 49175141 -68687486 - MER94 DNA DNA 0 134 4 2490 71 3 0 chr9 49175432 49175742 -68686885 - AluY SINE Alu 0 311 1 2060 157 3 0 chr9 49175898 49176204 -68686423 - AluSx SINE Alu -5 307 1 588 293 43 6 chr9 49176321 49176485 -68686142 - MER45A DNA AcHobo -7 171 2 2282 101 0 3 chr9 49176622 49176928 -68685699 - AluSg SINE Alu -5 305 1 30556 110 12 64 chr9 49177416 49183183 -68679444 - L1P3 LINE L1 -680 5474 12 12390 131 186 3 chr9 49183193 49183327 -68679300 - L1PBa LINE L1 -3935 2928 2820 182 36 0 36 chr9 49183327 49183355 -68679272 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 12390 131 186 3 chr9 49183355 49185693 -68676934 - L1PBa LINE L1 -4043 2820 3 422 303 53 0 chr9 49185918 49186050 -68676577 + MIR SINE MIR 92 230 -32 384 302 87 0 chr9 49186059 49186185 -68676442 - MIR SINE MIR -74 188 52 25 0 0 0 chr9 49186787 49186812 -68675815 + AT_rich Low_complexity Low_complexity 1 25 0 442 175 0 0 chr9 49186937 49187017 -68675610 - MER45A DNA AcHobo 0 178 99 1330 205 121 44 chr9 49187033 49187558 -68675069 + MER34B LTR ERV1 6 560 -5 394 269 21 0 chr9 49187562 49187655 -68674972 - MER45A DNA AcHobo -83 95 1 586 310 100 9 chr9 49188032 49188261 -68674366 - MIR SINE MIR -10 252 3 196 373 82 0 chr9 49188538 49188648 -68673979 + L2 LINE L2 3153 3271 -1 548 117 0 0 chr9 49188760 49188837 -68673790 + MER63 DNA MER1_type 675 751 -311 272 254 0 56 chr9 49188845 49188916 -68673711 + MER63 DNA MER1_type 987 1053 -8 1635 201 63 24 chr9 49190119 49190498 -68672129 - MSTD LTR MaLR 0 396 3 453 81 0 0 chr9 49191281 49191343 -68671284 + (TA)n Simple_repeat Simple_repeat 1 62 0 2418 97 19 56 chr9 49191357 49191667 -68670960 - MLT2A1 LTR ERVL -45 399 106 2482 48 0 0 chr9 49191667 49191957 -68670670 - AluY SINE Alu -21 290 1 2418 97 19 56 chr9 49191957 49192060 -68670567 - MLT2A1 LTR ERVL -338 106 1 256 235 25 12 chr9 49192195 49192304 -68670323 + (TATATG)n Simple_repeat Simple_repeat 1 110 0 2011 162 71 63 chr9 49193984 49194569 -68668058 - MER34B LTR ERV1 -20 565 10 1667 157 27 21 chr9 49195653 49195984 -68666643 - MER39 LTR ERV1 0 707 375 1641 181 24 6 chr9 49196100 49196432 -68666195 - MER39 LTR ERV1 -369 338 1 354 238 48 0 chr9 49196447 49196531 -68666096 - MER5B DNA MER1_type -8 170 83 2996 110 50 15 chr9 49196532 49196997 -68665630 - MER1A DNA MER1_type -1 528 48 299 337 67 90 chr9 49197128 49197484 -68665143 - L2 LINE L2 -1 3271 2924 188 368 39 32 chr9 49197692 49197847 -68664780 + L2 LINE L2 2881 3036 -236 21 36 0 0 chr9 49198022 49198050 -68664577 + AT_rich Low_complexity Low_complexity 1 28 0 2048 140 0 10 chr9 49198249 49198557 -68664070 + AluSx SINE Alu 1 305 -7 239 234 168 66 chr9 49198566 49198703 -68663924 - MIR SINE MIR -1 261 111 557 259 96 0 chr9 49198718 49198884 -68663743 + MIR SINE MIR 64 245 -17 423 276 19 0 chr9 49198907 49199012 -68663615 - MIR SINE MIR -106 156 50 201 132 0 0 chr9 49199159 49199197 -68663430 + (GA)n Simple_repeat Simple_repeat 1 38 0 325 315 68 30 chr9 49199754 49200165 -68662462 - L1ME LINE L1 -448 5722 5293 583 143 0 0 chr9 49200168 49200266 -68662361 - AluSg/x SINE Alu 0 309 212 248 271 34 57 chr9 49200267 49200409 -68662218 - L1M4 LINE L1 -770 5376 5241 2332 110 10 0 chr9 49200409 49200717 -68661910 + AluSx SINE Alu 1 311 -1 248 271 34 57 chr9 49200717 49200836 -68661791 - L1M4 LINE L1 -905 5241 5121 236 250 61 27 chr9 49203593 49203741 -68658886 - L1ME4a LINE L1 -2 6119 5967 199 176 0 0 chr9 49203905 49203939 -68658688 - L2 LINE L2 -21 3292 3259 2285 112 16 19 chr9 49204041 49204417 -68658210 - L1PA14 LINE L1 0 6161 5787 368 222 44 11 chr9 49204417 49204507 -68658120 + L1MC4 LINE L1 6611 6703 -1339 542 102 11 11 chr9 49204516 49204604 -68658023 - L1PA14 LINE L1 -287 5874 5787 357 116 0 35 chr9 49204606 49204692 -68657935 + (TA)n Simple_repeat Simple_repeat 2 84 0 306 328 16 16 chr9 49205164 49205289 -68657338 - L2 LINE L2 -769 2545 2421 225 0 0 0 chr9 49205290 49205315 -68657312 + (TTTTTA)n Simple_repeat Simple_repeat 1 25 0 2093 94 14 0 chr9 49205317 49205604 -68657023 - L1PB1 LINE L1 -7 6144 5854 977 108 0 0 chr9 49205604 49205752 -68656875 - L1PB1 LINE L1 -646 5505 5358 328 333 58 42 chr9 49205840 49206080 -68656547 - L2 LINE L2 -1038 2276 2033 22 0 0 0 chr9 49206586 49206608 -68656019 + AT_rich Low_complexity Low_complexity 1 22 0 504 197 16 31 chr9 49206963 49207090 -68655537 + L1ME1 LINE L1 5747 5871 -295 266 260 130 14 chr9 49207145 49207162 -68655465 - L1MA10 LINE L1 -3 6331 6315 2566 217 63 52 chr9 49207162 49208513 -68654114 - L1ME1 LINE L1 -14 6221 4887 2210 117 19 24 chr9 49208513 49208889 -68653738 + THE1C LTR MaLR 1 374 -1 2566 217 63 52 chr9 49208889 49209002 -68653625 - L1ME1 LINE L1 -1348 4887 1298 1766 88 0 0 chr9 49209072 49209300 -68653327 + AluY SINE Alu 66 293 -18 2503 265 75 49 chr9 49209877 49211005 -68651622 - L1ME1 LINE L1 -5218 1178 22 220 359 86 8 chr9 49211401 49211635 -68650992 - L3b LINE CR1 -148 1435 1184 267 116 0 0 chr9 49211852 49211895 -68650732 + Alu SINE Alu 261 303 -5 196 245 20 0 chr9 49211920 49211969 -68650658 + MIR SINE MIR 102 151 -111 1805 158 4 0 chr9 49212899 49213177 -68649450 + AluSx SINE Alu 1 279 -33 1911 94 4 8 chr9 49214454 49214719 -68647908 + AluY SINE Alu 40 303 -8 2106 124 3 34 chr9 49215721 49216043 -68646584 - AluSx SINE Alu 0 312 1 234 171 0 0 chr9 49216451 49216486 -68646141 - Tigger3b DNA MER2_type 0 1232 1198 2430 137 123 106 chr9 49216486 49217201 -68645426 - LTR8A LTR ERV1 0 727 1 4395 138 52 6 chr9 49217201 49217881 -68644746 - Tigger3b DNA MER2_type -2204 824 102 4187 156 82 7 chr9 49217881 49218649 -68643978 + LTR1B LTR ERV1 1 826 0 4395 138 52 6 chr9 49218649 49218756 -68643871 - Tigger3b DNA MER2_type -2926 102 1 743 138 0 51 chr9 49219681 49219819 -68642808 + FLAM_C SINE Alu 1 131 -2 412 201 83 162 chr9 49220151 49220314 -68642313 - L2 LINE L2 0 3313 3172 1671 169 27 3 chr9 49220314 49220434 -68642193 + AluJb SINE Alu 1 117 -195 351 0 0 0 chr9 49220434 49220473 -68642154 + (CAAAA)n Simple_repeat Simple_repeat 1 39 0 1671 169 27 3 chr9 49220473 49220648 -68641979 + AluJb SINE Alu 117 303 -9 412 201 83 162 chr9 49220648 49220713 -68641914 - L2 LINE L2 -141 3172 3103 389 332 136 42 chr9 49220781 49221142 -68641485 - HAL1 LINE L1 -2108 399 5 379 152 51 13 chr9 49221348 49221427 -68641200 - L1MCa LINE L1 -6303 123 42 394 248 74 46 chr9 49221734 49221936 -68640691 - MIR SINE MIR -54 208 3 204 315 0 43 chr9 49221974 49222066 -68640561 + MIR SINE MIR 73 160 -102 234 224 149 56 chr9 49222560 49222573 -68640054 - L1ME4a LINE L1 -15 6106 6096 2149 107 0 13 chr9 49222573 49222871 -68639756 + AluSx SINE Alu 1 294 -18 234 224 149 56 chr9 49222871 49223125 -68639502 - L1ME4a LINE L1 -25 6096 5814 3589 251 50 14 chr9 49223312 49224372 -68638255 + L1MEc LINE L1 35 1132 -5264 511 237 9 0 chr9 49224367 49224481 -68638146 + L1MEc LINE L1 1918 2032 -4364 * 1221 217 56 65 chr9 49224502 49225007 -68637620 - MER39 LTR ERV1 -2 705 10 403 256 12 19 chr9 49225015 49225175 -68637452 + L1MEc LINE L1 2056 2214 -4182 415 133 0 122 chr9 49225176 49225266 -68637361 - MER2 DNA MER2_type -266 79 1 590 231 3 30 chr9 49225945 49226145 -68636482 + L1M1 LINE L1 3527 3720 -3845 313 275 0 38 chr9 49226164 49226295 -68636332 + L1M1 LINE L1 3948 4073 -3492 448 110 207 0 chr9 49226295 49226377 -68636250 + AluJ/FLAM SINE Alu 1 99 -213 333 0 0 0 chr9 49226377 49226414 -68636213 + (CA)n Simple_repeat Simple_repeat 1 37 0 1973 246 31 38 chr9 49226437 49227535 -68635092 + L1M1 LINE L1 4075 5124 -2441 1472 227 25 37 chr9 49227555 49227991 -68634636 + L1M1 LINE L1 5782 6212 -1353 890 225 6 11 chr9 49228079 49228261 -68634366 + MER5A DNA MER1_type 9 189 0 208 222 0 0 chr9 49228637 49228673 -68633954 + (CA)n Simple_repeat Simple_repeat 1 36 0 411 301 91 64 chr9 49229973 49230192 -68632435 - MIR SINE MIR -16 246 22 201 133 0 0 chr9 49230504 49230534 -68632093 + (TC)n Simple_repeat Simple_repeat 1 30 0 315 0 0 0 chr9 49230681 49230716 -68631911 + (CA)n Simple_repeat Simple_repeat 2 36 0 1296 196 113 31 chr9 49230716 49231078 -68631549 - MLT2B1 LTR ERVL -67 397 1 204 339 0 0 chr9 49231101 49231163 -68631464 + L2 LINE L2 3246 3307 -6 319 267 73 79 chr9 49231669 49231834 -68630793 + MIR3 SINE MIR 3 166 -42 482 339 16 32 chr9 49231940 49232129 -68630498 + MIR SINE MIR 11 196 -66 1526 205 85 15 chr9 49233019 49233360 -68629267 - MLT1A1 LTR MaLR 0 365 1 22 35 0 0 chr9 49235423 49235452 -68627175 + AT_rich Low_complexity Low_complexity 1 29 0 2018 139 103 25 chr9 49236287 49236683 -68625944 - MSTA LTR MaLR 0 428 2 369 0 0 0 chr9 49237285 49237326 -68625301 + (TA)n Simple_repeat Simple_repeat 2 42 0 262 298 12 6 chr9 49237427 49237524 -68625103 + CT-rich Low_complexity Low_complexity 1 97 0 1621 269 116 17 chr9 49237779 49238410 -68624217 + L2 LINE L2 1801 2493 -821 2165 72 0 0 chr9 49238649 49238913 -68623714 - AluY SINE Alu -3 308 45 2227 113 0 0 chr9 49238914 49239215 -68623412 - AluSx SINE Alu -11 301 1 2624 137 45 11 chr9 49242496 49242941 -68619686 - MER39B LTR ERV1 0 653 194 3075 241 81 41 chr9 49242941 49245073 -68617554 - L1M4 LINE L1 -3448 2934 795 1468 301 84 48 chr9 49245231 49246098 -68616529 - L1M3d LINE L1 -5219 672 4 2039 154 0 3 chr9 49246390 49246688 -68615939 + AluSx SINE Alu 1 297 -15 1149 232 142 8 chr9 49246797 49247164 -68615463 - LTR37A LTR ERV1 -5 421 6 24 85 0 0 chr9 49248408 49248467 -68614160 + AT_rich Low_complexity Low_complexity 1 59 0 512 248 103 14 chr9 49248658 49248803 -68613824 + MER58C DNA MER1_type 58 215 0 999 228 176 15 chr9 49252068 49252672 -68609955 - LTR50 LTR ERVL -2 793 6 2311 102 0 0 chr9 49253231 49253534 -68609093 + AluSx SINE Alu 4 306 -6 2261 91 14 3 chr9 49253538 49253835 -68608792 + AluSq SINE Alu 14 313 0 346 183 9 35 chr9 49254267 49254382 -68608245 + (TA)n Simple_repeat Simple_repeat 2 113 0 209 237 0 17 chr9 49254409 49254468 -68608159 + (TA)n Simple_repeat Simple_repeat 2 59 0 267 315 47 63 chr9 49255182 49255309 -68607318 + MIR SINE MIR 22 146 -62 433 301 114 11 chr9 49255902 49256078 -68606549 + MIR SINE MIR 40 233 -29 252 137 39 0 chr9 49256581 49256632 -68605995 - L1MB3 LINE L1 0 6183 6131 28 29 0 0 chr9 49256651 49256686 -68605941 + AT_rich Low_complexity Low_complexity 1 35 0 1761 176 0 3 chr9 49256687 49256982 -68605645 - AluJo SINE Alu -18 294 1 417 333 85 20 chr9 49257003 49257204 -68605423 + MER102b DNA MER1_type 126 339 -2 769 87 0 0 chr9 49258280 49258383 -68604244 + AluY SINE Alu 199 301 -10 2215 114 0 0 chr9 49258400 49258698 -68603929 + AluSx SINE Alu 6 303 -9 2275 88 14 3 chr9 49258702 49258999 -68603628 + AluSq SINE Alu 14 313 0 196 147 13 53 chr9 49259431 49259506 -68603121 + (TA)n Simple_repeat Simple_repeat 2 73 0 209 237 0 17 chr9 49259533 49259592 -68603035 + (TA)n Simple_repeat Simple_repeat 2 59 0 216 315 47 63 chr9 49260304 49260431 -68602196 + MIR SINE MIR 22 146 -62 359 301 114 11 chr9 49261024 49261200 -68601427 + MIR SINE MIR 40 233 -29 265 137 39 0 chr9 49261703 49261754 -68600873 - L1MB3 LINE L1 0 6183 6131 431 326 101 28 chr9 49261772 49261809 -68600818 + MER102b DNA MER1_type 54 87 -1341 1812 173 0 3 chr9 49261809 49262104 -68600523 - AluJo SINE Alu -18 294 1 431 326 101 28 chr9 49262104 49262326 -68600301 + MER102b DNA MER1_type 87 339 -2 10827 195 18 43 chr9 49265053 49265067 -68597560 - L1PB1 LINE L1 0 7589 7576 304 102 0 0 chr9 49265067 49265116 -68597511 - L1PB1 LINE L1 -1 6150 6102 10827 195 18 43 chr9 49265116 49265442 -68597185 - L1PB1 LINE L1 -13 7576 7243 2358 116 0 0 chr9 49265442 49265752 -68596875 - AluSx SINE Alu -2 310 1 10827 195 18 43 chr9 49265752 49267697 -68594930 - L1PB1 LINE L1 -346 7243 5373 228 247 26 13 chr9 49267697 49267774 -68594853 - LTR9 LTR ERV1 -82 530 453 10827 195 18 43 chr9 49267774 49269462 -68593165 - L1PB1 LINE L1 -2216 5373 3644 3155 77 42 7 chr9 49269464 49269823 -68592804 - L1PA7 LINE L1 -1 6153 5775 2427 79 0 7 chr9 49269823 49270304 -68592323 - AluY SINE Alu 0 311 1 3155 77 42 7 chr9 49270304 49270373 -68592254 - L1PA7 LINE L1 -379 5775 5710 3125 157 0 11 chr9 49270473 49270945 -68591682 - L1PB1 LINE L1 -7114 467 1 207 0 0 0 chr9 49270968 49270991 -68591636 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 242 296 80 16 chr9 49271124 49271249 -68591378 + MIR SINE MIR 130 262 0 203 355 116 37 chr9 49272183 49272451 -68590176 - L2 LINE L2 -1043 2271 1983 362 275 70 21 chr9 49273229 49273371 -68589256 + MLT1K LTR MaLR 436 584 -4 413 265 61 7 chr9 49274502 49274649 -68587978 - MIR SINE MIR -47 215 61 246 330 62 11 chr9 49275067 49275243 -68587384 + L2 LINE L2 2849 3033 -239 2340 103 0 31 chr9 49275243 49275563 -68587064 - AluSx SINE Alu -2 310 1 394 290 73 50 chr9 49275792 49276051 -68586576 + LTR16C LTR ERVL 210 474 -17 582 113 0 0 chr9 49276077 49276157 -68586470 + MADE1 DNA Mariner 1 80 0 354 150 50 0 chr9 49276197 49276294 -68586333 + L1M4 LINE L1 5662 5766 -408 535 277 33 5 chr9 49276675 49276859 -68585768 + MIR SINE MIR 69 257 -5 217 295 82 56 chr9 49276976 49277244 -68585383 + L3 LINE CR1 1178 1452 -125 207 146 0 0 chr9 49277833 49277874 -68584753 + (TG)n Simple_repeat Simple_repeat 1 41 0 200 319 14 0 chr9 49279177 49279249 -68583378 - MER5A DNA MER1_type -108 81 9 294 220 17 0 chr9 49279862 49279921 -68582706 + L2 LINE L2 3238 3297 -16 348 294 63 7 chr9 49280066 49280209 -68582418 + MIR SINE MIR 33 183 -79 345 224 152 24 chr9 49280494 49280619 -68582008 + MIR SINE MIR 2 142 -120 458 347 38 25 chr9 49281239 49281553 -68581074 - L2 LINE L2 -337 2977 2660 249 196 0 0 chr9 49283591 49283642 -68578985 + (TA)n Simple_repeat Simple_repeat 1 51 0 1764 113 70 3 chr9 49284074 49284358 -68578269 + MER39B LTR ERV1 351 653 0 182 36 0 36 chr9 49284513 49284541 -68578086 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 394 159 0 0 chr9 49284597 49284660 -68577967 + MLT1C LTR MaLR 405 467 0 2309 93 3 31 chr9 49284784 49285105 -68577522 - AluSq SINE Alu -1 312 1 2494 128 43 31 chr9 49285578 49285902 -68576725 - MSTC LTR MaLR -2 426 94 2039 119 3 51 chr9 49285902 49286214 -68576413 - AluSq SINE Alu -14 299 3 2494 128 43 31 chr9 49286214 49286310 -68576317 - MSTC LTR MaLR -334 94 1 26 0 0 0 chr9 49286366 49286392 -68576235 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr9 49286620 49286642 -68575985 + AT_rich Low_complexity Low_complexity 1 22 0 207 209 47 0 chr9 49287524 49287567 -68575060 - L2 LINE L2 0 3272 3228 942 287 34 42 chr9 49288742 49289248 -68573379 + L1ME3A LINE L1 5428 5929 -241 1295 201 111 10 chr9 49289378 49289666 -68572961 + MSTD LTR MaLR 70 386 -10 186 103 0 0 chr9 49289731 49289760 -68572867 + L2 LINE L2 2726 2754 -560 564 212 175 69 chr9 49289893 49290110 -68572517 - MIR SINE MIR -19 243 4 2423 88 0 0 chr9 49290154 49290448 -68572179 - AluSx SINE Alu -18 294 1 229 297 76 87 chr9 49290453 49290888 -68571739 + L2 LINE L2 2824 3253 -19 253 309 21 10 chr9 49291043 49291140 -68571487 + L2 LINE L2 3172 3269 -3 208 260 20 0 chr9 49292913 49292963 -68569664 + L2 LINE L2 3262 3312 -1 2402 58 0 3 chr9 49292982 49293273 -68569354 + AluY SINE Alu 22 311 0 5334 72 13 1 chr9 49293618 49294299 -68568328 + Harlequin LTR ERV1 6207 6895 -1 2036 176 68 34 chr9 49294319 49294763 -68567864 + LTR2B LTR ERV1 32 490 0 562 291 160 1 chr9 49294776 49295070 -68567557 - L2 LINE L2 -222 3091 2753 426 213 92 40 chr9 49295402 49295576 -68567051 - L1ME4a LINE L1 0 6121 5939 989 220 16 16 chr9 49295940 49296190 -68566437 + MER96B DNA MER1_type? 1 250 -167 208 240 20 0 chr9 49296192 49296242 -68566385 + MER5B DNA MER1_type 80 130 -48 229 312 108 32 chr9 49296808 49296965 -68565662 + MIR SINE MIR 34 202 -60 341 230 14 0 chr9 49297008 49297082 -68565545 - MER103 DNA DNA -39 127 53 574 238 95 69 chr9 49298158 49298389 -68564238 - MLT1H LTR MaLR 0 549 313 298 261 60 45 chr9 49298977 49299111 -68563516 + MIR SINE MIR 115 250 -12 3767 166 70 55 chr9 49299870 49300713 -68561914 - L1MB7 LINE L1 0 6184 5322 2359 94 23 7 chr9 49300713 49301020 -68561607 - AluSx SINE Alu 0 312 1 3767 166 70 55 chr9 49301020 49301128 -68561499 - L1MB7 LINE L1 -862 5322 5217 314 228 148 10 chr9 49301246 49301347 -68561280 - MIR SINE MIR -37 225 111 308 322 25 0 chr9 49301738 49301859 -68560768 + L1ME LINE L1 5610 5733 -437 1859 137 163 39 chr9 49302138 49302361 -68560266 - MSTA LTR MaLR 0 428 234 2256 138 0 0 chr9 49302361 49302672 -68559955 - AluSx SINE Alu -1 311 1 1859 137 163 39 chr9 49302672 49302829 -68559798 - MSTA LTR MaLR -194 234 1 26 30 0 0 chr9 49302872 49302905 -68559722 + AT_rich Low_complexity Low_complexity 1 33 0 2015 143 3 0 chr9 49302950 49303258 -68559369 - AluSx SINE Alu -3 309 1 570 238 65 6 chr9 49303354 49303522 -68559105 - MIR SINE MIR -3 259 82 479 242 163 0 chr9 49303985 49304138 -68558489 + MIR SINE MIR 34 211 -51 201 273 18 0 chr9 49304171 49304226 -68558401 + MIR SINE MIR 178 233 -29 375 322 107 0 chr9 49304254 49304403 -68558224 - MIR SINE MIR -65 197 33 2493 55 0 0 chr9 49304512 49304802 -68557825 + AluY SINE Alu 1 290 -21 2131 95 26 3 chr9 49304808 49305112 -68557515 + MLT2A1 LTR ERVL 89 399 -45 243 152 0 0 chr9 49305115 49305161 -68557466 - LTR66 LTR ERVL -171 439 394 243 152 0 0 chr9 49305121 49305167 -68557460 + LTR66 LTR ERVL 394 439 -171 9761 206 17 25 chr9 49305977 49306426 -68556201 - L1PA13 LINE L1 -930 5867 5416 2274 194 26 76 chr9 49306426 49307008 -68555619 + MLT2B3 LTR ERVL 1 553 -1 9761 206 17 25 chr9 49307008 49308763 -68553864 - L1PA13 LINE L1 -1381 5416 3681 5169 223 27 11 chr9 49308876 49310789 -68551838 - L1PA13 LINE L1 -3604 3193 1286 1880 288 46 30 chr9 49310803 49311411 -68551216 - L1PA13 LINE L1 -6033 754 137 311 302 7 58 chr9 49312291 49312430 -68550197 + MIR SINE MIR 52 183 -79 286 301 166 0 chr9 49312531 49312694 -68549933 + MIR SINE MIR 73 262 0 2581 159 12 5 chr9 49313012 49313433 -68549194 + MSTB1 LTR MaLR 9 432 0 241 299 15 0 chr9 49313806 49313873 -68548754 + GA-rich Low_complexity Low_complexity 1 68 0 504 236 66 0 chr9 49313882 49313988 -68548639 + MER81 DNA DNA 2 114 0 956 174 137 34 chr9 49314559 49314837 -68547790 + MER33 DNA MER1_type 1 299 -25 692 262 60 0 chr9 49315896 49316064 -68546563 - MIR SINE MIR -83 179 2 237 33 0 0 chr9 49316501 49316531 -68546096 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 23 0 0 0 chr9 49316642 49316665 -68545962 + AT_rich Low_complexity Low_complexity 1 23 0 3860 42 2 0 chr9 49316669 49317102 -68545525 - L1PA7 LINE L1 -11 6143 5710 17025 46 59 6 chr9 49317649 49319832 -68542795 + L1P LINE L1 238 2535 -3611 10135 153 5 2 chr9 49319818 49321485 -68541142 + L1P LINE L1 3504 5174 -972 * 254 253 263 0 chr9 49321952 49322047 -68540580 - MIR SINE MIR -94 168 49 485 317 42 88 chr9 49322217 49322602 -68540025 - L2 LINE L2 -35 3237 2871 261 0 0 0 chr9 49322855 49322884 -68539743 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 206 347 125 34 chr9 49323022 49323319 -68539308 + L2 LINE L2 2268 2591 -723 2243 107 10 0 chr9 49323426 49323735 -68538892 + AluSq SINE Alu 1 312 -1 1840 178 0 13 chr9 49323831 49324145 -68538482 + AluJo SINE Alu 1 310 -2 252 86 0 0 chr9 49324645 49324680 -68537947 + (A)n Simple_repeat Simple_repeat 1 35 0 189 314 114 29 chr9 49324963 49325103 -68537524 - L3 LINE CR1 -466 1111 960 503 299 70 0 chr9 49325109 49325310 -68537317 + MIR SINE MIR 13 227 -35 386 239 144 45 chr9 49327034 49327224 -68535403 + MIR SINE MIR 3 210 -52 722 260 232 22 chr9 49327685 49328195 -68534432 - L2 LINE L2 -12 3301 2694 2641 30 0 3 chr9 49328218 49328517 -68534110 + AluY SINE Alu 2 299 -12 282 221 65 0 chr9 49328855 49328932 -68533695 - HAL1 LINE L1 -865 1642 1561 11027 31 0 2 chr9 49328932 49330942 -68531685 - L1PA2 LINE L1 -1 6154 4147 439 280 67 0 chr9 49331067 49331217 -68531410 - L2 LINE L2 -217 3096 2937 207 300 108 54 chr9 49331610 49331833 -68530794 - L2 LINE L2 -257 3056 2822 265 354 0 0 chr9 49332960 49333056 -68529571 + (CA)n Simple_repeat Simple_repeat 1 96 0 1940 145 3 0 chr9 49333450 49333732 -68528895 - AluJb SINE Alu -11 301 19 192 357 51 31 chr9 49334566 49334664 -68527963 - L2 LINE L2 -49 3223 3124 342 0 0 0 chr9 49335071 49335109 -68527518 + (TG)n Simple_repeat Simple_repeat 2 39 0 222 37 0 0 chr9 49338521 49338548 -68524079 + (TG)n Simple_repeat Simple_repeat 1 27 0 1176 185 19 0 chr9 49338663 49338879 -68523748 - MIR SINE MIR -22 240 21 231 36 0 0 chr9 49338908 49338936 -68523691 + (TG)n Simple_repeat Simple_repeat 1 28 0 1868 73 0 0 chr9 49340172 49340418 -68522209 + Harlequin LTR ERV1 393 638 -6258 2082 178 68 32 chr9 49340418 49340861 -68521766 - LTR2B LTR ERV1 0 490 32 38338 78 18 17 chr9 49340879 49342490 -68520137 - Harlequin LTR ERV1 0 6896 5287 316 26 0 0 chr9 49342490 49342529 -68520098 - AluY SINE Alu -169 132 94 38338 78 18 17 chr9 49342529 49346022 -68516605 - Harlequin LTR ERV1 -1609 5287 1803 1214 189 108 8 chr9 49347329 49347578 -68515049 - AluJo SINE Alu -22 290 17 679 233 160 75 chr9 49348167 49348281 -68514346 + MER20B DNA MER1_type 74 177 -606 1850 144 32 35 chr9 49348281 49348594 -68514033 + AluJo SINE Alu 1 312 0 679 233 160 75 chr9 49348594 49348866 -68513761 + MER20B DNA MER1_type 177 493 -290 1501 132 0 0 chr9 49348878 49349083 -68513544 + AluSx SINE Alu 1 205 -107 184 368 39 32 chr9 49349236 49349391 -68513236 + L2 LINE L2 2881 3036 -236 21 36 0 0 chr9 49349566 49349594 -68513033 + AT_rich Low_complexity Low_complexity 1 28 0 2068 145 0 6 chr9 49349793 49350104 -68512523 + AluSx SINE Alu 1 309 -3 238 356 0 9 chr9 49350342 49350457 -68512170 + L3 LINE CR1 608 721 -856 557 306 25 29 chr9 49350679 49350924 -68511703 + L3 LINE CR1 797 1040 -537 568 188 60 0 chr9 49351091 49351208 -68511419 - MIR SINE MIR 0 262 139 4483 158 20 1 chr9 49351310 49352020 -68510607 - MER44D DNA MER2_type -10 595 1 427 281 33 0 chr9 49352040 49352161 -68510466 - MIR SINE MIR -22 240 116 2167 136 0 3 chr9 49356159 49356461 -68506166 - AluSx SINE Alu -11 301 1 1680 214 28 14 chr9 49356772 49357132 -68505495 - MLT1A1 LTR MaLR 0 365 1 330 205 216 65 chr9 49357985 49358170 -68504457 + MER106B DNA MER1_type 22 1057 -2 352 207 107 58 chr9 49358404 49358525 -68504102 - MIR SINE MIR -6 256 130 924 225 22 13 chr9 49358617 49358844 -68503783 - L1ME3A LINE L1 -214 5956 5728 46 19 0 0 chr9 49359769 49359822 -68502805 + AT_rich Low_complexity Low_complexity 1 53 0 215 79 26 0 chr9 49360371 49360409 -68502218 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2050 118 3 67 chr9 49360699 49360829 -68501798 + AluSx SINE Alu 3 140 -172 2853 13 0 0 chr9 49360829 49361140 -68501487 + AluYa5 SINE Alu 1 311 0 1229 140 5 5 chr9 49361147 49361340 -68501287 + AluSg/x SINE Alu 120 312 0 252 0 0 0 chr9 49361456 49361484 -68501143 + (GGAA)n Simple_repeat Simple_repeat 4 31 0 32 67 0 0 chr9 49361547 49361607 -68501020 + AT_rich Low_complexity Low_complexity 1 60 0 239 291 169 38 chr9 49361901 49362114 -68500513 + L2 LINE L2 3068 3308 -5 376 345 9 0 chr9 49362302 49362412 -68500215 + MIR SINE MIR 42 152 -56 278 315 256 5 chr9 49362898 49363101 -68499526 - MIR SINE MIR -7 255 2 204 255 20 0 chr9 49363630 49363681 -68498946 + MIR3 SINE MIR 147 198 -10 238 246 42 152 chr9 49364023 49364214 -68498413 - L2 LINE L2 -19 3294 3125 2185 95 0 3 chr9 49365331 49365637 -68496990 - AluSg SINE Alu 0 305 1 239 262 0 33 chr9 49365914 49365975 -68496652 + MIR SINE MIR 33 91 -171 201 129 0 0 chr9 49367276 49367307 -68495320 + (GGGTG)n Simple_repeat Simple_repeat 2 32 0 2202 123 7 0 chr9 49367533 49367834 -68494793 + AluSq SINE Alu 1 303 -10 527 317 74 44 chr9 49368330 49368726 -68493901 + L2 LINE L2 2648 3054 -218 247 202 0 60 chr9 49368785 49368869 -68493758 + (TCTCTG)n Simple_repeat Simple_repeat 2 80 0 243 0 0 0 chr9 49370154 49370181 -68492446 + (CA)n Simple_repeat Simple_repeat 2 28 0 182 36 0 36 chr9 49370186 49370214 -68492413 + (GGATG)n Simple_repeat Simple_repeat 1 27 0 198 0 0 0 chr9 49370993 49371015 -68491612 + (T)n Simple_repeat Simple_repeat 1 22 0 212 243 324 0 chr9 49371656 49371730 -68490897 + MER91A DNA MER1_type 18 115 -81 649 164 8 0 chr9 49372720 49372842 -68489785 + GA-rich Low_complexity Low_complexity 2 124 0 224 318 0 0 chr9 49374182 49374245 -68488382 + CT-rich Low_complexity Low_complexity 3 65 0 319 198 117 63 chr9 49375043 49375154 -68487473 + MIR SINE MIR 119 235 -27 2005 165 6 6 chr9 49375154 49375511 -68487116 - MER46B DNA MER2_type 0 236 5 349 250 74 39 chr9 49376656 49376870 -68485757 - LTR50 LTR ERVL -18 684 297 415 248 95 0 chr9 49377012 49377149 -68485478 - LTR50 LTR ERVL -645 150 1 295 372 38 28 chr9 49377153 49377333 -68485294 - MIR SINE MIR -56 206 23 22 0 0 0 chr9 49377895 49377917 -68484710 + AT_rich Low_complexity Low_complexity 1 22 0 184 250 238 0 chr9 49379256 49379336 -68483291 - MIR SINE MIR -21 241 143 853 325 33 19 chr9 49379657 49380017 -68482610 - LTR16B LTR ERVL -8 456 92 198 0 0 0 chr9 49380792 49380814 -68481813 + (T)n Simple_repeat Simple_repeat 1 22 0 271 326 134 64 chr9 49380984 49381657 -68480970 - L2 LINE L2 -1 3312 2592 205 394 115 0 chr9 49382494 49382598 -68480029 - L2 LINE L2 -53 3219 3104 837 202 40 12 chr9 49382934 49383107 -68479520 - MER5A DNA MER1_type -11 178 1 2177 118 0 7 chr9 49383235 49383541 -68479086 + AluSx SINE Alu 1 304 -8 548 267 126 0 chr9 49383579 49383741 -68478886 + MER5A DNA MER1_type 4 189 0 669 202 51 56 chr9 49384024 49384202 -68478425 + MER5B DNA MER1_type 1 177 -1 2100 87 4 0 chr9 49384751 49385016 -68477611 - AluSq SINE Alu -7 306 41 534 274 89 68 chr9 49385135 49385619 -68477008 - MLT1H LTR MaLR -7 542 7 628 284 58 16 chr9 49385631 49385965 -68476662 + L2 LINE L2 2680 3031 -241 266 220 0 0 chr9 49385982 49386032 -68476595 - L2 LINE L2 0 3272 3223 201 342 202 0 chr9 49386146 49386260 -68476367 + L2 LINE L2 3136 3272 0 * 578 240 70 12 chr9 49386259 49386430 -68476197 + MIR SINE MIR 68 248 -14 259 321 132 9 chr9 49386503 49386609 -68476018 + L2 LINE L2 3150 3268 -4 287 174 0 0 chr9 49386869 49386915 -68475712 - MIR SINE MIR -1 261 216 950 171 12 0 chr9 49386922 49387086 -68475541 - FRAM SINE Alu 0 166 1 240 216 39 0 chr9 49387254 49387305 -68475322 - MER5B DNA MER1_type -3 175 123 1265 182 21 25 chr9 49387305 49387547 -68475080 + AluJb SINE Alu 1 241 -71 2070 148 48 16 chr9 49387548 49388047 -68474580 - MER41B LTR ERV1 -40 595 1 311 164 0 0 chr9 49388049 49388110 -68474517 + AluJb SINE Alu 240 300 -2 446 237 21 0 chr9 49388149 49388246 -68474381 - MER5B DNA MER1_type -79 99 1 292 279 0 0 chr9 49388247 49388315 -68474312 - MIR SINE MIR -25 237 170 1250 215 39 10 chr9 49388316 49388628 -68473999 + MER65C LTR ERV1 3 323 -138 3106 156 43 52 chr9 49388628 49389467 -68473160 + LTR1 LTR ERV1 1 785 0 796 139 32 13 chr9 49389467 49389609 -68473018 + MER65C LTR ERV1 317 461 0 461 186 0 12 chr9 49389615 49389701 -68472926 - MIR SINE MIR -94 168 84 1577 87 25 54 chr9 49389706 49389983 -68472644 + LTR39 LTR ERV1 2 270 -513 2040 201 47 75 chr9 49390083 49390587 -68472040 - MER99 DNA DNA -41 787 271 678 25 0 0 chr9 49390587 49390667 -68471960 + (TAGA)n Simple_repeat Simple_repeat 3 82 0 2000 87 0 8 chr9 49390673 49390925 -68471702 - AluSq SINE Alu -53 260 11 2040 201 47 75 chr9 49390925 49391025 -68471602 - MER99 DNA DNA -562 266 193 5625 132 19 37 chr9 49391342 49391610 -68471017 + L1PB2 LINE L1 4814 5085 -1066 1735 133 91 3 chr9 49391610 49391895 -68470732 - AluSg SINE Alu 0 310 1 5625 132 19 37 chr9 49391895 49392997 -68469630 + L1PB2 LINE L1 5085 6144 -7 28 91 0 0 chr9 49392997 49393074 -68469553 + AT_rich Low_complexity Low_complexity 1 77 0 24 32 0 0 chr9 49393185 49393216 -68469411 + AT_rich Low_complexity Low_complexity 1 31 0 318 231 0 0 chr9 49393333 49393398 -68469229 - MER99 DNA DNA -762 66 2 2381 128 80 5 chr9 49393699 49394097 -68468530 + MSTA LTR MaLR 1 428 0 412 298 49 49 chr9 49394823 49395028 -68467599 - MIR SINE MIR -29 233 29 180 288 110 27 chr9 49395073 49395146 -68467481 - L2 LINE L2 -57 3215 3137 21 36 0 0 chr9 49395165 49395193 -68467434 + AT_rich Low_complexity Low_complexity 1 28 0 203 311 172 8 chr9 49395242 49395364 -68467263 + MIR SINE MIR 6 147 -115 224 388 0 0 chr9 49395457 49395542 -68467085 - L2 LINE L2 -189 3083 2999 21 36 0 0 chr9 49395890 49395918 -68466709 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr9 49396030 49396052 -68466575 + AT_rich Low_complexity Low_complexity 1 22 0 2445 204 22 48 chr9 49396525 49396599 -68466028 + L1MB3 LINE L1 4927 5001 -1182 1209 126 0 0 chr9 49396599 49396797 -68465830 + L1MA4A LINE L1 6101 6298 -5 2445 204 22 48 chr9 49396797 49397696 -68464931 + L1MB3 LINE L1 5001 5866 -317 352 52 35 0 chr9 49397696 49397751 -68464876 + L1MB4 LINE L1 6120 6179 -1 346 278 76 0 chr9 49397895 49398039 -68464588 - L1M4 LINE L1 -873 5273 5119 1918 153 10 0 chr9 49398082 49398094 -68464533 - AluJb SINE Alu -11 301 291 846 98 0 0 chr9 49398094 49398216 -68464411 + (TTCC)n Simple_repeat Simple_repeat 3 124 0 1918 153 10 0 chr9 49398216 49398491 -68464136 - AluJb SINE Alu -21 291 11 1248 209 4 14 chr9 49398491 49398769 -68463858 + MER4D LTR ERV1 629 903 0 3383 194 8 62 chr9 49399676 49400618 -68462009 + L1PA10 LINE L1 1644 2535 -3611 * 10583 147 6 2 chr9 49400604 49402500 -68460127 + L1PA14 LINE L1 3504 5404 -757 3432 88 64 0 chr9 49402601 49403101 -68459526 + L1PA14 LINE L1 5621 6152 -9 582 280 104 35 chr9 49403612 49403930 -68458697 + Tigger8 DNA MER2_type 314 653 -13 1323 207 41 8 chr9 49403982 49404429 -68458198 + MLT1D LTR MaLR 1 505 0 512 299 64 6 chr9 49405608 49405765 -68456862 - MIR SINE MIR -96 166 1 726 150 0 9 chr9 49406372 49406485 -68456142 + FLAM_A SINE Alu 4 115 -18 519 17 0 0 chr9 49406485 49406545 -68456082 + (CATA)n Simple_repeat Simple_repeat 3 62 0 1426 166 0 0 chr9 49406676 49406935 -68455692 + L1PA10 LINE L1 2721 2979 -3167 6291 94 16 0 chr9 49406937 49408643 -68453984 + L1PA10 LINE L1 4439 6158 -10 323 162 0 29 chr9 49408665 49408733 -68453894 - L1MB8 LINE L1 -54 6124 6059 391 337 87 21 chr9 49408734 49409253 -68453374 - L1ME LINE L1 -303 5818 5265 9015 30 9 226 chr9 49409790 49411542 -68451085 - SVA Other Other 0 1386 15 260 311 38 98 chr9 49411895 49412027 -68450600 - L2 LINE L2 -20 3252 3129 460 313 59 64 chr9 49412331 49412843 -68449784 + L2 LINE L2 2724 3240 -73 528 326 53 32 chr9 49413854 49414139 -68448488 + MER102b DNA MER1_type 2 292 -49 210 37 0 0 chr9 49414190 49414217 -68448410 + (TG)n Simple_repeat Simple_repeat 1 27 0 232 299 93 19 chr9 49414260 49414367 -68448260 - L2 LINE L2 -236 3036 2922 180 0 0 0 chr9 49414394 49414414 -68448213 + (A)n Simple_repeat Simple_repeat 1 20 0 235 242 53 131 chr9 49414648 49415197 -68447430 - L1ME4a LINE L1 0 6121 5616 593 296 51 6 chr9 49416119 49416316 -68446311 - MIR SINE MIR -24 238 34 672 190 159 0 chr9 49416780 49416943 -68445684 - MER5A DNA MER1_type 0 189 1 3475 180 94 46 chr9 49417163 49417191 -68445436 + MER21B LTR ERV1 1 26 -837 2387 80 3 3 chr9 49417191 49417490 -68445137 - AluSq SINE Alu -14 299 1 3475 180 94 46 chr9 49417490 49418282 -68444345 + MER21B LTR ERV1 26 860 -3 1702 95 0 0 chr9 49418410 49418651 -68443976 + L1PA13 LINE L1 5922 6162 -1 251 254 0 0 chr9 49418736 49418799 -68443828 - L1 LINE L1 -2022 4124 4062 904 257 92 68 chr9 49418815 49419348 -68443279 + L1MC4a LINE L1 5438 5983 -1825 27 62 0 0 chr9 49420624 49420672 -68441955 + AT_rich Low_complexity Low_complexity 1 48 0 420 323 32 42 chr9 49420876 49420911 -68441716 - MIR3 SINE MIR -21 187 153 1033 239 28 0 chr9 49420911 49421129 -68441498 - MER58A DNA MER1_type 0 224 1 420 323 32 42 chr9 49421129 49421282 -68441345 - MIR3 SINE MIR -55 153 1 459 0 0 0 chr9 49422291 49422342 -68440285 + (TG)n Simple_repeat Simple_repeat 2 52 0 310 280 107 13 chr9 49422986 49423136 -68439491 - L1ME4a LINE L1 -238 5883 5720 530 287 28 0 chr9 49423147 49423328 -68439299 - L1ME4a LINE L1 -448 5673 5488 646 291 112 24 chr9 49426427 49426723 -68435904 - MLT1I LTR MaLR -8 401 80 21 0 0 0 chr9 49427661 49427682 -68434945 + AT_rich Low_complexity Low_complexity 1 21 0 2279 105 0 25 chr9 49428607 49428921 -68433706 + AluSq SINE Alu 1 306 -7 231 61 0 0 chr9 49429204 49429237 -68433390 + (GA)n Simple_repeat Simple_repeat 2 34 0 423 0 0 0 chr9 49429910 49429957 -68432670 + (TG)n Simple_repeat Simple_repeat 2 48 0 33 0 0 0 chr9 49430399 49430432 -68432195 + AT_rich Low_complexity Low_complexity 1 33 0 413 115 13 0 chr9 49430433 49430511 -68432116 - L1PB1 LINE L1 0 6151 6073 5278 153 84 22 chr9 49431387 49432347 -68430280 - LTR28 LTR ERV1 0 1020 1 259 425 43 7 chr9 49432552 49432693 -68429934 - L2 LINE L2 -22 3250 3105 207 0 0 0 chr9 49435816 49435839 -68426788 + (CA)n Simple_repeat Simple_repeat 2 24 0 232 207 171 24 chr9 49436228 49436310 -68426317 - MER58 DNA MER1_type -3 2417 2324 331 255 11 11 chr9 49436314 49436408 -68426219 - MER58 DNA MER1_type -112 103 10 219 296 80 11 chr9 49436792 49436880 -68425747 - L3 LINE CR1 0 1577 1484 200 59 29 0 chr9 49436885 49436919 -68425708 + (CA)n Simple_repeat Simple_repeat 2 36 0 453 315 31 37 chr9 49437570 49437732 -68424895 + MIR3 SINE MIR 3 163 -45 234 128 0 0 chr9 49437834 49437873 -68424754 + (T)n Simple_repeat Simple_repeat 1 39 0 4339 31 0 0 chr9 49438555 49439065 -68423562 - L1PA5 LINE L1 -6 6148 5639 1546 212 14 0 chr9 49439070 49439362 -68423265 - AluJb SINE Alu -15 297 2 240 279 115 10 chr9 49439557 49439661 -68422966 - MLT1K LTR MaLR -346 242 128 22 35 0 0 chr9 49439891 49439920 -68422707 + AT_rich Low_complexity Low_complexity 1 29 0 1618 236 107 84 chr9 49439964 49441165 -68421462 - HAL1 LINE L1 -46 2461 1233 2016 262 77 60 chr9 49441186 49442237 -68420390 - HAL1 LINE L1 -1341 1166 98 189 74 0 0 chr9 49443025 49443052 -68419575 + (T)n Simple_repeat Simple_repeat 1 27 0 3503 152 42 40 chr9 49443882 49444591 -68418036 - MER50 LTR ERV1 -23 711 1 328 284 101 9 chr9 49445130 49445239 -68417388 + L2 LINE L2 3154 3272 0 21 0 0 0 chr9 49446659 49446680 -68415947 + AT_rich Low_complexity Low_complexity 1 21 0 6410 63 15 53 chr9 49446694 49447686 -68414941 - SVA Other Other 0 1386 433 1173 84 9 61 chr9 49447802 49448365 -68414262 - SVA Other Other -520 866 508 5237 65 36 55 chr9 49448379 49449204 -68413423 - SVA Other Other -520 866 57 216 0 0 0 chr9 49449204 49449228 -68413399 + (GGGAGA)n Simple_repeat Simple_repeat 1 24 0 5058 199 35 71 chr9 49449334 49449895 -68412732 - L1 LINE L1 -1439 4707 4127 1841 130 138 51 chr9 49449895 49450070 -68412557 + MSTA LTR MaLR 1 159 -269 2380 75 3 0 chr9 49450070 49450365 -68412262 + AluY SINE Alu 1 296 -15 1841 130 138 51 chr9 49450365 49450580 -68412047 + MSTA LTR MaLR 159 425 -3 5058 199 35 71 chr9 49450580 49451638 -68410989 - L1 LINE L1 -2019 4127 3146 2164 133 3 3 chr9 49451708 49452040 -68410587 - L1PA16 LINE L1 -9 6157 5826 2185 117 0 26 chr9 49452069 49452376 -68410251 + AluSx SINE Alu 1 299 -13 22 35 0 0 chr9 49452499 49452528 -68410099 + AT_rich Low_complexity Low_complexity 1 29 0 227 376 74 27 chr9 49452558 49452707 -68409920 - L2 LINE L2 -588 2726 2571 234 0 0 0 chr9 49452849 49452875 -68409752 + (TG)n Simple_repeat Simple_repeat 1 26 0 307 123 15 31 chr9 49453006 49453071 -68409556 - LTR33A LTR ERVL -28 495 432 240 333 0 0 chr9 49453364 49453439 -68409188 - LTR33 LTR ERVL -340 181 107 2891 105 19 21 chr9 49453439 49453868 -68408759 - MSTC LTR MaLR 0 428 1 215 257 176 0 chr9 49454544 49454618 -68408009 - L2 LINE L2 0 3272 3186 263 365 17 9 chr9 49454722 49454837 -68407790 - L2 LINE L2 -195 3077 2962 2140 112 135 23 chr9 49456298 49456683 -68405944 - MSTA LTR MaLR 0 428 1 379 308 54 22 chr9 49456745 49456930 -68405697 + MIR SINE MIR 24 214 -48 827 124 118 0 chr9 49457046 49457215 -68405412 + MER20 DNA MER1_type 31 219 0 280 222 63 87 chr9 49457300 49457426 -68405201 + L2 LINE L2 3141 3263 -9 269 273 137 36 chr9 49457764 49457903 -68404724 + MIR SINE MIR 84 236 -26 365 144 52 13 chr9 49458424 49458447 -68404180 + (TA)n Simple_repeat Simple_repeat 2 23 -137 2070 119 3 3 chr9 49458447 49458733 -68403894 + AluSg SINE Alu 1 286 -24 365 144 52 13 chr9 49458733 49458862 -68403765 + (TA)n Simple_repeat Simple_repeat 23 160 0 25 31 0 0 chr9 49458868 49458900 -68403727 + AT_rich Low_complexity Low_complexity 1 32 0 1893 164 66 94 chr9 49459226 49459755 -68402872 - LTR8A LTR ERV1 0 727 214 7373 176 14 6 chr9 49459888 49462431 -68400196 + L1PB1 LINE L1 3592 6150 -1 1007 149 62 98 chr9 49462458 49462865 -68399762 + MLT1C LTR MaLR 11 467 0 239 227 0 0 chr9 49463248 49463292 -68399335 - MER20 DNA MER1_type 0 219 176 805 171 14 7 chr9 49463392 49463538 -68399089 - MER20 DNA MER1_type -33 186 40 1606 212 0 3 chr9 49463645 49463937 -68398690 + AluJo SINE Alu 1 291 -21 1166 254 111 42 chr9 49465584 49466088 -68396539 + MER34 LTR ERV1 4 542 0 404 305 89 16 chr9 49466180 49466370 -68396257 - MIR SINE MIR -30 232 29 394 234 152 82 chr9 49467957 49468201 -68394426 + MLT1I LTR MaLR 145 405 -4 355 219 63 172 chr9 49468265 49468503 -68394124 + MIR SINE MIR 41 252 -10 8242 113 2 6 chr9 49468826 49469975 -68392652 + THE1C-int LTR MaLR 437 1580 0 2492 102 17 17 chr9 49469975 49470337 -68392290 + THE1C LTR MaLR 1 362 -13 571 97 11 54 chr9 49470335 49470428 -68392199 + MER4D LTR ERV1 815 903 0 * 468 319 48 21 chr9 49470618 49470806 -68391821 - MLT1K LTR MaLR -304 284 92 250 348 17 34 chr9 49470929 49471047 -68391580 + MIR SINE MIR 7 123 -85 228 347 18 84 chr9 49472420 49472646 -68389981 + MIR SINE MIR 4 210 -52 367 246 53 97 chr9 49472742 49472949 -68389678 - MIR SINE MIR -45 217 20 705 186 0 0 chr9 49473254 49473372 -68389255 + FLAM_C SINE Alu 1 118 -15 769 254 32 23 chr9 49474436 49474656 -68387971 + MIR SINE MIR 5 226 -36 1939 158 71 13 chr9 49475381 49475762 -68386865 + L1MD1 LINE L1 5833 6235 -7 235 250 44 0 chr9 49475893 49475961 -68386666 - MIR SINE MIR -63 199 129 31 26 0 0 chr9 49476441 49476479 -68386148 + AT_rich Low_complexity Low_complexity 1 38 0 379 293 108 24 chr9 49476786 49476953 -68385674 + MIR3 SINE MIR 25 205 -3 195 42 0 0 chr9 49477359 49477383 -68385244 + (A)n Simple_repeat Simple_repeat 1 24 0 565 366 31 0 chr9 49477580 49477804 -68384823 - MIR SINE MIR -4 258 28 205 351 0 0 chr9 49477896 49477953 -68384674 - MIR SINE MIR -148 114 58 668 106 0 2 chr9 49478556 49478775 -68383852 + AluSx SINE Alu 1 272 -38 521 148 0 0 chr9 49478876 49478957 -68383670 + AluSg/x SINE Alu 211 291 -19 714 206 133 54 chr9 49478960 49479275 -68383352 + L1MC4 LINE L1 7703 8042 0 1777 137 68 10 chr9 49479542 49479834 -68382793 - AluJb SINE Alu -2 310 2 2065 87 7 3 chr9 49480316 49480605 -68382022 - L1PA10 LINE L1 -271 5897 5608 295 61 38 19 chr9 49480604 49480656 -68381971 + L1PA10 LINE L1 6104 6164 -4 * 238 67 44 0 chr9 49481024 49481069 -68381558 + (CAA)n Simple_repeat Simple_repeat 2 48 0 1750 178 13 7 chr9 49482250 49482553 -68380074 - AluJb SINE Alu -7 305 1 374 179 19 57 chr9 49482666 49482772 -68379855 + MER103 DNA DNA 64 165 -1 216 329 25 0 chr9 49483029 49483108 -68379519 + L2 LINE L2 3190 3270 -2 21 36 0 0 chr9 49484590 49484618 -68378009 + AT_rich Low_complexity Low_complexity 1 28 0 393 257 197 33 chr9 49485460 49485612 -68377015 - MER5A DNA MER1_type -6 183 7 449 314 50 45 chr9 49486631 49486873 -68375754 - MIR SINE MIR -6 256 14 185 212 0 0 chr9 49487563 49487596 -68375031 + MIR SINE MIR 218 250 -12 192 270 95 16 chr9 49488348 49488411 -68374216 + L2 LINE L2 3194 3261 -11 561 146 0 0 chr9 49489537 49489619 -68373008 + FLAM SINE Alu 42 123 -20 225 189 132 0 chr9 49490320 49490373 -68372254 + MIR SINE MIR 123 182 -80 309 256 49 0 chr9 49490565 49490647 -68371980 - MSTD LTR MaLR -307 89 4 320 157 0 0 chr9 49490703 49490754 -68371873 + MER5B DNA MER1_type 126 176 -2 2073 108 0 49 chr9 49490784 49491269 -68371358 + AluSx SINE Alu 7 476 0 2173 93 26 13 chr9 49491796 49492098 -68370529 - AluSq SINE Alu -7 306 1 238 189 38 0 chr9 49493750 49493803 -68368824 + (TA)n Simple_repeat Simple_repeat 2 56 0 196 204 37 19 chr9 49493893 49493947 -68368680 + L3 LINE CR1 1229 1283 -294 1936 126 47 27 chr9 49493979 49494344 -68368283 - L1MA8 LINE L1 -113 6178 5807 325 256 85 0 chr9 49496395 49496477 -68366150 + MER5A DNA MER1_type 14 102 -87 288 372 7 15 chr9 49498378 49498515 -68364112 + L2 LINE L2 3133 3268 -4 1055 176 13 48 chr9 49498637 49498864 -68363763 - MER20 DNA MER1_type 0 219 1 31 0 0 0 chr9 49499774 49499805 -68362822 + AT_rich Low_complexity Low_complexity 1 31 0 216 0 0 0 chr9 49501256 49501280 -68361347 + (T)n Simple_repeat Simple_repeat 1 24 0 842 77 0 0 chr9 49501591 49501695 -68360932 - AluSg/x SINE Alu -20 289 186 22 0 0 0 chr9 49502921 49502943 -68359684 + AT_rich Low_complexity Low_complexity 1 22 0 2271 69 21 0 chr9 49503616 49503904 -68358723 + AluY SINE Alu 9 302 -9 1629 5 5 0 chr9 49504166 49504352 -68358275 - L1HS LINE L1 0 6155 5969 460 307 93 21 chr9 49504788 49504997 -68357630 - MIR SINE MIR -12 250 31 758 97 0 9 chr9 49505147 49505261 -68357366 + MER30B DNA MER1_type 1 113 -77 496 367 25 4 chr9 49508687 49508924 -68353703 + MIR SINE MIR 20 261 -1 693 58 0 0 chr9 49509932 49510019 -68352608 + AluSc SINE Alu 1 87 -222 25 65 0 0 chr9 49510308 49510354 -68352273 + AT_rich Low_complexity Low_complexity 1 46 0 252 324 216 7 chr9 49511752 49511900 -68350727 - MIR3 SINE MIR -16 192 14 265 313 27 0 chr9 49513189 49513301 -68349326 - MER103 DNA DNA -49 117 3 190 235 250 0 chr9 49513738 49513806 -68348821 + L2 LINE L2 3151 3235 -37 729 301 57 4 chr9 49513929 49514158 -68348469 - MIR SINE MIR -19 243 3 186 298 35 35 chr9 49515785 49515842 -68346785 + MIR SINE MIR 41 97 -165 1157 150 0 6 chr9 49516086 49516259 -68346368 + AluSg/x SINE Alu 139 310 0 189 159 68 0 chr9 49516294 49516338 -68346289 + MIR SINE MIR 160 206 -56 1544 177 4 15 chr9 49516463 49516728 -68345899 - AluJo SINE Alu -41 271 10 573 209 0 0 chr9 49516738 49516843 -68345784 - FLAM_C SINE Alu -18 125 21 200 336 102 36 chr9 49517190 49517327 -68345300 + L2 LINE L2 2910 3055 -217 692 262 12 18 chr9 49518981 49519145 -68343482 + MER5A DNA MER1_type 21 183 -6 206 237 254 25 chr9 49519523 49519641 -68342986 - MIR SINE MIR -17 245 101 29 0 0 0 chr9 49520314 49520343 -68342284 + AT_rich Low_complexity Low_complexity 1 29 0 2099 103 0 4 chr9 49520517 49520790 -68341837 - AluSc SINE Alu -10 299 28 2207 106 7 0 chr9 49520822 49521115 -68341512 - AluSq SINE Alu -18 295 1 468 315 35 35 chr9 49521167 49521364 -68341263 + MIR SINE MIR 24 220 -42 1937 109 0 0 chr9 49521634 49521890 -68340737 - AluSx SINE Alu -56 256 1 181 256 133 44 chr9 49523623 49523713 -68338914 + L2 LINE L2 3173 3270 -2 21 0 0 0 chr9 49526689 49526710 -68335917 + AT_rich Low_complexity Low_complexity 1 21 0 260 321 0 48 chr9 49529474 49529558 -68333069 + MER5A DNA MER1_type 18 97 -92 257 325 133 40 chr9 49529761 49529912 -68332715 + MIR3 SINE MIR 20 184 -24 500 314 93 8 chr9 49530064 49530289 -68332338 - MIR SINE MIR -17 245 2 403 294 89 42 chr9 49530429 49530687 -68331940 + L2 LINE L2 2783 3046 -226 189 214 14 100 chr9 49530994 49531064 -68331563 + MIR SINE MIR 172 235 -27 772 228 76 5 chr9 49531501 49531712 -68330915 + MIR SINE MIR 37 262 0 315 71 0 0 chr9 49531718 49531760 -68330867 + (TG)n Simple_repeat Simple_repeat 1 42 0 655 270 22 11 chr9 49532199 49532377 -68330250 - MIR SINE MIR -4 258 79 389 271 121 15 chr9 49536674 49536810 -68325817 - MIR SINE MIR -86 122 3 514 269 62 6 chr9 49536944 49537104 -68325523 - MER58A DNA MER1_type -37 187 19 234 62 0 0 chr9 49537986 49538018 -68324609 + (CA)n Simple_repeat Simple_repeat 1 32 0 527 146 0 19 chr9 49538295 49538390 -68324237 + MLT1A2 LTR MaLR 1 93 -281 465 95 0 0 chr9 49538390 49538453 -68324174 - THE1C LTR MaLR 0 375 313 217 273 45 0 chr9 49539359 49539425 -68323202 - L2 LINE L2 -35 3278 3210 307 279 12 43 chr9 49539693 49539854 -68322773 + (TCTCTG)n Simple_repeat Simple_repeat 4 159 0 290 287 22 39 chr9 49539805 49539986 -68322641 + (TCTG)n Simple_repeat Simple_repeat 3 180 0 * 912 143 0 0 chr9 49540394 49540527 -68322100 - AluSq/x SINE Alu -179 133 1 726 158 16 0 chr9 49541785 49541912 -68320715 + AluSg/x SINE Alu 182 310 0 582 306 103 64 chr9 49542498 49543210 -68319417 - L2 LINE L2 -8 3264 2525 436 63 48 16 chr9 49543240 49543303 -68319324 + Alu SINE Alu 227 291 -20 210 200 20 0 chr9 49545540 49545590 -68317037 + (TA)n Simple_repeat Simple_repeat 1 51 0 1362 78 0 11 chr9 49546665 49546844 -68315783 + AluSx SINE Alu 1 177 -135 448 174 61 51 chr9 49547027 49547125 -68315502 - FLAM_A SINE Alu -18 124 26 387 278 0 0 chr9 49547267 49547364 -68315263 + Charlie5 DNA MER1_type 1 97 -2515 1927 152 3 3 chr9 49547379 49547675 -68314952 + AluJb SINE Alu 1 296 -16 640 201 105 21 chr9 49547696 49547935 -68314692 + Charlie5 DNA MER1_type 2301 2559 -53 1013 119 0 19 chr9 49548047 49548207 -68314420 - THE1C LTR MaLR -218 157 1 927 248 14 5 chr9 49548207 49548426 -68314201 + MLT1A1 LTR MaLR 89 309 -56 22 35 0 0 chr9 49549201 49549230 -68313397 + AT_rich Low_complexity Low_complexity 1 29 0 593 246 134 6 chr9 49549398 49549577 -68313050 + MLT1A1 LTR MaLR 304 505 0 266 132 19 0 chr9 49549748 49549801 -68312826 + (TA)n Simple_repeat Simple_repeat 1 54 0 1829 171 68 11 chr9 49549808 49550159 -68312468 - MSTB LTR MaLR -55 371 1 1918 161 6 6 chr9 49550159 49550494 -68312133 - MSTB-int LTR MaLR 0 1651 1317 280 310 140 12 chr9 49550686 49550857 -68311770 + MLT1D LTR MaLR 313 505 0 190 140 20 20 chr9 49551028 49551078 -68311549 + (TA)n Simple_repeat Simple_repeat 1 50 0 1555 209 73 0 chr9 49551098 49551438 -68311189 - MSTB LTR MaLR -61 365 1 7372 194 67 9 chr9 49551438 49552998 -68309629 - MSTB-int LTR MaLR 0 1651 2 928 186 38 29 chr9 49553001 49553211 -68309416 - MSTB LTR MaLR -2 424 213 275 310 148 21 chr9 49553645 49553787 -68308840 - MER5B DNA MER1_type -18 160 1 892 158 82 0 chr9 49553841 49554012 -68308615 + MER5A DNA MER1_type 5 189 0 23 0 0 0 chr9 49554231 49554254 -68308373 + AT_rich Low_complexity Low_complexity 1 23 0 795 297 81 49 chr9 49554457 49554879 -68307748 - MLT1J LTR MaLR -3 508 66 6676 71 15 2 chr9 49554879 49555768 -68306859 + L1PA7 LINE L1 5255 6154 0 795 297 81 49 chr9 49555768 49555837 -68306790 - MLT1J LTR MaLR -445 66 1 2180 113 0 0 chr9 49555888 49556207 -68306420 + AluSx SINE Alu 1 319 0 787 235 95 16 chr9 49556439 49556479 -68306148 - L1MEd LINE L1 -2889 3240 3205 2326 95 0 3 chr9 49556479 49556785 -68305842 - AluSc SINE Alu -2 307 3 787 235 95 16 chr9 49556785 49557114 -68305513 - L1MEd LINE L1 -2924 3205 2842 637 167 35 0 chr9 49557324 49557468 -68305159 - L1MA9 LINE L1 0 6312 6164 2978 157 18 9 chr9 49557752 49558263 -68304364 - L1MA9 LINE L1 -148 6164 5646 3394 159 13 16 chr9 49558263 49558868 -68303759 - MER6A DNA MER2_type -1 604 2 2978 157 18 9 chr9 49558868 49558909 -68303718 - L1MA9 LINE L1 -666 5646 5607 2110 247 65 29 chr9 49558905 49559511 -68303116 - L1M4 LINE L1 -1666 4480 3831 * 1941 105 44 34 chr9 49559511 49559807 -68302820 - AluSq SINE Alu -14 299 1 2110 247 65 29 chr9 49559807 49560077 -68302550 - L1M4 LINE L1 -2315 3831 3572 431 270 70 59 chr9 49560283 49560721 -68301906 - L1MEd LINE L1 -4549 1580 1248 435 167 0 0 chr9 49560751 49560823 -68301804 - FLAM_A SINE Alu -28 114 43 5862 107 10 1 chr9 49560889 49562531 -68300096 - L1PA16 LINE L1 -13 6153 4488 396 333 91 37 chr9 49562536 49563140 -68299487 - L1MEd LINE L1 -4989 1143 580 502 276 57 13 chr9 49563762 49563990 -68298637 - L1MEd LINE L1 -4986 1133 896 422 279 22 22 chr9 49564814 49564993 -68297634 - L1MEd LINE L1 -5935 184 6 1053 209 9 0 chr9 49566123 49566334 -68296293 + L1MB5 LINE L1 5954 6166 -8 22 0 0 0 chr9 49566752 49566774 -68295853 + AT_rich Low_complexity Low_complexity 1 22 0 255 338 12 0 chr9 49568023 49568103 -68294524 - MIR SINE MIR -102 160 80 2019 73 0 11 chr9 49569572 49569847 -68292780 + L1PA7 LINE L1 5880 6151 -3 249 268 42 66 chr9 49570106 49570319 -68292308 - L1ME LINE L1 -350 5771 5564 21 0 0 0 chr9 49570391 49570412 -68292215 + AT_rich Low_complexity Low_complexity 1 21 0 408 281 54 38 chr9 49571401 49571586 -68291041 - MLT1K LTR MaLR -2 586 399 218 131 48 36 chr9 49572898 49572982 -68289645 + (TTATA)n Simple_repeat Simple_repeat 1 85 0 208 213 0 43 chr9 49573176 49573223 -68289404 - MIR3 SINE MIR -37 171 127 194 363 128 10 chr9 49574359 49574461 -68288166 + L2 LINE L2 3159 3272 0 267 317 49 42 chr9 49574769 49574911 -68287716 + L2 LINE L2 2658 2800 -514 201 39 0 0 chr9 49574927 49574953 -68287674 + (TA)n Simple_repeat Simple_repeat 2 27 0 358 243 112 0 chr9 49575028 49575135 -68287492 - MER112 DNA MER1_type -47 213 95 389 283 45 57 chr9 49577089 49577333 -68285294 + L2 LINE L2 2619 2859 -455 207 171 0 0 chr9 49577412 49577447 -68285180 + CT-rich Low_complexity Low_complexity 2 36 0 309 292 86 111 chr9 49577447 49577772 -68284855 + L2 LINE L2 2948 3264 -8 773 201 81 11 chr9 49579170 49579344 -68283283 - MER5A DNA MER1_type 0 189 4 22 0 0 0 chr9 49580072 49580094 -68282533 + AT_rich Low_complexity Low_complexity 1 22 0 2136 128 0 0 chr9 49580197 49580493 -68282134 - AluSx SINE Alu -16 296 1 38 61 0 0 chr9 49581167 49581233 -68281394 + AT_rich Low_complexity Low_complexity 1 66 0 374 356 132 6 chr9 49581821 49581995 -68280632 + MER91A DNA MER1_type 1 196 0 22 35 0 0 chr9 49582444 49582473 -68280154 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr9 49582512 49582540 -68280087 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr9 49583018 49583041 -68279586 + AT_rich Low_complexity Low_complexity 1 23 0 2049 96 7 4 chr9 49585646 49585950 -68276677 - AluSg SINE Alu 0 305 1 2079 167 15 0 chr9 49586065 49586406 -68276221 + Tigger1 DNA MER2_type 3 348 -2070 403 167 0 0 chr9 49586506 49586572 -68276055 + Tigger1 DNA MER2_type 699 764 -1654 1051 135 99 5 chr9 49586591 49586783 -68275844 + Tigger1 DNA MER2_type 2209 2418 0 322 347 137 38 chr9 49587842 49588104 -68274523 + L2 LINE L2 2985 3272 0 46 95 0 0 chr9 49589092 49589229 -68273398 + AT_rich Low_complexity Low_complexity 1 137 0 23 33 0 0 chr9 49589352 49589382 -68273245 + AT_rich Low_complexity Low_complexity 1 30 0 5614 213 19 7 chr9 49589595 49591620 -68271007 - L1MC1 LINE L1 -28 6585 4536 3322 227 65 22 chr9 49591614 49592013 -68270614 - L1MC1 LINE L1 -2450 3976 3595 * 1647 160 25 18 chr9 49592013 49592295 -68270332 - AluJo SINE Alu -15 297 14 3322 227 65 22 chr9 49592295 49594039 -68268588 - L1MC1 LINE L1 -2831 3595 1747 942 73 16 0 chr9 49594040 49594164 -68268463 - AluSp/q SINE Alu -11 302 177 225 307 25 31 chr9 49594316 49594479 -68268148 - L1M4 LINE L1 -3323 2823 2662 2156 122 7 3 chr9 49595095 49595399 -68267228 + AluSg SINE Alu 1 305 -5 195 170 0 0 chr9 49595441 49595488 -68267139 + CT-rich Low_complexity Low_complexity 2 48 0 185 222 44 0 chr9 49595599 49595644 -68266983 + L2 LINE L2 3255 3301 -12 489 197 324 5 chr9 49595705 49595862 -68266765 - MIR SINE MIR 0 262 54 980 218 88 0 chr9 49596097 49596313 -68266314 - MIR SINE MIR -25 237 3 281 233 11 0 chr9 49599396 49599486 -68263141 + GA-rich Low_complexity Low_complexity 3 93 0 26 30 0 0 chr9 49599788 49599821 -68262806 + AT_rich Low_complexity Low_complexity 1 33 0 429 299 99 12 chr9 49599923 49600257 -68262370 + LTR50 LTR ERVL 1 453 -342 1455 260 55 17 chr9 49600259 49600675 -68261952 + ERVL LTR ERVL 3067 3498 -2266 794 292 117 24 chr9 49600832 49601072 -68261555 + ERVL LTR ERVL 4899 5115 -649 1482 144 7 85 chr9 49601072 49601343 -68261284 + AluJb SINE Alu 1 250 -62 794 292 117 24 chr9 49601343 49601639 -68260988 + ERVL LTR ERVL 5115 5485 -279 420 255 167 21 chr9 49601941 49602133 -68260494 + LTR50 LTR ERVL 1 220 -575 219 330 50 30 chr9 49602293 49602393 -68260234 - MIR SINE MIR -81 127 26 27 29 0 0 chr9 49602553 49602587 -68260040 + AT_rich Low_complexity Low_complexity 1 34 0 2166 112 0 37 chr9 49602614 49602936 -68259691 - AluSx SINE Alu -2 310 1 25 0 0 0 chr9 49602978 49603003 -68259624 + AT_rich Low_complexity Low_complexity 1 25 0 271 311 84 18 chr9 49603030 49603197 -68259430 - MIR SINE MIR -10 252 75 718 179 0 0 chr9 49604115 49604232 -68258395 - FLAM_C SINE Alu -15 118 2 664 228 31 19 chr9 49604451 49604613 -68258014 - MIR SINE MIR -15 247 84 2251 98 40 98 chr9 49605948 49606395 -68256232 + SVA Other Other 446 866 -520 6792 58 7 37 chr9 49606412 49607375 -68255252 + SVA Other Other 433 1366 -20 239 0 32 0 chr9 49607378 49607409 -68255218 + (TAA)n Simple_repeat Simple_repeat 2 33 0 26 0 0 0 chr9 49607409 49607435 -68255192 + AT_rich Low_complexity Low_complexity 1 26 0 5545 160 11 48 chr9 49607436 49608927 -68253700 - L1PB1 LINE L1 -1 6866 5435 213 65 0 0 chr9 49608927 49608958 -68253669 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5545 160 11 48 chr9 49608958 49609377 -68253250 - L1PB1 LINE L1 -1432 5435 5002 345 167 15 0 chr9 49609380 49609446 -68253181 - L1PB1 LINE L1 -1947 4915 4849 10454 111 39 16 chr9 49609547 49612022 -68250605 - L1PB1 LINE L1 -3489 3373 697 418 319 104 17 chr9 49612129 49612571 -68250056 + L1ME4a LINE L1 5422 5912 -209 1389 197 81 0 chr9 49613019 49613303 -68249324 - L1MCa LINE L1 -6061 365 59 264 244 55 10 chr9 49613384 49613505 -68249122 + L1M2 LINE L1 5344 5468 -774 249 139 0 0 chr9 49613520 49613556 -68249071 - L1MCa LINE L1 -6372 54 19 2211 106 3 3 chr9 49613745 49614047 -68248580 - AluSx SINE Alu -10 302 1 713 187 13 148 chr9 49614221 49614451 -68248176 - MSTC LTR MaLR -19 409 211 719 200 63 153 chr9 49614620 49615034 -68247593 + LTR28 LTR ERV1 14 487 -285 492 265 61 8 chr9 49615034 49615166 -68247461 + MER58B DNA MER1_type 203 341 0 6904 220 33 17 chr9 49615325 49616980 -68245647 - L1M3 LINE L1 -725 5455 3772 2392 158 31 19 chr9 49616980 49617405 -68245222 - MSTB1 LTR MaLR -2 430 1 6904 220 33 17 chr9 49617405 49617854 -68244773 - L1M3 LINE L1 -2408 3772 3332 570 313 26 65 chr9 49618036 49618388 -68244239 - L2 LINE L2 -715 2599 2262 29 47 0 0 chr9 49619043 49619086 -68243541 + AT_rich Low_complexity Low_complexity 1 43 0 300 264 11 11 chr9 49620307 49620394 -68242233 + MIR3 SINE MIR 99 185 -23 709 258 44 56 chr9 49621698 49621950 -68240677 + L2 LINE L2 3065 3313 0 229 323 82 72 chr9 49622062 49622200 -68240427 - L2 LINE L2 -778 2536 2401 1871 133 0 47 chr9 49622200 49622500 -68240127 + AluSx SINE Alu 1 286 -26 229 323 82 72 chr9 49622500 49622763 -68239864 - L2 LINE L2 -913 2401 2131 230 293 274 6 chr9 49622932 49623096 -68239531 - Charlie8 DNA MER1_type -2178 239 32 2105 134 0 0 chr9 49624282 49624573 -68238054 - AluSx SINE Alu -21 291 1 561 272 124 32 chr9 49624875 49625630 -68236997 + L1ME2 LINE L1 5083 5906 -258 22 0 0 0 chr9 49625639 49625661 -68236966 + AT_rich Low_complexity Low_complexity 1 22 0 2194 103 7 0 chr9 49625661 49625951 -68236676 - AluSq SINE Alu -21 292 1 221 197 16 0 chr9 49626955 49627016 -68235611 + (TA)n Simple_repeat Simple_repeat 1 62 0 1254 257 116 39 chr9 49627194 49627907 -68234720 + LTR1B LTR ERV1 59 826 0 876 119 43 47 chr9 49628516 49628689 -68233938 + MSTB LTR MaLR 2 199 -233 1099 168 5 0 chr9 49628703 49628900 -68233727 + L1PBa LINE L1 3 200 -6663 12195 132 106 7 chr9 49628902 49631732 -68230895 + L1PBa LINE L1 636 3748 -3114 827 272 66 9 chr9 49632153 49632381 -68230246 + MIR SINE MIR 1 241 -21 218 383 32 0 chr9 49632456 49632550 -68230077 - L2 LINE L2 -4 3268 3172 209 203 31 16 chr9 49633538 49633602 -68229025 + (TA)n Simple_repeat Simple_repeat 1 65 0 1110 177 72 24 chr9 49633731 49633970 -68228657 + Tigger7 DNA MER2_type 1 243 -462 1061 152 43 5 chr9 49633960 49634144 -68228483 + Tigger7 DNA MER2_type 409 599 -134 * 344 226 5 8 chr9 49635143 49635355 -68227272 + AluJo SINE Alu 1 274 -28 219 36 0 0 chr9 49635360 49635388 -68227239 + (TG)n Simple_repeat Simple_repeat 2 29 0 359 219 0 0 chr9 49637353 49637417 -68225210 - L2 LINE L2 -2 3270 3207 195 304 72 72 chr9 49637684 49637891 -68224736 + MIR SINE MIR 40 246 -16 257 329 55 63 chr9 49640276 49640531 -68222096 + MLT1K LTR MaLR 184 436 -152 541 85 53 11 chr9 49640704 49640798 -68221829 + MER4A LTR ERV1 1 98 -566 1576 137 18 29 chr9 49640846 49641124 -68221503 + MER4A LTR ERV1 372 646 -18 211 258 0 32 chr9 49641322 49641384 -68221243 + MIR SINE MIR 202 261 -1 301 105 0 18 chr9 49641749 49641806 -68220821 - AluSc SINE Alu 0 299 244 27 29 0 0 chr9 49642166 49642200 -68220427 + AT_rich Low_complexity Low_complexity 1 34 0 8295 53 0 0 chr9 49642716 49643684 -68218943 - LTR5 LTR ERVK 0 969 2 23 0 0 0 chr9 49643941 49643964 -68218663 + AT_rich Low_complexity Low_complexity 1 23 0 2057 232 72 56 chr9 49644949 49645590 -68217037 + MLT1E1 LTR MaLR 1 651 -3 192 231 0 0 chr9 49645684 49645736 -68216891 + (TA)n Simple_repeat Simple_repeat 1 52 0 276 30 0 0 chr9 49645819 49645852 -68216775 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1290 248 108 30 chr9 49645884 49646412 -68216215 + L1ME1 LINE L1 5593 6161 -5 23 54 0 0 chr9 49646491 49646528 -68216099 + AT_rich Low_complexity Low_complexity 1 37 0 23 68 0 0 chr9 49647041 49647085 -68215542 + AT_rich Low_complexity Low_complexity 1 44 0 282 375 23 0 chr9 49647590 49647718 -68214909 + L3 LINE CR1 1444 1574 -3 4156 236 42 30 chr9 49647954 49648500 -68214127 - MSTD-int LTR MaLR -641 1094 556 1460 170 50 50 chr9 49648500 49648825 -68213802 - AluJb SINE Alu 0 325 1 4156 236 42 30 chr9 49648825 49649147 -68213480 - MSTD-int LTR MaLR -1179 556 208 1129 214 60 42 chr9 49649147 49649483 -68213144 + MER2 DNA MER2_type 2 343 -1 4156 236 42 30 chr9 49649483 49649693 -68212934 - MSTD-int LTR MaLR -1527 208 2 856 200 6 33 chr9 49649695 49649866 -68212761 - MSTD LTR MaLR 0 396 231 587 280 61 93 chr9 49649866 49650555 -68212072 + PABL_B LTR ERV1 1 667 0 649 229 7 26 chr9 49650563 49650735 -68211892 - MSTC LTR MaLR -218 147 1 22 0 0 0 chr9 49650924 49650946 -68211681 + AT_rich Low_complexity Low_complexity 1 22 0 1063 124 11 0 chr9 49651979 49652157 -68210470 + L1MA4A LINE L1 6124 6303 0 207 0 0 0 chr9 49652622 49652645 -68209982 + (TG)n Simple_repeat Simple_repeat 1 23 0 213 39 0 0 chr9 49653165 49653191 -68209436 + (CA)n Simple_repeat Simple_repeat 1 26 0 191 214 0 18 chr9 49653259 49653315 -68209312 + (CATA)n Simple_repeat Simple_repeat 2 56 0 1129 285 95 35 chr9 49654363 49655459 -68207168 - L1ME LINE L1 -4473 1607 465 1527 230 40 40 chr9 49655466 49655935 -68206692 + MLT1D LTR MaLR 37 505 0 302 145 53 13 chr9 49656731 49656756 -68205871 + MADE1 DNA Mariner 2 25 -55 2264 113 0 0 chr9 49656756 49657056 -68205571 - AluSq SINE Alu -13 300 1 302 145 53 13 chr9 49657056 49657106 -68205521 + MADE1 DNA Mariner 25 80 0 425 326 8 8 chr9 49658174 49658303 -68204324 + L2 LINE L2 3179 3307 -6 1145 89 64 0 chr9 49658846 49659027 -68203600 - AluSq SINE Alu 0 313 134 304 381 76 14 chr9 49659816 49660173 -68202454 - HERV16 LTR ERVL -4464 532 154 1923 177 22 87 chr9 49660336 49660832 -68201795 - MLT1C LTR MaLR -3 464 1 363 348 119 23 chr9 49660839 49661149 -68201478 - LTR16C LTR ERVL -21 470 131 519 133 9 48 chr9 49661150 49661255 -68201372 + MLT1B LTR MaLR 1 101 -289 557 189 98 15 chr9 49661284 49661416 -68201211 + MLT1B LTR MaLR 248 390 0 1273 139 73 0 chr9 49662617 49662862 -68199765 - L1MA8 LINE L1 0 6291 6029 243 318 12 12 chr9 49663949 49664034 -68198593 + MIR SINE MIR 82 166 -96 320 333 102 28 chr9 49664926 49665103 -68197524 - MIR3 SINE MIR -6 202 13 467 158 38 98 chr9 49665924 49666057 -68196570 + L2 LINE L2 3184 3308 -5 470 295 109 5 chr9 49666164 49666357 -68196270 - MIR SINE MIR -1 261 49 2180 12 0 0 chr9 49666909 49667149 -68195478 + AluYa5 SINE Alu 72 311 0 244 0 0 0 chr9 49667149 49667176 -68195451 + (A)n Simple_repeat Simple_repeat 1 180 0 431 306 104 28 chr9 49667221 49667538 -68195089 - MER102b DNA MER1_type 0 341 1 23 0 0 0 chr9 49667988 49668011 -68194616 + AT_rich Low_complexity Low_complexity 1 23 0 1125 162 0 11 chr9 49668011 49668190 -68194437 + FRAM SINE Alu 1 176 0 1537 210 183 11 chr9 49668973 49669411 -68193216 + L1MC4 LINE L1 7450 7962 -80 1044 73 0 15 chr9 49669480 49669617 -68193010 + AluSg/x SINE Alu 170 304 -8 2667 170 77 24 chr9 49671091 49671627 -68191000 - L1MB3 LINE L1 -1 6182 5619 1768 201 54 27 chr9 49671627 49672075 -68190552 - MER31B LTR ERV1 0 466 7 3144 214 78 29 chr9 49672081 49673265 -68189362 - L1MB3 LINE L1 -559 5621 4369 46 0 0 0 chr9 49673557 49673603 -68189024 + AT_rich Low_complexity Low_complexity 1 46 0 1954 145 30 0 chr9 49673882 49674179 -68188448 + AluSx SINE Alu 1 306 -6 242 182 45 45 chr9 49674903 49674991 -68187636 - HAL1b LINE L1 0 1348 1261 269 316 33 20 chr9 49675216 49675368 -68187259 - L1MC/D LINE L1 -2053 5755 5602 437 355 55 40 chr9 49676692 49677112 -68185515 - LTR16A LTR ERVL -9 441 16 247 260 73 31 chr9 49677770 49677866 -68184761 + MLT1J LTR MaLR 238 337 -174 302 341 85 27 chr9 49678304 49678527 -68184100 + MIR SINE MIR 11 246 -16 1486 166 13 53 chr9 49678745 49679046 -68183581 - AluJo SINE Alu -13 299 11 326 280 75 19 chr9 49681549 49681656 -68180971 - L2 LINE L2 -12 3301 3189 198 0 0 0 chr9 49681679 49681701 -68180926 + (A)n Simple_repeat Simple_repeat 1 22 0 231 108 0 0 chr9 49681853 49681873 -68180754 + (A)n Simple_repeat Simple_repeat 1 23 -14 2238 80 0 52 chr9 49681873 49682200 -68180427 + AluY SINE Alu 1 310 -1 231 108 0 0 chr9 49682200 49682216 -68180411 + (A)n Simple_repeat Simple_repeat 22 37 0 25 0 0 0 chr9 49682430 49682455 -68180172 + AT_rich Low_complexity Low_complexity 1 25 0 255 254 0 34 chr9 49682748 49682807 -68179820 - LTR67 LTR ERVL -7 550 494 2149 127 0 0 chr9 49683225 49683524 -68179103 - AluSx SINE Alu -10 302 4 1902 138 11 0 chr9 49686186 49686468 -68176159 + AluSg SINE Alu 1 285 -25 351 0 0 0 chr9 49686471 49686510 -68176117 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 189 179 0 26 chr9 49686816 49686855 -68175772 - L2 LINE L2 -3181 133 96 361 317 68 0 chr9 49687608 49687769 -68174858 - L1ME LINE L1 -414 5707 5536 180 0 0 0 chr9 49688073 49688093 -68174534 + (GA)n Simple_repeat Simple_repeat 2 21 0 22 56 0 0 chr9 49688235 49688271 -68174356 + AT_rich Low_complexity Low_complexity 1 36 0 2923 187 21 7 chr9 49688287 49688858 -68173769 - L1MB2 LINE L1 -50 6121 5543 21 57 0 0 chr9 49688906 49688941 -68173686 + AT_rich Low_complexity Low_complexity 1 35 0 22 56 0 0 chr9 49689512 49689548 -68173079 + AT_rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr9 49690007 49690033 -68172594 + AT_rich Low_complexity Low_complexity 1 26 0 273 241 13 0 chr9 49690783 49690862 -68171765 + A-rich Low_complexity Low_complexity 1 80 0 805 129 9 161 chr9 49692593 49692810 -68169817 - MLT1B LTR MaLR -35 355 172 366 264 64 88 chr9 49693526 49693822 -68168805 - L1MB2 LINE L1 -699 5543 5255 512 83 0 0 chr9 49694639 49694711 -68167916 - L1MC2 LINE L1 -12 6332 6261 311 306 54 18 chr9 49696596 49696707 -68165920 - MIR3 SINE MIR -21 187 73 393 326 34 123 chr9 49696817 49697200 -68165427 - L2 LINE L2 -4 3268 2920 1940 159 0 9 chr9 49697504 49697819 -68164808 - AluSx SINE Alu 0 312 1 23 0 0 0 chr9 49698559 49698582 -68164045 + AT_rich Low_complexity Low_complexity 1 23 0 365 0 16 62 chr9 49699202 49699266 -68163361 + (TAAA)n Simple_repeat Simple_repeat 3 63 0 2346 99 0 0 chr9 49700452 49700756 -68161871 + AluSx SINE Alu 1 304 -8 237 403 26 13 chr9 49700779 49700933 -68161694 + L2 LINE L2 2571 2726 -588 182 189 244 33 chr9 49703499 49703589 -68159038 + MIR SINE MIR 91 199 -63 664 187 179 0 chr9 49704962 49705096 -68157531 - MSTB1 LTR MaLR 0 432 275 312 304 148 30 chr9 49706794 49707146 -68155481 - MLT1I LTR MaLR -33 417 22 305 258 11 21 chr9 49707368 49707461 -68155166 + MLT1I LTR MaLR 318 409 0 1769 59 0 5 chr9 49709230 49709451 -68153176 + AluY SINE Alu 80 299 -12 563 340 45 12 chr9 49709660 49709904 -68152723 - LTR33 LTR ERVL -1 520 269 537 293 12 36 chr9 49709910 49710077 -68152550 - LTR33 LTR ERVL -356 165 3 337 254 189 59 chr9 49710650 49710819 -68151808 + MER63A DNA MER1_type 2 192 -18 191 319 21 0 chr9 49712473 49712520 -68150107 + MIR SINE MIR 53 100 -162 * 229 302 45 28 chr9 49712491 49712620 -68150007 - MER5B DNA MER1_type -43 146 5 556 238 163 0 chr9 49712632 49712779 -68149848 - MER5A DNA MER1_type 0 189 19 583 167 12 0 chr9 49712897 49713058 -68149569 - L1PA16 LINE L1 -2 6164 5967 288 0 0 0 chr9 49714949 49714981 -68147646 + (TG)n Simple_repeat Simple_repeat 2 33 0 23 54 0 0 chr9 49715309 49715346 -68147281 + AT_rich Low_complexity Low_complexity 1 37 0 786 186 0 6 chr9 49716782 49716938 -68145689 - L1MC/D LINE L1 -625 5617 5463 2038 97 7 28 chr9 49716943 49717268 -68145359 - AluSq SINE Alu 0 319 1 1459 243 27 33 chr9 49717270 49717759 -68144868 - L1MC/D LINE L1 -837 5309 4824 23 54 0 0 chr9 49717759 49717796 -68144831 + AT_rich Low_complexity Low_complexity 1 37 0 1873 253 81 52 chr9 49718356 49719044 -68143583 - L1ME3A LINE L1 -7 6163 5456 259 314 17 17 chr9 49719990 49720165 -68142462 - L1ME3A LINE L1 -941 5205 5031 435 304 99 58 chr9 49720178 49720573 -68142054 - L1ME3A LINE L1 -1194 4952 4542 320 321 100 7 chr9 49720839 49720979 -68141648 + MLT1K LTR MaLR 333 485 -103 2081 125 0 0 chr9 49721043 49721330 -68141297 + AluSq SINE Alu 12 298 -15 26 64 0 0 chr9 49721699 49721746 -68140881 + AT_rich Low_complexity Low_complexity 1 47 0 953 271 71 64 chr9 49722209 49722630 -68139997 - L2 LINE L2 -5 3308 2885 229 299 39 0 chr9 49722635 49722712 -68139915 - L2 LINE L2 -591 2723 2644 336 125 0 0 chr9 49722876 49722940 -68139687 + (TG)n Simple_repeat Simple_repeat 2 65 0 566 302 262 31 chr9 49722961 49723336 -68139291 - L2 LINE L2 -947 2367 1870 1054 166 90 63 chr9 49723336 49723747 -68138880 + LTR37A LTR ERV1 1 422 -4 566 302 262 31 chr9 49723747 49723821 -68138806 - L2 LINE L2 -1444 1870 1814 401 173 12 0 chr9 49723964 49724045 -68138582 + AluS SINE Alu 1 82 -231 28 29 0 0 chr9 49724354 49724389 -68138238 + AT_rich Low_complexity Low_complexity 1 35 0 358 330 93 21 chr9 49724406 49724600 -68138027 + MIR SINE MIR 54 261 -1 193 277 46 0 chr9 49724739 49724804 -68137823 - MIR SINE MIR -10 252 185 1844 145 48 40 chr9 49724845 49725217 -68137410 - THE1C LTR MaLR 0 375 1 208 268 175 10 chr9 49725229 49725326 -68137301 + MIR3 SINE MIR 73 185 -23 226 301 54 90 chr9 49725426 49725592 -68137035 - MIR3 SINE MIR 0 208 49 322 143 0 29 chr9 49726189 49726259 -68136368 + (TTCC)n Simple_repeat Simple_repeat 2 69 0 186 267 12 35 chr9 49726344 49726430 -68136197 - MER5C DNA MER1_type -200 124 41 185 326 23 35 chr9 49726709 49726795 -68135832 + L2 LINE L2 853 937 -2377 1190 122 11 11 chr9 49726998 49727200 -68135427 + AluSg/x SINE Alu 104 305 0 2301 62 6 38 chr9 49729108 49729428 -68133199 - AluY SINE Alu -1 310 1 260 228 0 25 chr9 49730262 49730341 -68132286 + T-rich Low_complexity Low_complexity 3 79 0 2124 124 92 15 chr9 49780644 49780982 -68081645 - THE1B LTR MaLR 0 364 1 4626 105 2 0 chr9 49780982 49781602 -68081025 - THE1B-int LTR MaLR 0 1580 960 2075 95 105 8 chr9 49781602 49781968 -68080659 - LTR7 LTR ERV1 0 450 1 1479 120 5 0 chr9 49781968 49782177 -68080450 - THE1B-int LTR MaLR -616 964 755 6508 109 5 0 chr9 49782178 49783070 -68079557 - THE1B-int LTR MaLR -684 896 1 2136 126 45 28 chr9 49783070 49783428 -68079199 - THE1B LTR MaLR 0 364 1 2210 117 0 16 chr9 49785465 49785774 -68076853 + AluSp SINE Alu 1 304 -9 1559 171 46 21 chr9 49787726 49787806 -68074821 - MER44D DNA MER2_type -1885 606 529 204 97 0 0 chr9 49787806 49787837 -68074790 + (CA)n Simple_repeat Simple_repeat 2 32 0 1559 171 46 21 chr9 49787837 49788084 -68074543 - MER44D DNA MER2_type -1962 529 1 2172 108 51 17 chr9 49788103 49788455 -68074172 + THE1B LTR MaLR 1 364 0 27 49 0 0 chr9 49788560 49788601 -68074026 + AT_rich Low_complexity Low_complexity 1 41 0 444 156 0 0 chr9 49788923 49789000 -68073627 + MADE1 DNA Mariner 2 78 -2 348 250 139 19 chr9 49789718 49789930 -68072697 - MER106B DNA MER1_type 0 1059 3 5352 101 3 0 chr9 49792873 49793619 -68069008 + L1P LINE L1 1490 2237 -3909 3298 105 0 0 chr9 49793611 49794076 -68068551 + L1P LINE L1 3383 3847 -2299 * 3940 56 0 0 chr9 49794076 49794590 -68068037 + L1PA7 LINE L1 5651 6167 0 359 288 102 11 chr9 49794923 49795100 -68067527 + L1MB3 LINE L1 4737 4929 -1217 2031 128 50 34 chr9 49795353 49795711 -68066916 - THE1B LTR MaLR 0 364 1 11619 93 3 12 chr9 49795711 49797306 -68065321 - THE1B-int LTR MaLR 0 1580 1 2053 140 42 28 chr9 49797306 49797663 -68064964 - THE1B LTR MaLR 0 364 3 2960 242 43 18 chr9 49798394 49799394 -68063233 - L1ME1 LINE L1 -7 6159 5128 234 0 0 0 chr9 49799406 49799432 -68063195 + (TA)n Simple_repeat Simple_repeat 1 26 0 2109 118 3 0 chr9 49799433 49799720 -68062907 - AluSp SINE Alu -24 289 2 571 202 54 19 chr9 49799767 49800012 -68062615 - MER39 LTR ERV1 0 729 545 962 208 102 0 chr9 49800067 49800293 -68062334 - LTR48 LTR ERV1 -338 449 201 1498 199 22 26 chr9 49800293 49800605 -68062022 + AluJo SINE Alu 2 312 0 709 154 31 6 chr9 49800607 49800769 -68061858 + GA-rich Low_complexity Low_complexity 3 168 0 713 197 191 11 chr9 49800769 49800947 -68061680 - LTR48 LTR ERV1 -572 215 6 333 109 0 0 chr9 49800972 49801027 -68061600 + (TG)n Simple_repeat Simple_repeat 2 56 0 38 0 0 0 chr9 49801088 49801126 -68061501 + AT_rich Low_complexity Low_complexity 1 38 0 2525 50 0 7 chr9 49801180 49801483 -68061144 - AluY SINE Alu -10 301 1 327 85 0 0 chr9 49801522 49801569 -68061058 + (TG)n Simple_repeat Simple_repeat 2 48 0 237 351 84 7 chr9 49801724 49801878 -68060749 - L2 LINE L2 -2919 395 230 2661 231 67 24 chr9 49802024 49802139 -68060488 + L1MB3 LINE L1 5310 5419 -764 1812 136 0 4 chr9 49802139 49802404 -68060223 + AluSx SINE Alu 49 312 0 2661 231 67 24 chr9 49802404 49803127 -68059500 + L1MB3 LINE L1 5419 6181 -2 361 309 35 73 chr9 49803227 49803544 -68059083 + L1MC/D LINE L1 5497 5801 -2007 23 65 0 39 chr9 49803710 49803787 -68058840 + AT_rich Low_complexity Low_complexity 1 74 0 2113 72 0 0 chr9 49803850 49804129 -68058498 - L1PA5 LINE L1 -1 6153 5875 2609 55 0 0 chr9 49804190 49804501 -68058126 - AluY SINE Alu 0 311 1 208 262 117 21 chr9 49804647 49804792 -68057835 + MIR SINE MIR 66 224 -38 382 274 20 17 chr9 49805304 49805427 -68057200 + MIR SINE MIR 50 167 -62 21 0 0 0 chr9 49805497 49805518 -68057109 + AT_rich Low_complexity Low_complexity 1 21 0 220 296 288 15 chr9 49806002 49806134 -68056493 - MIR SINE MIR -21 241 74 280 199 128 99 chr9 49806676 49806735 -68055892 + MLT1J LTR MaLR 336 392 -119 3508 231 52 40 chr9 49806735 49806812 -68055815 - MER45B DNA AcHobo -541 1040 965 2312 72 0 7 chr9 49806812 49807116 -68055511 + AluY SINE Alu 1 302 -9 3508 231 52 40 chr9 49807116 49808062 -68054565 - MER45B DNA AcHobo -616 965 5 280 199 128 99 chr9 49808062 49808143 -68054484 + MLT1J LTR MaLR 392 480 -31 21 36 0 0 chr9 49808801 49808829 -68053798 + AT_rich Low_complexity Low_complexity 1 28 0 230 368 96 24 chr9 49808916 49809041 -68053586 + L2 LINE L2 3127 3260 -12 246 213 0 0 chr9 49809977 49810024 -68052603 + L1 LINE L1 5305 5351 -795 755 273 20 5 chr9 49810564 49810762 -68051865 - MLT1A1 LTR MaLR -2 372 172 4126 158 28 1 chr9 49810799 49811526 -68051101 - L1MA9 LINE L1 -260 6052 5307 10885 202 34 32 chr9 49811647 49814487 -68048140 - L1MA9 LINE L1 -1149 4997 2153 882 150 7 13 chr9 49814510 49814663 -68047964 - MLT1A1 LTR MaLR -213 152 1 202 274 92 105 chr9 49814928 49815081 -68047546 - L2 LINE L2 -4 3309 3159 37 0 0 0 chr9 49816145 49816182 -68046445 + AT_rich Low_complexity Low_complexity 1 37 0 2366 85 3 0 chr9 49816981 49817276 -68045351 - AluSx SINE Alu -16 296 1 504 253 32 89 chr9 49817353 49817417 -68045210 - L1MC4 LINE L1 -1208 6600 6534 1877 140 0 3 chr9 49817417 49817722 -68044905 - AluJb SINE Alu 0 304 1 504 253 32 89 chr9 49817722 49818005 -68044622 - L1MC4 LINE L1 -1274 6534 6366 2475 36 0 3 chr9 49818621 49818978 -68043649 - L1PA5 LINE L1 0 6154 5852 701 36 0 0 chr9 49818978 49819061 -68043566 + L1P LINE L1 4167 4249 -1897 5067 78 2 66 chr9 49819721 49820508 -68042119 + L1PA8 LINE L1 5436 6172 0 258 331 58 13 chr9 49820564 49820718 -68041909 + L1ME LINE L1 5489 5649 -515 336 271 81 86 chr9 49821290 49821662 -68040965 - L1ME4a LINE L1 -207 5914 5545 4908 35 0 12 chr9 49821865 49822466 -68040161 + L1PA5 LINE L1 5560 6153 -1 27 0 0 0 chr9 49822722 49822749 -68039878 + AT_rich Low_complexity Low_complexity 1 27 0 2037 129 0 3 chr9 49822776 49823062 -68039565 + AluSx SINE Alu 1 285 -27 24 0 0 0 chr9 49824257 49824281 -68038346 + AT_rich Low_complexity Low_complexity 1 24 0 957 299 64 46 chr9 49825806 49826372 -68036255 + L2 LINE L2 2090 2665 -649 457 244 86 81 chr9 49826448 49826682 -68035945 - L1MC5 LINE L1 -55 7906 7672 534 203 36 124 chr9 49826723 49827053 -68035574 - L1MC5 LINE L1 -401 7560 7260 799 259 97 77 chr9 49827242 49828697 -68033930 - L1MC5 LINE L1 -774 7187 5704 386 385 38 38 chr9 49828697 49829285 -68033342 + L2 LINE L2 2725 3311 -2 223 402 8 8 chr9 49830595 49830717 -68031910 - MER5A DNA MER1_type -33 156 35 465 300 144 0 chr9 49830813 49830973 -68031654 - MER5A DNA MER1_type -5 184 2 295 207 8 174 chr9 49831025 49831146 -68031481 + MER5B DNA MER1_type 78 178 0 297 0 0 0 chr9 49831349 49831382 -68031245 + (TG)n Simple_repeat Simple_repeat 2 34 0 24 0 0 0 chr9 49831601 49831625 -68031002 + AT_rich Low_complexity Low_complexity 1 24 0 1505 296 64 37 chr9 49831984 49832993 -68029634 + L1MEc LINE L1 19 1055 -5341 1447 227 95 8 chr9 49833019 49833526 -68029101 - L1MEc LINE L1 -5099 1297 747 3866 193 39 36 chr9 49833538 49834865 -68027762 - L1MA9 LINE L1 -22 6290 4848 1735 273 85 20 chr9 49834862 49835463 -68027164 - L1MEc LINE L1 -5648 748 109 * 24 0 0 0 chr9 49835839 49835863 -68026764 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr9 49836166 49836194 -68026433 + AT_rich Low_complexity Low_complexity 1 28 0 543 320 68 5 chr9 49837608 49837830 -68024797 - MIR SINE MIR -24 238 3 258 292 0 0 chr9 49837868 49837933 -68024694 + GA-rich Low_complexity Low_complexity 3 67 0 230 0 0 32 chr9 49838229 49838260 -68024367 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 288 316 173 6 chr9 49840616 49840784 -68021843 + L2 LINE L2 2153 2348 -966 1031 226 9 9 chr9 49841033 49841250 -68021377 - MER20 DNA MER1_type -1 218 2 935 262 43 23 chr9 49842572 49842828 -68019799 + MIR SINE MIR 2 262 0 1168 185 86 14 chr9 49844887 49845179 -68017448 + MER33 DNA MER1_type 1 313 -11 223 83 21 21 chr9 49845333 49845381 -68017246 + (CAAAAA)n Simple_repeat Simple_repeat 1 48 0 254 282 0 14 chr9 49846067 49846138 -68016489 + MLT2E LTR ERVL 504 573 -55 21 0 0 0 chr9 49846822 49846843 -68015784 + AT_rich Low_complexity Low_complexity 1 21 0 521 30 0 0 chr9 49846924 49846990 -68015637 - MER41A LTR ERV1 -88 466 401 42 71 0 0 chr9 49847084 49847168 -68015459 + AT_rich Low_complexity Low_complexity 1 84 0 225 231 19 0 chr9 49847203 49847255 -68015372 - MIR SINE MIR -92 170 118 784 206 14 51 chr9 49848125 49848339 -68014288 - L1MB7 LINE L1 -19 6165 5960 24 0 0 0 chr9 49848552 49848576 -68014051 + AT_rich Low_complexity Low_complexity 1 24 0 763 299 41 0 chr9 49849088 49849309 -68013318 + MIR SINE MIR 16 245 -17 223 314 83 26 chr9 49849427 49849583 -68013044 - MIR SINE MIR -9 253 89 21 36 0 0 chr9 49850258 49850286 -68012341 + AT_rich Low_complexity Low_complexity 1 28 0 376 233 93 53 chr9 49850288 49850321 -68012306 - LTR33 LTR ERVL -8 513 483 2099 138 30 25 chr9 49850321 49850683 -68011944 - THE1B LTR MaLR 0 364 1 376 233 93 53 chr9 49850683 49850799 -68011828 - LTR33 LTR ERVL -38 483 358 323 363 79 17 chr9 49850883 49851123 -68011504 - MIR SINE MIR -1 261 7 436 349 43 24 chr9 49852039 49852294 -68010333 + MIR SINE MIR 2 261 -1 180 0 0 0 chr9 49853201 49853221 -68009406 + (A)n Simple_repeat Simple_repeat 1 20 0 24 0 0 0 chr9 49853410 49853434 -68009193 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr9 49853481 49853503 -68009124 + AT_rich Low_complexity Low_complexity 1 22 0 7189 109 25 49 chr9 49853544 49854805 -68007822 + Tigger3b DNA MER2_type 1 1231 0 209 200 105 57 chr9 49855918 49856023 -68006604 - MER5C DNA MER1_type -122 202 93 3566 235 62 63 chr9 49856818 49859573 -68003054 - L1ME1 LINE L1 -63 6103 3366 369 145 0 0 chr9 49859602 49859664 -68002963 + MSTB LTR MaLR 240 301 -125 476 274 18 0 chr9 49859703 49859816 -68002811 - MER58B DNA MER1_type 0 341 227 660 234 39 71 chr9 49859876 49860286 -68002341 - L1ME1 LINE L1 -2803 3343 2947 * 986 277 83 11 chr9 49860265 49860809 -68001818 - L1M1 LINE L1 -5445 1661 10 2146 211 25 4 chr9 49860828 49861552 -68001075 - L1M4 LINE L1 -569 6103 5365 1808 180 30 32 chr9 49861552 49861585 -68001042 + MSTB LTR MaLR 1 33 -393 2214 107 0 7 chr9 49861585 49861884 -68000743 - AluSg SINE Alu -13 297 1 1808 180 30 32 chr9 49861884 49862223 -68000404 + MSTB LTR MaLR 33 372 -54 1828 177 35 14 chr9 49862228 49862595 -68000032 - THE1C LTR MaLR 0 375 1 8831 132 35 39 chr9 49862595 49864178 -67998449 - THE1C-int LTR MaLR 0 1580 4 1490 158 57 32 chr9 49864181 49864497 -67998130 - THE1C LTR MaLR 0 375 52 303 154 19 0 chr9 49864491 49864543 -67998084 + MSTB LTR MaLR 376 428 -4 * 688 299 63 23 chr9 49864547 49864848 -67997779 - L1M4 LINE L1 -1275 5369 5057 15149 158 40 18 chr9 49864864 49869026 -67993601 - L1MA2 LINE L1 0 7723 3369 2791 7 0 3 chr9 49869026 49869336 -67993291 - AluYa5 SINE Alu -2 309 1 15149 158 40 18 chr9 49869336 49872059 -67990568 - L1MA2 LINE L1 -4354 3369 708 505 203 25 25 chr9 49872056 49872174 -67990453 - L1MA2 LINE L1 -7431 134 17 * 3599 274 89 23 chr9 49872174 49872493 -67990134 - L1M4 LINE L1 -1577 5067 4771 236 30 30 0 chr9 49872493 49872526 -67990101 + (TG)n Simple_repeat Simple_repeat 2 35 0 3599 274 89 23 chr9 49872526 49873967 -67988660 - L1M4 LINE L1 -1873 4771 3190 1260 233 22 6 chr9 49873955 49874277 -67988350 - L1M4 LINE L1 -4956 1690 1364 * 542 317 40 24 chr9 49874643 49874892 -67987735 - L1M4 LINE L1 -6289 253 1 1879 227 75 11 chr9 49874903 49875607 -67987020 - L1MEc LINE L1 -3175 3040 2292 437 291 28 0 chr9 49875614 49875796 -67986831 - L1MEc LINE L1 -4106 2290 2104 467 385 37 16 chr9 49875969 49876343 -67986284 - L1MEc LINE L1 -5835 561 180 3036 160 16 2 chr9 49876543 49877048 -67985579 + MER41E LTR ERV1 1 512 0 282 309 0 0 chr9 49877409 49877493 -67985134 - MIR SINE MIR -10 252 169 21 0 0 0 chr9 49878481 49878502 -67984125 + AT_rich Low_complexity Low_complexity 1 21 0 10873 208 27 30 chr9 49878502 49886309 -67976318 - L1PB2 LINE L1 -2 6865 3 187 390 9 19 chr9 49886398 49886503 -67976124 - MIR SINE MIR -62 146 43 238 299 28 90 chr9 49886968 49887112 -67975515 - MIR SINE MIR -72 190 56 207 206 32 16 chr9 49887390 49887453 -67975174 + (TAAA)n Simple_repeat Simple_repeat 1 64 0 23 33 0 0 chr9 49887807 49887837 -67974790 + AT_rich Low_complexity Low_complexity 1 30 0 1452 201 37 70 chr9 49888303 49888706 -67973921 + MLT1B LTR MaLR 1 390 0 3817 191 32 21 chr9 49888927 49889975 -67972652 + L1MB2 LINE L1 4577 5693 -478 2423 143 10 0 chr9 49889975 49890361 -67972266 + MLT1B LTR MaLR 1 390 0 3817 191 32 21 chr9 49890361 49890846 -67971781 + L1MB2 LINE L1 5693 6171 0 1170 160 35 31 chr9 49890853 49890884 -67971743 + L1MA4 LINE L1 6039 6068 -232 453 143 13 0 chr9 49890884 49890961 -67971666 - MADE1 DNA Mariner -2 78 1 1170 160 35 31 chr9 49890961 49891185 -67971442 + L1MA4 LINE L1 6068 6295 -5 677 222 33 0 chr9 49891317 49891497 -67971130 - MER53 DNA DNA 0 189 4 27 0 0 0 chr9 49891517 49891544 -67971083 + AT_rich Low_complexity Low_complexity 1 27 0 183 139 0 0 chr9 49891871 49891907 -67970720 + (CA)n Simple_repeat Simple_repeat 2 37 0 273 248 215 41 chr9 49892075 49892196 -67970431 + MIR SINE MIR 65 206 -56 857 213 12 0 chr9 49892384 49892553 -67970074 + FRAM SINE Alu 3 173 -3 22 70 0 0 chr9 49892941 49892984 -67969643 + AT_rich Low_complexity Low_complexity 1 43 0 309 270 147 60 chr9 49893370 49893655 -67968972 + L1MC/D LINE L1 5255 5564 -2431 181 225 0 42 chr9 49893867 49893938 -67968689 + (TATATG)n Simple_repeat Simple_repeat 5 72 0 1227 253 24 40 chr9 49894858 49895238 -67967389 + MLT1A2 LTR MaLR 1 374 0 272 267 23 122 chr9 49896114 49896245 -67966382 + MER90 LTR ERV1 489 606 -8 1690 194 46 0 chr9 49896501 49896830 -67965797 + MER2 DNA MER2_type 1 344 0 21 0 0 0 chr9 49896904 49896925 -67965702 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr9 49897026 49897051 -67965576 + AT_rich Low_complexity Low_complexity 1 25 0 1401 144 0 0 chr9 49897113 49897315 -67965312 - Tigger3(Golem) DNA MER2_type 0 3038 2837 488 230 0 44 chr9 49897312 49897425 -67965202 - Tigger3(Golem) DNA MER2_type -2886 143 36 * 21 82 0 0 chr9 49897672 49897721 -67964906 + AT_rich Low_complexity Low_complexity 1 49 0 359 264 11 11 chr9 49898194 49898285 -67964342 + MIR SINE MIR 62 152 -110 1218 220 33 63 chr9 49899910 49900274 -67962353 + MLT1B LTR MaLR 22 374 -16 351 289 132 0 chr9 49900720 49900841 -67961786 + L3 LINE CR1 1326 1462 -115 21 0 0 0 chr9 49901485 49901506 -67961121 + AT_rich Low_complexity Low_complexity 1 21 0 416 324 30 31 chr9 49901805 49902060 -67960567 + MLT1I LTR MaLR 54 279 -130 2514 244 175 7 chr9 49902397 49903174 -67959453 + L1MC4a LINE L1 16 995 -5545 508 262 50 3 chr9 49903176 49903368 -67959259 + L1MC4a LINE L1 1359 1562 -4978 4642 252 58 44 chr9 49903390 49905346 -67957281 + L1MC4a LINE L1 2663 4646 -1894 22 35 0 0 chr9 49906260 49906289 -67956338 + AT_rich Low_complexity Low_complexity 1 29 0 210 37 0 0 chr9 49906509 49906536 -67956091 + (GA)n Simple_repeat Simple_repeat 1 27 0 288 167 35 114 chr9 49906542 49906656 -67955971 + L1MC4 LINE L1 7933 8037 -5 34 42 0 0 chr9 49907434 49907482 -67955145 + AT_rich Low_complexity Low_complexity 1 48 0 21 36 0 0 chr9 49908702 49908730 -67953897 + AT_rich Low_complexity Low_complexity 1 28 0 898 306 58 26 chr9 49911172 49911669 -67950958 + L1MC4a LINE L1 5893 6405 -1797 2129 251 72 33 chr9 49911766 49912560 -67950067 - L1MC4a LINE L1 -36 7772 6948 499 205 5 32 chr9 49912581 49912766 -67949861 + CT-rich Low_complexity Low_complexity 1 180 0 785 159 0 23 chr9 49912825 49912957 -67949670 + FLAM_C SINE Alu 1 129 -14 251 279 125 0 chr9 49912963 49913067 -67949560 - L1MCb LINE L1 -4244 2320 2204 447 157 0 11 chr9 49913108 49913197 -67949430 - L1MCb LINE L1 -4467 2097 2010 322 73 0 0 chr9 49913197 49913238 -67949389 - 5S rRNA rRNA -79 42 2 2855 237 49 18 chr9 49913238 49913807 -67948820 - L1MCb LINE L1 -4541 2023 1473 735 52 0 0 chr9 49913807 49913903 -67948724 + (CTATT)n Simple_repeat Simple_repeat 5 100 0 2855 237 49 18 chr9 49913903 49914662 -67947965 - L1MCb LINE L1 -5091 1473 558 2711 182 27 44 chr9 49914724 49915273 -67947354 - MER44D DNA MER2_type 0 605 11 691 313 70 44 chr9 49915325 49915871 -67946756 - L1MCb LINE L1 -5483 562 3 521 192 108 15 chr9 49915895 49916025 -67946602 - L1MD3 LINE L1 -968 7027 6886 * 1041 200 44 20 chr9 49916018 49916268 -67946359 - L1MC4a LINE L1 -1299 6509 6254 * 1325 267 59 8 chr9 49916263 49916834 -67945793 - L1MCc LINE L1 -4887 1536 1083 365 153 14 0 chr9 49917001 49917073 -67945554 + CT-rich Low_complexity Low_complexity 1 73 0 1675 117 19 19 chr9 49917073 49917329 -67945298 - AluSq SINE Alu -15 298 43 485 80 45 0 chr9 49917352 49917440 -67945187 + GA-rich Low_complexity Low_complexity 2 93 0 24 0 0 0 chr9 49918365 49918389 -67944238 + AT_rich Low_complexity Low_complexity 1 24 0 2268 98 0 0 chr9 49919255 49919550 -67943077 - AluSc SINE Alu -14 295 1 363 111 0 0 chr9 49919553 49919607 -67943020 + MADE1 DNA Mariner 27 80 0 387 298 99 28 chr9 49920409 49920550 -67942077 + MIR SINE MIR 9 159 -103 3410 179 79 10 chr9 49920753 49921439 -67941188 + MER44D DNA MER2_type 1 605 0 1898 212 100 33 chr9 49921870 49922451 -67940176 + L1MC4 LINE L1 7109 7728 -314 219 238 63 0 chr9 49922480 49922543 -67940084 + MIR SINE MIR 137 203 -59 240 245 82 10 chr9 49922677 49922775 -67939852 - MER46C DNA MER2_type -148 190 86 369 62 0 0 chr9 49922883 49922931 -67939696 + (ATG)n Simple_repeat Simple_repeat 3 50 0 2364 81 0 0 chr9 49922957 49923252 -67939375 + AluSc SINE Alu 1 295 -14 589 269 38 25 chr9 49923890 49924050 -67938577 - L2 LINE L2 0 3313 3152 1614 175 97 24 chr9 49924058 49924522 -67938105 - LTR54B LTR ERV1 0 498 1 1937 232 105 64 chr9 49924543 49925361 -67937266 - MER21B LTR ERV1 -11 852 1 330 26 0 0 chr9 49925628 49925667 -67936960 + (CA)n Simple_repeat Simple_repeat 2 40 0 21 71 0 0 chr9 49925796 49925838 -67936789 + AT_rich Low_complexity Low_complexity 1 42 0 969 98 0 0 chr9 49927091 49927214 -67935413 - AluSq/x SINE Alu -189 123 1 426 330 78 5 chr9 49927713 49927904 -67934723 - MIR SINE MIR -56 206 2 1013 263 119 36 chr9 49928054 49928340 -67934287 - L1MDa LINE L1 -4764 1776 1515 3015 75 114 2 chr9 49928340 49928777 -67933850 + LTR19A LTR ERV1 1 486 0 1013 263 119 36 chr9 49928777 49929213 -67933414 - L1MDa LINE L1 -5025 1515 994 555 289 115 26 chr9 49929338 49929527 -67933100 - L1MDa LINE L1 -5771 759 537 207 0 0 0 chr9 49929527 49929550 -67933077 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 555 289 115 26 chr9 49929550 49929630 -67932997 - L1MDa LINE L1 -5993 537 466 1488 261 108 41 chr9 49929682 49930369 -67932258 - L1MEc LINE L1 -3159 3056 2416 1233 223 8 4 chr9 49930369 49930607 -67932020 - MER8 DNA MER2_type 0 239 1 1488 261 108 41 chr9 49930607 49931285 -67931342 - L1MEc LINE L1 -3799 2416 1639 3006 237 45 33 chr9 49931302 49932257 -67930370 - L1ME1 LINE L1 -5 6230 5267 1280 163 23 5 chr9 49932259 49932474 -67930153 - AluJb SINE Alu -7 305 87 1757 258 32 18 chr9 49932524 49933121 -67929506 - L1ME1 LINE L1 -1018 5197 4593 492 342 42 37 chr9 49933340 49933744 -67928883 - L1ME1 LINE L1 -5946 450 45 507 257 78 39 chr9 49933953 49934339 -67928288 - MLT1J2 LTR MaLR -2 448 1 2023 133 128 13 chr9 49935512 49935894 -67926733 + MSTA LTR MaLR 3 428 0 270 261 109 7 chr9 49935945 49936083 -67926544 - L1M4 LINE L1 -2098 4048 3897 1876 156 7 0 chr9 49936124 49936419 -67926208 - AluSx SINE Alu -15 297 1 21 36 0 0 chr9 49937385 49937413 -67925214 + AT_rich Low_complexity Low_complexity 1 28 0 201 74 0 0 chr9 49937554 49937581 -67925046 + (TG)n Simple_repeat Simple_repeat 2 28 0 1400 199 21 97 chr9 49937618 49938040 -67924587 + MLT1B LTR MaLR 1 390 0 337 611 11 0 chr9 49938153 49938328 -67924299 + polypyrimidine Low_complexity Low_complexity 4 180 0 303 246 8 17 chr9 49938322 49938440 -67924187 + CT-rich Low_complexity Low_complexity 2 118 0 * 186 287 84 56 chr9 49938587 49938730 -67923897 + L2 LINE L2 3167 3313 0 369 0 0 0 chr9 49940993 49941034 -67921593 + (TA)n Simple_repeat Simple_repeat 2 42 0 185 360 0 0 chr9 49941412 49941462 -67921165 - L2 LINE L2 -4 3268 3219 2217 110 0 3 chr9 49942244 49942552 -67920075 + AluSc SINE Alu 1 307 -2 21 0 0 0 chr9 49944900 49944921 -67917706 + AT_rich Low_complexity Low_complexity 1 21 0 30 59 0 0 chr9 49945037 49945088 -67917539 + AT_rich Low_complexity Low_complexity 1 51 0 4453 122 50 3 chr9 49945200 49945905 -67916722 + Tigger4(Zombi) DNA MER2_type 1338 2075 -656 3062 122 8 12 chr9 49945905 49946387 -67916240 + Tigger4(Zombi) DNA MER2_type 2252 2731 0 204 67 0 0 chr9 49947031 49947061 -67915566 + (TG)n Simple_repeat Simple_repeat 1 30 0 628 189 0 18 chr9 49947489 49947600 -67915027 + FLAM_C SINE Alu 3 111 -32 2289 98 38 0 chr9 49947693 49948040 -67914587 - L1PB1 LINE L1 -1 6150 5791 268 208 0 62 chr9 49948054 49948150 -67914477 - L1MC4 LINE L1 -1339 6703 6614 228 234 0 43 chr9 49948070 49948164 -67914463 + L1MC4 LINE L1 6614 6703 -1339 * 3588 119 24 14 chr9 49948162 49948875 -67913752 - L1P5 LINE L1 -361 5790 5069 * 15867 175 58 9 chr9 49948870 49954587 -67908040 - L1PBa LINE L1 -865 5997 1 2197 167 74 0 chr9 49954605 49954995 -67907632 - MSTA LTR MaLR -9 419 1 24 0 0 0 chr9 49955017 49955041 -67907586 + AT_rich Low_complexity Low_complexity 1 24 0 1255 221 29 52 chr9 49955186 49955494 -67907133 - AluJb SINE Alu -10 302 2 25 0 0 0 chr9 49955835 49955860 -67906767 + AT_rich Low_complexity Low_complexity 1 25 0 1555 279 55 47 chr9 49955956 49956460 -67906167 - MLT1E LTR MaLR -8 585 74 1473 241 45 11 chr9 49956460 49956842 -67905785 - MLT2C1 LTR ERVL -2 395 1 1555 279 55 47 chr9 49956842 49956915 -67905712 - MLT1E LTR MaLR -519 74 3 32 0 0 0 chr9 49956929 49956961 -67905666 + AT_rich Low_complexity Low_complexity 1 32 0 192 40 0 0 chr9 49957267 49957292 -67905335 + (CCCCCT)n Simple_repeat Simple_repeat 3 27 0 21 0 0 0 chr9 49959310 49959331 -67903296 + AT_rich Low_complexity Low_complexity 1 21 0 201 322 0 0 chr9 49960324 49960383 -67902244 + (CATATA)n Simple_repeat Simple_repeat 4 62 0 236 222 0 19 chr9 49960620 49960674 -67901953 - L1MC/D LINE L1 -2163 5645 5593 495 286 122 17 chr9 49960789 49961512 -67901115 + L1M4c LINE L1 2298 3108 -3274 2531 247 32 44 chr9 49961634 49962889 -67899738 - L1ME1 LINE L1 -151 6015 4768 1806 146 16 36 chr9 49962889 49963237 -67899390 - MER4A LTR ERV1 0 664 262 535 151 0 66 chr9 49963237 49963343 -67899284 - MER4A LTR ERV1 -565 99 1 1493 232 55 55 chr9 49963343 49963924 -67898703 - L1ME1 LINE L1 -1375 4771 4188 186 43 0 0 chr9 49963924 49963947 -67898680 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1493 232 55 55 chr9 49963947 49964004 -67898623 - L1ME1 LINE L1 -1957 4189 4133 668 211 0 15 chr9 49964039 49964172 -67898455 + L1ME3A LINE L1 18 148 -6392 988 285 90 40 chr9 49964185 49964561 -67898066 + L1ME3A LINE L1 202 596 -5944 296 208 13 13 chr9 49964593 49964670 -67897957 + L1MD2 LINE L1 6058 6134 -225 486 263 40 13 chr9 49964675 49964827 -67897800 + L1MD2 LINE L1 6191 6346 -13 799 221 100 35 chr9 49964854 49965085 -67897542 - MSTC LTR MaLR 0 428 183 2271 100 0 10 chr9 49965147 49965456 -67897171 + AluSc SINE Alu 1 306 -3 321 188 0 14 chr9 49965465 49965534 -67897093 - MSTC LTR MaLR -247 127 60 485 300 40 15 chr9 49965575 49965978 -67896649 + L1ME3A LINE L1 3283 3695 -2845 505 298 80 69 chr9 49966332 49966866 -67895761 + L1ME3A LINE L1 3915 4442 -2098 582 318 81 7 chr9 49966936 49967342 -67895285 + L1ME3A LINE L1 4467 4902 -1638 688 221 57 13 chr9 49967357 49967515 -67895112 + MER5A DNA MER1_type 25 189 0 552 282 115 4 chr9 49967549 49967783 -67894844 + L1ME3A LINE L1 6097 6356 -208 432 303 80 54 chr9 49967941 49968419 -67894208 + HAL1 LINE L1 1238 1727 -780 195 42 0 0 chr9 49968487 49968511 -67894116 + (TGAA)n Simple_repeat Simple_repeat 2 25 0 198 422 9 9 chr9 49968949 49969065 -67893562 - MIR3 SINE MIR -50 158 43 252 203 0 31 chr9 49969486 49969550 -67893077 - MIR SINE MIR -119 143 82 1435 229 52 17 chr9 49969607 49970026 -67892601 + MER63B DNA MER1_type 1 434 -2 1637 172 29 16 chr9 49970127 49970435 -67892192 + AluJo SINE Alu 1 312 0 276 379 20 39 chr9 49971550 49971703 -67890924 + L3 LINE CR1 1370 1519 -58 202 363 102 32 chr9 49971951 49972108 -67890519 + MIR3 SINE MIR 30 197 -11 210 302 32 0 chr9 49974263 49974326 -67888301 + MIR SINE MIR 34 98 -110 25 83 0 0 chr9 49974483 49974543 -67888084 + AT_rich Low_complexity Low_complexity 1 60 0 16257 133 26 14 chr9 49974733 49976887 -67885740 - Tigger2 DNA MER2_type 0 2718 523 1778 168 0 3 chr9 49976887 49977195 -67885432 - AluJo SINE Alu 0 307 1 16257 133 26 14 chr9 49977195 49977722 -67884905 - Tigger2 DNA MER2_type -2195 523 4 796 102 86 0 chr9 49978085 49978213 -67884414 - MER85 DNA T2_type 0 139 1 301 364 23 8 chr9 49978425 49978554 -67884073 + MIR3 SINE MIR 14 144 -64 238 224 17 0 chr9 49978680 49978738 -67883889 + GA-rich Low_complexity Low_complexity 4 62 0 231 330 66 9 chr9 49979076 49979182 -67883445 + MIR SINE MIR 77 188 -74 1323 139 0 27 chr9 49979556 49979813 -67882814 - AluSg/x SINE Alu 0 346 96 738 317 94 30 chr9 49980522 49980853 -67881774 + MER115 DNA AcHobo 100 451 -242 1614 183 79 101 chr9 49981008 49981270 -67881357 + LTR55 LTR ERV 1 267 -281 2372 113 21 16 chr9 49981270 49981643 -67880984 + THE1C LTR MaLR 1 375 0 1614 183 79 101 chr9 49981643 49981937 -67880690 + LTR55 LTR ERV 267 545 -3 1270 245 41 10 chr9 49981989 49982303 -67880324 + MER58B DNA MER1_type 7 330 -11 1560 202 0 17 chr9 49982440 49982727 -67879900 + AluJb SINE Alu 1 282 -30 657 0 0 0 chr9 49982729 49982802 -67879825 + (AATAG)n Simple_repeat Simple_repeat 3 75 0 252 276 0 0 chr9 49984221 49984297 -67878330 - L1M4 LINE L1 -867 5279 5204 1181 267 106 71 chr9 49984734 49985434 -67877193 - L1MC4 LINE L1 -615 7427 6704 1014 292 81 41 chr9 49985466 49985908 -67876719 + MLT1E LTR MaLR 15 474 -119 2134 179 7 70 chr9 49986715 49987174 -67875453 + LOR1b LTR ERV1 1 430 -31 2412 172 6 40 chr9 49987230 49987707 -67874920 + LOR1b LTR ERV1 1 461 0 2059 195 101 54 chr9 49988081 49988696 -67873931 - LTR48B LTR ERV1 0 644 1 48 32 0 0 chr9 49988696 49988758 -67873869 + AT_rich Low_complexity Low_complexity 1 62 0 1566 297 72 10 chr9 49988796 49988992 -67873635 + L1ME1 LINE L1 2650 2832 -3314 13472 141 36 14 chr9 49988992 49990841 -67871786 + Tigger1 DNA MER2_type 2 1916 -502 1822 157 7 0 chr9 49990841 49991127 -67871500 + AluSx SINE Alu 1 288 -24 13472 141 36 14 chr9 49991127 49991642 -67870985 + Tigger1 DNA MER2_type 1916 2418 0 1566 297 72 10 chr9 49991642 49992512 -67870115 + L1ME1 LINE L1 2832 3782 -2364 288 243 28 108 chr9 49992586 49992800 -67869827 + L1ME1 LINE L1 5010 5206 -940 232 290 39 45 chr9 49992788 49992943 -67869684 + L1ME1 LINE L1 6009 6162 -4 * 5031 147 15 26 chr9 49993599 49995330 -67867297 - L1PA15 LINE L1 -1 6164 4419 1862 283 59 10 chr9 49995546 49996427 -67866200 + L1M4 LINE L1 2744 3667 -2479 23 108 0 0 chr9 49996451 49996544 -67866083 + AT_rich Low_complexity Low_complexity 1 93 0 204 286 336 0 chr9 49997009 49997128 -67865499 + MER5A DNA MER1_type 29 187 -2 595 367 38 42 chr9 49998176 49998672 -67863955 + L3 LINE CR1 237 730 -847 23 33 0 0 chr9 49999234 49999264 -67863363 + AT_rich Low_complexity Low_complexity 1 30 0 297 360 33 13 chr9 50002152 50002305 -67860322 - MIR SINE MIR -7 255 100 879 258 126 9 chr9 50003132 50003494 -67859133 - L1MC4 LINE L1 -136 7677 7282 1821 118 37 47 chr9 50003692 50003989 -67858638 - AluSg SINE Alu -16 294 1 2784 216 101 24 chr9 50004025 50004991 -67857636 - L1MB7 LINE L1 -36 6148 5108 1661 249 60 39 chr9 50004978 50005517 -67857110 - L1MB7 LINE L1 -3034 3112 2551 * 4253 62 0 0 chr9 50005517 50006051 -67856576 + L1PA7 LINE L1 5614 6147 -7 1661 249 60 39 chr9 50006051 50006263 -67856364 - L1MB7 LINE L1 -3595 2551 2345 1663 137 8 15 chr9 50006489 50006751 -67855876 + AluSx SINE Alu 41 300 -12 2070 115 7 3 chr9 50006772 50007067 -67855560 + AluSg SINE Alu 1 296 -14 787 160 0 0 chr9 50007451 50007582 -67855045 - FLAM_C SINE Alu -2 131 1 21 0 0 0 chr9 50007736 50007757 -67854870 + AT_rich Low_complexity Low_complexity 1 21 0 2135 198 56 112 chr9 50009701 50010122 -67852505 + LTR8A LTR ERV1 3 251 -371 1777 184 0 3 chr9 50010122 50010416 -67852211 - AluJo SINE Alu -17 295 3 2135 198 56 112 chr9 50010416 50010743 -67851884 + LTR8A LTR ERV1 251 595 -27 505 257 142 18 chr9 50010824 50011137 -67851490 - LTR16C LTR ERVL 0 491 98 348 323 150 3 chr9 50011448 50011761 -67850866 + L1ME3A LINE L1 2424 2782 -3364 1223 186 144 0 chr9 50011847 50012111 -67850516 - MER7A DNA MER2_type -44 302 3 2370 127 35 28 chr9 50012753 50013178 -67849449 + MSTA LTR MaLR 1 428 0 305 140 0 0 chr9 50014220 50014270 -67848357 + Alu SINE Alu 246 295 -5 487 284 14 28 chr9 50015271 50015482 -67847145 + L1ME3A LINE L1 4887 5094 -1052 548 301 11 11 chr9 50015585 50015761 -67846866 + LTR16A1 LTR ERVL 282 457 0 1095 269 107 43 chr9 50015764 50016366 -67846261 + L1ME3A LINE L1 5382 6013 -157 2433 128 41 22 chr9 50016376 50016789 -67845838 + MSTA LTR MaLR 1 421 -7 361 222 76 49 chr9 50016790 50016934 -67845693 + L1ME3A LINE L1 6015 6162 -8 284 368 62 0 chr9 50017115 50017259 -67845368 + HERV16-E LTR ERVL 501 653 -4343 252 281 81 49 chr9 50017630 50017815 -67844812 + HERV16-E LTR ERVL 1361 1551 -4103 21 36 0 0 chr9 50017910 50017938 -67844689 + AT_rich Low_complexity Low_complexity 1 28 0 733 361 62 34 chr9 50017991 50018426 -67844201 + HERV16-E LTR ERVL 3366 3828 -1936 2067 165 5 16 chr9 50018426 50018795 -67843832 + MER47A DNA MER2_type 2 366 0 733 361 62 34 chr9 50018795 50019015 -67843612 + HERV16-E LTR ERVL 3828 4040 -1724 880 375 34 13 chr9 50019069 50019541 -67843086 + HERV16-E LTR ERVL 4119 4600 -1054 320 350 55 29 chr9 50019783 50020200 -67842427 + HERV16-E LTR ERVL 4881 5308 -177 284 256 13 13 chr9 50020771 50020849 -67841778 + LTR16C LTR ERVL 414 491 0 1830 272 52 45 chr9 50021738 50022356 -67840271 + MLT2E LTR ERVL 1 622 -6 190 184 13 92 chr9 50022394 50022470 -67840157 - MIR SINE MIR -11 251 182 1601 196 7 0 chr9 50023783 50024093 -67838534 - AluJb SINE Alu 0 312 1 269 143 0 16 chr9 50024625 50024688 -67837939 + (TTA)n Simple_repeat Simple_repeat 1 62 0 379 360 46 20 chr9 50024804 50025001 -67837626 - MIR SINE MIR -52 210 9 236 296 87 0 chr9 50025618 50025733 -67836894 + L1MD3 LINE L1 7862 7986 -9 26 30 0 0 chr9 50026835 50026868 -67835759 + AT_rich Low_complexity Low_complexity 1 33 0 22 56 0 0 chr9 50027002 50027038 -67835589 + AT_rich Low_complexity Low_complexity 1 36 0 286 328 94 8 chr9 50027333 50027461 -67835166 - MIR SINE MIR -100 162 24 187 307 105 9 chr9 50028390 50028433 -67834194 + MER5B DNA MER1_type 7 44 -134 276 77 0 0 chr9 50028433 50028472 -67834155 + (CA)n Simple_repeat Simple_repeat 2 40 0 187 307 105 9 chr9 50028472 50028542 -67834085 + MER5B DNA MER1_type 44 131 -47 2281 60 9 35 chr9 50028686 50029005 -67833622 - AluY SINE Alu 0 311 1 2199 102 0 10 chr9 50029881 50030184 -67832443 - AluSq SINE Alu 0 313 14 198 208 0 0 chr9 50032623 50032671 -67829956 + (CA)n Simple_repeat Simple_repeat 2 49 0 227 157 20 0 chr9 50033258 50033309 -67829318 + (TATATG)n Simple_repeat Simple_repeat 2 53 0 189 0 0 0 chr9 50034705 50034726 -67827901 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1389 170 74 33 chr9 50034728 50034902 -67827725 - AluJo SINE Alu -30 282 92 5052 24 0 3 chr9 50034902 50035491 -67827136 - L1PA3 LINE L1 -3 6152 5566 1389 170 74 33 chr9 50035491 50035587 -67827040 - AluJo SINE Alu -220 92 1 564 129 17 9 chr9 50035858 50035974 -67826653 + CT-rich Low_complexity Low_complexity 1 117 0 23 0 0 0 chr9 50036130 50036153 -67826474 + AT_rich Low_complexity Low_complexity 1 23 0 1115 206 65 7 chr9 50036341 50036624 -67826003 - LTR48B LTR ERV1 -2 642 291 1241 183 0 0 chr9 50036677 50036879 -67825748 + AluJb SINE Alu 111 312 0 198 0 0 0 chr9 50036886 50036908 -67825719 + (TA)n Simple_repeat Simple_repeat 1 22 0 683 293 21 79 chr9 50036941 50037221 -67825406 - LTR48B LTR ERV1 -358 264 1 22 35 0 0 chr9 50037287 50037316 -67825311 + AT_rich Low_complexity Low_complexity 1 29 0 521 248 13 65 chr9 50039342 50039387 -67823240 - MIR SINE MIR -108 154 108 835 250 11 0 chr9 50039387 50039563 -67823064 - MER45A DNA AcHobo 0 178 1 521 248 13 65 chr9 50039563 50039670 -67822957 - MIR SINE MIR -154 108 10 203 316 18 0 chr9 50039821 50039878 -67822749 + MIR SINE MIR 65 122 -140 24 53 0 0 chr9 50039921 50039959 -67822668 + AT_rich Low_complexity Low_complexity 1 38 0 534 263 0 8 chr9 50040093 50040226 -67822401 - MER94 DNA DNA -1 133 2 2209 128 0 0 chr9 50041587 50041891 -67820736 - AluSx SINE Alu -6 306 3 505 89 13 0 chr9 50042213 50042292 -67820335 - L1PA15 LINE L1 -1 6164 6085 192 432 0 11 chr9 50043011 50043106 -67819521 + MIR3 SINE MIR 7 100 -108 509 368 20 12 chr9 50043114 50043367 -67819260 - MIR SINE MIR -6 256 2 263 217 0 0 chr9 50043368 50043414 -67819213 + MIR3 SINE MIR 112 157 -51 6727 52 136 8 chr9 50043574 50044529 -67818098 - L1P LINE L1 -5069 1077 1 549 257 41 53 chr9 50044566 50044737 -67817890 - MIR SINE MIR 0 262 94 197 223 155 58 chr9 50044917 50045020 -67817607 + MIR SINE MIR 29 141 -67 1701 180 47 12 chr9 50046128 50046450 -67816177 - MLT1A1 LTR MaLR 0 365 33 274 231 0 0 chr9 50047478 50047530 -67815097 + L2 LINE L2 3221 3272 0 3036 94 0 0 chr9 50047929 50048331 -67814296 + L1P LINE L1 1 402 -5744 405 254 61 6 chr9 50048462 50048643 -67813984 + L1ME3A LINE L1 5022 5212 -934 343 165 158 101 chr9 50048643 50048801 -67813826 + L1MC5 LINE L1 7742 7908 -53 3632 169 2 32 chr9 50048959 50049587 -67813040 - MER52A LTR ERV1 0 1755 1147 28 48 0 0 chr9 50051823 50051865 -67810762 + AT_rich Low_complexity Low_complexity 1 42 0 1242 176 25 0 chr9 50052553 50052797 -67809830 + L1MB3 LINE L1 5933 6182 -1 418 256 120 21 chr9 50052802 50053036 -67809591 + L1ME4a LINE L1 5617 5873 -248 2388 80 3 0 chr9 50053210 50053510 -67809117 - AluSg SINE Alu -9 301 1 257 298 148 67 chr9 50053618 50053805 -67808822 - MIR3 SINE MIR -21 187 33 2315 75 3 0 chr9 50053805 50054097 -67808530 - AluY SINE Alu -18 293 1 257 298 148 67 chr9 50054097 50054133 -67808494 - MIR3 SINE MIR -175 33 1 368 314 87 37 chr9 50054376 50054752 -67807875 + MLT1I LTR MaLR 1 348 -61 4522 114 3 50 chr9 50054752 50055477 -67807150 - LTR8 LTR ERV1 0 691 1 368 314 87 37 chr9 50055477 50055527 -67807100 + MLT1I LTR MaLR 348 394 -15 286 340 48 68 chr9 50055535 50055741 -67806886 - L2 LINE L2 -182 3090 2889 973 229 31 35 chr9 50055772 50056030 -67806597 + LTR8 LTR ERV1 1 257 -434 773 184 21 0 chr9 50056136 50056277 -67806350 - MER52A LTR ERV1 -1611 144 1 827 276 139 11 chr9 50056285 50056746 -67805881 + L1ME3A LINE L1 5370 5889 -281 315 281 148 7 chr9 50057770 50057905 -67804722 + L2 LINE L2 3160 3313 0 199 267 22 0 chr9 50057934 50057979 -67804648 - MIR3 SINE MIR -46 162 117 1107 218 59 35 chr9 50058028 50058251 -67804376 - MLT2B1 LTR ERVL 0 520 304 180 0 0 0 chr9 50058251 50058271 -67804356 + (AGATG)n Simple_repeat Simple_repeat 1 20 0 1107 218 59 35 chr9 50058271 50058508 -67804119 - MLT2B1 LTR ERVL -216 304 1 1237 146 28 31 chr9 50059996 50060283 -67802344 - L1M1 LINE L1 -3921 2927 2647 2300 102 23 41 chr9 50060288 50060681 -67801946 + L1MA4 LINE L1 5910 6295 -5 2270 82 9 0 chr9 50060930 50061247 -67801380 + L1PB2 LINE L1 5828 6147 -4 22 56 0 0 chr9 50062595 50062631 -67799996 + AT_rich Low_complexity Low_complexity 1 36 0 2594 179 4 40 chr9 50063125 50063668 -67798959 + L1 LINE L1 3811 4333 -1813 6285 104 30 0 chr9 50063668 50064781 -67797846 - L1PA7 LINE L1 -1 6153 5027 286 130 19 0 chr9 50064881 50064935 -67797692 + CT-rich Low_complexity Low_complexity 1 55 0 309 288 101 14 chr9 50066732 50066871 -67795756 - MIR SINE MIR 0 262 112 192 221 13 117 chr9 50068067 50068144 -67794483 + L3 LINE CR1 960 1028 -549 210 219 0 0 chr9 50069358 50069399 -67793228 - L2 LINE L2 -1 3312 3272 376 294 105 0 chr9 50069622 50069765 -67792862 - MIR SINE MIR -34 228 71 25 51 0 0 chr9 50069950 50069989 -67792638 + AT_rich Low_complexity Low_complexity 1 39 0 712 387 67 22 chr9 50070598 50070916 -67791711 + L2 LINE L2 2302 2604 -668 2031 215 78 72 chr9 50070916 50071566 -67791061 - MLT1E1 LTR MaLR 0 654 1 712 387 67 22 chr9 50071566 50072171 -67790456 + L2 LINE L2 2604 3271 -1 226 273 0 23 chr9 50072551 50072639 -67789988 + (CATAA)n Simple_repeat Simple_repeat 5 90 0 2137 135 3 0 chr9 50073057 50073369 -67789258 - AluSq SINE Alu 0 313 1 1254 275 58 18 chr9 50073553 50074101 -67788526 - L1MEc LINE L1 -3667 2548 2024 9885 113 16 1 chr9 50074101 50076334 -67786293 + L1PA8A LINE L1 3874 6125 -6 1254 275 58 18 chr9 50076334 50076440 -67786187 - L1MEc LINE L1 -4191 2024 1924 225 0 0 0 chr9 50076440 50076465 -67786162 + (TA)n Simple_repeat Simple_repeat 1 25 0 1254 275 58 18 chr9 50076465 50076721 -67785906 - L1MEc LINE L1 -4291 1924 1628 398 329 71 6 chr9 50076725 50076895 -67785732 - MLT1L LTR MaLR -82 533 353 230 332 201 9 chr9 50076941 50077155 -67785472 - MLT1L LTR MaLR -346 269 15 239 332 122 76 chr9 50077662 50077715 -67784912 - L3 LINE CR1 -199 1378 1329 765 264 93 5 chr9 50077715 50077908 -67784719 - MER63A DNA MER1_type 0 210 1 239 332 122 76 chr9 50077908 50078288 -67784339 - L3 LINE CR1 -248 1329 925 906 247 23 5 chr9 50078343 50078562 -67784065 - MER58A DNA MER1_type 0 224 2 1885 181 3 0 chr9 50079041 50079351 -67783276 - AluSx SINE Alu -1 311 1 491 204 0 0 chr9 50079579 50079667 -67782960 + MER97b DNA MER1_type? 108 195 -858 33 0 0 0 chr9 50080007 50080040 -67782587 + AT_rich Low_complexity Low_complexity 1 33 0 30 0 0 0 chr9 50081566 50081596 -67781031 + AT_rich Low_complexity Low_complexity 1 30 0 495 73 0 0 chr9 50082209 50082277 -67780350 + (TG)n Simple_repeat Simple_repeat 2 69 0 28 0 0 0 chr9 50082897 50082925 -67779702 + AT_rich Low_complexity Low_complexity 1 28 0 234 0 0 0 chr9 50084625 50084651 -67777976 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 21 36 0 0 chr9 50086312 50086340 -67776287 + AT_rich Low_complexity Low_complexity 1 28 0 204 40 0 0 chr9 50087298 50087323 -67775304 + (T)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr9 50090188 50090209 -67772418 + AT_rich Low_complexity Low_complexity 1 21 0 437 290 8 23 chr9 50090829 50090960 -67771667 - MIR SINE MIR -61 147 19 908 217 12 0 chr9 50092102 50092268 -67770359 - FAM SINE Alu -7 168 1 238 182 23 0 chr9 50093195 50093239 -67769388 + CT-rich Low_complexity Low_complexity 3 47 0 2365 65 0 0 chr9 50093274 50093566 -67769061 + AluY SINE Alu 2 293 -18 21 0 0 0 chr9 50093566 50093587 -67769040 + AT_rich Low_complexity Low_complexity 1 21 0 346 235 0 0 chr9 50093790 50093858 -67768769 - MER58B DNA MER1_type -34 307 240 612 185 33 60 chr9 50093859 50094043 -67768584 + MER96B DNA MER1_type? 238 416 -1 726 219 51 6 chr9 50094044 50094222 -67768405 - MER58B DNA MER1_type -97 244 59 2396 232 122 14 chr9 50095936 50097266 -67765361 - L1ME1 LINE L1 -5 6161 4681 21 82 0 0 chr9 50097628 50097677 -67764950 + AT_rich Low_complexity Low_complexity 1 49 0 23 33 0 0 chr9 50098414 50098444 -67764183 + AT_rich Low_complexity Low_complexity 1 30 0 510 248 93 77 chr9 50098555 50098878 -67763749 + L1ME3A LINE L1 5348 5675 -446 * 6328 84 9 4 chr9 50098870 50099954 -67762673 + L1PA8A LINE L1 5011 6104 -27 204 67 0 0 chr9 50099954 50099984 -67762643 + (T)n Simple_repeat Simple_repeat 1 30 0 24 53 0 0 chr9 50100958 50100996 -67761631 + AT_rich Low_complexity Low_complexity 1 38 0 1382 275 90 42 chr9 50101135 50101713 -67760914 - MER90 LTR ERV1 -8 606 1 327 297 180 0 chr9 50101713 50101841 -67760786 - MIR SINE MIR -104 158 8 1603 178 90 80 chr9 50102640 50103001 -67759626 + MLT2D LTR ERVL 1 368 -46 802 10 29 0 chr9 50103001 50103103 -67759524 + (TCTA)n Simple_repeat Simple_repeat 4 108 0 1603 178 90 80 chr9 50103103 50103141 -67759486 + MLT2D LTR ERVL 368 404 -10 266 303 46 0 chr9 50103295 50103404 -67759223 + L2 LINE L2 2566 2679 -635 1576 198 7 7 chr9 50103580 50103888 -67758739 - AluJb SINE Alu -2 310 3 1116 37 0 15 chr9 50104594 50104728 -67757899 - AluY SINE Alu -179 132 1 887 228 16 0 chr9 50104732 50104916 -67757711 - MER5A DNA MER1_type -2 187 1 190 211 0 0 chr9 50105070 50105108 -67757519 + MIR SINE MIR 215 252 -10 237 260 14 0 chr9 50105600 50105673 -67756954 + (TA)n Simple_repeat Simple_repeat 2 75 0 252 258 0 34 chr9 50105673 50105762 -67756865 + L1MC4 LINE L1 6614 6699 -1343 682 212 169 21 chr9 50110287 50110476 -67752151 + MER20 DNA MER1_type 1 217 -2 2389 88 0 7 chr9 50110925 50111231 -67751396 - AluSg SINE Alu -6 304 1 2436 58 0 10 chr9 50111582 50111895 -67750732 + AluY SINE Alu 1 310 -1 628 268 27 27 chr9 50112052 50112276 -67750351 + L1ME3A LINE L1 5777 6000 -170 2118 205 71 108 chr9 50112356 50113004 -67749623 - MLT1E2 LTR MaLR 0 626 1 192 158 0 0 chr9 50113096 50113134 -67749493 - L2 LINE L2 -1 3312 3275 1133 208 96 10 chr9 50113134 50113447 -67749180 + LTR48B LTR ERV1 1 340 -304 450 0 0 0 chr9 50113447 50113497 -67749130 + (TA)n Simple_repeat Simple_repeat 2 51 0 1184 190 0 0 chr9 50113497 50113692 -67748935 - AluJb SINE Alu -7 305 111 1229 210 32 7 chr9 50113745 50114037 -67748590 + LTR48B LTR ERV1 291 642 -2 32 26 0 0 chr9 50114225 50114264 -67748363 + AT_rich Low_complexity Low_complexity 1 39 0 448 259 9 36 chr9 50114566 50114678 -67747949 + L2 LINE L2 3204 3312 -1 442 266 133 59 chr9 50114835 50115158 -67747469 + MLT1J2 LTR MaLR 37 383 -67 285 109 0 0 chr9 50115334 50115380 -67747247 + (TG)n Simple_repeat Simple_repeat 1 46 0 483 231 38 19 chr9 50115407 50115567 -67747060 + MER103 DNA DNA 4 166 0 1346 181 43 56 chr9 50116430 50116733 -67745894 + AluJo SINE Alu 5 303 -9 229 352 46 0 chr9 50116784 50116892 -67745735 + MIR SINE MIR 30 142 -66 30 59 0 0 chr9 50117609 50117660 -67744967 + AT_rich Low_complexity Low_complexity 1 51 0 324 0 0 0 chr9 50117767 50117803 -67744824 + (TG)n Simple_repeat Simple_repeat 1 36 0 384 59 0 0 chr9 50117803 50117854 -67744773 + (GA)n Simple_repeat Simple_repeat 2 52 0 345 167 0 206 chr9 50119352 50119478 -67743149 + LTR40a LTR ERVL 54 153 -366 213 306 12 47 chr9 50119887 50119972 -67742655 - MIR3 SINE MIR -6 202 121 319 341 72 24 chr9 50120280 50120488 -67742139 + MIR SINE MIR 41 258 -4 183 333 111 0 chr9 50120885 50120948 -67741679 - L2 LINE L2 -13 3300 3231 778 294 36 16 chr9 50121006 50121254 -67741373 - MIR SINE MIR 0 262 10 2310 174 66 0 chr9 50122675 50123099 -67739528 - LTR47A LTR ERVL 0 452 1 469 367 36 60 chr9 50123189 50123347 -67739280 - L2 LINE L2 -190 3123 2963 1896 168 0 0 chr9 50123347 50123656 -67738971 + AluSx SINE Alu 3 311 -1 469 367 36 60 chr9 50123656 50123954 -67738673 - L2 LINE L2 -350 2963 2680 1166 312 58 30 chr9 50123991 50124311 -67738316 - L2 LINE L2 -508 2806 2462 2177 114 0 0 chr9 50124311 50124610 -67738017 + AluSx SINE Alu 1 299 -13 1166 312 58 30 chr9 50124610 50124856 -67737771 - L2 LINE L2 -852 2462 2224 740 307 82 39 chr9 50124883 50125238 -67737389 + MLT1I LTR MaLR 32 401 -8 418 279 14 43 chr9 50125255 50125395 -67737232 - L2 LINE L2 -1106 2208 2073 279 0 0 0 chr9 50125971 50126002 -67736625 + (CA)n Simple_repeat Simple_repeat 1 31 0 373 306 67 89 chr9 50126062 50126558 -67736069 - HsTC2 DNA Tc2 -1378 520 36 607 289 72 14 chr9 50127005 50127213 -67735414 - L2 LINE L2 0 3313 3094 423 296 90 14 chr9 50127220 50127443 -67735184 - L2 LINE L2 -342 2972 2733 197 336 168 0 chr9 50128674 50128781 -67733846 + MIR SINE MIR 49 173 -89 282 208 22 7 chr9 50129214 50129361 -67733266 + CT-rich Low_complexity Low_complexity 1 149 0 21 57 0 0 chr9 50130611 50130646 -67731981 + AT_rich Low_complexity Low_complexity 1 35 0 180 359 43 0 chr9 50130940 50131032 -67731595 - MIR SINE MIR -36 226 131 1341 198 7 31 chr9 50131254 50131547 -67731080 - AluJo SINE Alu -16 296 11 1531 183 2 6 chr9 50131709 50132148 -67730479 - MER54A LTR ERVL 0 901 421 228 290 161 49 chr9 50132161 50132323 -67730304 - MER117 DNA MER1_type -1 196 17 1978 159 0 0 chr9 50132915 50133224 -67729403 + AluSx SINE Alu 1 309 -3 368 257 63 89 chr9 50133478 50134082 -67728545 + L1ME4a LINE L1 3589 4176 -1970 2925 119 55 2 chr9 50134142 50134597 -67728030 + HSMAR1 DNA Mariner 1 479 -808 5501 115 21 2 chr9 50134762 50135556 -67727071 + HSMAR1 DNA Mariner 479 1287 0 289 298 0 58 chr9 50135593 50135784 -67726843 + (TA)n Simple_repeat Simple_repeat 1 180 0 536 286 63 68 chr9 50135811 50136238 -67726389 + L1ME4a LINE L1 4364 4788 -1358 21 0 0 0 chr9 50136319 50136340 -67726287 + AT_rich Low_complexity Low_complexity 1 21 0 875 125 73 0 chr9 50136405 50136541 -67726086 + AluJb SINE Alu 1 146 -166 561 130 0 0 chr9 50136541 50136618 -67726009 + LTR9 LTR ERV1 536 612 0 345 245 20 29 chr9 50136643 50136745 -67725882 - MER5A DNA MER1_type -80 109 9 1646 205 53 134 chr9 50136875 50137539 -67725088 - LTR9 LTR ERV1 0 612 3 1252 182 43 6 chr9 50137545 50137818 -67724809 - HUERS-P3 LTR ERV1 -1 8918 7158 2211 87 6 13 chr9 50137961 50138273 -67724354 - AluY SINE Alu -1 310 1 2349 168 10 8 chr9 50138431 50138824 -67723803 - HUERS-P3 LTR ERV1 -2007 6912 6519 545 313 77 30 chr9 50139134 50139694 -67722933 + L1ME4a LINE L1 5330 5915 -206 26 64 0 0 chr9 50139785 50139832 -67722795 + AT_rich Low_complexity Low_complexity 1 47 0 244 209 0 105 chr9 50139845 50139894 -67722733 + A-rich Low_complexity Low_complexity 1 35 -59 1826 165 20 0 chr9 50139894 50140197 -67722430 + AluSx SINE Alu 1 309 -3 244 209 0 105 chr9 50140197 50140252 -67722375 + A-rich Low_complexity Low_complexity 35 94 0 23 0 0 0 chr9 50140290 50140313 -67722314 + AT_rich Low_complexity Low_complexity 1 23 0 2358 55 3 6 chr9 50140384 50140696 -67721931 - AluY SINE Alu 0 311 1 23 0 0 0 chr9 50141250 50141273 -67721354 + AT_rich Low_complexity Low_complexity 1 23 0 216 0 0 0 chr9 50141712 50141736 -67720891 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 623 175 9 0 chr9 50141736 50141850 -67720777 - L1PA16 LINE L1 -20 6146 6032 237 65 0 0 chr9 50142882 50142913 -67719714 + (T)n Simple_repeat Simple_repeat 1 31 0 758 222 40 0 chr9 50142913 50143089 -67719538 + MER58A DNA MER1_type 42 224 0 424 0 36 0 chr9 50143148 50143204 -67719423 + (TTTTA)n Simple_repeat Simple_repeat 2 59 0 335 245 138 61 chr9 50143795 50143991 -67718636 + MIR SINE MIR 52 262 0 23 54 0 0 chr9 50145286 50145323 -67717304 + AT_rich Low_complexity Low_complexity 1 37 0 304 289 0 0 chr9 50145370 50145446 -67717181 + (TATATG)n Simple_repeat Simple_repeat 3 78 0 610 387 84 23 chr9 50145512 50146207 -67716420 - L2 LINE L2 -44 3269 2521 227 307 71 14 chr9 50146692 50146832 -67715795 - HAL1b LINE L1 -6 1342 1195 286 385 0 34 chr9 50146858 50147006 -67715621 + MIR3 SINE MIR 4 146 -62 961 222 56 57 chr9 50147006 50147383 -67715244 + L1ME1 LINE L1 5796 6164 -2 3448 261 82 10 chr9 50147395 50149081 -67713546 + L1ME LINE L1 3951 5751 -413 1627 148 0 0 chr9 50149084 50149328 -67713299 + AluSg1 SINE Alu 48 291 -18 921 272 28 8 chr9 50151156 50151410 -67711217 - L1ME1 LINE L1 -6 6160 5902 296 136 0 0 chr9 50151410 50151454 -67711173 - Tigger4(Zombi) DNA MER2_type 0 2731 2688 825 194 157 64 chr9 50151456 50151736 -67710891 - L1M1 LINE L1 -387 5779 5480 315 273 129 8 chr9 50152080 50152212 -67710415 + MIR SINE MIR 65 212 -50 601 330 115 37 chr9 50152390 50152933 -67709694 - L2 LINE L2 -1 3312 2721 2344 192 61 2 chr9 50152951 50153426 -67709201 - MLT1D LTR MaLR -2 503 1 285 290 99 0 chr9 50154072 50154203 -67708424 - MIR SINE MIR 0 262 119 25 0 0 0 chr9 50154352 50154377 -67708250 + AT_rich Low_complexity Low_complexity 1 25 0 306 301 171 19 chr9 50156318 50156534 -67706093 + MIR SINE MIR 4 252 -10 3303 168 18 7 chr9 50157254 50157826 -67704801 - MER50 LTR ERV1 -23 711 134 4440 137 52 8 chr9 50157826 50158578 -67704049 - LTR1 LTR ERV1 0 785 1 679 164 86 7 chr9 50158610 50158750 -67703877 - MER50 LTR ERV1 -583 151 1 474 170 50 0 chr9 50159191 50159291 -67703336 + L1MA8 LINE L1 4693 4797 -1349 1613 160 0 0 chr9 50159291 50159559 -67703068 - AluSx SINE Alu -44 268 1 1118 129 40 45 chr9 50159559 50159783 -67702844 + THE1C LTR MaLR 153 375 0 425 268 184 6 chr9 50159813 50159981 -67702646 + MIR SINE MIR 35 232 -30 681 166 55 48 chr9 50161498 50161643 -67700984 + LTR47A LTR ERVL 221 366 -86 2566 156 41 11 chr9 50161645 50163016 -67699611 + L1MA8 LINE L1 4783 6290 -1 186 382 91 0 chr9 50163281 50163391 -67699236 + L2 LINE L2 3189 3308 -5 4905 216 23 14 chr9 50164510 50165720 -67696907 + L1MC1 LINE L1 5110 6333 0 395 202 35 18 chr9 50165704 50165818 -67696809 + L1M4 LINE L1 1776 1891 -4493 * 357 24 0 0 chr9 50165820 50165862 -67696765 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 1448 206 120 10 chr9 50165866 50166333 -67696294 + L1M4 LINE L1 2033 2542 -3840 444 274 24 6 chr9 50166313 50166477 -67696150 + L1M4 LINE L1 5252 5418 -964 * 2431 77 0 0 chr9 50166486 50166797 -67695830 + AluY SINE Alu 1 311 0 22 56 0 0 chr9 50168451 50168487 -67694140 + AT_rich Low_complexity Low_complexity 1 36 0 607 298 74 33 chr9 50169912 50170666 -67691961 + L1MEc LINE L1 1030 1814 -4582 273 269 0 0 chr9 50171063 50171130 -67691497 + MLT1E LTR MaLR 40 106 -487 640 303 57 29 chr9 50171133 50171756 -67690871 + L1MEc LINE L1 2145 2761 -3454 288 0 0 0 chr9 50171756 50171788 -67690839 + (TG)n Simple_repeat Simple_repeat 2 33 0 640 303 57 29 chr9 50171788 50171886 -67690741 + L1MEc LINE L1 2761 2855 -3360 330 259 83 67 chr9 50172112 50172305 -67690322 + MLT1H LTR MaLR 107 302 -247 230 209 43 50 chr9 50172546 50172685 -67689942 + L1MEc LINE L1 3211 3348 -2867 1797 133 0 40 chr9 50173328 50173493 -67689134 - AluY SINE Alu -23 288 139 252 0 0 0 chr9 50173493 50173521 -67689106 + (TA)n Simple_repeat Simple_repeat 2 29 0 1797 133 0 40 chr9 50173521 50173655 -67688972 - AluY SINE Alu -172 139 1 195 204 0 0 chr9 50174327 50174376 -67688251 + (TA)n Simple_repeat Simple_repeat 2 50 0 303 28 0 0 chr9 50174466 50174502 -67688125 + (CA)n Simple_repeat Simple_repeat 2 37 0 2259 117 3 0 chr9 50174859 50175168 -67687459 + AluSx SINE Alu 3 312 0 7520 27 11 2 chr9 50175168 50176351 -67686276 + L1PA4 LINE L1 4953 6147 -8 443 322 13 20 chr9 50176426 50176575 -67686052 - MIR SINE MIR -86 176 29 274 316 59 40 chr9 50177209 50177361 -67685266 + L2 LINE L2 3159 3313 0 243 300 0 0 chr9 50177409 50177469 -67685158 + MIR SINE MIR 82 141 -121 1999 110 3 13 chr9 50178516 50178816 -67683811 + AluSx SINE Alu 1 297 -15 302 320 58 32 chr9 50179412 50179568 -67683059 - L1M4 LINE L1 -5667 1188 1029 378 239 84 36 chr9 50179899 50180066 -67682561 - L1M4 LINE L1 -6575 284 110 852 317 85 13 chr9 50180145 50180988 -67681639 + L1ME3A LINE L1 4263 5166 -980 258 286 82 14 chr9 50181064 50181284 -67681343 + L1ME3A LINE L1 5263 5497 -667 275 206 19 28 chr9 50181284 50181391 -67681236 + GA-rich Low_complexity Low_complexity 2 107 0 1008 285 52 28 chr9 50181462 50181928 -67680699 + L1ME3A LINE L1 5512 5988 -182 469 81 0 0 chr9 50181995 50182057 -67680570 + Alu SINE Alu 232 293 -17 1214 198 28 32 chr9 50182059 50182342 -67680285 - AluJo SINE Alu -30 282 1 314 266 18 18 chr9 50182342 50182455 -67680172 + L1ME3A LINE L1 6049 6161 -9 461 17 17 0 chr9 50183038 50183096 -67679531 + (TCTA)n Simple_repeat Simple_repeat 2 60 0 249 247 34 0 chr9 50183426 50183515 -67679112 + T-rich Low_complexity Low_complexity 2 93 0 1173 199 28 0 chr9 50183527 50183738 -67678889 + L1PA16 LINE L1 7 223 -6626 * 5385 191 27 56 chr9 50183737 50186180 -67676447 + L1PA16 LINE L1 4508 6869 0 276 184 58 12 chr9 50186211 50186643 -67675984 + (TA)n Simple_repeat Simple_repeat 1 451 0 192 172 0 0 chr9 50186657 50186715 -67675912 + (TATAA)n Simple_repeat Simple_repeat 2 59 0 33 43 0 0 chr9 50186715 50186762 -67675865 + AT_rich Low_complexity Low_complexity 1 47 0 182 152 73 13 chr9 50186765 50186916 -67675711 + (TA)n Simple_repeat Simple_repeat 1 160 0 369 284 63 111 chr9 50186916 50187359 -67675268 - L1MC4 LINE L1 -165 7877 7456 2232 109 0 6 chr9 50187679 50187991 -67674636 + AluSg SINE Alu 1 310 0 22 35 0 0 chr9 50188546 50188575 -67674052 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr9 50188653 50188681 -67673946 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr9 50188769 50188800 -67673827 + AT_rich Low_complexity Low_complexity 1 31 0 265 329 24 39 chr9 50189070 50189277 -67673350 + HAL1b LINE L1 397 600 -748 369 301 56 31 chr9 50189512 50189708 -67672919 + L1M4 LINE L1 2176 2376 -3770 1552 186 21 10 chr9 50189726 50190016 -67672611 + AluJo SINE Alu 1 293 -19 23 0 0 0 chr9 50190064 50190087 -67672540 + AT_rich Low_complexity Low_complexity 1 23 0 1195 187 59 4 chr9 50190607 50190880 -67671747 + L1MA4 LINE L1 5993 6280 -20 647 170 44 30 chr9 50190979 50191114 -67671513 + L1MA9 LINE L1 5866 6002 -310 773 299 56 29 chr9 50191722 50192243 -67670384 + L1M4c LINE L1 1028 1562 -4822 1253 249 80 13 chr9 50192421 50192798 -67669829 - MLT1F LTR MaLR 0 542 141 4661 237 33 40 chr9 50192811 50195764 -67666863 - L1 LINE L1 -2793 3535 595 2036 162 50 19 chr9 50195776 50196152 -67666475 - MER61D LTR ERV1 0 501 114 3319 162 18 5 chr9 50196188 50196755 -67665872 - L1 LINE L1 -4742 586 13 246 229 57 0 chr9 50196797 50196867 -67665760 + L1ME3 LINE L1 5363 5436 -748 2241 92 34 0 chr9 50196872 50197166 -67665461 + AluSg SINE Alu 1 304 -6 562 314 54 54 chr9 50197276 50197530 -67665097 + L1ME3 LINE L1 5513 5769 -393 1223 229 23 33 chr9 50197530 50197832 -67664795 + AluJo SINE Alu 2 300 -12 562 314 54 54 chr9 50197832 50197963 -67664664 + L1ME3 LINE L1 5768 5898 -264 1369 203 133 3 chr9 50197971 50198272 -67664355 + MER2 DNA MER2_type 1 340 -5 312 272 41 67 chr9 50198298 50198493 -67664134 + L1ME3 LINE L1 5931 6120 -42 24 32 0 0 chr9 50198958 50198989 -67663638 + AT_rich Low_complexity Low_complexity 1 31 0 194 366 30 38 chr9 50199178 50199309 -67663318 - L2 LINE L2 -2 3270 3141 21 71 0 0 chr9 50199564 50199606 -67663021 + AT_rich Low_complexity Low_complexity 1 42 0 380 141 24 0 chr9 50199608 50199693 -67662934 + L1MA7 LINE L1 6204 6290 -1 22 0 0 0 chr9 50199861 50199883 -67662744 + AT_rich Low_complexity Low_complexity 1 22 0 687 268 81 79 chr9 50201668 50202213 -67660414 - MLT1H1 LTR MaLR -9 546 1 26 30 0 0 chr9 50203310 50203343 -67659284 + AT_rich Low_complexity Low_complexity 1 33 0 445 288 0 9 chr9 50203709 50203820 -67658807 + MER117 DNA MER1_type 2 111 -86 33 0 0 0 chr9 50204690 50204723 -67657904 + AT_rich Low_complexity Low_complexity 1 33 0 326 303 92 9 chr9 50204729 50204838 -67657789 + MIR SINE MIR 3 120 -142 227 91 0 0 chr9 50204840 50204873 -67657754 - MLT2B1 LTR ERVL -9 405 373 254 161 51 8 chr9 50204885 50205003 -67657624 + (TA)n Simple_repeat Simple_repeat 1 123 0 1410 235 56 63 chr9 50205052 50205448 -67657179 - MLT2B1 LTR ERVL -125 395 3 1918 159 0 28 chr9 50205610 50205930 -67656697 - AluSx SINE Alu -1 311 1 252 427 24 0 chr9 50206604 50206728 -67655899 + L2 LINE L2 2619 2745 -569 377 343 41 7 chr9 50206812 50206958 -67655669 + MIR SINE MIR 2 152 -110 2378 131 41 7 chr9 50207288 50207701 -67654926 + MSTA LTR MaLR 1 427 -1 406 315 55 20 chr9 50207720 50207866 -67654761 - MIR SINE MIR -110 152 2 45 45 0 0 chr9 50208377 50208443 -67654184 + AT_rich Low_complexity Low_complexity 1 66 0 227 103 26 0 chr9 50208594 50208633 -67653994 + GA-rich Low_complexity Low_complexity 1 40 0 212 115 19 58 chr9 50209817 50209869 -67652758 + (TTATA)n Simple_repeat Simple_repeat 5 54 0 801 102 78 8 chr9 50210370 50210498 -67652129 - MER85 DNA T2_type -2 137 1 379 347 52 55 chr9 50210883 50211266 -67651361 + MLT1I LTR MaLR 25 406 -3 28 0 0 0 chr9 50211667 50211695 -67650932 + AT_rich Low_complexity Low_complexity 1 28 0 1332 288 77 86 chr9 50212812 50213953 -67648674 + L1MB8 LINE L1 13 1143 -5399 3343 246 98 35 chr9 50213994 50215732 -67646895 + L1MB8 LINE L1 2358 4206 -2438 * 3566 231 45 21 chr9 50215728 50217598 -67645029 + L1MB8 LINE L1 4770 6675 -1 192 292 125 58 chr9 50219135 50219255 -67643372 - MIR SINE MIR -116 146 19 1680 317 101 44 chr9 50219333 50219947 -67642680 + L2 LINE L2 1986 2564 -749 651 316 81 34 chr9 50219947 50220441 -67642186 + LTR33 LTR ERVL 5 521 0 1680 317 101 44 chr9 50220441 50221035 -67641592 + L2 LINE L2 2564 3286 -27 225 0 0 0 chr9 50221068 50221093 -67641534 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 222 152 22 22 chr9 50221100 50221146 -67641481 - MIR SINE MIR -98 164 119 213 347 31 10 chr9 50221188 50221286 -67641341 + L2 LINE L2 3171 3270 -2 2219 105 3 3 chr9 50222683 50222989 -67639638 + AluSc SINE Alu 3 308 -1 5744 183 38 18 chr9 50223194 50224278 -67638349 + Ricksha DNA DNA 123 1233 -2013 1700 163 0 4 chr9 50224278 50224555 -67638072 + AluSx SINE Alu 35 310 -2 5744 183 38 18 chr9 50224555 50224607 -67638020 + Ricksha DNA DNA 1233 1282 -1964 5105 201 30 9 chr9 50224607 50225792 -67636835 + L1 LINE L1 3096 4305 -1841 232 280 32 21 chr9 50225798 50225891 -67636736 - MLT1F1 LTR MaLR -450 117 24 1120 265 25 9 chr9 50225892 50226213 -67636414 - L1MC3 LINE L1 -701 7084 6759 * 4486 242 71 54 chr9 50226201 50228217 -67634410 - L1M4 LINE L1 -1049 5097 3042 840 341 57 39 chr9 50228466 50229011 -67633616 - L1MCb LINE L1 -5473 572 18 36 40 0 0 chr9 50229431 50229481 -67633146 + AT_rich Low_complexity Low_complexity 1 50 0 2139 113 0 10 chr9 50230444 50230755 -67631872 + AluSc SINE Alu 1 308 -1 769 306 87 6 chr9 50231547 50231880 -67630747 + L1MB3 LINE L1 5381 5740 -2068 206 62 31 0 chr9 50231994 50232026 -67630601 + (GAAA)n Simple_repeat Simple_repeat 2 34 0 1163 299 102 69 chr9 50232153 50233244 -67629383 + L1MC4 LINE L1 6413 7481 -327 1867 180 67 30 chr9 50233245 50233779 -67628848 + MLT2A2 LTR ERVL 1 554 0 6342 131 12 4 chr9 50233779 50234753 -67627874 + HERVL-A2 LTR ERVL 1 982 -4672 6037 115 20 5 chr9 50234749 50235625 -67627002 + HERVL LTR ERVL 4692 5581 -73 * 240 86 0 0 chr9 50235682 50235717 -67626910 + (TG)n Simple_repeat Simple_repeat 2 36 0 2416 157 10 128 chr9 50235832 50236324 -67626303 + Tigger2 DNA MER2_type 1 2718 0 231 174 0 22 chr9 50236782 50236828 -67625799 - L2 LINE L2 -4 3309 3265 408 349 40 0 chr9 50237150 50237302 -67625325 + MIR SINE MIR 3 160 -102 21 0 0 0 chr9 50237536 50237557 -67625070 + AT_rich Low_complexity Low_complexity 1 21 0 1807 248 56 2 chr9 50241532 50241975 -67620652 - L1ME1 LINE L1 -55 6111 5645 1409 287 148 50 chr9 50243435 50244571 -67618056 - L2 LINE L2 0 3313 2067 852 203 28 74 chr9 50244942 50245159 -67617468 + MER20 DNA MER1_type 13 219 0 498 111 25 0 chr9 50245290 50245371 -67617256 - L1MB4 LINE L1 -4 6176 6094 303 160 0 0 chr9 50245385 50245435 -67617192 + L1MB3 LINE L1 5905 5954 -229 468 285 87 34 chr9 50245524 50245731 -67616896 - LTR50 LTR ERVL -113 682 465 1449 195 122 9 chr9 50245938 50246266 -67616361 - MLT1A1 LTR MaLR 0 365 1 625 322 101 10 chr9 50246770 50247068 -67615559 + L2 LINE L2 922 1246 -2068 261 262 197 27 chr9 50247074 50247257 -67615370 + L1ME LINE L1 5326 5539 -582 610 339 127 26 chr9 50247257 50247714 -67614913 - L2 LINE L2 -2 3311 2809 262 292 69 50 chr9 50247804 50248006 -67614621 + L1ME LINE L1 5541 5746 -375 351 260 142 16 chr9 50248061 50248188 -67614439 - L2 LINE L2 0 3313 3171 377 335 108 68 chr9 50248810 50249687 -67612940 - L2 LINE L2 0 3313 2395 5989 153 22 30 chr9 50249750 50250908 -67611719 - L1MC1 LINE L1 0 6333 5185 2167 109 0 44 chr9 50251509 50251829 -67610798 + AluSx SINE Alu 1 306 -6 759 259 62 25 chr9 50252063 50252306 -67610321 - MIR SINE MIR 0 262 11 387 323 77 46 chr9 50252862 50253057 -67609570 + MIR SINE MIR 62 262 0 24 53 0 0 chr9 50253215 50253253 -67609374 + AT_rich Low_complexity Low_complexity 1 38 0 247 233 0 33 chr9 50253675 50253735 -67608892 + (TATG)n Simple_repeat Simple_repeat 2 59 0 1779 182 31 0 chr9 50253980 50254271 -67608356 - AluJb SINE Alu -12 300 1 718 268 48 55 chr9 50254938 50255210 -67607417 - Charlie8 DNA MER1_type -2136 281 12 230 255 10 0 chr9 50255246 50255317 -67607310 - MIR SINE MIR -75 133 61 2508 155 24 5 chr9 50256009 50256429 -67606198 - MSTA LTR MaLR 0 428 1 13113 220 31 33 chr9 50257163 50258164 -67604463 - L1PA16 LINE L1 0 7604 6603 749 168 0 0 chr9 50258164 50258289 -67604338 - AluSg/x SINE Alu -20 292 168 13113 220 31 33 chr9 50258289 50262519 -67600108 - L1PA16 LINE L1 -1001 6603 2258 269 125 0 0 chr9 50262532 50262572 -67600055 - 5S rRNA rRNA -81 40 1 634 114 0 0 chr9 50262572 50262660 -67599967 - 5S rRNA rRNA -1 120 33 243 300 0 0 chr9 50262676 50262736 -67599891 - L1PA16 LINE L1 -5340 2241 2182 370 333 0 0 chr9 50262952 50263051 -67599576 - L1PA16 LINE L1 -5400 2181 2083 1124 325 21 52 chr9 50263172 50263802 -67598825 - L1PA16 LINE L1 -6177 1397 788 227 54 27 0 chr9 50263916 50263953 -67598674 + (TCTA)n Simple_repeat Simple_repeat 4 41 0 214 295 57 38 chr9 50264552 50264657 -67597970 - MIR SINE MIR -31 231 125 3531 150 55 26 chr9 50264700 50265395 -67597232 + L1MA5 LINE L1 5578 6292 -8 1110 319 58 30 chr9 50265650 50265896 -67596731 + L2 LINE L2 2224 2462 -852 1906 144 0 0 chr9 50265896 50266195 -67596432 - AluSx SINE Alu -13 299 1 1110 319 58 30 chr9 50266195 50266515 -67596112 + L2 LINE L2 2462 2806 -508 464 378 31 7 chr9 50266552 50266838 -67595789 + L2 LINE L2 2680 2972 -342 23 0 0 0 chr9 50266838 50266861 -67595766 + AT_rich Low_complexity Low_complexity 1 23 0 399 238 0 0 chr9 50266874 50266954 -67595673 - AluSg/x SINE Alu -15 287 208 35 41 0 0 chr9 50273567 50273616 -67589011 + AT_rich Low_complexity Low_complexity 1 49 0 23 92 0 0 chr9 50274704 50274769 -67587858 + AT_rich Low_complexity Low_complexity 1 65 0 31 44 0 0 chr9 50275356 50275401 -67587226 + AT_rich Low_complexity Low_complexity 1 45 0 31 0 0 0 chr9 50275932 50275963 -67586664 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr9 50278629 50278650 -67583977 + AT_rich Low_complexity Low_complexity 1 21 0 25 75 0 0 chr9 50278990 50279043 -67583584 + AT_rich Low_complexity Low_complexity 1 53 0 22 0 0 0 chr9 50292088 50292110 -67570517 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr9 50292132 50292163 -67570464 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr9 50293801 50293824 -67568803 + AT_rich Low_complexity Low_complexity 1 23 0 2018 116 23 0 chr9 50344893 50345203 -67517424 - L1P LINE L1 -1092 5054 4738 1199 95 3 4 chr9 50345208 50345384 -67517243 + L1M4c LINE L1 1475 2114 -4268 23 0 0 0 chr9 50345673 50345696 -67516931 + AT_rich Low_complexity Low_complexity 1 23 0 4773 103 21 22 chr9 50345987 50346747 -67515880 - L1PA13 LINE L1 -10 6153 5395 5546 141 27 1 chr9 50346748 50347595 -67515032 - L1PA12 LINE L1 -5614 1967 1099 561 181 159 0 chr9 50347697 50347835 -67514792 - MSTC LTR MaLR -264 164 5 396 318 99 29 chr9 50347838 50348074 -67514553 + L2 LINE L2 3054 3307 -1 772 54 36 9 chr9 50348074 50348185 -67514442 + L1PA4 LINE L1 6041 6154 -1 567 192 8 77 chr9 50348243 50348373 -67514254 + L1PA12 LINE L1 1 121 -7460 4340 195 14 4 chr9 50348389 50349290 -67513337 + L1PA12 LINE L1 101 1900 -5681 36 23 0 0 chr9 50349747 50349790 -67512837 + AT_rich Low_complexity Low_complexity 1 43 0 1162 280 113 27 chr9 50349842 50350428 -67512199 + L1MC4a LINE L1 5411 6046 -1762 269 233 0 14 chr9 50350760 50350833 -67511794 + (TAA)n Simple_repeat Simple_repeat 1 72 0 735 225 79 59 chr9 50350975 50351228 -67511399 + L1MC5 LINE L1 6642 6899 -1062 22 0 0 0 chr9 50351253 50351275 -67511352 + AT_rich Low_complexity Low_complexity 1 22 0 34 89 0 0 chr9 50351579 50351669 -67510958 + AT_rich Low_complexity Low_complexity 1 90 0 25 0 0 0 chr9 50351725 50351750 -67510877 + AT_rich Low_complexity Low_complexity 1 25 0 213 65 0 0 chr9 50352042 50352073 -67510554 + (TTTTA)n Simple_repeat Simple_repeat 3 33 0 2090 109 0 0 chr9 50352080 50352365 -67510262 - AluY SINE Alu -26 285 1 216 271 21 21 chr9 50352634 50352730 -67509897 + T-rich Low_complexity Low_complexity 2 97 0 207 179 0 0 chr9 50353236 50353275 -67509352 + CT-rich Low_complexity Low_complexity 1 39 0 33 43 0 0 chr9 50353295 50353342 -67509285 + AT_rich Low_complexity Low_complexity 1 47 0 444 206 45 32 chr9 50353361 50353516 -67509111 - L1MC4 LINE L1 -198 7844 7688 423 0 0 0 chr9 50353774 50353821 -67508806 + (TTA)n Simple_repeat Simple_repeat 2 48 0 804 139 0 0 chr9 50353821 50353943 -67508684 - AluSq/x SINE Alu -191 122 1 226 216 0 20 chr9 50355112 50355163 -67507464 - L1MC4 LINE L1 -1332 6710 6661 * 244 294 0 49 chr9 50355132 50355221 -67507406 + L1MC4 LINE L1 6614 6699 -1343 246 32 0 0 chr9 50355221 50355252 -67507375 + (TG)n Simple_repeat Simple_repeat 2 32 0 244 294 0 49 chr9 50355252 50355264 -67507363 + L1MC4 LINE L1 6699 6710 -1332 205 236 0 73 chr9 50355321 50355376 -67507251 + L2 LINE L2 3263 3313 0 532 177 13 215 chr9 50356105 50356342 -67506285 - MER5A DNA MER1_type 0 189 1 306 311 59 25 chr9 50356357 50356476 -67506151 - MER5B DNA MER1_type -8 170 48 575 219 96 27 chr9 50356809 50356955 -67505672 - MER5A DNA MER1_type -32 157 2 2272 108 3 0 chr9 50357325 50357630 -67504997 - AluSx SINE Alu -6 306 1 240 328 86 52 chr9 50357772 50357888 -67504739 - L2 LINE L2 -19 3253 3134 3546 148 55 26 chr9 50358019 50358714 -67503913 + L1MA5 LINE L1 5578 6292 -8 406 294 0 49 chr9 50359770 50359913 -67502714 + MER5B DNA MER1_type 43 178 0 22 0 0 0 chr9 50360245 50360267 -67502360 + AT_rich Low_complexity Low_complexity 1 22 0 37 62 0 0 chr9 50360474 50360539 -67502088 + AT_rich Low_complexity Low_complexity 1 65 0 22 35 0 0 chr9 50360930 50360959 -67501668 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr9 50361328 50361351 -67501276 + AT_rich Low_complexity Low_complexity 1 23 0 189 196 0 0 chr9 50362670 50362716 -67499911 + (TA)n Simple_repeat Simple_repeat 1 46 0 210 37 0 0 chr9 50362799 50362826 -67499801 + (TG)n Simple_repeat Simple_repeat 1 27 0 1089 132 0 0 chr9 50363362 50363514 -67499113 + AluSq SINE Alu 147 298 -15 22 35 0 0 chr9 50363890 50363919 -67498708 + AT_rich Low_complexity Low_complexity 1 29 0 1620 336 138 27 chr9 50364076 50365437 -67497190 + L2 LINE L2 1528 2736 -577 1913 167 63 39 chr9 50365437 50365851 -67496776 - MSTC LTR MaLR 0 428 5 1620 336 138 27 chr9 50365851 50366090 -67496537 + L2 LINE L2 2731 3307 -1 772 54 36 9 chr9 50366090 50366201 -67496426 + L1PA4 LINE L1 6041 6154 -1 6246 79 9 41 chr9 50366273 50367646 -67494981 + L1PA8 LINE L1 4850 6193 0 252 196 49 147 chr9 50367653 50367837 -67494790 - HAL1 LINE L1 -2300 207 42 186 43 0 0 chr9 50367917 50367940 -67494687 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 873 257 43 0 chr9 50368004 50368214 -67494413 + MER20 DNA MER1_type 1 219 0 1623 213 43 19 chr9 50368866 50369237 -67493390 + MLT1B LTR MaLR 1 380 -10 27 49 0 0 chr9 50369445 50369486 -67493141 + AT_rich Low_complexity Low_complexity 1 41 0 2036 197 90 33 chr9 50370722 50371269 -67491358 - L1ME2 LINE L1 -9 6155 5578 1602 189 0 28 chr9 50371290 50371608 -67491019 - AluJo SINE Alu -3 309 1 221 269 42 109 chr9 50371823 50372016 -67490611 + L2 LINE L2 2063 2242 -1072 221 235 0 0 chr9 50372564 50372615 -67490012 + (TG)n Simple_repeat Simple_repeat 2 52 0 26 0 0 0 chr9 50375761 50375787 -67486840 + AT_rich Low_complexity Low_complexity 1 26 0 269 118 20 0 chr9 50375882 50375933 -67486694 + (TCCA)n Simple_repeat Simple_repeat 1 52 0 272 331 36 29 chr9 50376549 50376688 -67485939 - MIR3 SINE MIR -12 196 57 721 191 0 0 chr9 50377200 50377346 -67485281 + FLAM_A SINE Alu 1 146 0 1034 263 126 22 chr9 50378861 50379159 -67483468 - MLT1G LTR MaLR -6 536 165 348 94 0 0 chr9 50379159 50379212 -67483415 + (CA)n Simple_repeat Simple_repeat 2 54 0 1034 263 126 22 chr9 50379212 50379390 -67483237 - MLT1G LTR MaLR -377 165 7 324 281 84 45 chr9 50379425 50379603 -67483024 - MLT1G-int LTR MaLR -33 1338 1154 2025 163 19 16 chr9 50380394 50380768 -67481859 + THE1C LTR MaLR 1 375 0 2676 119 93 9 chr9 50380768 50381220 -67481407 + THE1C-int LTR MaLR 1 490 -1090 2019 129 3 19 chr9 50381216 50381533 -67481094 + THE1C-int LTR MaLR 1269 1580 0 * 2010 151 32 19 chr9 50381533 50381903 -67480724 + THE1C LTR MaLR 1 375 0 299 309 10 0 chr9 50382209 50382306 -67480321 - MLT1G-int LTR MaLR -1269 102 5 725 237 24 12 chr9 50382333 50382502 -67480125 - MLT1G LTR MaLR -16 574 404 207 0 0 0 chr9 50383187 50383210 -67479417 + (TG)n Simple_repeat Simple_repeat 2 24 0 1581 221 21 9 chr9 50383573 50383913 -67478714 + Tigger7 DNA MER2_type 1 344 -389 962 167 0 0 chr9 50383907 50384057 -67478570 + Tigger7 DNA MER2_type 2338 2487 0 * 30417 117 15 59 chr9 50384121 50390559 -67472068 + L1PA7 LINE L1 12 6154 0 23 0 0 0 chr9 50391697 50391720 -67470907 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr9 50392026 50392047 -67470580 + AT_rich Low_complexity Low_complexity 1 21 0 21 89 0 0 chr9 50393165 50393221 -67469406 + AT_rich Low_complexity Low_complexity 1 56 0 195 318 135 0 chr9 50394344 50394470 -67468157 - MIR SINE MIR -44 218 76 340 298 101 54 chr9 50395363 50395937 -67466690 - L1ME4a LINE L1 -5 6099 5499 454 311 92 5 chr9 50396748 50396944 -67465683 + L2 LINE L2 2150 2362 -952 183 80 0 0 chr9 50397322 50397347 -67465280 + (T)n Simple_repeat Simple_repeat 1 25 0 3193 11 14 0 chr9 50397351 50397722 -67464905 - L1HS LINE L1 0 6155 5780 460 400 54 11 chr9 50397769 50398139 -67464488 + L2 LINE L2 2919 3304 -9 549 286 21 13 chr9 50399081 50399319 -67463308 - L1ME4a LINE L1 -1093 5036 4797 428 244 88 110 chr9 50399378 50399915 -67462712 - L1ME4a LINE L1 -4916 1203 679 23 33 0 0 chr9 50399934 50399964 -67462663 + AT_rich Low_complexity Low_complexity 1 30 0 2658 257 61 31 chr9 50400567 50400770 -67461857 + L1M3e LINE L1 1 197 -6910 191 88 29 0 chr9 50400770 50400804 -67461823 + (CATA)n Simple_repeat Simple_repeat 1 35 0 2658 257 61 31 chr9 50400804 50402331 -67460296 + L1M3e LINE L1 197 2927 -4180 5123 156 55 20 chr9 50402350 50403373 -67459254 + L1MA9 LINE L1 5254 6312 0 21 0 0 0 chr9 50403530 50403551 -67459076 + AT_rich Low_complexity Low_complexity 1 21 0 961 119 0 0 chr9 50403589 50403723 -67458904 + AluSc SINE Alu 1 134 -175 2077 123 3 0 chr9 50403723 50404016 -67458611 + AluSg SINE Alu 1 294 -16 186 43 0 0 chr9 50404398 50404421 -67458206 + (TTA)n Simple_repeat Simple_repeat 2 24 0 2148 120 0 3 chr9 50404424 50404723 -67457904 - AluSq SINE Alu -15 298 1 216 326 62 45 chr9 50405779 50405957 -67456670 + L2 LINE L2 3127 3307 -6 613 291 80 41 chr9 50406815 50407188 -67455439 + MLT1J LTR MaLR 69 511 0 184 229 213 0 chr9 50407188 50407249 -67455378 + L2 LINE L2 3238 3311 -2 916 52 22 0 chr9 50407644 50407778 -67454849 + (TCTA)n Simple_repeat Simple_repeat 1 137 0 1600 232 134 9 chr9 50409329 50409791 -67452836 - MLT2B1 LTR ERVL 0 520 1 547 299 11 27 chr9 50410055 50410242 -67452385 - MIR SINE MIR -62 200 17 584 236 110 16 chr9 50413306 50413497 -67449130 + LTR16A1 LTR ERVL 223 431 -26 668 321 77 9 chr9 50413899 50414223 -67448404 + MLT2F LTR ERVL 19 364 -299 1363 292 84 37 chr9 50414224 50414735 -67447892 + HERVL LTR ERVL 4202 4736 -1028 468 284 6 17 chr9 50414731 50414914 -67447713 + HERVL LTR ERVL 5201 5383 -271 * 384 245 31 0 chr9 50414879 50414977 -67447650 - ERVL LTR ERVL -1672 4092 3992 * 382 278 0 19 chr9 50415006 50415114 -67447513 + HERVL LTR ERVL 2425 2530 -3124 368 289 118 15 chr9 50415145 50415280 -67447347 - ERVL LTR ERVL -1279 4485 4337 1152 295 12 6 chr9 50415295 50415637 -67446990 + HERVL LTR ERVL 2583 2926 -2838 759 205 12 18 chr9 50415647 50415813 -67446814 - MLT1D LTR MaLR -8 497 333 435 310 52 67 chr9 50415813 50416144 -67446483 - L2 LINE L2 -273 3040 2715 22 0 0 0 chr9 50416737 50416759 -67445868 + AT_rich Low_complexity Low_complexity 1 22 0 312 333 16 0 chr9 50416958 50417084 -67445543 - MARNA DNA Mariner -29 557 430 499 245 20 61 chr9 50417974 50418130 -67444497 - L1MC/D LINE L1 -614 5745 5584 3562 73 35 0 chr9 50418130 50418622 -67444005 - LTR10D LTR ERV1 0 513 5 499 245 20 61 chr9 50418622 50418644 -67443983 - L1MC/D LINE L1 -775 5584 5573 384 40 0 0 chr9 50418644 50418694 -67443933 + (TG)n Simple_repeat Simple_repeat 2 51 0 499 245 20 61 chr9 50418694 50418710 -67443917 - L1MC/D LINE L1 -786 5573 5558 341 324 29 7 chr9 50418869 50419005 -67443622 - L1MDa LINE L1 -6381 159 21 500 297 96 49 chr9 50420857 50421244 -67441383 + MLT1I LTR MaLR 1 405 -4 230 258 142 33 chr9 50421262 50421382 -67441245 - MIR SINE MIR 0 262 130 406 354 100 12 chr9 50421771 50422011 -67440616 + MIR SINE MIR 2 262 0 188 367 80 0 chr9 50422043 50422193 -67440434 - MIR SINE MIR -1 261 100 1829 245 94 6 chr9 50422673 50423171 -67439456 - MLT1F LTR MaLR 0 542 1 1566 209 0 14 chr9 50424686 50424973 -67437654 + AluJb SINE Alu 1 283 -29 220 348 45 18 chr9 50425095 50425207 -67437420 - MIR SINE MIR -118 144 30 337 336 70 33 chr9 50425699 50425943 -67436684 - L1ME4a LINE L1 -238 5883 5631 682 341 63 47 chr9 50426158 50426651 -67435976 + MLT1K LTR MaLR 86 586 -2 213 39 0 0 chr9 50427076 50427102 -67435525 + (CATATA)n Simple_repeat Simple_repeat 5 30 0 204 205 0 64 chr9 50427331 50427409 -67435218 + T-rich Low_complexity Low_complexity 2 74 0 25 51 0 0 chr9 50427828 50427867 -67434760 + AT_rich Low_complexity Low_complexity 1 39 0 226 119 119 0 chr9 50428744 50428786 -67433841 - Alu SINE Alu -168 134 88 2142 163 75 2 chr9 50429318 50429760 -67432867 - L1MA8 LINE L1 -3 6288 5815 563 158 142 33 chr9 50429788 50429908 -67432719 - FLAM_C SINE Alu 0 133 1 252 93 19 37 chr9 50429910 50429964 -67432663 - L1MA8 LINE L1 -339 5829 5777 30 45 0 0 chr9 50429968 50430012 -67432615 + AT_rich Low_complexity Low_complexity 1 44 0 2786 150 41 6 chr9 50430016 50430583 -67432044 - L1MA8 LINE L1 -521 5791 5208 198 0 0 0 chr9 50431211 50431233 -67431394 + (TA)n Simple_repeat Simple_repeat 2 23 0 450 333 10 0 chr9 50431968 50432118 -67430509 - MIR SINE MIR -64 144 38 180 348 130 11 chr9 50433742 50433834 -67428793 + MIR SINE MIR 6 108 -154 242 325 131 21 chr9 50434021 50434212 -67428415 + MIR SINE MIR 49 260 -2 306 0 0 0 chr9 50435080 50435114 -67427513 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 14344 31 0 0 chr9 50435150 50436887 -67425740 + L1P LINE L1 3667 5403 -743 7670 18 0 0 chr9 50436988 50438368 -67424259 + L1PA3 LINE L1 4803 6182 0 185 270 16 32 chr9 50438424 50438487 -67424140 + MIR SINE MIR 153 214 -48 24 0 0 0 chr9 50438917 50438941 -67423686 + AT_rich Low_complexity Low_complexity 1 24 0 2106 142 0 0 chr9 50438970 50439273 -67423354 - AluSx SINE Alu -9 303 1 266 255 85 9 chr9 50439654 50439760 -67422867 - L1MC/D LINE L1 -1920 5888 5775 22 0 0 0 chr9 50440711 50440733 -67421894 + AT_rich Low_complexity Low_complexity 1 22 0 229 306 118 94 chr9 50442149 50442522 -67420105 + L2 LINE L2 2891 3272 0 2114 117 14 0 chr9 50442631 50442922 -67419705 + AluSx SINE Alu 3 297 -15 1257 237 27 24 chr9 50442923 50443261 -67419366 - MER4D LTR ERV1 -16 887 549 1525 188 28 3 chr9 50443296 50443583 -67419044 - MER49 LTR ERV1 -629 294 1 1305 266 116 18 chr9 50443738 50444290 -67418337 + HsTC2 DNA Tc2 1284 1889 -9 22 0 0 0 chr9 50445623 50445645 -67416982 + AT_rich Low_complexity Low_complexity 1 22 0 385 281 195 14 chr9 50445811 50446021 -67416606 - MIR SINE MIR -10 252 5 275 330 28 0 chr9 50447035 50447141 -67415486 + L3 LINE CR1 1467 1575 -2 1656 161 72 0 chr9 50447271 50447550 -67415077 + AluSx SINE Alu 1 299 -13 2209 41 0 4 chr9 50449894 50450160 -67412467 + AluY SINE Alu 36 300 -11 239 0 0 31 chr9 50451032 50451064 -67411563 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1203 172 5 0 chr9 50451066 50451264 -67411363 - AluSg/x SINE Alu -29 283 85 443 354 14 50 chr9 50451342 50451619 -67411008 + L3 LINE CR1 1171 1437 -140 3758 200 59 65 chr9 50452142 50452522 -67410105 + Tigger6a DNA MER2_type 4 385 -1212 7802 17 0 1 chr9 50452522 50453892 -67408735 + L1PA3 LINE L1 4784 6152 -3 3758 200 59 65 chr9 50453892 50454597 -67408030 + Tigger6a DNA MER2_type 385 1083 0 287 235 35 0 chr9 50455621 50455706 -67406921 - L1ME3A LINE L1 -5 6165 6078 636 248 28 20 chr9 50455751 50456100 -67406527 - L1ME3A LINE L1 -602 5562 5170 271 261 0 58 chr9 50457044 50457113 -67405514 + MIR SINE MIR 3 67 -195 322 293 13 0 chr9 50457130 50457205 -67405422 + MIR SINE MIR 41 116 -146 375 284 50 79 chr9 50458868 50459146 -67403481 + LTR16A1 LTR ERVL 188 457 0 272 281 73 0 chr9 50459185 50459267 -67403360 - L2 LINE L2 0 3272 3185 495 296 10 75 chr9 50459373 50459511 -67403116 + L3 LINE CR1 1271 1394 -183 249 108 0 0 chr9 50459511 50459548 -67403079 + (TTG)n Simple_repeat Simple_repeat 3 39 0 495 296 10 75 chr9 50459548 50459608 -67403019 + L3 LINE CR1 1394 1456 -121 1103 57 0 0 chr9 50459828 50459968 -67402659 + L1PA7 LINE L1 6009 6148 -6 191 133 50 17 chr9 50460286 50460346 -67402281 + (TA)n Simple_repeat Simple_repeat 2 63 0 1566 197 3 7 chr9 50460514 50460820 -67401807 + AluJo SINE Alu 1 305 0 332 389 15 0 chr9 50460825 50460956 -67401671 + L2 LINE L2 3176 3308 -5 202 209 23 0 chr9 50462633 50462676 -67399951 + (CAA)n Simple_repeat Simple_repeat 2 45 0 203 286 0 0 chr9 50463155 50463204 -67399423 - L2 LINE L2 0 3313 3265 1880 153 0 10 chr9 50463389 50463684 -67398943 + AluSx SINE Alu 1 292 -20 2917 208 42 34 chr9 50464059 50464652 -67397975 + LTR58 LTR ERV1 1 601 -78 2647 172 13 118 chr9 50464652 50465424 -67397203 + LTR8 LTR ERV1 1 691 0 2917 208 42 34 chr9 50465424 50465503 -67397124 + LTR58 LTR ERV1 601 678 -1 212 298 105 70 chr9 50466074 50466188 -67396439 - L3 LINE CR1 -2 1575 1458 1004 299 131 42 chr9 50467782 50468749 -67393878 + HAL1 LINE L1 1451 2503 -4 2319 35 42 3 chr9 50469279 50469568 -67393059 - AluY SINE Alu -11 300 1 289 345 72 0 chr9 50469674 50469813 -67392814 + MIR SINE MIR 32 180 -82 188 353 12 24 chr9 50470055 50470140 -67392487 + L2 LINE L2 2985 3068 -204 208 175 25 0 chr9 50470698 50470738 -67391889 + (TAGA)n Simple_repeat Simple_repeat 2 42 0 692 182 19 0 chr9 50471847 50472001 -67390626 - L1MA8 LINE L1 0 6291 6135 619 296 38 28 chr9 50472643 50472934 -67389693 + MARNA DNA Mariner 276 569 -17 690 308 146 31 chr9 50473012 50473457 -67389170 + L2 LINE L2 2810 3305 -8 191 351 75 63 chr9 50473481 50473720 -67388907 - L2 LINE L2 -19 3253 3012 2143 106 10 16 chr9 50475428 50475731 -67386896 + AluSg SINE Alu 1 301 -9 180 0 0 0 chr9 50476922 50476942 -67385685 + (TTA)n Simple_repeat Simple_repeat 2 21 0 8324 197 12 29 chr9 50476996 50478974 -67383653 - L1PA13 LINE L1 -11 6152 4220 198 0 0 0 chr9 50478974 50478996 -67383631 + (GA)n Simple_repeat Simple_repeat 2 23 0 8324 197 12 29 chr9 50478996 50479729 -67382898 - L1PA13 LINE L1 -1943 4220 3476 3186 208 31 8 chr9 50479730 50480501 -67382126 + L1PA13 LINE L1 2673 3461 -2685 811 31 0 0 chr9 50480656 50480752 -67381875 + L1PA3 LINE L1 6054 6149 -6 787 32 0 0 chr9 50480659 50480752 -67381875 + L1PA3 LINE L1 6057 6172 0 208 0 0 0 chr9 50480752 50480775 -67381852 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 22 0 0 0 chr9 50480815 50480837 -67381790 + AT_rich Low_complexity Low_complexity 1 22 0 745 219 91 51 chr9 50482104 50482378 -67380249 + L1ME2 LINE L1 5789 6073 -91 299 288 73 47 chr9 50484247 50484438 -67378189 - LTR50 LTR ERVL -599 196 1 1032 330 24 12 chr9 50484512 50484848 -67377779 + MLT1H LTR MaLR 9 348 -201 728 224 24 12 chr9 50485108 50485354 -67377273 + L1 LINE L1 3090 3338 -2808 459 287 134 16 chr9 50485565 50486053 -67376574 - L1MC5 LINE L1 -496 7495 7089 806 278 54 39 chr9 50486319 50486726 -67375901 + L1MEc LINE L1 1391 1803 -4593 30 27 0 0 chr9 50486772 50486809 -67375818 + AT_rich Low_complexity Low_complexity 1 37 0 245 286 50 25 chr9 50486838 50486957 -67375670 + L1MEc LINE L1 1845 1966 -4430 392 0 21 0 chr9 50489012 50489060 -67373567 + (TTA)n Simple_repeat Simple_repeat 3 51 0 6537 72 15 25 chr9 50489060 50490196 -67372431 - L1PA7 LINE L1 -18 6136 5003 7691 77 24 1 chr9 50490197 50491250 -67371377 + L1PA7 LINE L1 3925 5001 -1145 24 67 0 0 chr9 50493144 50493189 -67369438 + AT_rich Low_complexity Low_complexity 1 45 0 532 324 148 41 chr9 50493374 50493462 -67369165 + L3 LINE CR1 479 556 -1021 2154 123 0 3 chr9 50493462 50493764 -67368863 + AluSx SINE Alu 1 301 -11 532 324 148 41 chr9 50493764 50494188 -67368439 + L3 LINE CR1 556 1046 -531 615 340 102 38 chr9 50494519 50494990 -67367637 + L3 LINE CR1 1074 1574 -3 240 86 0 0 chr9 50495832 50495867 -67366760 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 23 54 0 0 chr9 50498408 50498445 -67364182 + AT_rich Low_complexity Low_complexity 1 37 0 820 216 94 0 chr9 50499139 50499320 -67363307 + MER3 DNA MER1_type 12 209 0 203 234 21 0 chr9 50499664 50499711 -67362916 + (TA)n Simple_repeat Simple_repeat 1 48 0 289 197 33 0 chr9 50500065 50500126 -67362501 - MIR3 SINE MIR -43 165 103 300 349 34 20 chr9 50500138 50500287 -67362340 - L2 LINE L2 -1 3312 3162 1252 306 42 63 chr9 50500297 50501223 -67361404 - L2 LINE L2 0 3313 2407 1948 115 0 0 chr9 50501348 50501638 -67360989 - AluSx SINE Alu 0 312 23 2638 287 76 46 chr9 50501681 50502797 -67359830 - L2 LINE L2 -337 2977 1828 2231 96 0 0 chr9 50503109 50503411 -67359216 - AluY SINE Alu -9 302 1 1524 211 0 24 chr9 50503593 50503904 -67358723 + AluJb SINE Alu 1 304 0 21 36 0 0 chr9 50504741 50504769 -67357858 + AT_rich Low_complexity Low_complexity 1 28 0 1958 110 0 47 chr9 50505199 50505498 -67357129 + AluSx SINE Alu 1 285 -27 196 210 12 161 chr9 50505587 50505600 -67357027 - MIR3 SINE MIR -43 165 152 858 239 28 0 chr9 50505600 50505780 -67356847 + MER5A DNA MER1_type 1 185 -4 196 210 12 161 chr9 50505780 50505847 -67356780 - MIR3 SINE MIR -56 152 97 275 308 19 0 chr9 50506052 50506156 -67356471 + MLT1L LTR MaLR 149 254 -361 262 302 17 17 chr9 50506398 50506514 -67356113 + MLT1K LTR MaLR 464 579 -9 25 0 0 0 chr9 50506914 50506939 -67355688 + AT_rich Low_complexity Low_complexity 1 25 0 1545 168 19 51 chr9 50507148 50507464 -67355163 - AluSg SINE Alu -2 308 3 228 331 67 22 chr9 50508132 50508310 -67354317 - HAL1 LINE L1 -959 1548 1363 315 252 0 54 chr9 50508368 50508515 -67354112 - HAL1 LINE L1 -1399 1108 970 1632 199 27 0 chr9 50510256 50510557 -67352070 + AluJb SINE Alu 1 309 -3 2022 137 7 0 chr9 50510790 50511097 -67351530 + AluSx SINE Alu 1 309 -3 24 32 0 0 chr9 50513520 50513551 -67349076 + AT_rich Low_complexity Low_complexity 1 31 0 2413 101 55 0 chr9 50513739 50514084 -67348543 - THE1B LTR MaLR 0 364 1 196 265 0 20 chr9 50514584 50514633 -67347994 + L2 LINE L2 3225 3272 0 36 23 0 0 chr9 50515664 50515707 -67346920 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr9 50517097 50517120 -67345507 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr9 50517222 50517257 -67345370 + AT_rich Low_complexity Low_complexity 1 35 0 190 234 64 0 chr9 50517445 50517492 -67345135 - L3 LINE CR1 -37 1540 1491 411 297 28 18 chr9 50517604 50517997 -67344630 - L1M4c LINE L1 -4183 3384 2948 311 267 56 11 chr9 50518002 50518092 -67344535 - L1M LINE L1 -730 5391 5298 181 323 0 0 chr9 50518251 50518313 -67344314 - L3 LINE CR1 -453 1124 1063 29 60 0 0 chr9 50518769 50518819 -67343808 + AT_rich Low_complexity Low_complexity 1 50 0 261 0 0 0 chr9 50518999 50519028 -67343599 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2080 111 11 0 chr9 50519031 50519311 -67343316 - AluSp SINE Alu -30 283 1 2142 106 3 3 chr9 50519312 50519615 -67343012 - AluSc SINE Alu -6 303 1 303 270 56 11 chr9 50519685 50519774 -67342853 + L1M LINE L1 5299 5391 -730 9316 242 46 31 chr9 50519779 50520421 -67342206 + L1M1 LINE L1 2948 3579 -3986 1697 131 0 0 chr9 50520421 50520657 -67341970 + AluSq SINE Alu 62 297 -16 9316 242 46 31 chr9 50520657 50520805 -67341822 + L1M1 LINE L1 3579 3723 -3842 1890 114 30 0 chr9 50520805 50521069 -67341558 + AluSx SINE Alu 24 295 -17 9316 242 46 31 chr9 50521069 50523752 -67338875 + L1M1 LINE L1 3723 6528 -1037 1225 184 21 0 chr9 50523745 50523984 -67338643 + L1MB2 LINE L1 5892 6135 -36 * 2087 123 10 0 chr9 50525025 50525326 -67337301 - AluSx SINE Alu -8 304 1 208 356 11 23 chr9 50525575 50525662 -67336965 + MIR SINE MIR 63 148 -114 4088 159 63 17 chr9 50525672 50526815 -67335812 + L1MA7 LINE L1 4468 5659 -632 382 183 0 14 chr9 50526916 50526987 -67335640 + AluJ/FLAM SINE Alu 9 78 -224 3226 172 9 25 chr9 50527002 50527649 -67334978 + L1MA7 LINE L1 5655 6291 0 579 202 0 0 chr9 50527906 50528010 -67334617 - AluJb SINE Alu -29 283 180 1010 181 14 33 chr9 50528025 50528240 -67334387 - AluJb SINE Alu -97 215 5 328 313 104 18 chr9 50528940 50529103 -67333524 + MIR SINE MIR 66 242 -20 939 214 23 27 chr9 50529534 50529754 -67332873 - MER20 DNA MER1_type 0 219 1 811 150 0 50 chr9 50530516 50530676 -67331951 + L1MA10 LINE L1 6179 6330 -4 237 119 0 0 chr9 50530817 50530859 -67331768 + (TG)n Simple_repeat Simple_repeat 2 43 0 2860 159 22 4 chr9 50531206 50531763 -67330864 - Tigger3(Golem) DNA MER2_type -1 3028 2 26 0 0 0 chr9 50532150 50532176 -67330451 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr9 50532597 50532619 -67330008 + AT_rich Low_complexity Low_complexity 1 22 0 2520 58 0 3 chr9 50533205 50533514 -67329113 + AluY SINE Alu 1 308 -3 254 251 127 59 chr9 50534596 50534934 -67327693 + L1MEd LINE L1 745 1105 -5014 1571 229 68 12 chr9 50534955 50535548 -67327079 + L1MEd LINE L1 2852 3477 -2652 1031 285 114 25 chr9 50535557 50535960 -67326667 + LTR40b LTR ERVL 21 459 -3 3481 266 106 10 chr9 50535961 50537503 -67325124 + L1MEd LINE L1 3499 5189 -940 3284 234 57 62 chr9 50537523 50538529 -67324098 + L1MCb LINE L1 1 1010 -5735 2179 123 0 0 chr9 50538529 50538829 -67323798 + AluSq SINE Alu 1 300 -13 3284 234 57 62 chr9 50538829 50539499 -67323128 + L1MCb LINE L1 1010 1871 -4874 210 118 0 0 chr9 50539499 50539533 -67323094 + (TAA)n Simple_repeat Simple_repeat 2 35 0 3284 234 57 62 chr9 50539533 50539978 -67322649 + L1MCb LINE L1 1871 2317 -4428 783 235 0 6 chr9 50539985 50540147 -67322480 + AluJb SINE Alu 129 289 -23 3303 247 47 15 chr9 50540155 50540693 -67321934 + L1MCb LINE L1 2273 2792 -3772 2255 103 3 25 chr9 50540693 50541013 -67321614 - AluSp SINE Alu 0 313 1 3303 247 47 15 chr9 50541013 50541978 -67320649 + L1MCb LINE L1 2792 3824 -2740 540 242 27 21 chr9 50542021 50542207 -67320420 + L1MCb LINE L1 4818 5004 -1560 1613 226 40 48 chr9 50542441 50542896 -67319731 - MLT1D LTR MaLR -3 502 52 21 57 0 0 chr9 50543085 50543120 -67319507 + AT_rich Low_complexity Low_complexity 1 35 0 7516 27 9 0 chr9 50543838 50545359 -67317268 + L1PA3 LINE L1 4626 6155 0 238 67 44 0 chr9 50545386 50545431 -67317196 + A-rich Low_complexity Low_complexity 2 48 0 12230 66 4 1 chr9 50545559 50547174 -67315453 - L1P LINE L1 -4457 1689 70 9426 63 4 2 chr9 50547296 50548551 -67314076 + L1P LINE L1 982 2239 -3907 26 30 0 0 chr9 50549517 50549550 -67313077 + AT_rich Low_complexity Low_complexity 1 33 0 1191 130 5 0 chr9 50549550 50549742 -67312885 - L1PA5 LINE L1 -15 6139 5947 4654 219 36 2 chr9 50549842 50550995 -67311632 + L1 LINE L1 3730 4922 -1224 21 57 0 0 chr9 50551207 50551242 -67311385 + AT_rich Low_complexity Low_complexity 1 35 0 2638 232 12 31 chr9 50552889 50554047 -67308580 - L1PBa LINE L1 -5219 985 1 1614 213 15 34 chr9 50554176 50554584 -67308043 - L1 LINE L1 -1232 4914 4515 8592 222 18 22 chr9 50554587 50554924 -67307703 + L1PA16 LINE L1 1658 1995 -4854 2115 132 0 3 chr9 50554924 50555235 -67307392 + AluSq SINE Alu 1 310 -3 8592 222 18 22 chr9 50555235 50555276 -67307351 + L1PA16 LINE L1 1995 2035 -4814 1062 0 0 0 chr9 50555276 50555396 -67307231 + L1PA2 LINE L1 6036 6155 0 8592 222 18 22 chr9 50555396 50556514 -67306113 + L1PA16 LINE L1 2035 3156 -3693 1941 139 53 51 chr9 50556514 50556888 -67305739 - THE1C LTR MaLR 0 375 1 8592 222 18 22 chr9 50556888 50558632 -67303995 + L1PA16 LINE L1 3156 4891 -1958 637 276 58 31 chr9 50558832 50559121 -67303506 + Tigger1 DNA MER2_type 14 310 -2108 1869 226 11 36 chr9 50559121 50559560 -67303067 - MSTA LTR MaLR 0 428 1 1098 180 83 67 chr9 50559560 50559760 -67302867 + Tigger1 DNA MER2_type 308 516 -1902 1804 179 0 0 chr9 50559760 50560050 -67302577 - AluSx SINE Alu -20 292 3 1098 180 83 67 chr9 50560050 50560149 -67302478 + Tigger1 DNA MER2_type 516 612 -1806 1403 195 40 0 chr9 50560263 50560740 -67301887 + L1PA16 LINE L1 5736 6230 -639 1393 184 21 7 chr9 50560742 50561024 -67301603 + L1PA16 LINE L1 6584 6869 0 892 203 0 16 chr9 50561083 50561265 -67301362 + L1MB3 LINE L1 5935 6113 -70 280 77 0 77 chr9 50561268 50561320 -67301307 + LTR37A LTR ERV1 379 426 0 954 241 0 38 chr9 50562309 50562521 -67300106 + MER8 DNA MER2_type 33 236 -3 500 283 47 5 chr9 50562650 50562841 -67299786 + Charlie8 DNA MER1_type 65 263 -2154 228 277 0 0 chr9 50562832 50562897 -67299730 + Charlie8 DNA MER1_type 2352 2416 -1 * 24 0 0 0 chr9 50563539 50563563 -67299064 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr9 50563880 50563905 -67298722 + AT_rich Low_complexity Low_complexity 1 25 0 324 347 83 28 chr9 50564106 50564394 -67298233 + MER102b DNA MER1_type 2 305 -36 392 293 73 6 chr9 50564422 50564586 -67298041 + MER5B DNA MER1_type 2 176 -2 540 262 62 0 chr9 50564617 50564762 -67297865 + MER5A DNA MER1_type 1 154 -35 193 281 140 0 chr9 50565326 50565383 -67297244 + MIR3 SINE MIR 91 155 -53 200 337 12 23 chr9 50565865 50565951 -67296676 - MIR SINE MIR -155 107 23 198 364 107 21 chr9 50566123 50566263 -67296364 + MIR SINE MIR 109 260 -2 21 0 0 0 chr9 50566516 50566537 -67296090 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr9 50567074 50567101 -67295526 + AT_rich Low_complexity Low_complexity 1 27 0 470 209 0 0 chr9 50567343 50567429 -67295198 + L1MC/D LINE L1 5480 5565 -768 262 45 45 0 chr9 50567470 50567514 -67295113 + (TA)n Simple_repeat Simple_repeat 1 46 0 294 243 54 0 chr9 50567520 50567594 -67295033 + MLT2B1 LTR ERVL 403 480 -40 245 229 38 0 chr9 50567827 50567932 -67294695 + (TA)n Simple_repeat Simple_repeat 1 109 0 1057 222 145 10 chr9 50567950 50568260 -67294367 - MLT2B1 LTR ERVL -19 496 160 8125 51 3 14 chr9 50568381 50569722 -67292905 - L1P2 LINE L1 -503 5651 4329 5736 40 0 0 chr9 50569722 50570417 -67292210 + L1P2 LINE L1 3645 4339 -1807 321 47 0 0 chr9 50570890 50570933 -67291694 + (TA)n Simple_repeat Simple_repeat 2 44 0 2023 47 20 0 chr9 50571067 50571320 -67291307 + AluY SINE Alu 45 302 -9 217 360 99 0 chr9 50571368 50571479 -67291148 - MIR SINE MIR -93 169 48 274 349 37 32 chr9 50571516 50571705 -67290922 - L2 LINE L2 -955 2359 2170 257 303 73 50 chr9 50572176 50572476 -67290151 - L1MC/D LINE L1 -1984 5824 5518 21 112 0 0 chr9 50572922 50573020 -67289607 + AT_rich Low_complexity Low_complexity 1 98 0 437 340 63 14 chr9 50573558 50573843 -67288784 - L1MC/D LINE L1 -2333 3813 3515 354 295 36 47 chr9 50574138 50574316 -67288311 - L1MC/D LINE L1 -2812 3334 3153 351 250 128 32 chr9 50574402 50574558 -67288069 - L1MC/D LINE L1 -3111 3035 2865 254 298 48 0 chr9 50574770 50574854 -67287773 + L2 LINE L2 3219 3306 -7 21 71 0 0 chr9 50575065 50575107 -67287520 + AT_rich Low_complexity Low_complexity 1 42 0 615 237 0 0 chr9 50575580 50575698 -67286929 + FLAM_A SINE Alu 5 122 -11 2475 66 0 0 chr9 50576502 50576807 -67285820 - AluY SINE Alu 0 311 7 679 185 73 0 chr9 50577473 50577624 -67285003 - MLT2B1 LTR ERVL -358 162 1 3635 169 7 33 chr9 50577625 50578313 -67284314 + L1MC1 LINE L1 5576 6245 -88 2862 166 15 4 chr9 50578324 50578794 -67283833 + MLT2B1 LTR ERVL 5 479 -41 534 237 29 14 chr9 50578847 50578986 -67283641 + ERVL-B1 LTR ERVL 3 143 -5621 * 12684 188 18 12 chr9 50578984 50581310 -67281317 + ERVL-B1 LTR ERVL 1354 3692 -2072 9671 182 37 16 chr9 50581310 50583143 -67279484 + ERVL-B1 LTR ERVL 3885 5756 -8 703 171 92 13 chr9 50583167 50583319 -67279308 + ERVL-B1 LTR ERVL 5 168 -352 1657 173 173 16 chr9 50583322 50583692 -67278935 + MSTA LTR MaLR 1 428 0 8650 160 7 36 chr9 50583694 50585318 -67277309 + MSTA-int LTR MaLR 3 1580 0 757 176 279 103 chr9 50585318 50585595 -67277032 + MSTA LTR MaLR 1 343 -32 2151 129 0 0 chr9 50585595 50585897 -67276730 - AluSx SINE Alu -10 302 1 757 176 279 103 chr9 50585897 50585938 -67276689 + MSTA LTR MaLR 343 375 0 1374 269 16 0 chr9 50585938 50586250 -67276377 + MLT2B1 LTR ERVL 164 480 -40 189 0 0 0 chr9 50586256 50586277 -67276350 + (CA)n Simple_repeat Simple_repeat 2 22 0 * 233 206 0 16 chr9 50586276 50586339 -67276288 + (TATATG)n Simple_repeat Simple_repeat 2 63 0 469 194 11 11 chr9 50586350 50586443 -67276184 - Tigger5 DNA MER2_type 0 2323 2231 344 200 0 0 chr9 50586448 50586503 -67276124 - Tigger5 DNA MER2_type -2268 55 1 461 188 0 42 chr9 50586579 50586675 -67275952 + L1MC1 LINE L1 6242 6333 0 21 0 0 0 chr9 50586985 50587006 -67275621 + AT_rich Low_complexity Low_complexity 1 21 0 496 285 110 55 chr9 50587257 50587784 -67274843 + HAL1b LINE L1 99 654 -694 24 32 0 0 chr9 50587949 50587980 -67274647 + AT_rich Low_complexity Low_complexity 1 31 0 180 172 31 16 chr9 50588118 50588182 -67274445 + (TA)n Simple_repeat Simple_repeat 2 66 0 570 313 86 22 chr9 50588756 50589024 -67273603 - MLT1I LTR MaLR -4 405 121 2755 6 0 13 chr9 50589234 50589547 -67273080 + AluYb8 SINE Alu 1 309 -9 22 0 0 0 chr9 50589629 50589651 -67272976 + AT_rich Low_complexity Low_complexity 1 22 0 2455 48 7 0 chr9 50589678 50589973 -67272654 + AluY SINE Alu 1 297 -14 662 295 59 78 chr9 50590090 50590782 -67271845 + L1MC/D LINE L1 3132 3810 -2336 2010 150 0 6 chr9 50591019 50591333 -67271294 - AluSx SINE Alu 0 312 1 312 318 62 40 chr9 50591356 50591731 -67270896 + L1MC/D LINE L1 4076 4468 -1678 420 20 0 0 chr9 50591731 50591780 -67270847 + (GGAA)n Simple_repeat Simple_repeat 4 52 0 312 318 62 40 chr9 50591780 50591933 -67270694 + L1MC/D LINE L1 4468 4616 -1530 219 69 0 0 chr9 50591983 50592012 -67270615 + (GGGA)n Simple_repeat Simple_repeat 1 29 0 325 304 100 56 chr9 50592133 50592884 -67269743 + L1MC/D LINE L1 4882 5373 -773 941 204 82 124 chr9 50593110 50593536 -67269091 + L1ME LINE L1 5396 5803 -363 2509 44 3 0 chr9 50593576 50593874 -67268753 + AluY SINE Alu 1 299 -12 1193 227 26 26 chr9 50594140 50594488 -67268139 - L1MB8 LINE L1 0 6247 5900 241 236 100 18 chr9 50594897 50595007 -67267620 + L1MEd LINE L1 145 263 -5942 345 272 75 66 chr9 50595379 50595607 -67267020 + L1MEd LINE L1 2173 2402 -3994 680 182 33 0 chr9 50596212 50596333 -67266294 - FLAM_C SINE Alu -18 125 1 270 152 76 45 chr9 50596333 50596399 -67266228 - L1MCa LINE L1 -4820 1606 1539 2436 263 151 20 chr9 50596438 50598057 -67264570 - L1MB8 LINE L1 -918 5297 3466 17892 195 22 20 chr9 50598057 50603362 -67259265 + L1PA14 LINE L1 198 5530 -2054 1870 141 51 31 chr9 50603362 50603716 -67258911 - THE1C LTR MaLR 0 375 15 320 122 0 0 chr9 50603727 50603776 -67258851 - THE1C-int LTR MaLR -151 1429 1381 9313 143 43 5 chr9 50603780 50605302 -67257325 - THE1C-int LTR MaLR 0 1580 1 1840 178 27 27 chr9 50605302 50605672 -67256955 - THE1C LTR MaLR 0 375 6 6116 162 14 2 chr9 50605677 50607711 -67254916 + L1PA14 LINE L1 5526 7585 -14 372 279 48 0 chr9 50607720 50607867 -67254760 - L1M4 LINE L1 -1812 4334 4181 2401 268 90 34 chr9 50607882 50608277 -67254350 - L1MB8 LINE L1 -2748 3467 3095 2324 64 0 0 chr9 50608277 50608558 -67254069 - AluY SINE Alu -5 306 26 2401 268 90 34 chr9 50608558 50609759 -67252868 - L1MB8 LINE L1 -3120 3095 1814 311 203 143 38 chr9 50609772 50609786 -67252841 - L1MA10 LINE L1 -3 6331 6318 532 274 101 12 chr9 50609786 50609954 -67252673 - L1ME1 LINE L1 -5 6161 5979 4090 199 61 17 chr9 50609979 50611405 -67251222 - L1MC2 LINE L1 -195 6149 4662 731 279 94 10 chr9 50611416 50611714 -67250913 - L1MCb LINE L1 -5722 323 1 21 0 0 0 chr9 50611746 50611767 -67250860 + AT_rich Low_complexity Low_complexity 1 21 0 255 250 83 0 chr9 50612094 50612178 -67250449 - L1P4 LINE L1 -378 5783 5693 232 206 0 32 chr9 50612957 50613020 -67249607 + T-rich Low_complexity Low_complexity 1 61 0 379 218 30 10 chr9 50614121 50614222 -67248405 - Charlie1b DNA MER1_type 0 523 421 258 105 81 35 chr9 50614227 50614399 -67248228 + (TA)n Simple_repeat Simple_repeat 1 180 0 403 36 115 24 chr9 50614419 50614584 -67248043 + (TA)n Simple_repeat Simple_repeat 1 180 0 1214 230 71 15 chr9 50614611 50615006 -67247621 - Charlie1b DNA MER1_type -71 452 36 24 32 0 0 chr9 50615138 50615169 -67247458 + AT_rich Low_complexity Low_complexity 1 31 0 196 225 0 101 chr9 50615260 50615349 -67247278 - MIR SINE MIR -66 196 117 1818 169 0 0 chr9 50615726 50616040 -67246587 - L1PA13 LINE L1 -3 6160 5847 30 0 0 0 chr9 50617246 50617276 -67245351 + AT_rich Low_complexity Low_complexity 1 30 0 186 389 67 0 chr9 50618133 50618223 -67244404 - L2 LINE L2 -308 2964 2869 2901 72 0 3 chr9 50618900 50619286 -67243341 - L1PA5 LINE L1 -4 6150 5766 17406 167 24 15 chr9 50619386 50626424 -67236203 + L1MA3 LINE L1 623 7722 -2 1563 215 33 6 chr9 50627245 50627580 -67235047 - MER2 DNA MER2_type 0 344 1 333 0 0 0 chr9 50629226 50629263 -67233364 + (TG)n Simple_repeat Simple_repeat 2 38 0 34 24 0 0 chr9 50630608 50630649 -67231978 + AT_rich Low_complexity Low_complexity 1 41 0 240 267 0 0 chr9 50630649 50630709 -67231918 - L2 LINE L2 0 3313 3254 2050 141 3 0 chr9 50632707 50633011 -67229616 + AluSx SINE Alu 1 305 -7 189 348 26 35 chr9 50633045 50633160 -67229467 + MIR SINE MIR 87 200 -62 696 286 18 0 chr9 50633667 50633838 -67228789 + MER5A DNA MER1_type 7 180 -9 235 257 184 28 chr9 50633852 50633961 -67228666 + MIR SINE MIR 124 249 -13 247 320 176 0 chr9 50634213 50634338 -67228289 + MIR SINE MIR 116 262 0 2199 150 57 10 chr9 50634941 50635347 -67227280 + MSTB LTR MaLR 1 425 -1 1219 253 180 36 chr9 50635506 50636005 -67226622 - MLT1E2 LTR MaLR 0 626 56 204 216 0 0 chr9 50636203 50636254 -67226373 + GA-rich Low_complexity Low_complexity 1 51 0 269 145 16 0 chr9 50637317 50637379 -67225248 + CT-rich Low_complexity Low_complexity 2 64 0 264 306 105 8 chr9 50637516 50637640 -67224987 + MLT1K LTR MaLR 453 588 0 207 390 40 0 chr9 50638033 50638133 -67224494 + L2 LINE L2 3208 3311 -2 23 68 0 0 chr9 50638140 50638184 -67224443 + AT_rich Low_complexity Low_complexity 1 44 0 245 138 23 58 chr9 50638275 50638362 -67224265 + (TTATA)n Simple_repeat Simple_repeat 2 85 0 256 303 56 7 chr9 50638629 50638771 -67223856 - L1ME4a LINE L1 0 6121 5973 440 265 69 48 chr9 50638941 50639130 -67223497 - MIR SINE MIR -6 256 64 31 44 0 0 chr9 50639224 50639269 -67223358 + AT_rich Low_complexity Low_complexity 1 45 0 22 99 0 0 chr9 50639982 50640053 -67222574 + AT_rich Low_complexity Low_complexity 1 71 0 206 219 0 0 chr9 50640918 50640959 -67221668 + (TG)n Simple_repeat Simple_repeat 2 42 0 181 315 0 0 chr9 50641885 50641939 -67220688 - MIR SINE MIR -70 138 85 207 230 27 0 chr9 50642437 50642511 -67220116 + (TA)n Simple_repeat Simple_repeat 1 76 0 309 227 28 5 chr9 50642602 50642822 -67219805 + (TA)n Simple_repeat Simple_repeat 1 225 0 1978 226 57 49 chr9 50643331 50643986 -67218641 + L1MC4 LINE L1 7382 8041 -1 972 182 138 26 chr9 50644359 50644433 -67218194 + Tigger2 DNA MER2_type 2462 2526 -192 2162 100 0 0 chr9 50644433 50644732 -67217895 + AluSc SINE Alu 1 299 0 972 182 138 26 chr9 50644732 50644887 -67217740 + Tigger2 DNA MER2_type 2526 2718 0 218 289 24 48 chr9 50644913 50644996 -67217631 - L2 LINE L2 -18 3254 3174 2425 75 0 0 chr9 50645072 50645377 -67217250 + AluY SINE Alu 1 305 -6 838 273 128 7 chr9 50645793 50646090 -67216537 - MER46C DNA MER2_type 0 338 6 203 374 20 20 chr9 50646568 50646667 -67215960 - L2 LINE L2 -647 2667 2569 1912 94 66 7 chr9 50646981 50647267 -67215360 - AluSp SINE Alu -10 303 1 2475 146 39 12 chr9 50647461 50647893 -67214734 + MER65A LTR ERV1 1 444 -1 411 21 0 0 chr9 50647893 50647941 -67214686 + (TCTA)n Simple_repeat Simple_repeat 1 48 0 271 234 0 16 chr9 50648830 50648894 -67213733 + MER6A DNA MER2_type -1 61 -544 1789 148 3 19 chr9 50648894 50649245 -67213382 - MER4A LTR ERV1 0 664 261 570 96 32 11 chr9 50649245 50649339 -67213288 - MER4A LTR ERV1 -566 98 3 3240 144 28 4 chr9 50649345 50649878 -67212749 + MER6A DNA MER2_type 58 603 -2 455 219 42 0 chr9 50650048 50650167 -67212460 - L1 LINE L1 -1449 4697 4574 277 206 0 52 chr9 50650188 50650285 -67212342 - L1MC4 LINE L1 -1337 6705 6614 256 154 0 77 chr9 50650290 50650368 -67212259 + (TATATG)n Simple_repeat Simple_repeat 6 77 0 236 222 0 91 chr9 50650371 50650470 -67212157 - L1MC4 LINE L1 -1339 6703 6614 * 255 247 22 34 chr9 50650448 50650537 -67212090 + L1MC4 LINE L1 6616 6703 -1339 189 107 0 0 chr9 50650538 50650566 -67212061 + (TA)n Simple_repeat Simple_repeat 1 28 0 256 115 73 167 chr9 50650913 50650979 -67211648 - L1M LINE L1 -763 5405 5349 2190 107 52 20 chr9 50650979 50651326 -67211301 - L1PA10 LINE L1 -11 6157 5800 256 115 73 167 chr9 50651326 50651355 -67211272 - L1M LINE L1 -819 5349 5319 320 33 16 49 chr9 50651360 50651421 -67211206 + (TTTC)n Simple_repeat Simple_repeat 2 60 0 8438 198 47 22 chr9 50651423 50653225 -67209402 - L1 LINE L1 -840 5306 3551 2285 115 0 0 chr9 50653225 50653538 -67209089 - AluSq SINE Alu 0 313 1 8438 198 47 22 chr9 50653538 50653725 -67208902 - L1 LINE L1 -2595 3551 3263 2135 106 7 7 chr9 50653725 50654026 -67208601 - AluSg1 SINE Alu -6 303 3 8438 198 47 22 chr9 50654026 50654048 -67208579 - L1 LINE L1 -2883 3263 3243 1798 197 11 8 chr9 50654067 50654433 -67208194 + L1MA9 LINE L1 5427 5793 -519 387 129 86 0 chr9 50654466 50654536 -67208091 + L1MA9 LINE L1 6153 6228 -84 579 211 66 0 chr9 50654600 50654752 -67207875 + L1MA9 LINE L1 6151 6312 0 211 236 18 0 chr9 50655440 50655495 -67207132 + (TATATG)n Simple_repeat Simple_repeat 4 59 0 336 173 13 13 chr9 50657101 50657176 -67205451 + Tigger2 DNA MER2_type 1 75 -2643 689 219 19 13 chr9 50657212 50657367 -67205260 - MER8 DNA MER2_type -62 177 22 1707 83 9 18 chr9 50658080 50658308 -67204319 + AluSp SINE Alu 70 295 -18 21 0 0 0 chr9 50658691 50658712 -67203915 + AT_rich Low_complexity Low_complexity 1 21 0 37 0 0 0 chr9 50659968 50660005 -67202622 + AT_rich Low_complexity Low_complexity 1 37 0 388 314 127 56 chr9 50660076 50660487 -67202140 + L1ME LINE L1 49 488 -5582 355 309 77 29 chr9 50661334 50661606 -67201021 - HAL1 LINE L1 -838 1669 1385 329 281 93 40 chr9 50661683 50661774 -67200853 - L1MEd LINE L1 -4924 1195 1110 2110 132 7 3 chr9 50661774 50662084 -67200543 - AluSx SINE Alu -1 311 1 329 281 93 40 chr9 50662084 50662465 -67200162 - L1MEd LINE L1 -5009 1110 698 1866 116 60 28 chr9 50662476 50662794 -67199833 + MER52C LTR ERV1 951 1278 0 643 365 29 18 chr9 50662810 50663191 -67199436 - L1MEd LINE L1 -5460 659 275 265 372 116 15 chr9 50663460 50663659 -67198968 + L2 LINE L2 2685 2903 -411 404 293 40 10 chr9 50663942 50664041 -67198586 - L2 LINE L2 0 3272 3171 247 344 0 0 chr9 50664056 50664120 -67198507 + L2 LINE L2 3207 3270 -2 215 234 13 0 chr9 50665387 50665464 -67197163 + (CATATA)n Simple_repeat Simple_repeat 1 78 0 6893 66 0 0 chr9 50666032 50666996 -67195631 - L1PA6 LINE L1 -7 6147 5188 23 0 0 0 chr9 50667349 50667372 -67195255 + AT_rich Low_complexity Low_complexity 1 23 0 223 264 0 0 chr9 50667765 50667818 -67194809 + CT-rich Low_complexity Low_complexity 1 53 0 539 241 9 0 chr9 50668244 50668360 -67194267 - MIR SINE MIR -10 252 136 1328 203 65 0 chr9 50668546 50668691 -67193936 - AluJo SINE Alu -31 281 147 396 0 0 0 chr9 50668691 50668735 -67193892 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 1328 203 65 0 chr9 50668735 50668850 -67193777 - AluJo SINE Alu -165 147 4 193 354 0 13 chr9 50668975 50669054 -67193573 + L2 LINE L2 2997 3074 -198 216 0 0 0 chr9 50669678 50669702 -67192925 + (TA)n Simple_repeat Simple_repeat 2 25 0 249 308 0 0 chr9 50670343 50670421 -67192206 + CT-rich Low_complexity Low_complexity 3 80 0 224 400 0 0 chr9 50670680 50670775 -67191852 + MIR SINE MIR 5 99 -163 1513 236 45 43 chr9 50671162 50671581 -67191046 - MLT1E LTR MaLR -2 591 172 635 231 8 0 chr9 50671682 50671803 -67190824 - MLT1E LTR MaLR -421 172 51 474 364 100 28 chr9 50671827 50672465 -67190162 + L2 LINE L2 227 910 -2404 515 295 22 0 chr9 50672789 50672928 -67189699 - MIR SINE MIR 0 262 121 183 153 0 51 chr9 50673076 50673135 -67189492 + (TATATG)n Simple_repeat Simple_repeat 1 56 0 28 29 0 0 chr9 50673177 50673212 -67189415 + AT_rich Low_complexity Low_complexity 1 35 0 1884 162 71 0 chr9 50674024 50674375 -67188252 - L1MB1 LINE L1 -39 6129 5754 403 367 16 27 chr9 50674601 50674789 -67187838 + MER115 DNA AcHobo 251 436 -257 5132 124 7 0 chr9 50674862 50675628 -67186999 - L1PA15 LINE L1 -13 6152 5382 7036 246 40 12 chr9 50675636 50678177 -67184450 - L1PA13 LINE L1 -2780 4017 1298 1166 132 0 17 chr9 50678177 50678351 -67184276 - LTR8 LTR ERV1 0 691 521 1028 169 12 43 chr9 50678470 50678724 -67183903 - SVA Other Other -708 678 433 3058 137 18 62 chr9 50678755 50679303 -67183324 - LTR8 LTR ERV1 -167 524 1 2822 201 22 14 chr9 50679412 50680397 -67182230 - L1M3 LINE L1 -402 5766 4776 1502 214 25 33 chr9 50680397 50680761 -67181866 - MLT1A1 LTR MaLR -4 361 1 2822 201 22 14 chr9 50680761 50680800 -67181827 - L1M3 LINE L1 -1392 4776 4739 935 209 38 9 chr9 50680800 50681010 -67181617 - Tigger1 DNA MER2_type 0 2418 2203 2322 140 8 16 chr9 50681010 50681388 -67181239 - THE1C LTR MaLR 0 375 1 1754 161 57 21 chr9 50681388 50681723 -67180904 - THE1C-int LTR MaLR 0 1580 1234 598 89 22 0 chr9 50681823 50681913 -67180714 - Tigger1 DNA MER2_type -950 1468 1377 354 361 75 52 chr9 50681920 50682305 -67180322 + L1M2 LINE L1 4 397 -6452 180 143 0 57 chr9 50682855 50682890 -67179737 + L3b LINE CR1 1421 1453 -130 265 286 0 0 chr9 50683179 50683249 -67179378 + L1PA15-16 LINE L1 1474 1543 -5306 294 321 38 19 chr9 50683274 50683433 -67179194 + L1PA15-16 LINE L1 1355 1516 -5334 4015 229 29 10 chr9 50683449 50684493 -67178134 + L1PA15-16 LINE L1 1539 2626 -4223 3040 147 2 2 chr9 50684493 50684969 -67177658 - Tigger1 DNA MER2_type -1028 1390 915 1443 111 30 42 chr9 50684989 50685251 -67177376 - Tigger1 DNA MER2_type -2148 270 12 1427 203 12 45 chr9 50685255 50685308 -67177319 - L1M3 LINE L1 -1406 4740 4687 2044 124 7 7 chr9 50685308 50685646 -67176981 - AluSx SINE Alu 0 312 1 1427 203 12 45 chr9 50685646 50686016 -67176611 - L1M3 LINE L1 -1459 4687 4331 * 4019 174 10 23 chr9 50686014 50686926 -67175701 + L1M3 LINE L1 3433 4332 -1814 207 108 0 27 chr9 50689449 50689486 -67173141 + (TTTTTA)n Simple_repeat Simple_repeat 5 40 0 21 0 0 0 chr9 50689490 50689511 -67173116 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr9 50689900 50689923 -67172704 + AT_rich Low_complexity Low_complexity 1 23 0 3521 51 2 7 chr9 50690077 50690527 -67172100 + LTR7 LTR ERV1 1 448 -2 18810 94 12 25 chr9 50690529 50693557 -67169070 + HERVH LTR ERV1 1 2987 -4726 818 155 20 0 chr9 50693551 50693699 -67168928 + HERVH LTR ERV1 3140 3290 -4423 * 3172 119 0 6 chr9 50693689 50694194 -67168433 + HERVH LTR ERV1 3492 3993 -3720 3989 149 1 1 chr9 50694196 50694858 -67167769 + HERVH LTR ERV1 4488 5149 -2564 1261 138 18 9 chr9 50694859 50695077 -67167550 + HERVH LTR ERV1 5600 5819 -1894 2163 105 45 18 chr9 50695077 50695457 -67167170 + HERVH LTR ERV1 7324 7713 0 3304 55 0 59 chr9 50695457 50695933 -67166694 + LTR7 LTR ERV1 1 448 -2 251 86 0 0 chr9 50696002 50696037 -67166590 - LTR7 LTR ERV1 -415 35 1 4533 126 68 51 chr9 50696148 50696596 -67166031 + MER4D LTR ERV1 1 440 -463 2189 112 3 0 chr9 50696596 50696891 -67165736 + AluSg SINE Alu 1 296 -14 4533 126 68 51 chr9 50696891 50697322 -67165305 + MER4D LTR ERV1 440 895 -8 189 0 0 0 chr9 50698265 50698286 -67164341 + (A)n Simple_repeat Simple_repeat 1 21 0 309 329 7 29 chr9 50698349 50698489 -67164138 + L1ME4a LINE L1 5769 5905 -216 21 0 0 0 chr9 50698505 50698526 -67164101 + AT_rich Low_complexity Low_complexity 1 21 0 301 234 53 0 chr9 50698539 50698633 -67163994 + L1ME LINE L1 5740 5838 -328 775 136 71 14 chr9 50698640 50698780 -67163847 + THE1C LTR MaLR 1 148 -227 1545 111 0 5 chr9 50798781 50798988 -67063639 - AluSx SINE Alu -106 206 1 277 240 29 97 chr9 50799020 50799129 -67063498 - L1ME LINE L1 -376 5745 5651 2016 121 3 3 chr9 50799129 50799418 -67063209 + AluSg SINE Alu 1 289 -21 277 240 29 97 chr9 50799418 50799483 -67063144 - L1ME LINE L1 -470 5651 5583 542 178 0 0 chr9 50799910 50800000 -67062627 - U13 snRNA snRNA -14 90 1 24 91 0 0 chr9 50800387 50800453 -67062174 + AT_rich Low_complexity Low_complexity 1 66 0 434 73 0 15 chr9 50800853 50800921 -67061706 + (TG)n Simple_repeat Simple_repeat 1 67 0 185 143 48 0 chr9 50800929 50800971 -67061656 + CT-rich Low_complexity Low_complexity 1 44 0 23 54 0 0 chr9 50800995 50801032 -67061595 + GC_rich Low_complexity Low_complexity 1 37 0 851 148 0 0 chr9 50801041 50801210 -67061417 + (C)n Simple_repeat Simple_repeat 1 169 0 306 0 0 0 chr9 50801471 50801505 -67061122 + (TC)n Simple_repeat Simple_repeat 1 34 0 1048 131 3 3 chr9 50802029 50802335 -67060292 + (TTCC)n Simple_repeat Simple_repeat 1 306 0 247 260 55 71 chr9 50804385 50804512 -67058115 + L2 LINE L2 2139 2263 -1051 2001 95 34 17 chr9 50805028 50805322 -67057305 + L1PB1 LINE L1 5853 6151 0 2608 36 7 3 chr9 50805491 50805795 -67056832 + AluY SINE Alu 1 305 -6 361 354 51 6 chr9 50806936 50807094 -67055533 + MIR SINE MIR 26 190 -72 1376 139 44 36 chr9 50807183 50807254 -67055373 - MSTB1 LTR MaLR 0 432 363 2767 29 0 0 chr9 50807254 50807563 -67055064 + AluY SINE Alu 1 309 -2 1376 139 44 36 chr9 50807563 50807743 -67054884 - MSTB1 LTR MaLR -69 363 179 188 143 0 0 chr9 50807960 50807995 -67054632 - L2 LINE L2 -2 3311 3277 2151 109 3 0 chr9 50807997 50808291 -67054336 + AluSc SINE Alu 1 295 -14 358 282 55 60 chr9 50808869 50809234 -67053393 - L1M4 LINE L1 -1487 4659 4297 334 351 20 12 chr9 50809481 50809628 -67052999 + MIR SINE MIR 23 163 -58 225 346 87 0 chr9 50809658 50809762 -67052865 - L2 LINE L2 -2 3311 3199 2255 76 3 17 chr9 50809998 50810299 -67052328 - L1PA13 LINE L1 0 6163 5867 356 266 121 0 chr9 50810633 50810757 -67051870 - MIR SINE MIR 0 262 124 452 283 83 17 chr9 50811826 50812036 -67050591 - MIR SINE MIR -32 230 8 1264 171 122 65 chr9 50812306 50812675 -67049952 - L1MD3 LINE L1 -18 7977 7588 1920 147 7 0 chr9 50813076 50813361 -67049266 - AluSx SINE Alu -21 291 5 204 347 0 0 chr9 50813543 50813615 -67049012 - MIR SINE MIR -115 147 76 1994 254 26 22 chr9 50814125 50814673 -67047954 - L1ME4a LINE L1 -94 6027 5474 1247 233 69 46 chr9 50815873 50816307 -67046320 - L1ME3A LINE L1 -158 6012 5569 250 45 45 0 chr9 50817393 50817437 -67045190 + (TC)n Simple_repeat Simple_repeat 2 47 0 22 35 0 0 chr9 50817490 50817519 -67045108 + AT_rich Low_complexity Low_complexity 1 29 0 1540 146 14 41 chr9 50817526 50817820 -67044807 + L1MB7 LINE L1 5883 6168 -16 453 36 0 0 chr9 50818526 50818581 -67044046 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 1620 115 172 0 chr9 50818581 50818825 -67043802 - AluSx SINE Alu -26 286 1 484 199 84 23 chr9 50820744 50820875 -67041752 - MIR SINE MIR 0 262 124 24 32 0 0 chr9 50821272 50821303 -67041324 + AT_rich Low_complexity Low_complexity 1 31 0 1559 114 71 8 chr9 50821305 50821560 -67041067 - L1PA16 LINE L1 -9 6157 5887 738 166 101 96 chr9 50822324 50822414 -67040213 - MER3 DNA MER1_type -2 207 119 2167 101 10 7 chr9 50822414 50822720 -67039907 - AluSx SINE Alu -2 310 4 738 166 101 96 chr9 50822720 50822828 -67039799 - MER3 DNA MER1_type -90 119 8 402 236 186 7 chr9 50822849 50822989 -67039638 - MER5A DNA MER1_type -6 183 19 402 190 0 0 chr9 50823401 50823517 -67039110 + C-rich Low_complexity Low_complexity 1 116 0 326 192 116 75 chr9 50823856 50824002 -67038625 + L1ME4a LINE L1 5910 6061 -60 6086 63 4 0 chr9 50824020 50824739 -67037888 - L1PA6 LINE L1 -2 6152 5431 544 285 57 6 chr9 50825428 50825586 -67037041 + MIR SINE MIR 31 196 -66 555 73 0 49 chr9 50825656 50825738 -67036889 + L1PA11 LINE L1 6095 6172 -2 987 202 0 6 chr9 50826039 50826212 -67036415 + MER58A DNA MER1_type 37 208 -16 2085 120 36 3 chr9 50826428 50826729 -67035898 - AluSx SINE Alu 0 312 2 4008 174 25 33 chr9 50827245 50828029 -67034598 - L1 LINE L1 -1862 4284 3506 196 30 61 0 chr9 50828029 50828062 -67034565 + (TTG)n Simple_repeat Simple_repeat 1 35 0 4008 174 25 33 chr9 50828062 50828088 -67034539 - L1 LINE L1 -2640 3506 3481 1540 166 38 0 chr9 50828189 50828454 -67034173 - MER2 DNA MER2_type -28 317 43 2022 149 0 7 chr9 50828919 50829220 -67033407 - AluJo SINE Alu -13 299 1 885 271 160 45 chr9 50829275 50829918 -67032709 + L1MC4a LINE L1 5408 6124 -1684 3000 64 0 6 chr9 50830271 50830628 -67031999 - THE1A LTR MaLR 0 355 1 263 243 0 29 chr9 50830936 50831006 -67031621 - AluJ/monomer SINE Alu 0 302 235 242 326 11 33 chr9 50831040 50831132 -67031495 + L2 LINE L2 3179 3268 -4 315 321 143 12 chr9 50831596 50831764 -67030863 + MIR SINE MIR 40 229 -33 664 283 164 20 chr9 50831771 50832125 -67030502 + MLT1I LTR MaLR 1 405 -4 370 342 33 0 chr9 50832946 50833066 -67029561 + MIR SINE MIR 40 163 -99 219 301 86 0 chr9 50833053 50833146 -67029481 - MIR SINE MIR 0 262 162 * 2303 86 0 0 chr9 50833163 50833443 -67029184 - AluSx SINE Alu -9 303 24 2274 114 0 7 chr9 50834218 50834526 -67028101 + AluSq SINE Alu 1 306 -7 1186 139 0 0 chr9 50834814 50834979 -67027648 + AluSg/x SINE Alu 133 297 -13 357 264 39 31 chr9 50835281 50835410 -67027217 + L1ME LINE L1 6 135 -5935 659 289 123 16 chr9 50835619 50835937 -67026690 - L1M4 LINE L1 -2623 3523 3172 666 265 105 49 chr9 50835938 50836244 -67026383 + L1ME1 LINE L1 5825 6147 -19 1144 52 0 0 chr9 50836249 50836406 -67026221 - AluY SINE Alu 0 311 155 23 0 0 0 chr9 50836410 50836433 -67026194 + AT_rich Low_complexity Low_complexity 1 23 0 2373 108 0 0 chr9 50836882 50837187 -67025440 + AluSq SINE Alu 1 305 -8 423 301 82 64 chr9 50837629 50837916 -67024711 + MLT1I LTR MaLR 75 370 -39 2119 104 0 69 chr9 50837916 50838234 -67024393 + AluSx SINE Alu 1 296 -16 423 301 82 64 chr9 50838234 50838275 -67024352 + MLT1I LTR MaLR 370 409 0 697 227 74 0 chr9 50838565 50838741 -67023886 - MER3 DNA MER1_type -19 190 2 4189 149 108 25 chr9 50839636 50840475 -67022152 + L1MC2 LINE L1 5434 6342 -2 276 318 32 56 chr9 50840591 50840843 -67021784 + L2 LINE L2 2140 2385 -929 1414 209 46 40 chr9 50840884 50841234 -67021393 + MLT1H1 LTR MaLR 203 554 -1 181 162 0 27 chr9 50843122 50843159 -67019468 + MIR SINE MIR 116 151 -111 279 277 227 0 chr9 50843421 50843540 -67019087 - MER117 DNA MER1_type -51 146 1 657 264 40 0 chr9 50843893 50844067 -67018560 - MIR SINE MIR -14 248 68 408 313 185 0 chr9 50844439 50844650 -67017977 + MIR SINE MIR 13 262 0 237 189 19 0 chr9 50847035 50847088 -67015539 + MIR SINE MIR 29 82 -126 194 250 31 0 chr9 50847353 50847417 -67015210 + MIR SINE MIR 112 177 -85 539 320 26 5 chr9 50848647 50848841 -67013786 - MIR SINE MIR -11 251 54 2236 82 0 4 chr9 50849306 50849640 -67012987 + AluSg SINE Alu 1 333 0 2170 89 33 26 chr9 50850966 50851268 -67011359 + AluSp SINE Alu 1 304 -9 337 213 98 11 chr9 50853100 50853294 -67009333 - MLT1F LTR MaLR 0 542 342 449 33 0 17 chr9 50853324 50853384 -67009243 + (TC)n Simple_repeat Simple_repeat 2 60 0 1098 204 111 77 chr9 50853923 50854300 -67008327 - MLT1E2 LTR MaLR -226 400 11 370 338 44 10 chr9 50854813 50855017 -67007610 - L3 LINE CR1 -162 1415 1205 405 281 8 25 chr9 50855072 50855193 -67007434 + L2 LINE L2 3188 3306 -7 1215 37 0 0 chr9 50856084 50856220 -67006407 - AluY SINE Alu -19 292 157 2316 87 29 26 chr9 50857256 50857605 -67005022 + AluSp SINE Alu 1 350 0 233 183 141 0 chr9 50857800 50857871 -67004756 - HsTC2 DNA Tc2 -1814 84 4 276 30 0 0 chr9 50858235 50858268 -67004359 + (CA)n Simple_repeat Simple_repeat 1 33 0 528 46 46 0 chr9 50858561 50858648 -67003979 + (TAGA)n Simple_repeat Simple_repeat 2 92 0 686 292 39 30 chr9 50858838 50859170 -67003457 - L1MC4a LINE L1 -1867 5941 5607 188 338 89 36 chr9 50859439 50859664 -67002963 - L3 LINE CR1 -238 1339 1103 25 0 0 0 chr9 50860254 50860279 -67002348 + AT_rich Low_complexity Low_complexity 1 25 0 2246 112 0 7 chr9 50860834 50861139 -67001488 - AluSq SINE Alu -10 303 1 2817 126 9 2 chr9 50861153 50861583 -67001044 + L1PA16 LINE L1 5730 6162 -4 202 232 18 71 chr9 50861585 50861697 -67000930 - L2 LINE L2 -97 3216 3111 186 43 0 0 chr9 50862299 50862322 -67000305 + (TG)n Simple_repeat Simple_repeat 2 24 0 239 286 185 42 chr9 50862470 50862659 -66999968 + MIR SINE MIR 20 235 -27 193 177 0 48 chr9 50862740 50862802 -66999825 + (TATG)n Simple_repeat Simple_repeat 1 59 0 846 282 61 39 chr9 50862812 50862887 -66999740 - L1ME LINE L1 -403 5767 5695 2287 108 0 3 chr9 50862887 50863182 -66999445 - AluSx SINE Alu -18 294 1 846 282 61 39 chr9 50863182 50863564 -66999063 - L1ME LINE L1 -475 5695 5295 180 158 0 0 chr9 50863588 50863626 -66999001 + (TA)n Simple_repeat Simple_repeat 2 39 0 209 322 11 23 chr9 50864092 50864179 -66998448 - MER5A DNA MER1_type -70 119 34 376 207 12 24 chr9 50864673 50864755 -66997872 - MER5A DNA MER1_type -98 91 11 2306 91 0 10 chr9 50865348 50865655 -66996972 - AluSq SINE Alu -9 304 1 185 265 181 12 chr9 50865663 50865746 -66996881 + L2 LINE L2 2693 2789 -525 869 272 37 20 chr9 50866911 50867209 -66995418 - LTR16C LTR ERVL 0 491 189 877 137 0 0 chr9 50867956 50868080 -66994547 + AluSx SINE Alu 1 124 -189 541 89 68 13 chr9 50868080 50868530 -66994097 + (TA)n Simple_repeat Simple_repeat 1 474 0 1206 114 0 84 chr9 50868530 50868732 -66993895 + AluSx SINE Alu 123 307 -3 401 262 257 5 chr9 50868803 50868990 -66993637 - MIR SINE MIR -2 260 27 2622 145 34 0 chr9 50869148 50869561 -66993066 - MSTA LTR MaLR 0 428 2 1501 198 96 16 chr9 50869813 50870176 -66992451 - MER119 DNA MER1_type 0 583 192 828 133 31 0 chr9 50870244 50870372 -66992255 + FLAM_C SINE Alu 2 133 0 3856 191 29 15 chr9 50870500 50871386 -66991241 - L1 LINE L1 -2823 4025 3127 1121 314 81 7 chr9 50872027 50872435 -66990192 - L1 LINE L1 -6399 450 13 1615 226 85 7 chr9 50872442 50872888 -66989739 + L1ME3A LINE L1 5410 5890 -280 1220 185 52 13 chr9 50872888 50873227 -66989400 + MSTC LTR MaLR 1 428 0 333 271 0 0 chr9 50873227 50873312 -66989315 + L1ME3A LINE L1 5886 5970 -200 881 273 86 27 chr9 50873324 50873731 -66988896 + L1ME3 LINE L1 5521 5951 -211 1726 136 56 0 chr9 50874511 50874798 -66987829 + L1PB4 LINE L1 5841 6143 -13 26 0 0 0 chr9 50874798 50874824 -66987803 + AT_rich Low_complexity Low_complexity 1 26 0 2033 129 7 0 chr9 50874826 50875105 -66987522 - AluJb SINE Alu -23 289 9 661 68 43 0 chr9 50875212 50875329 -66987298 + (TA)n Simple_repeat Simple_repeat 1 122 0 4549 154 14 10 chr9 50875331 50876705 -66985922 - L1P5 LINE L1 -372 5779 4396 369 0 0 0 chr9 50876705 50876746 -66985881 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 4549 154 14 10 chr9 50876746 50876802 -66985825 - L1P5 LINE L1 -1755 4396 4342 309 180 0 0 chr9 50877452 50877513 -66985114 + MIR SINE MIR 111 171 -91 1165 264 61 3 chr9 50877513 50877823 -66984804 - MER58B DNA MER1_type 0 341 14 400 301 146 19 chr9 50879536 50879858 -66982769 - L2 LINE L2 -4 3309 2947 747 173 8 15 chr9 50880052 50880185 -66982442 - FLAM_C SINE Alu -11 132 1 285 29 0 0 chr9 50881333 50881367 -66981260 + (TC)n Simple_repeat Simple_repeat 1 34 0 237 279 43 75 chr9 50881718 50881879 -66980748 - MIR SINE MIR -98 164 9 547 69 0 23 chr9 50881947 50882034 -66980593 + (TAGA)n Simple_repeat Simple_repeat 4 88 0 256 253 12 78 chr9 50883130 50883322 -66979305 - Charlie8 DNA MER1_type -1000 1417 156 2518 168 74 14 chr9 50883639 50884086 -66978541 + MLT2B1 LTR ERVL 1 481 -39 402 100 0 0 chr9 50884086 50884146 -66978481 + (TG)n Simple_repeat Simple_repeat 2 61 0 2518 168 74 14 chr9 50884146 50884187 -66978440 + MLT2B1 LTR ERVL 481 518 -2 213 291 39 10 chr9 50884208 50884311 -66978316 - MIR SINE MIR -73 189 84 366 232 232 0 chr9 50884647 50884759 -66977868 - MER5A DNA MER1_type -1 188 51 996 88 0 0 chr9 50884764 50884889 -66977738 + AluSc SINE Alu 1 125 -184 468 254 215 24 chr9 50885357 50885687 -66976940 + L2 LINE L2 1712 2104 -1210 417 254 133 8 chr9 50885725 50885965 -66976662 + L1ME4a LINE L1 5675 5944 -177 276 149 0 0 chr9 50885966 50886013 -66976614 + (CA)n Simple_repeat Simple_repeat 2 48 0 970 158 0 55 chr9 50886043 50886226 -66976401 - AluJo SINE Alu -139 173 1 449 223 18 18 chr9 50887124 50887236 -66975391 - MER103 DNA DNA -1 165 54 460 207 57 36 chr9 50889734 50889874 -66972753 + MER103 DNA DNA 22 164 -2 279 0 0 0 chr9 50890016 50890047 -66972580 + (TG)n Simple_repeat Simple_repeat 1 31 0 204 97 0 0 chr9 50890047 50890078 -66972549 + (GA)n Simple_repeat Simple_repeat 2 32 0 1890 104 77 0 chr9 50890753 50891043 -66971584 + AluSx SINE Alu 2 311 0 1234 232 71 67 chr9 50891961 50892410 -66970217 - LTR37B LTR ERV1 -2 466 16 180 0 0 0 chr9 50892650 50892670 -66969957 + (T)n Simple_repeat Simple_repeat 1 20 0 297 0 0 0 chr9 50892960 50892993 -66969634 + (CA)n Simple_repeat Simple_repeat 2 34 0 357 263 53 53 chr9 50893553 50893686 -66968941 + MER5A DNA MER1_type 16 148 -41 2189 107 7 13 chr9 50894323 50894632 -66967995 + AluJb SINE Alu 1 307 -5 322 297 20 0 chr9 50895015 50895116 -66967511 - MIR SINE MIR -113 149 47 3902 111 35 6 chr9 50895499 50896011 -66966616 + MER1A DNA MER1_type 1 527 0 1230 107 7 0 chr9 50896312 50896490 -66966137 - L1P5 LINE L1 -531 5620 5440 881 232 47 0 chr9 50896599 50896789 -66965838 - MER58A DNA MER1_type -25 199 1 1716 100 4 0 chr9 50897080 50897309 -66965318 - AluSp SINE Alu -83 230 1 266 169 15 0 chr9 50898550 50898615 -66964012 + (TCCA)n Simple_repeat Simple_repeat 4 69 0 281 362 53 0 chr9 50899206 50899300 -66963327 - MIR SINE MIR -67 141 43 568 253 65 39 chr9 50899514 50899743 -66962884 + L1MCc LINE L1 11 245 -6178 269 296 11 0 chr9 50901149 50901237 -66961390 - MIR SINE MIR -27 235 147 1206 211 46 4 chr9 50901314 50901574 -66961053 - MER58B DNA MER1_type 0 341 71 269 118 26 26 chr9 50901706 50901782 -66960845 + (CA)n Simple_repeat Simple_repeat 1 76 0 438 158 18 35 chr9 50901796 50901967 -66960660 + (CA)n Simple_repeat Simple_repeat 2 169 0 5879 130 7 15 chr9 50902130 50903228 -66959399 - L1PB2 LINE L1 -8 6143 5053 392 294 173 45 chr9 50903286 50903881 -66958746 + L2 LINE L2 1705 2375 -939 275 264 91 0 chr9 50903923 50904033 -66958594 - MER112 DNA MER1_type 0 260 141 548 209 8 47 chr9 50904065 50904194 -66958433 + L2 LINE L2 3189 3312 -1 291 220 0 0 chr9 50904194 50904253 -66958374 - MER112 DNA MER1_type -189 71 13 573 72 0 0 chr9 50904597 50904680 -66957947 + (GA)n Simple_repeat Simple_repeat 2 84 0 492 270 51 39 chr9 50904819 50904997 -66957630 - L2 LINE L2 -2 3311 3132 2207 94 0 56 chr9 50905658 50905978 -66956649 + AluY SINE Alu 1 302 -9 619 277 118 57 chr9 50906081 50906572 -66956055 + LTR33 LTR ERVL 1 521 0 1213 250 25 25 chr9 50906693 50907089 -66955538 - L1M4 LINE L1 -768 5378 4983 1318 150 29 12 chr9 50907089 50907329 -66955298 - L1MB7 LINE L1 0 6184 5941 380 230 50 79 chr9 50908048 50908187 -66954440 + L2 LINE L2 3174 3308 -5 321 202 167 0 chr9 50908234 50908318 -66954309 + MER5A DNA MER1_type 9 106 -83 971 160 17 44 chr9 50908529 50908710 -66953917 - MER5B DNA MER1_type 0 178 3 2323 156 39 21 chr9 50909531 50909968 -66952659 + L1M3 LINE L1 5377 5821 -362 190 295 252 14 chr9 50910027 50910166 -66952461 + L2 LINE L2 3142 3313 0 24 0 0 0 chr9 50910178 50910202 -66952425 + AT_rich Low_complexity Low_complexity 1 24 0 796 204 0 0 chr9 50910314 50910446 -66952181 + AluJo SINE Alu 2 133 -169 500 219 19 12 chr9 50910458 50910618 -66952009 + GA-rich Low_complexity Low_complexity 2 162 0 810 176 20 7 chr9 50910618 50910766 -66951861 + AluJo SINE Alu 129 278 -34 838 175 11 6 chr9 50910770 50910947 -66951680 + GA-rich Low_complexity Low_complexity 3 180 0 252 0 0 0 chr9 50910950 50910978 -66951649 + (GGAA)n Simple_repeat Simple_repeat 3 30 0 1159 281 37 41 chr9 50910982 50911464 -66951163 + L1ME3A LINE L1 5383 5864 -306 1466 205 84 16 chr9 50911464 50911643 -66950984 - MER2 DNA MER2_type 0 344 179 2269 91 3 0 chr9 50911643 50911930 -66950697 - AluSp SINE Alu -14 299 12 1466 205 84 16 chr9 50911930 50912072 -66950555 - MER2 DNA MER2_type -165 179 1 1159 281 37 41 chr9 50912072 50912155 -66950472 + L1ME3A LINE L1 5864 5946 -224 512 220 53 33 chr9 50912886 50913036 -66949591 + MER103 DNA DNA 14 166 0 976 146 82 23 chr9 50913180 50913400 -66949227 - L1MC4a LINE L1 -679 7129 6897 181 245 0 0 chr9 50913404 50913453 -66949174 + MIR SINE MIR 83 131 -77 300 296 61 0 chr9 50913648 50913746 -66948881 + MIR SINE MIR 25 128 -134 225 308 81 81 chr9 50913811 50913983 -66948644 + MER5A DNA MER1_type 18 189 0 615 201 182 0 chr9 50914805 50914959 -66947668 - L1MB5 LINE L1 -6 6168 5987 1973 157 0 7 chr9 50914964 50915269 -66947358 - AluJb SINE Alu -9 303 1 283 234 0 16 chr9 50915857 50915921 -66946706 + MER112 DNA MER1_type 2 64 -196 219 36 0 0 chr9 50915923 50915951 -66946676 + (CA)n Simple_repeat Simple_repeat 2 29 0 641 273 66 20 chr9 50916114 50916312 -66946315 - MIR SINE MIR -46 216 10 330 160 187 0 chr9 50916534 50916609 -66946018 + MIR3 SINE MIR 82 170 -38 384 259 182 28 chr9 50917890 50918033 -66944594 + MER5A DNA MER1_type 25 189 0 684 300 86 41 chr9 50919602 50920417 -66942210 - L1ME2 LINE L1 -226 5938 5084 3729 192 32 14 chr9 50920911 50921620 -66941007 - MER72 LTR ERV1 0 722 1 1648 124 29 7 chr9 50921941 50922214 -66940413 - L1MA8 LINE L1 -5 6286 6008 300 325 52 19 chr9 50922218 50922372 -66940255 + MER20 DNA MER1_type 57 215 -4 269 276 171 32 chr9 50922374 50922497 -66940130 - MIR3 SINE MIR -51 157 18 1318 191 13 4 chr9 50923263 50923499 -66939128 - MIR SINE MIR -6 256 19 604 292 68 42 chr9 50924269 50924505 -66938122 - MIR SINE MIR -1 261 20 303 28 0 0 chr9 50925873 50925909 -66936718 + (GA)n Simple_repeat Simple_repeat 1 36 0 578 301 141 22 chr9 50926108 50926470 -66936157 - MLT1I LTR MaLR -4 405 1 4181 120 49 21 chr9 50926498 50927154 -66935473 - L1MC1 LINE L1 0 6333 5660 242 281 167 62 chr9 50927553 50927763 -66934864 + MER102b DNA MER1_type 109 340 -1 1090 47 0 0 chr9 50928976 50929104 -66933523 + L1PA4 LINE L1 6025 6152 -3 322 269 0 13 chr9 50930066 50930144 -66932483 - MIR SINE MIR -139 123 47 3233 201 29 80 chr9 50930249 50931196 -66931431 + L1M4 LINE L1 3969 4866 -1280 481 259 94 67 chr9 50931493 50931717 -66930910 - MIR SINE MIR -5 257 28 501 211 0 0 chr9 50931779 50931878 -66930749 - MIR3 SINE MIR -6 202 103 1061 289 65 38 chr9 50931937 50932335 -66930292 - MLT1I LTR MaLR 0 409 1 2466 90 3 0 chr9 50933329 50933640 -66928987 - AluSq SINE Alu 0 313 2 283 305 11 0 chr9 50934125 50934220 -66928407 - MIR SINE MIR 0 262 167 279 140 0 0 chr9 50934496 50934546 -66928081 + (CA)n Simple_repeat Simple_repeat 1 50 0 1744 151 36 23 chr9 50935002 50935306 -66927321 + AluSq SINE Alu 1 308 -5 2461 142 4 9 chr9 50935862 50936503 -66926124 - L1P4 LINE L1 -560 5606 4971 450 157 0 0 chr9 50936528 50936611 -66926016 + (CA)n Simple_repeat Simple_repeat 2 84 0 919 219 5 0 chr9 50938874 50939089 -66923538 - L1P LINE L1 -961 5185 4970 288 145 43 51 chr9 50939518 50939635 -66922992 + (TA)n Simple_repeat Simple_repeat 2 117 0 2004 153 0 0 chr9 50940868 50941169 -66921458 + AluSx SINE Alu 1 301 -11 1639 172 0 8 chr9 50941710 50941977 -66920650 - AluJo SINE Alu -14 298 34 2083 141 125 10 chr9 50942162 50942546 -66920081 - MSTA LTR MaLR 0 428 1 196 264 57 19 chr9 50943075 50943128 -66919499 + MIR3 SINE MIR 127 181 -27 493 292 86 72 chr9 50944515 50944711 -66917916 + LTR16C LTR ERVL 138 343 -148 1373 176 59 96 chr9 50944711 50945098 -66917529 - MLT1A2 LTR MaLR -1 373 1 493 292 86 72 chr9 50945098 50945250 -66917377 + LTR16C LTR ERVL 343 491 0 279 198 62 31 chr9 50945618 50945714 -66916913 - L1MC4a LINE L1 -1639 6169 6071 1255 209 171 23 chr9 50946014 50946425 -66916202 + MLT1D LTR MaLR 7 467 0 317 194 194 0 chr9 50946467 50946570 -66916057 - L2 LINE L2 -219 3053 2931 2176 126 7 3 chr9 50946649 50946959 -66915668 - AluSx SINE Alu 0 312 2 192 225 67 67 chr9 50946979 50947068 -66915559 - MIR3 SINE MIR -38 170 82 213 114 0 0 chr9 50948232 50948253 -66914374 + (TAA)n Simple_repeat Simple_repeat 2 25 -11 2728 94 13 11 chr9 50948253 50948627 -66914000 - THE1C LTR MaLR 0 375 1 213 114 0 0 chr9 50948627 50948640 -66913987 + (TAA)n Simple_repeat Simple_repeat 24 36 0 2107 144 0 3 chr9 50949709 50950021 -66912606 + AluSx SINE Alu 1 311 -1 750 139 0 9 chr9 50950283 50950398 -66912229 + FLAM_C SINE Alu 4 117 -16 286 259 199 8 chr9 50954038 50954169 -66908458 + MER5B DNA MER1_type 1 156 -22 349 230 230 7 chr9 50954483 50954635 -66907992 + MIR SINE MIR 48 233 -29 260 337 51 0 chr9 50956002 50956100 -66906527 + MIR SINE MIR 30 132 -76 365 216 54 88 chr9 50956321 50956469 -66906158 + MER103 DNA DNA 4 146 -20 423 289 77 49 chr9 50959158 50959633 -66902994 + L1ME LINE L1 529 1059 -5099 2279 111 0 0 chr9 50960249 50960547 -66902080 + AluSx SINE Alu 1 298 -14 25 0 0 68 chr9 51060679 51060723 -66801904 + AT_rich Low_complexity Low_complexity 1 41 0 8425 213 55 56 chr9 51060835 51063326 -66799301 - MER65A-int LTR ERV1 -2377 2494 7 2437 154 9 44 chr9 51063329 51063784 -66798843 - MER65A LTR ERV1 -2 443 5 1554 256 46 16 chr9 51063787 51064225 -66798402 - MLT1D LTR MaLR -52 453 3 265 228 206 11 chr9 51064718 51064810 -66797817 + L2 LINE L2 3201 3310 -3 23 0 0 0 chr9 51066711 51066734 -66795893 + AT_rich Low_complexity Low_complexity 1 23 0 223 256 0 0 chr9 51066807 51066850 -66795777 + L2 LINE L2 3249 3291 -22 2288 170 6 44 chr9 51067070 51067547 -66795080 + L1MB4 LINE L1 5303 5761 -422 1130 129 0 55 chr9 51067544 51067746 -66794881 - L1PA16 LINE L1 -254 5912 5722 * 1154 204 29 0 chr9 51067761 51068001 -66794626 + L1MB4 LINE L1 5772 6018 -162 245 234 0 0 chr9 51068102 51068149 -66794478 + L2 LINE L2 3007 3053 -219 307 325 47 63 chr9 51068611 51068802 -66793825 - MIR SINE MIR -62 200 13 2023 127 0 3 chr9 51069048 51069339 -66793288 + AluSq SINE Alu 1 290 -23 201 74 0 0 chr9 51069340 51069367 -66793260 + (TAGA)n Simple_repeat Simple_repeat 4 30 0 963 195 108 22 chr9 51069393 51069624 -66793003 - L1MD1 LINE L1 0 6242 5992 548 138 43 11 chr9 51069635 51069729 -66792898 - L1MD1 LINE L1 -499 5860 5764 772 184 61 31 chr9 51069733 51069896 -66792731 + MER74A LTR ERVL 1 168 -390 3456 137 101 51 chr9 51069937 51070739 -66791888 - MER21A LTR ERV1 -16 915 1 1738 221 48 0 chr9 51070739 51071090 -66791537 + MER74A LTR ERVL 191 558 0 672 233 0 0 chr9 51071097 51071230 -66791397 - L1MD1 LINE L1 -511 5731 5599 431 234 43 0 chr9 51071248 51071342 -66791285 - MIR SINE MIR -78 184 87 342 0 0 0 chr9 51071465 51071503 -66791124 + (TAA)n Simple_repeat Simple_repeat 3 40 0 201 147 0 0 chr9 51072110 51072144 -66790483 + (TTG)n Simple_repeat Simple_repeat 3 36 0 436 325 90 16 chr9 51072431 51072742 -66789885 - L1ME3A LINE L1 -243 5927 5594 449 289 75 23 chr9 51072761 51072934 -66789693 - LTR33 LTR ERVL -14 507 326 475 301 140 5 chr9 51073016 51073202 -66789425 - LTR33 LTR ERVL -310 211 1 601 302 94 8 chr9 51073210 51073475 -66789152 - L1ME3A LINE L1 -580 5584 5297 1979 120 34 0 chr9 51073521 51073839 -66788788 - AluSx SINE Alu 0 312 1 3346 272 41 44 chr9 51074893 51076423 -66786204 + L1M4 LINE L1 2975 4499 -1647 2737 248 54 36 chr9 51076454 51078010 -66784617 + L1ME2 LINE L1 4375 5981 -183 2534 45 0 10 chr9 51078010 51078323 -66784304 + AluY SINE Alu 1 310 -1 2737 248 54 36 chr9 51078323 51078510 -66784117 + L1ME2 LINE L1 5981 6163 -1 27 73 0 0 chr9 51078672 51078727 -66783900 + AT_rich Low_complexity Low_complexity 1 55 0 2119 95 21 0 chr9 51079241 51079524 -66783103 + AluSq SINE Alu 1 289 -24 304 261 27 0 chr9 51079585 51079696 -66782931 + (TA)n Simple_repeat Simple_repeat 2 115 0 32 26 0 0 chr9 51079696 51079735 -66782892 + AT_rich Low_complexity Low_complexity 1 39 0 212 226 53 30 chr9 51079775 51079908 -66782719 + (CATTA)n Simple_repeat Simple_repeat 3 138 0 * 273 147 77 28 chr9 51079835 51079978 -66782649 + (TATAA)n Simple_repeat Simple_repeat 5 154 0 327 302 77 33 chr9 51080399 51080581 -66782046 - Charlie8 DNA MER1_type -2143 274 85 26 30 0 0 chr9 51082430 51082463 -66780164 + AT_rich Low_complexity Low_complexity 1 33 0 797 320 28 0 chr9 51083407 51083657 -66778970 + MIR SINE MIR 5 261 -1 1008 205 62 33 chr9 51086007 51086183 -66776444 - MER20 DNA MER1_type -2 217 33 1406 208 124 14 chr9 51086183 51086539 -66776088 - MSTD LTR MaLR 0 396 2 1008 205 62 33 chr9 51086539 51086572 -66776055 - MER20 DNA MER1_type -186 33 2 2869 231 50 3 chr9 51086682 51087284 -66775343 + L1MB8 LINE L1 2629 3202 -2944 264 59 0 0 chr9 51087284 51087318 -66775309 + (CA)n Simple_repeat Simple_repeat 1 34 0 186 43 0 0 chr9 51087317 51087340 -66775287 + (GA)n Simple_repeat Simple_repeat 2 24 0 * 2869 231 50 3 chr9 51087318 51087602 -66775025 + L1MB8 LINE L1 3202 3533 -2613 662 200 55 0 chr9 51087743 51087888 -66774739 + L1MB8 LINE L1 3560 3712 -2434 4089 176 47 46 chr9 51087988 51089134 -66773493 + L1MB8 LINE L1 5027 6176 -2 1873 143 11 0 chr9 51089335 51089622 -66773005 - AluSx SINE Alu -20 292 3 221 269 115 48 chr9 51089686 51089790 -66772837 - L2 LINE L2 -19 3294 3184 201 314 0 0 chr9 51089843 51089894 -66772733 - L2 LINE L2 -343 2970 2920 393 322 0 0 chr9 51089995 51090110 -66772517 - L2 LINE L2 -1331 1983 1869 2108 198 26 62 chr9 51090114 51090610 -66772017 + MLT2B1 LTR ERVL 1 478 -42 341 22 22 0 chr9 51090610 51090656 -66771971 + (TAGA)n Simple_repeat Simple_repeat 1 47 0 2108 198 26 62 chr9 51090656 51090695 -66771932 + MLT2B1 LTR ERVL 478 517 -3 2047 198 60 35 chr9 51090772 51091252 -66771375 - MLT1D LTR MaLR -13 492 1 432 243 89 89 chr9 51092290 51092525 -66770102 + LTR16C LTR ERVL 1 235 -256 256 290 159 0 chr9 51092529 51092636 -66769991 + LTR16C LTR ERVL 354 477 -14 916 59 0 0 chr9 51093454 51093572 -66769055 - L1P LINE L1 -1208 4938 4821 1098 38 0 0 chr9 51093572 51093703 -66768924 + L1P LINE L1 3790 3920 -2226 248 300 10 20 chr9 51094265 51094365 -66768262 - MIR SINE MIR -96 166 68 2853 233 42 35 chr9 51094580 51095563 -66767064 - L1ME1 LINE L1 -5 6161 5166 1722 183 0 3 chr9 51095563 51095864 -66766763 - AluSx SINE Alu -12 300 1 2853 233 42 35 chr9 51095864 51095914 -66766713 - L1ME1 LINE L1 -1000 5166 5118 306 294 89 30 chr9 51096752 51096920 -66765707 - LTR50 LTR ERVL -324 197 24 307 338 220 31 chr9 51097138 51098316 -66764311 + L2 LINE L2 987 2387 -927 1779 210 113 87 chr9 51099164 51099896 -66762731 + LTR1B LTR ERV1 1 751 -75 622 276 55 0 chr9 51100031 51100230 -66762397 + MER63A DNA MER1_type 1 210 0 3626 197 82 18 chr9 51100529 51101531 -66761096 - L1MB8 LINE L1 -1 6177 5101 192 97 0 0 chr9 51101531 51101562 -66761065 + (TG)n Simple_repeat Simple_repeat 2 32 0 3626 197 82 18 chr9 51101562 51101684 -66760943 - L1MB8 LINE L1 -1077 5101 4988 1501 273 87 29 chr9 51103529 51104118 -66758509 - L1ME3A LINE L1 -12 6158 5536 198 231 215 50 chr9 51104485 51104606 -66758021 + MIR SINE MIR 122 262 0 446 220 64 46 chr9 51104883 51105056 -66757571 + ORSL DNA AcHobo 44 219 -56 206 81 27 0 chr9 51105064 51105101 -66757526 + (TC)n Simple_repeat Simple_repeat 1 38 0 30 0 0 0 chr9 51105853 51105883 -66756744 + AT_rich Low_complexity Low_complexity 1 30 0 506 292 68 77 chr9 51109640 51110059 -66752568 + MLT1H1 LTR MaLR 66 595 0 195 114 0 0 chr9 51110316 51110351 -66752276 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 187 327 71 26 chr9 51111441 51111554 -66751073 + MER5A DNA MER1_type 66 183 -6 294 265 49 20 chr9 51111970 51112072 -66750555 + HAL1b LINE L1 365 469 -879 735 50 0 0 chr9 51112278 51112378 -66750249 + AluY SINE Alu 210 309 -2 2136 120 3 3 chr9 51112386 51112687 -66749940 + AluSq SINE Alu 1 301 -12 31627 101 8 17 chr9 51113316 51116746 -66745881 - L1P3 LINE L1 -514 5955 2503 2494 71 0 0 chr9 51116746 51117043 -66745584 - AluY SINE Alu -11 300 4 31627 101 8 17 chr9 51117043 51118765 -66743862 - L1P3 LINE L1 -3966 2503 768 5943 104 0 19 chr9 51118891 51119727 -66742900 - L1P3 LINE L1 -5634 827 8 303 205 205 0 chr9 51119737 51119815 -66742812 - MIR SINE MIR -102 160 67 4766 168 33 15 chr9 51119902 51121661 -66740966 - L1PA16 LINE L1 -97 6069 4280 552 190 0 26 chr9 51121662 51121778 -66740849 + Charlie1 DNA MER1_type 2630 2742 -19 305 156 0 16 chr9 51122857 51122921 -66739706 + T-rich Low_complexity Low_complexity 1 63 0 995 167 5 66 chr9 51122923 51123121 -66739506 - AluJb SINE Alu 0 312 127 314 196 0 0 chr9 51123121 51123181 -66739446 - Alu SINE Alu -254 46 1 1147 299 65 35 chr9 51123294 51123752 -66738875 + LTR33 LTR ERVL 38 509 -12 475 275 67 7 chr9 51123852 51124001 -66738626 - MIR SINE MIR -1 261 104 2779 13 0 0 chr9 51124501 51124806 -66737821 + AluY SINE Alu 1 305 -6 362 351 51 2 chr9 51125547 51125686 -66736941 - MIR3 SINE MIR -10 198 54 22 0 0 0 chr9 51126616 51126638 -66735989 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr9 51126838 51126865 -66735762 + AT_rich Low_complexity Low_complexity 1 27 0 246 62 0 0 chr9 51126910 51126942 -66735685 + (CA)n Simple_repeat Simple_repeat 1 32 0 24 67 0 0 chr9 51127124 51127169 -66735458 + AT_rich Low_complexity Low_complexity 1 45 0 344 274 0 0 chr9 51127541 51127614 -66735013 - AluJ/FLAM SINE Alu -218 84 12 9750 221 44 21 chr9 51127621 51129204 -66733423 + L1PA16 LINE L1 3066 4612 -1554 234 0 0 0 chr9 51129204 51129230 -66733397 + (CAA)n Simple_repeat Simple_repeat 2 27 0 9750 221 44 21 chr9 51129230 51131609 -66731018 + L1PA16 LINE L1 4612 6160 -6 767 212 249 21 chr9 51131614 51131882 -66730745 + L1MC4 LINE L1 7163 7369 -673 1936 189 117 13 chr9 51131882 51132336 -66730291 + MLT1D LTR MaLR 1 501 -4 767 212 249 21 chr9 51132336 51132573 -66730054 + L1MC4 LINE L1 7369 7898 -144 1826 326 76 32 chr9 51132597 51133563 -66729064 - L2 LINE L2 -2188 1126 119 8922 196 34 15 chr9 51133675 51133819 -66728808 - L1MA9 LINE L1 -343 5969 5829 1985 118 28 0 chr9 51133819 51134107 -66728520 - AluSx SINE Alu -16 296 1 8922 196 34 15 chr9 51134107 51136578 -66726049 - L1MA9 LINE L1 -483 5829 3301 202 231 0 0 chr9 51138328 51138367 -66724260 + A-rich Low_complexity Low_complexity 2 40 0 2955 153 50 7 chr9 51138969 51139533 -66723094 + L1MA8 LINE L1 5657 6244 -47 1522 153 0 4 chr9 51139535 51139784 -66722843 + L1PA13 LINE L1 3565 3812 -2334 6063 103 12 3 chr9 51139785 51140830 -66721797 + L1PA13 LINE L1 5109 6162 -1 237 191 0 0 chr9 51140837 51140884 -66721743 + L1MA8 LINE L1 6240 6286 -5 255 378 7 40 chr9 51140930 51141078 -66721549 + MIR SINE MIR 63 205 -57 4618 204 31 20 chr9 51141265 51143312 -66719315 - L1MB8 LINE L1 -2 6176 4109 22 70 0 0 chr9 51144104 51144147 -66718480 + AT_rich Low_complexity Low_complexity 1 43 0 251 244 26 13 chr9 51144565 51144643 -66717984 - L1MC/D LINE L1 -2041 5750 5672 224 204 41 0 chr9 51144949 51144998 -66717629 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 1148 201 160 38 chr9 51145037 51145169 -66717458 + MLT1A1 LTR MaLR 1 115 -250 542 131 61 10 chr9 51145169 51145268 -66717359 + L1PA7 LINE L1 6043 6146 -8 1148 201 160 38 chr9 51145268 51145453 -66717174 + MLT1A1 LTR MaLR 115 357 -8 498 295 76 52 chr9 51145575 51145785 -66716842 + MIR SINE MIR 4 218 -44 295 200 27 13 chr9 51146099 51146174 -66716453 + L1MC4a LINE L1 5853 5928 -1880 1047 269 141 43 chr9 51146205 51147514 -66715113 - L1MC/D LINE L1 -913 5216 3781 1144 204 47 2 chr9 51147552 51148000 -66714627 - LTR54 LTR ERV1 -2 496 3 743 283 83 42 chr9 51148012 51148355 -66714272 - L1MC/D LINE L1 -2371 3758 3431 1303 185 115 0 chr9 51148355 51148615 -66714012 + AluJo SINE Alu 1 290 -22 743 283 83 42 chr9 51148615 51149097 -66713530 - L1MC/D LINE L1 -2698 3431 2899 1586 198 9 21 chr9 51149185 51149514 -66713113 + MER2 DNA MER2_type 2 326 -19 486 272 56 84 chr9 51149563 51149883 -66712744 - L1MC/D LINE L1 -5090 1029 719 8881 25 0 0 chr9 51150080 51151121 -66711506 - L1PA3 LINE L1 -1316 4830 3790 7808 18 0 0 chr9 51151121 51152453 -66710174 + L1PA3 LINE L1 4821 6152 -3 189 0 0 0 chr9 51153053 51153074 -66709553 + (CA)n Simple_repeat Simple_repeat 2 22 0 2061 133 0 0 chr9 51153138 51153423 -66709204 + AluSx SINE Alu 14 298 -14 5577 136 24 8 chr9 51153525 51154468 -66708159 - Tigger3b DNA MER2_type 0 1231 274 577 159 0 0 chr9 51154466 51154554 -66708073 - Tigger3b DNA MER2_type -1129 102 15 * 208 211 0 0 chr9 51155373 51155411 -66707216 + CT-rich Low_complexity Low_complexity 3 40 0 1915 154 43 6 chr9 51156580 51156904 -66705723 - MER1B DNA MER1_type -1 336 1 301 272 130 42 chr9 51156908 51157147 -66705480 + L1MEd LINE L1 646 905 -5214 2207 76 4 0 chr9 51157154 51157430 -66705197 + AluSp SINE Alu 35 311 -2 353 229 115 41 chr9 51157534 51157778 -66704849 + L1MC5 LINE L1 7541 7802 -159 936 273 105 60 chr9 51158336 51158819 -66703808 - MLT1L LTR MaLR -3 612 97 1367 99 56 5 chr9 51158819 51159032 -66703595 - L1PA8 LINE L1 0 6172 5949 936 273 105 60 chr9 51159032 51159131 -66703496 - MLT1L LTR MaLR -518 97 4 23 33 0 0 chr9 51159372 51159402 -66703225 + AT_rich Low_complexity Low_complexity 1 30 0 450 0 0 0 chr9 51159952 51160002 -66702625 + (TG)n Simple_repeat Simple_repeat 2 51 0 466 181 68 30 chr9 51160596 51160729 -66701898 + LTR19A LTR ERV1 345 482 -4 21 0 0 0 chr9 51161207 51161228 -66701399 + AT_rich Low_complexity Low_complexity 1 21 0 446 230 44 9 chr9 51163863 51163976 -66698651 + MER5A DNA MER1_type 46 162 -27 638 327 40 9 chr9 51164260 51164486 -66698141 + MIR SINE MIR 30 262 0 779 250 61 0 chr9 51164529 51164709 -66697918 - MIR SINE MIR -49 213 23 207 299 11 11 chr9 51165599 51165686 -66696941 + L2 LINE L2 1814 1900 -1414 317 354 73 6 chr9 51165710 51165888 -66696739 + L1MC/D LINE L1 5634 5823 -1985 4647 139 65 51 chr9 51167234 51168642 -66693985 - pTR5 LTR ERV1 -143 2295 743 288 320 47 35 chr9 51168958 51169130 -66693497 - LTR67 LTR ERVL -54 503 330 324 188 94 31 chr9 51169720 51169816 -66692811 - MIR SINE MIR -123 139 38 1275 197 102 54 chr9 51170053 51170661 -66691966 - Charlie2 DNA MER1_type 0 2862 2226 183 291 200 54 chr9 51170710 51171005 -66691622 + L2 LINE L2 2324 2661 -653 2007 155 3 0 chr9 51171158 51171461 -66691166 + AluSx SINE Alu 1 304 -8 2318 60 0 17 chr9 51172381 51172679 -66689948 + AluY SINE Alu 1 293 -18 21 36 0 0 chr9 51172924 51172952 -66689675 + AT_rich Low_complexity Low_complexity 1 28 0 407 193 26 23 chr9 51173820 51173942 -66688685 - MIR SINE MIR -63 145 31 2420 85 3 0 chr9 51174364 51174670 -66687957 + AluSg SINE Alu 1 307 -3 377 292 93 105 chr9 51176342 51176495 -66686132 - LTR16A LTR ERVL -35 415 262 1419 199 4 11 chr9 51176495 51176771 -66685856 + L1PB4 LINE L1 5881 6154 -2 377 292 93 105 chr9 51176771 51176970 -66685657 - LTR16A LTR ERVL -188 262 67 978 274 73 67 chr9 51180413 51181139 -66681488 + L2 LINE L2 2592 3313 0 24 32 0 0 chr9 51181578 51181609 -66681018 + AT_rich Low_complexity Low_complexity 1 31 0 188 328 24 64 chr9 51181917 51182042 -66680585 + MIR SINE MIR 100 219 -43 325 246 85 85 chr9 51182718 51182935 -66679692 + MIR SINE MIR 4 213 -49 22 0 0 0 chr9 51183644 51183666 -66678961 + AT_rich Low_complexity Low_complexity 1 22 0 2145 120 0 0 chr9 51184199 51184482 -66678145 + AluSx SINE Alu 1 283 -29 234 0 0 0 chr9 51184485 51184511 -66678116 + (CA)n Simple_repeat Simple_repeat 1 26 0 598 194 36 56 chr9 51184673 51184869 -66677758 - L1MA9 LINE L1 -38 6274 6083 585 246 70 0 chr9 51184877 51185105 -66677522 - L1ME LINE L1 -3698 2382 2139 481 282 103 24 chr9 51185200 51185754 -66676873 - L1ME LINE L1 -4766 1487 892 359 289 162 20 chr9 51185802 51186022 -66676605 - L1ME LINE L1 -5282 788 556 26 64 0 0 chr9 51186952 51186999 -66675628 + AT_rich Low_complexity Low_complexity 1 47 0 1713 235 148 34 chr9 51190357 51191008 -66671619 + MER50 LTR ERV1 10 734 0 500 206 10 0 chr9 51192741 51192838 -66669789 - AluSp/q SINE Alu -15 298 201 306 154 39 0 chr9 51193516 51193594 -66669033 + (TA)n Simple_repeat Simple_repeat 2 82 0 1258 208 70 72 chr9 51193757 51194214 -66668413 + MLT1C LTR MaLR 10 465 -2 23 33 0 0 chr9 51197421 51197451 -66665176 + AT_rich Low_complexity Low_complexity 1 30 0 27 62 0 0 chr9 51198072 51198120 -66664507 + AT_rich Low_complexity Low_complexity 1 48 0 2595 176 14 16 chr9 51199136 51199629 -66662998 + MER72 LTR ERV1 231 722 0 328 314 85 22 chr9 51199929 51200152 -66662475 - MIR SINE MIR -24 238 2 353 294 92 18 chr9 51200291 51200454 -66662173 + MER5A DNA MER1_type 4 178 -11 281 314 0 35 chr9 51201232 51201318 -66661309 - L2 LINE L2 0 3272 3190 392 308 45 26 chr9 51201958 51202114 -66660513 - MIR3 SINE MIR -1 207 49 862 311 103 26 chr9 51202446 51202912 -66659715 - LTR33 LTR ERVL -5 516 15 258 230 151 56 chr9 51203059 51203185 -66659442 - MLT1J LTR MaLR -50 461 324 194 367 39 55 chr9 51204091 51204219 -66658408 - L2 LINE L2 -157 3115 2990 21 82 0 0 chr9 51204297 51204346 -66658281 + AT_rich Low_complexity Low_complexity 1 49 0 2328 89 0 0 chr9 51204505 51204809 -66657818 - AluY SINE Alu -7 304 1 4776 158 8 8 chr9 51204816 51205615 -66657012 - L1PA15 LINE L1 -2 6163 5365 332 407 26 5 chr9 51205941 51206130 -66656497 + L1MEd LINE L1 569 761 -5358 281 243 70 58 chr9 51206203 51206446 -66656181 + L1MEd LINE L1 843 1088 -5031 2157 116 7 0 chr9 51207455 51207749 -66654878 - AluSc SINE Alu -13 296 1 447 240 39 23 chr9 51208668 51208797 -66653830 - L2 LINE L2 -4 3309 3179 2894 246 120 22 chr9 51209039 51209745 -66652882 - L1M4 LINE L1 -1062 5084 4448 2219 77 3 0 chr9 51209745 51210092 -66652535 - AluSp SINE Alu 0 348 1 2894 246 120 22 chr9 51210092 51210571 -66652056 - L1M4 LINE L1 -1698 4448 3782 2196 296 104 32 chr9 51210584 51212281 -66650346 - L1MEc LINE L1 -4545 1851 34 2048 186 23 37 chr9 51265740 51266169 -66596458 - MSTB LTR MaLR -1 425 3 289 264 0 55 chr9 51266236 51266346 -66596281 + L2 LINE L2 3209 3312 -1 1873 283 24 6 chr9 51266360 51266901 -66595726 + MLT1H1 LTR MaLR 5 555 0 22 80 0 0 chr9 51272380 51272430 -66590197 + AT_rich Low_complexity Low_complexity 1 50 0 578 216 0 0 chr9 51272769 51272903 -66589724 - L1PA2 LINE L1 -9 6146 6013 4071 173 26 11 chr9 51274199 51275127 -66587500 + L1MB2 LINE L1 5182 6120 -51 222 288 30 15 chr9 51275242 51275308 -66587319 - MIR SINE MIR -102 160 94 1638 279 88 13 chr9 51275345 51275869 -66586758 - MLT1G LTR MaLR -27 563 1 23 33 0 0 chr9 51276719 51276749 -66585878 + AT_rich Low_complexity Low_complexity 1 30 0 22 56 0 0 chr9 51276797 51276833 -66585794 + AT_rich Low_complexity Low_complexity 1 36 0 30276 40 1 0 chr9 51277484 51281480 -66581147 + L1P LINE L1 705 4830 -1316 667 307 93 69 chr9 51281626 51282193 -66580434 + L3 LINE CR1 243 823 -754 212 262 0 0 chr9 51282284 51282326 -66580301 + L3 LINE CR1 1043 1084 -493 290 248 198 0 chr9 51282813 51282914 -66579713 + L3 LINE CR1 1446 1566 -11 619 265 78 0 chr9 51284660 51284826 -66577801 + MLT2D LTR ERVL 129 307 -107 181 192 0 27 chr9 51284866 51284939 -66577688 + (TA)n Simple_repeat Simple_repeat 1 71 0 315 88 0 35 chr9 51284948 51285005 -66577622 + MLT2B1 LTR ERVL 464 518 -2 21 0 0 0 chr9 51285816 51285837 -66576790 + AT_rich Low_complexity Low_complexity 1 21 0 680 255 16 36 chr9 51286466 51286658 -66575969 + MER5A DNA MER1_type 1 188 -1 11146 107 6 6 chr9 51287197 51288772 -66573855 + THE1B-int LTR MaLR 2 1576 -4 2025 133 52 47 chr9 51288776 51289138 -66573489 + THE1B LTR MaLR 1 364 0 1118 141 11 0 chr9 51289712 51289889 -66572738 - MSTD LTR MaLR 0 396 218 21 0 0 0 chr9 51290513 51290534 -66572093 + AT_rich Low_complexity Low_complexity 1 21 0 406 136 0 0 chr9 51290706 51290772 -66571855 - MSTA LTR MaLR 0 428 363 641 106 11 0 chr9 51290873 51290967 -66571660 + L1MC2 LINE L1 6239 6333 -11 2324 90 0 0 chr9 51291631 51291920 -66570707 + AluSg SINE Alu 1 289 -21 26 0 0 0 chr9 51292446 51292472 -66570155 + AT_rich Low_complexity Low_complexity 1 26 0 357 235 103 51 chr9 51294638 51294872 -66567755 + L1ME LINE L1 1009 1254 -5118 580 289 63 78 chr9 51294910 51295311 -66567316 + L1ME LINE L1 1184 1729 -4814 480 168 42 11 chr9 51295672 51295762 -66566865 - MER90 LTR ERV1 -509 105 12 791 64 9 0 chr9 51295762 51295872 -66566755 + (TC)n Simple_repeat Simple_repeat 2 112 0 274 269 85 61 chr9 51295893 51296105 -66566522 + MLT1J LTR MaLR 220 436 -75 2437 97 0 0 chr9 51296455 51296765 -66565862 + AluSg SINE Alu 1 310 0 690 266 143 67 chr9 51296826 51297274 -66565353 + MLT1K LTR MaLR 102 583 -5 183 139 0 0 chr9 51298040 51298076 -66564551 + (TCC)n Simple_repeat Simple_repeat 2 37 0 198 0 0 0 chr9 51298227 51298249 -66564378 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 186 43 0 0 chr9 51299312 51299335 -66563292 + (CGG)n Simple_repeat Simple_repeat 2 24 0 1792 146 164 14 chr9 51300066 51300437 -66562190 + MSTA LTR MaLR 1 427 -1 189 329 14 0 chr9 51301414 51301484 -66561143 - MIR SINE MIR -131 131 61 427 203 0 0 chr9 51301943 51302017 -66560610 + Charlie8 DNA MER1_type 2344 2417 0 187 231 0 0 chr9 51302032 51302071 -66560556 + MIR3 SINE MIR 168 206 -2 26 0 0 0 chr9 51302398 51302424 -66560203 + AT_rich Low_complexity Low_complexity 1 26 0 251 270 16 0 chr9 51302888 51302951 -66559676 + MIR SINE MIR 191 254 -8 966 178 24 19 chr9 51303451 51303664 -66558963 + L1PA16 LINE L1 5939 6152 -14 272 217 72 14 chr9 51304439 51304508 -66558119 - MLT1J2 LTR MaLR -34 416 344 373 228 59 22 chr9 51304585 51304725 -66557902 - MLT1J2 LTR MaLR -286 225 65 1357 216 6 38 chr9 51305760 51306075 -66556552 + AluJb SINE Alu 1 305 -7 23 33 0 0 chr9 51307210 51307240 -66555387 + AT_rich Low_complexity Low_complexity 1 30 0 32 57 0 0 chr9 51307769 51307822 -66554805 + AT_rich Low_complexity Low_complexity 1 53 0 619 337 42 7 chr9 51310152 51310543 -66552084 - MER119 DNA MER1_type 0 583 2 23 33 0 0 chr9 51310990 51311020 -66551607 + AT_rich Low_complexity Low_complexity 1 30 0 4283 165 8 3 chr9 51312731 51313447 -66549180 + MER72 LTR ERV1 3 722 0 341 314 85 22 chr9 51313748 51313971 -66548656 - MIR SINE MIR -24 238 2 349 294 92 18 chr9 51314110 51314273 -66548354 + MER5A DNA MER1_type 4 178 -11 275 314 0 35 chr9 51315052 51315138 -66547489 - L2 LINE L2 0 3272 3190 738 327 88 33 chr9 51317072 51317608 -66545019 - L2 LINE L2 -2 3311 2736 22 0 0 0 chr9 51317831 51317853 -66544774 + AT_rich Low_complexity Low_complexity 1 22 0 248 322 40 7 chr9 51318550 51318699 -66543928 + Charlie2 DNA MER1_type 146 299 -2563 399 219 17 42 chr9 51318886 51319005 -66543622 + MER57-int LTR ERV1 5647 5762 -1775 354 147 44 0 chr9 51319123 51319191 -66543436 + L1MA8 LINE L1 6100 6170 -121 2087 147 0 31 chr9 51319191 51319544 -66543083 - Tigger7 DNA MER2_type 0 2487 2146 925 206 220 5 chr9 51319546 51319769 -66542858 + Tigger7 DNA MER2_type 77 347 -2140 390 267 0 0 chr9 51319770 51319845 -66542782 - Tigger7 DNA MER2_type -657 76 2 511 188 43 0 chr9 51319846 51319963 -66542664 + L1MA8 LINE L1 6169 6290 -1 989 283 48 76 chr9 51320003 51320833 -66541794 + MER57-int LTR ERV1 2251 4091 -780 825 210 103 57 chr9 51321146 51321427 -66541200 + MER57-int LTR ERV1 6867 7160 -377 555 253 145 25 chr9 51321431 51321796 -66540831 + MER57A LTR ERV1 19 403 0 1583 38 42 9 chr9 51321842 51322054 -66540573 - L1P2 LINE L1 -338 5817 5599 1111 75 7 0 chr9 51322054 51322200 -66540427 + L1PA5 LINE L1 6002 6149 -5 405 236 32 0 chr9 51322207 51322330 -66540297 + L1ME3A LINE L1 5721 5847 -323 2499 129 3 13 chr9 51324012 51324391 -66538236 + THE1C LTR MaLR 1 375 0 205 205 13 26 chr9 51324909 51324987 -66537640 + (CATATA)n Simple_repeat Simple_repeat 1 77 0 303 93 0 0 chr9 51325998 51326041 -66536586 + (TG)n Simple_repeat Simple_repeat 2 44 0 197 117 11 64 chr9 51326041 51326135 -66536492 + (TA)n Simple_repeat Simple_repeat 2 90 0 419 305 49 12 chr9 51327162 51327326 -66535301 + MIR SINE MIR 60 229 -33 230 304 22 11 chr9 51329421 51329513 -66533114 - MLT1L LTR MaLR -171 444 352 268 276 190 17 chr9 51330805 51330921 -66531706 - MIR SINE MIR -69 193 58 222 265 15 15 chr9 51331496 51331564 -66531063 + (CA)n Simple_repeat Simple_repeat 2 69 0 285 310 78 42 chr9 51332549 51333000 -66529627 - L1MEd LINE L1 -5084 1035 569 4825 153 8 9 chr9 51333326 51334126 -66528501 + L1PA15 LINE L1 5365 6163 -2 2394 86 0 0 chr9 51334133 51334437 -66528190 + AluY SINE Alu 1 304 -7 21 82 0 0 chr9 51334596 51334645 -66527982 + AT_rich Low_complexity Low_complexity 1 49 0 22 35 0 0 chr9 51335992 51336021 -66526606 + AT_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chr9 51336140 51336177 -66526450 + AT_rich Low_complexity Low_complexity 1 37 0 900 271 5 1 chr9 51336234 51336457 -66526170 - MIR SINE MIR -15 247 20 210 325 67 17 chr9 51336930 51337050 -66525577 + MIR3 SINE MIR 79 204 -4 281 338 29 14 chr9 51338801 51338940 -66523687 + MIR SINE MIR 66 206 -56 22 35 0 0 chr9 51338953 51338982 -66523645 + AT_rich Low_complexity Low_complexity 1 29 0 27 0 0 0 chr9 51341466 51341493 -66521134 + AT_rich Low_complexity Low_complexity 1 27 0 180 0 0 0 chr9 51342395 51342415 -66520212 + (T)n Simple_repeat Simple_repeat 1 20 0 221 271 34 0 chr9 51344208 51344267 -66518360 + MER5B DNA MER1_type 118 178 0 260 247 171 116 chr9 51344516 51344662 -66517965 + MER5A DNA MER1_type 35 188 -1 640 272 14 28 chr9 51345688 51345901 -66516726 - L2 LINE L2 -2 3311 3102 226 200 0 0 chr9 51346009 51346049 -66516578 - MIR3 SINE MIR -45 163 124 342 289 211 22 chr9 51347086 51347266 -66515361 - MIR SINE MIR -5 257 44 339 184 53 0 chr9 51347786 51347862 -66514765 + MIR SINE MIR 109 188 -74 32 57 0 0 chr9 51347866 51347919 -66514708 + AT_rich Low_complexity Low_complexity 1 53 0 296 224 0 0 chr9 51347952 51348010 -66514617 + MIR SINE MIR 204 261 -1 691 73 0 10 chr9 51348122 51348218 -66514409 + L1PB1 LINE L1 6053 6147 -4 1611 60 0 0 chr9 51349036 51349237 -66513390 - L1PA5 LINE L1 -12 6142 5942 334 230 34 0 chr9 51350947 51351095 -66511532 + (TA)n Simple_repeat Simple_repeat 1 153 0 235 261 0 22 chr9 51351096 51351188 -66511439 - L1MC4 LINE L1 -1341 6701 6612 764 249 78 20 chr9 51351204 51351449 -66511178 + MER102a DNA MER1_type 72 330 0 275 49 24 0 chr9 51353449 51353490 -66509137 + (TG)n Simple_repeat Simple_repeat 2 43 0 212 230 0 27 chr9 51354589 51354663 -66507964 + GA-rich Low_complexity Low_complexity 2 73 0 186 43 0 0 chr9 51355145 51355168 -66507459 + (GA)n Simple_repeat Simple_repeat 2 24 0 412 293 17 16 chr9 51355269 51355436 -66507191 - MIR SINE MIR -56 206 45 3329 148 47 2 chr9 51356033 51356609 -66506018 + MER7C DNA MER2_type 1 602 0 338 318 33 40 chr9 51357091 51357242 -66505385 + MIR SINE MIR 15 164 -98 606 294 13 29 chr9 51357793 51358031 -66504596 - L2 LINE L2 0 3313 3080 506 319 12 0 chr9 51358721 51358881 -66503746 + MIR SINE MIR 67 228 -34 986 256 54 63 chr9 51358949 51359374 -66503253 - L1MC4 LINE L1 -1871 5937 5517 2323 107 3 0 chr9 51359404 51359712 -66502915 + AluSx SINE Alu 1 309 -3 25 65 0 0 chr9 51359794 51359840 -66502787 + AT_rich Low_complexity Low_complexity 1 46 0 1087 263 100 50 chr9 51360324 51361042 -66501585 + L1MEd LINE L1 462 1215 -4904 537 347 17 6 chr9 51361243 51361466 -66501161 + MIR SINE MIR 33 257 -5 246 158 18 88 chr9 51361859 51361916 -66500711 - L2 LINE L2 -5 3308 3256 242 250 94 62 chr9 51363127 51363255 -66499372 - 7SK RNA RNA -61 132 1 229 392 23 8 chr9 51363265 51363395 -66499232 + MIR SINE MIR 23 154 -108 303 298 92 50 chr9 51364741 51364979 -66497648 - L2 LINE L2 -1150 2164 1917 252 314 143 0 chr9 51365142 51365247 -66497380 - MER5A DNA MER1_type -69 120 1 1657 104 0 5 chr9 51365289 51365510 -66497117 + AluSg/x SINE Alu 72 291 -19 1389 282 81 36 chr9 51365916 51366611 -66496016 - L2 LINE L2 -231 3082 2356 247 303 105 30 chr9 51367195 51367568 -66495059 - L1ME LINE L1 -206 5915 5515 322 93 0 0 chr9 51367570 51367613 -66495014 + Alu SINE Alu 2 44 -256 46 0 0 0 chr9 51369430 51369476 -66493151 + AT_rich Low_complexity Low_complexity 1 46 0 2330 195 28 30 chr9 51370342 51370885 -66491742 - L1MD3 LINE L1 -11 7984 7443 1868 243 33 30 chr9 51371529 51371946 -66490681 - L1MC4 LINE L1 0 8042 7621 2268 110 7 0 chr9 51371946 51372245 -66490382 - AluSg SINE Alu -9 301 1 1868 243 33 30 chr9 51372245 51372403 -66490224 - L1MC4 LINE L1 -421 7621 7465 350 194 155 10 chr9 51372414 51372517 -66490110 - LTR33 LTR ERVL -54 467 350 359 326 28 14 chr9 51372631 51372772 -66489855 - LTR33 LTR ERVL -373 148 6 180 348 34 34 chr9 51372880 51372969 -66489658 + MIR SINE MIR 36 124 -138 2096 140 3 0 chr9 51375276 51375584 -66487043 + AluSx SINE Alu 1 309 -3 2061 120 7 3 chr9 51375794 51376086 -66486541 - AluSx SINE Alu -17 295 3 2443 84 0 0 chr9 51377181 51377489 -66485138 + AluSg SINE Alu 1 308 -2 22 88 0 0 chr9 51378427 51378484 -66484143 + AT_rich Low_complexity Low_complexity 1 57 0 24 0 0 0 chr9 51379647 51379671 -66482956 + AT_rich Low_complexity Low_complexity 1 24 0 42 0 0 0 chr9 51379717 51379759 -66482868 + AT_rich Low_complexity Low_complexity 1 42 0 189 0 0 0 chr9 51382226 51382247 -66480380 + (A)n Simple_repeat Simple_repeat 1 21 0 208 259 120 56 chr9 51383906 51384014 -66478613 - MIR3 SINE MIR -34 228 114 207 171 0 24 chr9 51384607 51384648 -66477979 + MIR SINE MIR 173 212 -50 419 320 197 5 chr9 51385550 51385753 -66476874 - MIR SINE MIR 0 262 21 348 313 88 0 chr9 51386438 51386585 -66476042 + MIR SINE MIR 62 221 -41 445 230 24 35 chr9 51386778 51386922 -66475705 - MIR SINE MIR -55 153 1 399 141 0 24 chr9 51387233 51387318 -66475309 + L1PA15 LINE L1 6082 6164 -1 1571 166 86 6 chr9 51388628 51388942 -66473685 + MER44D DNA MER2_type 1 609 0 191 288 0 41 chr9 51389586 51389659 -66472968 + MIR SINE MIR 88 157 -105 672 266 112 62 chr9 51391296 51391619 -66471008 + MER102b DNA MER1_type 1 339 -2 801 226 97 40 chr9 51393074 51393322 -66469305 + MIR SINE MIR 1 262 0 2426 46 0 0 chr9 51394591 51394900 -66467727 - AluY SINE Alu 0 309 1 1913 170 0 0 chr9 51395022 51395328 -66467299 + AluJb SINE Alu 1 306 -6 342 0 0 0 chr9 51395407 51395445 -66467182 + (TG)n Simple_repeat Simple_repeat 2 39 0 508 234 209 96 chr9 51396250 51396738 -66465889 - MLT1H LTR MaLR -4 545 3 297 250 130 20 chr9 51397019 51397119 -66465508 + MIR3 SINE MIR 95 205 -3 318 232 289 26 chr9 51398232 51398422 -66464205 + MIR SINE MIR 17 256 -6 815 258 106 10 chr9 51398725 51398923 -66463704 + MIR SINE MIR 12 228 -34 226 231 92 0 chr9 51398923 51398988 -66463639 + LTR3b LTR ERVK 422 492 -8 301 293 12 0 chr9 51399047 51399129 -66463498 + L2 LINE L2 3188 3270 -2 396 326 192 0 chr9 51399218 51399411 -66463216 + MIR SINE MIR 12 241 -21 1870 133 3 18 chr9 51399576 51399901 -66462726 - AluY SINE Alu 0 321 1 206 238 0 0 chr9 51400702 51400744 -66461883 + (TG)n Simple_repeat Simple_repeat 2 43 0 285 51 0 0 chr9 51400744 51400783 -66461844 + (GA)n Simple_repeat Simple_repeat 1 39 0 304 224 0 0 chr9 51401063 51401121 -66461506 + MER5A DNA MER1_type 52 109 -80 213 108 0 0 chr9 51401717 51401754 -66460873 + (TC)n Simple_repeat Simple_repeat 1 37 0 * 252 200 0 0 chr9 51401753 51401808 -66460819 + (CA)n Simple_repeat Simple_repeat 1 55 0 2215 108 3 3 chr9 51402102 51402407 -66460220 + AluSq SINE Alu 1 305 -8 22 35 0 0 chr9 51402893 51402922 -66459705 + AT_rich Low_complexity Low_complexity 1 29 0 249 241 37 0 chr9 51403695 51403749 -66458878 + polypurine Low_complexity Low_complexity 2 57 0 1086 168 10 30 chr9 51405675 51405872 -66456755 - MER3 DNA MER1_type -16 193 1 586 201 37 30 chr9 51405966 51406100 -66456527 - MER5A DNA MER1_type -54 135 1 540 229 137 6 chr9 51406287 51406462 -66456165 + Charlie5 DNA MER1_type 3 200 -2412 1016 152 47 39 chr9 51406504 51406594 -66456033 + Charlie5 DNA MER1_type 2328 2416 -169 2397 71 3 0 chr9 51406594 51406889 -66455738 + AluSp SINE Alu 1 296 -17 1016 152 47 39 chr9 51406889 51407054 -66455573 + Charlie5 DNA MER1_type 2416 2585 0 269 163 20 0 chr9 51407136 51407185 -66455442 + L3 LINE CR1 1524 1573 -4 27 0 0 0 chr9 51407395 51407422 -66455205 + AT_rich Low_complexity Low_complexity 1 27 0 538 178 164 67 chr9 51407422 51407647 -66454980 - L1MA7 LINE L1 -11 6280 6034 2037 178 81 14 chr9 51407649 51408071 -66454556 - MSTB2 LTR MaLR -7 450 1 283 232 0 0 chr9 51408073 51408129 -66454498 - L1MA7 LINE L1 -256 6035 5980 244 226 71 24 chr9 51408606 51408690 -66453937 - MIR SINE MIR -138 124 37 317 240 230 34 chr9 51410022 51410226 -66452401 + L1ME LINE L1 5585 5828 -293 43 71 0 0 chr9 51410237 51410322 -66452305 + AT_rich Low_complexity Low_complexity 1 85 0 245 336 100 0 chr9 51412296 51412406 -66450221 - MIR SINE MIR -118 144 24 488 256 5 94 chr9 51414737 51414940 -66447687 - MER5A DNA MER1_type -2 187 3 515 245 18 37 chr9 51414957 51415120 -66447507 + MIR SINE MIR 103 262 0 269 246 0 9 chr9 51416482 51416596 -66446031 + (TA)n Simple_repeat Simple_repeat 2 114 0 232 330 110 17 chr9 51416642 51416815 -66445812 + L3 LINE CR1 259 447 -1130 2513 27 10 0 chr9 51417201 51417497 -66445130 + AluY SINE Alu 1 299 -12 554 297 80 9 chr9 51418028 51418229 -66444398 - MIR SINE MIR -10 252 40 638 303 35 43 chr9 51418483 51418714 -66443913 - MIR SINE MIR -2 260 32 869 187 111 5 chr9 51418715 51418913 -66443714 + MER20 DNA MER1_type 1 219 0 468 281 6 48 chr9 51419087 51419254 -66443373 - MER5B DNA MER1_type -15 163 4 255 244 12 47 chr9 51419362 51419448 -66443179 - MIR SINE MIR -15 247 165 429 156 0 13 chr9 51419475 51419552 -66443075 - MLT1A1 LTR MaLR -289 76 1 352 223 73 17 chr9 51419552 51419658 -66442969 - MIR SINE MIR -65 143 38 923 206 5 26 chr9 51419678 51419867 -66442760 - MER5A DNA MER1_type 0 189 5 2083 112 7 7 chr9 51420557 51420866 -66441761 - AluSq SINE Alu 0 309 1 299 313 147 0 chr9 51422069 51422219 -66440408 - MIR SINE MIR -1 261 90 232 259 152 9 chr9 51422289 51422401 -66440226 - MER5A DNA MER1_type -24 165 38 501 244 77 48 chr9 51422414 51422582 -66440045 + MER5B DNA MER1_type 5 177 -1 2219 131 25 0 chr9 51422746 51423104 -66439523 - L1PA16 LINE L1 -263 5903 5537 564 203 45 74 chr9 51423324 51423526 -66439101 + L1MA9 LINE L1 6094 6289 -2 234 62 0 0 chr9 51425745 51425777 -66436850 + (CA)n Simple_repeat Simple_repeat 1 32 0 243 125 0 0 chr9 51427035 51427075 -66435552 + (CA)n Simple_repeat Simple_repeat 1 40 0 210 71 0 0 chr9 51427656 51427684 -66434943 + (TG)n Simple_repeat Simple_repeat 2 29 0 345 123 55 27 chr9 51427855 51427928 -66434699 + MER116 DNA Mariner 4 78 -2 2238 81 10 7 chr9 51428370 51428665 -66433962 - AluSx SINE Alu -16 296 1 402 282 188 7 chr9 51428991 51429140 -66433487 - MER5B DNA MER1_type -1 177 2 1151 199 95 0 chr9 51429435 51429731 -66432896 + MER33 DNA MER1_type 1 324 0 489 220 0 10 chr9 51429788 51429888 -66432739 - Tigger7 DNA MER2_type -2 2485 2387 * 1938 176 107 8 chr9 51429880 51430272 -66432355 - Tigger7 DNA MER2_type -2055 432 2 800 329 59 18 chr9 51430495 51430933 -66431694 + L3 LINE CR1 1049 1504 -73 877 265 23 39 chr9 51430955 51431215 -66431412 + MIR SINE MIR 5 260 -2 341 300 27 18 chr9 51431313 51431423 -66431204 - L2 LINE L2 0 3313 3203 180 0 0 0 chr9 51431452 51431472 -66431155 + (TAA)n Simple_repeat Simple_repeat 2 21 0 335 314 154 18 chr9 51431566 51431786 -66430841 - L2 LINE L2 -340 2974 2725 276 380 18 9 chr9 51432018 51432131 -66430496 - MIR SINE MIR -63 145 32 573 291 17 57 chr9 51432536 51432578 -66430049 - MIR3 SINE MIR -14 194 152 627 207 44 113 chr9 51432578 51432781 -66429846 + MER5A DNA MER1_type 1 189 0 573 291 17 57 chr9 51432781 51432913 -66429714 - MIR3 SINE MIR -56 152 27 189 361 120 8 chr9 51435446 51435579 -66427048 - MIR3 SINE MIR -24 184 37 268 278 62 41 chr9 51435742 51435839 -66426788 + MLT1L LTR MaLR 102 200 -415 386 241 176 30 chr9 51435984 51436183 -66426444 + MLT1K LTR MaLR 335 562 -26 435 240 84 0 chr9 51437367 51437546 -66425081 + Charlie2 DNA MER1_type 2552 2745 -117 765 222 11 42 chr9 51437964 51438153 -66424474 - MER58A DNA MER1_type -6 218 36 305 283 179 0 chr9 51438167 51438273 -66424354 + L2 LINE L2 3148 3272 0 44 0 0 0 chr9 51438325 51438369 -66424258 + AT_rich Low_complexity Low_complexity 1 44 0 945 216 35 30 chr9 51438828 51439060 -66423567 - MIR SINE MIR -6 256 24 338 342 152 6 chr9 51439728 51439886 -66422741 + MIR SINE MIR 15 195 -67 269 281 182 0 chr9 51439997 51440118 -66422509 - MIR SINE MIR -30 232 90 232 259 152 9 chr9 51440188 51440300 -66422327 - MER5A DNA MER1_type -24 165 38 501 244 77 48 chr9 51440313 51440481 -66422146 + MER5B DNA MER1_type 5 177 -1 2219 131 25 0 chr9 51440645 51441003 -66421624 - L1PA16 LINE L1 -263 5903 5537 564 203 45 74 chr9 51441223 51441425 -66421202 + L1MA9 LINE L1 6094 6289 -2 234 62 0 0 chr9 51443644 51443676 -66418951 + (CA)n Simple_repeat Simple_repeat 1 32 0 243 125 0 0 chr9 51444935 51444975 -66417652 + (CA)n Simple_repeat Simple_repeat 1 40 0 210 71 0 0 chr9 51445556 51445584 -66417043 + (TG)n Simple_repeat Simple_repeat 2 29 0 345 123 55 27 chr9 51445755 51445828 -66416799 + MER116 DNA Mariner 4 78 -2 2208 94 0 0 chr9 51446270 51446547 -66416080 - AluSg SINE Alu -15 295 19 8726 45 0 5 chr9 51446552 51447671 -66414956 - L1P LINE L1 -2190 3956 2843 4209 189 114 5 chr9 51447773 51448827 -66413800 - L1MC2 LINE L1 0 6344 5184 393 242 150 13 chr9 51449285 51449336 -66413291 - MER5A DNA MER1_type -7 182 139 2465 82 0 3 chr9 51449336 51449641 -66412986 - AluSc SINE Alu -5 304 1 393 242 150 13 chr9 51449641 51449742 -66412885 - MER5A DNA MER1_type -50 139 9 399 271 7 12 chr9 51450446 51450577 -66412050 - MER5A DNA MER1_type -52 126 9 1673 196 11 0 chr9 51452148 51452433 -66410194 + AluJo SINE Alu 1 288 -24 21 36 0 0 chr9 51453197 51453225 -66409402 + AT_rich Low_complexity Low_complexity 1 28 0 2266 99 0 0 chr9 51453698 51453992 -66408635 + AluSc SINE Alu 1 294 -15 181 291 47 63 chr9 51456288 51456415 -66406212 + L2 LINE L2 2920 3044 -228 249 33 0 0 chr9 51457642 51457672 -66404955 + (GAAAA)n Simple_repeat Simple_repeat 1 30 0 213 305 10 115 chr9 51457673 51457873 -66404754 - MIR3 SINE MIR -6 202 24 642 236 108 0 chr9 51459913 51460125 -66402502 - MER96B DNA MER1_type? -182 235 1 195 277 108 0 chr9 51460150 51460233 -66402394 - L3 LINE CR1 -4 1573 1482 857 176 47 35 chr9 51460739 51460909 -66401718 + FAM SINE Alu 2 173 -2 243 88 0 0 chr9 51461215 51461249 -66401378 + (TGAA)n Simple_repeat Simple_repeat 2 35 0 494 206 10 0 chr9 51461856 51461953 -66400674 + MER81 DNA DNA 2 99 -15 203 234 208 0 chr9 51462401 51462478 -66400149 + L2 LINE L2 3175 3267 -5 213 94 0 0 chr9 51464327 51464359 -66398268 + (TG)n Simple_repeat Simple_repeat 1 32 0 762 179 32 0 chr9 51464612 51464768 -66397859 - MER3 DNA MER1_type -87 122 9 235 287 173 55 chr9 51466102 51466339 -66396288 - MLT1H LTR MaLR -154 395 131 1868 111 9 73 chr9 51467247 51467438 -66395189 - AluSg SINE Alu -14 296 131 225 0 0 0 chr9 51467438 51467463 -66395164 + (TG)n Simple_repeat Simple_repeat 2 26 0 1868 111 9 73 chr9 51467463 51467587 -66395040 - AluSg SINE Alu -179 131 1 414 322 132 4 chr9 51467634 51467876 -66394751 - MLT1J LTR MaLR -217 294 22 1906 140 0 47 chr9 51468623 51468944 -66393683 + AluJo SINE Alu 1 306 -6 192 163 0 0 chr9 51469473 51469516 -66393111 + (CAG)n Simple_repeat Simple_repeat 3 45 0 228 305 24 0 chr9 51470269 51470351 -66392276 + MIR3 SINE MIR 120 203 -5 700 293 80 4 chr9 51470810 51471035 -66391592 + MIR SINE MIR 21 262 0 555 325 12 4 chr9 51471386 51471584 -66391043 - MIR SINE MIR -66 196 2 332 262 48 29 chr9 51471894 51471997 -66390630 + MIR3 SINE MIR 82 186 -22 614 277 151 0 chr9 51472381 51472587 -66390040 + MIR SINE MIR 4 240 -22 223 332 228 14 chr9 51472653 51472864 -66389763 - MIR SINE MIR -4 258 3 253 288 63 37 chr9 51473546 51473699 -66388928 - MIR SINE MIR -57 151 53 324 339 66 8 chr9 51475297 51475418 -66387209 + MIR3 SINE MIR 44 171 -37 1862 131 53 3 chr9 51475971 51476253 -66386374 - AluSx SINE Alu -15 297 2 23 33 0 0 chr9 51477571 51477601 -66385026 + AT_rich Low_complexity Low_complexity 1 30 0 2303 114 0 0 chr9 51478256 51478562 -66384065 + AluSx SINE Alu 1 306 -6 186 190 60 155 chr9 51478590 51478706 -66383921 - MIR3 SINE MIR -19 189 85 1765 129 65 4 chr9 51479145 51479423 -66383204 + AluSx SINE Alu 1 295 -17 28 0 0 0 chr9 51479569 51479597 -66383030 + AT_rich Low_complexity Low_complexity 1 28 0 351 0 0 0 chr9 51481337 51481376 -66381251 + (GA)n Simple_repeat Simple_repeat 1 39 0 22 35 0 0 chr9 51481596 51481625 -66381002 + AT_rich Low_complexity Low_complexity 1 29 0 2161 140 0 0 chr9 51483457 51483764 -66378863 + AluSx SINE Alu 1 307 -5 1949 114 39 0 chr9 51484056 51484215 -66378412 - AluSc SINE Alu -18 291 115 248 0 0 30 chr9 51484215 51484248 -66378379 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 1949 114 39 0 chr9 51484248 51484368 -66378259 - AluSc SINE Alu -194 115 1 268 329 85 49 chr9 51484493 51484657 -66377970 + L2 LINE L2 2927 3096 -176 2137 127 0 3 chr9 51484730 51485038 -66377589 + AluSx SINE Alu 5 311 -1 185 238 0 0 chr9 51486128 51486170 -66376457 - MIR SINE MIR -8 254 213 1326 95 80 30 chr9 51486486 51486728 -66375899 - AluSg/x SINE Alu 0 325 74 24 91 0 0 chr9 51486884 51486950 -66375677 + AT_rich Low_complexity Low_complexity 1 66 0 21 57 0 0 chr9 51487177 51487212 -66375415 + AT_rich Low_complexity Low_complexity 1 35 0 807 211 39 14 chr9 51487794 51488002 -66374625 - MER20 DNA MER1_type -4 215 3 379 341 38 8 chr9 51489804 51489936 -66372691 - MIR SINE MIR -81 181 46 1557 249 98 64 chr9 51490031 51490580 -66372047 - MLT1G1 LTR MaLR -27 568 1 325 219 123 0 chr9 51490580 51490653 -66371974 + MIR3 SINE MIR 78 159 -49 215 359 26 32 chr9 51490678 51490834 -66371793 + MER5A DNA MER1_type 35 189 0 321 344 32 13 chr9 51490891 51491045 -66371582 + MIR SINE MIR 94 250 -12 425 218 0 0 chr9 51491412 51491490 -66371137 - L2 LINE L2 -4 3309 3232 480 103 26 0 chr9 51491698 51491776 -66370851 + MADE1 DNA Mariner 1 80 0 210 156 0 0 chr9 51491810 51491855 -66370772 + (TG)n Simple_repeat Simple_repeat 2 46 0 230 0 33 0 chr9 51491922 51491952 -66370675 + (TTTTTA)n Simple_repeat Simple_repeat 2 32 0 1838 155 6 46 chr9 51492333 51492480 -66370147 + AluJb SINE Alu 1 152 -160 2136 131 0 0 chr9 51492480 51492785 -66369842 + AluSx SINE Alu 3 307 -5 1838 155 6 46 chr9 51492785 51492960 -66369667 + AluJb SINE Alu 152 310 -2 2500 147 7 27 chr9 51494893 51495336 -66367291 - Tigger2a DNA MER2_type 0 434 1 555 274 45 0 chr9 51495427 51495571 -66367056 + MIR3 SINE MIR 34 190 -18 2307 110 0 0 chr9 51495670 51495970 -66366657 + AluSq SINE Alu 1 300 -13 212 75 57 19 chr9 51495989 51496042 -66366585 + (TAA)n Simple_repeat Simple_repeat 3 57 0 391 269 6 6 chr9 51497544 51497719 -66364908 + GA-rich Low_complexity Low_complexity 2 176 0 741 349 90 3 chr9 51498568 51498958 -66363669 + L3 LINE CR1 1137 1560 -17 218 329 0 0 chr9 51499906 51499976 -66362651 + MIR SINE MIR 123 192 -70 190 306 93 74 chr9 51500420 51500528 -66362099 + MIR SINE MIR 44 153 -55 405 265 86 19 chr9 51501317 51501479 -66361148 + MIR SINE MIR 69 241 -21 218 116 23 0 chr9 51501784 51501827 -66360800 + (TA)n Simple_repeat Simple_repeat 2 45 0 343 209 0 0 chr9 51501866 51501933 -66360694 + MIR3 SINE MIR 111 177 -31 832 183 18 14 chr9 51503838 51504057 -66358570 + Charlie5 DNA MER1_type 2366 2585 -27 519 241 199 5 chr9 51504536 51504727 -66357900 - MIR SINE MIR -17 245 18 2093 133 13 0 chr9 51505227 51505535 -66357092 + AluSx SINE Alu 1 312 0 426 211 21 0 chr9 51505757 51505852 -66356775 - L1ME3A LINE L1 -6 6164 6068 1923 121 0 25 chr9 51506309 51506591 -66356036 + AluSc SINE Alu 21 295 -14 21 36 0 0 chr9 51506647 51506675 -66355952 + AT_rich Low_complexity Low_complexity 1 28 0 700 228 15 148 chr9 51508598 51508741 -66353886 - MIR SINE MIR -28 234 140 1493 28 0 0 chr9 51508741 51508918 -66353709 + L1PA4 LINE L1 5977 6153 -2 700 228 15 148 chr9 51508918 51509037 -66353590 - MIR SINE MIR -122 140 7 728 202 0 0 chr9 51509240 51509364 -66353263 - FLAM_A SINE Alu -9 124 1 479 271 19 32 chr9 51509420 51509575 -66353052 + MER5A DNA MER1_type 1 153 -36 394 305 205 33 chr9 51509864 51510392 -66352235 + L2 LINE L2 2671 3290 -23 511 303 108 5 chr9 51511460 51511655 -66350972 - MIR SINE MIR -41 221 7 204 97 0 0 chr9 51513771 51513802 -66348825 + (CA)n Simple_repeat Simple_repeat 2 32 0 2094 104 3 20 chr9 51515579 51515877 -66346750 - AluSx SINE Alu -19 293 1 246 231 106 19 chr9 51516790 51516894 -66345733 - MER102b DNA MER1_type 0 341 229 22 70 0 0 chr9 51517999 51518042 -66344585 + AT_rich Low_complexity Low_complexity 1 43 0 313 265 28 44 chr9 51521888 51522097 -66340530 - MLT1J2 LTR MaLR -207 243 16 333 321 80 9 chr9 51522169 51522281 -66340346 - L2 LINE L2 -3 3269 3150 28 0 0 0 chr9 51522307 51522335 -66340292 + AT_rich Low_complexity Low_complexity 1 28 0 226 342 14 68 chr9 51522428 51522613 -66340014 - L3 LINE CR1 -139 1438 1271 1405 51 0 0 chr9 51522613 51522789 -66339838 + L1PA6 LINE L1 5974 6149 -5 226 342 14 68 chr9 51522789 51522881 -66339746 - L3 LINE CR1 -306 1271 1176 2500 201 17 6 chr9 51523036 51523558 -66339069 - MER74A LTR ERVL 0 558 31 332 407 71 0 chr9 51525382 51525522 -66337105 - L2 LINE L2 -1 3271 3122 1479 123 20 0 chr9 51525590 51525794 -66336833 + AluSg/x SINE Alu 84 291 -21 815 55 9 0 chr9 51525803 51525912 -66336715 + (GAA)n Simple_repeat Simple_repeat 3 112 0 483 289 13 7 chr9 51526117 51526269 -66336358 + Charlie8 DNA MER1_type 98 250 -2167 24 0 0 0 chr9 51527090 51527114 -66335513 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr9 51529028 51529063 -66333564 + AT_rich Low_complexity Low_complexity 1 35 0 1611 244 58 5 chr9 51529078 51529505 -66333122 + L1M4 LINE L1 16 465 -7100 3219 158 21 74 chr9 51529508 51530611 -66332016 + L1PB1 LINE L1 3696 4856 -1295 803 127 135 0 chr9 51530611 51530737 -66331890 - AluSg/x SINE Alu -28 284 142 3219 158 21 74 chr9 51530737 51530751 -66331876 + L1PB1 LINE L1 4856 4869 -1282 3219 106 15 0 chr9 51530751 51530861 -66331766 + L1PB1 LINE L1 5672 5779 -372 413 36 0 18 chr9 51530861 51530917 -66331710 + (TA)n Simple_repeat Simple_repeat 2 56 0 3219 106 15 0 chr9 51530917 51531279 -66331348 + L1PB1 LINE L1 5779 6151 0 3219 158 21 74 chr9 51531279 51532097 -66330530 + L1PB1 LINE L1 4869 6022 -129 1949 130 7 13 chr9 51532097 51532396 -66330231 + AluSx SINE Alu 1 297 -15 3219 158 21 74 chr9 51532396 51532520 -66330107 + L1PB1 LINE L1 6022 6151 0 3296 141 34 34 chr9 51532520 51532542 -66330085 + L1MA4 LINE L1 5647 5668 -632 2075 141 0 16 chr9 51532542 51532855 -66329772 + AluSx SINE Alu 1 308 -4 3296 141 34 34 chr9 51532855 51533471 -66329156 + L1MA4 LINE L1 5667 6299 -1 1825 159 0 52 chr9 51533712 51534021 -66328606 - AluJb SINE Alu -16 296 4 27 29 0 0 chr9 51534159 51534193 -66328434 + AT_rich Low_complexity Low_complexity 1 34 0 401 241 116 68 chr9 51534289 51534600 -66328027 + L1M4 LINE L1 4095 4420 -3145 307 242 153 16 chr9 51534661 51534785 -66327842 + L1M4 LINE L1 4505 4645 -2920 25 0 0 0 chr9 51534930 51534955 -66327672 + AT_rich Low_complexity Low_complexity 1 25 0 310 323 181 19 chr9 51535257 51535523 -66327104 + HAL1 LINE L1 1081 1389 -1118 239 170 38 0 chr9 51535572 51535625 -66327002 + L2 LINE L2 2493 2547 -767 966 115 8 0 chr9 51535626 51535756 -66326871 + AluSg/x SINE Alu 158 288 -24 23 33 0 0 chr9 51535851 51535881 -66326746 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr9 51536158 51536183 -66326444 + AT_rich Low_complexity Low_complexity 1 25 0 743 250 63 28 chr9 51536380 51536632 -66325995 + MIR SINE MIR 2 262 0 399 274 75 88 chr9 51536637 51536944 -66325683 - HAL1b LINE L1 -681 667 365 2047 126 0 3 chr9 51538594 51538909 -66323718 - AluSx SINE Alu 0 314 1 234 392 83 0 chr9 51540012 51540132 -66322495 + L2 LINE L2 3143 3272 0 2176 128 0 13 chr9 51540930 51541235 -66321392 + AluSx SINE Alu 1 301 -11 1062 280 66 10 chr9 51541911 51542304 -66320323 + MLT1J1 LTR MaLR 3 417 -29 25 90 0 0 chr9 51542437 51542504 -66320123 + AT_rich Low_complexity Low_complexity 1 67 0 219 304 43 14 chr9 51542512 51542581 -66320046 - MIR SINE MIR -24 238 168 389 250 28 56 chr9 51543177 51543321 -66319306 - MIR SINE MIR -94 168 29 276 30 0 0 chr9 51543504 51543537 -66319090 + (CA)n Simple_repeat Simple_repeat 2 34 0 234 182 26 13 chr9 51544064 51544141 -66318486 + GA-rich Low_complexity Low_complexity 4 81 0 342 284 176 11 chr9 51544938 51545114 -66317513 + MIR SINE MIR 48 252 -10 1967 110 43 0 chr9 51546063 51546345 -66316282 - AluSg SINE Alu -16 294 1 211 290 16 0 chr9 51547776 51547838 -66314789 - L2 LINE L2 -5 3308 3246 245 286 187 0 chr9 51548483 51548574 -66314053 + L2 LINE L2 3160 3267 -5 2082 122 21 0 chr9 51549779 51550067 -66312560 + AluSq SINE Alu 1 294 -19 402 98 74 0 chr9 51550067 51550189 -66312438 + (TA)n Simple_repeat Simple_repeat 1 131 0 23 54 0 0 chr9 51551656 51551693 -66310934 + AT_rich Low_complexity Low_complexity 1 37 0 2634 116 5 24 chr9 51551720 51552091 -66310536 + THE1B LTR MaLR 1 364 0 550 280 149 11 chr9 51552091 51552266 -66310361 - MIR SINE MIR -62 200 2 2243 102 0 0 chr9 51552500 51552793 -66309834 + AluSq SINE Alu 17 309 -4 2245 83 0 7 chr9 51553377 51553665 -66308962 + AluSg SINE Alu 22 307 -3 284 290 46 30 chr9 51556699 51556822 -66305805 + MIR SINE MIR 92 216 -46 480 277 155 0 chr9 51556822 51556977 -66305650 - MER5A DNA MER1_type 0 189 11 526 241 133 6 chr9 51557210 51557368 -66305259 - MER5B DNA MER1_type 0 178 1 210 26 77 0 chr9 51557947 51557986 -66304641 + (TA)n Simple_repeat Simple_repeat 1 42 0 1164 151 5 0 chr9 51558049 51558234 -66304393 + MER5A DNA MER1_type 3 188 -1 22 56 0 0 chr9 51559054 51559090 -66303537 + AT_rich Low_complexity Low_complexity 1 36 0 286 157 24 60 chr9 51559124 51559168 -66303459 + L1PB4 LINE L1 6077 6118 -38 2123 110 0 44 chr9 51559168 51559487 -66303140 + AluSx SINE Alu 1 305 -7 286 157 24 60 chr9 51559487 51559525 -66303102 + L1PB4 LINE L1 6118 6156 0 28 0 0 0 chr9 51559528 51559556 -66303071 + AT_rich Low_complexity Low_complexity 1 28 0 1234 106 12 0 chr9 51559944 51560114 -66302513 - AluSp SINE Alu -141 172 1 513 185 19 0 chr9 51560166 51560274 -66302353 + L1ME3A LINE L1 6052 6161 -9 28 29 0 0 chr9 51560530 51560565 -66302062 + AT_rich Low_complexity Low_complexity 1 35 0 573 270 28 11 chr9 51560738 51560916 -66301711 + MIR SINE MIR 79 259 -3 1973 120 6 38 chr9 51561187 51561504 -66301123 + AluJb SINE Alu 1 307 -5 245 132 0 38 chr9 51561506 51561559 -66301068 + (GGAGA)n Simple_repeat Simple_repeat 1 51 0 25 51 0 0 chr9 51561809 51561848 -66300779 + AT_rich Low_complexity Low_complexity 1 39 0 397 330 149 18 chr9 51562363 51562584 -66300043 - MIR SINE MIR 0 262 13 404 152 25 0 chr9 51562812 51562891 -66299736 + CT-rich Low_complexity Low_complexity 2 82 0 266 254 290 0 chr9 51563396 51563534 -66299093 - MER5B DNA MER1_type 0 178 1 2444 103 0 0 chr9 51563579 51563890 -66298737 - AluSq SINE Alu -2 311 1 1751 189 7 3 chr9 51564668 51564969 -66297658 + AluJb SINE Alu 1 302 -10 2417 67 3 0 chr9 51564972 51565269 -66297358 + AluY SINE Alu 1 298 -13 645 214 156 7 chr9 51565326 51565480 -66297147 + MER5A DNA MER1_type 4 180 -9 181 224 47 82 chr9 51566124 51566209 -66296418 + MER5B DNA MER1_type 27 108 -70 2515 128 37 70 chr9 51566470 51566930 -66295697 + L1MC1 LINE L1 5883 6327 -6 240 257 40 0 chr9 51567012 51567086 -66295541 + MIR SINE MIR 88 164 -98 5256 49 36 0 chr9 51567332 51568029 -66294598 + L1PA6 LINE L1 5204 5925 -229 1553 280 98 50 chr9 51568441 51569065 -66293562 + L2 LINE L2 2289 2942 -372 2335 103 0 0 chr9 51569322 51569622 -66293005 - AluSx SINE Alu -12 300 1 2430 201 86 115 chr9 51569625 51570877 -66291750 - L1MC5 LINE L1 -32 7929 6715 2131 122 0 13 chr9 51570878 51571181 -66291446 - AluSg SINE Alu -11 299 1 404 264 136 49 chr9 51571220 51571485 -66291142 - L1ME4a LINE L1 -292 5829 5542 1690 145 3 87 chr9 51571487 51571798 -66290829 + AluJb SINE Alu 1 285 -27 874 200 11 6 chr9 51571822 51571997 -66290630 + AluSg/x SINE Alu 125 300 -10 286 213 35 50 chr9 51572080 51572201 -66290426 - L1ME4a LINE L1 -728 5456 5366 1561 207 3 20 chr9 51572235 51572534 -66290093 - AluJo SINE Alu -5 307 14 29 70 0 0 chr9 51572616 51572673 -66289954 + AT_rich Low_complexity Low_complexity 1 57 0 449 312 25 45 chr9 51572759 51572961 -66289666 - MIR SINE MIR -45 217 20 2065 127 17 0 chr9 51573076 51573375 -66289252 - AluSx SINE Alu -8 304 1 360 113 32 27 chr9 51573525 51573607 -66289020 + AluSq/x SINE Alu 102 147 -156 1264 131 11 0 chr9 51573718 51573909 -66288718 + AluSg/x SINE Alu 118 310 0 229 56 139 0 chr9 51574102 51574138 -66288489 + MER5C DNA MER1_type 284 324 0 2122 108 14 10 chr9 51574158 51574455 -66288172 - AluY SINE Alu -13 298 1 2391 106 3 0 chr9 51575489 51575800 -66286827 + AluSx SINE Alu 1 312 0 311 335 60 16 chr9 51576228 51576413 -66286214 + MIR SINE MIR 64 256 -6 220 194 0 60 chr9 51576774 51576841 -66285786 + L2 LINE L2 3189 3251 -62 6353 199 32 6 chr9 51577104 51578357 -66284270 - L1M2 LINE L1 -5283 1566 281 2147 162 76 2 chr9 51578356 51578776 -66283851 - L1M4 LINE L1 -401 5777 5327 * 635 259 70 45 chr9 51579075 51579318 -66283309 + MIR SINE MIR 1 249 -13 2059 148 3 0 chr9 51579327 51579631 -66282996 + AluSq SINE Alu 1 305 -8 2171 118 0 0 chr9 51580136 51580449 -66282178 - AluSx SINE Alu 0 313 1 2052 128 3 33 chr9 51580645 51580950 -66281677 + AluSx SINE Alu 1 296 -16 2057 155 0 0 chr9 51581446 51581756 -66280871 - AluSx SINE Alu -2 310 1 260 111 0 0 chr9 51582239 51582275 -66280352 - U6 snRNA snRNA -71 36 1 572 303 121 47 chr9 51582511 51582940 -66279687 - L2 LINE L2 -337 2977 2517 834 137 0 0 chr9 51582946 51583063 -66279564 + AluSq/x SINE Alu 7 123 -190 359 174 14 0 chr9 51583102 51583171 -66279456 + AluY SINE Alu 123 192 -109 226 222 0 56 chr9 51583271 51583325 -66279302 + AluSq/x SINE Alu 75 125 -177 2265 117 0 0 chr9 51583330 51583628 -66278999 + AluSx SINE Alu 1 298 -14 746 194 8 8 chr9 51583639 51583763 -66278864 + FLAM_A SINE Alu 1 124 -9 320 278 93 31 chr9 51583913 51584107 -66278520 + L1MC4a LINE L1 5724 5929 -1879 25 0 0 0 chr9 51584471 51584496 -66278131 + AT_rich Low_complexity Low_complexity 1 25 0 2352 93 0 28 chr9 51584520 51584841 -66277786 - AluSx SINE Alu 0 312 1 2007 75 60 0 chr9 51586009 51586274 -66276353 - AluY SINE Alu -10 301 21 2261 99 0 0 chr9 51586957 51587270 -66275357 - AluSx SINE Alu 0 313 1 513 185 19 0 chr9 51587322 51587430 -66275197 + L1ME3A LINE L1 6052 6161 -9 28 29 0 0 chr9 51587686 51587721 -66274906 + AT_rich Low_complexity Low_complexity 1 35 0 573 270 28 11 chr9 51587894 51588072 -66274555 + MIR SINE MIR 79 259 -3 1973 120 6 38 chr9 51588343 51588660 -66273967 + AluJb SINE Alu 1 307 -5 245 132 0 38 chr9 51588662 51588715 -66273912 + (GGAGA)n Simple_repeat Simple_repeat 1 51 0 25 51 0 0 chr9 51588965 51589004 -66273623 + AT_rich Low_complexity Low_complexity 1 39 0 420 321 149 18 chr9 51589519 51589740 -66272887 - MIR SINE MIR 0 262 13 230 236 111 0 chr9 51589895 51589967 -66272660 + MIR SINE MIR 181 260 -2 205 160 0 40 chr9 51590353 51590403 -66272224 + T-rich Low_complexity Low_complexity 2 49 0 388 253 193 13 chr9 51590976 51591126 -66271501 + MIR SINE MIR 20 196 -66 441 199 52 44 chr9 51593771 51593841 -66268786 - MER106B DNA MER1_type -20 1039 971 2212 143 5 32 chr9 51593841 51594212 -66268415 - MER46B DNA MER2_type 0 236 1 441 199 52 44 chr9 51594212 51594277 -66268350 - MER106B DNA MER1_type -88 971 903 494 293 72 12 chr9 51594334 51594501 -66268126 + MIR SINE MIR 33 209 -53 2128 124 20 0 chr9 51595025 51595331 -66267296 + AluSq SINE Alu 1 312 -1 1279 250 207 14 chr9 51598708 51598857 -66263770 - L2 LINE L2 -4 3309 3190 327 49 0 0 chr9 51598857 51598898 -66263729 + (TG)n Simple_repeat Simple_repeat 1 41 0 1279 250 207 14 chr9 51598898 51599371 -66263256 - L2 LINE L2 -123 3190 2810 2333 75 10 0 chr9 51599371 51599663 -66262964 + AluY SINE Alu 1 295 -16 1279 250 207 14 chr9 51599663 51599882 -66262745 - L2 LINE L2 -503 2810 2302 6914 124 47 18 chr9 51601455 51602651 -66259976 + Tigger3b DNA MER2_type 1 1231 0 26 0 0 0 chr9 51603652 51603678 -66258949 + AT_rich Low_complexity Low_complexity 1 26 0 379 313 62 38 chr9 51604634 51604845 -66257782 - MIR SINE MIR -13 249 34 1122 288 58 11 chr9 51605087 51605448 -66257179 - L3 LINE CR1 -3 1574 1197 2291 106 7 0 chr9 51606241 51606543 -66256084 + AluSx SINE Alu 1 304 -8 188 235 25 123 chr9 51606601 51606682 -66255945 + L2 LINE L2 3233 3305 -8 1816 150 7 7 chr9 51606836 51607116 -66255511 + AluJb SINE Alu 14 293 -19 22 56 0 0 chr9 51607163 51607199 -66255428 + AT_rich Low_complexity Low_complexity 1 36 0 35 54 0 0 chr9 51607448 51607504 -66255123 + AT_rich Low_complexity Low_complexity 1 56 0 239 235 0 62 chr9 51607642 51607723 -66254904 + MIR3 SINE MIR 132 207 -1 1011 156 35 91 chr9 51607756 51607987 -66254640 - MER20 DNA MER1_type 0 219 2 240 333 0 0 chr9 51608969 51609038 -66253589 + MER5B DNA MER1_type 1 69 -109 814 219 33 49 chr9 51609105 51609288 -66253339 - MER5A DNA MER1_type -3 186 7 372 336 0 16 chr9 51609295 51609420 -66253207 + MIR SINE MIR 35 157 -105 5687 219 71 42 chr9 51609871 51609970 -66252657 + L1ME LINE L1 2936 3031 -3135 1645 172 13 26 chr9 51609970 51610272 -66252355 + AluJb SINE Alu 1 298 -14 5687 219 71 42 chr9 51610272 51610325 -66252302 + L1ME LINE L1 3031 3081 -3085 1776 155 69 0 chr9 51610325 51610615 -66252012 + AluSx SINE Alu 1 310 -2 5687 219 71 42 chr9 51610615 51610707 -66251920 + L1ME LINE L1 3081 3169 -2997 1940 126 56 0 chr9 51610707 51610992 -66251635 + AluSx SINE Alu 1 301 -11 5687 219 71 42 chr9 51610992 51611041 -66251586 + L1ME LINE L1 3169 3215 -2951 2107 117 3 0 chr9 51611041 51611347 -66251280 + AluSx SINE Alu 1 307 0 5687 219 71 42 chr9 51611347 51613387 -66249240 + L1ME LINE L1 3215 5195 -971 3686 133 38 2 chr9 51613387 51613966 -66248661 + MER7C DNA MER2_type 3 602 0 5687 219 71 42 chr9 51613966 51614109 -66248518 + L1ME LINE L1 5195 5332 -834 2154 148 57 38 chr9 51614109 51614529 -66248098 + MSTC LTR MaLR 1 428 0 5687 219 71 42 chr9 51614529 51614815 -66247812 + L1ME LINE L1 5332 5786 -380 670 215 0 30 chr9 51614839 51614974 -66247653 + FLAM_A SINE Alu 2 132 -1 180 0 0 0 chr9 51615336 51615356 -66247271 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 333 302 65 0 chr9 51616361 51616500 -66246127 - L1M1 LINE L1 -7187 378 231 785 289 51 0 chr9 51618113 51618250 -66244377 - MIR SINE MIR -3 259 104 2152 113 3 0 chr9 51618250 51618541 -66244086 + AluSq SINE Alu 1 292 -21 785 289 51 0 chr9 51618541 51618638 -66243989 - MIR SINE MIR -158 104 13 1356 160 8 34 chr9 51619317 51619554 -66243073 + AluJo SINE Alu 9 239 -73 23 0 0 0 chr9 51619560 51619583 -66243044 + AT_rich Low_complexity Low_complexity 1 23 0 368 369 80 51 chr9 51619769 51620420 -66242207 + L2 LINE L2 2001 2670 -644 390 264 18 0 chr9 51620654 51620764 -66241863 - MIR SINE MIR 0 262 151 1919 157 0 10 chr9 51620771 51621071 -66241556 - AluSx SINE Alu -15 297 1 302 203 25 13 chr9 51621072 51621151 -66241476 + AluSp SINE Alu 108 187 -116 1940 108 0 4 chr9 51621259 51621527 -66241100 + AluSc SINE Alu 10 276 -33 321 68 0 0 chr9 51621534 51621578 -66241049 + (GGAA)n Simple_repeat Simple_repeat 3 46 0 236 270 81 36 chr9 51621578 51621689 -66240938 - MIR SINE MIR -77 131 16 282 257 153 87 chr9 51622353 51622777 -66239850 + L2 LINE L2 1431 1882 -1432 649 215 37 174 chr9 51622798 51623338 -66239289 + L2 LINE L2 2848 3313 0 1637 163 44 7 chr9 51623780 51624075 -66238552 + AluJo SINE Alu 1 306 -6 312 169 121 0 chr9 51624260 51624343 -66238284 - L1MA4 LINE L1 -6 6294 6202 310 109 0 0 chr9 51624343 51624389 -66238238 + FRAM/FAM SINE Alu 9 54 -112 430 213 0 0 chr9 51624389 51624497 -66238130 - L1MA4 LINE L1 -109 6191 6084 2194 115 3 13 chr9 51624499 51624803 -66237824 + AluSx SINE Alu 1 301 -11 2328 64 0 3 chr9 51625654 51625960 -66236667 + AluY SINE Alu 1 305 0 1210 52 0 0 chr9 51626113 51626249 -66236378 + AluSq/x SINE Alu 1 136 -176 2462 97 0 0 chr9 51626249 51626560 -66236067 + AluSx SINE Alu 1 311 -1 2366 104 0 0 chr9 51626903 51627211 -66235416 - AluY SINE Alu -3 308 1 291 339 26 17 chr9 51628445 51628560 -66234067 + L2 LINE L2 3154 3269 -3 332 278 83 0 chr9 51628669 51628802 -66233825 - L1ME LINE L1 -459 5662 5519 2426 102 0 3 chr9 51628874 51629187 -66233440 + AluSx SINE Alu 1 312 0 270 0 0 0 chr9 51629203 51629233 -66233394 + (TG)n Simple_repeat Simple_repeat 1 30 0 243 270 51 95 chr9 51629750 51629887 -66232740 + L2 LINE L2 3140 3270 -2 279 267 0 0 chr9 51630398 51630473 -66232154 - MARNA DNA Mariner -216 370 296 270 77 26 0 chr9 51630647 51630686 -66231941 + MER4E LTR ERV1 653 692 -74 21 0 0 0 chr9 51630686 51630707 -66231920 + AT_rich Low_complexity Low_complexity 1 21 0 218 191 0 15 chr9 51631118 51631186 -66231441 + A-rich Low_complexity Low_complexity 2 68 0 326 256 27 96 chr9 51631520 51631739 -66230888 + L1M4 LINE L1 2995 3198 -2948 22 35 0 0 chr9 51631749 51631778 -66230849 + AT_rich Low_complexity Low_complexity 1 29 0 332 155 14 0 chr9 51632122 51632193 -66230434 + A-rich Low_complexity Low_complexity 2 73 0 24 32 0 0 chr9 51632315 51632346 -66230281 + AT_rich Low_complexity Low_complexity 1 31 0 413 316 71 62 chr9 51633217 51633713 -66228914 + L2 LINE L2 2478 2977 -337 214 364 100 9 chr9 51634438 51634548 -66228079 + L2 LINE L2 3153 3272 0 455 294 91 20 chr9 51635175 51635433 -66227194 + L1ME4a LINE L1 5617 5900 -221 1192 177 80 65 chr9 51635433 51635772 -66226855 + MER2 DNA MER2_type 1 344 0 455 294 91 20 chr9 51635772 51635809 -66226818 + L1ME4a LINE L1 5900 5933 -188 25 0 0 0 chr9 51637662 51637687 -66224940 + AT_rich Low_complexity Low_complexity 1 25 0 294 29 0 0 chr9 51637954 51637989 -66224638 + (CA)n Simple_repeat Simple_repeat 2 36 0 748 126 0 16 chr9 51638312 51638439 -66224188 + 7SK RNA RNA 1 125 -68 415 178 0 0 chr9 51638483 51638556 -66224071 + 7SK RNA RNA 121 193 0 218 236 102 71 chr9 51639068 51639195 -66223432 + L3b LINE CR1 1234 1364 -219 232 250 18 0 chr9 51639446 51639502 -66223125 - MLT1J2 LTR MaLR -119 331 275 2009 165 3 9 chr9 51640901 51641247 -66221380 + MER2 DNA MER2_type 1 344 0 319 111 16 16 chr9 51641439 51641502 -66221125 + (TTTCC)n Simple_repeat Simple_repeat 2 64 0 2259 121 0 3 chr9 51641502 51641815 -66220812 - AluSx SINE Alu 0 312 1 550 84 24 0 chr9 51642071 51642154 -66220473 - MER51A LTR ERV1 -81 553 469 914 125 14 21 chr9 51642317 51642461 -66220166 + FLAM_C SINE Alu 1 143 0 216 0 0 0 chr9 51643315 51643339 -66219288 + (T)n Simple_repeat Simple_repeat 1 24 0 21 0 0 0 chr9 51643400 51643421 -66219206 + AT_rich Low_complexity Low_complexity 1 21 0 1566 188 0 52 chr9 51643425 51643733 -66218894 - AluJo SINE Alu -19 293 2 231 268 122 44 chr9 51643937 51644142 -66218485 - HAL1 LINE L1 -2 2505 2285 * 1505 235 151 87 chr9 51644122 51644844 -66217783 - HAL1 LINE L1 -586 1921 1247 1751 155 14 0 chr9 51644844 51645122 -66217505 - AluJb SINE Alu -17 295 14 1505 235 151 87 chr9 51645122 51645205 -66217422 - HAL1 LINE L1 -1260 1247 1171 2493 120 29 2 chr9 51645205 51645614 -66217013 - L1MA2 LINE L1 0 6304 5885 1505 235 151 87 chr9 51645614 51645694 -66216933 - HAL1 LINE L1 -1336 1171 1098 2202 125 0 0 chr9 51645694 51645990 -66216637 - AluSx SINE Alu -16 296 1 1505 235 151 87 chr9 51645990 51646362 -66216265 - HAL1 LINE L1 -1409 1098 581 576 211 47 23 chr9 51646407 51646578 -66216049 - HAL1 LINE L1 -2233 274 100 682 167 22 7 chr9 51646678 51646816 -66215811 + MER84 LTR ERVI 368 507 0 2154 109 13 3 chr9 51648579 51648881 -66213746 - AluSq SINE Alu -4 309 5 26 30 0 0 chr9 51648956 51648989 -66213638 + AT_rich Low_complexity Low_complexity 1 33 0 514 146 0 0 chr9 51649400 51649482 -66213145 + Tigger1 DNA MER2_type 2337 2418 0 183 80 0 0 chr9 51650862 51650887 -66211740 + (TTTTC)n Simple_repeat Simple_repeat 4 28 0 300 312 35 50 chr9 51651756 51651897 -66210730 + MIR SINE MIR 12 150 -112 882 119 0 32 chr9 51652500 51652663 -66209964 + FLAM_C SINE Alu 1 133 0 690 190 158 32 chr9 51652691 51652975 -66209652 - L1MC5 LINE L1 -36 7925 7606 21 36 0 0 chr9 51653956 51653984 -66208643 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr9 51654971 51654996 -66207631 + AT_rich Low_complexity Low_complexity 1 25 0 198 0 0 0 chr9 51655606 51655628 -66206999 + (TG)n Simple_repeat Simple_repeat 2 23 0 189 256 0 0 chr9 51655889 51655932 -66206695 - MIR SINE MIR -15 247 205 405 261 158 24 chr9 51657196 51657361 -66205266 + MIR3 SINE MIR 16 202 -6 218 227 0 0 chr9 51657475 51657519 -66205108 + A-rich Low_complexity Low_complexity 1 44 0 1349 210 10 32 chr9 51658144 51658453 -66204174 - AluSx SINE Alu -10 302 1 21 0 0 0 chr9 51658484 51658505 -66204122 + AT_rich Low_complexity Low_complexity 1 21 0 1560 88 5 0 chr9 51658580 51658784 -66203843 + AluSp SINE Alu 103 307 -6 241 229 0 0 chr9 51659164 51659212 -66203415 + MER5B DNA MER1_type 2 49 -129 15373 134 24 30 chr9 51659224 51660175 -66202452 - Tigger1 DNA MER2_type 0 2418 1463 2417 72 0 23 chr9 51660175 51660482 -66202145 + AluY SINE Alu 1 300 -11 15373 134 24 30 chr9 51660482 51661963 -66200664 - Tigger1 DNA MER2_type -955 1463 1 1373 171 6 19 chr9 51661967 51662197 -66200430 + L1MB2 LINE L1 5679 5835 -336 1662 178 20 7 chr9 51662197 51662490 -66200137 + AluJb SINE Alu 1 297 -15 1373 171 6 19 chr9 51662490 51662562 -66200065 + L1MB2 LINE L1 5835 5906 -265 2052 121 0 19 chr9 51663190 51663497 -66199130 - AluSx SINE Alu -11 301 1 27 0 0 0 chr9 51663805 51663832 -66198795 + AT_rich Low_complexity Low_complexity 1 27 0 1383 171 83 4 chr9 51663864 51664104 -66198523 - AluJb SINE Alu -27 285 27 753 86 0 0 chr9 51664154 51664247 -66198380 + HY4 scRNA scRNA 1 93 0 330 275 0 0 chr9 51664249 51664358 -66198269 + (TA)n Simple_repeat Simple_repeat 1 109 0 4047 184 36 11 chr9 51664521 51665235 -66197392 - MER44D DNA MER2_type 0 605 2 1659 201 56 34 chr9 51665618 51665716 -66196911 + MLT1B LTR MaLR 1 95 -295 2338 99 0 3 chr9 51665716 51666020 -66196607 + AluSq SINE Alu 1 303 -10 1659 201 56 34 chr9 51666020 51666299 -66196328 + MLT1B LTR MaLR 95 386 -4 265 231 33 55 chr9 51666452 51666543 -66196084 + MIR3 SINE MIR 96 184 -24 2230 110 0 0 chr9 51666738 51667029 -66195598 + AluSx SINE Alu 1 291 -21 2322 115 0 0 chr9 51667086 51667399 -66195228 + AluSq SINE Alu 1 313 0 250 190 17 0 chr9 51668050 51668108 -66194519 + L1M4 LINE L1 4596 4654 -1492 2161 121 0 3 chr9 51668114 51668412 -66194215 + AluSx SINE Alu 1 297 -15 241 26 53 0 chr9 51668412 51668450 -66194177 + (TA)n Simple_repeat Simple_repeat 2 41 0 1344 173 53 49 chr9 51668506 51668790 -66193837 + AluJo SINE Alu 3 287 -25 733 226 0 8 chr9 51668872 51669005 -66193622 - FLAM_A SINE Alu -1 132 1 263 93 56 0 chr9 51669055 51669109 -66193518 + CT-rich Low_complexity Low_complexity 2 58 0 645 89 8 32 chr9 51669109 51669233 -66193394 + SVA Other Other 1 121 -1265 306 0 0 0 chr9 51669623 51669657 -66192970 + (T)n Simple_repeat Simple_repeat 1 34 0 2171 106 10 3 chr9 51669718 51670011 -66192616 + AluSx SINE Alu 1 295 -17 335 327 67 52 chr9 51670073 51670400 -66192227 - L1ME4a LINE L1 0 6121 5790 735 239 122 0 chr9 51670677 51670874 -66191753 - MER115 DNA AcHobo -2 691 471 327 360 8 0 chr9 51670923 51671048 -66191579 - MER115 DNA AcHobo -567 126 1 209 257 29 0 chr9 51671270 51671340 -66191287 + (TA)n Simple_repeat Simple_repeat 1 72 0 1693 178 7 24 chr9 51671620 51671918 -66190709 + AluJb SINE Alu 6 298 -14 223 311 111 34 chr9 51673459 51673694 -66188933 - L3 LINE CR1 -628 949 697 2110 133 0 3 chr9 51673719 51674019 -66188608 + AluSx SINE Alu 1 299 -13 883 200 0 0 chr9 51674056 51674201 -66188426 + FRAM SINE Alu 1 145 -31 25 31 0 0 chr9 51674206 51674238 -66188389 + AT_rich Low_complexity Low_complexity 1 32 0 34 0 0 0 chr9 51674666 51674700 -66187927 + AT_rich Low_complexity Low_complexity 1 34 0 1496 88 39 0 chr9 51674700 51674904 -66187723 - L1PA10 LINE L1 -5 6163 5952 672 171 60 0 chr9 51675312 51675429 -66187198 + FLAM_C SINE Alu 1 124 -19 981 245 25 46 chr9 51675945 51676272 -66186355 - MER46C DNA MER2_type -12 326 7 822 220 35 0 chr9 51676515 51676656 -66185971 - FAM SINE Alu -38 147 2 466 236 73 0 chr9 51678392 51678502 -66184125 + MER5A DNA MER1_type 1 118 -71 234 258 15 0 chr9 51680136 51680202 -66182425 - L3 LINE CR1 -96 1481 1415 1319 153 0 15 chr9 51680381 51680583 -66182044 + AluSg/x SINE Alu 82 280 -30 197 304 0 0 chr9 51680874 51680920 -66181707 + L2 LINE L2 3210 3255 -17 1094 258 65 54 chr9 51681013 51681195 -66181432 - L2 LINE L2 -288 3025 2847 2215 94 21 0 chr9 51681195 51681481 -66181146 + AluSg SINE Alu 1 292 -18 1976 121 43 3 chr9 51681489 51681771 -66180856 + AluSg SINE Alu 1 293 -17 1094 258 65 54 chr9 51681771 51681994 -66180633 - L2 LINE L2 -472 2841 2611 2265 92 10 0 chr9 51682176 51682468 -66180159 - AluSq SINE Alu -12 301 7 870 163 78 0 chr9 51682473 51682614 -66180013 - MER46B DNA MER2_type -209 27 1 2239 64 0 20 chr9 51682718 51683013 -66179614 - AluY SINE Alu -21 290 2 2265 100 3 3 chr9 51683919 51684218 -66178409 + AluSq SINE Alu 1 299 -14 1034 205 12 0 chr9 51684892 51685063 -66177564 - FAM SINE Alu -1 174 2 803 144 7 22 chr9 51685147 51685286 -66177341 + AluJo SINE Alu 1 137 -175 2230 111 3 0 chr9 51685603 51685901 -66176726 - AluSq SINE Alu -6 307 9 1693 168 97 175 chr9 51685932 51686499 -66176128 - Charlie1 DNA MER1_type 0 2761 1 2070 130 3 3 chr9 51686999 51687300 -66175327 + AluSx SINE Alu 1 301 -11 198 0 0 0 chr9 51687829 51687851 -66174776 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1891 138 0 45 chr9 51687854 51688166 -66174461 - AluSx SINE Alu -14 298 1 1769 136 7 28 chr9 51688243 51688529 -66174098 + AluJb SINE Alu 1 280 -32 222 37 0 0 chr9 51688532 51688559 -66174068 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 194 250 0 0 chr9 51688618 51688670 -66173957 - L2 LINE L2 0 3313 3262 253 301 168 0 chr9 51688745 51688858 -66173769 - L2 LINE L2 -4 3268 3137 417 257 169 0 chr9 51689077 51689225 -66173402 + MIR SINE MIR 90 262 0 189 0 0 0 chr9 51689605 51689626 -66173001 + (A)n Simple_repeat Simple_repeat 1 21 0 1868 234 21 23 chr9 51690020 51690537 -66172090 + L1M1 LINE L1 2328 2843 -3303 3018 158 5 52 chr9 51690544 51691514 -66171113 + L1M1 LINE L1 4735 5650 -653 2560 125 32 5 chr9 51691600 51692001 -66170626 - L1MB2 LINE L1 0 6171 5760 238 273 78 0 chr9 51692215 51692292 -66170335 + L2 LINE L2 3228 3310 -3 293 221 87 0 chr9 51692363 51692467 -66170160 + L1ME4a LINE L1 5834 5946 -175 768 205 0 16 chr9 51692467 51692594 -66170033 + FLAM_A SINE Alu 1 125 -8 2372 98 3 0 chr9 51692614 51692920 -66169707 + AluSp SINE Alu 4 310 -3 1953 109 7 7 chr9 51692952 51693237 -66169390 + AluY SINE Alu 1 285 -26 435 68 0 0 chr9 51693237 51693296 -66169331 + (CATA)n Simple_repeat Simple_repeat 2 60 0 1196 258 52 12 chr9 51693531 51693860 -66168767 + HAL1 LINE L1 1664 2005 -502 738 249 69 58 chr9 51693905 51694298 -66168329 + HAL1 LINE L1 2111 2507 0 892 139 31 0 chr9 51694536 51694665 -66167962 + FLAM_C SINE Alu 1 133 0 198 103 0 0 chr9 51695248 51695277 -66167350 + (T)n Simple_repeat Simple_repeat 1 29 0 253 254 23 85 chr9 51695318 51695448 -66167179 + MIR SINE MIR 96 217 -45 534 261 144 11 chr9 51695455 51695643 -66166984 - MIR SINE MIR -31 231 19 211 224 201 28 chr9 51696867 51696972 -66165655 + MIR SINE MIR 35 151 -63 212 143 18 0 chr9 51697056 51697112 -66165515 + T-rich Low_complexity Low_complexity 1 57 0 1627 159 52 7 chr9 51697138 51697371 -66165256 - AluJb SINE Alu 0 363 111 423 0 0 0 chr9 51697371 51697418 -66165209 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1627 159 52 7 chr9 51697418 51697535 -66165092 - AluJb SINE Alu -252 111 1 1572 155 4 4 chr9 51697848 51698139 -66164488 - AluJb SINE Alu 0 320 30 480 214 36 71 chr9 51698542 51698682 -66163945 + MER5A DNA MER1_type 18 152 -37 1893 162 0 13 chr9 51698716 51699025 -66163602 + AluJb SINE Alu 3 307 -5 21 0 0 0 chr9 51699066 51699087 -66163540 + AT_rich Low_complexity Low_complexity 1 21 0 314 347 50 8 chr9 51699118 51699239 -66163388 - L2 LINE L2 -11 3261 3136 18233 125 27 11 chr9 51699260 51699448 -66163179 + L1M1 LINE L1 17 201 -7364 3672 125 85 8 chr9 51699448 51700038 -66162589 - L1PA14 LINE L1 0 6161 5527 18233 125 27 11 chr9 51700038 51702114 -66160513 + L1M1 LINE L1 201 2347 -5218 1849 185 7 3 chr9 51702114 51702412 -66160215 + AluJb SINE Alu 9 307 -5 18233 125 27 11 chr9 51702412 51703116 -66159511 + L1M1 LINE L1 2347 3039 -4526 2314 106 0 3 chr9 51703303 51703604 -66159023 - AluSx SINE Alu -12 300 1 250 193 0 0 chr9 51704553 51704610 -66158017 - L1ME4a LINE L1 -1 6120 6064 351 253 12 0 chr9 51704610 51704693 -66157934 + L2 LINE L2 3217 3300 -13 2315 83 0 3 chr9 51704694 51704982 -66157645 - AluSg SINE Alu -17 293 7 743 108 0 0 chr9 51705318 51705420 -66157207 - U6 snRNA snRNA -5 102 1 363 23 0 0 chr9 51706605 51706649 -66155978 + (CA)n Simple_repeat Simple_repeat 1 44 0 1676 202 0 3 chr9 51706651 51706938 -66155689 - AluJo SINE Alu -26 286 1 252 277 139 29 chr9 51707141 51707278 -66155349 - MIR SINE MIR 0 262 111 1534 198 6 52 chr9 51708116 51708440 -66154187 + AluJb SINE Alu 1 309 -3 489 163 0 0 chr9 51708605 51708685 -66153942 - MADE1 DNA Mariner 0 80 1 338 322 50 10 chr9 51708890 51709191 -66153436 - L1M4 LINE L1 -1161 4985 4673 207 0 0 0 chr9 51709207 51709230 -66153397 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 6532 82 17 44 chr9 51709237 51710198 -66152429 - SVA Other Other -17 1369 435 230 279 139 39 chr9 51710450 51710579 -66152048 + L2 LINE L2 2921 3062 -210 186 43 0 0 chr9 51711039 51711062 -66151565 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 850 210 85 28 chr9 51711062 51711310 -66151317 - L2 LINE L2 -13 3300 3039 187 239 22 0 chr9 51711771 51711817 -66150810 - L2 LINE L2 -214 3058 3012 288 0 0 0 chr9 51712192 51712224 -66150403 + (TG)n Simple_repeat Simple_repeat 1 32 0 203 156 0 0 chr9 51713312 51713344 -66149283 + MIR SINE MIR 114 145 -63 329 223 250 0 chr9 51714091 51714203 -66148424 + MER117 DNA MER1_type 11 150 -47 181 390 0 0 chr9 51714804 51714886 -66147741 - MIR SINE MIR -94 114 33 844 318 69 45 chr9 51715022 51715118 -66147509 + L1M4 LINE L1 3070 3162 -2984 1793 131 67 25 chr9 51715118 51715400 -66147227 + AluSx SINE Alu 9 302 -10 844 318 69 45 chr9 51715400 51716381 -66146246 + L1M4 LINE L1 3162 4173 -1973 606 250 76 0 chr9 51717009 51717153 -66145474 + MIR SINE MIR 1 155 -107 * 836 256 97 0 chr9 51717146 51717373 -66145254 - MIR SINE MIR -1 261 13 1246 148 52 19 chr9 51717704 51717914 -66144713 - AluJo SINE Alu -95 217 1 204 348 144 0 chr9 51717987 51718105 -66144522 + MIR3 SINE MIR 53 187 -21 2191 145 0 0 chr9 51719305 51719616 -66143011 - AluSx SINE Alu -1 311 1 191 289 0 0 chr9 51720158 51720203 -66142424 - MIR SINE MIR -56 152 108 2289 109 3 0 chr9 51720634 51720928 -66141699 + AluSp SINE Alu 1 295 -18 330 281 11 0 chr9 51721084 51721173 -66141454 + MER117 DNA MER1_type 1 90 -107 643 255 108 47 chr9 51721437 51721715 -66140912 - MLT1I LTR MaLR -8 401 107 345 242 133 8 chr9 51721775 51721895 -66140732 + MIR SINE MIR 116 250 -12 322 193 23 34 chr9 51722515 51722603 -66140024 - MIR SINE MIR -10 252 166 727 253 142 4 chr9 51722737 51722962 -66139665 - MIR SINE MIR -5 257 2 557 310 34 57 chr9 51722988 51723285 -66139342 + L3 LINE CR1 1249 1538 -39 181 292 69 76 chr9 51724660 51724804 -66137823 + MIR3 SINE MIR 3 145 -63 186 43 0 0 chr9 51724858 51724881 -66137746 + (TG)n Simple_repeat Simple_repeat 2 24 0 363 289 10 0 chr9 51725374 51725478 -66137149 + MIR SINE MIR 32 136 -126 206 287 26 61 chr9 51725558 51725673 -66136954 - MIR SINE MIR -40 222 112 448 274 39 33 chr9 51726561 51726714 -66135913 + MIR SINE MIR 2 155 -107 474 215 74 0 chr9 51726724 51726845 -66135782 - MIR SINE MIR -2 260 131 37 0 0 0 chr9 51727039 51727076 -66135551 + AT_rich Low_complexity Low_complexity 1 37 0 656 273 79 59 chr9 51727284 51727690 -66134937 + MLT1K LTR MaLR 160 573 -15 323 280 105 59 chr9 51728034 51728373 -66134254 + L2 LINE L2 2712 3143 -129 441 297 72 65 chr9 51728394 51728684 -66133943 + L2 LINE L2 2936 3227 -86 522 260 32 0 chr9 51729780 51729934 -66132693 - MLT1I LTR MaLR -15 394 236 470 322 33 40 chr9 51730080 51730353 -66132274 - MLT1I LTR MaLR -132 277 7 625 212 21 32 chr9 51730571 51730760 -66131867 + L1M4 LINE L1 4132 4318 -1828 794 265 93 36 chr9 51730861 51731280 -66131347 + MLT1J LTR MaLR 69 511 0 2223 115 0 13 chr9 51731569 51731882 -66130745 - AluSg SINE Alu -1 309 1 261 307 114 0 chr9 51731972 51732086 -66130541 - L3 LINE CR1 -36 1541 1415 299 362 8 8 chr9 51732315 51732442 -66130185 + L2 LINE L2 3145 3271 -1 372 290 32 32 chr9 51732761 51732885 -66129742 + MIR SINE MIR 33 156 -106 967 82 0 0 chr9 51733101 51733236 -66129391 - L1P3 LINE L1 -585 5569 5435 896 218 124 0 chr9 51734607 51734800 -66127827 - MIR SINE MIR -26 236 20 257 326 83 21 chr9 51735092 51735236 -66127391 + L2 LINE L2 2826 2978 -294 806 309 23 15 chr9 51735987 51736478 -66126149 + LTR67 LTR ERVL 19 557 0 420 238 87 35 chr9 51737150 51737322 -66125305 + L2 LINE L2 2910 3090 -182 478 281 40 62 chr9 51737367 51737591 -66125036 - MIR SINE MIR -10 252 34 327 262 13 42 chr9 51737636 51737794 -66124833 + MIR SINE MIR 64 214 -48 764 175 0 0 chr9 51739117 51739237 -66123390 + FLAM_A SINE Alu 1 120 -13 970 275 0 4 chr9 51739800 51740040 -66122587 + MIR SINE MIR 1 239 -23 419 316 98 57 chr9 51740704 51740948 -66121679 - L2 LINE L2 0 3272 3019 406 269 39 18 chr9 51741189 51741366 -66121261 - MIR SINE MIR -71 191 19 404 287 173 7 chr9 51741633 51741783 -66120844 + MIR3 SINE MIR 20 194 -14 2347 160 49 39 chr9 51741999 51742493 -66120134 + MLT1D LTR MaLR 1 499 -6 580 208 135 78 chr9 51742664 51742856 -66119771 - MIR SINE MIR -36 226 24 713 258 96 37 chr9 51743059 51743381 -66119246 - MLT1D LTR MaLR -164 341 1 368 346 10 0 chr9 51743525 51743629 -66118998 + L2 LINE L2 3159 3263 -9 951 221 77 17 chr9 51743800 51744035 -66118592 + MIR SINE MIR 14 262 0 186 228 70 0 chr9 51744927 51744984 -66117643 + MIR SINE MIR 61 121 -87 298 346 46 20 chr9 51744991 51745144 -66117483 + L3 LINE CR1 1272 1428 -149 514 269 123 102 chr9 51745538 51745987 -66116640 - L2 LINE L2 0 3272 2815 288 273 81 87 chr9 51746336 51746508 -66116119 + MIR3 SINE MIR 32 202 -6 499 243 18 59 chr9 51747091 51747260 -66115367 + L2 LINE L2 2898 3059 -213 340 255 82 65 chr9 51747536 51747720 -66114907 - MIR SINE MIR -56 206 20 812 158 0 22 chr9 51748703 51748842 -66113785 + AluJo SINE Alu 5 140 -172 824 153 0 0 chr9 51748879 51748997 -66113630 + AluJo SINE Alu 129 246 -66 331 258 135 0 chr9 51749000 51749089 -66113538 + L2 LINE L2 3213 3313 0 384 237 53 24 chr9 51749274 51749443 -66113184 + MER20B DNA MER1_type 605 778 -5 524 267 61 113 chr9 51749651 51750207 -66112420 - L1MC4a LINE L1 -529 5592 5356 414 286 82 18 chr9 51750278 51750449 -66112178 - L1MC4a LINE L1 -846 5300 5119 1817 153 53 0 chr9 51750507 51750789 -66111838 + AluJo SINE Alu 1 297 -15 300 294 100 18 chr9 51750974 51751302 -66111325 - L1MC4a LINE L1 -1296 4850 4498 21 0 0 0 chr9 51751352 51751373 -66111254 + AT_rich Low_complexity Low_complexity 1 21 0 2083 167 0 0 chr9 51751391 51751702 -66110925 - AluSx SINE Alu -1 311 1 21 82 0 0 chr9 51751743 51751792 -66110835 + AT_rich Low_complexity Low_complexity 1 49 0 483 235 134 32 chr9 51752020 51752207 -66110420 - MER102b DNA MER1_type -11 330 125 7324 92 40 21 chr9 51752409 51753102 -66109525 + Tigger1 DNA MER2_type 4 725 -1693 1997 150 7 0 chr9 51753102 51753395 -66109232 + AluJo SINE Alu 5 299 -13 7324 92 40 21 chr9 51753395 51753971 -66108656 + Tigger1 DNA MER2_type 725 1289 -1129 287 197 0 14 chr9 51754573 51754644 -66107983 - LTR37B LTR ERV1 0 468 399 1979 103 0 66 chr9 51754649 51754969 -66107658 - AluY SINE Alu -12 299 1 237 180 0 20 chr9 51754970 51755020 -66107607 - L1MC5 LINE L1 -826 7135 7087 2141 112 3 0 chr9 51755027 51755332 -66107295 - AluY SINE Alu -5 306 1 8048 157 62 4 chr9 51755334 51757349 -66105278 - L1 LINE L1 -3319 3529 1394 923 215 115 64 chr9 51757450 51757762 -66104865 - MLT1C LTR MaLR -104 363 36 684 316 139 24 chr9 51757775 51758155 -66104472 - MLT1K LTR MaLR -158 430 7 561 293 57 25 chr9 51758195 51758475 -66104152 + L3 LINE CR1 1245 1533 -44 549 214 209 16 chr9 51758475 51758534 -66104093 + MER112 DNA MER1_type 1 47 -213 297 0 0 0 chr9 51758534 51758567 -66104060 + (CA)n Simple_repeat Simple_repeat 2 34 0 549 214 209 16 chr9 51758567 51758689 -66103938 + MER112 DNA MER1_type 47 217 -43 266 224 17 0 chr9 51758698 51758756 -66103871 + L3 LINE CR1 1518 1576 -1 378 0 0 0 chr9 51759321 51759363 -66103264 + (TG)n Simple_repeat Simple_repeat 1 42 0 232 235 0 0 chr9 51759417 51759468 -66103159 + (TGGA)n Simple_repeat Simple_repeat 3 53 0 1739 205 77 12 chr9 51759486 51759901 -66102726 - L2 LINE L2 0 3313 2872 580 182 9 0 chr9 51759901 51760011 -66102616 - LTR16A LTR ERVL -19 431 321 793 296 5 9 chr9 51760018 51760241 -66102386 - LTR16A LTR ERVL -93 357 136 1431 259 163 6 chr9 51760356 51760865 -66101762 - L2 LINE L2 -511 2803 2215 187 271 42 0 chr9 51761144 51761192 -66101435 + L3b LINE CR1 1517 1566 -17 1001 126 9 37 chr9 51761594 51761809 -66100818 + L1M1 LINE L1 3036 3244 -4321 1910 141 0 20 chr9 51761810 51762115 -66100512 + AluSx SINE Alu 1 299 -13 4671 185 36 4 chr9 51762143 51763289 -66099338 + L1M1 LINE L1 3399 4583 -2982 393 127 0 14 chr9 51763428 51763499 -66099128 + MER53 DNA DNA 108 177 -12 1104 139 0 0 chr9 51763615 51763787 -66098840 - AluSg/x SINE Alu -4 308 137 473 223 183 30 chr9 51763921 51764118 -66098509 + MLT1H LTR MaLR 5 231 -318 1869 118 0 45 chr9 51764320 51764608 -66098019 + AluSg SINE Alu 1 275 -35 22 0 0 0 chr9 51764618 51764640 -66097987 + AT_rich Low_complexity Low_complexity 1 22 0 1580 160 3 17 chr9 51764694 51765005 -66097622 - AluJb SINE Alu 0 307 1 25 0 0 0 chr9 51765013 51765038 -66097589 + AT_rich Low_complexity Low_complexity 1 25 0 1996 101 0 11 chr9 51766021 51766349 -66096278 - AluSx SINE Alu 0 325 1 251 68 0 0 chr9 51766403 51766447 -66096180 + AluSg/q SINE Alu 260 303 0 1389 174 20 47 chr9 51766463 51766762 -66095865 + AluJo SINE Alu 8 298 -14 290 247 22 45 chr9 51766851 51766940 -66095687 - L1ME4a LINE L1 -70 6051 5965 1531 127 35 0 chr9 51767058 51767287 -66095340 + LTR54 LTR ERV1 1 237 -273 886 136 26 19 chr9 51767301 51767456 -66095171 - AluSg/x SINE Alu -4 308 153 838 83 13 83 chr9 51767517 51767575 -66095052 - L1PB1 LINE L1 -2 6149 6088 2273 93 3 6 chr9 51767575 51767886 -66094741 - AluSp SINE Alu -3 310 1 838 83 13 83 chr9 51767886 51767983 -66094644 - L1PB1 LINE L1 -63 6088 6005 1251 123 21 0 chr9 51768097 51768284 -66094343 - MLT1B LTR MaLR -199 191 1 692 226 0 0 chr9 51769013 51769146 -66093481 + FLAM_A SINE Alu 1 133 0 399 276 0 9 chr9 51769809 51769914 -66092713 - MLT1J2 LTR MaLR 0 450 347 263 167 21 0 chr9 51769898 51769946 -66092681 + MLT1E1 LTR MaLR 507 555 -99 * 1140 200 48 51 chr9 51769965 51770281 -66092346 - MLT1J2 LTR MaLR -119 392 13 194 132 0 132 chr9 51770618 51770671 -66091956 - L2 LINE L2 -10 3262 3217 1761 161 6 6 chr9 51772471 51772782 -66089845 + AluJb SINE Alu 1 311 -1 901 267 5 9 chr9 51772908 51773129 -66089498 + MIR SINE MIR 32 251 -11 582 118 45 27 chr9 51773143 51773253 -66089374 - MLT1C LTR MaLR -7 460 349 321 210 328 0 chr9 51773405 51773524 -66089103 - L3 LINE CR1 -119 1458 1301 429 70 0 0 chr9 51774477 51774534 -66088093 + (CA)n Simple_repeat Simple_repeat 1 57 0 685 226 159 26 chr9 51774815 51775041 -66087586 - MIR SINE MIR -3 259 4 339 261 194 37 chr9 51775051 51775185 -66087442 - MIR SINE MIR -106 156 2 190 308 60 60 chr9 51775273 51775406 -66087221 + L2 LINE L2 2921 3053 -219 348 133 0 0 chr9 51777434 51777494 -66085133 + (GA)n Simple_repeat Simple_repeat 2 61 0 768 274 41 0 chr9 51778978 51779197 -66083430 - MIR SINE MIR 0 262 35 403 224 121 0 chr9 51779313 51779429 -66083198 + MIR3 SINE MIR 35 164 -44 383 278 38 41 chr9 51779586 51779771 -66082856 - MIR3 SINE MIR -61 147 11 324 267 41 14 chr9 51780761 51780946 -66081681 + MER20B DNA MER1_type 6 240 -543 717 161 0 0 chr9 51781984 51782133 -66080494 + (TG)n Simple_repeat Simple_repeat 2 150 0 201 214 0 0 chr9 51782462 51782504 -66080123 - MIR SINE MIR -109 153 112 1069 271 63 48 chr9 51782549 51783092 -66079535 + LTR67 LTR ERVL 7 557 0 791 257 33 33 chr9 51783263 51783508 -66079119 + MIR SINE MIR 6 250 -12 491 303 46 7 chr9 51783928 51784080 -66078547 - MER91A DNA MER1_type -4 192 35 508 233 67 0 chr9 51785719 51785839 -66076788 + MIR SINE MIR 133 260 -2 24 0 0 0 chr9 51786326 51786350 -66076277 + AT_rich Low_complexity Low_complexity 1 24 0 2110 85 4 0 chr9 51786629 51786935 -66075692 + AluSq SINE Alu 1 307 0 2158 112 0 13 chr9 51787073 51787387 -66075240 - AluSx SINE Alu -2 310 1 1163 232 124 3 chr9 51787541 51787847 -66074780 - MER2 DNA MER2_type -1 343 1 199 133 0 0 chr9 51787860 51787890 -66074737 - L2 LINE L2 -21 3292 3263 270 0 0 0 chr9 51787925 51787955 -66074672 + (TG)n Simple_repeat Simple_repeat 1 30 0 1691 153 28 65 chr9 51788036 51788318 -66074309 - L1MA4 LINE L1 -6 6294 6030 1909 153 0 3 chr9 51788318 51788631 -66073996 - AluJb SINE Alu 0 312 1 1691 153 28 65 chr9 51788631 51788746 -66073881 - L1MA4 LINE L1 -270 6030 5912 251 222 0 14 chr9 51789424 51789496 -66073131 + CT-rich Low_complexity Low_complexity 1 71 0 190 200 0 91 chr9 51791021 51791076 -66071551 + L2 LINE L2 2927 2976 -337 257 233 78 44 chr9 51791404 51791494 -66071133 + MIR SINE MIR 162 254 -8 1341 77 0 0 chr9 51791523 51791760 -66070867 + (TGGA)n Simple_repeat Simple_repeat 1 237 0 349 183 49 12 chr9 51791860 51791942 -66070685 - AluSg/x SINE Alu -111 191 107 1827 134 43 3 chr9 51792464 51792763 -66069864 + AluSx SINE Alu 1 311 -1 279 315 91 0 chr9 51793379 51793522 -66069105 + MIR3 SINE MIR 29 184 -24 262 311 68 31 chr9 51793684 51793845 -66068782 + MIR SINE MIR 9 175 -87 1014 167 42 23 chr9 51793950 51794165 -66068462 + L1MD1 LINE L1 6021 6239 -3 421 275 77 97 chr9 51794254 51794501 -66068126 + L2 LINE L2 3030 3271 -1 2094 109 10 0 chr9 51794690 51794993 -66067634 + AluSp SINE Alu 1 306 -7 562 281 19 17 chr9 51795433 51795624 -66067003 + MIR SINE MIR 5 194 -61 311 306 0 24 chr9 51795803 51795927 -66066700 - MIR3 SINE MIR 0 208 88 360 295 52 67 chr9 51796499 51796709 -66065918 - L1MC4 LINE L1 -7 8035 7829 489 216 8 71 chr9 51796742 51796902 -66065725 - L1ME2 LINE L1 0 6162 6013 366 23 0 0 chr9 51798182 51798225 -66064402 + (CA)n Simple_repeat Simple_repeat 2 44 0 1655 175 7 0 chr9 51798560 51798852 -66063775 + AluJo SINE Alu 1 294 -18 749 242 45 6 chr9 51798937 51799115 -66063512 - MIR SINE MIR -70 192 8 1450 104 50 14 chr9 51799918 51800140 -66062487 + MER30 DNA MER1_type 1 230 0 2146 200 63 38 chr9 51800154 51800180 -66062447 + L1 LINE L1 4389 4413 -1733 1813 112 90 0 chr9 51800180 51800448 -66062179 - AluSg SINE Alu -18 292 1 2146 200 63 38 chr9 51800448 51801051 -66061576 + L1 LINE L1 4413 5034 -1112 581 210 90 72 chr9 51801067 51801234 -66061393 - FAM SINE Alu -2 173 4 597 293 45 32 chr9 51801527 51801841 -66060786 + L1MC4a LINE L1 1207 1524 -4899 2141 114 16 3 chr9 51801959 51802267 -66060360 - AluSq SINE Alu -1 312 1 455 256 87 62 chr9 51802286 51802641 -66059986 + L1MC4a LINE L1 1807 2170 -4952 824 166 70 27 chr9 51802642 51802829 -66059798 + L1MB5 LINE L1 5980 6174 0 * 978 249 11 30 chr9 51802815 51803084 -66059543 + L1MC4a LINE L1 6103 6366 -2237 1310 193 141 98 chr9 51803098 51803230 -66059397 + MLT1E LTR MaLR 1 126 -467 1397 204 39 25 chr9 51803230 51803509 -66059118 - AluJo SINE Alu -18 284 2 1310 193 141 98 chr9 51803509 51803888 -66058739 + MLT1E LTR MaLR 126 534 -59 227 139 0 0 chr9 51803892 51803928 -66058699 + L1MC4a LINE L1 6416 6451 -2152 2106 129 20 0 chr9 51804129 51804423 -66058204 - AluSx SINE Alu -10 302 3 1594 50 0 25 chr9 51804578 51804776 -66057851 + AluY SINE Alu 105 297 -14 23 68 0 0 chr9 51805205 51805249 -66057378 + AT_rich Low_complexity Low_complexity 1 44 0 883 249 23 85 chr9 51805249 51805564 -66057063 + L1MC4a LINE L1 6444 6726 -1877 1490 145 128 57 chr9 51805564 51805846 -66056781 + AluJo SINE Alu 1 302 0 883 249 23 85 chr9 51805846 51805964 -66056663 + L1MC4a LINE L1 6726 6850 -1753 688 255 99 25 chr9 51805993 51806275 -66056352 + L1MC4a LINE L1 7077 7379 -1224 419 223 0 69 chr9 51806404 51806534 -66056093 + L1MC4 LINE L1 8713 8833 -4 867 131 51 0 chr9 51806537 51806674 -66055953 + AluSq SINE Alu 131 274 -39 37 23 0 0 chr9 51806674 51806718 -66055909 + AT_rich Low_complexity Low_complexity 1 44 0 1309 194 109 44 chr9 51806961 51807346 -66055281 + Charlie4a DNA MER1_type 20 441 -1520 1895 147 7 0 chr9 51807346 51807673 -66054954 + AluSx SINE Alu 1 312 0 1309 194 109 44 chr9 51807673 51807746 -66054881 + Charlie4a DNA MER1_type 441 508 0 1749 166 3 10 chr9 51809916 51810206 -66052421 - AluSq SINE Alu -25 288 1 477 301 75 49 chr9 51810247 51810513 -66052114 + L1ME LINE L1 5442 5714 -456 2065 105 3 20 chr9 51810530 51810835 -66051792 + AluSx SINE Alu 5 304 -8 389 272 42 66 chr9 51811129 51811342 -66051285 - L1ME3A LINE L1 -1 6169 5962 2160 125 0 3 chr9 51811466 51811777 -66050850 + AluSg SINE Alu 1 310 0 828 215 70 110 chr9 51811782 51812164 -66050463 - L1MC5 LINE L1 -437 7524 7128 2517 65 0 7 chr9 51812164 51812471 -66050156 - AluY SINE Alu -6 305 1 828 215 70 110 chr9 51812471 51812484 -66050143 - L1MC5 LINE L1 -833 7128 7116 630 42 0 0 chr9 51812484 51812556 -66050071 - tRNA-Asp-GAC tRNA tRNA -3 72 1 2254 93 0 63 chr9 51812563 51812895 -66049732 - AluY SINE Alu 0 311 1 828 215 70 110 chr9 51812895 51812946 -66049681 - L1MC5 LINE L1 -851 7110 7087 2247 117 0 0 chr9 51812959 51813259 -66049368 - AluY SINE Alu -11 300 1 1918 111 82 4 chr9 51813324 51813604 -66049023 - AluSg SINE Alu -8 302 1 2284 58 0 4 chr9 51813619 51813918 -66048709 - AluY SINE Alu 0 304 7 1038 191 6 0 chr9 51813983 51814156 -66048471 - FAM SINE Alu -1 174 1 1811 230 129 23 chr9 51814216 51814703 -66047924 + MLT1F LTR MaLR 1 539 -3 229 222 0 0 chr9 51814743 51814788 -66047839 - L1MC4 LINE L1 -1054 6988 6944 333 346 43 37 chr9 51815769 51816149 -66046478 + L1ME3A LINE L1 5548 5929 -233 2087 108 4 0 chr9 51816832 51817109 -66045518 + AluSx SINE Alu 1 278 -34 430 113 97 0 chr9 51817211 51817273 -66045354 - AluS SINE Alu -242 70 3 1687 113 0 14 chr9 51817296 51817546 -66045081 + AluSx SINE Alu 64 310 0 2493 58 0 37 chr9 51818481 51818808 -66043819 + AluYb8 SINE Alu 4 318 0 1192 141 0 32 chr9 51818808 51818993 -66043634 + AluSg/x SINE Alu 134 312 0 3843 210 35 0 chr9 51819210 51819915 -66042712 + L1MA4 LINE L1 13 742 -6426 14268 185 36 80 chr9 51819938 51820882 -66041745 + L1MA4 LINE L1 1404 2388 -4933 974 139 0 0 chr9 51820882 51821011 -66041616 + FLAM_C SINE Alu 3 131 -2 14268 185 36 80 chr9 51821011 51821836 -66040791 + L1MA4 LINE L1 2388 3248 -4073 1751 189 3 0 chr9 51821836 51822121 -66040506 + AluJb SINE Alu 1 286 -26 14268 185 36 80 chr9 51822121 51822188 -66040439 + L1MA4 LINE L1 3248 3316 -4005 815 176 0 0 chr9 51822188 51822307 -66040320 + FLAM_A SINE Alu 1 119 -14 14268 185 36 80 chr9 51822307 51823093 -66039534 + L1MA4 LINE L1 3316 4135 -3186 1541 216 3 10 chr9 51823093 51823394 -66039233 + AluJo SINE Alu 1 299 -13 14268 185 36 80 chr9 51823394 51823517 -66039110 + L1MA4 LINE L1 4135 4262 -3059 2224 103 14 0 chr9 51823517 51823807 -66038820 + AluSp SINE Alu 3 296 -17 14268 185 36 80 chr9 51823807 51824337 -66038290 + L1MA4 LINE L1 4262 4814 -2507 2294 78 0 3 chr9 51824337 51824631 -66037996 - AluY SINE Alu -17 294 2 14268 185 36 80 chr9 51824631 51825363 -66037264 + L1MA4 LINE L1 4814 5577 -1744 806 174 0 7 chr9 51825363 51825501 -66037126 + AluJo SINE Alu 1 137 -175 14268 185 36 80 chr9 51825501 51826488 -66036139 + L1MA4 LINE L1 5577 6606 -715 1754 153 0 22 chr9 51826488 51826763 -66035864 + AluJo SINE Alu 13 281 -31 14268 185 36 80 chr9 51826763 51827125 -66035502 + L1MA4 LINE L1 6606 6982 -339 2117 107 0 29 chr9 51827125 51827434 -66035193 + AluSx SINE Alu 1 300 -12 14268 185 36 80 chr9 51827434 51827807 -66034820 + L1MA4 LINE L1 6982 7022 -299 2023 153 0 3 chr9 51827807 51828120 -66034507 + AluJb SINE Alu 1 312 0 14268 185 36 80 chr9 51828120 51828402 -66034225 + L1MA4 LINE L1 7022 7315 -6 288 0 0 0 chr9 51828483 51828515 -66034112 + (CA)n Simple_repeat Simple_repeat 1 32 0 199 167 0 0 chr9 51828550 51828586 -66034041 + L2 LINE L2 3263 3298 -15 1284 229 124 3 chr9 51828593 51828899 -66033728 + MER2 DNA MER2_type 1 343 -1 2265 105 0 19 chr9 51829053 51829367 -66033260 + AluSx SINE Alu 1 308 -4 2208 85 4 0 chr9 51829505 51829811 -66032816 - AluSq SINE Alu 0 307 1 24 0 0 0 chr9 51830090 51830114 -66032513 + AT_rich Low_complexity Low_complexity 1 24 0 488 233 67 0 chr9 51830601 51830721 -66031906 - MIR SINE MIR -2 260 133 2257 103 0 0 chr9 51832406 51832698 -66029929 - AluSx SINE Alu -16 296 5 1460 191 12 41 chr9 51832771 51833091 -66029536 + AluJb SINE Alu 2 312 0 282 253 179 105 chr9 51833345 51833507 -66029120 - MER5A DNA MER1_type -6 183 10 242 208 156 26 chr9 51833495 51833572 -66029055 + MIR SINE MIR 69 155 -107 * 1234 263 72 55 chr9 51833566 51834243 -66028384 + L2 LINE L2 2618 3307 -6 282 281 24 0 chr9 51834257 51834339 -66028288 + MIR SINE MIR 152 235 -27 974 259 58 63 chr9 51834371 51834784 -66027843 + L1ME3A LINE L1 5752 6162 -8 1038 284 81 54 chr9 51834788 51834898 -66027729 + HAL1 LINE L1 453 559 -1948 2226 116 3 0 chr9 51834898 51835200 -66027427 - AluY SINE Alu -8 303 1 1038 284 81 54 chr9 51835200 51835317 -66027310 + HAL1 LINE L1 559 671 -1836 2355 104 0 0 chr9 51835317 51835616 -66027011 + AluSq SINE Alu 1 299 -14 1038 284 81 54 chr9 51835616 51835721 -66026906 + HAL1 LINE L1 671 772 -1735 1578 142 7 52 chr9 51835721 51836009 -66026618 - AluSx SINE Alu 0 312 38 1038 284 81 54 chr9 51836009 51836121 -66026506 + HAL1 LINE L1 772 911 -1596 1520 133 96 19 chr9 51836146 51836530 -66026097 + L1MA9 LINE L1 5141 5556 -752 714 187 15 15 chr9 51836575 51836709 -66025918 - AluJo SINE Alu -177 135 2 411 184 0 41 chr9 51836710 51836808 -66025819 + L1MA9 LINE L1 5924 6017 -295 4274 154 48 84 chr9 51836808 51836914 -66025713 - MER21A LTR ERV1 0 931 823 288 0 0 0 chr9 51836914 51836946 -66025681 + (CAAG)n Simple_repeat Simple_repeat 4 35 0 4274 154 48 84 chr9 51836946 51837482 -66025145 - MER21A LTR ERV1 -108 823 332 2102 107 20 7 chr9 51837482 51837782 -66024845 + AluSq SINE Alu 1 304 -9 4274 154 48 84 chr9 51837782 51838093 -66024534 - MER21A LTR ERV1 -599 332 11 1736 183 7 3 chr9 51838135 51838420 -66024207 + AluJo SINE Alu 7 292 -20 22 0 0 0 chr9 51838420 51838442 -66024185 + AT_rich Low_complexity Low_complexity 1 22 0 2457 268 102 28 chr9 51838451 51839306 -66023321 + HAL1 LINE L1 1131 2096 -411 2763 98 25 5 chr9 51839306 51839674 -66022953 + THE1C LTR MaLR 1 375 0 2457 268 102 28 chr9 51839674 51839981 -66022646 + HAL1 LINE L1 2096 2379 -128 2468 76 0 0 chr9 51840034 51840335 -66022292 + AluSc SINE Alu 1 301 -8 2324 104 3 19 chr9 51840386 51840702 -66021925 + AluSx SINE Alu 1 311 -1 504 269 48 65 chr9 51840758 51841067 -66021560 + HAL1b LINE L1 1016 1319 -29 6150 159 28 14 chr9 51841182 51842628 -66019999 + L1PA16 LINE L1 4027 5451 -715 2318 75 7 10 chr9 51842628 51842923 -66019704 + AluSc SINE Alu 10 303 -6 1908 122 20 27 chr9 51842924 51843205 -66019422 + AluSx SINE Alu 1 281 -31 324 0 0 0 chr9 51843205 51843241 -66019386 + (CA)n Simple_repeat Simple_repeat 1 36 0 1908 122 20 27 chr9 51843241 51843253 -66019374 + AluSx SINE Alu 281 292 -20 6150 159 28 14 chr9 51843253 51843917 -66018710 + L1PA16 LINE L1 5450 6166 0 23 0 0 0 chr9 51844173 51844196 -66018431 + AT_rich Low_complexity Low_complexity 1 23 0 2024 102 32 11 chr9 51846822 51847107 -66015520 + AluSx SINE Alu 1 291 -21 1583 174 10 30 chr9 51847556 51847860 -66014767 + AluJo SINE Alu 5 302 -10 489 224 107 66 chr9 51847992 51848188 -66014439 - MER112 DNA MER1_type -50 210 7 25 0 0 0 chr9 51848210 51848235 -66014392 + AT_rich Low_complexity Low_complexity 1 25 0 288 303 8 8 chr9 51848374 51848493 -66014134 - L1M4 LINE L1 -2653 3493 3375 1018 261 92 43 chr9 51848740 51848834 -66013793 - L1M4 LINE L1 -2365 3781 3693 2128 114 3 29 chr9 51848834 51849150 -66013477 - AluSg SINE Alu -2 308 1 1018 261 92 43 chr9 51849150 51849469 -66013158 - L1M4 LINE L1 -2453 3693 3348 * 1231 269 63 47 chr9 51849468 51850089 -66012538 - L1MDb LINE L1 -5000 1543 913 264 298 43 68 chr9 51850299 51850460 -66012167 - L1MDb LINE L1 -6193 347 191 255 31 0 0 chr9 51850566 51850598 -66012029 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2127 128 3 0 chr9 51850600 51850897 -66011730 - AluSx SINE Alu -14 298 1 466 270 104 62 chr9 51850961 51851097 -66011530 - L1ME4a LINE L1 -236 5885 5756 1836 160 0 19 chr9 51851097 51851409 -66011218 - AluJo SINE Alu -6 306 1 466 270 104 62 chr9 51851409 51851531 -66011096 - L1ME4a LINE L1 -365 5756 5616 1298 195 58 8 chr9 51851543 51851804 -66010823 + AluJo SINE Alu 1 274 -38 1801 230 31 67 chr9 51851863 51852243 -66010384 - MLT1E3 LTR MaLR -133 491 132 2724 108 70 5 chr9 51852243 51852641 -66009986 - MSTA LTR MaLR -4 424 1 1801 230 31 67 chr9 51852641 51852769 -66009858 - MLT1E3 LTR MaLR -492 132 1 665 173 126 42 chr9 51853268 51853434 -66009193 + L1MC4a LINE L1 6853 7042 -766 3986 115 11 2 chr9 51853434 51853956 -66008671 + MER1A DNA MER1_type 1 527 0 665 173 126 42 chr9 51853956 51854003 -66008624 + L1MC4a LINE L1 7042 7084 -724 * 1074 144 29 0 chr9 51854002 51854175 -66008452 - L1PA13 LINE L1 -132 6031 5854 790 117 39 23 chr9 51854176 51854304 -66008323 + L1PA12 LINE L1 6038 6167 -1 1733 191 0 0 chr9 51854343 51854641 -66007986 - AluSx SINE Alu -14 298 1 593 200 36 36 chr9 51854641 51854806 -66007821 + MER69 DNA AcHobo 2177 2341 -185 1310 204 65 109 chr9 51854810 51855512 -66007115 + L1MD3 LINE L1 7072 7916 -79 321 216 54 0 chr9 51855644 51855718 -66006909 + Tigger5 DNA MER2_type 2 79 -2244 412 115 0 0 chr9 51855724 51855785 -66006842 - Tigger5 DNA MER2_type -13 2310 2250 325 262 28 37 chr9 51855873 51855980 -66006647 + MIR SINE MIR 157 262 0 * 492 256 0 23 chr9 51855946 51856075 -66006552 - MIR SINE MIR -86 176 51 404 227 21 92 chr9 51856502 51856643 -66005984 + MER5B DNA MER1_type 4 134 -44 272 163 20 0 chr9 51858121 51858170 -66004457 - Charlie5 DNA MER1_type -2562 50 1 258 278 0 72 chr9 51858377 51858474 -66004153 + MIR SINE MIR 3 92 -170 614 151 94 0 chr9 51858627 51858733 -66003894 + FLAM_C SINE Alu 1 116 -17 1160 146 214 0 chr9 51859263 51859483 -66003144 + AluJb SINE Alu 10 276 -36 189 267 0 0 chr9 51860031 51860076 -66002551 + L3 LINE CR1 344 388 -1189 782 180 131 0 chr9 51860254 51860499 -66002128 - MER33 DNA MER1_type -4 320 44 2048 142 3 0 chr9 51860654 51860965 -66001662 - AluSx SINE Alu 0 312 1 351 296 72 116 chr9 51861632 51862383 -66000244 - L1M2 LINE L1 -5617 1232 405 1412 137 8 8 chr9 51862604 51862838 -65999789 + AluJb SINE Alu 75 308 -4 782 220 6 0 chr9 51863294 51863467 -65999160 - AluJb SINE Alu -1 311 138 1689 140 60 7 chr9 51863786 51864071 -65998556 + AluJb SINE Alu 1 300 -12 1799 189 3 7 chr9 51864514 51864815 -65997812 - AluJb SINE Alu -12 300 1 1288 164 10 0 chr9 51864822 51865029 -65997598 - AluJb SINE Alu -24 288 80 361 185 148 0 chr9 51865050 51865158 -65997469 - L1MA10 LINE L1 -1 6333 6210 420 245 108 32 chr9 51865266 51865515 -65997112 - L1MEc LINE L1 -1537 4678 4411 681 228 31 47 chr9 51865642 51865762 -65996865 - L1MEc LINE L1 -2987 3228 3108 2061 106 35 0 chr9 51865762 51866044 -65996583 - AluSx SINE Alu -20 292 1 681 228 31 47 chr9 51866044 51866177 -65996450 - L1MEc LINE L1 -3107 3108 2979 329 256 32 16 chr9 51866242 51866367 -65996260 - L1MEc LINE L1 -4295 2101 1975 626 294 64 17 chr9 51866703 51866999 -65995628 + L2 LINE L2 3004 3313 0 380 211 221 47 chr9 51867123 51867313 -65995314 - L2 LINE L2 0 3313 3091 221 0 0 33 chr9 51867446 51867476 -65995151 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1811 241 97 29 chr9 51867488 51868240 -65994387 - L1MEc LINE L1 -5225 1171 369 360 286 65 68 chr9 51868251 51868369 -65994258 + L1MC/D LINE L1 5454 5571 -2237 2207 96 3 16 chr9 51868369 51868672 -65993955 + AluSq SINE Alu 1 299 -14 360 286 65 68 chr9 51868672 51868847 -65993780 + L1MC/D LINE L1 5571 5746 -2062 25 65 0 0 chr9 51868869 51868915 -65993712 + AT_rich Low_complexity Low_complexity 1 46 0 2342 93 3 7 chr9 51868938 51869240 -65993387 - AluSx SINE Alu -11 301 1 675 158 0 0 chr9 51869341 51869455 -65993172 - Tigger1 DNA MER2_type -1 2417 2304 1785 135 7 54 chr9 51869457 51869781 -65992846 + AluSx SINE Alu 1 310 0 1135 142 0 0 chr9 51869781 51869943 -65992684 + AluJb SINE Alu 133 294 -18 2703 159 68 0 chr9 51869943 51870470 -65992157 - Tigger1 DNA MER2_type -109 2309 1747 1969 273 95 37 chr9 51870470 51871740 -65990887 + L1MCc LINE L1 372 1741 -5064 2127 132 0 0 chr9 51871740 51872051 -65990576 + AluSq SINE Alu 1 311 -2 1969 273 95 37 chr9 51872051 51872241 -65990386 + L1MCc LINE L1 1741 1918 -4887 441 246 117 6 chr9 51872339 51872510 -65990117 + L1MCc LINE L1 2316 2505 -4617 1230 210 101 6 chr9 51872510 51872996 -65989631 - MLT1F LTR MaLR -12 530 1 1184 169 154 22 chr9 51873054 51873462 -65989165 + L1MCc LINE L1 2591 3052 -4070 2766 143 11 7 chr9 51873464 51873911 -65988716 + L1MA4A LINE L1 6 454 -6395 * 10344 173 48 17 chr9 51873901 51876463 -65986164 + L1MA4A LINE L1 855 3336 -3512 2443 87 0 3 chr9 51876463 51876775 -65985852 + AluSx SINE Alu 1 311 -1 10344 173 48 17 chr9 51876775 51876886 -65985741 + L1MA4A LINE L1 3336 3442 -3406 1751 181 7 0 chr9 51876886 51877173 -65985454 - AluJb SINE Alu -23 289 1 10344 173 48 17 chr9 51877173 51877216 -65985411 + L1MA4A LINE L1 3442 3482 -3366 1450 189 74 11 chr9 51877216 51877486 -65985141 + AluJo SINE Alu 1 287 -25 10344 173 48 17 chr9 51877486 51877677 -65984950 + L1MA4A LINE L1 3482 3854 -2994 718 167 16 0 chr9 51877696 51877822 -65984805 + FLAM_A SINE Alu 5 132 -1 5436 140 29 38 chr9 51877830 51879857 -65982770 + L1PB2 LINE L1 4131 6151 0 * 6124 161 21 84 chr9 51879835 51880379 -65982248 + L1MA4A LINE L1 3882 4459 -2389 1832 107 69 4 chr9 51880379 51880664 -65981963 + AluSc SINE Alu 1 302 0 6124 161 21 84 chr9 51880664 51881355 -65981272 + L1MA4A LINE L1 4459 4991 -1857 873 119 0 0 chr9 51881355 51881473 -65981154 - FLAM_C SINE Alu -15 118 1 6124 161 21 84 chr9 51881473 51881879 -65980748 + L1MA4A LINE L1 4991 5421 -1427 4368 52 31 2 chr9 51881876 51882496 -65980131 - L1P LINE L1 -2868 3278 2641 * 490 106 138 0 chr9 51882494 51882588 -65980039 + L1MA4A LINE L1 6037 6143 -862 * 2034 97 7 17 chr9 51882589 51882878 -65979749 + AluSg SINE Alu 1 286 -24 30 83 0 0 chr9 51882878 51882950 -65979677 + AT_rich Low_complexity Low_complexity 1 72 0 356 189 33 39 chr9 51882965 51883145 -65979482 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 4741 121 53 13 chr9 51883841 51884677 -65977950 + L1MA4A LINE L1 6131 6999 -6 301 205 77 0 chr9 51884680 51884758 -65977869 + L1MEc LINE L1 2312 2395 -4001 631 198 51 28 chr9 51884761 51884938 -65977689 + L1MD3 LINE L1 7768 7948 -47 390 168 36 9 chr9 51884938 51885025 -65977602 + LTR40b LTR ERVL 368 465 0 633 276 62 0 chr9 51885268 51885478 -65977149 + HERVL40 LTR ERVL 924 1146 -4384 5516 159 84 28 chr9 51885606 51886078 -65976549 - Ricksha_b DNA DNA -1613 1241 797 2106 139 10 0 chr9 51886078 51886387 -65976240 + AluSx SINE Alu 1 312 0 5516 159 84 28 chr9 51886387 51886402 -65976225 - Ricksha_b DNA DNA -2057 797 784 2242 114 3 0 chr9 51886402 51886709 -65975918 + AluSx SINE Alu 1 308 -4 5516 159 84 28 chr9 51886709 51887425 -65975202 - Ricksha_b DNA DNA -2070 784 26 771 153 62 0 chr9 51887579 51887723 -65974904 - Ricksha DNA DNA -156 3095 2943 317 152 106 0 chr9 51887972 51888038 -65974589 - MER76 LTR ERV -85 603 531 2062 261 50 15 chr9 51888381 51888982 -65973645 + HERVL40 LTR ERVL 2694 3315 -2215 1067 126 96 5 chr9 51889050 51889249 -65973378 - Tigger1 DNA MER2_type 0 2418 2202 779 129 6 124 chr9 51889238 51889416 -65973211 - Tigger1 DNA MER2_type -2261 157 1 * 238 325 102 20 chr9 51889417 51889614 -65973013 + L1ME LINE L1 5463 5675 -446 297 252 146 33 chr9 51889882 51890033 -65972594 - MIR SINE MIR -11 251 84 1109 139 0 35 chr9 51892466 51892638 -65969989 + FRAM SINE Alu 1 166 -10 402 221 327 50 chr9 51893291 51893490 -65969137 - MIR SINE MIR -7 255 2 206 305 94 31 chr9 51893744 51893838 -65968789 - MIR SINE MIR -8 254 148 1647 139 146 3 chr9 51893838 51894154 -65968473 + MER46B DNA MER2_type 1 236 0 206 305 94 31 chr9 51894154 51894187 -65968440 - MIR SINE MIR -114 148 119 217 219 16 78 chr9 51894876 51894940 -65967687 + MIR SINE MIR 52 112 -96 2063 117 7 14 chr9 51894954 51895244 -65967383 - AluSx SINE Alu -17 295 8 201 271 47 47 chr9 51895571 51895656 -65966971 - L2 LINE L2 -42 3271 3187 2255 207 51 21 chr9 51896557 51897165 -65965462 + L1ME1 LINE L1 5538 6163 -3 300 259 181 0 chr9 51897185 51897301 -65965326 - L1MC/D LINE L1 -2310 5498 5362 238 274 131 12 chr9 51897303 51897387 -65965240 - L2 LINE L2 -3 3269 3176 24 32 0 0 chr9 51897430 51897461 -65965166 + AT_rich Low_complexity Low_complexity 1 31 0 775 200 0 0 chr9 51897462 51897587 -65965040 - FLAM_A SINE Alu -8 125 1 245 215 131 19 chr9 51897692 51897799 -65964828 - L1ME4a LINE L1 -74 6047 5929 512 268 101 0 chr9 51898038 51898217 -65964410 - MER58C DNA MER1_type -18 197 1 326 390 81 5 chr9 51898254 51898464 -65964163 - L1ME4a LINE L1 -2212 5596 5371 1485 215 0 17 chr9 51898473 51898775 -65963852 - AluJo SINE Alu -4 308 12 739 161 105 12 chr9 51898903 51899065 -65963562 + THE1C LTR MaLR 1 177 -198 436 283 87 46 chr9 51899065 51899284 -65963343 + L1MEd LINE L1 608 835 -5284 256 255 35 23 chr9 51899293 51899463 -65963164 + L1MEd LINE L1 1014 1186 -4933 272 284 140 12 chr9 51899519 51899762 -65962865 + L1MEd LINE L1 1220 1493 -4817 229 250 0 0 chr9 51899791 51899859 -65962768 + L1MC4a LINE L1 6551 6618 -1190 864 217 127 30 chr9 51899942 51900209 -65962418 + L1MC4 LINE L1 6695 6987 -1055 278 241 45 36 chr9 51900242 51900354 -65962273 + L1MEd LINE L1 2145 2257 -3872 2396 87 3 0 chr9 51900511 51900811 -65961816 - AluSc SINE Alu -8 301 1 2280 112 0 0 chr9 51901361 51901664 -65960963 + AluSx SINE Alu 1 303 -9 277 246 159 40 chr9 51902423 51902549 -65960078 - L2 LINE L2 0 3313 3173 194 348 52 52 chr9 51902808 51902943 -65959684 - L2 LINE L2 -571 2743 2609 708 154 73 133 chr9 51902979 51903212 -65959415 + MER20 DNA MER1_type 1 219 0 1173 187 59 100 chr9 51903314 51903704 -65958923 + MLT1B LTR MaLR 15 388 -2 240 322 72 50 chr9 51903894 51904074 -65958553 - L2 LINE L2 -1022 2292 2109 284 291 137 46 chr9 51904595 51904770 -65957857 + MIR SINE MIR 48 238 -24 23 0 0 0 chr9 51906732 51906755 -65955872 + AT_rich Low_complexity Low_complexity 1 23 0 708 254 149 60 chr9 51906765 51907311 -65955316 + L2 LINE L2 2720 3311 -2 824 140 73 18 chr9 51911786 51911950 -65950677 + MER33 DNA MER1_type 8 180 -144 246 200 20 0 chr9 51911990 51912040 -65950587 + MER66B LTR ERV1 295 345 -141 22 0 0 0 chr9 51912041 51912063 -65950564 + AT_rich Low_complexity Low_complexity 1 22 0 1935 139 17 10 chr9 51912123 51912418 -65950209 - AluJb SINE Alu -15 297 1 852 234 76 0 chr9 51912750 51912947 -65949680 + MER58A DNA MER1_type 13 224 0 332 240 77 0 chr9 51913003 51913107 -65949520 - L1MC/D LINE L1 -2014 5794 5683 204 40 0 0 chr9 51913245 51913270 -65949357 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 2190 99 3 0 chr9 51913273 51913555 -65949072 - AluSx SINE Alu -29 283 1 412 269 124 21 chr9 51913558 51913751 -65948876 - L1MC/D LINE L1 -2199 5609 5397 2524 47 7 3 chr9 51914856 51915152 -65947475 - AluY SINE Alu -13 298 2 423 0 0 0 chr9 51915208 51915255 -65947372 + (CA)n Simple_repeat Simple_repeat 2 48 0 2092 120 23 3 chr9 51915432 51915732 -65946895 - AluSx SINE Alu -6 306 1 28 0 0 0 chr9 51916124 51916152 -65946475 + AT_rich Low_complexity Low_complexity 1 28 0 1407 229 229 21 chr9 51916614 51916825 -65945802 + L1M4 LINE L1 3763 3929 -2217 2353 109 0 0 chr9 51916825 51917137 -65945490 + AluSx SINE Alu 1 312 0 1407 229 229 21 chr9 51917137 51917453 -65945174 + L1M4 LINE L1 3929 4400 -1746 1481 93 51 9 chr9 51917455 51917671 -65944956 + MER30 DNA MER1_type 1 225 -5 1894 212 93 47 chr9 51917771 51918308 -65944319 + MER4D LTR ERV1 342 903 0 2431 85 0 3 chr9 51918640 51918947 -65943680 - AluSc SINE Alu -3 306 1 270 381 24 8 chr9 51919237 51919363 -65943264 + MIR SINE MIR 26 153 -109 525 66 13 79 chr9 51919618 51919869 -65942758 + (TA)n Simple_repeat Simple_repeat 1 234 0 1615 180 0 26 chr9 51920038 51920343 -65942284 + AluJo SINE Alu 9 305 -7 272 104 0 21 chr9 51920376 51920424 -65942203 - L1MA7 LINE L1 -11 6280 6234 308 298 135 40 chr9 51920428 51920595 -65942032 - L1ME LINE L1 -321 5800 5600 2132 152 0 0 chr9 51920595 51920905 -65941722 - AluSx SINE Alu -2 310 1 308 298 135 40 chr9 51920905 51920989 -65941638 - L1ME LINE L1 -521 5600 5525 2287 93 19 22 chr9 51921234 51921545 -65941082 + AluSx SINE Alu 1 310 -2 604 221 55 33 chr9 51922087 51922268 -65940359 + MER58A DNA MER1_type 37 221 -3 313 269 21 32 chr9 51922697 51922790 -65939837 + MIR SINE MIR 50 141 -67 1279 156 84 0 chr9 51923154 51923392 -65939235 - Tigger2 DNA MER2_type 0 2718 2461 3914 127 106 1 chr9 51923469 51924138 -65938489 - Tigger2 DNA MER2_type -1979 739 1 905 211 5 11 chr9 51924164 51924354 -65938273 + MER3 DNA MER1_type 7 195 -14 231 329 53 0 chr9 51925265 51925341 -65937286 - L2 LINE L2 -50 3222 3143 203 147 0 0 chr9 51926472 51926506 -65936121 + (CCG)n Simple_repeat Simple_repeat 1 34 0 2183 77 32 0 chr9 51927256 51927541 -65935086 - AluSx SINE Alu -18 294 1 2341 75 20 0 chr9 51927706 51928011 -65934616 + AluY SINE Alu 1 311 0 1851 94 24 42 chr9 51928328 51928615 -65934012 - AluSx SINE Alu -30 282 1 285 320 154 6 chr9 51929169 51929344 -65933283 - MIR SINE MIR -5 257 57 1745 169 3 46 chr9 51929531 51929856 -65932771 - AluJo SINE Alu 0 312 2 280 225 191 0 chr9 51929880 51929969 -65932658 + MIR SINE MIR 152 257 -5 2111 155 58 29 chr9 51930237 51930291 -65932336 + L1MD2 LINE L1 5525 5576 -783 3090 164 21 13 chr9 51930291 51930759 -65931868 - MER70A LTR ERVL 0 472 1 2111 155 58 29 chr9 51930759 51931085 -65931542 + L1MD2 LINE L1 5576 5916 -443 1240 191 8 8 chr9 51931088 51931340 -65931287 - AluJo SINE Alu -1 311 60 1012 218 43 0 chr9 51931340 51931551 -65931076 + L1MD2 LINE L1 5911 6130 -229 32 0 0 0 chr9 51931598 51931630 -65930997 + AT_rich Low_complexity Low_complexity 1 32 0 345 282 35 0 chr9 51932019 51932104 -65930523 + L2 LINE L2 3138 3225 -47 251 290 0 0 chr9 51932325 51932387 -65930240 - MIR SINE MIR -155 107 46 348 64 0 0 chr9 51933507 51933554 -65929073 + (TATG)n Simple_repeat Simple_repeat 2 48 0 1781 172 0 3 chr9 51933554 51933839 -65928788 - AluJb SINE Alu -28 284 1 416 224 231 8 chr9 51934302 51934436 -65928191 + MER5A DNA MER1_type 26 189 0 2408 65 10 10 chr9 51934500 51934806 -65927821 + AluY SINE Alu 1 306 -5 1299 170 159 15 chr9 51934810 51935080 -65927547 + AluJo SINE Alu 1 309 -3 617 284 17 81 chr9 51935840 51935863 -65926764 - MER58A DNA MER1_type -2196 224 201 3881 121 8 8 chr9 51935863 51936390 -65926237 + MER1A DNA MER1_type 1 527 0 617 284 17 81 chr9 51936390 51936529 -65926098 - MER58A DNA MER1_type -2219 201 79 1783 169 7 7 chr9 51936529 51936824 -65925803 - AluJb SINE Alu -17 295 1 617 284 17 81 chr9 51936824 51936896 -65925731 - MER58A DNA MER1_type -2341 79 4 1400 225 22 6 chr9 51937845 51938156 -65924471 + MER74A LTR ERVL 15 330 -228 396 167 0 0 chr9 51938185 51938257 -65924370 + C-rich Low_complexity Low_complexity 3 74 0 1252 183 12 8 chr9 51938257 51938497 -65924130 + MER74A LTR ERVL 318 558 0 410 222 141 52 chr9 51938976 51939111 -65923516 - MLT1K LTR MaLR -37 551 405 740 307 64 19 chr9 51939123 51939387 -65923240 - MLT1K LTR MaLR -304 284 9 1450 218 25 4 chr9 51940060 51940367 -65922260 + AluJo SINE Alu 1 313 0 2476 67 7 0 chr9 51940517 51940815 -65921812 - AluSp SINE Alu -13 300 1 2242 121 0 0 chr9 51940820 51941125 -65921502 - AluSx SINE Alu -7 305 1 351 0 0 0 chr9 51941197 51941236 -65921391 + (TG)n Simple_repeat Simple_repeat 2 40 0 1408 152 122 26 chr9 51941276 51941546 -65921081 - AluJb SINE Alu -16 296 1 2471 84 0 6 chr9 51941594 51941905 -65920722 + AluSc SINE Alu 1 309 0 1926 148 0 0 chr9 51941920 51942191 -65920436 + AluSx SINE Alu 1 271 -41 359 335 56 17 chr9 51942689 51942868 -65919759 - MIR SINE MIR 0 262 77 343 268 72 0 chr9 51942960 51943057 -65919570 - MLT1J LTR MaLR -407 104 1 228 122 0 0 chr9 51943310 51943351 -65919276 + (TC)n Simple_repeat Simple_repeat 1 41 0 1962 231 53 2 chr9 51943426 51943880 -65918747 - L1MD3 LINE L1 -19 7976 7500 452 352 37 40 chr9 51943892 51944190 -65918437 - L2 LINE L2 -575 2739 2443 1391 37 0 0 chr9 51944488 51944649 -65917978 + AluY SINE Alu 151 311 0 423 0 0 0 chr9 51944654 51944701 -65917926 + (TA)n Simple_repeat Simple_repeat 1 47 0 375 262 0 19 chr9 51945081 51945184 -65917443 - MER5B DNA MER1_type -1 177 77 1619 228 38 8 chr9 51945260 51945628 -65916999 - MLT1F LTR MaLR 0 542 164 22 0 0 0 chr9 51945805 51945827 -65916800 + AT_rich Low_complexity Low_complexity 1 22 0 327 267 154 34 chr9 51946071 51946290 -65916337 - MIR SINE MIR -16 246 8 2497 150 67 25 chr9 51946409 51946516 -65916111 - LTR47A LTR ERVL 0 452 351 2437 78 3 3 chr9 51946516 51946823 -65915804 + AluSq SINE Alu 1 307 -6 2497 150 67 25 chr9 51946823 51947149 -65915478 - LTR47A LTR ERVL -101 351 1 228 255 204 0 chr9 51947312 51947410 -65915217 + MIR SINE MIR 57 174 -88 2111 125 7 0 chr9 51947665 51947961 -65914666 + AluSq SINE Alu 1 298 -15 3128 109 47 5 chr9 51948253 51948683 -65913944 + MER83 LTR ERV1 1 448 0 664 181 105 0 chr9 51948745 51948878 -65913749 + MIR SINE MIR 2 148 -114 372 80 0 0 chr9 51948891 51948997 -65913630 - Alu SINE Alu 0 338 233 320 269 43 0 chr9 51948997 51949090 -65913537 + MIR SINE MIR 163 259 -3 2296 110 7 0 chr9 51949201 51949511 -65913116 + AluSx SINE Alu 1 312 0 384 286 16 16 chr9 51949997 51950123 -65912504 + MIR SINE MIR 1 126 -136 923 212 81 123 chr9 51950163 51950454 -65912173 - LTR37B LTR ERV1 0 468 203 1396 146 9 49 chr9 51950454 51950680 -65911947 + MER20 DNA MER1_type 1 217 -2 923 212 81 123 chr9 51950680 51950860 -65911767 - LTR37B LTR ERV1 -265 203 17 2147 125 3 10 chr9 51950863 51951174 -65911453 - AluSx SINE Alu -3 309 1 270 281 0 0 chr9 51951199 51951256 -65911371 + MIR SINE MIR 206 262 0 329 153 34 38 chr9 51951807 51951885 -65910742 - LTR41 LTR ERVL 0 795 707 2201 110 0 3 chr9 51951888 51952180 -65910447 + AluSx SINE Alu 1 291 -21 1394 225 278 8 chr9 51952189 51952660 -65909967 - LTR41 LTR ERVL -175 598 1 1055 201 0 5 chr9 51952787 51952971 -65909656 + MER5A DNA MER1_type 7 189 0 1767 163 20 10 chr9 51953051 51953352 -65909275 - AluJo SINE Alu 0 312 9 863 167 0 0 chr9 51953369 51953501 -65909126 - AluJb SINE Alu -6 306 175 359 158 18 0 chr9 51953783 51953840 -65908787 - MLT1G LTR MaLR -414 176 119 2112 127 7 0 chr9 51953844 51954143 -65908484 - AluSx SINE Alu -11 301 1 3967 105 0 4 chr9 51954437 51954950 -65907677 + MER9 LTR ERVK 1 511 0 283 186 57 43 chr9 51955909 51955979 -65906648 + MLT1J2 LTR MaLR 69 139 -311 1806 124 56 0 chr9 51956332 51956599 -65906028 + AluSc SINE Alu 1 282 -27 13180 59 1 1 chr9 51956597 51958945 -65903682 + L1PA6 LINE L1 3797 6149 -5 342 0 0 0 chr9 51959240 51959278 -65903349 + (CA)n Simple_repeat Simple_repeat 2 39 0 210 174 0 0 chr9 51959517 51959563 -65903064 + (CA)n Simple_repeat Simple_repeat 1 46 0 230 328 0 0 chr9 51959577 51959644 -65902983 - MER112 DNA MER1_type -193 67 1 312 269 52 67 chr9 51960385 51960653 -65901974 + L1ME LINE L1 5520 5783 -338 273 238 123 103 chr9 51960696 51960948 -65901679 - Charlie8 DNA MER1_type -162 2255 1999 1953 134 11 0 chr9 51961129 51961405 -65901222 + AluSx SINE Alu 1 279 -33 2352 89 20 7 chr9 51961408 51961712 -65900915 + AluY SINE Alu 1 308 -3 190 50 50 25 chr9 51961725 51961765 -65900862 + (TAAAAA)n Simple_repeat Simple_repeat 2 42 0 1486 181 9 69 chr9 51963379 51963546 -65899081 - AluJo SINE Alu -11 301 160 2090 113 3 13 chr9 51963546 51963846 -65898781 - AluSc SINE Alu -10 299 3 1486 181 9 69 chr9 51963846 51963998 -65898629 - AluJo SINE Alu -152 160 1 478 198 31 10 chr9 51964047 51964143 -65898484 + MLT1K LTR MaLR 145 242 -346 366 208 40 20 chr9 51964182 51964283 -65898344 - L1MC5 LINE L1 -38 7923 7821 322 260 153 56 chr9 51964288 51964441 -65898186 + MLT1K LTR MaLR 279 456 -132 846 102 87 0 chr9 51964441 51964568 -65898059 + MER85 DNA T2_type 1 138 -1 322 260 153 56 chr9 51964568 51964610 -65898017 + MLT1K LTR MaLR 456 493 -95 214 71 24 24 chr9 51965471 51965513 -65897114 + (GAAA)n Simple_repeat Simple_repeat 4 45 0 227 304 0 29 chr9 51965576 51965645 -65896982 - MER5B DNA MER1_type -1 177 111 202 233 14 41 chr9 51965599 51965672 -65896955 + MER5A DNA MER1_type 36 106 -83 * 279 54 0 0 chr9 51965697 51965734 -65896893 + (TG)n Simple_repeat Simple_repeat 2 38 0 269 271 113 46 chr9 51965777 51965928 -65896699 - L2 LINE L2 -250 3022 2862 314 338 90 64 chr9 51966593 51967189 -65895438 + L2 LINE L2 2660 3270 -2 354 294 67 0 chr9 51968609 51968728 -65893899 - L1MC5 LINE L1 -35 7926 7800 580 181 11 0 chr9 51968991 51969085 -65893542 + MER5A DNA MER1_type 7 101 -88 626 294 14 18 chr9 51969103 51969385 -65893242 - L1MDa LINE L1 -2626 3914 3634 * 2803 244 211 30 chr9 51969380 51970779 -65891848 - L1MDa LINE L1 -4880 1660 9 328 204 78 0 chr9 51970767 51970870 -65891757 - L1MEc LINE L1 -3171 3044 2934 * 609 258 6 22 chr9 51970871 51971049 -65891578 + L1MC5 LINE L1 7739 7913 -48 1089 258 85 57 chr9 51971076 51971374 -65891253 - L1MEc LINE L1 -3267 2948 2660 2463 155 81 0 chr9 51971374 51971806 -65890821 + MLT1C LTR MaLR 1 467 0 1089 258 85 57 chr9 51971806 51971837 -65890790 - L1MEc LINE L1 -3555 2660 2631 2016 149 3 0 chr9 51971837 51972146 -65890481 + AluSx SINE Alu 1 310 -2 1089 258 85 57 chr9 51972146 51972427 -65890200 - L1MEc LINE L1 -3584 2631 2320 1128 156 0 0 chr9 51972434 51972601 -65890026 - AluSg/x SINE Alu -9 301 135 337 194 94 69 chr9 51972653 51972768 -65889859 - L1MEc LINE L1 -4088 2308 2186 1904 151 10 3 chr9 51972768 51973067 -65889560 - AluJb SINE Alu -11 301 1 337 194 94 69 chr9 51973067 51973111 -65889516 - L1MEc LINE L1 -4210 2186 2145 440 291 113 59 chr9 51973244 51973638 -65888989 - L1MC/D LINE L1 -462 5659 5255 3280 140 6 6 chr9 51974321 51974835 -65887792 + L1MA4 LINE L1 5508 6021 -279 330 188 38 0 chr9 51974843 51974923 -65887704 + L1MB3 LINE L1 6099 6181 -2 22 35 0 0 chr9 51974954 51974983 -65887644 + AT_rich Low_complexity Low_complexity 1 29 0 1715 169 3 14 chr9 51974983 51975273 -65887354 - AluJb SINE Alu -25 287 1 2043 118 24 0 chr9 51976019 51976308 -65886319 - AluSx SINE Alu -16 296 1 1843 214 67 19 chr9 51976942 51977405 -65885222 + Charlie4a DNA MER1_type 8 492 -16 212 200 73 0 chr9 51978512 51978567 -65884060 - MIR SINE MIR -98 164 106 2453 139 24 33 chr9 51978702 51978749 -65883878 + MSTB LTR MaLR 8 54 -372 2276 94 14 0 chr9 51978749 51979037 -65883590 + AluSx SINE Alu 1 292 -20 2453 139 24 33 chr9 51979037 51979412 -65883215 + MSTB LTR MaLR 54 426 0 885 177 0 0 chr9 51979690 51979820 -65882807 + FLAM_C SINE Alu 1 130 -3 353 314 169 30 chr9 51980054 51980426 -65882201 + MLT1K LTR MaLR 109 532 -56 1088 158 123 8 chr9 51982118 51982378 -65880249 - MER58 DNA MER1_type -8 2412 2123 1772 174 0 3 chr9 51982886 51983185 -65879442 + AluJb SINE Alu 1 298 -14 458 280 28 21 chr9 51983572 51983735 -65878892 - MIR3 SINE MIR -8 200 37 243 0 0 0 chr9 51984106 51984133 -65878494 + (T)n Simple_repeat Simple_repeat 1 27 0 517 206 0 0 chr9 51984472 51984569 -65878058 + AluJ/FRAM SINE Alu 215 311 -1 2225 82 0 4 chr9 51985288 51985568 -65877059 - AluSc SINE Alu -14 295 17 1284 182 94 21 chr9 51985764 51986050 -65876577 - MER58B DNA MER1_type 0 341 35 225 0 0 0 chr9 51986596 51986621 -65876006 + (CGGGG)n Simple_repeat Simple_repeat 5 29 0 23 0 0 0 chr9 51986867 51986890 -65875737 + GC_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr9 51987309 51987334 -65875293 + AT_rich Low_complexity Low_complexity 1 25 0 324 0 0 0 chr9 51988674 51988710 -65873917 + (TG)n Simple_repeat Simple_repeat 2 37 0 189 74 0 0 chr9 51988861 51988888 -65873739 + (TTTTA)n Simple_repeat Simple_repeat 5 31 0 834 153 15 0 chr9 51989070 51989201 -65873426 + FLAM_C SINE Alu 1 133 -10 806 209 15 127 chr9 51989237 51989461 -65873166 - MIR SINE MIR -23 239 48 1910 67 56 26 chr9 51989461 51989730 -65872897 - AluSg1 SINE Alu -8 301 25 806 209 15 127 chr9 51989730 51989773 -65872854 - MIR SINE MIR -214 48 2 300 298 108 63 chr9 51990719 51990877 -65871750 - L2 LINE L2 0 3272 3108 28 86 0 0 chr9 51990941 51991011 -65871616 + AT_rich Low_complexity Low_complexity 1 70 0 665 228 0 22 chr9 51991404 51991576 -65871051 - FLAM_A SINE Alu 0 169 1 435 345 57 26 chr9 51992266 51992495 -65870132 - MIR SINE MIR -3 259 24 1781 148 57 7 chr9 51993141 51993424 -65869203 + AluJb SINE Alu 1 297 -15 832 291 107 3 chr9 51993437 51993736 -65868891 - L1MC4a LINE L1 -1962 5846 5517 199 360 9 35 chr9 51993815 51993929 -65868698 - L2 LINE L2 -209 3063 2953 2477 44 0 3 chr9 51994276 51994569 -65868058 - AluY SINE Alu -17 294 3 583 116 105 0 chr9 51995787 51995882 -65866745 + MER4D LTR ERV1 1 105 -798 218 328 15 0 chr9 51996165 51996232 -65866395 + MIR SINE MIR 57 124 -84 1138 178 18 22 chr9 51996232 51996457 -65866170 - AluJb SINE Alu -8 304 81 2110 117 0 10 chr9 51997301 51997601 -65865026 - AluSq SINE Alu 0 313 17 1283 150 54 86 chr9 51997644 51997924 -65864703 - AluJo SINE Alu -15 297 27 2190 112 0 3 chr9 51997925 51998221 -65864406 + AluSx SINE Alu 1 295 -17 2294 94 3 3 chr9 51998827 51999126 -65863501 + AluSx SINE Alu 1 299 -13 25 0 0 0 chr9 52000332 52000357 -65862270 + AT_rich Low_complexity Low_complexity 1 25 0 1534 162 24 44 chr9 52000357 52000654 -65861973 - AluJo SINE Alu -21 291 1 642 254 99 9 chr9 52000726 52000958 -65861669 - MER112 DNA MER1_type -2 254 2 1402 206 34 20 chr9 52001398 52001690 -65860937 + AluJo SINE Alu 15 310 -2 631 192 123 7 chr9 52001740 52001886 -65860741 - L1ME4a LINE L1 -3 6118 5956 1408 183 8 12 chr9 52002054 52002300 -65860327 - AluJo SINE Alu -53 259 15 1620 162 3 55 chr9 52002326 52002635 -65859992 + AluJb SINE Alu 1 293 -19 1616 153 36 27 chr9 52002642 52002943 -65859684 + AluJo SINE Alu 1 304 -8 201 328 16 0 chr9 52003083 52003144 -65859483 - MIR SINE MIR 0 262 201 919 289 16 4 chr9 52003191 52003437 -65859190 + MIR SINE MIR 8 256 -6 1432 179 49 11 chr9 52003668 52003953 -65858674 - MER58B DNA MER1_type -1 340 45 2374 109 0 0 chr9 52004742 52005045 -65857582 + AluSq SINE Alu 1 303 -10 2417 97 0 0 chr9 52005054 52005362 -65857265 + AluSc SINE Alu 2 309 0 274 261 0 54 chr9 52006006 52006098 -65856529 + MER112 DNA MER1_type 1 87 -173 1828 149 48 14 chr9 52006334 52006660 -65855967 + AluJb SINE Alu 1 312 0 21 0 0 0 chr9 52006877 52006898 -65855729 + AT_rich Low_complexity Low_complexity 1 21 0 1956 122 34 0 chr9 52007396 52007691 -65854936 - AluSx SINE Alu -7 305 1 434 236 0 99 chr9 52008167 52008279 -65854348 - L1ME LINE L1 -582 5588 5495 3210 121 10 50 chr9 52008279 52008865 -65853762 - L1MC1 LINE L1 -6 6327 5765 434 236 0 99 chr9 52008865 52008913 -65853714 - L1ME LINE L1 -675 5495 5444 1928 151 3 29 chr9 52009087 52009398 -65853229 - AluJo SINE Alu -9 303 1 182 212 30 0 chr9 52010082 52010115 -65852512 - L2 LINE L2 -179 3093 3060 2156 115 23 3 chr9 52010191 52010495 -65852132 - AluSg SINE Alu 0 310 1 1442 163 0 0 chr9 52011817 52012044 -65850583 - AluSg/x SINE Alu -1 311 85 3127 128 50 5 chr9 52012051 52012533 -65850094 - L1MA8 LINE L1 -2 6289 5777 204 40 0 0 chr9 52012533 52012558 -65850069 + (TG)n Simple_repeat Simple_repeat 2 26 0 3127 128 50 5 chr9 52012558 52012637 -65849990 - L1MA8 LINE L1 -514 5777 5703 264 232 73 0 chr9 52012754 52012836 -65849791 - Charlie5 DNA MER1_type -2500 112 25 24 0 0 0 chr9 52012910 52012934 -65849693 + AT_rich Low_complexity Low_complexity 1 24 0 2111 134 0 3 chr9 52012934 52013233 -65849394 - AluSx SINE Alu -14 298 1 417 237 17 34 chr9 52013279 52013397 -65849230 - L2 LINE L2 -1 3312 3197 23 0 0 0 chr9 52013662 52013685 -65848942 + AT_rich Low_complexity Low_complexity 1 23 0 1793 129 8 0 chr9 52013685 52013933 -65848694 - AluSx SINE Alu -26 286 37 216 86 0 0 chr9 52014017 52014052 -65848575 + (T)n Simple_repeat Simple_repeat 1 35 0 1119 214 59 42 chr9 52014106 52014204 -65848423 - MER2 DNA MER2_type 0 344 249 2008 138 0 0 chr9 52014204 52014486 -65848141 + AluSx SINE Alu 4 285 -27 1119 214 59 42 chr9 52014486 52014724 -65847903 - MER2 DNA MER2_type -95 249 2 314 205 229 0 chr9 52014726 52014809 -65847818 - L2 LINE L2 -4 3309 3208 217 234 0 0 chr9 52014982 52015029 -65847598 + T-rich Low_complexity Low_complexity 2 48 0 2024 111 31 0 chr9 52015449 52015774 -65846853 - L1MA5A LINE L1 0 6297 5963 769 275 176 29 chr9 52016387 52016888 -65845739 - L2 LINE L2 -20 3293 2721 1769 134 116 30 chr9 52016964 52017299 -65845328 - THE1B LTR MaLR 0 364 1 265 229 156 0 chr9 52017486 52017582 -65845045 + MIR SINE MIR 38 148 -114 1760 169 25 25 chr9 52017829 52018065 -65844562 - MLT1B LTR MaLR -4 386 148 2304 96 3 0 chr9 52018065 52018358 -65844269 + AluSc SINE Alu 2 295 -14 1760 169 25 25 chr9 52018358 52018455 -65844172 - MLT1B LTR MaLR -241 149 53 364 179 83 12 chr9 52018455 52018539 -65844088 - Tigger5 DNA MER2_type 0 2323 2234 255 182 18 18 chr9 52018546 52018601 -65844026 - Tigger5 DNA MER2_type -2268 55 1 681 175 83 39 chr9 52019388 52019594 -65843033 + MIR SINE MIR 3 212 -50 26 64 0 0 chr9 52019792 52019839 -65842788 + AT_rich Low_complexity Low_complexity 1 47 0 252 280 133 27 chr9 52020652 52020812 -65841815 + MIR SINE MIR 17 192 -70 670 243 145 14 chr9 52020998 52021212 -65841415 + MIR SINE MIR 12 253 -9 2388 55 6 10 chr9 52021519 52021830 -65840797 + AluY SINE Alu 1 310 -1 797 128 48 118 chr9 52022470 52022517 -65840110 - L1MB5 LINE L1 -6 6168 6119 2635 96 34 7 chr9 52022517 52022933 -65839694 - L1MA2 LINE L1 0 6304 5878 797 128 48 118 chr9 52022933 52023072 -65839555 - L1MB5 LINE L1 -55 6119 5995 28 29 0 0 chr9 52024266 52024301 -65838326 + AT_rich Low_complexity Low_complexity 1 35 0 2014 133 0 17 chr9 52024301 52024594 -65838033 - AluSx SINE Alu -24 288 1 2281 108 0 0 chr9 52024963 52025270 -65837357 - AluSg1 SINE Alu -2 307 1 679 228 82 26 chr9 52026078 52026311 -65836316 + L1MC4a LINE L1 5665 5910 -1898 402 317 140 22 chr9 52026460 52026731 -65835896 + L1MC4a LINE L1 6042 6344 -1464 340 290 11 11 chr9 52026739 52026832 -65835795 - L1MC4 LINE L1 -1337 6705 6613 642 141 35 0 chr9 52026836 52027006 -65835621 + (TA)n Simple_repeat Simple_repeat 2 177 0 3793 221 70 48 chr9 52027080 52028543 -65834084 + L1MC5 LINE L1 6413 7915 -46 601 215 134 5 chr9 52030216 52030402 -65832225 - L1ME3 LINE L1 -1 6161 5952 770 207 66 38 chr9 52030759 52030972 -65831655 + MER20 DNA MER1_type 1 219 0 462 36 0 0 chr9 52031336 52031392 -65831235 + (CA)n Simple_repeat Simple_repeat 2 57 0 239 289 88 54 chr9 52032863 52033236 -65829391 - HAL1 LINE L1 -11 2496 2111 896 249 274 10 chr9 52033444 52033951 -65828676 - HAL1 LINE L1 -688 1819 1179 1523 213 158 22 chr9 52034006 52034537 -65828090 - MLT1E1 LTR MaLR 0 654 10 594 251 88 90 chr9 52034546 52034778 -65827849 - HAL1 LINE L1 -1449 1058 827 2144 106 3 7 chr9 52034778 52035071 -65827556 - AluSx SINE Alu -20 292 1 594 251 88 90 chr9 52035071 52035808 -65826819 - HAL1 LINE L1 -1680 827 91 1362 157 77 0 chr9 52036805 52037092 -65825535 + MER33 DNA MER1_type 7 315 -9 1822 160 47 7 chr9 52037414 52037714 -65824913 - AluSx SINE Alu 0 312 1 2108 129 26 0 chr9 52037800 52038102 -65824525 - AluSx SINE Alu -2 310 1 435 113 0 0 chr9 52038131 52038202 -65824425 + L1 LINE L1 3287 3357 -2789 433 256 116 19 chr9 52038198 52038413 -65824214 + L1ME LINE L1 5566 5801 -320 * 2051 124 10 16 chr9 52039396 52039710 -65822917 + AluJb SINE Alu 1 312 0 21 36 0 0 chr9 52039962 52039990 -65822637 + AT_rich Low_complexity Low_complexity 1 28 0 1753 170 10 10 chr9 52040139 52040427 -65822200 - AluJo SINE Alu -24 288 1 1943 110 0 4 chr9 52041322 52041585 -65821042 - AluSx SINE Alu -15 297 36 880 176 191 0 chr9 52041740 52041996 -65820631 - L1ME3 LINE L1 -13 6149 5845 1651 184 18 4 chr9 52042653 52042925 -65819702 + AluJo SINE Alu 1 276 -36 953 177 42 88 chr9 52043087 52043472 -65819155 - L1MC5 LINE L1 -284 7677 7311 464 164 0 45 chr9 52043507 52043641 -65818986 + (TCTA)n Simple_repeat Simple_repeat 3 130 0 240 35 0 0 chr9 52043700 52043729 -65818898 + (CCTA)n Simple_repeat Simple_repeat 1 29 0 1284 224 65 48 chr9 52043825 52044364 -65818263 - L1MC5 LINE L1 -726 7235 6688 198 0 0 0 chr9 52045413 52045435 -65817192 + (T)n Simple_repeat Simple_repeat 1 22 0 34 0 0 0 chr9 52045653 52045687 -65816940 + AT_rich Low_complexity Low_complexity 1 34 0 2329 86 0 40 chr9 52047516 52047841 -65814786 + AluSx SINE Alu 1 312 0 340 303 62 39 chr9 52048350 52048528 -65814099 - MIR SINE MIR 0 262 81 529 303 105 26 chr9 52049322 52049550 -65813077 + MIR SINE MIR 13 258 -4 2373 109 3 0 chr9 52049742 52050053 -65812574 - AluSx SINE Alu 0 312 1 2397 90 3 0 chr9 52051845 52052157 -65810470 + AluSp SINE Alu 1 313 0 272 27 27 0 chr9 52053088 52053125 -65809502 + (ATTG)n Simple_repeat Simple_repeat 4 41 0 1920 116 0 44 chr9 52053125 52053418 -65809209 - AluSx SINE Alu -32 280 1 573 182 0 0 chr9 52053494 52053604 -65809023 - L1MB7 LINE L1 -15 6169 6060 253 181 96 11 chr9 52053616 52053710 -65808917 - L1MB2 LINE L1 -2 6169 6068 1352 142 21 8 chr9 52053853 52054092 -65808535 - MER4D LTR ERV1 0 903 662 2247 152 50 33 chr9 52054233 52054560 -65808067 + MSTC LTR MaLR 1 338 -90 2268 109 0 3 chr9 52054560 52054863 -65807764 - AluSq SINE Alu -11 302 1 2247 152 50 33 chr9 52054863 52054956 -65807671 + MSTC LTR MaLR 338 428 0 239 274 192 0 chr9 52055211 52055284 -65807343 + L2 LINE L2 3203 3289 -24 1479 199 93 18 chr9 52055341 52055738 -65806889 - L1ME1 LINE L1 -62 6104 5678 22 0 0 0 chr9 52055872 52055894 -65806733 + AT_rich Low_complexity Low_complexity 1 22 0 311 322 51 15 chr9 52056395 52056565 -65806062 + MIR SINE MIR 43 222 -40 2302 95 7 7 chr9 52056565 52056871 -65805756 + AluSx SINE Alu 1 306 -6 311 322 51 15 chr9 52056871 52056904 -65805723 + MIR SINE MIR 222 252 -10 332 314 23 0 chr9 52056905 52056991 -65805636 + MIR3 SINE MIR 99 186 -22 24 32 0 0 chr9 52057126 52057157 -65805470 + AT_rich Low_complexity Low_complexity 1 31 0 329 322 0 35 chr9 52057519 52057634 -65804993 + L3 LINE CR1 177 287 -1290 225 233 262 10 chr9 52057640 52057743 -65804884 - L1MC4 LINE L1 -220 7822 7694 2284 104 0 0 chr9 52057748 52058046 -65804581 - AluSx SINE Alu -14 298 1 1739 167 24 0 chr9 52058117 52058405 -65804222 - AluJb SINE Alu -17 295 1 1846 140 11 11 chr9 52058581 52058867 -65803760 + AluJb SINE Alu 10 295 -17 642 313 81 14 chr9 52058867 52059238 -65803389 - L1MC4a LINE L1 -1946 5862 5467 313 338 179 54 chr9 52059452 52059843 -65802784 + L2 LINE L2 2829 3268 -4 3729 198 35 25 chr9 52059948 52060267 -65802360 - L1MB4 LINE L1 -68 6610 6296 2118 99 0 14 chr9 52060267 52060561 -65802066 - AluSx SINE Alu 0 312 23 3729 198 35 25 chr9 52060561 52060770 -65801857 - L1MB4 LINE L1 -382 6296 6091 2403 50 3 3 chr9 52060770 52061068 -65801559 - AluY SINE Alu -13 298 1 3729 198 35 25 chr9 52061068 52062141 -65800486 - L1MB4 LINE L1 -587 6091 4999 2304 121 186 29 chr9 52062191 52062703 -65799924 + LTR14B LTR ERVK 17 608 0 4990 208 77 49 chr9 52062715 52065727 -65796900 - L1MB4 LINE L1 -2492 4152 1054 651 241 96 101 chr9 52065739 52066117 -65796510 - L1MB4 LINE L1 -5584 958 609 260 269 46 9 chr9 52066493 52066601 -65796026 - L1MB4 LINE L1 -6429 113 2 292 265 68 41 chr9 52066791 52066938 -65795689 - L2 LINE L2 0 3313 3163 740 197 0 8 chr9 52067051 52067183 -65795444 + FLAM_A SINE Alu 2 132 -1 2233 108 23 98 chr9 52068002 52068326 -65794301 + LTR23 LTR ERV1 1 282 -155 2152 117 0 0 chr9 52068326 52068640 -65793987 + AluSc SINE Alu 1 314 0 2233 108 23 98 chr9 52068640 52068786 -65793841 + LTR23 LTR ERV1 282 437 0 325 312 203 35 chr9 52068948 52069189 -65793438 - L2 LINE L2 0 3313 3114 4535 137 8 27 chr9 52069189 52069707 -65792920 + MER72 LTR ERV1 1 502 -220 2228 110 0 10 chr9 52069707 52070007 -65792620 - AluSx SINE Alu -13 299 3 4535 137 8 27 chr9 52070007 52070224 -65792403 + MER72 LTR ERV1 502 722 0 325 312 203 35 chr9 52070224 52070415 -65792212 - L2 LINE L2 -199 3114 2808 984 171 60 67 chr9 52070427 52070696 -65791931 + MER5C DNA MER1_type 58 324 0 293 355 8 8 chr9 52070697 52070821 -65791806 - L2 LINE L2 -505 2809 2686 1017 284 80 86 chr9 52071087 52071810 -65790817 - L2 LINE L2 -604 2710 1991 2302 129 0 0 chr9 52071810 52072119 -65790508 + AluSx SINE Alu 1 309 -3 1017 284 80 86 chr9 52072119 52072220 -65790407 - L2 LINE L2 -1323 1991 1891 590 309 77 43 chr9 52072808 52073135 -65789492 - L3 LINE CR1 -27 1550 1213 901 263 138 34 chr9 52073722 52074221 -65788406 + MLT1H1 LTR MaLR 2 552 -3 502 270 85 11 chr9 52074223 52074412 -65788215 - MIR SINE MIR -59 203 1 373 217 42 42 chr9 52074989 52075132 -65787495 + MER90 LTR ERV1 460 602 -12 2189 107 10 3 chr9 52075195 52075495 -65787132 - AluSx SINE Alu -10 302 1 1691 157 20 73 chr9 52075584 52075980 -65786647 - MLT1B LTR MaLR -8 382 8 588 303 171 43 chr9 52076280 52076524 -65786103 + L2 LINE L2 2141 2352 -962 3956 59 10 2 chr9 52076524 52077033 -65785594 - LTR10D LTR ERV1 0 513 1 588 303 171 43 chr9 52077033 52077524 -65785103 + L2 LINE L2 2352 2970 -344 346 365 14 14 chr9 52077662 52077810 -65784817 + MIR SINE MIR 6 153 -109 1054 153 74 0 chr9 52077844 52078047 -65784580 - MSTB LTR MaLR 0 426 209 595 128 86 0 chr9 52078049 52078166 -65784461 + L1PBa LINE L1 2190 2316 -4547 481 261 54 23 chr9 52078270 52078629 -65783998 - L1ME LINE L1 -561 5629 5245 498 225 78 94 chr9 52078724 52078968 -65783659 - L1ME LINE L1 -1620 4595 4356 272 276 110 33 chr9 52078971 52079031 -65783596 - L1ME LINE L1 -2770 3445 3391 2229 86 22 32 chr9 52079031 52079346 -65783281 + AluSx SINE Alu 1 312 0 272 276 110 33 chr9 52079346 52079738 -65782889 - L1ME LINE L1 -2824 3391 2958 302 165 0 76 chr9 52079790 52079869 -65782758 + MLT1E2 LTR MaLR 2 74 -552 32 0 0 0 chr9 52079869 52079901 -65782726 + AT_rich Low_complexity Low_complexity 1 32 0 730 82 0 0 chr9 52079901 52079998 -65782629 - HY3 scRNA scRNA -1 100 4 2093 186 48 49 chr9 52079998 52080567 -65782060 + MLT1E2 LTR MaLR 59 626 0 550 302 43 30 chr9 52080790 52081158 -65781469 - L1ME LINE L1 -3573 2642 2270 300 333 63 6 chr9 52081175 52081349 -65781278 - L1ME LINE L1 -4086 2310 2127 1826 112 2 137 chr9 52081676 52082086 -65780541 - THE1A LTR MaLR 0 355 1 180 111 0 0 chr9 52082389 52082416 -65780211 + (TATG)n Simple_repeat Simple_repeat 3 29 0 2053 134 3 3 chr9 52082416 52082714 -65779913 - AluSx SINE Alu -14 298 1 2671 113 34 5 chr9 52082823 52083239 -65779388 - MSTA LTR MaLR 0 428 1 296 301 0 0 chr9 52083268 52083361 -65779266 - HAL1 LINE L1 -863 1644 1552 2104 155 21 13 chr9 52084011 52084398 -65778229 - MLT1B LTR MaLR 0 390 1 26 0 0 0 chr9 52084768 52084794 -65777833 + AT_rich Low_complexity Low_complexity 1 26 0 208 209 0 66 chr9 52085596 52085687 -65776940 + A-rich Low_complexity Low_complexity 2 86 0 719 198 156 67 chr9 52085782 52086140 -65776487 + MLT1C LTR MaLR 1 390 -77 515 139 0 0 chr9 52086141 52086213 -65776414 - MER5A DNA MER1_type -116 73 2 3867 92 18 2 chr9 52086218 52086763 -65775864 - MER41A LTR ERV1 0 554 1 425 234 188 16 chr9 52086774 52086902 -65775725 - MER5B DNA MER1_type -3 175 26 1803 272 86 47 chr9 52087527 52088332 -65774295 - HAL1 LINE L1 -180 2327 1442 2367 83 3 7 chr9 52088332 52088633 -65773994 + AluSp SINE Alu 1 300 -13 1803 272 86 47 chr9 52088633 52089230 -65773397 - HAL1 LINE L1 -1065 1442 870 360 271 62 40 chr9 52089230 52089407 -65773220 + LTR50 LTR ERVL 1 181 -614 14864 207 32 44 chr9 52090292 52094925 -65767702 - L1PA12 LINE L1 -1922 5662 2 4401 226 25 85 chr9 52094922 52095306 -65767321 - L1PA12 LINE L1 -2749 4835 4429 * 1548 130 38 8 chr9 52095306 52095567 -65767060 - L1PA11 LINE L1 0 6174 5906 4401 226 25 85 chr9 52095567 52096806 -65765821 - L1PA12 LINE L1 -3155 4429 3117 1786 46 0 30 chr9 52096806 52097043 -65765584 - L1PA5 LINE L1 -2 6152 5923 4401 226 25 85 chr9 52097043 52098283 -65764344 - L1PA12 LINE L1 -4467 3117 2209 6614 118 26 19 chr9 52098283 52099346 -65763281 - MER11C LTR ERVK 0 1071 1 4401 226 25 85 chr9 52099346 52099373 -65763254 - L1PA12 LINE L1 -5375 2209 2182 2314 97 3 10 chr9 52099468 52099767 -65762860 - AluSp SINE Alu -16 297 1 22 0 0 0 chr9 52099988 52100010 -65762617 + AT_rich Low_complexity Low_complexity 1 22 0 1954 176 35 0 chr9 52100011 52100381 -65762246 - L1MB2 LINE L1 -6 6976 6594 462 232 0 0 chr9 52100396 52100508 -65762119 + (TA)n Simple_repeat Simple_repeat 1 112 0 4623 208 44 44 chr9 52100515 52101963 -65760664 - L1MB2 LINE L1 -391 6591 5159 2065 93 0 0 chr9 52101963 52102222 -65760405 - AluY SINE Alu -13 298 40 4623 208 44 44 chr9 52102222 52102627 -65760000 - L1MB2 LINE L1 -1823 5159 4755 2153 225 123 24 chr9 52102638 52103482 -65759145 - L1MB2 LINE L1 -5087 1768 850 752 197 51 22 chr9 52103493 52103671 -65758956 - L1MB2 LINE L1 -6052 807 625 * 1061 264 45 65 chr9 52103662 52104044 -65758583 - L1MB2 LINE L1 -6474 385 12 856 242 194 61 chr9 52104046 52104795 -65757832 - L1MC4a LINE L1 -966 6842 5937 892 155 0 0 chr9 52104795 52104924 -65757703 + FLAM_C SINE Alu 1 129 -4 856 242 194 61 chr9 52104924 52105128 -65757499 - L1MC4a LINE L1 -1871 5937 5762 666 203 0 24 chr9 52105157 52105280 -65757347 - FLAM_C SINE Alu -21 122 3 376 280 65 0 chr9 52105303 52105471 -65757156 - L1MC4a LINE L1 -2058 5750 5572 1772 176 68 31 chr9 52105487 52105931 -65756696 - MLT1C LTR MaLR -2 465 6 349 269 58 18 chr9 52105970 52106141 -65756486 - L1MC4a LINE L1 -2283 5525 5348 204 315 27 14 chr9 52106857 52106930 -65755697 + MIR SINE MIR 37 110 -152 286 160 20 0 chr9 52106947 52106997 -65755630 + MER3 DNA MER1_type 159 209 0 * 461 135 22 45 chr9 52106997 52107046 -65755581 - MER3 DNA MER1_type -162 47 1 6527 70 30 0 chr9 52107094 52108266 -65754361 - L1PA8 LINE L1 -3 6169 4991 1910 149 12 20 chr9 52108367 52108709 -65753918 + MSTA-int LTR MaLR 1242 1580 0 1957 124 139 13 chr9 52108709 52109089 -65753538 + MSTA LTR MaLR 1 428 0 6387 247 35 21 chr9 52109094 52109490 -65753137 - L1PA13 LINE L1 -2728 4069 3680 2386 113 0 0 chr9 52109490 52109800 -65752827 - AluSq SINE Alu -3 310 1 6387 247 35 21 chr9 52109800 52112141 -65750486 - L1PA13 LINE L1 -3117 3680 1278 2498 290 18 26 chr9 52112164 52112894 -65749733 - L1PA13 LINE L1 -6063 724 1 563 269 91 55 chr9 52113206 52113370 -65749257 + L1M2 LINE L1 207 414 -6424 318 299 73 68 chr9 52113445 52113622 -65749005 + MER5A DNA MER1_type 6 183 -6 217 290 45 97 chr9 52113468 52113644 -65748983 - MER5A DNA MER1_type -22 167 1 * 210 320 13 13 chr9 52113721 52113796 -65748831 + MIR SINE MIR 27 101 -107 2325 106 53 0 chr9 52114019 52114359 -65748268 - L1MA1 LINE L1 -7 6295 5938 30566 61 7 3 chr9 52114361 52119014 -65743613 - L1PA7 LINE L1 -1 6153 1486 7644 26 6 0 chr9 52119169 52120023 -65742604 + L1PA3 LINE L1 5297 6155 0 485 238 123 8 chr9 52120251 52120373 -65742254 - L2 LINE L2 0 3313 3178 209 256 61 122 chr9 52120411 52120575 -65742052 + MER5A DNA MER1_type 14 167 -22 * 419 282 52 58 chr9 52120429 52120603 -65742024 - MER5A DNA MER1_type -14 175 3 214 255 0 0 chr9 52121085 52121132 -65741495 + (TGAA)n Simple_repeat Simple_repeat 1 47 0 1352 160 20 20 chr9 52121691 52121935 -65740692 + MER96B DNA MER1_type? 174 417 0 265 329 128 36 chr9 52121989 52122208 -65740419 + L2 LINE L2 3034 3272 0 419 327 38 6 chr9 52122270 52122429 -65740198 - MIR SINE MIR 0 262 99 3532 167 58 32 chr9 52122941 52123648 -65738979 + LTR8A LTR ERV1 3 727 0 180 0 0 0 chr9 52123673 52123693 -65738934 + (TG)n Simple_repeat Simple_repeat 2 21 0 647 175 0 0 chr9 52124484 52124581 -65738046 - U6 snRNA snRNA -10 97 1 21523 47 50 3 chr9 52125078 52127811 -65734816 - L1P LINE L1 -3283 2863 2 1861 163 3 3 chr9 52128195 52128496 -65734131 - AluSq SINE Alu -12 301 1 22 0 0 0 chr9 52128765 52128787 -65733840 + AT_rich Low_complexity Low_complexity 1 22 0 544 238 16 8 chr9 52128886 52129008 -65733619 - LTR16C LTR ERVL 0 491 369 1272 195 100 49 chr9 52129304 52129693 -65732934 + MLT2C2 LTR ERVL 56 464 0 241 246 77 15 chr9 52131178 52131243 -65731384 - MIR SINE MIR -142 120 52 7064 62 16 9 chr9 52131255 52132644 -65729983 - L1PA8 LINE L1 -13 6159 4763 1378 186 99 94 chr9 52132963 52133442 -65729185 + MER92C LTR ERV1 2 552 -2 237 203 150 38 chr9 52134605 52134738 -65727889 - L1ME4a LINE L1 -2 6119 5972 21 0 0 0 chr9 52136033 52136054 -65726573 + AT_rich Low_complexity Low_complexity 1 21 0 551 139 0 0 chr9 52136410 52136496 -65726131 + L1PB1 LINE L1 6058 6143 -8 1576 196 7 0 chr9 52136780 52137088 -65725539 - AluJb SINE Alu 0 310 1 3555 169 7 0 chr9 52137123 52137702 -65724925 - L1MB5 LINE L1 -6 6168 5586 261 214 36 0 chr9 52137945 52138001 -65724626 + MER115 DNA AcHobo 2 59 -634 1922 141 0 3 chr9 52138041 52138324 -65724303 + AluSx SINE Alu 20 301 -11 426 149 27 0 chr9 52138324 52138398 -65724229 + AluYb8 SINE Alu 231 306 -12 305 368 72 0 chr9 52140060 52140226 -65722401 + L1ME4a LINE L1 5693 5870 -251 2264 101 3 0 chr9 52140230 52140527 -65722100 - AluSg SINE Alu -12 298 1 22 0 0 0 chr9 52140590 52140612 -65722015 + AT_rich Low_complexity Low_complexity 1 22 0 1559 239 151 49 chr9 52140727 52142189 -65720438 - HAL1 LINE L1 -113 2394 756 2500 157 51 5 chr9 52142189 52142598 -65720029 - MSTA LTR MaLR 0 428 1 4527 165 18 1 chr9 52142599 52143327 -65719300 - MSTA-int LTR MaLR -1 1650 911 6398 150 9 14 chr9 52143339 52145371 -65717256 - L1PB1 LINE L1 0 6151 4137 5487 154 42 2 chr9 52145368 52146256 -65716371 - MSTA-int LTR MaLR -719 932 10 * 2673 137 49 5 chr9 52146266 52146676 -65715951 - MSTA LTR MaLR 0 428 1 634 311 102 20 chr9 52146708 52147167 -65715460 - HAL1 LINE L1 -1777 730 234 1592 160 56 0 chr9 52148014 52148301 -65714326 + LTR32 LTR ERVL 15 317 -154 568 152 30 10 chr9 52148401 52148500 -65714127 + LTR32 LTR ERVL 356 456 -15 1426 179 32 0 chr9 52148534 52148785 -65713842 - LTR32 LTR ERVL -198 273 15 734 250 133 60 chr9 52148955 52149287 -65713340 + LTR18A LTR ERVL 1 356 -1 239 288 38 0 chr9 52149502 52149582 -65713045 - MIR3 SINE MIR -21 187 105 281 271 25 111 chr9 52149953 52150152 -65712475 + MIR SINE MIR 6 187 -75 486 233 191 29 chr9 52150347 52150557 -65712070 - L2 LINE L2 -222 3050 2807 885 248 61 0 chr9 52150711 52150957 -65711670 + MIR SINE MIR 1 261 -1 503 221 11 0 chr9 52152595 52152690 -65709937 - MIR SINE MIR -65 143 48 978 182 6 17 chr9 52152735 52152911 -65709716 - MER5B DNA MER1_type 0 178 5 435 206 20 29 chr9 52152917 52153019 -65709608 + MER5B DNA MER1_type 1 101 -77 1204 181 169 55 chr9 52153341 52153667 -65708960 + MLT1A1 LTR MaLR 1 363 -2 429 209 87 35 chr9 52153685 52153800 -65708827 - MER5B DNA MER1_type -24 154 34 2076 188 31 14 chr9 52154524 52154875 -65707752 - LTR18A LTR ERVL 0 357 1 2343 168 19 3 chr9 52154876 52155246 -65707381 - HERVL18 LTR ERVL 0 6047 5672 5849 150 5 5 chr9 52155247 52156115 -65706512 - HERVL18 LTR ERVL -786 5261 4394 5340 168 19 3 chr9 52156117 52156964 -65705663 - HERVL18 LTR ERVL -2468 3579 2720 1172 109 80 3 chr9 52156965 52157193 -65705434 - HERVL18 LTR ERVL -3597 2450 2141 419 61 0 0 chr9 52157191 52157240 -65705387 - HERVL18 LTR ERVL -4224 1823 1775 * 1263 214 17 13 chr9 52157237 52157471 -65705156 - HERVL18 LTR ERVL -4433 1614 1380 * 1662 206 34 3 chr9 52157448 52157768 -65704859 - HERVL18 LTR ERVL -5080 967 638 1727 184 0 0 chr9 52157771 52158054 -65704573 - HERVL18 LTR ERVL -5757 290 8 2174 144 16 84 chr9 52158067 52158450 -65704177 - LTR18A LTR ERVL 0 357 1 2269 89 0 0 chr9 52158869 52159150 -65703477 - AluY SINE Alu -13 298 18 259 200 0 0 chr9 52159482 52159527 -65703100 + L2 LINE L2 3223 3267 -5 808 157 12 0 chr9 52160222 52160388 -65702239 + CT-rich Low_complexity Low_complexity 1 168 0 180 353 0 0 chr9 52160392 52160443 -65702184 + L2 LINE L2 3249 3299 -14 249 196 71 18 chr9 52160651 52160707 -65701920 + MIR3 SINE MIR 120 178 -30 2208 125 0 6 chr9 52160923 52161235 -65701392 + AluSx SINE Alu 1 310 -2 416 285 34 73 chr9 52161758 52161937 -65700690 - MER5A DNA MER1_type -5 184 13 200 243 0 0 chr9 52162135 52162172 -65700455 + MER5A DNA MER1_type 152 188 -1 5235 159 17 13 chr9 52162280 52163007 -65699620 - L1PA15 LINE L1 -21 6144 5422 2339 101 3 0 chr9 52163007 52163314 -65699313 - AluY SINE Alu -3 308 1 5235 159 17 13 chr9 52163314 52164046 -65698581 - L1PA15 LINE L1 -743 5422 4679 407 175 0 0 chr9 52164053 52164133 -65698494 - L1 LINE L1 -2647 4918 4839 405 192 0 0 chr9 52164134 52164207 -65698420 + MSTA LTR MaLR 1 73 -355 284 67 22 0 chr9 52164453 52164498 -65698129 + MADE1 DNA Mariner 1 46 -34 429 248 25 16 chr9 52164712 52164884 -65697743 + L1ME4a LINE L1 5703 5868 -264 2382 88 52 19 chr9 52165317 52165680 -65696947 + THE1C LTR MaLR 1 375 0 30 45 0 0 chr9 52166074 52166118 -65696509 + AT_rich Low_complexity Low_complexity 1 44 0 184 122 49 0 chr9 52166344 52166385 -65696242 + CT-rich Low_complexity Low_complexity 4 46 0 202 200 0 0 chr9 52166919 52166959 -65695668 + GA-rich Low_complexity Low_complexity 4 43 0 282 29 0 0 chr9 52167425 52167460 -65695167 + AluY SINE Alu 7 41 -261 10817 133 22 15 chr9 52167562 52170096 -65692531 - L1P3 LINE L1 -3884 2577 6 11924 175 53 18 chr9 52170104 52172520 -65690107 - L1 LINE L1 -5053 2512 13 201 203 0 136 chr9 52174148 52174207 -65688420 + MER5B DNA MER1_type 4 54 -124 1990 119 11 3 chr9 52174318 52174604 -65688023 - AluSq SINE Alu -25 288 1 1730 202 34 11 chr9 52175793 52176149 -65686478 + MLT1A1 LTR MaLR 2 365 0 2266 208 33 113 chr9 52176490 52176841 -65685786 - L1ME1 LINE L1 -5 6161 5784 2213 118 7 10 chr9 52176841 52177146 -65685481 + AluSx SINE Alu 1 304 -8 2266 208 33 113 chr9 52177146 52177635 -65684992 - L1ME1 LINE L1 -382 5784 5388 679 195 63 11 chr9 52177629 52177803 -65684824 + L1MB4 LINE L1 5997 6179 -1 * 5385 138 45 12 chr9 52177872 52178365 -65684262 - L1PB3 LINE L1 -4 6150 5675 6881 105 28 19 chr9 52178365 52179426 -65683201 - MER11C LTR ERVK 0 1071 1 5385 138 45 12 chr9 52179426 52180431 -65682196 - L1PB3 LINE L1 -479 5675 4616 658 225 22 44 chr9 52180433 52180615 -65682012 - MER77 LTR ERV1 -427 178 1 1538 214 68 50 chr9 52180615 52180920 -65681707 - L1ME1 LINE L1 -1212 4934 4611 1652 102 9 0 chr9 52180920 52181145 -65681482 - AluSc SINE Alu 0 309 83 1538 214 68 50 chr9 52181145 52181423 -65681204 - L1ME1 LINE L1 -1535 4611 4340 5389 167 49 32 chr9 52181501 52181974 -65680653 - L1MC1 LINE L1 0 6333 5869 1802 164 7 7 chr9 52181974 52182272 -65680355 - AluJo SINE Alu -12 300 3 5389 167 49 32 chr9 52182272 52182768 -65679859 - L1MC1 LINE L1 -464 5869 5383 1736 176 17 26 chr9 52182768 52183070 -65679557 - AluJo SINE Alu -8 304 6 5389 167 49 32 chr9 52183070 52183704 -65678923 - L1MC1 LINE L1 -950 5383 4697 215 219 0 0 chr9 52183757 52183798 -65678829 + (TG)n Simple_repeat Simple_repeat 2 42 0 582 86 14 129 chr9 52183798 52183938 -65678689 - L1MCa LINE L1 -5028 1398 1275 430 222 80 40 chr9 52184007 52184123 -65678504 - L1MC5 LINE L1 -518 7443 7316 2146 154 14 0 chr9 52184123 52184481 -65678146 + MER47A DNA MER2_type 1 363 -3 430 222 80 40 chr9 52184481 52184540 -65678087 - L1MC5 LINE L1 -645 7316 7261 * 1348 282 47 47 chr9 52184528 52184926 -65677701 - L1MC4 LINE L1 -596 7446 7046 2068 124 24 10 chr9 52184926 52185224 -65677403 - AluSx SINE Alu -10 302 1 1348 282 47 47 chr9 52185224 52185569 -65677058 - L1MC4 LINE L1 -995 7047 6703 394 300 172 22 chr9 52185761 52186028 -65676599 - L1MC4a LINE L1 -1364 6444 6138 1384 231 198 40 chr9 52186028 52186636 -65675991 + LTR50 LTR ERVL 1 722 -73 2485 64 0 10 chr9 52186636 52186950 -65675677 - AluY SINE Alu 0 311 1 1384 231 198 40 chr9 52186950 52186999 -65675628 + LTR50 LTR ERVL 722 762 -33 319 263 150 66 chr9 52187025 52187238 -65675389 - L1MC4a LINE L1 -1658 6150 5920 386 267 74 27 chr9 52187243 52187797 -65674830 - L1MC4a LINE L1 -1867 5941 5254 2808 10 0 0 chr9 52188431 52188737 -65673890 + AluYa5 SINE Alu 1 306 -5 13902 165 25 15 chr9 52188820 52192360 -65670267 - L1PA13 LINE L1 0 6814 3239 3442 135 45 11 chr9 52192511 52193154 -65669473 - L1PA13 LINE L1 -4555 2232 1568 372 244 12 0 chr9 52193156 52193238 -65669389 - MLT1F LTR MaLR -459 83 1 259 294 134 16 chr9 52193563 52193686 -65668941 - MIR SINE MIR -66 142 20 389 306 29 35 chr9 52194792 52194965 -65667662 + L2 LINE L2 3106 3277 -36 180 0 0 0 chr9 52194989 52195009 -65667618 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 1031 236 60 50 chr9 52195125 52195507 -65667120 + LTR16C LTR ERVL 104 489 -2 5212 122 48 5 chr9 52195892 52196488 -65666139 - L1MA2 LINE L1 0 7723 7154 2194 107 56 34 chr9 52196488 52196844 -65665783 - THE1B LTR MaLR 0 364 1 11682 97 8 0 chr9 52196844 52198411 -65664216 - THE1B-int LTR MaLR 0 1580 1 2359 99 48 23 chr9 52198411 52198764 -65663863 - THE1B LTR MaLR 0 364 3 5212 122 48 5 chr9 52198764 52199020 -65663607 - L1MA2 LINE L1 -568 7155 6832 5730 171 44 9 chr9 52199215 52199829 -65662798 - L1MA2 LINE L1 -789 6776 6185 180 0 0 0 chr9 52199829 52199849 -65662778 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 5730 171 44 9 chr9 52199849 52200546 -65662081 - L1MA2 LINE L1 -1380 6185 5419 1529 184 49 9 chr9 52200552 52200878 -65661749 - L1MA2 LINE L1 -7215 350 12 2010 76 8 8 chr9 52200960 52201249 -65661378 + AluY SINE Alu 22 310 0 1668 165 41 0 chr9 52201593 52201896 -65660731 - MLT1B LTR MaLR 0 390 75 4029 143 83 9 chr9 52201896 52203021 -65659606 + Tigger3(Golem) DNA MER2_type 2 3008 -21 435 128 13 39 chr9 52203026 52203104 -65659523 - MLT1B LTR MaLR -314 76 1 369 258 141 57 chr9 52204360 52204643 -65657984 - L1MC4 LINE L1 -31 8011 7705 * 7639 198 35 15 chr9 52204632 52204899 -65657728 - L1PA16 LINE L1 -298 5868 5608 2332 101 7 0 chr9 52204899 52205207 -65657420 - AluSp SINE Alu -3 310 1 7639 198 35 15 chr9 52205207 52207202 -65655425 - L1PA16 LINE L1 -558 5608 3568 1866 163 0 14 chr9 52207202 52207496 -65655131 - AluSx SINE Alu -22 290 1 7639 198 35 15 chr9 52207496 52207690 -65654937 - L1PA16 LINE L1 -2598 3568 3379 19833 115 21 9 chr9 52207692 52212564 -65650063 - L1PA11 LINE L1 0 6489 1567 5772 129 39 32 chr9 52212572 52213575 -65649052 - L1PA11 LINE L1 -5446 1015 6 22 0 0 0 chr9 52213751 52213773 -65648854 + AT_rich Low_complexity Low_complexity 1 22 0 10692 232 53 12 chr9 52214241 52218475 -65644152 + L1PA16 LINE L1 1748 6150 -16 351 0 0 0 chr9 52218751 52218790 -65643837 + (CA)n Simple_repeat Simple_repeat 2 40 0 218 329 0 0 chr9 52218792 52218862 -65643765 - L2 LINE L2 -261 3011 2942 4975 156 53 23 chr9 52219048 52220109 -65642518 + L1MA5A LINE L1 4681 5811 -486 369 0 0 0 chr9 52220109 52220150 -65642477 + (CA)n Simple_repeat Simple_repeat 2 42 0 4975 156 53 23 chr9 52220150 52220651 -65641976 + L1MA5A LINE L1 5811 6295 -2 373 309 58 36 chr9 52221801 52221940 -65640687 - MIR3 SINE MIR -48 160 19 21 36 0 0 chr9 52222307 52222335 -65640292 + AT_rich Low_complexity Low_complexity 1 28 0 215 271 0 0 chr9 52222594 52222642 -65639985 - L2 LINE L2 0 3272 3225 2179 137 17 0 chr9 52223384 52223741 -65638886 - L1PB1 LINE L1 -7 6860 6498 267 94 101 27 chr9 52223747 52223896 -65638731 + (CATAT)n Simple_repeat Simple_repeat 4 163 0 270 56 0 0 chr9 52223907 52223943 -65638684 + (CA)n Simple_repeat Simple_repeat 2 37 0 6969 180 10 1 chr9 52223943 52225929 -65636698 - L1PB1 LINE L1 -369 6498 4492 195 69 0 0 chr9 52225930 52225959 -65636668 + (T)n Simple_repeat Simple_repeat 1 29 0 22 0 0 0 chr9 52226000 52226022 -65636605 + AT_rich Low_complexity Low_complexity 1 22 0 800 269 58 0 chr9 52226126 52226383 -65636244 + L1M4 LINE L1 3958 4229 -1917 40 0 0 0 chr9 52226452 52226492 -65636135 + AT_rich Low_complexity Low_complexity 1 40 0 1921 73 0 0 chr9 52226552 52226798 -65635829 - L1PA3 LINE L1 -3 6152 5907 41303 43 4 6 chr9 52226899 52232562 -65630065 - L1P1 LINE L1 -502 5653 2 10079 194 94 8 chr9 52232562 52236705 -65625922 - L1PB1 LINE L1 -2358 4504 6 21 0 0 0 chr9 52236787 52236808 -65625819 + AT_rich Low_complexity Low_complexity 1 21 0 21 82 0 0 chr9 52236839 52236888 -65625739 + AT_rich Low_complexity Low_complexity 1 49 0 363 156 60 9 chr9 52236891 52236979 -65625648 - L1MA5 LINE L1 -4 6293 6198 2624 104 92 5 chr9 52236981 52237393 -65625234 - LTR7 LTR ERV1 -2 448 1 7471 104 23 5 chr9 52237393 52238557 -65624070 - HERVH LTR ERV1 0 7713 6529 4091 85 2 0 chr9 52238530 52239141 -65623486 - HERVH LTR ERV1 -1333 6380 5769 * 1188 111 0 0 chr9 52239137 52239317 -65623310 - HERVH LTR ERV1 -3046 4667 4488 * 3003 125 16 6 chr9 52239319 52239816 -65622811 - HERVH LTR ERV1 -3720 3993 3492 892 133 7 0 chr9 52239806 52239956 -65622671 - HERVH LTR ERV1 -4423 3290 3140 * 17426 106 19 41 chr9 52239935 52242998 -65619629 - HERVH LTR ERV1 -4718 2995 1 2660 95 92 5 chr9 52243000 52243412 -65619215 - LTR7 LTR ERV1 -2 448 1 697 182 150 5 chr9 52243413 52243600 -65619027 - L1MA5 LINE L1 -99 6201 5988 459 214 20 20 chr9 52243807 52243905 -65618722 - MER2 DNA MER2_type -247 98 1 21 0 0 0 chr9 52244017 52244038 -65618589 + AT_rich Low_complexity Low_complexity 1 21 0 261 83 0 0 chr9 52244215 52244251 -65618376 + (T)n Simple_repeat Simple_repeat 1 36 0 679 193 44 0 chr9 52244708 52244843 -65617784 - MER5A DNA MER1_type -2 187 47 291 254 86 88 chr9 52244873 52245029 -65617598 + LTR16C LTR ERVL 50 205 -286 3619 137 30 30 chr9 52245029 52245664 -65616963 - MER41B LTR ERV1 0 635 1 291 254 86 88 chr9 52245664 52245916 -65616711 + LTR16C LTR ERVL 205 491 0 1765 142 230 40 chr9 52246040 52246485 -65616142 + LTR49 LTR ERV1 1 553 -42 2274 99 3 3 chr9 52246485 52246788 -65615839 - AluY SINE Alu -8 303 1 1765 142 230 40 chr9 52246788 52246842 -65615785 + LTR49 LTR ERV1 553 595 0 45 45 0 0 chr9 52246962 52247028 -65615599 + AT_rich Low_complexity Low_complexity 1 66 0 218 214 13 75 chr9 52247143 52247302 -65615325 + T-rich Low_complexity Low_complexity 3 151 0 2132 130 13 3 chr9 52247449 52247756 -65614871 + AluSx SINE Alu 3 312 0 195 364 74 8 chr9 52248356 52248477 -65614150 + MIR3 SINE MIR 45 173 -35 5048 100 98 35 chr9 52248501 52249594 -65613033 - MER11A LTR ERVK 0 1266 1 3332 134 62 58 chr9 52249731 52250056 -65612571 + LTR8A LTR ERV1 1 323 -404 2986 85 2 0 chr9 52250056 52250458 -65612169 - L1PA7 LINE L1 -7 6147 5745 3332 134 62 58 chr9 52250458 52250856 -65611771 + LTR8A LTR ERV1 323 727 0 1363 197 96 29 chr9 52252125 52252510 -65610117 + MER119 DNA MER1_type 109 519 -64 257 315 47 74 chr9 52252793 52252942 -65609685 - MIR3 SINE MIR -13 195 51 27 29 0 0 chr9 52253419 52253453 -65609174 + AT_rich Low_complexity Low_complexity 1 34 0 27 0 0 0 chr9 52254750 52254777 -65607850 + AT_rich Low_complexity Low_complexity 1 27 0 310 324 115 14 chr9 52254875 52255014 -65607613 + MIR SINE MIR 95 247 -15 193 121 30 0 chr9 52254986 52255019 -65607608 + L2 LINE L2 3265 3298 -15 * 294 273 72 50 chr9 52255358 52255497 -65607130 - MIR3 SINE MIR 0 208 67 365 267 113 33 chr9 52257141 52257291 -65605336 - MIR SINE MIR -56 206 45 349 286 124 43 chr9 52257908 52258118 -65604509 + MIR SINE MIR 10 236 -26 312 301 125 48 chr9 52258805 52259094 -65603533 - LTR16A1 LTR ERVL 0 457 147 315 122 0 0 chr9 52260070 52260119 -65602508 + (CA)n Simple_repeat Simple_repeat 2 50 0 1116 292 60 12 chr9 52260331 52260749 -65601878 + MLT1J1 LTR MaLR 2 439 -7 457 337 98 46 chr9 52260977 52261646 -65600981 + L2 LINE L2 2349 3063 -209 441 0 0 0 chr9 52262034 52262083 -65600544 + (CA)n Simple_repeat Simple_repeat 2 50 0 2746 10 0 0 chr9 52262301 52262603 -65600024 - AluYa5 SINE Alu -9 302 1 183 167 0 0 chr9 52263570 52263612 -65599015 + CT-rich Low_complexity Low_complexity 1 42 0 200 35 35 0 chr9 52263867 52263896 -65598731 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 375 303 45 13 chr9 52265066 52265221 -65597406 - MIR SINE MIR -56 206 47 1966 137 20 0 chr9 52265730 52266063 -65596564 - AluSx SINE Alu 0 343 5 24 32 0 0 chr9 52266930 52266961 -65595666 + AT_rich Low_complexity Low_complexity 1 31 0 2145 112 11 0 chr9 52266961 52267247 -65595380 + AluSg SINE Alu 1 289 -21 414 133 0 0 chr9 52267248 52267338 -65595289 + (TA)n Simple_repeat Simple_repeat 1 90 0 605 280 36 6 chr9 52268323 52268491 -65594136 + MIR SINE MIR 32 204 -58 1590 141 0 4 chr9 52268722 52268978 -65593649 + L1P4 LINE L1 5426 5680 -486 691 297 151 9 chr9 52268979 52269329 -65593298 - L2 LINE L2 -86 3227 2828 186 360 23 0 chr9 52270325 52270411 -65592216 + MIR SINE MIR 34 121 -87 2243 222 60 66 chr9 52271119 52273326 -65589301 + L1M3c LINE L1 2077 4149 -3416 321 196 18 0 chr9 52273326 52273382 -65589245 + Tigger7 DNA MER2_type 2435 2491 0 1835 143 54 54 chr9 52273384 52273918 -65588709 + L1MA9 LINE L1 5614 6280 -32 488 296 29 17 chr9 52274506 52274678 -65587949 + MLT1I LTR MaLR 102 275 -134 543 306 52 4 chr9 52274833 52275081 -65587546 - MIR SINE MIR -2 260 1 197 268 0 0 chr9 52275090 52275131 -65587496 + MIR SINE MIR 106 146 -62 365 218 178 0 chr9 52277184 52277285 -65585342 + L2 LINE L2 3195 3313 0 425 236 138 24 chr9 52277642 52277765 -65584862 + MIR SINE MIR 21 157 -105 723 239 59 50 chr9 52277783 52277832 -65584795 - MIR SINE MIR -32 230 183 1030 223 59 79 chr9 52277832 52278236 -65584391 - MSTD LTR MaLR 0 396 1 723 239 59 50 chr9 52278236 52278408 -65584219 - MIR SINE MIR -79 183 7 225 312 32 0 chr9 52278404 52278497 -65584130 + MIR SINE MIR 162 257 -5 * 1005 132 216 5 chr9 52278742 52278932 -65583695 + MER30 DNA MER1_type 1 230 0 315 0 0 0 chr9 52279370 52279405 -65583222 + (CA)n Simple_repeat Simple_repeat 1 35 0 525 238 24 34 chr9 52279819 52280001 -65582626 - MER5A DNA MER1_type -6 183 4 2165 63 0 8 chr9 52280430 52280698 -65581929 - AluY SINE Alu -5 306 41 288 286 0 80 chr9 52280738 52280850 -65581777 + L2 LINE L2 3210 3312 -1 303 325 67 0 chr9 52281361 52281481 -65581146 + L2 LINE L2 3181 3308 -5 757 175 88 53 chr9 52281632 52281860 -65580767 - MER106A DNA MER1_type 0 236 1 341 300 33 0 chr9 52281939 52282059 -65580568 + MLT1J LTR MaLR 1 124 -387 260 255 29 39 chr9 52282079 52282181 -65580446 + MLT1J LTR MaLR 76 176 -335 271 229 72 0 chr9 52282181 52282264 -65580363 + MLT1J LTR MaLR 423 511 0 26 82 0 0 chr9 52282331 52282392 -65580235 + AT_rich Low_complexity Low_complexity 1 61 0 399 73 0 0 chr9 52283097 52283152 -65579475 + (TG)n Simple_repeat Simple_repeat 1 55 0 467 262 117 77 chr9 52283442 52283885 -65578742 + MLT1L LTR MaLR 3 463 -152 319 197 0 0 chr9 52284361 52284427 -65578200 + MLT1L LTR MaLR 546 611 -4 223 369 140 0 chr9 52284644 52284802 -65577825 + MIR SINE MIR 1 181 -67 2050 162 82 15 chr9 52285239 52285640 -65576987 - MSTA LTR MaLR 0 428 1 1238 107 44 27 chr9 52285640 52285865 -65576762 - MSTA-int LTR MaLR 0 1580 1352 * 1818 122 6 16 chr9 52285863 52286174 -65576453 - MSTA-int LTR MaLR -1343 308 1 2179 144 86 10 chr9 52286174 52286570 -65576057 - MSTA LTR MaLR 0 428 3 217 205 0 0 chr9 52288788 52288827 -65573800 + CT-rich Low_complexity Low_complexity 1 39 0 2368 51 6 38 chr9 52289442 52289758 -65572869 - AluY SINE Alu -5 306 1 748 281 58 31 chr9 52290036 52290260 -65572367 - MIR SINE MIR -26 236 7 1372 243 19 74 chr9 52292583 52293056 -65569571 - MER74C LTR ERVL 0 460 14 403 297 3 22 chr9 52293810 52293966 -65568661 + LTR16A LTR ERVL 82 235 -215 389 261 0 8 chr9 52293969 52294099 -65568528 + MLT2B1 LTR ERVL 3 131 -389 337 212 4 0 chr9 52294100 52294169 -65568458 + MLT2B1 LTR ERVL 283 356 -162 2814 127 44 33 chr9 52294169 52294833 -65567794 + LTR8A LTR ERV1 1 727 0 489 240 0 0 chr9 52294840 52294936 -65567691 + MLT2B2 LTR ERVL 355 450 -65 398 270 49 78 chr9 52294992 52295196 -65567431 + LTR16A LTR ERVL 253 450 0 454 290 50 11 chr9 52295432 52295711 -65566916 + L1M4 LINE L1 3688 3977 -2169 225 349 72 0 chr9 52295937 52296020 -65566607 + L2 LINE L2 3146 3234 -38 192 77 0 0 chr9 52296622 52296648 -65565979 + (CCTA)n Simple_repeat Simple_repeat 1 26 0 381 167 42 21 chr9 52296684 52296828 -65565799 + (TCTA)n Simple_repeat Simple_repeat 4 150 0 723 295 64 22 chr9 52296863 52297297 -65565330 + MLT1K LTR MaLR 46 569 -19 245 250 152 9 chr9 52297310 52297422 -65565205 - L2 LINE L2 -195 3077 2950 501 313 100 24 chr9 52297546 52297955 -65564672 - L2 LINE L2 -785 2529 2090 970 210 0 0 chr9 52298032 52298208 -65564419 + FRAM SINE Alu 1 176 0 244 331 177 8 chr9 52298813 52298937 -65563690 + MIR SINE MIR 34 178 -84 216 67 0 0 chr9 52299551 52299581 -65563046 + (A)n Simple_repeat Simple_repeat 1 30 0 247 299 89 8 chr9 52301514 52301663 -65560964 + MIR SINE MIR 13 143 -65 234 354 13 0 chr9 52302295 52302374 -65560253 + L2 LINE L2 3193 3272 0 432 204 139 0 chr9 52303251 52303359 -65559268 - MIR3 SINE MIR -44 164 42 228 246 31 0 chr9 52304925 52304990 -65557637 + MIR SINE MIR 84 150 -112 268 291 25 0 chr9 52305304 52305383 -65557244 + MIR SINE MIR 164 244 -18 2507 87 0 0 chr9 52305812 52306122 -65556505 + AluY SINE Alu 1 310 -1 743 315 120 3 chr9 52306425 52306749 -65555878 + L2 LINE L2 2443 2804 -510 202 413 0 0 chr9 52306960 52307139 -65555488 + (CA)n Simple_repeat Simple_repeat 1 179 0 216 0 0 0 chr9 52307152 52307176 -65555451 + (CA)n Simple_repeat Simple_repeat 2 25 0 279 191 0 0 chr9 52307271 52307334 -65555293 + (CA)n Simple_repeat Simple_repeat 2 64 0 1712 206 8 30 chr9 52307444 52307817 -65554810 - MLT1A1 LTR MaLR 0 365 1 615 238 48 7 chr9 52307820 52307967 -65554660 + L2 LINE L2 3161 3313 0 258 263 53 70 chr9 52308098 52308212 -65554415 + MIR SINE MIR 81 192 -70 969 261 82 42 chr9 52309454 52309930 -65552697 - MLT1J LTR MaLR 0 511 17 336 338 22 44 chr9 52310410 52310546 -65552081 - L2 LINE L2 0 3272 3140 2038 105 22 0 chr9 52310716 52310993 -65551634 + AluSp SINE Alu 1 283 -30 731 191 0 16 chr9 52312604 52312787 -65549840 + CT-rich Low_complexity Low_complexity 1 180 0 2334 161 0 15 chr9 52314452 52314794 -65547833 + MER1B DNA MER1_type 1 337 0 225 158 0 0 chr9 52314981 52315019 -65547608 - Zaphod DNA AcHobo -15 4016 3979 790 293 87 0 chr9 52315189 52315442 -65547185 - MER115 DNA AcHobo -416 277 3 24 0 0 0 chr9 52315745 52315769 -65546858 + AT_rich Low_complexity Low_complexity 1 24 0 300 266 122 36 chr9 52316886 52317025 -65545602 + MIR SINE MIR 54 204 -58 3749 99 71 6 chr9 52317072 52317605 -65545022 - L1PA10 LINE L1 0 6168 5601 213 236 0 36 chr9 52319577 52319632 -65542995 + MIR SINE MIR 68 120 -142 502 241 29 15 chr9 52320295 52320432 -65542195 - MIR SINE MIR -73 189 51 600 293 108 51 chr9 52321416 52321472 -65541155 + L2 LINE L2 2615 2666 -647 1056 172 50 0 chr9 52321472 52321652 -65540975 - MER5A DNA MER1_type 0 189 1 600 293 108 51 chr9 52321652 52322251 -65540376 + L2 LINE L2 2666 3308 -5 1951 159 0 28 chr9 52323049 52323370 -65539257 + AluSx SINE Alu 1 312 0 268 209 45 0 chr9 52323878 52323945 -65538682 - MER94 DNA DNA -64 70 1 638 204 0 9 chr9 52324012 52324125 -65538502 + MER3 DNA MER1_type 1 112 -97 529 136 64 55 chr9 52324156 52324266 -65538361 + MER3 DNA MER1_type 99 209 0 216 0 0 0 chr9 52325113 52325137 -65537490 + (TCTCC)n Simple_repeat Simple_repeat 2 25 0 2273 165 25 2 chr9 52325570 52325977 -65536650 + L1MB2 LINE L1 5755 6170 -1 249 260 247 20 chr9 52326214 52326360 -65536267 - MIR SINE MIR -10 252 74 448 297 23 44 chr9 52326409 52326646 -65535981 - MIR SINE MIR -12 250 21 64 0 0 0 chr9 52326702 52326766 -65535861 + AT_rich Low_complexity Low_complexity 1 64 0 266 251 251 40 chr9 52328760 52328935 -65533692 + L2 LINE L2 2575 2786 -528 23 0 0 0 chr9 52328935 52328958 -65533669 + AT_rich Low_complexity Low_complexity 1 23 0 3483 107 2 0 chr9 52328958 52329417 -65533210 - L1PA13 LINE L1 -11 6152 5693 773 71 125 0 chr9 52329419 52329531 -65533096 - LTR1 LTR ERV1 -315 470 345 1671 89 78 45 chr9 52329537 52329806 -65532821 - L1PA12 LINE L1 -192 5976 5699 1263 172 65 31 chr9 52329914 52330215 -65532412 - LTR1 LTR ERV1 -534 251 1 3200 112 6 8 chr9 52330258 52330732 -65531895 - L1P4 LINE L1 -435 5726 5254 * 4965 166 9 24 chr9 52330731 52331649 -65530978 - L1P4 LINE L1 -2054 4092 3189 559 348 83 55 chr9 52331654 52332080 -65530547 + L2 LINE L2 2777 3220 -52 258 156 0 0 chr9 52332093 52332138 -65530489 + (TG)n Simple_repeat Simple_repeat 2 46 0 1959 91 0 12 chr9 52333429 52333725 -65528902 + AluSp SINE Alu 35 327 0 206 241 37 0 chr9 52334335 52334389 -65528238 + CT-rich Low_complexity Low_complexity 5 60 0 1665 176 10 10 chr9 52335751 52336046 -65526581 + AluJo SINE Alu 12 306 -6 187 309 0 0 chr9 52336119 52336174 -65526453 + L2 LINE L2 3251 3305 -8 204 158 0 0 chr9 52336191 52336229 -65526398 + GA-rich Low_complexity Low_complexity 1 38 0 221 274 0 0 chr9 52337664 52337715 -65524912 + L2 LINE L2 3040 3090 -182 475 255 42 57 chr9 52337773 52337965 -65524662 + MIR SINE MIR 74 262 0 197 351 85 0 chr9 52337973 52338067 -65524560 + L2 LINE L2 3208 3309 -4 291 286 92 17 chr9 52338422 52338541 -65524086 + MIR SINE MIR 20 147 -115 512 301 16 11 chr9 52338544 52338730 -65523897 + MIR SINE MIR 28 214 -48 209 365 94 41 chr9 52339879 52340123 -65522504 - L2 LINE L2 -14 3258 3002 303 307 81 45 chr9 52340742 52340909 -65521718 - MIR3 SINE MIR -73 135 13 228 272 105 86 chr9 52342190 52342352 -65520275 - MIR SINE MIR -50 212 48 252 296 12 0 chr9 52342729 52342810 -65519817 + MLT1L LTR MaLR 196 277 -338 230 280 42 17 chr9 52343750 52343789 -65518838 - L1MA4A LINE L1 -1 6302 6264 427 270 18 0 chr9 52343789 52343900 -65518727 - L1PB4 LINE L1 -23 6133 6021 288 253 132 52 chr9 52344164 52344338 -65518289 + L1M3 LINE L1 3995 4182 -1964 1137 292 92 15 chr9 52344477 52345361 -65517266 + L1M3 LINE L1 4480 5432 -743 4488 58 0 6 chr9 52345971 52346504 -65516123 + L1PA6 LINE L1 5618 6147 -7 233 335 113 22 chr9 52347919 52348104 -65514523 + MIR SINE MIR 34 235 -27 287 225 56 0 chr9 52349093 52349164 -65513463 - MIR SINE MIR -71 191 117 252 0 0 0 chr9 52350713 52350741 -65511886 + (CA)n Simple_repeat Simple_repeat 2 29 0 360 0 0 0 chr9 52350790 52350830 -65511797 + (TA)n Simple_repeat Simple_repeat 2 41 0 208 416 0 0 chr9 52352101 52352190 -65510437 + L2 LINE L2 2967 3055 -217 1015 71 0 0 chr9 52352663 52352789 -65509838 - AluSg/x SINE Alu -12 298 173 1349 113 6 0 chr9 52352977 52353154 -65509473 - AluSc SINE Alu -131 178 1 195 290 122 47 chr9 52353159 52353266 -65509361 + L2 LINE L2 3158 3272 0 285 315 48 42 chr9 52354532 52354697 -65507930 - MIR SINE MIR -74 188 23 290 371 70 27 chr9 52357273 52357459 -65505168 - L2 LINE L2 -10 3262 3069 243 0 0 0 chr9 52357520 52357547 -65505080 + (CA)n Simple_repeat Simple_repeat 2 28 0 239 238 109 10 chr9 52359042 52359143 -65503484 - MER103 DNA DNA -19 147 37 854 168 19 7 chr9 52359819 52359974 -65502653 + Tigger1 DNA MER2_type 1 157 -2261 * 935 117 117 58 chr9 52359963 52360168 -65502459 + Tigger1 DNA MER2_type 2202 2418 0 235 279 0 0 chr9 52360361 52360422 -65502205 - MER113 DNA MER1_type? -48 473 413 664 211 90 0 chr9 52360434 52360567 -65502060 - AluJb SINE Alu -3 309 165 401 230 71 9 chr9 52360571 52360684 -65501943 - MER113 DNA MER1_type? -121 400 281 316 318 39 16 chr9 52362069 52362198 -65500429 - MIR SINE MIR -105 157 26 2187 61 4 0 chr9 52362608 52362872 -65499755 + AluY SINE Alu 39 303 -8 1320 242 73 29 chr9 52364239 52364719 -65497908 + MLT1J LTR MaLR 3 503 -8 203 188 62 0 chr9 52365255 52365303 -65497324 - L2 LINE L2 -31 3282 3232 401 257 188 47 chr9 52365470 52365784 -65496843 - L1ME4a LINE L1 0 6121 5853 2267 111 0 0 chr9 52365784 52366082 -65496545 + AluY SINE Alu 1 298 -13 401 257 188 47 chr9 52366082 52366474 -65496153 - L1ME4a LINE L1 -268 5853 5315 314 258 101 0 chr9 52366788 52366877 -65495750 - L1ME4a LINE L1 -1311 4835 4738 1355 335 100 44 chr9 52366884 52368348 -65494279 - L2 LINE L2 -8 3264 1713 38 68 0 0 chr9 52368615 52368688 -65493939 + AT_rich Low_complexity Low_complexity 1 73 0 1269 238 92 38 chr9 52369354 52369398 -65493229 - L1ME1 LINE L1 -4 6162 6122 1834 203 86 22 chr9 52369398 52369887 -65492740 - MLT2B1 LTR ERVL 0 520 1 1269 238 92 38 chr9 52369887 52370375 -65492252 - L1ME1 LINE L1 -44 6122 5601 441 297 93 25 chr9 52370396 52370632 -65491995 - L1ME4a LINE L1 -3605 2541 2290 576 263 155 26 chr9 52370664 52371128 -65491499 - HAL1 LINE L1 -6 2501 1978 2106 107 11 0 chr9 52371507 52371809 -65490818 + AluSq SINE Alu 1 305 0 373 311 78 32 chr9 52371822 52372105 -65490522 - L2 LINE L2 -661 2653 2358 244 263 224 13 chr9 52374913 52375069 -65487558 + LTR33 LTR ERVL 28 216 -305 386 279 60 25 chr9 52375127 52375328 -65487299 + LTR33 LTR ERVL 307 514 -7 208 238 0 0 chr9 52375656 52375698 -65486929 + CT-rich Low_complexity Low_complexity 4 45 0 1814 123 0 0 chr9 52375708 52375951 -65486676 + AluSx SINE Alu 58 300 -12 2403 124 25 0 chr9 52376065 52376420 -65486207 + THE1B LTR MaLR 1 364 0 246 200 17 17 chr9 52377248 52377308 -65485319 + MLT1K LTR MaLR 525 584 -4 448 305 120 13 chr9 52377467 52377700 -65484927 - MIR SINE MIR -1 261 4 411 294 7 62 chr9 52378582 52378728 -65483899 - MIR3 SINE MIR -19 189 52 594 298 127 25 chr9 52380030 52380346 -65482281 - MLT1J2 LTR MaLR -22 428 81 3258 136 11 19 chr9 52380886 52381454 -65481173 - L1MB1 LINE L1 0 6168 5606 1368 154 63 57 chr9 52381454 52381900 -65480727 + L1MB1 LINE L1 5148 5595 -576 226 400 44 19 chr9 52381900 52382105 -65480522 + MLT1K LTR MaLR 35 244 -344 1841 158 0 11 chr9 52382125 52382436 -65480191 - AluSc SINE Alu 0 308 1 4182 277 170 21 chr9 52382455 52384287 -65478340 + L2 LINE L2 601 2706 -608 617 297 94 31 chr9 52384287 52384543 -65478084 - L2 LINE L2 -582 2732 2461 677 171 95 19 chr9 52384868 52385026 -65477601 - THE1B LTR MaLR 0 364 195 241 296 70 0 chr9 52385513 52385584 -65477043 - MER91C DNA MER1_type -64 76 1 201 339 16 0 chr9 52385926 52385988 -65476639 - L2 LINE L2 -3 3269 3207 21 57 0 0 chr9 52386045 52386080 -65476547 + AT_rich Low_complexity Low_complexity 1 35 0 1372 173 30 45 chr9 52386683 52387013 -65475614 - MLT1B LTR MaLR 0 390 66 393 222 0 0 chr9 52387048 52387129 -65475498 - MLT1B LTR MaLR -309 81 1 5769 103 38 8 chr9 52387413 52388417 -65474210 - L1PA15 LINE L1 -12 6153 5162 395 248 18 35 chr9 52390335 52390448 -65472179 - MIR3 SINE MIR 0 208 98 387 286 60 67 chr9 52390495 52390778 -65471849 - MARNA DNA Mariner -259 327 47 22 0 0 0 chr9 52390978 52391000 -65471627 + AT_rich Low_complexity Low_complexity 1 22 0 553 272 79 66 chr9 52391393 52391698 -65470929 + MLT1J LTR MaLR 200 508 -3 4214 204 57 12 chr9 52392401 52394254 -65468373 - L1MB2 LINE L1 -3 6168 4237 945 317 78 17 chr9 52394325 52395037 -65467590 - L2 LINE L2 -2 3311 2561 21 0 0 0 chr9 52396153 52396174 -65466453 + AT_rich Low_complexity Low_complexity 1 21 0 2393 223 72 71 chr9 52396176 52397283 -65465344 - L1MC4 LINE L1 0 8042 6935 1576 169 53 9 chr9 52397302 52397640 -65464987 - L1MC3 LINE L1 -2 7783 7431 935 256 27 62 chr9 52397642 52398362 -65464265 - L1MC4 LINE L1 -974 6834 6164 437 237 5 8 chr9 52398389 52398570 -65464057 - MER58B DNA MER1_type -1 340 1 595 239 109 119 chr9 52398669 52399292 -65463335 + MLT1G1 LTR MaLR 9 590 0 1978 261 132 46 chr9 52399298 52399324 -65463303 - L1MC4a LINE L1 -743 5403 5381 1923 178 0 65 chr9 52399324 52399741 -65462886 - MLT1B LTR MaLR 0 390 1 1978 261 132 46 chr9 52399741 52400794 -65461833 - L1MC4a LINE L1 -765 5381 4750 1658 183 3 36 chr9 52400794 52401100 -65461527 - AluJo SINE Alu -16 296 1 1978 261 132 46 chr9 52401100 52401885 -65460742 - L1MC4a LINE L1 -1396 4750 4034 338 273 50 20 chr9 52401896 52401995 -65460632 + L1MC4 LINE L1 6602 6703 -1339 398 234 27 27 chr9 52402535 52402646 -65459981 - MER81 DNA DNA -3 111 1 2324 159 51 39 chr9 52404590 52404849 -65457778 - MER6A DNA MER2_type -261 604 350 1991 118 13 33 chr9 52404849 52405153 -65457474 + AluY SINE Alu 1 298 -13 2324 159 51 39 chr9 52405153 52405403 -65457224 - MER6A DNA MER2_type -515 350 89 542 147 0 178 chr9 52405992 52406149 -65456478 - MER6A DNA MER2_type -476 129 1 1926 159 0 0 chr9 52406709 52407004 -65455623 - AluJb SINE Alu -17 295 1 27 29 0 0 chr9 52407117 52407151 -65455476 + AT_rich Low_complexity Low_complexity 1 34 0 862 167 0 14 chr9 52407641 52407779 -65454848 + FRAM SINE Alu 11 146 -30 222 37 0 0 chr9 52407781 52407808 -65454819 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 22 0 0 0 chr9 52407808 52407830 -65454797 + AT_rich Low_complexity Low_complexity 1 22 0 1627 222 75 45 chr9 52408122 52408227 -65454400 + MER45B DNA AcHobo 1 101 -939 2792 13 0 3 chr9 52408227 52408538 -65454089 - AluYa5 SINE Alu -1 310 1 1627 222 75 45 chr9 52408538 52408874 -65453753 + MER45B DNA AcHobo 101 455 -585 255 171 21 142 chr9 52408875 52408989 -65453638 + MLT1D LTR MaLR 1 109 -414 1765 71 0 0 chr9 52409028 52409253 -65453374 - AluY SINE Alu 0 311 87 1456 234 46 8 chr9 52409263 52409635 -65452992 + MLT1D LTR MaLR 113 498 -7 2398 204 42 14 chr9 52409642 52410052 -65452575 + MER45B DNA AcHobo 452 849 -732 2301 120 8 17 chr9 52410052 52410410 -65452217 + THE1A LTR MaLR 1 355 0 11523 96 7 7 chr9 52410410 52411990 -65450637 + THE1A-int LTR MaLR 1 1580 0 2407 104 8 6 chr9 52411990 52412344 -65450283 + THE1A LTR MaLR 1 355 0 2398 204 42 14 chr9 52412344 52412500 -65450127 + MER45B DNA AcHobo 848 1036 -4 2105 142 6 0 chr9 52414918 52415229 -65447398 - AluSq SINE Alu 0 313 1 1346 162 14 5 chr9 52415229 52415436 -65447191 - AluJb SINE Alu -14 298 87 429 47 16 0 chr9 52415562 52415626 -65447001 - L1PA4 LINE L1 -2 6153 6089 332 277 59 28 chr9 52415637 52416209 -65446418 - L1MC4a LINE L1 -1736 6072 5439 372 279 149 14 chr9 52417044 52417252 -65445375 - MIR SINE MIR 0 262 27 441 287 47 16 chr9 52417491 52417749 -65444878 - L1ME4a LINE L1 -224 5897 5632 2109 148 3 0 chr9 52420896 52421206 -65441421 - AluSx SINE Alu -1 311 1 525 106 24 12 chr9 52421275 52421360 -65441267 + AluJ/FRAM SINE Alu 220 305 -7 21 36 0 0 chr9 52421399 52421427 -65441200 + AT_rich Low_complexity Low_complexity 1 28 0 217 75 94 19 chr9 52421580 52421633 -65440994 + (TATAA)n Simple_repeat Simple_repeat 2 58 0 791 208 10 35 chr9 52423318 52423515 -65439112 - L2 LINE L2 0 3313 3122 622 201 0 60 chr9 52424245 52424379 -65438248 + AluJo SINE Alu 79 204 -108 718 221 15 98 chr9 52425557 52425697 -65436930 + MER5A DNA MER1_type 3 122 -67 6089 195 23 20 chr9 52425697 52427898 -65434729 - L1PA15 LINE L1 0 6165 3956 718 221 15 98 chr9 52427898 52427961 -65434666 + MER5A DNA MER1_type 122 189 0 1937 171 0 0 chr9 52428016 52428315 -65434312 - AluJb SINE Alu -1 311 13 355 235 24 12 chr9 52428315 52428391 -65434236 - MER5A DNA MER1_type -101 88 9 476 301 50 116 chr9 52431188 52431663 -65430964 - L2 LINE L2 0 3272 2829 930 240 119 57 chr9 52431942 52432329 -65430298 + MLT1C LTR MaLR 51 461 -6 355 152 273 0 chr9 52432709 52432808 -65429819 - LTR54 LTR ERV1 0 510 385 1111 144 60 0 chr9 52432857 52433058 -65429569 - LTR54 LTR ERV1 -295 215 3 189 107 0 0 chr9 52433155 52433183 -65429444 + (TG)n Simple_repeat Simple_repeat 1 28 0 62 36 0 0 chr9 52433297 52433380 -65429247 + AT_rich Low_complexity Low_complexity 1 83 0 375 121 0 0 chr9 52434270 52434328 -65428299 + (TC)n Simple_repeat Simple_repeat 1 58 0 220 211 0 39 chr9 52435622 52435674 -65426953 + L2 LINE L2 3264 3313 0 268 243 213 73 chr9 52436392 52436515 -65426112 - L2 LINE L2 -36 3277 3132 2319 79 24 0 chr9 52436515 52436806 -65425821 + AluY SINE Alu 1 298 -13 268 243 213 73 chr9 52436806 52436818 -65425809 - L2 LINE L2 -181 3132 3123 207 0 0 0 chr9 52436820 52436843 -65425784 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1985 131 4 0 chr9 52436843 52437117 -65425510 - AluSx SINE Alu -33 279 5 1203 243 101 17 chr9 52437441 52437857 -65424770 + MER90 LTR ERV1 1 451 -163 856 116 27 0 chr9 52437858 52438005 -65424622 + CT-rich Low_complexity Low_complexity 1 151 0 1526 197 13 20 chr9 52438005 52438305 -65424322 - AluJo SINE Alu -14 298 1 512 206 122 0 chr9 52438305 52438436 -65424191 + MER90 LTR ERV1 468 614 0 198 0 0 0 chr9 52438500 52438522 -65424105 + (T)n Simple_repeat Simple_repeat 1 22 0 206 234 0 0 chr9 52438578 52438625 -65424002 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 271 274 48 81 chr9 52438845 52438969 -65423658 - MLT1K LTR MaLR -381 207 88 2227 146 38 10 chr9 52439442 52439840 -65422787 - LTR57 LTR ERVL -2 409 1 2404 123 83 5 chr9 52439845 52440242 -65422385 + MSTA LTR MaLR 1 428 0 255 301 185 17 chr9 52440308 52440481 -65422146 + L2 LINE L2 3112 3313 0 537 224 158 0 chr9 52440946 52441129 -65421498 - MER5C DNA MER1_type -44 280 69 6552 35 1 5 chr9 52442741 52443539 -65419088 + L1PA4 LINE L1 5361 6155 0 327 317 79 0 chr9 52443600 52443701 -65418926 - MIR3 SINE MIR -54 154 46 440 250 9 9 chr9 52443713 52443821 -65418806 + MIR3 SINE MIR 92 199 -9 2027 129 31 47 chr9 52443947 52444328 -65418299 - THE1C LTR MaLR 0 375 1 228 333 33 0 chr9 52444351 52444411 -65418216 - L2 LINE L2 -50 3222 3161 498 292 146 51 chr9 52444436 52445119 -65417508 - L2 LINE L2 0 3313 2483 2166 147 23 5 chr9 52445126 52445491 -65417136 + MLT1B LTR MaLR 1 444 -23 2713 88 13 8 chr9 52445491 52445864 -65416763 + THE1C LTR MaLR 1 375 0 2166 147 23 5 chr9 52445864 52445889 -65416738 + MLT1B LTR MaLR 444 467 0 860 328 121 30 chr9 52445938 52446741 -65415886 - L2 LINE L2 -921 2393 1518 2994 152 32 6 chr9 52446742 52447269 -65415358 + MER34 LTR ERV1 2 542 0 28 29 0 0 chr9 52447421 52447456 -65415171 + AT_rich Low_complexity Low_complexity 1 35 0 1018 271 88 45 chr9 52447576 52448086 -65414541 + L1MC4a LINE L1 5542 6091 -1717 2258 97 0 19 chr9 52448086 52448394 -65414233 - AluSg SINE Alu -3 307 6 1018 271 88 45 chr9 52448394 52448572 -65414055 + L1MC4a LINE L1 6091 6260 -1548 8869 199 17 8 chr9 52448603 52451298 -65411329 - L1PA15 LINE L1 -3 6813 4063 1904 217 13 3 chr9 52451311 52451685 -65410942 - MSTB LTR MaLR -48 378 1 621 189 0 15 chr9 52451749 52451881 -65410746 + MSTC LTR MaLR 1 130 -298 7222 50 0 3 chr9 52451886 52452953 -65409674 - L1PA5 LINE L1 0 6154 5088 6497 230 11 28 chr9 52452953 52454162 -65408465 - L1PA15 LINE L1 -2723 4074 2907 2597 123 87 32 chr9 52454162 52454633 -65407994 - LOR1a LTR ERV1 0 497 1 6497 230 11 28 chr9 52454633 52455299 -65407328 - L1PA15 LINE L1 -3890 2907 2231 396 304 99 7 chr9 52455958 52456231 -65406396 + L1MC4 LINE L1 7215 7512 -530 251 345 118 43 chr9 52456656 52456978 -65405649 - L2 LINE L2 -56 3216 2871 1815 162 7 10 chr9 52457068 52457364 -65405263 + AluSx SINE Alu 1 295 -17 4065 193 11 21 chr9 52457904 52458546 -65404081 - L1PA15 LINE L1 -4538 2249 1617 3561 75 11 0 chr9 52458546 52458999 -65403628 - LTR22A LTR ERVK 0 458 1 4065 193 11 21 chr9 52458999 52459264 -65403363 - L1PA15 LINE L1 -5170 1617 1351 478 314 132 26 chr9 52459451 52459596 -65403031 + L1MC4a LINE L1 6448 6576 -1232 387 0 0 0 chr9 52459596 52459639 -65402988 + (CA)n Simple_repeat Simple_repeat 2 44 0 478 314 132 26 chr9 52459639 52459910 -65402717 + L1MC4a LINE L1 6576 6908 -900 635 296 78 18 chr9 52460677 52460961 -65401666 + L3 LINE CR1 1118 1418 -159 233 152 22 0 chr9 52461037 52461083 -65401544 + (TTCA)n Simple_repeat Simple_repeat 3 49 0 2366 92 0 3 chr9 52461285 52461590 -65401037 + AluSx SINE Alu 1 304 -8 767 365 94 25 chr9 52462091 52462785 -65399842 - L2 LINE L2 -1847 1467 726 1901 269 54 29 chr9 52463704 52464333 -65398294 + MER115 DNA AcHobo 49 693 0 274 222 0 48 chr9 52464466 52464529 -65398098 + L2 LINE L2 3246 3305 -8 2284 88 3 3 chr9 52465461 52465755 -65396872 - AluSq SINE Alu -19 294 1 236 164 66 16 chr9 52465881 52465942 -65396685 - LTR67 LTR ERVL -8 549 486 3537 160 22 34 chr9 52466469 52467183 -65395444 - L1MA6 LINE L1 -8 6292 5587 357 293 150 16 chr9 52467489 52467715 -65394912 - MIR SINE MIR 0 262 2 186 357 116 9 chr9 52467778 52467890 -65394737 + L2 LINE L2 3123 3246 -26 24 0 0 0 chr9 52468616 52468640 -65393987 + AT_rich Low_complexity Low_complexity 1 24 0 324 374 16 37 chr9 52468706 52468896 -65393731 - MER5A DNA MER1_type -3 186 1 279 0 0 0 chr9 52469197 52469228 -65393399 + (TG)n Simple_repeat Simple_repeat 2 32 0 1103 113 6 0 chr9 52469276 52469444 -65393183 - MSTA LTR MaLR -259 169 1 896 314 48 56 chr9 52470060 52470522 -65392105 + L2 LINE L2 825 1282 -2032 239 385 68 0 chr9 52471723 52471871 -65390756 + L2 LINE L2 1275 1432 -1882 2060 136 14 70 chr9 52472065 52472506 -65390121 + MSTB1 LTR MaLR 1 416 -16 26 0 0 0 chr9 52472547 52472573 -65390054 + AT_rich Low_complexity Low_complexity 1 26 0 351 298 147 22 chr9 52472692 52473147 -65389480 - MLT1L LTR MaLR -13 602 37 424 235 0 0 chr9 52473234 52473315 -65389312 - L2 LINE L2 0 3313 3233 316 283 4 13 chr9 52473327 52473486 -65389141 - HAL1b LINE L1 -143 2364 819 1115 135 34 51 chr9 52473566 52473803 -65388824 - THE1C LTR MaLR 0 375 143 656 231 106 26 chr9 52473906 52474218 -65388409 - HAL1 LINE L1 -1058 1449 1113 355 321 30 8 chr9 52474288 52474422 -65388205 + HAL1 LINE L1 744 880 -1627 2006 137 25 3 chr9 52474528 52474850 -65387777 + L1PA15 LINE L1 5831 6159 -6 621 115 0 0 chr9 52475323 52475410 -65387217 + AluSp/q SINE Alu 210 296 -17 1533 230 142 23 chr9 52475761 52476643 -65385984 - Charlie2 DNA MER1_type -16 2846 1860 685 230 167 16 chr9 52476654 52476911 -65385716 - Charlie2 DNA MER1_type -2540 322 27 833 203 22 22 chr9 52477462 52477644 -65384983 - LTR32 LTR ERVL -5 466 285 369 106 167 0 chr9 52477645 52477711 -65384916 - LTR32 LTR ERVL -383 88 12 268 250 35 62 chr9 52477707 52477851 -65384776 + MER112 DNA MER1_type 113 252 -8 * 30 27 0 0 chr9 52477878 52477915 -65384712 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr9 52478824 52478848 -65383779 + AT_rich Low_complexity Low_complexity 1 24 0 418 254 123 29 chr9 52478900 52479038 -65383589 + MER5B DNA MER1_type 28 178 0 517 225 174 0 chr9 52479049 52479204 -65383423 + MER5A DNA MER1_type 4 189 0 233 168 50 154 chr9 52479474 52479694 -65382933 - L1M4 LINE L1 -5509 1033 837 364 207 22 7 chr9 52479766 52479867 -65382760 - L1M4 LINE L1 -5746 900 611 2481 73 0 0 chr9 52479868 52480171 -65382456 - AluY SINE Alu -6 305 3 316 233 48 10 chr9 52480559 52480662 -65381965 - MLT1J2 LTR MaLR 0 450 344 484 246 3 72 chr9 52480799 52481005 -65381622 - MLT1J1 LTR MaLR -237 213 16 512 176 92 142 chr9 52481068 52481329 -65381298 - HsTC2 DNA Tc2 -30 1868 1621 2217 60 17 10 chr9 52481331 52481630 -65380997 - L1PA7 LINE L1 0 6154 5854 2276 155 8 0 chr9 52484468 52484830 -65377797 + MLT1A1 LTR MaLR 1 365 0 318 355 53 21 chr9 52485036 52485225 -65377402 + MIR SINE MIR 5 199 -63 280 296 70 7 chr9 52485326 52485468 -65377159 + MLT1K LTR MaLR 146 296 -292 207 188 0 42 chr9 52486338 52486386 -65376241 + (TTA)n Simple_repeat Simple_repeat 2 47 0 950 172 0 13 chr9 52487261 52487418 -65375209 + FRAM SINE Alu 1 155 -11 701 154 88 50 chr9 52487542 52487724 -65374903 + MER53 DNA DNA 1 189 0 206 186 23 0 chr9 52489092 52489135 -65373492 + (TAA)n Simple_repeat Simple_repeat 1 44 0 213 39 0 0 chr9 52489835 52489861 -65372766 + (TG)n Simple_repeat Simple_repeat 2 27 0 30 0 0 0 chr9 52489865 52489895 -65372732 + AT_rich Low_complexity Low_complexity 1 30 0 342 0 0 0 chr9 52490892 52490930 -65371697 + (CA)n Simple_repeat Simple_repeat 1 38 0 253 214 0 0 chr9 52491633 52491689 -65370938 + (TG)n Simple_repeat Simple_repeat 1 56 0 740 323 38 43 chr9 52491976 52492348 -65370279 + LTR16B LTR ERVL 1 370 -94 293 203 0 16 chr9 52492364 52492428 -65370199 - MER20 DNA MER1_type -156 63 1 254 318 35 82 chr9 52492444 52492614 -65370013 + L2 LINE L2 3054 3215 -57 225 287 7 14 chr9 52492658 52492750 -65369877 + GA-rich Low_complexity Low_complexity 1 91 0 2114 136 3 3 chr9 52493369 52493678 -65368949 + AluSx SINE Alu 1 309 -3 192 200 40 93 chr9 52494130 52494205 -65368422 - MER5A DNA MER1_type 0 189 119 1099 258 3 32 chr9 52494231 52494545 -65368082 - L1ME1 LINE L1 -15 6151 5847 269 311 14 14 chr9 52494621 52494695 -65367932 - MIR3 SINE MIR -46 162 89 215 245 128 32 chr9 52495426 52495520 -65367107 - MIR SINE MIR -68 140 38 217 321 46 30 chr9 52496292 52496423 -65366204 + L2 LINE L2 2922 3054 -218 507 351 92 47 chr9 52497864 52498046 -65364581 + L2 LINE L2 1350 1522 -1792 2055 145 7 0 chr9 52498046 52498350 -65364277 - AluSx SINE Alu -6 306 1 507 351 92 47 chr9 52498350 52499091 -65363536 + L2 LINE L2 1522 2315 -999 272 376 74 0 chr9 52499131 52499280 -65363347 + L2 LINE L2 2946 3105 -167 5730 173 52 7 chr9 52499447 52500629 -65361998 + Charlie1a DNA MER1_type 7 1241 -214 1003 179 179 22 chr9 52500629 52500993 -65361634 - LTR37A LTR ERV1 0 426 6 875 188 0 22 chr9 52500997 52501220 -65361407 + Charlie1a DNA MER1_type 1238 1455 0 437 343 211 25 chr9 52501459 52502597 -65360030 + L2 LINE L2 200 1548 -1766 838 271 38 23 chr9 52502617 52502883 -65359744 - LTR33 LTR ERVL -251 270 1 1310 107 130 23 chr9 52504564 52504779 -65357848 - AluJb SINE Alu -2 310 73 664 260 45 45 chr9 52504917 52505140 -65357487 - MIR SINE MIR -32 230 8 1649 148 4 7 chr9 52505505 52505782 -65356845 - L1PB3 LINE L1 0 6154 5879 23 54 0 0 chr9 52506075 52506112 -65356515 + AT_rich Low_complexity Low_complexity 1 37 0 2111 174 35 22 chr9 52508682 52509136 -65353491 - MLT1C LTR MaLR -7 460 1 407 313 55 5 chr9 52509228 52509445 -65353182 + HAL1 LINE L1 1363 1590 -917 1652 244 75 32 chr9 52509457 52510113 -65352514 - L1ME2 LINE L1 0 6164 5481 1033 137 0 28 chr9 52510113 52510295 -65352332 - L1PA13 LINE L1 -2 6161 5985 3164 84 5 0 chr9 52510302 52510742 -65351885 + THE1A-int LTR MaLR 1139 1580 0 2759 71 11 0 chr9 52510742 52511093 -65351534 + THE1A LTR MaLR 1 355 0 13015 225 23 44 chr9 52511097 52517200 -65345427 - L1PA12 LINE L1 -1823 5761 13 582 240 11 17 chr9 52517214 52517496 -65345131 - L1ME2 LINE L1 -696 5468 5189 253 281 88 9 chr9 52517495 52517609 -65345018 + HAL1 LINE L1 1570 1692 -815 * 2143 174 98 33 chr9 52517879 52518389 -65344238 - MER67A LTR ERV1 0 543 1 283 267 0 0 chr9 52518515 52518590 -65344037 + HAL1 LINE L1 2074 2148 -359 2136 118 23 13 chr9 52518824 52519129 -65343498 + AluSg SINE Alu 1 308 -2 263 346 45 39 chr9 52519668 52519824 -65342803 + MIR3 SINE MIR 10 166 -42 2348 92 3 0 chr9 52519909 52520201 -65342426 + AluSx SINE Alu 1 293 -19 277 299 0 93 chr9 52520348 52520455 -65342172 + L2 LINE L2 3212 3308 -5 210 143 0 0 chr9 52521136 52521171 -65341456 + (GAAA)n Simple_repeat Simple_repeat 3 37 0 20394 28 8 0 chr9 52521555 52524772 -65337855 + L1PA4 LINE L1 2937 6162 0 30 45 0 0 chr9 52525175 52525219 -65337408 + AT_rich Low_complexity Low_complexity 1 44 0 1282 224 43 30 chr9 52527256 52527693 -65334934 - HsTC2 DNA Tc2 0 1900 1282 226 244 233 0 chr9 52527692 52527778 -65334849 - HsTC2 DNA Tc2 -1757 141 36 * 1778 155 45 0 chr9 52527985 52528275 -65334352 + MER1B DNA MER1_type 37 339 0 284 323 73 0 chr9 52529453 52529549 -65333078 - MIR SINE MIR -132 130 28 2378 92 3 16 chr9 52529911 52530227 -65332400 - AluSx SINE Alu 0 312 1 426 253 0 0 chr9 52531744 52531831 -65330796 + MIR3 SINE MIR 75 161 -47 1874 247 13 17 chr9 52532384 52532861 -65329766 + MLT1F LTR MaLR 68 542 0 26 30 0 0 chr9 52533591 52533624 -65329003 + AT_rich Low_complexity Low_complexity 1 33 0 961 287 108 25 chr9 52535211 52536471 -65326156 + L1ME3A LINE L1 3713 5093 -1053 1093 140 32 16 chr9 52536485 52536668 -65325959 - MLT1A1 LTR MaLR -2 363 178 1502 212 85 120 chr9 52536668 52537653 -65324974 - LTR1B LTR ERV1 -1 1019 1 9256 190 28 48 chr9 52537653 52540822 -65321805 - HUERS-P2 LTR ERV1 -13 3075 75 429 289 8 8 chr9 52540922 52541043 -65321584 - LTR28 LTR ERV1 0 1020 900 1437 208 79 117 chr9 52541125 52541900 -65320727 - LTR1B LTR ERV1 -81 745 1 757 223 43 5 chr9 52541900 52542073 -65320554 - MLT1A1 LTR MaLR -185 180 1 691 319 59 9 chr9 52542074 52542582 -65320045 + L1ME3A LINE L1 5108 5642 -520 307 53 0 0 chr9 52542582 52542620 -65320007 + MLT1A1 LTR MaLR 259 296 -69 324 276 63 20 chr9 52542625 52542874 -65319753 + L1ME3A LINE L1 5666 5968 -202 2582 163 19 46 chr9 52543190 52543729 -65318898 + L1MC1 LINE L1 5802 6325 -8 1057 250 133 60 chr9 52543766 52544278 -65318349 + HAL1b LINE L1 392 865 -483 459 35 0 0 chr9 52544278 52544335 -65318292 + (CA)n Simple_repeat Simple_repeat 2 58 0 1057 250 133 60 chr9 52544335 52544710 -65317917 + HAL1b LINE L1 865 1344 -4 603 293 207 21 chr9 52545144 52545482 -65317145 - L2 LINE L2 -1 3312 2912 * 655 291 10 68 chr9 52545455 52545751 -65316876 - L2 LINE L2 -848 2466 2188 621 274 65 12 chr9 52547482 52547650 -65314977 + MER5B DNA MER1_type 1 177 -1 54 91 0 0 chr9 52547989 52548055 -65314572 + AT_rich Low_complexity Low_complexity 1 66 0 947 191 83 113 chr9 52548071 52548433 -65314194 + MLT1A1 LTR MaLR 15 365 0 969 307 37 15 chr9 52549467 52549877 -65312750 + LTR16A LTR ERVL 26 444 -6 223 178 0 0 chr9 52550100 52550145 -65312482 + (TTATA)n Simple_repeat Simple_repeat 5 49 0 697 187 35 29 chr9 52550215 52550386 -65312241 - MLT1E LTR MaLR -421 172 1 3649 216 13 37 chr9 52550495 52550954 -65311673 - MER45B DNA AcHobo -192 848 379 2146 119 3 0 chr9 52550954 52551247 -65311380 - AluSx SINE Alu -18 294 1 3649 216 13 37 chr9 52551247 52551518 -65311109 - MER45B DNA AcHobo -661 379 140 2322 169 24 21 chr9 52551518 52551716 -65310911 + MSTB LTR MaLR 1 197 -229 2210 106 0 13 chr9 52551716 52552018 -65310609 + AluSq SINE Alu 1 298 -15 2322 169 24 21 chr9 52552018 52552244 -65310383 + MSTB LTR MaLR 197 426 0 3649 216 13 37 chr9 52552244 52552381 -65310246 - MER45B DNA AcHobo -900 140 1 508 245 27 20 chr9 52552383 52552530 -65310097 + MLT1F LTR MaLR 340 487 -55 4081 158 17 9 chr9 52552637 52553401 -65309226 + L1MB8 LINE L1 5409 6178 0 14391 142 13 13 chr9 52554345 52556762 -65305865 + Tigger1 DNA MER2_type 1 2418 0 255 260 62 10 chr9 52557032 52557128 -65305499 + L2 LINE L2 3158 3258 -14 296 324 39 29 chr9 52558419 52558521 -65304106 + MIR3 SINE MIR 85 187 -21 587 286 70 5 chr9 52558604 52558789 -65303838 + MIR SINE MIR 8 204 -58 198 299 30 60 chr9 52558893 52558960 -65303667 - L2 LINE L2 -81 3191 3127 269 240 40 0 chr9 52560497 52560572 -65302055 + MIR SINE MIR 185 262 0 416 330 63 0 chr9 52560855 52561009 -65301618 - MIR SINE MIR -64 144 30 1925 58 0 0 chr9 52563211 52563451 -65299176 + L1PA6 LINE L1 5912 6151 -3 207 343 41 0 chr9 52564379 52564452 -65298175 - MIR SINE MIR -158 104 29 674 254 11 6 chr9 52565114 52565291 -65297336 - LTR16C LTR ERVL 0 491 314 229 174 0 0 chr9 52565324 52565370 -65297257 + MER5C DNA MER1_type 80 125 -199 212 164 229 0 chr9 52565389 52565450 -65297177 + MER5C DNA MER1_type 226 300 -24 6438 202 27 17 chr9 52565460 52565687 -65296940 - L1 LINE L1 -1014 5132 4909 1452 191 7 11 chr9 52565687 52565990 -65296637 - AluJo SINE Alu 0 302 1 6438 202 27 17 chr9 52565990 52567384 -65295243 - L1 LINE L1 -1237 4909 3461 * 6763 147 111 19 chr9 52567383 52568642 -65293985 + L1MC1 LINE L1 913 2326 -4100 1721 184 6 16 chr9 52568642 52568957 -65293670 + AluJo SINE Alu 1 312 0 6763 147 111 19 chr9 52568957 52569177 -65293450 + L1MC1 LINE L1 2326 2524 -3902 434 229 0 10 chr9 52569198 52569294 -65293333 + U13 snRNA snRNA 1 95 -9 10205 225 21 22 chr9 52569316 52573048 -65289579 + L1MC1 LINE L1 2552 6279 -334 3015 239 67 56 chr9 52573082 52573433 -65289194 + L1ME LINE L1 3338 3684 -2462 185 0 0 39 chr9 52573433 52573459 -65289168 + (TAA)n Simple_repeat Simple_repeat 2 26 0 3015 239 67 56 chr9 52573459 52574357 -65288270 + L1ME LINE L1 3684 4601 -1545 2344 181 62 42 chr9 52574361 52574859 -65287768 + MLT2B2 LTR ERVL 1 508 -7 2458 227 34 21 chr9 52574859 52574972 -65287655 + L1ME LINE L1 4600 4710 -1456 2086 132 18 34 chr9 52574972 52575352 -65287275 - THE1C LTR MaLR 0 375 2 2458 227 34 21 chr9 52575352 52576358 -65286269 + L1ME LINE L1 4710 5725 -441 1050 248 48 13 chr9 52576364 52576679 -65285948 + L1MCc LINE L1 20 345 -6078 3550 7 12 2 chr9 52576909 52577318 -65285309 - L1PA3 LINE L1 -1 6154 5742 2274 12 0 0 chr9 52577319 52577571 -65285056 + L1PA3 LINE L1 5491 5742 -413 322 243 17 6 chr9 52578208 52578395 -65284232 + GA-rich Low_complexity Low_complexity 1 189 0 2325 98 0 3 chr9 52581466 52581763 -65280864 + AluSg SINE Alu 1 296 -14 518 321 49 11 chr9 52581763 52581947 -65280680 - MLT1J LTR MaLR -116 395 205 705 308 41 34 chr9 52581959 52582075 -65280552 - LTR33 LTR ERVL -22 499 385 4018 111 53 2 chr9 52582075 52582678 -65279949 - MER41B LTR ERV1 -1 634 1 705 308 41 34 chr9 52582678 52582853 -65279774 - LTR33 LTR ERVL -136 385 206 2568 101 28 8 chr9 52582999 52583356 -65279271 - THE1B LTR MaLR 0 364 1 503 316 13 19 chr9 52583356 52583514 -65279113 - LTR33 LTR ERVL -347 174 18 1861 176 3 0 chr9 52585736 52586037 -65276590 + AluSx SINE Alu 1 302 -10 195 146 0 0 chr9 52586588 52586629 -65275998 + (T)n Simple_repeat Simple_repeat 1 41 0 225 94 0 0 chr9 52586724 52586756 -65275871 + (TTA)n Simple_repeat Simple_repeat 1 32 0 589 215 174 0 chr9 52586806 52586955 -65275672 + MER5A DNA MER1_type 9 183 -6 1570 117 35 0 chr9 52587974 52588230 -65274397 - L1MA5A LINE L1 -7 6290 6026 231 89 22 22 chr9 52588243 52588288 -65274339 + L1MA5A LINE L1 5942 5986 -311 23 0 0 0 chr9 52588747 52588770 -65273857 + AT_rich Low_complexity Low_complexity 1 23 0 325 320 84 17 chr9 52589202 52589380 -65273247 - LTR33 LTR ERVL 0 521 332 1389 241 63 29 chr9 52590992 52591436 -65271191 - MLT1C LTR MaLR -3 464 6 238 241 51 38 chr9 52592323 52592402 -65270225 - Charlie8 DNA MER1_type -989 1428 1349 292 286 124 68 chr9 52592777 52592938 -65269689 + MIR3 SINE MIR 38 207 -1 263 256 22 54 chr9 52593045 52593164 -65269463 - MIR SINE MIR -61 147 37 326 202 76 34 chr9 52593282 52593401 -65269226 - L1ME1 LINE L1 -6 6160 6037 43889 38 3 2 chr9 52593498 52599645 -65262982 - L1PA3 LINE L1 -2 6153 7 1671 174 34 21 chr9 52599726 52600007 -65262620 + LTR24 LTR ERV1 1 288 -179 1986 123 0 52 chr9 52600007 52600317 -65262310 + AluSx SINE Alu 1 294 -18 1671 174 34 21 chr9 52600317 52600363 -65262264 + LTR24 LTR ERV1 288 332 -135 957 174 9 55 chr9 52600750 52600968 -65261659 - MER3 DNA MER1_type -1 208 1 799 179 39 0 chr9 52601617 52601773 -65260854 + LTR24 LTR ERV1 306 467 0 3046 238 80 37 chr9 52601780 52602432 -65260195 - L1MEc LINE L1 -5312 1084 373 635 75 11 0 chr9 52602432 52602526 -65260101 + (TC)n Simple_repeat Simple_repeat 2 96 0 3046 238 80 37 chr9 52602526 52602874 -65259753 - L1MEc LINE L1 -6023 373 41 315 331 13 32 chr9 52603372 52603529 -65259098 + L1MC/D LINE L1 5 158 -5961 347 286 53 45 chr9 52603753 52603886 -65258741 + L1MC/D LINE L1 425 558 -5561 709 301 101 27 chr9 52603895 52604301 -65258326 + L1MC/D LINE L1 5324 5759 -2032 554 265 69 38 chr9 52604274 52604667 -65257960 + L1MEd LINE L1 2125 2529 -3600 * 887 285 54 14 chr9 52604777 52605054 -65257573 + MLT1J LTR MaLR 81 368 -143 227 167 42 0 chr9 52606428 52606476 -65256151 + MLT1J LTR MaLR 425 474 -37 535 264 72 34 chr9 52606546 52606811 -65255816 + L1ME3A LINE L1 5674 5948 -222 1155 248 99 53 chr9 52606868 52607361 -65255266 + MLT2B1 LTR ERVL 5 520 0 294 250 60 35 chr9 52608426 52608542 -65254085 - MIR SINE MIR -12 250 132 23 54 0 0 chr9 52609695 52609732 -65252895 + AT_rich Low_complexity Low_complexity 1 37 0 354 156 0 0 chr9 52609934 52609998 -65252629 + (CA)n Simple_repeat Simple_repeat 2 65 0 249 218 230 23 chr9 52611493 52611580 -65251047 - MIR3 SINE MIR -8 200 96 1213 199 135 18 chr9 52611627 52611954 -65250673 - MLT1A1 LTR MaLR 0 365 1 247 133 0 67 chr9 52612151 52612211 -65250416 - L1MC4 LINE L1 -1339 6703 6648 1026 65 0 0 chr9 52612234 52612373 -65250254 + (TC)n Simple_repeat Simple_repeat 2 140 0 486 261 30 37 chr9 52612373 52612507 -65250120 - MIR SINE MIR -124 138 6 617 273 78 52 chr9 52612837 52613398 -65249229 + L1MEd LINE L1 978 1553 -4863 364 310 57 16 chr9 52613910 52614163 -65248464 + L1MEd LINE L1 2331 2597 -3829 370 185 92 123 chr9 52614327 52614587 -65248040 - L1M4 LINE L1 -3047 3099 2848 286 172 35 17 chr9 52614636 52614694 -65247933 - L2 LINE L2 -68 3245 3187 341 301 46 7 chr9 52614824 52614977 -65247650 - MER103 DNA DNA 0 166 8 558 292 128 5 chr9 52615108 52615327 -65247300 + LTR16C LTR ERVL 150 395 -96 332 132 91 8 chr9 52615626 52615747 -65246880 + (TA)n Simple_repeat Simple_repeat 1 131 0 579 63 13 0 chr9 52616197 52616276 -65246351 - MADE1 DNA Mariner 0 80 1 2252 106 20 0 chr9 52616327 52616630 -65245997 + AluSx SINE Alu 1 309 -3 422 299 49 62 chr9 52618178 52618402 -65244225 + MIR SINE MIR 7 227 -35 549 319 75 11 chr9 52618652 52618974 -65243653 + MLT1I LTR MaLR 68 409 0 853 169 0 19 chr9 52619580 52619740 -65242887 - L1PA10 LINE L1 -2 6166 6010 737 173 0 43 chr9 52620156 52620295 -65242332 - MER44D DNA MER2_type -206 403 1 184 205 0 0 chr9 52620298 52620337 -65242290 + L2 LINE L2 3275 3313 0 253 230 108 0 chr9 52620478 52620552 -65242075 - MER96 DNA MER1_type? -92 83 2 200 132 0 26 chr9 52620902 52620940 -65241687 + (CAATT)n Simple_repeat Simple_repeat 4 40 0 494 345 78 4 chr9 52622161 52622393 -65240234 + MIR SINE MIR 14 262 0 495 211 83 0 chr9 52622486 52622619 -65240008 - LTR16C LTR ERVL -3 488 345 1130 201 207 11 chr9 52622633 52622991 -65239636 - MER63B DNA MER1_type -8 428 1 1228 244 14 11 chr9 52623265 52623618 -65239009 - L1MD3 LINE L1 -3 7992 7639 761 148 45 45 chr9 52623605 52623668 -65238959 + L1MC4a LINE L1 7210 7272 -536 * 1864 211 50 45 chr9 52623668 52624185 -65238442 + MLT2B1 LTR ERVL 1 520 0 761 148 45 45 chr9 52624185 52624297 -65238330 + L1MC4a LINE L1 7271 7385 -423 21 36 0 0 chr9 52624303 52624331 -65238296 + AT_rich Low_complexity Low_complexity 1 28 0 792 42 0 0 chr9 52624331 52624427 -65238200 - L1PA5 LINE L1 -7 6147 6052 1214 32 13 0 chr9 52624427 52624582 -65238045 + L1PA6 LINE L1 5703 5859 -295 1003 236 31 84 chr9 52625444 52625571 -65237056 - L1MC5 LINE L1 -893 6915 6783 2157 129 10 0 chr9 52625571 52625865 -65236762 - AluSx SINE Alu -15 297 1 1003 236 31 84 chr9 52625865 52626296 -65236331 - L1MC5 LINE L1 -1025 6783 6476 213 258 0 0 chr9 52626399 52626465 -65236162 + (TATATG)n Simple_repeat Simple_repeat 2 67 0 215 136 45 0 chr9 52626507 52626551 -65236076 + (TATATG)n Simple_repeat Simple_repeat 3 48 0 21 0 0 0 chr9 52626656 52626677 -65235950 + AT_rich Low_complexity Low_complexity 1 21 0 188 425 19 0 chr9 52627066 52627172 -65235455 + L2 LINE L2 3097 3204 -68 386 354 163 30 chr9 52627675 52628202 -65234425 + L2 LINE L2 2431 3026 -246 342 363 40 0 chr9 52628294 52628418 -65234209 + L2 LINE L2 3185 3313 0 280 263 29 66 chr9 52629246 52629383 -65233244 + MIR3 SINE MIR 12 143 -65 2579 81 5 86 chr9 52629648 52629719 -65232908 - THE1C LTR MaLR 0 375 300 1996 131 3 37 chr9 52629719 52630016 -65232611 - AluSq SINE Alu -26 287 1 2579 81 5 86 chr9 52630016 52630352 -65232275 - THE1C LTR MaLR -75 300 1 30 45 0 0 chr9 52630846 52630890 -65231737 + AT_rich Low_complexity Low_complexity 1 44 0 435 318 39 13 chr9 52630937 52631091 -65231536 + MIR SINE MIR 2 159 -103 419 271 0 19 chr9 52631798 52631905 -65230722 + MIR SINE MIR 110 214 -48 202 339 0 0 chr9 52632142 52632198 -65230429 + L2 LINE L2 3208 3263 -9 483 222 0 0 chr9 52635664 52635754 -65226873 + MER58 DNA MER1_type 1 90 -125 736 239 0 41 chr9 52635776 52635994 -65226633 + L1MB8 LINE L1 1 209 -6650 1206 108 0 0 chr9 52635994 52636151 -65226476 - AluSx SINE Alu -155 157 1 2111 223 51 40 chr9 52636152 52636808 -65225819 + L1MB8 LINE L1 388 1078 -5781 1742 218 48 48 chr9 52636811 52637161 -65225466 + L1MB8 LINE L1 3213 3565 -3392 13486 38 23 0 chr9 52637161 52639552 -65223075 + L1PA5 LINE L1 3728 6143 -11 1742 218 48 48 chr9 52639552 52639825 -65222802 + L1MB8 LINE L1 3564 3836 -3121 330 200 0 0 chr9 52639855 52639920 -65222707 + Tigger5 DNA MER2_type 2259 2323 0 7266 101 3 1 chr9 52639959 52640998 -65221629 + THE1A-int LTR MaLR 540 1580 0 1866 101 18 0 chr9 52640998 52641276 -65221351 + THE1A LTR MaLR 1 283 -72 2652 234 88 29 chr9 52641289 52641396 -65221231 + L1MB8 LINE L1 4057 4156 -2801 1946 141 11 3 chr9 52641396 52641679 -65220948 + AluSx SINE Alu 10 294 -18 2652 234 88 29 chr9 52641679 52642599 -65220028 + L1MB8 LINE L1 4156 5145 -1812 2324 161 68 31 chr9 52642621 52643163 -65219464 - L1MA8 LINE L1 -12 6279 5718 3748 195 40 29 chr9 52643180 52645007 -65217620 + L1MB8 LINE L1 5137 6984 -5 286 235 0 0 chr9 52645070 52645138 -65217489 + MER58 DNA MER1_type 2351 2418 -2 1794 93 8 4 chr9 52645725 52645987 -65216640 - AluSx SINE Alu 0 307 45 1127 43 0 0 chr9 52647096 52647235 -65215392 - L1PA4 LINE L1 0 6155 6017 260 361 7 14 chr9 52647358 52647502 -65215125 - MIR3 SINE MIR -63 145 3 722 201 150 48 chr9 52647790 52648084 -65214543 - MER33 DNA MER1_type 0 324 1 1269 254 80 19 chr9 52648421 52648846 -65213781 - L1ME3A LINE L1 -41 6129 5679 1097 231 121 38 chr9 52648933 52649353 -65213274 + MLT1D LTR MaLR 6 460 -45 2023 108 7 7 chr9 52649356 52649643 -65212984 + AluSc SINE Alu 1 287 -22 21 0 0 0 chr9 52649791 52649812 -65212815 + AT_rich Low_complexity Low_complexity 1 21 0 900 216 48 0 chr9 52649846 52650013 -65212614 + FRAM SINE Alu 1 172 -4 4069 158 69 7 chr9 52650226 52651066 -65211561 - L1MB4 LINE L1 0 6180 5289 22 0 0 0 chr9 52651641 52651663 -65210964 + AT_rich Low_complexity Low_complexity 1 22 0 14970 41 4 0 chr9 52651663 52654254 -65208373 - L1PA5 LINE L1 -7 6147 3550 9389 50 5 0 chr9 52654354 52655612 -65207015 - L1P LINE L1 -1946 4200 2937 4627 115 1 0 chr9 52655649 52656353 -65206274 - L1P LINE L1 -5441 705 1 490 158 8 83 chr9 52656611 52656744 -65205883 + MLT1C LTR MaLR 1 123 -344 1387 167 20 29 chr9 52656744 52656989 -65205638 + AluJb SINE Alu 1 243 -69 1061 204 78 78 chr9 52657004 52657361 -65205266 + MLT1C LTR MaLR 111 467 0 269 211 4 56 chr9 52657601 52657709 -65204918 + L1MC3 LINE L1 7700 7785 0 300 350 31 11 chr9 52658302 52658562 -65204065 + HAL1b LINE L1 413 677 -671 363 250 23 6 chr9 52658732 52658908 -65203719 + (TA)n Simple_repeat Simple_repeat 1 179 0 512 338 33 0 chr9 52659000 52659151 -65203476 + L2 LINE L2 87 242 -3072 29780 119 11 45 chr9 52659166 52665538 -65197089 - L1PA7 LINE L1 -1 6153 12 584 328 51 27 chr9 52665545 52665597 -65197030 + L2 LINE L2 222 271 -3043 510 90 26 0 chr9 52665597 52665675 -65196952 - MADE1 DNA Mariner 0 80 1 584 328 51 27 chr9 52665675 52665878 -65196749 + L2 LINE L2 271 483 -2831 397 218 11 0 chr9 52665878 52665965 -65196662 + L2 LINE L2 617 704 -2610 855 206 36 0 chr9 52665968 52666162 -65196465 + MER3 DNA MER1_type 9 209 0 3592 264 200 49 chr9 52666169 52668085 -65194542 + L2 LINE L2 704 2909 -405 9905 160 23 4 chr9 52668101 52670371 -65192256 + L1MA3 LINE L1 20 2340 -5225 3963 162 22 5 chr9 52670369 52671573 -65191054 + L1MA3 LINE L1 3016 4240 -3325 * 7110 145 29 16 chr9 52671576 52674011 -65188616 + L1MA3 LINE L1 5251 7721 -3 25 0 0 0 chr9 52674011 52674036 -65188591 + AT_rich Low_complexity Low_complexity 1 25 0 2242 95 0 0 chr9 52674036 52674320 -65188307 - AluSg SINE Alu -23 287 4 654 275 60 92 chr9 52674344 52674744 -65187883 + L2 LINE L2 2926 3312 -1 337 92 0 31 chr9 52674747 52674812 -65187815 + (GAAA)n Simple_repeat Simple_repeat 2 64 0 407 233 111 38 chr9 52674905 52675167 -65187460 + L1MEd LINE L1 903 1183 -4936 225 202 109 76 chr9 52675319 52675438 -65187189 + L1MEd LINE L1 1256 1378 -4753 * 1071 159 68 14 chr9 52675422 52675642 -65186985 - L1M4 LINE L1 -624 6361 6130 * 15390 221 36 15 chr9 52675638 52678183 -65184444 - L1PA15 LINE L1 -1 6815 4326 3510 74 58 0 chr9 52678183 52678668 -65183959 - L1PA8 LINE L1 0 6172 5660 15390 221 36 15 chr9 52678668 52680732 -65181895 - L1PA15 LINE L1 -2490 4326 2047 1601 208 23 10 chr9 52680732 52681040 -65181587 - AluJo SINE Alu 0 312 1 15390 221 36 15 chr9 52681040 52681859 -65180768 - L1PA15 LINE L1 -4769 2047 1247 4786 214 84 43 chr9 52681867 52683393 -65179234 - L1M4 LINE L1 -821 6136 4548 577 234 60 12 chr9 52683372 52683539 -65179088 - L1M4 LINE L1 -6673 186 12 * 439 300 160 13 chr9 52683546 52683933 -65178694 - L1ME3 LINE L1 -336 5826 5383 432 234 58 140 chr9 52684008 52684138 -65178489 - L1ME3 LINE L1 -823 5323 5184 405 0 0 0 chr9 52684138 52684183 -65178444 + (TG)n Simple_repeat Simple_repeat 2 46 0 432 234 58 140 chr9 52684183 52684204 -65178423 - L1ME3 LINE L1 -962 5184 5163 1125 113 0 0 chr9 52684204 52684363 -65178264 - L1PA10 LINE L1 -11 6157 5999 432 234 58 140 chr9 52684363 52684488 -65178139 - L1ME3 LINE L1 -983 5163 5069 1585 276 106 53 chr9 52684504 52684826 -65177801 - L1ME3 LINE L1 -1048 5098 4795 3410 72 9 5 chr9 52684826 52685268 -65177359 + MLT2A1 LTR ERVL 1 444 0 1585 276 106 53 chr9 52685268 52686723 -65175904 - L1ME3 LINE L1 -1351 4795 3191 1923 136 4 0 chr9 52686723 52686995 -65175632 - AluSg SINE Alu -16 294 22 1585 276 106 53 chr9 52686995 52687307 -65175320 - L1ME3 LINE L1 -2955 3191 2897 1746 180 51 51 chr9 52687564 52687958 -65174669 - MSTD LTR MaLR 0 396 3 4972 105 7 1 chr9 52688540 52689271 -65173356 - L1MA1 LINE L1 -10 6292 5558 632 264 33 47 chr9 52689309 52689521 -65173106 - MIR SINE MIR -26 236 28 225 363 105 8 chr9 52689665 52689789 -65172838 + L2 LINE L2 3136 3271 -1 834 301 38 18 chr9 52690217 52690710 -65171917 + MLT2E LTR ERVL 2 552 -76 294 95 0 0 chr9 52690740 52690782 -65171845 + (TG)n Simple_repeat Simple_repeat 2 43 0 306 176 0 0 chr9 52690782 52690833 -65171794 + L2 LINE L2 3222 3272 0 537 114 0 0 chr9 52691087 52691175 -65171452 + AluS SINE Alu 221 308 -1 202 214 0 0 chr9 52692393 52692435 -65170192 + MIR3 SINE MIR 167 208 0 206 359 30 42 chr9 52692920 52693087 -65169540 + L2 LINE L2 3108 3272 0 2119 105 7 26 chr9 52693386 52693691 -65168936 + AluSq SINE Alu 1 299 -14 2179 114 3 3 chr9 52693962 52694261 -65168366 + AluSg SINE Alu 1 299 -11 461 330 21 46 chr9 52694417 52694509 -65168118 - MIR SINE MIR -7 255 162 311 295 59 91 chr9 52694509 52695034 -65167593 + MLT1J LTR MaLR 1 508 -3 461 330 21 46 chr9 52695034 52695180 -65167447 - MIR SINE MIR -100 162 23 546 16 0 0 chr9 52695201 52695264 -65167363 + (TC)n Simple_repeat Simple_repeat 1 63 0 348 187 154 22 chr9 52696064 52696155 -65166472 - MER103 DNA DNA -16 150 48 1990 196 56 20 chr9 52696325 52696733 -65165894 - MER82 DNA MER2_type 0 653 231 234 179 30 15 chr9 52696733 52696800 -65165827 + (TA)n Simple_repeat Simple_repeat 2 69 0 1053 200 33 5 chr9 52696850 52697065 -65165562 - MER82 DNA MER2_type -432 221 1 670 232 36 18 chr9 52697193 52697361 -65165266 - MIR SINE MIR -10 252 82 204 258 0 106 chr9 52697858 52697924 -65164703 + L2 LINE L2 3205 3263 -9 426 273 50 72 chr9 52698223 52698501 -65164126 + L1M4c LINE L1 1192 1463 -4921 190 275 77 22 chr9 52698524 52698615 -65164012 + MIR SINE MIR 113 208 -54 558 292 111 26 chr9 52698642 52698868 -65163759 + MIR SINE MIR 6 250 -12 256 171 79 53 chr9 52699796 52699872 -65162755 - MLT1K LTR MaLR 0 588 511 2519 58 0 3 chr9 52700524 52700834 -65161793 + AluY SINE Alu 1 309 -2 225 304 134 20 chr9 52701318 52701519 -65161108 + L1MC5 LINE L1 7685 7908 -53 212 225 0 0 chr9 52701648 52701688 -65160939 - L3 LINE CR1 -153 1424 1385 414 242 102 90 chr9 52701783 52702034 -65160593 + L1MC5 LINE L1 7637 7891 -66 2409 65 0 7 chr9 52702034 52702340 -65160287 - AluY SINE Alu -7 304 1 2568 55 0 3 chr9 52702377 52702688 -65159939 - AluY SINE Alu -1 310 1 4986 259 86 25 chr9 52703093 52705023 -65157604 + L1M4 LINE L1 2 2050 -4596 847 172 17 138 chr9 52705051 52705283 -65157344 - MLT1E1 LTR MaLR -447 207 4 195 186 0 0 chr9 52705320 52705363 -65157264 + (TTA)n Simple_repeat Simple_repeat 3 45 0 1134 173 150 42 chr9 52705539 52705852 -65156775 - MER7A DNA MER2_type -1 345 1 275 123 35 0 chr9 52707176 52707233 -65155394 + (CAGA)n Simple_repeat Simple_repeat 2 60 0 25 31 0 0 chr9 52707422 52707454 -65155173 + AT_rich Low_complexity Low_complexity 1 32 0 330 316 39 47 chr9 52707491 52707855 -65154772 + HAL1b LINE L1 64 424 -924 1965 159 32 6 chr9 52708328 52708668 -65153959 - MLT1A1 LTR MaLR -16 349 1 21 0 0 0 chr9 52708884 52708905 -65153722 + AT_rich Low_complexity Low_complexity 1 21 0 4630 118 52 63 chr9 52709372 52715413 -65147214 - L1PA7 LINE L1 0 6154 12 1176 315 96 14 chr9 52715633 52716205 -65146422 + L2 LINE L2 2328 2946 -368 409 271 129 19 chr9 52716269 52716479 -65146148 + L2 LINE L2 3081 3313 0 24 0 0 0 chr9 52716849 52716873 -65145754 + AT_rich Low_complexity Low_complexity 1 24 0 242 320 13 0 chr9 52717124 52717202 -65145425 - L2 LINE L2 -8 3264 3186 465 291 27 7 chr9 52717301 52717449 -65145178 - MIR SINE MIR -49 213 63 21 0 0 0 chr9 52718113 52718134 -65144493 + AT_rich Low_complexity Low_complexity 1 21 0 917 211 76 110 chr9 52719455 52719979 -65142648 - MER51C LTR ERV1 -25 615 1 381 303 33 8 chr9 52720592 52720714 -65141913 - L2 LINE L2 -10 3262 3138 1437 276 119 23 chr9 52720868 52721301 -65141326 + HAL1 LINE L1 3 520 -1987 2509 114 19 6 chr9 52721301 52721660 -65140967 - THE1B LTR MaLR 0 364 1 1437 276 119 23 chr9 52721660 52721871 -65140756 + HAL1 LINE L1 520 709 -1798 2588 181 5 39 chr9 52721963 52722474 -65140153 + L1MB7 LINE L1 5633 6125 -59 1663 159 74 0 chr9 52722474 52722744 -65139883 - AluSx SINE Alu -22 290 1 2588 181 5 39 chr9 52722744 52722795 -65139832 + L1MB7 LINE L1 6125 6176 -8 1302 208 87 95 chr9 52722800 52722844 -65139783 + HAL1 LINE L1 835 878 -1629 1276 194 25 9 chr9 52722844 52723159 -65139468 - MER33 DNA MER1_type 0 324 5 1302 208 87 95 chr9 52723159 52723926 -65138701 + HAL1 LINE L1 878 1640 -867 4702 229 100 56 chr9 52724049 52726111 -65136516 - Charlie2a DNA MER1_type -194 2668 440 2532 59 7 0 chr9 52726111 52726417 -65136210 + AluY SINE Alu 1 308 -3 4702 229 100 56 chr9 52726417 52726842 -65135785 - Charlie2a DNA MER1_type -2422 440 35 284 244 67 33 chr9 52727460 52727550 -65135077 - L2 LINE L2 0 3272 3180 198 71 0 0 chr9 52727622 52727650 -65134977 + (TGGGGG)n Simple_repeat Simple_repeat 3 30 0 370 62 0 0 chr9 52727729 52727777 -65134850 - MER58A DNA MER1_type 0 224 177 1099 229 14 0 chr9 52728042 52728260 -65134367 + MER58A DNA MER1_type 4 224 0 40 21 0 0 chr9 52728494 52728541 -65134086 + AT_rich Low_complexity Low_complexity 1 47 0 1877 128 57 11 chr9 52729399 52729681 -65132946 - AluSx SINE Alu -17 295 1 2293 112 0 0 chr9 52729705 52730010 -65132617 - AluSg SINE Alu -5 305 1 27 0 0 0 chr9 52730032 52730059 -65132568 + AT_rich Low_complexity Low_complexity 1 27 0 181 299 119 0 chr9 52730246 52730313 -65132314 + MIR SINE MIR 65 139 -123 2344 106 0 0 chr9 52730532 52730833 -65131794 - AluSp SINE Alu -10 303 3 983 329 94 50 chr9 52730851 52732069 -65130558 + L2 LINE L2 1996 3271 -1 221 345 146 27 chr9 52732153 52732414 -65130213 - L3 LINE CR1 -154 1423 1132 652 320 22 4 chr9 52732414 52732642 -65129985 + MIR SINE MIR 11 242 -20 2361 121 0 0 chr9 52732675 52732981 -65129646 + AluSx SINE Alu 1 306 -6 234 0 0 0 chr9 52732981 52733007 -65129620 + (TA)n Simple_repeat Simple_repeat 2 27 0 299 211 135 0 chr9 52733046 52733150 -65129477 - MLT2E LTR ERVL -6 622 505 489 243 121 75 chr9 52733262 52733567 -65129060 - MLT2E LTR ERVL -309 319 1 377 314 70 70 chr9 52733645 52734018 -65128609 - L3 LINE CR1 -529 1048 676 183 354 10 10 chr9 52734805 52734904 -65127723 + MIR SINE MIR 164 262 0 330 291 45 9 chr9 52734937 52735047 -65127580 + L2 LINE L2 3199 3312 -1 738 198 91 30 chr9 52735636 52735833 -65126794 + MER3 DNA MER1_type 1 209 0 211 247 13 52 chr9 52735901 52735978 -65126649 + MIR SINE MIR 119 192 -70 196 197 16 16 chr9 52736064 52736125 -65126502 + (TA)n Simple_repeat Simple_repeat 2 62 0 1671 210 0 56 chr9 52736431 52736827 -65125800 + MLT1A2 LTR MaLR 1 374 0 711 227 52 13 chr9 52736995 52737149 -65125478 + FRAM SINE Alu 1 159 -17 1877 101 112 8 chr9 52737218 52737485 -65125142 + AluSg SINE Alu 1 295 -15 760 181 140 5 chr9 52737488 52737681 -65124946 - MLT1D LTR MaLR -3 502 284 752 180 27 0 chr9 52737705 52737855 -65124772 - MLT1D LTR MaLR -351 154 1 304 184 36 49 chr9 52738372 52738462 -65124165 - MIR3 SINE MIR -18 190 103 459 0 0 0 chr9 52739426 52739477 -65123150 + (TA)n Simple_repeat Simple_repeat 1 51 0 1388 153 3 53 chr9 52739477 52739798 -65122829 - AluY SINE Alu -6 305 1 1836 147 45 3 chr9 52740643 52740935 -65121692 + AluJb SINE Alu 2 305 -7 1921 154 10 7 chr9 52741745 52742044 -65120583 - AluJb SINE Alu -12 300 1 222 308 77 0 chr9 52742124 52742202 -65120425 + MIR SINE MIR 1 84 -178 255 31 0 0 chr9 52742307 52742339 -65120288 + (CA)n Simple_repeat Simple_repeat 1 32 0 2307 125 0 0 chr9 52742676 52742988 -65119639 + AluSx SINE Alu 1 312 0 295 290 173 6 chr9 52743416 52743578 -65119049 + MIR SINE MIR 74 262 0 4852 125 33 12 chr9 52744571 52744877 -65117750 - Tigger3b DNA MER2_type -1797 1231 933 2635 86 19 6 chr9 52744877 52745236 -65117391 + THE1B LTR MaLR 1 364 0 4852 125 33 12 chr9 52745236 52745807 -65116820 - Tigger3b DNA MER2_type -2095 933 336 1737 130 23 74 chr9 52746416 52746769 -65115858 - Tigger3b DNA MER2_type -895 336 2 293 301 71 53 chr9 52746842 52746955 -65115672 + L2 LINE L2 3139 3253 -19 2252 123 3 3 chr9 52747040 52747350 -65115277 + AluSx SINE Alu 3 312 0 998 218 62 0 chr9 52747463 52747674 -65114953 + MER58A DNA MER1_type 1 224 0 694 172 75 81 chr9 52748817 52749003 -65113624 - MER5A DNA MER1_type -1 188 4 313 184 206 88 chr9 52749032 52749168 -65113459 - MER5A DNA MER1_type 0 189 38 207 286 0 0 chr9 52749345 52749394 -65113233 + CT-rich Low_complexity Low_complexity 1 49 0 472 313 18 6 chr9 52749467 52749630 -65112997 + MIR3 SINE MIR 21 185 -23 530 312 65 9 chr9 52750068 52750283 -65112344 + MIR SINE MIR 20 246 -16 415 257 164 0 chr9 52750340 52750480 -65112147 + MIR SINE MIR 27 189 -73 1639 206 53 44 chr9 52750992 52751448 -65111179 + LTR40b LTR ERVL 2 461 -1 343 193 12 36 chr9 52751542 52751625 -65111002 + MIR SINE MIR 126 206 -56 398 293 115 11 chr9 52751727 52751901 -65110726 + MIR SINE MIR 53 244 -18 188 364 45 23 chr9 52751959 52752047 -65110580 + L2 LINE L2 3174 3263 -50 286 236 97 0 chr9 52752071 52752143 -65110484 - L2 LINE L2 0 3313 3235 26 0 0 0 chr9 52753761 52753787 -65108840 + AT_rich Low_complexity Low_complexity 1 26 0 202 241 90 0 chr9 52754883 52754967 -65107660 - MIR SINE MIR -59 149 68 21 0 0 0 chr9 52755912 52755933 -65106694 + AT_rich Low_complexity Low_complexity 1 21 0 348 279 16 0 chr9 52756190 52756319 -65106308 - L1MD3 LINE L1 -1 7994 7864 813 159 111 32 chr9 52756736 52756925 -65105702 - MLT2B2 LTR ERVL 0 515 312 2587 42 7 3 chr9 52757143 52757452 -65105175 - AluY SINE Alu -1 310 1 209 340 142 38 chr9 52757683 52757789 -65104838 + L2 LINE L2 3105 3221 -51 419 237 113 0 chr9 52758371 52758468 -65104159 - L2 LINE L2 -10 3303 3196 932 257 117 27 chr9 52759045 52759457 -65103170 + MER113 DNA MER1_type? 30 478 -43 305 306 63 27 chr9 52760519 52760630 -65101997 - MIR SINE MIR -61 147 33 272 300 0 0 chr9 52761092 52761152 -65101475 + MER5A DNA MER1_type 7 66 -123 278 235 0 157 chr9 52761178 52761255 -65101372 - MER5A DNA MER1_type -83 106 51 2289 105 0 3 chr9 52761255 52761560 -65101067 - AluSc SINE Alu -5 304 1 278 235 0 157 chr9 52761560 52761597 -65101030 - MER5A DNA MER1_type -138 51 10 734 228 44 120 chr9 52762530 52762776 -65099851 - LTR16A LTR ERVL 0 457 251 2094 114 3 54 chr9 52762776 52763091 -65099536 + AluSq SINE Alu 1 299 -14 734 228 44 120 chr9 52763091 52763319 -65099308 - LTR16A LTR ERVL -206 251 7 422 245 28 69 chr9 52764119 52764335 -65098292 - L1MC5 LINE L1 -29 7932 7726 252 0 0 0 chr9 52764559 52764587 -65098040 + (TAGG)n Simple_repeat Simple_repeat 4 31 0 413 328 60 11 chr9 52765437 52765620 -65097007 - MIR SINE MIR -67 195 4 1570 124 19 173 chr9 52765873 52766284 -65096343 + MER7A DNA MER2_type 1 346 0 332 244 8 0 chr9 52766449 52766576 -65096051 + (TA)n Simple_repeat Simple_repeat 1 128 0 22 0 0 0 chr9 52766663 52766685 -65095942 + AT_rich Low_complexity Low_complexity 1 22 0 5349 95 12 2 chr9 52766760 52767690 -65094937 + L1MA2 LINE L1 5103 6041 -263 1628 144 35 33 chr9 52767690 52768070 -65094557 - MSTA LTR MaLR 0 375 2 1749 103 15 0 chr9 52768070 52768333 -65094294 + L1MA1 LINE L1 6036 6302 0 1728 126 107 7 chr9 52768696 52768967 -65093660 - AluSg SINE Alu -12 298 1 2157 127 5 96 chr9 52769815 52770118 -65092509 + MER57A LTR ERV1 1 253 -150 2256 109 6 3 chr9 52770118 52770430 -65092197 + AluSp SINE Alu 1 313 0 2157 127 5 96 chr9 52770430 52770566 -65092061 + MER57A LTR ERV1 253 400 -3 2086 144 0 7 chr9 52770584 52770889 -65091738 + AluJb SINE Alu 1 303 -9 1454 137 58 0 chr9 52771125 52771351 -65091276 - MER7A DNA MER2_type 0 336 98 1412 169 3 137 chr9 52771357 52771521 -65091106 + AluJb SINE Alu 1 95 -217 2361 92 3 0 chr9 52771521 52771826 -65090801 + AluSp SINE Alu 1 306 -7 1412 169 3 137 chr9 52771826 52772011 -65090616 + AluJb SINE Alu 95 303 -9 1001 99 0 35 chr9 52772011 52772152 -65090475 + AluSg SINE Alu 1 136 -174 1084 114 18 159 chr9 52772160 52772387 -65090240 + AluSg/x SINE Alu 103 297 -15 601 160 60 0 chr9 52772392 52772492 -65090135 - MER7A DNA MER2_type -242 104 1 180 176 0 0 chr9 52772603 52772637 -65089990 + (TGGA)n Simple_repeat Simple_repeat 3 36 0 317 244 100 0 chr9 52772690 52772780 -65089847 + MER102a DNA MER1_type 226 324 -6 505 342 122 17 chr9 52774590 52774885 -65087742 + L3 LINE CR1 1250 1575 -2 2297 203 102 21 chr9 52775643 52775705 -65086922 + L1MC4 LINE L1 7258 7314 -728 16856 109 21 20 chr9 52775705 52776884 -65085743 + Tigger1 DNA MER2_type 1 1177 -1241 2290 110 10 0 chr9 52776884 52777185 -65085442 + AluSx SINE Alu 1 304 -8 16856 109 21 20 chr9 52777185 52778420 -65084207 + Tigger1 DNA MER2_type 1177 2418 0 2297 203 102 21 chr9 52778420 52778968 -65083659 + L1MC4 LINE L1 7314 7917 -125 797 94 0 0 chr9 52778995 52779101 -65083526 + AluY SINE Alu 2 107 -204 210 128 0 0 chr9 52779324 52779363 -65083264 + (TG)n Simple_repeat Simple_repeat 2 40 0 2232 124 3 0 chr9 52779975 52780281 -65082346 + AluSx SINE Alu 1 307 -5 837 74 25 8 chr9 52781486 52781608 -65081019 - AluY SINE Alu -187 124 1 228 163 23 0 chr9 52783286 52783329 -65079298 + L3 LINE CR1 1533 1576 -1 5020 140 52 42 chr9 52783500 52783659 -65078968 + Tigger2 DNA MER2_type 2 158 -2560 2450 75 3 3 chr9 52783659 52783965 -65078662 + AluSp SINE Alu 2 307 -6 5020 140 52 42 chr9 52783965 52784752 -65077875 + Tigger2 DNA MER2_type 158 957 -1761 24 53 0 0 chr9 52784925 52784963 -65077664 + AT_rich Low_complexity Low_complexity 1 38 0 1940 107 7 4 chr9 52787288 52787560 -65075067 - AluSx SINE Alu -39 273 1 245 253 53 27 chr9 52788066 52788141 -65074486 - MIR SINE MIR -119 143 67 1988 77 73 0 chr9 52788519 52788778 -65073849 - AluSp SINE Alu -10 303 26 631 388 54 0 chr9 52788953 52789247 -65073380 + MER115 DNA AcHobo 3 312 -381 478 316 55 44 chr9 52789292 52789564 -65073063 + L2 LINE L2 2913 3187 -126 325 291 89 38 chr9 52791075 52791233 -65071394 - MIR3 SINE MIR -13 195 30 1597 179 3 36 chr9 52791373 52791674 -65070953 - AluJo SINE Alu -21 291 1 1171 305 89 18 chr9 52791874 52792494 -65070133 - L1MC4a LINE L1 -1888 5920 5257 359 324 62 51 chr9 52792714 52792989 -65069638 - L1MC4a LINE L1 -1128 5018 4741 184 330 300 0 chr9 52794491 52794591 -65068036 + L2 LINE L2 3143 3272 0 914 224 87 5 chr9 52795401 52795597 -65067030 + MER58A DNA MER1_type 12 223 -1 292 179 18 0 chr9 52797916 52797972 -65064655 - MIR SINE MIR -3 259 203 1838 171 20 0 chr9 52797983 52798288 -65064339 - AluJb SINE Alu -1 311 1 815 179 8 0 chr9 52798288 52798422 -65064205 - AluJo SINE Alu -177 135 1 293 273 66 25 chr9 52798466 52798587 -65064040 - MIR SINE MIR -112 150 25 1388 140 9 5 chr9 52799001 52799215 -65063412 + AluJb SINE Alu 85 299 -13 429 209 12 0 chr9 52799217 52799303 -65063324 - MLT1G LTR MaLR -69 521 435 526 283 69 0 chr9 52799637 52799796 -65062831 - MIR SINE MIR -80 182 13 202 222 0 22 chr9 52800128 52800173 -65062454 - MIR SINE MIR -187 75 32 2249 160 92 82 chr9 52800479 52800979 -65061648 + MLT1D LTR MaLR 1 505 0 510 268 82 41 chr9 52801299 52801493 -65061134 - MIR SINE MIR -41 221 20 502 270 180 34 chr9 52801873 52802329 -65060298 - L3 LINE CR1 -5 1572 981 1948 157 0 10 chr9 52802613 52802925 -65059702 - AluSx SINE Alu -3 309 1 755 158 43 22 chr9 52803022 52803161 -65059466 + FRAM SINE Alu 28 169 -7 2035 116 39 3 chr9 52803278 52803562 -65059065 - AluSx SINE Alu -18 294 1 2431 225 85 18 chr9 52803808 52804476 -65058151 + L1ME1 LINE L1 5449 6161 -5 225 83 0 233 chr9 52804972 52805032 -65057595 + MER5A DNA MER1_type 1 46 -143 212 279 85 93 chr9 52805377 52805506 -65057121 - MIR SINE MIR -65 143 16 219 255 0 0 chr9 52807420 52807467 -65055160 + L2 LINE L2 2721 2767 -547 438 228 203 57 chr9 52807509 52807667 -65054960 + MER5A DNA MER1_type 7 187 -2 565 246 45 116 chr9 52807701 52808099 -65054528 + L2 LINE L2 2818 3187 -126 426 257 2 18 chr9 52808100 52808221 -65054406 + MLT1H LTR MaLR 3 162 -387 310 206 61 91 chr9 52808382 52808547 -65054080 + MLT1H LTR MaLR 375 534 -15 351 265 77 17 chr9 52808556 52808673 -65053954 + L2 LINE L2 3183 3306 -7 279 0 0 0 chr9 52808862 52808893 -65053734 + (A)n Simple_repeat Simple_repeat 1 31 0 1160 280 71 11 chr9 52810068 52810450 -65052177 - MLT1I LTR MaLR 0 409 5 2270 99 3 0 chr9 52810524 52810817 -65051810 - AluSp SINE Alu -19 294 1 2238 105 0 3 chr9 52810894 52811188 -65051439 - AluSx SINE Alu -19 293 1 1084 85 6 11 chr9 52811239 52811415 -65051212 + (TAGA)n Simple_repeat Simple_repeat 3 177 0 205 222 37 0 chr9 52811667 52811721 -65050906 + GA-rich Low_complexity Low_complexity 1 56 0 190 349 91 51 chr9 52813074 52813349 -65049278 - L2 LINE L2 -341 2973 2688 * 433 275 168 57 chr9 52813344 52813509 -65049118 + L2 LINE L2 2827 2972 -341 2222 100 0 3 chr9 52813509 52813800 -65048827 + AluSg SINE Alu 1 290 -20 433 275 168 57 chr9 52813800 52814056 -65048571 + L2 LINE L2 2972 3295 -18 2708 165 11 60 chr9 52814056 52814112 -65048515 - L1MB8 LINE L1 -2 6176 6119 2068 134 49 21 chr9 52814112 52814440 -65048187 - MER1B DNA MER1_type 0 337 1 2708 165 11 60 chr9 52814440 52814515 -65048112 - L1MB8 LINE L1 -59 6119 6042 1398 167 34 54 chr9 52814515 52814809 -65047818 - AluJo SINE Alu -24 288 1 2708 165 11 60 chr9 52814809 52815246 -65047381 - L1MB8 LINE L1 -136 6042 5635 2353 100 0 0 chr9 52816434 52816735 -65045892 - AluSg SINE Alu -9 301 1 544 242 148 36 chr9 52816782 52817127 -65045500 + L2 LINE L2 2714 3088 -225 323 295 0 0 chr9 52817176 52817254 -65045373 + L2 LINE L2 3195 3272 0 313 333 87 0 chr9 52817253 52817391 -65045236 - MIR SINE MIR -110 152 3 * 391 324 82 34 chr9 52818114 52818321 -65044306 + MLT1K LTR MaLR 13 229 -359 584 260 130 22 chr9 52818478 52818701 -65043926 - MER46C DNA MER2_type 0 338 92 1931 145 20 0 chr9 52819009 52819306 -65043321 + AluSx SINE Alu 10 312 0 285 234 37 65 chr9 52819650 52819757 -65042870 - MIR SINE MIR -55 207 104 210 210 12 25 chr9 52819991 52820072 -65042555 + (TA)n Simple_repeat Simple_repeat 2 81 0 22 35 0 0 chr9 52821229 52821258 -65041369 + AT_rich Low_complexity Low_complexity 1 29 0 250 256 34 11 chr9 52821503 52821593 -65041034 - MIR SINE MIR -45 163 69 755 295 122 80 chr9 52823499 52823852 -65038775 + L2 LINE L2 1933 2270 -1043 2378 93 3 0 chr9 52823852 52824162 -65038465 + AluSp SINE Alu 3 313 0 755 295 122 80 chr9 52824162 52825147 -65037480 + L2 LINE L2 2270 3313 0 354 313 86 0 chr9 52825345 52825473 -65037154 + MIR3 SINE MIR 40 178 -30 2174 103 3 7 chr9 52825618 52825910 -65036717 - AluSg SINE Alu -19 291 1 1695 192 0 17 chr9 52826877 52827169 -65035458 - AluJo SINE Alu -25 287 1 5048 67 7 19 chr9 52827191 52827889 -65034738 - L1PA6 LINE L1 -8 6146 5457 300 266 0 0 chr9 52828210 52828274 -65034353 - MIR SINE MIR -10 252 189 251 176 0 29 chr9 52828325 52828393 -65034234 + (TTTAA)n Simple_repeat Simple_repeat 2 67 0 601 165 173 0 chr9 52828403 52828530 -65034097 - MER106B DNA MER1_type -910 149 1 485 257 170 29 chr9 52828537 52828708 -65033919 - MIR SINE MIR -66 196 2 444 369 32 16 chr9 52828872 52829111 -65033516 - MIR SINE MIR -19 243 1 313 341 78 6 chr9 52831304 52831471 -65031156 + MIR SINE MIR 32 210 -52 235 253 92 11 chr9 52832376 52832463 -65030164 + MER94 DNA DNA 40 133 -1 284 300 14 0 chr9 52832596 52832666 -65029961 + MER91A DNA MER1_type 126 196 0 510 151 8 87 chr9 52832997 52833123 -65029504 + Charlie5 DNA MER1_type 12 127 -2485 * 1532 189 71 3 chr9 52833120 52833485 -65029142 + Charlie5 DNA MER1_type 2234 2623 0 249 300 79 50 chr9 52833493 52833773 -65028854 - L2 LINE L2 -22 3291 3004 437 225 92 25 chr9 52834464 52834584 -65028043 + MIR SINE MIR 15 142 -120 2448 82 0 7 chr9 52835162 52835467 -65027160 + AluSg SINE Alu 1 303 -7 501 253 133 18 chr9 52835474 52835640 -65026987 + MIR SINE MIR 1 185 -77 23 68 0 0 chr9 52835868 52835912 -65026715 + AT_rich Low_complexity Low_complexity 1 44 0 235 295 0 0 chr9 52836604 52836665 -65025962 + MIR3 SINE MIR 114 174 -34 1712 185 106 84 chr9 52836742 52836809 -65025818 - MLT2B1 LTR ERVL 0 520 456 351 65 0 0 chr9 52836809 52836855 -65025772 + (TG)n Simple_repeat Simple_repeat 1 46 0 1712 185 106 84 chr9 52836855 52837296 -65025331 - MLT2B1 LTR ERVL -64 456 1 25 31 0 0 chr9 52838646 52838678 -65023949 + AT_rich Low_complexity Low_complexity 1 32 0 346 93 0 0 chr9 52838687 52838741 -65023886 - L1PA16 LINE L1 -16 6150 6097 2055 123 0 0 chr9 52838844 52839112 -65023515 - AluSx SINE Alu -44 268 1 1068 115 6 0 chr9 52839112 52839269 -65023358 - THE1B LTR MaLR -206 158 1 367 286 8 71 chr9 52839505 52839631 -65022996 - L2 LINE L2 -541 2773 2656 180 0 0 0 chr9 52840198 52840218 -65022409 + (T)n Simple_repeat Simple_repeat 1 20 0 273 298 149 14 chr9 52840355 52840496 -65022131 - MIR3 SINE MIR -13 195 36 1045 243 104 9 chr9 52841961 52842355 -65020272 - MLT1F LTR MaLR -103 487 1 210 279 25 13 chr9 52842355 52842434 -65020193 + MIR SINE MIR 183 262 0 195 333 48 0 chr9 52842973 52843036 -65019591 - L2 LINE L2 -7 3265 3200 194 319 132 0 chr9 52843214 52843305 -65019322 - MER5B DNA MER1_type -24 154 52 183 316 0 18 chr9 52843309 52843366 -65019261 + L2 LINE L2 3258 3313 0 537 299 46 26 chr9 52843413 52843607 -65019020 - MIR SINE MIR -20 242 45 496 229 153 7 chr9 52843650 52843794 -65018833 - MER5A DNA MER1_type -23 166 2 25 0 0 0 chr9 52844262 52844287 -65018340 + AT_rich Low_complexity Low_complexity 1 25 0 1173 176 5 54 chr9 52844296 52844518 -65018109 + AluJo SINE Alu 77 287 -25 309 51 0 0 chr9 52844990 52845029 -65017598 + (CA)n Simple_repeat Simple_repeat 2 40 0 337 314 71 35 chr9 52845690 52845859 -65016768 + MIR3 SINE MIR 28 202 -6 754 310 121 76 chr9 52845899 52845999 -65016628 + L2 LINE L2 2210 2304 -968 2739 203 37 0 chr9 52845999 52846540 -65016087 - MER68 LTR ERV1 0 562 2 754 310 121 76 chr9 52846540 52846808 -65015819 + L2 LINE L2 2304 2559 -713 2471 74 7 0 chr9 52846808 52847117 -65015510 - AluY SINE Alu 0 311 1 754 310 121 76 chr9 52847117 52847765 -65014862 + L2 LINE L2 2559 3272 0 351 44 0 0 chr9 52848137 52848182 -65014445 + (CA)n Simple_repeat Simple_repeat 1 45 0 21 36 0 0 chr9 52848506 52848534 -65014093 + AT_rich Low_complexity Low_complexity 1 28 0 532 235 96 19 chr9 52851181 52851441 -65011186 - L1MC5 LINE L1 -159 7802 7523 192 40 0 0 chr9 52851446 52851471 -65011156 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 1687 54 0 0 chr9 52851471 52851676 -65010951 - L1PA7 LINE L1 -16 6138 5934 3343 97 4 12 chr9 52851689 52852184 -65010443 - MER9 LTR ERVK -20 491 1 2196 70 13 0 chr9 52852195 52852509 -65010118 + L1P LINE L1 5017 5334 -812 1806 225 80 71 chr9 52852505 52853559 -65009068 - L1MC5 LINE L1 -428 7533 6456 * 198 0 0 0 chr9 52853863 52853885 -65008742 + (T)n Simple_repeat Simple_repeat 1 22 0 294 336 40 8 chr9 52854473 52854598 -65008029 - L2 LINE L2 -1 3271 3143 249 250 23 0 chr9 52854909 52854997 -65007630 + MER103 DNA DNA 52 141 -25 767 169 31 0 chr9 52855656 52855786 -65006841 + AluJb SINE Alu 167 300 -12 1875 238 134 65 chr9 52855818 52856205 -65006422 - L1MC4 LINE L1 -2 8040 7681 1491 184 59 21 chr9 52856205 52856493 -65006134 - AluJb SINE Alu -13 299 1 1875 238 134 65 chr9 52856493 52857821 -65004806 - L1MC4 LINE L1 -361 7681 6128 961 267 84 14 chr9 52857828 52858244 -65004383 - L1MC4 LINE L1 -1893 5915 5471 940 184 4 90 chr9 52858245 52858479 -65004148 - AluJo SINE Alu -19 293 80 21 57 0 0 chr9 52858616 52858651 -65003976 + AT_rich Low_complexity Low_complexity 1 35 0 342 293 58 37 chr9 52859079 52859270 -65003357 - HAL1b LINE L1 -672 676 482 1453 140 12 53 chr9 52860033 52860191 -65002436 - AluJb SINE Alu -24 288 142 405 0 0 0 chr9 52860191 52860236 -65002391 + (TG)n Simple_repeat Simple_repeat 2 46 0 1453 140 12 53 chr9 52860236 52860320 -65002307 - AluJb SINE Alu -170 142 56 2212 116 0 0 chr9 52860847 52861140 -65001487 - AluSg SINE Alu -3 307 15 873 122 72 22 chr9 52861271 52861451 -65001176 + MER53 DNA DNA 1 189 0 2256 62 0 0 chr9 52861775 52862050 -65000577 + AluSc SINE Alu 35 309 0 295 232 228 52 chr9 52862481 52862731 -64999896 + MLT1L LTR MaLR 314 607 -8 2432 186 18 5 chr9 52867012 52867498 -64995129 - MLT2B1 LTR ERVL -20 534 1 254 301 137 61 chr9 52867952 52868214 -64994413 + L2 LINE L2 2837 3118 -154 227 290 36 40 chr9 52869570 52869688 -64992939 - MIR SINE MIR -104 104 4 213 39 0 0 chr9 52869800 52869826 -64992801 + (TG)n Simple_repeat Simple_repeat 1 26 0 194 261 78 52 chr9 52870093 52870208 -64992419 + L3 LINE CR1 1281 1398 -179 390 190 0 13 chr9 52870309 52870388 -64992239 - MER63 DNA MER1_type -87 749 672 2044 114 52 15 chr9 52870392 52870716 -64991911 + MER1B DNA MER1_type 1 336 -1 192 333 0 0 chr9 52870760 52870808 -64991819 + L3 LINE CR1 1426 1473 -104 642 320 18 4 chr9 52871079 52871304 -64991323 + MIR SINE MIR 31 258 -4 216 111 0 0 chr9 52873382 52873418 -64989209 + (GA)n Simple_repeat Simple_repeat 2 37 0 395 278 70 78 chr9 52873882 52874208 -64988419 + L2 LINE L2 2767 3099 -214 1812 167 54 0 chr9 52875452 52875746 -64986881 + AluJo SINE Alu 1 310 -2 279 311 107 0 chr9 52876502 52876605 -64986022 - MIR3 SINE MIR -13 195 82 221 260 26 39 chr9 52877029 52877106 -64985521 + MIR3 SINE MIR 109 184 -24 783 191 15 0 chr9 52877334 52877465 -64985162 + AluJ SINE Alu 1 133 -169 198 0 0 0 chr9 52877470 52877492 -64985135 + (GA)n Simple_repeat Simple_repeat 1 22 0 23 54 0 0 chr9 52877975 52878012 -64984615 + AT_rich Low_complexity Low_complexity 1 37 0 860 181 6 31 chr9 52878018 52878178 -64984449 + AluJ SINE Alu 129 284 -28 3062 174 15 71 chr9 52880313 52881042 -64981585 - LTR8 LTR ERV1 0 691 4 7691 120 20 20 chr9 52881046 52882745 -64979882 - HUERS-P1 LTR ERV1 -1 6262 4099 1879 159 3 3 chr9 52883476 52883778 -64978849 + AluJo SINE Alu 1 302 -10 228 288 12 25 chr9 52884324 52884404 -64978223 - L2 LINE L2 -1 3271 3193 1629 191 64 9 chr9 52885691 52886037 -64976590 - MLT1A1 LTR MaLR 0 365 1 347 219 193 9 chr9 52887024 52887138 -64975489 + LTR33 LTR ERVL 1 135 -386 260 286 107 0 chr9 52888524 52888608 -64974019 + MIR SINE MIR 42 134 -74 218 290 129 0 chr9 52888773 52888835 -64973792 - MIR SINE MIR -141 121 52 637 133 103 98 chr9 52889176 52889379 -64973248 - MER89 LTR ERV1 0 559 356 180 0 0 0 chr9 52889426 52889446 -64973181 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 759 32 0 0 chr9 52892393 52892487 -64970140 + (TC)n Simple_repeat Simple_repeat 1 94 0 307 211 33 11 chr9 52892532 52892622 -64970005 + LTR67 LTR ERVL 423 514 -43 207 309 18 0 chr9 52893341 52893396 -64969231 - L2 LINE L2 -216 3056 3001 2270 107 3 3 chr9 52893633 52893933 -64968694 + AluSc SINE Alu 1 300 -9 1877 150 0 18 chr9 52894449 52894735 -64967892 + AluSx SINE Alu 8 288 -24 2437 41 34 0 chr9 52895138 52895431 -64967196 + AluY SINE Alu 1 303 -8 22 80 0 0 chr9 52895737 52895787 -64966840 + AT_rich Low_complexity Low_complexity 1 50 0 967 149 0 0 chr9 52895804 52895945 -64966682 - AluJb SINE Alu -171 141 1 2568 71 0 0 chr9 52898239 52898549 -64964078 - AluSg SINE Alu 0 310 1 2501 71 0 0 chr9 52898623 52898933 -64963694 - AluY SINE Alu -1 310 1 2169 61 0 0 chr9 52899174 52899436 -64963191 - AluY SINE Alu -16 295 34 294 354 72 19 chr9 52900612 52900821 -64961806 + MIR SINE MIR 17 236 -26 621 256 85 10 chr9 52901090 52901289 -64961338 + MER58C DNA MER1_type 2 215 0 319 273 11 11 chr9 52902117 52902205 -64960422 + L2 LINE L2 3223 3310 -3 2631 91 8 6 chr9 52904358 52904721 -64957906 - THE1B LTR MaLR 0 364 1 6325 105 277 12 chr9 52904721 52905970 -64956657 - THE1B-int LTR MaLR 0 1580 1 2602 97 14 3 chr9 52905970 52906330 -64956297 - THE1B LTR MaLR 0 364 1 635 230 91 16 chr9 52906741 52906928 -64955699 - L1MD2 LINE L1 -22 6337 6137 21 0 0 0 chr9 52907475 52907496 -64955131 + AT_rich Low_complexity Low_complexity 1 21 0 307 208 113 57 chr9 52907851 52907957 -64954670 + MIR SINE MIR 111 222 -40 1711 155 16 48 chr9 52909906 52910222 -64952405 - AluJo SINE Alu -6 306 1 369 238 117 49 chr9 52910626 52910849 -64951778 + L1MEd LINE L1 598 835 -5284 688 195 0 47 chr9 52910937 52911086 -64951541 + FLAM_A SINE Alu 1 142 0 225 295 75 25 chr9 52911087 52911287 -64951340 + L1MEd LINE L1 926 1135 -4984 3278 39 16 0 chr9 52911289 52911728 -64950899 - L1P LINE L1 -844 5302 4857 25 65 0 0 chr9 52911835 52911881 -64950746 + AT_rich Low_complexity Low_complexity 1 46 0 307 261 139 26 chr9 52911939 52912054 -64950573 + L1MEd LINE L1 1235 1362 -4767 2347 152 33 21 chr9 52912215 52912644 -64949983 - Tigger2a DNA MER2_type 0 434 1 415 340 37 4 chr9 52913282 52913526 -64949101 + L1MEd LINE L1 2659 2910 -3219 21 36 0 0 chr9 52913706 52913734 -64948893 + AT_rich Low_complexity Low_complexity 1 28 0 847 197 0 0 chr9 52913750 52913948 -64948679 + L1MA4 LINE L1 6092 6289 -11 1520 218 0 4 chr9 52914058 52914333 -64948294 + AluJo SINE Alu 21 294 -18 309 217 44 30 chr9 52914430 52914596 -64948031 + L1ME LINE L1 5314 5484 -637 2508 165 19 2 chr9 52914736 52915210 -64947417 - L1MA4 LINE L1 -5 6295 5814 1100 165 0 0 chr9 52915211 52915375 -64947252 - AluJ SINE Alu -14 298 135 6657 47 5 32 chr9 52915402 52916926 -64945701 - SVA Other Other -629 1386 549 838 168 0 0 chr9 52916929 52917060 -64945567 - AluJ SINE Alu -181 131 1 4026 158 59 32 chr9 52917060 52918412 -64944215 - L1MA4 LINE L1 -469 5831 4447 276 178 0 0 chr9 52918493 52918538 -64944089 + L1ME LINE L1 5612 5656 -465 223 322 66 33 chr9 52918900 52919021 -64943606 + MIR SINE MIR 23 147 -61 321 333 55 6 chr9 52919049 52919232 -64943395 - MER117 DNA MER1_type -5 192 1 792 171 164 39 chr9 52919332 52919642 -64942985 - Charlie5 DNA MER1_type -30 2582 2234 21 36 0 0 chr9 52921954 52921982 -64940645 + AT_rich Low_complexity Low_complexity 1 28 0 2513 69 0 0 chr9 52922070 52922373 -64940254 - AluY SINE Alu -8 303 1 263 334 22 118 chr9 52924818 52925174 -64937453 + L2 LINE L2 2946 3267 -5 467 308 60 16 chr9 52926669 52926854 -64935773 + MIR SINE MIR 48 240 -22 2257 99 0 0 chr9 52927011 52927323 -64935304 + AluSx SINE Alu 1 312 0 27 29 0 0 chr9 52927526 52927560 -64935067 + AT_rich Low_complexity Low_complexity 1 34 0 595 318 111 23 chr9 52927896 52928568 -64934059 - L2 LINE L2 0 3313 2569 230 270 63 0 chr9 52929064 52929127 -64933500 - MIR SINE MIR -72 190 124 603 319 52 12 chr9 52929220 52929468 -64933159 + L2 LINE L2 1451 1708 -1606 3823 180 26 49 chr9 52929502 52930842 -64931785 - L1PA16 LINE L1 -11 6155 4708 251 61 0 0 chr9 52931297 52931330 -64931297 + AluSq/x SINE Alu 113 145 -158 805 84 9 0 chr9 52931330 52931437 -64931190 - AluSq/x SINE Alu -205 108 1 2395 226 31 3 chr9 52931443 52932049 -64930578 - L1PA16 LINE L1 -1771 4375 3753 501 293 43 26 chr9 52932056 52932288 -64930339 + L2 LINE L2 1730 1965 -1349 223 313 12 12 chr9 52932406 52932486 -64930141 + L2 LINE L2 3234 3313 0 483 270 93 52 chr9 52932599 52932847 -64929780 + MIR SINE MIR 4 261 -1 422 202 18 37 chr9 52933099 52933171 -64929456 - MER103 DNA DNA -1 165 93 2240 105 0 0 chr9 52933171 52933511 -64929116 + AluSq SINE Alu 1 340 0 422 202 18 37 chr9 52933511 52933546 -64929081 - MER103 DNA DNA -73 93 59 321 330 70 0 chr9 52934460 52934575 -64928052 - L2 LINE L2 -7 3265 3143 2107 130 16 3 chr9 52934926 52935233 -64927394 + AluSx SINE Alu 1 311 -1 201 260 13 5 chr9 52935234 52935278 -64927349 - L2 LINE L2 -18 3295 3210 285 261 111 39 chr9 52936558 52936711 -64925916 + L3 LINE CR1 1412 1575 -2 198 358 130 0 chr9 52937360 52937483 -64925144 + MIR SINE MIR 69 207 -55 208 236 219 57 chr9 52938715 52938838 -64923789 + MIR3 SINE MIR 20 162 -46 26 0 0 0 chr9 52940923 52940949 -64921678 + AT_rich Low_complexity Low_complexity 1 26 0 313 291 62 52 chr9 52941385 52941595 -64921032 + MIR SINE MIR 25 236 -26 270 157 78 0 chr9 52942615 52942666 -64919961 - MLT1B LTR MaLR -1 389 335 2862 147 42 0 chr9 52942666 52943148 -64919479 - MER1A DNA MER1_type 0 529 28 635 207 55 0 chr9 52943158 52943303 -64919324 - MLT1B LTR MaLR -46 344 192 207 125 0 0 chr9 52943313 52943353 -64919274 + (GA)n Simple_repeat Simple_repeat 1 40 0 474 224 109 14 chr9 52943374 52943521 -64919106 - MLT1B LTR MaLR -213 161 1 1178 176 154 22 chr9 52944391 52944658 -64917969 - AluJo SINE Alu 0 302 1 304 241 124 121 chr9 52944905 52945081 -64917546 - L1ME4a LINE L1 0 6121 5947 1559 210 6 19 chr9 52945081 52945395 -64917232 - AluJo SINE Alu -2 310 1 304 241 124 121 chr9 52945395 52945566 -64917061 - L1ME4a LINE L1 -174 5947 5773 204 255 0 20 chr9 52945566 52945617 -64917010 + (CATATA)n Simple_repeat Simple_repeat 5 54 0 2100 124 3 23 chr9 52946611 52946910 -64915717 - AluSx SINE Alu -19 293 1 447 276 18 25 chr9 52946999 52947162 -64915465 - MER103 DNA DNA -3 163 2 317 301 41 16 chr9 52947261 52947384 -64915243 + MIR SINE MIR 60 185 -77 493 210 32 164 chr9 52947444 52947663 -64914964 + MIR SINE MIR 43 232 -30 225 0 0 0 chr9 52948191 52948216 -64914411 + (CA)n Simple_repeat Simple_repeat 2 26 0 317 252 60 12 chr9 52948355 52948453 -64914174 - MIR SINE MIR -96 112 8 2140 120 10 3 chr9 52948598 52948898 -64913729 - AluSx SINE Alu -6 306 5 2376 99 0 3 chr9 52948920 52949233 -64913394 - AluSx SINE Alu 0 312 1 1862 14 0 9 chr9 52949243 52949456 -64913171 - AluYb8 SINE Alu -2 316 106 350 325 90 24 chr9 52949558 52949770 -64912857 + MIR SINE MIR 2 227 -35 398 252 109 20 chr9 52951272 52951419 -64911208 + MIR SINE MIR 92 251 -11 564 288 59 30 chr9 52952364 52952600 -64910027 - MIR SINE MIR -11 251 9 508 314 113 25 chr9 52952901 52953184 -64909443 + L2 LINE L2 2929 3236 -77 356 176 0 14 chr9 52954235 52954309 -64908318 + MIR SINE MIR 69 141 -121 715 228 80 31 chr9 52954442 52954666 -64907961 + MER46A DNA MER2_type 2 236 0 2315 201 32 9 chr9 52957014 52957552 -64905075 + L1MB2 LINE L1 5621 6170 -1 243 157 0 146 chr9 52958272 52958361 -64904266 + MER106A DNA MER1_type 14 89 -147 249 279 0 0 chr9 52958916 52958977 -64903650 + MER96 DNA MER1_type? 1 61 -114 783 258 141 7 chr9 52959963 52960261 -64902366 + MER46C DNA MER2_type 1 338 0 2253 92 0 3 chr9 52960473 52960768 -64901859 + AluSc SINE Alu 1 294 -15 22 0 0 0 chr9 52961428 52961450 -64901177 + AT_rich Low_complexity Low_complexity 1 22 0 995 126 0 0 chr9 52962570 52962705 -64899922 + FRAM SINE Alu 21 155 -21 1934 167 6 6 chr9 52962827 52963139 -64899488 + AluSx SINE Alu 1 312 0 216 219 125 16 chr9 52964986 52965050 -64897577 - MIR3 SINE MIR -46 162 92 514 286 88 6 chr9 52966886 52967068 -64895559 - L2 LINE L2 -655 2659 2463 355 286 206 11 chr9 52968620 52968809 -64893818 - MIR SINE MIR -9 253 28 318 250 54 71 chr9 52969147 52969259 -64893368 - L2 LINE L2 -30 3242 3133 32 0 0 0 chr9 52970302 52970334 -64892293 + AT_rich Low_complexity Low_complexity 1 32 0 33 73 0 0 chr9 52970656 52970724 -64891903 + AT_rich Low_complexity Low_complexity 1 68 0 25 31 0 0 chr9 52971336 52971368 -64891259 + AT_rich Low_complexity Low_complexity 1 32 0 2227 129 12 26 chr9 52971649 52972066 -64890561 - L1MA1 LINE L1 0 6302 5892 421 293 36 68 chr9 52972771 52972993 -64889634 + MIR SINE MIR 4 218 -44 246 214 18 0 chr9 52973622 52973678 -64888949 - L1P LINE L1 -2467 3679 3623 2854 3 0 0 chr9 52973815 52974123 -64888504 - AluYa5 SINE Alu -3 308 1 215 210 32 16 chr9 52974238 52974300 -64888327 + CT-rich Low_complexity Low_complexity 2 64 0 2265 89 3 49 chr9 52974817 52975144 -64887483 - AluSq SINE Alu -1 312 1 25 0 0 0 chr9 52975557 52975582 -64887045 + AT_rich Low_complexity Low_complexity 1 25 0 795 314 8 16 chr9 52976109 52976357 -64886270 + MIR SINE MIR 10 255 -7 2207 95 3 10 chr9 52976466 52976771 -64885856 + AluSc SINE Alu 1 303 -6 714 322 34 26 chr9 52977398 52977631 -64884996 + MIR SINE MIR 16 250 -12 236 250 67 0 chr9 52977834 52977894 -64884733 - MLT1J LTR MaLR -216 295 232 264 59 0 0 chr9 52978169 52978203 -64884424 + (TG)n Simple_repeat Simple_repeat 1 34 0 1452 216 20 12 chr9 52978309 52978333 -64884294 + L1PB4 LINE L1 5804 5826 -330 2261 106 3 0 chr9 52978333 52978625 -64884002 + AluSp SINE Alu 1 293 -20 1452 216 20 12 chr9 52978625 52978943 -64883684 + L1PB4 LINE L1 5826 6149 -7 439 323 56 15 chr9 52979784 52979982 -64882645 - MIR SINE MIR -44 218 13 204 40 0 0 chr9 52980908 52980933 -64881694 + (CAAAA)n Simple_repeat Simple_repeat 5 29 0 389 272 98 41 chr9 52982385 52982631 -64879996 + MIR SINE MIR 1 260 -2 363 333 132 11 chr9 52984663 52984852 -64877775 - MIR SINE MIR -5 257 46 22 35 0 0 chr9 52986520 52986549 -64876078 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr9 52986859 52986888 -64875739 + AT_rich Low_complexity Low_complexity 1 29 0 22 56 0 0 chr9 52987285 52987321 -64875306 + AT_rich Low_complexity Low_complexity 1 36 0 209 98 24 0 chr9 52991775 52991816 -64870811 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 236 297 155 18 chr9 52993014 52993233 -64869394 - MARNA DNA Mariner -193 393 145 185 339 0 0 chr9 52993374 52993430 -64869197 + MIR SINE MIR 13 68 -194 1252 209 58 102 chr9 52993470 52993796 -64868831 - L1ME1 LINE L1 -5 6161 5865 2432 98 6 0 chr9 52993796 52994144 -64868483 + L1PA14 LINE L1 5810 6159 -2 1252 209 58 102 chr9 52994144 52994335 -64868292 - L1ME1 LINE L1 -301 5865 5667 509 296 199 5 chr9 52994338 52994534 -64868093 - L2 LINE L2 -239 3074 2841 580 324 11 27 chr9 52996459 52996644 -64865983 + MER91A DNA MER1_type 1 182 -14 2257 101 3 0 chr9 52996845 52997132 -64865495 + AluSg SINE Alu 1 288 -22 333 145 0 0 chr9 52998493 52998555 -64864072 + (TA)n Simple_repeat Simple_repeat 2 63 0 248 336 27 9 chr9 52998810 52998920 -64863707 + MIR SINE MIR 84 195 -67 188 360 169 11 chr9 52999887 53000076 -64862551 + L2 LINE L2 2555 2773 -541 2231 89 3 0 chr9 53001519 53001826 -64860801 + AluSq SINE Alu 1 308 0 375 248 37 0 chr9 53003371 53003480 -64859147 + MER81 DNA DNA 1 113 -1 237 239 30 15 chr9 53004971 53005038 -64857589 - L2 LINE L2 0 3272 3205 28 0 0 0 chr9 53006217 53006245 -64856382 + AT_rich Low_complexity Low_complexity 1 28 0 187 295 89 45 chr9 53006573 53006685 -64855942 - L2 LINE L2 -31 3241 3125 185 308 0 15 chr9 53006727 53006792 -64855835 + L2 LINE L2 3209 3272 0 243 170 0 0 chr9 53006796 53006843 -64855784 + (TGGA)n Simple_repeat Simple_repeat 3 49 0 511 300 117 14 chr9 53007771 53007994 -64854633 + MIR SINE MIR 9 254 -8 304 336 107 0 chr9 53009027 53009158 -64853469 - MIR SINE MIR -5 257 113 669 344 89 30 chr9 53009183 53009654 -64852973 - L2 LINE L2 0 3313 2815 887 187 94 0 chr9 53009748 53009919 -64852708 + MER5A DNA MER1_type 2 188 -1 798 255 42 5 chr9 53010742 53010958 -64851669 - MER58A DNA MER1_type 0 224 1 2198 102 3 3 chr9 53010982 53011286 -64851341 - AluSc SINE Alu -5 304 1 2283 105 0 10 chr9 53011935 53012239 -64850388 - AluSx SINE Alu -11 301 1 180 0 0 0 chr9 53015024 53015044 -64847583 + (T)n Simple_repeat Simple_repeat 1 20 0 185 220 17 68 chr9 53015128 53015187 -64847440 + L2 LINE L2 1486 1541 -1773 22 0 0 0 chr9 53015236 53015258 -64847369 + AT_rich Low_complexity Low_complexity 1 22 0 490 229 156 41 chr9 53015444 53015662 -64846965 + MIR SINE MIR 20 262 0 640 255 0 20 chr9 53015678 53015831 -64846796 - MER5A DNA MER1_type -30 159 10 398 264 12 25 chr9 53018426 53018589 -64844038 - MER103 DNA DNA -1 165 5 2103 109 14 0 chr9 53019323 53019608 -64843019 - AluSx SINE Alu -19 293 5 232 272 72 16 chr9 53019699 53019824 -64842803 - LTR67 LTR ERVL -2 555 424 1812 185 72 116 chr9 53019877 53020243 -64842384 - L1ME2 LINE L1 -9 6155 5773 343 169 68 0 chr9 53020243 53020302 -64842325 + MER2 DNA MER2_type 283 345 0 1812 185 72 116 chr9 53020302 53020585 -64842042 - L1ME2 LINE L1 -391 5773 5479 204 40 0 0 chr9 53020694 53020719 -64841908 + (TA)n Simple_repeat Simple_repeat 2 26 0 274 232 91 0 chr9 53022574 53022673 -64839954 + MER97c DNA MER1_type? 43 150 -940 595 274 101 9 chr9 53024178 53024397 -64838230 + MIR SINE MIR 9 247 -15 336 83 0 0 chr9 53024656 53024704 -64837923 + (T)n Simple_repeat Simple_repeat 1 48 0 2067 122 24 3 chr9 53024855 53025149 -64837478 + AluSx SINE Alu 1 300 -12 522 154 143 0 chr9 53025170 53025261 -64837366 + MER3 DNA MER1_type 13 116 -93 427 134 0 15 chr9 53025369 53025436 -64837191 - AluS SINE Alu -244 66 1 819 140 0 0 chr9 53026024 53026167 -64836460 + (GAATG)n Simple_repeat Simple_repeat 3 145 0 551 307 57 20 chr9 53026272 53026572 -64836055 - L1ME LINE L1 -317 5804 5494 204 211 0 0 chr9 53026572 53026610 -64836017 + GA-rich Low_complexity Low_complexity 1 38 0 533 321 161 26 chr9 53026962 53027759 -64834868 - L1ME LINE L1 -1120 5026 4123 2270 102 3 13 chr9 53027834 53028147 -64834480 + AluSx SINE Alu 1 310 -2 431 241 0 71 chr9 53029262 53029403 -64833224 + MIR3 SINE MIR 78 208 0 364 137 96 0 chr9 53030834 53030907 -64831720 - L1MA8 LINE L1 0 6291 6212 180 280 25 85 chr9 53031060 53031178 -64831449 - MIR3 SINE MIR -48 160 50 428 277 15 39 chr9 53031412 53031542 -64831085 + L2 LINE L2 3187 3313 0 29 0 0 0 chr9 53031612 53031641 -64830986 + AT_rich Low_complexity Low_complexity 1 29 0 2107 170 185 23 chr9 53032452 53032934 -64829693 - MER68 LTR ERV1 -2 560 1 1354 212 44 73 chr9 53032963 53033445 -64829182 - LTR37B LTR ERV1 0 468 1 251 301 192 10 chr9 53034103 53034296 -64828331 - MIR SINE MIR -11 251 24 628 333 6 0 chr9 53036416 53036599 -64826028 + MIR SINE MIR 49 232 -30 1653 156 81 27 chr9 53036673 53037045 -64825582 - Charlie5 DNA MER1_type 0 2624 2233 490 217 53 59 chr9 53037053 53037205 -64825422 - MER3 DNA MER1_type -87 122 19 27 0 0 0 chr9 53037826 53037853 -64824774 + AT_rich Low_complexity Low_complexity 1 27 0 22 56 0 19 chr9 53038027 53038056 -64824571 + AT_rich Low_complexity Low_complexity 1 30 -23 1712 142 38 24 chr9 53038056 53038345 -64824282 - AluJo SINE Alu -19 293 1 22 56 0 19 chr9 53038345 53038369 -64824258 + AT_rich Low_complexity Low_complexity 30 53 0 2573 132 41 34 chr9 53040660 53041098 -64821529 - L1MC1 LINE L1 0 6333 5893 553 251 56 11 chr9 53041144 53041323 -64821304 - L1ME4a LINE L1 -209 5912 5726 180 274 55 27 chr9 53041354 53041427 -64821200 - MIR SINE MIR -77 185 111 531 164 77 17 chr9 53041504 53041619 -64821008 - MER5B DNA MER1_type -56 133 1 292 196 186 31 chr9 53041653 53041750 -64820877 + MIR3 SINE MIR 97 208 0 407 257 129 14 chr9 53042022 53042162 -64820465 + MIR SINE MIR 21 176 -86 1418 122 51 0 chr9 53042560 53042774 -64819853 + AluSg/x SINE Alu 79 303 -7 633 257 102 73 chr9 53043091 53043433 -64819194 + HsTC2 DNA Tc2 2 353 -1545 630 177 51 6 chr9 53043412 53043570 -64819057 + HsTC2 DNA Tc2 1734 1898 0 * 208 147 0 0 chr9 53044091 53044125 -64818502 + (A)n Simple_repeat Simple_repeat 1 34 0 197 159 23 0 chr9 53044134 53044178 -64818449 + CT-rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr9 53045046 53045068 -64817559 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr9 53046260 53046288 -64816339 + AT_rich Low_complexity Low_complexity 1 28 0 270 286 21 111 chr9 53047357 53047546 -64815081 - MIR SINE MIR -14 248 77 216 293 0 0 chr9 53049433 53049474 -64813153 - L2 LINE L2 -96 3176 3136 2131 163 45 0 chr9 53049772 53050104 -64812523 - MER7A DNA MER2_type 0 346 2 922 251 23 23 chr9 53050345 53050644 -64811983 + L2 LINE L2 2120 2418 -896 539 299 247 21 chr9 53050654 53051275 -64811352 + L2 LINE L2 2527 3313 0 421 285 185 25 chr9 53051973 53052173 -64810454 - MIR SINE MIR 0 262 31 578 286 57 80 chr9 53052815 53053305 -64809322 + L2 LINE L2 2444 2922 -392 206 219 0 0 chr9 53053644 53053685 -64808942 + (TGAA)n Simple_repeat Simple_repeat 3 43 0 829 218 82 74 chr9 53054046 53054449 -64808178 + MLT1E3 LTR MaLR 83 624 0 930 253 56 0 chr9 53054529 53054762 -64807865 + MIR SINE MIR 15 260 -2 185 346 225 8 chr9 53054765 53055152 -64807475 + L2 LINE L2 2434 2904 -410 214 122 24 24 chr9 53055155 53055196 -64807431 + CT-rich Low_complexity Low_complexity 2 42 0 401 322 41 7 chr9 53055308 53055454 -64807173 + L2 LINE L2 3122 3272 0 957 201 43 27 chr9 53056723 53056907 -64805720 - MER5A DNA MER1_type 0 189 3 436 259 133 0 chr9 53056955 53057090 -64805537 + MIR SINE MIR 49 201 -61 2225 128 7 0 chr9 53057233 53057538 -64805089 - AluSx SINE Alu -5 307 1 2319 108 0 3 chr9 53057573 53057878 -64804749 - AluSc SINE Alu -5 304 1 763 121 0 9 chr9 53057879 53057995 -64804632 - MER4A LTR ERV1 -549 115 1 639 228 41 41 chr9 53060312 53060483 -64802144 - MER91A DNA MER1_type -11 185 15 1807 90 0 115 chr9 53062498 53062820 -64799807 - AluSx SINE Alu -13 299 15 302 303 189 8 chr9 53062949 53063071 -64799556 + L2 LINE L2 3129 3272 0 251 191 16 0 chr9 53063525 53063588 -64799039 + GA-rich Low_complexity Low_complexity 4 67 0 3560 141 4 0 chr9 53065052 53065550 -64797077 + MER1A DNA MER1_type 1 500 -29 2489 113 16 16 chr9 53065550 53065923 -64796704 - THE1C LTR MaLR 0 375 3 528 226 24 24 chr9 53066998 53067122 -64795505 + MER5A DNA MER1_type 1 124 -65 537 305 127 31 chr9 53068746 53069100 -64793527 + Charlie8 DNA MER1_type 71 458 -1959 319 236 62 104 chr9 53069179 53069323 -64793304 + MIR SINE MIR 125 262 0 375 314 184 7 chr9 53069421 53069698 -64792929 + L2 LINE L2 2988 3313 0 358 331 63 16 chr9 53069702 53069829 -64792798 + MIR3 SINE MIR 7 139 -69 186 133 0 0 chr9 53069831 53069861 -64792766 + (GAA)n Simple_repeat Simple_repeat 2 31 0 181 122 0 73 chr9 53070332 53070373 -64792254 - L2 LINE L2 -1276 2038 2001 1914 146 3 26 chr9 53072012 53072314 -64790313 + AluJb SINE Alu 1 295 -17 300 288 0 0 chr9 53072350 53072430 -64790197 - MER116 DNA Mariner 0 80 1 2239 119 0 3 chr9 53073939 53074251 -64788376 + AluSx SINE Alu 1 311 -1 267 354 0 24 chr9 53074310 53074442 -64788185 + MIR SINE MIR 20 148 -60 2351 108 0 0 chr9 53075686 53075993 -64786634 + AluSx SINE Alu 1 307 -5 469 203 211 16 chr9 53076396 53076524 -64786103 - MER5A DNA MER1_type -6 183 31 1108 147 22 31 chr9 53076612 53076837 -64785790 - L1MA4 LINE L1 -1 6299 6077 1940 162 0 7 chr9 53078467 53078763 -64783864 + AluJb SINE Alu 1 294 -18 202 345 36 0 chr9 53080349 53080433 -64782194 - L2 LINE L2 -632 2682 2596 2106 248 48 42 chr9 53080506 53080577 -64782050 + L1MC4a LINE L1 5361 5430 -2378 2346 92 0 25 chr9 53080577 53080893 -64781734 + AluSx SINE Alu 1 308 -4 2106 248 48 42 chr9 53080893 53081365 -64781262 + L1MC4a LINE L1 5430 5911 -1897 6130 64 14 13 chr9 53081365 53082144 -64780483 - LTR17 LTR ERV1 0 780 1 2106 248 48 42 chr9 53082144 53082285 -64780342 + L1MC4a LINE L1 5911 6050 -1758 2368 91 0 10 chr9 53082301 53082609 -64780018 - AluSg SINE Alu -5 305 1 796 173 0 0 chr9 53082628 53082755 -64779872 - FLAM_C SINE Alu -6 127 1 677 275 105 56 chr9 53082814 53083303 -64779324 + L1MC4 LINE L1 6936 7453 -589 1544 162 88 3 chr9 53083303 53083587 -64779040 - AluJo SINE Alu -4 308 1 677 275 105 56 chr9 53083587 53083613 -64779014 + L1MC4 LINE L1 7453 7476 -566 994 236 34 5 chr9 53083620 53083828 -64778799 + MER20 DNA MER1_type 1 214 -5 4670 160 32 67 chr9 53084030 53084232 -64778395 + L1MC3 LINE L1 6652 6860 -925 288 83 0 62 chr9 53084232 53084280 -64778347 + tRNA-Cys-TGC tRNA tRNA 2 46 -29 4670 160 32 67 chr9 53084280 53084549 -64778078 + L1MC3 LINE L1 6860 7137 -648 2249 103 10 0 chr9 53084549 53084840 -64777787 + AluSc SINE Alu 1 294 -15 4670 160 32 67 chr9 53084840 53085325 -64777302 + L1MC3 LINE L1 7137 7621 -164 688 248 3 9 chr9 53085324 53085507 -64777120 + L1ME1 LINE L1 6011 6332 -2 * 1605 204 3 0 chr9 53085512 53085806 -64776821 + AluJo SINE Alu 3 297 -15 2421 87 0 10 chr9 53085806 53086118 -64776509 + AluSg1 SINE Alu 1 309 0 483 313 67 19 chr9 53086189 53086397 -64776230 - MIR SINE MIR -3 259 42 2276 62 0 14 chr9 53086510 53086827 -64775800 + AluY SINE Alu 1 313 0 1174 260 104 7 chr9 53088457 53088786 -64773841 - MLT1I LTR MaLR -46 363 8 186 246 200 0 chr9 53089285 53089350 -64773277 - L2 LINE L2 -8 3305 3228 322 237 41 124 chr9 53089393 53089529 -64773098 - MER5B DNA MER1_type 0 178 61 2070 154 0 0 chr9 53089529 53089827 -64772800 + AluJb SINE Alu 1 298 -14 322 237 41 124 chr9 53089827 53089884 -64772743 - MER5B DNA MER1_type -117 61 1 1475 205 0 45 chr9 53090063 53090375 -64772252 + AluJo SINE Alu 1 298 -14 552 229 8 8 chr9 53090379 53090497 -64772130 - MIR SINE MIR -113 149 32 291 173 53 13 chr9 53091628 53091703 -64770924 + L2 LINE L2 3182 3259 -13 785 283 67 43 chr9 53093714 53093981 -64768646 + L2 LINE L2 2812 3096 -217 291 28 0 0 chr9 53093981 53094017 -64768610 + (CA)n Simple_repeat Simple_repeat 2 37 0 785 283 67 43 chr9 53094017 53094209 -64768418 + L2 LINE L2 3096 3282 -31 204 243 14 54 chr9 53094353 53094427 -64768200 + MIR3 SINE MIR 89 159 -49 359 219 102 44 chr9 53094637 53094774 -64767853 + MIR SINE MIR 57 201 -61 2142 227 105 36 chr9 53094775 53095356 -64767271 + MLT1E2 LTR MaLR 1 621 -5 213 259 0 0 chr9 53095362 53095420 -64767207 + MIR SINE MIR 194 251 -11 465 268 45 17 chr9 53095639 53095818 -64766809 + L1MC4a LINE L1 7280 7463 -345 1101 219 51 45 chr9 53095831 53096142 -64766485 + L1 LINE L1 4172 4484 -1662 4466 29 2 0 chr9 53096144 53096663 -64765964 - L1P LINE L1 -1607 4539 4020 7741 31 0 0 chr9 53096663 53098316 -64764311 + L1PA3 LINE L1 4503 6155 0 4867 152 66 22 chr9 53098321 53099944 -64762683 + L1PA16 LINE L1 4477 6166 0 1356 204 94 52 chr9 53099953 53100440 -64762187 + L1MC4 LINE L1 7557 7995 0 2902 3 3 0 chr9 53101910 53102220 -64760407 - AluYa5 SINE Alu 0 311 1 689 214 31 13 chr9 53102442 53102601 -64760026 + MIR SINE MIR 1 162 -100 23 68 0 0 chr9 53102649 53102693 -64759934 + AT_rich Low_complexity Low_complexity 1 44 0 350 239 71 18 chr9 53102694 53102807 -64759820 - MIR SINE MIR -73 189 71 671 167 54 25 chr9 53103356 53103545 -64759082 + MIR SINE MIR 15 207 -55 1905 158 0 0 chr9 53104265 53104572 -64758055 - AluSx SINE Alu 0 307 1 2020 128 24 0 chr9 53104629 53104917 -64757710 - AluSg SINE Alu -15 295 1 1951 138 14 51 chr9 53105067 53105438 -64757189 + THE1B LTR MaLR 1 357 -7 1457 183 17 21 chr9 53106184 53106473 -64756154 - AluJo SINE Alu -24 288 1 253 313 0 0 chr9 53106622 53106702 -64755925 + MIR SINE MIR 65 144 -118 285 27 27 0 chr9 53107150 53107187 -64755440 + MSTA LTR MaLR 1 38 -390 2253 111 0 0 chr9 53107677 53107974 -64754653 - AluSp SINE Alu -16 297 1 1107 197 169 8 chr9 53109110 53109364 -64753263 - AluSg SINE Alu -5 295 1 2040 128 20 3 chr9 53109656 53109953 -64752674 - AluSx SINE Alu -10 302 1 2154 136 0 0 chr9 53109957 53110258 -64752369 - AluSx SINE Alu -11 301 1 271 186 114 0 chr9 53111109 53111179 -64751448 - MER5B DNA MER1_type -13 165 88 286 289 39 0 chr9 53111229 53111333 -64751294 - MIR SINE MIR -96 166 59 2276 95 3 7 chr9 53111369 53111665 -64750962 - AluSp SINE Alu -18 295 1 1897 165 0 26 chr9 53111821 53112130 -64750497 + AluJo SINE Alu 1 301 -11 2052 176 66 58 chr9 53112378 53112682 -64749945 - MLT1D LTR MaLR -1 504 193 2563 64 0 0 chr9 53112682 53112978 -64749649 - AluY SINE Alu -15 296 1 2052 176 66 58 chr9 53112978 53113172 -64749455 - MLT1D LTR MaLR -312 193 2 33 43 0 0 chr9 53113711 53113758 -64748869 + AT_rich Low_complexity Low_complexity 1 47 0 1040 109 0 14 chr9 53113758 53113896 -64748731 - AluJo SINE Alu -176 136 1 1469 243 118 36 chr9 53114200 53114504 -64748123 + L1MC4 LINE L1 7221 7499 -543 2349 114 0 0 chr9 53114504 53114810 -64747817 - AluSg SINE Alu -4 306 1 1469 243 118 36 chr9 53114810 53114903 -64747724 + L1MC4 LINE L1 7499 7583 -459 1553 142 3 94 chr9 53114903 53115242 -64747385 + AluJo SINE Alu 1 308 -4 1820 140 3 62 chr9 53115244 53115566 -64747061 + AluSx SINE Alu 1 303 -9 1469 243 118 36 chr9 53115566 53115801 -64746826 + L1MC4 LINE L1 7583 7909 -133 237 197 0 0 chr9 53115826 53115887 -64746740 + GA-rich Low_complexity Low_complexity 1 61 0 335 214 26 77 chr9 53115897 53116014 -64746613 + L1MC4 LINE L1 7922 8032 -10 230 270 22 22 chr9 53116819 53116908 -64745719 + L2 LINE L2 3224 3312 -1 2274 121 0 0 chr9 53116965 53117270 -64745357 + AluJo SINE Alu 1 305 -7 804 144 0 0 chr9 53117270 53117388 -64745239 - AluJb SINE Alu -194 118 1 199 333 12 0 chr9 53117394 53117478 -64745149 + L2 LINE L2 2927 3011 -302 407 214 61 0 chr9 53117579 53117677 -64744950 + L2 LINE L2 3180 3283 -30 1347 159 107 16 chr9 53117830 53117952 -64744675 - AluSx SINE Alu -37 275 166 189 0 0 0 chr9 53117952 53117973 -64744654 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 1347 159 107 16 chr9 53117973 53118102 -64744525 - AluSx SINE Alu -146 166 1 2206 125 0 0 chr9 53118113 53118402 -64744225 - AluSx SINE Alu -23 289 1 302 210 83 112 chr9 53119929 53120134 -64742493 - L1M4 LINE L1 -1446 4700 4502 2440 82 0 0 chr9 53120177 53120471 -64742156 - AluSg SINE Alu -16 294 1 252 341 67 30 chr9 53120786 53120921 -64741706 + L2 LINE L2 3133 3272 0 231 280 55 70 chr9 53120945 53120992 -64741635 - L1MEd LINE L1 -4905 1214 1168 2259 88 20 0 chr9 53120992 53121287 -64741340 + AluSx SINE Alu 1 301 -11 231 280 55 70 chr9 53121287 53121560 -64741067 - L1MEd LINE L1 -4951 1168 899 1874 150 0 33 chr9 53121560 53121867 -64740760 + AluJb SINE Alu 1 297 -15 231 280 55 70 chr9 53121867 53121945 -64740682 - L1MEd LINE L1 -5220 899 821 849 120 8 0 chr9 53122103 53122220 -64740407 - FLAM_C SINE Alu -25 118 1 574 370 69 35 chr9 53123249 53123793 -64738834 + L2 LINE L2 2201 2772 -542 1989 147 20 0 chr9 53123793 53123958 -64738669 - AluSx SINE Alu -14 298 123 387 0 0 0 chr9 53123958 53124001 -64738626 + (TG)n Simple_repeat Simple_repeat 2 44 0 1989 147 20 0 chr9 53124001 53124127 -64738500 - AluSx SINE Alu -189 123 1 574 370 69 35 chr9 53124127 53124220 -64738407 + L2 LINE L2 2772 2860 -454 1220 168 161 4 chr9 53124516 53124796 -64737831 - MER33 DNA MER1_type 0 324 1 1241 139 16 0 chr9 53125595 53125789 -64736838 - L1PA16 LINE L1 -5 6161 5965 464 17 33 0 chr9 53125789 53125849 -64736778 + (TTTTA)n Simple_repeat Simple_repeat 2 63 0 804 226 0 0 chr9 53125883 53126029 -64736598 - AluSg/x SINE Alu -43 269 124 2286 80 0 14 chr9 53126030 53126341 -64736286 - AluY SINE Alu 0 307 1 2248 115 0 0 chr9 53126343 53126639 -64735988 - AluSx SINE Alu -16 296 1 1560 154 21 14 chr9 53126642 53126923 -64735704 - L1 LINE L1 -1126 5020 4738 37 39 0 0 chr9 53127176 53127227 -64735400 + AT_rich Low_complexity Low_complexity 1 51 0 244 226 0 0 chr9 53127683 53127745 -64734882 + T-rich Low_complexity Low_complexity 1 62 0 925 91 8 0 chr9 53128230 53128351 -64734276 + AluSq/x SINE Alu 1 122 -191 204 135 0 0 chr9 53128372 53128409 -64734218 + (A)n Simple_repeat Simple_repeat 1 37 0 2398 119 8 40 chr9 53128494 53128608 -64734019 - L1MA7 LINE L1 0 6291 6175 1663 145 3 108 chr9 53128608 53128746 -64733881 + AluJb SINE Alu 1 85 -227 2038 137 3 7 chr9 53128746 53129038 -64733589 + AluSx SINE Alu 1 291 -21 1663 145 3 108 chr9 53129038 53129231 -64733396 + AluJb SINE Alu 85 297 -15 2398 119 8 40 chr9 53129231 53129511 -64733116 - L1MA7 LINE L1 -116 6175 5910 2451 79 0 13 chr9 53129608 53129923 -64732704 + AluY SINE Alu 1 311 0 759 180 8 0 chr9 53130623 53130745 -64731882 + FLAM_A SINE Alu 14 136 -6 312 283 79 86 chr9 53130745 53130897 -64731730 + MIR3 SINE MIR 20 170 -38 21 0 0 0 chr9 53132141 53132162 -64730465 + AT_rich Low_complexity Low_complexity 1 21 0 315 0 0 0 chr9 53132402 53132437 -64730190 + (CA)n Simple_repeat Simple_repeat 2 36 0 1926 168 0 9 chr9 53133013 53133328 -64729299 + AluJo SINE Alu 1 312 0 452 265 17 8 chr9 53133334 53133451 -64729176 + MIR SINE MIR 25 142 -66 451 222 126 0 chr9 53133457 53133592 -64729035 - MER102b DNA MER1_type -1 340 189 21 0 0 0 chr9 53134453 53134474 -64728153 + AT_rich Low_complexity Low_complexity 1 21 0 362 294 133 21 chr9 53135290 53135433 -64727194 + MIR3 SINE MIR 15 173 -35 1612 179 29 81 chr9 53135955 53136004 -64726623 - MLT1C LTR MaLR -4 463 413 862 125 16 0 chr9 53136004 53136132 -64726495 + FLAM_C SINE Alu 1 130 -3 1612 179 29 81 chr9 53136132 53136491 -64726136 - MLT1C LTR MaLR -54 413 76 233 313 41 105 chr9 53136664 53136941 -64725686 + L2 LINE L2 2505 2747 -567 2407 90 0 7 chr9 53136941 53137251 -64725376 + AluSc SINE Alu 1 308 -1 233 313 41 105 chr9 53137251 53137392 -64725235 + L2 LINE L2 2747 2896 -418 203 283 17 83 chr9 53137539 53137659 -64724968 + L2 LINE L2 2934 3045 -227 267 31 0 0 chr9 53138013 53138045 -64724582 + (TA)n Simple_repeat Simple_repeat 2 33 0 1604 170 0 53 chr9 53138113 53138396 -64724231 - AluJo SINE Alu -44 268 1 1722 284 45 30 chr9 53138418 53139172 -64723455 - L1MEd LINE L1 -4906 1213 449 1448 193 124 37 chr9 53139197 53139545 -64723082 - MSTB LTR MaLR 0 426 49 21 71 0 0 chr9 53139545 53139587 -64723040 + AT_rich Low_complexity Low_complexity 1 42 0 2173 133 0 0 chr9 53139871 53140173 -64722454 - AluSx SINE Alu -10 302 1 181 344 70 16 chr9 53140318 53140446 -64722181 + L2 LINE L2 3167 3301 -12 41 0 0 0 chr9 53140660 53140701 -64721926 + AT_rich Low_complexity Low_complexity 1 41 0 663 288 102 22 chr9 53140783 53141193 -64721434 + L2 LINE L2 2677 3119 -194 456 233 78 9 chr9 53141217 53141333 -64721294 - L2 LINE L2 -1 3312 3189 2010 109 21 11 chr9 53141394 53141678 -64720949 + AluSx SINE Alu 1 287 -25 22 56 0 0 chr9 53141679 53141715 -64720912 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr9 53143069 53143091 -64719536 + AT_rich Low_complexity Low_complexity 1 22 0 273 119 0 0 chr9 53143124 53143166 -64719461 + (TCTA)n Simple_repeat Simple_repeat 3 44 0 8311 129 43 16 chr9 53143311 53143365 -64719262 + Tigger1 DNA MER2_type 1 52 -2366 8337 17 0 0 chr9 53143365 53144444 -64718183 - L1PA2 LINE L1 -5 6150 5072 8311 129 43 16 chr9 53144444 53144908 -64717719 + Tigger1 DNA MER2_type 52 502 -1916 1966 137 20 0 chr9 53144908 53145208 -64717419 + AluJo SINE Alu 1 306 -6 8311 129 43 16 chr9 53145208 53146025 -64716602 + Tigger1 DNA MER2_type 502 1372 -1046 21 36 0 0 chr9 53146315 53146343 -64716284 + AT_rich Low_complexity Low_complexity 1 28 0 2388 90 0 0 chr9 53147969 53148269 -64714358 - AluY SINE Alu -11 300 1 573 163 20 0 chr9 53148807 53148905 -64713722 + FLAM_C SINE Alu 21 120 -23 624 192 0 0 chr9 53149000 53149099 -64713528 + FLAM_C SINE Alu 22 120 -23 620 26 13 0 chr9 53149980 53150058 -64712569 + (CA)n Simple_repeat Simple_repeat 1 79 0 344 339 96 0 chr9 53150450 53150565 -64712062 + L3 LINE CR1 627 752 -825 396 207 216 0 chr9 53151213 53151329 -64711298 - MER58B DNA MER1_type 0 341 201 371 321 31 19 chr9 53151403 53151562 -64711065 - MIR3 SINE MIR -32 176 16 190 308 31 0 chr9 53153544 53153609 -64709018 - MIR SINE MIR -74 134 68 1562 111 9 13 chr9 53153948 53154174 -64708453 - AluSg/x SINE Alu -1 311 87 2149 128 7 0 chr9 53154426 53154722 -64707905 + AluSx SINE Alu 2 299 -13 22 0 0 0 chr9 53154892 53154914 -64707713 + AT_rich Low_complexity Low_complexity 1 22 0 443 280 100 13 chr9 53155048 53155198 -64707429 + MIR SINE MIR 40 202 -60 2027 106 11 11 chr9 53155381 53155692 -64706935 + AluSq SINE Alu 1 311 0 802 157 0 116 chr9 53156602 53156774 -64705853 - FRAM SINE Alu -14 152 1 1430 134 18 13 chr9 53156862 53157086 -64705541 + AluSg/x SINE Alu 86 310 0 203 128 0 51 chr9 53159343 53159382 -64703245 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 2102 121 6 16 chr9 53159897 53160212 -64702415 + AluSx SINE Alu 1 312 0 605 144 93 34 chr9 53160988 53161106 -64701521 - MER63 DNA MER1_type -84 752 2 656 298 27 5 chr9 53161190 53161378 -64701249 + MIR SINE MIR 27 218 -44 2226 120 10 0 chr9 53161501 53161810 -64700817 + AluSx SINE Alu 1 312 0 449 268 74 85 chr9 53161933 53162071 -64700556 + L1ME4a LINE L1 5684 5822 -299 1903 146 3 3 chr9 53162071 53162365 -64700262 + AluSx SINE Alu 1 294 -18 449 268 74 85 chr9 53162365 53162603 -64700024 + L1ME4a LINE L1 5822 6056 -65 601 281 51 13 chr9 53163066 53163301 -64699326 + L1MC4a LINE L1 5697 5940 -1868 21 36 0 0 chr9 53163365 53163393 -64699234 + AT_rich Low_complexity Low_complexity 1 28 0 222 37 0 0 chr9 53163467 53163494 -64699133 + (T)n Simple_repeat Simple_repeat 1 27 0 838 200 0 0 chr9 53163709 53163849 -64698778 - FLAM_C SINE Alu -3 140 1 2168 128 0 0 chr9 53164400 53164697 -64697930 + AluSx SINE Alu 1 297 -15 465 239 26 8 chr9 53165045 53165162 -64697465 - MIR SINE MIR -43 219 101 485 228 55 8 chr9 53165168 53165295 -64697332 - MIR SINE MIR -29 233 101 489 250 52 7 chr9 53165301 53165437 -64697190 - MIR SINE MIR -29 233 92 472 226 57 8 chr9 53165437 53165561 -64697066 - MIR SINE MIR -32 230 101 489 250 52 7 chr9 53165567 53165703 -64696924 - MIR SINE MIR -29 233 92 472 226 57 8 chr9 53165703 53165827 -64696800 - MIR SINE MIR -32 230 101 485 228 55 8 chr9 53165833 53165960 -64696667 - MIR SINE MIR -29 233 101 502 243 52 7 chr9 53165966 53166102 -64696525 - MIR SINE MIR -29 233 92 476 248 53 8 chr9 53166102 53166235 -64696392 - MIR SINE MIR -32 230 92 457 234 57 8 chr9 53166235 53166359 -64696268 - MIR SINE MIR -32 230 101 485 228 55 8 chr9 53166365 53166492 -64696135 - MIR SINE MIR -29 233 101 489 250 52 7 chr9 53166498 53166634 -64695993 - MIR SINE MIR -29 233 92 * 614 260 68 10 chr9 53166631 53166823 -64695804 - MIR SINE MIR -29 233 31 261 208 28 14 chr9 53166848 53166920 -64695707 + GA-rich Low_complexity Low_complexity 4 76 0 2152 109 3 0 chr9 53167495 53167803 -64694824 + AluSx SINE Alu 1 309 0 210 310 0 17 chr9 53168119 53168177 -64694450 + L3b LINE CR1 1519 1575 -8 1936 176 0 0 chr9 53168515 53168810 -64693817 + AluJo SINE Alu 1 295 -17 1728 153 64 3 chr9 53168991 53169273 -64693354 + AluSx SINE Alu 1 299 -13 2107 105 0 0 chr9 53169564 53169841 -64692786 + AluSx SINE Alu 21 297 -15 1708 131 91 0 chr9 53170672 53170946 -64691681 + AluJo SINE Alu 1 299 -13 362 239 115 15 chr9 53171216 53171346 -64691281 - MLT1L LTR MaLR -10 605 463 785 189 0 0 chr9 53171448 53171570 -64691057 - AluJb SINE Alu -189 123 2 573 140 84 0 chr9 53171572 53171679 -64690948 + Tigger1 DNA MER2_type 1451 1566 -852 1144 120 69 0 chr9 53171743 53171918 -64690709 - AluJo SINE Alu -4 308 122 239 29 57 0 chr9 53171926 53171961 -64690666 + (TTTC)n Simple_repeat Simple_repeat 3 39 0 1450 179 114 0 chr9 53171963 53172236 -64690391 - AluJb SINE Alu -4 308 5 1408 83 83 0 chr9 53172253 53172445 -64690182 - L1PA16 LINE L1 -9 6157 5950 5770 105 46 2 chr9 53172445 53173275 -64689352 + Tigger1 DNA MER2_type 1553 2418 0 2727 113 3 22 chr9 53173842 53174141 -64688486 + THE1B LTR MaLR 1 293 -71 2426 96 3 0 chr9 53174141 53174453 -64688174 - AluSp SINE Alu 0 313 1 2727 113 3 22 chr9 53174453 53174524 -64688103 + THE1B LTR MaLR 293 364 0 23 33 0 0 chr9 53174539 53174569 -64688058 + AT_rich Low_complexity Low_complexity 1 30 0 392 270 144 37 chr9 53175469 53175684 -64686943 - MLT1L LTR MaLR -244 371 134 2147 127 10 0 chr9 53175847 53176155 -64686472 + AluSp SINE Alu 1 311 -2 621 289 84 9 chr9 53176615 53176840 -64685787 - MIR SINE MIR -6 256 15 1648 132 11 103 chr9 53176873 53177164 -64685463 - L1MB7 LINE L1 0 6184 5933 749 175 7 44 chr9 53177164 53177301 -64685326 + FLAM_A SINE Alu 1 132 -1 1648 132 11 103 chr9 53177301 53177379 -64685248 - L1MB7 LINE L1 -251 5933 5849 2096 108 0 17 chr9 53178259 53178556 -64684071 - AluSg SINE Alu -18 292 1 2064 113 28 3 chr9 53178581 53178863 -64683764 - AluSq SINE Alu -17 296 8 2032 112 50 0 chr9 53179258 53179536 -64683091 - AluSq SINE Alu -10 303 12 198 71 0 0 chr9 53179545 53179573 -64683054 + (T)n Simple_repeat Simple_repeat 1 28 0 266 234 56 0 chr9 53179905 53179991 -64682636 - MER77 LTR ERV1 -467 138 54 1760 150 0 46 chr9 53180074 53180381 -64682246 + AluJo SINE Alu 19 311 -1 1981 139 34 7 chr9 53180698 53180993 -64681634 + AluSx SINE Alu 1 303 -9 450 272 56 19 chr9 53181181 53181343 -64681284 + MLT1H LTR MaLR 3 170 -379 478 178 59 111 chr9 53181465 53181600 -64681027 + MLT1H LTR MaLR 432 536 -13 2588 65 0 12 chr9 53181756 53182092 -64680535 + L1PA7 LINE L1 5823 6154 0 30 69 0 0 chr9 53182412 53182470 -64680157 + AT_rich Low_complexity Low_complexity 1 58 0 1390 94 11 11 chr9 53182600 53182791 -64679836 - MER4A LTR ERV1 0 664 474 713 67 0 0 chr9 53182794 53182884 -64679743 + AluSc SINE Alu 2 91 -218 2638 166 57 46 chr9 53182894 53183796 -64678831 + LTR13 LTR ERVK 16 979 -28 236 211 53 0 chr9 53184058 53184115 -64678512 - MIR SINE MIR -139 123 64 1982 176 71 49 chr9 53184176 53184670 -64677957 - MLT1D LTR MaLR 0 505 1 259 336 0 88 chr9 53184852 53184989 -64677638 - L2 LINE L2 -4 3268 3144 1888 204 18 23 chr9 53185198 53185596 -64677031 - MSTD LTR MaLR 0 396 1 549 297 19 28 chr9 53186695 53186907 -64675720 + L2 LINE L2 3100 3309 -4 220 92 145 26 chr9 53187123 53187199 -64675428 + (TTAAA)n Simple_repeat Simple_repeat 4 88 0 1242 262 31 31 chr9 53187435 53187794 -64674833 - LTR16C LTR ERVL 0 491 133 543 329 84 36 chr9 53187911 53188543 -64674084 - L2 LINE L2 -457 2857 2196 224 279 29 0 chr9 53188762 53188830 -64673797 + MIR SINE MIR 76 145 -117 1674 186 3 3 chr9 53188933 53189223 -64673404 + AluJb SINE Alu 3 292 -20 585 277 14 33 chr9 53190074 53190293 -64672334 - MIR SINE MIR -11 251 38 252 315 108 15 chr9 53190601 53190731 -64671896 + L3 LINE CR1 1338 1479 -98 210 118 0 0 chr9 53191655 53191689 -64670938 + (CA)n Simple_repeat Simple_repeat 1 34 0 344 266 57 24 chr9 53191799 53191923 -64670704 + MIR SINE MIR 4 131 -131 338 304 0 0 chr9 53192002 53192094 -64670533 + MIR SINE MIR 171 262 0 350 286 54 9 chr9 53192098 53192210 -64670417 + MIR SINE MIR 74 190 -72 1952 122 6 70 chr9 53193004 53193332 -64669295 + AluSx SINE Alu 1 307 -5 1896 109 69 4 chr9 53194204 53194479 -64668148 - AluSg SINE Alu -9 301 9 751 264 41 5 chr9 53194754 53194974 -64667653 - MIR SINE MIR -3 259 32 362 314 48 14 chr9 53195966 53196173 -64666454 - MIR SINE MIR -34 228 15 2400 89 0 0 chr9 53197609 53197912 -64664715 + AluSx SINE Alu 1 303 -9 1853 103 29 7 chr9 53198004 53198285 -64664342 - L1MA8 LINE L1 -10 6281 5995 444 224 24 24 chr9 53198757 53198882 -64663745 + MIR SINE MIR 20 144 -118 2089 136 29 11 chr9 53199689 53200065 -64662562 - L1MB3 LINE L1 0 6183 5801 2310 90 19 13 chr9 53250762 53251073 -64611554 - AluSq SINE Alu 0 313 1 878 155 10 97 chr9 53251077 53251283 -64611344 + MER92B LTR ERV1 449 636 0 1085 256 108 53 chr9 53251384 53251950 -64610677 + MER92B-int LTR ERV1 93 689 -4247 1375 225 18 24 chr9 53251954 53252283 -64610344 - LTR53 LTR ERVL 0 519 193 2357 129 86 5 chr9 53252366 53252762 -64609865 + MSTA LTR MaLR 1 428 0 378 177 109 170 chr9 53252762 53252903 -64609724 + MER92B-int LTR ERV1 1780 1895 -3041 2313 107 0 22 chr9 53252903 53253222 -64609405 + AluSx SINE Alu 1 312 0 378 177 109 170 chr9 53253222 53253374 -64609253 + MER92B-int LTR ERV1 1895 2055 -2881 1002 123 26 7 chr9 53253376 53253531 -64609096 - MLT1B LTR MaLR 0 390 233 320 263 0 13 chr9 53253815 53253891 -64608736 + MER92B LTR ERV1 3 77 -559 * 422 214 0 58 chr9 53253861 53253964 -64608663 + MER92B LTR ERV1 531 627 -9 524 263 126 7 chr9 53254427 53254694 -64607933 + L1ME2 LINE L1 5294 5586 -729 759 204 46 46 chr9 53254797 53255057 -64607570 - LTR37A LTR ERV1 0 426 167 2104 112 40 3 chr9 53255099 53255395 -64607232 + AluSx SINE Alu 1 307 -5 527 219 19 87 chr9 53255402 53255848 -64606779 - MER34 LTR ERV1 -114 451 28 1263 184 129 29 chr9 53255848 53256126 -64606501 - AluJo SINE Alu -6 306 1 527 219 19 87 chr9 53256126 53256148 -64606479 - MER34 LTR ERV1 -537 28 6 1194 206 84 42 chr9 53256313 53256692 -64605935 + L1ME2 LINE L1 5761 6155 -9 2029 154 0 0 chr9 53256696 53257002 -64605625 - AluJb SINE Alu -6 306 1 21 0 0 0 chr9 53257435 53257456 -64605171 + AT_rich Low_complexity Low_complexity 1 21 0 1669 149 11 22 chr9 53257627 53257903 -64604724 + AluJb SINE Alu 1 273 -39 1926 153 11 0 chr9 53258008 53258295 -64604332 - AluJb SINE Alu -22 290 1 841 278 119 3 chr9 53258362 53258657 -64603970 - L1MC4a LINE L1 -1901 5907 5579 353 223 42 38 chr9 53259031 53259160 -64603467 - L1MC4a LINE L1 -572 5602 5471 1649 158 10 45 chr9 53259184 53259476 -64603151 - AluJo SINE Alu -30 282 1 1434 179 15 29 chr9 53259516 53259789 -64602838 + AluSx SINE Alu 41 309 -3 574 211 117 69 chr9 53259879 53260126 -64602501 + L2 LINE L2 1519 1777 -1537 554 260 16 0 chr9 53260128 53260255 -64602372 - MER58B DNA MER1_type -14 327 199 1573 259 89 20 chr9 53260476 53261170 -64601457 + L2 LINE L2 1780 2521 -793 891 94 0 0 chr9 53261170 53261297 -64601330 + (TTCC)n Simple_repeat Simple_repeat 3 129 0 1235 107 65 0 chr9 53261300 53261468 -64601159 - AluSx SINE Alu -24 286 108 3971 85 0 4 chr9 53261469 53261977 -64600650 + MER9 LTR ERVK 1 506 -5 874 113 0 0 chr9 53261981 53262096 -64600531 - AluSx SINE Alu -197 115 1 329 261 11 0 chr9 53262096 53262184 -64600443 + L2 LINE L2 2521 2609 -705 252 198 0 86 chr9 53262187 53262268 -64600359 - AluSp SINE Alu -109 194 121 266 208 14 42 chr9 53262289 53262361 -64600266 + L2 LINE L2 3242 3311 -2 2344 103 0 0 chr9 53262477 53262777 -64599850 - AluSx SINE Alu -12 300 1 1482 167 6 76 chr9 53262782 53263099 -64599528 - MLT1D LTR MaLR 0 505 211 565 167 10 162 chr9 53263667 53263738 -64598889 - MER5B DNA MER1_type -3 175 95 2263 100 0 0 chr9 53263738 53264027 -64598600 + AluSx SINE Alu 9 297 -15 565 167 10 162 chr9 53264027 53264094 -64598533 - MER5B DNA MER1_type -83 95 73 2319 101 0 3 chr9 53264094 53264391 -64598236 - AluSg SINE Alu -13 297 2 565 167 10 162 chr9 53264391 53264449 -64598178 - MER5B DNA MER1_type -105 73 8 2415 84 10 3 chr9 53265049 53265358 -64597269 - AluSq SINE Alu -2 311 1 2203 123 7 0 chr9 53265651 53265961 -64596666 + AluSx SINE Alu 1 312 0 567 120 188 0 chr9 53265964 53266081 -64596546 - MER5A DNA MER1_type -50 139 1 732 216 54 128 chr9 53266227 53266262 -64596365 + MER110A LTR ERV1 35 71 -397 1513 80 85 0 chr9 53266262 53266474 -64596153 - MER30 DNA MER1_type 0 230 1 732 216 54 128 chr9 53266474 53266531 -64596096 + MER110A LTR ERV1 71 131 -337 3627 116 54 32 chr9 53266531 53267126 -64595501 + MER4B LTR ERV1 1 608 -2 732 216 54 128 chr9 53267126 53267440 -64595187 + MER110A LTR ERV1 131 412 -56 4220 87 4 2 chr9 53267457 53268010 -64594617 - MER41A LTR ERV1 0 554 1 2155 61 0 0 chr9 53268055 53268319 -64594308 - L1PA5 LINE L1 0 6154 5891 234 160 0 60 chr9 53268532 53268555 -64594072 + MER103 DNA DNA 79 102 -64 1835 122 0 39 chr9 53268555 53268834 -64593793 - AluSx SINE Alu -8 304 37 234 160 0 60 chr9 53268834 53268860 -64593767 + MER103 DNA DNA 102 125 -41 1933 96 15 4 chr9 53269046 53269306 -64593321 + AluSx SINE Alu 42 304 -8 1609 163 64 69 chr9 53269446 53269838 -64592789 + MLT1B LTR MaLR 1 390 0 4346 102 81 53 chr9 53269867 53270924 -64591703 - MER11A LTR ERVK -4 1232 1 679 176 0 0 chr9 53271016 53271124 -64591503 - Tigger7 DNA MER2_type 0 2487 2380 411 208 200 24 chr9 53271125 53271250 -64591377 + LTR24 LTR ERV1 1 118 -349 3588 198 77 79 chr9 53271480 53272592 -64590035 - LTR28 LTR ERV1 -2 1726 1 1873 165 10 0 chr9 53272622 53272919 -64589708 + AluJb SINE Alu 5 304 -8 2085 227 93 57 chr9 53273072 53273123 -64589504 + MER21B LTR ERV1 21 69 -794 2027 150 7 0 chr9 53273123 53273430 -64589197 - AluSq SINE Alu -4 309 1 2085 227 93 57 chr9 53273430 53274075 -64588552 + MER21B LTR ERV1 69 742 -121 307 240 240 0 chr9 53274130 53274251 -64588376 - L1ME4a LINE L1 -20 6101 5952 2003 147 0 7 chr9 53274272 53274565 -64588062 + AluSx SINE Alu 1 291 -21 1128 187 0 20 chr9 53274574 53274772 -64587855 + AluJo SINE Alu 3 196 -116 453 129 29 0 chr9 53274922 53274992 -64587635 + AluJ/FRAM SINE Alu 221 292 -20 452 250 29 58 chr9 53275007 53275179 -64587448 + L1ME LINE L1 5373 5539 -2269 695 301 58 41 chr9 53275180 53275370 -64587257 + MLT1H LTR MaLR 1 186 -363 2499 68 7 0 chr9 53275370 53275677 -64586950 + AluY SINE Alu 1 309 -2 695 301 58 41 chr9 53275677 53275958 -64586669 + MLT1H LTR MaLR 186 549 0 708 253 43 57 chr9 53275961 53276242 -64586385 + L1ME LINE L1 5542 5818 -352 722 127 30 45 chr9 53276246 53276380 -64586247 + L1PA15 LINE L1 6034 6165 0 2552 77 3 3 chr9 53276384 53276697 -64585930 + AluSp SINE Alu 1 313 0 1259 238 59 72 chr9 53276698 53276805 -64585822 - MER92B LTR ERV1 -178 458 351 1992 133 28 69 chr9 53276805 53277121 -64585506 + THE1C LTR MaLR 1 300 -75 2470 77 7 7 chr9 53277121 53277431 -64585196 - AluSg SINE Alu 0 310 1 1992 133 28 69 chr9 53277431 53277505 -64585122 + THE1C LTR MaLR 300 375 0 1259 238 59 72 chr9 53277505 53277855 -64584772 - MER92B LTR ERV1 -285 351 7 2158 119 0 25 chr9 53277868 53278188 -64584439 - AluSx SINE Alu 0 312 1 732 204 214 15 chr9 53278353 53278894 -64583733 + LTR50 LTR ERVL 1 795 0 1832 161 3 10 chr9 53278976 53279274 -64583353 + AluJb SINE Alu 1 296 -16 832 186 0 26 chr9 53279357 53279512 -64583115 - AluJo SINE Alu -161 151 9 24 0 0 0 chr9 53279515 53279539 -64583088 + AT_rich Low_complexity Low_complexity 1 24 0 2188 125 0 0 chr9 53279539 53279834 -64582793 - AluSx SINE Alu -17 295 1 312 213 81 59 chr9 53279846 53279982 -64582645 - LTR23-int LTR ERV1 -3098 1838 1700 22 35 0 0 chr9 53279987 53280016 -64582611 + AT_rich Low_complexity Low_complexity 1 29 0 381 196 0 14 chr9 53280017 53280124 -64582503 - LTR23-int LTR ERV1 -2463 2408 1754 342 207 178 136 chr9 53280141 53280383 -64582244 + MER34 LTR ERV1 393 542 0 2747 33 0 0 chr9 53280461 53280767 -64581860 - AluY SINE Alu -5 306 1 22 0 0 0 chr9 53281445 53281467 -64581160 + GC_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr9 53283480 53283501 -64579126 + (T)n Simple_repeat Simple_repeat 1 21 0 2278 64 28 3 chr9 53283596 53283879 -64578748 + AluSg1 SINE Alu 1 290 -19 2072 127 3 7 chr9 53283893 53284184 -64578443 + AluSx SINE Alu 3 292 -20 1087 181 34 5 chr9 53284691 53284896 -64577731 - MER20 DNA MER1_type -5 214 4 526 153 359 0 chr9 53285526 53285657 -64576970 - MER45A DNA AcHobo 0 178 1 418 299 44 91 chr9 53285924 53286198 -64576429 - L2 LINE L2 -3 3269 3009 757 144 0 8 chr9 53286199 53286317 -64576310 + FLAM_C SINE Alu 1 117 -16 30 27 0 0 chr9 53286324 53286361 -64576266 + AT_rich Low_complexity Low_complexity 1 37 0 1948 162 0 3 chr9 53286499 53286802 -64575825 - AluJb SINE Alu -10 302 1 934 177 19 0 chr9 53286828 53286986 -64575641 - FAM SINE Alu -15 170 10 927 152 49 0 chr9 53287266 53287430 -64575197 - FAM SINE Alu -3 172 1 1747 117 135 0 chr9 53287443 53287709 -64574918 - AluSx SINE Alu 0 302 1 477 282 141 59 chr9 53287938 53288534 -64574093 - L2 LINE L2 -648 2666 2022 1448 181 30 23 chr9 53288588 53288887 -64573740 - AluJo SINE Alu -11 301 1 2424 81 0 0 chr9 53289330 53289627 -64573000 - AluY SINE Alu -14 297 1 642 254 17 12 chr9 53289733 53289906 -64572721 + MER5B DNA MER1_type 4 177 -1 2158 103 43 7 chr9 53290183 53290483 -64572144 - AluSx SINE Alu -1 311 1 229 220 0 0 chr9 53290612 53290662 -64571965 + Charlie7 DNA MER1_type 1429 1478 -1134 1042 289 138 13 chr9 53290819 53291441 -64571186 + Charlie7 DNA MER1_type 1473 2172 -440 242 210 0 74 chr9 53291485 53291516 -64571111 + Charlie7 DNA MER1_type 2481 2513 -99 6352 47 29 3 chr9 53291516 53292276 -64570351 + LTR17 LTR ERV1 1 780 0 242 210 0 74 chr9 53292276 53292325 -64570302 + Charlie7 DNA MER1_type 2513 2555 -57 27 49 0 0 chr9 53292450 53292491 -64570136 + AT_rich Low_complexity Low_complexity 1 41 0 2113 142 3 3 chr9 53292607 53292910 -64569717 + AluJb SINE Alu 1 303 -9 579 58 0 0 chr9 53292972 53293059 -64569568 + L1MA7 LINE L1 6201 6287 -4 1175 121 0 0 chr9 53293454 53293611 -64569016 - AluSq SINE Alu -156 157 1 606 165 33 25 chr9 53294133 53294254 -64568373 - AluJb SINE Alu -16 296 175 2047 133 3 22 chr9 53294280 53294597 -64568030 + AluSx SINE Alu 1 311 -1 2257 125 0 0 chr9 53295021 53295332 -64567295 - AluSx SINE Alu 0 312 2 230 252 67 42 chr9 53295782 53295901 -64566726 - MIR SINE MIR 0 262 141 1938 163 13 3 chr9 53296105 53296405 -64566222 + AluJb SINE Alu 1 303 -9 981 65 181 0 chr9 53297223 53297361 -64565266 - AluSg/x SINE Alu -14 298 136 545 221 76 29 chr9 53297994 53298166 -64564461 - MIR SINE MIR -14 248 69 195 42 0 0 chr9 53299193 53299217 -64563410 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1234 129 0 17 chr9 53299217 53299395 -64563232 - AluSc SINE Alu -32 277 103 206 151 0 57 chr9 53299839 53299892 -64562735 + A-rich Low_complexity Low_complexity 2 51 0 1957 104 4 0 chr9 53300097 53300347 -64562280 - AluSg SINE Alu -59 251 1 953 82 37 0 chr9 53300347 53300482 -64562145 + MER41B LTR ERV1 496 635 0 333 121 35 0 chr9 53300482 53300540 -64562087 + Alu SINE Alu 243 302 0 1497 135 34 29 chr9 53300605 53301056 -64561571 + LTR54 LTR ERV1 1 510 0 247 125 0 36 chr9 53301240 53301296 -64561331 + (GAAAA)n Simple_repeat Simple_repeat 2 55 0 492 248 56 6 chr9 53302302 53302463 -64560164 + MIR SINE MIR 86 254 -8 233 256 39 13 chr9 53302771 53302849 -64559778 + CT-rich Low_complexity Low_complexity 1 80 0 185 363 20 0 chr9 53302887 53302989 -64559638 + MIR3 SINE MIR 91 194 -14 1217 161 5 23 chr9 53303642 53303859 -64558768 + MER20 DNA MER1_type 6 218 -1 278 278 52 10 chr9 53304271 53304368 -64558259 + LTR67 LTR ERVL 457 557 0 457 363 26 4 chr9 53304598 53304824 -64557803 - MIR SINE MIR -7 255 25 243 0 0 0 chr9 53304828 53304855 -64557772 + (T)n Simple_repeat Simple_repeat 1 27 0 595 256 136 16 chr9 53304864 53305055 -64557572 + MER58A DNA MER1_type 1 214 -10 2205 107 19 7 chr9 53305055 53305363 -64557264 + AluSx SINE Alu 1 312 0 515 177 186 18 chr9 53306492 53306605 -64556022 + FLAM_A SINE Alu 2 133 0 200 231 183 19 chr9 53307195 53307299 -64555328 + L2 LINE L2 3184 3304 -9 448 250 35 0 chr9 53307674 53307790 -64554837 + L1ME3 LINE L1 5968 6087 -75 1369 215 88 34 chr9 53307795 53308237 -64554390 + MLT1C LTR MaLR 2 467 0 809 121 51 32 chr9 53308237 53308308 -64554319 + MLT1C-int LTR MaLR 1 69 -1302 2219 193 81 95 chr9 53308308 53308703 -64553924 + LTR8A LTR ERV1 1 383 -344 2307 113 0 13 chr9 53308703 53309013 -64553614 - AluY SINE Alu -5 306 1 2219 193 81 95 chr9 53309013 53309354 -64553273 + LTR8A LTR ERV1 383 727 0 809 121 51 32 chr9 53309354 53309439 -64553188 + MLT1C-int LTR MaLR 69 160 -1211 805 181 0 0 chr9 53309440 53309573 -64553054 + AluJb SINE Alu 1 133 -179 4587 210 38 14 chr9 53309580 53310505 -64552122 + MLT1C-int LTR MaLR 147 1093 -278 1246 78 0 0 chr9 53311270 53311424 -64551203 + AluSg/x SINE Alu 141 294 -18 1731 170 23 23 chr9 53311560 53311765 -64550862 - L1MB4 LINE L1 -63 6117 5910 4758 105 20 34 chr9 53311765 53312463 -64550164 + LTR12 LTR ERV1 1 688 0 1731 170 23 23 chr9 53312463 53312610 -64550017 - L1MB4 LINE L1 -269 5911 5765 7491 36 8 1 chr9 53312744 53314363 -64548264 - L1PA5 LINE L1 0 6154 4533 30 45 0 0 chr9 53314777 53314821 -64547806 + AT_rich Low_complexity Low_complexity 1 44 0 1711 115 127 0 chr9 53314844 53315104 -64547523 + AluSx SINE Alu 2 294 -8 1071 124 124 24 chr9 53315210 53315419 -64547208 - MER30 DNA MER1_type 0 230 1 2135 214 42 12 chr9 53315581 53316085 -64546542 - LTR40a LTR ERVL 0 519 1 277 114 214 0 chr9 53316155 53316225 -64546402 - Charlie5 DNA MER1_type 0 2621 2537 2598 58 0 3 chr9 53316225 53316533 -64546094 + AluY SINE Alu 1 307 -4 230 343 0 0 chr9 53316543 53316610 -64546017 - HAL1 LINE L1 -2434 73 7 2397 79 0 0 chr9 53317873 53318185 -64544442 - AluY SINE Alu 0 311 1 2303 109 0 3 chr9 53318187 53318491 -64544136 - AluSx SINE Alu -9 303 1 1711 221 142 56 chr9 53319622 53320366 -64542261 + L1MC4 LINE L1 6459 7138 -904 1702 80 0 5 chr9 53320366 53320578 -64542049 + AluY SINE Alu 83 293 -18 1711 221 142 56 chr9 53320578 53321009 -64541618 + L1MC4 LINE L1 7138 7892 -150 229 85 0 43 chr9 53321394 53321441 -64541186 + (TTA)n Simple_repeat Simple_repeat 2 46 0 * 267 152 0 0 chr9 53321439 53321485 -64541142 + T-rich Low_complexity Low_complexity 1 46 0 29 60 0 0 chr9 53321682 53321732 -64540895 + GC_rich Low_complexity Low_complexity 1 50 0 535 292 66 25 chr9 53322073 53322316 -64540311 + MIR SINE MIR 7 259 -3 1415 183 15 15 chr9 53322353 53322621 -64540006 + MLT1A1 LTR MaLR 1 268 -97 931 100 13 183 chr9 53322619 53322848 -64539779 + MER47B DNA MER2_type 170 359 -59 * 1895 160 0 0 chr9 53323188 53323476 -64539151 + AluSx SINE Alu 5 292 -20 510 243 133 59 chr9 53323916 53324115 -64538512 + L2 LINE L2 1436 1672 -1642 2284 105 0 3 chr9 53324115 53324409 -64538218 - AluSq SINE Alu -20 293 1 510 243 133 59 chr9 53324409 53324547 -64538080 + L2 LINE L2 1672 1798 -1516 24 67 0 0 chr9 53324718 53324763 -64537864 + AT_rich Low_complexity Low_complexity 1 45 0 224 296 45 0 chr9 53324791 53324879 -64537748 + L2 LINE L2 1818 1909 -1405 311 113 19 0 chr9 53324924 53324977 -64537650 + T-rich Low_complexity Low_complexity 5 58 0 215 129 0 0 chr9 53324979 53325010 -64537617 + (TC)n Simple_repeat Simple_repeat 1 31 0 514 162 27 0 chr9 53325011 53325122 -64537505 + CT-rich Low_complexity Low_complexity 1 114 0 2015 144 0 16 chr9 53325122 53325427 -64537200 - AluSx SINE Alu -12 300 1 1169 297 72 24 chr9 53325429 53325968 -64536659 + L2 LINE L2 2152 2716 -598 1834 200 0 0 chr9 53326192 53326502 -64536125 + AluSx SINE Alu 1 310 -2 667 161 16 9 chr9 53326537 53326682 -64535945 + L1M LINE L1 5270 5414 -764 357 263 38 70 chr9 53326715 53326928 -64535699 + HAL1b LINE L1 312 517 -831 316 316 61 17 chr9 53327355 53327586 -64535041 + L1M4 LINE L1 3541 3781 -2365 748 165 24 8 chr9 53327721 53327848 -64534779 + FLAM_A SINE Alu 1 129 -4 22 0 0 0 chr9 53328229 53328251 -64534376 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr9 53328263 53328284 -64534343 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 1708 129 57 4 chr9 53328298 53328546 -64534081 - AluSg SINE Alu -49 261 1 482 303 130 51 chr9 53328551 53328832 -64533795 + L1M4 LINE L1 4330 4587 -1559 2105 194 36 36 chr9 53328832 53329337 -64533290 - MLT1D LTR MaLR 0 505 1 482 303 130 51 chr9 53329337 53329533 -64533094 + L1M4 LINE L1 4587 4852 -1294 2378 72 7 0 chr9 53329533 53329823 -64532804 - AluY SINE Alu -19 292 1 482 303 130 51 chr9 53329823 53329852 -64532775 + L1M4 LINE L1 4852 4877 -1269 370 314 62 55 chr9 53329927 53330081 -64532546 + L1M4 LINE L1 4859 5010 -1136 1644 161 20 30 chr9 53330081 53330385 -64532242 + AluJo SINE Alu 1 301 -11 370 314 62 55 chr9 53330385 53330683 -64531944 + L1M4 LINE L1 5010 5314 -832 250 33 0 0 chr9 53331094 53331124 -64531503 + (TTTTA)n Simple_repeat Simple_repeat 2 70 0 1095 141 0 0 chr9 53331124 53331273 -64531354 - AluSg/x SINE Alu -1 310 133 685 201 44 19 chr9 53331672 53331831 -64530796 + MIR SINE MIR 100 262 0 1070 212 100 92 chr9 53333446 53333849 -64528778 - MER110A LTR ERV1 -16 452 43 1066 238 33 0 chr9 53333849 53334063 -64528564 + MER58A DNA MER1_type 4 224 0 1070 212 100 92 chr9 53334063 53334107 -64528520 - MER110A LTR ERV1 -425 43 1 2253 283 81 45 chr9 53334111 53334425 -64528202 - L2 LINE L2 0 3313 3012 1108 211 108 90 chr9 53334425 53334814 -64527813 - MSTD LTR MaLR 0 396 1 2253 283 81 45 chr9 53334814 53335636 -64526991 - L2 LINE L2 -301 3012 2125 814 242 9 72 chr9 53335636 53335859 -64526768 - MER63A DNA MER1_type -1 209 1 2253 283 81 45 chr9 53335859 53335985 -64526642 - L2 LINE L2 -1188 2125 2005 1641 229 36 30 chr9 53337406 53337587 -64525040 - MSTD LTR MaLR -1 395 216 1877 135 13 36 chr9 53337587 53337891 -64524736 + AluSx SINE Alu 1 297 -15 1641 229 36 30 chr9 53337891 53338102 -64524525 - MSTD LTR MaLR -180 216 1 6713 107 58 78 chr9 53338167 53338356 -64524271 + Tigger3b DNA MER2_type 18 209 -2819 418 143 16 0 chr9 53338356 53338419 -64524208 + AluJ/FRAM SINE Alu 231 294 -18 6713 107 58 78 chr9 53338419 53339134 -64523493 + Tigger3b DNA MER2_type 209 956 -2072 1584 170 50 14 chr9 53339134 53339416 -64523211 - AluJo SINE Alu -20 292 1 6713 107 58 78 chr9 53339416 53339687 -64522940 + Tigger3b DNA MER2_type 956 1231 0 183 323 16 32 chr9 53340653 53340715 -64521912 + MIR3 SINE MIR 15 75 -133 346 302 75 0 chr9 53340739 53340845 -64521782 - L2 LINE L2 -1 3312 3199 226 279 51 0 chr9 53342707 53342786 -64519841 + MLT1L LTR MaLR 1 83 -532 4788 166 52 35 chr9 53342802 53342876 -64519751 + MER54A LTR ERVL 1 72 -829 225 0 0 0 chr9 53342876 53342901 -64519726 + (CAGGG)n Simple_repeat Simple_repeat 2 26 0 4788 166 52 35 chr9 53342901 53343706 -64518921 + MER54A LTR ERVL 72 895 -6 1377 172 97 8 chr9 53344480 53344747 -64517880 + AluJb SINE Alu 5 295 -17 648 254 88 54 chr9 53344794 53345034 -64517593 + MER112 DNA MER1_type 12 259 -1 1996 225 65 26 chr9 53345100 53345718 -64516909 + L1ME1 LINE L1 4520 5161 -985 881 94 0 0 chr9 53345747 53345853 -64516774 + FLAM_C SINE Alu 13 118 -25 1206 214 26 12 chr9 53345871 53346253 -64516374 + L1ME1 LINE L1 5154 5538 -628 3705 160 81 18 chr9 53346256 53346688 -64515939 + MER50 LTR ERV1 1 491 -243 2252 102 0 10 chr9 53346688 53346993 -64515634 + AluSx SINE Alu 1 302 -10 3705 160 81 18 chr9 53346993 53347229 -64515398 + MER50 LTR ERV1 491 711 -23 587 180 64 180 chr9 53347230 53347406 -64515221 + L1ME1 LINE L1 5541 5673 -2112 2096 120 7 0 chr9 53347406 53347697 -64514930 + AluSp SINE Alu 2 294 -19 587 180 64 180 chr9 53347697 53347803 -64514824 + L1ME1 LINE L1 5673 5790 -1995 3101 139 27 45 chr9 53347807 53347882 -64514745 + MER34C LTR ERV1 6 81 -504 2617 127 41 0 chr9 53347882 53348269 -64514358 - MER57A LTR ERV1 0 403 1 3101 139 27 45 chr9 53348269 53348776 -64513851 + MER34C LTR ERV1 81 578 -7 2102 96 118 24 chr9 53348778 53349110 -64513517 + THE1B LTR MaLR 1 363 -1 1044 234 85 20 chr9 53349122 53349464 -64513163 + L1ME1 LINE L1 5785 6148 -18 754 284 89 23 chr9 53349485 53349788 -64512839 + MLT1L LTR MaLR 283 605 -10 1286 138 127 96 chr9 53349941 53350096 -64512531 - AluSg SINE Alu 0 300 151 1982 110 0 85 chr9 53350096 53350424 -64512203 - AluSg SINE Alu -10 300 1 1286 138 127 96 chr9 53350424 53350559 -64512068 - AluSg SINE Alu -149 151 1 210 362 118 20 chr9 53350695 53350741 -64511886 - L2 LINE L2 -4 3268 3228 3116 176 13 52 chr9 53350741 53351376 -64511251 - LTR9 LTR ERV1 0 612 3 210 362 118 20 chr9 53351376 53351481 -64511146 - L2 LINE L2 -44 3228 3102 2029 126 36 0 chr9 53351798 53352076 -64510551 + AluSx SINE Alu 2 289 -23 805 208 21 0 chr9 53352168 53352312 -64510315 + MER20 DNA MER1_type 3 149 -70 832 202 216 20 chr9 53352945 53353237 -64509390 + L1MC4 LINE L1 6879 7227 -815 2434 83 3 0 chr9 53353287 53353588 -64509039 - AluSp SINE Alu -11 302 1 1689 166 3 13 chr9 53353617 53353919 -64508708 + AluJo SINE Alu 1 299 -13 225 195 69 46 chr9 53353953 53354040 -64508587 - L1MC4 LINE L1 -1340 6702 6614 305 257 174 0 chr9 53354105 53354214 -64508413 + L1MC4 LINE L1 7321 7448 -594 592 295 50 43 chr9 53354231 53354489 -64508138 + MER21B LTR ERV1 6 265 -598 388 220 11 33 chr9 53354489 53354580 -64508047 + MER21A LTR ERV1 709 797 -134 447 249 110 55 chr9 53354602 53355135 -64507492 + L1MC4a LINE L1 7382 8033 -9 2053 131 23 0 chr9 53355135 53355440 -64507187 + AluSx SINE Alu 1 312 0 447 249 110 55 chr9 53355440 53355451 -64507176 + L1MC4a LINE L1 8033 8042 0 411 156 52 73 chr9 53355519 53355583 -64507044 + L1MB3 LINE L1 6083 6146 -37 1604 194 20 7 chr9 53355583 53355877 -64506750 - AluJb SINE Alu -10 302 5 411 156 52 73 chr9 53355877 53355908 -64506719 + L1MB3 LINE L1 6146 6176 -7 280 254 12 24 chr9 53356667 53356752 -64505875 + CT-rich Low_complexity Low_complexity 2 157 -10 417 120 93 0 chr9 53356752 53356827 -64505800 - L1MB4 LINE L1 -1 6179 6098 280 254 12 24 chr9 53356827 53356838 -64505789 + CT-rich Low_complexity Low_complexity 157 167 0 2312 98 0 0 chr9 53356850 53357145 -64505482 - AluSg SINE Alu -15 295 1 180 0 0 0 chr9 53357476 53357496 -64505131 + (CA)n Simple_repeat Simple_repeat 1 20 0 203 156 0 0 chr9 53357519 53357551 -64505076 + (CATATA)n Simple_repeat Simple_repeat 5 36 0 211 329 0 13 chr9 53357821 53357900 -64504727 + MIR SINE MIR 6 83 -179 278 27 108 0 chr9 53358051 53358088 -64504539 - MLT2C1 LTR ERVL -7 390 350 357 24 0 0 chr9 53358113 53358155 -64504472 + (TG)n Simple_repeat Simple_repeat 1 42 0 928 154 103 23 chr9 53358172 53358347 -64504280 - MER2 DNA MER2_type 0 345 157 1623 121 40 27 chr9 53358363 53358685 -64503942 - MER4A LTR ERV1 -19 645 261 618 85 53 11 chr9 53358685 53358779 -64503848 - MER4A LTR ERV1 -566 98 1 1043 176 0 0 chr9 53358779 53358944 -64503683 - MER2 DNA MER2_type -180 165 1 450 0 0 0 chr9 53358959 53359009 -64503618 + (TATATG)n Simple_repeat Simple_repeat 3 52 0 2142 178 20 14 chr9 53359010 53359392 -64503235 - MLT2D LTR ERVL -40 475 1 1295 251 100 46 chr9 53359401 53360078 -64502549 - HAL1b LINE L1 -31 1317 604 389 234 32 11 chr9 53360129 53360223 -64502404 - MER81 DNA DNA 0 114 19 2115 139 3 0 chr9 53360530 53360832 -64501795 + AluSx SINE Alu 1 303 -9 665 152 19 0 chr9 53361160 53361265 -64501362 - FLAM_C SINE Alu -8 135 29 1757 150 24 17 chr9 53361266 53361553 -64501074 - AluJb SINE Alu -23 289 1 1060 177 33 0 chr9 53361556 53361737 -64500890 - AluJb SINE Alu -11 301 115 531 207 0 0 chr9 53361739 53361826 -64500801 + AluJ/FLAM SINE Alu 2 88 -224 * 829 126 9 0 chr9 53361818 53361929 -64500698 - AluJb SINE Alu -196 116 5 940 213 84 42 chr9 53362656 53362919 -64499708 - ORSL DNA AcHobo -1 274 1 1056 152 0 6 chr9 53363130 53363301 -64499326 - AluSg/x SINE Alu -15 295 126 2105 110 6 35 chr9 53363301 53363620 -64499007 - AluSx SINE Alu -2 310 1 846 158 0 23 chr9 53364176 53364309 -64498318 - FLAM_C SINE Alu -2 131 2 730 215 47 54 chr9 53364543 53364822 -64497805 + pTR5 LTR ERV1 742 1018 -1420 3504 120 58 150 chr9 53364899 53365769 -64496858 + pTR5 LTR ERV1 270 2468 0 1325 182 76 22 chr9 53365868 53366143 -64496484 + AluJo SINE Alu 1 290 -22 242 264 28 0 chr9 53366407 53366479 -64496148 + MER20B DNA MER1_type 103 176 -607 2057 133 3 3 chr9 53366552 53366852 -64495775 - AluSx SINE Alu -12 300 1 961 93 0 0 chr9 53367901 53368019 -64494608 + AluSq/x SINE Alu 1 118 -194 2068 164 44 33 chr9 53368468 53369011 -64493616 + MLT2A2 LTR ERVL 1 554 0 4171 113 120 94 chr9 53369335 53370673 -64491954 + pTR5 LTR ERV1 741 2438 0 285 212 152 46 chr9 53370676 53370827 -64491800 - L1ME4a LINE L1 -121 6000 5834 744 216 10 91 chr9 53370836 53370889 -64491738 - MER5A DNA MER1_type 0 189 133 1985 164 0 0 chr9 53370889 53371193 -64491434 + AluSx SINE Alu 1 304 -8 744 216 10 91 chr9 53371193 53371290 -64491337 - MER5A DNA MER1_type -56 133 56 1854 174 0 16 chr9 53371290 53371607 -64491020 - AluJo SINE Alu 0 312 1 744 216 10 91 chr9 53371607 53371654 -64490973 - MER5A DNA MER1_type -133 56 7 640 195 0 16 chr9 53371869 53371992 -64490635 - MER82 DNA MER2_type -293 360 240 718 241 0 0 chr9 53372474 53372611 -64490016 - MER82 DNA MER2_type -509 144 8 835 156 0 16 chr9 53372624 53372752 -64489875 + FLAM_C SINE Alu 2 127 -16 233 315 14 0 chr9 53372826 53372899 -64489728 + MER5A DNA MER1_type 115 188 -1 2442 82 0 0 chr9 53372969 53373263 -64489364 - AluSg SINE Alu -16 294 1 223 398 29 0 chr9 53373458 53373561 -64489066 + L2 LINE L2 3141 3246 -26 1194 130 22 87 chr9 53373612 53373842 -64488785 + MER20 DNA MER1_type 1 215 -4 365 98 0 0 chr9 53374685 53374736 -64487891 - MADE1 DNA Mariner 0 80 30 1830 117 88 0 chr9 53374737 53375010 -64487617 + AluSx SINE Alu 1 297 -15 590 93 0 82 chr9 53375068 53375165 -64487462 + L1MC1 LINE L1 6245 6333 0 2269 108 7 0 chr9 53375312 53375617 -64487010 + AluSx SINE Alu 1 307 -5 253 340 66 0 chr9 53375617 53375723 -64486904 - L2 LINE L2 -229 3043 2931 611 258 12 18 chr9 53376296 53376463 -64486164 + MIR SINE MIR 81 246 -16 1171 227 110 13 chr9 53376578 53376972 -64485655 + MER110A LTR ERV1 67 477 -5 246 350 0 12 chr9 53377616 53377696 -64484931 - MER81 DNA DNA -32 82 4 6008 184 33 19 chr9 53377772 53377787 -64484840 + L1MA9 LINE L1 3009 3022 -3124 1926 175 3 0 chr9 53377787 53378096 -64484531 + AluJo SINE Alu 1 310 -2 6008 184 33 19 chr9 53378096 53379360 -64483267 + L1MA9 LINE L1 3022 4305 -1841 4537 154 22 34 chr9 53379358 53379820 -64482807 + L1MA9 LINE L1 4540 5006 -1306 * 2220 113 10 0 chr9 53379820 53380120 -64482507 + AluSx SINE Alu 1 303 -9 4537 154 22 34 chr9 53380120 53380521 -64482106 + L1MA9 LINE L1 5006 5410 -902 860 199 12 41 chr9 53380521 53380692 -64481935 + FRAM SINE Alu 1 166 0 4537 154 22 34 chr9 53380692 53381435 -64481192 + L1MA9 LINE L1 5410 6127 -185 1851 85 0 8 chr9 53381639 53381875 -64480752 - AluSc SINE Alu -75 234 1 1801 158 0 24 chr9 53381904 53382196 -64480431 + AluJb SINE Alu 1 285 -27 375 245 56 49 chr9 53382315 53382458 -64480169 + MIR SINE MIR 116 259 -3 2878 7 0 0 chr9 53383676 53383984 -64478643 + AluYb8 SINE Alu 1 308 -10 360 137 15 13 chr9 53383999 53384077 -64478550 + L1MB8 LINE L1 5993 6070 -108 939 120 0 15 chr9 53384077 53384210 -64478417 + FLAM_C SINE Alu 1 131 -12 347 133 216 10 chr9 53384216 53384317 -64478310 + L1MB8 LINE L1 6058 6182 -2 23 0 0 0 chr9 53384423 53384446 -64478181 + AT_rich Low_complexity Low_complexity 1 23 0 2423 93 3 0 chr9 53384903 53385215 -64477412 + AluSp SINE Alu 1 313 0 2070 151 36 20 chr9 53386305 53386663 -64475964 + MER47A DNA MER2_type 3 366 0 1374 140 183 23 chr9 53387036 53387293 -64475334 - AluSg SINE Alu -2 298 1 21 71 0 0 chr9 53387372 53387414 -64475213 + AT_rich Low_complexity Low_complexity 1 42 0 23 33 0 0 chr9 53387830 53387860 -64474767 + AT_rich Low_complexity Low_complexity 1 30 0 320 250 115 0 chr9 53387893 53387997 -64474630 + L1MC4 LINE L1 7927 8042 0 189 94 0 0 chr9 53391372 53391404 -64471223 + (TA)n Simple_repeat Simple_repeat 1 32 0 270 0 0 0 chr9 53391405 53391435 -64471192 + (GA)n Simple_repeat Simple_repeat 2 31 0 1714 161 106 53 chr9 53393214 53393666 -64468961 + L1M4 LINE L1 816 1291 -5251 241 33 0 0 chr9 53393660 53393690 -64468937 + L1MC2 LINE L1 6103 6132 -212 * 1277 265 99 19 chr9 53393718 53393754 -64468873 + L1M4 LINE L1 1557 1589 -5057 928 121 115 0 chr9 53393754 53393919 -64468708 + L1MC2 LINE L1 6151 6334 -10 1277 265 99 19 chr9 53393919 53394160 -64468467 + L1M4 LINE L1 1589 1809 -4837 2186 128 0 0 chr9 53394160 53394450 -64468177 + AluSx SINE Alu 1 290 -22 1277 265 99 19 chr9 53394450 53394737 -64467890 + L1M4 LINE L1 1809 2167 -4479 2259 112 0 0 chr9 53394793 53395097 -64467530 - AluSq SINE Alu -9 304 1 2760 171 95 19 chr9 53395121 53395742 -64466885 + L1MB7 LINE L1 5510 6177 -7 412 295 147 58 chr9 53397061 53397627 -64465000 + HAL1 LINE L1 112 727 -1780 387 290 46 0 chr9 53397745 53397876 -64464751 + MLT1G LTR MaLR 1 137 -458 1248 80 296 0 chr9 53397878 53398077 -64464550 + LTR12 LTR ERV1 1 258 -456 338 248 34 17 chr9 53398077 53398194 -64464433 + LTR30 LTR ERV1 524 642 -80 1612 102 44 0 chr9 53398195 53398420 -64464207 + LTR12 LTR ERV1 480 714 0 20740 99 50 9 chr9 53398440 53401401 -64461226 + HERV9 LTR ERV1 58 3139 -5260 6644 93 0 10 chr9 53401408 53402312 -64460315 + HERV9 LTR ERV1 4080 4974 -3425 1919 103 96 64 chr9 53402281 53402700 -64459927 + Harlequin LTR ERV1 842 1273 -5623 * 653 61 61 40 chr9 53402681 53402780 -64459847 + Harlequin LTR ERV1 1443 1543 -5353 * 902 175 81 0 chr9 53402777 53402937 -64459690 + Harlequin LTR ERV1 4233 4405 -3380 * 1143 99 0 0 chr9 53402910 53403071 -64459556 + Harlequin LTR ERV1 1580 1740 -5156 * 5526 106 14 13 chr9 53403050 53403845 -64458782 + Harlequin LTR ERV1 7604 8399 0 265 231 0 0 chr9 53403845 53403897 -64458730 + LTR30 LTR ERV1 1 52 -670 1380 90 124 5 chr9 53403897 53404098 -64458529 + LTR12 LTR ERV1 53 277 -437 318 242 10 10 chr9 53404098 53404197 -64458430 + LTR30 LTR ERV1 544 642 -80 744 126 0 0 chr9 53404197 53404300 -64458327 + LTR12 LTR ERV1 612 714 0 986 242 67 20 chr9 53404300 53404704 -64457923 + MLT1G LTR MaLR 95 590 0 1049 222 36 89 chr9 53404704 53404804 -64457823 + HAL1 LINE L1 1019 1123 -1384 1940 153 3 0 chr9 53404804 53405099 -64457528 + AluSx SINE Alu 1 296 -16 1049 222 36 89 chr9 53405099 53405502 -64457125 + HAL1 LINE L1 1123 1495 -1012 1812 156 3 3 chr9 53405557 53405839 -64456788 + AluJo SINE Alu 4 285 -27 314 305 126 0 chr9 53405856 53406030 -64456597 + HAL1 LINE L1 1730 1925 -582 851 135 0 8 chr9 53406672 53406798 -64455829 - AluSq/x SINE Alu -187 125 1 522 249 76 11 chr9 53406899 53407084 -64455543 + HAL1 LINE L1 66 262 -2245 674 229 104 11 chr9 53407091 53407274 -64455353 + HAL1 LINE L1 1520 1719 -788 775 292 62 0 chr9 53407323 53407532 -64455095 - MIR SINE MIR -20 242 21 2105 119 7 10 chr9 53407560 53407855 -64454772 + AluSx SINE Alu 1 294 -18 414 260 69 125 chr9 53407855 53408146 -64454481 + HAL1 LINE L1 1742 2048 -459 1853 130 0 4 chr9 53408146 53408415 -64454212 + AluSx SINE Alu 29 296 -16 414 260 69 125 chr9 53408415 53408505 -64454122 + HAL1 LINE L1 2048 2095 -412 2284 107 0 0 chr9 53408505 53408805 -64453822 + AluSg SINE Alu 1 300 -10 414 260 69 125 chr9 53408805 53408887 -64453740 + HAL1 LINE L1 2095 2180 -327 1464 193 123 17 chr9 53408892 53409190 -64453437 + Charlie1b DNA MER1_type 54 410 -2351 1383 175 76 46 chr9 53409190 53409493 -64453134 - AluJo SINE Alu 0 312 1 1464 193 123 17 chr9 53409493 53409609 -64453018 + Charlie1b DNA MER1_type 410 512 -11 659 183 0 87 chr9 53409613 53409739 -64452888 + FLAM_A SINE Alu 1 115 -18 298 188 102 114 chr9 53409789 53409869 -64452758 + HAL1 LINE L1 2189 2268 -239 1861 163 0 38 chr9 53409869 53410188 -64452439 + AluJo SINE Alu 1 307 -5 298 188 102 114 chr9 53410188 53410283 -64452344 + HAL1 LINE L1 2268 2362 -145 923 218 88 9 chr9 53410295 53410567 -64452060 + Charlie5 DNA MER1_type 1 270 -2342 238 200 75 0 chr9 53410557 53410637 -64451990 + Charlie5 DNA MER1_type 2439 2524 -88 * 1770 147 3 27 chr9 53410640 53410932 -64451695 + AluJo SINE Alu 1 285 -27 744 62 0 0 chr9 53411064 53411161 -64451466 + AluY SINE Alu 215 311 0 2268 85 0 7 chr9 53411353 53411646 -64450981 - AluSq SINE Alu -21 292 2 232 151 113 0 chr9 53412153 53412206 -64450421 - HAL1 LINE L1 -1629 878 820 1174 136 5 0 chr9 53412239 53412423 -64450204 + L1MB1 LINE L1 5290 5474 -694 232 238 48 14 chr9 53412423 53412570 -64450057 + (TA)n Simple_repeat Simple_repeat 2 153 0 3460 187 8 2 chr9 53412570 53413186 -64449441 + L1MB1 LINE L1 5480 6099 -90 2298 169 12 22 chr9 53413191 53413598 -64449029 + MER57A LTR ERV1 1 403 0 362 153 56 0 chr9 53413603 53413675 -64448952 + L1MA10 LINE L1 6249 6324 -10 300 57 0 0 chr9 53413705 53413740 -64448887 + U2 snRNA snRNA 1 35 -153 1851 138 52 0 chr9 53413771 53414081 -64448546 + AluSx SINE Alu 1 324 0 2232 92 0 0 chr9 53414081 53414410 -64448217 + AluY SINE Alu 1 329 0 341 298 21 0 chr9 53414417 53414511 -64448116 - HAL1 LINE L1 -1711 796 701 597 275 135 18 chr9 53414512 53414741 -64447886 - LTR16C LTR ERVL 0 491 236 1253 234 87 44 chr9 53414918 53415146 -64447481 - HAL1 LINE L1 -1800 707 490 1196 214 12 64 chr9 53415146 53415325 -64447302 - MER33 DNA MER1_type -2261 324 170 1756 179 0 7 chr9 53415325 53415615 -64447012 - AluJb SINE Alu -24 288 1 1196 214 12 64 chr9 53415615 53415777 -64446850 - MER33 DNA MER1_type -2415 170 1 1253 234 87 44 chr9 53415777 53415872 -64446755 - HAL1 LINE L1 -2017 490 400 1931 59 118 18 chr9 53415872 53416144 -64446483 - AluY SINE Alu -12 299 1 1253 234 87 44 chr9 53416144 53416293 -64446334 - HAL1 LINE L1 -2107 400 214 1747 140 17 3 chr9 53416456 53416748 -64445879 + MER41B LTR ERV1 339 634 -1 8100 163 84 32 chr9 53416749 53417623 -64445004 + L1MCa LINE L1 708 1535 -4891 5691 188 9 1 chr9 53417623 53418517 -64444110 + MER54A LTR ERVL 1 901 0 8100 163 84 32 chr9 53418517 53419109 -64443518 + L1MCa LINE L1 1535 2095 -4331 2279 115 7 0 chr9 53419109 53419413 -64443214 + AluSx SINE Alu 1 306 -6 8100 163 84 32 chr9 53419413 53419482 -64443145 + L1MCa LINE L1 2095 2159 -4267 2005 146 0 34 chr9 53419482 53419805 -64442822 + AluJo SINE Alu 1 312 0 8100 163 84 32 chr9 53419805 53420478 -64442149 + L1MCa LINE L1 2159 3038 -3388 803 145 0 59 chr9 53420489 53420641 -64441986 - FLAM_C SINE Alu 0 143 1 27 0 0 0 chr9 53420646 53420673 -64441954 + AT_rich Low_complexity Low_complexity 1 27 0 2035 136 3 0 chr9 53420674 53420961 -64441666 - AluSq SINE Alu -25 288 1 2304 217 37 62 chr9 53420962 53421365 -64441262 + L1MCa LINE L1 3035 3410 -3016 1936 140 0 0 chr9 53421365 53421644 -64440983 + AluSx SINE Alu 1 279 -33 2304 217 37 62 chr9 53421644 53422045 -64440582 + L1MCa LINE L1 3410 3819 -2607 2209 59 0 11 chr9 53422309 53422580 -64440047 - AluY SINE Alu 0 311 44 1788 150 18 0 chr9 53422597 53422883 -64439744 - AluSx SINE Alu -1 311 21 402 262 128 5 chr9 53422934 53423121 -64439506 - L1ME LINE L1 -385 5736 5527 1763 153 60 0 chr9 53423128 53423409 -64439218 + AluJb SINE Alu 1 298 -14 1370 177 118 0 chr9 53423409 53423663 -64438964 - MLT1B LTR MaLR -106 284 1 2145 108 3 46 chr9 53423670 53423993 -64438634 - AluSq SINE Alu -4 309 1 1776 167 0 0 chr9 53424020 53424295 -64438332 - AluJb SINE Alu -10 302 28 4596 120 7 65 chr9 53424296 53425029 -64437598 + LTR8 LTR ERV1 2 691 0 2314 96 0 0 chr9 53425085 53425378 -64437249 + AluSq SINE Alu 1 293 -20 2390 93 3 0 chr9 53425447 53425749 -64436878 - AluY SINE Alu -8 303 1 1016 215 101 8 chr9 53426115 53426352 -64436275 + LTR41 LTR ERVL 1 259 -514 1794 181 117 14 chr9 53427046 53427405 -64435222 - MSTD LTR MaLR 0 396 1 2057 174 5 47 chr9 53427491 53427754 -64434873 - MER47A DNA MER2_type -1958 365 121 1978 149 0 34 chr9 53427754 53428076 -64434551 + AluJb SINE Alu 1 311 -1 2057 174 5 47 chr9 53428076 53428192 -64434435 - MER47A DNA MER2_type -2202 121 2 1946 146 3 19 chr9 53428239 53428341 -64434286 + AluJb SINE Alu 2 104 -208 2325 119 46 32 chr9 53428341 53428711 -64433916 + THE1C LTR MaLR 1 375 0 1946 146 3 19 chr9 53428711 53428917 -64433710 + AluJb SINE Alu 104 305 -7 1946 141 10 13 chr9 53428984 53429289 -64433338 - AluSx SINE Alu -8 304 1 539 130 13 0 chr9 53429823 53429900 -64432727 - AluJ/FLAM SINE Alu -233 79 2 1654 174 7 7 chr9 53429978 53430266 -64432361 + AluJo SINE Alu 1 288 -24 1617 170 44 3 chr9 53430871 53431165 -64431462 - AluJo SINE Alu -6 306 1 421 266 75 48 chr9 53431186 53431374 -64431253 - L2 LINE L2 -1 3312 3120 2648 168 77 21 chr9 53431445 53432010 -64430617 + LTR48B LTR ERV1 1 597 -47 3629 121 3 50 chr9 53432010 53432612 -64430015 + MER4B LTR ERV1 1 574 -36 236 186 70 58 chr9 53433111 53433197 -64429430 + MER34 LTR ERV1 450 536 -6 2147 116 10 3 chr9 53433484 53433776 -64428851 - AluSx SINE Alu -18 294 1 2046 175 161 60 chr9 53433883 53434596 -64428031 - LTR1B LTR ERV1 0 785 1 405 183 106 99 chr9 53434968 53435110 -64427517 - MER34 LTR ERV1 -5 537 450 478 149 0 170 chr9 53435111 53435196 -64427431 + L1MCa LINE L1 733 786 -5778 1738 197 7 0 chr9 53435196 53435490 -64427137 + AluJb SINE Alu 1 296 -16 478 149 0 170 chr9 53435490 53435545 -64427082 + L1MCa LINE L1 786 849 -5715 756 190 10 62 chr9 53435545 53435740 -64426887 + MER41B LTR ERV1 1 185 -450 2083 132 0 29 chr9 53435960 53436270 -64426357 + AluSx SINE Alu 1 301 -11 1074 188 48 4 chr9 53436276 53436505 -64426122 + L1MCa LINE L1 740 978 -5067 198 103 0 0 chr9 53436801 53436830 -64425797 + (TAGA)n Simple_repeat Simple_repeat 2 30 0 2164 70 48 0 chr9 53437042 53437347 -64425280 + AluSp SINE Alu 1 318 0 436 232 112 67 chr9 53437569 53437741 -64424886 + MIR3 SINE MIR 2 187 -21 1895 132 38 7 chr9 53438324 53438647 -64423980 - AluSx SINE Alu 0 312 1 186 349 16 16 chr9 53439295 53439358 -64423269 - MIR SINE MIR -178 84 22 1469 117 4 29 chr9 53439389 53439688 -64422939 + L1M2 LINE L1 5203 5495 -743 2048 122 0 3 chr9 53439729 53440044 -64422583 + AluSg SINE Alu 1 310 0 255 191 0 0 chr9 53440058 53440100 -64422527 + MER5A DNA MER1_type 12 53 -136 3982 194 85 32 chr9 53440101 53440267 -64422360 - MER45B DNA AcHobo -541 1040 884 1958 154 0 0 chr9 53440267 53440565 -64422062 - AluSq SINE Alu -15 298 1 3982 194 85 32 chr9 53440565 53441330 -64421297 - MER45B DNA AcHobo -697 884 60 201 233 0 23 chr9 53441355 53441398 -64421229 + MER5A DNA MER1_type 41 82 -107 1013 150 17 6 chr9 53441528 53441701 -64420926 + AluJb SINE Alu 131 305 -7 935 170 28 44 chr9 53441723 53441905 -64420722 + MSTD LTR MaLR 218 396 0 21 0 0 0 chr9 53442426 53442447 -64420180 + AT_rich Low_complexity Low_complexity 1 21 0 1899 188 97 46 chr9 53442457 53442990 -64419637 + MLT1F1 LTR MaLR 10 567 0 1699 162 48 0 chr9 53443473 53443744 -64418883 + AluJb SINE Alu 1 284 -28 21 0 0 0 chr9 53443744 53443765 -64418862 + AT_rich Low_complexity Low_complexity 1 21 0 947 121 0 0 chr9 53444565 53444689 -64417938 - FLAM_C SINE Alu -7 126 3 2288 223 95 22 chr9 53444745 53445374 -64417253 + L1MCa LINE L1 19 693 -5733 818 241 9 75 chr9 53445475 53445703 -64416924 - AluJo SINE Alu -98 214 2 666 229 21 0 chr9 53445715 53445859 -64416768 - MLT1A1 LTR MaLR -218 147 1 206 319 85 0 chr9 53445949 53446043 -64416584 - MIR SINE MIR -57 205 104 501 296 122 55 chr9 53446126 53446560 -64416067 - MLT1K LTR MaLR -39 576 85 550 224 127 22 chr9 53446602 53446830 -64415797 + LTR37B LTR ERV1 194 445 -23 1013 176 6 6 chr9 53446830 53447006 -64415621 - AluJb SINE Alu -18 294 119 792 189 212 52 chr9 53447095 53447307 -64415320 + MLT1G1 LTR MaLR 297 595 0 2003 139 0 14 chr9 53447390 53447684 -64414943 - AluJb SINE Alu -22 290 1 719 303 64 14 chr9 53448312 53448593 -64414034 + MLT1K LTR MaLR 3 297 -291 1565 243 96 59 chr9 53448884 53448998 -64413629 + MLT1E LTR MaLR 1 109 -484 1989 157 0 10 chr9 53448998 53449310 -64413317 - AluJb SINE Alu 0 312 4 1565 243 96 59 chr9 53449310 53449732 -64412895 + MLT1E LTR MaLR 109 556 -37 2529 184 30 30 chr9 53449739 53450344 -64412283 - MER82 DNA MER2_type 0 653 1 33 43 0 0 chr9 53451592 53451639 -64410988 + AT_rich Low_complexity Low_complexity 1 47 0 1186 166 123 16 chr9 53453844 53454097 -64408530 - MER58B DNA MER1_type 0 341 62 348 322 155 0 chr9 53456114 53456288 -64406339 + MIR SINE MIR 62 262 0 2249 99 3 3 chr9 53456340 53456642 -64405985 - AluSc SINE Alu -7 302 1 354 23 0 0 chr9 53457532 53457575 -64405052 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 27 29 0 0 chr9 53458684 53458718 -64403909 + AT_rich Low_complexity Low_complexity 1 34 0 273 143 24 0 chr9 53458718 53458760 -64403867 - MER66A LTR ERV1 -146 332 290 607 251 101 32 chr9 53459210 53459429 -64403198 + MIR SINE MIR 18 251 -11 2168 120 0 3 chr9 53460715 53461015 -64401612 - AluJb SINE Alu -13 299 1 1022 173 5 69 chr9 53462188 53462259 -64400368 + MER5A DNA MER1_type 1 75 -114 1805 143 10 30 chr9 53462259 53462560 -64400067 - AluJo SINE Alu -17 295 1 1022 173 5 69 chr9 53462560 53462690 -64399937 + MER5A DNA MER1_type 75 189 0 274 200 0 0 chr9 53462724 53462774 -64399853 - L2 LINE L2 0 3272 3223 2316 69 0 0 chr9 53463873 53464149 -64398478 - AluSc SINE Alu -15 294 19 1353 188 24 26 chr9 53464164 53464504 -64398123 + LTR37B LTR ERV1 90 468 0 181 256 53 90 chr9 53464954 53465087 -64397540 + L2 LINE L2 2392 2519 -795 1871 179 39 12 chr9 53465746 53466082 -64396545 + MER7A DNA MER2_type 1 343 -3 3385 202 25 26 chr9 53466162 53466816 -64395811 - MER82 DNA MER2_type 0 653 1 184 262 19 112 chr9 53467146 53467253 -64395374 + L2 LINE L2 240 336 -2978 279 346 31 12 chr9 53467286 53467448 -64395179 - MIR SINE MIR 0 262 98 1779 168 0 35 chr9 53467670 53467986 -64394641 - AluJb SINE Alu -7 305 1 285 335 160 39 chr9 53468293 53468499 -64394128 + MIR SINE MIR 20 250 -12 28 0 0 0 chr9 53468532 53468560 -64394067 + AT_rich Low_complexity Low_complexity 1 28 0 1821 165 17 0 chr9 53469426 53469717 -64392910 - AluJb SINE Alu -16 296 1 185 238 0 0 chr9 53469987 53470029 -64392598 - MIR SINE MIR -8 254 213 2128 140 87 0 chr9 53470071 53470428 -64392199 - L1MA8 LINE L1 -3 6288 5901 845 294 28 0 chr9 53470428 53470646 -64391981 - MIR SINE MIR -35 227 4 214 100 0 100 chr9 53470800 53470850 -64391777 + (T)n Simple_repeat Simple_repeat 1 45 0 2439 73 0 7 chr9 53471099 53471400 -64391227 - AluY SINE Alu -12 299 1 281 327 48 84 chr9 53471855 53472106 -64390521 + L2 LINE L2 2880 3121 -151 3682 106 56 0 chr9 53472261 53472801 -64389826 - L1PA15 LINE L1 -21 6144 5575 1338 223 0 11 chr9 53473142 53473415 -64389212 - AluJo SINE Alu -22 290 21 933 239 25 86 chr9 53473425 53473514 -64389113 + MER58B DNA MER1_type 47 140 -2280 2179 122 0 0 chr9 53473514 53473809 -64388818 + AluSx SINE Alu 1 295 -17 933 239 25 86 chr9 53473809 53473873 -64388754 + MER58B DNA MER1_type 140 206 -2214 1744 162 10 10 chr9 53473873 53474170 -64388457 + AluSx SINE Alu 1 297 -15 933 239 25 86 chr9 53474170 53474329 -64388298 + MER58B DNA MER1_type 206 341 0 344 226 29 117 chr9 53474329 53474408 -64388219 + MIR SINE MIR 89 153 -109 1832 157 20 7 chr9 53474408 53474708 -64387919 + AluJo SINE Alu 1 304 -8 344 226 29 117 chr9 53474708 53474765 -64387862 + MIR SINE MIR 153 213 -49 790 257 56 58 chr9 53474947 53475340 -64387287 + MER57B LTR ERV1 43 434 0 2112 107 10 7 chr9 53475548 53475846 -64386781 - AluSx SINE Alu -13 299 1 1830 114 3 65 chr9 53477235 53477525 -64385102 + AluSx SINE Alu 6 277 -35 333 0 0 0 chr9 53477548 53477585 -64385042 + (TG)n Simple_repeat Simple_repeat 2 38 0 267 265 48 0 chr9 53477855 53477938 -64384689 + MIR SINE MIR 90 176 -86 2113 135 3 0 chr9 53479784 53480087 -64382540 + AluSx SINE Alu 1 304 -8 24 32 0 0 chr9 53482016 53482047 -64380580 + AT_rich Low_complexity Low_complexity 1 31 0 240 111 0 0 chr9 53482577 53482613 -64380014 + (A)n Simple_repeat Simple_repeat 1 36 0 428 232 20 0 chr9 53482819 53482918 -64379709 - MIR SINE MIR -112 150 50 21 36 0 0 chr9 53483893 53483921 -64378706 + AT_rich Low_complexity Low_complexity 1 28 0 1814 137 50 4 chr9 53487486 53487763 -64374864 + AluJb SINE Alu 5 294 -18 4958 162 65 8 chr9 53487806 53488258 -64374369 + L1MC1 LINE L1 4835 5260 -1073 1994 126 7 10 chr9 53488258 53488578 -64374049 + AluSc SINE Alu 1 309 0 4958 162 65 8 chr9 53488578 53489350 -64373277 + L1MC1 LINE L1 5260 6112 -221 1121 172 25 10 chr9 53489517 53489721 -64372906 + L1MC1 LINE L1 6121 6327 -6 1204 195 0 5 chr9 53489954 53490164 -64372463 + AluJb SINE Alu 77 285 -27 464 0 18 0 chr9 53490166 53490222 -64372405 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 253 202 29 52 chr9 53490752 53490925 -64371702 + (TAAA)n Simple_repeat Simple_repeat 2 170 0 405 108 0 0 chr9 53491737 53491802 -64370825 + L1PB1 LINE L1 6086 6150 -1 754 247 49 62 chr9 53492373 53492681 -64369946 - L2 LINE L2 -62 3251 2948 191 196 43 22 chr9 53492806 53492852 -64369775 + L2 LINE L2 3247 3293 -20 1387 155 13 0 chr9 53493301 53493527 -64369100 + MER46A DNA MER2_type 7 235 -1 1872 154 68 9 chr9 53493841 53494165 -64368462 + MER2 DNA MER2_type 1 343 -1 383 263 0 0 chr9 53494542 53494622 -64368005 + MER21B LTR ERV1 1 80 -783 * 577 144 144 88 chr9 53494612 53494772 -64367855 + MER21B LTR ERV1 683 851 -12 641 175 38 24 chr9 53495042 53495211 -64367416 + MER3 DNA MER1_type 1 205 -4 230 289 22 0 chr9 53495217 53495307 -64367320 + MER103 DNA DNA 74 165 -1 23 0 0 0 chr9 53496385 53496408 -64366219 + AT_rich Low_complexity Low_complexity 1 23 0 263 180 144 45 chr9 53496500 53496611 -64366016 + MIR SINE MIR 112 233 -29 330 103 309 0 chr9 53497183 53497251 -64365376 - L2 LINE L2 -1 3312 3224 208 184 158 0 chr9 53497794 53497832 -64364795 + MIR SINE MIR 36 79 -183 2187 99 3 0 chr9 53498651 53498934 -64363693 + AluSp SINE Alu 1 284 -29 1177 252 87 11 chr9 53499437 53499806 -64362821 + MLT1I LTR MaLR 13 409 0 332 223 116 8 chr9 53500017 53500138 -64362489 + MER113 DNA MER1_type? 23 156 -365 1369 164 44 4 chr9 53500143 53500368 -64362259 - MER46A DNA MER2_type 0 236 3 203 96 58 19 chr9 53500424 53500476 -64362151 + A-rich Low_complexity Low_complexity 5 58 0 2372 101 0 0 chr9 53501076 53501384 -64361243 + AluSg SINE Alu 1 308 -2 21 0 0 0 chr9 53501608 53501629 -64360998 + AT_rich Low_complexity Low_complexity 1 21 0 270 220 85 0 chr9 53501630 53501689 -64360938 + MLT1J2 LTR MaLR 375 438 -12 2047 114 0 0 chr9 53501855 53502119 -64360508 - AluSq SINE Alu -49 264 1 358 343 57 14 chr9 53502129 53502426 -64360201 + L1 LINE L1 2336 2645 -3501 306 258 53 38 chr9 53502639 53502771 -64359856 + L1 LINE L1 2957 3090 -3056 207 200 0 0 chr9 53503492 53503532 -64359095 + A-rich Low_complexity Low_complexity 2 41 0 2681 193 93 19 chr9 53504603 53505093 -64357534 + MLT1F1 LTR MaLR 1 534 -33 1927 148 27 0 chr9 53505093 53505390 -64357237 - AluJb SINE Alu -7 305 1 2681 193 93 19 chr9 53505390 53505427 -64357200 + MLT1F1 LTR MaLR 534 567 0 190 304 18 0 chr9 53506171 53506227 -64356400 + L2 LINE L2 3248 3304 -9 683 94 0 0 chr9 53506330 53506415 -64356212 + AluSp SINE Alu 2 86 -227 8757 56 2 2 chr9 53506415 53507422 -64355205 + LTR13 LTR ERVK 1 1007 0 1580 116 5 0 chr9 53507422 53507638 -64354989 + AluSp SINE Alu 81 297 -16 995 229 4 43 chr9 53508332 53508563 -64354064 - MER58A DNA MER1_type -2 222 1 279 252 175 14 chr9 53508676 53508819 -64353808 + L1ME LINE L1 5541 5706 -415 1844 153 129 6 chr9 53509387 53509728 -64352899 - MLT1B LTR MaLR -7 383 1 2296 121 0 0 chr9 53509884 53510197 -64352430 - AluSq SINE Alu 0 313 1 43739 33 21 3 chr9 53510616 53516653 -64345974 + L1PA2 LINE L1 2 6152 -3 24 0 0 0 chr9 53516678 53516702 -64345925 + AT_rich Low_complexity Low_complexity 1 24 0 534 199 114 54 chr9 53517135 53517301 -64345326 + L1 LINE L1 4095 4270 -1876 269 287 66 16 chr9 53517301 53517423 -64345204 + MER65B LTR ERV1 1 128 -403 258 226 94 75 chr9 53519137 53519243 -64343384 - HUERS-P3b LTR ERV1 -7310 108 1 3292 169 57 11 chr9 53519243 53519853 -64342774 - LTR9B LTR ERV1 0 644 7 1841 93 24 38 chr9 53519856 53520147 -64342480 - THE1B LTR MaLR -70 294 8 1951 144 39 0 chr9 53520160 53520472 -64342155 - L1P LINE L1 -1924 4222 3899 1359 199 186 13 chr9 53520572 53520960 -64341667 - MLT1C LTR MaLR -7 460 6 275 309 17 34 chr9 53521036 53521214 -64341413 - L1MEc LINE L1 -5066 2056 1882 665 296 82 17 chr9 53521289 53521644 -64340983 - L1MEc LINE L1 -4890 1533 1156 234 250 29 0 chr9 53521670 53521738 -64340889 + (TA)n Simple_repeat Simple_repeat 1 70 0 1443 160 71 19 chr9 53521738 53522007 -64340620 - AluJo SINE Alu -29 283 1 2422 186 68 19 chr9 53522273 53523282 -64339345 - L1PBa LINE L1 -3261 3601 2500 21 0 0 0 chr9 53525094 53525115 -64337512 + AT_rich Low_complexity Low_complexity 1 21 0 2188 81 42 3 chr9 53525116 53525400 -64337227 + AluSx SINE Alu 2 296 -16 1507 79 0 10 chr9 53525509 53525712 -64336915 + AluY SINE Alu 111 311 0 3499 183 63 11 chr9 53525723 53526785 -64335842 + L1P4 LINE L1 4492 5593 -572 837 138 10 117 chr9 53526895 53526944 -64335683 + MER34 LTR ERV1 27 80 -462 870 150 8 15 chr9 53526944 53527077 -64335550 + FLAM_C SINE Alu 1 132 -1 837 138 10 117 chr9 53527077 53527223 -64335404 + MER34 LTR ERV1 80 201 -341 818 227 69 30 chr9 53527261 53527464 -64335163 + MER34 LTR ERV1 300 510 -32 723 161 0 0 chr9 53527557 53527669 -64334958 + FLAM_A SINE Alu 28 139 -3 426 280 25 8 chr9 53527933 53528051 -64334576 + MER65A-int LTR ERV1 3622 3741 -1130 1667 274 39 16 chr9 53528062 53528547 -64334080 + MER65A-int LTR ERV1 4376 4871 0 366 250 58 0 chr9 53528565 53528669 -64333958 + MER65A LTR ERV1 19 128 -317 8264 17 5 0 chr9 53528944 53530578 -64332049 + L1PA2 LINE L1 4516 6153 -2 24 0 0 0 chr9 53530612 53530636 -64331991 + AT_rich Low_complexity Low_complexity 1 24 0 365 182 234 0 chr9 53530680 53530757 -64331870 - MER30 DNA MER1_type 0 230 136 320 291 176 16 chr9 53530814 53531142 -64331485 + L1ME4a LINE L1 5736 6096 -25 24 67 0 0 chr9 53531778 53531823 -64330804 + AT_rich Low_complexity Low_complexity 1 45 0 188 200 0 0 chr9 53531949 53531984 -64330643 - MIR SINE MIR -116 146 112 1967 91 76 0 chr9 53532602 53532951 -64329676 + AluSq SINE Alu 1 370 0 2090 88 3 3 chr9 53533048 53533365 -64329262 + AluY SINE Alu 1 317 0 756 270 20 5 chr9 53533516 53533712 -64328915 + MIR SINE MIR 29 227 -35 840 239 16 0 chr9 53533819 53534007 -64328620 + L1MB2 LINE L1 4603 4793 -1353 787 181 81 44 chr9 53534007 53534167 -64328460 + FRAM SINE Alu 1 164 -12 5257 160 22 31 chr9 53534167 53534841 -64327786 + L1MB2 LINE L1 4786 5465 -706 203 79 26 0 chr9 53534841 53534879 -64327748 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5257 160 22 31 chr9 53534879 53535169 -64327458 + L1MB2 LINE L1 5465 5756 -415 1931 146 187 11 chr9 53535169 53535532 -64327095 - MSTA LTR MaLR -1 427 1 5257 160 22 31 chr9 53535532 53535959 -64326668 + L1MB2 LINE L1 5756 6171 0 27 62 0 0 chr9 53536770 53536818 -64325809 + AT_rich Low_complexity Low_complexity 1 48 0 2184 111 0 23 chr9 53536864 53537170 -64325457 - AluSp SINE Alu -14 299 1 1112 214 38 14 chr9 53537184 53537473 -64325154 - L1MA4 LINE L1 0 6300 6005 755 281 45 52 chr9 53537513 53537823 -64324804 + MLT1K LTR MaLR 25 332 -256 342 218 22 22 chr9 53538292 53538471 -64324156 + (TA)n Simple_repeat Simple_repeat 1 179 0 1772 158 18 24 chr9 53538483 53538811 -64323816 - L1MA7 LINE L1 -29 6262 5937 2370 88 0 0 chr9 53539258 53539553 -64323074 - AluSx SINE Alu -17 295 1 306 274 12 12 chr9 53539556 53539640 -64322987 + MIR SINE MIR 66 149 -113 2273 154 31 18 chr9 53539916 53540299 -64322328 + MLT1B LTR MaLR 1 388 -2 1502 196 16 16 chr9 53540945 53541257 -64321370 - AluJb SINE Alu 0 312 1 262 125 0 0 chr9 53541274 53541314 -64321313 - FLAM SINE Alu -8 125 86 1147 193 0 35 chr9 53541314 53541542 -64321085 - AluJo SINE Alu -92 220 1 182 270 87 79 chr9 53542163 53542289 -64320338 - L2 LINE L2 -9 3263 3137 1881 149 7 17 chr9 53543859 53544155 -64318472 - AluJo SINE Alu -14 298 6 387 321 54 24 chr9 53544179 53544347 -64318280 + MIR3 SINE MIR 11 183 -25 245 220 0 20 chr9 53544533 53544583 -64318044 + Alu SINE Alu 66 114 -188 271 308 86 8 chr9 53547188 53547305 -64315322 + MIR SINE MIR 28 153 -109 938 106 13 53 chr9 53547331 53547482 -64315145 + AluSc SINE Alu 133 277 -32 2321 103 0 0 chr9 53547941 53548243 -64314384 - AluSg SINE Alu -8 302 1 2158 125 0 31 chr9 53548663 53548984 -64313643 - AluSx SINE Alu -1 311 1 24 0 0 0 chr9 53549258 53549282 -64313345 + AT_rich Low_complexity Low_complexity 1 24 0 31 68 0 0 chr9 53549384 53549443 -64313184 + AT_rich Low_complexity Low_complexity 1 59 0 1946 137 7 7 chr9 53549554 53549839 -64312788 - AluSx SINE Alu -27 285 1 487 254 35 92 chr9 53550224 53550452 -64312175 - L2 LINE L2 -4 3309 3095 878 190 39 0 chr9 53550454 53550633 -64311994 - MER20 DNA MER1_type 0 219 34 263 292 0 0 chr9 53550841 53550913 -64311714 + LTR33 LTR ERVL 1 72 -449 198 0 0 0 chr9 53550944 53550966 -64311661 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 1996 100 0 0 chr9 53550968 53551227 -64311400 - AluSq SINE Alu -54 259 1 544 301 64 15 chr9 53551296 53551562 -64311065 + LTR33 LTR ERVL 235 513 -8 2241 102 7 0 chr9 53552553 53552847 -64309780 - AluSx SINE Alu -15 297 2 2501 141 27 7 chr9 53553798 53554203 -64308424 + MLT2C2 LTR ERVL 1 413 -51 672 204 204 44 chr9 53555049 53555275 -64307352 + ORSL DNA AcHobo 14 275 0 943 172 75 0 chr9 53555560 53555734 -64306893 - MER5A DNA MER1_type 0 189 3 349 331 106 0 chr9 53556353 53556495 -64306132 - MIR3 SINE MIR -15 193 37 2197 112 7 0 chr9 53556565 53556859 -64305768 - AluSx SINE Alu -16 296 1 203 273 91 11 chr9 53557011 53557099 -64305528 + L2 LINE L2 3153 3247 -25 189 0 0 0 chr9 53557111 53557132 -64305495 + (TGAA)n Simple_repeat Simple_repeat 1 21 0 331 330 141 0 chr9 53557322 53557528 -64305099 + MIR SINE MIR 21 255 -7 36 0 0 0 chr9 53558695 53558731 -64303896 + AT_rich Low_complexity Low_complexity 1 36 0 2119 105 0 0 chr9 53558741 53559026 -64303601 - AluSx SINE Alu -27 285 1 24 0 0 0 chr9 53565938 53565962 -64296665 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr9 53566578 53566600 -64296027 + AT_rich Low_complexity Low_complexity 1 22 0 1008 269 4 4 chr9 53566645 53566879 -64295748 - MIR SINE MIR -2 260 27 1683 169 7 7 chr9 53568901 53569196 -64293431 - AluJb SINE Alu -17 295 1 315 266 0 0 chr9 53569285 53569349 -64293278 + L2 LINE L2 3208 3271 -1 385 260 185 14 chr9 53570767 53570913 -64291714 + MER5A DNA MER1_type 18 188 -1 31 0 0 0 chr9 53571166 53571197 -64291430 + AT_rich Low_complexity Low_complexity 1 31 0 2535 88 0 3 chr9 53571197 53571515 -64291112 - L1PA8A LINE L1 -13 6118 5802 1406 309 121 33 chr9 53572849 53573716 -64288911 + L2 LINE L2 1815 2757 -557 898 163 8 0 chr9 53574005 53574134 -64288493 + FLAM_C SINE Alu 1 130 -3 1856 174 3 0 chr9 53574155 53574448 -64288179 - AluJb SINE Alu -18 294 1 1053 238 4 0 chr9 53574448 53574692 -64287935 + L1ME4a LINE L1 5639 5883 -238 558 237 169 16 chr9 53574871 53575081 -64287546 + MIR SINE MIR 17 252 -10 21 0 0 0 chr9 53575100 53575121 -64287506 + AT_rich Low_complexity Low_complexity 1 21 0 1796 68 51 4 chr9 53575370 53575606 -64287021 + AluY SINE Alu 38 284 -27 183 42 0 0 chr9 53576011 53576035 -64286592 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2117 117 0 36 chr9 53576563 53576871 -64285756 - AluSx SINE Alu -15 297 1 588 321 46 21 chr9 53577135 53577372 -64285255 - MIR SINE MIR -17 245 3 2326 62 42 0 chr9 53578308 53578596 -64284031 - AluY SINE Alu -11 300 1 1574 148 3 64 chr9 53578803 53579101 -64283526 + AluJb SINE Alu 1 280 -32 262 303 0 0 chr9 53580495 53580561 -64282066 - MLT1K LTR MaLR -7 581 516 236 259 43 43 chr9 53580505 53580621 -64282006 - LTR67 LTR ERVL -15 542 427 * 232 245 0 0 chr9 53581007 53581060 -64281567 + (CA)n Simple_repeat Simple_repeat 2 54 0 1151 142 117 5 chr9 53581660 53581857 -64280770 - MER20 DNA MER1_type 0 219 1 189 171 0 0 chr9 53582252 53582287 -64280340 + T-rich Low_complexity Low_complexity 1 35 0 2056 130 3 13 chr9 53582337 53582644 -64279983 - AluSx SINE Alu -8 304 1 545 237 35 69 chr9 53582937 53583110 -64279517 - MER5B DNA MER1_type -6 172 6 505 316 117 13 chr9 53583312 53583543 -64279084 + MIR SINE MIR 1 255 -7 924 166 86 17 chr9 53583846 53584021 -64278606 - MER5A DNA MER1_type 0 189 3 247 231 19 0 chr9 53584027 53584079 -64278548 + MIR SINE MIR 89 141 -67 23 0 0 0 chr9 53584282 53584305 -64278322 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr9 53584373 53584408 -64278219 + AT_rich Low_complexity Low_complexity 1 35 0 435 172 115 49 chr9 53585047 53585169 -64277458 - MER5A DNA MER1_type -51 138 9 2255 92 3 10 chr9 53585246 53585539 -64277088 + AluSg SINE Alu 1 291 -19 195 42 0 0 chr9 53585862 53585886 -64276741 + (CA)n Simple_repeat Simple_repeat 2 25 0 309 82 0 0 chr9 53585903 53585952 -64276675 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 1870 136 24 20 chr9 53585952 53586247 -64276380 - AluJb SINE Alu -15 297 2 2390 65 23 7 chr9 53586659 53586965 -64275662 + AluY SINE Alu 1 311 0 381 43 0 0 chr9 53588005 53588052 -64274575 + (TTCA)n Simple_repeat Simple_repeat 3 49 0 1625 165 36 21 chr9 53588052 53588331 -64274296 - AluJb SINE Alu -29 283 1 316 218 51 0 chr9 53588808 53588886 -64273741 + MIR3 SINE MIR 127 208 0 634 266 65 0 chr9 53589040 53589224 -64273403 + MIR SINE MIR 36 231 -31 618 287 93 45 chr9 53589320 53589630 -64272997 + MLT1K LTR MaLR 102 426 -162 457 294 67 29 chr9 53589632 53589870 -64272757 + MLT1K LTR MaLR 324 570 -18 216 97 0 0 chr9 53590034 53590065 -64272562 + (T)n Simple_repeat Simple_repeat 1 31 0 364 324 0 19 chr9 53590436 53590544 -64272083 - MIR SINE MIR -63 145 40 264 30 0 0 chr9 53590755 53590788 -64271839 + (TG)n Simple_repeat Simple_repeat 2 34 0 2046 194 3 6 chr9 53591046 53591406 -64271221 - MLT1A1 LTR MaLR 0 365 7 227 253 74 53 chr9 53593595 53593690 -64268937 - MIR SINE MIR -58 204 108 486 251 29 40 chr9 53594113 53594288 -64268339 - MER46C DNA MER2_type -7 331 159 1874 114 77 4 chr9 53594432 53594705 -64267922 + AluSg SINE Alu 3 295 -15 2488 74 0 0 chr9 53594794 53595093 -64267534 + AluY SINE Alu 1 299 -12 41 36 0 0 chr9 53595310 53595365 -64267262 + AT_rich Low_complexity Low_complexity 1 55 0 804 100 0 0 chr9 53596047 53596157 -64266470 + MER83 LTR ERV1 1 110 -338 * 1854 140 77 59 chr9 53596156 53596548 -64266079 + MER83 LTR ERV1 50 448 0 525 282 76 53 chr9 53596916 53596958 -64265669 + L1MB7 LINE L1 5255 5295 -867 1684 194 3 13 chr9 53596958 53597272 -64265355 + AluJb SINE Alu 1 311 -1 525 282 76 53 chr9 53597272 53597521 -64265106 + L1MB7 LINE L1 5295 5549 -613 2809 86 19 19 chr9 53597521 53597894 -64264733 + THE1C LTR MaLR 3 375 0 525 282 76 53 chr9 53597894 53598104 -64264523 + L1MB7 LINE L1 5549 5753 -409 4131 149 39 35 chr9 53599711 53600435 -64262192 + LTR8A LTR ERV1 1 727 0 3567 195 46 36 chr9 53600726 53601050 -64261577 + MER21B LTR ERV1 1 320 -543 2952 9 0 0 chr9 53601050 53601368 -64261259 + AluYb8 SINE Alu 1 318 0 3567 195 46 36 chr9 53601368 53601844 -64260783 + MER21B LTR ERV1 320 809 -54 419 296 92 24 chr9 53602003 53602209 -64260418 - MIR SINE MIR -14 248 29 2231 100 3 10 chr9 53602421 53602722 -64259905 - AluSg SINE Alu -11 299 1 197 270 163 61 chr9 53602875 53603071 -64259556 - L2 LINE L2 -1 3271 3056 896 208 71 9 chr9 53603072 53603284 -64259343 + L1MB7 LINE L1 5947 6171 -13 313 264 71 65 chr9 53603293 53603448 -64259179 - L2 LINE L2 -203 3069 2914 4888 153 9 24 chr9 53603552 53604347 -64258280 + LTR39 LTR ERV1 1 783 0 520 221 47 8 chr9 53604526 53604653 -64257974 + MER21B LTR ERV1 11 142 -721 * 1557 212 90 44 chr9 53604643 53605100 -64257527 + MER21B LTR ERV1 326 803 -60 339 44 0 0 chr9 53605872 53605917 -64256710 + (CA)n Simple_repeat Simple_repeat 2 46 0 481 281 50 84 chr9 53606646 53606712 -64255915 - L3 LINE CR1 -3 1574 1507 2699 48 0 0 chr9 53606712 53607022 -64255605 - AluY SINE Alu 0 311 2 481 281 50 84 chr9 53607022 53607193 -64255434 - L3 LINE CR1 -70 1507 1345 435 319 63 46 chr9 53607238 53607476 -64255151 - MIR SINE MIR 0 262 21 1821 182 7 0 chr9 53607659 53607950 -64254677 - AluJb SINE Alu -15 297 5 334 245 10 138 chr9 53608136 53608289 -64254338 - MER5B DNA MER1_type -4 174 50 2196 59 0 15 chr9 53608289 53608562 -64254065 + AluY SINE Alu 31 299 -12 334 245 10 138 chr9 53608562 53608604 -64254023 - MER5B DNA MER1_type -128 50 4 207 260 0 97 chr9 53608637 53608719 -64253908 - MIR SINE MIR -107 101 27 2403 83 0 13 chr9 53609311 53609624 -64253003 + AluSc SINE Alu 1 309 0 326 284 124 57 chr9 53609751 53609945 -64252682 + L2 LINE L2 3106 3312 -1 358 155 107 78 chr9 53610244 53610326 -64252301 - MER5A DNA MER1_type -77 112 25 1879 155 3 7 chr9 53610326 53610629 -64251998 - AluJb SINE Alu -10 302 1 358 155 107 78 chr9 53610629 53610649 -64251978 - MER5A DNA MER1_type -164 25 7 957 176 137 0 chr9 53612306 53612488 -64250139 + AluJb SINE Alu 1 207 -105 31 0 0 0 chr9 53612637 53612668 -64249959 + AT_rich Low_complexity Low_complexity 1 31 0 858 189 59 0 chr9 53613129 53613282 -64249345 - FRAM SINE Alu -13 163 2 4162 166 111 7 chr9 53613893 53614641 -64247986 + LTR1B LTR ERV1 1 826 0 269 180 20 0 chr9 53614828 53614878 -64247749 + L2 LINE L2 3222 3272 0 2173 112 20 0 chr9 53615436 53615731 -64246896 + AluSx SINE Alu 1 301 -11 514 255 165 20 chr9 53617771 53617971 -64244656 + MIR SINE MIR 2 230 -32 1562 286 150 49 chr9 53618714 53618852 -64243775 - L2 LINE L2 0 3313 3190 279 79 0 0 chr9 53618852 53618890 -64243737 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 1562 286 150 49 chr9 53618890 53620140 -64242487 - L2 LINE L2 -123 3190 1785 360 103 0 0 chr9 53620224 53620282 -64242345 + (TCCA)n Simple_repeat Simple_repeat 4 61 0 509 300 71 12 chr9 53620325 53620495 -64242132 + MIR3 SINE MIR 20 199 -9 2345 77 0 10 chr9 53620527 53620825 -64241802 + AluSc SINE Alu 1 295 -14 555 321 75 73 chr9 53621227 53621732 -64240895 + L2 LINE L2 2807 3312 -1 2277 110 3 0 chr9 53621796 53622104 -64240523 + AluSq SINE Alu 1 309 -4 2218 117 0 0 chr9 53622821 53623119 -64239508 - AluSx SINE Alu -14 298 1 396 59 0 0 chr9 53623200 53623251 -64239376 + (TG)n Simple_repeat Simple_repeat 2 52 0 324 91 0 0 chr9 53623803 53623847 -64238780 + U5 snRNA snRNA 1 44 -72 625 338 37 14 chr9 53623861 53624072 -64238555 - L1MC4a LINE L1 -1900 5908 5684 2078 78 4 11 chr9 53624072 53624340 -64238287 - AluSp SINE Alu -36 277 12 625 338 37 14 chr9 53624340 53624480 -64238147 - L1MC4a LINE L1 -2124 5684 5549 207 240 227 0 chr9 53626021 53626096 -64236531 - L2 LINE L2 -19 3294 3203 31 0 0 0 chr9 53626949 53626980 -64235647 + AT_rich Low_complexity Low_complexity 1 31 0 1732 190 3 3 chr9 53627191 53627491 -64235136 - AluJb SINE Alu -12 300 1 2427 85 0 0 chr9 53628065 53628370 -64234257 - AluSq SINE Alu -8 305 1 1945 143 0 40 chr9 53628742 53629064 -64233563 - AluJb SINE Alu -3 309 1 2334 117 3 0 chr9 53629077 53629385 -64233242 - AluSx SINE Alu -3 309 1 277 320 200 15 chr9 53629463 53629663 -64232964 + MIR SINE MIR 13 249 -13 1913 162 0 13 chr9 53629925 53630227 -64232400 - AluJo SINE Alu -14 298 1 2314 129 74 14 chr9 53630764 53631129 -64231498 - L1PB4 LINE L1 -1 6155 5769 2168 132 6 3 chr9 53631131 53631442 -64231185 - AluSx SINE Alu 0 312 1 473 580 0 6 chr9 53631514 53631688 -64230939 + (CA)n Simple_repeat Simple_repeat 2 174 0 1565 267 46 27 chr9 53632278 53632786 -64229841 - L2 LINE L2 0 3313 2799 661 229 84 12 chr9 53632786 53632952 -64229675 + MER5B DNA MER1_type 1 178 0 1565 267 46 27 chr9 53632952 53632972 -64229655 - L2 LINE L2 -514 2799 2781 408 292 12 128 chr9 53633262 53633512 -64229115 + MIR SINE MIR 6 226 -36 2360 59 0 14 chr9 53635147 53635461 -64227166 + AluY SINE Alu 1 310 0 243 0 0 0 chr9 53635478 53635505 -64227122 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 765 302 86 51 chr9 53635638 53636512 -64226115 + L2 LINE L2 2372 3279 -34 2510 70 0 0 chr9 53636674 53636975 -64225652 + AluY SINE Alu 1 301 -10 567 291 85 23 chr9 53637106 53637323 -64225304 + MIR SINE MIR 13 237 -25 274 340 201 0 chr9 53637584 53637728 -64224899 + MIR3 SINE MIR 10 182 -26 2206 123 0 0 chr9 53637873 53638174 -64224453 - AluSx SINE Alu -7 305 5 277 306 74 19 chr9 53638225 53638333 -64224294 - MIR SINE MIR -30 232 119 284 325 172 0 chr9 53639137 53639300 -64223327 + MIR3 SINE MIR 3 193 -15 180 385 0 0 chr9 53639926 53639978 -64222649 + L2 LINE L2 2938 2989 -283 210 37 0 0 chr9 53640475 53640502 -64222125 + (TG)n Simple_repeat Simple_repeat 2 28 0 206 285 19 122 chr9 53641380 53641594 -64221033 + L2 LINE L2 2227 2418 -896 240 231 0 48 chr9 53641996 53642100 -64220527 + T-rich Low_complexity Low_complexity 2 100 0 339 44 0 0 chr9 53642538 53642583 -64220044 + (CA)n Simple_repeat Simple_repeat 2 46 0 481 281 50 84 chr9 53643312 53643378 -64219249 - L3 LINE CR1 -3 1574 1507 2699 48 0 0 chr9 53643378 53643688 -64218939 - AluY SINE Alu 0 311 2 481 281 50 84 chr9 53643688 53643859 -64218768 - L3 LINE CR1 -70 1507 1345 435 319 63 46 chr9 53643904 53644142 -64218485 - MIR SINE MIR 0 262 21 1821 182 7 0 chr9 53644325 53644616 -64218011 - AluJb SINE Alu -15 297 5 334 245 10 138 chr9 53644802 53644955 -64217672 - MER5B DNA MER1_type -4 174 50 2196 59 0 15 chr9 53644955 53645228 -64217399 + AluY SINE Alu 31 299 -12 334 245 10 138 chr9 53645228 53645270 -64217357 - MER5B DNA MER1_type -128 50 4 207 260 0 97 chr9 53645303 53645385 -64217242 - MIR SINE MIR -107 101 27 2222 98 0 16 chr9 53645977 53646282 -64216345 + AluSx SINE Alu 1 300 -12 196 392 13 13 chr9 53647167 53647246 -64215381 + L2 LINE L2 2981 3059 -254 695 177 24 61 chr9 53647412 53647498 -64215129 + L1PB4 LINE L1 5998 6077 -79 2262 107 7 0 chr9 53647498 53647798 -64214829 + AluSc SINE Alu 1 302 -7 695 177 24 61 chr9 53647798 53647875 -64214752 + L1PB4 LINE L1 6077 6155 -1 1586 210 42 23 chr9 53650892 53651245 -64211382 - MER63 DNA MER1_type 0 1062 703 222 368 32 0 chr9 53651466 53651561 -64211066 - MIR SINE MIR -109 153 56 1201 148 19 19 chr9 53653148 53653364 -64209263 + L1MA9 LINE L1 5898 6113 -199 2888 82 25 0 chr9 53654188 53654543 -64208084 + THE1B LTR MaLR 1 364 0 208 318 141 0 chr9 53655092 53655177 -64207450 - MIR SINE MIR -119 143 47 346 362 9 0 chr9 53655865 53655981 -64206646 - MIR3 SINE MIR -77 131 15 414 297 125 10 chr9 53656197 53656389 -64206238 - MIR SINE MIR -13 249 36 2339 98 0 0 chr9 53656445 53656751 -64205876 + AluSc SINE Alu 4 309 0 502 331 0 58 chr9 53656764 53657021 -64205606 + MIR SINE MIR 20 261 -1 997 213 188 60 chr9 53658879 53659246 -64203381 + MLT2B1 LTR ERVL 1 414 0 198 71 0 0 chr9 53659278 53659306 -64203321 + (CA)n Simple_repeat Simple_repeat 1 28 0 180 0 0 0 chr9 53659636 53659656 -64202971 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2865 157 16 12 chr9 53660376 53660867 -64201760 - L1MB2 LINE L1 -2 6169 5677 2297 116 0 0 chr9 53661313 53661614 -64201013 + AluSq SINE Alu 1 301 -12 2966 44 0 0 chr9 53662178 53662520 -64200107 - L1PA5 LINE L1 0 6154 5813 31 58 0 0 chr9 53664228 53664280 -64198347 + AT_rich Low_complexity Low_complexity 1 52 0 411 344 31 5 chr9 53666669 53666861 -64195766 + LTR33 LTR ERVL 3 199 -322 357 143 0 0 chr9 53667143 53667197 -64195430 + Alu SINE Alu 1 48 -254 292 278 139 0 chr9 53667197 53667305 -64195322 + MLT1H LTR MaLR 100 222 -327 1222 193 119 28 chr9 53667548 53667833 -64194794 + AluJb SINE Alu 1 311 -1 505 299 129 9 chr9 53668005 53668222 -64194405 + MIR SINE MIR 6 248 -14 1053 179 10 46 chr9 53668297 53668492 -64194135 + MER5A DNA MER1_type 1 188 -1 688 252 92 46 chr9 53668679 53668715 -64193912 - MIR SINE MIR -10 252 219 2447 58 0 35 chr9 53668715 53669027 -64193600 - AluY SINE Alu -10 301 1 688 252 92 46 chr9 53669027 53669228 -64193399 - MIR SINE MIR -43 219 4 321 118 0 0 chr9 53669230 53669281 -64193346 + (TG)n Simple_repeat Simple_repeat 2 52 0 1263 138 65 97 chr9 53669292 53669582 -64193045 - AluJo SINE Alu -31 281 1 1701 93 5 0 chr9 53670215 53670431 -64192196 - AluSx SINE Alu -95 217 1 1033 216 125 76 chr9 53672025 53672566 -64190061 + LTR8A LTR ERV1 1 583 -144 1148 151 57 5 chr9 53672567 53672779 -64189848 + AluSq SINE Alu 1 223 -90 348 24 0 0 chr9 53672899 53672940 -64189687 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 432 269 0 35 chr9 53672940 53673085 -64189542 + LTR26E LTR ERV1 467 606 -16 613 275 158 30 chr9 53673722 53673855 -64188772 + L2 LINE L2 2904 3019 -294 3494 56 5 0 chr9 53673855 53674263 -64188364 - L1PA7 LINE L1 0 6154 5745 613 275 158 30 chr9 53674263 53674464 -64188163 + L2 LINE L2 3019 3281 -32 2395 95 3 0 chr9 53675570 53675875 -64186752 + AluSx SINE Alu 1 306 -6 22 0 0 0 chr9 53676919 53676941 -64185686 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr9 53677519 53677540 -64185087 + (TA)n Simple_repeat Simple_repeat 2 22 0 192 77 0 0 chr9 53678624 53678650 -64183977 + (TC)n Simple_repeat Simple_repeat 1 26 0 193 318 0 0 chr9 53678688 53678732 -64183895 + L2 LINE L2 3220 3263 -9 2552 53 0 3 chr9 53679572 53679872 -64182755 + AluY SINE Alu 1 299 -12 282 167 74 0 chr9 53680063 53680117 -64182510 + MER91C DNA MER1_type 33 90 -50 1945 163 54 21 chr9 53680314 53680645 -64181982 - MER2 DNA MER2_type -2 342 1 2009 152 0 0 chr9 53680808 53681097 -64181530 - AluSx SINE Alu -23 289 1 219 233 62 85 chr9 53681562 53681691 -64180936 - L2 LINE L2 -167 3105 2980 660 263 8 65 chr9 53681743 53681769 -64180858 + L1MC5 LINE L1 7703 7729 -313 402 39 0 0 chr9 53681769 53681821 -64180806 + (CA)n Simple_repeat Simple_repeat 2 53 0 660 263 8 65 chr9 53681821 53681986 -64180641 + L1MC5 LINE L1 7729 7958 -84 2088 212 71 5 chr9 53681986 53682424 -64180203 + MLT1C LTR MaLR 1 467 0 660 263 8 65 chr9 53682424 53682504 -64180123 + L1MC5 LINE L1 7958 8041 -1 183 200 0 133 chr9 53683424 53683499 -64179128 + MIR SINE MIR 113 177 -85 557 331 69 48 chr9 53684187 53684523 -64178104 + L2 LINE L2 2829 3178 -94 2265 85 7 0 chr9 53684523 53684832 -64177795 - AluSg SINE Alu 0 311 1 557 331 69 48 chr9 53684832 53684929 -64177698 + L2 LINE L2 3178 3272 0 318 232 6 140 chr9 53685018 53685182 -64177445 - MER5A DNA MER1_type -7 182 41 * 365 240 0 13 chr9 53685132 53685207 -64177420 + MER5A DNA MER1_type 113 186 -3 496 291 19 19 chr9 53686131 53686289 -64176338 + MIR3 SINE MIR 37 194 -14 1789 136 48 4 chr9 53686390 53686662 -64175965 + AluSx SINE Alu 1 284 -28 189 0 0 0 chr9 53686667 53686688 -64175939 + (CA)n Simple_repeat Simple_repeat 2 22 0 21 57 0 0 chr9 53687830 53687865 -64174762 + AT_rich Low_complexity Low_complexity 1 35 0 2169 96 0 0 chr9 53688080 53688396 -64174231 - AluSc SINE Alu 0 316 1 219 148 19 37 chr9 53689107 53689161 -64173466 + CT-rich Low_complexity Low_complexity 3 55 0 3075 270 126 39 chr9 53691061 53691375 -64171252 - L1MEc LINE L1 -1730 4485 4200 2317 102 0 3 chr9 53691375 53691679 -64170948 + AluSx SINE Alu 1 303 -9 3075 270 126 39 chr9 53691679 53691763 -64170864 - L1MEc LINE L1 -2015 4200 4125 2297 80 10 10 chr9 53691763 53692074 -64170553 - AluY SINE Alu 0 311 1 3075 270 126 39 chr9 53692074 53694323 -64168304 - L1MEc LINE L1 -2090 4125 1624 2133 69 4 0 chr9 53694329 53694590 -64168037 + AluY SINE Alu 1 262 -49 381 258 210 56 chr9 53695674 53695754 -64166873 - MIR SINE MIR -19 243 177 1125 235 157 20 chr9 53695754 53696150 -64166477 - MLT1J2 LTR MaLR 0 450 1 381 258 210 56 chr9 53696150 53696282 -64166345 - MIR SINE MIR -85 177 1 2418 89 7 0 chr9 53697342 53697644 -64164983 - AluSq SINE Alu -9 304 1 419 263 59 46 chr9 53697680 53698022 -64164605 - L1M3de LINE L1 -4676 1460 1055 185 159 0 45 chr9 53698273 53698317 -64164310 + L2 LINE L2 1823 1864 -1450 1019 249 5 0 chr9 53698365 53698566 -64164061 - MER58A DNA MER1_type -22 202 1 2202 112 0 3 chr9 53698977 53699280 -64163347 - AluSx SINE Alu -10 302 1 719 324 55 41 chr9 53699438 53700080 -64162547 + L2 LINE L2 2619 3272 0 253 270 45 27 chr9 53700120 53700231 -64162396 - MIR SINE MIR -55 207 95 346 136 0 51 chr9 53701154 53701213 -64161414 - L2 LINE L2 -2 3311 3256 467 111 0 12 chr9 53702257 53702338 -64160289 + (TAGA)n Simple_repeat Simple_repeat 3 82 0 349 196 134 21 chr9 53702616 53702713 -64159914 - MIR SINE MIR -62 146 39 419 236 98 16 chr9 53702967 53703090 -64159537 - L2 LINE L2 -1 3312 3180 572 267 61 117 chr9 53703394 53703561 -64159066 + MER102b DNA MER1_type 2 140 -1288 2355 84 0 3 chr9 53703561 53703857 -64158770 - AluY SINE Alu -16 295 1 572 267 61 117 chr9 53703857 53704048 -64158579 + MER102b DNA MER1_type 140 340 -1 1495 102 0 0 chr9 53704228 53704414 -64158213 - AluSq SINE Alu -127 186 1 258 255 6 204 chr9 53704664 53704747 -64157880 - MIR3 SINE MIR -46 162 123 1856 157 0 50 chr9 53704747 53705065 -64157562 + AluJb SINE Alu 1 302 -10 258 255 6 204 chr9 53705065 53705138 -64157489 - MIR3 SINE MIR -85 123 37 2301 110 0 0 chr9 53705676 53705976 -64156651 - AluSx SINE Alu -12 300 1 361 220 0 92 chr9 53706377 53706486 -64156141 + MIR SINE MIR 31 129 -133 2182 114 0 3 chr9 53706614 53706913 -64155714 - AluSg SINE Alu -12 298 1 2337 88 0 0 chr9 53708668 53708965 -64153662 + AluSq SINE Alu 1 297 -16 6716 83 24 9 chr9 53708976 53709876 -64152751 + L1PA7 LINE L1 1 914 -5547 7169 59 19 6 chr9 53709905 53711450 -64151177 + L1PA7 LINE L1 4906 6465 -4 2411 89 3 0 chr9 53711695 53711997 -64150630 - AluSq SINE Alu -10 303 1 2316 168 87 2 chr9 53712138 53712531 -64150096 + MSTB LTR MaLR 1 426 0 804 152 0 43 chr9 53712852 53712990 -64149637 + FLAM_C SINE Alu 2 133 0 1934 152 7 3 chr9 53714451 53714753 -64147874 - AluSx SINE Alu -9 303 1 243 320 26 64 chr9 53715208 53715364 -64147263 - MIR SINE MIR -79 183 34 281 156 203 0 chr9 53715433 53715497 -64147130 - LTR16C LTR ERVL -25 466 390 688 200 183 17 chr9 53715594 53715774 -64146853 - MER63A DNA MER1_type 0 210 1 257 349 9 0 chr9 53715815 53715921 -64146706 - LTR16C LTR ERVL -353 138 32 362 254 30 91 chr9 53716645 53716842 -64145785 + LTR33 LTR ERVL 33 217 -304 362 261 65 14 chr9 53716906 53717044 -64145583 + LTR33 LTR ERVL 377 521 0 2302 105 3 0 chr9 53717841 53718145 -64144482 - AluSx SINE Alu -7 305 1 221 284 86 12 chr9 53719651 53719732 -64142895 + L2 LINE L2 3168 3254 -18 293 296 35 9 chr9 53719964 53720079 -64142548 + L3 LINE CR1 1395 1512 -65 2252 197 22 5 chr9 53721059 53721402 -64141225 - MLT1C LTR MaLR 0 467 114 1849 163 3 3 chr9 53721402 53721703 -64140924 - AluJb SINE Alu -11 301 1 2252 197 22 5 chr9 53721703 53721775 -64140852 - MLT1C LTR MaLR -353 114 45 2540 69 0 0 chr9 53721896 53722201 -64140426 - AluY SINE Alu -6 305 1 1835 193 41 67 chr9 53722293 53722755 -64139872 + Charlie1a DNA MER1_type 16 465 -990 991 123 59 71 chr9 53722753 53722947 -64139680 + Charlie1a DNA MER1_type 1205 1397 -1364 * 2325 85 0 23 chr9 53722947 53723253 -64139374 - AluSg SINE Alu -11 299 1 991 123 59 71 chr9 53723253 53723311 -64139316 + Charlie1a DNA MER1_type 1397 1454 -1 1658 145 89 39 chr9 53723390 53723604 -64139023 - L1MB5 LINE L1 0 6174 5935 2305 105 0 3 chr9 53723604 53723908 -64138719 - AluSg SINE Alu -7 303 1 1658 145 89 39 chr9 53723908 53724030 -64138597 - L1MB5 LINE L1 -239 5935 5821 27 0 0 0 chr9 53724030 53724057 -64138570 + AT_rich Low_complexity Low_complexity 1 27 0 2598 129 42 40 chr9 53724392 53724819 -64137808 - MSTA LTR MaLR 0 428 1 256 350 75 0 chr9 53724876 53724996 -64137631 + MIR3 SINE MIR 2 130 -78 416 253 105 12 chr9 53725070 53725232 -64137395 + MER113 DNA MER1_type? 19 195 -326 646 156 62 0 chr9 53725756 53725884 -64136743 + MLT1H LTR MaLR 39 174 -375 298 287 43 0 chr9 53725884 53725978 -64136649 + MIR SINE MIR 164 261 -1 345 243 64 86 chr9 53726342 53726482 -64136145 - MIR SINE MIR -32 230 94 266 311 38 53 chr9 53726770 53726902 -64135725 - MIR SINE MIR -59 149 20 720 283 26 0 chr9 53727641 53727832 -64134795 + MIR SINE MIR 2 197 -65 2301 84 0 32 chr9 53727885 53728195 -64134432 + AluSc SINE Alu 1 300 -9 318 300 130 0 chr9 53728253 53728353 -64134274 - MIR SINE MIR -130 132 20 380 232 21 78 chr9 53728959 53729101 -64133526 - MIR SINE MIR -25 237 104 883 269 44 50 chr9 53729488 53729861 -64132766 + MLT1I LTR MaLR 51 391 -18 33 35 0 17 chr9 53730264 53730284 -64132343 + AT_rich Low_complexity Low_complexity 1 20 -37 2223 96 0 3 chr9 53730284 53730566 -64132061 + AluSc SINE Alu 1 281 -28 33 35 0 17 chr9 53730566 53730603 -64132024 + AT_rich Low_complexity Low_complexity 20 57 0 2151 111 0 29 chr9 53730824 53731139 -64131488 - AluSx SINE Alu -6 306 1 1757 151 50 0 chr9 53731328 53731607 -64131020 - AluJo SINE Alu -19 293 1 435 299 149 19 chr9 53731843 53731997 -64130630 + MER5A DNA MER1_type 16 189 0 519 284 57 0 chr9 53732091 53732232 -64130395 + MIR SINE MIR 56 204 -58 471 244 23 38 chr9 53733743 53733906 -64128721 + MIR SINE MIR 24 144 -64 206 301 164 0 chr9 53734247 53734320 -64128307 + MIR SINE MIR 37 121 -87 331 302 128 28 chr9 53734344 53734665 -64127962 + L1ME4a LINE L1 5568 5920 -201 180 225 38 113 chr9 53734859 53734925 -64127702 + MIR3 SINE MIR 135 196 -12 1559 169 0 77 chr9 53734925 53735263 -64127364 + AluJo SINE Alu 1 312 0 180 225 38 113 chr9 53735263 53735276 -64127351 + MIR3 SINE MIR 196 208 0 2191 103 3 20 chr9 53736726 53737028 -64125599 + AluSx SINE Alu 1 297 -15 208 0 0 0 chr9 53737765 53737788 -64124839 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2060 103 26 0 chr9 53737788 53738060 -64124567 - AluSg SINE Alu -1 304 4 256 204 10 78 chr9 53738522 53738625 -64124002 + CT-rich Low_complexity Low_complexity 2 97 0 409 268 38 120 chr9 53739289 53739386 -64123241 + MIR SINE MIR 14 91 -161 2249 116 0 19 chr9 53739386 53739704 -64122923 - AluSx SINE Alu 0 312 1 409 268 38 120 chr9 53739704 53739796 -64122831 + MIR SINE MIR 91 189 -63 516 239 90 36 chr9 53739990 53740157 -64122470 - MIR SINE MIR -85 177 2 232 322 122 74 chr9 53741574 53741804 -64120823 - L2 LINE L2 -1 3271 3031 337 267 56 11 chr9 53742499 53742589 -64120038 - MER91C DNA MER1_type 0 140 47 2283 85 0 0 chr9 53745567 53745876 -64116751 - AluSx SINE Alu 0 309 1 481 278 166 0 chr9 53748888 53749039 -64113588 + MER5A DNA MER1_type 13 188 -1 202 242 147 63 chr9 53749104 53749199 -64113428 + L2 LINE L2 2889 2991 -281 541 259 35 65 chr9 53749222 53749392 -64113235 + MER5B DNA MER1_type 2 166 -12 722 250 11 28 chr9 53749401 53749581 -64113046 - MER5A DNA MER1_type -3 186 10 558 292 23 86 chr9 53749600 53749857 -64112770 + L2 LINE L2 3027 3267 -5 1838 192 104 72 chr9 53750460 53750683 -64111944 - MLT1D LTR MaLR 0 505 291 2172 126 3 0 chr9 53750683 53750993 -64111634 - AluSq SINE Alu 0 313 3 1838 192 104 72 chr9 53750993 53751258 -64111369 - MLT1D LTR MaLR -214 291 1 584 191 5 162 chr9 53751360 53751564 -64111063 + MER5B DNA MER1_type 7 178 0 1890 165 58 36 chr9 53751945 53752308 -64110319 + MLT1A2 LTR MaLR 4 374 0 371 312 14 35 chr9 53752333 53752474 -64110153 - MIR3 SINE MIR -29 179 42 230 184 0 0 chr9 53752546 53752584 -64110043 - L2 LINE L2 -86 3186 3149 425 284 87 27 chr9 53752665 53752691 -64109936 + MIR SINE MIR 45 68 -194 1176 258 157 38 chr9 53752691 53753187 -64109440 + MLT1H1 LTR MaLR 1 555 0 425 284 87 27 chr9 53753187 53753340 -64109287 + MIR SINE MIR 68 227 -35 218 279 90 63 chr9 53753885 53753996 -64108631 + MIR SINE MIR 77 190 -72 21 0 0 0 chr9 53754068 53754089 -64108538 + AT_rich Low_complexity Low_complexity 1 21 0 556 282 48 43 chr9 53755255 53755464 -64107163 - MIR SINE MIR -8 254 45 198 103 0 0 chr9 53756379 53756408 -64106219 + (A)n Simple_repeat Simple_repeat 1 29 0 262 219 42 76 chr9 53757397 53757516 -64105111 + L2 LINE L2 3182 3296 -17 1140 188 126 15 chr9 53758420 53758691 -64103936 + MER39 LTR ERV1 407 707 0 648 294 108 27 chr9 53758692 53759264 -64103363 - L2 LINE L2 -129 3184 2514 493 284 38 64 chr9 53759756 53759992 -64102635 - MIR SINE MIR -3 259 30 225 240 0 0 chr9 53760990 53761040 -64101587 + L2 LINE L2 3223 3272 0 1928 146 9 19 chr9 53761254 53761569 -64101058 + AluSx SINE Alu 1 312 0 1222 202 116 134 chr9 53761770 53762255 -64100372 + MLT1C LTR MaLR 27 464 -3 1865 127 14 28 chr9 53762263 53762554 -64100073 + AluSx SINE Alu 12 298 -14 2218 80 31 10 chr9 53762554 53762843 -64099784 + AluY SINE Alu 1 295 -16 1770 138 214 8 chr9 53763621 53763976 -64098651 + MSTA LTR MaLR 1 428 0 391 336 7 0 chr9 53765053 53765202 -64097425 + L1ME LINE L1 5583 5732 -389 1664 169 4 0 chr9 53765202 53765468 -64097159 + AluJo SINE Alu 1 267 -45 1276 134 9 27 chr9 53765518 53765742 -64096885 - L1MC2 LINE L1 -324 6020 5801 286 313 90 7 chr9 53765749 53765893 -64096734 + MIR SINE MIR 101 256 -6 2378 181 87 13 chr9 53765922 53766392 -64096235 + MLT1D LTR MaLR 1 505 0 233 270 20 60 chr9 53766465 53766565 -64096062 + MLT2E LTR ERVL 40 135 -493 342 160 44 37 chr9 53766811 53766919 -64095708 + LTR67 LTR ERVL 421 557 0 856 176 0 0 chr9 53767204 53767340 -64095287 + FRAM SINE Alu 28 163 -13 459 174 10 51 chr9 53767358 53767456 -64095171 + MER31A LTR ERV1 354 447 -38 24 0 0 0 chr9 53767763 53767787 -64094840 + AT_rich Low_complexity Low_complexity 1 24 0 257 0 30 0 chr9 53768026 53768059 -64094568 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2273 90 0 7 chr9 53768062 53768350 -64094277 - AluSx SINE Alu -25 287 2 1323 235 36 21 chr9 53768351 53768687 -64093940 - MER58B DNA MER1_type 0 341 1 206 412 65 0 chr9 53768925 53769095 -64093532 + L2 LINE L2 2862 3042 -230 373 258 18 72 chr9 53770584 53770751 -64091876 - L1MEd LINE L1 -5935 184 27 2431 76 7 0 chr9 53770796 53771098 -64091529 - AluSq SINE Alu -7 306 3 700 224 0 0 chr9 53771111 53771236 -64091391 + FLAM_C SINE Alu 1 125 -8 226 170 0 19 chr9 53771304 53771357 -64091270 + T-rich Low_complexity Low_complexity 2 53 0 901 229 16 5 chr9 53772948 53773136 -64089491 - MLT1B LTR MaLR 0 390 201 210 71 0 0 chr9 53773365 53773393 -64089234 + (A)n Simple_repeat Simple_repeat 1 28 0 273 209 67 38 chr9 53775481 53775586 -64087041 - MIR SINE MIR -54 208 101 216 0 0 0 chr9 53775683 53775707 -64086920 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2202 92 11 0 chr9 53775711 53775994 -64086633 - AluSc SINE Alu -23 286 1 518 308 86 39 chr9 53775995 53776378 -64086249 - MLT1K LTR MaLR -42 546 146 1859 148 10 26 chr9 53776976 53777286 -64085341 - AluJb SINE Alu -7 305 1 30 45 0 0 chr9 53777287 53777331 -64085296 + AT_rich Low_complexity Low_complexity 1 44 0 459 304 33 12 chr9 53777469 53777709 -64084918 - L1M4 LINE L1 -1517 4629 4385 8247 19 5 0 chr9 53777709 53779284 -64083343 - L1PA4 LINE L1 -5 6150 4571 610 205 26 13 chr9 53779452 53779603 -64083024 - L1MB7 LINE L1 -7 6177 6025 1782 180 10 0 chr9 53779647 53779947 -64082680 + AluJo SINE Alu 1 303 -9 1693 186 3 16 chr9 53780154 53780460 -64082167 + AluJo SINE Alu 3 304 -8 2145 136 0 0 chr9 53780480 53780782 -64081845 + AluSx SINE Alu 11 312 0 382 343 127 16 chr9 53780791 53781176 -64081451 + L1ME3 LINE L1 5427 5854 -308 352 294 17 40 chr9 53781207 53781384 -64081243 + HAL1 LINE L1 2303 2475 -32 777 200 16 0 chr9 53782220 53782345 -64080282 + FLAM_C SINE Alu 1 127 -6 319 296 114 23 chr9 53782587 53782719 -64079908 + L2 LINE L2 3129 3272 0 218 225 51 94 chr9 53783043 53783181 -64079446 + L2 LINE L2 3002 3133 -180 477 199 73 22 chr9 53783237 53783373 -64079254 + L1ME3 LINE L1 6016 6158 -4 1600 205 30 51 chr9 53783491 53783866 -64078761 + MLT1B LTR MaLR 2 370 -20 2848 72 50 6 chr9 53783866 53784225 -64078402 - THE1C LTR MaLR 0 375 1 1600 205 30 51 chr9 53784225 53784244 -64078383 + MLT1B LTR MaLR 370 388 -2 1200 296 71 10 chr9 53784248 53784643 -64077984 + LTR16B LTR ERVL 46 464 0 4033 213 97 113 chr9 53785609 53787350 -64075277 + L2 LINE L2 1264 2976 -338 193 188 0 116 chr9 53787378 53787447 -64075180 + MIR SINE MIR 108 168 -94 264 286 23 91 chr9 53788037 53788168 -64074459 - L1M4 LINE L1 -1455 4691 4579 2099 121 23 3 chr9 53788168 53788474 -64074153 + AluSx SINE Alu 1 312 0 264 286 23 91 chr9 53788474 53788562 -64074065 - L1M4 LINE L1 -1567 4579 4487 360 258 121 61 chr9 53788972 53789104 -64073523 + LTR67 LTR ERVL 82 221 -336 1589 277 73 69 chr9 53789285 53789907 -64072720 - L1M4 LINE L1 -1652 4494 3876 1945 124 37 25 chr9 53789907 53790230 -64072397 - L1MA7 LINE L1 -6 6285 5959 1589 277 73 69 chr9 53790230 53790542 -64072085 - L1M4 LINE L1 -2270 3876 3552 2418 86 0 0 chr9 53790542 53790834 -64071793 - AluSg SINE Alu -18 292 1 1589 277 73 69 chr9 53790834 53791057 -64071570 - L1M4 LINE L1 -2594 3552 3331 1892 151 0 41 chr9 53791060 53791379 -64071248 - AluJb SINE Alu -6 306 1 448 240 16 0 chr9 53791937 53792066 -64070561 - L1M4 LINE L1 -1559 4587 4457 494 119 0 0 chr9 53792442 53792509 -64070118 - AluS SINE Alu -245 68 2 2164 133 0 0 chr9 53793185 53793487 -64069140 + AluSx SINE Alu 1 302 -10 3873 177 12 15 chr9 53793642 53794361 -64068266 + L1MA7 LINE L1 5575 6291 0 2231 94 0 0 chr9 53794372 53794679 -64067948 + AluSx SINE Alu 9 315 0 495 271 56 44 chr9 53794682 53794735 -64067892 + L1MC5 LINE L1 7586 7637 -324 938 186 129 0 chr9 53794735 53794928 -64067699 + MER20 DNA MER1_type 1 218 -1 495 271 56 44 chr9 53794928 53795214 -64067413 + L1MC5 LINE L1 7637 7929 -32 27 73 0 0 chr9 53795273 53795328 -64067299 + AT_rich Low_complexity Low_complexity 1 55 0 1869 122 40 4 chr9 53795333 53795611 -64067016 + AluSx SINE Alu 1 288 -24 24 0 0 0 chr9 53795611 53795635 -64066992 + AT_rich Low_complexity Low_complexity 1 24 0 567 331 82 44 chr9 53796395 53796761 -64065866 - L2 LINE L2 -2077 1237 858 423 183 0 0 chr9 53796761 53796832 -64065795 + LTR7 LTR ERV1 378 448 -2 307 182 0 0 chr9 53796833 53796888 -64065739 - LTR3b LTR ERVK -445 55 1 556 120 0 192 chr9 53796888 53796965 -64065662 + HERVL66 LTR ERVL 105 151 -4178 11738 34 0 49 chr9 53796965 53798421 -64064206 + SVA Other Other 1 1385 -1 556 120 0 192 chr9 53798421 53798468 -64064159 + HERVL66 LTR ERVL 151 205 -4124 3096 72 80 0 chr9 53798468 53798883 -64063744 + LTR2B LTR ERV1 1 448 -42 373 320 19 0 chr9 53798900 53799003 -64063624 - L2 LINE L2 -2445 869 765 357 265 111 8 chr9 53799834 53799951 -64062676 - L2 LINE L2 0 3272 3144 639 340 89 28 chr9 53800026 53800723 -64061904 - L2 LINE L2 -34 3238 2443 2296 95 0 3 chr9 53800879 53801175 -64061452 + AluSq SINE Alu 1 295 -18 319 247 0 0 chr9 53801175 53801264 -64061363 - L1MC4 LINE L1 -1340 6702 6614 * 379 233 0 0 chr9 53801186 53801276 -64061351 + L1MC4 LINE L1 6614 6703 -1339 369 145 0 0 chr9 53801276 53801338 -64061289 + (TA)n Simple_repeat Simple_repeat 2 63 0 837 163 77 64 chr9 53801344 53801612 -64061015 + L1MD2 LINE L1 5143 5421 -743 1076 171 0 11 chr9 53801612 53801793 -64060834 + FRAM SINE Alu 1 172 -4 1003 192 34 34 chr9 53801793 53802524 -64060103 + L1MD2 LINE L1 5420 6323 -36 278 342 82 6 chr9 53802567 53802725 -64059902 - L2 LINE L2 -1687 1627 1458 24 0 0 0 chr9 53802742 53802766 -64059861 + AT_rich Low_complexity Low_complexity 1 24 0 2245 116 3 0 chr9 53802902 53803213 -64059414 - AluSx SINE Alu 0 312 1 832 169 138 67 chr9 53803272 53803382 -64059245 + MER3 DNA MER1_type 1 102 -107 2036 162 106 8 chr9 53803382 53803741 -64058886 + MSTD LTR MaLR 3 396 0 832 169 138 67 chr9 53803741 53803825 -64058802 + MER3 DNA MER1_type 102 209 0 222 394 10 0 chr9 53804340 53804439 -64058188 + L2 LINE L2 2836 2935 -379 2155 105 0 3 chr9 53805780 53806066 -64056561 - AluSg SINE Alu -3 307 23 314 283 33 17 chr9 53806229 53806349 -64056278 - LTR67 LTR ERVL -1 556 435 929 295 134 13 chr9 53806574 53806954 -64055673 - L2 LINE L2 -2 3311 2886 2235 100 0 27 chr9 53807260 53807588 -64055039 - AluSx SINE Alu 0 320 1 1639 191 7 13 chr9 53808131 53808435 -64054192 + AluJo SINE Alu 1 302 -10 351 210 49 0 chr9 53809577 53809658 -64052969 - MIR SINE MIR -85 177 93 836 314 62 16 chr9 53810077 53810462 -64052165 + MLT1I LTR MaLR 7 409 0 298 379 43 41 chr9 53810836 53811205 -64051422 + L2 LINE L2 2608 2977 -337 688 296 111 0 chr9 53811220 53811517 -64051110 + L1MC4a LINE L1 5585 5914 -1894 672 283 101 20 chr9 53811882 53812388 -64050239 + L1MCc LINE L1 1115 1653 -4887 1322 292 57 42 chr9 53813973 53814710 -64047917 + L1MCc LINE L1 1865 2612 -4510 898 167 30 143 chr9 53814756 53815011 -64047616 + L1MC5 LINE L1 7044 7246 -715 2084 122 7 0 chr9 53815011 53815299 -64047328 + AluSx SINE Alu 1 290 -22 898 167 30 143 chr9 53815299 53815414 -64047213 + L1MC5 LINE L1 7246 7372 -589 2185 104 21 0 chr9 53815577 53815866 -64046761 - AluSx SINE Alu -17 295 1 223 167 0 0 chr9 53816954 53816990 -64045637 + L2 LINE L2 3225 3260 -12 2017 113 0 24 chr9 53818116 53818409 -64044218 - AluSx SINE Alu -16 296 11 847 190 106 0 chr9 53818695 53818837 -64043790 + AluJo SINE Alu 7 163 -149 226 149 64 32 chr9 53818971 53819065 -64043562 + (TA)n Simple_repeat Simple_repeat 2 98 0 250 338 56 0 chr9 53819155 53819297 -64043330 + L1ME4a LINE L1 5657 5806 -315 468 253 87 91 chr9 53819407 53819660 -64042967 + HAL1 LINE L1 40 291 -2216 828 194 0 11 chr9 53819660 53819844 -64042783 + L1MA6 LINE L1 6123 6297 0 1071 281 113 37 chr9 53819891 53820588 -64042039 + HAL1 LINE L1 343 1092 -1415 295 216 93 31 chr9 53820698 53820795 -64041832 + L1ME4a LINE L1 5786 5888 -233 2262 96 0 23 chr9 53821223 53821526 -64041101 + AluSx SINE Alu 6 301 -11 21 36 0 0 chr9 53821667 53821695 -64040932 + AT_rich Low_complexity Low_complexity 1 28 0 840 265 142 19 chr9 53821716 53822089 -64040538 + L1MC4a LINE L1 5751 6169 -1639 2332 99 0 13 chr9 53822115 53822429 -64040198 - AluSx SINE Alu -2 310 1 1452 223 8 0 chr9 53822668 53822933 -64039694 + Tigger7 DNA MER2_type 1 267 -2220 333 229 0 0 chr9 53822931 53822992 -64039635 + Tigger7 DNA MER2_type 2389 2449 -38 * 1866 164 88 32 chr9 53822995 53823368 -64039259 + LTR47A LTR ERVL 4 397 -55 228 233 0 0 chr9 53823383 53823426 -64039201 + Tigger7 DNA MER2_type 2445 2487 0 259 300 14 29 chr9 53823426 53823566 -64039061 + L1MC4a LINE L1 6458 6595 -1213 622 284 71 0 chr9 53823587 53823770 -64038857 - L1ME1 LINE L1 -15 6151 5956 * 14035 178 27 49 chr9 53823760 53826951 -64035676 - L1P3 LINE L1 -2497 3964 832 1560 232 61 103 chr9 53826946 53827898 -64034729 + L1MC5 LINE L1 6567 7415 -393 * 2329 70 0 3 chr9 53828485 53828771 -64033856 + AluY SINE Alu 5 289 -22 237 196 0 0 chr9 53828835 53828886 -64033741 + (TA)n Simple_repeat Simple_repeat 2 52 0 2429 88 3 0 chr9 53828891 53829196 -64033431 + AluSq SINE Alu 1 306 -7 227 170 0 0 chr9 53829196 53829243 -64033384 - L1MC4 LINE L1 -1344 6698 6652 535 281 71 30 chr9 53829256 53829523 -64033104 + L1MC4 LINE L1 7634 7911 -131 219 69 0 0 chr9 53829739 53829768 -64032859 + (GA)n Simple_repeat Simple_repeat 1 29 0 2204 154 74 0 chr9 53830748 53831111 -64031516 + MLT1B LTR MaLR 1 390 0 267 272 53 34 chr9 53831488 53831734 -64030893 - L1ME4a LINE L1 -4 6117 5831 2465 148 18 10 chr9 53832264 53832664 -64029963 - L1PB3 LINE L1 0 6154 5752 864 143 0 8 chr9 53832703 53832836 -64029791 - FLAM_C SINE Alu 0 133 2 360 0 0 0 chr9 53832952 53832992 -64029635 + (CA)n Simple_repeat Simple_repeat 2 41 0 581 221 36 72 chr9 53833096 53833291 -64029336 - MIR SINE MIR -43 219 32 2101 133 7 3 chr9 53833305 53833613 -64029014 + AluSg SINE Alu 1 309 -1 390 210 193 0 chr9 53833636 53833755 -64028872 - MIR SINE MIR -1 261 120 2322 112 0 0 chr9 53833840 53834152 -64028475 - AluSx SINE Alu 0 312 1 389 228 80 0 chr9 53834167 53834289 -64028338 - L1ME1 LINE L1 -1 6163 6035 244 311 12 24 chr9 53834471 53834635 -64027992 + A-rich Low_complexity Low_complexity 2 163 0 1911 90 0 4 chr9 53834787 53835031 -64027596 + AluSx SINE Alu 46 288 -24 2014 203 42 81 chr9 53835350 53835967 -64026660 - LTR9 LTR ERV1 0 612 20 1979 113 42 7 chr9 53835973 53836256 -64026371 - AluSc SINE Alu -16 293 1 2020 144 0 3 chr9 53836337 53836636 -64025991 + AluSx SINE Alu 5 302 -10 386 276 65 43 chr9 53836702 53836934 -64025693 - L1P LINE L1 -2314 3832 3596 2187 93 4 0 chr9 53836958 53837262 -64025365 - AluSc SINE Alu 0 305 1 2408 84 0 0 chr9 53837272 53837568 -64025059 - AluSq SINE Alu -17 296 1 2032 148 3 3 chr9 53837699 53838010 -64024617 - AluSx SINE Alu -1 311 1 23 0 0 0 chr9 53838582 53838605 -64024022 + AT_rich Low_complexity Low_complexity 1 23 0 764 219 7 0 chr9 53838617 53838754 -64023873 + MER2 DNA MER2_type 1 138 -207 246 229 115 42 chr9 53839241 53839337 -64023290 - MIR SINE MIR -76 132 30 1064 198 43 138 chr9 53839533 53839839 -64022788 + L1ME2 LINE L1 5828 6161 -5 184 114 0 0 chr9 53839839 53839874 -64022753 + (TTTTA)n Simple_repeat Simple_repeat 2 90 0 1871 163 7 0 chr9 53839874 53840151 -64022476 - AluJb SINE Alu -29 283 5 1064 198 43 138 chr9 53840151 53840212 -64022415 + L1ME2 LINE L1 6159 6161 -5 2048 98 27 3 chr9 53840317 53840612 -64022015 + AluSq SINE Alu 1 302 -11 646 170 27 0 chr9 53841098 53841210 -64021417 - FLAM_A SINE Alu -10 132 18 706 271 48 11 chr9 53841235 53841423 -64021204 - MIR SINE MIR -66 196 2 1760 185 36 11 chr9 53841461 53841817 -64020810 + MLT1A1 LTR MaLR 1 365 0 392 220 202 0 chr9 53841830 53841974 -64020653 + MER5A DNA MER1_type 6 183 -6 328 274 238 6 chr9 53842165 53842329 -64020298 - MIR SINE MIR -33 229 28 349 221 179 35 chr9 53842658 53842803 -64019824 + MER117 DNA MER1_type 4 169 -28 1900 160 7 0 chr9 53843123 53843430 -64019197 - AluJo SINE Alu -3 309 1 1783 141 0 48 chr9 53843929 53844241 -64018386 + AluJb SINE Alu 5 301 -11 581 234 62 109 chr9 53844527 53844784 -64017843 - MLT1J LTR MaLR -33 478 234 2020 138 0 22 chr9 53845027 53845346 -64017281 + AluJb SINE Alu 1 312 0 260 318 66 50 chr9 53846874 53847072 -64015555 - MIR SINE MIR -56 206 6 2040 128 0 3 chr9 53847149 53847447 -64015180 + AluSq SINE Alu 1 297 -16 1028 241 217 35 chr9 53847526 53847966 -64014661 + MLT1G1 LTR MaLR 71 536 -6 983 113 0 0 chr9 53848113 53848246 -64014381 + AluSq/x SINE Alu 1 133 -180 2133 110 0 3 chr9 53848249 53848549 -64014078 + AluSq SINE Alu 1 299 -14 25 31 0 0 chr9 53848626 53848658 -64013969 + AT_rich Low_complexity Low_complexity 1 32 0 200 227 0 0 chr9 53848790 53848834 -64013793 + (TTAA)n Simple_repeat Simple_repeat 3 46 0 28 0 0 0 chr9 53848939 53848967 -64013660 + AT_rich Low_complexity Low_complexity 1 28 0 1687 185 13 0 chr9 53849071 53849373 -64013254 - AluSx SINE Alu -6 306 1 818 228 74 86 chr9 53849635 53849791 -64012836 + MER5C DNA MER1_type 5 161 -163 2186 102 30 0 chr9 53849791 53850095 -64012532 + AluSq SINE Alu 1 313 0 818 228 74 86 chr9 53850095 53850262 -64012365 + MER5C DNA MER1_type 161 324 0 182 373 22 40 chr9 53850398 53850626 -64012001 - L2 LINE L2 -186 3086 2863 453 265 118 33 chr9 53850993 53851162 -64011465 - MIR SINE MIR -8 254 62 2079 106 10 7 chr9 53851162 53851465 -64011162 + AluSq SINE Alu 1 304 -9 453 265 118 33 chr9 53851465 53851506 -64011121 - MIR SINE MIR -200 62 26 252 0 0 0 chr9 53851795 53851823 -64010804 + (A)n Simple_repeat Simple_repeat 1 28 0 2210 110 0 0 chr9 53851826 53852125 -64010502 + AluSg SINE Alu 1 299 -11 525 250 105 38 chr9 53852800 53853053 -64009574 - MLT1F LTR MaLR 0 567 303 185 95 0 71 chr9 53853091 53853133 -64009494 + (TC)n Simple_repeat Simple_repeat 1 39 0 606 255 14 71 chr9 53853225 53853437 -64009190 - MLT1F LTR MaLR -338 204 5 196 279 0 0 chr9 53856840 53856883 -64005744 + L2 LINE L2 3266 3308 -5 359 223 143 27 chr9 53856952 53857064 -64005563 - MIR SINE MIR -65 143 19 216 337 99 0 chr9 53857483 53857584 -64005043 - MIR SINE MIR -78 130 20 235 294 35 12 chr9 53859722 53859807 -64002820 - MIR3 SINE MIR -25 183 97 361 132 13 13 chr9 53862306 53862382 -64000245 + (CCA)n Simple_repeat Simple_repeat 2 77 0 255 31 0 0 chr9 53862389 53862421 -64000206 + (CCG)n Simple_repeat Simple_repeat 3 34 0 270 95 0 0 chr9 53862554 53862596 -64000031 + (CGG)n Simple_repeat Simple_repeat 2 43 0 180 77 0 0 chr9 53862651 53862677 -63999950 + (CCG)n Simple_repeat Simple_repeat 3 28 0 180 97 0 0 chr9 53862867 53862898 -63999729 + (CCG)n Simple_repeat Simple_repeat 1 31 0 787 165 0 0 chr9 53864858 53864979 -63997648 - FLAM_C SINE Alu -12 121 1 2311 88 0 3 chr9 53868789 53869097 -63993530 - AluY SINE Alu -4 307 1 450 256 141 58 chr9 53869315 53869457 -63993170 + L1ME4a LINE L1 5729 5858 -263 1983 122 7 3 chr9 53869457 53869751 -63992876 + AluSc SINE Alu 1 295 -14 450 256 141 58 chr9 53869751 53869971 -63992656 + L1ME4a LINE L1 5858 6121 0 2273 95 3 0 chr9 53870035 53870339 -63992288 - AluSx SINE Alu -6 306 2 1288 153 25 33 chr9 53870593 53870834 -63991793 - MLT2B3 LTR ERVL -315 239 1 494 250 0 17 chr9 53870843 53870963 -63991664 + MER5A DNA MER1_type 7 124 -65 1225 125 0 5 chr9 53871557 53871741 -63990886 + AluSq SINE Alu 1 183 -130 2054 119 3 0 chr9 53871881 53872220 -63990407 - AluSp SINE Alu 0 340 1 822 226 22 11 chr9 53872369 53872550 -63990077 - MER5A DNA MER1_type 0 189 7 1035 196 15 29 chr9 53872559 53872763 -63989864 + MLT2B3 LTR ERVL 1 201 -353 1030 251 80 20 chr9 53872773 53873072 -63989555 + MLT1H LTR MaLR 1 317 -232 414 134 0 0 chr9 53873328 53873395 -63989232 + (TTCC)n Simple_repeat Simple_repeat 1 67 0 2046 119 0 3 chr9 53873395 53873689 -63988938 - AluSx SINE Alu -19 293 1 1821 134 25 0 chr9 53874081 53874381 -63988246 - AluSx SINE Alu 0 307 1 1437 218 124 11 chr9 53874449 53875085 -63987542 + LTR50 LTR ERVL 1 787 -8 1506 127 0 0 chr9 53875407 53875628 -63986999 + AluSg/x SINE Alu 88 308 -4 2055 137 41 35 chr9 53875914 53876187 -63986440 - MER2 DNA MER2_type 0 345 68 556 164 0 29 chr9 53876187 53876291 -63986336 - L1PB4 LINE L1 -3 6153 6053 2055 137 41 35 chr9 53876291 53876359 -63986268 - MER2 DNA MER2_type -277 68 2 671 266 97 9 chr9 53876453 53876679 -63985948 - MIR SINE MIR -1 261 16 210 385 0 0 chr9 53876986 53877064 -63985563 + L2 LINE L2 3186 3263 -9 346 268 44 16 chr9 53877198 53877319 -63985308 - MIR SINE MIR -86 122 5 214 292 108 31 chr9 53877262 53877392 -63985235 + MIR SINE MIR 34 173 -89 * 2374 64 0 6 chr9 53877507 53877818 -63984809 - AluY SINE Alu 0 311 3 2271 87 3 0 chr9 53878075 53878387 -63984240 + AluSp SINE Alu 1 313 0 2134 100 0 3 chr9 53878511 53878811 -63983816 + AluSq SINE Alu 1 299 -14 189 74 0 0 chr9 53878884 53878911 -63983716 + (TC)n Simple_repeat Simple_repeat 1 27 0 2140 87 0 3 chr9 53879118 53879407 -63983220 - AluSc SINE Alu -17 292 5 351 0 0 0 chr9 53879566 53879605 -63983022 + (TG)n Simple_repeat Simple_repeat 2 40 0 511 276 22 43 chr9 53880027 53880212 -63982415 - MIR SINE MIR -77 185 5 210 247 110 0 chr9 53880221 53880294 -63982333 + MIR SINE MIR 97 177 -85 198 0 0 0 chr9 53881050 53881072 -63981555 + (T)n Simple_repeat Simple_repeat 1 22 0 190 366 59 10 chr9 53881083 53881184 -63981443 + MIR SINE MIR 33 138 -70 2052 105 0 0 chr9 53881866 53882192 -63980435 + AluSc SINE Alu 3 328 0 246 111 0 0 chr9 53883041 53883086 -63979541 + LTR66 LTR ERVL 394 438 -172 433 233 47 0 chr9 53883089 53883175 -63979452 - L1MC4 LINE L1 -1339 6703 6614 1990 135 0 10 chr9 53883210 53883522 -63979105 + AluSx SINE Alu 1 309 -3 1307 186 21 8 chr9 53883577 53883814 -63978813 - MLT1D LTR MaLR -8 497 258 2142 112 0 10 chr9 53883845 53884148 -63978479 - AluSg SINE Alu -10 300 1 237 233 291 0 chr9 53884177 53884263 -63978364 + MER34 LTR ERV1 1 111 -431 * 1477 192 59 78 chr9 53884236 53884561 -63978066 + MER39 LTR ERV1 243 573 -134 1775 133 29 0 chr9 53884561 53884840 -63977787 - AluSp SINE Alu 0 313 27 2495 64 0 0 chr9 53884840 53885151 -63977476 - AluY SINE Alu 0 311 1 1477 192 59 78 chr9 53885151 53885298 -63977329 + MER39 LTR ERV1 571 707 0 706 231 70 38 chr9 53885305 53885491 -63977136 - MLT1D LTR MaLR -313 192 1 1956 112 3 20 chr9 53885815 53886111 -63976516 + AluSx SINE Alu 1 291 -21 452 199 30 38 chr9 53886115 53886246 -63976381 - L1MC/D LINE L1 -749 5417 5305 1287 156 25 131 chr9 53886260 53886580 -63976047 - AluJo SINE Alu -15 287 2 213 121 0 0 chr9 53886673 53886706 -63975921 + (TA)n Simple_repeat Simple_repeat 2 34 0 2013 97 7 0 chr9 53886706 53887015 -63975612 - AluSp SINE Alu 0 313 3 219 284 84 0 chr9 53887804 53887899 -63974728 - MIR SINE MIR -75 133 31 180 97 0 0 chr9 53888472 53888503 -63974124 + (TTTTG)n Simple_repeat Simple_repeat 3 33 0 180 355 26 0 chr9 53888947 53889023 -63973604 + MIR SINE MIR 57 134 -128 1690 174 3 3 chr9 53889054 53889347 -63973280 - AluJb SINE Alu -19 293 1 649 279 20 15 chr9 53889363 53889564 -63973063 - LTR33 LTR ERVL -301 220 19 1966 111 7 4 chr9 53889655 53889977 -63972650 + AluSq SINE Alu 3 325 0 2187 125 3 0 chr9 53890389 53890693 -63971934 - AluSp SINE Alu -8 305 1 422 226 103 92 chr9 53891070 53891418 -63971209 - MLT1I LTR MaLR 0 409 92 2127 102 58 0 chr9 53891556 53891849 -63970778 + AluY SINE Alu 1 310 -1 693 167 0 9 chr9 53892086 53892194 -63970433 - FRAM SINE Alu -10 166 60 288 197 49 0 chr9 53892197 53892258 -63970369 + MIR SINE MIR 120 183 -79 2284 95 7 3 chr9 53892386 53892690 -63969937 + AluSx SINE Alu 1 305 -7 846 307 78 48 chr9 53892761 53893223 -63969404 - L2 LINE L2 -491 2823 2348 3991 52 6 0 chr9 53893223 53893689 -63968938 + L1PA7 LINE L1 5680 6148 -6 316 195 35 62 chr9 53893698 53893811 -63968816 - L1M4 LINE L1 -3850 2296 2187 1940 139 0 4 chr9 53894444 53894724 -63967903 + AluSx SINE Alu 1 279 -33 204 390 10 0 chr9 53894750 53894850 -63967777 + L2 LINE L2 1100 1200 -2114 4551 127 6 2 chr9 53894868 53895500 -63967127 - MER41B LTR ERV1 0 635 1 425 325 73 39 chr9 53895563 53895944 -63966683 + L2 LINE L2 1326 1719 -1595 187 388 0 0 chr9 53896042 53896127 -63966500 + L2 LINE L2 1990 2074 -1240 997 145 21 0 chr9 53896209 53896354 -63966273 + FRAM SINE Alu 1 144 -32 354 373 28 20 chr9 53896383 53896635 -63965992 + L2 LINE L2 2166 2419 -895 339 357 16 8 chr9 53896664 53896793 -63965834 + L2 LINE L2 3143 3272 0 275 347 114 11 chr9 53896794 53896878 -63965749 + L2 LINE L2 2467 2541 -773 2504 62 3 0 chr9 53896878 53897187 -63965440 - AluY SINE Alu -1 310 1 275 347 114 11 chr9 53897187 53897278 -63965349 + L2 LINE L2 2541 2660 -654 333 243 212 79 chr9 53897282 53897702 -63964925 + MLT1J LTR MaLR 5 480 -31 202 311 14 14 chr9 53898149 53898223 -63964404 + GA-rich Low_complexity Low_complexity 2 75 0 205 264 0 38 chr9 53898384 53898437 -63964190 - L2 LINE L2 -4 3268 3218 2259 108 20 0 chr9 53899099 53899405 -63963222 - AluSp SINE Alu -1 312 1 490 299 83 39 chr9 53899876 53900080 -63962547 - MIR SINE MIR -1 261 49 2249 90 13 7 chr9 53900087 53900388 -63962239 - AluSp SINE Alu -10 303 1 1080 138 36 15 chr9 53900403 53900599 -63962028 - AluSg/x SINE Alu -12 298 99 2081 144 0 0 chr9 53900674 53901148 -63961479 + AluSx SINE Alu 1 474 0 324 135 39 0 chr9 53901155 53901207 -63961420 - L1MC1 LINE L1 -13 6320 6267 2112 99 28 0 chr9 53901477 53901759 -63960868 - AluSc SINE Alu -19 290 1 21 0 0 0 chr9 53902103 53902124 -63960503 + AT_rich Low_complexity Low_complexity 1 21 0 257 211 49 8 chr9 53902275 53902398 -63960229 + (TA)n Simple_repeat Simple_repeat 1 128 0 213 238 0 0 chr9 53902594 53902636 -63959991 + GA-rich Low_complexity Low_complexity 2 43 0 337 271 81 19 chr9 53902678 53902833 -63959794 + MIR SINE MIR 6 171 -77 276 259 336 0 chr9 53903048 53903164 -63959463 - MER5A DNA MER1_type -1 188 34 428 316 149 10 chr9 53903806 53904094 -63958533 - L2 LINE L2 -3 3310 2983 300 23 23 0 chr9 53904645 53904689 -63957938 - Tigger2 DNA MER2_type -187 2531 2487 1595 171 7 18 chr9 53904716 53904991 -63957636 - AluJo SINE Alu -40 272 1 1909 159 0 0 chr9 53905059 53905365 -63957262 - AluSx SINE Alu 0 306 1 4149 155 20 28 chr9 53905386 53906090 -63956537 - Tigger2 DNA MER2_type -1961 757 58 2211 99 0 63 chr9 53906090 53906424 -63956203 + AluSq SINE Alu 1 313 0 4149 155 20 28 chr9 53906424 53906481 -63956146 - Tigger2 DNA MER2_type -2660 58 2 998 173 6 6 chr9 53906504 53906672 -63955955 + Tigger2 DNA MER2_type 2539 2706 -12 1040 244 38 55 chr9 53906673 53907018 -63955609 + L1M4 LINE L1 4415 4764 -1382 2322 95 3 0 chr9 53907018 53907312 -63955315 + AluSc SINE Alu 1 295 -14 1040 244 38 55 chr9 53907312 53907324 -63955303 + L1M4 LINE L1 4764 4775 -1371 2163 103 0 30 chr9 53907324 53907624 -63955003 + AluSg SINE Alu 1 291 -19 1040 244 38 55 chr9 53907624 53907812 -63954815 + L1M4 LINE L1 4775 4925 -1221 2049 121 21 0 chr9 53907948 53908228 -63954399 - AluSx SINE Alu -16 296 11 1039 181 5 5 chr9 53908259 53908447 -63954180 + MLT1D LTR MaLR 318 505 0 2392 156 82 57 chr9 53908449 53908792 -63953835 + LTR48 LTR ERV1 1 363 -424 2076 138 0 0 chr9 53908792 53909089 -63953538 - AluJb SINE Alu -15 297 1 2392 156 82 57 chr9 53909089 53909285 -63953342 + LTR48 LTR ERV1 363 553 -234 1646 95 0 5 chr9 53909276 53909498 -63953129 - THE1B LTR MaLR -143 221 1 * 207 0 0 0 chr9 53909837 53909860 -63952767 + (TA)n Simple_repeat Simple_repeat 1 23 0 2164 117 3 22 chr9 53909965 53910282 -63952345 - AluSq SINE Alu -2 311 1 2641 164 33 44 chr9 53910770 53910893 -63951734 - L1M2 LINE L1 -553 5738 5615 2231 88 0 7 chr9 53910893 53911205 -63951422 - AluSx SINE Alu 0 314 5 2641 164 33 44 chr9 53911205 53911691 -63950936 - L1M2 LINE L1 -676 5615 5134 2008 120 24 51 chr9 53912002 53912174 -63950453 - L1PB1 LINE L1 -14 6137 5977 2228 112 10 0 chr9 53912174 53912477 -63950150 - AluSc SINE Alu -3 306 1 2008 120 24 51 chr9 53912477 53912637 -63949990 - L1PB1 LINE L1 -174 5977 5814 1405 176 22 11 chr9 53912639 53912917 -63949710 - L1M2 LINE L1 -1022 5124 4844 2348 88 7 0 chr9 53912977 53913283 -63949344 - AluY SINE Alu -2 309 2 211 215 138 0 chr9 53913284 53913349 -63949278 - MER5C DNA MER1_type -215 109 36 1036 256 22 30 chr9 53913626 53913895 -63948732 - LTR16C LTR ERVL -1 490 224 488 169 0 12 chr9 53914218 53914301 -63948326 + AluJ/FRAM SINE Alu 226 307 -5 861 198 112 50 chr9 53914327 53914652 -63947975 + LTR48 LTR ERV1 229 527 -68 2200 102 0 7 chr9 53914652 53914960 -63947667 - AluSx SINE Alu 0 306 1 861 198 112 50 chr9 53914960 53915018 -63947609 + LTR48 LTR ERV1 527 580 -15 180 0 0 0 chr9 53915428 53915448 -63947179 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 252 239 92 39 chr9 53917969 53918099 -63944528 + L1MC4a LINE L1 5710 5846 -275 608 291 107 0 chr9 53918387 53918621 -63944006 + MIR SINE MIR 2 260 -2 285 117 0 50 chr9 53918889 53918949 -63943678 - AluS SINE Alu -244 57 1 510 167 33 58 chr9 53918967 53919087 -63943540 - AluJo SINE Alu -175 137 21 23 33 0 0 chr9 53919102 53919132 -63943495 + AT_rich Low_complexity Low_complexity 1 30 0 1653 157 144 16 chr9 53919227 53919540 -63943087 + MSTA LTR MaLR 1 353 -75 18935 159 19 7 chr9 53919541 53919614 -63943013 + L1P4 LINE L1 2086 2157 -4011 1996 154 0 0 chr9 53919614 53919913 -63942714 + AluSx SINE Alu 1 299 -13 18935 159 19 7 chr9 53919913 53923197 -63939430 + L1P4 LINE L1 2157 5474 -694 791 206 12 24 chr9 53923219 53923389 -63939238 - AluY SINE Alu -25 286 119 2463 153 71 100 chr9 53923501 53924145 -63938482 + LTR8A LTR ERV1 12 673 -54 305 184 0 0 chr9 53924391 53924440 -63938187 + LTR8A LTR ERV1 679 727 0 545 160 64 24 chr9 53924622 53924747 -63937880 - L1M4 LINE L1 -3558 2588 2459 225 139 0 0 chr9 53924925 53924968 -63937659 + (TG)n Simple_repeat Simple_repeat 2 44 0 229 294 79 0 chr9 53925209 53925335 -63937292 + L1MC4a LINE L1 5917 6052 -1756 2084 137 0 0 chr9 53925356 53925656 -63936971 - AluSx SINE Alu -1 311 12 465 248 0 23 chr9 53925678 53925811 -63936816 - L1MB2 LINE L1 -5 6166 6037 233 29 0 29 chr9 53926166 53926201 -63936426 + (GTTTG)n Simple_repeat Simple_repeat 2 35 0 2053 84 44 0 chr9 53926205 53926480 -63936147 - AluSp SINE Alu -26 287 1 2496 76 0 0 chr9 53926910 53927212 -63935415 - AluY SINE Alu -9 302 1 1431 81 0 0 chr9 53927389 53927563 -63935064 + AluSx SINE Alu 1 174 -138 683 204 267 0 chr9 53927660 53927832 -63934795 - MER20 DNA MER1_type 0 219 2 1102 204 61 38 chr9 53927858 53928168 -63934459 - MSTD LTR MaLR 0 396 44 1975 162 0 9 chr9 53928174 53928489 -63934138 - AluSx SINE Alu 0 312 1 2216 102 0 10 chr9 53929147 53929450 -63933177 - AluSq SINE Alu -13 300 1 540 318 52 23 chr9 53929530 53929876 -63932751 + L1ME LINE L1 5310 5665 -456 426 281 67 18 chr9 53929876 53930040 -63932587 - MIR SINE MIR -14 248 77 316 272 98 33 chr9 53930064 53930248 -63932379 + L1ME LINE L1 5647 5842 -279 2019 151 3 0 chr9 53930290 53930588 -63932039 - AluSx SINE Alu -13 299 1 207 0 0 0 chr9 53931103 53931126 -63931501 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 2078 121 4 0 chr9 53931128 53931409 -63931218 - AluSx SINE Alu -30 282 1 340 132 184 26 chr9 53931430 53931506 -63931121 - L2 LINE L2 -32 3281 3194 1048 256 48 63 chr9 53932833 53933045 -63929582 + LTR16A LTR ERVL 57 262 -188 5983 46 1 0 chr9 53933045 53933725 -63928902 - L1PA6 LINE L1 0 6154 5474 1048 256 48 63 chr9 53933725 53933906 -63928721 + LTR16A LTR ERVL 262 444 -6 287 85 21 0 chr9 53934259 53934306 -63928321 + (TTTC)n Simple_repeat Simple_repeat 3 50 0 2049 131 3 0 chr9 53934308 53934599 -63928028 - AluSx SINE Alu -10 302 11 1922 117 36 0 chr9 53934620 53934917 -63927710 - AluSx SINE Alu 0 307 1 2252 114 0 0 chr9 53934921 53935219 -63927408 - AluSg SINE Alu -12 298 1 2452 73 0 3 chr9 53935614 53935916 -63926711 - AluY SINE Alu -10 301 1 854 158 0 0 chr9 53936670 53936803 -63925824 - FLAM_C SINE Alu -10 133 1 1852 172 3 0 chr9 53937123 53937426 -63925201 + AluJb SINE Alu 1 304 -8 237 303 118 50 chr9 53937695 53937814 -63924813 - L2 LINE L2 -5 3267 3141 264 211 13 13 chr9 53938041 53938117 -63924510 - L1ME2 LINE L1 -8 6156 6081 1292 196 30 0 chr9 53939750 53940020 -63922607 + L1M4 LINE L1 4890 5167 -979 709 178 7 34 chr9 53940020 53940166 -63922461 + FRAM SINE Alu 31 172 -4 2065 143 0 7 chr9 53940198 53940506 -63922121 - AluSx SINE Alu -6 306 1 265 250 19 19 chr9 53941028 53941132 -63921495 + L1MB3 LINE L1 4266 4369 -1777 493 245 7 14 chr9 53941140 53941283 -63921344 + L1MCa LINE L1 1122 1263 -5163 964 160 20 114 chr9 53941287 53941380 -63921247 + L1MCa LINE L1 2180 2280 -4148 623 180 54 9 chr9 53941380 53941491 -63921136 + FLAM_A SINE Alu 2 117 -16 964 160 20 114 chr9 53941491 53941747 -63920880 + L1MCa LINE L1 2280 2496 -3932 2187 113 3 0 chr9 53941748 53942041 -63920586 + AluSx SINE Alu 1 294 -18 255 230 64 26 chr9 53942063 53942177 -63920450 + L1MCa LINE L1 2508 2600 -3826 346 140 35 0 chr9 53942199 53942256 -63920371 + Tigger4(Zombi) DNA MER2_type 32 90 -2641 * 5499 114 15 36 chr9 53942255 53943140 -63919487 + Tigger4(Zombi) DNA MER2_type 1865 2730 -1 1612 242 31 0 chr9 53943140 53943553 -63919074 + L1MCa LINE L1 2615 3040 -3386 4485 153 18 31 chr9 53943563 53944394 -63918233 + L1MA6 LINE L1 5352 6171 -129 1068 202 17 8 chr9 53944524 53944762 -63917865 + L1MB3 LINE L1 4966 5205 -941 2549 278 45 36 chr9 53944773 53945582 -63917045 + L1PA15 LINE L1 1 816 -5971 16273 207 38 22 chr9 53945582 53946035 -63916592 + L1PA15 LINE L1 1321 1765 -5051 2173 119 0 3 chr9 53946035 53946329 -63916298 - AluSx SINE Alu -19 293 1 16273 207 38 22 chr9 53946329 53948082 -63914545 + L1PA15 LINE L1 1765 3488 -3328 2020 146 0 16 chr9 53948082 53948397 -63914230 + AluJb SINE Alu 1 310 -2 16273 207 38 22 chr9 53948397 53951354 -63911273 + L1PA15 LINE L1 3488 6597 -219 2342 155 82 15 chr9 53951354 53951754 -63910873 - MSTA LTR MaLR 0 428 2 16273 207 38 22 chr9 53951754 53951978 -63910649 + L1PA15 LINE L1 6597 6816 0 4318 163 49 32 chr9 53951977 53952045 -63910582 + L1MB3 LINE L1 5188 5253 -930 * 276 77 0 0 chr9 53952045 53952084 -63910543 + (TG)n Simple_repeat Simple_repeat 2 40 0 4318 163 49 32 chr9 53952084 53952944 -63909683 + L1MB3 LINE L1 5253 6141 -42 1354 173 158 78 chr9 53952931 53952945 -63909682 + L1MCa LINE L1 1816 1827 -4599 * 2190 117 0 10 chr9 53952945 53953252 -63909375 + AluSc SINE Alu 1 304 -5 1354 173 158 78 chr9 53953252 53953543 -63909084 + L1MCa LINE L1 1827 2093 -4333 1819 160 34 3 chr9 53953543 53953836 -63908791 - AluSx SINE Alu -10 302 1 1354 173 158 78 chr9 53953836 53954066 -63908561 + L1MCa LINE L1 2093 2395 -4031 1839 202 112 45 chr9 53954082 53954241 -63908386 - MER21B LTR ERV1 -11 852 705 2434 72 0 0 chr9 53954241 53954533 -63908094 + AluSc SINE Alu 1 292 -17 1839 202 112 45 chr9 53954533 53954818 -63907809 - MER21B LTR ERV1 -158 705 378 251 245 19 0 chr9 53954820 53954873 -63907754 - MER2 DNA MER2_type -282 63 10 829 169 5 68 chr9 53954883 53955041 -63907586 + L1MB7 LINE L1 3784 3928 -2218 2205 125 0 0 chr9 53955041 53955344 -63907283 - AluSx SINE Alu -9 303 1 829 169 5 68 chr9 53955344 53955392 -63907235 + L1MB7 LINE L1 3928 3977 -2169 825 200 15 40 chr9 53955411 53955611 -63907016 + L1ME2 LINE L1 5960 6154 -10 297 153 17 34 chr9 53955646 53955705 -63906922 + L1MC4 LINE L1 7829 7886 -156 1709 202 9 3 chr9 53955788 53956110 -63906517 - L1ME LINE L1 -363 5803 5480 1097 216 41 60 chr9 53956106 53956472 -63906155 + L1ME1 LINE L1 5803 6161 -5 * 256 283 94 19 chr9 53957152 53957258 -63905369 + MER5A DNA MER1_type 54 167 -22 2188 129 0 0 chr9 53957287 53957596 -63905031 + AluSx SINE Alu 1 309 -3 1889 133 40 23 chr9 53958140 53958440 -63904187 - AluSg SINE Alu -5 305 1 878 194 6 12 chr9 53958615 53958775 -63903852 - FRAM SINE Alu -16 160 2 1885 191 119 41 chr9 53958808 53959372 -63903255 + L1MB7 LINE L1 4699 5306 -840 3263 157 20 30 chr9 53959372 53959983 -63902644 + L1MB7 LINE L1 5564 6168 -16 639 206 84 0 chr9 53960012 53960143 -63902484 + L1ME1 LINE L1 5629 5770 -396 1108 70 56 0 chr9 53960155 53960298 -63902329 + AluSq SINE Alu 4 154 -159 435 189 113 57 chr9 53960300 53960459 -63902168 + L1ME1 LINE L1 5998 6165 -1 21 36 0 0 chr9 53960832 53960860 -63901767 + AT_rich Low_complexity Low_complexity 1 28 0 331 246 107 70 chr9 53963227 53963414 -63899213 - MIR3 SINE MIR -11 197 4 833 139 118 0 chr9 53964526 53964670 -63897957 + FRAM SINE Alu 1 160 -16 2253 111 3 9 chr9 53964770 53965085 -63897542 + AluSp SINE Alu 1 313 0 2237 100 0 3 chr9 53965209 53965509 -63897118 + AluSq SINE Alu 1 299 -14 189 74 0 0 chr9 53965582 53965609 -63897018 + (TC)n Simple_repeat Simple_repeat 1 27 0 2244 87 0 3 chr9 53965816 53966105 -63896522 - AluSc SINE Alu -17 292 5 351 0 0 0 chr9 53966264 53966303 -63896324 + (TG)n Simple_repeat Simple_repeat 2 40 0 499 281 22 43 chr9 53966726 53966911 -63895716 - MIR SINE MIR -77 185 5 202 247 110 0 chr9 53966920 53966993 -63895634 + MIR SINE MIR 97 177 -85 198 0 0 0 chr9 53967749 53967771 -63894856 + (T)n Simple_repeat Simple_repeat 1 22 0 188 347 61 10 chr9 53967782 53967880 -63894747 + MIR SINE MIR 33 135 -73 1909 104 0 4 chr9 53968565 53968814 -63893813 + AluSc SINE Alu 3 250 -59 1967 100 7 21 chr9 53968917 53969208 -63893419 - AluSx SINE Alu -25 287 1 711 239 104 46 chr9 53969208 53969591 -63893036 + L1ME4a LINE L1 5691 6104 -17 4272 173 104 25 chr9 53969757 53970697 -63891930 + L1MD2 LINE L1 5327 6340 -19 219 244 39 64 chr9 53971055 53971133 -63891494 + L2 LINE L2 2990 3065 -248 713 243 219 10 chr9 53971193 53971494 -63891133 + LTR50 LTR ERVL 343 706 -89 2431 88 3 0 chr9 53972940 53973245 -63889382 + AluSp SINE Alu 1 306 -7 2235 125 0 0 chr9 53973695 53974006 -63888621 - AluSx SINE Alu -1 311 1 2252 114 0 0 chr9 53974010 53974308 -63888319 - AluSg SINE Alu -12 298 1 2421 80 0 3 chr9 53974705 53975007 -63887620 - AluY SINE Alu -10 301 1 2326 83 3 6 chr9 53975311 53975624 -63887003 + AluSx SINE Alu 1 312 0 23 33 0 0 chr9 53975931 53975961 -63886666 + AT_rich Low_complexity Low_complexity 1 30 0 453 276 117 35 chr9 53976868 53977125 -63885502 + MLT1H LTR MaLR 35 312 -237 2198 49 45 0 chr9 53977178 53977443 -63885184 - AluY SINE Alu -1 310 34 237 246 0 31 chr9 53977476 53977541 -63885086 + MLT1H LTR MaLR 487 549 0 399 243 162 0 chr9 53977542 53977653 -63884974 + L2 LINE L2 3185 3313 0 1373 254 12 71 chr9 53978150 53978571 -63884056 - MSTD LTR MaLR 0 396 1 1946 165 0 9 chr9 53978627 53978942 -63883685 + AluSx SINE Alu 1 312 0 1168 192 61 38 chr9 53978948 53979258 -63883369 + MSTD LTR MaLR 44 396 0 709 198 267 0 chr9 53979284 53979456 -63883171 + MER20 DNA MER1_type 2 219 0 1314 115 0 0 chr9 53979553 53979727 -63882900 - AluSx SINE Alu -138 174 1 540 318 52 23 chr9 53979807 53980153 -63882474 + L1ME4a LINE L1 5310 5665 -456 426 281 67 18 chr9 53980153 53980317 -63882310 - MIR SINE MIR -14 248 77 327 268 111 62 chr9 53980341 53980567 -63882060 + L1ME4a LINE L1 5647 5861 -260 2019 151 3 0 chr9 53980567 53980865 -63881762 - AluSx SINE Alu -13 299 1 327 268 111 62 chr9 53980865 53981090 -63881537 + L1ME4a LINE L1 5861 6120 -1 2350 116 0 0 chr9 53981540 53981850 -63880777 - AluSx SINE Alu -2 310 1 313 314 0 0 chr9 53982208 53982294 -63880333 + CT-rich Low_complexity Low_complexity 2 87 0 328 213 12 12 chr9 53982776 53982856 -63879771 - MER116 DNA Mariner 0 80 1 228 173 115 19 chr9 53982985 53983037 -63879590 + MER75 DNA T2_type 1 57 -457 * 260 133 22 0 chr9 53983013 53983058 -63879569 + MER75 DNA T2_type 469 514 0 190 305 85 0 chr9 53983161 53983220 -63879407 - L2 LINE L2 -10 3262 3199 1748 229 58 81 chr9 53983269 53983656 -63878971 + MLT2B3 LTR ERVL 1 372 -182 2028 106 32 0 chr9 53983656 53983940 -63878687 - AluSq SINE Alu -20 293 1 1748 229 58 81 chr9 53983940 53984119 -63878508 + MLT2B3 LTR ERVL 372 554 0 207 0 0 0 chr9 53984879 53984902 -63877725 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 2078 121 4 0 chr9 53984904 53985185 -63877442 - AluSx SINE Alu -30 282 1 340 132 184 26 chr9 53985206 53985282 -63877345 - L2 LINE L2 -32 3281 3194 1048 256 48 63 chr9 53986609 53986821 -63875806 + LTR16A LTR ERVL 57 262 -188 5983 46 1 0 chr9 53986821 53987501 -63875126 - L1PA6 LINE L1 0 6154 5474 1048 256 48 63 chr9 53987501 53987682 -63874945 + LTR16A LTR ERVL 262 444 -6 666 25 0 0 chr9 53988025 53988105 -63874522 + (TTTC)n Simple_repeat Simple_repeat 2 81 0 1976 119 4 0 chr9 53988109 53988378 -63874249 - AluSx SINE Alu -32 280 11 1627 107 44 0 chr9 53988399 53988647 -63873980 - AluSx SINE Alu 0 307 50 2277 116 0 0 chr9 53989149 53989460 -63873167 - AluSx SINE Alu -1 311 1 498 315 101 68 chr9 53989678 53989986 -63872641 - L2 LINE L2 0 3272 2955 201 380 0 0 chr9 53990016 53990108 -63872519 - L2 LINE L2 -595 2719 2628 2278 100 0 3 chr9 53990135 53990436 -63872191 + AluSc SINE Alu 1 300 -9 675 252 59 40 chr9 53990447 53990868 -63871759 - L1 LINE L1 -2963 3183 2755 602 149 53 0 chr9 53990872 53990986 -63871641 - L1MA6 LINE L1 0 6300 6181 250 193 18 0 chr9 53991141 53991198 -63871429 + Alu SINE Alu 243 300 0 295 265 48 12 chr9 53991299 53991382 -63871245 - MLT1J LTR MaLR -2 509 424 263 158 0 18 chr9 53991388 53991445 -63871182 + GA-rich Low_complexity Low_complexity 3 58 0 518 265 89 92 chr9 53991454 53991790 -63870837 - MLT1J LTR MaLR -106 405 71 228 196 0 0 chr9 53991868 53991914 -63870713 + L1MC4 LINE L1 6658 6703 -1339 453 275 0 0 chr9 53991914 53991968 -63870659 + (TA)n Simple_repeat Simple_repeat 1 54 -113 239 114 45 0 chr9 53991968 53992012 -63870615 - LTR66 LTR ERVL -171 439 394 453 275 0 0 chr9 53992012 53992034 -63870593 + (TA)n Simple_repeat Simple_repeat 53 167 0 282 306 99 0 chr9 53992093 53992214 -63870413 - Charlie8 DNA MER1_type -2152 265 133 476 269 114 13 chr9 53992233 53992382 -63870245 + L2 LINE L2 2862 3025 -288 2218 124 0 0 chr9 53992437 53992743 -63869884 - AluSx SINE Alu -6 306 1 23 68 0 0 chr9 53993455 53993499 -63869128 + AT_rich Low_complexity Low_complexity 1 44 0 2287 117 0 0 chr9 53994239 53994548 -63868079 + AluSc SINE Alu 1 309 0 281 322 13 60 chr9 53994574 53994723 -63867904 - L3 LINE CR1 -2 1575 1434 1065 205 0 0 chr9 53994744 53994939 -63867688 - AluJb SINE Alu 0 312 118 722 207 0 14 chr9 53994964 53995109 -63867518 - FLAM_C SINE Alu 0 143 1 425 331 55 0 chr9 53995364 53995491 -63867136 - L2 LINE L2 -12 3260 3127 316 217 229 0 chr9 53995548 53995631 -63866996 + MIR SINE MIR 46 147 -115 382 326 160 39 chr9 53995825 53996290 -63866337 - L2 LINE L2 -659 2655 2115 2343 95 3 0 chr9 53996290 53996595 -63866032 + AluSc SINE Alu 1 306 -3 382 326 160 39 chr9 53996595 53996666 -63865961 - L2 LINE L2 -1199 2115 2054 311 296 0 0 chr9 53996878 53996966 -63865661 - L1M4 LINE L1 -1304 4842 4755 414 276 0 55 chr9 53997203 53997330 -63865297 + MER5A DNA MER1_type 17 136 -53 387 0 0 0 chr9 53997430 53997473 -63865154 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2125 102 3 3 chr9 53997476 53997761 -63864866 - AluSx SINE Alu -27 285 1 2051 86 0 11 chr9 53997810 53998077 -63864550 + AluSc SINE Alu 33 296 -13 610 279 92 13 chr9 53998357 53998567 -63864060 + MIR SINE MIR 14 245 -17 1469 179 4 4 chr9 53998567 53998813 -63863814 + AluJb SINE Alu 1 246 -66 610 279 92 13 chr9 53998813 53998831 -63863796 + MIR SINE MIR 245 260 -2 1357 153 57 4 chr9 53998835 53999097 -63863530 - L1MC1 LINE L1 -1 6332 6057 1056 133 41 31 chr9 53999181 53999385 -63863242 - L1MC1 LINE L1 -173 5998 5880 233 240 179 22 chr9 53999414 53999593 -63863034 - L1MC1 LINE L1 -1929 5879 5673 187 56 83 0 chr9 53999623 53999659 -63862968 + T-rich Low_complexity Low_complexity 2 40 0 1014 182 5 31 chr9 53999689 53999881 -63862746 - AluJo SINE Alu -125 187 1 490 221 106 40 chr9 53999881 54000089 -63862538 - L1MC1 LINE L1 -484 5637 5417 235 205 13 51 chr9 54000195 54000273 -63862354 + CT-rich Low_complexity Low_complexity 2 76 0 2211 107 0 3 chr9 54001761 54002060 -63860567 + AluSx SINE Alu 1 298 -14 2079 134 3 0 chr9 54003236 54003541 -63859086 - AluSx SINE Alu -6 306 1 23 0 0 0 chr9 54003812 54003835 -63858792 + AT_rich Low_complexity Low_complexity 1 23 0 234 172 0 0 chr9 54004160 54004224 -63858403 - L1MC4 LINE L1 -1339 6703 6640 1989 154 20 0 chr9 54004233 54004539 -63858088 - AluJb SINE Alu 0 312 1 2288 90 0 10 chr9 54004551 54004850 -63857777 - AluSc SINE Alu -9 300 5 236 197 74 91 chr9 54005145 54005233 -63857394 + MIR3 SINE MIR 65 155 -53 1335 199 81 78 chr9 54005702 54005796 -63856831 + MSTB2 LTR MaLR 1 93 -364 2200 102 17 0 chr9 54005796 54006089 -63856538 + AluSg SINE Alu 1 298 -12 1335 199 81 78 chr9 54006089 54006269 -63856358 + MSTB2 LTR MaLR 93 271 -186 1531 153 128 0 chr9 54006269 54006565 -63856062 - AluSx SINE Alu 0 328 1 1335 199 81 78 chr9 54006565 54006735 -63855892 + MSTB2 LTR MaLR 271 457 0 1815 152 35 0 chr9 54006830 54007120 -63855507 + AluSx SINE Alu 3 302 -10 2311 113 0 3 chr9 54007228 54007539 -63855088 + AluSg SINE Alu 1 310 0 2241 132 0 0 chr9 54007664 54007974 -63854653 + AluSx SINE Alu 3 312 0 220 184 0 0 chr9 54008320 54008358 -63854269 + (ATG)n Simple_repeat Simple_repeat 1 38 0 1770 217 58 41 chr9 54008359 54008890 -63853737 + LTR55 LTR ERV 1 540 -8 1412 176 57 14 chr9 54008922 54009201 -63853426 + AluJb SINE Alu 5 295 -17 1813 167 27 55 chr9 54009336 54009737 -63852890 - MLT1B LTR MaLR 0 390 1 438 302 45 58 chr9 54009778 54009826 -63852801 - L1MC4a LINE L1 -1899 5909 5862 1885 147 49 96 chr9 54009826 54009914 -63852713 + MSTC LTR MaLR 1 92 -336 1883 152 10 3 chr9 54009914 54010211 -63852416 + AluJb SINE Alu 5 303 -9 1885 147 49 96 chr9 54010211 54010571 -63852056 + MSTC LTR MaLR 92 428 0 438 302 45 58 chr9 54010571 54010830 -63851797 - L1MC4a LINE L1 -1946 5862 5606 1991 137 58 28 chr9 54011197 54011561 -63851066 - THE1C LTR MaLR 0 375 1 225 300 0 14 chr9 54011833 54011903 -63850724 + L2 LINE L2 2988 3056 -257 1166 173 38 41 chr9 54013213 54013479 -63849148 - MER58B DNA MER1_type 0 341 77 2630 148 9 19 chr9 54013479 54013911 -63848716 + MSTA LTR MaLR 1 428 0 6752 133 16 57 chr9 54013911 54014148 -63848479 + MSTA-int LTR MaLR 1 246 -1405 1849 117 80 7 chr9 54014148 54014422 -63848205 + AluSx SINE Alu 2 295 -17 6752 133 16 57 chr9 54014422 54014674 -63847953 + MSTA-int LTR MaLR 246 507 -1144 2155 119 3 0 chr9 54014674 54014967 -63847660 + AluSp SINE Alu 1 294 -19 6752 133 16 57 chr9 54014967 54014980 -63847647 + MSTA-int LTR MaLR 507 519 -1132 1953 147 0 7 chr9 54014980 54015272 -63847355 + AluSq SINE Alu 1 290 -23 6752 133 16 57 chr9 54015272 54015948 -63846679 + MSTA-int LTR MaLR 519 1133 -518 21 57 0 0 chr9 54016025 54016060 -63846567 + AT_rich Low_complexity Low_complexity 1 35 0 509 198 155 9 chr9 54016110 54016226 -63846401 + FLAM_A SINE Alu 1 133 0 243 0 0 0 chr9 54018150 54018177 -63844450 + (TG)n Simple_repeat Simple_repeat 2 28 0 1423 144 0 0 chr9 54019074 54019276 -63843351 + AluSg/x SINE Alu 91 292 -20 279 54 0 0 chr9 54019289 54019326 -63843301 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 23 68 0 0 chr9 54019663 54019707 -63842920 + AT_rich Low_complexity Low_complexity 1 44 0 1886 236 60 40 chr9 54020039 54020620 -63842007 - MLT1E LTR MaLR 0 593 1 22 35 0 0 chr9 54020718 54020747 -63841880 + AT_rich Low_complexity Low_complexity 1 29 0 245 319 0 0 chr9 54020854 54020923 -63841704 + L2 LINE L2 3203 3271 -1 447 214 39 0 chr9 54021047 54021150 -63841477 - MIR SINE MIR 0 262 156 1043 164 0 0 chr9 54021230 54021395 -63841232 - FRAM SINE Alu -1 165 1 22 70 0 0 chr9 54025012 54025055 -63837572 + AT_rich Low_complexity Low_complexity 1 43 0 4784 160 7 11 chr9 54025707 54026518 -63836109 - L1MA9 LINE L1 -231 6081 5277 2131 103 4 0 chr9 54026518 54026841 -63835786 - AluSq SINE Alu 0 324 1 4784 160 7 11 chr9 54026841 54026971 -63835656 - L1MA9 LINE L1 -1035 5277 5148 2214 120 0 0 chr9 54027411 54027712 -63834915 + AluSx SINE Alu 3 303 -9 673 283 40 20 chr9 54028074 54028343 -63834284 - MLT1F1 LTR MaLR -284 271 6 591 238 110 70 chr9 54028549 54028877 -63833750 + MLT1H1 LTR MaLR 1 341 -214 629 230 47 61 chr9 54028983 54029196 -63833431 + MER21A LTR ERV1 586 795 -136 492 142 0 75 chr9 54029217 54029323 -63833304 - L1MD1 LINE L1 -77 6165 6068 561 152 19 9 chr9 54029325 54029430 -63833197 - MER39 LTR ERV1 -601 106 1 2613 210 10 46 chr9 54029433 54029713 -63832914 - L1M4 LINE L1 -1566 4580 4291 2144 161 43 19 chr9 54029713 54030135 -63832492 - MSTB1 LTR MaLR 0 432 1 2613 210 10 46 chr9 54030135 54030578 -63832049 - L1M4 LINE L1 -1855 4291 3883 2812 194 26 66 chr9 54030636 54031545 -63831082 - MER21B LTR ERV1 -52 811 70 359 138 0 0 chr9 54031654 54031712 -63830915 - MER21A LTR ERV1 -861 70 13 197 165 58 10 chr9 54031714 54031817 -63830810 + (TA)n Simple_repeat Simple_repeat 1 108 0 297 265 20 10 chr9 54031817 54031919 -63830708 - L1M4 LINE L1 -2278 3868 3766 4087 187 53 53 chr9 54032062 54033725 -63828902 + L1MB7 LINE L1 4359 6021 -163 1657 175 0 7 chr9 54033725 54034022 -63828605 + AluJb SINE Alu 14 308 -4 4087 187 53 53 chr9 54034022 54034043 -63828584 + L1MB7 LINE L1 6021 6041 -143 2253 113 11 11 chr9 54034043 54034398 -63828229 + THE1A LTR MaLR 1 355 0 4087 187 53 53 chr9 54034398 54034533 -63828094 + L1MB7 LINE L1 6041 6184 0 301 299 37 37 chr9 54034561 54034695 -63827932 + L1ME4a LINE L1 5988 6121 0 1496 169 22 60 chr9 54035257 54035571 -63827056 + AluJb SINE Alu 1 302 -10 401 282 19 77 chr9 54035996 54036152 -63826475 - MIR SINE MIR -98 164 18 42 82 0 0 chr9 54036304 54036402 -63826225 + AT_rich Low_complexity Low_complexity 1 98 0 22 35 0 0 chr9 54036950 54036979 -63825648 + AT_rich Low_complexity Low_complexity 1 29 0 1448 192 90 0 chr9 54037546 54037812 -63824815 + AluJb SINE Alu 1 290 -22 12371 134 56 8 chr9 54037881 54039917 -63822710 - Tigger1 DNA MER2_type 0 2418 284 2438 154 15 0 chr9 54039917 54040314 -63822313 - MER57A LTR ERV1 0 403 1 1772 116 19 0 chr9 54040314 54040573 -63822054 - Tigger1 DNA MER2_type -2131 287 24 27 62 0 0 chr9 54042648 54042696 -63819931 + AT_rich Low_complexity Low_complexity 1 48 0 774 242 195 17 chr9 54043970 54044268 -63818359 + L2 LINE L2 938 1288 -2026 330 250 33 11 chr9 54044276 54044368 -63818259 + MER58B DNA MER1_type 29 122 -219 251 197 0 99 chr9 54044367 54044438 -63818189 + MER58B DNA MER1_type 263 326 -15 * 347 164 0 0 chr9 54044495 54044550 -63818077 - MER5A DNA MER1_type -1 188 134 4777 145 59 23 chr9 54044551 54044679 -63817948 + L1PB4 LINE L1 5203 5325 -831 2331 103 0 0 chr9 54044679 54044979 -63817648 + AluY SINE Alu 1 300 -11 4777 145 59 23 chr9 54044979 54045772 -63816855 + L1PB4 LINE L1 5325 6155 -1 506 227 168 0 chr9 54045781 54045900 -63816727 - MER5A DNA MER1_type -50 139 1 * 972 252 115 52 chr9 54045900 54045980 -63816647 + L2 LINE L2 1287 1358 -1956 3395 87 13 35 chr9 54045980 54046442 -63816185 + MLT2A2 LTR ERVL 1 452 -1 972 252 115 52 chr9 54046442 54046785 -63815842 + L2 LINE L2 1358 1739 -1575 2119 228 75 90 chr9 54046788 54047569 -63815058 + LTR41 LTR ERVL 1 770 -3 747 118 0 0 chr9 54047931 54048033 -63814594 - AluSg/x SINE Alu -9 303 202 1165 140 6 17 chr9 54048036 54048214 -63814413 + AluSx SINE Alu 11 186 -126 293 192 0 14 chr9 54048253 54048326 -63814301 - L1ME4a LINE L1 -5 6116 6045 1927 149 0 0 chr9 54048816 54049105 -63813522 - AluSx SINE Alu -23 289 1 1998 139 0 23 chr9 54049299 54049601 -63813026 + AluJo SINE Alu 5 299 -13 835 154 0 16 chr9 54050467 54050590 -63812037 + FLAM_C SINE Alu 5 125 -18 258 195 0 0 chr9 54051004 54051045 -63811582 - MER5A DNA MER1_type -1 188 148 401 155 0 0 chr9 54051045 54051103 -63811524 - MER1B DNA MER1_type 0 333 276 * 765 152 73 20 chr9 54051097 54051248 -63811379 - MER1B DNA MER1_type -82 215 57 376 230 0 0 chr9 54051256 54051330 -63811297 - MER5A DNA MER1_type -34 155 82 360 298 21 0 chr9 54051359 54051453 -63811174 + L2 LINE L2 1877 1972 -1342 320 180 0 0 chr9 54051519 54051569 -63811058 + MER57A LTR ERV1 295 344 -59 243 256 98 8 chr9 54051605 54051738 -63810889 + L1ME LINE L1 5762 5906 -258 25 51 0 0 chr9 54051766 54051805 -63810822 + AT_rich Low_complexity Low_complexity 1 39 0 1293 164 28 66 chr9 54052561 54052847 -63809780 + AluJo SINE Alu 7 281 -31 354 65 48 0 chr9 54052876 54052938 -63809689 + GA-rich Low_complexity Low_complexity 1 65 0 2080 145 0 7 chr9 54054253 54054563 -63808064 + AluSx SINE Alu 5 312 0 197 338 128 0 chr9 54055000 54055148 -63807479 + L2 LINE L2 978 1144 -2170 264 274 71 35 chr9 54055337 54055450 -63807177 + HAL1 LINE L1 340 456 -2051 301 250 0 40 chr9 54055556 54055656 -63806971 + HAL1 LINE L1 2114 2209 -298 360 0 0 0 chr9 54055845 54055885 -63806742 + (TA)n Simple_repeat Simple_repeat 1 40 0 27 49 0 0 chr9 54056016 54056057 -63806570 + AT_rich Low_complexity Low_complexity 1 41 0 220 194 0 0 chr9 54056732 54056768 -63805859 + (TATG)n Simple_repeat Simple_repeat 2 37 0 2300 110 0 0 chr9 54057208 54057518 -63805109 + AluSg SINE Alu 1 310 0 22 70 0 0 chr9 54057553 54057596 -63805031 + AT_rich Low_complexity Low_complexity 1 43 0 27 49 0 0 chr9 54057643 54057684 -63804943 + AT_rich Low_complexity Low_complexity 1 41 0 296 281 0 34 chr9 54061263 54061352 -63801275 - MIR SINE MIR -121 141 56 1855 158 20 7 chr9 54062158 54062456 -63800171 - AluSx SINE Alu -10 302 1 3757 159 37 55 chr9 54063338 54064062 -63798565 + L1MD1 LINE L1 5470 6180 -62 2239 123 0 0 chr9 54064062 54064362 -63798265 - AluSx SINE Alu -11 301 2 3757 159 37 55 chr9 54064362 54064424 -63798203 + L1MD1 LINE L1 6180 6242 0 1123 156 152 31 chr9 54064460 54064627 -63798000 - MER33 DNA MER1_type -2261 324 179 1607 183 71 49 chr9 54064627 54064993 -63797634 - MLT1A2 LTR MaLR 0 374 1 1123 156 152 31 chr9 54064993 54065114 -63797513 - MER33 DNA MER1_type -2406 179 1 887 229 54 21 chr9 54066073 54066153 -63796474 + MIR SINE MIR 10 86 -176 2034 135 0 3 chr9 54066153 54066449 -63796178 - AluSq SINE Alu -18 295 1 887 229 54 21 chr9 54066449 54066608 -63796019 + MIR SINE MIR 86 257 -5 1282 241 51 34 chr9 54067110 54067474 -63795153 + MLT1E LTR MaLR 52 474 -119 1693 150 8 0 chr9 54067474 54067741 -63794886 + AluSq SINE Alu 32 300 -13 1282 241 51 34 chr9 54067741 54067864 -63794763 + MLT1E LTR MaLR 474 593 0 757 312 25 35 chr9 54067905 54068190 -63794437 - MLT1K LTR MaLR -239 349 68 535 207 82 15 chr9 54068190 54068324 -63794303 + MLT1H LTR MaLR 3 145 -404 362 196 54 54 chr9 54068324 54068416 -63794211 - LTR16B LTR ERVL 0 464 373 414 125 0 0 chr9 54068440 54068496 -63794131 + AluS SINE Alu 8 63 -255 1856 126 34 0 chr9 54068496 54068765 -63793862 + AluSx SINE Alu 30 307 -5 662 307 198 10 chr9 54068794 54069087 -63793540 - LTR16B LTR ERVL -116 348 1 * 669 280 117 54 chr9 54069087 54069472 -63793155 + MLT1H LTR MaLR 141 549 0 406 223 266 14 chr9 54069705 54069844 -63792783 - MER5B DNA MER1_type -3 175 2 299 279 0 0 chr9 54070219 54070280 -63792347 + MIR SINE MIR 88 148 -60 2384 85 3 0 chr9 54070996 54071301 -63791326 - AluSq SINE Alu -7 306 1 234 0 0 0 chr9 54071839 54071865 -63790762 + (GA)n Simple_repeat Simple_repeat 1 26 0 582 297 9 44 chr9 54072460 54072624 -63790003 + MIR SINE MIR 32 187 -75 1228 191 92 68 chr9 54072624 54072960 -63789667 + MER2 DNA MER2_type 1 344 0 582 297 9 44 chr9 54072960 54073024 -63789603 + MIR SINE MIR 187 252 -10 1531 170 23 46 chr9 54073109 54073415 -63789212 - L1MB7 LINE L1 0 6184 5886 306 266 25 0 chr9 54073933 54074012 -63788615 - LTR33 LTR ERVL 0 521 441 275 211 19 0 chr9 54074356 54074408 -63788219 + Zaphod DNA AcHobo 3978 4030 -1 684 324 100 3 chr9 54074420 54074800 -63787827 - LTR33 LTR ERVL -103 418 2 2334 172 5 36 chr9 54074958 54075406 -63787221 + MER31B LTR ERV1 2 435 -31 525 301 112 23 chr9 54075703 54076141 -63786486 + L1MC/D LINE L1 5343 5819 -1989 397 239 11 0 chr9 54076149 54076241 -63786386 + L1PB4 LINE L1 6053 6145 -11 1839 129 37 27 chr9 54076385 54076679 -63785948 - AluSx SINE Alu -15 297 1 5057 163 25 41 chr9 54076686 54076701 -63785926 - L1MB4 LINE L1 0 6180 6166 402 21 0 0 chr9 54076701 54076748 -63785879 + (CA)n Simple_repeat Simple_repeat 2 48 0 5057 163 25 41 chr9 54076748 54077070 -63785557 - L1MB4 LINE L1 -14 6166 5840 2277 209 49 121 chr9 54077070 54077667 -63784960 - MLT2B3 LTR ERVL 0 554 1 5057 163 25 41 chr9 54077667 54078553 -63784074 - L1MB4 LINE L1 -340 5840 4961 586 204 0 0 chr9 54078576 54078679 -63783948 + MER58 DNA MER1_type 2318 2420 0 216 281 8 83 chr9 54078732 54078853 -63783774 - L2 LINE L2 -4 3309 3198 1742 148 0 44 chr9 54079478 54079776 -63782851 - AluJo SINE Alu -22 290 6 227 218 82 64 chr9 54079799 54079909 -63782718 - MLT1J LTR MaLR 0 511 400 252 258 72 21 chr9 54079939 54080036 -63782591 - MLT1J LTR MaLR -178 333 232 211 244 22 0 chr9 54080042 54080087 -63782540 - MER5A DNA MER1_type -20 169 124 258 286 165 8 chr9 54080192 54080325 -63782302 - MLT1J LTR MaLR -331 180 27 217 289 0 0 chr9 54080419 54080471 -63782156 - MER5A DNA MER1_type -10 179 128 2408 84 13 0 chr9 54080628 54080927 -63781700 - AluSx SINE Alu -9 303 1 1112 297 70 14 chr9 54080995 54081550 -63781077 + L1MC4 LINE L1 7457 8042 0 2266 105 3 7 chr9 54082975 54083281 -63779346 - AluSx SINE Alu -7 305 1 477 280 47 51 chr9 54085933 54086169 -63776458 + MER115 DNA AcHobo 1 235 -458 776 251 112 35 chr9 54086198 54086545 -63776082 + MER115 DNA AcHobo 303 676 -17 1260 142 4 67 chr9 54087779 54088032 -63774595 - MLT1B LTR MaLR 0 390 154 1216 188 62 12 chr9 54088037 54088277 -63774350 - AluJb SINE Alu -55 257 6 869 137 56 25 chr9 54088285 54088446 -63774181 - MLT1B LTR MaLR -217 173 8 255 366 12 0 chr9 54088454 54088536 -63774091 + MIR SINE MIR 7 89 -173 2250 102 3 0 chr9 54088930 54089224 -63773403 + AluSp SINE Alu 5 299 -14 2190 129 0 10 chr9 54089671 54089981 -63772646 - AluSx SINE Alu -5 307 1 492 164 238 0 chr9 54090297 54090419 -63772208 - L1ME1 LINE L1 -25 6141 5991 246 241 0 72 chr9 54090443 54090526 -63772101 - L1MC4 LINE L1 0 8042 7966 1535 319 53 92 chr9 54090535 54091691 -63770936 - L1MC4 LINE L1 -157 7885 6775 708 228 132 36 chr9 54092922 54093141 -63769486 + MIR SINE MIR 2 241 -21 816 279 159 51 chr9 54093542 54094227 -63768400 + L2 LINE L2 2489 3275 -38 1252 172 26 13 chr9 54094616 54094848 -63767779 - AluJo SINE Alu -77 235 1 2527 144 59 7 chr9 54095565 54095974 -63766653 + MSTB1 LTR MaLR 1 430 -2 194 133 0 0 chr9 54096393 54096423 -63766204 + MER5C DNA MER1_type 95 124 -200 1216 134 10 35 chr9 54097093 54097116 -63765511 + L1PB1 LINE L1 5951 5973 -178 836 106 0 0 chr9 54097116 54097220 -63765407 + U6 snRNA snRNA 4 107 0 1216 134 10 35 chr9 54097220 54097398 -63765229 + L1PB1 LINE L1 5973 6147 -4 376 143 0 44 chr9 54097897 54097988 -63764639 + (TTCC)n Simple_repeat Simple_repeat 1 87 0 1613 175 28 3 chr9 54097988 54098274 -63764353 - AluJo SINE Alu -7 305 13 439 313 129 5 chr9 54098487 54098688 -63763939 - MIR SINE MIR -23 239 14 528 330 133 34 chr9 54098781 54099405 -63763222 + L2 LINE L2 2589 3272 0 3091 184 22 6 chr9 54099414 54099948 -63762679 - MER52A LTR ERV1 -2 1753 1211 1879 198 120 35 chr9 54099952 54100633 -63761994 - MER52A LTR ERV1 -473 805 1 207 69 0 0 chr9 54100926 54100955 -63761672 + (T)n Simple_repeat Simple_repeat 1 29 0 1003 248 151 8 chr9 54100974 54101325 -63761302 + MLT1J LTR MaLR 1 401 -110 1687 187 6 35 chr9 54102005 54102321 -63760306 + AluJb SINE Alu 1 307 -5 32180 108 15 54 chr9 54102536 54108943 -63753684 - L1PA7 LINE L1 -1 6153 12 242 274 8 51 chr9 54109268 54109385 -63753242 - MLT1K LTR MaLR -150 438 327 1649 62 24 0 chr9 54109428 54109637 -63752990 + AluSp SINE Alu 1 214 -99 348 230 27 0 chr9 54109644 54109718 -63752909 + MER5A DNA MER1_type 11 86 -103 253 288 14 27 chr9 54109738 54109811 -63752816 + MER81 DNA DNA 40 111 -3 357 219 14 0 chr9 54109819 54109892 -63752735 + MER5A DNA MER1_type 88 161 -28 2331 199 52 62 chr9 54110392 54111020 -63751607 + LTR29 LTR ERV1 1 622 0 1097 164 58 88 chr9 54111086 54111312 -63751315 - MER20 DNA MER1_type 0 219 1 369 265 20 0 chr9 54111989 54112091 -63750536 + MER33 DNA MER1_type 2 105 -219 2343 90 3 0 chr9 54112097 54112396 -63750231 - AluSp SINE Alu -2 311 12 1773 139 7 21 chr9 54112467 54112748 -63749879 - AluJb SINE Alu -26 286 10 281 46 58 161 chr9 54112761 54112848 -63749779 + MER33 DNA MER1_type 199 276 -87 827 257 82 12 chr9 54112879 54113124 -63749503 + MLT1K LTR MaLR 173 434 -154 692 278 11 6 chr9 54113297 54113477 -63749150 - MLT1H1 LTR MaLR -374 181 1 2534 30 0 10 chr9 54113986 54114281 -63748346 + AluY SINE Alu 1 292 -19 209 273 10 61 chr9 54114324 54114423 -63748204 - MIR SINE MIR 0 262 169 1960 135 0 4 chr9 54114573 54114854 -63747773 - AluSg SINE Alu -30 280 1 553 254 0 15 chr9 54114867 54115001 -63747626 + MLT1K LTR MaLR 438 569 -19 718 276 109 81 chr9 54115209 54115728 -63746899 - L2 LINE L2 -49 3264 2737 1654 124 31 59 chr9 54115728 54116018 -63746609 - AluJb SINE Alu -8 304 23 718 276 109 81 chr9 54116018 54116192 -63746435 - L2 LINE L2 -576 2737 2569 284 372 25 0 chr9 54116433 54116554 -63746073 - L2 LINE L2 -905 2409 2286 1592 161 3 35 chr9 54116947 54117257 -63745370 + AluSx SINE Alu 1 300 -12 991 306 69 35 chr9 54117263 54117519 -63745108 + L1MC/D LINE L1 4771 5017 -1559 2261 100 0 3 chr9 54117519 54117809 -63744818 + AluSp SINE Alu 1 289 -24 991 306 69 35 chr9 54117809 54118571 -63744056 + L1MC/D LINE L1 5017 5823 -753 981 194 0 0 chr9 54119162 54119348 -63743279 + L1PA16 LINE L1 5961 6146 -20 1323 201 8 26 chr9 54119697 54119961 -63742666 + AluJo SINE Alu 9 267 -45 248 200 55 0 chr9 54120065 54120120 -63742507 + MER112 DNA MER1_type 203 260 0 238 276 92 51 chr9 54120916 54121014 -63741613 + L2 LINE L2 3147 3248 -24 24 0 0 0 chr9 54121372 54121396 -63741231 + AT_rich Low_complexity Low_complexity 1 24 0 273 337 0 11 chr9 54121413 54121508 -63741119 - MIR3 SINE MIR -2 206 113 2490 77 3 13 chr9 54121532 54121844 -63740783 - AluSp SINE Alu -4 309 1 800 250 126 41 chr9 54121904 54122316 -63740311 - L1ME4a LINE L1 -127 5994 5548 29 28 0 0 chr9 54122423 54122459 -63740168 + AT_rich Low_complexity Low_complexity 1 36 0 2023 239 40 44 chr9 54123750 54124452 -63738175 - L1ME4a LINE L1 -1127 5019 4321 18733 39 4 0 chr9 54124453 54127362 -63735265 - L1PA4 LINE L1 0 6155 3238 5228 88 14 8 chr9 54127362 54128075 -63734552 - L1P LINE L1 -5429 717 1 2433 253 50 48 chr9 54128111 54128275 -63734352 - L1ME4a LINE L1 -1872 4274 4112 1711 187 3 0 chr9 54128275 54128564 -63734063 - AluJb SINE Alu -22 290 1 2433 253 50 48 chr9 54128564 54128663 -63733964 - L1ME4a LINE L1 -2034 4112 4015 2324 88 0 0 chr9 54128663 54128947 -63733680 - AluSc SINE Alu -20 289 6 2433 253 50 48 chr9 54128947 54129616 -63733011 - L1ME4a LINE L1 -2131 4015 3339 29 0 0 0 chr9 54129633 54129662 -63732965 + AT_rich Low_complexity Low_complexity 1 29 0 2264 121 25 36 chr9 54129685 54130049 -63732578 - THE1B LTR MaLR -2 362 3 8431 105 2 3 chr9 54130051 54131187 -63731440 - THE1B-int LTR MaLR 0 1580 447 1940 135 0 10 chr9 54131287 54131584 -63731043 - AluSx SINE Alu -14 298 5 2143 95 0 27 chr9 54131605 54131899 -63730728 - AluY SINE Alu -9 302 17 1005 114 0 0 chr9 54131902 54132033 -63730594 - AluYa5 SINE Alu -180 131 1 836 200 12 12 chr9 54132430 54132590 -63730037 + FRAM SINE Alu 1 160 -16 1831 180 0 3 chr9 54133290 54133595 -63729032 + AluJb SINE Alu 2 305 -7 22 0 0 0 chr9 54133598 54133620 -63729007 + AT_rich Low_complexity Low_complexity 1 22 0 225 0 0 0 chr9 54133649 54133674 -63728953 + (T)n Simple_repeat Simple_repeat 1 25 0 3150 195 76 16 chr9 54133800 54134548 -63728079 - MLT1A2-int LTR MaLR -484 887 2 1582 204 14 50 chr9 54134558 54134717 -63727910 - MLT1A2 LTR MaLR -24 350 187 2874 170 162 36 chr9 54134717 54135416 -63727211 + LTR48 LTR ERV1 1 787 0 1582 204 14 50 chr9 54135416 54135619 -63727008 - MLT1A2 LTR MaLR -187 187 1 1949 232 69 9 chr9 54136141 54136577 -63726050 - LTR40b LTR ERVL 0 462 1 262 252 85 56 chr9 54137091 54137231 -63725396 - MIR SINE MIR -67 141 18 231 186 0 43 chr9 54137488 54137558 -63725069 + A-rich Low_complexity Low_complexity 4 70 0 2794 112 20 82 chr9 54137567 54138104 -63724523 + L1MA10 LINE L1 5392 5895 -417 690 213 7 26 chr9 54138104 54138259 -63724368 - MLT1A2 LTR MaLR -222 152 1 1504 248 26 20 chr9 54138269 54138715 -63723912 + L1MA10 LINE L1 5887 6334 0 925 214 130 53 chr9 54138992 54139314 -63723313 - MLT1J2 LTR MaLR 0 450 104 450 0 0 0 chr9 54140690 54140740 -63721887 + (CA)n Simple_repeat Simple_repeat 2 51 0 189 0 0 0 chr9 54140916 54140937 -63721690 + (TTG)n Simple_repeat Simple_repeat 1 21 0 2363 95 0 3 chr9 54141852 54142157 -63720470 - AluY SINE Alu -7 304 1 822 292 155 34 chr9 54142272 54143112 -63719515 + L2 LINE L2 2369 3299 -14 346 227 0 0 chr9 54143438 54143504 -63719123 + Charlie5 DNA MER1_type 1 66 -2546 378 0 0 0 chr9 54143569 54143611 -63719016 + (TA)n Simple_repeat Simple_repeat 2 43 0 2562 56 0 31 chr9 54143611 54143930 -63718697 - AluY SINE Alu -2 309 1 4878 172 40 14 chr9 54143930 54144912 -63717715 + L1MCa LINE L1 514 1520 -4906 515 266 107 43 chr9 54146259 54146492 -63716135 + MIR SINE MIR 15 262 0 7790 203 71 80 chr9 54146816 54147749 -63714878 + L1MDa LINE L1 22 962 -5578 2653 64 0 0 chr9 54147749 54148089 -63714538 + L1PA7 LINE L1 5825 6164 0 7790 203 71 80 chr9 54148089 54148271 -63714356 + L1MDa LINE L1 962 1144 -5396 1559 91 48 0 chr9 54148271 54148479 -63714148 - L1PA10 LINE L1 -4 6164 5947 7790 203 71 80 chr9 54148479 54149100 -63713527 + L1MDa LINE L1 1144 1738 -4802 6088 104 18 33 chr9 54149100 54150877 -63711750 + SVA Other Other 2 1384 -2 7790 203 71 80 chr9 54150877 54151459 -63711168 + L1MDa LINE L1 1738 2324 -4216 519 126 0 0 chr9 54151459 54151554 -63711073 + (CA)n Simple_repeat Simple_repeat 2 96 0 3740 214 32 27 chr9 54151559 54151675 -63710952 + L1MDa LINE L1 2341 2455 -4085 2083 128 7 0 chr9 54151675 54151964 -63710663 + AluSx SINE Alu 3 293 -19 3740 214 32 27 chr9 54151964 54152490 -63710137 + L1MDa LINE L1 2455 2977 -3563 1483 114 131 86 chr9 54152490 54152780 -63709847 + AluSx SINE Alu 1 303 -9 3740 214 32 27 chr9 54152780 54153493 -63709134 + L1MDa LINE L1 2977 3704 -2836 15100 141 17 31 chr9 54153600 54156079 -63706548 + L1M1 LINE L1 12 2456 -5109 464 266 38 13 chr9 54156324 54156482 -63706145 + AluSg/x SINE Alu 121 282 -30 412 284 67 26 chr9 54156744 54156938 -63705689 + L1ME LINE L1 5615 5816 -305 755 222 27 11 chr9 54157845 54158030 -63704597 - L1PB4 LINE L1 0 6156 5969 291 243 117 0 chr9 54159264 54159367 -63703260 + MIR SINE MIR 78 192 -70 276 314 29 20 chr9 54159428 54159530 -63703097 - MIR3 SINE MIR -17 191 89 2057 94 35 24 chr9 54160331 54160618 -63702009 - AluSx SINE Alu -22 290 1 1855 123 0 44 chr9 54161174 54161514 -63701113 + AluSg SINE Alu 1 327 0 186 277 43 0 chr9 54162206 54162253 -63700374 - L2 LINE L2 -3 3269 3221 811 272 56 0 chr9 54162288 54162501 -63700126 + Charlie1 DNA MER1_type 1 225 -2536 425 204 0 88 chr9 54162508 54162645 -63699982 + Charlie1 DNA MER1_type 2633 2757 -4 1987 136 23 10 chr9 54163478 54163786 -63698841 + AluJb SINE Alu 1 312 0 26 30 0 0 chr9 54164433 54164466 -63698161 + AT_rich Low_complexity Low_complexity 1 33 0 2378 73 3 0 chr9 54164787 54165075 -63697552 + AluSp SINE Alu 1 289 -24 443 186 176 39 chr9 54165206 54165308 -63697319 + FLAM_C SINE Alu 1 116 -17 22 0 0 0 chr9 54166419 54166441 -63696186 + AT_rich Low_complexity Low_complexity 1 22 0 4312 128 29 2 chr9 54167421 54168039 -63694588 + MER41B LTR ERV1 1 635 0 296 281 162 0 chr9 54168360 54168484 -63694143 - MIR SINE MIR -26 182 37 192 116 90 7 chr9 54168649 54168804 -63693823 + (TA)n Simple_repeat Simple_repeat 2 169 0 2301 67 20 30 chr9 54169131 54169431 -63693196 + AluY SINE Alu 1 297 -14 572 263 80 40 chr9 54169451 54169675 -63692952 - MIR SINE MIR -28 234 2 2221 148 25 25 chr9 54169886 54170250 -63692377 + THE1B LTR MaLR 1 364 0 293 275 60 88 chr9 54170516 54170901 -63691726 - L1MC5 LINE L1 -48 7913 7540 232 238 48 32 chr9 54172757 54172820 -63689807 + L2 LINE L2 3209 3272 0 339 130 0 0 chr9 54172821 54172875 -63689752 + (TGGA)n Simple_repeat Simple_repeat 3 56 0 240 250 83 19 chr9 54172934 54173042 -63689585 - L1ME4a LINE L1 -63 6058 5944 2192 129 0 10 chr9 54173368 54173679 -63688948 - AluSx SINE Alu -4 308 1 272 325 89 16 chr9 54173881 54174121 -63688506 - MIR SINE MIR -7 255 2 252 344 123 8 chr9 54174317 54174439 -63688188 - L2 LINE L2 -4 3268 3133 200 244 22 0 chr9 54174666 54174711 -63687916 - L3b LINE CR1 -238 1345 1300 437 223 123 95 chr9 54175631 54175842 -63686785 + MIR SINE MIR 40 256 -6 257 333 114 35 chr9 54175919 54176120 -63686507 - MIR SINE MIR -9 253 37 335 240 263 29 chr9 54176322 54176497 -63686130 - MER113 DNA MER1_type? -305 216 1 1645 191 17 3 chr9 54177522 54177816 -63684811 + AluJb SINE Alu 1 298 -14 2347 97 7 0 chr9 54178310 54178618 -63684009 - AluSp SINE Alu -2 311 2 231 229 171 19 chr9 54179714 54179819 -63682808 + MIR3 SINE MIR 78 198 -10 23 54 0 0 chr9 54179938 54179975 -63682652 + AT_rich Low_complexity Low_complexity 1 37 0 1301 247 50 12 chr9 54181325 54181742 -63680885 - L1ME2 LINE L1 -10 6154 5722 2332 67 20 3 chr9 54181818 54182118 -63680509 + AluY SINE Alu 1 305 -6 23 0 0 0 chr9 54183310 54183333 -63679294 + AT_rich Low_complexity Low_complexity 1 23 0 1190 123 0 0 chr9 54183457 54183612 -63679015 - AluSg/x SINE Alu -31 281 127 2297 100 3 7 chr9 54183617 54183927 -63678700 - AluSc SINE Alu 0 309 1 285 383 62 16 chr9 54186080 54186208 -63676419 + L2 LINE L2 3134 3267 -5 392 290 37 84 chr9 54186295 54186509 -63676118 - MIR3 SINE MIR -3 205 2 1394 208 96 43 chr9 54187297 54187715 -63674912 - MLT1D LTR MaLR 0 505 66 2284 142 36 75 chr9 54187715 54188109 -63674518 + MSTB1 LTR MaLR 1 409 -23 2303 104 54 28 chr9 54188109 54188463 -63674164 + THE1B LTR MaLR 1 363 -1 12121 88 7 29 chr9 54188464 54188833 -63673794 + THE1B-int LTR MaLR 1 376 -1204 614 48 0 12 chr9 54188833 54188916 -63673711 + (TTCC)n Simple_repeat Simple_repeat 3 84 0 2012 113 18 0 chr9 54188920 54189194 -63673433 - AluSp SINE Alu -33 280 2 12121 88 7 29 chr9 54189194 54190060 -63672567 + THE1B-int LTR MaLR 379 1200 -380 2304 84 3 29 chr9 54190060 54190371 -63672256 - AluSg SINE Alu -7 303 1 12121 88 7 29 chr9 54190371 54190744 -63671883 + THE1B-int LTR MaLR 1200 1580 0 2244 133 48 26 chr9 54190749 54191101 -63671526 + THE1B LTR MaLR 5 364 0 2284 142 36 75 chr9 54191101 54191141 -63671486 + MSTB1 LTR MaLR 413 426 -6 436 169 0 14 chr9 54191148 54191219 -63671408 - MLT1D LTR MaLR -435 70 1 1286 93 0 107 chr9 54191401 54191617 -63671010 + MER1B DNA MER1_type 76 268 -71 239 293 176 23 chr9 54193376 54193632 -63668995 - L2 LINE L2 -1221 2093 1799 638 173 8 34 chr9 54194410 54194650 -63667977 + CT-rich Low_complexity Low_complexity 1 233 0 25 0 0 0 chr9 54195372 54195397 -63667230 + AT_rich Low_complexity Low_complexity 1 25 0 23 78 0 0 chr9 54196189 54196240 -63666387 + AT_rich Low_complexity Low_complexity 1 51 0 234 0 0 0 chr9 54198291 54198317 -63664310 + (T)n Simple_repeat Simple_repeat 1 26 0 422 252 106 47 chr9 54198665 54198900 -63663727 - MIR SINE MIR 0 262 15 335 352 77 43 chr9 54201060 54202045 -63660582 - L2 LINE L2 -9 3263 2240 1550 132 107 4 chr9 54202150 54202393 -63660234 + AluJb SINE Alu 1 268 -44 440 265 28 116 chr9 54204152 54204367 -63658260 - MER91A DNA MER1_type 0 196 1 352 167 9 93 chr9 54205191 54205299 -63657328 + MIR SINE MIR 114 212 -50 747 239 54 81 chr9 54205689 54206024 -63656603 - MER102b DNA MER1_type -11 330 5 2064 102 3 7 chr9 54207146 54207430 -63655197 + AluSq SINE Alu 29 311 -2 217 160 0 80 chr9 54207437 54207487 -63655140 - MIR SINE MIR -142 120 75 264 257 147 0 chr9 54208716 54208852 -63653775 + L2 LINE L2 2837 2992 -321 2107 111 45 0 chr9 54211454 54211743 -63650884 + AluSx SINE Alu 1 302 -10 22 0 0 0 chr9 54213280 54213302 -63649325 + AT_rich Low_complexity Low_complexity 1 22 0 916 101 0 0 chr9 54213373 54213492 -63649135 + AluSq/x SINE Alu 1 119 -194 2400 86 7 0 chr9 54213649 54213952 -63648675 + AluSp SINE Alu 1 305 -8 2009 102 28 32 chr9 54213958 54214242 -63648385 + AluSx SINE Alu 19 301 -11 2039 109 0 7 chr9 54214527 54214810 -63647817 - AluSx SINE Alu -21 291 11 444 271 100 24 chr9 54214956 54215247 -63647380 - HAL1b LINE L1 -252 1096 784 570 242 83 58 chr9 54216281 54216521 -63646106 + MIR SINE MIR 17 262 0 904 239 60 0 chr9 54216817 54217018 -63645609 + Tigger7 DNA MER2_type 12 224 -509 589 176 37 0 chr9 54217009 54217117 -63645510 + Tigger7 DNA MER2_type 2470 2581 -6 * 2292 103 0 10 chr9 54218820 54219132 -63643495 + AluSx SINE Alu 1 309 -3 307 351 107 6 chr9 54219148 54219316 -63643311 - MER91A DNA MER1_type 0 196 12 2101 201 102 22 chr9 54220860 54221226 -63641401 - Charlie7 DNA MER1_type -300 2312 1977 234 0 0 0 chr9 54221226 54221252 -63641375 + (TG)n Simple_repeat Simple_repeat 1 26 0 2101 201 102 22 chr9 54221252 54221563 -63641064 - Charlie7 DNA MER1_type -635 1977 1581 595 238 13 40 chr9 54221804 54221837 -63640790 + MER5B DNA MER1_type 32 64 -114 1597 195 10 17 chr9 54221837 54222139 -63640488 + AluJo SINE Alu 1 300 -12 595 238 13 40 chr9 54222139 54222256 -63640371 + MER5B DNA MER1_type 64 178 0 450 276 167 6 chr9 54222258 54222414 -63640213 - MER5A DNA MER1_type 0 189 9 1814 43 0 0 chr9 54224000 54224209 -63638418 - AluY SINE Alu 0 311 103 22 35 0 0 chr9 54224688 54224717 -63637910 + AT_rich Low_complexity Low_complexity 1 29 0 459 289 152 14 chr9 54225275 54225486 -63637141 - MIR SINE MIR -14 248 9 299 225 62 0 chr9 54225978 54226058 -63636569 - Charlie8 DNA MER1_type -2187 230 146 254 200 33 17 chr9 54226226 54226286 -63636341 - MER94 DNA DNA 0 134 74 641 251 34 22 chr9 54227601 54227868 -63634759 - MER114 LTR ERV -378 270 1 2208 110 134 11 chr9 54228220 54228601 -63634026 + MSTA LTR MaLR 1 428 0 2381 69 3 26 chr9 54228851 54229156 -63633471 + AluY SINE Alu 1 298 -13 342 67 0 0 chr9 54230320 54230365 -63632262 + (CA)n Simple_repeat Simple_repeat 1 45 0 505 308 111 10 chr9 54231170 54231368 -63631259 - MIR SINE MIR -44 218 1 186 187 133 77 chr9 54231838 54231945 -63630682 - MIR SINE MIR -33 175 72 192 77 0 0 chr9 54231976 54232002 -63630625 + (T)n Simple_repeat Simple_repeat 1 26 0 412 296 56 84 chr9 54232025 54232238 -63630389 - MIR SINE MIR -30 232 26 2097 144 0 6 chr9 54233060 54233372 -63629255 - AluJo SINE Alu -2 310 1 226 24 98 0 chr9 54234050 54234091 -63628536 + T-rich Low_complexity Low_complexity 2 46 0 282 179 0 0 chr9 54234638 54234694 -63627933 + CT-rich Low_complexity Low_complexity 1 56 0 331 324 118 29 chr9 54234701 54234871 -63627756 - L2 LINE L2 -11 3261 3077 239 154 0 19 chr9 54235443 54235495 -63627132 + (TATATG)n Simple_repeat Simple_repeat 2 52 0 288 289 20 27 chr9 54237695 54237844 -63624783 + CT-rich Low_complexity Low_complexity 2 149 0 2092 114 0 46 chr9 54238872 54239196 -63623431 + AluSx SINE Alu 1 309 -3 225 271 131 36 chr9 54239310 54239531 -63623096 - L1MC4 LINE L1 -200 7842 7601 321 303 46 0 chr9 54239568 54239720 -63622907 - L1MC5 LINE L1 -541 7420 7262 361 306 95 17 chr9 54239758 54239992 -63622635 - L1MC4 LINE L1 -526 7282 7018 27 49 0 0 chr9 54240726 54240767 -63621860 + AT_rich Low_complexity Low_complexity 1 41 0 278 347 42 0 chr9 54241106 54241201 -63621426 + L2 LINE L2 2956 3054 -218 754 320 24 12 chr9 54241538 54241785 -63620842 - MIR SINE MIR 0 262 13 669 94 8 31 chr9 54241819 54241946 -63620681 + (TAGA)n Simple_repeat Simple_repeat 3 126 0 269 26 26 0 chr9 54243186 54243224 -63619403 + (TTTTG)n Simple_repeat Simple_repeat 3 41 0 879 204 42 31 chr9 54244084 54244275 -63618352 + MER58A DNA MER1_type 1 193 -31 351 386 19 0 chr9 54245203 54245361 -63617266 + L2 LINE L2 3112 3272 0 2387 77 0 3 chr9 54246386 54246685 -63615942 + AluSg SINE Alu 1 298 -12 693 188 109 14 chr9 54247569 54247707 -63614920 - FRAM SINE Alu -26 150 1 233 288 0 0 chr9 54249007 54249066 -63613561 - L2 LINE L2 -25 3288 3230 37 0 0 0 chr9 54249149 54249186 -63613441 + AT_rich Low_complexity Low_complexity 1 37 0 1979 145 26 0 chr9 54249893 54250197 -63612430 - AluSx SINE Alu 0 312 1 215 134 30 75 chr9 54250311 54250378 -63612249 + T-rich Low_complexity Low_complexity 2 65 0 5454 11 19 2 chr9 54251368 54251995 -63610632 - L1PA3 LINE L1 -4 6151 5514 263 295 74 21 chr9 54252594 54252689 -63609938 - L2 LINE L2 -4 3309 3210 255 238 0 0 chr9 54253055 54253118 -63609509 + L1MD2 LINE L1 5923 5985 -374 391 198 49 0 chr9 54253125 54253206 -63609421 + L1MD2 LINE L1 6054 6138 -221 1799 164 68 3 chr9 54253218 54253541 -63609086 - MER2 DNA MER2_type 0 344 1 598 218 7 0 chr9 54253623 54253770 -63608857 + L1MD1 LINE L1 6081 6228 -14 186 133 0 0 chr9 54254017 54254047 -63608580 + (A)n Simple_repeat Simple_repeat 1 30 0 2173 118 0 0 chr9 54254757 54255053 -63607574 + AluSx SINE Alu 1 296 -16 392 271 0 0 chr9 54255917 54256002 -63606625 + MIR3 SINE MIR 111 195 -13 21 0 0 0 chr9 54258450 54258471 -63604156 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr9 54259768 54259798 -63602829 + AT_rich Low_complexity Low_complexity 1 30 0 523 257 50 9 chr9 54262650 54262872 -63599755 - L1M4 LINE L1 -815 5331 5101 301 316 63 25 chr9 54263679 54263837 -63598790 - L1ME2 LINE L1 -267 5897 5734 291 247 69 59 chr9 54263967 54264030 -63598597 - L1ME2 LINE L1 -921 5225 5164 2178 94 0 3 chr9 54264030 54264342 -63598285 - AluSq SINE Alu 0 311 1 291 247 69 59 chr9 54264342 54264597 -63598030 - L1ME2 LINE L1 -982 5164 4903 349 259 93 52 chr9 54264626 54264819 -63597808 - L1ME3A LINE L1 0 6170 5970 1482 255 40 17 chr9 54264973 54265443 -63597184 - L1ME3A LINE L1 -233 5937 5457 2146 64 79 4 chr9 54265714 54265994 -63596633 - AluY SINE Alu -10 301 1 309 304 131 21 chr9 54266018 54266255 -63596372 - L1ME2 LINE L1 -1256 4890 4628 521 229 29 29 chr9 54266424 54266564 -63596063 - L1ME3A LINE L1 0 6170 6031 263 191 0 0 chr9 54266568 54266615 -63596012 - L1ME3A LINE L1 -542 5628 5582 1231 228 88 47 chr9 54266615 54267059 -63595568 - MLT1C LTR MaLR 0 467 6 559 276 121 8 chr9 54267061 54267419 -63595208 - L1ME3A LINE L1 -574 5590 5195 362 283 72 14 chr9 54268041 54268179 -63594448 - L1ME3A LINE L1 -3603 2543 2398 607 199 8 53 chr9 54268179 54268310 -63594317 - FLAM_A SINE Alu -8 125 1 501 172 35 0 chr9 54268645 54268761 -63593866 - L1MB7 LINE L1 -5 6179 6060 5514 164 26 33 chr9 54268776 54269851 -63592776 - L1MC1 LINE L1 -11 6602 5535 640 25 0 0 chr9 54269898 54269978 -63592649 - L1PA2 LINE L1 -1 6154 6075 2856 211 23 18 chr9 54270009 54270668 -63591959 - L1MC1 LINE L1 -1938 4488 3827 5925 152 39 12 chr9 54270676 54272090 -63590537 + L1MA5A LINE L1 4831 6287 -10 4090 209 59 20 chr9 54272120 54273847 -63588780 - L1MC1 LINE L1 -2601 3825 2019 252 0 0 0 chr9 54273847 54273875 -63588752 + (TG)n Simple_repeat Simple_repeat 2 29 0 4090 209 59 20 chr9 54273875 54273994 -63588633 - L1MC1 LINE L1 -4407 2019 1906 2256 176 45 25 chr9 54273973 54274758 -63587869 - L1M4 LINE L1 -408 6056 5257 * 437 221 12 0 chr9 54274784 54274870 -63587757 - Tigger5 DNA MER2_type -2235 88 2 1657 224 47 24 chr9 54274871 54275295 -63587332 - L1M4 LINE L1 -1168 6397 5964 1577 222 53 50 chr9 54275271 54275856 -63586771 - L1M4 LINE L1 -3429 4136 3552 * 1007 196 102 4 chr9 54275878 54276103 -63586524 - L1M4 LINE L1 -6280 1183 937 755 193 0 0 chr9 54276135 54276280 -63586347 - AluSg/x SINE Alu 0 310 166 771 268 109 36 chr9 54276365 54276392 -63586235 + L1ME4a LINE L1 5465 5489 -632 2261 56 52 14 chr9 54276392 54276680 -63585947 + AluY SINE Alu 1 299 -12 771 268 109 36 chr9 54276680 54277238 -63585389 + L1ME4a LINE L1 5489 6093 -28 1740 170 3 7 chr9 54277327 54277610 -63585017 + AluJo SINE Alu 1 282 -30 355 321 108 16 chr9 54278492 54278713 -63583914 + MIR SINE MIR 8 256 -6 1447 117 12 54 chr9 54279045 54279285 -63583342 - MER30 DNA MER1_type 0 230 1 579 208 25 96 chr9 54279735 54279975 -63582652 - MER112 DNA MER1_type -12 248 26 593 158 253 34 chr9 54280327 54280473 -63582154 + MER45A DNA AcHobo 1 178 0 2318 76 0 7 chr9 54282124 54282425 -63580202 + AluY SINE Alu 1 299 -12 423 269 0 0 chr9 54282531 54282598 -63580029 + T-rich Low_complexity Low_complexity 1 67 0 796 211 18 95 chr9 54282874 54283158 -63579469 - L1MC4 LINE L1 -1006 7036 6775 711 228 132 36 chr9 54284389 54284608 -63578019 + MIR SINE MIR 2 241 -21 815 289 154 46 chr9 54285009 54285694 -63576933 + L2 LINE L2 2489 3275 -38 1254 172 26 13 chr9 54286083 54286315 -63576312 - AluJo SINE Alu -77 235 1 2330 144 59 7 chr9 54287032 54287441 -63575186 + MSTB1 LTR MaLR 1 430 -2 199 133 0 0 chr9 54287860 54287890 -63574737 + MER5C DNA MER1_type 95 124 -200 1111 134 10 35 chr9 54288560 54288583 -63574044 + L1PB1 LINE L1 5951 5973 -178 784 106 0 0 chr9 54288583 54288687 -63573940 + U6 snRNA snRNA 4 107 0 1111 134 10 35 chr9 54288687 54288865 -63573762 + L1PB1 LINE L1 5973 6147 -4 376 143 0 44 chr9 54289364 54289455 -63573172 + (TTCC)n Simple_repeat Simple_repeat 1 87 0 1610 175 28 3 chr9 54289455 54289741 -63572886 - AluJo SINE Alu -7 305 13 433 318 129 5 chr9 54289953 54290154 -63572473 - MIR SINE MIR -23 239 14 547 328 133 34 chr9 54290247 54290871 -63571756 + L2 LINE L2 2589 3272 0 3120 184 22 6 chr9 54290880 54291414 -63571213 - MER52A LTR ERV1 -2 1753 1211 1847 207 259 51 chr9 54291418 54292099 -63570528 - MER52A LTR ERV1 -473 805 1 994 248 151 8 chr9 54292442 54292793 -63569834 + MLT1J LTR MaLR 1 401 -110 1677 187 6 35 chr9 54293473 54293789 -63568838 + AluJb SINE Alu 1 307 -5 11135 91 11 1 chr9 54294004 54296352 -63566275 - L1PA7 LINE L1 -1 6153 3785 399 162 27 0 chr9 54296353 54296427 -63566200 - AluS SINE Alu -231 77 2 376 297 88 20 chr9 54296668 54296816 -63565811 + MIR3 SINE MIR 39 196 -12 225 94 0 0 chr9 54296876 54296908 -63565719 + (TG)n Simple_repeat Simple_repeat 1 32 0 682 237 73 18 chr9 54297237 54297472 -63565155 - MIR SINE MIR 0 262 16 2001 136 20 0 chr9 54297494 54297788 -63564839 + AluSq SINE Alu 1 300 -13 654 150 23 127 chr9 54297909 54298062 -63564565 - Charlie5 DNA MER1_type 0 2585 2418 2915 3 0 0 chr9 54298062 54298373 -63564254 + AluYa5 SINE Alu 1 311 0 360 0 0 0 chr9 54298373 54298413 -63564214 + (TA)n Simple_repeat Simple_repeat 2 41 0 654 150 23 127 chr9 54298413 54298478 -63564149 - Charlie5 DNA MER1_type -165 2420 2389 346 227 0 0 chr9 54298478 54298544 -63564083 - Charlie5 DNA MER1_type -2546 66 1 822 292 155 34 chr9 54298870 54299710 -63562917 - L2 LINE L2 -14 3299 2369 2363 95 0 3 chr9 54299825 54300130 -63562497 + AluY SINE Alu 1 304 -7 189 0 0 0 chr9 54301045 54301066 -63561561 + (CAA)n Simple_repeat Simple_repeat 1 21 0 450 0 0 0 chr9 54301242 54301292 -63561335 + (TG)n Simple_repeat Simple_repeat 2 51 0 925 214 130 53 chr9 54302668 54302990 -63559637 + MLT1J2 LTR MaLR 104 450 0 1504 248 26 20 chr9 54303267 54303713 -63558914 - L1MA10 LINE L1 0 6334 5887 690 213 7 26 chr9 54303723 54303878 -63558749 + MLT1A2 LTR MaLR 1 152 -222 2806 112 21 78 chr9 54303878 54304413 -63558214 - L1MA10 LINE L1 -417 5895 5392 231 186 0 43 chr9 54304422 54304492 -63558135 + T-rich Low_complexity Low_complexity 4 70 0 262 252 85 56 chr9 54304749 54304889 -63557738 + MIR SINE MIR 18 155 -67 1949 232 69 9 chr9 54305403 54305839 -63556788 + LTR40b LTR ERVL 1 462 0 1564 207 14 50 chr9 54306361 54306564 -63556063 + MLT1A2 LTR MaLR 1 187 -187 2874 170 162 36 chr9 54306564 54307263 -63555364 - LTR48 LTR ERV1 0 787 1 1564 207 14 50 chr9 54307263 54307422 -63555205 + MLT1A2 LTR MaLR 187 350 -24 3181 195 76 14 chr9 54307432 54308179 -63554448 + MLT1A2-int LTR MaLR 2 887 -484 360 244 23 0 chr9 54308331 54308417 -63554210 + MLT-int LTR MaLR 686 773 -962 1682 224 46 35 chr9 54308643 54309013 -63553614 - MLT1-int LTR MaLR -85 1286 913 244 200 0 0 chr9 54309031 54309076 -63553551 + MLT1A2-int LTR MaLR 1691 1735 0 1586 188 29 44 chr9 54309076 54309416 -63553211 + MLT1A2 LTR MaLR 1 335 -39 181 297 10 69 chr9 54309873 54309952 -63552675 - MIR3 SINE MIR -10 198 125 1692 223 35 30 chr9 54309952 54310324 -63552303 - MLT1A2 LTR MaLR 0 374 1 181 297 10 69 chr9 54310324 54310345 -63552282 - MIR3 SINE MIR -83 125 104 391 313 138 6 chr9 54311185 54311345 -63551282 - MIR3 SINE MIR -10 198 18 1011 113 0 0 chr9 54311389 54311540 -63551087 - L1MA8 LINE L1 -381 5910 5760 281 216 46 60 chr9 54311569 54311711 -63550916 - MER34 LTR ERV1 -377 165 1 2134 76 83 10 chr9 54313100 54313390 -63549237 - AluY SINE Alu 0 311 1 1107 176 11 0 chr9 54314130 54314306 -63548321 - MER45A DNA AcHobo 0 178 1 1697 101 14 78 chr9 54315758 54316111 -63546516 - MER61C LTR ERV1 -10 424 1 2279 91 0 3 chr9 54316139 54316437 -63546190 - AluSq SINE Alu -16 297 1 441 163 76 0 chr9 54316991 54317083 -63545544 - L1MA8 LINE L1 -12 6279 6181 264 378 53 68 chr9 54317838 54318161 -63544466 + L2 LINE L2 2936 3253 -19 1759 112 98 21 chr9 54319007 54319294 -63543333 - AluSx SINE Alu -3 309 1 6958 132 15 10 chr9 54319514 54320978 -63541649 + L1MA3 LINE L1 4805 6274 -31 2143 139 22 33 chr9 54320981 54321347 -63541280 + THE1B LTR MaLR 3 364 0 3201 88 6 52 chr9 54321347 54321749 -63540878 + THE1B-int LTR MaLR 1 379 -1201 2335 95 0 16 chr9 54321749 54322064 -63540563 + AluY SINE Alu 1 310 -1 3201 88 6 52 chr9 54322064 54322141 -63540486 + THE1B-int LTR MaLR 379 458 -1122 1915 156 7 10 chr9 54322441 54322748 -63539879 - AluSx SINE Alu -6 306 1 181 229 0 0 chr9 54323469 54323504 -63539123 - L2 LINE L2 -15 3298 3264 314 229 104 21 chr9 54323505 54323601 -63539026 - MIR3 SINE MIR -30 178 75 733 234 213 0 chr9 54323651 54323848 -63538779 + MIR SINE MIR 2 240 -22 1050 147 69 64 chr9 54324451 54324669 -63537958 + MER20 DNA MER1_type 1 219 0 4587 144 79 18 chr9 54325629 54326542 -63536085 - L1MB3 LINE L1 -9 6174 5205 387 298 92 0 chr9 54326908 54327039 -63535588 - MIR3 SINE MIR -11 197 55 2563 54 0 0 chr9 54327111 54327406 -63535221 + AluY SINE Alu 1 295 -16 224 298 39 39 chr9 54327546 54327650 -63534977 + MIR3 SINE MIR 71 174 -34 817 153 8 8 chr9 54328398 54328522 -63534105 - FLAM_C SINE Alu -19 124 1 227 93 23 0 chr9 54328706 54328749 -63533878 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 6958 82 8 53 chr9 54328749 54330739 -63531888 - SVA Other Other -520 1385 433 5610 75 28 50 chr9 54330793 54331647 -63530980 - SVA Other Other -518 868 34 812 159 41 0 chr9 54331648 54331793 -63530834 + L1MB5 LINE L1 6024 6174 0 897 158 0 8 chr9 54331805 54331938 -63530689 + FLAM_C SINE Alu 1 132 -1 225 218 0 0 chr9 54331938 54331987 -63530640 + A-rich Low_complexity Low_complexity 7 55 0 196 351 0 0 chr9 54332060 54332117 -63530510 - MIR SINE MIR -78 130 74 341 217 130 43 chr9 54334993 54335085 -63527542 - MIR3 SINE MIR -8 200 101 314 301 93 27 chr9 54335125 54335308 -63527319 - MLT1J2 LTR MaLR 0 450 256 3322 79 23 11 chr9 54335581 54336024 -63526603 - MLT2A2 LTR ERVL -5 448 1 2498 58 9 9 chr9 54336024 54336353 -63526274 - HERVL-A2 LTR ERVL 0 5654 5326 5247 111 52 8 chr9 54336366 54337147 -63525480 - L1MA3 LINE L1 -10 6295 5480 215 191 0 0 chr9 54337422 54337464 -63525163 + MIR SINE MIR 172 213 -49 311 325 95 8 chr9 54337492 54337618 -63525009 - L2 LINE L2 -38 3234 3098 180 234 0 0 chr9 54338562 54338609 -63524018 + (TG)n Simple_repeat Simple_repeat 1 47 0 2249 75 0 3 chr9 54338752 54339034 -63523593 - AluY SINE Alu -4 307 27 515 313 6 24 chr9 54339228 54339394 -63523233 + MIR3 SINE MIR 21 183 -25 260 68 0 23 chr9 54340029 54340073 -63522554 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 223 277 31 15 chr9 54340967 54341032 -63521595 - L2 LINE L2 -1 3271 3206 697 199 59 50 chr9 54341981 54342202 -63520425 - MER112 DNA MER1_type -32 228 6 216 254 209 36 chr9 54343756 54343866 -63518761 - MIR3 SINE MIR -79 129 1 36 53 0 0 chr9 54344611 54344668 -63517959 + AT_rich Low_complexity Low_complexity 1 57 0 2002 254 96 90 chr9 54344874 54346569 -63516058 - HAL1 LINE L1 0 2507 804 253 22 43 22 chr9 54348562 54348608 -63514019 + (TTTG)n Simple_repeat Simple_repeat 1 180 0 2217 90 0 0 chr9 54348608 54348886 -63513741 - AluSc SINE Alu -1 323 1 1588 196 44 6 chr9 54350687 54351008 -63511619 + MER58B DNA MER1_type 1 333 -8 30 45 0 0 chr9 54351198 54351242 -63511385 + AT_rich Low_complexity Low_complexity 1 44 0 239 300 23 39 chr9 54352502 54352632 -63509995 + L1P4 LINE L1 5323 5450 -724 728 231 39 39 chr9 54353059 54353262 -63509365 - MER3 DNA MER1_type 0 209 7 297 255 111 39 chr9 54353288 54353441 -63509186 + L1ME4a LINE L1 5957 6120 -1 339 256 174 18 chr9 54355865 54356084 -63506543 - MIR SINE MIR -8 254 2 2139 97 11 0 chr9 54359199 54359478 -63503149 + AluSq SINE Alu 2 283 -30 300 167 74 0 chr9 54360112 54360166 -63502461 + MER5A DNA MER1_type 55 112 -77 430 248 20 0 chr9 54360203 54360304 -63502323 - MER5A DNA MER1_type 0 189 87 23 0 0 0 chr9 54360955 54360978 -63501649 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr9 54361231 54361253 -63501374 + AT_rich Low_complexity Low_complexity 1 22 0 318 265 153 37 chr9 54361822 54362011 -63500616 - MLT1K LTR MaLR -235 353 143 2387 81 0 0 chr9 54363571 54363868 -63498759 + AluSc SINE Alu 1 297 -12 345 339 186 0 chr9 54364023 54364206 -63498421 + MIR SINE MIR 17 233 -29 623 152 57 3 chr9 54364546 54364776 -63497851 + AluJ SINE Alu 1 300 -12 1013 208 27 0 chr9 54364815 54364998 -63497629 + MER58A DNA MER1_type 37 224 0 234 274 226 12 chr9 54365005 54365089 -63497538 + MIR SINE MIR 15 116 -146 234 0 0 0 chr9 54366258 54366284 -63496343 + (T)n Simple_repeat Simple_repeat 1 26 0 2047 126 0 20 chr9 54367368 54367669 -63494958 + AluSx SINE Alu 2 296 -16 430 145 26 0 chr9 54367848 54367924 -63494703 - L1MB8 LINE L1 -6 6172 6095 3767 158 59 64 chr9 54367939 54368400 -63494227 - L1MB4 LINE L1 -28 6152 5690 246 118 0 0 chr9 54368400 54368434 -63494193 + U2 snRNA snRNA 1 34 -154 3767 158 59 64 chr9 54368434 54368920 -63493707 - L1MB4 LINE L1 -490 5690 5184 1796 162 48 3 chr9 54368920 54369210 -63493417 + AluJo SINE Alu 1 303 -9 3767 158 59 64 chr9 54369210 54369314 -63493313 - L1MB4 LINE L1 -996 5184 5081 2189 141 0 0 chr9 54369427 54369732 -63492895 + AluSx SINE Alu 1 305 -7 230 177 38 76 chr9 54370013 54370092 -63492535 + L2 LINE L2 2704 2779 -535 218 167 0 0 chr9 54370155 54370191 -63492436 + (TGGG)n Simple_repeat Simple_repeat 2 37 0 234 0 0 0 chr9 54373112 54373138 -63489489 + (A)n Simple_repeat Simple_repeat 1 26 0 189 71 107 0 chr9 54375004 54375032 -63487595 + L2 LINE L2 3267 3297 -16 227 222 0 0 chr9 54377932 54377977 -63484650 + MER63A DNA MER1_type 131 175 -35 264 59 0 0 chr9 54378232 54378266 -63484361 + (TG)n Simple_repeat Simple_repeat 2 35 0 570 318 68 19 chr9 54379134 54379442 -63483185 + LTR16C LTR ERVL 169 491 0 2158 119 10 16 chr9 54379761 54380071 -63482556 + AluSx SINE Alu 1 308 -4 682 182 0 33 chr9 54380130 54380251 -63482376 - FLAM_A SINE Alu -16 117 1 690 197 11 6 chr9 54380661 54380839 -63481788 + GA-rich Low_complexity Low_complexity 1 179 0 3765 143 16 88 chr9 54381202 54381951 -63480676 + L1MCa LINE L1 506 1200 -5226 255 167 21 0 chr9 54381968 54382016 -63480611 + L1MB7 LINE L1 6028 6076 -108 * 7655 178 31 16 chr9 54382006 54382509 -63480118 + L1MCa LINE L1 12 506 -5920 2386 75 0 33 chr9 54382509 54382815 -63479812 - AluY SINE Alu -15 296 1 7655 178 31 16 chr9 54382815 54383797 -63478830 + L1MCa LINE L1 506 1520 -4906 515 266 107 43 chr9 54385144 54385377 -63477250 + MIR SINE MIR 15 262 0 3016 256 62 18 chr9 54385701 54386632 -63475995 + L1MDa LINE L1 22 1075 -5465 1944 55 0 0 chr9 54386634 54386871 -63475756 + L1PA7 LINE L1 5825 6061 -93 878 67 25 34 chr9 54387074 54387193 -63475434 + AluSq/x SINE Alu 1 118 -195 1843 122 163 73 chr9 54387685 54388054 -63474573 - MER4A LTR ERV1 0 664 263 600 122 10 10 chr9 54388054 54388152 -63474475 - MER4A LTR ERV1 -566 98 1 228 273 15 30 chr9 54389575 54389641 -63472986 - L2 LINE L2 -3 3269 3205 2022 113 65 0 chr9 54391203 54391478 -63471149 + AluSx SINE Alu 1 293 -19 421 238 70 121 chr9 54392146 54392419 -63470208 - Charlie8 DNA MER1_type -989 1428 72 2410 63 40 0 chr9 54392611 54392910 -63469717 + AluY SINE Alu 1 311 0 409 279 99 60 chr9 54393163 54393364 -63469263 - MIR SINE MIR -27 235 27 378 200 0 38 chr9 54393552 54393632 -63468995 + AluS SINE Alu 1 77 -226 2197 104 3 3 chr9 54394597 54394894 -63467733 + AluSx SINE Alu 1 297 -15 210 154 0 0 chr9 54395387 54395426 -63467201 + A-rich Low_complexity Low_complexity 1 39 0 282 192 82 27 chr9 54396469 54396542 -63466085 - LTR67 LTR ERVL -2 555 479 2082 169 67 30 chr9 54396552 54396983 -63465644 + MLT1D LTR MaLR 1 447 -58 4211 171 53 30 chr9 54397014 54397710 -63464917 - L1MB5 LINE L1 -7 6167 5445 2757 164 46 82 chr9 54397710 54398345 -63464282 + LTR9 LTR ERV1 1 612 0 4211 171 53 30 chr9 54398345 54398538 -63464089 - L1MB5 LINE L1 -729 5445 5258 315 118 39 0 chr9 54398583 54398634 -63463993 + MLT1D LTR MaLR 439 491 -14 506 335 59 0 chr9 54399058 54399261 -63463366 + L3 LINE CR1 986 1200 -377 2448 97 31 6 chr9 54399265 54399617 -63463010 - MER34C LTR ERV1 -219 366 6 4570 78 5 0 chr9 54399655 54400206 -63462421 + MER41A LTR ERV1 1 554 0 324 152 76 67 chr9 54400397 54400502 -63462125 - Charlie7 DNA MER1_type 0 2612 2507 272 272 63 50 chr9 54400657 54400900 -63461727 - Charlie7 DNA MER1_type -2311 301 27 410 267 178 0 chr9 54400949 54401095 -63461532 + MER5A DNA MER1_type 17 188 -1 191 338 62 12 chr9 54401931 54402011 -63460616 - L2 LINE L2 -61 3211 3128 624 238 146 4 chr9 54403339 54403512 -63459115 - MIR SINE MIR -62 146 16 227 267 50 0 chr9 54403712 54403772 -63458855 + MER94 DNA DNA 1 63 -71 306 0 0 0 chr9 54403772 54403806 -63458821 + (TG)n Simple_repeat Simple_repeat 1 34 0 436 241 0 0 chr9 54404652 54404735 -63457892 + MER94 DNA DNA 51 133 -1 193 244 0 0 chr9 54404841 54404886 -63457741 + L2 LINE L2 3267 3311 -2 2211 100 0 32 chr9 54406513 54406824 -63455803 - AluSc SINE Alu -8 301 1 472 271 21 21 chr9 54408926 54409066 -63453561 + MER5B DNA MER1_type 3 142 -36 308 347 35 29 chr9 54409130 54409300 -63453327 - MER5B DNA MER1_type -6 172 2 1192 114 6 0 chr9 54409411 54409578 -63453049 - AluSq SINE Alu -13 300 133 716 137 0 48 chr9 54410649 54410773 -63451854 - FLAM_C SINE Alu -8 135 18 27 29 0 0 chr9 54411307 54411341 -63451286 + AT_rich Low_complexity Low_complexity 1 34 0 2327 99 3 0 chr9 54411341 54411644 -63450983 - AluSq SINE Alu -9 304 1 637 117 29 8 chr9 54412869 54413021 -63449606 - Charlie5 DNA MER1_type -62 2550 2354 296 120 0 0 chr9 54413035 54413085 -63449542 - AluSp SINE Alu -3 300 251 1311 100 6 0 chr9 54413088 54413258 -63449369 - AluSp SINE Alu -110 203 33 673 210 51 0 chr9 54413258 54413395 -63449232 - MER33 DNA MER1_type -247 77 1 233 244 221 0 chr9 54413743 54413829 -63448798 + MIR SINE MIR 110 214 -48 3415 145 30 42 chr9 54413932 54414601 -63448026 + L1MB8 LINE L1 5516 6176 -2 2227 119 0 0 chr9 54414750 54415052 -63447575 + AluSg SINE Alu 7 308 -2 341 264 136 18 chr9 54415259 54415369 -63447258 + L2 LINE L2 3139 3261 -11 1453 106 5 0 chr9 54416287 54416485 -63446142 - AluSx SINE Alu 0 312 114 838 101 0 0 chr9 54416531 54416640 -63445987 - AluSx SINE Alu -203 109 1 279 268 80 18 chr9 54416646 54416758 -63445869 - L2 LINE L2 -3 3269 3151 2404 85 0 0 chr9 54416929 54417224 -63445403 - AluSx SINE Alu -17 295 1 25 0 0 0 chr9 54417869 54417894 -63444733 + AT_rich Low_complexity Low_complexity 1 25 0 2240 138 0 0 chr9 54418354 54418666 -63443961 + AluSx SINE Alu 1 312 0 594 235 112 18 chr9 54418714 54418884 -63443743 - MER20 DNA MER1_type -8 211 26 1461 185 22 13 chr9 54418978 54419052 -63443575 - MER33 DNA MER1_type -2269 316 244 2112 134 0 13 chr9 54419052 54419365 -63443262 + AluSx SINE Alu 2 310 -2 1461 185 22 13 chr9 54419365 54419603 -63443024 - MER33 DNA MER1_type -2341 244 1 249 190 103 52 chr9 54419717 54419833 -63442794 + L1ME4a LINE L1 5845 5966 -155 2009 139 0 20 chr9 54419961 54420262 -63442365 - AluSx SINE Alu -17 295 1 239 224 0 0 chr9 54420375 54420424 -63442203 + MER5B DNA MER1_type 1 49 -129 308 137 0 0 chr9 54420442 54420493 -63442134 + Alu SINE Alu 242 292 -10 424 261 139 0 chr9 54420506 54420621 -63442006 + MER5B DNA MER1_type 46 176 -2 1067 138 15 12 chr9 54423022 54423352 -63439275 - L1MB4 LINE L1 -24 6156 5746 1671 158 0 82 chr9 54424193 54424522 -63438105 + AluJb SINE Alu 1 302 -10 22 56 0 0 chr9 54424533 54424569 -63438058 + AT_rich Low_complexity Low_complexity 1 36 0 341 235 12 35 chr9 54424738 54424823 -63437804 + MER5B DNA MER1_type 94 176 -2 225 128 0 0 chr9 54425846 54425893 -63436734 + (T)n Simple_repeat Simple_repeat 1 47 0 302 263 107 80 chr9 54426383 54426721 -63435906 - L1MC4 LINE L1 -3 8039 7693 251 286 109 34 chr9 54426806 54426925 -63435702 + MIR3 SINE MIR 44 171 -37 237 284 14 14 chr9 54427525 54427599 -63435028 + CT-rich Low_complexity Low_complexity 1 74 0 201 133 0 0 chr9 54427597 54427627 -63435000 + (TTCA)n Simple_repeat Simple_repeat 2 31 0 * 2121 131 3 0 chr9 54428549 54428846 -63433781 - AluSx SINE Alu -14 298 1 327 281 58 59 chr9 54428856 54429100 -63433527 - L1MD1 LINE L1 -286 5884 5683 296 213 112 121 chr9 54429140 54429292 -63433335 - L1MC4 LINE L1 0 8042 7893 1796 167 10 3 chr9 54429292 54429585 -63433042 - AluSx SINE Alu -17 295 1 296 213 112 121 chr9 54429585 54429737 -63432890 - L1MC4 LINE L1 -149 7893 7741 381 285 86 32 chr9 54429749 54429935 -63432692 - L1MD1 LINE L1 -2199 5609 5414 22 35 0 0 chr9 54430206 54430235 -63432392 + AT_rich Low_complexity Low_complexity 1 29 0 265 278 42 67 chr9 54430651 54430773 -63431854 - MIR SINE MIR -90 118 20 421 316 123 24 chr9 54430824 54431321 -63431306 - L1ME4a LINE L1 -263 5858 5313 2194 104 47 0 chr9 54432652 54432951 -63429676 - AluSq SINE Alu 0 313 1 917 328 92 22 chr9 54434694 54435096 -63427531 - MER115 DNA AcHobo -258 435 6 2253 106 17 3 chr9 54435575 54435877 -63426750 + AluSc SINE Alu 1 306 -3 1157 206 68 101 chr9 54436335 54436733 -63425894 + MLT1C LTR MaLR 6 390 0 344 250 0 48 chr9 54437028 54437132 -63425495 - MIR SINE MIR -108 154 56 592 259 15 0 chr9 54437812 54437943 -63424684 + MER94 DNA DNA 1 133 -1 180 246 148 0 chr9 54438237 54438298 -63424329 + L2 LINE L2 3242 3311 -2 2098 80 4 4 chr9 54438566 54438840 -63423787 - AluSx SINE Alu -4 308 35 186 43 0 0 chr9 54440113 54440136 -63422491 + (T)n Simple_repeat Simple_repeat 1 23 0 1769 134 4 0 chr9 54440140 54440387 -63422240 - AluSx SINE Alu -64 248 1 12759 184 33 52 chr9 54440922 54446434 -63416193 + L1MA4A LINE L1 1 5407 -1441 1724 184 3 23 chr9 54446434 54446744 -63415883 + AluJo SINE Alu 1 304 -8 6297 132 28 5 chr9 54446744 54447859 -63414768 + L1MA4A LINE L1 5864 7002 -3 2029 124 3 3 chr9 54448158 54448440 -63414187 + AluSx SINE Alu 1 282 -30 209 336 130 23 chr9 54449009 54449140 -63413487 + MER5A DNA MER1_type 2 146 -43 2310 63 3 35 chr9 54449233 54449550 -63413077 - AluY SINE Alu -4 307 1 248 306 108 18 chr9 54449965 54450076 -63412551 - L2 LINE L2 -3 3310 3190 381 271 194 0 chr9 54450698 54450853 -63411774 - MER113 DNA MER1_type? -335 186 2 1980 131 3 14 chr9 54451327 54451617 -63411010 + AluSx SINE Alu 1 287 -25 289 271 105 8 chr9 54452587 54452720 -63409907 + MIR SINE MIR 47 192 -70 280 282 28 84 chr9 54454176 54454278 -63408349 + MIR SINE MIR 48 141 -121 3064 100 21 5 chr9 54454278 54454699 -63407928 - MSTA LTR MaLR 0 428 1 280 282 28 84 chr9 54454699 54454738 -63407889 + MIR SINE MIR 141 181 -81 655 228 12 6 chr9 54454738 54454900 -63407727 - Zaphod DNA AcHobo -580 3451 3289 * 1410 279 52 20 chr9 54454892 54455351 -63407276 - Zaphod DNA AcHobo -3354 677 204 2375 97 0 3 chr9 54456872 54457180 -63405447 + AluSq SINE Alu 1 307 -6 1442 120 65 5 chr9 54457205 54457422 -63405205 + MER30 DNA MER1_type 1 230 0 1670 197 70 59 chr9 54457998 54458454 -63404173 - MLT1C LTR MaLR 0 467 7 561 170 31 160 chr9 54458454 54458595 -63404032 - MLT1C-int LTR MaLR -7 1364 1207 1540 172 7 38 chr9 54458595 54458885 -63403742 + AluJb SINE Alu 1 281 -31 561 170 31 160 chr9 54458885 54458969 -63403658 - MLT1C-int LTR MaLR -164 1207 1207 2496 79 0 0 chr9 54458969 54459273 -63403354 + AluY SINE Alu 1 304 -7 561 170 31 160 chr9 54459273 54459327 -63403300 - MLT1C-int LTR MaLR -164 1207 1148 733 150 90 60 chr9 54459532 54459699 -63402928 - MER58B DNA MER1_type -2 339 168 247 289 21 62 chr9 54459728 54459825 -63402802 - MER58B DNA MER1_type -245 96 4 3136 89 5 0 chr9 54461218 54461644 -63400983 + MSTA LTR MaLR 1 428 0 599 229 34 39 chr9 54462003 54462182 -63400445 - MER5B DNA MER1_type 0 178 1 2172 96 0 14 chr9 54462683 54462965 -63399662 + AluSx SINE Alu 13 290 -22 756 120 0 0 chr9 54464116 54464249 -63398378 + AluSg/x SINE Alu 175 307 0 1416 129 48 24 chr9 54464707 54464773 -63397854 - L1PB4 LINE L1 -13 6143 6080 2097 144 7 0 chr9 54464773 54465079 -63397548 - AluSx SINE Alu -4 308 1 1416 129 48 24 chr9 54465079 54465260 -63397367 - L1PB4 LINE L1 -76 6080 5890 2277 113 0 7 chr9 54465369 54465679 -63396948 - AluSx SINE Alu -4 308 1 2032 161 10 3 chr9 54466903 54467213 -63395414 + AluJb SINE Alu 1 312 0 207 0 0 0 chr9 54467495 54467518 -63395109 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 2004 133 4 0 chr9 54468085 54468363 -63394264 - AluSx SINE Alu -33 279 1 1897 141 21 3 chr9 54468824 54469115 -63393512 - AluJb SINE Alu -5 307 12 249 261 84 21 chr9 54469384 54469526 -63393101 + L2 LINE L2 2860 3010 -262 * 278 267 22 22 chr9 54469512 54469602 -63393025 + L2 LINE L2 3175 3264 -49 2651 53 0 0 chr9 54469895 54470199 -63392428 + AluY SINE Alu 1 304 -7 211 239 0 0 chr9 54471244 54471290 -63391337 + L2 LINE L2 3139 3184 -88 432 350 16 6 chr9 54471362 54471545 -63391082 - MIR SINE MIR -73 189 5 23 0 0 0 chr9 54472442 54472465 -63390162 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr9 54473719 54473753 -63388874 + AT_rich Low_complexity Low_complexity 1 34 0 1307 96 17 6 chr9 54474280 54474457 -63388170 + AluSg/x SINE Alu 109 287 -25 1792 175 50 23 chr9 54474462 54474861 -63387766 + L1MB8 LINE L1 5769 6178 0 1246 281 89 53 chr9 54474863 54474997 -63387630 - L1MC4 LINE L1 -576 7466 7338 606 89 0 0 chr9 54474997 54475076 -63387551 + MADE1 DNA Mariner 1 79 -1 1246 281 89 53 chr9 54475076 54475309 -63387318 - L1MC4 LINE L1 -704 7338 7115 3191 143 58 9 chr9 54475309 54475874 -63386753 + L1MB3 LINE L1 5590 6182 -1 1246 281 89 53 chr9 54475874 54476491 -63386136 - L1MC4 LINE L1 -927 7115 6445 1819 111 26 81 chr9 54476790 54477097 -63385530 + AluSx SINE Alu 1 290 -22 1439 140 64 45 chr9 54477977 54478120 -63384507 + MER33 DNA MER1_type 5 144 -2441 2412 79 0 0 chr9 54478120 54478411 -63384216 - AluSc SINE Alu -18 291 1 1439 140 64 45 chr9 54478411 54478503 -63384124 + MER33 DNA MER1_type 144 233 -2352 1755 147 0 73 chr9 54478503 54478830 -63383797 - AluJo SINE Alu -9 303 1 1439 140 64 45 chr9 54478830 54478907 -63383720 + MER33 DNA MER1_type 233 324 0 189 147 0 0 chr9 54479209 54479243 -63383384 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 24 0 0 0 chr9 54479591 54479615 -63383012 + AT_rich Low_complexity Low_complexity 1 24 0 2424 85 0 10 chr9 54479840 54480147 -63382480 + AluSc SINE Alu 1 304 -5 207 0 0 0 chr9 54480236 54480259 -63382368 + (TC)n Simple_repeat Simple_repeat 2 24 0 1775 101 37 122 chr9 54480827 54481154 -63381473 + AluSq SINE Alu 1 299 -14 2513 211 133 18 chr9 54481593 54482801 -63379826 + L1MDa LINE L1 1 1331 -5107 2287 98 10 0 chr9 54482801 54483098 -63379529 + AluY SINE Alu 1 300 -11 2513 211 133 18 chr9 54483098 54483125 -63379502 + L1MDa LINE L1 1331 1354 -5084 4691 163 74 20 chr9 54483134 54483553 -63379074 + L1MD1 LINE L1 5177 5572 -670 2355 102 3 0 chr9 54483553 54483847 -63378780 + AluSx SINE Alu 1 295 -17 4691 163 74 20 chr9 54483847 54484438 -63378189 + L1MD1 LINE L1 5572 6242 0 2209 117 17 0 chr9 54484490 54484790 -63377837 + AluSq SINE Alu 1 305 -8 2182 92 11 0 chr9 54484931 54485239 -63377388 - AluSx SINE Alu 0 311 1 235 301 12 24 chr9 54486188 54486271 -63376356 - MIR SINE MIR -22 240 159 274 322 8 16 chr9 54486283 54486404 -63376223 - L2 LINE L2 0 3313 3194 2333 113 3 0 chr9 54486404 54486715 -63375912 - AluSp SINE Alu 0 313 2 367 294 84 0 chr9 54486739 54486858 -63375769 - MIR SINE MIR -123 139 11 390 121 0 0 chr9 54487035 54487101 -63375526 + (TATATG)n Simple_repeat Simple_repeat 6 71 0 201 266 62 16 chr9 54487132 54487196 -63375431 - L2 LINE L2 -1 3312 3246 186 233 0 0 chr9 54488090 54488133 -63374494 + L2 LINE L2 3017 3059 -213 484 191 110 63 chr9 54489221 54489431 -63373196 - MLT1J2 LTR MaLR -5 449 269 2159 130 0 0 chr9 54489708 54490036 -63372591 + AluSx SINE Alu 1 328 0 501 227 57 7 chr9 54490209 54490350 -63372277 + MER103 DNA DNA 7 154 -12 2045 118 17 7 chr9 54490588 54490885 -63371742 + AluSx SINE Alu 1 300 -12 180 0 0 0 chr9 54491761 54491781 -63370846 + (TA)n Simple_repeat Simple_repeat 2 21 0 2425 91 3 0 chr9 54491781 54492088 -63370539 - AluSx SINE Alu -4 308 1 5986 220 29 19 chr9 54492175 54493860 -63368767 - L1 LINE L1 -2689 3639 1890 3012 166 15 23 chr9 54493861 54494470 -63368157 + pTR5 LTR ERV1 743 1346 -1092 6748 175 35 14 chr9 54494473 54494484 -63368143 - L1 LINE L1 -4065 1263 1254 4069 150 61 61 chr9 54494484 54495306 -63367321 + LTR12 LTR ERV1 5 826 0 6748 175 35 14 chr9 54495306 54496742 -63365885 - L1 LINE L1 -4074 1254 14 196 382 89 0 chr9 54497273 54497396 -63365231 - MIR SINE MIR -50 212 79 1408 196 52 0 chr9 54497457 54497707 -63364920 + Tigger7 DNA MER2_type 1 263 -287 564 175 10 48 chr9 54497707 54497721 -63364906 + Tigger7 DNA MER2_type 2389 2402 -85 15208 126 27 9 chr9 54497721 54500095 -63362532 + Tigger1 DNA MER2_type 1 2416 -2 564 175 10 48 chr9 54500095 54500183 -63362444 + Tigger7 DNA MER2_type 2402 2487 0 340 236 107 51 chr9 54500279 54500457 -63362170 - HAL1 LINE L1 -266 2241 2054 812 279 72 20 chr9 54500468 54500996 -63361631 - HAL1 LINE L1 -492 2015 1420 362 264 47 0 chr9 54501002 54501108 -63361519 - HAL1 LINE L1 -1116 1391 1281 * 40201 37 3 9 chr9 54501107 54506777 -63355850 + L1PA4 LINE L1 521 6155 0 794 272 176 64 chr9 54506782 54507431 -63355196 - HAL1 LINE L1 -1221 1286 711 1727 182 33 0 chr9 54507431 54507733 -63354894 - AluSx SINE Alu 0 312 1 794 272 176 64 chr9 54507733 54508200 -63354427 - HAL1 LINE L1 -1796 711 45 233 275 0 0 chr9 54508706 54508786 -63353841 - L1MC/D LINE L1 -2558 5437 5358 273 303 108 43 chr9 54508835 54509020 -63353607 + MER115 DNA AcHobo 74 270 -423 4702 187 20 34 chr9 54509742 54511327 -63351300 - L1MB7 LINE L1 -124 6060 4506 1751 192 3 0 chr9 54511327 54511629 -63350998 - AluJb SINE Alu -5 307 5 4702 187 20 34 chr9 54511629 54511795 -63350832 - L1MB7 LINE L1 -1678 4506 4339 1590 202 31 17 chr9 54511795 54511989 -63350638 - MLT1A2 LTR MaLR 0 374 171 270 0 0 0 chr9 54511989 54512019 -63350608 + (GA)n Simple_repeat Simple_repeat 1 30 0 1590 202 31 17 chr9 54512019 54512176 -63350451 - MLT1A2 LTR MaLR -203 171 18 855 257 9 0 chr9 54512182 54512404 -63350223 - L1MB7 LINE L1 -1804 4342 4119 2146 125 131 13 chr9 54513771 54514146 -63348481 + MSTA LTR MaLR 1 419 -9 213 39 0 0 chr9 54515416 54515442 -63347185 + (T)n Simple_repeat Simple_repeat 1 26 0 926 287 43 40 chr9 54515886 54516283 -63346344 - MLT1I LTR MaLR -7 402 5 2436 230 83 105 chr9 54516397 54517352 -63345275 + L1M4b LINE L1 1 934 -5925 342 0 0 0 chr9 54517769 54517807 -63344820 + (CA)n Simple_repeat Simple_repeat 2 39 0 2130 244 76 39 chr9 54517926 54518168 -63344459 + L1M4b LINE L1 1190 1422 -5537 212 0 36 0 chr9 54518168 54518196 -63344431 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2130 244 76 39 chr9 54518196 54518875 -63343752 + L1M4b LINE L1 1422 2144 -4815 1220 185 0 5 chr9 54518911 54519122 -63343505 + AluJo SINE Alu 11 220 -92 1965 186 78 32 chr9 54519170 54519644 -63342983 + L1MB8 LINE L1 5515 6010 -168 1674 197 60 67 chr9 54519648 54520099 -63342528 - MLT1C LTR MaLR -16 451 4 719 192 0 30 chr9 54520104 54520271 -63342356 + L1MB8 LINE L1 6016 6177 -1 606 99 0 0 chr9 54520415 54520506 -63342121 + (CA)n Simple_repeat Simple_repeat 2 92 0 1863 175 0 0 chr9 54520507 54520815 -63341812 + AluJo SINE Alu 1 308 -4 2128 96 3 11 chr9 54522087 54522369 -63340258 - AluSg SINE Alu -30 280 1 300 314 83 0 chr9 54523289 54523410 -63339217 + MIR SINE MIR 56 186 -76 270 191 29 86 chr9 54523495 54523600 -63339027 - MER5A DNA MER1_type -80 109 11 1617 219 75 23 chr9 54524284 54524723 -63337904 - MLT1C LTR MaLR 0 467 6 315 113 0 0 chr9 54525497 54525550 -63337077 - L1MB3 LINE L1 -4 6179 6127 1210 133 0 0 chr9 54525551 54525724 -63336903 - AluSg/x SINE Alu -9 303 131 435 104 19 0 chr9 54525724 54525801 -63336826 - L1MB4 LINE L1 -45 6135 6043 483 202 39 0 chr9 54526167 54526271 -63336356 - MER53 DNA DNA -65 124 17 * 499 149 43 11 chr9 54526183 54526277 -63336350 + MER53 DNA DNA 92 188 -1 237 196 0 0 chr9 54527559 54527615 -63335012 + CT-rich Low_complexity Low_complexity 1 56 0 37 76 0 0 chr9 54527971 54528050 -63334577 + AT_rich Low_complexity Low_complexity 1 79 0 282 320 121 39 chr9 54528538 54528744 -63333883 + MIR SINE MIR 2 224 -38 21 36 0 0 chr9 54528758 54528786 -63333841 + AT_rich Low_complexity Low_complexity 1 28 0 2208 163 161 62 chr9 54529267 54529862 -63332765 + MLT1E1 LTR MaLR 1 654 0 316 231 50 25 chr9 54530051 54530172 -63332455 - LTR67 LTR ERVL -6 551 428 180 0 0 0 chr9 54530210 54530230 -63332397 + (A)n Simple_repeat Simple_repeat 1 20 0 260 196 144 72 chr9 54531337 54531421 -63331206 - L2 LINE L2 0 3313 3220 1658 203 24 51 chr9 54531421 54531641 -63330986 - MLT1A1 LTR MaLR 0 365 158 1596 161 13 38 chr9 54531641 54531958 -63330669 - AluJo SINE Alu -3 309 1 1658 203 24 51 chr9 54531958 54532112 -63330515 - MLT1A1 LTR MaLR -207 158 1 260 196 144 72 chr9 54532112 54532124 -63330503 - L2 LINE L2 -93 3220 3210 639 138 22 0 chr9 54532139 54532277 -63330350 + (CA)n Simple_repeat Simple_repeat 1 141 0 223 295 76 29 chr9 54533571 54533676 -63328951 - MIR SINE MIR -59 149 40 853 247 132 49 chr9 54533733 54533750 -63328877 + MER82 DNA MER2_type 341 355 -298 2694 99 3 0 chr9 54533750 54534112 -63328515 - THE1B LTR MaLR -1 363 1 853 247 132 49 chr9 54534112 54534381 -63328246 + MER82 DNA MER2_type 355 651 -2 1846 169 14 53 chr9 54535489 54535850 -63326777 - MER7A DNA MER2_type 0 346 2 2036 153 31 17 chr9 54536216 54536576 -63326051 - MER47A DNA MER2_type -1 365 1 784 257 44 10 chr9 54536581 54536787 -63325840 - MER58A DNA MER1_type -3 221 9 1275 281 27 8 chr9 54536873 54537281 -63325346 + MLT1J2 LTR MaLR 2 416 -34 2092 94 72 0 chr9 54537583 54537860 -63324767 + AluSx SINE Alu 1 297 -15 757 279 77 45 chr9 54538027 54538403 -63324224 - MLT1J2 LTR MaLR -30 420 33 1383 165 13 98 chr9 54539080 54539396 -63323231 - AluJo SINE Alu -23 289 1 752 271 76 79 chr9 54540157 54540725 -63321902 - MLT2F LTR ERVL -93 570 5 1513 173 0 29 chr9 54540832 54541110 -63321517 - AluJo SINE Alu -17 295 26 849 287 66 18 chr9 54541549 54541991 -63320636 - L1MEd LINE L1 -3425 2704 2242 1955 152 3 3 chr9 54542440 54542737 -63319890 - AluSx SINE Alu -15 297 1 254 265 10 49 chr9 54542760 54542862 -63319765 - L1MEd LINE L1 -6020 99 2 21 0 0 0 chr9 54543098 54543119 -63319508 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 54543215 54543236 -63319391 + AT_rich Low_complexity Low_complexity 1 21 0 2397 109 19 21 chr9 54543315 54543691 -63318936 - THE1C LTR MaLR 0 375 1 23 65 0 16 chr9 54543701 54543727 -63318900 + AT_rich Low_complexity Low_complexity 1 26 -35 1363 115 37 25 chr9 54543727 54543811 -63318816 + L1MA8 LINE L1 6040 6121 -170 2345 104 3 0 chr9 54543811 54544119 -63318508 + AluSx SINE Alu 1 309 -3 1363 115 37 25 chr9 54544119 54544277 -63318350 + L1MA8 LINE L1 6121 6285 -6 23 65 0 16 chr9 54544277 54544312 -63318315 + AT_rich Low_complexity Low_complexity 26 61 0 255 198 47 66 chr9 54544829 54544935 -63317692 + L2 LINE L2 2245 2348 -966 1910 151 7 0 chr9 54545185 54545470 -63317157 - AluJb SINE Alu -25 287 1 1322 200 44 134 chr9 54545744 54546250 -63316377 + L1MC4 LINE L1 7596 7995 0 2127 125 0 3 chr9 54546259 54546556 -63316071 + AluSx SINE Alu 1 296 -16 371 271 34 108 chr9 54546897 54547166 -63315461 - MLT1I LTR MaLR 0 409 161 297 167 0 0 chr9 54547166 54547220 -63315407 + CT-rich Low_complexity Low_complexity 2 55 0 212 244 0 0 chr9 54547222 54547263 -63315364 + polypyrimidine Low_complexity Low_complexity 1 41 0 1825 156 17 3 chr9 54547263 54547564 -63315063 - AluSx SINE Alu -7 305 1 232 339 41 41 chr9 54548019 54548140 -63314487 - L2 LINE L2 -29 3243 3123 211 270 159 24 chr9 54548473 54548599 -63314028 - MIR3 SINE MIR -63 145 3 193 193 211 0 chr9 54549118 54549175 -63313452 + MIR SINE MIR 182 250 -12 305 250 30 0 chr9 54549185 54549285 -63313342 + (TAA)n Simple_repeat Simple_repeat 1 103 0 339 216 0 0 chr9 54549372 54549446 -63313181 + L1MC1 LINE L1 6254 6327 -6 2327 92 0 0 chr9 54549458 54549750 -63312877 - AluSg SINE Alu -18 292 1 198 0 0 0 chr9 54549754 54549776 -63312851 + (T)n Simple_repeat Simple_repeat 1 22 0 432 221 21 11 chr9 54549810 54549905 -63312722 - MER97b DNA MER1_type? -956 97 2 1502 163 93 0 chr9 54551178 54551436 -63311191 + AluJo SINE Alu 15 296 -16 25 0 0 0 chr9 54551438 54551463 -63311164 + AT_rich Low_complexity Low_complexity 1 25 0 273 271 93 53 chr9 54552286 54552437 -63310190 - L2 LINE L2 -25 3247 3108 405 39 0 0 chr9 54553751 54553802 -63308825 + (CA)n Simple_repeat Simple_repeat 2 52 0 232 290 16 0 chr9 54555155 54555217 -63307410 + Charlie8 DNA MER1_type 2355 2417 0 278 214 14 14 chr9 54555641 54555711 -63306916 - Charlie1 DNA MER1_type -9 2752 2683 473 217 147 16 chr9 54556030 54556190 -63306437 + MER5A DNA MER1_type 4 187 -2 625 226 18 6 chr9 54556204 54556372 -63306255 - MER5B DNA MER1_type -4 174 5 420 251 69 80 chr9 54556386 54556448 -63306179 - MER5B DNA MER1_type -4 174 113 2667 45 0 3 chr9 54556448 54556760 -63305867 + AluY SINE Alu 1 311 0 420 251 69 80 chr9 54556760 54556872 -63305755 - MER5B DNA MER1_type -65 113 2 2310 93 0 0 chr9 54558223 54558523 -63304104 + AluY SINE Alu 1 300 -11 196 302 54 103 chr9 54559430 54559761 -63302866 + L2 LINE L2 2919 3233 -39 2345 93 0 0 chr9 54560304 54560594 -63302033 + AluSx SINE Alu 1 290 -22 198 103 0 0 chr9 54561537 54561566 -63301061 + (TG)n Simple_repeat Simple_repeat 2 30 0 317 205 24 12 chr9 54562246 54562329 -63300298 + L1M4 LINE L1 4617 4700 -1446 1617 97 0 42 chr9 54562842 54563080 -63299547 + AluSc SINE Alu 74 301 -8 26 74 0 0 chr9 54564221 54564275 -63298352 + AT_rich Low_complexity Low_complexity 1 54 0 627 227 69 45 chr9 54565388 54565635 -63296992 + MER112 DNA MER1_type 1 253 -3 22 56 0 0 chr9 54568202 54568238 -63294389 + AT_rich Low_complexity Low_complexity 1 36 0 249 57 0 0 chr9 54568664 54568699 -63293928 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 270 0 0 0 chr9 54570057 54570087 -63292540 + (TTA)n Simple_repeat Simple_repeat 1 30 0 43347 41 6 4 chr9 54570087 54573141 -63289486 - L1PA4 LINE L1 -13 6142 3097 2487 56 7 0 chr9 54573141 54573445 -63289182 - AluY SINE Alu -5 306 1 43347 41 6 4 chr9 54573445 54576521 -63286106 - L1PA4 LINE L1 -3058 3097 1 24 0 0 0 chr9 54576942 54576966 -63285661 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr9 54577190 54577218 -63285409 + AT_rich Low_complexity Low_complexity 1 28 0 256 313 25 12 chr9 54577675 54577755 -63284872 + (CATG)n Simple_repeat Simple_repeat 2 82 0 2046 132 10 0 chr9 54578110 54578406 -63284221 + AluSx SINE Alu 1 299 -13 1088 240 80 3 chr9 54579007 54579357 -63283270 + L1MC4a LINE L1 2657 3033 -3113 315 276 129 52 chr9 54580295 54580527 -63282100 + L1MC4a LINE L1 5657 5906 -1902 284 286 167 36 chr9 54582398 54582650 -63279977 + L3b LINE CR1 1124 1408 -175 1600 151 96 10 chr9 54582767 54583079 -63279548 - MER44D DNA MER2_type 0 609 1 350 369 32 9 chr9 54583224 54583441 -63279186 + L1MC4a LINE L1 4344 4565 -1581 405 0 0 0 chr9 54583452 54583497 -63279130 + (CA)n Simple_repeat Simple_repeat 2 46 0 255 245 29 20 chr9 54583661 54583763 -63278864 + L1MC4a LINE L1 4744 4846 -1300 413 271 42 100 chr9 54583906 54583983 -63278644 + L1MC4a LINE L1 4984 5064 -1107 2372 64 10 13 chr9 54583983 54584281 -63278346 - AluY SINE Alu -14 297 1 413 271 42 100 chr9 54584281 54584664 -63277963 + L1MC4a LINE L1 5064 5426 -745 632 213 134 6 chr9 54584668 54584926 -63277701 + L1MC4a LINE L1 5606 5819 -302 219 36 0 0 chr9 54585617 54585645 -63276982 + (T)n Simple_repeat Simple_repeat 1 28 0 3142 3 0 0 chr9 54585646 54585996 -63276631 - L1HS LINE L1 0 6155 5806 226 363 11 0 chr9 54586296 54586387 -63276240 - MIR3 SINE MIR -7 201 110 2188 99 0 7 chr9 54587538 54587832 -63274795 + AluSg SINE Alu 1 292 -18 447 264 80 60 chr9 54589121 54589169 -63273458 - MIR SINE MIR -3 259 213 12493 115 42 82 chr9 54589169 54590475 -63272152 + Tigger1 DNA MER2_type 1 1358 -1060 1711 177 0 11 chr9 54590475 54590758 -63271869 + AluJb SINE Alu 16 295 -17 2111 107 13 7 chr9 54590760 54591060 -63271567 + AluSx SINE Alu 2 303 -9 12493 115 42 82 chr9 54591060 54592270 -63270357 + Tigger1 DNA MER2_type 1359 2418 0 447 264 80 60 chr9 54592270 54592471 -63270156 - MIR SINE MIR -49 213 5 255 296 23 76 chr9 54592818 54592950 -63269677 + L2 LINE L2 3189 3313 0 1044 152 0 0 chr9 54593984 54594129 -63268498 + FRAM SINE Alu 1 145 -31 257 0 0 29 chr9 54594129 54594163 -63268464 + (CAA)n Simple_repeat Simple_repeat 1 33 0 22 70 0 0 chr9 54594285 54594328 -63268299 + AT_rich Low_complexity Low_complexity 1 43 0 1712 162 20 10 chr9 54595222 54595518 -63267109 + AluJo SINE Alu 1 299 -13 2496 55 10 7 chr9 54597823 54598131 -63264496 + AluY SINE Alu 1 309 -2 21 0 0 0 chr9 54598214 54598235 -63264392 + AT_rich Low_complexity Low_complexity 1 21 0 22 94 0 0 chr9 54599650 54599714 -63262913 + AT_rich Low_complexity Low_complexity 1 64 0 297 0 0 0 chr9 54600162 54600195 -63262432 + (CAT)n Simple_repeat Simple_repeat 3 35 0 23 0 0 0 chr9 54600596 54600619 -63262008 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr9 54602651 54602674 -63259953 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr9 54602858 54602890 -63259737 + AT_rich Low_complexity Low_complexity 1 32 0 372 316 30 83 chr9 54603084 54603457 -63259170 - L1M4 LINE L1 -1981 4165 3813 622 209 198 6 chr9 54603506 54603688 -63258939 + AluJb SINE Alu 89 305 -7 2020 169 3 12 chr9 54603813 54604151 -63258476 + MER1B DNA MER1_type 2 336 -1 6921 220 61 58 chr9 54604187 54604217 -63258410 + L1M4 LINE L1 2159 2187 -3959 2321 90 3 6 chr9 54604217 54604528 -63258099 + AluSg SINE Alu 1 310 0 6921 220 61 58 chr9 54604528 54605153 -63257474 + L1M4 LINE L1 2187 2809 -3337 2271 97 7 10 chr9 54605153 54605287 -63257340 + AluSx SINE Alu 1 134 -178 2398 77 3 0 chr9 54605287 54605587 -63257040 + AluSp SINE Alu 1 301 -12 2271 97 7 10 chr9 54605587 54605761 -63256866 + AluSx SINE Alu 134 308 -4 6921 220 61 58 chr9 54605761 54607338 -63255289 + L1M4 LINE L1 2809 4402 -1744 2575 14 0 0 chr9 54607338 54607623 -63255004 + AluYb8 SINE Alu 31 315 -3 6921 220 61 58 chr9 54607623 54607873 -63254754 + L1M4 LINE L1 4402 4650 -1496 2729 268 85 20 chr9 54607879 54609047 -63253580 + L2 LINE L2 2052 3307 -6 367 316 34 11 chr9 54609093 54609356 -63253271 - L1M4 LINE L1 -3542 2604 2336 2565 181 96 2 chr9 54610162 54610664 -63251963 + MER44D DNA MER2_type 1 604 -1 12216 29 0 0 chr9 54610947 54612410 -63250217 - L1PA2 LINE L1 -762 5384 3922 6467 18 8 0 chr9 54612410 54613170 -63249457 + L1PA2 LINE L1 5387 6155 0 1670 147 125 25 chr9 54613226 54613586 -63249041 + MSTD LTR MaLR 1 396 0 2383 198 50 15 chr9 54614619 54615140 -63247487 + Tigger6 DNA MER2_type 1050 1588 -9 1967 128 17 0 chr9 54615678 54615975 -63246652 - AluSx SINE Alu -10 302 1 285 314 99 16 chr9 54616111 54616232 -63246395 - MIR SINE MIR -58 150 20 25 51 0 0 chr9 54616415 54616454 -63246173 + AT_rich Low_complexity Low_complexity 1 39 0 27 49 0 0 chr9 54618351 54618392 -63244235 + AT_rich Low_complexity Low_complexity 1 41 0 1340 182 189 19 chr9 54618426 54618739 -63243888 + MER47A DNA MER2_type 1 366 0 23 33 0 0 chr9 54619084 54619114 -63243513 + AT_rich Low_complexity Low_complexity 1 30 0 272 286 162 32 chr9 54619524 54619678 -63242949 - L3 LINE CR1 -864 713 540 2398 288 53 50 chr9 54619964 54620375 -63242252 + L1ME2 LINE L1 11 419 -6440 2285 94 3 3 chr9 54620375 54620682 -63241945 - AluSx SINE Alu -4 308 2 2398 288 53 50 chr9 54620682 54621200 -63241427 + L1ME2 LINE L1 419 943 -5916 1313 119 0 44 chr9 54621210 54621436 -63241191 + AluSg/x SINE Alu 96 311 -1 1820 232 46 36 chr9 54621438 54623537 -63239090 + L1ME2 LINE L1 4661 6762 -213 734 199 43 0 chr9 54623562 54623714 -63238913 + L1MB7 LINE L1 6008 6175 -9 25 31 0 0 chr9 54624064 54624096 -63238531 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr9 54624118 54624139 -63238488 + AT_rich Low_complexity Low_complexity 1 21 0 405 277 36 26 chr9 54624429 54624624 -63238003 + L1ME3A LINE L1 5699 5895 -275 2063 108 7 0 chr9 54624994 54625280 -63237347 - AluSx SINE Alu -13 299 12 235 203 51 34 chr9 54625731 54625790 -63236837 + MER5A DNA MER1_type 35 94 -95 2333 90 0 0 chr9 54626573 54626874 -63235753 + AluSx SINE Alu 3 303 -9 2213 107 10 0 chr9 54627480 54627789 -63234838 - AluSx SINE Alu 0 312 1 3546 279 113 43 chr9 54628261 54630156 -63232471 - L2 LINE L2 -4 3309 1299 22 35 0 0 chr9 54631654 54631683 -63230944 + AT_rich Low_complexity Low_complexity 1 29 0 1960 95 4 0 chr9 54632940 54633204 -63229423 - AluSg SINE Alu -11 299 35 753 84 101 8 chr9 54633206 54633325 -63229302 - AluSg SINE Alu -180 130 1 565 308 129 39 chr9 54634008 54634473 -63228154 + HAL1b LINE L1 210 716 -632 2218 119 0 0 chr9 54634883 54635193 -63227434 + AluSx SINE Alu 1 310 -2 1413 115 5 9 chr9 54635315 54635532 -63227095 + L1PA15 LINE L1 5950 6165 0 209 176 0 20 chr9 54635591 54635642 -63226985 + GA-rich Low_complexity Low_complexity 3 52 0 4736 99 25 0 chr9 54636194 54636879 -63225748 - L1PA10 LINE L1 0 6168 5467 1083 159 0 0 chr9 54637184 54637354 -63225273 + AluJb SINE Alu 135 304 -8 1989 177 8 5 chr9 54637484 54637886 -63224741 + L1 LINE L1 4495 4897 -1249 3070 126 11 21 chr9 54638060 54638853 -63223774 + L1P5 LINE L1 4909 5701 -450 377 281 105 9 chr9 54639362 54639592 -63223035 - L1MC4 LINE L1 -48 7945 7670 2470 47 0 7 chr9 54640051 54640351 -63222276 - AluY SINE Alu -13 298 1 1151 178 94 134 chr9 54641555 54642032 -63220595 + MER76 LTR ERV 113 570 -118 2779 114 9 7 chr9 54642032 54642462 -63220165 - Tigger4(Zombi) DNA MER2_type 0 2731 2301 589 122 0 138 chr9 54642456 54642579 -63220048 - Tigger4(Zombi) DNA MER2_type -2625 106 1 * 714 145 43 0 chr9 54642579 54642694 -63219933 + MER76 LTR ERV 569 688 0 450 315 83 51 chr9 54642697 54643011 -63219616 + L2 LINE L2 2990 3313 0 467 281 35 50 chr9 54643029 54643466 -63219161 + L1MEd LINE L1 910 1385 -4882 854 83 8 0 chr9 54643490 54643610 -63219017 - LTR17 LTR ERV1 -454 326 206 22 56 0 0 chr9 54645314 54645350 -63217277 + AT_rich Low_complexity Low_complexity 1 36 0 247 347 109 14 chr9 54645431 54645578 -63217049 + MIR SINE MIR 37 197 -65 534 344 23 23 chr9 54646247 54646465 -63216162 - MIR SINE MIR -38 224 7 1663 154 39 25 chr9 54646555 54646840 -63215787 + AluJo SINE Alu 1 289 -23 2338 51 34 3 chr9 54647730 54648024 -63214603 + AluY SINE Alu 1 303 -8 6743 66 17 0 chr9 54648463 54649501 -63213126 - L1PA7 LINE L1 0 6154 5110 214 245 20 0 chr9 54650930 54650979 -63211648 + L2 LINE L2 3263 3312 -1 28 48 0 0 chr9 54650987 54651029 -63211598 + AT_rich Low_complexity Low_complexity 1 42 0 1520 80 84 0 chr9 54651187 54651400 -63211227 + AluSp SINE Alu 75 305 -8 38 89 0 0 chr9 54652173 54652274 -63210353 + AT_rich Low_complexity Low_complexity 1 101 0 22 35 0 0 chr9 54653144 54653173 -63209454 + AT_rich Low_complexity Low_complexity 1 29 0 610 271 95 67 chr9 54653182 54653777 -63208850 + L1ME LINE L1 5201 5824 -297 1613 163 18 18 chr9 54654512 54654795 -63207832 + AluJb SINE Alu 5 287 -25 225 259 19 0 chr9 54654931 54654985 -63207642 + MIR SINE MIR 47 101 -161 8356 123 45 35 chr9 54655042 54655638 -63206989 + Tigger1 DNA MER2_type 5 594 -1824 2029 137 29 40 chr9 54655638 54656017 -63206610 + THE1C LTR MaLR 1 375 0 8356 123 45 35 chr9 54656017 54657087 -63205540 + Tigger1 DNA MER2_type 594 1774 -644 194 0 0 37 chr9 54657166 54657193 -63205434 + (TAA)n Simple_repeat Simple_repeat 1 26 0 669 270 100 80 chr9 54657562 54658014 -63204613 + L1MEc LINE L1 40 500 -5896 2541 259 130 31 chr9 54658047 54659471 -63203156 + L1MEc LINE L1 799 2363 -4033 1348 173 102 42 chr9 54659479 54659937 -63202690 + MER1B DNA MER1_type 1 329 0 732 203 52 0 chr9 54659990 54660143 -63202484 + AluJb SINE Alu 141 301 -11 1013 232 156 22 chr9 54660154 54660748 -63201879 + L1MEc LINE L1 3762 4455 -1760 276 180 16 0 chr9 54660756 54660817 -63201810 + L1MEc LINE L1 4684 4745 -1470 514 250 142 29 chr9 54660908 54661257 -63201370 + L1MA10 LINE L1 5777 6325 -9 26 0 0 0 chr9 54662174 54662200 -63200427 + AT_rich Low_complexity Low_complexity 1 26 0 207 0 0 0 chr9 54662963 54662986 -63199641 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 583 237 73 17 chr9 54664526 54664703 -63197924 + MIR SINE MIR 2 188 -74 762 153 28 21 chr9 54664966 54665110 -63197517 + L1MC1 LINE L1 6188 6332 -1 207 167 0 0 chr9 54665110 54665152 -63197475 + (TA)n Simple_repeat Simple_repeat 1 42 0 1802 153 10 16 chr9 54665607 54665915 -63196712 - AluJb SINE Alu -6 306 1 23 33 0 0 chr9 54666718 54666748 -63195879 + AT_rich Low_complexity Low_complexity 1 30 0 24 53 0 0 chr9 54667245 54667283 -63195344 + AT_rich Low_complexity Low_complexity 1 38 0 478 340 50 33 chr9 54667392 54667633 -63194994 + MLT1J LTR MaLR 25 269 -242 37 76 0 0 chr9 54668660 54668739 -63193888 + AT_rich Low_complexity Low_complexity 1 79 0 284 299 36 36 chr9 54671058 54671195 -63191432 + MIR SINE MIR 108 244 -18 2442 234 108 43 chr9 54671404 54672112 -63190515 - L1ME2 LINE L1 -8 6156 5382 2271 76 38 0 chr9 54672112 54672403 -63190224 + AluY SINE Alu 1 302 -9 2442 234 108 43 chr9 54672403 54672541 -63190086 - L1ME2 LINE L1 -782 5382 5254 1769 242 125 6 chr9 54672640 54673330 -63189297 - L1ME2 LINE L1 -2974 3172 2401 550 215 64 99 chr9 54673367 54673603 -63189024 + L1MC5 LINE L1 7610 7834 -127 2343 75 3 0 chr9 54673603 54673897 -63188730 + AluY SINE Alu 1 295 -16 550 215 64 99 chr9 54673897 54673972 -63188655 + L1MC5 LINE L1 7834 7910 -51 470 294 62 45 chr9 54674566 54674855 -63187772 - HAL1 LINE L1 -704 1803 1510 1338 145 132 45 chr9 54675102 54675413 -63187214 + MER44D DNA MER2_type 1 608 -1 354 281 70 0 chr9 54675414 54675585 -63187042 - HAL1 LINE L1 -1216 1291 1109 261 210 42 8 chr9 54676590 54676709 -63185918 + GA-rich Low_complexity Low_complexity 2 124 0 807 180 36 0 chr9 54677382 54677521 -63185106 - FRAM SINE Alu -36 140 1 1897 131 24 3 chr9 54677622 54677920 -63184707 + AluSx SINE Alu 1 304 -8 1839 199 21 48 chr9 54677990 54678377 -63184250 + MLT2D LTR ERVL 1 378 -36 399 21 0 0 chr9 54678377 54678425 -63184202 + (CA)n Simple_repeat Simple_repeat 2 49 0 1839 199 21 48 chr9 54678425 54678455 -63184172 + MLT2D LTR ERVL 378 407 -7 2437 73 0 0 chr9 54679589 54679892 -63182735 + AluY SINE Alu 1 303 -8 505 259 0 43 chr9 54680205 54680344 -63182283 + L2 LINE L2 2166 2298 -1016 3357 196 18 78 chr9 54680374 54681404 -63181223 + LTR5 LTR ERVK 1 969 0 210 292 14 42 chr9 54681507 54681579 -63181048 + L2 LINE L2 3142 3211 -61 2277 104 0 3 chr9 54682159 54682458 -63180169 + AluSx SINE Alu 7 304 -8 2229 117 0 0 chr9 54682569 54682869 -63179758 + AluSq SINE Alu 1 300 -13 448 330 84 40 chr9 54683702 54683975 -63178652 + L2 LINE L2 3021 3305 -8 1692 193 7 0 chr9 54684086 54684376 -63178251 - AluJb SINE Alu -19 293 2 300 191 0 164 chr9 54684419 54684571 -63178056 + L1ME LINE L1 5601 5727 -394 5467 72 11 4 chr9 54684732 54685464 -63177163 - L1PA8 LINE L1 -5 6167 5431 3042 82 2 0 chr9 54685464 54685878 -63176749 + L1P LINE L1 4550 4964 -1182 1519 150 11 38 chr9 54685878 54686145 -63176482 - THE1B LTR MaLR -104 260 1 415 348 91 58 chr9 54686357 54686981 -63175646 + L2 LINE L2 2031 2675 -639 224 143 20 20 chr9 54687048 54687097 -63175530 - MIR SINE MIR -83 179 131 * 257 343 0 0 chr9 54687096 54687163 -63175464 + L2 LINE L2 3190 3256 -16 1020 244 31 64 chr9 54687173 54687530 -63175097 + L1MEc LINE L1 35 379 -6017 1294 241 122 6 chr9 54687577 54688116 -63174511 + L1M4 LINE L1 3002 3603 -2543 393 152 22 22 chr9 54688116 54688208 -63174419 + L1MA10 LINE L1 6241 6332 -2 926 209 34 38 chr9 54689859 54690098 -63172529 + AluJo SINE Alu 39 276 -36 1623 160 0 59 chr9 54690624 54690912 -63171715 + AluJo SINE Alu 19 289 -23 29 0 0 0 chr9 54691284 54691313 -63171314 + AT_rich Low_complexity Low_complexity 1 29 0 2925 225 114 24 chr9 54692286 54693446 -63169181 + L1MCc LINE L1 16 1070 -5871 2074 128 0 48 chr9 54693446 54693798 -63168829 - MER1B DNA MER1_type -2 335 1 2925 225 114 24 chr9 54693798 54694746 -63167881 + L1MCc LINE L1 1070 1931 -5010 2297 103 0 3 chr9 54694746 54695046 -63167581 + AluSx SINE Alu 2 300 -12 2925 225 114 24 chr9 54695046 54695599 -63167028 + L1MCc LINE L1 1931 2433 -4508 471 242 57 32 chr9 54695599 54695723 -63166904 + FLAM_A SINE Alu 1 127 -6 2925 225 114 24 chr9 54695723 54696648 -63165979 + L1MCc LINE L1 2433 4066 -2875 872 257 61 4 chr9 54696661 54696941 -63165686 + L1ME1 LINE L1 5866 6161 -5 504 322 176 10 chr9 54697023 54697324 -63165303 + L2 LINE L2 2899 3249 -64 1295 156 38 25 chr9 54697329 54697566 -63165061 + AluJb SINE Alu 1 240 -72 237 33 0 0 chr9 54697572 54697602 -63165025 + (GA)n Simple_repeat Simple_repeat 1 30 0 291 227 45 0 chr9 54697606 54697738 -63164889 + (TA)n Simple_repeat Simple_repeat 1 138 0 398 319 66 33 chr9 54697799 54698012 -63164615 + HAL1 LINE L1 413 632 -1875 244 104 0 42 chr9 54698467 54698515 -63164112 - MER73 LTR ERVL -384 260 215 298 164 356 0 chr9 54698520 54698593 -63164034 - MER54A LTR ERVL -543 358 260 * 456 115 51 0 chr9 54698573 54698651 -63163976 - MER73 LTR ERVL -552 92 11 710 264 64 32 chr9 54698727 54699038 -63163589 + L1MC5 LINE L1 7246 7566 -395 480 217 85 0 chr9 54699099 54699228 -63163399 + L1MCc LINE L1 4332 4471 -2470 1834 152 7 10 chr9 54699822 54700149 -63162478 + AluSx SINE Alu 1 312 0 475 250 93 7 chr9 54700939 54701079 -63161548 - MIR SINE MIR -108 154 3 1469 181 3 77 chr9 54701852 54702177 -63160450 - AluJo SINE Alu -11 301 1 197 281 47 47 chr9 54702736 54702800 -63159827 - L2 LINE L2 -10 3262 3199 258 156 0 0 chr9 54703062 54703107 -63159520 + (TA)n Simple_repeat Simple_repeat 2 46 0 221 205 0 0 chr9 54703165 54703204 -63159423 + MIR SINE MIR 223 261 -1 2744 163 7 33 chr9 54703387 54703928 -63158699 - L1MA7 LINE L1 -3 6288 5762 24 0 0 0 chr9 54704669 54704693 -63157934 + AT_rich Low_complexity Low_complexity 1 24 0 3567 172 70 35 chr9 54705167 54705965 -63156662 + LTR1B LTR ERV1 1 826 0 222 204 61 0 chr9 54706254 54706303 -63156324 - L2 LINE L2 0 3272 3221 2264 52 39 49 chr9 54706454 54706759 -63155868 + AluY SINE Alu 1 302 -9 4143 151 29 1 chr9 54706870 54707567 -63155060 + L1MC1 LINE L1 5618 6333 0 1283 183 49 132 chr9 54707792 54708339 -63154288 + MLT1D LTR MaLR 1 502 -3 27 0 0 0 chr9 54708567 54708594 -63154033 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr9 54708861 54708883 -63153744 + AT_rich Low_complexity Low_complexity 1 22 0 299 250 13 0 chr9 54709802 54709878 -63152749 + (CATATA)n Simple_repeat Simple_repeat 3 79 0 29 28 0 0 chr9 54710222 54710258 -63152369 + AT_rich Low_complexity Low_complexity 1 36 0 2293 94 0 0 chr9 54710380 54710679 -63151948 - AluSc SINE Alu -10 299 1 21 36 0 0 chr9 54710751 54710779 -63151848 + AT_rich Low_complexity Low_complexity 1 28 0 460 209 141 119 chr9 54710831 54711377 -63151250 + MER34B LTR ERV1 5 562 -3 22 35 0 0 chr9 54711412 54711441 -63151186 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr9 54711993 54712014 -63150613 + AT_rich Low_complexity Low_complexity 1 21 0 485 301 146 3 chr9 54712295 54712595 -63150032 - L1MC/D LINE L1 -368 5802 5494 239 277 65 33 chr9 54712771 54712955 -63149672 - L1ME3 LINE L1 0 6162 5973 1693 234 35 22 chr9 54713177 54713634 -63148993 - L1ME3 LINE L1 -325 5841 5379 1169 231 47 58 chr9 54713649 54714113 -63148514 - L1ME3 LINE L1 -848 5298 4840 1747 135 0 0 chr9 54714120 54714365 -63148262 - AluSx SINE Alu -14 298 54 1006 185 58 16 chr9 54714365 54714717 -63147910 - MLT1B-int LTR MaLR -877 494 3 1479 161 141 48 chr9 54714719 54715073 -63147554 - MLT1B LTR MaLR 0 390 4 1864 216 119 31 chr9 54715081 54715823 -63146804 + L1MC4a LINE L1 4420 5226 -920 2301 107 0 0 chr9 54715868 54716167 -63146460 - AluSx SINE Alu -11 301 3 12485 106 15 34 chr9 54716214 54718363 -63144264 + L1PA7 LINE L1 1 2162 -4299 19779 88 0 14 chr9 54718363 54721420 -63141207 + L1PA7 LINE L1 2797 5787 -682 2447 67 0 3 chr9 54721420 54721719 -63140908 + AluY SINE Alu 1 298 -13 19779 88 0 14 chr9 54721719 54722392 -63140235 + L1PA7 LINE L1 5787 6468 -1 519 287 135 35 chr9 54722713 54722943 -63139684 + L1MC4a LINE L1 5292 5497 -2311 1917 163 3 0 chr9 54722943 54723237 -63139390 + AluSx SINE Alu 1 295 -17 519 287 135 35 chr9 54723237 54723340 -63139287 + L1MC4a LINE L1 5497 5588 -2220 222 118 0 0 chr9 54723340 54723374 -63139253 + (TA)n Simple_repeat Simple_repeat 2 35 0 519 287 135 35 chr9 54723374 54723628 -63138999 + L1MC4a LINE L1 5588 5945 -1863 2177 95 3 14 chr9 54723628 54723922 -63138705 + AluSg1 SINE Alu 1 291 -18 519 287 135 35 chr9 54723922 54723939 -63138688 + L1MC4a LINE L1 5945 5959 -1849 2496 56 3 0 chr9 54724172 54724475 -63138152 + AluY SINE Alu 1 304 -7 322 311 33 25 chr9 54724980 54725102 -63137525 - MIR SINE MIR -2 260 138 672 249 10 0 chr9 54726794 54727054 -63135573 + L1MB3 LINE L1 1784 2140 -4244 1408 192 50 0 chr9 54727076 54727211 -63135416 - AluJo SINE Alu -45 267 113 180 77 0 0 chr9 54727211 54727237 -63135390 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1408 192 50 0 chr9 54727237 54727341 -63135286 - AluJo SINE Alu -199 113 16 1277 172 5 5 chr9 54727378 54727599 -63135028 + AluJo SINE Alu 87 307 -5 8611 222 64 32 chr9 54727599 54730584 -63132043 + L1MB3 LINE L1 2146 5035 -1384 2563 45 7 3 chr9 54730584 54730893 -63131734 + AluY SINE Alu 1 310 -1 8611 222 64 32 chr9 54730893 54731222 -63131405 + L1MB3 LINE L1 5035 5352 -1067 2115 126 0 0 chr9 54731222 54731523 -63131104 + AluY SINE Alu 1 301 -10 8611 222 64 32 chr9 54731523 54732347 -63130280 + L1MB3 LINE L1 5352 6409 -10 222 346 64 0 chr9 54732971 54733049 -63129578 - MIR SINE MIR -133 129 47 411 301 70 70 chr9 54733094 54733423 -63129204 + L1ME4a LINE L1 5738 6066 -55 914 218 96 10 chr9 54734259 54734456 -63128171 - MER20 DNA MER1_type 0 219 6 242 345 103 11 chr9 54735116 54735203 -63127424 + MIR SINE MIR 21 115 -93 373 159 58 0 chr9 54735220 54735289 -63127338 - L1MC4a LINE L1 -1916 5892 5820 247 305 38 61 chr9 54735310 54735441 -63127186 - MIR SINE MIR -58 204 77 24 0 0 0 chr9 54735526 54735550 -63127077 + AT_rich Low_complexity Low_complexity 1 24 0 914 153 74 44 chr9 54735732 54735795 -63126832 + MER3 DNA MER1_type 1 61 -148 2065 143 0 0 chr9 54735795 54736095 -63126532 + AluSx SINE Alu 1 300 -12 914 153 74 44 chr9 54736095 54736234 -63126393 + MER3 DNA MER1_type 61 209 0 2414 65 0 10 chr9 54736309 54736617 -63126010 + AluY SINE Alu 1 305 -6 1867 146 7 0 chr9 54736868 54737149 -63125478 + AluSx SINE Alu 1 283 -29 336 48 0 0 chr9 54737149 54737191 -63125436 + (CAAT)n Simple_repeat Simple_repeat 2 43 0 180 0 0 0 chr9 54738340 54738360 -63124267 + (CA)n Simple_repeat Simple_repeat 1 20 0 25 51 0 0 chr9 54738610 54738649 -63123978 + AT_rich Low_complexity Low_complexity 1 39 0 1992 182 69 5 chr9 54738659 54739049 -63123578 + MSTB1 LTR MaLR 1 415 -17 962 253 102 57 chr9 54740035 54740582 -63122045 + LTR41 LTR ERVL 1 645 -128 1555 194 3 7 chr9 54740582 54740871 -63121756 - AluJb SINE Alu -24 288 1 962 253 102 57 chr9 54740871 54741001 -63121626 + LTR41 LTR ERVL 645 768 -5 442 298 0 43 chr9 54741044 54741185 -63121442 + L2 LINE L2 3179 3313 0 1122 175 4 71 chr9 54741387 54741639 -63120988 + MER46A DNA MER2_type 1 235 -1 26 0 0 0 chr9 54741803 54741829 -63120798 + AT_rich Low_complexity Low_complexity 1 26 0 738 267 57 98 chr9 54743092 54744032 -63118595 + L1MEd LINE L1 673 1573 -4642 2015 128 20 3 chr9 54744056 54744354 -63118273 + AluSx SINE Alu 4 306 -6 1638 111 0 18 chr9 54744440 54744666 -63117961 + AluSq SINE Alu 1 222 -91 322 290 21 11 chr9 54744685 54744778 -63117849 + L1MEd LINE L1 1724 1817 -4579 31 76 0 0 chr9 54744891 54744957 -63117670 + AT_rich Low_complexity Low_complexity 1 66 0 420 304 143 27 chr9 54745008 54745404 -63117223 + L1MEd LINE L1 2134 2537 -3678 37 0 0 0 chr9 54745406 54745443 -63117184 + AT_rich Low_complexity Low_complexity 1 37 0 810 93 9 0 chr9 54745523 54745631 -63116996 - AluSq/x SINE Alu -204 109 1 255 282 100 64 chr9 54745649 54745929 -63116698 + L1MEd LINE L1 2560 2849 -3366 426 337 80 4 chr9 54745960 54746209 -63116418 + L1MEd LINE L1 3548 3815 -2400 23 0 0 0 chr9 54746334 54746357 -63116270 + AT_rich Low_complexity Low_complexity 1 23 0 2069 124 0 0 chr9 54747173 54747456 -63115171 + AluSx SINE Alu 12 294 -18 899 240 90 45 chr9 54747494 54747639 -63114988 + L1M3 LINE L1 11 148 -6711 2158 104 24 0 chr9 54747639 54747927 -63114700 + AluSc SINE Alu 1 295 -14 899 240 90 45 chr9 54747927 54748048 -63114579 + L1M3 LINE L1 148 289 -6570 623 233 53 15 chr9 54748090 54748306 -63114321 - MLT1C LTR MaLR -173 217 1 445 220 13 3 chr9 54748337 54748459 -63114168 + L1M3 LINE L1 1287 1410 -5449 3718 227 32 8 chr9 54748507 54748632 -63113995 + L1M3 LINE L1 1535 1656 -5303 2126 164 8 6 chr9 54748632 54748997 -63113630 - MER47A DNA MER2_type 0 366 1 3718 227 32 8 chr9 54748997 54750244 -63112383 + L1M3 LINE L1 1656 3034 -3925 411 191 90 0 chr9 54750244 54750333 -63112294 - Tigger5 DNA MER2_type 0 2323 2227 564 216 9 2 chr9 54750333 54750471 -63112156 + L1M3 LINE L1 3017 3155 -3802 942 182 0 7 chr9 54750483 54750637 -63111990 + FRAM SINE Alu 1 150 -26 21 36 0 0 chr9 54750637 54750665 -63111962 + AT_rich Low_complexity Low_complexity 1 28 0 2811 246 57 10 chr9 54750713 54751716 -63110911 + L1M3 LINE L1 3219 4268 -2689 555 213 19 26 chr9 54751878 54751940 -63110687 + L1M3 LINE L1 4271 4332 -2625 2621 107 3 6 chr9 54751940 54752305 -63110322 + THE1B LTR MaLR 1 364 0 555 213 19 26 chr9 54752305 54752397 -63110230 + L1M3 LINE L1 4332 4424 -2533 2617 211 66 26 chr9 54752416 54753459 -63109168 + L1M3 LINE L1 5311 6373 -618 798 241 46 0 chr9 54753468 54753684 -63108943 + L1M4b LINE L1 4827 5052 -1905 600 263 16 10 chr9 54803728 54803922 -63058705 - L1MEc LINE L1 -2680 3535 3341 470 280 123 38 chr9 54803916 54804274 -63058353 - L1MEc LINE L1 -4624 1772 1446 * 1779 161 0 24 chr9 54804274 54804572 -63058055 - AluSx SINE Alu -21 291 1 470 280 123 38 chr9 54804572 54804884 -63057743 - L1MEc LINE L1 -4950 1446 1015 207 0 0 0 chr9 54804884 54804907 -63057720 + (GA)n Simple_repeat Simple_repeat 1 23 0 470 280 123 38 chr9 54804907 54804937 -63057690 - L1MEc LINE L1 -5381 1015 989 731 275 57 9 chr9 54804954 54805165 -63057462 + MER58A DNA MER1_type 4 224 0 860 144 0 22 chr9 54805212 54805351 -63057276 + FLAM_C SINE Alu 1 136 -7 1242 211 141 14 chr9 54805354 54805723 -63056904 - L1MEc LINE L1 -5461 935 520 435 279 47 4 chr9 54805882 54806110 -63056517 - L1MEc LINE L1 -5935 461 97 * 684 167 53 148 chr9 54806109 54806373 -63056254 - L1MC4 LINE L1 -895 7147 6909 189 107 0 0 chr9 54806585 54806613 -63056014 + (TA)n Simple_repeat Simple_repeat 2 29 0 1016 191 0 0 chr9 54807634 54807812 -63054815 + FRAM SINE Alu 1 174 -2 195 129 0 0 chr9 54807821 54807852 -63054775 + (A)n Simple_repeat Simple_repeat 1 31 0 778 255 39 24 chr9 54808075 54808283 -63054344 + MIR SINE MIR 3 213 -49 9146 155 32 41 chr9 54808384 54810301 -63052326 + L1M2 LINE L1 3412 5316 -962 1805 144 29 32 chr9 54810301 54810614 -63052013 + AluJb SINE Alu 1 312 0 9146 155 32 41 chr9 54810614 54810799 -63051828 + L1M2 LINE L1 5316 5501 -777 2415 77 3 3 chr9 54811141 54811440 -63051187 - AluSp SINE Alu -14 299 1 1852 168 13 7 chr9 54811698 54812008 -63050619 - AluJo SINE Alu 0 312 1 358 366 15 8 chr9 54812065 54812196 -63050431 - MIR SINE MIR -61 147 16 202 306 0 0 chr9 54812454 54812503 -63050124 - L2 LINE L2 -15 3257 3209 1679 122 11 4 chr9 54813166 54813436 -63049191 + MER41E LTR ERV1 1 272 -240 2404 94 0 0 chr9 54813436 54813744 -63048883 + AluSq SINE Alu 1 308 -5 2875 268 29 8 chr9 54813844 54814561 -63048066 + L1M2 LINE L1 617 1348 -5501 4642 158 44 3 chr9 54814566 54815527 -63047100 + L1M2 LINE L1 1704 2703 -4146 1689 231 44 0 chr9 54815517 54816015 -63046612 + L1M4c LINE L1 1274 1793 -4591 * 381 287 74 22 chr9 54816211 54816502 -63046125 - MERVL LTR ERVL -882 4603 4329 2228 101 0 14 chr9 54816553 54816849 -63045778 - AluSq SINE Alu -19 294 3 619 265 67 52 chr9 54816886 54817214 -63045413 - LTR16C LTR ERVL -1 490 158 759 237 32 5 chr9 54817702 54817892 -63044735 + MIR SINE MIR 18 212 -50 685 269 175 44 chr9 54817899 54818264 -63044363 + L2 LINE L2 2897 3309 -4 228 135 0 0 chr9 54818374 54818411 -63044216 + (CATA)n Simple_repeat Simple_repeat 4 40 0 354 302 86 69 chr9 54819562 54819807 -63042820 - MIR SINE MIR -6 256 8 547 306 35 15 chr9 54819826 54820025 -63042602 + MIR SINE MIR 60 262 0 304 306 48 0 chr9 54820059 54820183 -63042444 - MIR3 SINE MIR -1 207 78 192 77 0 0 chr9 54820283 54820309 -63042318 + (T)n Simple_repeat Simple_repeat 1 26 0 645 179 123 0 chr9 54820415 54820577 -63042050 + MER5A DNA MER1_type 4 185 -4 2155 67 0 0 chr9 54820699 54820984 -63041643 - L1PA8 LINE L1 -20 6152 5868 561 298 93 25 chr9 54821394 54821595 -63041032 + MIR SINE MIR 17 226 -36 4994 154 64 38 chr9 54821890 54823801 -63038826 - L1PB3 LINE L1 -1 6153 4199 580 138 4 24 chr9 54823802 54824028 -63038599 + AluSx SINE Alu 1 269 -41 449 235 63 47 chr9 54827147 54827359 -63035268 + L1MC5 LINE L1 7043 7256 -728 333 240 190 23 chr9 54827492 54827713 -63034914 + L1MC5 LINE L1 7319 7576 -385 334 247 118 72 chr9 54827739 54828002 -63034625 + L1MC5 LINE L1 7580 7854 -107 2156 101 7 7 chr9 54828038 54828336 -63034291 + AluSx SINE Alu 1 298 -14 263 267 48 91 chr9 54828530 54828740 -63033887 - MER20 DNA MER1_type -17 202 2 1903 174 3 0 chr9 54830362 54830672 -63031955 + AluJb SINE Alu 1 311 -1 2086 146 0 3 chr9 54831424 54831733 -63030894 - AluSx SINE Alu -4 308 1 23 33 0 0 chr9 54831819 54831849 -63030778 + AT_rich Low_complexity Low_complexity 1 30 0 518 323 25 5 chr9 54832866 54833067 -63029560 + MIR SINE MIR 51 255 -7 21 0 0 0 chr9 54835187 54835208 -63027419 + AT_rich Low_complexity Low_complexity 1 21 0 705 253 80 84 chr9 54836322 54837530 -63025097 + L1M4 LINE L1 1147 2475 -4350 2164 121 0 0 chr9 54837530 54837820 -63024807 + AluSp SINE Alu 1 290 -23 705 253 80 84 chr9 54837820 54838040 -63024587 + L1M4 LINE L1 2475 2694 -4131 1156 252 182 23 chr9 54838093 54838167 -63024460 + L1MCa LINE L1 166 227 -6337 1658 182 4 18 chr9 54838167 54838447 -63024180 + AluJo SINE Alu 1 276 -36 537 44 0 0 chr9 54838452 54838520 -63024107 + (TAGA)n Simple_repeat Simple_repeat 4 71 0 1156 252 182 23 chr9 54838520 54838923 -63023704 + L1MCa LINE L1 230 726 -5838 1746 187 33 29 chr9 54838956 54839405 -63023222 + L1MCa LINE L1 628 1078 -4967 351 133 0 239 chr9 54839414 54839527 -63023100 + Tigger1 DNA MER2_type 24 109 -2309 4483 131 11 11 chr9 54839530 54840285 -63022342 + Tigger1 DNA MER2_type 1432 2186 -232 556 255 44 49 chr9 54840578 54840782 -63021845 - MIR SINE MIR -34 228 26 2397 99 0 6 chr9 54840823 54841137 -63021490 - AluSp SINE Alu -1 312 1 379 350 38 6 chr9 54841691 54841851 -63020776 + L2 LINE L2 2178 2342 -972 6040 86 37 53 chr9 54842331 54843322 -63019305 - L1PA14 LINE L1 -1 6160 5162 397 228 26 44 chr9 54843546 54843660 -63018967 + MIR SINE MIR 137 248 -14 1416 264 147 19 chr9 54843951 54844051 -63018576 + L2 LINE L2 1798 1884 -1430 365 53 0 18 chr9 54844051 54844108 -63018519 + (TTTTG)n Simple_repeat Simple_repeat 1 56 0 1966 133 4 0 chr9 54844110 54844388 -63018239 - AluSx SINE Alu -33 279 1 1416 264 147 19 chr9 54844388 54844822 -63017805 + L2 LINE L2 1884 2404 -910 2421 87 0 3 chr9 54844833 54845143 -63017484 - AluSc SINE Alu 0 309 1 443 297 183 8 chr9 54845167 54845682 -63016945 + L2 LINE L2 2591 3313 0 2143 112 3 0 chr9 54845688 54845975 -63016652 - AluSx SINE Alu -16 296 9 26 0 0 0 chr9 54846154 54846180 -63016447 + AT_rich Low_complexity Low_complexity 1 26 0 2569 126 24 7 chr9 54848132 54848545 -63014082 + LTR39 LTR ERV1 1 420 -363 2099 188 65 101 chr9 54848545 54849227 -63013400 - LTR8A LTR ERV1 0 727 71 21 0 0 0 chr9 54849706 54849727 -63012900 + AT_rich Low_complexity Low_complexity 1 21 0 2165 115 0 0 chr9 54849891 54850187 -63012440 + AluSx SINE Alu 1 296 -16 2129 148 0 0 chr9 54850192 54850502 -63012125 + AluSg SINE Alu 1 310 0 270 56 0 0 chr9 54852547 54852583 -63010044 + (CA)n Simple_repeat Simple_repeat 2 37 0 1990 92 38 89 chr9 54852718 54853033 -63009594 + AluSx SINE Alu 1 299 -13 203 135 81 0 chr9 54853295 54853332 -63009295 + L2 LINE L2 3273 3312 -1 180 0 0 0 chr9 54853443 54853463 -63009164 + (T)n Simple_repeat Simple_repeat 1 20 0 233 258 15 0 chr9 54853467 54853533 -63009094 + MLT1J2 LTR MaLR 97 163 -287 665 307 52 9 chr9 54853778 54854009 -63008618 - MIR SINE MIR -21 241 1 450 53 0 0 chr9 54854246 54854303 -63008324 + (CA)n Simple_repeat Simple_repeat 2 58 0 1846 142 25 0 chr9 54854413 54854688 -63007939 + AluJb SINE Alu 15 296 -16 2230 137 0 0 chr9 54854965 54855272 -63007355 + AluSx SINE Alu 1 307 -5 5566 32 6 0 chr9 54855964 54856627 -63006000 + L1PA4 LINE L1 5487 6153 -2 520 194 82 24 chr9 54856918 54857088 -63005539 - MER112 DNA MER1_type 0 260 81 343 262 141 73 chr9 54857467 54857658 -63004969 - MER112 DNA MER1_type -1 259 56 273 29 0 0 chr9 54857783 54857817 -63004810 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 2061 124 13 3 chr9 54857932 54858230 -63004397 - AluY SINE Alu -10 301 1 2237 104 0 22 chr9 54858354 54858670 -63003957 + AluSg SINE Alu 1 309 -1 1789 152 45 3 chr9 54858711 54859000 -63003627 + AluSx SINE Alu 1 301 -11 374 287 11 0 chr9 54860523 54860617 -63002010 + L2 LINE L2 3218 3312 -1 192 338 14 14 chr9 54860889 54860963 -63001664 - MIR SINE MIR -67 195 122 444 125 16 0 chr9 54862310 54862374 -63000253 + AluS SINE Alu 3 67 -242 1804 168 10 0 chr9 54864107 54864399 -62998228 + AluJb SINE Alu 1 295 -17 342 321 79 0 chr9 54864400 54864565 -62998062 - Charlie8 DNA MER1_type -1945 472 295 440 197 76 23 chr9 54864611 54864743 -62997884 - Charlie8 DNA MER1_type -2222 195 57 286 125 42 0 chr9 54865047 54865095 -62997532 + MER53 DNA DNA 139 188 -1 983 174 0 0 chr9 54865509 54865676 -62996951 - MLT1B LTR MaLR -42 348 182 259 313 0 0 chr9 54865817 54865884 -62996743 - MER63B DNA MER1_type 0 436 370 1366 166 0 17 chr9 54865909 54866243 -62996384 - MSTA LTR MaLR -2 426 1 1124 206 28 32 chr9 54866244 54866497 -62996130 - MER63B DNA MER1_type -167 269 18 350 283 10 10 chr9 54866500 54866599 -62996028 - MLT1L LTR MaLR -390 225 127 2136 160 70 11 chr9 54866632 54867006 -62995621 - MSTD LTR MaLR 0 396 1 1004 125 7 0 chr9 54867210 54867354 -62995273 - AluSp SINE Alu -168 145 1 2856 209 103 16 chr9 54867376 54868221 -62994406 - L1PBa LINE L1 -3656 3206 2287 1655 140 97 0 chr9 54868313 54868592 -62994035 + MER67A LTR ERV1 1 306 -237 572 271 77 51 chr9 54868626 54869017 -62993610 + HAL1 LINE L1 1062 1462 -1045 368 275 33 0 chr9 54869191 54869282 -62993345 + L2 LINE L2 3195 3288 -25 270 253 71 50 chr9 54869324 54869506 -62993121 + HAL1 LINE L1 2003 2188 -319 232 244 0 0 chr9 54869729 54869774 -62992853 + (TG)n Simple_repeat Simple_repeat 2 46 0 1209 164 49 4 chr9 54871179 54871258 -62991369 - L1MB1 LINE L1 -1 6167 6093 276 30 0 0 chr9 54871258 54871291 -62991336 + (TA)n Simple_repeat Simple_repeat 1 33 0 * 297 0 0 0 chr9 54871290 54871323 -62991304 + (CA)n Simple_repeat Simple_repeat 2 34 0 1209 164 49 4 chr9 54871291 54871468 -62991159 - L1MB1 LINE L1 -75 6093 5933 2295 141 36 30 chr9 54871495 54871857 -62990770 - THE1B LTR MaLR 0 364 1 268 297 0 0 chr9 54872196 54872260 -62990367 - MLT1L LTR MaLR -205 410 347 315 246 26 22 chr9 54872649 54872770 -62989857 - MLT1H LTR MaLR -268 162 16 502 296 53 0 chr9 54873351 54873503 -62989124 + MIR3 SINE MIR 48 207 -1 649 272 134 22 chr9 54875028 54875341 -62987286 - MER7A DNA MER2_type 0 346 1 9576 206 23 3 chr9 54875444 54877463 -62985164 + L1 LINE L1 2261 4318 -1828 17398 76 15 5 chr9 54877564 54879949 -62982678 + L1P LINE L1 1523 3930 -2216 1513 225 63 3 chr9 54880051 54880353 -62982274 - MLT1A1 LTR MaLR -42 323 4 893 117 41 21 chr9 54880375 54880520 -62982107 + LTR39 LTR ERV1 1 148 -635 * 2119 139 40 32 chr9 54880519 54880892 -62981735 + LTR39 LTR ERV1 250 625 -158 290 174 0 0 chr9 54880884 54880930 -62981697 + MER20 DNA MER1_type 174 219 0 * 592 178 76 8 chr9 54881088 54881206 -62981421 + LTR39 LTR ERV1 658 783 0 208 315 0 0 chr9 54881392 54881446 -62981181 + (CATA)n Simple_repeat Simple_repeat 3 56 0 291 365 163 18 chr9 54881450 54882085 -62980542 + L2 LINE L2 2292 3047 -225 914 171 131 0 chr9 54882086 54882261 -62980366 + MER20 DNA MER1_type 22 219 0 1722 169 0 18 chr9 54882761 54883034 -62979593 - AluJb SINE Alu -43 269 2 1328 174 28 0 chr9 54883388 54883600 -62979027 - MER20 DNA MER1_type 0 219 2 732 159 212 69 chr9 54884644 54884833 -62977794 - MER20 DNA MER1_type -3 216 1 2244 96 0 63 chr9 54886937 54887269 -62975358 - AluSx SINE Alu -1 311 1 2242 92 20 3 chr9 54887504 54887797 -62974830 - AluSc SINE Alu -11 298 1 236 200 0 0 chr9 54887919 54887969 -62974658 - LTR30 LTR ERV1 -118 604 555 5693 139 33 34 chr9 54887972 54889154 -62973473 - pTR5 LTR ERV1 -405 2033 743 234 218 115 0 chr9 54889405 54889483 -62973144 - MIR3 SINE MIR -10 198 112 325 214 10 58 chr9 54889492 54889595 -62973032 + L2 LINE L2 3171 3268 -4 267 286 67 19 chr9 54889640 54889745 -62972882 - MER5A DNA MER1_type 0 189 80 237 305 78 78 chr9 54889663 54889817 -62972810 + MER5A DNA MER1_type 36 189 0 * 2912 214 128 16 chr9 54890340 54891178 -62971449 - MER52A LTR ERV1 -823 932 1 878 240 59 18 chr9 54891216 54891437 -62971190 - MIR SINE MIR -5 257 28 1126 208 28 0 chr9 54891918 54892130 -62970497 - MER20 DNA MER1_type 0 219 2 2250 97 0 0 chr9 54892227 54892515 -62970112 - AluY SINE Alu -23 288 1 303 285 30 90 chr9 54892600 54892800 -62969827 + L2 LINE L2 3126 3313 0 511 323 60 0 chr9 54892975 54893210 -62969417 - MIR SINE MIR -1 261 13 214 250 0 0 chr9 54894954 54894998 -62967629 + GA-rich Low_complexity Low_complexity 5 48 0 246 376 29 41 chr9 54895050 54895220 -62967407 - MIR SINE MIR -81 181 14 1583 220 21 52 chr9 54896387 54896769 -62965858 - MLT1A2 LTR MaLR -4 370 1 473 310 69 5 chr9 54897240 54897443 -62965184 + MIR SINE MIR 29 244 -18 540 68 0 0 chr9 54898163 54898236 -62964391 + (TGGA)n Simple_repeat Simple_repeat 1 73 0 361 277 111 101 chr9 54899115 54899422 -62963205 + MER102a DNA MER1_type 19 328 -2 1501 178 57 32 chr9 54899598 54899951 -62962676 - MLT1A1 LTR MaLR -2 363 1 546 122 0 0 chr9 54900443 54900541 -62962086 + (GGAA)n Simple_repeat Simple_repeat 1 98 0 272 254 28 49 chr9 54900668 54900810 -62961817 - Charlie7 DNA MER1_type -4 2608 2470 258 239 141 70 chr9 54900876 54901018 -62961609 + LTR16A LTR ERVL 117 268 -182 236 275 0 29 chr9 54901118 54901187 -62961440 + MIR SINE MIR 105 171 -91 1404 108 0 0 chr9 54901286 54901471 -62961156 + AluSg/x SINE Alu 112 296 -16 220 139 0 0 chr9 54901569 54901605 -62961022 + L2 LINE L2 3270 3305 -8 405 147 0 27 chr9 54903089 54903164 -62959463 + MLT1H LTR MaLR 136 208 -341 251 162 116 93 chr9 54903274 54903386 -62959241 + MLT1J2 LTR MaLR 285 450 0 478 278 75 28 chr9 54904329 54904584 -62958043 - L2 LINE L2 0 3313 3047 800 290 22 4 chr9 54904609 54904840 -62957787 - MIR SINE MIR -24 238 4 314 296 20 0 chr9 54904931 54905029 -62957598 - L2 LINE L2 -685 2629 2530 227 377 13 0 chr9 54905082 54905159 -62957468 + L2 LINE L2 3201 3278 -35 777 168 0 8 chr9 54905160 54905279 -62957348 - FLAM_C SINE Alu -15 128 11 437 266 62 62 chr9 54905339 54905580 -62957047 + MIR SINE MIR 13 253 -9 1973 138 3 25 chr9 54905734 54906052 -62956575 + AluSx SINE Alu 1 311 -1 904 164 12 0 chr9 54906973 54907138 -62955489 + L1MB2 LINE L1 5960 6126 -45 2557 57 0 0 chr9 54907138 54907438 -62955189 + AluY SINE Alu 1 300 -11 204 175 50 0 chr9 54907439 54907479 -62955148 + L2 LINE L2 3254 3295 -18 210 315 0 63 chr9 54908477 54908588 -62954039 - MIR3 SINE MIR -6 202 99 1409 199 63 0 chr9 54908637 54908908 -62953719 - AluJb SINE Alu -20 292 5 381 131 0 0 chr9 54911057 54911118 -62951509 + (T)n Simple_repeat Simple_repeat 1 61 0 216 0 0 0 chr9 54911512 54911536 -62951091 + (T)n Simple_repeat Simple_repeat 1 24 0 2465 76 0 3 chr9 54911554 54911855 -62950772 + AluY SINE Alu 1 300 -11 22 35 0 0 chr9 54912184 54912213 -62950414 + AT_rich Low_complexity Low_complexity 1 29 0 300 328 47 31 chr9 54912227 54912355 -62950272 + L2 LINE L2 3138 3267 -5 1939 142 16 3 chr9 54912724 54913027 -62949600 - AluSx SINE Alu -5 307 1 530 194 42 141 chr9 54913337 54913528 -62949099 - AluJb SINE Alu -23 289 118 1310 176 92 11 chr9 54913655 54913916 -62948711 + AluJo SINE Alu 1 282 -30 507 279 111 17 chr9 54914847 54915154 -62947473 - L1MC4a LINE L1 -323 5798 5573 195 306 149 21 chr9 54915947 54916182 -62946445 - L2 LINE L2 -1169 2145 1881 2530 74 0 3 chr9 54916557 54916869 -62945758 - AluSq SINE Alu 0 313 3 375 212 61 30 chr9 54916871 54916970 -62945657 + MER58A DNA MER1_type 42 143 0 293 226 29 95 chr9 54917061 54917198 -62945429 + MER5A DNA MER1_type 37 164 -25 183 80 0 0 chr9 54917302 54917327 -62945300 + (T)n Simple_repeat Simple_repeat 1 25 0 209 311 107 29 chr9 54917336 54917439 -62945188 + MIR SINE MIR 43 153 -109 702 185 7 0 chr9 54918526 54918661 -62943966 + L1PA16 LINE L1 6022 6157 -9 245 253 96 34 chr9 54918685 54918831 -62943796 + L1ME4a LINE L1 5965 6119 -2 224 221 209 76 chr9 54919496 54919654 -62942973 + MIR SINE MIR 34 212 -50 553 253 108 0 chr9 54919756 54919914 -62942713 - MER96 DNA MER1_type 0 175 1 1929 134 3 14 chr9 54920044 54920348 -62942279 - AluSx SINE Alu 0 301 1 2378 98 0 0 chr9 54920916 54921223 -62941404 + AluSx SINE Alu 1 307 -5 380 306 109 0 chr9 54921245 54921438 -62941189 - L1MC4a LINE L1 -1911 5897 5684 1824 128 38 0 chr9 54924288 54924553 -62938074 + AluSx SINE Alu 5 279 -33 1036 170 36 18 chr9 54925441 54925665 -62936962 - L1MB2 LINE L1 0 6171 5944 477 250 21 21 chr9 54925924 54926064 -62936563 + MIR SINE MIR 102 241 -21 349 314 40 0 chr9 54926345 54926469 -62936158 - L2 LINE L2 -3 3310 3182 267 261 133 59 chr9 54927316 54927519 -62935108 + MLT1L LTR MaLR 63 280 -335 1707 184 23 10 chr9 54927520 54927824 -62934803 - AluJb SINE Alu -4 308 1 1659 154 26 56 chr9 54928157 54928463 -62934164 - AluJo SINE Alu -15 297 1 2135 262 84 57 chr9 54928907 54929036 -62933591 - L2 LINE L2 -1 3312 3188 1653 167 50 10 chr9 54929036 54929336 -62933291 + AluJb SINE Alu 1 312 0 2135 262 84 57 chr9 54929336 54930191 -62932436 - L2 LINE L2 -125 3188 2275 2385 88 0 22 chr9 54930191 54930508 -62932119 + AluY SINE Alu 1 310 -1 2135 262 84 57 chr9 54930508 54930955 -62931672 - L2 LINE L2 -1038 2275 1842 888 101 0 2 chr9 54931075 54931356 -62931271 + AluSx SINE Alu 3 332 0 1039 207 40 53 chr9 54931359 54931676 -62930951 - MER67C LTR ERV1 -6 508 203 21 71 0 0 chr9 54931688 54931730 -62930897 + AT_rich Low_complexity Low_complexity 1 42 0 749 141 51 102 chr9 54931746 54931905 -62930722 - MER67C LTR ERV1 -463 247 96 2236 119 6 0 chr9 54931905 54932216 -62930411 + AluSq SINE Alu 1 313 0 749 141 51 102 chr9 54932216 54932233 -62930394 - MER67C LTR ERV1 -614 96 80 420 171 13 0 chr9 54932289 54932365 -62930262 - MER67D LTR ERV1 -437 77 1 919 160 47 24 chr9 54934623 54934792 -62927835 + MER20 DNA MER1_type 5 177 -42 520 267 180 14 chr9 54935946 54936163 -62926464 - MIR SINE MIR -1 261 9 477 343 40 5 chr9 54936627 54936825 -62925802 - MIR SINE MIR -11 251 47 348 222 67 67 chr9 54936997 54937132 -62925495 - MER103 DNA DNA 0 166 32 1739 186 62 23 chr9 54937386 54937772 -62924855 - L1MB7 LINE L1 -5 6179 5779 273 250 0 53 chr9 54938058 54938134 -62924493 + MLT1K LTR MaLR 337 408 -180 814 237 58 13 chr9 54938395 54938619 -62924008 + LTR52 LTR ERVL 1 234 -187 990 195 65 0 chr9 54938622 54938822 -62923805 + MLT2B1 LTR ERVL 1 213 -307 496 88 15 0 chr9 54938923 54938991 -62923636 - AluS SINE Alu -243 70 2 2474 199 42 40 chr9 54939285 54939908 -62922719 + MLT1E3 LTR MaLR 1 624 0 2366 71 0 14 chr9 54940535 54940862 -62921765 - AluY SINE Alu 0 311 1 2025 75 41 88 chr9 54941273 54941592 -62921035 - AluY SINE Alu -7 304 1 2284 119 0 7 chr9 54942725 54943035 -62919592 - AluSx SINE Alu -4 308 1 1845 154 21 27 chr9 54943055 54943393 -62919234 + MLT1B LTR MaLR 1 336 -54 295 155 35 0 chr9 54943403 54943461 -62919166 + MER65A LTR ERV1 383 442 -3 579 254 10 42 chr9 54943596 54943789 -62918838 - MER5A DNA MER1_type 0 189 3 521 165 0 35 chr9 54943932 54944009 -62918618 - MER30 DNA MER1_type -3 227 152 736 200 117 7 chr9 54944009 54944154 -62918473 - FRAM SINE Alu -5 161 1 1546 142 14 102 chr9 54944159 54944503 -62918124 + MLT1B LTR MaLR 73 386 -4 7797 177 80 24 chr9 54944509 54946170 -62916457 - MER52A LTR ERV1 0 1755 1 813 240 59 18 chr9 54946208 54946429 -62916198 - MIR SINE MIR -5 257 28 1052 208 28 0 chr9 54946910 54947122 -62915505 - MER20 DNA MER1_type 0 219 2 2015 146 0 0 chr9 54947219 54947507 -62915120 - AluJb SINE Alu -23 289 2 223 195 0 0 chr9 54947580 54947621 -62915006 - MER91 DNA MER1_type -148 42 2 712 285 28 9 chr9 54948510 54948724 -62913903 - MIR SINE MIR -11 251 34 4604 200 26 18 chr9 54948857 54949565 -62913062 + L1MB2 LINE L1 4295 4996 -1175 2259 96 0 3 chr9 54949565 54949858 -62912769 + AluSg SINE Alu 1 292 -18 4604 200 26 18 chr9 54949858 54950162 -62912465 + L1MB2 LINE L1 4996 5296 -875 2458 87 0 13 chr9 54950162 54950472 -62912155 + AluSq SINE Alu 1 306 -7 4604 200 26 18 chr9 54950472 54951323 -62911304 + L1MB2 LINE L1 5296 6170 -1 182 355 80 7 chr9 54951369 54951507 -62911120 + L3b LINE CR1 1428 1575 -8 1343 189 36 47 chr9 54952430 54952585 -62910042 + MLT1H LTR MaLR 13 168 -427 1859 156 6 32 chr9 54952585 54952900 -62909727 + AluJb SINE Alu 1 307 -5 1343 189 36 47 chr9 54952900 54953070 -62909557 + MLT1H LTR MaLR 168 364 -231 1586 65 0 0 chr9 54953152 54953338 -62909289 + AluY SINE Alu 1 186 -125 627 101 0 0 chr9 54953338 54953427 -62909200 + AluSg/x SINE Alu 217 305 -4 199 152 15 15 chr9 54953615 54953681 -62908946 + (TA)n Simple_repeat Simple_repeat 1 66 0 1680 224 144 11 chr9 54954744 54955222 -62907405 + MER34 LTR ERV1 1 542 0 1954 107 28 0 chr9 54955446 54955737 -62906890 + L1MA5A LINE L1 5997 6295 -2 705 221 0 0 chr9 54955744 54955866 -62906761 + FLAM_A SINE Alu 2 123 -10 483 305 134 19 chr9 54956266 54956751 -62905876 + L2 LINE L2 1802 2342 -972 667 249 61 58 chr9 54956823 54957226 -62905401 - LTR33A LTR ERVL -87 436 2 991 229 15 98 chr9 54957226 54957529 -62905098 - L1P1 LINE L1 -283 5872 5605 7601 38 0 0 chr9 54957529 54958911 -62903716 + L1PA4 LINE L1 4774 6152 -3 991 229 15 98 chr9 54958911 54958998 -62903629 - L1P1 LINE L1 -550 5605 5512 286 281 118 90 chr9 54959157 54959335 -62903292 + L2 LINE L2 2992 3174 -98 392 303 97 13 chr9 54959372 54959527 -62903100 + MLT1K LTR MaLR 102 269 -319 318 187 94 163 chr9 54959697 54959788 -62902839 + MSTC LTR MaLR 2 73 -384 252 0 0 0 chr9 54959788 54959816 -62902811 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 318 187 94 163 chr9 54959816 54959927 -62902700 + MSTC LTR MaLR 73 190 -267 2653 220 43 52 chr9 54961100 54961426 -62901201 + L1MC4 LINE L1 7243 7570 -472 1606 131 27 101 chr9 54961426 54961762 -62900865 - AluJo SINE Alu -1 311 1 2653 220 43 52 chr9 54961762 54962227 -62900400 + L1MC4 LINE L1 7570 8027 -15 37918 86 12 10 chr9 54962389 54966678 -62895949 - L1PA6 LINE L1 -4 6150 1850 2270 70 0 35 chr9 54966678 54966994 -62895633 + AluY SINE Alu 1 305 -6 37918 86 12 10 chr9 54966994 54968845 -62893782 - L1PA6 LINE L1 -4304 1850 3 2162 112 3 0 chr9 54970042 54970336 -62892291 - AluSq SINE Alu -18 295 1 1931 130 7 0 chr9 54970892 54971177 -62891450 + AluSx SINE Alu 9 295 -17 1693 167 3 10 chr9 54971278 54971571 -62891056 + AluJo SINE Alu 1 291 -21 182 326 84 0 chr9 54972348 54972443 -62890184 - MIR3 SINE MIR -51 157 55 2094 95 3 7 chr9 54972558 54972852 -62889775 + AluSx SINE Alu 1 293 -19 354 259 122 0 chr9 54975335 54975466 -62887161 + MIR SINE MIR 82 228 -34 649 196 0 63 chr9 54975598 54975741 -62886886 + MIR SINE MIR 79 212 -50 1124 266 81 47 chr9 54975763 54975918 -62886709 + MLT1H LTR MaLR 91 239 -310 2147 105 0 23 chr9 54975918 54976222 -62886405 + AluSg SINE Alu 1 297 -13 198 0 0 0 chr9 54976222 54976244 -62886383 + (TA)n Simple_repeat Simple_repeat 2 23 0 1124 266 81 47 chr9 54976244 54976531 -62886096 + MLT1H LTR MaLR 238 549 0 295 68 0 0 chr9 54976607 54976651 -62885976 - L1MA3 LINE L1 0 6305 6262 230 191 0 29 chr9 54979500 54979568 -62883059 + (TATG)n Simple_repeat Simple_repeat 2 67 0 1859 138 0 29 chr9 54979579 54979890 -62882737 - AluJo SINE Alu -10 302 1 196 356 0 11 chr9 54981036 54981123 -62881504 + L2 LINE L2 3186 3271 -1 917 211 5 4 chr9 54981127 54981902 -62880725 + (TGGA)n Simple_repeat Simple_repeat 1 776 0 1218 210 116 50 chr9 54982964 54983402 -62879225 + MLT1C LTR MaLR 1 467 0 1790 150 7 0 chr9 54984270 54984564 -62878063 + AluJo SINE Alu 9 304 -8 254 240 122 125 chr9 54985210 54985522 -62877105 + MLT1K LTR MaLR 187 497 -91 210 167 0 0 chr9 54985578 54985614 -62877013 + L2 LINE L2 3208 3243 -29 558 222 62 40 chr9 54986408 54986584 -62876043 - MIR SINE MIR -74 188 9 264 306 50 62 chr9 54987801 54987866 -62874761 + L1ME4a LINE L1 5762 5826 -295 1490 176 22 44 chr9 54987866 54988185 -62874442 + AluJo SINE Alu 1 312 0 264 306 50 62 chr9 54988185 54988377 -62874250 + L1ME4a LINE L1 5826 6016 -105 2090 92 11 0 chr9 54988418 54988729 -62873898 - AluSx SINE Alu 0 314 1 2215 115 0 0 chr9 54989086 54989399 -62873228 - AluSp SINE Alu 0 313 1 2144 95 10 0 chr9 54989955 54990260 -62872367 - AluSg SINE Alu -2 308 1 2091 85 18 0 chr9 54990912 54991195 -62871432 + AluSx SINE Alu 9 296 -16 433 263 194 34 chr9 54991473 54991648 -62870979 + MIR SINE MIR 6 208 -54 524 228 84 114 chr9 54991758 54991960 -62870667 - MIR SINE MIR -1 261 66 2167 103 3 0 chr9 54992149 54992450 -62870177 + AluSx SINE Alu 1 302 -10 1937 127 3 0 chr9 54992945 54993228 -62869399 - AluSx SINE Alu -26 286 3 2250 82 3 0 chr9 54993850 54994144 -62868483 - AluSg SINE Alu -15 295 1 532 234 69 51 chr9 54994383 54994444 -62868183 - MER97a DNA MER1_type? -715 179 121 2122 113 22 100 chr9 54994444 54994894 -62867733 + L1MB3 LINE L1 5767 6181 -2 532 234 69 51 chr9 54994894 54995007 -62867620 - MER97a DNA MER1_type? -773 121 2 979 194 12 0 chr9 54995845 54996015 -62866612 + FAM SINE Alu 4 175 0 236 305 21 21 chr9 54996113 54996208 -62866419 + MLT1K LTR MaLR 77 171 -417 299 178 14 41 chr9 54996359 54996432 -62866195 + MLT1K LTR MaLR 432 502 -86 2232 104 0 0 chr9 54996489 54996796 -62865831 + AluSx SINE Alu 1 307 -5 716 264 149 19 chr9 54997378 54997815 -62864812 + MLT1K LTR MaLR 15 579 -9 314 261 90 85 chr9 54999033 54999142 -62863485 - MER5A DNA MER1_type 0 189 77 2148 95 6 25 chr9 54999142 54999457 -62863170 - AluY SINE Alu -2 309 1 314 261 90 85 chr9 54999457 54999535 -62863092 - MER5A DNA MER1_type -112 77 1 1735 134 0 70 chr9 55000865 55001193 -62861434 + AluJo SINE Alu 1 305 -7 377 214 60 26 chr9 55001785 55001902 -62860725 + L1MC5 LINE L1 7811 7931 -30 2135 96 3 22 chr9 55002093 55002407 -62860220 + AluSc SINE Alu 1 308 -1 1135 134 0 11 chr9 55002732 55002911 -62859716 - FRAM SINE Alu 0 176 1 405 289 21 32 chr9 55002911 55003101 -62859526 - MER112 DNA MER1_type -67 193 6 238 300 18 36 chr9 55005469 55005579 -62857048 + MIR3 SINE MIR 95 202 -6 310 200 153 12 chr9 55006710 55006795 -62855832 - MER102b DNA MER1_type -3 338 242 824 245 184 31 chr9 55006894 55007221 -62855406 + MLT1J2 LTR MaLR 72 448 -2 423 238 105 50 chr9 55007221 55007401 -62855226 - MER102b DNA MER1_type -95 246 57 2493 56 0 0 chr9 55007632 55007934 -62854693 + AluY SINE Alu 1 302 -9 1221 122 0 65 chr9 55008290 55008504 -62854123 + AluSx SINE Alu 1 200 -112 497 145 12 0 chr9 55008505 55008588 -62854039 - L1MB2 LINE L1 -179 5992 5909 669 133 9 0 chr9 55008588 55008693 -62853934 + AluSx SINE Alu 190 295 -15 1768 135 63 6 chr9 55008854 55009172 -62853455 - L1MB3 LINE L1 -1 6182 5847 824 146 0 8 chr9 55009181 55009311 -62853316 - FLAM_C SINE Alu -4 129 1 180 0 0 0 chr9 55009513 55009533 -62853094 + (T)n Simple_repeat Simple_repeat 1 20 0 1107 114 97 0 chr9 55010459 55010635 -62851992 - Tigger3(Golem) DNA MER2_type -2 3027 2835 708 297 84 34 chr9 55010824 55011314 -62851313 + L2 LINE L2 2507 3310 -3 1814 172 143 8 chr9 55011602 55011979 -62850648 + MSTA LTR MaLR 1 428 0 202 262 66 16 chr9 55012156 55012217 -62850410 - L3 LINE CR1 -7 1570 1507 2460 83 0 0 chr9 55013828 55014129 -62848498 - AluSg SINE Alu -9 301 1 290 211 0 0 chr9 55014389 55014446 -62848181 - MLT1K LTR MaLR -11 577 521 846 233 0 0 chr9 55014579 55014742 -62847885 - FRAM SINE Alu -3 163 1 2114 136 7 0 chr9 55014782 55015090 -62847537 - AluSx SINE Alu -2 310 1 3279 107 36 38 chr9 55016212 55016790 -62845837 - L1MB2 LINE L1 -3 6168 5592 506 208 129 0 chr9 55016818 55016919 -62845708 - FLAM_C SINE Alu -25 118 5 737 196 6 36 chr9 55016920 55017088 -62845539 - L1MB2 LINE L1 -560 5611 5449 733 129 79 36 chr9 55017189 55017329 -62845298 - AluJb SINE Alu -1 311 166 3069 66 72 182 chr9 55017329 55018530 -62844097 + LTR12 LTR ERV1 1 714 0 1200 136 0 0 chr9 55018530 55018699 -62843928 - AluJb SINE Alu -143 169 1 1629 165 0 90 chr9 55019332 55019531 -62843096 - AluJb SINE Alu -7 305 144 402 113 32 0 chr9 55019531 55019593 -62843034 - L1PA11 LINE L1 -17 6157 6094 1629 165 0 90 chr9 55019593 55019715 -62842912 - AluJb SINE Alu -168 144 13 1252 76 0 0 chr9 55021028 55021185 -62841442 - AluY SINE Alu -154 157 1 2476 44 7 3 chr9 55022047 55022343 -62840284 - AluY SINE Alu -14 297 1 274 248 40 30 chr9 55023520 55023621 -62839006 - MER112 DNA MER1_type -6 254 153 562 303 117 9 chr9 55024291 55024720 -62837907 - L1ME LINE L1 -335 5786 5312 358 322 119 25 chr9 55024810 55025012 -62837615 - L1ME LINE L1 -965 5181 4961 549 325 99 37 chr9 55025202 55025719 -62836908 - L1ME LINE L1 -1453 4693 4145 601 261 117 19 chr9 55025792 55026167 -62836460 - L1ME LINE L1 -2155 3991 3580 1507 145 38 88 chr9 55026181 55026498 -62836129 - AluJo SINE Alu -11 301 1 2284 109 0 0 chr9 55026521 55026824 -62835803 - AluSq SINE Alu -10 303 1 561 266 166 58 chr9 55026855 55027426 -62835201 - L1ME LINE L1 -2660 3486 2854 1234 200 127 11 chr9 55027640 55027770 -62834857 - L1ME1 LINE L1 -5 6161 6047 180 0 0 0 chr9 55027770 55027790 -62834837 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 1234 200 127 11 chr9 55027790 55028282 -62834345 - L1ME1 LINE L1 -119 6047 5444 2188 85 3 42 chr9 55028388 55028695 -62833932 - AluSx SINE Alu -17 295 1 1257 273 30 15 chr9 55029100 55029499 -62833128 + MLT1I LTR MaLR 5 409 0 26 0 0 0 chr9 55029507 55029533 -62833094 + AT_rich Low_complexity Low_complexity 1 26 0 1264 196 42 61 chr9 55029821 55029929 -62832698 + AluJo SINE Alu 1 110 -202 2263 108 0 37 chr9 55029929 55030253 -62832374 + AluSx SINE Alu 1 312 0 1264 196 42 61 chr9 55030253 55030455 -62832172 + AluJo SINE Alu 110 305 -7 293 246 168 39 chr9 55030607 55030887 -62831740 - HAL1 LINE L1 -1397 1110 795 22 0 0 0 chr9 55031262 55031284 -62831343 + AT_rich Low_complexity Low_complexity 1 22 0 197 268 338 30 chr9 55032257 55032929 -62829698 + L2 LINE L2 1620 2498 -816 379 259 18 0 chr9 55033078 55033190 -62829437 - MER103 DNA DNA -2 164 51 2170 70 92 0 chr9 55033191 55033475 -62829152 + AluY SINE Alu 1 310 -1 370 307 63 58 chr9 55033622 55033966 -62828661 + L2 LINE L2 2674 3024 -248 522 219 22 73 chr9 55034525 55034662 -62827965 + MIR SINE MIR 51 180 -82 451 266 50 14 chr9 55034827 55034966 -62827661 + L2 LINE L2 3167 3310 -3 22 56 0 0 chr9 55035075 55035111 -62827516 + AT_rich Low_complexity Low_complexity 1 36 0 203 171 0 24 chr9 55036461 55036502 -62826125 - L3b LINE CR1 -13 1570 1531 854 163 0 0 chr9 55037485 55037614 -62825013 - FLAM_A SINE Alu 0 133 5 339 241 48 0 chr9 55039629 55039712 -62822915 + MLT1E3 LTR MaLR 186 272 -352 307 272 11 0 chr9 55039809 55039901 -62822726 + L1ME LINE L1 5627 5719 -402 829 184 37 86 chr9 55040820 55040907 -62821720 - MER8 DNA MER2_type -6 233 143 2237 92 31 0 chr9 55040907 55041199 -62821428 + AluSc SINE Alu 1 301 -8 829 184 37 86 chr9 55041199 55041356 -62821271 - MER8 DNA MER2_type -96 143 1 1404 180 20 10 chr9 55041421 55041716 -62820911 - AluY SINE Alu -11 300 3 435 314 11 22 chr9 55041760 55042000 -62820627 + G-rich Low_complexity Low_complexity 1 237 0 2503 77 0 0 chr9 55042304 55042604 -62820023 - AluY SINE Alu -11 300 1 330 300 68 30 chr9 55042659 55042896 -62819731 - L1ME LINE L1 -346 5775 5530 286 311 91 15 chr9 55042929 55043061 -62819566 + L2 LINE L2 3171 3312 -1 618 300 75 10 chr9 55043221 55043421 -62819206 + MIR SINE MIR 32 244 -18 772 300 110 13 chr9 55043762 55044308 -62818319 - L1ME3A LINE L1 -220 5950 5352 574 263 142 13 chr9 55044727 55044959 -62817668 + MIR SINE MIR 1 262 0 387 287 0 37 chr9 55045117 55045253 -62817374 - MER94 DNA DNA 0 134 4 220 262 0 0 chr9 55045393 55045435 -62817192 + polypyrimidine Low_complexity Low_complexity 3 44 0 576 269 237 18 chr9 55045531 55046184 -62816443 - HAL1 LINE L1 -722 1785 990 1248 21 0 0 chr9 55046365 55046505 -62816122 + AluYa5/8 SINE Alu 168 307 -4 306 329 94 55 chr9 55046685 55047068 -62815559 - HAL1 LINE L1 -2108 399 2 903 136 20 0 chr9 55047454 55047601 -62815026 + MLT1A1 LTR MaLR 171 320 -45 24 53 0 0 chr9 55047649 55047687 -62814940 + AT_rich Low_complexity Low_complexity 1 38 0 741 133 35 0 chr9 55048682 55048795 -62813832 + AluJo SINE Alu 21 137 -175 216 327 24 65 chr9 55050607 55050775 -62811852 + L2 LINE L2 2935 3095 -177 47 44 0 0 chr9 55051284 55051352 -62811275 + AT_rich Low_complexity Low_complexity 1 68 0 2164 101 3 7 chr9 55052275 55052573 -62810054 - AluSx SINE Alu -15 297 1 21 0 0 0 chr9 55052575 55052596 -62810031 + AT_rich Low_complexity Low_complexity 1 21 0 282 98 0 0 chr9 55052998 55053039 -62809588 - L1MB2 LINE L1 -42 6129 6089 446 304 0 18 chr9 55054508 55054620 -62808007 + FLAM_A SINE Alu 1 110 -32 1251 309 103 9 chr9 55055051 55055956 -62806671 + L2 LINE L2 2310 3313 0 2290 60 0 4 chr9 55056407 55056712 -62805915 - AluY SINE Alu 0 304 1 1228 211 68 30 chr9 55057469 55057805 -62804822 + MLT1A2 LTR MaLR 4 352 -22 21 36 0 0 chr9 55057821 55057849 -62804778 + AT_rich Low_complexity Low_complexity 1 28 0 235 368 0 0 chr9 55058203 55058320 -62804307 + L1ME LINE L1 5706 5822 -299 645 268 185 30 chr9 55058479 55058602 -62804025 + L1ME4a LINE L1 5539 5642 -479 1815 157 41 0 chr9 55058602 55058895 -62803732 + AluJo SINE Alu 1 305 -7 645 268 185 30 chr9 55058895 55059230 -62803397 + L1ME4a LINE L1 5642 6068 -53 258 356 89 0 chr9 55059697 55059787 -62802840 + MIR3 SINE MIR 1 98 -110 287 216 127 26 chr9 55059929 55060164 -62802463 - Charlie7 DNA MER1_type 0 2612 5 821 245 57 9 chr9 55060442 55060654 -62801973 - MIR SINE MIR -35 227 6 1008 222 41 0 chr9 55060675 55060869 -62801758 - MER58A DNA MER1_type -20 204 3 2214 101 0 10 chr9 55062054 55062351 -62800276 - AluY SINE Alu -17 294 1 452 129 0 52 chr9 55064012 55064103 -62798524 - AluJo SINE Alu -22 280 221 718 150 235 13 chr9 55064103 55064256 -62798371 - AluJo SINE Alu -124 188 2 207 269 45 0 chr9 55064397 55064464 -62798163 + L2 LINE L2 3203 3272 0 2201 87 0 65 chr9 55064886 55065208 -62797419 - AluSq SINE Alu -12 301 1 2703 51 0 0 chr9 55065749 55066060 -62796567 + AluSx SINE Alu 1 311 -1 2220 83 0 26 chr9 55067130 55067443 -62795184 + AluSq SINE Alu 1 305 -8 396 286 68 7 chr9 55067756 55067903 -62794724 - MIR SINE MIR -5 257 102 225 325 48 61 chr9 55068127 55068505 -62794122 - L1ME3 LINE L1 -64 6098 5726 200 343 64 37 chr9 55068545 55068872 -62793755 + L2 LINE L2 1960 2295 -1019 287 299 51 34 chr9 55069234 55069351 -62793276 + L2 LINE L2 3182 3300 -13 2556 111 37 0 chr9 55070166 55070517 -62792110 + THE1B LTR MaLR 1 364 0 311 318 53 92 chr9 55071068 55071344 -62791283 + L2 LINE L2 2929 3189 -83 2323 102 0 0 chr9 55071344 55071649 -62790978 - AluSg SINE Alu -5 305 1 311 318 53 92 chr9 55071649 55071730 -62790897 + L2 LINE L2 3189 3272 0 207 278 120 60 chr9 55072259 55072392 -62790235 + L2 LINE L2 3132 3272 0 41 0 0 0 chr9 55072695 55072736 -62789891 + AT_rich Low_complexity Low_complexity 1 41 0 286 225 32 110 chr9 55073052 55073206 -62789421 - MLT1H LTR MaLR 0 582 454 2247 241 44 41 chr9 55073632 55073852 -62788775 + L1ME3A LINE L1 1741 1959 -4256 1828 158 25 0 chr9 55073852 55074137 -62788490 + AluJb SINE Alu 2 293 -19 2247 241 44 41 chr9 55074137 55074835 -62787792 + L1ME3A LINE L1 1959 2624 -3591 1374 199 72 7 chr9 55074835 55075126 -62787501 + AluJo SINE Alu 1 310 -2 2247 241 44 41 chr9 55075126 55075316 -62787311 + L1ME3A LINE L1 2624 2812 -3403 3127 175 52 16 chr9 55075318 55075958 -62786669 + L1MB8 LINE L1 5514 6176 -2 959 172 0 0 chr9 55076025 55076182 -62786445 + AluJb SINE Alu 135 291 -21 1400 181 24 47 chr9 55076274 55076572 -62786055 - AluJo SINE Alu -17 295 5 639 216 0 0 chr9 55076629 55076754 -62785873 + L1MC5 LINE L1 7321 7445 -516 1861 181 23 0 chr9 55077151 55077455 -62785172 + AluJo SINE Alu 1 311 -1 1009 271 81 29 chr9 55077456 55077680 -62784947 + L1ME3A LINE L1 4469 4680 -1535 207 0 0 0 chr9 55077680 55077703 -62784924 + (TG)n Simple_repeat Simple_repeat 1 23 0 1009 271 81 29 chr9 55077703 55077999 -62784628 + L1ME3A LINE L1 4680 5016 -1199 5122 136 31 13 chr9 55078215 55079372 -62783255 - HERVH LTR ERV1 -6650 1063 1 2882 91 98 2 chr9 55079374 55079783 -62782844 - LTR7 LTR ERV1 -2 448 1 410 245 110 35 chr9 55080466 55080637 -62781990 + L1ME3A LINE L1 5062 5219 -1012 1873 155 0 35 chr9 55080637 55080953 -62781674 + AluJb SINE Alu 1 305 -7 410 245 110 35 chr9 55080953 55081191 -62781436 + L1ME3A LINE L1 5219 5498 -733 1860 262 125 25 chr9 55081234 55081694 -62780933 + L1ME3A LINE L1 5479 6032 -207 2248 248 67 23 chr9 55081694 55082258 -62780369 - MLT1E LTR MaLR -4 589 1 1860 262 125 25 chr9 55082258 55082485 -62780142 + L1ME3A LINE L1 6032 6235 -4 1653 172 0 56 chr9 55082504 55082824 -62779803 + AluJo SINE Alu 11 312 0 1189 107 0 0 chr9 55082848 55082997 -62779630 + AluSx SINE Alu 35 183 -129 276 260 48 25 chr9 55083204 55083226 -62779401 + MIR SINE MIR 19 39 -169 2471 110 48 20 chr9 55083226 55083580 -62779047 + THE1B LTR MaLR 1 364 0 276 260 48 25 chr9 55083580 55083638 -62778989 + MIR SINE MIR 39 95 -113 6253 135 64 39 chr9 55087228 55087865 -62774762 + Tigger3b DNA MER2_type 1 620 -2408 2184 116 7 3 chr9 55087865 55088167 -62774460 - AluSx SINE Alu -9 303 1 2464 52 0 29 chr9 55088175 55088481 -62774146 - AluY SINE Alu -14 297 1 6253 135 64 39 chr9 55088481 55089023 -62773604 + Tigger3b DNA MER2_type 626 1219 -12 315 321 75 19 chr9 55089064 55089223 -62773404 + MLT1G LTR MaLR 7 174 -421 695 216 0 29 chr9 55089224 55089363 -62773264 - MLT1C LTR MaLR 0 467 333 1822 185 18 29 chr9 55089365 55089748 -62772879 - MLT1C LTR MaLR -48 419 41 876 274 208 11 chr9 55089738 55090117 -62772510 + MLT1G LTR MaLR 137 590 0 * 324 273 109 16 chr9 55090369 55090497 -62772130 + MIR SINE MIR 28 167 -95 716 113 33 47 chr9 55091959 55092109 -62770518 + MER53 DNA DNA 1 148 -41 288 0 0 0 chr9 55092492 55092524 -62770103 + (T)n Simple_repeat Simple_repeat 1 32 0 1296 134 52 60 chr9 55094683 55094915 -62767712 - MER30 DNA MER1_type 0 230 1 2158 33 0 0 chr9 55095256 55095497 -62767130 + L1PA4 LINE L1 5912 6152 -3 480 229 33 16 chr9 55096027 55096149 -62766478 - MER5B DNA MER1_type -54 124 1 541 168 236 0 chr9 55096839 55097030 -62765597 + Charlie4a DNA MER1_type 197 432 -76 32468 112 10 53 chr9 55098058 55099550 -62763077 - L1PA7 LINE L1 0 6154 4600 2399 87 0 7 chr9 55099550 55099859 -62762768 + AluY SINE Alu 1 307 -4 32468 112 10 53 chr9 55099859 55104801 -62757826 - L1PA7 LINE L1 -1554 4600 1 228 200 0 22 chr9 55105297 55105342 -62757285 - Charlie4 DNA MER1_type -1159 802 759 302 298 99 0 chr9 55105498 55105619 -62757008 - MER5A DNA MER1_type -56 133 1 363 175 0 0 chr9 55105784 55105847 -62756780 - MER46C DNA MER2_type -1 337 275 259 127 18 55 chr9 55106061 55106116 -62756511 + Alu SINE Alu 245 292 -9 2027 141 3 7 chr9 55106116 55106420 -62756207 + AluSq SINE Alu 1 303 -10 379 312 146 62 chr9 55106461 55106926 -62755701 - HAL1 LINE L1 -741 1766 1263 306 327 34 24 chr9 55106959 55107164 -62755463 - L1MEd LINE L1 -5018 1101 895 200 268 0 0 chr9 55107921 55107977 -62754650 + (CATTT)n Simple_repeat Simple_repeat 5 60 0 284 272 24 107 chr9 55107998 55108167 -62754460 + MIR SINE MIR 16 170 -92 463 280 64 41 chr9 55108188 55108599 -62754028 - MLT1G1 LTR MaLR -15 580 113 400 273 27 0 chr9 55108637 55108747 -62753880 - LTR16C LTR ERVL -366 125 13 360 0 0 0 chr9 55108845 55108885 -62753742 + (TGAA)n Simple_repeat Simple_repeat 2 41 0 969 250 22 40 chr9 55108947 55109175 -62753452 + MER58A DNA MER1_type 1 224 0 207 193 35 18 chr9 55109212 55109269 -62753358 + T-rich Low_complexity Low_complexity 2 59 0 915 296 41 53 chr9 55109561 55110028 -62752599 - LTR67 LTR ERVL -1 556 96 307 267 9 35 chr9 55110405 55110521 -62752106 - L2 LINE L2 -1605 1709 1597 1900 156 45 27 chr9 55110626 55110960 -62751667 - THE1B LTR MaLR 0 364 25 1092 136 14 56 chr9 55111226 55111440 -62751187 - MER20 DNA MER1_type 0 219 15 1939 110 3 57 chr9 55111591 55111890 -62750737 + AluSx SINE Alu 1 283 -29 415 0 0 0 chr9 55111890 55111936 -62750691 + (CAAAA)n Simple_repeat Simple_repeat 2 110 0 1022 151 0 73 chr9 55111991 55112170 -62750457 + FRAM SINE Alu 1 166 0 2182 101 3 7 chr9 55112396 55112682 -62749945 + AluSg SINE Alu 1 285 -25 570 125 0 0 chr9 55114955 55115035 -62747592 - AluSg/x SINE Alu -148 164 85 213 0 81 0 chr9 55115084 55115121 -62747506 + (TTTG)n Simple_repeat Simple_repeat 4 43 0 301 330 74 44 chr9 55115638 55115935 -62746692 + L1ME4a LINE L1 2266 2571 -3575 2113 129 3 16 chr9 55115937 55116248 -62746379 + AluSx SINE Alu 2 308 -4 2860 75 92 2 chr9 55116443 55116854 -62745773 - LTR7 LTR ERV1 -2 448 1 2172 106 48 13 chr9 55116854 55117231 -62745396 - HERVH LTR ERV1 0 7713 7324 1194 147 43 0 chr9 55117231 55117442 -62745185 - HERVH LTR ERV1 -1894 5819 5600 1178 171 5 0 chr9 55117443 55117654 -62744973 - HERVH LTR ERV1 -2564 5149 4938 21 36 0 0 chr9 55117908 55117936 -62744691 + AT_rich Low_complexity Low_complexity 1 28 0 306 200 35 47 chr9 55118138 55118223 -62744404 + L1ME4a LINE L1 3095 3178 -2968 518 344 31 45 chr9 55119840 55120114 -62742513 + L1ME4a LINE L1 3191 3458 -2688 2184 122 6 3 chr9 55120114 55120426 -62742201 + AluSq SINE Alu 1 313 0 518 344 31 45 chr9 55120426 55120572 -62742055 + L1ME4a LINE L1 3458 3605 -2541 256 277 73 79 chr9 55120592 55120935 -62741692 + L1ME4a LINE L1 3625 3965 -2181 307 325 70 3 chr9 55120970 55121219 -62741408 - LTR16A LTR ERVL -21 429 102 434 266 104 62 chr9 55121343 55121602 -62741025 + L1ME4a LINE L1 4100 4369 -1777 478 341 97 69 chr9 55121645 55122182 -62740445 + L1MEd LINE L1 12 580 -5539 2161 126 3 0 chr9 55122182 55122484 -62740143 + AluSq SINE Alu 1 303 -10 478 341 97 69 chr9 55122484 55122741 -62739886 + L1MEd LINE L1 580 828 -5291 1447 265 74 29 chr9 55122787 55123368 -62739259 + MLT1L LTR MaLR 7 613 -2 562 280 57 20 chr9 55123430 55123780 -62738847 + L1MEd LINE L1 895 1257 -4862 389 305 80 64 chr9 55124050 55124867 -62737760 + L1MEc LINE L1 45 874 -5522 2741 118 5 7 chr9 55124879 55125312 -62737315 - MER9 LTR ERVK 0 511 80 186 43 0 0 chr9 55125353 55125376 -62737251 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 5589 138 24 12 chr9 55125378 55125398 -62737229 - L1MA7 LINE L1 -7 6284 6266 288 0 0 0 chr9 55125398 55125430 -62737197 + (TAGA)n Simple_repeat Simple_repeat 3 34 0 5589 138 24 12 chr9 55125430 55126427 -62736200 - L1MA7 LINE L1 -25 6266 5255 258 245 43 0 chr9 55126431 55126525 -62736102 - L1M4 LINE L1 -945 5201 5104 307 264 31 82 chr9 55126897 55127056 -62735571 + MLT1J LTR MaLR 4 192 -296 226 279 97 19 chr9 55127222 55127480 -62735147 + L1ME4a LINE L1 4938 5215 -931 340 295 116 21 chr9 55127723 55127913 -62734714 + L1ME4a LINE L1 5732 5939 -182 2102 114 0 4 chr9 55129734 55130015 -62732612 + AluSx SINE Alu 1 280 -32 216 0 0 0 chr9 55130015 55130039 -62732588 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 257 240 29 48 chr9 55130380 55130484 -62732143 + L1ME4a LINE L1 5969 6070 -51 192 125 0 0 chr9 55130491 55130523 -62732104 + (T)n Simple_repeat Simple_repeat 1 32 0 250 183 98 12 chr9 55130792 55130874 -62731753 - MLT1L LTR MaLR -20 595 507 542 273 88 48 chr9 55130883 55131112 -62731515 - MLT1L LTR MaLR -174 337 110 190 370 0 0 chr9 55131256 55131329 -62731298 + L3b LINE CR1 1191 1263 -320 283 292 138 8 chr9 55131440 55131570 -62731057 - MIR SINE MIR -24 238 92 195 42 0 0 chr9 55131636 55131660 -62730967 + (CAA)n Simple_repeat Simple_repeat 2 25 0 2164 109 0 30 chr9 55131799 55132103 -62730524 + AluSx SINE Alu 1 295 -17 976 114 0 158 chr9 55132128 55132356 -62730271 - 7SK RNA RNA -1 192 1 2842 53 3 8 chr9 55132430 55132790 -62729837 + L1PA6 LINE L1 5795 6152 -2 25 0 0 0 chr9 55133130 55133155 -62729472 + AT_rich Low_complexity Low_complexity 1 25 0 741 256 32 90 chr9 55133300 55133768 -62728859 - HAL1 LINE L1 -214 2293 1853 2166 274 147 35 chr9 55133774 55135222 -62727405 - HAL1 LINE L1 -896 1611 1 207 0 0 0 chr9 55135442 55135465 -62727162 + (TG)n Simple_repeat Simple_repeat 2 24 0 2505 63 0 0 chr9 55137138 55137439 -62725188 + AluY SINE Alu 1 301 -10 1492 295 76 44 chr9 55137566 55138512 -62724115 + L1MEc LINE L1 37 1056 -5340 2192 126 7 0 chr9 55138512 55138813 -62723814 + AluSp SINE Alu 1 303 -10 1492 295 76 44 chr9 55138813 55139466 -62723161 + L1MEc LINE L1 1056 1687 -4709 5402 253 57 6 chr9 55139467 55141736 -62720891 + L1MEc LINE L1 1974 4316 -1899 51 17 0 0 chr9 55141828 55141886 -62720741 + AT_rich Low_complexity Low_complexity 1 58 0 6089 107 8 5 chr9 55141891 55143858 -62718769 - L1PA14 LINE L1 -1 6160 4193 405 237 19 0 chr9 55143895 55144051 -62718576 + L1MEc LINE L1 4370 4528 -1687 * 503 249 73 0 chr9 55144044 55144221 -62718406 + L1ME1 LINE L1 3262 3451 -2764 * 1179 207 53 0 chr9 55144217 55144540 -62718087 + L1ME1 LINE L1 4526 4865 -1350 330 153 0 0 chr9 55144643 55144702 -62717925 + (CCTA)n Simple_repeat Simple_repeat 1 59 0 2854 227 66 33 chr9 55144708 55144925 -62717702 + L1ME1 LINE L1 4875 5084 -1151 2128 140 7 3 chr9 55144925 55145233 -62717394 + AluSx SINE Alu 1 309 -3 2854 227 66 33 chr9 55145233 55145653 -62716974 + L1ME1 LINE L1 5084 5489 -746 2437 67 3 0 chr9 55145653 55145952 -62716675 - AluY SINE Alu -11 300 1 2854 227 66 33 chr9 55145952 55146614 -62716013 + L1ME1 LINE L1 5489 6207 -28 207 0 0 0 chr9 55148080 55148103 -62714524 + (A)n Simple_repeat Simple_repeat 1 23 0 964 268 73 30 chr9 55148204 55148574 -62714053 + MLT1I LTR MaLR 1 386 -23 198 0 0 0 chr9 55148702 55148724 -62713903 + (T)n Simple_repeat Simple_repeat 1 22 0 1149 91 0 0 chr9 55148893 55149036 -62713591 - AluSq SINE Alu -23 290 148 1052 244 84 36 chr9 55149601 55150048 -62712579 + MLT1G LTR MaLR 67 579 -11 2164 133 5 60 chr9 55150048 55150365 -62712262 + MLT1B LTR MaLR 1 334 -56 1613 169 132 60 chr9 55150365 55150428 -62712199 + MSTB1 LTR MaLR 1 58 -374 1786 186 3 3 chr9 55150428 55150724 -62711903 + AluJo SINE Alu 7 302 -10 2208 119 0 16 chr9 55150727 55151039 -62711588 + AluSx SINE Alu 1 307 -5 1613 169 132 60 chr9 55151039 55151374 -62711253 + MSTB1 LTR MaLR 59 432 0 2164 133 5 60 chr9 55151374 55151469 -62711158 + MLT1B LTR MaLR 334 390 0 241 260 0 39 chr9 55151861 55151965 -62710662 + LTR67 LTR ERVL 458 557 0 1017 272 27 10 chr9 55152868 55153153 -62709474 + MLT1I LTR MaLR 101 393 -16 2007 128 44 22 chr9 55153153 55153520 -62709107 - THE1C LTR MaLR 0 375 1 6041 59 133 65 chr9 55155025 55156119 -62706508 - MER11A LTR ERVK 0 1266 1 821 156 0 15 chr9 55156396 55156531 -62706096 - FLAM_A SINE Alu 0 133 1 1770 177 23 3 chr9 55156801 55157101 -62705526 + AluSx SINE Alu 1 306 -6 527 249 72 48 chr9 55157113 55157447 -62705180 + L1MC4 LINE L1 7568 7909 -133 349 322 48 29 chr9 55157548 55157756 -62704871 + L3 LINE CR1 1178 1389 -188 2133 140 47 19 chr9 55157954 55158319 -62704308 + THE1C LTR MaLR 1 375 0 498 214 34 87 chr9 55158386 55158499 -62704128 - L1M4 LINE L1 -2281 3865 3766 22269 38 8 2 chr9 55158499 55159835 -62702792 - L1PA4 LINE L1 -1 6154 4828 267 31 0 0 chr9 55159835 55159867 -62702760 + (TTCTG)n Simple_repeat Simple_repeat 3 34 0 22269 38 8 2 chr9 55159867 55162083 -62700544 - L1PA4 LINE L1 -1327 4828 2583 498 214 34 87 chr9 55162083 55162175 -62700452 - L1M4 LINE L1 -2380 3766 3671 439 324 87 45 chr9 55162230 55162492 -62700135 - L2 LINE L2 -64 3249 3000 1929 132 12 47 chr9 55162492 55162811 -62699816 + AluSx SINE Alu 1 308 -4 439 324 87 45 chr9 55162811 55163069 -62699558 - L2 LINE L2 -313 3000 2716 288 301 154 15 chr9 55163076 55163212 -62699415 - MIR SINE MIR -100 162 8 423 307 110 20 chr9 55163828 55164000 -62698627 + MIR3 SINE MIR 16 199 -9 2624 56 0 0 chr9 55164057 55164361 -62698266 - AluY SINE Alu -7 304 1 656 309 62 0 chr9 55165986 55166196 -62696431 + MIR SINE MIR 18 240 -22 2119 139 0 0 chr9 55166196 55166498 -62696129 - AluJb SINE Alu -10 302 1 186 103 0 0 chr9 55166527 55166556 -62696071 + (TTG)n Simple_repeat Simple_repeat 1 29 0 335 269 72 83 chr9 55166592 55166785 -62695842 - MIR3 SINE MIR -1 207 17 531 264 87 66 chr9 55167824 55168437 -62694190 - L1MC4a LINE L1 -359 5803 5258 1319 156 5 0 chr9 55168771 55168982 -62693645 - AluJb SINE Alu -6 306 95 541 272 61 30 chr9 55169015 55169409 -62693218 - L1MC4a LINE L1 -1304 4842 4437 288 355 8 0 chr9 55169475 55169599 -62693028 + GA-rich Low_complexity Low_complexity 1 125 0 206 244 0 0 chr9 55169603 55169644 -62692983 - L2 LINE L2 -17 3296 3256 403 276 211 20 chr9 55169748 55169947 -62692680 + MIR SINE MIR 20 256 -6 447 248 106 14 chr9 55170667 55170808 -62691819 + MIR SINE MIR 36 189 -73 22 0 0 0 chr9 55170986 55171008 -62691619 + AT_rich Low_complexity Low_complexity 1 22 0 647 184 7 59 chr9 55171069 55171221 -62691406 + L2 LINE L2 2512 2655 -659 317 155 0 35 chr9 55171221 55171279 -62691348 + MARNA DNA Mariner 425 480 -106 2792 255 82 40 chr9 55171308 55171955 -62690672 - L2 LINE L2 0 3313 2695 940 164 49 16 chr9 55171955 55172138 -62690489 - MER5A DNA MER1_type 0 189 1 2792 255 82 40 chr9 55172138 55172791 -62689836 - L2 LINE L2 -618 2695 1992 2534 269 123 20 chr9 55174269 55175477 -62687150 - L2 LINE L2 -5 3308 1970 2288 108 3 6 chr9 55175599 55175913 -62686714 + AluSq SINE Alu 1 313 0 26 50 0 0 chr9 55176000 55176040 -62686587 + AT_rich Low_complexity Low_complexity 1 40 0 226 267 214 30 chr9 55176233 55176364 -62686263 + MER5B DNA MER1_type 1 155 -23 775 202 107 65 chr9 55176624 55176886 -62685741 + Charlie8 DNA MER1_type 1 273 -2144 233 265 15 0 chr9 55177034 55177102 -62685525 + Charlie8 DNA MER1_type 2341 2409 -8 1045 205 65 65 chr9 55177162 55177478 -62685149 + L1ME2 LINE L1 5792 6110 -56 2153 91 52 0 chr9 55177478 55177765 -62684862 - AluSp SINE Alu -11 302 1 1045 205 65 65 chr9 55177765 55177818 -62684809 + L1ME2 LINE L1 6109 6161 -5 180 0 0 0 chr9 55177933 55177953 -62684674 + (AATAG)n Simple_repeat Simple_repeat 3 22 0 206 175 0 25 chr9 55178205 55178245 -62684382 + CT-rich Low_complexity Low_complexity 2 40 0 252 280 65 9 chr9 55178612 55178719 -62683908 + LTR16C LTR ERVL 3 115 -376 1104 213 86 38 chr9 55178725 55179102 -62683525 - L1ME LINE L1 -605 5561 5130 2164 138 0 28 chr9 55179102 55179422 -62683205 - AluSx SINE Alu -1 311 1 1104 213 86 38 chr9 55179422 55179661 -62682966 - L1ME LINE L1 -1036 5130 4904 2402 87 0 0 chr9 55179802 55180101 -62682526 + AluSg SINE Alu 1 299 -11 349 306 167 10 chr9 55180141 55180567 -62682060 - L1ME3A LINE L1 -303 5867 5374 288 234 13 13 chr9 55180831 55180908 -62681719 - L1ME LINE L1 -467 5697 5621 872 150 23 0 chr9 55183231 55183364 -62679263 - FLAM_C SINE Alu -6 137 2 1894 134 3 62 chr9 55183782 55184103 -62678524 + AluSx SINE Alu 1 302 -10 355 286 34 25 chr9 55184885 55185004 -62677623 - MIR3 SINE MIR -1 207 88 7515 29 3 0 chr9 55185692 55186896 -62675731 + L1PA3 LINE L1 4946 6152 -3 24 53 0 0 chr9 55187080 55187118 -62675509 + AT_rich Low_complexity Low_complexity 1 38 0 1441 163 126 18 chr9 55187214 55187559 -62675068 + MLT2D LTR ERVL 3 534 -20 465 307 11 40 chr9 55187652 55187828 -62674799 - MIR SINE MIR -85 177 7 261 265 176 52 chr9 55187968 55188104 -62674523 - MIR3 SINE MIR -41 167 15 1349 174 18 0 chr9 55189347 55189571 -62673056 + AluJb SINE Alu 85 312 0 462 36 0 0 chr9 55189571 55189627 -62673000 + (GGAA)n Simple_repeat Simple_repeat 1 56 0 1844 155 127 41 chr9 55190110 55190339 -62672288 - MSTA LTR MaLR 0 428 220 2246 129 0 3 chr9 55190339 55190650 -62671977 - AluSg SINE Alu 0 310 1 1844 155 127 41 chr9 55190650 55190814 -62671813 - MSTA LTR MaLR -208 220 1 263 290 169 16 chr9 55191053 55191177 -62671450 + MIR SINE MIR 119 261 -1 466 337 29 37 chr9 55191800 55192046 -62670581 - MIR SINE MIR 0 262 19 182 352 9 28 chr9 55192637 55192745 -62669882 - MIR SINE MIR -20 242 137 * 216 273 23 57 chr9 55192732 55192820 -62669807 - L2 LINE L2 0 3313 3229 315 315 9 45 chr9 55192871 55192982 -62669645 - MIR3 SINE MIR -49 159 53 417 316 165 22 chr9 55193412 55193817 -62668810 - MLT1K LTR MaLR -24 564 102 2285 65 4 0 chr9 55193915 55194220 -62668407 + AluSc SINE Alu 1 306 0 310 151 19 179 chr9 55194335 55194441 -62668186 + MER91C DNA MER1_type 34 122 -18 2121 84 32 3 chr9 55196201 55196486 -62666141 - AluSc SINE Alu -4 305 13 576 168 93 0 chr9 55196495 55196656 -62665971 - L1MC3 LINE L1 0 7785 7610 690 237 53 6 chr9 55196848 55197017 -62665610 - MIR SINE MIR -5 257 81 1563 176 22 89 chr9 55197157 55197406 -62665221 - MLT1B LTR MaLR 0 390 179 2393 99 0 0 chr9 55197406 55197710 -62664917 + AluSg SINE Alu 1 304 -6 1563 176 22 89 chr9 55197710 55197876 -62664751 - MLT1B LTR MaLR -211 179 3 183 42 0 0 chr9 55197953 55197977 -62664650 + (TTG)n Simple_repeat Simple_repeat 2 25 0 258 86 0 0 chr9 55197981 55198016 -62664611 - AluJo SINE Alu -12 290 256 896 200 6 12 chr9 55198020 55198180 -62664447 - AluJo SINE Alu -153 159 1 2177 112 0 7 chr9 55198434 55198730 -62663897 + AluSx SINE Alu 3 296 -16 354 91 0 0 chr9 55198989 55199044 -62663583 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 207 286 0 0 chr9 55200830 55200879 -62661748 + (CATA)n Simple_repeat Simple_repeat 1 49 0 2093 118 0 0 chr9 55201175 55201481 -62661146 - AluSx SINE Alu 0 307 2 2010 141 7 3 chr9 55201942 55202247 -62660380 + AluSx SINE Alu 1 306 -6 182 319 106 32 chr9 55202370 55202464 -62660163 - L2 LINE L2 -79 3193 3093 292 263 183 0 chr9 55202486 55202623 -62660004 + LTR16C LTR ERVL 69 230 -261 492 148 0 0 chr9 55202623 55202704 -62659923 + AluJ/FRAM SINE Alu 220 300 -12 527 215 166 43 chr9 55202767 55202930 -62659697 + MER5A DNA MER1_type 7 189 0 460 273 33 0 chr9 55202934 55203084 -62659543 + LTR16C LTR ERVL 280 434 -57 1829 143 25 0 chr9 55203464 55203750 -62658877 - AluJb SINE Alu -15 297 5 1040 196 65 12 chr9 55204178 55204423 -62658204 - MER68 LTR ERV1 0 562 305 585 42 0 0 chr9 55206973 55207045 -62655582 + (CATTT)n Simple_repeat Simple_repeat 4 75 0 2048 124 3 0 chr9 55207045 55207328 -62655299 - AluY SINE Alu -27 284 1 198 0 0 0 chr9 55207721 55207743 -62654884 + (CCA)n Simple_repeat Simple_repeat 3 24 0 474 333 118 25 chr9 55208560 55208966 -62653661 + L3 LINE CR1 1132 1575 -2 589 294 71 55 chr9 55210194 55210645 -62651982 + HAL1b LINE L1 91 556 -792 1911 121 106 0 chr9 55210645 55210918 -62651709 - AluSg SINE Alu -8 302 1 589 294 71 55 chr9 55210918 55211103 -62651524 + HAL1b LINE L1 556 737 -611 1679 51 0 5 chr9 55211786 55212002 -62650625 - L1PA4 LINE L1 -1 6154 5940 23 0 0 0 chr9 55212060 55212083 -62650544 + AT_rich Low_complexity Low_complexity 1 23 0 680 238 153 0 chr9 55212220 55212409 -62650218 + MER58A DNA MER1_type 1 218 -6 1962 110 60 0 chr9 55212816 55213097 -62649530 + AluSg SINE Alu 1 298 -12 384 284 206 40 chr9 55213271 55213292 -62649335 + L1ME4a LINE L1 2452 2468 -3678 3068 165 53 17 chr9 55213292 55213873 -62648754 + MER7C DNA MER2_type 1 602 0 384 284 206 40 chr9 55213873 55214443 -62648184 + L1ME4a LINE L1 2468 3141 -3005 1140 185 104 30 chr9 55214447 55214745 -62647882 + L1ME4a LINE L1 4859 5178 -968 2161 104 13 3 chr9 55214877 55215184 -62647443 + AluY SINE Alu 1 310 -1 315 71 0 0 chr9 55215415 55215457 -62647170 + (TTATG)n Simple_repeat Simple_repeat 1 42 0 711 279 34 15 chr9 55215612 55215816 -62646811 + MER63A DNA MER1_type 3 210 0 299 204 80 18 chr9 55216272 55216385 -62646242 + L1P5 LINE L1 5315 5434 -717 485 328 18 24 chr9 55216443 55216775 -62645852 + L1ME4a LINE L1 5548 5877 -244 28 61 0 0 chr9 55216868 55216917 -62645710 + AT_rich Low_complexity Low_complexity 1 49 0 2341 103 0 3 chr9 55218114 55218425 -62644202 + AluSx SINE Alu 1 310 -2 1815 143 86 0 chr9 55219519 55219798 -62642829 - AluJb SINE Alu -8 304 2 281 229 16 0 chr9 55220893 55220954 -62641673 - MIR3 SINE MIR -15 193 132 251 226 0 98 chr9 55222481 55222583 -62640044 - MER51-int LTR ERV1 -6495 1321 1230 215 154 128 0 chr9 55223373 55223412 -62639215 + L2 LINE L2 3258 3301 -12 473 264 9 0 chr9 55225966 55226072 -62636555 - L2 LINE L2 0 3313 3207 1527 131 0 0 chr9 55226171 55226393 -62636234 + AluSp SINE Alu 79 300 -13 26 0 0 0 chr9 55226928 55226954 -62635673 + AT_rich Low_complexity Low_complexity 1 26 0 343 36 0 36 chr9 55229496 55229551 -62633076 + (TG)n Simple_repeat Simple_repeat 2 54 0 22 0 0 0 chr9 55229553 55229575 -62633052 + GC_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr9 55229618 55229646 -62632981 + GC_rich Low_complexity Low_complexity 1 28 0 323 224 124 90 chr9 55229922 55230123 -62632504 - L1M2 LINE L1 -5467 1382 1175 189 0 0 0 chr9 55230212 55230233 -62632394 + (CCG)n Simple_repeat Simple_repeat 2 22 0 23 54 0 0 chr9 55230299 55230336 -62632291 + GC_rich Low_complexity Low_complexity 1 37 0 225 94 0 0 chr9 55230443 55230475 -62632152 + (CCCCCG)n Simple_repeat Simple_repeat 5 36 0 224 300 0 12 chr9 55230587 55230667 -62631960 + G-rich Low_complexity Low_complexity 6 84 0 25 51 0 0 chr9 55230908 55230947 -62631680 + GC_rich Low_complexity Low_complexity 1 39 0 196 26 26 53 chr9 55231611 55231649 -62630978 + (TTTTTG)n Simple_repeat Simple_repeat 3 39 0 199 250 80 50 chr9 55232682 55232782 -62629845 + L2 LINE L2 3170 3272 0 312 308 30 75 chr9 55233077 55233210 -62629417 - L2 LINE L2 -1 3271 3145 340 320 140 13 chr9 55233797 55233947 -62628680 + L2 LINE L2 3103 3271 -1 552 224 17 9 chr9 55234862 55234978 -62627649 + L2 LINE L2 3196 3312 -1 878 184 63 45 chr9 55235801 55235875 -62626752 + MER96B DNA MER1_type? 191 262 -155 1690 168 34 0 chr9 55235875 55236167 -62626460 + AluJb SINE Alu 1 302 -10 878 184 63 45 chr9 55236167 55236315 -62626312 + MER96B DNA MER1_type? 262 417 0 1680 179 16 23 chr9 55236847 55237154 -62625473 + AluJb SINE Alu 1 305 -7 757 204 22 39 chr9 55237390 55237571 -62625056 - MER5B DNA MER1_type 0 178 1 395 243 209 15 chr9 55237828 55238091 -62624536 - L1MC4a LINE L1 -1736 6072 5759 569 182 0 11 chr9 55238121 55238209 -62624418 - FRAM SINE Alu -28 148 62 1214 266 43 3 chr9 55238319 55238665 -62623962 - L1ME4a LINE L1 -266 5855 5496 2367 93 0 0 chr9 55240428 55240728 -62621899 + AluY SINE Alu 1 300 -11 2077 117 0 23 chr9 55241142 55241441 -62621186 - AluSx SINE Alu -20 292 1 328 273 172 66 chr9 55241853 55242189 -62620438 - L1ME4a LINE L1 -4 6117 5731 2284 79 27 0 chr9 55242189 55242481 -62620146 - AluSp SINE Alu -9 304 5 328 273 172 66 chr9 55242481 55242540 -62620087 - L1ME4a LINE L1 -390 5731 5680 1476 203 10 14 chr9 55242540 55242831 -62619796 - AluJb SINE Alu -22 290 1 1016 249 111 37 chr9 55243606 55243984 -62618643 - MLT1I LTR MaLR -1 408 3 1136 276 71 35 chr9 55246131 55246736 -62615891 + L1ME4a LINE L1 5492 6118 -3 2161 118 0 0 chr9 55246747 55247043 -62615584 - AluSx SINE Alu -16 296 1 2672 17 26 13 chr9 55247270 55247572 -62615055 + SVA Other Other 1081 1386 0 2243 84 7 7 chr9 55247584 55247882 -62614745 + AluSp SINE Alu 1 298 -15 1419 71 22 0 chr9 55247882 55248056 -62614571 + AluSg/x SINE Alu 126 306 -3 493 149 53 0 chr9 55248075 55248169 -62614458 + L1MB3 LINE L1 6082 6180 -3 5439 148 41 30 chr9 55248179 55248330 -62614297 + L1MC2 LINE L1 5055 5203 -1141 2209 123 3 3 chr9 55248330 55248640 -62613987 + AluSx SINE Alu 1 310 -2 5439 148 41 30 chr9 55248640 55249620 -62613007 + L1MC2 LINE L1 5203 6180 -164 2212 125 0 3 chr9 55249620 55249932 -62612695 - AluSx SINE Alu -1 311 1 299 245 39 39 chr9 55252250 55252352 -62610275 + MLT1I LTR MaLR 96 197 -352 1794 152 25 0 chr9 55252353 55252653 -62609974 - AluSx SINE Alu 0 307 1 324 145 32 59 chr9 55252838 55252950 -62609677 + MLT1I LTR MaLR 317 549 0 1266 279 45 5 chr9 55252992 55253390 -62609237 - LTR16A LTR ERVL -36 414 1 38024 95 8 6 chr9 55253694 55259839 -62602788 + L1PA6 LINE L1 3 6154 0 306 323 113 23 chr9 55260351 55260661 -62601966 - L1ME3A LINE L1 -222 5948 5611 195 333 0 0 chr9 55260762 55260825 -62601802 + L2 LINE L2 3210 3272 0 * 338 283 61 0 chr9 55260824 55260923 -62601704 - MIR SINE MIR -69 139 35 1693 148 14 46 chr9 55260966 55261293 -62601334 + AluJb SINE Alu 8 325 0 2060 138 14 0 chr9 55261424 55261720 -62600907 + AluSx SINE Alu 1 300 -12 23 0 0 0 chr9 55261827 55261850 -62600777 + AT_rich Low_complexity Low_complexity 1 23 0 5051 158 127 95 chr9 55261861 55262524 -62600103 + L1MC3 LINE L1 6411 7052 -733 232 286 13 13 chr9 55262524 55262601 -62600026 + MLT1F1 LTR MaLR 35 111 -456 5051 158 127 95 chr9 55262601 55263155 -62599472 + L1MC3 LINE L1 7052 7750 -35 2477 54 20 0 chr9 55263155 55263453 -62599174 - L1PA7 LINE L1 -4 6150 5847 5051 158 127 95 chr9 55263453 55263491 -62599136 + L1MC3 LINE L1 7750 7785 0 502 230 15 44 chr9 55264667 55264802 -62597825 + MLT1K LTR MaLR 455 585 -3 306 0 0 0 chr9 55264920 55264954 -62597673 + (TG)n Simple_repeat Simple_repeat 1 34 0 561 30 0 0 chr9 55264954 55265021 -62597606 + (TA)n Simple_repeat Simple_repeat 1 67 0 191 228 38 63 chr9 55265446 55265525 -62597102 - MIR SINE MIR -105 157 81 3991 127 117 56 chr9 55265659 55266429 -62596198 - MSTA-int LTR MaLR -596 984 168 730 78 20 10 chr9 55266429 55266531 -62596096 + MER4A LTR ERV1 1 103 -561 * 1972 124 3 16 chr9 55266528 55266874 -62595753 + MER4A LTR ERV1 261 660 -4 1156 116 0 6 chr9 55266876 55267049 -62595578 - MSTA-int LTR MaLR -1479 172 1 1991 157 168 11 chr9 55267049 55267419 -62595208 - MSTA LTR MaLR 0 428 1 330 206 0 0 chr9 55267548 55267621 -62595006 + (TG)n Simple_repeat Simple_repeat 2 74 0 707 257 134 45 chr9 55268338 55268944 -62593683 - L1MC5 LINE L1 -32 7929 7270 236 227 0 0 chr9 55269072 55269116 -62593511 - LTR33 LTR ERVL 0 521 478 326 259 153 60 chr9 55269224 55269440 -62593187 - LTR33 LTR ERVL -240 281 46 182 0 107 0 chr9 55269466 55269494 -62593133 + T-rich Low_complexity Low_complexity 1 31 0 2031 122 7 0 chr9 55269495 55269774 -62592853 - AluSq SINE Alu -32 281 1 254 295 84 0 chr9 55269782 55269877 -62592750 + Charlie8 DNA MER1_type 108 210 -2207 294 241 17 0 chr9 55270454 55270512 -62592115 - MER91 DNA MER1_type -3 137 79 2224 105 17 3 chr9 55270567 55270862 -62591765 - AluSq SINE Alu -14 299 1 25 0 0 0 chr9 55270913 55270938 -62591689 + AT_rich Low_complexity Low_complexity 1 25 0 25 31 0 0 chr9 55271191 55271223 -62591404 + AT_rich Low_complexity Low_complexity 1 32 0 27 0 0 0 chr9 55271815 55271842 -62590785 + AT_rich Low_complexity Low_complexity 1 27 0 358 291 45 8 chr9 55271884 55272018 -62590609 - MIR SINE MIR -3 259 121 1301 249 37 9 chr9 55272900 55273226 -62589401 - HERVL40 LTR ERVL -338 5192 4858 362 301 0 16 chr9 55273622 55273745 -62588882 + GA-rich Low_complexity Low_complexity 4 124 0 225 276 0 0 chr9 55274297 55274355 -62588272 + (TTCA)n Simple_repeat Simple_repeat 1 58 0 354 250 60 0 chr9 55274603 55274687 -62587940 - HERVL40 LTR ERVL -504 5026 4938 397 232 56 24 chr9 55274882 55275007 -62587620 - LTR16C LTR ERVL 0 491 363 726 86 0 0 chr9 55275096 55275189 -62587438 + L1PA4 LINE L1 4 96 -6050 38759 45 5 0 chr9 55275189 55279361 -62583266 + L1PA4 LINE L1 623 4828 -1327 288 0 0 0 chr9 55279361 55279393 -62583234 + (CAGAA)n Simple_repeat Simple_repeat 3 34 0 38759 45 5 0 chr9 55279393 55280726 -62581901 + L1PA4 LINE L1 4828 6153 -2 1360 153 60 43 chr9 55280745 55280771 -62581856 - L1MA8 LINE L1 -10 6281 6257 2312 104 0 0 chr9 55280771 55281069 -62581558 + AluSq SINE Alu 1 298 -15 1360 153 60 43 chr9 55281069 55281324 -62581303 - L1MA8 LINE L1 -34 6257 5995 619 252 122 41 chr9 55281324 55281570 -62581057 - LTR16C LTR ERVL -176 315 50 1084 168 94 159 chr9 55281620 55282036 -62580591 + MSTD LTR MaLR 1 389 -7 670 251 40 17 chr9 55282329 55282504 -62580123 + MIR SINE MIR 31 209 -53 210 37 0 0 chr9 55282836 55282863 -62579764 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 1781 143 69 8 chr9 55282902 55283219 -62579408 + THE1C LTR MaLR 1 394 -34 22995 100 9 12 chr9 55283219 55286520 -62576107 + L1PA6 LINE L1 19 3309 -2837 11461 57 37 1 chr9 55286520 55288655 -62573972 + L1PA6 LINE L1 3955 6154 0 421 89 18 0 chr9 55288658 55288714 -62573913 + THE1C LTR MaLR 319 375 0 435 200 0 0 chr9 55289030 55289110 -62573517 - MER116 DNA Mariner 0 80 1 197 325 60 0 chr9 55289344 55289427 -62573200 - MIR3 SINE MIR -32 176 89 376 257 209 29 chr9 55289726 55289932 -62572695 + MIR SINE MIR 20 262 0 277 240 138 36 chr9 55291084 55291280 -62571347 - L1ME4a LINE L1 -4 6117 5902 2122 139 0 0 chr9 55291342 55291637 -62570990 + AluSx SINE Alu 1 295 -17 1109 231 115 79 chr9 55292352 55292872 -62569755 + MLT1F LTR MaLR 3 541 -1 819 271 21 0 chr9 55292914 55293106 -62569521 + MLT1G LTR MaLR 12 207 -383 1536 183 55 28 chr9 55293106 55293395 -62569232 + AluJb SINE Alu 1 297 -15 492 153 0 0 chr9 55293422 55293507 -62569120 + GA-rich Low_complexity Low_complexity 4 88 0 1020 219 169 14 chr9 55293512 55293790 -62568837 + MLT1G LTR MaLR 197 517 -73 345 185 204 0 chr9 55343812 55343920 -62518707 + MLT1D LTR MaLR 365 494 -11 812 119 0 0 chr9 55344783 55344892 -62517735 + AluY SINE Alu 1 109 -202 1605 209 17 0 chr9 55345613 55345910 -62516717 + AluJb SINE Alu 1 302 -10 23 0 0 0 chr9 55346637 55346660 -62515967 + AT_rich Low_complexity Low_complexity 1 23 0 289 182 0 26 chr9 55346792 55346869 -62515758 + (TA)n Simple_repeat Simple_repeat 2 76 0 535 223 29 51 chr9 55346905 55347080 -62515547 - L1ME3 LINE L1 -17 6145 5975 1096 164 49 4 chr9 55348076 55348155 -62514472 - L1MB1 LINE L1 -1 6167 6093 276 30 0 0 chr9 55348155 55348188 -62514439 + (TA)n Simple_repeat Simple_repeat 1 33 0 * 297 0 0 0 chr9 55348187 55348220 -62514407 + (CA)n Simple_repeat Simple_repeat 2 34 0 1096 164 49 4 chr9 55348188 55348365 -62514262 - L1MB1 LINE L1 -75 6093 5933 2125 141 36 30 chr9 55348392 55348754 -62513873 - THE1B LTR MaLR 0 364 1 245 297 0 0 chr9 55349093 55349157 -62513470 - MLT1L LTR MaLR -205 410 347 287 243 26 22 chr9 55349546 55349664 -62512963 - MLT1H LTR MaLR -268 162 19 841 294 40 4 chr9 55350097 55350345 -62512282 - MIR SINE MIR 0 262 6 2258 199 32 4 chr9 55350904 55351407 -62511220 + Charlie1b DNA MER1_type 7 523 0 2127 134 10 0 chr9 55353097 55353402 -62509225 - AluSx SINE Alu -1 311 4 1234 214 11 14 chr9 55353402 55353687 -62508940 - L1MB5 LINE L1 -75 6099 5816 344 237 38 8 chr9 55353691 55353822 -62508805 - L1ME LINE L1 -3645 2435 2301 1526 179 24 40 chr9 55354004 55354383 -62508244 - LTR52 LTR ERVL -48 373 1 602 159 9 0 chr9 55354455 55354568 -62508059 - L1MCa LINE L1 -5372 1192 1079 5847 129 17 8 chr9 55354568 55355546 -62507081 - Tigger1 DNA MER2_type 0 2418 1432 351 133 0 239 chr9 55355549 55355662 -62506965 - Tigger1 DNA MER2_type -2309 109 24 1746 187 33 29 chr9 55355671 55356120 -62506507 - L1MCa LINE L1 -4967 1078 628 1156 252 182 23 chr9 55356153 55356556 -62506071 - L1MCa LINE L1 -5838 726 388 537 44 0 0 chr9 55356556 55356624 -62506003 + (TCTA)n Simple_repeat Simple_repeat 4 71 0 1658 182 4 18 chr9 55356629 55356909 -62505718 - AluJo SINE Alu -36 276 1 1156 252 182 23 chr9 55356909 55356983 -62505644 - L1MCa LINE L1 -6179 385 166 860 266 66 101 chr9 55357036 55357256 -62505371 - L1ME LINE L1 -4131 2130 1904 2164 121 0 0 chr9 55357256 55357546 -62505081 - AluSp SINE Alu -23 290 1 860 266 66 101 chr9 55357546 55358950 -62503677 - L1ME LINE L1 -4357 1904 388 186 71 0 0 chr9 55359217 55359245 -62503382 + (TG)n Simple_repeat Simple_repeat 1 28 0 367 350 66 15 chr9 55359262 55359536 -62503091 - L1ME LINE L1 -5660 410 123 226 241 9 56 chr9 55360070 55360178 -62502449 + CT-rich Low_complexity Low_complexity 4 106 0 21 0 0 0 chr9 55360287 55360308 -62502319 + AT_rich Low_complexity Low_complexity 1 21 0 304 287 78 9 chr9 55361232 55361347 -62501280 + MER94 DNA DNA 11 133 -1 250 306 31 31 chr9 55362309 55362407 -62500220 + MIR SINE MIR 45 142 -120 1826 178 6 39 chr9 55363498 55363857 -62498770 + MER82 DNA MER2_type 8 354 -299 1137 119 0 0 chr9 55363861 55364012 -62498615 - AluSg/x SINE Alu -10 302 152 1180 210 6 94 chr9 55364012 55364341 -62498286 + MER82 DNA MER2_type 348 647 -6 1467 175 86 7 chr9 55364444 55364724 -62497903 - AluJb SINE Alu -10 302 1 225 321 252 2 chr9 55364724 55364911 -62497716 - MIR SINE MIR -10 252 21 1505 130 50 33 chr9 55365105 55365405 -62497222 + THE1C LTR MaLR 1 305 -70 381 131 0 0 chr9 55367034 55367095 -62495532 + (T)n Simple_repeat Simple_repeat 1 61 0 216 0 0 0 chr9 55367489 55367513 -62495114 + (T)n Simple_repeat Simple_repeat 1 24 0 1878 144 0 19 chr9 55367530 55367843 -62494784 + AluY SINE Alu 1 307 -4 22 35 0 0 chr9 55368306 55368335 -62494292 + AT_rich Low_complexity Low_complexity 1 29 0 340 328 47 31 chr9 55368349 55368477 -62494150 + L2 LINE L2 3138 3267 -5 290 301 186 47 chr9 55368966 55369262 -62493365 + L2 LINE L2 2538 2874 -440 24 0 0 0 chr9 55369348 55369372 -62493255 + AT_rich Low_complexity Low_complexity 1 24 0 1138 323 122 29 chr9 55369582 55370647 -62491980 - L2 LINE L2 -266 3006 1848 419 309 41 124 chr9 55370644 55371006 -62491621 + L2 LINE L2 2937 3268 -4 * 254 307 104 91 chr9 55371079 55371196 -62491431 + L3 LINE CR1 253 367 -1210 1852 108 59 38 chr9 55371196 55371483 -62491144 - AluSx SINE Alu -19 293 1 2037 126 0 3 chr9 55371488 55371773 -62490854 - AluSg SINE Alu -26 284 1 254 307 104 91 chr9 55371773 55371890 -62490737 + L3 LINE CR1 370 496 -1081 262 266 96 11 chr9 55372137 55372231 -62490396 - MIR SINE MIR -51 211 110 180 292 194 0 chr9 55372416 55372488 -62490139 + L2 LINE L2 3227 3312 -1 1438 112 0 0 chr9 55372584 55372772 -62489855 + AluSx SINE Alu 1 188 -124 6701 19 0 0 chr9 55372900 55373619 -62489008 + L1PA2 LINE L1 5437 6155 0 203 246 140 0 chr9 55373708 55373765 -62488862 - MIR3 SINE MIR -3 205 141 343 84 0 127 chr9 55373781 55373811 -62488816 - MSTB1 LTR MaLR 0 432 414 1687 107 27 0 chr9 55373811 55374035 -62488592 + MER30 DNA MER1_type 1 230 0 343 84 0 127 chr9 55374035 55374075 -62488552 - MSTB1 LTR MaLR -18 414 371 640 198 9 0 chr9 55374485 55374601 -62488026 + Tigger7 DNA MER2_type 1 117 -588 * 2413 102 8 20 chr9 55374599 55374953 -62487674 + Tigger7 DNA MER2_type 2238 2587 0 228 248 109 59 chr9 55375245 55375346 -62487281 - L2 LINE L2 -9 3304 3199 366 303 66 0 chr9 55375450 55375572 -62487055 - MIR SINE MIR -56 206 77 2296 141 45 16 chr9 55375870 55376108 -62486519 + MLT1B LTR MaLR 3 258 -132 2810 94 11 0 chr9 55376108 55376468 -62486159 + THE1B LTR MaLR 1 364 0 2296 141 45 16 chr9 55376468 55376606 -62486021 + MLT1B LTR MaLR 258 390 0 521 296 66 61 chr9 55376750 55377142 -62485485 - LTR33 LTR ERVL -125 396 3 198 234 39 65 chr9 55377142 55377219 -62485408 - MIR SINE MIR -113 149 75 393 294 63 0 chr9 55377332 55377458 -62485169 - MIR3 SINE MIR -24 184 51 245 233 0 17 chr9 55378144 55378204 -62484423 + (TA)n Simple_repeat Simple_repeat 2 60 0 621 220 167 7 chr9 55378765 55378915 -62483712 - MER5A DNA MER1_type -7 182 9 917 204 126 20 chr9 55381508 55381826 -62480801 - MER31B LTR ERV1 -1 465 1 2029 132 10 0 chr9 55382242 55382531 -62480096 + AluSx SINE Alu 1 292 -20 2267 144 44 8 chr9 55382830 55383192 -62479435 - THE1C LTR MaLR 0 375 1 340 51 0 0 chr9 55384167 55384206 -62478421 + U6 snRNA snRNA 1 39 -68 279 0 0 0 chr9 55384908 55384939 -62477688 + (TG)n Simple_repeat Simple_repeat 2 32 0 5619 195 46 33 chr9 55385826 55386430 -62476197 - Charlie1a DNA MER1_type -1428 1333 738 2160 107 13 3 chr9 55386430 55386728 -62475899 + AluSx SINE Alu 1 301 -11 5619 195 46 33 chr9 55386728 55387439 -62475188 - Charlie1a DNA MER1_type -2023 738 1 455 277 118 26 chr9 55387715 55388052 -62474575 + MLT1J1 LTR MaLR 71 403 -6 2355 72 13 3 chr9 55388880 55389184 -62473443 - AluY SINE Alu -4 307 1 324 159 174 0 chr9 55389262 55389331 -62473296 - L2 LINE L2 -3 3269 3189 962 271 52 35 chr9 55389419 55389762 -62472865 - MLT1I LTR MaLR -35 374 26 346 363 35 47 chr9 55389944 55390200 -62472427 + L2 LINE L2 3015 3267 -5 581 183 40 8 chr9 55391375 55391501 -62471126 - MER3 DNA MER1_type -26 183 54 225 329 12 0 chr9 55391552 55391637 -62470990 + Charlie7 DNA MER1_type 7 92 -2520 689 260 69 78 chr9 55391643 55391962 -62470665 - LTR16A LTR ERVL -18 432 117 246 275 14 35 chr9 55392028 55392170 -62470457 + Charlie7 DNA MER1_type 2470 2608 -4 513 133 0 0 chr9 55392297 55392395 -62470232 + (TTCC)n Simple_repeat Simple_repeat 1 98 0 1501 178 57 32 chr9 55392887 55393240 -62469387 + MLT1A1 LTR MaLR 1 363 -2 361 277 111 101 chr9 55393416 55393723 -62468904 - MER102a DNA MER1_type -2 328 19 540 68 0 0 chr9 55394602 55394675 -62467952 + (TCCA)n Simple_repeat Simple_repeat 1 73 0 473 310 69 5 chr9 55395397 55395600 -62467027 - MIR SINE MIR -18 244 29 1583 220 21 52 chr9 55396071 55396453 -62466174 + MLT1A2 LTR MaLR 1 370 -4 246 376 29 41 chr9 55397621 55397791 -62464836 + MIR SINE MIR 14 181 -81 214 250 0 0 chr9 55397843 55397887 -62464740 + CT-rich Low_complexity Low_complexity 5 48 0 1531 289 68 31 chr9 55398577 55399392 -62463235 - HAL1 LINE L1 -1471 1036 4 4158 153 24 6 chr9 55399669 55400373 -62462254 + L1MA4 LINE L1 5584 6300 0 889 310 51 36 chr9 55401094 55401569 -62461058 - L2 LINE L2 -18 3295 2783 2413 90 0 10 chr9 55401714 55402025 -62460602 - AluSc SINE Alu -1 308 1 28 79 0 0 chr9 55402251 55402314 -62460313 + AT_rich Low_complexity Low_complexity 1 63 0 194 305 32 84 chr9 55403276 55403430 -62459197 - L2 LINE L2 -289 2983 2838 5490 223 45 27 chr9 55403520 55404877 -62457750 + L1MB7 LINE L1 209 1589 -5157 6213 222 45 13 chr9 55404884 55406184 -62456443 + L1M4 LINE L1 7 1348 -5501 5083 158 44 3 chr9 55406189 55407150 -62455477 + L1M4 LINE L1 1704 2703 -4146 2016 228 178 14 chr9 55407140 55407942 -62454685 + L1MB7 LINE L1 1740 2673 -4177 * 3894 233 49 29 chr9 55407942 55409175 -62453452 + L1MB7 LINE L1 4778 6034 -814 1725 183 0 22 chr9 55409175 55409492 -62453135 + AluJb SINE Alu 1 310 -2 607 141 0 10 chr9 55409522 55409621 -62453006 + MER4A LTR ERV1 1 98 -566 1769 127 5 80 chr9 55409621 55409992 -62452635 + MER4A LTR ERV1 263 664 0 3130 182 66 11 chr9 55409992 55410640 -62451987 + L1MB7 LINE L1 6051 6734 -152 402 86 86 0 chr9 55410640 55410698 -62451929 - MSTB2 LTR MaLR -394 63 1 297 268 0 12 chr9 55411315 55411397 -62451230 + (TA)n Simple_repeat Simple_repeat 2 82 0 2170 125 0 10 chr9 55412415 55412726 -62449901 + AluSx SINE Alu 1 308 -4 406 325 71 29 chr9 55414110 55414350 -62448277 + MLT1I LTR MaLR 4 253 -156 892 287 84 46 chr9 55414585 55415038 -62447589 - Charlie8 DNA MER1_type -1914 503 34 2353 90 0 0 chr9 55415168 55415456 -62447171 - AluSc SINE Alu -14 295 8 333 214 6 60 chr9 55415622 55415790 -62446837 + A-rich Low_complexity Low_complexity 3 161 0 2216 183 68 60 chr9 55415793 55416270 -62446357 - MLT2B1 LTR ERVL -2 518 35 2245 152 82 20 chr9 55416270 55416671 -62445956 + MSTA LTR MaLR 1 426 -2 2216 183 68 60 chr9 55416671 55416707 -62445920 - MLT2B1 LTR ERVL -485 35 1 2096 137 0 7 chr9 55417023 55417302 -62445325 + AluSx SINE Alu 1 279 -33 411 21 0 0 chr9 55417302 55417350 -62445277 + (CA)n Simple_repeat Simple_repeat 1 48 0 2096 137 0 7 chr9 55417350 55417376 -62445251 + AluSx SINE Alu 279 304 -8 222 271 13 73 chr9 55417456 55417569 -62445058 + MIR SINE MIR 36 144 -64 211 225 125 125 chr9 55417573 55417620 -62445007 + MER5A DNA MER1_type 30 76 -113 2308 89 3 0 chr9 55417620 55417912 -62444715 + AluY SINE Alu 1 293 -18 211 225 125 125 chr9 55417912 55417981 -62444646 + MER5A DNA MER1_type 76 149 -40 678 212 15 0 chr9 55417981 55418118 -62444509 - L1PA16 LINE L1 -6 6160 6022 211 225 125 125 chr9 55418118 55418160 -62444467 + MER5A DNA MER1_type 148 189 0 1572 203 68 73 chr9 55418330 55418798 -62443829 - MER31B LTR ERV1 0 466 1 253 257 43 29 chr9 55419514 55419584 -62443043 + L2 LINE L2 3168 3238 -34 463 297 75 38 chr9 55419589 55419801 -62442826 + MIR SINE MIR 26 245 -17 767 241 87 37 chr9 55419806 55419973 -62442654 + MIR SINE MIR 8 192 -70 857 221 0 13 chr9 55419973 55420127 -62442500 + FRAM SINE Alu 1 152 -14 767 241 87 37 chr9 55420127 55420200 -62442427 + MIR SINE MIR 192 260 -2 245 234 65 13 chr9 55421449 55421526 -62441101 - MIR3 SINE MIR -11 197 117 417 20 0 0 chr9 55421922 55421972 -62440655 + (TG)n Simple_repeat Simple_repeat 2 51 0 820 279 26 17 chr9 55422481 55422714 -62439913 - MIR SINE MIR -17 245 11 2068 144 0 3 chr9 55422789 55423088 -62439539 - AluSx SINE Alu -14 298 1 492 238 60 30 chr9 55423519 55423687 -62438940 + Charlie8 DNA MER1_type 75 247 -2170 618 189 0 0 chr9 55424471 55424566 -62438061 - FLAM_A SINE Alu -47 95 1 267 327 90 24 chr9 55424663 55424874 -62437753 + MIR SINE MIR 32 256 -6 2073 114 9 22 chr9 55426288 55426605 -62436022 + AluSq SINE Alu 1 313 0 180 77 0 0 chr9 55426785 55426811 -62435816 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 588 277 58 66 chr9 55427299 55427678 -62434949 + L2 LINE L2 2934 3309 -4 1099 139 6 6 chr9 55428425 55428591 -62434036 - MLT1C LTR MaLR 0 467 302 1802 167 101 27 chr9 55428596 55428635 -62433992 - MSTB LTR MaLR -34 392 357 2325 62 0 17 chr9 55428635 55428926 -62433701 + AluY SINE Alu 23 308 -3 1802 167 101 27 chr9 55428926 55429251 -62433376 - MSTB LTR MaLR -69 357 1 1624 179 19 6 chr9 55429251 55429558 -62433069 - MLT1C LTR MaLR -156 311 1 182 152 0 0 chr9 55429986 55430019 -62432608 - L2 LINE L2 -4 3268 3236 2124 126 10 3 chr9 55430539 55430833 -62431794 + AluSx SINE Alu 1 296 -16 186 200 0 0 chr9 55431912 55431946 -62430681 + (TA)n Simple_repeat Simple_repeat 1 37 -28 2184 105 3 0 chr9 55431946 55432232 -62430395 - AluSx SINE Alu -25 287 1 186 200 0 0 chr9 55432232 55432262 -62430365 + (TA)n Simple_repeat Simple_repeat 36 65 0 200 309 59 0 chr9 55434974 55435042 -62427585 + L2 LINE L2 3242 3313 0 180 139 0 28 chr9 55435849 55435885 -62426742 - MIR SINE MIR -153 109 75 209 244 22 0 chr9 55436659 55436704 -62425923 - L2 LINE L2 -91 3181 3136 289 282 162 21 chr9 55436754 55436995 -62425632 - MLT1J LTR MaLR -4 507 233 534 252 79 87 chr9 55437153 55437479 -62425148 + LTR33 LTR ERVL 27 413 -108 2457 67 0 3 chr9 55437479 55437779 -62424848 - AluY SINE Alu -6 305 7 534 252 79 87 chr9 55437779 55437886 -62424741 + LTR33 LTR ERVL 413 519 -2 236 239 56 112 chr9 55437980 55438177 -62424450 - L2 LINE L2 -218 3054 2869 381 43 0 0 chr9 55438263 55438310 -62424317 + (TG)n Simple_repeat Simple_repeat 2 48 0 2155 121 0 0 chr9 55438313 55438595 -62424032 - AluSx SINE Alu -30 282 1 371 324 27 9 chr9 55438904 55439015 -62423612 + L2 LINE L2 3160 3272 0 482 109 0 40 chr9 55439139 55439240 -62423387 + (GGGA)n Simple_repeat Simple_repeat 3 99 0 549 267 148 14 chr9 55439960 55440170 -62422457 - MIR SINE MIR -9 253 16 2160 114 21 30 chr9 55442122 55442456 -62420171 - L1MA1 LINE L1 0 6302 5972 23 0 0 0 chr9 55443197 55443220 -62419407 + AT_rich Low_complexity Low_complexity 1 23 0 262 190 0 86 chr9 55443916 55443945 -62418682 + L2 LINE L2 3212 3235 -37 4559 93 40 24 chr9 55443945 55444569 -62418058 + MER51A LTR ERV1 1 634 0 262 190 0 86 chr9 55444569 55444597 -62418030 + L2 LINE L2 3235 3264 -8 575 241 15 8 chr9 55444716 55444849 -62417778 + MIR SINE MIR 83 216 -46 471 293 32 0 chr9 55446793 55446916 -62415711 + MER94 DNA DNA 1 127 -7 24 53 0 0 chr9 55447141 55447179 -62415448 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr9 55448598 55448620 -62414007 + AT_rich Low_complexity Low_complexity 1 22 0 254 280 27 0 chr9 55448849 55448924 -62413703 + CT-rich Low_complexity Low_complexity 3 79 0 195 256 0 0 chr9 55449504 55449543 -62413084 - MIR SINE MIR -168 94 56 707 310 10 65 chr9 55449859 55450243 -62412384 - MLT1I LTR MaLR -7 402 40 703 216 148 0 chr9 55450383 55450559 -62412068 - MER3 DNA MER1_type -1 208 7 1214 224 9 5 chr9 55450572 55450795 -62411832 - MER58A DNA MER1_type 0 224 1 353 290 113 82 chr9 55450834 55451162 -62411465 + Charlie7 DNA MER1_type 41 378 -2234 298 304 71 18 chr9 55451223 55451335 -62411292 + LTR50 LTR ERVL 51 168 -627 683 241 173 18 chr9 55451445 55451786 -62410841 + LTR50 LTR ERVL 402 795 0 842 241 35 0 chr9 55451911 55452139 -62410488 + Charlie7 DNA MER1_type 622 857 -1755 3462 241 45 17 chr9 55452278 55453258 -62409369 + Charlie7 DNA MER1_type 873 1879 -733 1093 238 84 15 chr9 55453329 55453733 -62408894 + Charlie7 DNA MER1_type 1996 2427 -185 331 277 55 30 chr9 55453761 55453996 -62408631 + L1ME3A LINE L1 2023 2263 -4133 246 81 0 0 chr9 55454197 55454234 -62408393 + (TC)n Simple_repeat Simple_repeat 2 38 0 1455 274 147 9 chr9 55454250 55455099 -62407528 + L1ME3A LINE L1 2586 3551 -2664 * 2297 261 81 38 chr9 55455080 55456721 -62405906 + L1ME3A LINE L1 4531 6236 -3 1185 186 75 45 chr9 55457024 55457370 -62405257 + MSTD LTR MaLR 1 396 0 189 107 0 0 chr9 55458706 55458734 -62403893 + (GA)n Simple_repeat Simple_repeat 2 29 0 3703 222 32 38 chr9 55458832 55459765 -62402862 - MER63C DNA MER1_type -1 929 2 396 220 73 37 chr9 55459912 55460021 -62402606 - MER103 DNA DNA -46 120 8 468 302 217 42 chr9 55460802 55461494 -62401133 - L3 LINE CR1 -127 1450 638 967 295 77 28 chr9 55462199 55462741 -62399886 + L2 LINE L2 2708 3313 0 3199 218 85 57 chr9 55463136 55464121 -62398506 + MSTD-int LTR MaLR 634 1735 0 1128 175 83 29 chr9 55464121 55464452 -62398175 + MSTD LTR MaLR 1 396 0 1289 334 115 40 chr9 55464452 55465700 -62396927 + L2 LINE L2 1367 2708 -606 462 233 8 62 chr9 55467311 55467440 -62395187 - MIR3 SINE MIR -2 206 85 621 280 235 20 chr9 55467860 55468495 -62394132 + L2 LINE L2 2531 3313 0 218 286 16 16 chr9 55469493 55469556 -62393071 - MIR SINE MIR -5 257 195 183 306 82 0 chr9 55471211 55471296 -62391331 - L2 LINE L2 -217 3096 3005 251 245 61 20 chr9 55471829 55471927 -62390700 + L1ME4a LINE L1 5561 5662 -459 321 250 111 69 chr9 55471940 55472300 -62390327 + L1ME4a LINE L1 5746 6120 -1 2255 122 0 0 chr9 55472326 55472637 -62389990 + AluSx SINE Alu 1 311 -1 445 268 10 0 chr9 55472748 55472845 -62389782 - MER5A DNA MER1_type -88 101 4 2437 220 58 26 chr9 55473939 55474735 -62387892 + MER69 DNA AcHobo 1705 2525 -1 999 177 0 30 chr9 55475682 55475885 -62386742 + AluJo SINE Alu 115 311 -1 434 302 65 0 chr9 55475967 55476106 -62386521 + MIR SINE MIR 23 170 -92 1870 129 65 9 chr9 55479050 55479375 -62383252 - MER61A LTR ERV1 0 343 1 427 283 7 1 chr9 55480922 55481049 -62381578 - MLT1I LTR MaLR -258 151 20 211 344 122 0 chr9 55481078 55481168 -62381459 - L2 LINE L2 -292 3021 2921 432 246 31 31 chr9 55481420 55481550 -62381077 + MIR SINE MIR 46 175 -87 356 327 49 12 chr9 55481692 55481854 -62380773 - L3 LINE CR1 -3 1574 1407 256 291 12 0 chr9 55481956 55482042 -62380585 + MER103 DNA DNA 34 120 -46 1650 125 55 18 chr9 55482206 55482478 -62380149 - AluSx SINE Alu -1 311 30 425 292 38 43 chr9 55483263 55483448 -62379179 + MIR3 SINE MIR 3 186 -22 239 331 89 52 chr9 55484664 55484912 -62377715 + MLT1L LTR MaLR 3 259 -356 375 23 0 0 chr9 55485733 55485777 -62376850 + (TG)n Simple_repeat Simple_repeat 2 45 0 619 49 32 73 chr9 55485777 55486159 -62376468 + (TA)n Simple_repeat Simple_repeat 1 366 0 555 61 44 56 chr9 55486172 55486352 -62376275 + (TA)n Simple_repeat Simple_repeat 2 179 0 207 183 61 12 chr9 55486416 55486498 -62376129 + (TA)n Simple_repeat Simple_repeat 2 87 0 700 330 94 81 chr9 55486592 55487167 -62375460 - L2 LINE L2 0 3272 2706 820 248 9 35 chr9 55487167 55487397 -62375230 - MER58A DNA MER1_type 0 224 1 700 330 94 81 chr9 55487397 55488676 -62373951 - L2 LINE L2 -566 2706 1362 3105 155 48 8 chr9 55489064 55489568 -62373059 - MER1A DNA MER1_type -3 524 1 403 312 50 65 chr9 55489713 55490109 -62372518 - L1M4 LINE L1 -1978 4168 3787 2034 226 88 10 chr9 55490109 55490630 -62371997 + REP3 LTR ERV 1 562 0 403 312 50 65 chr9 55490630 55490973 -62371654 - L1M4 LINE L1 -2359 3787 3440 1667 152 3 87 chr9 55491172 55491495 -62371132 - AluJb SINE Alu -16 296 1 230 265 29 0 chr9 55492282 55492350 -62370277 + MLT1L LTR MaLR 544 613 -2 687 236 112 33 chr9 55492677 55492766 -62369861 - MIR SINE MIR 0 262 181 1483 180 24 20 chr9 55492766 55493060 -62369567 + AluJo SINE Alu 1 295 -17 687 236 112 33 chr9 55493060 55493212 -62369415 - MIR SINE MIR -81 181 2 954 242 32 32 chr9 55494035 55494108 -62368519 + MER58 DNA MER1_type 1 73 -2347 2732 152 43 28 chr9 55494108 55494689 -62367938 - L1MB5 LINE L1 0 6174 5585 954 242 32 32 chr9 55494689 55494900 -62367727 + MER58 DNA MER1_type 72 285 -2135 * 1978 218 94 27 chr9 55494869 55495005 -62367622 + MER97a DNA MER1_type? 60 185 -709 2369 83 0 10 chr9 55495005 55495306 -62367321 - AluY SINE Alu -13 298 1 1978 218 94 27 chr9 55495306 55495872 -62366755 + MER97a DNA MER1_type? 185 809 -85 335 292 8 15 chr9 55495905 55496035 -62366592 - L1MC4 LINE L1 -150 7892 7764 1473 164 68 11 chr9 55496193 55496456 -62366171 + AluJo SINE Alu 23 300 -12 2507 77 0 0 chr9 55496545 55496856 -62365771 - AluY SINE Alu 0 311 1 458 221 83 51 chr9 55496895 55497148 -62365479 - L1MC5 LINE L1 -227 7734 7474 225 0 0 0 chr9 55497148 55497173 -62365454 + (T)n Simple_repeat Simple_repeat 1 25 0 372 257 26 18 chr9 55497214 55497327 -62365300 + MER94 DNA DNA 21 134 0 28 0 0 0 chr9 55498075 55498103 -62364524 + AT_rich Low_complexity Low_complexity 1 28 0 1750 223 75 20 chr9 55498401 55498908 -62363719 + MER90 LTR ERV1 80 614 0 381 229 164 0 chr9 55500010 55500132 -62362495 - L1MC4a LINE L1 -987 6821 6680 31 0 0 0 chr9 55500217 55500248 -62362379 + AT_rich Low_complexity Low_complexity 1 31 0 1020 163 12 37 chr9 55500664 55500909 -62361718 - L1MB8 LINE L1 -5 6173 5935 2105 166 21 2 chr9 55501009 55501430 -62361197 - L1MB8 LINE L1 -205 5973 5545 229 326 21 57 chr9 55501887 55502028 -62360599 + MIR3 SINE MIR 2 137 -71 275 302 84 28 chr9 55503195 55503374 -62359253 + MIR SINE MIR 41 229 -33 2128 105 7 7 chr9 55503968 55504262 -62358365 - AluSg1 SINE Alu -15 294 1 2109 153 39 63 chr9 55504460 55504923 -62357704 + LTR47A LTR ERVL 1 452 0 1189 278 94 31 chr9 55505129 55505554 -62357073 - MER115 DNA AcHobo 0 693 242 384 293 45 25 chr9 55505703 55505901 -62356726 - MER115 DNA AcHobo -491 202 1 186 133 0 0 chr9 55508428 55508458 -62354169 + (T)n Simple_repeat Simple_repeat 1 30 0 216 97 0 0 chr9 55508708 55508739 -62353888 + (CA)n Simple_repeat Simple_repeat 1 31 0 1450 251 88 33 chr9 55509905 55510419 -62352208 - MLT1H LTR MaLR -3 546 5 228 100 0 0 chr9 55510635 55510675 -62351952 + (C)n Simple_repeat Simple_repeat 1 40 0 1229 264 89 9 chr9 55510866 55511294 -62351333 + MLT1H LTR MaLR 85 546 -3 507 257 92 107 chr9 55511364 55511419 -62351208 + MLT1G LTR MaLR 10 64 -531 2210 132 3 0 chr9 55511419 55511729 -62350898 + AluSx SINE Alu 1 311 -1 507 257 92 107 chr9 55511729 55512153 -62350474 + MLT1G LTR MaLR 64 519 -76 1370 216 63 14 chr9 55512160 55512508 -62350119 - MLT1A2 LTR MaLR -7 367 3 231 175 63 16 chr9 55512510 55512573 -62350054 + MLT1G LTR MaLR 515 580 -15 537 296 89 72 chr9 55512618 55512730 -62349897 - L1ME3A LINE L1 -229 5941 5832 2161 122 0 0 chr9 55512730 55513024 -62349603 - AluSx SINE Alu -18 294 1 537 296 89 72 chr9 55513024 55513699 -62348928 - L1ME3A LINE L1 -338 5832 5139 197 143 48 0 chr9 55513704 55513746 -62348881 + (CATATA)n Simple_repeat Simple_repeat 3 46 0 266 289 0 0 chr9 55513747 55513837 -62348790 + L1MC4 LINE L1 6614 6703 -1339 198 318 32 0 chr9 55515278 55515341 -62347286 + MIR SINE MIR 29 93 -115 180 293 171 32 chr9 55515402 55515525 -62347102 + L2 LINE L2 3161 3300 -13 3081 151 57 17 chr9 55516814 55517415 -62345212 - MER51A LTR ERV1 -9 625 1 182 211 42 99 chr9 55518229 55518300 -62344327 + L2 LINE L2 3205 3271 -1 958 305 31 25 chr9 55518797 55519232 -62343395 - LTR16A LTR ERVL 0 457 15 1591 201 5 65 chr9 55519803 55520201 -62342426 - MLT1A2 LTR MaLR 0 374 1 527 279 62 12 chr9 55520964 55521208 -62341419 - L1ME LINE L1 -338 5783 5528 256 231 90 0 chr9 55521233 55521311 -62341316 - L1ME LINE L1 -652 5469 5385 2144 86 3 21 chr9 55521612 55521902 -62340725 + AluY SINE Alu 1 285 -26 30 0 0 0 chr9 55521902 55521932 -62340695 + AT_rich Low_complexity Low_complexity 1 30 0 2131 140 0 0 chr9 55522575 55522868 -62339759 - AluSx SINE Alu -15 297 5 315 0 0 0 chr9 55523057 55523092 -62339535 + (CA)n Simple_repeat Simple_repeat 2 36 0 402 267 167 13 chr9 55523129 55523279 -62339348 + MIR SINE MIR 2 174 -88 214 297 141 0 chr9 55524605 55524669 -62337958 + MIR SINE MIR 22 94 -114 727 290 44 61 chr9 55524786 55525196 -62337431 - MLT1I LTR MaLR 0 409 7 474 263 68 40 chr9 55526009 55526305 -62336322 + MLT1J LTR MaLR 111 478 -33 1327 219 0 0 chr9 55526379 55526617 -62336010 - AluJo SINE Alu -74 238 1 2004 129 0 18 chr9 55528525 55528861 -62333766 + AluSx SINE Alu 1 331 0 351 287 72 43 chr9 55528937 55529146 -62333481 - MER102a DNA MER1_type -13 317 103 354 217 17 0 chr9 55529939 55529999 -62332628 + MIR SINE MIR 20 80 -182 255 331 50 8 chr9 55530116 55530237 -62332390 - MIR SINE MIR -30 232 107 830 272 13 0 chr9 55530443 55530678 -62331949 - MER115 DNA AcHobo 0 693 456 345 370 106 0 chr9 55530818 55531007 -62331620 - MER115 DNA AcHobo -484 209 1 419 0 20 0 chr9 55531390 55531441 -62331186 + (TA)n Simple_repeat Simple_repeat 2 53 0 307 302 223 0 chr9 55532609 55532748 -62329879 - MER5A DNA MER1_type -2 187 18 741 335 8 4 chr9 55533732 55533968 -62328659 + MIR SINE MIR 5 241 -21 8194 138 10 3 chr9 55538343 55540808 -62321819 - L1MA3 LINE L1 0 7724 5242 7707 174 5 93 chr9 55540807 55542600 -62320027 - L1MA3 LINE L1 -5920 1645 11 * 1801 243 127 8 chr9 55543552 55544071 -62318556 - MLT1G LTR MaLR 0 590 10 4780 218 47 24 chr9 55544291 55546609 -62316018 - L1MDa LINE L1 -2866 3674 1274 1142 177 0 0 chr9 55546617 55546820 -62315807 + MER2 DNA MER2_type 7 209 -136 2392 247 50 35 chr9 55546930 55548069 -62314558 - L1MDa LINE L1 -5280 1260 24 2496 57 0 3 chr9 55549076 55549376 -62313251 - AluY SINE Alu -12 299 1 547 158 45 38 chr9 55549701 55549834 -62312793 - MER94 DNA DNA 0 134 1 1342 254 64 11 chr9 55550137 55550383 -62312244 - Charlie4a DNA MER1_type -1459 502 271 183 42 0 0 chr9 55550383 55550407 -62312220 + (CATAA)n Simple_repeat Simple_repeat 2 25 0 1342 254 64 11 chr9 55550407 55550612 -62312015 - Charlie4a DNA MER1_type -1690 271 27 302 308 109 19 chr9 55555126 55555282 -62307345 - L2 LINE L2 -183 3089 2920 210 360 80 0 chr9 55555388 55555488 -62307139 + L2 LINE L2 3165 3272 0 21 0 0 0 chr9 55556001 55556022 -62306605 + AT_rich Low_complexity Low_complexity 1 21 0 728 283 38 5 chr9 55556217 55556429 -62306198 - MIR SINE MIR -24 238 20 860 224 5 43 chr9 55556803 55557013 -62305614 + MIR SINE MIR 12 213 -49 345 193 0 34 chr9 55557625 55557713 -62304914 - MER97b DNA MER1_type? -877 176 92 895 245 37 12 chr9 55557758 55558046 -62304581 - L1ME3 LINE L1 -27 6135 5838 23 78 0 0 chr9 55558087 55558138 -62304489 + AT_rich Low_complexity Low_complexity 1 51 0 454 233 115 72 chr9 55558193 55558502 -62304125 - L1ME3A LINE L1 -235 5935 5592 2304 109 0 0 chr9 55558502 55558804 -62303823 - AluSx SINE Alu -10 302 1 454 233 115 72 chr9 55558804 55558838 -62303789 - L1ME3A LINE L1 -578 5592 5561 29 0 0 0 chr9 55558855 55558884 -62303743 + AT_rich Low_complexity Low_complexity 1 29 0 351 291 65 60 chr9 55558893 55559072 -62303555 - MIR3 SINE MIR -59 149 5 406 217 304 7 chr9 55559415 55559553 -62303074 + MER5A DNA MER1_type 11 189 0 351 304 48 0 chr9 55559601 55559726 -62302901 + MIR SINE MIR 91 221 -41 5371 18 0 0 chr9 55559770 55560383 -62302244 + L1PA2 LINE L1 5535 6147 -8 23 0 0 0 chr9 55560392 55560415 -62302212 + AT_rich Low_complexity Low_complexity 1 23 0 691 120 0 0 chr9 55562574 55562682 -62299945 + AluSg/x SINE Alu 201 308 -2 261 0 0 0 chr9 55562682 55562711 -62299916 + (TA)n Simple_repeat Simple_repeat 2 30 0 389 337 124 32 chr9 55562728 55563066 -62299561 - L3 LINE CR1 -1 1576 1208 453 287 61 6 chr9 55563210 55563391 -62299236 - MIR SINE MIR -6 256 66 204 245 75 0 chr9 55564872 55564925 -62297702 + L2 LINE L2 3201 3257 -15 616 352 4 4 chr9 55565179 55565409 -62297218 - MIR SINE MIR -10 252 23 929 275 41 60 chr9 55565409 55565875 -62296752 - LTR16A1 LTR ERVL 0 457 1 474 325 26 16 chr9 55565919 55566110 -62296517 + MIR SINE MIR 20 212 -50 237 361 59 25 chr9 55566384 55566503 -62296124 - MIR SINE MIR -136 126 4 274 294 147 11 chr9 55567299 55567476 -62295151 + MIR SINE MIR 6 206 -56 2043 94 0 0 chr9 55567874 55568139 -62294488 + AluSg SINE Alu 1 265 -45 2169 175 16 46 chr9 55568979 55569175 -62293452 + MSTB LTR MaLR 1 201 -225 2010 131 0 3 chr9 55569175 55569466 -62293161 + AluSx SINE Alu 1 290 -22 207 0 0 0 chr9 55569475 55569498 -62293129 + (TAAA)n Simple_repeat Simple_repeat 4 26 0 2169 175 16 46 chr9 55569498 55569726 -62292901 + MSTB LTR MaLR 209 422 -4 26092 33 3 1 chr9 55570060 55574180 -62288447 + L1PA2 LINE L1 2031 6153 -2 21 71 0 0 chr9 55574332 55574374 -62288253 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chr9 55574476 55574504 -62288123 + AT_rich Low_complexity Low_complexity 1 28 0 885 191 19 5 chr9 55574718 55574927 -62287700 + L1MA4 LINE L1 6088 6299 -1 370 227 10 21 chr9 55576575 55576672 -62285955 - L1ME3A LINE L1 -30 6140 6045 832 293 60 23 chr9 55576705 55577221 -62285406 - L1ME3A LINE L1 -188 5982 5448 216 0 0 0 chr9 55579046 55579070 -62283557 + (A)n Simple_repeat Simple_repeat 1 24 0 252 0 0 0 chr9 55579073 55579101 -62283526 + (T)n Simple_repeat Simple_repeat 1 28 0 221 314 8 127 chr9 55579679 55579741 -62282886 - L2 LINE L2 -42 3230 3187 2311 97 3 0 chr9 55579741 55580049 -62282578 - AluSc SINE Alu 0 309 1 221 314 8 127 chr9 55580049 55580104 -62282523 - L2 LINE L2 -85 3187 3127 26 0 0 0 chr9 55580190 55580216 -62282411 + AT_rich Low_complexity Low_complexity 1 26 0 1943 145 66 3 chr9 55580818 55581183 -62281444 - MLT1B LTR MaLR 0 390 3 1191 131 18 61 chr9 55582146 55582375 -62280252 + MER20 DNA MER1_type 1 219 0 1233 199 18 4 chr9 55582662 55582888 -62279739 - AluJo SINE Alu -83 229 1 2433 212 19 76 chr9 55583282 55584080 -62278547 + L1MB7 LINE L1 5433 6184 0 342 120 0 0 chr9 55584388 55584438 -62278189 - 5S rRNA rRNA -71 50 1 2293 111 0 0 chr9 55584795 55585092 -62277535 - AluSq SINE Alu -16 297 1 387 0 0 0 chr9 55585566 55585609 -62277018 + (TG)n Simple_repeat Simple_repeat 1 43 0 189 0 0 0 chr9 55585611 55585632 -62276995 + (GA)n Simple_repeat Simple_repeat 2 22 0 186 301 178 0 chr9 55585660 55585733 -62276894 + MIR SINE MIR 18 103 -159 929 277 28 54 chr9 55586047 55586359 -62276268 + MLT1H1 LTR MaLR 183 486 -69 2484 55 0 19 chr9 55586359 55586666 -62275961 - AluY SINE Alu -10 301 1 929 277 28 54 chr9 55586666 55586707 -62275920 + MLT1H1 LTR MaLR 486 527 -28 189 121 0 0 chr9 55586801 55586834 -62275793 + (TAA)n Simple_repeat Simple_repeat 1 33 0 421 275 202 0 chr9 55586991 55587169 -62275458 - MIR SINE MIR -13 249 36 387 258 44 57 chr9 55588524 55588683 -62273944 + MIR SINE MIR 98 254 -8 435 314 101 19 chr9 55590165 55590372 -62272255 + MIR SINE MIR 20 243 -19 285 231 24 7 chr9 55590541 55590634 -62271993 + MIR SINE MIR 48 142 -66 2317 116 0 0 chr9 55590735 55591045 -62271582 + AluSg SINE Alu 1 310 0 494 342 45 17 chr9 55592065 55592422 -62270205 + L1ME1 LINE L1 5488 5854 -312 424 272 130 31 chr9 55592824 55593078 -62269549 - MLT1K LTR MaLR 0 588 310 208 330 88 0 chr9 55593466 55593557 -62269070 + L3 LINE CR1 1172 1270 -307 323 308 58 64 chr9 55596411 55596567 -62266060 + MIR3 SINE MIR 6 160 -48 1031 207 59 3 chr9 55596756 55597060 -62265567 - L1M4 LINE L1 -3149 2997 2677 199 393 0 0 chr9 55597700 55597784 -62264843 + MIR SINE MIR 66 149 -113 203 262 0 0 chr9 55598235 55598277 -62264350 + polypyrimidine Low_complexity Low_complexity 1 42 0 202 275 163 0 chr9 55598363 55598443 -62264184 - L2 LINE L2 0 3313 3221 574 267 74 14 chr9 55598468 55598685 -62263942 - L2 LINE L2 -420 2894 2665 543 335 47 27 chr9 55598710 55599011 -62263616 + MLT1I LTR MaLR 58 364 -45 255 177 177 0 chr9 55599980 55600042 -62262585 + MIR SINE MIR 162 234 -28 314 235 0 10 chr9 55600070 55600168 -62262459 + CT-rich Low_complexity Low_complexity 3 99 0 1053 102 63 10 chr9 55600183 55600388 -62262239 - L1MA8 LINE L1 -7 6284 6069 295 213 27 53 chr9 55600575 55600650 -62261977 - MER5B DNA MER1_type -1 177 105 226 204 0 20 chr9 55601386 55601435 -62261192 - L2 LINE L2 -8 3264 3217 230 267 67 0 chr9 55602167 55602227 -62260400 - MER91C DNA MER1_type -30 110 47 308 307 23 0 chr9 55602536 55602624 -62260003 - L1MC4 LINE L1 -1339 6703 6614 358 235 20 10 chr9 55603786 55603888 -62258739 + MLT1J2 LTR MaLR 65 167 -283 1092 185 45 49 chr9 55604425 55604711 -62257916 + MLT1D LTR MaLR 221 505 0 412 243 53 86 chr9 55604732 55604975 -62257652 - L1ME1 LINE L1 -151 6015 5781 225 0 0 0 chr9 55605046 55605071 -62257556 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 846 266 25 0 chr9 55605100 55605341 -62257286 - L1ME1 LINE L1 -396 5770 5524 281 300 23 0 chr9 55605847 55605977 -62256650 + L1ME LINE L1 5692 5824 -297 220 309 24 12 chr9 55606226 55606310 -62256317 + L2 LINE L2 2183 2267 -1047 1177 226 41 53 chr9 55606554 55606970 -62255657 - MER63B DNA MER1_type -4 432 22 2368 100 0 0 chr9 55607129 55607439 -62255188 + AluSg SINE Alu 1 310 0 620 237 23 17 chr9 55607444 55607617 -62255010 + LTR33A LTR ERVL 350 523 0 1473 212 10 14 chr9 55608088 55608385 -62254242 + AluJo SINE Alu 2 297 -15 21 36 0 0 chr9 55609598 55609626 -62253001 + AT_rich Low_complexity Low_complexity 1 28 0 3954 126 38 13 chr9 55610218 55610907 -62251720 + L1MA4 LINE L1 5590 6295 -5 193 355 26 0 chr9 55611052 55611128 -62251499 - L2 LINE L2 -9 3304 3227 441 265 218 7 chr9 55611275 55611422 -62251205 - MER5A DNA MER1_type 0 189 12 195 42 0 0 chr9 55611740 55611764 -62250863 + (GAA)n Simple_repeat Simple_repeat 2 25 0 1445 148 0 21 chr9 55613602 55613845 -62248782 + L1MC1 LINE L1 6096 6333 0 2033 170 36 81 chr9 55614368 55614825 -62247802 + MLT1D LTR MaLR 1 432 -73 2239 116 40 8 chr9 55614825 55615178 -62247449 + THE1B LTR MaLR 1 364 0 2033 170 36 81 chr9 55615178 55615249 -62247378 + MLT1D LTR MaLR 432 505 0 212 271 135 10 chr9 55615602 55615698 -62246929 - L3 LINE CR1 -9 1568 1461 378 355 42 0 chr9 55617307 55617493 -62245134 - MIR SINE MIR -8 254 62 1554 152 36 60 chr9 55618367 55618669 -62243958 + AluSx SINE Alu 1 295 -17 421 253 56 12 chr9 55619249 55619411 -62243216 - MLT1L LTR MaLR 0 615 447 484 291 76 10 chr9 55619508 55619797 -62242830 - MLT1L LTR MaLR -299 316 9 848 150 58 77 chr9 55619867 55620074 -62242553 + MER20 DNA MER1_type 17 219 0 277 231 0 15 chr9 55621214 55621279 -62241348 + MLT1I LTR MaLR 346 409 0 238 314 20 78 chr9 55621332 55621434 -62241193 + MIR SINE MIR 6 101 -161 254 306 24 0 chr9 55622949 55623034 -62239593 - MIR3 SINE MIR -6 202 116 619 350 93 0 chr9 55623048 55623359 -62239268 + L3 LINE CR1 940 1279 -298 634 332 57 4 chr9 55623509 55623774 -62238853 + L3 LINE CR1 1298 1576 -1 345 319 145 7 chr9 55624324 55624462 -62238165 - MIR SINE MIR -104 158 2 1111 251 168 36 chr9 55624551 55625082 -62237545 + MLT2F LTR ERVL 3 603 -60 1960 110 62 52 chr9 55625254 55625562 -62237065 - AluSq SINE Alu -2 311 1 670 233 32 48 chr9 55625737 55625926 -62236701 + MIR SINE MIR 36 221 -41 180 0 0 0 chr9 55626115 55626135 -62236492 + (TC)n Simple_repeat Simple_repeat 2 21 0 1917 115 54 0 chr9 55626135 55626413 -62236214 - AluSx SINE Alu -19 293 1 302 153 17 0 chr9 55626935 55626994 -62235633 + T-rich Low_complexity Low_complexity 4 63 0 2110 96 0 4 chr9 55628246 55628526 -62234101 + AluY SINE Alu 3 281 -30 342 0 0 0 chr9 55628526 55628564 -62234063 + (CA)n Simple_repeat Simple_repeat 1 38 0 522 194 43 7 chr9 55628689 55628828 -62233799 + MER53 DNA DNA 4 147 -42 38 75 0 0 chr9 55628837 55628917 -62233710 + AT_rich Low_complexity Low_complexity 1 80 0 247 139 0 0 chr9 55628922 55628965 -62233662 + MER53 DNA DNA 144 186 -3 230 316 113 50 chr9 55629696 55629978 -62232649 - L2 LINE L2 -1 3312 3013 276 296 92 65 chr9 55630144 55630192 -62232435 - L2 LINE L2 -493 2821 2776 2221 109 0 0 chr9 55630192 55630506 -62232121 - AluSx SINE Alu 0 314 1 276 296 92 65 chr9 55630506 55630787 -62231840 - L2 LINE L2 -538 2776 2473 1721 201 3 0 chr9 55630787 55631085 -62231542 - AluJb SINE Alu -13 299 1 276 296 92 65 chr9 55631085 55631185 -62231442 - L2 LINE L2 -841 2473 2377 229 250 0 15 chr9 55631460 55631528 -62231099 - MLT1L LTR MaLR 0 615 549 24 0 0 0 chr9 55631533 55631557 -62231070 + AT_rich Low_complexity Low_complexity 1 24 0 2221 113 0 16 chr9 55631924 55632235 -62230392 - AluSg SINE Alu -4 306 1 227 296 107 19 chr9 55633831 55633990 -62228637 + LTR50 LTR ERVL 22 194 -601 342 186 47 12 chr9 55634256 55634342 -62228285 + LTR33A LTR ERVL 421 509 -14 298 387 54 1 chr9 55634607 55634777 -62227850 + MIR SINE MIR 16 192 -66 215 266 16 97 chr9 55634983 55635107 -62227520 + MIR SINE MIR 74 187 -75 232 318 144 50 chr9 55635636 55635747 -62226880 + L2 LINE L2 2873 2972 -341 2337 105 0 3 chr9 55635747 55636051 -62226576 - AluSp SINE Alu -10 303 1 232 318 144 50 chr9 55636051 55636342 -62226285 + L2 LINE L2 2972 3313 0 389 235 98 0 chr9 55636674 55636776 -62225851 + MER58A DNA MER1_type 30 141 0 319 167 17 0 chr9 55636776 55636835 -62225792 + MER58A DNA MER1_type 165 224 0 344 305 59 43 chr9 55637272 55637468 -62225159 - MIR SINE MIR -22 240 37 411 311 122 8 chr9 55639796 55639977 -62222650 - MIR SINE MIR -12 250 51 423 280 84 63 chr9 55640064 55640303 -62222324 + L2 LINE L2 3059 3302 -11 946 306 116 38 chr9 55640464 55641075 -62221552 - L3 LINE CR1 -3 1574 916 224 322 56 35 chr9 55641092 55641235 -62221392 - L2 LINE L2 0 3313 3168 2211 111 0 7 chr9 55641881 55642210 -62220417 + AluSx SINE Alu 1 312 0 724 355 64 8 chr9 55642590 55643049 -62219578 - L3 LINE CR1 -666 911 355 1544 190 67 24 chr9 55643354 55643728 -62218899 + MLT1B LTR MaLR 1 390 0 1782 208 84 60 chr9 55644379 55644984 -62217643 - MLT1E2 LTR MaLR -6 620 1 425 289 120 54 chr9 55645083 55645433 -62217194 - L2 LINE L2 -3 3310 2938 325 230 40 0 chr9 55645443 55645517 -62217110 - MIR SINE MIR -54 208 132 2238 171 36 7 chr9 55645556 55645881 -62216746 - Tigger2a DNA MER2_type -2275 433 92 189 0 0 0 chr9 55645881 55645902 -62216725 + (GGA)n Simple_repeat Simple_repeat 2 22 0 2238 171 36 7 chr9 55645902 55645997 -62216630 - Tigger2a DNA MER2_type -2616 92 1 258 271 57 96 chr9 55646453 55646630 -62215997 + L2 LINE L2 2921 3090 -182 232 91 13 208 chr9 55646634 55646671 -62215956 - MER5B DNA MER1_type -110 68 52 2036 120 3 30 chr9 55646671 55646972 -62215655 + AluSx SINE Alu 5 297 -15 232 91 13 208 chr9 55646972 55647011 -62215616 - MER5B DNA MER1_type -126 52 7 420 169 76 59 chr9 55647749 55647867 -62214760 + MLT1I LTR MaLR 281 400 -9 25 31 0 0 chr9 55649243 55649275 -62213352 + AT_rich Low_complexity Low_complexity 1 32 0 602 257 88 81 chr9 55649936 55650083 -62212544 - L1MC/D LINE L1 -2059 5749 5604 2209 116 10 0 chr9 55650083 55650385 -62212242 + AluSp SINE Alu 1 305 -8 602 257 88 81 chr9 55650385 55650716 -62211911 - L1MC/D LINE L1 -2204 5604 5268 408 319 52 28 chr9 55650799 55651047 -62211580 - L1MC/D LINE L1 -908 5238 4985 198 331 186 35 chr9 55651375 55651520 -62211107 - MER5B DNA MER1_type -8 170 4 479 46 0 0 chr9 55651743 55651808 -62210819 + AluSc SINE Alu 234 298 -11 180 261 67 75 chr9 55652171 55652305 -62210322 + L2 LINE L2 2837 2969 -345 642 265 92 74 chr9 55652726 55653118 -62209509 + L1MEd LINE L1 674 1072 -5047 275 280 10 10 chr9 55653311 55653411 -62209216 - MERVL LTR ERVL -369 5116 5017 308 284 49 6 chr9 55653660 55653822 -62208805 + L1MEd LINE L1 2160 2328 -3801 6761 58 14 5 chr9 55654115 55655721 -62206906 + L1PA7 LINE L1 4530 6143 -11 1673 256 140 45 chr9 55655739 55656860 -62205767 + HAL1 LINE L1 1182 2408 -99 382 343 116 11 chr9 55657051 55657378 -62205249 + L1 LINE L1 3982 4337 -1809 16684 27 2 0 chr9 55657378 55659470 -62203157 - L1PA3 LINE L1 -1417 4729 2634 7649 28 0 0 chr9 55659470 55660915 -62201712 + L1PA3 LINE L1 4708 6152 -3 920 193 55 20 chr9 55661019 55661221 -62201406 - MER6B DNA MER2_type -1 209 1 499 284 107 12 chr9 55661264 55661507 -62201120 + MER57A LTR ERV1 134 399 -4 1492 199 94 25 chr9 55661517 55661919 -62200708 + MLT1D LTR MaLR 76 505 0 5016 158 50 30 chr9 55662040 55664000 -62198627 - L1MA8 LINE L1 -5 6286 4292 31 0 0 0 chr9 55664297 55664328 -62198299 + AT_rich Low_complexity Low_complexity 1 31 0 4115 102 95 37 chr9 55664898 55665622 -62197005 - L1PA16 LINE L1 -9 6157 5392 * 7059 216 26 69 chr9 55665605 55667213 -62195414 - L1 LINE L1 -1406 4740 3275 2053 153 0 3 chr9 55667213 55667520 -62195107 - AluSx SINE Alu -6 306 1 7059 216 26 69 chr9 55667520 55668383 -62194244 - L1 LINE L1 -2871 3275 2376 209 255 0 0 chr9 55669687 55669734 -62192893 + L3b LINE CR1 1528 1574 -9 576 286 33 0 chr9 55669881 55670063 -62192564 + MIR SINE MIR 29 216 -46 839 273 36 51 chr9 55670371 55670704 -62191923 - MLT2F LTR ERVL -335 328 1 356 279 142 40 chr9 55670730 55670977 -62191650 + L2 LINE L2 3033 3304 -9 2151 130 16 0 chr9 55671036 55671343 -62191284 + AluSx SINE Alu 1 312 0 522 281 159 15 chr9 55671456 55671790 -62190837 - MLT1J2 LTR MaLR 0 450 69 476 258 159 18 chr9 55671888 55672051 -62190576 - MIR SINE MIR -74 188 3 371 358 116 9 chr9 55673264 55673496 -62189131 + MIR SINE MIR 4 260 -2 202 28 28 28 chr9 55675316 55675352 -62187275 + (TTTTTA)n Simple_repeat Simple_repeat 6 41 0 188 331 24 39 chr9 55676048 55676175 -62186452 - MIR SINE MIR -10 252 128 2890 89 36 25 chr9 55679018 55679457 -62183170 - MLT2A1 LTR ERVL 0 444 1 600 268 84 6 chr9 55679608 55679787 -62182840 + L2 LINE L2 2215 2407 -907 310 216 27 0 chr9 55679839 55679913 -62182714 - L2 LINE L2 -781 2533 2458 341 343 140 17 chr9 55683879 55684115 -62178512 + L2 LINE L2 3004 3268 -4 180 291 73 0 chr9 55684130 55684185 -62178442 - MIR SINE MIR -7 255 197 954 161 58 39 chr9 55684672 55684877 -62177750 + MER3 DNA MER1_type 1 209 0 228 238 0 32 chr9 55684971 55685034 -62177593 - MER103 DNA DNA -35 131 71 183 42 0 0 chr9 55687718 55687742 -62174885 + (TTA)n Simple_repeat Simple_repeat 1 24 0 302 313 165 0 chr9 55687900 55688076 -62174551 + MLT1K LTR MaLR 259 463 -125 297 237 11 32 chr9 55688249 55688342 -62174285 - L1MC4 LINE L1 0 8042 7841 241 172 31 0 chr9 55688416 55688480 -62174147 + (TATATG)n Simple_repeat Simple_repeat 6 71 0 388 252 141 69 chr9 55688543 55688805 -62173822 - L1MC4 LINE L1 -207 7835 7555 2092 132 63 38 chr9 55688822 55689248 -62173379 - L1MA5 LINE L1 -3 6297 5861 304 156 65 0 chr9 55689363 55689440 -62173187 - L1MC5 LINE L1 -608 7353 7272 384 229 0 43 chr9 55689576 55689764 -62172863 + CT-rich Low_complexity Low_complexity 1 180 0 629 116 11 63 chr9 55689873 55690063 -62172564 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 * 724 118 30 55 chr9 55690030 55690316 -62172311 + C-rich Low_complexity Low_complexity 1 278 0 581 305 27 4 chr9 55690318 55690574 -62172053 - L1MEc LINE L1 -4693 1703 1442 2105 120 0 7 chr9 55690621 55690913 -62171714 - AluSx SINE Alu -18 294 5 209 268 0 28 chr9 55691222 55691293 -62171334 + CT-rich Low_complexity Low_complexity 3 71 0 1404 114 90 0 chr9 55691326 55691537 -62171090 + MER30 DNA MER1_type 1 230 0 180 0 0 0 chr9 55693081 55693101 -62169526 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 1207 228 70 75 chr9 55693418 55693887 -62168740 - MLT1C LTR MaLR 0 467 1 861 150 75 12 chr9 55694059 55694219 -62168408 + AluJo SINE Alu 87 256 -56 2087 124 0 0 chr9 55694247 55694529 -62168098 + AluSx SINE Alu 15 296 -16 1827 88 73 37 chr9 55695066 55695369 -62167258 - AluY SINE Alu 0 313 1 180 97 0 0 chr9 55695603 55695634 -62166993 + (TG)n Simple_repeat Simple_repeat 2 32 0 248 215 0 15 chr9 55695799 55695864 -62166763 - LTR67 LTR ERVL 0 557 494 261 273 76 34 chr9 55695973 55696172 -62166455 + MLT1I LTR MaLR 84 288 -121 1366 276 49 45 chr9 55696196 55696725 -62165902 - MLT1E LTR MaLR -62 531 1 2373 235 100 5 chr9 55697218 55697847 -62164780 - ERVL LTR ERVL -589 5175 4487 1590 189 43 43 chr9 55697848 55698286 -62164341 - MLT1D LTR MaLR -64 441 4 2605 238 103 40 chr9 55698286 55698646 -62163981 - ERVL LTR ERVL -1795 3969 3633 1749 157 0 25 chr9 55698646 55698932 -62163695 + AluJb SINE Alu 31 309 -3 2605 238 103 40 chr9 55698932 55699421 -62163206 - ERVL LTR ERVL -2131 3633 3066 230 361 0 21 chr9 55699525 55699622 -62163005 + L2 LINE L2 2693 2787 -527 619 292 74 6 chr9 55699642 55699847 -62162780 + MIR SINE MIR 33 247 -15 2385 88 10 0 chr9 55699861 55700168 -62162459 - AluY SINE Alu -1 310 1 436 329 74 46 chr9 55700260 55700343 -62162284 + L2 LINE L2 2911 2990 -323 1029 306 56 14 chr9 55700343 55700788 -62161839 + LTR16B LTR ERVL 1 464 0 436 329 74 46 chr9 55700788 55701096 -62161531 + L2 LINE L2 2990 3313 0 180 111 0 0 chr9 55702375 55702402 -62160225 + (A)n Simple_repeat Simple_repeat 1 27 0 248 293 121 45 chr9 55703601 55703799 -62158828 + MIR SINE MIR 1 213 -49 1068 209 37 4 chr9 55703954 55704198 -62158429 + L1MD1 LINE L1 5752 6003 -239 446 294 33 27 chr9 55705680 55705864 -62156763 + MIR SINE MIR 22 206 -56 2227 122 0 0 chr9 55706444 55706740 -62155887 - AluSx SINE Alu -16 296 1 2216 142 0 0 chr9 55706859 55707168 -62155459 + AluSx SINE Alu 1 309 -3 387 260 73 83 chr9 55707351 55707543 -62155084 + MIR SINE MIR 17 206 -56 1237 112 44 10 chr9 55707545 55707750 -62154877 - Tigger1 DNA MER2_type 0 2418 2207 993 147 0 0 chr9 55707744 55707900 -62154727 - Tigger1 DNA MER2_type -2261 157 2 * 1980 218 101 31 chr9 55708061 55708644 -62153983 + MLT1E2 LTR MaLR 3 626 0 342 0 0 0 chr9 55708853 55708891 -62153736 + (CA)n Simple_repeat Simple_repeat 2 39 0 265 250 15 15 chr9 55708972 55709040 -62153587 - MIR SINE MIR -58 150 83 187 313 0 62 chr9 55709363 55709427 -62153200 + L3 LINE CR1 1493 1552 -25 1509 195 65 57 chr9 55709973 55710358 -62152269 - MLT1B LTR MaLR 0 390 3 2187 118 20 9 chr9 55710423 55710770 -62151857 + THE1A LTR MaLR 3 353 -2 11513 94 15 1 chr9 55710772 55712330 -62150297 + THE1A-int LTR MaLR 1 1580 0 2323 107 8 36 chr9 55712330 55712566 -62150061 + THE1A LTR MaLR 1 225 -130 2421 75 0 3 chr9 55712566 55712871 -62149756 + AluY SINE Alu 3 306 -5 2323 107 8 36 chr9 55712871 55712999 -62149628 + THE1A LTR MaLR 225 355 0 501 265 143 0 chr9 55713588 55713777 -62148850 + MER20 DNA MER1_type 2 217 -2 2171 103 7 13 chr9 55713815 55714116 -62148511 - AluSq SINE Alu -14 299 1 31 26 0 0 chr9 55714480 55714518 -62148109 + AT_rich Low_complexity Low_complexity 1 38 0 201 147 0 0 chr9 55715427 55715461 -62147166 + (T)n Simple_repeat Simple_repeat 1 34 0 699 262 62 14 chr9 55715759 55716049 -62146578 - HAL1 LINE L1 -722 1785 1482 26 30 0 0 chr9 55717622 55717655 -62144972 + AT_rich Low_complexity Low_complexity 1 33 0 202 250 28 14 chr9 55717669 55717741 -62144886 + CT-rich Low_complexity Low_complexity 2 74 0 280 351 54 0 chr9 55717760 55717871 -62144756 - L2 LINE L2 0 3313 3197 2007 124 72 26 chr9 55718083 55718431 -62144196 + THE1B LTR MaLR 1 364 0 206 341 103 40 chr9 55719392 55719518 -62143109 + L2 LINE L2 3133 3266 -6 239 214 83 71 chr9 55719843 55719927 -62142700 - MIR SINE MIR -93 169 85 263 292 116 36 chr9 55720157 55720407 -62142220 - L2 LINE L2 -357 2957 2688 582 273 28 23 chr9 55722097 55722273 -62140354 - MLT1I LTR MaLR 0 409 233 191 260 0 20 chr9 55722477 55722527 -62140100 - L2 LINE L2 -9 3263 3215 318 50 0 0 chr9 55722896 55722936 -62139691 + (TA)n Simple_repeat Simple_repeat 2 41 0 2209 106 0 3 chr9 55722936 55723228 -62139399 - AluSg SINE Alu -19 291 1 1077 209 158 40 chr9 55723377 55723731 -62138896 + MSTD LTR MaLR 1 396 0 451 295 118 54 chr9 55725219 55725592 -62137035 - MLT1K LTR MaLR -53 535 139 1851 109 0 26 chr9 55726339 55726629 -62135998 - AluSg SINE Alu 0 310 29 22 0 0 0 chr9 55727264 55727286 -62135341 + AT_rich Low_complexity Low_complexity 1 22 0 820 150 44 14 chr9 55727583 55727747 -62134880 - MLT1A1 LTR MaLR 0 365 217 369 263 0 0 chr9 55727793 55727888 -62134739 - MLT1A1 LTR MaLR -270 95 1 204 329 31 56 chr9 55728256 55728417 -62134210 + L2 LINE L2 2822 2978 -294 218 250 75 0 chr9 55728475 55728555 -62134072 - L2 LINE L2 -3225 89 4 540 265 15 0 chr9 55728587 55728723 -62133904 - MIR SINE MIR -121 141 4 613 244 85 94 chr9 55729042 55729394 -62133233 - MLT1H1 LTR MaLR 0 555 207 360 328 46 31 chr9 55729452 55729647 -62132980 - MLT1H1 LTR MaLR -357 198 1 538 268 84 96 chr9 55729699 55729949 -62132678 + MIR SINE MIR 2 248 -14 332 324 97 7 chr9 55730271 55730416 -62132211 + L2 LINE L2 3112 3269 -3 28 29 0 0 chr9 55730418 55730453 -62132174 + AT_rich Low_complexity Low_complexity 1 35 0 13117 199 68 31 chr9 55731453 55734045 -62128582 + L1MA6 LINE L1 1 2496 -4866 1762 154 48 38 chr9 55734045 55734416 -62128211 - THE1C LTR MaLR 0 375 1 13117 199 68 31 chr9 55734416 55738142 -62124485 + L1MA6 LINE L1 2496 7358 -4 1696 166 35 0 chr9 55738142 55738481 -62124146 + L1MA5 LINE L1 5940 6294 -6 300 294 28 28 chr9 55738627 55738736 -62123891 - MIR3 SINE MIR -3 205 97 * 393 317 60 18 chr9 55738722 55738889 -62123738 + MIR SINE MIR 80 253 -9 189 0 0 0 chr9 55739197 55739218 -62123409 + (TA)n Simple_repeat Simple_repeat 1 21 0 1972 233 27 49 chr9 55739907 55740434 -62122193 - MLT2B1 LTR ERVL 0 520 6 23 0 0 0 chr9 55740709 55740732 -62121895 + AT_rich Low_complexity Low_complexity 1 23 0 441 306 59 13 chr9 55740732 55740924 -62121703 + MIR SINE MIR 21 216 -46 269 246 127 21 chr9 55740930 55741072 -62121555 - L1MEd LINE L1 -4972 1147 991 310 329 72 63 chr9 55741167 55741486 -62121141 - L1MEd LINE L1 -5229 890 569 2505 220 81 28 chr9 55741491 55741611 -62121016 - L1ME2 LINE L1 -3 6230 6118 2048 67 56 8 chr9 55741611 55741925 -62120702 + AluY SINE Alu 1 327 0 2505 220 81 28 chr9 55741925 55742649 -62119978 - L1ME2 LINE L1 -115 6118 5327 182 128 26 0 chr9 55742655 55742694 -62119933 + CT-rich Low_complexity Low_complexity 2 41 0 5224 93 4 25 chr9 55742805 55743269 -62119358 - L1PA13 LINE L1 -20 6143 5700 2621 30 3 0 chr9 55743269 55743572 -62119055 - AluY SINE Alu -7 304 1 5224 93 4 25 chr9 55743572 55743880 -62118747 - L1PA13 LINE L1 -463 5700 5387 4095 167 34 6 chr9 55743905 55744701 -62117926 + L1P LINE L1 4558 5375 -771 389 220 50 50 chr9 55744708 55744890 -62117737 - L1ME2 LINE L1 -965 5250 5069 2822 134 64 11 chr9 55744906 55745296 -62117331 - L1PA2 LINE L1 -713 5442 4980 6244 17 0 0 chr9 55745296 55746003 -62116624 + L1PA2 LINE L1 5442 6153 -2 2822 134 64 11 chr9 55746003 55746208 -62116419 - L1P1 LINE L1 -1175 4980 4787 1614 266 110 42 chr9 55746235 55747452 -62115175 - L1ME2 LINE L1 -4081 2315 1016 24 0 0 0 chr9 55747642 55747666 -62114961 + AT_rich Low_complexity Low_complexity 1 24 0 1843 127 15 0 chr9 55750281 55750549 -62112078 - AluSg SINE Alu -38 272 1 236 337 41 17 chr9 55752583 55752755 -62109872 - L1ME2 LINE L1 -5940 265 90 335 289 11 91 chr9 55753189 55753376 -62109251 + MIR SINE MIR 90 261 -1 205 195 0 0 chr9 55753959 55754000 -62108627 + T-rich Low_complexity Low_complexity 1 41 0 4914 152 39 1 chr9 55754224 55755098 -62107529 - L1MA7 LINE L1 -10 6281 5375 14151 202 51 12 chr9 55755109 55759032 -62103595 - L1M2 LINE L1 -743 6822 2791 242 234 0 0 chr9 55759111 55759158 -62103469 + MIR SINE MIR 216 262 0 3608 255 60 40 chr9 55759182 55759214 -62103413 - L1M2c LINE L1 -4466 1885 1855 2415 87 0 16 chr9 55759214 55759526 -62103101 + AluY SINE Alu 1 307 -4 3608 255 60 40 chr9 55759526 55759968 -62102659 - L1M2c LINE L1 -4496 1855 1423 1824 133 44 11 chr9 55759968 55760238 -62102389 - AluSx SINE Alu -33 279 1 3608 255 60 40 chr9 55760238 55761777 -62100850 - L1M2c LINE L1 -4928 1423 1 592 273 109 51 chr9 55761809 55762380 -62100247 + L1MC5 LINE L1 7311 7914 -47 453 286 53 18 chr9 55762769 55762940 -62099687 + MIR SINE MIR 43 219 -43 195 290 97 0 chr9 55763005 55763067 -62099560 - L2 LINE L2 -248 3065 2998 232 264 38 38 chr9 55763530 55763636 -62098991 + MLT1J LTR MaLR 119 224 -287 207 328 65 80 chr9 55763856 55764118 -62098509 - L2 LINE L2 -678 2636 2379 25 0 0 0 chr9 55765408 55765433 -62097194 + AT_rich Low_complexity Low_complexity 1 25 0 2394 98 0 0 chr9 55765910 55766216 -62096411 + AluSq SINE Alu 1 306 -7 5837 144 43 1 chr9 55766713 55768338 -62094289 + L1MA4A LINE L1 4615 6297 -6 303 299 67 15 chr9 55768673 55768807 -62093820 - L1ME LINE L1 -314 5850 5710 398 246 46 31 chr9 55768870 55769000 -62093627 - MLT2B1 LTR ERVL -280 134 3 2330 113 0 0 chr9 55769285 55769587 -62093040 + AluSg SINE Alu 1 302 -8 216 209 45 37 chr9 55769722 55769856 -62092771 + (TTATA)n Simple_repeat Simple_repeat 5 139 0 * 297 185 83 6 chr9 55769820 55770030 -62092597 + (TA)n Simple_repeat Simple_repeat 1 226 0 1178 237 101 11 chr9 55770329 55770687 -62091940 + MLT1B LTR MaLR 1 390 0 305 276 184 32 chr9 55771882 55772099 -62090528 + L2 LINE L2 2395 2644 -670 535 341 111 32 chr9 55772423 55773085 -62089542 + L1M4 LINE L1 2984 3722 -2424 1494 159 31 59 chr9 55773085 55773374 -62089253 + AluJo SINE Alu 2 302 0 181 0 0 0 chr9 55773374 55773394 -62089233 + (TAAA)n Simple_repeat Simple_repeat 1 120 0 535 341 111 32 chr9 55773394 55773531 -62089096 + L1M4 LINE L1 3722 3847 -2299 21 36 0 0 chr9 55773747 55773775 -62088852 + AT_rich Low_complexity Low_complexity 1 28 0 1817 297 151 26 chr9 55774069 55774976 -62087651 - L2 LINE L2 -885 2429 1410 726 327 75 29 chr9 55775175 55775560 -62087067 + L2 LINE L2 2911 3313 0 23 0 0 0 chr9 55776132 55776155 -62086472 + AT_rich Low_complexity Low_complexity 1 23 0 394 206 0 0 chr9 55776787 55776860 -62085767 - MER5A DNA MER1_type -86 103 31 1710 146 69 39 chr9 55776952 55777316 -62085311 + THE1C LTR MaLR 1 375 0 9516 131 14 44 chr9 55777318 55778945 -62083682 + THE1C-int LTR MaLR 3 1580 0 1769 150 55 38 chr9 55778948 55779314 -62083313 + THE1C LTR MaLR 4 375 0 1383 245 47 20 chr9 55780076 55780494 -62082133 + MER89 LTR ERV1 31 559 0 6668 195 51 52 chr9 55780494 55781485 -62081142 + MER89-int LTR ERV1 1 1098 -5703 1447 191 56 42 chr9 55781485 55781842 -62080785 + MER47A DNA MER2_type 1 362 -4 6668 195 51 52 chr9 55781842 55782612 -62080015 + MER89-int LTR ERV1 1098 1867 -4934 345 75 0 0 chr9 55782623 55782676 -62079951 + (TC)n Simple_repeat Simple_repeat 2 54 0 754 128 0 48 chr9 55782693 55782818 -62079809 + FRAM SINE Alu 34 152 -24 185 220 0 10 chr9 55782838 55782938 -62079689 + (TA)n Simple_repeat Simple_repeat 1 99 0 319 283 11 0 chr9 55782939 55783031 -62079596 + L1MC4 LINE L1 6608 6700 -1342 303 249 45 20 chr9 55782945 55783083 -62079544 - L1MC4 LINE L1 -1339 6983 1942 * 388 97 28 80 chr9 55783089 55783380 -62079247 + (TATAA)n Simple_repeat Simple_repeat 1 275 0 265 250 0 10 chr9 55783388 55783484 -62079143 + (TA)n Simple_repeat Simple_repeat 1 95 0 1592 210 0 0 chr9 55783484 55783770 -62078857 - AluJo SINE Alu -24 288 3 3329 177 24 22 chr9 55783771 55784443 -62078184 + MER89-int LTR ERV1 1859 2531 -4270 270 351 135 7 chr9 55784904 55785052 -62077575 - MER115 DNA AcHobo -302 391 225 1383 245 47 20 chr9 55785617 55786035 -62076592 + MER89 LTR ERV1 31 559 0 6668 195 51 52 chr9 55786035 55787026 -62075601 + MER89-int LTR ERV1 1 1098 -5703 1417 190 56 45 chr9 55787026 55787384 -62075243 + MER47A DNA MER2_type 1 362 -4 6668 195 51 52 chr9 55787384 55788154 -62074473 + MER89-int LTR ERV1 1098 1867 -4934 345 75 0 0 chr9 55788165 55788218 -62074409 + (TC)n Simple_repeat Simple_repeat 2 54 0 754 128 0 48 chr9 55788235 55788360 -62074267 + FRAM SINE Alu 34 152 -24 185 220 0 10 chr9 55788380 55788480 -62074147 + (TA)n Simple_repeat Simple_repeat 1 99 0 319 283 11 0 chr9 55788481 55788573 -62074054 + L1MC4 LINE L1 6608 6700 -1342 303 249 45 20 chr9 55788487 55788625 -62074002 - L1MC4 LINE L1 -1339 6983 1942 * 313 107 28 79 chr9 55788631 55788808 -62073819 + (TATAA)n Simple_repeat Simple_repeat 5 172 0 254 159 62 17 chr9 55788821 55789063 -62073564 + (TA)n Simple_repeat Simple_repeat 1 252 0 1592 210 0 0 chr9 55789063 55789349 -62073278 - AluJo SINE Alu -24 288 3 3329 177 24 22 chr9 55789350 55790022 -62072605 + MER89-int LTR ERV1 1859 2531 -4270 15541 181 43 20 chr9 55790326 55792778 -62069849 + MER89-int LTR ERV1 2548 5162 -1639 2008 85 0 15 chr9 55792778 55793049 -62069578 - AluY SINE Alu -13 298 32 15541 181 43 20 chr9 55793049 55794725 -62067902 + MER89-int LTR ERV1 5162 6799 -2 1394 214 63 40 chr9 55794726 55795175 -62067452 + MER89 LTR ERV1 1 559 0 954 189 22 6 chr9 55795231 55795411 -62067216 - MER5A DNA MER1_type 0 189 7 42 36 0 0 chr9 55797239 55797295 -62065332 + AT_rich Low_complexity Low_complexity 1 56 0 3218 126 75 4 chr9 55797534 55798025 -62064602 - MER1A DNA MER1_type 0 529 4 2568 156 75 2 chr9 55798330 55798812 -62063815 + L1PB4 LINE L1 5632 6148 -8 354 324 0 18 chr9 55799059 55799170 -62063457 + MER81 DNA DNA 5 113 -1 2327 304 65 21 chr9 55799323 55799722 -62062905 - L2 LINE L2 -529 2785 2405 1630 190 83 27 chr9 55799722 55800096 -62062531 - MSTD LTR MaLR -1 395 1 2327 304 65 21 chr9 55800096 55800647 -62061980 - L2 LINE L2 -909 2405 1793 391 305 197 46 chr9 55801045 55801435 -62061192 + MLT1J LTR MaLR 1 449 -62 325 238 5 31 chr9 55801773 55801883 -62060744 - L1ME LINE L1 -318 5803 5690 766 246 72 35 chr9 55802877 55802949 -62059678 + MLT1G LTR MaLR 1 69 -521 1784 186 22 38 chr9 55802949 55803320 -62059307 - MLT1A1 LTR MaLR 0 365 1 766 246 72 35 chr9 55803320 55803775 -62058852 + MLT1G LTR MaLR 69 587 -3 360 290 36 14 chr9 55804940 55805078 -62057549 + MARNA DNA Mariner 51 191 -395 274 348 33 51 chr9 55805082 55805358 -62057269 + L2 LINE L2 2594 2864 -450 192 344 0 16 chr9 55805455 55805516 -62057111 + L2 LINE L2 3002 3061 -211 205 254 63 16 chr9 55805693 55805756 -62056871 + L2 LINE L2 3202 3267 -5 185 62 0 31 chr9 55805808 55805840 -62056787 + (TTATA)n Simple_repeat Simple_repeat 4 34 0 342 294 12 0 chr9 55805867 55805952 -62056675 + MIR SINE MIR 156 241 -21 28 29 0 0 chr9 55805969 55806004 -62056623 + AT_rich Low_complexity Low_complexity 1 35 0 224 120 20 0 chr9 55807592 55807642 -62054985 + T-rich Low_complexity Low_complexity 5 55 0 680 285 138 52 chr9 55808859 55809339 -62053288 + LTR33A LTR ERVL 1 521 -2 23 0 0 0 chr9 55810439 55810462 -62052165 + AT_rich Low_complexity Low_complexity 1 23 0 1946 149 35 22 chr9 55810607 55810977 -62051650 + THE1C LTR MaLR 1 375 0 8233 124 35 20 chr9 55810977 55811225 -62051402 + THE1C-int LTR MaLR 1 244 -1336 2496 181 43 60 chr9 55811225 55811871 -62050756 - MER41B LTR ERV1 0 635 1 8233 124 35 20 chr9 55811871 55812169 -62050458 + THE1C-int LTR MaLR 244 536 -1044 2726 82 3 3 chr9 55812169 55812524 -62050103 + THE1A LTR MaLR 1 355 0 8233 124 35 20 chr9 55812524 55813248 -62049379 + THE1C-int LTR MaLR 536 1290 -290 1353 114 159 0 chr9 55813385 55813612 -62049015 + THE1C-int LTR MaLR 1314 1576 -4 2124 161 13 11 chr9 55813616 55813988 -62048639 + THE1C LTR MaLR 1 373 -2 9125 133 59 10 chr9 55813990 55815496 -62047131 + THE1C-int LTR MaLR 1 1580 0 1934 144 58 19 chr9 55815496 55815857 -62046770 + THE1C LTR MaLR 1 375 0 215 354 122 42 chr9 55816224 55816651 -62045976 - L2 LINE L2 -337 2977 2517 225 216 14 81 chr9 55816856 55816930 -62045697 + L2 LINE L2 3195 3263 -9 30 27 0 0 chr9 55817623 55817660 -62044967 + AT_rich Low_complexity Low_complexity 1 37 0 233 322 80 75 chr9 55817678 55817917 -62044710 + MIR SINE MIR 5 244 -18 182 273 156 39 chr9 55818388 55818465 -62044162 + L2 LINE L2 3226 3311 -2 348 324 90 22 chr9 55819027 55819344 -62043283 + LTR16A1 LTR ERVL 86 410 -47 22 56 0 0 chr9 55820493 55820529 -62042098 + AT_rich Low_complexity Low_complexity 1 36 0 365 312 102 75 chr9 55820705 55820757 -62041870 - L2 LINE L2 -596 2718 2669 567 161 161 72 chr9 55820757 55820950 -62041677 - MER63A DNA MER1_type 0 210 1 365 312 102 75 chr9 55820950 55821298 -62041329 - L2 LINE L2 -645 2669 2307 406 263 86 56 chr9 55821304 55821502 -62041125 + L1ME3A LINE L1 5962 6165 -5 310 330 41 56 chr9 55821761 55821958 -62040669 + L1ME LINE L1 5328 5521 -600 1310 262 108 13 chr9 55822070 55822459 -62040168 + LTR16A LTR ERVL 16 441 -9 23 0 0 0 chr9 55822739 55822762 -62039865 + AT_rich Low_complexity Low_complexity 1 23 0 1171 320 18 18 chr9 55822830 55823283 -62039344 + LTR16B LTR ERVL 6 458 -6 1361 225 24 50 chr9 55825009 55825387 -62037240 + MLT1A2 LTR MaLR 3 370 -4 340 371 14 35 chr9 55825814 55825957 -62036670 + L2 LINE L2 3116 3255 -17 239 324 120 9 chr9 55825957 55826065 -62036562 - MER91A DNA MER1_type -48 148 29 1040 262 93 6 chr9 55826356 55826669 -62035958 - L3 LINE CR1 -290 1287 948 327 192 0 39 chr9 55827409 55827487 -62035140 - MER116 DNA Mariner -1 79 5 356 305 128 0 chr9 55828699 55828840 -62033787 - MIR SINE MIR -64 198 40 21 57 0 0 chr9 55829147 55829182 -62033445 + AT_rich Low_complexity Low_complexity 1 35 0 279 266 83 79 chr9 55829189 55829479 -62033148 - HAL1 LINE L1 -42 2465 2175 23 0 0 0 chr9 55829771 55829794 -62032833 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr9 55829838 55829866 -62032761 + AT_rich Low_complexity Low_complexity 1 28 0 1178 160 40 0 chr9 55830381 55830581 -62032046 + MLT1A1-int LTR MaLR 1521 1728 -7 1816 164 73 6 chr9 55830588 55830930 -62031697 + MLT1A1 LTR MaLR 1 365 0 378 0 0 0 chr9 55830949 55830991 -62031636 + (CA)n Simple_repeat Simple_repeat 2 43 0 2172 200 92 6 chr9 55832349 55832818 -62029809 + LTR22 LTR ERVK 1 509 0 2096 164 23 60 chr9 55832909 55833007 -62029620 - MER47B DNA MER2_type -1905 418 318 1616 167 37 4 chr9 55833007 55833277 -62029350 + AluJo SINE Alu 3 281 -31 2096 164 23 60 chr9 55833277 55833612 -62029015 - MER47B DNA MER2_type -2005 318 1 3755 131 2 10 chr9 55833635 55833867 -62028760 + L1PB1 LINE L1 5551 5783 -368 456 19 0 0 chr9 55833867 55833920 -62028707 + (TA)n Simple_repeat Simple_repeat 1 53 0 3755 131 2 10 chr9 55833920 55834292 -62028335 + L1PB1 LINE L1 5783 6150 -1 3568 124 22 117 chr9 55834548 55835351 -62027276 + LTR8A LTR ERV1 1 727 0 195 42 0 0 chr9 55835520 55835544 -62027083 + (TGAA)n Simple_repeat Simple_repeat 4 27 0 296 318 9 9 chr9 55836260 55836367 -62026260 + GA-rich Low_complexity Low_complexity 2 108 0 246 62 0 0 chr9 55836653 55836685 -62025942 + (CA)n Simple_repeat Simple_repeat 2 33 0 25 0 0 0 chr9 55836732 55836757 -62025870 + AT_rich Low_complexity Low_complexity 1 25 0 3310 205 179 8 chr9 55837812 55838603 -62024024 - THE1C-int LTR MaLR -722 929 3 1983 167 16 13 chr9 55838607 55838979 -62023648 - THE1C LTR MaLR -2 373 1 1297 124 120 0 chr9 55838983 55839200 -62023427 - THE1C-int LTR MaLR -4 1576 1334 255 61 0 0 chr9 55840865 55840898 -62021729 + (TG)n Simple_repeat Simple_repeat 1 33 0 1994 104 54 0 chr9 55841256 55841534 -62021093 + AluSg SINE Alu 1 293 -17 282 179 0 0 chr9 55841827 55841883 -62020744 + (TTCA)n Simple_repeat Simple_repeat 4 59 0 574 336 77 0 chr9 55841893 55842152 -62020475 - MLT1L LTR MaLR -10 605 327 839 252 14 14 chr9 55842318 55842528 -62020099 + MER63A DNA MER1_type 1 210 0 187 128 0 43 chr9 55843216 55843263 -62019364 + (TTTC)n Simple_repeat Simple_repeat 3 47 0 573 161 125 0 chr9 55843293 55843405 -62019222 - AluJo SINE Alu -30 282 157 424 360 16 26 chr9 55844683 55844872 -62017755 + MER5A DNA MER1_type 3 189 0 338 287 37 9 chr9 55845024 55845132 -62017495 - MLT1I LTR MaLR -2 407 297 2165 67 7 11 chr9 55845505 55845846 -62016781 - AluY SINE Alu 0 340 1 951 170 64 18 chr9 55846460 55846631 -62015996 - AluJo SINE Alu -133 179 1 2643 211 11 49 chr9 55847028 55847597 -62015030 + MLT2B3 LTR ERVL 1 547 -7 286 216 104 60 chr9 55847761 55847895 -62014732 - MIR SINE MIR -6 256 117 654 236 26 37 chr9 55847913 55847971 -62014656 - MER5A DNA MER1_type 0 189 132 2420 75 3 0 chr9 55847971 55848265 -62014362 + AluY SINE Alu 11 305 -6 654 236 26 37 chr9 55848265 55848397 -62014230 - MER5A DNA MER1_type -57 132 1 2234 92 20 3 chr9 55849686 55849981 -62012646 - AluSq SINE Alu -13 300 1 1868 224 37 64 chr9 55850202 55850650 -62011977 + MLT1D LTR MaLR 3 437 -68 1405 160 153 0 chr9 55850650 55850912 -62011715 - AluJb SINE Alu 0 302 1 1868 224 37 64 chr9 55850912 55850980 -62011647 + MLT1D LTR MaLR 437 505 0 1497 255 115 22 chr9 55851093 55851685 -62010942 - MER20B DNA MER1_type -47 736 90 371 219 24 24 chr9 55851689 55851771 -62010856 + AluS SINE Alu 1 82 -221 42 86 0 0 chr9 55851999 55852104 -62010523 + AT_rich Low_complexity Low_complexity 1 105 0 35 113 0 0 chr9 55852162 55852330 -62010297 + AT_rich Low_complexity Low_complexity 1 168 0 1907 147 0 36 chr9 55852417 55852723 -62009904 + AluSx SINE Alu 7 301 -11 242 273 30 0 chr9 55852723 55852789 -62009838 - MER20B DNA MER1_type -681 102 35 533 264 53 101 chr9 55852969 55853325 -62009302 - L1ME LINE L1 -5701 369 31 479 206 176 7 chr9 55854033 55854169 -62008458 - MER5A DNA MER1_type 0 189 31 212 195 228 57 chr9 55854064 55854187 -62008440 + MER5A DNA MER1_type 43 186 -3 * 582 322 53 18 chr9 55856176 55856464 -62006163 - MLT1I LTR MaLR -38 371 101 32 57 0 0 chr9 55856492 55856545 -62006082 + AT_rich Low_complexity Low_complexity 1 53 0 24 0 0 0 chr9 55857272 55857296 -62005331 + AT_rich Low_complexity Low_complexity 1 24 0 227 219 95 9 chr9 55857584 55857689 -62004938 - L1MC4 LINE L1 -26 8016 7903 502 248 7 7 chr9 55857734 55857879 -62004748 - L1MC4 LINE L1 -144 7898 7754 470 219 10 10 chr9 55859168 55859264 -62003363 - MER2 DNA MER2_type -248 97 2 220 189 0 0 chr9 55859569 55859606 -62003021 - L2 LINE L2 -17 3255 3219 692 302 170 34 chr9 55860052 55860463 -62002164 - LTR16C LTR ERVL 0 491 25 206 356 78 17 chr9 55860730 55860845 -62001782 + L2 LINE L2 3188 3309 -4 489 110 0 0 chr9 55862250 55862323 -62000304 + (TA)n Simple_repeat Simple_repeat 2 74 0 229 0 36 89 chr9 55863723 55863779 -61998848 + (TTTTTA)n Simple_repeat Simple_repeat 2 54 0 1593 55 5 0 chr9 55863791 55863992 -61998635 - L1PA3 LINE L1 -3 6152 5951 5796 203 41 40 chr9 55864005 55866504 -61996123 - L1MB7 LINE L1 -31 6651 4162 5276 241 98 24 chr9 55866471 55869671 -61992956 - L1MB7 LINE L1 -3222 3422 6 * 341 316 114 47 chr9 55870091 55870243 -61992384 - L1M4 LINE L1 -2093 4053 3913 2400 78 3 3 chr9 55870243 55870549 -61992078 - AluSg SINE Alu -4 306 1 341 316 114 47 chr9 55870549 55870757 -61991870 - L1M4 LINE L1 -2233 3913 3669 24 53 0 0 chr9 55871114 55871152 -61991475 + AT_rich Low_complexity Low_complexity 1 38 0 418 335 0 23 chr9 55872145 55872321 -61990306 - MLT1K LTR MaLR -22 566 395 559 358 70 16 chr9 55872465 55872851 -61989776 + L2 LINE L2 2892 3298 -15 2811 13 0 0 chr9 55873082 55873391 -61989236 - AluY SINE Alu -2 309 1 3649 145 12 0 chr9 55873537 55874143 -61988484 - L1MA5A LINE L1 -10 6287 5675 213 39 0 0 chr9 55874747 55874773 -61987854 + (TTG)n Simple_repeat Simple_repeat 2 27 0 224 167 21 0 chr9 55875667 55875715 -61986912 + (CA)n Simple_repeat Simple_repeat 2 50 0 836 180 21 37 chr9 55876094 55876283 -61986344 + MER3 DNA MER1_type 7 192 -17 373 265 218 0 chr9 55876315 55876462 -61986165 + MER5A DNA MER1_type 10 188 -1 779 170 41 118 chr9 55876535 55876806 -61985821 - ORSL DNA AcHobo -24 251 2 1884 184 68 27 chr9 55876888 55877327 -61985300 + LTR2B LTR ERV1 34 490 0 404 244 113 36 chr9 55877817 55877985 -61984642 - MIR SINE MIR -1 261 81 2209 164 2 18 chr9 55878071 55878467 -61984160 + MLT1B LTR MaLR 1 390 0 27 29 0 0 chr9 55878621 55878655 -61983972 + AT_rich Low_complexity Low_complexity 1 34 0 647 267 66 20 chr9 55879343 55879749 -61982878 - MLT1F1 LTR MaLR -17 550 4 371 276 9 0 chr9 55880500 55880605 -61982022 + LTR16A LTR ERVL 345 450 0 21 0 0 0 chr9 55880897 55880918 -61981709 + AT_rich Low_complexity Low_complexity 1 21 0 215 295 167 26 chr9 55881092 55881248 -61981379 - MIR SINE MIR -37 225 48 1025 211 5 0 chr9 55881582 55881790 -61980837 + MER3 DNA MER1_type 1 209 0 318 331 40 8 chr9 55882406 55882530 -61980097 + L2 LINE L2 3137 3264 -8 271 254 9 132 chr9 55883996 55884224 -61978403 - L2 LINE L2 -254 3018 2819 229 313 67 30 chr9 55884925 55885059 -61977568 - L2 LINE L2 -5 3308 3170 189 243 0 0 chr9 55885085 55885122 -61977505 - L2 LINE L2 -10 3303 3267 295 269 21 21 chr9 55885163 55885256 -61977371 - L2 LINE L2 -30 3283 3191 1024 209 0 5 chr9 55886092 55886298 -61976329 + MER3 DNA MER1_type 1 205 -4 740 191 53 106 chr9 55886309 55886455 -61976172 - MER33 DNA MER1_type -2262 323 171 1089 182 42 4 chr9 55886455 55886691 -61975936 + L1MB3 LINE L1 5932 6176 -7 740 191 53 106 chr9 55886691 55886893 -61975734 - MER33 DNA MER1_type -2414 171 1 21 0 0 0 chr9 55888112 55888133 -61974494 + AT_rich Low_complexity Low_complexity 1 21 0 270 340 97 21 chr9 55890021 55890165 -61972462 - L2 LINE L2 -22 3250 3096 186 316 0 0 chr9 55890181 55890238 -61972389 - MIR SINE MIR -6 256 200 234 128 0 0 chr9 55890825 55890864 -61971763 + (TA)n Simple_repeat Simple_repeat 2 40 0 1491 218 52 52 chr9 55890955 55891126 -61971501 + MLT1C LTR MaLR 4 174 -293 1979 125 0 7 chr9 55891126 55891413 -61971214 + AluSg SINE Alu 9 293 -17 1491 218 52 52 chr9 55891413 55891705 -61970922 + MLT1C LTR MaLR 173 467 0 247 250 17 0 chr9 55892019 55892079 -61970548 + (TCCA)n Simple_repeat Simple_repeat 4 64 0 26 30 0 0 chr9 55892854 55892887 -61969740 + AT_rich Low_complexity Low_complexity 1 33 0 253 295 0 0 chr9 55892989 55893067 -61969560 + (TA)n Simple_repeat Simple_repeat 1 78 0 543 234 28 93 chr9 55895464 55895678 -61966949 + MIR SINE MIR 49 248 -14 1114 61 8 0 chr9 55895754 55895885 -61966742 - AluY SINE Alu -179 132 1 267 79 0 0 chr9 55896282 55896320 -61966307 + (CA)n Simple_repeat Simple_repeat 2 39 0 220 262 123 80 chr9 55896795 55896982 -61965645 + MIR SINE MIR 67 261 -1 190 400 68 13 chr9 55897699 55897934 -61964693 + L3b LINE CR1 1117 1364 -219 243 0 0 0 chr9 55899145 55899172 -61963455 + (T)n Simple_repeat Simple_repeat 1 27 0 399 243 112 53 chr9 55899526 55899678 -61962949 - L2 LINE L2 0 3313 3153 358 258 157 19 chr9 55899712 55899871 -61962756 - LTR16C LTR ERVL -3 488 308 596 305 40 7 chr9 55900642 55900907 -61961720 - ERVL LTR ERVL -497 4998 4721 2158 121 20 0 chr9 55902052 55902350 -61960277 + AluSq SINE Alu 1 304 -9 324 327 47 38 chr9 55902408 55902619 -61960008 + L1ME LINE L1 5561 5773 -391 890 307 84 9 chr9 55902649 55903079 -61959548 - MLT1J LTR MaLR -35 476 15 238 337 24 0 chr9 55903431 55903514 -61959113 + MIR SINE MIR 178 262 0 190 286 179 12 chr9 55903656 55903824 -61958803 - L2 LINE L2 0 3313 3118 356 220 20 7 chr9 55903846 55903996 -61958631 + (TA)n Simple_repeat Simple_repeat 2 153 0 186 133 0 0 chr9 55903998 55904028 -61958599 + (TG)n Simple_repeat Simple_repeat 2 31 0 333 307 63 29 chr9 55904100 55904305 -61958322 - L2 LINE L2 -337 2977 2766 1573 210 31 24 chr9 55904319 55904700 -61957927 - MLT1D LTR MaLR 0 505 122 26 50 0 0 chr9 55905371 55905411 -61957216 + AT_rich Low_complexity Low_complexity 1 40 0 402 259 10 83 chr9 55905866 55906059 -61956568 - MLT1J LTR MaLR -1 510 332 325 200 0 0 chr9 55906428 55906498 -61956129 + MER116 DNA Mariner 1 70 -10 1634 217 69 45 chr9 55907659 55908152 -61954475 - MLT1D LTR MaLR 0 505 1 1409 217 0 14 chr9 55908355 55908641 -61953986 + AluJo SINE Alu 1 282 -30 21 57 0 0 chr9 55908754 55908789 -61953838 + AT_rich Low_complexity Low_complexity 1 35 0 183 276 171 16 chr9 55908790 55908913 -61953714 - MIR SINE MIR -1 261 120 329 331 82 44 chr9 55909128 55909618 -61953009 - L2 LINE L2 -163 3109 2607 552 312 51 40 chr9 55910574 55910946 -61951681 - L1M4 LINE L1 -775 5371 4996 268 273 145 24 chr9 55911011 55911300 -61951327 - L1M4 LINE L1 -3558 2588 2265 210 194 0 0 chr9 55911356 55911392 -61951235 - MIR SINE MIR -26 236 201 341 380 0 0 chr9 55911709 55911875 -61950752 + LTR67 LTR ERVL 36 201 -356 2070 124 35 51 chr9 55911890 55912260 -61950367 + THE1B LTR MaLR 1 364 0 5247 124 8 0 chr9 55912260 55913063 -61949564 + THE1B-int LTR MaLR 1 809 -771 411 203 32 46 chr9 55913210 55913380 -61949247 - LTR28 LTR ERV1 -565 220 109 324 254 34 0 chr9 55913613 55913713 -61948914 - LTR28 LTR ERV1 -928 92 1 289 283 63 19 chr9 55913713 55913871 -61948756 + LTR33A LTR ERVL 357 521 -2 2418 159 21 33 chr9 55914508 55915112 -61947515 - MER4E LTR ERV1 0 779 1 24 53 0 0 chr9 55915286 55915324 -61947303 + AT_rich Low_complexity Low_complexity 1 38 0 255 356 0 0 chr9 55915693 55915766 -61946861 - L2 LINE L2 -17 3255 3183 483 332 71 30 chr9 55917238 55917696 -61944931 - L2 LINE L2 -122 3191 2718 261 330 64 11 chr9 55917654 55917769 -61944858 - MIR SINE MIR -70 138 19 * 520 319 47 0 chr9 55918526 55918695 -61943932 + L2 LINE L2 39 215 -3099 518 43 14 0 chr9 55918697 55918766 -61943861 + (CA)n Simple_repeat Simple_repeat 2 71 0 180 328 101 25 chr9 55918815 55918934 -61943693 + L2 LINE L2 3113 3240 -73 280 259 0 0 chr9 55918992 55919046 -61943581 + L2 LINE L2 3251 3304 -9 1874 174 0 0 chr9 55919061 55919360 -61943267 + AluSx SINE Alu 1 299 -13 198 333 233 0 chr9 55919463 55919583 -61943044 - L2 LINE L2 0 3272 3125 22 70 0 0 chr9 55920432 55920475 -61942152 + AT_rich Low_complexity Low_complexity 1 43 0 262 313 0 0 chr9 55920634 55920701 -61941926 + MER5A DNA MER1_type 72 138 -51 264 263 79 27 chr9 55921131 55921388 -61941239 - L1M4 LINE L1 -2172 3974 3702 258 32 0 0 chr9 55921403 55921434 -61941193 + (TG)n Simple_repeat Simple_repeat 1 31 0 364 335 93 13 chr9 55921546 55921847 -61940780 + L1M4 LINE L1 4157 4481 -1665 300 70 0 0 chr9 55922531 55922574 -61940053 + (TG)n Simple_repeat Simple_repeat 2 44 0 1157 193 18 57 chr9 55924089 55924421 -61938206 + MER33 DNA MER1_type 5 323 -1 188 232 87 43 chr9 55925033 55925102 -61937525 - MIR SINE MIR -74 188 117 984 207 5 0 chr9 55925418 55925606 -61937021 - MER5A DNA MER1_type 0 189 1 186 191 0 0 chr9 55925829 55925876 -61936751 + GA-rich Low_complexity Low_complexity 2 48 0 425 126 29 29 chr9 55926076 55926179 -61936448 + GA-rich Low_complexity Low_complexity 2 104 0 234 150 0 0 chr9 55926184 55926224 -61936403 + (GGA)n Simple_repeat Simple_repeat 3 42 0 324 340 198 0 chr9 55927235 55927447 -61935180 - MIR SINE MIR -6 256 3 180 115 19 39 chr9 55927796 55927848 -61934779 + (CA)n Simple_repeat Simple_repeat 2 52 0 277 370 26 13 chr9 55927875 55928029 -61934598 - MIR3 SINE MIR -17 191 36 185 262 196 19 chr9 55929184 55929291 -61933336 + L3 LINE CR1 1158 1283 -294 712 261 17 0 chr9 55929292 55929472 -61933155 + MER5A DNA MER1_type 6 188 -1 190 279 191 0 chr9 55929675 55929743 -61932884 - L3 LINE CR1 -123 1454 1374 908 276 12 23 chr9 55930227 55930484 -61932143 + MIR SINE MIR 6 259 -3 299 331 120 17 chr9 55931964 55932139 -61930488 + L3 LINE CR1 145 337 -1240 611 162 28 35 chr9 55932314 55932456 -61930171 - Charlie1 DNA MER1_type -2 2759 2619 * 1005 209 49 4 chr9 55932436 55932661 -61929966 - Charlie1 DNA MER1_type -2519 242 8 218 307 134 50 chr9 55933177 55933519 -61929108 - L2 LINE L2 -339 2975 2605 195 326 0 20 chr9 55933533 55933582 -61929045 + MIR SINE MIR 24 71 -191 722 289 66 4 chr9 55935652 55935880 -61926747 - MIR SINE MIR -1 261 20 522 277 38 38 chr9 55937806 55937990 -61924637 - MIR SINE MIR 0 262 79 476 331 35 6 chr9 55938899 55939071 -61923556 - MIR3 SINE MIR -4 204 28 262 306 44 60 chr9 55939681 55939864 -61922763 - MLT1J LTR MaLR -331 180 1 1264 167 66 44 chr9 55940084 55940358 -61922269 + MER33 DNA MER1_type 1 284 -2301 1489 202 33 39 chr9 55940358 55940665 -61921962 + AluJo SINE Alu 1 305 -7 1264 167 66 44 chr9 55940665 55940707 -61921920 + MER33 DNA MER1_type 284 324 0 2020 147 17 22 chr9 55941457 55941818 -61920809 + MER84 LTR ERVI 149 507 0 233 160 46 8 chr9 55941869 55942000 -61920627 + (TA)n Simple_repeat Simple_repeat 2 137 0 437 299 22 16 chr9 55942240 55942424 -61920203 + L1M4 LINE L1 2210 2394 -3752 54 40 0 0 chr9 55942537 55942612 -61920015 + AT_rich Low_complexity Low_complexity 1 75 0 413 266 43 53 chr9 55942634 55942822 -61919805 + L1M4 LINE L1 2956 3141 -3005 271 321 63 42 chr9 55942845 55943275 -61919352 + L1M4 LINE L1 3323 3761 -2385 273 227 49 68 chr9 55943301 55943464 -61919163 + L1M4 LINE L1 3818 3977 -2169 719 228 69 47 chr9 55943469 55943702 -61918925 - MLT1A1 LTR MaLR -5 360 123 264 324 75 0 chr9 55943704 55943877 -61918750 + L1M4 LINE L1 4628 4813 -1333 4075 206 70 41 chr9 55944194 55944723 -61917904 - Charlie1a DNA MER1_type -1569 1192 680 2050 137 0 0 chr9 55944723 55945015 -61917612 + AluSx SINE Alu 3 294 -18 4075 206 70 41 chr9 55945015 55945643 -61916984 - Charlie1a DNA MER1_type -2081 680 1 2214 98 3 0 chr9 55945857 55946144 -61916483 - AluSq SINE Alu -24 289 2 28 29 0 0 chr9 55946227 55946262 -61916365 + AT_rich Low_complexity Low_complexity 1 35 0 11152 38 6 0 chr9 55946362 55947718 -61914909 - L1P LINE L1 -1404 4742 3379 7720 14 1 0 chr9 55947718 55949108 -61913519 + L1PA3 LINE L1 4778 6168 0 2073 131 43 6 chr9 55949108 55949459 -61913168 + L1MB3 LINE L1 5816 6179 -4 492 346 141 9 chr9 55949724 55950071 -61912556 + L2 LINE L2 2921 3313 0 361 230 67 37 chr9 55950072 55950207 -61912420 + MIR SINE MIR 106 244 -18 261 209 164 0 chr9 55952264 55952331 -61910296 - L1ME LINE L1 -482 5639 5562 382 278 37 13 chr9 55952525 55952687 -61909940 + L1MDa LINE L1 1768 1974 -4614 666 325 135 45 chr9 55952936 55954016 -61908611 + L1MEd LINE L1 167 1343 -4862 245 226 75 32 chr9 55954207 55954300 -61908327 + L1MEd LINE L1 1599 1695 -4701 16979 34 1 0 chr9 55954357 55957174 -61905453 - L1PA2 LINE L1 -2 6153 3335 2664 32 0 10 chr9 55959406 55959717 -61902910 + AluY SINE Alu 1 308 -3 231 290 32 21 chr9 55959887 55959980 -61902647 - MIR3 SINE MIR -6 202 109 272 295 161 0 chr9 55960089 55960201 -61902426 - L2 LINE L2 -6 3266 3137 2449 166 31 15 chr9 55960421 55960898 -61901729 - L1MB2 LINE L1 -3 6168 5684 330 26 0 0 chr9 55960997 55961036 -61901591 + (TG)n Simple_repeat Simple_repeat 2 40 0 2845 100 34 7 chr9 55961284 55961694 -61900933 - THE1-int LTR MaLR -84 1496 1076 1809 45 0 0 chr9 55962172 55962393 -61900234 - L1PA5 LINE L1 -4 6150 5930 240 267 17 0 chr9 55962493 55962553 -61900074 - MIR SINE MIR -83 179 119 233 247 106 35 chr9 55962633 55962718 -61899909 - MIR SINE MIR -161 101 11 402 294 12 38 chr9 55962843 55963003 -61899624 - MIR SINE MIR -61 201 46 216 0 0 0 chr9 55964577 55964601 -61898026 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 388 234 314 0 chr9 55964869 55965006 -61897621 + MER5A DNA MER1_type 9 188 -1 225 212 144 38 chr9 55966458 55966472 -61896155 - L1MA10 LINE L1 -2 6332 6319 833 190 99 24 chr9 55966472 55966683 -61895944 - L1ME1 LINE L1 -5 6161 5935 29 0 0 0 chr9 55966695 55966724 -61895903 + AT_rich Low_complexity Low_complexity 1 29 0 437 271 43 21 chr9 55966781 55966921 -61895706 + MIR SINE MIR 14 156 -106 2451 42 0 39 chr9 55967030 55967341 -61895286 - AluY SINE Alu -12 299 1 39 0 0 0 chr9 55968012 55968051 -61894576 + AT_rich Low_complexity Low_complexity 1 39 0 274 350 8 25 chr9 55969538 55969658 -61892969 - MIR SINE MIR -113 149 32 181 93 0 70 chr9 55970251 55970294 -61892333 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 239 286 155 42 chr9 55970638 55970806 -61891821 + MER5A DNA MER1_type 2 188 -1 24 53 0 0 chr9 55971102 55971140 -61891487 + AT_rich Low_complexity Low_complexity 1 38 0 1153 271 77 32 chr9 55971287 55971729 -61890898 + LTR16B LTR ERVL 3 464 0 235 257 209 40 chr9 55971867 55972015 -61890612 + MER5A DNA MER1_type 16 188 -1 24 53 0 0 chr9 55972311 55972349 -61890278 + AT_rich Low_complexity Low_complexity 1 38 0 1393 265 70 25 chr9 55972494 55972936 -61889691 + LTR16B LTR ERVL 3 464 0 612 257 98 16 chr9 55973695 55973878 -61888749 + MIR SINE MIR 1 198 -64 202 296 99 21 chr9 55973923 55974065 -61888562 + L2 LINE L2 3149 3301 -12 217 326 95 11 chr9 55975566 55975661 -61886966 + L2 LINE L2 3202 3304 -9 808 261 19 77 chr9 55975860 55976120 -61886507 - MIR SINE MIR -16 246 2 193 195 0 0 chr9 55976197 55976238 -61886389 - L2 LINE L2 0 3313 3273 2207 122 0 6 chr9 55976763 55977074 -61885553 + AluSx SINE Alu 2 310 -2 1128 244 83 6 chr9 55977092 55977404 -61885223 + MER2 DNA MER2_type 1 336 -9 248 294 124 41 chr9 55979253 55979447 -61883180 - MIR SINE MIR -48 214 5 533 283 61 42 chr9 55979469 55979577 -61883050 + L2 LINE L2 2440 2544 -770 2346 88 0 3 chr9 55979577 55979874 -61882753 - AluY SINE Alu -15 296 1 533 283 61 42 chr9 55979874 55979977 -61882650 + L2 LINE L2 2544 2655 -659 1528 241 32 28 chr9 55980000 55980530 -61882097 - L1M4 LINE L1 -912 5234 4703 220 284 84 42 chr9 55980530 55980625 -61882002 + L2 LINE L2 2912 3010 -303 219 88 0 0 chr9 55981081 55981115 -61881512 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 43 56 0 0 chr9 55981603 55981674 -61880953 + AT_rich Low_complexity Low_complexity 1 71 0 304 293 58 63 chr9 55981702 55981851 -61880776 + L2 LINE L2 2219 2368 -946 1083 274 71 8 chr9 55981851 55982230 -61880397 - MLT1I LTR MaLR -4 405 3 304 293 58 63 chr9 55982230 55982271 -61880356 + L2 LINE L2 2368 2408 -906 248 253 280 0 chr9 55982271 55982421 -61880206 + MLT1J2 LTR MaLR 2 193 -257 582 359 117 18 chr9 55982566 55983112 -61879515 + L2 LINE L2 2360 2959 -355 282 255 0 69 chr9 55983374 55983476 -61879151 + MIR SINE MIR 155 249 -13 303 234 0 0 chr9 55984094 55984158 -61878469 + MER103 DNA DNA 23 86 -80 262 314 157 0 chr9 55984434 55984555 -61878072 + MIR3 SINE MIR 37 176 -32 1336 176 0 33 chr9 55984684 55984928 -61877699 + AluJb SINE Alu 55 290 -22 2012 112 58 7 chr9 55985508 55985803 -61876824 - AluSg SINE Alu 0 310 1 387 0 0 0 chr9 55986524 55986567 -61876060 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 1505 267 55 60 chr9 55987384 55987980 -61874647 - MLT1E LTR MaLR 0 593 1 483 377 67 16 chr9 55988156 55988586 -61874041 + L2 LINE L2 1862 2313 -1001 2308 99 0 3 chr9 55988855 55989158 -61873469 + AluY SINE Alu 1 302 -9 261 355 89 18 chr9 55989667 55989836 -61872791 + L2 LINE L2 3132 3312 -1 285 75 0 0 chr9 55990813 55990853 -61871774 + (TG)n Simple_repeat Simple_repeat 1 40 0 30 0 0 0 chr9 55990937 55990967 -61871660 + AT_rich Low_complexity Low_complexity 1 30 0 7506 20 6 0 chr9 55991139 55992415 -61870212 + L1PA3 LINE L1 4856 6136 -19 1354 207 108 13 chr9 55992515 55992898 -61869729 + LTR40a LTR ERVL 17 444 -75 374 80 0 0 chr9 55992898 55992948 -61869679 - LTR40a LTR ERVL 0 519 470 281 168 10 40 chr9 55993195 55993241 -61869386 + CT-rich Low_complexity Low_complexity 2 48 -51 2058 165 0 0 chr9 55993241 55993550 -61869077 - AluSx SINE Alu -3 309 1 281 168 10 40 chr9 55993550 55993604 -61869023 + CT-rich Low_complexity Low_complexity 48 99 0 357 24 0 0 chr9 55993735 55993777 -61868850 + (CA)n Simple_repeat Simple_repeat 1 42 0 249 301 124 0 chr9 55993879 55993992 -61868635 + LTR33 LTR ERVL 389 515 -6 2266 115 0 10 chr9 55996785 55997099 -61865528 - AluY SINE Alu 0 311 1 275 353 81 35 chr9 55997420 55997678 -61864949 - L2 LINE L2 -58 3255 2986 948 260 98 35 chr9 55997817 55998336 -61864291 + L1MC4 LINE L1 7303 7854 -188 309 315 48 75 chr9 55998395 55998583 -61864044 - L2 LINE L2 -585 2729 2550 2027 103 72 7 chr9 55998583 55998875 -61863752 + AluSx SINE Alu 1 311 -1 309 315 48 75 chr9 55998875 55998978 -61863649 - L2 LINE L2 -764 2550 2446 1691 183 77 3 chr9 55998998 55999337 -61863290 - MLT1A1 LTR MaLR -1 364 1 417 278 97 0 chr9 56000545 56000689 -61861938 + LTR33 LTR ERVL 358 515 -6 2157 110 24 3 chr9 56001892 56002183 -61860444 - AluSx SINE Alu -15 297 1 322 234 28 99 chr9 56002788 56002929 -61859698 + L1MC4a LINE L1 5780 5910 -1898 181 382 168 16 chr9 56003253 56003575 -61859052 - L2 LINE L2 -95 3177 2807 26 30 0 0 chr9 56005401 56005434 -61857193 + AT_rich Low_complexity Low_complexity 1 33 0 23 54 0 0 chr9 56005451 56005488 -61857139 + AT_rich Low_complexity Low_complexity 1 37 0 382 335 102 20 chr9 56005782 56006075 -61856552 - L2 LINE L2 -668 2646 2330 532 252 17 0 chr9 56006082 56006201 -61856426 - MIR SINE MIR -98 164 44 238 239 60 0 chr9 56006781 56006848 -61855779 + MIR SINE MIR 69 139 -123 195 338 0 0 chr9 56007152 56007223 -61855404 + L2 LINE L2 3187 3257 -15 251 236 0 0 chr9 56007412 56007467 -61855160 + T-rich Low_complexity Low_complexity 1 55 0 205 358 15 45 chr9 56009006 56009140 -61853487 - MIR SINE MIR -59 203 74 656 348 92 26 chr9 56009332 56009910 -61852717 + L2 LINE L2 2047 2662 -652 2227 121 0 16 chr9 56009994 56010309 -61852318 + AluSx SINE Alu 1 310 -2 183 368 123 9 chr9 56011013 56011119 -61851508 - MIR3 SINE MIR -14 194 77 324 0 0 0 chr9 56012408 56012444 -61850183 + (TG)n Simple_repeat Simple_repeat 1 36 0 367 351 23 46 chr9 56013409 56013583 -61849044 - MIR3 SINE MIR -28 180 11 510 263 216 17 chr9 56014041 56014273 -61848354 + MLT1K LTR MaLR 303 580 -8 190 289 0 0 chr9 56014850 56014895 -61847732 - L2 LINE L2 -871 2443 2399 196 209 15 15 chr9 56015001 56015068 -61847559 + CT-rich Low_complexity Low_complexity 3 69 0 1031 56 14 0 chr9 56015128 56015270 -61847357 + (TTTC)n Simple_repeat Simple_repeat 1 144 0 21 36 0 0 chr9 56015718 56015746 -61846881 + AT_rich Low_complexity Low_complexity 1 28 0 441 265 112 20 chr9 56016360 56016556 -61846071 - MIR SINE MIR 0 262 49 355 127 0 25 chr9 56016763 56016842 -61845785 + (TC)n Simple_repeat Simple_repeat 2 78 0 386 212 146 22 chr9 56016842 56016979 -61845648 + MIR SINE MIR 109 262 0 1014 213 10 9 chr9 56017177 56017483 -61845144 + MSTD LTR MaLR 2 382 -14 636 308 139 8 chr9 56018931 56019327 -61843300 + MLT1J2 LTR MaLR 1 448 -2 348 77 0 0 chr9 56019345 56019397 -61843230 + (TG)n Simple_repeat Simple_repeat 1 52 0 351 272 80 0 chr9 56019493 56019618 -61843009 + L1ME4a LINE L1 5982 6116 -5 365 306 125 97 chr9 56019782 56020213 -61842414 - L2 LINE L2 -1 3271 2829 982 266 81 16 chr9 56020625 56021058 -61841569 - MLT1C LTR MaLR 0 467 7 2033 134 3 10 chr9 56024245 56024550 -61838077 - AluSx SINE Alu -9 303 1 303 253 121 47 chr9 56024634 56024824 -61837803 + MLT1J2 LTR MaLR 65 268 -182 186 231 0 0 chr9 56025211 56025250 -61837377 - MIR3 SINE MIR -39 169 131 199 217 256 62 chr9 56025427 56025556 -61837071 - MIR3 SINE MIR -16 192 39 442 330 95 7 chr9 56026293 56026599 -61836028 - MARNA DNA Mariner -219 367 35 278 225 6 50 chr9 56026734 56026894 -61835733 + GA-rich Low_complexity Low_complexity 2 154 0 28 29 0 0 chr9 56027797 56027832 -61834795 + AT_rich Low_complexity Low_complexity 1 35 0 2230 122 0 0 chr9 56028142 56028438 -61834189 + AluSx SINE Alu 1 296 -16 1889 197 137 7 chr9 56028627 56029074 -61833553 + MLT1D LTR MaLR 1 505 0 234 323 128 0 chr9 56029279 56029412 -61833215 - MIR SINE MIR -64 198 49 212 311 0 16 chr9 56029650 56029711 -61832916 + MIR SINE MIR 112 171 -91 33254 42 36 3 chr9 56031869 56036260 -61826367 + L1P LINE L1 1 4534 -1612 1579 86 0 0 chr9 56036360 56036557 -61826070 - AluY SINE Alu -114 197 1 941 233 168 7 chr9 56036779 56037071 -61825556 + MER58B DNA MER1_type 3 341 0 251 233 6 49 chr9 56037093 56037256 -61825371 + CT-rich Low_complexity Low_complexity 3 158 0 288 70 0 0 chr9 56038019 56038062 -61824565 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 640 285 106 38 chr9 56038468 56038781 -61823846 - LTR33 LTR ERVL 0 521 172 267 93 0 0 chr9 56038781 56038824 -61823803 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 640 285 106 38 chr9 56038824 56038927 -61823700 - LTR33 LTR ERVL -349 172 77 530 271 20 54 chr9 56039498 56039701 -61822926 + MIR3 SINE MIR 13 208 0 180 0 0 0 chr9 56041830 56041850 -61820777 + (GA)n Simple_repeat Simple_repeat 1 20 0 304 337 28 39 chr9 56042080 56042261 -61820366 + L2 LINE L2 3134 3312 -1 303 268 87 55 chr9 56042899 56043026 -61819601 + L2 LINE L2 3137 3267 -5 2149 154 11 8 chr9 56043945 56044309 -61818318 + MLT1A1 LTR MaLR 1 365 0 198 271 111 51 chr9 56045014 56045163 -61817464 + MIR SINE MIR 38 213 -49 182 291 55 0 chr9 56045207 56045262 -61817365 + MIR SINE MIR 198 255 -7 189 237 53 0 chr9 56045568 56045606 -61817021 + MIR SINE MIR 204 243 -19 24 0 0 0 chr9 56045695 56045719 -61816908 + AT_rich Low_complexity Low_complexity 1 24 0 232 244 82 73 chr9 56045761 56046164 -61816463 - L1MD3 LINE L1 -1 8041 7633 23 0 0 71 chr9 56046300 56046342 -61816285 + AT_rich Low_complexity Low_complexity 1 39 0 1729 161 56 11 chr9 56046407 56046693 -61815934 + AluJb SINE Alu 1 299 -13 808 239 39 8 chr9 56046845 56047105 -61815522 + L1MB8 LINE L1 5899 6166 -12 251 120 0 40 chr9 56047112 56047162 -61815465 + (GGAA)n Simple_repeat Simple_repeat 1 48 0 1857 157 7 27 chr9 56049585 56049879 -61812748 - AluJo SINE Alu -24 288 1 1914 204 41 73 chr9 56050948 56051512 -61811115 + MLT2B3 LTR ERVL 1 546 -8 596 219 30 18 chr9 56051579 56051743 -61810884 + LTR41 LTR ERVL 1 166 -607 237 164 0 45 chr9 56052198 56052265 -61810362 + LTR41 LTR ERVL 693 756 -17 237 283 0 0 chr9 56052289 56052342 -61810285 + L2 LINE L2 3213 3265 -7 1577 214 31 48 chr9 56052586 56053007 -61809620 - MLT2D LTR ERVL 0 414 1 21 36 0 0 chr9 56054931 56054959 -61807668 + AT_rich Low_complexity Low_complexity 1 28 0 1565 187 0 17 chr9 56055391 56055690 -61806937 - AluJo SINE Alu -18 294 1 2136 142 0 7 chr9 56055704 56056013 -61806614 - AluSx SINE Alu 0 312 6 2050 124 20 3 chr9 56056489 56056788 -61805839 - AluSq SINE Alu -9 304 1 195 300 17 17 chr9 56056997 56057057 -61805570 + MER5A DNA MER1_type 130 189 0 2505 140 23 26 chr9 56057270 56057698 -61804929 - MSTC LTR MaLR -1 427 1 2074 120 0 14 chr9 56058323 56058654 -61803973 - AluSx SINE Alu 0 327 1 372 325 97 35 chr9 56059044 56059272 -61803355 + MIR SINE MIR 8 249 -13 486 252 87 0 chr9 56059430 56059545 -61803082 - L2 LINE L2 0 3313 3189 234 0 0 0 chr9 56059597 56059623 -61803004 + (CA)n Simple_repeat Simple_repeat 2 27 0 2259 127 33 28 chr9 56060797 56061159 -61801468 + THE1B LTR MaLR 1 364 0 376 299 68 21 chr9 56062845 56063002 -61799625 + MER102b DNA MER1_type 97 270 -1158 1037 239 5 0 chr9 56063002 56063220 -61799407 + MER20 DNA MER1_type 1 219 0 376 299 68 21 chr9 56063220 56063296 -61799331 + MER102b DNA MER1_type 270 341 0 696 137 0 0 chr9 56063452 56063554 -61799073 - AluS SINE Alu -211 102 1 215 170 0 19 chr9 56063555 56063608 -61799019 + CT-rich Low_complexity Low_complexity 2 53 0 342 0 0 0 chr9 56063737 56063775 -61798852 + (CA)n Simple_repeat Simple_repeat 1 38 0 182 365 29 39 chr9 56064649 56064753 -61797874 + MIR SINE MIR 157 259 -3 467 147 0 0 chr9 56065260 56065335 -61797292 + MADE1 DNA Mariner 5 79 -1 2127 113 0 0 chr9 56065483 56065789 -61796838 - AluSg SINE Alu 0 306 1 294 279 0 0 chr9 56065936 56066004 -61796623 + MIR3 SINE MIR 108 175 -33 2053 127 25 51 chr9 56066086 56066640 -61795987 + MER51A LTR ERV1 1 634 0 193 133 0 67 chr9 56066643 56066688 -61795939 + L2 LINE L2 3270 3311 -2 39 38 0 0 chr9 56066792 56066845 -61795782 + AT_rich Low_complexity Low_complexity 1 53 0 1842 274 140 70 chr9 56066935 56067319 -61795308 + HAL1 LINE L1 1 357 -2150 794 249 12 0 chr9 56067319 56067492 -61795135 + MER45A DNA AcHobo 2 176 -2 1842 274 140 70 chr9 56067492 56068627 -61794000 + HAL1 LINE L1 357 1411 -1096 1883 112 0 7 chr9 56068627 56068912 -61793715 + L1PA8 LINE L1 5888 6170 -2 1842 274 140 70 chr9 56068912 56069246 -61793381 + HAL1 LINE L1 1411 1720 -787 1519 209 13 16 chr9 56069246 56069557 -61793070 - AluJo SINE Alu -2 310 1 1842 274 140 70 chr9 56069557 56070034 -61792593 + HAL1 LINE L1 1720 2496 -11 21 0 0 0 chr9 56070086 56070107 -61792520 + AT_rich Low_complexity Low_complexity 1 21 0 2058 72 0 8 chr9 56070467 56070729 -61791898 - AluY SINE Alu -5 306 47 230 406 29 14 chr9 56071146 56071284 -61791343 - MIR3 SINE MIR -49 159 20 232 172 17 35 chr9 56071687 56071745 -61790882 + CT-rich Low_complexity Low_complexity 4 60 0 748 185 110 0 chr9 56073208 56073354 -61789273 - MLT2F LTR ERVL -2 661 500 * 1502 195 60 71 chr9 56073349 56073801 -61788826 - MLT1C LTR MaLR -14 453 7 1302 248 153 5 chr9 56073811 56074211 -61788416 - MLT2F LTR ERVL -203 460 2 1893 177 17 14 chr9 56074290 56074652 -61787975 - MLT1A1 LTR MaLR -2 363 1 303 309 79 7 chr9 56075027 56075166 -61787461 + MIR SINE MIR 109 257 -5 210 259 19 0 chr9 56075169 56075223 -61787404 + CT-rich Low_complexity Low_complexity 2 56 0 270 56 0 0 chr9 56076718 56076754 -61785873 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 28 29 0 0 chr9 56078495 56078530 -61784097 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr9 56078765 56078788 -61783839 + AT_rich Low_complexity Low_complexity 1 23 0 206 32 32 0 chr9 56078854 56078885 -61783742 + (CAAAAA)n Simple_repeat Simple_repeat 3 34 0 1881 130 50 3 chr9 56080189 56080511 -61782116 + L1MA8 LINE L1 5945 6281 -10 252 0 0 0 chr9 56080736 56080764 -61781863 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 241 260 95 125 chr9 56081148 56081475 -61781152 - MLT1L LTR MaLR -170 389 25 213 302 189 0 chr9 56081631 56081737 -61780890 - MIR3 SINE MIR -48 160 35 351 0 0 0 chr9 56083545 56083584 -61779043 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3736 213 27 20 chr9 56083590 56084546 -61778081 + L1MC2 LINE L1 4848 5816 -528 2492 166 46 0 chr9 56084546 56084975 -61777652 + L1MA9 LINE L1 5858 6311 -1 3736 213 27 20 chr9 56084975 56085507 -61777120 + L1MC2 LINE L1 5816 6342 -2 2235 113 0 3 chr9 56085718 56086028 -61776599 + AluSg1 SINE Alu 1 309 0 3151 161 39 25 chr9 56086525 56086890 -61775737 + L1MB1 LINE L1 5586 5963 -205 1166 174 51 123 chr9 56086890 56087281 -61775346 - MLT1A1 LTR MaLR -2 363 1 3151 161 39 25 chr9 56087281 56087485 -61775142 + L1MB1 LINE L1 5963 6163 -5 398 272 123 36 chr9 56088456 56088651 -61773976 + L2 LINE L2 2898 3109 -204 181 274 48 0 chr9 56088684 56088746 -61773881 + L2 LINE L2 3248 3312 -1 234 0 0 0 chr9 56089322 56089348 -61773279 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 2378 116 48 22 chr9 56089522 56089877 -61772750 - THE1B LTR MaLR 0 364 1 2357 155 33 2 chr9 56090192 56090618 -61772009 + L1MA4 LINE L1 5857 6295 -5 360 0 0 0 chr9 56091222 56091262 -61771365 + (TG)n Simple_repeat Simple_repeat 2 41 0 214 252 37 93 chr9 56091372 56091479 -61771148 + MER5B DNA MER1_type 78 178 0 369 285 7 29 chr9 56091587 56091724 -61770903 + MIR SINE MIR 124 257 -5 30 83 0 0 chr9 56091740 56091812 -61770815 + AT_rich Low_complexity Low_complexity 1 72 0 240 302 104 61 chr9 56091866 56092095 -61770532 - MIR3 SINE MIR -13 249 13 195 100 0 0 chr9 56092796 56092826 -61769801 + (TC)n Simple_repeat Simple_repeat 1 30 0 207 273 0 0 chr9 56093199 56093243 -61769384 + polypurine Low_complexity Low_complexity 2 45 0 227 143 0 54 chr9 56094128 56094184 -61768443 + (TC)n Simple_repeat Simple_repeat 1 53 0 1948 202 5 14 chr9 56095571 56095938 -61766689 + MLT1A1 LTR MaLR 1 364 -1 277 281 116 33 chr9 56096859 56096980 -61765647 + MIR3 SINE MIR 42 172 -36 461 276 105 54 chr9 56097037 56097388 -61765239 + L2 LINE L2 1967 2335 -979 1190 297 89 17 chr9 56097437 56098012 -61764615 - MLT2F LTR ERVL -3 660 45 189 307 130 67 chr9 56098030 56098346 -61764281 + L2 LINE L2 2366 2701 -613 1897 113 0 25 chr9 56099429 56099703 -61762924 - AluSg SINE Alu -4 306 40 2243 151 91 15 chr9 56099769 56100167 -61762460 + MSTA LTR MaLR 1 428 0 272 261 54 54 chr9 56100585 56100696 -61761931 - MIR SINE MIR -47 215 105 204 135 0 0 chr9 56101302 56101339 -61761288 + (TC)n Simple_repeat Simple_repeat 1 37 0 395 239 35 92 chr9 56103238 56103380 -61759247 - L2 LINE L2 0 3272 3139 273 362 51 56 chr9 56103493 56103627 -61759000 - L2 LINE L2 -338 2976 2843 1714 181 70 43 chr9 56103627 56104026 -61758601 - MLT2D LTR ERVL 0 414 5 273 362 51 56 chr9 56104026 56104341 -61758286 - L2 LINE L2 -471 2843 2529 336 203 16 0 chr9 56104403 56104467 -61758160 - MER45 DNA AcHobo 0 1581 1517 1208 261 4 0 chr9 56104661 56104918 -61757709 - MER45C DNA AcHobo -690 263 6 382 323 117 31 chr9 56104946 56105203 -61757424 - L2 LINE L2 -830 2484 2206 218 350 83 32 chr9 56105408 56105565 -61757062 + MIR3 SINE MIR 4 168 -40 266 325 159 38 chr9 56106458 56106615 -61756012 - MIR3 SINE MIR -29 179 4 183 222 0 0 chr9 56107123 56107159 -61755468 + L2 LINE L2 3265 3300 -13 260 287 10 40 chr9 56107206 56107307 -61755320 - MIR3 SINE MIR -28 180 83 211 365 104 0 chr9 56107372 56107564 -61755063 - L2 LINE L2 -234 3038 2827 471 298 165 6 chr9 56107623 56107781 -61754846 - MER5A DNA MER1_type 0 189 7 252 227 99 18 chr9 56107827 56107959 -61754668 + MER5A DNA MER1_type 1 186 -3 519 253 19 49 chr9 56108736 56108898 -61753729 + MER5B DNA MER1_type 22 178 0 592 246 0 0 chr9 56109770 56109884 -61752743 + MER81 DNA DNA 1 114 0 355 309 195 0 chr9 56110425 56110574 -61752053 - MER5A DNA MER1_type -3 186 9 23 78 0 0 chr9 56110675 56110726 -61751901 + AT_rich Low_complexity Low_complexity 1 51 0 817 145 30 4 chr9 56110792 56111032 -61751595 + GA-rich Low_complexity Low_complexity 1 246 0 246 264 74 47 chr9 56112810 56112958 -61749669 - LTR16C LTR ERVL -57 434 283 1784 109 0 0 chr9 56113032 56113270 -61749357 - AluSg/x SINE Alu -9 303 66 250 273 231 7 chr9 56113296 56113439 -61749188 - LTR16C LTR ERVL -218 273 99 740 288 82 13 chr9 56113567 56113800 -61748827 - MIR SINE MIR -1 261 13 276 157 0 0 chr9 56114099 56114150 -61748477 - Alu SINE Alu -1 299 249 2274 95 0 0 chr9 56114507 56114802 -61747825 + AluSg SINE Alu 1 295 -15 295 333 0 0 chr9 56115631 56115715 -61746912 - L2 LINE L2 -1 3312 3229 402 321 104 28 chr9 56115959 56116171 -61746456 + MER115 DNA AcHobo 1 228 -465 602 294 55 40 chr9 56116227 56116502 -61746125 + MER115 DNA AcHobo 410 688 -5 216 306 0 24 chr9 56117599 56117684 -61744943 - MIR SINE MIR -10 252 170 505 300 75 79 chr9 56118538 56119005 -61743622 - L2 LINE L2 -4 3268 2804 375 307 21 7 chr9 56119266 56119406 -61743221 - LTR16C LTR ERVL -33 458 317 2194 132 8 81 chr9 56119833 56119991 -61742636 + MLT1A1 LTR MaLR 1 169 -196 2294 81 3 31 chr9 56119991 56120313 -61742314 + AluSp SINE Alu 1 313 0 2194 132 8 81 chr9 56120313 56120548 -61742079 + MLT1A1 LTR MaLR 169 365 0 27 0 0 0 chr9 56121071 56121098 -61741529 + AT_rich Low_complexity Low_complexity 1 27 0 316 336 22 0 chr9 56121138 56121286 -61741341 + MIR SINE MIR 13 146 -62 433 320 0 24 chr9 56121524 56121649 -61740978 + MIR SINE MIR 20 141 -67 294 266 69 34 chr9 56122440 56122586 -61740041 + MIR SINE MIR 16 154 -71 2474 38 7 0 chr9 56122596 56122885 -61739742 + AluY SINE Alu 1 291 -20 733 226 0 11 chr9 56122986 56123163 -61739464 + AluY SINE Alu 137 311 0 714 252 95 14 chr9 56123363 56123585 -61739042 + MIR SINE MIR 2 241 -21 1606 231 93 69 chr9 56125103 56125628 -61736999 + MLT1H LTR MaLR 1 538 -11 437 314 85 5 chr9 56126152 56126340 -61736287 - MIR SINE MIR -6 256 54 22 56 0 0 chr9 56126848 56126884 -61735743 + AT_rich Low_complexity Low_complexity 1 36 0 490 279 99 14 chr9 56127602 56127824 -61734803 + MIR SINE MIR 6 246 -16 271 289 10 31 chr9 56128138 56128235 -61734392 + Charlie7 DNA MER1_type 1 95 -2517 551 282 144 5 chr9 56128343 56128545 -61734082 + Charlie7 DNA MER1_type 64 293 -2319 3762 274 101 12 chr9 56128545 56129923 -61732704 - ERVL LTR ERVL -501 5263 3763 1338 234 163 115 chr9 56130017 56130538 -61732089 + MLT1E2 LTR MaLR 62 607 -47 1639 181 35 53 chr9 56130557 56130954 -61731673 - MLT1B LTR MaLR 0 390 1 1203 297 77 21 chr9 56130955 56131500 -61731127 - ERVL LTR ERVL -2113 3541 2963 475 275 45 45 chr9 56131899 56132077 -61730550 - MER91A DNA MER1_type 0 196 19 213 327 30 124 chr9 56133470 56133672 -61728955 - MER5A DNA MER1_type -1 188 6 345 273 224 0 chr9 56133800 56133961 -61728666 + MIR3 SINE MIR 9 205 -3 192 318 19 65 chr9 56134063 56134170 -61728457 + MIR SINE MIR 91 192 -70 2198 280 169 37 chr9 56134285 56134346 -61728281 - L2 LINE L2 -1454 1860 1808 2264 80 45 0 chr9 56134346 56134634 -61727993 + AluSc SINE Alu 1 301 -8 2198 280 169 37 chr9 56134634 56135835 -61726792 - L2 LINE L2 -1506 1808 431 310 279 39 39 chr9 56135838 56135992 -61726635 + Charlie8 DNA MER1_type 108 261 -2156 378 226 52 26 chr9 56136903 56137018 -61725609 + MER94 DNA DNA 1 118 -16 588 309 81 5 chr9 56139846 56140069 -61722558 - MIR SINE MIR -13 249 10 324 267 47 0 chr9 56141484 56141570 -61721057 - L1MC4 LINE L1 -1339 6703 6614 225 0 0 0 chr9 56141570 56141595 -61721032 + (GA)n Simple_repeat Simple_repeat 2 26 0 1960 134 4 4 chr9 56141596 56141873 -61720754 - AluSx SINE Alu -35 277 1 1713 171 0 20 chr9 56141882 56142175 -61720452 - AluJb SINE Alu -24 288 2 767 284 37 9 chr9 56142212 56142430 -61720197 - MIR SINE MIR -26 236 13 2410 81 3 0 chr9 56142554 56142852 -61719775 - AluSq SINE Alu -13 300 2 201 171 0 0 chr9 56142927 56142962 -61719665 + (TTA)n Simple_repeat Simple_repeat 1 35 0 1917 91 4 0 chr9 56142994 56143257 -61719370 - L1PA10 LINE L1 0 6168 5905 225 0 0 0 chr9 56143969 56143994 -61718633 + (A)n Simple_repeat Simple_repeat 1 25 0 237 279 44 0 chr9 56144251 56144319 -61718308 - MIR SINE MIR -162 100 30 388 309 98 41 chr9 56144648 56144771 -61717856 - L2 LINE L2 -1 3271 3142 924 292 130 17 chr9 56145146 56145501 -61717126 + L2 LINE L2 2504 2926 -387 2195 113 0 0 chr9 56145501 56145812 -61716815 + AluY SINE Alu 1 311 0 924 292 130 17 chr9 56145812 56145921 -61716706 + L2 LINE L2 2926 3021 -292 342 243 97 29 chr9 56146268 56146371 -61716256 + MIR SINE MIR 134 243 -19 372 190 25 0 chr9 56146408 56146487 -61716140 + FLAM_A SINE Alu 53 133 0 242 326 133 11 chr9 56146739 56146920 -61715707 - L2 LINE L2 -166 3106 2904 229 257 149 0 chr9 56147339 56147413 -61715214 - MER91B DNA MER1_type -5 185 101 329 274 51 26 chr9 56148536 56148653 -61713974 - MIR SINE MIR -66 196 77 4641 123 44 7 chr9 56149423 56150180 -61712447 + LTR1 LTR ERV1 1 785 0 849 203 5 10 chr9 56151152 56151349 -61711278 + MER96B DNA MER1_type? 40 235 -182 470 235 95 35 chr9 56151911 56152111 -61710516 - LTR50 LTR ERVL -569 226 15 195 305 53 61 chr9 56152280 56152411 -61710216 - L2 LINE L2 -491 2823 2694 365 363 64 17 chr9 56154336 56154570 -61708057 + MIR SINE MIR 18 262 0 346 309 93 12 chr9 56155116 56155278 -61707349 - L2 LINE L2 -4 3309 3135 669 281 96 38 chr9 56155581 56156061 -61706566 + L1ME4a LINE L1 5382 5889 -232 404 289 18 29 chr9 56156095 56156289 -61706338 + L1MC4a LINE L1 4188 4378 -1768 2110 121 51 31 chr9 56156289 56156645 -61705982 + THE1B LTR MaLR 2 364 0 404 289 18 29 chr9 56156645 56156792 -61705835 + L1MC4a LINE L1 4378 4525 -1621 349 326 63 0 chr9 56156827 56157017 -61705610 + L1MC4a LINE L1 4504 4705 -1441 416 314 53 27 chr9 56157036 56157687 -61704940 + L1MC4a LINE L1 4887 5558 -604 305 290 11 0 chr9 56157712 56157805 -61704822 + L1MC4a LINE L1 5789 5882 -1926 22 56 0 0 chr9 56157816 56157852 -61704775 + AT_rich Low_complexity Low_complexity 1 36 0 1579 163 13 57 chr9 56158030 56158207 -61704420 - AluJb SINE Alu -20 292 132 197 33 33 0 chr9 56158207 56158237 -61704390 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1579 163 13 57 chr9 56158237 56158360 -61704267 - AluJb SINE Alu -180 132 5 1983 187 77 10 chr9 56158565 56159056 -61703571 - L1MB2 LINE L1 -2 6169 5646 762 224 0 0 chr9 56159057 56159200 -61703427 + FRAM SINE Alu 1 140 -36 2723 197 32 54 chr9 56159218 56160234 -61702393 - L1MB2 LINE L1 -522 5661 4668 372 285 45 73 chr9 56160264 56160510 -61702117 - L1MEd LINE L1 -5180 939 701 445 309 155 69 chr9 56164639 56164960 -61697667 + L2 LINE L2 2406 2698 -615 2255 107 0 13 chr9 56164960 56165269 -61697358 + AluSg SINE Alu 1 305 -5 445 309 155 69 chr9 56165269 56165528 -61697099 + L2 LINE L2 2698 3053 -260 1973 136 169 5 chr9 56165537 56165905 -61696722 - MSTA LTR MaLR 0 428 1 491 291 173 16 chr9 56166034 56166347 -61696280 - L2 LINE L2 0 3313 2952 2123 136 0 7 chr9 56166391 56166700 -61695927 - AluSx SINE Alu -5 307 1 281 274 0 98 chr9 56166713 56166815 -61695812 + L2 LINE L2 3222 3313 0 432 277 76 17 chr9 56168429 56168592 -61694035 - MIR SINE MIR -51 211 40 577 307 122 27 chr9 56168819 56169304 -61693323 - L1ME4a LINE L1 -225 5896 5366 232 262 28 47 chr9 56169974 56170081 -61692546 - L1MB2 LINE L1 -1565 4581 4477 277 252 75 19 chr9 56170167 56170326 -61692301 - L1MB2 LINE L1 -1821 4325 4158 3399 188 68 14 chr9 56170838 56171626 -61691001 + L1PBa LINE L1 197 1027 -5836 * 15664 149 10 57 chr9 56171624 56172919 -61689708 - L1PA15-16 LINE L1 -4028 2821 1467 180 0 0 0 chr9 56172919 56172939 -61689688 + (TTA)n Simple_repeat Simple_repeat 2 21 0 15664 149 10 57 chr9 56172939 56174577 -61688050 - L1PA15-16 LINE L1 -5382 1467 26 352 283 128 26 chr9 56174591 56174817 -61687810 - L1MB2 LINE L1 -3594 2552 2304 496 148 23 0 chr9 56174837 56174925 -61687702 + MLT1C LTR MaLR 31 120 -347 2025 179 17 10 chr9 56174948 56175351 -61687276 + MLT1C LTR MaLR 62 467 0 437 313 26 5 chr9 56176138 56176330 -61686297 - HAL1b LINE L1 -790 558 363 310 256 58 64 chr9 56176440 56176596 -61686031 - L1MEd LINE L1 -4903 1216 1062 34 0 0 0 chr9 56176661 56176695 -61685932 + AT_rich Low_complexity Low_complexity 1 34 0 1221 209 91 62 chr9 56176872 56177017 -61685610 + LTR54B LTR ERV1 1 140 -358 2312 94 7 0 chr9 56177017 56177316 -61685311 + AluSx SINE Alu 1 301 -11 1221 209 91 62 chr9 56177316 56177652 -61684975 + LTR54B LTR ERV1 140 496 -2 456 292 84 34 chr9 56178319 56178497 -61684130 - MIR3 SINE MIR -6 202 16 255 267 13 13 chr9 56179037 56179112 -61683515 + (TATATG)n Simple_repeat Simple_repeat 2 76 0 2206 85 43 0 chr9 56179265 56179547 -61683080 + AluY SINE Alu 1 294 -17 2149 130 0 0 chr9 56179611 56179903 -61682724 + AluSx SINE Alu 13 304 -8 251 238 125 50 chr9 56180224 56180304 -61682323 - L2 LINE L2 -1 3271 3186 486 342 55 47 chr9 56180472 56180747 -61681880 + L1MEd LINE L1 85 361 -5758 1952 133 54 0 chr9 56181172 56181466 -61681161 - AluSx SINE Alu 0 312 3 307 267 105 0 chr9 56181466 56181571 -61681056 - L1MDa LINE L1 -3789 2751 2636 180 0 0 0 chr9 56181573 56181593 -61681034 + (TA)n Simple_repeat Simple_repeat 2 21 0 237 241 130 19 chr9 56181595 56181757 -61680870 - L1MDa LINE L1 -3919 2621 2442 182 316 32 21 chr9 56181993 56182088 -61680539 + L2 LINE L2 1275 1370 -1944 328 374 25 15 chr9 56182088 56182286 -61680341 - L1MDa LINE L1 -4573 2148 1949 634 307 55 6 chr9 56182513 56182875 -61679752 + L1ME2 LINE L1 5450 5829 -335 4003 282 126 34 chr9 56183333 56185331 -61677296 + L2 LINE L2 737 2919 -395 196 273 130 0 chr9 56185368 56185445 -61677182 + MIR SINE MIR 46 132 -130 1075 190 47 14 chr9 56185482 56185693 -61676934 + MER20 DNA MER1_type 1 218 -1 285 306 0 0 chr9 56185699 56185784 -61676843 + MIR SINE MIR 173 257 -5 438 339 68 13 chr9 56185827 56186063 -61676564 + L2 LINE L2 2903 3151 -162 198 71 0 0 chr9 56186063 56186091 -61676536 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 185 364 50 64 chr9 56186147 56186287 -61676340 + L2 LINE L2 3125 3262 -10 186 103 0 0 chr9 56187600 56187629 -61674998 + (TCC)n Simple_repeat Simple_repeat 2 30 0 370 210 10 70 chr9 56187710 56187810 -61674817 - L1ME3A LINE L1 -50 6120 6027 3482 102 2 0 chr9 56188099 56188587 -61674040 - L1PA10 LINE L1 -4 6164 5676 2648 232 36 8 chr9 56189020 56189654 -61672973 + MER82 DNA MER2_type 1 652 -1 911 191 16 21 chr9 56190722 56190911 -61671716 + AluJo SINE Alu 5 192 -120 198 0 0 0 chr9 56191074 56191096 -61671531 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 471 221 26 0 chr9 56191318 56191431 -61671196 + L1ME LINE L1 48 163 -5907 1819 233 60 47 chr9 56191441 56192161 -61670466 + L1ME LINE L1 270 998 -5072 845 319 96 10 chr9 56192175 56192573 -61670054 + MLT1J1 LTR MaLR 3 434 -12 1853 166 5 53 chr9 56192723 56192882 -61669745 + MLT1A1 LTR MaLR 5 170 -195 2162 135 0 0 chr9 56192882 56193193 -61669434 + AluSx SINE Alu 1 311 -1 1853 166 5 53 chr9 56193193 56193412 -61669215 + MLT1A1 LTR MaLR 170 365 0 197 136 0 45 chr9 56193567 56193611 -61669016 + (GAAA)n Simple_repeat Simple_repeat 2 43 0 959 193 45 5 chr9 56195016 56195218 -61667409 + MER6B DNA MER2_type 1 210 0 183 308 100 67 chr9 56195373 56195493 -61667134 + L2 LINE L2 3141 3264 -8 291 245 0 0 chr9 56196551 56196645 -61665982 + GA-rich Low_complexity Low_complexity 3 96 0 1514 168 86 0 chr9 56297914 56298182 -61564445 - AluSg SINE Alu -19 291 1 222 62 0 0 chr9 56298202 56298234 -61564393 + (TG)n Simple_repeat Simple_repeat 1 32 0 418 361 108 34 chr9 56298711 56299289 -61563338 + L2 LINE L2 2659 3293 -20 524 207 97 7 chr9 56299459 56299604 -61563023 + MER96B DNA MER1_type? 204 361 -56 509 272 139 0 chr9 56299673 56299853 -61562774 - MIR SINE MIR 0 262 58 2574 44 10 0 chr9 56300515 56300812 -61561815 - AluY SINE Alu -11 300 1 1593 171 24 17 chr9 56300909 56301201 -61561426 - AluJb SINE Alu -18 294 1 542 207 25 8 chr9 56301417 56301538 -61561089 - MER94 DNA DNA -11 123 1 1262 132 9 55 chr9 56303301 56303520 -61559107 - MER2 DNA MER2_type -136 209 1 2286 105 3 10 chr9 56303572 56303885 -61558742 - AluSp SINE Alu -2 311 1 432 145 0 13 chr9 56303957 56304033 -61558594 + L1MB8 LINE L1 6046 6120 -58 2222 92 3 0 chr9 56304034 56304340 -61558287 - AluSx SINE Alu 0 307 1 28 61 0 0 chr9 56305536 56305585 -61557042 + AT_rich Low_complexity Low_complexity 1 49 0 4790 105 2 3 chr9 56305907 56306544 -61556083 + L1PB2 LINE L1 5516 6151 0 249 254 32 0 chr9 56307441 56307504 -61555123 + (CATA)n Simple_repeat Simple_repeat 4 68 0 1277 209 39 29 chr9 56307595 56307902 -61554725 + AluJo SINE Alu 1 310 -2 241 276 23 23 chr9 56308338 56308425 -61554202 - MLT1K LTR MaLR -21 567 481 262 326 71 21 chr9 56308641 56308880 -61553747 - MLT1L LTR MaLR -360 255 5 516 301 88 27 chr9 56309802 56310064 -61552563 + L2 LINE L2 2669 2946 -368 2926 159 35 8 chr9 56310260 56310837 -61551790 - L1MA7 LINE L1 -252 6039 2926 2371 105 3 0 chr9 56310837 56311143 -61551484 - AluSx SINE Alu -5 307 1 225 133 0 44 chr9 56311183 56311228 -61551399 + L1ME4a LINE L1 5956 5998 -123 2170 112 10 7 chr9 56311653 56311958 -61550669 - AluSq SINE Alu -7 306 1 183 205 0 0 chr9 56312675 56312714 -61549913 + (TG)n Simple_repeat Simple_repeat 1 39 0 704 264 132 45 chr9 56313285 56313892 -61548735 + L1MC5 LINE L1 7270 7929 -32 330 206 0 0 chr9 56314609 56314682 -61547945 + (CA)n Simple_repeat Simple_repeat 2 74 0 1991 157 168 11 chr9 56314811 56315181 -61547446 + MSTA LTR MaLR 1 428 0 1156 116 0 6 chr9 56315181 56315354 -61547273 + MSTA-int LTR MaLR 1 172 -1479 1972 124 3 16 chr9 56315356 56315702 -61546925 - MER4A LTR ERV1 -4 660 261 730 78 20 10 chr9 56315699 56315801 -61546826 - MER4A LTR ERV1 -561 103 1 * 3991 127 117 56 chr9 56315801 56316571 -61546056 + MSTA-int LTR MaLR 168 984 -596 191 228 38 63 chr9 56316706 56316785 -61545842 + MIR SINE MIR 81 157 -105 510 17 0 0 chr9 56317210 56317269 -61545358 + (TA)n Simple_repeat Simple_repeat 2 60 0 279 0 0 0 chr9 56317268 56317299 -61545328 + (CA)n Simple_repeat Simple_repeat 2 32 0 * 775 229 17 0 chr9 56318347 56318526 -61544101 + L1PA16 LINE L1 5969 6150 -16 412 284 67 26 chr9 56319438 56319632 -61542995 - L1ME LINE L1 -305 5816 5615 2083 137 0 13 chr9 56319859 56320174 -61542453 - AluSx SINE Alu -1 311 1 281 229 16 0 chr9 56320968 56321029 -61541598 + MIR3 SINE MIR 132 193 -15 1815 143 86 0 chr9 56322003 56322282 -61540345 + AluJb SINE Alu 2 304 -8 289 271 62 91 chr9 56324842 56325216 -61537411 + L1MC4 LINE L1 7552 8032 -10 2202 151 25 25 chr9 56325481 56325845 -61536782 - THE1B LTR MaLR 0 364 1 572 263 80 40 chr9 56326056 56326280 -61536347 + MIR SINE MIR 2 234 -28 429 86 0 0 chr9 56326295 56326353 -61536274 - Alu SINE Alu -9 302 245 7469 78 13 3 chr9 56326455 56327462 -61535165 + L1P LINE L1 3127 4143 -2003 2388 55 12 21 chr9 56327454 56327782 -61534845 - L1P LINE L1 -1620 4526 4202 * 258 214 100 130 chr9 56328231 56328345 -61534282 + L1M4 LINE L1 4364 4480 -1666 2161 104 17 13 chr9 56328345 56328643 -61533984 + AluSq SINE Alu 1 299 -14 258 214 100 130 chr9 56328643 56328859 -61533768 + L1M4 LINE L1 4480 4684 -1462 252 323 0 24 chr9 56329305 56329429 -61533198 + GA-rich Low_complexity Low_complexity 4 124 0 225 276 0 0 chr9 56329859 56329917 -61532710 + (TTCA)n Simple_repeat Simple_repeat 1 58 0 354 250 60 0 chr9 56330165 56330249 -61532378 - HERVL40 LTR ERVL -504 5026 4938 397 232 56 24 chr9 56330444 56330569 -61532058 - LTR16C LTR ERVL 0 491 363 742 84 0 0 chr9 56330658 56330753 -61531874 + L1P LINE L1 4 98 -6048 * 21764 51 4 0 chr9 56330751 56333459 -61529168 + L1P LINE L1 623 3341 -2805 23 54 0 0 chr9 56334628 56334665 -61527962 + AT_rich Low_complexity Low_complexity 1 37 0 232 244 180 19 chr9 56334784 56334927 -61527700 - MIR3 SINE MIR -10 198 18 1023 89 7 0 chr9 56335985 56336120 -61526507 + AluSp SINE Alu 2 137 -176 326 283 67 17 chr9 56336960 56337080 -61525547 + MIR SINE MIR 134 259 -3 2231 112 0 0 chr9 56337730 56338026 -61524601 + AluSg SINE Alu 1 296 -14 278 335 97 13 chr9 56338375 56338530 -61524097 + MIR3 SINE MIR 37 204 -4 1902 146 17 0 chr9 56342079 56342374 -61520253 + AluSx SINE Alu 1 300 -12 2078 121 10 0 chr9 56342377 56342667 -61519960 + AluSq SINE Alu 1 293 -20 212 0 0 35 chr9 56342667 56342696 -61519931 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 352 342 30 56 chr9 56343351 56343585 -61519042 + MIR SINE MIR 20 247 -15 21 0 0 0 chr9 56346031 56346052 -61516575 + AT_rich Low_complexity Low_complexity 1 21 0 1485 66 0 10 chr9 56346060 56346258 -61516369 + L1PA5 LINE L1 5956 6151 -3 1052 157 4 116 chr9 56346983 56347225 -61515402 - AluJo SINE Alu -13 299 85 194 310 0 0 chr9 56347631 56347689 -61514938 + L2 LINE L2 2988 3045 -268 434 256 8 16 chr9 56347848 56347973 -61514654 + L2 LINE L2 3189 3312 -1 1295 212 4 29 chr9 56348006 56348284 -61514343 - AluJo SINE Alu -30 282 12 2119 107 3 14 chr9 56349067 56349358 -61513269 + AluY SINE Alu 1 288 -23 2368 89 0 16 chr9 56349611 56349925 -61512702 - AluSx SINE Alu -3 309 1 331 318 71 71 chr9 56350439 56350539 -61512088 + L2 LINE L2 2997 3096 -217 1818 173 13 3 chr9 56350539 56350840 -61511787 - AluJo SINE Alu -8 304 1 331 318 71 71 chr9 56350840 56351050 -61511577 + L2 LINE L2 3095 3307 -6 1022 101 6 30 chr9 56352199 56352368 -61510259 - L1PA13 LINE L1 -7 6156 5992 451 97 0 14 chr9 56353479 56353551 -61509076 - LTR67 LTR ERVL -2 555 485 205 253 209 11 chr9 56354090 56354181 -61508446 + MIR SINE MIR 98 206 -56 192 364 87 29 chr9 56354205 56354378 -61508249 + L3b LINE CR1 1247 1429 -154 329 317 83 49 chr9 56354424 56354629 -61507998 + L3b LINE CR1 1354 1565 -18 180 0 0 0 chr9 56354876 56354896 -61507731 + (T)n Simple_repeat Simple_repeat 1 20 0 2344 88 0 10 chr9 56355037 56355343 -61507284 - AluSp SINE Alu -5 308 6 1703 221 50 63 chr9 56355923 56356169 -61506458 - L1ME3A LINE L1 -123 6047 5799 1000 206 20 0 chr9 56356169 56356373 -61506254 + MER3 DNA MER1_type 2 209 0 1703 221 50 63 chr9 56356373 56356729 -61505898 - L1ME3A LINE L1 -371 5799 5453 535 152 161 9 chr9 56356745 56356857 -61505770 - FLAM_C SINE Alu -12 131 3 637 232 58 0 chr9 56356859 56357094 -61505533 - L1ME3A LINE L1 -687 5483 5236 3545 196 62 16 chr9 56357243 56358092 -61504535 + L1MC3 LINE L1 6873 7760 -25 2321 54 20 0 chr9 56358112 56358410 -61504217 - L1PA7 LINE L1 -4 6150 5847 451 230 15 44 chr9 56359624 56359759 -61502868 + MLT1K LTR MaLR 455 585 -3 403 236 174 7 chr9 56360338 56360482 -61502145 - MIR SINE MIR -48 214 47 21 0 0 0 chr9 56360596 56360617 -61502010 + AT_rich Low_complexity Low_complexity 1 21 0 316 214 0 97 chr9 56361333 56361436 -61501191 + MIR3 SINE MIR 85 177 -31 1970 140 0 13 chr9 56363278 56363585 -61499042 + AluSx SINE Alu 1 303 -9 254 327 111 13 chr9 56363691 56363844 -61498783 - MIR3 SINE MIR 0 208 41 481 304 76 37 chr9 56365163 56365294 -61497333 - L1ME4a LINE L1 -42 6079 5955 401 54 18 0 chr9 56365294 56365350 -61497277 + (TG)n Simple_repeat Simple_repeat 2 58 0 481 304 76 37 chr9 56365350 56365678 -61496949 - L1ME4a LINE L1 -166 5955 5602 2495 65 0 0 chr9 56365695 56365988 -61496639 + AluY SINE Alu 1 293 -18 222 113 90 0 chr9 56366190 56366323 -61496304 + (TA)n Simple_repeat Simple_repeat 1 145 0 302 281 162 0 chr9 56366488 56366612 -61496015 + MIR SINE MIR 37 182 -26 3703 131 31 7 chr9 56366933 56367553 -61495074 - MER41B LTR ERV1 0 635 1 22 0 0 0 chr9 56368533 56368555 -61494072 + AT_rich Low_complexity Low_complexity 1 22 0 406 186 176 39 chr9 56369666 56369768 -61492859 - FLAM_C SINE Alu -17 116 1 2343 69 3 3 chr9 56369899 56370188 -61492439 - AluSp SINE Alu -24 289 1 500 213 165 49 chr9 56370444 56370608 -61492019 - MER5A DNA MER1_type 0 189 7 474 154 0 0 chr9 56370674 56370752 -61491875 - AluJ/FRAM SINE Alu -15 297 220 271 270 183 0 chr9 56370752 56370889 -61491738 - LTR16C LTR ERVL -261 230 69 2010 141 7 3 chr9 56371128 56371433 -61491194 - AluSx SINE Alu -6 306 1 22 0 0 0 chr9 56372621 56372643 -61489984 + AT_rich Low_complexity Low_complexity 1 22 0 2090 123 3 23 chr9 56373541 56373851 -61488776 - AluSx SINE Alu -8 304 1 377 259 0 0 chr9 56375231 56375316 -61487311 + L2 LINE L2 3179 3263 -9 413 280 110 25 chr9 56375719 56375919 -61486708 + MIR SINE MIR 46 262 0 2369 103 0 0 chr9 56376146 56376456 -61486171 - AluSg SINE Alu 0 310 1 1549 149 80 18 chr9 56377077 56377353 -61485274 + AluJo SINE Alu 1 293 -19 575 283 103 30 chr9 56377531 56377764 -61484863 + MIR SINE MIR 3 252 -10 2563 253 51 11 chr9 56477917 56478622 -61384005 - L1M2c LINE L1 -4895 1894 1162 1685 245 25 113 chr9 56478695 56479439 -61383188 - L1M2c LINE L1 -6103 686 8 234 256 141 13 chr9 56479548 56479626 -61383001 - L2 LINE L2 -1009 2305 2218 313 348 29 22 chr9 56479910 56480048 -61382579 + MIR SINE MIR 25 163 -99 241 200 36 82 chr9 56480611 56480721 -61381906 - MLT1L LTR MaLR -2 613 509 271 369 21 27 chr9 56480906 56481093 -61381534 - MLT1K LTR MaLR -310 278 93 202 0 29 57 chr9 56483959 56483994 -61378633 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 2565 205 34 9 chr9 56485497 56486023 -61376604 - MLT1F1 LTR MaLR -26 541 3 2623 211 6 0 chr9 56486351 56486900 -61375727 - L1PA16 LINE L1 -1867 4279 3728 5662 163 14 7 chr9 56486904 56488766 -61373861 + L1PA16 LINE L1 4282 6153 -13 315 200 200 22 chr9 56489181 56489361 -61373266 - HsTC2 DNA Tc2 0 1898 1687 274 261 81 72 chr9 56489330 56489441 -61373186 - HsTC2 DNA Tc2 -322 1576 1289 * 2171 110 0 0 chr9 56489457 56489748 -61372879 - AluSq SINE Alu -22 291 1 1875 257 113 21 chr9 56489776 56490429 -61372198 - HsTC2 DNA Tc2 -1182 716 4 42144 35 24 2 chr9 56490809 56496814 -61365813 + L1PA3 LINE L1 14 6155 0 593 303 87 36 chr9 56497022 56497630 -61364997 + L1ME4a LINE L1 5265 5903 -218 2212 113 0 3 chr9 56500474 56500774 -61361853 + AluSx SINE Alu 13 311 -1 272 248 66 8 chr9 56500879 56501000 -61361627 - L1ME4a LINE L1 -2 6119 5992 * 9756 191 61 30 chr9 56500997 56501286 -61361341 - L1MC3 LINE L1 -2 8201 7923 2209 112 0 10 chr9 56501286 56501598 -61361029 - AluSx SINE Alu -3 309 1 9756 191 61 30 chr9 56501598 56502796 -61359831 - L1MC3 LINE L1 -280 7923 6609 288 0 0 0 chr9 56502796 56502828 -61359799 + (CA)n Simple_repeat Simple_repeat 2 33 0 9756 191 61 30 chr9 56502828 56503707 -61358920 - L1MC3 LINE L1 -1594 6609 5759 4459 196 43 19 chr9 56503742 56504877 -61357750 - L1MC3 LINE L1 -1463 5101 3940 594 288 81 4 chr9 56504878 56505114 -61357513 - L1M4 LINE L1 -1150 4996 4743 560 212 80 0 chr9 56505134 56505271 -61357356 - L1M4 LINE L1 -1838 4308 4161 3731 258 36 22 chr9 56505273 56505829 -61356798 - L1MC3 LINE L1 -4936 1109 562 207 0 0 0 chr9 56505829 56505852 -61356775 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 3731 258 36 22 chr9 56505852 56506389 -61356238 - L1MC3 LINE L1 -5483 562 1 304 320 80 25 chr9 56506408 56506608 -61356019 - L1ME4a LINE L1 -116 6005 5795 903 215 99 75 chr9 56506617 56507073 -61355554 + LTR37B LTR ERV1 1 467 -1 2903 64 3 10 chr9 56507187 56507575 -61355052 - L1PA13 LINE L1 -2 6161 5777 604 303 128 71 chr9 56507997 56508924 -61353703 - L1ME4a LINE L1 -775 5371 4392 450 321 18 30 chr9 56509195 56509363 -61353264 + MER5B DNA MER1_type 12 177 -1 26 50 0 0 chr9 56509367 56509407 -61353220 + AT_rich Low_complexity Low_complexity 1 40 0 189 288 104 80 chr9 56509528 56509653 -61352974 + MIR3 SINE MIR 43 170 -38 249 277 15 0 chr9 56509804 56509869 -61352758 - Charlie8 DNA MER1_type -1002 1415 1350 2071 150 8 42 chr9 56509879 56510116 -61352511 + MER47A DNA MER2_type 1 222 -2101 2123 114 3 13 chr9 56510116 56510423 -61352204 - AluSq SINE Alu -9 304 1 2071 150 8 42 chr9 56510423 56510564 -61352063 + MER47A DNA MER2_type 222 366 0 280 294 54 0 chr9 56510631 56510723 -61351904 + Charlie7 DNA MER1_type 1 97 -2515 21 0 0 0 chr9 56510744 56510765 -61351862 + AT_rich Low_complexity Low_complexity 1 21 0 364 314 25 8 chr9 56510856 56510977 -61351650 + MIR SINE MIR 79 201 -61 1355 159 66 3 chr9 56512532 56512833 -61349794 + MER33 DNA MER1_type 2 321 -3 2775 165 6 0 chr9 56513891 56514363 -61348264 + L1MB2 LINE L1 5690 6164 -7 245 229 102 68 chr9 56514492 56514610 -61348017 - MIR3 SINE MIR -11 197 76 2098 231 16 22 chr9 56515509 56516011 -61346616 + MER119 DNA MER1_type 31 529 -54 2062 122 14 0 chr9 56517401 56517680 -61344947 - AluSx SINE Alu -17 295 13 320 364 26 0 chr9 56517768 56517922 -61344705 + MIR SINE MIR 32 189 -73 585 218 0 0 chr9 56519057 56519167 -61343460 - MER81 DNA DNA -4 110 1 2513 64 0 0 chr9 56519309 56519620 -61343007 + AluY SINE Alu 1 311 0 27 29 0 0 chr9 56519936 56519970 -61342657 + AT_rich Low_complexity Low_complexity 1 34 0 326 276 73 99 chr9 56520317 56520589 -61342038 - L2 LINE L2 -1 3312 3048 444 254 88 95 chr9 56521737 56522021 -61340606 - MLT1I LTR MaLR 0 409 128 22 35 0 0 chr9 56523495 56523524 -61339103 + AT_rich Low_complexity Low_complexity 1 29 0 321 316 69 1 chr9 56524319 56524499 -61338128 + MIR SINE MIR 16 204 -52 1880 57 0 8 chr9 56525070 56525315 -61337312 + L1PA8 LINE L1 5924 6166 -6 688 130 0 0 chr9 56526336 56526436 -61336191 - LTR12 LTR ERV1 0 714 615 273 238 12 0 chr9 56526439 56526523 -61336104 - LTR30 LTR ERV1 -80 642 558 1295 126 112 5 chr9 56526523 56526738 -61335889 - LTR12 LTR ERV1 -424 290 53 252 231 0 0 chr9 56526738 56526790 -61335837 - LTR30 LTR ERV1 -670 52 1 299 167 0 42 chr9 56527680 56527693 -61334934 + (TA)n Simple_repeat Simple_repeat 1 13 -56 1583 187 17 3 chr9 56527693 56527982 -61334645 + AluJb SINE Alu 1 293 -19 299 167 0 42 chr9 56527982 56528040 -61334587 + (TA)n Simple_repeat Simple_repeat 13 69 0 23 33 0 0 chr9 56528128 56528158 -61334469 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr9 56528179 56528200 -61334427 + AT_rich Low_complexity Low_complexity 1 21 0 457 265 29 6 chr9 56528280 56528450 -61334177 + L1ME4a LINE L1 5946 6119 -2 1495 222 93 0 chr9 56530883 56531248 -61331379 - MER63 DNA MER1_type 0 1060 662 182 258 113 0 chr9 56531261 56531323 -61331304 - MIR SINE MIR -94 168 100 423 0 0 0 chr9 56532198 56532245 -61330382 + (TG)n Simple_repeat Simple_repeat 2 48 0 185 237 145 13 chr9 56533406 56533482 -61329145 + MIR SINE MIR 64 149 -59 1496 207 7 0 chr9 56534626 56534773 -61327854 - AluJo SINE Alu -30 282 131 243 0 0 0 chr9 56534773 56534800 -61327827 + (TTTTA)n Simple_repeat Simple_repeat 3 29 0 1496 207 7 0 chr9 56534800 56534932 -61327695 - AluJo SINE Alu -181 131 1 22 0 0 0 chr9 56534983 56535005 -61327622 + AT_rich Low_complexity Low_complexity 1 22 0 239 278 151 35 chr9 56535012 56535296 -61327331 - L1ME4a LINE L1 -40 6081 5765 241 257 124 26 chr9 56535375 56535488 -61327139 + MER103 DNA DNA 42 165 -1 226 276 17 0 chr9 56536136 56536194 -61326433 + L2 LINE L2 3214 3272 0 263 278 113 22 chr9 56536402 56536575 -61326052 + MIR SINE MIR 26 220 -42 2244 115 0 3 chr9 56537379 56537683 -61324944 - AluSg SINE Alu -7 303 1 1647 172 57 37 chr9 56537692 56538099 -61324528 - L1MA10 LINE L1 -1 6333 5919 698 168 32 5 chr9 56538112 56538332 -61324295 + CT-rich Low_complexity Low_complexity 1 226 0 933 150 171 0 chr9 56538622 56538809 -61323818 + MER20 DNA MER1_type 1 219 0 348 326 152 37 chr9 56539500 56539908 -61322719 + MLT1K LTR MaLR 66 520 -68 436 342 77 0 chr9 56540342 56540538 -61322089 - MIR SINE MIR -44 218 8 233 305 37 0 chr9 56540774 56540856 -61321771 + MIR3 SINE MIR 75 159 -49 200 204 23 0 chr9 56540875 56540919 -61321708 - L2 LINE L2 -18 3254 3210 337 321 93 7 chr9 56542039 56542179 -61320448 + MIR SINE MIR 67 218 -44 257 347 50 5 chr9 56542203 56542340 -61320287 - MIR SINE MIR -68 140 15 286 238 83 12 chr9 56543449 56543533 -61319094 - MIR SINE MIR -108 154 65 201 265 10 102 chr9 56543600 56543698 -61318929 + MIR SINE MIR 124 212 -50 1845 168 52 73 chr9 56543809 56544250 -61318377 + MSTB1 LTR MaLR 1 432 0 1573 178 48 6 chr9 56544315 56544629 -61317998 - MER58B DNA MER1_type -2 339 13 601 281 63 51 chr9 56544736 56545288 -61317339 - MLT1L LTR MaLR -6 609 5 201 132 0 0 chr9 56546346 56546384 -61316243 + (T)n Simple_repeat Simple_repeat 1 38 0 41118 33 21 2 chr9 56546384 56552417 -61310210 - L1PA3 LINE L1 0 6155 4 284 258 24 48 chr9 56552725 56552849 -61309778 + MER117 DNA MER1_type 1 121 -76 324 209 0 0 chr9 56553322 56553413 -61309214 + (CA)n Simple_repeat Simple_repeat 2 92 0 1035 154 77 34 chr9 56554339 56554547 -61308080 + MER20 DNA MER1_type 3 219 0 382 215 11 0 chr9 56554807 56554900 -61307727 + MER53 DNA DNA 2 95 -94 344 204 11 0 chr9 56554828 56554916 -61307711 - MER53 DNA DNA -12 177 89 * 563 150 34 48 chr9 56554942 56555089 -61307538 + MER53 DNA DNA 45 189 0 205 278 0 0 chr9 56555242 56555296 -61307331 + L2 LINE L2 3254 3307 -6 832 294 105 25 chr9 56555452 56555853 -61306774 - MLT1J LTR MaLR -57 454 22 199 285 122 57 chr9 56556150 56556273 -61306354 + L2 LINE L2 3182 3312 -1 21 0 0 0 chr9 56557656 56557677 -61304950 + AT_rich Low_complexity Low_complexity 1 21 0 2117 110 0 0 chr9 56558767 56559085 -61303542 - AluSx SINE Alu 0 318 1 487 287 28 79 chr9 56559430 56559646 -61302981 - MIR SINE MIR -56 206 2 225 281 53 0 chr9 56560432 56560489 -61302138 + L2 LINE L2 3250 3309 -4 21 0 0 0 chr9 56561098 56561119 -61301508 + AT_rich Low_complexity Low_complexity 1 21 0 1379 266 131 51 chr9 56561119 56561606 -61301021 - L1ME3A LINE L1 -26 6144 5698 1539 163 119 31 chr9 56561606 56561691 -61300936 + MER7A DNA MER2_type 1 77 -2961 2338 78 7 3 chr9 56561691 56561985 -61300642 + AluY SINE Alu 1 295 -16 1539 163 119 31 chr9 56561985 56562219 -61300408 + MER7A DNA MER2_type 77 346 0 1379 266 131 51 chr9 56562219 56563980 -61298647 - L1ME3A LINE L1 -472 5698 3706 274 73 0 24 chr9 56564407 56564448 -61298179 - tRNA-Arg-AGA tRNA tRNA -36 40 1 230 343 130 22 chr9 56564480 56564718 -61297909 + L2 LINE L2 2883 3272 0 2276 99 14 0 chr9 56564785 56565079 -61297548 + AluSx SINE Alu 1 298 -14 2114 154 40 24 chr9 56565493 56565914 -61296713 - MSTA LTR MaLR 0 428 1 1821 197 65 43 chr9 56566012 56566322 -61296305 + Charlie1b DNA MER1_type 1 328 -2433 2355 91 3 0 chr9 56566322 56566620 -61296007 + AluSp SINE Alu 1 299 -14 1821 197 65 43 chr9 56566620 56566821 -61295806 + Charlie1b DNA MER1_type 328 523 0 1943 149 0 28 chr9 56567961 56568282 -61294345 + AluJb SINE Alu 1 312 0 225 0 0 0 chr9 56568723 56568748 -61293879 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 2052 63 0 0 chr9 56569243 56569495 -61293132 + AluY SINE Alu 1 252 -59 4094 205 78 82 chr9 56570318 56571453 -61291174 + L1MC4 LINE L1 6462 7591 -451 2546 50 3 3 chr9 56571453 56571753 -61290874 + AluY SINE Alu 2 301 -10 4094 205 78 82 chr9 56571753 56572204 -61290423 + L1MC4 LINE L1 7591 8042 0 2364 179 22 76 chr9 56573004 56573586 -61289041 - MLT2B3 LTR ERVL -3 551 1 265 264 14 0 chr9 56573708 56573780 -61288847 + (ATG)n Simple_repeat Simple_repeat 3 75 0 672 299 47 14 chr9 56573821 56574035 -61288592 - MIR SINE MIR -7 255 35 509 241 110 66 chr9 56575169 56575397 -61287230 - L2 LINE L2 0 3313 3076 283 376 45 19 chr9 56575632 56575789 -61286838 - MIR3 SINE MIR -3 205 45 294 29 0 0 chr9 56575942 56575977 -61286650 + (TG)n Simple_repeat Simple_repeat 2 36 0 331 235 34 42 chr9 56576508 56576627 -61286000 - MLT1L LTR MaLR -356 259 142 403 254 116 12 chr9 56576644 56576817 -61285810 - L1MC/D LINE L1 -1987 5821 5631 186 300 86 0 chr9 56577972 56578042 -61284585 + MIR SINE MIR 89 164 -98 1778 204 26 11 chr9 56578483 56578865 -61283762 + MSTD LTR MaLR 1 388 -8 273 331 54 43 chr9 56578873 56579057 -61283570 - L2 LINE L2 -470 2844 2659 2298 106 0 16 chr9 56579426 56579738 -61282889 + AluSc SINE Alu 3 309 0 747 204 111 12 chr9 56579805 56579967 -61282660 - MER5A DNA MER1_type -8 181 4 182 290 23 107 chr9 56580013 56580049 -61282578 - MIR SINE MIR -123 139 102 2569 62 0 0 chr9 56580049 56580357 -61282270 + AluY SINE Alu 1 308 -3 182 290 23 107 chr9 56580357 56580451 -61282176 - MIR SINE MIR -160 102 20 216 94 0 94 chr9 56581010 56581063 -61281564 + (CAAAAA)n Simple_repeat Simple_repeat 3 50 0 1202 225 4 0 chr9 56581582 56581840 -61280787 - AluJb SINE Alu -5 307 49 297 292 22 0 chr9 56581957 56582046 -61280581 + CT-rich Low_complexity Low_complexity 6 96 0 979 120 44 16 chr9 56582204 56582387 -61280240 + MER53 DNA DNA 2 189 0 354 198 117 68 chr9 56582540 56582702 -61279925 + L1MC4 LINE L1 6459 6628 -1414 61 15 0 0 chr9 56582833 56582901 -61279726 + AT_rich Low_complexity Low_complexity 1 68 0 299 347 16 32 chr9 56583131 56583255 -61279372 + MIR SINE MIR 2 123 -139 431 232 51 57 chr9 56583279 56583456 -61279171 - MER104 DNA MER2_type -3 177 2 1654 134 50 0 chr9 56583745 56584006 -61278621 + AluJb SINE Alu 9 282 -30 675 194 0 8 chr9 56584323 56584447 -61278180 + FLAM_A SINE Alu 1 123 -10 2175 86 0 80 chr9 56584454 56584778 -61277849 + AluY SINE Alu 1 298 -13 27 29 0 0 chr9 56584779 56584813 -61277814 + AT_rich Low_complexity Low_complexity 1 34 0 282 191 262 0 chr9 56585017 56585101 -61277526 + MIR SINE MIR 157 262 0 442 240 77 0 chr9 56585929 56586033 -61276594 + L2 LINE L2 3201 3312 -1 1900 152 10 13 chr9 56586091 56586400 -61276227 + AluJb SINE Alu 1 308 -4 305 192 33 187 chr9 56586484 56586666 -61275961 + MIR3 SINE MIR 44 197 -11 795 251 23 75 chr9 56586766 56587113 -61275514 + MLT1J1 LTR MaLR 1 329 -117 2168 232 29 22 chr9 56587132 56587168 -61275459 + LTR40a LTR ERVL 3 37 -482 191 36 36 0 chr9 56587168 56587196 -61275431 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2168 232 29 22 chr9 56587196 56587723 -61274904 + LTR40a LTR ERVL 37 519 0 1809 195 16 65 chr9 56587957 56588341 -61274286 + MLT1A1 LTR MaLR 1 365 0 454 179 34 34 chr9 56588425 56588542 -61274085 - MER103 DNA DNA -43 123 7 525 252 168 7 chr9 56588697 56588852 -61273775 - MER5A DNA MER1_type 0 189 10 1470 210 34 3 chr9 56588967 56589258 -61273369 - AluJo SINE Alu -12 300 1 2753 107 8 8 chr9 56589580 56589944 -61272683 + THE1B LTR MaLR 1 364 0 454 231 164 73 chr9 56590818 56591243 -61271384 - LTR33 LTR ERVL -15 506 24 7110 68 27 1 chr9 56591567 56592496 -61270131 + L1PA8 LINE L1 5206 6157 -15 24 32 0 0 chr9 56592554 56592585 -61270042 + AT_rich Low_complexity Low_complexity 1 31 0 201 152 0 0 chr9 56592660 56592693 -61269934 + (ATG)n Simple_repeat Simple_repeat 3 35 0 333 313 67 27 chr9 56592734 56592884 -61269743 - MIR SINE MIR -92 170 15 25 31 0 0 chr9 56593456 56593488 -61269139 + AT_rich Low_complexity Low_complexity 1 32 0 945 278 77 89 chr9 56594014 56594608 -61268019 + MLT1K LTR MaLR 2 588 0 511 325 123 15 chr9 56595318 56595521 -61267106 + MIR SINE MIR 32 256 -6 1026 190 11 17 chr9 56595750 56595929 -61266698 - MER5B DNA MER1_type 0 178 1 37125 33 0 3 chr9 56596366 56601571 -61261056 + L1PA4 LINE L1 965 6155 0 1670 213 125 42 chr9 56602465 56602920 -61259707 + MLT1H LTR MaLR 68 555 0 719 239 25 0 chr9 56604315 56604478 -61258149 + MER117 DNA MER1_type 30 196 -1 2774 154 15 20 chr9 56605103 56605558 -61257069 + LTR32 LTR ERVL 19 471 0 217 244 0 0 chr9 56606099 56606144 -61256483 + L2 LINE L2 3266 3310 -3 236 229 0 33 chr9 56606416 56606477 -61256150 - MLT1L LTR MaLR -551 64 6 2485 179 65 2 chr9 56606536 56606966 -61255661 + MSTB2 LTR MaLR 1 457 0 367 207 64 133 chr9 56608916 56609104 -61253523 - MER104 DNA MER2_type -1 179 5 2129 123 0 3 chr9 56609343 56609635 -61252992 - AluSq SINE Alu -22 291 1 22 0 0 0 chr9 56610799 56610821 -61251806 + AT_rich Low_complexity Low_complexity 1 22 0 240 35 0 0 chr9 56610934 56610963 -61251664 + (TG)n Simple_repeat Simple_repeat 2 30 0 309 51 0 0 chr9 56612426 56612465 -61250162 + (TG)n Simple_repeat Simple_repeat 2 40 0 2385 91 0 0 chr9 56613675 56613973 -61248654 - AluY SINE Alu -13 298 1 1962 147 17 0 chr9 56615370 56615669 -61246958 + AluSx SINE Alu 1 304 -8 301 286 39 29 chr9 56615697 56615816 -61246811 + MIR SINE MIR 36 154 -62 196 318 101 54 chr9 56616480 56616609 -61246018 - MIR3 SINE MIR -29 179 45 1794 171 0 7 chr9 56616633 56616937 -61245690 + AluJb SINE Alu 1 302 -10 466 243 29 0 chr9 56617478 56617595 -61245032 + MIR SINE MIR 36 154 -62 220 286 48 88 chr9 56618856 56619003 -61243624 + L2 LINE L2 2715 2855 -459 451 323 122 13 chr9 56619073 56619302 -61243325 + L2 LINE L2 2953 3206 -66 2133 194 190 63 chr9 56619304 56619983 -61242644 - LTR41 LTR ERVL -7 766 2 220 136 45 0 chr9 56620006 56620050 -61242577 + L2 LINE L2 3268 3313 0 378 219 26 119 chr9 56620722 56620873 -61241754 - L2 LINE L2 0 3313 3177 289 173 107 0 chr9 56621061 56621136 -61241491 - MER33 DNA MER1_type 0 363 281 2680 48 0 3 chr9 56621136 56621446 -61241181 + AluSp SINE Alu 1 309 -4 542 246 0 8 chr9 56621446 56621576 -61241051 + FLAM_A SINE Alu 14 142 0 521 216 117 5 chr9 56621576 56621783 -61240844 - MER33 DNA MER1_type -93 270 1 207 69 0 0 chr9 56623198 56623227 -61239400 + (CCA)n Simple_repeat Simple_repeat 2 30 0 22 35 0 0 chr9 56624302 56624331 -61238296 + GC_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr9 56624678 56624706 -61237921 + GC_rich Low_complexity Low_complexity 1 28 0 33 43 0 0 chr9 56625056 56625103 -61237524 + GC_rich Low_complexity Low_complexity 1 47 0 27 29 0 0 chr9 56628195 56628229 -61234398 + AT_rich Low_complexity Low_complexity 1 34 0 324 164 0 0 chr9 56628768 56628835 -61233792 + (TA)n Simple_repeat Simple_repeat 1 67 0 232 181 42 0 chr9 56631460 56631532 -61231095 + (TATG)n Simple_repeat Simple_repeat 2 76 0 228 313 145 28 chr9 56633370 56633549 -61229078 - MIR SINE MIR -10 252 53 189 0 0 0 chr9 56635466 56635487 -61227140 + (TTA)n Simple_repeat Simple_repeat 2 22 0 196 241 69 0 chr9 56635792 56635850 -61226777 - MIR SINE MIR -62 146 85 228 297 55 33 chr9 56635908 56635999 -61226628 - MIR3 SINE MIR -111 97 5 599 235 27 66 chr9 56636289 56636472 -61226155 + L2 LINE L2 3138 3313 0 484 291 20 20 chr9 56637053 56637201 -61225426 - MIR SINE MIR -71 191 44 307 333 76 0 chr9 56637294 56637438 -61225189 + MIR3 SINE MIR 31 185 -23 22 56 0 0 chr9 56637592 56637628 -61224999 + AT_rich Low_complexity Low_complexity 1 36 0 2061 119 31 0 chr9 56637928 56638221 -61224406 + AluSc SINE Alu 1 302 -7 1574 136 19 15 chr9 56638650 56638915 -61223712 - L1MA3 LINE L1 0 6305 6040 365 133 173 13 chr9 56638928 56639003 -61223624 + L2 LINE L2 3227 3313 0 190 371 16 0 chr9 56639136 56639198 -61223429 + MIR3 SINE MIR 12 74 -134 751 304 35 13 chr9 56639679 56639906 -61222721 - MIR SINE MIR -10 252 21 258 32 0 0 chr9 56639969 56640000 -61222627 + (TG)n Simple_repeat Simple_repeat 2 32 0 2101 98 0 11 chr9 56640000 56640285 -61222342 - AluSc SINE Alu -27 282 1 865 217 58 0 chr9 56640773 56640980 -61221647 + MER20 DNA MER1_type 1 219 0 214 329 196 0 chr9 56641411 56641569 -61221058 - L3 LINE CR1 -210 1367 1179 203 309 144 0 chr9 56642860 56642957 -61219670 - L2 LINE L2 0 3313 3203 197 317 28 49 chr9 56643038 56643180 -61219447 - L2 LINE L2 -189 3083 2945 227 269 154 0 chr9 56643359 56643437 -61219190 + L2 LINE L2 3174 3263 -9 208 178 0 22 chr9 56643697 56643742 -61218885 + GA-rich Low_complexity Low_complexity 4 47 0 1771 156 3 26 chr9 56643929 56644419 -61218208 - AluJb SINE Alu 0 483 1 436 245 39 0 chr9 56645765 56645867 -61216760 + MIR3 SINE MIR 55 160 -48 358 169 14 28 chr9 56645907 56645978 -61216649 + MER5B DNA MER1_type 106 175 -3 484 144 30 23 chr9 56646031 56646139 -61216488 - MER5A DNA MER1_type -77 112 4 191 86 0 29 chr9 56646327 56646362 -61216265 + (TTTTTG)n Simple_repeat Simple_repeat 1 34 0 285 260 0 13 chr9 56647120 56647197 -61215430 + MER5C DNA MER1_type 1 76 -248 2433 61 7 0 chr9 56647686 56647982 -61214645 - AluY SINE Alu -13 298 1 496 296 153 40 chr9 56649230 56649609 -61213018 + L2 LINE L2 2144 2565 -749 360 254 268 14 chr9 56649603 56649745 -61212882 + MIR SINE MIR 77 254 -8 * 2235 89 0 52 chr9 56649787 56650112 -61212515 + AluY SINE Alu 1 308 -3 201 186 0 23 chr9 56650114 56650157 -61212470 + L2 LINE L2 2602 2643 -671 206 344 176 24 chr9 56650387 56650512 -61212115 + L2 LINE L2 3099 3242 -30 181 217 126 105 chr9 56650649 56650792 -61211835 + L2 LINE L2 3160 3305 -8 236 267 44 22 chr9 56651032 56651122 -61211505 + L2 LINE L2 2764 2855 -459 719 253 17 0 chr9 56651155 56651329 -61211298 - MER5B DNA MER1_type -1 177 1 317 313 0 8 chr9 56651386 56651514 -61211113 - MER103 DNA DNA -1 165 39 755 238 34 45 chr9 56651642 56651907 -61210720 + L2 LINE L2 3045 3306 -7 22 35 0 0 chr9 56652930 56652959 -61209668 + AT_rich Low_complexity Low_complexity 1 29 0 14212 118 53 19 chr9 56653205 56655543 -61207084 + Tigger1 DNA MER2_type 1 2418 0 236 214 326 11 chr9 56655616 56655705 -61206922 - L2 LINE L2 -4 3309 3193 349 280 318 0 chr9 56655725 56655857 -61206770 + MER5A DNA MER1_type 15 188 -1 509 295 84 8 chr9 56655871 56656122 -61206505 - L2 LINE L2 -140 3173 2904 198 167 0 0 chr9 56656844 56656880 -61205747 + GA-rich Low_complexity Low_complexity 2 37 0 342 0 0 0 chr9 56658024 56658062 -61204565 + (T)n Simple_repeat Simple_repeat 1 38 0 7051 51 0 33 chr9 56658210 56659771 -61202856 - L1PA6 LINE L1 0 6154 4619 1393 44 33 0 chr9 56659771 56659953 -61202674 - L1PA6 LINE L1 -1855 4291 4104 21 36 0 0 chr9 56660685 56660713 -61201914 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr9 56661245 56661268 -61201359 + AT_rich Low_complexity Low_complexity 1 23 0 207 0 0 0 chr9 56663773 56663796 -61198831 + (A)n Simple_repeat Simple_repeat 1 23 0 1239 94 60 77 chr9 56666526 56666760 -61195867 - MER30 DNA MER1_type 0 230 1 274 161 0 0 chr9 56666802 56666858 -61195769 - L1M4 LINE L1 -3024 3122 3067 29 28 0 0 chr9 56667211 56667247 -61195380 + AT_rich Low_complexity Low_complexity 1 36 0 408 270 36 15 chr9 56668102 56668239 -61194388 + MIR SINE MIR 79 218 -44 220 270 139 26 chr9 56668702 56668817 -61193810 + MIR SINE MIR 61 188 -74 412 283 94 14 chr9 56669457 56669595 -61193032 + MIR SINE MIR 37 185 -77 386 256 149 48 chr9 56669624 56670031 -61192596 - MLT1J LTR MaLR -18 493 3 781 167 7 27 chr9 56672091 56672241 -61190386 - MER3 DNA MER1_type -58 151 5 1816 179 110 13 chr9 56672534 56672924 -61189703 - MSTA LTR MaLR 0 428 1 610 292 164 18 chr9 56673127 56673463 -61189164 + L3 LINE CR1 1134 1518 -59 199 175 0 25 chr9 56673632 56673672 -61188955 + MIR3 SINE MIR 159 197 -11 282 342 55 59 chr9 56673724 56673996 -61188631 + L2 LINE L2 2581 2851 -463 349 229 0 14 chr9 56724295 56724365 -61138262 - MER115 DNA AcHobo -137 556 488 469 300 25 59 chr9 56724452 56724689 -61137938 - MER115 DNA AcHobo -388 305 77 209 139 28 0 chr9 56724851 56724887 -61137740 + (TA)n Simple_repeat Simple_repeat 2 38 0 334 240 31 10 chr9 56729823 56729919 -61132708 + L2 LINE L2 3136 3233 -39 1815 220 33 22 chr9 56730079 56730533 -61132094 - MLT1C LTR MaLR -2 465 7 1177 200 70 72 chr9 56730664 56731009 -61131618 + MER2 DNA MER2_type 1 344 0 298 185 0 0 chr9 56731987 56732041 -61130586 + MLT1H LTR MaLR 1 54 -495 308 274 18 44 chr9 56732131 56732244 -61130383 + MLT1H LTR MaLR 227 336 -213 2087 124 0 113 chr9 56732244 56732624 -61130003 - MER1B DNA MER1_type 0 337 1 322 280 105 28 chr9 56733048 56733191 -61129436 - MIR SINE MIR -80 182 29 261 0 0 0 chr9 56735020 56735049 -61127578 + (T)n Simple_repeat Simple_repeat 1 29 0 256 239 68 34 chr9 56737155 56737243 -61125384 + MIR SINE MIR 7 97 -165 552 286 41 6 chr9 56737284 56737455 -61125172 - MIR SINE MIR -79 183 7 1409 139 49 5 chr9 56738822 56739045 -61123582 - MER46A DNA MER2_type -3 233 1 279 0 0 0 chr9 56740126 56740157 -61122470 + (CA)n Simple_repeat Simple_repeat 2 32 0 205 180 213 0 chr9 56740202 56740263 -61122364 - L2 LINE L2 -8 3264 3191 2025 152 0 9 chr9 56740756 56741071 -61121556 - AluJb SINE Alu 0 312 1 354 91 0 0 chr9 56741887 56741942 -61120685 + (TC)n Simple_repeat Simple_repeat 2 56 0 23 0 0 0 chr9 56742895 56742918 -61119709 + AT_rich Low_complexity Low_complexity 1 23 0 2524 59 0 3 chr9 56743037 56743342 -61119285 - AluY SINE Alu -7 304 1 351 206 294 0 chr9 56745128 56745230 -61117397 + MER94 DNA DNA 2 133 -1 362 286 120 32 chr9 56745796 56746013 -61116614 - MIR SINE MIR -16 246 11 228 67 0 0 chr9 56746560 56746590 -61116037 + (CA)n Simple_repeat Simple_repeat 2 31 0 29 47 0 0 chr9 56746708 56746751 -61115876 + AT_rich Low_complexity Low_complexity 1 43 0 229 313 45 116 chr9 56747571 56747769 -61114858 - L2 LINE L2 -95 3177 2994 2089 118 7 10 chr9 56749836 56750133 -61112494 - AluSg SINE Alu -14 296 1 253 333 0 34 chr9 56750233 56750380 -61112247 + CT-rich Low_complexity Low_complexity 6 147 0 450 204 135 29 chr9 56751502 56751737 -61110890 - MER46C DNA MER2_type -21 317 1 25 51 0 0 chr9 56751984 56752023 -61110604 + AT_rich Low_complexity Low_complexity 1 39 0 441 54 0 0 chr9 56752030 56752086 -61110541 + (CA)n Simple_repeat Simple_repeat 2 57 0 410 167 12 0 chr9 56752086 56752170 -61110457 + CT-rich Low_complexity Low_complexity 2 86 0 14568 27 6 5 chr9 56752803 56754634 -61107993 + L1P2 LINE L1 3673 5501 -654 1059 217 65 23 chr9 56755448 56755757 -61106870 - MER33 DNA MER1_type -2 322 1 492 336 71 63 chr9 56755844 56756240 -61106387 + L2 LINE L2 2856 3254 -18 217 338 40 0 chr9 56756313 56756387 -61106240 + L2 LINE L2 3153 3229 -43 225 0 0 0 chr9 56756403 56756428 -61106199 + (TG)n Simple_repeat Simple_repeat 1 25 0 208 77 51 0 chr9 56757934 56757973 -61104654 + A-rich Low_complexity Low_complexity 4 44 0 8121 78 34 3 chr9 56758051 56759191 -61103436 - L1P LINE L1 -2400 3746 2572 2022 148 0 0 chr9 56759313 56759611 -61103016 + AluSx SINE Alu 2 299 -13 200 286 20 71 chr9 56760011 56760109 -61102518 + MIR SINE MIR 30 122 -140 209 246 14 58 chr9 56762820 56762889 -61099738 + L2 LINE L2 3248 3313 0 198 103 0 0 chr9 56763174 56763203 -61099424 + (CTG)n Simple_repeat Simple_repeat 3 31 0 1739 158 3 7 chr9 56763283 56763568 -61099059 - AluJb SINE Alu -28 284 1 267 214 134 64 chr9 56763759 56763946 -61098681 - L1MC5 LINE L1 -51 7910 7711 337 308 209 24 chr9 56765042 56765373 -61097254 + L2 LINE L2 2922 3313 0 212 324 80 68 chr9 56766364 56766540 -61096087 + MIR SINE MIR 21 198 -64 201 255 0 43 chr9 56767414 56767461 -61095166 + L2 LINE L2 3258 3302 -11 1750 117 40 18 chr9 56768276 56768588 -61094039 - AluSx SINE Alu 0 322 5 398 316 128 54 chr9 56769798 56770351 -61092276 + L2 LINE L2 300 893 -2421 842 274 182 26 chr9 56770355 56771039 -61091588 + L2 LINE L2 2539 3313 0 288 308 88 22 chr9 56771191 56771373 -61091254 + L2 LINE L2 3120 3313 0 190 326 70 70 chr9 56771690 56771862 -61090765 + L2 LINE L2 2396 2567 -747 196 225 78 113 chr9 56772911 56773053 -61089574 - MIR SINE MIR -89 173 37 435 92 0 0 chr9 56774857 56774922 -61087705 + (TG)n Simple_repeat Simple_repeat 2 66 0 209 224 69 17 chr9 56775268 56775326 -61087301 - L2 LINE L2 -1 3312 3252 1861 121 0 0 chr9 56776424 56776681 -61085946 + AluSc SINE Alu 44 300 -9 215 250 40 26 chr9 56777610 56777686 -61084941 - MIR SINE MIR -30 178 102 268 270 27 81 chr9 56778703 56778851 -61083776 - MIR SINE MIR -44 218 79 1681 149 13 44 chr9 56779082 56779397 -61083230 + AluJo SINE Alu 8 312 0 279 231 39 39 chr9 56780445 56780523 -61082104 + MIR3 SINE MIR 82 159 -49 416 153 82 12 chr9 56780563 56780648 -61081979 - MER5A DNA MER1_type -87 102 12 433 237 17 107 chr9 56782496 56782673 -61079954 - MER5B DNA MER1_type -17 161 1 1338 173 31 87 chr9 56783264 56783587 -61079040 - AluJb SINE Alu -5 307 3 545 318 82 31 chr9 56784151 56784683 -61077944 + L2 LINE L2 2740 3295 -18 234 196 22 0 chr9 56785211 56785257 -61077370 - MLT1A1 LTR MaLR 0 365 319 270 254 0 55 chr9 56785429 56785539 -61077088 + AluSg SINE Alu 1 104 -196 250 268 18 0 chr9 56785718 56785774 -61076853 + MLT1H LTR MaLR 163 219 -330 1624 208 0 3 chr9 56785781 56786094 -61076533 + AluSx SINE Alu 1 312 0 347 218 113 8 chr9 56786180 56786304 -61076323 + MLT1H LTR MaLR 400 536 -13 2251 104 3 22 chr9 56786583 56786900 -61075727 - AluSx SINE Alu -1 311 1 462 101 0 0 chr9 56788765 56788834 -61073793 + (TC)n Simple_repeat Simple_repeat 2 70 0 257 406 58 0 chr9 56789607 56789745 -61072882 - L2 LINE L2 -8 3264 3119 1170 170 21 44 chr9 56790642 56790997 -61071630 - MSTB2 LTR MaLR 0 457 1 542 269 35 0 chr9 56791442 56791583 -61071044 + MIR SINE MIR 103 248 -14 272 264 40 57 chr9 56792500 56792642 -61069985 - MIR SINE MIR -65 143 11 321 330 116 9 chr9 56794864 56795097 -61067530 - MLT1J LTR MaLR -16 495 238 385 293 33 13 chr9 56795310 56795460 -61067167 + MLT1J LTR MaLR 359 511 0 288 292 142 8 chr9 56795554 56795674 -61066953 - L2 LINE L2 0 3272 3137 261 75 0 0 chr9 56795743 56795783 -61066844 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 255 381 25 17 chr9 56795812 56795930 -61066697 - MIR SINE MIR -115 147 29 21 0 0 0 chr9 56796223 56796244 -61066383 + AT_rich Low_complexity Low_complexity 1 21 0 672 287 187 5 chr9 56796840 56797209 -61065418 - MLT1J2 LTR MaLR -14 436 1 716 249 75 67 chr9 56797780 56798183 -61064444 + MLT1I LTR MaLR 4 410 -40 1317 274 89 18 chr9 56798529 56799032 -61063595 - L1ME3A LINE L1 -219 5951 5413 430 244 24 24 chr9 56800307 56800430 -61062197 + MER5C DNA MER1_type 2 124 -200 255 259 35 12 chr9 56800483 56800568 -61062059 + MER5C DNA MER1_type 238 324 0 3241 130 33 74 chr9 56800606 56801244 -61061383 - L1MA7 LINE L1 -7 6284 5673 209 327 0 0 chr9 56801270 56801322 -61061305 - MER5A DNA MER1_type -70 119 68 603 247 106 5 chr9 56801695 56801936 -61060691 + L1MC4 LINE L1 6644 7034 -860 524 260 42 62 chr9 56802450 56802595 -61060032 + MIR SINE MIR 73 215 -47 2704 102 21 16 chr9 56802595 56802967 -61059660 - THE1C LTR MaLR -1 374 1 524 260 42 62 chr9 56802967 56803013 -61059614 + MIR SINE MIR 215 260 -2 344 296 75 11 chr9 56803078 56803264 -61059363 + L1MC4a LINE L1 7012 7209 -599 1173 225 100 66 chr9 56803285 56803863 -61058764 + L1MC4 LINE L1 7419 8016 -26 938 185 6 31 chr9 56804572 56804734 -61057893 + FAM SINE Alu 1 158 -17 241 182 0 0 chr9 56804824 56804868 -61057759 - MIR3 SINE MIR -10 198 155 180 152 0 0 chr9 56804902 56804935 -61057692 + (TG)n Simple_repeat Simple_repeat 2 34 0 306 238 94 55 chr9 56804944 56805125 -61057502 + MER112 DNA MER1_type 73 260 0 340 313 83 26 chr9 56805309 56805501 -61057126 - L2 LINE L2 -268 3045 2843 332 314 107 65 chr9 56805898 56806086 -61056541 + L1ME LINE L1 5374 5582 -539 1650 150 34 44 chr9 56806086 56806380 -61056247 - AluSx SINE Alu -21 291 1 332 314 107 65 chr9 56806380 56806500 -61056127 + L1ME LINE L1 5582 5695 -426 23 54 0 0 chr9 56806503 56806540 -61056087 + AT_rich Low_complexity Low_complexity 1 37 0 398 215 0 43 chr9 56807475 56807568 -61055059 - MIR SINE MIR -118 144 56 1969 152 0 3 chr9 56807905 56808264 -61054363 - AluSx SINE Alu 0 312 1 214 270 16 0 chr9 56808321 56808384 -61054243 - L2 LINE L2 0 3313 3250 750 318 40 17 chr9 56808544 56808840 -61053787 - L3 LINE CR1 -1089 488 186 247 182 0 0 chr9 56810643 56810698 -61051929 + L1P5 LINE L1 5553 5593 -558 784 184 0 35 chr9 56810701 56810842 -61051785 + FLAM_A SINE Alu 7 142 0 1090 169 6 0 chr9 56810842 56811025 -61051602 + L1MA8 LINE L1 5606 5789 -502 426 54 81 27 chr9 56811031 56811257 -61051370 + (TA)n Simple_repeat Simple_repeat 1 238 0 2762 104 87 9 chr9 56811309 56811760 -61050867 + L1MA8 LINE L1 5803 6288 -3 206 293 53 60 chr9 56811813 56811946 -61050681 - MIR SINE MIR -61 201 70 219 88 0 0 chr9 56812596 56812630 -61049997 + (CA)n Simple_repeat Simple_repeat 1 34 0 218 242 0 30 chr9 56813438 56813504 -61049123 + CT-rich Low_complexity Low_complexity 4 67 0 2181 235 98 16 chr9 56813515 56814069 -61048558 + Zaphod DNA AcHobo 13 611 -3420 1484 247 80 10 chr9 56814199 56814685 -61047942 + Zaphod DNA AcHobo 3481 4000 -31 247 299 0 11 chr9 56814698 56814785 -61047842 + CT-rich Low_complexity Low_complexity 4 89 0 26 50 0 0 chr9 56814820 56814860 -61047767 + AT_rich Low_complexity Low_complexity 1 40 0 672 254 34 6 chr9 56815907 56816084 -61046543 - L2 LINE L2 0 3313 3132 261 374 66 30 chr9 56816069 56816374 -61046253 + L3 LINE CR1 1114 1429 -148 * 1001 218 64 58 chr9 56816404 56816748 -61045879 + L1ME2 LINE L1 5789 6134 -30 321 207 35 9 chr9 56816786 56816902 -61045725 + GA-rich Low_complexity Low_complexity 2 120 0 400 294 10 57 chr9 56816931 56817125 -61045502 + L1MC4 LINE L1 7826 8010 -32 192 333 29 76 chr9 56817161 56817371 -61045256 - MIR SINE MIR 0 262 63 616 142 19 0 chr9 56817391 56817497 -61045130 + MER3 DNA MER1_type 46 153 -56 1322 129 74 146 chr9 56817530 56817638 -61044989 + MER3 DNA MER1_type 2238 2352 -272 1714 155 17 24 chr9 56817638 56817929 -61044698 - AluJo SINE Alu -23 289 1 1322 129 74 146 chr9 56817929 56817959 -61044668 + MER3 DNA MER1_type 2352 2383 -241 1536 178 46 18 chr9 56817959 56818240 -61044387 - AluJo SINE Alu -23 289 1 1322 129 74 146 chr9 56818240 56818476 -61044151 + MER3 DNA MER1_type 2383 2634 10 2423 132 25 6 chr9 56818476 56818833 -61043794 - THE1B LTR MaLR 0 364 1 10530 117 33 45 chr9 56818833 56820013 -61042614 - THE1B-int LTR MaLR -1 1579 387 1517 136 4 25 chr9 56820013 56820249 -61042378 + AluSx SINE Alu 60 290 -22 1915 166 0 0 chr9 56820249 56820550 -61042077 + AluSx SINE Alu 1 301 -11 10530 117 33 45 chr9 56820550 56820965 -61041662 - THE1B-int LTR MaLR -1191 389 1 2240 116 87 3 chr9 56820965 56821300 -61041327 - THE1B LTR MaLR 0 364 2 1322 129 74 146 chr9 56821300 56821338 -61041289 + MER3 DNA MER1_type 2585 2624 0 553 177 48 16 chr9 56821486 56821610 -61041017 - MIR SINE MIR -24 238 111 2285 98 3 3 chr9 56822159 56822465 -61040162 - AluSp SINE Alu -7 306 1 2287 102 7 0 chr9 56822481 56822775 -61039852 - AluSc SINE Alu -13 296 1 349 121 121 0 chr9 56823364 56823430 -61039197 + MER5A DNA MER1_type 1 74 -115 2213 94 3 10 chr9 56823434 56823732 -61038895 + AluSx SINE Alu 3 298 -14 714 219 47 0 chr9 56823850 56824019 -61038608 + MER97a DNA MER1_type? 1 177 -717 447 92 0 0 chr9 56825763 56825828 -61036799 + (TTCC)n Simple_repeat Simple_repeat 3 67 0 1999 125 0 4 chr9 56825833 56826113 -61036514 - AluSp SINE Alu -34 279 1 2457 176 20 0 chr9 56826717 56827126 -61035501 - MSTB1 LTR MaLR -1 431 15 6530 184 73 17 chr9 56827147 56827461 -61035166 - MSTB1-int LTR MaLR 0 1651 1356 1443 195 18 81 chr9 56827461 56827794 -61034833 - AluJb SINE Alu 0 312 1 6530 184 73 17 chr9 56827794 56828528 -61034099 - MSTB1-int LTR MaLR -295 1356 522 2165 75 0 78 chr9 56828528 56828849 -61033778 - AluY SINE Alu -5 306 11 6530 184 73 17 chr9 56828849 56829026 -61033601 - MSTB1-int LTR MaLR -1129 522 356 1861 166 22 0 chr9 56829373 56829692 -61032935 - MSTB1-int LTR MaLR -1325 326 1 2574 161 16 41 chr9 56829692 56830133 -61032494 - MSTB1 LTR MaLR 0 432 3 1755 178 72 49 chr9 56830418 56830467 -61032160 - MLT2C1 LTR ERVL 0 397 351 420 20 0 0 chr9 56830467 56830516 -61032111 + (TG)n Simple_repeat Simple_repeat 2 50 0 1755 178 72 49 chr9 56830516 56830854 -61031773 - MLT2C1 LTR ERVL -46 351 1 232 293 73 24 chr9 56830887 56830969 -61031658 - L2 LINE L2 -283 2989 2904 252 86 0 0 chr9 56830990 56831025 -61031602 + (A)n Simple_repeat Simple_repeat 1 35 0 201 196 0 22 chr9 56831663 56831709 -61030918 + A-rich Low_complexity Low_complexity 2 46 0 186 301 110 14 chr9 56831878 56831951 -61030676 - L2 LINE L2 -19 3253 3174 1281 142 5 5 chr9 56832004 56832194 -61030433 - L1PA16 LINE L1 -9 6157 5968 5413 136 20 20 chr9 56832205 56833920 -61028707 - L1PA15 LINE L1 -1 6164 4460 286 213 11 96 chr9 56835373 56835467 -61027160 - MIR SINE MIR -64 198 113 * 420 292 13 50 chr9 56835462 56835652 -61026975 - MIR SINE MIR -62 146 12 1429 123 0 29 chr9 56835767 56836010 -61026617 + L1MA4 LINE L1 6060 6295 -5 1026 222 43 4 chr9 56836460 56836694 -61025933 + MLT1G1 LTR MaLR 1 243 -352 216 169 17 34 chr9 56836754 56836813 -61025814 + (TCTA)n Simple_repeat Simple_repeat 2 59 0 5829 108 9 40 chr9 56836813 56837708 -61024919 - MER4D LTR ERV1 -5 867 1 213 268 18 0 chr9 56838094 56838150 -61024477 + CT-rich Low_complexity Low_complexity 4 60 0 355 183 0 0 chr9 56838222 56838282 -61024345 - L2 LINE L2 -14 3258 3199 1626 168 0 4 chr9 56839733 56840015 -61022612 + AluJb SINE Alu 34 314 0 324 265 252 0 chr9 56840015 56840166 -61022461 - MIR SINE MIR -25 237 49 3374 135 115 63 chr9 56840206 56840722 -61021905 + MER39 LTR ERV1 1 561 -146 2263 90 33 0 chr9 56840722 56841021 -61021606 - AluSx SINE Alu -3 309 1 3374 135 115 63 chr9 56841021 56841172 -61021455 + MER39 LTR ERV1 561 703 -4 213 132 0 0 chr9 56841451 56841489 -61021138 + (TAA)n Simple_repeat Simple_repeat 3 40 0 1002 222 57 0 chr9 56842555 56842767 -61019860 - MER58A DNA MER1_type 0 224 1 1008 207 37 97 chr9 56842932 56843283 -61019344 + LTR37A LTR ERV1 19 389 -37 2099 138 3 0 chr9 56843283 56843588 -61019039 - AluSx SINE Alu -6 306 1 1008 207 37 97 chr9 56843588 56843632 -61018995 + LTR37A LTR ERV1 389 389 -37 1595 182 37 17 chr9 56843632 56843928 -61018699 - AluJo SINE Alu -7 305 4 1008 207 37 97 chr9 56843928 56843965 -61018662 + LTR37A LTR ERV1 388 426 0 286 301 65 8 chr9 56844413 56844536 -61018091 + LTR16C LTR ERVL 362 491 0 2145 119 3 3 chr9 56845134 56845428 -61017199 - AluSc SINE Alu -15 294 1 256 253 60 12 chr9 56845600 56845683 -61016944 + MIR SINE MIR 104 190 -72 21 0 0 0 chr9 56847096 56847117 -61015510 + AT_rich Low_complexity Low_complexity 1 21 0 1718 165 14 21 chr9 56848841 56849132 -61013495 - AluJo SINE Alu -23 289 1 557 224 162 56 chr9 56849181 56849484 -61013143 + Charlie7 DNA MER1_type 384 718 -1894 2265 153 38 19 chr9 56849504 56849928 -61012699 + MSTB1 LTR MaLR 1 432 0 243 258 43 0 chr9 56849966 56850059 -61012568 + Charlie7 DNA MER1_type 2516 2612 0 2779 182 35 7 chr9 56850255 56850799 -61011828 - MER89 LTR ERV1 0 559 1 31 0 0 0 chr9 56851311 56851342 -61011285 + AT_rich Low_complexity Low_complexity 1 31 0 2144 150 0 0 chr9 56851984 56852291 -61010336 + AluSx SINE Alu 1 307 -5 490 249 54 49 chr9 56855500 56855705 -61006922 - LTR16B LTR ERVL -26 438 233 388 294 49 130 chr9 56855868 56856558 -61006069 + L1MEd LINE L1 2 635 -5484 305 293 9 17 chr9 56856568 56856684 -61005943 + L1MEd LINE L1 2249 2363 -3766 1469 234 25 0 chr9 56856684 56856804 -61005823 + AluJo SINE Alu 1 117 -195 543 31 0 0 chr9 56856804 56856869 -61005758 + (CTA)n Simple_repeat Simple_repeat 1 65 0 1469 234 25 0 chr9 56856869 56857034 -61005593 + AluJo SINE Alu 117 293 -19 1578 298 102 13 chr9 56857036 56857776 -61004851 - L2 LINE L2 -167 3146 2342 357 291 28 0 chr9 56857967 56858108 -61004519 + L1MEd LINE L1 2670 2814 -3315 302 238 46 118 chr9 56859106 56859455 -61003172 - L1ME4a LINE L1 0 6121 5798 595 244 16 0 chr9 56859997 56860124 -61002503 + MIR SINE MIR 60 188 -74 685 241 41 6 chr9 56860207 56860377 -61002250 + MIR SINE MIR 8 183 -79 351 192 0 0 chr9 56860378 56860451 -61002176 + (TA)n Simple_repeat Simple_repeat 1 73 0 972 144 59 30 chr9 56861362 56861564 -61001063 - L1PB4 LINE L1 0 6156 5949 649 191 151 55 chr9 56862967 56863166 -60999461 - MER20 DNA MER1_type 0 219 2 303 331 58 17 chr9 56863440 56863612 -60999015 - MIR SINE MIR -44 218 40 301 193 57 23 chr9 56864634 56864722 -60997905 - L1MC5 LINE L1 -48 7913 7823 750 243 233 26 chr9 56864727 56865217 -60997410 - MLT1E LTR MaLR 0 593 3 456 237 162 0 chr9 56865220 56865393 -60997234 - L1MC5 LINE L1 -158 7803 7603 463 186 124 25 chr9 56865445 56865606 -60997021 - L1MC5 LINE L1 -444 7517 7341 966 205 104 20 chr9 56865613 56865911 -60996716 + HsTC2 DNA Tc2 15 337 -1561 591 216 161 0 chr9 56865931 56866093 -60996534 + HsTC2 DNA Tc2 1164 1351 -547 2406 90 0 6 chr9 56866159 56866470 -60996157 + AluSc SINE Alu 1 309 0 312 211 58 26 chr9 56867231 56867387 -60995240 + HsTC2 DNA Tc2 1737 1897 -1 583 309 31 31 chr9 56867731 56868090 -60994537 - HsTC2 DNA Tc2 -1030 868 510 570 194 39 127 chr9 56868143 56868426 -60994201 - HsTC2 DNA Tc2 -1636 262 5 346 280 124 32 chr9 56868428 56868614 -60994013 - MIR SINE MIR 0 262 60 592 176 24 16 chr9 56868697 56868822 -60993805 + MER3 DNA MER1_type 3 128 -81 198 91 0 0 chr9 56868825 56868858 -60993769 + (TTTAA)n Simple_repeat Simple_repeat 3 35 0 31 44 0 0 chr9 56869237 56869282 -60993345 + AT_rich Low_complexity Low_complexity 1 45 0 427 288 0 49 chr9 56869321 56869483 -60993144 - MIR SINE MIR -63 145 22 2015 93 4 4 chr9 56869564 56869842 -60992785 + AluSg SINE Alu 1 278 -32 415 202 19 0 chr9 56869842 56869946 -60992681 + GA-rich Low_complexity Low_complexity 3 108 0 181 294 0 0 chr9 56871247 56871298 -60991329 - L2 LINE L2 -7 3306 3256 31 0 0 0 chr9 56871902 56871933 -60990694 + AT_rich Low_complexity Low_complexity 1 31 0 1790 152 0 50 chr9 56872587 56872890 -60989737 - AluJo SINE Alu -24 288 1 21 36 0 0 chr9 56873213 56873241 -60989386 + AT_rich Low_complexity Low_complexity 1 28 0 2191 82 4 0 chr9 56873273 56873554 -60989073 + AluSg1 SINE Alu 23 304 -5 1850 126 98 0 chr9 56873688 56873965 -60988662 - AluSq SINE Alu -9 304 1 207 222 0 0 chr9 56874367 56874412 -60988215 + L2 LINE L2 3264 3308 -5 188 162 44 29 chr9 56874576 56874644 -60987983 + GA-rich Low_complexity Low_complexity 4 72 0 238 372 105 34 chr9 56875321 56875587 -60987040 + L2 LINE L2 2807 3091 -181 599 307 57 35 chr9 56875712 56876113 -60986514 - MLT1K LTR MaLR -56 532 123 2193 92 10 3 chr9 56876741 56877035 -60985592 + AluSg SINE Alu 1 296 -14 2474 87 3 0 chr9 56877276 56877587 -60985040 - AluSp SINE Alu -1 312 1 531 279 98 29 chr9 56877673 56877877 -60984750 + MIR SINE MIR 28 245 -17 758 190 152 0 chr9 56878720 56878931 -60983696 - LTR37A LTR ERV1 -54 372 130 874 176 113 67 chr9 56878944 56879273 -60983354 - L1MC4 LINE L1 -87 7955 7612 24 32 0 0 chr9 56880472 56880503 -60982124 + AT_rich Low_complexity Low_complexity 1 31 0 24 85 0 0 chr9 56881299 56881358 -60981269 + AT_rich Low_complexity Low_complexity 1 59 0 2060 136 0 0 chr9 56881439 56881733 -60980894 + AluSx SINE Alu 1 294 -18 2956 273 132 46 chr9 56884506 56885050 -60977577 - L2 LINE L2 -200 3113 2617 267 79 0 0 chr9 56885050 56885088 -60977539 + (TG)n Simple_repeat Simple_repeat 1 38 0 2956 273 132 46 chr9 56885088 56885177 -60977450 - L2 LINE L2 -696 2617 2537 830 188 15 66 chr9 56885177 56885245 -60977382 + MER5A DNA MER1_type 1 71 -118 2442 73 7 3 chr9 56885245 56885548 -60977079 - AluY SINE Alu -7 304 1 830 188 15 66 chr9 56885548 56885676 -60976951 + MER5A DNA MER1_type 71 187 -2 2956 273 132 46 chr9 56885676 56886654 -60975973 - L2 LINE L2 -776 2537 269 5815 237 17 78 chr9 56886754 56889155 -60973472 - L1P LINE L1 -1955 4191 1937 2054 174 5 46 chr9 56889872 56890303 -60972324 + L1MC1 LINE L1 5904 6316 -17 271 276 20 0 chr9 56890420 56890518 -60972109 - L1MC/D LINE L1 -2041 5767 5668 405 353 41 0 chr9 56890808 56891029 -60971598 + L1MC/D LINE L1 5354 5583 -2225 623 321 98 33 chr9 56891218 56891586 -60971041 - L2 LINE L2 -1 3312 2921 1161 186 144 29 chr9 56891593 56891942 -60970685 + MLT1B LTR MaLR 2 396 0 237 308 108 73 chr9 56891972 56892177 -60970450 - L2 LINE L2 -485 2829 2610 2219 107 0 7 chr9 56892177 56892477 -60970150 + AluSx SINE Alu 1 298 -14 237 308 108 73 chr9 56892477 56892557 -60970070 - L2 LINE L2 -704 2610 2534 714 219 47 0 chr9 56892595 56892764 -60969863 + MER97a DNA MER1_type? 1 177 -717 447 92 0 0 chr9 56894508 56894573 -60968054 + (TTCC)n Simple_repeat Simple_repeat 3 67 0 1999 125 0 4 chr9 56894578 56894858 -60967769 - AluSp SINE Alu -34 279 1 2457 176 20 0 chr9 56895462 56895871 -60966756 - MSTB1 LTR MaLR -1 431 15 6058 189 19 23 chr9 56895892 56896206 -60966421 - MSTB1-int LTR MaLR 0 1651 1337 1443 195 18 81 chr9 56896206 56896539 -60966088 - AluJb SINE Alu 0 312 1 6058 189 19 23 chr9 56896539 56897274 -60965353 - MSTB1-int LTR MaLR -314 1337 533 2165 75 0 78 chr9 56897274 56897595 -60965032 - AluY SINE Alu -5 306 11 6058 189 19 23 chr9 56897595 56897772 -60964855 - MSTB1-int LTR MaLR -1118 533 357 1861 166 22 0 chr9 56898119 56898438 -60964189 - MSTB1-int LTR MaLR -1325 326 1 2574 161 16 41 chr9 56898438 56898879 -60963748 - MSTB1 LTR MaLR 0 432 3 1755 178 72 49 chr9 56899164 56899213 -60963414 - MLT2C1 LTR ERVL 0 397 351 420 20 0 0 chr9 56899213 56899262 -60963365 + (TG)n Simple_repeat Simple_repeat 2 50 0 1755 178 72 49 chr9 56899262 56899600 -60963027 - MLT2C1 LTR ERVL -46 351 1 233 286 83 24 chr9 56899631 56899715 -60962912 - L2 LINE L2 -280 2992 2904 201 196 0 22 chr9 56900408 56900454 -60962173 + A-rich Low_complexity Low_complexity 2 46 0 186 301 110 14 chr9 56900623 56900696 -60961931 - L2 LINE L2 -19 3253 3174 1241 139 6 6 chr9 56900749 56900929 -60961698 - L1PA16 LINE L1 -9 6157 5978 6724 244 29 12 chr9 56901030 56903823 -60958804 - L1PA13 LINE L1 -2670 4127 1283 2125 310 41 28 chr9 56903889 56904717 -60957910 - L1PA13 LINE L1 -5948 839 1 26 30 0 0 chr9 56904900 56904933 -60957694 + AT_rich Low_complexity Low_complexity 1 33 0 831 158 0 0 chr9 56905179 56905306 -60957321 + FLAM_C SINE Alu 1 127 -16 1784 155 14 7 chr9 56905521 56905799 -60956828 - AluSx SINE Alu -32 280 1 727 143 18 0 chr9 56905799 56905911 -60956716 - Tigger1 DNA MER2_type -236 2182 2069 8581 128 37 5 chr9 56905920 56907259 -60955368 - Tigger1 DNA MER2_type -793 1625 244 237 125 0 0 chr9 56907259 56907299 -60955328 + HSMAR1 DNA Mariner 2 41 -1246 * 551 207 9 35 chr9 56907296 56907412 -60955215 - MER2 DNA MER2_type -232 113 1 1280 171 4 50 chr9 56907445 56907703 -60954924 - Tigger1 DNA MER2_type -2172 246 1 950 177 0 6 chr9 56907703 56907878 -60954749 - L1M3 LINE L1 -394 6807 6634 * 1019 239 49 35 chr9 56907872 56908157 -60954470 - L1M3 LINE L1 -2281 4886 4598 * 2437 222 38 18 chr9 56908155 56908767 -60953860 - L1M3 LINE L1 -4603 2566 1943 507 257 9 22 chr9 56908746 56908934 -60953693 - L1M3 LINE L1 -5030 2061 1562 * 233 256 96 62 chr9 56909358 56909582 -60953045 - L1M3 LINE L1 -6312 753 2 218 278 175 48 chr9 56910740 56910866 -60951761 + MIR3 SINE MIR 10 151 -57 269 307 40 20 chr9 56911012 56911113 -60951514 - MIR SINE MIR -86 122 20 10442 28 10 0 chr9 56912814 56914070 -60948557 - L1PA3 LINE L1 -2717 3429 2162 17601 27 0 0 chr9 56914070 56916799 -60945828 + L1PA3 LINE L1 3439 6168 0 369 145 87 0 chr9 56917038 56917107 -60945520 + Charlie3 DNA MER1_type 1 75 -2635 2506 226 29 58 chr9 56917107 56917898 -60944729 - L1M4 LINE L1 -1457 4689 3922 851 260 57 93 chr9 56918238 56918943 -60943684 - L2 LINE L2 0 3313 2630 563 212 62 34 chr9 56919017 56919163 -60943464 + MER58C DNA MER1_type 36 185 -30 195 254 70 28 chr9 56919472 56919543 -60943084 - MIR SINE MIR -50 212 139 1579 132 69 132 chr9 56919950 56920328 -60942299 + MER101 LTR ERV1 1 354 -120 2646 99 0 109 chr9 56920328 56920410 -60942217 + L1PA15-16 LINE L1 1509 1598 -5251 2223 96 0 17 chr9 56920410 56920703 -60941924 + AluSg SINE Alu 16 303 -7 2646 99 0 109 chr9 56920703 56921133 -60941494 + L1PA15-16 LINE L1 1598 1965 -4884 23 0 0 0 chr9 56921545 56921568 -60941059 + AT_rich Low_complexity Low_complexity 1 23 0 1488 79 0 100 chr9 56922404 56922539 -60940088 - L1PA6 LINE L1 0 6154 6052 8457 71 18 31 chr9 56922539 56923624 -60939003 + MER11C LTR ERVK 1 1071 0 1488 79 0 100 chr9 56923624 56923728 -60938899 - L1PA6 LINE L1 -102 6052 5939 210 311 14 0 chr9 56924165 56924239 -60938388 - MIR SINE MIR -167 95 21 28 0 0 0 chr9 56925043 56925071 -60937556 + GC_rich Low_complexity Low_complexity 1 28 0 561 15 0 0 chr9 56928536 56928602 -60934025 + (TG)n Simple_repeat Simple_repeat 2 67 0 268 310 84 80 chr9 56929664 56929903 -60932724 - L2 LINE L2 -18 3254 3015 205 338 59 36 chr9 56930099 56930318 -60932309 - L2 LINE L2 -546 2768 2545 823 289 70 47 chr9 56930477 56930962 -60931665 - L2 LINE L2 0 3313 2818 237 132 0 0 chr9 56931134 56931172 -60931455 + (TGGA)n Simple_repeat Simple_repeat 1 38 0 1495 218 31 23 chr9 56931179 56931531 -60931096 + MLT1A2 LTR MaLR 4 358 -16 3047 136 27 18 chr9 56931531 56932043 -60930584 + MLT2A2 LTR ERVL 1 515 0 189 178 0 0 chr9 56932139 56932184 -60930443 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 661 318 5 5 chr9 56933125 56933320 -60929307 + MIR SINE MIR 7 201 -61 189 290 29 14 chr9 56933920 56933989 -60928638 - MER5A DNA MER1_type -94 95 26 693 266 19 43 chr9 56935007 56935214 -60927413 - MIR SINE MIR -21 241 40 873 220 6 0 chr9 56935785 56935962 -60926665 - MLT1D LTR MaLR 0 505 328 29 47 0 0 chr9 56936802 56936845 -60925782 + AT_rich Low_complexity Low_complexity 1 43 0 836 280 111 43 chr9 56937241 56937890 -60924737 + L1MC4a LINE L1 5263 5955 -1853 1036 207 4 39 chr9 56938333 56938565 -60924062 + AluJb SINE Alu 86 309 -3 787 255 99 35 chr9 56940021 56940534 -60922093 + L1MEd LINE L1 785 1235 -4893 959 226 15 19 chr9 56941087 56941353 -60921274 + L1MA4 LINE L1 6036 6300 0 244 321 77 0 chr9 56941442 56941638 -60920989 + L1MEd LINE L1 2095 2305 -3824 680 273 51 32 chr9 56941684 56942054 -60920573 + L1M4 LINE L1 4439 4815 -1331 230 222 71 30 chr9 56942187 56942286 -60920341 + L1M4 LINE L1 5130 5232 -914 240 306 0 0 chr9 56943201 56943273 -60919354 + MARNA DNA Mariner 465 536 -50 275 336 86 7 chr9 56943437 56943577 -60919050 - MIR3 SINE MIR -8 200 50 442 313 88 16 chr9 56943865 56944057 -60918570 + L2 LINE L2 2804 3009 -304 322 196 20 33 chr9 56944186 56944339 -60918288 + CT-rich Low_complexity Low_complexity 2 152 0 1680 258 90 6 chr9 56945126 56945794 -60916833 + L1M4 LINE L1 3740 4463 -1683 1687 100 31 50 chr9 56946598 56946857 -60915770 + AluSc SINE Alu 52 305 -4 370 209 26 70 chr9 56947529 56947644 -60914983 - L1M4 LINE L1 -6104 438 329 236 213 16 0 chr9 56948376 56948437 -60914190 + (CA)n Simple_repeat Simple_repeat 2 63 0 2306 98 0 7 chr9 56948446 56948753 -60913874 - AluSq SINE Alu -8 305 1 310 215 56 37 chr9 56948825 56948932 -60913695 - MER63A DNA MER1_type -23 187 79 579 249 54 51 chr9 56949580 56949872 -60912755 + L1MC4 LINE L1 7688 7983 -59 2584 14 0 0 chr9 56949872 56950155 -60912472 - AluYb8 SINE Alu -1 317 35 579 249 54 51 chr9 56950155 56950215 -60912412 + L1MC4 LINE L1 7983 8041 -1 1391 252 69 41 chr9 56950552 56951115 -60911512 - ERVL LTR ERVL -4302 1462 884 718 300 105 16 chr9 56951226 56951599 -60911028 - ERVL LTR ERVL -5077 687 282 505 329 20 0 chr9 56951720 56951866 -60910761 - L2 LINE L2 -2 3270 3122 182 333 32 0 chr9 56953222 56953285 -60909342 - L2 LINE L2 -3 3310 3246 31 26 0 0 chr9 56953981 56954019 -60908608 + AT_rich Low_complexity Low_complexity 1 38 0 2107 170 32 0 chr9 56954319 56954695 -60907932 + MLT1B LTR MaLR 3 390 0 232 299 35 58 chr9 56954702 56954789 -60907838 + MIR SINE MIR 30 114 -94 960 248 68 33 chr9 56954913 56955369 -60907258 + MLT1K LTR MaLR 5 476 0 186 200 25 0 chr9 56956472 56956512 -60906115 - L2 LINE L2 -2 3311 3271 689 199 51 6 chr9 56956912 56957068 -60905559 + MER96B DNA MER1_type? 253 415 -2 276 77 0 0 chr9 56957182 56957221 -60905406 + (TG)n Simple_repeat Simple_repeat 2 40 0 1832 176 0 7 chr9 56957429 56957724 -60904903 + AluJb SINE Alu 1 293 -19 187 263 66 53 chr9 56958697 56958773 -60903854 + MIR SINE MIR 24 100 -108 351 238 109 34 chr9 56959682 56959829 -60902798 - L1ME4a LINE L1 -224 5897 5740 2334 105 0 0 chr9 56960220 56960526 -60902101 - AluSc SINE Alu -3 306 1 1156 286 112 12 chr9 56960622 56961210 -60901417 + MLT2F LTR ERVL 3 649 -14 331 359 82 12 chr9 56961670 56961840 -60900787 - MER91A DNA MER1_type 0 196 15 1998 169 32 3 chr9 56962078 56962457 -60900170 + MLT1B LTR MaLR 1 390 0 207 196 0 118 chr9 56963014 56963065 -60899562 - MER5A DNA MER1_type -1 188 144 22 0 0 0 chr9 56964131 56964153 -60898474 + AT_rich Low_complexity Low_complexity 1 22 0 337 277 177 0 chr9 56966999 56967140 -60895487 + MIR SINE MIR 49 214 -48 201 74 0 0 chr9 56967220 56967247 -60895380 + (TG)n Simple_repeat Simple_repeat 2 28 0 366 268 61 83 chr9 56968156 56968384 -60894243 + L1MEd LINE L1 65 287 -5832 966 269 36 66 chr9 56968618 56969317 -60893310 + L1MEd LINE L1 572 1249 -4870 3221 278 82 41 chr9 56970072 56970604 -60892023 + L1M4 LINE L1 2640 3149 -2997 1722 174 13 17 chr9 56970604 56970902 -60891725 + AluJo SINE Alu 1 297 -15 3221 278 82 41 chr9 56970902 56972619 -60890008 + L1M4 LINE L1 3149 4988 -1158 186 71 0 0 chr9 56972619 56972647 -60889980 + (CA)n Simple_repeat Simple_repeat 1 28 0 3221 278 82 41 chr9 56972647 56972717 -60889910 + L1M4 LINE L1 4988 5054 -1092 234 269 160 26 chr9 56972823 56972979 -60889648 - LTR33A LTR ERVL -342 181 5 180 0 0 0 chr9 56973266 56973286 -60889341 + (TCTA)n Simple_repeat Simple_repeat 2 21 0 183 324 93 14 chr9 56973842 56973981 -60888646 + MIR SINE MIR 63 212 -50 663 290 45 68 chr9 56974097 56974255 -60888372 - MLT1I LTR MaLR -3 406 246 5072 104 28 23 chr9 56974255 56975031 -60887596 - LTR17 LTR ERV1 0 780 1 663 290 45 68 chr9 56975031 56975269 -60887358 - MLT1I LTR MaLR -163 246 19 253 197 0 70 chr9 56975768 56975839 -60886788 + MIR SINE MIR 185 250 -12 515 134 21 10 chr9 56976027 56976124 -60886503 + MER4A LTR ERV1 1 98 -566 1707 119 3 74 chr9 56976124 56976496 -60886131 + MER4A LTR ERV1 261 664 0 467 211 0 21 chr9 56976953 56977048 -60885579 - MLT2E LTR ERVL -500 128 36 736 320 9 18 chr9 56977114 56977339 -60885288 - L2 LINE L2 -283 3030 2808 527 280 34 6 chr9 56978254 56978429 -60884198 + LTR16C LTR ERVL 302 481 -10 646 194 0 45 chr9 56978490 56978624 -60884003 - MIR SINE MIR -70 192 65 222 150 0 0 chr9 56979257 56979297 -60883330 + (TC)n Simple_repeat Simple_repeat 1 40 0 257 250 53 0 chr9 56979866 56979942 -60882685 - MIR SINE MIR -65 197 118 216 280 0 0 chr9 56981120 56981170 -60881457 + MER5B DNA MER1_type 4 53 -125 5977 91 7 10 chr9 56981172 56982170 -60880457 - L1PA7 LINE L1 0 6300 5347 3539 148 26 26 chr9 56982168 56982223 -60880404 - L1MA3 LINE L1 -185 6120 6066 * 2147 115 0 0 chr9 56982223 56982509 -60880118 - AluSx SINE Alu -26 286 1 3539 148 26 26 chr9 56982509 56983143 -60879484 - L1MA3 LINE L1 -238 6067 5431 336 315 99 9 chr9 56983144 56983255 -60879372 + MER5B DNA MER1_type 57 177 -1 244 231 0 175 chr9 56983639 56983727 -60878900 + MER94 DNA DNA 17 72 -62 3787 74 2 0 chr9 56983727 56984227 -60878400 + L1PA7 LINE L1 5654 6154 0 244 231 0 175 chr9 56984227 56984281 -60878346 + MER94 DNA DNA 72 134 0 2025 104 0 0 chr9 56984416 56984676 -60877951 - AluSx SINE Alu -4 308 49 703 281 143 20 chr9 56984685 56985116 -60877511 + MER77 LTR ERV1 119 599 -6 279 234 39 0 chr9 56985330 56985407 -60877220 + LTR50 LTR ERVL 716 795 0 21 0 0 0 chr9 56985437 56985458 -60877169 + AT_rich Low_complexity Low_complexity 1 21 0 2036 194 33 73 chr9 56985894 56986466 -60876161 + MLT2B3 LTR ERVL 6 554 0 1317 217 18 64 chr9 56986818 56986965 -60875662 - MER74A LTR ERVL 0 558 406 1483 218 12 116 chr9 56986965 56987010 -60875617 - MLT2B1 LTR ERVL -1 519 471 378 0 0 0 chr9 56987010 56987052 -60875575 + (TG)n Simple_repeat Simple_repeat 1 42 0 1483 218 12 116 chr9 56987052 56987585 -60875042 - MLT2B1 LTR ERVL -49 471 1 1317 217 18 64 chr9 56987585 56987829 -60874798 - MER74A LTR ERVL -152 406 185 264 367 71 6 chr9 56988173 56988342 -60874285 + MIR SINE MIR 6 185 -77 318 154 39 115 chr9 56988356 56988460 -60874167 + MER21B LTR ERV1 1 96 -767 1279 208 148 33 chr9 56988469 56988902 -60873725 - MER39 LTR ERV1 -5 682 219 267 203 108 14 chr9 56988892 56988966 -60873661 - LTR48B LTR ERV1 -542 102 22 * 3596 206 41 26 chr9 56988988 56989809 -60872818 + MER21B LTR ERV1 19 852 -11 2245 98 20 0 chr9 56990154 56990451 -60872176 + AluSx SINE Alu 1 303 -9 220 215 46 15 chr9 56991947 56992012 -60870615 + MER5B DNA MER1_type 94 160 -18 189 231 0 77 chr9 56992095 56992147 -60870480 - L2 LINE L2 -16 3256 3209 446 268 34 88 chr9 56992235 56992440 -60870187 - MIR SINE MIR -36 226 33 745 238 77 0 chr9 56993396 56993577 -60869050 + MIR SINE MIR 7 201 -61 523 325 58 12 chr9 56993812 56994055 -60868572 - MIR SINE MIR -7 255 2 265 136 220 0 chr9 56994424 56994483 -60868144 - MER5A DNA MER1_type -78 111 40 230 337 12 0 chr9 56994504 56994590 -60868037 - MIR3 SINE MIR -37 171 85 363 344 48 21 chr9 56995285 56995474 -60867153 - MIR SINE MIR -48 214 21 231 36 0 0 chr9 56995533 56995561 -60867066 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1833 120 39 0 chr9 56996015 56996274 -60866353 + AluSx SINE Alu 5 273 -39 261 0 0 0 chr9 56996274 56996303 -60866324 + (TC)n Simple_repeat Simple_repeat 1 29 0 273 216 20 20 chr9 56996303 56996405 -60866222 + (TA)n Simple_repeat Simple_repeat 2 103 0 636 69 73 15 chr9 56996425 56996688 -60865939 + (TA)n Simple_repeat Simple_repeat 1 278 0 40 37 0 0 chr9 56996688 56996742 -60865885 + AT_rich Low_complexity Low_complexity 1 54 0 556 10 127 0 chr9 56996742 56996947 -60865680 + (TA)n Simple_repeat Simple_repeat 1 231 0 428 117 0 0 chr9 56996972 56997032 -60865595 - MER20 DNA MER1_type -157 62 3 2299 170 40 40 chr9 56998571 56999010 -60863617 + MLT1D LTR MaLR 1 442 -63 1657 148 32 58 chr9 56999010 56999321 -60863306 + AluJb SINE Alu 1 303 -9 2299 170 40 40 chr9 56999321 56999386 -60863241 + MLT1D LTR MaLR 441 505 0 25 51 0 0 chr9 56999507 56999546 -60863081 + AT_rich Low_complexity Low_complexity 1 39 0 323 294 206 12 chr9 56999576 56999736 -60862891 + MIR SINE MIR 2 192 -70 2321 235 55 4 chr9 56999825 57000386 -60862241 + MLT1G LTR MaLR 1 590 0 370 235 34 8 chr9 57001863 57001982 -60860645 - MER69 DNA AcHobo -24 2502 2381 286 160 20 0 chr9 57002139 57002189 -60860438 - MER69 DNA AcHobo -2475 51 1 238 291 70 12 chr9 57002224 57002310 -60860317 - MIR SINE MIR 0 262 172 27 0 0 0 chr9 57002386 57002413 -60860214 + AT_rich Low_complexity Low_complexity 1 27 0 24 0 0 0 chr9 57002592 57002616 -60860011 + AT_rich Low_complexity Low_complexity 1 24 0 377 264 28 66 chr9 57003564 57003746 -60858881 - MER69A DNA AcHobo 0 177 3 1081 188 26 4 chr9 57004020 57004249 -60858378 + MER96B DNA MER1_type? 2 235 -182 737 287 60 45 chr9 57004814 57005145 -60857482 - L2 LINE L2 -44 3269 2934 276 211 28 14 chr9 57005318 57005389 -60857238 + CT-rich Low_complexity Low_complexity 4 75 0 772 283 30 40 chr9 57005517 57005960 -60856667 - L1MC/D LINE L1 -741 5425 5367 849 209 5 41 chr9 57006027 57006223 -60856404 - MER91B DNA MER1_type -1 189 1 268 265 17 51 chr9 57006656 57006773 -60855854 - MIR SINE MIR -10 252 140 361 336 8 8 chr9 57007286 57007411 -60855216 - MIR3 SINE MIR -14 194 70 197 394 0 40 chr9 57007466 57007565 -60855062 + MIR SINE MIR 36 130 -78 180 0 0 0 chr9 57007619 57007639 -60854988 + (TTA)n Simple_repeat Simple_repeat 2 21 0 228 239 0 55 chr9 57008575 57008684 -60853943 + CT-rich Low_complexity Low_complexity 2 104 0 1488 210 7 7 chr9 57009354 57009654 -60852973 - AluJb SINE Alu -11 301 2 230 279 15 0 chr9 57009859 57009927 -60852700 - MER94 DNA DNA 0 134 66 806 312 76 7 chr9 57010354 57010456 -60852171 + MLT1K LTR MaLR 2 96 -492 613 211 76 53 chr9 57010456 57010627 -60852000 + MER96 DNA MER1_type 1 175 0 806 312 76 7 chr9 57010627 57010944 -60851683 + MLT1K LTR MaLR 96 450 -138 230 222 16 16 chr9 57011052 57011115 -60851512 + MLT1K LTR MaLR 517 579 -9 184 257 29 57 chr9 57011124 57011194 -60851433 - MIR SINE MIR -130 132 65 801 207 0 0 chr9 57011847 57011992 -60850635 - MER5A DNA MER1_type -44 145 1 26 0 0 0 chr9 57013167 57013193 -60849434 + AT_rich Low_complexity Low_complexity 1 26 0 481 289 61 45 chr9 57014376 57014622 -60848005 - L1M4 LINE L1 -2145 4001 3752 49 66 0 0 chr9 57014905 57014996 -60847631 + AT_rich Low_complexity Low_complexity 1 91 0 227 91 0 23 chr9 57015005 57015049 -60847578 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 1966 157 22 35 chr9 57015070 57015439 -60847188 + THE1B LTR MaLR 1 364 0 8015 101 27 2 chr9 57015439 57016603 -60846024 + THE1B-int LTR MaLR 1 1193 -387 23 0 0 0 chr9 57016627 57016650 -60845977 + AT_rich Low_complexity Low_complexity 1 23 0 958 161 52 17 chr9 57016652 57016826 -60845801 + AluJo SINE Alu 84 263 -49 905 236 82 0 chr9 57016845 57017112 -60845515 - L1MD3 LINE L1 -15 7980 7692 284 306 0 54 chr9 57018628 57018739 -60843888 - L2 LINE L2 0 3272 3168 680 202 129 33 chr9 57019190 57019462 -60843165 - L1MC4a LINE L1 -653 7155 6858 498 206 26 39 chr9 57019735 57019890 -60842737 - L1ME2 LINE L1 -10 6154 6002 * 692 169 0 0 chr9 57019880 57020004 -60842623 - L1P4 LINE L1 -484 5681 5558 734 150 68 0 chr9 57020004 57020134 -60842493 + L1PA15 LINE L1 6024 6165 0 1005 246 61 0 chr9 57020165 57020462 -60842165 - L1ME2 LINE L1 -179 5985 5671 223 204 0 56 chr9 57021048 57021102 -60841525 + L2 LINE L2 3261 3311 -2 762 235 18 18 chr9 57021950 57022120 -60840507 + MIR SINE MIR 23 192 -70 437 302 106 6 chr9 57022757 57022936 -60839691 + MIR SINE MIR 60 256 -6 2535 57 0 3 chr9 57027920 57028219 -60834408 - AluY SINE Alu -13 298 1 2492 165 40 22 chr9 57028304 57028800 -60833827 - MLT1D LTR MaLR 0 505 1 185 263 79 61 chr9 57029361 57029475 -60833152 + L2 LINE L2 3186 3301 -12 2142 133 3 0 chr9 57031949 57032251 -60830376 - AluSq SINE Alu -10 303 1 596 314 32 86 chr9 57032335 57032740 -60829887 - L2 LINE L2 -12 3301 2919 407 235 134 8 chr9 57033506 57033625 -60829002 + L2 LINE L2 3180 3313 0 190 287 131 74 chr9 57034562 57034684 -60827943 - L2 LINE L2 -2 3311 3183 193 284 158 71 chr9 57034700 57034883 -60827744 - MIR SINE MIR -12 250 52 330 26 0 0 chr9 57034890 57034929 -60827698 + (TTG)n Simple_repeat Simple_repeat 1 39 0 227 279 36 27 chr9 57035451 57035562 -60827065 - MLT2E LTR ERVL -479 149 38 204 97 0 0 chr9 57038184 57038215 -60824412 + (TGG)n Simple_repeat Simple_repeat 3 33 0 210 118 0 0 chr9 57038798 57038832 -60823795 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 322 145 16 0 chr9 57040560 57040622 -60822005 - L1MB2 LINE L1 -7 6164 6102 207 184 0 0 chr9 57042442 57042480 -60820147 + (TG)n Simple_repeat Simple_repeat 2 39 0 2379 94 48 20 chr9 57042885 57043237 -60819390 - THE1B LTR MaLR 0 364 3 26 0 0 0 chr9 57044566 57044592 -60818035 + AT_rich Low_complexity Low_complexity 1 26 0 563 273 80 6 chr9 57045003 57045179 -60817448 + MIR SINE MIR 12 200 -62 187 100 0 60 chr9 57045508 57045558 -60817069 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 427 99 14 14 chr9 57047184 57047255 -60815372 - MADE1 DNA Mariner 0 80 10 237 259 47 0 chr9 57047340 57047425 -60815202 - L1MC4 LINE L1 -1339 6703 6615 253 273 0 15 chr9 57047426 57047492 -60815135 + (TA)n Simple_repeat Simple_repeat 1 65 0 3099 176 27 0 chr9 57048045 57048592 -60814035 - MER68 LTR ERV1 0 562 1 900 234 183 45 chr9 57049320 57049785 -60812842 + MLT1G LTR MaLR 62 590 0 186 244 33 89 chr9 57051615 57051705 -60810922 + MIR SINE MIR 112 196 -66 687 215 171 84 chr9 57052190 57052571 -60810056 - MLT1H1 LTR MaLR 0 555 142 241 300 100 0 chr9 57053844 57053934 -60808693 + L2 LINE L2 1158 1256 -2058 1832 317 79 33 chr9 57053937 57054242 -60808385 + L2 LINE L2 2067 2356 -957 282 29 0 0 chr9 57054242 57054277 -60808350 + (CA)n Simple_repeat Simple_repeat 2 36 0 1832 317 79 33 chr9 57054277 57055136 -60807491 + L2 LINE L2 2356 3306 -7 23 0 0 0 chr9 57055309 57055332 -60807295 + AT_rich Low_complexity Low_complexity 1 23 0 188 302 85 47 chr9 57056436 57056542 -60806085 + MIR SINE MIR 20 129 -79 185 339 0 0 chr9 57056857 57056913 -60805714 + MIR3 SINE MIR 146 201 -7 213 266 47 16 chr9 57057440 57057504 -60805123 - L2 LINE L2 -21 3292 3227 2184 161 66 12 chr9 57057727 57058137 -60804490 + MSTB1 LTR MaLR 1 432 0 238 331 206 12 chr9 57058206 57058366 -60804261 - MIR3 SINE MIR -2 206 16 218 31 0 31 chr9 57059508 57059540 -60803087 + (CAAAA)n Simple_repeat Simple_repeat 3 33 0 319 283 54 42 chr9 57060715 57060881 -60801746 + MER5A DNA MER1_type 7 174 -15 372 219 181 65 chr9 57061297 57061452 -60801175 + MER97b DNA MER1_type? 4 176 -877 195 377 0 0 chr9 57061537 57061598 -60801029 + L2 LINE L2 3104 3164 -108 21 36 0 0 chr9 57061698 57061726 -60800901 + AT_rich Low_complexity Low_complexity 1 28 0 237 83 0 0 chr9 57061964 57062000 -60800627 + (CA)n Simple_repeat Simple_repeat 2 37 0 336 275 54 40 chr9 57062202 57062351 -60800276 + L1MDa LINE L1 1307 1457 -5083 300 276 50 65 chr9 57062408 57062669 -60799958 + HAL1 LINE L1 1220 1476 -1031 601 192 16 8 chr9 57062901 57063049 -60799578 - L1M3 LINE L1 -600 5580 5428 * 2878 239 43 20 chr9 57063043 57064072 -60798555 - L1M3 LINE L1 -2692 3454 2403 1199 272 107 36 chr9 57064057 57064909 -60797718 - L1MEc LINE L1 -4632 2193 1282 * 217 270 63 0 chr9 57065591 57065654 -60796973 - L2 LINE L2 -8 3305 3239 302 286 105 0 chr9 57066234 57066339 -60796288 + L2 LINE L2 3178 3293 -20 1103 174 64 4 chr9 57066790 57067054 -60795573 + MER33 DNA MER1_type 45 324 0 207 343 37 28 chr9 57067190 57067298 -60795329 - MIR SINE MIR 0 262 154 1754 201 3 35 chr9 57067405 57067773 -60794854 - L1MEc LINE L1 -6185 357 2 227 328 31 0 chr9 57068240 57068304 -60794323 - L3b LINE CR1 -1 1582 1517 388 294 14 7 chr9 57068351 57068494 -60794133 + MER103 DNA DNA 20 163 -3 570 206 109 29 chr9 57068597 57068772 -60793855 + MER53 DNA DNA 1 189 0 2285 113 0 0 chr9 57069038 57069347 -60793280 + AluSg SINE Alu 1 309 -1 804 230 20 15 chr9 57069358 57069558 -60793069 - MIR SINE MIR 0 262 62 2380 158 30 3 chr9 57069706 57070175 -60792452 - L1MC/D LINE L1 -671 5662 5175 717 255 75 74 chr9 57070165 57070315 -60792312 - L1MEc LINE L1 -4806 1590 1442 * 2426 71 10 0 chr9 57070315 57070623 -60792004 - AluY SINE Alu 0 311 1 2162 110 0 20 chr9 57070625 57070926 -60791701 - AluSg SINE Alu -13 297 3 717 255 75 74 chr9 57070926 57071451 -60791176 - L1MEc LINE L1 -4954 1442 911 21 0 0 0 chr9 57071648 57071669 -60790958 + AT_rich Low_complexity Low_complexity 1 21 0 1084 294 84 0 chr9 57071945 57072289 -60790338 + L2 LINE L2 2561 2933 -381 195 327 59 59 chr9 57073777 57073930 -60788697 + MIR SINE MIR 79 231 -31 1025 266 72 53 chr9 57074037 57074525 -60788102 - L1ME3A LINE L1 -12 6158 5662 886 269 22 52 chr9 57074688 57075052 -60787575 - L1MC4 LINE L1 -185 7857 7505 461 277 99 60 chr9 57075059 57075373 -60787254 - L1ME3A LINE L1 -495 5669 5344 1487 206 29 21 chr9 57075470 57075844 -60786783 - L1MB7 LINE L1 0 6682 6306 1008 189 29 0 chr9 57075836 57076128 -60786499 - L1MB7 LINE L1 -705 5971 5671 * 6163 235 49 51 chr9 57076131 57076235 -60786392 - L1MB7 LINE L1 -2585 4059 3956 1364 196 34 93 chr9 57076235 57076297 -60786330 - MLT2D LTR ERVL 0 414 350 297 0 0 0 chr9 57076297 57076330 -60786297 + (TG)n Simple_repeat Simple_repeat 1 33 0 1364 196 34 93 chr9 57076330 57076706 -60785921 - MLT2D LTR ERVL -64 350 2 6163 235 49 51 chr9 57076706 57080605 -60782022 - L1MB7 LINE L1 -2688 3956 27 337 316 93 30 chr9 57080623 57080771 -60781856 - L1MEc LINE L1 -4744 2394 2257 204 40 0 0 chr9 57080771 57080796 -60781831 + (TTG)n Simple_repeat Simple_repeat 3 27 0 337 316 93 30 chr9 57080796 57081204 -60781423 - L1MEc LINE L1 -4881 2257 1767 1422 180 101 13 chr9 57081204 57081520 -60781107 + MER2 DNA MER2_type 1 344 0 337 316 93 30 chr9 57081520 57081775 -60780852 - L1MEc LINE L1 -5371 1767 1530 1915 164 0 0 chr9 57082183 57082476 -60780151 - AluSx SINE Alu -19 293 1 22 0 0 0 chr9 57083234 57083256 -60779371 + AT_rich Low_complexity Low_complexity 1 22 0 315 304 63 47 chr9 57083812 57084003 -60778624 - L1MEc LINE L1 -5324 1535 1342 23 0 0 0 chr9 57084745 57084768 -60777859 + AT_rich Low_complexity Low_complexity 1 23 0 213 279 0 0 chr9 57084838 57084899 -60777728 + (CATATA)n Simple_repeat Simple_repeat 5 65 0 221 163 20 0 chr9 57085309 57085358 -60777269 + (TA)n Simple_repeat Simple_repeat 2 51 0 26 82 0 0 chr9 57085365 57085426 -60777201 + AT_rich Low_complexity Low_complexity 1 61 0 378 332 92 23 chr9 57085683 57085900 -60776727 - MIR SINE MIR -30 232 1 23 0 0 0 chr9 57087063 57087086 -60775541 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr9 57087210 57087247 -60775380 + AT_rich Low_complexity Low_complexity 1 37 0 1527 149 81 48 chr9 57088837 57089132 -60773495 - AluJb SINE Alu -7 305 1 271 327 19 9 chr9 57089374 57089481 -60773146 - MIR SINE MIR -109 153 46 2027 194 70 27 chr9 57089619 57090061 -60772566 + MER21A LTR ERV1 2 462 -469 2532 120 0 8 chr9 57090061 57090420 -60772207 + THE1B LTR MaLR 2 357 -7 2193 165 25 72 chr9 57090419 57090892 -60771735 + MER21A LTR ERV1 474 924 -7 * 266 343 19 53 chr9 57092050 57092212 -60770415 + L2 LINE L2 2557 2712 -602 3163 100 20 0 chr9 57092212 57092652 -60769975 - MLT2A2 LTR ERVL -4 449 1 266 343 19 53 chr9 57092652 57092696 -60769931 + L2 LINE L2 2712 2756 -558 182 289 0 0 chr9 57093186 57093231 -60769396 - L2 LINE L2 0 3313 3269 3181 199 23 29 chr9 57093870 57094572 -60768055 - L1MB3 LINE L1 -53 6130 5433 201 236 36 0 chr9 57094890 57094945 -60767682 + (TTCA)n Simple_repeat Simple_repeat 1 57 0 250 287 62 62 chr9 57096699 57096828 -60765799 + MIR SINE MIR 23 151 -57 880 281 87 40 chr9 57097080 57097504 -60765123 - MLT1J1 LTR MaLR 0 446 3 204 298 84 84 chr9 57098499 57098630 -60763997 - MER5A DNA MER1_type -56 133 3 305 313 82 41 chr9 57098845 57098992 -60763635 - MIR SINE MIR -8 254 102 2172 166 26 5 chr9 57098992 57099371 -60763256 - MSTB LTR MaLR 0 426 40 8290 180 50 9 chr9 57099371 57100957 -60761670 - MSTB-int LTR MaLR 0 1651 1 2294 174 39 10 chr9 57100957 57101371 -60761256 - MSTB LTR MaLR 0 426 1 259 359 106 7 chr9 57101714 57101856 -60760771 - MIR SINE MIR -86 176 21 226 258 0 32 chr9 57102059 57102152 -60760475 + A-rich Low_complexity Low_complexity 1 90 0 288 260 0 0 chr9 57103151 57103224 -60759403 - L1MA10 LINE L1 -7 6327 6255 25 0 0 0 chr9 57103439 57103464 -60759163 + AT_rich Low_complexity Low_complexity 1 25 0 3517 22 0 0 chr9 57103464 57103873 -60758754 - L1PA3 LINE L1 -3 6152 5744 30 59 0 0 chr9 57104735 57104786 -60757841 + AT_rich Low_complexity Low_complexity 1 51 0 326 325 84 30 chr9 57104980 57105149 -60757478 - MIR SINE MIR -44 218 41 1182 151 0 86 chr9 57105504 57105686 -60756941 - AluJo SINE Alu -2 310 153 2459 77 0 0 chr9 57105686 57105997 -60756630 - AluY SINE Alu 0 311 1 1182 151 0 86 chr9 57105997 57106059 -60756568 - AluJo SINE Alu -159 153 87 24 0 0 0 chr9 57106618 57106642 -60755985 + AT_rich Low_complexity Low_complexity 1 24 0 393 81 16 0 chr9 57106702 57106764 -60755863 - MER41B LTR ERV1 -92 543 481 2131 125 0 0 chr9 57106792 57107080 -60755547 - AluSx SINE Alu -24 288 1 199 93 47 23 chr9 57108418 57108452 -60754175 + (TATATG)n Simple_repeat Simple_repeat 4 41 -6 7425 130 35 33 chr9 57108452 57108854 -60753773 + HSMAR2 DNA Mariner 5 405 -897 1585 195 14 17 chr9 57108854 57109151 -60753476 - AluJo SINE Alu -12 300 5 7425 130 35 33 chr9 57109151 57110043 -60752584 + HSMAR2 DNA Mariner 405 1301 -1 199 93 47 23 chr9 57110043 57110051 -60752576 + (TATATG)n Simple_repeat Simple_repeat 41 47 0 186 43 0 0 chr9 57110069 57110092 -60752535 + (CA)n Simple_repeat Simple_repeat 2 24 0 249 209 0 0 chr9 57110094 57110161 -60752466 + (TA)n Simple_repeat Simple_repeat 2 68 0 29 28 0 0 chr9 57110770 57110806 -60751821 + AT_rich Low_complexity Low_complexity 1 36 0 312 308 103 10 chr9 57110836 57111075 -60751552 - L1ME2 LINE L1 -230 5940 5681 653 170 21 112 chr9 57112361 57112404 -60750223 + MER58B DNA MER1_type 167 212 -2208 1929 150 10 7 chr9 57112404 57112710 -60749917 - AluJb SINE Alu 0 312 6 653 170 21 112 chr9 57112710 57112854 -60749773 + MER58B DNA MER1_type 212 337 -4 234 0 0 0 chr9 57113096 57113122 -60749505 + (TCCA)n Simple_repeat Simple_repeat 2 27 0 632 144 0 8 chr9 57113125 57113243 -60749384 + (TA)n Simple_repeat Simple_repeat 1 117 0 1820 181 0 0 chr9 57114475 57114784 -60747843 + AluJo SINE Alu 1 309 -3 268 323 60 15 chr9 57114890 57115023 -60747604 + MIR SINE MIR 13 151 -111 23 0 0 0 chr9 57116539 57116562 -60746065 + AT_rich Low_complexity Low_complexity 1 23 0 33 90 0 0 chr9 57117756 57117845 -60744782 + AT_rich Low_complexity Low_complexity 1 89 0 643 284 74 66 chr9 57117970 57118607 -60744020 - L1MC4 LINE L1 -79 7963 7322 8809 223 48 19 chr9 57118838 57123753 -60738874 + L1MA9 LINE L1 1 6172 -995 530 184 58 0 chr9 57123753 57123856 -60738771 + LTR1B LTR ERV1 2 110 -716 5138 144 40 11 chr9 57123856 57124751 -60737876 + L1MA9 LINE L1 6372 7292 -41 269 350 55 25 chr9 57125135 57125298 -60737329 + MIR SINE MIR 82 249 -13 1490 206 10 7 chr9 57125300 57125592 -60737035 - AluJo SINE Alu -13 299 7 1572 281 72 14 chr9 57127152 57127664 -60734963 - MLT1H LTR MaLR 0 549 8 207 0 0 0 chr9 57127764 57127787 -60734840 + (TAG)n Simple_repeat Simple_repeat 1 23 0 1667 188 7 7 chr9 57127787 57128074 -60734553 - AluJb SINE Alu -25 287 1 2227 65 0 0 chr9 57130760 57131022 -60731605 + AluSx SINE Alu 38 299 -13 395 292 174 7 chr9 57132270 57132414 -60730213 + MER5A DNA MER1_type 14 181 -8 316 207 57 64 chr9 57135702 57135842 -60726785 - MER113 DNA MER1_type? -353 168 30 2229 210 19 16 chr9 57135910 57136436 -60726191 - LTR27 LTR ERV1 0 501 3 1861 160 14 22 chr9 57136570 57136938 -60725689 + MLT1A1 LTR MaLR 1 365 0 21 36 0 0 chr9 57137068 57137096 -60725531 + AT_rich Low_complexity Low_complexity 1 28 0 266 306 107 41 chr9 57137494 57137615 -60725012 - L2 LINE L2 -3 3310 3182 584 260 29 17 chr9 57137723 57137896 -60724731 - MER5B DNA MER1_type 0 178 4 262 295 53 0 chr9 57140160 57140255 -60722372 + MER5B DNA MER1_type 4 103 -75 211 286 95 16 chr9 57140227 57140290 -60722337 - MER5B DNA MER1_type -110 68 1 * 304 365 51 15 chr9 57140294 57140431 -60722196 + MIR SINE MIR 13 154 -108 1507 198 50 7 chr9 57140913 57141086 -60721541 - AluJo SINE Alu -7 305 114 180 0 0 0 chr9 57141086 57141106 -60721521 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1507 198 50 7 chr9 57141106 57141215 -60721412 - AluJo SINE Alu -198 114 11 2459 173 8 36 chr9 57142613 57143110 -60719517 + MER31A LTR ERV1 1 483 -2 310 123 46 0 chr9 57144486 57144551 -60718076 + GA-rich Low_complexity Low_complexity 1 68 0 550 171 198 9 chr9 57144551 57144662 -60717965 + AluJb SINE Alu 5 136 -176 747 331 40 9 chr9 57144736 57145083 -60717544 - LTR16A LTR ERVL -89 361 4 202 341 108 8 chr9 57145326 57145455 -60717172 + MIR3 SINE MIR 44 185 -23 678 238 21 57 chr9 57145657 57145850 -60716777 - MER58A DNA MER1_type -9 215 30 356 270 0 20 chr9 57145909 57146009 -60716618 + MER5A DNA MER1_type 9 106 -83 403 272 0 11 chr9 57146086 57146178 -60716449 - MIR SINE MIR -63 145 55 3856 141 2 2 chr9 57146250 57146867 -60715760 + L1PA13 LINE L1 5547 6163 0 2189 244 29 11 chr9 57148005 57148559 -60714068 + MLT1E3 LTR MaLR 1 564 -60 2239 97 3 13 chr9 57148622 57148931 -60713696 - AluSp SINE Alu -7 306 1 302 327 51 6 chr9 57149003 57149159 -60713468 - L1M4 LINE L1 -5327 1215 1053 663 338 84 45 chr9 57149753 57150458 -60712169 - HAL1 LINE L1 -938 1569 838 1601 125 6 111 chr9 57150859 57151203 -60711424 - MER1B DNA MER1_type -31 308 1 25 0 0 0 chr9 57151990 57152015 -60710612 + AT_rich Low_complexity Low_complexity 1 25 0 2434 144 82 18 chr9 57152227 57152677 -60709950 - L1PA16 LINE L1 -3 6163 5685 311 295 109 32 chr9 57152750 57152793 -60709834 - MER5B DNA MER1_type -10 168 130 2440 113 14 14 chr9 57152793 57153157 -60709470 + THE1B LTR MaLR 1 364 0 311 295 109 32 chr9 57153157 57153269 -60709358 - MER5B DNA MER1_type -48 130 1 221 322 0 0 chr9 57153941 57154000 -60708627 + L2 LINE L2 2724 2782 -532 518 277 112 52 chr9 57154019 57154420 -60708207 + LTR33 LTR ERVL 90 514 -7 1589 178 30 13 chr9 57154905 57155203 -60707424 + AluJo SINE Alu 1 303 -9 2118 112 7 3 chr9 57155554 57155859 -60706768 - AluSx SINE Alu -6 306 1 2266 107 3 3 chr9 57156527 57156837 -60705790 + AluSx SINE Alu 1 310 -2 441 333 14 0 chr9 57158240 57158378 -60704249 - MIR SINE MIR -105 157 18 234 285 16 41 chr9 57158388 57158511 -60704116 + (CATATA)n Simple_repeat Simple_repeat 2 121 0 3327 192 42 35 chr9 57158603 57159375 -60703252 + L1MB8 LINE L1 5402 6178 0 206 298 166 7 chr9 57160267 57160418 -60702209 + MIR SINE MIR 82 256 -6 2135 110 27 3 chr9 57160559 57160851 -60701776 + AluSx SINE Alu 1 299 -13 188 314 67 9 chr9 57161855 57161960 -60700667 - MIR SINE MIR -65 197 87 2303 56 20 23 chr9 57163277 57163581 -60699046 - AluY SINE Alu -8 303 1 207 281 79 45 chr9 57163646 57163735 -60698892 - MIR SINE MIR -65 143 52 536 263 39 0 chr9 57164947 57165103 -60697524 - MER5B DNA MER1_type -2 176 15 22 0 0 0 chr9 57166033 57166055 -60696572 + AT_rich Low_complexity Low_complexity 1 22 0 551 280 56 23 chr9 57166104 57166488 -60696139 - L1MC4a LINE L1 -1876 5932 5414 30 0 0 0 chr9 57166857 57166887 -60695740 + AT_rich Low_complexity Low_complexity 1 30 0 659 286 66 58 chr9 57166922 57167044 -60695583 - L1MEd LINE L1 -4918 1201 1082 1618 177 7 17 chr9 57167044 57167338 -60695289 - AluJo SINE Alu -21 291 1 659 286 66 58 chr9 57167338 57167683 -60694944 - L1MEd LINE L1 -5037 1082 730 961 276 110 35 chr9 57167696 57168498 -60694129 - L1MC4a LINE L1 -1751 4395 3495 * 3774 206 42 25 chr9 57168494 57169716 -60692911 - L1MB7 LINE L1 0 6184 4935 1735 229 73 59 chr9 57169731 57170413 -60692214 + L1ME2 LINE L1 5471 6162 -2 184 227 45 0 chr9 57171144 57171188 -60691439 - L2 LINE L2 -1 3312 3267 1603 159 60 36 chr9 57171222 57171586 -60691041 + THE1C LTR MaLR 3 375 0 2289 123 0 0 chr9 57172051 57172361 -60690266 + AluSg SINE Alu 1 310 0 1059 91 0 0 chr9 57172421 57172553 -60690074 + AluSg SINE Alu 1 132 -178 2426 65 0 16 chr9 57172555 57172864 -60689763 + AluY SINE Alu 1 304 -7 559 265 6 18 chr9 57173873 57174039 -60688588 - LTR33 LTR ERVL 0 521 358 725 190 9 114 chr9 57174132 57174343 -60688284 - LTR33 LTR ERVL -330 191 3 887 165 5 99 chr9 57174399 57174611 -60688016 + MER20 DNA MER1_type 16 207 -12 216 338 54 34 chr9 57174724 57174928 -60687699 - L2 LINE L2 -219 3053 2846 728 237 88 26 chr9 57175170 57175398 -60687229 + MIR SINE MIR 14 255 -7 207 0 0 0 chr9 57175421 57175444 -60687183 + (TTG)n Simple_repeat Simple_repeat 2 24 0 923 273 9 0 chr9 57175454 57175674 -60686953 + MER58A DNA MER1_type 2 223 -1 406 286 181 9 chr9 57176445 57176655 -60685972 - MIR SINE MIR -1 261 16 14670 136 27 2 chr9 57176987 57179348 -60683279 - Tigger1 DNA MER2_type 0 2418 1 768 207 37 6 chr9 57179348 57179512 -60683115 - L1M3 LINE L1 -394 6022 5854 756 242 61 65 chr9 57179511 57179688 -60682939 - L1M3 LINE L1 -2283 4099 3922 * 1755 193 0 22 chr9 57179688 57180004 -60682623 - AluJb SINE Alu -3 309 1 756 242 61 65 chr9 57180004 57180119 -60682508 - L1M3 LINE L1 -2460 3922 3808 * 2269 224 20 27 chr9 57180112 57180379 -60682248 - L1M3 LINE L1 -4603 1781 1514 2327 143 14 3 chr9 57180379 57180750 -60681877 - THE1C LTR MaLR 0 375 1 2269 224 20 27 chr9 57180750 57181081 -60681546 - L1M3 LINE L1 -4870 1514 1187 496 273 14 25 chr9 57181081 57181277 -60681350 - L1M3 LINE L1 -5035 1271 777 2718 229 61 16 chr9 57183052 57183693 -60678934 + L1M1 LINE L1 15 684 -6881 4209 152 5 35 chr9 57183705 57184455 -60678172 - L1P LINE L1 -5090 1056 329 33585 43 2 2 chr9 57184458 57189448 -60673179 + L1PA4 LINE L1 1164 6155 0 779 178 76 27 chr9 57189481 57189666 -60672961 + MLT1A1 LTR MaLR 168 361 -4 483 134 0 0 chr9 57189667 57189749 -60672878 + (TAGA)n Simple_repeat Simple_repeat 4 85 0 311 306 0 0 chr9 57190000 57190085 -60672542 + L1MC4 LINE L1 6619 6703 -1339 296 256 23 0 chr9 57190095 57190181 -60672446 - L1MC4 LINE L1 -1341 6701 6614 216 111 0 0 chr9 57190181 57190217 -60672410 + (TA)n Simple_repeat Simple_repeat 2 37 0 245 232 105 0 chr9 57190218 57190313 -60672314 + L1MC4 LINE L1 6615 6719 -1323 * 247 267 0 11 chr9 57190238 57190328 -60672299 - L1MC4 LINE L1 -1340 6702 6614 233 182 0 15 chr9 57190354 57190420 -60672207 + (TA)n Simple_repeat Simple_repeat 1 65 0 326 264 35 0 chr9 57190433 57190520 -60672107 + L1MC4 LINE L1 6614 6703 -1339 414 0 0 0 chr9 57190541 57190587 -60672040 + (CA)n Simple_repeat Simple_repeat 2 47 0 2532 59 3 0 chr9 57191513 57191819 -60670808 - AluY SINE Alu -4 307 1 479 372 39 4 chr9 57191819 57192053 -60670574 + MIR SINE MIR 21 262 0 2375 129 8 6 chr9 57192267 57192630 -60669997 + THE1B LTR MaLR 1 364 0 183 265 122 31 chr9 57193084 57193182 -60669445 + MER5A DNA MER1_type 61 167 -22 * 199 288 38 25 chr9 57193110 57193190 -60669437 - MER5A DNA MER1_type -83 106 26 1292 205 24 14 chr9 57193927 57194220 -60668407 + AluJb SINE Alu 3 298 -14 535 322 28 19 chr9 57194517 57194728 -60667899 - MIR SINE MIR -10 252 40 829 222 6 0 chr9 57195308 57195479 -60667148 - MLT1D LTR MaLR -6 499 328 241 218 0 0 chr9 57196365 57196420 -60666207 - L1MC4 LINE L1 -2399 5409 5355 637 316 106 29 chr9 57196727 57197275 -60665352 + L1MC4a LINE L1 5313 5902 -1906 1743 150 0 8 chr9 57197521 57197781 -60664846 + AluSx SINE Alu 39 296 -16 21 0 0 0 chr9 57197767 57197788 -60664839 + AT_rich Low_complexity Low_complexity 1 21 0 1387 186 18 28 chr9 57197835 57198120 -60664507 + AluJb SINE Alu 2 283 -29 274 276 26 0 chr9 57198191 57198307 -60664320 + (TA)n Simple_repeat Simple_repeat 2 120 0 266 178 0 0 chr9 57198525 57198570 -60664057 + AluJo SINE Alu 85 129 -173 363 221 0 0 chr9 57198570 57198656 -60663971 + (CATATA)n Simple_repeat Simple_repeat 5 90 0 749 168 8 8 chr9 57198661 57198786 -60663841 + AluJo SINE Alu 134 258 -54 726 243 27 62 chr9 57200385 57200476 -60662151 - MER46C DNA MER2_type -13 325 232 210 118 0 0 chr9 57200476 57200510 -60662117 + (CA)n Simple_repeat Simple_repeat 1 34 0 726 243 27 62 chr9 57200510 57200755 -60661872 - MER46C DNA MER2_type -106 232 1 2222 95 3 13 chr9 57200995 57201300 -60661327 + AluSp SINE Alu 1 302 -11 21 0 0 0 chr9 57201730 57201751 -60660876 + AT_rich Low_complexity Low_complexity 1 21 0 316 320 56 24 chr9 57202345 57202470 -60660157 + MIR3 SINE MIR 64 192 -16 3610 45 5 2 chr9 57204537 57204984 -60657643 + LTR7 LTR ERV1 1 448 -2 19029 85 12 42 chr9 57204986 57208072 -60654555 + HERVH LTR ERV1 1 2995 -4718 869 140 7 0 chr9 57208051 57208201 -60654426 + HERVH LTR ERV1 3140 3290 -4423 * 3243 113 0 6 chr9 57208191 57208696 -60653931 + HERVH LTR ERV1 3492 3993 -3720 4142 141 1 1 chr9 57208698 57209360 -60653267 + HERVH LTR ERV1 4488 5149 -2564 1307 139 19 0 chr9 57209361 57209577 -60653050 + HERVH LTR ERV1 5600 5819 -1894 2388 74 48 13 chr9 57209577 57209954 -60652673 + HERVH LTR ERV1 7324 7713 0 3380 48 30 5 chr9 57209954 57210391 -60652236 + LTR7 LTR ERV1 1 448 -2 314 303 32 43 chr9 57210632 57210820 -60651807 + L2 LINE L2 2090 2275 -1039 481 314 184 14 chr9 57210826 57210937 -60651690 - L2 LINE L2 -720 2594 2503 1637 180 0 63 chr9 57210937 57211253 -60651374 + AluJb SINE Alu 1 296 -16 481 314 184 14 chr9 57211253 57211510 -60651117 - L2 LINE L2 -811 2503 2163 413 283 187 0 chr9 57213105 57213324 -60649303 + MIR SINE MIR 3 262 0 182 305 182 59 chr9 57214383 57214586 -60648041 - L2 LINE L2 0 3272 3045 235 358 17 52 chr9 57214851 57215083 -60647544 - MIR SINE MIR -37 225 2 238 248 33 48 chr9 57215977 57216162 -60646465 + L1P5 LINE L1 5265 5450 -701 9401 195 12 14 chr9 57216204 57216837 -60645790 - L1PA16 LINE L1 -14 6152 5519 2117 125 143 8 chr9 57216837 57217214 -60645413 + MSTA LTR MaLR 1 428 0 9401 195 12 14 chr9 57217214 57219764 -60642863 - L1PA16 LINE L1 -647 5519 2981 385 320 47 23 chr9 57219812 57219984 -60642643 + L1ME LINE L1 5512 5687 -434 430 284 25 31 chr9 57220042 57220204 -60642423 - MIR SINE MIR -81 181 21 918 225 26 69 chr9 57220746 57221093 -60641534 + MLT1D LTR MaLR 1 332 -173 5126 177 25 13 chr9 57221105 57222149 -60640478 + L1MC1 LINE L1 5260 6315 -18 256 77 39 0 chr9 57222152 57222204 -60640423 + (TA)n Simple_repeat Simple_repeat 1 54 0 225 0 0 0 chr9 57222203 57222228 -60640399 + (CA)n Simple_repeat Simple_repeat 2 26 0 * 262 346 51 60 chr9 57222483 57222700 -60639927 + L2 LINE L2 2763 2977 -337 473 311 82 10 chr9 57222978 57223174 -60639453 + MIR SINE MIR 2 211 -51 430 327 168 7 chr9 57223206 57223509 -60639118 - L2 LINE L2 -949 2365 2014 22 0 0 0 chr9 57223823 57223845 -60638782 + AT_rich Low_complexity Low_complexity 1 22 0 207 208 21 21 chr9 57226468 57226516 -60636111 + L2 LINE L2 3265 3312 -1 186 43 0 0 chr9 57226743 57226766 -60635861 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2162 130 0 7 chr9 57228263 57228564 -60634063 - AluSx SINE Alu -13 299 1 373 240 50 10 chr9 57229002 57229102 -60633525 + MLT1H LTR MaLR 106 209 -340 869 150 0 21 chr9 57229119 57229259 -60633368 - FLAM_C SINE Alu -6 137 1 325 65 0 0 chr9 57229468 57229514 -60633113 + MADE1 DNA Mariner 35 80 0 2053 117 7 0 chr9 57229704 57230009 -60632618 - AluSx SINE Alu 0 307 1 210 320 32 72 chr9 57230269 57230394 -60632233 + MIR SINE MIR 23 142 -66 650 348 23 8 chr9 57230735 57230991 -60631636 + MER115 DNA AcHobo 11 270 -423 3467 231 35 61 chr9 57231110 57232175 -60630452 + MER45B DNA AcHobo 5 1040 0 368 256 74 23 chr9 57232243 57232419 -60630208 + MER115 DNA AcHobo 509 693 0 539 219 39 8 chr9 57233130 57233258 -60629369 + MER94 DNA DNA 3 134 0 427 385 41 0 chr9 57233447 57233616 -60629011 - MER91A DNA MER1_type -20 176 1 403 315 77 58 chr9 57233927 57234187 -60628440 + HAL1 LINE L1 1405 1669 -838 216 0 0 0 chr9 57234230 57234254 -60628373 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 252 286 108 5 chr9 57234605 57234790 -60627837 + L1MDa LINE L1 2445 2648 -3892 30 0 0 0 chr9 57234807 57234837 -60627790 + AT_rich Low_complexity Low_complexity 1 30 0 6810 148 65 5 chr9 57234865 57236109 -60626518 - Tigger1 DNA MER2_type -1 2417 1099 1537 198 62 0 chr9 57236113 57236451 -60626176 - MSTB1 LTR MaLR 0 432 74 6155 137 19 3 chr9 57236480 57237507 -60625120 - Tigger1 DNA MER2_type -1318 1100 58 640 294 116 79 chr9 57237602 57237717 -60624910 + L1MDa LINE L1 2811 2920 -3620 180 111 0 0 chr9 57237717 57237744 -60624883 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1383 198 60 8 chr9 57237747 57238015 -60624612 - AluJo SINE Alu -30 282 1 640 294 116 79 chr9 57238015 57239017 -60623610 + L1MDa LINE L1 2921 3885 -2655 288 77 0 0 chr9 57239017 57239056 -60623571 + (CA)n Simple_repeat Simple_repeat 2 40 0 640 294 116 79 chr9 57239056 57239223 -60623404 + L1MDa LINE L1 3885 4044 -2496 2248 127 0 0 chr9 57239223 57239531 -60623096 - AluSc SINE Alu -1 308 1 640 294 116 79 chr9 57239531 57240376 -60622251 + L1MDa LINE L1 4044 5024 -1516 22 0 0 0 chr9 57240413 57240435 -60622192 + AT_rich Low_complexity Low_complexity 1 22 0 658 235 49 12 chr9 57240484 57240727 -60621900 - Charlie5 DNA MER1_type -29 2583 2332 460 339 44 32 chr9 57240816 57241158 -60621469 + L1MDa LINE L1 5277 5622 -918 219 317 67 79 chr9 57242422 57242586 -60620041 - MER5B DNA MER1_type -16 162 1 268 315 105 25 chr9 57242782 57242944 -60619683 - MIR3 SINE MIR -18 190 16 232 298 193 17 chr9 57242982 57243163 -60619464 + MIR SINE MIR 49 261 -1 22 0 0 0 chr9 57243605 57243627 -60619000 + AT_rich Low_complexity Low_complexity 1 22 0 1092 186 0 11 chr9 57243776 57243953 -60618674 - AluJo SINE Alu 0 312 138 1562 158 7 18 chr9 57243953 57244232 -60618395 - MSTA LTR MaLR 0 428 153 657 169 0 17 chr9 57244235 57244353 -60618274 + FRAM SINE Alu 55 170 -6 660 145 57 8 chr9 57244429 57244553 -60618074 - MSTA LTR MaLR -296 130 1 9190 172 12 4 chr9 57244554 57246190 -60616437 - MSTB-int LTR MaLR -1 1650 1 2054 190 59 10 chr9 57246190 57246596 -60616031 - MSTB LTR MaLR 0 426 1 522 242 106 30 chr9 57246596 57246728 -60615899 - AluJo SINE Alu -170 142 1 1185 187 23 104 chr9 57246801 57247196 -60615431 + L1MB5 LINE L1 5804 6166 -8 1048 180 6 16 chr9 57248202 57248385 -60614242 + AluJo SINE Alu 112 292 -20 205 229 14 14 chr9 57248405 57248475 -60614152 + (TA)n Simple_repeat Simple_repeat 1 70 0 2042 174 50 138 chr9 57248578 57249332 -60613295 + LTR8A LTR ERV1 37 727 0 415 263 17 17 chr9 57249452 57249631 -60612996 + (TA)n Simple_repeat Simple_repeat 1 179 0 339 238 67 49 chr9 57249682 57249846 -60612781 - L1ME4a LINE L1 -259 5862 5696 490 202 20 0 chr9 57250040 57250139 -60612488 - MER58 DNA MER1_type -2 2418 2318 366 244 58 0 chr9 57250160 57250246 -60612381 - MER58 DNA MER1_type -124 91 1 956 302 119 15 chr9 57250272 57250799 -60611828 + L1MEd LINE L1 260 841 -5278 280 111 37 37 chr9 57250810 57250918 -60611709 + (TA)n Simple_repeat Simple_repeat 1 108 0 237 176 54 0 chr9 57250930 57251004 -60611623 + (TA)n Simple_repeat Simple_repeat 1 78 0 * 242 201 14 69 chr9 57250977 57251121 -60611506 + (TATAA)n Simple_repeat Simple_repeat 4 139 0 * 257 207 23 35 chr9 57251085 57251172 -60611455 + (TA)n Simple_repeat Simple_repeat 1 86 0 304 292 23 46 chr9 57251181 57251311 -60611316 + L1MEd LINE L1 872 998 -5121 485 122 0 0 chr9 57251668 57251742 -60610885 + AluY SINE Alu 1 74 -237 1456 126 0 9 chr9 57251742 57251965 -60610662 - pTR5 LTR ERV1 -2046 392 172 359 204 31 20 chr9 57251968 57252066 -60610561 - LTR30 LTR ERV1 -80 642 544 4174 130 78 39 chr9 57252070 57253102 -60609525 - pTR5 LTR ERV1 -417 2021 743 1550 77 67 5 chr9 57253102 57253311 -60609316 + AluY SINE Alu 71 292 -19 707 175 0 35 chr9 57253337 57253480 -60609147 + FLAM_C SINE Alu 6 143 0 311 167 0 0 chr9 57253498 57253558 -60609069 + Alu SINE Alu 243 302 0 518 307 101 20 chr9 57253570 57254173 -60608454 + L1 LINE L1 3081 3732 -2414 392 351 37 37 chr9 57254325 57254567 -60608060 - MIR SINE MIR -1 261 20 2270 111 0 0 chr9 57254603 57254909 -60607718 + AluSg SINE Alu 1 306 -4 1405 216 51 7 chr9 57255137 57255433 -60607194 - AluJo SINE Alu -3 309 1 21 36 0 0 chr9 57255619 57255647 -60606980 + AT_rich Low_complexity Low_complexity 1 28 0 306 285 76 29 chr9 57255656 57255828 -60606799 + L1 LINE L1 3832 4011 -2135 2070 154 95 3 chr9 57255854 57256244 -60606383 - MSTA LTR MaLR -2 426 1 1718 185 7 3 chr9 57256332 57256634 -60605993 + AluJb SINE Alu 5 307 -5 245 274 0 0 chr9 57256708 57256770 -60605857 - L1ME LINE L1 -322 5799 5738 743 219 41 30 chr9 57256847 57257016 -60605611 - AluJ SINE Alu -7 305 135 285 29 0 0 chr9 57257019 57257053 -60605574 + (TG)n Simple_repeat Simple_repeat 1 34 0 225 94 0 0 chr9 57257054 57257086 -60605541 + (TA)n Simple_repeat Simple_repeat 2 33 0 227 250 23 0 chr9 57257158 57257246 -60605381 + L1MC4 LINE L1 6614 6703 -1339 741 188 0 8 chr9 57257273 57257401 -60605226 - AluJ SINE Alu -175 127 1 195 293 274 9 chr9 57258589 57258695 -60603932 + MIR SINE MIR 53 186 -76 1773 179 56 23 chr9 57258827 57259263 -60603364 + MLT1B LTR MaLR 1 390 0 23 33 0 0 chr9 57259523 57259553 -60603074 + AT_rich Low_complexity Low_complexity 1 30 0 491 292 7 16 chr9 57260034 57260187 -60602440 + MIR SINE MIR 6 154 -65 24 32 0 0 chr9 57260704 57260735 -60601892 + AT_rich Low_complexity Low_complexity 1 31 0 369 206 47 28 chr9 57261503 57261610 -60601017 + MLT1G LTR MaLR 454 562 -28 189 74 0 0 chr9 57261959 57261986 -60600641 + (GA)n Simple_repeat Simple_repeat 2 28 0 2163 137 30 30 chr9 57262736 57263100 -60599527 + THE1B LTR MaLR 1 364 0 23 0 0 0 chr9 57265697 57265720 -60596907 + AT_rich Low_complexity Low_complexity 1 23 0 2738 16 0 19 chr9 57266132 57266448 -60596179 - AluY SINE Alu -1 310 1 471 296 74 11 chr9 57266868 57267044 -60595583 + L2 LINE L2 2952 3138 -175 297 261 0 0 chr9 57267055 57267120 -60595507 + L2 LINE L2 3249 3313 0 1928 155 0 0 chr9 57267757 57268054 -60594573 - AluSx SINE Alu -15 297 1 224 294 44 0 chr9 57268120 57268188 -60594439 + L2 LINE L2 3181 3251 -21 243 272 18 26 chr9 57268448 57268562 -60594065 - L1MEc LINE L1 -4145 2251 2139 951 328 84 27 chr9 57268748 57269416 -60593211 - L1MEc LINE L1 -5580 816 111 2358 60 3 3 chr9 57269433 57269731 -60592896 + AluY SINE Alu 1 298 -13 835 287 65 52 chr9 57269763 57270438 -60592189 - L1ME LINE L1 -3037 3369 2678 1507 186 123 38 chr9 57270438 57270803 -60591824 + MSTD LTR MaLR 1 396 0 835 287 65 52 chr9 57270803 57270998 -60591629 - L1ME LINE L1 -3728 2678 2487 23 33 0 0 chr9 57271217 57271247 -60591380 + AT_rich Low_complexity Low_complexity 1 30 0 330 287 80 41 chr9 57271693 57271987 -60590640 - L1ME LINE L1 -4854 1552 1250 488 264 94 44 chr9 57272080 57272407 -60590220 - L1ME LINE L1 -5147 1262 927 348 206 92 15 chr9 57272445 57272576 -60590051 - MER69 DNA AcHobo -124 2402 2262 240 208 42 0 chr9 57272630 57272702 -60589925 + (TA)n Simple_repeat Simple_repeat 2 76 0 236 224 130 31 chr9 57272704 57272865 -60589762 - MER69 DNA AcHobo -349 2177 2001 207 0 0 0 chr9 57272924 57272947 -60589680 + (CA)n Simple_repeat Simple_repeat 2 24 0 1885 287 79 15 chr9 57272958 57273575 -60589052 - MER69 DNA AcHobo -1866 660 4 657 303 21 17 chr9 57273787 57274025 -60588602 - MIR SINE MIR -10 252 14 22 56 0 0 chr9 57275120 57275156 -60587471 + AT_rich Low_complexity Low_complexity 1 36 0 349 79 16 16 chr9 57275515 57275578 -60587049 + (TTTTC)n Simple_repeat Simple_repeat 2 64 0 749 241 17 6 chr9 57276230 57276404 -60586223 + MER5B DNA MER1_type 2 177 -1 1609 305 58 26 chr9 57276527 57277143 -60585484 + L1MA6 LINE L1 1 636 -6153 3331 262 36 57 chr9 57277427 57278472 -60584155 + L1MA6 LINE L1 1226 1939 -4849 593 139 0 0 chr9 57278472 57278558 -60584069 + AluJb SINE Alu 208 293 -19 3331 262 36 57 chr9 57278558 57279628 -60582999 + L1MA6 LINE L1 1939 3029 -3759 7282 197 74 13 chr9 57279672 57281252 -60581375 + MER52A LTR ERV1 1 1749 -6 8071 201 54 10 chr9 57281253 57283152 -60579475 + L1MA6 LINE L1 3038 5020 -1768 4354 171 44 55 chr9 57283151 57284208 -60578419 + L1MA6 LINE L1 5564 6598 -344 * 219 36 0 0 chr9 57284208 57284236 -60578391 + (TA)n Simple_repeat Simple_repeat 2 29 0 4354 171 44 55 chr9 57284236 57284573 -60578054 + L1MA6 LINE L1 6598 6937 -5 826 228 18 0 chr9 57284726 57284897 -60577730 + MER5A DNA MER1_type 3 176 -13 790 182 65 53 chr9 57285295 57285465 -60577162 - MER5B DNA MER1_type -6 172 1 3270 149 21 11 chr9 57285664 57286186 -60576441 + MER1A DNA MER1_type 1 527 0 651 251 121 21 chr9 57286511 57286702 -60575925 - L1MD2 LINE L1 -3 7992 6158 1501 237 46 48 chr9 57286965 57287463 -60575164 - MLT1D LTR MaLR -8 497 1 211 293 17 0 chr9 57287470 57287528 -60575099 + MIR SINE MIR 82 140 -122 2521 50 0 3 chr9 57287684 57287984 -60574643 + AluY SINE Alu 1 299 -12 379 224 60 14 chr9 57288265 57288367 -60574260 - MER5B DNA MER1_type -2 176 71 267 267 50 111 chr9 57288890 57288966 -60573661 - MIR3 SINE MIR -13 195 116 1602 209 50 30 chr9 57288966 57289368 -60573259 + MLT2D LTR ERVL 5 414 0 267 267 50 111 chr9 57289368 57289471 -60573156 - MIR3 SINE MIR -92 116 27 1032 214 33 0 chr9 57289491 57289706 -60572921 + MER58A DNA MER1_type 3 224 0 21 36 0 0 chr9 57290338 57290366 -60572261 + AT_rich Low_complexity Low_complexity 1 28 0 628 289 39 35 chr9 57290843 57291099 -60571528 + MIR SINE MIR 5 261 -1 1552 258 87 22 chr9 57291268 57291718 -60570909 - MLT1G LTR MaLR 0 590 112 821 231 89 10 chr9 57291719 57291922 -60570705 - MER58A DNA MER1_type 0 224 6 328 336 9 0 chr9 57291924 57292034 -60570593 - MLT1G LTR MaLR -470 120 10 236 169 68 0 chr9 57292255 57292314 -60570313 + T-rich Low_complexity Low_complexity 5 67 0 825 113 0 23 chr9 57292316 57292449 -60570178 - L1PA16 LINE L1 -3 6866 6737 299 85 21 0 chr9 57292450 57292497 -60570130 + (TA)n Simple_repeat Simple_repeat 2 49 0 254 109 0 0 chr9 57292497 57292543 -60570084 + LTR66 LTR ERVL 394 439 -171 321 169 0 0 chr9 57292543 57292602 -60570025 + (TA)n Simple_repeat Simple_repeat 1 59 0 1881 116 48 0 chr9 57292602 57292870 -60569757 - AluSc SINE Alu -23 286 6 14265 184 24 85 chr9 57292874 57297552 -60565075 - L1PA16 LINE L1 -126 6743 1779 1742 145 103 0 chr9 57297552 57297814 -60564813 - AluSx SINE Alu -17 295 7 14265 184 24 85 chr9 57297814 57299603 -60563024 - L1PA16 LINE L1 -5090 1779 714 342 0 0 0 chr9 57299603 57299641 -60562986 + (CA)n Simple_repeat Simple_repeat 2 39 0 14265 184 24 85 chr9 57299641 57300307 -60562320 - L1PA16 LINE L1 -6155 714 9 203 383 0 21 chr9 57300542 57300636 -60561991 - MIR SINE MIR -98 110 19 244 328 40 56 chr9 57301900 57302025 -60560602 + L2 LINE L2 3150 3272 0 209 357 110 13 chr9 57303691 57303845 -60558782 - L2 LINE L2 -2814 500 332 2161 118 3 0 chr9 57303893 57304190 -60558437 + AluSg SINE Alu 10 307 -3 364 215 7 126 chr9 57304426 57304561 -60558066 - L2 LINE L2 0 3313 3195 3539 183 40 16 chr9 57304670 57305904 -60556723 + L1P3 LINE L1 1 1141 -4734 8675 89 21 1 chr9 57305911 57307898 -60554729 + L1PA8 LINE L1 4148 6158 -14 1002 270 6 22 chr9 57308397 57308715 -60553912 - L1ME2 LINE L1 -9 6155 5843 847 192 65 103 chr9 57309171 57309553 -60553074 - MLT1A1 LTR MaLR -2 363 1 198 143 0 0 chr9 57309757 57309792 -60552835 + (TCCC)n Simple_repeat Simple_repeat 2 36 0 243 303 50 34 chr9 57310775 57310894 -60551733 - MIR3 SINE MIR -2 206 86 3341 200 24 53 chr9 57311545 57311871 -60550756 - L1MB3 LINE L1 -174 6245 5911 1743 135 88 0 chr9 57311871 57312145 -60550482 + AluSq SINE Alu 1 298 -15 3341 200 24 53 chr9 57312145 57312842 -60549785 - L1MB3 LINE L1 -508 5911 5277 2194 108 6 10 chr9 57312842 57313156 -60549471 - AluSp SINE Alu 0 313 1 3341 200 24 53 chr9 57313156 57313635 -60548992 - L1MB3 LINE L1 -1142 5277 4786 1609 180 26 15 chr9 57313637 57314098 -60548529 - L1MB3 LINE L1 -3782 2600 2133 34 24 0 0 chr9 57314102 57314143 -60548484 + AT_rich Low_complexity Low_complexity 1 41 0 3198 205 60 53 chr9 57314149 57314464 -60548163 - L1MB3 LINE L1 -5431 953 642 2374 78 0 3 chr9 57314464 57314760 -60547867 + AluY SINE Alu 1 295 -16 3198 205 60 53 chr9 57314760 57315277 -60547350 - L1MB3 LINE L1 -5742 642 115 430 265 0 10 chr9 57315279 57315377 -60547250 - Tigger7 DNA MER2_type 0 2487 2391 * 1197 204 113 0 chr9 57315375 57315615 -60547012 - Tigger7 DNA MER2_type -466 267 1 610 182 27 0 chr9 57315615 57315725 -60546902 - L1MB3 LINE L1 -6270 114 2 380 243 50 43 chr9 57315979 57316119 -60546508 - L3 LINE CR1 -797 780 640 22 35 0 0 chr9 57316167 57316196 -60546431 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr9 57316768 57316792 -60545835 + AT_rich Low_complexity Low_complexity 1 24 0 661 218 103 0 chr9 57317456 57317630 -60544997 - MER3 DNA MER1_type -17 192 1 311 242 0 0 chr9 57317646 57317708 -60544919 - MIR SINE MIR -68 140 79 2299 21 3 0 chr9 57317823 57318152 -60544475 - L1P1 LINE L1 -704 5451 5122 * 6294 10 0 0 chr9 57318151 57318859 -60543768 + L1HS LINE L1 5448 6155 0 2246 178 43 5 chr9 57320283 57320699 -60541928 - MSTB1 LTR MaLR 0 432 1 1404 225 83 49 chr9 57321687 57322132 -60540495 + MLT1D LTR MaLR 22 481 -24 610 212 84 34 chr9 57322158 57322337 -60540290 - MLT1F1 LTR MaLR -1 566 379 2034 275 81 19 chr9 57322816 57323622 -60539005 - L1ME3A LINE L1 -11 6159 5304 32 26 0 0 chr9 57323626 57323665 -60538962 + AT_rich Low_complexity Low_complexity 1 39 0 219 88 0 0 chr9 57323672 57323706 -60538921 + (GA)n Simple_repeat Simple_repeat 2 35 0 1656 276 80 44 chr9 57323756 57324983 -60537644 - L1ME3A LINE L1 -984 5162 3892 * 11230 220 54 26 chr9 57324982 57331100 -60531527 + L1MA9 LINE L1 970 6862 -36 2419 83 3 0 chr9 57331703 57332005 -60530622 - AluSp SINE Alu -10 303 1 1400 146 0 78 chr9 57333951 57334219 -60528408 - AluJo SINE Alu -63 249 3 817 289 131 12 chr9 57334243 57334660 -60527967 + LTR33A LTR ERVL 76 515 -8 2458 114 3 11 chr9 57335022 57335389 -60527238 - L1PA16 LINE L1 -9 6157 5794 821 171 7 7 chr9 57335390 57335536 -60527091 + L1PA16 LINE L1 5627 5772 -394 1553 200 89 20 chr9 57336197 57336602 -60526025 + MER63B DNA MER1_type 1 433 -3 1559 262 11 68 chr9 57337635 57338180 -60524447 + MLT2B1 LTR ERVL 1 514 -6 2345 135 9 11 chr9 57338460 57338836 -60523791 - THE1B LTR MaLR 0 364 4 273 320 87 10 chr9 57339630 57339733 -60522894 - L2 LINE L2 -5 3267 3157 327 132 0 0 chr9 57339990 57340043 -60522584 - U2 snRNA snRNA -129 59 7 4244 154 24 39 chr9 57340045 57341454 -60521173 + L1MA4 LINE L1 4652 6052 -248 940 206 53 0 chr9 57341578 57341806 -60520821 + L1MA4 LINE L1 6061 6300 0 201 121 0 0 chr9 57342285 57342318 -60520309 + (TA)n Simple_repeat Simple_repeat 2 34 0 2291 54 11 0 chr9 57343881 57344178 -60518449 - AluY SINE Alu 0 300 1 21 89 0 0 chr9 57344351 57344407 -60518220 + AT_rich Low_complexity Low_complexity 1 56 0 320 133 17 0 chr9 57344610 57344670 -60517957 + (TG)n Simple_repeat Simple_repeat 2 62 0 393 206 0 0 chr9 57344830 57344922 -60517705 + CT-rich Low_complexity Low_complexity 4 95 0 27 0 0 0 chr9 57346535 57346562 -60516065 + AT_rich Low_complexity Low_complexity 1 27 0 2087 148 3 0 chr9 57346972 57347269 -60515358 + AluSx SINE Alu 1 298 -14 226 347 41 16 chr9 57347741 57347862 -60514765 - L2 LINE L2 0 3313 3190 344 207 0 0 chr9 57347938 57347996 -60514631 + MER5A DNA MER1_type 13 70 -119 865 254 74 72 chr9 57348001 57348513 -60514114 + HAL1 LINE L1 1263 1775 -732 1098 97 4 0 chr9 57348738 57349037 -60513590 - HSATII Satellite Satellite 0 300 1 968 119 3 19 chr9 57349064 57349386 -60513241 - HSATII Satellite Satellite -17 316 1 1019 128 10 8 chr9 57349402 57350434 -60512193 - HSATII Satellite Satellite 0 1432 281 187 172 69 9 chr9 57350434 57350550 -60512077 + (CGAAT)n Simple_repeat Simple_repeat 4 126 0 1019 128 10 8 chr9 57350550 57350832 -60511795 - HSATII Satellite Satellite -1151 281 1 1110 128 6 9 chr9 57350932 57352456 -60510171 - HSATII Satellite Satellite 0 1519 1 1077 113 11 9 chr9 57352482 57353115 -60509512 - HSATII Satellite Satellite 0 634 1 782 149 6 0 chr9 57353223 57353525 -60509102 - HSATII Satellite Satellite -10 303 1 995 133 7 17 chr9 57353555 57354141 -60508486 - HSATII Satellite Satellite 0 580 1 1001 116 17 19 chr9 57354162 57355389 -60507238 - HSATII Satellite Satellite -8 1223 1 6001 96 30 0 chr9 57355492 57356907 -60505720 + L1PA10 LINE L1 4724 6168 0 556 271 119 64 chr9 57356916 57357293 -60505334 - MER110-int LTR ERV1 -401 4246 3849 914 267 61 90 chr9 57357448 57358138 -60504489 - MER110-int LTR ERV1 -892 3755 3086 419 186 14 0 chr9 57358156 57358226 -60504401 + MLT1D LTR MaLR 8 78 -427 1921 286 33 7 chr9 57358284 57359049 -60503578 - L1MEc LINE L1 -2335 4622 3838 11050 110 14 3 chr9 57359070 57360651 -60501976 - L1P3 LINE L1 -4858 1603 6 579 295 94 65 chr9 57360652 57361099 -60501528 - L1MEc LINE L1 -4200 2938 2479 4061 272 33 60 chr9 57361247 57362285 -60500342 - L1MEc LINE L1 -5349 1510 521 2298 105 0 13 chr9 57362285 57362599 -60500028 + AluSg SINE Alu 1 310 0 4061 272 33 60 chr9 57362599 57363009 -60499618 - L1MEc LINE L1 -6338 521 101 23 0 0 0 chr9 57363868 57363891 -60498736 + AT_rich Low_complexity Low_complexity 1 23 0 1266 105 0 0 chr9 57363896 57364068 -60498559 + AluY SINE Alu 139 310 -1 7627 137 22 3 chr9 57364458 57365542 -60497085 - L1P LINE L1 -1540 4606 3493 195 69 0 0 chr9 57365542 57365571 -60497056 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 7627 137 22 3 chr9 57365571 57365755 -60496872 - L1P LINE L1 -2653 3493 3314 1566 243 97 26 chr9 57366172 57366628 -60495999 + MER110 LTR ERV1 4 491 0 360 353 14 37 chr9 57367082 57367300 -60495327 - L2 LINE L2 -4 3309 3097 566 309 0 17 chr9 57368236 57368414 -60494213 + L1MC/D LINE L1 5453 5627 -2181 7339 38 3 0 chr9 57368585 57369563 -60493064 + L1PA4 LINE L1 5175 6155 0 227 332 98 16 chr9 57369879 57370105 -60492522 - MIR SINE MIR -6 256 19 2113 144 0 3 chr9 57370647 57370959 -60491668 - AluSx SINE Alu -1 311 1 446 329 57 46 chr9 57371168 57371557 -60491070 - L2 LINE L2 0 3313 2921 299 316 44 32 chr9 57371691 57371849 -60490778 - L2 LINE L2 -586 2728 2569 910 302 31 34 chr9 57371940 57372327 -60490300 - MLT1I LTR MaLR -2 407 22 264 336 19 47 chr9 57372786 57372893 -60489734 + L2 LINE L2 3152 3255 -17 22 56 0 0 chr9 57373001 57373037 -60489590 + AT_rich Low_complexity Low_complexity 1 36 0 322 308 58 0 chr9 57373040 57373160 -60489467 - MIR SINE MIR -18 244 118 37 76 0 0 chr9 57373318 57373397 -60489230 + AT_rich Low_complexity Low_complexity 1 79 0 2377 75 0 3 chr9 57373883 57374178 -60488449 + AluY SINE Alu 1 294 -17 1883 246 55 35 chr9 57374183 57374695 -60487932 - L1M4c LINE L1 -5748 636 115 430 265 0 10 chr9 57374697 57374795 -60487832 - Tigger7 DNA MER2_type 0 2487 2391 * 1197 204 113 0 chr9 57374793 57375033 -60487594 - Tigger7 DNA MER2_type -466 267 1 610 182 27 0 chr9 57375033 57375143 -60487484 - L1M4c LINE L1 -6270 114 2 380 243 50 43 chr9 57375397 57375537 -60487090 - L3 LINE CR1 -797 780 640 22 35 0 0 chr9 57375585 57375614 -60487013 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr9 57376186 57376210 -60486417 + AT_rich Low_complexity Low_complexity 1 24 0 661 218 103 0 chr9 57376874 57377048 -60485579 - MER3 DNA MER1_type -17 192 1 311 242 0 0 chr9 57377064 57377126 -60485501 - MIR SINE MIR -68 140 79 2299 21 3 0 chr9 57377241 57377570 -60485057 - L1P1 LINE L1 -704 5451 5122 * 4905 16 0 0 chr9 57377569 57378126 -60484501 + L1HS LINE L1 5448 6004 -151 204 342 13 0 chr9 57378141 57378217 -60484410 - L2 LINE L2 -8 3305 3229 353 239 0 0 chr9 57378319 57378386 -60484241 + MER5A DNA MER1_type 4 70 -119 892 255 70 72 chr9 57378391 57378905 -60483722 + HAL1 LINE L1 1263 1775 -732 332 195 37 0 chr9 57379239 57379321 -60483306 + HAL1 LINE L1 2138 2222 -285 249 196 0 0 chr9 57379321 57379372 -60483255 + (TG)n Simple_repeat Simple_repeat 2 52 0 276 243 95 48 chr9 57379461 57379650 -60482977 + HAL1 LINE L1 2310 2507 0 300 27 0 0 chr9 57380030 57380067 -60482560 + (TG)n Simple_repeat Simple_repeat 2 38 0 21 0 0 0 chr9 57383356 57383377 -60479250 + AT_rich Low_complexity Low_complexity 1 21 0 581 168 48 0 chr9 57384083 57384208 -60478419 - AluSp/q SINE Alu -4 309 179 864 270 79 55 chr9 57384338 57384557 -60478070 - L1MC4a LINE L1 -991 6817 6584 432 55 0 0 chr9 57384557 57384612 -60478015 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 864 270 79 55 chr9 57384612 57384759 -60477868 - L1MC4a LINE L1 -1224 6584 6442 1961 158 0 0 chr9 57385344 57385642 -60476985 - AluSx SINE Alu -14 298 1 207 0 0 0 chr9 57388917 57388940 -60473687 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 182 241 17 35 chr9 57388967 57389025 -60473602 - L2 LINE L2 -34 3238 3182 633 219 67 0 chr9 57390102 57390266 -60472361 - L1MA4 LINE L1 -10 6290 6116 25 0 0 0 chr9 57390510 57390535 -60472092 + AT_rich Low_complexity Low_complexity 1 25 0 287 336 48 8 chr9 57391719 57391844 -60470783 + MIR SINE MIR 64 193 -69 4570 176 36 22 chr9 57393918 57394892 -60467735 + L1MC2 LINE L1 5349 6336 -8 1874 154 29 129 chr9 57394918 57395253 -60467374 + L1MB8 LINE L1 5678 5938 -240 2390 78 3 0 chr9 57395253 57395561 -60467066 + AluY SINE Alu 3 311 0 1874 154 29 129 chr9 57395561 57395776 -60466851 + L1MB8 LINE L1 5938 6173 -5 305 346 68 21 chr9 57395778 57396012 -60466615 + L1MEc LINE L1 938 1182 -5214 2139 130 0 0 chr9 57396840 57397140 -60465487 + AluSx SINE Alu 1 300 -12 848 227 76 4 chr9 57397684 57397922 -60464705 - Tigger6a DNA MER2_type -26 1057 803 8083 210 75 79 chr9 57397922 57400487 -60462140 + L1MC1 LINE L1 22 2616 -3950 4582 227 25 36 chr9 57400482 57400765 -60461862 + L1MC1 LINE L1 3689 3974 -2639 * 1879 126 0 4 chr9 57400765 57401066 -60461561 + AluSq SINE Alu 21 320 0 4582 227 25 36 chr9 57401066 57403763 -60458864 + L1MC1 LINE L1 3974 6612 -1 3196 192 56 13 chr9 57403777 57404559 -60458068 - Tigger6a DNA MER2_type -266 817 2 19428 181 31 24 chr9 57405520 57408221 -60454406 + L1MA3 LINE L1 13 2696 -4869 1668 186 7 3 chr9 57408221 57408506 -60454121 + AluSx SINE Alu 1 286 -26 19428 181 31 24 chr9 57408506 57412184 -60450443 + L1MA3 LINE L1 2696 6440 -1125 6635 61 4 9 chr9 57412200 57413099 -60449528 + L1P LINE L1 2 896 -5250 4186 40 0 0 chr9 57413099 57413604 -60449023 + L1PA3 LINE L1 5651 6155 0 5868 128 49 5 chr9 57413612 57414828 -60447799 + L1MA3 LINE L1 6446 7713 -11 2187 110 7 0 chr9 57415702 57415993 -60446634 - AluSx SINE Alu -19 293 1 222 296 182 23 chr9 57416056 57416188 -60446439 + MIR SINE MIR 11 163 -99 1744 209 111 11 chr9 57416188 57416647 -60445980 + MLT1D LTR MaLR 1 505 0 581 322 15 15 chr9 57417216 57417415 -60445212 + MIR SINE MIR 40 238 -24 198 326 0 0 chr9 57417962 57418011 -60444616 + MIR SINE MIR 47 95 -167 550 335 59 17 chr9 57419228 57419467 -60443160 - MIR SINE MIR -1 261 13 925 114 0 0 chr9 57419930 57420053 -60442574 + AluSc SINE Alu 1 123 -186 635 179 0 8 chr9 57420058 57420181 -60442446 + MLT1A2 LTR MaLR 17 138 -236 1289 87 0 0 chr9 57420182 57420343 -60442284 + AluSc SINE Alu 136 296 -13 484 83 12 24 chr9 57420818 57420902 -60441725 + (TCTA)n Simple_repeat Simple_repeat 2 84 0 717 229 31 49 chr9 57420917 57421140 -60441487 - MLT1A2 LTR MaLR -154 220 2 339 99 28 14 chr9 57421143 57421214 -60441413 + (TCTA)n Simple_repeat Simple_repeat 3 74 0 685 306 66 43 chr9 57421399 57421894 -60440733 + L2 LINE L2 2803 3312 -1 226 322 73 44 chr9 57422048 57422253 -60440374 + L2 LINE L2 2545 2755 -559 190 290 129 32 chr9 57422570 57422694 -60439933 + L2 LINE L2 3165 3300 -13 186 133 0 0 chr9 57426816 57426846 -60435781 + (CTGGGG)n Simple_repeat Simple_repeat 2 31 0 30 45 0 0 chr9 57429082 57429126 -60433501 + AT_rich Low_complexity Low_complexity 1 44 0 31 44 0 0 chr9 57429804 57429849 -60432778 + AT_rich Low_complexity Low_complexity 1 45 0 5041 142 23 0 chr9 57429961 57431259 -60431368 - L1PA16 LINE L1 0 6166 4873 6527 150 7 4 chr9 57431277 57432440 -60430187 + L1P LINE L1 3612 4777 -1369 1076 238 102 47 chr9 57432626 57433097 -60429530 - MLT1D LTR MaLR 0 505 9 22 56 0 0 chr9 57434366 57434402 -60428225 + AT_rich Low_complexity Low_complexity 1 36 0 370 220 33 0 chr9 57435134 57435225 -60427402 - MER45B DNA AcHobo 0 1040 947 1191 231 61 45 chr9 57435230 57435654 -60426973 + MLT1C LTR MaLR 6 436 -31 299 211 0 0 chr9 57435660 57435717 -60426910 - MER2 DNA MER2_type -7 338 282 1042 176 29 0 chr9 57435750 57435954 -60426673 - MER2 DNA MER2_type -135 210 1 1610 195 10 17 chr9 57436004 57436301 -60426326 + AluJo SINE Alu 1 295 -17 198 91 0 0 chr9 57436301 57436334 -60426293 + (TA)n Simple_repeat Simple_repeat 1 33 0 2164 194 34 13 chr9 57436350 57436876 -60425751 - MER45B DNA AcHobo -99 941 328 2203 98 3 0 chr9 57437175 57437460 -60425167 - AluSg SINE Alu -15 295 10 181 364 110 13 chr9 57437508 57437662 -60424965 + L2 LINE L2 332 500 -2814 246 328 40 56 chr9 57439328 57439453 -60423174 - L2 LINE L2 0 3272 3150 2242 102 3 0 chr9 57439932 57440226 -60422401 - AluSg SINE Alu -15 295 1 2313 221 59 57 chr9 57441406 57441453 -60421174 + L1ME1 LINE L1 4795 4840 -1326 8945 38 4 4 chr9 57441453 57442520 -60420107 - MER11C LTR ERVK -4 1067 1 2313 221 59 57 chr9 57442520 57442747 -60419880 + L1ME1 LINE L1 4840 5065 -1101 1938 162 0 25 chr9 57442747 57443061 -60419566 - AluSx SINE Alu -6 306 1 2313 221 59 57 chr9 57443061 57444153 -60418474 + L1ME1 LINE L1 5065 6162 -4 1446 126 36 5 chr9 57444500 57444723 -60417904 - MER30 DNA MER1_type 0 230 1 1460 279 28 36 chr9 57445011 57445080 -60417547 + L1M4 LINE L1 4135 4203 -1943 2375 104 0 0 chr9 57445080 57445388 -60417239 + AluY SINE Alu 1 308 -3 1460 279 28 36 chr9 57445388 57446006 -60416621 + L1M4 LINE L1 4203 4816 -1330 1101 207 82 0 chr9 57446000 57446304 -60416323 + L1MC2 LINE L1 6008 6336 -8 * 444 354 95 39 chr9 57446453 57447054 -60415573 + L2 LINE L2 2565 3198 -74 1056 228 32 35 chr9 57447307 57447645 -60414982 - L1MB8 LINE L1 0 6178 5842 294 29 0 0 chr9 57449766 57449801 -60412826 + (TG)n Simple_repeat Simple_repeat 2 36 0 435 225 189 30 chr9 57451029 57451198 -60411429 + MIR SINE MIR 48 243 -19 1763 220 46 42 chr9 57451573 57452246 -60410381 - L1MA9 LINE L1 -38 6274 5639 322 226 0 0 chr9 57452295 57452357 -60410270 + Tigger2 DNA MER2_type 1 62 -2656 2290 169 45 2 chr9 57452367 57452788 -60409839 + Tigger2 DNA MER2_type 2280 2718 0 3293 219 6 13 chr9 57452790 57453831 -60408796 + L1M2 LINE L1 4576 5607 -705 330 280 221 43 chr9 57454471 57454846 -60407781 - L2 LINE L2 -14 3299 2858 324 0 0 0 chr9 57454892 57454928 -60407699 + (TG)n Simple_repeat Simple_repeat 1 36 0 246 62 0 0 chr9 57454928 57454960 -60407667 + (GA)n Simple_repeat Simple_repeat 2 33 0 746 256 35 0 chr9 57455202 57455405 -60407222 - L1M4 LINE L1 -2277 3869 3660 356 40 20 0 chr9 57455679 57455729 -60406898 + (CA)n Simple_repeat Simple_repeat 1 51 0 1688 283 130 35 chr9 57457844 57458726 -60403901 + L1MCc LINE L1 25 822 -5790 225 0 0 0 chr9 57458726 57458751 -60403876 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1688 283 130 35 chr9 57458751 57459395 -60403232 + L1MCc LINE L1 822 1725 -4887 1760 198 5 25 chr9 57461668 57462036 -60400591 + MLT1A1 LTR MaLR 5 365 0 1479 130 87 20 chr9 57462054 57462308 -60400319 - MSTA LTR MaLR 0 428 158 1563 248 50 19 chr9 57462308 57462469 -60400158 + L1MCc LINE L1 3598 3753 -3188 8721 117 11 19 chr9 57462469 57464601 -60398026 - L1PA8A LINE L1 -3 6128 3991 1563 248 50 19 chr9 57464601 57465056 -60397571 + L1MCc LINE L1 3753 4233 -2708 1153 184 113 47 chr9 57466834 57467230 -60395397 + MER74A LTR ERVL 1 486 -72 1426 222 24 7 chr9 57467230 57467523 -60395104 - AluJo SINE Alu -14 298 1 1153 184 113 47 chr9 57467523 57467601 -60395026 + MER74A LTR ERVL 486 557 -1 768 22 0 0 chr9 57467614 57467704 -60394923 + (TTCC)n Simple_repeat Simple_repeat 3 92 0 470 302 57 37 chr9 57469009 57469254 -60393373 + LTR33 LTR ERVL 42 291 -230 24 32 0 0 chr9 57470059 57470090 -60392537 + AT_rich Low_complexity Low_complexity 1 31 0 386 179 0 0 chr9 57470565 57470632 -60391995 + MLT2B3 LTR ERVL 1 67 -487 1974 218 34 46 chr9 57470899 57471460 -60391167 + MLT2B3 LTR ERVL 1 554 0 443 300 99 82 chr9 57471533 57472242 -60390385 + L1MEc LINE L1 940 1660 -4736 253 272 12 0 chr9 57473450 57473531 -60389096 + L1M4 LINE L1 4520 4601 -1545 26 0 0 0 chr9 57473973 57473999 -60388628 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr9 57474447 57474468 -60388159 + AT_rich Low_complexity Low_complexity 1 21 0 1281 141 70 24 chr9 57474628 57474841 -60387786 - AluSg/x SINE Alu -22 290 68 239 227 78 57 chr9 57475289 57475430 -60387197 - L1MC4 LINE L1 -63 7979 7836 254 273 0 0 chr9 57475457 57475523 -60387104 - L1ME2 LINE L1 -10 6154 6089 2542 56 0 0 chr9 57476369 57476674 -60385953 + AluY SINE Alu 1 305 -6 204 125 0 0 chr9 57478001 57478033 -60384594 + (TA)n Simple_repeat Simple_repeat 1 32 0 193 284 0 30 chr9 57481315 57481382 -60381245 - MIR SINE MIR -50 212 148 194 31 0 62 chr9 57482770 57482802 -60379825 + (TCTA)n Simple_repeat Simple_repeat 3 32 0 698 312 105 23 chr9 57483623 57484053 -60378574 - L2 LINE L2 -25 3288 2824 222 195 0 0 chr9 57485286 57485327 -60377300 + (CA)n Simple_repeat Simple_repeat 2 42 0 346 254 51 51 chr9 57485968 57486106 -60376521 + LTR16C LTR ERVL 345 482 -9 314 305 94 16 chr9 57486363 57486416 -60376211 + L2 LINE L2 3176 3223 -90 228 35 0 0 chr9 57486416 57486445 -60376182 + (TTG)n Simple_repeat Simple_repeat 2 30 0 314 305 94 16 chr9 57486445 57486519 -60376108 + L2 LINE L2 3223 3313 0 232 140 0 0 chr9 57487119 57487169 -60375458 - L1M4 LINE L1 -1300 4846 4797 1697 179 3 26 chr9 57487199 57487506 -60375121 - AluJb SINE Alu -10 302 3 182 264 19 19 chr9 57489049 57489102 -60373525 - MIR SINE MIR -202 60 8 23 0 0 0 chr9 57492191 57492214 -60370413 + AT_rich Low_complexity Low_complexity 1 23 0 576 358 115 30 chr9 57493605 57494823 -60367804 - L2 LINE L2 0 3313 1991 2298 71 0 7 chr9 57495008 57495336 -60367291 - AluY SINE Alu 0 311 1 21 36 0 0 chr9 57495628 57495656 -60366971 + AT_rich Low_complexity Low_complexity 1 28 0 886 166 13 7 chr9 57495949 57496100 -60366527 - FRAM SINE Alu -16 160 9 1332 239 3 33 chr9 57496107 57496412 -60366215 + AluJo SINE Alu 3 298 -14 3663 237 80 40 chr9 57496589 57498718 -60363909 + L1PA12 LINE L1 2 3034 -4547 717 216 56 6 chr9 57498819 57498981 -60363646 + L1MC4 LINE L1 6835 7004 -1038 2803 103 17 7 chr9 57498992 57499411 -60363216 + L1PA13 LINE L1 5736 6158 -5 2091 101 16 20 chr9 57499420 57499726 -60362901 + AluSg SINE Alu 1 305 -5 406 347 24 40 chr9 57500036 57500284 -60362343 - L1M4 LINE L1 -2229 3917 3674 708 272 60 32 chr9 57500441 57500536 -60362091 - MER58A DNA MER1_type -2197 223 132 930 184 141 95 chr9 57500536 57500804 -60361823 - MLT1A1 LTR MaLR -2 363 74 2216 108 3 0 chr9 57500804 57501101 -60361526 - AluSg SINE Alu -11 299 2 930 184 141 95 chr9 57501101 57501179 -60361448 - MLT1A1 LTR MaLR -291 74 1 708 272 60 32 chr9 57501179 57501300 -60361327 - MER58A DNA MER1_type -2288 132 1 439 341 11 11 chr9 57503781 57503963 -60358664 - L2 LINE L2 -575 2739 2558 206 79 0 26 chr9 57503970 57504008 -60358619 + (TA)n Simple_repeat Simple_repeat 1 37 0 226 315 71 0 chr9 57504530 57504657 -60357970 - MER112 DNA MER1_type 0 260 125 2834 3 0 0 chr9 57505291 57505595 -60357032 - AluY SINE Alu -7 304 1 273 316 34 62 chr9 57505723 57505900 -60356727 + L3 LINE CR1 1055 1226 -351 234 273 25 58 chr9 57505934 57506055 -60356572 + L3 LINE CR1 1178 1294 -283 211 300 17 0 chr9 57506086 57506146 -60356481 + GA-rich Low_complexity Low_complexity 2 62 0 1130 190 111 76 chr9 57506177 57506572 -60356055 - MER69 DNA AcHobo 0 2526 2118 250 261 15 0 chr9 57506552 57506617 -60356010 - MER69 DNA AcHobo -652 574 509 * 994 218 22 13 chr9 57506850 57507075 -60355552 + MER97a DNA MER1_type? 12 238 -656 25916 31 1 1 chr9 57507118 57511038 -60351589 - L1PA4 LINE L1 -3 6152 2229 253 98 0 0 chr9 57511042 57511083 -60351544 + U5 snRNA snRNA 6 46 -70 2111 222 86 18 chr9 57511088 57511705 -60350922 + MER97a DNA MER1_type? 233 891 -3 335 340 75 7 chr9 57511808 57511955 -60350672 + L3 LINE CR1 1355 1511 -66 23 0 0 0 chr9 57512013 57512036 -60350591 + AT_rich Low_complexity Low_complexity 1 23 0 2829 182 43 47 chr9 57512036 57512680 -60349947 - L1MA9 LINE L1 -22 6290 5649 2501 268 81 32 chr9 57512688 57514039 -60348588 - L1M3c LINE L1 -4531 1434 305 1898 168 44 55 chr9 57514057 57514491 -60348136 + LTR3 LTR ERVK 1 429 0 439 127 0 0 chr9 57514491 57514554 -60348073 + LTR3b LTR ERVK 438 500 0 1746 280 2 5 chr9 57514565 57514986 -60347641 - L1M3c LINE L1 -5533 422 3 924 253 38 13 chr9 57515025 57515262 -60347365 - MLT1F1 LTR MaLR -3 564 322 442 212 0 0 chr9 57515288 57515373 -60347254 + MER58B DNA MER1_type 182 266 -75 1868 251 37 33 chr9 57515373 57515915 -60346712 + MER74A LTR ERVL 1 544 -14 402 238 36 0 chr9 57515923 57516007 -60346620 + MER58B DNA MER1_type 254 340 -1 295 193 18 0 chr9 57516119 57516176 -60346451 + MER81 DNA DNA 56 113 -1 461 317 22 39 chr9 57516177 57516407 -60346220 - MLT1F1 LTR MaLR -316 226 1 185 316 32 105 chr9 57517651 57517843 -60344784 + MIR SINE MIR 28 211 -51 2675 199 7 0 chr9 57519645 57520102 -60342525 - MER70A LTR ERVL -2 470 11 217 0 61 0 chr9 57520281 57520314 -60342313 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 180 111 0 0 chr9 57522414 57522441 -60340186 + (TG)n Simple_repeat Simple_repeat 2 28 0 1721 241 77 18 chr9 57522802 57523241 -60339386 - MLT1F LTR MaLR -8 534 70 1676 230 61 33 chr9 57524490 57524981 -60337646 + MLT1D LTR MaLR 1 505 0 415 325 196 10 chr9 57526229 57526438 -60336189 - MIR SINE MIR 0 262 15 281 358 73 7 chr9 57526481 57526618 -60336009 - MIR SINE MIR -108 154 9 24 32 0 0 chr9 57526868 57526899 -60335728 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr9 57530233 57530261 -60332366 + AT_rich Low_complexity Low_complexity 1 28 0 1266 61 0 0 chr9 57530308 57530471 -60332156 + L1PA5 LINE L1 5987 6149 -5 180 0 0 0 chr9 57530503 57530523 -60332104 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 435 300 92 28 chr9 57530556 57531107 -60331520 + L1ME3 LINE L1 5239 5832 -330 368 323 8 0 chr9 57531348 57531478 -60331149 - ERVL LTR ERVL -4610 1154 1024 251 354 53 10 chr9 57531555 57531764 -60330863 - ERVL LTR ERVL -5423 231 14 1906 318 74 38 chr9 57531848 57533250 -60329377 - ERVL LTR ERVL -1900 3096 1838 1752 160 80 9 chr9 57533250 57533600 -60329027 - THE1C LTR MaLR 0 375 1 1906 318 74 38 chr9 57533600 57533802 -60328825 - ERVL LTR ERVL -3158 1838 1645 293 262 37 108 chr9 57534046 57534260 -60328367 + L2 LINE L2 3115 3313 0 913 283 127 8 chr9 57534594 57534972 -60327655 + L2 LINE L2 1951 2373 -941 1870 187 0 0 chr9 57535044 57535354 -60327273 - AluJb SINE Alu -2 310 1 565 134 10 0 chr9 57535425 57535522 -60327105 + L1MA5 LINE L1 6202 6299 -1 7217 29 1 2 chr9 57535672 57536527 -60326100 - L1PA3 LINE L1 -3 6152 5299 8061 21 0 0 chr9 57536527 57537480 -60325147 + L1PA3 LINE L1 4341 5293 -853 197 324 44 0 chr9 57537480 57537548 -60325079 + L2 LINE L2 2689 2759 -555 1290 226 14 5 chr9 57537624 57538014 -60324613 + MLT1D LTR MaLR 19 505 0 244 310 35 35 chr9 57538056 57538143 -60324484 + MIR SINE MIR 16 102 -106 1659 211 12 18 chr9 57538205 57538547 -60324080 - MLT1D LTR MaLR 0 505 166 360 67 0 18 chr9 57538547 57538605 -60324022 + AluY SINE Alu 85 132 -169 1454 55 6 0 chr9 57538615 57538796 -60323831 + AluY SINE Alu 119 300 -11 798 229 6 12 chr9 57538798 57538968 -60323659 - MLT1D LTR MaLR -336 169 1 21 0 0 0 chr9 57540275 57540296 -60322331 + AT_rich Low_complexity Low_complexity 1 21 0 215 291 0 10 chr9 57541004 57541063 -60321564 + C-rich Low_complexity Low_complexity 3 102 0 1389 206 0 54 chr9 57542034 57542342 -60320285 + AluJo SINE Alu 4 296 -6 216 0 0 0 chr9 57542342 57542366 -60320261 + (CATAA)n Simple_repeat Simple_repeat 2 25 0 2308 88 0 7 chr9 57542669 57542977 -60319650 - AluSc SINE Alu -3 306 1 272 209 45 30 chr9 57543851 57543918 -60318709 - L1ME LINE L1 -313 5808 5741 21 36 0 0 chr9 57544104 57544132 -60318495 + AT_rich Low_complexity Low_complexity 1 28 0 23 92 0 0 chr9 57544142 57544207 -60318420 + AT_rich Low_complexity Low_complexity 1 65 0 2419 156 39 2 chr9 57544600 57545011 -60317616 - MSTC LTR MaLR -2 426 1 10478 41 1 2 chr9 57545299 57547368 -60315259 - L1PA6 LINE L1 -2 6152 4085 2420 70 3 6 chr9 57547371 57547702 -60314925 + L1PA6 LINE L1 3741 4070 -2076 388 111 0 0 chr9 57547702 57547765 -60314862 - L1MB7 LINE L1 -10 6174 6112 208 316 0 13 chr9 57547845 57547921 -60314706 + CT-rich Low_complexity Low_complexity 2 76 0 6063 95 33 12 chr9 57547943 57549135 -60313492 - L1PA11 LINE L1 -3 6171 4961 2629 91 6 0 chr9 57549135 57549488 -60313139 + THE1A LTR MaLR 1 355 0 1145 90 0 0 chr9 57549488 57549644 -60312983 + THE1A-int LTR MaLR 1 156 -1424 * 2262 62 3 0 chr9 57549641 57549930 -60312697 - L1PA11 LINE L1 -2406 3740 3451 1307 67 6 0 chr9 57549930 57550095 -60312532 + THE1A LTR MaLR 190 355 0 11487 101 5 4 chr9 57550095 57551673 -60310954 + THE1A-int LTR MaLR 1 1580 0 2481 101 26 0 chr9 57551673 57552019 -60310608 + THE1A LTR MaLR 1 355 0 11445 173 12 3 chr9 57552019 57554135 -60308492 - L1P LINE L1 -1181 4965 2832 11715 191 20 43 chr9 57554281 57555645 -60306982 + L1PA13 LINE L1 2787 4180 -1983 2143 113 28 0 chr9 57555645 57555936 -60306691 + AluSg SINE Alu 1 299 -11 11715 191 20 43 chr9 57555936 57557935 -60304692 + L1PA13 LINE L1 4180 6158 -5 285 118 0 0 chr9 57558826 57558877 -60303750 + (TC)n Simple_repeat Simple_repeat 2 52 0 393 22 0 0 chr9 57558877 57558923 -60303704 + (CA)n Simple_repeat Simple_repeat 1 46 0 2134 120 7 7 chr9 57559056 57559364 -60303263 - MSTA LTR MaLR -120 308 1 506 236 32 0 chr9 57559404 57559527 -60303100 - MER103 DNA DNA -38 128 2 282 29 0 0 chr9 57559690 57559725 -60302902 + (CA)n Simple_repeat Simple_repeat 1 35 0 600 215 186 25 chr9 57559744 57560023 -60302604 + MER33 DNA MER1_type 1 324 0 294 242 78 39 chr9 57560029 57560157 -60302470 - L1ME4a LINE L1 -33 6088 5956 208 188 21 0 chr9 57560180 57560228 -60302399 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 296 149 149 0 chr9 57561514 57561588 -60301039 - L1MCb LINE L1 -4096 2468 2384 2044 179 41 0 chr9 57561641 57562010 -60300617 - MER34C LTR ERV1 -163 422 39 3833 205 69 41 chr9 57562052 57562706 -60299921 - L1MCb LINE L1 -4425 2139 1505 709 206 138 105 chr9 57562706 57563278 -60299349 - LTR49 LTR ERV1 0 595 5 3833 205 69 41 chr9 57563278 57563319 -60299308 - L1MCb LINE L1 -5059 1505 1467 2774 152 4 15 chr9 57563319 57563781 -60298846 + LTR22A LTR ERVK 1 457 -1 3833 205 69 41 chr9 57563781 57564881 -60297746 - L1MCb LINE L1 -5097 1467 216 4235 122 27 41 chr9 57564881 57565618 -60297009 + LTR8A LTR ERV1 1 727 0 3833 205 69 41 chr9 57565618 57565841 -60296786 - L1MCb LINE L1 -6348 216 1 5137 131 20 36 chr9 57569278 57570164 -60292463 - MER4D LTR ERV1 0 872 1 21 0 0 0 chr9 57571025 57571046 -60291581 + AT_rich Low_complexity Low_complexity 1 21 0 316 357 71 30 chr9 57571794 57572063 -60290564 + L1ME LINE L1 4747 5026 -1120 317 310 38 4 chr9 57572153 57572405 -60290222 + L1ME LINE L1 5191 5452 -712 761 252 263 41 chr9 57572542 57573051 -60289576 + L1ME1 LINE L1 3269 3664 -2482 4056 84 7 0 chr9 57573051 57573599 -60289028 + MER41A LTR ERV1 3 554 0 761 252 263 41 chr9 57573599 57574136 -60288491 + L1ME1 LINE L1 3664 4547 -1599 380 108 46 0 chr9 57574138 57574203 -60288424 - MADE1 DNA Mariner 0 80 13 997 248 14 73 chr9 57574324 57574645 -60287982 + L1ME1 LINE L1 5749 6039 -127 1926 129 4 0 chr9 57574645 57574916 -60287711 - AluSx SINE Alu -7 305 34 997 248 14 73 chr9 57574916 57575034 -60287593 + L1ME1 LINE L1 6039 6162 -4 1251 181 8 15 chr9 57576335 57576595 -60286032 - Tigger5 DNA MER2_type 0 2323 2066 435 278 14 7 chr9 57576867 57577011 -60285616 - L1MEc LINE L1 -3843 2372 2228 647 250 12 17 chr9 57577039 57577211 -60285416 - L1MEc LINE L1 -5892 504 334 204 93 56 37 chr9 57577251 57577305 -60285322 + (TA)n Simple_repeat Simple_repeat 2 56 0 6038 139 68 13 chr9 57577671 57578352 -60284275 + Tigger3b DNA MER2_type 50 817 -2211 2545 105 16 8 chr9 57578352 57578724 -60283903 + THE1C LTR MaLR 1 375 0 6038 139 68 13 chr9 57578724 57579162 -60283465 + Tigger3b DNA MER2_type 817 1230 -1 468 336 64 39 chr9 57579202 57579592 -60283035 - HAL1 LINE L1 -834 1673 1274 7030 52 6 0 chr9 57579592 57580479 -60282148 - L1PA7 LINE L1 -4 6150 5259 1566 222 31 76 chr9 57580547 57581034 -60281593 + MLT1D LTR MaLR 41 505 0 291 130 0 0 chr9 57581107 57581161 -60281466 + (TA)n Simple_repeat Simple_repeat 2 55 0 204 125 0 0 chr9 57581199 57581231 -60281396 + (CA)n Simple_repeat Simple_repeat 2 33 0 208 270 0 52 chr9 57581392 57581507 -60281120 + (TTTA)n Simple_repeat Simple_repeat 1 109 0 1776 123 14 4 chr9 57581882 57582158 -60280469 - L1PA15 LINE L1 -2 6163 5885 1030 233 23 31 chr9 57583510 57583768 -60278859 - MIR SINE MIR 0 262 7 2202 111 0 7 chr9 57584838 57585144 -60277483 + AluY SINE Alu 1 304 -7 262 268 118 39 chr9 57585713 57585866 -60276761 - MIR3 SINE MIR -3 205 41 789 239 69 24 chr9 57586251 57586498 -60276129 + MIR SINE MIR 5 262 0 270 316 112 0 chr9 57587537 57587635 -60274992 + L3 LINE CR1 1450 1558 -19 344 271 53 26 chr9 57587729 57587880 -60274747 - L2 LINE L2 0 3313 3159 217 225 0 0 chr9 57588143 57588183 -60274444 - L2 LINE L2 -364 2949 2910 207 88 0 0 chr9 57589870 57589904 -60272723 + (T)n Simple_repeat Simple_repeat 1 34 0 2320 77 13 7 chr9 57590010 57590309 -60272318 - AluSp SINE Alu -12 301 1 487 348 33 6 chr9 57591233 57591414 -60271213 + MIR3 SINE MIR 9 194 -14 1835 154 62 109 chr9 57593218 57593502 -60269125 - LTR32 LTR ERVL -29 442 185 198 71 0 0 chr9 57593502 57593530 -60269097 + (CAGGA)n Simple_repeat Simple_repeat 3 30 0 1835 154 62 109 chr9 57593530 57593694 -60268933 - LTR32 LTR ERVL -286 185 15 350 272 124 36 chr9 57593695 57593870 -60268757 - MIR SINE MIR -58 204 14 298 220 17 0 chr9 57595856 57595915 -60266712 - MER70B LTR ERVL -509 69 10 222 167 30 30 chr9 57596328 57596394 -60266233 + A-rich Low_complexity Low_complexity 2 67 0 440 305 20 7 chr9 57596963 57597114 -60265513 + MIR SINE MIR 94 246 -16 313 259 61 47 chr9 57597379 57597511 -60265116 - MIR SINE MIR -74 188 57 512 261 45 100 chr9 57599584 57599895 -60262732 - MLT1I LTR MaLR 0 409 116 235 184 0 0 chr9 57600134 57600183 -60262444 + L1MC4 LINE L1 6653 6701 -1341 212 186 0 23 chr9 57600183 57600226 -60262401 + (TATATG)n Simple_repeat Simple_repeat 3 44 0 24 32 0 0 chr9 57600297 57600328 -60262299 + AT_rich Low_complexity Low_complexity 1 31 0 533 236 70 50 chr9 57600579 57600778 -60261849 - MLT1H LTR MaLR 0 549 347 1681 215 19 27 chr9 57600860 57601236 -60261391 - MSTD LTR MaLR 0 396 24 5648 236 65 62 chr9 57601243 57602972 -60259655 - MSTD-int LTR MaLR 0 1735 2 1215 230 49 27 chr9 57602976 57603332 -60259295 - MSTD LTR MaLR -2 394 1 294 307 79 0 chr9 57603334 57603461 -60259166 - MLT1H LTR MaLR -285 264 128 183 146 0 0 chr9 57604098 57604139 -60258488 + (TG)n Simple_repeat Simple_repeat 1 41 0 1940 139 16 10 chr9 57604247 57604557 -60258070 - AluSx SINE Alu 0 312 1 23 0 0 0 chr9 57606205 57606228 -60256399 + AT_rich Low_complexity Low_complexity 1 23 0 354 288 29 3 chr9 57606306 57606476 -60256151 - MLT1J2 LTR MaLR 0 427 280 377 286 102 62 chr9 57606908 57607203 -60255424 + L1MC/D LINE L1 5255 5582 -2226 1796 69 126 7 chr9 57607203 57607480 -60255147 - AluJb SINE Alu -2 310 1 377 286 102 62 chr9 57607480 57607715 -60254912 + L1MC/D LINE L1 5582 5806 -2002 210 71 0 0 chr9 57607940 57607968 -60254659 + (CTG)n Simple_repeat Simple_repeat 3 30 0 212 179 310 16 chr9 57607988 57608088 -60254539 - MIR SINE MIR -24 238 110 374 315 25 59 chr9 57608141 57608379 -60254248 + L2 LINE L2 2645 2874 -440 521 238 55 49 chr9 57608466 57608630 -60253997 + L2 LINE L2 3149 3313 0 194 304 33 33 chr9 57609635 57609727 -60252900 - L3b LINE CR1 -273 1310 1219 246 261 65 22 chr9 57609811 57609903 -60252724 + Charlie8 DNA MER1_type 52 147 -2270 28 0 0 0 chr9 57610273 57610301 -60252326 + AT_rich Low_complexity Low_complexity 1 28 0 306 87 0 0 chr9 57610550 57610596 -60252031 + (CA)n Simple_repeat Simple_repeat 1 46 0 1191 214 84 63 chr9 57613521 57613947 -60248680 - MER63B DNA MER1_type 0 436 2 22 70 0 0 chr9 57614495 57614538 -60248089 + AT_rich Low_complexity Low_complexity 1 43 0 308 291 55 0 chr9 57614599 57614726 -60247901 - LTR67 LTR ERVL -13 544 411 246 385 30 34 chr9 57614873 57615107 -60247520 - LTR67 LTR ERVL -324 233 1 762 336 116 11 chr9 57616517 57616957 -60245670 + L3 LINE CR1 937 1422 -155 383 319 81 72 chr9 57617764 57618112 -60244515 - L2 LINE L2 -10 3303 2953 236 336 33 33 chr9 57618205 57618327 -60244300 - L2 LINE L2 -461 2853 2732 716 259 10 39 chr9 57618339 57618544 -60244083 + MER58A DNA MER1_type 26 224 0 249 396 40 10 chr9 57618622 57618824 -60243803 - L2 LINE L2 -682 2632 2425 26 30 0 0 chr9 57618829 57618862 -60243765 + AT_rich Low_complexity Low_complexity 1 33 0 183 42 0 0 chr9 57618976 57619000 -60243627 + (TA)n Simple_repeat Simple_repeat 2 25 0 37 23 0 0 chr9 57619098 57619142 -60243485 + AT_rich Low_complexity Low_complexity 1 44 0 3484 185 13 14 chr9 57619177 57619281 -60243346 - L1MB3 LINE L1 -1 6182 6079 3539 168 55 123 chr9 57619281 57619928 -60242699 - MER54A LTR ERVL -2 899 338 251 93 23 0 chr9 57619928 57619971 -60242656 + (TTTTG)n Simple_repeat Simple_repeat 4 47 0 3539 168 55 123 chr9 57619971 57620287 -60242340 - MER54A LTR ERVL -563 338 2 3484 185 13 14 chr9 57620287 57620890 -60241737 - L1MB3 LINE L1 -104 6079 5476 21321 185 25 22 chr9 57620920 57626065 -60236562 - L1PA11 LINE L1 -4 7608 1084 1876 156 3 31 chr9 57626065 57626455 -60236172 - AluSq SINE Alu 0 313 1 21321 185 25 22 chr9 57626455 57627535 -60235092 - L1PA11 LINE L1 -6528 1084 9 1326 212 76 12 chr9 57627670 57628113 -60234514 + MLT1D LTR MaLR 1 498 -7 29 47 0 0 chr9 57628636 57628679 -60233948 + AT_rich Low_complexity Low_complexity 1 43 0 26 82 0 0 chr9 57628988 57629049 -60233578 + AT_rich Low_complexity Low_complexity 1 61 0 27 0 0 0 chr9 57629146 57629173 -60233454 + AT_rich Low_complexity Low_complexity 1 27 0 586 273 103 15 chr9 57629476 57629747 -60232880 - L1M4 LINE L1 -2091 4055 3761 988 194 66 62 chr9 57629821 57630110 -60232517 + MLT1B LTR MaLR 101 390 0 1120 249 76 17 chr9 57630110 57630516 -60232111 - L1M4 LINE L1 -3350 2796 2367 340 203 0 0 chr9 57630547 57630616 -60232011 - L1M4 LINE L1 -1200 4946 4878 35 0 0 0 chr9 57630818 57630853 -60231774 + AT_rich Low_complexity Low_complexity 1 35 0 4547 167 50 3 chr9 57630856 57631717 -60230910 - L1MA7 LINE L1 0 6291 5391 2716 191 24 13 chr9 57631729 57632280 -60230347 - L1MC3 LINE L1 -7 7778 7222 286 275 12 0 chr9 57632307 57632387 -60230240 - MLT1F1 LTR MaLR -442 125 45 3357 221 42 26 chr9 57632493 57633563 -60229064 + L1M3 LINE L1 4400 5491 -689 854 256 32 4 chr9 57633572 57633799 -60228828 + L1P3 LINE L1 1 1358 -5640 19370 198 12 10 chr9 57633800 57637930 -60224697 + L1P3 LINE L1 1479 6403 -1181 2481 101 26 0 chr9 57637930 57638276 -60224351 - THE1A LTR MaLR 0 355 1 11448 102 6 4 chr9 57638276 57639853 -60222774 - THE1A-int LTR MaLR 0 1580 1 1307 67 6 0 chr9 57639853 57640018 -60222609 - THE1A LTR MaLR 0 355 190 2262 62 3 0 chr9 57640018 57640307 -60222320 + L1PA11 LINE L1 3451 3740 -2406 1145 90 0 0 chr9 57640304 57640460 -60222167 - THE1A-int LTR MaLR -1424 156 1 * 2629 91 6 0 chr9 57640460 57640813 -60221814 - THE1A LTR MaLR 0 355 1 6064 95 22 1 chr9 57640813 57642005 -60220622 + L1PA11 LINE L1 4961 6171 -3 208 316 0 13 chr9 57642027 57642103 -60220524 + GA-rich Low_complexity Low_complexity 2 76 0 388 111 0 0 chr9 57642183 57642246 -60220381 + L1MB7 LINE L1 6112 6174 -10 2420 70 3 6 chr9 57642246 57642577 -60220050 - L1PA3 LINE L1 -2076 4070 3741 10528 39 1 3 chr9 57642580 57644649 -60217978 + L1PA3 LINE L1 4085 6152 -3 565 134 10 0 chr9 57644799 57644896 -60217731 - L1MA5 LINE L1 -1 6299 6202 1870 187 0 0 chr9 57644967 57645277 -60217350 + AluJb SINE Alu 1 310 -2 913 283 127 8 chr9 57645349 57645727 -60216900 - L2 LINE L2 -941 2373 1951 293 262 37 108 chr9 57646061 57646275 -60216352 - L2 LINE L2 0 3313 3115 559 289 20 20 chr9 57646519 57646720 -60215907 + ERVL LTR ERVL 1645 1845 -3919 1752 160 80 9 chr9 57646721 57647071 -60215556 + THE1C LTR MaLR 1 375 0 299 130 19 0 chr9 57647175 57647229 -60215398 + GA-rich Low_complexity Low_complexity 3 57 0 2924 222 67 20 chr9 57650873 57652139 -60210488 - L1MB7 LINE L1 -17 6167 4844 700 115 10 0 chr9 57652137 57652241 -60210386 + L1M4c LINE L1 13 117 -6267 * 2649 166 96 0 chr9 57652243 57652689 -60209938 - MER1A DNA MER1_type 0 529 41 12124 192 38 8 chr9 57652705 57653362 -60209265 + L1M4c LINE L1 111 747 -5635 270 0 0 0 chr9 57653362 57653392 -60209235 + (CAA)n Simple_repeat Simple_repeat 1 30 0 12124 192 38 8 chr9 57653392 57655847 -60206780 + L1M4c LINE L1 747 3317 -3065 1143 273 36 6 chr9 57655973 57656439 -60206188 + L1M4c LINE L1 3278 3757 -2625 14377 199 36 35 chr9 57656451 57659777 -60202850 + L1PA8 LINE L1 1571 4880 -2008 2048 144 0 0 chr9 57659777 57660076 -60202551 + AluSx SINE Alu 1 299 -13 14377 199 36 35 chr9 57660076 57661926 -60200701 + L1PA8 LINE L1 4880 6726 -162 1910 149 16 3 chr9 57661703 57662025 -60200602 + L1PB1 LINE L1 6499 6824 -43 * 3280 239 39 13 chr9 57662148 57663051 -60199576 + L1M4c LINE L1 4211 5136 -1246 7212 45 1 6 chr9 57663051 57664674 -60197953 - L1PA5 LINE L1 -2 6152 4536 297 0 0 0 chr9 57665509 57665542 -60197085 + (CA)n Simple_repeat Simple_repeat 2 34 0 205 333 98 8 chr9 57665802 57665925 -60196702 + MIR SINE MIR 20 153 -109 695 287 60 14 chr9 57669876 57670092 -60192535 + MIR SINE MIR 31 256 -6 1224 249 74 68 chr9 57670476 57671071 -60191556 - MLT1E3 LTR MaLR -20 634 1 194 203 177 38 chr9 57671497 57671576 -60191051 - MIR3 SINE MIR -34 174 85 23 33 0 0 chr9 57673328 57673358 -60189269 + AT_rich Low_complexity Low_complexity 1 30 0 342 140 0 0 chr9 57673358 57673408 -60189219 - MER66A LTR ERV1 -140 338 289 273 114 23 0 chr9 57674609 57674653 -60187974 + MADE1 DNA Mariner 36 80 0 261 0 0 0 chr9 57675362 57675391 -60187236 + (TTA)n Simple_repeat Simple_repeat 2 30 0 2161 107 0 39 chr9 57675393 57675703 -60186924 - AluSp SINE Alu -15 298 1 614 288 42 42 chr9 57676694 57677072 -60185555 + MER113 DNA MER1_type? 6 383 -138 2553 111 0 13 chr9 57677177 57677554 -60185073 + THE1C LTR MaLR 4 375 0 9407 113 48 43 chr9 57677554 57679125 -60183502 + THE1C-int LTR MaLR 1 1580 0 2434 130 0 11 chr9 57679125 57679502 -60183125 + THE1C LTR MaLR 1 373 -2 368 268 41 15 chr9 57679831 57679976 -60182651 - MLT1J LTR MaLR -263 180 39 26 30 0 0 chr9 57680323 57680356 -60182271 + AT_rich Low_complexity Low_complexity 1 33 0 345 47 0 0 chr9 57680611 57680654 -60181973 + (CA)n Simple_repeat Simple_repeat 2 44 0 808 281 36 20 chr9 57682004 57682415 -60180212 + L2 LINE L2 2715 3133 -180 265 322 20 75 chr9 57682421 57682620 -60180007 + L2 LINE L2 3096 3283 -30 261 0 0 0 chr9 57682642 57682671 -60179956 + (GA)n Simple_repeat Simple_repeat 2 30 0 304 298 124 31 chr9 57682716 57682877 -60179750 + MIR SINE MIR 15 190 -72 321 331 71 0 chr9 57683186 57683313 -60179314 - MIR SINE MIR -119 143 8 225 237 0 0 chr9 57683963 57684022 -60178605 + (TAA)n Simple_repeat Simple_repeat 2 60 0 288 211 0 0 chr9 57685800 57685871 -60176756 + (TA)n Simple_repeat Simple_repeat 2 72 0 2301 222 67 35 chr9 57686291 57686899 -60175728 - MER92B LTR ERV1 -8 628 1 249 298 151 20 chr9 57687518 57687679 -60174948 - MIR SINE MIR -60 202 17 23 0 0 0 chr9 57689667 57689690 -60172937 + AT_rich Low_complexity Low_complexity 1 23 0 1034 259 24 19 chr9 57691319 57691693 -60170934 + L1ME4a LINE L1 5555 5930 -191 5463 25 0 0 chr9 57693251 57693889 -60168738 - L1PA3 LINE L1 -144 6011 5374 * 7186 29 3 0 chr9 57693878 57694736 -60167891 - L1PA2 LINE L1 -1 6154 5294 19251 31 2 0 chr9 57694737 57697078 -60165549 + L1P LINE L1 3046 5389 -757 5875 185 60 25 chr9 57697083 57698513 -60164114 + Looper DNA T2_type 71 1550 -8 249 275 29 0 chr9 57698700 57698769 -60163858 + CT-rich Low_complexity Low_complexity 2 72 0 180 359 205 0 chr9 57698996 57699074 -60163553 + L2 LINE L2 3162 3255 -17 1272 169 124 22 chr9 57700839 57701250 -60161377 + L1MB7 LINE L1 5704 6171 0 256 264 46 75 chr9 57701382 57701753 -60160874 - L1MEd LINE L1 -5045 1074 715 288 0 0 0 chr9 57701768 57701800 -60160827 + (TG)n Simple_repeat Simple_repeat 1 32 0 339 370 106 50 chr9 57701873 57702214 -60160413 - L1MEd LINE L1 -5492 627 268 1050 272 97 34 chr9 57702258 57702703 -60159924 + L1ME2 LINE L1 5683 6155 -9 241 331 108 14 chr9 57702867 57703006 -60159621 - MER117 DNA MER1_type -1 196 45 989 323 71 44 chr9 57703076 57703718 -60158909 + L2 LINE L2 2467 3152 -161 467 17 17 0 chr9 57703718 57703778 -60158849 + (CA)n Simple_repeat Simple_repeat 2 62 0 989 323 71 44 chr9 57703778 57703941 -60158686 + L2 LINE L2 3152 3309 -4 431 264 59 68 chr9 57704140 57704568 -60158059 - L1MCc LINE L1 -4890 1533 1263 23 0 0 0 chr9 57705096 57705119 -60157508 + AT_rich Low_complexity Low_complexity 1 23 0 2522 149 58 15 chr9 57705157 57705351 -60157276 + L1MC1 LINE L1 5850 6034 -299 2053 130 55 19 chr9 57705351 57705713 -60156914 + THE1C LTR MaLR 1 375 0 2522 149 58 15 chr9 57705713 57705982 -60156645 + L1MC1 LINE L1 6034 6333 0 393 353 27 27 chr9 57706708 57706895 -60155732 + MIR SINE MIR 3 189 -73 23 33 0 0 chr9 57709255 57709285 -60153342 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr9 57711146 57711167 -60151460 + AT_rich Low_complexity Low_complexity 1 21 0 525 348 67 18 chr9 57711168 57711886 -60150741 + L1ME LINE L1 4498 5250 -896 334 336 97 42 chr9 57711887 57712125 -60150502 + L1ME LINE L1 5339 5589 -532 1359 82 0 0 chr9 57712170 57712341 -60150286 + AluSq SINE Alu 131 301 -12 2332 88 0 0 chr9 57713511 57713806 -60148821 - AluSg SINE Alu -15 295 1 4583 93 40 22 chr9 57714187 57714718 -60147909 + LTR8 LTR ERV1 1 548 -143 2164 114 7 3 chr9 57714718 57715039 -60147588 + AluSx SINE Alu 1 312 0 4583 93 40 22 chr9 57715039 57715186 -60147441 + LTR8 LTR ERV1 548 691 0 181 315 27 0 chr9 57715398 57715471 -60147156 - MIR SINE MIR -110 152 78 25 51 0 0 chr9 57716075 57716114 -60146513 + AT_rich Low_complexity Low_complexity 1 39 0 2107 118 10 0 chr9 57717392 57717680 -60144947 - AluSx SINE Alu -21 291 1 3531 198 14 77 chr9 57717780 57718817 -60143810 - L1MC3 LINE L1 -2 7783 6812 317 238 12 0 chr9 57718888 57718968 -60143659 - L1MC3 LINE L1 -27 7758 7678 3817 224 113 123 chr9 57718984 57720860 -60141767 - L1MCb LINE L1 -4550 2014 3 310 206 15 15 chr9 57723591 57723659 -60138968 - MIR SINE MIR -104 158 91 315 0 0 0 chr9 57724236 57724271 -60138356 + (CA)n Simple_repeat Simple_repeat 2 36 0 2845 94 0 8 chr9 57726066 57726468 -60136159 + L1PA8A LINE L1 5725 6123 -8 21 95 0 0 chr9 57727284 57727347 -60135280 + AT_rich Low_complexity Low_complexity 1 63 0 336 48 0 0 chr9 57728134 57728176 -60134451 + (GA)n Simple_repeat Simple_repeat 2 43 0 1178 183 108 20 chr9 57728176 57728427 -60134200 - AluJb SINE Alu -39 273 1 1675 160 127 45 chr9 57728562 57728777 -60133850 - LOR1b LTR ERV1 -1 460 264 2165 136 33 22 chr9 57728777 57729137 -60133490 + THE1B LTR MaLR 1 364 0 1675 160 127 45 chr9 57729137 57729346 -60133281 - LOR1b LTR ERV1 -197 264 1 1644 145 95 7 chr9 57729447 57729751 -60132876 + MLT2C1 LTR ERVL 17 347 -50 402 342 89 5 chr9 57730027 57730217 -60132410 - MIR SINE MIR -6 256 51 205 227 23 0 chr9 57730353 57730397 -60132230 - MIR SINE MIR -67 141 97 284 269 16 48 chr9 57730640 57730826 -60131801 + (TA)n Simple_repeat Simple_repeat 1 180 0 210 37 0 0 chr9 57731336 57731363 -60131264 + (CA)n Simple_repeat Simple_repeat 1 27 0 1297 214 105 30 chr9 57733560 57733930 -60128697 + MER92A LTR ERV1 1 398 -14 243 276 0 0 chr9 57734783 57734841 -60127786 + L3 LINE CR1 1517 1574 -3 315 223 41 20 chr9 57735651 57735752 -60126875 - MLT1I LTR MaLR 0 539 313 322 302 29 50 chr9 57736237 57736376 -60126251 - MIR3 SINE MIR -50 158 23 189 244 93 23 chr9 57736504 57736590 -60126037 - L3 LINE CR1 -809 768 677 * 208 291 66 66 chr9 57736572 57736723 -60125904 + L2 LINE L2 3122 3272 0 1497 208 7 14 chr9 57737360 57737653 -60124974 - AluJb SINE Alu -19 293 3 744 167 8 0 chr9 57737673 57737793 -60124834 - FLAM_C SINE Alu -9 124 4 494 295 82 25 chr9 57738047 57738291 -60124336 - HERV16 LTR ERVL -2706 2290 2033 1758 191 2 72 chr9 57738296 57738715 -60123912 - MLT1B LTR MaLR 0 390 1 483 257 112 50 chr9 57738752 57738993 -60123634 - HERV16 LTR ERVL -3681 1973 1718 4116 186 28 12 chr9 57739089 57739907 -60122720 - Tigger6a DNA MER2_type -229 854 24 275 271 47 0 chr9 57740303 57740410 -60122217 + L1ME LINE L1 5764 5875 -295 201 239 0 42 chr9 57740573 57740644 -60121983 + A-rich Low_complexity Low_complexity 5 72 0 18590 48 54 3 chr9 57740648 57743042 -60119585 + L1PA2 LINE L1 3 2519 -3627 13233 22 4 0 chr9 57743142 57745353 -60117274 + L1PA2 LINE L1 3798 6015 -140 896 25 8 0 chr9 57745457 57745575 -60117052 - L1P LINE L1 -2852 3294 3176 198 0 0 0 chr9 57745628 57745650 -60116977 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 6706 68 24 10 chr9 57745677 57747356 -60115271 - L1PA8 LINE L1 -1 6171 4482 347 159 16 0 chr9 57747792 57747855 -60114772 + MLT2C1 LTR ERVL 277 340 -57 724 201 66 84 chr9 57747861 57748050 -60114577 + L1M4 LINE L1 4129 4313 -1833 1485 194 124 14 chr9 57748050 57748405 -60114222 + MSTD LTR MaLR 1 394 -2 724 201 66 84 chr9 57748405 57748488 -60114139 + L1M4 LINE L1 4313 4396 -1750 559 279 31 25 chr9 57748489 57748650 -60113977 + MLT1A2 LTR MaLR 1 162 -212 996 223 0 24 chr9 57748707 57748913 -60113714 + MLT1A2 LTR MaLR 174 374 0 3144 236 65 71 chr9 57748913 57749690 -60112937 + MLT1A2-int LTR MaLR 1 781 -590 2226 120 0 0 chr9 57749690 57749989 -60112638 - AluSg SINE Alu -11 299 1 3144 236 65 71 chr9 57749989 57750319 -60112308 + MLT1A2-int LTR MaLR 781 1103 -268 180 0 0 0 chr9 57750319 57750339 -60112288 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 3144 236 65 71 chr9 57750339 57750387 -60112240 + MLT1A2-int LTR MaLR 1103 1150 -221 1037 128 61 0 chr9 57751374 57751538 -60111089 + MER58B DNA MER1_type 168 341 0 314 377 9 9 chr9 57751801 57751907 -60110720 + MER91A DNA MER1_type 35 140 -56 2275 109 0 0 chr9 57751927 57752221 -60110406 + AluSc SINE Alu 4 297 -12 4941 106 6 42 chr9 57752673 57753974 -60108653 + L1PA12 LINE L1 4888 6168 0 26 0 0 0 chr9 57754078 57754104 -60108523 + AT_rich Low_complexity Low_complexity 1 26 0 30 45 0 0 chr9 57754285 57754329 -60108298 + AT_rich Low_complexity Low_complexity 1 44 0 282 373 121 25 chr9 57754563 57754659 -60107968 - L2 LINE L2 -337 2977 2892 1289 160 69 148 chr9 57754659 57754898 -60107729 - MLT1A2 LTR MaLR 0 374 179 276 30 0 0 chr9 57754898 57754931 -60107696 + (GA)n Simple_repeat Simple_repeat 2 34 0 1289 160 69 148 chr9 57754931 57755097 -60107530 - MLT1A2 LTR MaLR -195 179 1 282 373 121 25 chr9 57755097 57755472 -60107155 - L2 LINE L2 -422 2892 2461 1499 202 12 3 chr9 57757043 57757385 -60105242 + L1P LINE L1 2954 3298 -2848 22 35 0 0 chr9 57759017 57759046 -60103581 + AT_rich Low_complexity Low_complexity 1 29 0 464 268 0 36 chr9 57759046 57759214 -60103413 + L1M4 LINE L1 357 518 -6321 428 299 96 11 chr9 57760012 57760189 -60102438 - MIR SINE MIR 0 262 71 25 51 0 0 chr9 57760422 57760461 -60102166 + AT_rich Low_complexity Low_complexity 1 39 0 9689 39 7 1 chr9 57760461 57762469 -60100158 - L1PA4 LINE L1 -6 6149 4182 41408 43 23 1 chr9 57762469 57768484 -60094143 - L1PA2 LINE L1 -7 6148 1 32929 59 1 2 chr9 57768484 57772679 -60089948 - L1PA4 LINE L1 -1952 4194 3 352 245 104 126 chr9 57773122 57773448 -60089179 + L1M4 LINE L1 877 1195 -5228 261 301 52 40 chr9 57773465 57773638 -60088989 + LTR33 LTR ERVL 340 514 -7 5011 180 53 21 chr9 57773694 57775010 -60087617 - L1MA4A LINE L1 -24 6981 5573 2125 127 23 49 chr9 57775010 57775395 -60087232 - THE1C LTR MaLR 0 375 1 5011 180 53 21 chr9 57775395 57776134 -60086493 - L1MA4A LINE L1 -1432 5573 4859 1580 78 0 0 chr9 57776135 57776339 -60086288 - L1PA7 LINE L1 -3 6151 5948 1677 30 0 0 chr9 57776339 57776538 -60086089 + L1PA7 LINE L1 5758 5956 -198 765 145 0 0 chr9 57776537 57776654 -60085973 - L1MA4A LINE L1 -1978 4870 4754 * 3258 198 46 35 chr9 57776656 57777047 -60085580 - L1MA4A LINE L1 -2973 3875 3490 2329 88 0 10 chr9 57777047 57777355 -60085272 - AluY SINE Alu -1 310 6 3258 198 46 35 chr9 57777355 57777873 -60084754 - L1MA4A LINE L1 -3358 3490 2956 2891 224 13 161 chr9 57777894 57779120 -60083507 - L1MA4A LINE L1 -5803 1046 3 248 381 153 40 chr9 57779312 57779664 -60082963 + L2 LINE L2 2865 3256 -16 2286 103 0 3 chr9 57780058 57780359 -60082268 - AluSg SINE Alu -8 302 3 429 350 49 35 chr9 57780507 57780733 -60081894 - MIR SINE MIR -27 235 7 21 57 0 0 chr9 57780997 57781032 -60081595 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr9 57781084 57781107 -60081520 + AT_rich Low_complexity Low_complexity 1 23 0 384 262 28 0 chr9 57781398 57781539 -60081088 + (TA)n Simple_repeat Simple_repeat 2 146 0 247 326 178 8 chr9 57782846 57782975 -60079652 - L2 LINE L2 -571 2743 2593 194 208 25 133 chr9 57785043 57785163 -60077464 + L3 LINE CR1 902 1008 -569 1653 151 13 44 chr9 57785170 57785468 -60077159 + AluJo SINE Alu 1 289 -23 575 146 118 0 chr9 57785500 57785610 -60077017 + AluSp/q SINE Alu 189 311 -2 479 306 18 57 chr9 57785612 57785841 -60076786 + MIR SINE MIR 29 248 -14 187 339 200 16 chr9 57785940 57786185 -60076442 + L3 LINE CR1 1050 1339 -238 276 211 19 0 chr9 57786207 57786259 -60076368 - L2 LINE L2 -2 3270 3218 219 280 0 0 chr9 57786507 57786557 -60076070 - L2 LINE L2 -339 2974 2925 202 285 45 123 chr9 57786617 57786677 -60075950 - L2 LINE L2 -519 2795 2732 2200 94 7 29 chr9 57786677 57786985 -60075642 + AluSc SINE Alu 1 301 -8 202 285 45 123 chr9 57786985 57787103 -60075524 - L2 LINE L2 -582 2732 2631 861 206 6 6 chr9 57787227 57787392 -60075235 + FRAM SINE Alu 1 164 -12 328 286 107 71 chr9 57787406 57787546 -60075081 + L3 LINE CR1 1430 1574 -3 386 302 57 19 chr9 57787837 57787996 -60074631 + MIR SINE MIR 42 206 -56 29 47 0 0 chr9 57788005 57788048 -60074579 + AT_rich Low_complexity Low_complexity 1 43 0 566 303 117 41 chr9 57789486 57790173 -60072454 + L1ME LINE L1 4807 5558 -608 32 0 0 0 chr9 57790564 57790596 -60072031 + AT_rich Low_complexity Low_complexity 1 32 0 239 98 20 39 chr9 57791150 57791201 -60071426 - LTR66 LTR ERVL -171 439 390 275 273 23 0 chr9 57791661 57791749 -60070878 + (TA)n Simple_repeat Simple_repeat 1 90 0 3859 216 35 19 chr9 57791942 57792967 -60069660 - L1MB1 LINE L1 -1383 4763 3722 3042 184 21 9 chr9 57792964 57793965 -60068662 + L1MB1 LINE L1 4776 5791 -377 * 621 69 0 0 chr9 57793965 57794052 -60068575 + (TG)n Simple_repeat Simple_repeat 2 88 0 3042 184 21 9 chr9 57794052 57794105 -60068522 + L1MB1 LINE L1 5791 5842 -326 1325 216 23 11 chr9 57794106 57794370 -60068257 + L1MCa LINE L1 362 628 -5798 432 172 0 32 chr9 57794371 57794464 -60068163 - L1MCa LINE L1 -5150 1791 1702 4340 240 47 11 chr9 57794469 57795817 -60066810 + L1M4 LINE L1 2550 3945 -2201 1690 312 62 45 chr9 57795854 57796794 -60065833 - L1MCa LINE L1 -5459 964 9 443 350 90 29 chr9 57796860 57797289 -60065338 + L2 LINE L2 2665 3110 -203 1574 162 63 33 chr9 57797401 57797735 -60064892 - Tigger7 DNA MER2_type -6 2581 2238 708 154 0 41 chr9 57797732 57797855 -60064772 - Tigger7 DNA MER2_type -615 118 1 * 2233 173 34 5 chr9 57798111 57798527 -60064100 + MSTA LTR MaLR 1 428 0 8615 161 45 18 chr9 57798527 57798912 -60063715 + MSTA-int LTR MaLR 1 374 -1277 1986 152 0 10 chr9 57798912 57799222 -60063405 - AluSq SINE Alu -6 307 1 8615 161 45 18 chr9 57799222 57800443 -60062184 + MSTA-int LTR MaLR 374 1651 0 2182 142 89 2 chr9 57800443 57800837 -60061790 + MSTA LTR MaLR 1 428 0 346 175 25 0 chr9 57801293 57801373 -60061254 + CT-rich Low_complexity Low_complexity 3 84 0 1624 166 55 17 chr9 57801577 57801867 -60060760 - AluJo SINE Alu -11 301 1 21 0 0 0 chr9 57802438 57802459 -60060168 + AT_rich Low_complexity Low_complexity 1 21 0 226 185 0 46 chr9 57802706 57802771 -60059856 + GA-rich Low_complexity Low_complexity 5 66 0 314 287 98 43 chr9 57803182 57803346 -60059281 - MIR SINE MIR -6 256 84 218 358 101 0 chr9 57804498 57804607 -60058020 - MIR SINE MIR -69 139 20 1825 140 53 0 chr9 57804659 57804944 -60057683 + AluSx SINE Alu 1 300 -12 2169 150 94 13 chr9 57805263 57805657 -60056970 - MSTB LTR MaLR 0 426 1 575 179 123 6 chr9 57805803 57805965 -60056662 + Charlie4 DNA MER1_type 34 214 -1747 399 348 86 44 chr9 57806160 57806823 -60055804 + L2 LINE L2 2574 3258 -55 180 158 0 79 chr9 57806853 57806891 -60055736 - MIR SINE MIR -117 145 111 312 226 0 60 chr9 57808363 57808447 -60054180 + L3b LINE CR1 1275 1353 -230 491 293 33 0 chr9 57808820 57808970 -60053657 - LTR16C LTR ERVL 0 491 337 218 336 144 8 chr9 57810148 57810273 -60052354 + MIR SINE MIR 90 231 -31 238 288 122 32 chr9 57811079 57811221 -60051406 - MIR SINE MIR -33 175 20 427 233 118 30 chr9 57812242 57812571 -60050056 - L1MC/D LINE L1 -1984 5824 5298 24 53 0 0 chr9 57812674 57812712 -60049915 + AT_rich Low_complexity Low_complexity 1 38 0 408 337 58 17 chr9 57813059 57813231 -60049396 + L2 LINE L2 311 489 -2825 1407 322 136 11 chr9 57813238 57813973 -60048654 + L2 LINE L2 1195 2021 -1293 788 255 35 156 chr9 57813976 57814741 -60047886 - MER77 LTR ERV1 -34 571 60 934 258 96 34 chr9 57814781 57815137 -60047490 + L2 LINE L2 2029 2406 -908 256 365 32 8 chr9 57815140 57815266 -60047361 + L2 LINE L2 2554 2682 -632 227 336 76 15 chr9 57815379 57815510 -60047117 + L2 LINE L2 3171 3309 -4 749 113 45 0 chr9 57815719 57815852 -60046775 + Alu SINE Alu 172 310 0 1122 261 53 43 chr9 57817320 57817714 -60044913 + LTR16C LTR ERVL 86 483 -8 817 248 37 61 chr9 57818357 57818692 -60043935 - L1ME LINE L1 -481 5683 5354 307 329 0 0 chr9 57818792 57818871 -60043756 + L2 LINE L2 3179 3257 -15 1537 208 21 9 chr9 57819632 57819968 -60042659 + MER58B DNA MER1_type 1 340 -1 700 198 0 0 chr9 57820292 57820413 -60042214 + FLAM_C SINE Alu 1 121 -22 261 57 0 0 chr9 57820413 57820448 -60042179 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 244 183 42 28 chr9 57820910 57820981 -60041646 + (CTATT)n Simple_repeat Simple_repeat 3 74 0 918 222 73 13 chr9 57821446 57821738 -60040889 + L1MD1 LINE L1 5377 5627 -615 1298 203 64 80 chr9 57821745 57822120 -60040507 + MLT1A2 LTR MaLR 1 369 -5 841 186 39 27 chr9 57822151 57822509 -60040118 + L1MD1 LINE L1 5699 6242 0 1783 54 4 97 chr9 57822749 57822815 -60039812 - L1PB1 LINE L1 0 6151 6080 1960 122 59 17 chr9 57822815 57823103 -60039524 - AluSx SINE Alu -12 300 1 1783 54 4 97 chr9 57823103 57823314 -60039313 - L1PB1 LINE L1 -71 6080 5900 219 259 0 0 chr9 57823446 57823500 -60039127 + (TATATG)n Simple_repeat Simple_repeat 1 54 0 428 216 40 122 chr9 57824833 57825055 -60037572 + L1ME2 LINE L1 5961 6164 0 318 26 0 0 chr9 57825188 57825227 -60037400 + (TG)n Simple_repeat Simple_repeat 2 40 0 232 354 62 46 chr9 57825296 57825426 -60037201 + L2 LINE L2 3138 3269 -3 1286 142 65 3 chr9 57825601 57825919 -60036708 - MSTA LTR MaLR 0 426 4 2173 73 4 4 chr9 57826365 57826638 -60035989 + AluY SINE Alu 29 301 -10 5718 187 23 13 chr9 57827966 57829565 -60033062 + L1MC1 LINE L1 4724 6332 -1 2030 232 84 14 chr9 57830616 57831466 -60031161 + L1PA8A LINE L1 4585 5477 -654 244 238 0 0 chr9 57831440 57831503 -60031124 + L1ME2 LINE L1 6092 6154 -10 * 983 274 51 38 chr9 57831877 57832711 -60029916 + L1MEc LINE L1 1875 2685 -3530 217 257 59 118 chr9 57833566 57833702 -60028925 - L2 LINE L2 -1 3312 3185 3307 71 21 5 chr9 57833702 57834139 -60028488 + MLT2A1 LTR ERVL 1 444 0 23 0 0 0 chr9 57834148 57834171 -60028456 + AT_rich Low_complexity Low_complexity 1 23 0 2577 135 9 24 chr9 57834262 57834714 -60027913 - MER65A LTR ERV1 0 445 1 229 310 171 68 chr9 57834855 57835097 -60027530 - L2 LINE L2 -497 2817 2601 2027 153 16 16 chr9 57835097 57835333 -60027294 + L1MA5 LINE L1 5910 6148 -152 2347 106 0 0 chr9 57835333 57835635 -60026992 + AluSq SINE Alu 1 302 -11 2027 153 16 16 chr9 57835635 57835785 -60026842 + L1MA5 LINE L1 6147 6296 -4 229 310 171 68 chr9 57835785 57836216 -60026411 - L2 LINE L2 -713 2601 2055 1855 184 3 0 chr9 57836216 57836521 -60026106 - AluJo SINE Alu -6 306 1 229 310 171 68 chr9 57836521 57836608 -60026019 - L2 LINE L2 -1259 2055 1978 288 250 33 0 chr9 57837025 57837085 -60025542 - L2 LINE L2 -7 3265 3204 1295 195 132 71 chr9 57837234 57837937 -60024690 + L1MC5 LINE L1 7083 7828 -133 2903 209 46 89 chr9 57837971 57838352 -60024275 - MER21B LTR ERV1 -53 810 414 4846 101 3 19 chr9 57838352 57839053 -60023574 - LTR8 LTR ERV1 -1 690 1 2903 209 46 89 chr9 57839053 57839517 -60023110 - MER21B LTR ERV1 -449 414 1 273 212 24 24 chr9 57839520 57839605 -60023022 + L1MC5 LINE L1 7827 7911 -50 192 310 69 62 chr9 57839662 57839807 -60022820 - L2 LINE L2 -652 2662 2517 26 30 0 0 chr9 57840037 57840070 -60022557 + AT_rich Low_complexity Low_complexity 1 33 0 432 0 0 0 chr9 57840131 57840179 -60022448 + (CA)n Simple_repeat Simple_repeat 2 49 0 2576 104 0 3 chr9 57841607 57841963 -60020664 - THE1A LTR MaLR 0 355 1 11334 105 2 11 chr9 57841963 57843558 -60019069 - THE1A-int LTR MaLR 0 1580 1 2580 104 6 8 chr9 57843562 57843918 -60018709 - THE1A LTR MaLR 0 355 1 190 296 267 0 chr9 57844219 57844354 -60018273 + MIR3 SINE MIR 4 174 -34 687 332 40 18 chr9 57844602 57844982 -60017645 + LTR16A LTR ERVL 57 444 -6 1925 154 3 0 chr9 57845706 57845998 -60016629 - AluSx SINE Alu -19 293 1 2022 166 41 32 chr9 57846038 57846592 -60016035 - MLT2A2 LTR ERVL 0 554 2 329 91 0 18 chr9 57847416 57847471 -60015156 + (TTCC)n Simple_repeat Simple_repeat 3 56 0 2258 120 3 0 chr9 57847479 57847788 -60014839 - AluSp SINE Alu -3 310 1 2078 105 24 27 chr9 57850249 57850543 -60012084 - AluY SINE Alu -18 293 1 2263 128 22 30 chr9 57850570 57850937 -60011690 + THE1B LTR MaLR 1 364 0 1562 210 0 10 chr9 57851066 57851357 -60011270 + AluJo SINE Alu 1 288 -24 29 0 0 0 chr9 57851357 57851386 -60011241 + AT_rich Low_complexity Low_complexity 1 29 0 1770 174 21 12 chr9 57851537 57851877 -60010750 - MER61A LTR ERV1 0 343 1 25 31 0 0 chr9 57851965 57851997 -60010630 + AT_rich Low_complexity Low_complexity 1 32 0 266 301 0 10 chr9 57852768 57852871 -60009756 - L1MC4 LINE L1 -15 8027 7926 2636 101 3 8 chr9 57852946 57853312 -60009315 - THE1B LTR MaLR 0 364 1 2194 160 0 11 chr9 57853815 57854184 -60008443 - MLT1A1 LTR MaLR 0 365 1 209 239 6 153 chr9 57854851 57855014 -60007613 + MIR SINE MIR 113 251 -11 201 256 0 0 chr9 57855041 57855084 -60007543 + GA-rich Low_complexity Low_complexity 2 44 0 231 36 0 0 chr9 57855503 57855531 -60007096 + (CA)n Simple_repeat Simple_repeat 2 29 0 1008 214 172 16 chr9 57856976 57857334 -60005293 - MLT1D LTR MaLR -3 502 15 21 0 0 0 chr9 57858043 57858064 -60004563 + AT_rich Low_complexity Low_complexity 1 21 0 1184 202 92 55 chr9 57858186 57858533 -60004094 + MLT1A1 LTR MaLR 6 365 0 204 40 0 0 chr9 57858690 57858715 -60003912 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 2211 108 0 20 chr9 57858883 57859189 -60003438 + AluSq SINE Alu 1 300 -13 203 130 43 22 chr9 57860239 57860285 -60002342 + (TG)n Simple_repeat Simple_repeat 2 48 0 47 44 0 0 chr9 57862122 57862190 -60000437 + AT_rich Low_complexity Low_complexity 1 68 0 607 211 119 18 chr9 57862287 57862441 -60000186 - L1MC4 LINE L1 -100 7895 7758 1390 212 42 23 chr9 57862441 57862795 -59999832 - MER46B DNA MER2_type 0 236 1 607 211 119 18 chr9 57862795 57862833 -59999794 - L1MC4 LINE L1 -237 7758 7614 198 0 0 0 chr9 57862896 57862918 -59999709 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 975 204 37 19 chr9 57863623 57863892 -59998735 - MER33 DNA MER1_type -4 320 47 321 26 0 0 chr9 57864403 57864441 -59998186 + (TG)n Simple_repeat Simple_repeat 1 38 0 315 218 59 40 chr9 57866838 57866939 -59995688 + MLT1J LTR MaLR 406 508 -3 266 152 0 0 chr9 57867607 57867653 -59994974 - MADE1 DNA Mariner 0 80 35 3908 213 97 54 chr9 57869875 57870579 -59992048 - L1MCc LINE L1 -3406 3535 2862 2187 127 0 13 chr9 57870579 57870895 -59991732 - AluSx SINE Alu 0 312 1 3908 213 97 54 chr9 57870895 57871333 -59991294 - L1MCc LINE L1 -4079 2862 2444 2307 92 3 3 chr9 57871333 57871637 -59990990 - AluSp SINE Alu -7 306 3 3908 213 97 54 chr9 57871637 57871965 -59990662 - L1MCc LINE L1 -4497 2444 2131 1607 190 37 3 chr9 57871965 57872130 -59990497 - AluJb SINE Alu -2 310 129 2094 100 41 0 chr9 57872130 57872421 -59990206 - AluSg SINE Alu -7 303 1 1607 190 37 3 chr9 57872421 57872555 -59990072 - AluJb SINE Alu -183 129 1 3908 213 97 54 chr9 57872555 57873671 -59988956 - L1MCc LINE L1 -4810 2131 840 2251 222 54 4 chr9 57873717 57874218 -59988409 - MER74A LTR ERVL -30 528 3 1318 256 81 20 chr9 57874227 57874686 -59987941 - L1MCc LINE L1 -5596 826 3 1965 151 0 7 chr9 57876122 57876426 -59986201 - AluSx SINE Alu -10 302 1 2176 111 0 3 chr9 57876788 57877077 -59985550 - AluSx SINE Alu -22 290 3 1148 304 108 49 chr9 57877295 57878445 -59984182 - L2 LINE L2 -9 3304 2073 593 167 7 80 chr9 57879431 57879569 -59983058 - MER119 DNA MER1_type -1 582 455 222 62 0 0 chr9 57879607 57879639 -59982988 + (AATTG)n Simple_repeat Simple_repeat 2 33 0 311 214 100 0 chr9 57879670 57879740 -59982887 - MER119 DNA MER1_type -501 82 6 2263 75 10 14 chr9 57881521 57881814 -59980813 - AluY SINE Alu -19 292 1 4637 128 34 19 chr9 57881831 57882625 -59980002 - L1PA13 LINE L1 0 6163 5358 531 315 32 14 chr9 57882720 57882936 -59979691 - MIR SINE MIR -1 261 42 472 193 14 71 chr9 57883549 57883689 -59978938 - L1MA7 LINE L1 -187 6104 5973 818 189 0 0 chr9 57883692 57883835 -59978792 + L1MA7 LINE L1 5786 5928 -363 271 250 30 20 chr9 57884041 57884141 -59978486 + (TATATG)n Simple_repeat Simple_repeat 2 102 0 251 346 56 50 chr9 57884819 57884998 -59977629 + MIR SINE MIR 66 245 -17 1418 198 47 58 chr9 57885306 57885675 -59976952 - MLT1A1 LTR MaLR 0 365 8 1115 193 9 45 chr9 57886939 57887162 -59975465 - MER58A DNA MER1_type -9 215 1 271 274 30 12 chr9 57887165 57887258 -59975369 - MIR SINE MIR -62 146 64 255 125 0 0 chr9 57887899 57887939 -59974688 + (GA)n Simple_repeat Simple_repeat 2 41 0 437 217 54 16 chr9 57888239 57888368 -59974259 + MER103 DNA DNA 13 146 -20 398 292 26 39 chr9 57889640 57889794 -59972833 + L2 LINE L2 2835 2986 -327 1751 177 30 53 chr9 57889804 57890021 -59972606 - MLT1A1 LTR MaLR -2 363 156 2266 100 0 16 chr9 57890021 57890332 -59972295 - AluSg SINE Alu -4 306 1 1751 177 30 53 chr9 57890332 57890475 -59972152 - MLT1A1 LTR MaLR -209 156 11 1815 133 183 14 chr9 57890568 57890928 -59971699 + MSTA LTR MaLR 1 421 -7 320 296 17 86 chr9 57890930 57891163 -59971464 + L2 LINE L2 3087 3303 -10 590 250 14 7 chr9 57891407 57891555 -59971072 + L2 LINE L2 2673 2821 -493 1031 225 53 3 chr9 57891581 57891883 -59970744 - MER33 DNA MER1_type -2 322 6 435 18 0 0 chr9 57891997 57892053 -59970574 + L1PA4 LINE L1 5929 5984 -171 10989 141 17 28 chr9 57892573 57894494 -59968133 + Tigger1 DNA MER2_type 1 1900 -518 17783 50 12 4 chr9 57894503 57897590 -59965037 - L1PA4 LINE L1 0 6155 3050 10761 58 1 4 chr9 57897590 57898978 -59963649 + L1PA4 LINE L1 1698 3081 -3065 722 216 179 12 chr9 57899197 57899359 -59963268 - MER5A DNA MER1_type 0 189 1 23 54 0 0 chr9 57899770 57899807 -59962820 + AT_rich Low_complexity Low_complexity 1 37 0 25 0 0 0 chr9 57900398 57900423 -59962204 + AT_rich Low_complexity Low_complexity 1 25 0 239 306 47 0 chr9 57901263 57901348 -59961279 - L1MC4 LINE L1 -1340 6702 6614 * 246 105 0 0 chr9 57901342 57901380 -59961247 + L1MC4 LINE L1 6658 6695 -1347 261 0 0 0 chr9 57901538 57901567 -59961060 + (TG)n Simple_repeat Simple_repeat 2 30 0 560 291 46 15 chr9 57901619 57901847 -59960780 - MIR SINE MIR -17 245 13 811 171 144 27 chr9 57904277 57904464 -59958163 + MER3 DNA MER1_type 1 209 0 501 58 0 0 chr9 57904591 57904660 -59957967 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 2264 143 42 14 chr9 57904948 57905382 -59957245 + L1MA9 LINE L1 5858 6303 -9 1715 160 14 62 chr9 57905673 57906029 -59956598 - MER44D DNA MER2_type 0 609 1 28 29 0 0 chr9 57906181 57906216 -59956411 + AT_rich Low_complexity Low_complexity 1 35 0 323 371 54 11 chr9 57906262 57906448 -59956179 + L1M4 LINE L1 4055 4248 -1898 1950 140 0 10 chr9 57906472 57906772 -59955855 + AluSc SINE Alu 1 297 -12 490 329 97 5 chr9 57906832 57907048 -59955579 + MIR SINE MIR 21 256 -6 833 280 45 22 chr9 57907281 57907875 -59954752 + L1MEc LINE L1 2086 2646 -3569 1422 168 56 80 chr9 57907897 57908301 -59954326 - L1MCb LINE L1 -5366 679 448 202 135 0 77 chr9 57908743 57908795 -59953832 + (TATATG)n Simple_repeat Simple_repeat 6 53 0 200 345 138 17 chr9 57908953 57909069 -59953558 - L2 LINE L2 -17 3255 3126 1314 120 138 0 chr9 57909682 57909899 -59952728 + AluSc SINE Alu 55 301 -8 7245 43 17 0 chr9 57911231 57912204 -59950423 - L1PA5 LINE L1 -9 6145 5168 27 29 0 0 chr9 57912367 57912401 -59950226 + AT_rich Low_complexity Low_complexity 1 34 0 184 264 56 28 chr9 57913101 57913173 -59949454 + MIR SINE MIR 84 157 -105 203 349 67 47 chr9 57914691 57914840 -59947787 + L2 LINE L2 3121 3272 0 357 217 0 0 chr9 57915360 57915443 -59947184 + (TA)n Simple_repeat Simple_repeat 1 83 0 2269 129 74 22 chr9 57916076 57916479 -59946148 + MSTA LTR MaLR 5 428 0 614 188 17 114 chr9 57916606 57916782 -59945845 - MER45A DNA AcHobo -19 159 1 24 32 0 0 chr9 57916872 57916903 -59945724 + AT_rich Low_complexity Low_complexity 1 31 0 24 67 0 0 chr9 57917117 57917162 -59945465 + AT_rich Low_complexity Low_complexity 1 45 0 357 320 76 17 chr9 57917677 57917849 -59944778 + MIR3 SINE MIR 21 202 -6 221 316 63 25 chr9 57917932 57918011 -59944616 - L2 LINE L2 -5 3267 3186 403 326 35 0 chr9 57918409 57918550 -59944077 - MIR3 SINE MIR -5 203 58 21 0 0 0 chr9 57918897 57918918 -59943709 + AT_rich Low_complexity Low_complexity 1 21 0 375 315 34 20 chr9 57919646 57919795 -59942832 - MIR3 SINE MIR -9 199 49 1511 215 196 2 chr9 57919803 57920226 -59942401 + MLT1D LTR MaLR 1 505 0 231 322 0 0 chr9 57920489 57920548 -59942079 - L2 LINE L2 -3 3269 3211 1872 192 124 3 chr9 57920580 57920960 -59941667 - MSTB LTR MaLR 0 426 1 915 211 0 2 chr9 57921541 57921799 -59940828 + MER2 DNA MER2_type 43 345 0 242 308 11 11 chr9 57922084 57922175 -59940452 - MLT1K LTR MaLR -30 558 468 180 111 0 0 chr9 57922248 57922275 -59940352 + (T)n Simple_repeat Simple_repeat 1 27 0 917 205 79 0 chr9 57922574 57922803 -59939824 + L1P LINE L1 4795 5041 -1105 2153 109 0 0 chr9 57923857 57924141 -59938486 + AluSc SINE Alu 1 284 -25 24 53 0 0 chr9 57924199 57924237 -59938390 + AT_rich Low_complexity Low_complexity 1 38 0 964 275 20 30 chr9 57924445 57924743 -59937884 + L1MDa LINE L1 124 418 -6122 304 309 40 75 chr9 57924754 57924955 -59937672 + L1MDa LINE L1 585 778 -5762 611 264 88 21 chr9 57925120 57925359 -59937268 + L1MDa LINE L1 909 1163 -5380 320 132 171 40 chr9 57925400 57925476 -59937151 - MSTC LTR MaLR -342 86 1 527 234 7 15 chr9 57925476 57925613 -59937014 - L1MEc LINE L1 -1476 4739 4604 40782 52 33 1 chr9 57925614 57931573 -59931054 + L1PA2 LINE L1 1 6155 0 837 275 45 5 chr9 57931568 57931946 -59930681 - L1 LINE L1 -1598 4617 4225 * 1449 194 58 30 chr9 57931961 57932290 -59930337 - LTR8 LTR ERV1 0 691 354 820 55 4 71 chr9 57932290 57932549 -59930078 + (TA)n Simple_repeat Simple_repeat 1 241 0 1525 226 14 0 chr9 57932556 57932839 -59929788 - AluJo SINE Alu -25 287 1 1594 250 79 14 chr9 57932851 57933411 -59929216 - L1MEc LINE L1 -1755 4460 3865 365 311 0 0 chr9 57933446 57933552 -59929075 - L1MEc LINE L1 -3339 2876 2771 1158 291 79 40 chr9 57933553 57934309 -59928318 - L1MEc LINE L1 -4536 1860 1075 3112 47 0 0 chr9 57934312 57934697 -59927930 - L1PA3 LINE L1 -1 6154 5770 956 81 24 0 chr9 57934697 57934820 -59927807 - AluY SINE Alu -28 283 158 2536 269 46 23 chr9 57934850 57935811 -59926816 - L1MEc LINE L1 -5375 1021 39 233 227 114 34 chr9 57937045 57937133 -59925494 + MER94 DNA DNA 6 100 -34 21 36 0 0 chr9 57937321 57937349 -59925278 + AT_rich Low_complexity Low_complexity 1 28 0 543 302 30 12 chr9 57938709 57938878 -59923749 + L2 LINE L2 2705 2876 -438 912 142 0 45 chr9 57938920 57939075 -59923552 - AluSc SINE Alu -28 281 134 983 343 25 10 chr9 57939783 57940183 -59922444 + L2 LINE L2 2908 3313 0 339 258 68 8 chr9 57940263 57940395 -59922232 - L1M4 LINE L1 -1453 4693 4554 2756 198 59 167 chr9 57940542 57942366 -59920261 + L1MCa LINE L1 36 1663 -4763 * 10318 200 29 66 chr9 57942365 57945025 -59917602 + L1M2a LINE L1 1 2567 -4601 1142 116 16 0 chr9 57945038 57945227 -59917400 + L1MA6 LINE L1 6109 6300 0 8717 30 8 0 chr9 57945555 57947368 -59915259 + L1PA4 LINE L1 4335 6155 0 207 100 0 0 chr9 57947381 57947411 -59915216 + (TAGG)n Simple_repeat Simple_repeat 1 30 0 2702 112 0 3 chr9 57948304 57948680 -59913947 + THE1C LTR MaLR 1 375 0 8935 127 49 49 chr9 57948680 57948866 -59913761 + THE1C-int LTR MaLR 1 186 -1394 2083 129 0 35 chr9 57948866 57949177 -59913450 + AluSx SINE Alu 1 300 -12 8935 127 49 49 chr9 57949177 57950570 -59912057 + THE1C-int LTR MaLR 185 1580 0 2413 103 30 8 chr9 57950570 57950937 -59911690 + THE1C LTR MaLR 1 375 0 1763 97 15 0 chr9 57950937 57951196 -59911431 + THE1C-int LTR MaLR 1 263 -1317 678 175 20 83 chr9 57951196 57951426 -59911201 + THE1C LTR MaLR 205 428 0 335 307 174 31 chr9 57951437 57951724 -59910903 + L3 LINE CR1 654 981 -596 229 258 15 0 chr9 57951731 57951797 -59910830 + GA-rich Low_complexity Low_complexity 4 70 0 742 340 124 16 chr9 57951800 57952250 -59910377 + L3 LINE CR1 966 1464 -113 868 125 15 224 chr9 57952442 57952714 -59909913 + MER7C DNA MER2_type 1 215 -387 1339 184 4 9 chr9 57952789 57953022 -59909605 + AluSq SINE Alu 1 232 -81 1513 229 43 16 chr9 57953204 57953579 -59909048 - MSTB LTR MaLR -32 394 10 764 212 0 0 chr9 57953588 57953720 -59908907 + MER7C DNA MER2_type 471 602 0 333 356 40 35 chr9 57953870 57954072 -59908555 + L2 LINE L2 2871 3073 -199 31 68 0 0 chr9 57954150 57954209 -59908418 + AT_rich Low_complexity Low_complexity 1 59 0 926 211 48 118 chr9 57954706 57955104 -59907523 + MLT1B LTR MaLR 15 384 -6 230 225 0 0 chr9 57955351 57955391 -59907236 + (CACG)n Simple_repeat Simple_repeat 2 41 0 2134 124 0 7 chr9 57955963 57956262 -59906365 + AluSc SINE Alu 3 299 -10 2118 109 0 23 chr9 57957155 57957459 -59905168 - AluSc SINE Alu -12 297 1 25 0 0 0 chr9 57957763 57957788 -59904839 + AT_rich Low_complexity Low_complexity 1 25 0 1665 100 112 23 chr9 57957885 57958144 -59904483 - AluSx SINE Alu -22 290 9 430 345 29 6 chr9 57960324 57960498 -59902129 - MER117 DNA MER1_type -18 179 2 21 36 0 0 chr9 57960626 57960654 -59901973 + AT_rich Low_complexity Low_complexity 1 28 0 315 211 21 74 chr9 57961065 57961160 -59901467 + L1MC4 LINE L1 6614 6703 -1339 * 324 222 0 12 chr9 57961098 57961201 -59901426 - L1MC4 LINE L1 -1339 6703 6615 360 0 0 0 chr9 57961205 57961245 -59901382 + (CA)n Simple_repeat Simple_repeat 1 40 0 228 77 0 26 chr9 57961369 57961408 -59901219 + (TTTA)n Simple_repeat Simple_repeat 3 180 0 2527 82 3 0 chr9 57961408 57961741 -59900886 - L1PA6 LINE L1 -13 6141 5805 4346 179 38 8 chr9 57962530 57963450 -59899177 - L1MA7 LINE L1 0 6291 5400 192 40 0 0 chr9 57963450 57963475 -59899152 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 4346 179 38 8 chr9 57963475 57964392 -59898235 - L1MA7 LINE L1 -891 5400 4365 815 192 0 0 chr9 57964391 57964547 -59898080 + L1 LINE L1 2713 2868 -3278 * 25 0 0 0 chr9 57965431 57965456 -59897171 + AT_rich Low_complexity Low_complexity 1 25 0 286 272 60 76 chr9 57968678 57968862 -59893765 + L2 LINE L2 733 913 -2401 890 204 11 42 chr9 57969008 57969199 -59893428 - MER20 DNA MER1_type -30 189 5 1427 192 31 18 chr9 57970309 57970595 -59892032 + AluJo SINE Alu 5 294 -18 419 350 66 23 chr9 57970727 57970984 -59891643 + L2 LINE L2 2481 2748 -566 * 574 288 152 0 chr9 57970981 57971165 -59891462 - MIR SINE MIR 0 262 51 242 380 35 23 chr9 57971196 57971367 -59891260 + L2 LINE L2 2722 2894 -420 240 319 69 14 chr9 57971929 57972073 -59890554 - LTR68 LTR ERV1 -299 441 290 30 0 0 0 chr9 57972423 57972453 -59890174 + AT_rich Low_complexity Low_complexity 1 30 0 3588 123 8 2 chr9 57972965 57973493 -59889134 - LTR26B LTR ERV1 0 531 1 945 122 0 0 chr9 57973512 57973643 -59888984 - FLAM_C SINE Alu 0 133 3 2509 45 3 13 chr9 57973661 57973973 -59888654 - AluY SINE Alu 0 311 3 191 302 81 0 chr9 57974496 57974582 -59888045 - L2 LINE L2 -3 3310 3218 3222 113 34 12 chr9 57975276 57975779 -59886848 + MER75 DNA T2_type 1 514 0 24 0 0 0 chr9 57976017 57976041 -59886586 + AT_rich Low_complexity Low_complexity 1 24 0 287 341 7 29 chr9 57978307 57978445 -59884182 + MER117 DNA MER1_type 24 158 -39 2054 134 0 0 chr9 57978855 57979154 -59883473 + AluSx SINE Alu 1 299 -13 1385 223 42 73 chr9 57979186 57979358 -59883269 - MER63 DNA MER1_type -1 1059 883 2079 109 26 7 chr9 57979358 57979660 -59882967 - AluSx SINE Alu -4 308 1 1602 199 30 0 chr9 57979661 57979958 -59882669 - AluJb SINE Alu -6 306 1 1385 223 42 73 chr9 57979958 57980209 -59882418 - MER63 DNA MER1_type -176 884 647 698 234 102 20 chr9 57980211 57980408 -59882219 - MER58A DNA MER1_type -3 221 9 630 183 33 33 chr9 57980416 57980569 -59882058 - MER63 DNA MER1_type -405 655 503 1747 230 81 80 chr9 57980573 57981625 -59881002 + L1MC5 LINE L1 6851 7903 -58 1170 303 194 13 chr9 57981764 57981805 -59880822 + L2 LINE L2 1256 1288 -2026 1639 188 0 34 chr9 57981805 57982103 -59880524 - AluJo SINE Alu -22 290 3 1170 303 194 13 chr9 57982103 57982691 -59879936 + L2 LINE L2 1288 1999 -1315 1132 304 103 41 chr9 57982699 57983606 -59879021 + L2 LINE L2 2360 3308 -5 30 59 0 0 chr9 57986595 57986646 -59875981 + AT_rich Low_complexity Low_complexity 1 51 0 25 31 0 0 chr9 57987784 57987816 -59874811 + AT_rich Low_complexity Low_complexity 1 32 0 1075 123 0 0 chr9 57987818 57987964 -59874663 - FRAM SINE Alu -26 150 5 288 77 0 0 chr9 57987964 57988003 -59874624 + (TG)n Simple_repeat Simple_repeat 2 40 0 400 112 99 0 chr9 57988027 57988269 -59874358 + (TA)n Simple_repeat Simple_repeat 1 265 0 765 139 0 51 chr9 57988278 57988415 -59874212 - FLAM_C SINE Alu -3 130 1 649 313 51 59 chr9 57990310 57990818 -59871809 + L1MEc LINE L1 173 676 -5720 415 245 9 0 chr9 57990815 57990921 -59871706 + L1PA16 LINE L1 5936 6042 -124 * 3794 189 25 47 chr9 57990914 57991872 -59870755 + L1MA9 LINE L1 5335 6274 -38 24 67 0 0 chr9 57991872 57991917 -59870710 + AT_rich Low_complexity Low_complexity 1 45 0 485 295 51 0 chr9 57991958 57992175 -59870452 + L1MEc LINE L1 714 941 -5455 3405 227 24 52 chr9 57992193 57993663 -59868964 + L1MCb LINE L1 6 1424 -4849 1377 221 70 77 chr9 57993646 57994749 -59867878 + L1MCb LINE L1 1907 3000 -3564 * 261 357 0 8 chr9 57994824 57994950 -59867677 - L1P LINE L1 -3084 3062 2938 * 3281 188 47 20 chr9 57994948 57995698 -59866929 + L1MC2 LINE L1 5567 6336 -8 335 205 5 116 chr9 57995732 57995922 -59866705 + L1MEc LINE L1 961 1129 -5267 2112 267 75 24 chr9 57995938 57996927 -59865700 + L1MEc LINE L1 1065 2255 -3960 768 204 101 52 chr9 57996927 57997235 -59865392 + MER33 DNA MER1_type 2 324 0 2112 267 75 24 chr9 57997235 57997567 -59865060 + L1MEc LINE L1 2255 2569 -3646 809 273 61 77 chr9 57997559 57998263 -59864364 + L1MEc LINE L1 1681 2373 -4023 * 890 275 31 37 chr9 57998261 57998679 -59863948 + L1MEc LINE L1 2285 2668 -3547 644 141 0 67 chr9 57998679 57998814 -59863813 + FLAM_C SINE Alu 1 126 -17 836 180 12 160 chr9 57998815 57999215 -59863412 + L1MEc LINE L1 2662 3002 -3213 880 283 53 25 chr9 57999216 57999573 -59863054 + L2 LINE L2 2882 3248 -65 231 36 0 0 chr9 57999603 57999631 -59862996 + (CATATA)n Simple_repeat Simple_repeat 4 31 0 248 132 38 0 chr9 57999994 58000047 -59862580 - L1MC4 LINE L1 -1339 6703 6649 21 0 0 0 chr9 58002088 58002109 -59860518 + AT_rich Low_complexity Low_complexity 1 21 0 4240 175 30 1 chr9 58002354 58003404 -59859223 + L1PA15 LINE L1 4470 5544 -621 2949 182 57 29 chr9 58003404 58004163 -59858464 + LTR1B LTR ERV1 1 784 -1 3916 120 18 10 chr9 58004167 58004783 -59857844 + L1PA15 LINE L1 5545 6165 0 295 362 37 0 chr9 58004790 58005008 -59857619 + L1ME LINE L1 5632 5857 -264 253 244 26 0 chr9 58005747 58005825 -59856802 - L1ME2 LINE L1 -9 6155 6076 650 246 50 33 chr9 58005854 58006094 -59856533 - L1M4 LINE L1 -2299 3847 3604 2156 106 3 17 chr9 58006095 58006396 -59856231 - AluSp SINE Alu -16 297 1 3624 214 52 68 chr9 58006411 58007521 -59855106 - L1MC4a LINE L1 -851 6957 5865 1005 330 107 19 chr9 58007602 58008423 -59854204 - L1MEc LINE L1 -5469 927 35 386 305 32 63 chr9 58008470 58008660 -59853967 - MER91B DNA MER1_type -6 184 1 781 223 133 19 chr9 58009207 58009463 -59853164 - MLT1D LTR MaLR -158 347 63 1713 214 16 62 chr9 58009601 58010086 -59852541 + MLT1D LTR MaLR 43 505 0 244 288 55 0 chr9 58012678 58012751 -59849876 - MIR SINE MIR -30 232 156 364 228 22 0 chr9 58012765 58012857 -59849770 - LTR33A LTR ERVL 0 523 430 387 327 51 0 chr9 58012884 58013040 -59849587 - LTR50 LTR ERVL -158 637 474 1909 142 0 22 chr9 58013095 58013411 -59849216 + AluSg SINE Alu 2 310 0 379 252 21 46 chr9 58013494 58013646 -59848981 - LTR50 LTR ERVL -625 148 1 2600 55 0 3 chr9 58014340 58014652 -59847975 - AluY SINE Alu 0 311 1 224 141 0 70 chr9 58015740 58015811 -59846816 + (T)n Simple_repeat Simple_repeat 1 66 0 234 160 0 0 chr9 58016257 58016307 -59846320 + (CA)n Simple_repeat Simple_repeat 2 51 0 1092 175 5 5 chr9 58017633 58017822 -59844805 - MER5A DNA MER1_type 0 189 1 1735 198 18 53 chr9 58019128 58019527 -59843100 + MLT1B LTR MaLR 1 385 -5 424 283 26 20 chr9 58020441 58020593 -59842034 - MIR SINE MIR -14 248 96 3748 53 4 4 chr9 58020770 58021241 -59841386 + L1PA7 LINE L1 5684 6154 0 188 401 69 9 chr9 58025298 58025515 -59837112 + L2 LINE L2 3023 3252 -61 553 292 96 0 chr9 58025521 58025699 -59836928 - MER58C DNA MER1_type -2 213 19 1451 307 47 63 chr9 58026180 58027109 -59835518 + L1ME1 LINE L1 24 937 -5486 619 246 96 25 chr9 58027144 58027343 -59835284 + MER58C DNA MER1_type 2 214 -1 1092 249 48 52 chr9 58027343 58027842 -59834785 + L1ME1 LINE L1 1007 1503 -4920 929 212 49 0 chr9 58027844 58028028 -59834599 + MLT1D LTR MaLR 311 503 -2 502 269 25 30 chr9 58028030 58028227 -59834400 + L1ME1 LINE L1 4513 4708 -2233 1153 193 151 4 chr9 58028227 58028492 -59834135 + MLT2D LTR ERVL 1 304 -110 2527 260 123 29 chr9 58028492 58028608 -59834019 + L1ME1 LINE L1 4918 5022 -1939 5754 44 7 3 chr9 58028608 58029330 -59833297 + L1PA4 LINE L1 5427 6151 -4 2527 260 123 29 chr9 58029330 58031075 -59831552 + L1ME1 LINE L1 5022 6956 -5 504 0 0 0 chr9 58031292 58031348 -59831279 + (TTTA)n Simple_repeat Simple_repeat 2 57 0 2059 53 72 4 chr9 58031350 58031612 -59831015 - AluY SINE Alu -31 280 1 199 247 27 55 chr9 58031622 58031695 -59830932 - MIR SINE MIR -122 140 70 3484 208 57 10 chr9 58032388 58033333 -59829294 - L1MB8 LINE L1 -12 6977 5983 24 32 0 0 chr9 58033387 58033418 -59829209 + AT_rich Low_complexity Low_complexity 1 31 0 2194 103 0 3 chr9 58033418 58033728 -59828899 - L1PB1 LINE L1 -3 6148 5840 746 110 7 69 chr9 58033728 58033873 -59828754 + L1P5 LINE L1 5657 5792 -359 254 203 0 16 chr9 58033876 58033940 -59828687 + (TA)n Simple_repeat Simple_repeat 1 63 0 265 81 0 81 chr9 58033940 58034002 -59828625 - LTR66 LTR ERVL -171 439 383 249 53 26 0 chr9 58034002 58034040 -59828587 + L1P5 LINE L1 5799 5837 -314 * 2024 233 37 70 chr9 58034038 58034645 -59827982 - L1MB8 LINE L1 -947 6010 5436 1487 184 0 65 chr9 58034645 58034954 -59827673 + AluJb SINE Alu 11 299 -13 2024 233 37 70 chr9 58034954 58035178 -59827449 - L1MB8 LINE L1 -1521 5436 5206 * 5027 153 26 16 chr9 58035166 58036108 -59826519 - L1PA13 LINE L1 -15 6148 5196 395 174 101 18 chr9 58036077 58036186 -59826441 - L1P LINE L1 -816 5330 5213 * 26 0 0 0 chr9 58036245 58036271 -59826356 + AT_rich Low_complexity Low_complexity 1 26 0 1544 197 21 10 chr9 58036271 58036560 -59826067 - AluJb SINE Alu -17 295 4 1314 228 53 11 chr9 58036563 58036923 -59825704 - L1MB8 LINE L1 -1782 5175 4801 * 3296 259 48 11 chr9 58036920 58037745 -59824882 - L1MB8 LINE L1 -5998 861 6 35405 49 1 1 chr9 58038409 58042852 -59819775 - L1PA4 LINE L1 -1293 4853 410 7519 27 7 0 chr9 58042852 58044135 -59818492 + L1PA4 LINE L1 4854 6153 -2 878 271 57 59 chr9 58045343 58045783 -59816844 - HAL1b LINE L1 -671 677 239 499 293 112 11 chr9 58048572 58048644 -59813983 + L2 LINE L2 1835 1898 -1416 1240 175 52 62 chr9 58048644 58048935 -59813692 + AluJo SINE Alu 5 292 -20 499 293 112 11 chr9 58048935 58049050 -59813577 + L2 LINE L2 1898 2041 -1273 371 149 60 0 chr9 58049055 58049122 -59813505 + MLT2A2 LTR ERVL 286 356 -97 485 301 57 24 chr9 58049153 58049362 -59813265 + L2 LINE L2 2063 2278 -1036 2217 116 0 0 chr9 58049380 58049683 -59812944 - AluY SINE Alu -8 303 1 1248 218 0 8 chr9 58049703 58049946 -59812681 - AluJo SINE Alu -71 241 1 313 321 27 0 chr9 58049946 58050058 -59812569 + L2 LINE L2 2296 2410 -904 2253 148 34 31 chr9 58050068 58050619 -59812008 - MLT2A2 LTR ERVL 0 554 1 1065 289 83 23 chr9 58050626 58051341 -59811286 + L2 LINE L2 2428 3151 -162 258 253 0 0 chr9 58051341 58051424 -59811203 + (CA)n Simple_repeat Simple_repeat 2 84 0 435 272 30 41 chr9 58051427 58051596 -59811031 + L2 LINE L2 3146 3312 -1 2238 132 0 0 chr9 58053173 58053484 -59809143 + AluSx SINE Alu 1 311 -1 221 271 0 0 chr9 58053532 58053580 -59809047 - L2 LINE L2 -8 3305 3258 3796 173 14 9 chr9 58054008 58054697 -59807930 - L1MC1 LINE L1 -129 6204 5512 38 68 0 0 chr9 58054801 58054874 -59807753 + AT_rich Low_complexity Low_complexity 1 73 0 274 335 144 34 chr9 58055701 58056083 -59806544 - LTR33A LTR ERVL -45 478 55 23 78 0 0 chr9 58057231 58057282 -59805345 + AT_rich Low_complexity Low_complexity 1 51 0 1371 181 13 106 chr9 58057551 58057825 -59804802 - MLT1A2 LTR MaLR -19 355 126 1020 152 6 0 chr9 58057825 58057996 -59804631 - L1PA8 LINE L1 0 6172 6001 1371 181 13 106 chr9 58057996 58058108 -59804519 - MLT1A2 LTR MaLR -248 126 5 23 33 0 0 chr9 58058604 58058634 -59803993 + AT_rich Low_complexity Low_complexity 1 30 0 999 266 114 19 chr9 58058859 58059228 -59803399 - MLT1J2 LTR MaLR -30 420 17 22 35 0 0 chr9 58059343 58059372 -59803255 + AT_rich Low_complexity Low_complexity 1 29 0 641 249 89 0 chr9 58059845 58060014 -59802613 - MER3 DNA MER1_type 0 209 26 21 57 0 0 chr9 58061335 58061370 -59801257 + AT_rich Low_complexity Low_complexity 1 35 0 286 396 0 9 chr9 58062117 58062223 -59800404 + L2 LINE L2 3119 3223 -49 300 243 117 19 chr9 58063454 58063557 -59799070 + MIR SINE MIR 110 222 -40 508 239 8 39 chr9 58063732 58063862 -59798765 - L2 LINE L2 0 3313 3188 266 299 85 49 chr9 58063940 58064164 -59798463 - L2 LINE L2 -1304 2010 1779 225 305 84 21 chr9 58064214 58064309 -59798318 - L2 LINE L2 -230 3042 2942 769 305 91 3 chr9 58064554 58064905 -59797722 - MLT1H LTR MaLR -46 503 122 40 59 0 0 chr9 58066437 58066505 -59796122 + AT_rich Low_complexity Low_complexity 1 68 0 22 35 0 0 chr9 58067285 58067314 -59795313 + AT_rich Low_complexity Low_complexity 1 29 0 587 281 30 0 chr9 58068202 58068369 -59794258 + MER45A DNA AcHobo 6 177 -1 849 151 92 85 chr9 58068474 58068791 -59793836 - MER33 DNA MER1_type 0 324 6 590 345 61 48 chr9 58069871 58070346 -59792281 - L3 LINE CR1 -121 1456 976 24 53 0 0 chr9 58070438 58070476 -59792151 + AT_rich Low_complexity Low_complexity 1 38 0 2137 79 0 4 chr9 58070476 58070743 -59791884 - AluY SINE Alu -24 287 22 290 328 97 86 chr9 58071597 58071865 -59790762 + L2 LINE L2 2997 3267 -5 350 289 122 42 chr9 58072201 58072880 -59789747 - L1M4 LINE L1 -2168 3978 3355 1568 127 5 5 chr9 58072880 58073100 -59789527 - AluSc SINE Alu -7 302 83 350 289 122 42 chr9 58073100 58073131 -59789496 - L1M4 LINE L1 -2791 3355 3328 2216 135 16 24 chr9 58073131 58073509 -59789118 + THE1C LTR MaLR 1 375 0 350 289 122 42 chr9 58073509 58074149 -59788478 - L1M4 LINE L1 -2818 3328 2519 263 288 50 0 chr9 58075107 58075187 -59787440 + MIR SINE MIR 79 162 -100 796 323 89 30 chr9 58075587 58076316 -59786311 - L2 LINE L2 0 3313 2537 357 194 100 39 chr9 58076428 58076573 -59786054 + Charlie8 DNA MER1_type 26 178 -2239 34 24 0 0 chr9 58076861 58076902 -59785725 + AT_rich Low_complexity Low_complexity 1 41 0 2432 64 0 46 chr9 58077901 58078227 -59784400 - AluY SINE Alu 0 311 1 468 296 90 39 chr9 58079968 58080201 -59782426 - L1ME4a LINE L1 -276 5845 5601 263 330 21 56 chr9 58081731 58082019 -59780608 + HERV16 LTR ERVL 4719 4996 0 452 308 36 53 chr9 58082069 58082426 -59780201 + LTR16A LTR ERVL 52 402 -48 428 317 108 8 chr9 58082670 58083039 -59779588 - HAL1 LINE L1 -1067 1440 1035 21 71 0 0 chr9 58083056 58083098 -59779529 + AT_rich Low_complexity Low_complexity 1 42 0 6927 37 5 3 chr9 58083138 58084024 -59778603 - L1PA7 LINE L1 -7 6147 5261 840 207 60 0 chr9 58084024 58084403 -59778224 + L1MDa LINE L1 2114 2613 -3927 2772 162 85 16 chr9 58084431 58085059 -59777568 + L1MC1 LINE L1 5657 6331 -2 3704 225 18 2 chr9 58085120 58086018 -59776609 + L1MC3 LINE L1 6866 7777 -8 1696 253 31 34 chr9 58086035 58086806 -59775821 + L1MDa LINE L1 2637 3376 -3164 4633 233 61 33 chr9 58087645 58089520 -59773107 + L1MDa LINE L1 3563 5552 -1084 1965 132 59 34 chr9 58089520 58089875 -59772752 - THE1B LTR MaLR 0 364 1 4633 233 61 33 chr9 58089875 58090541 -59772086 + L1MDa LINE L1 5552 6198 -438 30 27 0 0 chr9 58090987 58091024 -59771603 + AT_rich Low_complexity Low_complexity 1 37 0 298 321 234 0 chr9 58091189 58091441 -59771186 - L2 LINE L2 -13 3300 2990 467 328 124 35 chr9 58091453 58091791 -59770836 + L2 LINE L2 2521 2888 -426 252 354 61 0 chr9 58092028 58092127 -59770500 + L2 LINE L2 3168 3272 0 1030 84 8 0 chr9 58092303 58092434 -59770193 - AluYb8 SINE Alu -186 132 1 1816 175 46 0 chr9 58093049 58093374 -59769253 + MER58B DNA MER1_type 2 341 0 354 335 95 0 chr9 58093873 58094031 -59768596 - MIR3 SINE MIR -10 198 26 24 0 0 0 chr9 58094177 58094201 -59768426 + AT_rich Low_complexity Low_complexity 1 24 0 1435 196 60 11 chr9 58094755 58095036 -59767591 - AluJo SINE Alu -17 295 1 318 106 0 0 chr9 58096373 58096420 -59766207 + (TG)n Simple_repeat Simple_repeat 1 47 0 390 308 26 20 chr9 58096740 58096935 -59765692 + MER89-int LTR ERV1 3070 3265 -3536 267 238 16 0 chr9 58097968 58098031 -59764596 - MLT1B LTR MaLR -321 69 6 435 305 21 21 chr9 58098427 58098617 -59764010 + L1MEc LINE L1 390 579 -5817 802 158 11 79 chr9 58098689 58098879 -59763748 - MER4A LTR ERV1 -110 554 378 227 250 0 0 chr9 58101418 58101498 -59761129 + L1MA7 LINE L1 6202 6281 -10 4705 82 3 2 chr9 58101973 58102606 -59760021 - L1PA7 LINE L1 -3 6151 5518 502 332 75 10 chr9 58102943 58103142 -59759485 + MIR SINE MIR 2 213 -49 1585 93 0 40 chr9 58103147 58103372 -59759255 + AluSq SINE Alu 1 216 -97 366 289 91 0 chr9 58104165 58104352 -59758275 - L1MCb LINE L1 -5643 402 199 1883 241 27 22 chr9 58104353 58104950 -59757677 - MER49 LTR ERV1 -2 921 322 2646 84 16 3 chr9 58106298 58106666 -59755961 + MLT2A2 LTR ERVL 34 406 -47 25 31 0 0 chr9 58106666 58106698 -59755929 + AT_rich Low_complexity Low_complexity 1 32 0 245 93 47 0 chr9 58106704 58106747 -59755880 - MLT2A1 LTR ERVL -10 434 390 303 28 0 0 chr9 58108218 58108254 -59754373 + (CA)n Simple_repeat Simple_repeat 2 37 0 1691 225 22 11 chr9 58108527 58108972 -59753655 - L1 LINE L1 -2248 4540 4091 467 277 36 0 chr9 58108964 58109101 -59753526 - L1 LINE L1 -6105 684 543 * 454 331 28 52 chr9 58109435 58109722 -59752905 + L1ME3A LINE L1 5684 5963 -207 547 215 37 18 chr9 58110633 58110796 -59751831 + L1MC1 LINE L1 6161 6326 -7 394 264 35 5 chr9 58110794 58110961 -59751666 + L1MC/D LINE L1 5547 5713 -631 * 2130 153 22 8 chr9 58110961 58111320 -59751307 + THE1B LTR MaLR 1 364 0 24 0 0 0 chr9 58111364 58111388 -59751239 + AT_rich Low_complexity Low_complexity 1 24 0 8911 48 0 0 chr9 58112335 58113516 -59749111 + L1P2 LINE L1 1921 3101 -3045 11082 44 5 0 chr9 58113625 58115156 -59747471 + L1P2 LINE L1 3961 5496 -659 310 299 10 0 chr9 58115345 58115442 -59747185 + L1MB5 LINE L1 5661 5758 -416 1290 228 62 25 chr9 58115658 58116013 -59746614 + L1MB5 LINE L1 5807 6174 0 2115 115 3 3 chr9 58116284 58116572 -59746055 - AluSq SINE Alu -25 288 1 180 0 0 0 chr9 58116585 58116605 -59746022 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2282 48 0 4 chr9 58116609 58116880 -59745747 - AluY SINE Alu -35 276 7 664 287 121 24 chr9 58117134 58117514 -59745113 - L2 LINE L2 -1 3312 2896 418 220 28 37 chr9 58117892 58118001 -59744626 - Charlie8 DNA MER1_type -2291 126 19 228 208 21 0 chr9 58118151 58118199 -59744428 - L2 LINE L2 -23 3290 3242 343 163 47 58 chr9 58118247 58118333 -59744294 + MIR SINE MIR 40 124 -84 617 165 0 0 chr9 58118684 58118781 -59743846 + MER45A DNA AcHobo 73 169 -9 361 191 48 30 chr9 58118965 58119133 -59743494 + (TA)n Simple_repeat Simple_repeat 1 171 0 232 219 66 7 chr9 58119163 58119300 -59743327 + (TA)n Simple_repeat Simple_repeat 1 145 0 229 202 58 46 chr9 58119335 58119508 -59743119 + (TATATG)n Simple_repeat Simple_repeat 5 179 0 421 76 0 68 chr9 58119533 58119651 -59742976 + (CAGC)n Simple_repeat Simple_repeat 2 111 0 366 283 127 74 chr9 58119657 58120686 -59741941 + L1M2 LINE L1 702 1450 -5399 842 69 0 66 chr9 58120686 58121341 -59741286 + (CAGC)n Simple_repeat Simple_repeat 1 611 0 326 256 129 94 chr9 58121543 58122051 -59740576 - L1M2 LINE L1 -5394 1455 855 842 58 0 54 chr9 58122054 58122294 -59740333 + (GCTG)n Simple_repeat Simple_repeat 1 226 0 790 49 0 67 chr9 58122312 58122584 -59740043 + (GCTG)n Simple_repeat Simple_repeat 1 253 0 490 268 132 87 chr9 58122600 58122915 -59739712 - L1M2 LINE L1 -5394 1455 1156 240 56 0 56 chr9 58122915 58122969 -59739658 + (GCTG)n Simple_repeat Simple_repeat 4 54 0 490 268 132 87 chr9 58122969 58125034 -59737593 - L1M2 LINE L1 -5693 1156 528 225 0 0 0 chr9 58125208 58125233 -59737394 + (CA)n Simple_repeat Simple_repeat 2 26 0 2626 223 51 34 chr9 58125244 58126216 -59736411 - L1MC4 LINE L1 -1339 7121 3259 1838 179 0 19 chr9 58126241 58126559 -59736068 - AluJb SINE Alu 0 312 1 1055 191 29 14 chr9 58126572 58126781 -59735846 - AluJb SINE Alu -11 301 90 299 234 0 16 chr9 58126781 58126845 -59735782 - LTR3b LTR ERVK 0 500 438 * 3324 124 14 6 chr9 58126827 58127319 -59735308 - LTR3b LTR ERVK -4 496 1 593 183 11 0 chr9 58127319 58127412 -59735215 - AluJb SINE Alu -217 95 2 1226 245 18 50 chr9 58127413 58127813 -59734814 - L1MC4 LINE L1 -3296 3268 2882 2874 227 64 35 chr9 58127880 58129545 -59733082 + L1ME1 LINE L1 4448 6162 -4 760 266 91 67 chr9 58129558 58130140 -59732487 + HAL1 LINE L1 1911 2506 -1 2155 352 40 20 chr9 58131868 58133151 -59729476 - HERV16 LTR ERVL -2092 3672 2364 705 264 0 0 chr9 58133198 58133361 -59729266 - HERV16 LTR ERVL -4573 423 261 682 276 108 82 chr9 58133435 58133961 -59728666 + MLT1F LTR MaLR 3 542 0 1050 219 24 28 chr9 58133986 58134274 -59728353 + L1MB8 LINE L1 5892 6178 0 793 264 81 23 chr9 58134267 58134589 -59728038 + L1MC2 LINE L1 3 287 -5758 * 342 225 0 6 chr9 58134591 58134668 -59727959 - L1MC4 LINE L1 -5771 274 215 1360 203 20 4 chr9 58134668 58134919 -59727708 - MLT1A1 LTR MaLR 0 365 111 1072 153 17 0 chr9 58134969 58135146 -59727481 + L1MB1 LINE L1 5986 6165 -3 640 251 33 43 chr9 58135353 58135569 -59727058 + L1MC2 LINE L1 275 675 -5588 * 4453 209 125 35 chr9 58135565 58136217 -59726410 + L1MC2 LINE L1 523 1115 -5449 3954 62 0 0 chr9 58136217 58136681 -59725946 + L1PA7 LINE L1 5687 6150 -4 4453 209 125 35 chr9 58136681 58137934 -59724693 + L1MC2 LINE L1 1115 2604 -3960 4693 234 39 55 chr9 58137939 58138377 -59724250 + L1MC2 LINE L1 2662 3105 -3459 2183 96 0 0 chr9 58138377 58138682 -59723945 - AluSg1 SINE Alu 0 305 1 4693 234 39 55 chr9 58138682 58139919 -59722708 + L1MC2 LINE L1 3105 4312 -2252 1460 241 21 16 chr9 58139923 58140347 -59722280 + L1MC2 LINE L1 5055 5480 -1084 2744 78 131 5 chr9 58140352 58140750 -59721877 + LTR7 LTR ERV1 1 448 -2 20077 173 84 44 chr9 58140752 58145702 -59716925 + HERVH LTR ERV1 1 5149 -2564 1427 118 17 38 chr9 58145682 58145919 -59716708 + HERVH LTR ERV1 5588 5819 -1894 * 2455 103 45 13 chr9 58145917 58146297 -59716330 + HERVH LTR ERV1 7322 7713 0 2446 100 127 34 chr9 58146297 58146707 -59715920 + LTR7 LTR ERV1 1 448 -2 4972 197 48 3 chr9 58146712 58147940 -59714687 + L1MC2 LINE L1 5484 6762 0 23 0 0 0 chr9 58148207 58148230 -59714397 + AT_rich Low_complexity Low_complexity 1 23 0 198 0 0 0 chr9 58149026 58149048 -59713579 + (TG)n Simple_repeat Simple_repeat 1 22 0 * 210 37 0 0 chr9 58149047 58149074 -59713553 + (GA)n Simple_repeat Simple_repeat 1 27 0 539 278 102 45 chr9 58150656 58150922 -59711705 + L2 LINE L2 3033 3313 0 208 267 147 0 chr9 58151175 58151250 -59711377 + L2 LINE L2 3190 3275 -38 483 199 129 30 chr9 58151313 58151514 -59711113 - LTR50 LTR ERVL 0 795 575 590 253 97 0 chr9 58151628 58151814 -59710813 - LTR50 LTR ERVL -591 204 1 560 309 94 55 chr9 58153359 58153689 -59708938 + MLT1J2 LTR MaLR 1 343 -107 1445 225 39 15 chr9 58154039 58154372 -59708255 - MER58B DNA MER1_type 0 341 1 2114 213 28 77 chr9 58154846 58155420 -59707207 + MLT2B3 LTR ERVL 9 554 0 623 67 11 0 chr9 58155645 58155734 -59706893 + (TAGA)n Simple_repeat Simple_repeat 3 92 0 758 236 17 6 chr9 58155734 58155912 -59706715 - MER58A DNA MER1_type -4 220 41 269 353 94 68 chr9 58156061 58156327 -59706300 + L2 LINE L2 2992 3264 -8 22 0 0 0 chr9 58157165 58157187 -59705440 + AT_rich Low_complexity Low_complexity 1 22 0 3588 199 45 28 chr9 58157390 58157523 -59705104 + L1MB8 LINE L1 5339 5468 -710 324 0 0 0 chr9 58157523 58157559 -59705068 + (TAA)n Simple_repeat Simple_repeat 2 37 0 3588 199 45 28 chr9 58157559 58158145 -59704482 + L1MB8 LINE L1 5468 6076 -102 2632 55 0 0 chr9 58158145 58158452 -59704175 - AluY SINE Alu -4 307 1 3588 199 45 28 chr9 58158452 58158557 -59704070 + L1MB8 LINE L1 6076 6178 0 336 297 40 10 chr9 58159507 58159608 -59703019 + MIR3 SINE MIR 87 190 -18 194 103 0 26 chr9 58160100 58160139 -59702488 + (TTATA)n Simple_repeat Simple_repeat 1 38 0 37 76 0 0 chr9 58160139 58160218 -59702409 + AT_rich Low_complexity Low_complexity 1 79 0 1681 236 126 21 chr9 58161568 58162085 -59700542 - MLT1E2 LTR MaLR -10 644 92 1148 200 97 74 chr9 58163317 58163707 -59698920 + MER57A LTR ERV1 1 399 -4 286 303 28 18 chr9 58164847 58164956 -59697671 + GA-rich Low_complexity Low_complexity 4 113 0 409 298 11 39 chr9 58165805 58165986 -59696641 - MER117 DNA MER1_type -17 180 5 21 0 0 0 chr9 58166789 58166810 -59695817 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr9 58167192 58167216 -59695411 + AT_rich Low_complexity Low_complexity 1 24 0 240 200 0 0 chr9 58167233 58167283 -59695344 + (TA)n Simple_repeat Simple_repeat 1 50 0 306 270 0 0 chr9 58167292 58167381 -59695246 - L1MC4 LINE L1 -1339 6703 6615 212 364 45 18 chr9 58167895 58168005 -59694622 - L2 LINE L2 -197 3075 2963 308 332 135 5 chr9 58168233 58168426 -59694201 + MIR SINE MIR 43 260 -2 192 346 37 22 chr9 58168482 58168618 -59694009 + MIR SINE MIR 82 219 -43 183 304 54 22 chr9 58168708 58168800 -59693827 - MIR SINE MIR 0 262 168 547 302 35 6 chr9 58169577 58169749 -59692878 - MIR SINE MIR -66 196 20 648 266 95 27 chr9 58169855 58170118 -59692509 + L2 LINE L2 1928 2208 -1106 1020 222 39 98 chr9 58170121 58170562 -59692065 - L1MA9 LINE L1 -25 6287 5873 1000 284 121 11 chr9 58170567 58171021 -59691606 + L2 LINE L2 2216 2719 -595 890 275 86 65 chr9 58171033 58171498 -59691129 + L2 LINE L2 2829 3303 -10 29 28 0 0 chr9 58173628 58173664 -59688963 + AT_rich Low_complexity Low_complexity 1 36 0 270 325 52 18 chr9 58174304 58174453 -59688174 + MIR SINE MIR 40 195 -64 2560 235 75 30 chr9 58175989 58177441 -59685186 + L1ME1 LINE L1 4611 6148 -18 625 247 0 19 chr9 58179908 58180070 -59682557 + MER104 DNA Tc2 1 159 -21 311 261 36 18 chr9 58180141 58180252 -59682375 - MIR SINE MIR -148 114 2 957 216 33 5 chr9 58180613 58180826 -59681801 - MER20 DNA MER1_type 0 219 1 188 182 0 0 chr9 58181551 58181584 -59681043 - L2 LINE L2 0 3313 3281 2490 61 3 3 chr9 58181827 58182138 -59680489 + AluY SINE Alu 1 311 0 319 244 7 104 chr9 58182190 58182325 -59680302 - MIR SINE MIR -70 192 71 502 365 67 47 chr9 58183477 58184265 -59678362 + L2 LINE L2 2127 2930 -384 789 277 137 24 chr9 58184583 58185074 -59677553 + Tigger8 DNA MER2_type 102 647 -19 227 233 35 35 chr9 58185103 58185189 -59677438 + L1MC/D LINE L1 5725 5810 -523 213 180 33 0 chr9 58185289 58185350 -59677277 + (TA)n Simple_repeat Simple_repeat 1 63 0 1530 312 51 16 chr9 58185734 58186225 -59676402 + MLT2E LTR ERVL 3 510 -118 277 315 45 36 chr9 58186596 58186707 -59675920 - MER5A DNA MER1_type -35 154 43 2178 62 0 11 chr9 58187372 58187644 -59674983 + AluY SINE Alu 37 305 -6 1983 211 36 8 chr9 58187657 58188071 -59674556 + MLT2C2 LTR ERVL 1 479 -41 775 212 252 61 chr9 58188156 58188565 -59674062 + MLT1G1 LTR MaLR 56 536 -6 25 0 0 0 chr9 58188698 58188723 -59673904 + AT_rich Low_complexity Low_complexity 1 25 0 29 0 0 0 chr9 58190578 58190607 -59672020 + AT_rich Low_complexity Low_complexity 1 29 0 205 156 62 16 chr9 58190990 58191054 -59671573 + (TCTA)n Simple_repeat Simple_repeat 2 68 0 1089 240 67 41 chr9 58191204 58191546 -59671081 - MER87 LTR ERV1 -23 518 168 20448 161 35 10 chr9 58191792 58193259 -59669368 - L1MA2 LINE L1 0 7723 6295 2458 115 27 3 chr9 58193259 58193625 -59669002 + THE1C LTR MaLR 1 375 0 8391 126 77 44 chr9 58193627 58195157 -59667470 + THE1C-int LTR MaLR 2 1580 0 2436 116 16 8 chr9 58195157 58195527 -59667100 + THE1C LTR MaLR 1 373 -2 20448 161 35 10 chr9 58195527 58198821 -59663806 - L1MA2 LINE L1 -1428 6295 2671 342 0 0 0 chr9 58198821 58198859 -59663768 + (TTG)n Simple_repeat Simple_repeat 2 39 0 20448 161 35 10 chr9 58198859 58201585 -59661042 - L1MA2 LINE L1 -5052 2671 16 2101 134 0 3 chr9 58201591 58201943 -59660684 - AluSq SINE Alu 0 351 1 28 0 0 0 chr9 58202662 58202690 -59659937 + AT_rich Low_complexity Low_complexity 1 28 0 220 204 0 0 chr9 58206013 58206057 -59656570 + A-rich Low_complexity Low_complexity 5 48 0 436 337 25 18 chr9 58209665 58209828 -59652799 - MIR SINE MIR -97 165 2 2114 169 8 20 chr9 58212156 58212547 -59650080 - MLT1B LTR MaLR -2 388 3 203 216 20 20 chr9 58213706 58213757 -59648870 + (CATATA)n Simple_repeat Simple_repeat 6 56 0 304 260 210 14 chr9 58213794 58214013 -59648614 - L1M4c LINE L1 -5029 1355 1094 1323 220 107 75 chr9 58216614 58217215 -59645412 + MLT1E3 LTR MaLR 5 624 0 703 152 8 0 chr9 58218153 58218285 -59644342 - L1MB7 LINE L1 -12 6172 6040 3599 144 81 23 chr9 58218390 58218560 -59644067 - L1MA9 LINE L1 -281 6031 5872 2309 120 17 3 chr9 58218560 58218909 -59643718 + THE1A LTR MaLR 1 354 -1 3599 144 81 23 chr9 58218909 58219955 -59642672 - L1MA9 LINE L1 -440 5872 4738 322 227 188 25 chr9 58220009 58220291 -59642336 + HAL1 LINE L1 1978 2305 -202 472 284 79 38 chr9 58220293 58220585 -59642042 - MLT1H LTR MaLR -4 545 242 525 225 21 21 chr9 58220653 58220795 -59641832 - MLT1H LTR MaLR -396 153 12 258 176 0 0 chr9 58220855 58220906 -59641721 + (TA)n Simple_repeat Simple_repeat 1 51 0 1521 213 27 17 chr9 58222639 58222935 -59639692 + AluJb SINE Alu 1 299 -13 23 78 0 0 chr9 58223160 58223211 -59639416 + AT_rich Low_complexity Low_complexity 1 51 0 198 234 75 65 chr9 58225910 58226017 -59636610 + L2 LINE L2 2590 2697 -617 1818 171 4 0 chr9 58227204 58227516 -59635111 + AluJb SINE Alu 1 313 0 2329 92 7 3 chr9 58228529 58228835 -59633792 + AluSq SINE Alu 1 307 -6 619 197 98 45 chr9 58228835 58229022 -59633605 + MIR SINE MIR 60 256 -6 382 229 10 42 chr9 58229538 58229634 -59632993 - MER57A-int LTR ERV1 -1776 5761 5669 6787 186 156 26 chr9 58229634 58229836 -59632791 - MER52A LTR ERV1 0 1755 1581 2401 110 19 16 chr9 58229836 58230199 -59632428 + THE1B LTR MaLR 1 364 0 6787 186 156 26 chr9 58230199 58231549 -59631078 - MER52A LTR ERV1 -174 1581 1 1220 247 20 47 chr9 58231549 58231994 -59630633 - MER57A-int LTR ERV1 -1865 5672 5240 875 212 153 81 chr9 58232130 58232733 -59629894 - MER57A-int LTR ERV1 -1720 4611 3966 464 261 89 52 chr9 58232737 58233262 -59629365 - MER57A-int LTR ERV1 -1708 3172 1538 305 314 161 15 chr9 58233500 58233637 -59628990 + L2 LINE L2 3116 3272 0 261 301 6 45 chr9 58233902 58234058 -59628569 - MER57A-int LTR ERV1 -2382 2489 2340 474 292 142 9 chr9 58234464 58234683 -59627944 - MER34C LTR ERV1 -180 405 158 252 313 8 30 chr9 58234925 58235056 -59627571 + CT-rich Low_complexity Low_complexity 1 128 0 233 321 18 24 chr9 58235100 58235265 -59627362 + CT-rich Low_complexity Low_complexity 4 167 0 207 0 0 0 chr9 58236410 58236433 -59626194 + (A)n Simple_repeat Simple_repeat 1 23 0 613 300 28 28 chr9 58236663 58236910 -59625717 - MER57A-int LTR ERV1 -7288 249 3 463 244 188 34 chr9 58236916 58236972 -59625655 - MER57A LTR ERV1 -2 401 355 195 69 0 0 chr9 58236972 58237001 -59625626 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 463 244 188 34 chr9 58237001 58237178 -59625449 - MER57A LTR ERV1 -48 355 132 386 188 75 0 chr9 58237191 58237271 -59625356 - LTR54 LTR ERV1 -424 86 1 294 304 56 16 chr9 58237701 58237826 -59624801 + LTR16A1 LTR ERVL 262 391 -66 379 296 11 0 chr9 58237900 58237988 -59624639 + MER5A DNA MER1_type 9 97 -92 896 273 58 53 chr9 58238028 58238439 -59624188 + LTR16A1 LTR ERVL 45 457 0 1808 310 75 36 chr9 58238612 58239559 -59623068 + HERV16 LTR ERVL 198 1198 -3798 2209 155 27 50 chr9 58239559 58240003 -59622624 + Tigger2a DNA MER2_type 1 434 0 1808 310 75 36 chr9 58240003 58240209 -59622418 + HERV16 LTR ERVL 1198 1395 -3601 479 304 21 5 chr9 58240289 58240480 -59622147 + HERV16 LTR ERVL 1598 1791 -3205 696 155 0 0 chr9 58240495 58240598 -59622029 + FLAM_A SINE Alu 18 120 -22 261 0 0 0 chr9 58240666 58240695 -59621932 + (TA)n Simple_repeat Simple_repeat 1 29 0 * 297 0 0 0 chr9 58240694 58240727 -59621900 + (GA)n Simple_repeat Simple_repeat 2 34 0 2125 102 0 0 chr9 58240729 58241003 -59621624 - AluSg SINE Alu -36 274 1 25 0 0 0 chr9 58241003 58241028 -59621599 + AT_rich Low_complexity Low_complexity 1 25 0 881 309 92 23 chr9 58241047 58241559 -59621068 + HERV16 LTR ERVL 1856 2402 -2594 402 342 7 7 chr9 58241978 58242133 -59620494 + HERV16 LTR ERVL 2942 3096 -1900 1263 349 29 20 chr9 58242607 58243461 -59619166 + HERV16 LTR ERVL 3592 4453 -1201 312 291 108 78 chr9 58243656 58243914 -59618713 + LTR16A1 LTR ERVL 2 267 -190 1709 180 24 10 chr9 58243968 58244257 -59618370 - AluJo SINE Alu -19 293 1 2519 59 0 10 chr9 58244324 58244629 -59617998 + AluY SINE Alu 1 302 -9 231 243 27 14 chr9 58244874 58244948 -59617679 + (TATG)n Simple_repeat Simple_repeat 4 78 0 663 190 50 67 chr9 58245022 58245099 -59617528 - MER45A DNA AcHobo -1405 176 99 2835 10 0 0 chr9 58245099 58245407 -59617220 + AluYa5 SINE Alu 1 308 -3 663 190 50 67 chr9 58245407 58245508 -59617119 - MER45A DNA AcHobo -1482 99 1 22 35 0 0 chr9 58245914 58245943 -59616684 + AT_rich Low_complexity Low_complexity 1 29 0 2327 82 0 0 chr9 58246223 58246514 -59616113 + AluY SINE Alu 1 291 -20 339 267 44 0 chr9 58247555 58247645 -59614982 - MIR SINE MIR -132 130 37 180 208 111 56 chr9 58248225 58248297 -59614330 - L3 LINE CR1 -963 614 539 193 268 82 62 chr9 58249321 58249418 -59613209 - L2 LINE L2 -232 3040 2942 629 386 54 86 chr9 58249855 58250425 -59612202 - MLT1H1 LTR MaLR -3 552 1 2205 110 0 3 chr9 58250752 58251052 -59611575 + AluSq SINE Alu 1 299 -14 1679 178 0 38 chr9 58251054 58251383 -59611244 + AluJo SINE Alu 1 318 0 216 0 0 0 chr9 58251716 58251740 -59610887 + (A)n Simple_repeat Simple_repeat 1 24 0 23 0 0 0 chr9 58252550 58252573 -59610054 + AT_rich Low_complexity Low_complexity 1 23 0 975 288 38 23 chr9 58252825 58253224 -59609403 - MLT1I LTR MaLR -4 405 1 1420 220 3 18 chr9 58253700 58253986 -59608641 - AluJo SINE Alu -20 292 11 318 295 0 38 chr9 58254057 58254162 -59608465 - MIR SINE MIR -77 185 85 1833 186 87 32 chr9 58254458 58254932 -59607695 + MLT1D LTR MaLR 6 505 0 213 295 167 40 chr9 58256605 58256832 -59605795 - L2 LINE L2 -189 3083 2828 748 299 92 31 chr9 58257058 58257502 -59605125 - LTR33A LTR ERVL -46 477 7 924 340 36 45 chr9 58258029 58258917 -59603710 - ERVL LTR ERVL -4063 1701 822 927 254 129 77 chr9 58259571 58260068 -59602559 - LTR33A LTR ERVL 0 523 1 272 27 27 0 chr9 58260687 58260724 -59601903 + (TA)n Simple_repeat Simple_repeat 1 38 0 420 185 25 0 chr9 58260963 58261044 -59601583 + AluS SINE Alu 1 83 -230 309 346 117 17 chr9 58261155 58261386 -59601241 + L1MEc LINE L1 1422 1675 -4721 563 276 58 68 chr9 58261571 58261990 -59600637 + L1MEc LINE L1 2909 3337 -2878 346 330 38 0 chr9 58262303 58262409 -59600218 + L2 LINE L2 3203 3312 -1 2331 106 0 0 chr9 58263460 58263761 -59598866 + AluSx SINE Alu 1 301 -11 386 356 41 16 chr9 58265013 58265207 -59597420 - MIR3 SINE MIR -8 200 2 221 345 0 0 chr9 58265415 58265501 -59597126 - MIR SINE MIR -64 144 65 327 305 26 66 chr9 58265523 58265674 -59596953 + HAL1 LINE L1 1776 1920 -587 324 103 0 17 chr9 58265715 58265773 -59596854 - L1MA9 LINE L1 -2 6310 6254 2206 112 0 0 chr9 58266200 58266487 -59596140 + AluSg1 SINE Alu 1 287 -22 229 338 28 0 chr9 58267156 58267227 -59595400 + L2 LINE L2 3191 3263 -9 198 103 0 0 chr9 58268248 58268277 -59594350 + (A)n Simple_repeat Simple_repeat 1 29 0 180 0 0 0 chr9 58268720 58268740 -59593887 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 684 259 10 20 chr9 58268954 58269155 -59593472 - AluJo SINE Alu -6 306 108 190 310 69 0 chr9 58269865 58269952 -59592675 + L3 LINE CR1 1358 1450 -127 268 375 21 0 chr9 58271215 58271311 -59591316 - L2 LINE L2 -3 3269 3172 2197 125 0 0 chr9 58271442 58271738 -59590889 + AluSq SINE Alu 1 296 -17 256 271 102 28 chr9 58272053 58272230 -59590397 - MER34 LTR ERV1 0 542 353 389 159 19 0 chr9 58272490 58272581 -59590046 - MER34C LTR ERV1 -449 100 1 490 314 17 23 chr9 58272742 58272914 -59589713 - MER5B DNA MER1_type -2 176 6 1708 187 114 34 chr9 58274651 58275117 -59587510 - MLT1D LTR MaLR 0 505 3 21 36 0 0 chr9 58275436 58275464 -59587163 + AT_rich Low_complexity Low_complexity 1 28 0 242 231 13 26 chr9 58275590 58275668 -59586959 + CT-rich Low_complexity Low_complexity 1 77 0 39 0 0 0 chr9 58276065 58276104 -59586523 + AT_rich Low_complexity Low_complexity 1 39 0 238 227 27 107 chr9 58276299 58276374 -59586253 + L2 LINE L2 3203 3271 -1 210 237 21 93 chr9 58277644 58277741 -59584886 - MIR SINE MIR -6 256 167 2152 113 3 13 chr9 58277762 58278064 -59584563 - AluSx SINE Alu -13 299 1 2291 84 3 0 chr9 58278477 58278762 -59583865 + AluY SINE Alu 1 286 -25 1714 155 19 47 chr9 58279102 58279419 -59583208 - AluSx SINE Alu -4 308 1 1972 133 3 16 chr9 58280069 58280377 -59582250 + AluSx SINE Alu 1 304 -8 944 261 11 42 chr9 58280496 58280760 -59581867 + MIR SINE MIR 7 262 0 30425 120 12 38 chr9 58281952 58288268 -59574359 + L1PA7 LINE L1 14 6154 0 196 254 63 0 chr9 58288292 58288355 -59574272 + L2 LINE L2 3243 3309 -4 211 190 35 0 chr9 58288971 58289029 -59573598 + (TA)n Simple_repeat Simple_repeat 1 60 0 293 265 107 39 chr9 58289073 58289220 -59573407 - Charlie7 DNA MER1_type -1988 624 488 459 0 0 0 chr9 58289220 58289271 -59573356 + (TG)n Simple_repeat Simple_repeat 2 52 0 2322 50 0 0 chr9 58289278 58289558 -59573069 - L1PA7 LINE L1 -19 6135 5856 293 265 107 39 chr9 58289558 58289636 -59572991 - Charlie7 DNA MER1_type -2129 483 375 693 251 68 14 chr9 58289683 58289902 -59572725 - Charlie7 DNA MER1_type -2351 261 31 297 0 0 0 chr9 58291043 58291076 -59571551 + (TG)n Simple_repeat Simple_repeat 1 33 0 3407 201 56 8 chr9 58291572 58292837 -59569790 - L1ME1 LINE L1 -8 6158 4830 181 289 53 0 chr9 58293729 58293805 -59568822 - MIR SINE MIR -43 219 140 1690 62 5 0 chr9 58294287 58294496 -59568131 + AluY SINE Alu 102 311 0 270 265 0 0 chr9 58294689 58294757 -59567870 - MIR SINE MIR -114 148 81 3836 187 29 52 chr9 58295815 58297034 -59565593 - L1MB7 LINE L1 -12 6172 4994 180 0 0 0 chr9 58297034 58297054 -59565573 + (TG)n Simple_repeat Simple_repeat 1 20 0 3836 187 29 52 chr9 58297054 58297686 -59564941 - L1MB7 LINE L1 -1190 4994 4349 486 248 35 0 chr9 58298079 58298192 -59564435 - L2 LINE L2 0 3313 3197 21 0 0 0 chr9 58298351 58298372 -59564255 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr9 58298786 58298813 -59563814 + AT_rich Low_complexity Low_complexity 1 27 0 205 366 61 0 chr9 58298813 58298895 -59563732 + MIR SINE MIR 65 151 -111 342 252 72 0 chr9 58299176 58299287 -59563340 - MLT1I LTR MaLR 0 409 291 266 298 43 0 chr9 58299351 58299445 -59563182 - MLT1I LTR MaLR -201 208 111 288 292 31 67 chr9 58299843 58300038 -59562589 + L2 LINE L2 2716 2903 -411 316 286 51 10 chr9 58300318 58300416 -59562211 + L2 LINE L2 3180 3281 -32 286 366 25 25 chr9 58300655 58300816 -59561811 + MIR SINE MIR 32 192 -70 1581 175 50 41 chr9 58301450 58302010 -59560617 - L1ME1 LINE L1 -4 6162 5425 2176 131 0 3 chr9 58302010 58302315 -59560312 - AluSq SINE Alu -9 304 1 1581 175 50 41 chr9 58302315 58302426 -59560201 - L1ME1 LINE L1 -741 5425 5317 1740 182 0 7 chr9 58302687 58303008 -59559619 - AluJb SINE Alu 0 319 1 22 35 0 0 chr9 58303252 58303281 -59559346 + AT_rich Low_complexity Low_complexity 1 29 0 204 262 36 60 chr9 58403352 58403373 -59459254 + L2 LINE L2 3202 3222 -91 1675 266 37 2 chr9 58403373 58403806 -59458821 - LTR16A LTR ERVL 0 450 3 204 262 36 60 chr9 58403806 58403868 -59458759 + L2 LINE L2 3222 3283 -30 924 223 49 92 chr9 58403869 58404215 -59458412 + MER102b DNA MER1_type 11 341 0 535 281 13 7 chr9 58404286 58404439 -59458188 - MIR SINE MIR -56 206 53 27 0 0 0 chr9 58404439 58404466 -59458161 + AT_rich Low_complexity Low_complexity 1 27 0 281 102 41 0 chr9 58405081 58405130 -59457497 + CT-rich Low_complexity Low_complexity 3 53 0 934 99 8 0 chr9 58405132 58405263 -59457364 - AluY SINE Alu -7 304 173 252 0 0 0 chr9 58405263 58405291 -59457336 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1817 147 7 20 chr9 58405296 58405588 -59457039 - AluJo SINE Alu -5 307 20 1507 112 86 0 chr9 58405688 58405956 -59456671 - L1MA4 LINE L1 -7 6293 6003 1821 134 39 11 chr9 58405973 58406256 -59456371 - AluJb SINE Alu -19 293 3 180 234 0 0 chr9 58406616 58406663 -59455964 + (CCTA)n Simple_repeat Simple_repeat 1 47 0 1299 204 86 64 chr9 58406683 58407056 -59455571 + MLT1B LTR MaLR 3 383 -7 2071 132 4 0 chr9 58407234 58407515 -59455112 - AluSx SINE Alu -30 282 1 2282 112 0 0 chr9 58407580 58407883 -59454744 + AluSg SINE Alu 1 303 -7 336 303 10 0 chr9 58407909 58408008 -59454619 - L2 LINE L2 -673 2641 2542 1963 247 55 27 chr9 58408008 58408639 -59453988 + L1MD2 LINE L1 4658 5306 -840 2198 122 10 0 chr9 58408646 58408950 -59453677 + AluSx SINE Alu 5 311 -1 345 208 0 0 chr9 58408953 58409030 -59453597 + A-rich Low_complexity Low_complexity 4 80 0 2790 240 17 42 chr9 58409035 58409068 -59453559 + L1MD2 LINE L1 5339 5371 -988 1828 171 49 30 chr9 58409068 58409436 -59453191 - THE1C LTR MaLR 0 375 1 2790 240 17 42 chr9 58409436 58409827 -59452800 + L1MD2 LINE L1 5371 5736 -623 2144 124 3 10 chr9 58409827 58410134 -59452493 - AluSp SINE Alu -8 305 1 2790 240 17 42 chr9 58410134 58410490 -59452137 + L1MD2 LINE L1 5736 6100 -259 797 160 0 8 chr9 58410493 58410624 -59452003 - LTR24C LTR ERV1 0 635 506 1822 80 4 0 chr9 58410630 58410855 -59451772 + AluSg SINE Alu 1 226 -84 1656 159 7 19 chr9 58410955 58411225 -59451402 - AluJb SINE Alu -44 268 2 189 132 0 0 chr9 58411659 58411697 -59450930 + (CAAA)n Simple_repeat Simple_repeat 1 38 0 2402 80 17 0 chr9 58411739 58412041 -59450586 - AluSp SINE Alu -6 307 1 427 237 45 96 chr9 58412136 58412164 -59450463 - MIR SINE MIR -66 196 168 1751 174 17 3 chr9 58412164 58412458 -59450169 - AluJo SINE Alu -14 298 1 427 237 45 96 chr9 58412458 58412606 -59450021 - MIR SINE MIR -94 168 29 2359 107 3 0 chr9 58412818 58413128 -59449499 - AluSp SINE Alu 0 313 3 2403 102 0 3 chr9 58413598 58413912 -59448715 + AluSq SINE Alu 1 313 0 2084 101 3 77 chr9 58414766 58415103 -59447524 + AluSx SINE Alu 1 312 0 314 136 85 0 chr9 58415285 58415344 -59447283 + L1MA8 LINE L1 6209 6272 -19 2043 137 0 7 chr9 58415356 58415655 -59446972 - AluSx SINE Alu -15 297 1 1745 144 36 52 chr9 58415916 58416221 -59446406 + AluJo SINE Alu 2 301 -11 899 145 19 31 chr9 58416551 58416710 -59445917 - MLT1F1 LTR MaLR 0 567 411 423 115 161 23 chr9 58416801 58416888 -59445739 - MER5A DNA MER1_type -88 101 3 2276 81 0 3 chr9 58421299 58421582 -59441045 - AluY SINE Alu -17 294 13 22 0 0 0 chr9 58421876 58421898 -59440729 + AT_rich Low_complexity Low_complexity 1 22 0 388 196 2 0 chr9 58423740 58423814 -59438813 - AluSg/x SINE Alu -117 183 123 23 0 0 0 chr9 58424188 58424211 -59438416 + AT_rich Low_complexity Low_complexity 1 23 0 2771 13 3 10 chr9 58424211 58424524 -59438103 - AluYa5 SINE Alu 0 311 1 2150 136 0 0 chr9 58424819 58425114 -59437513 + AluSx SINE Alu 1 295 -17 185 32 0 65 chr9 58426602 58426633 -59435994 + (CAGAGA)n Simple_repeat Simple_repeat 2 30 0 197 59 59 0 chr9 58426654 58426688 -59435939 + GA-rich Low_complexity Low_complexity 2 37 0 209 264 77 11 chr9 58427377 58427468 -59435159 - MIR SINE MIR -77 185 89 1641 168 43 51 chr9 58428287 58428606 -59434021 + MLT1B LTR MaLR 1 321 -69 1963 127 6 35 chr9 58428606 58428922 -59433705 - AluSx SINE Alu -5 307 1 2303 91 16 13 chr9 58428924 58429233 -59433394 - AluSx SINE Alu -2 310 1 1641 168 43 51 chr9 58429233 58429303 -59433324 + MLT1B LTR MaLR 322 390 0 565 218 114 50 chr9 58429647 58429867 -59432760 - MIR SINE MIR 0 262 29 2419 86 0 3 chr9 58429871 58430174 -59432453 - AluSc SINE Alu -7 302 1 220 231 0 19 chr9 58430211 58430263 -59432364 + GA-rich Low_complexity Low_complexity 2 52 0 191 259 69 0 chr9 58430263 58430321 -59432306 + MIR SINE MIR 74 135 -127 2427 79 0 10 chr9 58430676 58430981 -59431646 + AluSc SINE Alu 1 302 -7 237 83 0 0 chr9 58432156 58432192 -59430435 + (TG)n Simple_repeat Simple_repeat 1 36 0 203 277 177 23 chr9 58432302 58432432 -59430195 - MIR3 SINE MIR -55 153 4 2194 125 3 0 chr9 58432548 58432859 -59429768 + AluSx SINE Alu 1 312 0 210 296 37 12 chr9 58432983 58433064 -59429563 + L3 LINE CR1 300 382 -1195 2045 135 4 0 chr9 58433738 58434019 -59428608 + AluSq SINE Alu 1 282 -31 180 0 0 0 chr9 58434022 58434042 -59428585 + (CAA)n Simple_repeat Simple_repeat 2 21 0 260 271 47 39 chr9 58434079 58434208 -59428419 - L1ME LINE L1 -317 5804 5675 1075 67 0 22 chr9 58434280 58434414 -59428213 + AluSg SINE Alu 1 131 -179 2045 166 0 0 chr9 58434422 58434730 -59427897 + AluSx SINE Alu 5 312 0 343 284 100 50 chr9 58434805 58434899 -59427728 - L1ME LINE L1 -2177 3969 3881 2360 82 3 0 chr9 58434899 58435192 -59427435 - AluSg SINE Alu -16 294 1 343 284 100 50 chr9 58435192 58435396 -59427231 - L1ME LINE L1 -2265 3881 3656 2301 95 0 13 chr9 58435578 58435882 -59426745 - AluSq SINE Alu -13 300 1 262 298 106 60 chr9 58435911 58436220 -59426407 - L1ME LINE L1 -2573 3573 3280 1645 192 7 7 chr9 58436220 58436528 -59426099 - AluJb SINE Alu 0 312 5 262 298 106 60 chr9 58436528 58436805 -59425822 - L1ME LINE L1 -2866 3280 2960 21 0 0 0 chr9 58436818 58436839 -59425788 + AT_rich Low_complexity Low_complexity 1 21 0 230 156 0 0 chr9 58436848 58436893 -59425734 + T-rich Low_complexity Low_complexity 1 45 0 576 271 164 0 chr9 58437245 58437452 -59425175 - MIR SINE MIR -7 255 15 279 310 0 0 chr9 58437509 58437580 -59425047 + CT-rich Low_complexity Low_complexity 3 73 0 530 253 70 38 chr9 58438442 58438628 -59423999 + MIR SINE MIR 71 262 0 560 223 103 17 chr9 58438717 58438892 -59423735 - L2 LINE L2 -2 3311 3122 2004 131 7 10 chr9 58439174 58439465 -59423162 + AluSx SINE Alu 1 290 -22 1665 113 5 0 chr9 58439579 58439800 -59422827 - AluSx SINE Alu -90 222 1 335 296 44 0 chr9 58439878 58440013 -59422614 - L2 LINE L2 -608 2706 2566 210 333 88 0 chr9 58440917 58441031 -59421596 + L2 LINE L2 3147 3270 -2 2318 116 3 0 chr9 58441059 58441370 -59421257 - AluSx SINE Alu 0 312 1 180 0 0 0 chr9 58441403 58441423 -59421204 + (GTGTG)n Simple_repeat Simple_repeat 3 22 0 2124 116 14 3 chr9 58441433 58441725 -59420902 - AluSq SINE Alu -18 295 1 555 182 88 115 chr9 58442276 58442350 -59420277 + MER5A DNA MER1_type 2 76 -113 2112 123 0 7 chr9 58442350 58442661 -59419966 + AluSx SINE Alu 1 309 0 555 182 88 115 chr9 58442661 58442777 -59419850 + MER5A DNA MER1_type 76 188 -1 291 302 28 50 chr9 58443036 58443218 -59419409 - HAL1 LINE L1 -7 2500 2323 7177 125 24 44 chr9 58443662 58444918 -59417709 - Tigger3b DNA MER2_type 0 1231 1 2359 90 0 0 chr9 58445147 58445446 -59417181 - AluY SINE Alu -12 299 1 1558 117 0 0 chr9 58445448 58445661 -59416966 - AluSq SINE Alu -4 309 97 981 104 0 0 chr9 58445761 58445895 -59416732 + AluSg/x SINE Alu 177 310 0 21 0 0 0 chr9 58446250 58446271 -59416356 + AT_rich Low_complexity Low_complexity 1 21 0 610 271 48 75 chr9 58446822 58446940 -59415687 - L2 LINE L2 -2 3311 3191 2422 101 0 0 chr9 58446940 58447247 -59415380 - AluSc SINE Alu -2 307 1 610 271 48 75 chr9 58447247 58447460 -59415167 - L2 LINE L2 -122 3191 2989 2495 64 0 0 chr9 58448729 58449027 -59413600 + AluSg SINE Alu 1 298 -12 1420 153 112 59 chr9 58449389 58449864 -59412763 - MER1B DNA MER1_type 0 339 4 2169 128 0 10 chr9 58450122 58450435 -59412192 - AluSx SINE Alu -2 310 1 2855 9 0 16 chr9 58451053 58451369 -59411258 - AluYa5 SINE Alu 0 311 1 2229 108 0 3 chr9 58451527 58451824 -59410803 - AluSg SINE Alu -14 296 1 1856 110 13 62 chr9 58452048 58452356 -59410271 + AluSx SINE Alu 1 293 -19 2950 6 0 0 chr9 58452732 58453043 -59409584 - AluYb8 SINE Alu -7 311 1 1963 129 13 33 chr9 58453043 58453346 -59409281 - AluSg SINE Alu -13 297 1 1968 97 56 0 chr9 58453417 58453685 -59408942 - AluSp SINE Alu -20 293 11 261 0 0 0 chr9 58454516 58454545 -59408082 + (TG)n Simple_repeat Simple_repeat 2 30 0 2933 122 7 9 chr9 58454576 58455027 -59407600 - L1PB1 LINE L1 0 6151 5702 1557 113 0 25 chr9 58455159 58455399 -59407228 - AluSg/x SINE Alu -7 303 70 360 0 0 0 chr9 58455760 58455800 -59406827 + (TG)n Simple_repeat Simple_repeat 2 41 0 1930 132 3 65 chr9 58456177 58456502 -59406125 - AluJo SINE Alu -7 305 1 292 335 93 20 chr9 58456762 58457013 -59405614 + L2 LINE L2 2739 3005 -267 22 0 0 0 chr9 58457101 58457123 -59405504 + AT_rich Low_complexity Low_complexity 1 22 0 2582 71 0 3 chr9 58457282 58457593 -59405034 - AluY SINE Alu -1 310 1 3315 105 10 22 chr9 58457595 58458092 -59404535 - L1PB2 LINE L1 -2 6149 5659 192 371 182 0 chr9 58458154 58458286 -59404341 - L2 LINE L2 -5 3267 3112 5939 144 12 14 chr9 58458397 58458785 -59403842 - L1PA16 LINE L1 0 6166 5779 2201 107 10 0 chr9 58458785 58459074 -59403553 - AluSg SINE Alu -2 308 17 5939 144 12 14 chr9 58459074 58459294 -59403333 - L1PA16 LINE L1 -387 5779 5560 588 89 0 0 chr9 58459294 58459373 -59403254 + MADE1 DNA Mariner 1 79 -1 5939 144 12 14 chr9 58459373 58460021 -59402606 - L1PA16 LINE L1 -606 5560 4919 205 366 60 8 chr9 58460464 58460598 -59402029 + MER5A DNA MER1_type 43 183 -6 658 120 10 0 chr9 58460847 58460947 -59401680 + AluJ/FLAM SINE Alu 1 101 -211 2002 114 18 0 chr9 58461777 58462089 -59400538 - AluSg1 SINE Alu 0 317 1 2324 111 0 0 chr9 58462218 58462516 -59400111 - AluSc SINE Alu -11 298 1 313 200 111 52 chr9 58463042 58463205 -59399422 + L1 LINE L1 4781 4955 -1191 353 315 94 0 chr9 58463274 58463401 -59399226 + MER5A DNA MER1_type 1 139 -50 2248 78 60 0 chr9 58463421 58463705 -59398922 - AluY SINE Alu -10 301 1 2101 118 0 0 chr9 58463761 58464064 -59398563 - AluSx SINE Alu 0 307 5 408 284 119 0 chr9 58464103 58464279 -59398348 + MIR SINE MIR 56 252 -10 296 345 73 0 chr9 58464646 58464756 -59397871 - L2 LINE L2 -4 3268 3151 2258 117 0 0 chr9 58464795 58465094 -59397533 - AluSg SINE Alu -11 299 1 352 244 12 0 chr9 58465263 58465345 -59397282 - HAL1 LINE L1 -932 1575 1493 1795 178 86 43 chr9 58465576 58465643 -59396984 - MLT1C LTR MaLR 0 467 404 2599 53 0 0 chr9 58465643 58465942 -59396685 + AluY SINE Alu 1 299 -12 1795 178 86 43 chr9 58465942 58466317 -59396310 - MLT1C LTR MaLR -63 404 6 752 200 142 0 chr9 58466490 58466680 -59395947 - ORSL DNA AcHobo 0 275 59 2222 104 10 0 chr9 58466750 58467048 -59395579 - AluSq SINE Alu -12 301 1 2049 120 0 10 chr9 58467059 58467359 -59395268 - AluY SINE Alu -14 297 1 428 146 0 37 chr9 58467368 58467450 -59395177 - ORSL DNA AcHobo -192 83 5 664 238 201 16 chr9 58467533 58467777 -59394850 + LTR16A1 LTR ERVL 168 456 -1 2339 104 7 0 chr9 58467935 58468234 -59394393 + AluSx SINE Alu 1 301 -11 377 323 12 25 chr9 58469205 58469366 -59393261 + MIR SINE MIR 48 206 -56 552 226 133 62 chr9 58469750 58469976 -59392651 - MLT1K LTR MaLR -12 576 335 431 139 127 0 chr9 58470090 58470169 -59392458 - 5S rRNA rRNA -31 90 2 2429 63 0 0 chr9 58470402 58470689 -59391938 + AluY SINE Alu 1 287 -24 2388 101 0 0 chr9 58470770 58471076 -59391551 + AluSg SINE Alu 1 306 -4 2103 119 0 7 chr9 58471939 58472264 -59390363 + AluSx SINE Alu 1 323 0 2269 82 0 0 chr9 58472380 58472696 -59389931 + AluY SINE Alu 1 316 0 386 197 57 74 chr9 58472858 58472980 -59389647 - LTR33 LTR ERVL 0 521 402 1662 168 3 34 chr9 58473230 58473527 -59389100 + AluJo SINE Alu 5 292 -20 1112 61 0 0 chr9 58473814 58473946 -59388681 + AluSq/x SINE Alu 1 132 -181 2495 74 0 3 chr9 58473949 58474260 -59388367 + AluY SINE Alu 1 310 -1 257 345 7 28 chr9 58474367 58474512 -59388115 - L2 LINE L2 -652 2662 2521 223 305 0 37 chr9 58474574 58474656 -59387971 + CT-rich Low_complexity Low_complexity 2 80 0 2288 64 0 30 chr9 58474810 58475105 -59387522 - AluY SINE Alu -9 302 17 936 243 67 71 chr9 58475423 58475866 -59386761 + MLT1G3 LTR MaLR 14 496 -71 2374 93 0 6 chr9 58475866 58476178 -59386449 + AluY SINE Alu 1 310 -1 936 243 67 71 chr9 58476178 58476250 -59386377 + MLT1G3 LTR MaLR 496 567 0 30 0 0 0 chr9 58476341 58476371 -59386256 + AT_rich Low_complexity Low_complexity 1 30 0 2217 85 39 0 chr9 58476695 58476976 -59385651 + AluSq SINE Alu 6 297 -16 2295 105 10 0 chr9 58477792 58478096 -59384531 + AluSg SINE Alu 1 307 -3 336 289 0 67 chr9 58478155 58478230 -59384397 - MIR3 SINE MIR -1 207 143 1961 171 64 9 chr9 58478230 58478576 -59384051 + MLT1A1 LTR MaLR 1 365 0 336 289 0 67 chr9 58478576 58478635 -59383992 - MIR3 SINE MIR -65 143 82 33 0 0 0 chr9 58479744 58479777 -59382850 + AT_rich Low_complexity Low_complexity 1 33 0 866 145 8 0 chr9 58480024 58480155 -59382472 + FLAM_C SINE Alu 2 133 0 304 216 10 49 chr9 58480198 58480300 -59382327 + L1MC5 LINE L1 7832 7929 -32 1987 129 6 16 chr9 58480936 58481072 -59381555 - AluSx SINE Alu 0 420 284 1165 96 11 0 chr9 58481072 58481250 -59381377 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1987 129 6 16 chr9 58481250 58481536 -59381091 - AluSx SINE Alu -136 284 1 2574 4 0 0 chr9 58481600 58481873 -59380754 - AluYa5 SINE Alu -3 308 36 2064 114 35 0 chr9 58482195 58482484 -59380143 + AluSq SINE Alu 1 299 -14 44 35 0 0 chr9 58483007 58483065 -59379562 + AT_rich Low_complexity Low_complexity 1 58 0 2423 75 3 7 chr9 58483826 58484131 -59378496 + AluSq SINE Alu 1 304 -9 29 60 0 0 chr9 58484215 58484265 -59378362 + AT_rich Low_complexity Low_complexity 1 50 0 195 42 0 0 chr9 58484301 58484325 -59378302 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 499 355 16 39 chr9 58484326 58484706 -59377921 + L1ME4a LINE L1 4690 5074 -1072 462 324 80 51 chr9 58484764 58484881 -59377746 + L1ME4a LINE L1 5628 5740 -381 2372 124 39 33 chr9 58484881 58485243 -59377384 - THE1B LTR MaLR 0 364 1 462 324 80 51 chr9 58485243 58485477 -59377150 + L1ME4a LINE L1 5740 5989 -132 2372 89 0 0 chr9 58485632 58485936 -59376691 + AluY SINE Alu 1 304 -7 203 384 112 0 chr9 58485939 58486064 -59376563 - L2 LINE L2 -674 2640 2502 817 284 66 85 chr9 58486483 58487055 -59375572 + L2 LINE L2 2720 3305 -8 462 326 79 55 chr9 58487245 58487333 -59375294 - L2 LINE L2 0 3272 3188 2104 117 0 0 chr9 58487333 58487646 -59374981 + AluSx SINE Alu 2 314 0 462 326 79 55 chr9 58487646 58488010 -59374617 - L2 LINE L2 -84 3188 2808 196 367 172 23 chr9 58488061 58488543 -59374084 - L2 LINE L2 -414 2900 2347 222 37 0 0 chr9 58488637 58488664 -59373963 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 2160 101 4 0 chr9 58488671 58488949 -59373678 - AluSp SINE Alu -33 280 2 1397 298 57 2 chr9 58489110 58489530 -59373097 - LTR16A LTR ERVL 0 450 8 1882 174 3 7 chr9 58489552 58489857 -59372770 - AluSx SINE Alu -8 304 1 232 137 0 0 chr9 58490327 58490378 -59372249 + L1MC4 LINE L1 6653 6703 -1339 297 0 0 0 chr9 58492499 58492532 -59370095 + (TTCA)n Simple_repeat Simple_repeat 3 35 0 299 274 14 0 chr9 58494032 58494105 -59368522 - LTR45 LTR ERV1 -60 465 392 21 0 0 0 chr9 58494544 58494565 -59368062 + AT_rich Low_complexity Low_complexity 1 21 0 2389 126 26 3 chr9 58494696 58495086 -59367541 - LTR56 LTR ERV1 0 445 47 2823 156 171 10 chr9 58495427 58496005 -59366622 + LTR51 LTR ERV1 1 671 0 3091 106 24 2 chr9 58496392 58496817 -59365810 + MER57B LTR ERV1 1 434 0 357 239 23 11 chr9 58497745 58497833 -59364794 - MIR SINE MIR -111 151 63 2461 81 0 0 chr9 58497892 58498202 -59364425 - AluY SINE Alu 0 311 2 301 77 0 0 chr9 58498958 58498997 -59363630 + AluS SINE Alu 28 66 -237 4720 205 57 19 chr9 58499011 58500632 -59361995 + L1MD1 LINE L1 4243 5818 -424 581 61 12 0 chr9 58500632 58500714 -59361913 + (TA)n Simple_repeat Simple_repeat 2 84 0 4720 205 57 19 chr9 58500714 58501156 -59361471 + L1MD1 LINE L1 5818 6242 0 2304 226 100 10 chr9 58501512 58502091 -59360536 + L1MC4 LINE L1 6458 7088 -954 5196 123 36 2 chr9 58502758 58503572 -59359055 + L1PA16 LINE L1 5317 6157 -9 421 206 0 0 chr9 58503847 58503920 -59358707 - Tigger5 DNA MER2_type 0 2323 2251 241 170 57 19 chr9 58503889 58503942 -59358685 - Tigger5 DNA MER2_type -2268 55 1 * 2502 64 0 13 chr9 58503955 58504268 -59358359 - AluY SINE Alu -2 309 1 2443 67 0 10 chr9 58505227 58505539 -59357088 + AluY SINE Alu 3 311 0 292 233 165 10 chr9 58506307 58506410 -59356217 + L2 LINE L2 3195 3313 0 636 299 111 38 chr9 58507093 58507544 -59355083 + MLT1K LTR MaLR 13 496 -92 2120 223 60 28 chr9 58507860 58508433 -59354194 + MLT1E LTR MaLR 1 593 0 2307 90 3 0 chr9 58509450 58509740 -59352887 + AluSx SINE Alu 1 291 -21 189 0 0 0 chr9 58509744 58509765 -59352862 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 2167 123 66 11 chr9 58509767 58510223 -59352404 - LTR24C LTR ERV1 -128 507 1 266 219 31 0 chr9 58510228 58510292 -59352335 + L1ME1 LINE L1 6084 6149 -17 2080 108 3 7 chr9 58510749 58511037 -59351590 - AluSp SINE Alu -24 289 3 2314 85 0 28 chr9 58511057 58511376 -59351251 - AluY SINE Alu -1 310 1 2167 105 0 7 chr9 58511803 58512107 -59350520 + AluY SINE Alu 3 304 -7 1403 201 0 111 chr9 58512323 58512656 -59349971 - AluJo SINE Alu -6 296 1 2151 162 15 25 chr9 58512907 58513301 -59349326 - MLT1B LTR MaLR 0 390 1 788 179 0 76 chr9 58514095 58514240 -59348387 - FLAM_A SINE Alu -8 134 1 231 36 0 0 chr9 58514796 58514824 -59347803 + (TG)n Simple_repeat Simple_repeat 2 29 0 185 321 49 0 chr9 58515819 58515900 -59346727 - L2 LINE L2 0 3272 3188 309 228 246 0 chr9 58516214 58516328 -59346299 - MIR SINE MIR 0 262 121 2251 104 0 3 chr9 58516328 58516636 -59345991 + AluSx SINE Alu 1 307 -5 1265 193 25 56 chr9 58516651 58516973 -59345654 + MLT1D LTR MaLR 1 312 -193 207 100 0 0 chr9 58517032 58517062 -59345565 + (TCCC)n Simple_repeat Simple_repeat 3 32 0 1967 142 16 7 chr9 58517062 58517556 -59345071 - AluSx SINE Alu 0 497 1 192 40 0 0 chr9 58517602 58517627 -59345000 + (TTA)n Simple_repeat Simple_repeat 2 26 0 386 290 112 0 chr9 58517631 58517738 -59344889 + L2 LINE L2 3140 3258 -14 2671 130 23 5 chr9 58522466 58522896 -59339731 - LTR56 LTR ERV1 -2 443 6 6465 171 67 43 chr9 58523119 58523785 -59338842 + MER57B-int LTR ERV1 1753 2401 -5036 2252 112 0 3 chr9 58523785 58524089 -59338538 + AluY SINE Alu 1 303 -8 6465 171 67 43 chr9 58524089 58525463 -59337164 + MER57B-int LTR ERV1 2401 5205 -2232 12479 103 108 59 chr9 58525469 58527592 -59335035 + MER57B-int LTR ERV1 5310 7537 0 3076 126 9 2 chr9 58527594 58528023 -59334604 + MER57B LTR ERV1 3 434 0 2690 111 22 5 chr9 58528023 58528436 -59334191 - LTR56 LTR ERV1 -17 428 9 2756 167 172 7 chr9 58528745 58529321 -59333306 + LTR51 LTR ERV1 1 671 0 245 328 39 64 chr9 58529495 58529699 -59332928 - L3b LINE CR1 -283 1300 1102 338 261 11 11 chr9 58530641 58530729 -59331898 - MIR SINE MIR -111 151 64 1679 84 9 0 chr9 58531509 58531735 -59330892 - AluY SINE Alu -83 228 1 279 240 140 30 chr9 58531742 58531842 -59330785 + MER5C DNA MER1_type 208 318 -6 307 148 457 0 chr9 58531940 58532021 -59330606 + MLT2B1 LTR ERVL 224 341 -179 359 102 0 0 chr9 58532027 58532076 -59330551 + MLT2B1 LTR ERVL 472 520 0 23 0 0 0 chr9 58532692 58532715 -59329912 + AT_rich Low_complexity Low_complexity 1 23 0 234 122 11 200 chr9 58532856 58532946 -59329681 - MIR3 SINE MIR -28 180 108 204 216 0 0 chr9 58532973 58533010 -59329617 + (TG)n Simple_repeat Simple_repeat 2 38 0 301 311 96 36 chr9 58533353 58533520 -59329107 + MER117 DNA MER1_type 21 197 0 402 146 0 0 chr9 58534055 58534110 -59328517 + Alu SINE Alu 1 55 -255 225 154 0 0 chr9 58534428 58534467 -59328160 + GA-rich Low_complexity Low_complexity 4 42 0 252 225 56 28 chr9 58534588 58534659 -59327968 + MER117 DNA MER1_type 124 196 -1 525 297 82 9 chr9 58534765 58534803 -59327824 + MIR SINE MIR 2 36 -226 186 71 0 0 chr9 58534803 58534831 -59327796 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 525 297 82 9 chr9 58534831 58535024 -59327603 + MIR SINE MIR 36 250 -12 2209 116 0 0 chr9 58535051 58535362 -59327265 + AluSx SINE Alu 1 311 0 364 176 72 13 chr9 58535362 58535515 -59327112 + (TA)n Simple_repeat Simple_repeat 2 163 0 305 315 0 9 chr9 58535790 58535901 -59326726 - LTR67 LTR ERVL 0 557 448 2320 100 0 3 chr9 58536152 58536461 -59326166 - AluSp SINE Alu -5 308 1 2137 102 4 0 chr9 58536811 58537118 -59325509 + AluY SINE Alu 6 313 0 2306 75 0 3 chr9 58537672 58537964 -59324663 + AluY SINE Alu 2 292 -19 297 0 0 0 chr9 58537965 58537998 -59324629 + (CA)n Simple_repeat Simple_repeat 2 34 0 617 344 68 10 chr9 58538419 58538803 -59323824 + L2 LINE L2 1647 2052 -1262 200 351 19 54 chr9 58538829 58539034 -59323593 + L2 LINE L2 2311 2508 -806 933 150 0 52 chr9 58539039 58539212 -59323415 - AluJb SINE Alu -11 301 138 189 364 81 0 chr9 58539316 58539415 -59323212 + MIR3 SINE MIR 99 205 -3 2242 114 13 0 chr9 58539835 58540142 -59322485 + AluSq SINE Alu 1 311 -2 2305 99 0 10 chr9 58540775 58541087 -59321540 + AluY SINE Alu 1 309 -2 550 236 93 30 chr9 58541538 58541775 -59320852 + MER112 DNA MER1_type 4 255 -1 2337 93 0 0 chr9 58542878 58543178 -59319449 - AluY SINE Alu -11 300 1 1629 185 34 70 chr9 58543197 58543553 -59319074 - MER7A DNA MER2_type 0 346 6 2382 92 0 0 chr9 58543731 58544025 -59318602 + AluSx SINE Alu 1 294 -18 948 113 0 21 chr9 58544050 58544192 -59318435 + L1PA16 LINE L1 5709 5847 -319 183 150 25 0 chr9 58544368 58544408 -59318219 + L2 LINE L2 3273 3313 0 1611 163 7 4 chr9 58544430 58544706 -59317921 - AluSq SINE Alu -9 304 28 329 235 25 12 chr9 58545495 58545576 -59317051 + MIR SINE MIR 63 144 -118 2702 139 28 7 chr9 58545865 58546290 -59316337 - MER57B LTR ERV1 0 434 1 2804 153 187 5 chr9 58546677 58547245 -59315382 - LTR51 LTR ERV1 0 671 1 2579 137 21 5 chr9 58547464 58547894 -59314733 + LTR56 LTR ERV1 9 445 0 276 225 38 0 chr9 58548478 58548556 -59314071 + LTR45 LTR ERV1 343 463 -62 261 0 0 0 chr9 58550050 58550079 -59312548 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 222 37 0 0 chr9 58550882 58550909 -59311718 + (T)n Simple_repeat Simple_repeat 1 27 0 239 0 0 31 chr9 58557060 58557092 -59305535 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 207 240 80 70 chr9 58557282 58557382 -59305245 + L2 LINE L2 693 793 -2521 1707 173 0 3 chr9 58557429 58557718 -59304909 - AluSx SINE Alu -24 288 1 248 218 0 0 chr9 58557835 58557890 -59304737 + L1MB7 LINE L1 6117 6171 -13 3517 171 76 11 chr9 58558728 58559476 -59303151 + L1MB8 LINE L1 5381 6177 -1 2069 167 143 8 chr9 58559615 58559992 -59302635 - MSTA LTR MaLR 0 428 1 2144 137 38 62 chr9 58560103 58560440 -59302187 - THE1B LTR MaLR 0 364 35 2334 98 0 7 chr9 58560440 58560746 -59301881 + AluY SINE Alu 1 304 -7 2144 137 38 62 chr9 58560746 58560781 -59301846 - THE1B LTR MaLR -329 35 1 8960 95 166 3 chr9 58560781 58562140 -59300487 - THE1B-int LTR MaLR 0 1580 1 2143 138 45 28 chr9 58562142 58562496 -59300131 - THE1B LTR MaLR -2 362 3 21 57 0 0 chr9 58562503 58562538 -59300089 + AT_rich Low_complexity Low_complexity 1 35 0 974 244 73 60 chr9 58562815 58562864 -59299763 - L1MC4 LINE L1 -7 8035 7988 2343 168 62 12 chr9 58562864 58563270 -59299357 - MSTB LTR MaLR 0 426 1 974 244 73 60 chr9 58563270 58563375 -59299252 - L1MC4 LINE L1 -54 7988 7886 363 23 0 0 chr9 58563375 58563419 -59299208 + (CA)n Simple_repeat Simple_repeat 2 45 0 974 244 73 60 chr9 58563419 58563743 -59298884 - L1MC4 LINE L1 -156 7886 7550 2493 241 55 37 chr9 58565456 58566261 -59296366 - L1MCa LINE L1 -3096 3330 2512 2519 51 3 19 chr9 58566262 58566578 -59296049 + AluYa5 SINE Alu 1 311 0 1060 132 0 7 chr9 58566578 58566730 -59295897 + AluSq SINE Alu 126 276 -37 255 61 0 0 chr9 58566735 58566768 -59295859 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 581 239 52 16 chr9 58566768 58567002 -59295625 - L1MCa LINE L1 -3947 2479 2280 494 136 68 0 chr9 58567003 58567091 -59295536 - L1MA9 LINE L1 -37 6275 6182 1778 5 10 0 chr9 58572410 58572606 -59290021 + AluYa5 SINE Alu 109 306 -5 1074 83 0 0 chr9 58573077 58573210 -59289417 + AluSg SINE Alu 1 133 -177 2122 113 0 3 chr9 58573210 58573523 -59289104 + AluSg SINE Alu 1 312 0 572 158 54 9 chr9 58573528 58573676 -59288951 + MIR SINE MIR 38 198 -63 201 216 20 0 chr9 58573825 58573876 -59288751 + MIR SINE MIR 211 262 0 1027 180 33 0 chr9 58574348 58574531 -59288096 - MER5A DNA MER1_type 0 189 1 2302 50 3 7 chr9 58574642 58574924 -59287703 + AluY SINE Alu 31 311 0 2083 99 29 0 chr9 58576082 58576354 -59286273 + AluSx SINE Alu 1 280 -32 526 308 66 18 chr9 58577932 58578159 -59284468 + MIR SINE MIR 25 262 0 1903 168 0 3 chr9 58578207 58578517 -59284110 - AluSx SINE Alu -3 309 1 1279 128 0 10 chr9 58578575 58578771 -59283856 - MLT1B LTR MaLR 0 390 197 427 125 0 0 chr9 58578827 58578891 -59283736 + MSTA LTR MaLR 9 72 -356 215 30 0 30 chr9 58581906 58581939 -59280688 + (CAAAA)n Simple_repeat Simple_repeat 1 32 0 1224 195 9 9 chr9 58582116 58582342 -59280285 - HUERS-P3 LTR ERV1 -8675 244 19 1455 146 5 9 chr9 58582360 58582579 -59280048 - LTR9 LTR ERV1 0 612 395 453 126 23 11 chr9 58582679 58582766 -59279861 + AluY SINE Alu 191 278 -33 188 35 35 0 chr9 58582773 58582802 -59279825 + (TAA)n Simple_repeat Simple_repeat 2 31 0 1330 101 0 0 chr9 58582804 58582982 -59279645 + AluSp SINE Alu 130 307 -6 231 385 87 0 chr9 58583710 58583814 -59278813 + L2 LINE L2 3101 3213 -59 2227 161 76 43 chr9 58584884 58585398 -59277229 - L1MA9 LINE L1 -139 6173 5643 1572 221 123 78 chr9 58585402 58585575 -59277052 - L1MCb LINE L1 -3929 2816 2652 2279 96 3 7 chr9 58585575 58585877 -59276750 - AluSp SINE Alu -12 301 1 1572 221 123 78 chr9 58585877 58586037 -59276590 - L1MCb LINE L1 -4093 2652 2501 2470 57 0 7 chr9 58586037 58586333 -59276294 - AluY SINE Alu -17 294 1 1572 221 123 78 chr9 58586333 58586415 -59276212 - L1MCb LINE L1 -4244 2501 2424 1603 206 0 14 chr9 58586415 58586706 -59275921 - AluJb SINE Alu -25 287 1 1572 221 123 78 chr9 58586706 58587034 -59275593 - L1MCb LINE L1 -4321 2424 2112 473 0 18 0 chr9 58587034 58587091 -59275536 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 1572 221 123 78 chr9 58587091 58587174 -59275453 - L1MCb LINE L1 -4633 2112 2034 186 43 0 0 chr9 58587174 58587197 -59275430 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1572 221 123 78 chr9 58587197 58587480 -59275147 - L1MCb LINE L1 -4711 2034 1746 257 91 0 0 chr9 58587489 58587522 -59275105 - Alu SINE Alu -12 290 258 4363 236 44 7 chr9 58587527 58588694 -59273933 - L1MCb LINE L1 -4851 1194 20 1063 161 6 0 chr9 58589335 58589509 -59273118 - AluSg/x SINE Alu 0 310 136 2554 65 0 0 chr9 58589519 58589826 -59272801 - AluY SINE Alu -4 307 1 190 0 67 0 chr9 58640206 58640236 -59222391 + (CAAAAA)n Simple_repeat Simple_repeat 1 32 0 2367 80 0 3 chr9 58640602 58640903 -59221724 + AluY SINE Alu 1 300 -11 3114 190 57 3 chr9 58640969 58641642 -59220985 + L1MCa LINE L1 76 784 -5642 1670 177 26 3 chr9 58641646 58641956 -59220671 + MER2 DNA MER2_type 2 318 -27 5045 220 87 59 chr9 58641967 58645274 -59217353 + L1MCa LINE L1 791 4195 -2231 624 330 63 14 chr9 58645380 58645744 -59216883 + MLT1J1 LTR MaLR 65 446 0 450 340 46 35 chr9 58647351 58647633 -59214994 + L3 LINE CR1 463 747 -830 918 132 7 14 chr9 58648703 58648847 -59213780 + AluJb SINE Alu 170 312 0 970 176 67 5 chr9 58649220 58649430 -59213197 + MER58A DNA MER1_type 2 224 0 258 272 37 25 chr9 58649602 58649683 -59212944 + L2 LINE L2 3230 3311 -2 21 0 0 0 chr9 58649932 58649953 -59212674 + AT_rich Low_complexity Low_complexity 1 21 0 210 71 0 0 chr9 58650188 58650216 -59212411 + (CAAAA)n Simple_repeat Simple_repeat 4 31 0 881 104 42 0 chr9 58650280 58650424 -59212203 - L1MB3 LINE L1 -2 6181 6032 513 313 65 8 chr9 58653338 58653584 -59209043 - MIR SINE MIR -1 261 2 688 287 27 5 chr9 58656222 58656410 -59206217 + MIR3 SINE MIR 3 194 -14 230 353 35 17 chr9 58656600 58656716 -59205911 - MIR SINE MIR -61 147 30 241 271 169 8 chr9 58657025 58657143 -59205484 + MIR SINE MIR 48 184 -78 196 266 89 25 chr9 58658021 58658100 -59204527 + MIR3 SINE MIR 113 196 -12 2371 58 7 7 chr9 58658393 58658702 -59203925 - AluY SINE Alu -2 309 1 400 272 14 68 chr9 58658841 58658988 -59203639 + MER5B DNA MER1_type 38 176 -2 240 86 0 0 chr9 58659373 58659408 -59203219 + (T)n Simple_repeat Simple_repeat 1 35 0 198 0 0 0 chr9 58659884 58659906 -59202721 + (ATG)n Simple_repeat Simple_repeat 2 23 0 23 68 0 0 chr9 58659946 58659990 -59202637 + AT_rich Low_complexity Low_complexity 1 44 0 1549 157 56 3 chr9 58660005 58660310 -59202317 - L1MA4A LINE L1 -1 6302 5982 1358 212 45 9 chr9 58660411 58660746 -59201881 - L1M2a LINE L1 -5138 2030 1684 913 328 44 17 chr9 58660756 58661161 -59201466 - L1M2a LINE L1 -5978 1190 775 2471 281 31 29 chr9 58661206 58662151 -59200476 - L1M2a LINE L1 -6220 948 2 1410 275 54 55 chr9 58662232 58663115 -59199512 - HAL1 LINE L1 -31 2476 1595 279 307 44 34 chr9 58663098 58663303 -59199324 - L1ME LINE L1 -408 5754 5548 * 439 275 0 0 chr9 58663340 58663460 -59199167 - HAL1 LINE L1 -1132 1375 1256 1148 209 15 33 chr9 58663799 58664134 -59198493 + MER1A DNA MER1_type 187 515 -14 1336 76 53 13 chr9 58664143 58664368 -59198259 - L1MA8 LINE L1 -48 6243 6010 228 257 113 64 chr9 58664392 58664719 -59197908 - HAL1 LINE L1 -1357 1150 808 23 40 0 0 chr9 58665477 58665502 -59197125 + AT_rich Low_complexity Low_complexity 1 25 0 3739 179 65 17 chr9 58666127 58666340 -59196287 + L1MB7 LINE L1 5127 5329 -855 2234 114 3 0 chr9 58666340 58666638 -59195989 + AluSx SINE Alu 1 299 -13 3739 179 65 17 chr9 58666638 58667386 -59195241 + L1MB7 LINE L1 5329 6132 -52 31 0 0 0 chr9 58667456 58667487 -59195140 + AT_rich Low_complexity Low_complexity 1 31 0 338 300 9 18 chr9 58667992 58668102 -59194525 + MER63A DNA MER1_type 102 210 0 530 326 110 27 chr9 58668285 58668804 -59193823 + MLT1K LTR MaLR 27 588 0 314 269 23 9 chr9 58668810 58668956 -59193671 + L1ME1 LINE L1 6037 6184 0 3025 113 22 2 chr9 58670433 58670877 -59191750 + MLT2A2 LTR ERVL 1 453 0 13500 68 2 8 chr9 58670891 58672687 -59189940 + HERVL LTR ERVL 3063 4847 -807 2066 229 8 2 chr9 58672861 58673372 -59189255 + L1PB1 LINE L1 2527 3040 -3106 5840 209 8 1 chr9 58673431 58674859 -59187768 - L1 LINE L1 -1736 4410 2973 5471 160 7 3 chr9 58674862 58676546 -59186081 + L1PB1 LINE L1 4456 6143 -8 873 246 19 26 chr9 58676808 58677072 -59185555 - MER34 LTR ERV1 -280 262 1 273 283 79 46 chr9 58677225 58677356 -59185271 + MIR SINE MIR 16 147 -61 24 0 0 0 chr9 58678247 58678271 -59184356 + AT_rich Low_complexity Low_complexity 1 24 0 2009 147 0 17 chr9 58678291 58678646 -59183981 - L1PB1 LINE L1 -21 6130 5782 809 134 0 14 chr9 58678709 58678851 -59183776 - L1PB1 LINE L1 -358 5793 5654 1932 133 0 0 chr9 58678852 58679123 -59183504 - AluSx SINE Alu -14 298 28 24 53 0 0 chr9 58679409 58679447 -59183180 + AT_rich Low_complexity Low_complexity 1 38 0 452 56 113 0 chr9 58679447 58679518 -59183109 - L1M1 LINE L1 -807 5497 5419 * 568 178 0 47 chr9 58679506 58679635 -59182992 - L1 LINE L1 -2298 3848 3726 9346 192 43 11 chr9 58679760 58684498 -59178129 - L1PBa LINE L1 -1809 5053 6 1156 172 62 16 chr9 58684630 58684938 -59177689 - MER33 DNA MER1_type -1 323 2 2962 181 36 19 chr9 58685350 58686072 -59176555 - L1 LINE L1 -2368 3778 3045 23 33 0 0 chr9 58686072 58686102 -59176525 + AT_rich Low_complexity Low_complexity 1 30 0 5308 167 10 11 chr9 58686113 58687863 -59174764 - L1PB1 LINE L1 -23 6128 4380 232 301 14 14 chr9 58688264 58688407 -59174220 + (TAAA)n Simple_repeat Simple_repeat 4 146 0 1971 124 11 0 chr9 58688466 58688739 -59173888 + AluSq SINE Alu 33 308 -5 2024 158 37 34 chr9 58688790 58689336 -59173291 - MLT2A2 LTR ERVL -2 552 1 1443 161 0 5 chr9 58689362 58689585 -59173042 - AluJo SINE Alu -21 291 70 22 0 0 0 chr9 58689607 58689629 -59172998 + AT_rich Low_complexity Low_complexity 1 22 0 663 152 134 18 chr9 58689986 58690150 -59172477 - MER53 DNA DNA -6 183 1 635 211 72 7 chr9 58690411 58690563 -59172064 - MER58B DNA MER1_type 0 341 180 22 56 0 0 chr9 58690717 58690753 -59171874 + AT_rich Low_complexity Low_complexity 1 36 0 1550 295 72 77 chr9 58690759 58691473 -59171154 + L2 LINE L2 917 1622 -1692 2152 213 21 58 chr9 58691473 58692046 -59170581 + MLT2B3 LTR ERVL 1 552 -2 1550 295 72 77 chr9 58692046 58692702 -59169925 + L2 LINE L2 1622 2280 -1034 396 276 41 28 chr9 58692897 58693042 -59169585 + L2 LINE L2 2733 2879 -435 6558 94 6 21 chr9 58693047 58694063 -59168564 - MER11C LTR ERVK 0 1071 71 221 234 0 0 chr9 58694617 58694664 -59167963 + (CA)n Simple_repeat Simple_repeat 1 47 0 468 0 0 0 chr9 58695346 58695398 -59167229 + (CA)n Simple_repeat Simple_repeat 2 53 0 2141 201 51 4 chr9 58696836 58697394 -59165233 - MLT1E2 LTR MaLR 0 626 60 1046 90 13 1 chr9 58697629 58697808 -59164819 + L1PA16 LINE L1 5549 5740 -426 1047 98 6 24 chr9 58697839 58698003 -59164624 + L1PA16 LINE L1 6004 6164 -2 219 313 50 15 chr9 58698267 58698405 -59164222 + MIR3 SINE MIR 14 158 -66 636 269 18 85 chr9 58698434 58698776 -59163851 + MER102b DNA MER1_type 4 322 -19 199 269 130 9 chr9 58698781 58698889 -59163738 + MIR3 SINE MIR 82 202 -6 221 159 0 23 chr9 58700449 58700493 -59162134 + (TGGG)n Simple_repeat Simple_repeat 3 45 0 21 0 0 0 chr9 58701097 58701118 -59161509 + AT_rich Low_complexity Low_complexity 1 21 0 204 305 25 59 chr9 58702431 58702549 -59160078 + MIR3 SINE MIR 12 125 -83 2032 110 7 0 chr9 58703316 58703597 -59159030 - AluSg1 SINE Alu -14 295 13 2659 136 43 4 chr9 58703597 58704060 -59158567 - L1PA14 LINE L1 -3 6874 6394 1295 113 0 5 chr9 58704076 58704271 -59158356 - L1PB1 LINE L1 -7 6144 5951 1426 108 0 0 chr9 58704271 58704475 -59158152 - L1PA14 LINE L1 -465 6412 6209 1939 146 6 38 chr9 58704475 58704790 -59157837 - AluSx SINE Alu -7 305 1 8288 174 27 28 chr9 58704790 58706619 -59156008 - L1PA14 LINE L1 -816 6046 4220 2780 136 50 17 chr9 58706612 58707560 -59155067 - L1PA14 LINE L1 -5100 1763 636 * 1096 151 5 0 chr9 58707562 58707761 -59154866 - L1PA14 LINE L1 -6663 200 1 499 141 16 16 chr9 58707771 58707892 -59154735 - L1P LINE L1 -2958 3904 3784 231 281 55 73 chr9 58707964 58708074 -59154553 + L2 LINE L2 1932 2040 -1274 854 189 11 65 chr9 58708074 58708259 -59154368 - FAM SINE Alu 0 175 1 231 281 55 73 chr9 58708259 58708312 -59154315 + L2 LINE L2 2040 2092 -1222 205 289 40 0 chr9 58708467 58708543 -59154084 + L2 LINE L2 2436 2514 -800 1820 222 28 6 chr9 58708909 58709378 -59153249 - MER110 LTR ERV1 -12 479 1 447 338 42 7 chr9 58709550 58709692 -59152935 + L2 LINE L2 3125 3271 -1 191 262 49 90 chr9 58711789 58711911 -59150716 - MIR SINE MIR -34 228 112 192 40 0 0 chr9 58712446 58712471 -59150156 + (TA)n Simple_repeat Simple_repeat 2 26 0 2277 71 11 0 chr9 58712491 58712774 -59149853 - AluY SINE Alu -25 286 1 744 298 135 36 chr9 58712846 58713335 -59149292 - L2 LINE L2 0 3313 2779 909 210 5 37 chr9 58713811 58714025 -59148602 + MER20 DNA MER1_type 1 207 -12 563 316 68 21 chr9 58714805 58715232 -59147395 + HAL1b LINE L1 123 569 -779 813 189 0 0 chr9 58715670 58715797 -59146830 + AluJb SINE Alu 1 127 -185 329 296 102 21 chr9 58716083 58716269 -59146358 - LTR16C LTR ERVL -67 424 224 327 263 89 40 chr9 58716837 58717240 -59145387 + L1ME LINE L1 3523 3945 -2201 549 105 0 0 chr9 58717437 58717513 -59145114 - Alu SINE Alu -17 295 220 527 313 76 29 chr9 58717514 58717954 -59144673 + L1ME LINE L1 4190 4659 -1487 434 66 0 16 chr9 58717960 58718021 -59144606 - THE1B LTR MaLR 0 364 305 352 261 88 79 chr9 58718420 58718713 -59143914 + L1ME LINE L1 5093 5399 -747 893 261 42 86 chr9 58718718 58719285 -59143342 + MER34 LTR ERV1 1 542 0 361 253 112 75 chr9 58719289 58719455 -59143172 + L1ME LINE L1 5402 5560 -561 2128 116 0 13 chr9 58719455 58719756 -59142871 + AluSx SINE Alu 1 297 -15 361 253 112 75 chr9 58719756 58719989 -59142638 + L1ME LINE L1 5560 5819 -302 547 204 0 18 chr9 58720002 58720115 -59142512 + AluJb SINE Alu 1 111 -201 219 298 182 41 chr9 58720461 58720582 -59142045 + L2 LINE L2 3126 3263 -9 324 64 0 0 chr9 58721229 58721276 -59141351 + (TTTTG)n Simple_repeat Simple_repeat 4 50 0 186 167 0 0 chr9 58721670 58721706 -59140921 + (TA)n Simple_repeat Simple_repeat 2 37 0 180 399 85 7 chr9 58721958 58722111 -59140516 - MIR3 SINE MIR -11 197 33 266 0 29 0 chr9 58722168 58722202 -59140425 + (CA)n Simple_repeat Simple_repeat 2 36 0 2501 53 0 28 chr9 58723801 58724119 -59138508 - AluY SINE Alu -2 309 1 389 325 126 5 chr9 58724223 58724414 -59138213 + MIR SINE MIR 48 261 -1 26 50 0 0 chr9 58725373 58725413 -59137214 + AT_rich Low_complexity Low_complexity 1 40 0 1188 212 76 93 chr9 58725495 58725526 -59137101 + MER34B LTR ERV1 8 38 -527 2098 105 3 41 chr9 58725526 58725841 -59136786 - AluSx SINE Alu -9 303 1 1188 212 76 93 chr9 58725841 58726376 -59136251 + MER34B LTR ERV1 38 564 -1 228 35 0 0 chr9 58726466 58726495 -59136132 + (CA)n Simple_repeat Simple_repeat 2 30 0 552 293 29 6 chr9 58726511 58726685 -59135942 - MER5B DNA MER1_type 0 178 1 33 0 0 0 chr9 58727263 58727296 -59135331 + AT_rich Low_complexity Low_complexity 1 33 0 249 329 0 0 chr9 58729366 58729442 -59133185 - MER5B DNA MER1_type -78 100 25 2448 101 41 16 chr9 58729453 58729819 -59132808 - THE1C LTR MaLR 0 375 1 330 218 236 18 chr9 58729902 58730012 -59132615 + MER5A DNA MER1_type 56 189 0 305 279 33 49 chr9 58730268 58730390 -59132237 - L1ME4a LINE L1 -16 6105 5986 1506 174 32 0 chr9 58730872 58731125 -59131502 - AluJo SINE Alu -4 308 48 488 183 0 0 chr9 58731242 58731324 -59131303 - AluS SINE Alu -231 82 1 2079 116 3 0 chr9 58731975 58732260 -59130367 + AluSg SINE Alu 2 287 -23 435 149 0 0 chr9 58733149 58733223 -59129404 + (TGGA)n Simple_repeat Simple_repeat 1 74 0 302 289 11 0 chr9 58733338 58733428 -59129199 + MLT1K LTR MaLR 498 588 0 341 204 0 19 chr9 58734064 58734167 -59128460 + GA-rich Low_complexity Low_complexity 2 102 0 221 234 0 0 chr9 58736752 58736799 -59125828 + (CA)n Simple_repeat Simple_repeat 1 47 0 468 0 0 0 chr9 58737484 58737536 -59125091 + (CA)n Simple_repeat Simple_repeat 2 53 0 2141 201 51 4 chr9 58738974 58739532 -59123095 - MLT1E2 LTR MaLR 0 626 60 1046 90 13 1 chr9 58739767 58739946 -59122681 + L1PA16 LINE L1 5549 5740 -426 1047 98 6 24 chr9 58739977 58740141 -59122486 + L1PA16 LINE L1 6004 6164 -2 219 313 50 15 chr9 58740405 58740543 -59122084 + MIR3 SINE MIR 14 158 -66 636 269 18 85 chr9 58740572 58740914 -59121713 + MER102b DNA MER1_type 4 322 -19 199 269 130 9 chr9 58740919 58741027 -59121600 + MIR3 SINE MIR 82 202 -6 221 159 0 23 chr9 58742587 58742631 -59119996 + (TGGG)n Simple_repeat Simple_repeat 3 45 0 21 0 0 0 chr9 58743235 58743256 -59119371 + AT_rich Low_complexity Low_complexity 1 21 0 204 305 25 59 chr9 58744569 58744687 -59117940 + MIR3 SINE MIR 12 125 -83 2147 100 17 3 chr9 58745455 58745745 -59116882 - AluSc SINE Alu -15 294 1 288 261 0 0 chr9 58745773 58745842 -59116785 + MER3 DNA MER1_type 44 112 -97 237 91 0 0 chr9 58745885 58745918 -59116709 + MER3 DNA MER1_type 2592 2624 0 1569 186 116 14 chr9 58746125 58746479 -59116148 + MLT1B LTR MaLR 1 390 0 317 291 60 26 chr9 58746604 58746721 -59115906 - MIR SINE MIR -18 244 124 980 194 25 6 chr9 58747384 58747661 -59114966 - MLT1A2 LTR MaLR -12 362 5 2327 53 0 23 chr9 58747877 58748176 -59114451 - AluY SINE Alu -19 292 1 2590 53 0 0 chr9 58749629 58749930 -59112697 - AluY SINE Alu -9 302 2 460 215 17 73 chr9 58750992 58751169 -59111458 - L1MEd LINE L1 -4893 1226 1060 1541 150 196 12 chr9 58751169 58751510 -59111117 + MSTA LTR MaLR 23 426 -2 291 270 18 9 chr9 58753351 58753462 -59109165 + (CATATA)n Simple_repeat Simple_repeat 3 114 0 1272 192 63 22 chr9 58754351 58754622 -59108005 - AluJo SINE Alu -30 282 1 1714 176 34 66 chr9 58754733 58754976 -59107651 + MSTD LTR MaLR 1 227 -169 183 42 0 0 chr9 58754976 58755000 -59107627 + (TC)n Simple_repeat Simple_repeat 1 24 0 1714 176 34 66 chr9 58755000 58755165 -59107462 + MSTD LTR MaLR 227 396 0 2394 171 9 24 chr9 58755234 58755701 -59106926 - MLT1C LTR MaLR -7 460 1 792 228 73 35 chr9 58755726 58756015 -59106612 + L1MC4 LINE L1 3503 3802 -2344 1245 239 115 34 chr9 58756031 58756776 -59105851 + MER21B LTR ERV1 14 852 -11 434 244 0 23 chr9 58756786 58756917 -59105710 + L1MC4 LINE L1 3801 3928 -2218 3783 230 56 23 chr9 58757432 58758118 -59104509 + L1MC4 LINE L1 3912 4574 -1592 198 0 0 0 chr9 58758118 58758140 -59104487 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 3783 230 56 23 chr9 58758140 58759602 -59103025 + L1MC4 LINE L1 4574 5771 -395 393 330 57 10 chr9 58759670 58760073 -59102554 + L1MC4a LINE L1 3613 4034 -2112 255 242 21 32 chr9 58760082 58760177 -59102450 + (CATATA)n Simple_repeat Simple_repeat 3 96 0 1583 259 89 27 chr9 58760177 58760841 -59101786 + MER44D DNA MER2_type 1 705 0 289 280 79 28 chr9 58760861 58761075 -59101552 + L1MC4a LINE L1 4617 4841 -1305 457 327 48 32 chr9 58761549 58761989 -59100638 + L1MC4a LINE L1 5464 5910 -1898 297 0 0 0 chr9 58762079 58762112 -59100515 + (TG)n Simple_repeat Simple_repeat 1 33 0 267 237 26 0 chr9 58762215 58762291 -59100336 + A-rich Low_complexity Low_complexity 2 79 0 273 261 57 34 chr9 58762729 58762817 -59099810 - MER91C DNA MER1_type -20 120 31 21 36 0 0 chr9 58765826 58765854 -59096773 + AT_rich Low_complexity Low_complexity 1 28 0 2093 183 8 15 chr9 58766028 58766421 -59096206 - MLT1B LTR MaLR 0 390 1 447 287 57 5 chr9 58766886 58767095 -59095532 + L1MEd LINE L1 994 1213 -4992 305 274 76 38 chr9 58767117 58767274 -59095353 + L1MEd LINE L1 1219 1381 -4834 3326 157 116 15 chr9 58767274 58767989 -59094638 + LTR48 LTR ERV1 1 787 0 2017 112 58 0 chr9 58768090 58768368 -59094259 + AluSx SINE Alu 1 294 -18 284 273 18 9 chr9 58768371 58768481 -59094146 + HAL1 LINE L1 1485 1595 -912 350 280 43 59 chr9 58768576 58768762 -59093865 + L1MEd LINE L1 1630 1812 -4584 364 328 69 5 chr9 58769155 58769533 -59093094 + L1MEd LINE L1 2514 2915 -3300 2270 114 0 0 chr9 58769540 58769846 -59092781 + AluSg SINE Alu 1 306 -4 463 115 42 52 chr9 58769877 58769973 -59092654 + L1MA3 LINE L1 6210 6304 -1 589 238 7 71 chr9 58770140 58770353 -59092274 + MLT1J2 LTR MaLR 243 441 -9 373 343 34 34 chr9 58770510 58770743 -59091884 + MIR SINE MIR 10 242 -20 238 244 26 26 chr9 58771097 58771175 -59091452 + MLT1K LTR MaLR 511 588 0 22 0 0 0 chr9 58771547 58771569 -59091058 + AT_rich Low_complexity Low_complexity 1 22 0 2092 110 0 57 chr9 58773120 58773446 -59089181 - AluSq SINE Alu 0 309 1 369 361 60 32 chr9 58773823 58774039 -59088588 + MIR SINE MIR 20 241 -21 259 197 0 15 chr9 58774201 58774267 -59088360 - MLT1C LTR MaLR -241 226 162 832 180 85 9 chr9 58774269 58774443 -59088184 - MLT1C LTR MaLR -240 227 33 420 20 0 0 chr9 58774443 58774492 -59088135 + (TA)n Simple_repeat Simple_repeat 2 50 0 832 180 85 9 chr9 58774492 58774528 -59088099 - MLT1C LTR MaLR -434 33 1 1439 265 68 36 chr9 58774554 58775510 -59087117 + L1MEc LINE L1 1257 2243 -4153 350 188 12 12 chr9 58776095 58776175 -59086452 - MER116 DNA Mariner 0 80 1 387 0 0 0 chr9 58776343 58776386 -59086241 + (TAGA)n Simple_repeat Simple_repeat 1 43 0 243 0 0 0 chr9 58776387 58776414 -59086213 + (CAGG)n Simple_repeat Simple_repeat 1 27 0 2196 89 39 0 chr9 58777090 58777372 -59085255 + AluY SINE Alu 1 293 -18 25 90 0 0 chr9 58778013 58778080 -59084547 + AT_rich Low_complexity Low_complexity 1 67 0 541 325 48 24 chr9 58778141 58778433 -59084194 + L1MEc LINE L1 102 400 -5996 501 280 67 76 chr9 58778485 58778828 -59083799 - MLT1H LTR MaLR -1 548 209 42185 38 3 1 chr9 58779054 58785209 -59077418 + L1PA3 LINE L1 6 6166 0 1673 182 38 74 chr9 58785305 58785502 -59077125 + MSTB1 LTR MaLR 1 204 -228 216 0 0 0 chr9 58785502 58785526 -59077101 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1673 182 38 74 chr9 58785526 58785773 -59076854 + MSTB1 LTR MaLR 204 429 -3 180 152 0 0 chr9 58786236 58786269 -59076358 + (TTG)n Simple_repeat Simple_repeat 3 35 0 1753 141 0 4 chr9 58786271 58786520 -59076107 - AluSx SINE Alu -27 285 38 2270 85 0 0 chr9 58788069 58788385 -59074242 - AluY SINE Alu 0 316 1 1515 183 31 24 chr9 58788394 58788684 -59073943 - AluJb SINE Alu -16 296 5 668 179 8 0 chr9 58788721 58788838 -59073789 - FLAM_C SINE Alu -25 118 1 8293 174 32 34 chr9 58788893 58789990 -59072637 + L1MB1 LINE L1 3389 4486 -1682 2137 107 0 0 chr9 58789990 58790270 -59072357 + AluSx SINE Alu 19 298 -14 8293 174 32 34 chr9 58790270 58791955 -59070672 + L1MB1 LINE L1 4486 6168 0 2486 229 38 62 chr9 58792063 58792574 -59070053 - L1M4c LINE L1 -4633 1751 1272 303 28 0 0 chr9 58792574 58792610 -59070017 + (TG)n Simple_repeat Simple_repeat 1 36 0 2486 229 38 62 chr9 58792610 58793028 -59069599 - L1M4c LINE L1 -5112 1272 845 6995 176 16 20 chr9 58793031 58793888 -59068739 - L1PB1 LINE L1 -287 5864 5004 2265 124 0 0 chr9 58793888 58794186 -59068441 + AluSx SINE Alu 1 298 -14 6995 176 16 20 chr9 58794186 58795621 -59067006 - L1PB1 LINE L1 -1147 5004 3592 1513 257 54 33 chr9 58796292 58796846 -59065781 - MER74A LTR ERVL -1 621 1 356 291 97 0 chr9 58797047 58797181 -59065446 + L2 LINE L2 3167 3313 0 393 347 51 20 chr9 58797184 58797380 -59065247 + MIR SINE MIR 54 255 -7 280 219 0 55 chr9 58797845 58797918 -59064709 - L2 LINE L2 -1018 2296 2228 2539 72 0 0 chr9 58798234 58798539 -59064088 + AluY SINE Alu 1 305 -6 1932 162 3 0 chr9 58798611 58798913 -59063714 + AluSx SINE Alu 8 310 -2 424 315 115 10 chr9 58799055 58799255 -59063372 - MIR SINE MIR -29 233 13 372 313 88 43 chr9 58799340 58799768 -59062859 + MLT1K LTR MaLR 95 580 -8 343 348 7 21 chr9 58799793 58799934 -59062693 + MIR SINE MIR 32 170 -92 436 315 0 0 chr9 58800105 58800216 -59062411 - L2 LINE L2 -4 3268 3158 464 274 107 25 chr9 58801368 58801565 -59061062 - MIR SINE MIR -48 214 2 234 0 0 0 chr9 58802167 58802193 -59060434 + (CCCTG)n Simple_repeat Simple_repeat 1 26 0 2152 132 26 0 chr9 58804417 58804721 -59057906 - AluSx SINE Alu 0 312 1 508 307 92 24 chr9 58804905 58805543 -59057084 - L1MEd LINE L1 -4879 1326 792 2243 123 0 0 chr9 58806792 58807100 -59055527 - AluSc SINE Alu -1 308 1 21 0 0 0 chr9 58808469 58808490 -59054137 + AT_rich Low_complexity Low_complexity 1 21 0 2221 123 0 3 chr9 58808530 58808832 -59053795 + AluSx SINE Alu 1 301 -11 2252 96 3 7 chr9 58809074 58809375 -59053252 - AluSx SINE Alu -10 302 3 1166 308 50 2 chr9 58809874 58810355 -59052272 + LTR33 LTR ERVL 16 519 -2 966 295 82 27 chr9 58812674 58812905 -59049722 + LTR16A LTR ERVL 18 282 -168 2371 71 0 0 chr9 58812905 58813199 -59049428 + AluY SINE Alu 5 298 -13 966 295 82 27 chr9 58813199 58813371 -59049256 + LTR16A LTR ERVL 282 443 -7 198 0 0 0 chr9 58813562 58813584 -59049043 + (TTA)n Simple_repeat Simple_repeat 2 23 0 3974 101 33 29 chr9 58813680 58814312 -59048315 + MER41B LTR ERV1 1 635 0 907 300 31 42 chr9 58814554 58815004 -59047623 - LTR16A1 LTR ERVL 0 457 13 227 352 33 0 chr9 58815618 58815709 -59046918 + MIR3 SINE MIR 70 163 -45 * 1375 317 85 31 chr9 58815708 58816707 -59045920 - L2 LINE L2 -1 3312 2256 245 236 24 79 chr9 58816752 58816879 -59045748 + MIR SINE MIR 120 239 -23 2443 82 0 0 chr9 58816938 58817244 -59045383 - AluY SINE Alu -5 306 1 2413 97 0 0 chr9 58818381 58818681 -59043946 + AluSc SINE Alu 1 300 -9 2234 51 0 93 chr9 58818682 58819015 -59043612 + AluY SINE Alu 2 303 -8 221 323 203 15 chr9 58819459 58819592 -59043035 - MER91A DNA MER1_type -27 169 12 26 64 0 0 chr9 58822759 58822806 -59039821 + AT_rich Low_complexity Low_complexity 1 47 0 2349 76 7 0 chr9 58822830 58823119 -59039508 + AluSp SINE Alu 1 291 -22 185 297 55 11 chr9 58823997 58824088 -59038539 - MIR SINE MIR -54 208 114 1935 165 0 7 chr9 58824972 58825275 -59037352 - AluJb SINE Alu -9 303 3 878 164 30 22 chr9 58825746 58826351 -59036276 + L1MB4 LINE L1 5565 6174 -6 2694 240 69 39 chr9 58827723 58828659 -59033968 - L1ME3A LINE L1 -5 6165 5208 1861 63 119 4 chr9 58828753 58829050 -59033577 - AluY SINE Alu 0 326 1 2303 60 4 4 chr9 58829077 58829358 -59033269 - AluY SINE Alu -30 281 1 217 132 0 0 chr9 58829628 58829666 -59032961 + (T)n Simple_repeat Simple_repeat 1 38 0 205 245 20 0 chr9 58829702 58829751 -59032876 + (TA)n Simple_repeat Simple_repeat 2 51 0 1746 194 3 3 chr9 58829826 58830136 -59032491 - AluJo SINE Alu -2 310 1 209 273 0 0 chr9 58830419 58830463 -59032164 + (TGGA)n Simple_repeat Simple_repeat 2 45 0 2345 93 0 13 chr9 58830584 58830895 -59031732 + AluY SINE Alu 1 307 -4 1100 286 119 72 chr9 58831206 58831972 -59030655 + L1MC4a LINE L1 5533 6261 -1547 2041 180 52 0 chr9 58831972 58832317 -59030310 + MLT1A1 LTR MaLR 3 365 0 1100 286 119 72 chr9 58832317 58832412 -59030215 + L1MC4a LINE L1 6261 6350 -1458 891 54 7 141 chr9 58832412 58832518 -59030109 + L1MA1 LINE L1 6174 6256 -46 1840 148 36 0 chr9 58832518 58832796 -59029831 + AluSx SINE Alu 1 288 -24 891 54 7 141 chr9 58832796 58832838 -59029789 + L1MA1 LINE L1 6256 6302 0 1100 286 119 72 chr9 58832838 58833292 -59029335 + L1MC4a LINE L1 6350 6911 -897 263 194 0 22 chr9 58833317 58833564 -59029063 + AluJo SINE Alu 1 287 -15 2659 223 76 49 chr9 58833569 58834537 -59028090 + L1MC5 LINE L1 6906 7900 -61 2208 158 40 0 chr9 58836426 58836774 -59025853 - MLT1A1 LTR MaLR 0 365 4 21 0 0 0 chr9 58836850 58836871 -59025756 + AT_rich Low_complexity Low_complexity 1 21 0 180 258 212 38 chr9 58836897 58837029 -59025598 - MIR3 SINE MIR -42 166 12 640 274 86 26 chr9 58837466 58837700 -59024927 + MIR SINE MIR 9 256 -6 2574 103 109 28 chr9 58838670 58838846 -59023781 + MSTA LTR MaLR 1 161 -267 2306 98 0 0 chr9 58838846 58839142 -59023485 + AluY SINE Alu 1 296 -15 2574 103 109 28 chr9 58839142 58839361 -59023266 + MSTA LTR MaLR 161 428 0 555 269 16 18 chr9 58839468 58839673 -59022954 - MLT1H LTR MaLR -236 173 1 188 219 110 55 chr9 58840703 58840776 -59021851 + MIR SINE MIR 31 107 -155 1132 211 55 163 chr9 58840784 58841433 -59021194 - MLT1G LTR MaLR 0 590 12 279 289 48 0 chr9 58841444 58841527 -59021100 + MIR SINE MIR 119 205 -57 184 274 137 0 chr9 58842041 58842114 -59020513 + MIR SINE MIR 47 129 -133 779 304 137 34 chr9 58842494 58843115 -59019512 + L2 LINE L2 1820 2504 -810 1545 174 61 17 chr9 58843180 58843474 -59019153 - AluJo SINE Alu -5 307 1 2444 90 0 0 chr9 58843484 58843785 -59018842 - AluSx SINE Alu -11 301 1 502 229 75 63 chr9 58843790 58844043 -59018584 - MER112 DNA MER1_type 0 256 1 250 309 49 0 chr9 58844049 58844130 -59018497 + L2 LINE L2 2646 2730 -584 413 331 22 14 chr9 58844401 58844540 -59018087 + L2 LINE L2 3133 3272 0 348 284 156 0 chr9 58844534 58844675 -59017952 + MIR SINE MIR 48 210 -52 * 592 265 27 65 chr9 58845167 58845352 -59017275 - MER5B DNA MER1_type 0 178 1 204 182 0 0 chr9 58847944 58847988 -59014639 + (TG)n Simple_repeat Simple_repeat 1 44 0 735 254 70 15 chr9 58848228 58848429 -59014198 - MIR SINE MIR -43 219 8 303 337 0 0 chr9 58848721 58848822 -59013805 + (TAG)n Simple_repeat Simple_repeat 1 101 0 340 313 15 45 chr9 58848825 58848959 -59013668 - MIR SINE MIR -16 246 117 2358 98 0 3 chr9 58849172 58849477 -59013150 - AluSc SINE Alu -5 304 1 863 200 97 63 chr9 58849777 58850029 -59012598 - MER113 DNA MER1_type? -92 429 164 865 240 16 0 chr9 58850029 58850212 -59012415 - MER5A DNA MER1_type 0 189 4 863 200 97 63 chr9 58850212 58850259 -59012368 - MER113 DNA MER1_type? -357 164 120 1883 165 3 7 chr9 58850261 58850558 -59012069 + AluJo SINE Alu 1 296 -16 2611 91 34 0 chr9 58850589 58850940 -59011687 - LTR12 LTR ERV1 0 714 352 2185 125 0 10 chr9 58851230 58851542 -59011085 - AluSc SINE Alu 0 309 1 1712 153 27 30 chr9 58851543 58851843 -59010784 - AluJb SINE Alu -13 299 1 297 188 43 0 chr9 58851985 58852054 -59010573 - MER116 DNA Mariner 0 80 9 372 317 56 30 chr9 58852063 58852331 -59010296 - HAL1b LINE L1 -979 369 95 22 35 0 0 chr9 58852558 58852587 -59010040 + AT_rich Low_complexity Low_complexity 1 29 0 4512 146 57 83 chr9 58853960 58855536 -59007091 + pTR5 LTR ERV1 741 2438 0 2277 98 0 0 chr9 58855880 58856186 -59006441 + AluY SINE Alu 1 306 -5 240 233 98 45 chr9 58856830 58856963 -59005664 + L1MEc LINE L1 2023 2162 -4234 2452 168 134 146 chr9 58856971 58857023 -59005604 + L1MC3 LINE L1 6719 6770 -1015 2224 57 0 97 chr9 58857023 58857354 -59005273 + AluY SINE Alu 13 311 0 2452 168 134 146 chr9 58857354 58857625 -59005002 + L1MC3 LINE L1 6770 7043 -742 206 32 32 0 chr9 58857625 58857656 -59004971 + (TAGA)n Simple_repeat Simple_repeat 3 34 0 2452 168 134 146 chr9 58857656 58857732 -59004895 + L1MC3 LINE L1 7043 7118 -667 282 222 0 99 chr9 58857732 58857813 -59004814 + MLT1F1 LTR MaLR 50 122 -445 2452 168 134 146 chr9 58857813 58857843 -59004784 + L1MC3 LINE L1 7118 7147 -638 2060 115 6 45 chr9 58857843 58858011 -59004616 - AluSx SINE Alu -10 302 150 621 0 0 0 chr9 58858011 58858080 -59004547 + (TA)n Simple_repeat Simple_repeat 2 70 0 2060 115 6 45 chr9 58858080 58858225 -59004402 - AluSx SINE Alu -162 150 1 2452 168 134 146 chr9 58858225 58858579 -59004048 + L1MC3 LINE L1 7147 7572 -213 1860 164 0 3 chr9 58858579 58858871 -59003756 + AluJo SINE Alu 1 291 -21 2452 168 134 146 chr9 58858871 58859081 -59003546 + L1MC3 LINE L1 7572 7783 -2 21 0 0 0 chr9 58859090 58859111 -59003516 + AT_rich Low_complexity Low_complexity 1 21 0 1826 124 0 23 chr9 58859121 58859387 -59003240 + AluSx SINE Alu 1 260 -52 239 227 36 82 chr9 58859537 58859647 -59002980 - L1MC5 LINE L1 -50 7911 7807 225 0 0 0 chr9 58859653 58859678 -59002949 + (CA)n Simple_repeat Simple_repeat 2 26 0 1237 303 30 35 chr9 58859828 58860423 -59002204 + L1MC4a LINE L1 5319 5910 -1898 1690 85 0 0 chr9 58861955 58862166 -59000461 + AluSg/x SINE Alu 92 302 -10 1654 138 0 0 chr9 58862399 58862624 -59000003 + AluSx SINE Alu 7 231 -81 186 43 0 0 chr9 58862639 58862662 -58999965 + (A)n Simple_repeat Simple_repeat 1 23 0 2397 303 113 6 chr9 58863107 58864309 -58998318 - L2 LINE L2 -37 3276 1840 336 48 0 0 chr9 58864415 58864457 -58998170 + (CA)n Simple_repeat Simple_repeat 2 43 0 204 152 0 22 chr9 58865436 58865482 -58997145 + (TAGA)n Simple_repeat Simple_repeat 4 48 0 2429 64 0 0 chr9 58865483 58865781 -58996846 - AluY SINE Alu -12 299 2 2172 111 69 33 chr9 58866172 58866534 -58996093 - THE1C LTR MaLR 0 375 1 447 333 60 5 chr9 58867183 58867384 -58995243 - MIR SINE MIR -30 232 21 360 264 182 20 chr9 58867611 58867759 -58994868 - MER5A DNA MER1_type -9 180 9 1785 149 7 46 chr9 58868400 58868579 -58994048 - AluSx SINE Alu -22 290 126 221 0 35 0 chr9 58868579 58868608 -58994019 + (TAA)n Simple_repeat Simple_repeat 2 31 0 1785 149 7 46 chr9 58868608 58868730 -58993897 - AluSx SINE Alu -186 126 1 1519 211 3 3 chr9 58868732 58869026 -58993601 - AluJo SINE Alu -18 294 1 362 239 142 22 chr9 58869496 58869630 -58992997 + MLT1K LTR MaLR 82 231 -357 222 347 41 34 chr9 58869913 58870060 -58992567 - L3 LINE CR1 -1080 497 350 2500 55 3 0 chr9 58870260 58870552 -58992075 + AluSp SINE Alu 1 293 -20 454 266 217 10 chr9 58870722 58870929 -58991698 - MLT1J LTR MaLR -58 453 204 630 291 90 42 chr9 58870943 58871072 -58991555 - MLT1I LTR MaLR -14 395 274 2058 127 61 73 chr9 58871072 58871467 -58991160 + MLT1B LTR MaLR 1 390 0 630 291 90 42 chr9 58871467 58871699 -58990928 - MLT1I LTR MaLR -135 274 47 552 273 86 9 chr9 58871760 58872053 -58990574 - MLT1H1 LTR MaLR 0 555 190 268 317 0 0 chr9 58872083 58872165 -58990462 - MLT1H1 LTR MaLR -471 84 3 371 190 51 0 chr9 58872177 58872256 -58990371 - MLT1J LTR MaLR -331 180 98 192 152 0 0 chr9 58872269 58872302 -58990325 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 21 71 0 0 chr9 58872465 58872507 -58990120 + AT_rich Low_complexity Low_complexity 1 42 0 27 62 0 0 chr9 58872541 58872589 -58990038 + AT_rich Low_complexity Low_complexity 1 48 0 1213 314 251 19 chr9 58872831 58873922 -58988705 + L2 LINE L2 83 1426 -1888 2072 134 0 3 chr9 58873997 58874304 -58988323 + AluSx SINE Alu 1 306 -6 189 107 0 0 chr9 58874955 58874983 -58987644 + (TTTC)n Simple_repeat Simple_repeat 2 29 0 1849 127 35 11 chr9 58875529 58875812 -58986815 - AluSx SINE Alu -21 291 2 284 330 0 0 chr9 58875839 58875933 -58986694 + (CA)n Simple_repeat Simple_repeat 1 94 0 451 283 133 6 chr9 58876982 58877155 -58985472 + MIR SINE MIR 28 222 -40 280 345 50 7 chr9 58877663 58877802 -58984825 - L2 LINE L2 0 3313 3169 1352 293 21 12 chr9 58878040 58878460 -58984167 - LTR16B LTR ERVL 0 464 41 1000 143 0 0 chr9 58878460 58878593 -58984034 + FLAM_C SINE Alu 1 133 0 1665 161 90 61 chr9 58878875 58879214 -58983413 - MLT1B LTR MaLR 0 390 36 1982 127 3 28 chr9 58879214 58879528 -58983099 + AluSx SINE Alu 1 307 0 1665 161 90 61 chr9 58879528 58879566 -58983061 - MLT1B LTR MaLR -354 36 1 260 263 0 0 chr9 58879702 58879759 -58982868 + GA-rich Low_complexity Low_complexity 4 60 0 222 306 72 27 chr9 58880883 58880994 -58981633 + MIR SINE MIR 20 135 -73 274 154 15 15 chr9 58883151 58883216 -58979411 + GA-rich Low_complexity Low_complexity 4 68 0 210 297 129 30 chr9 58883474 58883575 -58979052 - L2 LINE L2 0 3272 3162 1790 82 0 43 chr9 58884394 58884651 -58977976 - L1PB1 LINE L1 0 6151 5906 2498 72 0 0 chr9 58886513 58886819 -58975808 - AluY SINE Alu -1 310 5 350 271 0 0 chr9 58886991 58887076 -58975551 + L2 LINE L2 3188 3272 0 220 330 170 0 chr9 58887277 58887383 -58975244 + L2 LINE L2 3145 3268 -4 2259 89 10 3 chr9 58887473 58887766 -58974861 + AluSx SINE Alu 5 299 -13 1606 220 9 12 chr9 58887766 58888098 -58974529 + MLT1A1 LTR MaLR 35 365 0 2100 104 14 0 chr9 58888180 58888483 -58974144 + AluSx SINE Alu 1 307 0 294 310 0 47 chr9 58888524 58888653 -58973974 + GA-rich Low_complexity Low_complexity 2 124 0 288 239 159 25 chr9 58888769 58888932 -58973695 + L1MEd LINE L1 3 187 -5932 23 0 0 0 chr9 58889173 58889196 -58973431 + AT_rich Low_complexity Low_complexity 1 23 0 496 176 154 0 chr9 58889346 58889437 -58973190 - MLT1J LTR MaLR -316 195 91 2250 74 14 17 chr9 58889615 58889936 -58972691 - AluY SINE Alu 0 311 1 1097 68 8 0 chr9 58889971 58890104 -58972523 + AluSg SINE Alu 1 134 -176 1413 121 14 0 chr9 58890207 58890414 -58972213 + AluSg/x SINE Alu 103 312 0 724 190 16 0 chr9 58890840 58890961 -58971666 + FLAM_A SINE Alu 1 123 -10 46 33 0 0 chr9 58890963 58891023 -58971604 + AT_rich Low_complexity Low_complexity 1 60 0 2392 64 0 0 chr9 58891537 58891844 -58970783 - AluY SINE Alu 0 307 1 2218 100 7 0 chr9 58892302 58892628 -58969999 - AluSp SINE Alu 0 328 1 480 284 63 46 chr9 58892646 58892885 -58969742 - MLT1J LTR MaLR -161 350 108 482 261 48 88 chr9 58893065 58893314 -58969313 - L2 LINE L2 0 3313 3075 288 0 0 0 chr9 58893770 58893802 -58968825 + (CA)n Simple_repeat Simple_repeat 2 33 0 255 300 79 24 chr9 58894020 58894144 -58968483 + MIR SINE MIR 26 158 -71 517 215 219 49 chr9 58894464 58894729 -58967898 - MER69 DNA AcHobo 0 2526 2217 459 165 118 0 chr9 58894738 58894823 -58967804 + MER69A DNA AcHobo 1 95 -82 * 2004 258 53 62 chr9 58894816 58895456 -58967171 - MER69 DNA AcHobo -493 733 100 253 339 107 24 chr9 58895729 58895897 -58966730 - L2 LINE L2 -15 3257 3076 274 320 80 0 chr9 58895943 58896043 -58966584 + MIR SINE MIR 89 196 -66 222 62 0 0 chr9 58896195 58896227 -58966400 + (A)n Simple_repeat Simple_repeat 1 32 0 672 261 30 30 chr9 58896298 58896497 -58966130 - MLT1K LTR MaLR -61 527 329 1838 154 9 25 chr9 58897306 58897624 -58965003 - L1MB5 LINE L1 -8 6166 5854 310 337 102 12 chr9 58898024 58898190 -58964437 - MIR3 SINE MIR -10 198 18 842 144 171 0 chr9 58898271 58898417 -58964210 + FRAM SINE Alu 1 171 -5 2463 60 0 17 chr9 58900103 58900405 -58962222 - AluY SINE Alu -14 297 1 432 273 63 28 chr9 58900702 58900845 -58961782 - L2 LINE L2 -3 3269 3122 2318 86 3 0 chr9 58901253 58901544 -58961083 + AluSp SINE Alu 1 292 -21 292 232 14 0 chr9 58902726 58902795 -58959832 + CT-rich Low_complexity Low_complexity 1 70 0 203 200 25 0 chr9 58903276 58903316 -58959311 - MIR SINE MIR -142 120 80 2443 77 0 3 chr9 58903449 58903761 -58958866 + AluY SINE Alu 1 311 0 195 114 0 0 chr9 58904965 58905000 -58957627 + (GA)n Simple_repeat Simple_repeat 2 36 0 206 250 45 0 chr9 58906148 58906192 -58956435 + L2 LINE L2 3010 3055 -217 445 179 0 47 chr9 58907038 58907144 -58955483 + L1ME3 LINE L1 5968 6068 -94 569 108 41 47 chr9 58907150 58907277 -58955350 - MER53 DNA DNA -4 185 2 1136 141 32 0 chr9 58907352 58907537 -58955090 + MER20 DNA MER1_type 10 200 -19 2298 114 16 48 chr9 58907820 58908196 -58954431 + THE1B LTR MaLR 1 364 0 1124 220 90 33 chr9 58908251 58908615 -58954012 + MER119 DNA MER1_type 26 503 -80 2317 104 0 25 chr9 58908615 58908932 -58953695 + AluSx SINE Alu 1 309 -3 1124 220 90 33 chr9 58908932 58909018 -58953609 + MER119 DNA MER1_type 503 583 0 499 264 155 7 chr9 58910056 58910204 -58952423 - MER5A DNA MER1_type -6 183 14 989 176 28 11 chr9 58910227 58910409 -58952218 + MER5A DNA MER1_type 3 187 -2 350 296 61 0 chr9 58910606 58910704 -58951923 + L2 LINE L2 3159 3262 -10 1194 178 321 39 chr9 58910817 58911228 -58951399 - MLT1F LTR MaLR -9 533 7 909 276 80 20 chr9 58911254 58911957 -58950670 - L2 LINE L2 -84 3229 1712 310 271 83 0 chr9 58913529 58913625 -58949002 - MLT1H LTR MaLR 0 549 446 2048 106 0 0 chr9 58913628 58913893 -58948734 - AluSg SINE Alu -17 293 29 804 221 93 37 chr9 58913903 58914197 -58948430 - MLT1H LTR MaLR -211 384 37 1175 285 59 37 chr9 58914312 58914852 -58947775 - Charlie7 DNA MER1_type -1961 651 100 203 93 37 37 chr9 58914853 58914907 -58947720 + (TTATA)n Simple_repeat Simple_repeat 1 54 0 960 173 16 26 chr9 58915041 58915232 -58947395 - MER96B DNA MER1_type? 0 417 229 3318 157 17 4 chr9 58915339 58915882 -58946745 - L1MC1 LINE L1 -16 6317 5768 267 189 0 0 chr9 58915909 58915962 -58946665 + (TA)n Simple_repeat Simple_repeat 2 54 0 1779 234 71 18 chr9 58915974 58916422 -58946205 - MLT2B1 LTR ERVL -48 472 1 815 126 16 0 chr9 58916422 58916549 -58946078 - L1MC1 LINE L1 -566 5767 5639 384 214 0 0 chr9 58916651 58916721 -58945906 + MER96B DNA MER1_type? 347 416 -1 292 233 0 0 chr9 58916774 58916834 -58945793 + MIR SINE MIR 199 258 -4 976 76 0 0 chr9 58917450 58917569 -58945058 + FRAM SINE Alu 45 163 -13 2138 116 34 0 chr9 58918133 58918427 -58944200 - AluSp SINE Alu -9 304 1 830 176 0 0 chr9 58918889 58919025 -58943602 - FAM SINE Alu -49 136 1 1894 159 3 7 chr9 58919284 58919593 -58943034 + AluJo SINE Alu 1 308 -4 2288 92 0 10 chr9 58919629 58919932 -58942695 - AluSp SINE Alu -13 300 1 1646 160 45 11 chr9 58921807 58922094 -58940533 + AluJb SINE Alu 1 297 -15 350 140 0 0 chr9 58922391 58922441 -58940186 - Alu SINE Alu -252 50 1 2179 114 0 0 chr9 58923161 58923507 -58939120 - AluSc SINE Alu 0 346 1 1846 120 35 0 chr9 58923525 58923783 -58938844 - AluJo SINE Alu -33 279 13 258 276 103 0 chr9 58924905 58924992 -58937635 - MIR SINE MIR -86 176 81 516 332 40 26 chr9 58925534 58925838 -58936789 + L1ME LINE L1 5492 5799 -322 654 252 82 24 chr9 58925910 58926116 -58936511 + MIR SINE MIR 30 247 -15 2155 125 10 0 chr9 58926160 58926456 -58936171 + AluSx SINE Alu 1 299 -13 859 194 56 11 chr9 58927075 58927255 -58935372 + MER5A DNA MER1_type 1 188 -1 884 120 8 8 chr9 58927665 58927798 -58934829 + AluSq/x SINE Alu 1 133 -180 292 271 47 24 chr9 58928589 58928759 -58933868 + A-rich Low_complexity Low_complexity 6 179 0 400 307 51 7 chr9 58928944 58929081 -58933546 + AluJo SINE Alu 1 143 -159 1775 161 20 27 chr9 58929084 58929376 -58933251 + AluJo SINE Alu 1 290 -22 2027 139 3 0 chr9 58929390 58929678 -58932949 + AluSx SINE Alu 6 294 -18 2107 123 0 3 chr9 58930939 58931224 -58931403 - AluSx SINE Alu -18 294 11 2244 119 0 0 chr9 58931384 58931694 -58930933 - AluSg SINE Alu 0 310 1 712 152 7 58 chr9 58932406 58932544 -58930083 - FLAM_C SINE Alu -2 131 1 218 321 0 0 chr9 58934038 58934122 -58928505 + (CCA)n Simple_repeat Simple_repeat 1 84 0 333 0 0 0 chr9 58935090 58935127 -58927500 + (CA)n Simple_repeat Simple_repeat 1 37 0 189 0 0 0 chr9 58935919 58935940 -58926687 + (A)n Simple_repeat Simple_repeat 1 21 0 985 160 103 0 chr9 58936322 58936497 -58926130 + Tigger3(Golem) DNA MER2_type 2836 3028 -1 24 53 0 0 chr9 58936722 58936760 -58925867 + AT_rich Low_complexity Low_complexity 1 38 0 289 212 0 15 chr9 58936884 58936950 -58925677 - L2 LINE L2 -6 3307 3243 855 165 0 0 chr9 58937988 58938121 -58924506 - FLAM_C SINE Alu -10 133 1 29 28 0 0 chr9 58939153 58939189 -58923438 + AT_rich Low_complexity Low_complexity 1 36 0 198 0 0 0 chr9 58940124 58940146 -58922481 + (T)n Simple_repeat Simple_repeat 1 22 0 22 35 0 0 chr9 58941261 58941290 -58921337 + AT_rich Low_complexity Low_complexity 1 29 0 2005 122 6 40 chr9 58942240 58942561 -58920066 - AluSx SINE Alu -2 310 1 480 203 66 88 chr9 58945854 58946036 -58916591 + MER45A DNA AcHobo 1 178 0 2316 95 0 7 chr9 58948120 58948425 -58914202 - AluSg SINE Alu -7 303 1 2111 124 0 13 chr9 58948447 58948753 -58913874 - AluSx SINE Alu -10 302 1 2001 112 0 49 chr9 58950427 58950731 -58911896 - AluSg SINE Alu -1 309 21 1276 98 0 0 chr9 58950822 58950985 -58911642 - AluSg/x SINE Alu -12 300 138 413 174 0 0 chr9 58951159 58951228 -58911399 - AluS SINE Alu -20 289 221 833 100 27 0 chr9 58951228 58951338 -58911289 - AluSq/x SINE Alu -199 113 1 2563 68 0 3 chr9 58952043 58952354 -58910273 + AluY SINE Alu 1 310 -1 627 126 0 11 chr9 58953090 58953185 -58909442 - AluSp/q SINE Alu -15 298 205 2220 93 0 10 chr9 58953186 58953475 -58909152 - AluSq SINE Alu -27 286 1 991 191 4 80 chr9 58955422 58955647 -58906980 + MER20 DNA MER1_type 11 218 -1 2258 119 0 0 chr9 58956866 58957168 -58905459 + AluSx SINE Alu 1 302 -10 180 111 0 0 chr9 58957168 58957195 -58905432 + (GGAGA)n Simple_repeat Simple_repeat 1 27 0 2251 116 7 0 chr9 58957286 58957596 -58905031 - AluSq SINE Alu -1 312 1 1404 148 0 14 chr9 58957724 58957940 -58904687 - AluJo SINE Alu -17 295 83 452 162 0 0 chr9 58958049 58958123 -58904504 - AluJo SINE Alu -237 75 2 897 127 0 15 chr9 58959175 58959309 -58903318 - FLAM_C SINE Alu -1 132 1 7396 41 8 11 chr9 58959464 58960697 -58901930 - L1PA6 LINE L1 -2 6152 4927 328 267 291 0 chr9 58960762 58961013 -58901614 - MER5C DNA MER1_type 0 324 1 589 336 69 18 chr9 58961532 58961925 -58900702 - L3 LINE CR1 -26 1551 1139 1706 223 22 86 chr9 58962034 58962221 -58900406 - MER34 LTR ERV1 0 542 345 2335 119 0 0 chr9 58962221 58962531 -58900096 - AluSx SINE Alu -2 310 1 1706 223 22 86 chr9 58962531 58962922 -58899705 - MER34 LTR ERV1 -197 345 1 183 161 0 89 chr9 58963109 58963165 -58899462 - L2 LINE L2 -298 2974 2924 1904 141 45 25 chr9 58963584 58963938 -58898689 + MER46B DNA MER2_type 1 236 0 1373 201 58 13 chr9 58965138 58965589 -58897038 - MLT2B1 LTR ERVL 0 520 1 430 138 0 0 chr9 58965796 58965861 -58896766 - FLAM_A SINE Alu -50 92 28 264 263 54 27 chr9 58966936 58967060 -58895567 + MIR SINE MIR 16 147 -61 353 287 33 40 chr9 58969642 58969792 -58892835 - MIR SINE MIR 0 262 114 930 260 50 11 chr9 58969968 58970245 -58892382 - L1ME3A LINE L1 -5 6165 5878 2498 61 13 10 chr9 58971058 58971368 -58891259 - AluY SINE Alu 0 311 1 472 61 0 15 chr9 58972347 58972413 -58890214 - Alu SINE Alu -16 296 232 1854 39 4 9 chr9 58972415 58972647 -58889980 - L1PA7 LINE L1 -205 5949 5719 431 184 0 23 chr9 58972775 58972862 -58889765 - L1MC2 LINE L1 -20 6324 6240 2513 60 0 0 chr9 58974529 58974827 -58887800 - AluY SINE Alu -13 298 1 207 0 0 0 chr9 58974898 58974921 -58887706 + (CCCTG)n Simple_repeat Simple_repeat 1 23 0 194 318 118 0 chr9 58976192 58976277 -58886350 - L2 LINE L2 -25 3247 3153 554 265 87 0 chr9 58977178 58977363 -58885264 - MIR SINE MIR -46 216 16 351 0 0 0 chr9 58978957 58978996 -58883631 + (CA)n Simple_repeat Simple_repeat 1 39 0 554 219 133 68 chr9 58980168 58980320 -58882307 - L1MC5 LINE L1 -60 7901 7760 1690 165 102 31 chr9 58980320 58980587 -58882040 + MER7A DNA MER2_type 1 294 -2744 2521 60 0 0 chr9 58980587 58980886 -58881741 + AluY SINE Alu 1 299 -12 1690 165 102 31 chr9 58980886 58980940 -58881687 + MER7A DNA MER2_type 294 343 -3 554 219 133 68 chr9 58980940 58981066 -58881561 - L1MC5 LINE L1 -201 7760 7605 225 196 0 0 chr9 58981104 58981155 -58881472 - L1MC5 LINE L1 -516 7445 7395 384 59 0 0 chr9 58981894 58981945 -58880682 + (TGGA)n Simple_repeat Simple_repeat 4 54 0 249 180 0 0 chr9 58983612 58983662 -58878965 + CT-rich Low_complexity Low_complexity 1 50 0 1423 209 36 33 chr9 58983664 58983965 -58878662 - AluJo SINE Alu 0 302 1 22 35 0 0 chr9 58984361 58984390 -58878237 + AT_rich Low_complexity Low_complexity 1 29 0 309 294 149 32 chr9 58984818 58985066 -58877561 - MLT1J2 LTR MaLR -123 327 51 185 197 66 49 chr9 58985371 58985432 -58877195 + MIR SINE MIR 123 184 -78 343 540 0 65 chr9 58985842 58986027 -58876600 - AluYb8 SINE Alu 0 308 136 1908 125 7 7 chr9 58986076 58986357 -58876270 - AluSx SINE Alu -31 281 1 2351 90 0 0 chr9 58987313 58987613 -58875014 + AluSc SINE Alu 1 300 -9 939 112 8 22 chr9 58988304 58988438 -58874189 - FLAM_C SINE Alu -10 133 2 1749 119 102 7 chr9 58989944 58990229 -58872398 - AluSx SINE Alu 0 312 1 1158 196 33 26 chr9 58990247 58990518 -58872109 - AluJo SINE Alu -39 273 1 315 0 0 0 chr9 58990548 58990583 -58872044 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2209 93 4 0 chr9 58990585 58990865 -58871762 - AluSg SINE Alu -29 281 1 991 152 0 0 chr9 58992461 58992599 -58870028 - AluJb SINE Alu -174 138 1 999 174 0 0 chr9 58992613 58992774 -58869853 + AluJb SINE Alu 143 303 -9 844 146 5 111 chr9 58992976 58993175 -58869452 + FAM SINE Alu 1 47 -2 1190 54 20 7 chr9 58993237 58993385 -58869242 + AluSp SINE Alu 1 150 -163 208 189 105 74 chr9 58993567 58993662 -58868965 + L2 LINE L2 3140 3237 -35 2074 100 7 42 chr9 58994840 58995150 -58867477 + AluSq SINE Alu 1 299 -14 1870 187 0 0 chr9 58995194 58995504 -58867123 - AluJo SINE Alu -2 310 1 304 124 91 6 chr9 58995529 58995585 -58867042 - AluJo SINE Alu -166 136 82 2318 79 0 0 chr9 58995811 58996090 -58866537 - AluSg SINE Alu -31 279 1 2346 56 0 3 chr9 58996354 58996639 -58865988 - AluY SINE Alu -27 284 1 554 290 131 28 chr9 58997114 58997635 -58864992 + L1MC4 LINE L1 7391 8042 0 2357 79 3 22 chr9 58997764 58998079 -58864548 + AluSg SINE Alu 1 309 -1 228 200 0 0 chr9 58998079 58998129 -58864498 + (TA)n Simple_repeat Simple_repeat 1 50 0 310 233 47 0 chr9 58998130 58998216 -58864411 + L1MC4 LINE L1 6614 6703 -1339 25 31 0 0 chr9 58998307 58998339 -58864288 + AT_rich Low_complexity Low_complexity 1 32 0 2318 91 16 3 chr9 58998567 58998876 -58863751 - AluSp SINE Alu 0 313 1 2264 80 28 0 chr9 58998876 58999165 -58863462 - AluSp SINE Alu -16 297 1 2567 50 0 0 chr9 58999346 58999645 -58862982 + AluY SINE Alu 5 303 -8 1837 151 11 77 chr9 59000439 59000763 -58861864 + L1MB3 LINE L1 5814 6158 -25 1357 139 78 78 chr9 59000763 59001058 -58861569 + AluSx SINE Alu 1 295 -17 1837 151 11 77 chr9 59001058 59001077 -58861550 + L1MB3 LINE L1 6158 6133 -50 2171 110 7 0 chr9 59001077 59001369 -58861258 + AluSq SINE Alu 1 294 -19 1837 151 11 77 chr9 59001369 59001401 -58861226 + L1MB3 LINE L1 6132 6165 -18 186 397 0 35 chr9 59001508 59001624 -58861003 + MIR SINE MIR 29 140 -122 264 77 0 0 chr9 59001855 59001894 -58860733 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2128 93 0 4 chr9 59001897 59002176 -58860451 - AluSc SINE Alu -31 278 1 2356 93 0 10 chr9 59003372 59003684 -58858943 - AluY SINE Alu -2 309 1 2158 119 0 0 chr9 59004921 59005214 -58857413 + AluSx SINE Alu 5 297 -15 2162 98 7 7 chr9 59005300 59005595 -58857032 + AluSg SINE Alu 1 295 -15 1054 97 0 0 chr9 59006766 59006900 -58855727 - AluSg1 SINE Alu -175 134 1 2379 56 0 3 chr9 59007343 59007629 -58854998 + AluY SINE Alu 1 285 -26 198 103 0 0 chr9 59007629 59007658 -58854969 + (TA)n Simple_repeat Simple_repeat 1 29 0 749 152 61 38 chr9 59009185 59009317 -58853310 - FLAM_C SINE Alu -8 135 1 288 0 0 0 chr9 59009845 59009877 -58852750 + (TG)n Simple_repeat Simple_repeat 2 33 0 512 197 68 26 chr9 59010027 59010144 -58852483 - FLAM_A SINE Alu -9 124 3 308 178 118 58 chr9 59013629 59013764 -58848863 + L1ME LINE L1 5665 5809 -361 21 0 0 0 chr9 59014122 59014143 -58848484 + AT_rich Low_complexity Low_complexity 1 21 0 24 67 0 0 chr9 59014282 59014327 -58848300 + AT_rich Low_complexity Low_complexity 1 45 0 2577 64 0 3 chr9 59014707 59015019 -58847608 - AluSx SINE Alu -1 311 1 295 308 123 15 chr9 59015197 59015327 -58847300 + MIR SINE MIR 21 164 -98 2317 90 6 13 chr9 59016676 59016987 -58845640 - AluSx SINE Alu -3 309 1 897 140 65 93 chr9 59017060 59017274 -58845353 + MER20 DNA MER1_type 1 208 -11 23 0 0 0 chr9 59017490 59017513 -58845114 + AT_rich Low_complexity Low_complexity 1 23 0 207 0 0 0 chr9 59018305 59018328 -58844299 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1165 135 30 82 chr9 59018598 59018841 -58843786 + L1M2 LINE L1 5201 5455 -816 2228 92 3 0 chr9 59018841 59019123 -58843504 + AluSp SINE Alu 1 283 -30 186 43 0 0 chr9 59019126 59019149 -58843478 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 1165 135 30 82 chr9 59019149 59019230 -58843397 + L1M2 LINE L1 5457 5528 -743 2099 125 3 10 chr9 59070046 59070358 -58792269 - AluSx SINE Alu 0 312 3 2349 90 3 0 chr9 59070816 59071115 -58791512 + AluSp SINE Alu 1 300 -13 259 253 21 0 chr9 59071134 59071229 -58791398 + L1M4 LINE L1 2130 2226 -3920 2282 103 3 0 chr9 59071414 59071706 -58790921 - AluSp SINE Alu -20 293 1 2381 79 0 13 chr9 59071763 59072066 -58790561 - AluY SINE Alu -12 299 1 2203 86 0 7 chr9 59072162 59072453 -58790174 - AluY SINE Alu -22 289 1 798 298 75 82 chr9 59072453 59072650 -58789977 + L1M4 LINE L1 2684 2881 -3265 2257 98 6 16 chr9 59072650 59072965 -58789662 + AluSx SINE Alu 1 312 0 798 298 75 82 chr9 59072965 59073017 -58789610 + L1M4 LINE L1 2881 2932 -3214 2313 91 3 0 chr9 59073017 59073325 -58789302 + AluSc SINE Alu 1 309 0 798 298 75 82 chr9 59073325 59073661 -58788966 + L1M4 LINE L1 2932 3263 -2883 1669 188 7 7 chr9 59073661 59073969 -58788658 + AluJb SINE Alu 5 312 0 798 298 75 82 chr9 59073969 59074278 -58788349 + L1M4 LINE L1 3263 3573 -2573 2301 95 0 13 chr9 59074307 59074611 -58788016 + AluSq SINE Alu 1 300 -13 343 284 100 50 chr9 59074793 59074997 -58787630 + L1M4 LINE L1 3656 3881 -2265 2360 82 3 0 chr9 59074997 59075290 -58787337 + AluSg SINE Alu 1 294 -16 343 284 100 50 chr9 59075290 59075384 -58787243 + L1M4 LINE L1 3881 3969 -2177 2045 166 0 0 chr9 59075459 59075767 -58786860 - AluSx SINE Alu 0 312 5 1075 67 0 22 chr9 59075775 59075909 -58786718 - AluSg SINE Alu -179 131 1 260 271 47 39 chr9 59075981 59076110 -58786517 + L1MC/D LINE L1 5675 5804 -317 180 0 0 0 chr9 59076147 59076167 -58786460 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2045 135 4 0 chr9 59076170 59076451 -58786176 - AluSq SINE Alu -31 282 1 210 296 37 12 chr9 59077125 59077206 -58785421 - L3 LINE CR1 -1195 382 300 2194 125 3 0 chr9 59077330 59077641 -58784986 - AluSx SINE Alu 0 312 1 203 277 177 23 chr9 59077757 59077887 -58784740 + MIR3 SINE MIR 4 153 -55 237 83 0 0 chr9 59077997 59078033 -58784594 + (CA)n Simple_repeat Simple_repeat 1 36 0 2427 79 0 10 chr9 59079208 59079513 -58783114 - AluSc SINE Alu -7 302 1 191 259 69 0 chr9 59079744 59079802 -58782825 - MIR SINE MIR -127 135 74 220 231 0 19 chr9 59079802 59079854 -58782773 + CT-rich Low_complexity Low_complexity 2 52 0 2419 86 0 3 chr9 59079891 59080194 -58782433 + AluSc SINE Alu 1 302 -7 565 218 114 50 chr9 59080198 59080418 -58782209 + MIR SINE MIR 29 262 0 1694 166 43 48 chr9 59080762 59080832 -58781795 - MLT1B LTR MaLR 0 390 321 2303 91 16 13 chr9 59080832 59081141 -58781486 + AluSx SINE Alu 1 310 -2 1963 127 6 35 chr9 59081143 59081459 -58781168 + AluSx SINE Alu 1 307 -5 1694 166 43 48 chr9 59081459 59081777 -58780850 - MLT1B LTR MaLR -70 320 1 209 264 77 11 chr9 59082596 59082687 -58779940 + MIR SINE MIR 89 185 -77 197 59 59 0 chr9 59083376 59083410 -58779217 + CT-rich Low_complexity Low_complexity 2 37 0 185 32 0 65 chr9 59083431 59083462 -58779165 + (TCTCTG)n Simple_repeat Simple_repeat 2 30 0 2150 136 0 0 chr9 59084950 59085245 -58777382 - AluSx SINE Alu -17 295 1 2771 13 3 10 chr9 59085540 59085853 -58776774 + AluYa5 SINE Alu 1 311 0 21 0 0 0 chr9 59085853 59085874 -58776753 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 59087923 59087945 -58774682 + AT_rich Low_complexity Low_complexity 1 22 0 2276 81 0 3 chr9 59088239 59088522 -58774105 + AluY SINE Alu 13 294 -17 423 115 161 23 chr9 59092933 59093020 -58769607 + MER5A DNA MER1_type 3 101 -88 899 145 19 31 chr9 59093111 59093270 -58769357 + MLT1F1 LTR MaLR 411 567 0 1745 144 36 52 chr9 59093600 59093905 -58768722 - AluJo SINE Alu -11 301 2 2108 130 0 7 chr9 59094166 59094465 -58768162 + AluSx SINE Alu 1 297 -15 314 136 85 0 chr9 59094477 59094536 -58768091 - L1MA8 LINE L1 -19 6272 6209 2109 98 3 77 chr9 59094718 59095055 -58767572 - AluSx SINE Alu 0 312 1 2403 102 0 3 chr9 59095915 59096229 -58766398 - AluSq SINE Alu 0 313 1 2376 103 3 0 chr9 59096939 59097249 -58765378 + AluSp SINE Alu 3 313 0 427 237 45 96 chr9 59097461 59097609 -58765018 + MIR SINE MIR 29 168 -94 1751 174 17 3 chr9 59097609 59097903 -58764724 + AluJo SINE Alu 1 298 -14 427 237 45 96 chr9 59097903 59097931 -58764696 + MIR SINE MIR 168 196 -66 2402 80 17 0 chr9 59098026 59098328 -58764299 + AluSp SINE Alu 1 307 -6 189 132 0 0 chr9 59098370 59098408 -58764219 + (TTTG)n Simple_repeat Simple_repeat 1 38 0 2015 153 0 16 chr9 59098842 59099150 -58763477 + AluJb SINE Alu 2 304 -8 2328 102 0 0 chr9 59099197 59099490 -58763137 - AluSg SINE Alu -17 293 1 1110 115 6 23 chr9 59099740 59099914 -58762713 + MLT1B LTR MaLR 1 171 -219 1746 184 96 66 chr9 59099920 59099971 -58762656 - MSTA LTR MaLR 0 428 380 378 0 0 0 chr9 59099971 59100013 -58762614 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 2061 128 0 17 chr9 59100020 59100310 -58762317 - AluSx SINE Alu -26 286 2 1746 184 96 66 chr9 59100310 59100658 -58761969 - MSTA LTR MaLR -53 375 9 1279 128 0 10 chr9 59100714 59100910 -58761717 + MLT1B LTR MaLR 197 390 0 1903 168 0 3 chr9 59100968 59101278 -58761349 + AluSx SINE Alu 1 309 -3 526 308 66 18 chr9 59101326 59101553 -58761074 - MIR SINE MIR 0 262 25 2083 99 29 0 chr9 59103132 59103404 -58759223 - AluSx SINE Alu -32 280 1 2302 50 3 7 chr9 59104562 59104844 -58757783 - AluY SINE Alu 0 311 31 1027 180 33 0 chr9 59104955 59105138 -58757489 + MER5A DNA MER1_type 1 189 0 201 216 20 0 chr9 59105610 59105661 -58756966 - MIR SINE MIR 0 262 211 572 158 54 9 chr9 59105810 59105958 -58756669 - MIR SINE MIR -63 145 38 221 0 35 0 chr9 59105963 59105992 -58756635 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 2121 113 0 3 chr9 59105994 59106276 -58756351 - AluSg SINE Alu -29 281 1 1074 83 0 0 chr9 59106276 59106409 -58756218 - AluSg SINE Alu -177 133 1 2863 3 0 7 chr9 59106878 59107188 -58755439 - AluYa5 SINE Alu -3 308 1 663 266 82 21 chr9 59107242 59107475 -58755152 + MIR SINE MIR 16 262 0 267 293 121 0 chr9 59107544 59107660 -58754967 - MIR SINE MIR -76 186 57 1979 131 0 24 chr9 59108475 59108773 -58753854 - AluSx SINE Alu -21 291 1 755 79 10 0 chr9 59108909 59109010 -58753617 + AluSg SINE Alu 30 131 -179 1667 81 5 14 chr9 59109217 59109440 -58753187 - AluSp SINE Alu -85 228 8 200 264 144 24 chr9 59110025 59110150 -58752477 - MIR SINE MIR -42 220 81 2025 132 10 10 chr9 59110212 59110508 -58752119 - AluSx SINE Alu -13 299 4 28 0 0 0 chr9 59110574 59110602 -58752025 + AT_rich Low_complexity Low_complexity 1 28 0 416 268 0 0 chr9 59110821 59110918 -58751709 + MIR SINE MIR 150 246 -16 576 271 164 0 chr9 59111848 59112055 -58750572 - MIR SINE MIR -7 255 15 279 310 0 0 chr9 59112112 59112183 -58750444 + CT-rich Low_complexity Low_complexity 3 73 0 530 253 70 38 chr9 59113045 59113231 -58749396 + MIR SINE MIR 71 262 0 550 223 103 17 chr9 59113320 59113495 -58749132 - L2 LINE L2 -2 3311 3122 1966 130 7 11 chr9 59113777 59114087 -58748540 + AluSx SINE Alu 1 309 0 2088 111 38 0 chr9 59114376 59114665 -58747962 - AluSx SINE Alu -12 300 1 335 296 44 0 chr9 59114743 59114878 -58747749 - L2 LINE L2 -608 2706 2566 210 333 88 0 chr9 59115782 59115896 -58746731 + L2 LINE L2 3147 3270 -2 2318 116 3 0 chr9 59115924 59116235 -58746392 - AluSx SINE Alu 0 312 1 180 0 0 0 chr9 59116268 59116288 -58746339 + (GTGTG)n Simple_repeat Simple_repeat 3 22 0 2124 116 14 3 chr9 59116298 59116590 -58746037 - AluSq SINE Alu -18 295 1 671 188 73 99 chr9 59117142 59117216 -58745411 + MER5A DNA MER1_type 2 76 -113 2137 120 0 7 chr9 59117216 59117527 -58745100 + AluSx SINE Alu 1 309 0 671 188 73 99 chr9 59117527 59117643 -58744984 + MER5A DNA MER1_type 76 188 -1 291 302 28 50 chr9 59117904 59118086 -58744541 - HAL1 LINE L1 -7 2500 2323 7177 125 24 44 chr9 59118530 59119786 -58742841 - Tigger3b DNA MER2_type 0 1231 1 2359 90 0 0 chr9 59120015 59120314 -58742313 - AluY SINE Alu -12 299 1 2250 129 0 0 chr9 59120316 59120625 -58742002 - AluSq SINE Alu -4 309 1 994 139 0 13 chr9 59120872 59121023 -58741604 + AluSx SINE Alu 22 170 -142 312 138 0 31 chr9 59121151 59121216 -58741411 + Alu SINE Alu 239 301 0 21 0 0 0 chr9 59121581 59121602 -58741025 + AT_rich Low_complexity Low_complexity 1 21 0 610 271 48 75 chr9 59122153 59122271 -58740356 - L2 LINE L2 -2 3311 3191 2415 101 0 0 chr9 59122271 59122577 -58740050 - AluSc SINE Alu -3 306 1 610 271 48 75 chr9 59122577 59122790 -58739837 - L2 LINE L2 -122 3191 2989 2495 64 0 0 chr9 59124059 59124357 -58738270 + AluSg SINE Alu 1 298 -12 1420 153 112 59 chr9 59124719 59125194 -58737433 - MER1B DNA MER1_type 0 339 4 2169 128 0 10 chr9 59125452 59125765 -58736862 - AluSx SINE Alu -2 310 1 2855 9 0 16 chr9 59126383 59126699 -58735928 - AluYa5 SINE Alu 0 311 1 2229 108 0 3 chr9 59126857 59127154 -58735473 - AluSg SINE Alu -14 296 1 1856 110 13 62 chr9 59127378 59127686 -58734941 + AluSx SINE Alu 1 293 -19 2950 6 0 0 chr9 59128062 59128373 -58734254 - AluYb8 SINE Alu -7 311 1 1963 129 13 33 chr9 59128373 59128676 -58733951 - AluSg SINE Alu -13 297 1 1968 97 56 0 chr9 59128747 59129015 -58733612 - AluSp SINE Alu -20 293 11 261 0 0 0 chr9 59129846 59129875 -58732752 + (TG)n Simple_repeat Simple_repeat 2 30 0 2933 122 7 9 chr9 59129906 59130357 -58732270 - L1PB1 LINE L1 0 6151 5702 2302 98 0 0 chr9 59130489 59130785 -58731842 - AluSg SINE Alu -7 303 8 2555 60 0 0 chr9 59130885 59131183 -58731444 + AluY SINE Alu 13 310 -1 222 345 7 28 chr9 59131290 59131435 -58731192 - L2 LINE L2 -652 2662 2521 2306 64 0 30 chr9 59131733 59132028 -58730599 - AluY SINE Alu -9 302 17 936 243 67 71 chr9 59132346 59132789 -58729838 + MLT1G3 LTR MaLR 14 496 -71 2374 93 0 6 chr9 59132789 59133101 -58729526 + AluY SINE Alu 1 310 -1 936 243 67 71 chr9 59133101 59133173 -58729454 + MLT1G3 LTR MaLR 496 567 0 30 0 0 0 chr9 59133264 59133294 -58729333 + AT_rich Low_complexity Low_complexity 1 30 0 229 35 0 0 chr9 59133499 59133528 -58729099 - Alu SINE Alu -98 202 174 2303 125 0 9 chr9 59133528 59133864 -58728763 - L1PA15 LINE L1 -124 6041 5709 2382 92 0 0 chr9 59133889 59134183 -58728444 - AluSx SINE Alu -18 294 1 1629 185 34 70 chr9 59134361 59134717 -58727910 + MER7A DNA MER2_type 6 346 0 2337 93 0 0 chr9 59134736 59135036 -58727591 + AluY SINE Alu 1 300 -11 550 236 93 30 chr9 59136139 59136376 -58726251 - MER112 DNA MER1_type -1 255 4 2334 96 0 10 chr9 59136827 59137139 -58725488 - AluY SINE Alu -2 309 1 2242 114 13 0 chr9 59137772 59138079 -58724548 - AluSq SINE Alu -2 311 1 189 364 81 0 chr9 59138499 59138598 -58724029 - MIR3 SINE MIR -3 205 99 933 150 0 52 chr9 59138702 59138875 -58723752 + AluJb SINE Alu 138 301 -11 200 351 19 54 chr9 59138880 59139085 -58723542 - L2 LINE L2 -806 2508 2311 617 344 68 10 chr9 59139111 59139495 -58723132 - L2 LINE L2 -1262 2052 1647 297 0 0 0 chr9 59139916 59139949 -58722678 + (TG)n Simple_repeat Simple_repeat 2 34 0 2235 82 3 3 chr9 59139950 59140242 -58722385 - AluY SINE Alu -19 292 1 238 196 0 0 chr9 59140243 59140299 -58722328 + L1MC4 LINE L1 6640 6695 -1347 228 116 0 0 chr9 59140308 59140330 -58722297 + (TA)n Simple_repeat Simple_repeat 2 23 -21 2089 136 7 0 chr9 59140330 59140625 -58722002 - AluSx SINE Alu -15 297 1 228 116 0 0 chr9 59140625 59140645 -58721982 + (TA)n Simple_repeat Simple_repeat 22 44 0 2320 100 0 3 chr9 59140887 59141196 -58721431 + AluSp SINE Alu 1 308 -5 305 315 0 9 chr9 59141447 59141558 -58721069 + LTR67 LTR ERVL 448 557 0 364 176 72 13 chr9 59141833 59141986 -58720641 + (TA)n Simple_repeat Simple_repeat 2 163 0 2208 116 0 0 chr9 59141986 59142297 -58720330 - AluSx SINE Alu 0 311 1 525 297 82 9 chr9 59142324 59142517 -58720110 - MIR SINE MIR -12 250 36 186 71 0 0 chr9 59142517 59142545 -58720082 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 525 297 82 9 chr9 59142545 59142583 -58720044 - MIR SINE MIR -226 36 2 310 286 78 32 chr9 59142689 59142843 -58719784 - MER117 DNA MER1_type -1 196 36 182 242 32 16 chr9 59142900 59142962 -58719665 - MIR SINE MIR -99 163 101 271 273 23 11 chr9 59142981 59143069 -58719558 + MIR SINE MIR 149 237 -25 885 221 24 52 chr9 59143108 59143357 -58719270 + L1MB5 LINE L1 5933 6174 0 435 192 0 0 chr9 59143380 59143453 -58719174 - MER96 DNA MER1_type? -102 73 1 263 385 87 0 chr9 59144473 59144577 -58718050 - L2 LINE L2 -59 3213 3101 2285 83 0 38 chr9 59145309 59145483 -58717144 - AluSp SINE Alu -11 302 123 197 33 33 0 chr9 59145483 59145513 -58717114 + (TTA)n Simple_repeat Simple_repeat 2 32 0 2267 70 0 18 chr9 59145516 59145802 -58716825 - AluY SINE Alu -30 281 1 2285 83 0 38 chr9 59145802 59145937 -58716690 - AluSp SINE Alu -192 121 1 1662 168 3 34 chr9 59146224 59146521 -58716106 - AluJo SINE Alu -20 292 5 386 197 57 74 chr9 59146771 59146893 -58715734 + LTR33 LTR ERVL 402 521 0 2268 82 0 0 chr9 59147055 59147371 -58715256 - AluY SINE Alu 0 316 1 2102 119 0 7 chr9 59147487 59147812 -58714815 - AluSx SINE Alu 0 323 1 2388 101 0 0 chr9 59148675 59148981 -58713646 - AluSg SINE Alu -4 306 1 2400 63 0 0 chr9 59149062 59149349 -58713278 - AluY SINE Alu -24 287 1 425 139 127 0 chr9 59149582 59149661 -58712966 + 5S rRNA rRNA 2 90 -31 553 252 115 44 chr9 59149775 59150001 -58712626 + MLT1K LTR MaLR 335 576 -12 423 323 12 25 chr9 59150385 59150546 -58712081 - MIR SINE MIR -56 206 48 181 235 20 39 chr9 59151337 59151388 -58711239 + MIR SINE MIR 192 241 -21 2320 104 7 0 chr9 59151517 59151816 -58710811 - AluSx SINE Alu -11 301 1 659 242 201 16 chr9 59151974 59152218 -58710409 - LTR16A1 LTR ERVL -1 456 168 433 163 0 35 chr9 59152297 59152383 -58710244 + ORSL DNA AcHobo 1 83 -192 2029 120 0 10 chr9 59152392 59152692 -58709935 + AluY SINE Alu 1 297 -14 2210 104 10 0 chr9 59152703 59153001 -58709626 + AluSq SINE Alu 1 301 -12 771 200 142 0 chr9 59153071 59153261 -58709366 + ORSL DNA AcHobo 59 275 0 1800 178 86 43 chr9 59153434 59153809 -58708818 + MLT1C LTR MaLR 6 404 -63 2576 53 0 0 chr9 59153809 59154108 -58708519 - AluY SINE Alu -12 299 1 1800 178 86 43 chr9 59154108 59154175 -58708452 + MLT1C LTR MaLR 404 467 0 357 244 12 0 chr9 59154406 59154488 -58708139 + HAL1 LINE L1 1493 1575 -932 2238 117 0 0 chr9 59154657 59154956 -58707671 + AluSg SINE Alu 1 299 -11 342 336 73 0 chr9 59154995 59155105 -58707522 + L2 LINE L2 3151 3268 -4 460 284 119 0 chr9 59155472 59155648 -58706979 - MIR SINE MIR -10 252 56 2081 118 0 0 chr9 59155687 59155990 -58706637 + AluSx SINE Alu 5 307 0 2228 78 60 0 chr9 59156046 59156330 -58706297 + AluY SINE Alu 1 301 -10 193 299 82 88 chr9 59156330 59156477 -58706150 + MER5A DNA MER1_type 44 189 0 316 200 111 52 chr9 59156546 59156709 -58705918 - L1M4 LINE L1 -1191 4955 4781 2307 111 0 0 chr9 59157235 59157533 -58705094 + AluSc SINE Alu 1 298 -11 1978 114 18 0 chr9 59157662 59157974 -58704653 + AluSg1 SINE Alu 1 317 0 181 302 0 0 chr9 59158032 59158085 -58704542 - MIR SINE MIR -69 139 87 2070 141 3 0 chr9 59158672 59158969 -58703658 - AluSx SINE Alu -10 302 5 244 366 60 8 chr9 59159222 59159356 -58703271 - MER5A DNA MER1_type -6 183 43 5920 145 12 14 chr9 59159799 59160447 -58702180 + L1PA16 LINE L1 4919 5567 -599 613 89 0 0 chr9 59160447 59160526 -58702101 - MADE1 DNA Mariner -1 79 1 5920 145 12 14 chr9 59160526 59160746 -58701881 + L1PA16 LINE L1 5567 5786 -380 2178 108 10 0 chr9 59160746 59161034 -58701593 + AluSg SINE Alu 17 307 -3 5920 145 12 14 chr9 59161034 59161422 -58701205 + L1PA16 LINE L1 5786 6166 0 241 347 119 68 chr9 59161446 59161665 -58700962 + L2 LINE L2 3038 3267 -5 3488 105 10 22 chr9 59161727 59162224 -58700403 + L1PB2 LINE L1 5659 6149 -2 2560 71 0 3 chr9 59162226 59162537 -58700090 + AluY SINE Alu 1 310 -1 22 0 0 0 chr9 59162695 59162717 -58699910 + AT_rich Low_complexity Low_complexity 1 22 0 352 307 96 40 chr9 59162805 59163056 -58699571 - L2 LINE L2 -267 3005 2739 1919 132 3 65 chr9 59163316 59163641 -58698986 + AluJo SINE Alu 1 305 -7 360 0 0 0 chr9 59164018 59164058 -58698569 + (CA)n Simple_repeat Simple_repeat 2 41 0 411 173 0 0 chr9 59164339 59164420 -58698207 + CT-rich Low_complexity Low_complexity 2 82 0 642 79 0 0 chr9 59164425 59164514 -58698113 + (TCTCC)n Simple_repeat Simple_repeat 5 93 0 402 146 0 0 chr9 59164843 59164898 -58697729 - Alu SINE Alu -255 55 1 301 311 96 36 chr9 59165433 59165600 -58697027 - MER117 DNA MER1_type 0 197 21 204 216 0 0 chr9 59165943 59165980 -58696647 + (CA)n Simple_repeat Simple_repeat 2 38 0 234 122 11 200 chr9 59166007 59166097 -58696530 + MIR3 SINE MIR 108 180 -28 23 0 0 0 chr9 59166238 59166261 -58696366 + AT_rich Low_complexity Low_complexity 1 23 0 359 102 0 0 chr9 59166877 59166926 -58695701 - MLT2B1 LTR ERVL 0 520 472 307 148 457 0 chr9 59166932 59167013 -58695614 - MLT2B1 LTR ERVL -179 341 224 279 240 140 30 chr9 59167111 59167211 -58695416 - MER5C DNA MER1_type -6 318 208 1679 84 9 0 chr9 59167218 59167444 -58695183 + AluY SINE Alu 1 228 -83 338 261 11 11 chr9 59168224 59168312 -58694315 + MIR SINE MIR 64 151 -111 245 328 39 64 chr9 59169254 59169458 -58693169 + L3b LINE CR1 1102 1300 -283 2768 165 172 7 chr9 59169632 59170208 -58692419 - LTR51 LTR ERV1 0 671 1 2690 111 22 5 chr9 59170423 59170836 -58691791 + LTR56 LTR ERV1 9 428 -17 3076 126 9 2 chr9 59170836 59171265 -58691362 - MER57B LTR ERV1 0 434 3 12502 103 108 59 chr9 59171267 59173391 -58689236 - MER57B-int LTR ERV1 0 7537 5310 6491 200 76 42 chr9 59173397 59174771 -58687856 - MER57B-int LTR ERV1 -2232 2648 2395 2252 112 0 3 chr9 59174771 59175075 -58687552 - AluY SINE Alu -8 303 1 6491 200 76 42 chr9 59175075 59175741 -58686886 - MER57B-int LTR ERV1 -2485 2395 1753 2671 130 23 5 chr9 59175964 59176394 -58686233 + LTR56 LTR ERV1 6 443 -2 215 30 0 30 chr9 59185382 59185415 -58677212 + (CAAAA)n Simple_repeat Simple_repeat 1 32 0 1224 195 9 9 chr9 59185592 59185818 -58676809 - HUERS-P3 LTR ERV1 -8675 244 19 4463 119 2 5 chr9 59185836 59186450 -58676177 - LTR9 LTR ERV1 0 612 1 2141 174 59 13 chr9 59186450 59186910 -58675717 + L1MB7 LINE L1 5704 6184 0 2705 164 115 7 chr9 59186919 59187491 -58675136 + L1MC1 LINE L1 5700 6333 0 210 321 122 8 chr9 59187678 59187809 -58674818 + L2 LINE L2 3127 3272 0 1621 163 7 4 chr9 59187831 59188107 -58674520 - AluSq SINE Alu -9 304 28 304 235 25 12 chr9 59188896 59188977 -58673650 + MIR SINE MIR 63 144 -118 2557 143 26 5 chr9 59189266 59189691 -58672936 - MER57B LTR ERV1 0 434 1 2791 153 187 5 chr9 59190078 59190646 -58671981 - LTR51 LTR ERV1 0 671 1 2564 137 21 5 chr9 59190865 59191295 -58671332 + LTR56 LTR ERV1 9 445 0 272 225 38 0 chr9 59191879 59191957 -58670670 + LTR45 LTR ERV1 343 463 -62 261 0 0 0 chr9 59193451 59193480 -58669147 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 222 37 0 0 chr9 59194283 59194310 -58668317 + (T)n Simple_repeat Simple_repeat 1 27 0 2272 117 0 0 chr9 59199147 59199455 -58663172 - AluSg SINE Alu -2 308 1 2237 85 39 0 chr9 59199670 59199951 -58662676 + AluSq SINE Alu 6 297 -16 2308 105 10 0 chr9 59200767 59201071 -58661556 + AluSg SINE Alu 1 307 -3 301 289 0 67 chr9 59201130 59201205 -58661422 - MIR3 SINE MIR -1 207 143 1863 168 64 9 chr9 59201205 59201551 -58661076 + MLT1A1 LTR MaLR 1 365 0 301 289 0 67 chr9 59201551 59201610 -58661017 - MIR3 SINE MIR -65 143 82 33 0 0 0 chr9 59202719 59202752 -58659875 + AT_rich Low_complexity Low_complexity 1 33 0 814 145 8 0 chr9 59202999 59203130 -58659497 + FLAM_C SINE Alu 2 133 0 295 216 10 49 chr9 59203173 59203275 -58659352 + L1MC5 LINE L1 7832 7929 -32 813 158 16 0 chr9 59203911 59204175 -58658452 + CT-rich Low_complexity Low_complexity 1 268 0 2041 131 7 3 chr9 59204192 59204497 -58658130 - AluSx SINE Alu -6 306 1 2589 4 0 0 chr9 59204554 59204826 -58657801 - AluYa5 SINE Alu -4 307 36 2086 114 35 0 chr9 59205148 59205437 -58657190 + AluSq SINE Alu 1 299 -14 40 37 0 0 chr9 59205961 59206015 -58656612 + AT_rich Low_complexity Low_complexity 1 54 0 2456 75 3 7 chr9 59206776 59207083 -58655544 + AluSq SINE Alu 1 306 -7 561 333 33 55 chr9 59207093 59207253 -58655374 + L1ME4a LINE L1 4549 4711 -1435 195 42 0 0 chr9 59207253 59207277 -58655350 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 561 333 33 55 chr9 59207277 59207626 -58655001 + L1ME4a LINE L1 4711 5047 -1099 412 321 82 46 chr9 59207716 59207833 -58654794 + L1ME4a LINE L1 5628 5739 -382 2236 124 39 33 chr9 59207833 59208195 -58654432 - THE1B LTR MaLR 0 364 1 412 321 82 46 chr9 59208195 59208357 -58654270 + L1ME4a LINE L1 5739 5917 -204 2391 89 0 0 chr9 59208584 59208888 -58653739 + AluY SINE Alu 1 304 -7 680 292 59 79 chr9 59209435 59210007 -58652620 + L2 LINE L2 2720 3305 -8 355 326 83 52 chr9 59210197 59210285 -58652342 - L2 LINE L2 0 3272 3188 2129 117 0 0 chr9 59210285 59210602 -58652025 + AluSx SINE Alu 2 318 0 355 326 83 52 chr9 59210602 59210920 -58651707 - L2 LINE L2 -84 3188 2852 206 348 18 18 chr9 59211075 59211187 -58651440 - L2 LINE L2 -482 2832 2721 222 37 0 0 chr9 59211593 59211620 -58651007 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 2181 101 4 0 chr9 59211627 59211905 -58650722 - AluSp SINE Alu -33 280 2 1410 298 57 2 chr9 59212066 59212486 -58650141 - LTR16A LTR ERVL 0 450 8 2071 148 0 7 chr9 59212508 59212813 -58649814 - AluSx SINE Alu -8 304 2 392 282 103 0 chr9 59212912 59213029 -58649598 - L2 LINE L2 -4 3268 3140 192 40 0 0 chr9 59213033 59213058 -58649569 + (TAA)n Simple_repeat Simple_repeat 2 26 0 1923 142 17 7 chr9 59213104 59213580 -58649047 + AluSx SINE Alu 1 479 0 204 125 0 0 chr9 59213580 59213612 -58649015 + (GGGA)n Simple_repeat Simple_repeat 1 32 0 1294 189 25 56 chr9 59213671 59213993 -58648634 - MLT1D LTR MaLR -193 312 1 2277 104 0 3 chr9 59214008 59214316 -58648311 - AluSx SINE Alu -5 307 1 278 246 246 0 chr9 59214316 59214430 -58648197 + MIR SINE MIR 121 262 0 213 39 0 0 chr9 59215819 59215845 -58646782 + (CA)n Simple_repeat Simple_repeat 2 27 0 727 186 0 76 chr9 59216401 59216546 -58646081 + FLAM_A SINE Alu 1 134 -8 229 291 101 0 chr9 59217312 59217340 -58645287 + MER117 DNA MER1_type 1 25 -172 2031 162 15 25 chr9 59217340 59217734 -58644893 + MLT1B LTR MaLR 1 390 0 229 291 101 0 chr9 59217734 59217784 -58644843 + MER117 DNA MER1_type 25 87 -110 1286 201 0 111 chr9 59217985 59218318 -58644309 + AluJo SINE Alu 1 296 -6 2190 105 0 7 chr9 59218534 59218838 -58643789 - AluY SINE Alu -7 304 3 2347 85 0 25 chr9 59219265 59219583 -58643044 + AluY SINE Alu 1 310 -1 2225 107 3 3 chr9 59219603 59219903 -58642724 + AluSp SINE Alu 3 302 -11 2430 76 0 3 chr9 59220024 59220326 -58642301 - AluY SINE Alu -10 301 1 2946 227 16 64 chr9 59220694 59220763 -58641864 - L1ME1 LINE L1 -17 6149 6078 3192 127 88 32 chr9 59220763 59221221 -58641406 + LTR24C LTR ERV1 1 432 -203 189 0 0 0 chr9 59221221 59221242 -58641385 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 2318 90 0 0 chr9 59221246 59221535 -58641092 - AluSg SINE Alu -21 289 1 3192 127 88 32 chr9 59221535 59221672 -58640955 + LTR24C LTR ERV1 434 635 0 2946 227 16 64 chr9 59221672 59222031 -58640596 - L1ME1 LINE L1 -88 6078 5703 2129 127 3 10 chr9 59222031 59222338 -58640289 + AluSp SINE Alu 1 305 -8 2946 227 16 64 chr9 59222338 59222729 -58639898 - L1ME1 LINE L1 -463 5703 5369 1843 169 49 30 chr9 59222729 59223097 -58639530 + THE1C LTR MaLR 1 375 0 2946 227 16 64 chr9 59223097 59223138 -58639489 - L1ME1 LINE L1 -797 5369 5328 402 114 38 0 chr9 59223141 59223220 -58639407 + CT-rich Low_complexity Low_complexity 3 84 0 2189 122 10 0 chr9 59223223 59223526 -58639101 - AluSx SINE Alu -2 310 5 1963 247 55 27 chr9 59223533 59224164 -58638463 - L1ME1 LINE L1 -840 5306 4658 335 303 10 0 chr9 59224164 59224263 -58638364 + L2 LINE L2 2542 2641 -673 2282 112 0 0 chr9 59224289 59224592 -58638035 - AluSg SINE Alu -7 303 1 2109 125 4 0 chr9 59224657 59224938 -58637689 + AluSx SINE Alu 1 282 -30 1299 204 86 64 chr9 59225116 59225489 -58637138 - MLT1B LTR MaLR -7 383 3 180 234 0 0 chr9 59225509 59225556 -58637071 + (TAGG)n Simple_repeat Simple_repeat 1 47 0 1821 134 39 11 chr9 59225916 59226199 -58636428 + AluJb SINE Alu 3 293 -19 1507 112 86 0 chr9 59226216 59226484 -58636143 + L1MA4 LINE L1 6003 6293 -7 1824 147 7 20 chr9 59226584 59226877 -58635750 + AluJo SINE Alu 20 308 -4 288 0 0 0 chr9 59226882 59226914 -58635713 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 935 99 8 0 chr9 59226914 59227096 -58635531 + AluY SINE Alu 173 355 0 535 281 13 7 chr9 59227738 59227891 -58634736 + MIR SINE MIR 53 206 -56 914 223 49 93 chr9 59227963 59228308 -58634319 - MER102b DNA MER1_type -1 340 11 204 262 36 60 chr9 59228309 59228371 -58634256 - L2 LINE L2 -30 3283 3222 1675 266 37 2 chr9 59228371 59228804 -58633823 + LTR16A LTR ERVL 3 450 0 204 262 36 60 chr9 59228804 59228825 -58633802 - L2 LINE L2 -91 3222 3202 239 0 0 31 chr9 59233218 59233250 -58629377 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 209 240 80 70 chr9 59233440 59233540 -58629087 + L2 LINE L2 693 793 -2521 1722 173 0 3 chr9 59233587 59233876 -58628751 - AluSx SINE Alu -24 288 1 242 218 0 0 chr9 59233993 59234048 -58628579 + L1MB7 LINE L1 6117 6171 -13 3174 179 76 11 chr9 59234886 59235634 -58626993 + L1MB8 LINE L1 5381 6177 -1 1898 167 143 8 chr9 59235773 59236150 -58626477 - MSTA LTR MaLR 0 428 1 1977 137 38 62 chr9 59236261 59236598 -58626029 - THE1B LTR MaLR 0 364 35 2341 98 0 7 chr9 59236598 59236904 -58625723 + AluY SINE Alu 1 304 -7 1977 137 38 62 chr9 59236904 59236939 -58625688 - THE1B LTR MaLR -329 35 1 8306 95 166 3 chr9 59236939 59238298 -58624329 - THE1B-int LTR MaLR 0 1580 1 1978 138 45 28 chr9 59238300 59238654 -58623973 - THE1B LTR MaLR -2 362 3 21 57 0 0 chr9 59238661 59238696 -58623931 + AT_rich Low_complexity Low_complexity 1 35 0 779 244 73 60 chr9 59238973 59239022 -58623605 - L1MC4 LINE L1 -7 8035 7988 2161 168 62 12 chr9 59239022 59239428 -58623199 - MSTB LTR MaLR 0 426 1 779 244 73 60 chr9 59239428 59239533 -58623094 - L1MC4 LINE L1 -54 7988 7886 363 23 0 0 chr9 59239533 59239577 -58623050 + (CA)n Simple_repeat Simple_repeat 2 45 0 779 244 73 60 chr9 59239577 59239901 -58622726 - L1MC4 LINE L1 -156 7886 7550 2170 240 55 38 chr9 59241614 59242409 -58620218 - L1MCa LINE L1 -3096 3330 2522 2497 51 3 19 chr9 59242420 59242736 -58619891 + AluYa5 SINE Alu 1 311 0 1063 132 0 7 chr9 59242736 59242888 -58619739 + AluSq SINE Alu 126 276 -37 255 61 0 0 chr9 59242893 59242926 -58619701 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 573 189 50 22 chr9 59242926 59243160 -58619467 - L1MCa LINE L1 -3902 2524 2280 2457 157 90 35 chr9 59243161 59243759 -58618868 - L1MA9 LINE L1 -37 6275 5645 1735 212 175 57 chr9 59243765 59243938 -58618689 - L1MCb LINE L1 -3929 2816 2665 2254 96 3 7 chr9 59243938 59244240 -58618387 - AluSp SINE Alu -12 301 1 1735 212 175 57 chr9 59244240 59244400 -58618227 - L1MCb LINE L1 -4080 2665 2525 2425 57 0 7 chr9 59244400 59244696 -58617931 - AluY SINE Alu -17 294 1 1735 212 175 57 chr9 59244696 59244778 -58617849 - L1MCb LINE L1 -4220 2525 2454 1625 206 0 14 chr9 59244778 59245069 -58617558 - AluJb SINE Alu -25 287 1 1735 212 175 57 chr9 59245069 59245397 -58617230 - L1MCb LINE L1 -4291 2454 2166 473 0 18 0 chr9 59245397 59245454 -58617173 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 1735 212 175 57 chr9 59245454 59245537 -58617090 - L1MCb LINE L1 -4579 2166 2094 186 43 0 0 chr9 59245537 59245560 -58617067 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1735 212 175 57 chr9 59245560 59245842 -58616785 - L1MCb LINE L1 -4651 2094 1559 242 91 0 0 chr9 59245851 59245884 -58616743 - AluSq SINE Alu -12 289 257 3922 233 44 7 chr9 59245889 59247031 -58615596 - L1MCb LINE L1 -4851 1194 45 263 243 0 107 chr9 59247403 59247506 -58615121 + MLT1H LTR MaLR 349 440 -109 23 0 0 0 chr9 59247554 59247577 -58615050 + AT_rich Low_complexity Low_complexity 1 23 0 2353 124 0 0 chr9 59247616 59247972 -58614655 - MER47A DNA MER2_type 0 366 11 360 179 0 0 chr9 59247968 59248024 -58614603 + MER47A DNA MER2_type 311 366 0 * 2068 126 0 10 chr9 59249261 59249562 -58613065 + AluSx SINE Alu 1 298 -14 462 222 9 9 chr9 59249574 59249682 -58612945 + L1MD1 LINE L1 18 125 -6415 846 181 0 0 chr9 59249690 59249817 -58612810 - FLAM_C SINE Alu -16 127 1 1118 234 7 22 chr9 59249828 59250101 -58612526 + L1MD1 LINE L1 122 390 -6150 * 1331 201 23 15 chr9 59250099 59250492 -58612135 + L1MD1 LINE L1 1078 1473 -5067 4284 183 59 10 chr9 59250595 59251478 -58611149 + L1MD1 LINE L1 5398 6358 -278 548 36 0 60 chr9 59251478 59251562 -58611065 + (TA)n Simple_repeat Simple_repeat 2 80 0 4284 183 59 10 chr9 59251562 59251856 -58610771 + L1MD1 LINE L1 6358 6636 0 406 195 65 52 chr9 59251850 59252004 -58610623 + L1MA10 LINE L1 6165 6320 -14 * 2028 229 101 10 chr9 59252360 59252937 -58609690 + L1MC4 LINE L1 6458 7086 -956 190 404 88 6 chr9 59253173 59253344 -58609283 - L2 LINE L2 -806 2508 2324 820 171 32 42 chr9 59254089 59254305 -58608322 - L1MB8 LINE L1 -6 6172 5959 2045 100 4 0 chr9 59254314 59254574 -58608053 - AluSq SINE Alu -52 261 1 279 286 41 31 chr9 59254676 59254822 -58607805 + MIR SINE MIR 107 253 -9 195 333 0 0 chr9 59255045 59255102 -58607525 + MIR SINE MIR 110 166 -96 241 389 94 3 chr9 59255794 59256082 -58606545 + L2 LINE L2 2430 2743 -571 542 245 7 39 chr9 59256096 59256251 -58606376 - MER5B DNA MER1_type -24 154 5 662 230 80 35 chr9 59256513 59256739 -58605888 + LTR16A1 LTR ERVL 217 452 -5 377 276 134 15 chr9 59257093 59257227 -58605400 - L2 LINE L2 -5 3267 3118 960 129 0 0 chr9 59257620 59257752 -58604875 - AluSq/x SINE Alu -180 132 1 719 163 14 0 chr9 59257762 59257903 -58604724 - L1MA10 LINE L1 -13 6321 6179 275 266 289 16 chr9 59258103 59258231 -58604396 + MIR3 SINE MIR 25 187 -21 2270 119 3 0 chr9 59258485 59258795 -58603832 - AluY SINE Alu 0 311 1 363 295 107 0 chr9 59260679 59260791 -58601836 - L2 LINE L2 -36 3236 3113 229 353 16 52 chr9 59261083 59261277 -58601350 - MIR SINE MIR -56 206 21 2497 77 0 3 chr9 59261692 59262004 -58600623 + AluY SINE Alu 1 311 0 351 227 143 34 chr9 59262004 59262123 -58600504 - HAL1b LINE L1 -479 869 738 1060 160 0 40 chr9 59262214 59262414 -58600213 + MER3 DNA MER1_type 2 193 -16 319 150 280 30 chr9 59262520 59262620 -58600007 - HAL1b LINE L1 -849 499 375 7116 56 1 2 chr9 59262721 59264365 -58598262 + L1PA5 LINE L1 4510 6148 -6 3098 211 46 20 chr9 59265264 59265290 -58597337 - L1M4 LINE L1 -896 5250 5226 2992 212 15 20 chr9 59265290 59265946 -58596681 - MER82 DNA MER2_type 0 653 1 3098 211 46 20 chr9 59265946 59266804 -58595823 - L1M4 LINE L1 -920 5226 4343 201 277 0 0 chr9 59266872 59266919 -58595708 + L2 LINE L2 2925 2971 -301 3413 118 30 6 chr9 59266953 59267214 -58595413 + L1MA9 LINE L1 5522 5775 -537 312 27 0 0 chr9 59267214 59267251 -58595376 + (CA)n Simple_repeat Simple_repeat 1 37 0 3413 118 30 6 chr9 59267251 59267672 -58594955 + L1MA9 LINE L1 5775 6308 -4 206 158 26 0 chr9 59267735 59267773 -58594854 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 543 276 8 102 chr9 59267826 59268080 -58594547 + MIR SINE MIR 7 236 -26 197 0 0 67 chr9 59269557 59269587 -58593040 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 294 336 186 0 chr9 59269708 59269821 -58592806 + L2 LINE L2 3137 3270 -2 185 359 26 13 chr9 59270038 59270116 -58592511 - MIR SINE MIR -85 123 45 267 31 0 0 chr9 59271253 59271285 -58591342 + (CA)n Simple_repeat Simple_repeat 2 33 0 327 308 101 2 chr9 59271581 59271739 -58590888 - MIR3 SINE MIR -63 145 13 366 264 0 23 chr9 59271789 59271876 -58590751 + L2 LINE L2 3171 3255 -17 309 360 81 15 chr9 59272606 59272803 -58589824 + MIR SINE MIR 29 238 -24 251 351 64 0 chr9 59272854 59272948 -58589679 + MIR SINE MIR 52 151 -111 372 200 12 12 chr9 59274658 59274743 -58587884 - MLT1K LTR MaLR -2 586 502 317 389 6 13 chr9 59275583 59275740 -58586887 + L1MEd LINE L1 3 158 -5961 1787 124 29 22 chr9 59275743 59276057 -58586570 - Tigger3(Golem) DNA MER2_type -1 3028 2713 2429 61 0 19 chr9 59276580 59276891 -58585736 - AluY SINE Alu -6 305 1 30 0 0 0 chr9 59276937 59276967 -58585660 + AT_rich Low_complexity Low_complexity 1 30 0 273 128 0 0 chr9 59276978 59277017 -58585610 - L1PA10 LINE L1 -12 6156 6118 2155 125 0 0 chr9 59277017 59277314 -58585313 - AluSc SINE Alu -12 297 1 3986 194 35 46 chr9 59277315 59277589 -58585038 + L1MB3 LINE L1 4527 4802 -1381 2201 98 11 0 chr9 59277589 59277865 -58584762 + AluSg SINE Alu 24 302 -8 3986 194 35 46 chr9 59277865 59279277 -58583350 + L1MB3 LINE L1 4802 6181 -2 1402 222 49 22 chr9 59279773 59280179 -58582448 - L1MCb LINE L1 -5320 725 309 1732 148 10 41 chr9 59280261 59280581 -58582046 + AluJo SINE Alu 1 311 0 507 85 37 0 chr9 59280653 59280735 -58581892 - LTR56 LTR ERV1 -123 322 238 2544 78 0 0 chr9 59280735 59281043 -58581584 + AluY SINE Alu 1 308 -3 1687 203 8 16 chr9 59281043 59281412 -58581215 - MER44D DNA MER2_type -184 421 1 249 324 0 14 chr9 59281475 59281549 -58581078 - MIR SINE MIR -103 105 33 1260 167 62 22 chr9 59281685 59281960 -58580667 - L1MC1 LINE L1 -2 6331 6046 658 101 5 2 chr9 59281978 59282100 -58580527 - L1MC1 LINE L1 -398 5935 5812 2540 141 47 12 chr9 59282174 59282662 -58579965 - L1MA9 LINE L1 -21 6291 5787 904 153 31 18 chr9 59282711 59282934 -58579693 - L1MC1 LINE L1 -745 5401 5176 2070 149 84 3 chr9 59283442 59283783 -58578844 + MLT2D LTR ERVL 1 378 -36 192 40 0 0 chr9 59283783 59283808 -58578819 + (CA)n Simple_repeat Simple_repeat 2 26 0 2070 149 84 3 chr9 59283808 59283849 -58578778 + MLT2D LTR ERVL 378 414 0 192 152 0 0 chr9 59283861 59283894 -58578733 + (TATATG)n Simple_repeat Simple_repeat 3 35 0 * 491 136 0 11 chr9 59283893 59283981 -58578646 + (CA)n Simple_repeat Simple_repeat 2 88 0 419 128 12 68 chr9 59284022 59284371 -58578256 + (TA)n Simple_repeat Simple_repeat 1 329 0 223 231 22 44 chr9 59284377 59284468 -58578159 + (TATATG)n Simple_repeat Simple_repeat 2 90 0 384 163 39 28 chr9 59284468 59284646 -58577981 + (TA)n Simple_repeat Simple_repeat 1 180 0 1996 114 33 112 chr9 59284875 59284934 -58577693 + L1PA15 LINE L1 5771 5833 -332 1134 119 6 23 chr9 59284934 59285242 -58577385 + AluSq SINE Alu 1 305 0 1996 114 33 112 chr9 59285242 59285602 -58577025 + L1PA15 LINE L1 5833 6158 -7 549 283 199 40 chr9 59286714 59287225 -58575402 - L2 LINE L2 -3 3310 2709 731 276 16 41 chr9 59287841 59288084 -58574543 + MIR SINE MIR 26 262 0 237 315 17 55 chr9 59288068 59288192 -58574435 - MIR SINE MIR -63 145 42 * 1257 195 87 3 chr9 59288314 59288746 -58573881 - Charlie1b DNA MER1_type -24 499 1 194 306 48 16 chr9 59289518 59289580 -58573047 - L2 LINE L2 0 3272 3209 1745 142 9 71 chr9 59290746 59291070 -58571557 + AluJb SINE Alu 1 304 -8 30 0 0 0 chr9 59291283 59291313 -58571314 + AT_rich Low_complexity Low_complexity 1 30 0 5538 42 34 3 chr9 59291313 59292047 -58570580 - L1PA5 LINE L1 -8 6146 5390 23 0 0 0 chr9 59292211 59292234 -58570393 + AT_rich Low_complexity Low_complexity 1 23 0 25 51 0 0 chr9 59294677 59294716 -58567911 + AT_rich Low_complexity Low_complexity 1 39 0 24 67 0 0 chr9 59294947 59294992 -58567635 + AT_rich Low_complexity Low_complexity 1 45 0 2193 95 0 17 chr9 59295866 59296161 -58566466 + AluY SINE Alu 1 290 -21 180 0 0 0 chr9 59296161 59296181 -58566446 + (TA)n Simple_repeat Simple_repeat 2 21 0 183 42 0 0 chr9 59296682 59296706 -58565921 + (TTTTTG)n Simple_repeat Simple_repeat 3 26 0 325 278 195 39 chr9 59296879 59297084 -58565543 + MIR SINE MIR 20 256 -6 229 288 63 91 chr9 59297581 59297772 -58564855 + MIR3 SINE MIR 4 181 -68 466 278 32 0 chr9 59297857 59297983 -58564644 + MER5B DNA MER1_type 1 130 -48 214 304 0 0 chr9 59299303 59299372 -58563255 + CT-rich Low_complexity Low_complexity 1 69 0 230 280 40 13 chr9 59301192 59301267 -58561360 - MER5B DNA MER1_type -101 77 1 400 283 255 14 chr9 59301283 59301428 -58561199 + MER5A DNA MER1_type 10 189 0 331 343 77 14 chr9 59301428 59301571 -58561056 - MIR3 SINE MIR -37 171 20 252 0 0 0 chr9 59301842 59301870 -58560757 + (TG)n Simple_repeat Simple_repeat 2 29 0 1018 127 0 0 chr9 59301870 59302012 -58560615 - AluSg/x SINE Alu -34 278 137 24 0 0 0 chr9 59302062 59302086 -58560541 + AT_rich Low_complexity Low_complexity 1 24 0 604 324 38 25 chr9 59303143 59303461 -58559166 - MER102b DNA MER1_type -16 325 4 363 295 107 0 chr9 59303608 59303720 -58558907 - L2 LINE L2 -36 3236 3113 229 355 16 51 chr9 59304012 59304212 -58558415 - MIR SINE MIR -56 206 15 2505 74 0 3 chr9 59304621 59304933 -58557694 + AluY SINE Alu 1 311 0 354 345 55 36 chr9 59304997 59305217 -58557410 - MIR SINE MIR -11 251 28 309 253 44 11 chr9 59305882 59305973 -58556654 - L2 LINE L2 0 3313 3220 23 33 0 0 chr9 59306068 59306098 -58556529 + AT_rich Low_complexity Low_complexity 1 30 0 1384 110 0 6 chr9 59306189 59306371 -58556256 - AluSg/x SINE Alu -12 300 120 1615 174 38 7 chr9 59307067 59307360 -58555267 - AluJo SINE Alu -9 303 2 401 220 10 10 chr9 59308031 59308131 -58554496 + MER103 DNA DNA 1 100 -66 5987 92 7 7 chr9 59308291 59308526 -58554101 - L1PA16 LINE L1 -8 7596 7362 1465 124 5 0 chr9 59308526 59308744 -58553883 - AluY SINE Alu -2 309 91 5987 92 7 7 chr9 59308744 59309877 -58552750 - L1PA16 LINE L1 -241 7363 6225 5318 205 15 121 chr9 59309877 59310971 -58551656 - L1PA16 LINE L1 -2043 5541 4333 254 211 0 0 chr9 59310971 59311023 -58551604 + LTR30 LTR ERV1 1 52 -670 5318 205 15 121 chr9 59311023 59311289 -58551338 - L1PA16 LINE L1 -3251 4333 4040 297 233 11 0 chr9 59311289 59311379 -58551248 + LTR30 LTR ERV1 552 642 -80 5318 205 15 121 chr9 59311379 59312287 -58550340 - L1PA16 LINE L1 -3544 4040 3848 1997 132 7 26 chr9 59312287 59312597 -58550030 - AluSg SINE Alu -6 304 1 5318 205 15 121 chr9 59312597 59314038 -58548589 - L1PA16 LINE L1 -3736 3848 2256 434 318 7 0 chr9 59314760 59314911 -58547716 - L1PA16 LINE L1 -5276 2298 2147 997 356 20 27 chr9 59314935 59315525 -58547102 - L1PA16 LINE L1 -6200 1374 789 209 263 128 60 chr9 59316118 59316251 -58546376 + L3 LINE CR1 487 628 -949 923 146 0 150 chr9 59316764 59317010 -58545617 - MER3 DNA MER1_type 0 209 1 2361 81 10 0 chr9 59317213 59317509 -58545118 - AluY SINE Alu -12 299 1 1780 142 13 25 chr9 59317519 59317836 -58544791 - L1PA15 LINE L1 0 6165 5853 291 28 0 0 chr9 59319234 59319270 -58543357 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 188 214 8 199 chr9 59319460 59319591 -58543036 - L2 LINE L2 -160 3112 3007 6685 148 16 35 chr9 59320085 59321339 -58541288 + Tigger3b DNA MER2_type 1 1230 -1 1214 210 94 86 chr9 59322852 59322971 -58539656 + MLT1D LTR MaLR 1 118 -387 2286 94 0 10 chr9 59322971 59323269 -58539358 - AluY SINE Alu -16 295 1 1214 210 94 86 chr9 59323269 59323650 -58538977 + MLT1D LTR MaLR 118 505 0 214 233 23 0 chr9 59324646 59324689 -58537938 - L2 LINE L2 -28 3244 3201 276 268 0 0 chr9 59325444 59325500 -58537127 + L2 LINE L2 3250 3305 -8 503 296 43 55 chr9 59325984 59326237 -58536390 - MIR SINE MIR 0 262 13 254 314 151 25 chr9 59326338 59326497 -58536130 - MIR SINE MIR -76 186 8 346 317 35 14 chr9 59326511 59326656 -58535971 - MIR SINE MIR -15 247 100 948 189 57 0 chr9 59327084 59327259 -58535368 - MER5A DNA MER1_type -1 188 4 371 243 28 65 chr9 59330787 59330894 -58531733 + MER91C DNA MER1_type 2 104 -36 1770 65 0 5 chr9 59331714 59331954 -58530673 + AluY SINE Alu 66 304 0 247 282 124 34 chr9 59332390 59332652 -58529975 - LTR16C LTR ERVL -177 314 6 326 372 41 56 chr9 59332887 59333228 -58529399 - L2 LINE L2 -18 3254 2919 283 152 15 15 chr9 59333326 59333392 -58529235 + (TA)n Simple_repeat Simple_repeat 1 66 0 185 187 133 40 chr9 59333545 59333620 -58529007 + L3 LINE CR1 1058 1139 -438 247 235 17 25 chr9 59334078 59334197 -58528430 - HAL1b LINE L1 -21 1327 1210 333 244 82 69 chr9 59334228 59334427 -58528200 - HAL1b LINE L1 -288 1060 854 2486 77 3 3 chr9 59334427 59334738 -58527889 + AluY SINE Alu 1 311 0 333 244 82 69 chr9 59334738 59334857 -58527770 - HAL1b LINE L1 -494 854 738 1060 160 0 40 chr9 59334948 59335148 -58527479 + MER3 DNA MER1_type 2 193 -16 352 166 276 21 chr9 59335243 59335360 -58527267 - HAL1b LINE L1 -849 499 373 207 0 0 0 chr9 59335355 59335378 -58527249 + (T)n Simple_repeat Simple_repeat 1 23 0 * 373 277 80 0 chr9 59335553 59335665 -58526962 - MIR SINE MIR -102 160 40 1744 180 3 13 chr9 59335801 59336107 -58526520 - AluJb SINE Alu -9 303 1 2304 88 0 10 chr9 59336164 59336472 -58526155 + AluSx SINE Alu 1 305 -7 2351 103 0 0 chr9 59336757 59337068 -58525559 - AluSp SINE Alu -2 311 1 387 89 0 0 chr9 59337841 59337897 -58524730 + (TG)n Simple_repeat Simple_repeat 2 57 0 376 241 71 45 chr9 59338584 59338696 -58523931 - L2 LINE L2 -19 3294 3180 329 330 25 0 chr9 59338820 59338938 -58523689 - MIR SINE MIR -56 206 86 6342 162 20 3 chr9 59338988 59340127 -58522500 + L1MC1 LINE L1 5175 6333 0 208 368 21 67 chr9 59341300 59341493 -58521134 + MIR3 SINE MIR 22 205 -3 2376 84 0 3 chr9 59341693 59341992 -58520635 + AluY SINE Alu 1 298 -13 227 238 12 71 chr9 59342004 59342088 -58520539 - MIR SINE MIR -73 189 111 310 291 137 8 chr9 59342137 59342254 -58520373 + MIR SINE MIR 23 154 -108 1586 146 90 31 chr9 59342327 59342615 -58520012 + AluJo SINE Alu 1 305 -7 235 291 0 0 chr9 59343187 59343242 -58519385 + (CTGGGG)n Simple_repeat Simple_repeat 6 60 0 203 317 134 12 chr9 59344353 59344435 -58518192 + MIR SINE MIR 36 127 -81 771 282 69 27 chr9 59344806 59345139 -58517488 - MLT1H LTR MaLR -191 358 12 864 258 16 0 chr9 59345326 59345512 -58517115 + MER5A DNA MER1_type 1 189 0 23 54 0 0 chr9 59346153 59346190 -58516437 + AT_rich Low_complexity Low_complexity 1 37 0 198 71 0 0 chr9 59346197 59346225 -58516402 + (TATAA)n Simple_repeat Simple_repeat 5 32 0 257 342 56 41 chr9 59347009 59347205 -58515422 + L2 LINE L2 2451 2649 -665 939 233 208 33 chr9 59347405 59347833 -58514794 + Charlie7 DNA MER1_type 138 689 -1923 230 246 0 43 chr9 59349703 59349772 -58512855 + L1MCa LINE L1 2002 2067 -4359 2295 109 10 0 chr9 59351299 59351602 -58511025 + AluSx SINE Alu 1 306 -6 2627 153 20 46 chr9 59352349 59352893 -58509734 - L1MB7 LINE L1 0 6184 5655 321 150 0 8 chr9 59352893 59352943 -58509684 + MER58A DNA MER1_type 46 88 -136 1417 249 196 14 chr9 59353157 59353595 -58509032 - L1M4b LINE L1 -6308 551 34 11219 204 58 31 chr9 59353801 59356430 -58506197 - L1MA9 LINE L1 0 7731 5175 2410 100 0 0 chr9 59356430 59356740 -58505887 - AluY SINE Alu 0 311 2 11219 204 58 31 chr9 59356740 59356870 -58505757 - L1MA9 LINE L1 -2556 5175 5050 1949 146 0 13 chr9 59356870 59357171 -58505456 - AluSx SINE Alu -15 297 1 11219 204 58 31 chr9 59357171 59358628 -58503999 - L1MA9 LINE L1 -2681 5050 3634 2320 88 7 0 chr9 59358628 59358922 -58503705 - AluY SINE Alu -15 296 1 11219 204 58 31 chr9 59358922 59359079 -58503548 - L1MA9 LINE L1 -4097 3634 3483 1527 219 3 7 chr9 59359079 59359376 -58503251 - AluJo SINE Alu -16 296 1 11219 204 58 31 chr9 59359376 59359481 -58503146 - L1MA9 LINE L1 -4248 3483 2969 210 306 118 0 chr9 59360111 59360196 -58502431 - MIR SINE MIR -148 114 20 327 222 28 0 chr9 59360576 59360648 -58501979 + MIR SINE MIR 189 262 0 238 248 110 35 chr9 59360730 59360875 -58501752 + HAL1b LINE L1 761 916 -432 1256 261 86 29 chr9 59361303 59361323 -58501304 - MLT1H LTR MaLR -37 512 495 2057 106 40 13 chr9 59361323 59361625 -58501002 - AluSg SINE Alu 0 310 1 1256 261 86 29 chr9 59361625 59362082 -58500545 - MLT1H LTR MaLR -54 495 8 982 296 91 37 chr9 59362476 59363156 -58499471 - HAL1 LINE L1 -698 1809 1093 * 1974 196 6 0 chr9 59363150 59363507 -58499120 - L1PA16 LINE L1 -7 6159 5801 21 0 0 0 chr9 59364516 59364537 -58498090 + AT_rich Low_complexity Low_complexity 1 21 0 391 333 76 30 chr9 59364841 59365039 -58497588 - L2 LINE L2 -826 2488 2282 844 125 56 14 chr9 59365039 59365183 -58497444 - Tigger7 DNA MER2_type 0 2487 2338 4727 109 306 123 chr9 59365186 59366618 -58496009 - pTR5 LTR ERV1 0 2438 745 353 42 0 0 chr9 59366618 59366666 -58495961 - Tigger7 DNA MER2_type -144 2343 2296 2383 87 7 0 chr9 59366666 59366964 -58495663 + AluY SINE Alu 1 300 -11 493 113 0 24 chr9 59367197 59367291 -58495336 - HSAT5 Satellite Satellite 0 91 1 2043 125 13 3 chr9 59374257 59374562 -58488065 + AluSx SINE Alu 1 308 -4 369 0 0 0 chr9 59374563 59374604 -58488023 + (CA)n Simple_repeat Simple_repeat 2 42 0 224 221 0 4 chr9 59376071 59376130 -58486497 + MIR SINE MIR 102 160 -48 416 309 7 7 chr9 59376197 59376336 -58486291 - MIR SINE MIR 0 262 124 5987 153 10 2 chr9 59376379 59377871 -58484756 - L1PB3 LINE L1 0 6154 4650 287 262 150 86 chr9 59379678 59379911 -58482716 + MLT1H LTR MaLR 302 549 0 2228 88 0 14 chr9 59379924 59380221 -58482406 - AluY SINE Alu -18 293 1 2440 75 0 0 chr9 59380265 59380573 -58482054 - AluY SINE Alu -3 308 1 413 315 94 30 chr9 59381880 59382083 -58480544 + MIR SINE MIR 34 249 -13 201 74 0 0 chr9 59383426 59383453 -58479174 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2539 59 0 0 chr9 59383490 59383795 -58478832 - AluY SINE Alu -6 305 1 614 298 135 52 chr9 59384428 59384925 -58477702 - MLT1F LTR MaLR -4 538 1 466 294 24 0 chr9 59385195 59385321 -58477306 - MER94 DNA DNA -5 129 1 226 227 45 15 chr9 59385340 59385406 -58477221 - LTR67 LTR ERVL -488 69 2 284 273 15 0 chr9 59389766 59389832 -58472795 + L2 LINE L2 3241 3307 -6 3250 244 29 17 chr9 59389950 59390778 -58471849 + L1MEc LINE L1 37 874 -5522 2368 256 54 37 chr9 59391419 59392759 -58469868 + L1M4 LINE L1 779 2096 -4550 182 61 82 0 chr9 59392821 59392870 -58469757 + (TA)n Simple_repeat Simple_repeat 2 54 0 284 221 178 31 chr9 59392881 59393044 -58469583 + L1M4 LINE L1 2319 2505 -4320 387 200 52 78 chr9 59393082 59393197 -58469430 + L1MEc LINE L1 36 147 -6249 550 277 3 0 chr9 59393200 59393375 -58469252 + L1MA10 LINE L1 5994 6330 -4 274 333 81 0 chr9 59394203 59394302 -58468325 - L2 LINE L2 -2 3311 3205 2217 174 52 10 chr9 59395780 59396182 -58466445 + MSTB LTR MaLR 1 419 -7 1976 118 3 71 chr9 59396325 59396671 -58465956 + AluSx SINE Alu 1 324 0 303 252 87 39 chr9 59396722 59396825 -58465802 - MER91C DNA MER1_type -1 139 32 273 374 57 23 chr9 59398525 59398787 -58463840 + L2 LINE L2 2231 2501 -813 926 271 151 38 chr9 59399835 59400247 -58462380 + L2 LINE L2 2476 2840 -473 1921 122 4 0 chr9 59400247 59400518 -58462109 - AluY SINE Alu -3 308 37 926 271 151 38 chr9 59400518 59400849 -58461778 + L2 LINE L2 2840 3297 -16 358 281 205 36 chr9 59400940 59401243 -58461384 - L2 LINE L2 -4 3309 2956 216 0 0 0 chr9 59401369 59401393 -58461234 + (TTTAA)n Simple_repeat Simple_repeat 2 25 0 3536 33 7 0 chr9 59401409 59401838 -58460789 - L1PA7 LINE L1 -7 6147 5716 7051 67 3 3 chr9 59401838 59403225 -58459402 - L1P3 LINE L1 -366 5788 4404 413 230 40 87 chr9 59403463 59403589 -58459038 + MER91B DNA MER1_type 1 120 -70 307 225 28 0 chr9 59403699 59403770 -58458857 + L2 LINE L2 3241 3313 0 5861 120 11 5 chr9 59403913 59405264 -58457363 + L1PA16 LINE L1 4796 6150 -16 2782 142 6 29 chr9 59405329 59405807 -58456820 + MLT1C LTR MaLR 1 467 0 301 303 99 6 chr9 59405816 59405978 -58456649 - L2 LINE L2 -220 3093 2917 181 338 159 13 chr9 59406326 59406477 -58456150 - MIR3 SINE MIR -20 188 16 809 221 0 122 chr9 59407138 59407259 -58455368 + MIR SINE MIR 7 141 -121 1899 106 0 87 chr9 59407259 59407570 -58455057 + AluSg SINE Alu 1 284 -26 270 81 0 0 chr9 59407570 59407607 -58455020 + (CA)n Simple_repeat Simple_repeat 2 38 0 809 221 0 122 chr9 59407607 59407746 -58454881 + MIR SINE MIR 139 236 -26 23 0 0 0 chr9 59408438 59408461 -58454166 + AT_rich Low_complexity Low_complexity 1 23 0 2458 4 0 0 chr9 59408539 59408803 -58453824 + AluYa5 SINE Alu 35 298 -13 396 0 0 0 chr9 59409024 59409068 -58453559 + (TG)n Simple_repeat Simple_repeat 2 45 0 2216 97 3 16 chr9 59410906 59411217 -58451410 - AluSc SINE Alu -2 307 1 445 191 198 45 chr9 59411465 59411622 -58451005 + MER5A DNA MER1_type 9 189 0 2463 160 22 7 chr9 59411721 59412171 -58450456 - MSTB2 LTR MaLR 0 457 1 397 133 91 88 chr9 59413027 59413165 -58449462 - L1MD3 LINE L1 0 8042 7900 201 233 0 0 chr9 59413176 59413219 -58449408 + CT-rich Low_complexity Low_complexity 2 44 0 273 98 0 0 chr9 59413220 59413261 -58449366 + (TG)n Simple_repeat Simple_repeat 2 42 0 2314 241 91 68 chr9 59413274 59413692 -58448935 - L1MC4 LINE L1 -134 7908 7501 2581 62 0 0 chr9 59413692 59414000 -58448627 + AluY SINE Alu 1 308 -3 2314 241 91 68 chr9 59414000 59414723 -58447904 - L1MC4 LINE L1 -541 7501 6741 5998 158 30 8 chr9 59414763 59415884 -58446743 - L1MC1 LINE L1 -5 7123 5974 2402 85 0 0 chr9 59415903 59416209 -58446418 - AluY SINE Alu -5 306 1 677 227 125 48 chr9 59416211 59416524 -58446103 - L1MC1 LINE L1 -2377 4564 4228 3081 238 68 25 chr9 59416527 59416691 -58445936 - L1MC1 LINE L1 -2954 3987 3831 1974 101 0 4 chr9 59416691 59416949 -58445678 + AluSc SINE Alu 39 295 -14 3081 238 68 25 chr9 59416949 59418245 -58444382 - L1MC1 LINE L1 -3110 3831 2491 371 211 11 0 chr9 59418246 59418341 -58444286 + (TA)n Simple_repeat Simple_repeat 1 96 0 821 191 0 0 chr9 59418374 59418521 -58444106 - FRAM SINE Alu -10 166 20 1748 257 93 44 chr9 59418578 59419272 -58443355 - L1MC1 LINE L1 -4729 2212 1554 2069 117 10 26 chr9 59419272 59419581 -58443046 + AluSx SINE Alu 1 304 -8 1748 257 93 44 chr9 59419581 59420218 -58442409 - L1MC1 LINE L1 -5387 1554 791 264 325 18 31 chr9 59420652 59420815 -58441812 - L1MC1 LINE L1 -5883 539 379 24 53 0 0 chr9 59421281 59421319 -58441308 + AT_rich Low_complexity Low_complexity 1 38 0 1154 191 0 32 chr9 59421451 59421671 -58440956 + AluJo SINE Alu 83 295 -17 209 284 211 11 chr9 59421708 59421803 -58440824 + MIR3 SINE MIR 10 123 -85 3245 174 4 2 chr9 59422921 59423461 -58439166 + MER44D DNA MER2_type 8 603 -2 322 295 42 58 chr9 59424330 59424520 -58438107 - MER5A DNA MER1_type -2 187 1 358 335 77 41 chr9 59425831 59426025 -58436602 + L2 LINE L2 3072 3272 0 896 289 153 18 chr9 59426215 59427004 -58435623 - HAL1 LINE L1 -836 1671 776 476 224 33 46 chr9 59427603 59427755 -58434872 - MER103 DNA DNA -14 152 3 21 0 0 0 chr9 59427859 59427880 -58434747 + AT_rich Low_complexity Low_complexity 1 21 0 241 204 11 32 chr9 59428330 59428423 -58434204 + CT-rich Low_complexity Low_complexity 6 96 0 467 243 114 88 chr9 59429025 59429297 -58433330 - L2 LINE L2 0 3313 3035 918 341 0 8 chr9 59429338 59429605 -58433022 - L2 LINE L2 -243 3070 2806 1771 73 4 4 chr9 59429620 59429854 -58432773 + THE1B-int LTR MaLR 1347 1580 0 2631 102 3 3 chr9 59429854 59430218 -58432409 + THE1B LTR MaLR 1 364 0 25 31 0 0 chr9 59430887 59430919 -58431708 + AT_rich Low_complexity Low_complexity 1 32 0 1926 175 15 3 chr9 59430919 59431261 -58431366 - MER7A DNA MER2_type -2 344 1 4049 136 67 8 chr9 59431326 59431997 -58430630 - MER50 LTR ERV1 -23 711 1 3038 190 49 32 chr9 59432203 59432918 -58429709 + LTR8A LTR ERV1 1 727 0 4390 161 45 14 chr9 59433073 59433339 -58429288 + LTR1B LTR ERV1 1 257 -569 2101 116 21 43 chr9 59433339 59433711 -58428916 - THE1B LTR MaLR 0 364 1 4390 161 45 14 chr9 59433711 59434243 -58428384 + LTR1B LTR ERV1 257 824 -2 284 289 11 11 chr9 59434344 59434434 -58428193 - MER46C DNA MER2_type 0 338 249 1697 177 60 66 chr9 59434435 59434899 -58427728 - MER31B LTR ERV1 0 661 1 355 201 101 15 chr9 59434899 59435065 -58427562 - MER46C DNA MER2_type -87 251 19 1864 165 71 51 chr9 59437205 59437672 -58424955 - MER31A LTR ERV1 -9 476 1 203 184 0 0 chr9 59438062 59438100 -58424527 + T-rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr9 59438576 59438604 -58424023 + AT_rich Low_complexity Low_complexity 1 28 0 352 250 100 10 chr9 59438953 59439053 -58423574 + L2 LINE L2 3201 3309 -4 433 146 10 21 chr9 59439252 59439348 -58423279 - MER53 DNA DNA -94 95 1 499 235 96 6 chr9 59439558 59439724 -58422903 + LTR16A1 LTR ERVL 275 455 -2 996 194 47 51 chr9 59440267 59440722 -58421905 - MLT1F1 LTR MaLR -10 557 17 2105 104 4 0 chr9 59440728 59441046 -58421581 - AluSg SINE Alu 0 319 1 654 262 30 6 chr9 59441290 59441458 -58421169 + MER5B DNA MER1_type 1 172 -6 794 208 84 84 chr9 59441499 59441697 -58420930 - LTR16C LTR ERVL 0 491 291 2193 137 3 0 chr9 59441697 59442004 -58420623 - AluSg SINE Alu -2 308 1 794 208 84 84 chr9 59442004 59442079 -58420548 - LTR16C LTR ERVL -199 292 218 226 312 43 51 chr9 59442246 59442384 -58420243 + MIR SINE MIR 118 254 -8 464 303 96 35 chr9 59442567 59442765 -58419862 + MIR SINE MIR 21 230 -32 236 268 170 18 chr9 59443083 59443195 -58419432 - MIR SINE MIR -4 258 130 648 182 0 0 chr9 59443196 59443306 -58419321 + FRAM SINE Alu 62 171 -5 1598 239 106 33 chr9 59443322 59444319 -58418308 - L1MCc LINE L1 -4887 1536 822 237 33 0 0 chr9 59444564 59444594 -58418033 + (TG)n Simple_repeat Simple_repeat 1 30 0 600 275 80 37 chr9 59444603 59444952 -58417675 - L1MCc LINE L1 -6026 397 34 227 304 54 0 chr9 59444999 59445055 -58417572 - MIR SINE MIR -191 71 13 545 233 191 23 chr9 59445408 59445623 -58417004 - MIR SINE MIR 0 262 12 846 225 12 16 chr9 59446940 59447189 -58415438 - L1 LINE L1 -796 6371 6124 * 2404 240 50 87 chr9 59447186 59449337 -58413290 - L1 LINE L1 -3786 3381 1618 3430 208 69 35 chr9 59450251 59450701 -58411926 + L1MB8 LINE L1 4322 4755 -1419 2486 85 0 0 chr9 59450701 59451006 -58411621 + AluY SINE Alu 1 305 -6 3430 208 69 35 chr9 59451006 59451700 -58410927 + L1MB8 LINE L1 4755 5494 -680 1339 132 5 15 chr9 59451714 59451911 -58410716 + AluSx SINE Alu 1 195 -117 2602 211 48 22 chr9 59451919 59452315 -58410312 + L1MB8 LINE L1 5495 5916 -262 2165 171 43 10 chr9 59452315 59452729 -58409898 + MSTA LTR MaLR 1 428 0 2602 211 48 22 chr9 59452729 59452999 -58409628 + L1MB8 LINE L1 5916 6178 0 2745 196 8 10 chr9 59453001 59453597 -58409030 + L1MB7 LINE L1 5320 5914 -270 1188 155 0 0 chr9 59453597 59453771 -58408856 - AluSg/x SINE Alu -5 307 134 2151 131 3 6 chr9 59453771 59454084 -58408543 - AluSx SINE Alu 0 312 1 960 216 30 0 chr9 59454103 59454335 -58408292 + L1MB7 LINE L1 5920 6158 -26 29085 115 12 58 chr9 59454710 59457351 -58405276 + L1PA7 LINE L1 2 2763 -3391 194 0 39 0 chr9 59457351 59457377 -58405250 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 29085 115 12 58 chr9 59457377 59461195 -58401432 + L1PA7 LINE L1 2763 6152 -2 1174 174 8 0 chr9 59461222 59461464 -58401163 + L1MA2 LINE L1 6057 6300 -4 2369 153 45 6 chr9 59461481 59461952 -58400675 + L1MB2 LINE L1 5657 6145 -26 384 260 55 72 chr9 59461983 59462164 -58400463 - MER20B DNA MER1_type -6 213 36 4128 166 39 4 chr9 59462558 59463386 -58399241 + L1MB8 LINE L1 5317 6173 -5 359 300 180 0 chr9 59464102 59464252 -58398375 + MER5A DNA MER1_type 10 186 -3 183 80 0 0 chr9 59464349 59464374 -58398253 + (TG)n Simple_repeat Simple_repeat 2 26 0 334 288 29 14 chr9 59464619 59464758 -58397869 + MLT1K LTR MaLR 448 588 0 6473 92 26 1 chr9 59464857 59466453 -58396174 - L1PA11 LINE L1 0 6174 4575 2994 232 48 22 chr9 59466473 59467258 -58395369 - L1PA12 LINE L1 -6194 1387 582 470 302 110 30 chr9 59467450 59467950 -58394677 + HAL1 LINE L1 1674 2213 -294 1157 203 53 49 chr9 59467976 59468242 -58394385 + AluJo SINE Alu 9 275 -37 10783 204 60 14 chr9 59468317 59470234 -58392393 + L1M2 LINE L1 1 1830 -5019 1532 178 178 6 chr9 59470234 59470599 -58392028 - MSTA LTR MaLR 0 428 1 10783 204 60 14 chr9 59470599 59470744 -58391883 + L1M2 LINE L1 1830 1967 -4882 2125 110 7 0 chr9 59470744 59471053 -58391574 + AluSp SINE Alu 2 312 0 10783 204 60 14 chr9 59471053 59471389 -58391238 + L1M2 LINE L1 1967 2510 -4339 3944 87 19 2 chr9 59471428 59471969 -58390658 + L1PA8A LINE L1 5564 6113 -18 256 131 33 33 chr9 59472720 59472781 -58389846 + L1MA2 LINE L1 5254 5314 -991 4334 133 11 16 chr9 59472820 59473609 -58389018 + L1MA2 LINE L1 5305 6089 -215 * 11317 128 8 27 chr9 59473603 59476071 -58386556 + L1P3 LINE L1 1 2468 -3993 573 271 60 18 chr9 59478616 59478782 -58383845 - MIR3 SINE MIR -19 189 17 2365 94 3 10 chr9 59479149 59479456 -58383171 + AluSg SINE Alu 1 305 -5 1816 128 62 0 chr9 59479459 59479733 -58382894 + AluSg SINE Alu 3 293 -17 234 150 0 0 chr9 59479742 59479782 -58382845 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 270 285 105 17 chr9 59480307 59480479 -58382148 + MIR SINE MIR 63 249 -13 1829 157 191 22 chr9 59481171 59481574 -58381053 + MLT2B1 LTR ERVL 1 487 -33 243 0 0 0 chr9 59481574 59481601 -58381026 + (TG)n Simple_repeat Simple_repeat 2 28 0 1829 157 191 22 chr9 59481601 59481642 -58380985 + MLT2B1 LTR ERVL 487 520 0 5018 118 23 5 chr9 59482201 59482968 -58379659 - THE1-int LTR MaLR -336 1244 461 2511 77 0 10 chr9 59482968 59483279 -58379348 - AluY SINE Alu -3 308 1 664 293 44 10 chr9 59483937 59484142 -58378485 + MIR SINE MIR 22 233 -29 363 127 28 28 chr9 59484667 59484738 -58377889 + LTR16C LTR ERVL 421 491 0 234 211 19 0 chr9 59484750 59484802 -58377825 - MER103 DNA DNA -46 120 68 22 0 0 0 chr9 59485133 59485155 -58377472 + AT_rich Low_complexity Low_complexity 1 22 0 2329 104 0 0 chr9 59485982 59486281 -58376346 - AluSg SINE Alu -11 299 1 2402 77 6 13 chr9 59486292 59486603 -58376024 - AluY SINE Alu -2 309 1 22 35 0 0 chr9 59487022 59487051 -58375576 + AT_rich Low_complexity Low_complexity 1 29 0 1510 197 28 18 chr9 59487242 59487526 -58375101 - AluJo SINE Alu -25 287 1 272 275 101 28 chr9 59487834 59487943 -58374684 - L2 LINE L2 -8 3264 3148 446 378 15 15 chr9 59489069 59489328 -58373299 + ERVL LTR ERVL 1394 1652 -4112 233 316 177 22 chr9 59489918 59490414 -58372213 - L1MEd LINE L1 -5279 840 268 965 237 36 19 chr9 59490863 59491136 -58371491 + L1PA12 LINE L1 627 1140 -6441 4184 130 44 1 chr9 59491136 59492160 -58370467 + L1PA11 LINE L1 4575 5642 -532 1299 98 0 0 chr9 59492160 59492341 -58370286 + L1PA11 LINE L1 5991 6173 -1 189 361 12 12 chr9 59493680 59493763 -58368864 - MIR3 SINE MIR -9 199 117 196 333 27 116 chr9 59494031 59494178 -58368449 + MER5A DNA MER1_type 56 189 0 285 51 0 0 chr9 59494393 59494432 -58368195 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 559 308 156 31 chr9 59494507 59495140 -58367487 + L2 LINE L2 2564 3271 -1 403 366 12 19 chr9 59496850 59497011 -58365616 - L1M3c LINE L1 -5981 160 1 1627 199 27 25 chr9 59497011 59497454 -58365173 + L1M4 LINE L1 4322 4765 -1381 2224 102 0 0 chr9 59497461 59497790 -58364837 + AluY SINE Alu 1 329 0 349 190 24 41 chr9 59498165 59498270 -58364357 - MLT1H LTR MaLR -34 515 426 255 284 53 42 chr9 59498303 59498398 -58364229 - MLT1H LTR MaLR -223 326 231 349 262 57 20 chr9 59500113 59500302 -58362325 + MLT1J LTR MaLR 31 289 -302 853 232 76 38 chr9 59500672 59500711 -58361916 - MIR SINE MIR -6 256 220 2478 74 0 0 chr9 59500711 59501022 -58361605 - AluY SINE Alu 0 311 1 853 232 76 38 chr9 59501022 59501205 -58361422 - MIR SINE MIR -42 220 22 1952 100 4 25 chr9 59501205 59501486 -58361141 - AluSc SINE Alu -14 295 21 853 232 76 38 chr9 59501486 59501499 -58361128 - MIR SINE MIR -240 22 11 360 0 0 0 chr9 59502575 59502615 -58360012 + (CA)n Simple_repeat Simple_repeat 2 41 0 2363 19 0 0 chr9 59502836 59503099 -58359528 - AluYa5 SINE Alu -14 297 35 811 221 0 122 chr9 59503891 59504030 -58358597 - MIR SINE MIR -26 236 82 270 81 0 0 chr9 59504030 59504067 -58358560 + (TG)n Simple_repeat Simple_repeat 2 38 0 1908 107 0 84 chr9 59504067 59504377 -58358250 - AluSg SINE Alu -26 284 1 811 221 0 122 chr9 59504377 59504498 -58358129 - MIR SINE MIR -178 84 7 185 338 159 13 chr9 59505159 59505310 -58357317 + MIR3 SINE MIR 16 188 -20 270 301 52 67 chr9 59505622 59505815 -58356812 + L2 LINE L2 2893 3082 -231 630 252 11 70 chr9 59505830 59506100 -58356527 - MLT1C LTR MaLR 0 467 214 476 361 66 35 chr9 59506242 59506669 -58355958 + L2 LINE L2 2853 3292 -21 351 370 36 36 chr9 59506718 59507026 -58355601 + L1M4 LINE L1 3334 3641 -2505 299 333 9 9 chr9 59507198 59507423 -58355204 + L1M4 LINE L1 3712 3936 -2210 534 233 38 15 chr9 59507559 59507692 -58354935 + MIR SINE MIR 97 232 -30 32 57 0 0 chr9 59508791 59508844 -58353783 + AT_rich Low_complexity Low_complexity 1 53 0 21 0 0 0 chr9 59508906 59508927 -58353700 + AT_rich Low_complexity Low_complexity 1 21 0 941 225 30 56 chr9 59509827 59510129 -58352498 + L1M4b LINE L1 931 1224 -5635 440 256 0 70 chr9 59510364 59510520 -58352107 + L1M4b LINE L1 1205 1349 -5510 * 12894 177 93 98 chr9 59510518 59512728 -58349899 + L1M1 LINE L1 11 2230 -5335 1478 120 39 22 chr9 59512728 59513048 -58349579 + THE1B LTR MaLR 1 346 -9 12894 177 93 98 chr9 59513048 59513148 -58349479 + L1M1 LINE L1 2230 2329 -5236 1455 141 33 74 chr9 59513148 59513418 -58349209 + AluSx SINE Alu 53 311 -1 12894 177 93 98 chr9 59513418 59515145 -58347482 + L1M1 LINE L1 2329 4348 -3217 1592 208 32 48 chr9 59515145 59515587 -58347040 + L1M4b LINE L1 3199 3633 -3324 2400 87 0 0 chr9 59515592 59515891 -58346736 + AluY SINE Alu 1 299 -12 346 245 80 31 chr9 59516000 59516163 -58346464 - L1ME3A LINE L1 -264 5906 5736 246 327 44 18 chr9 59516796 59516909 -58345718 + L2 LINE L2 3193 3308 -5 1732 148 8 8 chr9 59516921 59517213 -58345414 + AluSx SINE Alu 23 314 0 2661 126 9 30 chr9 59517636 59518073 -58344554 - MSTA LTR MaLR 0 428 1 534 242 81 78 chr9 59519219 59519566 -58343061 - HAL1 LINE L1 -36 2471 2124 1477 253 73 32 chr9 59519858 59520538 -58342089 + MER20B DNA MER1_type 42 749 -34 25 51 0 0 chr9 59520605 59520644 -58341983 + AT_rich Low_complexity Low_complexity 1 39 0 1139 275 102 45 chr9 59520648 59521723 -58340904 - HAL1 LINE L1 -533 1974 838 2297 208 21 8 chr9 59521733 59522208 -58340419 - MLT1D LTR MaLR 0 505 25 255 311 25 93 chr9 59522399 59522560 -58340067 - HAL1 LINE L1 -1868 639 490 631 198 0 0 chr9 59522719 59522845 -58339782 + L1M1 LINE L1 1947 2072 -5493 531 190 57 25 chr9 59522983 59523141 -58339486 - L1M2a LINE L1 -6993 175 13 405 242 92 26 chr9 59524306 59524459 -58338168 + MIR SINE MIR 73 235 -27 4708 210 43 19 chr9 59524757 59525843 -58336784 - L1PA12 LINE L1 -6469 1112 1 472 300 82 32 chr9 59525884 59526347 -58336280 + HAL1 LINE L1 976 1461 -1046 999 172 154 54 chr9 59527558 59527890 -58334737 - MLT1A1 LTR MaLR 0 365 1 568 125 11 0 chr9 59528762 59528850 -58333777 - AluSg/x SINE Alu -14 298 210 1713 122 8 4 chr9 59528850 59529095 -58333532 - AluSx SINE Alu -66 246 1 226 316 23 75 chr9 59529437 59529520 -58333107 + MIR3 SINE MIR 77 152 -56 2101 136 0 0 chr9 59529520 59529814 -58332813 - AluSx SINE Alu -18 294 1 226 316 23 75 chr9 59529814 59529863 -58332764 + MIR3 SINE MIR 152 202 -6 356 265 34 45 chr9 59531157 59531307 -58331320 + MIR SINE MIR 19 164 -65 221 263 79 26 chr9 59532615 59532691 -58329936 + MIR SINE MIR 64 143 -119 1169 147 35 0 chr9 59532721 59532919 -58329708 - L1PA16 LINE L1 -15 6151 5947 1541 225 107 19 chr9 59533274 59533891 -58328736 - MER69 DNA AcHobo -4 2522 1852 320 228 121 20 chr9 59534194 59534341 -58328286 + MLT1H LTR MaLR 340 501 -48 271 217 32 23 chr9 59534341 59534453 -58328174 - MER58C DNA MER1_type 0 215 106 365 320 24 0 chr9 59534454 59534579 -58328048 - MER58C DNA MER1_type -73 142 15 515 209 20 13 chr9 59534632 59534785 -58327842 - MER69 DNA AcHobo -671 1855 1702 976 249 115 0 chr9 59534858 59535163 -58327464 - MER69 DNA AcHobo -2186 340 1 664 99 18 0 chr9 59536768 59536879 -58325748 + (TCTA)n Simple_repeat Simple_repeat 1 113 0 2234 107 7 3 chr9 59537245 59537544 -58325083 - AluSq SINE Alu -13 300 1 186 233 155 78 chr9 59538004 59538120 -58324507 + MIR SINE MIR 62 186 -76 229 291 0 0 chr9 59538133 59538188 -58324439 + (TATATG)n Simple_repeat Simple_repeat 2 56 0 198 71 0 0 chr9 59538635 59538663 -58323964 + (TTCCC)n Simple_repeat Simple_repeat 3 30 0 183 339 35 17 chr9 59540572 59540687 -58321940 + L3 LINE CR1 1143 1259 -318 234 243 54 14 chr9 59540689 59540763 -58321864 + L3 LINE CR1 1428 1504 -73 1626 133 110 19 chr9 59540769 59541033 -58321594 + AluSx SINE Alu 3 290 -22 413 347 51 23 chr9 59541251 59541427 -58321200 - MIR SINE MIR -62 200 20 422 292 9 9 chr9 59541882 59541995 -58320632 - MER91B DNA MER1_type -56 134 22 483 294 70 35 chr9 59542167 59542395 -58320232 - L2 LINE L2 0 3313 3078 1056 323 35 4 chr9 59542417 59542900 -58319727 + L1MEc LINE L1 511 1008 -5388 324 274 130 18 chr9 59542905 59543148 -58319479 + L1MEc LINE L1 1045 1222 -4983 1530 249 26 40 chr9 59543159 59543628 -58318999 + MLT1C LTR MaLR 6 467 0 1013 220 16 8 chr9 59543718 59543963 -58318664 + L1MC3 LINE L1 6868 7114 -671 1798 245 63 51 chr9 59544035 59544221 -58318406 + L1MEc LINE L1 1632 1814 -4401 2151 122 7 0 chr9 59544221 59544525 -58318102 - AluSq SINE Alu -7 306 1 2130 121 0 3 chr9 59544528 59544817 -58317810 - AluSx SINE Alu -24 288 1 1798 245 63 51 chr9 59544817 59545551 -58317076 + L1MEc LINE L1 1815 2524 -3691 3743 69 10 2 chr9 59545554 59546146 -58316481 - L1PA8 LINE L1 -425 5747 5153 3143 73 5 9 chr9 59546146 59546557 -58316070 + L1PA8 LINE L1 5742 6166 -6 1934 232 101 2 chr9 59546557 59547183 -58315444 + L1MEc LINE L1 2548 3235 -2980 1790 350 19 20 chr9 59547307 59548174 -58314453 - HERV16 LTR ERVL -2068 3696 2831 1499 298 46 24 chr9 59548238 59548893 -58313734 - HERV16 LTR ERVL -4327 669 1 842 270 127 44 chr9 59548899 59549306 -58313321 - LTR16A LTR ERVL -6 444 1 2106 178 49 41 chr9 59550239 59550727 -58311900 + MLT1D LTR MaLR 1 492 -13 181 228 18 53 chr9 59550937 59550994 -58311633 + MER5A DNA MER1_type 111 165 -24 1056 248 90 26 chr9 59551732 59552155 -58310472 + MER113 DNA MER1_type? 6 455 -66 523 204 150 66 chr9 59552644 59552811 -58309816 + MER5A DNA MER1_type 9 189 0 352 261 143 37 chr9 59552909 59552998 -58309629 - MER5B DNA MER1_type 0 178 100 216 0 0 0 chr9 59552998 59553022 -58309605 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 352 261 143 37 chr9 59553022 59553093 -58309534 - MER5B DNA MER1_type -78 100 1 267 128 0 21 chr9 59554001 59554048 -58308579 - MIR SINE MIR -121 141 96 777 258 82 39 chr9 59554049 59554355 -58308272 - MLT1I LTR MaLR 0 409 91 191 309 36 5 chr9 59554458 59554531 -58308096 - MIR SINE MIR -109 99 26 507 131 0 20 chr9 59556913 59557012 -58305615 - L1MA8 LINE L1 -1 6290 6194 191 292 108 69 chr9 59557326 59557456 -58305171 + MIR SINE MIR 16 150 -58 279 314 12 23 chr9 59557981 59558067 -58304560 + MIR SINE MIR 13 97 -165 752 322 44 44 chr9 59558114 59558695 -58303932 - L2 LINE L2 -125 3188 2614 398 269 124 16 chr9 59558636 59558857 -58303770 + MIR SINE MIR 16 262 0 * 289 344 23 30 chr9 59558850 59558981 -58303646 - MIR SINE MIR -108 154 25 * 259 411 8 0 chr9 59559401 59559525 -58303102 - MIR SINE MIR -68 140 16 308 284 20 20 chr9 59559780 59559882 -58302745 + GA-rich Low_complexity Low_complexity 5 106 0 606 258 108 0 chr9 59560357 59560524 -58302103 - MIR SINE MIR -17 245 61 391 221 35 103 chr9 59561626 59561771 -58300856 + MIR3 SINE MIR 26 160 -48 203 347 28 0 chr9 59561827 59561899 -58300728 + MER5A DNA MER1_type 60 133 -56 299 143 141 0 chr9 59562900 59562971 -58299656 + MLT1H LTR MaLR 469 549 0 24 0 0 0 chr9 59563628 59563652 -58298975 + AT_rich Low_complexity Low_complexity 1 24 0 14509 190 22 7 chr9 59563652 59564009 -58298618 - L1PB1 LINE L1 -5 6862 6512 881 53 59 0 chr9 59564009 59564179 -58298448 + (TA)n Simple_repeat Simple_repeat 1 180 0 14509 190 22 7 chr9 59564179 59568497 -58294130 - L1PB1 LINE L1 -355 6512 2070 1805 186 7 0 chr9 59568497 59568804 -58293823 - AluSx SINE Alu -3 309 1 14509 190 22 7 chr9 59568804 59569778 -58292849 - L1PB1 LINE L1 -4797 2070 1113 1045 133 20 15 chr9 59569769 59569972 -58292655 - L1PB1 LINE L1 -6659 204 1 * 1751 115 24 17 chr9 59570442 59570737 -58291890 + L1MB1 LINE L1 5866 6162 -6 275 365 40 40 chr9 59571798 59571924 -58290703 - L2 LINE L2 -6 3266 3141 311 337 43 11 chr9 59572017 59572148 -58290479 + MIR SINE MIR 3 146 -62 609 217 40 116 chr9 59572648 59573001 -58289626 - L1ME3 LINE L1 -9 6153 5826 559 303 70 54 chr9 59573022 59573632 -58288995 - L1M4 LINE L1 -1896 4250 3631 * 671 281 79 24 chr9 59573620 59574201 -58288426 + L1M4 LINE L1 2967 3579 -2567 638 271 39 59 chr9 59574198 59574655 -58287972 - L1MEc LINE L1 -4868 1528 1081 * 3439 157 48 0 chr9 59574802 59575409 -58287218 - L1MC1 LINE L1 0 6333 5698 311 242 33 11 chr9 59576112 59576203 -58286424 - MER103 DNA DNA -54 112 20 675 226 23 102 chr9 59577615 59577881 -58284746 - MLT1H LTR MaLR -2 547 303 911 240 138 0 chr9 59577998 59578244 -58284383 - MLT1H LTR MaLR -258 291 12 226 170 19 38 chr9 59578393 59578446 -58284181 + L2 LINE L2 3180 3231 -82 252 264 14 0 chr9 59580742 59580814 -58281813 + MLT1H LTR MaLR 95 167 -382 299 333 30 15 chr9 59583209 59583341 -58279286 + MIR SINE MIR 21 154 -108 2227 108 10 7 chr9 59583365 59583670 -58278957 + AluSq SINE Alu 1 306 -7 436 213 23 116 chr9 59584348 59584564 -58278063 - L2 LINE L2 -22 3291 3096 2952 193 12 12 chr9 59584570 59585311 -58277316 + L1PA13 LINE L1 1726 2479 -4318 2144 128 3 0 chr9 59585321 59585619 -58277008 - AluSq SINE Alu -14 299 1 2491 103 6 0 chr9 59585797 59586147 -58276480 - L1PA13 LINE L1 -19 6144 5793 317 98 0 0 chr9 59586147 59586191 -58276436 + L1PB3 LINE L1 6103 6153 -1 322 248 44 58 chr9 59586644 59586781 -58275846 - L1MEc LINE L1 -5900 305 171 197 351 91 0 chr9 59586924 59587001 -58275626 - MIR SINE MIR -119 143 60 489 254 29 0 chr9 59587802 59587940 -58274687 + L1ME3A LINE L1 5413 5554 -612 355 142 36 0 chr9 59587951 59588024 -58274603 - L1ME3A LINE L1 -738 5562 5485 678 256 100 55 chr9 59588025 59588334 -58274293 + L1ME3A LINE L1 5561 5883 -287 228 348 13 39 chr9 59588520 59588675 -58273952 + L1ME3A LINE L1 6020 6170 0 261 335 13 39 chr9 59589013 59589168 -58273459 + L1ME3A LINE L1 6020 6170 0 9483 140 50 5 chr9 59589325 59590395 -58272232 + L1PBa LINE L1 61 1082 -5780 1966 97 93 0 chr9 59590395 59590674 -58271953 + AluSx SINE Alu 1 305 -7 9483 140 50 5 chr9 59590674 59593216 -58269411 + L1PBa LINE L1 1082 3919 -2943 180 231 26 0 chr9 59593986 59594025 -58268602 - MER5C DNA MER1_type -284 40 1 1155 58 0 7 chr9 59595076 59595214 -58267413 + AluSq/x SINE Alu 1 137 -176 242 175 0 0 chr9 59596091 59596154 -58266473 + MER69 DNA AcHobo 2377 2439 -87 5566 135 9 0 chr9 59596154 59597221 -58265406 - L1PA16 LINE L1 0 6166 5080 23 33 0 0 chr9 59598358 59598388 -58264239 + AT_rich Low_complexity Low_complexity 1 30 0 3960 74 54 2 chr9 59599204 59599755 -58262872 - LTR19B LTR ERV1 0 580 1 244 310 70 8 chr9 59600819 59600948 -58261679 + MIR SINE MIR 124 260 -2 381 201 7 111 chr9 59602308 59602399 -58260228 - ORSL DNA AcHobo -9 266 194 1784 118 29 4 chr9 59602399 59602679 -58259948 - L1MC1 LINE L1 -9 6324 6038 381 201 7 111 chr9 59602679 59602731 -58259896 - ORSL DNA AcHobo -81 194 138 345 226 11 43 chr9 59602833 59602926 -58259701 - ORSL DNA AcHobo -184 91 2 1125 261 79 5 chr9 59603299 59603667 -58258960 - L1MD2 LINE L1 -362 5997 5603 808 188 0 36 chr9 59603667 59603832 -58258795 + Tigger4(Zombi) DNA MER2_type 2 160 -2571 * 2783 134 48 11 chr9 59603829 59604350 -58258277 + Tigger4(Zombi) DNA MER2_type 2086 2625 -106 3963 257 65 41 chr9 59604350 59606472 -58256155 - L1MD2 LINE L1 -1501 4645 2474 1629 235 18 0 chr9 59606476 59606859 -58255768 - MLT1B LTR MaLR 0 390 1 2004 204 28 30 chr9 59606860 59607296 -58255331 - MLT1B-int LTR MaLR -1 1370 936 326 154 179 0 chr9 59607801 59607879 -58254748 - MER103 DNA DNA -7 159 68 326 269 153 27 chr9 59608024 59608198 -58254429 - MIR SINE MIR -9 253 63 1356 232 20 59 chr9 59609890 59610334 -58252293 - L1ME1 LINE L1 -5 6161 5735 994 209 58 27 chr9 59610334 59610592 -58252035 - MLT1F1 LTR MaLR 0 567 302 282 282 8 77 chr9 59611091 59611208 -58251419 + L2 LINE L2 3190 3298 -15 * 284 294 106 9 chr9 59611205 59611342 -58251285 - MIR SINE MIR -56 206 57 180 152 0 0 chr9 59612027 59612060 -58250567 + (CA)n Simple_repeat Simple_repeat 1 33 0 1505 164 70 10 chr9 59612122 59612420 -58250207 + MER7A DNA MER2_type 1 314 -32 2193 179 31 12 chr9 59612441 59612859 -58249768 + MSTB LTR MaLR 1 426 0 1932 176 51 11 chr9 59613802 59614177 -58248450 + MLT1B LTR MaLR 1 390 0 1978 122 0 35 chr9 59614286 59614598 -58248029 + AluSx SINE Alu 5 305 -7 250 283 11 65 chr9 59614667 59614759 -58247868 - L2 LINE L2 0 3313 3227 482 298 27 37 chr9 59615135 59615323 -58247304 + MIR SINE MIR 6 191 -71 34 24 0 0 chr9 59615532 59615573 -58247054 + AT_rich Low_complexity Low_complexity 1 41 0 2346 57 0 13 chr9 59618024 59618324 -58244303 - AluY SINE Alu -15 296 1 189 0 0 0 chr9 59620223 59620244 -58242383 + (T)n Simple_repeat Simple_repeat 1 21 0 207 250 21 0 chr9 59620442 59620490 -58242137 + MER91 DNA MER1_type 92 140 0 1968 169 153 16 chr9 59620686 59621130 -58241497 + MLT1D LTR MaLR 1 505 0 576 234 78 0 chr9 59621280 59621408 -58241219 - MER58A DNA MER1_type 0 138 1 512 248 241 0 chr9 59621425 59621570 -58241057 + MER5A DNA MER1_type 10 189 0 312 302 234 19 chr9 59621705 59621910 -58240717 - MIR SINE MIR -10 252 4 282 318 24 12 chr9 59623631 59623716 -58238911 - MIR3 SINE MIR -10 198 113 281 214 88 57 chr9 59624099 59624213 -58238414 + MIR SINE MIR 75 188 -65 1282 153 31 27 chr9 59624368 59624629 -58237998 + L1MB5 LINE L1 5894 6155 -19 225 179 0 0 chr9 59625513 59625552 -58237075 - MIR3 SINE MIR -2 206 168 644 375 71 0 chr9 59625640 59626021 -58236606 - L3 LINE CR1 -183 1394 987 223 434 24 6 chr9 59626252 59626418 -58236209 + L2 LINE L2 2988 3156 -116 322 25 0 0 chr9 59626782 59626822 -58235805 + THE1B LTR MaLR 1 40 -324 958 127 63 6 chr9 59626849 59627007 -58235620 + THE1B LTR MaLR 194 360 -4 24 0 0 0 chr9 59628156 59628180 -58234447 + AT_rich Low_complexity Low_complexity 1 24 0 384 59 0 0 chr9 59631737 59631788 -58230839 + (CA)n Simple_repeat Simple_repeat 2 52 0 272 313 26 31 chr9 59633018 59633213 -58229414 + L1MC4a LINE L1 5739 5932 -1876 186 171 197 66 chr9 59637304 59637380 -58225247 - L2 LINE L2 0 3313 3228 587 345 19 23 chr9 59637492 59637750 -58224877 - MIR SINE MIR -3 259 3 423 0 0 0 chr9 59638087 59638134 -58224493 + (TG)n Simple_repeat Simple_repeat 2 48 0 263 298 144 10 chr9 59642004 59642108 -58220519 - MIR SINE MIR -114 148 31 633 184 86 35 chr9 59642490 59642664 -58219963 + MER53 DNA DNA 1 183 -6 276 333 42 8 chr9 59642776 59642896 -58219731 + MER77 LTR ERV1 125 248 -357 1234 260 72 21 chr9 59642899 59643294 -58219333 + MER77 LTR ERV1 215 601 -4 652 338 61 7 chr9 59643361 59643639 -58218988 + MER115 DNA AcHobo 155 447 -246 316 316 95 25 chr9 59644991 59645149 -58217478 + MIR SINE MIR 79 247 -15 2480 85 0 0 chr9 59646610 59646917 -58215710 - AluSx SINE Alu -5 307 1 23 54 0 0 chr9 59646925 59646962 -58215665 + AT_rich Low_complexity Low_complexity 1 37 0 274 305 38 9 chr9 59647264 59647369 -58215258 - MIR SINE MIR -82 180 73 522 245 98 5 chr9 59647463 59647647 -58214980 - MLT1G LTR MaLR 0 590 390 2807 163 84 23 chr9 59647660 59648229 -58214398 + MER6A DNA MER2_type 1 604 -1 438 253 89 0 chr9 59648847 59648993 -58213634 - L2 LINE L2 -11 3302 3144 1932 181 16 0 chr9 59649136 59649512 -58213115 - L1MB4 LINE L1 -6 6672 6291 429 20 0 0 chr9 59649512 59649562 -58213065 + (TG)n Simple_repeat Simple_repeat 1 50 0 445 54 0 0 chr9 59649580 59649636 -58212991 + MSTD LTR MaLR 15 70 -326 2045 196 60 28 chr9 59649691 59650403 -58212224 - L1MB4 LINE L1 -416 6262 5533 1132 167 24 5 chr9 59650403 59650613 -58212014 - MSTB LTR MaLR 0 426 213 532 232 90 0 chr9 59650615 59650770 -58211857 + L1 LINE L1 4871 5039 -1107 749 169 103 94 chr9 59650770 59650825 -58211802 + MSTB LTR MaLR 1 54 -372 1736 144 3 79 chr9 59650825 59651153 -58211474 + AluJb SINE Alu 3 307 0 749 169 103 94 chr9 59651153 59651309 -58211318 + MSTB LTR MaLR 54 215 -211 516 168 0 0 chr9 59651313 59651414 -58211213 - L1MB4 LINE L1 -1311 5333 5233 933 105 0 8 chr9 59651425 59651558 -58211069 - AluSp/q SINE Alu 0 313 182 1105 204 38 35 chr9 59651562 59651905 -58210722 - L1MB4 LINE L1 -1424 5220 4877 4387 213 32 22 chr9 59652058 59653724 -58208903 - L1MB4 LINE L1 -3949 2697 909 2504 57 0 3 chr9 59653724 59654020 -58208607 - AluY SINE Alu -16 295 1 4387 213 32 22 chr9 59654020 59654180 -58208447 - L1MB4 LINE L1 -5737 909 752 413 296 8 23 chr9 59654192 59654324 -58208303 - L1MB4 LINE L1 -5715 931 802 423 329 24 16 chr9 59654621 59654867 -58207760 - L1MB4 LINE L1 -6293 249 2 239 257 122 0 chr9 59656939 59657013 -58205614 - MIR SINE MIR -123 139 57 5993 39 0 0 chr9 59658003 59658721 -58203906 - L1PA5 LINE L1 -2 6152 5435 241 305 146 0 chr9 59659438 59659520 -58203107 + MIR SINE MIR 3 96 -166 263 194 160 131 chr9 59660282 59660457 -58202170 - MLT1K LTR MaLR -5 583 404 2225 94 3 7 chr9 59660717 59661005 -58201622 - AluSx SINE Alu -25 287 1 285 75 0 0 chr9 59663852 59663892 -58198735 + (CA)n Simple_repeat Simple_repeat 1 40 0 297 222 0 0 chr9 59663895 59663949 -58198678 + L2 LINE L2 3246 3299 -14 492 18 0 0 chr9 59663980 59664037 -58198590 + (TA)n Simple_repeat Simple_repeat 1 57 0 241 323 0 21 chr9 59664348 59664441 -58198186 + (TATATG)n Simple_repeat Simple_repeat 2 92 0 283 341 11 11 chr9 59665071 59665159 -58197468 + MIR SINE MIR 30 117 -91 569 288 112 13 chr9 59665462 59665695 -58196932 + MIR SINE MIR 2 257 -5 197 250 94 16 chr9 59667447 59667511 -58195116 + MIR SINE MIR 76 144 -118 481 227 9 27 chr9 59668050 59668160 -58194467 - MER5B DNA MER1_type -70 108 1 311 272 25 12 chr9 59669253 59669334 -58193293 + MIR SINE MIR 2 83 -179 181 172 0 0 chr9 59669840 59669869 -58192758 + MIR SINE MIR 45 73 -135 289 293 35 69 chr9 59671476 59671650 -58190977 - MER5A DNA MER1_type -9 180 13 1149 183 26 48 chr9 59672527 59672839 -58189788 + LTR52 LTR ERVL 2 306 -115 294 198 35 35 chr9 59672901 59672987 -58189640 + MLT1I LTR MaLR 314 399 -10 38 85 0 0 chr9 59673121 59673215 -58189412 + AT_rich Low_complexity Low_complexity 1 94 0 2046 192 19 30 chr9 59674131 59674594 -58188033 - LTR40b LTR ERVL -2 460 3 451 272 61 9 chr9 59674822 59674936 -58187691 + L2 LINE L2 3193 3312 -1 309 183 14 56 chr9 59675834 59675905 -58186722 + Tigger2 DNA MER2_type 2 69 -2649 * 991 120 77 45 chr9 59675889 59676175 -58186452 + Tigger2 DNA MER2_type 2267 2655 -63 2254 114 0 3 chr9 59676175 59676473 -58186154 - AluSx SINE Alu -15 297 1 991 120 77 45 chr9 59676473 59676533 -58186094 + Tigger2 DNA MER2_type 2655 2712 -6 1676 99 0 0 chr9 59676718 59676939 -58185688 - AluSc SINE Alu -5 304 84 4889 225 51 86 chr9 59677065 59679183 -58183444 - L1MB3 LINE L1 -3 6180 4046 1958 179 15 28 chr9 59679183 59679575 -58183052 - MER57A LTR ERV1 0 403 17 4889 225 51 86 chr9 59679575 59681199 -58181428 - L1MB3 LINE L1 -2137 4046 2367 1002 285 87 12 chr9 59681965 59682369 -58180258 - LTR16A LTR ERVL -5 445 12 797 225 50 35 chr9 59682385 59682723 -58179904 + L1MC5 LINE L1 7514 7856 -105 234 0 0 0 chr9 59682772 59682798 -58179829 + (CA)n Simple_repeat Simple_repeat 2 27 0 459 35 0 0 chr9 59683464 59683521 -58179106 + (CA)n Simple_repeat Simple_repeat 2 58 0 189 0 0 0 chr9 59683824 59683845 -58178782 + (CAA)n Simple_repeat Simple_repeat 1 21 0 2388 74 0 3 chr9 59685692 59685989 -58176638 - AluY SINE Alu -15 296 1 533 258 32 48 chr9 59686685 59686871 -58175756 - MER21B LTR ERV1 -186 677 495 2501 225 45 47 chr9 59687114 59687842 -58174785 - MER21B LTR ERV1 -124 739 13 285 310 7 28 chr9 59688053 59688195 -58174432 - MLT1H LTR MaLR -315 234 96 180 0 0 0 chr9 59688968 59688988 -58173639 + (TC)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr9 59689266 59689287 -58173340 + AT_rich Low_complexity Low_complexity 1 21 0 403 247 41 18 chr9 59689458 59689628 -58172999 + L1M4 LINE L1 2237 2410 -3736 482 68 27 0 chr9 59689807 59689880 -58172747 + L1P LINE L1 5349 5423 -733 418 248 44 0 chr9 59689995 59690108 -58172519 + L1ME1 LINE L1 1681 1798 -4586 2219 46 0 0 chr9 59690113 59690376 -58172251 + AluY SINE Alu 1 263 -48 1745 219 31 43 chr9 59690376 59691186 -58171441 + L1ME1 LINE L1 1936 2738 -3644 * 1857 207 21 13 chr9 59691175 59691594 -58171033 + L1ME1 LINE L1 5645 6067 -343 1028 151 0 25 chr9 59691598 59691757 -58170870 + FAM SINE Alu 18 172 -13 1274 143 0 0 chr9 59691778 59691960 -58170667 + AluSp SINE Alu 119 300 -13 1320 245 18 6 chr9 59691960 59692295 -58170332 + L1ME1 LINE L1 6060 6398 -4 216 0 0 0 chr9 59694400 59694424 -58168203 + (A)n Simple_repeat Simple_repeat 1 24 0 2288 89 17 0 chr9 59695552 59695843 -58166784 - AluSp SINE Alu -17 296 1 206 264 0 11 chr9 59697261 59697352 -58165275 + (TA)n Simple_repeat Simple_repeat 1 90 0 2112 251 132 55 chr9 59698147 59698677 -58163950 - HAL1 LINE L1 -1 2506 2018 957 194 112 24 chr9 59698677 59698883 -58163744 - MER58A DNA MER1_type 0 224 1 2112 251 132 55 chr9 59698883 59699649 -58162978 - HAL1 LINE L1 -489 2018 1111 407 231 82 27 chr9 59699946 59700093 -58162534 - HAL1 LINE L1 -1551 956 802 186 311 59 25 chr9 59700136 59700255 -58162372 + MIR SINE MIR 77 199 -63 492 269 30 0 chr9 59700476 59700610 -58162017 + MIR SINE MIR 54 191 -71 2251 101 3 13 chr9 59700763 59701061 -58161566 + AluSc SINE Alu 1 295 -14 232 313 0 0 chr9 59701612 59701679 -58160948 + (TATATG)n Simple_repeat Simple_repeat 5 71 0 2114 156 42 3 chr9 59702080 59702414 -58160213 + MER7A DNA MER2_type 1 345 -1 378 0 0 0 chr9 59702487 59702529 -58160098 + (CA)n Simple_repeat Simple_repeat 1 42 0 29 0 0 0 chr9 59703211 59703240 -58159387 + AT_rich Low_complexity Low_complexity 1 29 0 328 319 63 24 chr9 59703830 59703886 -58158741 - MIR SINE MIR 0 262 210 2456 223 19 4 chr9 59703886 59704349 -58158278 - MER70A LTR ERVL 0 472 3 328 319 63 24 chr9 59704349 59704499 -58158128 - MIR SINE MIR -52 210 48 185 380 49 42 chr9 59704568 59704852 -58157775 + L2 LINE L2 2387 2672 -642 596 205 45 148 chr9 59704853 59705097 -58157530 - MER20 DNA MER1_type 0 219 1 235 355 36 48 chr9 59707733 59707899 -58154728 + L2 LINE L2 2901 3064 -208 2582 117 11 3 chr9 59708425 59708777 -58153850 + THE1A LTR MaLR 1 355 0 301 341 37 33 chr9 59709367 59709581 -58153046 - LTR33 LTR ERVL 0 521 307 381 286 20 0 chr9 59709621 59709719 -58152908 - LTR33 LTR ERVL -304 217 118 2266 187 28 21 chr9 59709719 59710142 -58152485 - MSTB LTR MaLR 0 426 1 9666 168 14 5 chr9 59710154 59711776 -58150851 - MSTB-int LTR MaLR -13 1638 2 2849 137 16 14 chr9 59711777 59712202 -58150425 - MSTB LTR MaLR 0 426 1 311 271 34 34 chr9 59712202 59712320 -58150307 - LTR33 LTR ERVL -399 122 5 21 0 0 0 chr9 59712515 59712536 -58150091 + AT_rich Low_complexity Low_complexity 1 21 0 213 250 42 0 chr9 59713589 59713637 -58148990 + MER91A DNA MER1_type 122 171 -25 1908 156 22 68 chr9 59713724 59713819 -58148808 + MER7A DNA MER2_type 1 99 -2939 1889 167 0 7 chr9 59713819 59714125 -58148502 - AluJb SINE Alu -8 304 1 1908 156 22 68 chr9 59714125 59714394 -58148233 + MER7A DNA MER2_type 99 346 0 879 127 0 0 chr9 59714481 59714599 -58148028 + AluSq/x SINE Alu 1 118 -194 306 343 208 0 chr9 59714601 59714779 -58147848 + L1M4 LINE L1 760 974 -6592 3911 247 34 37 chr9 59715119 59715624 -58147003 + L1M4 LINE L1 2081 2586 -4979 2499 87 0 0 chr9 59715624 59715935 -58146692 + AluY SINE Alu 1 311 0 3911 247 34 37 chr9 59715935 59717227 -58145400 + L1M4 LINE L1 2586 3618 -3947 214 311 14 0 chr9 59717824 59717898 -58144729 + MIR SINE MIR 21 95 -167 579 100 12 0 chr9 59719799 59719879 -58142748 + AluSc SINE Alu 4 84 -225 1724 179 38 35 chr9 59719920 59720798 -58141829 + SVA Other Other 432 868 -518 1848 83 0 0 chr9 59720924 59721153 -58141474 + AluSc SINE Alu 73 301 -8 646 267 83 39 chr9 59721615 59722072 -58140555 + L1M4 LINE L1 5907 6383 -1182 2465 71 0 0 chr9 59722132 59722427 -58140200 + AluY SINE Alu 1 295 -16 301 272 6 89 chr9 59722729 59722887 -58139740 + L1ME4a LINE L1 5954 6098 -23 713 99 0 0 chr9 59724367 59724458 -58138169 + AluS SINE Alu 2 92 -221 248 173 27 67 chr9 59724954 59725029 -58137598 - LTR33A LTR ERVL -17 506 435 282 204 19 0 chr9 59727093 59727147 -58135480 - MER45C DNA AcHobo 0 953 899 1256 231 35 0 chr9 59727243 59727503 -58135124 - MER45C DNA AcHobo -684 269 1 259 336 118 8 chr9 59727793 59727912 -58134715 + MIR SINE MIR 23 154 -108 2346 102 55 22 chr9 59728780 59729142 -58133485 - THE1C LTR MaLR 0 375 2 2661 20 0 3 chr9 59729283 59729580 -58133047 + AluYa5 SINE Alu 1 296 -15 525 235 0 10 chr9 59729673 59729775 -58132852 - MER5A DNA MER1_type -80 109 9 1678 201 98 53 chr9 59730490 59730654 -58131973 - LTR54 LTR ERV1 0 510 355 6629 25 9 0 chr9 59730654 59731387 -58131240 + L1PA3 LINE L1 5413 6152 -3 1678 201 98 53 chr9 59731387 59731555 -58131072 - LTR54 LTR ERV1 -155 355 196 198 0 0 0 chr9 59731555 59731577 -58131050 + (TTTTA)n Simple_repeat Simple_repeat 3 24 0 1678 201 98 53 chr9 59731577 59731731 -58130896 - LTR54 LTR ERV1 -314 196 1 2971 9 0 0 chr9 59732451 59732769 -58129858 - AluYb8 SINE Alu 0 318 1 275 308 19 19 chr9 59733182 59733289 -58129338 + MIR SINE MIR 34 140 -68 195 352 32 48 chr9 59733309 59733434 -58129193 - L2 LINE L2 0 3313 3191 239 344 47 23 chr9 59734045 59734173 -58128454 - L2 LINE L2 -4 3309 3179 274 300 139 17 chr9 59734749 59734979 -58127648 + L2 LINE L2 2319 2576 -738 1693 181 54 61 chr9 59735402 59735843 -58126784 + MER31A LTR ERV1 1 438 -47 5728 156 39 4 chr9 59736192 59737991 -58124636 - L1PB2 LINE L1 0 6151 4293 477 342 90 24 chr9 59741120 59741530 -58121097 - L2 LINE L2 -114 3158 2718 2266 128 0 0 chr9 59743574 59743886 -58118741 + AluSx SINE Alu 1 312 0 254 28 0 28 chr9 59746042 59746078 -58116549 + (GA)n Simple_repeat Simple_repeat 1 35 0 344 293 200 0 chr9 59746467 59746607 -58116020 - MER5A DNA MER1_type -2 187 20 422 367 103 23 chr9 59746746 59747133 -58115494 - L3b LINE CR1 -19 1564 1147 2399 93 0 3 chr9 59747627 59747938 -58114689 - AluY SINE Alu -1 310 1 180 253 7 160 chr9 59747941 59748091 -58114536 + MIR SINE MIR 122 248 -14 234 302 32 0 chr9 59748141 59748204 -58114423 + L2 LINE L2 3249 3313 0 2301 100 0 0 chr9 59748884 59749184 -58113443 - AluSx SINE Alu -12 300 1 2126 152 0 0 chr9 59749596 59749899 -58112728 + AluSx SINE Alu 1 303 -9 281 184 0 0 chr9 59750149 59750198 -58112429 - MER8 DNA MER2_type 0 239 191 2104 130 3 0 chr9 59750199 59750498 -58112129 - AluSx SINE Alu -12 300 1 2542 270 76 46 chr9 59750527 59752546 -58110081 - HAL1 LINE L1 -279 2228 1 259 291 0 10 chr9 59756351 59756454 -58106173 + (TA)n Simple_repeat Simple_repeat 2 103 0 632 320 79 45 chr9 59757967 59758345 -58104282 - L2 LINE L2 -98 3215 2825 32521 74 8 9 chr9 59758345 59763839 -58098788 + L1PA6 LINE L1 675 6154 0 339 345 47 0 chr9 59763859 59764091 -58098536 - L1MEd LINE L1 -5303 816 574 21 36 0 0 chr9 59765276 59765304 -58097323 + AT_rich Low_complexity Low_complexity 1 28 0 249 322 9 9 chr9 59765707 59765822 -58096805 + L1ME LINE L1 5530 5644 -477 180 375 0 0 chr9 59766101 59766165 -58096462 + L3 LINE CR1 1493 1556 -21 2619 164 113 19 chr9 59766744 59767048 -58095579 + LTR48 LTR ERV1 4 278 -509 2409 77 0 0 chr9 59767048 59767346 -58095281 - AluY SINE Alu -13 298 1 2619 164 113 19 chr9 59767346 59767687 -58094940 + LTR48 LTR ERV1 278 710 -77 275 189 0 27 chr9 59768083 59768157 -58094470 + CT-rich Low_complexity Low_complexity 3 74 0 315 326 54 0 chr9 59768158 59768250 -58094377 - L2 LINE L2 -17 3255 3159 226 197 0 98 chr9 59769086 59769147 -58093480 + MIR SINE MIR 94 148 -60 778 207 56 35 chr9 59769166 59769364 -58093263 + MER3 DNA MER1_type 1 202 -7 1008 297 87 31 chr9 59770682 59771140 -58091487 - L2 LINE L2 0 3313 2830 2116 135 73 34 chr9 59771146 59771554 -58091073 - MSTA LTR MaLR 0 428 5 683 221 24 9 chr9 59771556 59771898 -58090729 + (TG)n Simple_repeat Simple_repeat 1 347 0 849 222 258 20 chr9 59771905 59772211 -58090416 - L2 LINE L2 -493 2821 2443 230 288 62 25 chr9 59772469 59772549 -58090078 + MIR SINE MIR 164 246 -16 437 115 13 0 chr9 59773311 59773389 -58089238 + (TC)n Simple_repeat Simple_repeat 2 80 0 431 282 88 62 chr9 59773418 59773691 -58088936 - MER115 DNA AcHobo -259 434 155 1050 170 123 43 chr9 59773693 59773914 -58088713 + MER33 DNA MER1_type 1 254 -2331 2276 64 6 77 chr9 59773914 59774240 -58088387 - AluY SINE Alu -8 303 1 1050 170 123 43 chr9 59774240 59774318 -58088309 + MER33 DNA MER1_type 254 324 0 757 173 64 0 chr9 59774326 59774482 -58088145 + MER5A DNA MER1_type 1 166 -23 256 253 23 23 chr9 59775550 59775637 -58086990 + CT-rich Low_complexity Low_complexity 3 89 0 231 319 0 0 chr9 59776492 59776564 -58086063 + tRNA-Arg-AGG tRNA tRNA 1 72 -4 370 214 60 0 chr9 59776828 59776912 -58085715 + MER5A DNA MER1_type 42 130 -59 222 308 0 15 chr9 59777212 59777277 -58085350 - MIR3 SINE MIR -3 205 142 303 293 0 0 chr9 59778525 59778600 -58084027 - MIR3 SINE MIR -44 164 90 668 275 36 39 chr9 59782592 59782676 -58079951 - LTR16C LTR ERVL 0 491 408 461 157 81 127 chr9 59782676 59782873 -58079754 + MER53 DNA DNA 1 188 -1 668 275 36 39 chr9 59782873 59783068 -58079559 - LTR16C LTR ERVL -83 408 213 277 322 33 10 chr9 59783208 59783322 -58079305 - MIR SINE MIR -79 129 31 21 36 0 0 chr9 59783378 59783406 -58079221 + AT_rich Low_complexity Low_complexity 1 28 0 277 390 18 32 chr9 59783526 59783744 -58078883 + L2 LINE L2 2576 2790 -524 1484 116 31 5 chr9 59783746 59783970 -58078657 - L1PA10 LINE L1 -11 6157 5928 20920 172 36 24 chr9 59783970 59788481 -58074146 - L1P LINE L1 -909 5237 673 191 369 47 7 chr9 59788537 59788686 -58073941 + L2 LINE L2 2826 2980 -292 305 290 40 30 chr9 59788804 59788904 -58073723 + L2 LINE L2 3197 3297 -16 971 226 32 9 chr9 59788924 59789141 -58073486 + MER58A DNA MER1_type 1 222 -2 181 95 24 24 chr9 59790306 59790348 -58072279 + (TAA)n Simple_repeat Simple_repeat 3 44 0 2241 112 7 0 chr9 59790559 59790864 -58071763 - AluSg SINE Alu -3 307 1 977 234 44 26 chr9 59791172 59791556 -58071071 - L1MEc LINE L1 -3528 2687 2297 287 244 91 39 chr9 59791590 59791820 -58070807 - L1MEc LINE L1 -4132 2264 2023 635 285 15 6 chr9 59791924 59792130 -58070497 + LTR33 LTR ERVL 311 520 -1 200 277 0 0 chr9 59793750 59793797 -58068830 - MIR SINE MIR -70 192 146 383 259 102 9 chr9 59793802 59793910 -58068717 + MIR SINE MIR 37 154 -108 261 244 84 92 chr9 59795708 59795839 -58066788 + MIR SINE MIR 66 195 -67 191 171 0 24 chr9 59795972 59796013 -58066614 - L2 LINE L2 -2 3270 3231 485 259 35 0 chr9 59796350 59796466 -58066161 - L2 LINE L2 -4 3309 3190 438 20 0 0 chr9 59796570 59796621 -58066006 + (CA)n Simple_repeat Simple_repeat 2 52 0 862 202 6 33 chr9 59796769 59796952 -58065675 + MER5B DNA MER1_type 1 178 0 24 0 0 0 chr9 59800264 59800288 -58062339 + AT_rich Low_complexity Low_complexity 1 24 0 1358 177 117 0 chr9 59802544 59802809 -58059818 - AluJb SINE Alu -5 307 12 181 217 121 96 chr9 59803222 59803305 -58059322 + L2 LINE L2 3202 3286 -27 2674 154 166 0 chr9 59803823 59804342 -58058285 - MER6A DNA MER2_type 0 605 1 398 172 0 0 chr9 59805330 59805394 -58057233 - MER5B DNA MER1_type 0 178 115 409 162 0 0 chr9 59805398 59805472 -58057155 + L1P5 LINE L1 5608 5681 -475 691 248 0 0 chr9 59805481 59805610 -58057017 - MER5B DNA MER1_type -48 130 2 522 277 170 0 chr9 59805636 59805777 -58056850 - MER5A DNA MER1_type -16 173 9 2332 92 10 0 chr9 59806440 59806745 -58055882 + AluSg SINE Alu 1 308 -2 665 213 52 29 chr9 59806957 59807244 -58055383 + MER58 DNA MER1_type 1 2420 0 1655 130 37 47 chr9 59807439 59807739 -58054888 - AluSx SINE Alu -15 297 1 24 0 0 0 chr9 59808257 59808281 -58054346 + AT_rich Low_complexity Low_complexity 1 24 0 206 350 30 41 chr9 59808600 59808807 -58053820 + MIR SINE MIR 2 211 -51 24 38 0 38 chr9 59808988 59809018 -58053609 + AT_rich Low_complexity Low_complexity 1 30 -21 1519 196 35 32 chr9 59809018 59809329 -58053298 + AluJb SINE Alu 1 312 0 24 38 0 38 chr9 59809329 59809351 -58053276 + AT_rich Low_complexity Low_complexity 30 51 0 180 175 32 143 chr9 59810203 59810266 -58052361 - L2 LINE L2 -22 3250 3195 22 35 0 0 chr9 59811619 59811648 -58050979 + AT_rich Low_complexity Low_complexity 1 29 0 646 231 0 8 chr9 59812235 59812365 -58050262 - FLAM_A SINE Alu -4 129 1 1243 277 62 3 chr9 59813246 59813614 -58049013 - LTR16C LTR ERVL 0 491 102 641 217 106 12 chr9 59813771 59813932 -58048695 - MIR SINE MIR -82 180 5 321 259 0 49 chr9 59815373 59815410 -58047217 + MIR SINE MIR 151 188 -74 660 268 89 0 chr9 59815410 59815600 -58047027 - MER63A DNA MER1_type -3 207 1 321 259 0 49 chr9 59815600 59815643 -58046984 + MIR SINE MIR 188 227 -35 4534 176 33 19 chr9 59815677 59817098 -58045529 + L1P4 LINE L1 4198 5634 -532 2192 158 24 7 chr9 59817213 59817632 -58044995 + L1PA16 LINE L1 5514 5939 -227 467 175 193 0 chr9 59817633 59817747 -58044880 + L1MB5 LINE L1 6031 6166 -8 1944 118 103 32 chr9 59818011 59818351 -58044276 - THE1B LTR MaLR 0 364 1 11104 94 25 11 chr9 59818351 59819438 -58043189 - THE1B-int LTR MaLR 0 1580 464 2315 107 0 0 chr9 59819438 59819746 -58042881 - AluY SINE Alu -3 308 1 11104 94 25 11 chr9 59819746 59820217 -58042410 - THE1B-int LTR MaLR -1116 464 1 2346 116 28 19 chr9 59820217 59820578 -58042049 - THE1B LTR MaLR 0 364 1 193 366 106 9 chr9 59821212 59821361 -58041266 + MIR SINE MIR 19 189 -68 21 0 0 0 chr9 59821396 59821417 -58041210 + AT_rich Low_complexity Low_complexity 1 21 0 377 323 106 11 chr9 59821574 59821763 -58040864 + MIR SINE MIR 12 218 -44 1973 137 38 32 chr9 59822396 59822768 -58039859 - THE1C LTR MaLR 0 375 2 992 233 56 122 chr9 59822957 59823602 -58039025 + LTR19C LTR ERV1 1 779 0 460 281 45 11 chr9 59824430 59824608 -58038019 + HAL1 LINE L1 682 865 -1642 311 192 0 14 chr9 59824664 59824737 -58037890 + HAL1 LINE L1 2242 2313 -194 235 344 163 32 chr9 59826414 59826879 -58035748 + L2 LINE L2 637 1162 -2152 1009 113 0 0 chr9 59826919 59827052 -58035575 - AluSg/x SINE Alu -19 293 161 1032 330 78 70 chr9 59827057 59828416 -58034211 + L2 LINE L2 1229 2598 -716 314 179 15 0 chr9 59828484 59828551 -58034076 + LTR52 LTR ERVL 1 68 -353 2577 126 46 42 chr9 59828659 59828670 -58033957 - L1M1 LINE L1 -511 5789 5780 298 0 23 23 chr9 59828670 59828713 -58033914 + (CA)n Simple_repeat Simple_repeat 2 44 0 2577 126 46 42 chr9 59828713 59829278 -58033349 - L1M1 LINE L1 -520 5780 5211 1942 172 24 5 chr9 59829278 59829652 -58032975 + L1MA4 LINE L1 5907 6296 -4 2072 165 94 14 chr9 59830034 59830524 -58032103 - L1MA6 LINE L1 -5 6295 5767 226 349 70 8 chr9 59830531 59830660 -58031967 - L2 LINE L2 -546 2768 2632 2041 131 0 10 chr9 59831111 59831408 -58031219 - AluSx SINE Alu -18 294 1 181 0 69 0 chr9 59831791 59831820 -58030807 + (CAAAAA)n Simple_repeat Simple_repeat 2 32 0 1379 167 56 4 chr9 59832000 59832270 -58030357 - AluJb SINE Alu -28 284 1 922 35 9 9 chr9 59832944 59833057 -58029570 - AluY SINE Alu -187 124 12 1351 77 0 0 chr9 59833058 59833227 -58029400 + AluY SINE Alu 143 311 0 480 219 9 17 chr9 59833369 59833502 -58029125 + MLT1J2 LTR MaLR 66 197 -249 650 254 116 32 chr9 59833514 59833799 -58028828 - MLT1E LTR MaLR 0 593 237 367 208 10 10 chr9 59833840 59833941 -58028686 + GA-rich Low_complexity Low_complexity 5 105 0 522 287 37 75 chr9 59833954 59834142 -58028485 - MLT1E LTR MaLR -361 181 1 506 299 12 18 chr9 59834171 59834335 -58028292 + MLT1J2 LTR MaLR 266 428 -22 360 308 85 100 chr9 59834748 59835089 -58027538 + L2 LINE L2 2937 3272 0 555 174 43 0 chr9 59835457 59835572 -58027055 + L1MB7 LINE L1 5918 6037 -147 209 109 22 0 chr9 59835574 59835620 -58027007 + T-rich Low_complexity Low_complexity 2 48 0 461 103 86 26 chr9 59835633 59835749 -58026878 + L1MB7 LINE L1 6043 6165 -19 183 42 0 0 chr9 59836817 59836841 -58025786 + (CAA)n Simple_repeat Simple_repeat 2 25 0 861 234 50 56 chr9 59836841 59837253 -58025374 + L1MC5 LINE L1 6545 6915 -893 577 190 6 23 chr9 59837268 59837442 -58025185 + GA-rich Low_complexity Low_complexity 2 172 0 1893 206 74 62 chr9 59837488 59838397 -58024230 + L1MC5 LINE L1 6991 7910 -51 1818 170 6 36 chr9 59838823 59839187 -58023440 + THE1A LTR MaLR 1 353 -2 365 342 33 0 chr9 59839191 59839311 -58023316 + L2 LINE L2 3189 3312 -1 216 182 0 0 chr9 59839312 59839356 -58023271 + (TGGA)n Simple_repeat Simple_repeat 2 45 0 553 237 230 0 chr9 59839475 59839627 -58023000 - MER5A DNA MER1_type -1 188 2 325 314 93 14 chr9 59839646 59839786 -58022841 + MER5A DNA MER1_type 28 178 -11 895 194 5 34 chr9 59839804 59840010 -58022617 + MER3 DNA MER1_type 5 204 -5 219 330 17 70 chr9 59840364 59840479 -58022148 - MIR SINE MIR -64 198 90 433 144 0 59 chr9 59840701 59840888 -58021739 + (CTATA)n Simple_repeat Simple_repeat 2 177 0 290 148 0 71 chr9 59840899 59841081 -58021546 + (CTATA)n Simple_repeat Simple_repeat 2 170 0 * 335 149 6 58 chr9 59841048 59841222 -58021405 + (TATAG)n Simple_repeat Simple_repeat 3 167 0 454 269 65 50 chr9 59842836 59843037 -58019590 + MIR SINE MIR 26 229 -33 639 296 71 8 chr9 59843105 59843527 -58019100 - LTR33 LTR ERVL -18 503 12 220 328 0 0 chr9 59843670 59843731 -58018896 + GA-rich Low_complexity Low_complexity 3 63 0 254 360 158 0 chr9 59844793 59844932 -58017695 - L2 LINE L2 -247 3066 2906 910 176 37 15 chr9 59845680 59845851 -58016776 - L1MC2 LINE L1 -10 6334 6168 1501 172 141 66 chr9 59845851 59846247 -58016380 + MSTA LTR MaLR 1 426 -2 910 176 37 15 chr9 59846247 59847139 -58015488 - L1MC2 LINE L1 -176 6168 5092 11826 227 28 41 chr9 59847146 59852625 -58010002 + L1M1 LINE L1 3 5344 -1557 1659 173 16 53 chr9 59852625 59852948 -58009679 + AluJo SINE Alu 1 311 -1 11826 227 28 41 chr9 59852948 59853750 -58008877 + L1M1 LINE L1 5344 6155 -746 421 161 11 0 chr9 59853850 59853937 -58008690 + L1MA4A LINE L1 6036 6123 -180 * 440 201 0 0 chr9 59853934 59854038 -58008589 + L1MA4A LINE L1 6053 6280 0 1366 240 54 0 chr9 59854049 59854171 -58008456 - L1M4 LINE L1 -1071 6494 6380 402 21 0 0 chr9 59854171 59854218 -58008409 + (TTA)n Simple_repeat Simple_repeat 2 48 0 1366 240 54 0 chr9 59854218 59854504 -58008123 - L1M4 LINE L1 -1185 6380 6064 359 233 19 69 chr9 59856820 59856979 -58005648 + MER103 DNA DNA 3 153 -13 311 322 81 52 chr9 59857020 59857231 -58005396 - HAL1 LINE L1 -5 2502 2286 2500 263 54 15 chr9 59857418 59858746 -58003881 - L1MD3 LINE L1 -34 6325 4977 3115 256 28 24 chr9 59858792 59859978 -58002649 - L1M4 LINE L1 -4367 3198 2008 1977 256 17 36 chr9 59860129 59860711 -58001916 - L1M4 LINE L1 -6452 1037 467 25 31 0 0 chr9 59861461 59861493 -58001134 + AT_rich Low_complexity Low_complexity 1 32 0 30 0 0 0 chr9 59861550 59861580 -58001047 + AT_rich Low_complexity Low_complexity 1 30 0 324 327 42 20 chr9 59862003 59862309 -58000318 - L1ME LINE L1 -502 5660 5348 856 308 126 37 chr9 59862323 59863004 -57999623 - L1ME LINE L1 -841 5305 4564 21 36 0 0 chr9 59863089 59863117 -57999510 + AT_rich Low_complexity Low_complexity 1 28 0 2680 42 0 0 chr9 59863333 59863642 -57998985 - AluY SINE Alu -2 309 1 489 203 49 21 chr9 59863682 59863825 -57998802 - L1MC4a LINE L1 -1358 6450 6304 * 611 121 0 0 chr9 59863822 59863921 -57998706 - L1MA4 LINE L1 -403 5897 5799 189 0 0 0 chr9 59864228 59864249 -57998378 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 567 185 23 15 chr9 59864619 59864749 -57997878 - MER94 DNA DNA -2 132 2 192 315 108 54 chr9 59864762 59864892 -57997735 + MIR3 SINE MIR 66 202 -6 3822 118 38 58 chr9 59865028 59865784 -57996843 + Tigger3(Golem) DNA MER2_type 2288 3028 -1 21 0 0 0 chr9 59866234 59866255 -57996372 + AT_rich Low_complexity Low_complexity 1 21 0 976 272 104 19 chr9 59866932 59867355 -57995272 + MLT1H LTR MaLR 8 466 -83 2000 287 54 60 chr9 59868938 59869963 -57992664 + ERVL LTR ERVL 3210 4228 -1536 855 278 48 9 chr9 59869973 59870304 -57992323 + MLT2E LTR ERVL 281 624 -4 282 236 64 70 chr9 59870458 59870615 -57992012 + L1ME4a LINE L1 5964 6119 -2 288 0 0 0 chr9 59871064 59871096 -57991531 + (TG)n Simple_repeat Simple_repeat 1 32 0 188 297 109 73 chr9 59871175 59871340 -57991287 - L2 LINE L2 -556 2758 2588 1070 256 65 21 chr9 59871600 59871987 -57990640 - MLT1I LTR MaLR 0 409 6 490 270 107 27 chr9 59873720 59873983 -57988644 + MLT1K LTR MaLR 143 426 -162 221 372 117 15 chr9 59874249 59874386 -57988241 + L2 LINE L2 3099 3249 -23 602 263 7 0 chr9 59876569 59876706 -57985921 - MER63A DNA MER1_type -16 194 57 2314 127 16 5 chr9 59876715 59877086 -57985541 - THE1C LTR MaLR 0 375 1 251 122 0 0 chr9 59877086 59877127 -57985500 - THE1C-int LTR MaLR 0 1580 1540 289 81 0 0 chr9 59877127 59877164 -57985463 - tRNA-Arg-CGC tRNA tRNA -24 52 16 9820 123 41 11 chr9 59877164 59878698 -57983929 - THE1C-int LTR MaLR 0 1580 1 2313 152 5 3 chr9 59878698 59879072 -57983555 - THE1C LTR MaLR 0 375 1 227 191 24 0 chr9 59879081 59879123 -57983504 - MER63 DNA MER1_type -167 43 1 221 318 0 16 chr9 59879126 59879189 -57983438 - MIR SINE MIR -176 86 25 532 247 157 18 chr9 59879500 59879723 -57982904 - LTR16A1 LTR ERVL -3 454 201 2278 92 3 0 chr9 59880926 59881220 -57981407 + AluSp SINE Alu 1 295 -18 324 296 112 16 chr9 59882911 59883036 -57979591 + MIR3 SINE MIR 21 157 -51 4577 127 32 37 chr9 59883518 59883658 -57978969 - L1MA4A LINE L1 -2 7003 6864 1377 193 40 50 chr9 59883658 59883959 -57978668 - AluJo SINE Alu -14 298 1 4577 127 32 37 chr9 59883959 59884658 -57977969 - L1MA4A LINE L1 -141 6864 6168 431 229 68 5 chr9 59884688 59884880 -57977747 - L1 LINE L1 -2919 3227 3024 463 199 23 15 chr9 59885167 59885298 -57977329 - L1 LINE L1 -3099 3047 2916 * 11259 194 70 19 chr9 59885266 59888496 -57974131 - L1MA4A LINE L1 -1571 5277 3 1678 172 3 26 chr9 59889553 59889861 -57972766 + AluJo SINE Alu 1 301 -11 1846 130 6 6 chr9 59890642 59890964 -57971663 + L1MA9 LINE L1 5969 6290 -22 22 35 0 0 chr9 59892383 59892412 -57970215 + AT_rich Low_complexity Low_complexity 1 29 0 424 299 36 39 chr9 59892935 59893269 -57969358 + HAL1 LINE L1 1486 1818 -689 2019 118 77 57 chr9 59893584 59894023 -57968604 - LTR7 LTR ERV1 -2 448 1 1576 62 74 19 chr9 59894023 59894281 -57968346 - HERVH LTR ERV1 0 7713 7442 1085 73 0 0 chr9 59894281 59894432 -57968195 - HERVH LTR ERV1 -3074 4639 4489 3054 117 4 4 chr9 59894435 59894924 -57967703 - HERVH LTR ERV1 -3720 3993 3505 976 115 20 0 chr9 59894928 59895076 -57967551 - HERVH LTR ERV1 -4423 3290 3140 * 15313 105 11 10 chr9 59895070 59897867 -57964760 - HERVH LTR ERV1 -4726 2987 1 2159 119 89 66 chr9 59897869 59898307 -57964320 - LTR7 LTR ERV1 -2 448 1 1036 168 40 15 chr9 59899228 59899430 -57963197 - MER3 DNA MER1_type 0 209 3 752 211 45 81 chr9 59900192 59900415 -57962212 - MIR SINE MIR -4 258 44 334 219 353 8 chr9 59900842 59900905 -57961722 + MER5B DNA MER1_type 1 41 -137 333 0 0 0 chr9 59900905 59900942 -57961685 + (TC)n Simple_repeat Simple_repeat 2 38 0 334 219 353 8 chr9 59900942 59900997 -57961630 + MER5B DNA MER1_type 41 160 -18 348 94 0 0 chr9 59902178 59902231 -57960396 + (TG)n Simple_repeat Simple_repeat 2 54 0 1793 294 101 39 chr9 59902400 59903741 -57958886 - ERVL LTR ERVL -303 5461 4013 1190 325 80 39 chr9 59903809 59904802 -57957825 - ERVL LTR ERVL -4013 1751 618 309 26 0 0 chr9 59904802 59904840 -57957787 + (TTG)n Simple_repeat Simple_repeat 2 39 0 1190 325 80 39 chr9 59904840 59905119 -57957508 - ERVL LTR ERVL -5146 618 352 429 198 121 110 chr9 59905441 59905741 -57956886 - LTR41 LTR ERVL 0 795 474 887 189 11 31 chr9 59906134 59906325 -57956302 - LTR41 LTR ERVL -586 187 1 438 245 100 12 chr9 59907174 59907339 -57955288 - MIR SINE MIR -45 217 42 227 204 0 0 chr9 59907357 59907406 -57955221 + T-rich Low_complexity Low_complexity 1 49 0 889 86 0 8 chr9 59907434 59907551 -57955076 - L1PA11 LINE L1 -2 6172 6057 1910 248 115 49 chr9 59908957 59909854 -57952773 - L1ME1 LINE L1 -6 6160 5216 297 151 0 0 chr9 59910143 59910196 -57952431 + (CA)n Simple_repeat Simple_repeat 2 54 0 632 253 193 82 chr9 59911666 59911699 -57950928 - L2 LINE L2 0 3313 3285 1849 199 39 17 chr9 59911699 59912055 -57950572 + MLT1A1 LTR MaLR 2 365 0 632 253 193 82 chr9 59912055 59912110 -57950517 - L2 LINE L2 -28 3285 3238 2151 133 97 24 chr9 59912110 59912449 -57950178 - THE1B LTR MaLR 0 364 1 632 253 193 82 chr9 59912449 59912899 -57949728 - L2 LINE L2 -75 3238 2736 2249 157 54 12 chr9 59914081 59914489 -57948138 - MSTB1 LTR MaLR -7 425 1 388 196 89 0 chr9 59914489 59914584 -57948043 + MER3 DNA MER1_type 82 186 -23 333 100 33 0 chr9 59914584 59914644 -57947983 + MER3 DNA MER1_type 2244 2305 0 278 353 86 14 chr9 59914649 59914788 -57947839 - L2 LINE L2 -7 3265 3117 1577 147 147 46 chr9 59915020 59915367 -57947260 - L1MC1 LINE L1 0 6333 5952 1429 187 47 0 chr9 59915367 59915688 -57946939 + MER3 DNA MER1_type 2289 2624 0 214 312 101 51 chr9 59916902 59917040 -57945587 + L2 LINE L2 2891 3035 -237 301 261 217 0 chr9 59917347 59917439 -57945188 + L2 LINE L2 3161 3272 0 2053 139 13 3 chr9 59917768 59918077 -57944550 + AluSx SINE Alu 1 312 0 3470 177 52 23 chr9 59918462 59919079 -57943548 - MER41B LTR ERV1 0 635 1 189 0 0 0 chr9 59919345 59919366 -57943261 + (TAA)n Simple_repeat Simple_repeat 2 22 0 424 337 144 34 chr9 59919572 59919898 -57942729 - L3 LINE CR1 -1 1576 1215 251 242 30 15 chr9 59921391 59921457 -57941170 + MER5A DNA MER1_type 8 74 -115 2408 78 3 0 chr9 59921458 59921754 -57940873 + AluSp SINE Alu 1 297 -16 216 0 0 0 chr9 59922648 59922672 -57939955 + (T)n Simple_repeat Simple_repeat 1 24 0 1966 162 0 0 chr9 59923354 59923657 -57938970 - L1PB4 LINE L1 -60 6096 5794 192 141 59 12 chr9 59923741 59923826 -57938801 + (TA)n Simple_repeat Simple_repeat 1 89 0 25 0 0 0 chr9 59923854 59923879 -57938748 + AT_rich Low_complexity Low_complexity 1 25 0 2898 120 24 11 chr9 59923881 59923895 -57938732 - L1PB4 LINE L1 -365 5791 5779 231 61 0 0 chr9 59923895 59923928 -57938699 + (CA)n Simple_repeat Simple_repeat 1 33 0 2898 120 24 11 chr9 59923928 59924372 -57938255 - L1PB4 LINE L1 -377 5779 5327 827 172 0 0 chr9 59925745 59925861 -57936766 - FLAM_C SINE Alu -26 117 2 193 240 0 167 chr9 59925948 59925991 -57936636 + L2 LINE L2 3158 3178 -94 1686 129 110 4 chr9 59925991 59926254 -57936373 - AluSx SINE Alu -21 291 1 193 240 0 167 chr9 59926254 59926306 -57936321 + L2 LINE L2 3178 3237 -35 2265 236 55 77 chr9 59926309 59927098 -57935529 - MER21B LTR ERV1 -92 771 1 252 265 0 0 chr9 59927690 59927788 -57934839 + (TA)n Simple_repeat Simple_repeat 2 99 0 1306 185 145 7 chr9 59927801 59928098 -57934529 - MER58B DNA MER1_type -3 338 1 2071 206 28 34 chr9 59929782 59930252 -57932375 - MLT1C LTR MaLR 0 467 1 2446 81 3 0 chr9 59930364 59930671 -57931956 + AluSp SINE Alu 5 312 -1 415 258 96 30 chr9 59931103 59931270 -57931357 - MER5B DNA MER1_type 0 178 1 631 211 160 6 chr9 59931284 59931440 -57931187 - MER5A DNA MER1_type -6 183 4 266 207 0 0 chr9 59931445 59931503 -57931124 - MER5B DNA MER1_type -6 172 115 1252 151 18 36 chr9 59931506 59931725 -57930902 + AluJo SINE Alu 89 303 -9 611 199 37 59 chr9 59931725 59931861 -57930766 - MER5B DNA MER1_type -45 133 1 2347 98 0 13 chr9 59932314 59932629 -57929998 + AluSq SINE Alu 1 311 -2 2158 141 19 43 chr9 59933272 59933648 -57928979 + MLT1B LTR MaLR 1 367 -23 293 287 128 22 chr9 59934382 59934613 -57928014 + Charlie8 DNA MER1_type 71 1426 -991 2399 150 107 65 chr9 59934879 59935373 -57927254 - MLT2B2 LTR ERVL 0 515 1 268 318 135 20 chr9 59936862 59937010 -57925617 - MIR SINE MIR -70 192 28 290 296 31 10 chr9 59937067 59937165 -57925462 - MIR SINE MIR -135 127 28 2612 61 0 3 chr9 59937291 59937603 -57925024 - AluY SINE Alu 0 311 1 300 357 38 2 chr9 59937947 59938072 -57924555 - MIR SINE MIR -40 168 34 3666 189 16 7 chr9 59938186 59938859 -57923768 + LTR58 LTR ERV1 1 679 0 1879 102 69 11 chr9 59938930 59939204 -57923423 - AluSc SINE Alu -15 294 5 430 276 0 35 chr9 59939329 59939474 -57923153 + GA-rich Low_complexity Low_complexity 2 141 0 2457 65 0 13 chr9 59940401 59940710 -57921917 + AluY SINE Alu 1 305 -6 22 56 0 0 chr9 59940995 59941031 -57921596 + AT_rich Low_complexity Low_complexity 1 36 0 2110 101 14 7 chr9 59941123 59941419 -57921208 + AluY SINE Alu 1 298 -13 243 152 0 0 chr9 59941821 59941867 -57920760 + (CTCA)n Simple_repeat Simple_repeat 1 46 0 395 259 12 0 chr9 59942944 59943029 -57919598 - MER5A DNA MER1_type -81 108 23 349 221 131 69 chr9 59943176 59943321 -57919306 - L1ME3A LINE L1 -1 6169 6016 2335 84 3 3 chr9 59943352 59943651 -57918976 - AluY SINE Alu -12 299 1 32448 34 18 2 chr9 59943825 59949887 -57912740 - L1PA3 LINE L1 0 6155 1 233 284 120 36 chr9 59949895 59950059 -57912568 - L1ME3A LINE L1 -176 5994 5805 1091 226 9 0 chr9 59950059 59950280 -57912347 - MER58A DNA MER1_type 0 224 2 233 284 120 36 chr9 59950280 59950340 -57912287 - L1ME3A LINE L1 -365 5805 5751 1849 224 15 3 chr9 59950345 59950734 -57911893 - MLT1E2 LTR MaLR -2 624 231 242 291 50 33 chr9 59950750 59950819 -57911808 - L1ME3A LINE L1 -1127 5019 4953 2343 107 3 0 chr9 59950819 59951128 -57911499 - AluSx SINE Alu -2 310 1 242 291 50 33 chr9 59951128 59951240 -57911387 - L1ME3A LINE L1 -1193 4953 4835 355 370 160 8 chr9 59951769 59952282 -57910345 - L2 LINE L2 -686 2628 2038 395 261 23 15 chr9 59954623 59954753 -57907874 - MER94 DNA DNA -3 131 1 300 186 0 0 chr9 59955313 59955372 -57907255 + (CA)n Simple_repeat Simple_repeat 2 60 0 247 279 88 0 chr9 59955388 59955456 -57907171 - MIR SINE MIR -141 121 48 384 315 58 47 chr9 59956619 59956895 -57905732 - HAL1 LINE L1 0 2507 2229 183 162 0 0 chr9 59957749 59957786 -57904841 + (TG)n Simple_repeat Simple_repeat 2 38 0 423 0 0 0 chr9 59957813 59957860 -57904767 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1848 108 62 0 chr9 59957863 59958122 -57904505 - AluSq SINE Alu -37 276 2 575 263 223 11 chr9 59958144 59958418 -57904209 - HAL1 LINE L1 -1215 1292 961 2543 50 0 3 chr9 59958454 59958753 -57903874 + AluY SINE Alu 8 305 -6 4597 208 54 47 chr9 59958761 59959636 -57902991 - L1MD2 LINE L1 -22 6337 5470 2321 84 0 7 chr9 59959636 59959935 -57902692 - AluY SINE Alu -14 297 1 4597 208 54 47 chr9 59959935 59961383 -57901244 - L1MD2 LINE L1 -889 5470 3999 40434 33 26 2 chr9 59961392 59967395 -57895232 - L1PA2 LINE L1 -2 6153 3 537 263 5 15 chr9 59967395 59967593 -57895034 - L1MD2 LINE L1 -2138 4008 3813 28 29 0 0 chr9 59967736 59967771 -57894856 + AT_rich Low_complexity Low_complexity 1 35 0 599 185 1 0 chr9 59967771 59967906 -57894721 - AluJb SINE Alu -194 118 1 358 282 74 46 chr9 59968313 59968673 -57893954 - LTR16A1 LTR ERVL 0 457 65 870 263 40 18 chr9 59969601 59969875 -57892752 - LTR16C LTR ERVL -30 461 182 262 261 95 83 chr9 59970808 59970928 -57891699 + MIR SINE MIR 40 163 -99 2211 153 89 2 chr9 59970928 59970967 -57891660 - MSTA LTR MaLR -1 427 393 1778 158 24 17 chr9 59970967 59971258 -57891369 + AluSx SINE Alu 1 293 -19 2211 153 89 2 chr9 59971258 59971611 -57891016 - MSTA LTR MaLR -35 393 1 262 261 95 83 chr9 59971611 59971662 -57890965 + MIR SINE MIR 163 212 -50 245 171 0 0 chr9 59972235 59972276 -57890351 + MLT1I LTR MaLR 369 409 0 25 31 0 0 chr9 59972829 59972861 -57889766 + AT_rich Low_complexity Low_complexity 1 32 0 687 178 54 43 chr9 59973374 59973559 -57889068 + MER5A DNA MER1_type 2 188 -1 396 0 0 0 chr9 59973588 59973632 -57888995 + (A)n Simple_repeat Simple_repeat 1 44 0 201 320 0 27 chr9 59974732 59974807 -57887820 + L2 LINE L2 2904 2976 -338 500 298 40 0 chr9 59975319 59975470 -57887157 - MLT1H LTR MaLR -196 353 197 1831 197 67 0 chr9 59975472 59975945 -57886682 - MLT1C-int LTR MaLR -768 603 5 1041 213 111 73 chr9 59975949 59976399 -57886228 - MLT1C LTR MaLR 0 467 1 259 197 56 0 chr9 59976736 59976807 -57885820 - MLT1G1 LTR MaLR -4 563 489 738 304 56 18 chr9 59976851 59977137 -57885490 - MLT1G1 LTR MaLR -217 378 82 319 330 11 34 chr9 59977261 59977349 -57885278 + MER91A DNA MER1_type 70 155 -41 256 318 51 51 chr9 59977479 59977655 -57884972 + MIR SINE MIR 33 208 -54 234 0 0 0 chr9 59978618 59978644 -57883983 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 545 299 24 12 chr9 59978644 59978808 -57883819 - MIR SINE MIR -78 184 19 357 262 155 18 chr9 59979492 59979660 -57882967 - MIR SINE MIR -11 251 61 2091 128 0 30 chr9 59979843 59980135 -57882492 + AluSx SINE Alu 1 285 -27 228 86 0 0 chr9 59980135 59980170 -57882457 + (CATA)n Simple_repeat Simple_repeat 2 36 0 2091 128 0 30 chr9 59980170 59980182 -57882445 + AluSx SINE Alu 285 296 -16 1573 128 44 56 chr9 59980404 59980427 -57882200 - THE1C LTR MaLR -17 411 389 2371 89 3 0 chr9 59980427 59980729 -57881898 + AluSc SINE Alu 1 303 -6 1573 128 44 56 chr9 59980729 59981068 -57881559 - THE1C LTR MaLR -39 389 2 225 319 0 0 chr9 59981146 59981218 -57881409 + MLT1J2 LTR MaLR 133 204 -246 348 327 87 25 chr9 59981293 59981614 -57881013 - LTR16C LTR ERVL 0 491 151 331 239 43 0 chr9 59981848 59981940 -57880687 + MLT1J2 LTR MaLR 325 420 -30 753 236 47 19 chr9 59982441 59982699 -57879928 + L1ME4a LINE L1 5649 5913 -208 23 33 0 0 chr9 59982871 59982901 -57879726 + AT_rich Low_complexity Low_complexity 1 30 0 199 348 90 0 chr9 59983037 59983126 -57879501 + L2 LINE L2 2868 2964 -350 261 216 20 137 chr9 59983666 59983768 -57878859 + L2 LINE L2 3221 3310 -3 471 100 0 0 chr9 59984069 59984139 -57878488 + (TA)n Simple_repeat Simple_repeat 1 70 0 1206 163 67 0 chr9 59984936 59985145 -57877482 - MER58A DNA MER1_type 0 224 2 423 0 0 0 chr9 59985378 59985425 -57877202 + (TG)n Simple_repeat Simple_repeat 2 48 0 342 184 8 96 chr9 59986220 59986345 -57876282 - Charlie4 DNA MER1_type -36 1925 1812 561 279 52 10 chr9 59987168 59987418 -57875209 + L1ME3A LINE L1 5662 5914 -256 3941 196 47 41 chr9 59987440 59988702 -57873925 + L1MB8 LINE L1 4887 6172 -6 776 229 15 24 chr9 59988716 59988921 -57873706 + L1ME3A LINE L1 5945 6147 -23 1472 217 34 56 chr9 59988961 59989463 -57873164 + MLT1D LTR MaLR 1 491 -14 354 247 228 6 chr9 59991991 59992149 -57870478 + MIR SINE MIR 7 199 -63 201 273 58 83 chr9 59992347 59992404 -57870223 + L2 LINE L2 3183 3240 -73 671 304 71 28 chr9 59992404 59992796 -57869831 + MLT1I LTR MaLR 1 409 0 201 273 58 83 chr9 59992796 59992859 -57869768 + L2 LINE L2 3240 3300 -13 1565 169 0 102 chr9 59993286 59993629 -57868998 + AluJo SINE Alu 1 308 -4 21 36 0 0 chr9 59993937 59993965 -57868662 + AT_rich Low_complexity Low_complexity 1 28 0 198 0 0 0 chr9 59995064 59995086 -57867541 + (TG)n Simple_repeat Simple_repeat 2 23 0 193 320 0 0 chr9 59995096 59995146 -57867481 + L2 LINE L2 3262 3311 -2 2545 122 67 5 chr9 59995371 59995774 -57866853 + MSTA LTR MaLR 1 428 0 262 307 0 11 chr9 59998329 59998417 -57864210 + MER117 DNA MER1_type 16 102 -95 2166 139 19 19 chr9 59999025 59999399 -57863228 + THE1C LTR MaLR 2 375 0 428 226 139 107 chr9 59999487 59999635 -57862992 + LTR33A LTR ERVL 3 145 -378 1738 183 54 9 chr9 59999635 59999984 -57862643 + MLT1A1 LTR MaLR 1 365 0 428 226 139 107 chr9 59999984 60000145 -57862482 + LTR33A LTR ERVL 145 322 -201 22 0 0 0 chr9 60001617 60001639 -57860988 + AT_rich Low_complexity Low_complexity 1 22 0 417 281 75 20 chr9 60002035 60002181 -57860446 - MLT1K LTR MaLR -291 297 144 237 226 32 16 chr9 60002150 60002212 -57860415 - MLT1K LTR MaLR -346 242 180 * 236 211 13 0 chr9 60002299 60002375 -57860252 + (ATG)n Simple_repeat Simple_repeat 1 77 0 300 183 19 19 chr9 60002527 60002631 -57859996 + (TAA)n Simple_repeat Simple_repeat 1 104 0 246 290 21 103 chr9 60002664 60002809 -57859818 - MIR SINE MIR -101 161 29 5976 106 17 3 chr9 60002943 60003024 -57859603 + L1PA15 LINE L1 4685 4763 -1402 4087 97 0 2 chr9 60003024 60003579 -57859048 + MER41A LTR ERV1 1 554 0 5976 106 17 3 chr9 60003579 60004983 -57857644 + L1PA15 LINE L1 4763 6163 -2 1208 203 30 65 chr9 60005022 60005391 -57857236 + L1MB8 LINE L1 5809 6164 -14 23 0 0 0 chr9 60005391 60005414 -57857213 + AT_rich Low_complexity Low_complexity 1 23 0 780 188 26 47 chr9 60005614 60005806 -57856821 - MER3 DNA MER1_type 0 209 22 286 273 59 94 chr9 60005894 60006097 -57856530 + MLT1J2 LTR MaLR 259 409 0 330 287 132 18 chr9 60006140 60006307 -57856320 + L1ME4a LINE L1 4628 4813 -1333 416 296 126 54 chr9 60007494 60007547 -57855080 + L1ME4a LINE L1 5324 5372 -749 554 0 15 0 chr9 60007547 60007613 -57855014 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 416 296 126 54 chr9 60007613 60008299 -57854328 + L1ME4a LINE L1 5372 6116 -5 21 0 0 0 chr9 60008364 60008385 -57854242 + AT_rich Low_complexity Low_complexity 1 21 0 487 189 8 136 chr9 60008608 60008740 -57853887 + MER34 LTR ERV1 1 110 -432 357 235 143 0 chr9 60008759 60008857 -57853770 + LTR48B LTR ERV1 209 320 -324 306 248 56 113 chr9 60008825 60009144 -57853483 + LTR48B LTR ERV1 382 775 -12 * 2307 94 3 13 chr9 60009434 60009741 -57852886 + AluSx SINE Alu 1 304 -8 1102 177 166 47 chr9 60010573 60010935 -57851692 + LTR37A LTR ERV1 18 422 -4 337 163 19 3 chr9 60010974 60011044 -57851583 - MIR SINE MIR -57 151 78 542 300 45 27 chr9 60011193 60011413 -57851214 + MIR SINE MIR 29 252 -10 1733 146 122 19 chr9 60011419 60011740 -57850887 - MER93b LTR ERV1 -1 372 19 27 29 0 0 chr9 60011993 60012027 -57850600 + AT_rich Low_complexity Low_complexity 1 34 0 237 218 73 0 chr9 60012104 60012159 -57850468 + L2 LINE L2 3249 3307 -6 698 261 10 26 chr9 60012892 60013087 -57849540 + MER58C DNA MER1_type 23 214 -1 2288 83 0 13 chr9 60013132 60013432 -57849195 + AluSg SINE Alu 5 300 -10 23 105 0 0 chr9 60013468 60013554 -57849073 + AT_rich Low_complexity Low_complexity 1 86 0 315 271 139 0 chr9 60013577 60013706 -57848921 - MIR SINE MIR -31 231 85 1227 236 106 63 chr9 60013716 60014224 -57848403 - MER51C LTR ERV1 0 640 1 34 55 0 0 chr9 60014344 60014399 -57848228 + AT_rich Low_complexity Low_complexity 1 55 0 424 307 83 15 chr9 60014618 60014929 -57847698 - L1ME LINE L1 -5099 971 678 229 288 93 25 chr9 60016008 60016126 -57846501 + MIR SINE MIR 83 208 -54 634 176 0 40 chr9 60016202 60016327 -57846300 - FLAM_C SINE Alu -2 141 22 2239 228 6 6 chr9 60016354 60016824 -57845803 - MER74A LTR ERVL -88 470 1 2159 151 100 3 chr9 60017599 60017989 -57844638 - MSTA LTR MaLR 0 428 1 2407 113 34 3 chr9 60018528 60018881 -57843746 + THE1B LTR MaLR 1 364 0 745 180 87 13 chr9 60020260 60020410 -57842217 - MER45A DNA AcHobo 0 178 18 207 402 0 0 chr9 60021202 60021289 -57841338 - MIR SINE MIR -25 237 151 312 295 76 0 chr9 60021459 60021564 -57841063 - MIR SINE MIR -98 164 52 333 290 75 21 chr9 60021617 60021774 -57840853 + MIR SINE MIR 33 200 -62 21 36 0 0 chr9 60022832 60022860 -57839767 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr9 60023751 60023772 -57838855 + AT_rich Low_complexity Low_complexity 1 21 0 210 118 0 0 chr9 60023891 60023925 -57838702 + (CA)n Simple_repeat Simple_repeat 1 34 0 658 222 25 35 chr9 60023962 60024165 -57838462 + L1MD3 LINE L1 7795 7995 0 439 244 89 24 chr9 60024362 60024485 -57838142 + MER63 DNA MER1_type 2 758 -78 2210 174 34 0 chr9 60025405 60025790 -57836837 + MSTB LTR MaLR 1 398 -28 2061 118 34 7 chr9 60025790 60026087 -57836540 - AluSg1 SINE Alu 0 309 5 268 236 27 73 chr9 60026335 60026445 -57836182 - MER112 DNA MER1_type -48 212 108 465 279 40 20 chr9 60026618 60026885 -57835742 - L1M2 LINE L1 -731 5453 5254 439 277 118 12 chr9 60026963 60027260 -57835367 - L1M2 LINE L1 -1071 5075 4742 2255 173 26 81 chr9 60027281 60027826 -57834801 + L1MD2 LINE L1 5806 6320 -39 1298 260 43 8 chr9 60027838 60028354 -57834273 - L1M4 LINE L1 -1598 4548 4015 429 238 0 0 chr9 60028443 60028523 -57834104 + Tigger3(Golem) DNA MER2_type 1 80 -2949 460 234 21 0 chr9 60028636 60028730 -57833897 + Tigger3(Golem) DNA MER2_type 2934 3029 0 345 303 59 33 chr9 60028777 60029257 -57833370 - L1MCc LINE L1 -4958 1465 1183 1303 184 31 0 chr9 60029633 60029889 -57832738 + L1MB5 LINE L1 5303 5566 -608 420 20 0 0 chr9 60029927 60029976 -57832651 + (TG)n Simple_repeat Simple_repeat 2 50 0 2386 170 37 0 chr9 60029977 60030435 -57832192 + L1MB5 LINE L1 5700 6174 0 450 266 18 0 chr9 60030723 60030832 -57831795 + L2 LINE L2 3202 3312 -1 180 383 17 0 chr9 60031789 60031849 -57830778 + L2 LINE L2 143 203 -3111 44 35 0 0 chr9 60032725 60032783 -57829844 + AT_rich Low_complexity Low_complexity 1 58 0 459 244 78 0 chr9 60033491 60033606 -57829021 + MER46C DNA MER2_type 167 290 -48 29 47 0 0 chr9 60033850 60033893 -57828734 + AT_rich Low_complexity Low_complexity 1 43 0 250 257 70 70 chr9 60034598 60034812 -57827815 + L1ME4a LINE L1 5564 5777 -344 548 304 31 55 chr9 60034838 60035095 -57827532 + MIR SINE MIR 11 261 -1 356 306 43 61 chr9 60035099 60035245 -57827382 + L1ME4a LINE L1 5791 5931 -190 1135 115 28 22 chr9 60035245 60035427 -57827200 + L1PA10 LINE L1 5981 6163 -5 356 306 43 61 chr9 60035427 60035558 -57827069 + L1ME4a LINE L1 5931 6063 -58 1508 209 7 10 chr9 60035675 60035976 -57826651 + AluJo SINE Alu 1 300 -12 256 349 96 35 chr9 60035999 60036197 -57826430 - L2 LINE L2 -211 3061 2852 29 0 0 0 chr9 60036399 60036428 -57826199 + AT_rich Low_complexity Low_complexity 1 29 0 1400 123 25 56 chr9 60036430 60036714 -57825913 - L1MA5A LINE L1 0 6297 6023 1662 76 9 0 chr9 60036852 60037075 -57825552 - L1PA12 LINE L1 -2 6166 5942 221 308 26 0 chr9 60037579 60037657 -57824970 - MIR SINE MIR -56 206 127 183 80 0 0 chr9 60038752 60038777 -57823850 + (CATG)n Simple_repeat Simple_repeat 2 26 0 306 50 0 0 chr9 60039192 60039232 -57823395 + (TG)n Simple_repeat Simple_repeat 2 41 0 311 311 8 0 chr9 60039945 60040067 -57822560 + (TA)n Simple_repeat Simple_repeat 1 123 0 2560 68 0 0 chr9 60040572 60040883 -57821744 + AluY SINE Alu 1 311 0 33 43 0 0 chr9 60041402 60041449 -57821178 + AT_rich Low_complexity Low_complexity 1 47 0 26 50 0 0 chr9 60041517 60041557 -57821070 + AT_rich Low_complexity Low_complexity 1 40 0 24 32 0 0 chr9 60041573 60041604 -57821023 + AT_rich Low_complexity Low_complexity 1 31 0 236 175 0 0 chr9 60041850 60041890 -57820737 + MLT1H LTR MaLR 3 42 -507 744 163 8 0 chr9 60042073 60042368 -57820259 + FLAM_C SINE Alu 2 297 0 188 0 0 69 chr9 60042601 60042630 -57819997 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3967 97 20 87 chr9 60043388 60044100 -57818527 + MER4A LTR ERV1 1 664 0 350 348 25 6 chr9 60044104 60044265 -57818362 + L1ME2 LINE L1 92 255 -6141 753 261 95 88 chr9 60045070 60045148 -57817479 + L1ME2 LINE L1 1453 1529 -4867 13303 124 54 48 chr9 60045148 60047550 -57815077 - Tigger1 DNA MER2_type -1 2417 1 753 261 95 88 chr9 60047550 60048343 -57814284 + L1ME2 LINE L1 1529 2330 -4066 4722 271 57 8 chr9 60048353 60050452 -57812175 + L1ME2 LINE L1 2197 4398 -1817 281 229 28 18 chr9 60050447 60050556 -57812071 + L1ME2 LINE L1 5202 5311 -904 * 252 195 85 0 chr9 60050562 60050644 -57811983 + L1ME2 LINE L1 5368 5456 -777 884 115 0 0 chr9 60050822 60050952 -57811675 - L1PA7 LINE L1 -6 6148 6019 1628 277 78 14 chr9 60050966 60051701 -57810926 + L1ME2 LINE L1 5456 6401 -2 247 297 54 0 chr9 60051702 60051776 -57810851 - L2 LINE L2 -614 2700 2623 725 186 0 8 chr9 60052179 60052308 -57810319 - FRAM SINE Alu -31 145 18 291 158 0 70 chr9 60052340 60052397 -57810230 - Alu SINE Alu -249 53 1 256 272 19 10 chr9 60053145 60053248 -57809379 + GA-rich Low_complexity Low_complexity 1 104 0 488 285 70 35 chr9 60053281 60053481 -57809146 - MIR SINE MIR -10 252 46 596 130 0 0 chr9 60053675 60053775 -57808852 + L1MA6 LINE L1 6201 6300 0 663 206 0 43 chr9 60053843 60053984 -57808643 + MER5A DNA MER1_type 5 139 -50 1262 231 42 30 chr9 60054004 60054407 -57808220 - MLT1D LTR MaLR -46 459 52 245 215 25 51 chr9 60054415 60054494 -57808133 + MER5A DNA MER1_type 113 189 0 3334 73 0 7 chr9 60056063 60056514 -57806113 + LTR7 LTR ERV1 1 448 -2 18180 90 24 16 chr9 60056516 60059360 -57803267 + HERVH LTR ERV1 1 2867 -4846 1554 118 4 8 chr9 60059462 60059725 -57802902 + HERVH LTR ERV1 3732 3993 -3720 3995 147 8 1 chr9 60059727 60060385 -57802242 + HERVH LTR ERV1 4488 5149 -2564 1297 139 19 0 chr9 60060386 60060602 -57802025 + HERVH LTR ERV1 5600 5819 -1894 2377 75 50 13 chr9 60060602 60060978 -57801649 + HERVH LTR ERV1 7324 7713 0 3462 58 5 7 chr9 60060978 60061427 -57801200 + LTR7 LTR ERV1 1 448 -2 6700 51 7 8 chr9 60061650 60062515 -57800112 + L1PA5 LINE L1 5285 6148 -6 24 0 0 0 chr9 60062515 60062539 -57800088 + AT_rich Low_complexity Low_complexity 1 24 0 228 275 28 120 chr9 60062578 60062720 -57799907 - MIR3 SINE MIR -78 130 2 28 91 0 0 chr9 60063062 60063139 -57799488 + AT_rich Low_complexity Low_complexity 1 77 0 2332 81 0 0 chr9 60063268 60063563 -57799064 + AluY SINE Alu 1 295 -16 541 204 27 89 chr9 60063665 60063822 -57798805 - MIR SINE MIR -71 137 12 1992 226 78 21 chr9 60063980 60064541 -57798086 - L1ME1 LINE L1 -25 6141 5549 255 246 29 0 chr9 60064653 60064722 -57797905 + MIR SINE MIR 126 196 -66 434 111 0 0 chr9 60066345 60066408 -57796219 - L1MA1 LINE L1 -92 6210 6148 1919 135 0 3 chr9 60066418 60066721 -57795906 - THE1B LTR MaLR 0 364 63 306 326 72 7 chr9 60067872 60068010 -57794617 + L1M2c LINE L1 401 927 -6639 3108 224 33 29 chr9 60068239 60069368 -57793259 + L1M2c LINE L1 3299 4435 -3130 328 250 11 11 chr9 60069477 60069569 -57793058 - Tigger4(Zombi) DNA MER2_type -2639 92 1 6770 61 15 0 chr9 60070094 60071181 -57791446 + L1PA7 LINE L1 5047 6150 -4 22 0 0 0 chr9 60071358 60071380 -57791247 + AT_rich Low_complexity Low_complexity 1 22 0 264 299 140 25 chr9 60071812 60071969 -57790658 - MIR3 SINE MIR -30 178 4 2048 226 71 54 chr9 60072470 60072861 -57789766 - L1ME2 LINE L1 -1 6163 5780 2143 110 30 28 chr9 60072861 60073224 -57789403 + THE1B LTR MaLR 1 364 0 2048 226 71 54 chr9 60073224 60073611 -57789016 - L1ME2 LINE L1 -384 5780 5372 2450 87 0 0 chr9 60073612 60073923 -57788704 + AluY SINE Alu 1 311 0 32 43 0 0 chr9 60074442 60074488 -57788139 + AT_rich Low_complexity Low_complexity 1 46 0 203 208 19 0 chr9 60074757 60074810 -57787817 + (TA)n Simple_repeat Simple_repeat 1 54 0 1179 206 45 3 chr9 60074856 60075167 -57787460 - MER33 DNA MER1_type 0 324 1 215 200 0 18 chr9 60075875 60075930 -57786697 + GA-rich Low_complexity Low_complexity 3 56 0 702 307 84 56 chr9 60076001 60076431 -57786196 + MER115 DNA AcHobo 2 443 -250 652 205 161 33 chr9 60077120 60077466 -57785161 - MLT1E1 LTR MaLR -249 387 1 378 286 9 18 chr9 60079818 60079930 -57782697 - MIR SINE MIR -126 136 26 562 215 64 52 chr9 60080001 60080234 -57782393 + MER106A DNA MER1_type 1 236 0 219 208 83 0 chr9 60081248 60081296 -57781331 + L2 LINE L2 3147 3198 -74 324 0 0 0 chr9 60081319 60081355 -57781272 + (CA)n Simple_repeat Simple_repeat 2 37 0 1272 247 63 18 chr9 60081358 60081755 -57780872 - MLT1C LTR MaLR -52 415 1 468 183 0 0 chr9 60081797 60081890 -57780737 + GA-rich Low_complexity Low_complexity 2 94 0 22 70 0 0 chr9 60081891 60081934 -57780693 + AT_rich Low_complexity Low_complexity 1 43 0 241 229 10 10 chr9 60082282 60082378 -57780249 + GA-rich Low_complexity Low_complexity 2 97 0 2499 98 6 0 chr9 60083035 60083393 -57779234 - L1PA10 LINE L1 -2 6166 5807 337 292 240 10 chr9 60083434 60083626 -57779001 + MIR SINE MIR 21 256 -6 1808 202 111 15 chr9 60084387 60084848 -57777779 + MLT1D LTR MaLR 1 505 0 459 60 15 75 chr9 60084920 60085053 -57777574 + (TA)n Simple_repeat Simple_repeat 1 125 0 337 231 33 11 chr9 60085053 60085144 -57777483 - L1MC4 LINE L1 -1338 6704 6612 2057 122 0 3 chr9 60085152 60085439 -57777188 - AluSx SINE Alu -26 286 1 2045 124 7 16 chr9 60086066 60086373 -57776254 - AluSx SINE Alu -8 304 1 279 212 30 15 chr9 60086410 60086476 -57776151 + CT-rich Low_complexity Low_complexity 3 69 0 325 198 22 11 chr9 60086678 60086769 -57775858 + CT-rich Low_complexity Low_complexity 1 92 0 1149 90 20 50 chr9 60086846 60087020 -57775607 + HSMAR2 DNA Mariner 1108 1277 -25 2279 91 0 7 chr9 60087020 60087317 -57775310 - AluSq SINE Alu -18 295 1 1149 90 20 50 chr9 60087317 60087342 -57775285 + HSMAR2 DNA Mariner 1277 1301 -1 2738 240 135 51 chr9 60087347 60088856 -57773771 - HAL1 LINE L1 -828 1679 44 335 343 100 49 chr9 60089549 60090309 -57772318 + L2 LINE L2 231 1029 -2285 342 304 55 35 chr9 60091159 60091360 -57771267 - MIR SINE MIR -1 261 57 421 316 161 36 chr9 60091685 60092268 -57770359 + L2 LINE L2 1356 2011 -1303 1301 172 35 41 chr9 60092495 60092809 -57769818 + L1ME3 LINE L1 5850 6161 -1 396 0 0 0 chr9 60093044 60093088 -57769539 + (TA)n Simple_repeat Simple_repeat 2 45 0 233 306 18 9 chr9 60093280 60093391 -57769236 + (TA)n Simple_repeat Simple_repeat 2 113 0 302 261 0 0 chr9 60094422 60094487 -57768140 + HAL1 LINE L1 9 73 -2434 1766 257 43 33 chr9 60094680 60095462 -57767165 + L1ME1 LINE L1 5360 6334 0 405 270 106 16 chr9 60096495 60096683 -57765944 - MIR SINE MIR -28 234 32 844 142 73 41 chr9 60096879 60097125 -57765502 + Charlie5 DNA MER1_type 2363 2616 0 2258 68 0 48 chr9 60098986 60099296 -57763331 + AluY SINE Alu 1 295 -16 278 284 0 0 chr9 60099360 60099427 -57763200 - L2 LINE L2 -663 2651 2585 2641 212 146 85 chr9 60099427 60101005 -57761622 + L1M4 LINE L1 3576 5250 -896 302 242 0 0 chr9 60101109 60101175 -57761452 - MER3 DNA MER1_type -103 106 41 493 264 43 25 chr9 60101262 60101425 -57761202 - MER103 DNA DNA 0 166 1 5274 112 90 123 chr9 60101487 60103081 -57759546 + pTR5 LTR ERV1 743 2438 0 230 250 0 0 chr9 60103174 60103222 -57759405 + L1M4 LINE L1 7 54 -6488 383 197 0 0 chr9 60103354 60103430 -57759197 + MER58 DNA MER1_type 2345 2420 0 182 284 157 10 chr9 60104086 60104188 -57758439 + L2 LINE L2 3197 3313 0 2063 148 31 14 chr9 60105703 60106061 -57756566 - THE1B LTR MaLR 0 364 1 213 145 81 16 chr9 60106207 60106269 -57756358 + (TCTA)n Simple_repeat Simple_repeat 4 69 0 181 220 20 40 chr9 60107489 60107539 -57755088 + L2 LINE L2 2266 2314 -1000 231 213 0 0 chr9 60108518 60108565 -57754062 + GA-rich Low_complexity Low_complexity 3 49 0 237 179 0 0 chr9 60109155 60109194 -57753433 + 5S rRNA rRNA 1 39 -82 284 250 12 12 chr9 60109960 60110040 -57752587 + L1ME1 LINE L1 5972 6051 -115 439 264 16 16 chr9 60111161 60111290 -57751337 - MIR SINE MIR -34 228 100 21 36 0 0 chr9 60111394 60111422 -57751205 + AT_rich Low_complexity Low_complexity 1 28 0 2312 94 0 3 chr9 60112654 60112953 -57749674 - AluY SINE Alu -13 298 1 341 301 85 85 chr9 60113340 60113646 -57748981 - L2 LINE L2 0 3272 2967 212 344 94 31 chr9 60113652 60113780 -57748847 - MIR SINE MIR -90 172 37 531 96 0 0 chr9 60116939 60117012 -57745615 - L1PA16 LINE L1 -8 6158 6086 215 220 11 33 chr9 60117266 60117357 -57745270 + (TTA)n Simple_repeat Simple_repeat 1 89 0 397 333 134 57 chr9 60117843 60118402 -57744225 - L3 LINE CR1 -1 1576 975 477 0 0 0 chr9 60119601 60119654 -57742973 + (TG)n Simple_repeat Simple_repeat 2 54 0 2090 125 0 3 chr9 60119735 60120031 -57742596 + AluSx SINE Alu 1 295 -17 387 280 55 4 chr9 60120091 60120299 -57742328 - L2 LINE L2 0 3313 3021 279 175 0 0 chr9 60120737 60120794 -57741833 + (CATA)n Simple_repeat Simple_repeat 2 58 0 241 344 29 20 chr9 60122672 60122785 -57739842 - MIR SINE MIR -75 133 38 1646 177 0 7 chr9 60122872 60123143 -57739484 + AluJb SINE Alu 23 291 -21 192 279 0 0 chr9 60123299 60123342 -57739285 - L2 LINE L2 -270 3043 3001 319 224 119 67 chr9 60123783 60123917 -57738710 - MIR3 SINE MIR -10 198 58 275 250 190 9 chr9 60124441 60124557 -57738070 + MIR SINE MIR 52 188 -74 421 306 22 8 chr9 60125698 60125832 -57736795 - L2 LINE L2 -4 3309 3174 2086 221 22 20 chr9 60126263 60126555 -57736072 + MER82 DNA MER2_type 136 431 -222 1835 102 12 4 chr9 60126555 60126809 -57735818 - AluSq SINE Alu -21 292 37 2086 221 22 20 chr9 60126809 60127009 -57735618 + MER82 DNA MER2_type 431 629 -24 2018 194 45 18 chr9 60127006 60127455 -57735172 - MER74A LTR ERVL -70 488 28 * 456 219 117 90 chr9 60127823 60128079 -57734548 + L1MC5 LINE L1 7664 7926 -35 2140 123 0 0 chr9 60130327 60130612 -57732015 - AluSq SINE Alu -15 298 14 2605 123 23 34 chr9 60131757 60132196 -57730431 + Tigger2a DNA MER2_type 1 434 0 194 273 15 30 chr9 60132257 60132323 -57730304 - MER5A DNA MER1_type 0 189 125 27 49 0 0 chr9 60135374 60135415 -57727212 + AT_rich Low_complexity Low_complexity 1 41 0 209 105 0 26 chr9 60135432 60135470 -57727157 + (TA)n Simple_repeat Simple_repeat 1 37 0 387 301 71 46 chr9 60136484 60136932 -57725695 - L2 LINE L2 -271 3001 2531 521 136 11 34 chr9 60138408 60138496 -57724131 + FLAM SINE Alu 40 125 -18 252 184 0 0 chr9 60138501 60138550 -57724077 + (CA)n Simple_repeat Simple_repeat 2 50 0 2285 163 39 2 chr9 60138861 60139272 -57723355 - MSTB LTR MaLR 0 426 1 180 97 0 0 chr9 60139338 60139369 -57723258 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 529 322 29 29 chr9 60139837 60140011 -57722616 + MIR3 SINE MIR 30 203 -5 378 264 19 28 chr9 60141109 60141215 -57721412 - MIR SINE MIR -102 160 56 280 355 117 30 chr9 60141246 60141893 -57720734 + L2 LINE L2 2111 2843 -429 2666 88 6 0 chr9 60141893 60142246 -57720381 + THE1A LTR MaLR 1 355 0 280 355 117 30 chr9 60142246 60142401 -57720226 + L2 LINE L2 2843 2983 -289 461 267 9 0 chr9 60142629 60142745 -57719882 - MLT1D LTR MaLR 0 505 389 208 233 0 33 chr9 60142774 60142834 -57719793 + MIR SINE MIR 108 165 -97 1068 196 112 3 chr9 60143010 60143296 -57719331 + MER33 DNA MER1_type 5 321 -3 348 277 105 81 chr9 60143328 60143787 -57718840 - MLT1H LTR MaLR -1 548 79 441 0 0 0 chr9 60144236 60144285 -57718342 + (TG)n Simple_repeat Simple_repeat 1 49 0 562 280 121 0 chr9 60144296 60144478 -57718149 + MIR SINE MIR 21 224 -38 455 246 92 35 chr9 60146815 60146957 -57715670 - L2 LINE L2 -1 3312 3163 353 318 33 70 chr9 60147024 60147266 -57715361 + L2 LINE L2 2894 3126 -146 1258 211 85 15 chr9 60147412 60147811 -57714816 - Charlie4a DNA MER1_type -20 488 62 186 43 0 0 chr9 60148331 60148354 -57714273 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 382 247 140 27 chr9 60148464 60148614 -57714013 + MIR3 SINE MIR 38 204 -4 1060 134 26 5 chr9 60148944 60149138 -57713489 + L1MB7 LINE L1 5971 6168 -16 388 287 44 0 chr9 60150425 60150561 -57712066 + HAL1 LINE L1 1592 1733 -774 2295 102 7 3 chr9 60150687 60150991 -57711636 + AluSc SINE Alu 2 306 -3 234 0 0 0 chr9 60152616 60152642 -57709985 + (CAA)n Simple_repeat Simple_repeat 2 27 0 325 262 0 25 chr9 60152815 60152937 -57709690 - HsTC2 DNA Tc2 -1772 126 8 473 235 152 10 chr9 60153055 60153262 -57709365 + MIR SINE MIR 20 261 -1 362 308 45 23 chr9 60153291 60153424 -57709203 - MIR3 SINE MIR -65 143 8 1121 250 12 4 chr9 60153772 60153890 -57708737 - AluJb SINE Alu -69 243 127 180 0 0 0 chr9 60153890 60153910 -57708717 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1121 250 12 4 chr9 60153910 60154031 -57708596 - AluJb SINE Alu -185 127 2 528 330 0 15 chr9 60154131 60154337 -57708290 - MER63A DNA MER1_type -7 203 1 180 0 0 0 chr9 60154396 60154416 -57708211 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 246 291 10 78 chr9 60154525 60154628 -57707999 - L2 LINE L2 0 3272 3177 2235 107 3 0 chr9 60154814 60155103 -57707524 + AluSx SINE Alu 1 290 -22 23 0 0 0 chr9 60156272 60156295 -57706332 + AT_rich Low_complexity Low_complexity 1 23 0 4110 112 58 41 chr9 60156355 60157061 -57705566 + L1PA16 LINE L1 5438 6155 -11 1049 88 0 33 chr9 60157066 60157247 -57705380 + (GAAA)n Simple_repeat Simple_repeat 2 176 0 199 314 66 66 chr9 60157269 60157406 -57705221 - L2 LINE L2 -222 3050 2914 329 228 8 98 chr9 60158970 60159093 -57703534 + MIR3 SINE MIR 96 207 -1 300 200 0 0 chr9 60159761 60159826 -57702801 + (TA)n Simple_repeat Simple_repeat 1 65 0 800 305 13 17 chr9 60159967 60160181 -57702446 - MER20B DNA MER1_type -306 477 263 3985 160 106 3 chr9 60160181 60160930 -57701697 - LTR1B LTR ERV1 0 826 1 800 305 13 17 chr9 60160930 60161017 -57701610 - MER20B DNA MER1_type -520 263 177 1031 166 48 10 chr9 60161017 60161263 -57701364 + MLT1C LTR MaLR 1 289 -138 1081 241 84 34 chr9 60162511 60163237 -57699390 - MER21B LTR ERV1 -52 811 1 2568 228 99 13 chr9 60163242 60164001 -57698626 - MER97a DNA MER1_type? -70 824 1 334 233 105 0 chr9 60164283 60164369 -57698258 - MIR SINE MIR -111 151 57 877 277 52 22 chr9 60164655 60165056 -57697571 + L1ME4a LINE L1 5504 5916 -205 244 116 0 253 chr9 60165198 60165293 -57697334 - MER58 DNA MER1_type -31 2389 2319 1753 181 3 3 chr9 60166268 60166550 -57696077 + AluJb SINE Alu 5 286 -26 2230 129 3 0 chr9 60166556 60166867 -57695760 + AluSx SINE Alu 1 312 0 1672 201 32 86 chr9 60167357 60167924 -57694703 - MLT1F LTR MaLR -2 540 5 821 161 26 91 chr9 60168123 60168318 -57694309 + MLT1A2 LTR MaLR 1 180 -194 345 24 0 0 chr9 60168318 60168360 -57694267 + (TC)n Simple_repeat Simple_repeat 1 42 0 821 161 26 91 chr9 60168360 60168394 -57694233 + MLT1A2 LTR MaLR 180 215 -159 4138 215 48 62 chr9 60168403 60169274 -57693353 - L1M4c LINE L1 -2708 3936 3055 456 51 0 0 chr9 60169274 60169333 -57693294 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 4138 215 48 62 chr9 60169333 60170795 -57691832 - L1M4c LINE L1 -3589 3055 1575 618 11 56 0 chr9 60170795 60170884 -57691743 + (TAGA)n Simple_repeat Simple_repeat 4 97 0 4138 215 48 62 chr9 60170884 60171321 -57691306 - L1M4c LINE L1 -5069 1575 1134 2173 111 21 0 chr9 60171321 60171610 -57691017 - AluSx SINE Alu -17 295 1 4138 215 48 62 chr9 60171610 60172142 -57690485 - L1M4c LINE L1 -5510 1134 614 307 247 199 12 chr9 60172314 60172480 -57690147 + L2 LINE L2 2989 3185 -128 198 232 0 122 chr9 60172558 60172640 -57689987 + L2 LINE L2 3239 3310 -3 1685 189 42 3 chr9 60172953 60173287 -57689340 - MER7A DNA MER2_type 0 346 2 22 0 0 0 chr9 60173287 60173309 -57689318 + AT_rich Low_complexity Low_complexity 1 22 0 211 342 0 0 chr9 60174702 60174781 -57687846 + (TG)n Simple_repeat Simple_repeat 2 80 0 388 303 65 32 chr9 60175592 60175777 -57686850 - MIR SINE MIR -19 243 53 27 49 0 0 chr9 60176249 60176290 -57686337 + AT_rich Low_complexity Low_complexity 1 41 0 22 56 0 0 chr9 60176505 60176541 -57686086 + AT_rich Low_complexity Low_complexity 1 36 0 2094 156 13 8 chr9 60176636 60177009 -57685618 - THE1C LTR MaLR 0 375 1 2949 217 61 25 chr9 60177108 60177874 -57684753 - MER21B LTR ERV1 -69 794 1 1871 125 20 38 chr9 60179104 60179447 -57683180 + MLT1B LTR MaLR 53 389 -1 218 352 44 0 chr9 60179455 60179546 -57683081 - MIR SINE MIR -166 96 2 2191 91 0 56 chr9 60179713 60180033 -57682594 - AluSx SINE Alu -10 302 1 2168 103 35 0 chr9 60180411 60180693 -57681934 + AluSx SINE Alu 5 296 -16 377 282 12 43 chr9 60181005 60181168 -57681459 + MLT1J2 LTR MaLR 52 209 -241 181 278 9 9 chr9 60181170 60181278 -57681349 + CT-rich Low_complexity Low_complexity 1 108 0 378 252 71 58 chr9 60181308 60181463 -57681164 + MLT1J2 LTR MaLR 267 423 -27 578 226 181 20 chr9 60181699 60181898 -57680729 - MIR SINE MIR -11 251 21 324 335 119 0 chr9 60183901 60184077 -57678550 + MIR SINE MIR 44 240 -22 856 236 51 0 chr9 60184332 60184527 -57678100 - MER58A DNA MER1_type -16 208 4 1128 165 42 31 chr9 60185783 60186044 -57676583 + L1MC3 LINE L1 7480 7743 -42 1171 194 131 72 chr9 60186963 60187575 -57675052 - MER114 LTR ERV 0 648 1 26 50 0 0 chr9 60187818 60187858 -57674769 + AT_rich Low_complexity Low_complexity 1 40 0 21 36 0 0 chr9 60187926 60187954 -57674673 + AT_rich Low_complexity Low_complexity 1 28 0 2116 123 73 3 chr9 60189039 60189379 -57673248 + THE1B LTR MaLR 1 364 0 21 57 0 0 chr9 60189504 60189539 -57673088 + AT_rich Low_complexity Low_complexity 1 35 0 2229 122 0 0 chr9 60190002 60190313 -57672314 - AluSq SINE Alu 0 313 3 637 272 155 30 chr9 60192260 60192687 -57669940 + L1ME3A LINE L1 5663 6142 -28 235 227 0 0 chr9 60193008 60193052 -57669575 - MER5A DNA MER1_type -86 103 60 245 175 35 18 chr9 60193361 60193418 -57669209 + GA-rich Low_complexity Low_complexity 4 61 0 21 0 0 0 chr9 60193659 60193680 -57668947 + AT_rich Low_complexity Low_complexity 1 21 0 1878 157 14 24 chr9 60193875 60194244 -57668383 + MLT2D LTR ERVL 1 365 -49 242 253 48 12 chr9 60194264 60194347 -57668280 + (TATATG)n Simple_repeat Simple_repeat 4 89 0 370 97 0 0 chr9 60194348 60194403 -57668224 + MLT2C1 LTR ERVL 349 397 0 321 68 0 0 chr9 60195726 60195770 -57666857 + (TGAA)n Simple_repeat Simple_repeat 1 44 0 2186 114 17 0 chr9 60196024 60196322 -57666305 + AluSx SINE Alu 1 303 -9 5836 22 0 1 chr9 60196717 60197428 -57665199 - L1HS LINE L1 0 6155 5446 2480 30 8 0 chr9 60197422 60197814 -57664813 + L1P2 LINE L1 5074 5467 -688 * 225 154 0 0 chr9 60197909 60197948 -57664679 + (CAT)n Simple_repeat Simple_repeat 1 39 0 402 331 72 17 chr9 60197996 60198177 -57664450 - MIR SINE MIR -49 213 23 29188 32 18 1 chr9 60198464 60203901 -57658726 - L1P1 LINE L1 -595 5560 1 1470 175 7 16 chr9 60205418 60205726 -57656901 + L1 LINE L1 4042 4346 -1800 327 278 41 0 chr9 60206106 60206203 -57656424 - L1MC4 LINE L1 -1329 6713 6613 202 310 18 29 chr9 60206380 60206502 -57656125 + CT-rich Low_complexity Low_complexity 2 123 -47 2802 16 0 0 chr9 60206502 60206811 -57655816 - AluY SINE Alu -2 309 1 202 310 18 29 chr9 60206811 60206859 -57655768 + CT-rich Low_complexity Low_complexity 123 170 0 315 0 0 0 chr9 60207599 60207634 -57654993 + (CA)n Simple_repeat Simple_repeat 2 36 0 187 184 0 26 chr9 60207810 60207848 -57654779 - L2 LINE L2 0 3272 3236 311 252 67 104 chr9 60208762 60208897 -57653730 + L2 LINE L2 3139 3268 -4 345 228 114 16 chr9 60210135 60210258 -57652369 + MIR SINE MIR 80 214 -48 318 345 67 75 chr9 60211120 60211613 -57651014 - L1M2 LINE L1 -5711 1138 650 2288 112 0 3 chr9 60213114 60213427 -57649200 + AluSx SINE Alu 1 312 0 513 248 167 59 chr9 60213510 60213917 -57648710 - MLT1H LTR MaLR -2 547 97 931 186 4 62 chr9 60214109 60214335 -57648292 + MER20 DNA MER1_type 7 219 0 1467 185 32 29 chr9 60216195 60216503 -57646124 - AluJb SINE Alu -3 309 1 318 175 16 0 chr9 60216597 60216660 -57645967 + MLT1E1 LTR MaLR 1 64 -590 4292 230 55 32 chr9 60217161 60219394 -57643233 - L1ME1 LINE L1 -4 6162 3881 1746 166 10 10 chr9 60219394 60219696 -57642931 - AluJb SINE Alu -10 302 1 4292 230 55 32 chr9 60219696 60219738 -57642889 - L1ME1 LINE L1 -2285 3881 3841 689 267 26 63 chr9 60219775 60220045 -57642582 - MLT1H1 LTR MaLR -289 266 7 1674 171 91 29 chr9 60220371 60220899 -57641728 - MLT2A2 LTR ERVL 0 554 1 256 349 158 14 chr9 60220905 60221051 -57641576 - MIR SINE MIR -71 191 25 277 330 68 31 chr9 60221122 60221313 -57641314 + LTR16C LTR ERVL 72 269 -222 910 215 177 0 chr9 60222491 60222751 -57639876 + MER58B DNA MER1_type 33 338 -3 21 57 0 0 chr9 60222958 60222993 -57639634 + AT_rich Low_complexity Low_complexity 1 35 0 2134 109 7 0 chr9 60223878 60224172 -57638455 + AluSc SINE Alu 1 296 -13 797 198 73 6 chr9 60225786 60225963 -57636664 + MER5A DNA MER1_type 1 189 0 233 331 14 43 chr9 60226080 60226143 -57636484 + MER93a LTR ERV1 63 126 -276 1956 168 10 0 chr9 60226143 60226452 -57636175 + AluSx SINE Alu 1 312 0 233 331 14 43 chr9 60226452 60226527 -57636100 + MER93a LTR ERV1 126 197 -205 3519 131 16 6 chr9 60226537 60227227 -57635400 - L1P LINE L1 -735 5426 4729 851 180 115 0 chr9 60227227 60227410 -57635217 - MSTA LTR MaLR -224 204 1 240 216 0 0 chr9 60227591 60227642 -57634985 - MSTA LTR MaLR -377 51 1 746 252 93 4 chr9 60228766 60228992 -57633635 - MIR SINE MIR -2 260 15 806 56 0 0 chr9 60229576 60229683 -57632944 - L1PA5 LINE L1 -202 5952 5846 2976 145 48 9 chr9 60229685 60230230 -57632397 - L1MB7 LINE L1 -77 6107 5542 360 0 0 0 chr9 60230433 60230473 -57632154 + (TG)n Simple_repeat Simple_repeat 1 40 0 207 320 0 0 chr9 60230759 60230837 -57631790 + (TATATG)n Simple_repeat Simple_repeat 2 79 0 1032 198 12 16 chr9 60231037 60231279 -57631348 - MER96B DNA MER1_type? -175 242 2 437 191 26 40 chr9 60232155 60232307 -57630320 - MER103 DNA DNA 0 166 17 684 276 65 95 chr9 60232325 60232895 -57629732 - MLT1G LTR MaLR -13 554 2 425 304 38 32 chr9 60233766 60233924 -57628703 - MIR3 SINE MIR -20 188 30 231 191 0 0 chr9 60233936 60233978 -57628649 + L2 LINE L2 3262 3303 -10 331 264 43 93 chr9 60234132 60234272 -57628355 + L2 LINE L2 3140 3272 0 1405 140 16 20 chr9 60234393 60234643 -57627984 + L1MC1 LINE L1 6085 6333 0 2025 99 0 4 chr9 60235461 60235724 -57626903 - AluY SINE Alu -14 297 36 2192 197 42 34 chr9 60235963 60236661 -57625966 - LTR27 LTR ERV1 0 636 2 267 114 0 0 chr9 60236838 60236882 -57625745 + (A)n Simple_repeat Simple_repeat 1 44 0 1654 232 30 0 chr9 60237472 60237937 -57624690 + Charlie4a DNA MER1_type 14 492 -16 28 99 0 0 chr9 60238023 60238114 -57624513 + AT_rich Low_complexity Low_complexity 1 91 0 369 287 27 53 chr9 60238379 60238397 -57624230 - MIR SINE MIR -89 173 156 1515 224 50 11 chr9 60238397 60238755 -57623872 - MLT1A2 LTR MaLR -2 372 1 369 287 27 53 chr9 60238755 60238886 -57623741 - MIR SINE MIR -106 156 28 430 259 20 20 chr9 60238980 60239127 -57623500 + MER103 DNA DNA 9 155 -11 1023 187 5 0 chr9 60239406 60239604 -57623023 - MLT1D LTR MaLR -2 503 305 431 248 50 8 chr9 60239778 60239899 -57622728 + MER63 DNA MER1_type 660 785 -276 3624 114 33 2 chr9 60240520 60241098 -57621529 + L1MB3 LINE L1 5588 6183 0 262 254 0 0 chr9 60241135 60241198 -57621429 - LTR65 LTR ERV1 -6 663 601 279 222 33 22 chr9 60241522 60241612 -57621015 - LTR65 LTR ERV1 -506 163 73 2268 97 10 3 chr9 60241626 60241926 -57620701 - AluSx SINE Alu -10 302 1 373 215 146 14 chr9 60241928 60242072 -57620555 - L1ME2 LINE L1 -59 6105 5943 21 0 0 0 chr9 60242230 60242251 -57620376 + AT_rich Low_complexity Low_complexity 1 21 0 694 291 18 32 chr9 60242837 60243057 -57619570 - MIR SINE MIR -25 237 21 613 282 109 0 chr9 60243216 60243418 -57619209 - MER58A DNA MER1_type 0 224 1 229 284 14 21 chr9 60243532 60243673 -57618954 + (TA)n Simple_repeat Simple_repeat 2 141 0 636 240 166 72 chr9 60244260 60244622 -57618005 - MLT1I LTR MaLR 0 409 14 1057 105 31 12 chr9 60245065 60245227 -57617400 - THE1B LTR MaLR -199 165 1 2125 125 3 37 chr9 60245565 60245886 -57616741 + AluSx SINE Alu 1 310 -2 308 272 53 35 chr9 60246783 60246897 -57615730 - MIR SINE MIR -57 205 90 315 372 76 0 chr9 60248147 60248319 -57614308 + MIR SINE MIR 72 256 -6 4207 118 76 38 chr9 60249643 60249718 -57612909 - MER11A LTR ERVK -4 1262 1191 7247 99 9 22 chr9 60249718 60250803 -57611824 - MER11C LTR ERVK 0 1071 1 4207 118 76 38 chr9 60250803 60251804 -57610823 - MER11A LTR ERVK -75 1191 1 343 204 83 0 chr9 60251925 60252033 -57610594 - L1ME4a LINE L1 -45 6076 5960 2355 77 0 7 chr9 60252185 60252483 -57610144 - AluSp SINE Alu -17 296 1 242 255 0 0 chr9 60252590 60252641 -57609986 - L1ME4a LINE L1 -466 5655 5605 25 31 0 0 chr9 60252727 60252759 -57609868 + AT_rich Low_complexity Low_complexity 1 32 0 1827 149 26 9 chr9 60253224 60253572 -57609055 - L1MA9 LINE L1 0 6312 5959 793 300 76 45 chr9 60253627 60254181 -57608446 - L1MEd LINE L1 -5093 1026 456 1111 287 117 41 chr9 60304989 60305813 -57556814 + L2 LINE L2 2392 3270 -43 195 261 0 0 chr9 60306234 60306280 -57556347 + MIR SINE MIR 97 142 -120 216 97 0 0 chr9 60307400 60307431 -57555196 + (TG)n Simple_repeat Simple_repeat 2 32 0 1872 197 64 26 chr9 60307481 60307645 -57554982 + L1MB4 LINE L1 5660 5816 -364 2275 114 3 0 chr9 60307645 60307952 -57554675 + AluSg SINE Alu 1 308 -2 1872 197 64 26 chr9 60307952 60308298 -57554329 + L1MB4 LINE L1 5816 6179 -1 1173 193 17 0 chr9 60309004 60309243 -57553384 - L1ME4a LINE L1 -630 5544 5302 696 118 31 0 chr9 60309247 60309374 -57553253 - L1MA4 LINE L1 0 7719 7589 1483 105 11 0 chr9 60309376 60309693 -57552934 + L1M1 LINE L1 5168 5487 -743 7623 158 33 26 chr9 60309697 60310235 -57552392 - L1MA4 LINE L1 -116 7603 7070 411 21 0 0 chr9 60310235 60310283 -57552344 + (CA)n Simple_repeat Simple_repeat 1 48 0 7623 158 33 26 chr9 60310283 60310440 -57552187 - L1MA4 LINE L1 -649 7070 6916 260 35 18 53 chr9 60310440 60310497 -57552130 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 7623 158 33 26 chr9 60310497 60312250 -57550377 - L1MA4 LINE L1 -803 6916 5135 2683 162 28 10 chr9 60312393 60312974 -57549653 - L1MA4 LINE L1 -4990 2575 1985 487 221 33 0 chr9 60312972 60313094 -57549533 - L1MA4 LINE L1 -7432 133 8 * 4843 220 51 19 chr9 60313099 60314619 -57548008 - L1M4 LINE L1 -851 5295 3728 1136 209 31 48 chr9 60314626 60314674 -57547953 - L1MEc LINE L1 -3332 2883 2836 2360 86 3 0 chr9 60314674 60314966 -57547661 - AluY SINE Alu -18 293 1 1136 209 31 48 chr9 60314966 60315272 -57547355 - L1MEc LINE L1 -3379 2836 2535 226 278 13 111 chr9 60315416 60315949 -57546678 - L1MEc LINE L1 -4185 2211 1731 1409 212 63 115 chr9 60315976 60316178 -57546449 - L1M4c LINE L1 -4452 2686 2475 434 150 0 12 chr9 60316178 60316258 -57546369 - MADE1 DNA Mariner -1 79 1 1409 212 63 115 chr9 60316258 60316961 -57545666 - L1M4c LINE L1 -4663 2475 1695 302 244 7 111 chr9 60316973 60317108 -57545519 - L1M4c LINE L1 -6736 123 3 442 341 169 26 chr9 60317347 60317921 -57544706 + L2 LINE L2 2085 2740 -574 229 198 164 53 chr9 60317955 60318162 -57544465 + MER113 DNA MER1_type? 7 236 -285 314 295 67 9 chr9 60318493 60318598 -57544029 + L2 LINE L2 3200 3310 -3 21 0 0 0 chr9 60318642 60318663 -57543964 + AT_rich Low_complexity Low_complexity 1 21 0 282 200 77 0 chr9 60318666 60318731 -57543896 + L1MC4a LINE L1 5857 5926 -1882 198 103 0 0 chr9 60318732 60318761 -57543866 + (CA)n Simple_repeat Simple_repeat 2 30 0 303 256 179 39 chr9 60319637 60319793 -57542834 - MLT1K LTR MaLR -379 209 32 323 254 26 18 chr9 60319955 60320069 -57542558 - MER94 DNA DNA -11 123 9 406 274 124 45 chr9 60320077 60320343 -57542284 + L3 LINE CR1 1107 1393 -184 640 198 61 77 chr9 60321772 60322147 -57540480 + L1ME1 LINE L1 5761 6161 -5 216 0 0 0 chr9 60322215 60322239 -57540388 + (TA)n Simple_repeat Simple_repeat 1 24 0 827 167 64 0 chr9 60322851 60323007 -57539620 - MER5A DNA MER1_type -18 171 6 216 293 30 40 chr9 60323455 60323554 -57539073 + L2 LINE L2 2913 3010 -262 694 224 38 11 chr9 60323853 60324036 -57538591 + MER5A DNA MER1_type 2 189 0 26 50 0 0 chr9 60324106 60324146 -57538481 + AT_rich Low_complexity Low_complexity 1 40 0 594 117 72 18 chr9 60324301 60324412 -57538215 - FLAM_C SINE Alu 0 143 27 343 277 21 0 chr9 60325055 60325149 -57537478 - MER58A DNA MER1_type -11 96 1 268 244 84 30 chr9 60325532 60325663 -57536964 + MLT1J LTR MaLR 5 142 -369 1275 244 64 32 chr9 60325768 60326203 -57536424 + MER74B LTR ERVL 70 518 -104 564 288 16 75 chr9 60326336 60326642 -57535985 + MLT1J LTR MaLR 224 511 0 526 278 40 45 chr9 60326835 60327033 -57535594 + MIR SINE MIR 64 260 -2 2788 86 8 3 chr9 60328011 60328384 -57534243 + THE1C LTR MaLR 1 375 0 507 132 57 0 chr9 60330756 60330862 -57531765 + L1MD3 LINE L1 7883 7994 -1 * 5099 126 0 10 chr9 60330858 60331675 -57530952 + L1PA13 LINE L1 5355 6163 0 281 250 0 0 chr9 60332501 60332553 -57530074 + L2 LINE L2 3209 3260 -12 3853 223 43 16 chr9 60332919 60333969 -57528658 - L1MC3 LINE L1 -1 7784 6707 609 164 13 99 chr9 60334450 60334602 -57528025 - L2 LINE L2 -6 3307 3169 549 239 199 108 chr9 60334728 60335155 -57527472 - L2 LINE L2 -544 2770 2305 304 183 61 24 chr9 60335201 60335283 -57527344 - LTR65 LTR ERV1 -284 385 301 543 192 17 33 chr9 60336342 60336462 -57526165 - L2 LINE L2 -21 3292 3175 22 0 0 0 chr9 60336469 60336491 -57526136 + AT_rich Low_complexity Low_complexity 1 22 0 270 0 0 0 chr9 60338172 60338202 -57524425 + (A)n Simple_repeat Simple_repeat 1 30 0 2102 106 0 48 chr9 60339046 60339357 -57523270 + AluSx SINE Alu 1 296 -16 578 207 22 30 chr9 60339585 60339720 -57522907 + L2 LINE L2 3176 3309 -4 249 263 30 30 chr9 60340069 60340168 -57522459 - 7SK RNA RNA -87 106 8 1824 136 50 4 chr9 60341431 60341587 -57521040 - AluSx SINE Alu -20 292 116 237 33 0 0 chr9 60341587 60341617 -57521010 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1824 136 50 4 chr9 60341617 60341739 -57520888 - AluSx SINE Alu -196 116 1 936 110 26 0 chr9 60341739 60341894 -57520733 + L1MA8 LINE L1 6125 6283 -8 29 47 0 0 chr9 60342102 60342145 -57520482 + AT_rich Low_complexity Low_complexity 1 43 0 2158 139 0 0 chr9 60342222 60342523 -57520104 - AluSx SINE Alu -11 301 1 650 289 125 52 chr9 60342650 60343365 -57519262 - L2 LINE L2 -257 3015 2240 540 266 33 51 chr9 60343813 60344027 -57518600 - MIR SINE MIR -27 235 26 204 362 71 14 chr9 60344351 60344561 -57518066 + L2 LINE L2 2874 3095 -177 21 57 0 0 chr9 60345019 60345054 -57517573 + AT_rich Low_complexity Low_complexity 1 35 0 1376 214 160 13 chr9 60345427 60345903 -57516724 - MER97b DNA MER1_type? -229 824 279 656 315 28 31 chr9 60346341 60346595 -57516032 - MIR SINE MIR -8 254 2 26 82 0 0 chr9 60346722 60346783 -57515844 + AT_rich Low_complexity Low_complexity 1 61 0 503 240 162 7 chr9 60346829 60347100 -57515527 - Charlie2 DNA MER1_type -570 2292 1980 3942 196 52 18 chr9 60347102 60347679 -57514948 - L1MB7 LINE L1 -9 6175 5619 2517 44 0 0 chr9 60347679 60347973 -57514654 - AluY SINE Alu -17 294 1 3942 196 52 18 chr9 60347973 60349068 -57513559 - L1MB7 LINE L1 -565 5619 4443 3249 148 83 5 chr9 60349068 60349670 -57512957 + MER50 LTR ERV1 1 649 -85 2048 243 57 25 chr9 60349670 60350519 -57512108 - L1MB7 LINE L1 -2108 4038 3163 743 221 119 13 chr9 60350521 60350756 -57511871 + MSTD LTR MaLR 44 303 -93 645 96 21 1 chr9 60350798 60350905 -57511722 + MSTD LTR MaLR 260 396 0 600 283 138 35 chr9 60350912 60351202 -57511425 - MLT1J1 LTR MaLR -126 320 1 2113 114 7 3 chr9 60351663 60351969 -57510658 + AluSx SINE Alu 3 309 -3 522 218 9 0 chr9 60352220 60352330 -57510297 - MER94 DNA DNA -23 111 1 1549 100 0 32 chr9 60353998 60354218 -57508409 + AluSp SINE Alu 83 295 -18 226 193 0 35 chr9 60355017 60355074 -57507553 + (TATATG)n Simple_repeat Simple_repeat 2 56 0 213 254 14 14 chr9 60355248 60355319 -57507308 + (CATATA)n Simple_repeat Simple_repeat 4 74 0 32 0 0 0 chr9 60355719 60355751 -57506876 + AT_rich Low_complexity Low_complexity 1 32 0 2844 136 93 2 chr9 60356120 60356592 -57506035 - Tigger1 DNA MER2_type -192 2226 1712 13314 31 0 0 chr9 60356642 60358931 -57503696 - L1PA2 LINE L1 0 6155 3901 2223 121 0 10 chr9 60360179 60360486 -57502141 - AluSg SINE Alu -6 304 1 213 125 0 50 chr9 60362031 60362071 -57500556 - L2 LINE L2 -308 2964 2927 327 319 11 0 chr9 60362933 60363024 -57499603 - MIR3 SINE MIR -30 178 87 532 218 27 9 chr9 60363357 60363467 -57499160 + MER81 DNA DNA 1 112 -2 1333 214 59 3 chr9 60363491 60363781 -57498846 - L1MC4 LINE L1 -158 7884 7579 246 192 0 0 chr9 60364615 60364667 -57497960 + (TATG)n Simple_repeat Simple_repeat 3 54 0 514 243 19 0 chr9 60364760 60364867 -57497760 - MIR SINE MIR -134 128 20 2278 121 0 0 chr9 60365703 60366009 -57496618 + AluSx SINE Alu 6 311 -1 1097 168 6 0 chr9 60366519 60366680 -57495947 + FAM SINE Alu 1 162 -13 31 0 0 24 chr9 60366680 60366693 -57495934 + AT_rich Low_complexity Low_complexity 1 13 -28 1845 145 38 3 chr9 60366693 60366983 -57495644 + AluSx SINE Alu 1 300 -12 31 0 0 24 chr9 60366983 60367011 -57495616 + AT_rich Low_complexity Low_complexity 13 41 0 270 307 0 57 chr9 60367021 60367109 -57495518 + MIR SINE MIR 28 110 -152 2744 77 6 16 chr9 60367114 60367390 -57495237 + THE1B LTR MaLR 3 276 -88 4521 144 99 18 chr9 60367390 60368154 -57494473 + LTR1B LTR ERV1 1 826 0 2744 77 6 16 chr9 60368154 60368243 -57494384 + THE1B LTR MaLR 276 364 0 9753 95 28 121 chr9 60368243 60369985 -57492642 + THE1B-int LTR MaLR 1 1580 0 2707 94 19 8 chr9 60369985 60370345 -57492282 + THE1B LTR MaLR 1 364 0 354 277 20 10 chr9 60370812 60370913 -57491714 + MIR SINE MIR 87 188 -74 24 0 0 0 chr9 60371700 60371724 -57490903 + AT_rich Low_complexity Low_complexity 1 24 0 3850 166 46 15 chr9 60373044 60373766 -57488861 - MER49 LTR ERV1 0 923 180 453 211 99 33 chr9 60373943 60374095 -57488532 + MER103 DNA DNA 5 166 0 328 365 25 19 chr9 60374342 60374501 -57488126 - MIR SINE MIR -54 208 49 996 155 0 19 chr9 60374763 60374924 -57487703 - Tigger1 DNA MER2_type 0 2418 2261 28711 44 36 2 chr9 60375024 60378586 -57484041 - L1P LINE L1 -2449 3697 13 10778 125 33 23 chr9 60378588 60378745 -57483882 - Tigger1 DNA MER2_type -692 1726 1572 2575 144 11 29 chr9 60378745 60379195 -57483432 - L1PB4 LINE L1 -2 6154 5713 10778 125 33 23 chr9 60379195 60380746 -57481881 - Tigger1 DNA MER2_type -846 1572 1 321 230 48 63 chr9 60381588 60381714 -57480913 + L1ME4a LINE L1 5989 6112 -9 333 0 0 0 chr9 60381810 60381847 -57480780 + (TG)n Simple_repeat Simple_repeat 2 38 0 958 179 23 22 chr9 60382791 60382999 -57479628 - L1PB4 LINE L1 -98 6063 5854 283 191 116 144 chr9 60383007 60383222 -57479405 + L2 LINE L2 3038 3246 -67 303 28 0 0 chr9 60383260 60383296 -57479331 + (GA)n Simple_repeat Simple_repeat 1 36 0 45 0 0 0 chr9 60384190 60384235 -57478392 + AT_rich Low_complexity Low_complexity 1 45 0 487 281 52 0 chr9 60384430 60384565 -57478062 - MER97b DNA MER1_type? -2 1051 910 22 0 0 0 chr9 60384701 60384723 -57477904 + AT_rich Low_complexity Low_complexity 1 22 0 252 0 0 0 chr9 60384946 60384974 -57477653 + (TC)n Simple_repeat Simple_repeat 1 28 0 216 111 0 0 chr9 60384973 60385009 -57477618 + (CA)n Simple_repeat Simple_repeat 1 36 0 * 21 0 0 0 chr9 60385730 60385751 -57476876 + AT_rich Low_complexity Low_complexity 1 21 0 438 275 92 45 chr9 60387283 60387618 -57475009 - L1ME4a LINE L1 -185 5936 5586 1592 185 19 21 chr9 60387961 60388286 -57474341 + L1M4 LINE L1 5354 5677 -497 10138 182 22 29 chr9 60388296 60392576 -57470051 + L1PA5 LINE L1 9 7590 -2 237 270 0 0 chr9 60392636 60392710 -57469917 - L1MC4 LINE L1 -4 8038 7965 14243 145 29 16 chr9 60392721 60395835 -57466792 + L1PA11 LINE L1 3025 6171 -3 203 254 18 0 chr9 60396437 60396492 -57466135 + MER91B DNA MER1_type 6 61 -129 1719 278 111 19 chr9 60397390 60398074 -57464553 + MER20B DNA MER1_type 35 781 -2 281 331 177 17 chr9 60398294 60398469 -57464158 + MIR3 SINE MIR 1 203 -5 356 270 130 10 chr9 60398609 60398709 -57463918 - MIR SINE MIR -130 132 21 313 208 20 79 chr9 60398845 60398946 -57463681 - MER94 DNA DNA 0 134 40 351 0 0 0 chr9 60399461 60399500 -57463127 + (CA)n Simple_repeat Simple_repeat 2 40 0 275 250 23 23 chr9 60399741 60399829 -57462798 + L2 LINE L2 1856 1943 -1371 260 179 54 0 chr9 60400080 60400136 -57462491 - MER103 DNA DNA -1 165 107 723 196 114 55 chr9 60400144 60400363 -57462264 + MIR SINE MIR 16 247 -15 191 162 54 0 chr9 60400330 60400367 -57462260 + L2 LINE L2 3259 3297 -16 * 407 318 176 30 chr9 60400554 60401208 -57461419 + L2 LINE L2 2323 3085 -187 380 227 20 107 chr9 60401250 60401400 -57461227 + MLT1L LTR MaLR 142 278 -337 362 235 76 34 chr9 60401565 60401684 -57460943 + MLT1L LTR MaLR 492 615 0 369 300 92 43 chr9 60401839 60402395 -57460232 + L1MC4a LINE L1 4024 4606 -1540 3039 159 41 21 chr9 60402451 60403010 -57459617 + L1MC1 LINE L1 5764 6333 0 312 197 56 0 chr9 60403253 60403324 -57459303 - MER116 DNA Mariner 0 80 6 1537 53 21 0 chr9 60403564 60403751 -57458876 + AluY SINE Alu 115 305 -6 635 330 90 22 chr9 60403843 60404479 -57458148 + L1MC4a LINE L1 5255 5933 -1875 660 170 93 135 chr9 60405895 60406206 -57456421 - MER33 DNA MER1_type 0 324 27 444 286 0 0 chr9 60406277 60406389 -57456238 - MIR SINE MIR -105 157 46 967 248 91 26 chr9 60406627 60407010 -57455617 + L1ME4a LINE L1 5543 5950 -171 1913 104 0 8 chr9 60407792 60408051 -57454576 + AluSx SINE Alu 37 293 -19 278 289 83 0 chr9 60408769 60408890 -57453737 + MIR SINE MIR 97 227 -35 465 223 153 74 chr9 60408930 60409159 -57453468 + MIR SINE MIR 16 262 0 29 47 0 0 chr9 60409729 60409772 -57452855 + AT_rich Low_complexity Low_complexity 1 43 0 9914 42 19 136 chr9 60410390 60411959 -57450668 + SVA Other Other 1 1386 0 1728 174 3 20 chr9 60412148 60412453 -57450174 - AluJo SINE Alu -12 300 1 321 301 101 80 chr9 60413109 60413485 -57449142 - L2 LINE L2 -645 2669 2286 489 104 0 15 chr9 60414272 60414339 -57448288 + U4 snRNA snRNA 1 66 -79 2101 103 44 0 chr9 60415057 60415329 -57447298 - AluSq SINE Alu -29 284 1 241 302 72 0 chr9 60415429 60415568 -57447059 + L1ME LINE L1 5764 5912 -209 1697 191 14 7 chr9 60415704 60415992 -57446635 - AluJb SINE Alu -22 290 1 793 298 70 51 chr9 60416154 60416628 -57445999 - L2 LINE L2 -1 3312 2830 236 282 35 49 chr9 60416674 60416816 -57445811 - L2 LINE L2 -613 2701 2562 3748 95 18 20 chr9 60417757 60418314 -57444313 + L1PA10 LINE L1 5613 6168 0 407 181 75 15 chr9 60418994 60419127 -57443500 - Charlie7 DNA MER1_type -41 2571 2431 326 174 29 14 chr9 60419116 60419185 -57443442 - Charlie7 DNA MER1_type -2511 101 32 * 256 241 65 102 chr9 60420438 60420546 -57442081 + MIR3 SINE MIR 57 160 -48 304 129 15 258 chr9 60420546 60420678 -57441949 - MER58 DNA MER1_type 0 2420 2321 355 299 65 13 chr9 60420905 60421059 -57441568 - MIR3 SINE MIR -7 201 40 2533 57 0 3 chr9 60421579 60421907 -57440720 + AluY SINE Alu 1 327 0 207 0 0 0 chr9 60422392 60422415 -57440212 + (T)n Simple_repeat Simple_repeat 1 23 0 2267 104 0 0 chr9 60422660 60422958 -57439669 + AluSc SINE Alu 3 300 -9 263 283 11 11 chr9 60423650 60423742 -57438885 + (CA)n Simple_repeat Simple_repeat 1 92 0 22 0 0 0 chr9 60424770 60424792 -57437835 + AT_rich Low_complexity Low_complexity 1 22 0 2364 94 3 3 chr9 60424800 60425097 -57437530 - AluSq SINE Alu -16 297 1 201 341 12 12 chr9 60425339 60425424 -57437203 + MIR3 SINE MIR 70 154 -54 1046 200 48 5 chr9 60425652 60425862 -57436765 + MER20 DNA MER1_type 1 219 0 273 286 64 39 chr9 60425863 60426097 -57436530 + L2 LINE L2 2646 2885 -429 850 206 32 5 chr9 60428612 60428801 -57433826 + MER3 DNA MER1_type 9 202 -7 249 108 0 0 chr9 60430032 60430069 -57432558 + (TC)n Simple_repeat Simple_repeat 2 38 0 2183 107 3 13 chr9 60430626 60430924 -57431703 - AluSg SINE Alu -15 295 1 242 241 75 60 chr9 60430926 60431059 -57431568 + MER112 DNA MER1_type 38 172 -88 2345 90 10 0 chr9 60431109 60431409 -57431218 - AluSx SINE Alu -9 303 1 213 121 0 0 chr9 60431633 60431666 -57430961 + (GGGA)n Simple_repeat Simple_repeat 4 36 0 2111 165 38 3 chr9 60432502 60432847 -57429780 + MLT1A1 LTR MaLR 5 361 -4 282 272 86 56 chr9 60433072 60433234 -57429393 - MIR SINE MIR -92 170 4 359 280 60 20 chr9 60433969 60434146 -57428481 - MIR SINE MIR -52 210 34 454 266 9 9 chr9 60434855 60434968 -57427659 - L2 LINE L2 0 3272 3160 503 270 147 6 chr9 60435321 60435484 -57427143 + MER5A DNA MER1_type 4 189 0 430 347 36 6 chr9 60435833 60436000 -57426627 + MIR3 SINE MIR 22 193 -15 654 265 83 5 chr9 60437744 60437948 -57424679 + MER112 DNA MER1_type 35 254 -6 1555 154 33 0 chr9 60438883 60439156 -57423471 + L1PB3 LINE L1 5866 6147 -7 25 31 0 0 chr9 60439156 60439188 -57423439 + AT_rich Low_complexity Low_complexity 1 32 0 341 271 28 19 chr9 60440640 60440747 -57421880 - MER5A DNA MER1_type -7 182 75 192 309 81 40 chr9 60440656 60440805 -57421822 + MER5A DNA MER1_type 35 189 0 * 215 309 33 53 chr9 60440883 60441035 -57421592 + MIR SINE MIR 77 225 -37 180 152 0 0 chr9 60441052 60441085 -57421542 + CT-rich Low_complexity Low_complexity 4 36 0 447 258 72 36 chr9 60441647 60441868 -57420759 - MIR SINE MIR -1 261 33 676 166 185 0 chr9 60441896 60442053 -57420574 - MER5A DNA MER1_type -3 186 1 377 218 73 117 chr9 60442066 60442150 -57420477 + MER5B DNA MER1_type 8 81 -97 2476 148 27 68 chr9 60442150 60442710 -57419917 - L1MB7 LINE L1 0 6184 5648 377 218 73 117 chr9 60442710 60442804 -57419823 + MER5B DNA MER1_type 81 178 0 436 260 169 0 chr9 60442820 60442974 -57419653 + MER5A DNA MER1_type 9 188 -1 342 284 52 45 chr9 60443855 60444010 -57418617 - MIR SINE MIR -98 164 9 276 207 12 49 chr9 60444040 60444122 -57418505 - MIR3 SINE MIR -52 156 78 846 207 17 6 chr9 60445277 60445456 -57417171 + L1MB5 LINE L1 5986 6166 -8 3028 178 45 7 chr9 60445708 60446308 -57416319 + L1MB7 LINE L1 5561 6183 -1 398 231 22 0 chr9 60446593 60446684 -57415943 + MER81 DNA DNA 20 112 -2 190 268 37 37 chr9 60447123 60447205 -57415422 + MIR3 SINE MIR 117 198 -10 1253 273 67 36 chr9 60447320 60447738 -57414889 + LTR16C LTR ERVL 45 475 -16 405 0 0 0 chr9 60447803 60447848 -57414779 + (CA)n Simple_repeat Simple_repeat 2 46 0 21 89 0 0 chr9 60447948 60448004 -57414623 + AT_rich Low_complexity Low_complexity 1 56 0 315 244 109 32 chr9 60448329 60448485 -57414142 - MER117 DNA MER1_type -29 168 1 472 300 100 58 chr9 60449582 60450012 -57412615 + MLT1L LTR MaLR 168 615 0 201 74 0 0 chr9 60450522 60450549 -57412078 + (A)n Simple_repeat Simple_repeat 1 27 0 187 226 10 159 chr9 60451225 60451420 -57411207 - MER5B DNA MER1_type -3 175 10 265 245 11 53 chr9 60451626 60451720 -57410907 + MER5A DNA MER1_type 37 126 -63 * 325 226 0 43 chr9 60451636 60451729 -57410898 - MER5A DNA MER1_type -33 156 68 214 250 0 0 chr9 60453360 60453408 -57409219 + CT-rich Low_complexity Low_complexity 5 52 0 356 284 75 41 chr9 60453408 60453700 -57408927 - L1MEd LINE L1 -4971 1148 847 2082 124 162 5 chr9 60453927 60454297 -57408330 + MSTA LTR MaLR 1 428 0 2208 133 7 0 chr9 60454692 60455000 -57407627 - AluSx SINE Alu -2 310 1 325 310 76 25 chr9 60455097 60455255 -57407372 - HAL1 LINE L1 -1059 1448 1283 733 190 25 0 chr9 60455466 60455587 -57407040 + FLAM_C SINE Alu 1 124 -9 450 176 0 47 chr9 60455612 60455697 -57406930 + AluJ/FRAM SINE Alu 225 305 -7 312 27 0 0 chr9 60455734 60455771 -57406856 + (CA)n Simple_repeat Simple_repeat 1 37 0 400 268 19 63 chr9 60456355 60456644 -57405983 + L1ME3A LINE L1 5162 5428 -742 4951 144 28 68 chr9 60456663 60457958 -57404669 - L1PB4 LINE L1 -4 6854 5625 1926 147 9 25 chr9 60457958 60457969 -57404658 + THE1B LTR MaLR 50 60 -304 1766 119 0 0 chr9 60457969 60458205 -57404422 - AluSx SINE Alu -16 296 61 1926 147 9 25 chr9 60458205 60458513 -57404114 + THE1B LTR MaLR 60 364 0 8856 187 31 21 chr9 60458514 60459353 -57403274 - L1PB4 LINE L1 -1807 5041 4211 196 30 61 0 chr9 60459353 60459386 -57403241 + (TTG)n Simple_repeat Simple_repeat 1 35 0 8856 187 31 21 chr9 60459386 60460443 -57402184 - L1PB4 LINE L1 -2637 4211 3127 1112 314 81 7 chr9 60461084 60461492 -57401135 - L1PB4 LINE L1 -6399 450 13 1646 226 85 7 chr9 60461499 60461945 -57400682 + L1ME3A LINE L1 5410 5890 -280 1216 185 52 13 chr9 60461945 60462284 -57400343 + MSTC LTR MaLR 1 428 0 340 271 0 0 chr9 60462284 60462369 -57400258 + L1ME3A LINE L1 5886 5970 -200 900 273 86 27 chr9 60462381 60462788 -57399839 + L1ME3 LINE L1 5521 5951 -211 190 313 16 16 chr9 60463286 60463350 -57399277 - MIR SINE MIR -113 149 86 1829 136 56 0 chr9 60463566 60463853 -57398774 + L1PB4 LINE L1 5841 6143 -13 26 0 0 0 chr9 60463853 60463879 -57398748 + AT_rich Low_complexity Low_complexity 1 26 0 2017 129 7 0 chr9 60463881 60464160 -57398467 - AluJb SINE Alu -23 289 9 1535 207 37 16 chr9 60464297 60464620 -57398007 + MER58B DNA MER1_type 12 341 0 269 296 11 0 chr9 60464697 60464785 -57397842 + MIR SINE MIR 147 235 -27 568 253 65 39 chr9 60466191 60466420 -57396207 - L1MCc LINE L1 -6178 245 11 281 362 53 0 chr9 60466634 60466728 -57395899 + MIR SINE MIR 43 141 -67 266 169 15 0 chr9 60467319 60467384 -57395243 + (TGGA)n Simple_repeat Simple_repeat 4 69 0 1716 100 4 0 chr9 60468625 60468854 -57393773 + AluSp SINE Alu 1 230 -83 881 232 47 0 chr9 60469145 60469335 -57393292 + MER58A DNA MER1_type 1 199 -25 5728 117 37 16 chr9 60469461 60470317 -57392310 + L1MC1 LINE L1 5460 6333 0 594 305 141 19 chr9 60470345 60470706 -57391921 + MLT1I LTR MaLR 1 405 -4 303 28 0 0 chr9 60470905 60470941 -57391686 + (TC)n Simple_repeat Simple_repeat 1 36 0 604 292 68 42 chr9 60472309 60472545 -57390082 + MIR SINE MIR 20 261 -1 1318 191 13 4 chr9 60473315 60473551 -57389076 + MIR SINE MIR 19 256 -6 269 276 171 32 chr9 60474315 60474438 -57388189 + MIR3 SINE MIR 18 157 -51 310 320 59 20 chr9 60474440 60474593 -57388034 - MER20 DNA MER1_type -4 215 57 1648 124 29 7 chr9 60474597 60474870 -57387757 + L1MA8 LINE L1 6008 6286 -5 3729 192 32 14 chr9 60475191 60475900 -57386727 + MER72 LTR ERV1 1 722 0 621 301 65 39 chr9 60476394 60477209 -57385418 + L1MD1 LINE L1 5084 5938 -226 214 173 53 80 chr9 60478134 60478209 -57384418 + L2 LINE L2 3009 3081 -191 773 209 8 0 chr9 60478602 60478731 -57383896 + FLAM_A SINE Alu 1 130 -3 487 292 149 22 chr9 60478789 60479111 -57383516 - L2 LINE L2 -4 3309 2947 797 173 8 15 chr9 60479305 60479438 -57383189 - FLAM_C SINE Alu -11 132 1 285 29 0 0 chr9 60480586 60480620 -57382007 + (TC)n Simple_repeat Simple_repeat 1 34 0 280 279 43 75 chr9 60480971 60481132 -57381495 - MIR SINE MIR -98 164 9 547 69 0 23 chr9 60481200 60481287 -57381340 + (TAGA)n Simple_repeat Simple_repeat 4 88 0 244 253 12 78 chr9 60482385 60482577 -57380050 - Charlie8 DNA MER1_type -1000 1417 156 2713 168 74 12 chr9 60482894 60483341 -57379286 + MLT2B1 LTR ERVL 1 482 -38 402 100 0 0 chr9 60483341 60483401 -57379226 + (TG)n Simple_repeat Simple_repeat 2 61 0 2713 168 74 12 chr9 60483401 60483441 -57379186 + MLT2B1 LTR ERVL 482 518 -2 242 291 39 10 chr9 60483462 60483565 -57379062 - MIR SINE MIR -73 189 84 187 349 30 45 chr9 60483668 60483800 -57378827 - L2 LINE L2 -5 3308 3179 406 226 235 0 chr9 60483901 60484016 -57378611 - MER5A DNA MER1_type -1 188 47 2296 108 0 0 chr9 60484018 60484323 -57378304 + AluY SINE Alu 1 305 -6 186 191 43 0 chr9 60484337 60484384 -57378243 - MER5A DNA MER1_type -132 57 9 2127 211 31 25 chr9 60484426 60484517 -57378110 + L1MB7 LINE L1 5648 5737 -447 2108 124 3 3 chr9 60484517 60484823 -57377804 + AluSx SINE Alu 1 306 -6 2127 211 31 25 chr9 60484823 60485209 -57377418 + L1MB7 LINE L1 5737 6128 -56 1060 171 11 6 chr9 60485256 60485437 -57377190 - MER5A DNA MER1_type -2 187 6 250 45 45 0 chr9 60486763 60486807 -57375820 + (TC)n Simple_repeat Simple_repeat 2 47 0 22 35 0 0 chr9 60486860 60486889 -57375738 + AT_rich Low_complexity Low_complexity 1 29 0 1540 146 14 41 chr9 60486896 60487190 -57375437 + L1MB7 LINE L1 5883 6168 -16 2258 90 29 26 chr9 60488885 60489234 -57373393 + AluSp SINE Alu 1 350 0 239 183 141 0 chr9 60489429 60489500 -57373127 - HsTC2 DNA Tc2 -1814 84 4 276 30 0 0 chr9 60489864 60489897 -57372730 + (CA)n Simple_repeat Simple_repeat 1 33 0 528 46 46 0 chr9 60490190 60490277 -57372350 + (TAGA)n Simple_repeat Simple_repeat 2 92 0 711 292 39 30 chr9 60490467 60490799 -57371828 - L1MC4a LINE L1 -1867 5941 5607 241 333 89 36 chr9 60491068 60491293 -57371334 - L3 LINE CR1 -238 1339 1103 25 0 0 0 chr9 60491886 60491911 -57370716 + AT_rich Low_complexity Low_complexity 1 25 0 189 333 16 0 chr9 60491995 60492058 -57370569 + L2 LINE L2 3151 3214 -58 248 224 55 145 chr9 60492365 60492466 -57370161 - L2 LINE L2 0 3313 3204 2228 112 0 7 chr9 60492466 60492771 -57369856 - AluSq SINE Alu -10 303 1 248 224 55 145 chr9 60492771 60492785 -57369842 - L2 LINE L2 -109 3204 3190 2994 126 9 0 chr9 60492785 60493214 -57369413 + L1PA16 LINE L1 5730 6162 -4 248 224 55 145 chr9 60493214 60493352 -57369275 - L2 LINE L2 -123 3190 3082 2608 36 7 3 chr9 60494817 60495121 -57367506 - AluY SINE Alu -6 305 1 2418 90 59 14 chr9 60495290 60495644 -57366983 - L1PB1 LINE L1 0 6151 5782 705 76 64 18 chr9 60495662 60495833 -57366794 + (TA)n Simple_repeat Simple_repeat 1 179 0 4485 152 6 25 chr9 60495833 60497317 -57365310 - L1PB1 LINE L1 -360 5791 4342 334 215 146 46 chr9 60497898 60498028 -57364599 + MIR SINE MIR 29 171 -91 1175 264 61 3 chr9 60498028 60498338 -57364289 - MER58B DNA MER1_type 0 341 14 1774 198 19 51 chr9 60500183 60500612 -57362015 + MLT1C LTR MaLR 53 467 0 306 0 0 0 chr9 60500725 60500759 -57361868 + (TC)n Simple_repeat Simple_repeat 1 34 0 1121 125 3 0 chr9 60501282 60501587 -57361040 + (TTCC)n Simple_repeat Simple_repeat 1 305 0 658 262 153 65 chr9 60501736 60502103 -57360524 - L1ME4a LINE L1 -104 6017 5684 2564 37 7 3 chr9 60502103 60502403 -57360224 - AluY SINE Alu -10 301 1 658 262 153 65 chr9 60502403 60502723 -57359904 - L1ME4a LINE L1 -437 5684 5255 188 143 0 0 chr9 60502789 60502824 -57359803 - L2 LINE L2 -2 3311 3277 2151 109 3 0 chr9 60502826 60503120 -57359507 + AluSc SINE Alu 1 295 -14 358 282 55 60 chr9 60503698 60504063 -57358564 - L1ME4a LINE L1 -1487 4659 4297 2274 114 0 7 chr9 60504838 60505146 -57357481 + AluSq SINE Alu 1 306 -7 1186 139 0 0 chr9 60505434 60505599 -57357028 + AluSg/x SINE Alu 135 299 -13 357 264 39 31 chr9 60505901 60506030 -57356597 + L1ME LINE L1 6 135 -5935 599 296 123 16 chr9 60506239 60506557 -57356070 - L1ME4a LINE L1 -2623 3523 3172 666 265 105 49 chr9 60506558 60506864 -57355763 + L1ME1 LINE L1 5825 6147 -19 1144 52 0 0 chr9 60506869 60507026 -57355601 - AluY SINE Alu 0 311 155 23 0 0 0 chr9 60507030 60507053 -57355574 + AT_rich Low_complexity Low_complexity 1 23 0 2016 121 3 3 chr9 60507413 60507702 -57354925 - AluSg SINE Alu -21 289 1 277 284 64 18 chr9 60507702 60507811 -57354816 + L1MC/D LINE L1 5630 5743 -2065 1953 133 0 7 chr9 60507843 60508175 -57354452 + AluSx SINE Alu 1 330 0 204 347 0 0 chr9 60508930 60509002 -57353625 + MIR SINE MIR 76 147 -115 1920 147 7 0 chr9 60509184 60509469 -57353158 + AluSx SINE Alu 5 291 -21 2118 100 0 7 chr9 60509871 60510152 -57352475 - AluSc SINE Alu -17 292 14 187 140 0 70 chr9 60510387 60510444 -57352183 + (GGGA)n Simple_repeat Simple_repeat 4 56 0 470 313 185 0 chr9 60512519 60512730 -57349897 - MIR SINE MIR 0 262 13 722 258 37 26 chr9 60513097 60513287 -57349340 + MIR SINE MIR 63 254 -8 272 277 227 0 chr9 60513629 60513748 -57348879 + MER117 DNA MER1_type 1 146 -51 2127 54 25 22 chr9 60514153 60514430 -57348197 + L1PA13 LINE L1 5881 6158 -5 2398 93 0 10 chr9 60514430 60514742 -57347885 + AluSq SINE Alu 1 309 -4 491 309 34 24 chr9 60514813 60515020 -57347607 + L1MC4a LINE L1 5687 5895 -1913 1634 186 68 120 chr9 60515070 60515164 -57347463 + MER119 DNA MER1_type 85 182 -401 882 133 31 0 chr9 60515164 60515292 -57347335 - FLAM_C SINE Alu 0 133 2 1634 186 68 120 chr9 60515292 60515723 -57346904 + MER119 DNA MER1_type 182 583 0 2760 145 34 0 chr9 60515975 60516388 -57346239 + MSTA LTR MaLR 2 428 0 458 262 257 5 chr9 60516547 60516734 -57345893 + MIR SINE MIR 27 260 -2 1197 114 0 84 chr9 60516805 60517007 -57345620 - AluSx SINE Alu -3 307 123 541 89 66 15 chr9 60517007 60517457 -57345170 + (TA)n Simple_repeat Simple_repeat 1 473 0 870 137 0 0 chr9 60517457 60517581 -57345046 - AluSx SINE Alu -189 124 1 869 272 37 20 chr9 60518329 60518627 -57344000 + LTR16C LTR ERVL 189 491 0 2085 120 36 3 chr9 60519827 60520128 -57342499 + AluSx SINE Alu 2 312 0 987 202 0 6 chr9 60520344 60520517 -57342110 - MER58A DNA MER1_type -16 208 37 555 73 0 49 chr9 60520818 60520900 -57341727 - L1PA11 LINE L1 -2 6172 6095 544 285 57 6 chr9 60520970 60521128 -57341499 - MIR SINE MIR -66 196 31 267 333 65 48 chr9 60521196 60521532 -57341095 + L2 LINE L2 2049 2390 -924 1407 209 46 40 chr9 60521566 60521916 -57340711 + MLT1H1 LTR MaLR 203 554 -1 194 162 0 27 chr9 60523803 60523840 -57338787 + MIR SINE MIR 116 151 -111 452 283 83 17 chr9 60524595 60524805 -57337822 - MIR SINE MIR -32 230 8 3332 174 102 42 chr9 60525077 60525933 -57336694 - L1MC4a LINE L1 -5 7803 6897 181 245 0 0 chr9 60525937 60525986 -57336641 + MIR SINE MIR 83 131 -77 300 296 61 0 chr9 60526181 60526279 -57336348 + MIR SINE MIR 25 128 -134 225 308 81 81 chr9 60526344 60526516 -57336111 + MER5A DNA MER1_type 18 189 0 615 201 182 0 chr9 60527338 60527492 -57335135 - L1MB5 LINE L1 -6 6168 5987 1973 157 0 7 chr9 60527497 60527802 -57334825 - AluJb SINE Alu -9 303 1 283 234 0 16 chr9 60528390 60528454 -57334173 + MER112 DNA MER1_type 2 64 -196 219 36 0 0 chr9 60528456 60528484 -57334143 + (CA)n Simple_repeat Simple_repeat 2 29 0 641 273 66 20 chr9 60528647 60528845 -57333782 - MIR SINE MIR -46 216 10 330 160 187 0 chr9 60529067 60529142 -57333485 + MIR3 SINE MIR 82 170 -38 384 259 182 28 chr9 60530423 60530566 -57332061 + MER5A DNA MER1_type 25 189 0 3184 117 35 0 chr9 60531935 60532395 -57330232 - MER1A DNA MER1_type 0 529 54 197 95 0 24 chr9 60532471 60532513 -57330114 + (TTTTTG)n Simple_repeat Simple_repeat 4 44 0 352 345 14 28 chr9 60533359 60533504 -57329123 + MIR SINE MIR 21 163 -99 225 346 87 0 chr9 60533534 60533638 -57328989 - L2 LINE L2 -2 3311 3199 2255 76 3 17 chr9 60533874 60534175 -57328452 - L1PA13 LINE L1 0 6163 5867 365 244 130 0 chr9 60534509 60534632 -57327995 - MIR SINE MIR 0 262 124 555 271 51 114 chr9 60534893 60535225 -57327402 + MLT1L LTR MaLR 1 311 -304 242 281 167 62 chr9 60535669 60535879 -57326748 + MER102a DNA MER1_type 98 329 -1 1090 47 0 0 chr9 60537093 60537221 -57325406 + L1PA4 LINE L1 6025 6152 -3 307 282 0 13 chr9 60538182 60538260 -57324367 - MIR SINE MIR -139 123 47 3233 201 29 80 chr9 60538366 60539313 -57323314 + L1M4 LINE L1 3969 4866 -1280 481 259 94 67 chr9 60539610 60539834 -57322793 - MIR SINE MIR -5 257 28 501 211 0 0 chr9 60539896 60539995 -57322632 - MIR3 SINE MIR -6 202 103 1061 289 65 38 chr9 60540054 60540452 -57322175 - MLT1I LTR MaLR 0 409 1 2493 87 3 0 chr9 60541446 60541757 -57320870 - AluSq SINE Alu 0 313 2 283 305 11 0 chr9 60542242 60542337 -57320290 - MIR SINE MIR 0 262 167 279 140 0 0 chr9 60542613 60542663 -57319964 + (CA)n Simple_repeat Simple_repeat 1 50 0 2154 89 33 26 chr9 60544034 60544336 -57318291 + AluSp SINE Alu 1 304 -9 812 263 164 65 chr9 60546168 60546392 -57316235 - MLT1H1 LTR MaLR 0 555 355 678 65 9 19 chr9 60546392 60546499 -57316128 + (TC)n Simple_repeat Simple_repeat 1 106 0 812 263 164 65 chr9 60546499 60546779 -57315848 - MLT1H1 LTR MaLR -200 355 1 484 199 84 23 chr9 60548159 60548290 -57314337 - MIR SINE MIR 0 262 124 24 32 0 0 chr9 60548686 60548717 -57313910 + AT_rich Low_complexity Low_complexity 1 31 0 4541 114 33 6 chr9 60548719 60549385 -57313242 - L1PA16 LINE L1 -9 6157 5474 1510 231 62 42 chr9 60550585 60551066 -57311561 - L1ME3A LINE L1 -158 6012 5522 2321 101 10 0 chr9 60551267 60551575 -57311052 + AluSx SINE Alu 1 311 -1 181 292 115 31 chr9 60552138 60552234 -57310393 - L2 LINE L2 -2029 1285 1182 1318 150 29 12 chr9 60552643 60552883 -57309744 + L1MB7 LINE L1 5941 6184 0 1213 250 25 25 chr9 60552883 60553279 -57309348 + L1M4 LINE L1 4983 5378 -768 619 277 118 57 chr9 60553400 60553891 -57308736 - LTR33 LTR ERVL 0 521 1 2230 91 0 56 chr9 60553994 60554314 -57308313 - AluY SINE Alu -9 302 1 496 270 51 39 chr9 60554975 60555153 -57307474 + L2 LINE L2 3132 3311 -2 573 72 0 0 chr9 60555292 60555375 -57307252 + (TC)n Simple_repeat Simple_repeat 2 84 0 291 220 0 0 chr9 60555719 60555778 -57306849 + MER112 DNA MER1_type 13 71 -189 548 209 8 47 chr9 60555778 60555907 -57306720 - L2 LINE L2 -1 3312 3189 275 264 91 0 chr9 60555939 60556049 -57306578 + MER112 DNA MER1_type 141 260 0 392 294 173 45 chr9 60556091 60556686 -57305941 - L2 LINE L2 -939 2375 1705 5849 130 7 14 chr9 60556744 60557841 -57304786 + L1PB2 LINE L1 5053 6143 -8 438 158 18 35 chr9 60558004 60558175 -57304452 + (TG)n Simple_repeat Simple_repeat 2 169 0 269 118 26 26 chr9 60558189 60558265 -57304362 + (TG)n Simple_repeat Simple_repeat 1 76 0 2082 168 86 22 chr9 60559151 60559485 -57303142 + MSTB1 LTR MaLR 1 367 -65 2819 23 0 0 chr9 60559485 60559794 -57302833 - AluY SINE Alu -2 309 1 2082 168 86 22 chr9 60559794 60559865 -57302762 + MSTB1 LTR MaLR 367 432 0 319 354 51 6 chr9 60559954 60560112 -57302515 - MIR SINE MIR -72 190 26 2251 103 7 0 chr9 60560497 60560797 -57301830 + AluSx SINE Alu 1 302 -10 736 166 101 96 chr9 60562050 60562140 -57300487 - MER3 DNA MER1_type -2 207 119 2211 98 10 7 chr9 60562140 60562446 -57300181 - AluSx SINE Alu -2 310 4 736 166 101 96 chr9 60562446 60562554 -57300073 - MER3 DNA MER1_type -90 119 8 364 218 202 8 chr9 60562575 60562699 -57299928 - MER5A DNA MER1_type -6 183 36 180 295 45 27 chr9 60563343 60563455 -57299172 - MIR SINE MIR -70 192 79 185 265 181 12 chr9 60564087 60564170 -57298457 - L2 LINE L2 -525 2789 2693 2408 85 0 3 chr9 60564178 60564483 -57298144 + AluSq SINE Alu 1 304 -9 401 183 12 24 chr9 60565076 60565158 -57297469 + MER5A DNA MER1_type 11 91 -98 209 322 11 23 chr9 60565652 60565739 -57296888 + MER5A DNA MER1_type 34 119 -70 180 158 0 0 chr9 60566205 60566243 -57296384 + (TA)n Simple_repeat Simple_repeat 2 39 0 846 282 61 39 chr9 60566267 60566649 -57295978 + L1ME LINE L1 5295 5695 -475 2287 108 0 3 chr9 60566649 60566944 -57295683 + AluSx SINE Alu 1 294 -18 846 282 61 39 chr9 60566944 60567019 -57295608 + L1ME LINE L1 5695 5767 -403 193 177 0 48 chr9 60567029 60567091 -57295536 + (CATA)n Simple_repeat Simple_repeat 1 59 0 239 286 185 42 chr9 60567172 60567361 -57295266 - MIR SINE MIR -27 235 20 186 43 0 0 chr9 60567509 60567532 -57295095 + (CA)n Simple_repeat Simple_repeat 2 24 0 215 260 55 71 chr9 60568331 60568458 -57294169 + L2 LINE L2 2139 2263 -1051 398 227 62 78 chr9 60569294 60569536 -57293091 + MER102a DNA MER1_type 92 329 -1 24 53 0 0 chr9 60569984 60570022 -57292605 + AT_rich Low_complexity Low_complexity 1 38 0 2742 100 50 9 chr9 60571314 60571733 -57290894 - L1PB3 LINE L1 -2 6152 5717 3707 111 35 6 chr9 60571995 60572507 -57290120 - MER1A DNA MER1_type 0 527 1 296 281 21 0 chr9 60572895 60572991 -57289636 + MIR SINE MIR 52 149 -113 2237 104 7 13 chr9 60573374 60573683 -57288944 - AluJb SINE Alu -5 307 1 314 263 53 53 chr9 60574320 60574453 -57288174 - MER5A DNA MER1_type -41 148 16 297 0 0 0 chr9 60575013 60575046 -57287581 + (TG)n Simple_repeat Simple_repeat 2 34 0 180 0 0 0 chr9 60575336 60575356 -57287271 + (A)n Simple_repeat Simple_repeat 1 20 0 1212 232 71 67 chr9 60575596 60576045 -57286582 + LTR37B LTR ERV1 16 466 -2 1905 104 77 0 chr9 60576963 60577253 -57285374 - AluSx SINE Alu 0 311 2 267 318 137 14 chr9 60579203 60579410 -57283217 + MIR SINE MIR 3 229 -33 582 283 164 20 chr9 60579417 60579771 -57282856 + MLT1I LTR MaLR 1 405 -4 336 342 33 0 chr9 60580592 60580712 -57281915 + MIR SINE MIR 40 163 -99 195 312 86 0 chr9 60580699 60580792 -57281835 - MIR SINE MIR 0 262 162 * 2317 86 0 0 chr9 60580809 60581089 -57281538 - AluSx SINE Alu -9 303 24 309 192 116 75 chr9 60581536 60581682 -57280945 + L1ME4a LINE L1 5910 6061 -60 5823 63 4 0 chr9 60581700 60582419 -57280208 - L1PA6 LINE L1 -2 6152 5431 1638 115 172 0 chr9 60583648 60583892 -57278735 + AluSx SINE Alu 1 286 -26 453 36 0 0 chr9 60583892 60583947 -57278680 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 493 253 31 7 chr9 60584501 60584668 -57277959 - MIR SINE MIR -51 211 42 2646 42 0 0 chr9 60584920 60585227 -57277400 + AluY SINE Alu 1 307 -4 2242 85 0 4 chr9 60585543 60585877 -57276750 - AluSg SINE Alu 0 333 1 522 281 26 58 chr9 60586012 60586325 -57276302 + L1MEc LINE L1 1460 1762 -4634 2235 82 0 4 chr9 60586637 60586971 -57275656 - AluSg SINE Alu 0 333 1 533 333 24 6 chr9 60587411 60587630 -57274997 + MIR SINE MIR 30 251 -11 194 250 31 0 chr9 60588860 60588924 -57273703 - MIR SINE MIR -85 177 112 237 189 19 0 chr9 60589189 60589242 -57273385 - MIR SINE MIR -126 82 29 1203 8 0 0 chr9 60590109 60590243 -57272384 - L1HS LINE L1 0 6155 6022 434 73 0 15 chr9 60591105 60591173 -57271454 + (CA)n Simple_repeat Simple_repeat 1 67 0 24 91 0 0 chr9 60591573 60591639 -57270988 + AT_rich Low_complexity Low_complexity 1 66 0 543 196 10 0 chr9 60592025 60592127 -57270500 + U13 snRNA snRNA 1 103 -1 2551 58 0 3 chr9 60592226 60592534 -57270093 - AluY SINE Alu -4 307 1 2363 108 0 3 chr9 60592601 60592908 -57269719 - AluSx SINE Alu -6 306 1 290 143 143 0 chr9 60593136 60593199 -57269428 + MER3 DNA MER1_type 13 84 -125 1276 168 107 27 chr9 60593207 60593454 -57269173 + MER3 DNA MER1_type 2271 2552 -72 2506 83 0 6 chr9 60593454 60593767 -57268860 - AluY SINE Alu 0 311 1 1276 168 107 27 chr9 60593767 60593847 -57268780 + MER3 DNA MER1_type 2552 2624 0 218 284 12 37 chr9 60594539 60594620 -57268007 - L2 LINE L2 -4 3309 3231 260 243 0 29 chr9 60594665 60594735 -57267892 + AluJ/monomer SINE Alu 235 302 0 2856 64 0 6 chr9 60595043 60595400 -57267227 + THE1A LTR MaLR 1 355 0 874 271 160 44 chr9 60595753 60596395 -57266232 - L1MC4a LINE L1 -1684 6124 5408 2042 149 0 7 chr9 60596450 60596751 -57265876 + AluJo SINE Alu 1 299 -13 1688 167 35 0 chr9 60597216 60597503 -57265124 + MER2 DNA MER2_type 43 339 -6 1113 132 56 0 chr9 60597505 60597702 -57264925 + L1MA9 LINE L1 6104 6311 -1 198 0 0 0 chr9 60597753 60597775 -57264852 + (A)n Simple_repeat Simple_repeat 1 22 0 236 293 49 12 chr9 60597829 60597911 -57264716 + MIR3 SINE MIR 97 181 -27 493 292 86 72 chr9 60599296 60599492 -57263135 + LTR16C LTR ERVL 138 343 -148 1373 176 59 96 chr9 60599492 60599879 -57262748 - MLT1A2 LTR MaLR -1 373 1 493 292 86 72 chr9 60599879 60600031 -57262596 + LTR16C LTR ERVL 343 491 0 285 200 63 21 chr9 60600399 60600494 -57262133 - L1MC4a LINE L1 -1639 6169 6071 1255 209 171 23 chr9 60600794 60601205 -57261422 + MLT1D LTR MaLR 7 467 0 317 194 194 0 chr9 60601247 60601350 -57261277 - L2 LINE L2 -219 3053 2931 2141 125 6 6 chr9 60601429 60601740 -57260887 - AluSx SINE Alu 0 312 2 192 225 67 67 chr9 60601760 60601849 -57260778 - MIR3 SINE MIR -38 170 82 213 114 0 0 chr9 60603013 60603034 -57259593 + (TAA)n Simple_repeat Simple_repeat 2 25 -11 2728 94 13 11 chr9 60603034 60603408 -57259219 - THE1C LTR MaLR 0 375 1 213 114 0 0 chr9 60603408 60603421 -57259206 + (TAA)n Simple_repeat Simple_repeat 24 36 0 2107 144 0 3 chr9 60604490 60604802 -57257825 + AluSx SINE Alu 1 311 -1 750 139 0 9 chr9 60605064 60605179 -57257448 + FLAM_C SINE Alu 4 117 -16 328 214 206 15 chr9 60609644 60609775 -57252852 + MER5B DNA MER1_type 1 156 -22 404 237 177 54 chr9 60610089 60610275 -57252352 + MIR SINE MIR 48 256 -6 292 324 49 10 chr9 60611605 60611707 -57250920 + MIR SINE MIR 27 132 -76 367 239 48 78 chr9 60611928 60612095 -57250532 + MER103 DNA DNA 4 165 -1 2260 111 0 0 chr9 60614491 60614789 -57247838 + AluSx SINE Alu 1 298 -14 242 326 170 15 chr9 60614801 60615071 -57247556 - L2 LINE L2 -867 2447 2136 410 273 22 50 chr9 60615292 60615431 -57247196 + L2 LINE L2 3174 3308 -5 321 202 167 0 chr9 60615478 60615562 -57247065 + MER5A DNA MER1_type 9 106 -83 971 160 17 44 chr9 60615773 60615954 -57246673 - MER5B DNA MER1_type 0 178 3 2323 156 39 21 chr9 60616775 60617212 -57245415 + L1M3 LINE L1 5377 5821 -362 190 295 252 14 chr9 60617271 60617410 -57245217 + L2 LINE L2 3142 3313 0 24 0 0 0 chr9 60617422 60617446 -57245181 + AT_rich Low_complexity Low_complexity 1 24 0 796 204 0 0 chr9 60617558 60617690 -57244937 + FLAM_C SINE Alu 2 133 0 479 186 10 0 chr9 60617690 60617792 -57244835 + GA-rich Low_complexity Low_complexity 4 106 0 745 191 6 22 chr9 60617913 60618096 -57244531 + GA-rich Low_complexity Low_complexity 1 180 0 1159 281 37 41 chr9 60618102 60618584 -57244043 + L1ME3A LINE L1 5383 5864 -306 1488 202 84 16 chr9 60618584 60618763 -57243864 - MER2 DNA MER2_type 0 344 179 2269 91 3 0 chr9 60618763 60619050 -57243577 - AluSp SINE Alu -14 299 12 1488 202 84 16 chr9 60619050 60619192 -57243435 - MER2 DNA MER2_type -165 179 1 1159 281 37 41 chr9 60619192 60619275 -57243352 + L1ME3A LINE L1 5864 5946 -224 512 220 53 33 chr9 60620007 60620157 -57242470 + MER103 DNA DNA 14 166 0 228 223 10 58 chr9 60620230 60620333 -57242294 + A-rich Low_complexity Low_complexity 2 99 0 2220 141 125 10 chr9 60621307 60621691 -57240936 + MSTA LTR MaLR 1 428 0 1632 172 0 8 chr9 60621876 60622143 -57240484 + AluJo SINE Alu 34 298 -14 1981 153 0 0 chr9 60622684 60622985 -57239642 - AluSx SINE Alu -11 301 1 288 145 43 51 chr9 60624218 60624335 -57238292 + (TA)n Simple_repeat Simple_repeat 2 117 0 919 219 5 0 chr9 60624764 60624979 -57237648 + L1P LINE L1 4970 5185 -961 450 157 0 0 chr9 60627240 60627323 -57235304 + (TG)n Simple_repeat Simple_repeat 2 84 0 2461 142 4 9 chr9 60627348 60627989 -57234638 + L1P4 LINE L1 4971 5606 -560 1744 151 36 23 chr9 60628545 60628849 -57233778 - AluSq SINE Alu -5 308 1 338 0 24 0 chr9 60629025 60629067 -57233560 + (TC)n Simple_repeat Simple_repeat 1 43 0 279 0 0 0 chr9 60629066 60629097 -57233530 + (CA)n Simple_repeat Simple_repeat 1 31 0 * 460 207 57 36 chr9 60629239 60629379 -57233248 - MER103 DNA DNA -2 164 22 451 223 18 18 chr9 60631878 60631990 -57230637 + MER103 DNA DNA 54 165 -1 962 158 0 55 chr9 60632888 60633071 -57229556 + AluJo SINE Alu 1 173 -139 276 149 0 0 chr9 60633101 60633148 -57229479 + (TG)n Simple_repeat Simple_repeat 2 48 0 443 254 133 8 chr9 60633149 60633389 -57229238 - L1ME4a LINE L1 -177 5944 5675 558 254 215 24 chr9 60633427 60633757 -57228870 - L2 LINE L2 -1210 2104 1712 2306 111 0 3 chr9 60634271 60634577 -57228050 + AluSq SINE Alu 1 305 -8 416 301 82 64 chr9 60635019 60635306 -57227321 + MLT1I LTR MaLR 75 370 -39 2101 104 0 69 chr9 60635306 60635624 -57227003 + AluSx SINE Alu 1 296 -16 416 301 82 64 chr9 60635624 60635665 -57226962 + MLT1I LTR MaLR 370 409 0 706 227 74 0 chr9 60635955 60636131 -57226496 - MER3 DNA MER1_type -19 190 2 4227 149 108 25 chr9 60637026 60637865 -57224762 + L1MC2 LINE L1 5434 6342 -2 342 0 0 0 chr9 60637943 60637981 -57224646 + (CA)n Simple_repeat Simple_repeat 1 38 0 1202 37 0 0 chr9 60638609 60638745 -57223882 + AluY SINE Alu 157 292 -19 437 281 8 25 chr9 60639636 60639757 -57222870 - L2 LINE L2 -7 3306 3188 422 338 44 10 chr9 60639812 60640016 -57222611 + L3 LINE CR1 1205 1415 -162 1940 221 70 67 chr9 60640529 60641139 -57221488 + MLT1E2 LTR MaLR 11 622 -4 1077 253 126 35 chr9 60641728 60642345 -57220282 + L2 LINE L2 2624 3313 0 305 112 37 0 chr9 60643668 60643727 -57218900 + L1ME3A LINE L1 5710 5775 -529 5988 113 92 34 chr9 60643742 60644520 -57218107 - Tigger3b DNA MER2_type -1797 1231 499 2385 88 0 19 chr9 60644520 60644827 -57217800 + AluSx SINE Alu 1 301 -11 2385 64 0 10 chr9 60644827 60645123 -57217504 + AluY SINE Alu 1 293 -18 480 35 0 0 chr9 60645123 60645181 -57217446 + (TA)n Simple_repeat Simple_repeat 2 59 0 5988 113 92 34 chr9 60645181 60645457 -57217170 - Tigger3b DNA MER2_type -2528 500 114 1138 245 31 62 chr9 60645485 60645869 -57216758 + L1ME3A LINE L1 5785 6156 -14 1060 251 80 71 chr9 60645936 60646163 -57216464 + L2 LINE L2 2787 3010 -303 765 265 98 0 chr9 60646163 60646367 -57216260 + MER58A DNA MER1_type 1 224 0 1060 251 80 71 chr9 60646367 60646663 -57215964 + L2 LINE L2 3010 3311 -2 451 135 27 0 chr9 60647138 60647212 -57215415 + L1MD2 LINE L1 6280 6355 -4 210 143 0 0 chr9 60647213 60647248 -57215379 + (CA)n Simple_repeat Simple_repeat 2 36 0 3595 197 34 25 chr9 60647718 60648484 -57214143 + L1MB8 LINE L1 5406 6178 0 698 229 112 19 chr9 60649429 60649643 -57212984 + MIR SINE MIR 29 262 0 419 177 138 62 chr9 60649669 60649799 -57212828 - L2 LINE L2 0 3313 3174 21 57 0 0 chr9 60650693 60650728 -57211899 + AT_rich Low_complexity Low_complexity 1 35 0 12902 141 13 122 chr9 60650952 60653937 -57208690 + L1PA7 LINE L1 9 2668 -3478 13055 93 2 1 chr9 60654095 60656651 -57205976 + L1PA7 LINE L1 3598 6150 -4 241 318 163 0 chr9 60656665 60656794 -57205833 + MIR3 SINE MIR 36 185 -23 1047 209 9 19 chr9 60656989 60657200 -57205427 - MER3 DNA MER1_type 0 209 1 2003 127 0 45 chr9 60657348 60657656 -57204971 + AluSq SINE Alu 6 299 -14 1204 134 5 35 chr9 60657783 60657984 -57204643 + AluJo SINE Alu 86 280 -32 320 321 28 73 chr9 60658291 60658509 -57204118 + L2 LINE L2 2888 3095 -177 529 114 13 0 chr9 60658736 60658815 -57203812 + L1MB3 LINE L1 6065 6144 -39 23 0 0 0 chr9 60659044 60659067 -57203560 + AT_rich Low_complexity Low_complexity 1 23 0 2494 57 0 0 chr9 60659067 60659363 -57203264 - AluY SINE Alu -15 296 1 235 318 178 16 chr9 60659522 60659651 -57202976 + L2 LINE L2 3123 3272 0 722 202 6 0 chr9 60659654 60659832 -57202795 + (TGGA)n Simple_repeat Simple_repeat 2 180 0 441 323 9 47 chr9 60662422 60662654 -57199973 + L2 LINE L2 2180 2402 -912 914 254 0 0 chr9 60662655 60662828 -57199799 + MER45A DNA AcHobo 1 173 -5 385 351 54 48 chr9 60662971 60663287 -57199340 + L2 LINE L2 2949 3266 -6 376 268 0 10 chr9 60664066 60664163 -57198464 + MER5A DNA MER1_type 10 105 -84 216 0 0 0 chr9 60664797 60664821 -57197806 + (CA)n Simple_repeat Simple_repeat 2 25 0 1991 125 17 3 chr9 60665039 60665327 -57197300 - AluJb SINE Alu -19 293 2 257 331 142 16 chr9 60666006 60666133 -57196494 - MIR SINE MIR -109 153 11 1153 218 19 19 chr9 60666171 60666432 -57196195 - MIR SINE MIR -1 261 1 180 176 0 0 chr9 60666748 60666782 -57195845 + (CA)n Simple_repeat Simple_repeat 1 34 0 949 269 94 20 chr9 60666851 60667254 -57195373 + MLT1L LTR MaLR 73 607 -8 301 218 132 56 chr9 60667270 60667418 -57195209 + MIR3 SINE MIR 3 157 -69 307 321 133 24 chr9 60667534 60667699 -57194928 - MIR3 SINE MIR -1 207 25 297 302 31 78 chr9 60667757 60667886 -57194741 - L2 LINE L2 0 3313 3191 233 237 0 34 chr9 60667894 60667953 -57194674 - L2 LINE L2 -2 3311 3255 444 324 111 19 chr9 60669264 60669471 -57193156 + MIR SINE MIR 25 250 -12 1615 58 106 0 chr9 60669773 60669981 -57192646 - MER30 DNA MER1_type 0 230 1 29 47 0 0 chr9 60670299 60670342 -57192285 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr9 60671039 60671060 -57191567 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr9 60671177 60671200 -57191427 + (A)n Simple_repeat Simple_repeat 1 23 0 23 0 0 0 chr9 60672633 60672656 -57189971 + GC_rich Low_complexity Low_complexity 1 23 0 394 269 188 50 chr9 60673339 60673659 -57188968 + MER115 DNA AcHobo 10 373 -320 235 319 42 0 chr9 60673756 60673828 -57188799 + LTR16A LTR ERVL 95 169 -281 305 257 55 0 chr9 60673946 60674055 -57188572 + MER115 DNA AcHobo 579 693 0 346 331 48 51 chr9 60675513 60675888 -57186739 + HERVL LTR ERVL 1207 1580 -4074 670 197 0 0 chr9 60676048 60676170 -57186457 - FLAM_A SINE Alu -1 141 20 2815 237 45 0 chr9 60676487 60677214 -57185413 + L1M4 LINE L1 4408 5167 -979 390 323 118 43 chr9 60677214 60677922 -57184705 + L1MA7 LINE L1 1 895 -6314 298 364 7 0 chr9 60678066 60678209 -57184418 + L1MA7 LINE L1 1235 1378 -5831 5552 229 23 78 chr9 60678313 60679459 -57183168 + L1MA7 LINE L1 1373 2581 -4627 2562 77 0 0 chr9 60679459 60679769 -57182858 - AluY SINE Alu -1 310 1 5552 229 23 78 chr9 60679769 60680187 -57182440 + L1MA7 LINE L1 2581 3021 -4187 1989 160 0 0 chr9 60680187 60680493 -57182134 + AluSx SINE Alu 1 306 -6 5552 229 23 78 chr9 60680493 60680810 -57181817 + L1MA7 LINE L1 3021 3227 -3981 1596 106 5 0 chr9 60680810 60681017 -57181610 + AluSc SINE Alu 86 293 -16 5552 229 23 78 chr9 60681017 60681221 -57181406 + L1MA7 LINE L1 3227 3441 -3767 242 119 48 0 chr9 60681279 60681321 -57181306 + L1MA7 LINE L1 3419 3462 -3746 204 224 8 56 chr9 60681321 60681446 -57181181 + (TATAA)n Simple_repeat Simple_repeat 1 119 0 282 135 0 0 chr9 60681459 60681511 -57181116 - L1 LINE L1 -3738 2408 2357 1663 224 8 8 chr9 60681559 60681943 -57180684 + L1MA7 LINE L1 3456 3839 -3369 285 86 0 0 chr9 60681943 60681978 -57180649 + U2 snRNA snRNA 1 35 -153 331 188 0 0 chr9 60681978 60682042 -57180585 + L1MA7 LINE L1 3826 3889 -3319 * 5467 164 19 13 chr9 60682038 60683014 -57179613 + L1MC2 LINE L1 5350 6331 -13 443 113 0 0 chr9 60683016 60683078 -57179549 + HY3 scRNA scRNA 3 64 -37 19571 170 12 6 chr9 60683078 60684800 -57177827 - L1PA14 LINE L1 -14 7585 5875 333 0 0 0 chr9 60684800 60684837 -57177790 + (TG)n Simple_repeat Simple_repeat 1 37 0 19571 170 12 6 chr9 60684837 60687581 -57175046 - L1PA14 LINE L1 -1724 5875 3093 14380 143 12 5 chr9 60687595 60690263 -57172364 - L1PA14 LINE L1 -4619 2962 1 279 41 102 20 chr9 60690264 60690313 -57172314 + HY3 scRNA scRNA 49 101 0 6253 204 49 29 chr9 60741741 60742056 -57120571 + L1MB8 LINE L1 3357 3664 -2482 692 174 91 0 chr9 60742056 60742177 -57120450 + FLAM_C SINE Alu 2 133 0 6253 204 49 29 chr9 60742177 60742558 -57120069 + L1MB8 LINE L1 3664 4036 -2110 1399 96 10 0 chr9 60742558 60742766 -57119861 - L1PA13 LINE L1 -3 6160 5951 6253 204 49 29 chr9 60742766 60743827 -57118800 + L1MB8 LINE L1 4036 5150 -996 10543 171 42 17 chr9 60743831 60747023 -57115604 + L1MA7 LINE L1 4066 7351 -2 27 0 0 0 chr9 60747223 60747250 -57115377 + AT_rich Low_complexity Low_complexity 1 27 0 3676 159 121 8 chr9 60747263 60748164 -57114463 + L1MB8 LINE L1 5161 6162 -16 851 220 6 0 chr9 60748195 60748354 -57114273 - FRAM SINE Alu -6 160 1 1892 144 25 0 chr9 60749740 60750018 -57112609 - AluJb SINE Alu -25 287 3 332 272 59 7 chr9 60750020 60750156 -57112471 + L2 LINE L2 1998 2140 -1174 1957 95 92 11 chr9 60750172 60750445 -57112182 + AluSc SINE Alu 1 295 -14 189 121 0 0 chr9 60750481 60750514 -57112113 + (TCC)n Simple_repeat Simple_repeat 2 34 0 371 216 144 18 chr9 60750856 60750967 -57111660 + MIR SINE MIR 27 151 -111 1157 255 147 14 chr9 60751482 60751925 -57110702 + MLT1J LTR MaLR 2 503 -8 462 251 12 12 chr9 60752061 60752228 -57110399 + L1M4 LINE L1 2380 2546 -3600 1804 143 0 15 chr9 60752229 60752501 -57110126 + AluSq SINE Alu 1 268 -45 399 31 62 47 chr9 60752552 60752616 -57110011 + MLT1B LTR MaLR 1 65 -325 4115 161 44 2 chr9 60752976 60753339 -57109288 + L1MB2 LINE L1 5317 5663 -508 2351 102 0 3 chr9 60753339 60753644 -57108983 + AluSx SINE Alu 1 304 -8 4115 161 44 2 chr9 60753644 60754089 -57108538 + L1MB2 LINE L1 5663 6164 -7 7658 27 0 0 chr9 60754758 60756192 -57106435 - L1PA3 LINE L1 0 6155 4720 2269 109 0 3 chr9 60756385 60756678 -57105949 - AluSq SINE Alu -21 292 1 2335 109 7 0 chr9 60757109 60757413 -57105214 + AluSx SINE Alu 1 306 -6 2421 80 0 0 chr9 60758513 60758814 -57103813 + AluSq SINE Alu 1 301 -12 1977 128 7 14 chr9 60759122 60759419 -57103208 - AluSx SINE Alu -15 297 3 2293 102 0 3 chr9 60759800 60760094 -57102533 - AluSg SINE Alu -17 293 1 2543 52 0 0 chr9 60760330 60760636 -57101991 - AluY SINE Alu -5 306 1 1192 241 109 24 chr9 60761221 60761319 -57101308 + L1ME3 LINE L1 5667 5755 -407 1839 173 0 3 chr9 60761319 60761620 -57101007 + AluJo SINE Alu 2 301 -11 1192 241 109 24 chr9 60761620 60761681 -57100946 + L1ME3 LINE L1 5755 5809 -353 2271 132 0 0 chr9 60761681 60761985 -57100642 + AluSx SINE Alu 1 304 -8 1192 241 109 24 chr9 60761985 60762281 -57100346 + L1ME3 LINE L1 5809 6162 0 663 134 0 0 chr9 60762375 60762472 -57100155 + AluSg/x SINE Alu 207 303 -6 869 150 0 0 chr9 60762569 60762696 -57099931 - U4 snRNA snRNA -18 127 1 350 200 50 80 chr9 60763566 60763666 -57098961 - L2 LINE L2 0 3313 3217 2372 97 0 0 chr9 60763740 60764040 -57098587 + AluSx SINE Alu 1 300 -12 2169 92 0 11 chr9 60764043 60764326 -57098301 + AluSc SINE Alu 15 294 -15 1473 220 143 26 chr9 60765203 60765693 -57096934 + LTR10B LTR ERV1 1 547 0 243 156 0 22 chr9 60766349 60766394 -57096233 - MLT1D LTR MaLR -210 295 252 417 206 33 33 chr9 60766394 60766486 -57096141 - MLT1D LTR MaLR -411 94 3 207 387 28 14 chr9 60766489 60766631 -57095996 - L2 LINE L2 -1418 1896 1753 929 163 39 0 chr9 60766675 60766828 -57095799 + FRAM SINE Alu 1 159 -17 638 307 142 48 chr9 60767714 60768426 -57094201 - L2 LINE L2 -2 3311 2550 232 302 47 0 chr9 60768592 60768678 -57093949 - MIR SINE MIR -9 253 164 310 242 0 44 chr9 60769006 60769097 -57093530 - MLT1K LTR MaLR -325 263 177 562 334 22 66 chr9 60769196 60769561 -57093066 + L2 LINE L2 2923 3271 -1 202 317 188 0 chr9 60770693 60770794 -57091833 + MIR SINE MIR 91 210 -52 265 200 0 113 chr9 60770953 60771033 -57091594 - MIR3 SINE MIR -32 176 106 183 222 44 22 chr9 60771070 60771115 -57091512 - L2 LINE L2 -19 3253 3208 2164 100 27 0 chr9 60771226 60771527 -57091100 + AluY SINE Alu 1 309 -2 465 264 73 45 chr9 60772358 60772578 -57090049 - MLT1H LTR MaLR -292 257 32 4659 194 7 7 chr9 60772708 60773670 -57088957 + L1 LINE L1 4129 5090 -1056 2932 76 3 0 chr9 60773670 60774024 -57088603 + THE1A LTR MaLR 1 355 0 5328 85 15 14 chr9 60774025 60774447 -57088180 + THE1A-int LTR MaLR 2 427 -1153 2323 74 0 17 chr9 60774447 60774744 -57087883 + AluSg SINE Alu 1 292 -18 5328 85 15 14 chr9 60774744 60775052 -57087575 + THE1A-int LTR MaLR 427 733 -847 2105 66 16 66 chr9 60775052 60775186 -57087441 + L1PB1 LINE L1 5843 5982 -169 2207 124 0 0 chr9 60775186 60775485 -57087142 + AluSq SINE Alu 1 299 -14 2105 66 16 66 chr9 60775485 60775668 -57086959 + L1PB1 LINE L1 5982 6144 -7 707 120 0 56 chr9 60775718 60775843 -57086784 + L1MB2 LINE L1 6038 6155 -16 1725 126 16 12 chr9 60775843 60776097 -57086530 - L1PB4 LINE L1 -8 6148 5893 1536 179 198 15 chr9 60776166 60776309 -57086318 + MLT1F1 LTR MaLR 1 117 -450 198 71 0 0 chr9 60776309 60776337 -57086290 + (TCTCTG)n Simple_repeat Simple_repeat 3 30 0 1536 179 198 15 chr9 60776337 60776645 -57085982 + MLT1F1 LTR MaLR 117 562 -5 683 211 9 0 chr9 60776735 60776849 -57085778 - FLAM_C SINE Alu -26 117 3 638 291 48 88 chr9 60777897 60778087 -57084540 - L1ME3A LINE L1 -27 6143 5947 324 0 0 0 chr9 60778087 60778123 -57084504 + (TG)n Simple_repeat Simple_repeat 2 37 0 638 291 48 88 chr9 60778123 60778480 -57084147 - L1ME3A LINE L1 -223 5947 5616 7665 56 1 6 chr9 60778495 60779874 -57082753 + L1PA8 LINE L1 4789 6164 -8 334 195 11 0 chr9 60780120 60780207 -57082420 - L1ME3A LINE L1 -1087 5059 4972 449 241 138 7 chr9 60780858 60781003 -57081624 + MER5B DNA MER1_type 3 166 -12 256 148 49 33 chr9 60781013 60781074 -57081553 - MER5A DNA MER1_type 0 189 128 3046 170 61 16 chr9 60781076 60781920 -57080707 + L1MB8 LINE L1 4975 5859 -319 1710 216 94 17 chr9 60782284 60782568 -57080059 + MER90 LTR ERV1 3 264 -350 2404 84 0 0 chr9 60782568 60782866 -57079761 - AluSc SINE Alu -10 299 2 1710 216 94 17 chr9 60782866 60783101 -57079526 + MER90 LTR ERV1 264 604 -10 229 333 0 0 chr9 60783095 60783161 -57079466 + Charlie8 DNA MER1_type 198 263 -2154 * 201 200 40 0 chr9 60784138 60784188 -57078439 + G-rich Low_complexity Low_complexity 1 52 0 655 223 132 34 chr9 60784371 60784538 -57078089 - MER20B DNA MER1_type 0 783 634 2431 28 42 3 chr9 60784538 60784823 -57077804 + AluY SINE Alu 1 296 -15 655 223 132 34 chr9 60784823 60785020 -57077607 - MER20B DNA MER1_type -149 634 361 2168 96 31 0 chr9 60785023 60785315 -57077312 + AluSx SINE Alu 1 301 -11 770 208 80 19 chr9 60785523 60785735 -57076892 - L1MB7 LINE L1 -29 6155 5931 343 300 47 24 chr9 60786114 60786284 -57076343 - MER5B DNA MER1_type -4 174 1 295 271 27 13 chr9 60787201 60787345 -57075282 - MIR SINE MIR -62 146 40 2020 128 0 14 chr9 60788538 60788826 -57073801 + AluSx SINE Alu 1 284 -28 1746 156 33 36 chr9 60788862 60789163 -57073464 - AluJo SINE Alu -12 300 1 683 260 86 38 chr9 60789352 60789771 -57072856 - MER113 DNA MER1_type? -9 512 74 1247 200 75 11 chr9 60790318 60790598 -57072029 + AluJo SINE Alu 1 298 -14 313 164 18 55 chr9 60790598 60790708 -57071919 + GA-rich Low_complexity Low_complexity 1 106 0 640 275 92 13 chr9 60791014 60791243 -57071384 - MIR SINE MIR -11 251 18 23 33 0 0 chr9 60791884 60791914 -57070713 + AT_rich Low_complexity Low_complexity 1 30 0 359 206 14 154 chr9 60792058 60792146 -57070481 - L1MC5 LINE L1 -36 7925 7883 2437 68 0 10 chr9 60792146 60792441 -57070186 - AluSp SINE Alu -21 292 1 359 206 14 154 chr9 60792441 60792566 -57070061 - L1MC5 LINE L1 -78 7883 7742 665 297 100 16 chr9 60792591 60792901 -57069726 - L1M4 LINE L1 -2392 3754 3419 344 48 0 0 chr9 60793516 60793558 -57069069 - MER4E LTR ERV1 -73 693 652 400 232 139 82 chr9 60793559 60794107 -57068520 - L1M4 LINE L1 -3006 3140 2562 408 160 0 110 chr9 60794352 60794382 -57068245 - LTR40b LTR ERVL -373 89 57 2142 167 119 80 chr9 60794382 60794799 -57067828 - MLT1D LTR MaLR 0 505 106 2607 61 3 0 chr9 60794799 60795109 -57067518 - AluY SINE Alu 0 311 1 1689 188 3 7 chr9 60795115 60795419 -57067208 - AluJo SINE Alu -9 303 1 2142 167 119 80 chr9 60795419 60795480 -57067147 - MLT1D LTR MaLR -403 102 1 408 160 0 110 chr9 60795480 60795549 -57067078 - LTR40b LTR ERVL -405 57 1 1278 193 37 8 chr9 60795549 60795792 -57066835 - HERVL40 LTR ERVL -3 5527 5278 490 319 21 11 chr9 60795866 60796057 -57066570 - MER89-int LTR ERV1 -412 6389 6197 1159 254 7 4 chr9 60796275 60796555 -57066072 - AluY SINE Alu -16 285 5 1268 167 33 14 chr9 60797616 60797831 -57064796 + MER20 DNA MER1_type 1 219 0 752 207 122 52 chr9 60797857 60798128 -57064499 + L1MD2 LINE L1 6055 6344 -15 439 103 44 0 chr9 60798307 60798375 -57064252 - MADE1 DNA Mariner 0 80 10 269 283 123 0 chr9 60798723 60798739 -57063888 - L1MA10 LINE L1 0 6334 6319 1655 218 122 4 chr9 60798739 60799540 -57063087 - L1ME1 LINE L1 -7 6159 5266 1832 136 31 3 chr9 60799764 60799931 -57062696 - AluSx SINE Alu -17 295 115 234 0 0 0 chr9 60799931 60799957 -57062670 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1832 136 31 3 chr9 60799957 60800076 -57062551 - AluSx SINE Alu -197 115 1 21 0 0 0 chr9 60800558 60800579 -57062048 + AT_rich Low_complexity Low_complexity 1 21 0 670 219 183 18 chr9 60800904 60801123 -57061504 + L1M4 LINE L1 4753 5007 -1139 1544 165 34 34 chr9 60801241 60801538 -57061089 - AluJo SINE Alu -4 298 2 599 135 10 0 chr9 60801538 60801634 -57060993 - L1MD3 LINE L1 -1151 6844 6748 2043 134 3 0 chr9 60801826 60802132 -57060495 + AluSx SINE Alu 1 307 -5 465 252 64 64 chr9 60802243 60802461 -57060166 + MLT1K LTR MaLR 368 585 -3 1895 112 69 4 chr9 60802650 60802927 -57059700 + AluSc SINE Alu 1 295 -14 24 0 0 0 chr9 60803251 60803275 -57059352 + AT_rich Low_complexity Low_complexity 1 24 0 5440 91 11 0 chr9 60804239 60804943 -57057684 + L1PA13 LINE L1 5452 6163 0 189 0 0 0 chr9 60805132 60805153 -57057474 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 1028 138 117 5 chr9 60805163 60805351 -57057276 + MER2 DNA MER2_type 136 344 -1 2080 126 14 3 chr9 60806075 60806369 -57056258 - AluSx SINE Alu -15 297 1 1382 139 22 0 chr9 60806428 60806651 -57055976 - L1MA4 LINE L1 -3 6297 6070 448 148 107 49 chr9 60807198 60807320 -57055307 + MER3 DNA MER1_type 40 168 -41 2186 115 3 3 chr9 60807652 60807957 -57054670 - AluSx SINE Alu -3 309 5 515 131 48 18 chr9 60808963 60809078 -57053549 - L1P5 LINE L1 -564 5587 5469 2187 103 3 10 chr9 60809267 60809569 -57053058 - AluSc SINE Alu -9 300 1 204 156 0 0 chr9 60809696 60809728 -57052899 + L2 LINE L2 2932 2963 -309 217 274 0 16 chr9 60810022 60810084 -57052543 + L2 LINE L2 3195 3255 -58 1988 104 117 3 chr9 60810186 60810494 -57052133 - THE1C-int LTR MaLR -1237 343 1 1897 131 125 12 chr9 60810494 60810831 -57051796 - THE1C LTR MaLR 0 375 1 4371 84 59 12 chr9 60811433 60812114 -57050513 - L1MA2 LINE L1 0 6304 5592 12752 162 32 32 chr9 60812114 60814910 -57047717 - L1 LINE L1 -1168 4978 2183 489 239 165 18 chr9 60815203 60815421 -57047206 + L1ME3A LINE L1 5478 5727 -435 330 307 53 9 chr9 60815427 60815541 -57047086 + L1ME3A LINE L1 5814 5932 -238 1059 202 20 10 chr9 60815549 60815752 -57046875 + AluJb SINE Alu 106 310 -2 1870 130 16 52 chr9 60816242 60816550 -57046077 - AluSx SINE Alu -15 297 1 230 326 204 0 chr9 60816777 60816924 -57045703 - L1ME LINE L1 -458 5663 5487 276 227 208 19 chr9 60817461 60817615 -57045012 - MER112 DNA MER1_type -9 251 69 434 180 25 82 chr9 60818197 60818319 -57044308 - MIR SINE MIR -18 244 130 2070 139 20 0 chr9 60818503 60818804 -57043823 - AluSx SINE Alu -3 309 3 2304 115 0 0 chr9 60818896 60819201 -57043426 + AluSq SINE Alu 1 305 -8 326 288 102 9 chr9 60819689 60819904 -57042723 - L1ME LINE L1 -297 5824 5590 911 293 93 44 chr9 60819917 60820504 -57042123 + L2 LINE L2 2434 3047 -225 183 289 211 0 chr9 60820524 60820600 -57042027 + L2 LINE L2 3214 3305 -8 21 57 0 0 chr9 60821265 60821300 -57041327 + AT_rich Low_complexity Low_complexity 1 35 0 180 0 0 0 chr9 60821898 60821918 -57040709 + (TTTA)n Simple_repeat Simple_repeat 4 23 0 1484 110 63 0 chr9 60822022 60822259 -57040368 - MLT2A2 LTR ERVL -201 252 1 21539 59 8 4 chr9 60822259 60825058 -57037569 - HERVL-A2 LTR ERVL 0 5654 2845 2758 45 20 0 chr9 60825048 60825405 -57037222 - HERVL-A1 LTR ERVL -5290 364 1 * 268 98 78 0 chr9 60825405 60825456 -57037171 - MLT2A1 LTR ERVL 0 453 399 204 154 0 0 chr9 60825457 60825509 -57037118 + (TA)n Simple_repeat Simple_repeat 2 53 0 2470 85 49 23 chr9 60825516 60825905 -57036722 - MLT2A1 LTR ERVL -45 399 1 849 216 0 13 chr9 60825934 60826087 -57036540 + FRAM SINE Alu 1 151 -15 2388 68 0 13 chr9 60827056 60827363 -57035264 + AluY SINE Alu 1 303 -8 196 268 152 18 chr9 60827782 60827894 -57034733 - MIR SINE MIR -3 259 133 2313 91 3 3 chr9 60828451 60828747 -57033880 + AluSq SINE Alu 1 296 -17 263 263 127 25 chr9 60828837 60828955 -57033672 - MIR SINE MIR -55 153 24 2119 97 40 3 chr9 60829850 60830149 -57032478 - AluSq SINE Alu -1 312 3 359 300 73 0 chr9 60830397 60830507 -57032120 + MIR SINE MIR 24 141 -121 386 271 83 8 chr9 60830579 60830646 -57031981 - MER5B DNA MER1_type -35 143 82 901 185 0 31 chr9 60830646 60830808 -57031819 - FRAM SINE Alu -9 157 1 386 271 83 8 chr9 60830808 60830873 -57031754 - MER5B DNA MER1_type -96 82 1 343 247 78 71 chr9 60831106 60831260 -57031367 - Charlie8 DNA MER1_type -2262 155 1 2524 50 0 7 chr9 60831287 60831590 -57031037 + AluY SINE Alu 1 301 -10 22 0 0 0 chr9 60834335 60834357 -57028270 + AT_rich Low_complexity Low_complexity 1 22 0 26 50 0 0 chr9 60834518 60834558 -57028069 + AT_rich Low_complexity Low_complexity 1 40 0 200 182 0 18 chr9 60834625 60834680 -57027947 + (TA)n Simple_repeat Simple_repeat 1 54 0 26 30 0 0 chr9 60834788 60834821 -57027806 + AT_rich Low_complexity Low_complexity 1 33 0 193 182 15 15 chr9 60834856 60834922 -57027705 + (TA)n Simple_repeat Simple_repeat 1 66 0 226 215 62 0 chr9 60834924 60834989 -57027638 + (TTATA)n Simple_repeat Simple_repeat 2 70 0 206 180 16 0 chr9 60834989 60835050 -57027577 + (TA)n Simple_repeat Simple_repeat 1 62 0 27 0 0 0 chr9 60835084 60835111 -57027516 + AT_rich Low_complexity Low_complexity 1 27 0 438 179 211 0 chr9 60836524 60836647 -57025980 - MER97a DNA MER1_type? -716 178 30 23 0 0 0 chr9 60837115 60837138 -57025489 + AT_rich Low_complexity Low_complexity 1 23 0 3995 26 6 0 chr9 60837329 60837797 -57024830 + L1PA3 LINE L1 5682 6152 -3 21 0 0 0 chr9 60837797 60837818 -57024809 + AT_rich Low_complexity Low_complexity 1 21 0 2201 91 21 0 chr9 60837832 60838118 -57024509 + AluSg SINE Alu 1 292 -18 3000 183 64 7 chr9 60840968 60841658 -57020969 - L1M4 LINE L1 -1113 5033 4305 229 340 75 20 chr9 60842040 60842187 -57020440 - L2 LINE L2 -1 3271 3117 357 313 188 17 chr9 60842193 60842369 -57020258 - L2 LINE L2 -1 3271 3066 746 107 0 16 chr9 60842382 60842503 -57020124 - L1PA16 LINE L1 -243 5923 5805 251 27 0 27 chr9 60842553 60842590 -57020037 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 562 233 25 148 chr9 60842600 60842837 -57019790 - L2 LINE L2 -2394 920 740 204 40 0 0 chr9 60842837 60842862 -57019765 + (CATA)n Simple_repeat Simple_repeat 2 26 0 562 233 25 148 chr9 60842862 60842981 -57019646 - L2 LINE L2 -2574 740 608 760 136 0 0 chr9 60843353 60843471 -57019156 + L1MA2 LINE L1 6187 6304 0 2063 117 3 0 chr9 60843480 60843763 -57018864 - AluY SINE Alu -25 286 3 32 0 0 0 chr9 60843766 60843798 -57018829 + AT_rich Low_complexity Low_complexity 1 32 0 279 0 0 0 chr9 60843971 60844002 -57018625 + (CA)n Simple_repeat Simple_repeat 2 32 0 1071 301 84 63 chr9 60844166 60844974 -57017653 + HAL1 LINE L1 1 825 -1682 1853 160 3 7 chr9 60844990 60845277 -57017350 + AluJo SINE Alu 1 286 -26 601 153 0 117 chr9 60845295 60845369 -57017258 - FLAM_A SINE Alu -189 122 69 4455 63 33 0 chr9 60845369 60845962 -57016665 + L1PA6 LINE L1 5547 6158 0 601 153 0 117 chr9 60845962 60846023 -57016604 - FLAM_A SINE Alu -242 69 2 2017 117 3 3 chr9 60846155 60846438 -57016189 + AluSx SINE Alu 24 306 -6 1014 233 50 66 chr9 60846493 60846595 -57016032 + HAL1 LINE L1 1654 1756 -751 1941 160 3 31 chr9 60846595 60846914 -57015713 + AluSx SINE Alu 1 310 -2 1014 233 50 66 chr9 60846914 60846972 -57015655 + HAL1 LINE L1 1756 1813 -694 1183 92 174 0 chr9 60846972 60847168 -57015459 - MER30 DNA MER1_type 0 230 1 1014 233 50 66 chr9 60847168 60847384 -57015243 + HAL1 LINE L1 1813 2025 -482 1477 185 43 21 chr9 60847387 60847668 -57014959 + AluJo SINE Alu 3 289 -23 2118 105 3 0 chr9 60847713 60847998 -57014629 + AluY SINE Alu 1 286 -25 760 136 0 0 chr9 60848007 60848125 -57014502 - L1MA2 LINE L1 0 6304 6187 1698 258 46 76 chr9 60848497 60848616 -57014011 + L2 LINE L2 608 729 -2585 204 40 0 0 chr9 60848616 60848641 -57013986 + (TATG)n Simple_repeat Simple_repeat 2 26 0 1698 258 46 76 chr9 60848641 60849285 -57013342 + L2 LINE L2 729 1348 -1966 473 251 133 69 chr9 60849316 60849714 -57012913 - MLT1J2 LTR MaLR -21 425 3 396 282 39 0 chr9 60849716 60849819 -57012808 + L2 LINE L2 1381 1487 -1827 397 247 32 0 chr9 60850188 60850281 -57012346 - MER5A DNA MER1_type -85 104 9 332 209 81 23 chr9 60851316 60851402 -57011225 + MIR SINE MIR 26 116 -146 326 313 63 56 chr9 60851933 60851957 -57010670 + L1M2 LINE L1 857 879 -5970 243 0 0 0 chr9 60851957 60851984 -57010643 + (CCCCCG)n Simple_repeat Simple_repeat 3 29 0 326 313 63 56 chr9 60851984 60852243 -57010384 + L1M2 LINE L1 879 1142 -5707 1871 100 47 57 chr9 60853617 60853918 -57008709 - AluSq SINE Alu -15 298 1 225 0 0 0 chr9 60854225 60854250 -57008377 + (TG)n Simple_repeat Simple_repeat 2 26 0 855 132 0 22 chr9 60854412 60854548 -57008079 + FLAM_C SINE Alu 1 133 0 2294 92 0 0 chr9 60854639 60854932 -57007695 - AluSc SINE Alu -16 293 1 288 311 61 40 chr9 60855353 60855501 -57007126 - L2 LINE L2 -188 3084 2934 1632 204 7 3 chr9 60855702 60856006 -57006621 - AluJb SINE Alu -7 305 1 643 219 8 8 chr9 60856224 60856347 -57006280 - FLAM_A SINE Alu -9 124 2 1808 150 36 0 chr9 60857183 60857463 -57005164 + AluJb SINE Alu 1 290 -22 420 169 0 0 chr9 60857463 60857540 -57005087 + (TA)n Simple_repeat Simple_repeat 1 77 0 244 213 0 43 chr9 60857544 60857638 -57004989 + L1MC4 LINE L1 6614 6703 -1339 1521 150 150 19 chr9 60858731 60859038 -57003589 + MER7A DNA MER2_type 2 346 0 309 245 116 3 chr9 60859038 60859194 -57003433 - MIR SINE MIR -16 246 20 1944 138 0 14 chr9 60859719 60860010 -57002617 + AluJo SINE Alu 9 295 -17 559 277 117 38 chr9 60860752 60861095 -57001532 - MLT1I LTR MaLR -27 382 13 1922 155 3 3 chr9 60861218 60861509 -57001118 - AluSx SINE Alu -21 291 1 248 200 0 67 chr9 60861870 60861930 -57000697 + HAL1 LINE L1 4 59 -2448 459 261 62 15 chr9 60861947 60862077 -57000550 + MLT1F LTR MaLR 1 136 -406 283 345 0 70 chr9 60862448 60862619 -57000008 + MIR3 SINE MIR 29 187 -21 204 143 29 0 chr9 60863463 60863498 -56999129 + GA-rich Low_complexity Low_complexity 4 39 0 282 299 197 0 chr9 60863530 60863657 -56998970 + L2 LINE L2 3121 3272 0 1926 169 0 0 chr9 60863694 60863989 -56998638 - AluJb SINE Alu -17 295 1 231 258 92 71 chr9 60864008 60864334 -56998293 - L1ME4a LINE L1 -2 6119 5787 6030 70 48 42 chr9 60864340 60865288 -56997339 - SVA Other Other 0 1386 433 1452 91 11 80 chr9 60865305 60865679 -56996948 - SVA Other Other -520 866 519 5918 64 20 54 chr9 60865707 60866601 -56996026 - SVA Other Other -520 866 3 1623 154 96 7 chr9 60866701 60866973 -56995654 - AluSq SINE Alu -17 296 1 1725 151 11 21 chr9 60866975 60867260 -56995367 - AluJo SINE Alu -13 299 18 2164 119 0 10 chr9 60867322 60867625 -56995002 - AluSg SINE Alu -10 300 1 241 59 29 0 chr9 60868314 60868348 -56994279 - MADE1 DNA Mariner -45 35 1 1889 183 45 31 chr9 60868390 60868837 -56993790 - MLT1C LTR MaLR -2 465 13 1907 152 72 48 chr9 60868841 60869188 -56993439 - MER57A LTR ERV1 -9 394 36 2184 95 16 7 chr9 60869188 60869492 -56993135 + AluSx SINE Alu 1 307 -5 1907 152 72 48 chr9 60869492 60869520 -56993107 - MER57A LTR ERV1 -367 36 10 322 167 0 0 chr9 60869533 60869581 -56993046 - MER66B LTR ERV1 -141 345 298 1695 176 0 35 chr9 60869838 60870150 -56992477 - AluJb SINE Alu -9 303 3 21 0 0 0 chr9 60870417 60870438 -56992189 + AT_rich Low_complexity Low_complexity 1 21 0 1783 147 11 7 chr9 60871018 60871304 -56991323 + AluJo SINE Alu 11 297 -15 2268 92 14 0 chr9 60873057 60873352 -56989275 + AluSp SINE Alu 1 299 -14 958 145 0 0 chr9 60873592 60873723 -56988904 + FLAM_C SINE Alu 1 131 -2 348 300 64 39 chr9 60873911 60873970 -56988657 + HAL1b LINE L1 496 552 -796 1453 155 155 11 chr9 60873970 60874235 -56988392 + AluJo SINE Alu 1 303 -9 348 300 64 39 chr9 60874235 60874408 -56988219 + HAL1b LINE L1 552 734 -614 253 98 49 0 chr9 60874557 60874598 -56988029 + L1MB7 LINE L1 6142 6184 0 2053 97 19 39 chr9 60874644 60874955 -56987672 - AluSx SINE Alu -7 305 1 1780 168 3 31 chr9 60875617 60875938 -56986689 - AluJb SINE Alu 0 312 1 382 309 83 49 chr9 60877593 60877797 -56984830 - MIR SINE MIR -32 230 20 8206 191 105 36 chr9 60878869 60880843 -56981784 - Cheshire DNA MER1_type 0 2420 278 1687 167 14 3 chr9 60880843 60881130 -56981497 + AluJb SINE Alu 6 295 -17 8206 191 105 36 chr9 60881130 60881346 -56981281 - Cheshire DNA MER1_type -2142 278 78 2095 121 0 31 chr9 60881358 60881680 -56980947 - AluSx SINE Alu 0 312 1 1903 150 31 0 chr9 60881694 60881987 -56980640 - AluSx SINE Alu -10 302 1 354 306 0 0 chr9 60881990 60882075 -56980552 - Cheshire DNA MER1_type -2331 89 5 10518 128 30 22 chr9 60882095 60883806 -56978821 + Tigger1 DNA MER2_type 24 1747 -671 811 201 0 47 chr9 60883806 60883975 -56978652 + FRAM SINE Alu 1 161 -15 2770 139 228 5 chr9 60883975 60884528 -56978099 + Tigger1 DNA MER2_type 1736 2411 -7 625 251 139 0 chr9 60884902 60885089 -56977538 - MIR SINE MIR -49 213 1 10295 85 9 2 chr9 60886296 60887571 -56975056 - HSMAR1 DNA Mariner 0 1287 4 2427 112 6 37 chr9 60887573 60887921 -56974706 - MER1B DNA MER1_type 0 337 1 349 321 58 50 chr9 60888267 60888507 -56974120 - L2 LINE L2 -508 2806 2565 2290 102 7 0 chr9 60888816 60889111 -56973516 + AluSx SINE Alu 1 297 -15 419 230 180 51 chr9 60889408 60889586 -56973041 - MER63A DNA MER1_type -9 201 1 684 253 16 38 chr9 60889801 60889985 -56972642 + MER58A DNA MER1_type 3 182 -42 247 123 0 7 chr9 60889985 60890042 -56972585 + HSMAR1 DNA Mariner 1 56 -24 309 26 0 0 chr9 60890278 60890316 -56972311 + (CA)n Simple_repeat Simple_repeat 2 39 0 297 287 132 24 chr9 60890365 60890532 -56972095 - L2 LINE L2 -221 3051 2867 1841 208 59 111 chr9 60893790 60894358 -56968269 - L1ME2 LINE L1 -29 6135 5539 2104 84 24 30 chr9 60894358 60894654 -56967973 + AluSq SINE Alu 1 294 -19 227 100 0 0 chr9 60894657 60894687 -56967940 + U6 snRNA snRNA 1 30 -77 1841 208 59 111 chr9 60894687 60894817 -56967810 - L1ME2 LINE L1 -627 5537 5442 2077 102 16 23 chr9 60895054 60895358 -56967269 - AluSg SINE Alu -8 302 1 24 0 0 0 chr9 60895624 60895648 -56966979 + AT_rich Low_complexity Low_complexity 1 24 0 2001 124 44 47 chr9 60896302 60896664 -56965963 - MER46B DNA MER2_type 0 236 1 805 193 161 18 chr9 60897142 60897422 -56965205 + MER33 DNA MER1_type 1 320 -4 3304 184 70 19 chr9 60897577 60898310 -56964317 - L1MB7 LINE L1 0 6184 5415 1545 195 172 0 chr9 60898385 60898821 -56963806 + Charlie1b DNA MER1_type 1 511 -12 528 331 135 35 chr9 60898877 60899337 -56963290 + L2 LINE L2 2587 3092 -180 187 175 125 0 chr9 60899410 60899450 -56963177 + L2 LINE L2 3174 3218 -54 205 243 57 71 chr9 60899622 60899692 -56962935 + L2 LINE L2 2911 2979 -334 726 170 44 22 chr9 60899696 60899831 -56962796 - MER105 DNA DNA -4 200 63 526 186 68 42 chr9 60899834 60899952 -56962675 + MER63 DNA MER1_type 2 748 -88 396 198 293 0 chr9 60900054 60900160 -56962467 + MER58B DNA MER1_type 202 338 -3 1071 194 100 35 chr9 60900239 60900256 -56962371 - MER33 DNA MER1_type -2273 312 298 1121 181 60 77 chr9 60900256 60900554 -56962073 + AluJo SINE Alu 2 294 -8 1071 194 100 35 chr9 60900554 60900619 -56962008 - MER33 DNA MER1_type -2287 298 239 2789 143 19 15 chr9 60900619 60900971 -56961656 - L1MB3 LINE L1 -1 6182 5826 1921 138 13 13 chr9 60900971 60901269 -56961358 - AluJb SINE Alu -14 298 1 2789 143 19 15 chr9 60901269 60901383 -56961244 - L1MB3 LINE L1 -357 5826 5714 1071 194 100 35 chr9 60901383 60901588 -56961039 - MER33 DNA MER1_type -2346 239 5 195 242 167 33 chr9 60901740 60901860 -56960767 - MIR SINE MIR -1 261 126 2121 119 7 3 chr9 60901864 60902166 -56960461 + AluSp SINE Alu 1 303 -10 1069 146 6 28 chr9 60902169 60902321 -56960306 + AluSg/x SINE Alu 124 273 -37 2092 140 0 3 chr9 60902321 60902628 -56959999 - AluSg SINE Alu -4 306 1 1069 146 6 28 chr9 60902628 60902653 -56959974 + AluSg/x SINE Alu 273 297 -13 212 256 77 13 chr9 60902656 60902734 -56959893 - MIR SINE MIR -132 130 48 753 190 0 0 chr9 60902824 60902940 -56959687 + FLAM_A SINE Alu 1 116 -17 276 225 108 54 chr9 60903085 60903196 -56959431 + L2 LINE L2 3197 3313 0 1075 165 0 130 chr9 60903240 60903494 -56959133 - AluJb SINE Alu -10 302 82 609 142 88 0 chr9 60903598 60903711 -56958916 + L1MA7 LINE L1 6150 6272 -19 1875 100 0 0 chr9 60903711 60903951 -56958676 + AluSc SINE Alu 51 290 -19 2069 122 3 7 chr9 60904401 60904697 -56957930 + AluSg SINE Alu 1 295 -15 476 273 109 0 chr9 60905968 60906096 -56956531 - MIR SINE MIR -75 187 46 2370 99 3 0 chr9 60907016 60907328 -56955299 - AluSp SINE Alu 0 313 1 281 89 22 0 chr9 60908686 60908731 -56953896 + (TA)n Simple_repeat Simple_repeat 2 47 0 2254 108 3 0 chr9 60908735 60909040 -56953587 - AluSx SINE Alu -3 309 4 822 193 0 66 chr9 60909130 60909311 -56953316 - FRAM SINE Alu -7 169 1 1058 246 174 31 chr9 60909353 60909979 -56952648 - L1ME3A LINE L1 -8 6162 5414 599 206 88 38 chr9 60910274 60910512 -56952115 - L1ME3A LINE L1 -3332 2814 2565 1940 207 72 11 chr9 60910532 60910976 -56951651 + L1MB8 LINE L1 5708 6178 0 2188 102 3 3 chr9 60911025 60911318 -56951309 - AluSg SINE Alu -17 293 1 223 324 103 21 chr9 60911533 60911678 -56950949 + MIR SINE MIR 31 187 -75 210 276 126 0 chr9 60911690 60911777 -56950850 - MIR SINE MIR 0 262 165 252 281 104 24 chr9 60912147 60912311 -56950316 - L1MC5 LINE L1 -44 7917 7741 308 250 0 36 chr9 60912321 60912405 -56950222 - MER20B DNA MER1_type -702 81 1 1038 147 13 93 chr9 60912934 60913159 -56949468 - MER46A DNA MER2_type -27 209 3 880 137 0 0 chr9 60913485 60913616 -56949011 - FRAM SINE Alu -7 169 39 875 196 303 42 chr9 60914242 60914268 -56948359 - HsTC2 DNA Tc2 1 1899 1881 531 176 231 0 chr9 60914268 60914376 -56948251 - FLAM_A SINE Alu 0 133 1 875 196 303 42 chr9 60914376 60914706 -56947921 - HsTC2 DNA Tc2 -17 1881 1274 704 234 238 11 chr9 60914707 60914989 -56947638 - HsTC2 DNA Tc2 -1536 362 17 2124 108 6 22 chr9 60915053 60915369 -56947258 - AluY SINE Alu 0 311 1 977 112 0 96 chr9 60915832 60916020 -56946607 - AluJb SINE Alu -13 299 130 344 296 6 40 chr9 60916022 60916198 -56946429 - L1M LINE L1 -935 5424 5255 2293 101 0 3 chr9 60916342 60916640 -56945987 + AluSx SINE Alu 1 297 -15 1355 260 61 5 chr9 60916745 60917221 -56945406 + MLT1H LTR MaLR 1 549 0 1264 281 61 28 chr9 60917221 60917447 -56945180 - L1M4 LINE L1 -1180 4966 4749 1767 176 7 13 chr9 60917447 60917754 -56944873 - AluJo SINE Alu -7 305 1 1264 281 61 28 chr9 60917754 60918131 -56944496 - L1M4 LINE L1 -1397 4749 4343 1135 165 71 41 chr9 60918154 60918421 -56944206 - L1MB7 LINE L1 -9 6175 5901 2010 126 20 3 chr9 60918426 60918719 -56943908 + AluSx SINE Alu 1 298 -14 216 250 0 0 chr9 60919631 60919675 -56942952 + MIR3 SINE MIR 113 156 -52 699 218 5 93 chr9 60919771 60920004 -56942623 - FRAM SINE Alu 0 216 1 1986 122 10 14 chr9 60920715 60921003 -56941624 + AluSx SINE Alu 3 289 -23 22 0 0 0 chr9 60921008 60921030 -56941597 + AT_rich Low_complexity Low_complexity 1 22 0 4201 217 50 5 chr9 60921030 60922063 -56940564 - L1M4 LINE L1 -1191 4955 3876 1115 276 55 55 chr9 60922801 60923312 -56939315 + LTR33 LTR ERVL 3 513 -8 181 250 0 42 chr9 60923552 60923600 -56939027 + L2 LINE L2 3268 3313 0 2423 15 0 7 chr9 60923839 60924109 -56938518 + AluYb8 SINE Alu 35 302 -16 299 274 0 60 chr9 60924671 60924788 -56937839 + G-rich Low_complexity Low_complexity 3 112 0 23 0 0 0 chr9 60924856 60924879 -56937748 + GC_rich Low_complexity Low_complexity 1 23 0 226 300 75 0 chr9 60925802 60925882 -56936745 + MIR SINE MIR 36 121 -87 1528 258 108 10 chr9 60925980 60926261 -56936366 - L2 LINE L2 -67 3246 2994 2326 102 0 3 chr9 60926261 60926574 -56936053 - AluSq SINE Alu -1 312 1 1528 258 108 10 chr9 60926574 60927107 -56935520 - L2 LINE L2 -319 2994 2098 288 253 0 95 chr9 60927107 60927202 -56935425 - L2 LINE L2 -1340 1974 1889 338 221 197 16 chr9 60927357 60927479 -56935148 + L2 LINE L2 3170 3313 0 252 0 0 0 chr9 60928396 60928424 -56934203 + (GA)n Simple_repeat Simple_repeat 1 28 0 231 286 14 0 chr9 60928876 60928946 -56933681 + CT-rich Low_complexity Low_complexity 2 72 0 226 317 17 0 chr9 60928948 60929008 -56933619 + L2 LINE L2 3243 3303 -10 2332 271 64 25 chr9 60929351 60929968 -56932659 + L2 LINE L2 1067 1658 -1656 309 109 0 0 chr9 60929968 60930014 -56932613 + (CA)n Simple_repeat Simple_repeat 2 47 0 2332 271 64 25 chr9 60930014 60930085 -56932542 + L2 LINE L2 1658 1725 -1589 1171 172 11 0 chr9 60930085 60930271 -56932356 + MER5A DNA MER1_type 2 189 0 2332 271 64 25 chr9 60930271 60930393 -56932234 + L2 LINE L2 1725 1910 -1404 673 220 13 1 chr9 60930393 60930540 -56932087 + L1MC3 LINE L1 6445 6627 -1181 816 268 10 10 chr9 60930540 60930745 -56931882 + L2 LINE L2 2255 2459 -855 729 175 43 81 chr9 60930745 60930956 -56931671 - MSTD LTR MaLR 0 396 205 2202 112 0 0 chr9 60931408 60931704 -56930923 - AluSx SINE Alu -4 308 13 1088 224 83 65 chr9 60931853 60932251 -56930376 - MER113 DNA MER1_type? -115 406 2 341 291 57 38 chr9 60932428 60932586 -56930041 - MIR3 SINE MIR -45 163 3 225 0 0 0 chr9 60932853 60932878 -56929749 + (A)n Simple_repeat Simple_repeat 1 25 0 2148 103 21 10 chr9 60933374 60933665 -56928962 + AluSc SINE Alu 1 294 -15 361 298 99 36 chr9 60934340 60934863 -56927764 + L2 LINE L2 2684 3265 -7 251 230 35 11 chr9 60935309 60935396 -56927231 + (TAA)n Simple_repeat Simple_repeat 2 90 0 541 292 84 6 chr9 60935406 60935584 -56927043 + MIR SINE MIR 60 251 -11 1227 190 46 28 chr9 60936335 60936619 -56926008 + AluJo SINE Alu 1 289 -23 781 204 45 0 chr9 60936619 60936776 -56925851 - MER3 DNA MER1_type -43 166 3 1438 98 67 44 chr9 60937459 60937684 -56924943 + MER30 DNA MER1_type 1 230 0 2499 67 0 0 chr9 60938060 60938360 -56924267 + AluY SINE Alu 3 302 -9 182 250 196 43 chr9 60938466 60938558 -56924069 + L2 LINE L2 3162 3267 -5 405 262 56 0 chr9 60938670 60938777 -56923850 - MIR SINE MIR -70 192 80 256 278 133 35 chr9 60941734 60941907 -56920720 + L1M4 LINE L1 2540 2729 -3417 219 36 0 0 chr9 60942344 60942372 -56920255 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1975 110 11 0 chr9 60942377 60942650 -56919977 - AluSx SINE Alu -36 276 1 2406 65 7 13 chr9 60942951 60943259 -56919368 - AluY SINE Alu -5 306 1 210 37 0 0 chr9 60943880 60943907 -56918720 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 578 236 50 7 chr9 60943911 60944051 -56918576 - FRAM SINE Alu -30 146 1 1778 94 0 8 chr9 60944099 60944333 -56918294 - AluSg SINE Alu -24 286 55 271 246 57 90 chr9 60944370 60944492 -56918135 - MLT1I LTR MaLR -47 362 245 284 356 91 68 chr9 60944713 60945098 -56917529 + L2 LINE L2 2875 3268 -4 1813 209 136 74 chr9 60945405 60946117 -56916510 - MER21B LTR ERV1 -107 756 1 1313 153 132 25 chr9 60946978 60947369 -56915258 - LTR54 LTR ERV1 -6 504 26 2487 48 0 22 chr9 60947369 60947681 -56914946 + AluY SINE Alu 1 305 -6 1313 153 132 25 chr9 60947681 60947708 -56914919 - LTR54 LTR ERV1 -484 26 3 4528 159 53 12 chr9 60948060 60949038 -56913589 + L1MB8 LINE L1 5137 6152 -26 260 290 43 93 chr9 60949649 60949811 -56912816 - L2 LINE L2 -1 3271 3118 623 263 4 112 chr9 60950185 60950293 -56912334 + MER58C DNA MER1_type 9 127 -2293 1944 151 3 0 chr9 60950293 60950578 -56912049 + AluSx SINE Alu 1 286 -26 623 263 4 112 chr9 60950578 60950617 -56912010 + MER58C DNA MER1_type 127 169 -2251 2118 107 7 17 chr9 60950617 60950916 -56911711 + AluSx SINE Alu 1 296 -16 623 263 4 112 chr9 60950916 60950999 -56911628 + MER58C DNA MER1_type 169 215 0 2169 138 65 11 chr9 60951923 60952278 -56910349 - THE1C LTR MaLR -1 374 1 408 47 16 16 chr9 60952278 60952342 -56910285 - THE1C-int LTR MaLR 0 1580 1517 1313 153 132 25 chr9 60952504 60952895 -56909732 - LTR54 LTR ERV1 -6 504 26 2487 48 0 22 chr9 60952895 60953207 -56909420 + AluY SINE Alu 1 305 -6 1313 153 132 25 chr9 60953207 60953234 -56909393 - LTR54 LTR ERV1 -484 26 3 2116 106 7 3 chr9 60953595 60953878 -56908749 + AluSg SINE Alu 1 284 -26 306 0 0 0 chr9 60953878 60953912 -56908715 + (TTAA)n Simple_repeat Simple_repeat 1 34 0 266 323 11 0 chr9 60954028 60954121 -56908506 - HERVL68 LTR ERVL -484 2553 2460 8434 249 42 34 chr9 60954309 60954525 -56908102 - HERVL68 LTR ERVL -768 4762 4549 2126 125 31 0 chr9 60954525 60954647 -56907980 + AluSx SINE Alu 2 119 -193 441 0 0 0 chr9 60954647 60954696 -56907931 + (CA)n Simple_repeat Simple_repeat 2 50 0 2126 125 31 0 chr9 60954696 60954862 -56907765 + AluSx SINE Alu 119 299 -13 8434 249 42 34 chr9 60954862 60955264 -56907363 - HERVL68 LTR ERVL -981 4549 4152 2522 54 0 16 chr9 60955264 60955578 -56907049 - AluY SINE Alu -1 310 2 8434 249 42 34 chr9 60955578 60957175 -56905452 - HERVL68 LTR ERVL -1378 4152 2528 5042 230 83 53 chr9 60957177 60958727 -56903900 - HERVL68 LTR ERVL -3918 1612 17 1446 171 40 75 chr9 60958742 60958801 -56903826 - LTR40b LTR ERVL -2 460 400 2282 118 0 0 chr9 60958801 60959105 -56903522 + AluSx SINE Alu 1 304 -8 1446 171 40 75 chr9 60959105 60959391 -56903236 - LTR40b LTR ERVL -62 400 127 1294 195 55 18 chr9 60959400 60959672 -56902955 - MER58B DNA MER1_type -37 304 23 23 0 0 0 chr9 60959730 60959753 -56902874 + AT_rich Low_complexity Low_complexity 1 23 0 2168 123 3 10 chr9 60959856 60960165 -56902462 - AluSx SINE Alu -5 307 1 2301 149 117 12 chr9 60960318 60960728 -56901899 - MSTB2 LTR MaLR 0 457 5 1259 107 17 0 chr9 60960909 60961132 -56901495 + AluSg/x SINE Alu 105 330 0 1897 149 0 34 chr9 60961138 60961459 -56901168 + AluJo SINE Alu 1 310 -2 1280 268 129 12 chr9 60961459 60962176 -56900451 + L1ME3A LINE L1 5163 5966 -204 690 202 70 20 chr9 60962587 60962609 -56900018 + L1MC4 LINE L1 6442 6461 -1324 3491 188 42 17 chr9 60962609 60963246 -56899381 - MER82 DNA MER2_type 0 653 1 690 202 70 20 chr9 60963246 60963420 -56899207 + L1MC4 LINE L1 6461 6618 -1167 558 44 15 0 chr9 60963437 60963505 -56899122 - L1PA16 LINE L1 -9 6157 6089 6106 17 0 1 chr9 60963598 60964248 -56898379 + SVA Other Other 734 1382 -4 192 40 0 0 chr9 60964266 60964291 -56898336 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 21 0 0 0 chr9 60964394 60964415 -56898212 + AT_rich Low_complexity Low_complexity 1 21 0 274 288 15 0 chr9 60964783 60964849 -56897778 + polypurine Low_complexity Low_complexity 1 67 0 4011 114 3 15 chr9 60964923 60965537 -56897090 + L1PA15 LINE L1 5557 6163 -2 551 155 0 155 chr9 60965579 60965727 -56896900 + FLAM_C SINE Alu 1 125 -18 285 210 0 0 chr9 60965738 60965800 -56896827 + GA-rich Low_complexity Low_complexity 5 66 0 2467 40 0 0 chr9 60966231 60966540 -56896087 - AluY SINE Alu 0 313 5 647 242 42 65 chr9 60967043 60967258 -56895369 + MER63A DNA MER1_type 1 210 0 21 36 0 0 chr9 60967513 60967541 -56895086 + AT_rich Low_complexity Low_complexity 1 28 0 323 229 86 0 chr9 60967894 60967999 -56894628 - L1ME2 LINE L1 -212 6188 6075 787 263 32 19 chr9 60968013 60968299 -56894328 - L1ME2 LINE L1 -410 6010 5692 1719 182 52 30 chr9 60968308 60968922 -56893705 - L1ME2 LINE L1 -3475 2907 2273 1068 129 0 0 chr9 60968928 60969083 -56893544 - AluSp/q SINE Alu -3 310 156 559 164 29 0 chr9 60969161 60969265 -56893362 - L1MB3 LINE L1 -17 6166 6060 3372 209 58 71 chr9 60969265 60970740 -56891887 - L1M4 LINE L1 -2614 3768 2314 5286 112 50 5 chr9 60970904 60972215 -56890412 - L1PA13 LINE L1 -18 6145 4801 1901 170 0 0 chr9 60972265 60972565 -56890062 - AluSx SINE Alu -12 300 1 1789 187 0 10 chr9 60972716 60973016 -56889611 - AluJb SINE Alu -15 297 1 303 292 54 31 chr9 60973080 60973210 -56889417 - L1M4 LINE L1 -1962 4184 4052 816 163 0 0 chr9 60973229 60973352 -56889275 - FLAM_C SINE Alu -20 123 1 1528 168 20 0 chr9 60973378 60973622 -56889005 - AluJb SINE Alu -63 249 1 2010 97 93 0 chr9 60973795 60974074 -56888553 - AluSx SINE Alu -7 305 1 234 0 0 0 chr9 60975219 60975245 -56887382 + (CATAA)n Simple_repeat Simple_repeat 3 28 0 343 201 104 37 chr9 60975251 60975385 -56887242 - L1ME4a LINE L1 -1 6120 5978 413 277 145 38 chr9 60975431 60975590 -56887037 + MER5B DNA MER1_type 1 176 -2 299 152 0 15 chr9 60976182 60976248 -56886379 + (CA)n Simple_repeat Simple_repeat 2 66 0 788 236 155 10 chr9 60976293 60976590 -56886037 + L1MC4 LINE L1 7122 7461 -581 1928 136 7 20 chr9 60977731 60978026 -56884601 + AluSx SINE Alu 2 292 -20 1981 142 3 0 chr9 60978178 60978467 -56884160 + AluSx SINE Alu 11 300 -12 1966 125 80 14 chr9 60979562 60979914 -56882713 - THE1C LTR MaLR 0 375 1 1588 158 44 22 chr9 60979914 60980187 -56882440 - AluJb SINE Alu -33 279 1 565 258 101 0 chr9 60980516 60980675 -56881952 - MIR SINE MIR -87 175 1 345 243 0 48 chr9 60981911 60982014 -56880613 - MER5B DNA MER1_type -4 174 77 1492 156 41 67 chr9 60985574 60985888 -56876739 - AluJb SINE Alu -4 308 3 476 213 11 0 chr9 60985903 60986028 -56876599 - FLAM_A SINE Alu 0 147 22 23 33 0 0 chr9 60986067 60986097 -56876530 + AT_rich Low_complexity Low_complexity 1 30 0 1231 189 98 15 chr9 60986099 60986364 -56876263 - AluJb SINE Alu -25 287 1 220 269 28 19 chr9 60987317 60987425 -56875202 + CT-rich Low_complexity Low_complexity 6 114 0 1587 144 79 7 chr9 60987438 60987716 -56874911 - AluJb SINE Alu -1 311 14 334 252 48 58 chr9 60987758 60987861 -56874766 + L2 LINE L2 3169 3270 -2 331 51 0 0 chr9 60988206 60988245 -56874382 + (TG)n Simple_repeat Simple_repeat 2 40 0 212 333 26 26 chr9 60990722 60990800 -56871827 + MIR SINE MIR 19 96 -112 347 234 113 0 chr9 60991392 60991516 -56871111 - MER103 DNA DNA -22 144 7 811 259 106 94 chr9 60991892 60992260 -56870367 - L2 LINE L2 -21 3292 2930 1239 183 98 56 chr9 60992260 60992687 -56869940 - LTR56 LTR ERV1 0 445 1 811 259 106 94 chr9 60992687 60992790 -56869837 - L2 LINE L2 -383 2930 2830 519 187 37 9 chr9 60992790 60992897 -56869730 - MER5A DNA MER1_type -34 155 46 811 259 106 94 chr9 60992897 60992997 -56869630 - L2 LINE L2 -483 2830 2594 2321 94 3 0 chr9 60993045 60993344 -56869283 + AluSx SINE Alu 1 300 -12 192 208 170 0 chr9 60993534 60993587 -56869040 + L2 LINE L2 3185 3246 -26 477 241 35 9 chr9 60993749 60993865 -56868762 - MLT1G1 LTR MaLR 0 595 477 622 297 37 53 chr9 60993872 60994205 -56868422 - MLT1G1 LTR MaLR -187 355 75 2284 165 73 20 chr9 60994465 60994957 -56867670 - L1MB5 LINE L1 0 6174 5657 1944 125 3 19 chr9 60994957 60995308 -56867319 - MER4A LTR ERV1 0 664 261 475 149 43 11 chr9 60995309 60995403 -56867224 - MER4A LTR ERV1 -567 97 1 2364 65 3 3 chr9 60995599 60995893 -56866734 - AluY SINE Alu -17 294 1 2100 104 37 0 chr9 60996175 60996352 -56866275 - AluSx SINE Alu -3 309 115 225 0 100 0 chr9 60996352 60996392 -56866235 + T-rich Low_complexity Low_complexity 2 45 0 2100 104 37 0 chr9 60996392 60996512 -56866115 - AluSx SINE Alu -197 115 1 259 271 188 0 chr9 60997609 60997705 -56864922 + MER94 DNA DNA 1 114 -20 2106 131 0 0 chr9 60998525 60998837 -56863790 - AluSx SINE Alu 0 312 1 1265 165 31 47 chr9 60999336 60999591 -56863036 + AluJo SINE Alu 42 292 -20 2459 74 6 0 chr9 61000261 61000572 -56862055 - AluSp SINE Alu 0 313 1 236 328 210 35 chr9 61001060 61001597 -56861030 - L2 LINE L2 -649 2665 2035 1129 170 132 29 chr9 61002258 61002542 -56860085 - MSTD LTR MaLR 0 396 51 1940 154 0 7 chr9 61002542 61002848 -56859779 - AluSx SINE Alu -6 306 3 1129 170 132 29 chr9 61002848 61002889 -56859738 - MSTD LTR MaLR -345 51 16 911 121 0 0 chr9 61003221 61003362 -56859265 + HERVL-A1 LTR ERVL 5514 5654 0 2765 84 41 8 chr9 61003362 61003753 -56858874 + MLT2A1 LTR ERVL 1 404 -40 428 66 0 97 chr9 61003799 61003995 -56858632 + (TA)n Simple_repeat Simple_repeat 2 178 0 * 446 90 83 0 chr9 61003959 61004115 -56858512 + (ATATG)n Simple_repeat Simple_repeat 2 170 0 * 665 102 0 54 chr9 61004079 61004265 -56858362 + (TA)n Simple_repeat Simple_repeat 2 177 0 334 266 0 21 chr9 61004266 61004360 -56858267 + L1MC4 LINE L1 6615 6706 -1336 331 275 22 0 chr9 61004286 61004377 -56858250 - L1MC4 LINE L1 -1336 6706 6614 * 305 244 16 63 chr9 61004331 61004458 -56858169 + L1MC4 LINE L1 6614 6734 -1308 * 477 211 135 0 chr9 61004462 61004566 -56858061 - FLAM_C SINE Alu -25 118 1 2013 145 3 7 chr9 61004611 61004915 -56857712 - AluJb SINE Alu -9 303 1 2104 106 34 0 chr9 61006299 61006591 -56856036 + AluSg SINE Alu 1 302 -8 2410 56 0 26 chr9 61006617 61006920 -56855707 + AluY SINE Alu 3 297 -14 1593 155 98 4 chr9 61007092 61007356 -56855271 - AluJo SINE Alu -23 289 1 743 187 0 8 chr9 61009017 61009151 -56853476 - FLAM_A SINE Alu 0 133 1 287 253 60 12 chr9 61009301 61009384 -56853243 + L2 LINE L2 3226 3312 -1 2050 128 7 16 chr9 61009483 61009787 -56852840 - AluSx SINE Alu -11 301 1 1025 153 34 34 chr9 61010007 61010216 -56852411 - MER6B DNA MER2_type -1 209 1 205 240 271 10 chr9 61010586 61010682 -56851945 + MER5A DNA MER1_type 46 166 -23 * 512 163 33 0 chr9 61010607 61010699 -56851928 - MER5A DNA MER1_type -77 112 18 2171 100 10 17 chr9 61010775 61010912 -56851715 + AluSx SINE Alu 1 137 -175 2229 103 3 3 chr9 61010912 61011212 -56851415 + AluSc SINE Alu 1 300 -9 2171 100 10 17 chr9 61011212 61011375 -56851252 + AluSx SINE Alu 137 299 -13 592 184 113 60 chr9 61013153 61013338 -56849289 + MER105 DNA DNA 5 199 -5 2101 133 0 3 chr9 61013982 61014284 -56848343 - AluSq SINE Alu -12 301 1 2585 239 180 37 chr9 61014666 61015649 -56846978 - HAL1 LINE L1 -34 2473 1632 25684 36 2 0 chr9 61015649 61019534 -56843093 - L1PA5 LINE L1 -18 6136 2244 2585 239 180 37 chr9 61019534 61019758 -56842869 - HAL1 LINE L1 -875 1632 1441 2192 103 3 0 chr9 61019758 61020048 -56842579 - AluSq SINE Alu -22 291 1 2585 239 180 37 chr9 61020048 61020255 -56842372 - HAL1 LINE L1 -1066 1441 855 362 304 52 15 chr9 61020367 61020502 -56842125 - HAL1 LINE L1 -1832 675 536 242 221 73 81 chr9 61020844 61020980 -56841647 - HAL1 LINE L1 -2288 219 85 3038 131 20 173 chr9 61020982 61021047 -56841580 - L1MB8 LINE L1 -5 6173 6100 1958 110 0 0 chr9 61021047 61021302 -56841325 + AluSg SINE Alu 1 255 -55 3038 131 20 173 chr9 61021302 61022098 -56840529 - L1MB8 LINE L1 -78 6100 5444 205 250 0 0 chr9 61022534 61022578 -56840049 + L3b LINE CR1 1187 1230 -353 352 258 98 38 chr9 61022675 61022807 -56839820 + L2 LINE L2 3133 3272 0 30 45 0 0 chr9 61022918 61022962 -56839665 + AT_rich Low_complexity Low_complexity 1 44 0 2276 80 28 0 chr9 61023905 61024191 -56838436 + AluY SINE Alu 1 294 -17 606 161 54 0 chr9 61024379 61024491 -56838136 + L1PA16 LINE L1 6049 6166 0 411 56 0 0 chr9 61024580 61024634 -56837993 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 2143 89 0 0 chr9 61024634 61024903 -56837724 - AluSq SINE Alu -29 284 16 713 85 94 0 chr9 61025154 61025260 -56837367 - FRAM SINE Alu -4 172 57 1645 184 3 33 chr9 61025373 61025672 -56836955 - AluJo SINE Alu -22 290 1 650 117 0 10 chr9 61025676 61025779 -56836848 - L1MA5A LINE L1 -5 6292 6191 1137 148 6 6 chr9 61026143 61026319 -56836308 - AluSg/x SINE Alu -15 297 122 1293 91 57 0 chr9 61026444 61026644 -56835983 + AluSg/x SINE Alu 95 304 0 954 171 156 30 chr9 61026723 61026992 -56835635 + MER5C DNA MER1_type 22 324 0 2107 87 0 11 chr9 61028093 61028369 -56834258 + AluY SINE Alu 20 292 -19 587 194 90 35 chr9 61028463 61028607 -56834020 - MIR SINE MIR -28 234 83 1974 169 0 0 chr9 61028958 61029260 -56833367 + AluJb SINE Alu 1 302 -10 789 303 153 39 chr9 61029492 61030262 -56832365 - L2 LINE L2 -729 2585 1728 246 160 0 0 chr9 61030404 61030454 -56832173 + (TTA)n Simple_repeat Simple_repeat 1 50 0 1989 220 34 10 chr9 61030595 61031090 -56831537 + L1MB4 LINE L1 4360 4866 -1280 1355 130 104 37 chr9 61031087 61031100 -56831527 - L1MA9 LINE L1 -30 6282 6271 * 1801 159 10 14 chr9 61031100 61031395 -56831232 + AluJo SINE Alu 1 294 -18 1355 130 104 37 chr9 61031395 61031650 -56830977 - L1MA9 LINE L1 -41 6271 5996 4916 146 24 41 chr9 61031675 61032271 -56830356 + L1MB4 LINE L1 4849 5454 -726 1946 36 9 0 chr9 61032271 61032496 -56830131 + AluY SINE Alu 83 309 -2 4916 146 24 41 chr9 61032496 61033203 -56829424 + L1MB4 LINE L1 5454 6131 -49 2527 69 3 0 chr9 61033203 61033508 -56829119 + AluSp SINE Alu 1 306 -7 4916 146 24 41 chr9 61033508 61033557 -56829070 + L1MB4 LINE L1 6131 6179 -1 245 246 16 0 chr9 61033569 61033630 -56828997 + MIR3 SINE MIR 140 201 -7 700 174 0 8 chr9 61033683 61033804 -56828823 + L1MC1 LINE L1 6205 6324 -9 231 136 91 0 chr9 61033873 61033917 -56828710 + MIR SINE MIR 214 261 -1 249 248 59 148 chr9 61033925 61034127 -56828500 - MIR SINE MIR -71 191 8 21 36 0 0 chr9 61035072 61035100 -56827527 + AT_rich Low_complexity Low_complexity 1 28 0 330 203 34 0 chr9 61035783 61035842 -56826785 + MER5C DNA MER1_type 1 61 -263 1901 159 3 0 chr9 61036387 61036677 -56825950 + AluSx SINE Alu 1 291 -21 307 311 66 0 chr9 61036702 61036808 -56825819 + MIR SINE MIR 61 173 -89 189 0 0 0 chr9 61037380 61037401 -56825226 + (TAA)n Simple_repeat Simple_repeat 2 22 0 22 35 0 0 chr9 61038333 61038362 -56824265 + AT_rich Low_complexity Low_complexity 1 29 0 349 211 125 98 chr9 61038721 61039138 -56823489 - L1MC5 LINE L1 -36 7925 7498 2264 99 0 0 chr9 61039407 61039699 -56822928 - AluSx SINE Alu -20 292 1 1043 157 13 0 chr9 61039942 61040101 -56822526 - AluJb SINE Alu -14 298 138 1160 137 0 0 chr9 61040917 61041078 -56821549 + AluJb SINE Alu 138 298 -14 2126 133 0 0 chr9 61042306 61042599 -56820028 + AluSg SINE Alu 1 293 -17 1561 179 72 14 chr9 61042741 61043020 -56819607 - AluJo SINE Alu -17 295 1 189 0 0 0 chr9 61043820 61043841 -56818786 + (A)n Simple_repeat Simple_repeat 1 21 0 1544 245 100 33 chr9 61047402 61047956 -56814671 + L1MEc LINE L1 2042 2639 -3576 1764 152 0 7 chr9 61047956 61048226 -56814401 + AluJb SINE Alu 1 268 -44 1544 245 100 33 chr9 61048226 61048476 -56814151 + L1MEc LINE L1 2639 2871 -3344 1741 249 106 52 chr9 61048605 61049294 -56813333 + L1MEc LINE L1 3116 3766 -2449 2617 170 65 15 chr9 61049294 61049829 -56812798 + MER68 LTR ERV1 1 562 0 1741 249 106 52 chr9 61049829 61049903 -56812724 + L1MEc LINE L1 3766 3835 -2380 2236 82 0 54 chr9 61049903 61050220 -56812407 + AluY SINE Alu 1 300 -11 1741 249 106 52 chr9 61050220 61050501 -56812126 + L1MEc LINE L1 3835 4218 -1997 239 146 18 18 chr9 61050508 61050563 -56812064 - L1MB7 LINE L1 -8 6176 6122 287 233 60 9 chr9 61050779 61050895 -56811732 + L1MEc LINE L1 4234 4355 -1860 2021 131 30 10 chr9 61050896 61051194 -56811433 + AluSx SINE Alu 3 306 -6 1080 153 0 21 chr9 61051194 61051383 -56811244 + AluSg/x SINE Alu 119 303 -9 1487 270 52 67 chr9 61051473 61051904 -56810723 + L1MEc LINE L1 4344 4780 -1451 1588 172 9 27 chr9 61051904 61052235 -56810392 + L1MB7 LINE L1 5860 6184 0 1487 270 52 67 chr9 61052235 61053390 -56809237 + L1MEc LINE L1 4780 5913 -318 298 257 71 57 chr9 61053589 61053729 -56808898 + L1ME3A LINE L1 6034 6175 -64 1893 144 3 17 chr9 61053789 61054088 -56808539 + AluJb SINE Alu 1 295 -17 2241 87 7 8 chr9 61055505 61055852 -56806775 + L1P5 LINE L1 5448 5792 -359 195 129 0 0 chr9 61055853 61055884 -56806743 + (TA)n Simple_repeat Simple_repeat 2 32 0 1950 139 0 7 chr9 61056086 61056374 -56806253 - AluJo SINE Alu -20 292 7 2141 178 79 33 chr9 61056380 61056712 -56805915 + Charlie1 DNA MER1_type 2186 2554 -207 2333 86 0 0 chr9 61056712 61057003 -56805624 + AluSc SINE Alu 1 291 -18 2141 178 79 33 chr9 61057003 61057216 -56805411 + Charlie1 DNA MER1_type 2554 2756 -5 190 305 34 0 chr9 61057398 61057457 -56805170 + L3 LINE CR1 1135 1195 -382 21 36 0 0 chr9 61057842 61057870 -56804757 + AT_rich Low_complexity Low_complexity 1 28 0 312 48 0 0 chr9 61058100 61058164 -56804463 + L1MA4 LINE L1 6249 6312 0 2217 102 7 7 chr9 61059496 61059791 -56802836 - AluSx SINE Alu -17 295 1 2538 53 3 0 chr9 61060238 61060538 -56802089 - AluY SINE Alu -10 301 1 630 180 51 67 chr9 61060804 61060982 -56801645 + MER5B DNA MER1_type 4 178 0 845 249 76 23 chr9 61061563 61061579 -56801048 + L1ME4a LINE L1 5680 5694 -427 2234 107 0 10 chr9 61061579 61061889 -56800738 + AluJb SINE Alu 1 307 -5 845 249 76 23 chr9 61061889 61062129 -56800498 + L1ME4a LINE L1 5694 5969 -152 2418 57 0 0 chr9 61062129 61062462 -56800165 + AluY SINE Alu 1 333 0 845 249 76 23 chr9 61062462 61062620 -56800007 + L1ME4a LINE L1 5969 6117 -4 2383 94 0 0 chr9 61063102 61063401 -56799226 + AluSg SINE Alu 1 299 -11 1079 119 0 38 chr9 61063879 61064039 -56798588 - AluSg/x SINE Alu -17 295 142 803 249 21 85 chr9 61064119 61064449 -56798178 - L2 LINE L2 0 3313 3005 1923 143 10 13 chr9 61064449 61064750 -56797877 + AluSx SINE Alu 1 300 -12 1404 187 46 0 chr9 61064909 61065171 -56797456 + AluJo SINE Alu 9 282 -30 384 59 0 0 chr9 61065174 61065225 -56797402 + (CATA)n Simple_repeat Simple_repeat 2 52 0 978 176 132 4 chr9 61065949 61066176 -56796451 + L1MB4 LINE L1 5664 5919 -261 1258 141 0 0 chr9 61066176 61066353 -56796274 - AluJb SINE Alu -2 310 134 2065 129 10 0 chr9 61066353 61066648 -56795979 - AluSc SINE Alu -11 298 1 1940 119 53 7 chr9 61066665 61066950 -56795677 - AluSx SINE Alu -14 298 1 927 206 83 32 chr9 61066950 61067202 -56795425 + L1MB4 LINE L1 5915 6179 -1 1768 176 0 28 chr9 61067993 61068311 -56794316 + AluJb SINE Alu 1 309 -3 226 280 67 13 chr9 61068374 61068449 -56794178 + L2 LINE L2 3234 3312 -1 2298 96 7 0 chr9 61068564 61068856 -56793771 - AluSx SINE Alu -18 294 1 24 32 0 0 chr9 61069038 61069069 -56793558 + AT_rich Low_complexity Low_complexity 1 31 0 27 0 0 0 chr9 61069592 61069619 -56793008 + AT_rich Low_complexity Low_complexity 1 27 0 221 176 0 78 chr9 61069872 61069923 -56792704 + MIR3 SINE MIR 157 203 -5 180 250 62 0 chr9 61070305 61070353 -56792274 - L2 LINE L2 -1 3312 3262 266 206 96 0 chr9 61070926 61070999 -56791628 + L1MC5 LINE L1 7705 7784 -177 279 269 0 0 chr9 61071007 61071074 -56791553 + L1MC5 LINE L1 7825 7891 -70 2069 95 53 3 chr9 61071168 61071451 -56791176 - AluSq SINE Alu -16 297 1 2491 67 0 0 chr9 61071782 61072081 -56790546 - AluY SINE Alu -11 300 2 1666 32 0 0 chr9 61072111 61072301 -56790326 - L1PA5 LINE L1 -9 6145 5956 3147 183 65 8 chr9 61072301 61073048 -56789579 + L1M4 LINE L1 4340 5132 -1014 514 103 23 0 chr9 61073052 61073139 -56789488 + L1MA5 LINE L1 6210 6298 -2 792 210 16 111 chr9 61073190 61073433 -56789194 + AluJo SINE Alu 85 304 -8 200 33 0 33 chr9 61073459 61073489 -56789138 + (GGGA)n Simple_repeat Simple_repeat 4 32 0 1031 166 90 18 chr9 61073496 61073776 -56788851 + L1M4 LINE L1 5148 5442 -742 860 153 0 15 chr9 61073776 61073913 -56788714 + AluSq/x SINE Alu 1 135 -177 2110 102 0 0 chr9 61073913 61074188 -56788439 + AluSx SINE Alu 1 275 -37 207 0 0 0 chr9 61074192 61074215 -56788412 + (CAAA)n Simple_repeat Simple_repeat 1 23 0 1360 163 14 53 chr9 61074216 61074499 -56788128 + L1M4 LINE L1 5430 5701 -483 1499 115 0 0 chr9 61074732 61074932 -56787695 + AluJb SINE Alu 1 200 -112 1987 108 45 3 chr9 61075069 61075356 -56787271 + AluJb SINE Alu 1 299 -13 25 51 0 0 chr9 61076379 61076418 -56786209 + GC_rich Low_complexity Low_complexity 1 39 0 1540 189 41 26 chr9 61076892 61077235 -56785392 - L1MB5 LINE L1 0 6174 5827 2473 70 0 13 chr9 61077235 61077550 -56785077 - AluY SINE Alu 0 311 1 1103 103 0 0 chr9 61077554 61077700 -56784927 - AluSp SINE Alu -31 282 137 882 116 125 83 chr9 61077710 61077857 -56784770 - L1MB5 LINE L1 -355 5819 5659 2318 80 0 17 chr9 61077857 61078156 -56784471 - AluSx SINE Alu -18 294 1 882 116 125 83 chr9 61078156 61078224 -56784403 - L1MB5 LINE L1 -515 5659 5595 34 65 0 0 chr9 61078343 61078405 -56784222 + AT_rich Low_complexity Low_complexity 1 62 0 1721 190 3 7 chr9 61078409 61078704 -56783923 + AluJb SINE Alu 3 296 -16 2249 92 0 0 chr9 61080169 61080452 -56782175 + AluSg SINE Alu 9 291 -19 2442 88 3 0 chr9 61080776 61081084 -56781543 + AluSx SINE Alu 1 309 -3 1343 94 0 0 chr9 61081084 61081302 -56781325 + AluSc SINE Alu 118 309 0 653 195 6 75 chr9 61081302 61081370 -56781257 + MER112 DNA MER1_type 98 169 -91 951 123 0 0 chr9 61081370 61081500 -56781127 - FLAM_C SINE Alu -3 130 1 653 195 6 75 chr9 61081500 61081514 -56781113 + MER112 DNA MER1_type 169 182 -78 1924 155 7 3 chr9 61081514 61081811 -56780816 - AluJb SINE Alu -14 298 1 653 195 6 75 chr9 61081811 61081901 -56780726 + MER112 DNA MER1_type 182 259 -1 1675 244 95 28 chr9 61081974 61082032 -56780595 - MLT1E LTR MaLR -4 589 536 2304 92 7 0 chr9 61082032 61082327 -56780300 + AluSg SINE Alu 1 297 -13 1675 244 95 28 chr9 61082327 61082804 -56779823 - MLT1E LTR MaLR -57 536 18 346 282 149 16 chr9 61082808 61083056 -56779571 + L2 LINE L2 2469 2749 -565 2181 98 0 0 chr9 61083395 61083672 -56778955 - AluSg SINE Alu -29 281 5 1491 185 43 4 chr9 61083856 61083969 -56778658 + AluJo SINE Alu 6 113 -199 981 61 14 14 chr9 61083969 61084116 -56778511 + (GAAA)n Simple_repeat Simple_repeat 2 148 0 1491 185 43 4 chr9 61084116 61084278 -56778349 + AluJo SINE Alu 113 292 -20 1516 166 3 86 chr9 61084386 61084565 -56778062 - AluJo SINE Alu -24 288 145 2113 117 40 0 chr9 61084565 61084864 -56777763 - AluSq SINE Alu -2 311 1 1516 166 3 86 chr9 61084864 61084998 -56777629 - AluJo SINE Alu -167 145 1 2374 60 0 4 chr9 61085021 61085329 -56777298 - AluY SINE Alu 0 307 1 354 200 0 4 chr9 61085609 61085692 -56776935 - L1MC5 LINE L1 -371 7671 7499 2694 149 25 39 chr9 61085702 61085781 -56776846 - L1MB2 LINE L1 -7 6164 6085 2132 102 11 3 chr9 61085781 61086065 -56776562 + AluSx SINE Alu 1 286 -26 294 29 0 0 chr9 61086065 61086100 -56776527 + (CATA)n Simple_repeat Simple_repeat 2 36 0 2694 149 25 39 chr9 61086100 61086536 -56776091 - L1MB2 LINE L1 -84 6087 5655 912 162 26 0 chr9 61086545 61086699 -56775928 + MLT1A2 LTR MaLR 1 158 -216 1652 184 0 3 chr9 61086708 61087161 -56775466 + AluJo SINE Alu 1 452 0 715 221 109 50 chr9 61087165 61087463 -56775164 - L1MC5 LINE L1 -516 7498 7218 2288 110 0 10 chr9 61087463 61087771 -56774856 + AluSx SINE Alu 1 305 -7 715 221 109 50 chr9 61087771 61088050 -56774577 - L1MC5 LINE L1 -796 7218 6957 1761 156 62 0 chr9 61088233 61088509 -56774118 + AluJb SINE Alu 1 293 -19 2498 61 3 0 chr9 61088516 61088809 -56773818 - AluY SINE Alu -17 294 1 697 163 0 64 chr9 61089018 61089159 -56773468 - AluSg/x SINE Alu -1 309 178 526 143 0 0 chr9 61089155 61089239 -56773388 + AluSp/q SINE Alu 228 311 -2 * 261 266 55 18 chr9 61089294 61089403 -56773224 + MLT1K LTR MaLR 466 578 -10 285 231 0 77 chr9 61089547 61089625 -56773002 + Tigger3(Golem) DNA MER2_type 1 72 -2957 1312 206 28 43 chr9 61089638 61089684 -56772943 + MER92C LTR ERV1 233 278 -276 825 154 0 22 chr9 61089684 61089820 -56772807 - FLAM_C SINE Alu 0 133 1 1312 206 28 43 chr9 61089820 61090098 -56772529 + MER92C LTR ERV1 278 552 -2 406 156 78 44 chr9 61090402 61090492 -56772135 + MER90 LTR ERV1 1 93 -482 315 269 74 7 chr9 61090488 61090621 -56772006 + MLT1J LTR MaLR 71 212 -234 * 962 211 53 63 chr9 61090639 61090942 -56771685 + MER90 LTR ERV1 147 446 -168 425 175 0 52 chr9 61091409 61091506 -56771121 + L1MC5 LINE L1 7147 7238 -723 347 253 126 52 chr9 61091565 61091606 -56771021 + MLT1J LTR MaLR 2 39 -472 889 177 13 6 chr9 61091606 61091764 -56770863 - FRAM SINE Alu -6 160 2 347 253 126 52 chr9 61091764 61091896 -56770731 + MLT1J LTR MaLR 39 188 -323 627 183 0 63 chr9 61091935 61092077 -56770550 - FLAM_A SINE Alu 0 133 1 1574 166 60 3 chr9 61092207 61092491 -56770136 + AluJo SINE Alu 13 312 0 199 268 21 10 chr9 61092497 61092594 -56770033 + GA-rich Low_complexity Low_complexity 1 98 0 303 277 36 27 chr9 61092654 61092766 -56769861 - MLT1L LTR MaLR -7 608 496 604 289 31 18 chr9 61092846 61093074 -56769553 - MLT1L LTR MaLR -292 323 93 616 180 102 0 chr9 61093103 61093231 -56769396 + MER91B DNA MER1_type 14 154 -36 21 71 0 0 chr9 61093381 61093423 -56769204 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr9 61093735 61093756 -56768871 + AT_rich Low_complexity Low_complexity 1 21 0 1753 157 7 23 chr9 61093872 61094171 -56768456 - AluJo SINE Alu -18 294 1 2157 112 7 0 chr9 61094180 61094494 -56768133 - AluSq SINE Alu 0 316 1 376 306 45 9 chr9 61095046 61095157 -56767470 + L2 LINE L2 3158 3272 0 1563 140 3 143 chr9 61095245 61095588 -56767039 + AluJb SINE Alu 1 295 -17 585 265 42 0 chr9 61095745 61095911 -56766716 - Charlie8 DNA MER1_type -2240 177 5 649 231 137 19 chr9 61096152 61096364 -56766263 + MLT1F1 LTR MaLR 323 559 -8 604 229 28 0 chr9 61096370 61096514 -56766113 + MLT1C LTR MaLR 6 153 -314 1258 151 0 41 chr9 61096523 61096741 -56765886 + AluJo SINE Alu 102 310 -2 2238 108 24 0 chr9 61096753 61097049 -56765578 + AluSq SINE Alu 1 303 -10 1098 211 21 13 chr9 61097082 61097319 -56765308 + MLT1C LTR MaLR 226 464 -3 2233 106 26 0 chr9 61098182 61098484 -56764143 + AluSg SINE Alu 1 310 0 2429 69 3 0 chr9 61098863 61099154 -56763473 + AluY SINE Alu 1 292 -19 757 169 77 0 chr9 61099163 61099293 -56763334 + FLAM_C SINE Alu 2 141 -2 1955 145 10 0 chr9 61100244 61100541 -56762086 + AluJb SINE Alu 1 300 -12 2347 66 3 7 chr9 61100736 61101024 -56761603 - AluY SINE Alu -24 287 1 2154 119 7 7 chr9 61101147 61101450 -56761177 + AluSg SINE Alu 1 303 -7 666 215 16 0 chr9 61101727 61101848 -56760779 + AluJb SINE Alu 1 123 -189 1114 121 7 0 chr9 61101872 61102021 -56760606 - AluSq/x SINE Alu -162 150 1 989 157 26 0 chr9 61102042 61102195 -56760432 + AluJb SINE Alu 132 288 -24 21 36 0 0 chr9 61102573 61102601 -56760026 + AT_rich Low_complexity Low_complexity 1 28 0 9406 51 4 156 chr9 61102635 61104234 -56758393 + SVA Other Other 30 1385 -1 2387 95 3 9 chr9 61104484 61104799 -56757828 + AluSp SINE Alu 1 313 0 31 58 0 0 chr9 61105057 61105109 -56757518 + AT_rich Low_complexity Low_complexity 1 52 0 2362 101 0 0 chr9 61105164 61105470 -56757157 - AluSg SINE Alu -4 306 1 1816 159 6 22 chr9 61105706 61106021 -56756606 - AluJb SINE Alu 0 312 3 1932 119 58 14 chr9 61106108 61106402 -56756225 + AluSq SINE Alu 1 307 -6 2299 81 10 10 chr9 61106406 61106713 -56755914 + AluSx SINE Alu 6 312 0 224 347 20 10 chr9 61106888 61106986 -56755641 + MER5A DNA MER1_type 91 189 0 1831 159 23 0 chr9 61107105 61107406 -56755221 - AluJo SINE Alu -4 308 1 2080 106 24 14 chr9 61107502 61107636 -56754991 + AluSg1 SINE Alu 1 132 -177 2484 59 3 3 chr9 61107636 61107941 -56754686 + AluY SINE Alu 1 305 -6 2080 106 24 14 chr9 61107941 61108099 -56754528 + AluSg1 SINE Alu 132 296 -13 1881 115 4 0 chr9 61108109 61108353 -56754274 + AluSq SINE Alu 1 245 -68 233 121 0 0 chr9 61108427 61108460 -56754167 + MSTA LTR MaLR 396 428 0 1555 117 0 0 chr9 61108466 61108671 -56753956 - AluSq SINE Alu -9 304 100 452 118 15 0 chr9 61108772 61108840 -56753787 - AluS SINE Alu -236 74 6 806 127 0 0 chr9 61108847 61108965 -56753662 - AluSg/x SINE Alu -2 308 191 2123 118 3 7 chr9 61109104 61109393 -56753234 - AluSx SINE Alu -24 288 1 1461 108 0 15 chr9 61109596 61109799 -56752828 + AluSg/x SINE Alu 99 298 -12 2426 93 0 0 chr9 61109799 61110109 -56752518 + AluSg SINE Alu 1 310 0 2273 104 0 3 chr9 61110121 61110429 -56752198 + AluSq SINE Alu 7 313 0 183 114 0 0 chr9 61112339 61112374 -56750253 + (TTTTTG)n Simple_repeat Simple_repeat 4 38 0 1889 117 0 4 chr9 61113009 61113266 -56749361 - AluSx SINE Alu -19 293 38 2359 93 0 0 chr9 61113272 61113563 -56749064 - AluSx SINE Alu -21 291 1 1542 179 0 11 chr9 61113890 61114169 -56748458 + AluJb SINE Alu 1 276 -36 1559 129 71 48 chr9 61114369 61114663 -56747964 + AluJb SINE Alu 1 301 -11 1477 75 158 30 chr9 61115020 61115285 -56747342 - AluY SINE Alu -1 300 2 1816 55 0 21 chr9 61115290 61115525 -56747102 - AluY SINE Alu -13 298 69 1750 158 50 0 chr9 61115573 61115851 -56746776 - AluJo SINE Alu -15 297 6 1789 151 0 15 chr9 61116119 61116391 -56746236 + AluJb SINE Alu 1 268 -44 239 262 113 42 chr9 61116589 61116757 -56745870 + L2 LINE L2 1909 2088 -1226 22 0 0 0 chr9 61116849 61116871 -56745756 + AT_rich Low_complexity Low_complexity 1 22 0 2325 96 0 19 chr9 61116952 61117264 -56745363 - AluSg SINE Alu -4 306 1 2017 143 0 10 chr9 61117777 61118091 -56744536 + AluJb SINE Alu 1 311 -1 25 0 0 0 chr9 61118351 61118376 -56744251 + AT_rich Low_complexity Low_complexity 1 25 0 2223 97 7 3 chr9 61118376 61118675 -56743952 + AluY SINE Alu 1 300 -11 659 160 61 0 chr9 61118675 61118806 -56743821 - L1MA8 LINE L1 -7 6284 6146 1605 122 18 107 chr9 61118960 61119052 -56743575 + AluSx SINE Alu 1 100 -212 2195 92 55 0 chr9 61119052 61119345 -56743282 + AluSq SINE Alu 2 310 -3 1605 122 18 107 chr9 61119345 61119415 -56743212 + AluSx SINE Alu 100 175 -137 2499 61 0 6 chr9 61119415 61119726 -56742901 + AluY SINE Alu 1 309 -2 1605 122 18 107 chr9 61119726 61119898 -56742729 + AluSx SINE Alu 175 306 -6 243 322 23 35 chr9 61119913 61120000 -56742627 - LTR67 LTR ERVL -338 219 134 717 244 124 5 chr9 61120333 61120542 -56742085 - LTR16A1 LTR ERVL 0 457 224 1158 95 0 0 chr9 61120729 61120876 -56741751 - AluSq SINE Alu -19 294 148 376 147 0 15 chr9 61121375 61121443 -56741184 + AluS SINE Alu 225 291 -9 1561 135 77 4 chr9 61121488 61121748 -56740879 - AluJb SINE Alu -28 284 6 645 186 0 0 chr9 61122836 61122962 -56739665 + AluJb SINE Alu 183 308 0 710 219 0 0 chr9 61126191 61126305 -56736322 - FLAM_A SINE Alu -19 114 1 23 0 0 0 chr9 61128185 61128208 -56734419 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr9 61129257 61129285 -56733342 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr9 61129535 61129559 -56733068 + AT_rich Low_complexity Low_complexity 1 24 0 180 0 0 0 chr9 61133531 61133551 -56729076 + (A)n Simple_repeat Simple_repeat 1 20 0 192 326 0 23 chr9 61136577 61136663 -56725964 - L2 LINE L2 -42 3271 3188 2456 63 0 16 chr9 61137581 61137896 -56724731 + AluY SINE Alu 1 310 -1 279 302 151 25 chr9 61138321 61138480 -56724147 - MIR SINE MIR -4 258 80 317 268 96 54 chr9 61139019 61139268 -56723359 - L1ME4a LINE L1 -190 5931 5665 504 234 7 0 chr9 61139268 61139405 -56723222 - L1MA4 LINE L1 0 6300 6163 317 268 96 54 chr9 61139405 61139469 -56723158 - L1ME4a LINE L1 -456 5665 5605 2128 87 0 7 chr9 61139472 61139747 -56722880 - AluSp SINE Alu -16 297 25 2240 106 3 7 chr9 61139761 61140062 -56722565 - AluSp SINE Alu -13 300 1 2262 60 18 3 chr9 61140926 61141211 -56721416 + AluY SINE Alu 1 289 -22 25 0 0 0 chr9 61141252 61141277 -56721350 + AT_rich Low_complexity Low_complexity 1 25 0 182 333 107 23 chr9 61141662 61141839 -56720788 + MIR SINE MIR 19 210 -52 216 135 0 0 chr9 61142246 61142283 -56720344 + (TTCCC)n Simple_repeat Simple_repeat 1 37 0 1919 115 41 0 chr9 61142283 61142552 -56720075 - AluSx SINE Alu -32 280 1 2471 177 157 69 chr9 61142578 61143093 -56719534 - L1ME1 LINE L1 -1 6165 5697 1744 148 38 31 chr9 61143093 61143383 -56719244 - AluJb SINE Alu -20 292 1 2471 177 157 69 chr9 61143383 61143501 -56719126 - L1ME1 LINE L1 -469 5697 5591 1791 189 0 0 chr9 61143501 61143803 -56718824 - AluJo SINE Alu -10 302 1 2471 177 157 69 chr9 61143803 61144035 -56718592 - L1ME1 LINE L1 -575 5591 5339 1741 179 3 16 chr9 61144042 61144355 -56718272 - AluJb SINE Alu -1 311 3 5562 157 41 6 chr9 61144390 61144869 -56717758 + L1MA4 LINE L1 4996 5456 -844 183 42 0 0 chr9 61144869 61144893 -56717734 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 5562 157 41 6 chr9 61144893 61145435 -56717192 + L1MA4 LINE L1 5456 6071 -229 2194 86 17 3 chr9 61145435 61145726 -56716901 + AluSg SINE Alu 1 295 -15 5562 157 41 6 chr9 61145726 61145959 -56716668 + L1MA4 LINE L1 6071 6294 -6 2280 110 3 0 chr9 61145996 61146305 -56716322 - AluSp SINE Alu -1 312 3 355 221 71 58 chr9 61146309 61146463 -56716164 - L1ME1 LINE L1 -838 5308 5153 819 195 18 41 chr9 61146501 61146670 -56715957 - AluJb SINE Alu -2 310 146 883 199 124 0 chr9 61146809 61146995 -56715632 - MER3 DNA MER1_type 0 209 1 1975 133 3 13 chr9 61147324 61147632 -56714995 + AluSx SINE Alu 1 305 -7 2251 88 7 26 chr9 61147632 61147937 -56714690 + AluSq SINE Alu 1 299 -14 753 210 18 42 chr9 61147981 61148148 -56714479 + FRAM SINE Alu 1 163 -13 2248 100 7 0 chr9 61148150 61148451 -56714176 + AluY SINE Alu 1 303 -8 2032 138 0 0 chr9 61148920 61149210 -56713417 - AluSx SINE Alu -22 290 1 189 0 0 0 chr9 61150649 61150670 -56711957 + (TG)n Simple_repeat Simple_repeat 2 22 0 228 174 0 0 chr9 61150670 61150716 -56711911 + LTR66 LTR ERVL 394 439 -171 230 333 0 0 chr9 61150716 61150800 -56711827 - L1MC4 LINE L1 -1345 6697 6614 1342 239 92 82 chr9 61151024 61151038 -56711589 - L1MC4a LINE L1 -1675 6133 6121 1931 96 44 4 chr9 61151038 61151333 -56711294 + AluSx SINE Alu 1 306 0 1342 239 92 82 chr9 61151333 61151998 -56710629 - L1MC4a LINE L1 -1687 6121 5446 340 175 0 0 chr9 61152008 61152065 -56710562 + AluSq SINE Alu 131 187 -116 319 51 0 0 chr9 61152345 61152384 -56710243 + MER57B LTR ERV1 330 368 -66 333 0 0 0 chr9 61152384 61152421 -56710206 + (A)n Simple_repeat Simple_repeat 1 37 0 2232 120 3 0 chr9 61152624 61152932 -56709695 + AluSx SINE Alu 1 309 -3 550 232 36 7 chr9 61153309 61153447 -56709180 + MIR SINE MIR 35 176 -86 422 212 10 10 chr9 61153874 61153973 -56708654 + MLT1I LTR MaLR 308 406 -3 1490 165 0 8 chr9 61154113 61154350 -56708277 + AluJb SINE Alu 1 235 -77 564 176 8 34 chr9 61154350 61154462 -56708165 + AluJb SINE Alu 200 310 -2 242 237 17 0 chr9 61154543 61154602 -56708025 - Charlie2 DNA MER1_type 0 2862 2803 1040 50 0 0 chr9 61154628 61154748 -56707879 + AluSq/x SINE Alu 1 120 -193 1443 73 6 0 chr9 61155093 61155271 -56707356 - AluYa5 SINE Alu -132 179 1 482 282 52 39 chr9 61155286 61155557 -56707070 + L1ME4a LINE L1 5687 5914 -207 1702 189 59 19 chr9 61155682 61156053 -56706574 + L1ME1 LINE L1 5520 5905 -261 778 138 35 0 chr9 61156054 61156170 -56706457 - Tigger1 DNA MER2_type 0 2418 2299 2076 114 0 20 chr9 61156170 61156469 -56706158 + AluJb SINE Alu 1 293 -19 4466 129 30 42 chr9 61156583 61156661 -56705966 + MER11C LTR ERVK 290 367 -704 2606 64 0 0 chr9 61156661 61156972 -56705655 + AluY SINE Alu 1 311 0 4466 129 30 42 chr9 61156972 61157684 -56704943 + MER11C LTR ERVK 367 1071 0 12938 101 13 27 chr9 61157684 61159689 -56702938 - L1P3 LINE L1 -4439 2022 8 8482 189 62 34 chr9 61159699 61161454 -56701173 - L1M2 LINE L1 -5045 1804 1 27 29 0 0 chr9 61161603 61161637 -56700990 + AT_rich Low_complexity Low_complexity 1 34 0 25 65 0 0 chr9 61161777 61161823 -56700804 + AT_rich Low_complexity Low_complexity 1 46 0 421 346 46 54 chr9 61162027 61162307 -56700320 + L2 LINE L2 2807 3084 -188 400 290 32 16 chr9 61162369 61162493 -56700134 - L1MC5 LINE L1 -37 7924 7799 24 0 0 0 chr9 61162529 61162553 -56700074 + AT_rich Low_complexity Low_complexity 1 24 0 353 352 28 0 chr9 61162563 61162705 -56699922 + L2 LINE L2 3168 3313 0 1045 294 164 25 chr9 61162716 61163270 -56699357 + L3 LINE CR1 386 1016 -561 1414 26 0 0 chr9 61163280 61163498 -56699129 + L1PA4 LINE L1 5997 6214 0 256 235 15 0 chr9 61163844 61163912 -56698715 + Charlie8 DNA MER1_type 1349 1417 -1000 2167 71 11 0 chr9 61164096 61164364 -56698263 - AluY SINE Alu -40 271 1 358 253 32 0 chr9 61164366 61164461 -56698166 - L1ME LINE L1 -456 5665 5568 447 206 257 0 chr9 61164480 61164616 -56698011 + MIR SINE MIR 75 245 -17 2221 98 0 14 chr9 61165143 61165440 -56697187 - AluY SINE Alu -18 293 1 1007 75 0 0 chr9 61166212 61166332 -56696295 - AluSq/x SINE Alu -192 120 1 660 287 6 0 chr9 61166332 61166513 -56696114 - L1MC5 LINE L1 -1161 6800 6619 810 203 0 0 chr9 61166570 61166770 -56695857 - AluJb SINE Alu 0 334 135 4567 113 6 3 chr9 61166770 61167434 -56695193 - L1MA2 LINE L1 -46 6258 5593 7912 135 47 26 chr9 61167455 61170064 -56692563 - L1MA1 LINE L1 -6 6296 3621 2289 105 0 0 chr9 61170064 61170359 -56692268 - AluSg SINE Alu -15 295 1 7912 135 47 26 chr9 61170359 61170495 -56692132 - L1MA1 LINE L1 -2681 3621 3489 * 22488 86 17 10 chr9 61170484 61171164 -56691463 - L1PA7 LINE L1 -2 6152 5478 2421 81 0 10 chr9 61171164 61171473 -56691154 - AluY SINE Alu -5 306 1 22488 86 17 10 chr9 61171473 61175070 -56687557 - L1PA7 LINE L1 -676 5478 1841 715 170 0 0 chr9 61175174 61175315 -56687312 + (CCCTG)n Simple_repeat Simple_repeat 4 144 0 1249 42 0 0 chr9 61175330 61175472 -56687155 - AluY SINE Alu -169 142 1 2807 137 17 8 chr9 61175472 61175991 -56686636 - L1MA2 LINE L1 -1130 5016 4493 906 136 0 0 chr9 61175992 61176124 -56686503 - AluSg/x SINE Alu -9 303 172 396 226 100 79 chr9 61176127 61176254 -56686373 - HAL1 LINE L1 -1186 1321 1198 1813 175 7 3 chr9 61176254 61176546 -56686081 - AluJb SINE Alu -19 293 1 396 226 100 79 chr9 61176546 61176758 -56685869 - HAL1 LINE L1 -1309 1198 975 2254 85 13 19 chr9 61176768 61177075 -56685552 - AluSx SINE Alu -7 305 1 1353 222 51 34 chr9 61177185 61177536 -56685091 - MSTD LTR MaLR 0 396 40 1685 129 85 34 chr9 61177560 61177855 -56684772 - AluSg SINE Alu 0 310 1 261 122 102 0 chr9 61177856 61177905 -56684722 - MSTD LTR MaLR -374 54 1 591 167 0 0 chr9 61178058 61178160 -56684467 - FRAM SINE Alu -40 136 35 1864 141 3 14 chr9 61178174 61178464 -56684163 - AluSx SINE Alu -7 305 19 329 258 53 79 chr9 61178510 61178700 -56683927 - HAL1 LINE L1 -2319 188 4 239 305 116 61 chr9 61178705 61178869 -56683758 - MIR SINE MIR -70 192 20 2329 92 0 0 chr9 61179278 61179573 -56683054 - AluY SINE Alu -16 295 1 289 370 28 0 chr9 61179827 61179935 -56682692 + MIR3 SINE MIR 93 203 -5 901 190 4 85 chr9 61180051 61180145 -56682482 - L1MB7 LINE L1 -3 6181 6081 2296 91 3 0 chr9 61180145 61180441 -56682186 - AluSp SINE Alu -16 297 1 901 190 4 85 chr9 61180441 61180604 -56682023 - L1MB7 LINE L1 -103 6081 5945 527 143 0 0 chr9 61180628 61180719 -56681908 - AluJ/FRAM SINE Alu -2 310 220 2276 157 30 68 chr9 61180719 61181162 -56681465 - L1MB7 LINE L1 -237 5941 5519 2044 140 0 0 chr9 61181162 61181485 -56681142 - AluSq SINE Alu 0 323 1 2276 157 30 68 chr9 61181485 61181568 -56681059 - L1MB7 LINE L1 -659 5519 5434 582 261 0 33 chr9 61181596 61181776 -56680851 - L1ME3 LINE L1 -88 6074 5901 707 151 0 7 chr9 61181777 61181907 -56680720 + L1M4 LINE L1 5680 5801 -320 7602 115 19 97 chr9 61181911 61182240 -56680387 + Tigger1 DNA MER2_type 860 1213 -1205 1566 157 53 4 chr9 61182240 61182502 -56680125 + AluJb SINE Alu 14 288 -24 7602 115 19 97 chr9 61182502 61182871 -56679756 + Tigger1 DNA MER2_type 1213 1609 -809 1140 124 0 0 chr9 61182871 61183049 -56679578 + (TTC)n Simple_repeat Simple_repeat 1 178 0 7602 115 19 97 chr9 61183049 61183067 -56679560 + Tigger1 DNA MER2_type 1609 1627 -791 2095 150 13 0 chr9 61183067 61183374 -56679253 - AluSx SINE Alu -1 311 1 7602 115 19 97 chr9 61183374 61184056 -56678571 + Tigger1 DNA MER2_type 1627 2134 -284 1768 165 0 32 chr9 61184056 61184372 -56678255 + AluJo SINE Alu 1 306 -6 7602 115 19 97 chr9 61184372 61184492 -56678135 + Tigger1 DNA MER2_type 2134 2262 -156 422 145 0 0 chr9 61184593 61184655 -56677972 - AluJ/FLAM SINE Alu -250 62 1 449 203 0 30 chr9 61184655 61184788 -56677839 - L1MB7 LINE L1 -1040 5106 4978 1607 238 9 2 chr9 61184791 61185223 -56677404 - L1MB7 LINE L1 -1262 4884 4450 2283 184 42 7 chr9 61185299 61185755 -56676872 + MER82 DNA MER2_type 176 647 -6 333 240 134 29 chr9 61185759 61185930 -56676697 - L1MB7 LINE L1 -1807 4339 4151 680 113 0 0 chr9 61185971 61186068 -56676559 + HY3 scRNA scRNA 3 99 -2 3729 171 41 38 chr9 61186081 61186819 -56675808 - L1MB1 LINE L1 -34 6134 5373 1796 136 29 15 chr9 61186819 61187112 -56675515 - AluJb SINE Alu 0 306 10 3729 171 41 38 chr9 61187112 61187633 -56674994 - L1MB1 LINE L1 -795 5373 4855 1262 191 5 0 chr9 61187645 61187855 -56674772 - AluJo SINE Alu -101 211 1 549 295 99 79 chr9 61187908 61188039 -56674588 - L1MEd LINE L1 -1072 1418 1291 2099 118 3 3 chr9 61188039 61188335 -56674292 - AluSg SINE Alu -14 296 1 549 295 99 79 chr9 61188335 61188462 -56674165 - L1MEd LINE L1 -1199 1291 1168 2339 93 0 10 chr9 61188462 61188764 -56673863 - AluSx SINE Alu -12 300 2 549 295 99 79 chr9 61188764 61189130 -56673497 - L1MEd LINE L1 -1322 1168 682 242 176 0 0 chr9 61189651 61189702 -56672925 - L1MC4a LINE L1 -1864 5944 5894 1111 123 114 14 chr9 61189704 61189923 -56672704 - MSTA LTR MaLR -3 425 185 2385 99 3 0 chr9 61190146 61190448 -56672179 - AluSp SINE Alu -10 303 1 767 108 272 13 chr9 61190643 61190801 -56671826 - MSTA LTR MaLR -229 199 1 1710 138 44 40 chr9 61190836 61191134 -56671493 - AluJo SINE Alu -13 299 1 2174 105 0 0 chr9 61191896 61192249 -56670378 + AluSx SINE Alu 1 353 0 337 291 135 20 chr9 61192251 61192305 -56670322 - MIR SINE MIR -11 251 205 342 256 145 39 chr9 61192305 61192539 -56670088 - MIR SINE MIR 0 262 4 337 291 135 20 chr9 61192539 61192632 -56669995 - MIR SINE MIR -57 205 87 1220 176 105 0 chr9 61193263 61193502 -56669125 + Tigger7 DNA MER2_type 1 264 -2223 433 244 0 0 chr9 61193504 61193594 -56669033 + Tigger7 DNA MER2_type 2491 2580 -7 539 319 67 9 chr9 61193600 61193810 -56668817 - MIR SINE MIR -5 257 36 22 0 0 0 chr9 61195335 61195357 -56667270 + AT_rich Low_complexity Low_complexity 1 22 0 1379 160 22 41 chr9 61196084 61196353 -56666274 - AluJo SINE Alu -13 299 36 251 154 0 0 chr9 61196540 61196579 -56666048 + 5S rRNA rRNA 1 39 -82 412 313 78 57 chr9 61197500 61197781 -56664846 + L2 LINE L2 2576 2862 -452 829 187 66 11 chr9 61198032 61198214 -56664413 - MER20 DNA MER1_type -27 192 1 2224 86 10 7 chr9 61198424 61198715 -56663912 + AluSc SINE Alu 1 292 -17 373 306 61 77 chr9 61198715 61198911 -56663716 + L1MEd LINE L1 625 817 -5555 1681 139 48 19 chr9 61199017 61199178 -56663449 + MER2 DNA MER2_type 1 156 -189 1556 170 15 11 chr9 61199178 61199443 -56663184 - AluJb SINE Alu -14 298 33 1681 139 48 19 chr9 61199443 61199590 -56663037 + MER2 DNA MER2_type 156 318 -27 1810 168 7 10 chr9 61199831 61200134 -56662493 - AluJb SINE Alu -10 302 1 213 39 0 0 chr9 61200148 61200174 -56662453 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2412 72 3 0 chr9 61200206 61200498 -56662129 + AluSp SINE Alu 1 293 -20 307 309 105 15 chr9 61200665 61200998 -56661629 + L1MEd LINE L1 1284 1646 -4738 1999 146 3 29 chr9 61201027 61201336 -56661291 + AluSx SINE Alu 1 301 -11 1611 197 23 33 chr9 61201503 61201807 -56660820 - AluJo SINE Alu -10 302 2 1928 157 0 10 chr9 61201832 61202131 -56660496 + AluSx SINE Alu 1 296 -16 337 287 139 4 chr9 61202364 61202796 -56659831 + L1MEd LINE L1 2263 2715 -3667 460 301 11 6 chr9 61202898 61202937 -56659690 + L1MEd LINE L1 2871 2908 -3474 2356 86 13 0 chr9 61202937 61203238 -56659389 - AluSq SINE Alu -8 305 1 460 301 11 6 chr9 61203238 61203381 -56659246 + L1MEd LINE L1 2908 3054 -3328 4610 104 8 3 chr9 61203408 61204078 -56658549 - HSMAR1 DNA Mariner -1 1286 614 482 133 0 0 chr9 61204078 61204153 -56658474 - HSMAR1 DNA Mariner -846 441 367 * 1434 80 31 0 chr9 61204152 61204377 -56658250 - HSMAR1 DNA Mariner -1049 238 7 407 267 119 0 chr9 61204382 61204633 -56657994 + L1MEd LINE L1 3092 3372 -3010 2101 172 42 24 chr9 61204645 61205370 -56657257 + L1MB7 LINE L1 4918 5658 -526 2273 68 58 0 chr9 61205370 61205662 -56656965 + AluY SINE Alu 1 309 -2 2101 172 42 24 chr9 61205662 61205732 -56656895 + L1MB7 LINE L1 5658 5725 -459 974 161 5 83 chr9 61205775 61205865 -56656762 + L1MB7 LINE L1 5927 6022 -156 2108 146 3 23 chr9 61205865 61206208 -56656419 - MER1B DNA MER1_type -1 336 1 974 161 5 83 chr9 61206208 61206395 -56656232 + L1MB7 LINE L1 6022 6177 -1 301 264 109 9 chr9 61206398 61206508 -56656119 + L1MEd LINE L1 3721 3841 -2541 24 32 0 0 chr9 61206749 61206780 -56655847 + AT_rich Low_complexity Low_complexity 1 31 0 1523 149 62 55 chr9 61206780 61207055 -56655572 - AluJo SINE Alu -23 289 13 757 171 0 0 chr9 61207062 61207185 -56655442 + FLAM_C SINE Alu 1 123 -20 405 111 0 0 chr9 61207205 61207268 -56655359 - LTR37A LTR ERV1 -273 153 91 389 254 53 0 chr9 61207319 61207433 -56655194 + MER21B LTR ERV1 98 217 -646 1043 218 71 47 chr9 61207455 61207863 -56654764 + MER21B LTR ERV1 321 783 -80 200 227 0 23 chr9 61207993 61208037 -56654590 - MIR SINE MIR -19 243 201 2086 93 22 0 chr9 61208402 61208707 -56653920 + AluSx SINE Alu 1 311 0 5011 150 44 24 chr9 61209177 61210055 -56652572 - L1MC3 LINE L1 -32 7753 6850 2101 128 3 26 chr9 61210055 61210368 -56652259 - AluSx SINE Alu -6 306 1 5011 150 44 24 chr9 61210368 61210509 -56652118 - L1MC3 LINE L1 -935 6850 6713 6218 75 19 0 chr9 61210769 61211762 -56650865 - L1PA14 LINE L1 -9 6152 5136 3590 163 33 39 chr9 61211762 61212584 -56650043 - L1PA14 LINE L1 -1242 4904 4088 13306 116 23 28 chr9 61212783 61213812 -56648815 - Tigger1 DNA MER2_type -211 2207 1174 2333 103 7 0 chr9 61213812 61214122 -56648505 - AluSq SINE Alu -1 312 1 13306 116 23 28 chr9 61214122 61215307 -56647320 - Tigger1 DNA MER2_type -1244 1174 5 1504 153 40 4 chr9 61215316 61215564 -56647063 + AluJb SINE Alu 53 309 -3 1237 137 58 19 chr9 61215659 61215886 -56646741 - AluSg/x SINE Alu 0 312 85 331 223 43 0 chr9 61215891 61215985 -56646642 - L1 LINE L1 -1326 4820 4723 280 240 32 32 chr9 61215991 61216116 -56646511 - L1 LINE L1 -1494 4652 4528 332 273 58 12 chr9 61216167 61216339 -56646288 + L1MC4a LINE L1 5866 6045 -1763 5464 134 31 18 chr9 61216394 61217513 -56645114 - L1MA4 LINE L1 -11 6289 5156 26 50 0 0 chr9 61217958 61217998 -56644629 + AT_rich Low_complexity Low_complexity 1 40 0 1013 79 7 7 chr9 61218014 61218154 -56644473 - L1PA15 LINE L1 -2 6163 6024 1079 239 45 0 chr9 61218980 61219223 -56643404 + MLT1B LTR MaLR 132 385 -5 195 159 0 72 chr9 61219226 61219295 -56643332 + CT-rich Low_complexity Low_complexity 5 68 0 210 310 63 84 chr9 61219481 61219623 -56643004 - MER5B DNA MER1_type -4 174 36 390 227 200 27 chr9 61220137 61220322 -56642305 + MIR SINE MIR 34 250 -12 27 62 0 0 chr9 61220774 61220822 -56641805 + AT_rich Low_complexity Low_complexity 1 48 0 2252 121 0 0 chr9 61221136 61221443 -56641184 - AluSx SINE Alu -5 307 1 886 249 59 33 chr9 61221475 61221780 -56640847 - L1ME3A LINE L1 -219 5951 5639 1797 102 10 92 chr9 61222246 61222472 -56640155 + MSTC LTR MaLR 150 346 -82 2190 125 7 0 chr9 61222472 61222776 -56639851 - AluSx SINE Alu -6 306 1 1797 102 10 92 chr9 61222776 61222853 -56639774 + MSTC LTR MaLR 346 428 0 429 20 0 0 chr9 61223768 61223818 -56638809 + (TG)n Simple_repeat Simple_repeat 2 51 0 407 297 143 39 chr9 61224197 61224379 -56638248 + MIR SINE MIR 2 202 -60 228 260 0 0 chr9 61224394 61224444 -56638183 - L2 LINE L2 -9 3263 3214 2193 41 0 15 chr9 61225724 61225994 -56636633 + AluY SINE Alu 1 266 -45 186 265 0 59 chr9 61226040 61226108 -56636519 + MIR SINE MIR 184 247 -15 715 259 116 0 chr9 61226834 61227050 -56635577 + MIR SINE MIR 1 241 -21 824 247 97 61 chr9 61227050 61227131 -56635496 - MLT1L LTR MaLR 0 615 538 2011 109 74 3 chr9 61227131 61227414 -56635213 - AluSx SINE Alu -9 303 1 824 247 97 61 chr9 61227414 61227759 -56634868 - MLT1L LTR MaLR -77 538 72 213 184 26 0 chr9 61228201 61228239 -56634388 - MER5A DNA MER1_type -1 188 150 1830 157 7 10 chr9 61228242 61228541 -56634086 + AluJb SINE Alu 1 298 -14 192 341 136 15 chr9 61229309 61229441 -56633186 - L2 LINE L2 -52 3220 3073 533 241 46 0 chr9 61229799 61229907 -56632720 + MER81 DNA DNA 2 114 0 2553 135 13 3 chr9 61230169 61230553 -56632074 + MLT1B LTR MaLR 3 390 0 2493 121 29 48 chr9 61230557 61230978 -56631649 - MSTC LTR MaLR -10 418 6 2041 107 4 4 chr9 61230981 61231287 -56631340 + AluSg SINE Alu 1 306 0 303 93 0 0 chr9 61231287 61231330 -56631297 + (TA)n Simple_repeat Simple_repeat 2 44 0 983 257 156 13 chr9 61231345 61231730 -56630897 - LTR16C LTR ERVL 0 491 52 24 0 0 0 chr9 61232373 61232397 -56630230 + AT_rich Low_complexity Low_complexity 1 24 0 1748 100 17 4 chr9 61232748 61232989 -56629638 + L1PB1 LINE L1 5905 6148 -3 199 385 63 7 chr9 61233909 61234052 -56628575 - L2 LINE L2 -221 3051 2901 1331 191 52 89 chr9 61234350 61234733 -56627894 - MLT1A2 LTR MaLR -5 369 1 565 301 58 0 chr9 61234745 61234918 -56627709 - MIR SINE MIR 0 262 80 205 300 0 20 chr9 61235605 61235655 -56626972 + L2 LINE L2 3219 3267 -5 717 302 35 10 chr9 61235922 61236124 -56626503 - MIR SINE MIR -48 214 8 2304 103 3 7 chr9 61237064 61237374 -56625253 + AluSx SINE Alu 1 309 -3 300 91 0 0 chr9 61238772 61238816 -56623811 + (TG)n Simple_repeat Simple_repeat 2 45 0 487 242 0 10 chr9 61238915 61239014 -56623613 - L1M4 LINE L1 -2045 4101 4004 2136 158 12 48 chr9 61239015 61239414 -56623213 - MLT1B LTR MaLR 0 390 6 1414 215 124 10 chr9 61239420 61239815 -56622812 - L1M4 LINE L1 -2139 4007 3568 2167 83 41 3 chr9 61239815 61240105 -56622522 + AluY SINE Alu 2 302 -9 552 97 0 0 chr9 61240233 61240305 -56622322 - AluS SINE Alu -240 73 2 2062 237 49 41 chr9 61240308 61241147 -56621480 - L1MDb LINE L1 -4824 1582 775 203 250 0 0 chr9 61241556 61241596 -56621031 + (CTG)n Simple_repeat Simple_repeat 3 42 0 8261 172 26 6 chr9 61241663 61243099 -56619528 + L1M1 LINE L1 14 1477 -6088 7246 111 18 20 chr9 61243103 61244432 -56618195 + L1MA2 LINE L1 4980 6304 0 1259 86 0 0 chr9 61245022 61245185 -56617442 - AluY SINE Alu 0 311 149 942 124 92 7 chr9 61245622 61245775 -56616852 - AluSg/x SINE Alu -15 297 132 2321 82 17 7 chr9 61246281 61246575 -56616052 - AluY SINE Alu -14 297 1 285 250 62 39 chr9 61247013 61247141 -56615486 + MER117 DNA MER1_type 61 191 -6 374 323 61 48 chr9 61247723 61247952 -56614675 + MIR SINE MIR 28 259 -3 2231 115 0 10 chr9 61248828 61249154 -56613473 - AluSx SINE Alu 0 323 1 959 229 153 41 chr9 61249270 61249663 -56612964 + MLT1J1 LTR MaLR 1 437 -9 21 0 0 0 chr9 61250392 61250413 -56612214 + AT_rich Low_complexity Low_complexity 1 21 0 219 146 0 0 chr9 61250520 61250561 -56612066 + (TCCC)n Simple_repeat Simple_repeat 1 41 0 2231 106 0 3 chr9 61250561 61250853 -56611774 - AluSq SINE Alu -22 291 1 273 216 72 111 chr9 61251200 61251381 -56611246 - L1ME4a LINE L1 -103 6018 5845 23 78 0 0 chr9 61251497 61251548 -56611079 + AT_rich Low_complexity Low_complexity 1 51 0 351 250 103 22 chr9 61252123 61252259 -56610368 - L1ME4a LINE L1 0 6121 5975 537 278 105 20 chr9 61252273 61252521 -56610106 - L1ME4a LINE L1 -213 5908 5640 288 278 43 17 chr9 61252578 61252693 -56609934 + MER5A DNA MER1_type 64 181 -8 2241 101 0 3 chr9 61252762 61253080 -56609547 - AluSq SINE Alu 0 317 1 4152 226 76 62 chr9 61253082 61253387 -56609240 - L1MEc LINE L1 -2576 3639 3340 2349 136 113 13 chr9 61253387 61253776 -56608851 - MSTA LTR MaLR 0 428 1 4152 226 76 62 chr9 61253776 61254536 -56608091 - L1MEc LINE L1 -2875 3340 2598 1937 171 0 3 chr9 61254536 61254846 -56607781 - AluJb SINE Alu -3 309 1 4152 226 76 62 chr9 61254846 61255461 -56607166 - L1MEc LINE L1 -3617 2598 1993 3230 186 75 2 chr9 61255461 61256025 -56606602 + MER77 LTR ERV1 1 605 0 1405 162 132 11 chr9 61256172 61256444 -56606183 + AluY SINE Alu 1 305 -6 2298 42 42 3 chr9 61256888 61257173 -56605454 - AluY SINE Alu -14 297 2 501 242 184 18 chr9 61257646 61257869 -56604758 - MIR SINE MIR -1 261 2 1812 122 0 8 chr9 61258709 61258963 -56603664 + AluSx SINE Alu 1 252 -60 528 96 0 0 chr9 61259065 61259138 -56603489 + MSTB LTR MaLR 354 426 0 840 159 7 41 chr9 61259139 61259284 -56603343 - Ricksha DNA DNA -2974 272 133 1740 189 7 0 chr9 61259384 61259686 -56602941 + AluJb SINE Alu 1 304 -8 180 0 0 0 chr9 61259810 61259830 -56602797 + (A)n Simple_repeat Simple_repeat 1 20 0 2304 105 0 0 chr9 61261844 61262140 -56600487 + AluSc SINE Alu 1 296 -13 289 247 31 52 chr9 61262860 61262957 -56599670 + MIR3 SINE MIR 97 191 -17 276 149 0 0 chr9 61263418 61263465 -56599162 + (TCC)n Simple_repeat Simple_repeat 3 49 0 195 162 0 0 chr9 61263460 61263497 -56599130 + T-rich Low_complexity Low_complexity 1 37 0 * 247 250 29 0 chr9 61264677 61264745 -56597882 - MER2 DNA MER2_type -1 344 275 24 0 0 0 chr9 61264770 61264794 -56597833 + AT_rich Low_complexity Low_complexity 1 24 0 906 175 106 0 chr9 61264794 61264983 -56597644 - MER2 DNA MER2_type -135 210 2 1490 97 97 17 chr9 61265215 61265453 -56597174 + L1PA16 LINE L1 5910 6166 0 180 231 0 0 chr9 61265518 61265570 -56597057 + (TA)n Simple_repeat Simple_repeat 2 53 0 657 311 52 9 chr9 61266457 61266669 -56595958 - MIR SINE MIR -15 247 27 2532 66 0 0 chr9 61266671 61266972 -56595655 - AluY SINE Alu -10 301 1 2759 111 8 16 chr9 61267076 61267454 -56595173 + THE1C LTR MaLR 1 375 0 2342 101 0 3 chr9 61267460 61267767 -56594860 - AluSq SINE Alu -7 306 1 243 256 51 102 chr9 61267949 61268086 -56594541 + MER5A DNA MER1_type 21 150 -39 199 388 25 0 chr9 61268115 61268195 -56594432 + MIR SINE MIR 25 106 -156 459 264 285 0 chr9 61268269 61268462 -56594165 - MIR SINE MIR -6 256 9 853 243 22 0 chr9 61268714 61268899 -56593728 + MER5A DNA MER1_type 1 189 0 293 307 86 66 chr9 61269023 61269267 -56593360 - L2 LINE L2 -18 3254 3006 2030 56 0 0 chr9 61270786 61271018 -56591609 + AluY SINE Alu 65 296 -15 234 274 0 0 chr9 61271050 61271101 -56591526 + (TATATG)n Simple_repeat Simple_repeat 4 54 0 279 203 17 0 chr9 61271103 61271162 -56591465 + L1MC4 LINE L1 6652 6711 -1331 940 109 0 0 chr9 61271808 61271936 -56590691 + AluSg/x SINE Alu 176 303 -9 459 205 0 0 chr9 61271937 61272020 -56590607 - L1MB2 LINE L1 -38 6133 6051 498 100 57 0 chr9 61272020 61272090 -56590537 - MLT1H LTR MaLR -475 74 1 1433 162 40 0 chr9 61272306 61272600 -56590027 - L1MD3 LINE L1 0 7995 7471 262 143 0 0 chr9 61272617 61272659 -56589968 + MLT1C LTR MaLR 374 415 -52 21 36 0 0 chr9 61272695 61272723 -56589904 + AT_rich Low_complexity Low_complexity 1 28 0 486 96 0 0 chr9 61273294 61273367 -56589260 + (CCAA)n Simple_repeat Simple_repeat 2 74 0 32 0 0 0 chr9 61273390 61273422 -56589205 + AT_rich Low_complexity Low_complexity 1 32 0 15668 143 26 34 chr9 61273936 61278499 -56584128 - L1MA3 LINE L1 0 7724 3190 367 268 85 30 chr9 61278668 61278832 -56583795 - L1MB2 LINE L1 -2381 5427 5255 2429 80 0 0 chr9 61279062 61279363 -56583264 - AluY SINE Alu -10 301 1 1497 219 51 34 chr9 61279473 61279824 -56582803 - MSTD LTR MaLR 0 396 40 1661 125 84 40 chr9 61279846 61280143 -56582484 - AluSg SINE Alu 0 310 1 287 122 102 0 chr9 61280144 61280193 -56582434 - MSTD LTR MaLR -374 54 1 629 167 0 0 chr9 61280345 61280447 -56582180 - FRAM SINE Alu -40 136 35 1816 140 3 14 chr9 61280461 61280747 -56581880 - AluSx SINE Alu -7 305 23 241 312 71 0 chr9 61281125 61281266 -56581361 - L1MC/D LINE L1 -1926 5882 5732 7088 67 0 10 chr9 61281267 61282143 -56580484 + L1PA7 LINE L1 5286 6152 -2 8227 160 58 35 chr9 61282143 61282268 -56580359 + L1M1 LINE L1 3500 3621 -2681 2010 120 24 10 chr9 61282268 61282559 -56580068 + AluSg SINE Alu 1 295 -15 8227 160 58 35 chr9 61282559 61284591 -56578036 + L1M1 LINE L1 3621 5712 -590 236 154 26 0 chr9 61285340 61285379 -56577248 - LTR16C LTR ERVL -2 489 450 2101 109 3 10 chr9 61285581 61285883 -56576744 + AluSx SINE Alu 1 300 -12 387 0 0 0 chr9 61286489 61286532 -56576095 + (TC)n Simple_repeat Simple_repeat 1 43 0 288 0 0 0 chr9 61286531 61286563 -56576064 + (CA)n Simple_repeat Simple_repeat 1 32 0 * 286 307 59 7 chr9 61286607 61286760 -56575867 + LTR16C LTR ERVL 6 166 -325 1238 118 0 0 chr9 61288390 61288568 -56574059 - L1MA6 LINE L1 -1 6299 6122 804 232 70 43 chr9 61288670 61288999 -56573628 + MLT1H1 LTR MaLR 33 379 -211 682 93 112 0 chr9 61288999 61289106 -56573521 + MSTB LTR MaLR 1 119 -307 255 137 53 15 chr9 61289114 61289245 -56573382 + (TA)n Simple_repeat Simple_repeat 1 136 0 284 186 8 169 chr9 61289755 61289873 -56572754 + MER94 DNA DNA 34 132 -2 570 224 30 8 chr9 61289908 61290042 -56572585 - MIR SINE MIR -125 137 1 2002 108 58 4 chr9 61290145 61290423 -56572204 + AluSc SINE Alu 1 293 -16 2320 111 0 0 chr9 61290954 61291260 -56571367 - AluSx SINE Alu -6 306 1 1664 70 0 0 chr9 61291391 61291590 -56571037 + AluY SINE Alu 1 199 -112 472 25 0 100 chr9 61291590 61291670 -56570957 + AluY SINE Alu 239 310 0 1578 145 13 82 chr9 61292864 61293181 -56569446 + AluJb SINE Alu 2 296 -16 2272 106 3 0 chr9 61293769 61294071 -56568556 + AluSg SINE Alu 1 303 -7 648 241 53 24 chr9 61294137 61294307 -56568320 + MIR SINE MIR 17 191 -71 715 210 192 8 chr9 61294315 61294533 -56568094 - MLT1G1 LTR MaLR 0 595 302 2510 197 16 41 chr9 61294681 61295198 -56567429 - MLT1D LTR MaLR 0 505 2 1062 165 11 119 chr9 61295200 61295497 -56567130 - MLT1D-int LTR MaLR -1 1512 1116 305 229 115 8 chr9 61295892 61296014 -56566613 - HAL1 LINE L1 -1580 927 793 408 208 0 0 chr9 61296040 61296112 -56566515 - HAL1 LINE L1 -1772 735 664 632 169 161 0 chr9 61296139 61296269 -56566358 + MER3 DNA MER1_type 1 151 -58 1304 262 168 6 chr9 61296331 61296808 -56565819 - HAL1 LINE L1 -1949 558 5 305 230 23 46 chr9 61296996 61297083 -56565544 - MIR SINE MIR -72 190 106 892 228 21 42 chr9 61297198 61297435 -56565192 - MIR SINE MIR 0 262 31 502 269 138 49 chr9 61298769 61299160 -56563467 - MER113 DNA MER1_type? -66 455 30 2059 146 0 3 chr9 61299488 61299790 -56562837 - AluSx SINE Alu -6 306 6 484 293 12 43 chr9 61300473 61300502 -56562125 + LTR16C LTR ERVL 157 185 -306 2264 116 3 0 chr9 61300502 61300813 -56561814 + AluSx SINE Alu 1 312 0 484 293 12 43 chr9 61300813 61300947 -56561680 + LTR16C LTR ERVL 185 315 -176 246 211 14 84 chr9 61300938 61300965 -56561662 + LTR16C LTR ERVL 426 453 -38 * 1702 152 126 87 chr9 61300965 61301346 -56561281 + MSTD LTR MaLR 1 396 0 246 211 14 84 chr9 61301346 61301389 -56561238 + LTR16C LTR ERVL 453 491 0 1296 183 0 0 chr9 61301498 61301700 -56560927 + AluJo SINE Alu 25 226 -86 2156 205 47 7 chr9 61302301 61302744 -56559883 - LTR40b LTR ERVL -1 461 1 791 257 69 14 chr9 61302777 61302995 -56559632 + MIR SINE MIR 2 231 -31 2101 68 0 0 chr9 61303949 61304197 -56558430 + AluSq SINE Alu 1 248 -65 3874 144 15 11 chr9 61304198 61304283 -56558344 - LTR39 LTR ERV1 -172 611 528 2967 128 14 2 chr9 61304283 61304712 -56557915 + MER57B LTR ERV1 1 434 0 3874 144 15 11 chr9 61304712 61305235 -56557392 - LTR39 LTR ERV1 -255 528 1 1177 235 124 50 chr9 61305396 61305635 -56556992 - L2 LINE L2 -703 2611 2391 2346 110 0 0 chr9 61305635 61305944 -56556683 + AluSc SINE Alu 1 309 0 1177 235 124 50 chr9 61305944 61306202 -56556425 - L2 LINE L2 -923 2391 2077 540 242 92 0 chr9 61306356 61306509 -56556118 - MER112 DNA MER1_type -6 254 88 255 79 0 0 chr9 61306509 61306547 -56556080 + (TG)n Simple_repeat Simple_repeat 2 39 0 1516 135 0 0 chr9 61306890 61307112 -56555515 - AluSg/x SINE Alu -7 305 84 637 203 146 51 chr9 61307119 61307374 -56555253 - L1MC5 LINE L1 -36 7925 7637 2219 117 0 10 chr9 61307374 61307673 -56554954 + AluSx SINE Alu 1 296 -16 637 203 146 51 chr9 61307673 61307712 -56554915 - L1MC5 LINE L1 -324 7637 7603 2187 95 34 3 chr9 61307860 61308155 -56554472 - AluSx SINE Alu -8 304 1 563 256 27 32 chr9 61308252 61308471 -56554156 + L1MC5 LINE L1 7719 7936 -25 4835 154 18 20 chr9 61308858 61309642 -56552985 - LTR39 LTR ERV1 -1 782 1 355 267 270 13 chr9 61309682 61309989 -56552638 - L1ME4a LINE L1 -4 6117 5732 229 234 0 0 chr9 61310387 61310437 -56552190 - L1ME4a LINE L1 -638 5659 5609 1058 276 111 85 chr9 61310620 61311258 -56551369 - MLT2F LTR ERVL -8 655 1 24 0 0 0 chr9 61311806 61311830 -56550797 + AT_rich Low_complexity Low_complexity 1 24 0 1900 127 4 0 chr9 61311832 61312092 -56550535 + AluSx SINE Alu 1 261 -51 285 293 69 0 chr9 61312734 61312850 -56549777 + LTR67 LTR ERVL 432 555 -2 195 129 0 0 chr9 61312889 61312920 -56549707 + (T)n Simple_repeat Simple_repeat 1 31 0 1043 183 87 16 chr9 61313357 61313609 -56549018 - MER69 DNA AcHobo -2 2524 2255 3571 227 70 97 chr9 61313712 61313993 -56548634 - MER69 DNA AcHobo -1135 1391 1104 2181 122 0 28 chr9 61313993 61314314 -56548313 - AluSx SINE Alu 0 312 1 3571 227 70 97 chr9 61314314 61315462 -56547165 - MER69 DNA AcHobo -1422 1104 1 1915 218 108 2 chr9 61315693 61316110 -56546517 - LTR40b LTR ERVL -1 461 1 533 295 34 7 chr9 61316463 61316612 -56546015 + MIR3 SINE MIR 49 201 -7 895 246 110 20 chr9 61316765 61317241 -56545386 - MLT1G1 LTR MaLR 0 595 64 1161 156 66 5 chr9 61317245 61317457 -56545170 + L1MC2 LINE L1 5934 6158 -186 27 0 0 0 chr9 61317458 61317485 -56545142 + AT_rich Low_complexity Low_complexity 1 27 0 1560 146 0 88 chr9 61317493 61317752 -56544875 - L1PA16 LINE L1 -20 6146 5917 1954 116 0 0 chr9 61317752 61318011 -56544616 + AluSc SINE Alu 44 302 -7 1560 146 0 88 chr9 61318011 61318059 -56544568 - L1PA16 LINE L1 -249 5917 5866 356 147 88 0 chr9 61318054 61318122 -56544505 + L1MC2 LINE L1 6157 6230 -114 * 389 258 13 50 chr9 61318189 61318348 -56544279 - MER74B LTR ERVL -74 548 396 1407 298 140 10 chr9 61318622 61319250 -56543377 - MER50 LTR ERV1 -24 710 1 310 170 54 80 chr9 61319368 61319480 -56543147 - MER69 DNA AcHobo -43 2483 2375 238 235 29 29 chr9 61319529 61319597 -56543030 - MER69 DNA AcHobo -2458 68 1 323 268 82 0 chr9 61320153 61320250 -56542377 + L2 LINE L2 3168 3272 0 1824 108 4 8 chr9 61320304 61320555 -56542072 + AluSq SINE Alu 1 250 -63 23 78 0 0 chr9 61323091 61323142 -56539485 + AT_rich Low_complexity Low_complexity 1 51 0 471 241 49 85 chr9 61323153 61323460 -56539167 - HAL1 LINE L1 -77 2430 2135 372 291 143 20 chr9 61323556 61323759 -56538868 - HAL1 LINE L1 -562 1945 1718 807 240 17 6 chr9 61323759 61323938 -56538689 + MIR SINE MIR 65 245 -17 1076 275 149 16 chr9 61323945 61324508 -56538119 - HAL1 LINE L1 -782 1725 1088 1024 256 113 37 chr9 61325162 61325544 -56537083 - MLT2B1 LTR ERVL -7 513 103 857 144 8 8 chr9 61325545 61325677 -56536950 + FLAM_C SINE Alu 1 132 -11 496 228 18 0 chr9 61325688 61325802 -56536825 - MLT2B1 LTR ERVL -404 116 1 261 250 0 0 chr9 61326255 61326331 -56536296 + (CA)n Simple_repeat Simple_repeat 1 76 0 348 47 0 0 chr9 61326381 61326424 -56536203 + tRNA-Gln-CAG tRNA tRNA 1 43 -32 11265 50 5 0 chr9 61326635 61328728 -56533899 + L1PA6 LINE L1 4033 6144 -10 186 71 0 0 chr9 61328728 61328756 -56533871 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 28 71 0 0 chr9 61328954 61329010 -56533617 + AT_rich Low_complexity Low_complexity 1 56 0 2276 113 0 7 chr9 61329068 61329378 -56533249 + AluSx SINE Alu 1 308 -4 316 205 60 12 chr9 61329600 61329683 -56532944 + MER94 DNA DNA 5 91 -43 1306 173 88 26 chr9 61329833 61329963 -56532664 - MER33 DNA MER1_type -2262 323 203 2280 181 41 58 chr9 61329963 61330477 -56532150 + MLT1D LTR MaLR 1 505 0 1306 173 88 26 chr9 61330477 61330664 -56531963 - MER33 DNA MER1_type -2382 203 1 257 270 0 0 chr9 61330748 61330811 -56531816 + (TG)n Simple_repeat Simple_repeat 1 63 0 1310 221 50 0 chr9 61332175 61332474 -56530153 + MER2 DNA MER2_type 10 323 -22 260 328 67 78 chr9 61333094 61333545 -56529082 + L2 LINE L2 2827 3272 0 355 313 17 17 chr9 61333640 61333755 -56528872 + MER5A DNA MER1_type 51 165 -24 225 0 0 0 chr9 61334119 61334144 -56528483 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 1716 161 17 27 chr9 61334148 61334446 -56528181 - AluJo SINE Alu -17 295 1 23 0 0 0 chr9 61334456 61334479 -56528148 + AT_rich Low_complexity Low_complexity 1 23 0 259 232 72 0 chr9 61336470 61336539 -56526088 + L1MC5 LINE L1 7316 7389 -572 614 225 0 0 chr9 61336546 61336657 -56525970 + AluSc SINE Alu 136 246 -63 385 251 151 28 chr9 61336784 61337035 -56525592 + L1MC4 LINE L1 7468 7749 -293 209 222 0 0 chr9 61337071 61337116 -56525511 + (TA)n Simple_repeat Simple_repeat 1 45 0 262 286 21 62 chr9 61337117 61337251 -56525376 + L1ME4a LINE L1 5935 6060 -61 1901 151 46 0 chr9 61337251 61337535 -56525092 - AluJb SINE Alu -13 299 3 262 286 21 62 chr9 61337535 61337592 -56525035 + L1ME4a LINE L1 6060 6118 -3 23 33 0 0 chr9 61337595 61337625 -56525002 + AT_rich Low_complexity Low_complexity 1 30 0 2446 69 13 3 chr9 61338873 61339179 -56523448 - AluSq SINE Alu -4 309 1 266 218 0 0 chr9 61339225 61339280 -56523347 - MER116 DNA Mariner -25 55 1 764 264 96 30 chr9 61339483 61339846 -56522781 + MARNA DNA Mariner 189 575 -11 371 369 12 0 chr9 61340190 61340350 -56522277 + MIR3 SINE MIR 42 203 -5 2051 151 0 0 chr9 61340544 61340842 -56521785 - AluJb SINE Alu -14 298 1 460 311 128 0 chr9 61341677 61341857 -56520770 - MIR SINE MIR -51 211 9 2259 120 0 0 chr9 61343167 61343475 -56519152 - AluSx SINE Alu -4 308 1 1726 266 64 17 chr9 61344206 61344688 -56517939 - MLT1J LTR MaLR -6 505 1 2406 86 3 0 chr9 61345186 61345490 -56517137 - AluSp SINE Alu -8 305 1 267 288 92 59 chr9 61345683 61345836 -56516791 - MER5A DNA MER1_type -24 165 8 295 281 98 24 chr9 61346941 61347105 -56515522 - MIR SINE MIR -11 251 76 231 248 143 9 chr9 61347380 61347425 -56515202 - MIR SINE MIR -13 249 211 2517 70 0 0 chr9 61347425 61347726 -56514901 - AluSp SINE Alu -12 301 1 231 248 143 9 chr9 61347726 61347785 -56514842 - MIR SINE MIR -51 211 131 1853 132 101 19 chr9 61347885 61348203 -56514424 + MER2 DNA MER2_type 1 344 0 902 257 96 96 chr9 61348261 61348467 -56514160 + L1MC4a LINE L1 4942 5147 -999 1632 159 30 20 chr9 61348467 61348762 -56513865 - AluJb SINE Alu -14 298 1 902 257 96 96 chr9 61348762 61349342 -56513285 + L1MC4a LINE L1 5147 5726 -420 2370 31 38 7 chr9 61349342 61349631 -56512996 - AluY SINE Alu -13 298 1 902 257 96 96 chr9 61349631 61349786 -56512841 + L1MC4a LINE L1 5726 5361 -785 246 32 0 0 chr9 61349786 61349817 -56512810 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 902 257 96 96 chr9 61349817 61349861 -56512766 + L1MC4a LINE L1 5360 5403 -743 247 173 19 19 chr9 61350579 61350631 -56511996 + LTR40b LTR ERVL 1 52 -410 558 244 121 52 chr9 61350646 61351068 -56511559 + L1ME4a LINE L1 5660 6110 -11 1305 205 132 18 chr9 61352566 61352952 -56509675 + L1ME2 LINE L1 5725 6154 -10 808 240 68 0 chr9 61352970 61353191 -56509436 - MIR SINE MIR -14 248 13 308 239 75 0 chr9 61353786 61353853 -56508774 - L2 LINE L2 0 3313 3242 233 111 0 67 chr9 61355918 61355963 -56506664 + MER3 DNA MER1_type 33 74 -135 741 177 165 27 chr9 61356162 61356465 -56506162 + MER3 DNA MER1_type 2234 2618 0 300 223 188 9 chr9 61356667 61356779 -56505848 + HAL1b LINE L1 216 347 -1001 1297 255 95 12 chr9 61356846 61357266 -56505361 - HsTC2a DNA Tc2 -159 585 131 772 288 102 4 chr9 61357420 61357694 -56504933 + MLT1I LTR MaLR 107 407 -2 427 370 34 13 chr9 61358821 61359056 -56503571 + MIR SINE MIR 2 241 -21 626 52 0 0 chr9 61359184 61359261 -56503366 + Alu SINE Alu 221 297 -12 1829 114 26 68 chr9 61359477 61359825 -56502802 - AluSx SINE Alu 0 335 1 443 225 120 21 chr9 61360504 61360646 -56501981 - MER117 DNA MER1_type -41 156 1 183 224 0 61 chr9 61361250 61361299 -56501328 - L2 LINE L2 -24 3248 3203 2208 201 174 48 chr9 61361312 61361914 -56500713 + L1ME1 LINE L1 5219 5957 -209 2216 102 0 49 chr9 61361914 61362238 -56500389 + AluSx SINE Alu 1 308 -4 2208 201 174 48 chr9 61362238 61362475 -56500152 + L1ME1 LINE L1 5957 6163 -3 21 0 0 0 chr9 61362477 61362498 -56500129 + AT_rich Low_complexity Low_complexity 1 21 0 318 309 172 25 chr9 61363384 61363588 -56499039 + L1MC4a LINE L1 5673 5906 -1902 247 246 140 70 chr9 61365009 61365123 -56497504 + L2 LINE L2 3189 3310 -3 365 231 77 19 chr9 61365263 61365367 -56497260 + L2 LINE L2 3197 3306 -7 1150 194 43 32 chr9 61366363 61366616 -56496011 - AluJo SINE Alu -15 297 42 25 83 0 0 chr9 61366658 61366718 -56495909 + AT_rich Low_complexity Low_complexity 1 60 0 1400 154 0 5 chr9 61366993 61367201 -56495426 + AluJb SINE Alu 3 209 -103 237 33 0 0 chr9 61367228 61367258 -56495369 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1465 166 34 0 chr9 61367678 61367913 -56494714 + AluJb SINE Alu 29 271 -41 2075 110 17 7 chr9 61368626 61368917 -56493710 - AluSx SINE Alu -18 294 1 838 210 30 6 chr9 61369535 61369702 -56492925 - MER5B DNA MER1_type -7 171 1 880 199 162 0 chr9 61369710 61369901 -56492726 - MER58A DNA MER1_type 0 224 3 904 200 88 0 chr9 61370446 61370616 -56492011 + MER5A DNA MER1_type 1 185 -4 270 0 0 0 chr9 61370902 61370932 -56491695 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2387 84 3 0 chr9 61371408 61371705 -56490922 - AluSp SINE Alu -15 298 1 8228 113 48 4 chr9 61372169 61373553 -56489074 - L1M1 LINE L1 -4375 3190 1746 1741 198 21 3 chr9 61373600 61373934 -56488693 + MER47B DNA MER2_type 66 405 -13 2531 82 0 0 chr9 61374193 61374497 -56488130 - AluSx SINE Alu -8 304 1 228 272 74 0 chr9 61374654 61374735 -56487892 + L2 LINE L2 3186 3272 0 2338 94 10 0 chr9 61375406 61375703 -56486924 - AluSq SINE Alu -13 300 1 1704 173 77 3 chr9 61375957 61376310 -56486317 - MLT1B LTR MaLR -11 379 1 904 304 4 12 chr9 61376379 61376636 -56485991 + MIR SINE MIR 5 259 -3 2020 151 20 26 chr9 61376662 61377053 -56485574 + MLT1B LTR MaLR 2 390 0 249 266 94 0 chr9 61377860 61377924 -56484703 + MER102a DNA MER1_type 2 71 -259 232 206 8 183 chr9 61377954 61378080 -56484547 + MER102a DNA MER1_type 223 326 -4 1330 157 83 10 chr9 61378380 61378680 -56483947 + MER33 DNA MER1_type 3 324 0 368 20 20 0 chr9 61379025 61379074 -56483553 + (CA)n Simple_repeat Simple_repeat 1 50 0 274 331 92 7 chr9 61379287 61379429 -56483198 + MIR SINE MIR 20 173 -89 408 179 13 0 chr9 61380314 61380392 -56482235 + MER67A LTR ERV1 1 79 -464 2943 194 22 36 chr9 61380393 61381063 -56481564 + MER67B LTR ERV1 1 661 0 2026 215 26 41 chr9 61381070 61381234 -56481393 + MLT1E LTR MaLR 27 192 -401 2535 143 21 37 chr9 61381234 61381667 -56480960 - MSTB LTR MaLR 0 426 1 2026 215 26 41 chr9 61381667 61382019 -56480608 + MLT1E LTR MaLR 192 537 -56 833 107 8 0 chr9 61382058 61382180 -56480447 + L1PA10 LINE L1 6045 6167 -1 341 194 0 0 chr9 61382188 61382255 -56480372 + MLT1E LTR MaLR 588 654 0 2030 70 39 0 chr9 61382408 61382664 -56479963 + AluSc SINE Alu 28 293 -16 240 222 0 19 chr9 61382691 61382745 -56479882 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 749 206 24 75 chr9 61382865 61383157 -56479470 - L1ME2 LINE L1 -26 6138 5862 21 36 0 0 chr9 61383209 61383237 -56479390 + AT_rich Low_complexity Low_complexity 1 28 0 323 294 66 56 chr9 61383388 61383585 -56479042 + L1MC4a LINE L1 3725 3923 -2223 189 0 0 0 chr9 61383748 61383769 -56478858 + (GAAA)n Simple_repeat Simple_repeat 1 21 0 1320 288 84 55 chr9 61383774 61384285 -56478342 + HAL1 LINE L1 229 779 -1728 2494 53 3 0 chr9 61384285 61384584 -56478043 - AluY SINE Alu -11 300 1 1320 288 84 55 chr9 61384584 61384975 -56477652 + HAL1 LINE L1 779 1157 -1350 1875 118 82 0 chr9 61385668 61385948 -56476679 + AluSx SINE Alu 1 303 -9 309 297 95 23 chr9 61386178 61386562 -56476065 + L1MC4a LINE L1 5255 5672 -449 7015 29 0 1 chr9 61386622 61387491 -56475136 - L1PA4 LINE L1 -2 6153 5286 334 312 71 0 chr9 61387492 61387633 -56474994 + L1MC4a LINE L1 5732 5882 -1926 2226 108 10 0 chr9 61387958 61388253 -56474374 + AluSx SINE Alu 1 298 -14 27 62 0 0 chr9 61388798 61388846 -56473781 + AT_rich Low_complexity Low_complexity 1 48 0 2124 119 11 11 chr9 61388846 61389132 -56473495 - AluSx SINE Alu -26 286 1 725 236 71 39 chr9 61389145 61389399 -56473228 - L1ME2 LINE L1 -303 5818 5557 1160 195 145 45 chr9 61389446 61389867 -56472760 + MER110A LTR ERV1 1 463 -5 367 241 18 36 chr9 61390048 61390160 -56472467 - MER94 DNA DNA 0 134 25 3528 78 2 2 chr9 61390175 61390626 -56472001 + MLT2A2 LTR ERVL 3 453 0 275 225 23 101 chr9 61390741 61390792 -56471835 - MIR SINE MIR -12 250 197 2350 81 0 7 chr9 61390792 61391087 -56471540 - AluSc SINE Alu -16 293 1 275 225 23 101 chr9 61391087 61391164 -56471463 - MIR SINE MIR -65 197 132 259 280 75 28 chr9 61391150 61391257 -56471370 + MER5B DNA MER1_type 67 178 0 * 236 273 0 0 chr9 61392170 61392225 -56470402 + (CA)n Simple_repeat Simple_repeat 2 56 0 446 237 218 6 chr9 61392632 61392788 -56469839 - MER5A DNA MER1_type 0 189 1 388 259 190 6 chr9 61393056 61393214 -56469413 + MER5A DNA MER1_type 3 189 0 930 186 12 0 chr9 61393261 61393428 -56469199 + FAM SINE Alu 1 169 -6 1840 145 34 51 chr9 61393938 61394290 -56468337 + MER7A DNA MER2_type 3 346 0 400 256 26 0 chr9 61395445 61395562 -56467065 + L1MC/D LINE L1 5702 5821 -1987 639 256 40 55 chr9 61396870 61397291 -56465336 - L1MC5 LINE L1 -48 7913 7499 234 53 53 0 chr9 61397344 61397382 -56465245 - L1MB7 LINE L1 0 6184 6145 625 210 138 85 chr9 61397386 61397827 -56464800 + MLT1D LTR MaLR 5 466 -1 244 105 0 0 chr9 61397831 61397869 -56464758 - L1MB8 LINE L1 -34 6144 6107 842 164 0 0 chr9 61397870 61398004 -56464623 - AluSg/x SINE Alu -7 303 170 1647 146 33 3 chr9 61398004 61398306 -56464321 - L1MB8 LINE L1 -66 6112 5802 21 36 0 0 chr9 61398484 61398512 -56464115 + AT_rich Low_complexity Low_complexity 1 28 0 231 305 42 0 chr9 61399354 61399472 -56463155 + MLT1H1-int LTR MaLR 1248 1370 -1 389 241 36 36 chr9 61399520 61399632 -56462995 + MLT1H1 LTR MaLR 32 143 -412 2418 214 41 46 chr9 61399652 61399702 -56462925 + L1ME2 LINE L1 4672 4721 -1443 1929 154 0 17 chr9 61399702 61400001 -56462626 + AluJo SINE Alu 3 296 -16 2418 214 41 46 chr9 61400001 61400987 -56461640 + L1ME2 LINE L1 4721 5696 -468 2089 119 3 0 chr9 61400987 61401272 -56461355 + AluSq SINE Alu 15 300 -13 2418 214 41 46 chr9 61401272 61401618 -56461009 + L1ME2 LINE L1 5696 6042 -122 404 158 0 0 chr9 61401611 61401687 -56460940 + L1MA9 LINE L1 6237 6312 0 * 480 219 86 7 chr9 61401677 61401828 -56460799 + L1ME2 LINE L1 6002 6164 0 694 261 78 52 chr9 61401870 61402176 -56460451 + L2 LINE L2 3000 3313 0 186 407 12 0 chr9 61402296 61402377 -56460250 - L2 LINE L2 -4 3268 3187 284 250 103 22 chr9 61403310 61403446 -56459181 - L1ME4a LINE L1 0 6121 5975 499 287 97 8 chr9 61403460 61403707 -56458920 - L1ME4a LINE L1 -213 5908 5640 298 313 26 0 chr9 61403765 61403880 -56458747 + MER5A DNA MER1_type 64 181 -8 2234 88 3 3 chr9 61403949 61404266 -56458361 - AluSq SINE Alu 0 317 1 3655 119 27 2 chr9 61404362 61404950 -56457677 - L1MA4 LINE L1 -11 6289 5687 2742 206 45 21 chr9 61404950 61405582 -56457045 + L1PB4 LINE L1 5469 6119 -37 2376 106 0 0 chr9 61405582 61405893 -56456734 + AluSx SINE Alu 1 311 -1 2742 206 45 21 chr9 61405893 61405931 -56456696 + L1PB4 LINE L1 6119 6155 -1 383 78 16 0 chr9 61408331 61408395 -56454232 + (TA)n Simple_repeat Simple_repeat 2 66 0 1739 194 100 51 chr9 61409366 61409856 -56452771 + MER68 LTR ERV1 1 514 -48 252 290 25 31 chr9 61411063 61411225 -56451402 + HAL1b LINE L1 73 233 -1115 1260 242 157 38 chr9 61411235 61411978 -56450649 + HAL1b LINE L1 279 933 -415 1883 158 0 7 chr9 61411978 61412262 -56450365 + AluSx SINE Alu 1 282 -30 248 0 0 30 chr9 61412265 61412298 -56450329 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 1260 242 157 38 chr9 61412298 61412336 -56450291 + HAL1b LINE L1 934 1157 -191 228 35 0 0 chr9 61412368 61412397 -56450230 + (CA)n Simple_repeat Simple_repeat 2 30 0 969 221 4 33 chr9 61413644 61413884 -56448743 + MER97a DNA MER1_type? 2 234 -660 773 197 75 46 chr9 61414088 61414393 -56448234 + MER97a DNA MER1_type? 581 894 0 183 80 0 0 chr9 61417438 61417463 -56445164 + (GAA)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr9 61418303 61418324 -56444303 + AT_rich Low_complexity Low_complexity 1 21 0 306 73 0 0 chr9 61418324 61418365 -56444262 + (TG)n Simple_repeat Simple_repeat 2 42 0 837 191 69 0 chr9 61418640 61418813 -56443814 + MER5A DNA MER1_type 2 186 -3 405 299 49 14 chr9 61419436 61419580 -56443047 + MIR SINE MIR 64 212 -50 26 0 0 0 chr9 61419607 61419633 -56442994 + AT_rich Low_complexity Low_complexity 1 26 0 2227 113 0 3 chr9 61419633 61419926 -56442701 - AluSq SINE Alu -21 292 1 2073 134 7 0 chr9 61419928 61420218 -56442409 - AluSx SINE Alu -20 292 1 2270 124 41 10 chr9 61420324 61420711 -56441916 + MSTA LTR MaLR 30 428 0 2013 225 92 15 chr9 61420826 61421513 -56441114 + L1M4 LINE L1 3709 4448 -1698 747 108 0 0 chr9 61421635 61421746 -56440881 + (TTCCC)n Simple_repeat Simple_repeat 4 114 0 2256 94 3 0 chr9 61421746 61421903 -56440724 - AluSq SINE Alu -24 289 129 216 0 0 0 chr9 61421903 61421927 -56440700 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2256 94 3 0 chr9 61421927 61422057 -56440570 - AluSq SINE Alu -184 129 1 553 271 84 31 chr9 61422186 61422275 -56440352 - MIR SINE MIR -13 249 166 2295 179 33 16 chr9 61422275 61422700 -56439927 - MSTB1 LTR MaLR 0 432 1 553 271 84 31 chr9 61422700 61422835 -56439792 - MIR SINE MIR -96 166 13 2926 7 0 0 chr9 61422928 61423237 -56439390 - AluYa5 SINE Alu -2 309 1 2300 137 3 0 chr9 61423284 61423619 -56439008 + MER1B DNA MER1_type 2 337 0 323 329 15 7 chr9 61423667 61423804 -56438823 - MER5A DNA MER1_type -49 140 3 5666 112 53 1 chr9 61424604 61425458 -56437169 - Tigger3b DNA MER2_type -1 1230 333 749 183 0 0 chr9 61425471 61425591 -56437036 - Tigger3b DNA MER2_type -1111 120 1 323 204 7 21 chr9 61425696 61425841 -56436786 + L1ME3A LINE L1 5910 6096 -74 351 96 0 0 chr9 61426238 61426290 -56436337 + (TG)n Simple_repeat Simple_repeat 2 53 0 212 308 65 9 chr9 61426999 61427106 -56435521 - MER5A DNA MER1_type -18 171 59 527 340 13 6 chr9 61427620 61427776 -56434851 - L2 LINE L2 0 3272 3116 2521 57 0 3 chr9 61428205 61428506 -56434121 - AluSc SINE Alu -9 300 1 213 241 0 0 chr9 61429271 61429325 -56433302 + GA-rich Low_complexity Low_complexity 2 55 0 1329 202 114 10 chr9 61429895 61430303 -56432324 - MLT1J LTR MaLR -6 505 8 184 340 0 0 chr9 61431494 61431544 -56431083 - MIR SINE MIR -199 63 14 2032 141 103 0 chr9 61432290 61432638 -56429989 - MLT1B LTR MaLR -5 385 2 3125 196 3 16 chr9 61432711 61433190 -56429437 + MER68 LTR ERV1 3 475 -87 1937 143 52 25 chr9 61433190 61433553 -56429074 + THE1C LTR MaLR 1 373 -2 3125 196 3 16 chr9 61433553 61433640 -56428987 + MER68 LTR ERV1 475 562 0 7405 44 6 1 chr9 61433641 61434534 -56428093 - L1PA7 LINE L1 -3 6151 5255 1974 100 74 0 chr9 61435541 61435810 -56426817 - AluSx SINE Alu 0 312 24 295 277 76 7 chr9 61435936 61436071 -56426556 - MIR SINE MIR -64 198 55 189 152 0 0 chr9 61436128 61436161 -56426466 - L2 LINE L2 -219 3053 3021 505 236 82 2 chr9 61436969 61437352 -56425275 - LTR16C LTR ERVL -2 489 6 252 0 0 0 chr9 61437396 61437424 -56425203 + (TG)n Simple_repeat Simple_repeat 1 28 0 225 0 0 0 chr9 61437423 61437448 -56425179 + (GA)n Simple_repeat Simple_repeat 1 25 0 * 2120 109 3 10 chr9 61438054 61438356 -56424271 - AluSx SINE Alu -12 300 1 3780 40 0 4 chr9 61438500 61438950 -56423677 + L1PA6 LINE L1 5707 6154 0 2183 116 3 3 chr9 61438965 61439259 -56423368 + AluSg SINE Alu 2 295 -15 223 378 94 0 chr9 61439538 61439665 -56422962 - MER91C DNA MER1_type 0 140 2 914 216 50 0 chr9 61440016 61440215 -56422412 + MER3 DNA MER1_type 1 209 0 2885 124 9 18 chr9 61441451 61441894 -56420733 + L1PA16 LINE L1 5719 6157 -9 10776 153 42 75 chr9 61442068 61443038 -56419589 + Tigger1 DNA MER2_type 24 1025 -1393 1963 160 87 20 chr9 61443038 61443439 -56419188 - MSTA LTR MaLR 0 428 1 10776 153 42 75 chr9 61443439 61443676 -56418951 + Tigger1 DNA MER2_type 1025 1269 -1149 2577 70 0 3 chr9 61443676 61443988 -56418639 + AluY SINE Alu 1 311 0 10776 153 42 75 chr9 61443988 61444407 -56418220 + Tigger1 DNA MER2_type 1269 1701 -717 1851 162 50 0 chr9 61444407 61444527 -56418100 + AluJo SINE Alu 1 113 -199 396 0 0 0 chr9 61444527 61444571 -56418056 + (TAA)n Simple_repeat Simple_repeat 2 45 0 1851 162 50 0 chr9 61444571 61444747 -56417880 + AluJo SINE Alu 113 312 0 10776 153 42 75 chr9 61444747 61445473 -56417154 + Tigger1 DNA MER2_type 1701 2292 -126 1913 143 17 40 chr9 61445473 61445824 -56416803 + MER61A LTR ERV1 1 343 0 10776 153 42 75 chr9 61445824 61445947 -56416680 + Tigger1 DNA MER2_type 2292 2418 0 2469 219 16 34 chr9 61447421 61448046 -56414581 - L1ME2 LINE L1 -1 6163 5550 740 103 9 0 chr9 61448232 61448348 -56414279 + (TTTC)n Simple_repeat Simple_repeat 1 117 0 3359 201 53 30 chr9 61449230 61449395 -56413232 + L1PA15 LINE L1 5285 5445 -720 6064 134 152 17 chr9 61449395 61450518 -56412109 - MER52C LTR ERV1 -1 1277 3 3359 201 53 30 chr9 61450518 61451200 -56411427 + L1PA15 LINE L1 5445 6152 -13 968 161 11 6 chr9 61451206 61451380 -56411247 + L1MC2 LINE L1 5680 5854 -490 649 186 17 23 chr9 61451381 61451540 -56411087 + MLT2B2 LTR ERVL 222 432 -83 1874 170 37 7 chr9 61452028 61452366 -56410261 - MLT1A1 LTR MaLR 0 365 18 810 193 6 12 chr9 61452407 61452573 -56410054 + L1M4 LINE L1 5045 5209 -937 180 259 111 0 chr9 61453040 61453094 -56409533 + L2 LINE L2 2583 2642 -672 * 434 345 35 10 chr9 61453091 61453294 -56409333 + MIR SINE MIR 47 254 -8 2798 126 31 2 chr9 61453856 61454270 -56408357 - MSTA LTR MaLR 0 428 3 4548 143 49 16 chr9 61454272 61454906 -56407721 - MSTA-int LTR MaLR 0 1651 988 2481 57 0 13 chr9 61454906 61455207 -56407420 - AluY SINE Alu -14 297 1 4548 143 49 16 chr9 61455207 61455307 -56407320 - MSTA-int LTR MaLR -663 988 893 3012 194 34 80 chr9 61455306 61455709 -56406918 + L1MC1 LINE L1 2861 3281 -2865 * 626 192 8 48 chr9 61455709 61455834 -56406793 + FLAM_A SINE Alu 1 120 -13 3012 194 34 80 chr9 61455834 61456365 -56406262 + L1MC1 LINE L1 3281 3752 -2394 1011 123 0 0 chr9 61456365 61456520 -56406107 + MER2 DNA MER2_type 56 210 -135 30 59 0 0 chr9 61456520 61456571 -56406056 + AT_rich Low_complexity Low_complexity 1 51 0 6591 179 34 16 chr9 61456663 61457348 -56405279 + L1MC1 LINE L1 4404 5075 -1258 2297 113 13 3 chr9 61457348 61457658 -56404969 + AluSq SINE Alu 1 313 0 6591 179 34 16 chr9 61457658 61458361 -56404266 + L1MC1 LINE L1 5075 5842 -491 2377 71 20 7 chr9 61458361 61458658 -56403969 + AluSg1 SINE Alu 1 301 -8 6591 179 34 16 chr9 61458658 61459159 -56403468 + L1MC1 LINE L1 5842 6333 0 352 19 19 37 chr9 61459810 61459864 -56402763 + (GAGAA)n Simple_repeat Simple_repeat 5 57 0 2055 187 12 8 chr9 61460065 61460466 -56402161 + L1MA4 LINE L1 5893 6295 -5 756 193 13 7 chr9 61460711 61460861 -56401766 - LTR32 LTR ERVL -4 467 317 237 208 62 0 chr9 61460862 61460910 -56401717 - LTR32 LTR ERVL -104 367 317 1037 202 6 0 chr9 61460917 61461100 -56401527 - LTR32 LTR ERVL -119 352 169 267 185 9 102 chr9 61461558 61461666 -56400961 + HERVFH19I LTR ERV1 241 338 -7381 501 253 25 40 chr9 61462192 61462390 -56400237 - MIR SINE MIR -1 261 67 192 77 0 0 chr9 61462842 61462868 -56399759 + (TG)n Simple_repeat Simple_repeat 1 26 0 2775 150 29 7 chr9 61463894 61464340 -56398287 + LTR32 LTR ERVL 15 470 -1 2162 103 7 0 chr9 61464472 61464753 -56397874 + AluSx SINE Alu 1 283 -29 275 0 0 28 chr9 61464756 61464792 -56397835 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1938 219 173 48 chr9 61465626 61466228 -56396399 + L1ME1 LINE L1 5219 5956 -210 2065 120 0 52 chr9 61466228 61466553 -56396074 + AluSx SINE Alu 1 308 -4 1938 219 173 48 chr9 61466553 61466791 -56395836 + L1ME1 LINE L1 5956 6163 -3 21 0 0 0 chr9 61466793 61466814 -56395813 + AT_rich Low_complexity Low_complexity 1 21 0 806 149 0 27 chr9 61467698 61467846 -56394781 + AluSg/x SINE Alu 168 311 -1 188 291 119 49 chr9 61469266 61469510 -56393117 + L2 LINE L2 1685 1945 -1369 1415 175 82 7 chr9 61469563 61469855 -56392772 - L1MC1 LINE L1 -1 6332 6019 2009 123 0 20 chr9 61469858 61470150 -56392477 + AluSc SINE Alu 1 286 -23 799 184 84 0 chr9 61470251 61470441 -56392186 - L1 LINE L1 -1019 5127 4922 2154 130 7 3 chr9 61470493 61470800 -56391827 + AluSx SINE Alu 1 308 -4 337 121 0 17 chr9 61470926 61470984 -56391643 - LTR54 LTR ERV1 0 510 454 375 172 0 0 chr9 61470997 61471061 -56391566 - AluSc SINE Alu -105 194 131 * 1446 196 52 74 chr9 61471060 61471463 -56391164 - LTR54 LTR ERV1 -45 465 72 831 152 0 0 chr9 61471480 61471605 -56391022 - FLAM_C SINE Alu -13 130 6 468 174 0 23 chr9 61471608 61471694 -56390933 - LTR54 LTR ERV1 -426 84 1 491 184 65 24 chr9 61471711 61471866 -56390761 - LTR49 LTR ERV1 -7 780 484 2260 126 0 0 chr9 61471873 61472183 -56390444 - AluSx SINE Alu -2 310 1 2630 141 32 20 chr9 61472223 61472662 -56389965 + MER72 LTR ERV1 279 722 0 531 253 65 41 chr9 61472673 61472843 -56389784 + MER58A DNA MER1_type 48 221 -3 232 243 0 0 chr9 61472999 61473069 -56389558 + A-rich Low_complexity Low_complexity 1 70 0 426 154 0 0 chr9 61473304 61473369 -56389258 + AluS SINE Alu 2 66 -246 198 237 40 40 chr9 61473640 61473716 -56388911 + L2 LINE L2 2989 3064 -249 2076 145 3 0 chr9 61474050 61474361 -56388266 + AluJb SINE Alu 1 312 0 235 264 52 45 chr9 61474394 61474549 -56388078 + L1MC5 LINE L1 7030 7185 -776 1205 216 25 4 chr9 61474689 61474934 -56387693 + AluJo SINE Alu 45 294 -18 285 268 42 29 chr9 61475076 61475267 -56387360 + MIR SINE MIR 24 261 -1 726 227 0 6 chr9 61475283 61475468 -56387159 - AluJb SINE Alu 0 312 132 455 224 189 43 chr9 61476744 61477093 -56385534 + HAL1 LINE L1 2108 2507 0 343 247 172 43 chr9 61477079 61477265 -56385362 + HAL1 LINE L1 2296 2505 -2 * 245 192 65 162 chr9 61477296 61477525 -56385102 + L1M4 LINE L1 5052 5258 -888 603 141 215 15 chr9 61477541 61477676 -56384951 - MER4C LTR ERV1 -18 447 286 963 196 11 0 chr9 61477810 61477994 -56384633 + AluJo SINE Alu 117 302 -10 183 42 0 0 chr9 61478126 61478150 -56384477 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1368 203 8 8 chr9 61478181 61478442 -56384185 + AluJb SINE Alu 26 286 -26 2305 98 17 0 chr9 61478473 61478770 -56383857 + AluSx SINE Alu 1 302 -10 343 229 73 42 chr9 61478770 61478866 -56383761 + L2 LINE L2 3212 3310 -3 674 322 49 35 chr9 61478895 61479046 -56383581 + L3 LINE CR1 592 739 -838 2343 96 62 6 chr9 61479046 61479401 -56383226 + THE1C LTR MaLR 1 375 0 674 322 49 35 chr9 61479401 61479674 -56382953 + L3 LINE CR1 739 1022 -555 262 155 28 84 chr9 61479837 61479908 -56382719 + AluJ/FLAM SINE Alu 1 67 -235 226 209 73 82 chr9 61480103 61480213 -56382414 - L1MC/D LINE L1 -1992 5816 5708 276 130 19 0 chr9 61480499 61480553 -56382074 - MER5C DNA MER1_type 0 324 270 2328 119 0 0 chr9 61481083 61481386 -56381241 + AluSp SINE Alu 1 303 -10 270 314 133 23 chr9 61481386 61481650 -56380977 + HAL1b LINE L1 576 868 -480 582 188 0 0 chr9 61481653 61481754 -56380873 + MER67A LTR ERV1 443 543 0 771 166 0 76 chr9 61481881 61482026 -56380601 + AluJb SINE Alu 3 136 -176 2184 131 0 16 chr9 61482536 61482848 -56379779 - AluSx SINE Alu -5 307 1 242 200 0 0 chr9 61483220 61483260 -56379367 - Alu SINE Alu -268 40 1 263 256 11 11 chr9 61483577 61483667 -56378960 + L2 LINE L2 2570 2659 -655 1906 149 0 10 chr9 61483869 61484170 -56378457 - AluJb SINE Alu -6 306 9 307 235 92 0 chr9 61484488 61484586 -56378041 - L1MC/D LINE L1 -386 5735 5629 1833 160 0 4 chr9 61484814 61485095 -56377532 + AluSx SINE Alu 23 302 -10 1789 155 35 0 chr9 61485287 61485571 -56377056 + LTR32 LTR ERVL 8 301 -170 406 245 69 63 chr9 61485729 61485888 -56376739 + MIR SINE MIR 31 190 -72 1931 107 3 98 chr9 61485957 61486294 -56376333 - AluY SINE Alu -6 305 1 1893 131 0 4 chr9 61486294 61486569 -56376058 + Tigger3(Golem) DNA MER2_type 2756 3029 0 371 148 0 0 chr9 61486849 61486910 -56375717 - MSTD LTR MaLR 0 396 336 2435 84 0 7 chr9 61486916 61487225 -56375402 + AluY SINE Alu 1 307 -4 2160 133 0 0 chr9 61487236 61487536 -56375091 + AluSg SINE Alu 2 301 -9 449 305 62 11 chr9 61488182 61488359 -56374268 + L2 LINE L2 2034 2219 -1095 1559 205 110 2 chr9 61488360 61488769 -56373858 + Charlie4a DNA MER1_type 40 492 -16 306 50 0 0 chr9 61488806 61488846 -56373781 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 2304 96 3 0 chr9 61488849 61489141 -56373486 - AluSx SINE Alu -19 293 1 837 286 93 7 chr9 61489148 61489417 -56373210 - MER21B LTR ERV1 -553 310 19 605 165 37 0 chr9 61489561 61489670 -56372957 + FAM SINE Alu 42 154 -31 459 136 0 0 chr9 61490080 61490146 -56372481 + FRAM/FAM SINE Alu 25 90 -95 201 309 60 12 chr9 61490347 61490431 -56372196 - MIR SINE MIR -102 160 73 903 189 0 6 chr9 61490434 61490593 -56372034 - AluJo SINE Alu -120 192 35 1335 223 28 0 chr9 61490621 61490908 -56371719 - MER58B DNA MER1_type -39 302 8 473 74 123 0 chr9 61491006 61491087 -56371540 + LTR23 LTR ERV1 3 93 -344 1317 115 102 71 chr9 61491096 61491223 -56371404 + LTR23 LTR ERV1 2 124 -313 2081 118 0 67 chr9 61491223 61491554 -56371073 - AluSg SINE Alu -1 309 1 1317 115 102 71 chr9 61491554 61491721 -56370906 + LTR23 LTR ERV1 124 305 -132 914 215 55 39 chr9 61491721 61491977 -56370650 + AluJb SINE Alu 1 260 -52 261 221 0 0 chr9 61492613 61492681 -56369946 + (CA)n Simple_repeat Simple_repeat 1 68 0 625 169 119 0 chr9 61492984 61493102 -56369525 - FLAM_C SINE Alu -10 133 2 1943 143 0 27 chr9 61493428 61493589 -56369038 - AluJb SINE Alu -20 292 141 2129 138 0 7 chr9 61493589 61493894 -56368733 - AluSx SINE Alu -9 303 1 1943 143 0 27 chr9 61493894 61494032 -56368595 - AluJb SINE Alu -171 141 1 21 0 0 0 chr9 61494033 61494054 -56368573 + AT_rich Low_complexity Low_complexity 1 21 0 380 153 23 137 chr9 61494268 61494370 -56368257 + MIR SINE MIR 120 205 -57 291 114 0 0 chr9 61494370 61494414 -56368213 + (CA)n Simple_repeat Simple_repeat 2 45 0 380 153 23 137 chr9 61494414 61494442 -56368185 + MIR SINE MIR 205 235 -27 1567 150 54 46 chr9 61494567 61494847 -56367780 - AluJo SINE Alu -30 282 1 1958 128 21 0 chr9 61495484 61495772 -56366855 - AluSx SINE Alu -15 297 4 1580 201 3 13 chr9 61497343 61497656 -56364971 - AluJb SINE Alu -1 311 2 2355 101 0 0 chr9 61498248 61498546 -56364081 + AluSx SINE Alu 5 302 -10 448 283 57 60 chr9 61498764 61499109 -56363518 - MLT1J2 LTR MaLR -19 390 53 218 236 213 69 chr9 61499423 61499597 -56363030 + L3 LINE CR1 1378 1576 -1 192 242 111 144 chr9 61499720 61499815 -56362812 + MIR3 SINE MIR 34 131 -77 2293 119 0 0 chr9 61499815 61500126 -56362501 + AluSx SINE Alu 1 311 -1 192 242 111 144 chr9 61500126 61500160 -56362467 + MIR3 SINE MIR 131 160 -48 2319 172 58 17 chr9 61500160 61500643 -56361984 + MLT1D LTR MaLR 1 503 -2 192 242 111 144 chr9 61500643 61500665 -56361962 + MIR3 SINE MIR 160 181 -27 815 153 42 0 chr9 61500739 61500883 -56361744 - FAM SINE Alu -11 174 25 605 165 37 0 chr9 61501293 61501402 -56361225 - FAM SINE Alu -31 154 42 1229 257 77 98 chr9 61501547 61501823 -56360804 + MER21B LTR ERV1 19 280 -583 2299 84 30 0 chr9 61501823 61502120 -56360507 + AluSx SINE Alu 1 306 -6 1229 257 77 98 chr9 61502120 61502363 -56360264 + MER21B LTR ERV1 280 527 -336 4684 121 8 37 chr9 61502363 61502824 -56359803 + LTR8 LTR ERV1 1 437 -254 432 90 0 0 chr9 61502824 61502891 -56359736 - L1PA8 LINE L1 -2 6170 6104 4684 121 8 37 chr9 61502891 61503140 -56359487 + LTR8 LTR ERV1 437 691 0 823 227 72 50 chr9 61503142 61503419 -56359208 + MER21B LTR ERV1 526 808 -55 263 299 0 23 chr9 61504337 61504424 -56358203 + MIR SINE MIR 79 163 -99 290 250 53 0 chr9 61504901 61504977 -56357650 - L2 LINE L2 -7 3265 3186 1480 160 71 4 chr9 61505144 61505412 -56357215 - AluJb SINE Alu -26 286 1 260 72 0 72 chr9 61505921 61505990 -56356637 + (TTTC)n Simple_repeat Simple_repeat 3 66 0 1974 114 4 7 chr9 61505990 61506261 -56356366 - AluSx SINE Alu -38 274 5 264 344 11 22 chr9 61506698 61506788 -56355839 + MIR SINE MIR 42 130 -78 1390 145 145 19 chr9 61507061 61507323 -56355304 + AluJb SINE Alu 1 295 -7 2033 104 93 0 chr9 61507737 61508007 -56354620 - AluSx SINE Alu -17 295 1 273 146 0 0 chr9 61508225 61508273 -56354354 + (T)n Simple_repeat Simple_repeat 1 48 0 216 253 127 0 chr9 61508645 61508724 -56353903 - L2 LINE L2 -2530 784 696 7355 54 2 4 chr9 61509014 61510272 -56352355 - L1PA5 LINE L1 -1 6153 4898 357 194 0 112 chr9 61510372 61510434 -56352193 - L2 LINE L2 -40 3273 3224 2231 108 20 0 chr9 61510434 61510730 -56351897 - AluSx SINE Alu -10 302 1 357 194 0 112 chr9 61510730 61510765 -56351862 - L2 LINE L2 -89 3224 3187 189 0 0 0 chr9 61511438 61511459 -56351168 + (TTTTA)n Simple_repeat Simple_repeat 4 24 0 652 179 34 0 chr9 61511461 61511578 -56351049 - FLAM_A SINE Alu -12 121 1 276 253 51 0 chr9 61511900 61511979 -56350648 - MIR SINE MIR -60 202 120 1565 143 23 83 chr9 61512214 61512514 -56350113 + AluSx SINE Alu 1 282 -30 268 0 95 0 chr9 61512517 61512559 -56350068 + A-rich Low_complexity Low_complexity 2 47 0 270 333 124 13 chr9 61512637 61512790 -56349837 - MIR3 SINE MIR -7 201 32 2352 87 13 0 chr9 61512906 61513215 -56349412 - AluSp SINE Alu 0 313 1 263 266 93 36 chr9 61513237 61513376 -56349251 + L1MEc LINE L1 50 196 -6200 1979 128 30 33 chr9 61513392 61513697 -56348930 - AluSx SINE Alu -8 304 1 1297 158 23 5 chr9 61513701 61513922 -56348705 - AluJb SINE Alu -18 294 70 282 314 63 21 chr9 61513966 61514157 -56348470 + L1MEc LINE L1 225 423 -5973 311 218 81 0 chr9 61514456 61514543 -56348084 + L1MEc LINE L1 661 754 -5451 984 186 34 34 chr9 61514547 61514751 -56347876 - MLT1A1 LTR MaLR 0 365 162 2107 100 27 23 chr9 61514759 61515060 -56347567 + AluSq SINE Alu 1 302 -11 6316 200 74 72 chr9 61515136 61516828 -56345799 + pTR5 LTR ERV1 743 2438 0 1804 134 0 4 chr9 61516830 61517098 -56345529 + AluSx SINE Alu 27 293 -19 1572 201 3 3 chr9 61517154 61517447 -56345180 + AluJb SINE Alu 1 293 -19 22 0 0 0 chr9 61517710 61517732 -56344895 + AT_rich Low_complexity Low_complexity 1 22 0 2109 132 0 0 chr9 61517739 61518027 -56344600 + AluSx SINE Alu 1 288 -24 1656 150 0 8 chr9 61519467 61519727 -56342900 - AluJb SINE Alu -8 304 47 851 166 96 48 chr9 61519742 61519929 -56342698 - MER58A DNA MER1_type -28 196 1 1075 247 72 36 chr9 61520108 61520540 -56342087 - HAL1b LINE L1 -228 1120 669 1918 143 11 4 chr9 61520540 61520840 -56341787 - AluSx SINE Alu 0 302 1 1562 145 30 11 chr9 61520865 61521127 -56341500 - AluJb SINE Alu -27 285 19 417 253 136 13 chr9 61521184 61521338 -56341289 - HAL1b LINE L1 -695 653 481 350 331 101 15 chr9 61521430 61521723 -56340904 - HAL1b LINE L1 -758 590 251 1683 133 80 56 chr9 61521723 61522025 -56340602 - AluSx SINE Alu -3 309 1 350 331 101 15 chr9 61522025 61522136 -56340491 - HAL1b LINE L1 -1097 251 151 24 67 0 0 chr9 61522447 61522492 -56340135 + AT_rich Low_complexity Low_complexity 1 45 0 548 142 168 0 chr9 61522492 61522605 -56340022 - FLAM_C SINE Alu -1 132 1 2244 120 0 0 chr9 61523178 61523487 -56339140 + AluSq SINE Alu 1 309 -4 230 293 71 10 chr9 61524781 61524880 -56337747 - HAL1 LINE L1 -2048 459 355 1940 131 3 7 chr9 61524926 61525256 -56337371 - AluSx SINE Alu 0 329 1 321 188 118 47 chr9 61525266 61525351 -56337276 - HAL1 LINE L1 -2412 95 5 265 333 32 24 chr9 61525486 61525612 -56337015 - L2 LINE L2 -6 3266 3140 1645 146 149 3 chr9 61525692 61526001 -56336626 + MLT1A1 LTR MaLR 1 354 -11 233 197 28 56 chr9 61526007 61526078 -56336549 - L2 LINE L2 -199 3073 3005 211 311 126 19 chr9 61526741 61526844 -56335783 + L2 LINE L2 3181 3294 -19 5425 38 5 0 chr9 61527562 61528170 -56334457 - L1PA3 LINE L1 -3 6152 5542 2077 179 118 124 chr9 61528641 61529373 -56333254 - LTR8A LTR ERV1 0 727 1 1625 148 31 77 chr9 61529693 61529741 -56332886 - MLT2C1 LTR ERVL -71 326 277 2082 129 7 3 chr9 61529741 61530035 -56332592 + AluSx SINE Alu 1 295 -17 1625 148 31 77 chr9 61530035 61530311 -56332316 - MLT2C1 LTR ERVL -120 277 17 21 57 0 0 chr9 61530531 61530566 -56332061 + AT_rich Low_complexity Low_complexity 1 35 0 1945 93 23 0 chr9 61530647 61530905 -56331722 + AluSx SINE Alu 38 301 -11 452 384 13 13 chr9 61532388 61532617 -56330010 + MIR SINE MIR 28 256 -6 1833 157 28 0 chr9 61532652 61532939 -56329688 - AluJb SINE Alu -17 295 1 1675 224 97 93 chr9 61533019 61533084 -56329543 - L1ME3A LINE L1 -59 6111 6048 2065 132 7 3 chr9 61533084 61533380 -56329247 + AluSx SINE Alu 1 297 -15 1675 224 97 93 chr9 61533380 61533697 -56328930 - L1ME3A LINE L1 -122 6048 5734 985 219 0 0 chr9 61533697 61533861 -56328766 + FAM SINE Alu 1 164 -11 1675 224 97 93 chr9 61533861 61534177 -56328450 - L1ME3A LINE L1 -436 5734 5409 421 216 114 74 chr9 61534989 61535165 -56327462 - L1MC5 LINE L1 -35 7926 7744 418 198 26 0 chr9 61535205 61535321 -56327306 + CT-rich Low_complexity Low_complexity 3 121 0 1081 163 0 0 chr9 61535346 61535499 -56327128 - FRAM SINE Alu -30 146 1 2018 150 0 0 chr9 61535612 61535906 -56326721 - AluSx SINE Alu -18 294 1 1713 199 128 65 chr9 61535908 61535973 -56326654 - MLT1E1 LTR MaLR -2 652 593 1882 167 17 0 chr9 61535973 61536099 -56326528 + AluSx SINE Alu 1 123 -189 318 106 0 0 chr9 61536099 61536146 -56326481 + (CA)n Simple_repeat Simple_repeat 2 48 0 1882 167 17 0 chr9 61536146 61536313 -56326314 + AluSx SINE Alu 123 299 -13 1713 199 128 65 chr9 61536313 61536666 -56325961 - MLT1E1 LTR MaLR -61 593 188 1633 145 0 41 chr9 61536666 61536935 -56325692 - AluJo SINE Alu -15 297 40 1713 199 128 65 chr9 61536935 61537095 -56325532 - MLT1E1 LTR MaLR -466 188 39 1156 221 9 39 chr9 61537134 61537315 -56325312 - MER58A DNA MER1_type -2196 224 50 1854 132 0 4 chr9 61537315 61537581 -56325046 + AluJb SINE Alu 31 295 -17 1156 221 9 39 chr9 61537581 61537630 -56324997 - MER58A DNA MER1_type -2370 50 1 1853 139 0 63 chr9 61537775 61538092 -56324535 - AluSq SINE Alu -16 297 1 2245 97 0 35 chr9 61538176 61538487 -56324140 - AluSq SINE Alu -13 300 1 1363 234 55 41 chr9 61538825 61539261 -56323366 + L1ME3 LINE L1 5711 6152 -10 329 336 119 0 chr9 61539499 61539642 -56322985 + MER91A DNA MER1_type 14 173 -23 2270 96 13 7 chr9 61540572 61540875 -56321752 - AluSx SINE Alu -7 305 1 354 154 0 44 chr9 61541907 61541998 -56320629 + CT-rich Low_complexity Low_complexity 2 88 0 2292 157 11 14 chr9 61542331 61542695 -56319932 - MLT1A1 LTR MaLR 0 365 3 218 200 20 0 chr9 61543185 61543235 -56319392 + (CACAG)n Simple_repeat Simple_repeat 4 54 0 354 246 196 0 chr9 61543712 61543850 -56318777 + MIR SINE MIR 98 262 0 1012 200 70 51 chr9 61543891 61544097 -56318530 + MER5C DNA MER1_type 4 220 -104 1830 141 10 13 chr9 61544097 61544395 -56318232 + AluSx SINE Alu 1 297 -15 1012 200 70 51 chr9 61544395 61544503 -56318124 + MER5C DNA MER1_type 220 324 0 373 228 107 147 chr9 61545252 61545822 -56316805 + MLT1H LTR MaLR 3 549 0 2155 147 39 6 chr9 61545822 61546155 -56316472 + MER2 DNA MER2_type 1 344 0 22 0 0 0 chr9 61546332 61546354 -56316273 + AT_rich Low_complexity Low_complexity 1 22 0 2200 126 3 0 chr9 61547347 61547656 -56314971 - AluSx SINE Alu 0 312 3 29 70 0 0 chr9 61548023 61548080 -56314547 + AT_rich Low_complexity Low_complexity 1 57 0 827 246 27 23 chr9 61548248 61548508 -56314119 - L1MC4a LINE L1 -1882 5926 5666 296 65 11 185 chr9 61548753 61548845 -56313782 - MER5C DNA MER1_type 0 324 249 2254 119 0 3 chr9 61549337 61549640 -56312987 + AluSx SINE Alu 1 302 -10 404 76 0 15 chr9 61550342 61550408 -56312219 + (GA)n Simple_repeat Simple_repeat 2 66 0 323 311 74 0 chr9 61550450 61550640 -56311987 - AluSg/x SINE Alu 0 300 97 26 0 0 0 chr9 61550881 61550907 -56311720 + AT_rich Low_complexity Low_complexity 1 26 0 220 250 62 0 chr9 61551143 61551207 -56311420 - MIR SINE MIR -70 192 125 200 293 17 17 chr9 61551350 61551408 -56311219 - MIR SINE MIR -175 87 30 420 196 11 22 chr9 61552519 61552611 -56310016 - L1MA9 LINE L1 -681 5631 5541 2225 156 91 19 chr9 61552616 61552761 -56309866 + L1MA9 LINE L1 5625 5758 -533 195 42 0 0 chr9 61552761 61552785 -56309842 + (CA)n Simple_repeat Simple_repeat 2 25 0 2225 156 91 19 chr9 61552785 61553175 -56309452 + L1MA9 LINE L1 5758 6291 0 2321 113 3 0 chr9 61553212 61553523 -56309104 + AluSq SINE Alu 2 313 0 226 167 0 0 chr9 61553642 61553684 -56308943 + L2 LINE L2 3272 3313 0 365 279 0 0 chr9 61554206 61554285 -56308342 - MER5A DNA MER1_type -107 82 4 221 184 61 0 chr9 61554310 61554359 -56308268 - MER5B DNA MER1_type -14 164 113 759 158 33 0 chr9 61554359 61554479 -56308148 + FLAM_C SINE Alu 1 124 -9 213 121 0 0 chr9 61554494 61554527 -56308100 + (GGAA)n Simple_repeat Simple_repeat 4 36 0 611 250 16 0 chr9 61554532 61554660 -56307967 - MER5B DNA MER1_type -48 130 1 605 178 140 84 chr9 61554672 61554886 -56307741 - MER106A DNA MER1_type -4 232 7 6035 32 10 68 chr9 61555901 61556733 -56305894 - L1P LINE L1 -1643 4503 3721 2124 109 7 0 chr9 61556890 61557174 -56305453 - AluSx SINE Alu -25 287 2 729 168 0 42 chr9 61558818 61558937 -56303690 + FLAM_A SINE Alu 1 114 -19 300 102 0 0 chr9 61558938 61558987 -56303640 + (CA)n Simple_repeat Simple_repeat 2 50 0 591 265 26 48 chr9 61559075 61559264 -56303363 + MIR SINE MIR 16 200 -62 1784 151 0 7 chr9 61559950 61560222 -56302405 + AluJb SINE Alu 4 273 -39 900 157 133 43 chr9 61560456 61560666 -56301961 + MLT2B3 LTR ERVL 306 534 -20 296 77 62 0 chr9 61560686 61560751 -56301876 + (TCTA)n Simple_repeat Simple_repeat 4 72 0 239 140 0 88 chr9 61560768 61560825 -56301802 + MLT2C2 LTR ERVL 429 464 0 942 270 178 6 chr9 61561081 61561580 -56301047 + L2 LINE L2 2725 3309 -4 877 306 73 22 chr9 61561728 61562097 -56300530 + MLT1I LTR MaLR 1 388 -21 388 261 51 22 chr9 61562106 61562244 -56300383 - MIR SINE MIR -72 190 49 275 83 0 0 chr9 61562271 61562307 -56300320 - U2 snRNA snRNA -152 36 1 1709 146 6 59 chr9 61563322 61563643 -56298984 - AluJo SINE Alu -8 304 1 622 74 66 18 chr9 61564234 61564510 -56298117 + (TG)n Simple_repeat Simple_repeat 1 289 0 1356 227 152 17 chr9 61564843 61564953 -56297674 + MLT1C LTR MaLR 4 98 -369 2019 182 25 8 chr9 61564953 61565311 -56297316 + MLT1A1 LTR MaLR 1 364 -1 1356 227 152 17 chr9 61565311 61565609 -56297018 + MLT1C LTR MaLR 98 467 0 906 251 76 92 chr9 61565871 61566367 -56296260 + MLT1G LTR MaLR 1 502 -65 444 118 0 0 chr9 61566372 61566440 -56296187 + (TA)n Simple_repeat Simple_repeat 2 69 0 1420 178 56 7 chr9 61566443 61566712 -56295915 - AluJo SINE Alu -30 282 1 2177 121 0 10 chr9 61566909 61567215 -56295412 - AluSc SINE Alu -6 303 1 441 210 103 97 chr9 61568543 61568738 -56293889 - MIR SINE MIR -36 226 31 865 235 111 42 chr9 61568761 61569067 -56293560 - MER46C DNA MER2_type -3 335 9 243 0 0 0 chr9 61569952 61569979 -56292648 + (CA)n Simple_repeat Simple_repeat 2 28 0 * 312 27 0 0 chr9 61569978 61570015 -56292612 + (GA)n Simple_repeat Simple_repeat 2 38 0 2816 213 27 32 chr9 61570562 61571159 -56291468 + MER77 LTR ERV1 3 596 -9 681 258 154 32 chr9 61571158 61571527 -56291100 - MLT1J1 LTR MaLR -32 414 1 * 335 212 22 80 chr9 61571574 61571711 -56290916 - MER113 DNA MER1_type? -392 129 1 1971 116 7 58 chr9 61572869 61573179 -56289448 + AluSx SINE Alu 16 309 -3 23 0 0 0 chr9 61573272 61573295 -56289332 + AT_rich Low_complexity Low_complexity 1 23 0 264 374 40 0 chr9 61573702 61573876 -56288751 - LTR67 LTR ERVL -35 522 342 2339 190 54 5 chr9 61573902 61574308 -56288319 - MSTB LTR MaLR 0 426 1 468 340 14 0 chr9 61574406 61574553 -56288074 - LTR67 LTR ERVL -365 192 44 2689 234 51 33 chr9 61575029 61575678 -56286949 + MER97c DNA MER1_type? 24 689 -401 2337 98 3 0 chr9 61575678 61575984 -56286643 - AluSq SINE Alu -6 307 1 2689 234 51 33 chr9 61575984 61576059 -56286568 + MER97c DNA MER1_type? 689 761 -329 541 167 28 19 chr9 61576062 61576170 -56286457 - L1PA16 LINE L1 0 6166 6058 599 180 18 36 chr9 61576170 61576185 -56286442 + MER97a DNA MER1_type? 731 745 -149 1839 163 14 0 chr9 61576185 61576468 -56286159 - AluSx SINE Alu -23 289 3 599 180 18 36 chr9 61576468 61576608 -56286019 + MER97a DNA MER1_type? 745 885 -9 352 286 36 18 chr9 61576992 61577104 -56285523 - MIR SINE MIR -92 170 57 1140 144 6 0 chr9 61577841 61578015 -56284612 - AluSg/x SINE Alu 0 310 136 204 125 0 0 chr9 61578121 61578153 -56284474 + (TTTC)n Simple_repeat Simple_repeat 2 33 0 2405 97 0 0 chr9 61579812 61580120 -56282507 - AluSc SINE Alu -1 308 1 347 93 0 0 chr9 61580493 61580536 -56282091 + (TG)n Simple_repeat Simple_repeat 2 44 0 15081 45 1 16 chr9 61581402 61584016 -56278611 + L1PA5 LINE L1 3550 6151 -3 8056 189 40 49 chr9 61584021 61585878 -56276749 + L1MA3 LINE L1 3407 5280 -2444 6066 114 53 30 chr9 61585878 61588385 -56274242 + SVA Other Other 432 1386 0 8056 189 40 49 chr9 61588385 61589718 -56272909 + L1MA3 LINE L1 5280 6725 -999 2542 27 0 0 chr9 61589718 61590009 -56272618 + L1PA4 LINE L1 5860 6152 -3 8056 189 40 49 chr9 61590009 61591000 -56271627 + L1MA3 LINE L1 6725 7724 0 406 228 161 39 chr9 61591024 61591100 -56271527 + L1ME4a LINE L1 5835 5900 -221 249 108 0 0 chr9 61591100 61591137 -56271490 + (TG)n Simple_repeat Simple_repeat 1 37 0 406 228 161 39 chr9 61591137 61591300 -56271327 + L1ME4a LINE L1 5900 6109 -12 4903 76 44 0 chr9 61591300 61591932 -56270695 - PABL_A LTR ERV1 0 660 1 406 228 161 39 chr9 61591932 61591946 -56270681 + L1ME4a LINE L1 6109 6120 -1 426 283 43 22 chr9 61592340 61592478 -56270149 + MIR SINE MIR 26 166 -96 392 241 0 36 chr9 61594032 61594144 -56268483 + MIR SINE MIR 146 253 -9 1743 83 15 136 chr9 61595258 61595582 -56267045 + LTR12 LTR ERV1 1 285 -429 342 219 0 0 chr9 61595582 61595655 -56266972 + LTR30 LTR ERV1 552 624 -98 702 161 34 0 chr9 61595655 61595773 -56266854 + LTR12 LTR ERV1 359 480 -234 603 183 24 1 chr9 61595860 61595999 -56266628 + L1M4c LINE L1 1093 1350 -5022 601 188 18 9 chr9 61596286 61596398 -56266229 + MER45A DNA AcHobo 66 178 0 920 166 13 0 chr9 61596754 61596905 -56265722 - MER58B DNA MER1_type 0 341 189 343 189 44 128 chr9 61596955 61597135 -56265492 + LTR37B LTR ERV1 114 278 -190 249 214 0 0 chr9 61597186 61597242 -56265385 + (TA)n Simple_repeat Simple_repeat 1 56 0 372 212 83 40 chr9 61597246 61597370 -56265257 + LTR37B LTR ERV1 313 400 -26 1706 146 3 74 chr9 61597370 61597693 -56264934 - AluJo SINE Alu -7 305 6 1948 178 0 0 chr9 61598106 61598410 -56264217 + AluJb SINE Alu 2 305 -7 2018 104 41 0 chr9 61598996 61599289 -56263338 - AluSg SINE Alu 0 304 1 28 0 0 0 chr9 61599775 61599803 -56262824 + AT_rich Low_complexity Low_complexity 1 28 0 504 277 13 19 chr9 61601181 61601336 -56261291 + MLT1H LTR MaLR 21 174 -375 298 258 52 21 chr9 61601476 61601573 -56261054 + MLT1H LTR MaLR 434 533 -16 4007 137 53 20 chr9 61601675 61602371 -56260256 + LTR62 LTR ERVK 1 719 0 25 65 0 0 chr9 61602371 61602417 -56260210 + AT_rich Low_complexity Low_complexity 1 46 0 352 286 63 6 chr9 61602445 61602620 -56260007 - MIR SINE MIR 0 262 78 276 202 139 92 chr9 61603250 61603388 -56259239 + L1ME1 LINE L1 5935 6065 -267 1626 159 24 35 chr9 61603388 61603678 -56258949 + AluJo SINE Alu 1 287 -25 276 202 139 92 chr9 61603678 61603692 -56258935 + L1ME1 LINE L1 6065 6077 -255 2392 94 0 0 chr9 61603692 61603990 -56258637 + AluSq SINE Alu 1 298 -15 276 202 139 92 chr9 61603990 61604057 -56258570 + L1ME1 LINE L1 6077 6327 -5 14263 126 24 50 chr9 61604415 61605322 -56257305 - Tigger1 DNA MER2_type -37 2381 1452 2196 96 3 40 chr9 61605322 61605625 -56257002 + AluSx SINE Alu 1 292 -20 14263 126 24 50 chr9 61605625 61606965 -56255662 - Tigger1 DNA MER2_type -966 1452 124 429 178 0 0 chr9 61606965 61607038 -56255589 + FLAM_A SINE Alu 50 122 -20 14263 126 24 50 chr9 61607038 61607157 -56255470 - Tigger1 DNA MER2_type -2294 124 4 1457 187 246 2 chr9 61607218 61607624 -56255003 - MLT1D LTR MaLR 0 505 1 2844 113 19 7 chr9 61607818 61608241 -56254386 + MSTA LTR MaLR 1 428 0 200 302 120 62 chr9 61609924 61610182 -56252445 + L2 LINE L2 2960 3232 -81 953 283 68 23 chr9 61610187 61610572 -56252055 + MLT1I LTR MaLR 1 402 -7 2394 184 36 26 chr9 61610572 61611072 -56251555 - MLT1D LTR MaLR 0 505 1 255 61 0 0 chr9 61611222 61611255 -56251372 + (T)n Simple_repeat Simple_repeat 1 33 0 376 307 60 23 chr9 61611603 61611821 -56250806 + MIR SINE MIR 20 245 -17 297 291 102 8 chr9 61612060 61612187 -56250440 - MIR SINE MIR -6 256 118 1997 290 28 6 chr9 61613533 61614071 -56248556 + MLT1H1 LTR MaLR 6 555 0 192 308 0 0 chr9 61614570 61614622 -56248005 + MIR SINE MIR 211 262 0 414 0 0 0 chr9 61614634 61614680 -56247947 + (TG)n Simple_repeat Simple_repeat 2 47 0 1980 121 7 4 chr9 61614700 61614981 -56247646 - AluSx SINE Alu -11 301 20 231 301 133 35 chr9 61615197 61615340 -56247287 - MIR3 SINE MIR -48 160 4 2062 112 30 17 chr9 61615896 61616192 -56246435 + AluJb SINE Alu 1 300 -12 333 264 104 35 chr9 61616311 61616488 -56246139 - MLT1J2 LTR MaLR 0 428 269 906 269 64 10 chr9 61616831 61617236 -56245391 + L1ME1 LINE L1 4916 5342 -804 2504 80 0 6 chr9 61617244 61617558 -56245069 - AluSp SINE Alu -1 312 1 2188 97 0 36 chr9 61617576 61617737 -56244890 + L1PB2 LINE L1 5825 5966 -185 2267 98 3 0 chr9 61617737 61618032 -56244595 + AluSq SINE Alu 1 296 -17 2188 97 0 36 chr9 61618032 61618209 -56244418 + L1PB2 LINE L1 5966 6148 -3 2017 146 10 3 chr9 61618237 61618546 -56244081 + AluSx SINE Alu 1 311 -1 2813 247 29 25 chr9 61618555 61619378 -56243249 + L1ME1 LINE L1 5336 6161 -5 411 198 43 78 chr9 61619714 61619750 -56242877 - LTR33A LTR ERVL -8 515 479 1432 183 53 18 chr9 61619750 61620034 -56242593 - AluJo SINE Alu -18 294 1 411 198 43 78 chr9 61620034 61620113 -56242514 - LTR33A LTR ERVL -44 479 404 370 219 197 15 chr9 61620573 61620710 -56241917 + Charlie8 DNA MER1_type 92 253 -2164 274 365 51 0 chr9 61622407 61622544 -56240083 + MIR3 SINE MIR 42 185 -23 651 220 5 73 chr9 61623042 61623233 -56239394 - MER5B DNA MER1_type 0 178 1 2201 88 0 37 chr9 61623912 61624208 -56238419 + AluSg SINE Alu 14 298 -12 204 260 130 0 chr9 61624245 61624322 -56238305 - L2 LINE L2 -785 2529 2443 312 291 95 67 chr9 61624576 61624964 -56237663 + L2 LINE L2 2352 2750 -564 736 192 50 50 chr9 61625385 61625524 -56237103 - LTR8 LTR ERV1 -509 182 41 2546 73 3 0 chr9 61625524 61625827 -56236800 - AluSp SINE Alu -7 306 3 736 192 50 50 chr9 61625827 61625869 -56236758 - LTR8 LTR ERV1 -649 42 1 199 300 57 0 chr9 61625900 61625970 -56236657 + L3 LINE CR1 1497 1570 -7 30 59 0 0 chr9 61626197 61626248 -56236379 + AT_rich Low_complexity Low_complexity 1 51 0 859 148 0 0 chr9 61626249 61626371 -56236256 - AluJb SINE Alu -190 122 1 376 212 12 10 chr9 61626561 61626668 -56235959 + L1MC5 LINE L1 7832 8042 0 191 259 130 74 chr9 61626970 61627132 -56235495 - MER5A DNA MER1_type 0 189 19 229 226 0 19 chr9 61628235 61628288 -56234339 + L3b LINE CR1 1392 1443 -140 348 230 44 35 chr9 61628810 61628923 -56233704 - MIR3 SINE MIR -7 201 88 282 310 35 26 chr9 61628971 61629087 -56233540 + MIR3 SINE MIR 39 155 -53 2194 99 3 7 chr9 61629677 61629959 -56232668 + AluSx SINE Alu 1 281 -31 917 99 25 6 chr9 61629962 61630123 -56232504 + (GAAA)n Simple_repeat Simple_repeat 2 165 0 2195 101 0 0 chr9 61630132 61630408 -56232219 + AluSx SINE Alu 15 290 -22 1272 208 133 45 chr9 61630461 61630836 -56231791 - MER31A LTR ERV1 -76 409 2 2277 86 0 0 chr9 61631748 61632064 -56230563 + AluSg SINE Alu 1 316 0 206 302 48 8 chr9 61632256 61632382 -56230245 + L2 LINE L2 2481 2611 -703 251 323 11 21 chr9 61632439 61632532 -56230095 + MIR SINE MIR 160 251 -11 739 148 0 16 chr9 61632612 61632740 -56229887 + FLAM_C SINE Alu 2 127 -16 2335 99 3 7 chr9 61632764 61633068 -56229559 + AluSq SINE Alu 1 303 -10 423 297 38 34 chr9 61633407 61633643 -56228984 + LTR37B LTR ERV1 209 445 -23 4943 100 1 27 chr9 61633713 61633975 -56228652 + LTR8 LTR ERV1 1 268 -423 1960 124 19 25 chr9 61633975 61634289 -56228338 + AluSq SINE Alu 1 312 -1 4943 100 1 27 chr9 61634289 61634733 -56227894 + LTR8 LTR ERV1 268 689 -2 800 190 16 22 chr9 61634802 61634986 -56227641 - MER106A DNA MER1_type 0 236 54 1401 183 88 9 chr9 61635158 61635475 -56227152 + MER2 DNA MER2_type 1 342 -2 3400 152 64 21 chr9 61635675 61636300 -56226327 - LTR51 LTR ERV1 0 671 20 1765 180 7 0 chr9 61636407 61636707 -56225920 + AluJo SINE Alu 1 302 -10 183 42 0 0 chr9 61636839 61636863 -56225764 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1396 199 8 8 chr9 61636894 61637155 -56225472 + AluJb SINE Alu 26 286 -26 2321 111 7 0 chr9 61637187 61637494 -56225133 + AluSx SINE Alu 1 309 -3 337 121 0 17 chr9 61637620 61637678 -56224949 - LTR54 LTR ERV1 0 510 454 375 172 0 0 chr9 61637691 61637755 -56224872 - AluSc SINE Alu -105 194 131 * 1446 196 52 74 chr9 61637754 61638157 -56224470 - LTR54 LTR ERV1 -45 465 72 871 142 0 0 chr9 61638173 61638300 -56224327 - FLAM_C SINE Alu -11 132 6 468 174 0 23 chr9 61638303 61638389 -56224238 - LTR54 LTR ERV1 -426 84 1 2016 153 74 76 chr9 61638409 61638568 -56224059 - LTR49 LTR ERV1 -10 585 427 2307 119 0 0 chr9 61638568 61638878 -56223749 - AluSx SINE Alu -2 310 1 2016 153 74 76 chr9 61638878 61639189 -56223438 - LTR49 LTR ERV1 -168 427 116 23 0 0 0 chr9 61639315 61639338 -56223289 + AT_rich Low_complexity Low_complexity 1 23 0 2055 124 0 35 chr9 61639648 61639962 -56222665 + AluSx SINE Alu 1 303 -9 2115 137 0 9 chr9 61640436 61640751 -56221876 - AluSx SINE Alu 0 312 1 303 245 21 41 chr9 61641566 61641682 -56220945 - MIR SINE MIR -59 149 33 2609 126 15 15 chr9 61641805 61642209 -56220418 - MER65A LTR ERV1 -2 443 40 1348 19 0 0 chr9 61642358 61642512 -56220115 + L1PA2 LINE L1 5998 6151 -4 229 246 183 32 chr9 61642512 61642638 -56219989 - MIR SINE MIR -111 151 7 261 212 81 50 chr9 61642685 61642784 -56219843 - L1ME3A LINE L1 -73 6091 5990 2019 138 10 0 chr9 61642880 61643177 -56219450 + AluSx SINE Alu 1 300 -12 195 175 95 79 chr9 61643282 61643345 -56219282 - L2 LINE L2 -40 3273 3210 1156 88 14 0 chr9 61644017 61644165 -56218462 + AluSq/x SINE Alu 1 150 -163 1536 107 5 0 chr9 61644165 61644371 -56218256 + AluSq SINE Alu 100 306 -7 664 133 19 251 chr9 61644374 61644568 -56218059 + MER63 DNA MER1_type 8 104 -826 2038 120 0 28 chr9 61644568 61644894 -56217733 - AluSq SINE Alu 0 320 3 664 133 19 251 chr9 61644894 61645013 -56217614 + MER63 DNA MER1_type 104 249 -681 498 195 24 18 chr9 61645286 61645455 -56217172 + GA-rich Low_complexity Low_complexity 1 170 0 3122 167 82 18 chr9 61645462 61646074 -56216553 + L1MCa LINE L1 46 696 -5730 777 231 86 27 chr9 61646087 61646308 -56216319 - MSTD LTR MaLR -162 234 1 3580 222 79 5 chr9 61646311 61647235 -56215392 + L1M4 LINE L1 3371 4362 -1784 479 190 0 0 chr9 61647260 61647339 -56215288 + AluJ/FLAM SINE Alu 1 79 -233 1953 126 15 56 chr9 61647341 61647683 -56214944 + L1MC1 LINE L1 5634 5961 -372 993 128 13 0 chr9 61647685 61647834 -56214793 + L1MC1 LINE L1 6173 6323 -10 1856 174 0 0 chr9 61647835 61648123 -56214504 + AluJo SINE Alu 1 288 -24 316 273 67 73 chr9 61648300 61648450 -56214177 + MIR SINE MIR 65 213 -49 339 284 266 9 chr9 61648773 61649115 -56213512 + L2 LINE L2 2451 2880 -434 1801 95 0 0 chr9 61649299 61649531 -56213096 - AluY SINE Alu -79 232 1 2319 98 0 0 chr9 61649634 61649931 -56212696 - AluSg SINE Alu -13 297 1 405 0 0 0 chr9 61650304 61650349 -56212278 + (TG)n Simple_repeat Simple_repeat 2 46 0 189 328 109 8 chr9 61650373 61650492 -56212135 + MIR SINE MIR 24 154 -108 249 258 65 0 chr9 61651246 61651308 -56211319 + MER106A DNA MER1_type 7 72 -164 10759 169 20 2 chr9 61651411 61653166 -56209461 - L1M1 LINE L1 -5762 1803 17 545 302 33 80 chr9 61653177 61653727 -56208900 - L1ME LINE L1 -299 5822 5299 951 217 9 9 chr9 61653735 61653961 -56208666 - L1PA16 LINE L1 -16 6150 5925 387 0 0 0 chr9 61654142 61654185 -56208442 + (TG)n Simple_repeat Simple_repeat 2 44 0 1808 149 7 4 chr9 61654203 61654484 -56208143 - AluSx SINE Alu -11 301 20 231 301 133 35 chr9 61654700 61654843 -56207784 - MIR3 SINE MIR -48 160 4 2062 112 30 17 chr9 61655399 61655695 -56206932 + AluJb SINE Alu 1 300 -12 333 264 104 35 chr9 61655814 61655991 -56206636 - MLT1J2 LTR MaLR 0 428 269 906 269 64 10 chr9 61656334 61656739 -56205888 + L1M4 LINE L1 4916 5342 -804 2370 109 3 0 chr9 61656747 61657059 -56205568 - AluSq SINE Alu 0 313 1 592 253 55 84 chr9 61658121 61658358 -56204269 - MIR SINE MIR -21 241 12 1207 153 6 0 chr9 61658400 61658577 -56204050 + THE1B LTR MaLR 1 178 -186 12129 44 0 16 chr9 61658680 61660947 -56201680 + L1PA5 LINE L1 3874 6151 -3 1330 142 28 8 chr9 61660952 61661206 -56201421 + L1M1 LINE L1 3407 3665 -3900 246 268 119 37 chr9 61661437 61661680 -56200947 - HAL1b LINE L1 -497 851 589 202 187 27 40 chr9 61661718 61661793 -56200834 + (TTAA)n Simple_repeat Simple_repeat 1 74 0 22 0 0 0 chr9 61663205 61663227 -56199400 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr9 61665054 61665083 -56197544 + AT_rich Low_complexity Low_complexity 1 29 0 261 0 0 0 chr9 61665156 61665185 -56197442 + (TG)n Simple_repeat Simple_repeat 2 30 0 1372 92 29 10 chr9 61666672 61666878 -56195749 + L1MA8 LINE L1 6004 6213 -78 229 282 78 10 chr9 61667729 61667832 -56194795 + L1ME3A LINE L1 6052 6161 -9 1285 185 28 31 chr9 61668535 61668859 -56193768 - MER33 DNA MER1_type 0 324 2 203 255 0 0 chr9 61669318 61669365 -56193262 - MIR SINE MIR -99 163 117 183 217 72 14 chr9 61669460 61669529 -56193098 - MIR SINE MIR -72 136 64 187 312 21 32 chr9 61670282 61670375 -56192252 + MIR3 SINE MIR 113 204 -4 1348 196 18 28 chr9 61671018 61671344 -56191283 - MER33 DNA MER1_type 0 324 2 282 294 29 10 chr9 61673196 61673298 -56189329 + MIR SINE MIR 21 124 -84 1138 138 6 11 chr9 61673346 61673520 -56189107 + FRAM SINE Alu 4 176 0 468 272 21 147 chr9 61674090 61674369 -56188258 + MIR SINE MIR 15 258 -4 291 279 0 0 chr9 61674473 61674552 -56188075 + L2 LINE L2 3192 3270 -2 330 249 185 58 chr9 61674663 61674836 -56187791 - LTR33A LTR ERVL -4 519 325 1227 193 14 5 chr9 61675206 61675424 -56187203 + MER58A DNA MER1_type 5 224 0 309 223 85 0 chr9 61675434 61675528 -56187099 - MIR SINE MIR -72 190 89 1816 219 17 70 chr9 61676967 61677492 -56185135 + MLT1D LTR MaLR 9 505 0 1948 154 7 3 chr9 61678286 61678584 -56184043 + AluSq SINE Alu 1 299 -14 348 330 85 10 chr9 61680039 61680239 -56182388 + MIR SINE MIR 13 227 -35 874 179 47 37 chr9 61680239 61680570 -56182057 - MLT1D LTR MaLR 0 505 13 820 243 118 24 chr9 61681866 61682121 -56180506 - LTR16C LTR ERVL 0 491 213 561 310 64 79 chr9 61683307 61683649 -56178978 - L2 LINE L2 -13 3259 2923 738 209 0 14 chr9 61683649 61683788 -56178839 - MLT1E LTR MaLR -1 592 456 485 262 153 43 chr9 61684627 61685108 -56177519 - L1M4 LINE L1 -2772 3374 2750 1995 133 3 7 chr9 61685108 61685408 -56177219 + AluSx SINE Alu 1 299 -13 485 262 153 43 chr9 61685408 61685450 -56177177 - L1M4 LINE L1 -3396 2750 2714 517 314 24 60 chr9 61685625 61685873 -56176754 + L1MEd LINE L1 524 762 -5357 635 286 251 22 chr9 61685919 61686289 -56176338 - L2 LINE L2 -35 3278 2824 518 291 77 49 chr9 61686295 61687109 -56175518 + L1MEd LINE L1 844 1731 -4579 2611 261 110 84 chr9 61687498 61690682 -56171945 + L1MEd LINE L1 2105 5371 -758 440 292 184 5 chr9 61690712 61691083 -56171544 + L1MB8 LINE L1 5506 5947 -231 32 43 0 0 chr9 61691496 61691542 -56171085 + AT_rich Low_complexity Low_complexity 1 46 0 1121 203 23 14 chr9 61693034 61693251 -56169376 - MER20 DNA MER1_type 0 219 1 396 268 134 71 chr9 61693742 61694253 -56168374 - MLT1K LTR MaLR -6 582 104 1154 256 57 70 chr9 61694548 61695059 -56167568 + LTR33A LTR ERVL 4 507 -16 2401 83 3 0 chr9 61696571 61696872 -56165755 - AluSp SINE Alu -11 302 1 239 237 0 17 chr9 61700839 61700898 -56161729 - LTR67 LTR ERVL -9 548 491 246 262 36 12 chr9 61701291 61701375 -56161252 - LTR67 LTR ERVL -471 86 1 290 240 190 0 chr9 61701395 61701495 -56161132 + MER103 DNA DNA 2 120 -46 374 266 64 0 chr9 61702366 61702475 -56160152 - L2 LINE L2 0 3313 3198 548 353 55 29 chr9 61702500 61703108 -56159519 - L2 LINE L2 0 3272 2600 342 0 0 0 chr9 61703196 61703234 -56159393 + (GA)n Simple_repeat Simple_repeat 1 38 0 1204 358 55 28 chr9 61704359 61705249 -56157378 + L2 LINE L2 793 1706 -1608 996 140 140 13 chr9 61705383 61705657 -56156970 + MLT1A1 LTR MaLR 1 365 0 1656 309 67 47 chr9 61705729 61706764 -56155863 + L2 LINE L2 1989 3044 -269 225 211 28 28 chr9 61706760 61706831 -56155796 + MIR SINE MIR 142 212 -50 * 2483 75 3 7 chr9 61708759 61709067 -56153560 - AluY SINE Alu -4 307 1 189 143 32 32 chr9 61709074 61709137 -56153490 + CT-rich Low_complexity Low_complexity 1 63 0 284 299 46 66 chr9 61710312 61710509 -56152118 - MIR SINE MIR -15 247 55 373 321 79 6 chr9 61710618 61710783 -56151844 - MIR SINE MIR -81 181 5 241 204 74 0 chr9 61710812 61710866 -56151761 + L2 LINE L2 3208 3265 -7 878 181 66 0 chr9 61711148 61711330 -56151297 + AluJb SINE Alu 119 312 0 2399 192 40 4 chr9 61711473 61711947 -56150680 - L1MC3 LINE L1 0 7785 7295 2009 139 0 16 chr9 61712108 61712424 -56150203 - AluJb SINE Alu -1 311 1 258 229 0 0 chr9 61712591 61712661 -56149966 + T-rich Low_complexity Low_complexity 1 70 0 875 182 0 6 chr9 61712662 61712843 -56149784 + CT-rich Low_complexity Low_complexity 1 180 0 323 230 11 0 chr9 61712864 61712951 -56149676 + CT-rich Low_complexity Low_complexity 3 90 0 180 0 0 0 chr9 61713549 61713569 -56149058 + (TATG)n Simple_repeat Simple_repeat 3 22 0 302 91 18 0 chr9 61713759 61713814 -56148813 + (GA)n Simple_repeat Simple_repeat 1 56 0 272 135 0 19 chr9 61714509 61714561 -56148066 + (GAA)n Simple_repeat Simple_repeat 2 52 0 567 332 50 17 chr9 61714579 61714721 -56147906 - MIR SINE MIR -11 251 96 1522 160 135 28 chr9 61714721 61715046 -56147581 - MER46B DNA MER2_type 0 236 2 567 332 50 17 chr9 61715046 61715144 -56147483 - MIR SINE MIR -166 96 3 412 305 26 0 chr9 61715189 61715402 -56147225 + (TG)n Simple_repeat Simple_repeat 1 218 0 2434 110 40 35 chr9 61715726 61716099 -56146528 - THE1C LTR MaLR 0 375 1 1198 203 45 12 chr9 61716545 61716787 -56145840 + MER58 DNA MER1_type 4 253 -2167 231 147 0 0 chr9 61717069 61717103 -56145524 - MLT1A1 LTR MaLR 0 365 332 1565 246 18 0 chr9 61717140 61717477 -56145150 - MLT1A1 LTR MaLR -22 343 1 227 280 0 0 chr9 61717646 61717696 -56144931 + Charlie8 DNA MER1_type 178 227 -2190 719 256 86 102 chr9 61717772 61718205 -56144422 - MLT1J2 LTR MaLR -8 442 13 2164 235 53 41 chr9 61718511 61718679 -56143948 - MLT1G LTR MaLR -7 583 419 2244 95 13 7 chr9 61718679 61718984 -56143643 + AluY SINE Alu 3 309 -2 2164 235 53 41 chr9 61718984 61719382 -56143245 - MLT1G LTR MaLR -171 419 10 722 229 32 0 chr9 61719796 61719953 -56142674 + Charlie4 DNA MER1_type 13 174 -1787 236 100 0 0 chr9 61720014 61720044 -56142583 - U2 snRNA snRNA -158 30 1 389 226 36 0 chr9 61720048 61720132 -56142495 + Charlie4 DNA MER1_type 191 277 -1684 311 207 61 0 chr9 61720961 61721043 -56141584 - HAL1 LINE L1 -134 2373 2287 412 258 45 58 chr9 61721432 61721587 -56141040 - MIR SINE MIR -108 154 2 269 179 26 77 chr9 61721720 61721798 -56140829 - L1ME4a LINE L1 -89 6032 5959 736 285 83 43 chr9 61721842 61722548 -56140079 - L1MC4a LINE L1 -403 5759 5129 225 295 0 26 chr9 61722552 61722630 -56139997 + L2 LINE L2 2313 2388 -926 316 322 83 16 chr9 61725118 61725239 -56137388 + MER5A DNA MER1_type 54 182 -7 221 281 85 12 chr9 61726401 61726483 -56136144 + L2 LINE L2 3150 3237 -35 186 43 0 0 chr9 61726534 61726557 -56136070 + (ATG)n Simple_repeat Simple_repeat 3 25 0 280 316 0 0 chr9 61726849 61726925 -56135702 + CT-rich Low_complexity Low_complexity 4 79 0 348 332 74 49 chr9 61727088 61727332 -56135295 - MIR SINE MIR -10 252 3 180 111 0 0 chr9 61727763 61727790 -56134837 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 708 250 117 34 chr9 61728094 61728283 -56134344 + MLT1J LTR MaLR 226 445 -66 2039 119 3 39 chr9 61728283 61728593 -56134034 - AluSx SINE Alu -13 299 1 708 250 117 34 chr9 61728593 61728667 -56133960 + MLT1J LTR MaLR 445 511 0 668 245 55 84 chr9 61729655 61729892 -56132735 - MIR SINE MIR -21 241 12 2163 145 33 44 chr9 61729934 61730299 -56132328 + THE1B LTR MaLR 1 361 -3 372 22 0 0 chr9 61730300 61730345 -56132282 + (CA)n Simple_repeat Simple_repeat 1 45 0 433 323 30 0 chr9 61730496 61730629 -56131998 + MIR SINE MIR 76 212 -50 224 342 13 13 chr9 61731292 61731368 -56131259 - L2 LINE L2 0 3272 3197 27 29 0 0 chr9 61731381 61731415 -56131212 + AT_rich Low_complexity Low_complexity 1 34 0 532 276 16 104 chr9 61731700 61731950 -56130677 + MIR SINE MIR 34 261 -1 948 247 176 14 chr9 61732392 61732756 -56129871 - MLT1K LTR MaLR -5 583 161 1192 228 32 11 chr9 61733203 61733484 -56129143 + MLT2C1 LTR ERVL 4 290 -107 1902 154 97 6 chr9 61733524 61733843 -56128784 + MER7A DNA MER2_type 1 346 0 198 0 0 0 chr9 61733846 61733868 -56128759 + (CA)n Simple_repeat Simple_repeat 2 23 0 285 133 0 83 chr9 61733901 61733961 -56128666 + MLT2F LTR ERVL 464 661 -2 280 236 73 57 chr9 61734230 61734353 -56128274 - MIR SINE MIR -49 213 89 453 345 34 11 chr9 61734421 61734598 -56128029 + MER5A DNA MER1_type 7 187 -2 21127 47 6 0 chr9 61734797 61738119 -56124508 + L1PA5 LINE L1 2812 6153 -1 1268 45 32 0 chr9 61739297 61739451 -56123176 - L1PA7 LINE L1 -1 6153 5995 479 195 0 0 chr9 61739474 61739556 -56123071 - Tigger5 DNA MER2_type 0 2323 2242 358 237 40 0 chr9 61739583 61739659 -56122968 - Tigger5 DNA MER2_type -2244 79 1 876 206 56 0 chr9 61740668 61740848 -56121779 - MIR SINE MIR -55 207 18 369 250 35 9 chr9 61743379 61743495 -56119132 - L1ME4a LINE L1 -294 5827 5709 192 367 82 39 chr9 61743684 61743940 -56118687 - L2 LINE L2 -118 3154 2888 303 349 148 38 chr9 61744118 61744720 -56117907 - L2 LINE L2 -337 2977 2310 558 235 0 17 chr9 61745523 61745702 -56116925 + CT-rich Low_complexity Low_complexity 4 179 0 312 91 0 0 chr9 61745702 61745746 -56116881 + (TCTCC)n Simple_repeat Simple_repeat 1 44 0 912 156 13 13 chr9 61745746 61745900 -56116727 - AluJb SINE Alu -11 301 148 718 286 109 28 chr9 61746591 61746874 -56115753 + MLT1J2 LTR MaLR 15 320 -130 729 238 37 16 chr9 61747104 61747293 -56115334 + MIR SINE MIR 10 202 -60 931 255 37 5 chr9 61748734 61748950 -56113677 + MER58A DNA MER1_type 2 224 0 34 0 0 0 chr9 61749030 61749064 -56113563 + AT_rich Low_complexity Low_complexity 1 34 0 243 0 0 0 chr9 61749088 61749115 -56113512 + (CA)n Simple_repeat Simple_repeat 2 28 0 2467 107 45 25 chr9 61750576 61750932 -56111695 + THE1B LTR MaLR 2 364 0 1081 278 124 10 chr9 61750970 61751373 -56111254 + MLT1J2 LTR MaLR 2 450 0 1751 224 42 44 chr9 61751731 61752235 -56110392 - L1MD2 LINE L1 -2 6357 5855 2884 140 30 102 chr9 61752236 61752794 -56109833 - MLT2B1 LTR ERVL 0 520 3 9971 143 24 20 chr9 61752796 61753459 -56109168 - ERVL-B1 LTR ERVL -7 5757 5098 7738 52 12 0 chr9 61753459 61754540 -56108087 - L1PA5 LINE L1 0 6154 5070 9971 143 24 20 chr9 61754540 61755502 -56107125 - ERVL-B1 LTR ERVL -666 5098 4126 7727 169 17 16 chr9 61755534 61756845 -56105782 - ERVL-B1 LTR ERVL -1583 4181 2870 3202 106 39 27 chr9 61756849 61757360 -56105267 - L1MA8 LINE L1 -2 6289 5773 5223 123 12 23 chr9 61757373 61758208 -56104419 - L1MA5A LINE L1 -2 6295 5470 186 43 0 0 chr9 61758248 61758271 -56104356 + (TTAAA)n Simple_repeat Simple_repeat 4 26 0 2216 145 6 78 chr9 61758272 61758633 -56103994 - L1MA5A LINE L1 -1317 4829 4509 2066 140 6 13 chr9 61758633 61758947 -56103680 - AluSx SINE Alu 0 312 1 2216 145 6 78 chr9 61758947 61759062 -56103565 - L1MA5A LINE L1 -1637 4509 4387 3082 230 21 28 chr9 61759084 61760110 -56102517 - L1MD2 LINE L1 -419 5940 4922 670 258 98 40 chr9 61760321 61760546 -56102081 + Charlie8 DNA MER1_type 39 276 -2141 210 71 0 0 chr9 61761876 61761904 -56100723 + (TC)n Simple_repeat Simple_repeat 2 29 0 1971 139 7 0 chr9 61762411 61762705 -56099922 + AluSx SINE Alu 1 296 -16 218 54 0 27 chr9 61763493 61763530 -56099097 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 1495 162 33 29 chr9 61763543 61763815 -56098812 - AluJb SINE Alu -35 277 5 325 284 128 86 chr9 61764341 61764668 -56097959 + L2 LINE L2 2892 3232 -40 2024 122 0 3 chr9 61765462 61765750 -56096877 + AluSq SINE Alu 25 311 -2 519 293 74 52 chr9 61766654 61766883 -56095744 + L3 LINE CR1 510 743 -834 383 324 7 28 chr9 61766885 61767030 -56095597 + L3 LINE CR1 1276 1417 -160 198 71 0 0 chr9 61767031 61767059 -56095568 + (TTTAA)n Simple_repeat Simple_repeat 3 30 0 2066 112 11 0 chr9 61767059 61767335 -56095292 - AluSc SINE Alu -30 279 1 187 320 90 13 chr9 61767494 61767572 -56095055 + L3 LINE CR1 1442 1525 -52 518 220 206 14 chr9 61767580 61767794 -56094833 + MER112 DNA MER1_type 1 255 -1 2225 214 26 8 chr9 61767795 61768263 -56094364 + MER66B LTR ERV1 1 476 -10 590 263 86 53 chr9 61768538 61768781 -56093846 - MLT1J LTR MaLR -249 262 12 2241 105 10 0 chr9 61769864 61770168 -56092459 - AluSq SINE Alu -6 307 1 6972 145 40 24 chr9 61770230 61771101 -56091526 - Tigger3b DNA MER2_type -1807 1221 324 2126 102 7 13 chr9 61771101 61771404 -56091223 + AluY SINE Alu 11 311 0 6972 145 40 24 chr9 61771404 61771734 -56090893 - Tigger3b DNA MER2_type -2704 324 1 3134 204 40 34 chr9 61772158 61772719 -56089908 - L1ME1 LINE L1 -166 6081 5520 1762 91 0 4 chr9 61772719 61772983 -56089644 + AluY SINE Alu 54 316 0 3134 204 40 34 chr9 61772983 61773331 -56089296 - L1ME1 LINE L1 -727 5520 5176 1079 232 28 19 chr9 61773328 61773690 -56088937 - L1ME1 LINE L1 -1722 4493 4129 * 288 178 21 0 chr9 61773692 61773773 -56088854 - L1MA2 LINE L1 -289 6011 5928 2762 248 48 25 chr9 61773777 61775048 -56087579 - L1ME1 LINE L1 -2317 3898 23 669 251 38 47 chr9 61775048 61775283 -56087344 - MER112 DNA MER1_type -27 233 1 333 240 128 51 chr9 61775778 61775974 -56086653 - L2 LINE L2 0 3313 3103 207 69 0 0 chr9 61777931 61777960 -56084667 + (CA)n Simple_repeat Simple_repeat 1 29 0 367 152 174 54 chr9 61782594 61782686 -56079941 - L1MB2 LINE L1 0 6171 6069 246 208 0 0 chr9 61783782 61783835 -56078792 + T-rich Low_complexity Low_complexity 2 54 0 393 314 6 64 chr9 61784559 61784731 -56077896 + MIR3 SINE MIR 36 197 -11 294 322 141 7 chr9 61784986 61785135 -56077492 - MIR3 SINE MIR -6 202 34 328 55 455 0 chr9 61785222 61785277 -56077350 - MADE1 DNA Mariner 0 80 1 264 30 0 0 chr9 61785435 61785468 -56077159 + (TG)n Simple_repeat Simple_repeat 2 34 0 189 0 0 0 chr9 61787199 61787220 -56075407 + (CAAAA)n Simple_repeat Simple_repeat 3 23 0 1883 196 74 0 chr9 61787372 61787709 -56074918 + MLT1A1 LTR MaLR 1 362 -3 815 329 124 39 chr9 61789026 61789930 -56072697 + L2 LINE L2 1600 2580 -734 330 294 84 0 chr9 61789932 61790051 -56072576 - L2 LINE L2 -2 3270 3142 490 328 40 15 chr9 61790100 61790301 -56072326 + L2 LINE L2 2581 2786 -528 415 301 59 32 chr9 61791128 61791415 -56071212 - L1MC4a LINE L1 -82 6039 5746 641 178 96 7 chr9 61791439 61791574 -56071053 - MLT1A1 LTR MaLR -160 205 59 7040 78 12 2 chr9 61791660 61793021 -56069606 - L1PA8 LINE L1 0 6172 4813 567 288 22 63 chr9 61793024 61793295 -56069332 - L1MC4a LINE L1 -2205 5603 5344 329 343 83 45 chr9 61793413 61793833 -56068794 - L1MC4a LINE L1 -944 5202 4767 418 306 52 89 chr9 61794190 61794461 -56068166 + L2 LINE L2 2970 3230 -42 827 167 0 8 chr9 61795568 61795700 -56066927 - AluJb SINE Alu -179 133 3 824 290 121 53 chr9 61796356 61796753 -56065874 - MER115 DNA AcHobo -237 456 33 551 256 79 0 chr9 61797422 61797586 -56065041 + MIR SINE MIR 66 242 -20 1461 166 4 12 chr9 61798098 61798351 -56064276 - L1MB3 LINE L1 -7 6176 5926 1378 91 0 50 chr9 61799029 61799228 -56063399 + AluY SINE Alu 113 301 -10 26 30 0 0 chr9 61799461 61799494 -56063133 + AT_rich Low_complexity Low_complexity 1 33 0 2166 114 13 0 chr9 61800949 61801255 -56061372 - AluSx SINE Alu 0 312 3 413 311 97 20 chr9 61801505 61801701 -56060926 - Charlie8 DNA MER1_type -2206 211 1 183 281 78 0 chr9 61802055 61802119 -56060508 - MIR SINE MIR -95 113 45 495 256 94 0 chr9 61802174 61802291 -56060336 - MIR SINE MIR -74 188 61 438 330 45 17 chr9 61802605 61802781 -56059846 + MIR SINE MIR 3 183 -79 184 77 51 0 chr9 61803266 61803305 -56059322 + (TCTA)n Simple_repeat Simple_repeat 1 41 0 914 148 11 77 chr9 61803383 61803565 -56059062 + AluSg/x SINE Alu 131 300 -10 221 95 0 24 chr9 61803583 61803625 -56059002 + (TCTA)n Simple_repeat Simple_repeat 4 44 0 27 29 0 0 chr9 61804228 61804262 -56058365 + AT_rich Low_complexity Low_complexity 1 34 0 1777 161 21 4 chr9 61804516 61804796 -56057831 - AluJb SINE Alu -27 285 1 298 288 0 0 chr9 61806399 61806472 -56056155 + CT-rich Low_complexity Low_complexity 2 74 0 186 43 0 0 chr9 61806620 61806643 -56055984 + (TG)n Simple_repeat Simple_repeat 2 24 0 909 270 47 41 chr9 61806910 61807387 -56055240 - L1MB3 LINE L1 -395 5769 5293 2396 81 0 0 chr9 61807530 61807827 -56054800 - AluY SINE Alu -14 297 1 204 137 20 39 chr9 61808217 61808268 -56054359 + T-rich Low_complexity Low_complexity 5 54 0 24 0 0 0 chr9 61809097 61809121 -56053506 + AT_rich Low_complexity Low_complexity 1 24 0 324 70 0 0 chr9 61809392 61809435 -56053192 + (TCCA)n Simple_repeat Simple_repeat 2 44 0 193 319 89 44 chr9 61809436 61809571 -56053056 - L2 LINE L2 -24 3289 3149 635 313 70 66 chr9 61809687 61810156 -56052471 - MLT1K LTR MaLR -108 480 10 238 265 162 17 chr9 61811836 61811953 -56050674 - MIR SINE MIR -65 143 19 2422 76 7 0 chr9 61812714 61813018 -56049609 - AluY SINE Alu -5 306 1 2307 109 0 3 chr9 61814272 61814583 -56048044 - AluSx SINE Alu -2 310 1 2407 74 6 10 chr9 61815016 61815327 -56047300 - AluY SINE Alu -1 310 1 190 395 73 8 chr9 61817547 61817671 -56044956 - L2 LINE L2 -4 3268 3137 432 0 0 0 chr9 61818458 61818506 -56044121 + (TG)n Simple_repeat Simple_repeat 1 48 0 212 209 19 124 chr9 61818886 61818991 -56043636 + L2 LINE L2 3179 3272 0 191 122 0 49 chr9 61819522 61819563 -56043064 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 237 132 0 0 chr9 61819564 61819602 -56043025 + (TCCA)n Simple_repeat Simple_repeat 3 40 0 291 325 32 48 chr9 61821246 61821531 -56041096 - L1MC4a LINE L1 -413 5757 5604 252 250 106 10 chr9 61821575 61821773 -56040854 - L1MC4a LINE L1 -673 5493 5270 822 293 96 44 chr9 61822024 61822670 -56039957 - L1MEd LINE L1 -758 1732 967 183 371 14 14 chr9 61823593 61823663 -56038964 + L2 LINE L2 3203 3272 0 28 48 0 0 chr9 61824397 61824439 -56038188 + AT_rich Low_complexity Low_complexity 1 42 0 518 303 84 0 chr9 61826054 61826232 -56036395 + MIR SINE MIR 70 262 0 452 250 0 0 chr9 61826369 61826473 -56036154 + MER103 DNA DNA 11 114 -52 476 165 0 10 chr9 61826489 61826586 -56036041 + CT-rich Low_complexity Low_complexity 2 97 0 287 267 0 0 chr9 61826783 61826843 -56035784 + MER5A DNA MER1_type 50 109 -80 255 366 107 10 chr9 61827673 61827878 -56034749 + MIR SINE MIR 36 260 -2 1974 149 7 3 chr9 61828240 61828542 -56034085 + AluSx SINE Alu 1 303 -9 399 293 19 32 chr9 61828547 61828704 -56033923 + HAL1 LINE L1 127 281 -2226 1026 266 105 36 chr9 61828758 61829487 -56033140 + HAL1 LINE L1 407 1226 -1281 412 205 24 24 chr9 61829487 61829614 -56033013 + HsTC2 DNA Tc2 1769 1895 -3 2221 101 0 3 chr9 61829684 61829980 -56032647 - AluY SINE Alu -16 295 1 448 220 39 28 chr9 61830112 61830294 -56032333 + HAL1 LINE L1 2256 2439 -68 216 0 0 0 chr9 61830665 61830689 -56031938 + (T)n Simple_repeat Simple_repeat 1 24 0 371 82 55 0 chr9 61834128 61834201 -56028426 + (TA)n Simple_repeat Simple_repeat 2 78 0 22 0 0 0 chr9 61834683 61834705 -56027922 + AT_rich Low_complexity Low_complexity 1 22 0 2189 124 0 0 chr9 61834710 61835016 -56027611 + AluSx SINE Alu 1 306 -6 439 311 78 11 chr9 61835134 61835314 -56027313 + MIR3 SINE MIR 8 199 -9 371 272 44 60 chr9 61836539 61836853 -56025774 - MLT1H LTR MaLR -35 374 59 867 175 35 10 chr9 61838028 61838228 -56024399 - L1MD3 LINE L1 0 7995 7791 23 33 0 0 chr9 61838545 61838575 -56024052 + AT_rich Low_complexity Low_complexity 1 30 0 2768 10 0 10 chr9 61838964 61839277 -56023350 + AluY SINE Alu 1 310 -1 225 0 0 0 chr9 61839289 61839314 -56023313 + (A)n Simple_repeat Simple_repeat 1 25 0 2003 134 3 17 chr9 61839661 61839960 -56022667 + AluJb SINE Alu 4 298 -14 361 250 5 149 chr9 61840776 61840984 -56021643 - MER5B DNA MER1_type 0 178 1 180 362 7 65 chr9 61842504 61842642 -56019985 + MIR SINE MIR 13 142 -120 180 200 20 80 chr9 61842724 61842774 -56019853 + L2 LINE L2 3203 3249 -23 2564 111 11 0 chr9 61843003 61843363 -56019264 + THE1B LTR MaLR 1 364 0 415 188 10 10 chr9 61843621 61843717 -56018910 + FLAM_A SINE Alu 45 140 -2 484 290 161 7 chr9 61843788 61843943 -56018684 - MER5A DNA MER1_type 0 189 11 855 197 17 6 chr9 61846148 61846326 -56016301 - L1PA16 LINE L1 -5 6161 5982 225 0 0 0 chr9 61847536 61847561 -56015066 + (TTAAA)n Simple_repeat Simple_repeat 4 28 0 2081 139 0 0 chr9 61847561 61847856 -56014771 - AluSx SINE Alu -17 295 1 463 261 13 39 chr9 61848366 61848519 -56014108 - MER115 DNA AcHobo -41 652 504 208 262 0 0 chr9 61848972 61849014 -56013613 + MER91C DNA MER1_type 1 42 -154 426 312 32 0 chr9 61849081 61849206 -56013421 + MER91C DNA MER1_type 12 140 0 372 305 45 13 chr9 61850824 61850978 -56011649 - MLT1L LTR MaLR -81 534 376 2383 103 0 0 chr9 61851294 61851605 -56011022 - AluSx SINE Alu -1 311 1 30 59 0 0 chr9 61851831 61851882 -56010745 + AT_rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr9 61853897 61853918 -56008709 + AT_rich Low_complexity Low_complexity 1 21 0 227 353 53 0 chr9 61854430 61854580 -56008047 + L2 LINE L2 2431 2588 -726 1583 209 25 0 chr9 61854582 61854907 -56007720 + MER58B DNA MER1_type 1 333 -8 540 263 104 48 chr9 61854915 61855269 -56007358 + L2 LINE L2 2601 2974 -340 421 271 35 54 chr9 61855317 61855520 -56007107 + L2 LINE L2 3108 3306 -7 215 300 29 0 chr9 61855697 61855767 -56006860 + (CATG)n Simple_repeat Simple_repeat 2 73 0 2372 78 0 13 chr9 61855978 61856285 -56006342 - AluY SINE Alu -8 303 1 192 200 0 0 chr9 61856649 61856699 -56005928 + (CCAA)n Simple_repeat Simple_repeat 2 51 0 215 304 14 29 chr9 61857133 61857202 -56005425 + MIR SINE MIR 78 145 -117 2317 83 17 0 chr9 61857455 61857745 -56004882 + AluSp SINE Alu 1 295 -18 236 325 92 25 chr9 61857984 61858104 -56004523 + MIR SINE MIR 6 133 -129 603 322 88 0 chr9 61858110 61858349 -56004278 - MIR SINE MIR -1 261 2 649 270 95 49 chr9 61858368 61858587 -56004040 - MLT1I LTR MaLR 0 409 163 974 167 88 15 chr9 61858587 61858791 -56003836 - MER20 DNA MER1_type 0 219 1 649 270 95 49 chr9 61858791 61858960 -56003667 - MLT1I LTR MaLR -246 163 3 970 171 31 21 chr9 61859060 61859253 -56003374 + MER58A DNA MER1_type 30 224 0 263 210 12 25 chr9 61859720 61859801 -56002826 - L1MC5 LINE L1 -48 7913 7834 1626 200 4 7 chr9 61859802 61860082 -56002545 + AluJb SINE Alu 1 279 -33 180 0 0 0 chr9 61860082 61860102 -56002525 + (CA)n Simple_repeat Simple_repeat 1 20 0 197 180 20 0 chr9 61860139 61860189 -56002438 + CT-rich Low_complexity Low_complexity 2 52 0 406 228 71 55 chr9 61860264 61860391 -56002236 + MIR SINE MIR 123 251 -11 192 125 0 0 chr9 61860402 61860434 -56002193 + (CAT)n Simple_repeat Simple_repeat 2 33 0 651 267 25 0 chr9 61861817 61861978 -56000649 - MER5A DNA MER1_type -2 187 23 240 281 135 0 chr9 61863781 61863877 -55998750 + L2 LINE L2 3189 3297 -16 252 0 0 0 chr9 61864030 61864058 -55998569 + (T)n Simple_repeat Simple_repeat 1 28 0 926 264 19 0 chr9 61866008 61866224 -55996403 + MIR SINE MIR 32 251 -11 329 294 110 15 chr9 61866372 61866508 -55996119 - L1ME LINE L1 -491 5630 5482 424 277 102 40 chr9 61866584 61866887 -55995740 - L1ME LINE L1 -834 5312 4991 2229 92 3 0 chr9 61866889 61867195 -55995432 - AluSp SINE Alu 0 307 1 206 320 8 23 chr9 61868230 61868358 -55994269 + T-rich Low_complexity Low_complexity 5 130 0 429 329 67 7 chr9 61868637 61868786 -55993841 + MIR SINE MIR 36 193 -69 2371 120 11 22 chr9 61870365 61870731 -55991896 + THE1B LTR MaLR 1 362 -2 478 254 43 50 chr9 61872106 61872562 -55990065 - L1MC4 LINE L1 -177 7865 7312 * 553 263 79 40 chr9 61872547 61872927 -55989700 - L1MC4 LINE L1 -547 7495 7101 21 0 0 0 chr9 61873081 61873102 -55989525 + AT_rich Low_complexity Low_complexity 1 21 0 5299 85 20 0 chr9 61873109 61873860 -55988767 + L1MA1 LINE L1 5537 6302 0 460 243 79 34 chr9 61873932 61874109 -55988518 - MIR3 SINE MIR -6 202 18 26 30 0 0 chr9 61874399 61874432 -55988195 + AT_rich Low_complexity Low_complexity 1 33 0 468 293 121 36 chr9 61874444 61874833 -55987794 - L2 LINE L2 -5 3308 2887 185 0 40 0 chr9 61874877 61874902 -55987725 + (TTG)n Simple_repeat Simple_repeat 2 27 0 346 155 58 29 chr9 61875153 61875327 -55987300 + (CA)n Simple_repeat Simple_repeat 2 180 0 1488 218 37 29 chr9 61877206 61877615 -55985012 - MER31B LTR ERV1 -53 413 2 408 20 0 0 chr9 61878658 61878707 -55983920 + (CA)n Simple_repeat Simple_repeat 2 50 0 564 247 116 5 chr9 61878859 61879049 -55983578 + LTR16A1 LTR ERVL 247 457 0 387 289 19 0 chr9 61879280 61879415 -55983212 - MIR SINE MIR -67 141 2 378 302 9 9 chr9 61880123 61880239 -55982388 + L2 LINE L2 2945 3060 -212 1615 147 31 16 chr9 61880763 61881021 -55981606 - AluSx SINE Alu -19 293 32 300 254 192 8 chr9 61881740 61881870 -55980757 - L2 LINE L2 0 3313 3160 388 318 39 13 chr9 61882324 61882478 -55980149 - MIR SINE MIR -17 245 88 336 311 87 38 chr9 61882893 61883076 -55979551 - MIR SINE MIR -52 210 19 293 245 28 57 chr9 61883743 61883849 -55978778 - MIR SINE MIR -89 119 17 549 238 219 0 chr9 61884272 61884423 -55978204 + MER5A DNA MER1_type 6 189 0 210 118 0 0 chr9 61884634 61884668 -55977959 + (TAGA)n Simple_repeat Simple_repeat 1 34 0 23 0 0 0 chr9 61884671 61884694 -55977933 + AT_rich Low_complexity Low_complexity 1 23 0 2279 128 0 0 chr9 61884714 61885026 -55977601 - AluSx SINE Alu 0 312 1 2125 217 50 7 chr9 61885042 61885480 -55977147 - LTR40b LTR ERVL 0 462 6 254 368 57 0 chr9 61885911 61886017 -55976610 + L3 LINE CR1 1410 1521 -56 381 294 0 37 chr9 61886086 61886195 -55976432 + MER63 DNA MER1_type 1 731 -105 240 382 102 5 chr9 61886283 61886469 -55976158 + L3b LINE CR1 1377 1580 -3 1665 190 0 3 chr9 61886489 61886789 -55975838 + AluJb SINE Alu 6 304 -8 1308 201 0 0 chr9 61888799 61889018 -55973609 + MER58A DNA MER1_type 6 224 0 300 83 0 0 chr9 61890660 61890708 -55971919 + (CA)n Simple_repeat Simple_repeat 2 49 0 428 301 38 0 chr9 61891937 61892070 -55970557 + MARNA DNA Mariner 244 381 -205 274 214 12 36 chr9 61892641 61892725 -55969902 + MARNA DNA Mariner 393 474 -112 301 269 27 118 chr9 61892741 61892823 -55969804 + MIR SINE MIR 35 92 -170 1082 135 81 0 chr9 61892823 61893008 -55969619 - L1MA5A LINE L1 -3 6294 6095 301 269 27 118 chr9 61893008 61893111 -55969516 + MIR SINE MIR 92 203 -59 435 280 140 47 chr9 61894839 61895050 -55967577 - MIR SINE MIR 0 262 33 22 0 0 0 chr9 61895061 61895083 -55967544 + AT_rich Low_complexity Low_complexity 1 22 0 2212 93 0 0 chr9 61895634 61895962 -55966665 + AluSq SINE Alu 5 332 0 499 235 18 65 chr9 61896270 61896440 -55966187 + MIR SINE MIR 73 234 -28 867 226 26 35 chr9 61896456 61896686 -55965941 + MIR SINE MIR 7 234 -28 200 339 110 16 chr9 61898131 61898258 -55964369 - MIR3 SINE MIR -16 192 54 379 247 54 48 chr9 61901160 61901188 -55961439 - MIR SINE MIR -2 260 234 365 225 0 25 chr9 61901188 61901268 -55961359 - MER116 DNA Mariner -2 78 1 379 247 54 48 chr9 61901268 61901425 -55961202 - MIR SINE MIR -28 234 74 225 132 0 0 chr9 61901590 61901628 -55960999 + (CAT)n Simple_repeat Simple_repeat 1 38 0 1013 236 57 5 chr9 61902391 61902603 -55960024 + MER58A DNA MER1_type 1 223 -1 266 270 230 7 chr9 61903106 61903258 -55959369 + MIR SINE MIR 74 259 -3 586 273 67 79 chr9 61904982 61905437 -55957190 - MLT1J LTR MaLR 0 511 23 937 248 22 14 chr9 61906108 61906330 -55956297 + MER58A DNA MER1_type 1 224 0 645 3 98 33 chr9 61906460 61906773 -55955854 + (TA)n Simple_repeat Simple_repeat 1 333 0 209 167 0 37 chr9 61906776 61906830 -55955797 + (TTA)n Simple_repeat Simple_repeat 1 52 0 2487 143 14 14 chr9 61906893 61907256 -55955371 - MLT1A1 LTR MaLR 0 365 3 288 309 0 71 chr9 61907387 61907513 -55955114 + MIR3 SINE MIR 59 175 -33 677 227 167 0 chr9 61907754 61907922 -55954705 - MIR SINE MIR -3 259 74 27 49 0 0 chr9 61908782 61908823 -55953804 + AT_rich Low_complexity Low_complexity 1 41 0 2142 107 10 3 chr9 61909081 61909380 -55953247 - AluSx SINE Alu -11 301 1 278 314 21 36 chr9 61910035 61910175 -55952452 - MIR SINE MIR -110 152 15 1891 203 130 0 chr9 61910285 61910655 -55951972 + MER47B DNA MER2_type 1 418 0 23 0 0 0 chr9 61911019 61911042 -55951585 + AT_rich Low_complexity Low_complexity 1 23 0 3023 131 19 0 chr9 61914509 61914929 -55947698 + MSTC LTR MaLR 1 428 0 283 254 110 51 chr9 61915427 61915545 -55947082 + MIR SINE MIR 18 142 -66 188 366 0 0 chr9 61918014 61918096 -55944531 + MIR SINE MIR 154 235 -27 201 88 73 15 chr9 61918277 61918345 -55944282 + (TA)n Simple_repeat Simple_repeat 1 72 0 2288 119 0 0 chr9 61918479 61918789 -55943838 + AluSx SINE Alu 1 310 -2 463 101 145 0 chr9 61918981 61919050 -55943577 - MADE1 DNA Mariner 0 80 2 216 0 0 0 chr9 61920155 61920179 -55942448 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 207 167 0 0 chr9 61920195 61920231 -55942396 + GA-rich Low_complexity Low_complexity 2 37 0 207 0 0 0 chr9 61920784 61920807 -55941820 + (CACCC)n Simple_repeat Simple_repeat 3 25 0 21 0 0 0 chr9 61920927 61920948 -55941679 + AT_rich Low_complexity Low_complexity 1 21 0 673 237 118 5 chr9 61922105 61922316 -55940311 - Charlie8 DNA MER1_type -2182 235 1 268 317 0 29 chr9 61923518 61923622 -55939005 - L3b LINE CR1 -194 1389 1289 22 0 0 0 chr9 61924474 61924496 -55938131 + AT_rich Low_complexity Low_complexity 1 22 0 2352 116 0 0 chr9 61925378 61925688 -55936939 + AluSg SINE Alu 1 310 0 668 261 15 65 chr9 61925816 61926015 -55936612 + MIR SINE MIR 40 228 -34 481 340 19 0 chr9 61926971 61927133 -55935494 - MIR SINE MIR -76 186 22 314 219 24 24 chr9 61927158 61927240 -55935387 + MER96 DNA MER1_type? 3 84 -91 341 267 136 38 chr9 61928465 61928832 -55933795 + LTR33 LTR ERVL 111 513 -8 799 184 5 102 chr9 61928923 61929037 -55933590 - Tigger2 DNA MER2_type -1 2717 2628 2218 128 0 0 chr9 61929037 61929349 -55933278 - AluSx SINE Alu 0 312 1 799 184 5 102 chr9 61929349 61929430 -55933197 - Tigger2 DNA MER2_type -90 2628 2541 * 1265 155 5 0 chr9 61929404 61929611 -55933016 - Tigger2 DNA MER2_type -2510 208 1 208 216 0 68 chr9 61929978 61930052 -55932575 + T-rich Low_complexity Low_complexity 2 70 0 234 0 0 0 chr9 61930200 61930226 -55932401 + (CA)n Simple_repeat Simple_repeat 2 27 0 404 67 17 0 chr9 61930679 61930739 -55931888 + (GA)n Simple_repeat Simple_repeat 2 62 0 836 289 73 38 chr9 61931343 61931768 -55930859 - LTR16B LTR ERVL -13 451 12 187 171 29 0 chr9 61932380 61932415 -55930212 - MIR SINE MIR -6 256 221 604 251 65 20 chr9 61932479 61932678 -55929949 - Charlie8 DNA MER1_type -2161 256 49 693 258 112 37 chr9 61932777 61933045 -55929582 - LTR16A1 LTR ERVL 0 457 170 235 234 65 75 chr9 61934355 61934462 -55928165 + MIR3 SINE MIR 60 165 -43 1195 267 96 22 chr9 61934995 61935411 -55927216 - MLT1C LTR MaLR -15 452 6 356 253 147 47 chr9 61935444 61935634 -55926993 + MIR SINE MIR 6 214 -48 309 270 90 0 chr9 61936188 61936299 -55926328 - L2 LINE L2 0 3313 3193 755 237 42 33 chr9 61936306 61936521 -55926106 - Charlie8 DNA MER1_type -2200 217 1 496 247 84 88 chr9 61937664 61937865 -55924762 - MER102b DNA MER1_type -1087 341 141 2199 128 0 3 chr9 61937865 61938178 -55924449 - AluSx SINE Alu 0 312 1 496 247 84 88 chr9 61938178 61938237 -55924390 - MER102b DNA MER1_type -1287 141 80 221 0 35 0 chr9 61938237 61938266 -55924361 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 496 247 84 88 chr9 61938266 61938312 -55924315 - MER102b DNA MER1_type -1348 80 35 378 173 0 0 chr9 61939368 61939443 -55923184 + (TG)n Simple_repeat Simple_repeat 1 75 0 783 317 74 10 chr9 61939810 61940214 -55922413 - L1ME4a LINE L1 -201 5920 5491 851 289 18 5 chr9 61940389 61940607 -55922020 - MIR SINE MIR -22 240 20 229 155 35 17 chr9 61941316 61941374 -55921253 - L2 LINE L2 -220 3052 2994 218 308 287 7 chr9 61941911 61941972 -55920655 + MER5A DNA MER1_type 7 50 -139 243 0 0 0 chr9 61941972 61941999 -55920628 + (TGG)n Simple_repeat Simple_repeat 1 27 0 218 308 287 7 chr9 61941999 61942080 -55920547 + MER5A DNA MER1_type 50 189 0 740 258 0 11 chr9 61942088 61942266 -55920361 + MER5B DNA MER1_type 2 177 -1 415 121 0 36 chr9 61942314 61942397 -55920230 + (GGAA)n Simple_repeat Simple_repeat 3 82 0 2800 26 0 0 chr9 61942573 61942880 -55919747 + AluY SINE Alu 1 307 -4 245 228 7 183 chr9 61943168 61943221 -55919406 + MIR SINE MIR 29 42 -166 1980 101 0 14 chr9 61943221 61943498 -55919129 - AluSc SINE Alu 0 309 37 245 228 7 183 chr9 61943498 61943590 -55919037 + MIR SINE MIR 42 149 -59 183 80 0 0 chr9 61943970 61943995 -55918632 + (GGAA)n Simple_repeat Simple_repeat 2 26 0 405 182 18 9 chr9 61944014 61944124 -55918503 + GA-rich Low_complexity Low_complexity 3 113 0 551 195 138 0 chr9 61944285 61944408 -55918219 + MER5B DNA MER1_type 33 172 -6 745 145 126 0 chr9 61944634 61944793 -55917834 + MER53 DNA DNA 2 180 -9 773 218 67 0 chr9 61945233 61945398 -55917229 + MER45A DNA AcHobo 1 176 -2 303 49 0 0 chr9 61945996 61946037 -55916590 + (CAA)n Simple_repeat Simple_repeat 2 42 0 758 263 115 32 chr9 61947092 61947404 -55915223 - MER46C DNA MER2_type 0 338 1 470 56 0 14 chr9 61947412 61947483 -55915144 + (TATAA)n Simple_repeat Simple_repeat 1 70 0 338 242 0 0 chr9 61947507 61947573 -55915054 + L2 LINE L2 3246 3311 -2 398 276 40 59 chr9 61947639 61947791 -55914836 - MIR SINE MIR -77 185 37 661 280 86 26 chr9 61947791 61948023 -55914604 + MIR SINE MIR 11 256 -6 476 290 46 27 chr9 61948226 61948485 -55914142 + L1M4 LINE L1 3923 4186 -1960 355 127 63 0 chr9 61949015 61949078 -55913549 + L1ME4a LINE L1 6021 6087 -34 237 292 14 14 chr9 61949827 61949899 -55912728 + L2 LINE L2 3197 3268 -4 186 270 0 0 chr9 61950461 61950524 -55912103 + CT-rich Low_complexity Low_complexity 2 64 0 213 39 0 0 chr9 61950740 61950766 -55911861 + (T)n Simple_repeat Simple_repeat 1 26 0 1973 274 119 47 chr9 61950837 61951978 -55910649 + L2 LINE L2 1394 2617 -697 619 269 172 44 chr9 61951996 61952357 -55910270 + L2 LINE L2 2907 3313 0 241 315 98 49 chr9 61953484 61953627 -55909000 + MIR SINE MIR 65 214 -48 346 336 32 65 chr9 61954181 61954398 -55908229 - L2 LINE L2 -44 3228 3019 192 333 114 34 chr9 61954498 61954762 -55907865 - L2 LINE L2 -459 2855 2571 266 119 0 0 chr9 61955080 61955122 -55907505 + L1M2 LINE L1 5405 5446 -854 408 20 0 0 chr9 61955123 61955172 -55907455 + (CA)n Simple_repeat Simple_repeat 1 49 0 348 75 15 45 chr9 61955314 61955381 -55907246 + L1PB2 LINE L1 6087 6151 0 2469 92 11 11 chr9 61955381 61955728 -55906899 + L1PB2 LINE L1 5440 5786 -365 306 0 0 0 chr9 61955728 61955762 -55906865 + (CA)n Simple_repeat Simple_repeat 2 35 0 2495 121 3 24 chr9 61956032 61956411 -55906216 + L1PB2 LINE L1 5781 6151 0 587 276 61 49 chr9 61957833 61958204 -55904423 - MLT1K LTR MaLR -46 542 151 1105 195 118 50 chr9 61958344 61958759 -55903868 - MLT1B LTR MaLR 0 390 7 469 323 50 47 chr9 61959043 61959384 -55903243 + MARNA DNA Mariner 149 490 -96 487 277 48 52 chr9 61959616 61959865 -55902762 - MLT1I LTR MaLR -61 348 101 411 332 115 24 chr9 61960019 61960227 -55902400 - L2 LINE L2 0 3272 3046 181 347 0 0 chr9 61960345 61960394 -55902233 - L2 LINE L2 -15 3257 3209 372 311 0 33 chr9 61960739 61960861 -55901766 + L2 LINE L2 3155 3272 0 875 140 121 63 chr9 61961486 61961693 -55900934 - MER20 DNA MER1_type 0 219 1 195 256 0 0 chr9 61963421 61963460 -55899167 + L2 LINE L2 3215 3253 -19 * 199 219 0 0 chr9 61963432 61963473 -55899154 + MIR SINE MIR 222 262 0 412 317 54 16 chr9 61963695 61963881 -55898746 - MIR3 SINE MIR -13 195 3 261 253 241 0 chr9 61964082 61964161 -55898466 - L2 LINE L2 -2 3311 3214 2211 110 27 3 chr9 61964279 61964579 -55898048 + AluSc SINE Alu 3 309 0 1147 269 21 0 chr9 61964625 61964907 -55897720 + LTR16C LTR ERVL 191 478 -13 643 294 106 30 chr9 61964913 61965142 -55897485 - L2 LINE L2 -91 3222 3012 2507 87 0 0 chr9 61965142 61965452 -55897175 + AluSx SINE Alu 1 310 -2 643 294 106 30 chr9 61965452 61965793 -55896834 - L2 LINE L2 -301 3012 2587 267 309 25 0 chr9 61966161 61966242 -55896385 + LTR16C LTR ERVL 206 288 -203 763 235 82 55 chr9 61966290 61966545 -55896082 - MLT1J1 LTR MaLR -169 277 16 375 323 78 50 chr9 61968398 61968797 -55893830 + L2 LINE L2 2323 2732 -582 214 264 66 22 chr9 61969389 61969480 -55893147 + MIR SINE MIR 56 150 -112 516 266 54 54 chr9 61969819 61970060 -55892567 + L1ME LINE L1 5522 5762 -359 180 77 0 0 chr9 61971172 61971198 -55891429 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 402 21 0 0 chr9 61971365 61971412 -55891215 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 2693 212 9 9 chr9 61973064 61973620 -55889007 - MER74A LTR ERVL -2 556 1 1464 91 20 0 chr9 61974786 61974984 -55887643 + L1PB1 LINE L1 5948 6149 -2 2295 121 0 0 chr9 61975209 61975516 -55887111 - AluSg SINE Alu -3 307 1 196 281 0 35 chr9 61976852 61976909 -55885718 - MIR SINE MIR -64 144 90 3728 142 84 5 chr9 61977065 61977684 -55884943 + L1MB8 LINE L1 5505 6172 -6 215 231 0 39 chr9 61980118 61980170 -55882457 + L2 LINE L2 3181 3230 -83 325 292 11 0 chr9 61980576 61980665 -55881962 - L1MC4 LINE L1 -1339 6703 6614 206 197 33 0 chr9 61980667 61980728 -55881899 + (TATATG)n Simple_repeat Simple_repeat 5 67 0 226 186 0 0 chr9 61980752 61980795 -55881832 + LTR66 LTR ERVL 393 435 -175 324 0 0 0 chr9 61980809 61980845 -55881782 + (TA)n Simple_repeat Simple_repeat 1 36 0 1404 170 7 63 chr9 61980848 61981118 -55881509 - AluJo SINE Alu -44 268 14 246 213 0 0 chr9 61983177 61983224 -55879403 + (TG)n Simple_repeat Simple_repeat 2 48 0 317 312 0 0 chr9 61985287 61985364 -55877263 + MER81 DNA DNA 33 109 -5 380 278 63 0 chr9 61985469 61985595 -55877032 - L1ME4a LINE L1 -18 6103 5970 942 234 45 82 chr9 61988567 61988836 -55873791 - MER96B DNA MER1_type -3 414 165 2237 94 0 10 chr9 61988836 61989135 -55873492 + AluSc SINE Alu 1 296 -13 942 234 45 82 chr9 61989135 61989292 -55873335 - MER96B DNA MER1_type -252 165 4 384 139 0 0 chr9 61989625 61989704 -55872923 + (GA)n Simple_repeat Simple_repeat 2 80 0 233 208 21 0 chr9 61990062 61990110 -55872517 - MIR SINE MIR -111 151 103 263 282 0 14 chr9 61992004 61992075 -55870552 + L2 LINE L2 3243 3312 -1 506 303 32 22 chr9 61992443 61992628 -55869999 - MIR SINE MIR -58 204 18 219 186 0 0 chr9 61993202 61993245 -55869382 + (TG)n Simple_repeat Simple_repeat 1 43 0 2071 118 20 13 chr9 61993266 61993572 -55869055 - AluSq SINE Alu -5 308 1 329 370 15 7 chr9 61993582 61993717 -55868910 + MER5A DNA MER1_type 54 189 0 2271 73 3 27 chr9 61996259 61996560 -55866067 + AluSg SINE Alu 1 294 -16 229 266 0 125 chr9 61998814 61998887 -55863740 - MIR SINE MIR -122 140 88 2155 71 0 21 chr9 61998887 61999170 -55863457 + AluSc SINE Alu 33 309 0 229 266 0 125 chr9 61999170 61999224 -55863403 - MIR SINE MIR -174 88 29 2775 10 0 10 chr9 61999514 61999825 -55862802 - AluY SINE Alu -3 308 1 1964 167 0 0 chr9 61999937 62000248 -55862379 - AluSx SINE Alu -1 311 1 312 278 21 21 chr9 62000399 62000496 -55862131 + MIR SINE MIR 47 143 -65 321 181 49 4 chr9 62001500 62001585 -55861042 - MLT1G1 LTR MaLR -4 588 455 257 290 123 33 chr9 62001666 62001935 -55860692 - MLT1F LTR MaLR -252 278 20 2273 104 0 3 chr9 62003187 62003484 -55859143 + AluSq SINE Alu 1 296 -17 332 208 0 0 chr9 62003492 62003564 -55859063 + CT-rich Low_complexity Low_complexity 2 73 0 1055 214 18 70 chr9 62003580 62003896 -55858731 - L1ME2 LINE L1 -16 6148 5856 197 172 52 52 chr9 62006792 62006850 -55855777 - L2 LINE L2 0 3272 3215 * 433 268 0 10 chr9 62006848 62006945 -55855682 + L2 LINE L2 3193 3288 -25 258 293 33 80 chr9 62007597 62007713 -55854914 - MIR SINE MIR -117 145 36 2130 122 0 3 chr9 62007713 62008008 -55854619 - AluSc SINE Alu -15 294 1 258 293 33 80 chr9 62008008 62008041 -55854586 - MIR SINE MIR -226 36 3 257 27 54 0 chr9 62009060 62009097 -55853530 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 190 341 31 54 chr9 62009146 62009275 -55853352 - MIR SINE MIR -62 146 21 1956 99 40 4 chr9 62009292 62009564 -55853063 - AluSx SINE Alu -12 300 19 262 338 113 7 chr9 62010779 62010921 -55851706 - MIR3 SINE MIR -15 193 37 1891 112 0 51 chr9 62011754 62012119 -55850508 - AluSc SINE Alu 0 350 1 2031 130 9 25 chr9 62012504 62012820 -55849807 + AluSx SINE Alu 1 311 -1 183 139 0 0 chr9 62013141 62013177 -55849450 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 387 348 65 0 chr9 62013356 62013540 -55849087 + MIR SINE MIR 25 220 -42 26 0 0 0 chr9 62013687 62013713 -55848914 + AT_rich Low_complexity Low_complexity 1 26 0 264 196 22 0 chr9 62013767 62013813 -55848814 - MER3 DNA MER1_type -153 56 10 416 171 0 11 chr9 62014260 62014348 -55848279 + CT-rich Low_complexity Low_complexity 2 88 0 279 0 0 0 chr9 62015881 62015912 -55846715 + (TG)n Simple_repeat Simple_repeat 1 31 0 274 345 131 32 chr9 62016393 62017071 -55845556 - L2 LINE L2 -725 2589 1845 207 0 0 0 chr9 62018709 62018732 -55843895 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 278 109 0 0 chr9 62018989 62019035 -55843592 + L1ME4a LINE L1 6075 6120 -1 310 239 53 53 chr9 62019227 62019340 -55843287 - L2 LINE L2 -3 3269 3157 5233 174 42 38 chr9 62019479 62020822 -55841805 - L1MD1 LINE L1 -1 6635 5283 1492 210 67 56 chr9 62020822 62021284 -55841343 - MLT1C LTR MaLR 0 467 1 5233 174 42 38 chr9 62021284 62021744 -55840883 - L1MD1 LINE L1 -1353 5283 4826 * 6269 205 89 37 chr9 62021738 62023249 -55839378 - L1MD1 LINE L1 -2302 4238 2807 2484 56 10 3 chr9 62023249 62023553 -55839074 - AluY SINE Alu -5 306 1 6269 205 89 37 chr9 62023553 62024504 -55838123 - L1MD1 LINE L1 -3733 2807 1907 198 0 0 0 chr9 62024504 62024526 -55838101 + (TTA)n Simple_repeat Simple_repeat 3 24 0 6269 205 89 37 chr9 62024526 62024804 -55837823 - L1MD1 LINE L1 -4633 1907 1645 180 77 0 0 chr9 62024804 62024830 -55837797 + (TTTG)n Simple_repeat Simple_repeat 4 29 0 6269 205 89 37 chr9 62024830 62025549 -55837078 - L1MD1 LINE L1 -4895 1645 965 2263 131 3 43 chr9 62025549 62025900 -55836727 - MER1B DNA MER1_type 0 337 1 6269 205 89 37 chr9 62025900 62025917 -55836710 - L1MD1 LINE L1 -5575 965 950 2023 177 48 21 chr9 62025917 62026336 -55836291 + MSTB1 LTR MaLR 3 432 0 6269 205 89 37 chr9 62026336 62026415 -55836212 - L1MD1 LINE L1 -5590 950 19 415 276 103 7 chr9 62027063 62027208 -55835419 - MER117 DNA MER1_type -36 161 3 298 361 84 24 chr9 62029465 62029714 -55832913 + L2 LINE L2 2562 2825 -489 349 364 18 26 chr9 62030106 62030302 -55832325 + MIR SINE MIR 21 212 -50 244 292 81 87 chr9 62030454 62030639 -55831988 - MIR SINE MIR -10 252 69 388 301 89 34 chr9 62032433 62032669 -55829958 + HAL1 LINE L1 2246 2494 -13 22 35 0 0 chr9 62032669 62032698 -55829929 + AT_rich Low_complexity Low_complexity 1 29 0 395 200 0 0 chr9 62032761 62032841 -55829786 + MER116 DNA Mariner 1 80 0 356 292 35 55 chr9 62033201 62033403 -55829224 + MIR SINE MIR 35 232 -30 1708 121 72 23 chr9 62034327 62034632 -55827995 + AluSx SINE Alu 5 322 0 967 143 0 34 chr9 62034758 62034995 -55827632 + AluJb SINE Alu 141 372 0 200 279 0 0 chr9 62035865 62035908 -55826719 + polypyrimidine Low_complexity Low_complexity 2 44 0 299 207 18 72 chr9 62036593 62036704 -55825923 - MIR3 SINE MIR -1 207 103 1009 110 6 6 chr9 62036783 62036947 -55825680 + (TTCC)n Simple_repeat Simple_repeat 3 166 0 2206 88 3 14 chr9 62036947 62037233 -55825394 - AluSp SINE Alu -28 285 1 204 315 79 31 chr9 62038109 62038236 -55824391 + L2 LINE L2 3136 3268 -4 269 325 90 32 chr9 62038345 62038533 -55824094 + MIR SINE MIR 56 254 -8 370 300 64 14 chr9 62039289 62039429 -55823198 + MIR3 SINE MIR 33 179 -29 2258 107 7 10 chr9 62040271 62040571 -55822056 - AluSx SINE Alu -13 299 1 2374 89 0 7 chr9 62041837 62042129 -55820498 + AluSg SINE Alu 1 290 -20 207 0 0 0 chr9 62042129 62042152 -55820475 + (GA)n Simple_repeat Simple_repeat 2 24 0 579 300 79 24 chr9 62042862 62043202 -55819425 + L1ME3 LINE L1 5723 6081 -81 257 300 180 7 chr9 62043676 62043826 -55818801 + MIR SINE MIR 25 200 -62 214 319 0 43 chr9 62046654 62046748 -55815879 - MIR3 SINE MIR -3 205 116 386 207 20 63 chr9 62048743 62048884 -55813743 - MIR3 SINE MIR -6 202 65 25 37 0 0 chr9 62049303 62049330 -55813297 + AT_rich Low_complexity Low_complexity 1 27 0 267 203 16 47 chr9 62049408 62049472 -55813155 + L2 LINE L2 3210 3271 -1 2067 158 0 3 chr9 62049547 62049858 -55812769 + AluJb SINE Alu 3 312 0 283 349 0 0 chr9 62050046 62050132 -55812495 - MIR3 SINE MIR -42 166 81 1663 258 32 47 chr9 62050481 62051040 -55811587 - MLT1K LTR MaLR -35 553 3 1226 200 19 46 chr9 62053348 62053673 -55808954 - MER33 DNA MER1_type -7 317 2 216 0 0 0 chr9 62054996 62055020 -55807607 + (TC)n Simple_repeat Simple_repeat 1 24 0 * 342 0 0 0 chr9 62055019 62055057 -55807570 + (CA)n Simple_repeat Simple_repeat 1 38 0 1141 102 0 12 chr9 62055065 62055232 -55807395 - AluY SINE Alu -11 300 136 398 241 12 0 chr9 62056697 62056780 -55805847 + LTR16A LTR ERVL 362 445 -5 234 297 14 0 chr9 62057389 62057463 -55805164 - L2 LINE L2 -213 3059 2985 2247 207 36 11 chr9 62057463 62057763 -55804864 - MLT1D LTR MaLR 0 505 187 2125 141 0 0 chr9 62057763 62058062 -55804565 - AluSx SINE Alu -13 299 1 2247 207 36 11 chr9 62058062 62058230 -55804397 - MLT1D LTR MaLR -318 187 25 236 333 49 28 chr9 62058454 62058598 -55804029 + L2 LINE L2 3112 3258 -14 268 258 16 0 chr9 62058823 62058885 -55803742 + L1MC5 LINE L1 7830 7892 -69 1909 146 7 0 chr9 62060252 62060564 -55802063 - AluSx SINE Alu 0 314 1 215 316 11 32 chr9 62060780 62060875 -55801752 + MIR SINE MIR 23 115 -147 188 280 97 21 chr9 62062696 62062789 -55799838 - L2 LINE L2 -1 3271 3172 333 218 23 35 chr9 62062976 62063063 -55799564 - MIR SINE MIR -174 88 3 25 0 0 0 chr9 62063234 62063259 -55799368 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr9 62063758 62063779 -55798848 + AT_rich Low_complexity Low_complexity 1 21 0 412 227 62 8 chr9 62064168 62064296 -55798331 - MIR SINE MIR -79 183 49 215 335 72 54 chr9 62064510 62064677 -55797950 - MIR3 SINE MIR -21 187 18 1874 167 46 46 chr9 62066372 62066762 -55795865 - MLT1B LTR MaLR 0 390 1 4763 178 20 9 chr9 62068159 62069067 -55793560 + L1MB7 LINE L1 5256 6169 -15 24 32 0 0 chr9 62069922 62069953 -55792674 + AT_rich Low_complexity Low_complexity 1 31 0 206 118 0 0 chr9 62070078 62070112 -55792515 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 192 163 0 0 chr9 62071322 62071365 -55791262 + (ATTG)n Simple_repeat Simple_repeat 3 45 0 253 286 0 0 chr9 62071624 62071701 -55790926 + L2 LINE L2 3187 3263 -9 199 288 0 61 chr9 62072406 62072472 -55790155 - L2 LINE L2 0 3313 3252 190 338 13 26 chr9 62072576 62072653 -55789974 - L2 LINE L2 -181 3091 3016 240 245 0 0 chr9 62073105 62073158 -55789469 + MER103 DNA DNA 55 107 -59 233 266 94 23 chr9 62073678 62073806 -55788821 - MLT1L LTR MaLR -2 613 477 411 241 58 84 chr9 62073852 62074043 -55788584 - MLT1L LTR MaLR -221 394 209 4366 243 46 9 chr9 62074269 62075477 -55787150 - L1MEc LINE L1 -4894 1502 250 221 203 116 29 chr9 62075822 62075891 -55786736 + L3b LINE CR1 1264 1338 -245 285 360 6 41 chr9 62077043 62077215 -55785412 + MER5B DNA MER1_type 5 170 -8 1995 138 0 3 chr9 62077222 62077527 -55785100 - AluSg SINE Alu 0 304 1 193 291 0 0 chr9 62078913 62078968 -55783659 - MIR SINE MIR -65 143 89 267 288 45 61 chr9 62079384 62079516 -55783111 + MIR SINE MIR 24 153 -55 1142 194 167 11 chr9 62080220 62080603 -55782024 - Charlie4a DNA MER1_type -33 475 31 196 278 159 32 chr9 62131766 62131892 -55730735 - MIR3 SINE MIR -26 182 41 26 0 0 0 chr9 62132869 62132895 -55729732 + GC_rich Low_complexity Low_complexity 1 26 0 216 306 65 24 chr9 62133046 62133170 -55729457 - MIR SINE MIR -53 209 81 1272 247 42 58 chr9 62135858 62136238 -55726389 + MLT1A2 LTR MaLR 1 374 0 203 227 160 76 chr9 62136330 62136449 -55726178 + MIR SINE MIR 65 193 -69 2208 89 0 4 chr9 62136455 62136783 -55725844 - AluSc SINE Alu 0 327 1 508 240 41 3 chr9 62136793 62136928 -55725699 - L1ME1 LINE L1 -1 6177 6035 283 188 125 0 chr9 62136967 62137047 -55725580 - L1ME1 LINE L1 -203 5963 5874 225 139 0 0 chr9 62137166 62137209 -55725418 + (TTA)n Simple_repeat Simple_repeat 2 44 0 2092 96 7 0 chr9 62137804 62138075 -55724552 - AluSg SINE Alu -17 293 21 321 232 216 33 chr9 62141605 62141786 -55720841 - L2 LINE L2 -1 3312 3099 1159 320 20 7 chr9 62141799 62142246 -55720381 - L2 LINE L2 -428 2886 2434 538 170 19 25 chr9 62142286 62142445 -55720182 + GA-rich Low_complexity Low_complexity 4 161 0 1131 258 67 51 chr9 62143948 62144379 -55718248 + L2 LINE L2 2876 3313 0 186 212 0 0 chr9 62145325 62145358 -55717269 - L2 LINE L2 0 3313 3281 234 281 83 83 chr9 62145509 62145630 -55716997 - L2 LINE L2 -237 3035 2915 305 207 121 35 chr9 62145967 62146083 -55716544 + MLT1J LTR MaLR 384 509 -2 257 257 10 50 chr9 62150851 62150952 -55711675 + CT-rich Low_complexity Low_complexity 3 99 0 221 224 0 20 chr9 62152870 62152919 -55709708 + (TA)n Simple_repeat Simple_repeat 2 49 0 307 350 14 21 chr9 62153693 62153833 -55708794 - MIR SINE MIR -112 150 12 210 299 21 10 chr9 62154115 62154212 -55708415 + (TATG)n Simple_repeat Simple_repeat 2 99 0 267 54 0 0 chr9 62155279 62155316 -55707311 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 26 0 0 0 chr9 62155354 62155380 -55707247 + AT_rich Low_complexity Low_complexity 1 26 0 850 181 7 0 chr9 62156380 62156524 -55706103 - FAM SINE Alu -12 173 29 497 219 0 0 chr9 62156515 62156611 -55706016 - AluYb8 SINE Alu -106 212 117 * 1112 189 11 0 chr9 62156765 62156955 -55705672 + MER3 DNA MER1_type 18 209 0 578 211 90 26 chr9 62157841 62157886 -55704741 - MIR SINE MIR -6 256 215 1024 198 82 158 chr9 62157886 62158243 -55704384 - MLT1D LTR MaLR 0 505 202 2215 100 7 0 chr9 62158243 62158532 -55704095 - AluSc SINE Alu -2 307 17 1024 198 82 158 chr9 62158532 62158720 -55703907 - MLT1D LTR MaLR -303 202 1 578 211 90 26 chr9 62158720 62158830 -55703797 - MIR SINE MIR -47 215 91 212 224 209 0 chr9 62158860 62158927 -55703700 - MIR SINE MIR -21 241 161 423 132 66 13 chr9 62159298 62159374 -55703253 + MADE1 DNA Mariner 1 80 0 2152 130 0 3 chr9 62160683 62160983 -55701644 - AluSg SINE Alu -11 299 1 2708 259 67 22 chr9 62160995 62161935 -55700692 - HAL1 LINE L1 -359 2148 1167 244 343 79 29 chr9 62161973 62162113 -55700514 + L2 LINE L2 2722 2868 -446 296 335 66 31 chr9 62162358 62162615 -55700012 - L1MEc LINE L1 -4720 1780 1399 278 311 90 39 chr9 62162676 62162988 -55699639 - L1MEc LINE L1 -4935 1437 1110 1018 234 81 69 chr9 62163090 62163537 -55699090 + MLT1D LTR MaLR 1 504 -1 4924 170 12 22 chr9 62163853 62164654 -55697973 - MER54B LTR ERVL 0 793 1 390 312 47 29 chr9 62165093 62165263 -55697364 + MER5B DNA MER1_type 6 178 0 334 262 159 14 chr9 62166008 62166153 -55696474 + L2 LINE L2 3148 3313 0 223 281 0 18 chr9 62166268 62166325 -55696302 + MIR SINE MIR 84 139 -69 2139 111 3 3 chr9 62166691 62166980 -55695647 + AluSp SINE Alu 1 289 -24 225 0 0 0 chr9 62166983 62167008 -55695619 + (TTA)n Simple_repeat Simple_repeat 2 26 0 308 301 62 57 chr9 62167291 62167500 -55695127 - L3 LINE CR1 -107 1470 1261 2179 125 0 28 chr9 62167716 62168037 -55694590 - AluSx SINE Alu 0 312 1 315 323 62 12 chr9 62169412 62169573 -55693054 - MIR3 SINE MIR -7 201 33 350 276 116 48 chr9 62173412 62173632 -55688995 + MIR SINE MIR 5 237 -25 214 294 62 34 chr9 62173753 62173899 -55688728 + MIR SINE MIR 89 238 -24 1388 306 30 9 chr9 62173910 62174342 -55688285 - LTR16A LTR ERVL -9 441 1 270 167 0 0 chr9 62174568 62174628 -55687999 + T-rich Low_complexity Low_complexity 1 60 0 1773 139 7 21 chr9 62174661 62174948 -55687679 - AluSx SINE Alu -29 283 1 1414 175 4 4 chr9 62175174 62175414 -55687213 + MLT1E-int LTR MaLR 1348 1587 -148 480 92 0 0 chr9 62175414 62175479 -55687148 + MSTD LTR MaLR 332 396 0 1038 144 99 0 chr9 62175573 62175775 -55686852 - L1MC2 LINE L1 0 6344 6123 5719 175 92 11 chr9 62175776 62176925 -55685702 - L1MC3 LINE L1 -205 7580 6339 24 0 0 0 chr9 62176934 62176958 -55685669 + AT_rich Low_complexity Low_complexity 1 24 0 379 91 0 0 chr9 62176958 62177013 -55685614 - L1PB3 LINE L1 -1 6153 6099 479 195 0 0 chr9 62177021 62177108 -55685519 - L1PB3 LINE L1 -104 6050 5964 437 195 0 0 chr9 62177106 62177188 -55685439 - L1MC3 LINE L1 -1432 6353 6272 * 579 210 68 58 chr9 62177189 62177378 -55685249 + LTR41 LTR ERVL 37 254 -541 5386 221 56 35 chr9 62177431 62178807 -55683820 + MER45R DNA AcHobo 1 1405 -176 1913 130 53 0 chr9 62178936 62179221 -55683406 - AluSq SINE Alu -13 300 1 403 260 150 16 chr9 62179385 62179512 -55683115 + MLT1E LTR MaLR 5 148 -445 2181 107 27 7 chr9 62179528 62179828 -55682799 - AluSq SINE Alu -7 306 1 2292 114 0 0 chr9 62180394 62180692 -55681935 - AluSq SINE Alu -15 298 1 903 286 73 38 chr9 62180914 62181313 -55681314 - LTR16A LTR ERVL -37 413 1 2505 68 0 3 chr9 62181596 62181907 -55680720 - AluY SINE Alu -1 310 1 319 197 243 16 chr9 62183523 62183670 -55678957 + MIR SINE MIR 21 192 -55 322 234 13 26 chr9 62183743 62183820 -55678807 + L2 LINE L2 3236 3311 -2 347 246 50 98 chr9 62183965 62184392 -55678235 + L1ME3 LINE L1 5541 5948 -214 33 0 0 0 chr9 62184604 62184637 -55677990 + AT_rich Low_complexity Low_complexity 1 33 0 443 343 35 24 chr9 62184677 62184846 -55677781 - MIR3 SINE MIR -23 185 15 281 155 17 0 chr9 62187366 62187424 -55675203 + GA-rich Low_complexity Low_complexity 1 59 0 1626 178 0 44 chr9 62187766 62188059 -55674568 + AluJo SINE Alu 1 280 -32 234 0 0 0 chr9 62188080 62188106 -55674521 + (TAA)n Simple_repeat Simple_repeat 2 27 0 800 263 61 31 chr9 62188735 62189211 -55673416 - MER113 DNA MER1_type? -31 490 1 180 269 45 60 chr9 62189800 62189867 -55672760 + MIR SINE MIR 20 85 -177 2599 168 59 2 chr9 62191123 62191582 -55671045 + MER66B LTR ERV1 2 486 0 412 269 16 40 chr9 62191918 62192161 -55670466 - MER41B LTR ERV1 -205 430 54 184 267 22 0 chr9 62192415 62192460 -55670167 - MIR SINE MIR -55 153 108 * 254 260 45 91 chr9 62192456 62192610 -55670017 - L2 LINE L2 -15 3298 3152 565 306 243 25 chr9 62193443 62193492 -55669135 - L2 LINE L2 -337 2977 2940 2261 108 0 16 chr9 62193492 62193807 -55668820 + AluSp SINE Alu 1 310 -3 565 306 243 25 chr9 62193807 62194276 -55668351 - L2 LINE L2 -374 2940 2346 459 238 119 67 chr9 62194981 62195402 -55667225 - LTR37B LTR ERV1 -5 463 21 2578 155 9 2 chr9 62195564 62195996 -55666631 + MER4D LTR ERV1 1 435 -468 2407 154 29 9 chr9 62196058 62196507 -55666120 + MER4D LTR ERV1 441 898 -5 1925 141 85 20 chr9 62197486 62197827 -55664800 + THE1B LTR MaLR 1 363 -1 11922 88 5 4 chr9 62197828 62199406 -55663221 + THE1B-int LTR MaLR 1 1580 0 1893 138 83 37 chr9 62199406 62199754 -55662873 + THE1B LTR MaLR 1 364 0 2359 176 19 12 chr9 62199792 62200213 -55662414 - MSTB LTR MaLR -2 424 1 1336 233 56 34 chr9 62200449 62200892 -55661735 + MLT1D LTR MaLR 1 453 -52 40700 35 22 1 chr9 62200896 62206903 -55655724 - L1PA3 LINE L1 -8 6147 12 341 145 0 14 chr9 62206905 62206974 -55655653 + MLT1D LTR MaLR 430 497 -8 249 281 31 162 chr9 62207158 62207386 -55655241 - L2 LINE L2 -48 3224 3027 504 306 57 34 chr9 62207544 62207753 -55654874 - MIR SINE MIR -36 226 13 409 278 30 35 chr9 62208220 62208334 -55654293 + MIR SINE MIR 48 161 -101 2268 198 106 40 chr9 62208334 62208955 -55653672 + MLT2F LTR ERVL 1 662 -1 409 278 30 35 chr9 62208955 62209041 -55653586 + MIR SINE MIR 161 246 -16 247 247 80 0 chr9 62209214 62209343 -55653284 + MER91B DNA MER1_type 1 137 -3 362 265 37 15 chr9 62210316 62210452 -55652175 + CT-rich Low_complexity Low_complexity 5 143 0 616 276 85 5 chr9 62210459 62210658 -55651969 + MIR SINE MIR 28 242 -20 274 270 27 0 chr9 62210681 62210755 -55651872 + CT-rich Low_complexity Low_complexity 2 77 0 1360 209 82 9 chr9 62211094 62211434 -55651193 + MLT1A1 LTR MaLR 1 365 0 234 0 0 0 chr9 62211905 62211931 -55650696 + (T)n Simple_repeat Simple_repeat 1 26 0 464 281 25 8 chr9 62212327 62212448 -55650179 - L2 LINE L2 0 3313 3191 906 245 0 5 chr9 62212450 62212642 -55649985 - MER58A DNA MER1_type 0 224 34 2147 135 33 28 chr9 62212663 62213025 -55649602 - THE1B LTR MaLR 0 364 1 2305 151 25 32 chr9 62213697 62214134 -55648493 - Tigger2a DNA MER2_type 0 434 1 516 236 8 47 chr9 62215339 62215466 -55647161 - L2 LINE L2 -1 3312 3191 630 273 68 34 chr9 62215596 62215801 -55646826 - MIR SINE MIR -43 219 8 1615 144 7 35 chr9 62215838 62216123 -55646504 - AluJo SINE Alu -15 297 21 620 333 50 16 chr9 62216238 62216749 -55645878 + L1MC4a LINE L1 5417 5819 -302 522 212 45 99 chr9 62217188 62217410 -55645217 - MER58C DNA MER1_type -5 210 1 1707 41 23 0 chr9 62217618 62217836 -55644791 - L1PA13 LINE L1 -2 6161 5939 245 0 0 0 chr9 62217896 62217925 -55644702 + L1MC1 LINE L1 6288 6316 -17 2396 83 0 3 chr9 62217938 62218240 -55644387 - AluSq SINE Alu -12 301 1 393 207 0 12 chr9 62219120 62219202 -55643425 + MIR3 SINE MIR 125 205 -3 857 306 147 46 chr9 62219400 62220236 -55642391 - L2 LINE L2 -1 3271 2521 2268 119 30 25 chr9 62220236 62220598 -55642029 + THE1B LTR MaLR 1 364 0 857 306 147 46 chr9 62220598 62221249 -55641378 - L2 LINE L2 -751 2521 1572 188 293 0 0 chr9 62221572 62221613 -55641014 + L2 LINE L2 3139 3179 -93 329 243 50 71 chr9 62221856 62221996 -55640631 + MIR SINE MIR 28 164 -98 2297 209 60 27 chr9 62222346 62222948 -55639679 - MER74B LTR ERVL 0 622 1 2222 105 0 3 chr9 62223271 62223566 -55639061 + AluSx SINE Alu 1 294 -18 555 146 10 0 chr9 62223900 62223996 -55638631 + L1MB3 LINE L1 5547 5643 -540 671 126 8 8 chr9 62224002 62224121 -55638506 + L1MB3 LINE L1 5925 6043 -140 2186 117 0 19 chr9 62224184 62224500 -55638127 - AluSx SINE Alu -2 310 1 3630 257 66 52 chr9 62224502 62227147 -55635480 - L1ME LINE L1 -454 5976 3291 859 224 104 71 chr9 62227162 62227678 -55634949 - L1ME LINE L1 -3426 2980 2443 2051 137 3 10 chr9 62227678 62227992 -55634635 - AluSx SINE Alu 0 312 1 859 224 104 71 chr9 62227992 62228024 -55634603 - L1ME LINE L1 -3963 2443 2414 410 285 113 11 chr9 62228168 62228354 -55634273 - L1ME LINE L1 -4131 2456 2252 307 306 46 19 chr9 62228668 62228776 -55633851 - L1ME LINE L1 -4831 1756 1646 2119 96 7 0 chr9 62228800 62229146 -55633481 - AluY SINE Alu 0 348 1 375 307 85 40 chr9 62229190 62229568 -55633059 - L1ME LINE L1 -5042 1367 973 390 297 91 43 chr9 62229731 62229788 -55632839 - HAL1b LINE L1 -168 1180 1127 1897 145 29 0 chr9 62229788 62229996 -55632631 - AluSx SINE Alu 0 339 118 276 30 0 0 chr9 62229996 62230029 -55632598 + (TG)n Simple_repeat Simple_repeat 2 34 0 1897 145 29 0 chr9 62230029 62230151 -55632476 - AluSx SINE Alu -221 118 1 390 297 91 43 chr9 62230151 62230441 -55632186 - HAL1b LINE L1 -221 1127 733 7703 218 18 34 chr9 62230455 62231755 -55630872 - L1MD1 LINE L1 0 6636 5317 2460 11 4 0 chr9 62231755 62232027 -55630600 + AluYa5 SINE Alu 37 309 -2 7703 218 18 34 chr9 62232027 62235348 -55627279 - L1MD1 LINE L1 -1319 5317 1945 2184 121 0 10 chr9 62235348 62235661 -55626966 - AluY SINE Alu -1 310 1 7703 218 18 34 chr9 62235661 62235784 -55626843 - L1MD1 LINE L1 -4691 1945 1822 818 174 15 15 chr9 62235784 62235916 -55626711 + FLAM_A SINE Alu 1 132 -1 7703 218 18 34 chr9 62235916 62236586 -55626041 - L1MD1 LINE L1 -4814 1822 991 235 236 36 0 chr9 62237268 62237323 -55625304 - L1MD1 LINE L1 -5900 640 584 372 290 171 60 chr9 62237590 62237924 -55624703 - L1MD1 LINE L1 -6154 386 16 243 211 19 0 chr9 62237911 62237963 -55624664 - HAL1b LINE L1 -593 755 703 * 988 185 82 10 chr9 62238107 62238302 -55624325 + MER63A DNA MER1_type 1 209 -1 207 0 0 0 chr9 62238614 62238637 -55623990 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 884 276 97 54 chr9 62239178 62239819 -55622808 + L2 LINE L2 2560 3236 -77 1059 174 37 32 chr9 62239819 62240037 -55622590 - L1MB3 LINE L1 -3 6180 5962 884 276 97 54 chr9 62240037 62240119 -55622508 + L2 LINE L2 3236 3313 0 327 257 40 10 chr9 62241324 62241425 -55621202 - Charlie8 DNA MER1_type -2196 221 118 308 161 62 74 chr9 62241457 62241522 -55621105 - MER116 DNA Mariner 0 80 15 1719 215 111 36 chr9 62241522 62241992 -55620635 + MLT1D LTR MaLR 1 505 0 308 161 62 74 chr9 62241992 62242007 -55620620 - MER116 DNA Mariner -65 15 1 300 149 25 25 chr9 62242027 62242148 -55620479 + (TA)n Simple_repeat Simple_repeat 2 122 0 3158 85 67 7 chr9 62242156 62242591 -55620036 - MER4C LTR ERV1 -3 462 2 206 205 0 0 chr9 62242632 62242671 -55619956 + (TG)n Simple_repeat Simple_repeat 2 40 0 3449 157 25 54 chr9 62243099 62243806 -55618821 - MER54A LTR ERVL 0 901 23 207 276 0 17 chr9 62244245 62244303 -55618324 - MER5C DNA MER1_type -267 57 1 4113 159 25 34 chr9 62244307 62245564 -55617063 - L1MA5 LINE L1 -271 6029 4791 1679 98 4 0 chr9 62245564 62245788 -55616839 + L1MA5 LINE L1 6063 6298 -2 577 309 65 25 chr9 62247450 62247925 -55614702 - HAL1 LINE L1 -1005 1502 1009 1726 201 34 41 chr9 62247970 62248387 -55614240 - MER96B DNA MER1_type -2 415 2 1516 182 127 3 chr9 62248449 62248779 -55613848 + L1MB5 LINE L1 5795 6165 -9 261 277 12 12 chr9 62248784 62248867 -55613760 + L1MC4a LINE L1 2228 2310 -4230 2950 213 60 3 chr9 62248917 62249551 -55613076 - MSTD-int LTR MaLR -1064 671 2 2027 137 29 137 chr9 62249553 62249899 -55612728 - MSTD LTR MaLR 0 396 107 2265 101 3 3 chr9 62249899 62250195 -55612432 - AluSc SINE Alu -13 296 1 2027 137 29 137 chr9 62250195 62250292 -55612335 - MSTD LTR MaLR -289 107 1 1851 227 77 77 chr9 62250292 62250932 -55611695 + L1MD2 LINE L1 5704 6343 -16 409 348 109 14 chr9 62250945 62251448 -55611179 + L1MC4a LINE L1 2667 3217 -3323 235 231 0 0 chr9 62251466 62251518 -55611109 + L1MC4a LINE L1 3173 3224 -3316 957 296 156 39 chr9 62251654 62251924 -55610703 + L1MC4a LINE L1 3445 3682 -2858 2269 102 3 7 chr9 62251924 62252227 -55610400 + AluSx SINE Alu 1 302 -10 957 296 156 39 chr9 62252227 62252896 -55609731 + L1MC4a LINE L1 3682 4494 -2046 238 294 73 45 chr9 62253022 62253556 -55609071 + L1MC4a LINE L1 5127 5675 -865 522 252 8 0 chr9 62254498 62254621 -55608006 + L1ME3A LINE L1 5840 5963 -207 641 80 0 11 chr9 62254651 62254739 -55607888 + MER4B LTR ERV1 10 96 -514 2179 139 47 33 chr9 62254751 62255110 -55607517 + THE1B LTR MaLR 1 364 0 563 148 20 30 chr9 62255110 62255193 -55607434 + MER4B LTR ERV1 101 182 -428 2562 148 27 5 chr9 62255183 62255587 -55607040 + MER4E LTR ERV1 367 779 0 547 198 111 35 chr9 62255587 62255759 -55606868 + L1ME3A LINE L1 5985 6169 -1 358 277 50 25 chr9 62255759 62255878 -55606749 + L1MC4a LINE L1 5829 5950 -2252 1995 124 22 68 chr9 62255885 62256285 -55606342 + MER4A LTR ERV1 1 229 -236 427 181 0 0 chr9 62256298 62256370 -55606257 + MER4A LTR ERV1 355 426 -238 2178 73 42 0 chr9 62256391 62256677 -55605950 + AluY SINE Alu 1 298 -13 526 261 43 22 chr9 62256681 62256865 -55605762 + MER4C LTR ERV1 278 465 0 714 256 146 74 chr9 62256899 62257086 -55605541 + L1MC4a LINE L1 6012 6184 -2018 2200 124 0 0 chr9 62257086 62257393 -55605234 + AluSx SINE Alu 1 307 -5 714 256 146 74 chr9 62257393 62257705 -55604922 + L1MC4a LINE L1 6184 6547 -1655 1066 179 11 16 chr9 62258413 62258603 -55604024 - L1PB4 LINE L1 -2 6154 5966 598 237 147 26 chr9 62258869 62259025 -55603602 + MER5A DNA MER1_type 9 183 -6 271 242 101 10 chr9 62259773 62259872 -55602755 - L1ME4a LINE L1 -2 6119 6012 281 305 53 96 chr9 62260167 62260449 -55602178 - L1MC4a LINE L1 -1907 5901 5632 682 276 45 103 chr9 62260622 62261017 -55601610 + MER34 LTR ERV1 1 354 -188 7368 59 7 3 chr9 62261017 62262016 -55600611 + L1PA6 LINE L1 5150 6151 -3 682 276 45 103 chr9 62262016 62262192 -55600435 + MER34 LTR ERV1 354 539 -3 329 256 89 21 chr9 62262210 62262401 -55600226 - L1MC4a LINE L1 -2341 5467 5264 2368 103 0 0 chr9 62262567 62262868 -55599759 + AluSg SINE Alu 1 301 -9 814 142 21 28 chr9 62263147 62263288 -55599339 + FLAM_C SINE Alu 1 140 -3 2279 92 7 3 chr9 62263295 62263589 -55599038 + AluSq SINE Alu 1 295 -18 1544 186 0 0 chr9 62263590 62263843 -55598784 + AluSx SINE Alu 1 253 -59 1733 178 58 53 chr9 62264392 62264563 -55598064 - MSTD LTR MaLR 0 396 227 2432 143 5 22 chr9 62264563 62264933 -55597694 + THE1B LTR MaLR 1 364 0 1733 178 58 53 chr9 62264933 62265155 -55597472 - MSTD LTR MaLR -169 227 1 734 218 81 11 chr9 62265843 62266017 -55596610 + MER5A DNA MER1_type 1 186 -3 203 321 25 0 chr9 62267732 62267813 -55594814 + GA-rich Low_complexity Low_complexity 4 86 0 189 175 0 0 chr9 62267838 62267878 -55594749 + A-rich Low_complexity Low_complexity 1 40 0 2783 209 71 23 chr9 62268269 62268451 -55594176 + MER82 DNA MER2_type 1 173 -480 234 0 0 0 chr9 62268451 62268477 -55594150 + (TG)n Simple_repeat Simple_repeat 1 26 0 2783 209 71 23 chr9 62268477 62268821 -55593806 + MER82 DNA MER2_type 173 564 -89 2241 100 0 13 chr9 62268821 62269132 -55593495 + AluSq SINE Alu 2 308 -5 2783 209 71 23 chr9 62269132 62269220 -55593407 + MER82 DNA MER2_type 564 646 -7 2000 118 0 31 chr9 62269426 62269715 -55592912 - AluSx SINE Alu -32 280 1 189 107 0 0 chr9 62269729 62269757 -55592870 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 363 341 45 0 chr9 62270337 62270513 -55592114 - Charlie8 DNA MER1_type -2131 286 103 297 182 110 123 chr9 62270555 62270709 -55591918 + MLT1J2 LTR MaLR 67 218 -232 659 274 101 21 chr9 62270856 62271093 -55591534 + MLT1J LTR MaLR 1 256 -255 237 309 99 0 chr9 62271162 62271243 -55591384 + MLT1J LTR MaLR 374 462 -49 503 315 99 5 chr9 62271385 62271598 -55591029 + MIR SINE MIR 30 262 0 1888 107 25 18 chr9 62274188 62274488 -55588139 + AluSx SINE Alu 2 303 0 1797 110 0 4 chr9 62275095 62275340 -55587287 + AluSp SINE Alu 60 303 -10 23 0 0 0 chr9 62275642 62275665 -55586962 + AT_rich Low_complexity Low_complexity 1 23 0 189 138 0 0 chr9 62275692 62275721 -55586906 - L2 LINE L2 -378 2894 2866 229 254 17 34 chr9 62276047 62276106 -55586521 - MIR3 SINE MIR -52 156 99 829 259 243 6 chr9 62276420 62276955 -55585672 - L2 LINE L2 0 3313 2650 372 188 0 0 chr9 62276957 62277021 -55585606 + MER77 LTR ERV1 1 64 -541 188 67 33 0 chr9 62277021 62277051 -55585576 + (GAAAA)n Simple_repeat Simple_repeat 4 34 0 2141 102 0 3 chr9 62277735 62278054 -55584573 - AluSg SINE Alu 0 318 1 396 284 58 62 chr9 62278412 62278637 -55583990 + MIR SINE MIR 20 243 -19 460 241 10 116 chr9 62282149 62282215 -55580412 - MIR SINE MIR -56 206 135 180 97 0 0 chr9 62282215 62282246 -55580381 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2159 110 0 0 chr9 62282248 62282530 -55580097 - AluSq SINE Alu -29 284 3 460 241 10 116 chr9 62282530 62282667 -55579960 - MIR SINE MIR -128 134 22 233 315 102 9 chr9 62282686 62282794 -55579833 - L2 LINE L2 -1 3312 3195 2219 153 31 98 chr9 62282794 62283315 -55579312 + L1MC1 LINE L1 5267 5759 -585 1384 196 93 61 chr9 62283315 62283744 -55578883 - MSTB2 LTR MaLR 0 457 15 3488 154 16 7 chr9 62283745 62284321 -55578306 + L1MC1 LINE L1 5753 6333 0 199 308 31 15 chr9 62284397 62284462 -55578165 - L2 LINE L2 -210 3062 2997 498 349 0 7 chr9 62285180 62285326 -55577301 + MIR SINE MIR 7 151 -111 552 286 43 14 chr9 62285988 62286198 -55576429 - LTR33 LTR ERVL 0 521 306 363 341 6 24 chr9 62286258 62286428 -55576199 - LTR33 LTR ERVL -354 167 1 198 206 0 0 chr9 62286483 62286517 -55576110 + L2 LINE L2 3264 3297 -16 695 234 53 18 chr9 62288228 62288399 -55574228 - MER5B DNA MER1_type 0 178 2 387 252 22 128 chr9 62288549 62288823 -55573804 - MER112 DNA MER1_type -8 252 8 183 42 0 0 chr9 62290124 62290148 -55572479 + (TTA)n Simple_repeat Simple_repeat 3 26 0 1678 67 43 0 chr9 62290148 62290357 -55572270 - L1PA7 LINE L1 -18 6136 5919 5121 74 3 10 chr9 62290641 62291790 -55570837 - L1PA7 LINE L1 -351 5803 4662 1336 96 0 0 chr9 62291939 62292127 -55570500 - L1P LINE L1 -1297 4849 4662 293 44 67 0 chr9 62293419 62293464 -55569163 + A-rich Low_complexity Low_complexity 2 49 0 2036 269 21 47 chr9 62293808 62294536 -55568091 - L1ME3A LINE L1 -11 6159 5451 8342 11 0 6 chr9 62294595 62295720 -55566907 + L1PA2 LINE L1 5068 6155 0 480 271 46 13 chr9 62295724 62295875 -55566752 - L1ME1 LINE L1 -4 6162 6007 390 177 0 25 chr9 62296090 62296169 -55566458 + MER3 DNA MER1_type 133 209 0 234 227 0 0 chr9 62296132 62296176 -55566451 - MER3 DNA MER1_type -125 84 41 * 223 331 66 33 chr9 62296426 62296577 -55566050 + MIR SINE MIR 15 170 -92 180 219 0 24 chr9 62296575 62296616 -55566011 + L2 LINE L2 3263 3302 -11 * 309 270 184 26 chr9 62297255 62297407 -55565220 - MIR SINE MIR -72 190 15 692 277 36 24 chr9 62297653 62297906 -55564721 - MIR SINE MIR 0 262 7 765 267 53 12 chr9 62300019 62300266 -55562361 - MIR SINE MIR -4 258 2 195 171 0 0 chr9 62300496 62300531 -55562096 + L2 LINE L2 3266 3300 -13 1117 214 89 32 chr9 62300710 62301079 -55561548 + LTR37A LTR ERV1 33 422 -4 2013 181 53 49 chr9 62301207 62301698 -55560929 - L1ME1 LINE L1 -188 5996 5504 1519 202 46 52 chr9 62302949 62303316 -55559311 + MLT1A1 LTR MaLR 1 365 0 405 277 57 25 chr9 62303661 62303820 -55558807 - MIR SINE MIR -96 166 3 281 288 38 98 chr9 62304653 62304837 -55557790 + L2 LINE L2 3139 3311 -2 2055 129 3 0 chr9 62305436 62305773 -55556854 + AluSx SINE Alu 1 312 0 237 245 0 0 chr9 62306398 62306451 -55556176 + MER53 DNA DNA 1 53 -136 1564 220 61 22 chr9 62308108 62308471 -55554156 + REP3 LTR ERV 145 521 -41 248 188 125 0 chr9 62308659 62308723 -55553904 - MLT1I LTR MaLR -23 386 315 723 269 0 0 chr9 62309608 62309757 -55552870 - MER97a DNA MER1_type? -745 149 1 1024 268 85 8 chr9 62310149 62310526 -55552101 - LTR37B LTR ERV1 -62 406 1 905 233 0 6 chr9 62310659 62310839 -55551788 + MER97b DNA MER1_type? 1 179 -874 2549 177 31 9 chr9 62311034 62311491 -55551136 + MLT1C LTR MaLR 1 467 0 2598 46 7 3 chr9 62311609 62311912 -55550715 - AluY SINE Alu -7 304 1 603 315 5 25 chr9 62311947 62312144 -55550483 - MIR SINE MIR -49 213 21 374 247 12 0 chr9 62312855 62312936 -55549691 - L2 LINE L2 -1 3312 3231 535 253 45 78 chr9 62312965 62313032 -55549595 - MIR SINE MIR -12 250 182 2507 86 14 29 chr9 62313032 62313117 -55549510 - L1PA14 LINE L1 -1 6160 6075 2029 116 4 0 chr9 62313117 62313392 -55549235 - AluSx SINE Alu -15 297 22 2507 86 14 29 chr9 62313392 62313657 -55548970 - L1PA14 LINE L1 -86 6075 5815 535 253 45 78 chr9 62313657 62313834 -55548793 - MIR SINE MIR -80 182 14 667 171 51 0 chr9 62313893 62314010 -55548617 + FLAM_A SINE Alu 20 142 0 184 295 16 16 chr9 62314113 62314174 -55548453 - L2 LINE L2 -1 3271 3211 375 269 8 17 chr9 62314269 62314388 -55548239 - LTR33 LTR ERVL -23 498 381 1982 204 167 14 chr9 62314842 62315332 -55547295 - MLT1F1 LTR MaLR 0 567 3 397 259 23 115 chr9 62319330 62319504 -55543123 - MIR3 SINE MIR -1 207 50 559 249 153 13 chr9 62319595 62319824 -55542803 - LTR50 LTR ERVL 0 795 535 2589 53 0 0 chr9 62320355 62320654 -55541973 + AluY SINE Alu 1 299 -12 389 250 0 23 chr9 62320861 62320949 -55541678 + L2 LINE L2 3169 3254 -18 437 331 37 7 chr9 62321077 62321213 -55541414 + MER91A DNA MER1_type 37 176 -20 520 331 177 15 chr9 62321588 62321984 -55540643 - L2 LINE L2 -9 3304 2845 1922 116 4 8 chr9 62321998 62322265 -55540362 + AluSq SINE Alu 29 294 -19 676 298 146 29 chr9 62323573 62323889 -55538738 + MLT1K LTR MaLR 194 546 -42 195 218 0 36 chr9 62323906 62323961 -55538666 + MIR SINE MIR 95 147 -61 1743 124 69 7 chr9 62324193 62324484 -55538143 - L1MA6 LINE L1 -349 5951 5643 2003 151 19 0 chr9 62324484 62324806 -55537821 + L1MA6 LINE L1 5970 6299 -1 3869 12 0 0 chr9 62324916 62325381 -55537246 - L1PA2 LINE L1 -468 5687 5223 4481 4 0 0 chr9 62325381 62325848 -55536779 + L1PA2 LINE L1 5686 6153 -2 1541 227 62 29 chr9 62326832 62327285 -55535342 + Charlie4a DNA MER1_type 39 506 -2 659 265 30 48 chr9 62327599 62327653 -55534974 + MIR SINE MIR 8 61 -201 2164 153 42 31 chr9 62327653 62327712 -55534915 - MLT1B LTR MaLR 0 390 333 1927 122 0 64 chr9 62327712 62328041 -55534586 - AluSq SINE Alu -5 308 1 2164 153 42 31 chr9 62328041 62328367 -55534260 - MLT1B LTR MaLR -57 333 1 659 265 30 48 chr9 62328367 62328542 -55534085 + MIR SINE MIR 61 233 -29 2087 131 3 0 chr9 62328651 62328948 -55533679 - AluSg SINE Alu -12 298 1 541 248 99 108 chr9 62330520 62330833 -55531794 + MLT1F LTR MaLR 1 310 -232 1188 204 36 59 chr9 62330833 62331247 -55531380 - MLT2B1 LTR ERVL -2 518 179 371 154 15 0 chr9 62331252 62331317 -55531310 - MSTA LTR MaLR 0 428 363 2277 103 27 18 chr9 62331415 62331758 -55530869 - THE1C LTR MaLR -28 429 1 836 199 17 11 chr9 62331760 62331936 -55530691 - MLT2D LTR ERVL -237 177 1 346 220 0 0 chr9 62331941 62332000 -55530627 + MLT1F1 LTR MaLR 381 439 -128 1344 198 0 8 chr9 62332086 62332334 -55530293 - AluJb SINE Alu -66 246 1 439 71 0 0 chr9 62332334 62332390 -55530237 - MER53 DNA DNA -133 56 1 579 214 0 55 chr9 62332391 62332536 -55530091 + MLT1F1 LTR MaLR 431 567 0 507 188 10 0 chr9 62332842 62332943 -55529684 - MER5A DNA MER1_type -84 105 4 267 199 125 44 chr9 62333328 62333464 -55529163 - L1ME4a LINE L1 -5 6116 5970 576 291 32 16 chr9 62334531 62334720 -55527907 + MIR SINE MIR 65 256 -6 2160 110 0 0 chr9 62334726 62335007 -55527620 + AluSc SINE Alu 1 281 -28 29 0 0 0 chr9 62335008 62335037 -55527590 + AT_rich Low_complexity Low_complexity 1 29 0 783 214 66 133 chr9 62335419 62335891 -55526736 + MLT1H LTR MaLR 72 511 -38 2434 63 13 7 chr9 62336141 62336442 -55526185 - AluY SINE Alu -8 303 1 2408 116 30 28 chr9 62337256 62337619 -55525008 + THE1B LTR MaLR 1 364 0 273 57 0 0 chr9 62337985 62338020 -55524607 + (CA)n Simple_repeat Simple_repeat 2 36 0 1856 149 0 10 chr9 62339103 62339392 -55523235 + AluJb SINE Alu 10 295 -17 22 0 0 0 chr9 62339398 62339420 -55523207 + AT_rich Low_complexity Low_complexity 1 22 0 583 316 41 17 chr9 62339448 62339859 -55522768 + L1ME4a LINE L1 5670 6090 -31 1510 172 74 15 chr9 62339890 62340215 -55522412 + MER2 DNA MER2_type 1 344 0 241 270 45 34 chr9 62340607 62340696 -55521931 + MIR SINE MIR 19 108 -100 269 353 53 19 chr9 62340698 62340905 -55521722 - L2 LINE L2 -10 3303 3090 254 188 72 0 chr9 62341019 62341088 -55521539 + MIR3 SINE MIR 95 168 -40 1411 190 93 84 chr9 62341270 62341734 -55520893 + LTR37B LTR ERV1 1 468 0 216 185 0 0 chr9 62341958 62342012 -55520615 + (CA)n Simple_repeat Simple_repeat 1 54 0 241 336 107 32 chr9 62342248 62342410 -55520217 - MIR SINE MIR -60 148 3 225 0 0 0 chr9 62342720 62342745 -55519882 + (CA)n Simple_repeat Simple_repeat 1 25 0 336 246 105 117 chr9 62343405 62344080 -55518547 - L2 LINE L2 -84 3229 2565 680 207 62 0 chr9 62346004 62346149 -55516478 + MER103 DNA DNA 13 166 0 308 284 14 14 chr9 62346222 62346296 -55516331 + L2 LINE L2 3173 3246 -26 * 2459 281 74 7 chr9 62346294 62347320 -55515307 + L2 LINE L2 2216 3311 -2 751 263 111 60 chr9 62347608 62347929 -55514698 + Charlie7 DNA MER1_type 57 360 -2252 1643 175 10 102 chr9 62347929 62348341 -55514286 + MLT1A2 LTR MaLR 1 374 0 751 263 111 60 chr9 62348341 62348367 -55514260 + Charlie7 DNA MER1_type 360 383 -2229 2149 119 19 26 chr9 62348367 62348678 -55513949 + AluSx SINE Alu 1 309 -3 751 263 111 60 chr9 62348678 62348815 -55513812 + Charlie7 DNA MER1_type 383 567 -2045 260 233 23 23 chr9 62348815 62348901 -55513726 + L1MC5 LINE L1 7831 7916 -45 479 237 61 15 chr9 62348943 62349074 -55513553 + Charlie7 DNA MER1_type 581 717 -1895 271 276 37 98 chr9 62349054 62349268 -55513359 + Charlie7 DNA MER1_type 2408 2608 -4 * 26 0 0 0 chr9 62349485 62349511 -55513116 + AT_rich Low_complexity Low_complexity 1 26 0 2165 65 7 38 chr9 62349809 62350130 -55512497 - AluY SINE Alu 0 312 1 1886 150 7 3 chr9 62350660 62350947 -55511680 + AluJb SINE Alu 1 288 -24 1177 118 18 99 chr9 62350953 62351038 -55511589 + L1PA15 LINE L1 5950 6040 -125 2180 119 10 3 chr9 62351038 62351349 -55511278 + AluSq SINE Alu 1 313 0 1177 118 18 99 chr9 62351349 62351484 -55511143 + L1PA15 LINE L1 6040 6152 -13 275 0 29 0 chr9 62351488 62351523 -55511104 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 491 300 107 33 chr9 62351826 62352069 -55510558 + MIR SINE MIR 1 261 -1 835 217 18 69 chr9 62352148 62352594 -55510033 - MLT1D LTR MaLR 0 505 6 2115 126 3 0 chr9 62352658 62352952 -55509675 - AluSx SINE Alu -17 295 1 674 270 116 62 chr9 62355987 62356105 -55506522 + LTR16C LTR ERVL 1 111 -380 2029 147 0 10 chr9 62356105 62356404 -55506223 - AluSx SINE Alu -16 296 1 674 270 116 62 chr9 62356404 62356751 -55505876 + LTR16C LTR ERVL 111 491 0 404 268 256 12 chr9 62359033 62359283 -55503344 - MLT1H LTR MaLR 0 549 239 416 263 18 9 chr9 62359587 62359701 -55502926 - MLT1H LTR MaLR -431 118 4 4827 179 10 13 chr9 62359701 62360496 -55502131 + MER54B LTR ERVL 1 793 0 1180 186 13 1 chr9 62360768 62360995 -55501632 - L1PB1 LINE L1 -218 5945 5712 1517 157 0 8 chr9 62360995 62361235 -55501392 + L1PB1 LINE L1 5911 6150 -1 2088 100 0 28 chr9 62361253 62361565 -55501062 + AluSc SINE Alu 1 304 0 889 305 88 16 chr9 62362169 62362553 -55500074 - L2 LINE L2 -1 3312 2901 374 340 65 31 chr9 62363563 62363857 -55498770 + L1ME LINE L1 5520 5823 -298 186 294 0 0 chr9 62364620 62364671 -55497956 + L2 LINE L2 3179 3229 -84 1338 94 0 0 chr9 62365376 62365546 -55497081 - AluSc SINE Alu -14 295 126 438 315 28 22 chr9 62365560 62365741 -55496886 + MIR SINE MIR 81 262 0 1806 177 39 30 chr9 62368679 62369041 -55493586 - MLT1A1 LTR MaLR 0 365 1 1219 308 90 21 chr9 62369396 62370667 -55491960 + L1ME3A LINE L1 1275 2855 -4267 1833 263 52 20 chr9 62370695 62371334 -55491293 + L1ME3A LINE L1 4451 5109 -1832 2620 253 38 14 chr9 62371395 62372125 -55490502 + L1ME3A LINE L1 6213 6960 -5 351 320 118 6 chr9 62372492 62372670 -55489957 + MIR SINE MIR 8 205 -57 1225 98 0 0 chr9 62372698 62372862 -55489765 + AluSp SINE Alu 146 309 -4 271 250 100 50 chr9 62374151 62374271 -55488356 - L2 LINE L2 -42 3271 3146 2132 119 10 3 chr9 62375097 62375391 -55487236 + AluSp SINE Alu 1 296 -17 437 271 23 43 chr9 62376709 62376917 -55485710 - MIR SINE MIR -41 221 15 194 140 0 40 chr9 62377376 62377426 -55485201 + (TATATG)n Simple_repeat Simple_repeat 2 49 0 573 88 0 0 chr9 62378065 62378145 -55484482 + (TG)n Simple_repeat Simple_repeat 2 81 0 3247 161 50 29 chr9 62378854 62379607 -55483020 - LTR1B LTR ERV1 -2 783 1 288 214 155 89 chr9 62380081 62380249 -55482378 + MLT1K LTR MaLR 374 552 -36 261 176 71 0 chr9 62380662 62380747 -55481880 + (TATATG)n Simple_repeat Simple_repeat 6 96 0 313 165 21 0 chr9 62380966 62381063 -55481564 + (TA)n Simple_repeat Simple_repeat 2 100 0 541 271 63 41 chr9 62381313 62381534 -55481093 - L2 LINE L2 -7 3306 3081 17034 88 10 0 chr9 62381766 62384799 -55477828 - L1PA7 LINE L1 0 6469 3437 14646 111 8 28 chr9 62384904 62388116 -55474511 - L1PA7 LINE L1 -3246 3215 1 230 260 13 52 chr9 62388929 62389006 -55473621 - MIR SINE MIR -70 192 119 1700 176 0 46 chr9 62389332 62389692 -55472935 - AluJb SINE Alu 0 348 4 316 265 25 58 chr9 62390349 62390474 -55472153 - MIR SINE MIR -82 126 5 208 313 45 0 chr9 62391056 62391123 -55471504 - L2 LINE L2 -47 3266 3197 2094 72 0 15 chr9 62391314 62391577 -55471050 + AluY SINE Alu 40 298 -13 369 317 28 14 chr9 62392646 62392791 -55469836 + MIR SINE MIR 5 151 -111 1041 140 1 9 chr9 62394030 62394787 -55467840 + (CAGT)n Simple_repeat Simple_repeat 1 750 0 698 94 10 0 chr9 62394849 62394945 -55467682 + MLT1A1 LTR MaLR 269 365 0 445 207 22 8 chr9 62395247 62395345 -55467282 + L1MC4a LINE L1 5657 5750 -411 472 274 38 52 chr9 62396061 62396273 -55466354 + L1MC4a LINE L1 5729 5937 -1871 4042 145 47 4 chr9 62396674 62397356 -55465271 - MER50 LTR ERV1 -23 711 1 441 258 102 51 chr9 62398011 62398267 -55464360 + Charlie8 DNA MER1_type 1 269 -2148 336 256 67 58 chr9 62398267 62398410 -55464217 - MLT1G LTR MaLR 0 555 408 634 235 178 38 chr9 62398448 62398712 -55463915 - MLT1G LTR MaLR -264 326 26 357 340 53 0 chr9 62399015 62399165 -55463462 - MIR SINE MIR -57 205 48 320 324 216 0 chr9 62399912 62400088 -55462539 - MIR SINE MIR 0 262 49 1159 118 0 0 chr9 62400116 62400285 -55462342 - AluSg/x SINE Alu -1 311 143 1720 65 5 9 chr9 62400290 62400504 -55462123 - AluY SINE Alu -12 299 87 1044 101 0 0 chr9 62400608 62400774 -55461853 + AluY SINE Alu 145 310 0 184 359 92 54 chr9 62401461 62401645 -55460982 - L2 LINE L2 -4 3268 3078 1356 293 56 37 chr9 62402498 62402980 -55459647 - LTR16C LTR ERVL 0 491 1 2235 119 6 0 chr9 62403017 62403328 -55459299 - AluSp SINE Alu 0 313 1 442 229 2 68 chr9 62404857 62405004 -55457623 - MIR SINE MIR -62 146 41 232 234 35 83 chr9 62405209 62405266 -55457361 - L1ME4a LINE L1 -5 6116 6058 2225 122 3 6 chr9 62405266 62405578 -55457049 + AluSx SINE Alu 1 311 -1 232 234 35 83 chr9 62405578 62405665 -55456962 - L1ME4a LINE L1 -63 6058 5979 777 276 223 15 chr9 62405693 62406308 -55456319 + L1M4 LINE L1 3658 4400 -1746 794 199 127 0 chr9 62407635 62407801 -55454826 + MER5A DNA MER1_type 2 188 -1 464 297 8 0 chr9 62407900 62408018 -55454609 + MLT1I LTR MaLR 7 125 -284 1604 160 114 27 chr9 62408085 62408417 -55454210 + MER46B DNA MER2_type 1 236 0 413 212 8 4 chr9 62408417 62408542 -55454085 + MLT1I LTR MaLR 235 407 -2 1092 69 0 0 chr9 62408792 62408922 -55453705 + AluSg/x SINE Alu 170 299 -13 304 287 49 41 chr9 62409409 62409531 -55453096 + L2 LINE L2 3149 3271 -1 686 296 39 35 chr9 62410603 62410914 -55451713 - LTR67 LTR ERVL -10 547 236 445 304 173 7 chr9 62411834 62412117 -55450510 - L3 LINE CR1 -6 1571 1242 352 330 107 52 chr9 62412517 62412826 -55449801 + L2 LINE L2 2916 3241 -31 208 286 16 63 chr9 62412854 62412980 -55449647 - L3 LINE CR1 -377 1200 1081 247 324 87 49 chr9 62414159 62414344 -55448283 + MIR3 SINE MIR 15 206 -2 241 284 27 0 chr9 62414664 62414738 -55447889 + MIR SINE MIR 187 262 0 453 306 120 38 chr9 62415781 62416051 -55446576 - MLT1J2 LTR MaLR -31 419 92 2322 276 23 34 chr9 62416787 62417661 -55444966 + HAL1 LINE L1 985 1848 -659 342 67 0 0 chr9 62417867 62417912 -55444715 + (TG)n Simple_repeat Simple_repeat 2 46 0 5965 157 17 33 chr9 62418077 62419674 -55442953 + pTR5 LTR ERV1 741 2438 0 967 269 17 55 chr9 62419721 62420082 -55442545 + L1MC4a LINE L1 5592 5938 -1870 635 230 20 56 chr9 62420177 62420373 -55442254 + L2 LINE L2 3117 3305 -8 1111 238 162 28 chr9 62421387 62421820 -55440807 + LTR16C LTR ERVL 1 491 0 1858 167 13 7 chr9 62422876 62423176 -55439451 - AluJo SINE Alu -8 304 3 2112 107 11 0 chr9 62424354 62424686 -55437941 + AluSx SINE Alu 1 335 0 1970 151 0 78 chr9 62424775 62425147 -55437480 + MER2 DNA MER2_type 2 344 0 255 273 158 22 chr9 62425682 62425821 -55436806 + MIR SINE MIR 57 214 -48 240 35 0 0 chr9 62425879 62425908 -55436719 + (TTCC)n Simple_repeat Simple_repeat 1 29 0 645 322 108 16 chr9 62425911 62426281 -55436346 + L3 LINE CR1 895 1298 -279 408 331 48 0 chr9 62426303 62426427 -55436200 + MIR SINE MIR 21 150 -58 225 0 0 0 chr9 62426497 62426522 -55436105 + (CA)n Simple_repeat Simple_repeat 2 26 0 402 229 150 20 chr9 62426534 62426687 -55435940 + MER112 DNA MER1_type 79 251 -9 1138 217 34 33 chr9 62427164 62427558 -55435069 - MLT1D LTR MaLR 0 505 78 1986 136 46 75 chr9 62427558 62427903 -55434724 - MER1B DNA MER1_type 0 337 3 1138 217 34 33 chr9 62427903 62427978 -55434649 - MLT1D LTR MaLR -427 78 5 688 206 146 18 chr9 62428237 62428456 -55434171 - LTR16C LTR ERVL -34 457 211 294 284 43 35 chr9 62429870 62430011 -55432616 - MIR SINE MIR -92 170 29 435 38 0 0 chr9 62430144 62430197 -55432430 + (TG)n Simple_repeat Simple_repeat 2 54 0 2259 116 0 0 chr9 62430215 62430517 -55432110 - AluSq SINE Alu -11 302 1 1508 180 55 4 chr9 62430585 62430857 -55431770 + AluJo SINE Alu 1 286 -26 213 39 0 0 chr9 62433042 62433068 -55429559 + (T)n Simple_repeat Simple_repeat 1 26 0 312 271 90 24 chr9 62433243 62433409 -55429218 - LTR33 LTR ERVL -6 515 339 341 197 30 0 chr9 62433414 62433480 -55429147 + MER5A DNA MER1_type 7 74 -115 246 32 0 0 chr9 62433699 62433730 -55428897 + (CA)n Simple_repeat Simple_repeat 2 32 0 * 391 35 17 17 chr9 62433729 62433787 -55428840 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 737 249 103 57 chr9 62434406 62434880 -55427747 - LTR33A LTR ERVL -21 502 7 1380 290 47 20 chr9 62434951 62435502 -55427125 - L1M4 LINE L1 -1074 5072 4507 1236 262 63 83 chr9 62435576 62436271 -55426356 - L1M4 LINE L1 -1808 4338 3658 2505 209 60 30 chr9 62436287 62436890 -55425737 - MLT1E2 LTR MaLR -5 621 1 558 272 67 0 chr9 62437185 62437380 -55425247 + L1ME3A LINE L1 5743 5950 -220 1631 92 5 9 chr9 62437787 62438004 -55424623 + AluSq SINE Alu 87 302 -11 243 234 65 39 chr9 62438048 62438125 -55424502 + MER91C DNA MER1_type 14 92 -48 5021 131 8 13 chr9 62438237 62438995 -55423632 - L1PA13 LINE L1 -5 6158 5405 229 248 132 8 chr9 62439239 62439368 -55423259 + MER103 DNA DNA 11 155 -11 291 352 126 29 chr9 62441028 62441585 -55421042 + L2 LINE L2 2175 2785 -529 611 137 36 95 chr9 62441723 62441891 -55420736 - Charlie5 DNA MER1_type -28 2584 2427 188 347 101 25 chr9 62441971 62442297 -55420330 - L2 LINE L2 -1147 2167 1817 271 224 58 58 chr9 62443376 62443532 -55419095 + L1ME LINE L1 5355 5510 -652 320 274 83 37 chr9 62443655 62443868 -55418759 + HAL1b LINE L1 1204 1201 -147 252 0 0 0 chr9 62443868 62443896 -55418731 + (CA)n Simple_repeat Simple_repeat 1 28 0 320 274 83 37 chr9 62443896 62444027 -55418600 + HAL1b LINE L1 1200 1324 -24 2628 81 5 53 chr9 62444876 62445270 -55417357 + THE1C LTR MaLR 1 375 0 1469 249 91 4 chr9 62445316 62445790 -55416837 - L1ME2 LINE L1 -122 6042 5528 1520 55 0 10 chr9 62495790 62495989 -55366638 + HERVL-A2 LTR ERVL 5458 5654 0 3524 91 27 0 chr9 62495989 62496430 -55366197 + MLT2A2 LTR ERVL 1 453 0 1284 161 36 5 chr9 62496430 62496653 -55365974 + L1PA15 LINE L1 5931 6160 -5 457 195 57 24 chr9 62498240 62498363 -55364264 - MER115 DNA AcHobo -2 691 565 278 273 40 20 chr9 62498477 62498576 -55364051 + MER5B DNA MER1_type 7 107 -71 3616 70 0 13 chr9 62498778 62499232 -55363395 - LTR7 LTR ERV1 -2 448 1 502 183 103 40 chr9 62499232 62499358 -55363269 - MLT1C LTR MaLR -333 134 1 312 172 0 0 chr9 62499540 62499598 -55363029 + (TA)n Simple_repeat Simple_repeat 2 59 0 22 0 0 0 chr9 62500212 62500234 -55362393 + AT_rich Low_complexity Low_complexity 1 22 0 298 73 24 0 chr9 62500546 62500587 -55362040 + MSTD LTR MaLR 1 42 -354 938 269 39 18 chr9 62500768 62501103 -55361524 + LTR16A LTR ERVL 109 450 0 1545 112 119 61 chr9 62501201 62501478 -55361149 + AluSq SINE Alu 1 293 -20 22967 72 2 3 chr9 62501583 62504422 -55358205 - HERVL LTR ERVL -342 5312 2478 899 164 71 11 chr9 62504592 62504775 -55357852 + L1PA15 LINE L1 5742 5935 -230 3391 99 27 11 chr9 62504775 62505221 -55357406 + MLT2A2 LTR ERVL 1 453 0 19332 72 3 3 chr9 62505224 62505749 -55356878 + HERVL-A2 LTR ERVL 4 527 -5127 2270 110 0 0 chr9 62505749 62506049 -55356578 - AluSg SINE Alu -10 300 1 19332 72 3 3 chr9 62506049 62507937 -55354690 + HERVL-A2 LTR ERVL 527 2418 -3236 1848 231 64 56 chr9 62508083 62508162 -55354465 + L1ME2 LINE L1 5127 5204 -958 1869 155 30 3 chr9 62508162 62508466 -55354161 + AluSx SINE Alu 1 312 0 1848 231 64 56 chr9 62508466 62508513 -55354114 + L1ME2 LINE L1 5204 5249 -913 342 0 0 0 chr9 62508513 62508551 -55354076 + (CA)n Simple_repeat Simple_repeat 2 39 0 1848 231 64 56 chr9 62508551 62509106 -55353521 + L1ME2 LINE L1 5249 5811 -351 1103 124 32 0 chr9 62509106 62509291 -55353336 + L1MA4 LINE L1 6110 6300 0 1848 231 64 56 chr9 62509291 62509407 -55353220 + L1ME2 LINE L1 5811 5924 -238 301 48 24 0 chr9 62509421 62509463 -55353164 - MADE1 DNA Mariner -37 43 1 268 173 0 0 chr9 62509465 62509517 -55353110 + L1ME2 LINE L1 5927 5978 -186 1848 91 0 0 chr9 62509517 62509747 -55352880 + AluSq SINE Alu 1 230 -83 742 212 19 66 chr9 62509783 62509995 -55352632 + L1ME2 LINE L1 5963 6164 0 804 224 76 22 chr9 62510053 62510330 -55352297 + Charlie2 DNA MER1_type 1856 2147 -715 2414 76 5 65 chr9 62510447 62510817 -55351810 - L1PA8A LINE L1 0 6131 5784 2324 49 39 39 chr9 62511831 62512138 -55350489 + AluY SINE Alu 1 307 -4 2188 130 3 0 chr9 62513390 62513697 -55348930 + AluSx SINE Alu 1 308 -4 2176 118 3 13 chr9 62513917 62514232 -55348395 + AluSx SINE Alu 1 312 0 1865 101 42 42 chr9 62515481 62515791 -55346836 + AluY SINE Alu 14 311 0 360 167 78 67 chr9 62515987 62516077 -55346550 + MLT2B1 LTR ERVL 1 91 -429 432 0 0 0 chr9 62516154 62516202 -55346425 + (CA)n Simple_repeat Simple_repeat 1 48 0 234 326 34 0 chr9 62516227 62516316 -55346311 + L1ME LINE L1 5527 5618 -503 258 129 0 0 chr9 62516328 62516369 -55346258 + MIR SINE MIR 114 153 -109 416 314 69 23 chr9 62516743 62516918 -55345709 - MIR SINE MIR -60 202 20 346 270 71 32 chr9 62517046 62517172 -55345455 - L2 LINE L2 0 3313 3183 538 210 34 8 chr9 62517345 62517464 -55345163 + L1M4c LINE L1 416 537 -5766 * 2147 223 42 26 chr9 62517453 62518152 -55344475 + L1M4c LINE L1 2298 3010 -3372 823 142 0 64 chr9 62518154 62518474 -55344153 + FLAM_C SINE Alu 6 316 0 273 267 84 46 chr9 62519004 62519135 -55343492 - L2 LINE L2 -3 3310 3175 1907 124 10 28 chr9 62519387 62519678 -55342949 + AluSx SINE Alu 1 286 -26 565 77 39 23 chr9 62519776 62519906 -55342721 + (CATAT)n Simple_repeat Simple_repeat 2 133 0 248 288 33 72 chr9 62520272 62520425 -55342202 - MLT1H LTR MaLR 0 542 396 * 306 310 9 9 chr9 62520421 62520534 -55342093 - MLT1H LTR MaLR -339 210 98 2580 49 0 3 chr9 62520680 62520984 -55341643 + AluY SINE Alu 1 303 -8 732 210 233 0 chr9 62521500 62521676 -55340951 + MER58A DNA MER1_type 1 217 -7 11482 172 126 14 chr9 62521689 62525014 -55337613 + L1PBa LINE L1 1 3696 -3166 294 122 0 0 chr9 62525114 62525155 -55337472 - L1P4 LINE L1 -381 5784 5744 224 299 0 0 chr9 62525480 62525547 -55337080 + CT-rich Low_complexity Low_complexity 6 72 0 823 169 17 35 chr9 62526852 62527024 -55335603 - MER58 DNA MER1_type -145 196 28 795 264 11 6 chr9 62527483 62527665 -55334962 + MER58A DNA MER1_type 42 224 0 877 321 43 7 chr9 62527795 62528100 -55334527 - ERVL LTR ERVL -3334 2430 2115 289 300 112 0 chr9 62528202 62528357 -55334270 - ERVL LTR ERVL -3718 1941 1766 1255 268 66 42 chr9 62528372 62528873 -55333754 + MER74B LTR ERVL 56 568 -54 500 336 93 10 chr9 62529196 62529508 -55333119 - ERVL LTR ERVL -4259 1395 1058 568 103 0 0 chr9 62529508 62529586 -55333041 + AluY SINE Alu 160 237 -74 198 0 0 0 chr9 62529600 62529622 -55333005 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 638 297 31 5 chr9 62529887 62530082 -55332545 - LTR67 LTR ERVL -1 556 357 825 330 89 14 chr9 62530675 62531112 -55331515 - L3 LINE CR1 -10 1567 1098 2456 135 40 40 chr9 62531854 62532328 -55330299 - LTR1 LTR ERV1 -296 489 16 1718 148 14 7 chr9 62532341 62532632 -55329995 - L1MC1 LINE L1 -270 6063 5771 2166 132 0 0 chr9 62532648 62532952 -55329675 + AluSx SINE Alu 1 304 -8 1623 211 92 10 chr9 62533082 62533643 -55328984 - MLT2F LTR ERVL -10 653 1 367 313 139 46 chr9 62533645 62533904 -55328723 - L1MEd LINE L1 -5598 521 239 225 108 0 0 chr9 62534147 62534184 -55328443 + (CA)n Simple_repeat Simple_repeat 2 38 0 1959 135 0 27 chr9 62535090 62535387 -55327240 - AluSx SINE Alu -23 289 1 570 281 109 30 chr9 62535401 62535703 -55326924 - HAL1b LINE L1 -49 1299 974 318 314 74 78 chr9 62536194 62536436 -55326191 - HAL1 LINE L1 -2266 241 1 295 288 136 0 chr9 62537172 62537297 -55325330 + LTR33 LTR ERVL 380 521 0 28 61 0 0 chr9 62537302 62537351 -55325276 + AT_rich Low_complexity Low_complexity 1 49 0 285 263 105 44 chr9 62537840 62537954 -55324673 + L2 LINE L2 3148 3268 -4 216 184 61 0 chr9 62539255 62539304 -55323323 + GA-rich Low_complexity Low_complexity 4 55 0 29 28 0 0 chr9 62539912 62539948 -55322679 + AT_rich Low_complexity Low_complexity 1 36 0 252 222 0 0 chr9 62540146 62540200 -55322427 - L1MC4 LINE L1 -1340 6702 6649 * 404 241 140 43 chr9 62540190 62540277 -55322350 - HAL1 LINE L1 -165 2342 2265 904 219 161 45 chr9 62540277 62540675 -55321952 - MLT1J1 LTR MaLR 0 446 3 404 241 140 43 chr9 62540675 62540844 -55321783 - HAL1 LINE L1 -242 2265 2061 744 235 56 0 chr9 62541105 62541301 -55321326 - HAL1 LINE L1 -802 1705 1499 3122 250 122 35 chr9 62541981 62543670 -55318957 - L2 LINE L2 -127 3186 1353 568 273 52 21 chr9 62544371 62544565 -55318062 - MIR SINE MIR -56 206 7 318 286 63 8 chr9 62544566 62544692 -55317935 + MIR SINE MIR 109 241 -21 352 285 32 8 chr9 62545213 62545336 -55317291 + MIR SINE MIR 24 149 -113 316 200 140 87 chr9 62545404 62545554 -55317073 + MER103 DNA DNA 2 159 -7 27 29 0 0 chr9 62545626 62545660 -55316967 + AT_rich Low_complexity Low_complexity 1 34 0 570 15 0 0 chr9 62545856 62545923 -55316704 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 213 224 30 15 chr9 62545927 62545994 -55316633 + (TA)n Simple_repeat Simple_repeat 1 68 0 2769 111 5 11 chr9 62546436 62546813 -55315814 - THE1C LTR MaLR 0 375 1 6863 133 11 10 chr9 62546813 62547850 -55314777 - THE1C-int LTR MaLR 0 1580 543 595 212 25 0 chr9 62548003 62548121 -55314506 - MIR SINE MIR -136 126 6 1922 150 38 52 chr9 62549310 62549520 -55313107 - MLT1A1 LTR MaLR 0 365 161 2210 121 7 0 chr9 62549520 62549827 -55312800 - AluSx SINE Alu -1 311 3 1922 150 38 52 chr9 62549827 62549983 -55312644 - MLT1A1 LTR MaLR -204 161 4 256 67 0 0 chr9 62550452 62550482 -55312145 + U6 snRNA snRNA 1 30 -77 186 133 0 0 chr9 62551309 62551339 -55311288 + (CCA)n Simple_repeat Simple_repeat 1 30 0 478 294 98 14 chr9 62552052 62552195 -55310432 - L2 LINE L2 -2 3270 3116 295 268 14 0 chr9 62556462 62556533 -55306094 + CT-rich Low_complexity Low_complexity 3 74 0 1390 284 82 2 chr9 62558332 62558748 -55303879 + LTR16C LTR ERVL 43 491 0 466 294 113 51 chr9 62558874 62559245 -55303382 + MLT1L LTR MaLR 1 394 -221 220 262 48 48 chr9 62559465 62559568 -55303059 + L2 LINE L2 3117 3219 -94 689 225 125 62 chr9 62560310 62560550 -55302077 - MIR SINE MIR 0 262 8 228 266 77 89 chr9 62560778 62560947 -55301680 + L2 LINE L2 2888 3054 -259 234 189 38 0 chr9 62561412 62561465 -55301162 + L2 LINE L2 2291 2345 -969 364 255 92 121 chr9 62561551 62561955 -55300672 + MLT1L LTR MaLR 100 593 -20 442 341 91 62 chr9 62561972 62562292 -55300335 + L2 LINE L2 2349 2658 -614 410 0 20 0 chr9 62562292 62562342 -55300285 + (CA)n Simple_repeat Simple_repeat 2 52 0 442 341 91 62 chr9 62562342 62562902 -55299725 + L2 LINE L2 2658 3272 0 2109 134 0 0 chr9 62563048 62563347 -55299280 - AluSc SINE Alu -10 299 1 2082 120 3 10 chr9 62564115 62564407 -55298220 + AluSq SINE Alu 1 290 -23 387 307 31 8 chr9 62564441 62564568 -55298059 + MIR3 SINE MIR 34 163 -45 342 289 100 64 chr9 62567452 62567701 -55294926 + L1MD2 LINE L1 5259 5516 -605 307 200 94 71 chr9 62568052 62568085 -55294542 + L1ME4a LINE L1 5936 5967 -154 7002 140 57 8 chr9 62568085 62569255 -55293372 + Tigger3b DNA MER2_type 4 1230 -1 307 200 94 71 chr9 62569255 62569391 -55293236 + L1ME4a LINE L1 5967 6109 -12 216 371 22 0 chr9 62569994 62570083 -55292544 + MIR SINE MIR 51 141 -67 3580 197 40 18 chr9 62570656 62570905 -55291722 + L1MD2 LINE L1 5494 5736 -623 1858 160 13 7 chr9 62570905 62571212 -55291415 + AluJb SINE Alu 1 309 -3 3580 197 40 18 chr9 62571212 62571702 -55290925 + L1MD2 LINE L1 5736 6250 -109 351 219 0 0 chr9 62572261 62572325 -55290302 + LTR16C LTR ERVL 418 481 -10 2363 101 3 0 chr9 62572592 62572899 -55289728 + AluSp SINE Alu 1 308 -5 706 217 0 0 chr9 62573184 62573313 -55289314 + MER8 DNA MER2_type 1 129 -110 339 260 16 65 chr9 62573560 62573683 -55288944 + MIR3 SINE MIR 86 202 -6 204 322 0 0 chr9 62573734 62573793 -55288834 - L2 LINE L2 0 3272 3214 2497 227 129 24 chr9 62574808 62575411 -55287216 + L1ME1 LINE L1 4642 5180 -986 1855 133 0 28 chr9 62575411 62575697 -55286930 + AluSx SINE Alu 35 312 0 2497 227 129 24 chr9 62575697 62576447 -55286180 + L1ME1 LINE L1 5180 6158 -8 2001 149 0 0 chr9 62576637 62576918 -55285709 + AluSx SINE Alu 1 281 -31 354 23 0 0 chr9 62576919 62576962 -55285665 + (CA)n Simple_repeat Simple_repeat 2 44 0 1189 267 117 22 chr9 62577008 62577502 -55285125 - L1ME3A LINE L1 -215 5955 5415 270 0 0 0 chr9 62577660 62577690 -55284937 + (CA)n Simple_repeat Simple_repeat 2 31 0 480 48 0 0 chr9 62579177 62579240 -55283387 + (CA)n Simple_repeat Simple_repeat 1 63 0 417 342 37 12 chr9 62579312 62579473 -55283154 - MIR3 SINE MIR -23 185 21 698 279 41 20 chr9 62579879 62580123 -55282504 - MIR SINE MIR -12 250 2 298 248 69 76 chr9 62580196 62580248 -55282379 + MIR3 SINE MIR 43 94 -114 2939 204 53 22 chr9 62580248 62580835 -55281792 + MER77 LTR ERV1 1 605 0 298 248 69 76 chr9 62580835 62580927 -55281700 + MIR3 SINE MIR 94 186 -22 1593 261 50 7 chr9 62581127 62581586 -55281041 + MLT1J LTR MaLR 26 504 -7 182 245 64 117 chr9 62582100 62582194 -55280433 + L2 LINE L2 3146 3234 -38 180 242 61 30 chr9 62582176 62582242 -55280385 + MIR3 SINE MIR 6 73 -135 * 754 260 43 8 chr9 62582274 62582509 -55280118 - MIR SINE MIR -19 243 1 407 299 31 8 chr9 62582663 62582790 -55279837 - MIR SINE MIR -113 149 20 850 145 14 21 chr9 62583609 62583754 -55278873 + AluJo SINE Alu 10 153 -159 3681 112 81 81 chr9 62583861 62584566 -55278061 - THE1C-int LTR MaLR -875 705 1 2801 101 11 11 chr9 62584566 62584941 -55277686 - THE1C LTR MaLR 0 375 1 25 0 0 0 chr9 62584981 62585006 -55277621 + AT_rich Low_complexity Low_complexity 1 25 0 2107 134 58 9 chr9 62585065 62585393 -55277234 - MER7A DNA MER2_type -1 345 4 483 263 130 33 chr9 62585934 62586265 -55276362 - L1ME4a LINE L1 -11 6110 5748 313 219 143 25 chr9 62586384 62586503 -55276124 - L1ME4a LINE L1 0 6121 5989 2757 127 20 0 chr9 62586641 62587115 -55275512 - MER1A DNA MER1_type -6 523 2 227 225 0 0 chr9 62587235 62587275 -55275352 - U6 snRNA snRNA -67 40 1 1908 226 60 29 chr9 62587383 62587470 -55275157 - HsTC2c DNA Tc2 -1233 665 582 2480 58 0 6 chr9 62587470 62587781 -55274846 - AluY SINE Alu -2 309 1 1908 226 60 29 chr9 62587781 62588175 -55274452 - HsTC2c DNA Tc2 -1316 582 169 1830 155 29 19 chr9 62588437 62588746 -55273881 + AluJb SINE Alu 1 312 0 37 23 0 0 chr9 62588991 62589035 -55273592 + AT_rich Low_complexity Low_complexity 1 44 0 478 298 72 56 chr9 62589827 62590273 -55272354 - L1ME4a LINE L1 -297 5824 5361 27 29 0 0 chr9 62590300 62590334 -55272293 + AT_rich Low_complexity Low_complexity 1 34 0 382 312 134 13 chr9 62590648 62590962 -55271665 - L1ME4a LINE L1 -2134 4012 3661 274 235 144 102 chr9 62591091 62591434 -55271193 + L1ME3A LINE L1 5592 5951 -211 322 160 0 0 chr9 62591505 62591555 -55271072 + 5S rRNA rRNA 1 50 -71 302 348 50 7 chr9 62591600 62591741 -55270886 + L1ME3A LINE L1 5988 6134 -36 801 228 153 7 chr9 62591754 62592047 -55270580 - MLT1C LTR MaLR -2 465 132 3836 51 0 2 chr9 62592051 62592500 -55270127 - LTR7 LTR ERV1 -2 448 1 32896 62 2 23 chr9 62592500 62596815 -55265812 - HERVH LTR ERV1 0 7713 3492 17132 93 83 13 chr9 62596805 62599429 -55263198 - HERVH LTR ERV1 -4423 3290 483 * 1691 96 4 0 chr9 62599429 62599680 -55262947 - HERVH LTR ERV1 -6982 731 480 9535 184 18 1 chr9 62599785 62600969 -55261658 + L1PB1 LINE L1 3204 4367 -1784 704 22 11 0 chr9 62600969 62601059 -55261568 + (CAATA)n Simple_repeat Simple_repeat 1 91 0 9535 184 18 1 chr9 62601059 62602774 -55259853 + L1PB1 LINE L1 4367 6150 -1 1259 244 142 6 chr9 62602980 62603301 -55259326 - MLT1I LTR MaLR -6 403 28 198 0 0 0 chr9 62603301 62603323 -55259304 + (GA)n Simple_repeat Simple_repeat 1 22 0 1259 244 142 6 chr9 62603323 62603354 -55259273 - MLT1I LTR MaLR -381 28 3 1301 134 21 25 chr9 62604312 62604550 -55258077 - AluSg/x SINE Alu -3 309 73 216 271 0 0 chr9 62604714 62604762 -55257865 + L2 LINE L2 3264 3311 -2 1651 126 76 14 chr9 62606515 62606792 -55255835 + AluSx SINE Alu 1 294 -18 368 141 192 0 chr9 62607282 62607360 -55255267 - LTR67 LTR ERVL -7 550 458 1804 136 3 27 chr9 62607456 62607793 -55254834 - AluJb SINE Alu 0 330 1 1353 205 67 98 chr9 62608070 62608591 -55254036 - MLT1D LTR MaLR 0 505 1 31380 111 13 61 chr9 62609557 62616016 -55246611 - L1PA7 LINE L1 0 6154 12 855 252 44 65 chr9 62616418 62616876 -55245751 + MLT1J LTR MaLR 4 509 -2 190 289 96 48 chr9 62617624 62617707 -55244920 - MIR SINE MIR -137 125 39 2199 101 0 3 chr9 62618690 62618996 -55243631 - AluSg SINE Alu 0 310 6 1069 274 73 24 chr9 62619451 62619944 -55242683 + LTR33 LTR ERVL 1 517 -4 604 259 0 0 chr9 62622404 62622551 -55240076 - L1MB7 LINE L1 -16 6168 6022 2056 117 0 0 chr9 62622568 62622858 -55239769 - AluSg SINE Alu -20 290 1 393 255 222 7 chr9 62622997 62623150 -55239477 + MIR SINE MIR 49 234 -28 391 353 20 25 chr9 62624042 62624209 -55238418 + MER5A DNA MER1_type 8 185 -4 2361 74 0 3 chr9 62624524 62624836 -55237791 + AluY SINE Alu 1 311 0 1350 251 55 11 chr9 62624839 62625218 -55237409 - MLT1C LTR MaLR 0 467 72 296 211 0 0 chr9 62625906 62625958 -55236669 - MLT1H LTR MaLR -2 547 496 541 235 139 18 chr9 62625967 62626133 -55236494 + MER58C DNA MER1_type 27 212 -3 1576 229 97 60 chr9 62626133 62626618 -55236009 - MLT1H LTR MaLR -46 503 1 222 361 0 0 chr9 62627334 62627395 -55235232 - L3 LINE CR1 -89 1488 1428 606 281 114 53 chr9 62627946 62628401 -55234226 + MLT1J LTR MaLR 26 508 -3 1022 215 175 28 chr9 62628401 62628656 -55233971 - MSTD LTR MaLR 0 396 81 1757 118 93 4 chr9 62628656 62628935 -55233692 - AluSx SINE Alu -8 304 1 1022 215 175 28 chr9 62628935 62629005 -55233622 - MSTD LTR MaLR -315 81 23 260 276 41 20 chr9 62629106 62629204 -55233423 + L1 LINE L1 2677 2776 -3370 479 198 0 74 chr9 62629204 62629325 -55233302 + FLAM_C SINE Alu 6 117 -26 506 153 17 17 chr9 62629325 62629443 -55233184 + GA-rich Low_complexity Low_complexity 1 118 0 9614 177 42 15 chr9 62629447 62631570 -55231057 + L1 LINE L1 2769 4948 -1198 1426 203 14 14 chr9 62631623 62631909 -55230718 + AluJo SINE Alu 6 291 -21 623 209 43 0 chr9 62631910 62632049 -55230578 + L1 LINE L1 4984 5128 -1018 615 147 0 0 chr9 62632049 62632144 -55230483 + L1MB1 LINE L1 6071 6165 -3 900 164 57 0 chr9 62632149 62632308 -55230319 - MSTB LTR MaLR -48 378 211 518 262 192 59 chr9 62632483 62633017 -55229610 - L2 LINE L2 -558 2756 2097 345 24 0 0 chr9 62633570 62633612 -55229015 + (CA)n Simple_repeat Simple_repeat 2 43 0 382 313 52 107 chr9 62634260 62634484 -55228143 - L2 LINE L2 -13 3259 3053 2024 188 91 2 chr9 62634484 62634947 -55227680 + MLT1D LTR MaLR 1 504 -1 382 313 52 107 chr9 62634947 62635013 -55227614 - L2 LINE L2 -219 3053 2985 791 201 175 104 chr9 62635201 62635577 -55227050 - MLT1H LTR MaLR -2 547 138 2322 116 14 77 chr9 62635577 62635811 -55226816 - MLT1B LTR MaLR 0 390 192 2276 89 0 10 chr9 62635811 62636125 -55226502 - AluSp SINE Alu -2 311 1 2322 116 14 77 chr9 62636125 62636305 -55226322 - MLT1B LTR MaLR -198 192 2 791 201 175 104 chr9 62636305 62636340 -55226287 - MLT1H LTR MaLR -411 138 107 545 179 113 0 chr9 62636601 62636707 -55225920 - MLT1G LTR MaLR -2 553 436 2201 99 0 0 chr9 62636751 62637045 -55225582 - AluSx SINE Alu -18 294 1 1061 176 0 11 chr9 62637055 62637231 -55225396 - FAM SINE Alu 0 175 2 266 258 37 18 chr9 62637238 62637334 -55225293 - MLT1H LTR MaLR -335 214 76 851 288 78 3 chr9 62637817 62638136 -55224491 - LTR16C LTR ERVL -81 410 68 307 262 90 62 chr9 62638321 62638353 -55224274 - HAL1 LINE L1 -38 2469 2439 1570 158 18 4 chr9 62638353 62638625 -55224002 + AluJb SINE Alu 5 280 -32 189 0 0 0 chr9 62638625 62638646 -55223981 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 307 262 90 62 chr9 62638646 62638757 -55223870 - HAL1 LINE L1 -67 2440 2321 24 53 0 0 chr9 62638888 62638926 -55223701 + AT_rich Low_complexity Low_complexity 1 38 0 505 303 68 0 chr9 62639110 62639272 -55223355 - MIR SINE MIR -54 208 36 1572 197 10 61 chr9 62639310 62639721 -55222906 + MLT1B LTR MaLR 1 390 0 239 257 27 14 chr9 62639722 62639796 -55222831 + GA-rich Low_complexity Low_complexity 5 79 0 1120 253 69 20 chr9 62640833 62641241 -55221386 - LTR16C LTR ERVL -2 489 62 749 244 59 14 chr9 62642663 62643017 -55219610 - MLT1G LTR MaLR -239 351 1 1036 182 33 14 chr9 62643792 62644006 -55218621 + MER58A DNA MER1_type 7 224 0 359 253 147 27 chr9 62644853 62644911 -55217716 + MIR SINE MIR 66 116 -146 1932 119 67 0 chr9 62644911 62645225 -55217402 - AluJb SINE Alu 0 312 1 359 253 147 27 chr9 62645225 62645316 -55217311 + MIR SINE MIR 116 233 -29 384 246 42 42 chr9 62645714 62645856 -55216771 + MIR3 SINE MIR 32 173 -35 398 241 20 4 chr9 62646890 62647145 -55215482 + (CA)n Simple_repeat Simple_repeat 1 259 0 480 217 26 111 chr9 62647250 62647439 -55215188 + MLT1K LTR MaLR 414 586 -2 2156 118 3 3 chr9 62647537 62647842 -55214785 + AluSg SINE Alu 1 305 -5 2484 90 3 0 chr9 62647879 62648191 -55214436 + AluSq SINE Alu 1 313 0 327 203 0 0 chr9 62648191 62648255 -55214372 + L1MB8 LINE L1 6105 6168 -10 2358 102 0 0 chr9 62649694 62649998 -55212629 + AluSx SINE Alu 1 304 -8 206 300 0 0 chr9 62650034 62650074 -55212553 + (TCCA)n Simple_repeat Simple_repeat 1 40 0 252 0 0 0 chr9 62650098 62650126 -55212501 + (TGGA)n Simple_repeat Simple_repeat 1 28 0 248 230 40 81 chr9 62652379 62652413 -55210214 + L1MC4 LINE L1 7901 7935 -107 2462 57 3 7 chr9 62652413 62652709 -55209918 + AluY SINE Alu 1 295 -16 248 230 40 81 chr9 62652709 62652822 -55209805 + L1MC4 LINE L1 7935 8042 0 330 256 193 34 chr9 62653061 62653299 -55209328 + L1MC4a LINE L1 5561 5836 -1972 392 194 0 74 chr9 62654327 62654435 -55208192 + MER5A DNA MER1_type 1 100 -89 343 318 0 9 chr9 62654496 62654603 -55208024 - MLT1J LTR MaLR -306 205 100 342 205 0 0 chr9 62654638 62654716 -55207911 + (CA)n Simple_repeat Simple_repeat 2 79 0 712 244 170 62 chr9 62655304 62655805 -55206822 - MLT1H1 LTR MaLR 0 555 1 289 289 89 11 chr9 62655805 62655895 -55206732 - MIR SINE MIR -62 146 50 551 307 147 17 chr9 62656456 62656749 -55205878 + MLT1J LTR MaLR 1 331 -180 698 270 56 15 chr9 62656882 62657078 -55205549 + MLT1I LTR MaLR 206 409 0 696 312 86 20 chr9 62657292 62657584 -55205043 - LTR16C LTR ERVL -170 321 11 276 327 154 19 chr9 62657746 62657960 -55204667 + L2 LINE L2 2856 3098 -174 1279 174 86 99 chr9 62658614 62658976 -55203651 + MLT1A1 LTR MaLR 1 357 -8 377 307 84 0 chr9 62659394 62659573 -55203054 - MIR SINE MIR -3 259 66 185 0 40 0 chr9 62660115 62660140 -55202487 + (CA)n Simple_repeat Simple_repeat 2 27 0 1084 214 69 68 chr9 62662823 62663364 -55199263 - MLT1E2 LTR MaLR 0 626 32 1553 167 59 0 chr9 62663364 62663670 -55198957 - L1MA4 LINE L1 0 6300 5977 1084 214 69 68 chr9 62663670 62663703 -55198924 - MLT1E2 LTR MaLR -594 32 1 274 341 33 42 chr9 62663848 62664062 -55198565 + MIR SINE MIR 20 231 -31 338 314 34 80 chr9 62664094 62664358 -55198269 + L2 LINE L2 3012 3263 -9 803 284 100 4 chr9 62664736 62664975 -55197652 - LTR40a LTR ERVL -255 264 3 696 242 114 106 chr9 62665013 62665409 -55197218 - MLT1J LTR MaLR -3 508 110 661 218 3 14 chr9 62665765 62666139 -55196488 + (CA)n Simple_repeat Simple_repeat 1 369 0 190 247 99 31 chr9 62668007 62668169 -55194458 + L2 LINE L2 2695 2867 -447 247 344 44 33 chr9 62668394 62668484 -55194143 + L2 LINE L2 3118 3208 -64 377 241 45 27 chr9 62669155 62669267 -55193360 + MIR3 SINE MIR 81 194 -14 243 0 0 0 chr9 62669290 62669317 -55193310 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1771 160 11 18 chr9 62669323 62669605 -55193022 - AluSx SINE Alu -32 280 1 440 329 53 13 chr9 62669661 62669886 -55192741 - MIR SINE MIR -9 253 20 190 400 41 0 chr9 62671477 62671622 -55191005 + MIR SINE MIR 45 195 -67 2045 126 0 11 chr9 62672984 62673302 -55189325 - AluSx SINE Alu 0 315 1 528 185 294 7 chr9 62675515 62675661 -55186966 + MER5A DNA MER1_type 2 189 0 2063 127 6 16 chr9 62675940 62676254 -55186373 - AluSx SINE Alu -1 311 1 22 0 0 0 chr9 62676394 62676416 -55186211 + AT_rich Low_complexity Low_complexity 1 22 0 1295 198 79 33 chr9 62676537 62676647 -55185980 - MER2 DNA MER2_type 0 345 241 622 188 0 55 chr9 62676647 62676775 -55185852 + FLAM_A SINE Alu 1 121 -12 1295 198 79 33 chr9 62676775 62676993 -55185634 - MER2 DNA MER2_type -104 241 2 35 63 0 0 chr9 62677063 62677126 -55185501 + AT_rich Low_complexity Low_complexity 1 63 0 21 0 0 0 chr9 62677574 62677595 -55185032 + AT_rich Low_complexity Low_complexity 1 21 0 2324 70 0 3 chr9 62677653 62677937 -55184690 + AluSc SINE Alu 1 283 -26 213 65 0 0 chr9 62677940 62677971 -55184656 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2222 108 17 10 chr9 62678287 62678584 -55184043 - AluSx SINE Alu -13 299 1 2344 104 3 0 chr9 62680826 62681135 -55181492 - AluSx SINE Alu -2 310 1 231 36 0 0 chr9 62682355 62682383 -55180244 + (GA)n Simple_repeat Simple_repeat 1 28 0 251 353 59 0 chr9 62682731 62682901 -55179726 + L2 LINE L2 2216 2395 -919 2030 137 137 0 chr9 62683043 62683385 -55179242 + MSTB LTR MaLR 1 389 -37 201 186 0 23 chr9 62683708 62683751 -55178876 + L2 LINE L2 3222 3263 -9 309 301 62 51 chr9 62684648 62684824 -55177803 + MIR SINE MIR 21 198 -64 26 0 0 0 chr9 62685183 62685209 -55177418 + AT_rich Low_complexity Low_complexity 1 26 0 1640 156 159 6 chr9 62685440 62685755 -55176872 + MER47A DNA MER2_type 4 366 0 287 314 71 29 chr9 62685960 62686100 -55176527 + MIR SINE MIR 20 165 -97 971 154 30 6 chr9 62686171 62686340 -55176287 - MER68 LTR ERV1 -2 560 388 1167 274 130 36 chr9 62686770 62687478 -55175149 + L1MCc LINE L1 1213 1853 -5088 2244 102 0 3 chr9 62687478 62687771 -55174856 + AluSc SINE Alu 1 292 -17 1167 274 130 36 chr9 62687771 62688119 -55174508 + L1MCc LINE L1 1853 2167 -4774 977 177 27 5 chr9 62688119 62688305 -55174322 + L1PA13 LINE L1 5970 6159 -4 1167 274 130 36 chr9 62688305 62689193 -55173434 + L1MCc LINE L1 2167 3506 -3435 2024 127 64 14 chr9 62690314 62690660 -55171967 + L1MB5 LINE L1 5812 6174 0 2020 136 0 17 chr9 62690784 62691079 -55171548 - AluJb SINE Alu -22 290 1 326 279 14 75 chr9 62691521 62691668 -55170959 + HAL1 LINE L1 2 139 -2368 3176 125 48 16 chr9 62691754 62692250 -55170377 + MER41E LTR ERV1 1 512 0 347 359 28 7 chr9 62692395 62692537 -55170090 + HAL1 LINE L1 251 395 -2112 744 269 45 37 chr9 62692874 62693250 -55169377 + L1MEc LINE L1 1059 1478 -4918 2023 89 29 83 chr9 62693250 62693563 -55169064 + AluSg SINE Alu 1 296 -14 744 269 45 37 chr9 62693563 62693729 -55168898 + L1MEc LINE L1 1478 1641 -4755 1958 112 0 0 chr9 62693994 62694253 -55168374 - AluSg1 SINE Alu -13 296 38 501 202 235 5 chr9 62694358 62694571 -55168056 + L1MEc LINE L1 2127 2388 -4008 7918 62 18 43 chr9 62694791 62695864 -55166763 + SVA Other Other 339 1384 -2 2237 114 0 0 chr9 62696091 62696388 -55166239 - AluSx SINE Alu -15 297 1 2030 118 0 21 chr9 62696753 62697041 -55165586 - AluSx SINE Alu -30 282 1 1157 188 19 83 chr9 62697078 62697402 -55165225 - Charlie4a DNA MER1_type -1 507 205 304 50 17 67 chr9 62697776 62697836 -55164791 + (TCTCCC)n Simple_repeat Simple_repeat 3 59 0 1979 152 11 33 chr9 62698111 62698473 -55164154 + MLT1A1 LTR MaLR 12 365 0 2816 212 136 66 chr9 62698473 62699772 -55162855 + MLT1A1-int LTR MaLR 1 1609 -126 2058 167 18 0 chr9 62699772 62700113 -55162514 + MER7A DNA MER2_type 1 345 -1 2816 212 136 66 chr9 62700113 62700246 -55162381 + MLT1A1-int LTR MaLR 1609 1731 -4 989 200 22 5 chr9 62700271 62700456 -55162171 + MLT1A1 LTR MaLR 178 365 0 1942 141 3 35 chr9 62701543 62701855 -55160772 + AluJo SINE Alu 1 302 -10 2106 135 0 3 chr9 62702614 62702917 -55159710 + AluSx SINE Alu 1 302 -10 475 231 156 54 chr9 62702958 62703329 -55159298 + L1MEd LINE L1 926 1426 -1064 186 351 13 26 chr9 62703329 62703406 -55159221 - L2 LINE L2 -293 2979 2904 990 214 98 14 chr9 62703416 62703711 -55158916 + MER5C DNA MER1_type 5 324 0 494 332 186 25 chr9 62703722 62704366 -55158261 - L2 LINE L2 -419 2895 2148 28 48 0 0 chr9 62704691 62704733 -55157894 + AT_rich Low_complexity Low_complexity 1 42 0 430 198 40 10 chr9 62705302 62705403 -55157224 - Tigger7 DNA MER2_type 0 2587 2484 * 1442 179 7 50 chr9 62705397 62705676 -55156951 - Tigger7 DNA MER2_type -466 267 1 361 164 0 0 chr9 62706202 62706263 -55156364 + L1MD3 LINE L1 6444 6504 -1491 30 45 0 0 chr9 62706458 62706502 -55156125 + AT_rich Low_complexity Low_complexity 1 44 0 637 144 18 9 chr9 62707623 62707734 -55154893 + L1MC2 LINE L1 6232 6343 -1 27 62 0 0 chr9 62707881 62707929 -55154698 + AT_rich Low_complexity Low_complexity 1 48 0 21 0 0 0 chr9 62709073 62709094 -55153533 + AT_rich Low_complexity Low_complexity 1 21 0 749 161 0 0 chr9 62709246 62709364 -55153263 + FLAM_C SINE Alu 1 118 -25 27 92 0 0 chr9 62709442 62709518 -55153109 + AT_rich Low_complexity Low_complexity 1 76 0 25 31 0 0 chr9 62710053 62710085 -55152542 + AT_rich Low_complexity Low_complexity 1 32 0 180 0 0 0 chr9 62710499 62710519 -55152108 + (TG)n Simple_repeat Simple_repeat 1 20 0 27 29 0 0 chr9 62710798 62710832 -55151795 + AT_rich Low_complexity Low_complexity 1 34 0 2048 101 11 7 chr9 62710886 62711173 -55151454 + AluSq SINE Alu 14 301 -12 241 120 0 4 chr9 62711314 62711392 -55151235 - Alu SINE Alu 0 301 194 414 271 107 12 chr9 62711397 62711676 -55150951 + L1M1 LINE L1 5308 5616 -527 209 356 69 29 chr9 62712165 62712339 -55150288 + MIR SINE MIR 2 182 -80 230 234 0 0 chr9 62712450 62712497 -55150130 - L2 LINE L2 0 3272 3226 1254 159 0 10 chr9 62712741 62712949 -55149678 + MER46A DNA MER2_type 31 236 0 1254 219 105 6 chr9 62712970 62713304 -55149323 - L1MD3 LINE L1 -8 7987 7621 2161 115 0 10 chr9 62713312 62713607 -55149020 + AluSx SINE Alu 1 292 -20 1519 231 98 7 chr9 62713790 62714218 -55148409 + MLT1D LTR MaLR 37 503 -2 349 298 48 64 chr9 62714654 62714842 -55147785 - L2 LINE L2 -11 3302 3118 969 222 52 15 chr9 62715466 62715736 -55146891 - HAL1 LINE L1 -756 1751 1472 318 301 111 12 chr9 62715938 62716421 -55146206 + L1M4 LINE L1 4488 5022 -1124 25 0 0 0 chr9 62716692 62716717 -55145910 + AT_rich Low_complexity Low_complexity 1 25 0 2116 108 26 7 chr9 62717024 62717329 -55145298 + AluSq SINE Alu 1 311 -2 248 310 0 0 chr9 62718216 62718274 -55144353 - L2 LINE L2 -4 3268 3211 473 271 113 0 chr9 62720069 62720202 -55142425 - MIR3 SINE MIR -31 177 30 546 270 40 11 chr9 62720541 62720715 -55141912 - MER46C DNA MER2_type 0 338 160 230 227 0 40 chr9 62720861 62720936 -55141691 - L1ME4a LINE L1 -3 6118 6047 250 257 68 95 chr9 62721091 62721239 -55141388 - L1ME4a LINE L1 -256 5865 5722 346 318 262 23 chr9 62721244 62721549 -55141078 - L2 LINE L2 -5 3267 2890 235 161 125 0 chr9 62721849 62721905 -55140722 - MER113 DNA MER1_type? -415 106 44 336 308 30 96 chr9 62721939 62722241 -55140386 - L2 LINE L2 -516 2798 2517 235 167 0 0 chr9 62723707 62723749 -55138878 + L1MC5 LINE L1 7192 7233 -728 1714 235 63 37 chr9 62723772 62724520 -55138107 + L1MC5 LINE L1 7246 7917 -44 1204 152 160 49 chr9 62725055 62725318 -55137309 + AluJb SINE Alu 1 292 -20 202 264 38 0 chr9 62725358 62725411 -55137216 + L2 LINE L2 3251 3305 -8 2200 92 4 0 chr9 62726235 62726544 -55136083 - AluSx SINE Alu 0 310 1 22 56 0 0 chr9 62727192 62727228 -55135399 + AT_rich Low_complexity Low_complexity 1 36 0 323 325 159 32 chr9 62727867 62728206 -55134421 - L1M4 LINE L1 -1711 4435 4054 420 248 33 16 chr9 62728262 62728383 -55134244 - MIR SINE MIR 0 262 140 387 305 15 0 chr9 62728434 62728565 -55134062 - L1M4 LINE L1 -2216 3930 3798 2102 102 3 10 chr9 62729445 62729738 -55132889 - AluSx SINE Alu -21 291 1 423 0 0 0 chr9 62729827 62729874 -55132753 + (CA)n Simple_repeat Simple_repeat 2 48 0 357 162 0 0 chr9 62729887 62729955 -55132672 + GA-rich Low_complexity Low_complexity 1 68 0 851 272 58 21 chr9 62730594 62730837 -55131790 + MIR SINE MIR 8 259 -3 284 301 55 14 chr9 62730858 62731004 -55131623 - HAL1 LINE L1 -1027 1480 1329 9490 172 58 76 chr9 62731085 62733319 -55129308 + L1M2 LINE L1 1 2194 -4655 * 21249 138 40 13 chr9 62733317 62736808 -55125819 + L1M1 LINE L1 15 3600 -3965 6610 104 18 13 chr9 62736802 62737914 -55124713 + L1MA4A LINE L1 5175 6292 -11 * 415 242 56 35 chr9 62738899 62739130 -55123497 + L1M1 LINE L1 3769 4004 -3561 352 266 112 21 chr9 62739403 62739546 -55123081 + L1M1 LINE L1 4097 4252 -3313 1826 242 42 47 chr9 62739671 62740008 -55122619 + L1MC4 LINE L1 6456 6790 -1252 2283 72 35 0 chr9 62740008 62740298 -55122329 - AluSq SINE Alu -13 300 1 1826 242 42 47 chr9 62740298 62740576 -55122051 + L1MC4 LINE L1 6790 7068 -974 309 218 51 0 chr9 62740582 62740660 -55121967 + L1MC4a LINE L1 7158 7239 -569 195 42 0 0 chr9 62741868 62741892 -55120735 + (T)n Simple_repeat Simple_repeat 1 24 0 2085 128 0 3 chr9 62742409 62742697 -55119930 - AluSg SINE Alu -23 287 1 325 253 13 13 chr9 62742726 62742805 -55119822 + MER21B LTR ERV1 15 93 -770 2411 239 97 32 chr9 62742824 62743616 -55119011 + MER21B LTR ERV1 19 862 -1 254 289 92 54 chr9 62744482 62744742 -55117885 + L1M1 LINE L1 5068 5337 -2228 24 77 0 0 chr9 62744754 62744806 -55117821 + AT_rich Low_complexity Low_complexity 1 52 0 410 317 180 3 chr9 62744980 62745286 -55117341 + L1M1 LINE L1 5652 6011 -1554 451 262 114 71 chr9 62746005 62746498 -55116129 + L1ME4a LINE L1 5605 6118 -3 622 245 97 46 chr9 62746543 62746935 -55115692 + L1ME4a LINE L1 5675 6086 -35 22 0 0 0 chr9 62747345 62747367 -55115260 + AT_rich Low_complexity Low_complexity 1 22 0 1816 221 34 86 chr9 62748362 62748675 -55113952 + L1M4 LINE L1 3170 3498 -2648 1882 151 24 0 chr9 62748675 62748966 -55113661 + AluSx SINE Alu 1 298 -14 1816 221 34 86 chr9 62748966 62749421 -55113206 + L1M4 LINE L1 3498 3898 -2248 24 0 0 0 chr9 62750082 62750106 -55112521 + AT_rich Low_complexity Low_complexity 1 24 0 220 269 19 0 chr9 62750463 62750515 -55112112 - L2 LINE L2 0 3272 3220 1874 138 0 35 chr9 62750846 62751157 -55111470 + AluSx SINE Alu 1 300 -12 31 26 0 0 chr9 62751781 62751819 -55110808 + AT_rich Low_complexity Low_complexity 1 38 0 22 56 0 0 chr9 62753301 62753337 -55109290 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr9 62753622 62753643 -55108984 + AT_rich Low_complexity Low_complexity 1 21 0 446 276 140 51 chr9 62753791 62754084 -55108543 - MER102b DNA MER1_type -21 320 2 2278 84 0 13 chr9 62754190 62754489 -55108138 + AluSg SINE Alu 1 295 -15 517 269 111 6 chr9 62754983 62755154 -55107473 + MIR SINE MIR 2 190 -72 863 237 62 125 chr9 62755624 62756185 -55106442 - L1MC4a LINE L1 -686 5470 5366 2110 114 0 0 chr9 62756322 62756612 -55106015 + AluY SINE Alu 2 291 -20 192 40 0 0 chr9 62756617 62756642 -55105985 + (T)n Simple_repeat Simple_repeat 1 25 0 295 234 0 13 chr9 62756651 62756728 -55105899 + L1ME4a LINE L1 5965 6040 -81 24 0 0 0 chr9 62756801 62756825 -55105802 + AT_rich Low_complexity Low_complexity 1 24 0 1279 206 80 40 chr9 62757386 62757711 -55104916 - MER58B DNA MER1_type 0 341 4 306 262 64 14 chr9 62757722 62757863 -55104764 + MER112 DNA MER1_type 2 149 -111 235 321 28 55 chr9 62757905 62758014 -55104613 - MIR3 SINE MIR -50 158 53 2282 162 25 21 chr9 62758311 62758742 -55103885 + Tigger2a DNA MER2_type 1 433 -1 21 36 0 0 chr9 62758831 62758859 -55103768 + AT_rich Low_complexity Low_complexity 1 28 0 1941 153 0 6 chr9 62759419 62759732 -55102895 - AluY SINE Alu 0 311 1 224 135 0 19 chr9 62761072 62761124 -55101503 + (CTTA)n Simple_repeat Simple_repeat 1 51 0 398 109 0 0 chr9 62761124 62761179 -55101448 - Alu SINE Alu -10 292 238 342 0 0 0 chr9 62761179 62761217 -55101410 + (ATTG)n Simple_repeat Simple_repeat 4 41 0 1899 151 0 0 chr9 62761217 62761495 -55101132 - AluSx SINE Alu -32 280 3 611 349 77 35 chr9 62761513 62762303 -55100324 - ERVL LTR ERVL -461 5303 4481 1106 102 97 29 chr9 62762783 62762989 -55099638 - L1MA3 LINE L1 0 6305 6086 498 266 116 107 chr9 62764420 62764627 -55098000 - L2 LINE L2 -16 3297 3093 2255 98 3 10 chr9 62764627 62764934 -55097693 + AluSx SINE Alu 1 305 -7 498 266 116 107 chr9 62764934 62765312 -55097315 - L2 LINE L2 -220 3093 2692 557 299 63 61 chr9 62765399 62765794 -55096833 - L1ME LINE L1 -370 5751 5356 312 341 84 95 chr9 62766176 62766736 -55095891 + L1MEd LINE L1 427 980 -5550 2147 100 13 3 chr9 62766973 62767274 -55095353 - AluSc SINE Alu -5 304 1 579 317 44 3 chr9 62767274 62767567 -55095060 + L1MEd LINE L1 1363 1667 -4863 1732 223 60 44 chr9 62767655 62767758 -55094869 + L1ME2 LINE L1 5585 5685 -649 2264 106 0 3 chr9 62767758 62768060 -55094567 - AluSq SINE Alu -12 301 1 1732 223 60 44 chr9 62768060 62768537 -55094090 + L1ME2 LINE L1 5685 6331 -3 265 233 158 37 chr9 62769140 62769355 -55093272 + L1MEd LINE L1 2433 2646 -3894 527 246 80 89 chr9 62769401 62770042 -55092585 + L1MEd LINE L1 2773 3407 -3133 354 156 0 0 chr9 62770053 62770117 -55092510 + (CA)n Simple_repeat Simple_repeat 1 64 0 230 208 0 0 chr9 62770309 62770362 -55092265 + HAL1 LINE L1 2451 2503 -4 1132 226 73 0 chr9 62771581 62771829 -55090798 + Tigger7 DNA MER2_type 2 267 -2220 547 93 139 0 chr9 62771828 62771914 -55090713 + Tigger7 DNA MER2_type 2490 2587 0 * 1957 135 7 10 chr9 62772418 62772715 -55089912 - AluSx SINE Alu -15 297 2 183 236 36 55 chr9 62772829 62772884 -55089743 - MIR3 SINE MIR -23 185 132 2109 102 0 17 chr9 62773055 62773349 -55089278 - AluSc SINE Alu -20 289 1 641 301 64 20 chr9 62773979 62774228 -55088399 - MIR SINE MIR -1 261 2 519 254 183 33 chr9 62775716 62775929 -55086698 + MIR SINE MIR 3 247 -15 467 207 27 9 chr9 62776037 62776148 -55086479 + L1MC4 LINE L1 7549 7661 -381 225 345 22 86 chr9 62777495 62777552 -55085075 - L2 LINE L2 -34 3238 3179 1250 157 0 58 chr9 62777552 62777713 -55084914 + MER30 DNA MER1_type 3 147 -83 2355 85 3 0 chr9 62777713 62778008 -55084619 + AluSp SINE Alu 1 296 -17 1250 157 0 58 chr9 62778008 62778088 -55084539 + MER30 DNA MER1_type 147 230 0 225 345 22 86 chr9 62778088 62778169 -55084458 - L2 LINE L2 -93 3179 3109 760 265 60 10 chr9 62778774 62778974 -55083653 + MIR SINE MIR 23 232 -30 2454 60 0 0 chr9 62779253 62779552 -55083075 + AluY SINE Alu 6 304 -7 322 244 0 12 chr9 62779877 62779959 -55082668 + L1MC/D LINE L1 5714 5794 -2014 578 320 119 14 chr9 62780204 62780701 -55081926 - L1M4 LINE L1 -1905 4241 3693 198 103 0 0 chr9 62780755 62780784 -55081843 + (T)n Simple_repeat Simple_repeat 1 29 0 2021 188 53 14 chr9 62780965 62781380 -55081247 + Tigger2a DNA MER2_type 1 431 -3 308 260 48 14 chr9 62781687 62781833 -55080794 - L1M4 LINE L1 -3849 2297 2147 370 365 78 14 chr9 62782208 62782490 -55080137 - HAL1b LINE L1 -585 763 464 271 292 90 0 chr9 62782534 62782623 -55080004 - L2 LINE L2 0 3272 3176 3132 203 50 56 chr9 62782623 62782946 -55079681 + MER21B LTR ERV1 6 329 -534 2248 91 0 10 chr9 62782946 62783243 -55079384 + AluSc SINE Alu 1 294 -15 3132 203 50 56 chr9 62783243 62783711 -55078916 + MER21B LTR ERV1 329 793 -70 506 160 0 10 chr9 62783847 62783947 -55078680 + FLAM_A SINE Alu 8 106 -36 2234 104 0 7 chr9 62785278 62785587 -55077040 + AluSx SINE Alu 1 307 -5 2431 78 0 0 chr9 62786536 62786844 -55075783 - AluY SINE Alu -3 308 1 456 325 92 33 chr9 62787109 62787349 -55075278 + L3 LINE CR1 1170 1423 -154 1817 18 0 5 chr9 62787695 62787912 -55074715 + L1PA2 LINE L1 5940 6155 0 29 47 0 0 chr9 62789099 62789142 -55073485 + AT_rich Low_complexity Low_complexity 1 43 0 23 54 0 0 chr9 62793094 62793131 -55069496 + AT_rich Low_complexity Low_complexity 1 37 0 181 308 0 31 chr9 62793336 62793401 -55069226 - MIR SINE MIR -34 228 166 2994 218 69 39 chr9 62793538 62794378 -55068249 + L1MEc LINE L1 37 901 -5495 1329 231 32 72 chr9 62794473 62794989 -55067638 + L1ME1 LINE L1 5609 6254 -80 949 175 50 58 chr9 62794989 62795229 -55067398 + ORSL DNA AcHobo 1 238 -37 248 244 23 12 chr9 62795246 62795332 -55067295 + L1MA10 LINE L1 6246 6332 -2 2200 187 28 15 chr9 62795780 62796241 -55066386 + MLT1C LTR MaLR 1 467 0 26 0 0 0 chr9 62797490 62797516 -55065111 + AT_rich Low_complexity Low_complexity 1 26 0 569 270 107 10 chr9 62797641 62797837 -55064790 - MIR SINE MIR -37 225 11 678 246 74 103 chr9 62798086 62798941 -55063686 + L1MC5 LINE L1 7087 7916 -45 274 246 17 34 chr9 62798953 62799071 -55063556 + L1MC5 LINE L1 7538 7653 -308 779 168 0 0 chr9 62799071 62799196 -55063431 + FRAM SINE Alu 38 162 -14 320 274 121 0 chr9 62799205 62799329 -55063298 + L1MC5 LINE L1 7660 7798 -163 297 253 20 61 chr9 62799920 62800019 -55062608 - MIR3 SINE MIR -2 206 112 254 350 73 73 chr9 62800451 62800711 -55061916 - L2 LINE L2 -47 3225 2966 706 218 0 0 chr9 62801162 62801286 -55061341 + FLAM_A SINE Alu 2 125 -8 1537 192 7 21 chr9 62801533 62801819 -55060808 - AluJo SINE Alu -25 287 6 424 285 60 51 chr9 62801846 62802081 -55060546 - L1M4 LINE L1 -2952 3194 2958 238 286 26 0 chr9 62802081 62802158 -55060469 + (CATATA)n Simple_repeat Simple_repeat 6 84 0 2130 124 7 0 chr9 62802651 62802941 -55059686 - AluSx SINE Alu -14 298 7 2182 121 0 6 chr9 62803299 62803613 -55059014 - AluSx SINE Alu 0 312 1 23 68 0 0 chr9 62803659 62803703 -55058924 + AT_rich Low_complexity Low_complexity 1 44 0 21 71 0 0 chr9 62803717 62803759 -55058868 + AT_rich Low_complexity Low_complexity 1 42 0 24 32 0 0 chr9 62804010 62804041 -55058586 + AT_rich Low_complexity Low_complexity 1 31 0 888 182 33 6 chr9 62804209 62804390 -55058237 + L1PB4 LINE L1 5969 6154 -2 2392 76 0 10 chr9 62804417 62804719 -55057908 + AluY SINE Alu 1 299 -12 2270 102 0 3 chr9 62805479 62805774 -55056853 - AluSg SINE Alu -16 294 1 2258 95 0 3 chr9 62806322 62806617 -55056010 + AluSc SINE Alu 1 294 -15 5784 154 27 6 chr9 62806683 62807909 -55054718 + L1MA4 LINE L1 5042 6294 -6 39 50 0 0 chr9 62808162 62808222 -55054405 + AT_rich Low_complexity Low_complexity 1 60 0 2017 122 0 3 chr9 62808299 62808585 -55054042 + AluSq SINE Alu 1 285 -28 884 238 92 42 chr9 62809475 62809811 -55052816 - L1MC4a LINE L1 -1961 5847 5495 2470 76 0 3 chr9 62809983 62810286 -55052341 - AluY SINE Alu -9 302 1 378 255 73 67 chr9 62810669 62810880 -55051747 - L1MC4a LINE L1 -1314 4832 4617 2321 125 0 0 chr9 62810880 62811192 -55051435 + AluSx SINE Alu 1 312 0 378 255 73 67 chr9 62811192 62811294 -55051333 - L1MC4a LINE L1 -1529 4617 4517 198 222 0 0 chr9 62811715 62811769 -55050858 + (TATG)n Simple_repeat Simple_repeat 2 55 0 2379 99 0 0 chr9 62812324 62812626 -55050001 - AluSg SINE Alu -8 302 1 225 0 0 0 chr9 62812751 62812776 -55049851 + (A)n Simple_repeat Simple_repeat 1 25 0 193 344 93 40 chr9 62814072 62814395 -55048232 + L2 LINE L2 567 906 -2408 249 309 209 19 chr9 62814955 62815275 -55047352 + L2 LINE L2 1545 1925 -1389 1802 270 88 38 chr9 62815413 62815911 -55046716 + L1MEc LINE L1 905 1376 -4839 183 42 0 0 chr9 62815911 62815935 -55046692 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1802 270 88 38 chr9 62815935 62817010 -55045617 + L1MEc LINE L1 1376 2532 -3683 413 235 157 22 chr9 62817147 62817377 -55045250 + L1MEc LINE L1 1822 2082 -4314 3809 231 67 17 chr9 62817409 62818386 -55044241 + L1MEc LINE L1 2126 3052 -3163 2411 83 3 10 chr9 62818386 62818699 -55043928 + AluSq SINE Alu 1 311 -2 3809 231 67 17 chr9 62818699 62818854 -55043773 + L1MEc LINE L1 3052 3198 -3017 825 190 44 93 chr9 62818854 62819080 -55043547 - MER20 DNA MER1_type -1 218 4 3809 231 67 17 chr9 62819080 62819226 -55043401 + L1MEc LINE L1 3198 3463 -2752 664 196 146 0 chr9 62819728 62819886 -55042741 + MER58B DNA MER1_type 161 341 0 227 250 47 0 chr9 62819927 62819991 -55042636 - MER5B DNA MER1_type -74 104 38 721 274 59 73 chr9 62820004 62820191 -55042436 - L1ME LINE L1 -298 5823 5635 2094 125 3 16 chr9 62820191 62820504 -55042123 + AluSx SINE Alu 1 309 -3 198 0 0 0 chr9 62820504 62820526 -55042101 + (TA)n Simple_repeat Simple_repeat 2 23 0 721 274 59 73 chr9 62820526 62820815 -55041812 - L1ME LINE L1 -484 5637 5353 29 28 0 0 chr9 62821992 62822028 -55040599 + AT_rich Low_complexity Low_complexity 1 36 0 270 0 0 0 chr9 62822115 62822145 -55040482 + (TG)n Simple_repeat Simple_repeat 2 31 0 308 304 163 22 chr9 62822451 62822635 -55039992 - MIR SINE MIR 0 262 53 2307 90 7 7 chr9 62822851 62823152 -55039475 - AluSg SINE Alu -9 301 1 332 278 110 34 chr9 62823648 62823911 -55038716 + L2 LINE L2 1227 1509 -1805 * 1109 269 62 37 chr9 62823910 62823936 -55038691 - L2 LINE L2 -4 3309 3285 2075 112 17 7 chr9 62823936 62824232 -55038395 + AluSx SINE Alu 1 299 -13 1109 269 62 37 chr9 62824232 62824826 -55037801 - L2 LINE L2 -28 3285 2672 463 288 249 10 chr9 62825101 62825719 -55036908 + L2 LINE L2 1919 2684 -630 624 166 79 0 chr9 62825721 62825860 -55036767 - L1MD2 LINE L1 0 6359 6210 1513 195 47 51 chr9 62825999 62826447 -55036180 + Charlie1a DNA MER1_type 32 533 -2228 2244 132 0 0 chr9 62826447 62826758 -55035869 - AluSx SINE Alu -1 311 1 1513 195 47 51 chr9 62826758 62826912 -55035715 + Charlie1a DNA MER1_type 533 686 -769 408 133 0 0 chr9 62827021 62827081 -55035546 + Alu SINE Alu 234 293 -17 1185 136 70 26 chr9 62827106 62827334 -55035293 + Charlie1a DNA MER1_type 784 1021 -434 1383 151 48 122 chr9 62827480 62827842 -55034785 + Charlie1a DNA MER1_type 1008 1327 -1434 2637 58 0 0 chr9 62827842 62828153 -55034474 - AluY SINE Alu 0 311 1 1383 151 48 122 chr9 62828153 62828273 -55034354 + Charlie1a DNA MER1_type 1327 1454 -1 252 135 19 39 chr9 62828309 62828361 -55034266 - L1MC5 LINE L1 -1223 6738 6688 2368 59 0 3 chr9 62829081 62829370 -55033257 - AluY SINE Alu 0 311 24 606 231 15 15 chr9 62829553 62829683 -55032944 - FLAM_A SINE Alu -3 130 1 1488 194 127 17 chr9 62830207 62830610 -55032017 - Charlie1b DNA MER1_type -76 447 1 976 269 86 24 chr9 62830610 62830980 -55031647 - MLT1I LTR MaLR -16 393 1 425 318 99 10 chr9 62830980 62831172 -55031455 + MLT1J LTR MaLR 130 338 -173 2165 113 20 0 chr9 62831319 62831612 -55031015 - AluSx SINE Alu -13 299 1 2373 102 0 6 chr9 62831616 62831930 -55030697 - AluSx SINE Alu 0 312 1 314 70 18 18 chr9 62832102 62832159 -55030468 - L1MA5 LINE L1 -304 5996 5940 1240 329 102 31 chr9 62833707 62834470 -55028157 - L2 LINE L2 -609 2705 1889 2789 266 80 21 chr9 62834493 62835788 -55026839 + L1MEc LINE L1 174 1353 -4862 665 176 0 44 chr9 62835796 62835932 -55026695 + FLAM_C SINE Alu 2 131 -2 1200 215 77 61 chr9 62835968 62836091 -55026536 + L1MEc LINE L1 1831 1951 -4445 2477 61 0 10 chr9 62836091 62836388 -55026239 - AluY SINE Alu -15 296 3 1200 215 77 61 chr9 62836388 62836631 -55025996 + L1MEc LINE L1 1951 2189 -4207 2169 120 3 3 chr9 62836631 62836940 -55025687 + AluSg1 SINE Alu 1 309 0 1200 215 77 61 chr9 62836940 62836989 -55025638 + L1MEc LINE L1 2189 2236 -4160 2301 79 0 20 chr9 62836989 62837292 -55025335 + AluY SINE Alu 1 297 -14 1200 215 77 61 chr9 62837292 62837460 -55025167 + L1MEc LINE L1 2236 2425 -3971 1760 242 57 3 chr9 62837464 62838060 -55024567 + L1MEc LINE L1 2867 3494 -2721 2260 174 40 87 chr9 62838078 62838230 -55024397 - MLT1D LTR MaLR -1 504 346 1821 80 0 0 chr9 62838230 62838469 -55024158 + L1PA7 LINE L1 5909 6147 -7 2260 174 40 87 chr9 62838469 62838845 -55023782 - MLT1D LTR MaLR -159 346 1 2165 219 55 44 chr9 62838846 62838931 -55023696 + L1MEc LINE L1 3483 3566 -2649 2161 108 16 0 chr9 62838931 62839236 -55023391 - AluSx SINE Alu -2 310 1 2165 219 55 44 chr9 62839236 62839838 -55022789 + L1MEc LINE L1 3566 4178 -2037 479 355 78 18 chr9 62839896 62840231 -55022396 - L2 LINE L2 -2186 1128 774 240 59 0 0 chr9 62841077 62841111 -55021516 + (CAA)n Simple_repeat Simple_repeat 3 36 0 275 333 31 0 chr9 62841583 62841679 -55020948 - MIR SINE MIR -72 190 92 2359 104 0 0 chr9 62841831 62842140 -55020487 - AluSx SINE Alu -3 309 1 1486 174 53 18 chr9 62842141 62842382 -55020245 - MER58B DNA MER1_type -2090 330 76 2289 93 3 3 chr9 62842382 62842682 -55019945 + AluSq SINE Alu 1 300 -13 1486 174 53 18 chr9 62842682 62842721 -55019906 - MER58B DNA MER1_type -2344 76 40 2221 103 0 0 chr9 62843649 62843959 -55018668 + AluSq SINE Alu 1 310 0 2215 117 3 0 chr9 62845365 62845673 -55016954 + AluSx SINE Alu 1 309 -3 476 289 44 0 chr9 62846173 62846308 -55016319 - L2 LINE L2 -2155 1159 1019 * 2829 216 221 38 chr9 62846307 62847594 -55015033 + L2 LINE L2 1624 3146 -167 1841 179 7 0 chr9 62847622 62847923 -55014704 + AluJo SINE Alu 1 303 -9 754 162 7 14 chr9 62847937 62848079 -55014548 + MLT1A1 LTR MaLR 1 141 -224 35234 89 12 12 chr9 62848080 62854227 -55008400 - L1PA6 LINE L1 0 6154 5 1158 165 20 56 chr9 62854227 62854405 -55008222 + MLT1A1 LTR MaLR 126 294 -71 2208 136 0 0 chr9 62854405 62854714 -55007913 + AluSx SINE Alu 1 309 -3 1158 165 20 56 chr9 62854714 62854784 -55007843 + MLT1A1 LTR MaLR 294 365 0 502 216 52 22 chr9 62855133 62855267 -55007360 + L2 LINE L2 3176 3313 0 30 27 0 0 chr9 62855690 62855727 -55006900 + AT_rich Low_complexity Low_complexity 1 37 0 2897 225 96 44 chr9 62855747 62856028 -55006599 + Charlie6 DNA MER1_type 128 393 -3107 1943 172 3 10 chr9 62856028 62856164 -55006463 + AluJo SINE Alu 1 136 -176 2266 94 0 35 chr9 62856164 62856483 -55006144 + AluSx SINE Alu 1 308 -4 1943 172 3 10 chr9 62856483 62856660 -55005967 + AluJo SINE Alu 136 312 0 2897 225 96 44 chr9 62856660 62857391 -55005236 + Charlie6 DNA MER1_type 393 1192 -2308 295 170 0 0 chr9 62857395 62857448 -55005179 + Tigger4(Zombi) DNA MER2_type 1 53 -2678 2108 117 10 0 chr9 62857448 62857739 -55004888 + AluSx SINE Alu 1 294 -18 3804 195 86 68 chr9 62857751 62858133 -55004494 + Charlie6 DNA MER1_type 1568 1942 -1558 1433 183 49 46 chr9 62858133 62858418 -55004209 + AluJo SINE Alu 1 286 -26 3804 195 86 68 chr9 62858418 62858431 -55004196 + Charlie6 DNA MER1_type 1942 1953 -1547 423 0 0 0 chr9 62858431 62858478 -55004149 + (CA)n Simple_repeat Simple_repeat 2 48 0 3804 195 86 68 chr9 62858478 62859310 -55003317 + Charlie6 DNA MER1_type 1953 2818 -682 273 99 0 277 chr9 62859313 62859414 -55003213 + MADE1 DNA Mariner 8 80 0 809 207 42 5 chr9 62859421 62859614 -55003013 + L1MB4 LINE L1 4753 4952 -1194 805 169 28 6 chr9 62859613 62859790 -55002837 + L1MB4 LINE L1 5703 5883 -297 * 1281 155 55 49 chr9 62859779 62860274 -55002353 + L1M2 LINE L1 4993 5484 -743 291 164 18 0 chr9 62860275 62860330 -55002297 + Charlie6 DNA MER1_type 3445 3500 0 1770 206 194 48 chr9 62860653 62861322 -55001305 + LTR41 LTR ERVL 1 767 -6 184 238 48 48 chr9 62861502 62861565 -55001062 + MER5B DNA MER1_type 115 177 -1 858 136 19 13 chr9 62861661 62861815 -55000812 + L1M4 LINE L1 5432 5586 -588 1680 185 40 7 chr9 62861848 62862150 -55000477 - AluJo SINE Alu 0 312 1 1737 91 0 0 chr9 62862611 62862832 -54999795 - AluY SINE Alu -8 303 83 4245 234 46 25 chr9 62862963 62864372 -54998255 + L1M4c LINE L1 2300 3755 -2627 2315 84 0 3 chr9 62864372 62864671 -54997956 + AluSc SINE Alu 1 298 -11 4245 234 46 25 chr9 62864671 62864930 -54997697 + L1M4c LINE L1 3755 4007 -2375 3548 153 49 50 chr9 62864931 62865191 -54997436 + L1MB3 LINE L1 5418 5677 -506 1675 139 4 26 chr9 62865191 62865464 -54997163 + AluY SINE Alu 40 306 -5 3548 153 49 50 chr9 62865464 62865963 -54996664 + L1MB3 LINE L1 5677 6176 -7 23 0 0 0 chr9 62865963 62865986 -54996641 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr9 62866158 62866179 -54996448 + AT_rich Low_complexity Low_complexity 1 21 0 1175 148 95 15 chr9 62866702 62866966 -54995661 - L1MA5A LINE L1 -4 6293 6009 374 256 22 0 chr9 62867057 62867147 -54995480 + Charlie1 DNA MER1_type 1 92 -2669 2237 104 0 0 chr9 62867237 62867536 -54995091 + AluY SINE Alu 13 311 0 3960 171 101 37 chr9 62867536 62868657 -54993970 + Charlie1 DNA MER1_type 1564 2756 -5 564 247 30 64 chr9 62869307 62869574 -54993053 - MIR SINE MIR 0 262 5 2313 83 3 0 chr9 62869822 62870123 -54992504 + AluSq SINE Alu 1 302 -11 2009 116 38 3 chr9 62870127 62870420 -54992207 + AluSx SINE Alu 1 303 -9 22 35 0 0 chr9 62871754 62871783 -54990844 + GC_rich Low_complexity Low_complexity 1 29 0 276 120 0 0 chr9 62872294 62872344 -54990283 + (CGG)n Simple_repeat Simple_repeat 2 51 0 1748 169 6 22 chr9 62874268 62874581 -54988046 - AluJo SINE Alu 0 312 5 1906 141 77 7 chr9 62874795 62875212 -54987415 - MER61D LTR ERV1 0 501 1 205 229 0 21 chr9 62875738 62875786 -54986841 - MIR SINE MIR -3 259 213 474 134 0 0 chr9 62876071 62876138 -54986489 + AluJo SINE Alu 1 67 -245 3050 160 25 38 chr9 62876139 62876751 -54985876 + LTR9 LTR ERV1 1 604 -8 1437 153 4 29 chr9 62876755 62876997 -54985630 + AluJo SINE Alu 60 295 -17 882 135 130 48 chr9 62877032 62877225 -54985402 + L1MA9 LINE L1 6059 6271 -41 1713 167 38 11 chr9 62877225 62877512 -54985115 - AluJo SINE Alu -17 295 1 882 135 130 48 chr9 62877512 62877525 -54985102 + L1MA9 LINE L1 6271 6282 -30 * 1795 230 32 8 chr9 62877522 62878017 -54984610 - L1M4 LINE L1 -1280 4866 4360 246 160 0 0 chr9 62878158 62878208 -54984419 + (TAA)n Simple_repeat Simple_repeat 1 50 0 847 291 154 42 chr9 62878350 62879121 -54983506 + L2 LINE L2 1728 2585 -729 1948 162 27 0 chr9 62879353 62879650 -54982977 - AluJo SINE Alu -7 305 1 577 188 90 35 chr9 62880002 62880146 -54982481 + MIR SINE MIR 83 234 -28 2120 105 0 4 chr9 62880241 62880518 -54982109 - AluY SINE Alu -16 295 20 998 156 156 30 chr9 62881621 62881890 -54980737 - MER5C DNA MER1_type 0 324 22 2031 96 33 0 chr9 62881969 62882261 -54980366 - AluSx SINE Alu 0 301 1 1690 131 4 35 chr9 62882432 62882692 -54979935 + AluSx SINE Alu 42 293 -19 697 87 0 10 chr9 62883062 62883165 -54979462 + L1MA5A LINE L1 6191 6292 -5 1633 191 0 48 chr9 62883169 62883484 -54979143 + AluJo SINE Alu 1 300 -12 693 97 97 0 chr9 62883580 62883683 -54978944 + FRAM SINE Alu 57 169 -7 2100 90 8 0 chr9 62883931 62884198 -54978429 + AluSq SINE Alu 16 284 -29 465 19 0 0 chr9 62884198 62884252 -54978375 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 568 170 54 0 chr9 62884341 62884453 -54978174 - L1PA16 LINE L1 0 6166 6049 2235 77 32 0 chr9 62884641 62884926 -54977701 - AluY SINE Alu -17 294 1 29 47 0 0 chr9 62885869 62885912 -54976715 + AT_rich Low_complexity Low_complexity 1 43 0 348 265 98 38 chr9 62886023 62886155 -54976472 - L2 LINE L2 0 3272 3133 206 250 0 0 chr9 62886252 62886296 -54976331 - L3b LINE CR1 -353 1230 1187 22 0 0 0 chr9 62886492 62886514 -54976113 + AT_rich Low_complexity Low_complexity 1 22 0 992 177 15 20 chr9 62886732 62886935 -54975692 + L1MB8 LINE L1 5444 5645 -533 456 139 0 0 chr9 62886952 62887031 -54975596 + (TAGA)n Simple_repeat Simple_repeat 3 81 0 2235 138 28 105 chr9 62887040 62887554 -54975073 + L1MB8 LINE L1 5639 6105 -73 1981 110 0 0 chr9 62887554 62887809 -54974818 - AluSg SINE Alu -55 255 1 2235 138 28 105 chr9 62887809 62887874 -54974753 + L1MB8 LINE L1 6105 6173 -5 345 278 59 71 chr9 62887876 62888045 -54974582 + HAL1 LINE L1 85 251 -2256 300 326 54 0 chr9 62888360 62888489 -54974138 + HAL1 LINE L1 540 675 -1832 647 266 164 7 chr9 62888566 62888807 -54973820 + HAL1 LINE L1 801 1003 -1504 2139 107 3 0 chr9 62888807 62889097 -54973530 + AluSq SINE Alu 1 291 -22 647 266 164 7 chr9 62889097 62889295 -54973332 + HAL1 LINE L1 1003 1309 -1198 25637 35 5 0 chr9 62889321 62893210 -54969417 + L1PA5 LINE L1 2244 6136 -18 195 191 0 0 chr9 62893210 62893278 -54969349 + (TA)n Simple_repeat Simple_repeat 1 68 0 932 230 168 40 chr9 62893325 62894309 -54968318 + HAL1 LINE L1 1337 2473 -34 2096 130 3 3 chr9 62894692 62894993 -54967634 + AluSq SINE Alu 1 301 -12 579 182 112 48 chr9 62895638 62895825 -54966802 - MER105 DNA DNA -3 201 3 440 159 14 0 chr9 62897413 62897482 -54965145 + AluJ/FLAM SINE Alu 28 97 -215 2291 96 0 13 chr9 62897866 62898168 -54964459 + AluY SINE Alu 1 298 -13 2433 59 10 13 chr9 62898218 62898522 -54964105 + AluSp SINE Alu 1 303 -10 253 221 26 39 chr9 62899201 62899278 -54963349 + MER63 DNA MER1_type 660 737 -325 2225 99 23 7 chr9 62899796 62900098 -54962529 - AluSx SINE Alu -5 307 1 2278 86 17 0 chr9 62901590 62901880 -54960747 - AluSg SINE Alu -15 295 1 321 263 53 14 chr9 62902035 62902150 -54960477 - MIR SINE MIR -11 197 73 275 218 0 182 chr9 62902517 62902627 -54960000 + MIR3 SINE MIR 83 172 -36 2259 101 7 0 chr9 62902629 62902937 -54959690 - AluSp SINE Alu -3 310 1 6062 52 0 6 chr9 62902953 62903743 -54958884 - L1PA5 LINE L1 0 6154 5370 238 191 0 0 chr9 62904501 62904548 -54958079 + MLT1A2 LTR MaLR 328 374 0 385 236 9 82 chr9 62904549 62904659 -54957968 + L2 LINE L2 3202 3303 -10 2177 103 3 13 chr9 62904815 62905115 -54957512 - AluSx SINE Alu 0 312 16 431 290 77 16 chr9 62905116 62905364 -54957263 - LTR33 LTR ERVL -38 483 221 1164 272 38 2 chr9 62905366 62905760 -54956867 - L1 LINE L1 -3146 3000 2593 5651 209 29 4 chr9 62905760 62907141 -54955486 + L1 LINE L1 2979 4394 -1752 213 39 0 0 chr9 62907141 62907167 -54955460 + (CA)n Simple_repeat Simple_repeat 1 26 0 22 35 0 0 chr9 62909702 62909731 -54952896 + AT_rich Low_complexity Low_complexity 1 29 0 823 219 53 0 chr9 62910381 62910532 -54952095 + AluJo SINE Alu 1 159 -153 1311 128 0 6 chr9 62910654 62910834 -54951793 - AluSg SINE Alu -131 179 1 1137 143 0 0 chr9 62912062 62912223 -54950404 - AluJb SINE Alu -14 298 138 271 163 0 150 chr9 62912952 62913032 -54949595 + AluJo SINE Alu 116 183 -119 1286 101 18 0 chr9 62913194 62913362 -54949265 - AluSg/x SINE Alu -8 304 134 2537 46 0 10 chr9 62913362 62913664 -54948963 - AluY SINE Alu -12 299 1 322 253 78 71 chr9 62913691 62913845 -54948782 + Charlie8 DNA MER1_type 1 155 -2262 210 241 112 94 chr9 62914078 62914143 -54948484 - MER5A DNA MER1_type 0 189 127 1016 173 0 0 chr9 62914143 62914299 -54948328 + FRAM SINE Alu 1 156 -10 210 241 112 94 chr9 62914299 62914403 -54948224 - MER5A DNA MER1_type -62 127 17 359 300 73 0 chr9 62914438 62914548 -54948079 - MIR SINE MIR -121 141 24 2122 101 40 3 chr9 62914791 62915089 -54947538 + AluSq SINE Alu 2 310 -3 243 204 85 9 chr9 62916018 62916099 -54946528 + MIR SINE MIR 63 153 -55 2220 99 3 3 chr9 62916189 62916482 -54946145 - AluSq SINE Alu -20 293 1 248 194 65 0 chr9 62917077 62917139 -54945488 - AluSq/x SINE Alu -182 121 56 1632 140 19 39 chr9 62917162 62917205 -54945422 + L1PA16 LINE L1 5856 5898 -268 300 53 0 0 chr9 62917205 62917243 -54945384 + (CA)n Simple_repeat Simple_repeat 2 39 0 1632 140 19 39 chr9 62917243 62917507 -54945120 + L1PA16 LINE L1 5898 6157 -9 2072 181 80 99 chr9 62917957 62918289 -54944338 - L1MC5 LINE L1 -53 7908 7571 339 65 0 0 chr9 62918289 62918335 -54944292 + (TG)n Simple_repeat Simple_repeat 2 47 0 2072 181 80 99 chr9 62918335 62918346 -54944281 - L1MC5 LINE L1 -390 7571 7561 2228 67 0 8 chr9 62918346 62918613 -54944014 - AluSq SINE Alu -48 265 1 2072 181 80 99 chr9 62918613 62918787 -54943840 - L1MC5 LINE L1 -400 7561 7385 1716 195 0 3 chr9 62918787 62919090 -54943537 - AluJo SINE Alu -4 308 7 2072 181 80 99 chr9 62919090 62919255 -54943372 - L1MC5 LINE L1 -576 7385 7218 294 29 0 0 chr9 62919255 62919290 -54943337 + (TG)n Simple_repeat Simple_repeat 2 36 0 2072 181 80 99 chr9 62919290 62919612 -54943015 - L1MC5 LINE L1 -743 7218 6920 660 202 4 103 chr9 62919622 62919855 -54942772 - L1MC5 LINE L1 -1025 6936 6727 310 258 22 45 chr9 62919867 62919956 -54942671 + L1MC5 LINE L1 6642 6808 -1234 648 254 188 43 chr9 62920001 62920470 -54942157 + MLT1H LTR MaLR 13 549 0 23 54 0 0 chr9 62920470 62920507 -54942120 + AT_rich Low_complexity Low_complexity 1 37 0 4342 79 48 3 chr9 62920518 62921125 -54941502 - L1PA10 LINE L1 -16 6152 5519 666 172 17 9 chr9 62921789 62921905 -54940722 - FLAM_C SINE Alu -24 119 3 1019 238 50 69 chr9 62921908 62922124 -54940503 - HAL1 LINE L1 -482 2025 1807 1300 71 162 0 chr9 62922124 62922322 -54940305 + MER30 DNA MER1_type 1 230 0 1019 238 50 69 chr9 62922322 62922381 -54940246 - HAL1 LINE L1 -700 1807 1748 1947 151 3 31 chr9 62922381 62922700 -54939927 - AluSx SINE Alu -2 310 1 1019 238 50 69 chr9 62922700 62922802 -54939825 - HAL1 LINE L1 -759 1748 1654 2092 102 3 3 chr9 62922858 62923143 -54939484 - AluSq SINE Alu -5 308 24 309 297 10 0 chr9 62923170 62923271 -54939356 - HAL1 LINE L1 -1590 917 816 634 139 0 117 chr9 62923277 62923338 -54939289 + FLAM_A SINE Alu 2 69 -242 210 71 0 0 chr9 62923338 62923366 -54939261 + (TTA)n Simple_repeat Simple_repeat 3 30 0 4485 60 33 0 chr9 62923366 62923937 -54938690 - L1PA6 LINE L1 -18 6136 5547 634 139 0 117 chr9 62923937 62924011 -54938616 + FLAM_A SINE Alu 67 122 -189 1870 160 3 7 chr9 62924029 62924316 -54938311 - AluJo SINE Alu -26 286 1 1116 291 85 67 chr9 62924332 62925142 -54937485 - HAL1 LINE L1 -1682 825 1 315 0 0 0 chr9 62925306 62925341 -54937286 + (TG)n Simple_repeat Simple_repeat 2 36 0 32 0 0 0 chr9 62925495 62925527 -54937100 + AT_rich Low_complexity Low_complexity 1 32 0 2142 122 0 0 chr9 62925528 62925815 -54936812 + AluSx SINE Alu 1 287 -25 564 130 0 10 chr9 62925824 62925924 -54936703 - L1MA2 LINE L1 0 6304 6206 230 225 88 0 chr9 62926341 62926421 -54936206 + L1MC5 LINE L1 7705 7791 -170 252 269 0 0 chr9 62926422 62926489 -54936138 + L1MC5 LINE L1 7825 7891 -70 335 218 50 30 chr9 62926637 62926738 -54935889 + MLT1I LTR MaLR 280 382 -27 1847 145 0 17 chr9 62927473 62927763 -54934864 - AluJo SINE Alu -17 295 11 295 243 119 3 chr9 62928267 62928441 -54934186 + MIR SINE MIR 2 246 -16 591 239 61 14 chr9 62928444 62928657 -54933970 - Tigger3(Golem) DNA MER2_type 0 3035 2813 1904 131 14 0 chr9 62928823 62929098 -54933529 - AluSg SINE Alu -31 279 1 23 0 0 0 chr9 62929289 62929312 -54933315 + AT_rich Low_complexity Low_complexity 1 23 0 463 171 211 0 chr9 62929782 62929905 -54932722 + MER97c DNA MER1_type? 30 178 -912 27 0 0 0 chr9 62931317 62931344 -54931283 + AT_rich Low_complexity Low_complexity 1 27 0 206 180 16 0 chr9 62931377 62931438 -54931189 + (TA)n Simple_repeat Simple_repeat 1 62 0 206 245 0 0 chr9 62931438 62931491 -54931136 + (TATAA)n Simple_repeat Simple_repeat 2 54 0 * 269 178 33 44 chr9 62931486 62931576 -54931051 + (TA)n Simple_repeat Simple_repeat 2 90 0 26 30 0 0 chr9 62931611 62931644 -54930983 + AT_rich Low_complexity Low_complexity 1 33 0 253 288 23 17 chr9 62931728 62931905 -54930722 + (TA)n Simple_repeat Simple_repeat 1 178 0 22 0 0 0 chr9 62932070 62932092 -54930535 + AT_rich Low_complexity Low_complexity 1 22 0 408 155 0 0 chr9 62934512 62934583 -54928044 + (CA)n Simple_repeat Simple_repeat 2 72 0 1769 151 35 3 chr9 62934585 62934869 -54927758 - AluJb SINE Alu -19 293 1 626 225 8 8 chr9 62935701 62935821 -54926806 + FLAM_A SINE Alu 5 124 -9 1644 189 7 13 chr9 62936036 62936343 -54926284 + AluJb SINE Alu 1 305 -7 225 364 76 27 chr9 62936500 62936684 -54925943 + L2 LINE L2 2890 3082 -190 2258 107 0 0 chr9 62937104 62937402 -54925225 + AluSc SINE Alu 1 298 -11 800 162 0 22 chr9 62937490 62937626 -54925001 - FLAM_C SINE Alu 0 133 1 217 255 13 40 chr9 62938058 62938207 -54924420 + A-rich Low_complexity Low_complexity 1 145 0 2196 116 0 19 chr9 62938309 62938627 -54924000 + AluSx SINE Alu 1 312 0 682 182 58 0 chr9 62938761 62938882 -54923745 + FLAM_A SINE Alu 6 133 -9 1599 121 0 13 chr9 62939506 62939737 -54922890 - AluSq SINE Alu -8 305 78 3524 162 34 18 chr9 62939741 62940260 -54922367 - L1PA16 LINE L1 -341 5825 5316 2422 96 0 0 chr9 62940260 62940563 -54922064 - AluSx SINE Alu -9 303 1 3524 162 34 18 chr9 62940563 62941332 -54921295 - L1PA16 LINE L1 -850 5316 4501 21 43 0 22 chr9 62941920 62941947 -54920680 + AT_rich Low_complexity Low_complexity 1 28 -17 852 209 0 13 chr9 62941947 62942100 -54920527 - FRAM SINE Alu -15 151 1 21 43 0 22 chr9 62942100 62942118 -54920509 + AT_rich Low_complexity Low_complexity 28 45 0 2419 95 49 23 chr9 62942129 62942518 -54920109 + MLT2A1 LTR ERVL 1 399 -45 308 256 47 0 chr9 62942533 62942619 -54920008 - L1MC4 LINE L1 -1339 6703 6614 314 70 0 35 chr9 62942626 62942683 -54919944 + MLT2A2 LTR ERVL 399 453 0 2666 56 20 0 chr9 62942683 62943040 -54919587 + HERVL-A2 LTR ERVL 1 364 -5290 * 21820 55 8 3 chr9 62943030 62945828 -54916799 + HERVL-A1 LTR ERVL 2845 5654 0 2726 83 28 8 chr9 62945828 62946224 -54916403 + MLT2A1 LTR ERVL 1 404 -40 236 81 35 46 chr9 62946224 62946311 -54916316 + (TA)n Simple_repeat Simple_repeat 2 87 0 494 192 135 0 chr9 62946343 62946447 -54916180 - FLAM_C SINE Alu -25 118 1 1987 148 3 7 chr9 62946492 62946795 -54915832 - AluJb SINE Alu -10 302 1 2138 123 0 16 chr9 62948178 62948495 -54914132 + AluSx SINE Alu 1 312 0 338 116 0 43 chr9 62948529 62948598 -54914029 - Alu SINE Alu 0 301 236 3625 158 13 18 chr9 62948698 62949339 -54913288 - L1P5 LINE L1 -328 5823 5196 2397 77 0 7 chr9 62949339 62949639 -54912988 - AluY SINE Alu -13 298 1 3625 158 13 18 chr9 62949639 62950120 -54912507 - L1P5 LINE L1 -955 5196 4714 232 180 148 0 chr9 62950131 62950192 -54912435 - L1ME LINE L1 -463 5658 5589 2035 129 4 0 chr9 62950240 62950519 -54912108 + AluSq SINE Alu 1 280 -33 288 0 0 0 chr9 62950519 62950551 -54912076 + (CA)n Simple_repeat Simple_repeat 1 32 0 414 145 0 13 chr9 62950586 62950662 -54911965 - L1MA9 LINE L1 -246 6066 5992 2377 153 26 5 chr9 62950686 62951274 -54911353 + L1M3 LINE L1 4851 5452 -728 1850 59 0 0 chr9 62951275 62951494 -54911133 + AluY SINE Alu 83 301 -10 21 36 0 0 chr9 62951606 62951634 -54910993 + AT_rich Low_complexity Low_complexity 1 28 0 2301 107 0 0 chr9 62952374 62952664 -54909963 - AluSg SINE Alu -20 290 1 591 261 85 33 chr9 62953135 62953295 -54909332 - L1ME4a LINE L1 -4 6117 5967 2274 78 0 0 chr9 62953295 62953609 -54909018 - AluY SINE Alu 0 314 1 591 261 85 33 chr9 62953609 62953845 -54908782 - L1ME4a LINE L1 -154 5967 5699 2278 112 0 10 chr9 62953851 62954165 -54908462 - AluJb SINE Alu -1 311 1 180 0 0 0 chr9 62954356 62954376 -54908251 + (TTTTTG)n Simple_repeat Simple_repeat 2 21 0 654 190 11 69 chr9 62954755 62954929 -54907698 - MER5B DNA MER1_type 0 178 15 1043 41 0 0 chr9 62955200 62955321 -54907306 + AluY SINE Alu 1 121 -190 1024 138 6 30 chr9 62955430 62955597 -54907030 - AluJo SINE Alu -149 163 1 234 264 71 57 chr9 62955657 62955797 -54906830 - L1ME3A LINE L1 -64 6106 5965 1342 276 77 38 chr9 62955992 62957163 -54905464 - L1ME3A LINE L1 -326 5844 4720 1602 182 9 6 chr9 62957163 62957487 -54905140 - L1MB7 LINE L1 0 6184 5860 420 186 29 0 chr9 62957492 62957594 -54905033 - L1MA7 LINE L1 -1 6290 6186 1342 276 77 38 chr9 62957594 62957926 -54904701 - L1ME3A LINE L1 -1453 4717 4275 1065 142 6 6 chr9 62958016 62958185 -54904442 - AluSg/x SINE Alu -9 303 135 1898 137 32 14 chr9 62958193 62958503 -54904124 - AluSx SINE Alu 0 312 1 2213 253 133 44 chr9 62958503 62958651 -54903976 - L1ME3A LINE L1 -1858 4288 4155 321 152 0 0 chr9 62958651 62958717 -54903910 + L1MB8 LINE L1 6113 6178 0 2213 253 133 44 chr9 62958717 62958999 -54903628 - L1ME3A LINE L1 -1991 4155 3900 2411 72 0 34 chr9 62958999 62959320 -54903307 - AluY SINE Alu -1 310 1 2213 253 133 44 chr9 62959320 62959394 -54903233 - L1ME3A LINE L1 -2246 3900 3834 2517 175 67 19 chr9 62959394 62959930 -54902697 - MER68 LTR ERV1 0 562 1 2213 253 133 44 chr9 62959930 62961021 -54901606 - L1ME3A LINE L1 -2312 3834 2537 1696 166 0 14 chr9 62961021 62961305 -54901322 - AluJb SINE Alu -32 280 1 2213 253 133 44 chr9 62961305 62961337 -54901290 - L1ME3A LINE L1 -3609 2537 2509 206 229 62 0 chr9 62961690 62961738 -54900889 + L2 LINE L2 3262 3312 -1 195 250 0 77 chr9 62962116 62962168 -54900459 - L3 LINE CR1 0 1577 1530 23 0 0 0 chr9 62962416 62962439 -54900188 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr9 62962957 62962989 -54899638 + AT_rich Low_complexity Low_complexity 1 32 0 2224 108 10 0 chr9 62963172 62963469 -54899158 + AluSx SINE Alu 1 300 -12 225 293 17 17 chr9 62963592 62963650 -54898977 - L2 LINE L2 -9 3263 3206 22 56 0 0 chr9 62963663 62963699 -54898928 + AT_rich Low_complexity Low_complexity 1 36 0 1816 177 0 22 chr9 62963722 62964038 -54898589 - AluJb SINE Alu -3 309 1 814 200 84 44 chr9 62964838 62965088 -54897539 - L1MB4 LINE L1 -6 6174 5915 1841 125 54 7 chr9 62965088 62965368 -54897259 + AluSx SINE Alu 1 293 -19 1382 203 14 21 chr9 62965390 62965676 -54896951 + AluSc SINE Alu 1 284 -25 2250 155 13 32 chr9 62965822 62966237 -54896390 + L1MB4 LINE L1 5724 6131 -49 2556 66 3 0 chr9 62966237 62966542 -54896085 + AluSp SINE Alu 1 306 -7 2250 155 13 32 chr9 62966542 62966591 -54896036 + L1MB4 LINE L1 6131 6179 -1 214 262 16 0 chr9 62966603 62966664 -54895963 + MIR3 SINE MIR 140 201 -7 697 174 0 8 chr9 62966716 62966837 -54895790 + L1MC1 LINE L1 6205 6324 -9 218 159 91 0 chr9 62966906 62966950 -54895677 + MIR SINE MIR 214 261 -1 241 248 59 148 chr9 62966958 62967160 -54895467 - MIR SINE MIR -71 191 8 21 36 0 0 chr9 62968102 62968130 -54894497 + AT_rich Low_complexity Low_complexity 1 28 0 332 203 34 0 chr9 62968803 62968862 -54893765 + MER5C DNA MER1_type 1 61 -263 1343 32 0 0 chr9 62969538 62969696 -54892931 + L1PA5 LINE L1 5979 6136 -18 195 191 0 0 chr9 62969696 62969764 -54892863 + (TA)n Simple_repeat Simple_repeat 1 68 0 932 230 168 40 chr9 62969811 62970795 -54891832 + HAL1 LINE L1 1337 2473 -34 2065 118 3 3 chr9 62971180 62971468 -54891159 + AluSq SINE Alu 1 288 -25 431 264 125 68 chr9 62971589 62971900 -54890727 - MLT1J2 LTR MaLR -119 331 3 404 282 39 0 chr9 62971902 62972005 -54890622 + L2 LINE L2 1381 1487 -1827 391 215 43 11 chr9 62972374 62972467 -54890160 - MER5A DNA MER1_type -85 104 9 288 378 77 30 chr9 62972505 62972971 -54889656 + L2 LINE L2 2178 2665 -649 301 163 88 38 chr9 62973500 62973580 -54889047 + MIR SINE MIR 33 116 -146 21 71 0 0 chr9 62974109 62974151 -54888476 + GC_rich Low_complexity Low_complexity 1 42 0 434 162 0 0 chr9 62974344 62974418 -54888209 - MER6B DNA MER2_type -198 78 5 214 240 271 10 chr9 62974789 62974885 -54887742 + MER5A DNA MER1_type 46 166 -23 * 522 163 33 0 chr9 62974810 62974902 -54887725 - MER5A DNA MER1_type -77 112 18 2080 106 3 23 chr9 62974978 62975116 -54887511 + AluSq SINE Alu 1 140 -173 2503 54 0 16 chr9 62975116 62975431 -54887196 + AluY SINE Alu 1 310 -1 2080 106 3 23 chr9 62975431 62975595 -54887032 + AluSq SINE Alu 140 297 -16 309 51 0 0 chr9 62976394 62976433 -54886194 + (TG)n Simple_repeat Simple_repeat 2 40 0 1494 166 100 8 chr9 62977550 62977809 -54884818 + AluJo SINE Alu 1 283 -29 575 100 0 11 chr9 62977986 62978076 -54884551 - AluY SINE Alu -12 299 211 858 173 56 30 chr9 62978246 62978443 -54884184 - MER20 DNA MER1_type -16 203 2 194 93 0 130 chr9 62978971 62979025 -54883602 - L2 LINE L2 0 3313 3267 1244 124 69 18 chr9 62979215 62979433 -54883194 + MER30 DNA MER1_type 1 229 -1 1132 192 60 32 chr9 62979615 62979865 -54882762 + AluJo SINE Alu 43 299 -13 2168 78 14 0 chr9 62980185 62980467 -54882160 + AluY SINE Alu 1 286 -25 731 147 0 0 chr9 62980478 62980594 -54882033 - L1MA2 LINE L1 -2 6302 6187 683 246 23 137 chr9 62980965 62981084 -54881543 + L2 LINE L2 608 739 -2575 204 40 0 0 chr9 62981084 62981109 -54881518 + (TATG)n Simple_repeat Simple_repeat 2 26 0 683 246 23 137 chr9 62981109 62981375 -54881252 + L2 LINE L2 739 949 -2365 210 150 0 0 chr9 62981386 62981426 -54881201 + (A)n Simple_repeat Simple_repeat 1 40 0 761 100 8 23 chr9 62981445 62981575 -54881052 + L1PA16 LINE L1 5796 5923 -243 356 337 163 6 chr9 62981588 62981766 -54880861 + L2 LINE L2 3066 3271 -1 218 340 76 21 chr9 62981772 62981916 -54880711 + L2 LINE L2 3117 3268 -4 2192 98 0 58 chr9 62982346 62982674 -54879953 - AluSc SINE Alu 0 309 1 23 68 0 0 chr9 62982735 62982779 -54879848 + AT_rich Low_complexity Low_complexity 1 44 0 23 33 0 0 chr9 62982790 62982820 -54879807 + AT_rich Low_complexity Low_complexity 1 30 0 25 51 0 0 chr9 62982922 62982961 -54879666 + AT_rich Low_complexity Low_complexity 1 39 0 2101 132 7 0 chr9 62983437 62983755 -54878872 + AluSx SINE Alu 1 320 0 188 108 0 27 chr9 62984288 62984325 -54878302 + (GAAAA)n Simple_repeat Simple_repeat 4 39 0 1810 160 9 26 chr9 62985004 62985140 -54877487 - MER7A DNA MER2_type -2694 344 207 2561 124 3 3 chr9 62985140 62985503 -54877124 - THE1B LTR MaLR 0 364 2 1810 160 9 26 chr9 62985503 62985709 -54876918 - MER7A DNA MER2_type -2831 207 10 2073 82 0 0 chr9 62985709 62985964 -54876663 - AluY SINE Alu -13 298 44 4048 133 11 37 chr9 62986168 62986643 -54875984 - L1MA8 LINE L1 -5 6286 5837 2322 96 7 0 chr9 62986643 62986935 -54875692 - AluSx SINE Alu -18 294 1 4048 133 11 37 chr9 62986935 62987214 -54875413 - L1MA8 LINE L1 -454 5837 5552 1742 172 32 0 chr9 62987219 62987504 -54875123 - AluJb SINE Alu -18 294 1 2426 84 3 0 chr9 62987510 62987808 -54874819 - AluSx SINE Alu -13 299 1 2246 97 3 23 chr9 62988420 62988729 -54873898 + AluSp SINE Alu 1 303 -10 296 243 40 0 chr9 62989319 62989393 -54873234 - MER94 DNA DNA -57 77 1 2316 101 7 0 chr9 62990338 62990636 -54871991 - AluSp SINE Alu -12 301 2 21 0 0 0 chr9 62991200 62991221 -54871406 + AT_rich Low_complexity Low_complexity 1 21 0 562 235 0 39 chr9 62991980 62992159 -54870468 + AluY SINE Alu 137 308 -3 1550 213 66 6 chr9 62992161 62992508 -54870119 - MSTB LTR MaLR -58 368 1 2377 87 7 0 chr9 62992553 62992862 -54869765 - AluSp SINE Alu -2 311 1 30 48 0 16 chr9 62992958 62992990 -54869637 + AT_rich Low_complexity Low_complexity 1 33 -28 2218 95 10 7 chr9 62992990 62993284 -54869343 - AluSq SINE Alu -18 295 1 30 48 0 16 chr9 62993284 62993313 -54869314 + AT_rich Low_complexity Low_complexity 33 61 0 2413 68 3 3 chr9 62993512 62993805 -54868822 - AluSp SINE Alu -18 295 3 2138 71 41 24 chr9 62994200 62994494 -54868133 - AluY SINE Alu -12 299 1 307 188 0 0 chr9 62995439 62995487 -54867140 + MER58B DNA MER1_type 2 49 -292 1853 132 31 7 chr9 62995597 62995759 -54866868 - AluSx SINE Alu -17 295 121 2202 118 0 19 chr9 62995759 62996072 -54866555 - AluSx SINE Alu -3 309 3 1853 132 31 7 chr9 62996072 62996197 -54866430 - AluSx SINE Alu -191 121 1 1272 171 34 19 chr9 62996268 62996537 -54866090 + MER58B DNA MER1_type 69 341 0 204 214 0 24 chr9 62996551 62996593 -54866034 - L2 LINE L2 -75 3238 3198 2207 93 6 35 chr9 62996615 62996928 -54865699 + AluSq SINE Alu 1 304 -9 318 228 67 144 chr9 62996929 62997142 -54865485 - MIR SINE MIR -65 197 12 494 230 24 0 chr9 62997236 62997362 -54865265 - L1MC2 LINE L1 -23 6321 6193 1966 89 39 6 chr9 62997362 62997749 -54864878 - LTR7 LTR ERV1 0 450 1 2808 86 9 12 chr9 62997749 62998181 -54864446 - HERVH LTR ERV1 0 7713 7283 5963 93 9 3 chr9 62998185 62999066 -54863561 - HERVH LTR ERV1 -2693 5020 4135 2515 125 65 25 chr9 62999066 62999499 -54863128 + LTR7 LTR ERV1 1 450 0 2117 176 44 24 chr9 62999499 62999949 -54862678 + HERVH LTR ERV1 1 459 -7254 2006 199 51 9 chr9 63000008 63000441 -54862186 + HERVH LTR ERV1 800 1250 -6463 2334 95 0 3 chr9 63000557 63000852 -54861775 - AluSg SINE Alu -16 294 1 531 286 22 22 chr9 63001143 63001328 -54861299 - MLT1L LTR MaLR 0 615 431 2273 99 0 7 chr9 63002014 63002317 -54860310 - AluSx SINE Alu -11 301 1 665 278 137 33 chr9 63002931 63003230 -54859397 - L2 LINE L2 0 3313 2984 2087 83 0 32 chr9 63003879 63004193 -54858434 + AluSq SINE Alu 2 305 -8 731 182 58 0 chr9 63004817 63004938 -54857689 - FLAM_A SINE Alu -9 133 6 2186 116 0 19 chr9 63005072 63005390 -54857237 - AluSx SINE Alu 0 312 1 217 255 13 40 chr9 63005492 63005641 -54856986 + T-rich Low_complexity Low_complexity 1 145 0 289 233 10 97 chr9 63005765 63005868 -54856759 + MER34 LTR ERV1 22 131 -411 2337 101 0 7 chr9 63006539 63006836 -54855791 + AluSx SINE Alu 1 295 -17 1911 136 3 23 chr9 63007760 63008068 -54854559 + AluSx SINE Alu 1 302 -10 267 327 45 0 chr9 63008158 63008268 -54854359 + L2 LINE L2 1717 1831 -1483 739 144 121 0 chr9 63008433 63008565 -54854062 - MER5A DNA MER1_type -40 149 2 430 300 129 50 chr9 63008745 63008872 -54853755 - MIR SINE MIR -3 259 143 1551 183 35 11 chr9 63008872 63009156 -54853471 + AluJb SINE Alu 3 293 -19 430 300 129 50 chr9 63009156 63009268 -54853359 - MIR SINE MIR -119 143 1 187 167 24 0 chr9 63009532 63009574 -54853053 - L2 LINE L2 -6 3307 3265 900 266 143 55 chr9 63009684 63010555 -54852072 + L1MEc LINE L1 1013 1889 -4493 730 105 0 0 chr9 63010558 63010653 -54851974 - AluSp/q SINE Alu -14 299 205 299 248 148 10 chr9 63010769 63010870 -54851757 + L1MEc LINE L1 2051 2165 -4398 660 269 0 29 chr9 63010876 63011047 -54851580 + AluSg/x SINE Alu 124 289 -21 389 313 83 60 chr9 63012280 63012845 -54849782 + L1MEc LINE L1 656 1233 -4972 2452 77 0 7 chr9 63014568 63014878 -54847749 - AluSg1 SINE Alu -1 308 1 543 282 27 56 chr9 63015013 63015348 -54847279 + L1MEc LINE L1 1460 1689 -4526 865 175 144 12 chr9 63015365 63015661 -54846966 - MSTD LTR MaLR -1 395 1 246 277 87 77 chr9 63015669 63015969 -54846658 + L1MEc LINE L1 1846 2148 -4248 1320 160 124 28 chr9 63015971 63016253 -54846374 + AluSg1 SINE Alu 1 309 0 413 89 0 0 chr9 63016354 63016410 -54846217 + Alu SINE Alu 246 301 -11 265 222 56 0 chr9 63016411 63016483 -54846144 + L1MEc LINE L1 2009 2084 -4312 1016 150 7 0 chr9 63016495 63016648 -54845979 - Tigger2 DNA MER2_type -1 2717 2564 1059 169 28 0 chr9 63016654 63016832 -54845795 - Tigger2 DNA MER2_type -2534 184 2 674 202 28 42 chr9 63016836 63017061 -54845566 + L1MEc LINE L1 2213 2477 -3941 694 192 0 0 chr9 63017077 63017181 -54845446 + AluJb SINE Alu 5 108 -204 1859 186 26 42 chr9 63017228 63017684 -54844943 + L1ME2 LINE L1 5621 6069 -95 957 189 21 16 chr9 63018332 63018523 -54844104 + MLT1D LTR MaLR 314 505 0 2209 139 33 38 chr9 63018679 63019045 -54843582 + THE1B LTR MaLR 1 364 0 2171 141 96 20 chr9 63019082 63019487 -54843140 + L1MB5 LINE L1 5731 6166 -8 2388 94 0 0 chr9 63019675 63019973 -54842654 + AluSx SINE Alu 1 298 -14 2152 113 7 0 chr9 63020063 63020365 -54842262 + AluSq SINE Alu 1 304 -9 488 302 54 23 chr9 63020716 63020974 -54841653 - L1ME LINE L1 -448 5714 5449 622 154 15 8 chr9 63021061 63021191 -54841436 + CT-rich Low_complexity Low_complexity 3 133 0 617 184 269 7 chr9 63022735 63022876 -54839751 + MER5B DNA MER1_type 1 178 0 1725 90 5 5 chr9 63022941 63023163 -54839464 + AluSc SINE Alu 1 222 -87 22 0 0 0 chr9 63023311 63023333 -54839294 + AT_rich Low_complexity Low_complexity 1 22 0 1505 119 10 0 chr9 63023512 63023713 -54838914 + AluSq SINE Alu 1 203 -110 265 210 32 0 chr9 63023713 63023775 -54838852 + AluSq SINE Alu 236 299 -3 337 266 23 45 chr9 63023801 63023978 -54838649 + L1MEc LINE L1 2154 2326 -4070 748 175 33 0 chr9 63024106 63024226 -54838401 - FLAM_A SINE Alu -9 124 1 186 43 0 0 chr9 63024235 63024258 -54838369 + (TTTTC)n Simple_repeat Simple_repeat 1 23 0 194 323 32 11 chr9 63024328 63024421 -54838206 - L3 LINE CR1 -251 1326 1232 790 303 48 32 chr9 63024508 63024818 -54837809 - L3 LINE CR1 -790 787 473 578 225 135 14 chr9 63024858 63024882 -54837745 - L1ME3 LINE L1 -218 5944 5615 2340 98 0 7 chr9 63024882 63025188 -54837439 + AluSx SINE Alu 1 304 -8 946 179 131 9 chr9 63025188 63025417 -54837210 - L1MB3 LINE L1 -263 5920 5664 243 0 0 0 chr9 63026143 63026170 -54836457 + (TATG)n Simple_repeat Simple_repeat 2 28 0 1394 179 46 4 chr9 63026173 63026436 -54836191 - AluJo SINE Alu -30 282 9 2018 131 10 13 chr9 63026595 63026901 -54835726 - AluSx SINE Alu -7 305 1 676 260 21 98 chr9 63026901 63027236 -54835391 + L2 LINE L2 3005 3313 0 976 144 0 39 chr9 63027319 63027472 -54835155 + AluSg/x SINE Alu 145 291 -21 236 248 0 155 chr9 63027524 63027653 -54834974 - MIR SINE MIR -18 244 136 262 299 0 13 chr9 63027729 63027806 -54834821 - LTR67 LTR ERVL -12 545 470 272 134 412 10 chr9 63027820 63027917 -54834710 - MER69 DNA AcHobo -842 1684 1549 604 247 93 0 chr9 63028069 63028231 -54834396 + MER5A DNA MER1_type 13 189 0 277 115 16 33 chr9 63028605 63028666 -54833961 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 1051 125 7 15 chr9 63028666 63028836 -54833791 - MSTB LTR MaLR -261 167 1 345 200 0 15 chr9 63028854 63028919 -54833708 + MER5B DNA MER1_type 2 65 -113 894 202 0 0 chr9 63029368 63029536 -54833091 - FRAM SINE Alu -7 169 2 2595 156 24 32 chr9 63029544 63030044 -54832583 - L1MB8 LINE L1 0 6178 5683 1254 153 149 24 chr9 63030052 63030301 -54832326 + MER57A LTR ERV1 124 403 0 1892 187 76 19 chr9 63030301 63030400 -54832227 - L1MB8 LINE L1 -478 5700 5608 1749 190 6 10 chr9 63030400 63030711 -54831916 - AluJo SINE Alu -2 310 1 1892 187 76 19 chr9 63030711 63031096 -54831531 - L1MB8 LINE L1 -570 5608 5188 2173 102 3 0 chr9 63031836 63032142 -54830485 - AluSp SINE Alu 0 307 1 351 296 9 19 chr9 63032577 63032685 -54829942 + L2 LINE L2 3199 3305 -8 368 205 25 16 chr9 63033984 63034106 -54828521 + CT-rich Low_complexity Low_complexity 2 124 0 583 176 0 0 chr9 63034108 63034193 -54828434 - FRAM SINE Alu -37 139 55 2324 103 3 0 chr9 63034257 63034558 -54828069 + AluSp SINE Alu 1 302 -11 968 188 6 34 chr9 63034578 63034754 -54827873 + FAM SINE Alu 5 175 0 28 48 0 0 chr9 63034754 63034796 -54827831 + AT_rich Low_complexity Low_complexity 1 42 0 2456 239 70 109 chr9 63035101 63036463 -54826164 + HAL1 LINE L1 107 1414 -1093 2499 46 10 10 chr9 63036556 63036858 -54825769 + AluY SINE Alu 1 302 -9 201 127 48 32 chr9 63037553 63037616 -54825011 + (TATAA)n Simple_repeat Simple_repeat 4 67 0 365 271 25 30 chr9 63037904 63038157 -54824470 + GA-rich Low_complexity Low_complexity 1 251 0 202 71 54 36 chr9 63038212 63038268 -54824359 + GA-rich Low_complexity Low_complexity 3 59 0 219 353 20 0 chr9 63038288 63038390 -54824237 + A-rich Low_complexity Low_complexity 3 106 0 2134 273 73 8 chr9 63038580 63039291 -54823336 + HAL1 LINE L1 658 1414 -1093 2499 46 10 10 chr9 63039384 63039686 -54822941 + AluY SINE Alu 1 302 -9 24 0 0 0 chr9 63040232 63040256 -54822371 + AT_rich Low_complexity Low_complexity 1 24 0 50 0 0 0 chr9 63040395 63040445 -54822182 + AT_rich Low_complexity Low_complexity 1 50 0 393 142 73 0 chr9 63040804 63040883 -54821744 + MSTB2 LTR MaLR 290 457 0 24 32 0 0 chr9 63041100 63041131 -54821496 + AT_rich Low_complexity Low_complexity 1 31 0 689 244 92 6 chr9 63041776 63041940 -54820687 + MER5B DNA MER1_type 1 178 0 2467 66 0 3 chr9 63041974 63042275 -54820352 + AluY SINE Alu 1 300 -11 348 24 0 0 chr9 63042275 63042316 -54820311 + (TA)n Simple_repeat Simple_repeat 1 41 0 1737 122 4 0 chr9 63042463 63042744 -54819883 + AluSx SINE Alu 44 325 0 903 214 97 104 chr9 63042757 63043046 -54819581 + Charlie1a DNA MER1_type 1 287 -1168 3667 164 29 41 chr9 63043046 63043254 -54819373 + L1MB3 LINE L1 5401 5610 -573 1625 197 0 7 chr9 63043254 63043554 -54819073 + AluJo SINE Alu 1 298 -14 3667 164 29 41 chr9 63043554 63043908 -54818719 + L1MB3 LINE L1 5610 5954 -229 2001 141 7 10 chr9 63043908 63044207 -54818420 + AluSq SINE Alu 1 298 -15 3667 164 29 41 chr9 63044207 63044399 -54818228 + L1MB3 LINE L1 5954 6147 -36 1660 168 7 11 chr9 63044421 63044706 -54817921 - AluJb SINE Alu -28 284 1 316 216 69 12 chr9 63044802 63044922 -54817705 - MER96 DNA MER1_type? -6 169 1 4045 161 83 52 chr9 63044922 63045050 -54817577 + Charlie1a DNA MER1_type 301 424 -2337 2325 96 3 0 chr9 63045050 63045353 -54817274 + AluSq SINE Alu 1 304 -9 4045 161 83 52 chr9 63045353 63045672 -54816955 + Charlie1a DNA MER1_type 424 732 -2029 2030 107 3 27 chr9 63045672 63045971 -54816656 + AluSx SINE Alu 1 292 -20 4045 161 83 52 chr9 63045971 63046478 -54816149 + Charlie1a DNA MER1_type 732 1285 -170 1998 120 4 7 chr9 63046482 63046757 -54815870 - AluSx SINE Alu -15 297 24 838 145 8 0 chr9 63046859 63046990 -54815637 - AluSq/x SINE Alu -181 132 1 406 186 207 0 chr9 63046991 63047131 -54815496 + Charlie1a DNA MER1_type 1287 1455 0 403 130 78 13 chr9 63047211 63047288 -54815339 + MIR3 SINE MIR 96 177 -31 1985 135 7 0 chr9 63047305 63047594 -54815033 + AluSq SINE Alu 5 295 -18 746 271 17 0 chr9 63047828 63048009 -54814618 - Charlie1 DNA MER1_type -2563 198 15 479 229 159 25 chr9 63048181 63048273 -54814354 + HAL1 LINE L1 1069 1147 -1360 2459 87 6 0 chr9 63048273 63048584 -54814043 + AluSq SINE Alu 1 313 0 479 229 159 25 chr9 63048584 63048736 -54813891 + HAL1 LINE L1 1147 1346 -1161 840 159 0 40 chr9 63048810 63048961 -54813666 + AluSq/x SINE Alu 2 146 -166 750 283 186 30 chr9 63049073 63049540 -54813087 + HAL1 LINE L1 1593 2132 -375 300 277 23 62 chr9 63049574 63049704 -54812923 + HAL1 LINE L1 2273 2397 -110 934 173 56 30 chr9 63049972 63050169 -54812458 - MER20 DNA MER1_type -16 203 2 194 93 0 130 chr9 63050697 63050751 -54811876 - L2 LINE L2 0 3313 3267 1362 105 64 18 chr9 63050941 63051160 -54811467 + MER30 DNA MER1_type 1 229 -1 1132 192 60 32 chr9 63051342 63051592 -54811035 + AluJo SINE Alu 43 299 -13 2247 67 32 3 chr9 63051912 63052197 -54810430 + AluY SINE Alu 1 293 -18 407 302 138 0 chr9 63053436 63053595 -54809032 - MIR SINE MIR -51 211 31 255 300 118 22 chr9 63054323 63054593 -54808034 + L2 LINE L2 1403 1698 -1616 * 718 311 138 24 chr9 63054586 63055120 -54807507 - L2 LINE L2 -2 3311 2712 24 0 0 0 chr9 63057071 63057095 -54805532 + AT_rich Low_complexity Low_complexity 1 24 0 879 214 71 22 chr9 63057152 63057405 -54805222 + L1ME LINE L1 5443 5705 -461 1440 160 0 4 chr9 63057405 63057643 -54804984 - AluSq SINE Alu -1 312 76 1907 162 3 0 chr9 63057830 63058120 -54804507 + AluSx SINE Alu 1 291 -21 318 293 226 0 chr9 63058145 63058309 -54804318 + MIR SINE MIR 61 261 -1 1200 204 78 28 chr9 63059953 63060128 -54802499 + L1ME2 LINE L1 5514 5679 -487 1785 167 3 3 chr9 63060128 63060440 -54802187 - AluSq SINE Alu -1 312 1 1200 204 78 28 chr9 63060440 63060621 -54802006 + L1ME2 LINE L1 5679 5888 -278 1435 165 35 8 chr9 63060635 63060889 -54801738 + AluSg SINE Alu 11 271 -39 442 278 59 27 chr9 63060942 63061129 -54801498 + L1ME2 LINE L1 5951 6143 -21 2225 94 7 0 chr9 63061167 63061453 -54801174 + AluSx SINE Alu 1 288 -24 405 280 34 17 chr9 63061473 63061591 -54801036 + L2 LINE L2 3180 3299 -14 302 221 10 29 chr9 63061799 63061903 -54800724 + (TA)n Simple_repeat Simple_repeat 1 102 0 1498 153 8 4 chr9 63062565 63062806 -54799821 - AluJb SINE Alu -25 287 46 634 116 0 11 chr9 63062806 63062924 -54799703 + AluY SINE Alu 188 304 0 378 228 16 55 chr9 63063096 63063223 -54799404 - LTR25 LTR ERV1 -441 353 232 2382 56 0 7 chr9 63063482 63063787 -54798840 - AluY SINE Alu -8 303 1 188 228 25 66 chr9 63063788 63063867 -54798760 - MER5B DNA MER1_type -113 68 1 2065 82 4 0 chr9 63064188 63064457 -54798170 - AluSp SINE Alu 0 313 44 1932 97 0 8 chr9 63065091 63065348 -54797279 - AluSc SINE Alu -11 298 44 617 258 43 21 chr9 63065905 63066138 -54796489 - L1MC/D LINE L1 -2258 5550 5313 378 0 0 0 chr9 63066148 63066190 -54796437 + (TTA)n Simple_repeat Simple_repeat 2 43 0 1226 81 0 0 chr9 63066193 63066342 -54796285 - AluSq SINE Alu -30 283 135 2475 60 0 16 chr9 63066343 63066658 -54795969 - AluY SINE Alu -1 310 1 336 286 113 15 chr9 63066854 63066987 -54795640 - L2 LINE L2 -1149 2165 2020 1741 124 6 81 chr9 63067302 63067625 -54795002 + AluJb SINE Alu 1 299 -13 800 202 55 55 chr9 63067729 63067777 -54794850 + L1MC5 LINE L1 7611 7658 -303 2310 98 3 3 chr9 63067777 63068083 -54794544 + AluSg SINE Alu 1 306 -4 800 202 55 55 chr9 63068083 63068341 -54794286 + L1MC5 LINE L1 7657 7917 -44 1787 149 43 0 chr9 63068355 63068637 -54793990 + AluJo SINE Alu 3 296 -16 273 228 0 0 chr9 63068902 63068981 -54793646 + L1MEc LINE L1 2221 2299 -4097 702 175 33 0 chr9 63069137 63069257 -54793370 - FLAM_A SINE Alu -9 124 1 186 43 0 0 chr9 63069266 63069289 -54793338 + (TTTTC)n Simple_repeat Simple_repeat 1 23 0 207 333 32 11 chr9 63069359 63069452 -54793175 - L3 LINE CR1 -251 1326 1232 914 280 40 73 chr9 63069539 63069911 -54792716 - L3 LINE CR1 -790 787 428 2449 80 3 0 chr9 63069913 63070213 -54792414 + AluSx SINE Alu 1 301 -11 1742 172 32 0 chr9 63070219 63070504 -54792123 + AluJb SINE Alu 1 294 -18 4031 134 11 37 chr9 63070509 63070788 -54791839 + L1MA8 LINE L1 5552 5837 -454 2322 96 7 0 chr9 63070788 63071080 -54791547 + AluSx SINE Alu 1 294 -18 4031 134 11 37 chr9 63071080 63071555 -54791072 + L1MA8 LINE L1 5837 6286 -5 2073 82 0 0 chr9 63071759 63072014 -54790613 + AluY SINE Alu 44 298 -13 1810 160 9 26 chr9 63072014 63072220 -54790407 + MER7A DNA MER2_type 10 207 -2831 2554 124 3 3 chr9 63072220 63072583 -54790044 + THE1B LTR MaLR 2 364 0 1810 160 9 26 chr9 63072583 63072719 -54789908 + MER7A DNA MER2_type 207 344 -2 188 108 0 27 chr9 63073398 63073435 -54789192 + (TTTTC)n Simple_repeat Simple_repeat 4 39 0 2118 131 7 0 chr9 63073969 63074286 -54788341 - AluSx SINE Alu 0 319 1 25 51 0 0 chr9 63074762 63074801 -54787826 + AT_rich Low_complexity Low_complexity 1 39 0 24 0 0 0 chr9 63074851 63074875 -54787752 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chr9 63074905 63074935 -54787692 + AT_rich Low_complexity Low_complexity 1 30 0 24 67 0 0 chr9 63074946 63074991 -54787636 + AT_rich Low_complexity Low_complexity 1 45 0 330 133 0 0 chr9 63075039 63075103 -54787524 + Alu SINE Alu 2 50 -252 280 314 108 0 chr9 63075193 63075295 -54787332 + L2 LINE L2 2020 2132 -1182 1997 112 7 3 chr9 63075624 63075909 -54786718 - AluSg SINE Alu -24 286 1 204 267 209 0 chr9 63076249 63076335 -54786292 - L2 LINE L2 -5 3267 3164 210 278 14 42 chr9 63076407 63076479 -54786148 - L2 LINE L2 -202 3070 3001 708 245 0 57 chr9 63076691 63076883 -54785744 + MER5A DNA MER1_type 9 189 0 315 226 28 19 chr9 63077433 63077539 -54785088 - MLT1D LTR MaLR -398 107 1 1125 152 61 26 chr9 63077540 63077770 -54784857 + L1MC3 LINE L1 6623 6860 -925 1429 105 5 5 chr9 63077778 63077968 -54784659 + AluSg/x SINE Alu 101 290 -20 3742 161 37 20 chr9 63077968 63078641 -54783986 + L1MC3 LINE L1 6877 7566 -219 2031 116 3 27 chr9 63078641 63078942 -54783685 + AluSx SINE Alu 1 294 -18 3742 161 37 20 chr9 63078942 63079032 -54783595 + L1MC3 LINE L1 7566 7653 -132 979 107 40 7 chr9 63079034 63079335 -54783292 + LTR7 LTR ERV1 1 450 0 481 211 39 8 chr9 63079335 63079463 -54783164 + HERVH LTR ERV1 1 132 -7581 2573 122 10 0 chr9 63079467 63079885 -54782742 - HERVH LTR ERV1 -4153 3560 3139 * 7199 136 2 19 chr9 63079878 63081147 -54781480 - HERVH LTR ERV1 -4726 2987 1740 2439 67 0 3 chr9 63081427 63081726 -54780901 + AluY SINE Alu 9 306 -5 22 80 0 0 chr9 63081879 63081929 -54780698 + AT_rich Low_complexity Low_complexity 1 50 0 295 315 97 12 chr9 63083614 63083779 -54778848 + MIR SINE MIR 84 262 0 188 302 198 8 chr9 63083851 63083977 -54778650 - L2 LINE L2 -603 2711 2562 2420 106 0 0 chr9 63084533 63084845 -54777782 + AluSx SINE Alu 1 312 0 1992 141 10 0 chr9 63085589 63085893 -54776734 - AluSq SINE Alu -6 307 1 327 217 199 12 chr9 63086240 63086401 -54776226 + L1MC/D LINE L1 5340 5530 -2278 1371 248 87 73 chr9 63086476 63087399 -54775228 - L1MC4 LINE L1 0 8042 7107 766 281 63 4 chr9 63087399 63087669 -54774958 + L1MC/D LINE L1 5524 5809 -1999 1795 166 3 7 chr9 63087669 63087959 -54774668 + AluJo SINE Alu 1 289 -23 1450 201 4 14 chr9 63088288 63088567 -54774060 - AluJo SINE Alu -36 276 1 317 324 49 22 chr9 63088966 63089151 -54773476 + L1ME LINE L1 5476 5665 -456 1717 96 0 0 chr9 63089151 63089371 -54773256 + AluSx SINE Alu 1 220 -92 709 153 0 0 chr9 63089372 63089483 -54773144 + AluSg/x SINE Alu 190 300 -12 2303 59 28 3 chr9 63089852 63090138 -54772489 + AluY SINE Alu 1 293 -18 2193 68 0 4 chr9 63090571 63090837 -54771790 - AluY SINE Alu -46 265 1 310 237 140 32 chr9 63090881 63090974 -54771653 - HAL1 LINE L1 -4 2503 2401 844 271 124 36 chr9 63091123 63091647 -54770980 - HAL1 LINE L1 -338 2169 1600 690 264 65 14 chr9 63091676 63091892 -54770735 + L2 LINE L2 1463 1689 -1625 1087 169 42 33 chr9 63091988 63092201 -54770426 + AluJo SINE Alu 86 300 -12 661 282 133 0 chr9 63092205 63092453 -54770174 + L2 LINE L2 1790 2070 -1244 399 187 179 24 chr9 63092476 63092599 -54770028 - Charlie5 DNA MER1_type 0 2624 2483 1361 222 208 27 chr9 63092641 63093236 -54769391 + L1MC4 LINE L1 7190 7892 -150 444 300 147 9 chr9 63093334 63093667 -54768960 + L2 LINE L2 1608 1986 -1328 1358 307 114 12 chr9 63093923 63094833 -54767794 - L2 LINE L2 -5 3308 2305 2163 116 0 7 chr9 63095097 63095391 -54767236 - AluSx SINE Alu -20 292 1 296 28 0 0 chr9 63096460 63096496 -54766131 - U6 snRNA snRNA -71 36 1 1220 161 158 0 chr9 63096518 63096810 -54765817 + MER2 DNA MER2_type 1 338 -7 404 244 78 43 chr9 63096893 63097008 -54765619 + L2 LINE L2 3136 3254 -18 227 345 9 55 chr9 63097199 63097309 -54765318 - MIR SINE MIR -62 146 42 452 225 77 44 chr9 63099765 63099947 -54762680 - LTR8A LTR ERV1 0 727 540 * 758 176 115 22 chr9 63099946 63100128 -54762499 - LTR8 LTR ERV1 -492 199 1 4772 46 10 2 chr9 63100198 63100784 -54761843 - LTR10C LTR ERV1 0 591 1 2802 203 98 60 chr9 63100850 63101664 -54760963 - MER21B LTR ERV1 -18 845 1 21 0 0 0 chr9 63103724 63103745 -54758882 + AT_rich Low_complexity Low_complexity 1 21 0 1294 256 160 86 chr9 63103850 63104796 -54757831 + HAL1 LINE L1 11 886 -1621 1096 82 7 0 chr9 63104796 63104943 -54757684 + L1PA7 LINE L1 5990 6137 -17 1294 256 160 86 chr9 63104943 63105178 -54757449 + HAL1 LINE L1 886 1102 -1405 1828 167 0 11 chr9 63105178 63105460 -54757167 + AluJo SINE Alu 3 281 -31 225 0 0 0 chr9 63105465 63105490 -54757137 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1294 256 160 86 chr9 63105490 63105728 -54756899 + HAL1 LINE L1 1105 1542 -965 1062 194 63 44 chr9 63105755 63106070 -54756557 + L1MB8 LINE L1 4734 5054 -1092 3461 168 97 11 chr9 63106092 63106890 -54755737 + L1MB8 LINE L1 5296 6161 -17 1157 237 152 39 chr9 63106907 63107527 -54755100 + HAL1 LINE L1 1529 2218 -289 2261 94 0 20 chr9 63107724 63108023 -54754604 - AluSq SINE Alu -20 293 1 968 146 57 16 chr9 63108023 63108215 -54754412 + MER30 DNA MER1_type 3 202 -28 315 283 63 57 chr9 63108246 63108405 -54754222 + HAL1 LINE L1 2348 2507 0 354 321 46 65 chr9 63109602 63109650 -54752977 + HAL1b LINE L1 12 59 -1289 2337 72 17 3 chr9 63109650 63109942 -54752685 + AluSp SINE Alu 1 296 -17 354 321 46 65 chr9 63109942 63110217 -54752410 + HAL1b LINE L1 59 329 -1019 588 251 137 78 chr9 63110239 63110324 -54752303 + HAL1b LINE L1 410 488 -860 2071 116 0 0 chr9 63110324 63110601 -54752026 + AluSg SINE Alu 2 278 -32 201 44 22 44 chr9 63110603 63110648 -54751979 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 588 251 137 78 chr9 63110648 63111062 -54751565 + HAL1b LINE L1 488 942 -406 1798 187 102 19 chr9 63111113 63111535 -54751092 - MSTB2 LTR MaLR 0 457 1 595 234 43 33 chr9 63112834 63113018 -54749609 + MLT1D LTR MaLR 1 186 -319 2470 78 0 0 chr9 63113025 63113334 -54749293 + AluY SINE Alu 1 309 -2 457 268 18 12 chr9 63113339 63113503 -54749124 + L1MC4 LINE L1 6916 7080 -962 1303 217 139 16 chr9 63113509 63114039 -54748588 + L1MC4 LINE L1 7162 7713 -95 946 227 101 52 chr9 63114140 63114319 -54748308 + L1ME1 LINE L1 5756 5925 -241 2018 134 14 0 chr9 63114319 63114602 -54748025 - AluSx SINE Alu -25 287 1 946 227 101 52 chr9 63114602 63114810 -54747817 + L1ME1 LINE L1 5925 6162 -4 1034 183 5 5 chr9 63114961 63115147 -54747480 - AluJb SINE Alu -31 281 96 1144 170 89 0 chr9 63115289 63115559 -54747068 - L1MB3 LINE L1 -8 6175 5882 1531 147 27 17 chr9 63115871 63116171 -54746456 + L1MA4 LINE L1 5998 6300 0 202 110 14 68 chr9 63116384 63116457 -54746170 + (TTTA)n Simple_repeat Simple_repeat 1 69 0 23 0 0 0 chr9 63116457 63116480 -54746147 + AT_rich Low_complexity Low_complexity 1 23 0 239 56 0 0 chr9 63117756 63117792 -54744835 - L1MA6 LINE L1 -10 6290 6255 226 274 229 13 chr9 63117892 63117995 -54744632 - MIR SINE MIR -45 217 138 1353 194 13 74 chr9 63117995 63118076 -54744551 - AluJo SINE Alu -22 290 206 1670 157 3 47 chr9 63118076 63118395 -54744232 - AluJo SINE Alu -7 305 1 1353 194 13 74 chr9 63118395 63118480 -54744147 - AluJo SINE Alu -106 206 117 1852 169 0 3 chr9 63118480 63118776 -54743851 - AluSx SINE Alu -17 295 1 1353 194 13 74 chr9 63118776 63118917 -54743710 - AluJo SINE Alu -195 117 1 226 274 229 13 chr9 63118917 63118966 -54743661 - MIR SINE MIR -124 138 32 204 273 0 0 chr9 63118968 63119045 -54743582 + (TA)n Simple_repeat Simple_repeat 1 77 0 2479 80 0 0 chr9 63119045 63119347 -54743280 - AluY SINE Alu -9 302 1 499 241 90 61 chr9 63119356 63119667 -54742960 - L1ME4a LINE L1 -181 5940 5621 184 286 71 18 chr9 63120061 63120117 -54742510 + L2 LINE L2 3201 3259 -13 192 350 80 10 chr9 63120319 63120419 -54742208 - MIR SINE MIR -67 141 35 316 137 0 0 chr9 63121117 63121168 -54741459 - L1PA14 LINE L1 -16 6145 6095 10866 177 32 4 chr9 63121180 63124310 -54738317 - L1PA12 LINE L1 -2143 5441 2227 21 0 0 0 chr9 63124551 63124572 -54738055 + AT_rich Low_complexity Low_complexity 1 21 0 1072 206 50 10 chr9 63124935 63125236 -54737391 + L1ME1 LINE L1 2707 3019 -3127 2060 114 11 0 chr9 63125236 63125517 -54737110 - AluSx SINE Alu -7 305 22 687 117 19 10 chr9 63125519 63125622 -54737005 + AluJb SINE Alu 190 293 -19 1048 249 98 9 chr9 63125630 63126068 -54736559 + L1ME1 LINE L1 3050 3526 -2620 2309 216 75 44 chr9 63126082 63126896 -54735731 + L1ME1 LINE L1 3593 4431 -1715 2059 198 106 41 chr9 63126938 63127024 -54735603 + L1ME1 LINE L1 5392 5471 -695 2270 99 0 0 chr9 63127024 63127316 -54735311 + AluSg1 SINE Alu 1 292 -17 2059 198 106 41 chr9 63127316 63127940 -54734687 + L1ME1 LINE L1 5471 6148 -18 22 0 0 0 chr9 63128083 63128105 -54734522 + AT_rich Low_complexity Low_complexity 1 22 0 488 144 0 11 chr9 63129239 63129329 -54733298 - Tigger4(Zombi) DNA MER2_type -3 2728 2640 1854 133 8 0 chr9 63129329 63129592 -54733035 - AluSq SINE Alu -48 265 1 907 220 13 30 chr9 63129679 63129911 -54732716 - MER82 DNA MER2_type -415 238 11 551 299 159 14 chr9 63129951 63130373 -54732254 - HAL1 LINE L1 -962 1545 1063 1739 109 102 0 chr9 63131217 63131505 -54731122 + AluSx SINE Alu 1 314 0 2457 52 7 16 chr9 63131801 63132108 -54730519 - AluY SINE Alu -7 304 1 33 0 0 23 chr9 63132170 63132192 -54730435 + AT_rich Low_complexity Low_complexity 1 22 -21 2155 101 21 0 chr9 63132192 63132479 -54730148 + AluSp SINE Alu 1 293 -20 33 0 0 23 chr9 63132479 63132500 -54730127 + AT_rich Low_complexity Low_complexity 22 43 0 1698 142 25 11 chr9 63132701 63132983 -54729644 - AluJb SINE Alu -26 286 1 241 185 25 25 chr9 63133058 63133139 -54729488 + (TA)n Simple_repeat Simple_repeat 1 81 0 401 30 90 30 chr9 63133196 63133329 -54729298 + (TA)n Simple_repeat Simple_repeat 2 142 0 2005 117 31 0 chr9 63133441 63133731 -54728896 - AluSg1 SINE Alu -10 299 1 26 50 0 0 chr9 63134728 63134768 -54727859 + AT_rich Low_complexity Low_complexity 1 40 0 610 221 23 8 chr9 63136257 63136388 -54726239 - FLAM_A SINE Alu 0 133 1 802 265 22 0 chr9 63136784 63136969 -54725658 - MER5A DNA MER1_type 0 189 1 26 0 0 0 chr9 63137334 63137360 -54725267 + AT_rich Low_complexity Low_complexity 1 26 0 227 278 241 33 chr9 63139032 63139244 -54723383 - L2 LINE L2 0 3272 3017 2155 103 3 7 chr9 63140498 63140790 -54721837 + AluSx SINE Alu 1 291 -21 762 261 60 25 chr9 63141025 63141393 -54721234 + L1MC4a LINE L1 5529 5824 -297 33 56 0 0 chr9 63141774 63141828 -54720799 + AT_rich Low_complexity Low_complexity 1 54 0 1435 186 82 7 chr9 63141883 63142162 -54720465 + AluJb SINE Alu 1 300 -12 240 254 88 35 chr9 63142924 63143038 -54719589 - L3b LINE CR1 -216 1367 1248 21 0 0 0 chr9 63144561 63144582 -54718045 + AT_rich Low_complexity Low_complexity 1 21 0 631 218 8 0 chr9 63145168 63145292 -54717335 - FLAM_A SINE Alu -5 137 13 623 291 213 26 chr9 63145565 63146190 -54716437 - L2 LINE L2 -356 2958 2217 12254 92 17 51 chr9 63146649 63149091 -54713536 - L1P3 LINE L1 -4012 2449 2 311 331 71 12 chr9 63149112 63149281 -54713346 - L1M4 LINE L1 -1003 5143 4965 690 173 129 22 chr9 63149442 63149581 -54713046 - FRAM SINE Alu -12 154 1 202 211 0 0 chr9 63149754 63149792 -54712835 - L2 LINE L2 -15 3298 3261 228 242 48 32 chr9 63149813 63149875 -54712752 + MIR SINE MIR 14 76 -186 413 258 31 0 chr9 63150019 63150116 -54712511 + MIR SINE MIR 163 262 0 2126 122 16 13 chr9 63150965 63151269 -54711358 + AluSx SINE Alu 1 305 -7 1181 153 6 0 chr9 63151278 63151454 -54711173 + AluSg/x SINE Alu 121 297 -15 525 207 129 7 chr9 63151991 63152131 -54710496 + MER58A DNA MER1_type 1 157 0 815 121 0 40 chr9 63152524 63152648 -54709979 + FLAM_C SINE Alu 7 125 -18 2076 102 30 0 chr9 63152672 63152975 -54709652 + AluSp SINE Alu 1 312 -1 560 158 43 86 chr9 63153015 63153099 -54709528 + MER58B DNA MER1_type 4 81 -260 1881 128 0 62 chr9 63153099 63153419 -54709208 - AluSx SINE Alu -12 300 1 560 158 43 86 chr9 63153419 63153473 -54709154 + MER58B DNA MER1_type 81 136 -205 250 270 95 95 chr9 63153772 63153985 -54708642 + MIR3 SINE MIR 2 212 -50 1190 198 32 0 chr9 63154076 63154293 -54708334 + MER58B DNA MER1_type 118 341 0 627 183 10 0 chr9 63154301 63154405 -54708222 + MER5A DNA MER1_type 1 105 -84 558 261 52 26 chr9 63154419 63154649 -54707978 + Charlie7 DNA MER1_type 438 673 -1939 25 90 0 0 chr9 63157425 63157492 -54705135 + GC_rich Low_complexity Low_complexity 1 67 0 397 244 99 93 chr9 63158094 63158266 -54704361 - MER5B DNA MER1_type 0 178 6 1773 173 130 8 chr9 63159197 63159550 -54703077 - MSTD LTR MaLR 0 396 1 5149 236 35 61 chr9 63159556 63159641 -54702986 - MSTD-int LTR MaLR 0 1735 1649 1687 172 0 11 chr9 63159641 63159951 -54702676 - AluJb SINE Alu 0 308 2 5149 236 35 61 chr9 63159951 63161246 -54701381 - MSTD-int LTR MaLR -86 1649 389 1341 137 24 5 chr9 63161246 63161458 -54701169 + Tigger2 DNA MER2_type 2503 2718 0 855 215 139 43 chr9 63161609 63162019 -54700608 + MLT1D LTR MaLR 1 505 0 1072 276 89 22 chr9 63162034 63162403 -54700224 + MLT1K LTR MaLR 193 586 -2 695 134 30 15 chr9 63162438 63162572 -54700055 + MER53 DNA DNA 37 172 -17 1718 147 0 36 chr9 63163939 63164246 -54698381 + AluJb SINE Alu 6 301 -11 2005 122 3 10 chr9 63164477 63164773 -54697854 + AluSx SINE Alu 1 294 -18 2182 90 7 3 chr9 63164773 63165072 -54697555 + AluY SINE Alu 1 300 -11 1734 185 21 13 chr9 63165236 63165614 -54697013 + L1MA4 LINE L1 5863 6243 -57 835 199 15 10 chr9 63165616 63165817 -54696810 + L1MA4 LINE L1 6042 6243 -57 835 199 15 10 chr9 63165819 63166020 -54696607 + L1MA4 LINE L1 6042 6243 -57 823 204 15 10 chr9 63166022 63166223 -54696404 + L1MA4 LINE L1 6042 6243 -57 835 199 15 10 chr9 63166225 63166426 -54696201 + L1MA4 LINE L1 6042 6243 -57 841 198 15 10 chr9 63166428 63166630 -54695997 + L1MA4 LINE L1 6042 6244 -56 * 850 180 15 19 chr9 63166627 63166833 -54695794 + L1MA4 LINE L1 6040 6244 -56 844 181 15 19 chr9 63166830 63167035 -54695592 + L1MA4 LINE L1 6040 6243 -57 * 841 198 15 10 chr9 63167037 63167239 -54695388 + L1MA4 LINE L1 6042 6244 -56 * 861 175 15 19 chr9 63167236 63167442 -54695185 + L1MA4 LINE L1 6040 6244 -56 1011 167 31 23 chr9 63167442 63167697 -54694930 + L1MA4 LINE L1 6040 6299 -1 204 97 0 0 chr9 63167716 63167747 -54694880 + (CA)n Simple_repeat Simple_repeat 2 32 0 273 206 10 98 chr9 63167750 63167812 -54694815 + MER20B DNA MER1_type 1 52 -731 2118 111 0 0 chr9 63167812 63168100 -54694527 - AluSq SINE Alu -20 293 6 273 206 10 98 chr9 63168100 63168139 -54694488 + MER20B DNA MER1_type 52 93 -690 2130 116 0 10 chr9 63168166 63168477 -54694150 - AluSx SINE Alu -4 308 1 1380 253 92 19 chr9 63168706 63169173 -54693454 - MLT1J LTR MaLR -8 503 3 2197 96 0 16 chr9 63169215 63169518 -54693109 - AluSq SINE Alu -15 298 1 816 211 119 116 chr9 63169596 63170165 -54692462 + MLT1G LTR MaLR 20 590 0 1951 108 31 7 chr9 63170494 63170781 -54691846 + AluSp SINE Alu 1 294 -19 242 54 0 27 chr9 63170999 63171036 -54691591 + (CCA)n Simple_repeat Simple_repeat 3 38 0 23 0 0 0 chr9 63171559 63171582 -54691045 + AT_rich Low_complexity Low_complexity 1 23 0 32 0 0 0 chr9 63171610 63171642 -54690985 + AT_rich Low_complexity Low_complexity 1 32 0 548 129 62 143 chr9 63171693 63171810 -54690817 - Charlie1 DNA MER1_type -7 2754 2660 2188 119 0 0 chr9 63171810 63172122 -54690505 + AluSx SINE Alu 1 312 0 548 129 62 143 chr9 63172122 63172214 -54690413 - Charlie1 DNA MER1_type -101 2660 2562 * 1102 213 25 8 chr9 63172210 63172454 -54690173 + LTR40b LTR ERVL 215 462 0 1187 192 154 3 chr9 63172454 63172792 -54689835 + Charlie4a DNA MER1_type 87 475 -33 5356 46 8 1 chr9 63172958 63173604 -54689023 + L1PA5 LINE L1 5501 6150 -4 568 171 68 41 chr9 63173634 63173780 -54688847 + AluJo SINE Alu 79 228 -84 2000 107 4 0 chr9 63174766 63175046 -54687581 - AluSx SINE Alu -20 292 12 21 0 0 0 chr9 63175064 63175085 -54687542 + AT_rich Low_complexity Low_complexity 1 21 0 1815 145 3 23 chr9 63175684 63175816 -54686811 + AluSx SINE Alu 5 138 -174 2310 74 0 0 chr9 63175816 63176115 -54686512 + AluY SINE Alu 1 299 -12 1815 145 3 23 chr9 63176115 63176292 -54686335 + AluSx SINE Alu 138 308 -4 294 148 0 0 chr9 63176292 63176346 -54686281 + (GGGA)n Simple_repeat Simple_repeat 3 56 0 2099 178 22 40 chr9 63177029 63177473 -54685154 - MER74A LTR ERVL 0 558 123 2244 88 0 0 chr9 63177552 63177847 -54684780 + AluY SINE Alu 8 302 -9 416 228 24 63 chr9 63177853 63177980 -54684647 - MER74B LTR ERVL -428 194 73 1733 125 91 3 chr9 63177980 63178267 -54684360 + AluJb SINE Alu 1 312 0 2087 102 10 3 chr9 63178693 63178987 -54683640 - AluSx SINE Alu -16 296 1 1471 242 48 30 chr9 63179030 63179496 -54683131 - MLT1B LTR MaLR -3 387 4 326 103 4 6 chr9 63179527 63179797 -54682830 + AluSq SINE Alu 1 335 0 194 294 22 43 chr9 63179799 63179891 -54682736 - L2 LINE L2 -26 3287 3198 637 288 133 17 chr9 63179989 63180222 -54682405 - MIR SINE MIR -1 261 2 2006 125 0 16 chr9 63180560 63180863 -54681764 - AluSx SINE Alu -14 298 1 422 250 28 35 chr9 63180966 63181180 -54681447 + LTR45 LTR ERV1 314 522 -9 637 228 74 30 chr9 63181271 63181473 -54681154 - L1ME2 LINE L1 -10 6154 5944 1820 161 0 31 chr9 63182328 63182645 -54679982 + AluJo SINE Alu 1 307 -5 1230 232 67 3 chr9 63182645 63182960 -54679667 + L1ME1 LINE L1 3888 4222 -1924 1824 210 65 53 chr9 63183061 63183414 -54679213 + L1ME1 LINE L1 5574 5921 -413 2033 125 0 3 chr9 63183414 63183711 -54678916 + AluSx SINE Alu 1 296 -16 1824 210 65 53 chr9 63183711 63183970 -54678657 + L1ME1 LINE L1 5921 6334 0 2034 112 0 3 chr9 63183982 63184293 -54678334 + AluSx SINE Alu 1 310 0 299 350 22 0 chr9 63184362 63184499 -54678128 - L1MC4a LINE L1 -1870 5938 5799 1576 156 163 28 chr9 63186109 63186546 -54676081 + LTR54B LTR ERV1 1 496 -2 1078 240 16 80 chr9 63186820 63187195 -54675432 + MLT1A2 LTR MaLR 1 351 -23 211 270 27 14 chr9 63187259 63187333 -54675294 - L2 LINE L2 -2 3311 3237 270 273 23 97 chr9 63187803 63187979 -54674648 + MIR3 SINE MIR 6 168 -40 283 233 0 41 chr9 63188667 63188813 -54673814 + GA-rich Low_complexity Low_complexity 1 140 0 210 200 35 26 chr9 63188877 63188992 -54673635 + GA-rich Low_complexity Low_complexity 1 116 0 197 363 50 30 chr9 63190658 63190961 -54671666 + L2 LINE L2 2478 2786 -528 243 222 19 0 chr9 63191438 63191492 -54671135 + LTR33A LTR ERVL 440 494 -29 2116 108 0 0 chr9 63192045 63192340 -54670287 + AluSg SINE Alu 1 295 -15 1705 131 52 0 chr9 63193212 63193510 -54669117 - AluSx SINE Alu 0 312 1 449 250 112 7 chr9 63193764 63193916 -54668711 + MLT1G1 LTR MaLR 1 168 -399 1150 216 129 47 chr9 63193923 63194006 -54668621 + MLT1C LTR MaLR 8 83 -384 2102 101 0 23 chr9 63194006 63194336 -54668291 + AluSx SINE Alu 1 312 0 1150 216 129 47 chr9 63194336 63194677 -54667950 + MLT1C LTR MaLR 83 467 0 800 280 120 12 chr9 63194723 63195048 -54667579 + MLT1G1 LTR MaLR 236 595 0 2085 108 0 3 chr9 63196172 63196468 -54666159 - AluSg SINE Alu -15 295 1 2141 105 0 0 chr9 63196583 63196877 -54665750 + AluSg1 SINE Alu 7 300 -9 325 179 51 51 chr9 63197281 63197359 -54665268 + MER112 DNA MER1_type 8 85 -175 1125 155 5 10 chr9 63197480 63197673 -54664954 - AluJo SINE Alu -84 228 37 2050 102 24 3 chr9 63197708 63198002 -54664625 + AluSx SINE Alu 1 300 -12 230 259 201 22 chr9 63198004 63198143 -54664484 + MER112 DNA MER1_type 91 254 -6 299 299 86 10 chr9 63198178 63198375 -54664252 + L1ME2 LINE L1 5686 5897 -267 1691 151 52 41 chr9 63199002 63199346 -54663281 - MER7A DNA MER2_type 0 346 1 188 294 119 40 chr9 63199581 63199707 -54662920 - MER5B DNA MER1_type -37 141 6 781 175 169 0 chr9 63200050 63200227 -54662400 - MER3 DNA MER1_type 0 209 3 180 0 0 0 chr9 63200547 63200567 -54662060 + (A)n Simple_repeat Simple_repeat 1 20 0 274 259 54 0 chr9 63200715 63200827 -54661800 - L1MC5 LINE L1 -64 7897 7780 218 371 19 0 chr9 63200977 63201082 -54661545 + MIR SINE MIR 146 252 -10 1713 159 71 37 chr9 63201239 63201592 -54661035 + MLT1A1 LTR MaLR 1 365 0 739 268 85 17 chr9 63201706 63201941 -54660686 - MIR SINE MIR 0 262 12 1905 118 0 7 chr9 63202449 63202729 -54659898 + AluSp SINE Alu 1 278 -35 913 113 0 0 chr9 63203132 63203256 -54659371 + AluY SINE Alu 59 182 -129 267 104 62 21 chr9 63203846 63203894 -54658733 + FLAM_A SINE Alu 9 58 -74 312 200 71 24 chr9 63203932 63204017 -54658610 + MIR3 SINE MIR 113 201 -7 4575 137 22 31 chr9 63205482 63206261 -54656366 + LTR1 LTR ERV1 1 772 -13 2254 73 0 29 chr9 63206261 63206575 -54656052 - AluY SINE Alu -6 305 1 343 308 105 0 chr9 63206779 63206922 -54655705 - L3 LINE CR1 -124 1453 1296 1955 117 6 32 chr9 63207349 63207665 -54654962 + AluSq SINE Alu 1 308 -5 1129 213 119 14 chr9 63207926 63208279 -54654348 + L1MC4a LINE L1 7419 7808 0 2039 106 17 0 chr9 63208354 63208646 -54653981 + AluSg SINE Alu 1 297 -13 254 250 0 0 chr9 63208919 63208975 -54653652 + L1MC5 LINE L1 7030 7085 -876 2151 113 3 0 chr9 63208976 63209287 -54653340 - AluSq SINE Alu -1 312 1 642 86 0 0 chr9 63209386 63209479 -54653148 + AluSg/x SINE Alu 215 307 -3 397 279 33 0 chr9 63209556 63209678 -54652949 + L1MC5 LINE L1 7312 7437 -524 1993 123 0 3 chr9 63209692 63209993 -54652634 - AluY SINE Alu -11 300 1 300 252 321 21 chr9 63210013 63210303 -54652324 + L1MC4 LINE L1 7044 7420 -622 351 196 71 9 chr9 63210311 63210423 -54652204 + L1MC4 LINE L1 7469 7587 -455 297 218 89 69 chr9 63210435 63210536 -54652091 - HAL1 LINE L1 -1700 807 705 2342 77 0 0 chr9 63211492 63211789 -54650838 - AluSg SINE Alu -13 297 1 198 0 0 0 chr9 63213198 63213220 -54649407 + (A)n Simple_repeat Simple_repeat 1 22 0 204 67 0 0 chr9 63213394 63213424 -54649203 + (A)n Simple_repeat Simple_repeat 1 30 0 1119 272 33 20 chr9 63214303 63214660 -54647967 + L1MB7 LINE L1 2568 2934 -3212 2081 91 0 72 chr9 63214660 63214991 -54647636 + AluSx SINE Alu 1 307 -5 1119 272 33 20 chr9 63214991 63215093 -54647534 + L1MB7 LINE L1 2934 3033 -3113 * 2623 203 21 102 chr9 63215089 63215400 -54647227 + L1MCa LINE L1 18 353 -6073 2081 109 6 6 chr9 63215400 63215713 -54646914 + AluSp SINE Alu 1 313 0 2623 203 21 102 chr9 63215713 63216145 -54646482 + L1MCa LINE L1 353 701 -5725 4091 176 39 36 chr9 63216152 63217215 -54645412 + L1MB7 LINE L1 4830 5892 -292 2301 81 0 0 chr9 63217215 63217512 -54645115 + AluSx SINE Alu 3 299 -13 4091 176 39 36 chr9 63217512 63217806 -54644821 + L1MB7 LINE L1 5892 6184 0 270 276 76 38 chr9 63217880 63218065 -54644562 + MIR SINE MIR 23 214 -48 1194 252 106 99 chr9 63218672 63219364 -54643263 + MER21B LTR ERV1 13 712 -151 2401 50 3 0 chr9 63219364 63219662 -54642965 + AluY SINE Alu 1 299 -12 1194 252 106 99 chr9 63219662 63219714 -54642913 + MER21B LTR ERV1 712 762 -101 247 264 187 58 chr9 63219744 63219899 -54642728 - MIR3 SINE MIR -17 191 17 236 286 14 0 chr9 63220770 63220840 -54641787 + MER117 DNA MER1_type 109 179 -18 1105 221 9 0 chr9 63221552 63221769 -54640858 - MER20 DNA MER1_type 0 219 1 31 0 0 0 chr9 63222160 63222191 -54640436 + AT_rich Low_complexity Low_complexity 1 31 0 2004 122 0 3 chr9 63222197 63222491 -54640136 + AluSq SINE Alu 1 293 -20 21 36 0 0 chr9 63222586 63222614 -54640013 + AT_rich Low_complexity Low_complexity 1 28 0 1560 129 80 11 chr9 63222616 63222900 -54639727 + AluSg SINE Alu 1 302 0 1961 120 10 7 chr9 63222918 63223217 -54639410 + AluSx SINE Alu 1 300 -12 183 80 0 0 chr9 63223223 63223248 -54639379 + (CA)n Simple_repeat Simple_repeat 2 26 0 298 308 79 23 chr9 63225003 63225217 -54637410 + L1ME1 LINE L1 5934 6159 -7 556 241 59 79 chr9 63225257 63225411 -54637216 + L1ME1 LINE L1 5788 5944 -222 23123 50 6 1 chr9 63225411 63229069 -54633558 - L1PA6 LINE L1 -6 6148 2473 556 241 59 79 chr9 63229069 63229254 -54633373 + L1ME1 LINE L1 5944 6120 -46 292 224 0 0 chr9 63229408 63229475 -54633152 - MER33 DNA MER1_type 0 324 258 1419 91 0 0 chr9 63230329 63230526 -54632101 + AluSp SINE Alu 117 313 0 2059 90 24 7 chr9 63230658 63230947 -54631680 + AluSc SINE Alu 1 294 -15 324 280 144 0 chr9 63231075 63231193 -54631434 + L2 LINE L2 3170 3304 -9 187 300 56 11 chr9 63231906 63231996 -54630631 + MIR SINE MIR 169 262 0 353 279 39 39 chr9 63232225 63232328 -54630299 + MIR SINE MIR 103 208 -54 1587 182 135 49 chr9 63232328 63232757 -54629870 - MER31B LTR ERV1 0 466 1 353 279 39 39 chr9 63232757 63232782 -54629845 + MIR SINE MIR 207 231 -31 215 100 17 67 chr9 63233205 63233265 -54629362 + (CAAAA)n Simple_repeat Simple_repeat 1 57 0 250 292 88 18 chr9 63233668 63233781 -54628846 + MIR SINE MIR 67 187 -75 1547 174 23 17 chr9 63234963 63235262 -54627365 - AluJo SINE Alu -11 301 1 2276 86 3 0 chr9 63235269 63235570 -54627057 - AluSp SINE Alu -11 302 1 865 168 41 10 chr9 63235774 63235970 -54626657 + L1ME2 LINE L1 5734 5935 -229 1215 137 0 5 chr9 63235970 63236160 -54626467 + AluSx SINE Alu 1 189 -123 1611 81 9 0 chr9 63236160 63236371 -54626256 - AluY SINE Alu -98 213 1 372 240 8 101 chr9 63236376 63236413 -54626214 - MER5B DNA MER1_type -44 134 95 1475 118 3 167 chr9 63236413 63236785 -54625842 - AluJb SINE Alu -1 311 1 372 240 8 101 chr9 63236785 63236876 -54625751 - MER5B DNA MER1_type -83 95 18 257 335 80 28 chr9 63236941 63237153 -54625474 - L1MC4a LINE L1 -1897 5911 5689 1523 167 19 0 chr9 63237156 63237414 -54625213 + MER2 DNA MER2_type 1 263 -82 1896 142 0 13 chr9 63237430 63237733 -54624894 - AluSx SINE Alu -13 299 1 1005 239 29 45 chr9 63237822 63238132 -54624495 + MER46C DNA MER2_type 8 312 -26 971 264 46 19 chr9 63238289 63238596 -54624031 + L1MC4a LINE L1 7180 7494 -314 447 183 197 0 chr9 63238572 63238714 -54623913 + L1MD3 LINE L1 7823 7992 -3 * 25 0 0 0 chr9 63238779 63238804 -54623823 + AT_rich Low_complexity Low_complexity 1 25 0 1997 115 10 7 chr9 63238814 63239109 -54623518 + AluSg SINE Alu 2 297 -13 414 272 115 8 chr9 63239180 63239411 -54623216 - L1MC4a LINE L1 -772 5394 5258 12289 92 20 0 chr9 63239527 63242001 -54620626 - L1PA7 LINE L1 -1 6153 3636 455 123 27 64 chr9 63242108 63242295 -54620332 + (CACAC)n Simple_repeat Simple_repeat 1 180 0 524 298 38 50 chr9 63242645 63242698 -54619929 - MIR SINE MIR -26 236 184 1521 98 176 12 chr9 63242698 63242954 -54619673 - AluY SINE Alu -13 298 1 524 298 38 50 chr9 63242954 63243138 -54619489 - MIR SINE MIR -78 184 2 347 242 182 23 chr9 63243215 63243347 -54619280 - MER112 DNA MER1_type -100 160 8 2311 227 16 6 chr9 63243835 63244338 -54618289 + L1MB2 LINE L1 5610 6117 -54 26 30 0 0 chr9 63244973 63245006 -54617621 + AT_rich Low_complexity Low_complexity 1 33 0 2206 90 6 10 chr9 63245114 63245426 -54617201 - AluY SINE Alu 0 311 1 808 136 8 8 chr9 63245435 63245567 -54617060 - FRAM SINE Alu -24 152 21 374 220 0 11 chr9 63246801 63246892 -54615735 - MER33 DNA MER1_type 0 324 235 3820 172 24 61 chr9 63246892 63247050 -54615577 + L1MB7 LINE L1 5323 5485 -699 1969 119 46 0 chr9 63247050 63247335 -54615292 + AluSx SINE Alu 2 299 -13 2166 108 0 3 chr9 63247341 63247648 -54614979 + AluSx SINE Alu 5 310 -2 3820 172 24 61 chr9 63247648 63248235 -54614392 + L1MB7 LINE L1 5490 6041 -143 2222 97 0 16 chr9 63248235 63248546 -54614081 + AluSx SINE Alu 1 306 -6 3820 172 24 61 chr9 63248546 63248666 -54613961 + L1MB7 LINE L1 6041 6164 -20 707 195 169 0 chr9 63248673 63248868 -54613759 - MER33 DNA MER1_type -76 248 21 187 169 0 51 chr9 63248902 63248961 -54613666 + GA-rich Low_complexity Low_complexity 4 59 0 2308 77 16 13 chr9 63249222 63249534 -54613093 + AluSp SINE Alu 1 313 0 231 294 84 8 chr9 63249579 63249698 -54612929 + L1MC5 LINE L1 7619 7746 -215 877 247 11 5 chr9 63250156 63250346 -54612281 + MLT1A2 LTR MaLR 184 374 0 419 247 38 51 chr9 63250383 63250541 -54612086 - L2 LINE L2 0 3313 3158 445 199 194 59 chr9 63250688 63250827 -54611800 - MIR SINE MIR 0 262 90 2200 107 0 0 chr9 63250827 63251127 -54611500 + AluSg1 SINE Alu 1 300 -9 445 199 194 59 chr9 63251127 63251173 -54611454 - MIR SINE MIR -172 90 52 207 100 0 0 chr9 63251421 63251451 -54611176 + (TGGA)n Simple_repeat Simple_repeat 1 30 0 2375 200 18 16 chr9 63251844 63252344 -54610283 - MLT1D LTR MaLR -4 501 1 1283 275 97 31 chr9 63252357 63252801 -54609826 + MLT1J LTR MaLR 37 509 -2 2201 105 111 20 chr9 63253936 63254280 -54608347 + THE1C LTR MaLR 1 375 0 2533 68 0 0 chr9 63254931 63255240 -54607387 - AluY SINE Alu -2 309 1 487 218 109 9 chr9 63255302 63255412 -54607215 - L2 LINE L2 0 3313 3193 1944 115 80 0 chr9 63255684 63255971 -54606656 + AluSx SINE Alu 3 312 0 279 0 0 0 chr9 63256941 63256972 -54605655 + (TA)n Simple_repeat Simple_repeat 2 32 0 1848 119 29 58 chr9 63256972 63257277 -54605350 - AluSx SINE Alu -16 296 1 561 156 21 0 chr9 63257289 63257385 -54605242 + MER110A LTR ERV1 79 176 -292 1629 112 14 0 chr9 63257526 63257749 -54604878 - AluSg/x SINE Alu -13 297 72 1993 113 0 10 chr9 63357751 63358044 -54504583 - AluSq SINE Alu -23 290 1 1268 211 7 24 chr9 63358951 63359245 -54503382 + AluJo SINE Alu 1 289 -23 253 258 183 43 chr9 63359405 63359591 -54503036 + MLT1K LTR MaLR 210 421 -167 220 106 0 43 chr9 63360229 63360276 -54502351 + (TA)n Simple_repeat Simple_repeat 1 45 0 681 270 136 39 chr9 63362838 63363227 -54499400 + L1MC4 LINE L1 7527 7953 -89 1936 107 71 0 chr9 63363249 63363530 -54499097 + AluSx SINE Alu 1 301 -11 30 0 0 0 chr9 63363530 63363560 -54499067 + AT_rich Low_complexity Low_complexity 1 30 0 249 242 0 16 chr9 63363566 63363628 -54498999 + L1MC4 LINE L1 7976 8036 -6 327 237 148 30 chr9 63364132 63364267 -54498360 + L1MC4a LINE L1 7504 7654 -154 744 178 31 0 chr9 63365880 63366009 -54496618 - FLAM_A SINE Alu 0 133 1 186 167 0 0 chr9 63366221 63366257 -54496370 + CT-rich Low_complexity Low_complexity 3 38 0 1000 97 0 0 chr9 63366699 63366833 -54495794 + AluSg/x SINE Alu 157 290 -22 637 142 32 52 chr9 63366856 63367011 -54495616 + L1MB3 LINE L1 6032 6183 0 21 71 0 0 chr9 63367163 63367205 -54495422 + AT_rich Low_complexity Low_complexity 1 42 0 681 243 19 14 chr9 63368277 63368667 -54493960 + (TG)n Simple_repeat Simple_repeat 1 391 0 361 319 98 20 chr9 63369175 63369429 -54493198 - L1ME4a LINE L1 -187 5934 5661 937 199 126 44 chr9 63369551 63369939 -54492688 - MER69 DNA AcHobo -187 2339 1920 182 225 125 62 chr9 63370186 63370266 -54492361 - L3 LINE CR1 -1014 563 479 2255 81 0 26 chr9 63370421 63370728 -54491899 - AluSc SINE Alu -10 299 1 225 0 0 0 chr9 63370731 63370756 -54491871 + (T)n Simple_repeat Simple_repeat 1 25 0 317 246 16 32 chr9 63370935 63371013 -54491614 + GA-rich Low_complexity Low_complexity 2 79 -46 2142 104 10 0 chr9 63371013 63371321 -54491306 + AluSx SINE Alu 1 311 -1 317 246 16 32 chr9 63371321 63371368 -54491259 + GA-rich Low_complexity Low_complexity 79 125 0 905 173 63 0 chr9 63372337 63372528 -54490099 + L1MB3 LINE L1 5981 6183 0 595 261 125 11 chr9 63374504 63374688 -54487939 + MIR SINE MIR 34 238 -24 308 365 93 14 chr9 63375809 63376023 -54486604 - MIR SINE MIR -29 233 3 376 168 20 10 chr9 63376329 63376430 -54486197 + CT-rich Low_complexity Low_complexity 4 105 0 25 51 0 0 chr9 63378736 63378775 -54483852 + AT_rich Low_complexity Low_complexity 1 39 0 2472 146 14 36 chr9 63378776 63378966 -54483661 + MSTC LTR MaLR 1 194 -234 2243 91 3 16 chr9 63378966 63379275 -54483352 - AluSx SINE Alu -5 307 3 2472 146 14 36 chr9 63379275 63379522 -54483105 + MSTC LTR MaLR 194 428 0 2160 106 0 0 chr9 63379598 63379891 -54482736 + AluSg SINE Alu 1 293 -17 1008 202 75 0 chr9 63379910 63380138 -54482489 + L1MB3 LINE L1 5938 6182 -1 1968 91 14 0 chr9 63381965 63382282 -54480345 + AluSx SINE Alu 6 326 0 21 0 0 0 chr9 63382683 63382704 -54479923 + AT_rich Low_complexity Low_complexity 1 21 0 1342 167 94 18 chr9 63384103 63384379 -54478248 + AluJb SINE Alu 1 297 -15 318 317 120 53 chr9 63385139 63385423 -54477204 - L1ME LINE L1 -297 5824 5522 22 0 0 0 chr9 63385940 63385962 -54476665 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr9 63386212 63386234 -54476393 + AT_rich Low_complexity Low_complexity 1 22 0 338 256 81 19 chr9 63386338 63386498 -54476129 - L1ME LINE L1 -1099 5047 4878 1900 158 0 7 chr9 63386880 63387190 -54475437 + AluJo SINE Alu 1 308 -4 542 284 23 58 chr9 63388085 63388342 -54474285 + MER112 DNA MER1_type 9 256 -4 253 305 156 0 chr9 63388380 63388508 -54474119 + HAL1 LINE L1 2360 2507 0 952 211 40 4 chr9 63388513 63388740 -54473887 + MER46A DNA MER2_type 2 236 0 1799 165 3 3 chr9 63389701 63390010 -54472617 - AluJb SINE Alu -3 309 1 1981 162 92 37 chr9 63390808 63390951 -54471676 + MSTB2 LTR MaLR 1 135 -322 189 0 0 0 chr9 63390951 63390972 -54471655 + (TGAG)n Simple_repeat Simple_repeat 2 22 0 1981 162 92 37 chr9 63390972 63391261 -54471366 + MSTB2 LTR MaLR 135 457 0 14361 184 35 20 chr9 63392664 63398342 -54464285 + L1MA4A LINE L1 269 6034 -814 5193 140 11 8 chr9 63398343 63399596 -54463031 + L1PA16 LINE L1 4751 6156 -10 643 112 10 0 chr9 63399596 63399690 -54462937 + L1PA16 LINE L1 6065 6163 -3 6242 117 6 21 chr9 63399697 63400679 -54461948 + L1MA4A LINE L1 6020 6986 -19 319 297 0 0 chr9 63400681 63400755 -54461872 - L2 LINE L2 -4 3309 3236 611 264 48 22 chr9 63401593 63401965 -54460662 - MER113 DNA MER1_type? -44 477 71 2341 91 0 0 chr9 63404301 63404609 -54458018 + AluSg SINE Alu 1 308 -2 474 167 8 8 chr9 63404609 63404729 -54457898 - Tigger3(Golem) DNA MER2_type -464 2565 2446 194 297 194 42 chr9 63404822 63404987 -54457640 + MIR SINE MIR 64 253 -9 2516 74 3 0 chr9 63406385 63406684 -54455943 - AluSp SINE Alu -12 301 2 1053 221 4 21 chr9 63406714 63406954 -54455673 - L1MB5 LINE L1 -1 6173 5938 282 56 0 0 chr9 63407008 63407044 -54455583 + (TG)n Simple_repeat Simple_repeat 1 36 0 2301 77 0 3 chr9 63407280 63407594 -54455033 + AluY SINE Alu 4 316 0 186 264 215 16 chr9 63407966 63408087 -54454540 - L2 LINE L2 -1 3271 3127 1254 312 79 17 chr9 63408795 63409494 -54453133 + MER20B DNA MER1_type 7 748 -35 428 223 130 6 chr9 63410605 63410766 -54451861 - MIR3 SINE MIR -31 177 34 432 0 0 0 chr9 63411786 63411834 -54450793 + (TG)n Simple_repeat Simple_repeat 2 49 0 251 303 118 35 chr9 63412203 63412457 -54450170 + L2 LINE L2 2863 3137 -176 513 153 219 7 chr9 63412484 63412621 -54450006 - MER58A DNA MER1_type 0 167 2 290 245 59 59 chr9 63412656 63412758 -54449869 + L2 LINE L2 3212 3313 0 2264 99 0 50 chr9 63413142 63413465 -54449162 - AluSx SINE Alu -5 307 1 377 231 124 16 chr9 63413847 63413968 -54448659 + MER63 DNA MER1_type 22 781 -281 312 203 150 41 chr9 63414443 63414638 -54447989 + MER20B DNA MER1_type 1 219 0 676 303 43 13 chr9 63415542 63415773 -54446854 - MIR SINE MIR -22 240 3 1551 192 3 44 chr9 63415868 63416185 -54446442 + AluJo SINE Alu 1 304 -8 41 72 0 0 chr9 63416249 63416332 -54446295 + AT_rich Low_complexity Low_complexity 1 83 0 24 53 0 0 chr9 63418151 63418189 -54444438 + AT_rich Low_complexity Low_complexity 1 38 0 305 98 11 152 chr9 63418419 63418511 -54444116 - L1ME LINE L1 -361 5760 5682 198 364 58 45 chr9 63419726 63419880 -54442747 - MIR SINE MIR -1 261 106 21 71 0 0 chr9 63419936 63419978 -54442649 + AT_rich Low_complexity Low_complexity 1 42 0 854 199 73 29 chr9 63420130 63420336 -54442291 - MER20 DNA MER1_type -4 215 1 352 269 195 7 chr9 63420572 63420721 -54441906 - MER5B DNA MER1_type -1 177 1 2396 117 0 0 chr9 63420908 63421216 -54441411 + AluSx SINE Alu 1 308 -4 23 0 0 0 chr9 63421217 63421240 -54441387 + AT_rich Low_complexity Low_complexity 1 23 0 407 301 101 16 chr9 63421324 63421558 -54441069 + MIR SINE MIR 10 262 0 1582 251 64 29 chr9 63422360 63423009 -54439618 - L2 LINE L2 -5 3308 2623 369 291 75 8 chr9 63424294 63424428 -54438199 + L1ME3A LINE L1 6021 6163 -7 1283 196 43 0 chr9 63424828 63425108 -54437519 + L1PB4 LINE L1 4119 4410 -1736 4399 175 15 35 chr9 63425215 63426638 -54435989 + L1PB4 LINE L1 4414 5799 -357 2361 86 20 0 chr9 63426638 63426939 -54435688 + AluSc SINE Alu 3 309 0 4399 175 15 35 chr9 63426939 63427289 -54435338 + L1PB4 LINE L1 5799 6155 -1 369 139 174 0 chr9 63427292 63427407 -54435220 + Charlie5 DNA MER1_type 2408 2542 -70 906 218 42 5 chr9 63428631 63428847 -54433780 - MER58A DNA MER1_type 0 224 1 2190 234 50 11 chr9 63430163 63430719 -54431908 + MER119 DNA MER1_type 5 582 -1 243 290 63 83 chr9 63430747 63431109 -54431518 - L1ME4a LINE L1 -5 6116 5762 2214 121 0 9 chr9 63433778 63434093 -54428534 + AluSx SINE Alu 1 312 0 228 67 0 0 chr9 63434245 63434275 -54428352 + (CA)n Simple_repeat Simple_repeat 2 31 0 1068 218 14 5 chr9 63436454 63436670 -54425957 - MER20 DNA MER1_type -1 218 1 916 264 14 5 chr9 63438102 63438322 -54424305 + MIR SINE MIR 14 235 -27 316 300 36 36 chr9 63439072 63439182 -54423445 - MER91B DNA MER1_type -4 186 77 494 241 95 9 chr9 63439195 63439311 -54423316 - MER91B DNA MER1_type -60 130 5 667 176 0 15 chr9 63440229 63440360 -54422267 + L1MD3 LINE L1 7857 7985 -10 200 182 0 18 chr9 63443574 63443629 -54418998 + (TG)n Simple_repeat Simple_repeat 2 55 0 27 0 0 0 chr9 63444004 63444031 -54418596 + AT_rich Low_complexity Low_complexity 1 27 0 481 233 38 25 chr9 63447506 63447665 -54414962 - MLT1G3 LTR MaLR -191 339 179 301 333 124 17 chr9 63447873 63448050 -54414577 - L2 LINE L2 0 3272 3077 2148 217 45 50 chr9 63448898 63449415 -54413212 + L1MCa LINE L1 1 516 -5910 1945 119 0 116 chr9 63449415 63449768 -54412859 - AluSx SINE Alu 0 312 1 2148 217 45 50 chr9 63449768 63449868 -54412759 + L1MCa LINE L1 516 615 -5811 1895 224 26 11 chr9 63449872 63450337 -54412290 + L1MCa LINE L1 575 1046 -5380 2463 54 17 3 chr9 63450341 63450637 -54411990 + AluY SINE Alu 1 300 -11 1596 114 103 20 chr9 63450796 63451192 -54411435 + SVA Other Other 438 866 -520 7094 55 6 62 chr9 63451215 63452219 -54410408 + SVA Other Other 439 1386 0 185 253 133 48 chr9 63452727 63452810 -54409817 - L2 LINE L2 -492 2822 2733 784 140 98 147 chr9 63453379 63453644 -54408983 - L1MA8 LINE L1 0 6291 6040 397 279 195 52 chr9 63453645 63453932 -54408695 - L1ME LINE L1 -306 5815 5488 957 245 59 91 chr9 63454875 63454972 -54407655 - MLT2C2 LTR ERVL 0 464 365 2354 94 3 0 chr9 63454972 63455271 -54407356 + AluY SINE Alu 1 300 -11 957 245 59 91 chr9 63455271 63455647 -54406980 - MLT2C2 LTR ERVL -99 365 6 1504 183 65 0 chr9 63455655 63455978 -54406649 - ERVL-C2 LTR ERVL -5 5759 5416 1072 250 149 35 chr9 63456056 63456404 -54406223 + MLT1F1 LTR MaLR 75 462 -105 273 250 0 0 chr9 63456954 63457014 -54405613 - L3 LINE CR1 -872 705 646 1673 11 0 0 chr9 63458120 63458305 -54404322 + L1PA3 LINE L1 5966 6150 -5 288 53 0 0 chr9 63458312 63458350 -54404277 + (TAAAA)n Simple_repeat Simple_repeat 3 40 0 2298 115 0 0 chr9 63459455 63459805 -54402822 + AluSp SINE Alu 1 313 0 1315 242 10 3 chr9 63460496 63460794 -54401833 + L1MB2 LINE L1 5783 6082 -89 1065 253 63 34 chr9 63461064 63461444 -54401183 - MLT1E2 LTR MaLR -232 394 4 1967 107 14 4 chr9 63461456 63461737 -54400890 - MER51A LTR ERV1 -61 573 290 248 146 0 0 chr9 63461736 63461777 -54400850 + MER51A LTR ERV1 258 298 -336 * 1107 122 0 0 chr9 63461777 63461933 -54400694 + AluSg/x SINE Alu 150 305 -5 1575 183 39 7 chr9 63461934 63462218 -54400409 + AluJb SINE Alu 1 293 -19 2160 143 42 36 chr9 63462510 63462895 -54399732 - MER61D LTR ERV1 -1 500 114 1928 133 34 7 chr9 63463092 63463408 -54399219 - AluSq SINE Alu 0 313 1 1380 181 40 40 chr9 63463723 63464055 -54398572 - L1MA8 LINE L1 -237 6054 5731 254 202 42 79 chr9 63464617 63464768 -54397859 - MER20 DNA MER1_type -122 97 1 541 204 124 15 chr9 63465263 63465400 -54397227 - MER63A DNA MER1_type 0 210 59 3903 117 8 34 chr9 63465570 63465793 -54396834 + LTR43 LTR ERV1 1 228 -374 2115 143 0 6 chr9 63465793 63466107 -54396520 + AluSx SINE Alu 1 312 0 3903 117 8 34 chr9 63466107 63466501 -54396126 + LTR43 LTR ERV1 228 602 0 271 311 10 19 chr9 63467133 63467236 -54395391 - L2 LINE L2 0 3313 3212 506 165 157 9 chr9 63467301 63467416 -54395211 + MER58A DNA MER1_type 36 167 0 238 239 123 39 chr9 63467859 63467989 -54394638 - L2 LINE L2 -596 2718 2578 337 309 83 11 chr9 63468308 63468489 -54394138 + Charlie8 DNA MER1_type 90 283 -2134 247 161 18 36 chr9 63471190 63471246 -54391381 + GA-rich Low_complexity Low_complexity 2 56 0 231 151 38 19 chr9 63472387 63472440 -54390187 - L1MC4a LINE L1 -339 7469 7416 327 143 0 0 chr9 63472539 63472588 -54390039 + (GGGGA)n Simple_repeat Simple_repeat 4 52 0 1141 141 10 0 chr9 63473557 63473755 -54388872 + L1MB3 LINE L1 5981 6180 -3 2140 108 4 0 chr9 63473826 63474137 -54388490 + AluSp SINE Alu 6 317 0 333 350 28 6 chr9 63476082 63476262 -54386365 - MIR SINE MIR -66 196 13 200 218 92 35 chr9 63476283 63476370 -54386257 + L2 LINE L2 3222 3313 0 2367 109 3 0 chr9 63478507 63478818 -54383809 - AluSx SINE Alu 0 312 1 198 71 0 0 chr9 63479078 63479106 -54383521 + (TC)n Simple_repeat Simple_repeat 2 29 0 188 262 16 33 chr9 63479687 63479748 -54382879 - MIR SINE MIR -110 152 93 2503 195 18 2 chr9 63480262 63480764 -54381863 - L1MA8 LINE L1 -239 6052 5543 2301 73 3 3 chr9 63481102 63481389 -54381238 + AluSc SINE Alu 1 287 -22 407 284 50 14 chr9 63481415 63481556 -54381071 - MIR SINE MIR -56 206 61 1944 108 0 4 chr9 63482143 63482401 -54380226 + AluSq SINE Alu 28 284 -29 243 270 14 0 chr9 63483883 63483957 -54378670 - MER116 DNA Mariner 0 80 6 5171 161 17 41 chr9 63485322 63486300 -54376327 + LTR5 LTR ERVK 1 955 -14 220 282 35 56 chr9 63486425 63486567 -54376060 - MIR SINE MIR -50 212 74 713 248 0 0 chr9 63487190 63487335 -54375292 + FRAM SINE Alu 8 152 -24 624 174 0 0 chr9 63488070 63488168 -54374459 - Tigger3b DNA MER2_type -32 1200 1103 208 263 105 11 chr9 63488173 63488268 -54374359 + L2 LINE L2 3169 3272 0 2219 202 38 48 chr9 63489355 63489784 -54372843 + L1MB7 LINE L1 5592 6016 -168 2413 158 38 19 chr9 63489784 63490203 -54372424 + MSTC LTR MaLR 2 428 0 2219 202 38 48 chr9 63490203 63490355 -54372272 + L1MB7 LINE L1 6016 6168 -16 4032 171 26 24 chr9 63490368 63491130 -54371497 + Tigger3b DNA MER2_type 1 767 -2261 2046 142 0 10 chr9 63491130 63491426 -54371201 - AluSx SINE Alu -19 293 1 4032 171 26 24 chr9 63491426 63491463 -54371164 + Tigger3b DNA MER2_type 767 802 -429 3417 106 2 6 chr9 63491475 63491949 -54370678 + MER9 LTR ERVK 40 511 0 2414 166 11 40 chr9 63491949 63492400 -54370227 + Tigger3b DNA MER2_type 794 1231 0 319 200 19 95 chr9 63492650 63492711 -54369916 - MIR SINE MIR -37 225 174 912 215 16 0 chr9 63492711 63492897 -54369730 - MER5A DNA MER1_type 0 189 1 319 200 19 95 chr9 63492897 63492940 -54369687 - MIR SINE MIR -88 174 129 2302 124 21 12 chr9 63493024 63493355 -54369272 + MER1B DNA MER1_type 6 339 0 930 239 74 41 chr9 63493803 63494193 -54368434 - LTR56 LTR ERV1 -23 422 20 518 261 125 11 chr9 63494464 63494648 -54367979 + MIR SINE MIR 34 238 -24 2205 122 0 0 chr9 63496077 63496386 -54366241 + AluSx SINE Alu 1 309 0 2250 102 0 0 chr9 63496429 63496804 -54365823 + AluSq SINE Alu 1 375 0 23 0 0 0 chr9 63498901 63498924 -54363703 + AT_rich Low_complexity Low_complexity 1 23 0 1582 122 5 0 chr9 63500704 63500926 -54361701 + AluSq SINE Alu 1 223 -90 1203 216 28 0 chr9 63501622 63501877 -54360750 + L1PA16 LINE L1 5903 6164 -2 5611 134 15 0 chr9 63501911 63502799 -54359828 + L1PA16 LINE L1 5231 6131 -35 281 293 36 36 chr9 63502910 63503050 -54359577 - L1MC/D LINE L1 -2048 5760 5621 207 246 29 0 chr9 63503201 63503270 -54359357 + (TTA)n Simple_repeat Simple_repeat 2 72 0 291 250 0 60 chr9 63503451 63503551 -54359076 + MIR SINE MIR 82 175 -87 381 178 14 0 chr9 63505003 63505076 -54357551 + MER116 DNA Mariner 7 80 0 1411 183 45 58 chr9 63506335 63506646 -54355981 + AluJo SINE Alu 1 307 -5 265 235 35 12 chr9 63506890 63506975 -54355652 - L1MC4a LINE L1 -1859 5949 5863 506 271 0 0 chr9 63507423 63507545 -54355082 + MIR SINE MIR 74 195 -67 450 285 51 56 chr9 63507644 63507858 -54354769 - MLT1G1 LTR MaLR -282 300 36 3633 171 15 7 chr9 63507859 63508993 -54353634 + L1MA8 LINE L1 4851 5993 -298 346 227 83 142 chr9 63509116 63509535 -54353092 - MER34 LTR ERV1 -100 485 23 210 122 49 0 chr9 63509877 63509918 -54352709 + T-rich Low_complexity Low_complexity 2 44 0 270 250 19 9 chr9 63510313 63510421 -54352206 + MLT1K LTR MaLR 365 473 -115 6678 121 16 30 chr9 63510683 63511211 -54351416 + L1MA3 LINE L1 4837 5371 -934 2094 116 0 27 chr9 63511211 63511539 -54351088 + AluSx SINE Alu 1 320 0 6678 121 16 30 chr9 63511539 63512485 -54350142 + L1MA3 LINE L1 5371 6305 0 264 191 0 0 chr9 63512868 63512910 -54349717 + Alu SINE Alu 1 42 -258 569 168 0 21 chr9 63512910 63513005 -54349622 + AluJb SINE Alu 202 294 -18 532 75 12 12 chr9 63513112 63513192 -54349435 - MADE1 DNA Mariner 0 80 1 7181 52 4 0 chr9 63513298 63514305 -54348322 - L1PA5 LINE L1 0 6154 5147 4982 91 15 4 chr9 63514796 63515480 -54347147 - LTR8 LTR ERV1 0 691 1 200 321 18 9 chr9 63516619 63516728 -54345899 + T-rich Low_complexity Low_complexity 2 111 0 576 224 14 0 chr9 63517278 63517421 -54345206 - L1ME2 LINE L1 -19 6145 6001 3181 162 35 19 chr9 63517534 63518170 -54344457 - L1MC1 LINE L1 -6 6327 5682 2772 123 9 5 chr9 63518170 63518608 -54344019 + MER83 LTR ERV1 2 441 -7 2045 175 24 14 chr9 63518610 63519032 -54343595 - L1MC1 LINE L1 -642 5691 5266 2254 116 0 16 chr9 63519032 63519350 -54343277 - AluSq SINE Alu 0 313 1 6577 85 3 0 chr9 63519375 63520478 -54342149 - L1PA10 LINE L1 -4 6164 5053 1951 72 0 16 chr9 63520483 63520756 -54341871 - AluY SINE Alu 0 311 50 262 161 62 12 chr9 63520787 63520868 -54341759 - AluS SINE Alu -218 85 1 2178 108 11 0 chr9 63521125 63521411 -54341216 - AluSq SINE Alu -23 290 2 25 31 0 0 chr9 63521537 63521569 -54341058 + AT_rich Low_complexity Low_complexity 1 32 0 418 127 0 0 chr9 63621581 63621644 -54240983 + MER41B LTR ERV1 573 635 0 508 285 38 63 chr9 63622723 63623085 -54239542 - MLT1H LTR MaLR -25 384 49 552 163 0 0 chr9 63623846 63623975 -54238652 + GA-rich Low_complexity Low_complexity 1 129 0 1080 168 10 0 chr9 63623986 63624182 -54238445 + L1PBa LINE L1 3 200 -6663 12854 176 53 88 chr9 63624184 63625765 -54236862 + L1PBa LINE L1 636 2271 -4591 2886 16 0 3 chr9 63625765 63626079 -54236548 - AluYb8 SINE Alu -5 313 1 12854 176 53 88 chr9 63626079 63626640 -54235987 + L1PBa LINE L1 2271 2850 -4012 2145 118 0 16 chr9 63626640 63626944 -54235683 + AluSg SINE Alu 5 303 -7 12854 176 53 88 chr9 63626944 63627960 -54234667 + L1PBa LINE L1 2850 3820 -3042 1238 89 0 0 chr9 63627960 63628117 -54234510 + AluSg/x SINE Alu 156 312 0 12854 176 53 88 chr9 63628117 63628912 -54233715 + L1PBa LINE L1 3820 4641 -2221 2205 223 23 4 chr9 63628900 63629457 -54233170 + L1 LINE L1 5479 6046 -816 * 2290 150 27 74 chr9 63629474 63629850 -54232777 + MSTB LTR MaLR 1 354 -72 2063 129 0 0 chr9 63629850 63630130 -54232497 + AluSg SINE Alu 1 280 -30 2290 150 27 74 chr9 63630130 63630200 -54232427 + MSTB LTR MaLR 354 426 0 8893 171 43 6 chr9 63630200 63631792 -54230835 + MSTB-int LTR MaLR 1 1651 0 2460 147 48 22 chr9 63631792 63632207 -54230420 + MSTB LTR MaLR 1 426 0 252 111 0 0 chr9 63632687 63632732 -54229895 + (GGAA)n Simple_repeat Simple_repeat 3 47 0 2264 116 0 0 chr9 63632758 63633051 -54229576 + AluSx SINE Alu 1 293 -19 2036 113 3 40 chr9 63633301 63633603 -54229024 - AluSx SINE Alu -21 291 1 1137 155 0 0 chr9 63634340 63634508 -54228119 - AluSg/x SINE Alu -8 304 137 1112 233 36 70 chr9 63634763 63635150 -54227477 + MLT2D LTR ERVL 1 374 -40 417 260 136 17 chr9 63635198 63635433 -54227194 - L2 LINE L2 -898 2416 2154 2657 152 17 2 chr9 63635701 63636121 -54226506 + MSTB LTR MaLR 1 426 0 433 228 79 0 chr9 63636234 63636348 -54226279 + MER94 DNA DNA 1 123 -11 2156 139 0 0 chr9 63636448 63636751 -54225876 + AluSq SINE Alu 1 303 -10 24 53 0 0 chr9 63637804 63637842 -54224785 + AT_rich Low_complexity Low_complexity 1 38 0 651 202 8 0 chr9 63637864 63637983 -54224644 - FLAM_C SINE Alu -9 124 5 636 102 0 0 chr9 63637983 63638071 -54224556 + MSTD LTR MaLR 309 396 0 1081 230 32 68 chr9 63638071 63638380 -54224247 - L1MC3 LINE L1 -987 6798 6501 237 305 61 76 chr9 63638491 63638622 -54224005 - MIR3 SINE MIR -22 186 58 2043 129 24 3 chr9 63638886 63639199 -54223428 + AluSx SINE Alu 4 502 -39 975 96 22 11 chr9 63639199 63639377 -54223250 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2043 129 24 3 chr9 63639377 63639418 -54223209 + AluSx SINE Alu 502 541 0 23 78 0 0 chr9 63639650 63639701 -54222926 + AT_rich Low_complexity Low_complexity 1 51 0 318 189 14 27 chr9 63639990 63640064 -54222563 - MLT1K LTR MaLR -4 584 512 4016 97 43 22 chr9 63640078 63640565 -54222062 + MER39B LTR ERV1 1 497 -125 2353 84 0 29 chr9 63640565 63640874 -54221753 - AluSq SINE Alu -13 300 1 4016 97 43 22 chr9 63640874 63641003 -54221624 + MER39B LTR ERV1 497 622 0 1893 142 6 15 chr9 63641203 63641533 -54221094 - L1M2 LINE L1 -647 5644 5318 15569 41 0 3 chr9 63641533 63643425 -54219202 + L1P LINE L1 2811 4696 -1450 231 191 85 0 chr9 63643412 63643459 -54219168 - L1M2 LINE L1 -996 5337 5287 * 22 0 0 0 chr9 63643748 63643770 -54218857 + AT_rich Low_complexity Low_complexity 1 22 0 326 270 67 0 chr9 63644773 63644862 -54217765 - L2 LINE L2 -4 3309 3215 2436 92 0 0 chr9 63644916 63645219 -54217408 + AluSg SINE Alu 1 303 -7 22 35 0 0 chr9 63645574 63645603 -54217024 + AT_rich Low_complexity Low_complexity 1 29 0 2241 107 0 7 chr9 63646621 63646929 -54215698 - AluSg SINE Alu -4 306 1 952 211 60 22 chr9 63647152 63647384 -54215243 + MER21-int LTR ERV1 1397 1637 -2554 2087 119 14 0 chr9 63647559 63647844 -54214783 + AluSx SINE Alu 1 289 -23 526 267 81 0 chr9 63648490 63648651 -54213976 - MIR SINE MIR -11 251 78 2138 94 0 37 chr9 63648848 63649175 -54213452 + AluSq SINE Alu 2 313 0 609 245 53 100 chr9 63649201 63649320 -54213307 + L1MEc LINE L1 1679 1802 -4624 1979 117 57 0 chr9 63649320 63649601 -54213026 - AluY SINE Alu -14 297 1 609 245 53 100 chr9 63649601 63649747 -54212880 + L1MEc LINE L1 1802 1890 -4536 2302 109 6 3 chr9 63649747 63650058 -54212569 + AluSx SINE Alu 1 312 0 609 245 53 100 chr9 63650058 63650089 -54212538 + L1MEc LINE L1 1890 1921 -4505 2038 284 78 19 chr9 63650268 63650912 -54211715 + MER115 DNA AcHobo 11 692 -1 2299 110 0 0 chr9 63650941 63651231 -54211396 + AluSg SINE Alu 1 290 -20 219 36 0 0 chr9 63651247 63651275 -54211352 + (CA)n Simple_repeat Simple_repeat 1 28 0 1201 250 81 69 chr9 63651375 63651393 -54211234 + L1MEc LINE L1 2244 2260 -4166 1972 123 39 0 chr9 63651393 63651678 -54210949 + AluSp SINE Alu 1 296 -17 1201 250 81 69 chr9 63651678 63651915 -54210712 + L1MEc LINE L1 2260 2493 -3933 1941 149 3 26 chr9 63651915 63652217 -54210410 + AluJo SINE Alu 1 295 -17 1201 250 81 69 chr9 63652217 63652255 -54210372 + L1MEc LINE L1 2493 2529 -3897 2380 104 0 0 chr9 63652255 63652564 -54210063 + AluSg SINE Alu 1 309 -1 1201 250 81 69 chr9 63652564 63652987 -54209640 + L1MEc LINE L1 2529 2946 -3480 2160 98 4 0 chr9 63652987 63653261 -54209366 + AluSq SINE Alu 3 277 -36 225 0 0 0 chr9 63653264 63653289 -54209338 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1201 250 81 69 chr9 63653289 63653454 -54209173 + L1MEc LINE L1 2947 3113 -3313 775 189 189 34 chr9 63653606 63653844 -54208783 + L1ME3A LINE L1 5892 6166 -4 1891 123 3 68 chr9 63653881 63654207 -54208420 - AluSx SINE Alu -7 305 1 584 231 39 54 chr9 63654233 63654493 -54208134 + L1MC5 LINE L1 6960 7215 -746 1672 232 81 29 chr9 63654495 63655031 -54207596 - MLT1F1 LTR MaLR -2 565 10 2902 136 11 15 chr9 63655032 63655495 -54207132 + MER65C LTR ERV1 1 461 0 977 254 77 73 chr9 63655657 63656311 -54206316 + L1MC5 LINE L1 7261 7916 -45 1590 191 3 44 chr9 63656461 63656642 -54205985 - AluJb SINE Alu -10 302 138 2321 92 3 16 chr9 63656642 63656946 -54205681 - AluSc SINE Alu -9 300 1 1590 191 3 44 chr9 63656946 63657079 -54205548 - AluJb SINE Alu -174 138 1 399 281 112 17 chr9 63657087 63657265 -54205362 - L1ME3A LINE L1 0 6170 5976 2208 115 0 3 chr9 63657283 63657578 -54205049 - AluSx SINE Alu -10 302 9 370 302 67 42 chr9 63657759 63658234 -54204393 - L1MEc LINE L1 -768 1722 1236 391 258 73 81 chr9 63658235 63658483 -54204144 - L1MEc LINE L1 -5016 1103 858 2319 102 0 13 chr9 63659300 63659614 -54203013 - AluSq SINE Alu -3 310 1 338 120 0 0 chr9 63660644 63660694 -54201933 - AluS SINE Alu -218 85 36 1460 113 14 5 chr9 63660694 63660915 -54201712 + AluSg/x SINE Alu 83 305 -7 229 265 24 48 chr9 63661058 63661141 -54201486 + MLT1L LTR MaLR 210 290 -325 394 206 11 0 chr9 63661307 63661399 -54201228 + L1MA6 LINE L1 5959 6051 -249 750 205 0 0 chr9 63661400 63661522 -54201105 + FLAM_A SINE Alu 1 122 -11 2036 127 35 0 chr9 63661531 63661815 -54200812 + AluJb SINE Alu 1 294 -18 1249 161 63 0 chr9 63661839 63662093 -54200534 + L1MA6 LINE L1 6030 6299 -1 1965 78 7 50 chr9 63662106 63662387 -54200240 + AluY SINE Alu 33 301 -10 232 238 75 25 chr9 63662395 63662475 -54200152 + MLT1J LTR MaLR 389 472 -39 2197 87 0 78 chr9 63662737 63663211 -54199416 - AluSx SINE Alu 0 448 1 1281 167 0 9 chr9 63663749 63663959 -54198668 - AluJb SINE Alu -13 299 92 2140 112 0 3 chr9 63664178 63664492 -54198135 - AluSq SINE Alu 0 313 1 1078 196 50 9 chr9 63664559 63664742 -54197885 - AluJo SINE Alu 0 312 117 279 0 0 0 chr9 63664742 63664773 -54197854 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1078 196 50 9 chr9 63664773 63664809 -54197818 - AluJo SINE Alu -195 117 84 220 313 16 16 chr9 63665712 63665776 -54196851 + L3b LINE CR1 1512 1575 -8 2460 105 131 11 chr9 63667182 63667564 -54195063 - MSTA LTR MaLR 0 428 1 2293 113 3 0 chr9 63667718 63668027 -54194600 - AluSq SINE Alu -3 310 1 24 53 0 0 chr9 63668152 63668190 -54194437 + AT_rich Low_complexity Low_complexity 1 38 0 913 247 181 48 chr9 63668255 63668729 -54193898 + MLT1H1 LTR MaLR 10 546 -9 249 98 0 0 chr9 63668981 63669022 -54193605 + (CA)n Simple_repeat Simple_repeat 2 42 0 333 118 0 0 chr9 63669025 63669076 -54193551 + (TA)n Simple_repeat Simple_repeat 1 51 0 2257 123 0 0 chr9 63670151 63670459 -54192168 - AluSx SINE Alu -4 308 1 2053 136 0 3 chr9 63670843 63671144 -54191483 - AluSx SINE Alu -12 300 1 2175 111 0 0 chr9 63671230 63671518 -54191109 + AluSc SINE Alu 1 288 -21 2171 215 36 7 chr9 63671770 63672322 -54190305 + L1M4 LINE L1 4777 5336 -810 711 214 6 54 chr9 63672358 63672526 -54190101 + L1MCa LINE L1 102 261 -6165 * 7408 165 94 48 chr9 63672513 63672902 -54189725 + L1MCa LINE L1 788 1158 -5268 2260 79 45 0 chr9 63672902 63673193 -54189434 + AluSg SINE Alu 1 304 -6 7408 165 94 48 chr9 63673193 63673695 -54188932 + L1MCa LINE L1 1158 1635 -4791 2284 110 3 3 chr9 63673695 63674005 -54188622 + AluSg SINE Alu 1 310 0 7408 165 94 48 chr9 63674005 63674245 -54188382 + L1MCa LINE L1 1635 1862 -4564 1019 113 0 0 chr9 63674245 63674378 -54188249 + FLAM_C SINE Alu 1 133 0 7408 165 94 48 chr9 63674378 63674887 -54187740 + L1MCa LINE L1 1862 2346 -4080 790 141 33 25 chr9 63674887 63675008 -54187619 - FLAM_A SINE Alu -11 122 1 7408 165 94 48 chr9 63675008 63675223 -54187404 + L1MCa LINE L1 2346 2550 -3876 2025 103 0 21 chr9 63675223 63675504 -54187123 + AluSx SINE Alu 1 275 -37 7408 165 94 48 chr9 63675504 63675519 -54187108 + L1MCa LINE L1 2550 2563 -3863 182 62 31 0 chr9 63675519 63675551 -54187076 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 7408 165 94 48 chr9 63675551 63675932 -54186695 + L1MCa LINE L1 2563 3141 -3285 23 0 0 0 chr9 63676312 63676335 -54186292 + AT_rich Low_complexity Low_complexity 1 23 0 2100 101 11 3 chr9 63676411 63676698 -54185929 + AluSc SINE Alu 5 293 -16 357 174 124 58 chr9 63676716 63676837 -54185790 + L1ME4a LINE L1 5991 6119 -2 860 196 67 0 chr9 63677035 63677229 -54185398 + L1MB7 LINE L1 5977 6183 -1 674 289 15 34 chr9 63677477 63677743 -54184884 - MIR SINE MIR 0 262 2 2232 119 0 3 chr9 63677791 63678101 -54184526 - AluSx SINE Alu 0 312 4 2192 129 3 0 chr9 63678123 63678432 -54184195 - AluSg SINE Alu 0 310 1 757 224 31 31 chr9 63678862 63679054 -54183573 - LTR39 LTR ERV1 0 783 592 2022 139 3 0 chr9 63679058 63679352 -54183275 - AluSx SINE Alu -17 295 1 570 272 46 52 chr9 63679353 63679680 -54182947 - L2 LINE L2 -102 3211 2887 196 159 0 91 chr9 63679869 63679913 -54182714 - L2 LINE L2 -598 2716 2677 2342 90 0 0 chr9 63680117 63680405 -54182222 - AluSx SINE Alu -24 288 1 284 224 35 0 chr9 63680811 63680869 -54181758 + MER21B LTR ERV1 11 70 -793 1068 80 0 0 chr9 63680879 63681017 -54181610 - AluSp/q SINE Alu 0 313 176 580 249 48 29 chr9 63681231 63681440 -54181187 + HsTC2 DNA Tc2 32 244 -1654 982 166 184 0 chr9 63681445 63681662 -54180965 + MER33 DNA MER1_type 1 257 -67 783 143 9 0 chr9 63681676 63681788 -54180839 - FLAM_C SINE Alu -18 125 13 415 153 0 59 chr9 63681801 63681886 -54180741 + MER33 DNA MER1_type 284 363 0 442 154 44 96 chr9 63681943 63682079 -54180548 + HsTC2 DNA Tc2 1711 1839 -59 2263 110 0 0 chr9 63682363 63682653 -54179974 - AluSq SINE Alu -23 290 1 1781 187 56 1 chr9 63682676 63683113 -54179514 - L1MB2 LINE L1 0 6180 5688 1375 234 132 105 chr9 63684731 63684827 -54177800 - HAL1 LINE L1 -1347 1160 1068 1696 194 7 0 chr9 63684827 63685126 -54177501 + AluJb SINE Alu 1 301 -11 1375 234 132 105 chr9 63685126 63685551 -54177076 - HAL1 LINE L1 -1439 1068 656 2440 84 0 0 chr9 63685551 63685861 -54176766 - AluSx SINE Alu -2 310 1 421 190 0 0 chr9 63685863 63685942 -54176685 - L1PA16 LINE L1 -6 6160 6082 1375 234 132 105 chr9 63685942 63686534 -54176093 - HAL1 LINE L1 -1851 656 13 1802 185 80 113 chr9 63686947 63686976 -54175651 - LTR48B LTR ERV1 -1 643 615 2115 141 7 0 chr9 63686976 63687274 -54175353 - AluSx SINE Alu -12 300 1 1802 185 80 113 chr9 63687274 63687909 -54174718 - LTR48B LTR ERV1 -29 615 1 333 179 256 0 chr9 63688229 63688307 -54174320 - LTR48B LTR ERV1 -1 643 546 985 220 0 0 chr9 63688317 63688485 -54174142 - FAM SINE Alu -7 168 1 10829 172 67 63 chr9 63688509 63689342 -54173285 + LTR49-int LTR ERV1 1686 2515 -3816 252 0 0 0 chr9 63689342 63689370 -54173257 + (CA)n Simple_repeat Simple_repeat 2 29 0 10829 172 67 63 chr9 63689370 63689456 -54173171 + LTR49-int LTR ERV1 2515 2599 -3732 1888 151 7 0 chr9 63689456 63689760 -54172867 - AluSx SINE Alu 0 306 1 10829 172 67 63 chr9 63689760 63691021 -54171606 + LTR49-int LTR ERV1 2599 3854 -2477 784 238 0 24 chr9 63691021 63691185 -54171442 - FRAM SINE Alu -6 160 1 10829 172 67 63 chr9 63691185 63691236 -54171391 + LTR49-int LTR ERV1 3854 3903 -2428 2274 110 0 0 chr9 63691236 63691537 -54171090 + AluY SINE Alu 1 301 -10 10829 172 67 63 chr9 63691537 63692201 -54170426 + LTR49-int LTR ERV1 3903 4563 -1768 1973 145 6 25 chr9 63692201 63692519 -54170108 + AluSx SINE Alu 1 312 0 10829 172 67 63 chr9 63692519 63692692 -54169935 + LTR49-int LTR ERV1 4563 6328 -3 3862 125 24 8 chr9 63692694 63693280 -54169347 + LTR49 LTR ERV1 1 595 0 440 144 246 0 chr9 63694032 63694150 -54168477 + LTR23 LTR ERV1 1 147 -290 513 138 12 0 chr9 63694225 63694305 -54168322 + LTR23 LTR ERV1 161 241 -196 737 185 7 15 chr9 63694311 63694446 -54168181 + FLAM_A SINE Alu 7 140 -2 1211 113 26 10 chr9 63694468 63694663 -54167964 + LTR23 LTR ERV1 240 437 0 185 282 0 0 chr9 63695039 63695078 -54167549 + L2 LINE L2 3213 3251 -21 2335 95 3 0 chr9 63695488 63695794 -54166833 + AluY SINE Alu 1 307 -4 1018 145 0 127 chr9 63695851 63696072 -54166555 - 7SK RNA RNA 0 193 1 1083 191 54 47 chr9 63696159 63696457 -54166170 - L1MC2 LINE L1 0 6344 6045 812 148 16 0 chr9 63696458 63696586 -54166041 - AluJb SINE Alu -14 298 169 664 115 48 10 chr9 63697284 63697388 -54165239 - AluJb SINE Alu -120 192 85 1270 48 0 0 chr9 63697399 63697544 -54165083 - AluY SINE Alu -15 296 152 833 202 39 0 chr9 63697859 63698037 -54164590 - L1MB3 LINE L1 -11 6172 5988 556 111 0 0 chr9 63698038 63698110 -54164517 - L1M3 LINE L1 -427 5756 5685 519 279 85 0 chr9 63698188 63698288 -54164339 + MER5A DNA MER1_type 10 131 -58 2146 89 10 26 chr9 63698288 63698590 -54164037 - AluSx SINE Alu -15 297 1 519 279 85 0 chr9 63698590 63698654 -54163973 + MER5A DNA MER1_type 131 188 -1 1998 163 0 0 chr9 63698692 63698999 -54163628 - AluJb SINE Alu -5 307 1 222 270 0 32 chr9 63699705 63699768 -54162859 - MIR SINE MIR -170 92 32 1905 59 54 0 chr9 63700902 63701141 -54161486 - L1PA5 LINE L1 -8 6146 5895 268 282 271 11 chr9 63701264 63701452 -54161175 + MIR SINE MIR 2 238 -24 24 0 0 0 chr9 63702537 63702561 -54160066 + AT_rich Low_complexity Low_complexity 1 24 0 193 354 16 24 chr9 63702684 63702811 -54159816 + MIR3 SINE MIR 58 183 -25 1556 152 110 0 chr9 63704160 63704424 -54158203 - AluJb SINE Alu -19 293 1 1319 170 0 9 chr9 63704453 63704683 -54157944 + AluJb SINE Alu 85 312 0 24 32 0 0 chr9 63704784 63704815 -54157812 + AT_rich Low_complexity Low_complexity 1 31 0 42 0 0 0 chr9 63704991 63705033 -54157594 + AT_rich Low_complexity Low_complexity 1 42 0 1304 110 11 11 chr9 63705090 63705281 -54157346 + AluSg/x SINE Alu 112 302 -8 5644 134 66 76 chr9 63705282 63706129 -54156498 + Tigger3b DNA MER2_type 67 920 -2108 956 166 0 93 chr9 63706129 63706226 -54156401 - FAM SINE Alu -136 175 103 2209 98 3 7 chr9 63706226 63706521 -54156106 - AluSg SINE Alu -16 294 1 956 166 0 93 chr9 63706521 63706616 -54156011 - FAM SINE Alu -208 103 1 5644 134 66 76 chr9 63706616 63706632 -54155995 + Tigger3b DNA MER2_type 920 935 -2093 10130 28 1 0 chr9 63706632 63708537 -54154090 + L1PA3 LINE L1 4255 6159 0 5644 134 66 76 chr9 63708537 63708847 -54153780 + Tigger3b DNA MER2_type 935 1231 0 855 123 107 26 chr9 63708847 63708998 -54153629 - MER46A DNA MER2_type -75 161 -1 523 209 114 19 chr9 63709171 63709329 -54153298 + MIR SINE MIR 69 241 -21 768 183 8 8 chr9 63709645 63709771 -54152856 - FLAM_C SINE Alu -16 127 2 1786 204 46 0 chr9 63710092 63710421 -54152206 + MER2 DNA MER2_type 1 344 0 203 184 82 41 chr9 63710805 63710854 -54151773 + L2 LINE L2 3256 3306 -7 312 237 112 59 chr9 63710871 63711040 -54151587 + L1MC1 LINE L1 5726 5903 -1905 259 167 0 0 chr9 63711184 63711226 -54151401 - MER2 DNA MER2_type 0 345 304 * 393 218 77 0 chr9 63711224 63711302 -54151325 + MER20 DNA MER1_type 63 146 -73 457 234 72 42 chr9 63712456 63712623 -54150004 + MIR SINE MIR 59 230 -32 2970 118 103 12 chr9 63713358 63713841 -54148786 - MER1A DNA MER1_type 0 527 1 2132 98 0 83 chr9 63713989 63714325 -54148302 + AluSx SINE Alu 1 308 -4 203 242 32 0 chr9 63715749 63715811 -54146816 + (TA)n Simple_repeat Simple_repeat 1 64 0 1816 161 3 20 chr9 63715811 63716110 -54146517 + AluJo SINE Alu 1 294 -18 2094 118 0 38 chr9 63717732 63718047 -54144580 + AluSg1 SINE Alu 1 303 -6 1265 185 87 0 chr9 63718097 63718407 -54144220 + AluJo SINE Alu 1 333 0 760 166 22 0 chr9 63718919 63719058 -54143569 + L1MB5 LINE L1 6032 6173 -1 21 0 0 0 chr9 63719776 63719797 -54142830 + GC_rich Low_complexity Low_complexity 1 21 0 2366 77 3 3 chr9 63721162 63721462 -54141165 + AluSx SINE Alu 1 300 -12 217 111 56 0 chr9 63721476 63721530 -54141097 + GA-rich Low_complexity Low_complexity 4 60 0 1743 88 122 11 chr9 63721545 63721808 -54140819 + AluSg SINE Alu 1 292 -18 231 36 0 0 chr9 63721821 63721849 -54140778 + (GGGA)n Simple_repeat Simple_repeat 1 28 0 371 232 50 10 chr9 63721925 63722024 -54140603 + MIR SINE MIR 158 260 -2 1162 185 69 0 chr9 63722057 63722317 -54140310 + L1MC1 LINE L1 6055 6332 -1 197 331 169 12 chr9 63722969 63723129 -54139498 - MIR SINE MIR -50 212 28 2220 102 0 0 chr9 63723444 63723747 -54138880 - AluSx SINE Alu 0 303 1 392 231 90 32 chr9 63724403 63724559 -54138068 + HAL1b LINE L1 331 495 -853 243 157 57 14 chr9 63727172 63727242 -54135385 + L1M2 LINE L1 5366 5438 -862 668 197 44 11 chr9 63727497 63727649 -54134978 + MIR SINE MIR 106 262 0 1901 112 13 64 chr9 63728024 63728338 -54134289 + AluSx SINE Alu 1 298 -14 745 301 56 35 chr9 63728342 63728771 -54133856 + L1ME LINE L1 4962 5380 -782 2142 121 0 3 chr9 63728771 63729061 -54133566 + AluSq SINE Alu 21 309 -4 745 301 56 35 chr9 63729061 63729470 -54133157 + L1ME LINE L1 5380 5816 -346 787 178 6 47 chr9 63729500 63729669 -54132958 - FAM SINE Alu -12 163 2 1107 158 0 0 chr9 63729785 63729950 -54132677 + AluSg/x SINE Alu 137 301 -11 996 153 28 17 chr9 63730076 63730253 -54132374 + AluJo SINE Alu 120 298 -14 1637 156 44 7 chr9 63730634 63730904 -54131723 + AluJo SINE Alu 1 280 -32 1658 127 4 8 chr9 63731263 63731508 -54131119 - AluSx SINE Alu -68 244 1 757 186 21 123 chr9 63731508 63731744 -54130883 + Charlie2 DNA MER1_type 68 279 -2583 1223 181 80 147 chr9 63731866 63732203 -54130424 + Charlie2 DNA MER1_type 1973 2331 -531 1013 39 0 0 chr9 63732203 63732330 -54130297 - L1PA4 LINE L1 0 6155 6029 1223 181 80 147 chr9 63732330 63732940 -54129687 + Charlie2 DNA MER1_type 2331 2857 -5 883 279 71 0 chr9 63733592 63733818 -54128809 - MIR SINE MIR -13 249 8 320 310 30 0 chr9 63734067 63734167 -54128460 - MIR SINE MIR -74 188 86 600 201 128 7 chr9 63734729 63734878 -54127749 - MIR SINE MIR -22 240 74 748 197 0 0 chr9 63735008 63735130 -54127497 + FLAM_C SINE Alu 1 122 -21 556 262 77 89 chr9 63735172 63735818 -54126809 + L2 LINE L2 2673 3313 0 270 355 48 24 chr9 63735973 63736139 -54126488 + MER5B DNA MER1_type 4 173 -5 557 268 28 39 chr9 63737333 63737512 -54125115 + MIR SINE MIR 86 262 0 241 278 113 7 chr9 63738166 63738317 -54124310 - L1ME4a LINE L1 -1 6120 5954 813 114 0 0 chr9 63739973 63740078 -54122549 - AluSq/x SINE Alu -206 107 3 2171 103 31 0 chr9 63740080 63740371 -54122256 - AluSq SINE Alu -13 300 1 21 0 0 0 chr9 63740400 63740421 -54122206 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 63740774 63740795 -54121832 + AT_rich Low_complexity Low_complexity 1 21 0 476 231 216 0 chr9 63741191 63741325 -54121302 + MER5A DNA MER1_type 27 189 0 1271 121 129 11 chr9 63741432 63741704 -54120923 + L1MA7 LINE L1 5986 6289 -2 22 0 0 0 chr9 63742276 63742298 -54120329 + AT_rich Low_complexity Low_complexity 1 22 0 648 159 35 9 chr9 63742482 63742595 -54120032 + FLAM_C SINE Alu 3 118 -15 1875 133 31 17 chr9 63743987 63744280 -54118347 + AluSx SINE Alu 1 297 -15 2206 94 7 13 chr9 63744450 63744749 -54117878 + AluSx SINE Alu 1 297 -15 29 60 0 0 chr9 63744987 63745037 -54117590 + AT_rich Low_complexity Low_complexity 1 50 0 2351 91 3 3 chr9 63745174 63745483 -54117144 + AluSq SINE Alu 1 309 -4 886 120 0 49 chr9 63747533 63747675 -54114952 - FLAM_C SINE Alu -2 141 7 7147 50 9 34 chr9 63749028 63750631 -54111996 + SVA Other Other 1 1408 0 488 272 57 20 chr9 63750942 63751101 -54111526 - MIR SINE MIR -30 178 25 372 296 63 21 chr9 63751513 63751655 -54110972 - MIR SINE MIR -109 153 6 234 217 83 17 chr9 63752586 63752646 -54109981 + L2 LINE L2 3189 3252 -20 674 214 36 36 chr9 63752807 63753031 -54109596 + L1MC4 LINE L1 7819 8042 0 243 0 0 0 chr9 63753104 63753131 -54109496 + (CAAAA)n Simple_repeat Simple_repeat 1 27 0 214 290 116 0 chr9 63753519 63753588 -54109039 + L2 LINE L2 3147 3223 -49 323 269 62 88 chr9 63753696 63753786 -54108841 - MIR3 SINE MIR -3 205 114 717 145 77 8 chr9 63753786 63753903 -54108724 + FLAM_C SINE Alu 1 125 -8 323 269 62 88 chr9 63753903 63754005 -54108622 - MIR3 SINE MIR -94 114 18 1092 181 72 114 chr9 63754265 63754624 -54108003 - MER2 DNA MER2_type 0 345 2 183 42 0 0 chr9 63755386 63755410 -54107217 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 811 192 29 17 chr9 63755728 63755900 -54106727 - MER58A DNA MER1_type -50 174 1 208 363 10 39 chr9 63755973 63756075 -54106552 - MIR3 SINE MIR -107 101 3 21 36 0 0 chr9 63757195 63757223 -54105404 + AT_rich Low_complexity Low_complexity 1 28 0 1074 181 0 0 chr9 63757293 63757470 -54105157 - AluJb SINE Alu -10 302 126 24 0 0 70 chr9 63757695 63757738 -54104889 + AT_rich Low_complexity Low_complexity 1 40 0 2232 107 0 13 chr9 63758535 63758834 -54103793 + AluSx SINE Alu 1 295 -17 1684 191 0 0 chr9 63758911 63759193 -54103434 + AluSx SINE Alu 1 282 -30 1378 196 0 13 chr9 63759321 63759556 -54103071 + AluJb SINE Alu 64 295 -17 198 171 0 0 chr9 63760635 63760676 -54101951 + CT-rich Low_complexity Low_complexity 2 42 0 282 324 59 0 chr9 63763593 63763669 -54098958 + MIR SINE MIR 49 119 -143 993 225 27 19 chr9 63763669 63763927 -54098700 + MIR SINE MIR 3 262 0 282 324 59 0 chr9 63763927 63763986 -54098641 + MIR SINE MIR 119 192 -70 409 301 22 33 chr9 63764073 63764256 -54098371 - MIR3 SINE MIR -2 206 26 829 250 121 0 chr9 63764801 63765025 -54097602 - MIR SINE MIR 0 262 12 182 327 0 0 chr9 63765159 63765211 -54097416 - MIR SINE MIR -60 148 97 21 36 0 0 chr9 63766098 63766126 -54096501 + AT_rich Low_complexity Low_complexity 1 28 0 742 247 51 78 chr9 63766196 63766451 -54096176 + MIR SINE MIR 2 249 -13 2416 97 3 0 chr9 63766702 63767012 -54095615 + AluSp SINE Alu 1 311 -2 630 258 199 44 chr9 63767118 63767516 -54095111 + L2 LINE L2 2688 3240 -73 2157 106 7 13 chr9 63767516 63767819 -54094808 - AluSx SINE Alu -11 301 1 630 258 199 44 chr9 63767819 63767906 -54094721 + L2 LINE L2 3240 3312 -1 426 275 100 4 chr9 63767955 63768195 -54094432 - L1M4 LINE L1 -893 5253 4991 * 452 236 31 25 chr9 63768167 63768328 -54094299 - L1ME LINE L1 -3033 3047 2886 1051 164 16 32 chr9 63768328 63768517 -54094110 - AluJo SINE Alu -6 306 121 242 217 0 0 chr9 63768517 63768577 -54094050 - L1ME LINE L1 -3200 2880 2821 567 141 30 20 chr9 63768627 63768726 -54093901 + FLAM_C SINE Alu 37 136 -7 1085 234 113 16 chr9 63768726 63769222 -54093405 - L1ME LINE L1 -3412 2668 2125 * 3830 107 27 11 chr9 63769221 63770168 -54092459 + L1PA14 LINE L1 5138 6161 0 271 252 37 0 chr9 63770175 63770282 -54092345 - L1ME LINE L1 -3949 2131 2021 737 292 51 38 chr9 63770292 63770740 -54091887 - L1ME LINE L1 -5208 862 409 * 3176 211 79 24 chr9 63770727 63772133 -54090494 - L1MCb LINE L1 -4851 1194 1 523 304 10 6 chr9 63772321 63772532 -54090095 - L1ME LINE L1 -5855 215 6 347 239 77 43 chr9 63772628 63772745 -54089882 - MIR SINE MIR -135 127 7 21 0 0 0 chr9 63772785 63772806 -54089821 + AT_rich Low_complexity Low_complexity 1 21 0 246 275 110 0 chr9 63773006 63773097 -54089530 + L2 LINE L2 3171 3271 -1 521 215 230 11 chr9 63774599 63774790 -54087837 - MER46C DNA MER2_type -8 330 98 820 104 0 0 chr9 63775668 63775774 -54086853 - AluSg/x SINE Alu -11 301 196 219 333 32 11 chr9 63775958 63776051 -54086576 - MER5A DNA MER1_type -7 182 88 197 292 258 0 chr9 63775993 63776082 -54086545 + MER5A DNA MER1_type 53 164 -25 * 1988 113 28 3 chr9 63776702 63776986 -54085641 + AluY SINE Alu 1 291 -20 736 334 75 40 chr9 63778817 63779471 -54083156 + L2 LINE L2 2591 3272 0 528 171 86 17 chr9 63779631 63779748 -54082879 - FLAM_A SINE Alu -8 125 1 970 179 30 0 chr9 63779861 63780029 -54082598 - FAM SINE Alu -2 173 1 27 29 0 0 chr9 63780623 63780657 -54081970 + AT_rich Low_complexity Low_complexity 1 34 0 22 0 0 0 chr9 63780944 63780966 -54081661 + AT_rich Low_complexity Low_complexity 1 22 0 252 259 71 24 chr9 63781613 63781698 -54080929 - MER5B DNA MER1_type -1 177 89 188 282 0 0 chr9 63781678 63781717 -54080910 - MER5B DNA MER1_type -133 45 7 * 956 193 12 6 chr9 63783336 63783507 -54079120 - FAM SINE Alu -3 172 1 28 29 0 0 chr9 63785116 63785151 -54077476 + AT_rich Low_complexity Low_complexity 1 35 0 442 264 143 0 chr9 63785744 63785884 -54076743 - MIR SINE MIR -25 237 78 1735 178 7 7 chr9 63785928 63786231 -54076396 + AluJo SINE Alu 1 303 -9 2527 84 0 0 chr9 63786455 63786763 -54075864 + AluSq SINE Alu 1 308 -5 2077 141 0 3 chr9 63787508 63787814 -54074813 + AluSg SINE Alu 1 305 -5 223 288 25 93 chr9 63788014 63788132 -54074495 + MIR SINE MIR 38 147 -115 1958 140 7 7 chr9 63788309 63788609 -54074018 + AluSx SINE Alu 1 300 -12 2259 117 0 0 chr9 63788612 63788910 -54073717 + AluSx SINE Alu 1 298 -14 21 0 0 0 chr9 63790802 63790823 -54071804 + AT_rich Low_complexity Low_complexity 1 21 0 211 205 24 48 chr9 63792004 63792087 -54070540 + (CCCCG)n Simple_repeat Simple_repeat 4 84 0 210 246 116 0 chr9 63792910 63792979 -54069648 - MIR SINE MIR 0 262 186 739 145 15 8 chr9 63792980 63793111 -54069516 - FLAM_C SINE Alu -11 132 1 250 213 93 0 chr9 63793111 63793186 -54069441 - MIR SINE MIR -66 196 115 582 133 0 0 chr9 63793548 63793638 -54068989 - AluSg/x SINE Alu -14 298 209 2205 119 0 0 chr9 63793688 63793982 -54068645 - AluSx SINE Alu -18 294 1 883 168 0 40 chr9 63793999 63794172 -54068455 + FRAM SINE Alu 1 166 -10 579 291 251 3 chr9 63795031 63795326 -54067301 + L2 LINE L2 2493 2860 -454 1969 199 174 58 chr9 63795328 63795988 -54066639 + MER21B LTR ERV1 2 738 -125 580 173 76 87 chr9 63795997 63796182 -54066445 - LTR48 LTR ERV1 0 787 605 1051 227 121 51 chr9 63796202 63796345 -54066282 - LTR48 LTR ERV1 -302 485 354 2047 144 0 7 chr9 63796345 63796643 -54065984 + AluJb SINE Alu 1 296 -16 1051 227 121 51 chr9 63796643 63796952 -54065675 - LTR48 LTR ERV1 -433 354 1 271 165 23 80 chr9 63796952 63797026 -54065601 + MER21A LTR ERV1 764 837 -26 469 336 114 0 chr9 63797034 63797245 -54065382 + L2 LINE L2 2825 3059 -254 2162 105 0 7 chr9 63797246 63797584 -54065043 - AluSx SINE Alu 0 336 1 2391 97 93 7 chr9 63797639 63798060 -54064567 + LTR24C LTR ERV1 1 457 -178 652 164 10 0 chr9 63798079 63798183 -54064444 + AluJo SINE Alu 1 105 -207 1521 162 61 31 chr9 63798196 63798523 -54064104 - LTR10A LTR ERV1 -61 548 212 303 230 126 0 chr9 63798543 63798630 -54063997 - LTR10A LTR ERV1 -511 98 1 1443 260 12 21 chr9 63798633 63799064 -54063563 - LTR10A-int LTR ERV1 -4 6645 6219 16497 68 40 60 chr9 63799088 63801714 -54060913 - HERVI LTR ERV1 -2741 4155 1584 6299 188 16 52 chr9 63801691 63803027 -54059600 - HERVI LTR ERV1 -3380 4405 3118 * 4187 215 4 5 chr9 63803025 63803857 -54058770 - HERVI LTR ERV1 -4778 3007 2177 * 3124 210 26 42 chr9 63803844 63804664 -54057963 - HERVI LTR ERV1 -6498 1287 481 * 837 205 79 40 chr9 63804701 63804979 -54057648 - HERVI LTR ERV1 -6360 289 1 1603 159 61 31 chr9 63804988 63805315 -54057312 - LTR10A LTR ERV1 -61 548 212 241 256 103 0 chr9 63805335 63805413 -54057214 - LTR10A LTR ERV1 -511 98 13 941 186 23 63 chr9 63805421 63805642 -54056985 + AluJo SINE Alu 101 312 0 1823 161 13 10 chr9 63805677 63805981 -54056646 + AluJb SINE Alu 1 305 -7 556 69 11 11 chr9 63805986 63806073 -54056554 + (TTCC)n Simple_repeat Simple_repeat 2 88 0 1947 164 3 6 chr9 63806091 63806403 -54056224 - AluSq SINE Alu 0 313 3 3513 148 25 3 chr9 63806436 63807024 -54055603 - LTR26 LTR ERV1 0 603 3 723 155 0 8 chr9 63807040 63807169 -54055458 + LTR24C LTR ERV1 508 635 0 304 223 48 39 chr9 63807219 63807322 -54055305 + L2 LINE L2 3149 3252 -61 10525 165 18 39 chr9 63807326 63807523 -54055104 - L1M2 LINE L1 -493 6506 6306 2178 123 0 0 chr9 63807523 63807815 -54054812 - AluSq SINE Alu -17 296 5 10525 165 18 39 chr9 63807815 63807914 -54054713 - L1M2 LINE L1 -693 6306 6206 997 105 0 0 chr9 63807914 63808047 -54054580 + FLAM_C SINE Alu 1 133 0 10525 165 18 39 chr9 63808047 63809082 -54053545 - L1M2 LINE L1 -793 6206 5151 1660 189 3 23 chr9 63809082 63809388 -54053239 - AluJb SINE Alu -12 300 1 10525 165 18 39 chr9 63809388 63809810 -54052817 - L1M2 LINE L1 -1848 5151 4722 2113 122 10 3 chr9 63809810 63810106 -54052521 - AluSx SINE Alu -14 298 1 10525 165 18 39 chr9 63810106 63810632 -54051995 - L1M2 LINE L1 -2277 4722 4293 2084 138 7 0 chr9 63810632 63810922 -54051705 + AluSx SINE Alu 1 292 -20 10525 165 18 39 chr9 63810922 63811538 -54051089 - L1M2 LINE L1 -2706 4293 3665 2209 119 0 25 chr9 63811544 63811862 -54050765 - AluSg SINE Alu 0 310 1 266 26 53 0 chr9 63811879 63811917 -54050710 + (TTTC)n Simple_repeat Simple_repeat 2 41 0 878 225 0 5 chr9 63813207 63813398 -54049229 - L1M2 LINE L1 -3183 3665 3476 985 143 12 37 chr9 63813398 63813438 -54049189 - AluSg/x SINE Alu -15 295 256 3029 127 36 4 chr9 63813438 63813933 -54048694 + MER9 LTR ERVK 1 511 0 1928 119 4 4 chr9 63813933 63814194 -54048433 - AluSx SINE Alu -51 261 1 985 143 12 37 chr9 63813933 63814053 -54048574 - AluSg/x SINE Alu -54 256 139 1921 153 0 10 chr9 63814203 63814504 -54048123 - AluSx SINE Alu -14 298 1 1630 237 23 21 chr9 63814508 63814942 -54047685 - L1M2 LINE L1 -3363 3485 3051 * 45002 42 1 3 chr9 63814918 63821086 -54041541 - L1PA4 LINE L1 0 6857 704 6214 208 25 12 chr9 63821087 63822758 -54039869 - L1M2 LINE L1 -3755 3093 1402 4327 197 13 18 chr9 63822749 63823606 -54039021 - L1M2 LINE L1 -5924 925 73 * 316 219 97 117 chr9 63823632 63823677 -54038950 - MLT1L LTR MaLR -415 200 156 1108 159 77 24 chr9 63823677 63823885 -54038742 - MER20 DNA MER1_type 0 219 1 316 219 97 117 chr9 63823885 63824035 -54038592 - MLT1L LTR MaLR -459 156 9 2204 142 0 0 chr9 63826208 63826519 -54036108 + AluSx SINE Alu 1 311 -1 347 274 28 9 chr9 63826718 63826824 -54035803 + MIR SINE MIR 32 139 -69 487 212 110 38 chr9 63826966 63827202 -54035425 - MER113 DNA MER1_type? -267 254 2 205 341 22 30 chr9 63827209 63827344 -54035283 - L2 LINE L2 -1148 2166 2033 37660 95 9 11 chr9 63827433 63833589 -54029038 + L1PA6 LINE L1 11 6152 -2 23 0 0 0 chr9 63833589 63833612 -54029015 + AT_rich Low_complexity Low_complexity 1 23 0 460 215 0 11 chr9 63834114 63834207 -54028420 - MER53 DNA DNA -73 116 25 2884 244 101 73 chr9 63834366 63834742 -54027885 - L1MC4 LINE L1 -1 8041 7677 695 203 0 0 chr9 63834742 63834860 -54027767 - FLAM_A SINE Alu -12 121 4 2884 244 101 73 chr9 63834860 63835375 -54027252 - L1MC4 LINE L1 -365 7677 7178 2259 129 3 0 chr9 63835375 63835686 -54026941 - AluSx SINE Alu 0 312 1 2884 244 101 73 chr9 63835686 63835699 -54026928 - L1MC4 LINE L1 -864 7178 7167 1964 155 10 0 chr9 63835699 63836002 -54026625 - AluSx SINE Alu -6 306 1 2884 244 101 73 chr9 63836002 63837006 -54025621 - L1MC4 LINE L1 -875 7167 6193 2236 86 27 0 chr9 63837006 63837307 -54025320 - AluSc SINE Alu 0 309 1 2884 244 101 73 chr9 63837307 63837794 -54024833 - L1MC4 LINE L1 -1849 6193 5721 2167 84 0 11 chr9 63837794 63838106 -54024521 - AluY SINE Alu 0 309 1 2884 244 101 73 chr9 63838106 63838165 -54024462 - L1MC4 LINE L1 -2321 5721 5665 1875 137 47 7 chr9 63838165 63838465 -54024162 - AluSx SINE Alu 0 312 1 2884 244 101 73 chr9 63838465 63838536 -54024091 - L1MC4 LINE L1 -2377 5665 5301 1899 146 10 0 chr9 63838826 63839120 -54023507 - AluJb SINE Alu -15 297 1 436 291 14 40 chr9 63839158 63839264 -54023363 - MIR SINE MIR -107 155 52 2101 99 14 14 chr9 63839264 63839578 -54023049 + AluSq SINE Alu 1 314 0 436 291 14 40 chr9 63839578 63839618 -54023009 - MIR SINE MIR -210 52 12 1587 158 37 30 chr9 63839776 63840074 -54022553 - AluJb SINE Alu -12 300 1 310 298 74 87 chr9 63840247 63840761 -54021866 + L2 LINE L2 2740 3270 -2 1448 144 5 0 chr9 63840887 63841095 -54021532 - MER6B DNA MER2_type 0 210 2 1934 166 67 12 chr9 63841558 63841902 -54020725 + MLT1A1 LTR MaLR 1 363 -2 406 365 55 8 chr9 63842530 63842768 -54019859 - MIR SINE MIR -8 254 6 2054 147 80 28 chr9 63845168 63845368 -54017259 - L1MB3 LINE L1 -5 6178 5990 1609 205 7 3 chr9 63845368 63845665 -54016962 - AluJb SINE Alu -12 300 3 2054 147 80 28 chr9 63845665 63845853 -54016774 - L1MB3 LINE L1 -193 5990 5770 892 172 0 0 chr9 63846600 63846728 -54015899 - FLAM_A SINE Alu -5 128 1 2235 120 0 0 chr9 63847119 63847428 -54015199 - AluSx SINE Alu -3 309 1 2406 75 0 0 chr9 63847486 63847781 -54014846 - AluY SINE Alu -16 295 1 303 327 53 0 chr9 63847837 63847950 -54014677 - MIR3 SINE MIR -37 171 53 8183 124 30 41 chr9 63849207 63849544 -54013083 + HSMAR2 DNA Mariner 4 343 -959 1719 180 13 7 chr9 63849544 63849844 -54012783 + AluJo SINE Alu 1 302 -10 8183 124 30 41 chr9 63849844 63850775 -54011852 + HSMAR2 DNA Mariner 343 1282 -20 1521 111 0 0 chr9 63850775 63851022 -54011605 - AluSg/x SINE Alu 0 328 82 8183 124 30 41 chr9 63851022 63851037 -54011590 + HSMAR2 DNA Mariner 1282 1278 -24 2256 119 0 0 chr9 63851037 63851340 -54011287 - AluSx SINE Alu -9 303 1 8183 124 30 41 chr9 63851340 63851364 -54011263 + HSMAR2 DNA Mariner 1277 1300 -2 377 277 0 127 chr9 63851419 63851585 -54011042 - L2 LINE L2 -1 3312 3168 195 100 0 0 chr9 63852118 63852148 -54010479 + (TC)n Simple_repeat Simple_repeat 2 31 0 2212 111 0 3 chr9 63852252 63852549 -54010078 - AluSq SINE Alu -17 296 1 364 278 24 1 chr9 63852789 63852917 -54009710 + L1MC4 LINE L1 7838 8042 0 897 270 148 29 chr9 63853104 63853549 -54009078 - L2 LINE L2 -6 3307 2810 3292 158 48 10 chr9 63853632 63854221 -54008406 + L1MB4 LINE L1 5569 6179 -1 581 270 115 19 chr9 63854461 63854783 -54007844 + L1ME4a LINE L1 5710 6062 -59 303 277 0 0 chr9 63854835 63854929 -54007698 - L1MC4 LINE L1 -21 8021 7928 399 128 35 0 chr9 63854966 63855052 -54007575 + (TCTA)n Simple_repeat Simple_repeat 4 92 0 572 248 36 27 chr9 63855055 63855265 -54007362 + MER58 DNA MER1_type 2 2420 0 386 219 47 55 chr9 63855285 63855488 -54007139 - L1MC4 LINE L1 -145 7897 7601 719 138 81 16 chr9 63856607 63856730 -54005897 + FLAM_C SINE Alu 1 131 -2 2973 210 64 0 chr9 63857265 63857859 -54004768 + MER82 DNA MER2_type 22 653 0 276 257 57 57 chr9 63857859 63857964 -54004663 - L2 LINE L2 -36 3236 3132 280 247 21 43 chr9 63858287 63858380 -54004247 - L2 LINE L2 -208 3064 2974 183 341 12 24 chr9 63858397 63858482 -54004145 + L2 LINE L2 3220 3303 -10 2209 109 0 26 chr9 63858619 63858923 -54003704 - AluSx SINE Alu -16 296 1 947 60 0 0 chr9 63859028 63859144 -54003483 - MSTB LTR MaLR 0 432 317 * 1021 200 26 0 chr9 63859135 63859330 -54003297 - MSTB LTR MaLR -226 200 1 198 0 0 0 chr9 63859378 63859400 -54003227 + (TG)n Simple_repeat Simple_repeat 1 22 0 1644 243 85 69 chr9 63859519 63860203 -54002424 + L1MC4 LINE L1 7334 8028 -14 1705 133 21 97 chr9 63860203 63860398 -54002229 - AluYb8 SINE Alu -5 313 153 1527 101 0 0 chr9 63860398 63860586 -54002041 - U2 snRNA snRNA 0 188 1 1705 133 21 97 chr9 63860586 63860729 -54001898 - AluYb8 SINE Alu -165 153 1 2388 68 0 7 chr9 63860997 63861289 -54001338 - AluSc SINE Alu -18 291 2 228 266 33 7 chr9 63861468 63861566 -54001061 + GA-rich Low_complexity Low_complexity 2 158 0 1907 96 0 8 chr9 63862612 63862863 -53999764 + AluSc SINE Alu 58 306 -3 469 289 29 29 chr9 63863119 63863292 -53999335 - MIR SINE MIR -16 246 74 314 309 12 0 chr9 63863322 63863403 -53999224 - MIR SINE MIR -168 94 13 1885 134 28 7 chr9 63863443 63863727 -53998900 + AluJo SINE Alu 1 290 -22 1159 160 68 5 chr9 63864071 63864277 -53998350 - AluJb SINE Alu -7 305 87 6663 181 49 95 chr9 63864294 63865185 -53997442 - L1MB7 LINE L1 -5 6415 5485 2295 95 0 16 chr9 63865185 63865490 -53997137 - AluSg1 SINE Alu -9 300 1 6663 181 49 95 chr9 63865490 63866118 -53996509 - L1MB7 LINE L1 -935 5485 4830 1370 212 14 44 chr9 63866118 63866415 -53996212 - AluJo SINE Alu -24 288 1 6663 181 49 95 chr9 63866415 63868622 -53994005 - L1MB7 LINE L1 -1590 4830 2853 1565 202 22 19 chr9 63868624 63868985 -53993642 - MLT1A1 LTR MaLR -3 362 1 1155 193 66 107 chr9 63869009 63869340 -53993287 - L1MB7 LINE L1 -3580 2802 2459 2029 143 3 0 chr9 63869340 63869641 -53992986 + AluSx SINE Alu 5 306 -6 1155 193 66 107 chr9 63869641 63870010 -53992617 - L1MB7 LINE L1 -3923 2459 2098 395 204 0 45 chr9 63870447 63870535 -53992092 + L2 LINE L2 3230 3313 0 2182 96 3 10 chr9 63870690 63870991 -53991636 - AluSx SINE Alu -1 311 13 279 0 0 0 chr9 63871725 63871756 -53990871 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2114 94 13 23 chr9 63872423 63872730 -53989897 - AluSg SINE Alu -5 305 2 2565 137 71 60 chr9 63874004 63874553 -53988074 + LTR10A LTR ERV1 1 555 -54 2213 100 3 41 chr9 63874659 63874978 -53987649 - AluSx SINE Alu -5 307 1 232 268 8 32 chr9 63875086 63875209 -53987418 - L1MCa LINE L1 -4882 1544 1425 252 215 54 32 chr9 63875220 63875313 -53987314 - L1MCa LINE L1 -4870 1546 1452 886 124 102 0 chr9 63875318 63875495 -53987132 - L1MA8 LINE L1 -3 6288 6094 585 121 0 10 chr9 63875498 63875597 -53987030 + MER4A LTR ERV1 1 98 -566 1647 131 3 84 chr9 63875597 63875972 -53986655 + MER4A LTR ERV1 261 663 -1 1819 152 131 36 chr9 63876532 63876713 -53985914 + MSTB LTR MaLR 1 163 -263 2419 81 0 3 chr9 63876713 63877010 -53985617 + AluY SINE Alu 1 296 -15 1819 152 131 36 chr9 63877010 63877217 -53985410 + MSTB LTR MaLR 163 426 0 473 269 118 0 chr9 63878402 63878521 -53984106 + L2 LINE L2 3180 3312 -1 364 280 46 40 chr9 63878622 63878797 -53983830 - L1MEc LINE L1 -3655 2885 2710 231 299 0 15 chr9 63878811 63878837 -53983790 + CT-rich Low_complexity Low_complexity 4 29 -40 1884 135 42 42 chr9 63878837 63879149 -53983478 - AluSx SINE Alu 0 312 1 231 299 0 15 chr9 63879149 63879189 -53983438 + CT-rich Low_complexity Low_complexity 29 69 0 326 325 69 67 chr9 63879219 63879594 -53983033 - L1MEc LINE L1 -3997 2724 2349 451 342 104 16 chr9 63879750 63879789 -53982838 - L1MEc LINE L1 -832 2069 2035 429 139 13 0 chr9 63879789 63879868 -53982759 - MER116 DNA Mariner 0 80 1 451 342 104 16 chr9 63879868 63880230 -53982397 - L1MEc LINE L1 -866 2035 1619 25 31 0 0 chr9 63880273 63880305 -53982322 + AT_rich Low_complexity Low_complexity 1 32 0 675 205 0 70 chr9 63880403 63880576 -53982051 - AluJb SINE Alu 0 454 301 1131 75 0 23 chr9 63880576 63880789 -53981838 + (TTTC)n Simple_repeat Simple_repeat 1 207 0 675 205 0 70 chr9 63880789 63880941 -53981686 - AluJb SINE Alu -153 301 140 2180 148 0 0 chr9 63881053 63881363 -53981264 + AluSq SINE Alu 1 310 -3 287 191 24 12 chr9 63882193 63882277 -53980350 + (TA)n Simple_repeat Simple_repeat 2 86 0 207 0 0 0 chr9 63882515 63882538 -53980089 + (CA)n Simple_repeat Simple_repeat 1 23 0 1589 184 0 39 chr9 63882659 63882968 -53979659 - AluJb SINE Alu -15 297 1 189 260 68 14 chr9 63883037 63883110 -53979517 - L2 LINE L2 -1604 1710 1634 2259 97 3 13 chr9 63884995 63885306 -53977321 + AluSx SINE Alu 1 308 -4 245 29 29 0 chr9 63885690 63885724 -53976903 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2226 101 0 0 chr9 63885726 63886014 -53976613 - AluSx SINE Alu -24 288 1 782 174 0 8 chr9 63886596 63886759 -53975868 - FLAM_C SINE Alu 0 143 3 355 296 107 18 chr9 63886853 63887022 -53975605 + L1M3d LINE L1 1604 1787 -5699 3305 220 44 38 chr9 63887079 63888449 -53974178 + L1M3d LINE L1 3040 4426 -3139 768 241 92 79 chr9 63888622 63888991 -53973636 + MLT1A2 LTR MaLR 1 374 0 1159 173 43 126 chr9 63889058 63889456 -53973171 - MLT1A1 LTR MaLR 0 365 1 1995 122 12 104 chr9 63890473 63890875 -53971752 - MLT1A1 LTR MaLR 0 365 1 21 36 0 0 chr9 63891210 63891238 -53971389 + AT_rich Low_complexity Low_complexity 1 28 0 1577 173 0 66 chr9 63891499 63891817 -53970810 - AluJo SINE Alu -15 297 1 21 36 0 0 chr9 63891851 63891879 -53970748 + AT_rich Low_complexity Low_complexity 1 28 0 2239 95 7 0 chr9 63893336 63893631 -53968996 - AluSp SINE Alu -16 297 1 21 57 0 0 chr9 63894687 63894722 -53967905 + AT_rich Low_complexity Low_complexity 1 35 0 353 243 148 59 chr9 63895800 63896002 -53966625 + MIR SINE MIR 6 225 -37 2985 115 2 5 chr9 63897575 63898010 -53964617 + MER57B LTR ERV1 1 434 0 401 276 55 48 chr9 63898782 63898968 -53963659 + MIR SINE MIR 16 205 -57 1790 162 0 36 chr9 63898994 63899296 -53963331 - AluJo SINE Alu -21 291 1 909 80 0 0 chr9 63900136 63900249 -53962378 + AluSq/x SINE Alu 1 113 -200 1246 42 13 35 chr9 63900307 63900600 -53962027 + (TTTC)n Simple_repeat Simple_repeat 1 464 0 2192 138 0 0 chr9 63900602 63900913 -53961714 - AluSq SINE Alu -2 311 1 10384 174 45 24 chr9 63901410 63903336 -53959291 - L1M1 LINE L1 -5369 2196 219 2079 131 10 13 chr9 63903336 63903649 -53958978 - AluSx SINE Alu 0 312 1 10384 174 45 24 chr9 63903649 63903858 -53958769 - L1M1 LINE L1 -7346 219 16 225 195 0 0 chr9 63904532 63904573 -53958054 - L2 LINE L2 -4 3309 3269 21 36 0 0 chr9 63904641 63904669 -53957958 + AT_rich Low_complexity Low_complexity 1 28 0 183 328 228 12 chr9 63904700 63904871 -53957756 - L2 LINE L2 -610 2704 2497 2203 131 0 0 chr9 63904914 63905220 -53957407 - AluSq SINE Alu -7 306 1 2129 202 52 19 chr9 63905240 63905759 -53956868 + LTR31 LTR ERV1 69 604 -15 2294 114 0 0 chr9 63905898 63906205 -53956422 - AluSq SINE Alu -5 308 2 2103 126 3 3 chr9 63906403 63906712 -53955915 + AluSx SINE Alu 1 309 -3 4310 135 15 32 chr9 63906966 63907693 -53954934 - LTR62 LTR ERVK -4 715 1 2453 90 0 0 chr9 63908421 63908731 -53953896 - AluSg SINE Alu 0 310 1 499 161 0 0 chr9 63909400 63909493 -53953134 - MER53 DNA DNA 0 189 97 1117 222 59 31 chr9 63909495 63909826 -53952801 + L1ME3A LINE L1 5764 6109 -61 2291 105 0 10 chr9 63909826 63910131 -53952496 - AluSx SINE Alu -10 302 1 1117 222 59 31 chr9 63910131 63910186 -53952441 + L1ME3A LINE L1 6109 6161 -9 216 163 0 0 chr9 63910246 63910289 -53952338 + (TA)n Simple_repeat Simple_repeat 1 43 0 4915 140 48 12 chr9 63911134 63912221 -53950406 + L1MA6 LINE L1 5114 6279 -33 7271 47 21 0 chr9 63912221 63913162 -53949465 - L1PA5 LINE L1 0 6154 5210 778 32 0 0 chr9 63913162 63913256 -53949371 + L1PA4 LINE L1 6058 6152 -3 27656 67 29 5 chr9 63913302 63914280 -53948347 - L1PA5 LINE L1 -917 5229 4277 2205 76 0 21 chr9 63914280 63914568 -53948059 - AluY SINE Alu -29 282 1 27656 67 29 5 chr9 63914568 63918645 -53943982 - L1PA5 LINE L1 -1869 4277 11 358 82 0 0 chr9 63918655 63918704 -53943923 + L1MA9 LINE L1 6264 6312 0 714 316 96 3 chr9 63918712 63919035 -53943592 - MARNA DNA Mariner -102 484 132 524 256 55 18 chr9 63919434 63919598 -53943029 + MIR SINE MIR 54 223 -39 1964 151 20 3 chr9 63920230 63920535 -53942092 + AluSx SINE Alu 3 312 0 339 181 277 0 chr9 63920958 63921052 -53941575 + MIR SINE MIR 73 192 -70 212 152 0 0 chr9 63921505 63921538 -53941089 + MIR SINE MIR 209 241 -21 1931 114 54 7 chr9 63922307 63922605 -53940022 - AluSx SINE Alu 0 312 1 961 279 92 5 chr9 63922767 63923136 -53939491 - MLT1I LTR MaLR -8 401 1 1717 179 7 7 chr9 63923943 63924244 -53938383 + AluJb SINE Alu 1 301 -11 835 159 17 2 chr9 63925435 63925670 -53936957 + MSTC LTR MaLR 1 287 -141 1744 214 87 101 chr9 63925684 63926589 -53936038 + LTR1B LTR ERV1 10 1020 0 852 179 14 0 chr9 63926589 63926731 -53935896 + MSTC LTR MaLR 284 427 -1 211 250 250 0 chr9 63926783 63926867 -53935760 + L3b LINE CR1 1294 1398 -185 34 0 0 0 chr9 63927423 63927457 -53935170 + AT_rich Low_complexity Low_complexity 1 34 0 2170 127 7 0 chr9 63927467 63927775 -53934852 - AluSx SINE Alu -2 310 1 206 250 0 54 chr9 63927829 63927885 -53934742 - MIR SINE MIR -94 168 116 412 267 84 63 chr9 63927976 63928167 -53934460 - MER91A DNA MER1_type 0 196 2 281 204 0 0 chr9 63928249 63928298 -53934329 + L2 LINE L2 3224 3272 0 1971 153 55 6 chr9 63930128 63930474 -53932153 + MSTA LTR MaLR 66 428 0 2580 48 0 22 chr9 63930848 63931161 -53931466 - AluY SINE Alu -1 310 5 248 264 0 56 chr9 63931690 63931762 -53930865 + L2 LINE L2 3203 3270 -2 711 266 75 14 chr9 63931848 63932062 -53930565 - MIR SINE MIR -34 228 2 10672 178 65 75 chr9 63932718 63933056 -53929571 - L1MCa LINE L1 -1289 5137 4797 750 211 0 0 chr9 63933056 63933184 -53929443 - FLAM_A SINE Alu -2 131 4 10672 178 65 75 chr9 63933184 63934323 -53928304 - L1MCa LINE L1 -1629 4797 3649 1850 164 0 0 chr9 63934323 63934604 -53928023 + AluSx SINE Alu 19 299 -13 10672 178 65 75 chr9 63934604 63935308 -53927319 - L1MCa LINE L1 -2777 3649 2940 1906 128 64 7 chr9 63935308 63935590 -53927037 + AluSx SINE Alu 1 298 -14 10672 178 65 75 chr9 63935590 63936435 -53926192 - L1MCa LINE L1 -3486 2940 2089 2080 128 0 20 chr9 63936435 63936733 -53925894 - AluSg SINE Alu -18 292 1 10672 178 65 75 chr9 63936733 63937668 -53924959 - L1MCa LINE L1 -4337 2089 1147 1561 210 3 10 chr9 63937668 63937963 -53924664 - AluJo SINE Alu -15 297 5 10672 178 65 75 chr9 63937963 63939074 -53923553 - L1MCa LINE L1 -5279 1147 27 192 97 0 0 chr9 63939074 63939105 -53923522 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1643 166 19 4 chr9 63939109 63939380 -53923247 - AluSx SINE Alu -37 275 1 10672 178 65 75 chr9 63939380 63939467 -53923160 - L1MCa LINE L1 -6402 24 19 313 301 0 0 chr9 63939500 63939583 -53923044 + L2 LINE L2 3231 3313 0 4285 179 48 14 chr9 63939768 63940679 -53921948 - L1MB8 LINE L1 -6 6172 5238 255 355 60 17 chr9 63941901 63942111 -53920516 + MIR SINE MIR 10 230 -32 258 226 15 0 chr9 63942435 63942515 -53920112 + L1ME LINE L1 5369 5449 -735 317 306 28 28 chr9 63942591 63942735 -53919892 + L1ME LINE L1 5585 5728 -393 2453 80 0 0 chr9 63942892 63943193 -53919434 + AluY SINE Alu 1 301 -10 2082 114 0 72 chr9 63943781 63944115 -53918512 + AluSx SINE Alu 1 310 -2 1856 125 52 0 chr9 63944186 63944475 -53918152 - AluSq SINE Alu -9 304 1 202 238 0 0 chr9 63945981 63946023 -53916604 + L2 LINE L2 3266 3307 -6 466 289 110 45 chr9 63946052 63946426 -53916201 - MLT1I LTR MaLR -4 405 8 335 298 18 0 chr9 63946557 63946671 -53915956 - MER103 DNA DNA -2 164 49 203 269 11 86 chr9 63946702 63946795 -53915832 - L2 LINE L2 0 3272 3187 2501 81 0 0 chr9 63947097 63947404 -53915223 + AluSx SINE Alu 1 307 -5 256 255 0 0 chr9 63947855 63947906 -53914721 - L1MC/D LINE L1 -2021 5787 5737 1553 133 18 43 chr9 63948034 63948312 -53914315 + L1MA5A LINE L1 6022 6292 -5 2313 113 0 0 chr9 63948360 63948671 -53913956 + AluSq SINE Alu 3 313 0 271 264 33 22 chr9 63949216 63949307 -53913320 - MIR SINE MIR -82 180 89 29 0 0 0 chr9 63950085 63950114 -53912513 + AT_rich Low_complexity Low_complexity 1 29 0 2347 92 0 0 chr9 63951490 63951783 -53910844 - AluSg SINE Alu -15 295 3 275 214 0 18 chr9 63953197 63953253 -53909374 - L2 LINE L2 -15 3298 3244 401 234 21 28 chr9 63953695 63953836 -53908791 - L1MA9 LINE L1 -175 6137 5998 1205 242 84 49 chr9 63953843 63954414 -53908213 + LTR28 LTR ERV1 430 1020 0 2575 215 9 0 chr9 63954416 63955171 -53907456 - L1MA9 LINE L1 -702 5610 4850 47 44 0 0 chr9 63955387 63955455 -53907172 + AT_rich Low_complexity Low_complexity 1 68 0 1170 81 7 0 chr9 63955594 63955765 -53906862 + L1PA10 LINE L1 5999 6170 0 17232 90 76 69 chr9 63955773 63956137 -53906490 + MER57B-int LTR ERV1 4664 5024 -2513 2274 99 3 0 chr9 63956137 63956429 -53906198 - AluSx SINE Alu -15 297 5 17232 90 76 69 chr9 63956429 63957197 -53905430 + MER57B-int LTR ERV1 5024 5785 -1752 2425 76 7 0 chr9 63957197 63957500 -53905127 - AluY SINE Alu -6 305 1 17232 90 76 69 chr9 63957500 63958192 -53904435 + MER57B-int LTR ERV1 5785 6471 -1066 1549 75 10 5 chr9 63958192 63958392 -53904235 - AluSg/x SINE Alu -15 294 94 17232 90 76 69 chr9 63958392 63959420 -53903207 + MER57B-int LTR ERV1 6471 7537 0 2718 123 20 17 chr9 63959420 63959828 -53902799 + MER57B LTR ERV1 1 409 -25 344 269 84 94 chr9 63960263 63960315 -53902312 - L1MC4a LINE L1 -1924 5884 5833 2252 114 3 0 chr9 63960315 63960622 -53902005 - AluSq SINE Alu -5 308 1 344 269 84 94 chr9 63960622 63960952 -53901675 - L1MC4a LINE L1 -1975 5833 5506 405 0 0 0 chr9 63961201 63961246 -53901381 + (CA)n Simple_repeat Simple_repeat 2 46 0 430 108 24 0 chr9 63961293 63961376 -53901251 + (TA)n Simple_repeat Simple_repeat 2 86 0 2194 103 3 0 chr9 63961423 63961713 -53900914 - AluSq SINE Alu -18 295 5 331 299 79 18 chr9 63962244 63962408 -53900219 - MIR SINE MIR -42 220 47 1908 124 57 3 chr9 63962554 63962837 -53899790 + AluSx SINE Alu 1 298 -14 777 257 122 17 chr9 63964252 63964606 -53898021 + LTR16C LTR ERVL 99 489 -2 901 213 0 0 chr9 63965120 63965280 -53897347 + AluJb SINE Alu 140 299 -13 684 268 35 31 chr9 63965788 63966016 -53896611 + MIR SINE MIR 32 260 -2 2220 96 3 22 chr9 63966419 63966732 -53895895 + AluSp SINE Alu 1 307 -6 411 21 0 0 chr9 63967411 63967459 -53895168 + (CAA)n Simple_repeat Simple_repeat 1 48 0 566 230 39 56 chr9 63967861 63968039 -53894588 - MLT1K LTR MaLR -15 573 399 477 269 81 16 chr9 63968341 63968527 -53894100 - MER112 DNA MER1_type -20 240 43 294 322 6 44 chr9 63968529 63968712 -53893915 + (TATATG)n Simple_repeat Simple_repeat 4 179 0 * 296 345 0 0 chr9 63968601 63968717 -53893910 + (TA)n Simple_repeat Simple_repeat 1 116 0 607 206 0 20 chr9 63968720 63968866 -53893761 + Charlie5 DNA MER1_type 2482 2624 0 189 0 0 0 chr9 63969154 63969175 -53893452 + (TGAA)n Simple_repeat Simple_repeat 4 24 0 471 221 26 91 chr9 63969957 63970111 -53892516 + MIR SINE MIR 63 206 -56 308 295 11 11 chr9 63970395 63970490 -53892137 - L2 LINE L2 -560 2754 2660 659 266 40 31 chr9 63970527 63970753 -53891874 + MIR SINE MIR 12 239 -23 193 313 15 15 chr9 63970775 63970842 -53891785 - L2 LINE L2 -668 2646 2580 939 241 43 5 chr9 63970904 63971111 -53891516 + MER58C DNA MER1_type 1 215 0 2227 105 0 3 chr9 63971172 63971468 -53891159 - AluSx SINE Alu -17 295 1 2064 132 0 13 chr9 63971609 63971912 -53890715 - AluSx SINE Alu -9 303 5 678 55 18 28 chr9 63972575 63972684 -53889943 + (TTCCC)n Simple_repeat Simple_repeat 1 108 0 1857 78 41 22 chr9 63972686 63972955 -53889672 - MER4-int LTR ERV1 0 6598 6325 505 174 11 38 chr9 63972964 63973148 -53889479 + CT-rich Low_complexity Low_complexity 1 179 0 200 322 246 0 chr9 63973148 63973266 -53889361 - L2 LINE L2 -1 3312 3166 345 238 0 12 chr9 63973407 63973487 -53889140 - LTR16A1 LTR ERVL -2 455 377 459 241 105 43 chr9 63973487 63973649 -53888978 + MER96 DNA MER1_type 3 174 -1 1817 200 16 16 chr9 63973795 63974170 -53888457 + L1 LINE L1 4456 4830 -1316 2130 141 0 3 chr9 63974179 63974492 -53888135 + AluSx SINE Alu 1 312 0 243 88 0 0 chr9 63974492 63974526 -53888101 + (GA)n Simple_repeat Simple_repeat 1 34 0 3495 122 34 0 chr9 63974528 63975042 -53887585 + Tigger3b DNA MER2_type 1 532 -699 2278 116 73 14 chr9 63975042 63975386 -53887241 - THE1B LTR MaLR 0 364 1 4089 138 44 3 chr9 63975387 63975523 -53887104 + Tigger3b DNA MER2_type 525 654 -2374 2302 110 0 0 chr9 63975523 63975824 -53886803 - AluSx SINE Alu -11 301 1 4089 138 44 3 chr9 63975824 63976366 -53886261 + Tigger3b DNA MER2_type 654 1231 0 2190 225 36 53 chr9 63976366 63977055 -53885572 + L1MC/D LINE L1 4829 5482 -995 2233 115 0 0 chr9 63977055 63977351 -53885276 - AluSx SINE Alu -16 296 1 2190 225 36 53 chr9 63977351 63977600 -53885027 + L1MC/D LINE L1 5482 5734 -743 1117 301 45 35 chr9 63977773 63978352 -53884275 - L2 LINE L2 -771 2543 1959 25 31 0 0 chr9 63978796 63978828 -53883799 + AT_rich Low_complexity Low_complexity 1 32 0 297 252 42 70 chr9 63980067 63980210 -53882417 - L1MC/D LINE L1 -2050 5758 5620 250 294 44 0 chr9 63980224 63980292 -53882335 - MER2 DNA MER2_type -3 342 272 278 257 14 0 chr9 63980617 63980687 -53881940 + (CA)n Simple_repeat Simple_repeat 2 72 0 2325 85 0 0 chr9 63980704 63980997 -53881630 + AluSc SINE Alu 1 293 -16 1244 153 5 19 chr9 63981007 63981216 -53881411 - MER2 DNA MER2_type -139 206 1 282 256 81 0 chr9 63981237 63981323 -53881304 - L1MC/D LINE L1 -506 5615 5523 461 282 21 28 chr9 63981574 63981716 -53880911 - L2 LINE L2 0 3313 3173 394 301 0 72 chr9 63982500 63982666 -53879961 + MER5A DNA MER1_type 35 188 -1 1988 138 0 3 chr9 63983018 63983314 -53879313 - AluSx SINE Alu -17 295 1 208 435 22 0 chr9 63983406 63983544 -53879083 + MER5A DNA MER1_type 21 161 -28 378 272 190 31 chr9 63983568 63983763 -53878864 + MIR SINE MIR 36 261 -1 346 347 17 34 chr9 63983917 63984093 -53878534 + MER5A DNA MER1_type 4 176 -13 1129 241 173 30 chr9 63985471 63985865 -53876762 - LTR16A LTR ERVL 0 450 1 2263 152 36 8 chr9 63986204 63986560 -53876067 + MER47A DNA MER2_type 1 366 0 928 127 75 17 chr9 63988208 63988362 -53874265 - MER53 DNA DNA -2 187 21 2324 122 36 0 chr9 63988362 63988697 -53873930 + MER7A DNA MER2_type 2 346 0 928 127 75 17 chr9 63988697 63988715 -53873912 - MER53 DNA DNA -168 21 5 2210 116 3 0 chr9 63988735 63989038 -53873589 - AluSx SINE Alu -8 304 1 2785 163 82 4 chr9 63989123 63989620 -53873007 - L1MC1 LINE L1 0 6333 5798 627 188 22 22 chr9 63989620 63989758 -53872869 - L1MC1 LINE L1 -883 5263 5126 246 333 26 0 chr9 63989758 63989836 -53872791 + MIR3 SINE MIR 115 194 -14 183 74 0 0 chr9 63990374 63990394 -53872233 + (CA)n Simple_repeat Simple_repeat 2 24 -4 2333 119 78 23 chr9 63990394 63990739 -53871888 - THE1B LTR MaLR 0 364 1 183 74 0 0 chr9 63990739 63990745 -53871882 + (CA)n Simple_repeat Simple_repeat 23 28 0 248 298 48 0 chr9 63990936 63991020 -53871607 - MIR SINE MIR -69 193 106 825 186 0 0 chr9 63991061 63991190 -53871437 - FLAM_A SINE Alu -4 129 1 540 186 0 0 chr9 63991572 63991685 -53870942 + CT-rich Low_complexity Low_complexity 2 114 0 1580 241 0 10 chr9 63991685 63991988 -53870639 - AluJo SINE Alu -2 300 1 5069 174 10 15 chr9 63992823 63993621 -53869006 + L1MB5 LINE L1 5069 5868 -306 2199 92 3 0 chr9 63993621 63993938 -53868689 + AluSp SINE Alu 1 318 0 5069 174 10 15 chr9 63993938 63994244 -53868383 + L1MB5 LINE L1 5868 6174 0 208 348 43 43 chr9 63994252 63994367 -53868260 + MIR SINE MIR 3 117 -145 378 203 141 0 chr9 63996505 63996739 -53865888 + (TACGG)n Simple_repeat Simple_repeat 1 267 0 1665 157 3 32 chr9 63996836 63997148 -53865479 - AluJo SINE Alu -9 303 1 2338 102 3 3 chr9 63998917 63999230 -53863397 - AluSp SINE Alu 0 313 1 272 240 53 27 chr9 63999494 63999569 -53863058 + L2 LINE L2 3178 3254 -18 511 288 48 52 chr9 63999817 64000046 -53862581 - MIR SINE MIR -15 247 20 372 133 0 0 chr9 64001937 64001997 -53860630 + (TTCA)n Simple_repeat Simple_repeat 4 63 0 3424 181 48 16 chr9 64002088 64002540 -53860087 - L1MA7 LINE L1 0 6291 5808 2417 62 0 0 chr9 64002540 64002865 -53859762 - AluY SINE Alu 0 311 1 3424 181 48 16 chr9 64002865 64003099 -53859528 - L1MA7 LINE L1 -483 5808 5583 2435 138 13 21 chr9 64003099 64003477 -53859150 - THE1C LTR MaLR 0 375 1 3129 97 7 9 chr9 64003477 64003919 -53858708 - THE1C-int LTR MaLR 0 1580 1140 1852 114 55 0 chr9 64003909 64004182 -53858445 - THE1C-int LTR MaLR -1292 288 1 * 2453 132 13 24 chr9 64004191 64004570 -53858057 - THE1C LTR MaLR 0 375 1 1889 114 55 19 chr9 64004570 64004969 -53857658 - L1MA7 LINE L1 -704 5587 5176 298 307 50 0 chr9 64005715 64005816 -53856811 + MER103 DNA DNA 3 108 -58 947 265 112 22 chr9 64005874 64006285 -53856342 - LTR16A LTR ERVL 0 450 3 4420 118 8 49 chr9 64006455 64007186 -53855441 - MER50 LTR ERV1 -20 714 14 412 228 88 9 chr9 64007593 64007707 -53854920 - LTR33 LTR ERVL -2 519 397 216 89 0 71 chr9 64008146 64008202 -53854425 + (TTTC)n Simple_repeat Simple_repeat 4 55 0 22 35 0 0 chr9 64008249 64008278 -53854349 + AT_rich Low_complexity Low_complexity 1 29 0 2016 218 55 81 chr9 64008404 64008973 -53853654 + MLT2B3 LTR ERVL 1 554 0 894 164 27 123 chr9 64009062 64009355 -53853272 - L1MD3 LINE L1 -2 7993 7729 2265 101 3 0 chr9 64009647 64009945 -53852682 - AluSp SINE Alu -14 299 1 792 275 144 33 chr9 64009948 64010061 -53852566 - L1MEd LINE L1 -4675 1635 1536 1952 120 48 3 chr9 64010061 64010352 -53852275 + AluSx SINE Alu 1 304 -8 792 275 144 33 chr9 64010352 64011101 -53851526 - L1MEd LINE L1 -4774 1536 670 272 282 35 0 chr9 64011294 64011379 -53851248 - L1MEd LINE L1 -5750 369 282 468 174 22 22 chr9 64011506 64011598 -53851029 + LTR37B LTR ERV1 356 447 -21 238 341 210 0 chr9 64012051 64012265 -53850362 - L2 LINE L2 -87 3185 2927 692 282 80 34 chr9 64012277 64012664 -53849963 + LTR16B LTR ERVL 38 442 -22 2290 143 28 25 chr9 64012873 64013236 -53849391 - THE1B LTR MaLR 0 364 1 402 21 0 0 chr9 64014694 64014741 -53847886 + (CA)n Simple_repeat Simple_repeat 1 47 0 584 253 36 128 chr9 64016512 64016671 -53845956 + L2 LINE L2 2981 3090 -223 1718 165 14 4 chr9 64016671 64016950 -53845677 - AluJo SINE Alu -30 282 1 584 253 36 128 chr9 64016950 64017150 -53845477 + L2 LINE L2 3090 3307 -6 2170 170 112 23 chr9 64017358 64017475 -53845152 + MLT1D LTR MaLR 36 141 -364 207 0 0 0 chr9 64017475 64017498 -53845129 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2123 116 0 0 chr9 64017500 64017784 -53844843 - AluSq SINE Alu -29 284 1 2170 170 112 23 chr9 64017784 64018093 -53844534 + MLT1D LTR MaLR 141 503 -2 1856 134 10 17 chr9 64018900 64019199 -53843428 - AluSx SINE Alu -15 297 1 333 138 100 12 chr9 64019395 64019475 -53843152 + Charlie5 DNA MER1_type 39 125 -2487 * 968 175 63 28 chr9 64019473 64019725 -53842902 + Charlie5 DNA MER1_type 2234 2494 -118 5603 79 3 4 chr9 64019871 64020576 -53842051 + L1PA12 LINE L1 5465 6168 0 515 213 126 92 chr9 64020616 64020759 -53841868 - MIR SINE MIR 0 262 108 2245 96 0 0 chr9 64020759 64021051 -53841576 + AluY SINE Alu 1 292 -19 515 213 126 92 chr9 64021051 64021114 -53841513 - MIR SINE MIR -154 108 49 324 178 68 14 chr9 64021661 64021734 -53840893 + L1M4 LINE L1 3089 3165 -2981 1012 174 0 21 chr9 64022057 64022247 -53840380 + MER53 DNA DNA 1 186 -3 2414 83 0 3 chr9 64022253 64022554 -53840073 - AluSg SINE Alu -10 300 1 346 200 12 0 chr9 64022655 64022735 -53839892 - MER53 DNA DNA -86 103 23 * 394 165 13 0 chr9 64022668 64022747 -53839880 + MER53 DNA DNA 110 189 0 321 100 0 0 chr9 64023272 64023322 -53839305 + (GA)n Simple_repeat Simple_repeat 1 50 0 229 244 77 39 chr9 64023784 64023862 -53838765 - L2 LINE L2 -1 3271 3191 308 297 79 0 chr9 64024074 64024175 -53838452 + L2 LINE L2 3197 3305 -8 9856 106 61 31 chr9 64024319 64026071 -53836556 - HERVH LTR ERV1 -5909 1804 1 2084 123 57 104 chr9 64026073 64026543 -53836084 - LTR7 LTR ERV1 -2 448 1 328 320 112 0 chr9 64027130 64027255 -53835372 - MIR3 SINE MIR -10 198 60 295 228 0 0 chr9 64028204 64028261 -53834366 + MER94 DNA DNA 4 60 -74 472 180 172 30 chr9 64028464 64028603 -53834024 - MLT1F LTR MaLR -122 502 243 2406 82 3 19 chr9 64028718 64029036 -53833591 - AluSq SINE Alu 0 313 1 293 210 160 25 chr9 64029036 64029146 -53833481 - L1ME4a LINE L1 -7 6114 5986 2166 121 3 0 chr9 64029288 64029577 -53833050 + AluSx SINE Alu 1 290 -22 1437 152 16 4 chr9 64029592 64029849 -53832778 - L1MA7 LINE L1 -3 6288 6029 914 200 47 123 chr9 64030151 64030656 -53831971 - MLT1F1 LTR MaLR 0 567 13 1200 106 0 0 chr9 64030720 64030939 -53831688 + (TA)n Simple_repeat Simple_repeat 1 219 0 2102 126 3 7 chr9 64030939 64031240 -53831387 - AluSx SINE Alu -12 300 1 313 241 111 77 chr9 64031599 64031806 -53830821 - L1ME4a LINE L1 -349 5829 5616 2198 114 0 0 chr9 64031832 64032121 -53830506 - AluSg SINE Alu -21 289 1 649 260 54 49 chr9 64032357 64032561 -53830066 + MLT1E LTR MaLR 36 240 -353 919 189 193 0 chr9 64032565 64032777 -53829850 + MLT1E LTR MaLR 341 593 0 2198 148 45 73 chr9 64032942 64033382 -53829245 - MSTC LTR MaLR 0 428 1 279 227 0 15 chr9 64033611 64033677 -53828950 - MLT1F LTR MaLR -387 162 98 310 271 108 39 chr9 64033752 64033881 -53828746 + MIR3 SINE MIR 23 160 -48 1898 182 25 8 chr9 64033982 64034339 -53828288 - MER89 LTR ERV1 0 559 197 1078 180 43 37 chr9 64034387 64034698 -53827929 - MLT1D LTR MaLR 0 505 148 1691 214 30 27 chr9 64034698 64035071 -53827556 - MLT1A2 LTR MaLR 0 374 1 1078 180 43 37 chr9 64035071 64035220 -53827407 - MLT1D LTR MaLR -357 148 1 1009 185 34 0 chr9 64035239 64035417 -53827210 + MER5A DNA MER1_type 1 184 -5 231 208 21 0 chr9 64035594 64035642 -53826985 + MER117 DNA MER1_type 110 158 -39 21 36 0 0 chr9 64036853 64036881 -53825746 + AT_rich Low_complexity Low_complexity 1 28 0 759 261 0 0 chr9 64036883 64037059 -53825568 - MIR SINE MIR -6 256 81 1252 169 63 49 chr9 64038491 64038921 -53823706 + LTR54 LTR ERV1 10 505 -5 362 234 31 31 chr9 64039800 64039928 -53822699 - Charlie7 DNA MER1_type -52 2560 2433 262 250 120 22 chr9 64039919 64040011 -53822616 - Charlie7 DNA MER1_type -2511 101 1 * 282 319 87 38 chr9 64040068 64040253 -53822374 + MIR3 SINE MIR 9 202 -6 504 120 26 94 chr9 64040509 64040626 -53822001 + MLT2D LTR ERVL 5 113 -301 842 132 6 86 chr9 64040654 64040828 -53821799 - MER50 LTR ERV1 -572 162 3 210 250 56 42 chr9 64040984 64041056 -53821571 - L2 LINE L2 -77 3195 3123 634 239 47 15 chr9 64041283 64041568 -53821059 - L1MC5 LINE L1 -520 7495 7274 282 263 193 0 chr9 64041562 64041676 -53820951 - L1MC4 LINE L1 -786 7256 7121 * 1321 210 208 9 chr9 64041692 64042158 -53820469 - MLT2F LTR ERVL -25 638 80 255 277 100 31 chr9 64042862 64042992 -53819635 + MIR3 SINE MIR 67 205 -3 1319 125 0 0 chr9 64043340 64043532 -53819095 - AluSg/x SINE Alu 0 312 121 43511 33 25 1 chr9 64043539 64049540 -53813087 - L1PA2 LINE L1 -1 6154 9 1064 103 0 0 chr9 64049540 64049676 -53812951 - AluY SINE Alu -175 136 1 243 61 0 0 chr9 64051122 64051155 -53811472 + (TG)n Simple_repeat Simple_repeat 1 33 0 25 31 0 0 chr9 64051307 64051339 -53811288 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr9 64051411 64051439 -53811188 + AT_rich Low_complexity Low_complexity 1 28 0 813 217 42 55 chr9 64051506 64051723 -53810904 - MIR SINE MIR -21 241 28 2113 125 0 0 chr9 64051931 64052232 -53810395 - AluSx SINE Alu 0 303 3 335 311 108 73 chr9 64052907 64053315 -53809312 - L2 LINE L2 0 3272 2851 362 245 31 31 chr9 64053472 64053570 -53809057 - MIR SINE MIR -30 232 135 2010 156 6 27 chr9 64053601 64053664 -53808963 - MLT1B LTR MaLR -2 388 325 2077 122 3 3 chr9 64053664 64053978 -53808649 - AluSx SINE Alu 0 314 1 2010 156 6 27 chr9 64053978 64054241 -53808386 - MLT1B LTR MaLR -65 325 68 495 230 10 0 chr9 64054258 64054358 -53808269 - MIR SINE MIR -157 105 5 342 367 48 26 chr9 64054362 64054675 -53807952 - L2 LINE L2 -598 2716 2397 254 185 0 19 chr9 64055001 64055055 -53807572 + (TG)n Simple_repeat Simple_repeat 2 54 0 1747 136 35 54 chr9 64055153 64055469 -53807158 + AluJb SINE Alu 3 312 0 181 209 0 23 chr9 64055733 64055776 -53806851 - MIR SINE MIR -51 211 170 270 263 25 12 chr9 64055880 64055960 -53806667 + L2 LINE L2 3136 3216 -56 204 304 130 17 chr9 64056053 64056168 -53806459 - L2 LINE L2 0 3313 3186 29 28 0 0 chr9 64056262 64056298 -53806329 + AT_rich Low_complexity Low_complexity 1 36 0 2056 132 3 0 chr9 64056433 64056720 -53805907 - AluSx SINE Alu -13 299 12 398 276 123 92 chr9 64057040 64057333 -53805294 - L2 LINE L2 0 3272 2971 263 250 14 28 chr9 64057374 64057446 -53805181 + MER58A DNA MER1_type 1 71 -36 3212 200 26 5 chr9 64057453 64058072 -53804555 - L1MB5 LINE L1 -8 6166 5535 959 172 90 47 chr9 64058073 64058188 -53804439 - AluJo SINE Alu -69 243 134 323 44 22 0 chr9 64058188 64058233 -53804394 + (TA)n Simple_repeat Simple_repeat 2 47 0 959 172 90 47 chr9 64058233 64058350 -53804277 - AluJo SINE Alu -178 134 1 1412 103 30 17 chr9 64058356 64058589 -53804038 - L1MB5 LINE L1 -685 5489 5254 525 223 0 8 chr9 64058566 64058687 -53803940 - L1M4 LINE L1 -2469 3677 3558 * 779 250 5 22 chr9 64058687 64058871 -53803756 + MER58A DNA MER1_type 38 218 -6 1074 186 96 34 chr9 64059231 64059550 -53803077 - L1MB5 LINE L1 -320 5854 5425 27 29 0 0 chr9 64059565 64059599 -53803028 + AT_rich Low_complexity Low_complexity 1 34 0 1906 112 56 21 chr9 64059599 64059885 -53802742 - AluSq SINE Alu -17 296 1 32 26 0 0 chr9 64060326 64060365 -53802262 + AT_rich Low_complexity Low_complexity 1 39 0 1332 241 88 82 chr9 64060372 64060590 -53802037 + HAL1b LINE L1 637 852 -496 2313 112 3 0 chr9 64060590 64060894 -53801733 - AluSx SINE Alu -7 305 1 1332 241 88 82 chr9 64060894 64061357 -53801270 + HAL1b LINE L1 852 1322 -26 296 307 20 10 chr9 64062069 64062170 -53800457 + CT-rich Low_complexity Low_complexity 3 104 0 2115 87 3 7 chr9 64062819 64063107 -53799520 - AluSc SINE Alu -7 302 16 206 384 63 13 chr9 64063595 64063754 -53798873 + L2 LINE L2 3100 3266 -6 190 280 60 0 chr9 64063769 64063819 -53798808 - MIR3 SINE MIR -21 187 135 233 376 67 36 chr9 64063947 64064141 -53798486 + L2 LINE L2 2995 3194 -78 302 232 72 7 chr9 64064233 64064371 -53798256 - L1M4 LINE L1 -823 5323 5177 302 350 168 0 chr9 64064499 64064642 -53797985 - L2 LINE L2 0 3272 3106 2377 108 3 0 chr9 64064665 64064972 -53797655 + AluSp SINE Alu 1 308 -5 309 263 124 36 chr9 64065274 64065468 -53797159 + MIR SINE MIR 46 256 -6 1962 126 0 27 chr9 64065550 64065843 -53796784 + AluSg SINE Alu 1 285 -25 441 50 0 0 chr9 64065843 64065903 -53796724 + (TA)n Simple_repeat Simple_repeat 2 61 0 912 254 176 20 chr9 64066746 64066919 -53795708 + MLT1G LTR MaLR 1 146 -425 2390 119 26 32 chr9 64066919 64067296 -53795331 - THE1C LTR MaLR 0 375 1 912 254 176 20 chr9 64067296 64067624 -53795003 + MLT1G LTR MaLR 146 553 -18 532 237 17 51 chr9 64067639 64067801 -53794826 - L1ME1 LINE L1 -105 6061 5904 2273 117 0 0 chr9 64067801 64068099 -53794528 - AluSx SINE Alu -14 298 1 532 237 17 51 chr9 64068099 64068113 -53794514 - L1ME1 LINE L1 -262 5904 5891 436 200 0 0 chr9 64068114 64068184 -53794443 + FRAM SINE Alu 77 146 -30 231 36 0 0 chr9 64068188 64068216 -53794411 + (TAA)n Simple_repeat Simple_repeat 2 29 0 295 175 0 18 chr9 64068227 64068284 -53794343 + MLT1G LTR MaLR 533 588 -2 1674 159 14 4 chr9 64068914 64069191 -53793436 + AluJo SINE Alu 1 280 -32 183 42 0 0 chr9 64069192 64069216 -53793411 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2325 113 0 0 chr9 64070340 64070641 -53791986 - AluSx SINE Alu -10 302 2 1052 136 0 0 chr9 64072059 64072213 -53790414 - MLT1B LTR MaLR 0 390 237 1568 180 90 4 chr9 64072236 64072567 -53790060 - MLT1B LTR MaLR -79 311 1 1670 161 21 91 chr9 64073050 64073435 -53789192 + MLT1A2 LTR MaLR 1 358 -16 308 255 31 31 chr9 64074410 64074508 -53788119 + MIR SINE MIR 104 201 -61 212 200 18 0 chr9 64074553 64074608 -53788019 + (TATATG)n Simple_repeat Simple_repeat 4 59 0 651 275 26 16 chr9 64075790 64075983 -53786644 + MLT1J2 LTR MaLR 161 355 -95 713 154 15 37 chr9 64076541 64076677 -53785950 + FLAM_A SINE Alu 10 142 0 323 187 53 40 chr9 64076677 64076723 -53785904 + MER103 DNA DNA 53 102 -64 1112 238 0 0 chr9 64076723 64076946 -53785681 + MER58A DNA MER1_type 2 224 0 323 187 53 40 chr9 64076946 64076974 -53785653 + MER103 DNA DNA 102 128 -38 206 285 98 32 chr9 64078401 64078524 -53784103 + MIR3 SINE MIR 47 177 -31 274 226 15 30 chr9 64078586 64078665 -53783962 - MER5A DNA MER1_type -76 105 32 688 273 70 8 chr9 64079453 64079695 -53782932 + LTR33A LTR ERVL 255 511 -12 304 312 136 13 chr9 64080833 64080987 -53781640 - MIR SINE MIR -37 225 53 204 179 0 0 chr9 64082623 64082662 -53779965 + A-rich Low_complexity Low_complexity 1 39 0 6841 142 22 45 chr9 64083565 64084256 -53778371 + Tigger3b DNA MER2_type 2 707 -2321 2469 92 0 0 chr9 64084256 64084562 -53778065 + AluSg1 SINE Alu 1 306 -3 6841 142 22 45 chr9 64084562 64084837 -53777790 + Tigger3b DNA MER2_type 707 935 -2093 713 180 47 8 chr9 64084837 64084965 -53777662 - FLAM_C SINE Alu 0 133 1 6841 142 22 45 chr9 64084965 64085256 -53777371 + Tigger3b DNA MER2_type 935 1231 0 525 268 92 0 chr9 64085353 64085517 -53777110 - MER5A DNA MER1_type -3 186 8 236 219 0 61 chr9 64085662 64085744 -53776883 - MIR SINE MIR -7 255 179 249 262 58 89 chr9 64085777 64085968 -53776659 + L2 LINE L2 2992 3176 -137 843 98 0 0 chr9 64085987 64086110 -53776517 + (TTCC)n Simple_repeat Simple_repeat 2 124 0 276 299 116 20 chr9 64086197 64086344 -53776283 - MIR SINE MIR -86 176 16 6585 210 34 23 chr9 64086809 64089672 -53772955 - L1MD1 LINE L1 0 6242 3349 2497 178 22 31 chr9 64089704 64090194 -53772433 - MER66B LTR ERV1 0 486 1 1119 158 10 0 chr9 64090679 64090882 -53771745 - L1MB3 LINE L1 0 6183 5979 1880 152 52 17 chr9 64091239 64091601 -53771026 - THE1C LTR MaLR 0 375 1 270 344 11 0 chr9 64091722 64091815 -53770812 + MIR SINE MIR 46 139 -123 472 323 103 79 chr9 64091858 64092815 -53769812 + L2 LINE L2 2299 3271 -42 2080 131 0 0 chr9 64093207 64093490 -53769137 - AluJo SINE Alu -3 309 27 3908 153 54 3 chr9 64094533 64095220 -53767407 - L1MC1 LINE L1 0 6333 5612 1417 206 83 90 chr9 64095232 64095797 -53766830 - L1MC5 LINE L1 -32 7929 7368 2336 94 0 0 chr9 64095797 64096096 -53766531 - AluSx SINE Alu -13 299 1 1417 206 83 90 chr9 64096096 64096194 -53766433 - L1MC5 LINE L1 -593 7368 7271 939 203 61 5 chr9 64096223 64096420 -53766207 + MER3 DNA MER1_type 2 209 0 349 264 74 8 chr9 64096993 64097114 -53765513 + MLT1I LTR MaLR 4 132 -277 456 282 74 27 chr9 64097167 64097316 -53765311 + MLT1I LTR MaLR 244 399 -10 182 232 63 74 chr9 64097642 64097737 -53764890 + L2 LINE L2 3158 3251 -62 2547 169 7 2 chr9 64098039 64098453 -53764174 - MER47B DNA MER2_type -1 417 2 1487 138 9 0 chr9 64098585 64098803 -53763824 - AluSg/x SINE Alu -7 303 84 24 0 0 0 chr9 64098881 64098905 -53763722 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr9 64099096 64099118 -53763509 + AT_rich Low_complexity Low_complexity 1 22 0 629 262 45 79 chr9 64100410 64100821 -53761806 - MLT1L LTR MaLR 0 615 167 2628 228 62 24 chr9 64100947 64101740 -53760887 - MER69 DNA AcHobo -12 2514 1692 21 0 0 0 chr9 64101806 64101827 -53760800 + AT_rich Low_complexity Low_complexity 1 21 0 833 103 22 15 chr9 64101827 64101963 -53760664 - L1MA5A LINE L1 -1 6296 6160 817 255 137 7 chr9 64102053 64102324 -53760303 - MER69 DNA AcHobo -903 323 18 191 337 65 11 chr9 64102711 64102803 -53759824 - MIR3 SINE MIR -97 111 15 376 252 27 27 chr9 64103276 64103387 -53759240 - L2 LINE L2 0 3272 3162 809 253 178 48 chr9 64103506 64103960 -53758667 + MLT1H1 LTR MaLR 32 544 -11 401 254 90 104 chr9 64104679 64104958 -53757669 + Charlie8 DNA MER1_type 1 275 -2142 361 181 28 0 chr9 64105203 64105275 -53757352 - MER53 DNA DNA -8 181 108 537 268 49 0 chr9 64106010 64106174 -53756453 - MIR SINE MIR -13 249 78 21 0 0 0 chr9 64108936 64108957 -53753670 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr9 64111023 64111043 -53751584 + (TC)n Simple_repeat Simple_repeat 1 20 0 443 226 38 45 chr9 64111634 64111767 -53750860 - MIR SINE MIR -108 154 23 628 237 67 31 chr9 64114588 64114707 -53747920 + MER105 DNA DNA 3 133 -71 3620 98 21 142 chr9 64114707 64115428 -53747199 + MER51A LTR ERV1 1 634 0 628 237 67 31 chr9 64115428 64115502 -53747125 + MER105 DNA DNA 133 203 -1 244 278 38 101 chr9 64115622 64115831 -53746796 - L2 LINE L2 -197 3075 2880 2097 118 3 14 chr9 64116080 64116411 -53746216 + AluJo SINE Alu 1 312 0 220 267 0 17 chr9 64116557 64116617 -53746010 + CT-rich Low_complexity Low_complexity 3 61 0 21 82 0 0 chr9 64116901 64116950 -53745677 + AT_rich Low_complexity Low_complexity 1 49 0 267 343 10 0 chr9 64117511 64117610 -53745017 - MIR SINE MIR -6 256 157 344 328 25 8 chr9 64117829 64117951 -53744676 - MER5A DNA MER1_type -4 185 62 273 331 128 8 chr9 64118395 64118528 -53744099 + L2 LINE L2 2911 3059 -213 1269 162 89 120 chr9 64118684 64118732 -53743895 - MER7A DNA MER2_type -2692 346 298 2521 91 0 0 chr9 64118732 64119041 -53743586 + AluSc SINE Alu 1 309 0 1269 162 89 120 chr9 64119041 64119351 -53743276 - MER7A DNA MER2_type -2740 298 1 396 177 62 21 chr9 64119448 64119633 -53742994 + L1MA4A LINE L1 6048 6301 0 1430 228 43 6 chr9 64120035 64120364 -53742263 - MER58B DNA MER1_type 0 341 1 1737 147 34 14 chr9 64120861 64121154 -53741473 + AluSx SINE Alu 1 299 -13 1034 196 38 10 chr9 64122188 64122397 -53740230 + MER58 DNA MER1_type 45 259 -82 353 281 108 6 chr9 64122435 64122602 -53740025 + MIR SINE MIR 15 198 -64 374 325 36 12 chr9 64123458 64123624 -53739003 + MIR SINE MIR 93 262 0 2305 75 16 3 chr9 64123909 64124214 -53738413 + AluY SINE Alu 1 309 -2 1106 143 0 0 chr9 64124842 64125029 -53737598 + AluSg/x SINE Alu 131 317 0 507 262 31 42 chr9 64125290 64125326 -53737301 - MIR SINE MIR 0 262 227 1097 225 108 103 chr9 64125326 64125741 -53736886 - MLT1G1 LTR MaLR 0 595 184 312 70 0 0 chr9 64125741 64125784 -53736843 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1605 188 0 34 chr9 64125786 64126079 -53736548 - AluJo SINE Alu -29 283 1 1097 225 108 103 chr9 64126079 64126252 -53736375 - MLT1G1 LTR MaLR -411 184 1 507 262 31 42 chr9 64126252 64126406 -53736221 - MIR SINE MIR -35 227 74 367 248 106 31 chr9 64126501 64126662 -53735965 + MIR SINE MIR 79 251 -11 980 268 71 16 chr9 64126910 64127291 -53735336 - L1MC/D LINE L1 -2093 5715 5314 21 0 0 0 chr9 64127423 64127444 -53735183 + AT_rich Low_complexity Low_complexity 1 21 0 561 273 86 18 chr9 64127591 64127811 -53734816 + MER102b DNA MER1_type 107 341 0 1791 265 82 80 chr9 64128731 64129562 -53733065 + L1MEd LINE L1 46 904 -5406 2010 150 3 0 chr9 64129562 64129855 -53732772 - AluJo SINE Alu -18 294 1 1791 265 82 80 chr9 64129855 64130534 -53732093 + L1MEd LINE L1 904 1580 -4730 2297 113 6 0 chr9 64130537 64130848 -53731779 + AluSq SINE Alu 1 313 0 390 271 253 30 chr9 64131540 64132097 -53730530 + L1MEd LINE L1 2229 2909 -3220 264 217 123 57 chr9 64132143 64132249 -53730378 - Charlie8 DNA MER1_type -2197 220 108 187 245 71 51 chr9 64132325 64132423 -53730204 - L2 LINE L2 -534 2780 2681 1020 162 0 0 chr9 64132506 64132660 -53729967 - AluSg/x SINE Alu -16 294 141 196 256 0 0 chr9 64132882 64132925 -53729702 + MIR SINE MIR 220 262 0 455 307 204 4 chr9 64133196 64133460 -53729167 + L2 LINE L2 2991 3307 -6 191 354 35 9 chr9 64134130 64134243 -53728384 - MIR SINE MIR -101 161 46 * 200 250 0 0 chr9 64134216 64134252 -53728375 + MIR SINE MIR 40 75 -133 23 0 0 0 chr9 64134459 64134482 -53728145 + AT_rich Low_complexity Low_complexity 1 23 0 2376 196 32 73 chr9 64135491 64136138 -53726489 - L1MC4a LINE L1 -734 7074 6454 270 0 0 0 chr9 64137206 64137236 -53725391 + (TG)n Simple_repeat Simple_repeat 2 31 0 233 241 0 19 chr9 64137294 64137348 -53725279 + CT-rich Low_complexity Low_complexity 4 56 0 859 205 94 22 chr9 64137413 64137637 -53724990 - L1PB4 LINE L1 -1 6155 5916 298 79 0 0 chr9 64137646 64137684 -53724943 - U2 snRNA snRNA -150 38 1 287 65 22 0 chr9 64138069 64138115 -53724512 + (CAA)n Simple_repeat Simple_repeat 2 48 0 375 214 36 22 chr9 64138822 64138934 -53723693 + MLT2F LTR ERVL 3 130 -498 1287 242 58 17 chr9 64138964 64139324 -53723303 + MLT2F LTR ERVL 289 663 0 361 255 132 0 chr9 64139403 64139509 -53723118 - MIR SINE MIR -103 159 40 311 338 141 34 chr9 64139566 64139800 -53722827 + L1ME LINE L1 5378 5636 -534 239 306 0 0 chr9 64140327 64140389 -53722238 - MIR SINE MIR -57 151 90 6556 145 49 33 chr9 64140923 64142128 -53720499 + Tigger3b DNA MER2_type 8 1231 0 191 399 81 0 chr9 64142303 64142451 -53720176 + L2 LINE L2 3014 3173 -99 1030 211 5 31 chr9 64144068 64144262 -53718365 + MER5A DNA MER1_type 1 189 0 266 341 44 49 chr9 64145583 64145809 -53716818 + L2 LINE L2 2563 2787 -527 288 0 0 0 chr9 64146294 64146326 -53716301 + (TG)n Simple_repeat Simple_repeat 2 33 0 2190 98 7 10 chr9 64147482 64147777 -53714850 - AluSg SINE Alu -15 295 2 2236 101 0 3 chr9 64147778 64148066 -53714561 - AluSq SINE Alu -11 302 16 295 342 111 21 chr9 64149283 64149517 -53713110 + L2 LINE L2 2921 3175 -138 204 293 37 0 chr9 64149522 64149604 -53713023 + (TA)n Simple_repeat Simple_repeat 2 86 0 208 209 30 45 chr9 64149624 64149691 -53712936 + L2 LINE L2 3172 3237 -76 1529 192 29 4 chr9 64149761 64150042 -53712585 - AluJo SINE Alu -24 288 1 321 242 125 39 chr9 64151113 64151241 -53711386 + MIR3 SINE MIR 36 174 -34 802 197 0 0 chr9 64151854 64151976 -53710651 - FLAM_A SINE Alu -11 122 1 2300 98 0 0 chr9 64153057 64153353 -53709274 - AluSx SINE Alu -16 296 1 257 281 21 21 chr9 64153413 64153509 -53709118 - L2 LINE L2 -5 3308 3213 207 313 89 45 chr9 64153803 64153915 -53708712 + L2 LINE L2 3151 3267 -5 587 79 0 0 chr9 64154414 64154490 -53708137 - MADE1 DNA Mariner 0 80 5 230 301 45 68 chr9 64154702 64154878 -53707749 + L2 LINE L2 2742 2913 -401 425 270 83 69 chr9 64155120 64155324 -53707303 + MIR SINE MIR 40 246 -16 2403 172 125 67 chr9 64157151 64157687 -53704940 - MLT1F1 LTR MaLR 0 567 1 318 375 46 9 chr9 64157688 64157904 -53704723 + MIR SINE MIR 25 248 -14 184 258 258 8 chr9 64157950 64158070 -53704557 + MIR SINE MIR 86 235 -27 258 182 0 0 chr9 64161385 64161429 -53701198 - Charlie7 DNA MER1_type -1923 689 646 5143 154 50 65 chr9 64161454 64162567 -53700060 + L1MC3 LINE L1 6689 7785 0 1157 200 24 5 chr9 64162601 64162811 -53699816 - MER20 DNA MER1_type -4 215 2 201 195 0 0 chr9 64163487 64163528 -53699099 + (CA)n Simple_repeat Simple_repeat 2 42 0 2322 69 7 14 chr9 64163545 64163835 -53698792 + AluY SINE Alu 3 290 -21 1004 246 86 68 chr9 64164499 64164954 -53697673 - MLT1H LTR MaLR -15 534 72 2474 138 22 0 chr9 64165342 64165698 -53696929 - THE1B LTR MaLR 0 364 1 312 280 88 0 chr9 64165956 64166081 -53696546 - MIR SINE MIR -70 192 57 1890 99 103 0 chr9 64166956 64167229 -53695398 + AluSq SINE Alu 1 301 -12 213 238 20 30 chr9 64168645 64168746 -53693881 + (TTATA)n Simple_repeat Simple_repeat 5 104 0 300 53 0 0 chr9 64169026 64169064 -53693563 + (CA)n Simple_repeat Simple_repeat 2 39 0 702 303 25 20 chr9 64169436 64169680 -53692947 + MIR SINE MIR 2 246 -16 25 0 0 0 chr9 64169689 64169714 -53692913 + AT_rich Low_complexity Low_complexity 1 25 0 203 163 20 61 chr9 64171174 64171223 -53691404 + MIR SINE MIR 82 128 -80 2301 209 20 73 chr9 64171341 64171926 -53690701 - MLT2B3 LTR ERVL 0 554 1 275 235 139 26 chr9 64171936 64172051 -53690576 + MIR SINE MIR 122 249 -13 981 273 151 16 chr9 64172458 64172890 -53689737 - LTR33 LTR ERVL -3 518 29 4605 152 38 35 chr9 64172926 64173795 -53688832 + MER4D LTR ERV1 1 872 -31 339 58 211 0 chr9 64173768 64173820 -53688807 + MER4C LTR ERV1 403 465 0 * 357 231 55 0 chr9 64174002 64174093 -53688534 + MER94 DNA DNA 39 134 0 537 259 80 0 chr9 64174837 64174999 -53687628 + MLT1L LTR MaLR 99 273 -342 429 228 51 89 chr9 64175472 64175580 -53687047 + LTR33 LTR ERVL 370 472 -49 2339 90 3 0 chr9 64175580 64175870 -53686757 - AluSg SINE Alu -19 291 1 429 228 51 89 chr9 64175870 64175919 -53686708 + LTR33 LTR ERVL 472 521 0 188 304 159 36 chr9 64177028 64177166 -53685461 + L2 LINE L2 3025 3179 -93 437 250 17 8 chr9 64177171 64177291 -53685336 - L2 LINE L2 -2 3311 3191 855 191 0 18 chr9 64177372 64177540 -53685087 + FRAM SINE Alu 1 164 -12 216 258 26 121 chr9 64177696 64177760 -53684867 - L2 LINE L2 -322 2991 2923 2588 58 6 0 chr9 64177760 64178073 -53684554 + L1PA4 LINE L1 5841 6155 0 216 258 26 121 chr9 64178073 64178198 -53684429 - L2 LINE L2 -390 2923 2820 335 227 106 91 chr9 64178218 64178308 -53684319 + MIR SINE MIR 128 222 -40 1080 161 45 132 chr9 64178308 64178663 -53683964 - MER33 DNA MER1_type 0 324 1 335 227 106 91 chr9 64178663 64178704 -53683923 + MIR SINE MIR 222 261 -1 450 224 69 17 chr9 64179776 64179892 -53682735 - MIR SINE MIR -87 175 54 384 297 135 11 chr9 64180338 64180638 -53681989 + MLT1I LTR MaLR 66 408 -1 1614 293 102 35 chr9 64180939 64182158 -53680469 + L2 LINE L2 2009 3313 0 684 274 62 72 chr9 64182251 64182543 -53680084 + MER115 DNA AcHobo 11 299 -394 601 261 138 0 chr9 64182536 64182739 -53679888 + MER115 DNA AcHobo 463 693 0 * 296 280 10 10 chr9 64182939 64183039 -53679588 + L1ME4a LINE L1 5719 5818 -303 260 284 135 14 chr9 64183090 64183238 -53679389 - MIR SINE MIR -8 254 89 331 293 121 14 chr9 64183397 64183537 -53679090 + MIR SINE MIR 101 255 -7 298 239 87 38 chr9 64183868 64184052 -53678575 + L1ME4a LINE L1 5928 6120 -1 2630 39 0 7 chr9 64184212 64184519 -53678108 + AluY SINE Alu 1 305 -6 190 238 0 0 chr9 64185377 64185419 -53677208 - MIR3 SINE MIR -6 202 161 1411 334 87 25 chr9 64185486 64186018 -53676609 + L2 LINE L2 2077 2575 -697 2158 152 72 43 chr9 64186018 64186432 -53676195 + MSTC LTR MaLR 1 426 -2 1411 334 87 25 chr9 64186432 64187018 -53675609 + L2 LINE L2 2575 3267 -5 2207 118 0 0 chr9 64189669 64189966 -53672661 + AluY SINE Alu 1 297 -14 554 322 102 35 chr9 64190398 64190712 -53671915 + MLT1I LTR MaLR 75 409 0 1831 113 0 0 chr9 64191098 64191346 -53671281 - AluSc SINE Alu -1 308 61 232 321 165 0 chr9 64191486 64191595 -53671032 - L2 LINE L2 -1 3271 3145 213 94 0 0 chr9 64192418 64192450 -53670177 + (T)n Simple_repeat Simple_repeat 1 32 0 1629 122 4 0 chr9 64193398 64193627 -53669000 + AluSg/x SINE Alu 77 306 -6 407 255 178 25 chr9 64193792 64193949 -53668678 + MER5A DNA MER1_type 9 189 0 194 286 116 0 chr9 64194223 64194335 -53668292 - L2 LINE L2 -2 3270 3146 704 269 84 68 chr9 64195499 64195815 -53666812 - L1ME4a LINE L1 -71 6050 5722 1009 7 29 7 chr9 64195815 64195954 -53666673 + (TCTA)n Simple_repeat Simple_repeat 4 145 0 704 269 84 68 chr9 64195954 64196138 -53666489 - L1ME4a LINE L1 -399 5722 5542 217 67 22 22 chr9 64196630 64196675 -53665952 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 348 127 0 0 chr9 64196826 64196881 -53665746 + (GGAA)n Simple_repeat Simple_repeat 3 57 0 219 114 0 0 chr9 64197055 64197090 -53665537 + (TAA)n Simple_repeat Simple_repeat 1 35 0 970 180 50 35 chr9 64197100 64197141 -53665486 + MER3 DNA MER1_type 1 44 -165 341 266 51 51 chr9 64197141 64197318 -53665309 - MER3 DNA MER1_type 0 209 33 2455 154 54 76 chr9 64197386 64197926 -53664701 - MER44D DNA MER2_type -22 583 1 1762 179 0 26 chr9 64198025 64198337 -53664290 + AluJb SINE Alu 1 304 -8 345 255 136 52 chr9 64198353 64198611 -53664016 + L1M4 LINE L1 3105 3383 -2763 324 312 40 30 chr9 64198824 64198973 -53663654 + L1M4 LINE L1 3656 3802 -2344 2259 123 32 59 chr9 64198973 64199346 -53663281 - THE1B LTR MaLR 0 364 2 324 312 40 30 chr9 64199346 64199497 -53663130 + L1M4 LINE L1 3802 3959 -2187 461 252 96 62 chr9 64199820 64200236 -53662391 + L1M4 LINE L1 4357 4786 -1360 1231 216 151 38 chr9 64200921 64201365 -53661262 + MLT1D LTR MaLR 12 505 0 482 220 0 6 chr9 64202572 64202745 -53659882 + (TG)n Simple_repeat Simple_repeat 1 172 0 204 231 0 0 chr9 64202765 64202843 -53659784 + (TG)n Simple_repeat Simple_repeat 1 78 0 334 253 7 0 chr9 64202873 64203175 -53659452 + (TG)n Simple_repeat Simple_repeat 1 304 0 1510 151 35 12 chr9 64203177 64203436 -53659191 - AluSx SINE Alu -47 265 1 294 237 198 11 chr9 64203960 64204106 -53658521 - MIR SINE MIR -38 224 44 329 287 193 5 chr9 64204217 64204419 -53658208 - MIR SINE MIR -21 241 2 694 287 40 24 chr9 64205005 64205256 -53657371 + MIR SINE MIR 8 262 0 815 243 92 0 chr9 64205495 64205701 -53656926 - MER74B LTR ERVL -342 280 56 5438 131 46 8 chr9 64206085 64207063 -53655564 - L1PB2 LINE L1 -2 6149 5112 180 0 0 0 chr9 64207063 64207083 -53655544 + (TTA)n Simple_repeat Simple_repeat 2 21 0 5438 131 46 8 chr9 64207083 64207243 -53655384 - L1PB2 LINE L1 -1039 5112 4960 6487 208 7 7 chr9 64207252 64208625 -53654002 + L1PB2 LINE L1 3595 4967 -1179 217 300 43 129 chr9 64208625 64208835 -53653792 + L2 LINE L2 3116 3307 -6 529 275 39 29 chr9 64208846 64209053 -53653574 - LTR16C LTR ERVL 0 491 283 233 335 26 40 chr9 64210508 64210660 -53651967 + MIR3 SINE MIR 23 172 -36 583 290 87 0 chr9 64210941 64211148 -53651479 - MIR SINE MIR 0 262 38 279 194 258 0 chr9 64212251 64212344 -53650283 + MIR SINE MIR 131 247 -15 6788 224 77 62 chr9 64212720 64215934 -53646693 - L1ME1 LINE L1 -5 6161 2903 40 73 0 0 chr9 64217599 64217681 -53644946 + AT_rich Low_complexity Low_complexity 1 82 0 30 45 0 0 chr9 64217726 64217770 -53644857 + AT_rich Low_complexity Low_complexity 1 44 0 33 66 0 0 chr9 64217882 64217943 -53644684 + AT_rich Low_complexity Low_complexity 1 61 0 359 209 52 17 chr9 64217964 64218136 -53644491 + (TA)n Simple_repeat Simple_repeat 1 178 0 373 326 177 12 chr9 64219012 64219334 -53643293 + L2 LINE L2 1366 1740 -1574 390 364 23 0 chr9 64220030 64220162 -53642465 + MIR SINE MIR 48 182 -80 198 305 68 34 chr9 64221332 64221450 -53641177 - MIR3 SINE MIR -37 171 50 2037 149 55 22 chr9 64221623 64221986 -53640641 + THE1C LTR MaLR 1 375 0 216 252 80 99 chr9 64222468 64222619 -53640008 + L2 LINE L2 2924 3071 -201 1316 230 83 39 chr9 64223550 64223981 -53638646 + MLT1J2 LTR MaLR 1 450 0 337 229 31 21 chr9 64224272 64224368 -53638259 + MER5B DNA MER1_type 1 97 -81 240 352 16 16 chr9 64224532 64224660 -53637967 + MIR SINE MIR 20 147 -115 334 109 0 0 chr9 64224835 64224881 -53637746 - MADE1 DNA Mariner 0 80 35 21 0 0 0 chr9 64225826 64225847 -53636780 + AT_rich Low_complexity Low_complexity 1 21 0 832 149 15 0 chr9 64225847 64225981 -53636646 - AluJo SINE Alu -176 136 1 243 213 33 0 chr9 64226384 64226445 -53636182 + MER5A DNA MER1_type 9 71 -118 634 191 238 0 chr9 64226505 64226673 -53635954 - MER3 DNA MER1_type 0 209 2 196 200 40 20 chr9 64227357 64227407 -53635220 - L2 LINE L2 -12 3260 3210 281 274 21 11 chr9 64229022 64229117 -53633510 + MER5B DNA MER1_type 18 113 -65 185 161 0 0 chr9 64229097 64229128 -53633499 - MER5B DNA MER1_type -129 49 19 * 474 238 25 0 chr9 64229134 64229256 -53633371 + MER5A DNA MER1_type 1 125 -64 274 181 24 96 chr9 64229295 64229378 -53633249 + MER5A DNA MER1_type 113 189 0 1556 231 36 36 chr9 64230058 64230525 -53632102 + MLT1C LTR MaLR 1 467 0 499 244 65 0 chr9 64232454 64232577 -53630050 + MER94 DNA DNA 4 134 0 247 252 17 101 chr9 64233077 64233196 -53629431 + MER5B DNA MER1_type 7 115 -63 357 271 35 35 chr9 64233861 64234031 -53628596 - L1ME4a LINE L1 0 6121 5952 2303 110 0 0 chr9 64235070 64235370 -53627257 - AluSx SINE Alu -12 300 1 245 304 59 29 chr9 64235815 64236019 -53626608 - L1M4 LINE L1 -1800 4346 4137 208 324 0 74 chr9 64236073 64236181 -53626446 - L2 LINE L2 -624 2690 2591 225 139 0 0 chr9 64236230 64236273 -53626354 + (TCCA)n Simple_repeat Simple_repeat 4 46 0 228 238 0 0 chr9 64237253 64237295 -53625332 + (TG)n Simple_repeat Simple_repeat 1 42 0 283 267 26 115 chr9 64237528 64237719 -53624908 - MLT1K LTR MaLR 0 588 415 254 308 69 23 chr9 64238057 64238187 -53624440 + L2 LINE L2 3137 3272 0 2174 94 3 24 chr9 64239508 64239805 -53622822 - AluSc SINE Alu -18 291 1 378 288 0 0 chr9 64240393 64240553 -53622074 + (TG)n Simple_repeat Simple_repeat 1 160 0 335 277 0 6 chr9 64240591 64240768 -53621859 + (TG)n Simple_repeat Simple_repeat 1 176 0 260 192 0 0 chr9 64240836 64240888 -53621739 + MER4-int LTR ERV1 1111 1162 -5436 189 274 0 0 chr9 64240913 64240986 -53621641 + (TG)n Simple_repeat Simple_repeat 2 74 0 371 274 7 0 chr9 64241029 64241182 -53621445 + (TG)n Simple_repeat Simple_repeat 1 154 0 327 294 0 0 chr9 64241222 64241385 -53621242 + (TG)n Simple_repeat Simple_repeat 2 164 0 397 321 50 29 chr9 64241535 64241775 -53620852 + L2 LINE L2 2836 3080 -192 267 213 0 38 chr9 64242154 64242234 -53620393 + MER91C DNA MER1_type 64 140 0 197 357 18 0 chr9 64242234 64242290 -53620337 + L2 LINE L2 3138 3194 -78 279 259 75 86 chr9 64242552 64242707 -53619920 - MIR3 SINE MIR -25 183 31 379 335 73 29 chr9 64242865 64243247 -53619380 - MLT1K LTR MaLR -8 580 182 1798 210 32 16 chr9 64243986 64244428 -53618199 + Charlie4a DNA MER1_type 36 484 -24 2026 135 17 7 chr9 64246114 64246411 -53616216 - AluSx SINE Alu -12 300 1 756 267 9 22 chr9 64246434 64246666 -53615961 + MIR SINE MIR 34 262 0 865 216 0 0 chr9 64246692 64246859 -53615768 - FRAM SINE Alu -9 167 1 347 224 117 50 chr9 64247441 64247620 -53615007 + MIR SINE MIR 16 206 -56 2257 149 11 3 chr9 64248255 64248617 -53614010 + MLT1A1 LTR MaLR 1 365 0 25 0 0 0 chr9 64248741 64248766 -53613861 + AT_rich Low_complexity Low_complexity 1 25 0 639 175 10 65 chr9 64249221 64249301 -53613326 - MLT1F LTR MaLR -3 559 502 2062 125 0 36 chr9 64249301 64249605 -53613022 - AluSg1 SINE Alu -16 293 1 639 175 10 65 chr9 64249605 64249681 -53612946 - MLT1F LTR MaLR -60 502 423 868 235 79 22 chr9 64249719 64250003 -53612624 - MLT1F LTR MaLR -233 334 22 2317 93 7 7 chr9 64250692 64250993 -53611634 + AluSq SINE Alu 1 301 -12 425 167 11 11 chr9 64251305 64251395 -53611232 + L1MB3 LINE L1 5939 6028 -155 1910 186 43 0 chr9 64251396 64251741 -53610886 - MLT1A1 LTR MaLR -5 360 1 933 159 0 6 chr9 64251741 64251898 -53610729 + L1MB3 LINE L1 6019 6174 -9 198 274 14 41 chr9 64252233 64252306 -53610321 - MER5B DNA MER1_type -39 139 69 252 320 0 13 chr9 64252326 64252404 -53610223 + MER5B DNA MER1_type 100 176 -2 906 212 0 0 chr9 64252871 64253036 -53609591 - FRAM SINE Alu 0 166 2 1709 250 62 41 chr9 64253043 64253726 -53608901 - HsTC2a DNA Tc2 -47 697 1 300 333 70 22 chr9 64253731 64253959 -53608668 - MIR SINE MIR -4 258 20 655 208 69 40 chr9 64254464 64254637 -53607990 + MIR SINE MIR 48 225 -37 478 291 68 39 chr9 64255215 64255421 -53607206 - MIR SINE MIR -3 259 48 453 255 0 0 chr9 64255458 64255552 -53607075 + MER52A LTR ERV1 1 94 -1661 * 6449 165 143 49 chr9 64255524 64256971 -53605656 + MER52A LTR ERV1 202 1755 0 22 0 0 0 chr9 64257053 64257075 -53605552 + AT_rich Low_complexity Low_complexity 1 22 0 3350 214 60 43 chr9 64257075 64258353 -53604274 - L1ME2 LINE L1 -57 6107 4786 274 235 62 0 chr9 64259667 64259748 -53602879 - MIR3 SINE MIR -22 186 101 394 225 130 84 chr9 64260338 64260729 -53601898 + MLT1I LTR MaLR 1 409 0 2570 194 84 9 chr9 64261146 64261727 -53600900 + L1MC3 LINE L1 7143 7767 -18 237 340 9 9 chr9 64262045 64262151 -53600476 - MIR SINE MIR -97 165 60 3089 159 10 21 chr9 64262559 64263080 -53599547 - MLT2B2 LTR ERVL 0 515 1 359 288 13 33 chr9 64264011 64264164 -53598463 + CT-rich Low_complexity Low_complexity 1 150 0 1015 277 103 3 chr9 64265271 64265581 -53597046 + MER58B DNA MER1_type 1 341 0 382 276 109 13 chr9 64267323 64267479 -53595148 + MIR SINE MIR 92 262 0 183 239 0 0 chr9 64268156 64268202 -53594425 - L2 LINE L2 -2 3311 3266 29 90 0 0 chr9 64268455 64268533 -53594094 + AT_rich Low_complexity Low_complexity 1 78 0 305 161 97 0 chr9 64268741 64268803 -53593824 - L1ME2 LINE L1 -201 5963 5896 334 186 36 0 chr9 64268838 64268978 -53593649 + (TA)n Simple_repeat Simple_repeat 2 146 0 2244 96 7 3 chr9 64268999 64269290 -53593337 - AluSg SINE Alu -18 292 1 508 281 93 77 chr9 64269290 64269563 -53593064 - L1ME2 LINE L1 -297 5873 5606 2281 113 10 0 chr9 64269563 64269872 -53592755 - AluSx SINE Alu 0 312 1 508 281 93 77 chr9 64269872 64270938 -53591689 - L1ME2 LINE L1 -564 5606 4497 1615 67 148 14 chr9 64270994 64271217 -53591410 + AluY SINE Alu 37 289 -22 500 56 14 0 chr9 64271217 64271289 -53591338 + (TA)n Simple_repeat Simple_repeat 1 73 0 362 229 41 8 chr9 64271289 64271411 -53591216 - L1ME2 LINE L1 -1642 4504 4379 2310 111 0 6 chr9 64272114 64272429 -53590198 - AluSq SINE Alu 0 313 1 476 217 11 11 chr9 64272797 64272889 -53589738 + MLT1I LTR MaLR 80 171 -238 2381 104 0 0 chr9 64273307 64273616 -53589011 + AluSc SINE Alu 1 309 0 306 318 86 20 chr9 64274848 64275046 -53587581 - MIR SINE MIR -44 218 8 986 140 152 0 chr9 64277623 64277787 -53584840 - MER5A DNA MER1_type 0 189 1 498 248 29 15 chr9 64278082 64278219 -53584408 + MIR SINE MIR 8 146 -116 509 157 0 11 chr9 64278234 64278323 -53584304 - LTR67 LTR ERVL 0 557 470 830 237 63 90 chr9 64278323 64278834 -53583793 + L1MC5 LINE L1 7431 7927 -34 180 77 0 0 chr9 64279086 64279112 -53583515 + (CAAAAA)n Simple_repeat Simple_repeat 4 29 0 289 332 114 36 chr9 64279289 64279482 -53583145 - L3 LINE CR1 -121 1456 1249 2803 148 11 23 chr9 64279640 64280078 -53582549 + Tigger2a DNA MER2_type 1 433 -1 30 0 0 0 chr9 64281237 64281267 -53581360 + AT_rich Low_complexity Low_complexity 1 30 0 392 278 19 0 chr9 64281459 64281567 -53581060 + L2 LINE L2 3203 3312 -1 744 293 76 16 chr9 64281692 64282006 -53580621 + MER46C DNA MER2_type 6 338 0 1670 129 94 4 chr9 64282436 64282692 -53579935 + AluSq SINE Alu 6 284 -29 234 0 0 0 chr9 64282692 64282718 -53579909 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 214 244 13 77 chr9 64283099 64283177 -53579450 - MIR SINE MIR -113 149 77 2452 50 0 41 chr9 64284988 64285305 -53577322 + AluY SINE Alu 1 304 -7 305 282 115 32 chr9 64285672 64285828 -53576799 + MLT1I LTR MaLR 230 398 -11 23429 86 10 10 chr9 64286263 64290326 -53572301 - L1PA7 LINE L1 -4 6150 2092 2399 162 8 0 chr9 64290326 64290709 -53571918 - L1PA16 LINE L1 -2 6164 5779 343 267 114 70 chr9 64290836 64291109 -53571518 - MARNA DNA Mariner -138 448 164 243 310 60 17 chr9 64291240 64291356 -53571271 + L2 LINE L2 3193 3313 0 2412 78 0 0 chr9 64291800 64292108 -53570519 + AluY SINE Alu 1 308 -3 547 281 0 0 chr9 64293508 64293622 -53569005 + MER81 DNA DNA 1 114 0 222 233 17 33 chr9 64293623 64293683 -53568944 - L2 LINE L2 -7 3265 3207 518 259 23 15 chr9 64294509 64294592 -53568035 - L2 LINE L2 0 3313 3227 213 39 0 0 chr9 64294592 64294618 -53568009 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 518 259 23 15 chr9 64294618 64294665 -53567962 - L2 LINE L2 -86 3227 3182 385 350 150 47 chr9 64297988 64298414 -53564213 - L2 LINE L2 -4 3309 2840 265 270 74 54 chr9 64298819 64298967 -53563660 + MIR SINE MIR 34 184 -78 21 0 0 0 chr9 64299212 64299233 -53563394 + AT_rich Low_complexity Low_complexity 1 21 0 987 178 33 0 chr9 64299233 64299413 -53563214 + L1MC1 LINE L1 6148 6333 0 2309 105 3 0 chr9 64299602 64299906 -53562721 - AluSx SINE Alu -7 305 1 301 274 104 30 chr9 64299917 64300187 -53562440 - L1M4 LINE L1 -1449 4697 4408 2047 156 24 15 chr9 64300320 64300660 -53561967 - MER2 DNA MER2_type 0 344 2 242 225 42 0 chr9 64300683 64300754 -53561873 + (TA)n Simple_repeat Simple_repeat 2 75 0 359 283 54 24 chr9 64300846 64301051 -53561576 - L1M4 LINE L1 -1449 4697 4487 225 250 19 0 chr9 64301079 64301131 -53561496 + (TG)n Simple_repeat Simple_repeat 2 54 0 538 317 50 46 chr9 64301140 64301579 -53561048 + L1ME3A LINE L1 5259 5699 -471 359 256 61 37 chr9 64301610 64301803 -53560824 + L1ME3A LINE L1 5766 5964 -206 1182 169 0 36 chr9 64302070 64302289 -53560338 - AluJb SINE Alu -15 297 87 242 149 149 0 chr9 64302521 64302568 -53560059 + L2 LINE L2 3219 3272 0 418 207 17 69 chr9 64306726 64306842 -53555785 - MER94 DNA DNA -2 132 23 325 263 53 3 chr9 64306981 64307081 -53555546 + MIR SINE MIR 37 149 -65 22 0 0 0 chr9 64307083 64307105 -53555522 + AT_rich Low_complexity Low_complexity 1 22 0 1356 49 0 0 chr9 64307460 64307623 -53555004 - L1PA4 LINE L1 0 6155 5993 752 203 78 0 chr9 64307782 64307935 -53554692 - MER20 DNA MER1_type 0 219 55 4320 203 75 18 chr9 64307942 64308239 -53554388 - MER45B DNA AcHobo -548 1033 754 1812 133 72 7 chr9 64308239 64308517 -53554110 + AluSx SINE Alu 1 296 -16 4320 203 75 18 chr9 64308517 64308608 -53554019 - MER45B DNA AcHobo -827 754 670 2369 93 0 3 chr9 64308608 64308910 -53553717 + AluSq SINE Alu 1 301 -12 4320 203 75 18 chr9 64308910 64309462 -53553165 - MER45B DNA AcHobo -911 670 38 25 0 0 0 chr9 64309759 64309784 -53552843 + AT_rich Low_complexity Low_complexity 1 25 0 273 234 28 47 chr9 64310267 64310374 -53552253 + MIR SINE MIR 103 207 -55 1182 261 122 18 chr9 64310505 64310900 -53551727 - MLT1J2 LTR MaLR -14 436 1 818 271 134 36 chr9 64311418 64311857 -53550770 + Charlie8 DNA MER1_type 40 521 -1896 678 236 57 44 chr9 64311895 64312124 -53550503 - L1MB7 LINE L1 -2 6182 5951 207 0 0 0 chr9 64313220 64313243 -53549384 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 1119 283 96 10 chr9 64315177 64315573 -53547054 + LTR16A LTR ERVL 21 450 0 1543 232 31 16 chr9 64316470 64316853 -53545774 - MER74A LTR ERVL -1 557 169 2272 157 55 2 chr9 64316914 64317316 -53545311 - MSTA LTR MaLR 0 428 6 994 177 23 6 chr9 64317543 64317718 -53544909 - MER74A LTR ERVL -380 178 1 337 297 34 0 chr9 64317975 64318093 -53544534 - L1MB7 LINE L1 -2121 5687 5566 754 171 49 0 chr9 64318396 64318519 -53544108 + FLAM_A SINE Alu 10 138 -4 1734 128 87 8 chr9 64319094 64319381 -53543246 + AluSx SINE Alu 1 312 0 207 352 38 29 chr9 64320080 64320185 -53542442 - MIR SINE MIR -149 113 8 574 124 21 0 chr9 64320946 64321043 -53541584 + L1PB2 LINE L1 6053 6151 0 393 242 303 8 chr9 64321215 64321347 -53541280 - MER5B DNA MER1_type 0 178 8 346 296 178 13 chr9 64321373 64321525 -53541102 + MER5A DNA MER1_type 11 187 -2 850 85 23 40 chr9 64322216 64322393 -53540234 + (TTTC)n Simple_repeat Simple_repeat 1 174 0 1643 139 4 0 chr9 64322402 64322640 -53539987 - AluSq SINE Alu -1 312 74 1888 197 28 3 chr9 64323591 64323947 -53538680 + MLT1A1 LTR MaLR 1 365 0 1206 242 207 47 chr9 64324067 64324580 -53538047 + MLT1G1 LTR MaLR 1 595 0 283 354 104 7 chr9 64325322 64325466 -53537161 + MIR3 SINE MIR 20 177 -31 2281 71 30 14 chr9 64326401 64326696 -53535931 + AluY SINE Alu 1 300 -11 509 226 156 10 chr9 64326708 64326907 -53535720 + L1MC4a LINE L1 5674 5901 -1907 21 0 0 0 chr9 64327677 64327698 -53534929 + AT_rich Low_complexity Low_complexity 1 21 0 2271 107 7 7 chr9 64327785 64328095 -53534532 - AluSx SINE Alu -2 310 1 309 185 0 0 chr9 64328209 64328274 -53534353 + (ATG)n Simple_repeat Simple_repeat 2 66 0 237 327 79 0 chr9 64328357 64328458 -53534169 - MIR SINE MIR -57 205 97 330 200 2 0 chr9 64329371 64329437 -53533190 - MLT1E3 LTR MaLR 0 616 489 1349 215 100 83 chr9 64329629 64330169 -53532458 - MLT1E3 LTR MaLR -66 558 10 335 302 163 14 chr9 64330679 64330894 -53531733 - L2 LINE L2 -68 3245 2999 822 206 0 7 chr9 64330991 64331137 -53531490 - FRAM SINE Alu -31 145 1 258 142 113 142 chr9 64331209 64331315 -53531312 + MLT1J LTR MaLR 155 257 -254 2167 118 0 7 chr9 64331439 64331728 -53530899 + AluSx SINE Alu 13 299 -13 2122 123 7 0 chr9 64331774 64332074 -53530553 + AluSp SINE Alu 1 302 -11 722 239 0 0 chr9 64332803 64332962 -53529665 + MER70-int LTR ERVL 421 579 -4444 3327 210 18 3 chr9 64332967 64333625 -53529002 + MER70-int LTR ERVL 1818 2485 -2538 192 244 0 24 chr9 64334276 64334317 -53528310 + L2 LINE L2 3251 3290 -23 210 350 0 0 chr9 64334350 64334430 -53528197 - MIR3 SINE MIR -7 201 122 3013 113 14 49 chr9 64334464 64334953 -53527674 + MER101 LTR ERV1 3 474 0 252 118 0 0 chr9 64334954 64334988 -53527639 + MER101 LTR ERV1 385 418 -56 596 94 0 0 chr9 64335084 64335169 -53527458 + MER101 LTR ERV1 388 472 -2 1976 134 0 31 chr9 64335552 64335911 -53526716 + AluSx SINE Alu 1 350 0 643 96 0 0 chr9 64336473 64336567 -53526060 + L1PA6 LINE L1 6060 6153 -1 1960 136 14 7 chr9 64337286 64337580 -53525047 - AluJb SINE Alu -16 296 1 251 250 14 0 chr9 64337604 64337676 -53524951 - HAL1b LINE L1 -28 1320 1248 770 203 0 0 chr9 64337747 64337880 -53524747 - FLAM_C SINE Alu 0 133 1 2004 121 36 0 chr9 64337890 64338193 -53524434 - AluSx SINE Alu 0 313 1 239 329 13 0 chr9 64338564 64338640 -53523987 - MIR SINE MIR -184 78 2 363 267 28 165 chr9 64339856 64339880 -53522747 - L2 LINE L2 0 3313 3287 2468 77 3 0 chr9 64339880 64340178 -53522449 + AluSx SINE Alu 1 299 -13 363 267 28 165 chr9 64340178 64340259 -53522368 - L2 LINE L2 -26 3287 3197 2044 141 3 7 chr9 64340259 64340557 -53522070 + AluJo SINE Alu 1 297 -15 363 267 28 165 chr9 64340557 64340843 -53521784 - L2 LINE L2 -116 3197 2975 342 306 111 33 chr9 64341418 64341477 -53521150 + MER46C DNA MER2_type 5 58 -280 2198 130 0 0 chr9 64341477 64341770 -53520857 + AluSx SINE Alu 1 293 -19 342 306 111 33 chr9 64341770 64342017 -53520610 + MER46C DNA MER2_type 58 335 -3 672 296 28 9 chr9 64342606 64342819 -53519808 + MIR SINE MIR 46 262 0 2011 147 0 7 chr9 64342878 64343177 -53519450 + AluJb SINE Alu 1 297 -15 26 0 0 27 chr9 64343179 64343197 -53519430 + AT_rich Low_complexity Low_complexity 1 18 -18 261 0 0 0 chr9 64343197 64343226 -53519401 + (CA)n Simple_repeat Simple_repeat 2 30 0 26 0 0 27 chr9 64343226 64343244 -53519383 + AT_rich Low_complexity Low_complexity 18 36 0 1169 193 37 0 chr9 64343363 64343606 -53519021 - MER34 LTR ERV1 -265 277 26 195 277 64 21 chr9 64343716 64343810 -53518817 + L2 LINE L2 2994 3091 -181 1162 190 19 9 chr9 64343848 64344064 -53518563 - LTR8 LTR ERV1 0 691 474 1070 88 0 7 chr9 64344064 64344200 -53518427 + AluSq/x SINE Alu 1 135 -178 2491 66 0 25 chr9 64344200 64344518 -53518109 + AluY SINE Alu 2 311 0 1728 198 0 19 chr9 64344628 64344936 -53517691 - AluJo SINE Alu -10 302 1 2052 90 0 0 chr9 64345099 64345354 -53517273 - AluY SINE Alu -56 255 1 692 146 39 8 chr9 64345355 64345485 -53517142 + Charlie1 DNA MER1_type 2628 2761 0 380 229 52 143 chr9 64345520 64345751 -53516876 - L2 LINE L2 -1 3312 3103 496 299 256 11 chr9 64345826 64346201 -53516426 + L2 LINE L2 2830 3296 -17 2091 115 16 3 chr9 64346270 64346574 -53516053 + AluSx SINE Alu 1 308 -4 2572 48 0 0 chr9 64346611 64346903 -53515724 + AluY SINE Alu 2 293 -18 1093 207 114 4 chr9 64346909 64347180 -53515447 + AluJb SINE Alu 2 302 0 331 272 35 18 chr9 64347373 64347487 -53515140 - MIR SINE MIR -58 150 35 222 235 78 0 chr9 64348026 64348077 -53514550 - MIR SINE MIR -119 143 89 311 302 161 21 chr9 64348460 64348652 -53513975 - MIR SINE MIR -38 224 6 2054 151 74 3 chr9 64348674 64349038 -53513589 - MLT1B LTR MaLR 0 390 1 2004 82 112 0 chr9 64349160 64349428 -53513199 + AluY SINE Alu 1 298 -13 1729 170 35 3 chr9 64349488 64349776 -53512851 - AluJo SINE Alu -15 297 1 573 284 70 37 chr9 64350117 64350360 -53512267 + MIR SINE MIR 12 262 0 2007 151 0 25 chr9 64351133 64351452 -53511175 + AluJb SINE Alu 2 312 0 1001 181 226 4 chr9 64352042 64352285 -53510342 + AluJo SINE Alu 1 297 -5 1834 175 33 19 chr9 64352893 64353253 -53509374 - MLT1A1 LTR MaLR 0 365 1 235 330 78 0 chr9 64354141 64354244 -53508383 - MIR3 SINE MIR -89 119 9 1216 230 163 28 chr9 64354721 64355156 -53507471 - Charlie1a DNA MER1_type -961 494 1 464 328 94 33 chr9 64355158 64355402 -53507225 - L1M4 LINE L1 -1945 4201 3943 1688 193 23 3 chr9 64355412 64355718 -53506909 - AluJo SINE Alu 0 312 1 712 142 24 137 chr9 64356026 64356238 -53506389 + MER53 DNA DNA 2 189 0 787 148 28 21 chr9 64356806 64356948 -53505679 + AluJb SINE Alu 2 144 -168 1981 130 0 17 chr9 64356950 64357242 -53505385 + AluSx SINE Alu 25 311 -1 401 240 20 10 chr9 64358427 64358527 -53504100 + MER5A DNA MER1_type 9 109 -80 2507 74 0 3 chr9 64359144 64359453 -53503174 - AluY SINE Alu -2 309 2 195 221 59 29 chr9 64359969 64360037 -53502590 + L2 LINE L2 1962 2031 -1283 467 311 47 33 chr9 64360045 64360257 -53502370 + MIR SINE MIR 5 219 -43 199 384 0 18 chr9 64360369 64360481 -53502146 + L2 LINE L2 2223 2332 -982 588 276 25 12 chr9 64361534 64361697 -53500930 + MIR SINE MIR 13 177 -85 198 229 112 84 chr9 64361923 64362102 -53500525 + L2 LINE L2 2574 2757 -557 362 248 90 86 chr9 64363618 64363840 -53498787 - L2 LINE L2 -49 3223 3001 2151 174 110 50 chr9 64363845 64364257 -53498370 - MLT1F1 LTR MaLR -4 563 112 210 71 0 0 chr9 64364257 64364285 -53498342 + (CTATT)n Simple_repeat Simple_repeat 4 31 0 2151 174 110 50 chr9 64364285 64364389 -53498238 - MLT1F1 LTR MaLR -455 112 16 1050 243 59 13 chr9 64364406 64364645 -53497982 - MIR SINE MIR 0 262 13 189 244 0 0 chr9 64365278 64365319 -53497308 + MIR SINE MIR 212 252 -10 247 281 0 24 chr9 64365670 64365752 -53496875 + GA-rich Low_complexity Low_complexity 1 80 0 385 258 66 53 chr9 64365872 64365978 -53496649 - MIR SINE MIR -78 184 74 189 107 0 0 chr9 64365978 64366006 -53496621 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 385 258 66 53 chr9 64366006 64366050 -53496577 - MIR SINE MIR -188 74 32 315 0 0 0 chr9 64366173 64366208 -53496419 + (CA)n Simple_repeat Simple_repeat 1 35 0 265 143 20 20 chr9 64366787 64366836 -53495791 + L2 LINE L2 3259 3307 -6 287 308 179 57 chr9 64368055 64369114 -53493513 + L2 LINE L2 1181 2369 -945 200 354 24 12 chr9 64369777 64369859 -53492768 + L2 LINE L2 2983 3065 -207 868 176 13 0 chr9 64370227 64370404 -53492223 - AluSg/x SINE Alu 0 304 126 623 241 108 33 chr9 64370591 64370832 -53491795 + L2 LINE L2 2656 2914 -400 360 266 44 95 chr9 64370865 64371023 -53491604 + L2 LINE L2 3123 3272 0 246 302 64 74 chr9 64371192 64371394 -53491233 + MIR3 SINE MIR 6 205 -3 2310 94 0 0 chr9 64371950 64372238 -53490389 + AluSx SINE Alu 12 299 -13 1932 80 76 4 chr9 64372239 64372490 -53490137 + AluSq SINE Alu 34 302 -11 219 329 29 50 chr9 64372490 64372630 -53489997 - L2 LINE L2 -1325 1989 1853 292 274 74 0 chr9 64372713 64372808 -53489819 - L2 LINE L2 -2 3311 3210 226 250 0 88 chr9 64373269 64373337 -53489290 + L2 LINE L2 3211 3272 0 236 309 12 0 chr9 64373411 64373495 -53489132 - MIR SINE MIR -7 255 171 1101 127 0 0 chr9 64373606 64373756 -53488871 + AluSg/x SINE Alu 157 306 -6 272 226 17 6 chr9 64373756 64373843 -53488784 - MIR SINE MIR -173 89 1 227 283 126 81 chr9 64373868 64374091 -53488536 - L3 LINE CR1 -2 1575 1343 22 0 0 0 chr9 64374179 64374201 -53488426 + AT_rich Low_complexity Low_complexity 1 22 0 1136 151 0 11 chr9 64375953 64376132 -53486495 - AluJb SINE Alu -5 307 131 1837 117 4 0 chr9 64376142 64376412 -53486215 - AluSq SINE Alu 0 307 37 219 186 0 0 chr9 64377134 64377177 -53485450 + A-rich Low_complexity Low_complexity 3 45 0 233 229 0 49 chr9 64377529 64377590 -53485037 + L2 LINE L2 3212 3269 -3 1790 305 154 9 chr9 64378385 64379482 -53483145 + L2 LINE L2 1396 2651 -663 993 144 13 0 chr9 64379510 64379663 -53482964 - AluSg/x SINE Alu -17 293 139 653 297 86 59 chr9 64379763 64380056 -53482571 + L2 LINE L2 2638 2922 -350 2625 46 0 10 chr9 64380056 64380360 -53482267 - AluY SINE Alu -10 301 1 653 297 86 59 chr9 64380360 64380502 -53482125 + L2 LINE L2 2922 3059 -213 2158 107 7 7 chr9 64380502 64380793 -53481834 - AluJo SINE Alu -21 291 1 653 297 86 59 chr9 64380793 64380961 -53481666 + L2 LINE L2 3059 3264 -8 192 158 0 0 chr9 64380974 64381012 -53481615 + (TAGG)n Simple_repeat Simple_repeat 1 38 0 444 287 129 24 chr9 64381021 64381230 -53481397 + MIR SINE MIR 32 262 0 300 267 20 20 chr9 64381230 64381331 -53481296 + (TAGA)n Simple_repeat Simple_repeat 4 104 0 456 267 33 0 chr9 64381532 64381652 -53480975 - MIR SINE MIR -71 191 68 241 264 77 22 chr9 64382155 64382246 -53480381 - MIR SINE MIR -6 256 161 1933 138 17 20 chr9 64383526 64383823 -53478804 + AluJo SINE Alu 2 297 -15 2149 122 0 32 chr9 64383824 64384135 -53478492 + AluSx SINE Alu 1 301 -11 487 261 56 47 chr9 64384205 64384420 -53478207 + L1M4 LINE L1 5147 5363 -783 2458 78 0 0 chr9 64384488 64384783 -53477844 - AluY SINE Alu -16 295 1 720 161 0 0 chr9 64384798 64384910 -53477717 - AluSg/x SINE Alu -13 299 188 2444 55 0 42 chr9 64385134 64385444 -53477183 + AluY SINE Alu 1 297 -14 2001 155 0 3 chr9 64385855 64386151 -53476476 - AluJo SINE Alu -9 303 9 317 200 80 13 chr9 64386153 64386228 -53476399 + L3 LINE CR1 795 874 -703 368 318 34 27 chr9 64386234 64386382 -53476245 - L2 LINE L2 -4 3309 3161 487 259 9 0 chr9 64387481 64387593 -53475034 + MIR SINE MIR 53 165 -97 2613 57 0 0 chr9 64387595 64387894 -53474733 + AluY SINE Alu 1 299 -12 192 333 83 0 chr9 64387936 64388020 -53474607 - MIR SINE MIR -70 192 102 246 216 0 0 chr9 64388318 64388369 -53474258 + L2 LINE L2 3263 3313 0 199 306 92 41 chr9 64388362 64388460 -53474167 - L2 LINE L2 -837 2477 2375 * 568 341 100 47 chr9 64388597 64388937 -53473690 - L2 LINE L2 0 3272 2915 283 321 45 66 chr9 64389121 64389364 -53473263 - L2 LINE L2 -431 2883 2646 833 126 0 0 chr9 64389487 64389598 -53473029 - AluSq/x SINE Alu -179 133 23 623 79 20 0 chr9 64389612 64389713 -53472914 + Ricksha DNA DNA 2631 2733 -121 1945 141 0 17 chr9 64389713 64390004 -53472623 + AluSx SINE Alu 1 286 -26 282 29 0 0 chr9 64390006 64390041 -53472586 + (TG)n Simple_repeat Simple_repeat 2 36 0 1105 278 39 5 chr9 64390068 64390474 -53472153 - L1ME4a LINE L1 -240 5881 5462 2463 101 0 0 chr9 64390476 64390784 -53471843 + AluSx SINE Alu 1 308 -4 257 214 118 112 chr9 64391201 64391379 -53471248 - MER91A DNA MER1_type 0 196 18 236 70 0 0 chr9 64392095 64392200 -53470427 + Alu SINE Alu 260 364 0 326 356 0 9 chr9 64392239 64392354 -53470273 - MIR SINE MIR -129 133 20 925 343 46 3 chr9 64392415 64392762 -53469865 + L3 LINE CR1 1138 1499 -78 528 309 119 5 chr9 64395487 64395681 -53466946 - MIR SINE MIR -11 251 36 305 315 0 11 chr9 64395741 64395833 -53466794 - L3 LINE CR1 -459 1118 1028 339 25 0 0 chr9 64395993 64396033 -53466594 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 388 269 65 9 chr9 64396035 64396143 -53466484 - L2 LINE L2 -15 3257 3144 253 143 0 71 chr9 64396406 64396490 -53466137 + (GGGAA)n Simple_repeat Simple_repeat 1 78 0 585 304 140 14 chr9 64396649 64397064 -53465563 + L2 LINE L2 2243 2709 -605 207 250 36 0 chr9 64397406 64397462 -53465165 + L2 LINE L2 3133 3190 -82 2211 104 7 0 chr9 64397643 64397952 -53464675 + AluSx SINE Alu 1 311 0 1857 155 3 14 chr9 64397962 64398253 -53464374 + AluJo SINE Alu 1 288 -24 2023 56 4 0 chr9 64398413 64398647 -53463980 + AluY SINE Alu 1 235 -76 1564 96 55 0 chr9 64400689 64400909 -53461718 - AluY SINE Alu -79 232 1 594 189 9 9 chr9 64400909 64401020 -53461607 - MER58 DNA MER1_type -2309 111 1 1860 75 9 0 chr9 64401529 64401757 -53460870 + AluSg/x SINE Alu 73 302 -8 430 152 139 0 chr9 64402958 64403037 -53459590 + 5S rRNA rRNA 1 90 -31 2516 80 3 0 chr9 64403326 64403627 -53459000 + AluSp SINE Alu 1 302 -11 406 269 50 14 chr9 64403763 64403904 -53458723 - MIR SINE MIR -29 233 88 629 257 99 12 chr9 64404002 64404255 -53458372 + L1ME4a LINE L1 5654 5928 -193 462 251 145 34 chr9 64404305 64404540 -53458087 - MIR SINE MIR 0 262 2 2047 145 13 3 chr9 64404583 64404887 -53457740 + AluJb SINE Alu 1 307 -5 191 242 106 15 chr9 64405009 64405075 -53457552 + L3 LINE CR1 1307 1378 -199 257 298 67 39 chr9 64405239 64405343 -53457284 + L3 LINE CR1 1370 1476 -101 1552 103 5 14 chr9 64407163 64407377 -53455250 + AluSg SINE Alu 1 212 -98 992 81 0 16 chr9 64407477 64407601 -53455026 - AluSq/x SINE Alu -191 122 1 1871 135 28 0 chr9 64407676 64407958 -53454669 - AluJo SINE Alu -22 290 1 267 317 24 24 chr9 64408554 64408707 -53453920 + MIR SINE MIR 3 154 -62 204 286 0 0 chr9 64409239 64409295 -53453332 + CT-rich Low_complexity Low_complexity 1 56 0 206 250 73 0 chr9 64409698 64409766 -53452861 - MIR3 SINE MIR -18 190 118 318 223 99 8 chr9 64409920 64410041 -53452586 - MIR SINE MIR -67 141 10 2438 96 0 0 chr9 64410551 64410863 -53451764 - AluSx SINE Alu 0 312 1 268 318 24 29 chr9 64411303 64411473 -53451154 + L2 LINE L2 1802 1970 -1344 546 225 256 0 chr9 64411542 64411733 -53450894 + MIR SINE MIR 3 242 -20 233 342 32 21 chr9 64411984 64412174 -53450453 - L2 LINE L2 -894 2420 2229 713 222 0 7 chr9 64413539 64413674 -53448953 + AluJo SINE Alu 2 135 -177 2338 106 0 0 chr9 64413705 64413997 -53448630 + AluSx SINE Alu 1 292 -20 204 274 236 0 chr9 64414287 64414393 -53448234 + L3 LINE CR1 1179 1309 -268 315 221 0 47 chr9 64414551 64414637 -53447990 + L3 LINE CR1 1332 1413 -164 196 326 0 0 chr9 64414701 64414747 -53447880 + L3 LINE CR1 1517 1562 -15 405 103 26 26 chr9 64414768 64414846 -53447781 + Alu SINE Alu 223 300 -1 437 285 84 17 chr9 64414886 64415065 -53447562 - MIR SINE MIR -21 241 51 1018 179 121 22 chr9 64415296 64415519 -53447108 - AluJb SINE Alu -66 246 2 745 271 71 11 chr9 64416070 64416339 -53446288 + L1ME LINE L1 5445 5729 -392 2347 91 27 0 chr9 64416343 64416639 -53445988 + AluSx SINE Alu 1 304 -8 199 301 14 0 chr9 64416714 64416787 -53445840 - L2 LINE L2 -931 2383 2310 411 216 35 26 chr9 64418078 64418194 -53444433 - FLAM_C SINE Alu -25 118 2 2244 68 50 0 chr9 64418321 64418600 -53444027 - AluSg SINE Alu -17 293 1 234 330 231 0 chr9 64418608 64418829 -53443798 + L2 LINE L2 3001 3272 0 2221 114 10 0 chr9 64418969 64419268 -53443359 + AluSx SINE Alu 1 302 -10 505 233 8 31 chr9 64420724 64420853 -53441774 - L2 LINE L2 -20 3293 3168 301 306 57 24 chr9 64424092 64424216 -53438411 + L2 LINE L2 3186 3313 0 635 281 167 88 chr9 64424277 64424990 -53437637 - L3 LINE CR1 -3 1574 806 284 300 40 75 chr9 64424999 64425199 -53437428 - MIR SINE MIR -8 254 62 231 346 0 0 chr9 64425290 64425371 -53437256 - MIR SINE MIR -18 244 164 2366 78 0 0 chr9 64425918 64426200 -53436427 - AluSq SINE Alu -31 282 1 1019 135 49 43 chr9 64426355 64426540 -53436087 - MER20 DNA MER1_type 0 219 34 180 179 0 0 chr9 64427586 64427625 -53435002 + (GGCTG)n Simple_repeat Simple_repeat 3 41 0 198 71 0 0 chr9 64428199 64428227 -53434400 + (TG)n Simple_repeat Simple_repeat 2 29 0 356 299 0 35 chr9 64429204 64429348 -53433279 + G-rich Low_complexity Low_complexity 1 139 0 189 147 0 0 chr9 64429658 64429692 -53432935 + (TGGGGG)n Simple_repeat Simple_repeat 5 38 0 467 325 56 80 chr9 64430595 64430703 -53431924 - L2 LINE L2 0 3272 3163 2127 138 3 0 chr9 64430703 64431001 -53431626 + AluSx SINE Alu 3 301 -11 467 325 56 80 chr9 64431001 64431260 -53431367 - L2 LINE L2 -109 3163 2899 2464 62 0 3 chr9 64431260 64431548 -53431079 + AluY SINE Alu 1 287 -24 467 325 56 80 chr9 64431548 64431667 -53430960 - L2 LINE L2 -373 2899 2779 1912 153 3 0 chr9 64431667 64431954 -53430673 + AluJo SINE Alu 1 288 -24 467 325 56 80 chr9 64431954 64432208 -53430419 - L2 LINE L2 -493 2779 2554 1017 271 127 17 chr9 64432872 64433226 -53429401 + LTR33 LTR ERVL 15 407 -114 297 0 0 0 chr9 64433622 64433655 -53428972 + (TTCA)n Simple_repeat Simple_repeat 2 34 0 487 305 22 98 chr9 64433659 64433974 -53428653 - L2 LINE L2 -8 3264 2974 203 270 0 63 chr9 64434935 64434998 -53427629 - MIR3 SINE MIR -53 155 97 399 287 108 26 chr9 64435506 64435701 -53426926 - MIR SINE MIR -18 244 34 2391 92 7 0 chr9 64437763 64438066 -53424561 + AluSc SINE Alu 1 305 -4 528 304 34 71 chr9 64438253 64438519 -53424108 - L2 LINE L2 -35 3237 2982 515 277 44 97 chr9 64439244 64439790 -53422837 + L2 LINE L2 1932 2448 -866 281 309 198 4 chr9 64439898 64440348 -53422279 - L2 LINE L2 -1092 2222 1686 1480 85 21 0 chr9 64441602 64441791 -53420836 + AluSp SINE Alu 108 300 -13 220 333 147 11 chr9 64442021 64442198 -53420429 + MIR SINE MIR 46 246 -16 448 306 0 8 chr9 64442474 64442598 -53420029 + L2 LINE L2 3190 3312 -1 720 275 64 4 chr9 64443028 64443261 -53419366 - MIR SINE MIR -12 250 4 456 312 101 19 chr9 64444097 64444405 -53418222 - L2 LINE L2 -1114 2200 1868 255 211 22 56 chr9 64445070 64445160 -53417467 + GA-rich Low_complexity Low_complexity 3 89 0 267 79 0 0 chr9 64445469 64445507 -53417120 + (GA)n Simple_repeat Simple_repeat 2 39 0 2457 99 0 0 chr9 64447204 64447506 -53415121 + AluSc SINE Alu 1 302 -7 2302 94 11 0 chr9 64447512 64447798 -53414829 + AluSq SINE Alu 1 289 -24 757 233 81 5 chr9 64447952 64448162 -53414465 - MIR SINE MIR -3 259 34 219 69 0 0 chr9 64450596 64450625 -53412002 + (CAGG)n Simple_repeat Simple_repeat 4 32 0 2423 97 0 22 chr9 64452666 64452985 -53409642 + AluSx SINE Alu 1 312 0 21 0 0 0 chr9 64454512 64454533 -53408094 + GC_rich Low_complexity Low_complexity 1 21 0 473 349 101 30 chr9 64457493 64458223 -53404404 + L2 LINE L2 1128 1909 -1405 431 265 125 29 chr9 64458242 64458378 -53404249 - L2 LINE L2 0 3272 3124 2356 101 0 0 chr9 64458575 64458871 -53403756 - AluSq SINE Alu -17 296 1 354 248 135 21 chr9 64458877 64459018 -53403609 - MIR SINE MIR -104 158 2 546 309 147 25 chr9 64459075 64459558 -53403069 + L2 LINE L2 2216 2757 -557 1556 180 64 0 chr9 64459735 64460018 -53402609 - AluJo SINE Alu -11 301 1 256 333 43 17 chr9 64460398 64460515 -53402112 + L2 LINE L2 3150 3269 -3 2558 82 21 0 chr9 64460550 64460926 -53401701 - L1MA4A LINE L1 -598 5705 5322 3523 100 54 31 chr9 64460928 64461536 -53401091 + L1MA4A LINE L1 5682 6303 0 249 295 13 0 chr9 64461609 64461687 -53400940 - L2 LINE L2 -175 3097 3019 244 272 7 130 chr9 64462057 64462210 -53400417 - L2 LINE L2 -258 3014 2905 1748 141 45 21 chr9 64462210 64462224 -53400403 - AluJb SINE Alu -14 298 286 471 113 0 0 chr9 64462224 64462295 -53400332 + (TTCA)n Simple_repeat Simple_repeat 3 73 0 1748 141 45 21 chr9 64462295 64462571 -53400056 - AluJb SINE Alu -26 286 1 244 272 7 130 chr9 64462571 64462672 -53399955 - L2 LINE L2 -367 2905 2793 261 292 140 18 chr9 64462700 64462871 -53399756 + L2 LINE L2 2196 2387 -927 328 271 0 68 chr9 64463156 64463274 -53399353 + MIR SINE MIR 153 262 0 210 64 21 43 chr9 64463286 64463333 -53399294 + (TTATA)n Simple_repeat Simple_repeat 1 46 0 372 320 127 18 chr9 64464032 64464260 -53398367 + L1M4 LINE L1 3949 4201 -1945 2747 225 105 29 chr9 64464262 64465165 -53397462 + Charlie1a DNA MER1_type 1 972 -483 318 315 31 31 chr9 64465172 64465302 -53397325 + L1M4 LINE L1 4212 4341 -1805 1418 91 0 16 chr9 64465310 64465540 -53397087 - AluSq SINE Alu -15 298 1 301 43 43 0 chr9 64465551 64465598 -53397029 + (TAA)n Simple_repeat Simple_repeat 1 49 0 363 269 88 51 chr9 64465602 64465896 -53396731 + L1M4 LINE L1 4397 4701 -1445 551 282 87 98 chr9 64466098 64466297 -53396330 + MLT1H LTR MaLR 1 201 -348 2339 100 3 0 chr9 64466297 64466598 -53396029 + AluSg SINE Alu 1 302 -8 551 282 87 98 chr9 64466598 64466951 -53395676 + MLT1H LTR MaLR 201 547 -2 22 0 0 0 chr9 64467138 64467160 -53395467 + AT_rich Low_complexity Low_complexity 1 22 0 473 222 0 28 chr9 64467638 64467746 -53394881 + L2 LINE L2 3209 3313 0 945 260 14 10 chr9 64467948 64468244 -53394383 - AluSq SINE Alu -6 297 1 268 367 159 13 chr9 64468582 64468966 -53393661 + L2 LINE L2 2378 2817 -497 289 328 101 37 chr9 64469032 64469079 -53393548 + L2 LINE L2 2908 2951 -321 2155 148 42 5 chr9 64469079 64469465 -53393162 + MER57A LTR ERV1 1 400 -3 289 328 101 37 chr9 64469465 64469713 -53392914 + L2 LINE L2 2951 3222 -50 24 53 0 0 chr9 64473313 64473351 -53389276 + AT_rich Low_complexity Low_complexity 1 38 0 21 57 0 0 chr9 64474406 64474441 -53388186 + GC_rich Low_complexity Low_complexity 1 35 0 36 0 0 0 chr9 64474906 64474942 -53387685 + GC_rich Low_complexity Low_complexity 1 36 0 30 27 0 0 chr9 64475121 64475158 -53387469 + GC_rich Low_complexity Low_complexity 1 37 0 * 354 296 150 37 chr9 64475132 64475349 -53387278 + L1M2 LINE L1 822 1106 -5743 21 36 0 0 chr9 64475349 64475377 -53387250 + GC_rich Low_complexity Low_complexity 1 28 0 354 296 150 37 chr9 64475377 64475426 -53387201 + L1M2 LINE L1 1106 1148 -5701 28 79 0 0 chr9 64475681 64475744 -53386883 + GC_rich Low_complexity Low_complexity 1 63 0 24 67 0 0 chr9 64475922 64475967 -53386660 + GC_rich Low_complexity Low_complexity 1 45 0 246 81 0 0 chr9 64476620 64476657 -53385970 + (T)n Simple_repeat Simple_repeat 1 37 0 482 171 197 0 chr9 64477997 64478114 -53384513 - MER5A DNA MER1_type -49 140 1 642 280 194 27 chr9 64478299 64478860 -53383767 + L2 LINE L2 1641 2384 -930 1051 238 40 110 chr9 64478876 64479089 -53383538 + MLT1H1 LTR MaLR 1 227 -328 2483 126 19 25 chr9 64479089 64479455 -53383172 - THE1B LTR MaLR 0 364 1 1051 238 40 110 chr9 64479455 64479740 -53382887 + MLT1H1 LTR MaLR 227 422 -133 654 256 122 0 chr9 64479740 64479896 -53382731 + MER96 DNA MER1_type 1 175 0 1051 238 40 110 chr9 64479896 64480021 -53382606 + MLT1H1 LTR MaLR 422 554 -1 223 357 0 12 chr9 64480023 64480107 -53382520 + L2 LINE L2 2421 2503 -811 183 82 20 122 chr9 64480106 64480155 -53382472 + L2 LINE L2 3269 3312 -1 * 23 0 0 0 chr9 64480272 64480295 -53382332 + AT_rich Low_complexity Low_complexity 1 23 0 2027 146 143 11 chr9 64480499 64480877 -53381750 - MSTA LTR MaLR 0 428 1 192 256 128 26 chr9 64481907 64481985 -53380642 + L2 LINE L2 2707 2792 -522 1081 186 5 25 chr9 64481999 64482198 -53380429 + AluJo SINE Alu 1 195 -117 * 1226 136 11 0 chr9 64482197 64482374 -53380253 + AluJo SINE Alu 127 305 -7 509 333 6 6 chr9 64482431 64482608 -53380019 + (CA)n Simple_repeat Simple_repeat 1 177 0 438 141 56 0 chr9 64482828 64482899 -53379728 + MLT1A2 LTR MaLR 300 374 0 508 279 107 44 chr9 64482915 64482960 -53379667 + L1MC/D LINE L1 5256 5297 -2511 2008 104 10 35 chr9 64482960 64483300 -53379327 + AluSx SINE Alu 1 333 0 508 279 107 44 chr9 64483300 64483619 -53379008 + L1MC/D LINE L1 5297 5644 -2164 235 303 112 22 chr9 64483665 64483754 -53378873 - MLT1K LTR MaLR -277 311 215 368 86 0 17 chr9 64483764 64483822 -53378805 + (GA)n Simple_repeat Simple_repeat 1 57 0 498 196 227 5 chr9 64483943 64484137 -53378490 + MER5C DNA MER1_type 88 324 0 2130 128 0 13 chr9 64484852 64485158 -53377469 + AluSc SINE Alu 1 302 -7 1358 178 38 44 chr9 64485723 64486038 -53376589 - L1MC2 LINE L1 -10 6334 6022 991 283 39 61 chr9 64486586 64487095 -53375532 - L1MC2 LINE L1 -1914 5894 5397 2220 94 0 0 chr9 64488154 64488453 -53374174 + AluY SINE Alu 1 299 -12 189 205 26 0 chr9 64489137 64489176 -53373451 - L3 LINE CR1 -1059 518 479 607 296 67 25 chr9 64490469 64490709 -53371918 - L2 LINE L2 -1307 2007 1758 221 289 104 44 chr9 64491156 64491291 -53371336 + MER5A DNA MER1_type 47 189 0 4202 141 15 29 chr9 64491597 64492321 -53370306 - MER50 LTR ERV1 -20 714 1 1457 298 125 13 chr9 64492333 64493025 -53369602 + L2 LINE L2 2226 2987 -285 639 316 75 35 chr9 64493020 64493396 -53369231 + L2 LINE L2 2920 3310 -3 * 542 316 7 0 chr9 64493415 64493567 -53369060 + MIR SINE MIR 2 154 -108 2153 247 25 32 chr9 64493576 64494130 -53368497 + MLT1G LTR MaLR 1 550 -40 2216 119 0 0 chr9 64495126 64495421 -53367206 - AluSx SINE Alu -17 295 1 2533 156 29 10 chr9 64495749 64496165 -53366462 + MSTA LTR MaLR 1 424 -4 514 183 117 0 chr9 64496308 64496428 -53366199 - AluJo SINE Alu -177 135 2 597 333 80 28 chr9 64496432 64496635 -53365992 - L1M4 LINE L1 -2705 3441 3250 2012 137 10 7 chr9 64496635 64496934 -53365693 - AluSx SINE Alu -12 300 1 597 333 80 28 chr9 64496934 64497265 -53365362 - L1M4 LINE L1 -2896 3250 2879 313 362 53 19 chr9 64497518 64497725 -53364902 - L1M4 LINE L1 -3589 2557 2344 2295 93 27 0 chr9 64497739 64498040 -53364587 + AluSx SINE Alu 1 309 -3 312 270 95 40 chr9 64498100 64498300 -53364327 - L1ME4a LINE L1 -3 6118 5908 2299 125 51 26 chr9 64498356 64498708 -53363919 - THE1B LTR MaLR 0 364 4 6916 120 26 64 chr9 64499016 64500152 -53362475 - L1MA2 LINE L1 -1 6303 5125 2021 136 3 16 chr9 64500152 64500468 -53362159 - AluSx SINE Alu 0 312 1 6916 120 26 64 chr9 64500468 64500702 -53361925 - L1MA2 LINE L1 -1179 5125 4884 1915 153 0 7 chr9 64500702 64500997 -53361630 - AluSx SINE Alu -19 293 1 6916 120 26 64 chr9 64500997 64501672 -53360955 - L1MA2 LINE L1 -1420 4884 4281 678 43 43 0 chr9 64501672 64501765 -53360862 - AluYa5/8 SINE Alu 0 311 215 6916 120 26 64 chr9 64501765 64502055 -53360572 - L1MA2 LINE L1 -2023 4281 3981 1718 181 37 3 chr9 64502983 64503104 -53359523 + AluJo SINE Alu 1 116 -196 234 0 0 0 chr9 64503104 64503130 -53359497 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1718 181 37 3 chr9 64503130 64503306 -53359321 + AluJo SINE Alu 116 308 -4 321 282 0 0 chr9 64503999 64504070 -53358557 - L2 LINE L2 -4 3268 3198 1761 162 0 49 chr9 64504262 64504590 -53358037 + AluJo SINE Alu 1 312 0 2567 141 60 31 chr9 64504940 64505394 -53357233 + MLT1C LTR MaLR 1 467 0 285 109 0 0 chr9 64505572 64505618 -53357009 + (TCCC)n Simple_repeat Simple_repeat 4 49 0 2159 111 7 0 chr9 64505633 64505922 -53356705 - AluSp SINE Alu -22 291 1 448 305 90 23 chr9 64505977 64506154 -53356473 - MER5A DNA MER1_type 0 189 1 2127 163 43 33 chr9 64506224 64506616 -53356011 - MSTD LTR MaLR 0 396 1 261 296 120 19 chr9 64506853 64506961 -53355666 - L2 LINE L2 -18 3254 3136 2033 123 27 0 chr9 64508711 64508836 -53353791 + AluSc SINE Alu 1 121 -188 266 0 29 0 chr9 64508836 64508870 -53353757 + (TAA)n Simple_repeat Simple_repeat 2 36 0 2033 123 27 0 chr9 64508870 64509037 -53353590 + AluSc SINE Alu 121 301 -8 1520 162 43 61 chr9 64509274 64509436 -53353191 + L1MC3 LINE L1 7417 7580 -205 2199 100 0 0 chr9 64509436 64509755 -53352872 + AluY SINE Alu 3 321 0 1520 162 43 61 chr9 64509755 64509853 -53352774 + L1MC3 LINE L1 7580 7678 -107 1556 164 40 36 chr9 64509853 64510157 -53352470 + AluJo SINE Alu 1 305 -7 1520 162 43 61 chr9 64510157 64510270 -53352357 + L1MC3 LINE L1 7678 7785 0 2224 101 0 29 chr9 64510392 64510698 -53351929 + AluSg SINE Alu 1 297 -13 504 222 94 8 chr9 64511382 64511499 -53351128 - MER5A DNA MER1_type 0 189 63 306 234 96 0 chr9 64511912 64512006 -53350621 + MER5A DNA MER1_type 87 189 0 315 315 202 22 chr9 64512006 64512351 -53350276 + L2 LINE L2 1791 2221 -1093 276 30 0 0 chr9 64512351 64512384 -53350243 + (TC)n Simple_repeat Simple_repeat 1 33 0 315 315 202 22 chr9 64512384 64512444 -53350183 + L2 LINE L2 2221 2269 -1045 849 130 17 0 chr9 64512680 64512795 -53349832 + FLAM_C SINE Alu 2 118 -15 206 91 45 45 chr9 64512801 64512845 -53349782 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 201 392 29 44 chr9 64513363 64513567 -53349060 + L2 LINE L2 2681 2881 -433 196 282 8 16 chr9 64514651 64514775 -53347852 + CT-rich Low_complexity Low_complexity 2 124 0 687 255 37 16 chr9 64514855 64515043 -53347584 - MIR SINE MIR -55 207 16 418 245 14 63 chr9 64515128 64515271 -53347356 - MIR SINE MIR -65 197 62 4145 232 58 54 chr9 64515368 64517213 -53345414 - L1MB7 LINE L1 -8 6674 4837 277 185 0 56 chr9 64517213 64517259 -53345368 + MER2 DNA MER2_type 53 95 -250 325 246 0 0 chr9 64517259 64517324 -53345303 - MER2 DNA MER2_type 0 345 281 * 4145 232 58 54 chr9 64517267 64517351 -53345276 - L1MB7 LINE L1 -1845 4837 4755 234 235 98 0 chr9 64517351 64517402 -53345225 + MER2 DNA MER2_type 285 340 -5 4145 232 58 54 chr9 64517402 64518053 -53344574 - L1MB7 LINE L1 -1927 4755 4106 5286 249 45 22 chr9 64518056 64518119 -53344508 - L1MB7 LINE L1 -4833 1709 1649 2403 68 7 3 chr9 64518119 64518414 -53344213 - AluY SINE Alu -15 296 1 5286 249 45 22 chr9 64518414 64519829 -53342798 - L1MB7 LINE L1 -4893 1649 197 728 180 29 0 chr9 64520022 64520161 -53342466 - L1MB7 LINE L1 -6384 158 16 732 156 85 14 chr9 64520652 64520793 -53341834 + MLT1D LTR MaLR 27 177 -328 1636 117 0 0 chr9 64520811 64521034 -53341593 - AluSg/x SINE Alu -16 294 72 568 202 0 0 chr9 64521065 64521149 -53341478 + AluS SINE Alu 2 85 -228 195 42 0 0 chr9 64522603 64522627 -53340000 + (CAAAAA)n Simple_repeat Simple_repeat 3 26 0 612 302 43 31 chr9 64523706 64523964 -53338663 + LTR16C LTR ERVL 198 458 -33 658 256 43 19 chr9 64524462 64524669 -53337958 + LTR16C LTR ERVL 280 491 0 237 196 59 0 chr9 64524847 64524898 -53337729 + MARNA DNA Mariner 164 217 -369 757 154 114 0 chr9 64525153 64525276 -53337351 - AluJo SINE Alu -174 138 2 346 200 2 0 chr9 64525842 64525908 -53336719 - MLT1E3 LTR MaLR 0 616 489 1224 187 102 97 chr9 64526095 64526640 -53335987 - MLT1E3 LTR MaLR -60 586 10 2105 117 7 0 chr9 64527315 64527605 -53335022 + AluSg SINE Alu 1 292 -18 2051 211 27 21 chr9 64527800 64528320 -53334307 + MER74A LTR ERVL 1 523 -35 4288 79 0 0 chr9 64528652 64529206 -53333421 + MER41A LTR ERV1 1 554 0 1055 196 67 124 chr9 64529359 64529746 -53332881 + MLT1A1 LTR MaLR 1 365 0 50 31 0 0 chr9 64530138 64530202 -53332425 + AT_rich Low_complexity Low_complexity 1 64 0 258 57 57 0 chr9 64530209 64530262 -53332365 + (TA)n Simple_repeat Simple_repeat 1 56 0 479 252 44 37 chr9 64531058 64531193 -53331434 + L2 LINE L2 3136 3271 -1 254 265 34 48 chr9 64532732 64532879 -53329748 + L1MB7 LINE L1 5592 5736 -385 8512 41 3 0 chr9 64533107 64534163 -53328464 - MER11C LTR ERVK -12 1059 1 2133 117 0 0 chr9 64534246 64534569 -53328058 + AluSx SINE Alu 1 323 0 503 243 59 0 chr9 64534753 64534905 -53327722 + L1MB7 LINE L1 5886 6046 -138 2388 152 29 12 chr9 64535164 64535585 -53327042 + MSTA LTR MaLR 1 428 0 2235 103 0 0 chr9 64535675 64535991 -53326636 - AluSg SINE Alu 0 316 1 2486 64 0 0 chr9 64536019 64536315 -53326312 - AluY SINE Alu -15 296 1 720 275 121 47 chr9 64537279 64537766 -53324861 + LTR33A LTR ERVL 1 523 0 190 311 0 16 chr9 64537855 64537916 -53324711 - L2 LINE L2 -1 3312 3253 2435 74 0 3 chr9 64538300 64538598 -53324029 - AluY SINE Alu -14 297 1 212 230 40 27 chr9 64539128 64539202 -53323425 + GA-rich Low_complexity Low_complexity 2 76 0 25 0 0 0 chr9 64540679 64540704 -53321923 + AT_rich Low_complexity Low_complexity 1 25 0 234 203 54 95 chr9 64544818 64544892 -53317735 - MIR3 SINE MIR -25 183 113 214 286 64 53 chr9 64545325 64545496 -53317131 - L2 LINE L2 -453 2861 2689 194 298 15 69 chr9 64545927 64546058 -53316569 + MIR SINE MIR 128 251 -11 1486 208 146 23 chr9 64548468 64548940 -53313687 - MLT1E2 LTR MaLR -3 623 94 1219 206 66 59 chr9 64550412 64550853 -53311774 + MLT1D LTR MaLR 55 498 -7 222 37 0 0 chr9 64552581 64552608 -53310019 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 244 326 139 11 chr9 64553280 64553467 -53309160 - MIR SINE MIR -21 241 31 410 248 97 18 chr9 64554096 64554209 -53308418 + MIR SINE MIR 21 142 -66 201 336 39 19 chr9 64554406 64554510 -53308117 + MIR SINE MIR 51 156 -106 310 321 50 54 chr9 64554510 64554750 -53307877 + MLT1L LTR MaLR 8 246 -369 1555 164 107 0 chr9 64555411 64555709 -53306918 + MER2 DNA MER2_type 1 330 -15 449 365 99 4 chr9 64555805 64556038 -53306589 - MIR SINE MIR -2 260 6 23 33 0 0 chr9 64556867 64556897 -53305730 + AT_rich Low_complexity Low_complexity 1 30 0 358 373 30 10 chr9 64557310 64557511 -53305116 + L2 LINE L2 2856 3060 -253 463 371 30 15 chr9 64557524 64557726 -53304901 + L2 LINE L2 2430 2634 -680 1796 162 38 13 chr9 64557760 64558343 -53304284 - L1MB5 LINE L1 -534 5713 5108 2560 170 34 2 chr9 64558343 64558838 -53303789 + L1MB5 LINE L1 5724 6234 -9 1908 149 7 17 chr9 64559155 64559475 -53303152 - AluSx SINE Alu 0 317 1 267 132 0 0 chr9 64559598 64559636 -53302991 + L1MDa LINE L1 29 66 -6474 584 237 104 54 chr9 64559676 64559993 -53302634 + MER96B DNA MER1_type? 79 411 -6 251 281 0 0 chr9 64560150 64560207 -53302420 - MER5B DNA MER1_type -119 59 3 259 323 277 5 chr9 64560236 64560431 -53302196 + MIR SINE MIR 13 260 -2 2047 121 7 7 chr9 64560447 64560744 -53301883 + AluSx SINE Alu 1 297 -15 832 94 39 0 chr9 64561004 64561131 -53301496 - MER30 DNA MER1_type -98 132 1 309 238 163 25 chr9 64561285 64561445 -53301182 - HAL1 LINE L1 -5 2502 2321 2544 193 59 33 chr9 64561541 64562414 -53300213 + L1MB1 LINE L1 5069 5963 -226 506 344 36 13 chr9 64564380 64564604 -53298023 - MIR SINE MIR -13 249 21 296 293 0 12 chr9 64564624 64564706 -53297921 - MIR SINE MIR -94 168 88 182 310 0 35 chr9 64564794 64564852 -53297775 - MIR3 SINE MIR -23 185 130 2242 122 0 0 chr9 64564951 64565254 -53297373 - AluSq SINE Alu -10 303 1 728 218 6 42 chr9 64566008 64566173 -53296454 - MER5B DNA MER1_type -5 173 15 1017 268 13 0 chr9 64566694 64566929 -53295698 - MIR SINE MIR -1 261 24 256 263 0 13 chr9 64567245 64567321 -53295306 - L1M4 LINE L1 -1217 4998 4924 443 266 88 61 chr9 64567498 64568010 -53294617 - L1M4 LINE L1 -1370 4845 4311 2366 87 0 7 chr9 64568010 64568319 -53294308 - AluSq SINE Alu -6 307 1 443 266 88 61 chr9 64568319 64568445 -53294182 - L1M4 LINE L1 -1904 4311 4190 480 228 36 24 chr9 64568481 64568648 -53293979 - L1M4 LINE L1 -2092 4123 3955 23 68 0 0 chr9 64568648 64568692 -53293935 + AT_rich Low_complexity Low_complexity 1 44 0 809 225 55 0 chr9 64568696 64568914 -53293713 - L1ME1 LINE L1 -5 6161 5932 300 308 223 0 chr9 64568909 64569201 -53293426 - L1M4 LINE L1 -2290 3925 3569 * 1191 241 15 3 chr9 64569372 64569712 -53292915 - L1M4 LINE L1 -3302 2913 2570 1846 215 59 49 chr9 64569743 64570593 -53292034 - L1M4 LINE L1 -3968 2428 1540 549 289 35 35 chr9 64570621 64570988 -53291639 - L1M4 LINE L1 -4939 1457 1091 * 2373 266 40 9 chr9 64570987 64571759 -53290868 - L1M4 LINE L1 -5514 882 87 734 184 11 25 chr9 64572863 64573138 -53289489 - L1MA4A LINE L1 -40 6263 5932 495 304 62 45 chr9 64574097 64574164 -53288463 - MIR SINE MIR -1 261 197 1032 171 100 100 chr9 64574164 64574504 -53288123 + MER2 DNA MER2_type 3 342 -2 495 304 62 45 chr9 64574504 64574660 -53287967 - MIR SINE MIR -65 197 34 221 258 0 11 chr9 64575053 64575142 -53287485 + (CATATA)n Simple_repeat Simple_repeat 3 90 0 270 0 0 0 chr9 64575142 64575172 -53287455 + (TG)n Simple_repeat Simple_repeat 1 30 0 21 0 0 0 chr9 64577403 64577424 -53285203 + AT_rich Low_complexity Low_complexity 1 21 0 327 260 183 0 chr9 64577433 64577537 -53285090 + FLAM_C SINE Alu 11 133 0 851 145 0 0 chr9 64577827 64577958 -53284669 - FLAM_C SINE Alu 0 133 3 183 293 0 0 chr9 64579557 64579663 -53282964 + (TA)n Simple_repeat Simple_repeat 2 107 0 229 182 182 11 chr9 64582465 64582553 -53280074 + L1ME4a LINE L1 5961 6063 -58 3868 159 30 39 chr9 64632563 64633563 -53229064 - L1MA9 LINE L1 -463 5849 4869 1968 154 21 24 chr9 64633563 64633939 -53228688 - THE1C LTR MaLR 0 375 1 3868 159 30 39 chr9 64633939 64634325 -53228302 - L1MA9 LINE L1 -1443 4869 4481 1783 177 21 6 chr9 64634426 64634759 -53227868 + MLT1A1 LTR MaLR 1 338 -27 913 181 57 48 chr9 64635532 64635957 -53226670 + MLT1D LTR MaLR 1 477 -28 987 186 0 0 chr9 64635985 64636157 -53226470 - AluJb SINE Alu -5 307 136 2697 84 19 3 chr9 64637228 64637597 -53225030 - THE1C LTR MaLR 0 375 1 201 94 0 0 chr9 64637609 64637641 -53224986 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 1195 278 128 29 chr9 64637657 64638425 -53224202 - L2 LINE L2 -67 3246 2405 578 324 119 20 chr9 64639407 64639735 -53222892 - L1MC/D LINE L1 -743 5403 5170 306 73 0 0 chr9 64639735 64639776 -53222851 + (TG)n Simple_repeat Simple_repeat 2 42 0 578 324 119 20 chr9 64639776 64640003 -53222624 - L1MC/D LINE L1 -976 5170 4967 203 204 74 0 chr9 64640147 64640201 -53222426 - L2 LINE L2 -1 3271 3214 1204 196 0 22 chr9 64643513 64643742 -53218885 - MER58A DNA MER1_type 0 224 1 421 252 47 8 chr9 64644184 64644311 -53218316 - MIR SINE MIR -18 244 113 22 0 0 0 chr9 64646046 64646068 -53216559 + AT_rich Low_complexity Low_complexity 1 22 0 1015 299 6 10 chr9 64646243 64646521 -53216106 - LTR16C LTR ERVL 0 491 213 1586 182 112 34 chr9 64646521 64646863 -53215764 + MLT2D LTR ERVL 1 378 -36 249 33 0 0 chr9 64646863 64646893 -53215734 + (CA)n Simple_repeat Simple_repeat 1 30 0 1586 182 112 34 chr9 64646893 64646934 -53215693 + MLT2D LTR ERVL 378 414 0 1015 299 6 10 chr9 64646934 64646969 -53215658 - LTR16C LTR ERVL -278 213 179 181 351 140 9 chr9 64647610 64647724 -53214903 - L2 LINE L2 -1 3312 3184 336 262 166 0 chr9 64648059 64648204 -53214423 + L1MCa LINE L1 1365 1533 -4893 4058 50 11 0 chr9 64648216 64648757 -53213870 + L1P LINE L1 4 550 -5596 295 200 0 0 chr9 64648857 64648917 -53213710 - L1 LINE L1 -1614 4532 4473 * 1674 179 11 19 chr9 64648912 64649276 -53213351 + L1MA9 LINE L1 5912 6272 -40 41 48 0 0 chr9 64649321 64649383 -53213244 + AT_rich Low_complexity Low_complexity 1 62 0 26 0 0 0 chr9 64649515 64649541 -53213086 + AT_rich Low_complexity Low_complexity 1 26 0 936 301 70 10 chr9 64649862 64650248 -53212379 - L2 LINE L2 -531 2783 2375 1969 86 0 0 chr9 64650302 64650587 -53212040 - AluY SINE Alu 0 323 39 205 253 80 73 chr9 64650758 64650908 -53211719 - L2 LINE L2 -951 2363 2213 2328 131 20 3 chr9 64651054 64651412 -53211215 + THE1B LTR MaLR 1 364 0 397 297 79 36 chr9 64651777 64651942 -53210685 - MER5A DNA MER1_type 0 189 18 1849 171 0 10 chr9 64652287 64652586 -53210041 - AluJb SINE Alu -16 296 1 1100 151 11 11 chr9 64653686 64653865 -53208762 - AluJb SINE Alu -29 283 105 234 125 0 0 chr9 64654436 64654476 -53208151 + MLT1D LTR MaLR 463 502 -3 21 71 0 0 chr9 64654934 64654976 -53207651 + AT_rich Low_complexity Low_complexity 1 42 0 280 194 46 111 chr9 64655056 64655164 -53207463 + L2 LINE L2 3127 3227 -86 318 300 58 92 chr9 64655206 64655307 -53207320 + L2 LINE L2 2622 2725 -589 440 264 110 0 chr9 64655307 64655462 -53207165 - MER96 DNA MER1_type 0 175 4 318 300 58 92 chr9 64655462 64655600 -53207027 + L2 LINE L2 2725 2853 -461 262 218 39 0 chr9 64655607 64655685 -53206942 - L1M4c LINE L1 -4031 2532 2452 767 142 0 0 chr9 64655702 64655836 -53206791 + L1PA16 LINE L1 4881 5014 -1132 * 1862 121 3 0 chr9 64655835 64656125 -53206502 - L1PA14 LINE L1 -251 5910 5620 1389 111 0 0 chr9 64656131 64656329 -53206298 + L1PA14 LINE L1 5955 6152 -9 6111 108 4 0 chr9 64656339 64657490 -53205137 + L1PA16 LINE L1 5002 6156 -10 21 36 0 0 chr9 64657491 64657519 -53205108 + AT_rich Low_complexity Low_complexity 1 28 0 4157 187 31 10 chr9 64657530 64658571 -53204056 - L1MB7 LINE L1 -11 6173 5109 1510 262 108 20 chr9 64658552 64659291 -53203336 - L1M4c LINE L1 -4079 2484 1531 * 35280 34 1 0 chr9 64659314 64664620 -53198007 - L1PA3 LINE L1 0 6155 715 251 269 40 119 chr9 64664914 64665115 -53197512 - MIR SINE MIR -37 225 41 378 0 0 0 chr9 64666476 64666518 -53196109 + (TG)n Simple_repeat Simple_repeat 1 42 0 2611 215 40 11 chr9 64666869 64667222 -53195405 + L1MB7 LINE L1 3943 4284 -1862 2474 128 25 46 chr9 64667222 64667269 -53195358 - MSTA LTR MaLR 0 428 382 2211 116 0 3 chr9 64667269 64667579 -53195048 + AluSx SINE Alu 1 309 -3 2474 128 25 46 chr9 64667579 64667968 -53194659 - MSTA LTR MaLR -46 382 1 2611 215 40 11 chr9 64667968 64668312 -53194315 + L1MB7 LINE L1 4284 4660 -1486 505 274 40 95 chr9 64668312 64668929 -53193698 - MER21B LTR ERV1 -28 577 141 362 242 8 48 chr9 64668972 64669096 -53193531 - MER77 LTR ERV1 -421 184 66 3943 199 39 10 chr9 64669108 64670592 -53192035 + L1MB7 LINE L1 4649 6177 -7 183 419 61 27 chr9 64670856 64671004 -53191623 - L2 LINE L2 -4 3268 3116 467 332 25 10 chr9 64671191 64671390 -53191237 - L2 LINE L2 -560 2754 2553 3221 153 5 4 chr9 64671463 64672017 -53190610 + L1PA16 LINE L1 5612 6166 0 7091 38 1 5 chr9 64672362 64673252 -53189375 + L1PA5 LINE L1 5275 6161 0 268 53 0 26 chr9 64673731 64673769 -53188858 + U1 snRNA snRNA 1 37 -128 2624 36 3 0 chr9 64674238 64674542 -53188085 + AluY SINE Alu 1 305 -6 1904 155 0 10 chr9 64675153 64675450 -53187177 + AluJb SINE Alu 1 294 -18 555 91 40 0 chr9 64675922 64676021 -53186606 + (TAGA)n Simple_repeat Simple_repeat 3 105 0 228 67 0 0 chr9 64677156 64677186 -53185441 + (A)n Simple_repeat Simple_repeat 1 30 0 1237 43 0 32 chr9 64677238 64677424 -53185203 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 220 224 86 52 chr9 64679010 64679068 -53183559 + L2 LINE L2 3235 3294 -19 1171 73 0 7 chr9 64680497 64680680 -53181947 + AluY SINE Alu 134 315 0 417 323 54 40 chr9 64680695 64680918 -53181709 + MIR SINE MIR 21 246 -16 255 31 0 0 chr9 64682023 64682055 -53180572 + (TG)n Simple_repeat Simple_repeat 2 33 0 227 196 20 20 chr9 64682374 64682425 -53180202 + L2 LINE L2 2914 2964 -349 267 261 0 0 chr9 64682682 64682751 -53179876 + GA-rich Low_complexity Low_complexity 4 72 0 952 223 85 8 chr9 64683125 64683430 -53179197 + L1ME1 LINE L1 5800 6164 0 374 260 163 0 chr9 64683630 64683753 -53178874 + MER104 DNA Tc2 4 146 -34 324 175 0 0 chr9 64683912 64683975 -53178652 + A-rich Low_complexity Low_complexity 1 63 0 236 342 60 54 chr9 64685870 64686019 -53176608 - L2 LINE L2 -181 3091 2942 297 0 0 0 chr9 64686075 64686108 -53176519 + (TG)n Simple_repeat Simple_repeat 2 34 0 251 175 186 31 chr9 64687045 64687142 -53175485 - MIR SINE MIR -71 191 80 448 304 37 7 chr9 64687249 64687384 -53175243 + L2 LINE L2 3134 3272 0 187 73 73 0 chr9 64688093 64688134 -53174493 + GA-rich Low_complexity Low_complexity 1 44 0 410 362 65 9 chr9 64688434 64688663 -53173964 - MIR SINE MIR -10 252 11 356 238 19 57 chr9 64689074 64689179 -53173448 + MIR SINE MIR 82 182 -80 2457 136 23 0 chr9 64689239 64689593 -53173034 - THE1B LTR MaLR 0 364 3 290 194 104 0 chr9 64689601 64689668 -53172959 - L2 LINE L2 -3 3310 3237 2298 108 3 0 chr9 64689709 64690014 -53172613 + AluSg SINE Alu 1 306 -4 940 258 163 16 chr9 64690607 64691332 -53171295 + MER45C DNA AcHobo 13 953 0 570 160 8 56 chr9 64691371 64691496 -53171131 - L1MA7 LINE L1 0 6291 6173 224 337 60 0 chr9 64691756 64691839 -53170788 - MIR SINE MIR -115 147 60 200 219 16 31 chr9 64692072 64692136 -53170491 + (TTTAA)n Simple_repeat Simple_repeat 4 66 0 29 28 0 0 chr9 64692254 64692290 -53170337 + AT_rich Low_complexity Low_complexity 1 36 0 249 311 9 19 chr9 64692716 64692822 -53169805 + (TG)n Simple_repeat Simple_repeat 2 106 0 2018 119 14 0 chr9 64692928 64693230 -53169397 + AluJb SINE Alu 1 306 0 648 312 53 33 chr9 64693500 64693837 -53168790 - LTR16C LTR ERVL -59 432 89 494 255 14 28 chr9 64693933 64694078 -53168549 - MIR SINE MIR -107 155 13 2230 118 3 3 chr9 64694151 64694464 -53168163 + AluSq SINE Alu 1 313 0 272 356 80 0 chr9 64695967 64696130 -53166497 - MIR SINE MIR -70 192 17 485 256 0 8 chr9 64696264 64696385 -53166242 + L2 LINE L2 3194 3313 0 5034 100 24 24 chr9 64696472 64697183 -53165444 + L1PA11 LINE L1 5464 6174 0 2555 144 3 3 chr9 64697739 64698101 -53164526 + THE1B LTR MaLR 1 362 -2 567 256 43 18 chr9 64699466 64699630 -53162997 - MLT1K LTR MaLR -2 586 419 384 194 83 125 chr9 64699653 64699797 -53162830 - MER96 DNA MER1_type? -30 145 8 521 234 29 41 chr9 64700015 64700186 -53162441 + MLT1J1 LTR MaLR 1 169 -277 332 250 102 85 chr9 64700230 64700406 -53162221 + MLT1J2 LTR MaLR 261 439 -11 203 246 14 14 chr9 64700740 64700809 -53161818 + CT-rich Low_complexity Low_complexity 5 73 0 23 54 0 0 chr9 64701295 64701332 -53161295 + AT_rich Low_complexity Low_complexity 1 37 0 203 0 37 0 chr9 64701735 64701762 -53160865 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 22 0 0 0 chr9 64703610 64703632 -53158995 + AT_rich Low_complexity Low_complexity 1 22 0 218 288 15 0 chr9 64703927 64703993 -53158634 + GA-rich Low_complexity Low_complexity 3 69 0 1375 182 32 37 chr9 64704216 64704592 -53158035 + MLT1D LTR MaLR 42 505 0 1019 264 184 23 chr9 64705017 64705452 -53157175 + MLT1D LTR MaLR 1 505 0 193 333 20 0 chr9 64707062 64707113 -53155514 - MIR3 SINE MIR -25 183 132 852 154 0 0 chr9 64708465 64708601 -53154026 - AluJb SINE Alu 0 312 177 343 70 0 0 chr9 64709694 64709737 -53152890 - MLT2B3 LTR ERVL 0 554 512 304 153 14 14 chr9 64709740 64709812 -53152815 + (TAGA)n Simple_repeat Simple_repeat 2 73 0 1864 190 175 34 chr9 64709812 64710280 -53152347 - MLT2B3 LTR ERVL -20 534 1 563 326 158 18 chr9 64710646 64710925 -53151702 + L2 LINE L2 2391 2708 -606 2121 178 20 33 chr9 64710992 64711442 -53151185 + L1MB7 LINE L1 5731 6174 -10 496 275 144 6 chr9 64711452 64711584 -53151043 + MER5A DNA MER1_type 6 165 -24 6102 98 51 2 chr9 64711584 64712913 -53149714 - L1PA13 LINE L1 -1 6162 4791 496 275 144 6 chr9 64712913 64712940 -53149687 + MER5A DNA MER1_type 165 187 -2 464 318 104 15 chr9 64712946 64713385 -53149242 + L2 LINE L2 2766 3305 -8 2664 205 10 42 chr9 64714902 64715521 -53147106 - L1MA10 LINE L1 -1 6333 5735 1813 129 54 7 chr9 64715643 64715938 -53146689 - AluSg SINE Alu -1 309 1 300 343 28 0 chr9 64716063 64716171 -53146456 - MIR SINE MIR -76 132 22 594 312 87 19 chr9 64716180 64716549 -53146078 - MLT2F LTR ERVL -267 396 3 2471 69 41 0 chr9 64716893 64717210 -53145417 + L1PA11 LINE L1 5839 6168 -6 211 132 26 0 chr9 64717220 64717258 -53145369 + (TATG)n Simple_repeat Simple_repeat 2 40 0 207 155 71 0 chr9 64717264 64717348 -53145279 + (TCTA)n Simple_repeat Simple_repeat 1 90 0 207 210 0 48 chr9 64717770 64717832 -53144795 + A-rich Low_complexity Low_complexity 2 60 0 304 279 124 19 chr9 64717996 64718157 -53144470 + MIR SINE MIR 20 197 -65 414 226 105 16 chr9 64718470 64718594 -53144033 + LTR37A LTR ERV1 26 160 -266 323 207 0 0 chr9 64718602 64718660 -53143967 + MER82 DNA MER2_type 10 67 -586 1175 130 0 16 chr9 64718705 64718889 -53143738 - AluSg/x SINE Alu -10 302 122 32 75 0 0 chr9 64719315 64719382 -53143245 + AT_rich Low_complexity Low_complexity 1 67 0 2238 77 28 0 chr9 64719601 64719888 -53142739 - AluSg SINE Alu -15 295 1 1339 149 9 20 chr9 64720929 64720997 -53141630 - MSTB1 LTR MaLR 0 432 365 2164 125 3 7 chr9 64720997 64721300 -53141327 + AluSg SINE Alu 1 302 -8 1339 149 9 20 chr9 64721300 64721568 -53141059 - MSTB1 LTR MaLR -67 365 1 2328 87 7 0 chr9 64721955 64722254 -53140373 - AluY SINE Alu -8 303 3 1369 148 48 44 chr9 64722263 64722533 -53140094 - MER33 DNA MER1_type -44 280 10 246 308 65 37 chr9 64723278 64723385 -53139242 + L2 LINE L2 3139 3248 -24 273 222 14 69 chr9 64723539 64723611 -53139016 - L2 LINE L2 -5 3267 3200 318 206 0 0 chr9 64723891 64723964 -53138663 + GA-rich Low_complexity Low_complexity 3 75 0 300 346 18 39 chr9 64724655 64724786 -53137841 + MIR SINE MIR 20 149 -59 186 143 0 0 chr9 64724802 64724837 -53137790 + (GA)n Simple_repeat Simple_repeat 1 35 0 580 208 101 18 chr9 64725879 64726153 -53136474 - LTR16C LTR ERVL -4 487 161 303 28 0 0 chr9 64727405 64727441 -53135186 + (GA)n Simple_repeat Simple_repeat 2 37 0 202 204 222 65 chr9 64728416 64728524 -53134103 - L3 LINE CR1 -12 1565 1441 228 300 67 40 chr9 64728621 64728771 -53133856 + L2 LINE L2 3133 3286 -27 571 283 64 55 chr9 64729135 64729478 -53133149 - MER93a LTR ERV1 -56 346 1 400 322 95 20 chr9 64730623 64730971 -53131656 - MLT1J LTR MaLR -133 378 5 1117 269 69 47 chr9 64731092 64731712 -53130915 - L1M4 LINE L1 -2044 4102 3469 244 254 167 9 chr9 64731754 64731868 -53130759 - L1M4 LINE L1 -3126 3020 2889 241 241 0 0 chr9 64731896 64731954 -53130673 - L1MC4 LINE L1 -1337 6705 6648 1071 182 17 0 chr9 64731978 64732159 -53130468 + MLT1D LTR MaLR 321 504 -1 279 296 69 42 chr9 64732160 64732592 -53130035 - L1M4 LINE L1 -3253 2893 2450 328 336 38 15 chr9 64733080 64733211 -53129416 - MIR SINE MIR -108 154 21 301 253 22 22 chr9 64734752 64734843 -53127784 - MER103 DNA DNA -21 145 55 1318 237 122 43 chr9 64735058 64735526 -53127101 + MLT1D LTR MaLR 1 505 0 263 307 112 17 chr9 64735678 64735857 -53126770 + MIR3 SINE MIR 3 198 -10 1799 121 3 78 chr9 64735897 64736267 -53126360 - AluSx SINE Alu 0 348 2 1907 131 22 29 chr9 64736783 64737095 -53125532 + AluJb SINE Alu 1 310 -2 260 346 45 39 chr9 64737635 64737791 -53124836 + MIR3 SINE MIR 10 166 -42 2347 92 3 0 chr9 64737876 64738168 -53124459 + AluSx SINE Alu 1 293 -19 210 301 140 0 chr9 64738756 64738849 -53123778 - MIR3 SINE MIR -25 183 78 429 250 19 9 chr9 64739107 64739215 -53123412 + MER5A DNA MER1_type 4 112 -77 905 190 0 0 chr9 64739691 64739849 -53122778 + FRAM SINE Alu 1 156 -20 563 250 10 65 chr9 64742311 64742511 -53120116 - L1ME3 LINE L1 0 6162 5974 27 29 0 0 chr9 64742710 64742744 -53119883 + AT_rich Low_complexity Low_complexity 1 34 0 1727 253 38 76 chr9 64742758 64743296 -53119331 + L2 LINE L2 350 858 -2456 2337 86 7 3 chr9 64743296 64743598 -53119029 - AluSq SINE Alu -10 303 1 1727 253 38 76 chr9 64743598 64743744 -53118883 + L2 LINE L2 858 1008 -2306 453 286 42 6 chr9 64743744 64743912 -53118715 + L2 LINE L2 1718 1891 -1423 714 148 0 0 chr9 64743924 64744082 -53118545 - AluSg/x SINE Alu 0 331 174 278 269 39 29 chr9 64744097 64744201 -53118426 + L2 LINE L2 1945 2049 -1265 952 203 0 11 chr9 64744225 64744412 -53118215 - AluJo SINE Alu -1 311 127 1194 249 115 134 chr9 64744412 64745379 -53117248 + L2 LINE L2 2094 3041 -272 741 159 28 28 chr9 64745379 64745524 -53117103 + L1MA8 LINE L1 6146 6290 -1 1194 249 115 134 chr9 64745524 64745792 -53116835 + L2 LINE L2 3041 3313 0 258 282 0 0 chr9 64746681 64746752 -53115875 - L1M LINE L1 -742 5420 5350 557 280 52 61 chr9 64746771 64747114 -53115513 + L2 LINE L2 2941 3280 -33 212 266 25 51 chr9 64747126 64747191 -53115436 + MIR3 SINE MIR 94 156 -52 753 214 39 6 chr9 64747191 64747369 -53115258 + MER5A DNA MER1_type 1 184 -5 451 315 61 5 chr9 64747657 64747854 -53114773 - L1ME LINE L1 -588 5574 5367 632 343 57 4 chr9 64748297 64748545 -53114082 - MIR SINE MIR 0 262 2 196 341 66 22 chr9 64748594 64748685 -53113942 - L2 LINE L2 -183 3089 2995 780 134 39 95 chr9 64749091 64749270 -53113357 + MER30 DNA MER1_type 62 230 0 7047 170 40 13 chr9 64749305 64750420 -53112207 + L1MA4A LINE L1 4005 5176 -1124 2816 16 0 0 chr9 64750420 64750727 -53111900 + AluYa8 SINE Alu 1 307 -3 7047 170 40 13 chr9 64750727 64751158 -53111469 + L1MA4A LINE L1 5176 5594 -706 7214 74 10 2 chr9 64751160 64752372 -53110255 + L1PA8 LINE L1 4950 6168 -4 4329 151 29 4 chr9 64752372 64752795 -53109832 + L1MA4A LINE L1 5570 6020 -283 441 0 0 0 chr9 64752795 64752844 -53109783 + (TG)n Simple_repeat Simple_repeat 2 50 0 4329 151 29 4 chr9 64752844 64753134 -53109493 + L1MA4A LINE L1 6020 6301 -2 2373 178 48 53 chr9 64754254 64754759 -53107868 + MLT1D LTR MaLR 4 505 0 957 204 15 31 chr9 64755133 64755329 -53107298 + MER3 DNA MER1_type 13 205 -4 22 0 0 0 chr9 64755452 64755474 -53107153 + AT_rich Low_complexity Low_complexity 1 22 0 859 249 60 46 chr9 64759580 64759959 -53102668 - LTR16C LTR ERVL -8 483 32 302 335 135 24 chr9 64760017 64760187 -53102440 - L3 LINE CR1 -5 1572 1384 2509 87 0 0 chr9 64760715 64761025 -53101602 + AluSx SINE Alu 1 310 -2 481 332 5 48 chr9 64761588 64761796 -53100831 + Charlie8 DNA MER1_type 2 200 -2217 1047 111 6 17 chr9 64762811 64762992 -53099635 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 415 319 112 58 chr9 64763495 64763755 -53098872 - L2 LINE L2 -31 3241 2968 354 262 58 36 chr9 64763820 64764045 -53098582 + L1M4c LINE L1 1125 1354 -5030 1219 220 23 33 chr9 64764062 64764366 -53098261 + L1ME1 LINE L1 5736 6036 -130 31 82 0 0 chr9 64764663 64764736 -53097891 + AT_rich Low_complexity Low_complexity 1 73 0 369 0 0 0 chr9 64764750 64764791 -53097836 + (CA)n Simple_repeat Simple_repeat 2 42 0 311 307 101 66 chr9 64765644 64765872 -53096755 - L1MC4a LINE L1 -1871 5937 5702 1824 158 20 7 chr9 64767751 64768054 -53094573 + MLT1A1 LTR MaLR 58 364 -1 181 311 16 33 chr9 64769407 64769468 -53093159 + L2 LINE L2 3138 3197 -75 234 0 0 0 chr9 64770991 64771017 -53091610 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1973 137 0 10 chr9 64771019 64771311 -53091316 - AluSx SINE Alu -23 289 1 23 86 0 0 chr9 64771439 64771497 -53091130 + AT_rich Low_complexity Low_complexity 1 58 0 556 254 86 25 chr9 64771717 64771914 -53090713 - MIR SINE MIR -16 246 38 239 159 45 0 chr9 64772054 64772098 -53090529 - MLT2F LTR ERVL 0 663 618 214 233 0 0 chr9 64772108 64772164 -53090463 + (CA)n Simple_repeat Simple_repeat 1 56 0 1154 158 260 8 chr9 64772187 64772452 -53090175 - MLT2F LTR ERVL -60 603 272 883 162 39 13 chr9 64772488 64772642 -53089985 - MLT2F LTR ERVL -505 158 1 225 241 175 89 chr9 64772792 64773049 -53089578 - L2 LINE L2 -168 3104 2826 861 275 126 47 chr9 64773229 64773698 -53088929 + MLT1H1 LTR MaLR 44 549 -6 310 382 76 28 chr9 64773775 64774095 -53088532 - L2 LINE L2 -646 2668 2324 2962 177 11 23 chr9 64774095 64774620 -53088007 + MLT2B1 LTR ERVL 2 520 0 310 382 76 28 chr9 64774620 64774694 -53087933 - L2 LINE L2 -990 2324 2255 264 239 313 18 chr9 64774803 64774966 -53087661 + MIR SINE MIR 44 254 -8 210 336 133 40 chr9 64775139 64775365 -53087262 - L2 LINE L2 -1371 1943 1697 486 279 35 112 chr9 64776076 64776388 -53086239 + L1MDa LINE L1 35 322 -6218 1650 242 36 15 chr9 64776711 64777207 -53085420 + L1MDa LINE L1 846 1363 -5180 880 183 100 13 chr9 64777215 64777444 -53085183 + L1MC4a LINE L1 5297 5545 -2263 736 273 28 16 chr9 64777461 64777710 -53084917 + L1MC4a LINE L1 5594 5845 -1963 2490 106 135 8 chr9 64779567 64779946 -53082681 - MSTA LTR MaLR 0 428 2 304 280 0 0 chr9 64779973 64780066 -53082561 + (TA)n Simple_repeat Simple_repeat 1 93 0 599 309 72 4 chr9 64780078 64780406 -53082221 - L1MC4a LINE L1 -318 5803 5576 833 236 39 0 chr9 64780441 64780619 -53082008 - MIR SINE MIR -62 200 16 1059 229 98 33 chr9 64780651 64781088 -53081539 - Charlie7 DNA MER1_type -105 2507 2033 1381 185 82 46 chr9 64781088 64781369 -53081258 + AluJo SINE Alu 1 291 -21 1059 229 98 33 chr9 64781369 64781420 -53081207 - Charlie7 DNA MER1_type -579 2033 1987 366 283 43 21 chr9 64781475 64781619 -53081008 + MLT1H1 LTR MaLR 34 176 -366 240 108 0 0 chr9 64781623 64781660 -53080967 - MLT2C1 LTR ERVL -7 390 354 1042 158 27 0 chr9 64781661 64781845 -53080782 + MER2 DNA MER2_type 1 189 -156 356 260 162 14 chr9 64781972 64782138 -53080489 + MLT1H LTR MaLR 373 567 0 439 254 51 35 chr9 64782145 64782342 -53080285 - Charlie7 DNA MER1_type -630 1982 1783 4752 88 4 19 chr9 64782366 64782745 -53079882 - L1PB1 LINE L1 -3 6148 5782 328 69 0 35 chr9 64782745 64782803 -53079824 + (TA)n Simple_repeat Simple_repeat 2 57 0 4752 88 4 19 chr9 64782803 64783118 -53079509 - L1PB1 LINE L1 -369 5782 5464 530 91 23 0 chr9 64783119 64783207 -53079420 + L1P LINE L1 5338 5427 -724 421 200 36 9 chr9 64783215 64783325 -53079302 - Charlie7 DNA MER1_type -841 1771 1659 2800 209 90 25 chr9 64783356 64784146 -53078481 - L1MC4 LINE L1 -34 8008 7168 232 275 12 0 chr9 64784173 64784253 -53078374 - Charlie7 DNA MER1_type -980 1632 1552 1844 265 71 38 chr9 64784255 64784955 -53077672 - Charlie7 DNA MER1_type -1364 1248 496 2936 197 76 7 chr9 64784955 64785563 -53077064 + MER82 DNA MER2_type 2 651 -2 1844 265 71 38 chr9 64785563 64785990 -53076637 - Charlie7 DNA MER1_type -2116 496 84 5051 257 70 23 chr9 64786095 64788066 -53074561 + L1MEc LINE L1 55 2117 -4279 2359 84 0 0 chr9 64788132 64788429 -53074198 - AluY SINE Alu -14 297 1 1229 219 84 14 chr9 64788596 64788893 -53073734 - MER74B LTR ERVL -250 372 55 2341 236 69 33 chr9 64788893 64789091 -53073536 + L1MEc LINE L1 2115 2304 -3911 2555 56 0 0 chr9 64789091 64789394 -53073233 + AluY SINE Alu 1 303 -8 2341 236 69 33 chr9 64789394 64790297 -53072330 + L1MEc LINE L1 2304 3226 -2989 1728 235 129 12 chr9 64790269 64790938 -53071689 + L1MEc LINE L1 3732 4478 -1737 * 695 222 0 0 chr9 64790942 64791059 -53071568 + FLAM_A SINE Alu 1 117 -16 383 190 9 26 chr9 64791060 64791176 -53071451 + (TA)n Simple_repeat Simple_repeat 1 114 0 488 319 24 0 chr9 64791412 64791581 -53071046 - MIR SINE MIR 0 262 90 2652 163 18 0 chr9 64791611 64792058 -53070569 - MSTB2 LTR MaLR -2 455 1 319 230 133 0 chr9 64793162 64793275 -53069352 - L1ME4a LINE L1 -44 6077 5950 233 163 23 0 chr9 64793375 64793418 -53069209 + MLT1B LTR MaLR 1 44 -346 1968 171 97 5 chr9 64793958 64794350 -53068277 + MSTA LTR MaLR 1 428 0 220 167 42 0 chr9 64794557 64794605 -53068022 + GA-rich Low_complexity Low_complexity 1 50 0 1156 206 52 35 chr9 64794688 64794974 -53067653 - MLT1A2 LTR MaLR -37 337 47 2320 116 0 0 chr9 64796694 64797005 -53065622 - AluSx SINE Alu -1 311 1 268 128 64 0 chr9 64797284 64797362 -53065265 + (CA)n Simple_repeat Simple_repeat 2 84 0 1114 160 0 76 chr9 64798734 64798972 -53063655 + L1MB2 LINE L1 5425 5644 -539 723 191 23 35 chr9 64798972 64799174 -53063453 + MER6 DNA MER2_type -65 865 0 1664 165 3 0 chr9 64799174 64799471 -53063156 + L1MB2 LINE L1 5643 5940 -231 500 189 24 2 chr9 64799487 64799617 -53063010 - L1MB3 LINE L1 -251 5913 5783 322 165 25 0 chr9 64799638 64799717 -53062910 + (TA)n Simple_repeat Simple_repeat 2 82 0 571 243 18 0 chr9 64800240 64800409 -53062218 + L1MD3 LINE L1 7824 7995 0 231 197 14 28 chr9 64800481 64800552 -53062075 + L1ME3A LINE L1 1465 1534 -5325 280 255 163 44 chr9 64800582 64800894 -53061733 + L1ME3A LINE L1 1616 2014 -4887 673 272 133 7 chr9 64800925 64801226 -53061401 + L1ME3A LINE L1 6188 6526 -455 1024 227 84 16 chr9 64801320 64801641 -53060986 + MER2 DNA MER2_type 1 343 -1 582 216 15 8 chr9 64801711 64801845 -53060782 + L1ME3A LINE L1 6842 6976 -5 21 36 0 0 chr9 64802157 64802185 -53060442 + AT_rich Low_complexity Low_complexity 1 28 0 655 265 61 59 chr9 64802185 64802642 -53059985 - HAL1 LINE L1 -5 2502 2045 318 294 76 25 chr9 64802721 64802840 -53059787 - HAL1 LINE L1 -2123 384 260 236 143 57 0 chr9 64803745 64803815 -53058812 + (TATG)n Simple_repeat Simple_repeat 4 77 0 1619 198 67 15 chr9 64804534 64804980 -53057647 + MLT2B1 LTR ERVL 1 514 -1 1102 205 64 58 chr9 64804982 64805513 -53057114 - L1MC5 LINE L1 -102 7859 7326 624 237 17 23 chr9 64806478 64806655 -53055972 + MER5B DNA MER1_type 1 176 -2 2234 110 0 3 chr9 64807436 64807737 -53054890 + AluY SINE Alu 1 300 -11 2195 113 7 3 chr9 64807870 64808172 -53054455 + AluSp SINE Alu 3 305 -8 2325 100 0 0 chr9 64808911 64809210 -53053417 + AluSq SINE Alu 4 302 -11 333 301 77 27 chr9 64809236 64809419 -53053208 - L1M4 LINE L1 -724 5450 5259 227 250 68 106 chr9 64809425 64809557 -53053070 - MIR SINE MIR -63 145 19 742 345 44 51 chr9 64809653 64810118 -53052509 - L2 LINE L2 -10 3262 2797 257 227 0 15 chr9 64810724 64810790 -53051837 + GA-rich Low_complexity Low_complexity 2 66 0 320 280 116 67 chr9 64810887 64811233 -53051394 + MLT1I LTR MaLR 47 409 0 201 338 0 27 chr9 64812773 64812847 -53049780 - L2 LINE L2 -8 3305 3234 963 214 24 108 chr9 64813157 64813611 -53049016 - LTR37B LTR ERV1 0 468 53 511 324 22 22 chr9 64813670 64813855 -53048772 + MIR SINE MIR 50 234 -28 241 370 61 32 chr9 64814308 64814554 -53048073 - L2 LINE L2 -873 2441 2189 696 304 97 16 chr9 64814986 64815368 -53047259 - LTR16C LTR ERVL 0 491 79 214 215 0 92 chr9 64815431 64815496 -53047131 + MIR SINE MIR 16 74 -188 195 273 45 0 chr9 64815625 64815669 -53046958 - L2 LINE L2 -17 3255 3210 474 307 12 6 chr9 64816210 64816373 -53046254 + LTR33 LTR ERVL 354 517 -4 374 292 43 31 chr9 64816573 64816734 -53045893 - L2 LINE L2 -20 3293 3131 1379 174 45 21 chr9 64817897 64818230 -53044397 - Charlie1 DNA MER1_type -4 2757 2417 2034 139 3 9 chr9 64818440 64818779 -53043848 + L1PB1 LINE L1 5812 6148 -3 2412 95 0 0 chr9 64820043 64820347 -53042280 + AluSx SINE Alu 1 304 -8 358 346 117 33 chr9 64820777 64821381 -53041246 + L2 LINE L2 2657 3313 0 295 229 93 29 chr9 64823609 64823749 -53038878 + L1ME4a LINE L1 5836 5984 -137 286 238 16 0 chr9 64824286 64824349 -53038278 + MIR SINE MIR 89 152 -110 189 147 0 0 chr9 64824854 64824888 -53037739 + (TATG)n Simple_repeat Simple_repeat 1 34 0 465 280 108 69 chr9 64825145 64825478 -53037149 + L1ME4a LINE L1 5684 6038 -83 2314 4 0 0 chr9 64825478 64825760 -53036867 - AluYa5 SINE Alu 0 315 34 465 280 108 69 chr9 64825760 64825832 -53036795 + L1ME4a LINE L1 6038 6106 -15 515 180 48 9 chr9 64827553 64827833 -53034794 + MLT1C LTR MaLR 6 437 -30 2716 20 23 26 chr9 64827870 64828213 -53034414 - L1PA4 LINE L1 0 6155 5814 5560 31 0 0 chr9 64828213 64828858 -53033769 - L1PA4 LINE L1 0 6155 5505 335 278 142 53 chr9 64829628 64829909 -53032718 + L1MEd LINE L1 38 343 -5776 746 50 0 10 chr9 64830963 64831063 -53031564 + (GAAA)n Simple_repeat Simple_repeat 2 100 0 479 293 53 0 chr9 64831288 64831438 -53031189 + MIR SINE MIR 47 204 -58 362 284 147 17 chr9 64831957 64832073 -53030554 - MIR SINE MIR -62 146 16 2201 126 3 0 chr9 64832199 64832508 -53030119 + AluSg SINE Alu 1 310 0 3735 190 41 45 chr9 64832573 64833357 -53029270 + LTR39 LTR ERV1 3 783 0 733 302 79 23 chr9 64834756 64835147 -53027480 + LTR33 LTR ERVL 107 519 -2 234 325 148 12 chr9 64835378 64835547 -53027080 - MIR SINE MIR -7 255 64 211 311 94 19 chr9 64835879 64835985 -53026642 - MER5A DNA MER1_type -70 119 6 184 296 141 14 chr9 64836410 64836481 -53026146 - L2 LINE L2 -18 3295 3216 1370 178 60 0 chr9 64836482 64836751 -53025876 + L1MB3 LINE L1 5899 6183 0 1367 126 60 0 chr9 64837858 64838057 -53024570 - L1PA15 LINE L1 -9 6156 5946 2129 188 61 42 chr9 64838963 64839202 -53023425 - MLT1C LTR MaLR 0 467 234 1673 173 0 0 chr9 64839202 64839473 -53023154 + AluJb SINE Alu 6 276 -36 2129 188 61 42 chr9 64839473 64839691 -53022936 - MLT1C LTR MaLR -233 234 1 1548 262 43 35 chr9 64840119 64840630 -53021997 + MER20B DNA MER1_type 268 782 -1 180 334 192 35 chr9 64840647 64840964 -53021663 - L2 LINE L2 -702 2612 2246 2085 142 0 22 chr9 64842393 64842711 -53019916 + AluSq SINE Alu 3 313 0 323 247 155 0 chr9 64843184 64843281 -53019346 + MIR3 SINE MIR 81 192 -16 2440 181 31 5 chr9 64843599 64844014 -53018613 - MSTB LTR MaLR 0 426 1 862 295 94 48 chr9 64844508 64845138 -53017489 - L1MC4a LINE L1 -308 5813 5265 1882 161 27 18 chr9 64845318 64845653 -53016974 + MER44D DNA MER2_type 1 608 -1 557 274 45 20 chr9 64845788 64846033 -53016594 + L1M4 LINE L1 2254 2504 -3642 2632 118 46 24 chr9 64846033 64846449 -53016178 + MSTA LTR MaLR 4 428 0 667 207 88 53 chr9 64849062 64849270 -53013357 - MER106A DNA MER1_type -1 235 17 2823 150 17 5 chr9 64849270 64849691 -53012936 + MSTB LTR MaLR 1 426 0 667 207 88 53 chr9 64849691 64849709 -53012918 - MER106A DNA MER1_type -219 17 1 1870 134 32 0 chr9 64850467 64850628 -53011999 - AluSp SINE Alu -21 292 117 222 37 0 0 chr9 64850628 64850655 -53011972 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1870 134 32 0 chr9 64850655 64850776 -53011851 - AluSp SINE Alu -196 117 1 280 350 103 16 chr9 64850846 64851215 -53011412 + L2 LINE L2 2024 2424 -890 1169 114 10 45 chr9 64852183 64852384 -53010243 + AluSg/x SINE Alu 118 311 -1 366 23 0 0 chr9 64852691 64852734 -53009893 + (TG)n Simple_repeat Simple_repeat 2 44 0 2498 71 3 0 chr9 64853776 64854073 -53008554 - AluSx SINE Alu -9 303 6 2241 128 0 0 chr9 64854570 64854882 -53007745 + AluSx SINE Alu 1 312 0 23 0 0 0 chr9 64855061 64855084 -53007543 + AT_rich Low_complexity Low_complexity 1 23 0 1208 252 44 25 chr9 64855253 64855621 -53007006 + L1MB7 LINE L1 5839 6153 -31 487 204 33 40 chr9 64855919 64856071 -53006556 - L1MC4 LINE L1 0 8042 7892 416 315 39 3 chr9 64857603 64857805 -53004822 + MIR SINE MIR 2 262 0 275 356 86 43 chr9 64857969 64858116 -53004511 + L2 LINE L2 2638 2777 -537 2235 116 0 0 chr9 64858116 64858419 -53004208 + AluSx SINE Alu 3 305 -7 275 356 86 43 chr9 64858419 64858597 -53004030 + L2 LINE L2 2777 2977 -337 479 152 25 0 chr9 64858729 64858808 -53003819 - AluSc SINE Alu -75 234 154 1772 93 0 0 chr9 64859098 64859335 -53003292 + AluY SINE Alu 73 309 -2 248 232 0 0 chr9 64859338 64859417 -53003210 - L1MEd LINE L1 -3952 2898 2820 498 244 161 54 chr9 64859558 64859763 -53002864 + MLT1I LTR MaLR 183 409 0 2208 234 44 21 chr9 64860244 64860901 -53001726 - L1M4 LINE L1 -2164 3982 3311 262 263 26 109 chr9 64861173 64861329 -53001298 - L1MEd LINE L1 -5957 881 739 299 341 114 0 chr9 64861463 64861595 -53001032 + L1ME LINE L1 5608 5754 -416 192 40 0 0 chr9 64862018 64862043 -53000584 + (TC)n Simple_repeat Simple_repeat 1 25 0 267 250 16 0 chr9 64863673 64863737 -52998890 + MLT1J1 LTR MaLR 378 442 -4 2306 102 3 0 chr9 64863940 64864244 -52998383 + AluSp SINE Alu 1 305 -8 290 294 22 11 chr9 64864436 64864528 -52998099 + MLT1L LTR MaLR 442 534 -81 263 231 165 22 chr9 64864532 64864623 -52998004 + MER112 DNA MER1_type 149 252 -8 24 0 0 0 chr9 64865217 64865241 -52997386 + AT_rich Low_complexity Low_complexity 1 24 0 229 300 78 54 chr9 64865394 64865680 -52996947 + L3 LINE CR1 1145 1498 -79 911 301 94 22 chr9 64866023 64866425 -52996202 - MLT1J2 LTR MaLR -19 431 1 1705 190 0 3 chr9 64867187 64867477 -52995150 - AluJo SINE Alu -23 289 1 2132 139 0 0 chr9 64868622 64868924 -52993703 + AluSx SINE Alu 1 302 -10 1881 148 0 33 chr9 64869377 64869680 -52992947 + AluSx SINE Alu 1 293 -19 367 299 0 0 chr9 64870105 64870182 -52992445 + MIR SINE MIR 31 107 -155 351 230 130 0 chr9 64870259 64870359 -52992268 + MIR SINE MIR 104 216 -46 2316 100 0 7 chr9 64870451 64870760 -52991867 + AluY SINE Alu 1 307 -4 967 265 159 31 chr9 64870771 64871040 -52991587 + MLT1H1 LTR MaLR 17 250 -305 2159 138 47 6 chr9 64871040 64871381 -52991246 - THE1A LTR MaLR 0 355 1 967 265 159 31 chr9 64871381 64871625 -52991002 + MLT1H1 LTR MaLR 250 555 0 365 335 40 20 chr9 64872216 64872368 -52990259 + L2 LINE L2 3117 3271 -1 813 260 24 16 chr9 64872524 64872770 -52989857 - MIR SINE MIR 0 262 15 572 273 23 23 chr9 64874217 64874393 -52988234 + MIR SINE MIR 32 207 -55 184 212 0 0 chr9 64874662 64874695 -52987932 + L2 LINE L2 3226 3258 -14 453 19 0 0 chr9 64874699 64874753 -52987874 + (TGAA)n Simple_repeat Simple_repeat 4 57 0 607 277 112 69 chr9 64875323 64875512 -52987115 + MLT1K LTR MaLR 112 292 -296 1802 132 0 0 chr9 64875512 64875763 -52986864 - AluSx SINE Alu -41 271 21 607 277 112 69 chr9 64875763 64876021 -52986606 + MLT1K LTR MaLR 292 578 -10 326 353 76 59 chr9 64876609 64876963 -52985664 - L2 LINE L2 -17 3255 2896 189 0 0 0 chr9 64878379 64878400 -52984227 + (A)n Simple_repeat Simple_repeat 1 21 0 299 250 24 0 chr9 64878491 64878575 -52984052 + MIR3 SINE MIR 114 199 -9 3348 133 52 31 chr9 64879140 64879195 -52983432 - L1MA8 LINE L1 -4 6287 6235 1646 166 3 23 chr9 64879195 64879503 -52983124 + AluJb SINE Alu 1 302 -10 3348 133 52 31 chr9 64879503 64880063 -52982564 - L1MA8 LINE L1 -56 6235 5659 5737 62 4 3 chr9 64880063 64880816 -52981811 + L1PA10 LINE L1 5427 6180 0 2192 24 36 0 chr9 64881649 64881896 -52980731 + L1PA4 LINE L1 5900 6155 0 1802 32 32 0 chr9 64881680 64881898 -52980729 + L1PA4 LINE L1 5931 6155 0 2337 107 0 0 chr9 64882287 64882597 -52980030 - AluSx SINE Alu -2 310 1 2382 94 13 0 chr9 64882606 64882905 -52979722 - AluSg SINE Alu -7 303 1 265 256 25 41 chr9 64884036 64884157 -52978470 + LTR67 LTR ERVL 439 557 0 1064 259 25 47 chr9 64884229 64884367 -52978260 + MLT1I LTR MaLR 100 240 -169 688 311 57 0 chr9 64884367 64884576 -52978051 - MER58A DNA MER1_type 0 224 4 1064 259 25 47 chr9 64884576 64884754 -52977873 + MLT1I LTR MaLR 240 409 0 270 376 16 16 chr9 64884976 64885101 -52977526 + MIR SINE MIR 24 148 -60 2061 110 3 0 chr9 64886437 64886742 -52975885 - AluSx SINE Alu 0 306 1 388 278 77 35 chr9 64887077 64887246 -52975381 - MIR SINE MIR 0 262 87 413 293 7 54 chr9 64888761 64888908 -52973719 + MIR SINE MIR 13 152 -110 353 226 204 0 chr9 64889283 64889376 -52973251 - MER81 DNA DNA 0 114 3 407 85 0 0 chr9 64890504 64890563 -52972064 + L1PA14 LINE L1 5923 5981 -180 289 123 0 77 chr9 64890680 64890745 -52971882 - AluSc SINE Alu 0 299 240 1234 125 0 0 chr9 64890755 64890931 -52971696 + L1PA14 LINE L1 5986 6161 0 3128 197 27 14 chr9 64890939 64891563 -52971064 + L1MB3 LINE L1 5552 6183 0 252 86 0 0 chr9 64891696 64891731 -52970896 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1503 94 172 8 chr9 64891736 64891980 -52970647 - AluSx SINE Alu -28 284 1 191 218 186 81 chr9 64892733 64892857 -52969770 - MIR3 SINE MIR -2 206 70 286 283 164 26 chr9 64893061 64893372 -52969255 - L2 LINE L2 -27 3286 2933 474 188 0 45 chr9 64893387 64893499 -52969128 + L1MB8 LINE L1 6072 6178 0 2289 101 3 0 chr9 64893871 64894167 -52968460 + AluSx SINE Alu 1 297 -15 2202 188 12 37 chr9 64896160 64896591 -52966036 + MSTB LTR MaLR 1 420 -6 376 229 42 0 chr9 64896648 64896744 -52965883 + MER94 DNA DNA 1 100 -34 1786 217 96 32 chr9 64898953 64899424 -52963203 + MLT1D LTR MaLR 1 501 -4 1725 142 100 4 chr9 64899648 64899929 -52962698 - AluJb SINE Alu -4 308 1 376 225 16 11 chr9 64900057 64900150 -52962477 + MIR SINE MIR 75 167 -62 300 308 132 22 chr9 64900938 64901120 -52961507 + MIR3 SINE MIR 4 205 -3 388 282 81 74 chr9 64901276 64901560 -52961067 + L2 LINE L2 3028 3313 0 633 319 47 74 chr9 64901579 64902213 -52960414 + L2 LINE L2 2646 3272 0 2364 82 7 3 chr9 64902646 64902949 -52959678 - AluY SINE Alu -7 304 1 221 228 158 20 chr9 64903630 64903731 -52958896 + MIR SINE MIR 31 145 -117 307 216 26 44 chr9 64903796 64903917 -52958710 + MIR SINE MIR 45 159 -60 272 258 16 0 chr9 64904878 64904940 -52957687 + L2 LINE L2 3251 3313 0 204 326 0 0 chr9 64905045 64905094 -52957533 - MIR SINE MIR -59 149 101 668 276 109 60 chr9 64905422 64905907 -52956720 - MLT1J LTR MaLR -2 509 1 727 211 0 0 chr9 64906156 64906270 -52956357 + FLAM_A SINE Alu 1 114 -19 1045 156 12 0 chr9 64906845 64907012 -52955615 - FRAM SINE Alu -8 168 1 2160 123 3 0 chr9 64907431 64907731 -52954896 - AluSx SINE Alu -11 301 1 1579 17 0 0 chr9 64909061 64909234 -52953393 - AluYa5 SINE Alu -6 305 133 242 239 0 60 chr9 64909397 64909464 -52953163 - MLT1J2 LTR MaLR -14 436 374 462 222 80 75 chr9 64909513 64909725 -52952902 - MLT1J2 LTR MaLR -237 213 1 1291 146 76 38 chr9 64909747 64910035 -52952592 + L1MB8 LINE L1 5878 6176 -2 232 203 76 0 chr9 64910053 64910132 -52952495 + L1MC3 LINE L1 7701 7785 0 189 355 43 0 chr9 64910292 64910385 -52952242 + MIR SINE MIR 114 210 -52 688 219 24 5 chr9 64910423 64910606 -52952021 + L1M4 LINE L1 5276 5456 -718 * 2789 217 27 27 chr9 64910605 64911301 -52951326 + L1ME2 LINE L1 5351 6046 -118 2133 120 7 0 chr9 64911302 64911602 -52951025 - AluSp SINE Alu -11 302 1 180 117 33 17 chr9 64911612 64911672 -52950955 + (TTATA)n Simple_repeat Simple_repeat 5 65 0 2087 128 0 3 chr9 64912909 64913205 -52949422 + AluSq SINE Alu 5 299 -14 492 280 141 53 chr9 64913497 64913858 -52948769 + L2 LINE L2 788 1180 -2134 2505 68 0 3 chr9 64913928 64914238 -52948389 - AluY SINE Alu -2 309 1 766 180 25 0 chr9 64914266 64914388 -52948239 - FLAM_A SINE Alu -5 128 4 299 308 214 6 chr9 64915685 64915867 -52946760 + MIR SINE MIR 30 249 -13 226 216 0 20 chr9 64915835 64915886 -52946741 + L2 LINE L2 3263 3312 -1 * 2172 106 0 7 chr9 64917015 64917308 -52945319 + AluSq SINE Alu 6 296 -17 4729 145 32 21 chr9 64917347 64918195 -52944432 - L1MA6 LINE L1 -4 6296 5440 579 131 37 28 chr9 64918195 64918302 -52944325 - L1PB1 LINE L1 -41 6110 6003 327 219 0 0 chr9 64918303 64918367 -52944260 - L1M1 LINE L1 -815 5488 5425 * 1608 171 9 5 chr9 64918361 64918691 -52943936 + L1M1 LINE L1 5091 5422 -743 467 292 74 15 chr9 64919913 64920115 -52942512 + MIR SINE MIR 49 262 0 464 246 36 7 chr9 64920136 64920274 -52942353 - Charlie1 DNA MER1_type 0 2761 2620 * 890 137 65 0 chr9 64920269 64920422 -52942205 - Charlie1 DNA MER1_type -2535 226 64 1884 161 6 22 chr9 64920553 64920864 -52941763 - AluSx SINE Alu -6 306 1 4504 171 101 10 chr9 64921353 64922803 -52939824 + L1MB7 LINE L1 4591 6184 0 2161 110 0 16 chr9 64925086 64925395 -52937232 - AluSx SINE Alu -8 304 1 231 61 0 0 chr9 64926188 64926221 -52936406 + (CTTTG)n Simple_repeat Simple_repeat 2 34 0 2338 82 0 0 chr9 64926645 64926969 -52935658 - AluSc SINE Alu 0 324 1 985 228 68 67 chr9 64927067 64927573 -52935054 + MLT1G LTR MaLR 4 590 0 26 0 0 0 chr9 64927624 64927650 -52934977 + AT_rich Low_complexity Low_complexity 1 26 0 265 280 86 32 chr9 64928302 64928395 -52934232 - MIR SINE MIR -145 117 20 2165 144 0 0 chr9 64928471 64928783 -52933844 + AluSx SINE Alu 1 312 0 263 118 44 147 chr9 64928790 64928858 -52933769 - MLT1I LTR MaLR -1 408 348 568 271 37 17 chr9 64928953 64929153 -52933474 - MLT1I LTR MaLR -199 210 2 6157 146 20 31 chr9 64929453 64929707 -52932920 + L1PB2 LINE L1 4128 4383 -1768 2521 78 0 0 chr9 64929707 64930015 -52932612 + AluY SINE Alu 1 308 -3 6157 146 20 31 chr9 64930015 64931742 -52930885 + L1PB2 LINE L1 4383 6095 -56 1614 188 7 16 chr9 64931742 64932046 -52930581 + AluJb SINE Alu 2 302 -10 6157 146 20 31 chr9 64932046 64932102 -52930525 + L1PB2 LINE L1 6095 6150 -1 227 328 0 0 chr9 64932465 64932523 -52930104 + Charlie8 DNA MER1_type 3 60 -2357 1997 130 7 7 chr9 64932559 64932843 -52929784 - AluSx SINE Alu -28 284 1 254 250 16 16 chr9 64932864 64932928 -52929699 + Charlie8 DNA MER1_type 75 138 -2279 23 0 0 0 chr9 64933108 64933131 -52929496 + AT_rich Low_complexity Low_complexity 1 23 0 515 245 109 78 chr9 64933198 64933545 -52929082 + L2 LINE L2 2953 3310 -3 1911 193 93 48 chr9 64933761 64934244 -52928383 + MLT1D LTR MaLR 1 505 0 233 290 123 65 chr9 64934267 64934405 -52928222 - MIR3 SINE MIR -62 146 1 21 0 0 0 chr9 64935657 64935678 -52926949 + AT_rich Low_complexity Low_complexity 1 21 0 262 301 118 11 chr9 64935802 64935895 -52926732 - MIR SINE MIR -76 132 30 2001 199 19 56 chr9 64936011 64936439 -52926188 - MLT2D LTR ERVL -2 412 1 207 0 0 0 chr9 64936726 64936749 -52925878 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 555 173 36 62 chr9 64936749 64936916 -52925711 - MLT1G LTR MaLR -6 584 438 281 209 0 2 chr9 64937187 64937248 -52925379 - MLT1F LTR MaLR -467 75 21 2614 138 57 2 chr9 64937316 64937722 -52924905 - MSTA LTR MaLR 0 428 1 376 233 93 0 chr9 64938149 64938235 -52924392 + MIR SINE MIR 115 208 -54 3782 121 38 0 chr9 64938299 64938803 -52923824 - MER1A DNA MER1_type -4 523 1 2355 119 44 41 chr9 64939103 64939465 -52923162 + THE1B LTR MaLR 1 363 -1 267 221 29 19 chr9 64939472 64939576 -52923051 + (TA)n Simple_repeat Simple_repeat 2 106 0 2253 135 0 0 chr9 64940460 64940772 -52921855 - AluSx SINE Alu 0 312 1 2391 83 7 0 chr9 64941642 64941944 -52920683 - AluSc SINE Alu -5 304 1 186 43 0 0 chr9 64942235 64942258 -52920369 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 620 254 178 19 chr9 64942288 64942501 -52920126 + MIR SINE MIR 6 252 -10 309 68 0 0 chr9 64943321 64943365 -52919262 + (ATG)n Simple_repeat Simple_repeat 3 46 0 751 262 24 19 chr9 64943379 64943589 -52919038 - MIR SINE MIR -1 261 51 2581 228 123 9 chr9 64943742 64943865 -52918762 + L1ME1 LINE L1 5341 5449 -717 2173 123 3 0 chr9 64943865 64944158 -52918469 + AluSx SINE Alu 1 294 -18 2581 228 123 9 chr9 64944158 64944771 -52917856 + L1ME1 LINE L1 5449 6158 -8 1683 197 3 3 chr9 64944815 64945114 -52917513 + AluJb SINE Alu 1 299 -13 207 139 0 0 chr9 64945114 64945150 -52917477 + (GGA)n Simple_repeat Simple_repeat 1 36 0 536 136 16 43 chr9 64945172 64945356 -52917271 + GA-rich Low_complexity Low_complexity 2 180 0 243 203 0 0 chr9 64945372 64945441 -52917186 + GA-rich Low_complexity Low_complexity 2 70 0 681 269 128 9 chr9 64945456 64945683 -52916944 + MIR SINE MIR 2 255 -7 226 267 22 33 chr9 64946604 64946694 -52915933 + L1ME LINE L1 5614 5702 -468 1105 115 0 0 chr9 64946703 64946874 -52915753 - AluSg/x SINE Alu 0 306 136 2563 65 3 0 chr9 64946876 64947182 -52915445 - AluSp SINE Alu -5 308 2 2203 110 0 13 chr9 64947517 64947818 -52914809 + AluSx SINE Alu 2 298 -14 1218 301 124 17 chr9 64948162 64948686 -52913941 + MLT1G1 LTR MaLR 16 595 0 230 258 108 118 chr9 64949530 64949716 -52912911 + MLT1G1-int LTR MaLR 1028 1211 -160 931 276 108 72 chr9 64949874 64950385 -52912242 + MLT1G1 LTR MaLR 67 595 0 23 0 0 0 chr9 64950625 64950648 -52911979 + AT_rich Low_complexity Low_complexity 1 23 0 1661 164 35 3 chr9 64951143 64951429 -52911198 + AluJb SINE Alu 1 295 -17 249 285 109 42 chr9 64951767 64951932 -52910695 + L2 LINE L2 3121 3296 -17 1812 169 0 124 chr9 64951932 64952328 -52910299 - Tigger3(Golem) DNA MER2_type -1 3028 1 1671 117 5 0 chr9 64952871 64953094 -52909533 + AluSx SINE Alu 1 224 -88 183 80 0 0 chr9 64953094 64953119 -52909508 + (A)n Simple_repeat Simple_repeat 1 25 0 2301 109 0 0 chr9 64953772 64954074 -52908553 + AluSg SINE Alu 2 303 -7 3048 189 22 7 chr9 64956280 64956829 -52905798 - MER41D LTR ERV1 0 557 1 2121 96 38 7 chr9 64957294 64957587 -52905040 - AluSq SINE Alu -11 302 1 2077 111 17 0 chr9 64957882 64958171 -52904456 + AluSc SINE Alu 1 294 -15 475 359 15 5 chr9 64958878 64959073 -52903554 - MIR SINE MIR -65 197 1 304 188 82 12 chr9 64959602 64959687 -52902940 + MLT1J1 LTR MaLR 33 123 -323 447 217 2 11 chr9 64959794 64959900 -52902727 + MLT1I LTR MaLR 315 403 -6 3674 88 43 4 chr9 64959950 64960439 -52902188 + L1PA11 LINE L1 5666 6173 -1 968 138 6 0 chr9 64960657 64960824 -52901803 + (GAAA)n Simple_repeat Simple_repeat 4 171 0 784 224 60 69 chr9 64961421 64961653 -52900974 - MER34B LTR ERV1 -335 230 1 482 246 34 67 chr9 64961653 64961802 -52900825 - LTR16A LTR ERVL -296 154 12 1542 174 39 39 chr9 64963282 64963587 -52899040 + AluJo SINE Alu 1 305 -7 288 318 36 9 chr9 64964947 64965057 -52897570 + L2 LINE L2 3158 3270 -2 1033 194 24 0 chr9 64965427 64965592 -52897035 + FAM SINE Alu 2 170 -5 2213 157 41 3 chr9 64965672 64966041 -52896586 - MLT1B LTR MaLR 0 390 8 1576 247 20 9 chr9 64966283 64966686 -52895941 + ERVL LTR ERVL 94 518 -5161 445 214 0 11 chr9 64966731 64966820 -52895807 + MLT1A1 LTR MaLR 1 88 -277 268 189 57 74 chr9 64966870 64966992 -52895635 + L1 LINE L1 5175 5294 -852 * 5052 199 25 14 chr9 64966975 64967692 -52894935 + L1MA9 LINE L1 4273 5009 -1137 2232 86 38 0 chr9 64967692 64967983 -52894644 + AluY SINE Alu 1 302 -9 5052 199 25 14 chr9 64967983 64968363 -52894264 + L1MA9 LINE L1 5009 5383 -763 1676 190 15 110 chr9 64968372 64968414 -52894213 + L1MA9 LINE L1 5788 5832 -480 1772 195 0 3 chr9 64968414 64968727 -52893900 + AluJb SINE Alu 1 312 0 1667 203 7 0 chr9 64968735 64969025 -52893602 + AluJo SINE Alu 3 294 -18 1676 190 15 110 chr9 64969025 64969170 -52893457 + L1MA9 LINE L1 5839 5996 -316 1781 179 0 20 chr9 64969170 64969472 -52893155 + AluJb SINE Alu 1 296 -16 1676 190 15 110 chr9 64969472 64969821 -52892806 + L1MA9 LINE L1 5996 6282 -30 251 139 0 0 chr9 64969895 64969931 -52892696 + MLT1A1 LTR MaLR 223 258 -138 842 259 5 5 chr9 64969934 64970127 -52892500 + MLT1A1 LTR MaLR 173 365 0 1597 253 169 81 chr9 64970141 64971126 -52891501 + MLT1A2-int LTR MaLR 287 1357 -14 1570 224 42 17 chr9 64971146 64971504 -52891123 + MLT1A2 LTR MaLR 4 370 -4 219 284 40 0 chr9 64972562 64972636 -52889991 - L2 LINE L2 0 3313 3237 2080 121 34 7 chr9 64972843 64973141 -52889486 - AluSg SINE Alu -4 306 1 389 210 43 72 chr9 64973653 64973708 -52888919 - L1MA10 LINE L1 -4 6330 6276 2776 256 91 60 chr9 64973708 64974620 -52888007 - L1ME1 LINE L1 -44 6191 5309 2038 110 46 0 chr9 64974620 64974902 -52887725 + AluY SINE Alu 1 295 -16 2776 256 91 60 chr9 64974902 64975409 -52887218 - L1ME1 LINE L1 -926 5309 4819 2108 80 44 7 chr9 64975409 64975738 -52886889 + AluY SINE Alu 1 339 0 2776 256 91 60 chr9 64975738 64976538 -52886089 - L1ME1 LINE L1 -1416 4819 3859 23847 146 23 21 chr9 64976546 64983329 -52879298 + L1MA3 LINE L1 16 6789 -935 2482 72 0 3 chr9 64983329 64983635 -52878992 + AluY SINE Alu 1 305 -6 2337 107 0 0 chr9 64983645 64983944 -52878683 + AluSc SINE Alu 1 299 -10 23847 146 23 21 chr9 64983944 64984838 -52877789 + L1MA3 LINE L1 6797 7724 0 3672 239 63 46 chr9 64984856 64986383 -52876244 - L1ME1 LINE L1 -2348 3867 2315 1655 282 66 16 chr9 64986384 64986930 -52875697 - L1ME1 LINE L1 -5822 574 2 2314 111 0 0 chr9 64986958 64987264 -52875363 - AluSc SINE Alu -3 306 1 2502 74 0 6 chr9 64987271 64987583 -52875044 - AluY SINE Alu -1 310 1 214 186 0 0 chr9 64987809 64987852 -52874775 + T-rich Low_complexity Low_complexity 1 43 0 2240 104 3 0 chr9 64989341 64989630 -52872997 - AluSq SINE Alu -18 295 6 1678 172 27 3 chr9 64989991 64990287 -52872340 + AluSx SINE Alu 1 303 -9 1877 163 3 14 chr9 64991165 64991300 -52871327 + AluSx SINE Alu 1 136 -176 2143 128 0 7 chr9 64991300 64991586 -52871041 + AluSx SINE Alu 1 286 -26 180 97 0 0 chr9 64991586 64991617 -52871010 + (CTAA)n Simple_repeat Simple_repeat 2 32 0 2143 128 0 7 chr9 64991617 64991634 -52870993 + AluSx SINE Alu 286 302 -10 1877 163 3 14 chr9 64991634 64991792 -52870835 + AluSx SINE Alu 136 291 -21 5577 69 10 0 chr9 64992160 64992844 -52869783 - LTR8 LTR ERV1 0 691 1 219 36 0 0 chr9 64993219 64993247 -52869380 + (CA)n Simple_repeat Simple_repeat 2 29 0 1515 205 26 0 chr9 64993587 64993860 -52868767 + AluJo SINE Alu 1 280 -32 263 250 0 15 chr9 64994514 64994582 -52868045 - LTR67 LTR ERVL -7 550 484 202 355 90 24 chr9 64995428 64995594 -52867033 + L3 LINE CR1 1399 1575 -2 3612 67 0 0 chr9 64995818 64996254 -52866373 - MLT2A1 LTR ERVL -8 436 1 326 217 44 71 chr9 64996851 64996991 -52865636 + L1P4 LINE L1 5700 5836 -325 378 61 0 0 chr9 64997192 64997241 -52865386 + (TC)n Simple_repeat Simple_repeat 1 49 0 2216 121 0 0 chr9 64997341 64997631 -52864996 + AluSx SINE Alu 1 290 -22 2262 86 3 10 chr9 64998402 64998704 -52863923 + AluSq SINE Alu 1 300 -13 549 253 29 40 chr9 64998794 64998968 -52863659 - MER5B DNA MER1_type 0 178 7 592 278 77 5 chr9 64999751 64999945 -52862682 + MIR SINE MIR 53 260 -2 2162 187 86 18 chr9 65000295 65000918 -52861709 - Tigger7 DNA MER2_type 0 2587 1 1624 161 40 26 chr9 65001996 65002370 -52860257 - AluJb SINE Alu 0 382 5 635 217 204 66 chr9 65002409 65002879 -52859748 - MLT1G LTR MaLR 0 590 1 2462 74 0 3 chr9 65003014 65003323 -52859304 + AluY SINE Alu 1 308 -3 199 286 0 18 chr9 65004067 65004123 -52858504 + MIR3 SINE MIR 5 59 -149 1022 191 0 6 chr9 65004695 65004868 -52857759 + FAM SINE Alu 1 172 -3 1856 161 0 43 chr9 65005022 65005346 -52857281 - AluJb SINE Alu -2 310 1 1675 179 33 23 chr9 65005722 65005902 -52856725 - AluJo SINE Alu -2 310 124 261 0 0 0 chr9 65005902 65005931 -52856696 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1675 179 33 23 chr9 65005931 65006057 -52856570 - AluJo SINE Alu -188 124 1 646 200 0 0 chr9 65006258 65006368 -52856259 + FLAM_C SINE Alu 2 111 -32 2181 127 0 10 chr9 65006422 65006736 -52855891 - AluSx SINE Alu -1 311 1 344 257 53 26 chr9 65006947 65007060 -52855567 + MLT1J2 LTR MaLR 15 130 -320 909 123 84 0 chr9 65007541 65007696 -52854931 + Tigger4(Zombi) DNA MER2_type 1 168 -2563 * 2839 116 19 36 chr9 65007694 65008170 -52854457 + Tigger4(Zombi) DNA MER2_type 2264 2731 0 482 270 42 64 chr9 65008590 65008901 -52853726 + L1ME4a LINE L1 5591 5894 -227 27 29 0 0 chr9 65009005 65009039 -52853588 + AT_rich Low_complexity Low_complexity 1 34 0 1570 164 25 0 chr9 65009047 65009285 -52853342 - AluSx SINE Alu -68 244 1 2471 195 13 51 chr9 65010694 65011227 -52851400 + MER89 LTR ERV1 1 513 -46 694 186 45 13 chr9 65011277 65011433 -52851194 + MER5A DNA MER1_type 27 187 -2 990 230 83 50 chr9 65012077 65012356 -52850271 - MER69 DNA AcHobo -82 2444 2145 2151 108 10 0 chr9 65012356 65012644 -52849983 + AluSx SINE Alu 1 291 -21 990 230 83 50 chr9 65012644 65012785 -52849842 - MER69 DNA AcHobo -381 2145 2010 * 1074 272 35 50 chr9 65012783 65013154 -52849473 - MER69 DNA AcHobo -1958 568 202 2017 148 21 9 chr9 65013154 65013493 -52849134 + MER61A LTR ERV1 1 343 0 1074 272 35 50 chr9 65013493 65013525 -52849102 - MER69 DNA AcHobo -2324 202 171 2241 125 0 0 chr9 65014185 65014489 -52848138 - AluSx SINE Alu -8 304 1 2460 62 7 3 chr9 65014498 65014805 -52847822 - AluY SINE Alu -3 308 1 878 198 0 12 chr9 65015471 65015638 -52846989 - AluJb SINE Alu -5 307 143 24 0 0 0 chr9 65015651 65015675 -52846952 + AT_rich Low_complexity Low_complexity 1 24 0 306 271 60 8 chr9 65015678 65015811 -52846816 - L1ME4a LINE L1 -15 6106 5967 261 0 0 0 chr9 65016002 65016031 -52846596 + (T)n Simple_repeat Simple_repeat 1 29 0 1849 126 92 22 chr9 65016054 65016580 -52846047 - LTR9 LTR ERV1 0 612 1 1722 167 3 27 chr9 65016608 65016908 -52845719 + AluJo SINE Alu 1 293 -19 355 291 20 34 chr9 65016985 65017133 -52845494 - L1ME4a LINE L1 -360 5761 5616 1985 140 0 7 chr9 65017550 65017842 -52844785 - AluSx SINE Alu -22 290 1 25 0 0 0 chr9 65018123 65018148 -52844479 + AT_rich Low_complexity Low_complexity 1 25 0 2276 84 7 3 chr9 65018987 65019283 -52843344 + AluSp SINE Alu 1 297 -16 1538 181 10 46 chr9 65019861 65020164 -52842463 + AluJb SINE Alu 1 292 -20 534 31 0 0 chr9 65020175 65020239 -52842388 + (GGAA)n Simple_repeat Simple_repeat 4 67 0 388 259 108 0 chr9 65020422 65020588 -52842039 - AluSx SINE Alu -118 184 1 1433 209 73 3 chr9 65020596 65020951 -52841676 - LTR37A LTR ERV1 -14 412 33 183 252 24 126 chr9 65021502 65021521 -52841106 - MIR SINE MIR -147 115 96 2319 114 0 16 chr9 65021521 65021838 -52840789 + AluSx SINE Alu 1 312 0 183 252 24 126 chr9 65021838 65021945 -52840682 - MIR SINE MIR -166 96 2 210 193 0 0 chr9 65022920 65022977 -52839650 + A-rich Low_complexity Low_complexity 1 57 0 279 228 0 0 chr9 65023076 65023133 -52839494 - MER63 DNA MER1_type -320 740 684 770 141 47 7 chr9 65023166 65023315 -52839312 - L1MB7 LINE L1 -51 6133 5979 284 148 93 0 chr9 65023315 65023369 -52839258 - MER63 DNA MER1_type -151 685 1 3198 144 43 43 chr9 65024129 65024735 -52837892 + MER4B LTR ERV1 3 608 -2 2413 79 0 3 chr9 65024771 65025076 -52837551 - AluY SINE Alu -7 304 1 299 238 0 0 chr9 65025097 65025160 -52837467 + MER5A DNA MER1_type 9 71 -118 1064 204 15 5 chr9 65025166 65025367 -52837260 + AluJo SINE Alu 1 203 -109 2080 141 55 27 chr9 65025373 65025777 -52836850 - LTR7 LTR ERV1 0 450 36 1627 114 5 5 chr9 65025777 65026029 -52836598 + AluSp SINE Alu 64 315 0 604 221 0 0 chr9 65026029 65026142 -52836485 + AluJo/FRAM SINE Alu 132 244 -68 1971 169 10 3 chr9 65026423 65026731 -52835896 + AluSx SINE Alu 1 310 -2 420 295 137 22 chr9 65027070 65027285 -52835342 - L1ME LINE L1 -403 5718 5452 2264 96 0 3 chr9 65027285 65027578 -52835049 - AluSq SINE Alu -11 302 11 420 295 137 22 chr9 65027578 65027684 -52834943 - L1ME LINE L1 -669 5452 5360 3630 40 0 11 chr9 65027998 65028451 -52834176 + LTR7 LTR ERV1 1 448 -2 17538 92 15 24 chr9 65028453 65031645 -52830982 + HERVH LTR ERV1 1 2995 -4718 990 120 7 0 chr9 65031624 65031774 -52830853 + HERVH LTR ERV1 3140 3290 -4423 * 3386 121 0 6 chr9 65031764 65032267 -52830360 + HERVH LTR ERV1 3492 3991 -3722 4506 136 1 1 chr9 65032272 65032934 -52829693 + HERVH LTR ERV1 4488 5149 -2564 1439 130 19 0 chr9 65032935 65033151 -52829476 + HERVH LTR ERV1 5600 5819 -1894 * 2567 79 45 13 chr9 65033149 65033529 -52829098 + HERVH LTR ERV1 7322 7713 0 3355 50 0 70 chr9 65033529 65034011 -52828616 + LTR7 LTR ERV1 1 448 -2 2309 119 3 0 chr9 65034577 65034887 -52827740 - AluSp SINE Alu -2 311 1 284 277 44 58 chr9 65035193 65035330 -52827297 + MIR SINE MIR 117 251 -11 896 181 12 18 chr9 65035339 65035505 -52827122 + FAM SINE Alu 8 172 -13 1329 209 0 0 chr9 65035507 65035756 -52826871 - AluJb SINE Alu -22 290 42 710 185 0 7 chr9 65036004 65036155 -52826472 + CT-rich Low_complexity Low_complexity 2 151 0 2578 54 0 0 chr9 65036276 65036574 -52826053 - AluY SINE Alu -13 298 1 2000 240 48 14 chr9 65036602 65037118 -52825509 - MLT1F LTR MaLR -4 538 5 322 288 144 26 chr9 65037201 65037354 -52825273 - LTR67 LTR ERVL -4 553 383 323 130 148 0 chr9 65037446 65037500 -52825127 + Tigger2 DNA MER2_type 1 62 -2656 2413 126 80 17 chr9 65037521 65037695 -52824932 + Tigger2 DNA MER2_type 2280 2442 -276 2110 117 54 35 chr9 65037695 65038063 -52824564 - THE1C LTR MaLR 0 375 1 2413 126 80 17 chr9 65038063 65038301 -52824326 + Tigger2 DNA MER2_type 2442 2718 0 573 258 21 54 chr9 65038365 65038551 -52824076 - LTR67 LTR ERVL -377 180 1 226 234 47 109 chr9 65038697 65038748 -52823879 - LTR16A1 LTR ERVL -2 455 402 2358 99 0 3 chr9 65038748 65039051 -52823576 - AluSx SINE Alu -6 306 5 226 234 47 109 chr9 65039051 65039127 -52823500 - LTR16A1 LTR ERVL -55 402 336 325 243 75 41 chr9 65039128 65039377 -52823250 + L2 LINE L2 2794 3051 -262 2107 94 0 7 chr9 65039746 65040045 -52822582 + AluSc SINE Alu 21 309 0 2067 136 125 0 chr9 65040328 65040680 -52821947 + MER57A LTR ERV1 8 403 0 626 153 110 0 chr9 65041380 65041543 -52821084 + AluSx SINE Alu 28 208 -104 2024 137 128 0 chr9 65042264 65042615 -52820012 - MER57A LTR ERV1 0 403 8 2107 94 0 7 chr9 65042898 65043197 -52819430 - AluSc SINE Alu 0 309 21 343 245 73 40 chr9 65043566 65043821 -52818806 - L2 LINE L2 -262 3051 2788 1998 99 0 82 chr9 65043892 65044217 -52818410 + AluSx SINE Alu 5 304 0 182 314 29 20 chr9 65044231 65044333 -52818294 - L2 LINE L2 -1676 1638 1536 2294 118 0 0 chr9 65044542 65044846 -52817781 + AluSc SINE Alu 1 304 -5 1253 198 62 81 chr9 65044850 65045207 -52817420 - LTR10B LTR ERV1 0 597 257 957 309 56 53 chr9 65045333 65045404 -52817223 - L2 LINE L2 -2042 1272 1203 2316 101 0 0 chr9 65045404 65045691 -52816936 + AluSg SINE Alu 1 287 -23 957 309 56 53 chr9 65045691 65046280 -52816347 - L2 LINE L2 -2111 1203 610 1628 186 3 10 chr9 65046331 65046627 -52816000 + AluJb SINE Alu 18 311 -1 2573 65 3 3 chr9 65046784 65047090 -52815537 - AluSp SINE Alu -7 306 1 2528 64 0 10 chr9 65047625 65047937 -52814690 - AluY SINE Alu -2 309 1 274 61 41 0 chr9 65048074 65048123 -52814504 + (TA)n Simple_repeat Simple_repeat 2 52 0 402 288 75 0 chr9 65048286 65048432 -52814195 - MIR3 SINE MIR -5 203 47 758 117 0 90 chr9 65050267 65050412 -52812215 + FRAM SINE Alu 44 175 -1 2116 121 6 16 chr9 65050646 65050960 -52811667 - AluSq SINE Alu -2 311 1 690 55 0 0 chr9 65050981 65051072 -52811555 + (TA)n Simple_repeat Simple_repeat 2 92 0 1071 72 0 0 chr9 65051074 65051199 -52811428 - AluSp SINE Alu -188 125 1 695 250 0 0 chr9 65051334 65051466 -52811161 - MER63A DNA MER1_type -23 187 56 775 139 8 16 chr9 65051474 65051596 -52811031 + FLAM_A SINE Alu 8 128 -14 1930 101 18 0 chr9 65052023 65052301 -52810326 - L1PA11 LINE L1 0 6174 5892 254 269 167 19 chr9 65053101 65053209 -52809418 - MIR3 SINE MIR -41 167 44 189 74 0 0 chr9 65053263 65053290 -52809337 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1098 162 5 11 chr9 65053300 65053514 -52809113 + AluSg/x SINE Alu 112 312 0 1403 168 10 71 chr9 65053516 65053813 -52808814 + AluJb SINE Alu 1 279 -33 747 101 44 19 chr9 65053814 65053972 -52808655 + GA-rich Low_complexity Low_complexity 1 162 0 202 97 32 0 chr9 65053972 65054003 -52808624 + G-rich Low_complexity Low_complexity 3 34 0 582 302 107 39 chr9 65054686 65055438 -52807189 - HERVL LTR ERVL -1945 3709 2850 1309 239 64 36 chr9 65055717 65055765 -52806862 + MER74B LTR ERVL 56 101 -521 2026 174 55 11 chr9 65055765 65056144 -52806483 - MSTD LTR MaLR 0 396 1 1309 239 64 36 chr9 65056144 65056455 -52806172 + MER74B LTR ERVL 101 425 -197 646 193 0 0 chr9 65056455 65056574 -52806053 + FLAM_A SINE Alu 6 124 -18 409 236 24 41 chr9 65056576 65056699 -52805928 + MER74B LTR ERVL 420 540 -82 369 228 76 0 chr9 65056626 65056718 -52805909 - MER88 LTR ERVL -286 178 80 * 1644 154 87 0 chr9 65057337 65057623 -52805004 + AluSq SINE Alu 1 311 -2 423 301 25 0 chr9 65058721 65058884 -52803743 + MER112 DNA MER1_type 1 167 -93 2099 118 0 14 chr9 65059009 65059145 -52803482 + AluSx SINE Alu 1 137 -173 2273 110 3 0 chr9 65059145 65059453 -52803174 + AluSp SINE Alu 1 309 -4 2099 118 0 14 chr9 65059453 65059630 -52802997 + AluSx SINE Alu 137 310 0 2971 9 0 0 chr9 65059973 65060291 -52802336 - AluYb8 SINE Alu 0 318 1 516 236 114 94 chr9 65060519 65060816 -52801811 + MER34 LTR ERV1 4 306 -259 2818 166 17 84 chr9 65060822 65060934 -52801693 - MLT2B3 LTR ERVL -2 552 434 2196 113 3 22 chr9 65060934 65061245 -52801382 + AluSq SINE Alu 1 305 -8 2818 166 17 84 chr9 65061245 65061269 -52801358 - MLT2B3 LTR ERVL -120 434 410 2137 132 0 0 chr9 65061269 65061565 -52801062 + AluSx SINE Alu 1 296 -16 2818 166 17 84 chr9 65061565 65062019 -52800608 - MLT2B3 LTR ERVL -144 410 1 809 192 0 0 chr9 65062019 65062165 -52800462 - ERVL-B3 LTR ERVL -7 5757 5612 1275 171 106 44 chr9 65062165 65062324 -52800303 + AluJo SINE Alu 1 186 -126 2373 151 41 12 chr9 65062324 65062740 -52799887 - MSTA LTR MaLR 0 428 1 1275 171 106 44 chr9 65062740 65062855 -52799772 + AluJo SINE Alu 186 292 -20 8442 172 34 3 chr9 65062856 65064754 -52797873 - ERVL-B3 LTR ERVL -144 5620 3600 2346 95 3 0 chr9 65064805 65065100 -52797527 + AluSp SINE Alu 1 296 -17 381 216 167 50 chr9 65065113 65065335 -52797292 + MER34 LTR ERV1 295 542 0 1613 155 80 92 chr9 65065757 65066106 -52796521 + MER7A DNA MER2_type 2 344 -2 626 268 108 67 chr9 65066562 65067043 -52795584 + MLT1J LTR MaLR 1 501 -10 2522 108 5 22 chr9 65067133 65067503 -52795124 + THE1B LTR MaLR 1 364 0 2092 147 0 6 chr9 65067978 65068292 -52794335 + AluSx SINE Alu 1 312 0 337 289 31 0 chr9 65069118 65069215 -52793412 + MIR3 SINE MIR 88 187 -21 385 352 64 36 chr9 65069316 65069460 -52793167 - MIR SINE MIR 0 262 107 1788 183 20 0 chr9 65069460 65069766 -52792861 + AluJo SINE Alu 1 312 0 385 352 64 36 chr9 65069766 65069871 -52792756 - MIR SINE MIR -155 107 6 235 273 73 27 chr9 65070376 65070486 -52792141 + MIR SINE MIR 35 149 -113 39 22 0 0 chr9 65070539 65070585 -52792042 + AT_rich Low_complexity Low_complexity 1 46 0 2254 92 3 0 chr9 65071263 65071546 -52791081 + AluSg SINE Alu 1 284 -26 1105 153 6 17 chr9 65071582 65071758 -52790869 - L1PA8A LINE L1 -21 6110 5937 2602 137 65 14 chr9 65072386 65072816 -52789811 - LTR47A LTR ERVL 0 452 1 949 157 15 45 chr9 65073191 65073389 -52789238 + MLT1A1 LTR MaLR 10 201 -164 180 111 0 0 chr9 65073432 65073459 -52789168 + (TA)n Simple_repeat Simple_repeat 2 28 0 277 344 26 13 chr9 65074216 65074367 -52788260 + MIR SINE MIR 41 193 -69 2570 123 44 7 chr9 65074808 65075221 -52787406 - MSTA LTR MaLR 0 428 1 9488 150 22 29 chr9 65075221 65075930 -52786697 - MSTA-int LTR MaLR 0 1651 938 1987 160 3 7 chr9 65075930 65076236 -52786391 + AluSx SINE Alu 1 305 -7 9488 150 22 29 chr9 65076236 65077190 -52785437 - MSTA-int LTR MaLR -713 938 1 2603 118 41 7 chr9 65077190 65077604 -52785023 - MSTA LTR MaLR 0 428 1 312 27 0 0 chr9 65078163 65078200 -52784427 + (TG)n Simple_repeat Simple_repeat 2 38 0 331 257 9 19 chr9 65078364 65078435 -52784192 + GA-rich Low_complexity Low_complexity 2 73 -32 2593 65 0 0 chr9 65078435 65078744 -52783883 + AluY SINE Alu 1 309 -2 331 257 9 19 chr9 65078744 65078777 -52783850 + GA-rich Low_complexity Low_complexity 73 105 0 406 254 82 16 chr9 65078974 65079096 -52783531 - MIR3 SINE MIR -40 168 39 2349 99 3 13 chr9 65079970 65080283 -52782344 - AluSg SINE Alu 0 310 1 2371 140 44 70 chr9 65080325 65080533 -52782094 - Tigger2 DNA MER2_type 0 2718 2506 2483 63 0 0 chr9 65080533 65080834 -52781793 - AluY SINE Alu -10 301 1 2371 140 44 70 chr9 65080834 65081083 -52781544 - Tigger2 DNA MER2_type -212 2506 2273 416 178 0 14 chr9 65081070 65081143 -52781484 - Tigger2 DNA MER2_type -2646 72 1 * 196 254 16 32 chr9 65081143 65081206 -52781421 - L2 LINE L2 -68 3245 3184 415 281 89 18 chr9 65081207 65081431 -52781196 - L1ME4a LINE L1 -265 5856 5617 2120 106 0 7 chr9 65081576 65081859 -52780768 - AluSx SINE Alu -31 281 1 308 324 0 0 chr9 65082514 65082622 -52780005 + L1ME4a LINE L1 5938 6045 -76 236 258 121 57 chr9 65082895 65082926 -52779701 - MIR SINE MIR -57 151 123 2252 109 13 0 chr9 65082926 65083230 -52779397 + AluSg SINE Alu 1 308 -2 236 258 121 57 chr9 65083230 65083322 -52779305 - MIR SINE MIR -85 123 20 1094 149 185 7 chr9 65084228 65084504 -52778123 + LTR56 LTR ERV1 1 325 -120 836 63 18 0 chr9 65084515 65084626 -52778001 + AluY SINE Alu 20 132 -179 2535 144 60 5 chr9 65084738 65085168 -52777459 + MER41B LTR ERV1 182 635 0 2569 66 0 0 chr9 65085195 65085496 -52777131 + AluY SINE Alu 1 301 -10 555 298 68 0 chr9 65085632 65085793 -52776834 + MER5B DNA MER1_type 1 172 -6 250 327 193 27 chr9 65085850 65086000 -52776627 - MER5A DNA MER1_type 0 189 4 444 291 0 0 chr9 65086089 65086206 -52776421 + MER33 DNA MER1_type 5 121 -203 257 170 21 0 chr9 65086254 65086301 -52776326 + MER33 DNA MER1_type 277 324 0 304 278 56 11 chr9 65086304 65086394 -52776233 + L2 LINE L2 3208 3301 -12 1312 261 16 13 chr9 65086512 65086826 -52775801 - LTR16C LTR ERVL 0 491 177 660 216 56 37 chr9 65086833 65086995 -52775632 - LTR16C LTR ERVL -250 241 77 827 241 64 60 chr9 65087032 65087571 -52775056 + LTR48 LTR ERV1 3 787 0 1793 140 0 4 chr9 65087626 65087904 -52774723 - AluSx SINE Alu -35 277 1 2277 74 0 10 chr9 65088393 65088691 -52773936 + AluY SINE Alu 1 295 -16 1303 171 43 49 chr9 65089267 65089571 -52773056 - AluSx SINE Alu -10 302 1 869 145 17 41 chr9 65089609 65089781 -52772846 + FRAM SINE Alu 9 176 0 629 211 48 7 chr9 65089806 65089953 -52772674 - Charlie8 DNA MER1_type -2212 205 53 2030 96 3 0 chr9 65089955 65090289 -52772338 + AluY SINE Alu 1 335 0 22 35 0 0 chr9 65090520 65090549 -52772078 + AT_rich Low_complexity Low_complexity 1 29 0 1968 184 20 41 chr9 65090585 65090861 -52771766 - MLT2C1 LTR ERVL -8 389 122 2281 71 0 3 chr9 65090861 65091157 -52771470 + AluY SINE Alu 1 295 -16 1968 184 20 41 chr9 65091157 65091272 -52771355 - MLT2C1 LTR ERVL -275 122 6 1900 143 3 0 chr9 65091578 65091878 -52770749 - AluSx SINE Alu -11 301 1 488 218 127 36 chr9 65091881 65092046 -52770581 - MIR SINE MIR -64 198 19 233 272 44 11 chr9 65092061 65092195 -52770432 - MIR SINE MIR -60 202 15 514 271 161 0 chr9 65093109 65093308 -52769319 - MIR SINE MIR -1 261 31 2324 68 0 0 chr9 65093612 65093906 -52768721 + AluY SINE Alu 2 295 -16 807 160 0 0 chr9 65093913 65094038 -52768589 + FLAM_C SINE Alu 5 129 -4 1965 128 3 0 chr9 65094458 65094747 -52767880 + AluSx SINE Alu 1 290 -22 21 0 0 0 chr9 65096120 65096141 -52766486 + AT_rich Low_complexity Low_complexity 1 21 0 312 306 67 44 chr9 65096911 65097091 -52765536 - L1MC4 LINE L1 -1344 6698 6515 272 240 74 83 chr9 65097975 65098096 -52764531 + MIR SINE MIR 33 152 -56 262 257 239 9 chr9 65098109 65098218 -52764409 - MER5A DNA MER1_type -1 188 55 198 231 58 19 chr9 65098186 65098238 -52764389 + MER5A DNA MER1_type 114 167 -22 * 221 278 0 0 chr9 65098251 65098305 -52764322 + MIR3 SINE MIR 153 206 -2 788 290 101 31 chr9 65098319 65098705 -52763922 + MLT1J2 LTR MaLR 5 417 -33 522 212 165 68 chr9 65098814 65099295 -52763332 - MLT1G LTR MaLR -6 561 9 624 189 25 8 chr9 65099372 65099494 -52763133 + FLAM_C SINE Alu 3 126 -17 1342 171 72 111 chr9 65099552 65100038 -52762589 - MLT1C LTR MaLR 0 467 1 234 284 162 34 chr9 65101030 65101178 -52761449 + MIR SINE MIR 80 246 -16 481 189 134 8 chr9 65101665 65101792 -52760835 - Charlie8 DNA MER1_type -2229 188 46 197 349 45 0 chr9 65101903 65101969 -52760658 - L3 LINE CR1 -454 1123 1055 871 234 156 14 chr9 65103701 65103996 -52758631 - LTR16C LTR ERVL 0 491 155 2137 102 7 0 chr9 65105519 65105814 -52756813 + AluSc SINE Alu 3 299 -10 199 281 37 37 chr9 65105929 65106011 -52756616 + L2 LINE L2 3231 3312 -1 321 378 7 20 chr9 65106317 65106465 -52756162 + MER5A DNA MER1_type 1 146 -43 218 283 139 53 chr9 65107063 65107250 -52755377 + MIR SINE MIR 35 237 -25 186 268 0 0 chr9 65107858 65107899 -52754728 + MIR SINE MIR 108 148 -60 272 204 20 82 chr9 65108060 65108158 -52754469 + MER63 DNA MER1_type 699 1642 -46 426 253 100 27 chr9 65108235 65108385 -52754242 + MLT1G1 LTR MaLR 15 175 -420 1031 218 37 0 chr9 65108646 65108862 -52753765 - MER58A DNA MER1_type 0 224 1 499 239 17 0 chr9 65108959 65109076 -52753551 + LTR16A LTR ERVL 329 447 -3 309 337 124 34 chr9 65110166 65110485 -52752142 - L1MC/D LINE L1 -355 5815 5484 185 0 40 0 chr9 65110488 65110513 -52752114 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2014 106 4 0 chr9 65110519 65110793 -52751834 - AluSq SINE Alu -30 283 9 477 269 50 41 chr9 65110817 65111161 -52751466 - L1MC/D LINE L1 -748 5398 5126 265 224 0 0 chr9 65111216 65111265 -52751362 + MIR SINE MIR 72 120 -142 789 234 34 11 chr9 65111434 65111609 -52751018 - MER63A DNA MER1_type -28 182 4 278 264 126 0 chr9 65111679 65111766 -52750861 - L3 LINE CR1 -175 1402 1305 292 240 59 74 chr9 65111792 65111959 -52750668 - MER58 DNA MER1_type -48 2372 6 191 258 15 45 chr9 65112008 65112074 -52750553 - L3 LINE CR1 -306 1271 1208 254 250 0 17 chr9 65112292 65112352 -52750275 + MIR SINE MIR 63 121 -141 1257 267 46 70 chr9 65112378 65112903 -52749724 + MLT1G1 LTR MaLR 73 584 -11 292 286 132 0 chr9 65112913 65113004 -52749623 + MIR SINE MIR 158 260 -2 214 257 27 27 chr9 65113134 65113208 -52749419 + MIR SINE MIR 183 256 -6 2010 114 3 3 chr9 65114009 65114306 -52748321 - AluSx SINE Alu -15 297 1 611 201 6 0 chr9 65116226 65116395 -52746232 + CT-rich Low_complexity Low_complexity 3 172 0 201 296 0 0 chr9 65116574 65116628 -52745999 + GA-rich Low_complexity Low_complexity 2 55 0 258 332 29 104 chr9 65117514 65117897 -52744730 - L2 LINE L2 -4 3268 2915 3745 188 46 5 chr9 65118006 65118766 -52743861 - L1MB7 LINE L1 -15 6169 5379 635 322 62 42 chr9 65118795 65119248 -52743379 - L2 LINE L2 -628 2686 2225 397 308 15 8 chr9 65119947 65120080 -52742547 + LTR33 LTR ERVL 10 143 -378 506 295 160 0 chr9 65120128 65120372 -52742255 + LTR33 LTR ERVL 235 517 -4 180 283 150 17 chr9 65121136 65121196 -52741431 + MIR SINE MIR 125 192 -70 900 149 39 0 chr9 65123579 65123733 -52738894 + L1MB2 LINE L1 6012 6171 0 930 227 93 30 chr9 65124337 65124690 -52737937 - MLT1C LTR MaLR 0 467 52 751 275 97 29 chr9 65124690 65125032 -52737595 + MLT1A1 LTR MaLR 1 365 0 365 194 15 0 chr9 65125074 65125141 -52737486 + MER5A DNA MER1_type 8 75 -114 1538 190 14 0 chr9 65125180 65125475 -52737152 + AluJo SINE Alu 1 299 -13 653 203 8 0 chr9 65125486 65125614 -52737013 + FLAM_A SINE Alu 1 129 -4 552 246 66 0 chr9 65125619 65125741 -52736886 + MER5A DNA MER1_type 60 189 0 22 35 0 0 chr9 65125751 65125780 -52736847 + AT_rich Low_complexity Low_complexity 1 29 0 489 232 30 142 chr9 65126081 65126314 -52736313 + MER102b DNA MER1_type 126 332 -9 1178 254 99 29 chr9 65127547 65127991 -52734636 - MLT2B1 LTR ERVL 0 520 46 1101 153 37 5 chr9 65128203 65128392 -52734235 + MER20 DNA MER1_type 19 213 -6 633 175 14 7 chr9 65128402 65128545 -52734082 + GA-rich Low_complexity Low_complexity 2 145 0 248 291 29 10 chr9 65129302 65129405 -52733222 + GA-rich Low_complexity Low_complexity 2 106 0 380 316 0 10 chr9 65130557 65130655 -52731972 + MLT1K LTR MaLR 106 202 -386 619 278 35 18 chr9 65130740 65130967 -52731660 + MLT1K LTR MaLR 334 564 -24 306 87 0 0 chr9 65131959 65132005 -52730622 + (GA)n Simple_repeat Simple_repeat 1 46 0 2129 72 0 18 chr9 65132012 65132290 -52730337 + AluSg SINE Alu 37 309 -1 621 244 80 23 chr9 65133087 65133263 -52729364 + MIR SINE MIR 77 262 0 2468 211 85 51 chr9 65134248 65134297 -52728330 - MER82 DNA MER2_type -6 647 601 1619 171 0 23 chr9 65134297 65134596 -52728031 - AluJo SINE Alu -12 300 9 2468 211 85 51 chr9 65134596 65135172 -52727455 - MER82 DNA MER2_type -52 601 1 348 314 58 67 chr9 65135543 65135766 -52726861 - MIR SINE MIR -36 226 6 232 95 0 48 chr9 65136131 65136173 -52726454 - MER103 DNA DNA -105 61 22 181 287 32 75 chr9 65136962 65137150 -52725477 - L2 LINE L2 -217 3055 2876 244 212 124 0 chr9 65137197 65137281 -52725346 + MIR SINE MIR 58 154 -108 553 237 210 53 chr9 65137628 65138136 -52724491 + MLT1H1 LTR MaLR 5 555 0 22 0 0 0 chr9 65138918 65138940 -52723687 + AT_rich Low_complexity Low_complexity 1 22 0 1703 166 7 7 chr9 65144022 65144318 -52718309 + AluJo SINE Alu 5 300 -12 264 59 0 0 chr9 65144501 65144535 -52718092 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 230 294 42 84 chr9 65144888 65145031 -52717596 + L3 LINE CR1 370 506 -1071 600 287 79 53 chr9 65145126 65145429 -52717198 + L3 LINE CR1 670 980 -597 289 310 80 20 chr9 65145595 65145695 -52716932 + L3 LINE CR1 1463 1568 -9 1949 96 0 69 chr9 65145698 65146001 -52716626 + AluSp SINE Alu 1 282 -31 214 325 110 25 chr9 65146294 65146403 -52716224 + MIR SINE MIR 20 149 -113 195 42 0 0 chr9 65146403 65146427 -52716200 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 214 325 110 25 chr9 65146427 65146480 -52716147 + MIR SINE MIR 149 196 -66 960 226 9 14 chr9 65146763 65146975 -52715652 + MIR SINE MIR 26 236 -26 239 263 0 13 chr9 65148418 65148494 -52714133 + (TA)n Simple_repeat Simple_repeat 2 76 0 1134 191 54 89 chr9 65148541 65148603 -52714024 - MER33 DNA MER1_type -2261 324 261 1841 161 0 7 chr9 65148603 65148902 -52713725 - AluJb SINE Alu -13 299 3 1134 191 54 89 chr9 65148902 65149175 -52713452 - MER33 DNA MER1_type -2324 261 1 1399 179 17 7 chr9 65149643 65149933 -52712694 + L1MA8 LINE L1 5073 5365 -781 2072 112 0 0 chr9 65149933 65150218 -52712409 + AluSq SINE Alu 1 285 -28 243 0 0 0 chr9 65150218 65150245 -52712382 + (CA)n Simple_repeat Simple_repeat 2 28 0 2425 117 44 0 chr9 65150245 65150612 -52712015 + L1MA8 LINE L1 5437 5819 -472 1353 141 21 0 chr9 65150616 65150857 -52711770 + L1MA8 LINE L1 6044 6289 -2 198 71 0 0 chr9 65151961 65151989 -52710638 + (CTG)n Simple_repeat Simple_repeat 1 28 0 2160 95 0 0 chr9 65152057 65152352 -52710275 + AluSg SINE Alu 1 295 -15 504 185 22 0 chr9 65154508 65154600 -52708027 - MLT1D LTR MaLR -404 101 8 26 0 0 0 chr9 65154635 65154661 -52707966 + AT_rich Low_complexity Low_complexity 1 26 0 315 136 0 0 chr9 65155055 65155114 -52707513 + (TGGA)n Simple_repeat Simple_repeat 1 59 0 727 299 14 0 chr9 65156255 65156472 -52706155 + L1ME4a LINE L1 5480 5699 -422 531 242 140 41 chr9 65156526 65156840 -52705787 + L1ME4a LINE L1 5774 6118 -3 522 264 6 88 chr9 65157050 65157090 -52705537 + MER5B DNA MER1_type 7 49 -129 2081 118 3 0 chr9 65157090 65157394 -52705233 - AluSx SINE Alu -7 305 1 522 264 6 88 chr9 65157394 65157535 -52705092 + MER5B DNA MER1_type 49 173 -5 978 176 16 21 chr9 65157550 65157737 -52704890 - MER5A DNA MER1_type -1 188 3 222 324 36 101 chr9 65157909 65158050 -52704577 - MIR SINE MIR -12 250 125 2082 92 0 7 chr9 65158050 65158356 -52704271 + AluSx SINE Alu 1 304 0 222 324 36 101 chr9 65158356 65158432 -52704195 - MIR SINE MIR -137 125 46 252 238 0 0 chr9 65158700 65158763 -52703864 + (TG)n Simple_repeat Simple_repeat 1 63 0 1999 104 22 7 chr9 65159635 65159974 -52702653 - AluSx SINE Alu 0 343 1 2120 94 7 10 chr9 65159974 65160272 -52702355 - AluSx SINE Alu -15 297 1 1870 248 40 28 chr9 65160540 65161037 -52701590 + MLT1J LTR MaLR 1 503 -8 290 248 228 55 chr9 65161994 65162076 -52700551 + MER5A DNA MER1_type 14 81 -108 2256 155 68 0 chr9 65162076 65162475 -52700152 - MSTA LTR MaLR -1 427 2 290 248 228 55 chr9 65162475 65162537 -52700090 + MER5A DNA MER1_type 81 183 -6 663 54 0 0 chr9 65163381 65163473 -52699154 + (TG)n Simple_repeat Simple_repeat 2 93 0 344 275 38 38 chr9 65165490 65165621 -52697006 - MER5A DNA MER1_type -24 165 35 * 404 300 54 8 chr9 65165512 65165642 -52696985 + MER5A DNA MER1_type 52 187 -2 232 315 97 24 chr9 65165652 65165817 -52696810 - MER5B DNA MER1_type -1 177 1 231 302 179 11 chr9 65166561 65166740 -52695887 + Charlie8 DNA MER1_type 53 261 -2156 2379 69 0 3 chr9 65168580 65168883 -52693744 + AluY SINE Alu 1 302 -9 980 206 47 0 chr9 65168889 65169100 -52693527 + MIR SINE MIR 31 255 -7 346 275 14 72 chr9 65169362 65169500 -52693127 + MIR3 SINE MIR 47 176 -32 967 205 51 34 chr9 65170036 65170270 -52692357 + MSTD LTR MaLR 2 239 -157 927 232 0 19 chr9 65170290 65170497 -52692130 + MSTD LTR MaLR 194 396 0 229 288 65 50 chr9 65170501 65170640 -52691987 - MIR3 SINE MIR -61 147 7 761 243 102 65 chr9 65171015 65171418 -52691209 - MLT1H LTR MaLR -24 525 108 506 302 55 14 chr9 65172343 65172663 -52689964 + MLT1I LTR MaLR 22 403 -6 293 309 89 30 chr9 65173045 65173213 -52689414 + MLT1J LTR MaLR 325 502 -9 2451 44 0 0 chr9 65173359 65173655 -52688972 - AluY SINE Alu -15 296 1 1910 200 22 40 chr9 65173820 65173934 -52688693 + L1MB2 LINE L1 5725 5839 -332 2135 111 7 0 chr9 65173934 65174232 -52688395 + AluSx SINE Alu 1 300 -12 1910 200 22 40 chr9 65174232 65174572 -52688055 + L1MB2 LINE L1 5839 6171 0 2021 99 46 17 chr9 65174604 65174906 -52687721 + AluSx SINE Alu 1 311 -1 195 288 61 15 chr9 65175200 65175266 -52687361 + L2 LINE L2 3204 3272 0 755 234 75 0 chr9 65175349 65175537 -52687090 - MER3 DNA MER1_type -7 202 1 465 104 0 0 chr9 65175546 65175623 -52687004 + (CCCTA)n Simple_repeat Simple_repeat 2 78 0 397 280 71 0 chr9 65175677 65175826 -52686801 + MIR SINE MIR 102 262 0 1985 143 0 0 chr9 65176934 65177241 -52685386 - AluSx SINE Alu -5 307 1 659 237 23 17 chr9 65178529 65178702 -52683925 + MIR SINE MIR 60 233 -29 2378 66 3 7 chr9 65179104 65179409 -52683218 + AluSp SINE Alu 9 312 -1 2306 93 0 0 chr9 65181103 65181415 -52681212 + AluSx SINE Alu 1 312 0 290 333 54 0 chr9 65181420 65181531 -52681096 - L2 LINE L2 -15 3257 3141 1208 158 19 16 chr9 65181786 65181999 -52680628 + L1MB3 LINE L1 5936 6140 -40 1513 173 10 37 chr9 65181999 65182299 -52680328 + AluJo SINE Alu 1 292 -20 1208 158 19 16 chr9 65182299 65182339 -52680288 + L1MB3 LINE L1 6140 6178 -2 2374 65 0 0 chr9 65183453 65183747 -52678880 + AluSg SINE Alu 1 294 -16 1486 234 62 50 chr9 65183955 65184164 -52678463 + L1ME2 LINE L1 5641 5846 -318 1625 179 167 44 chr9 65184164 65184577 -52678050 + MLT1C LTR MaLR 1 464 -3 1486 234 62 50 chr9 65184577 65184871 -52677756 + L1ME2 LINE L1 5846 6150 -14 304 252 105 52 chr9 65184904 65185114 -52677513 + L1MC4 LINE L1 7821 8041 -1 3946 74 35 13 chr9 65185430 65185971 -52676656 + L1PA11 LINE L1 5622 6174 0 352 265 147 0 chr9 65186511 65186613 -52676014 - MIR SINE MIR -109 153 37 313 260 156 0 chr9 65186690 65186786 -52675841 + MIR SINE MIR 12 122 -140 1430 166 90 88 chr9 65186931 65187285 -52675342 + MLT2D LTR ERVL 4 361 -53 303 28 0 0 chr9 65187285 65187321 -52675306 + (CA)n Simple_repeat Simple_repeat 2 37 0 1430 166 90 88 chr9 65187321 65187376 -52675251 + MLT2D LTR ERVL 361 414 0 775 215 40 28 chr9 65187376 65187550 -52675077 - MER3 DNA MER1_type -33 176 1 189 0 0 0 chr9 65187623 65187644 -52674983 + (CAT)n Simple_repeat Simple_repeat 1 21 0 24 53 0 0 chr9 65187659 65187697 -52674930 + AT_rich Low_complexity Low_complexity 1 38 0 1849 172 0 0 chr9 65187729 65188025 -52674602 - AluJb SINE Alu -16 296 1 204 274 9 47 chr9 65188112 65188218 -52674409 + GA-rich Low_complexity Low_complexity 4 105 0 2082 198 119 4 chr9 65188274 65188760 -52673867 + MER74A LTR ERVL 15 556 -2 2305 90 7 0 chr9 65189055 65189345 -52673282 + AluSq SINE Alu 1 292 -21 278 326 21 0 chr9 65190351 65190446 -52672181 + (CATA)n Simple_repeat Simple_repeat 3 99 0 285 203 211 0 chr9 65192140 65192268 -52670359 + MIR SINE MIR 27 181 -81 396 284 119 35 chr9 65192465 65192666 -52669961 + MIR SINE MIR 45 262 0 1997 156 0 3 chr9 65193332 65193634 -52668993 - AluSx SINE Alu -11 301 1 2205 181 41 78 chr9 65194248 65194409 -52668218 - Tigger7 DNA MER2_type -2 2485 2320 2113 137 0 3 chr9 65194409 65194716 -52667911 + AluSx SINE Alu 1 306 -6 2205 181 41 78 chr9 65194716 65195182 -52667445 - Tigger7 DNA MER2_type -167 2320 1838 2183 104 42 0 chr9 65195182 65195469 -52667158 + AluSx SINE Alu 1 299 -13 2205 181 41 78 chr9 65195469 65195594 -52667033 - Tigger7 DNA MER2_type -649 1838 1 223 203 27 27 chr9 65195742 65195816 -52666811 + (TA)n Simple_repeat Simple_repeat 1 74 0 63 57 0 0 chr9 65195846 65195951 -52666676 + AT_rich Low_complexity Low_complexity 1 105 0 370 222 51 28 chr9 65197301 65197477 -52665150 + (CA)n Simple_repeat Simple_repeat 1 180 0 2157 109 3 3 chr9 65197615 65197917 -52664710 + AluSg SINE Alu 1 302 -8 231 234 112 37 chr9 65198919 65199026 -52663601 - L1ME4a LINE L1 0 6121 6007 25 0 0 0 chr9 65199145 65199170 -52663457 + AT_rich Low_complexity Low_complexity 1 25 0 2419 87 0 0 chr9 65199959 65200259 -52662368 + AluSx SINE Alu 4 303 -9 2179 112 0 0 chr9 65200938 65201225 -52661402 + AluSx SINE Alu 1 287 -25 230 308 9 37 chr9 65201687 65201794 -52660833 + (CATATA)n Simple_repeat Simple_repeat 5 108 0 511 261 23 28 chr9 65201960 65202136 -52660491 + L1MC4 LINE L1 7867 8041 -1 1596 221 33 0 chr9 65202418 65202748 -52659879 - MER58B DNA MER1_type 0 341 1 327 250 0 0 chr9 65205343 65205415 -52657212 - L2 LINE L2 -4 3309 3238 2607 158 18 11 chr9 65205517 65205961 -52656666 - MER50 LTR ERV1 -13 721 275 1691 83 0 9 chr9 65206009 65206226 -52656401 - AluSg/x SINE Alu -10 302 88 380 234 40 24 chr9 65206254 65206378 -52656249 - L2 LINE L2 -250 3063 2938 2432 97 0 0 chr9 65206383 65206694 -52655933 + AluSq SINE Alu 1 311 -2 1176 263 83 8 chr9 65208328 65208727 -52653900 + L1ME1 LINE L1 5726 6154 -12 758 187 0 15 chr9 65208740 65208874 -52653753 - FLAM_C SINE Alu 0 133 2 3102 122 2 2 chr9 65209851 65210311 -52652316 - L1PB1 LINE L1 0 6151 5692 249 258 32 21 chr9 65211173 65211266 -52651361 + L1P LINE L1 4954 5047 -1099 1879 172 0 10 chr9 65211301 65211598 -52651029 + AluJb SINE Alu 1 294 -18 785 168 99 8 chr9 65211674 65211842 -52650785 + L1MB4 LINE L1 6015 6185 0 769 245 141 27 chr9 65211850 65212380 -52650247 + L1MC4a LINE L1 5189 5787 -334 270 270 22 66 chr9 65212381 65212518 -52650109 + L1MC4a LINE L1 5811 5941 -1867 1842 143 106 52 chr9 65212742 65213148 -52649479 - MSTC LTR MaLR 0 428 1 224 339 25 17 chr9 65213470 65213588 -52649039 - L2 LINE L2 0 3272 3154 427 256 0 0 chr9 65213594 65213684 -52648943 - MER63D DNA MER1_type -1 1059 970 642 184 94 22 chr9 65213798 65214091 -52648536 - MER63D DNA MER1_type -627 434 51 220 174 0 43 chr9 65214094 65214140 -52648487 + (TATG)n Simple_repeat Simple_repeat 2 45 0 2275 99 0 50 chr9 65216473 65216795 -52645832 + AluSx SINE Alu 1 306 -6 285 239 51 43 chr9 65217775 65217892 -52644735 + LTR33 LTR ERVL 83 200 -321 413 305 117 5 chr9 65219148 65219371 -52643256 - L3 LINE CR1 -6 1571 1324 335 336 33 24 chr9 65219426 65219544 -52643083 + MIR SINE MIR 25 147 -115 870 224 114 0 chr9 65219544 65219745 -52642882 + MER58A DNA MER1_type 1 224 0 335 336 33 24 chr9 65219745 65219837 -52642790 + MIR SINE MIR 147 237 -25 385 334 84 48 chr9 65219881 65220273 -52642354 - L3 LINE CR1 -439 1138 733 978 145 4 133 chr9 65220802 65221051 -52641576 + MER20 DNA MER1_type 3 219 0 2232 98 10 20 chr9 65221954 65222251 -52640376 + AluSx SINE Alu 1 294 -18 978 182 35 0 chr9 65222678 65222848 -52639779 + FRAM SINE Alu 1 175 -1 2337 98 0 9 chr9 65222889 65223190 -52639437 + AluSx SINE Alu 1 300 -12 345 24 0 0 chr9 65223190 65223232 -52639395 + (CA)n Simple_repeat Simple_repeat 1 42 0 2337 98 0 9 chr9 65223232 65223245 -52639382 + AluSx SINE Alu 300 312 0 626 241 47 37 chr9 65223956 65224147 -52638480 - MIR SINE MIR -21 241 49 2401 80 7 0 chr9 65225241 65225541 -52637086 + AluSp SINE Alu 1 302 -11 2533 54 0 0 chr9 65226259 65226554 -52636073 + AluY SINE Alu 1 295 -16 2110 117 3 0 chr9 65226595 65226885 -52635742 + AluSx SINE Alu 7 297 -15 2206 89 29 0 chr9 65227398 65227679 -52634948 + AluSp SINE Alu 3 291 -22 189 294 49 78 chr9 65228742 65228844 -52633783 + MIR SINE MIR 21 119 -89 1993 131 7 14 chr9 65228909 65229199 -52633428 + AluSx SINE Alu 1 288 -24 2250 105 0 10 chr9 65229206 65229519 -52633108 + AluSg SINE Alu 1 310 0 1909 166 39 3 chr9 65229905 65230237 -52632390 - MER2 DNA MER2_type 0 344 1 248 280 0 27 chr9 65231278 65231353 -52631274 - L2 LINE L2 -11 3261 3189 22 35 0 0 chr9 65231440 65231469 -52631158 + AT_rich Low_complexity Low_complexity 1 29 0 815 205 7 7 chr9 65231472 65231623 -52631004 + FRAM SINE Alu 1 151 -15 296 148 16 0 chr9 65231623 65231684 -52630943 + (CATATA)n Simple_repeat Simple_repeat 5 66 0 251 302 121 20 chr9 65232912 65233061 -52629566 - MIR SINE MIR -78 184 21 2128 97 0 82 chr9 65233333 65233663 -52628964 - AluSg SINE Alu -7 303 1 323 276 8 67 chr9 65237392 65237526 -52625101 - L2 LINE L2 -38 3275 3150 1349 158 64 26 chr9 65237725 65237950 -52624677 + MER33 DNA MER1_type 2 244 -2341 2120 79 43 0 chr9 65237950 65238229 -52624398 - AluSc SINE Alu -18 291 1 1349 158 64 26 chr9 65238229 65238314 -52624313 + MER33 DNA MER1_type 244 324 0 2135 87 10 20 chr9 65238681 65238981 -52623646 - AluSq SINE Alu -16 297 1 186 381 31 0 chr9 65239391 65239488 -52623139 + MIR SINE MIR 12 111 -151 650 246 43 38 chr9 65239537 65239748 -52622879 + MLT1F1 LTR MaLR 1 212 -355 183 156 0 0 chr9 65239750 65239782 -52622845 + CT-rich Low_complexity Low_complexity 2 33 0 390 179 26 13 chr9 65239928 65240006 -52622621 + MLT1G1 LTR MaLR 507 585 -10 189 0 0 0 chr9 65240120 65240141 -52622486 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 328 269 66 33 chr9 65240152 65240305 -52622322 + MIR SINE MIR 102 259 -3 391 276 86 50 chr9 65240556 65240777 -52621850 - MLT1J1 LTR MaLR -52 394 166 2319 62 0 0 chr9 65240925 65241201 -52621426 + AluY SINE Alu 35 310 -1 300 319 168 0 chr9 65241476 65241595 -52621032 - L2 LINE L2 -10 3262 3124 704 280 89 25 chr9 65241673 65241998 -52620629 + LTR33 LTR ERVL 104 449 -72 250 119 0 0 chr9 65243976 65244018 -52618609 - MADE1 DNA Mariner -38 42 1 1546 197 32 26 chr9 65244750 65245060 -52617567 - AluJb SINE Alu 0 312 1 2306 77 13 3 chr9 65245243 65245543 -52617084 - AluSp SINE Alu -10 303 1 23 0 0 0 chr9 65246306 65246329 -52616298 + AT_rich Low_complexity Low_complexity 1 23 0 314 268 32 16 chr9 65246511 65246634 -52615993 + L1MEd LINE L1 13 137 -5982 2118 120 7 7 chr9 65246634 65246933 -52615694 + AluSx SINE Alu 1 299 -13 255 263 0 38 chr9 65247125 65247205 -52615422 + L1MEd LINE L1 461 537 -5582 470 296 39 22 chr9 65247245 65247475 -52615152 + L1MEd LINE L1 622 855 -5264 2556 55 7 0 chr9 65247609 65247917 -52614710 + AluY SINE Alu 1 310 -1 1934 170 3 0 chr9 65248101 65248412 -52614215 + AluJo SINE Alu 1 312 0 251 264 14 28 chr9 65248687 65248759 -52613868 + MIR SINE MIR 31 101 -107 930 210 12 0 chr9 65248907 65249069 -52613558 - FAM SINE Alu -16 169 6 5796 154 40 5 chr9 65249075 65250079 -52612548 - L1MC1 LINE L1 -6 6327 5289 394 282 20 7 chr9 65250163 65250312 -52612315 + MER103 DNA DNA 3 153 -13 2254 108 3 0 chr9 65250558 65250864 -52611763 + AluSc SINE Alu 1 307 -2 712 108 25 0 chr9 65251184 65251304 -52611323 + CT-rich Low_complexity Low_complexity 2 124 0 1500 159 40 53 chr9 65251988 65252290 -52610337 - AluJo SINE Alu -14 298 1 301 239 0 15 chr9 65353139 65353206 -52509421 - L3 LINE CR1 -2 1575 1510 183 129 0 0 chr9 65353738 65353769 -52508858 + (GGAGAA)n Simple_repeat Simple_repeat 5 35 0 207 0 0 0 chr9 65354597 65354620 -52508007 + (T)n Simple_repeat Simple_repeat 1 23 0 213 39 0 0 chr9 65354796 65354822 -52507805 + (CTCA)n Simple_repeat Simple_repeat 1 26 0 246 62 0 0 chr9 65355274 65355306 -52507321 + (TTTTC)n Simple_repeat Simple_repeat 4 35 0 26 0 0 0 chr9 65355836 65355862 -52506765 + AT_rich Low_complexity Low_complexity 1 26 0 385 221 79 21 chr9 65355935 65356075 -52506552 + L1ME LINE L1 5511 5658 -463 344 172 0 0 chr9 65356816 65356874 -52505753 - L2 LINE L2 0 3313 3256 206 360 65 26 chr9 65357142 65357295 -52505332 - L2 LINE L2 -75 3197 3039 472 126 137 0 chr9 65358435 65358530 -52504097 + MER53 DNA DNA 1 108 -81 189 0 0 0 chr9 65359288 65359309 -52503318 + (TG)n Simple_repeat Simple_repeat 2 22 0 1988 104 0 4 chr9 65359560 65359830 -52502797 + AluSg SINE Alu 1 269 -41 8703 169 8 28 chr9 65359843 65362520 -52500107 - L1P3 LINE L1 -3456 3005 321 2207 102 38 0 chr9 65362681 65362974 -52499653 - AluSp SINE Alu -7 306 3 1990 136 30 13 chr9 65363259 65363561 -52499066 + AluSx SINE Alu 1 307 -5 249 334 84 37 chr9 65364509 65364846 -52497781 + L2 LINE L2 2709 3096 -176 219 283 81 20 chr9 65364918 65365017 -52497610 - L2 LINE L2 -377 2936 2832 579 280 165 9 chr9 65365228 65365446 -52497181 + MIR SINE MIR 11 262 0 181 195 24 0 chr9 65365448 65365489 -52497138 + L2 LINE L2 3272 3313 0 315 309 41 0 chr9 65365491 65365588 -52497039 - MIR SINE MIR -55 153 53 282 333 39 31 chr9 65365643 65365772 -52496855 + L2 LINE L2 3127 3256 -16 22 56 0 0 chr9 65366854 65366890 -52495737 + AT_rich Low_complexity Low_complexity 1 36 0 1972 141 7 20 chr9 65367371 65367668 -52494959 - AluSx SINE Alu -12 300 8 2168 177 2 8 chr9 65368681 65369077 -52493550 + MER57A LTR ERV1 1 394 -9 1789 127 22 34 chr9 65369083 65369407 -52493220 - L1MA3 LINE L1 -8 6297 5978 1496 121 7 3 chr9 65369407 65369707 -52492920 + L1M1 LINE L1 5211 5511 -743 180 260 80 0 chr9 65369949 65369999 -52492628 + L2 LINE L2 3208 3261 -11 35 88 0 0 chr9 65370090 65370181 -52492446 + AT_rich Low_complexity Low_complexity 1 91 0 697 240 118 54 chr9 65370233 65370435 -52492192 - L1MC4a LINE L1 -1773 6035 5847 2233 44 34 27 chr9 65370435 65370729 -52491898 - AluY SINE Alu -15 296 1 697 240 118 54 chr9 65370729 65370967 -52491660 - L1MC4a LINE L1 -1961 5847 5567 718 313 17 29 chr9 65371191 65371600 -52491027 + L1P4 LINE L1 10 413 -7168 12982 237 33 11 chr9 65372150 65376747 -52485880 + L1P4 LINE L1 2224 6909 -695 278 304 0 13 chr9 65376876 65376955 -52485672 + MIR SINE MIR 179 256 -6 21 0 0 0 chr9 65377080 65377101 -52485526 + AT_rich Low_complexity Low_complexity 1 21 0 496 251 47 23 chr9 65377274 65377445 -52485182 - MLT1K LTR MaLR -17 571 397 262 226 113 102 chr9 65378219 65378493 -52484134 - L1ME4a LINE L1 -101 6020 5744 232 159 0 23 chr9 65378523 65378567 -52484060 - MIR SINE MIR -8 254 212 334 206 0 103 chr9 65378590 65378697 -52483930 - MLT1H LTR MaLR 0 549 454 1440 196 44 6 chr9 65379930 65380251 -52482376 + MER58B DNA MER1_type 1 333 -8 30 45 0 0 chr9 65380441 65380485 -52482142 + AT_rich Low_complexity Low_complexity 1 44 0 302 279 0 0 chr9 65384468 65384529 -52478098 + MIR SINE MIR 88 148 -60 2371 85 3 0 chr9 65385245 65385550 -52477077 - AluSq SINE Alu -7 306 1 234 0 0 0 chr9 65386089 65386115 -52476512 + (GA)n Simple_repeat Simple_repeat 1 26 0 552 312 13 42 chr9 65386697 65386874 -52475753 + MIR SINE MIR 18 188 -74 1056 190 92 71 chr9 65386874 65387211 -52475416 + MER2 DNA MER2_type 1 344 0 552 312 13 42 chr9 65387211 65387270 -52475357 + MIR SINE MIR 188 247 -15 1372 174 13 47 chr9 65387368 65387667 -52474960 - L1MB7 LINE L1 -10 6174 5886 21961 109 12 7 chr9 65388039 65391548 -52471079 + L1P LINE L1 1472 4998 -1148 6804 90 1 2 chr9 65391540 65392793 -52469834 + L1PA8A LINE L1 4878 6131 0 3765 143 16 88 chr9 65393494 65394243 -52468384 + L1MCa LINE L1 506 1200 -5226 255 167 21 0 chr9 65394260 65394308 -52468319 + L1MB7 LINE L1 6028 6076 -108 * 5148 187 26 14 chr9 65394298 65394801 -52467826 + L1MCa LINE L1 12 533 -5893 2376 75 0 33 chr9 65394801 65395106 -52467521 - AluY SINE Alu -16 295 1 5148 187 26 14 chr9 65395106 65395580 -52467047 + L1MCa LINE L1 533 1000 -5426 238 276 92 51 chr9 65395907 65396005 -52466622 - L2 LINE L2 -24 3248 3147 1606 161 20 40 chr9 65396927 65397225 -52465402 - AluJo SINE Alu -12 300 9 995 178 5 0 chr9 65397574 65397759 -52464868 - L1PA16 LINE L1 -20 6146 5961 568 152 125 0 chr9 65398461 65398573 -52464054 + L1PA16 LINE L1 6041 6166 0 208 206 69 147 chr9 65398693 65398795 -52463832 + L2 LINE L2 3165 3258 -55 * 221 313 47 31 chr9 65398794 65398922 -52463705 - L2 LINE L2 -820 2494 2365 2077 168 93 20 chr9 65398935 65399387 -52463240 + MER52A LTR ERV1 1271 1755 0 1486 195 200 26 chr9 65399462 65399892 -52462735 - MLT1D LTR MaLR 0 505 1 748 222 56 75 chr9 65400709 65400961 -52461666 - L1ME3A LINE L1 0 6170 5924 512 224 0 22 chr9 65401957 65402091 -52460536 + L1MA9 LINE L1 6157 6287 -25 814 89 9 0 chr9 65402105 65402217 -52460410 - AluSg/x SINE Alu -4 305 193 4231 129 53 88 chr9 65402838 65403652 -52458975 + LTR1 LTR ERV1 1 785 0 2454 53 17 3 chr9 65404119 65404420 -52458207 + AluY SINE Alu 1 305 -6 3726 158 38 56 chr9 65404421 65405131 -52457496 + L1MD1 LINE L1 5484 6180 -62 2239 123 0 0 chr9 65405131 65405431 -52457196 - AluSx SINE Alu -11 301 2 3726 158 38 56 chr9 65405431 65405493 -52457134 + L1MD1 LINE L1 6180 6242 0 384 150 217 17 chr9 65405529 65405649 -52456978 - Charlie5 DNA MER1_type -27 2585 2442 779 286 166 35 chr9 65405810 65406589 -52456038 + L2 LINE L2 2430 3299 -14 346 227 0 0 chr9 65406915 65406981 -52455646 + Charlie5 DNA MER1_type 1 66 -2546 225 206 16 16 chr9 65406981 65407044 -52455583 + Charlie5 DNA MER1_type 2428 2490 -122 360 0 0 0 chr9 65407046 65407086 -52455541 + (TA)n Simple_repeat Simple_repeat 2 41 0 2897 10 0 0 chr9 65407086 65407397 -52455230 - AluYa5 SINE Alu 0 311 1 21 0 0 0 chr9 65407445 65407466 -52455161 + AT_rich Low_complexity Low_complexity 1 21 0 568 261 153 0 chr9 65408084 65408241 -52454386 - MER5A DNA MER1_type 0 189 9 1672 184 80 31 chr9 65408438 65408852 -52453775 + MLT1C LTR MaLR 34 467 0 198 0 0 0 chr9 65408892 65408914 -52453713 + (A)n Simple_repeat Simple_repeat 1 22 0 5674 131 85 18 chr9 65409376 65410484 -52452143 + Tigger3b DNA MER2_type 1 1205 -26 2140 101 0 16 chr9 65411389 65411725 -52450902 + AluSx SINE Alu 1 312 0 1750 167 14 0 chr9 65412270 65412551 -52450076 - AluJo SINE Alu -17 295 11 234 0 0 0 chr9 65414021 65414047 -52448580 + (CCG)n Simple_repeat Simple_repeat 1 26 0 216 206 10 69 chr9 65414227 65414329 -52448298 + C-rich Low_complexity Low_complexity 4 99 0 241 311 33 22 chr9 65414431 65414611 -52448016 - L1M4 LINE L1 -1194 4952 4771 2264 84 0 29 chr9 65414617 65414926 -52447701 - AluSx SINE Alu -12 300 1 291 304 132 41 chr9 65415059 65415325 -52447302 + L2 LINE L2 2256 2545 -769 718 276 109 81 chr9 65415462 65415636 -52446991 + L2 LINE L2 2569 2737 -576 1654 124 31 59 chr9 65415636 65415926 -52446701 + AluJb SINE Alu 23 304 -8 718 276 109 81 chr9 65415926 65416445 -52446182 + L2 LINE L2 2737 3264 -49 553 254 0 15 chr9 65416653 65416787 -52445840 - MLT1K LTR MaLR -19 569 438 2380 98 0 3 chr9 65416800 65417106 -52445521 + AluSg SINE Alu 1 305 -5 188 272 12 49 chr9 65417153 65417234 -52445393 + MIR SINE MIR 169 246 -16 208 138 0 35 chr9 65417972 65418030 -52444597 + (TA)n Simple_repeat Simple_repeat 1 56 0 646 111 56 0 chr9 65418516 65418606 -52444021 + FRAM SINE Alu 69 163 -13 216 266 15 22 chr9 65419739 65419822 -52442805 + CT-rich Low_complexity Low_complexity 1 82 0 210 154 0 0 chr9 65420144 65420183 -52442444 + A-rich Low_complexity Low_complexity 1 39 0 282 192 82 27 chr9 65421226 65421299 -52441328 - LTR67 LTR ERVL -2 555 479 2082 169 67 30 chr9 65421309 65421740 -52440887 + MLT1D LTR MaLR 1 447 -58 4189 172 53 31 chr9 65421771 65422468 -52440159 - L1MB5 LINE L1 -7 6167 5445 2745 163 45 85 chr9 65422468 65423105 -52439522 + LTR9 LTR ERV1 1 612 0 4189 172 53 31 chr9 65423105 65423298 -52439329 - L1MB5 LINE L1 -729 5445 5258 315 118 39 0 chr9 65423343 65423394 -52439233 + MLT1D LTR MaLR 439 491 -14 525 201 26 101 chr9 65423994 65424183 -52438444 - MER112 DNA MER1_type -63 197 23 660 158 253 34 chr9 65424532 65424678 -52437949 + MER45A DNA AcHobo 1 178 0 2439 66 0 7 chr9 65426329 65426630 -52435997 + AluY SINE Alu 1 299 -12 299 158 35 0 chr9 65426873 65426930 -52435697 - Alu SINE Alu 0 300 242 776 251 112 35 chr9 65427195 65427542 -52435085 + MER115 DNA AcHobo 303 676 -17 2071 143 25 51 chr9 65428775 65429003 -52433624 - MLT1B LTR MaLR 0 390 175 1424 178 109 11 chr9 65429003 65429278 -52433349 - AluJb SINE Alu 0 302 1 2071 143 25 51 chr9 65429278 65429442 -52433185 - MLT1B LTR MaLR -215 175 8 255 366 12 0 chr9 65429450 65429532 -52433095 + MIR SINE MIR 7 89 -173 2250 102 3 0 chr9 65429926 65430220 -52432407 + AluSp SINE Alu 5 299 -14 2212 126 0 10 chr9 65430667 65430977 -52431650 - AluSx SINE Alu -5 307 1 492 164 238 0 chr9 65431293 65431415 -52431212 - L1ME1 LINE L1 -25 6141 5991 246 241 0 72 chr9 65431439 65431522 -52431105 - L1MC4 LINE L1 0 8042 7966 1498 263 100 47 chr9 65431531 65432280 -52430347 - L1MC4 LINE L1 -157 7885 7097 198 0 0 0 chr9 65432283 65432305 -52430322 + (TTCC)n Simple_repeat Simple_repeat 1 22 0 418 183 21 21 chr9 65432495 65432588 -52430039 - MST-int LTR MaLR -907 744 652 5256 65 6 3 chr9 65432590 65433223 -52429404 + L1PA7 LINE L1 5519 6153 -1 1687 187 6 35 chr9 65433438 65433754 -52428873 - AluJb SINE Alu -5 307 1 1003 248 151 8 chr9 65434434 65434785 -52427842 - MLT1J LTR MaLR -110 401 1 207 69 0 0 chr9 65434804 65434833 -52427794 + (A)n Simple_repeat Simple_repeat 1 29 0 1871 201 120 35 chr9 65435126 65435807 -52426820 + MER52A LTR ERV1 1 805 -473 3091 184 22 6 chr9 65435811 65436345 -52426282 + MER52A LTR ERV1 1211 1753 -2 528 330 133 34 chr9 65436354 65436978 -52425649 - L2 LINE L2 0 3272 2589 439 313 129 5 chr9 65437071 65437272 -52425355 + MIR SINE MIR 14 239 -23 1613 175 28 3 chr9 65437485 65437771 -52424856 + AluJo SINE Alu 13 305 -7 364 143 0 44 chr9 65437771 65437862 -52424765 + (GGAA)n Simple_repeat Simple_repeat 1 87 0 3900 182 46 13 chr9 65438183 65439030 -52423597 - L1P LINE L1 -789 5357 4483 * 4606 181 48 23 chr9 65439026 65439435 -52423192 + L1P LINE L1 3547 3945 -2201 1794 166 0 30 chr9 65439435 65439737 -52422890 + AluJb SINE Alu 1 293 -19 4606 181 48 23 chr9 65439737 65440266 -52422361 + L1P LINE L1 3945 4508 -1638 209 229 0 0 chr9 65440726 65440761 -52421866 - L2 LINE L2 -27 3245 3211 347 100 20 0 chr9 65441023 65441073 -52421554 - MER4A LTR ERV1 -351 313 263 600 122 10 10 chr9 65441073 65441171 -52421456 - MER4A LTR ERV1 -566 98 1 228 273 15 30 chr9 65442590 65442656 -52419971 - L2 LINE L2 -3 3269 3205 4361 112 38 9 chr9 65443458 65444125 -52418502 - L1MA3 LINE L1 -140 6165 5480 215 191 0 0 chr9 65444400 65444442 -52418185 + MIR SINE MIR 172 213 -49 311 325 95 8 chr9 65444470 65444596 -52418031 - L2 LINE L2 -38 3234 3098 180 234 0 0 chr9 65445541 65445588 -52417039 + (TG)n Simple_repeat Simple_repeat 1 47 0 2239 78 0 3 chr9 65445731 65446013 -52416614 - AluY SINE Alu -4 307 27 515 313 6 24 chr9 65446207 65446373 -52416254 + MIR3 SINE MIR 21 183 -25 260 68 0 23 chr9 65447008 65447052 -52415575 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2016 172 184 24 chr9 65447415 65447909 -52414718 - LTR48 LTR ERV1 -214 573 1 722 201 19 44 chr9 65447909 65448068 -52414559 + MLT1A2 LTR MaLR 196 350 -24 3181 195 76 14 chr9 65448078 65448825 -52413802 + MLT1A2-int LTR MaLR 2 887 -484 360 244 23 0 chr9 65448977 65449063 -52413564 + MLT-int LTR MaLR 686 773 -962 1682 224 46 35 chr9 65449206 65449576 -52413051 - MLT1-int LTR MaLR -85 1286 913 244 200 0 0 chr9 65449594 65449639 -52412988 + MLT1A2-int LTR MaLR 1691 1735 0 1586 188 29 44 chr9 65449639 65449979 -52412648 + MLT1A2 LTR MaLR 1 335 -39 181 297 10 69 chr9 65450436 65450515 -52412112 - MIR3 SINE MIR -10 198 125 1692 223 35 30 chr9 65450515 65450887 -52411740 - MLT1A2 LTR MaLR 0 374 1 181 297 10 69 chr9 65450887 65450908 -52411719 - MIR3 SINE MIR -83 125 104 391 313 138 6 chr9 65451748 65451908 -52410719 - MIR3 SINE MIR -10 198 18 1011 113 0 0 chr9 65451952 65452103 -52410524 - L1MA8 LINE L1 -381 5910 5760 281 216 46 60 chr9 65452132 65452274 -52410353 - MER34 LTR ERV1 -377 165 1 2158 72 83 10 chr9 65453665 65453955 -52408672 - AluY SINE Alu 0 311 1 1107 176 11 0 chr9 65454695 65454871 -52407756 - MER45A DNA AcHobo 0 178 1 353 306 70 65 chr9 65455313 65455512 -52407115 - MLT1H LTR MaLR -256 299 100 662 307 198 10 chr9 65455514 65455807 -52406820 + LTR16B LTR ERVL 1 348 -116 1894 124 33 0 chr9 65455831 65456105 -52406522 - AluSx SINE Alu 0 312 30 414 125 0 0 chr9 65456105 65456161 -52406466 - AluS SINE Alu -255 63 8 362 196 54 54 chr9 65456185 65456277 -52406350 + LTR16B LTR ERVL 373 464 0 * 535 207 82 15 chr9 65456277 65456411 -52406216 - MLT1H LTR MaLR -404 145 3 757 312 25 35 chr9 65456411 65456696 -52405931 + MLT1K LTR MaLR 68 349 -239 1113 218 62 49 chr9 65456737 65456860 -52405767 - MLT1E LTR MaLR 0 593 473 1693 150 8 0 chr9 65456860 65457127 -52405500 - AluSq SINE Alu -13 300 32 1113 218 62 49 chr9 65457127 65457311 -52405316 - MLT1E LTR MaLR -120 473 282 1009 162 18 36 chr9 65457416 65457638 -52404989 + L1MCa LINE L1 1303 1520 -4906 515 266 107 43 chr9 65458983 65459216 -52403411 + MIR SINE MIR 15 262 0 3016 256 62 18 chr9 65459540 65460471 -52402156 + L1MDa LINE L1 22 1075 -5465 2648 70 0 0 chr9 65460473 65460789 -52401838 + L1PA7 LINE L1 5825 6140 -14 1062 286 51 44 chr9 65460898 65461469 -52401158 + L1ME LINE L1 5236 5808 -313 2336 80 0 19 chr9 65461478 65461789 -52400838 + AluY SINE Alu 1 305 -6 214 182 65 13 chr9 65461864 65461941 -52400686 + (TA)n Simple_repeat Simple_repeat 1 81 0 269 185 15 0 chr9 65462025 65462090 -52400537 + (TA)n Simple_repeat Simple_repeat 1 66 0 601 197 229 16 chr9 65462586 65462769 -52399858 - L1ME LINE L1 -583 5583 5362 1001 213 57 29 chr9 65462787 65463102 -52399525 + L1ME LINE L1 5026 5349 -797 535 207 16 0 chr9 65464056 65464177 -52398450 - Zaphod DNA AcHobo -2711 1320 1198 2316 185 135 0 chr9 65464319 65464762 -52397865 - MLT1D LTR MaLR -2 503 1 613 234 15 0 chr9 65464996 65465133 -52397494 - MER103 DNA DNA -15 151 13 221 316 41 31 chr9 65465760 65465858 -52396769 - L3 LINE CR1 -4 1573 1475 254 256 0 70 chr9 65466032 65466118 -52396509 - MIR SINE MIR -1 261 182 2393 65 3 3 chr9 65466118 65466412 -52396215 - AluY SINE Alu -17 294 1 1023 99 0 0 chr9 65466430 65466561 -52396066 - AluSg1 SINE Alu -178 131 1 439 262 72 44 chr9 65466658 65466846 -52395781 - MIR SINE MIR -23 239 42 20176 77 15 1 chr9 65467185 65469774 -52392853 + HERVL LTR ERVL 58 2680 -2974 11875 36 3 0 chr9 65469876 65471277 -52391350 - L1P LINE L1 -1504 4642 3238 5256 89 14 8 chr9 65471272 65471990 -52390637 - L1P LINE L1 -5424 722 1 * 2433 253 50 48 chr9 65472026 65472190 -52390437 - L1M4 LINE L1 -1872 4274 4112 1711 187 3 0 chr9 65472190 65472479 -52390148 - AluJb SINE Alu -22 290 1 2433 253 50 48 chr9 65472479 65472578 -52390049 - L1M4 LINE L1 -2034 4112 4015 2337 84 0 0 chr9 65472578 65472862 -52389765 - AluSc SINE Alu -20 289 6 2433 253 50 48 chr9 65472862 65473531 -52389096 - L1M4 LINE L1 -2131 4015 3339 29 0 0 0 chr9 65473548 65473577 -52389050 + AT_rich Low_complexity Low_complexity 1 29 0 2395 107 25 33 chr9 65473600 65473963 -52388664 - THE1B LTR MaLR -2 362 3 2588 72 3 3 chr9 65473965 65474297 -52388330 - THE1B-int LTR MaLR 0 1580 1249 3401 184 20 9 chr9 65474441 65475104 -52387523 - L1 LINE L1 -1974 5591 4922 561 154 0 11 chr9 65475098 65475189 -52387438 - L1MDa LINE L1 -2011 5554 5465 * 23084 132 23 25 chr9 65475176 65479104 -52383523 - L1 LINE L1 -3632 3933 12 309 213 156 33 chr9 65479106 65479228 -52383399 - L1MDa LINE L1 -2802 4763 4627 2470 200 18 32 chr9 65479389 65479634 -52382993 - L1MDa LINE L1 -3327 4238 3991 1483 114 131 86 chr9 65479634 65479924 -52382703 - AluSx SINE Alu -9 303 1 2470 200 18 32 chr9 65479924 65480450 -52382177 - L1MDa LINE L1 -3574 3991 3482 2083 128 7 0 chr9 65480450 65480739 -52381888 - AluSx SINE Alu -19 293 3 2470 200 18 32 chr9 65480739 65480855 -52381772 - L1MDa LINE L1 -4083 3482 3366 519 126 0 0 chr9 65480860 65480955 -52381672 + (TG)n Simple_repeat Simple_repeat 2 96 0 2733 173 35 21 chr9 65480955 65481534 -52381093 - L1MDa LINE L1 -4216 3349 2763 6088 107 7 42 chr9 65481537 65482525 -52380102 - SVA Other Other -2 1384 432 4602 96 29 4 chr9 65482544 65483232 -52379395 - SVA Other Other -612 774 70 5610 84 24 61 chr9 65483332 65484528 -52378099 - SVA Other Other -518 868 34 812 159 41 0 chr9 65484529 65484674 -52377953 + L1MB5 LINE L1 6024 6174 0 897 158 0 8 chr9 65484686 65484819 -52377808 + FLAM_C SINE Alu 1 132 -1 225 218 0 0 chr9 65484819 65484868 -52377759 + A-rich Low_complexity Low_complexity 7 55 0 196 351 0 0 chr9 65484941 65484998 -52377629 - MIR SINE MIR -78 130 74 704 279 78 41 chr9 65486067 65486294 -52376333 - L1MC4 LINE L1 -166 7876 7634 2040 110 23 13 chr9 65486294 65486595 -52376032 - AluSx SINE Alu -7 305 2 704 279 78 41 chr9 65486595 65486661 -52375966 - L1MC4 LINE L1 -408 7634 7572 1654 207 45 132 chr9 65486665 65487241 -52375386 - MLT1E LTR MaLR -4 589 64 1061 232 81 19 chr9 65487321 65488165 -52374462 - L1MC4 LINE L1 -502 7540 6479 866 202 26 47 chr9 65489427 65489620 -52373007 + MER5A DNA MER1_type 1 189 0 17560 99 13 6 chr9 65489902 65492667 -52369960 - L1P3 LINE L1 -552 5602 2828 1514 213 58 26 chr9 65492771 65493152 -52369475 - L1M4 LINE L1 -793 5353 4961 586 204 0 0 chr9 65493175 65493278 -52369349 + MER58 DNA MER1_type 2318 2420 0 216 281 8 83 chr9 65493331 65493452 -52369175 - L2 LINE L2 -4 3309 3198 1814 138 0 44 chr9 65494077 65494375 -52368252 - AluJo SINE Alu -22 290 6 268 246 73 45 chr9 65494398 65494633 -52367994 - MLT1J LTR MaLR 0 511 232 211 122 24 24 chr9 65494642 65494683 -52367944 + MER5A DNA MER1_type 35 75 -114 258 286 165 8 chr9 65494789 65494922 -52367705 - MLT1J LTR MaLR -331 180 27 217 289 0 0 chr9 65495016 65495068 -52367559 - MER5A DNA MER1_type -10 179 128 2376 86 17 0 chr9 65495224 65495525 -52367102 - AluSx SINE Alu -6 306 1 461 301 83 23 chr9 65495593 65495859 -52366768 + L1MC4 LINE L1 7457 7738 -304 1487 233 80 50 chr9 65495966 65496482 -52366145 + LTR29 LTR ERV1 92 622 0 1116 160 58 84 chr9 65496548 65496773 -52365854 - MER20 DNA MER1_type 0 219 1 369 265 20 0 chr9 65497450 65497552 -52365075 + MER33 DNA MER1_type 2 105 -219 2420 80 3 0 chr9 65497558 65497857 -52364770 - AluSp SINE Alu -2 311 12 1773 139 7 21 chr9 65497928 65498209 -52364418 - AluJb SINE Alu -26 286 10 281 46 58 161 chr9 65498222 65498309 -52364318 + MER33 DNA MER1_type 160 237 -87 827 257 82 12 chr9 65498340 65498585 -52364042 + MLT1K LTR MaLR 173 434 -154 692 278 11 6 chr9 65498758 65498938 -52363689 - MLT1H1 LTR MaLR -374 181 1 1512 33 0 17 chr9 65499447 65499628 -52362999 + AluY SINE Alu 1 178 -133 243 0 0 0 chr9 65499730 65499757 -52362870 + (TA)n Simple_repeat Simple_repeat 1 27 0 2268 84 3 0 chr9 65500288 65500599 -52362028 + AluSp SINE Alu 1 312 0 2139 108 7 3 chr9 65503115 65503411 -52359216 - AluSx SINE Alu -15 297 1 378 200 0 38 chr9 65504376 65504456 -52358171 - AluS SINE Alu -226 77 1 409 279 99 60 chr9 65504644 65504845 -52357782 + MIR SINE MIR 27 235 -27 2402 64 40 0 chr9 65505098 65505396 -52357231 - AluY SINE Alu -1 310 1 447 234 70 121 chr9 65505588 65505861 -52356766 + MER102a DNA MER1_type 72 330 0 2022 113 65 0 chr9 65506529 65506804 -52355823 - AluSx SINE Alu -19 293 1 335 271 58 83 chr9 65509552 65509987 -52352640 + HAL1 LINE L1 1074 1497 -1010 1665 128 8 0 chr9 65511396 65511639 -52350988 + AluSq SINE Alu 69 313 0 23 54 0 0 chr9 65511970 65512007 -52350620 + AT_rich Low_complexity Low_complexity 1 37 0 339 256 174 18 chr9 65514609 65514828 -52347799 - MIR SINE MIR -8 254 2 2069 111 11 0 chr9 65517943 65518222 -52344405 + AluSq SINE Alu 2 283 -30 292 270 157 38 chr9 65518691 65518876 -52343751 - MLT1K LTR MaLR -235 353 147 2387 81 0 0 chr9 65520440 65520737 -52341890 + AluSc SINE Alu 1 297 -12 345 339 186 0 chr9 65520892 65521075 -52341552 + MIR SINE MIR 17 233 -29 1212 428 3 13 chr9 65521415 65521721 -52340906 + AluJo SINE Alu 1 303 -9 331 101 56 101 chr9 65521736 65521825 -52340802 - L1M4 LINE L1 -981 5165 5081 2189 141 0 0 chr9 65521938 65522243 -52340384 + AluSx SINE Alu 1 305 -7 225 177 38 76 chr9 65522524 65522603 -52340024 + L2 LINE L2 2704 2779 -535 218 167 0 0 chr9 65522666 65522702 -52339925 + (TGGG)n Simple_repeat Simple_repeat 2 37 0 227 222 0 0 chr9 65528202 65528247 -52334380 + MER63A DNA MER1_type 131 175 -35 264 59 0 0 chr9 65528502 65528536 -52334091 + (TG)n Simple_repeat Simple_repeat 2 35 0 570 318 68 19 chr9 65529404 65529712 -52332915 + LTR16C LTR ERVL 169 491 0 2158 119 10 16 chr9 65530031 65530341 -52332286 + AluSx SINE Alu 1 308 -4 1054 249 73 41 chr9 65531036 65531449 -52331178 + MLT1J2 LTR MaLR 6 431 -19 22 0 0 0 chr9 65531496 65531518 -52331109 + AT_rich Low_complexity Low_complexity 1 22 0 755 321 61 17 chr9 65532421 65532881 -52329746 + L2 LINE L2 2554 3037 -276 537 110 0 0 chr9 65533027 65533109 -52329518 + (TGGA)n Simple_repeat Simple_repeat 3 84 0 185 128 0 26 chr9 65534319 65534358 -52328269 + (CATG)n Simple_repeat Simple_repeat 3 40 0 195 278 56 14 chr9 65534765 65534837 -52327790 - MIR SINE MIR -6 256 182 572 185 84 8 chr9 65535227 65535346 -52327281 - FLAM_C SINE Alu -15 128 1 780 205 86 65 chr9 65535431 65535709 -52326918 - MARNA DNA Mariner -160 426 143 12442 114 77 75 chr9 65536167 65537200 -52325427 + Tigger1 DNA MER2_type 168 1198 -1220 531 210 101 8 chr9 65537200 65537319 -52325308 + FLAM_C SINE Alu 1 130 -13 12442 114 77 75 chr9 65537319 65538414 -52324213 + Tigger1 DNA MER2_type 1198 2418 0 700 238 11 21 chr9 65538626 65538815 -52323812 + L1MC4a LINE L1 6346 6532 -1276 247 280 0 0 chr9 65538815 65538865 -52323762 + L1MC3 LINE L1 6678 6727 -1058 * 1779 203 42 13 chr9 65538858 65539243 -52323384 + L1MD3 LINE L1 6787 7182 -813 2287 184 49 72 chr9 65539297 65539906 -52322721 - LTR9 LTR ERV1 0 612 18 342 267 113 104 chr9 65540257 65540737 -52321890 - L2 LINE L2 -6 3307 2824 1701 123 0 16 chr9 65540940 65541183 -52321444 + AluSc SINE Alu 70 308 -1 1770 159 0 33 chr9 65541297 65541598 -52321029 + AluJo SINE Alu 1 291 -21 205 331 138 39 chr9 65541744 65542228 -52320399 - L2 LINE L2 -338 2976 2445 439 275 23 30 chr9 65543186 65543317 -52319310 - MIR SINE MIR -102 160 31 834 239 106 18 chr9 65544082 65544308 -52318319 + MIR SINE MIR 2 247 -15 244 275 43 0 chr9 65544348 65544417 -52318210 - MIR SINE MIR -3 259 188 297 289 0 0 chr9 65544655 65544731 -52317896 + MIR SINE MIR 86 162 -46 396 174 188 49 chr9 65546356 65546500 -52316127 - MER103 DNA DNA 0 166 3 34 65 0 0 chr9 65547190 65547252 -52315375 + AT_rich Low_complexity Low_complexity 1 62 0 21 0 0 0 chr9 65547454 65547475 -52315152 + AT_rich Low_complexity Low_complexity 1 21 0 441 307 107 8 chr9 65548012 65548406 -52314221 - L1ME4a LINE L1 -73 6048 5616 333 303 92 9 chr9 65548949 65549058 -52313569 - L2 LINE L2 -4 3268 3151 22 0 0 0 chr9 65549213 65549235 -52313392 + AT_rich Low_complexity Low_complexity 1 22 0 1632 180 10 17 chr9 65549424 65549724 -52312903 + AluJo SINE Alu 6 303 -9 186 194 28 0 chr9 65549732 65549768 -52312859 + L2 LINE L2 3220 3256 -16 24 32 0 0 chr9 65550564 65550595 -52312032 + AT_rich Low_complexity Low_complexity 1 31 0 816 98 8 0 chr9 65550633 65550756 -52311871 - L1PA15 LINE L1 -3 6162 6039 2252 100 3 0 chr9 65551010 65551301 -52311326 + AluSc SINE Alu 3 294 -15 240 35 0 0 chr9 65551685 65551714 -52310913 + (T)n Simple_repeat Simple_repeat 1 29 0 23 0 0 0 chr9 65553144 65553167 -52309460 + AT_rich Low_complexity Low_complexity 1 23 0 35 83 0 0 chr9 65553812 65553896 -52308731 + AT_rich Low_complexity Low_complexity 1 84 0 507 244 96 0 chr9 65554299 65554434 -52308193 - MIR SINE MIR -72 190 43 273 222 281 24 chr9 65554551 65554718 -52307909 + MIR SINE MIR 40 249 -13 465 218 149 19 chr9 65554718 65555130 -52307497 - L1MEc LINE L1 -4078 2318 1833 233 167 0 0 chr9 65555120 65555168 -52307459 + L1MEc LINE L1 2255 2302 -4094 * 1608 132 42 100 chr9 65555167 65555577 -52307050 + L1MA8 LINE L1 5903 6288 -3 2364 214 35 24 chr9 65555582 65555941 -52306686 + L1MEc LINE L1 2243 2615 -3600 2234 63 53 3 chr9 65555941 65556225 -52306402 - AluY SINE Alu -13 298 1 2364 214 35 24 chr9 65556225 65556544 -52306083 + L1MEc LINE L1 2615 2929 -3286 246 319 109 14 chr9 65556672 65556810 -52305817 + L2 LINE L2 2641 2791 -523 405 294 119 0 chr9 65556889 65557015 -52305612 + L2 LINE L2 3129 3269 -3 22 0 0 0 chr9 65557022 65557044 -52305583 + AT_rich Low_complexity Low_complexity 1 22 0 1562 109 11 78 chr9 65558124 65558478 -52304149 - MER61C LTR ERV1 -10 424 1 2269 91 0 3 chr9 65558506 65558804 -52303823 - AluSq SINE Alu -16 297 1 519 118 69 0 chr9 65559348 65559450 -52303177 - L1MA8 LINE L1 -2 6289 6181 294 378 53 68 chr9 65560206 65560529 -52302098 + L2 LINE L2 2936 3253 -19 1701 118 98 21 chr9 65561375 65561662 -52300965 - AluSx SINE Alu -3 309 1 1441 121 5 36 chr9 65561832 65561998 -52300629 + AluSg/x SINE Alu 89 248 -64 8700 53 2 8 chr9 65561998 65562906 -52299721 - MER11C LTR ERVK 0 1071 170 2332 85 0 3 chr9 65562906 65563200 -52299427 - AluY SINE Alu -18 293 1 8700 53 2 8 chr9 65563200 65563369 -52299258 - MER11C LTR ERVK -901 170 1 1441 121 5 36 chr9 65563369 65563426 -52299201 + AluSg/x SINE Alu 248 305 -7 511 284 59 30 chr9 65563501 65563737 -52298890 - MIR SINE MIR 0 262 20 493 204 17 108 chr9 65564726 65564902 -52297725 - L1MD3 LINE L1 -1074 6921 6762 715 228 132 36 chr9 65566155 65566374 -52296253 + MIR SINE MIR 2 241 -21 222 308 326 5 chr9 65566775 65566996 -52295631 + L2 LINE L2 2489 2780 -534 909 274 9 14 chr9 65567512 65567735 -52294892 + MIR SINE MIR 33 254 -8 345 325 109 39 chr9 65568007 65568207 -52294420 + L2 LINE L2 2547 2732 -540 2381 75 0 0 chr9 65568207 65568499 -52294128 + AluY SINE Alu 1 292 -19 345 325 109 39 chr9 65568499 65568781 -52293846 + L2 LINE L2 2732 3056 -216 277 195 230 11 chr9 65568805 65568892 -52293735 + L2 LINE L2 3200 3305 -8 520 264 90 14 chr9 65568966 65569110 -52293517 + L2 LINE L2 3118 3272 0 217 385 42 30 chr9 65570629 65570795 -52291832 + L3b LINE CR1 1105 1272 -311 392 231 224 8 chr9 65570805 65570939 -52291688 - MIR SINE MIR -9 253 91 694 231 63 80 chr9 65571030 65571297 -52291330 + MLT1I LTR MaLR 98 361 -48 2009 184 124 28 chr9 65571297 65571764 -52290863 - MLT2B2 LTR ERVL -3 512 1 694 231 63 80 chr9 65571764 65571795 -52290832 + MLT1I LTR MaLR 361 391 -18 36 40 0 0 chr9 65572063 65572113 -52290514 + AT_rich Low_complexity Low_complexity 1 50 0 375 245 85 47 chr9 65572315 65572527 -52290100 - LTR16C LTR ERVL -6 485 266 219 139 0 0 chr9 65572773 65572809 -52289818 + (A)n Simple_repeat Simple_repeat 1 36 0 1884 231 28 20 chr9 65573187 65573723 -52288904 - L1ME1 LINE L1 -9 6157 5618 1409 234 45 28 chr9 65574390 65574852 -52287775 + LTR38 LTR ERV1 87 556 0 28 29 0 0 chr9 65575108 65575143 -52287484 + AT_rich Low_complexity Low_complexity 1 35 0 432 229 61 0 chr9 65575791 65575922 -52286705 + MER5C DNA MER1_type 128 266 -58 358 331 49 22 chr9 65576230 65576414 -52286213 + MER5A DNA MER1_type 1 189 0 493 291 117 17 chr9 65576688 65576987 -52285640 - MLT1J2 LTR MaLR -121 329 1 2513 57 0 0 chr9 65578475 65578775 -52283852 - AluY SINE Alu -11 300 1 241 270 54 34 chr9 65579216 65579364 -52283263 + L1ME LINE L1 5648 5798 -323 22 56 0 0 chr9 65579376 65579412 -52283215 + AT_rich Low_complexity Low_complexity 1 36 0 2057 104 0 0 chr9 65582369 65582657 -52279970 - L1PA7 LINE L1 -6 6148 5861 19405 117 20 88 chr9 65582657 65586773 -52275854 - L1P LINE L1 -2298 3848 12 1546 147 26 18 chr9 65586787 65587060 -52275567 - AluJb SINE Alu -13 299 25 605 199 59 50 chr9 65587875 65588096 -52274531 + MER112 DNA MER1_type 6 228 -32 228 283 58 67 chr9 65588989 65589109 -52273518 + L2 LINE L2 3153 3271 -1 234 0 0 0 chr9 65589862 65589888 -52272739 + (A)n Simple_repeat Simple_repeat 1 26 0 474 290 93 23 chr9 65590889 65591103 -52271524 + MIR SINE MIR 34 262 0 1536 226 43 39 chr9 65591335 65591800 -52270827 + MLT1C LTR MaLR 1 467 0 500 339 74 41 chr9 65592184 65592697 -52269930 + L2 LINE L2 2079 2608 -706 231 333 0 0 chr9 65592741 65592801 -52269826 + L2 LINE L2 3174 3233 -39 2483 79 13 0 chr9 65592889 65593194 -52269433 + AluSx SINE Alu 1 309 -3 276 291 152 0 chr9 65593270 65593349 -52269278 - L2 LINE L2 0 3272 3182 1804 76 0 9 chr9 65793718 65793967 -52068660 + AluSc SINE Alu 59 305 0 2798 80 3 13 chr9 65794271 65794648 -52067979 - LTR19B-int LTR ERV1 -3618 1968 1596 * 5845 136 33 3 chr9 65794646 65795552 -52067075 - LTR19B-int LTR ERV1 -6786 933 1 3965 102 47 40 chr9 65795552 65795666 -52066961 - LTR19B LTR ERV1 0 580 468 2709 26 0 3 chr9 65795666 65795968 -52066659 - AluY SINE Alu -10 301 1 3965 102 47 40 chr9 65795968 65796429 -52066198 - LTR19B LTR ERV1 -112 468 1 377 186 103 21 chr9 65796484 65796581 -52066046 + MLT1H LTR MaLR 445 549 0 508 271 132 47 chr9 65796778 65797269 -52065358 + L1ME LINE L1 3572 4104 -2042 559 223 33 70 chr9 65797364 65797606 -52065021 + L1ME LINE L1 4463 4695 -1451 254 272 35 35 chr9 65797620 65797734 -52064893 + L1ME LINE L1 4784 4897 -1249 576 280 93 34 chr9 65798062 65798134 -52064493 + L1ME LINE L1 5325 5391 -730 2186 112 7 3 chr9 65798134 65798430 -52064197 + AluSx SINE Alu 1 297 -15 576 280 93 34 chr9 65798430 65798706 -52063921 + L1ME LINE L1 5391 5689 -432 1859 167 3 6 chr9 65799044 65799356 -52063271 + AluJb SINE Alu 1 311 -1 577 174 174 8 chr9 65800410 65800542 -52062085 + Charlie4a DNA MER1_type 1 154 -354 480 219 27 87 chr9 65800542 65800699 -52061928 + Charlie4a DNA MER1_type 197 343 -1618 2147 123 3 7 chr9 65800699 65800999 -52061628 - AluSx SINE Alu -13 299 1 480 219 27 87 chr9 65800999 65801024 -52061603 + Charlie4a DNA MER1_type 343 368 -140 1552 182 66 68 chr9 65801026 65801406 -52061221 + MLT1B LTR MaLR 1 379 -11 642 232 28 0 chr9 65801412 65801554 -52061073 + Charlie4a DNA MER1_type 363 508 0 250 276 4 7 chr9 65801632 65801709 -52060918 + MLT1J2 LTR MaLR 71 126 -324 289 273 70 35 chr9 65801874 65802017 -52060610 + MLT1J LTR MaLR 362 509 -2 1882 117 0 106 chr9 65802253 65802594 -52060033 - AluJb SINE Alu -7 305 1 468 348 70 22 chr9 65802887 65803117 -52059510 + MIR SINE MIR 17 257 -5 2160 102 3 3 chr9 65803128 65803440 -52059187 - AluSp SINE Alu 0 313 2 1440 96 5 0 chr9 65803495 65803683 -52058944 - AluSg/x SINE Alu -9 301 113 2252 99 3 7 chr9 65805441 65805735 -52056892 - AluSg SINE Alu -17 293 1 2216 121 3 0 chr9 65806739 65807045 -52055582 - AluSx SINE Alu -5 307 1 270 169 34 0 chr9 65808935 65808994 -52053633 - L2 LINE L2 -249 3064 3004 222 241 203 13 chr9 65810959 65811060 -52051567 - MER5A DNA MER1_type -26 152 29 26 30 0 0 chr9 65811554 65811587 -52051040 + AT_rich Low_complexity Low_complexity 1 33 0 511 262 141 59 chr9 65812254 65812510 -52050117 + MLT1J LTR MaLR 158 434 -77 403 279 37 22 chr9 65814239 65814375 -52048252 - MER46C DNA MER2_type -13 325 188 241 143 0 79 chr9 65815630 65815693 -52046934 + (CCCCCG)n Simple_repeat Simple_repeat 3 60 0 24 0 0 0 chr9 65815707 65815731 -52046896 + GC_rich Low_complexity Low_complexity 1 24 0 669 134 15 22 chr9 65816664 65816798 -52045829 + FLAM_A SINE Alu 1 133 0 231 268 31 21 chr9 65816995 65817092 -52045535 + L1ME4a LINE L1 5956 6053 -68 448 130 24 69 chr9 65817313 65817425 -52045202 - MLT1A2 LTR MaLR -221 153 60 1247 99 90 30 chr9 65817536 65817705 -52044922 - AluSx SINE Alu -99 213 29 4236 101 13 0 chr9 65817705 65818251 -52044376 + MER41A LTR ERV1 2 554 0 1247 99 90 30 chr9 65818251 65818282 -52044345 - AluSx SINE Alu -283 29 1 278 280 21 32 chr9 65818347 65818440 -52044187 + L2 LINE L2 3005 3096 -217 613 66 0 0 chr9 65818539 65818615 -52044012 + Alu SINE Alu 224 299 -13 362 244 78 0 chr9 65818617 65818707 -52043920 + L2 LINE L2 3155 3251 -21 275 195 6 42 chr9 65818872 65818957 -52043670 - Tigger5 DNA MER2_type -1 2322 1 352 251 72 54 chr9 65818981 65819006 -52043621 - L1MC5 LINE L1 -77 7884 7861 1194 157 76 18 chr9 65819006 65819229 -52043398 + MER46A DNA MER2_type 1 236 0 352 251 72 54 chr9 65819229 65819370 -52043257 - L1MC5 LINE L1 -100 7861 7715 2229 107 3 0 chr9 65819567 65819866 -52042761 - AluSp SINE Alu -13 300 1 320 296 72 20 chr9 65819948 65820100 -52042527 - L1MC5 LINE L1 -470 7491 7332 363 228 13 0 chr9 65820134 65820213 -52042414 - MIR SINE MIR -182 80 1 1745 179 135 18 chr9 65820389 65820419 -52042208 + MLT1D LTR MaLR 1 26 -479 1309 189 131 49 chr9 65820419 65820785 -52041842 - MSTD LTR MaLR 0 396 1 1745 179 135 18 chr9 65820785 65821140 -52041487 + MLT1D LTR MaLR 26 431 -74 467 202 50 25 chr9 65821175 65821294 -52041333 - L1M4 LINE L1 -2109 4037 3916 553 289 58 36 chr9 65821420 65821920 -52040707 + L1MEd LINE L1 922 1523 -967 716 276 42 14 chr9 65822272 65822489 -52040138 + MLT1H LTR MaLR 22 244 -305 3999 114 52 2 chr9 65822569 65823121 -52039506 - LTR19B LTR ERV1 0 580 1 1590 108 17 4 chr9 65823122 65823354 -52039273 - HERVFH19I LTR ERV1 -1 7718 7484 * 8607 190 46 49 chr9 65823337 65824125 -52038502 - HUERS-P3b LTR ERV1 -332 6894 6105 5504 107 0 52 chr9 65824125 65824862 -52037765 - L1PA3 LINE L1 0 6155 5457 8607 190 46 49 chr9 65824862 65826038 -52036589 - HUERS-P3b LTR ERV1 -1121 6105 4927 216 0 0 0 chr9 65826038 65826062 -52036565 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 8607 190 46 49 chr9 65826062 65826599 -52036028 - HUERS-P3b LTR ERV1 -2299 4927 4500 2378 71 0 3 chr9 65826599 65826919 -52035708 - AluY SINE Alu 0 311 1 8607 190 46 49 chr9 65826919 65826977 -52035650 - HUERS-P3b LTR ERV1 -2726 4500 4443 2261 80 3 3 chr9 65827173 65827461 -52035166 - AluSg1 SINE Alu -21 288 1 2217 108 3 3 chr9 65827608 65827915 -52034712 - AluSg SINE Alu -3 307 1 210 71 0 0 chr9 65828766 65828794 -52033833 + (T)n Simple_repeat Simple_repeat 1 28 0 1169 81 0 7 chr9 65829239 65829387 -52033240 - AluSg SINE Alu -163 147 1 1575 242 112 83 chr9 65829761 65830475 -52032152 - MER21B LTR ERV1 -109 754 20 684 206 106 118 chr9 65830521 65830824 -52031803 - MSTD LTR MaLR -4 392 94 2321 73 0 32 chr9 65830824 65831137 -52031490 + AluY SINE Alu 1 303 -8 684 206 106 118 chr9 65831137 65831230 -52031397 - MSTD LTR MaLR -302 94 1 257 295 76 9 chr9 65831264 65831369 -52031258 + HERVL LTR ERVL 4155 4266 -1388 267 323 61 0 chr9 65831977 65832076 -52030551 + L2 LINE L2 3168 3272 0 408 40 0 0 chr9 65833393 65833443 -52029184 + (TG)n Simple_repeat Simple_repeat 1 50 0 1750 141 8 0 chr9 65833443 65833691 -52028936 - AluSq SINE Alu -33 280 31 4531 126 287 89 chr9 65833694 65835104 -52027523 - pTR5 LTR ERV1 0 2438 750 250 122 122 0 chr9 65835104 65835145 -52027482 - AluSq SINE Alu -257 46 1 1626 218 81 19 chr9 65835169 65835541 -52027086 - MSTD LTR MaLR -1 395 1 480 292 71 30 chr9 65835555 65835723 -52026904 - MER5A DNA MER1_type -8 181 7 1861 176 13 7 chr9 65836417 65836723 -52025904 + AluJb SINE Alu 5 312 0 23 0 0 0 chr9 65837009 65837032 -52025595 + AT_rich Low_complexity Low_complexity 1 23 0 430 257 26 18 chr9 65837146 65837259 -52025368 + MER81 DNA DNA 1 114 0 266 335 77 66 chr9 65837366 65837781 -52024846 - L2 LINE L2 -62 3251 2700 338 98 20 0 chr9 65838275 65838326 -52024301 - AluSq SINE Alu -250 52 1 521 215 41 8 chr9 65838328 65838449 -52024178 + MER63 DNA MER1_type 1 751 -85 22 0 0 0 chr9 65838676 65838698 -52023929 + AT_rich Low_complexity Low_complexity 1 22 0 221 239 0 30 chr9 65839107 65839174 -52023453 + A-rich Low_complexity Low_complexity 1 65 0 14583 211 48 22 chr9 65839210 65839915 -52022712 + L1MA8 LINE L1 2 687 -5668 1972 128 73 25 chr9 65839915 65840273 -52022354 + THE1C LTR MaLR 1 375 0 11255 102 42 8 chr9 65840273 65841801 -52020826 + THE1C-int LTR MaLR 1 1580 0 2087 134 62 20 chr9 65841801 65842159 -52020468 + THE1C LTR MaLR 1 373 -2 14583 211 48 22 chr9 65842159 65842639 -52019988 + L1MA8 LINE L1 687 1153 -5202 1803 175 7 0 chr9 65842639 65842931 -52019696 - AluJb SINE Alu -18 294 1 14583 211 48 22 chr9 65842931 65844637 -52017990 + L1MA8 LINE L1 1153 2814 -3541 2014 151 3 10 chr9 65844637 65844940 -52017687 + AluSx SINE Alu 1 301 -11 2107 106 40 7 chr9 65844940 65845242 -52017385 + AluSx SINE Alu 1 312 0 14583 211 48 22 chr9 65844941 65847819 -52014808 + L1MA8 LINE L1 2814 5617 -738 213 65 0 0 chr9 65847819 65847850 -52014777 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 14583 211 48 22 chr9 65847850 65847978 -52014649 + L1MA8 LINE L1 5617 5740 -615 1549 208 0 14 chr9 65847978 65848271 -52014356 + AluJo SINE Alu 5 293 -19 14583 211 48 22 chr9 65848271 65849050 -52013577 + L1MA8 LINE L1 5740 6204 -151 777 111 8 0 chr9 65849051 65849168 -52013459 + L1PB2 LINE L1 5361 5478 -673 1912 140 11 0 chr9 65849172 65849444 -52013183 + AluSx SINE Alu 1 275 -37 203 0 0 36 chr9 65849448 65849476 -52013151 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 4788 101 12 8 chr9 65849517 65850188 -52012439 + L1PB2 LINE L1 5468 6141 -10 983 111 28 124 chr9 65850201 65850337 -52012290 + L1MA9 LINE L1 6117 6226 -86 1825 138 40 0 chr9 65850337 65850612 -52012015 + AluJb SINE Alu 1 286 -26 983 111 28 124 chr9 65850612 65850692 -52011935 + L1MA9 LINE L1 6226 6312 0 754 134 70 7 chr9 65850829 65850971 -52011656 + MER5A DNA MER1_type 13 163 -26 24 32 0 0 chr9 65851090 65851121 -52011506 + AT_rich Low_complexity Low_complexity 1 31 0 1926 179 26 0 chr9 65852231 65852572 -52010055 - L1MB3 LINE L1 -18 6165 5816 1398 145 18 0 chr9 65852587 65852808 -52009819 - AluJb SINE Alu -16 296 72 1836 190 50 28 chr9 65852808 65853266 -52009361 - L1MB3 LINE L1 -815 5331 4864 472 263 51 0 chr9 65853471 65853589 -52009038 - L2 LINE L2 -2 3311 3188 37 62 0 0 chr9 65853692 65853757 -52008870 + AT_rich Low_complexity Low_complexity 1 65 0 682 193 0 57 chr9 65853806 65853946 -52008681 - FLAM_A SINE Alu -1 132 1 233 295 0 0 chr9 65854532 65854593 -52008034 + MIR SINE MIR 82 142 -120 286 225 138 25 chr9 65854642 65854722 -52007905 - MLT1G1 LTR MaLR -60 535 447 510 182 168 7 chr9 65854757 65854900 -52007727 - MLT1G1 LTR MaLR -227 368 203 454 275 34 32 chr9 65855322 65855503 -52007124 + MIR SINE MIR 41 219 -43 21 0 0 0 chr9 65856209 65856230 -52006397 + AT_rich Low_complexity Low_complexity 1 21 0 1815 206 39 31 chr9 65856348 65856788 -52005839 - L1M4 LINE L1 -385 5799 5364 1657 146 32 58 chr9 65856788 65856965 -52005662 - AluJo SINE Alu -11 301 121 1719 178 3 3 chr9 65856965 65857251 -52005376 + AluJb SINE Alu 1 286 -26 315 65 0 0 chr9 65857254 65857300 -52005327 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 1657 146 32 58 chr9 65857300 65857427 -52005200 - AluJo SINE Alu -193 119 1 1815 206 39 31 chr9 65857427 65858374 -52004253 - L1M4 LINE L1 -820 5364 4358 702 221 33 62 chr9 65858384 65858628 -52003999 - MLT1D LTR MaLR -176 329 93 395 91 70 21 chr9 65858737 65858880 -52003747 + (CA)n Simple_repeat Simple_repeat 1 150 0 554 73 45 45 chr9 65858892 65859071 -52003556 + (CA)n Simple_repeat Simple_repeat 1 179 0 340 145 64 17 chr9 65859154 65859326 -52003301 + (CA)n Simple_repeat Simple_repeat 1 180 0 441 107 53 41 chr9 65859351 65859601 -52003026 + (CA)n Simple_repeat Simple_repeat 1 253 0 382 130 45 26 chr9 65859616 65859770 -52002857 + (CA)n Simple_repeat Simple_repeat 1 157 0 320 173 40 17 chr9 65859809 65859982 -52002645 + (CA)n Simple_repeat Simple_repeat 1 177 0 431 234 0 0 chr9 65860901 65860978 -52001649 + MLT1J LTR MaLR 73 149 -362 277 218 55 91 chr9 65861105 65861215 -52001412 + MLT1J LTR MaLR 406 511 0 461 17 17 0 chr9 65861701 65861759 -52000868 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 492 32 0 0 chr9 65862191 65862253 -52000374 + (TAGA)n Simple_repeat Simple_repeat 3 64 0 2111 191 10 72 chr9 65863382 65863896 -51998731 + MER31A LTR ERV1 1 482 -3 2081 105 28 0 chr9 65864332 65864617 -51998010 - AluSx SINE Alu -14 298 6 1059 234 100 121 chr9 65865059 65865752 -51996875 + LTR8A LTR ERV1 1 678 -49 21 0 0 0 chr9 65865864 65865885 -51996742 + AT_rich Low_complexity Low_complexity 1 21 0 1913 180 9 56 chr9 65865991 65866378 -51996249 + MLT2D LTR ERVL 6 373 -41 249 33 0 0 chr9 65866378 65866408 -51996219 + (CA)n Simple_repeat Simple_repeat 2 31 0 1913 180 9 56 chr9 65866408 65866447 -51996180 + MLT2D LTR ERVL 373 412 -2 2339 92 0 0 chr9 65867270 65867562 -51995065 - AluSc SINE Alu -17 292 1 607 258 74 55 chr9 65868212 65868538 -51994089 + MLT1K LTR MaLR 210 541 -47 24 41 0 20 chr9 65868538 65868563 -51994064 + AT_rich Low_complexity Low_complexity 1 26 -22 3099 150 8 6 chr9 65868563 65869056 -51993571 - L1MB3 LINE L1 -2 6181 5688 24 41 0 20 chr9 65869056 65869079 -51993548 + AT_rich Low_complexity Low_complexity 26 48 0 4332 134 37 17 chr9 65869095 65869803 -51992824 + MER50 LTR ERV1 1 722 -12 3868 137 36 24 chr9 65869850 65870520 -51992107 + MER4D LTR ERV1 1 678 -225 581 216 47 0 chr9 65870508 65870522 -51992105 + MER4E LTR ERV1 612 624 -142 * 1755 112 27 0 chr9 65870522 65870780 -51991847 + AluSg SINE Alu 44 308 -2 581 216 47 0 chr9 65870780 65870913 -51991714 + MER4E LTR ERV1 624 766 0 698 140 52 37 chr9 65870913 65871049 -51991578 - L1MD1 LINE L1 -41 6201 6064 4477 171 49 34 chr9 65871090 65871192 -51991435 - L1MD2 LINE L1 -144 6215 6116 4030 104 24 2 chr9 65871192 65871732 -51990895 - MER41A LTR ERV1 0 554 3 4477 171 49 34 chr9 65871732 65872634 -51989993 - L1MD2 LINE L1 -243 6116 5198 229 228 122 76 chr9 65873105 65873342 -51989285 + L1M4 LINE L1 2114 2361 -3785 542 260 240 5 chr9 65873575 65873771 -51988856 - MIR SINE MIR 0 262 21 448 309 67 24 chr9 65873773 65874233 -51988394 + L1M4 LINE L1 3032 3511 -2635 498 264 7 7 chr9 65874382 65874402 -51988225 - L1MA10 LINE L1 0 6334 6315 3040 213 79 35 chr9 65874402 65875221 -51987406 - L1ME1 LINE L1 -12 6154 5300 415 216 21 0 chr9 65875221 65875318 -51987309 + MLT1K LTR MaLR 492 590 0 1631 197 33 25 chr9 65875553 65875918 -51986709 - MLT1A2 LTR MaLR 0 374 7 1764 153 73 0 chr9 65877590 65877890 -51984737 - MER7A DNA MER2_type -26 320 1 36 62 0 0 chr9 65879592 65879656 -51982971 + AT_rich Low_complexity Low_complexity 1 64 0 421 288 51 0 chr9 65879834 65879999 -51982628 + MIR SINE MIR 15 190 -65 2806 220 73 30 chr9 65880000 65881307 -51981320 - L1MD2 LINE L1 -487 6266 4898 2071 128 3 0 chr9 65881307 65881596 -51981031 - AluSq SINE Alu -23 290 1 2806 220 73 30 chr9 65881596 65881631 -51980996 - L1MD2 LINE L1 -1855 4898 4866 4078 228 57 49 chr9 65881664 65883105 -51979522 - L1MD2 LINE L1 -1810 4730 3278 4570 212 53 71 chr9 65883111 65883354 -51979273 - L1MD2 LINE L1 -3694 2846 2600 2156 131 3 3 chr9 65883354 65883666 -51978961 - AluSx SINE Alu 0 312 1 4570 212 53 71 chr9 65883666 65885489 -51977138 - L1MD2 LINE L1 -3940 2600 808 1027 260 14 21 chr9 65885838 65886123 -51976504 - L1MD2 LINE L1 -6257 283 1 768 282 69 53 chr9 65887992 65888424 -51974203 + MLT1K LTR MaLR 149 587 -1 1735 203 49 25 chr9 65888637 65889002 -51973625 + MLT1A2 LTR MaLR 1 374 0 808 236 66 17 chr9 65889577 65889818 -51972809 - MER58B DNA MER1_type -15 326 74 1485 293 139 25 chr9 65889831 65890697 -51971930 - HAL1 LINE L1 -1532 975 12 293 292 129 18 chr9 65890955 65891126 -51971501 + MLT1J LTR MaLR 109 298 -213 225 289 44 53 chr9 65891198 65891312 -51971315 + MLT1J LTR MaLR 397 509 -2 1468 159 106 5 chr9 65892257 65892550 -51970077 - MLT1B LTR MaLR 0 374 52 204 145 43 34 chr9 65892571 65892688 -51969939 + (TG)n Simple_repeat Simple_repeat 2 119 0 2256 115 0 0 chr9 65895551 65895856 -51966771 - AluSx SINE Alu -6 306 2 3559 148 98 9 chr9 65896486 65897162 -51965465 - L1MB4 LINE L1 0 6180 5445 3958 166 53 25 chr9 65898964 65899138 -51963489 - L1MD1 LINE L1 -26 6216 6048 1627 81 5 5 chr9 65899138 65899347 -51963280 - AluY SINE Alu -17 294 86 3958 166 53 25 chr9 65899347 65900101 -51962526 - L1MD1 LINE L1 -194 6048 5194 2263 93 7 7 chr9 65900306 65900606 -51962021 - AluSg1 SINE Alu -9 300 1 211 221 29 29 chr9 65900745 65900813 -51961814 + (CATATA)n Simple_repeat Simple_repeat 3 70 0 1708 234 24 31 chr9 65900846 65901191 -51961436 - LTR40c LTR ERVL -44 421 78 2356 98 3 0 chr9 65901191 65901487 -51961140 - AluSq SINE Alu -16 297 1 1708 234 24 31 chr9 65901487 65901565 -51961062 - LTR40c LTR ERVL -387 78 1 2349 95 3 0 chr9 65901740 65902044 -51960583 - AluY SINE Alu -2 309 5 24 0 0 0 chr9 65902094 65902118 -51960509 + AT_rich Low_complexity Low_complexity 1 24 0 518 234 88 16 chr9 65902284 65902476 -51960151 + MIR SINE MIR 1 206 -56 639 123 19 9 chr9 65902494 65902600 -51960027 + MLT1A1 LTR MaLR 1 107 -258 7251 98 193 82 chr9 65902603 65904130 -51958497 - pTR5 LTR ERV1 0 2438 743 1275 173 43 16 chr9 65904130 65904385 -51958242 + MLT1A1 LTR MaLR 104 365 0 2052 139 49 27 chr9 65904636 65905003 -51957624 - THE1C LTR MaLR 0 375 1 527 271 48 48 chr9 65906052 65906262 -51956365 + MER63A DNA MER1_type 1 210 0 384 139 89 25 chr9 65906437 65906516 -51956111 + LTR8 LTR ERV1 1 84 -607 809 226 40 6 chr9 65906623 65906800 -51955827 - LTR42 LTR ERVL -312 183 1 1242 209 65 19 chr9 65906800 65907157 -51955470 - MLT2B1 LTR ERVL -52 463 60 1630 156 45 7 chr9 65907709 65908017 -51954610 - L1MA9 LINE L1 -30 6282 5963 529 16 0 0 chr9 65908234 65908298 -51954329 + L1PA3 LINE L1 6089 6152 -3 23 0 0 0 chr9 65908298 65908321 -51954306 + AT_rich Low_complexity Low_complexity 1 23 0 1463 151 24 12 chr9 65908371 65908622 -51954005 + MLT1A1 LTR MaLR 112 365 0 2067 110 104 24 chr9 65908802 65909139 -51953488 - THE1B LTR MaLR 0 364 1 447 269 99 19 chr9 65909536 65909748 -51952879 + L1MC4 LINE L1 7814 8042 0 2399 137 40 16 chr9 65910622 65911047 -51951580 - L1MA9 LINE L1 -428 5755 5321 216 67 0 0 chr9 65911049 65911079 -51951548 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 7564 29 0 15 chr9 65911079 65912510 -51950117 - L1PA4 LINE L1 -24 6131 4722 7467 203 32 94 chr9 65912507 65913159 -51949468 - L1MA9 LINE L1 -810 5336 4645 * 2430 139 3 3 chr9 65913159 65913532 -51949095 - L1PB3 LINE L1 0 6154 5782 7467 203 32 94 chr9 65913532 65914153 -51948474 - L1MA9 LINE L1 -1501 4645 3987 303 28 0 0 chr9 65914153 65914189 -51948438 + (TG)n Simple_repeat Simple_repeat 2 37 0 7467 203 32 94 chr9 65914189 65914768 -51947859 - L1MA9 LINE L1 -2159 3987 3670 2543 117 70 7 chr9 65914768 65915171 -51947456 + MSTA LTR MaLR 1 428 0 7467 203 32 94 chr9 65915171 65915776 -51946851 - L1MA9 LINE L1 -2476 3670 3029 5961 150 11 2 chr9 65915801 65916762 -51945865 - L1MA6 LINE L1 0 6300 5331 314 73 0 73 chr9 65916762 65916817 -51945810 + MSTB1 LTR MaLR 1 51 -381 558 193 118 0 chr9 65916821 65916940 -51945687 + AluJo SINE Alu 2 134 -178 2124 175 63 0 chr9 65916955 65917320 -51945307 + MSTB1 LTR MaLR 43 430 -2 6001 181 17 6 chr9 65917321 65918507 -51944120 - L1MA6 LINE L1 -810 5336 4138 3111 232 17 6 chr9 65918503 65919314 -51943313 - L1M4 LINE L1 -3105 3041 2222 * 797 241 0 73 chr9 65919373 65919564 -51943063 + MER8 DNA MER2_type 2 178 -61 630 218 41 0 chr9 65919608 65919778 -51942849 - Charlie4a DNA MER1_type -132 376 200 891 273 110 22 chr9 65920428 65920783 -51941844 + MLT1I LTR MaLR 16 401 -8 692 273 94 16 chr9 65921920 65922176 -51940451 - L1MB7 LINE L1 0 6184 5909 421 290 14 36 chr9 65922191 65922329 -51940298 - HAL1 LINE L1 -2095 412 278 711 224 117 0 chr9 65922360 65922539 -51940088 + MIR SINE MIR 33 232 -30 308 273 36 0 chr9 65922901 65923011 -51939616 + MER5A DNA MER1_type 74 187 -2 204 265 43 19 chr9 65923264 65923426 -51939201 + (TA)n Simple_repeat Simple_repeat 2 167 0 25 31 0 0 chr9 65923562 65923594 -51939033 + AT_rich Low_complexity Low_complexity 1 32 0 295 213 32 0 chr9 65923594 65923688 -51938939 + (TA)n Simple_repeat Simple_repeat 2 98 0 443 193 0 0 chr9 65923690 65923773 -51938854 - FRAM SINE Alu -26 150 68 270 338 113 12 chr9 65924083 65924323 -51938304 + L1ME LINE L1 5575 5838 -283 448 248 0 0 chr9 65924806 65924939 -51937688 + L1MA7 LINE L1 6159 6291 0 329 294 150 6 chr9 65925151 65925331 -51937296 + MIR SINE MIR 33 238 -24 539 273 111 71 chr9 65926535 65926986 -51935641 + LTR33 LTR ERVL 50 518 -3 2459 119 89 2 chr9 65927438 65927832 -51934795 - MSTA LTR MaLR 0 428 1 2485 138 38 40 chr9 65928945 65929170 -51933457 - MSTB LTR MaLR 0 426 202 657 0 0 0 chr9 65929170 65929243 -51933384 + (TTTTA)n Simple_repeat Simple_repeat 2 74 0 2107 105 7 0 chr9 65929248 65929534 -51933093 - AluSq SINE Alu -25 288 1 2485 138 38 40 chr9 65929534 65929729 -51932898 - MSTB LTR MaLR -228 198 1 827 155 42 12 chr9 65930070 65930238 -51932389 + MLT1D LTR MaLR 332 504 -1 201 74 0 0 chr9 65931182 65931209 -51931418 + (T)n Simple_repeat Simple_repeat 1 27 0 189 0 0 0 chr9 65932407 65932428 -51930199 + (T)n Simple_repeat Simple_repeat 1 21 0 201 182 0 0 chr9 65932897 65932930 -51929697 + T-rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr9 65933408 65933436 -51929191 + GC_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr9 65933561 65933591 -51929036 + GC_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr9 65936096 65936125 -51926502 + AT_rich Low_complexity Low_complexity 1 29 0 426 144 40 8 chr9 65937997 65938122 -51924505 + (CA)n Simple_repeat Simple_repeat 1 129 0 264 255 55 76 chr9 65938552 65938697 -51923930 + MIR3 SINE MIR 30 171 -37 588 93 0 0 chr9 65939159 65939256 -51923371 + (TG)n Simple_repeat Simple_repeat 1 97 0 1129 158 19 47 chr9 65940783 65940998 -51921629 + MER2 DNA MER2_type 1 209 -136 23 78 0 0 chr9 65941007 65941058 -51921569 + AT_rich Low_complexity Low_complexity 1 51 0 1903 159 3 0 chr9 65941112 65941402 -51921225 - AluJb SINE Alu -21 291 1 1605 180 110 61 chr9 65942621 65943110 -51919517 - MLT2B1 LTR ERVL -1 519 7 2327 82 7 0 chr9 65943290 65943582 -51919045 - AluSp SINE Alu -19 294 1 719 249 158 0 chr9 65944664 65944929 -51917698 + MER63B DNA MER1_type 1 307 -129 328 233 27 0 chr9 65945384 65945457 -51917170 - L2 LINE L2 -5 3308 3234 229 316 154 8 chr9 65945784 65945901 -51916726 - L2 LINE L2 -609 2705 2572 237 33 0 0 chr9 65946480 65946510 -51916117 + (CA)n Simple_repeat Simple_repeat 2 31 0 482 280 70 28 chr9 65946524 65946810 -51915817 - L1MC4a LINE L1 -1861 5947 5650 359 192 92 23 chr9 65946981 65947111 -51915516 - L1M4 LINE L1 -2154 3992 3854 243 307 129 51 chr9 65947114 65947492 -51915135 + L2 LINE L2 2694 3091 -181 1811 168 18 72 chr9 65947667 65948008 -51914619 + MLT1A1 LTR MaLR 1 320 -45 12714 22 0 0 chr9 65948008 65950171 -51912456 - L1PA2 LINE L1 0 6155 3993 1811 168 18 72 chr9 65950171 65950215 -51912412 + MLT1A1 LTR MaLR 320 365 0 2283 139 78 34 chr9 65950255 65950665 -51911962 - MSTA LTR MaLR 0 428 1 196 291 86 60 chr9 65951394 65951545 -51911082 - L2 LINE L2 -251 3062 2908 3647 61 11 9 chr9 65951790 65952233 -51910394 + MLT2A1 LTR ERVL 1 444 0 371 310 62 0 chr9 65952255 65952384 -51910243 - L3 LINE CR1 -258 1319 1183 322 284 62 49 chr9 65952875 65953100 -51909527 + L1MC4a LINE L1 5733 5960 -1848 * 2274 222 24 74 chr9 65953097 65953842 -51908785 + L1M4 LINE L1 2523 3229 -2917 1546 161 23 43 chr9 65953842 65954141 -51908486 + AluJo SINE Alu 3 295 -17 2274 222 24 74 chr9 65954141 65954180 -51908447 + L1M4 LINE L1 3229 3268 -2878 1305 214 92 46 chr9 65954189 65954557 -51908070 - MLT1D LTR MaLR 0 505 116 3871 180 53 48 chr9 65954557 65955336 -51907291 - LTR39 LTR ERV1 0 783 1 1305 214 92 46 chr9 65955336 65955360 -51907267 - MLT1D LTR MaLR -389 116 95 1563 218 50 32 chr9 65955376 65955752 -51906875 - MLT1F LTR MaLR -120 422 40 1306 103 4 103 chr9 65957448 65957701 -51904926 + MER30 DNA MER1_type 3 230 0 311 360 22 0 chr9 65957750 65957886 -51904741 + MIR SINE MIR 113 251 -11 267 143 143 66 chr9 65958463 65958554 -51904073 + L1ME4a LINE L1 6006 6103 -18 418 260 77 34 chr9 65958624 65958832 -51903795 - L1ME3 LINE L1 -1 6161 5945 260 225 45 0 chr9 65959844 65959933 -51902694 - L1ME4a LINE L1 -5 6116 6024 316 197 0 0 chr9 65960021 65960082 -51902545 - L1ME4a LINE L1 -267 5854 5794 300 145 0 14 chr9 65960076 65960145 -51902482 + L1MB7 LINE L1 5255 5322 -824 * 1590 186 93 9 chr9 65960157 65960491 -51902136 - MLT1A1 LTR MaLR 0 365 4 267 111 0 0 chr9 65960493 65960529 -51902098 + L1MB7 LINE L1 5330 5365 -818 1224 186 0 5 chr9 65960529 65960749 -51901878 + AluJb SINE Alu 84 302 -10 4514 158 16 29 chr9 65960749 65961495 -51901132 + L1MB7 LINE L1 5359 6246 -88 3167 193 20 0 chr9 65961495 65962034 -51900593 - MER44D DNA MER2_type 0 605 1 4514 158 16 29 chr9 65962034 65962122 -51900505 + L1MB7 LINE L1 6246 6334 0 218 333 32 24 chr9 65962831 65962954 -51899673 - MIR SINE MIR -119 143 20 189 171 29 0 chr9 65963122 65963157 -51899470 + MIR SINE MIR 218 253 -9 337 293 40 33 chr9 65964534 65964684 -51897943 + L2 LINE L2 3160 3310 -3 28 0 0 0 chr9 65964700 65964728 -51897899 + AT_rich Low_complexity Low_complexity 1 28 0 1446 236 48 26 chr9 65964743 65965120 -51897507 - L1ME3 LINE L1 -324 5846 5462 414 260 65 123 chr9 65965401 65965499 -51897128 - HAL1 LINE L1 -742 1765 1663 237 33 0 0 chr9 65965499 65965529 -51897098 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1755 118 0 4 chr9 65965531 65965777 -51896850 - AluSg SINE Alu -30 280 36 414 260 65 123 chr9 65965777 65965981 -51896646 - HAL1 LINE L1 -845 1662 1499 550 81 58 0 chr9 65965981 65966068 -51896559 - L1MB3 LINE L1 -7 6176 6085 414 260 65 123 chr9 65966068 65966272 -51896355 - HAL1 LINE L1 -1008 1499 1285 328 216 27 0 chr9 65966467 65966541 -51896086 + MLT1L LTR MaLR 125 200 -415 22 70 0 0 chr9 65967196 65967239 -51895388 + AT_rich Low_complexity Low_complexity 1 43 0 485 222 37 0 chr9 65967431 65967539 -51895088 + MER5A DNA MER1_type 75 186 -3 274 303 49 49 chr9 65967432 65967554 -51895073 - MER5A DNA MER1_type -64 125 4 * 4262 93 4 12 chr9 65968354 65968913 -51893714 + MER41A LTR ERV1 1 554 0 1072 154 77 60 chr9 65968913 65969190 -51893437 + MER41A-int LTR ERV1 1 289 -5657 1822 115 83 4 chr9 65969196 65969474 -51893153 - AluSx SINE Alu -12 300 1 964 140 0 7 chr9 65969474 65969610 -51893017 - AluSq/x SINE Alu -176 137 1 4129 150 49 1 chr9 65969610 65970258 -51892369 + MER41A-int LTR ERV1 181 859 -5087 2639 153 16 15 chr9 65970241 65970827 -51891800 + MER41A-int LTR ERV1 648 3585 -4231 * 7662 120 44 23 chr9 65970825 65972084 -51890543 + MER41A-int LTR ERV1 1898 3182 -2764 * 7936 93 22 11 chr9 65972078 65973178 -51889449 + MER41A-int LTR ERV1 4833 5944 -2 4064 101 4 0 chr9 65973178 65973722 -51888905 + MER41A LTR ERV1 1 546 -8 2077 161 122 10 chr9 65974669 65975054 -51887573 + MSTA LTR MaLR 1 428 0 4187 122 75 0 chr9 65975066 65975657 -51886970 - MER41B LTR ERV1 0 635 1 11826 102 10 10 chr9 65975657 65977344 -51885283 - MER41B-int LTR ERV1 0 5946 4260 3794 132 13 18 chr9 65977342 65977970 -51884657 - MER41B-int LTR ERV1 -2254 3692 3068 * 37957 61 2 3 chr9 65977970 65983549 -51879078 - L1PA5 LINE L1 -6 6148 578 5988 123 22 18 chr9 65983553 65984457 -51878170 - MER41B-int LTR ERV1 -2872 3074 2167 1121 85 0 7 chr9 65984453 65984606 -51878021 - MER41B-int LTR ERV1 -3929 2017 1866 * 2558 149 37 20 chr9 65984593 65985213 -51877414 - MER41B-int LTR ERV1 -4171 3524 1390 * 3786 164 16 14 chr9 65985189 65985824 -51876803 - MER41B-int LTR ERV1 -5310 636 1 4169 118 82 0 chr9 65985824 65986411 -51876216 - MER41B LTR ERV1 0 635 1 210 217 24 107 chr9 65986607 65986761 -51875866 + MER5B DNA MER1_type 8 189 0 6394 54 5 6 chr9 65987022 65987823 -51874804 - L1PA8 LINE L1 -2 6170 5371 290 278 31 10 chr9 65988263 65988360 -51874267 - MLT1K LTR MaLR -308 280 182 265 128 39 115 chr9 65988752 65988830 -51873797 + LTR45 LTR ERV1 75 146 -379 180 216 27 0 chr9 65988835 65988872 -51873755 + MER5A DNA MER1_type 25 62 -127 706 188 30 18 chr9 65988874 65989039 -51873588 + LTR45 LTR ERV1 359 525 0 341 255 29 3 chr9 65989151 65989271 -51873356 + MLT1H LTR MaLR 18 179 -370 6613 150 37 19 chr9 65989334 65990304 -51872323 + Ricksha DNA DNA 1707 2716 -530 2395 84 3 0 chr9 65990304 65990602 -51872025 + AluSp SINE Alu 7 305 -8 6613 150 37 19 chr9 65990602 65991143 -51871484 + Ricksha DNA DNA 2716 3246 0 496 316 117 15 chr9 65991168 65991611 -51871016 - L1ME LINE L1 -476 5688 5194 438 249 78 55 chr9 65992051 65992360 -51870267 - L1ME LINE L1 -1447 4699 4384 298 282 159 51 chr9 65992989 65993479 -51869148 - HAL1 LINE L1 -742 1765 1223 28 0 0 0 chr9 65994125 65994153 -51868474 + AT_rich Low_complexity Low_complexity 1 28 0 512 238 76 65 chr9 65994358 65994661 -51867966 + L1ME LINE L1 5270 5577 -544 1136 217 36 1 chr9 65997265 65997559 -51865068 + MER2 DNA MER2_type 4 345 0 595 89 0 0 chr9 65998419 65998498 -51864129 - Alu SINE Alu -9 303 225 412 234 9 18 chr9 65998925 65999036 -51863591 + L1ME3 LINE L1 6051 6160 -2 24 0 0 0 chr9 66001605 66001629 -51860998 + AT_rich Low_complexity Low_complexity 1 24 0 300 111 0 0 chr9 66003352 66003397 -51859230 + (TG)n Simple_repeat Simple_repeat 1 45 0 1880 147 0 30 chr9 66003399 66003698 -51858929 - AluJb SINE Alu -22 290 1 1738 170 35 3 chr9 66003699 66004010 -51858617 - MER7A DNA MER2_type -23 323 5 230 184 156 28 chr9 66005165 66005274 -51857353 - LTR16C LTR ERVL 0 491 369 266 274 104 22 chr9 66005800 66005935 -51856692 + MIR SINE MIR 104 249 -13 350 258 138 48 chr9 66006263 66006405 -51856222 - L2 LINE L2 0 3313 3152 381 169 42 0 chr9 66006405 66006476 -51856151 - MER116 DNA Mariner -2 78 5 350 258 138 48 chr9 66006476 66006500 -51856127 - L2 LINE L2 -161 3152 3132 361 350 70 0 chr9 66006513 66006656 -51855971 - MIR SINE MIR -79 183 31 898 205 5 32 chr9 66007474 66007664 -51854963 - MER5A DNA MER1_type -1 188 4 722 298 33 0 chr9 66008053 66008268 -51854359 + MIR SINE MIR 32 253 -9 904 227 68 34 chr9 66009075 66009099 -51853528 - HsTC2 DNA Tc2 0 1898 1876 1022 162 146 11 chr9 66009099 66009284 -51853343 - MER6B DNA MER2_type 0 210 1 904 227 68 34 chr9 66009284 66009611 -51853016 - HsTC2 DNA Tc2 -22 1876 1535 4896 216 99 14 chr9 66009611 66011059 -51851568 + L1ME1 LINE L1 3151 4722 -1424 944 186 53 11 chr9 66011087 66011275 -51851352 + L1ME1 LINE L1 5790 5985 -181 293 186 57 14 chr9 66011404 66011474 -51851153 - HsTC2 DNA Tc2 -544 1354 1282 * 347 139 0 23 chr9 66011472 66011568 -51851059 - HsTC2 DNA Tc2 -1754 144 16 2017 259 81 16 chr9 66011940 66012635 -51849992 + HsTC2a DNA Tc2 5 744 0 1130 146 6 0 chr9 66012757 66012922 -51849705 - AluSq SINE Alu -14 299 134 2215 88 10 10 chr9 66012922 66013217 -51849410 - AluY SINE Alu -16 295 1 2340 212 29 26 chr9 66013221 66013768 -51848859 - L1MC4 LINE L1 -142 7900 7352 22 0 0 0 chr9 66013880 66013902 -51848725 + AT_rich Low_complexity Low_complexity 1 22 0 262 128 0 0 chr9 66014064 66014103 -51848524 + L2 LINE L2 3266 3304 -9 252 0 0 0 chr9 66014610 66014638 -51847989 + (T)n Simple_repeat Simple_repeat 1 28 0 648 181 71 8 chr9 66014920 66015047 -51847580 - MER20 DNA MER1_type -61 158 24 4015 137 58 6 chr9 66016112 66016784 -51845843 - L1MB3 LINE L1 -2 6181 5475 241 221 0 0 chr9 66016889 66016942 -51845685 - L1MB3 LINE L1 -695 5473 5428 496 276 128 0 chr9 66017121 66017298 -51845329 + MIR SINE MIR 58 258 -4 232 184 0 0 chr9 66017501 66017539 -51845088 + L1MC5 LINE L1 6734 6771 -1190 349 253 94 34 chr9 66017662 66017692 -51844935 - L1ME3 LINE L1 -10 6160 6133 2415 107 0 0 chr9 66017692 66018001 -51844626 - AluSx SINE Alu -3 309 1 349 253 94 34 chr9 66018001 66018149 -51844478 - L1ME3 LINE L1 -37 6133 5970 232 263 53 53 chr9 66018170 66018322 -51844305 - L1P LINE L1 -746 5408 5257 504 199 75 133 chr9 66018410 66018636 -51843991 - L1ME1 LINE L1 -115 6051 5839 984 183 166 46 chr9 66018641 66018925 -51843702 + L1ME1 LINE L1 5531 5848 -318 21 0 0 0 chr9 66018928 66018949 -51843678 + AT_rich Low_complexity Low_complexity 1 21 0 321 26 0 0 chr9 66019045 66019083 -51843544 + (CA)n Simple_repeat Simple_repeat 2 39 0 21 0 0 0 chr9 66019428 66019449 -51843178 + AT_rich Low_complexity Low_complexity 1 21 0 183 314 100 0 chr9 66019910 66019980 -51842647 + L2 LINE L2 3010 3086 -186 5756 129 50 6 chr9 66021082 66021945 -51840682 - MER4D LTR ERV1 -2 901 1 251 197 33 0 chr9 66022624 66022685 -51839942 + (TA)n Simple_repeat Simple_repeat 2 64 0 3161 176 132 48 chr9 66022753 66023456 -51839171 + MER21B LTR ERV1 1 762 -101 394 282 31 51 chr9 66028230 66028425 -51834202 - L1P2 LINE L1 -704 5450 5260 2345 88 0 0 chr9 66028547 66028844 -51833783 + AluY SINE Alu 1 297 -14 255 61 0 0 chr9 66028845 66028878 -51833749 + (TA)n Simple_repeat Simple_repeat 1 33 0 240 261 42 59 chr9 66028882 66029001 -51833626 - L1 LINE L1 -1092 5054 4938 314 345 127 5 chr9 66032043 66032112 -51830515 - MIR SINE MIR -35 227 168 1732 226 20 55 chr9 66032112 66032407 -51830220 + MER63B DNA MER1_type 1 276 -786 2360 100 0 0 chr9 66032407 66032716 -51829911 - AluSg SINE Alu -1 309 1 1732 226 20 55 chr9 66032716 66032872 -51829755 + MER63B DNA MER1_type 276 436 0 314 345 127 5 chr9 66032872 66032999 -51829628 - MIR SINE MIR -94 168 7 228 227 34 68 chr9 66033524 66033612 -51829015 + MER5B DNA MER1_type 91 175 -3 225 0 0 0 chr9 66034817 66034842 -51827785 + (T)n Simple_repeat Simple_repeat 1 25 0 433 286 22 28 chr9 66037222 66037261 -51825366 + MIR SINE MIR 9 47 -215 4629 112 73 5 chr9 66037261 66037931 -51824696 - LTR62 LTR ERVK -2 717 2 433 286 22 28 chr9 66037931 66038069 -51824558 + MIR SINE MIR 47 185 -77 221 216 39 0 chr9 66040080 66040131 -51822496 + CT-rich Low_complexity Low_complexity 4 56 0 2051 122 4 4 chr9 66040228 66040507 -51822120 - AluJb SINE Alu -33 279 1 22 0 0 0 chr9 66040853 66040875 -51821752 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 66042144 66042165 -51820462 + AT_rich Low_complexity Low_complexity 1 21 0 859 179 67 17 chr9 66043258 66043437 -51819190 + MER5A DNA MER1_type 2 189 0 594 206 32 19 chr9 66043456 66043611 -51819016 + MER5B DNA MER1_type 1 157 -21 318 244 33 11 chr9 66043677 66043767 -51818860 + MER5A DNA MER1_type 32 123 -66 360 234 243 9 chr9 66044896 66045007 -51817620 + MER5B DNA MER1_type 36 172 -6 1674 163 49 65 chr9 66045279 66045647 -51816980 + MLT1A1 LTR MaLR 4 365 0 1341 237 119 40 chr9 66045698 66046106 -51816521 - MLT1H1 LTR MaLR -9 546 91 2345 90 0 0 chr9 66046106 66046394 -51816233 + AluSc SINE Alu 1 288 -21 1341 237 119 40 chr9 66046394 66046482 -51816145 - MLT1H1 LTR MaLR -464 91 11 593 150 10 40 chr9 66047552 66047652 -51814975 - Tigger7 DNA MER2_type -1 2586 2490 * 1369 197 0 23 chr9 66047651 66047910 -51814717 - Tigger7 DNA MER2_type -284 266 14 1069 108 19 0 chr9 66048469 66048626 -51814001 - MER4B LTR ERV1 -450 160 1 348 83 0 0 chr9 66048869 66048917 -51813710 + (TG)n Simple_repeat Simple_repeat 1 48 0 276 258 52 0 chr9 66049445 66049542 -51813085 - MIR SINE MIR -34 228 127 1146 142 0 0 chr9 66049673 66049842 -51812785 + FRAM SINE Alu 4 172 -4 418 180 80 10 chr9 66050082 66050182 -51812445 + MER5A DNA MER1_type 29 135 -54 186 238 48 0 chr9 66050185 66050227 -51812400 + MER5A DNA MER1_type 111 154 -35 3344 96 51 92 chr9 66051098 66051726 -51810901 - LTR43 LTR ERV1 0 602 1 407 302 33 93 chr9 66052784 66052864 -51809763 + Charlie7 DNA MER1_type 407 490 -2122 1989 107 96 0 chr9 66052864 66053144 -51809483 + AluSq SINE Alu 5 311 -2 407 302 33 93 chr9 66053144 66053397 -51809230 + Charlie7 DNA MER1_type 490 720 -1892 259 215 76 76 chr9 66053392 66053564 -51809063 + Charlie7 DNA MER1_type 2418 2589 -23 * 324 200 75 0 chr9 66053894 66053974 -51808653 + MLT1I LTR MaLR 318 403 -6 286 303 0 0 chr9 66057406 66057482 -51805145 + MIR SINE MIR 85 160 -102 2152 143 0 6 chr9 66058363 66058677 -51803950 + AluSx SINE Alu 1 312 0 2361 133 30 15 chr9 66058931 66059328 -51803299 - MER57A LTR ERV1 0 403 1 2361 71 0 0 chr9 66059653 66059970 -51802657 - AluY SINE Alu 0 317 1 4164 181 55 13 chr9 66060272 66060692 -51801935 - L1MB7 LINE L1 -17 6167 5766 2239 116 7 0 chr9 66060692 66060986 -51801641 - AluSg SINE Alu -14 296 1 4164 181 55 13 chr9 66060986 66061536 -51801091 - L1MB7 LINE L1 -418 5766 5158 2174 102 20 0 chr9 66063173 66063468 -51799159 + AluSq SINE Alu 1 301 -12 2355 100 0 7 chr9 66064794 66065103 -51797524 + AluSx SINE Alu 1 307 -5 227 161 48 81 chr9 66065528 66065590 -51797037 + MER63 DNA MER1_type 1 686 -376 281 341 103 0 chr9 66067004 66067130 -51795497 - L2 LINE L2 0 3272 3134 221 246 29 14 chr9 66067177 66067246 -51795381 + CT-rich Low_complexity Low_complexity 1 70 0 351 294 29 0 chr9 66067256 66067358 -51795269 - L2 LINE L2 -6 3307 3203 228 267 0 0 chr9 66067710 66067770 -51794857 - MIR SINE MIR -106 156 97 216 285 21 104 chr9 66067958 66068102 -51794525 - MIR3 SINE MIR -7 201 70 23 0 0 0 chr9 66069342 66069365 -51793262 + AT_rich Low_complexity Low_complexity 1 23 0 1024 171 0 6 chr9 66070799 66070969 -51791658 + AluJb SINE Alu 131 299 -13 262 279 42 32 chr9 66071599 66071815 -51790812 - L1MB7 LINE L1 -976 5170 4953 351 0 0 0 chr9 66071815 66071854 -51790773 + (CA)n Simple_repeat Simple_repeat 2 40 0 22 0 0 0 chr9 66071856 66071878 -51790749 + AT_rich Low_complexity Low_complexity 1 22 0 986 128 0 0 chr9 66071898 66072031 -51790596 - AluSq/x SINE Alu -180 133 1 554 247 44 51 chr9 66072157 66072432 -51790195 - L1MB7 LINE L1 -1312 4834 4562 2203 89 66 65 chr9 66072446 66072863 -51789764 - LTR14B LTR ERVK 0 608 1 210 71 0 0 chr9 66073354 66073382 -51789245 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 315 206 47 75 chr9 66073382 66073489 -51789138 - L2 LINE L2 -13 3300 3197 425 276 78 53 chr9 66073505 66073827 -51788800 - L1MB7 LINE L1 -2192 3954 3625 581 267 94 53 chr9 66073848 66074114 -51788513 + L2 LINE L2 3032 3308 -5 244 236 69 14 chr9 66075506 66075578 -51787049 - MLT1I LTR MaLR 0 409 334 2331 178 40 26 chr9 66075984 66076478 -51786149 + L1MB7 LINE L1 5673 6173 -11 432 206 59 80 chr9 66076494 66076520 -51786107 + L1MC5 LINE L1 7339 7364 -597 1571 165 103 0 chr9 66076520 66076793 -51785834 + AluJo SINE Alu 1 301 -11 432 206 59 80 chr9 66076793 66077052 -51785575 + L1MC5 LINE L1 7364 7618 -343 * 516 191 17 0 chr9 66077047 66077162 -51785465 - L1MB7 LINE L1 -3669 2477 2361 502 202 8 8 chr9 66077164 66077283 -51785344 - L1MDa LINE L1 -2663 3877 3759 1520 231 121 19 chr9 66077293 66077821 -51784806 - L1MDa LINE L1 -3473 3067 2487 466 260 47 12 chr9 66078112 66078281 -51784346 - HAL1 LINE L1 -747 1760 1586 585 299 87 17 chr9 66078289 66078633 -51783994 - HAL1 LINE L1 -1017 1490 1123 186 128 0 0 chr9 66078698 66078737 -51783890 + (TA)n Simple_repeat Simple_repeat 2 40 0 302 190 32 7 chr9 66078806 66079248 -51783379 + (TA)n Simple_repeat Simple_repeat 1 453 0 2248 68 17 24 chr9 66080083 66080378 -51782249 + AluY SINE Alu 1 293 -18 3779 121 81 44 chr9 66081014 66081423 -51781204 - MER4D LTR ERV1 0 866 459 2308 97 3 34 chr9 66081423 66081744 -51780883 - AluSq SINE Alu -2 311 1 3779 121 81 44 chr9 66081744 66082051 -51780576 - MER4D LTR ERV1 -407 459 165 231 315 8 23 chr9 66083668 66083798 -51778829 + CT-rich Low_complexity Low_complexity 4 131 0 1379 256 22 7 chr9 66084152 66084597 -51778030 - L1M4 LINE L1 -1553 4593 4142 2328 199 42 134 chr9 66084811 66084930 -51777697 - L1M4 LINE L1 -2012 4134 4006 2144 140 0 10 chr9 66084930 66085237 -51777390 - AluSx SINE Alu -8 304 1 2328 199 42 134 chr9 66085237 66085368 -51777259 - L1M4 LINE L1 -2140 4006 3865 6967 55 7 1 chr9 66085368 66087009 -51775618 - L1PA7 LINE L1 -5 6149 4495 2328 199 42 134 chr9 66087009 66087623 -51775004 - L1M4 LINE L1 -2281 3865 3349 412 208 26 0 chr9 66087623 66087700 -51774927 - Tigger5 DNA MER2_type 0 2323 2245 247 276 35 9 chr9 66087748 66087864 -51774763 - L1M4 LINE L1 -2796 3350 3232 * 1046 171 30 27 chr9 66087860 66088123 -51774504 - L1M4 LINE L1 -2865 3281 3018 479 270 86 6 chr9 66088498 66088661 -51773966 - MER5B DNA MER1_type -2 176 1 21 71 0 0 chr9 66092831 66092873 -51769754 + AT_rich Low_complexity Low_complexity 1 42 0 870 226 133 7 chr9 66095054 66095324 -51767303 - LTR16C LTR ERVL -2 489 186 720 206 6 67 chr9 66095431 66095611 -51767016 - MER5A DNA MER1_type -19 170 2 227 79 26 0 chr9 66098076 66098114 -51764513 + (TA)n Simple_repeat Simple_repeat 1 39 0 21 36 0 0 chr9 66098121 66098149 -51764478 + AT_rich Low_complexity Low_complexity 1 28 0 2322 227 29 52 chr9 66199227 66199348 -51663279 + L1M4 LINE L1 2522 2644 -3502 2145 117 3 7 chr9 66199348 66199647 -51662980 - AluSx SINE Alu -14 298 1 2322 227 29 52 chr9 66199647 66199987 -51662640 + L1M4 LINE L1 2644 2990 -3156 2033 128 7 0 chr9 66199987 66200276 -51662351 + AluSx SINE Alu 2 292 -20 242 0 61 0 chr9 66200279 66200312 -51662315 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2322 227 29 52 chr9 66200312 66200736 -51661891 + L1M4 LINE L1 2992 3392 -2754 609 197 67 158 chr9 66200786 66201070 -51661557 + MLT1A1 LTR MaLR 1 258 -107 685 195 30 18 chr9 66201178 66201342 -51661285 - MER20 DNA MER1_type -43 176 11 437 185 134 0 chr9 66201465 66201584 -51661043 + MLT1C LTR MaLR 129 263 -204 1460 239 118 33 chr9 66201716 66202180 -51660447 - L1M4 LINE L1 -2781 3365 2815 1774 176 0 29 chr9 66202180 66202487 -51660140 + AluJo SINE Alu 1 298 -14 1460 239 118 33 chr9 66202487 66202750 -51659877 - L1M4 LINE L1 -3331 2815 2576 6714 114 1 34 chr9 66202892 66203951 -51658676 - L1P LINE L1 -4500 1646 623 728 68 0 0 chr9 66203949 66204037 -51658590 - L1P LINE L1 -6048 98 11 * 308 313 57 55 chr9 66204087 66204839 -51657788 + L1M4 LINE L1 4078 4831 -1315 8234 189 95 84 chr9 66205043 66206028 -51656599 + L1MCa LINE L1 33 1006 -5420 3471 95 30 8 chr9 66206028 66206531 -51656096 - MER75 DNA T2_type 0 514 1 8234 189 95 84 chr9 66206531 66207496 -51655131 + L1MCa LINE L1 1006 2017 -4409 2124 74 4 4 chr9 66207496 66207767 -51654860 - AluY SINE Alu -7 304 34 8234 189 95 84 chr9 66207767 66208261 -51654366 + L1MCa LINE L1 2017 2504 -3922 2042 135 71 0 chr9 66208263 66208574 -51654053 + MER1B DNA MER1_type 7 339 0 686 248 24 9 chr9 66208576 66208786 -51653841 + L1MCa LINE L1 2510 2722 -3704 19369 56 2 2 chr9 66208892 66211384 -51651243 + L1P LINE L1 1760 4252 -1894 5782 242 88 26 chr9 66211390 66213922 -51648705 + L1MEc LINE L1 1827 4446 -1769 4264 242 32 26 chr9 66214096 66215465 -51647162 + L1M4 LINE L1 3456 4832 -1314 1287 149 9 0 chr9 66215467 66215682 -51646945 + L1MD1 LINE L1 6006 6222 -20 824 184 34 0 chr9 66215707 66215886 -51646741 + L1M4 LINE L1 3890 4074 -2072 330 169 70 99 chr9 66216637 66216779 -51645848 + LTR37B LTR ERV1 331 468 0 2692 206 37 21 chr9 66217333 66217895 -51644732 + L1MA2 LINE L1 15 585 -6980 * 7107 161 21 21 chr9 66217890 66218533 -51644094 + L1MA2 LINE L1 5295 5936 -1629 279 0 0 0 chr9 66218533 66218564 -51644063 + (CA)n Simple_repeat Simple_repeat 2 32 0 7107 161 21 21 chr9 66218564 66218759 -51643868 + L1MA2 LINE L1 5936 6129 -1436 180 0 0 0 chr9 66218759 66218779 -51643848 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 7107 161 21 21 chr9 66218779 66219300 -51643327 + L1MA2 LINE L1 6129 6656 -909 4195 105 28 3 chr9 66219304 66219952 -51642675 + L1MA2 LINE L1 7059 7722 -1 5183 240 34 21 chr9 66220693 66222191 -51640436 + L1MC4a LINE L1 3520 5036 -1110 379 230 161 37 chr9 66222235 66222452 -51640175 + L1MC4a LINE L1 5688 5931 -1877 2121 162 11 6 chr9 66222473 66222837 -51639790 + MER47A DNA MER2_type 1 366 0 513 0 0 0 chr9 66224456 66224513 -51638114 + (TG)n Simple_repeat Simple_repeat 2 58 0 1344 229 84 34 chr9 66224516 66224958 -51637669 - L1ME2 LINE L1 -10 6154 5691 854 232 12 55 chr9 66225168 66225422 -51637205 - L1ME2 LINE L1 -474 5690 5448 727 290 98 7 chr9 66225922 66226229 -51636398 - L1ME3A LINE L1 -9 6161 5827 616 260 89 12 chr9 66226230 66226557 -51636070 - L1ME3A LINE L1 -1458 4688 4337 4601 135 63 35 chr9 66226557 66227752 -51634875 + L1PA16 LINE L1 4741 5967 -199 2006 108 35 11 chr9 66227752 66228039 -51634588 + AluSx SINE Alu 1 294 -18 4601 135 63 35 chr9 66228039 66228245 -51634382 + L1PA16 LINE L1 5967 6166 0 1593 205 15 69 chr9 66228778 66229183 -51633444 - MLT1B LTR MaLR -7 383 1 290 275 29 0 chr9 66229698 66229767 -51632860 - MIR3 SINE MIR -21 187 117 1565 185 108 24 chr9 66229882 66230261 -51632366 + L1MB7 LINE L1 5636 6046 -138 1247 136 83 4 chr9 66231095 66231337 -51631290 - L1MA9 LINE L1 -192 6120 5860 738 208 6 0 chr9 66231363 66231522 -51631105 + L1MA9 LINE L1 6153 6312 0 236 176 15 29 chr9 66231960 66232028 -51630599 - L1ME4a LINE L1 -3 6118 6052 216 200 20 0 chr9 66232686 66232736 -51629891 + A-rich Low_complexity Low_complexity 6 56 0 1829 145 11 3 chr9 66232822 66233105 -51629522 + AluSg SINE Alu 25 309 -1 1595 201 52 81 chr9 66233386 66233919 -51628708 - MLT2B1 LTR ERVL 0 520 3 535 266 54 0 chr9 66233932 66234116 -51628511 + L1PBa LINE L1 6 199 -6664 1997 147 3 0 chr9 66234902 66235202 -51627425 - AluSx SINE Alu -11 301 1 575 191 16 13 chr9 66236337 66236653 -51625974 + GA-rich Low_complexity Low_complexity 1 317 0 579 178 3 12 chr9 66236769 66237105 -51625522 + GA-rich Low_complexity Low_complexity 1 333 0 2507 77 0 13 chr9 66238587 66238900 -51623727 + AluSg SINE Alu 1 309 -1 2330 243 72 41 chr9 66238951 66239677 -51622950 - L1ME1 LINE L1 -140 6026 5266 307 209 0 60 chr9 66241983 66242076 -51620551 - MIR SINE MIR -61 147 101 220 319 33 0 chr9 66244228 66244319 -51618308 + MIR SINE MIR 118 211 -51 49 18 0 0 chr9 66244658 66244714 -51617913 + AT_rich Low_complexity Low_complexity 1 56 0 14433 178 60 40 chr9 66244714 66246512 -51616115 - L1PB2 LINE L1 -1 6866 5106 216 0 0 0 chr9 66246512 66246536 -51616091 + (TTTTA)n Simple_repeat Simple_repeat 4 27 0 14433 178 60 40 chr9 66246536 66247426 -51615201 - L1PB2 LINE L1 -1761 5106 4235 1116 131 0 19 chr9 66247426 66247586 -51615041 - AluSg/x SINE Alu -27 285 129 14433 178 60 40 chr9 66247586 66250595 -51612032 - L1PB2 LINE L1 -2632 4235 920 631 179 211 0 chr9 66252183 66252339 -51610288 + MER5A DNA MER1_type 1 189 0 2086 143 64 47 chr9 66252764 66252804 -51609823 - MLT2D LTR ERVL -1 413 375 366 23 0 0 chr9 66252804 66252847 -51609780 + (TG)n Simple_repeat Simple_repeat 2 44 0 2086 143 64 47 chr9 66252847 66253212 -51609415 - MLT2D LTR ERVL -39 375 1 186 167 0 0 chr9 66253361 66253397 -51609230 + (CA)n Simple_repeat Simple_repeat 1 36 0 1405 160 61 11 chr9 66255695 66255958 -51606669 + AluJo SINE Alu 7 282 -30 267 300 0 0 chr9 66256100 66256270 -51606357 + (CA)n Simple_repeat Simple_repeat 1 170 0 399 294 0 0 chr9 66256284 66256464 -51606163 + (CA)n Simple_repeat Simple_repeat 1 180 0 574 261 43 10 chr9 66256906 66257101 -51605526 + L1ME LINE L1 5593 5785 -377 22 106 0 0 chr9 66257430 66257515 -51605112 + AT_rich Low_complexity Low_complexity 1 85 0 182 275 0 29 chr9 66258932 66259001 -51603626 - L2 LINE L2 -290 2982 2916 411 239 41 46 chr9 66259125 66259322 -51603305 - Charlie7 DNA MER1_type 0 2612 2417 3595 118 7 45 chr9 66259461 66260294 -51602333 + L1PB1 LINE L1 4984 5789 -362 2244 92 50 5 chr9 66260295 66260750 -51601877 + LTR17 LTR ERV1 256 780 0 11023 76 48 9 chr9 66260750 66262218 -51600409 + HERV17 LTR ERV1 1 1525 -7101 10625 56 2 1 chr9 66262203 66263476 -51599151 + HERV17 LTR ERV1 2481 3754 -4872 * 5070 53 2 2 chr9 66263455 66264074 -51598553 + HERV17 LTR ERV1 5405 6023 -2603 * 2396 72 0 0 chr9 66264093 66264384 -51598243 + HERV17 LTR ERV1 8336 8626 0 2603 68 3 0 chr9 66264384 66264709 -51597918 + LTR17 LTR ERV1 1 326 -454 186 43 0 0 chr9 66264710 66264733 -51597894 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 2273 138 8 5 chr9 66264734 66265104 -51597523 + L1PB1 LINE L1 5777 6147 -4 30 0 0 0 chr9 66265106 66265136 -51597491 + AT_rich Low_complexity Low_complexity 1 30 0 586 275 89 58 chr9 66265499 66265723 -51596904 - L1ME4a LINE L1 -48 6073 5857 2076 149 39 10 chr9 66265723 66266106 -51596521 - L1MB3 LINE L1 0 6183 5790 586 275 89 58 chr9 66266106 66266328 -51596299 - L1ME4a LINE L1 -264 5857 5613 3103 209 39 146 chr9 66266687 66266812 -51595815 - L1MC4a LINE L1 -5 7803 7666 2148 142 0 0 chr9 66266812 66267121 -51595506 + AluSx SINE Alu 1 309 -3 3103 209 39 146 chr9 66267121 66267150 -51595477 - L1MC4a LINE L1 -142 7666 7635 1598 181 4 4 chr9 66267150 66267466 -51595161 + AluJb SINE Alu 1 316 0 3103 209 39 146 chr9 66267466 66267897 -51594730 - L1MC4a LINE L1 -173 7635 7159 549 194 65 0 chr9 66267897 66268021 -51594606 - MLT1F1 LTR MaLR -433 134 3 3103 209 39 146 chr9 66268021 66268704 -51593923 - L1MC4a LINE L1 -649 7159 6591 405 0 0 0 chr9 66268747 66268792 -51593835 + (TA)n Simple_repeat Simple_repeat 1 45 0 21 0 0 0 chr9 66270077 66270098 -51592529 + AT_rich Low_complexity Low_complexity 1 21 0 212 336 18 0 chr9 66270156 66270269 -51592358 + MIR SINE MIR 35 149 -113 554 188 0 0 chr9 66270278 66270379 -51592248 - MLT1C LTR MaLR -1 504 404 1894 185 70 34 chr9 66270403 66270846 -51591781 + LTR2B LTR ERV1 32 490 0 1073 189 98 31 chr9 66270846 66271153 -51591474 - MLT1C LTR MaLR -134 333 6 283 194 31 82 chr9 66271158 66271256 -51591371 + MIR SINE MIR 156 248 -14 684 175 92 0 chr9 66271267 66271447 -51591180 + FLAM_C SINE Alu 2 192 0 22 0 0 0 chr9 66271480 66271502 -51591125 + AT_rich Low_complexity Low_complexity 1 22 0 2254 160 16 5 chr9 66271619 66272006 -51590621 + MER61C LTR ERV1 14 404 -30 2352 285 67 27 chr9 66272985 66273795 -51588832 + L1MB8 LINE L1 11 852 -6007 1716 247 75 47 chr9 66273798 66274503 -51588124 + L1MB8 LINE L1 1775 2499 -4460 297 285 109 39 chr9 66274608 66274994 -51587633 + L1MB8 LINE L1 2570 2982 -4156 6540 207 33 30 chr9 66274995 66276713 -51585914 + L1MB8 LINE L1 4452 6173 -784 1765 176 14 57 chr9 66276715 66277152 -51585475 + L1MB8 LINE L1 6553 6970 -19 891 283 150 23 chr9 66277175 66277648 -51584979 - MLT1E LTR MaLR -54 539 7 25 0 0 0 chr9 66278327 66278352 -51584275 + AT_rich Low_complexity Low_complexity 1 25 0 2133 143 9 26 chr9 66279833 66280176 -51582451 + MER1B DNA MER1_type 1 337 0 238 281 6 60 chr9 66281749 66281916 -51580711 + A-rich Low_complexity Low_complexity 3 160 0 349 125 0 0 chr9 66282664 66282712 -51579915 + MLT1C LTR MaLR 5 52 -415 432 271 19 0 chr9 66282932 66283039 -51579588 + MER5A DNA MER1_type 4 112 -77 333 0 0 0 chr9 66283417 66283454 -51579173 + (TG)n Simple_repeat Simple_repeat 2 38 0 182 278 19 0 chr9 66284578 66284632 -51577995 + MIR SINE MIR 106 160 -102 2527 132 8 24 chr9 66284663 66285033 -51577594 + THE1B LTR MaLR 1 364 0 9778 100 1 1 chr9 66285033 66286325 -51576302 + THE1B-int LTR MaLR 1 1293 -287 422 273 59 31 chr9 66286392 66286629 -51575998 - MLT1H1 LTR MaLR -280 315 11 1666 67 0 0 chr9 66287474 66287668 -51574959 - MER107 DNA MER1_type 0 197 4 1892 138 130 16 chr9 66288178 66288548 -51574079 - MER101 LTR ERV1 -62 412 1 2725 136 11 20 chr9 66289954 66290394 -51572233 - L1MC1 LINE L1 0 6333 5898 1058 276 3 0 chr9 66290398 66290699 -51571928 - L1M4 LINE L1 -1201 5339 5038 2435 199 74 27 chr9 66290849 66291676 -51570951 - L1MDa LINE L1 -3682 2858 2011 * 2480 87 35 27 chr9 66291670 66291879 -51570748 - L1PB1 LINE L1 0 6151 5943 15229 175 38 10 chr9 66291879 66297169 -51565458 - L1PBa LINE L1 -360 6507 1113 1119 164 0 19 chr9 66297149 66297356 -51565271 - L1PBa LINE L1 -6653 210 8 * 380 170 4 67 chr9 66297356 66297446 -51565181 - MLT1A1 LTR MaLR -67 323 213 2058 179 74 15 chr9 66297451 66297490 -51565137 - L1MDa LINE L1 -4493 2047 2012 1782 73 39 0 chr9 66297490 66297724 -51564903 - MER75B DNA T2_type 0 243 1 2058 179 74 15 chr9 66297724 66298142 -51564485 - L1MDa LINE L1 -4528 2012 1563 1610 281 64 41 chr9 66298176 66298784 -51563843 - L1MDa LINE L1 -5593 947 19 405 224 112 0 chr9 66298781 66298897 -51563730 - L1 LINE L1 -2279 3867 3735 * 546 300 30 30 chr9 66298882 66299112 -51563515 - L1MEc LINE L1 -5749 647 418 1070 254 14 55 chr9 66299119 66299552 -51563075 + L1ME1 LINE L1 5747 6161 -5 488 208 34 67 chr9 66299575 66299753 -51562874 + LTR37B LTR ERV1 213 384 -84 204 67 0 0 chr9 66299776 66299806 -51562821 + (TAA)n Simple_repeat Simple_repeat 2 31 0 1446 187 54 31 chr9 66301111 66301405 -51561222 - AluJb SINE Alu -5 307 7 475 280 62 35 chr9 66301727 66301984 -51560643 + HAL1b LINE L1 373 636 -712 1695 207 18 37 chr9 66302150 66302531 -51560096 - MLT1A2 LTR MaLR 0 374 1 258 111 16 32 chr9 66302606 66302669 -51559958 + (CA)n Simple_repeat Simple_repeat 1 62 0 433 88 0 11 chr9 66303379 66303607 -51559020 + AluY SINE Alu 1 280 -32 432 0 0 0 chr9 66303608 66303656 -51558971 + (TAAAA)n Simple_repeat Simple_repeat 2 49 0 2216 193 71 4 chr9 66303667 66304541 -51558086 + L1MB5 LINE L1 4853 5774 -400 285 29 0 0 chr9 66304664 66304698 -51557929 + (TCCA)n Simple_repeat Simple_repeat 4 37 0 726 110 37 0 chr9 66304740 66304849 -51557778 - L1PA13 LINE L1 0 6163 6051 1616 181 23 13 chr9 66304852 66305161 -51557466 + L1MB5 LINE L1 5863 6174 0 1951 136 29 0 chr9 66305174 66305453 -51557174 + AluSx SINE Alu 2 288 -24 6371 151 25 20 chr9 66305620 66306691 -51555936 + Tigger1 DNA MER2_type 1 1077 -1341 5192 184 30 7 chr9 66306774 66307695 -51554932 - MLT1A2-int LTR MaLR -315 1336 394 2498 232 12 59 chr9 66307980 66308643 -51553984 - MER82 DNA MER2_type 0 653 22 2874 215 81 38 chr9 66308643 66309383 -51553244 + L1ME1 LINE L1 4566 5273 -893 198 0 0 0 chr9 66309383 66309405 -51553222 + (TA)n Simple_repeat Simple_repeat 1 22 0 2874 215 81 38 chr9 66309405 66309621 -51553006 + L1ME1 LINE L1 5273 5478 -688 203 0 0 36 chr9 66309621 66309649 -51552978 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 2874 215 81 38 chr9 66309649 66310199 -51552428 + L1ME1 LINE L1 5478 6122 -44 510 169 22 148 chr9 66310077 66310260 -51552367 + L1MA10 LINE L1 6168 6327 -7 * 202 234 0 0 chr9 66310362 66310409 -51552218 + A-rich Low_complexity Low_complexity 1 47 0 285 277 208 23 chr9 66310974 66311104 -51551523 - MIR SINE MIR -97 165 12 320 235 101 82 chr9 66311923 66312000 -51550627 + L1M4 LINE L1 5088 5162 -984 2215 106 0 0 chr9 66312000 66312305 -51550322 + AluSx SINE Alu 1 305 0 320 235 101 82 chr9 66312305 66312532 -51550095 + L1M4 LINE L1 5162 5399 -747 441 161 0 0 chr9 66314014 66314101 -51548526 + GA-rich Low_complexity Low_complexity 1 87 0 253 345 42 8 chr9 66314733 66314852 -51547775 + L2 LINE L2 3150 3272 0 265 150 50 0 chr9 66315278 66315378 -51547249 + (TA)n Simple_repeat Simple_repeat 1 105 0 2305 187 61 55 chr9 66315382 66316072 -51546555 - L1MDa LINE L1 -4209 2331 1638 365 248 113 21 chr9 66317068 66317209 -51545418 - HAL1 LINE L1 -110 2397 2244 972 309 79 14 chr9 66317537 66317815 -51544812 - HAL1 LINE L1 -772 1735 1477 2354 62 17 3 chr9 66317815 66318107 -51544520 - AluY SINE Alu -15 296 1 972 309 79 14 chr9 66318107 66318382 -51544245 - HAL1 LINE L1 -1030 1477 1146 245 151 0 94 chr9 66318402 66318455 -51544172 + MLT1A2 LTR MaLR 2 49 -325 507 248 35 9 chr9 66318455 66318568 -51544059 + MSTD LTR MaLR 1 116 -280 195 333 14 29 chr9 66318696 66318765 -51543862 - L2 LINE L2 -2 3270 3203 438 273 198 0 chr9 66319045 66319217 -51543410 + MER115 DNA AcHobo 41 246 -447 2868 137 14 0 chr9 66319636 66320058 -51542569 + MSTA LTR MaLR 1 428 0 268 314 116 8 chr9 66320164 66320285 -51542342 + MIR3 SINE MIR 22 155 -53 212 284 99 0 chr9 66321079 66321160 -51541467 - MIR SINE MIR -10 252 164 * 261 237 114 30 chr9 66321150 66321299 -51541328 + MIR SINE MIR 87 251 -11 195 327 0 0 chr9 66321403 66321458 -51541169 - L2 LINE L2 -12 3301 3247 281 372 77 32 chr9 66321603 66321759 -51540868 - L2 LINE L2 -9 3263 3101 197 261 0 0 chr9 66321898 66321944 -51540683 + MIR SINE MIR 109 154 -108 2189 114 0 29 chr9 66322001 66322316 -51540311 + AluJo SINE Alu 1 306 -6 211 315 68 0 chr9 66323664 66323737 -51538890 - MIR SINE MIR -140 122 45 25 0 0 0 chr9 66324124 66324149 -51538478 + AT_rich Low_complexity Low_complexity 1 25 0 1789 171 29 3 chr9 66326148 66326463 -51536164 - MLT1A1 LTR MaLR -42 323 1 2126 252 107 10 chr9 66326463 66326587 -51536040 - MLT1A1-int LTR MaLR 0 1735 1624 1646 186 34 3 chr9 66326587 66326882 -51535745 + AluJb SINE Alu 1 304 -8 2126 252 107 10 chr9 66326882 66327443 -51535184 - MLT1A1-int LTR MaLR -111 1624 872 3916 177 50 34 chr9 66327489 66328303 -51534324 - MLT1A1-int LTR MaLR -907 828 2 2202 160 16 27 chr9 66328305 66328674 -51533953 - MLT1A1 LTR MaLR 0 365 1 218 230 14 40 chr9 66329266 66329340 -51533287 + CT-rich Low_complexity Low_complexity 1 72 0 238 227 27 13 chr9 66330070 66330145 -51532482 + (CA)n Simple_repeat Simple_repeat 1 76 0 3089 221 88 87 chr9 66330198 66331053 -51531574 + L1MDb LINE L1 41 952 -5457 457 37 0 0 chr9 66331053 66331107 -51531520 - MADE1 DNA Mariner -26 54 1 3089 221 88 87 chr9 66331107 66331486 -51531141 + L1MDb LINE L1 952 1329 -5080 * 3399 76 6 9 chr9 66331472 66331730 -51530897 + L1PA7 LINE L1 4397 4654 -1500 3399 48 2 0 chr9 66331730 66332124 -51530503 + L1PA7 LINE L1 5757 6151 -3 3399 76 6 9 chr9 66332124 66332314 -51530313 + L1PA7 LINE L1 4654 6154 0 469 210 89 45 chr9 66332333 66332490 -51530137 + LTR41 LTR ERVL 3 166 -607 1000 221 50 8 chr9 66332669 66332909 -51529718 + L1MD2 LINE L1 5779 6028 -331 637 216 52 0 chr9 66333277 66333411 -51529216 - MER45A DNA AcHobo -31 147 7 23 54 0 0 chr9 66334338 66334375 -51528252 + AT_rich Low_complexity Low_complexity 1 37 0 2000 113 24 7 chr9 66334987 66335278 -51527349 - AluSx SINE Alu -15 297 2 296 306 71 48 chr9 66335351 66335704 -51526923 + L1ME4a LINE L1 5733 6093 -28 2291 118 0 0 chr9 66338385 66338689 -51523938 + AluSq SINE Alu 1 304 -9 2064 112 3 45 chr9 66340651 66340987 -51521640 + AluSp SINE Alu 2 313 0 273 287 32 11 chr9 66341278 66341372 -51521255 - MLT1J2 LTR MaLR 0 549 454 246 265 29 0 chr9 66342050 66342118 -51520509 - MLT1L LTR MaLR -539 76 7 1754 195 87 81 chr9 66343516 66344003 -51518624 - MER74A LTR ERVL -30 528 39 495 195 20 33 chr9 66344003 66344141 -51518486 - LTR45B LTR ERV1 0 525 351 231 273 0 15 chr9 66344393 66344459 -51518168 - MER74B LTR ERVL -525 97 33 403 279 127 68 chr9 66345513 66345868 -51516759 - MLT1K LTR MaLR -18 570 195 763 170 7 7 chr9 66346451 66346586 -51516041 + AluJb SINE Alu 2 136 -176 27 29 0 0 chr9 66346586 66346620 -51516007 + AT_rich Low_complexity Low_complexity 1 34 0 452 302 0 0 chr9 66347441 66347547 -51515080 + MER90 LTR ERV1 470 575 0 213 159 11 68 chr9 66347828 66347916 -51514711 + (TAAA)n Simple_repeat Simple_repeat 2 84 0 369 251 58 37 chr9 66348095 66348286 -51514341 - L1ME3A LINE L1 -271 5899 5705 294 220 161 14 chr9 66348729 66348892 -51513735 - L1ME3A LINE L1 -619 5547 5349 527 235 65 13 chr9 66349077 66349230 -51513397 - MLT1J2 LTR MaLR -217 233 73 1405 245 189 31 chr9 66349781 66350295 -51512332 - MLT1G1 LTR MaLR 0 595 1 279 0 0 0 chr9 66350444 66350475 -51512152 + (TG)n Simple_repeat Simple_repeat 2 32 0 659 285 139 24 chr9 66351051 66351381 -51511246 - MLT1J2 LTR MaLR -10 440 73 319 347 39 21 chr9 66351407 66351692 -51510935 - L1M4 LINE L1 -818 5328 5039 302 188 208 0 chr9 66351885 66351981 -51510646 - L1MEd LINE L1 -6002 117 2 301 218 92 0 chr9 66352026 66352113 -51510514 - L1ME LINE L1 -265 5856 5762 487 192 0 67 chr9 66353476 66353669 -51508958 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 234 356 51 0 chr9 66354234 66354352 -51508275 + MIR SINE MIR 16 139 -69 1282 166 24 58 chr9 66356180 66356475 -51506152 + AluY SINE Alu 1 285 -26 2923 226 39 28 chr9 66357096 66357881 -51504746 - L1MDa LINE L1 -3155 3385 2597 204 40 0 0 chr9 66357881 66357906 -51504721 + (TG)n Simple_repeat Simple_repeat 1 25 0 2923 226 39 28 chr9 66357906 66358020 -51504607 - L1MDa LINE L1 -3943 2597 2486 7082 226 56 28 chr9 66358022 66360196 -51502431 + L1MC3 LINE L1 2700 3748 -2398 2074 81 29 7 chr9 66360196 66360469 -51502158 + AluSc SINE Alu 1 279 -30 7082 226 56 28 chr9 66360469 66362172 -51500455 + L1MC3 LINE L1 3748 5403 -743 251 156 188 0 chr9 66363463 66363527 -51499100 - HERVL18 LTR ERVL -951 5096 5021 2184 118 7 7 chr9 66364240 66364546 -51498081 + AluSx SINE Alu 1 306 -6 338 209 0 19 chr9 66364716 66364821 -51497806 + (TGGA)n Simple_repeat Simple_repeat 4 106 0 1062 164 0 4 chr9 66364840 66365366 -51497261 + (TCCA)n Simple_repeat Simple_repeat 1 523 0 3494 120 11 21 chr9 66365616 66366231 -51496396 + MER4B LTR ERV1 3 779 0 283 78 39 0 chr9 66367453 66367504 -51495123 + MER74B LTR ERVL 56 108 -514 2338 109 0 3 chr9 66367622 66367926 -51494701 - AluSx SINE Alu -9 303 1 548 168 142 0 chr9 66367927 66368040 -51494587 - MLT1B LTR MaLR -258 132 4 2326 84 0 3 chr9 66369205 66369504 -51493123 + AluSg SINE Alu 1 298 -12 209 226 19 0 chr9 66369566 66369619 -51493008 + MIR SINE MIR 111 164 -98 306 196 243 0 chr9 66370895 66371002 -51491625 - LTR16C LTR ERVL 0 491 359 1881 162 72 57 chr9 66371809 66372284 -51490343 + MER31A LTR ERV1 4 485 0 246 116 0 0 chr9 66372780 66372823 -51489804 + (TTCA)n Simple_repeat Simple_repeat 1 43 0 993 218 16 41 chr9 66373303 66373369 -51489258 - MLT1E1 LTR MaLR 0 654 588 1856 171 3 3 chr9 66373369 66373684 -51488943 + AluSx SINE Alu 1 312 0 993 218 16 41 chr9 66373684 66373860 -51488767 - MLT1E1 LTR MaLR -66 588 418 696 175 8 24 chr9 66374140 66374266 -51488361 - FLAM_C SINE Alu -18 125 2 321 128 0 0 chr9 66374418 66374465 -51488162 - MLT2C1 LTR ERVL -2 513 467 388 275 0 17 chr9 66374504 66374682 -51487945 + (TCTA)n Simple_repeat Simple_repeat 4 178 0 1449 195 60 37 chr9 66374721 66375069 -51487558 - MLT2C1 LTR ERVL -41 356 1 553 255 174 78 chr9 66375223 66375647 -51486980 - MLT1G LTR MaLR -33 522 103 341 211 163 17 chr9 66376237 66376407 -51486220 - MLT1G1 LTR MaLR 0 595 363 421 222 87 63 chr9 66376569 66376695 -51485932 + L2 LINE L2 3113 3241 -31 244 253 20 50 chr9 66377218 66377317 -51485310 + L1M4 LINE L1 5502 5597 -581 183 257 97 44 chr9 66377390 66377503 -51485124 - L2 LINE L2 -91 3222 3104 334 279 51 40 chr9 66378020 66378279 -51484348 - L1ME LINE L1 -623 5539 5261 1822 266 69 43 chr9 66378371 66380053 -51482574 - L1ME3A LINE L1 -63 6107 4390 3877 216 99 47 chr9 66380069 66382305 -51480322 - L1ME1 LINE L1 -2 6582 4119 1504 244 54 27 chr9 66382564 66382597 -51480030 - L1ME1 LINE L1 -4449 2141 2110 2801 94 3 0 chr9 66382597 66382960 -51479667 + THE1B LTR MaLR 1 364 0 1504 244 54 27 chr9 66382960 66383589 -51479038 - L1ME1 LINE L1 -4480 2110 1348 273 57 0 0 chr9 66383589 66383624 -51479003 + (TG)n Simple_repeat Simple_repeat 2 36 0 968 202 0 6 chr9 66383662 66383835 -51478792 + AluJo SINE Alu 86 257 -55 25 0 0 0 chr9 66383843 66383868 -51478759 + AT_rich Low_complexity Low_complexity 1 25 0 1438 189 0 24 chr9 66383869 66384165 -51478462 - L1ME1 LINE L1 -5291 1273 985 855 129 0 0 chr9 66384260 66384384 -51478243 + FLAM_C SINE Alu 12 135 -8 2876 265 40 33 chr9 66384387 66385273 -51477354 - L1ME1 LINE L1 -5111 934 40 2113 116 0 7 chr9 66385273 66385557 -51477070 - AluSq SINE Alu -3 310 29 2876 265 40 33 chr9 66385557 66385598 -51477029 - L1ME1 LINE L1 -6005 40 1 491 25 12 38 chr9 66386806 66386886 -51475741 + (CA)n Simple_repeat Simple_repeat 2 79 0 330 322 0 34 chr9 66387070 66387216 -51475411 + MIR SINE MIR 71 211 -51 21 36 0 0 chr9 66388107 66388135 -51474492 + AT_rich Low_complexity Low_complexity 1 28 0 589 205 81 74 chr9 66388733 66388991 -51473636 + L1MC5 LINE L1 7538 7797 -164 533 219 49 8 chr9 66389023 66389146 -51473481 - MER53 DNA DNA -57 132 5 236 267 105 9 chr9 66389431 66389536 -51473091 + MIR SINE MIR 77 191 -71 2669 29 3 13 chr9 66389860 66390167 -51472460 + AluY SINE Alu 1 304 -7 2659 145 32 52 chr9 66390707 66390745 -51471882 - L1MA9 LINE L1 -5 6307 6270 3518 139 27 16 chr9 66390745 66391371 -51471256 + L1MA7 LINE L1 5659 6291 0 2659 145 32 52 chr9 66391371 66391694 -51470933 - L1MA9 LINE L1 -42 6270 5958 1648 188 129 93 chr9 66391694 66392284 -51470343 - LTR36 LTR ERV1 0 611 1 2659 145 32 52 chr9 66392284 66392481 -51470146 - L1MA9 LINE L1 -354 5958 5759 4313 132 3 3 chr9 66392893 66393528 -51469099 + MER41B LTR ERV1 1 635 0 2789 213 30 60 chr9 66393614 66394063 -51468564 + MER21B LTR ERV1 11 429 -434 2172 113 10 7 chr9 66394063 66394372 -51468255 - AluSx SINE Alu -2 310 1 2789 213 30 60 chr9 66394372 66394687 -51467940 + MER21B LTR ERV1 429 752 -111 372 280 51 25 chr9 66394750 66394907 -51467720 - MIR SINE MIR -81 181 21 226 293 73 12 chr9 66396232 66396314 -51466313 - L2 LINE L2 -53 3219 3133 751 196 21 0 chr9 66396425 66396568 -51466059 + L1MB2 LINE L1 5640 5785 -549 1563 167 46 0 chr9 66396579 66396884 -51465743 + L1MB2 LINE L1 5851 6169 -2 828 217 38 0 chr9 66397812 66397969 -51464658 + MER20 DNA MER1_type 56 218 -1 2064 132 0 0 chr9 66398515 66398823 -51463804 + AluSg SINE Alu 1 308 0 1074 271 13 23 chr9 66399048 66399354 -51463273 - MLT1E LTR MaLR -11 582 280 328 297 101 7 chr9 66399908 66400046 -51462581 + MIR SINE MIR 13 163 -99 2078 154 0 0 chr9 66400046 66400344 -51462283 - AluSx SINE Alu -14 298 1 315 49 0 0 chr9 66401193 66401234 -51461393 + (TTTTG)n Simple_repeat Simple_repeat 3 43 0 439 259 30 7 chr9 66401781 66401916 -51460711 + (CA)n Simple_repeat Simple_repeat 1 138 0 1512 134 0 8 chr9 66402280 66402527 -51460100 - L1MA9 LINE L1 -370 5942 5698 * 2289 174 11 56 chr9 66402521 66403054 -51459573 + L1 LINE L1 4626 5134 -1012 284 257 40 0 chr9 66403348 66403449 -51459178 + MER5A DNA MER1_type 24 128 -61 3055 96 31 24 chr9 66404875 66405325 -51457302 - MER41A LTR ERV1 -88 466 14 2091 102 16 3 chr9 66405326 66405630 -51456997 - MER41A-int LTR ERV1 -218 5728 5421 3454 151 32 104 chr9 66405730 66406567 -51456060 - MER41B-int LTR ERV1 -3905 3911 3135 4870 150 40 0 chr9 66406610 66407368 -51455259 - MER41B-int LTR ERV1 -5087 859 72 2369 98 0 0 chr9 66407530 66407836 -51454791 + AluSg SINE Alu 1 306 -4 309 158 35 18 chr9 66407872 66407929 -51454698 - MER41B-int LTR ERV1 -5888 58 1 329 126 207 35 chr9 66407938 66408025 -51454602 - MER41B-int LTR ERV1 -5844 102 1 967 91 0 0 chr9 66408025 66408157 -51454470 - MER41B LTR ERV1 0 635 504 3924 173 26 39 chr9 66408170 66409126 -51453501 + pTR5 LTR ERV1 738 2007 -431 290 314 110 0 chr9 66409155 66409273 -51453354 - pTR5 LTR ERV1 -1570 868 738 602 167 0 24 chr9 66409287 66409413 -51453214 + MER41A LTR ERV1 422 544 -10 366 80 0 0 chr9 66411314 66411364 -51451263 + L1MB3 LINE L1 6055 6104 -79 231 222 14 0 chr9 66411378 66411450 -51451177 + (TATAA)n Simple_repeat Simple_repeat 1 73 0 349 212 24 0 chr9 66411549 66411634 -51450993 + L1MB2 LINE L1 6078 6164 -7 239 250 40 53 chr9 66411708 66411784 -51450843 + MLT1H1 LTR MaLR 115 189 -366 746 173 6 0 chr9 66411784 66411946 -51450681 + CT-rich Low_complexity Low_complexity 1 163 0 2111 122 0 10 chr9 66414043 66414338 -51448289 - AluSx SINE Alu -20 292 1 1745 307 115 27 chr9 66414372 66415757 -51446870 - L2 LINE L2 -4 3309 1789 279 226 153 22 chr9 66417389 66417526 -51445101 + MLT2B3 LTR ERVL 18 172 -382 884 213 50 45 chr9 66417596 66417867 -51444760 + MLT2B3 LTR ERVL 219 551 -3 195 42 0 0 chr9 66417867 66417891 -51444736 + (CA)n Simple_repeat Simple_repeat 2 25 0 3668 64 0 0 chr9 66417891 66418346 -51444281 - L1PA8 LINE L1 -8 6164 5710 431 335 29 0 chr9 66418478 66418684 -51443943 - MLT1J2 LTR MaLR -238 212 1 376 209 146 44 chr9 66418908 66419066 -51443561 - L1M4 LINE L1 -1300 4846 4673 738 254 183 52 chr9 66419077 66419513 -51443114 - L1MC/D LINE L1 -381 5803 5328 325 184 0 46 chr9 66420721 66420808 -51441819 + MER53 DNA DNA 2 84 -105 1000 127 19 6 chr9 66421019 66421176 -51441451 + AluSp SINE Alu 1 159 -154 246 310 47 47 chr9 66421597 66421726 -51440901 + L2 LINE L2 3185 3313 0 1757 151 40 68 chr9 66422233 66422631 -51439996 - MLT1B LTR MaLR -2 388 2 1882 271 149 11 chr9 66422666 66423493 -51439134 + MER69 DNA AcHobo 18 958 -1568 397 219 174 7 chr9 66423482 66423637 -51438990 + MER69 DNA AcHobo 2280 2460 -66 * 418 100 38 0 chr9 66424604 66424684 -51437943 + L1MA7 LINE L1 6201 6283 -8 2497 229 30 21 chr9 66425528 66425711 -51436916 - L1M4 LINE L1 -3202 2944 2764 5574 68 1 4 chr9 66425711 66426421 -51436206 + L1PA8 LINE L1 5465 6172 0 2497 229 30 21 chr9 66426421 66427004 -51435623 - L1M4 LINE L1 -3382 2764 2171 2286 106 3 0 chr9 66428107 66428410 -51434217 - AluSx SINE Alu 0 312 9 700 277 28 0 chr9 66428904 66429081 -51433546 + AluJo SINE Alu 115 296 -16 1126 105 33 0 chr9 66629653 66629805 -51232822 - AluSq SINE Alu -156 157 1 2210 166 40 98 chr9 66631385 66631805 -51230822 + MER44D DNA MER2_type 2 435 -2052 2323 97 3 0 chr9 66631805 66632094 -51230533 + AluSx SINE Alu 1 290 -22 2210 166 40 98 chr9 66632094 66632256 -51230371 + MER44D DNA MER2_type 435 605 0 1849 216 15 68 chr9 66632361 66632539 -51230088 + L1M4 LINE L1 4674 4860 -1286 2119 144 0 0 chr9 66632539 66632837 -51229790 - AluSx SINE Alu -14 298 1 1849 216 15 68 chr9 66632837 66632915 -51229712 + L1M4 LINE L1 4860 4941 -1205 872 169 0 0 chr9 66632915 66633045 -51229582 + FLAM_C SINE Alu 1 130 -3 1849 216 15 68 chr9 66633045 66633180 -51229447 + L1M4 LINE L1 4941 5033 -1113 2364 94 0 3 chr9 66633180 66633479 -51229148 + AluY SINE Alu 1 298 -13 1849 216 15 68 chr9 66633479 66633612 -51229015 + L1M4 LINE L1 5033 5172 -974 2065 136 0 0 chr9 66633684 66633963 -51228664 + AluSx SINE Alu 4 282 -30 2334 98 0 0 chr9 66634104 66634401 -51228226 - AluY SINE Alu -14 297 1 320 43 0 0 chr9 66634734 66634780 -51227847 - AluSp/q SINE Alu -2 301 256 2175 113 37 0 chr9 66635152 66635452 -51227175 + AluSq SINE Alu 1 311 -2 470 135 11 22 chr9 66635664 66635753 -51226874 + AluJb SINE Alu 44 131 -181 2006 160 0 0 chr9 66635774 66636081 -51226546 + AluJb SINE Alu 1 307 -5 678 152 0 9 chr9 66636931 66637043 -51225584 + FLAM_C SINE Alu 1 111 -32 1220 216 41 19 chr9 66637251 66637566 -51225061 - MER33 DNA MER1_type -2 322 1 1589 183 3 28 chr9 66637757 66638047 -51224580 + AluJo SINE Alu 30 312 0 2310 165 46 40 chr9 66638168 66638291 -51224336 - LTR42 LTR ERVL 0 495 374 2496 74 3 3 chr9 66638291 66638601 -51224026 + AluSg SINE Alu 1 310 0 2310 165 46 40 chr9 66638601 66638932 -51223695 - LTR42 LTR ERVL -121 374 38 30 27 0 0 chr9 66639042 66639079 -51223548 + AT_rich Low_complexity Low_complexity 1 37 0 789 199 35 0 chr9 66639085 66639226 -51223401 - FRAM SINE Alu -16 150 5 2220 123 0 0 chr9 66639233 66639525 -51223102 - AluSg SINE Alu -18 292 1 216 0 0 0 chr9 66640231 66640255 -51222372 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2269 80 0 3 chr9 66640255 66640541 -51222086 + AluSg SINE Alu 23 307 -3 1508 248 122 58 chr9 66640672 66641081 -51221546 - HAL1 LINE L1 -1253 1254 873 1682 179 0 17 chr9 66641081 66641383 -51221244 - AluJo SINE Alu -15 297 1 1508 248 122 58 chr9 66641383 66641817 -51220810 - HAL1 LINE L1 -1634 873 357 298 252 15 89 chr9 66641819 66641865 -51220762 - HAL1 LINE L1 -2261 246 198 1989 139 0 17 chr9 66641865 66642183 -51220444 + AluSx SINE Alu 1 312 0 298 252 15 89 chr9 66642183 66642271 -51220356 - HAL1 LINE L1 -2309 198 122 856 247 124 120 chr9 66642286 66642621 -51220006 + MLT1G LTR MaLR 15 347 -243 2348 93 3 10 chr9 66642621 66642933 -51219694 - AluSx SINE Alu -2 310 1 866 118 0 52 chr9 66642942 66643078 -51219549 - FLAM_C SINE Alu 0 133 5 856 247 124 120 chr9 66643078 66643092 -51219535 + MLT1G LTR MaLR 354 366 -224 2225 103 0 3 chr9 66643092 66643384 -51219243 - AluSx SINE Alu -21 291 1 856 247 124 120 chr9 66643384 66643611 -51219016 + MLT1G LTR MaLR 366 590 0 1209 146 0 0 chr9 66643615 66643793 -51218834 - AluSg/x SINE Alu 0 312 135 1046 210 46 13 chr9 66643813 66644051 -51218576 + LTR48B LTR ERV1 396 641 -3 1174 100 28 22 chr9 66644198 66644378 -51218249 - L1PA16 LINE L1 -1 6165 5985 316 167 9 74 chr9 66644413 66644449 -51218178 - L1PA16 LINE L1 -139 6027 5990 1975 117 34 3 chr9 66644449 66644747 -51217880 - AluSx SINE Alu -5 307 1 316 167 9 74 chr9 66644747 66644818 -51217809 - L1PA16 LINE L1 -176 5990 5927 2358 71 0 16 chr9 66644818 66645128 -51217499 - AluSc SINE Alu -4 305 1 243 152 0 0 chr9 66645843 66645889 -51216738 - LTR66 LTR ERVL -171 439 394 * 261 109 0 0 chr9 66645851 66645897 -51216730 + LTR66 LTR ERVL 394 439 -171 2424 68 3 3 chr9 66645903 66646198 -51216429 - AluSx SINE Alu -17 295 1 2001 204 62 0 chr9 66646300 66646701 -51215926 + MSTB LTR MaLR 1 426 0 2113 107 38 0 chr9 66647167 66647456 -51215171 - AluSx SINE Alu -12 300 1 2270 103 0 3 chr9 66647679 66647981 -51214646 - AluSq SINE Alu -12 301 1 313 98 0 0 chr9 66648532 66648573 -51214054 - FLAM SINE Alu -7 126 86 3374 164 39 54 chr9 66648573 66649106 -51213521 - L1M4 LINE L1 -404 6278 5738 1511 159 191 3 chr9 66649106 66649389 -51213238 + MER1B DNA MER1_type 2 337 0 3374 164 39 54 chr9 66649389 66650199 -51212428 - L1M4 LINE L1 -944 5738 4955 2082 148 9 3 chr9 66650203 66650548 -51212079 - MST-int LTR MaLR -1304 347 1 * 2116 178 23 42 chr9 66650550 66650602 -51212025 - MSTB LTR MaLR -2 424 373 1870 153 23 13 chr9 66650602 66650910 -51211717 - AluSx SINE Alu -1 311 1 2116 178 23 42 chr9 66650910 66651289 -51211338 - MSTB LTR MaLR -53 373 1 2336 220 64 17 chr9 66651289 66651672 -51210955 - L1M4 LINE L1 -1691 4953 4522 1934 150 0 50 chr9 66651672 66651866 -51210761 - AluJo SINE Alu -8 304 131 2310 101 0 0 chr9 66651866 66652154 -51210473 + AluSg SINE Alu 1 288 -22 1934 150 0 50 chr9 66652154 66652279 -51210348 - AluJo SINE Alu -181 131 1 2336 220 64 17 chr9 66652279 66652542 -51210085 - L1M4 LINE L1 -2122 4522 4273 5372 154 32 59 chr9 66652548 66653108 -51209519 - L1MC1 LINE L1 -5 6328 5755 308 98 0 0 chr9 66653108 66653149 -51209478 + 5S rRNA rRNA 2 42 -79 5372 154 32 59 chr9 66653149 66653625 -51209002 - L1MC1 LINE L1 -578 5755 5292 2216 135 0 0 chr9 66653625 66653929 -51208698 - AluSx SINE Alu -6 306 3 5372 154 32 59 chr9 66653929 66654043 -51208584 - L1MC1 LINE L1 -1041 5292 5176 1772 237 163 33 chr9 66654035 66654391 -51208236 - L1M4 LINE L1 -2362 4282 3974 * 2022 35 151 8 chr9 66654391 66654650 -51207977 - AluY SINE Alu -15 296 1 1772 237 163 33 chr9 66654650 66654894 -51207733 - L1M4 LINE L1 -2670 3974 3763 1085 178 6 0 chr9 66654894 66655068 -51207559 - FAM SINE Alu 0 175 1 1772 237 163 33 chr9 66655068 66655341 -51207286 - L1M4 LINE L1 -2881 3763 3294 2624 123 20 10 chr9 66655344 66655742 -51206885 + MER39B LTR ERV1 3 407 -246 2056 147 13 0 chr9 66655742 66656048 -51206579 - AluSq SINE Alu -3 310 1 289 296 51 20 chr9 66656066 66656262 -51206365 - L1M4 LINE L1 -4180 2466 2265 460 286 48 5 chr9 66656283 66656472 -51206155 - L1M4 LINE L1 -4488 2158 1962 2193 110 10 0 chr9 66656505 66656796 -51205831 + AluSx SINE Alu 1 294 -18 6165 214 47 31 chr9 66656800 66657217 -51205410 - L1M4 LINE L1 -4944 1598 1189 2399 79 0 0 chr9 66657217 66657509 -51205118 + AluY SINE Alu 6 297 -14 6165 214 47 31 chr9 66657509 66658650 -51203977 - L1M4 LINE L1 -5353 1189 16 1163 203 225 9 chr9 66658881 66659009 -51203618 + MSTD LTR MaLR 1 100 -296 2449 75 7 3 chr9 66659009 66659314 -51203313 + AluSp SINE Alu 1 306 -7 1163 203 225 9 chr9 66659314 66659510 -51203117 + MSTD LTR MaLR 100 395 -1 847 76 0 0 chr9 66659796 66659901 -51202726 - U6 snRNA snRNA -2 105 1 21 36 0 0 chr9 66659911 66659939 -51202688 + AT_rich Low_complexity Low_complexity 1 28 0 251 28 28 0 chr9 66660034 66660070 -51202557 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 1815 147 33 4 chr9 66660070 66660342 -51202285 - AluSx SINE Alu -32 280 1 405 282 135 6 chr9 66661042 66661205 -51201422 + MER5A DNA MER1_type 4 187 -2 291 149 127 97 chr9 66661695 66661829 -51200798 + MIR SINE MIR 125 262 0 665 180 79 21 chr9 66661984 66662173 -51200454 + MER63 DNA MER1_type 1 200 -730 512 131 10 0 chr9 66662257 66662356 -51200271 + MER63 DNA MER1_type 871 970 -91 2406 137 32 0 chr9 66662461 66662805 -51199822 + THE1B LTR MaLR 10 364 0 12091 88 8 3 chr9 66662805 66664377 -51198250 + THE1B-int LTR MaLR 1 1580 0 2080 144 67 14 chr9 66664377 66664723 -51197904 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr9 66664746 66664767 -51197860 + AT_rich Low_complexity Low_complexity 1 21 0 2018 109 42 0 chr9 66664777 66665060 -51197567 + AluSq SINE Alu 1 295 -18 33 56 0 0 chr9 66665156 66665210 -51197417 + AT_rich Low_complexity Low_complexity 1 54 0 746 245 50 0 chr9 66665240 66665399 -51197228 - AluJb SINE Alu -12 300 134 2803 10 0 0 chr9 66665844 66666141 -51196486 + AluYb8 SINE Alu 1 297 -21 5352 179 47 32 chr9 66666310 66667171 -51195456 - L1MA10 LINE L1 -8 6326 5480 2493 113 8 3 chr9 66667171 66667533 -51195094 + THE1B LTR MaLR 1 364 0 5352 179 47 32 chr9 66667533 66668106 -51194521 - L1MA10 LINE L1 -854 5480 4917 2014 117 4 4 chr9 66668106 66668380 -51194247 + AluSc SINE Alu 23 296 -13 5352 179 47 32 chr9 66668380 66668629 -51193998 - L1MA10 LINE L1 -1417 4917 2655 285 165 0 33 chr9 66668645 66668736 -51193891 + (TA)n Simple_repeat Simple_repeat 1 88 0 230 229 43 14 chr9 66668774 66668844 -51193783 + L1MDa LINE L1 2484 2555 -3985 204 40 0 0 chr9 66668845 66668870 -51193757 + (TA)n Simple_repeat Simple_repeat 1 25 0 * 243 0 0 0 chr9 66668869 66668896 -51193731 + (GA)n Simple_repeat Simple_repeat 2 28 0 1944 129 0 7 chr9 66668897 66669176 -51193451 - AluSx SINE Alu -35 277 1 1531 249 31 18 chr9 66669181 66669787 -51192840 - L1MEc LINE L1 -3529 2686 2116 * 5263 133 8 0 chr9 66669766 66670560 -51192067 - L1PA16 LINE L1 -3 6232 5433 900 229 96 72 chr9 66670555 66671039 -51191588 - L1PA12 LINE L1 -4956 2620 2182 * 233 385 0 0 chr9 66671663 66671741 -51190886 - L1PA12 LINE L1 -5400 2181 2104 * 319 322 68 8 chr9 66671719 66671837 -51190790 - L1PA12 LINE L1 -5276 2298 2174 727 278 70 67 chr9 66671871 66672317 -51190310 - L1PA12 LINE L1 -6200 1374 928 1040 220 74 22 chr9 66672346 66672669 -51189958 - L1MEc LINE L1 -4273 2123 1784 1066 109 0 0 chr9 66672669 66672806 -51189821 - AluSc SINE Alu -16 293 157 2028 243 54 54 chr9 66673083 66673443 -51189184 + L1 LINE L1 3257 3616 -2530 1652 213 40 6 chr9 66673443 66673796 -51188831 - MLT1A1 LTR MaLR 0 365 1 2028 243 54 54 chr9 66673796 66674232 -51188395 + L1 LINE L1 3615 4053 -2093 486 49 0 0 chr9 66674421 66674482 -51188145 + (CCA)n Simple_repeat Simple_repeat 3 63 0 423 0 0 0 chr9 66675568 66675615 -51187012 + (CA)n Simple_repeat Simple_repeat 1 47 0 1905 222 49 32 chr9 66675615 66676245 -51186382 + L1 LINE L1 4057 4697 -1449 2331 101 0 10 chr9 66676290 66676596 -51186031 - AluSx SINE Alu -9 303 1 325 264 75 21 chr9 66676763 66677002 -51185625 - L1M4 LINE L1 -1438 4708 4457 2141 127 3 0 chr9 66677194 66677485 -51185142 - AluSx SINE Alu -20 292 1 406 294 42 61 chr9 66677567 66677781 -51184846 + L2 LINE L2 2596 2805 -509 2179 107 0 3 chr9 66678157 66678446 -51184181 + AluY SINE Alu 1 288 -23 23 0 0 0 chr9 66678446 66678469 -51184158 + AT_rich Low_complexity Low_complexity 1 23 0 474 229 8 0 chr9 66678469 66678600 -51184027 + L1 LINE L1 5191 5322 -824 604 266 105 60 chr9 66680324 66681026 -51181601 + HSREP522 Satellite telomeric 1 733 -224 2069 111 7 0 chr9 66682026 66682324 -51180303 - AluSx SINE Alu -12 300 1 3779 162 42 8 chr9 66682764 66683430 -51179197 + L1MC1 LINE L1 5451 6139 -194 1926 135 52 39 chr9 66684700 66684909 -51177718 - MLT1B LTR MaLR 0 390 172 2231 91 3 0 chr9 66684909 66685206 -51177421 - AluSp SINE Alu -11 302 5 1926 135 52 39 chr9 66685206 66685381 -51177246 - MLT1B LTR MaLR -218 172 1 2023 104 0 35 chr9 66685493 66685810 -51176817 - AluY SINE Alu -3 308 3 1821 92 96 4 chr9 66686082 66686353 -51176274 + AluSp SINE Alu 2 297 -16 2064 125 3 0 chr9 66686468 66686772 -51175855 - AluSx SINE Alu -7 305 1 2159 97 3 0 chr9 66687242 66687542 -51175085 + AluSc SINE Alu 1 301 -8 2105 110 10 0 chr9 66688034 66688335 -51174292 - AluSg SINE Alu -6 304 1 1215 184 51 30 chr9 66688452 66688484 -51174143 + MER6A DNA MER2_type -8 22 -321 1401 151 88 28 chr9 66688484 66688768 -51173859 - AluJo SINE Alu -11 301 1 1215 184 51 30 chr9 66688768 66689009 -51173618 + MER6A DNA MER2_type 22 266 -77 800 133 15 30 chr9 66688996 66689131 -51173496 + MER6A DNA MER2_type 473 605 0 * 1200 197 43 86 chr9 66689131 66689396 -51173231 - MLT1B LTR MaLR -32 358 110 1882 118 39 0 chr9 66689396 66689675 -51172952 - AluSx SINE Alu -22 290 1 1200 197 43 86 chr9 66689675 66689759 -51172868 - MLT1B LTR MaLR -280 110 24 302 236 28 0 chr9 66690499 66690571 -51172056 + MER5A DNA MER1_type 1 74 -115 890 179 0 6 chr9 66690571 66690727 -51171900 + AluJb SINE Alu 134 288 -24 479 145 13 0 chr9 66690727 66690803 -51171824 + MER5A DNA MER1_type 66 142 -47 629 168 28 89 chr9 66690820 66690966 -51171661 + MER53 DNA DNA 22 175 -14 207 0 0 0 chr9 66690966 66690989 -51171638 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2135 93 0 0 chr9 66690992 66691271 -51171356 - AluSg SINE Alu -31 279 1 629 168 28 89 chr9 66691271 66691299 -51171328 + MER53 DNA DNA 177 189 0 280 163 0 0 chr9 66691301 66691344 -51171283 + MER5A DNA MER1_type 147 189 0 1878 132 21 0 chr9 66692044 66692332 -51170295 + AluJb SINE Alu 1 294 -18 185 0 0 39 chr9 66692416 66692442 -51170185 + (TTTTTA)n Simple_repeat Simple_repeat 6 30 0 1702 123 31 48 chr9 66692831 66692992 -51169635 - AluSq SINE Alu -17 296 141 2247 77 0 0 chr9 66692992 66693279 -51169348 - AluY SINE Alu -24 287 1 1702 123 31 48 chr9 66693279 66693410 -51169217 - AluSq SINE Alu -172 141 9 2234 92 13 0 chr9 66693850 66694155 -51168472 - AluSp SINE Alu -4 309 1 2028 130 0 0 chr9 66694503 66694823 -51167804 + AluSx SINE Alu 1 320 0 1956 124 13 0 chr9 66695476 66695774 -51166853 - AluSx SINE Alu -10 302 1 6819 198 11 25 chr9 66696531 66698106 -51164521 + L1 LINE L1 3192 4745 -1401 2826 131 73 9 chr9 66698269 66698720 -51163907 - LTR12 LTR ERV1 -234 480 1 394 292 83 26 chr9 66698796 66698988 -51163639 - L1M4 LINE L1 -2868 3278 3076 22 56 0 0 chr9 66699122 66699158 -51163469 + AT_rich Low_complexity Low_complexity 1 36 0 236 221 265 0 chr9 66699937 66700005 -51162622 + MER81 DNA DNA 26 111 -3 589 232 14 0 chr9 66700020 66700162 -51162465 - HAL1 LINE L1 -127 2380 2237 284 319 0 9 chr9 66700165 66700281 -51162346 - HAL1 LINE L1 -739 1768 1654 1200 304 120 57 chr9 66701003 66701112 -51161515 - L2 LINE L2 -28 3285 3184 2187 99 7 0 chr9 66701112 66701414 -51161213 + AluSx SINE Alu 1 304 -8 1200 304 120 57 chr9 66701414 66702181 -51160446 - L2 LINE L2 -129 3184 2343 2853 192 50 8 chr9 66702183 66702825 -51159802 - L1 LINE L1 -2298 3848 3180 1590 132 0 8 chr9 66702853 66703103 -51159524 - AluSq SINE Alu -1 312 65 1030 101 40 0 chr9 66703109 66703257 -51159370 + AluSg/x SINE Alu 139 292 -18 459 211 14 68 chr9 66703490 66703637 -51158990 + L1ME1 LINE L1 5730 5868 -298 785 165 0 24 chr9 66703646 66703773 -51158854 + FLAM_C SINE Alu 2 125 -18 2076 106 17 0 chr9 66703786 66704078 -51158549 + AluSx SINE Alu 1 297 -15 2171 107 7 0 chr9 66704730 66705029 -51157598 - AluSx SINE Alu -11 301 1 1319 215 76 101 chr9 66705170 66705747 -51156880 + MER34B LTR ERV1 3 565 0 2276 102 0 3 chr9 66706068 66706373 -51156254 + AluSq SINE Alu 1 304 -9 543 122 8 183 chr9 66706675 66706806 -51155821 + MLT2C1 LTR ERVL 238 345 -52 381 268 144 0 chr9 66706809 66706906 -51155721 + L2 LINE L2 3202 3312 -1 459 257 99 0 chr9 66707040 66707141 -51155486 + L2 LINE L2 3202 3312 -1 414 244 113 16 chr9 66707411 66707717 -51154910 + LTR16A LTR ERVL 43 438 -12 1945 113 14 0 chr9 66707758 66708041 -51154586 - AluSg SINE Alu -22 288 2 24 0 0 0 chr9 66708226 66708250 -51154377 + AT_rich Low_complexity Low_complexity 1 24 0 1929 129 10 3 chr9 66709219 66709514 -51153113 + AluSx SINE Alu 1 297 -15 2119 124 3 0 chr9 66710854 66711160 -51151467 + AluSx SINE Alu 1 307 -5 468 0 0 0 chr9 66711160 66711212 -51151415 + (TA)n Simple_repeat Simple_repeat 2 53 0 2124 94 28 0 chr9 66711585 66711873 -51150754 - AluSg SINE Alu -13 297 2 1230 157 0 5 chr9 66712881 66713079 -51149548 + AluJb SINE Alu 1 197 -115 29 28 0 0 chr9 66713092 66713128 -51149499 + AT_rich Low_complexity Low_complexity 1 36 0 199 371 73 49 chr9 66713204 66713409 -51149218 + L3 LINE CR1 1020 1229 -348 263 245 0 0 chr9 66713574 66713627 -51149000 - MIR SINE MIR -107 155 103 2067 95 0 46 chr9 66713640 66713946 -51148681 + AluSg1 SINE Alu 1 292 -17 1055 200 61 27 chr9 66714298 66714620 -51148007 - LTR26 LTR ERV1 -14 589 277 1231 221 31 65 chr9 66715131 66715452 -51147175 + MER58B DNA MER1_type 28 337 -4 2208 81 10 3 chr9 66716077 66716373 -51146254 - AluY SINE Alu -13 298 1 1941 126 0 3 chr9 66716403 66716704 -51145923 - AluSq SINE Alu -13 300 1 1660 182 89 89 chr9 66716781 66717242 -51145385 - MER65C LTR ERV1 0 461 1 2002 132 0 7 chr9 66718131 66718435 -51144192 + AluSx SINE Alu 1 302 -10 210 232 43 29 chr9 66718906 66718975 -51143652 - MER5A DNA MER1_type -3 186 117 183 80 0 0 chr9 66719041 66719066 -51143561 + (A)n Simple_repeat Simple_repeat 1 25 0 3733 184 44 70 chr9 66719469 66719866 -51142761 + L1MD1 LINE L1 5297 5703 -539 1952 134 0 7 chr9 66719866 66720164 -51142463 + AluSx SINE Alu 1 296 -16 3733 184 44 70 chr9 66720164 66720734 -51141893 + L1MD1 LINE L1 5703 6242 0 2201 84 3 0 chr9 66721030 66721337 -51141290 + AluSp SINE Alu 1 308 0 4366 116 14 2 chr9 66722248 66722867 -51139760 + MER41B LTR ERV1 1 627 -8 959 147 0 29 chr9 66723125 66723295 -51139332 + FRAM SINE Alu 10 174 -2 257 86 0 0 chr9 66723295 66723330 -51139297 - MLT1G LTR MaLR -42 548 514 982 216 71 67 chr9 66723343 66723525 -51139102 + LTR56 LTR ERV1 9 189 -256 1996 113 3 7 chr9 66723525 66723825 -51138802 + AluSc SINE Alu 1 299 -10 982 216 71 67 chr9 66723825 66724077 -51138550 + LTR56 LTR ERV1 189 445 0 474 261 148 11 chr9 66724108 66724284 -51138343 - MLT1G LTR MaLR -80 510 311 * 682 179 74 62 chr9 66724278 66724440 -51138187 + MER21A LTR ERV1 296 459 -472 592 292 42 16 chr9 66724457 66724646 -51137981 - MLT1G LTR MaLR -262 328 135 4298 154 41 91 chr9 66724646 66725023 -51137604 - MER21A LTR ERV1 0 931 537 2358 67 3 0 chr9 66725023 66725321 -51137306 - AluSp SINE Alu -14 299 1 4298 154 41 91 chr9 66725321 66725909 -51136718 - MER21A LTR ERV1 -394 537 14 262 218 10 30 chr9 66725912 66726013 -51136614 + (TATATG)n Simple_repeat Simple_repeat 1 99 0 446 224 82 52 chr9 66726027 66726161 -51136466 - MLT1G LTR MaLR -449 141 4 368 274 161 43 chr9 66726207 66726416 -51136211 + L2 LINE L2 2548 2731 -582 2281 93 0 7 chr9 66726416 66726726 -51135901 + AluSx SINE Alu 1 308 -4 368 274 161 43 chr9 66726726 66726958 -51135669 + L2 LINE L2 2731 3052 -261 457 288 100 80 chr9 66726980 66727431 -51135196 + MLT1H LTR MaLR 57 516 -33 285 380 8 23 chr9 66727473 66727602 -51135025 + L2 LINE L2 3145 3271 -1 2243 100 10 7 chr9 66727662 66727993 -51134634 - AluSp SINE Alu 0 313 1 418 266 139 6 chr9 66728434 66728592 -51134035 + L1ME2 LINE L1 5976 6154 -10 1186 186 65 119 chr9 66729417 66729820 -51132807 + MLT1B LTR MaLR 2 382 -8 288 215 271 19 chr9 66731729 66731836 -51130791 + L1MB7 LINE L1 6044 6177 -1 1706 158 29 7 chr9 66732246 66732525 -51130102 - AluJo SINE Alu -22 290 6 343 325 0 8 chr9 66732651 66732768 -51129859 + (TG)n Simple_repeat Simple_repeat 2 117 0 5894 140 40 21 chr9 66733258 66734075 -51128552 - L1PB2 LINE L1 0 6151 5351 189 0 0 0 chr9 66734075 66734096 -51128531 + (TTA)n Simple_repeat Simple_repeat 2 22 0 5894 140 40 21 chr9 66734096 66734378 -51128249 - L1PB2 LINE L1 -800 5351 5076 2801 116 11 39 chr9 66734378 66734818 -51127809 + MSTA LTR MaLR 1 428 0 5894 140 40 21 chr9 66734818 66735039 -51127588 - L1PB2 LINE L1 -1075 5076 4861 2344 94 0 0 chr9 66735039 66735336 -51127291 - AluY SINE Alu -14 297 1 5894 140 40 21 chr9 66735336 66735760 -51126867 - L1PB2 LINE L1 -1290 4861 4392 324 276 13 64 chr9 66735938 66736178 -51126449 + CT-rich Low_complexity Low_complexity 1 227 0 1217 241 31 15 chr9 66736304 66736694 -51125933 - L1PB2 LINE L1 -2559 3587 3192 2078 124 13 0 chr9 66737451 66737749 -51124878 + AluSx SINE Alu 1 302 -10 2165 124 0 0 chr9 66738402 66738720 -51123907 - AluSx SINE Alu 0 320 3 2189 123 0 0 chr9 66738887 66739171 -51123456 - AluSq SINE Alu -29 284 1 2596 99 96 13 chr9 66739243 66739638 -51122989 - MSTA LTR MaLR 0 428 1 2390 101 0 7 chr9 66739727 66740035 -51122592 - AluSq SINE Alu -7 306 1 2269 107 3 0 chr9 66740818 66741116 -51121511 + AluSg SINE Alu 2 300 -10 4235 83 61 0 chr9 66741359 66741934 -51120693 + LTR66 LTR ERVL 1 610 0 1265 167 59 149 chr9 66743376 66743831 -51118796 + MLT2B1 LTR ERVL 1 414 0 1605 182 44 0 chr9 66743900 66744020 -51118607 + AluSx SINE Alu 1 114 -198 183 42 0 0 chr9 66744020 66744044 -51118583 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1605 182 44 0 chr9 66744044 66744198 -51118429 + AluSx SINE Alu 114 287 -25 2181 123 0 10 chr9 66744320 66744620 -51118007 - AluSx SINE Alu -15 297 1 29 90 0 0 chr9 66744648 66744726 -51117901 + AT_rich Low_complexity Low_complexity 1 78 0 505 248 64 0 chr9 66744832 66745034 -51117593 - HAL1b LINE L1 -169 1179 965 2201 102 7 0 chr9 66745123 66745406 -51117221 - AluSx SINE Alu -19 293 9 2359 92 13 0 chr9 66745728 66746033 -51116594 + AluSp SINE Alu 1 309 -4 1825 130 30 47 chr9 66746465 66746604 -51116023 + AluSq SINE Alu 1 141 -172 2378 77 0 0 chr9 66746604 66746891 -51115736 + AluY SINE Alu 1 287 -24 1825 130 30 47 chr9 66746891 66747052 -51115575 + AluSq SINE Alu 141 296 -17 185 0 0 39 chr9 66747441 66747467 -51115160 + (TAAAAA)n Simple_repeat Simple_repeat 6 30 0 2239 106 0 3 chr9 66747551 66747844 -51114783 - AluY SINE Alu -19 292 1 379 333 31 31 chr9 66748220 66748379 -51114248 - L2 LINE L2 -509 2805 2647 2124 128 3 0 chr9 66748518 66748807 -51113820 + AluSx SINE Alu 1 290 -22 262 267 119 28 chr9 66748874 66749234 -51113393 + L1M4 LINE L1 4316 4708 -1438 196 59 47 71 chr9 66749433 66749518 -51113109 + (TTAAA)n Simple_repeat Simple_repeat 3 85 0 419 294 137 44 chr9 66749815 66750430 -51112197 - L1ME1 LINE L1 -232 5934 5263 2814 131 73 9 chr9 66750481 66750932 -51111695 - LTR12 LTR ERV1 -234 480 1 304 301 49 0 chr9 66751057 66751200 -51111427 - L1ME1 LINE L1 -2921 3225 3076 22 56 0 0 chr9 66751334 66751370 -51111257 + AT_rich Low_complexity Low_complexity 1 36 0 229 221 265 0 chr9 66752149 66752217 -51110410 + MER81 DNA DNA 26 111 -3 598 232 14 0 chr9 66752232 66752374 -51110253 - HAL1 LINE L1 -127 2380 2237 287 319 0 9 chr9 66752377 66752493 -51110134 - HAL1 LINE L1 -739 1768 1654 2315 99 7 0 chr9 66753324 66753626 -51109001 + AluSx SINE Alu 1 304 -8 995 293 101 55 chr9 66753697 66754390 -51108237 - L2 LINE L2 -232 3081 2346 2830 190 58 14 chr9 66754395 66755086 -51107541 - L1 LINE L1 -2298 3848 3128 1679 123 0 0 chr9 66755087 66755315 -51107312 - AluSq SINE Alu -21 292 65 1096 101 40 0 chr9 66755321 66755469 -51107158 + AluSg/x SINE Alu 141 294 -18 469 211 14 68 chr9 66755702 66755849 -51106778 + L1ME1 LINE L1 5730 5868 -298 782 165 0 24 chr9 66755858 66755985 -51106642 + FLAM_C SINE Alu 2 125 -18 2201 106 17 0 chr9 66755998 66756290 -51106337 + AluSx SINE Alu 1 297 -15 2174 124 10 0 chr9 66756944 66757242 -51105385 - AluSx SINE Alu -11 301 1 2261 122 0 3 chr9 66757295 66757606 -51105021 - AluSg SINE Alu 0 310 1 418 272 185 46 chr9 66757737 66758061 -51104566 - HAL1 LINE L1 -741 1766 1398 2551 50 0 0 chr9 66758457 66758756 -51103871 - AluY SINE Alu -12 299 1 25 0 0 0 chr9 66758814 66758839 -51103788 + AT_rich Low_complexity Low_complexity 1 25 0 1792 152 36 4 chr9 66758841 66759118 -51103509 - AluSx SINE Alu -26 286 1 2656 44 0 0 chr9 66760340 66760638 -51101989 - AluY SINE Alu -13 298 1 32 0 0 0 chr9 66760642 66760674 -51101953 + AT_rich Low_complexity Low_complexity 1 32 0 210 154 0 0 chr9 66761198 66761237 -51101390 + T-rich Low_complexity Low_complexity 1 39 0 43331 51 7 1 chr9 66761382 66767218 -51095409 - L1PA4 LINE L1 -277 5878 7 263 268 14 0 chr9 66767223 66767294 -51095333 - L1 LINE L1 -2157 3989 3918 2570 101 96 13 chr9 66767453 66767848 -51094779 + MSTA LTR MaLR 1 428 0 2342 97 23 0 chr9 66767920 66768219 -51094408 + AluSx SINE Alu 1 306 -6 415 291 125 28 chr9 66768382 66768743 -51093884 + L1M4 LINE L1 3322 3717 -2429 1608 148 80 8 chr9 66768770 66769033 -51093594 + AluJo SINE Alu 1 282 -30 1982 121 21 7 chr9 66771156 66771438 -51091189 + AluSx SINE Alu 1 286 -26 348 314 53 50 chr9 66771675 66771978 -51090649 + LTR52-int LTR ERVL 1560 1863 -1693 526 266 26 53 chr9 66772401 66772627 -51090000 + LTR52-int LTR ERVL 2613 2832 -724 3437 143 43 85 chr9 66772971 66773472 -51089155 + LTR58 LTR ERV1 1 467 -212 3100 57 119 5 chr9 66773472 66773908 -51088719 + LTR19A LTR ERV1 1 486 0 3437 143 43 85 chr9 66773908 66774100 -51088527 + LTR58 LTR ERV1 467 665 -14 2188 117 0 3 chr9 66774358 66774657 -51087970 - AluSx SINE Alu -14 298 1 1709 166 41 0 chr9 66775147 66775437 -51087190 + AluJb SINE Alu 1 302 -10 200 222 0 16 chr9 66775735 66775798 -51086829 + (TATG)n Simple_repeat Simple_repeat 3 64 0 2314 97 3 7 chr9 66775810 66776110 -51086517 + AluSg SINE Alu 1 299 -11 265 315 96 27 chr9 66776285 66776431 -51086196 - MIR3 SINE MIR 0 208 53 285 340 160 7 chr9 66776515 66776659 -51085968 - MIR SINE MIR -49 213 48 26 0 0 0 chr9 66776708 66776734 -51085893 + AT_rich Low_complexity Low_complexity 1 26 0 217 293 49 24 chr9 66777522 66777604 -51085023 - MIR3 SINE MIR -2 206 123 562 287 55 8 chr9 66777917 66778171 -51084456 + L1MC4a LINE L1 5907 6172 -1636 837 187 23 0 chr9 66778193 66778364 -51084263 + L1MC4a LINE L1 6420 6594 -1214 470 285 207 4 chr9 66778970 66779226 -51083401 + L3 LINE CR1 1193 1500 -77 729 307 66 26 chr9 66779450 66779823 -51082804 + L1MEc LINE L1 1100 1513 -4883 2437 99 0 0 chr9 66779823 66780125 -51082502 + AluSg SINE Alu 1 302 -8 729 307 66 26 chr9 66780125 66780415 -51082212 + L1MEc LINE L1 1513 1790 -4606 2489 64 0 0 chr9 66780415 66780712 -51081915 + AluY SINE Alu 1 297 -14 2344 101 0 10 chr9 66780718 66781025 -51081602 + AluSc SINE Alu 1 304 -5 2013 143 43 18 chr9 66781070 66781399 -51081228 + MER1B DNA MER1_type 1 337 0 1592 195 90 63 chr9 66782073 66782561 -51080066 - LTR10B LTR ERV1 0 505 5 8662 239 39 26 chr9 66782565 66784800 -51077827 - LTR10B-int LTR ERV1 0 6649 4388 272 282 101 58 chr9 66784653 66784841 -51077786 - HERVKC4 LTR ERVK -2170 3092 2897 * 1880 122 45 3 chr9 66784989 66785277 -51077350 - AluY SINE Alu -2 309 10 2303 87 42 0 chr9 66785546 66785835 -51076792 - AluSx SINE Alu -11 301 1 2184 149 0 0 chr9 66785846 66786189 -51076438 + HERVI LTR ERV1 5209 5551 -2234 * 11286 180 37 22 chr9 66786165 66787463 -51075164 - HERVI LTR ERV1 -5530 2255 978 2462 71 0 3 chr9 66787463 66787759 -51074868 - AluY SINE Alu -16 295 1 11286 180 37 22 chr9 66787759 66788016 -51074611 - HERVI LTR ERV1 -6807 978 726 2334 100 0 0 chr9 66788016 66788307 -51074320 - AluY SINE Alu -20 291 1 11286 180 37 22 chr9 66788307 66788972 -51073655 - HERVI LTR ERV1 -7059 726 1 1619 199 92 55 chr9 66788972 66789459 -51073168 - LTR10B LTR ERV1 0 505 1 447 19 0 0 chr9 66789703 66789755 -51072872 + (TCTA)n Simple_repeat Simple_repeat 2 53 0 5741 114 23 35 chr9 66789758 66790123 -51072504 + MER4D LTR ERV1 1 369 -534 2267 131 0 3 chr9 66790123 66790436 -51072191 - AluSq SINE Alu 0 313 2 5741 114 23 35 chr9 66790436 66790981 -51071646 + MER4D LTR ERV1 369 900 -3 551 15 15 0 chr9 66790982 66791050 -51071577 + (TCTA)n Simple_repeat Simple_repeat 4 72 0 994 99 0 7 chr9 66791051 66791193 -51071434 + MER4A LTR ERV1 2 142 -522 * 997 91 0 0 chr9 66791182 66791314 -51071313 + MER4B LTR ERV1 452 583 -27 * 1041 176 20 0 chr9 66791310 66791509 -51071118 - MLT2D LTR ERVL -51 363 161 315 216 103 76 chr9 66791509 66791694 -51070933 - MER34C LTR ERV1 0 585 396 1731 129 3 105 chr9 66791695 66791747 -51070880 + AluJb SINE Alu 1 57 -255 4109 94 5 0 chr9 66791747 66792298 -51070329 - MER41A LTR ERV1 0 554 1 1731 129 3 105 chr9 66792298 66792577 -51070050 + AluJb SINE Alu 57 298 -14 438 251 58 38 chr9 66792597 66792946 -51069681 - MER34 LTR ERV1 -196 369 1 * 870 176 6 6 chr9 66792946 66793110 -51069517 - MLT2D LTR ERVL -250 164 1 2334 98 0 0 chr9 66793544 66793840 -51068787 - AluSx SINE Alu -11 301 6 2063 116 0 35 chr9 66794093 66794404 -51068223 - AluY SINE Alu -11 300 1 2102 136 3 10 chr9 66795081 66795382 -51067245 - AluSx SINE Alu -13 299 1 258 296 96 30 chr9 66796110 66796123 -51066504 - MER67D LTR ERV1 -3 511 500 2185 136 0 0 chr9 66796123 66796425 -51066202 + AluSx SINE Alu 1 302 -10 258 296 96 30 chr9 66796425 66796546 -51066081 - MER67D LTR ERV1 -14 500 368 1949 159 0 0 chr9 66796552 66796876 -51065751 + AluJb SINE Alu 1 324 0 980 183 24 0 chr9 66796881 66797045 -51065582 + AluJb SINE Alu 140 307 -5 1389 139 185 21 chr9 66797067 66797398 -51065229 - MER67C LTR ERV1 -243 271 12 1858 160 197 2 chr9 66797617 66798023 -51064604 - MER31A LTR ERV1 0 485 1 1551 164 19 26 chr9 66798522 66798834 -51063793 + MER89 LTR ERV1 1 310 -249 2021 156 30 3 chr9 66799955 66800326 -51062301 - MLT1B LTR MaLR -4 386 6 200 239 62 133 chr9 66800429 66800542 -51062085 - MIR SINE MIR -62 146 42 2014 130 23 10 chr9 66800780 66801088 -51061539 + AluSx SINE Alu 1 312 0 183 42 0 0 chr9 66801474 66801498 -51061129 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 543 96 39 10 chr9 66801503 66801607 -51061020 + CT-rich Low_complexity Low_complexity 2 108 0 1653 205 10 10 chr9 66801611 66801923 -51060704 - AluJo SINE Alu 0 312 1 324 259 13 44 chr9 66801925 66802083 -51060544 - L1M4 LINE L1 -1490 4656 4504 2290 129 0 0 chr9 66802083 66802393 -51060234 - AluSx SINE Alu -2 310 1 2110 116 3 29 chr9 66802531 66802842 -51059785 - AluSg SINE Alu -7 303 1 384 243 57 133 chr9 66802844 66802902 -51059725 - L1M4 LINE L1 -1816 4330 4269 1825 135 60 0 chr9 66802902 66803169 -51059458 - AluJb SINE Alu -15 297 15 384 243 57 133 chr9 66803169 66803410 -51059217 - L1M4 LINE L1 -1877 4269 4054 271 330 170 15 chr9 66803571 66803841 -51058786 + L2 LINE L2 2136 2447 -867 2356 101 0 0 chr9 66803853 66804149 -51058478 - AluSx SINE Alu -14 298 3 2110 116 3 29 chr9 66804289 66804600 -51058027 - AluSg SINE Alu -7 303 1 1825 135 60 0 chr9 66804660 66804927 -51057700 - AluJb SINE Alu -15 297 15 237 310 32 60 chr9 66804947 66805295 -51057332 - L1M4 LINE L1 -1869 4277 3940 269 297 10 0 chr9 66805299 66805400 -51057227 + HAL1 LINE L1 1724 1825 -682 266 94 0 19 chr9 66806282 66806335 -51056292 + Alu SINE Alu 251 302 0 482 295 80 49 chr9 66806382 66806579 -51056048 + ERVL LTR ERVL 2300 2510 -3254 2224 118 3 3 chr9 66806579 66806876 -51055751 - AluSx SINE Alu -15 297 1 482 295 80 49 chr9 66806876 66806966 -51055661 + ERVL LTR ERVL 2510 2596 -3168 2474 92 3 0 chr9 66807743 66808048 -51054579 - AluSp SINE Alu -5 308 3 308 209 143 19 chr9 66808054 66808159 -51054468 - L1M4 LINE L1 -3795 2351 2234 2255 109 7 3 chr9 66808398 66808701 -51053926 + AluSc SINE Alu 1 304 -5 228 258 122 42 chr9 66808733 66808946 -51053681 - L1M4 LINE L1 -1355 4791 4562 730 268 137 27 chr9 66810059 66810656 -51051971 - L2 LINE L2 -18 3295 2585 304 322 124 34 chr9 66810846 66811144 -51051483 + L2 LINE L2 2947 3271 -1 217 309 156 23 chr9 66814058 66814212 -51048415 - L2 LINE L2 -41 3272 3140 1965 167 0 3 chr9 66814212 66814511 -51048116 + AluJb SINE Alu 1 298 -14 217 309 156 23 chr9 66814511 66814663 -51047964 - L2 LINE L2 -173 3140 2925 195 313 83 10 chr9 66814708 66814804 -51047823 + L2 LINE L2 3169 3271 -1 380 299 294 5 chr9 66814842 66815063 -51047564 - L2 LINE L2 -543 2771 2487 312 308 95 49 chr9 66815165 66815428 -51047199 - L1ME4a LINE L1 -4 6117 5843 223 291 197 20 chr9 66815714 66815917 -51046710 + MIR SINE MIR 23 261 -1 2465 80 0 10 chr9 66817337 66817648 -51044979 + AluSg SINE Alu 1 308 -2 999 234 150 6 chr9 66817682 66818016 -51044611 + L1MC4a LINE L1 5371 5752 -2056 399 285 146 8 chr9 66818049 66818316 -51044311 + L1MC4a LINE L1 5830 6133 -1675 268 275 69 8 chr9 66818404 66818535 -51044092 + L1ME LINE L1 5680 5818 -303 2051 133 0 10 chr9 66818547 66818856 -51043771 + AluSx SINE Alu 1 306 -6 889 267 54 41 chr9 66818857 66819151 -51043476 + L1ME LINE L1 4879 5168 -996 2178 141 0 0 chr9 66819151 66819455 -51043172 + AluSx SINE Alu 1 304 -8 889 267 54 41 chr9 66819455 66819861 -51042766 + L1ME LINE L1 5168 5592 -572 662 161 71 0 chr9 66819884 66819996 -51042631 - FLAM_C SINE Alu -23 120 1 255 61 0 0 chr9 66820075 66820108 -51042519 + (T)n Simple_repeat Simple_repeat 1 33 0 4244 220 44 37 chr9 66820291 66820558 -51042069 + L1 LINE L1 3884 4148 -1998 192 40 0 0 chr9 66820558 66820583 -51042044 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 2409 88 0 0 chr9 66820583 66820878 -51041749 + AluSx SINE Alu 1 295 -17 4244 220 44 37 chr9 66820878 66821704 -51040923 + L1 LINE L1 4148 4966 -1180 2074 113 0 71 chr9 66821704 66822030 -51040597 + AluSx SINE Alu 3 305 -7 4244 220 44 37 chr9 66822030 66822120 -51040507 + L1 LINE L1 4966 5081 -1065 2294 115 0 0 chr9 66822120 66822415 -51040212 - AluSc SINE Alu -14 295 1 4244 220 44 37 chr9 66822415 66822473 -51040154 + L1 LINE L1 5081 5137 -1009 * 6186 136 31 34 chr9 66822467 66822891 -51039736 + L1MA5A LINE L1 4133 4556 -1741 2441 91 3 0 chr9 66822891 66823200 -51039427 + AluSx SINE Alu 2 311 -1 6186 136 31 34 chr9 66823200 66824931 -51037696 + L1MA5A LINE L1 4556 6291 -6 283 260 42 0 chr9 66824935 66825031 -51037596 + L1 LINE L1 5122 5221 -925 267 206 0 0 chr9 66825007 66825075 -51037552 + L1MDa LINE L1 1604 1671 -4869 * 276 176 0 43 chr9 66825056 66825142 -51037485 + L1MDa LINE L1 2588 2650 -3890 766 183 41 0 chr9 66825146 66825315 -51037312 + L1MC3 LINE L1 6829 7004 -781 * 3189 130 16 64 chr9 66825313 66825748 -51036879 + L1P5 LINE L1 5042 5428 -728 2207 101 0 16 chr9 66825748 66826066 -51036561 + AluSp SINE Alu 1 313 0 3189 130 16 64 chr9 66826066 66826436 -51036191 + L1P5 LINE L1 5428 5814 -342 2694 131 21 63 chr9 66826436 66826957 -51035670 - LTR14 LTR ERVK 0 548 50 559 125 0 0 chr9 66827057 66827137 -51035490 + AluSq SINE Alu 89 168 -145 2576 181 20 29 chr9 66827138 66827689 -51034938 + L1PA16 LINE L1 5621 6166 0 2241 98 0 0 chr9 66827852 66828147 -51034480 - AluSc SINE Alu -14 295 1 21 0 0 0 chr9 66828507 66828528 -51034099 + AT_rich Low_complexity Low_complexity 1 21 0 226 317 73 54 chr9 66828961 66829290 -51033337 + L2 LINE L2 2744 3106 -166 1020 224 235 18 chr9 66830113 66830559 -51032068 - L1MC4 LINE L1 -681 7361 6819 345 233 49 20 chr9 66831119 66831304 -51031323 - HSAT5 Satellite Satellite 0 190 1 276 233 13 37 chr9 66831503 66831665 -51030962 - HSAT5 Satellite Satellite 0 158 1 218 236 0 18 chr9 66832073 66832128 -51030499 + (CATA)n Simple_repeat Simple_repeat 2 55 0 1316 153 31 49 chr9 66832371 66832697 -51029930 - SN5 Other centromeric -18 437 118 1482 168 40 69 chr9 66832719 66833095 -51029532 + MST-int LTR MaLR 1287 1651 0 273 204 78 68 chr9 66833095 66833198 -51029429 + MSTA LTR MaLR 1 104 -324 317 262 0 0 chr9 66833267 66833328 -51029299 + MSTA LTR MaLR 95 155 -273 1495 221 3 32 chr9 66833335 66833679 -51028948 + MSTA-int LTR MaLR 1318 1651 0 412 208 10 0 chr9 66833679 66833775 -51028852 + MSTA LTR MaLR 1 97 -331 271 214 18 0 chr9 66833864 66833920 -51028707 + MSTA-int LTR MaLR 911 967 -613 * 800 185 284 0 chr9 66833908 66834130 -51028497 - THE1-int LTR MaLR -389 1191 907 927 212 97 31 chr9 66834134 66834393 -51028234 + MSTA LTR MaLR 76 351 -77 488 219 183 7 chr9 66834432 66834569 -51028058 - MST-int LTR MaLR -984 667 507 * 6260 228 50 29 chr9 66834567 66836158 -51026469 + MSTA-int LTR MaLR 28 1651 0 373 248 80 9 chr9 66836251 66836364 -51026263 + MSTA LTR MaLR 58 178 -250 1473 193 0 53 chr9 66836364 66836706 -51025921 + MSTA-int LTR MaLR 1328 1651 0 467 181 32 0 chr9 66836706 66836800 -51025827 + MSTA LTR MaLR 1 97 -331 249 250 18 0 chr9 66836892 66836948 -51025679 + THE1-int LTR MaLR 910 966 -614 756 226 174 22 chr9 66836950 66837180 -51025447 - MST-int LTR MaLR -411 1240 976 608 263 81 10 chr9 66837185 66837383 -51025244 + MSTA LTR MaLR 76 287 -141 343 174 19 26 chr9 66837367 66837459 -51025168 - HSAT5 Satellite Satellite -1 91 1 * 240 238 48 36 chr9 66837576 66837660 -51024967 - HSAT5 Satellite Satellite -1 85 1 360 235 0 12 chr9 66837721 66837820 -51024807 - HSAT5 Satellite Satellite -3 97 1 418 151 0 67 chr9 66838039 66838140 -51024487 - HSAT5 Satellite Satellite 0 94 1 1714 117 12 4 chr9 66844685 66844941 -51017686 + AluSq SINE Alu 6 263 -50 189 74 0 0 chr9 66844962 66844989 -51017638 + (CA)n Simple_repeat Simple_repeat 2 28 0 22 194 0 0 chr9 66846065 66846101 -51016526 + AT_rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr9 66846110 66846136 -51016491 + AT_rich Low_complexity Low_complexity 1 26 0 2272 65 0 19 chr9 66846534 66846843 -51015784 - AluY SINE Alu -4 307 5 324 50 0 0 chr9 66846927 66846967 -51015660 - L1PA10 LINE L1 -11 6157 6118 2138 98 0 0 chr9 66846967 66847263 -51015364 - AluY SINE Alu -15 296 1 500 84 24 12 chr9 66847263 66847346 -51015281 - LTR56 LTR ERV1 -361 84 1 601 260 50 65 chr9 66847350 66847673 -51014954 - L1M4 LINE L1 -775 5371 5054 1277 205 94 41 chr9 66847734 66848075 -51014552 + MER31A LTR ERV1 127 485 0 866 238 97 0 chr9 66848083 66848331 -51014296 + L1M4 LINE L1 4680 4951 -1195 1766 111 11 4 chr9 66848373 66848634 -51013993 + AluSq SINE Alu 1 263 -50 189 74 0 0 chr9 66848655 66848682 -51013945 + (CA)n Simple_repeat Simple_repeat 2 28 0 2275 65 0 19 chr9 66850024 66850333 -51012294 - AluY SINE Alu -4 307 5 324 50 0 0 chr9 66850417 66850457 -51012170 - L1PA10 LINE L1 -11 6157 6118 2127 98 0 0 chr9 66850457 66850753 -51011874 - AluY SINE Alu -15 296 1 485 96 24 12 chr9 66850753 66850836 -51011791 - LTR56 LTR ERV1 -361 84 1 1455 246 100 37 chr9 66850840 66851200 -51011427 - L1M4 LINE L1 -775 5371 5035 2376 47 0 7 chr9 66851200 66851498 -51011129 - AluY SINE Alu -15 296 1 1455 246 100 37 chr9 66851498 66851788 -51010839 - L1M4 LINE L1 -1111 5035 4680 1489 213 68 66 chr9 66851796 66852280 -51010347 - MER31A LTR ERV1 0 485 1 2612 236 91 28 chr9 66852281 66853341 -51009286 - L1M4 LINE L1 -2007 4139 3014 1588 232 57 2 chr9 66853352 66853882 -51008745 - L1M4 LINE L1 -2974 3172 2614 369 284 69 47 chr9 66854497 66854729 -51007898 + L2 LINE L2 2450 2690 -624 1763 163 0 3 chr9 66854729 66855029 -51007598 - AluJo SINE Alu -13 299 1 369 284 69 47 chr9 66855029 66855071 -51007556 + L2 LINE L2 2690 2730 -584 286 256 70 101 chr9 66856990 66857119 -51005508 + MIR SINE MIR 28 152 -56 1050 116 6 11 chr9 66857273 66857454 -51005173 + (TTC)n Simple_repeat Simple_repeat 1 180 0 2146 122 0 0 chr9 66857457 66857769 -51004858 - AluSx SINE Alu 0 312 1 28 0 0 0 chr9 66858898 66858926 -51003701 + AT_rich Low_complexity Low_complexity 1 28 0 1638 254 54 26 chr9 66858928 66859428 -51003199 - L1ME1 LINE L1 -35 6131 5618 765 261 15 15 chr9 66859533 66859732 -51002895 - L1ME LINE L1 -514 5652 5454 967 178 0 0 chr9 66859768 66859925 -51002702 + FRAM SINE Alu 1 151 -25 803 262 18 39 chr9 66859937 66860219 -51002408 - L1ME1 LINE L1 -4 6162 5887 2482 62 0 0 chr9 66860298 66860607 -51002020 - AluY SINE Alu -2 309 1 1999 133 0 0 chr9 66860689 66860975 -51001652 - AluSx SINE Alu -26 286 1 1292 238 213 39 chr9 66861248 66862104 -51000523 - HAL1 LINE L1 -703 1804 800 249 284 15 0 chr9 66862139 66862206 -51000421 - AluJ/FLAM SINE Alu -234 68 1 265 248 26 18 chr9 66864546 66864565 -50998062 - L1MA4A LINE L1 -1 6302 6284 4810 166 12 13 chr9 66864565 66865035 -50997592 - L1PB4 LINE L1 -3 6153 5683 2326 72 0 7 chr9 66865035 66865340 -50997287 - AluY SINE Alu -8 303 1 4810 166 12 13 chr9 66865340 66865787 -50996840 - L1PB4 LINE L1 -473 5683 5237 439 280 0 8 chr9 66868199 66868317 -50994310 + MIR SINE MIR 23 139 -123 198 83 28 56 chr9 66868454 66868490 -50994137 - MER5B DNA MER1_type -143 35 1 261 295 134 18 chr9 66868579 66868691 -50993936 - L2 LINE L2 0 3313 3189 1891 236 48 34 chr9 66868809 66869462 -50993165 + L1MC2 LINE L1 4142 4803 -1343 1961 184 37 36 chr9 66869465 66869772 -50992855 + L1MC2 LINE L1 4877 5182 -1162 2317 89 0 0 chr9 66869772 66870074 -50992553 + AluSc SINE Alu 1 302 -7 1961 184 37 36 chr9 66870074 66870329 -50992298 + L1MC2 LINE L1 5182 5435 -909 2293 159 46 22 chr9 66870329 66870745 -50991882 + MSTB LTR MaLR 1 426 0 1961 184 37 36 chr9 66870745 66871473 -50991154 + L1MC2 LINE L1 5435 6334 -10 246 298 83 0 chr9 66871887 66871971 -50990656 + MIR3 SINE MIR 117 207 -1 947 227 30 10 chr9 66872091 66872289 -50990338 - MER58A DNA MER1_type 0 224 23 395 202 11 0 chr9 66872328 66872422 -50990205 + GA-rich Low_complexity Low_complexity 3 97 0 207 288 31 110 chr9 66872475 66872623 -50990004 - L2 LINE L2 -14 3258 3116 2937 203 33 32 chr9 66873071 66873264 -50989363 - L1MD2 LINE L1 -353 6266 6075 2372 103 0 3 chr9 66873264 66873575 -50989052 - AluSg SINE Alu 0 310 1 2937 203 33 32 chr9 66873575 66874070 -50988557 - L1MD2 LINE L1 -544 6075 5577 1576 171 43 23 chr9 66874074 66874509 -50988118 - AluJb SINE Alu 0 441 1 1715 229 37 35 chr9 66874532 66874861 -50987766 - L1MD2 LINE L1 -953 5453 5126 3878 36 0 7 chr9 66874861 66875306 -50987321 + L1PA4 LINE L1 5714 6155 0 1715 229 37 35 chr9 66875306 66875457 -50987170 - L1MD2 LINE L1 -1280 5126 4969 705 189 39 8 chr9 66875457 66875584 -50987043 - FLAM_A SINE Alu -2 131 1 1715 229 37 35 chr9 66875584 66875671 -50986956 - L1MD2 LINE L1 -1437 4969 4884 773 96 0 0 chr9 66875700 66875794 -50986833 + AluS SINE Alu 2 95 -217 2168 122 3 3 chr9 66875821 66876133 -50986494 + AluSx SINE Alu 1 312 0 4795 243 35 60 chr9 66876168 66878057 -50984570 - L1MD2 LINE L1 -1526 4880 3040 4634 214 88 34 chr9 66878052 66878515 -50984112 - L1MD2 LINE L1 -3609 2797 2361 * 1944 130 7 17 chr9 66878515 66878815 -50983812 - AluSx SINE Alu -15 297 1 4634 214 88 34 chr9 66878815 66879601 -50983026 - L1MD2 LINE L1 -4045 2361 1620 2230 121 3 3 chr9 66879601 66879907 -50982720 - AluSx SINE Alu -6 306 1 4634 214 88 34 chr9 66879907 66880520 -50982107 - L1MD2 LINE L1 -4786 1620 822 2386 103 3 0 chr9 66880540 66880850 -50981777 - AluSp SINE Alu -2 311 1 265 232 0 0 chr9 66880850 66880906 -50981721 - L1MD2 LINE L1 -5573 836 781 327 302 24 48 chr9 66881114 66881240 -50981387 - L1MD2 LINE L1 -6091 318 196 908 280 47 13 chr9 66882280 66882598 -50980029 + LTR40c LTR ERVL 1 329 -136 277 211 120 115 chr9 66883137 66883346 -50979281 - MLT1J1 LTR MaLR -234 212 3 561 287 21 36 chr9 66883356 66883635 -50978992 - HAL1b LINE L1 -922 426 152 1529 174 0 51 chr9 66883736 66884029 -50978598 - AluJo SINE Alu -18 294 17 592 262 116 21 chr9 66884048 66884120 -50978507 - MER112 DNA MER1_type -5 255 191 2287 232 49 46 chr9 66884120 66884711 -50977916 - MLT1E LTR MaLR 0 593 1 592 262 116 21 chr9 66884711 66884816 -50977811 - MER112 DNA MER1_type -69 191 97 270 0 0 0 chr9 66884816 66884846 -50977781 + (TG)n Simple_repeat Simple_repeat 1 30 0 592 262 116 21 chr9 66884846 66884900 -50977727 - MER112 DNA MER1_type -163 97 1 1984 139 0 3 chr9 66885868 66886155 -50976472 - AluJo SINE Alu -10 302 17 368 67 17 0 chr9 66886762 66886822 -50975805 + (TA)n Simple_repeat Simple_repeat 1 61 0 2282 101 0 0 chr9 66886824 66887111 -50975516 - AluSq SINE Alu -26 287 1 2215 98 7 7 chr9 66888600 66888906 -50973721 + AluSq SINE Alu 1 306 -7 2084 119 40 45 chr9 66888906 66889200 -50973427 + L1MB2 LINE L1 5827 6122 -49 2013 110 57 0 chr9 66889200 66889481 -50973146 + AluSx SINE Alu 1 297 -15 2084 119 40 45 chr9 66889481 66889530 -50973097 + L1MB2 LINE L1 6122 6170 -1 1816 158 31 0 chr9 66889634 66889926 -50972701 + AluSx SINE Alu 1 301 -11 519 313 120 8 chr9 66890104 66890702 -50971925 + L1MC5 LINE L1 3527 4191 -1955 536 294 150 11 chr9 66891155 66891502 -50971125 + L1MC5 LINE L1 5409 5803 -2005 21 0 0 0 chr9 66891978 66891999 -50970628 + AT_rich Low_complexity Low_complexity 1 21 0 1899 119 65 4 chr9 66892209 66892487 -50970140 - AluSx SINE Alu -17 295 1 1049 203 100 138 chr9 66892603 66893205 -50969422 + L1MC5 LINE L1 6652 7220 -741 1970 159 7 0 chr9 66893205 66893507 -50969120 + AluJo SINE Alu 1 304 -8 1049 203 100 138 chr9 66893507 66893667 -50968960 + L1MC5 LINE L1 7220 7385 -576 2223 118 3 0 chr9 66893900 66894205 -50968422 + AluSx SINE Alu 1 306 -6 195 42 0 0 chr9 66894270 66894294 -50968333 + (TG)n Simple_repeat Simple_repeat 2 25 0 772 284 38 4 chr9 66894531 66894770 -50967857 - MIR SINE MIR -3 259 13 974 277 102 34 chr9 66895293 66895381 -50967246 + Charlie7 DNA MER1_type 1637 1718 -894 2388 87 0 0 chr9 66895381 66895690 -50966937 + AluY SINE Alu 1 309 -2 974 277 102 34 chr9 66895690 66896382 -50966245 + Charlie7 DNA MER1_type 1718 2545 -67 255 31 0 0 chr9 66896624 66896656 -50965971 + (CA)n Simple_repeat Simple_repeat 1 32 0 380 272 80 25 chr9 66897034 66897196 -50965431 - MER5B DNA MER1_type -3 175 5 280 159 0 0 chr9 66897851 66897895 -50964732 - MER5A DNA MER1_type -144 45 2 224 325 141 38 chr9 66897895 66897992 -50964635 - L2 LINE L2 -680 2634 2548 2418 197 64 32 chr9 66897992 66898031 -50964596 - MLT2B1 LTR ERVL -1 519 483 243 0 0 0 chr9 66898031 66898058 -50964569 + (TG)n Simple_repeat Simple_repeat 2 28 0 2418 197 64 32 chr9 66898058 66898521 -50964106 - MLT2B1 LTR ERVL -37 483 1 224 325 141 38 chr9 66898521 66898956 -50963671 - L2 LINE L2 -766 2548 2047 701 264 23 63 chr9 66899249 66899483 -50963144 - MER41E LTR ERV1 0 512 290 2254 54 7 4 chr9 66899483 66899901 -50962726 - AluY SINE Alu 0 419 1 701 264 23 63 chr9 66899901 66899964 -50962663 - MER41E LTR ERV1 -222 290 226 207 142 39 77 chr9 66900576 66900731 -50961896 + (GTGTG)n Simple_repeat Simple_repeat 5 153 0 822 189 47 0 chr9 66900947 66901116 -50961511 + MER82 DNA MER2_type 28 204 -449 2250 77 21 0 chr9 66901255 66901540 -50961087 - AluSg SINE Alu -19 291 1 1041 211 0 5 chr9 66901709 66901894 -50960733 + MER82 DNA MER2_type 198 381 -272 31 0 0 0 chr9 66903098 66903129 -50959498 + AT_rich Low_complexity Low_complexity 1 31 0 183 42 0 0 chr9 66903335 66903359 -50959268 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2333 83 3 10 chr9 66903365 66903665 -50958962 + AluSp SINE Alu 3 300 -13 1124 241 34 0 chr9 66904012 66904278 -50958349 + MER82 DNA MER2_type 370 644 -9 279 259 37 19 chr9 66904282 66904390 -50958237 + HAL1 LINE L1 1684 1793 -714 534 305 113 49 chr9 66904396 66904540 -50958087 + HAL1 LINE L1 1897 2030 -477 2289 112 3 6 chr9 66904540 66904854 -50957773 + AluSp SINE Alu 1 313 0 534 305 113 49 chr9 66904854 66905283 -50957344 + HAL1 LINE L1 2030 2507 0 2256 104 10 7 chr9 66906030 66906328 -50956299 - AluSx SINE Alu -13 299 1 876 193 63 136 chr9 66906340 66906671 -50955956 - MER51A LTR ERV1 0 634 328 305 213 61 30 chr9 66906895 66907060 -50955567 + L1MEd LINE L1 953 1150 -4969 333 293 82 35 chr9 66907060 66907292 -50955335 + L1M4 LINE L1 5060 5302 -844 714 201 122 22 chr9 66907318 66907547 -50955080 - LTR52 LTR ERVL -169 252 1 412 223 41 41 chr9 66908414 66908535 -50954092 + MLT1H LTR MaLR 377 497 -52 2299 115 0 3 chr9 66908557 66908871 -50953756 - AluSq SINE Alu 0 313 1 737 99 0 0 chr9 66908911 66909002 -50953625 + AluSg/x SINE Alu 188 278 -34 521 95 24 0 chr9 66909007 66909091 -50953536 + (GGGGA)n Simple_repeat Simple_repeat 5 90 0 2410 87 3 0 chr9 66910110 66910419 -50952208 - AluSg SINE Alu 0 310 1 3294 259 43 9 chr9 66911690 66912647 -50949980 - L1MEc LINE L1 -5215 1181 193 1438 192 78 97 chr9 66912647 66913127 -50949500 - MER66A LTR ERV1 0 504 97 307 202 219 17 chr9 66913193 66913312 -50949315 - L1MEc LINE L1 -6208 188 46 22 56 0 0 chr9 66913750 66913786 -50948841 + AT_rich Low_complexity Low_complexity 1 36 0 633 206 188 6 chr9 66914293 66914453 -50948174 - MER5A DNA MER1_type 0 189 1 2095 118 27 0 chr9 66914735 66915032 -50947595 + AluSx SINE Alu 4 308 -4 197 188 0 0 chr9 66915411 66915443 -50947184 + MIR SINE MIR 202 233 -29 382 203 17 124 chr9 66915877 66915949 -50946678 - LTR48 LTR ERV1 -28 759 681 2369 103 3 0 chr9 66915949 66916259 -50946368 + AluSx SINE Alu 1 311 -1 382 203 17 124 chr9 66916259 66916320 -50946307 - LTR48 LTR ERV1 -106 681 647 2268 120 0 0 chr9 66916320 66916628 -50945999 + AluSq SINE Alu 1 308 -5 382 203 17 124 chr9 66916628 66916670 -50945957 - LTR48 LTR ERV1 -140 647 602 * 2373 128 71 10 chr9 66916655 66917061 -50945566 - LTR49 LTR ERV1 -164 431 1 1058 115 19 96 chr9 66917354 66917563 -50945064 - LTR29 LTR ERV1 0 622 430 3010 143 64 2 chr9 66917626 66918107 -50944520 + MER41E LTR ERV1 2 512 0 1234 116 24 2 chr9 66918107 66918352 -50944275 - LTR29 LTR ERV1 -174 448 158 660 102 0 0 chr9 66918715 66918813 -50943814 + (TTCC)n Simple_repeat Simple_repeat 3 100 0 1077 231 111 56 chr9 66918857 66919442 -50943185 - L1MC5 LINE L1 -45 7916 7300 3191 131 20 2 chr9 66919812 66920271 -50942356 - LTR24 LTR ERV1 0 467 1 28 0 0 0 chr9 66920336 66920364 -50942263 + AT_rich Low_complexity Low_complexity 1 28 0 1852 116 0 15 chr9 66921324 66921583 -50941044 + AluSq SINE Alu 45 299 -14 321 265 41 20 chr9 66921646 66921744 -50940883 + L1MEd LINE L1 993 1092 -5027 1356 91 17 109 chr9 66921762 66921992 -50940635 + AluSc SINE Alu 91 299 -10 444 280 42 111 chr9 66921993 66922037 -50940590 + HAL1 LINE L1 1238 1283 -1224 1571 103 222 4 chr9 66922037 66922280 -50940347 + AluSg1 SINE Alu 1 296 -13 444 280 42 111 chr9 66922280 66922362 -50940265 + HAL1 LINE L1 1283 1369 -1138 2408 76 3 7 chr9 66922362 66922666 -50939961 + AluY SINE Alu 1 303 -8 444 280 42 111 chr9 66922666 66922917 -50939710 + HAL1 LINE L1 1369 1590 -917 1058 169 25 40 chr9 66922917 66923118 -50939509 + AluJo SINE Alu 1 198 -114 260 134 0 0 chr9 66923119 66923166 -50939461 + Alu SINE Alu 240 280 -22 411 223 41 41 chr9 66923410 66923531 -50939096 + MLT1H LTR MaLR 377 497 -52 2318 115 0 3 chr9 66923553 66923867 -50938760 - AluSq SINE Alu 0 313 1 692 118 39 0 chr9 66923907 66924009 -50938618 + AluSg/x SINE Alu 188 293 -19 509 77 26 0 chr9 66924009 66924087 -50938540 + (GGGGA)n Simple_repeat Simple_repeat 1 80 0 2427 87 3 0 chr9 66925106 66925415 -50937212 - AluSg SINE Alu 0 310 1 3259 259 43 9 chr9 66926686 66927643 -50934984 - L1MEc LINE L1 -5215 1181 193 1516 186 79 95 chr9 66927643 66928116 -50934511 - MER66A LTR ERV1 0 504 97 297 202 219 17 chr9 66928188 66928307 -50934320 - L1MEc LINE L1 -6208 188 46 30 27 0 0 chr9 66928745 66928782 -50933845 + AT_rich Low_complexity Low_complexity 1 37 0 577 210 185 6 chr9 66929290 66929447 -50933180 - MER5A DNA MER1_type 0 189 5 2131 114 27 0 chr9 66929732 66930029 -50932598 + AluSx SINE Alu 4 308 -4 186 188 0 0 chr9 66930409 66930441 -50932186 + MIR SINE MIR 202 233 -29 370 203 17 124 chr9 66930875 66930947 -50931680 - LTR48 LTR ERV1 -28 759 681 2416 100 3 0 chr9 66930947 66931258 -50931369 + AluSx SINE Alu 1 312 0 370 203 17 124 chr9 66931258 66931319 -50931308 - LTR48 LTR ERV1 -106 681 647 2282 120 0 0 chr9 66931319 66931627 -50931000 + AluSq SINE Alu 1 308 -5 370 203 17 124 chr9 66931627 66931669 -50930958 - LTR48 LTR ERV1 -140 647 602 * 2360 131 71 10 chr9 66931654 66932060 -50930567 - LTR49 LTR ERV1 -164 431 1 1101 111 19 91 chr9 66932353 66932561 -50930066 - LTR29 LTR ERV1 0 622 430 2870 140 9 2 chr9 66932624 66933059 -50929568 + MER41E LTR ERV1 2 439 -73 1228 116 24 2 chr9 66933105 66933350 -50929277 - LTR29 LTR ERV1 -174 448 158 552 116 0 0 chr9 66933713 66933799 -50928828 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 1033 231 111 56 chr9 66933843 66934428 -50928199 - L1MC5 LINE L1 -45 7916 7300 3032 133 20 2 chr9 66934798 66935257 -50927370 - LTR24 LTR ERV1 0 467 1 28 0 0 0 chr9 66935322 66935350 -50927277 + AT_rich Low_complexity Low_complexity 1 28 0 1965 107 0 15 chr9 66936307 66936579 -50926048 + AluSx SINE Alu 45 312 0 32 0 0 0 chr9 66937349 66937381 -50925246 + AT_rich Low_complexity Low_complexity 1 32 0 2642 50 0 0 chr9 66937386 66937685 -50924942 + AluY SINE Alu 1 299 -12 1744 159 36 4 chr9 66938909 66939186 -50923441 + AluSx SINE Alu 1 286 -26 25 0 0 0 chr9 66939188 66939213 -50923414 + AT_rich Low_complexity Low_complexity 1 25 0 2488 57 0 0 chr9 66939271 66939569 -50923058 + AluY SINE Alu 1 298 -13 438 263 192 45 chr9 66939977 66940289 -50922338 + HAL1 LINE L1 1409 1766 -741 2258 122 0 3 chr9 66940420 66940731 -50921896 + AluSg SINE Alu 1 310 0 2267 107 3 0 chr9 66940787 66941086 -50921541 + AluSq SINE Alu 1 300 -13 373 341 51 29 chr9 66941275 66941650 -50920977 - L2 LINE L2 -56 3257 2875 246 254 65 94 chr9 66941677 66941815 -50920812 + L1ME LINE L1 4883 5016 -1130 387 250 0 0 chr9 66941817 66941893 -50920734 + HAL1 LINE L1 1 76 -2431 1882 196 75 27 chr9 66941895 66942333 -50920294 - LTR2B LTR ERV1 0 490 32 599 261 102 25 chr9 66942351 66942596 -50920031 + HAL1 LINE L1 79 342 -2165 2377 68 0 7 chr9 66942609 66942901 -50919726 - AluY SINE Alu -20 291 2 2329 112 3 9 chr9 66942944 66943282 -50919345 - MER9 LTR ERVK 0 511 176 2324 79 0 47 chr9 66943282 66943599 -50919028 + AluY SINE Alu 1 302 -9 327 271 57 51 chr9 66943668 66943813 -50918814 + HAL1 LINE L1 821 969 -1538 2303 102 0 29 chr9 66943813 66944127 -50918500 + AluSg SINE Alu 1 305 -5 327 271 57 51 chr9 66944127 66944158 -50918469 + HAL1 LINE L1 969 998 -1509 1320 238 85 15 chr9 66944236 66944865 -50917762 + L1ME LINE L1 5129 5823 -347 1017 163 12 0 chr9 66944870 66945030 -50917597 - MSTD LTR MaLR 0 396 235 440 238 16 0 chr9 66945076 66945198 -50917429 - L1M4 LINE L1 -843 5303 5180 7509 36 1 0 chr9 66945199 66946874 -50915753 - L1PA5 LINE L1 -4 6150 4467 6156 37 0 0 chr9 66946874 66947601 -50915026 + L1PA5 LINE L1 3727 4453 -1693 2303 253 82 13 chr9 66947773 66948598 -50914029 + HAL1 LINE L1 1190 2071 -436 461 289 75 12 chr9 66948605 66948778 -50913849 + MIR SINE MIR 5 188 -74 1207 184 0 13 chr9 66948831 66949059 -50913568 - AluJo SINE Alu -2 310 86 422 298 74 37 chr9 66949103 66949455 -50913172 + HAL1 LINE L1 2089 2453 -54 1477 253 42 0 chr9 66949510 66949917 -50912710 + L1M4 LINE L1 3510 3933 -2213 2498 205 23 53 chr9 66949934 66950385 -50912242 - L1MA9 LINE L1 -48 6264 5801 1697 169 0 49 chr9 66950385 66950710 -50911917 - AluJo SINE Alu -3 309 1 2480 81 0 3 chr9 66950719 66951027 -50911600 - AluY SINE Alu -4 307 1 2498 205 23 53 chr9 66951027 66951227 -50911400 - L1MA9 LINE L1 -519 5793 5623 689 234 73 44 chr9 66951230 66951478 -50911149 + L1M4 LINE L1 3919 4173 -1973 436 197 136 76 chr9 66951508 66951640 -50910987 + MER82 DNA MER2_type 23 162 -491 1173 152 15 20 chr9 66952098 66952302 -50910325 + MER82 DNA MER2_type 200 402 -251 372 267 29 0 chr9 66953378 66953483 -50909144 - MLT1H LTR MaLR -362 187 80 2455 49 0 61 chr9 66953526 66953854 -50908773 - AluY SINE Alu -3 308 1 226 164 119 45 chr9 66954556 66954623 -50908004 - LTR9 LTR ERV1 -83 529 458 1904 104 85 0 chr9 66954652 66954922 -50907705 - AluY SINE Alu -18 293 1 254 322 101 49 chr9 66955252 66955699 -50906928 - L1MC/D LINE L1 -1909 5899 5430 191 190 38 13 chr9 66955884 66955963 -50906664 + (TA)n Simple_repeat Simple_repeat 2 82 0 711 99 0 0 chr9 66956339 66956440 -50906187 - AluSc SINE Alu -9 300 200 1997 179 91 35 chr9 66956443 66956907 -50905720 + LTR2B LTR ERV1 1 490 0 1663 81 0 0 chr9 66956907 66957104 -50905523 - AluSc SINE Alu -102 207 11 562 124 7 139 chr9 66958294 66958387 -50904240 + MLT1B LTR MaLR 7 78 -312 2244 78 7 10 chr9 66958387 66958683 -50903944 + AluY SINE Alu 1 295 -16 562 124 7 139 chr9 66958683 66958726 -50903901 + MLT1B LTR MaLR 78 125 -265 823 188 0 0 chr9 66958727 66958860 -50903767 + AluSq/x SINE Alu 1 133 -179 2448 97 0 0 chr9 66958879 66959187 -50903440 + AluY SINE Alu 1 308 -3 1584 158 22 4 chr9 66959210 66959483 -50903144 + MLT1B LTR MaLR 112 389 -1 2011 93 61 7 chr9 66959689 66959967 -50902660 + AluSx SINE Alu 1 293 -19 258 288 100 52 chr9 66959976 66960383 -50902244 + L1ME LINE L1 5357 5781 -340 234 281 175 36 chr9 66961398 66961729 -50900898 + MLT1K LTR MaLR 183 559 -29 537 233 27 95 chr9 66962587 66962687 -50899940 + MER20B DNA MER1_type 540 645 -138 2198 122 0 28 chr9 66962687 66963006 -50899621 - AluSx SINE Alu -2 310 1 537 233 27 95 chr9 66963006 66963167 -50899460 + MER20B DNA MER1_type 645 783 0 2238 116 0 3 chr9 66963413 66963716 -50898911 + AluSx SINE Alu 1 302 -10 285 298 118 28 chr9 66963847 66964025 -50898602 + L2 LINE L2 3111 3304 -9 1039 119 0 0 chr9 66964038 66964172 -50898455 + AluSq/x SINE Alu 2 135 -178 1817 134 3 25 chr9 66964172 66964456 -50898171 + AluSx SINE Alu 1 278 -34 2357 175 22 0 chr9 66964559 66964959 -50897668 + MLT2C2 LTR ERVL 1 409 -55 272 120 20 0 chr9 66964960 66965010 -50897617 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 368 120 0 0 chr9 66965041 66965091 -50897536 - MLT2C2 LTR ERVL -211 253 204 312 230 46 11 chr9 66965093 66965180 -50897447 - L1MC4 LINE L1 -1339 6703 6614 228 182 23 0 chr9 66965259 66965303 -50897324 + MLT2C2 LTR ERVL 476 520 0 286 199 118 23 chr9 66965393 66965519 -50897108 - MIR SINE MIR -67 141 7 197 300 25 0 chr9 66965744 66965824 -50896803 - MIR SINE MIR -36 226 145 240 209 0 0 chr9 66966688 66966779 -50895848 + GA-rich Low_complexity Low_complexity 2 92 0 276 291 20 26 chr9 66966799 66966950 -50895677 - L1M LINE L1 -748 5414 5265 255 292 0 0 chr9 66967157 66967246 -50895381 - L1 LINE L1 -1112 5034 4946 24 67 0 0 chr9 66967407 66967452 -50895175 + AT_rich Low_complexity Low_complexity 1 45 0 829 280 0 0 chr9 66967662 66967880 -50894747 + MIR SINE MIR 14 231 -31 2369 184 24 5 chr9 66969166 66969584 -50893043 + MSTB LTR MaLR 1 426 0 1363 238 47 79 chr9 66969619 66970085 -50892542 - MLT1F LTR MaLR -89 453 3 2136 103 10 3 chr9 66970730 66971041 -50891586 + AluSq SINE Alu 1 313 0 21 0 0 0 chr9 66971318 66971339 -50891288 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 66972707 66972729 -50889898 + AT_rich Low_complexity Low_complexity 1 22 0 375 228 149 26 chr9 66972831 66972945 -50889682 - L2 LINE L2 -1 3312 3185 442 283 27 53 chr9 66973022 66973209 -50889418 - HsTC2 DNA Tc2 -1048 850 669 2249 87 0 3 chr9 66973269 66973569 -50889058 + AluSg SINE Alu 1 299 -11 1300 251 98 27 chr9 66975440 66975815 -50886812 + Charlie4a DNA MER1_type 1 348 -1613 342 0 0 0 chr9 66975815 66975853 -50886774 + (TG)n Simple_repeat Simple_repeat 1 38 0 2350 62 0 29 chr9 66975854 66976161 -50886466 - AluY SINE Alu -13 298 1 1300 251 98 27 chr9 66976161 66976222 -50886405 + Charlie4a DNA MER1_type 347 470 -38 274 300 186 13 chr9 66976294 66976531 -50886096 + LTR16C LTR ERVL 179 456 -35 2107 114 7 0 chr9 66977083 66977390 -50885237 + AluSx SINE Alu 1 309 -3 1763 76 0 0 chr9 66977504 66977728 -50884899 - AluY SINE Alu -87 224 1 511 93 53 0 chr9 66977935 66978010 -50884617 - AluY SINE Alu -230 80 2 477 241 140 12 chr9 66978291 66978532 -50884095 - MLT1H1 LTR MaLR -20 510 231 1498 273 29 8 chr9 66978533 66979020 -50883607 + L1MD2 LINE L1 4450 4946 -1200 353 125 54 27 chr9 66979020 66979132 -50883495 + GA-rich Low_complexity Low_complexity 1 115 0 4404 200 38 18 chr9 66979146 66980382 -50882245 + L1MD2 LINE L1 4942 6209 -150 1352 245 70 50 chr9 66980554 66980637 -50881990 + MER21B LTR ERV1 12 92 -771 1939 127 10 7 chr9 66980637 66980937 -50881690 - AluJb SINE Alu -11 301 1 1352 245 70 50 chr9 66980937 66981269 -50881358 + MER21B LTR ERV1 92 435 -428 6823 57 9 33 chr9 66981288 66982260 -50880367 - SVA Other Other -5 1381 433 6015 63 21 17 chr9 66982324 66983187 -50879440 - SVA Other Other -520 866 1 274 0 130 0 chr9 66983187 66983233 -50879394 + GA-rich Low_complexity Low_complexity 5 56 0 1409 195 104 19 chr9 66983237 66983544 -50879083 + MER21B LTR ERV1 424 756 -107 702 278 11 0 chr9 66983662 66983838 -50878789 - MER5B DNA MER1_type 0 178 1 905 278 75 72 chr9 66984469 66984638 -50877989 + HAL1b LINE L1 83 250 -1098 1821 164 0 7 chr9 66984638 66984936 -50877691 + AluJb SINE Alu 2 297 -15 905 278 75 72 chr9 66984936 66985378 -50877249 + HAL1b LINE L1 250 696 -652 692 274 231 31 chr9 66985470 66986192 -50876435 - L2 LINE L2 -1290 2024 1076 1650 162 11 0 chr9 66986201 66986473 -50876154 + MLT1A2-int LTR MaLR 1461 1735 0 1614 185 34 57 chr9 66986473 66986856 -50875771 + MLT1A2 LTR MaLR 1 374 0 730 236 200 26 chr9 66987033 66987448 -50875179 - L2 LINE L2 -2509 805 319 781 186 87 0 chr9 66987738 66987899 -50874728 + FRAM SINE Alu 1 168 -8 1920 158 137 8 chr9 66987902 66988281 -50874346 + MSTA LTR MaLR 1 428 0 9125 139 16 54 chr9 66988283 66989923 -50872704 + MSTA-int LTR MaLR 3 1580 0 1903 149 171 11 chr9 66989923 66990105 -50872522 + MSTA LTR MaLR 1 153 -275 195 42 0 0 chr9 66990105 66990129 -50872498 + (TC)n Simple_repeat Simple_repeat 1 24 0 1903 149 171 11 chr9 66990129 66990315 -50872312 + MSTA LTR MaLR 153 428 0 253 184 41 0 chr9 66990645 66990694 -50871933 - MLT1B LTR MaLR -6 384 334 459 181 0 0 chr9 66990702 66990774 -50871853 + MER47A DNA MER2_type 1 72 -294 3285 138 12 14 chr9 66990867 66991380 -50871247 + MER41E LTR ERV1 1 512 0 1766 144 17 30 chr9 66991381 66991596 -50871031 + MER47A DNA MER2_type 72 283 -2040 2168 98 3 3 chr9 66991596 66991891 -50870736 - AluSx SINE Alu -17 295 1 1766 144 17 30 chr9 66991891 66991974 -50870653 + MER47A DNA MER2_type 283 366 0 2055 150 16 3 chr9 66991974 66992294 -50870333 - MLT1B LTR MaLR -66 324 1 283 254 36 73 chr9 66992641 66992751 -50869876 - MER112 DNA MER1_type -3 257 152 812 153 0 0 chr9 66992803 66992921 -50869706 + AluJb SINE Alu 1 118 -194 1684 158 6 35 chr9 66993048 66993359 -50869268 + AluJb SINE Alu 1 302 -10 1008 146 0 0 chr9 66993600 66993758 -50868869 + AluSg/x SINE Alu 139 296 -16 200 273 182 23 chr9 66993768 66993856 -50868771 - MIR SINE MIR -75 187 86 2150 84 0 72 chr9 66994679 66995012 -50867615 - AluSq SINE Alu -4 309 1 180 0 0 0 chr9 66995708 66995728 -50866899 + (A)n Simple_repeat Simple_repeat 1 20 0 2310 153 92 5 chr9 66996202 66996628 -50865999 - L1MC1 LINE L1 -2 6331 5869 927 154 35 6 chr9 66996677 66996846 -50865781 - MER45A DNA AcHobo 0 178 5 2444 68 0 0 chr9 66996863 66997174 -50865453 - AluY SINE Alu 0 311 1 1862 182 41 3 chr9 66997972 66998340 -50864287 - MLT1B LTR MaLR -1 389 8 198 0 0 0 chr9 66998573 66998595 -50864032 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 2178 83 7 0 chr9 66998597 66998887 -50863740 - AluY SINE Alu -19 292 1 431 314 69 13 chr9 66999043 66999202 -50863425 + MIR SINE MIR 39 206 -56 2086 118 0 0 chr9 66999372 66999669 -50862958 + AluSp SINE Alu 1 297 -16 2342 162 67 2 chr9 66999718 67000151 -50862476 - LOR1b LTR ERV1 0 461 1 279 0 0 0 chr9 67000191 67000222 -50862405 + (TC)n Simple_repeat Simple_repeat 2 32 0 1718 154 0 11 chr9 67000222 67000502 -50862125 - AluJb SINE Alu -25 287 11 2023 65 0 29 chr9 67001069 67001346 -50861281 + AluSc SINE Alu 3 271 -38 291 71 0 0 chr9 67001356 67001398 -50861229 + (GGGGA)n Simple_repeat Simple_repeat 4 45 0 481 293 51 24 chr9 67001410 67001663 -50860964 - HAL1 LINE L1 -794 1713 1454 209 162 0 0 chr9 67001880 67001917 -50860710 + G-rich Low_complexity Low_complexity 3 39 0 1005 166 0 17 chr9 67001923 67002104 -50860523 + FRAM SINE Alu 1 173 -3 202 316 139 0 chr9 67002420 67002499 -50860128 + MIR SINE MIR 80 169 -93 482 265 215 15 chr9 67002903 67002971 -50859656 - MLT1G LTR MaLR -115 475 422 2418 55 0 16 chr9 67002971 67003279 -50859348 + AluY SINE Alu 1 303 -8 482 265 215 15 chr9 67003279 67003601 -50859026 - MLT1G LTR MaLR -168 422 1 2143 105 0 3 chr9 67003645 67003939 -50858688 - AluSc SINE Alu -13 296 4 324 273 58 36 chr9 67003946 67004085 -50858542 - L1 LINE L1 -1926 4220 4079 1828 199 48 97 chr9 67004151 67004395 -50858232 + MER89 LTR ERV1 1 255 -304 3012 177 19 33 chr9 67004395 67004585 -50858042 + L1MA7 LINE L1 5619 5810 -481 2418 57 0 3 chr9 67004585 67004882 -50857745 - AluY SINE Alu -15 296 1 3012 177 19 33 chr9 67004882 67005362 -50857265 + L1MA7 LINE L1 5810 6280 -11 1828 199 48 97 chr9 67005362 67005705 -50856922 + MER89 LTR ERV1 255 559 0 1342 212 13 10 chr9 67005907 67006214 -50856413 - AluJb SINE Alu -2 310 3 2686 134 40 7 chr9 67006532 67006978 -50855649 + LOR1b LTR ERV1 1 461 0 1070 208 86 7 chr9 67007174 67007443 -50855184 - MLT1C LTR MaLR -172 295 6 2446 46 0 3 chr9 67007477 67007783 -50854844 - AluY SINE Alu -6 305 1 1986 141 0 7 chr9 67007783 67008089 -50854538 - AluJb SINE Alu -8 304 1 479 179 13 0 chr9 67008120 67008198 -50854429 - MER94 DNA DNA -49 85 7 319 281 83 0 chr9 67008250 67008371 -50854256 + MLT1I LTR MaLR 72 202 -207 275 310 10 0 chr9 67008371 67008471 -50854156 + L1M4 LINE L1 3745 3845 -2301 1750 129 93 7 chr9 67008482 67008762 -50853865 + AluSx SINE Alu 1 304 -8 2357 70 0 3 chr9 67009173 67009475 -50853152 - AluY SINE Alu -10 301 1 1589 183 21 3 chr9 67009574 67009859 -50852768 + AluJo SINE Alu 2 291 -21 250 218 0 18 chr9 67009967 67010022 -50852605 + L1ME LINE L1 5530 5583 -538 247 158 61 0 chr9 67010077 67010159 -50852468 + (TA)n Simple_repeat Simple_repeat 2 88 0 628 257 60 70 chr9 67010272 67010642 -50851985 + LTR53 LTR ERVL 6 371 -148 468 250 55 43 chr9 67010712 67010876 -50851751 + LTR53 LTR ERVL 344 509 -10 1887 79 59 59 chr9 67011021 67011324 -50851303 - AluSg1 SINE Alu -6 303 1 208 341 112 28 chr9 67011362 67011541 -50851086 + L2 LINE L2 3119 3312 -1 272 270 0 14 chr9 67011957 67012031 -50850596 + Charlie4 DNA MER1_type 1883 1955 -6 1639 208 59 85 chr9 67012561 67012738 -50849889 - MER34B LTR ERV1 -2 563 383 2186 96 0 0 chr9 67012738 67013029 -50849598 - AluSc SINE Alu -18 291 1 1639 208 59 85 chr9 67013029 67013430 -50849197 - MER34B LTR ERV1 -182 383 2 269 244 126 25 chr9 67013430 67013549 -50849078 + L2 LINE L2 1826 1956 -1358 351 79 95 16 chr9 67013710 67013773 -50848854 + LTR52 LTR ERVL 31 98 -323 331 179 139 30 chr9 67014237 67014346 -50848281 + MER34 LTR ERV1 434 542 0 * 1091 174 85 36 chr9 67014346 67014615 -50848012 + LTR52 LTR ERVL 81 363 -58 230 259 0 0 chr9 67014675 67014729 -50847898 + L2 LINE L2 2155 2208 -1106 1889 126 7 3 chr9 67014865 67015158 -50847469 - AluSx SINE Alu -1 311 18 428 295 205 8 chr9 67015167 67015557 -50847070 + L2 LINE L2 2200 2666 -648 2130 91 3 0 chr9 67016275 67016572 -50846055 + AluY SINE Alu 14 311 0 32 57 0 0 chr9 67016702 67016755 -50845872 + AT_rich Low_complexity Low_complexity 1 53 0 675 299 95 58 chr9 67016901 67017378 -50845249 + L1ME4a LINE L1 5382 5908 -213 1875 119 6 50 chr9 67017573 67017891 -50844736 + AluSx SINE Alu 1 304 -8 696 206 0 8 chr9 67018050 67018176 -50844451 + FLAM_A SINE Alu 1 125 -8 219 88 0 0 chr9 67019320 67019354 -50843273 + (CA)n Simple_repeat Simple_repeat 2 35 0 334 216 136 56 chr9 67019392 67019517 -50843110 + L1ME4a LINE L1 5984 6118 -3 2178 96 3 0 chr9 67019539 67019832 -50842795 + AluSp SINE Alu 6 299 -14 2380 73 0 0 chr9 67019833 67020134 -50842493 + AluY SINE Alu 1 301 -10 30 27 0 0 chr9 67020336 67020373 -50842254 + AT_rich Low_complexity Low_complexity 1 37 0 314 280 188 88 chr9 67021011 67021124 -50841503 + HAL1 LINE L1 10 110 -2397 180 77 0 0 chr9 67021124 67021150 -50841477 + (CAA)n Simple_repeat Simple_repeat 2 27 0 314 280 188 88 chr9 67021150 67021608 -50841019 + HAL1 LINE L1 110 648 -1859 2070 121 0 34 chr9 67021608 67021930 -50840697 - AluSx SINE Alu -1 311 1 314 280 188 88 chr9 67021930 67021968 -50840659 + HAL1 LINE L1 648 681 -1826 1521 99 29 16 chr9 67022078 67022320 -50840307 - AluSg SINE Alu -26 284 40 1522 164 7 11 chr9 67023176 67023450 -50839177 + AluJo SINE Alu 38 310 -2 1177 236 157 15 chr9 67023905 67024363 -50838264 + MER34B LTR ERV1 43 565 0 1805 154 0 3 chr9 67024597 67024883 -50837744 + AluJb SINE Alu 1 285 -27 2240 104 0 0 chr9 67024908 67025215 -50837412 + AluSg SINE Alu 1 307 -3 598 208 76 21 chr9 67025286 67025430 -50837197 + MLT1C LTR MaLR 5 156 -349 2345 63 0 35 chr9 67025450 67025767 -50836860 - AluY SINE Alu -5 306 1 2095 114 0 0 chr9 67025795 67026084 -50836543 + AluSx SINE Alu 1 289 -23 219 88 0 0 chr9 67026088 67026122 -50836505 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 849 119 0 0 chr9 67026133 67026251 -50836376 + FLAM_C SINE Alu 1 118 -25 741 214 107 19 chr9 67026292 67026498 -50836129 + MLT1C LTR MaLR 192 415 -52 1765 98 74 0 chr9 67026535 67026791 -50835836 - AluSx SINE Alu -23 289 15 1955 132 3 0 chr9 67027044 67027332 -50835295 - AluJb SINE Alu -18 294 6 443 135 81 0 chr9 67027444 67027518 -50835109 + FRAM SINE Alu 76 155 -21 2255 57 0 7 chr9 67027532 67027862 -50834765 + AluY SINE Alu 3 330 0 1635 126 0 0 chr9 67027864 67028135 -50834492 + AluSg SINE Alu 46 316 0 810 160 0 8 chr9 67028136 67028254 -50834373 + AluJb SINE Alu 2 120 -192 342 0 0 0 chr9 67028254 67028292 -50834335 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 810 160 0 8 chr9 67028292 67028304 -50834323 + AluJb SINE Alu 120 131 -181 382 218 119 10 chr9 67028337 67028438 -50834189 + MIR SINE MIR 56 167 -95 2381 83 0 6 chr9 67029708 67030022 -50832605 + AluSx SINE Alu 1 312 0 380 310 127 41 chr9 67030587 67031100 -50831527 + MLT1G1 LTR MaLR 16 572 -23 4387 149 19 19 chr9 67031295 67031699 -50830928 + LTR62 LTR ERVK 1 407 -312 1978 148 0 0 chr9 67031699 67031997 -50830630 - AluSx SINE Alu -14 298 1 4387 149 19 19 chr9 67031997 67032309 -50830318 + LTR62 LTR ERVK 406 717 -2 2221 76 0 54 chr9 67032411 67032593 -50830034 - AluSp SINE Alu -13 300 141 2223 65 0 36 chr9 67032593 67032902 -50829725 - AluY SINE Alu -1 310 13 2221 76 0 54 chr9 67032902 67033036 -50829591 - AluSp SINE Alu -172 141 1 291 202 48 138 chr9 67033803 67033991 -50828636 + HAL1 LINE L1 775 945 -1562 1622 109 0 0 chr9 67034009 67034239 -50828388 + AluSg SINE Alu 1 230 -80 489 265 73 45 chr9 67034245 67034600 -50828027 + HAL1 LINE L1 902 1266 -1241 1024 82 0 0 chr9 67034603 67034737 -50827890 + AluSg SINE Alu 1 134 -176 248 67 0 0 chr9 67034816 67034846 -50827781 - LTR6A LTR ERV1 -462 102 73 201 196 0 0 chr9 67035763 67035809 -50826818 + GA-rich Low_complexity Low_complexity 3 48 0 1985 126 7 7 chr9 67035851 67036160 -50826467 + AluSx SINE Alu 3 311 -1 23 0 0 0 chr9 67036166 67036189 -50826438 + AT_rich Low_complexity Low_complexity 1 23 0 642 201 8 15 chr9 67036246 67036380 -50826247 + FLAM_C SINE Alu 1 133 0 314 252 84 17 chr9 67036732 67036851 -50825776 + L1MC/D LINE L1 5646 5772 -2036 1828 228 49 21 chr9 67036864 67037330 -50825297 + MER21B LTR ERV1 330 808 -55 4634 199 50 20 chr9 67037436 67037800 -50824827 + MER21-int LTR ERV1 3084 3436 -3322 2272 94 0 0 chr9 67037800 67038099 -50824528 + AluSc SINE Alu 1 299 -10 4634 199 50 20 chr9 67038099 67038731 -50823896 + MER21-int LTR ERV1 3436 4110 -2648 999 134 102 38 chr9 67038735 67038921 -50823706 + AluJb SINE Alu 1 198 -114 506 219 12 24 chr9 67038921 67039090 -50823537 + GA-rich Low_complexity Low_complexity 2 168 0 393 254 52 8 chr9 67039098 67039232 -50823395 + MER21-int LTR ERV1 1218 1357 -2834 2016 106 3 0 chr9 67039270 67039553 -50823074 + AluSp SINE Alu 1 284 -29 2562 147 97 48 chr9 67039607 67040189 -50822438 - MER4B LTR ERV1 -9 770 1 1895 155 65 49 chr9 67040189 67040229 -50822398 - MSTD LTR MaLR -27 369 331 2122 95 7 3 chr9 67040229 67040524 -50822103 + AluSq SINE Alu 13 308 -5 1895 155 65 49 chr9 67040524 67040846 -50821781 - MSTD LTR MaLR -65 331 1 2178 129 132 5 chr9 67040891 67041271 -50821356 + MSTA LTR MaLR 1 428 0 277 350 42 0 chr9 67041430 67041550 -50821077 - L2 LINE L2 -191 3081 2957 2350 65 7 0 chr9 67041571 67041877 -50820750 - AluSp SINE Alu -5 308 1 2111 107 7 0 chr9 67041969 67042269 -50820358 + AluSx SINE Alu 1 302 -10 1233 153 109 109 chr9 67042606 67042737 -50819890 - LTR7 LTR ERV1 0 450 320 2215 82 0 0 chr9 67042737 67043030 -50819597 - AluY SINE Alu -14 297 5 1233 153 109 109 chr9 67043030 67043348 -50819279 - LTR7 LTR ERV1 -129 321 1 22 70 0 0 chr9 67043411 67043454 -50819173 + AT_rich Low_complexity Low_complexity 1 43 0 2252 81 0 3 chr9 67043517 67043814 -50818813 - AluY SINE Alu -15 296 1 1160 97 14 2 chr9 67043868 67044089 -50818538 + AluSx SINE Alu 38 296 -16 1709 130 0 0 chr9 67044266 67044519 -50818108 + AluSx SINE Alu 31 283 -29 1042 137 16 22 chr9 67044522 67044677 -50817950 + AluSq SINE Alu 127 281 -32 216 0 0 0 chr9 67044677 67044701 -50817926 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 1440 174 3 69 chr9 67044703 67045037 -50817590 + AluJb SINE Alu 1 312 0 1042 137 16 22 chr9 67045037 67045060 -50817567 + AluSq SINE Alu 282 307 -6 1133 169 29 5 chr9 67045281 67045488 -50817139 - AluJo SINE Alu -92 220 9 225 65 0 0 chr9 67045651 67045682 -50816945 + (TTCC)n Simple_repeat Simple_repeat 1 31 0 2165 73 4 4 chr9 67045682 67045957 -50816670 - AluSc SINE Alu -23 286 12 2836 217 142 50 chr9 67046417 67046488 -50816139 + HAL1 LINE L1 675 738 -1769 2599 42 0 0 chr9 67046488 67046799 -50815828 + AluY SINE Alu 1 311 0 2836 217 142 50 chr9 67046799 67047856 -50814771 + HAL1 LINE L1 738 1907 -600 413 102 17 0 chr9 67048382 67048441 -50814186 - MLT1B LTR MaLR -330 60 1 970 98 0 0 chr9 67048455 67048588 -50814039 - AluSc SINE Alu -14 295 163 457 130 14 0 chr9 67048600 67048669 -50813958 + AluSc SINE Alu 45 114 -195 594 95 0 0 chr9 67048775 67048849 -50813778 + AluSp SINE Alu 106 179 -134 246 139 0 0 chr9 67048896 67048932 -50813695 + Alu SINE Alu 1 36 -97 * 1441 80 0 5 chr9 67048914 67049102 -50813525 + PABL_A LTR ERV1 298 484 -176 772 150 8 15 chr9 67049102 67049235 -50813392 + FLAM_C SINE Alu 2 133 0 1465 89 0 5 chr9 67049261 67049452 -50813175 + PABL_A LTR ERV1 471 660 0 370 140 0 0 chr9 67049452 67049509 -50813118 + Alu SINE Alu 242 298 -3 441 196 65 0 chr9 67049516 67049608 -50813019 - MLT1E3 LTR MaLR -526 98 1 2040 121 6 22 chr9 67049697 67050012 -50812615 + AluSx SINE Alu 1 310 -2 809 251 173 34 chr9 67050298 67050680 -50811947 + LTR33 LTR ERVL 87 521 0 2347 80 0 0 chr9 67050824 67051123 -50811504 + AluY SINE Alu 2 300 -11 604 225 33 0 chr9 67051313 67051433 -50811194 - MLT1G1 LTR MaLR -15 580 457 333 279 73 15 chr9 67051739 67051875 -50810752 - MLT1G1 LTR MaLR -451 144 1 1857 147 7 3 chr9 67052636 67052936 -50809691 + AluSx SINE Alu 1 301 -11 330 241 207 12 chr9 67054039 67054176 -50808451 + MER5A DNA MER1_type 15 187 -2 2514 134 40 2 chr9 67054213 67054617 -50808010 + LTR62 LTR ERVK 1 419 -300 2350 87 0 0 chr9 67054630 67054941 -50807686 + AluY SINE Alu 1 311 0 2200 93 0 0 chr9 67054967 67055258 -50807369 + AluSx SINE Alu 5 295 -17 538 207 0 9 chr9 67055260 67055371 -50807256 - AluJo/FLAM SINE Alu -179 133 24 1698 144 102 0 chr9 67055395 67055680 -50806947 + LTR62 LTR ERVK 402 715 -4 3220 196 112 23 chr9 67055875 67056610 -50806017 - MER21B LTR ERV1 -63 800 1 2070 95 48 7 chr9 67056717 67057011 -50805616 + AluSg SINE Alu 2 307 -3 2763 166 69 13 chr9 67057012 67057549 -50805078 - MER21B-int LTR ERV1 -64 4127 3561 1152 56 0 7 chr9 67057550 67057694 -50804933 + AluY SINE Alu 1 143 -168 248 30 0 0 chr9 67057694 67057727 -50804900 + Alu SINE Alu 261 293 -7 1138 165 96 0 chr9 67057728 67057946 -50804681 - MER21B-int LTR ERV1 -617 3574 3336 1899 151 0 31 chr9 67057946 67058265 -50804362 + AluSx SINE Alu 1 309 -3 968 196 0 0 chr9 67058280 67058453 -50804174 - AluJ SINE Alu -11 301 129 10355 37 1 0 chr9 67058465 67059696 -50802931 - L1PA4 LINE L1 -3257 2889 1658 20450 35 7 0 chr9 67059697 67062928 -50799699 + L1PA4 LINE L1 2905 6155 0 765 142 8 8 chr9 67062932 67063052 -50799575 - AluJ SINE Alu -191 121 2 7562 210 25 40 chr9 67063054 67063181 -50799446 - MER21B-int LTR ERV1 -861 4972 4845 2030 108 10 17 chr9 67063181 67063477 -50799150 - AluSc SINE Alu -15 294 1 7562 210 25 40 chr9 67063477 67063827 -50798800 - MER21B-int LTR ERV1 -988 4845 4491 2061 118 0 3 chr9 67063827 67064139 -50798488 - AluSc SINE Alu 0 312 2 7562 210 25 40 chr9 67064139 67064395 -50798232 - MER21B-int LTR ERV1 -1342 4491 4233 1913 144 3 7 chr9 67064395 67064701 -50797926 + AluSx SINE Alu 1 305 -7 7562 210 25 40 chr9 67064701 67065678 -50796949 - MER21B-int LTR ERV1 -1600 4233 1697 687 218 7 25 chr9 67065707 67065881 -50796746 - MER21B-int LTR ERV1 -2065 4693 1673 4303 208 34 15 chr9 67065962 67066839 -50795788 - MER21B-int LTR ERV1 -3049 1142 249 2285 87 0 3 chr9 67066839 67067148 -50795479 - AluSg SINE Alu -2 308 1 1111 204 0 0 chr9 67067148 67067334 -50795293 - MER21B-int LTR ERV1 -4004 187 2 2030 222 76 28 chr9 67067357 67067921 -50794706 - MER21B LTR ERV1 -58 805 215 328 56 0 155 chr9 67067953 67067970 -50794657 + MER4A LTR ERV1 1 19 -645 2140 118 0 10 chr9 67067970 67068275 -50794352 - AluSx SINE Alu -10 302 1 328 56 0 155 chr9 67068275 67068328 -50794299 + MER4A LTR ERV1 19 60 -604 2447 65 0 3 chr9 67069080 67069388 -50793239 + AluSq SINE Alu 1 307 -6 609 231 16 0 chr9 67069600 67069721 -50792906 + MLT1G1 LTR MaLR 1 123 -472 238 301 0 39 chr9 67069721 67069783 -50792844 - MER81 DNA DNA -13 101 43 2014 118 0 52 chr9 67069783 67069919 -50792708 + AluSq SINE Alu 1 142 -171 2168 79 45 0 chr9 67069919 67070209 -50792418 + AluY SINE Alu 1 303 -8 2014 118 0 52 chr9 67070209 67070402 -50792225 + AluSq SINE Alu 142 313 0 238 301 0 39 chr9 67070402 67070442 -50792185 - MER81 DNA DNA -71 43 3 261 259 37 37 chr9 67070448 67070556 -50792071 + MLT1G1 LTR MaLR 81 188 -402 1771 226 22 52 chr9 67070561 67070601 -50792026 + MER74B LTR ERVL 56 96 -526 528 191 162 0 chr9 67070601 67070706 -50791921 - FLAM_A SINE Alu -10 123 2 1771 226 22 52 chr9 67070706 67071129 -50791498 + MER74B LTR ERVL 96 505 -117 885 172 0 0 chr9 67072014 67072159 -50790468 - AluSg/x SINE Alu -33 277 133 2006 113 19 41 chr9 67072159 67072478 -50790149 - AluSx SINE Alu 0 312 1 208 154 0 26 chr9 67073342 67073381 -50789246 + T-rich Low_complexity Low_complexity 1 38 0 2275 92 3 0 chr9 67073419 67073722 -50788905 + AluSg SINE Alu 1 304 -6 1754 101 11 19 chr9 67073958 67074226 -50788401 - AluSg SINE Alu -5 305 40 1020 223 64 86 chr9 67074347 67074867 -50787760 + MER34B LTR ERV1 18 565 0 2014 140 7 0 chr9 67074896 67075203 -50787424 + AluJo SINE Alu 1 309 -3 1967 106 0 7 chr9 67075421 67075729 -50786898 - AluSc SINE Alu 0 306 1 289 213 0 16 chr9 67075729 67075790 -50786837 + MLT1J LTR MaLR 452 511 0 2168 106 0 0 chr9 67076406 67076699 -50785928 + AluSg SINE Alu 1 293 -17 1945 111 11 0 chr9 67076701 67077009 -50785618 + AluSg SINE Alu 1 311 0 2060 103 17 0 chr9 67077584 67077874 -50784753 + AluSx SINE Alu 1 295 -17 1663 162 3 30 chr9 67077921 67078224 -50784403 - AluJb SINE Alu -17 295 1 969 125 5 99 chr9 67078249 67078441 -50784186 + AluSg/x SINE Alu 125 298 -12 2185 111 0 0 chr9 67078443 67078749 -50783878 + AluSc SINE Alu 1 306 -3 1234 198 74 62 chr9 67079221 67079560 -50783067 - MER31B LTR ERV1 0 466 124 943 129 0 0 chr9 67079590 67079729 -50782898 + AluSq/x SINE Alu 2 140 -173 2042 113 3 0 chr9 67079735 67080026 -50782601 + AluSx SINE Alu 13 304 -8 239 0 32 0 chr9 67080026 67080057 -50782570 + (TA)n Simple_repeat Simple_repeat 1 32 0 329 216 29 69 chr9 67080057 67080159 -50782468 - L1MCa LINE L1 -4358 2068 1971 * 338 228 55 71 chr9 67080121 67080248 -50782379 + L1MCa LINE L1 1952 2076 -4350 * 377 244 12 88 chr9 67080180 67080340 -50782287 - L1MCa LINE L1 -4361 2065 1918 244 36 107 0 chr9 67080346 67080402 -50782225 + (TA)n Simple_repeat Simple_repeat 2 63 0 465 95 71 24 chr9 67080403 67080572 -50782055 + (TATAA)n Simple_repeat Simple_repeat 3 179 0 1754 109 55 80 chr9 67080589 67080956 -50781671 - THE1C LTR MaLR -11 446 3 763 198 51 82 chr9 67081294 67081550 -50781077 + MER39 LTR ERV1 164 535 -172 2391 77 3 3 chr9 67081559 67081872 -50780755 + AluSp SINE Alu 1 313 0 913 132 0 0 chr9 67081884 67082020 -50780607 + AluSg/x SINE Alu 154 289 -23 719 178 34 87 chr9 67082026 67082182 -50780445 + MER39 LTR ERV1 441 538 -27 1423 222 7 0 chr9 67082182 67082475 -50780152 - AluJb SINE Alu -17 295 1 719 178 34 87 chr9 67082475 67082502 -50780125 + MER39 LTR ERV1 538 565 0 2235 99 0 0 chr9 67082640 67082944 -50779683 - AluY SINE Alu -7 304 1 1491 174 3 45 chr9 67083240 67083386 -50779241 + AluJo SINE Alu 1 129 -183 1887 139 10 0 chr9 67083386 67083688 -50778939 + AluSx SINE Alu 6 310 -2 1491 174 3 45 chr9 67083688 67083851 -50778776 + AluJo SINE Alu 129 297 -15 522 70 0 0 chr9 67084294 67084365 -50778262 + (TCCCC)n Simple_repeat Simple_repeat 5 75 0 1158 167 72 72 chr9 67084369 67084540 -50778087 - AluJo SINE Alu -39 273 100 1756 177 0 7 chr9 67084540 67084840 -50777787 + AluJo SINE Alu 2 299 -13 1158 167 72 72 chr9 67084840 67084931 -50777696 - AluJo SINE Alu -211 101 11 539 146 0 73 chr9 67084964 67084984 -50777643 - FLAM_C SINE Alu -171 131 111 1545 126 0 13 chr9 67084984 67085215 -50777412 - AluSx SINE Alu -84 228 1 539 146 0 73 chr9 67085215 67085304 -50777323 - FLAM_C SINE Alu -191 111 30 826 130 123 45 chr9 67085304 67085458 -50777169 + AluSg/x SINE Alu 133 298 -14 2227 73 37 7 chr9 67085520 67085820 -50776807 - AluSp SINE Alu -4 309 1 763 189 34 7 chr9 67085820 67085968 -50776659 + MER67C LTR ERV1 125 276 -434 451 229 57 0 chr9 67085965 67086070 -50776557 + MER67C LTR ERV1 230 340 -370 * 916 182 36 0 chr9 67086068 67086260 -50776367 + MER67C LTR ERV1 506 704 -6 366 276 12 92 chr9 67086328 67086371 -50776256 + MER5B DNA MER1_type 21 66 -112 1841 132 0 40 chr9 67086371 67086674 -50775953 + AluSx SINE Alu 1 291 -21 366 276 12 92 chr9 67086674 67086793 -50775834 + MER5B DNA MER1_type 66 170 -8 2835 57 6 3 chr9 67087055 67087406 -50775221 - THE1A LTR MaLR 0 355 4 1877 137 0 0 chr9 67087406 67087690 -50774937 + AluJo SINE Alu 17 300 -12 933 166 41 133 chr9 67087857 67087973 -50774654 - MER31B LTR ERV1 -2 464 339 1944 113 3 0 chr9 67087973 67088255 -50774372 + AluSq SINE Alu 19 301 -12 2256 89 0 3 chr9 67088260 67088564 -50774063 + AluSp SINE Alu 1 303 -10 933 166 41 133 chr9 67088564 67088577 -50774050 - MER31B LTR ERV1 -131 335 322 2256 92 0 16 chr9 67088577 67088892 -50773735 + AluSg SINE Alu 1 310 0 933 166 41 133 chr9 67088892 67089075 -50773552 - MER31B LTR ERV1 -144 322 58 1521 124 71 38 chr9 67089077 67089367 -50773260 + MER39B LTR ERV1 1 268 -385 777 164 0 0 chr9 67089368 67089490 -50773137 + AluJo SINE Alu 2 123 -189 22 35 0 0 chr9 67089490 67089519 -50773108 + AT_rich Low_complexity Low_complexity 1 29 0 2266 118 16 16 chr9 67089519 67089883 -50772744 + MER39B LTR ERV1 255 618 -35 1114 105 0 7 chr9 67089883 67090036 -50772591 + LTR8 LTR ERV1 1 152 -539 210 143 48 0 chr9 67090038 67090080 -50772547 + T-rich Low_complexity Low_complexity 5 48 0 4335 87 2 9 chr9 67090120 67090134 -50772493 + LTR8 LTR ERV1 124 137 -554 2256 67 0 0 chr9 67090134 67090452 -50772175 - AluY SINE Alu 0 318 1 4335 87 2 9 chr9 67090452 67091008 -50771619 + LTR8 LTR ERV1 137 691 0 307 119 0 0 chr9 67091008 67091047 -50771580 + LTR49 LTR ERV1 557 595 0 346 221 15 0 chr9 67091064 67091132 -50771495 - MER31B LTR ERV1 -373 93 25 2129 80 59 0 chr9 67091281 67091567 -50771060 - AluSq SINE Alu -10 303 1 366 286 32 23 chr9 67091577 67091852 -50770775 + L1M4 LINE L1 3376 3672 -2474 646 204 16 59 chr9 67091853 67092007 -50770620 + AluJo SINE Alu 124 283 -29 180 0 0 0 chr9 67092007 67092027 -50770600 + (TA)n Simple_repeat Simple_repeat 2 21 0 1832 155 14 0 chr9 67092035 67092331 -50770296 + AluSx SINE Alu 3 302 -10 646 204 16 59 chr9 67092331 67092353 -50770274 + AluJo SINE Alu 290 301 -11 1000 250 78 6 chr9 67092354 67092686 -50769941 + L1M4 LINE L1 3676 4031 -2115 2709 85 6 0 chr9 67092775 67093128 -50769499 + THE1A LTR MaLR 1 355 0 11458 101 4 15 chr9 67093128 67093545 -50769082 + THE1A-int LTR MaLR 1 421 -1159 2248 90 7 0 chr9 67093545 67093844 -50768783 - AluSc SINE Alu -7 302 2 11458 101 4 15 chr9 67093844 67094639 -50767988 + THE1A-int LTR MaLR 421 1193 -387 2276 73 0 22 chr9 67094639 67094955 -50767672 - AluY SINE Alu -2 309 1 11458 101 4 15 chr9 67094955 67095339 -50767288 + THE1A-int LTR MaLR 1193 1580 0 2596 102 8 0 chr9 67095339 67095691 -50766936 + THE1A LTR MaLR 1 355 0 2450 66 0 0 chr9 67095905 67096209 -50766418 - AluSp SINE Alu -9 304 1 2146 103 0 26 chr9 67096211 67096521 -50766106 - AluSx SINE Alu -10 302 1 1836 177 68 133 chr9 67096544 67096924 -50765703 + LTR44 LTR ERV1 1 404 -115 1775 83 0 0 chr9 67096924 67097154 -50765473 + AluSg/x SINE Alu 69 298 -12 1836 177 68 133 chr9 67097154 67097171 -50765456 + LTR44 LTR ERV1 404 421 -98 757 130 8 38 chr9 67097171 67097302 -50765325 + FLAM_C SINE Alu 5 131 -2 1836 177 68 133 chr9 67097302 67097458 -50765169 + LTR44 LTR ERV1 421 519 0 1269 208 29 7 chr9 67097458 67097732 -50764895 + MER74A LTR ERVL 145 424 -134 2498 46 3 0 chr9 67097800 67098106 -50764521 - AluY SINE Alu -4 307 1 647 218 34 14 chr9 67098244 67098391 -50764236 + MER21B LTR ERV1 98 247 -616 2131 101 0 0 chr9 67098412 67098699 -50763928 + AluSq SINE Alu 1 287 -26 1870 116 4 4 chr9 67098708 67098985 -50763642 + AluSx SINE Alu 1 277 -35 2155 94 7 23 chr9 67099013 67099321 -50763306 + AluSq SINE Alu 1 303 -10 4947 106 16 1 chr9 67099336 67100017 -50762610 - LTR8 LTR ERV1 0 691 1 25 65 0 0 chr9 67100128 67100174 -50762453 + AT_rich Low_complexity Low_complexity 1 46 0 821 200 44 0 chr9 67100184 67100344 -50762283 - L1MDa LINE L1 -6321 219 53 * 849 260 27 4 chr9 67100341 67100599 -50762028 + L1M4 LINE L1 3418 3681 -2465 689 188 0 17 chr9 67100610 67100727 -50761900 + FLAM_C SINE Alu 4 118 -25 1300 192 64 21 chr9 67100749 67101077 -50761550 + L1M4 LINE L1 3685 4026 -2120 1011 167 183 41 chr9 67101077 67101357 -50761270 + AluJb SINE Alu 2 316 0 225 295 49 0 chr9 67101357 67101418 -50761209 + L1M4 LINE L1 4019 4082 -2064 555 208 7 62 chr9 67101427 67101571 -50761056 + L1M4 LINE L1 4067 4202 -1944 1780 142 7 3 chr9 67101574 67101869 -50760758 + AluSx SINE Alu 1 296 -16 1884 138 3 0 chr9 67101871 67102161 -50760466 + AluSx SINE Alu 2 292 -20 231 36 0 0 chr9 67102205 67102233 -50760394 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 1685 65 22 4 chr9 67102242 67102472 -50760155 - AluY SINE Alu -77 234 1 567 225 25 0 chr9 67102492 67102612 -50760015 - AluSq/x SINE Alu -189 124 2 1916 246 71 14 chr9 67102677 67103161 -50759466 + L1M4 LINE L1 4312 4844 -1302 558 0 0 0 chr9 67103161 67103223 -50759404 + (CATAA)n Simple_repeat Simple_repeat 3 64 0 1916 246 71 14 chr9 67103223 67103383 -50759244 + L1M4 LINE L1 4844 4993 -1153 1995 117 13 10 chr9 67103384 67103766 -50758861 + AluSg1 SINE Alu 1 383 0 1403 129 0 0 chr9 67103797 67104007 -50758620 + AluSg/x SINE Alu 100 309 -3 455 212 25 117 chr9 67104016 67104332 -50758295 + L1MEc LINE L1 1189 1475 -5088 237 214 44 89 chr9 67104339 67104480 -50758147 + L1MEc LINE L1 1304 1508 -4864 1683 168 0 29 chr9 67104485 67104795 -50757832 + AluJb SINE Alu 3 303 -9 2419 123 5 45 chr9 67104854 67105030 -50757597 + MER61E LTR ERV1 1 183 -386 2363 74 3 7 chr9 67105030 67105340 -50757287 + AluY SINE Alu 1 309 -2 2419 123 5 45 chr9 67105340 67105561 -50757066 + MER61E LTR ERV1 183 382 -187 1474 76 10 0 chr9 67105561 67105758 -50756869 + AluSq SINE Alu 1 199 -114 409 63 32 0 chr9 67105759 67105822 -50756805 + AluSq SINE Alu 241 305 -7 324 65 22 0 chr9 67105827 67105873 -50756754 + Alu SINE Alu 2 48 -253 201 138 0 0 chr9 67106445 67106474 -50756153 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 816 77 103 0 chr9 67106709 67106826 -50755801 + MER85 DNA T2_type 1 129 -10 2368 80 0 3 chr9 67107401 67107713 -50754914 + AluSq SINE Alu 1 311 -2 1834 148 13 7 chr9 67107715 67108019 -50754608 + AluSx SINE Alu 1 306 -6 975 222 68 8 chr9 67108240 67108474 -50754153 + AluJo SINE Alu 1 248 -64 483 224 42 7 chr9 67108673 67108816 -50753811 - L1MB8 LINE L1 0 6178 6031 2101 178 42 65 chr9 67108816 67108849 -50753778 - LTR8A LTR ERV1 0 727 695 5097 99 0 23 chr9 67108849 67109556 -50753071 - LTR8 LTR ERV1 0 691 1 2101 178 42 65 chr9 67109556 67109999 -50752628 - LTR8A LTR ERV1 -32 695 262 375 189 67 18 chr9 67110019 67110125 -50752502 - L1MB8 LINE L1 -139 6035 5930 751 189 0 0 chr9 67110169 67110317 -50752310 - L1M4 LINE L1 -1734 4412 4265 539 43 0 0 chr9 67110321 67110391 -50752236 - AluSp SINE Alu -9 304 235 1359 89 6 0 chr9 67110391 67110570 -50752057 - AluSp SINE Alu -133 180 1 322 202 47 54 chr9 67110607 67110736 -50751891 + L1MC/D LINE L1 5361 5488 -2320 333 140 35 0 chr9 67110808 67110865 -50751762 + LTR8 LTR ERV1 1 59 -632 * 594 43 0 0 chr9 67110859 67110929 -50751698 + U3 snRNA snRNA 1 70 -147 7437 37 10 0 chr9 67110929 67112586 -50750041 + L1PA5 LINE L1 4492 6153 -1 4151 119 16 66 chr9 67112595 67112610 -50750017 + LTR8 LTR ERV1 29 43 -648 279 0 0 0 chr9 67112610 67112641 -50749986 + (TA)n Simple_repeat Simple_repeat 2 32 0 * 369 0 0 0 chr9 67112640 67112681 -50749946 + (GA)n Simple_repeat Simple_repeat 2 42 0 4151 119 16 66 chr9 67112641 67113200 -50749427 + LTR8 LTR ERV1 43 628 -63 2229 93 0 3 chr9 67113200 67113500 -50749127 + AluSg SINE Alu 1 299 -11 2186 77 3 10 chr9 67113500 67113800 -50748827 + AluY SINE Alu 1 298 -13 4151 119 16 66 chr9 67113800 67113961 -50748666 + LTR8 LTR ERV1 626 691 0 2113 107 3 7 chr9 67114093 67114382 -50748245 - AluSq SINE Alu -25 288 1 264 267 143 45 chr9 67114757 67115023 -50747604 - L2 LINE L2 -1 3312 3021 182 162 0 27 chr9 67115155 67115192 -50747435 - L2 LINE L2 -5 3267 3232 2526 74 6 0 chr9 67115311 67115622 -50747005 - AluSp SINE Alu 0 313 1 2587 178 25 66 chr9 67115846 67116194 -50746433 - MER34C LTR ERV1 -4 581 266 2145 96 0 31 chr9 67116194 67116541 -50746086 + AluSp SINE Alu 1 338 0 2587 178 25 66 chr9 67116541 67116797 -50745830 - MER34C LTR ERV1 -319 266 1 1170 132 76 9 chr9 67116825 67117105 -50745522 + LTR54 LTR ERV1 4 364 -146 4979 55 25 36 chr9 67117108 67117783 -50744844 + MER4E LTR ERV1 1 668 -98 1847 150 87 23 chr9 67117792 67118138 -50744489 - LTR10A LTR ERV1 -61 548 181 632 93 12 0 chr9 67118198 67118284 -50744343 + AluSp SINE Alu 120 206 -107 261 218 138 11 chr9 67118302 67118389 -50744238 - LTR10A LTR ERV1 -511 98 1 467 82 0 55 chr9 67118389 67118462 -50744165 + MER4E LTR ERV1 665 733 -33 451 275 22 0 chr9 67118479 67118617 -50744010 + MER57A LTR ERV1 258 398 -5 595 126 0 21 chr9 67118921 67119016 -50743611 - AluJ/FLAM SINE Alu -215 97 5 205 324 15 0 chr9 67119030 67119098 -50743529 - L2 LINE L2 -20 3293 3225 2004 94 205 51 chr9 67119504 67119558 -50743069 - MSTC LTR MaLR 0 428 384 2238 125 0 0 chr9 67119558 67119861 -50742766 - AluSx SINE Alu -9 303 1 2004 94 205 51 chr9 67119861 67120177 -50742450 - MSTC LTR MaLR -44 384 1 2460 78 0 7 chr9 67120730 67121037 -50741590 - AluSq SINE Alu -8 305 1 431 246 82 22 chr9 67121166 67121300 -50741327 + FLAM_A SINE Alu 1 142 0 738 281 111 31 chr9 67121433 67121974 -50740653 - L1MC4 LINE L1 0 8042 7459 2309 110 0 7 chr9 67122108 67122418 -50740209 - AluSq SINE Alu -5 308 1 26 0 0 0 chr9 67122430 67122456 -50740171 + AT_rich Low_complexity Low_complexity 1 26 0 1045 169 128 64 chr9 67122465 67122575 -50740052 - AluJo SINE Alu -36 276 174 2136 131 0 0 chr9 67122575 67122866 -50739761 - AluSx SINE Alu -21 291 1 1045 169 128 64 chr9 67122866 67123004 -50739623 - AluJo SINE Alu -138 174 12 728 205 58 18 chr9 67123096 67123267 -50739360 + MER20 DNA MER1_type 40 217 -2 2101 124 0 13 chr9 67123376 67123675 -50738952 + AluSx SINE Alu 1 295 -17 200 184 0 0 chr9 67124871 67124909 -50737718 + (CCCCG)n Simple_repeat Simple_repeat 5 42 0 22 35 0 0 chr9 67124924 67124953 -50737674 + GC_rich Low_complexity Low_complexity 1 29 0 21 82 0 0 chr9 67124994 67125043 -50737584 + GC_rich Low_complexity Low_complexity 1 49 0 25 0 0 0 chr9 67125220 67125245 -50737382 + GC_rich Low_complexity Low_complexity 1 25 0 29 84 0 0 chr9 67125274 67125345 -50737282 + GC_rich Low_complexity Low_complexity 1 71 0 210 287 28 14 chr9 67125474 67125617 -50737010 + G-rich Low_complexity Low_complexity 4 148 0 256 301 83 38 chr9 67128602 67128735 -50733892 + MIR SINE MIR 118 256 -6 405 58 0 0 chr9 67129184 67129236 -50733391 + (TTCC)n Simple_repeat Simple_repeat 4 55 0 180 295 173 14 chr9 67129269 67129408 -50733219 + MIR SINE MIR 101 261 -1 2306 84 0 7 chr9 67130036 67130335 -50732292 - AluSc SINE Alu -2 307 11 540 271 224 52 chr9 67130373 67130438 -50732189 - L1MC4a LINE L1 -799 7009 6957 1992 133 7 13 chr9 67130438 67130739 -50731888 - AluSx SINE Alu -13 299 1 540 271 224 52 chr9 67130739 67131399 -50731228 - L1MC4a LINE L1 -851 6957 6412 2634 40 3 0 chr9 67131399 67131698 -50730929 - AluY SINE Alu -11 300 1 540 271 224 52 chr9 67131698 67132139 -50730488 - L1MC4a LINE L1 -1396 6412 5641 617 230 0 8 chr9 67132203 67132329 -50730298 - AluJo SINE Alu -177 135 11 2272 117 0 0 chr9 67132357 67132665 -50729962 + AluSg SINE Alu 1 308 -2 1309 102 57 0 chr9 67132665 67132842 -50729785 + AluSg/x SINE Alu 109 295 -17 2253 103 0 17 chr9 67132909 67133211 -50729416 + AluSx SINE Alu 5 301 -11 2986 120 76 22 chr9 67133296 67133836 -50728791 - Tigger3(Golem) DNA MER2_type -6 3023 2455 340 182 0 30 chr9 67133845 67133911 -50728716 - Tigger3(Golem) DNA MER2_type -2964 65 2 187 315 61 26 chr9 67133930 67134132 -50728495 + L2 LINE L2 2836 3052 -220 1931 133 14 7 chr9 67134220 67134514 -50728113 - AluSx SINE Alu -16 296 1 1563 157 0 94 chr9 67134522 67134841 -50727786 - AluJb SINE Alu -23 289 1 2196 86 31 0 chr9 67135166 67135457 -50727170 - AluSp SINE Alu -13 300 1 1374 206 79 59 chr9 67135558 67135626 -50727001 - MLT2F LTR ERVL -44 619 554 2505 61 0 7 chr9 67135626 67135922 -50726705 - AluSg SINE Alu -16 294 1 1374 206 79 59 chr9 67135922 67136405 -50726222 - MLT2F LTR ERVL -109 554 8 1488 246 51 29 chr9 67136511 67137056 -50725571 + ERVL LTR ERVL 564 1190 -4574 2162 123 3 0 chr9 67137154 67137454 -50725173 + AluSx SINE Alu 1 301 -11 914 167 0 0 chr9 67137454 67137598 -50725029 + AluJb SINE Alu 134 277 -35 671 275 64 34 chr9 67137655 67137966 -50724661 + L1MC4a LINE L1 5528 5852 -269 1468 154 47 104 chr9 67137966 67138330 -50724297 + MER2 DNA MER2_type 1 343 -1 671 275 64 34 chr9 67138330 67138386 -50724241 + L1MC4a LINE L1 5852 5905 -216 5470 131 65 34 chr9 67138461 67138581 -50724046 - L1MA4A LINE L1 -1 6302 6187 1998 131 0 7 chr9 67138581 67138878 -50723749 - AluSx SINE Alu -12 300 6 5470 131 65 34 chr9 67138878 67139879 -50722748 - L1MA4A LINE L1 -116 6187 5151 295 275 89 53 chr9 67139876 67140039 -50722588 - L1MDa LINE L1 -3568 2972 2816 * 1538 153 7 49 chr9 67140039 67140327 -50722300 + AluJb SINE Alu 23 298 -14 295 275 89 53 chr9 67140327 67140465 -50722162 - L1MDa LINE L1 -3724 2816 2660 5388 107 100 123 chr9 67140480 67141224 -50721403 - Tigger3b DNA MER2_type -1801 1227 468 2525 81 3 0 chr9 67141224 67141534 -50721093 + AluSq SINE Alu 1 311 -2 5388 107 100 123 chr9 67141534 67141818 -50720809 - Tigger3b DNA MER2_type -2560 468 179 2388 77 0 0 chr9 67141818 67142117 -50720510 - AluSg SINE Alu -11 299 1 5388 107 100 123 chr9 67142117 67142131 -50720496 - Tigger3b DNA MER2_type -2849 179 166 701 200 79 18 chr9 67142131 67142296 -50720331 - FAM SINE Alu 0 175 1 5388 107 100 123 chr9 67142296 67142428 -50720199 - Tigger3b DNA MER2_type -2862 166 78 1417 184 83 0 chr9 67142428 67142588 -50720039 - AluJb SINE Alu -12 300 155 396 88 0 0 chr9 67142588 67142645 -50719982 + (TG)n Simple_repeat Simple_repeat 2 58 0 1417 184 83 0 chr9 67142645 67142761 -50719866 - AluJb SINE Alu -157 155 1 5388 107 100 123 chr9 67142761 67142838 -50719789 - Tigger3b DNA MER2_type -2950 78 1 2169 107 0 7 chr9 67142883 67143182 -50719445 - AluY SINE Alu -14 297 1 189 0 0 0 chr9 67143726 67143747 -50718880 + (A)n Simple_repeat Simple_repeat 1 21 0 1774 126 7 29 chr9 67143747 67144025 -50718602 - AluSx SINE Alu -31 281 10 256 237 0 0 chr9 67144032 67144091 -50718536 - L1MDa LINE L1 -4620 1920 1862 906 134 0 0 chr9 67144119 67144238 -50718389 + FLAM_C SINE Alu 1 119 -24 22 0 0 0 chr9 67144238 67144260 -50718367 + AT_rich Low_complexity Low_complexity 1 22 0 1852 159 0 20 chr9 67144356 67144657 -50717970 - AluJb SINE Alu -17 295 1 386 254 89 28 chr9 67144662 67144874 -50717753 - L1MDa LINE L1 -4812 1728 1427 2119 131 3 0 chr9 67144959 67145265 -50717362 - AluSg SINE Alu -3 307 1 2286 52 49 0 chr9 67145266 67145552 -50717075 - AluSq SINE Alu -13 300 1 339 44 0 0 chr9 67145556 67145601 -50717026 + (TG)n Simple_repeat Simple_repeat 2 46 0 2285 88 3 0 chr9 67145601 67145885 -50716742 - AluSp SINE Alu -28 285 1 2458 66 3 13 chr9 67146144 67146447 -50716180 + AluY SINE Alu 1 300 -11 243 0 0 0 chr9 67146753 67146780 -50715847 + (TG)n Simple_repeat Simple_repeat 1 27 0 238 381 0 0 chr9 67147312 67147451 -50715176 + (CCA)n Simple_repeat Simple_repeat 3 141 0 1705 194 0 3 chr9 67148112 67148405 -50714222 - AluJo SINE Alu -20 292 1 2296 70 7 26 chr9 67148482 67148784 -50713843 + AluY SINE Alu 1 296 -15 533 206 38 30 chr9 67148796 67148927 -50713700 - L1MC5 LINE L1 -1106 6855 6724 560 197 79 0 chr9 67149109 67149236 -50713391 - Charlie4 DNA MER1_type -19 1942 1806 2294 86 7 3 chr9 67149281 67149572 -50713055 - AluSg SINE Alu -18 292 1 1943 117 33 52 chr9 67149656 67149963 -50712664 - AluSx SINE Alu -11 301 1 1828 136 22 54 chr9 67149969 67150286 -50712341 - AluSx SINE Alu -5 307 1 939 271 110 79 chr9 67150447 67151057 -50711570 - MER21B LTR ERV1 -211 652 24 932 233 32 0 chr9 67151217 67151436 -50711191 - Charlie4 DNA MER1_type -1711 250 25 2266 101 0 3 chr9 67151497 67151794 -50710833 - AluY SINE Alu -15 296 1 1468 188 28 28 chr9 67152022 67152310 -50710317 - AluJb SINE Alu -20 292 5 2206 89 0 43 chr9 67152342 67152646 -50709981 - AluY SINE Alu -20 291 1 867 201 18 12 chr9 67152913 67153077 -50709550 - FRAM SINE Alu -1 165 1 2399 104 3 0 chr9 67153206 67153513 -50709114 - AluSp SINE Alu -5 308 1 2320 231 107 51 chr9 67153837 67154044 -50708583 - MER21B LTR ERV1 -11 852 658 2019 127 3 3 chr9 67154044 67154358 -50708269 - AluSx SINE Alu 0 318 5 2320 231 107 51 chr9 67154358 67154946 -50707681 - MER21B LTR ERV1 -205 658 12 318 268 83 45 chr9 67155375 67155532 -50707095 + MIR SINE MIR 58 220 -42 1894 159 151 43 chr9 67155671 67156154 -50706473 + LTR10A LTR ERV1 14 548 -61 1986 198 106 21 chr9 67156330 67156629 -50705998 + LTR54 LTR ERV1 1 356 -154 2410 130 189 43 chr9 67156629 67156684 -50705943 - LTR24C LTR ERV1 0 635 589 2195 85 7 3 chr9 67156684 67156994 -50705633 + AluSp SINE Alu 1 311 0 2410 130 189 43 chr9 67156994 67157491 -50705136 - LTR24C LTR ERV1 -46 589 1 1986 198 106 21 chr9 67157491 67157661 -50704966 + LTR54 LTR ERV1 356 510 0 351 265 87 84 chr9 67157675 67157880 -50704747 - L1MC4 LINE L1 -130 7912 7709 192 40 0 0 chr9 67157880 67157905 -50704722 + (TG)n Simple_repeat Simple_repeat 2 26 0 1181 174 140 34 chr9 67157905 67158169 -50704458 - AluJb SINE Alu -10 292 1 351 265 87 84 chr9 67158169 67158467 -50704160 - L1MC4 LINE L1 -332 7710 7300 454 304 31 51 chr9 67158498 67158791 -50703836 - L1MC4 LINE L1 -558 7484 7198 22 0 0 0 chr9 67159247 67159269 -50703358 + AT_rich Low_complexity Low_complexity 1 22 0 2294 106 3 0 chr9 67159298 67159599 -50703028 - AluSq SINE Alu -11 302 1 209 57 29 0 chr9 67160013 67160048 -50702579 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 1801 115 91 0 chr9 67160054 67160306 -50702321 - AluSx SINE Alu -37 275 1 26 0 0 0 chr9 67160315 67160341 -50702286 + AT_rich Low_complexity Low_complexity 1 26 0 1864 155 7 14 chr9 67160368 67160658 -50701969 - AluSx SINE Alu -24 288 1 810 310 93 40 chr9 67160898 67161615 -50701012 - L2 LINE L2 -2054 1260 506 2322 96 10 0 chr9 67161988 67162280 -50700347 + AluSc SINE Alu 1 295 -14 21 36 0 0 chr9 67163203 67163231 -50699396 + AT_rich Low_complexity Low_complexity 1 28 0 289 220 60 131 chr9 67164100 67164185 -50698442 + MIR SINE MIR 74 143 -119 1892 112 53 30 chr9 67164185 67164489 -50698138 - AluSx SINE Alu -1 311 1 289 220 60 131 chr9 67164489 67164571 -50698056 + MIR SINE MIR 143 229 -33 2060 156 17 14 chr9 67164763 67165122 -50697505 - L1PA16 LINE L1 -2 6164 5805 3698 186 89 40 chr9 67165432 67165450 -50697177 - MER21B LTR ERV1 -2 861 845 1491 179 36 36 chr9 67165450 67165758 -50696869 - AluJo SINE Alu -4 308 1 3698 186 89 40 chr9 67165758 67166560 -50696067 - MER21B LTR ERV1 -18 845 1 682 260 232 16 chr9 67166802 67167125 -50695502 - MLT1G LTR MaLR -197 393 1 2425 91 0 7 chr9 67167467 67167775 -50694852 - AluSp SINE Alu -7 306 1 2165 97 3 17 chr9 67167881 67168180 -50694447 - AluSx SINE Alu -17 295 1 333 244 115 77 chr9 67168184 67168357 -50694270 - HAL1 LINE L1 -1008 1499 1309 1385 183 81 7 chr9 67168357 67168630 -50693997 + AluJo SINE Alu 1 293 -19 333 244 115 77 chr9 67168630 67168743 -50693884 - HAL1 LINE L1 -1198 1309 1202 2128 103 11 0 chr9 67168787 67169068 -50693559 - AluSx SINE Alu -18 294 11 2113 113 3 17 chr9 67169076 67169377 -50693250 - AluSg SINE Alu -13 297 1 577 204 0 20 chr9 67169509 67169607 -50693020 - FLAM_A SINE Alu -46 96 1 326 272 109 87 chr9 67169608 67169674 -50692953 - HAL1 LINE L1 -1471 1036 973 1853 139 0 11 chr9 67169674 67169961 -50692666 - AluJb SINE Alu -16 296 13 326 272 109 87 chr9 67169961 67170206 -50692421 - HAL1 LINE L1 -1534 973 718 230 319 17 35 chr9 67170308 67170417 -50692210 - MER110 LTR ERV1 -29 462 356 962 137 83 69 chr9 67170417 67170621 -50692006 - MER6B DNA MER2_type 0 210 4 210 242 15 30 chr9 67170892 67171024 -50691603 + (TTATA)n Simple_repeat Simple_repeat 1 130 0 1027 235 56 109 chr9 67171169 67171365 -50691262 - L1MC4a LINE L1 -1919 5889 5684 1939 144 17 0 chr9 67171365 67171657 -50690970 + AluSx SINE Alu 1 297 -15 1027 235 56 109 chr9 67171657 67171795 -50690832 - L1MC4a LINE L1 -2124 5684 5587 1515 141 39 0 chr9 67171795 67172029 -50690598 - AluJb SINE Alu -1 311 69 1027 235 56 109 chr9 67172029 67172190 -50690437 - L1MC4a LINE L1 -2221 5587 5419 519 329 169 3 chr9 67172344 67172688 -50689939 - HAL1 LINE L1 -587 1920 1520 773 176 0 15 chr9 67172693 67172824 -50689803 - FLAM_A SINE Alu -4 129 1 3105 146 119 79 chr9 67172917 67173345 -50689282 - L1MC1 LINE L1 -6 6327 5918 2856 3 0 3 chr9 67173345 67173655 -50688972 - AluYa5 SINE Alu -2 309 1 3105 146 119 79 chr9 67173655 67173806 -50688821 - L1MC1 LINE L1 -415 5918 5775 1832 184 0 0 chr9 67173806 67174115 -50688512 + AluJb SINE Alu 1 309 -3 3105 146 119 79 chr9 67174115 67174296 -50688331 - L1MC1 LINE L1 -558 5775 5535 1983 216 24 71 chr9 67174289 67174470 -50688157 - L1MCa LINE L1 -2935 3491 3303 * 1991 126 25 0 chr9 67174470 67174755 -50687872 + AluSg SINE Alu 3 294 -16 1983 216 24 71 chr9 67174755 67175289 -50687338 - L1MCa LINE L1 -3123 3303 2810 474 202 0 11 chr9 67175291 67175380 -50687247 + Tigger4(Zombi) DNA MER2_type 2 89 -2642 5044 120 74 2 chr9 67175382 67176183 -50686444 + Tigger4(Zombi) DNA MER2_type 1873 2730 -1 1032 251 36 14 chr9 67176186 67176743 -50685884 - L1MCa LINE L1 -3618 2808 2242 296 166 0 69 chr9 67176743 67176817 -50685810 - AluJb SINE Alu -169 133 76 476 140 54 0 chr9 67176819 67176912 -50685715 - L1MCa LINE L1 -4098 2328 2231 810 147 7 29 chr9 67176912 67177048 -50685579 - AluJb SINE Alu -179 133 1 449 129 0 0 chr9 67177055 67177125 -50685502 - L1MCa LINE L1 -4186 2240 2171 281 313 0 0 chr9 67177130 67177173 -50685454 + CT-rich Low_complexity Low_complexity 1 46 -34 2040 119 10 3 chr9 67177173 67177467 -50685160 - AluSx SINE Alu -16 296 1 281 313 0 0 chr9 67177467 67177503 -50685124 + CT-rich Low_complexity Low_complexity 45 80 0 358 257 22 108 chr9 67177542 67177612 -50685015 - L1MCa LINE L1 -4242 2184 2110 1841 165 58 12 chr9 67177612 67177940 -50684687 - MER2 DNA MER2_type -1 343 1 358 257 22 108 chr9 67177940 67178060 -50684567 - L1MCa LINE L1 -4316 2110 2037 1768 166 10 23 chr9 67178060 67178368 -50684259 + AluJb SINE Alu 1 304 -8 358 257 22 108 chr9 67178368 67178538 -50684089 - L1MCa LINE L1 -4389 2037 1854 1203 131 0 6 chr9 67178538 67178714 -50683913 - AluSg/x SINE Alu -8 304 130 4111 172 147 43 chr9 67178714 67178985 -50683642 - L1MCa LINE L1 -4580 1846 1605 1978 101 76 3 chr9 67178985 67179273 -50683354 - AluSx SINE Alu -1 311 3 4111 172 147 43 chr9 67179273 67179430 -50683197 - L1MCa LINE L1 -4821 1605 1466 2415 92 0 0 chr9 67179430 67179735 -50682892 + AluSg SINE Alu 1 305 -5 4111 172 147 43 chr9 67179735 67180430 -50682197 - L1MCa LINE L1 -4960 1466 605 1213 214 121 22 chr9 67180442 67180764 -50681863 - L1MCa LINE L1 -6037 389 36 2442 65 0 10 chr9 67180827 67181133 -50681494 - AluYa5 SINE Alu -8 303 1 2555 48 3 13 chr9 67181272 67181583 -50681044 - AluY SINE Alu -3 308 1 259 222 107 79 chr9 67182070 67182109 -50680518 - L1MEc LINE L1 -3364 2851 2815 1599 138 69 36 chr9 67182109 67182431 -50680196 - AluSx SINE Alu 0 331 1 259 222 107 79 chr9 67182431 67182605 -50680022 - L1MEc LINE L1 -3400 2815 2630 681 247 40 4 chr9 67182621 67182868 -50679759 - L1MEc LINE L1 -3546 2669 2414 696 273 113 60 chr9 67182941 67182999 -50679628 - L1MEc LINE L1 -4769 1627 1574 2326 82 7 3 chr9 67182999 67183293 -50679334 - AluSq SINE Alu -13 300 6 696 273 113 60 chr9 67183293 67183916 -50678711 - L1MEc LINE L1 -4822 1574 910 264 326 34 23 chr9 67184393 67184568 -50678059 - L1MEc LINE L1 -6128 268 92 2139 136 0 0 chr9 67184638 67184932 -50677695 - AluSx SINE Alu -16 296 3 1826 166 13 0 chr9 67184937 67185238 -50677389 - AluJo SINE Alu -7 305 1 258 243 43 0 chr9 67186769 67186839 -50675788 + MER113 DNA MER1_type? 146 218 -303 198 71 0 0 chr9 67188137 67188165 -50674462 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2025 136 0 0 chr9 67188172 67188451 -50674176 - AluSx SINE Alu -33 279 1 812 256 42 5 chr9 67188767 67188958 -50673669 - MIR SINE MIR -62 200 3 191 100 0 50 chr9 67189696 67189736 -50672891 + (TTTCC)n Simple_repeat Simple_repeat 3 40 0 373 294 65 38 chr9 67189917 67190101 -50672526 + MER5A DNA MER1_type 1 189 0 2165 88 39 0 chr9 67190128 67190413 -50672214 - AluSp SINE Alu -14 299 4 21 0 0 0 chr9 67191084 67191105 -50671522 + AT_rich Low_complexity Low_complexity 1 21 0 229 233 27 27 chr9 67191182 67191255 -50671372 - L1MC5 LINE L1 -51 7910 7838 2051 107 32 0 chr9 67191774 67192055 -50670572 + AluSp SINE Alu 2 291 -22 331 233 123 20 chr9 67192063 67192209 -50670418 - L1ME4a LINE L1 -2 6119 5959 1385 152 5 27 chr9 67192286 67192510 -50670117 + AluJo SINE Alu 1 219 -93 406 266 14 14 chr9 67192662 67192801 -50669826 - L1ME4a LINE L1 -439 5682 5544 1868 122 11 7 chr9 67193866 67194144 -50668483 + AluSx SINE Alu 30 308 -4 1635 197 78 9 chr9 67195253 67195629 -50666998 - MLT2D LTR ERVL -16 448 1 703 272 146 32 chr9 67196268 67196673 -50665954 - HAL1b LINE L1 -620 728 278 1757 187 178 36 chr9 67197031 67197480 -50665147 - MLT2B1 LTR ERVL -7 513 1 558 82 0 71 chr9 67200830 67200915 -50661712 - MADE1 DNA Mariner 0 80 2 574 275 27 0 chr9 67201069 67201218 -50661409 + Charlie1 DNA MER1_type 1 153 -2608 578 148 30 10 chr9 67201224 67201325 -50661302 + Charlie1 DNA MER1_type 2082 2184 -577 4949 142 23 56 chr9 67201335 67202277 -50660350 - L1MB2 LINE L1 0 6171 5261 1367 199 131 52 chr9 67202277 67202756 -50659871 + Charlie1 DNA MER1_type 2186 2713 -48 1704 176 14 3 chr9 67202756 67203046 -50659581 - AluJo SINE Alu -19 293 1 1367 199 131 52 chr9 67203046 67203100 -50659527 + Charlie1 DNA MER1_type 2713 2761 0 1698 146 7 7 chr9 67203319 67203621 -50659006 - AluJb SINE Alu 0 308 7 234 0 0 0 chr9 67203631 67203657 -50658970 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 194 288 144 52 chr9 67203876 67204029 -50658598 - L2 LINE L2 -43 3270 3104 230 331 118 27 chr9 67204115 67204378 -50658249 - L2 LINE L2 -385 2929 2643 613 191 40 8 chr9 67204480 67204606 -50658021 + L1MD3 LINE L1 7848 7977 -18 324 285 111 7 chr9 67205487 67205631 -50656996 - L1MC5 LINE L1 -74 7887 7729 1368 173 105 26 chr9 67205642 67205908 -50656719 - MER1B DNA MER1_type 0 339 53 1543 157 3 77 chr9 67206108 67206420 -50656207 - AluSx SINE Alu -19 293 5 4088 191 40 36 chr9 67206428 67207192 -50655435 - L1MB8 LINE L1 -35 6143 5383 2062 127 3 0 chr9 67207192 67207484 -50655143 - AluSx SINE Alu -19 293 1 4088 191 40 36 chr9 67207484 67207979 -50654648 - L1MB8 LINE L1 -795 5383 4891 2306 84 27 0 chr9 67207979 67208275 -50654352 + AluSg SINE Alu 7 310 0 4088 191 40 36 chr9 67208275 67208419 -50654208 - L1MB8 LINE L1 -1287 4891 4749 1565 159 126 4 chr9 67208419 67208690 -50653937 - AluSx SINE Alu -8 304 1 4088 191 40 36 chr9 67208690 67208882 -50653745 - L1MB8 LINE L1 -1429 4749 4525 1307 111 10 5 chr9 67208882 67209080 -50653547 - AluSx SINE Alu -69 243 45 2071 131 7 0 chr9 67209082 67209379 -50653248 - AluSc SINE Alu -10 299 1 369 160 0 68 chr9 67209382 67209485 -50653142 - L1MB8 LINE L1 -1706 4440 4345 2384 90 0 0 chr9 67209701 67210000 -50652627 + AluSq SINE Alu 1 299 -14 287 281 114 18 chr9 67210660 67210774 -50651853 + MER94 DNA DNA 10 134 0 324 234 72 36 chr9 67210954 67211065 -50651562 - MER5B DNA MER1_type -17 161 47 910 184 18 18 chr9 67211361 67211529 -50651098 + MER58B DNA MER1_type 174 341 0 21 57 0 0 chr9 67211553 67211588 -50651039 + AT_rich Low_complexity Low_complexity 1 35 0 216 158 0 0 chr9 67211623 67211661 -50650966 + T-rich Low_complexity Low_complexity 1 38 0 267 298 12 0 chr9 67212247 67212348 -50650279 + (TA)n Simple_repeat Simple_repeat 1 102 0 183 80 0 0 chr9 67214053 67214078 -50648549 + (ATG)n Simple_repeat Simple_repeat 3 27 0 26 0 0 0 chr9 67215120 67215146 -50647481 + AT_rich Low_complexity Low_complexity 1 26 0 26 30 0 0 chr9 67215536 67215569 -50647058 + AT_rich Low_complexity Low_complexity 1 33 0 451 105 40 0 chr9 67215708 67215784 -50646843 + MADE1 DNA Mariner 2 80 0 517 90 0 0 chr9 67216820 67216887 -50645740 + L1PA7 LINE L1 6068 6134 -20 1018 113 0 7 chr9 67217052 67217194 -50645433 - AluJb SINE Alu -171 141 1 2299 91 0 35 chr9 67217894 67218213 -50644414 + AluSg SINE Alu 1 308 -2 745 199 0 0 chr9 67218834 67218965 -50643662 - FLAM_C SINE Alu -1 132 2 2091 122 21 0 chr9 67219202 67219489 -50643138 - AluSx SINE Alu -17 295 3 2323 90 3 7 chr9 67219919 67220219 -50642408 + AluSx SINE Alu 1 299 -13 2228 108 3 3 chr9 67220576 67220881 -50641746 + AluSx SINE Alu 1 305 -7 1343 179 101 4 chr9 67220957 67221214 -50641413 - AluJo SINE Alu -30 282 1 1923 124 48 10 chr9 67222114 67222405 -50640222 + AluSx SINE Alu 1 302 -10 2489 74 3 0 chr9 67222738 67223036 -50639591 - AluSp SINE Alu -14 299 1 2183 88 16 23 chr9 67223110 67223415 -50639212 - AluSq SINE Alu -10 303 1 2414 76 17 0 chr9 67225400 67225701 -50636926 - AluSg SINE Alu -4 306 1 293 194 83 0 chr9 67226008 67226080 -50636547 - LTR54 LTR ERV1 -5 505 428 * 658 256 84 37 chr9 67226055 67226313 -50636314 - MER57A LTR ERV1 -56 347 106 1569 164 65 36 chr9 67226313 67226570 -50636057 - MER7A DNA MER2_type -2694 344 75 2523 88 0 0 chr9 67226570 67226877 -50635750 - AluSg SINE Alu -3 307 1 1569 164 65 36 chr9 67226877 67226955 -50635672 - MER7A DNA MER2_type -2963 75 1 658 256 84 37 chr9 67226955 67227050 -50635577 - MER57A LTR ERV1 -297 106 17 200 239 268 0 chr9 67227118 67227189 -50635438 + MER5A DNA MER1_type 57 146 -43 1203 142 71 1 chr9 67227517 67227783 -50634844 + MER2 DNA MER2_type 1 321 -24 4928 202 144 45 chr9 67228008 67228386 -50634241 + L1MB7 LINE L1 3544 3883 -2301 2458 86 0 0 chr9 67228386 67228687 -50633940 + AluSx SINE Alu 1 301 -11 4928 202 144 45 chr9 67228687 67229092 -50633535 + L1MB7 LINE L1 3883 4247 -1937 2193 110 0 0 chr9 67229092 67229382 -50633245 + AluSg SINE Alu 1 290 -20 4928 202 144 45 chr9 67229382 67230061 -50632566 + L1MB7 LINE L1 4247 4857 -1327 2053 106 10 13 chr9 67230061 67230362 -50632265 + AluSg SINE Alu 6 305 -5 4928 202 144 45 chr9 67230362 67231288 -50631339 + L1MB7 LINE L1 4857 6174 -10 183 200 38 88 chr9 67231337 67231373 -50631254 - MER5A DNA MER1_type -80 109 73 2046 146 0 0 chr9 67231373 67231675 -50630952 - AluSx SINE Alu -10 302 1 183 200 38 88 chr9 67231675 67231718 -50630909 - MER5A DNA MER1_type -116 73 34 2131 108 10 23 chr9 67232544 67232850 -50629777 + AluSq SINE Alu 1 302 -11 1408 109 94 0 chr9 67232850 67233051 -50629576 + AluSq SINE Alu 77 296 -17 2336 103 3 0 chr9 67234813 67235114 -50627513 + AluSp SINE Alu 2 303 -10 720 239 30 30 chr9 67235907 67236044 -50626583 + MER3 DNA MER1_type 13 152 -57 2301 95 0 0 chr9 67236044 67236338 -50626289 + AluY SINE Alu 1 294 -17 720 239 30 30 chr9 67236338 67236397 -50626230 + MER3 DNA MER1_type 151 209 0 1641 189 3 24 chr9 67236781 67237078 -50625549 + AluJo SINE Alu 2 292 -20 333 240 151 14 chr9 67237133 67237279 -50625348 - MIR SINE MIR -24 238 73 2289 114 3 0 chr9 67237346 67237653 -50624974 - AluSp SINE Alu -5 308 1 2867 195 67 51 chr9 67237747 67237873 -50624754 + L1MB7 LINE L1 5442 5564 -620 1889 143 23 16 chr9 67237873 67238181 -50624446 + AluJb SINE Alu 2 311 -1 2867 195 67 51 chr9 67238181 67238473 -50624154 + L1MB7 LINE L1 5564 5850 -334 2264 107 0 13 chr9 67238473 67238773 -50623854 + AluSx SINE Alu 1 296 -16 2867 195 67 51 chr9 67238773 67239065 -50623562 + L1MB7 LINE L1 5850 6165 -19 650 243 126 23 chr9 67239553 67239854 -50622773 - LTR65 LTR ERV1 -30 639 308 335 140 78 22 chr9 67240890 67241296 -50621331 + (TG)n Simple_repeat Simple_repeat 1 428 0 770 248 81 0 chr9 67241890 67242181 -50620446 + MER33 DNA MER1_type 1 310 -14 2152 112 3 0 chr9 67242734 67243046 -50619581 + AluSq SINE Alu 1 313 0 400 279 108 13 chr9 67243083 67243241 -50619386 - L1MC/D LINE L1 -2039 5769 5597 2104 122 0 0 chr9 67243241 67243527 -50619100 - AluSx SINE Alu -26 286 1 183 42 0 0 chr9 67243990 67244014 -50618613 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2236 118 0 7 chr9 67244028 67244332 -50618295 + AluSx SINE Alu 1 302 -10 2328 114 0 3 chr9 67244649 67244957 -50617670 + AluSx SINE Alu 1 307 -5 323 266 187 37 chr9 67245596 67245837 -50616790 + L1MC5 LINE L1 7507 7783 -178 707 160 0 90 chr9 67245845 67245989 -50616638 + FLAM_A SINE Alu 12 142 0 2403 103 0 0 chr9 67246539 67246849 -50615778 + AluSg SINE Alu 1 310 0 247 284 35 0 chr9 67246866 67247007 -50615620 + L1M4 LINE L1 2475 2620 -3526 1777 191 143 26 chr9 67247145 67247636 -50614991 + LTR10A LTR ERV1 1 548 -61 361 315 34 40 chr9 67247753 67248041 -50614586 + L1M4 LINE L1 3340 3627 -2519 2812 156 39 118 chr9 67248041 67248106 -50614521 - LTR8 LTR ERV1 0 691 622 2265 78 0 24 chr9 67248106 67248420 -50614207 - AluY SINE Alu 0 311 1 2812 156 39 118 chr9 67248420 67249103 -50613524 - LTR8 LTR ERV1 -69 622 2 361 315 34 40 chr9 67249103 67249141 -50613486 + L1M4 LINE L1 3627 3664 -2482 855 86 0 0 chr9 67249593 67249698 -50612929 + AluSx SINE Alu 1 105 -208 1976 185 68 34 chr9 67249698 67250142 -50612485 - LTR2B LTR ERV1 0 490 32 1679 99 0 0 chr9 67250159 67250372 -50612255 + AluSx SINE Alu 100 312 0 478 243 14 35 chr9 67250381 67250525 -50612102 + L1MC4a LINE L1 6538 6678 -1130 1511 91 0 0 chr9 67250528 67250726 -50611901 + MER41A LTR ERV1 1 198 -356 2150 92 102 10 chr9 67250726 67251094 -50611533 - LTR7 LTR ERV1 0 450 1 * 2693 78 5 37 chr9 67251094 67251323 -50611304 + MER41A LTR ERV1 194 408 -146 2229 112 16 0 chr9 67251323 67251626 -50611001 - AluSq SINE Alu -5 308 1 2693 78 5 37 chr9 67251626 67251769 -50610858 + MER41A LTR ERV1 408 554 0 1042 200 83 154 chr9 67251785 67251927 -50610700 + L1MC5 LINE L1 6697 6848 -1113 2131 107 0 4 chr9 67251927 67252245 -50610382 - AluSg SINE Alu 0 317 1 1042 200 83 154 chr9 67252245 67252798 -50609829 + L1MC5 LINE L1 6848 7317 -644 2271 82 6 25 chr9 67252798 67253113 -50609514 - AluSp SINE Alu -4 309 1 1042 200 83 154 chr9 67253113 67253317 -50609310 + L1MC5 LINE L1 7317 7534 -427 561 68 0 0 chr9 67253324 67253398 -50609229 + (TTCC)n Simple_repeat Simple_repeat 3 76 0 921 152 35 0 chr9 67253398 67253543 -50609084 - AluSx SINE Alu -27 285 136 508 151 0 0 chr9 67253543 67253616 -50609011 - AluSx SINE Alu -226 86 14 6354 53 8 0 chr9 67253632 67254406 -50608221 - L1PA7 LINE L1 -1 6153 5374 354 109 20 79 chr9 67254563 67254664 -50607963 + L1MC5 LINE L1 7636 7730 -231 1857 114 6 111 chr9 67254699 67254877 -50607750 - AluSx SINE Alu -4 308 113 180 0 0 0 chr9 67254877 67254897 -50607730 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2254 81 3 11 chr9 67254900 67255183 -50607444 - AluSp SINE Alu -32 281 1 1857 114 6 111 chr9 67255183 67255343 -50607284 - AluSx SINE Alu -201 111 2 1855 147 41 9 chr9 67255344 67255663 -50606964 - MER7A DNA MER2_type -19 327 1 3092 153 79 56 chr9 67256141 67256672 -50605955 + LTR8A LTR ERV1 1 518 -209 2382 92 0 9 chr9 67256672 67256988 -50605639 + AluSq SINE Alu 1 313 0 3092 153 79 56 chr9 67256988 67257011 -50605616 + LTR8A LTR ERV1 518 539 -188 1760 124 86 21 chr9 67257011 67257302 -50605325 + AluSg SINE Alu 1 310 0 3092 153 79 56 chr9 67257302 67257440 -50605187 + LTR8A LTR ERV1 539 710 -17 2143 107 14 7 chr9 67258293 67258583 -50604044 + AluSc SINE Alu 1 292 -17 268 31 0 0 chr9 67259300 67259332 -50603295 + (TTA)n Simple_repeat Simple_repeat 1 180 0 2363 70 0 7 chr9 67259332 67259616 -50603011 - AluSq SINE Alu -1 313 1 300 287 67 33 chr9 67259847 67259997 -50602630 + L1ME3 LINE L1 6005 6159 -3 2428 94 0 0 chr9 67260508 67260817 -50601810 - AluSx SINE Alu -3 309 1 2208 63 42 11 chr9 67261080 67261364 -50601263 + AluY SINE Alu 1 293 -18 320 258 41 0 chr9 67261838 67261935 -50600692 + (CA)n Simple_repeat Simple_repeat 2 102 0 762 165 8 23 chr9 67261966 67262099 -50600528 - FLAM_C SINE Alu 0 133 3 2334 103 3 0 chr9 67262479 67262770 -50599857 - AluSc SINE Alu -15 294 3 1678 183 139 12 chr9 67263197 67263608 -50599019 + MLT1C LTR MaLR 1 463 -4 1041 251 54 69 chr9 67263658 67263761 -50598866 + MER45C DNA AcHobo 1 104 -849 2106 116 0 7 chr9 67263761 67264080 -50598547 + AluSx SINE Alu 1 317 0 1041 251 54 69 chr9 67264080 67264398 -50598229 + MER45C DNA AcHobo 104 417 -536 1252 177 79 26 chr9 67264405 67264671 -50597956 + MER45C DNA AcHobo 674 953 0 960 210 201 24 chr9 67265413 67265741 -50596886 - MER31B LTR ERV1 -79 387 2 1587 170 14 7 chr9 67266489 67266777 -50595850 + MER49 LTR ERV1 1 290 -633 1350 234 14 20 chr9 67266816 67267167 -50595460 + MER4D LTR ERV1 555 903 0 576 170 178 22 chr9 67267190 67267325 -50595302 - MER45C DNA AcHobo -36 917 762 738 301 39 39 chr9 67267387 67267565 -50595062 - MER45C DNA AcHobo -543 410 230 2116 131 7 3 chr9 67267565 67267871 -50594756 + AluSx SINE Alu 1 307 -5 738 301 39 39 chr9 67267871 67268001 -50594626 - MER45C DNA AcHobo -722 231 102 2423 78 3 0 chr9 67268002 67268297 -50594330 + AluSg SINE Alu 1 296 -14 1158 176 57 0 chr9 67268299 67268337 -50594290 + AluJo SINE Alu 84 118 -194 189 74 0 0 chr9 67268337 67268364 -50594263 + (TAA)n Simple_repeat Simple_repeat 2 28 0 1158 176 57 0 chr9 67268364 67268535 -50594092 + AluJo SINE Alu 118 305 -7 232 193 193 12 chr9 67268535 67268618 -50594009 - MER45C DNA AcHobo -855 98 1 2316 76 0 0 chr9 67269211 67269487 -50593140 + AluSq SINE Alu 10 285 -28 183 100 0 0 chr9 67269496 67269526 -50593101 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 344 262 93 60 chr9 67269695 67269986 -50592641 - LTR48B LTR ERV1 -2 785 383 542 227 14 17 chr9 67270061 67270188 -50592439 - MER34 LTR ERV1 -433 109 1 856 130 11 34 chr9 67270188 67270365 -50592262 + MER96B DNA MER1_type? 245 417 0 249 316 0 13 chr9 67270365 67270441 -50592186 + L2 LINE L2 3213 3287 -26 230 286 0 0 chr9 67270790 67270884 -50591743 + GA-rich Low_complexity Low_complexity 1 94 0 333 273 19 37 chr9 67270970 67271131 -50591496 + G-rich Low_complexity Low_complexity 1 158 0 298 257 0 57 chr9 67271153 67271293 -50591334 + G-rich Low_complexity Low_complexity 6 137 0 351 215 0 105 chr9 67271402 67271602 -50591025 + G-rich Low_complexity Low_complexity 1 179 0 22 0 0 0 chr9 67272341 67272363 -50590264 + GC_rich Low_complexity Low_complexity 1 22 0 239 266 11 32 chr9 67272592 67272686 -50589941 - MER5A DNA MER1_type -97 92 1 195 163 50 0 chr9 67273786 67273832 -50588795 - MIR SINE MIR -49 159 111 710 213 104 27 chr9 67275354 67275537 -50587090 - MIR SINE MIR 0 262 66 337 197 79 0 chr9 67275763 67275839 -50586788 - MER5A DNA MER1_type -97 92 11 200 243 122 27 chr9 67275846 67275920 -50586707 + MER5C DNA MER1_type 1 81 -108 2254 115 16 0 chr9 67276267 67276572 -50586055 - AluSq SINE Alu -3 310 1 230 247 52 13 chr9 67276850 67276927 -50585700 + GA-rich Low_complexity Low_complexity 4 83 0 2372 84 3 0 chr9 67277270 67277566 -50585061 + AluY SINE Alu 1 297 -14 1299 183 5 0 chr9 67278154 67278373 -50584254 - AluJo SINE Alu -2 310 91 626 310 52 69 chr9 67278430 67278488 -50584139 - L1M4 LINE L1 -2855 3291 3234 1890 173 0 0 chr9 67278488 67278777 -50583850 - AluJo SINE Alu -21 291 3 626 310 52 69 chr9 67278777 67279141 -50583486 - L1M4 LINE L1 -2912 3234 2876 2560 67 0 10 chr9 67279167 67279479 -50583148 + AluY SINE Alu 1 309 -2 2271 109 0 7 chr9 67279605 67279907 -50582720 - AluSg SINE Alu -10 300 1 350 359 22 28 chr9 67279917 67280098 -50582529 - L1M4 LINE L1 -3317 2829 2650 1884 166 24 0 chr9 67280589 67280884 -50581743 - AluJb SINE Alu -10 302 1 839 200 24 0 chr9 67280982 67281147 -50581480 - MER3 DNA MER1_type 0 209 41 2360 112 0 3 chr9 67281206 67281518 -50581109 + AluSq SINE Alu 1 311 -2 2558 73 0 0 chr9 67283082 67283385 -50579242 - AluSq SINE Alu -10 303 1 261 0 0 0 chr9 67283467 67283496 -50579131 + (TG)n Simple_repeat Simple_repeat 1 29 0 2184 109 16 0 chr9 67283730 67284033 -50578594 - AluSx SINE Alu -4 308 1 180 161 48 0 chr9 67284723 67284785 -50577842 + (CA)n Simple_repeat Simple_repeat 2 66 0 2338 108 3 3 chr9 67285053 67285360 -50577267 + AluSq SINE Alu 1 307 -6 2545 93 0 0 chr9 67285375 67285688 -50576939 + AluSq SINE Alu 1 313 0 1986 103 16 78 chr9 67285700 67286020 -50576607 + AluY SINE Alu 1 300 -11 1935 279 111 41 chr9 67286062 67286073 -50576554 - HAL1 LINE L1 -492 2015 2006 1677 193 45 22 chr9 67286073 67286430 -50576197 + MLT1A1 LTR MaLR 1 365 0 1935 279 111 41 chr9 67286430 67286949 -50575678 - HAL1 LINE L1 -501 2006 1524 2498 122 89 27 chr9 67286949 67287153 -50575474 - MSTA LTR MaLR 0 428 238 1886 124 57 7 chr9 67287153 67287436 -50575191 - AluSp SINE Alu -16 297 1 2498 122 89 27 chr9 67287436 67287634 -50574993 - MSTA LTR MaLR -190 238 1 4080 163 57 21 chr9 67287634 67288389 -50574238 - LTR39 LTR ERV1 -1 782 1 1935 279 111 41 chr9 67288389 67289186 -50573441 - HAL1 LINE L1 -982 1525 594 421 320 91 14 chr9 67289383 67289658 -50572969 - HAL1 LINE L1 -2194 313 18 2508 58 10 0 chr9 67289792 67290085 -50572542 - AluY SINE Alu -13 298 3 1199 116 0 0 chr9 67290516 67290671 -50571956 + AluSp SINE Alu 135 289 -24 207 0 0 0 chr9 67290676 67290699 -50571928 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2233 124 3 0 chr9 67291515 67291821 -50570806 - AluSx SINE Alu -3 309 3 1624 98 47 18 chr9 67292119 67292389 -50570238 + LTR24B LTR ERV1 1 278 -298 2266 187 39 23 chr9 67292389 67292891 -50569736 - MER41B LTR ERV1 0 597 130 345 107 18 0 chr9 67292919 67292975 -50569652 + LTR24B LTR ERV1 274 330 -246 2469 218 102 84 chr9 67292983 67294052 -50568575 - MER52A LTR ERV1 -8 1747 660 1288 156 4 55 chr9 67294055 67294113 -50568514 + LTR24B LTR ERV1 332 391 -185 2250 108 0 16 chr9 67294113 67294427 -50568200 + AluY SINE Alu 1 309 -2 1288 156 4 55 chr9 67294427 67294624 -50568003 + LTR24B LTR ERV1 391 574 -2 4251 177 40 47 chr9 67295290 67296158 -50566469 + MER21B LTR ERV1 1 862 -1 227 262 134 60 chr9 67297354 67297503 -50565124 - L3b LINE CR1 -139 1444 1285 635 181 14 51 chr9 67297941 67298079 -50564548 + FLAM_A SINE Alu 1 133 0 2890 72 69 44 chr9 67298335 67298729 -50563898 + MLT2A1 LTR ERVL 1 408 -36 527 71 41 0 chr9 67298729 67298827 -50563800 + (TCTA)n Simple_repeat Simple_repeat 1 102 0 2890 72 69 44 chr9 67298827 67298865 -50563762 + MLT2A1 LTR ERVL 408 444 0 1754 257 68 31 chr9 67299090 67299736 -50562891 + L1ME3A LINE L1 5451 6120 -50 2185 102 35 0 chr9 67299798 67300083 -50562544 + AluSx SINE Alu 1 295 -17 2277 86 0 0 chr9 67300152 67300431 -50562196 + AluSc SINE Alu 27 305 -4 230 337 240 0 chr9 67300691 67301053 -50561574 + L2 LINE L2 2427 2875 -439 2392 98 0 0 chr9 67301247 67301542 -50561085 + AluSq SINE Alu 1 295 -18 303 281 75 85 chr9 67301562 67301734 -50560893 - L1MEd LINE L1 -5008 1111 942 2316 100 3 0 chr9 67301734 67302034 -50560593 - AluSp SINE Alu -12 301 1 303 281 75 85 chr9 67302034 67302142 -50560485 - L1MEd LINE L1 -5177 942 834 5098 145 14 31 chr9 67302175 67302845 -50559782 - L1MB1 LINE L1 -1 6167 5487 2063 136 3 16 chr9 67302845 67303155 -50559472 - AluSx SINE Alu -6 306 1 5098 145 14 31 chr9 67303155 67303610 -50559017 - L1MB1 LINE L1 -681 5487 5065 2216 116 0 26 chr9 67303610 67303921 -50558706 - AluSx SINE Alu -9 303 1 5098 145 14 31 chr9 67303921 67304082 -50558545 - L1MB1 LINE L1 -1103 5065 4903 544 138 0 46 chr9 67304073 67304190 -50558437 - L1MB1 LINE L1 -1654 4492 4380 * 721 27 40 40 chr9 67304190 67304340 -50558287 + (TCTA)n Simple_repeat Simple_repeat 1 150 0 544 138 0 46 chr9 67304340 67304352 -50558275 - L1MB1 LINE L1 -1766 4380 4369 208 286 238 29 chr9 67304353 67304458 -50558169 + L2 LINE L2 3186 3312 -1 2069 127 7 0 chr9 67304458 67304749 -50557878 - AluSg SINE Alu -15 295 3 330 313 141 8 chr9 67304755 67304883 -50557744 - L1MC/D LINE L1 -1987 5821 5677 234 0 0 0 chr9 67305878 67305904 -50556723 + (TG)n Simple_repeat Simple_repeat 2 27 0 846 225 50 35 chr9 67305953 67306291 -50556336 - L1MC5 LINE L1 -105 7856 7514 1007 291 86 12 chr9 67306307 67306716 -50555911 + LTR16A LTR ERVL 12 450 0 2404 86 0 7 chr9 67507729 67508030 -50354597 + AluSx SINE Alu 1 299 -13 778 215 84 19 chr9 67509584 67509960 -50352667 - Charlie4a DNA MER1_type -45 463 54 194 284 60 0 chr9 67510026 67510093 -50352534 + L2 LINE L2 3201 3271 -1 269 217 22 54 chr9 67510654 67510746 -50351881 - MLT1J LTR MaLR -44 467 379 705 238 31 5 chr9 67510843 67511036 -50351591 - MLT1J LTR MaLR -299 212 15 1974 246 78 14 chr9 67511097 67511713 -50350914 + L1ME3 LINE L1 5453 6117 -45 2928 10 0 0 chr9 67511713 67512022 -50350605 + AluYa5 SINE Alu 1 309 -2 1974 246 78 14 chr9 67512022 67512071 -50350556 + L1ME3 LINE L1 6117 6161 -1 292 273 55 47 chr9 67513870 67513998 -50348629 - HAL1 LINE L1 -149 2358 2230 3257 110 76 63 chr9 67514007 67514064 -50348563 - MER4B LTR ERV1 0 610 555 2146 104 31 0 chr9 67514064 67514351 -50348276 + AluSx SINE Alu 1 296 -16 3257 110 76 63 chr9 67514351 67514895 -50347732 - MER4B LTR ERV1 -55 555 1 1342 194 13 8 chr9 67514923 67515160 -50347467 + MER8 DNA MER2_type 2 239 0 1753 185 113 66 chr9 67515273 67515770 -50346857 - MLT2B1 LTR ERVL 0 520 1 328 269 56 0 chr9 67516385 67516493 -50346134 - HAL1 LINE L1 -722 1785 1672 1218 254 145 48 chr9 67516523 67516683 -50345944 - HAL1 LINE L1 -956 1551 1408 1468 80 27 0 chr9 67516683 67516871 -50345756 - AluY SINE Alu 0 311 119 1218 254 145 48 chr9 67516871 67517030 -50345597 - HAL1 LINE L1 -1099 1408 1266 1941 163 3 0 chr9 67517030 67517324 -50345303 - AluJo SINE Alu -17 295 1 1218 254 145 48 chr9 67517324 67517895 -50344732 - HAL1 LINE L1 -1241 1266 574 472 235 117 75 chr9 67517981 67518262 -50344365 - HAL1 LINE L1 -2096 411 119 231 266 96 0 chr9 67518301 67518395 -50344232 - L1MC4 LINE L1 -15 8027 7925 369 361 71 20 chr9 67518510 67518762 -50343865 - HAL1 LINE L1 -1470 1037 773 1261 194 33 111 chr9 67518763 67519159 -50343468 + MLT1A1 LTR MaLR 1 365 0 685 267 29 29 chr9 67519401 67519674 -50342953 + MLT2F LTR ERVL 111 383 -280 1907 174 0 0 chr9 67522214 67522518 -50340109 - AluJo SINE Alu -8 304 1 39 38 0 0 chr9 67523726 67523779 -50338848 + AT_rich Low_complexity Low_complexity 1 53 0 4610 145 19 36 chr9 67523780 67524017 -50338610 - L1PA15 LINE L1 -1 6164 5924 333 0 0 0 chr9 67524017 67524054 -50338573 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 1462 222 0 0 chr9 67524054 67524320 -50338307 - AluJb SINE Alu -32 280 15 4610 145 19 36 chr9 67524320 67524903 -50337724 - L1PA15 LINE L1 -239 5926 5357 216 0 0 0 chr9 67524923 67524947 -50337680 + (T)n Simple_repeat Simple_repeat 1 24 0 595 236 68 70 chr9 67526133 67526559 -50336068 + MLT1F LTR MaLR 125 516 -26 1014 204 0 23 chr9 67526571 67526787 -50335840 + L1M4 LINE L1 621 831 -5711 2377 171 70 57 chr9 67526787 67526826 -50335801 - MLT2B1 LTR ERVL 0 520 483 504 0 0 0 chr9 67526826 67526882 -50335745 + (TAGA)n Simple_repeat Simple_repeat 3 58 0 2377 171 70 57 chr9 67526882 67527208 -50335419 - MLT2B1 LTR ERVL -37 483 144 1548 202 116 19 chr9 67527208 67527569 -50335058 - MSTD LTR MaLR 0 396 1 2377 171 70 57 chr9 67527569 67527715 -50334912 - MLT2B1 LTR ERVL -376 144 1 1785 189 121 34 chr9 67527716 67527842 -50334785 + L1M4 LINE L1 828 942 -5625 186 43 0 0 chr9 67527842 67527865 -50334762 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1785 189 121 34 chr9 67527865 67527960 -50334667 + L1M4 LINE L1 942 1027 -5540 2498 80 0 10 chr9 67527960 67528273 -50334354 + AluY SINE Alu 1 310 -1 1785 189 121 34 chr9 67528273 67528393 -50334234 + L1M4 LINE L1 1027 1135 -5432 1509 131 87 51 chr9 67528393 67528668 -50333959 + AluJo SINE Alu 23 307 -5 225 0 0 0 chr9 67528669 67528694 -50333933 + (TA)n Simple_repeat Simple_repeat 2 26 0 1785 189 121 34 chr9 67528694 67528784 -50333843 + L1M4 LINE L1 1135 1216 -5351 2189 127 7 0 chr9 67528784 67529083 -50333544 + AluSx SINE Alu 1 301 -11 1785 189 121 34 chr9 67529083 67529137 -50333490 + L1M4 LINE L1 1216 1349 -5218 200 233 23 0 chr9 67529312 67529355 -50333272 + L2 LINE L2 3221 3264 -8 253 221 35 23 chr9 67530651 67530737 -50331890 + MLT1J LTR MaLR 230 316 -195 427 227 284 26 chr9 67531360 67531589 -50331038 + MLT1G LTR MaLR 2 289 -301 553 185 23 3 chr9 67531618 67531966 -50330661 + GA-rich Low_complexity Low_complexity 1 355 0 1747 207 157 26 chr9 67534025 67534523 -50328104 - MLT1E LTR MaLR -23 570 8 22 0 0 0 chr9 67534537 67534559 -50328068 + AT_rich Low_complexity Low_complexity 1 22 0 343 304 125 43 chr9 67534636 67535004 -50327623 + MLT1J2 LTR MaLR 53 450 0 1351 210 48 13 chr9 67535121 67535550 -50327077 - MLT1F LTR MaLR -18 524 37 282 287 65 0 chr9 67536255 67536363 -50326264 + Charlie7 DNA MER1_type 374 488 -2124 256 250 67 0 chr9 67536399 67536503 -50326124 + Charlie7 DNA MER1_type 590 700 -1912 3487 129 28 7 chr9 67536522 67537102 -50325525 - L1MA6 LINE L1 0 6300 5709 264 146 130 41 chr9 67537125 67537248 -50325379 + Charlie7 DNA MER1_type 2415 2548 -64 813 99 0 0 chr9 67537643 67537744 -50324883 + AluSx SINE Alu 1 101 -212 3044 89 7 24 chr9 67537746 67538197 -50324430 - LTR22A LTR ERVK 0 458 16 1484 120 9 21 chr9 67538197 67538430 -50324197 + AluSx SINE Alu 81 310 0 438 139 23 12 chr9 67539101 67539187 -50323440 - MER53 DNA DNA -80 109 23 391 182 45 0 chr9 67539109 67539197 -50323430 + MER53 DNA DNA 96 187 -2 * 287 327 106 0 chr9 67539209 67539313 -50323314 + MIR SINE MIR 50 164 -98 1862 187 111 87 chr9 67539766 67540307 -50322320 + MLT2B3 LTR ERVL 1 554 0 324 0 0 0 chr9 67541014 67541050 -50321577 + (CA)n Simple_repeat Simple_repeat 1 36 0 561 84 60 0 chr9 67541152 67541235 -50321392 - MER72 LTR ERV1 -634 88 1 906 249 159 29 chr9 67541235 67541712 -50320915 - L1M4 LINE L1 -2199 3947 3409 2165 116 3 23 chr9 67541727 67542029 -50320598 - AluSg SINE Alu -13 297 2 372 346 111 0 chr9 67542094 67542337 -50320290 - MLT1E LTR MaLR -267 326 57 576 265 130 15 chr9 67543664 67543864 -50318763 - MIR SINE MIR 0 262 40 428 254 199 57 chr9 67544421 67544787 -50317840 + L2 LINE L2 2454 2871 -443 197 291 73 18 chr9 67544974 67545084 -50317543 + L2 LINE L2 3156 3271 -1 513 318 71 5 chr9 67545542 67545740 -50316887 + MIR SINE MIR 47 257 -5 930 302 24 46 chr9 67546178 67546246 -50316381 - L1ME LINE L1 -413 5751 5683 252 0 0 0 chr9 67546246 67546274 -50316353 + (TG)n Simple_repeat Simple_repeat 1 28 0 930 302 24 46 chr9 67546274 67546702 -50315925 - L1ME LINE L1 -481 5683 5266 321 253 0 36 chr9 67546708 67546781 -50315846 - L1MC4 LINE L1 -1339 6703 6632 2220 111 0 3 chr9 67546781 67547078 -50315549 - AluSg SINE Alu -14 296 1 2565 255 40 3 chr9 67547110 67547737 -50314890 - MER82 DNA MER2_type -1 652 3 312 263 17 8 chr9 67547798 67547916 -50314711 - L1ME LINE L1 -922 5224 5106 405 219 34 0 chr9 67547933 67548052 -50314575 - L1ME LINE L1 -1095 5051 4929 1747 161 30 22 chr9 67548125 67548467 -50314160 - MLT1A1 LTR MaLR -11 354 11 507 290 74 81 chr9 67548862 67549321 -50313306 - L2 LINE L2 0 3313 2858 660 255 98 0 chr9 67549383 67549567 -50313060 + MER3 DNA MER1_type 1 202 -7 2101 157 0 0 chr9 67550042 67550354 -50312273 + AluJb SINE Alu 1 312 0 609 245 28 7 chr9 67550533 67550701 -50311926 - L1ME1 LINE L1 -294 5872 5703 2457 67 0 3 chr9 67550925 67551222 -50311405 + AluSc SINE Alu 1 296 -13 470 262 87 0 chr9 67551409 67551535 -50311092 - MER3 DNA MER1_type 0 209 73 627 168 270 22 chr9 67553008 67553234 -50309393 - MER4C LTR ERV1 -19 446 165 1448 174 52 47 chr9 67553261 67553605 -50309022 - MER4A LTR ERV1 -318 346 1 2364 91 3 0 chr9 67554666 67554964 -50307663 + AluSq SINE Alu 1 299 -14 431 274 14 7 chr9 67554970 67555116 -50307511 - Charlie2 DNA MER1_type -9 2853 2707 279 0 0 0 chr9 67555152 67555183 -50307444 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1518 219 0 3 chr9 67555188 67555471 -50307156 - AluJo SINE Alu -30 282 1 1757 197 42 64 chr9 67555694 67556166 -50306461 + MLT1C LTR MaLR 6 467 0 1025 254 50 53 chr9 67556186 67556379 -50306248 - Charlie2 DNA MER1_type -427 2435 2243 2013 129 4 0 chr9 67556379 67556694 -50305933 - AluSc SINE Alu 0 316 1 1025 254 50 53 chr9 67556694 67556815 -50305812 - Charlie2 DNA MER1_type -619 2243 2123 234 62 0 0 chr9 67556815 67556847 -50305780 + (TCTCTG)n Simple_repeat Simple_repeat 2 33 0 1025 254 50 53 chr9 67556847 67557109 -50305518 - Charlie2 DNA MER1_type -739 2123 1859 1632 265 83 36 chr9 67557111 67557726 -50304901 - L1MEd LINE L1 -5226 893 250 2612 114 22 3 chr9 67558004 67558372 -50304255 + THE1C LTR MaLR 1 375 0 591 195 85 8 chr9 67559203 67559321 -50303306 + FLAM_A SINE Alu 1 127 -6 2611 57 0 0 chr9 67560109 67560410 -50302217 + AluY SINE Alu 1 301 -10 299 114 23 0 chr9 67561036 67561080 -50301547 + Alu SINE Alu 1 45 -257 472 316 102 38 chr9 67561089 67561431 -50301196 + HAL1 LINE L1 803 1166 -1341 977 110 0 98 chr9 67561432 67561596 -50301031 + AluJo SINE Alu 3 150 -162 539 222 0 0 chr9 67561596 67561695 -50300932 + AluSg/x SINE Alu 208 306 -3 939 277 95 43 chr9 67561701 67561847 -50300780 + HAL1 LINE L1 1169 1306 -1201 2100 104 7 0 chr9 67561847 67562134 -50300493 + AluSc SINE Alu 12 300 -9 939 277 95 43 chr9 67562134 67562546 -50300081 + HAL1 LINE L1 1306 1756 -751 318 250 16 57 chr9 67562605 67562729 -50299898 + HAL1 LINE L1 1879 1997 -510 2422 123 47 45 chr9 67562887 67563260 -50299367 - MSTC LTR MaLR 0 428 52 2152 138 0 0 chr9 67563260 67563564 -50299063 - AluSx SINE Alu -8 304 1 2422 123 47 45 chr9 67563564 67563613 -50299014 - MSTC LTR MaLR -376 52 5 1193 215 84 30 chr9 67563951 67564286 -50298341 - MLT1A2 LTR MaLR -21 353 1 236 311 74 15 chr9 67564398 67564533 -50298094 + L1ME LINE L1 5657 5799 -371 2024 142 0 0 chr9 67564612 67564907 -50297720 + AluSx SINE Alu 1 295 -17 2253 118 0 0 chr9 67565304 67565608 -50297019 + AluSg SINE Alu 1 304 -6 23 0 0 0 chr9 67565761 67565784 -50296843 + AT_rich Low_complexity Low_complexity 1 23 0 1373 130 60 0 chr9 67566132 67566348 -50296279 + MER30 DNA MER1_type 2 230 0 3360 259 80 52 chr9 67566460 67568386 -50294241 - L1ME1 LINE L1 -4 6162 4155 749 189 82 74 chr9 67568397 67568667 -50293960 + MLT1D LTR MaLR 1 272 -233 1176 63 0 0 chr9 67568668 67568810 -50293817 - THE1C LTR MaLR -4 371 230 885 103 9 0 chr9 67568875 67568991 -50293636 + AluSg/x SINE Alu 121 237 -73 188 280 0 19 chr9 67569207 67569314 -50293313 + (TATG)n Simple_repeat Simple_repeat 2 106 0 219 302 0 0 chr9 67569330 67569416 -50293211 + (TG)n Simple_repeat Simple_repeat 2 87 0 216 305 12 24 chr9 67571020 67571102 -50291525 - L2 LINE L2 -6 3266 3186 2997 267 76 25 chr9 67571164 67571920 -50290707 + L1MEc LINE L1 34 751 -5645 2260 110 0 0 chr9 67571920 67572212 -50290415 - AluSg1 SINE Alu -17 292 1 2997 267 76 25 chr9 67572212 67573245 -50289382 + L1MEc LINE L1 751 2128 -4268 256 48 48 0 chr9 67573245 67573287 -50289340 + (CAA)n Simple_repeat Simple_repeat 2 45 0 2997 267 76 25 chr9 67573287 67573463 -50289164 + L1MEc LINE L1 2128 2294 -4102 5478 177 51 21 chr9 67573463 67574513 -50288114 + L1PA16 LINE L1 4106 5123 -1043 2095 126 3 31 chr9 67574513 67574831 -50287796 + AluSg SINE Alu 2 310 0 5478 177 51 21 chr9 67574831 67575783 -50286844 + L1PA16 LINE L1 5123 6166 0 3514 234 46 56 chr9 67575779 67576274 -50286353 + L1MEc LINE L1 2245 2743 -3472 * 2204 115 0 13 chr9 67576274 67576587 -50286040 - AluSg SINE Alu 0 310 2 3514 234 46 56 chr9 67576587 67577030 -50285597 + L1MEc LINE L1 2743 3189 -3026 2380 64 37 3 chr9 67577030 67577325 -50285302 + AluSc SINE Alu 1 305 -4 3514 234 46 56 chr9 67577325 67577432 -50285195 + L1MEc LINE L1 3189 3296 -2919 625 221 0 0 chr9 67577432 67577554 -50285073 - FLAM_A SINE Alu -11 122 1 3514 234 46 56 chr9 67577554 67577909 -50284718 + L1MEc LINE L1 3296 3633 -2582 32 81 0 0 chr9 67577909 67577983 -50284644 + AT_rich Low_complexity Low_complexity 1 74 0 632 281 162 2 chr9 67578216 67578510 -50284117 - MLT1G3 LTR MaLR -207 323 11 244 205 0 0 chr9 67578531 67578570 -50284057 - MLT1C LTR MaLR -7 460 422 2000 98 77 3 chr9 67578816 67579102 -50283525 + AluSc SINE Alu 1 307 -2 537 266 113 26 chr9 67579136 67579365 -50283262 + MIR SINE MIR 14 262 0 1951 95 78 3 chr9 67580394 67580677 -50281950 + AluSg SINE Alu 1 304 -6 359 200 283 0 chr9 67582112 67582232 -50280395 - MER5A DNA MER1_type -35 154 1 325 268 62 18 chr9 67582384 67582496 -50280131 - MER103 DNA DNA -48 118 2 273 298 106 0 chr9 67582847 67582951 -50279676 + L2 LINE L2 3145 3259 -13 21 0 0 0 chr9 67585085 67585106 -50277521 + AT_rich Low_complexity Low_complexity 1 21 0 2204 211 48 104 chr9 67585297 67586115 -50276512 + L1MC4 LINE L1 7281 7995 0 317 222 44 78 chr9 67587318 67587434 -50275193 + MIR SINE MIR 37 147 -63 768 230 46 0 chr9 67587977 67588151 -50274476 + MIR SINE MIR 60 241 -21 393 248 229 26 chr9 67588875 67589185 -50273442 - L1ME4a LINE L1 -73 6048 5676 470 283 37 97 chr9 67590661 67591011 -50271616 - MER102b DNA MER1_type -4 337 9 2279 71 7 4 chr9 67592066 67592347 -50270280 + AluSg SINE Alu 1 282 -28 226 0 0 0 chr9 67592347 67592372 -50270255 + (GAAAA)n Simple_repeat Simple_repeat 2 80 0 21 57 0 0 chr9 67593826 67593861 -50268766 + GC_rich Low_complexity Low_complexity 1 35 0 207 139 0 0 chr9 67594195 67594231 -50268396 + (T)n Simple_repeat Simple_repeat 1 36 0 22 0 0 0 chr9 67596785 67596807 -50265820 + AT_rich Low_complexity Low_complexity 1 22 0 208 233 0 0 chr9 67597801 67597844 -50264783 + MIR SINE MIR 213 255 -7 351 346 76 42 chr9 67598025 67598288 -50264339 - L1ME4a LINE L1 -5 6116 5845 288 207 0 0 chr9 67599199 67599257 -50263370 - L2 LINE L2 -2 3270 3213 388 277 8 23 chr9 67599662 67599792 -50262835 + CT-rich Low_complexity Low_complexity 1 128 0 1995 232 67 17 chr9 67601448 67601969 -50260658 + MLT1E2 LTR MaLR 80 626 0 231 231 205 0 chr9 67602612 67602690 -50259937 - MIR3 SINE MIR -9 199 106 1178 184 33 122 chr9 67604489 67604881 -50257746 + MLT1A1 LTR MaLR 1 357 -8 186 43 0 0 chr9 67605264 67605287 -50257340 + (GA)n Simple_repeat Simple_repeat 1 23 0 382 270 44 17 chr9 67606851 67607048 -50255579 + LTR33 LTR ERVL 50 264 -259 435 286 127 4 chr9 67607493 67607849 -50254778 + LTR16A1 LTR ERVL 17 457 0 1218 178 14 10 chr9 67607945 67608237 -50254390 + MLT1A1 LTR MaLR 1 365 0 1749 135 0 0 chr9 67608552 67608804 -50253823 + AluSg SINE Alu 46 297 -13 181 292 73 21 chr9 67609780 67609876 -50252751 + MIR SINE MIR 42 142 -120 225 94 0 0 chr9 67610118 67610150 -50252477 + (CA)n Simple_repeat Simple_repeat 1 32 0 217 255 0 0 chr9 67612103 67612150 -50250477 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 183 205 26 0 chr9 67612502 67612541 -50250086 - MIR SINE MIR -99 109 70 1656 146 57 4 chr9 67614326 67614606 -50248021 - AluJb SINE Alu -17 295 1 2214 101 7 0 chr9 67617091 67617389 -50245238 - AluSq SINE Alu -3 310 11 855 323 80 25 chr9 67618152 67618743 -50243884 + L1MC4a LINE L1 5265 5887 -1921 237 163 0 0 chr9 67619245 67619294 -50243333 + (TG)n Simple_repeat Simple_repeat 2 50 0 314 234 149 0 chr9 67619666 67619773 -50242854 - MLT1A2 LTR MaLR 0 374 279 392 208 13 13 chr9 67619775 67619852 -50242775 - MLT-int LTR MaLR -590 1145 1069 1540 239 34 6 chr9 67619854 67620209 -50242418 + MLT1A1 LTR MaLR 1 365 0 340 284 174 25 chr9 67622037 67622273 -50240354 - LTR16A LTR ERVL -161 289 19 336 306 170 19 chr9 67622410 67622675 -50239952 + LTR16C LTR ERVL 75 379 -112 1301 238 121 21 chr9 67622998 67623418 -50239209 + MLT1C LTR MaLR 1 462 -5 270 297 69 20 chr9 67623575 67623676 -50238951 - MIR SINE MIR -58 204 99 1841 144 6 29 chr9 67625975 67626288 -50236339 + AluSx SINE Alu 1 306 -6 712 305 16 3 chr9 67627773 67628003 -50234624 + MIR SINE MIR 25 259 -3 1310 212 13 39 chr9 67631442 67631748 -50230879 + AluJb SINE Alu 1 298 -14 626 255 92 80 chr9 67631915 67632273 -50230354 + MLT1G1 LTR MaLR 7 348 -219 200 59 29 0 chr9 67632332 67632366 -50230261 + (TTTTTA)n Simple_repeat Simple_repeat 2 36 0 1530 113 31 0 chr9 67632546 67632775 -50229852 - AluSg/x SINE Alu -6 304 69 529 328 134 6 chr9 67633414 67633749 -50228878 + MLT1J2 LTR MaLR 73 450 0 1811 166 30 51 chr9 67633949 67634322 -50228305 + MLT1A1 LTR MaLR 1 365 0 2779 87 5 14 chr9 67634745 67635112 -50227515 - THE1B LTR MaLR 0 364 1 326 333 48 6 chr9 67639086 67639251 -50223376 + HAL1 LINE L1 2 173 -2334 198 0 0 0 chr9 67639322 67639344 -50223283 + (TG)n Simple_repeat Simple_repeat 1 22 0 888 243 102 4 chr9 67639394 67639836 -50222791 - MLT1G LTR MaLR 0 590 13 1597 300 76 55 chr9 67639910 67641082 -50221545 + HAL1 LINE L1 426 1622 -885 2040 110 34 17 chr9 67641330 67641622 -50221005 - AluSg SINE Alu -11 299 3 1405 142 31 0 chr9 67642086 67642312 -50220315 - MER46A DNA MER2_type -1 235 3 509 306 54 72 chr9 67642332 67642793 -50219834 - L1MC4a LINE L1 -1941 5867 5415 2493 70 0 17 chr9 67642808 67643109 -50219518 + AluY SINE Alu 1 296 -15 325 320 94 49 chr9 67643500 67643850 -50218777 - L1MC4a LINE L1 -815 5331 4966 1610 188 163 0 chr9 67645861 67646229 -50216398 + MSTA LTR MaLR 1 428 0 185 290 0 32 chr9 67646812 67646874 -50215753 + L2 LINE L2 3245 3304 -9 1078 295 124 10 chr9 67647162 67647654 -50214973 - MLT1H1 LTR MaLR -1 554 7 353 245 206 27 chr9 67652911 67653095 -50209532 + MIR SINE MIR 40 256 -6 223 238 167 36 chr9 67653807 67653891 -50208736 - MER5B DNA MER1_type -49 129 35 1841 145 11 7 chr9 67654573 67654876 -50207751 - AluJb SINE Alu 0 304 1 379 266 48 8 chr9 67656049 67656173 -50206454 + MER20B DNA MER1_type 34 162 -621 332 275 62 21 chr9 67656469 67656662 -50205965 + MER20B DNA MER1_type 496 696 -87 183 95 27 68 chr9 67656663 67656737 -50205890 + (TCTA)n Simple_repeat Simple_repeat 3 73 0 251 282 13 0 chr9 67656740 67656818 -50205809 + MER20B DNA MER1_type 674 752 -31 323 311 16 8 chr9 67657923 67658045 -50204582 + (TG)n Simple_repeat Simple_repeat 1 123 0 295 284 189 0 chr9 67658534 67658661 -50203966 - MER46C DNA MER2_type -187 151 1 2357 81 3 10 chr9 67659002 67659300 -50203327 + AluSg SINE Alu 1 296 -14 360 0 0 0 chr9 67660282 67660322 -50202305 + (TG)n Simple_repeat Simple_repeat 2 41 0 2505 71 3 0 chr9 67660332 67660629 -50201998 + AluY SINE Alu 1 298 -13 2394 242 35 27 chr9 67660629 67661256 -50201371 + MER72 LTR ERV1 87 718 -4 1521 292 102 13 chr9 67661292 67661902 -50200725 + L1M4 LINE L1 3964 4669 -1477 191 35 0 35 chr9 67661902 67661931 -50200696 + (TG)n Simple_repeat Simple_repeat 1 28 0 1521 292 102 13 chr9 67661931 67662153 -50200474 + L1M4 LINE L1 4669 4870 -1276 232 331 56 38 chr9 67662591 67662751 -50199876 + L1ME3A LINE L1 6008 6170 0 2029 152 0 16 chr9 67662847 67663157 -50199470 - AluSx SINE Alu -7 305 1 2321 114 0 3 chr9 67664143 67664441 -50198186 + AluSq SINE Alu 1 297 -16 1287 201 0 4 chr9 67664582 67664831 -50197796 + L1M4 LINE L1 5474 5721 -457 1080 51 32 0 chr9 67665283 67665441 -50197186 + (GAAA)n Simple_repeat Simple_repeat 2 164 0 1635 203 3 3 chr9 67665477 67665778 -50196849 + AluJo SINE Alu 4 304 -8 266 280 17 34 chr9 67665836 67665954 -50196673 + L1MEc LINE L1 1915 2030 -4366 375 346 131 11 chr9 67666006 67666266 -50196361 - L1MEd LINE L1 -5308 811 521 240 35 0 0 chr9 67666307 67666336 -50196291 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 24 53 0 0 chr9 67666770 67666808 -50195819 + AT_rich Low_complexity Low_complexity 1 38 0 195 42 0 0 chr9 67666892 67666916 -50195711 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 186 103 0 0 chr9 67666938 67666967 -50195660 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 218 324 40 0 chr9 67666971 67667045 -50195582 - L2 LINE L2 -31 3282 3206 252 258 75 83 chr9 67668212 67668332 -50194295 - L1MEd LINE L1 -5947 172 54 398 317 115 6 chr9 67669584 67669767 -50192860 - LTR16C LTR ERVL 0 491 289 342 269 10 0 chr9 67670504 67670608 -50192019 + L1ME3A LINE L1 5238 5342 -804 2101 190 80 25 chr9 67670608 67671045 -50191582 + MLT2B1 LTR ERVL 1 461 -59 283 294 16 8 chr9 67671047 67671173 -50191454 + L1ME3A LINE L1 5678 5804 -366 291 186 81 12 chr9 67671180 67671341 -50191286 + (TA)n Simple_repeat Simple_repeat 1 172 0 277 254 101 59 chr9 67671363 67671532 -50191095 + L1ME3A LINE L1 5779 5954 -216 283 287 43 26 chr9 67671573 67671688 -50190939 + HAL1 LINE L1 2390 2506 -1 192 238 0 0 chr9 67672062 67672125 -50190502 + (CA)n Simple_repeat Simple_repeat 2 64 0 265 353 13 19 chr9 67672132 67672288 -50190339 + (CATG)n Simple_repeat Simple_repeat 4 158 0 215 260 0 0 chr9 67675177 67675227 -50187400 + (TA)n Simple_repeat Simple_repeat 2 51 0 310 263 66 15 chr9 67876455 67876592 -49986035 - L1MC/D LINE L1 -1982 5826 5683 384 22 0 0 chr9 67877939 67877984 -49984643 + (CA)n Simple_repeat Simple_repeat 2 46 0 2100 163 106 14 chr9 67878473 67878896 -49983731 - L1MC3 LINE L1 -144 7641 7180 294 247 26 26 chr9 67878901 67878978 -49983649 - MLT1F1 LTR MaLR -456 111 35 285 187 220 0 chr9 67878978 67879069 -49983558 - L1MC3 LINE L1 -688 7097 6987 417 313 107 12 chr9 67879072 67879315 -49983312 - L1MC/D LINE L1 -1751 4395 4130 407 304 14 0 chr9 67879530 67879668 -49982959 + MLT1L LTR MaLR 138 277 -338 256 307 18 18 chr9 67879826 67879940 -49982687 + MLT1K LTR MaLR 465 578 -10 260 294 77 109 chr9 67880215 67880436 -49982191 + L2 LINE L2 2962 3175 -97 364 282 48 0 chr9 67880574 67880677 -49981950 - MER5B DNA MER1_type -64 114 7 493 192 23 90 chr9 67880896 67881051 -49981576 - MER5B DNA MER1_type 0 189 25 276 185 62 15 chr9 67881448 67881513 -49981114 + MIR3 SINE MIR 113 180 -28 362 269 290 21 chr9 67882298 67882629 -49979998 + L2 LINE L2 2522 2941 -373 2264 94 0 0 chr9 67883025 67883322 -49979305 - AluSq SINE Alu -16 297 1 202 350 70 37 chr9 67883552 67883766 -49978861 + MIR SINE MIR 26 246 -16 362 320 32 32 chr9 67884733 67884858 -49977769 - MIR SINE MIR -118 144 20 1241 216 27 97 chr9 67885111 67885513 -49977114 + MLT1A2 LTR MaLR 1 374 0 469 171 31 42 chr9 67887272 67887536 -49975091 + (CA)n Simple_repeat Simple_repeat 1 260 0 1895 288 39 0 chr9 67888343 67888905 -49973722 - L1MD3 LINE L1 -10 7985 7402 291 182 195 0 chr9 67888923 67889000 -49973627 - MLT1F1 LTR MaLR -472 95 4 1638 202 104 35 chr9 67889572 67890003 -49972624 - MLT1C LTR MaLR -5 462 2 433 286 94 70 chr9 67890029 67890582 -49972045 + HAL1 LINE L1 470 1035 -1472 244 196 27 27 chr9 67890644 67890756 -49971871 + (TCTA)n Simple_repeat Simple_repeat 2 113 0 694 241 163 60 chr9 67890769 67891435 -49971192 + HAL1 LINE L1 1681 2507 0 1102 271 51 3 chr9 67893158 67893508 -49969119 - MLT2E LTR ERVL -3 625 259 361 276 41 16 chr9 67893579 67893702 -49968925 - MLT2E LTR ERVL -492 136 11 270 259 0 35 chr9 67894438 67894523 -49968104 + G-rich Low_complexity Low_complexity 4 85 0 183 80 0 0 chr9 67895306 67895331 -49967296 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 597 228 101 23 chr9 67896366 67896585 -49966042 + L1ME3A LINE L1 5895 6130 -40 1705 123 32 14 chr9 67897111 67897303 -49965324 + Tigger1 DNA MER2_type 1532 1732 -686 1975 106 3 0 chr9 67897303 67897587 -49965040 + AluSp SINE Alu 21 305 -8 1705 123 32 14 chr9 67897587 67897679 -49964948 + Tigger1 DNA MER2_type 1732 1821 -597 326 290 81 77 chr9 67897930 67898227 -49964400 - L2 LINE L2 -2762 552 255 243 219 94 16 chr9 67900089 67900153 -49962474 - MIR SINE MIR -108 100 32 2211 105 0 3 chr9 67901322 67901628 -49960999 + AluSc SINE Alu 1 305 -4 1343 274 54 37 chr9 67904405 67904958 -49957669 + MLT1F1 LTR MaLR 1 567 0 257 360 22 43 chr9 67904995 67905134 -49957493 - MER5A DNA MER1_type -21 168 33 951 279 104 25 chr9 67905297 67905778 -49956849 + MLT1G1 LTR MaLR 7 525 -70 1999 136 0 7 chr9 67905778 67906122 -49956505 + AluSx SINE Alu 1 342 0 184 200 15 108 chr9 67906240 67906305 -49956322 - L2 LINE L2 -231 3041 2983 788 275 54 30 chr9 67907081 67907416 -49955211 + MLT1F1 LTR MaLR 67 409 -158 1978 116 17 10 chr9 67909432 67909724 -49952903 - AluSq SINE Alu -17 296 3 198 0 0 0 chr9 67909747 67909769 -49952858 + (T)n Simple_repeat Simple_repeat 1 22 0 211 313 77 33 chr9 67910678 67910860 -49951767 + L3b LINE CR1 1189 1378 -205 696 196 110 59 chr9 67912124 67912379 -49950248 - LTR37A LTR ERV1 -75 351 84 2057 125 85 80 chr9 67912617 67912811 -49949816 - MSTA LTR MaLR -2 426 234 2114 41 0 26 chr9 67912811 67913080 -49949547 + L1PA5 LINE L1 5889 6150 -4 2057 125 85 80 chr9 67913080 67913309 -49949318 - MSTA LTR MaLR -194 234 1 432 239 246 14 chr9 67913729 67913871 -49948756 - MER5A DNA MER1_type 0 189 15 1603 212 64 73 chr9 67914159 67914828 -49947799 + L1MDb LINE L1 852 1504 -4902 233 286 33 22 chr9 67915887 67915978 -49946649 - LTR16C LTR ERVL -317 174 83 184 261 89 64 chr9 67916283 67916440 -49946187 + L2 LINE L2 1590 1750 -1564 308 367 90 16 chr9 67916522 67916767 -49945860 + L2 LINE L2 2697 2959 -355 29 78 0 0 chr9 67916843 67916907 -49945720 + AT_rich Low_complexity Low_complexity 1 64 0 1050 269 87 40 chr9 67917241 67917592 -49945035 - MLT1J2 LTR MaLR -1 449 73 2459 128 61 7 chr9 67917592 67917999 -49944628 + MSTB1 LTR MaLR 4 432 0 1050 269 87 40 chr9 67917999 67918071 -49944556 - MLT1J2 LTR MaLR -377 73 6 2282 30 0 0 chr9 67918136 67918404 -49944223 + L1PA2 LINE L1 5888 6155 0 424 317 115 6 chr9 67919150 67919333 -49943294 + MIR SINE MIR 38 240 -22 391 247 194 24 chr9 67919476 67919646 -49942981 - MER3 DNA MER1_type -8 201 3 921 314 0 4 chr9 67920305 67920557 -49942070 - MIR SINE MIR -10 252 2 24 32 0 0 chr9 67920843 67920874 -49941753 + AT_rich Low_complexity Low_complexity 1 31 0 290 297 50 20 chr9 67920943 67921044 -49941583 + Charlie8 DNA MER1_type 128 231 -2186 1823 242 60 22 chr9 67921110 67921693 -49940934 - L1ME1 LINE L1 -5 6161 5557 468 337 49 26 chr9 67921953 67922220 -49940407 + L1MCb LINE L1 46 318 -5727 397 292 110 82 chr9 67922508 67922864 -49939763 - L2 LINE L2 -3 3269 2904 2090 122 0 0 chr9 67923315 67923618 -49939009 - AluSx SINE Alu -9 303 1 247 339 97 5 chr9 67923765 67923960 -49938667 - L1ME2 LINE L1 -219 5945 5733 508 207 41 16 chr9 67924016 67924137 -49938490 + AluJb SINE Alu 2 125 -187 24 0 0 0 chr9 67924149 67924173 -49938454 + AT_rich Low_complexity Low_complexity 1 24 0 234 228 35 63 chr9 67924298 67924424 -49938203 - L1ME1 LINE L1 -746 5400 5283 2478 46 3 0 chr9 67924424 67924727 -49937900 - AluYa5 SINE Alu -7 304 1 234 228 35 63 chr9 67924727 67924812 -49937815 - L1ME1 LINE L1 -863 5283 5197 210 353 0 0 chr9 67927573 67927624 -49935003 - L3 LINE CR1 -16 1561 1511 269 240 31 4 chr9 67928058 67928285 -49934342 + (CA)n Simple_repeat Simple_repeat 1 233 0 2140 113 0 0 chr9 67928953 67929262 -49933365 + AluSc SINE Alu 1 309 0 683 269 84 38 chr9 67929293 67929661 -49932966 - L1ME2 LINE L1 -2072 5736 5352 235 318 104 27 chr9 67929394 67929731 -49932896 - L1PA8A LINE L1 -498 5633 5271 * 2142 200 109 14 chr9 67930185 67931243 -49931384 + L1MB4 LINE L1 4479 6174 -6 455 113 38 0 chr9 67931263 67931343 -49931284 + L1MB8 LINE L1 6095 6177 -1 2164 38 26 0 chr9 67931351 67931616 -49931011 + AluYb8 SINE Alu 34 305 -13 882 196 119 30 chr9 67931710 67931945 -49930682 - L1ME1 LINE L1 -1094 5052 4797 2706 213 56 11 chr9 67932753 67933377 -49929250 - L1MB8 LINE L1 -12 6166 5515 2783 82 21 0 chr9 67933402 67933782 -49928845 + L1PA10 LINE L1 5781 6168 0 1053 191 77 48 chr9 67933800 67934255 -49928372 + L1MB7 LINE L1 5561 6174 -10 1362 145 0 26 chr9 67934783 67935017 -49927610 + LTR64 LTR ERVK 1 228 -330 1055 152 0 0 chr9 67935018 67935176 -49927451 + AluJb SINE Alu 136 293 -19 1492 176 108 10 chr9 67935176 67935483 -49927144 + LTR64 LTR ERVK 222 558 0 227 272 25 12 chr9 67935791 67935872 -49926755 + L1M4 LINE L1 2922 3003 -3143 36 40 0 0 chr9 67936262 67936312 -49926315 + AT_rich Low_complexity Low_complexity 1 50 0 403 178 20 50 chr9 67936312 67936401 -49926226 - L1PA12 LINE L1 -4 6164 6077 2426 70 0 0 chr9 67936401 67936702 -49925925 - AluY SINE Alu -10 301 1 403 178 20 50 chr9 67936702 67936713 -49925914 - L1PA12 LINE L1 -91 6077 6067 1919 149 3 0 chr9 67937041 67937349 -49925278 + AluSq SINE Alu 1 309 -4 2494 165 18 7 chr9 67938141 67938584 -49924043 - L1MB2 LINE L1 -2 6169 5722 400 286 132 35 chr9 67939030 67939372 -49923255 - L2 LINE L2 -411 2903 2529 204 85 37 61 chr9 67939373 67939455 -49923172 + (TTTAA)n Simple_repeat Simple_repeat 3 82 0 216 299 35 23 chr9 67940003 67940090 -49922537 + MIR3 SINE MIR 113 200 -8 376 245 276 10 chr9 67941079 67941275 -49921352 + MIR SINE MIR 10 257 -5 422 190 20 0 chr9 67942516 67942616 -49920011 + GA-rich Low_complexity Low_complexity 2 103 0 208 360 65 49 chr9 67943412 67943779 -49918848 + L2 LINE L2 2167 2539 -775 195 69 0 0 chr9 67943920 67943949 -49918678 + (T)n Simple_repeat Simple_repeat 1 29 0 23 0 0 0 chr9 67946330 67946353 -49916274 + AT_rich Low_complexity Low_complexity 1 23 0 639 205 0 0 chr9 67946353 67946470 -49916157 - AluJb SINE Alu -28 284 168 391 332 132 27 chr9 67946662 67947222 -49915405 + L2 LINE L2 105 723 -2591 529 192 40 24 chr9 67947227 67947352 -49915275 - MER94 DNA DNA 0 134 8 296 309 287 20 chr9 67947391 67947834 -49914793 + L2 LINE L2 740 1300 -2014 2581 223 78 55 chr9 67947844 67948719 -49913908 + L1MDa LINE L1 1401 2295 -4245 218 304 96 7 chr9 67948757 67948892 -49913735 + L2 LINE L2 1700 1846 -1468 261 0 0 0 chr9 67949599 67949628 -49912999 + (TG)n Simple_repeat Simple_repeat 1 29 0 180 0 0 0 chr9 67949627 67949647 -49912980 + (GA)n Simple_repeat Simple_repeat 1 20 0 * 1916 191 33 64 chr9 67951023 67951505 -49911122 - MLT1C LTR MaLR 0 467 1 789 239 91 0 chr9 67951952 67952149 -49910478 + MER115 DNA AcHobo 445 659 -34 754 262 104 65 chr9 67953626 67954012 -49908615 + MLT1J LTR MaLR 4 374 -137 875 19 19 0 chr9 67954012 67954120 -49908507 + (TTTC)n Simple_repeat Simple_repeat 2 111 0 2064 102 0 7 chr9 67954125 67954408 -49908219 - AluSq SINE Alu -30 283 3 754 262 104 65 chr9 67954408 67954504 -49908123 + MLT1J LTR MaLR 377 511 0 384 206 39 29 chr9 67957016 67957118 -49905509 + LTR16C LTR ERVL 80 182 -309 278 282 24 0 chr9 67957250 67957335 -49905292 + MER63 DNA MER1_type 1 713 -123 374 245 0 0 chr9 67957423 67957525 -49905102 + MER63 DNA MER1_type 920 1021 -40 367 243 12 0 chr9 67957902 67958075 -49904552 + (TG)n Simple_repeat Simple_repeat 1 175 0 300 250 22 0 chr9 67958088 67958180 -49904447 + (TG)n Simple_repeat Simple_repeat 2 95 0 233 278 7 0 chr9 67958196 67958347 -49904280 + (TG)n Simple_repeat Simple_repeat 2 153 0 273 271 0 0 chr9 67958423 67958578 -49904049 + (TG)n Simple_repeat Simple_repeat 1 155 0 339 248 86 19 chr9 67958807 67958912 -49903715 + LTR67 LTR ERVL 436 547 -10 300 271 56 9 chr9 67959412 67959519 -49903108 + MER5A DNA MER1_type 78 189 0 1607 262 137 25 chr9 67961538 67962100 -49900527 - MER21B LTR ERV1 -196 667 43 286 252 59 8 chr9 67962596 67962715 -49899912 + (TG)n Simple_repeat Simple_repeat 1 125 0 605 262 112 21 chr9 67962782 67963068 -49899559 + MER63 DNA MER1_type 746 1057 -4 324 261 33 22 chr9 67963798 67963890 -49898737 + L1MC4 LINE L1 6610 6702 -1340 2259 74 0 10 chr9 67966116 67966412 -49896215 - AluSc SINE Alu -1 308 16 212 255 61 71 chr9 67969300 67969398 -49893229 - L2 LINE L2 -54 3259 3163 259 291 205 17 chr9 67969984 67970101 -49892526 + MIR SINE MIR 8 146 -116 243 276 13 13 chr9 67971073 67971149 -49891478 - MIR SINE MIR -130 132 57 418 328 130 10 chr9 67971460 67971652 -49890975 + MIR SINE MIR 31 245 -17 274 57 0 0 chr9 67972610 67972645 -49889982 - MLT2B1 LTR ERVL 0 515 481 258 56 0 0 chr9 67972657 67972693 -49889934 + (TC)n Simple_repeat Simple_repeat 1 36 0 248 0 31 0 chr9 67972785 67972817 -49889810 + (GA)n Simple_repeat Simple_repeat 1 33 0 * 282 56 0 0 chr9 67972816 67972852 -49889775 + (TG)n Simple_repeat Simple_repeat 2 37 0 1941 212 56 9 chr9 67972858 67973301 -49889326 - MLT2B1 LTR ERVL -56 464 1 24 0 0 0 chr9 67974701 67974725 -49887902 + AT_rich Low_complexity Low_complexity 1 24 0 1990 113 7 0 chr9 67974725 67975008 -49887619 - AluSg SINE Alu -17 293 9 618 95 0 0 chr9 67975015 67975099 -49887528 - AluSc SINE Alu -11 298 215 354 237 89 7 chr9 67975832 67975967 -49886660 + MER103 DNA DNA 5 150 -16 2635 48 0 3 chr9 67976409 67976718 -49885909 - AluY SINE Alu -3 308 1 182 256 86 60 chr9 67976784 67976901 -49885726 + MIR SINE MIR 132 251 -11 1700 193 45 25 chr9 67977116 67977266 -49885361 + MLT1A1 LTR MaLR 1 147 -218 1855 158 3 13 chr9 67977266 67977569 -49885058 + AluJo SINE Alu 11 310 -2 1700 193 45 25 chr9 67977569 67977776 -49884851 + MLT1A1 LTR MaLR 147 365 0 266 260 31 21 chr9 67979090 67979186 -49883441 + MLT1H LTR MaLR 126 222 -327 2171 109 0 10 chr9 67979445 67979761 -49882866 + AluSx SINE Alu 1 312 0 1151 246 110 29 chr9 67980441 67980786 -49881841 - LTR16C LTR ERVL -2 489 117 267 269 39 70 chr9 67981942 67982098 -49880529 + ERVL LTR ERVL 4661 4811 -953 520 347 63 25 chr9 67982133 67982577 -49880050 + ERVL LTR ERVL 3773 4233 -1531 935 342 65 29 chr9 67982614 67983610 -49879017 + ERVL LTR ERVL 4256 5287 -367 472 280 88 24 chr9 67983893 67984143 -49878484 + LTR16A LTR ERVL 128 393 -57 1455 217 41 49 chr9 67986914 67987305 -49875322 + MLT1B LTR MaLR 3 390 0 210 329 12 0 chr9 67989129 67989211 -49873416 + CT-rich Low_complexity Low_complexity 2 84 0 275 292 158 0 chr9 67991048 67991168 -49871459 - MIR SINE MIR -106 156 18 1408 218 26 32 chr9 67992065 67992404 -49870223 - MLT1A1 LTR MaLR -15 350 14 6420 161 36 10 chr9 67992414 67993854 -49868773 + L1MC1 LINE L1 4752 6327 -6 1132 234 172 25 chr9 67994000 67994402 -49868225 - MLT1E1 LTR MaLR -7 647 187 494 252 9 0 chr9 67994431 67994538 -49868089 - MLT1E1 LTR MaLR -544 110 3 270 316 75 35 chr9 67994630 67994804 -49867823 + MIR SINE MIR 56 236 -26 1346 222 0 9 chr9 67995790 67996105 -49866522 + MER33 DNA MER1_type 1 312 -12 214 333 16 0 chr9 67996637 67996700 -49865927 + L2 LINE L2 3115 3178 -94 2256 117 10 0 chr9 67998335 67998643 -49863984 - AluSx SINE Alu -1 311 1 228 313 0 0 chr9 68000789 68000856 -49861771 + (CATA)n Simple_repeat Simple_repeat 2 68 0 183 276 0 0 chr9 68000861 68000948 -49861679 + (CA)n Simple_repeat Simple_repeat 2 88 0 201 74 0 0 chr9 68003053 68003080 -49859547 + (TAGA)n Simple_repeat Simple_repeat 4 30 0 505 183 0 0 chr9 68003146 68003228 -49859399 + Tigger1 DNA MER2_type 2337 2418 0 36 23 0 0 chr9 68003228 68003271 -49859356 + AT_rich Low_complexity Low_complexity 1 43 0 272 174 0 29 chr9 68003271 68003340 -49859287 - L1MA5A LINE L1 0 6297 6231 2100 137 0 6 chr9 68003977 68004291 -49858336 - AluSx SINE Alu 0 312 1 232 114 23 0 chr9 68004291 68004335 -49858292 + L2 LINE L2 2601 2645 -669 2234 164 48 40 chr9 68004414 68004895 -49857732 - MER31A LTR ERV1 0 485 1 1273 147 20 32 chr9 68005522 68005773 -49856854 + L1MB3 LINE L1 5936 6183 0 776 179 24 0 chr9 68005973 68006096 -49856531 - LTR12 LTR ERV1 -234 480 355 331 197 0 0 chr9 68006096 68006167 -49856460 - LTR30 LTR ERV1 -102 620 550 449 159 297 22 chr9 68006167 68006349 -49856278 - LTR12 LTR ERV1 -430 284 53 270 231 0 0 chr9 68006349 68006401 -49856226 - LTR30 LTR ERV1 -670 52 1 237 132 0 0 chr9 68007048 68007086 -49855541 + (CA)n Simple_repeat Simple_repeat 1 38 0 2272 128 0 0 chr9 68007345 68007657 -49854970 + AluSq SINE Alu 1 312 -1 1138 204 12 12 chr9 68007986 68008241 -49854386 - L1MD3 LINE L1 0 7995 7741 387 0 0 0 chr9 68008765 68008808 -49853819 + (TG)n Simple_repeat Simple_repeat 2 44 0 1921 197 8 5 chr9 68008948 68009328 -49853299 + L1MB3 LINE L1 5803 6183 0 1352 222 103 56 chr9 68010137 68010659 -49851968 - MLT1E LTR MaLR -2 591 45 232 370 25 10 chr9 68011150 68011350 -49851277 - MIR SINE MIR -3 259 57 1580 228 47 104 chr9 68011383 68011861 -49850766 - L1MDa LINE L1 -1442 5098 4681 2128 92 88 0 chr9 68011861 68012145 -49850482 - AluY SINE Alu 0 311 3 1580 228 47 104 chr9 68012145 68012455 -49850172 - L1MDa LINE L1 -1859 4681 4355 387 221 10 10 chr9 68012547 68012651 -49849976 - L1MDa LINE L1 -2191 4349 4246 1677 174 106 29 chr9 68012653 68012993 -49849634 + MER47A DNA MER2_type 1 366 0 4641 225 50 39 chr9 68012993 68014222 -49848405 - L1MDa LINE L1 -2296 4244 3030 811 264 135 28 chr9 68014222 68014548 -49848079 + MLT1A1 LTR MaLR 3 363 -2 4641 225 50 39 chr9 68014548 68014747 -49847880 - L1MDa LINE L1 -3510 3030 2835 2120 139 0 0 chr9 68014747 68015048 -49847579 - AluSq SINE Alu -12 301 1 4641 225 50 39 chr9 68015048 68016224 -49846403 - L1MDa LINE L1 -3705 2835 1611 1966 232 58 24 chr9 68016229 68017197 -49845430 - L1MDa LINE L1 -5047 1493 18 22 35 0 0 chr9 68017625 68017654 -49844973 + AT_rich Low_complexity Low_complexity 1 29 0 2208 144 21 8 chr9 68017827 68018201 -49844426 - MLT1B LTR MaLR -11 379 1 279 220 68 51 chr9 68018809 68018927 -49843700 + L2 LINE L2 3139 3258 -14 478 358 5 5 chr9 68019505 68019709 -49842918 - MIR SINE MIR -10 252 49 2340 107 16 40 chr9 68020165 68020538 -49842089 + THE1B LTR MaLR 1 364 0 254 295 56 68 chr9 68020658 68020892 -49841735 + L2 LINE L2 2830 3060 -212 1999 163 17 3 chr9 68021638 68021993 -49840634 - MER47A DNA MER2_type -6 360 1 267 254 0 0 chr9 68022440 68022499 -49840128 + (CA)n Simple_repeat Simple_repeat 1 59 0 2118 149 103 5 chr9 68022711 68023101 -49839526 - MSTA LTR MaLR 0 428 1 213 39 0 0 chr9 68023224 68023250 -49839377 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 1133 231 121 19 chr9 68023785 68024205 -49838422 + MLT1C LTR MaLR 5 467 0 250 331 33 16 chr9 68025705 68025826 -49836801 + MIR SINE MIR 61 183 -79 34 55 0 0 chr9 68026329 68026384 -49836243 + AT_rich Low_complexity Low_complexity 1 55 0 2128 211 77 25 chr9 68026888 68027418 -49835209 + MER74A LTR ERVL 1 558 0 330 217 77 84 chr9 68028412 68028555 -49834072 - MLT1J LTR MaLR -139 372 231 447 298 205 0 chr9 68028853 68029058 -49833569 - MIR SINE MIR 0 262 16 1223 218 91 70 chr9 68029068 68029485 -49833142 + MER63B DNA MER1_type 11 436 0 1609 174 0 14 chr9 68030181 68030500 -49832127 - AluJb SINE Alu 0 315 1 398 91 197 0 chr9 68030912 68030978 -49831649 - MADE1 DNA Mariner 0 80 2 188 354 20 10 chr9 68031064 68031163 -49831464 + L3 LINE CR1 1284 1383 -194 320 153 56 14 chr9 68031342 68031414 -49831213 - LTR16C LTR ERVL -8 483 409 328 273 140 70 chr9 68031881 68031897 -49830730 + HAL1 LINE L1 887 900 -1607 2250 125 6 0 chr9 68031897 68032208 -49830419 + AluSq SINE Alu 1 313 0 328 273 140 70 chr9 68032208 68032964 -49829663 + HAL1 LINE L1 900 1713 -794 721 284 8 27 chr9 68033446 68033707 -49828920 - L1ME1 LINE L1 -5 6161 5906 1207 202 9 105 chr9 68034124 68034456 -49828171 + AluJo SINE Alu 1 300 -2 1308 252 68 23 chr9 68034646 68035086 -49827541 - MLT1G LTR MaLR -1 589 130 1394 220 38 57 chr9 68035156 68035528 -49827099 - MLT1A2 LTR MaLR -9 365 1 1688 121 57 4 chr9 68035621 68035869 -49826758 - AluSg1 SINE Alu -12 297 37 2480 149 47 0 chr9 68035888 68036297 -49826330 - MSTC LTR MaLR 0 428 1 2347 75 0 10 chr9 68037550 68037844 -49824783 + AluSc SINE Alu 1 291 -18 1088 232 28 6 chr9 68038373 68038690 -49823937 + MER33 DNA MER1_type 1 314 -10 2216 111 0 23 chr9 68038810 68039117 -49823510 + AluSg SINE Alu 1 300 -10 229 279 0 0 chr9 68039568 68039636 -49822991 + L1MCa LINE L1 899 966 -5460 483 307 74 60 chr9 68040210 68040640 -49821987 - L1M4 LINE L1 -2102 4044 3609 523 259 57 60 chr9 68040942 68041224 -49821403 - HsTC2 DNA Tc2 -13 1885 1605 2176 114 23 3 chr9 68042106 68042412 -49820215 + AluSq SINE Alu 1 312 -1 1552 205 3 24 chr9 68043173 68043496 -49819131 - AluJo SINE Alu 0 317 1 2993 131 4 7 chr9 68045440 68045905 -49816722 + MER4C LTR ERV1 1 464 -1 293 293 150 7 chr9 68047458 68047598 -49815029 - L1ME1 LINE L1 -2247 5561 5402 338 225 11 22 chr9 68047793 68047882 -49814745 - Cheshire DNA MER1_type -1489 931 844 * 2055 223 101 26 chr9 68047876 68048490 -49814137 - Cheshire DNA MER1_type -1760 660 1 205 342 42 25 chr9 68048581 68048701 -49813926 - L2 LINE L2 0 3272 3151 2066 67 56 0 chr9 68049242 68049532 -49813095 - AluSx SINE Alu 0 306 2 1952 167 0 0 chr9 68051400 68051712 -49810915 + AluSx SINE Alu 1 312 0 722 216 17 0 chr9 68051712 68051954 -49810673 + GA-rich Low_complexity Low_complexity 1 246 0 246 304 82 38 chr9 68052169 68052327 -49810300 - MIR3 SINE MIR -3 205 41 2058 132 0 3 chr9 68052448 68052751 -49809876 - AluY SINE Alu -9 302 1 4369 203 117 98 chr9 68053488 68054105 -49808522 - L1MD3 LINE L1 0 7995 7391 301 286 0 0 chr9 68054105 68054182 -49808445 - MLT1F1 LTR MaLR -490 77 1 4369 203 117 98 chr9 68054182 68055088 -49807539 - L1MD3 LINE L1 -604 7391 6365 310 313 61 35 chr9 68055649 68055718 -49806909 - MER5B DNA MER1_type -56 122 47 3256 146 5 50 chr9 68055718 68056264 -49806363 - L1MB3 LINE L1 -7 6176 5658 2113 105 7 17 chr9 68056264 68056559 -49806068 + AluSq SINE Alu 1 292 -21 3256 146 5 50 chr9 68056559 68056610 -49806017 - L1MB3 LINE L1 -525 5658 5606 310 313 61 35 chr9 68056610 68056655 -49805972 - MER5B DNA MER1_type -131 47 5 242 241 0 0 chr9 68057178 68057232 -49805395 + A-rich Low_complexity Low_complexity 1 54 0 192 40 0 0 chr9 68058234 68058259 -49804368 + (CA)n Simple_repeat Simple_repeat 1 25 0 232 242 242 30 chr9 68058715 68058814 -49803813 + MER112 DNA MER1_type 15 134 -126 249 250 0 0 chr9 68058920 68058976 -49803651 + MER112 DNA MER1_type 193 248 -12 195 282 39 13 chr9 68059016 68059094 -49803533 - MIR SINE MIR -70 192 113 468 222 117 29 chr9 68060049 68060220 -49802407 - MER5A DNA MER1_type 0 189 4 184 259 49 25 chr9 68062500 68062581 -49800046 - MIR SINE MIR -70 192 110 351 133 39 67 chr9 68063395 68063575 -49799052 + (CACAC)n Simple_repeat Simple_repeat 1 175 0 292 121 35 64 chr9 68063645 68063818 -49798809 + (CACAC)n Simple_repeat Simple_repeat 3 170 0 208 265 43 26 chr9 68063839 68063956 -49798671 + (CATA)n Simple_repeat Simple_repeat 3 121 0 294 137 48 42 chr9 68063958 68064126 -49798501 + (CA)n Simple_repeat Simple_repeat 1 169 0 1170 94 76 0 chr9 68064240 68064411 -49798216 - MER30 DNA MER1_type -46 184 1 204 366 0 0 chr9 68064591 68064662 -49797965 + (TG)n Simple_repeat Simple_repeat 1 71 0 221 281 52 42 chr9 68064959 68065055 -49797572 + MER5B DNA MER1_type 79 175 -3 1125 265 27 12 chr9 68065065 68065393 -49797234 - MER58B DNA MER1_type 0 341 9 2408 77 0 13 chr9 68066131 68066442 -49796185 - AluY SINE Alu -4 307 1 22 35 0 0 chr9 68066673 68066702 -49795925 + AT_rich Low_complexity Low_complexity 1 29 0 331 252 79 24 chr9 68067342 68067469 -49795158 - MER5B DNA MER1_type -4 174 41 323 221 29 0 chr9 68067583 68067651 -49794976 + MLT1D LTR MaLR 1 70 -435 1583 180 27 17 chr9 68067651 68067946 -49794681 + MLT1A1 LTR MaLR 1 298 -67 405 0 0 0 chr9 68067947 68067992 -49794635 + (TG)n Simple_repeat Simple_repeat 2 46 0 453 143 0 0 chr9 68067993 68068063 -49794564 - AluSx SINE Alu -31 281 212 1606 109 0 0 chr9 68068100 68068310 -49794317 - AluSx SINE Alu -102 210 1 2088 174 87 8 chr9 68068379 68068781 -49793846 + MLT1D LTR MaLR 72 505 0 1021 275 44 43 chr9 68068853 68069070 -49793557 - L1M4c LINE L1 -4214 2170 1955 2175 139 0 3 chr9 68069070 68069379 -49793248 + AluSx SINE Alu 1 308 -4 1021 275 44 43 chr9 68069379 68069750 -49792877 - L1M4c LINE L1 -4429 1955 1484 2568 60 3 0 chr9 68071221 68071522 -49791105 + AluY SINE Alu 1 302 -9 345 172 17 0 chr9 68072725 68072783 -49789844 - MER74A LTR ERVL -392 166 108 1953 229 39 28 chr9 68073295 68073792 -49788835 - MER74A LTR ERVL 0 558 53 1988 145 57 31 chr9 68073792 68074178 -49788449 - MSTD LTR MaLR 0 396 1 1953 229 39 28 chr9 68074178 68074221 -49788406 - MER74A LTR ERVL -505 53 12 571 236 160 42 chr9 68074503 68074740 -49787887 + LTR16C LTR ERVL 221 485 -6 234 354 72 53 chr9 68074755 68075074 -49787553 + L2 LINE L2 2948 3272 0 1409 197 38 49 chr9 68075386 68075751 -49786876 + MLT1A1 LTR MaLR 1 361 -4 23 33 0 0 chr9 68076148 68076178 -49786449 + AT_rich Low_complexity Low_complexity 1 30 0 225 0 0 0 chr9 68079223 68079248 -49783379 + (ATTG)n Simple_repeat Simple_repeat 2 26 0 1352 226 4 0 chr9 68079277 68079538 -49783089 + Tigger7 DNA MER2_type 6 267 -2220 438 235 0 0 chr9 68079537 68079555 -49783072 + Tigger7 DNA MER2_type 2394 2411 -80 * 360 64 0 0 chr9 68079555 68079602 -49783025 + (CA)n Simple_repeat Simple_repeat 2 48 0 438 235 0 0 chr9 68079602 68079681 -49782946 + Tigger7 DNA MER2_type 2410 2491 0 1897 318 73 31 chr9 68080692 68081696 -49780931 + L2 LINE L2 311 1356 -1958 892 186 162 66 chr9 68081696 68082029 -49780598 + MLT1A1 LTR MaLR 1 365 0 854 299 55 32 chr9 68082239 68082587 -49780040 + L2 LINE L2 1824 2179 -1135 992 293 65 59 chr9 68082922 68083397 -49779230 + L2 LINE L2 2232 2709 -605 557 241 122 34 chr9 68083413 68083640 -49778987 - L1ME LINE L1 -534 5866 5660 2412 68 0 0 chr9 68083640 68083935 -49778692 - AluY SINE Alu -16 295 1 557 241 122 34 chr9 68083935 68084106 -49778521 - L1ME LINE L1 -740 5660 5433 1120 249 58 6 chr9 68084130 68084475 -49778152 + L1ME3 LINE L1 5623 5985 -177 1007 312 91 34 chr9 68084571 68085093 -49777534 + L2 LINE L2 2761 3313 0 306 299 102 12 chr9 68085113 68085367 -49777260 - L1ME LINE L1 -3194 3188 2912 415 293 129 23 chr9 68085509 68085765 -49776862 - L1ME LINE L1 -3603 2779 2497 2121 99 24 10 chr9 68085765 68086059 -49776568 + AluY SINE Alu 1 298 -13 22 0 0 0 chr9 68086158 68086180 -49776447 + AT_rich Low_complexity Low_complexity 1 22 0 702 120 0 0 chr9 68086346 68086446 -49776181 - AluSc SINE Alu -52 257 158 981 235 21 8 chr9 68086553 68086791 -49775836 - MLT1D LTR MaLR 0 505 265 9463 176 56 42 chr9 68086791 68087267 -49775360 - L1ME LINE L1 -4083 2301 1833 2307 103 0 0 chr9 68087267 68087568 -49775059 - AluY SINE Alu -10 301 1 9463 176 56 42 chr9 68087568 68087738 -49774889 - L1ME LINE L1 -4551 1833 1667 2117 145 0 0 chr9 68087738 68088042 -49774585 - AluSx SINE Alu -8 304 1 9463 176 56 42 chr9 68088042 68088652 -49773975 - L1ME LINE L1 -4717 1667 1067 2798 6 0 25 chr9 68088652 68088970 -49773657 - AluYa5 SINE Alu -1 310 1 9463 176 56 42 chr9 68088970 68089974 -49772653 - L1ME LINE L1 -5317 1067 8 180 0 0 0 chr9 68090042 68090062 -49772565 + (CA)n Simple_repeat Simple_repeat 1 20 0 231 292 0 0 chr9 68090765 68090830 -49771797 - HAL1 LINE L1 -854 1653 1589 337 271 174 14 chr9 68091472 68091616 -49771011 - HAL1 LINE L1 -914 1593 1427 236 29 0 29 chr9 68091805 68091839 -49770788 + (TCCC)n Simple_repeat Simple_repeat 4 36 0 567 43 0 0 chr9 68091842 68091912 -49770715 + (TTTC)n Simple_repeat Simple_repeat 1 70 0 2221 92 0 4 chr9 68091916 68092197 -49770430 - AluY SINE Alu -31 280 1 198 0 0 0 chr9 68095093 68095115 -49767512 + (TTA)n Simple_repeat Simple_repeat 3 24 0 2876 48 3 3 chr9 68095115 68095471 -49767156 - L1PA7 LINE L1 -18 6136 5781 446 259 141 11 chr9 68095556 68095700 -49766927 + MER3 DNA MER1_type 1 176 -33 1827 192 0 0 chr9 68095700 68096002 -49766625 + AluJb SINE Alu 11 312 0 446 259 141 11 chr9 68096002 68096042 -49766585 + MER3 DNA MER1_type 176 209 0 630 329 173 36 chr9 68096234 68097695 -49764932 + L2 LINE L2 86 1746 -1568 200 313 116 14 chr9 68097695 68097842 -49764785 + L2 LINE L2 2289 2450 -864 214 290 20 40 chr9 68097931 68098031 -49764596 + MIR SINE MIR 41 138 -124 2282 114 0 0 chr9 68098471 68098779 -49763848 - AluSg SINE Alu -2 308 1 387 186 93 8 chr9 68098999 68099117 -49763510 - LTR16C LTR ERVL -2 489 362 2558 58 0 0 chr9 68099143 68099454 -49763173 - AluY SINE Alu 0 311 1 192 351 23 69 chr9 68099769 68099900 -49762727 + MIR SINE MIR 24 148 -114 2244 276 85 26 chr9 68099957 68101848 -49760779 - L1ME LINE L1 -512 5650 3651 254 303 46 40 chr9 68101878 68102201 -49760426 - L1ME LINE L1 -2566 3580 3256 304 102 20 0 chr9 68102266 68102315 -49760312 - U5 snRNA snRNA -64 52 3 394 289 105 4 chr9 68102325 68102564 -49760063 - L1ME LINE L1 -3009 3137 2875 252 228 53 35 chr9 68103127 68103241 -49759386 - L1ME LINE L1 -3272 2874 2759 1783 196 25 20 chr9 68103755 68104283 -49758344 - MER45B DNA AcHobo -541 1040 445 2405 88 0 0 chr9 68104283 68104589 -49758038 - AluSp SINE Alu -7 306 1 1783 196 25 20 chr9 68104589 68104703 -49757924 - MER45B DNA AcHobo -1136 445 333 252 300 195 8 chr9 68105765 68106015 -49756612 - L2 LINE L2 -274 2998 2704 183 156 0 0 chr9 68106435 68106467 -49756160 + C-rich Low_complexity Low_complexity 5 36 0 21 36 0 0 chr9 68106901 68106929 -49755698 + AT_rich Low_complexity Low_complexity 1 28 0 343 284 96 29 chr9 68106977 68107185 -49755442 - L1ME LINE L1 -402 5719 5498 1134 249 114 37 chr9 68108304 68108841 -49753786 - L1ME1 LINE L1 -5 6230 5653 976 198 21 102 chr9 68108849 68109222 -49753405 - L1MA9 LINE L1 -38 6274 5932 1306 234 31 49 chr9 68109279 68109995 -49752632 - L1ME1 LINE L1 -566 5669 4962 404 211 32 8 chr9 68110009 68110132 -49752495 - L1ME1 LINE L1 -1372 4843 4718 * 623 206 57 52 chr9 68110128 68110376 -49752251 - L1ME1 LINE L1 -1818 4397 4149 481 224 81 19 chr9 68110386 68110547 -49752080 + LOR1b LTR ERV1 1 171 -290 369 0 0 0 chr9 68110791 68110832 -49751795 + (TTCC)n Simple_repeat Simple_repeat 4 44 0 1582 166 71 20 chr9 68110832 68111128 -49751499 - AluSq SINE Alu 0 313 3 506 254 153 4 chr9 68111133 68111408 -49751219 - L1ME1 LINE L1 -5253 1143 828 1877 198 48 27 chr9 68111438 68111917 -49750710 - L1MC2 LINE L1 -11 6333 5845 5341 185 35 24 chr9 68111921 68113597 -49749030 - L1MC1 LINE L1 0 6333 4640 30 97 0 0 chr9 68113599 68113692 -49748935 + AT_rich Low_complexity Low_complexity 1 93 0 743 271 7 7 chr9 68113948 68114225 -49748402 - L1MC1 LINE L1 -1575 4571 4295 41099 30 21 1 chr9 68114243 68120264 -49742363 + L1HS LINE L1 2 6145 -10 228 35 0 0 chr9 68120264 68120293 -49742334 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 822 254 9 0 chr9 68120319 68120536 -49742091 - L1MC1 LINE L1 -1888 4258 4040 225 268 12 12 chr9 68120700 68120782 -49741845 + (TATATG)n Simple_repeat Simple_repeat 2 83 0 384 274 229 14 chr9 68120803 68121026 -49741601 - L2 LINE L2 -1321 1993 1723 233 275 58 0 chr9 68121039 68121108 -49741519 - L2 LINE L2 -1894 1420 1348 322 340 107 19 chr9 68121258 68121417 -49741210 + MER5A DNA MER1_type 14 186 -3 24 32 0 0 chr9 68123764 68123795 -49738832 + AT_rich Low_complexity Low_complexity 1 31 0 410 53 18 0 chr9 68124099 68124156 -49738471 + (TCTA)n Simple_repeat Simple_repeat 2 59 0 1121 136 133 14 chr9 68124303 68124582 -49738045 + L1MA8 LINE L1 5979 6290 -1 193 346 65 9 chr9 68125354 68125461 -49737166 - L2 LINE L2 -20 3252 3140 2439 127 114 28 chr9 68125502 68125946 -49736681 + LTR12 LTR ERV1 1 469 -245 1706 138 4 4 chr9 68125946 68126215 -49736412 + AluSx SINE Alu 31 299 -13 2439 127 114 28 chr9 68126215 68126229 -49736398 + LTR12 LTR ERV1 469 480 -234 598 245 23 35 chr9 68126263 68126473 -49736154 - MIR SINE MIR -33 229 22 280 146 73 7 chr9 68126958 68127095 -49735532 + (CA)n Simple_repeat Simple_repeat 2 147 0 465 123 72 14 chr9 68127117 68127397 -49735230 + (CA)n Simple_repeat Simple_repeat 1 296 0 313 174 35 29 chr9 68127410 68127582 -49735045 + (CA)n Simple_repeat Simple_repeat 1 173 0 330 205 0 0 chr9 68127802 68127880 -49734747 + GA-rich Low_complexity Low_complexity 4 81 0 673 264 36 23 chr9 68128296 68128516 -49734111 - L1ME1 LINE L1 -35 6131 5909 932 229 25 25 chr9 68128543 68128827 -49733800 - L1MDb LINE L1 -3550 2856 2573 2399 90 0 3 chr9 68128843 68129155 -49733472 - AluY SINE Alu 0 311 1 2264 96 7 13 chr9 68129161 68129464 -49733163 - AluSq SINE Alu -12 301 1 775 188 34 23 chr9 68129488 68129664 -49732963 - L1MC2 LINE L1 -13 6331 6154 433 241 45 38 chr9 68129666 68129799 -49732828 - L1MC3 LINE L1 -180 7605 7472 440 216 45 0 chr9 68129836 68129947 -49732680 - L1MD1 LINE L1 -1 6241 6126 212 59 29 0 chr9 68130117 68130151 -49732476 + (TG)n Simple_repeat Simple_repeat 1 35 0 739 237 65 56 chr9 68130168 68130400 -49732227 - L1MD2 LINE L1 -150 6209 5976 2664 223 74 38 chr9 68130400 68130880 -49731747 - L1MDb LINE L1 -4542 1864 1403 3451 169 44 103 chr9 68130880 68131895 -49730732 + LTR5 LTR ERVK 1 955 -14 2664 223 74 38 chr9 68131895 68132490 -49730137 - L1MDb LINE L1 -5003 1403 792 1960 190 37 26 chr9 68132943 68133400 -49729227 - L1MB2 LINE L1 -2 6169 5708 356 304 65 20 chr9 68134501 68134702 -49727925 - HAL1 LINE L1 0 2507 2298 24 67 0 0 chr9 68134745 68134790 -49727837 + AT_rich Low_complexity Low_complexity 1 45 0 919 154 7 0 chr9 68134824 68134973 -49727654 - L1MB3 LINE L1 -14 6169 6020 21 0 0 0 chr9 68134978 68134999 -49727628 + AT_rich Low_complexity Low_complexity 1 21 0 271 217 65 54 chr9 68135221 68135313 -49727314 - HAL1 LINE L1 -271 2236 2144 379 281 116 16 chr9 68135437 68135640 -49726987 + MLT1F LTR MaLR 18 252 -303 660 229 82 57 chr9 68135716 68136031 -49726596 + MLT1F LTR MaLR 212 534 -8 634 250 98 29 chr9 68136069 68136313 -49726314 - HAL1 LINE L1 -513 1994 1734 396 261 47 93 chr9 68136308 68136565 -49726062 - HAL1 LINE L1 -1487 1020 776 * 24 53 0 0 chr9 68137465 68137503 -49725124 + AT_rich Low_complexity Low_complexity 1 38 0 2208 108 0 10 chr9 68138144 68138449 -49724178 - AluSx SINE Alu -10 302 1 2417 103 0 0 chr9 68138809 68139121 -49723506 - AluSx SINE Alu 0 312 1 2271 104 0 10 chr9 68139453 68139762 -49722865 + AluY SINE Alu 1 306 -5 2262 181 45 17 chr9 68141142 68141562 -49721065 - MSTB1 LTR MaLR 0 432 1 183 80 0 0 chr9 68141951 68141976 -49720651 + (TGG)n Simple_repeat Simple_repeat 3 27 0 209 266 227 31 chr9 68142273 68142401 -49720226 - MER5A DNA MER1_type 0 189 37 787 212 0 0 chr9 68143875 68144007 -49718620 + FLAM_A SINE Alu 1 132 -1 371 215 0 13 chr9 68144024 68144095 -49718532 + AluJ/FRAM SINE Alu 217 288 -14 390 21 0 0 chr9 68144095 68144142 -49718485 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 3601 116 10 2 chr9 68144992 68145485 -49717142 + LOR1a LTR ERV1 1 497 0 759 191 16 0 chr9 68145929 68146055 -49716572 + MER2 DNA MER2_type 1 128 -217 1021 163 102 0 chr9 68146118 68146314 -49716313 + MER2 DNA MER2_type 129 344 -1 686 187 142 36 chr9 68147571 68147790 -49714837 + ORSL DNA AcHobo 1 242 -33 612 27 0 0 chr9 68147935 68148009 -49714618 + (TC)n Simple_repeat Simple_repeat 1 74 0 303 28 0 0 chr9 68148008 68148044 -49714583 + (CA)n Simple_repeat Simple_repeat 1 36 0 * 554 279 6 6 chr9 68148822 68148839 -49713788 - L1MA10 LINE L1 0 6334 6318 4327 222 56 38 chr9 68148839 68150829 -49711798 - L1ME1 LINE L1 -8 6394 4361 32 0 0 0 chr9 68150853 68150885 -49711742 + AT_rich Low_complexity Low_complexity 1 32 0 1418 147 14 14 chr9 68150886 68151237 -49711390 - L1PB4 LINE L1 0 6156 5769 292 111 0 79 chr9 68151227 68151290 -49711337 - L1P5 LINE L1 -330 5826 5769 * 793 244 26 0 chr9 68151289 68151482 -49711145 - L1PB4 LINE L1 0 6156 5959 1613 243 74 27 chr9 68151515 68152137 -49710490 - L1ME1 LINE L1 -3299 3083 2433 1734 294 64 11 chr9 68152166 68152805 -49709822 + L1MEc LINE L1 45 717 -5679 721 257 47 87 chr9 68152799 68153250 -49709377 + L1MEc LINE L1 1403 1835 -4561 * 2873 225 12 19 chr9 68153277 68153926 -49708701 - L1MD1 LINE L1 -12 6230 5586 1163 189 33 25 chr9 68153926 68154169 -49708458 - MSTB1 LTR MaLR 0 432 188 7551 64 6 0 chr9 68154182 68155663 -49706964 - L1PA8 LINE L1 -7 6165 4681 632 200 58 25 chr9 68155674 68155942 -49706685 - L1ME1 LINE L1 -393 6026 1116 * 1991 222 37 29 chr9 68155936 68156525 -49706102 - L1 LINE L1 -914 5296 4703 716 264 53 17 chr9 68156512 68156811 -49705816 - L1MDa LINE L1 -3290 3250 2941 * 44572 47 1 0 chr9 68156811 68162709 -49699918 + L1PA4 LINE L1 1 5906 -249 1899 246 40 30 chr9 68162708 68163350 -49699277 - L1MDa LINE L1 -4584 1887 1239 * 670 313 14 52 chr9 68163663 68163954 -49698673 - L1MDa LINE L1 -5611 850 571 * 2617 252 92 35 chr9 68163950 68164883 -49697744 - L1M4 LINE L1 -844 5302 4297 1235 246 96 6 chr9 68164883 68165196 -49697431 + MER2 DNA MER2_type 4 344 0 2617 252 92 35 chr9 68165196 68165344 -49697283 - L1M4 LINE L1 -1849 4297 4159 1528 236 29 3 chr9 68165337 68165685 -49696942 - L1MDa LINE L1 -6143 397 41 * 2211 119 0 3 chr9 68165942 68166244 -49696383 + AluSc SINE Alu 1 301 -8 339 228 110 44 chr9 68166543 68166679 -49695948 + MLT1J LTR MaLR 224 368 -143 2292 109 0 0 chr9 68167025 68167329 -49695298 + AluSg SINE Alu 1 304 -6 1670 149 28 49 chr9 68168157 68168296 -49694331 + AluSx SINE Alu 1 141 -174 2277 123 0 0 chr9 68168296 68168606 -49694021 + AluSx SINE Alu 3 312 0 1670 149 28 49 chr9 68168606 68168787 -49693840 + AluSx SINE Alu 141 315 0 2403 64 7 3 chr9 68169861 68170157 -49692470 + AluY SINE Alu 1 297 -14 2113 108 0 54 chr9 68170926 68171241 -49691386 - AluSx SINE Alu -14 298 1 678 238 14 0 chr9 68171290 68171437 -49691190 + MLT1J2 LTR MaLR 1 149 -301 2441 70 0 7 chr9 68171510 68171810 -49690817 + AluY SINE Alu 1 298 -13 2327 100 0 3 chr9 68171907 68172216 -49690411 + AluSg SINE Alu 1 308 -2 246 274 0 14 chr9 68172233 68172306 -49690321 + MLT1I LTR MaLR 323 394 -15 6187 122 36 25 chr9 68172340 68173817 -49688810 - L1PA14 LINE L1 -1 6160 4702 1615 138 93 28 chr9 68173817 68174106 -49688521 - AluSx SINE Alu 0 312 5 6187 122 36 25 chr9 68174106 68174276 -49688351 - L1PA14 LINE L1 -1459 4702 4491 2107 134 7 0 chr9 68174276 68174581 -49688046 - AluSg SINE Alu -3 307 1 6187 122 36 25 chr9 68174581 68174696 -49687931 - L1PA14 LINE L1 -1670 4491 4379 661 267 4 6 chr9 68174734 68174960 -49687667 + L1MA4 LINE L1 5938 6162 -138 2076 127 3 3 chr9 68175007 68175315 -49687312 - AluSp SINE Alu -5 308 1 3023 231 27 39 chr9 68175357 68176349 -49686278 + L1MB3 LINE L1 4818 5820 -363 2045 111 4 4 chr9 68176349 68176628 -49685999 + AluSx SINE Alu 1 279 -33 203 0 37 0 chr9 68176634 68176661 -49685966 + (CAAAA)n Simple_repeat Simple_repeat 5 32 0 3023 231 27 39 chr9 68176661 68176762 -49685865 + L1MB3 LINE L1 5825 5926 -257 1967 158 0 0 chr9 68176762 68177066 -49685561 + AluSx SINE Alu 1 304 -8 3023 231 27 39 chr9 68177066 68177316 -49685311 + L1MB3 LINE L1 5926 6153 -30 212 158 0 0 chr9 68178093 68178131 -49684496 + (ATG)n Simple_repeat Simple_repeat 3 40 0 253 332 56 23 chr9 68178150 68178364 -49684263 - MIR SINE MIR -10 252 32 2172 109 0 6 chr9 68178763 68179075 -49683552 + AluSg SINE Alu 1 310 0 194 310 44 26 chr9 68179470 68179583 -49683044 + L2 LINE L2 3158 3272 0 2111 106 7 7 chr9 68179648 68179951 -49682676 - AluSq SINE Alu -10 303 1 1083 229 255 25 chr9 68181648 68183623 -49679004 - SATR1 Satellite Satellite -1 2430 1 615 251 329 3 chr9 68183655 68183989 -49678638 - SATR1 Satellite Satellite -4 466 24 1670 218 100 38 chr9 68184201 68185479 -49677148 - SATR1 Satellite Satellite 0 1357 1 256 230 18 48 chr9 68185573 68185738 -49676889 + (TTA)n Simple_repeat Simple_repeat 2 161 0 31 68 0 0 chr9 68185786 68185845 -49676782 + AT_rich Low_complexity Low_complexity 1 59 0 2162 191 103 16 chr9 68185845 68187910 -49674717 - SATR1 Satellite Satellite -1 2244 1 23 0 0 0 chr9 68188003 68188026 -49674601 + AT_rich Low_complexity Low_complexity 1 23 0 356 180 7 58 chr9 68188069 68188208 -49674419 + (TTA)n Simple_repeat Simple_repeat 1 132 0 29668 90 11 12 chr9 68188262 68192324 -49670303 + HERVE LTR ERV1 1108 5164 -2649 2299 171 113 6 chr9 68192325 68193794 -49668833 - SATR1 Satellite Satellite 0 1626 1 2034 185 75 56 chr9 68193825 68194617 -49668010 - SATR1 Satellite Satellite -2 807 1 1294 205 222 37 chr9 68194654 68195894 -49666733 - SATR1 Satellite Satellite -1 1470 1 1352 119 36 14 chr9 68195896 68196115 -49666512 - AluSq SINE Alu -89 224 1 730 242 40 0 chr9 68198013 68198211 -49664416 + MER6B DNA MER2_type 5 210 0 328 235 35 0 chr9 68198314 68198399 -49664228 - MER5B DNA MER1_type -4 174 87 2069 122 0 49 chr9 68198625 68198954 -49663673 - AluSp SINE Alu 0 313 1 332 206 123 65 chr9 68198954 68199101 -49663526 - HsTC2 DNA Tc2 -112 1786 1628 825 175 11 33 chr9 68199143 68199326 -49663301 + L1MA4 LINE L1 5771 5949 -351 1631 158 0 4 chr9 68199327 68199587 -49663040 + AluSx SINE Alu 1 259 -53 7375 173 25 10 chr9 68199603 68200999 -49661628 - L1P LINE L1 -1774 4372 2956 5677 126 45 10 chr9 68201464 68202336 -49660291 + MER49 LTR ERV1 1 902 -21 252 0 0 0 chr9 68202385 68202413 -49660214 + (T)n Simple_repeat Simple_repeat 1 28 0 2344 67 0 38 chr9 68202497 68202812 -49659815 + AluY SINE Alu 1 303 -8 2243 131 0 0 chr9 68204013 68204325 -49658302 - AluSx SINE Alu 0 312 1 721 124 0 9 chr9 68206991 68207096 -49655531 + AluSq/x SINE Alu 2 105 -208 315 320 67 26 chr9 68207198 68207392 -49655235 - L1M3d LINE L1 -5014 1289 1088 454 306 17 78 chr9 68207708 68208002 -49654625 - L1M3d LINE L1 -5610 693 418 383 316 73 38 chr9 68207998 68208393 -49654234 - L1M4 LINE L1 -839 5307 4899 * 23 0 0 0 chr9 68208582 68208605 -49654022 + AT_rich Low_complexity Low_complexity 1 23 0 288 197 7 58 chr9 68208648 68208785 -49653842 + (TTA)n Simple_repeat Simple_repeat 3 132 0 6921 125 4 7 chr9 68208841 68209894 -49652733 + HERVE LTR ERV1 1108 2157 -5656 883 239 55 55 chr9 68211208 68211572 -49651055 + MLT1A1 LTR MaLR 1 387 -9 23 33 0 0 chr9 68211975 68212005 -49650622 + AT_rich Low_complexity Low_complexity 1 30 0 633 314 98 38 chr9 68212525 68213014 -49649613 + L2 LINE L2 2795 3313 0 231 324 57 0 chr9 68213183 68213288 -49649339 - L1MDa LINE L1 -3360 3180 3070 1462 234 121 74 chr9 68213551 68214513 -49648114 - SATR1 Satellite Satellite -2 1008 1 1058 203 242 26 chr9 68214526 68214906 -49647721 - SATR1 Satellite Satellite -2 468 7 929 286 48 6 chr9 68215037 68215348 -49647279 - L1M3d LINE L1 -6053 331 8 863 335 81 37 chr9 68217606 68218605 -49644022 + L2 LINE L2 311 1353 -1961 582 221 134 36 chr9 68218609 68218916 -49643711 + MLT1A1 LTR MaLR 1 339 -26 21 0 0 0 chr9 68219045 68219066 -49643561 + AT_rich Low_complexity Low_complexity 1 21 0 301 351 24 72 chr9 68219898 68220149 -49642478 + HAL1 LINE L1 776 1014 -1493 416 287 102 23 chr9 68220150 68220366 -49642261 + HAL1 LINE L1 1734 1966 -541 247 259 37 12 chr9 68220432 68220513 -49642114 - MLT1F LTR MaLR -8 534 452 1241 225 0 3 chr9 68221019 68221303 -49641324 - AluSc SINE Alu -12 297 15 1016 290 24 6 chr9 68221583 68221924 -49640703 + L1MDa LINE L1 51 397 -6143 239 306 90 8 chr9 68221917 68222051 -49640576 + L1M4 LINE L1 4159 4303 -1843 * 878 293 95 0 chr9 68222066 68222370 -49640257 - MER2 DNA MER2_type 0 345 13 1048 249 74 28 chr9 68222665 68223058 -49639569 - L1MDa LINE L1 -4633 1907 1497 2534 202 36 58 chr9 68223058 68223845 -49638782 + LTR5 LTR ERVK 1 769 -200 611 175 84 66 chr9 68223911 68224077 -49638550 + LTR5 LTR ERVK 787 955 -14 219 277 0 0 chr9 68224179 68224226 -49638401 + G-rich Low_complexity Low_complexity 5 51 0 2280 99 0 3 chr9 68226132 68226425 -49636202 - AluSx SINE Alu -20 292 1 368 308 142 19 chr9 68227187 68227398 -49635229 + L2 LINE L2 2808 3044 -269 22 0 0 0 chr9 68227932 68227954 -49634673 + AT_rich Low_complexity Low_complexity 1 22 0 257 316 127 36 chr9 68228270 68228415 -49634212 - L2 LINE L2 0 3313 3183 426 114 0 0 chr9 68228415 68228485 -49634142 + (CA)n Simple_repeat Simple_repeat 2 71 0 257 316 127 36 chr9 68228485 68228614 -49634013 - L2 LINE L2 -130 3183 3014 * 1565 305 48 45 chr9 68228588 68229425 -49633202 - L2 LINE L2 -1045 2269 1431 564 320 152 46 chr9 68229425 68229985 -49632642 - L2 LINE L2 -2055 1259 641 2271 105 3 3 chr9 68229987 68230291 -49632336 + AluSg SINE Alu 3 306 -4 298 253 47 27 chr9 68230727 68230877 -49631750 - L1ME3A LINE L1 -251 5919 5767 295 213 101 144 chr9 68230860 68231565 -49631062 - L1M1 LINE L1 -694 5468 4828 * 1721 232 88 32 chr9 68231673 68232089 -49630538 - L1ME3A LINE L1 -1316 4830 4360 183 80 0 0 chr9 68232089 68232114 -49630513 + (TTG)n Simple_repeat Simple_repeat 3 27 0 1721 232 88 32 chr9 68232114 68232378 -49630249 - L1ME3A LINE L1 -1786 4360 4112 2473 126 43 94 chr9 68232381 68233018 -49629609 + MER4B LTR ERV1 4 778 -1 406 247 66 18 chr9 68233042 68233208 -49629419 - L1ME3A LINE L1 -2056 4090 3917 1156 168 0 0 chr9 68233314 68233492 -49629135 - AluSq SINE Alu -19 294 117 923 154 0 0 chr9 68233492 68233628 -49628999 + AluSq/x SINE Alu 1 136 -177 496 241 26 47 chr9 68233680 68233871 -49628756 + LTR37B LTR ERV1 276 462 -6 2012 139 35 35 chr9 68234178 68234553 -49628074 + THE1C LTR MaLR 1 375 0 598 271 107 32 chr9 68234665 68234852 -49627775 - HAL1 LINE L1 -967 1540 1368 1831 179 7 0 chr9 68234852 68235159 -49627468 - AluJb SINE Alu -3 309 1 598 271 107 32 chr9 68235159 68235627 -49627000 - HAL1 LINE L1 -1139 1368 836 2086 76 0 138 chr9 68235728 68236084 -49626543 - AluSg1 SINE Alu -2 307 1 312 237 76 46 chr9 68236090 68236221 -49626406 - HAL1 LINE L1 -2268 239 105 2205 103 0 0 chr9 68236551 68236858 -49625769 - AluSg SINE Alu 0 307 1 2107 123 10 0 chr9 68237259 68237551 -49625076 - AluSx SINE Alu -15 297 3 216 293 40 0 chr9 68237861 68237936 -49624691 - MIR SINE MIR -72 190 113 523 290 35 78 chr9 68238205 68238436 -49624191 - L2 LINE L2 -1282 2032 1812 1356 152 34 0 chr9 68238458 68238695 -49623932 + Tigger1 DNA MER2_type 1 245 -2173 2298 94 7 0 chr9 68238794 68239092 -49623535 - AluY SINE Alu -1 310 11 343 321 71 24 chr9 68239804 68239972 -49622655 + MIR SINE MIR 16 191 -71 361 338 26 100 chr9 68240534 68240925 -49621702 - L2 LINE L2 -36 3236 2875 1145 194 239 59 chr9 68241313 68242726 -49619901 + SATR1 Satellite Satellite 1 1667 -20 2415 231 8 20 chr9 68242726 68243332 -49619295 - L1MD1 LINE L1 -58 6184 5586 1066 189 33 25 chr9 68243332 68243575 -49619052 - MSTB1 LTR MaLR 0 432 188 6809 76 0 3 chr9 68243588 68244633 -49617994 - L1PA8 LINE L1 -7 6165 5119 350 323 123 14 chr9 68244806 68245083 -49617544 - L1MD1 LINE L1 -585 5579 5274 2373 70 10 0 chr9 68245147 68245446 -49617181 - AluSx SINE Alu -6 306 5 2167 103 0 3 chr9 68246326 68246628 -49615999 - AluSx SINE Alu 0 301 1 1089 122 0 0 chr9 68247132 68247305 -49615322 - AluSp SINE Alu 0 311 139 1415 170 70 184 chr9 68247871 68248646 -49613981 - LTR8A LTR ERV1 -8 719 34 3145 318 146 21 chr9 68248830 68250552 -49612075 + L2 LINE L2 675 2768 -545 2499 60 0 7 chr9 68250552 68250852 -49611775 - AluY SINE Alu -13 298 1 3145 318 146 21 chr9 68250852 68251403 -49611224 + L2 LINE L2 2768 3249 -64 743 216 36 0 chr9 68252149 68252316 -49610311 + L1MDa LINE L1 30 202 -6338 538 109 22 0 chr9 68252402 68252494 -49610133 + CT-rich Low_complexity Low_complexity 3 96 0 1034 217 94 37 chr9 68252496 68252795 -49609832 + L1MDa LINE L1 202 517 -6023 469 260 18 62 chr9 68252801 68253074 -49609553 + L1M4 LINE L1 4519 4779 -1367 2008 60 7 3 chr9 68253084 68253367 -49609260 - L1P LINE L1 -4114 2032 1749 27 0 0 0 chr9 68253374 68253401 -49609226 + AT_rich Low_complexity Low_complexity 1 27 0 403 231 35 131 chr9 68253408 68253640 -49608987 + L1M4 LINE L1 4786 4982 -1164 201 74 0 0 chr9 68253640 68253667 -49608960 + (CA)n Simple_repeat Simple_repeat 2 28 0 403 231 35 131 chr9 68253667 68253746 -49608881 + L1M4 LINE L1 4982 5067 -1079 955 244 77 45 chr9 68254207 68254559 -49608068 + MLT1A2 LTR MaLR 1 363 -11 1796 179 65 43 chr9 68255190 68255608 -49607019 + MSTB1 LTR MaLR 1 427 -5 421 271 47 21 chr9 68255711 68255947 -49606680 - L1ME2 LINE L1 -213 5951 5710 1218 132 34 0 chr9 68256098 68256302 -49606325 - L1PA15 LINE L1 0 6165 5955 430 287 57 48 chr9 68257372 68257581 -49605046 - L2 LINE L2 -4 3309 3099 351 288 60 11 chr9 68257784 68257968 -49604659 + LTR16B LTR ERVL 185 377 -87 216 0 0 0 chr9 68257976 68258000 -49604627 + (TG)n Simple_repeat Simple_repeat 1 24 0 256 341 32 0 chr9 68259872 68259995 -49602632 - LTR67 LTR ERVL 0 557 431 240 319 14 0 chr9 68260082 68260154 -49602473 - MER5B DNA MER1_type -105 73 1 3608 141 37 41 chr9 68260391 68260705 -49601922 - Tigger3(Golem) DNA MER2_type 0 3028 2714 2398 93 0 6 chr9 68260705 68261017 -49601610 + AluSg SINE Alu 1 310 0 3608 141 37 41 chr9 68261017 68261453 -49601174 - Tigger3(Golem) DNA MER2_type -314 2714 2281 430 257 0 37 chr9 68261450 68261559 -49601068 - Tigger3(Golem) DNA MER2_type -2921 108 4 * 225 65 0 0 chr9 68261586 68261617 -49601010 + (CA)n Simple_repeat Simple_repeat 2 32 0 244 316 20 20 chr9 68261689 68261787 -49600840 - LTR67 LTR ERVL -363 194 97 3912 217 124 33 chr9 68261969 68263994 -49598633 + L1MCa LINE L1 133 2282 -4282 1151 81 243 0 chr9 68263994 68264179 -49598448 - MER30 DNA MER1_type 0 230 1 3912 217 124 33 chr9 68264179 68264534 -49598093 + L1MCa LINE L1 2282 2603 -3961 7662 216 57 28 chr9 68264598 68265014 -49597613 + L1MB2 LINE L1 3045 3447 -3142 2187 142 0 0 chr9 68265014 68265324 -49597303 + AluSx SINE Alu 3 312 0 7662 216 57 28 chr9 68265324 68267686 -49594941 + L1MB2 LINE L1 3447 5955 -634 2042 96 41 4 chr9 68267686 68267985 -49594642 + AluSx SINE Alu 1 309 0 7662 216 57 28 chr9 68267985 68268637 -49593990 + L1MB2 LINE L1 5955 6587 -2 4243 219 46 38 chr9 68268626 68269669 -49592958 + L1MB8 LINE L1 3833 4866 -1312 * 2358 102 0 0 chr9 68269669 68269973 -49592654 - AluSx SINE Alu -8 304 1 4243 219 46 38 chr9 68269973 68271256 -49591371 + L1MB8 LINE L1 4866 6178 0 29 0 0 0 chr9 68271735 68271764 -49590863 + AT_rich Low_complexity Low_complexity 1 29 0 2244 87 7 0 chr9 68271784 68272073 -49590554 - AluSg SINE Alu -19 291 1 488 158 178 5 chr9 68272342 68272539 -49590088 + Charlie5 DNA MER1_type 3 2533 -79 21 36 0 0 chr9 68272539 68272567 -49590060 + AT_rich Low_complexity Low_complexity 1 28 0 247 338 61 47 chr9 68272635 68272848 -49589779 - L2 LINE L2 -84 3229 3014 301 314 70 6 chr9 68273060 68273232 -49589395 - HERVL LTR ERVL -2191 3463 3281 811 285 63 32 chr9 68274010 68274516 -49588111 - L1M4 LINE L1 -1717 4429 3908 3754 170 34 44 chr9 68274521 68275314 -49587313 + LTR1 LTR ERV1 1 785 0 21 71 0 0 chr9 68275697 68275739 -49586888 + AT_rich Low_complexity Low_complexity 1 42 0 229 296 148 9 chr9 68275968 68276076 -49586551 - MER5B DNA MER1_type 0 178 56 1924 212 59 13 chr9 68277327 68277784 -49584843 + MLT2B1 LTR ERVL 1 478 -42 236 250 29 43 chr9 68277943 68277958 -49584669 + A-rich Low_complexity Low_complexity 1 15 -123 2221 116 0 13 chr9 68277958 68278269 -49584358 + AluSg SINE Alu 1 307 -3 236 250 29 43 chr9 68278269 68278393 -49584234 + A-rich Low_complexity Low_complexity 15 138 0 2124 128 7 0 chr9 68278845 68279150 -49583477 - AluSx SINE Alu -5 307 1 3223 185 76 41 chr9 68279418 68280097 -49582530 - L1MB8 LINE L1 -5 6173 5454 205 50 25 25 chr9 68280097 68280137 -49582490 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 3223 185 76 41 chr9 68280137 68280342 -49582285 - L1MB8 LINE L1 -724 5454 5258 708 236 38 0 chr9 68280348 68280560 -49582067 + L1M4 LINE L1 2715 2934 -3212 22 35 0 0 chr9 68280721 68280750 -49581877 + AT_rich Low_complexity Low_complexity 1 29 0 668 179 64 23 chr9 68280754 68280918 -49581709 + MLT1E3 LTR MaLR 382 609 -15 350 336 141 42 chr9 68281131 68281556 -49581071 - L3 LINE CR1 -11 1566 1100 244 214 92 82 chr9 68281761 68281859 -49580768 - L3 LINE CR1 -7 1570 1472 732 318 41 21 chr9 68282744 68283228 -49579399 - L1ME LINE L1 -350 5820 5327 681 192 34 0 chr9 68283289 68283435 -49579192 - MLT1E3 LTR MaLR -15 609 459 497 193 86 27 chr9 68283445 68283632 -49578995 + MER114 LTR ERV 125 322 -326 2370 97 0 25 chr9 68284365 68284686 -49577941 + AluSq SINE Alu 1 313 0 361 307 40 34 chr9 68285802 68285978 -49576649 - L1ME LINE L1 -3005 3141 2965 2486 119 3 0 chr9 68287124 68287503 -49575124 - L1PA8 LINE L1 -2 6170 5791 657 248 47 75 chr9 68289495 68289815 -49572812 + MLT1H1 LTR MaLR 1 276 -279 374 261 101 7 chr9 68289887 68290025 -49572602 + MLT1H1 LTR MaLR 445 595 0 187 282 65 105 chr9 68291092 68291386 -49571241 + L2 LINE L2 238 519 -2795 219 368 32 16 chr9 68291639 68291764 -49570863 - L2 LINE L2 -563 2751 2625 2395 74 6 19 chr9 68291782 68292093 -49570534 - AluSg SINE Alu -3 307 1 453 181 63 31 chr9 68292249 68292376 -49570251 - L1MA9 LINE L1 -2 6310 6180 384 285 56 50 chr9 68293786 68293965 -49568662 + MIR SINE MIR 52 231 -31 393 266 9 9 chr9 68293973 68294086 -49568541 + MLT2F LTR ERVL 7 119 -544 506 217 11 72 chr9 68294089 68294269 -49568358 + MLT1E3 LTR MaLR 39 207 -417 2305 104 3 10 chr9 68294638 68294947 -49567680 - AluSp SINE Alu -6 307 1 203 279 46 0 chr9 68295113 68295183 -49567444 + MIR SINE MIR 45 116 -106 2304 97 3 0 chr9 68296541 68296841 -49565786 + AluY SINE Alu 1 301 -10 307 294 7 56 chr9 68297062 68297205 -49565422 - HAL1 LINE L1 -184 2323 2188 285 75 0 0 chr9 68297721 68297761 -49564866 + (TCTCTG)n Simple_repeat Simple_repeat 5 44 0 1710 176 3 10 chr9 68297998 68298288 -49564339 + AluJo SINE Alu 1 288 -24 1224 151 0 0 chr9 68298308 68298486 -49564141 - AluSp SINE Alu -19 294 117 1059 103 0 0 chr9 68298486 68298622 -49564005 + AluSq/x SINE Alu 1 136 -177 496 241 26 47 chr9 68298674 68298865 -49563762 + LTR37B LTR ERV1 276 462 -6 2012 139 35 35 chr9 68299172 68299547 -49563080 + THE1C LTR MaLR 1 375 0 309 209 52 52 chr9 68299659 68299793 -49562834 - HAL1 LINE L1 -967 1540 1407 779 179 41 41 chr9 68299871 68300067 -49562560 - AluJb SINE Alu -25 287 92 953 132 0 0 chr9 68300175 68300319 -49562308 + AluSc SINE Alu 166 309 0 1848 109 0 0 chr9 68301884 68302122 -49560505 + AluSx SINE Alu 54 291 -21 204 232 18 18 chr9 68303320 68303376 -49559251 - MIR SINE MIR -70 138 83 450 223 39 0 chr9 68303551 68303654 -49558973 + MLT1A1 LTR MaLR 1 107 -258 1399 257 84 77 chr9 68303687 68304395 -49558232 + L1M4 LINE L1 4187 4908 -1238 2225 101 0 0 chr9 68304395 68304682 -49557945 - AluSq SINE Alu -26 287 1 1399 257 84 77 chr9 68304682 68305111 -49557516 + L1M4 LINE L1 4908 5332 -814 982 76 0 0 chr9 68305111 68305230 -49557397 + AluSq/x SINE Alu 1 119 -193 2456 279 124 13 chr9 68305230 68306411 -49556216 - L1MB7 LINE L1 -162 6022 4842 2811 217 73 52 chr9 68306411 68307394 -49555233 - L1MD3 LINE L1 -758 5388 4427 2445 84 0 3 chr9 68307394 68307705 -49554922 - AluSg SINE Alu 0 310 1 2811 217 73 52 chr9 68307705 68308147 -49554480 - L1MD3 LINE L1 -1719 4427 4724 2284 101 0 25 chr9 68308147 68308464 -49554163 - AluSx SINE Alu -3 309 1 2811 217 73 52 chr9 68308464 68308544 -49554083 - L1MD3 LINE L1 -1421 4725 4648 2126 103 17 3 chr9 68308688 68308979 -49553648 - AluSg SINE Alu -15 295 1 270 0 0 0 chr9 68309246 68309276 -49553351 + (CA)n Simple_repeat Simple_repeat 2 31 0 2307 107 0 0 chr9 68310077 68310377 -49552250 - AluSg SINE Alu -10 300 1 2611 200 63 53 chr9 68310548 68311511 -49551116 - L1MB7 LINE L1 -16 6168 5194 589 248 7 0 chr9 68312214 68312355 -49550272 - L1MD2 LINE L1 -56 6303 6162 213 189 57 38 chr9 68312485 68312538 -49550089 - L2 LINE L2 -1899 1415 1362 1965 86 11 15 chr9 68312649 68312943 -49549684 - AluSx SINE Alu 0 312 21 211 343 157 14 chr9 68313362 68313502 -49549125 + MIR SINE MIR 30 188 -74 33 80 0 0 chr9 68314146 68314221 -49548406 + AT_rich Low_complexity Low_complexity 1 75 0 4874 89 43 24 chr9 68314395 68315147 -49547480 + MER4E LTR ERV1 1 766 0 3179 198 13 5 chr9 68315246 68315863 -49546764 + LTR26E LTR ERV1 1 622 0 217 303 15 0 chr9 68316002 68316068 -49546559 + L2 LINE L2 3246 3312 -1 344 212 24 0 chr9 68316076 68316161 -49546466 + L1M4 LINE L1 440 526 -6028 2949 231 116 46 chr9 68316165 68316369 -49546258 + L1M4 LINE L1 349 537 -6027 275 0 0 28 chr9 68316369 68316405 -49546222 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 2949 231 116 46 chr9 68316405 68318265 -49544362 + L1M4 LINE L1 537 2559 -4005 5991 278 48 15 chr9 68318271 68321430 -49541197 + L1M4 LINE L1 2599 5893 -703 873 204 152 40 chr9 68321821 68322149 -49540478 + MLT1A1 LTR MaLR 1 365 0 264 214 0 112 chr9 68322338 68322371 -49540256 + MIR3 SINE MIR 84 119 -89 2110 174 70 0 chr9 68322371 68322774 -49539853 - MSTB1 LTR MaLR 0 432 2 264 214 0 112 chr9 68322774 68322829 -49539798 + MIR3 SINE MIR 119 162 -46 1726 146 27 33 chr9 68323007 68323308 -49539319 - AluSq SINE Alu -14 299 1 247 366 10 0 chr9 68323396 68323497 -49539130 - MIR SINE MIR 0 262 161 409 321 111 7 chr9 68323569 68323840 -49538787 - LTR16C LTR ERVL -104 387 89 315 299 11 0 chr9 68323936 68324023 -49538604 - MIR SINE MIR -152 110 23 850 301 73 10 chr9 68325322 68325624 -49537003 + LTR16A LTR ERVL 123 443 -7 1891 156 3 3 chr9 68326241 68326536 -49536091 - AluSx SINE Alu -17 295 1 23 33 0 0 chr9 68327058 68327088 -49535539 + AT_rich Low_complexity Low_complexity 1 30 0 290 304 35 70 chr9 68327576 68327777 -49534850 - HAL1b LINE L1 -861 487 294 180 0 0 0 chr9 68327911 68327931 -49534696 + (T)n Simple_repeat Simple_repeat 1 20 0 2193 107 7 0 chr9 68328265 68328563 -49534064 - AluSg SINE Alu -10 300 1 33 25 0 0 chr9 68330252 68330292 -49532335 + AT_rich Low_complexity Low_complexity 1 40 0 779 330 96 19 chr9 68330499 68331182 -49531445 + L1ME1 LINE L1 62 899 -5524 1315 269 105 41 chr9 68331184 68332231 -49530396 + L1ME1 LINE L1 957 2093 -4848 459 320 34 51 chr9 68332238 68332588 -49530039 + L1PA15 LINE L1 7 350 -7231 10655 202 12 0 chr9 68333472 68336601 -49526026 + L1PA15 LINE L1 4420 7596 -7 6246 251 98 31 chr9 68336602 68340893 -49521734 + L1ME1 LINE L1 2233 6811 -150 285 335 101 6 chr9 68342104 68342262 -49520365 + MIR3 SINE MIR 32 204 -4 35 0 0 0 chr9 68342488 68342523 -49520104 + AT_rich Low_complexity Low_complexity 1 35 0 3582 218 39 15 chr9 68342588 68343459 -49519168 - L1MD1 LINE L1 0 6636 5745 2214 255 73 8 chr9 68343465 68344300 -49518327 - L1MD1 LINE L1 -1432 5108 4220 2239 252 45 20 chr9 68344303 68345163 -49517464 - L1MD1 LINE L1 -2586 3954 3073 2191 161 71 2 chr9 68345165 68345575 -49517052 - Tigger2 DNA MER2_type -1 2717 2280 363 193 0 0 chr9 68345576 68345633 -49516994 - Tigger2 DNA MER2_type -2661 57 1 760 264 62 46 chr9 68345638 68346010 -49516617 - L1MD1 LINE L1 -3468 3072 2688 1317 260 74 59 chr9 68346010 68346522 -49516105 + MLT2B1 LTR ERVL 1 520 0 760 264 62 46 chr9 68346522 68346669 -49515958 - L1MD1 LINE L1 -3852 2688 2545 1269 178 115 11 chr9 68346670 68347007 -49515620 + MSTA LTR MaLR 1 364 0 3158 229 90 50 chr9 68347019 68348489 -49514138 - L1MD1 LINE L1 -4002 2538 1010 2293 105 0 0 chr9 68348493 68348787 -49513840 - AluSg1 SINE Alu -15 294 1 1521 46 0 0 chr9 68349724 68349898 -49512729 + AluY SINE Alu 1 174 -137 466 308 72 49 chr9 68349923 68350352 -49512275 - L1M4 LINE L1 -1366 4780 4342 1249 65 0 0 chr9 68350388 68350541 -49512086 - AluSg/x SINE Alu 0 312 160 244 306 0 0 chr9 68351216 68351278 -49511349 + (TATG)n Simple_repeat Simple_repeat 3 64 0 5655 258 61 21 chr9 68352063 68354050 -49508577 + L1M4b LINE L1 16 2083 -4876 511 259 7 0 chr9 68354089 68354236 -49508391 + L1M4b LINE L1 2365 2512 -4626 14265 144 24 5 chr9 68354411 68356780 -49505847 + Tigger1 DNA MER2_type 1 2414 -4 3486 250 58 47 chr9 68356840 68357506 -49505121 + L1M4b LINE L1 2476 3133 -3824 2013 106 0 0 chr9 68357506 68357771 -49504856 + AluSq SINE Alu 32 296 -17 3486 250 58 47 chr9 68357771 68358406 -49504221 + L1M4b LINE L1 3133 3759 -3198 243 0 0 0 chr9 68358406 68358433 -49504194 + (TA)n Simple_repeat Simple_repeat 2 28 0 1641 109 4 4 chr9 68358434 68358663 -49503964 - AluSg/x SINE Alu -5 307 79 3486 250 58 47 chr9 68358663 68358990 -49503637 + L1M4b LINE L1 3759 4081 -2876 2729 22 0 3 chr9 68358990 68359302 -49503325 + AluY SINE Alu 1 311 0 3486 250 58 47 chr9 68359302 68359661 -49502966 + L1M4b LINE L1 4081 4446 -2511 228 317 67 29 chr9 68360106 68360210 -49502417 + L2 LINE L2 3162 3269 -3 183 321 107 24 chr9 68361630 68361798 -49500829 + L2 LINE L2 2576 2757 -557 319 311 68 20 chr9 68361899 68362047 -49500580 - L1ME4a LINE L1 0 6121 5967 1562 135 56 16 chr9 68362257 68362509 -49500118 - AluJb SINE Alu -50 262 1 520 214 37 121 chr9 68362566 68362781 -49499846 - L2 LINE L2 -57 3256 3060 682 166 0 41 chr9 68362940 68363085 -49499542 - AluSc SINE Alu -166 143 5 433 234 76 107 chr9 68363135 68363425 -49499202 - LTR37B LTR ERV1 -179 289 9 2392 72 3 3 chr9 68364082 68364388 -49498239 - AluY SINE Alu -5 306 1 462 149 45 0 chr9 68364515 68364603 -49498024 + MER49 LTR ERV1 1 92 -505 1159 180 15 0 chr9 68364604 68364804 -49497823 - MER49 LTR ERV1 -720 203 1 448 181 36 0 chr9 68364823 68364906 -49497721 + MER49 LTR ERV1 209 294 -629 * 584 143 0 12 chr9 68364891 68365009 -49497618 + MER4E LTR ERV1 61 283 -615 * 1599 213 28 14 chr9 68365007 68365359 -49497268 + MER4D LTR ERV1 547 903 0 2289 93 10 7 chr9 68365941 68366242 -49496385 + AluSp SINE Alu 1 302 -11 1386 188 73 75 chr9 68366685 68366994 -49495633 - MER31B LTR ERV1 0 466 157 3600 102 13 133 chr9 68366994 68367514 -49495113 - MER4A LTR ERV1 0 664 260 2211 107 3 0 chr9 68367514 68367804 -49494823 + AluSq SINE Alu 1 291 -22 3600 102 13 133 chr9 68367804 68368037 -49494590 - MER4A LTR ERV1 -404 260 1 1386 188 73 75 chr9 68368037 68368194 -49494433 - MER31B LTR ERV1 -309 157 1 249 261 26 26 chr9 68368605 68368720 -49493907 + L1ME LINE L1 5465 5579 -583 216 225 0 38 chr9 68369293 68369373 -49493254 + A-rich Low_complexity Low_complexity 1 77 0 481 250 105 93 chr9 68369443 68369579 -49493048 - MIR SINE MIR -1 261 119 2310 62 24 0 chr9 68369579 68369867 -49492760 - AluY SINE Alu -13 298 4 481 250 105 93 chr9 68369867 68369978 -49492649 - MIR SINE MIR -143 119 11 1641 104 90 53 chr9 68370309 68370608 -49492019 + AluSx SINE Alu 1 310 -2 1733 260 105 30 chr9 68370790 68371883 -49490744 + L1MEc LINE L1 708 1882 -4514 3174 150 10 68 chr9 68371883 68372145 -49490482 + L1MA8 LINE L1 5520 5796 -495 2373 88 0 0 chr9 68372145 68372442 -49490185 + AluSc SINE Alu 1 297 -12 3174 150 10 68 chr9 68372442 68372867 -49489760 + L1MA8 LINE L1 5796 6167 -124 29 18 0 55 chr9 68372925 68372980 -49489647 + AT_rich Low_complexity Low_complexity 1 52 0 2651 191 122 27 chr9 68374327 68375140 -49487487 - MER106B DNA MER1_type -48 1011 122 1538 93 0 0 chr9 68375140 68375335 -49487292 - AluSq SINE Alu -118 195 3 195 139 0 0 chr9 68376011 68376047 -49486580 + (TAA)n Simple_repeat Simple_repeat 3 38 0 571 286 47 5 chr9 68376169 68376361 -49486266 + MIR SINE MIR 44 243 -19 232 353 134 25 chr9 68377005 68377206 -49485421 - MIR SINE MIR -34 228 6 2464 214 71 23 chr9 68378818 68379464 -49483163 - L1MD2 LINE L1 -55 6304 5628 900 302 31 14 chr9 68379486 68379907 -49482720 - L1MD2 LINE L1 -870 5276 4849 1745 299 63 57 chr9 68379911 68380699 -49481928 + L1MDb LINE L1 9 801 -5608 * 3244 248 60 38 chr9 68380694 68382521 -49480106 + L1MDb LINE L1 1532 3494 -2912 1782 150 6 57 chr9 68382553 68382867 -49479760 + AluJb SINE Alu 1 298 -14 4174 200 35 15 chr9 68382870 68384177 -49478450 + L1MB4 LINE L1 4849 6180 0 590 279 98 0 chr9 68384176 68384430 -49478197 - L1MD2 LINE L1 -1413 4733 4455 * 3718 51 2 7 chr9 68384507 68384957 -49477670 + LTR7 LTR ERV1 1 448 -2 16549 94 27 19 chr9 68384959 68387789 -49474838 + HERVH LTR ERV1 1 2987 -4726 904 140 7 0 chr9 68387783 68387933 -49474694 + HERVH LTR ERV1 3140 3290 -4423 * 3307 124 2 10 chr9 68387923 68388429 -49474198 + HERVH LTR ERV1 3492 3993 -3720 4431 139 3 1 chr9 68388431 68389092 -49473535 + HERVH LTR ERV1 4488 5149 -2564 1371 133 18 9 chr9 68389093 68389311 -49473316 + HERVH LTR ERV1 5600 5819 -1894 * 2431 78 67 13 chr9 68389309 68389681 -49472946 + HERVH LTR ERV1 7322 7713 0 3562 44 0 69 chr9 68389681 68390162 -49472465 + LTR7 LTR ERV1 1 448 -2 355 248 64 18 chr9 68390165 68390274 -49472353 - L1 LINE L1 -1759 4387 4274 1502 258 57 26 chr9 68390294 68390825 -49471802 - MER76 LTR ERV -124 564 18 2377 222 88 71 chr9 68391130 68392032 -49470595 - HERVL68 LTR ERVL -199 2838 1922 25 31 0 0 chr9 68392036 68392068 -49470559 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr9 68394781 68394810 -49467817 + AT_rich Low_complexity Low_complexity 1 29 0 245 272 97 0 chr9 68395062 68395165 -49467462 - MIR SINE MIR -84 178 66 256 221 21 42 chr9 68395178 68395273 -49467354 + L2 LINE L2 2592 2684 -630 227 185 31 108 chr9 68395320 68395385 -49467242 + LTR40a LTR ERVL 1 60 -459 348 245 198 63 chr9 68395588 68395841 -49466786 + LTR40a LTR ERVL 232 518 -1 982 293 97 28 chr9 68395848 68396399 -49466228 + L2 LINE L2 2722 3313 0 263 350 33 0 chr9 68397064 68397184 -49465443 + MIR SINE MIR 82 205 -57 1570 122 107 42 chr9 68398193 68398485 -49464142 + AluSg SINE Alu 3 311 0 461 222 13 46 chr9 68398849 68399002 -49463625 - Charlie5 DNA MER1_type 0 2624 2477 228 173 96 19 chr9 68399001 68399053 -49463574 - Charlie5 DNA MER1_type -2530 82 27 * 2525 123 18 67 chr9 68399574 68400022 -49462605 - LTR12 LTR ERV1 -234 480 55 271 211 0 0 chr9 68400064 68400116 -49462511 - LTR30 LTR ERV1 -670 52 1 232 287 11 11 chr9 68401107 68401194 -49461433 + (TA)n Simple_repeat Simple_repeat 1 87 0 622 267 43 27 chr9 68402218 68402405 -49460222 + MIR SINE MIR 14 203 -59 3292 191 110 42 chr9 68403115 68403246 -49459381 + MER106B DNA MER1_type 1 122 -937 1550 97 0 0 chr9 68403246 68403441 -49459186 + AluSq SINE Alu 1 195 -118 3292 191 110 42 chr9 68403441 68404256 -49458371 + MER106B DNA MER1_type 122 1011 -48 1434 121 50 50 chr9 68405539 68405837 -49456790 + MER1B DNA MER1_type 1 298 -41 21 36 0 0 chr9 68406436 68406464 -49456163 + AT_rich Low_complexity Low_complexity 1 28 0 27 73 0 0 chr9 68407709 68407764 -49454863 + AT_rich Low_complexity Low_complexity 1 55 0 333 123 15 0 chr9 68407796 68407861 -49454766 - L1MB4 LINE L1 -1 6179 6114 277 310 187 19 chr9 68408130 68408285 -49454342 - MIR SINE MIR -76 186 6 676 271 77 29 chr9 68408342 68408737 -49453890 + L1MC5 LINE L1 6490 6893 -915 449 243 82 68 chr9 68408794 68409074 -49453553 - L1MC5 LINE L1 -426 7535 7252 268 284 84 42 chr9 68409104 68409294 -49453333 - L1MC5 LINE L1 -854 7107 6910 227 315 0 22 chr9 68409728 68409817 -49452810 - HAL1b LINE L1 -718 630 544 338 316 72 40 chr9 68409960 68410238 -49452389 - HAL1b LINE L1 -1009 339 53 504 221 54 44 chr9 68410298 68410502 -49452125 + L1MCa LINE L1 1137 1342 -5084 12733 127 13 6 chr9 68410688 68412660 -49449967 - L1P LINE L1 -744 5402 3417 876 199 83 119 chr9 68412666 68413002 -49449625 - MLT1A1 LTR MaLR -38 327 4 386 283 128 41 chr9 68413040 68413259 -49449368 - MIR SINE MIR -2 260 23 25 0 0 0 chr9 68413483 68413508 -49449119 + AT_rich Low_complexity Low_complexity 1 25 0 1460 221 64 34 chr9 68413911 68414351 -49448276 + MER31B LTR ERV1 14 466 0 384 22 0 0 chr9 68415232 68415277 -49447350 + (TG)n Simple_repeat Simple_repeat 1 45 0 1955 112 90 0 chr9 68417605 68417882 -49444745 - AluSx SINE Alu -10 302 1 2392 79 0 0 chr9 68418694 68418984 -49443643 - AluY SINE Alu -21 290 1 795 253 16 0 chr9 68421566 68421752 -49440875 - MER5A DNA MER1_type 0 189 1 625 201 62 7 chr9 68422914 68423056 -49439571 - MER45R DNA AcHobo -2 1579 1430 239 167 17 17 chr9 68423056 68423116 -49439511 - MLT2B1 LTR ERVL -3 517 458 194 91 30 0 chr9 68423118 68423151 -49439476 + (TAGA)n Simple_repeat Simple_repeat 4 37 0 2700 107 27 3 chr9 68423153 68423519 -49439108 + THE1C LTR MaLR 1 375 0 638 238 107 30 chr9 68423541 68423799 -49438828 - MLT2B1 LTR ERVL -60 460 133 201 349 12 12 chr9 68423919 68424002 -49438625 - MIR3 SINE MIR -12 196 114 1615 199 3 10 chr9 68424445 68424736 -49437891 - MLT1A1 LTR MaLR 0 365 77 2272 96 0 10 chr9 68424736 68425039 -49437588 - AluSc SINE Alu -9 300 1 2378 104 17 158 chr9 68425039 68425559 -49437068 + MER4A LTR ERV1 218 664 0 1074 177 80 37 chr9 68425568 68425868 -49436759 + MER31B LTR ERV1 154 466 0 2300 93 10 7 chr9 68426311 68426612 -49436015 - AluSp SINE Alu -11 302 1 1637 213 28 14 chr9 68427194 68427546 -49435081 - MER4D LTR ERV1 0 903 547 601 143 0 12 chr9 68427544 68427662 -49434965 - MER4E LTR ERV1 -615 164 61 * 451 182 0 0 chr9 68427653 68427730 -49434897 - MER49 LTR ERV1 -638 285 209 * 1141 190 15 0 chr9 68427749 68427949 -49434678 + MER49 LTR ERV1 1 203 -720 469 149 45 0 chr9 68427950 68428038 -49434589 - MER49 LTR ERV1 -505 92 1 2413 72 3 3 chr9 68428165 68428471 -49434156 + AluY SINE Alu 1 306 -5 859 196 48 167 chr9 68429129 68429462 -49433165 + LTR37B LTR ERV1 9 380 -46 2237 57 60 0 chr9 68429462 68429745 -49432882 + AluY SINE Alu 1 300 -11 859 196 48 167 chr9 68429745 68429852 -49432775 + LTR37B LTR ERV1 380 354 -72 1752 161 3 24 chr9 68429852 68430144 -49432483 - AluJb SINE Alu -26 286 1 859 196 48 167 chr9 68430144 68430211 -49432416 + LTR37B LTR ERV1 353 426 0 355 372 23 0 chr9 68430635 68430764 -49431863 - MER5B DNA MER1_type -1 177 46 570 135 0 10 chr9 68430770 68430874 -49431753 - L1MA9 LINE L1 -22 6290 6188 209 326 10 31 chr9 68430908 68431006 -49431621 - MER5A DNA MER1_type -24 165 70 1933 148 64 31 chr9 68431703 68432062 -49430565 + THE1C LTR MaLR 5 375 0 249 247 0 0 chr9 68432559 68432640 -49429987 + (TA)n Simple_repeat Simple_repeat 1 81 0 245 301 48 3 chr9 68432658 68432831 -49429796 - L1ME2 LINE L1 -223 5947 5771 21 36 0 0 chr9 68432848 68432876 -49429751 + AT_rich Low_complexity Low_complexity 1 28 0 423 313 115 25 chr9 68432939 68433373 -49429254 - L1MEd LINE L1 -3527 3117 2645 1310 194 34 42 chr9 68433611 68433967 -49428660 - L1MA8 LINE L1 -10 6281 5929 254 340 30 10 chr9 68434210 68434310 -49428317 - L1MEd LINE L1 -4862 1772 1671 459 114 38 25 chr9 68434878 68434957 -49427670 - MADE1 DNA Mariner 0 80 1 193 200 187 0 chr9 68435968 68436043 -49426584 - MIR3 SINE MIR -105 103 15 218 316 44 44 chr9 68439001 68439115 -49423512 - L2 LINE L2 -20 3293 3180 254 329 54 27 chr9 68439644 68439793 -49422834 - MIR SINE MIR -105 157 5 676 253 77 15 chr9 68439911 68440154 -49422473 - L1MB5 LINE L1 -20 6154 5893 1751 169 3 41 chr9 68440154 68440468 -49422159 - AluJo SINE Alu -4 308 7 676 253 77 15 chr9 68440468 68440485 -49422142 - L1MB5 LINE L1 -281 5893 5878 1435 254 29 19 chr9 68440491 68441006 -49421621 - L1MEd LINE L1 -4877 1665 1146 349 129 16 0 chr9 68441722 68441784 -49420843 + L1MD3 LINE L1 7925 7987 -8 2276 98 0 7 chr9 68441784 68442081 -49420546 + AluSc SINE Alu 1 295 -14 581 237 66 50 chr9 68442814 68443012 -49419615 + MIR SINE MIR 42 242 -20 1791 195 77 14 chr9 68443147 68443562 -49419065 - MLT1C LTR MaLR -16 451 11 2034 130 7 0 chr9 68444172 68444465 -49418162 - AluSx SINE Alu -17 295 1 1131 243 129 77 chr9 68444641 68445159 -49417468 - MLT1H LTR MaLR 0 549 5 229 237 34 0 chr9 68445187 68445246 -49417381 - MER58C DNA MER1_type 0 215 155 462 222 51 8 chr9 68445306 68445423 -49417204 - MER58C DNA MER1_type -83 132 11 740 207 39 15 chr9 68445732 68445935 -49416692 - L1M4 LINE L1 -1383 4763 4556 * 2190 266 76 20 chr9 68445922 68446733 -49415894 - L1M4 LINE L1 -2021 4125 3269 1154 166 18 13 chr9 68446833 68447062 -49415565 - AluSx SINE Alu -82 230 1 1006 247 133 81 chr9 68447239 68447757 -49414870 - MLT1H LTR MaLR 0 549 5 452 248 43 0 chr9 68447902 68448019 -49414608 - MER58C DNA MER1_type -83 132 11 740 207 39 15 chr9 68448328 68448531 -49414096 - L1M4 LINE L1 -1383 4763 4556 * 1901 266 62 22 chr9 68448518 68449145 -49413482 - L1M4 LINE L1 -2021 4125 3474 222 205 0 0 chr9 68449349 68449388 -49413239 + (CATA)n Simple_repeat Simple_repeat 2 40 0 3395 210 53 25 chr9 68449390 68450253 -49412374 - MER45R DNA AcHobo -191 1390 504 717 216 88 102 chr9 68450311 68450663 -49411964 - MER45R DNA AcHobo -1234 347 1 698 209 19 47 chr9 68451967 68452178 -49410449 - L1ME2 LINE L1 -19 6145 5941 312 143 0 0 chr9 68452929 68452985 -49409642 + (TTTA)n Simple_repeat Simple_repeat 3 58 0 608 337 41 27 chr9 68453159 68453320 -49409307 - L2 LINE L2 -5 3308 3151 4274 179 55 38 chr9 68453320 68453500 -49409127 - MER6 DNA MER2_type 0 865 690 2002 131 10 7 chr9 68453500 68453798 -49408829 + AluSx SINE Alu 3 301 -11 4274 179 55 38 chr9 68453798 68454467 -49408160 - MER6 DNA MER2_type -175 690 1 608 337 41 27 chr9 68454467 68454670 -49407957 - L2 LINE L2 -162 3151 2939 202 381 35 30 chr9 68454913 68455110 -49407517 + L2 LINE L2 2856 3053 -219 277 116 23 35 chr9 68455257 68455343 -49407284 + (TG)n Simple_repeat Simple_repeat 2 86 0 22 0 0 0 chr9 68455591 68455613 -49407014 + AT_rich Low_complexity Low_complexity 1 22 0 198 103 0 0 chr9 68456099 68456128 -49406499 + (GACTG)n Simple_repeat Simple_repeat 4 32 0 2439 86 0 0 chr9 68456228 68456531 -49406096 - AluY SINE Alu -8 303 1 217 185 37 37 chr9 68457784 68457838 -49404789 + MER5B DNA MER1_type 59 112 -66 7062 66 12 6 chr9 68458630 68460089 -49402538 + L1PA7 LINE L1 4678 6142 -12 454 202 0 0 chr9 68461015 68461099 -49401528 + MER63 DNA MER1_type 44 753 -309 1308 130 10 0 chr9 68461099 68461299 -49401328 - AluSc SINE Alu 0 309 108 1922 118 3 16 chr9 68461300 68461613 -49401014 - AluSc SINE Alu 0 309 1 184 318 45 0 chr9 68462089 68462155 -49400472 + MIR SINE MIR 134 202 -60 292 130 29 29 chr9 68462588 68462657 -49399970 + (CATATA)n Simple_repeat Simple_repeat 1 69 0 200 284 0 40 chr9 68464076 68464150 -49398477 + GA-rich Low_complexity Low_complexity 2 72 0 1822 133 15 155 chr9 68464429 68464829 -49397798 + MER7A DNA MER2_type 5 346 0 1065 224 101 72 chr9 68464882 68465328 -49397299 + MER31B LTR ERV1 1 459 -7 2029 149 7 0 chr9 68466180 68466481 -49396146 - AluSx SINE Alu -9 303 1 1016 225 138 28 chr9 68467595 68467732 -49394895 - L1 LINE L1 -2868 3278 3158 2262 88 26 10 chr9 68467732 68468038 -49394589 - AluSx SINE Alu -1 311 1 1016 225 138 28 chr9 68468038 68468335 -49394292 - L1 LINE L1 -2988 3158 2796 674 244 18 0 chr9 68468382 68468550 -49394077 + L1MDb LINE L1 5 175 -6234 539 309 99 27 chr9 68468572 68468905 -49393722 + L1MDb LINE L1 237 593 -5816 570 211 55 0 chr9 68468908 68469036 -49393591 + L1MD1 LINE L1 6088 6222 -20 303 188 0 0 chr9 68469141 68469189 -49393438 + AluJo SINE Alu 1 48 -254 1475 181 0 4 chr9 68469233 68469493 -49393134 + AluJo SINE Alu 54 312 0 186 43 0 0 chr9 68469504 68469527 -49393100 + (CA)n Simple_repeat Simple_repeat 2 24 0 1637 260 111 44 chr9 68469537 68470639 -49391988 + L1M4 LINE L1 2685 3871 -2275 1910 114 9 47 chr9 68470639 68470956 -49391671 + AluSp SINE Alu 1 305 -8 1637 260 111 44 chr9 68470956 68471028 -49391599 + L1M4 LINE L1 3871 3937 -2209 746 220 137 42 chr9 68471029 68471228 -49391399 + MER4C LTR ERV1 1 228 -237 1551 112 0 76 chr9 68471228 68471477 -49391150 + MER30 DNA MER1_type 1 230 0 746 220 137 42 chr9 68471477 68471518 -49391109 + MER4C LTR ERV1 228 264 -201 300 191 29 15 chr9 68471495 68471563 -49391064 + LTR59 LTR ERV1 352 420 -177 * 648 262 11 21 chr9 68471582 68471773 -49390854 + MER4C LTR ERV1 273 461 -4 1226 282 84 53 chr9 68471861 68472418 -49390209 + L1M4 LINE L1 4213 4751 -1395 1741 188 169 5 chr9 68472418 68472844 -49389783 + LTR54B LTR ERV1 1 496 -2 1226 282 84 53 chr9 68472844 68473346 -49389281 + L1M4 LINE L1 4751 5305 -841 867 191 67 21 chr9 68473357 68473551 -49389076 + LTR52 LTR ERVL 216 418 -3 323 252 130 30 chr9 68474657 68474788 -49387839 + MLT1G LTR MaLR 89 232 -323 545 214 40 27 chr9 68475028 68475199 -49387428 + MLT1G LTR MaLR 431 589 -1 415 175 31 21 chr9 68476030 68476127 -49386500 + MER4A LTR ERV1 1 98 -566 1777 135 3 30 chr9 68476127 68476482 -49386145 + MER4A LTR ERV1 261 664 0 406 331 22 33 chr9 68476734 68476915 -49385712 + HAL1b LINE L1 70 248 -1100 444 281 49 35 chr9 68476926 68477129 -49385498 + HAL1b LINE L1 291 496 -852 2713 118 11 48 chr9 68477432 68477549 -49385078 + MER61B LTR ERV1 1 121 -304 300 27 0 0 chr9 68477549 68477586 -49385041 + (TTG)n Simple_repeat Simple_repeat 3 39 0 1972 130 22 0 chr9 68477593 68477870 -49384757 - AluSx SINE Alu -29 283 1 2713 118 11 48 chr9 68477870 68478185 -49384442 + MER61B LTR ERV1 127 425 0 434 195 0 0 chr9 68478246 68478328 -49384299 + FLAM SINE Alu 50 131 -12 249 139 0 0 chr9 68479374 68479417 -49383210 + (CA)n Simple_repeat Simple_repeat 2 44 0 208 349 12 12 chr9 68479559 68479642 -49382985 - MIR3 SINE MIR -12 196 114 248 303 121 64 chr9 68479896 68480085 -49382542 + L2 LINE L2 1709 1886 -1428 1752 190 3 55 chr9 68480085 68480380 -49382247 - MLT1A1 LTR MaLR 0 365 93 2304 94 0 3 chr9 68480380 68480677 -49381950 - AluSc SINE Alu -9 300 5 1752 190 3 55 chr9 68480677 68480766 -49381861 - MLT1A1 LTR MaLR -272 93 1 248 303 121 64 chr9 68480766 68481107 -49381520 + L2 LINE L2 1886 2269 -1045 368 242 82 77 chr9 68481443 68481625 -49381002 + L2 LINE L2 3103 3285 -28 2059 140 0 3 chr9 68481701 68482009 -49380618 + AluSq SINE Alu 2 308 -5 2231 109 3 0 chr9 68482745 68483047 -49379580 + AluY SINE Alu 1 303 -8 227 275 55 33 chr9 68483461 68483552 -49379075 - L2 LINE L2 -239 3033 2941 1039 115 0 0 chr9 68483773 68483912 -49378715 + AluSg SINE Alu 1 139 -171 255 410 20 0 chr9 68483996 68484096 -49378531 - L2 LINE L2 -630 2684 2583 610 305 71 30 chr9 68484487 68484782 -49377845 + L2 LINE L2 1918 2224 -1090 242 323 99 12 chr9 68484782 68484943 -49377684 - L2 LINE L2 -19 3294 3120 3431 168 110 14 chr9 68484975 68485714 -49376913 + MER21A LTR ERV1 122 931 0 283 310 179 55 chr9 68485729 68486285 -49376342 - L2 LINE L2 0 3313 2689 366 326 92 14 chr9 68486331 68486625 -49376002 - L2 LINE L2 -774 2540 2224 428 324 24 6 chr9 68486642 68486812 -49375815 + L2 LINE L2 2523 2695 -619 2218 205 0 0 chr9 68486856 68487315 -49375312 + L1MB5 LINE L1 4641 5099 -1047 2852 184 31 44 chr9 68487454 68488092 -49374535 + L1MB5 LINE L1 5501 6131 -43 2011 144 10 0 chr9 68488092 68488397 -49374230 + AluSg SINE Alu 3 310 0 2852 184 31 44 chr9 68488397 68488433 -49374194 + L1MB5 LINE L1 6131 6166 -8 403 296 118 38 chr9 68488452 68488638 -49373989 + L2 LINE L2 2927 3127 -186 255 152 0 0 chr9 68488651 68488697 -49373930 + (TATATG)n Simple_repeat Simple_repeat 1 46 0 517 267 73 44 chr9 68488705 68488911 -49373716 + MIR SINE MIR 49 260 -2 242 264 0 11 chr9 68489575 68489666 -49372961 + CT-rich Low_complexity Low_complexity 2 91 0 303 213 40 0 chr9 68490266 68490341 -49372286 + MER116 DNA Mariner 3 80 0 25 31 0 0 chr9 68490367 68490399 -49372228 + AT_rich Low_complexity Low_complexity 1 32 0 722 185 250 0 chr9 68490527 68490727 -49371900 - MLT1D LTR MaLR 0 505 256 2040 148 11 29 chr9 68490760 68491139 -49371488 + MER4E LTR ERV1 408 779 0 2061 122 45 0 chr9 68491959 68492246 -49370381 - AluSx SINE Alu -12 300 1 365 179 137 0 chr9 68492547 68492642 -49369985 + L1MC5 LINE L1 7821 7928 -33 6417 92 11 1 chr9 68493016 68494450 -49368177 + L1PA10 LINE L1 4723 6167 -1 353 37 19 0 chr9 68494463 68494517 -49368110 + L1PA16 LINE L1 6112 6166 0 333 336 17 8 chr9 68495227 68495346 -49367281 + MIR SINE MIR 10 129 -133 2308 118 0 0 chr9 68495787 68496100 -49366527 - AluSp SINE Alu 0 313 1 1626 188 95 19 chr9 68496591 68497001 -49365626 - MLT1C LTR MaLR -23 444 4 21 0 0 0 chr9 68497362 68497383 -49365244 + AT_rich Low_complexity Low_complexity 1 21 0 541 307 78 0 chr9 68497753 68497945 -49364682 + MIR SINE MIR 31 237 -25 3321 127 7 40 chr9 68498006 68498599 -49364028 - MER4B LTR ERV1 -36 574 2 2107 108 4 0 chr9 68499995 68500272 -49362355 + AluSx SINE Alu 21 298 -14 1765 173 48 0 chr9 68500274 68500610 -49362017 - L1MC3 LINE L1 -252 7533 7182 851 350 45 7 chr9 68500733 68501156 -49361471 - L1M3c LINE L1 -5702 439 1 513 195 178 0 chr9 68501269 68501443 -49361184 - L1MCa LINE L1 -4844 1582 1378 2043 98 58 0 chr9 68502379 68502655 -49359972 - AluSc SINE Alu -17 292 1 4119 82 13 0 chr9 68503463 68504010 -49358617 - MER41A LTR ERV1 0 554 1 22 70 0 0 chr9 68504169 68504212 -49358415 + AT_rich Low_complexity Low_complexity 1 43 0 681 323 20 0 chr9 68504225 68504473 -49358154 - MER20B DNA MER1_type -267 516 264 305 296 61 45 chr9 68504731 68504863 -49357764 - MIR SINE MIR -117 145 12 332 286 41 41 chr9 68505610 68505781 -49356846 - MIR SINE MIR -91 171 1 4316 70 4 2 chr9 68506353 68506906 -49355721 + MER41A LTR ERV1 1 554 0 513 237 22 7 chr9 68507158 68507297 -49355330 + MLT1H1 LTR MaLR 400 540 -15 1926 163 0 10 chr9 68507984 68508290 -49354337 - AluJo SINE Alu -9 303 1 233 288 0 15 chr9 68508290 68508356 -49354271 + MIR SINE MIR 22 86 -176 1832 130 147 11 chr9 68508567 68508914 -49353713 + MSTA LTR MaLR 1 394 -34 947 189 6 0 chr9 68508918 68509125 -49353502 - AluSg/x SINE Alu 0 312 133 252 132 0 0 chr9 68509126 68509164 -49353463 + MSTA LTR MaLR 390 427 -1 418 334 56 40 chr9 68511688 68511990 -49350637 + HAL1b LINE L1 90 396 -952 1886 162 80 3 chr9 68512162 68512501 -49350126 - MLT1A1 LTR MaLR 0 365 1 1469 145 171 86 chr9 68514194 68514622 -49348005 + MER31B LTR ERV1 3 466 0 364 263 57 41 chr9 68514646 68514840 -49347787 - LTR33 LTR ERVL -321 200 4 32 26 0 0 chr9 68515331 68515370 -49347257 + AT_rich Low_complexity Low_complexity 1 39 0 629 289 46 20 chr9 68516964 68517161 -49345466 - MIR SINE MIR -43 219 18 30 45 0 0 chr9 68517242 68517286 -49345341 + AT_rich Low_complexity Low_complexity 1 44 0 251 251 85 78 chr9 68517455 68517726 -49344901 - L1M4 LINE L1 -1296 4850 4578 881 174 0 19 chr9 68518262 68518417 -49344210 - FRAM SINE Alu -14 152 1 477 256 99 23 chr9 68518790 68518962 -49343665 - MIR SINE MIR -26 236 52 312 280 319 0 chr9 68519527 68519684 -49342943 + MIR SINE MIR 18 224 -38 821 249 70 45 chr9 68519707 68520133 -49342494 - LTR56 LTR ERV1 0 445 9 1088 74 11 11 chr9 68523317 68523492 -49339135 + (GAAA)n Simple_repeat Simple_repeat 4 178 0 787 289 63 30 chr9 68523526 68523920 -49338707 + MLT1J2 LTR MaLR 1 407 -43 4343 142 4 31 chr9 68524279 68525062 -49337565 - L1PA16 LINE L1 -1 6165 5404 4702 219 15 19 chr9 68525062 68526251 -49336376 + L1P LINE L1 4164 5348 -798 686 213 6 16 chr9 68526254 68526437 -49336190 - L1MEc LINE L1 -3072 3143 2963 1020 281 48 23 chr9 68526445 68527151 -49335476 - L1MEc LINE L1 -3225 2990 2302 27 29 0 0 chr9 68527425 68527459 -49335168 + AT_rich Low_complexity Low_complexity 1 34 0 2022 143 0 3 chr9 68527524 68527818 -49334809 - AluSq SINE Alu -18 295 3 2056 111 4 0 chr9 68527831 68528111 -49334516 - AluSc SINE Alu -12 297 17 711 261 167 30 chr9 68529302 68529774 -49332853 - L1M4 LINE L1 -1227 4919 4383 369 227 0 0 chr9 68529777 68529865 -49332762 - L1MA10 LINE L1 0 6334 6247 1423 205 51 8 chr9 68529883 68530234 -49332393 + L1MC/D LINE L1 1986 2351 -4189 2588 211 41 37 chr9 68530234 68531377 -49331250 + L1MC/D LINE L1 4909 6059 -694 22 35 0 0 chr9 68532351 68532380 -49330247 + AT_rich Low_complexity Low_complexity 1 29 0 2426 101 5 48 chr9 68533104 68533500 -49329127 - MER11C LTR ERVK -15 1056 678 187 333 12 24 chr9 68534881 68534965 -49327662 - MIR SINE MIR 0 262 180 696 247 39 26 chr9 68535200 68535318 -49327309 - L1M4 LINE L1 -3591 2555 2440 1936 131 60 38 chr9 68535318 68535685 -49326942 + THE1C LTR MaLR 1 375 0 696 247 39 26 chr9 68535685 68535797 -49326830 - L1M4 LINE L1 -3706 2440 2322 1166 260 123 17 chr9 68537548 68538133 -49324494 + L1ME3A LINE L1 4479 5125 -1021 711 306 126 42 chr9 68538172 68538952 -49323675 + L1MDa LINE L1 3251 4095 -2445 5311 203 28 60 chr9 68539486 68539767 -49322860 + Charlie1a DNA MER1_type 21 310 -2451 2182 121 3 3 chr9 68539767 68540074 -49322553 + AluSx SINE Alu 1 307 -5 5311 203 28 60 chr9 68540074 68541268 -49321359 + Charlie1a DNA MER1_type 310 1448 -7 234 333 12 0 chr9 68542623 68542704 -49319923 - MIR SINE MIR -111 151 70 1946 100 87 0 chr9 68542747 68543057 -49319570 - L1MA2 LINE L1 0 6304 5968 637 134 31 10 chr9 68544332 68544429 -49318198 + AluSg SINE Alu 18 116 -194 689 269 53 16 chr9 68545753 68546076 -49316551 + L1MDb LINE L1 1062 1396 -5013 277 208 113 64 chr9 68546308 68546405 -49316222 + L1MDb LINE L1 1297 1388 -5018 1041 247 89 46 chr9 68546405 68546797 -49315830 - MER92A LTR ERV1 0 412 4 277 208 113 64 chr9 68546797 68546931 -49315696 + L1MDb LINE L1 1388 1638 -4768 * 646 271 19 24 chr9 68546902 68547109 -49315518 + L1ME1 LINE L1 6144 6349 -77 1381 288 14 35 chr9 68547173 68547767 -49314860 + L1ME3A LINE L1 5374 5954 -216 2089 113 3 3 chr9 68547896 68548207 -49314420 + AluSg SINE Alu 1 311 0 531 134 42 23 chr9 68548663 68548969 -49313658 + (TAGA)n Simple_repeat Simple_repeat 1 312 0 188 343 14 0 chr9 68549096 68549166 -49313461 + L3b LINE CR1 1337 1407 -176 1445 199 148 35 chr9 68550086 68550538 -49312089 - MLT1D LTR MaLR -2 503 1 2271 95 0 14 chr9 68550910 68551205 -49311422 + AluSx SINE Alu 3 293 -19 328 262 17 57 chr9 68552643 68552812 -49309815 + L1MC/D LINE L1 5542 5701 -504 338 286 0 0 chr9 68552875 68552952 -49309675 + MER82 DNA MER2_type 4 80 -573 * 437 179 0 12 chr9 68552949 68553033 -49309594 - MLT2D LTR ERVL -331 83 1 201 231 0 0 chr9 68554549 68554588 -49308039 - L2 LINE L2 -19 3294 3256 263 271 0 0 chr9 68554595 68554654 -49307973 - MIR SINE MIR -147 115 57 324 70 0 0 chr9 68555287 68555330 -49307297 + (TA)n Simple_repeat Simple_repeat 2 44 0 276 130 0 0 chr9 68555331 68555377 -49307250 + (GA)n Simple_repeat Simple_repeat 2 47 0 1904 224 46 6 chr9 68556832 68557310 -49305317 - MLT1D LTR MaLR -8 497 1 1349 96 10 0 chr9 68557396 68557595 -49305032 + L1PB1 LINE L1 5949 6149 -2 1698 232 115 11 chr9 68558401 68558853 -49303774 + MLT1D LTR MaLR 7 505 0 241 275 100 42 chr9 68558874 68559114 -49303513 + L2 LINE L2 2241 2494 -820 211 114 45 0 chr9 68559788 68559832 -49302795 + CT-rich Low_complexity Low_complexity 2 47 0 498 322 151 34 chr9 68559940 68560733 -49301894 + L2 LINE L2 1691 2576 -738 326 217 22 145 chr9 68560738 68560876 -49301751 + MLT1G LTR MaLR 453 573 -17 3139 156 75 45 chr9 68560983 68561687 -49300940 - LTR8A LTR ERV1 0 727 3 200 351 30 61 chr9 68561991 68562122 -49300505 + L2 LINE L2 3137 3263 -9 632 247 157 19 chr9 68562422 68562873 -49299754 - MLT1F LTR MaLR 0 542 1 1300 192 0 9 chr9 68563023 68563247 -49299380 + AluJo SINE Alu 61 282 -30 2361 96 0 3 chr9 68563939 68564241 -49298386 - AluSq SINE Alu -9 304 4 615 352 64 30 chr9 68564637 68565043 -49297584 + L2 LINE L2 863 1282 -2032 820 164 0 0 chr9 68565144 68565266 -49297361 + AluJb SINE Alu 164 285 -27 327 255 31 20 chr9 68565584 68565682 -49296945 + MLT1J1 LTR MaLR 85 183 -263 293 204 84 144 chr9 68566596 68566763 -49295864 + MLT1J1 LTR MaLR 286 442 -4 254 319 94 12 chr9 68566917 68567077 -49295550 + L2 LINE L2 1512 1684 -1630 1622 267 106 16 chr9 68567227 68567801 -49294826 + L1ME3A LINE L1 5529 6154 -16 1740 213 82 5 chr9 68568282 68568671 -49293956 + MLT1D LTR MaLR 87 505 0 23 0 0 0 chr9 68569254 68569277 -49293350 + AT_rich Low_complexity Low_complexity 1 23 0 532 170 75 41 chr9 68569415 68569562 -49293065 + L1MC5 LINE L1 7270 7421 -540 573 110 0 0 chr9 68569750 68569841 -49292786 + (TAGA)n Simple_repeat Simple_repeat 2 92 0 526 232 161 7 chr9 68569891 68570046 -49292581 - MER5A DNA MER1_type 0 189 11 21 71 0 0 chr9 68570280 68570322 -49292305 + AT_rich Low_complexity Low_complexity 1 42 0 357 295 53 58 chr9 68570394 68570601 -49292026 - HAL1 LINE L1 -15 2492 2287 2065 255 55 34 chr9 68570639 68571545 -49291082 + L1MC5 LINE L1 6999 7923 -38 25 51 0 0 chr9 68571634 68571673 -49290954 + AT_rich Low_complexity Low_complexity 1 39 0 5166 176 20 59 chr9 68571831 68573015 -49289612 + L1MC3 LINE L1 6175 7312 -473 23 0 0 0 chr9 68573015 68573038 -49289589 + AT_rich Low_complexity Low_complexity 1 23 0 217 188 21 0 chr9 68573038 68573086 -49289541 + (TA)n Simple_repeat Simple_repeat 1 49 0 273 226 20 20 chr9 68573143 68573245 -49289382 - HAL1b LINE L1 -501 847 746 368 294 75 50 chr9 68573607 68573808 -49288819 - HAL1 LINE L1 -1215 1292 1087 * 387 266 76 70 chr9 68573793 68574135 -49288492 - HAL1 LINE L1 -1353 1154 811 2412 84 0 3 chr9 68574190 68574500 -49288127 + AluY SINE Alu 1 309 -2 210 71 0 0 chr9 68577302 68577330 -49285297 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 1292 291 90 26 chr9 68577418 68577965 -49284662 - MLT1E LTR MaLR -4 589 8 1418 193 52 39 chr9 68578020 68578326 -49284301 + AluJo SINE Alu 1 310 -2 1135 224 146 19 chr9 68578339 68578661 -49283966 - MLT1A1 LTR MaLR 0 365 3 1290 217 48 74 chr9 68583573 68584075 -49278552 + MER110 LTR ERV1 3 491 0 230 246 31 0 chr9 68584951 68585016 -49277611 - MER5A DNA MER1_type 0 189 123 359 274 55 0 chr9 68585034 68585168 -49277459 + L1MD2 LINE L1 6011 6164 0 899 278 104 36 chr9 68585205 68585794 -49276833 + L1MC4 LINE L1 7413 8041 -1 1195 150 101 2 chr9 68585799 68586201 -49276426 - MLT1D LTR MaLR 0 505 3 1271 241 47 22 chr9 68586246 68586735 -49275892 + L1M4 LINE L1 2912 3412 -2734 2089 240 107 33 chr9 68588112 68588605 -49274022 - L1MD2 LINE L1 -29 6330 5772 489 123 41 0 chr9 68588605 68588678 -49273949 - MADE1 DNA Mariner 0 80 5 2089 240 107 33 chr9 68588678 68588856 -49273771 - L1MD2 LINE L1 -587 5772 5609 1785 189 7 0 chr9 68589553 68589860 -49272767 - AluJb SINE Alu -3 309 1 483 289 13 57 chr9 68591454 68591613 -49271014 + MLT1I LTR MaLR 4 155 -254 483 250 16 0 chr9 68591654 68591782 -49270845 + MLT1I LTR MaLR 278 407 -2 3326 93 35 0 chr9 68592451 68592490 -49270137 - MLT2A1 LTR ERVL 0 444 408 266 0 29 0 chr9 68592490 68592524 -49270103 + (TA)n Simple_repeat Simple_repeat 2 36 0 3326 93 35 0 chr9 68592524 68592913 -49269714 - MLT2A1 LTR ERVL -36 408 1 247 261 165 17 chr9 68595103 68595218 -49267409 - MIR SINE MIR -19 243 112 454 261 61 9 chr9 68595996 68596111 -49266516 + MER63 DNA MER1_type 1 747 -315 2693 198 41 13 chr9 68596943 68597484 -49265143 + MER74A LTR ERVL 3 558 0 300 282 42 49 chr9 68597485 68597627 -49265000 + MLT1J LTR MaLR 15 155 -356 243 263 91 10 chr9 68597661 68597760 -49264867 + MLT1J LTR MaLR 214 320 -191 2823 102 3 3 chr9 68598992 68599366 -49263261 - L1PB1 LINE L1 -2 6149 5776 246 233 0 0 chr9 68599366 68599426 -49263201 + (CATA)n Simple_repeat Simple_repeat 2 61 0 1847 77 0 8 chr9 68599426 68599673 -49262954 - L1PB1 LINE L1 -361 5790 5546 1293 169 30 17 chr9 68599888 68600125 -49262502 - LTR32 LTR ERVL 0 471 232 2193 138 0 3 chr9 68600143 68600454 -49262173 + AluSx SINE Alu 1 310 -2 842 288 112 32 chr9 68601082 68601457 -49261170 - MLT1I LTR MaLR -3 406 2 2462 68 0 0 chr9 68601566 68601862 -49260765 + AluY SINE Alu 1 296 -15 216 175 0 25 chr9 68602313 68602353 -49260274 + (CGTG)n Simple_repeat Simple_repeat 1 39 0 2528 182 62 88 chr9 68603066 68603538 -49259089 - LTR8 LTR ERV1 -2 689 238 1952 104 0 0 chr9 68603538 68603836 -49258791 + AluSx SINE Alu 34 331 0 2528 182 62 88 chr9 68603836 68604054 -49258573 - LTR8 LTR ERV1 -453 238 16 247 282 0 87 chr9 68604530 68604633 -49257994 + MER5B DNA MER1_type 80 173 -5 504 242 163 0 chr9 68604655 68604808 -49257819 + MER5A DNA MER1_type 10 187 -2 329 289 145 18 chr9 68605085 68605251 -49257376 - MIR SINE MIR -19 243 57 3208 157 45 19 chr9 68605373 68605947 -49256680 + LTR26E LTR ERV1 2 590 -32 2947 115 23 42 chr9 68605970 68606588 -49256039 - MER4B LTR ERV1 0 779 1 21 0 0 0 chr9 68607421 68607442 -49255185 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr9 68610989 68611021 -49251606 + AT_rich Low_complexity Low_complexity 1 32 0 432 0 0 0 chr9 68611405 68611453 -49251174 + (TG)n Simple_repeat Simple_repeat 1 48 0 303 275 56 44 chr9 68611514 68611674 -49250953 - MIR SINE MIR -62 200 39 955 235 140 39 chr9 68612651 68613009 -49249618 - MSTD LTR MaLR 0 396 3 349 318 127 47 chr9 68613344 68613643 -49248984 - L2 LINE L2 0 3313 2991 849 111 0 0 chr9 68613740 68613857 -49248770 + AluSg/x SINE Alu 185 301 -8 207 313 93 40 chr9 68614387 68614537 -49248090 - L2 LINE L2 -1005 2309 2152 372 323 56 6 chr9 68614551 68614712 -49247915 + MIR SINE MIR 66 234 -28 3915 195 53 57 chr9 68614782 68615978 -49246649 + L1MB8 LINE L1 4244 5444 -734 1939 115 14 18 chr9 68615978 68616256 -49246371 + AluSc SINE Alu 18 294 -15 2122 112 0 11 chr9 68616256 68616566 -49246061 + AluSq SINE Alu 1 307 0 3915 195 53 57 chr9 68616566 68617312 -49245315 + L1MB8 LINE L1 5442 6178 0 327 214 67 0 chr9 68617437 68617526 -49245101 + L1ME3 LINE L1 5705 5799 -365 1704 139 68 17 chr9 68617574 68617869 -49244758 + AluSx SINE Alu 1 310 -2 322 175 16 0 chr9 68617924 68617987 -49244640 + L1ME3 LINE L1 6024 6087 -75 21 71 0 0 chr9 68618028 68618070 -49244557 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr9 68618613 68618634 -49243993 + AT_rich Low_complexity Low_complexity 1 21 0 1790 173 3 0 chr9 68619068 68619351 -49243276 + AluJo SINE Alu 1 284 -28 264 91 0 0 chr9 68619351 68619395 -49243232 + (CATA)n Simple_repeat Simple_repeat 2 45 0 365 270 93 46 chr9 68619653 68619912 -49242715 - HAL1 LINE L1 -840 1667 1397 688 223 16 0 chr9 68620856 68620977 -49241650 + FLAM_A SINE Alu 1 123 -10 1230 96 0 19 chr9 68621815 68622024 -49240603 - AluSc SINE Alu -17 292 1 2219 217 17 0 chr9 68622449 68622919 -49239708 - L1MB3 LINE L1 -1022 5124 4647 * 2480 155 56 74 chr9 68622915 68623001 -49239626 + L1MB3 LINE L1 5129 5215 -968 2195 115 7 3 chr9 68623001 68623296 -49239331 + AluSg SINE Alu 3 298 -12 2480 155 56 74 chr9 68623296 68623423 -49239204 + L1MB3 LINE L1 5215 5343 -840 789 197 8 0 chr9 68623423 68623555 -49239072 + FLAM_A SINE Alu 1 133 0 2480 155 56 74 chr9 68623555 68624003 -49238624 + L1MB3 LINE L1 5343 5793 -390 2090 162 65 41 chr9 68624005 68624418 -49238209 + MSTA LTR MaLR 1 423 -5 2289 145 10 13 chr9 68624426 68624812 -49237815 + L1MB3 LINE L1 5796 6180 -3 1338 107 0 11 chr9 68624954 68625141 -49237486 + L1PA8 LINE L1 5988 6172 0 450 231 140 7 chr9 68625321 68625464 -49237163 + MER33 DNA MER1_type 29 190 -134 270 0 0 0 chr9 68625620 68625650 -49236977 + (CA)n Simple_repeat Simple_repeat 2 31 0 1821 165 0 3 chr9 68625653 68625944 -49236683 - AluJb SINE Alu -22 290 1 2553 44 0 0 chr9 68625958 68626251 -49236376 - AluY SINE Alu -18 293 1 410 94 82 12 chr9 68626252 68626337 -49236290 + MER33 DNA MER1_type 249 339 -24 1410 228 48 169 chr9 68626353 68626665 -49235962 + Charlie7 DNA MER1_type 733 1081 -1531 1724 192 36 9 chr9 68626665 68626998 -49235629 + MER2 DNA MER2_type 1 342 -2 1410 228 48 169 chr9 68626998 68628206 -49234421 + Charlie7 DNA MER1_type 1081 2069 -543 751 290 122 44 chr9 68628208 68628682 -49233945 - L2 LINE L2 -253 3060 2560 1540 267 100 27 chr9 68628714 68629825 -49232802 + L2 LINE L2 2117 3313 0 283 360 90 49 chr9 68630297 68630766 -49231861 - L2 LINE L2 -707 2607 2120 352 357 30 17 chr9 68630802 68631037 -49231590 - L2 LINE L2 -1340 1974 1737 315 304 43 14 chr9 68632076 68632214 -49230413 - MIR SINE MIR -74 188 47 2495 60 0 3 chr9 68633126 68633426 -49229201 - AluY SINE Alu -2 309 11 2256 191 21 24 chr9 68633907 68634325 -49228302 - MER47B DNA MER2_type 0 418 2 573 287 104 33 chr9 68634427 68634821 -49227806 - L1MC/D LINE L1 -2070 5738 5317 429 282 55 22 chr9 68634860 68635041 -49227586 + MER5A DNA MER1_type 3 189 0 341 271 120 16 chr9 68635058 68635250 -49227377 - L1MC/D LINE L1 -895 5251 5040 234 0 0 0 chr9 68635735 68635761 -49226866 + (TG)n Simple_repeat Simple_repeat 1 26 0 871 227 143 18 chr9 68637047 68637333 -49225294 + MER33 DNA MER1_type 1 322 -2 24 0 0 0 chr9 68638192 68638216 -49224411 + AT_rich Low_complexity Low_complexity 1 24 0 287 255 21 117 chr9 68641762 68641907 -49220720 + MER5B DNA MER1_type 2 132 -46 888 153 127 28 chr9 68641926 68642210 -49220417 + MLT1A1 LTR MaLR 15 365 0 358 287 30 0 chr9 68642254 68642355 -49220272 + MER5A DNA MER1_type 9 112 -77 379 116 256 85 chr9 68642421 68642550 -49220077 - MER5A DNA MER1_type -8 181 31 222 319 44 71 chr9 68642803 68642916 -49219711 - MER91A DNA MER1_type -1 195 86 247 297 142 45 chr9 68642916 68643071 -49219556 - MER91A DNA MER1_type -26 170 1 802 228 23 12 chr9 68643326 68643497 -49219130 + MER5A DNA MER1_type 17 189 0 332 261 122 83 chr9 68644029 68644209 -49218418 - LTR16A LTR ERVL -181 269 83 648 219 16 0 chr9 68644262 68644390 -49218237 - MER5A DNA MER1_type 0 189 60 183 318 133 7 chr9 68645253 68645404 -49217223 + L2 LINE L2 705 874 -2440 196 266 141 0 chr9 68645616 68645680 -49216947 + L2 LINE L2 2622 2694 -620 320 362 52 20 chr9 68645706 68646012 -49216615 + L2 LINE L2 2766 3081 -232 2046 204 43 39 chr9 68646012 68646477 -49216150 + MLT1C LTR MaLR 1 467 0 1216 243 85 15 chr9 68646482 68646823 -49215804 + MLT1A1 LTR MaLR 1 365 0 5611 240 53 25 chr9 68647746 68650261 -49212366 + L1MB2 LINE L1 776 3321 -3061 2701 88 34 0 chr9 68650261 68650613 -49212014 - THE1B LTR MaLR 0 364 1 5611 240 53 25 chr9 68650613 68651045 -49211582 + L1MB2 LINE L1 3321 3739 -2643 1893 180 17 15 chr9 68651074 68651485 -49211142 + L1MCa LINE L1 902 1313 -5113 * 3747 170 41 94 chr9 68651477 68651970 -49210657 + L1MB2 LINE L1 5280 5798 -609 2473 90 0 0 chr9 68651970 68652282 -49210345 + AluSx SINE Alu 1 312 0 3747 170 41 94 chr9 68652282 68652970 -49209657 + L1MB2 LINE L1 5798 6393 -14 254 329 0 0 chr9 68653498 68653574 -49209053 - HAL1 LINE L1 -590 1917 1842 719 177 8 16 chr9 68653905 68654029 -49208598 + AluJo SINE Alu 23 145 -167 2459 205 62 17 chr9 68654031 68654073 -49208554 - L1MB3 LINE L1 -322 6359 6320 2196 115 0 10 chr9 68654073 68654369 -49208258 + AluSx SINE Alu 3 295 -17 2459 205 62 17 chr9 68654369 68655118 -49207509 - L1MB3 LINE L1 -361 6320 5537 254 49 0 24 chr9 68655121 68655162 -49207465 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 1468 110 5 14 chr9 68655171 68655380 -49207247 - AluSq SINE Alu -39 274 68 1919 141 30 0 chr9 68655381 68655686 -49206941 - L1PBa LINE L1 -6548 315 2 2130 261 37 29 chr9 68655699 68656622 -49206005 - L1MB3 LINE L1 -3224 3420 2477 21174 190 38 36 chr9 68656626 68659755 -49202872 - L1PA13 LINE L1 -4 7597 4476 2008 87 102 0 chr9 68659755 68660020 -49202607 - AluY SINE Alu -19 292 1 21174 190 38 36 chr9 68660020 68664459 -49198168 - L1PA13 LINE L1 -3125 4476 12 4427 230 107 29 chr9 68664471 68665438 -49197189 - L1MB3 LINE L1 -4164 2482 1592 2208 113 0 10 chr9 68665438 68665749 -49196878 - AluSx SINE Alu -2 310 3 4427 230 107 29 chr9 68665749 68666368 -49196259 - L1MB3 LINE L1 -5054 1592 548 329 336 63 21 chr9 68666720 68666958 -49195669 - L1MB3 LINE L1 -6293 249 2 2243 69 0 4 chr9 68667626 68667901 -49194726 + AluY SINE Alu 28 301 -10 233 270 133 87 chr9 68668096 68668770 -49193857 + HAL1b LINE L1 98 813 -535 2667 133 30 23 chr9 68668770 68669199 -49193428 + MSTB1 LTR MaLR 1 432 0 233 270 133 87 chr9 68669199 68669294 -49193333 + HAL1b LINE L1 813 902 -446 2938 140 9 16 chr9 68669388 68669825 -49192802 - MER57B LTR ERV1 0 434 1 568 144 21 37 chr9 68669825 68669943 -49192684 - MER57B-int LTR ERV1 0 7537 7026 514 256 63 63 chr9 68670049 68670099 -49192528 - MER57B-int LTR ERV1 -556 6981 6932 2333 102 0 0 chr9 68670099 68670403 -49192224 - AluSx SINE Alu -8 304 1 514 256 63 63 chr9 68670403 68670559 -49192068 - MER57B-int LTR ERV1 -604 6933 6817 1847 171 7 0 chr9 68671811 68672104 -49190523 + AluSx SINE Alu 1 295 -17 2175 290 51 68 chr9 68672311 68673086 -49189541 - MER57B-int LTR ERV1 -1346 6191 5404 2118 113 3 23 chr9 68673086 68673388 -49189239 - AluSq SINE Alu -17 296 1 2175 290 51 68 chr9 68673388 68675609 -49187018 - MER57B-int LTR ERV1 -2133 5404 543 227 182 73 0 chr9 68675609 68675664 -49186963 - MER41C LTR ERV1 -255 299 241 291 340 51 57 chr9 68676803 68677138 -49185489 - MER57B-int LTR ERV1 -5211 1590 1258 398 212 0 0 chr9 68677751 68677817 -49184810 - MER57B-int LTR ERV1 -7238 299 234 2655 132 57 19 chr9 68678017 68678435 -49184192 - MER57B LTR ERV1 0 434 1 2973 157 47 9 chr9 68678443 68678992 -49183635 - LTR49 LTR ERV1 -23 572 3 1939 112 31 14 chr9 68679224 68679511 -49183116 + AluSx SINE Alu 1 292 -20 182 224 0 41 chr9 68680491 68680540 -49182087 - MIR SINE MIR -67 141 95 229 324 81 29 chr9 68680839 68680975 -49181652 - MIR3 SINE MIR -21 187 45 180 0 0 0 chr9 68681026 68681046 -49181581 + (CA)n Simple_repeat Simple_repeat 2 21 0 21 0 0 0 chr9 68681242 68681263 -49181364 + AT_rich Low_complexity Low_complexity 1 21 0 619 234 58 13 chr9 68682293 68682447 -49180180 - MIR SINE MIR -38 224 64 44880 42 2 3 chr9 68683369 68688853 -49173774 + L1PA4 LINE L1 1 5479 -676 2372 51 0 0 chr9 68688853 68689128 -49173499 + AluY SINE Alu 36 310 -1 44880 42 2 3 chr9 68689128 68689804 -49172823 + L1PA4 LINE L1 5479 6154 -1 216 0 0 0 chr9 68689816 68689840 -49172787 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 1096 114 58 166 chr9 68690062 68690387 -49172240 - L1MA9 LINE L1 0 6323 6025 364 241 6 6 chr9 68691081 68691251 -49171376 + (TG)n Simple_repeat Simple_repeat 1 170 0 648 207 0 3 chr9 68691262 68691971 -49170656 + (TG)n Simple_repeat Simple_repeat 1 706 0 486 169 14 20 chr9 68692011 68692159 -49170468 + (TG)n Simple_repeat Simple_repeat 1 147 0 326 267 74 2 chr9 68692335 68692468 -49170159 + MIR SINE MIR 22 161 -62 2316 84 0 0 chr9 68693157 68693494 -49169133 - AluSq SINE Alu 0 337 1 670 236 13 6 chr9 68693634 68693791 -49168836 + MIR SINE MIR 57 214 -48 23 0 0 0 chr9 68694368 68694391 -49168236 + AT_rich Low_complexity Low_complexity 1 23 0 1598 61 20 94 chr9 68695445 68695690 -49166937 + L1PA13 LINE L1 5931 6157 -6 2021 185 22 25 chr9 68696003 68696409 -49166218 - L1MB3 LINE L1 0 6183 5779 222 37 0 0 chr9 68696621 68696648 -49165979 + (CA)n Simple_repeat Simple_repeat 1 27 0 519 291 102 69 chr9 68696870 68697321 -49165306 - L2 LINE L2 -2 3311 2846 980 77 0 0 chr9 68697419 68697549 -49165078 - AluY SINE Alu -8 303 174 628 329 131 17 chr9 68697554 68698144 -49164483 - L2 LINE L2 -567 2747 2091 231 274 69 51 chr9 68698247 68698422 -49164205 - L2 LINE L2 -1483 1831 1654 602 278 57 8 chr9 68698671 68698916 -49163711 - L2 LINE L2 -107 3206 2950 3480 192 38 30 chr9 68699625 68700338 -49162289 - MER72 LTR ERV1 0 722 4 1197 152 10 5 chr9 68700422 68700619 -49162008 - L1MB4 LINE L1 0 6180 5983 2274 128 0 0 chr9 68700710 68701022 -49161605 - AluSx SINE Alu 0 312 1 1245 191 30 4 chr9 68701126 68701361 -49161266 - LTR39 LTR ERV1 0 783 543 1738 203 45 21 chr9 68701370 68701750 -49160877 - LTR39 LTR ERV1 -394 389 1 294 265 15 0 chr9 68701792 68701860 -49160767 - MIR3 SINE MIR -17 191 123 4678 90 29 3 chr9 68702064 68702685 -49159942 + L1PA13 LINE L1 5527 6163 0 443 239 18 0 chr9 68703067 68703176 -49159451 + L1ME1 LINE L1 6054 6164 -2 731 232 7 0 chr9 68703487 68703638 -49158989 + L1MB1 LINE L1 6017 6168 0 330 232 151 104 chr9 68704146 68704291 -49158336 + HAL1 LINE L1 2216 2380 -127 1863 173 3 7 chr9 68704291 68704598 -49158029 + AluSx SINE Alu 1 306 -6 330 232 151 104 chr9 68704598 68704711 -49157916 + HAL1 LINE L1 2380 2486 -21 2652 154 31 2 chr9 68704935 68705351 -49157276 + MSTA LTR MaLR 1 428 0 254 320 34 63 chr9 68705783 68705989 -49156638 + MIR SINE MIR 25 224 -38 222 163 23 0 chr9 68706914 68706957 -49155670 + (TA)n Simple_repeat Simple_repeat 1 44 0 1956 234 61 10 chr9 68706966 68707559 -49155068 + L1MD2 LINE L1 2286 2908 -3238 573 125 0 0 chr9 68707568 68707640 -49154987 + AluJb SINE Alu 32 103 -209 3487 200 60 30 chr9 68707679 68708183 -49154444 + L1MD2 LINE L1 5520 6060 -299 2366 82 0 10 chr9 68708183 68708488 -49154139 + AluY SINE Alu 1 302 -9 3487 200 60 30 chr9 68708488 68708797 -49153830 + L1MD2 LINE L1 6060 6358 -1 2218 250 31 72 chr9 68708799 68709096 -49153531 + L1ME1 LINE L1 5289 5597 -569 1126 184 0 0 chr9 68709096 68709259 -49153368 + FAM SINE Alu 1 163 -12 2218 250 31 72 chr9 68709259 68709872 -49152755 + L1ME1 LINE L1 5597 6161 -5 1181 299 69 2 chr9 68709924 68710376 -49152251 + L1ME LINE L1 5280 5761 -409 301 265 29 20 chr9 68710421 68710523 -49152104 - MIR SINE MIR -128 134 32 377 313 67 30 chr9 68711054 68711322 -49151305 + L1ME LINE L1 448 725 -5394 3016 86 2 7 chr9 68711441 68711847 -49150780 - PABL_B LTR ERV1 0 667 219 614 85 0 0 chr9 68711861 68711943 -49150684 - PABL_B LTR ERV1 -585 82 1 493 301 137 30 chr9 68712110 68712542 -49150085 + L1ME LINE L1 4208 4685 -1444 219 105 35 70 chr9 68712586 68712643 -49149984 + (TTATA)n Simple_repeat Simple_repeat 3 57 0 823 91 0 2 chr9 68712646 68712889 -49149738 + AluSx SINE Alu 1 294 -18 2397 138 47 20 chr9 68713189 68713596 -49149031 + MSTA LTR MaLR 11 428 0 27 29 0 0 chr9 68714002 68714036 -49148591 + AT_rich Low_complexity Low_complexity 1 34 0 1759 189 0 0 chr9 68714036 68714321 -49148306 + AluSx SINE Alu 1 285 -27 279 311 66 31 chr9 68714448 68714676 -49147951 + L1ME LINE L1 5319 5554 -591 2231 101 0 1 chr9 68715227 68715535 -49147092 - L1PA8A LINE L1 -31 6131 5834 357 200 24 12 chr9 68717561 68717646 -49144981 + MER4D LTR ERV1 107 192 -711 1133 227 44 53 chr9 68717707 68718068 -49144559 + MER4D LTR ERV1 544 901 -2 1138 181 4 17 chr9 68718531 68718768 -49143859 + AluSq SINE Alu 1 234 -79 201 318 16 0 chr9 68718945 68719008 -49143619 + MIR SINE MIR 51 114 -148 546 301 6 0 chr9 68719118 68719274 -49143353 + MIR SINE MIR 2 158 -104 1725 187 126 28 chr9 68720740 68721136 -49141491 - MER66A LTR ERV1 0 478 44 14756 122 11 5 chr9 68721499 68723606 -49139021 - MER66A-int LTR ERV1 0 6676 4558 299 244 58 35 chr9 68723607 68723693 -49138934 - MER4D LTR ERV1 -712 160 73 999 207 118 17 chr9 68723707 68723944 -49138683 - MER4D-int LTR ERV1 -122 6636 6376 590 230 56 8 chr9 68723938 68724082 -49138545 - MER4D-int LTR ERV1 -628 6130 3950 * 273 160 0 0 chr9 68724083 68724133 -49138494 - MER66-int LTR ERV1 -1304 4642 4593 749 159 11 108 chr9 68724271 68724447 -49138180 - MER66-int LTR ERV1 -4176 3944 3786 287 303 57 16 chr9 68724579 68724701 -49137926 - MER66-int LTR ERV1 -2152 4179 4053 * 4079 165 38 42 chr9 68724696 68725689 -49136938 - MER66-int LTR ERV1 -2339 4337 3142 5464 224 16 19 chr9 68725690 68726831 -49135796 - MER66-int LTR ERV1 -3226 3450 2314 2898 158 9 7 chr9 68726802 68727250 -49135377 - MER66-int LTR ERV1 -4516 2160 1712 * 1563 224 162 3 chr9 68727258 68727646 -49134981 - MER66A LTR ERV1 0 478 29 3427 138 35 43 chr9 68728149 68728327 -49134300 - LTR49 LTR ERV1 0 595 417 1609 158 17 38 chr9 68728327 68728619 -49134008 - AluJo SINE Alu -26 286 1 3427 138 35 43 chr9 68728619 68729040 -49133587 - LTR49 LTR ERV1 -178 417 1 640 262 54 0 chr9 68729068 68729236 -49133391 + MIR SINE MIR 68 244 -18 681 289 149 9 chr9 68729766 68730102 -49132525 - LTR16C LTR ERVL -12 479 97 728 256 66 5 chr9 68730315 68730526 -49132101 + MIR SINE MIR 21 244 -18 431 247 101 57 chr9 68731540 68731763 -49130864 + MIR SINE MIR 34 262 0 292 375 73 0 chr9 68732667 68732859 -49129768 + MIR SINE MIR 57 262 0 368 229 139 16 chr9 68733473 68733595 -49129032 + MIR SINE MIR 31 167 -95 4212 232 60 27 chr9 68733749 68735490 -49127137 + L1ME1 LINE L1 3979 5775 -389 3136 218 33 36 chr9 68735582 68735751 -49126876 - MER21B LTR ERV1 -129 734 566 2183 73 0 28 chr9 68735751 68736074 -49126553 + AluSc SINE Alu 1 315 0 3136 218 33 36 chr9 68736074 68736628 -49125999 - MER21B LTR ERV1 -297 566 12 318 212 0 0 chr9 68736670 68736736 -49125891 + L1ME1 LINE L1 5841 5906 -264 308 178 9 93 chr9 68736740 68736847 -49125780 + L1ME1 LINE L1 5873 5970 -192 1157 124 11 23 chr9 68736848 68737025 -49125602 - AluSc SINE Alu -16 293 119 303 253 101 0 chr9 68737050 68737129 -49125498 + L1ME1 LINE L1 5990 6076 -90 2402 98 141 95 chr9 68737137 68737721 -49124906 - MER4B LTR ERV1 -5 774 1 2439 123 12 47 chr9 68737721 68738129 -49124498 - MER4B-int LTR ERV1 0 6758 6365 2069 103 37 0 chr9 68738220 68738523 -49124104 + AluSg SINE Alu 1 313 0 5585 125 37 37 chr9 68738523 68739331 -49123296 - MER4B-int LTR ERV1 -441 6317 5507 5108 52 3 3 chr9 68739331 68739921 -49122706 - LTR10C LTR ERV1 -1 590 1 5585 125 37 37 chr9 68739921 68740059 -49122568 - MER4B-int LTR ERV1 -1250 5508 5371 250 290 97 45 chr9 68740063 68740218 -49122409 + L2 LINE L2 3146 3308 -5 2265 119 3 0 chr9 68740413 68740715 -49121912 - AluSp SINE Alu -10 303 1 2444 207 115 40 chr9 68740824 68741496 -49121131 - MER72 LTR ERV1 0 722 1 2147 194 16 11 chr9 68742080 68742514 -49120113 + MER45B DNA AcHobo 604 1039 -1 1271 205 186 35 chr9 68742537 68742962 -49119665 - MLT1H1 LTR MaLR 0 555 67 601 233 30 0 chr9 68742966 68743099 -49119528 - MIR SINE MIR -124 138 2 355 256 141 50 chr9 68743659 68743921 -49118706 + L1ME LINE L1 4734 5019 -1127 1982 122 21 7 chr9 68743925 68744212 -49118415 + AluSg SINE Alu 1 291 -19 231 265 37 22 chr9 68744424 68744571 -49118056 + L1P5 LINE L1 5309 5456 -698 326 275 145 8 chr9 68744712 68744843 -49117784 - MER91A DNA MER1_type -27 169 21 496 287 73 33 chr9 68744845 68745117 -49117510 + L1ME LINE L1 5537 5819 -302 24 32 0 0 chr9 68745298 68745329 -49117298 + AT_rich Low_complexity Low_complexity 1 31 0 4191 236 73 68 chr9 68746606 68747953 -49114674 + L1M4 LINE L1 10 1367 -5492 2245 124 0 6 chr9 68747953 68748267 -49114360 - AluSx SINE Alu 0 312 1 4191 236 73 68 chr9 68748267 68748417 -49114210 + L1M4 LINE L1 1367 1515 -5344 3224 119 55 18 chr9 68748417 68749010 -49113617 - MER4B LTR ERV1 0 779 1 22 35 0 0 chr9 68749982 68750011 -49112616 + AT_rich Low_complexity Low_complexity 1 29 0 1484 234 75 41 chr9 68751496 68751937 -49110690 + MLT2B1 LTR ERVL 1 456 -64 1366 92 31 62 chr9 68752361 68752405 -49110222 + L1PB1 LINE L1 5929 5973 -178 2273 108 0 3 chr9 68752405 68752710 -49109917 + AluSp SINE Alu 1 304 -9 1366 92 31 62 chr9 68752710 68752892 -49109735 + L1PB1 LINE L1 5973 6148 -3 269 280 89 54 chr9 68754547 68754745 -49107882 + L1M4 LINE L1 3800 3990 -2967 2189 113 3 0 chr9 68754745 68755046 -49107581 - AluSq SINE Alu -11 302 1 269 280 89 54 chr9 68755046 68755219 -49107408 + L1M4 LINE L1 3990 4184 -2773 867 124 193 98 chr9 68755662 68756034 -49106593 - MER4C LTR ERV1 0 465 265 1573 231 44 0 chr9 68756452 68756790 -49105837 + MLT2B1 LTR ERVL 1 353 -167 230 363 38 12 chr9 68756812 68756972 -49105655 - L2 LINE L2 -1424 1890 1727 271 184 41 10 chr9 68759013 68759111 -49103516 + (TATG)n Simple_repeat Simple_repeat 2 102 0 271 246 8 66 chr9 68759118 68759240 -49103387 + (TATATG)n Simple_repeat Simple_repeat 4 118 0 300 206 14 34 chr9 68759257 68759403 -49103224 + (TATATG)n Simple_repeat Simple_repeat 2 144 0 500 246 119 41 chr9 68760193 68760666 -49101961 + MLT1H LTR MaLR 2 549 0 211 286 110 22 chr9 68760819 68760910 -49101717 + MIR SINE MIR 66 164 -98 704 171 44 32 chr9 68761285 68761443 -49101184 - MER115 DNA AcHobo -7 686 527 3440 126 132 57 chr9 68761443 68762392 -49100235 + pTR5 LTR ERV1 750 2021 -417 296 245 31 20 chr9 68762396 68762494 -49100133 + LTR30 LTR ERV1 544 642 -80 1542 89 19 5 chr9 68762501 68762714 -49099913 + pTR5 LTR ERV1 175 390 -2048 445 291 104 26 chr9 68762724 68762954 -49099673 - MER115 DNA AcHobo -167 526 279 192 333 42 58 chr9 68763048 68763168 -49099459 + L3 LINE CR1 1459 1576 -1 484 222 0 89 chr9 68763461 68763596 -49099031 - MER94 DNA DNA -10 124 2 249 159 0 0 chr9 68764159 68764203 -49098424 + T-rich Low_complexity Low_complexity 1 44 0 255 202 71 40 chr9 68764319 68764418 -49098209 - L1M4 LINE L1 -2194 3952 3851 2792 247 58 28 chr9 68764788 68765338 -49097289 + L1MD1 LINE L1 3843 4438 -1708 1637 202 85 6 chr9 68765338 68765655 -49096972 - MER61A LTR ERV1 0 343 2 2792 247 58 28 chr9 68765655 68766113 -49096514 + L1MD1 LINE L1 4438 4881 -1265 2175 105 10 38 chr9 68766115 68766429 -49096198 + AluSx SINE Alu 1 305 -7 4084 187 36 20 chr9 68766435 68767065 -49095562 + L1MD1 LINE L1 4966 5620 -622 2007 127 3 3 chr9 68767065 68767378 -49095249 + AluSx SINE Alu 1 313 0 4084 187 36 20 chr9 68767378 68767807 -49094820 + L1MD1 LINE L1 5620 6041 -201 1121 120 0 6 chr9 68767807 68767965 -49094662 + AluSq SINE Alu 1 157 -156 1655 219 84 47 chr9 68768074 68768540 -49094087 + MLT1D LTR MaLR 21 503 -2 2206 232 32 63 chr9 68768540 68769222 -49093405 + MLT1D-int LTR MaLR 1 661 -710 289 271 71 24 chr9 68769262 68769347 -49093280 + MLT1D-int LTR MaLR 662 750 -621 978 229 69 34 chr9 68769614 68769876 -49092751 + MLT1D-int LTR MaLR 939 1209 -162 1575 177 26 12 chr9 68769877 68770186 -49092441 - MER41B LTR ERV1 -12 597 314 1895 93 8 8 chr9 68770186 68770454 -49092173 + THE1C-int LTR MaLR 1313 1580 0 2356 120 18 37 chr9 68770454 68770836 -49091791 + THE1C LTR MaLR 1 375 0 7695 132 36 11 chr9 68770927 68771910 -49090717 - THE1C-int LTR MaLR -371 1209 191 4071 86 4 4 chr9 68771910 68772421 -49090206 - MER9 LTR ERVK 0 511 1 7695 132 36 11 chr9 68772421 68772617 -49090010 - THE1C-int LTR MaLR -1389 191 1 1996 165 46 30 chr9 68772617 68772986 -49089641 - THE1C LTR MaLR 0 375 1 398 250 127 5 chr9 68773090 68773357 -49089270 - LTR48 LTR ERV1 -309 478 157 994 222 200 55 chr9 68773488 68774599 -49088028 + SATR1 Satellite Satellite 1 1272 -404 1976 133 7 3 chr9 68776298 68776600 -49086027 + AluSq SINE Alu 1 303 -10 183 319 44 26 chr9 68776654 68776767 -49085860 - L2 LINE L2 0 3272 3158 2270 103 0 6 chr9 68777154 68777466 -49085161 - AluSg SINE Alu 0 310 1 250 332 56 23 chr9 68777865 68778079 -49084548 + MIR SINE MIR 32 252 -10 212 158 0 0 chr9 68778098 68778136 -49084491 + (CAT)n Simple_repeat Simple_repeat 3 40 0 2974 234 25 41 chr9 68778908 68779160 -49083467 - L1MB3 LINE L1 -30 6153 5899 1999 158 0 0 chr9 68779160 68779464 -49083163 - AluSx SINE Alu -8 304 1 2974 234 25 41 chr9 68779464 68779575 -49083052 - L1MB3 LINE L1 -284 5899 5788 1990 129 3 7 chr9 68779575 68779588 -49083039 - AluSx SINE Alu -10 302 290 252 0 0 0 chr9 68779588 68779616 -49083011 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 1990 129 3 7 chr9 68779616 68779905 -49082722 - AluSx SINE Alu -22 290 1 2974 234 25 41 chr9 68779905 68780896 -49081731 - L1MB3 LINE L1 -395 5788 4819 2140 120 3 3 chr9 68780942 68781250 -49081377 + AluSp SINE Alu 1 308 -5 1391 199 3 82 chr9 68781330 68781537 -49081090 - L1MA4 LINE L1 -170 6130 5967 1852 141 11 0 chr9 68781537 68781814 -49080813 - AluSx SINE Alu -32 280 1 1391 199 3 82 chr9 68781814 68781997 -49080630 - L1MA4 LINE L1 -333 5967 5771 313 218 134 56 chr9 68782039 68782181 -49080446 + HsTC2 DNA Tc2 1631 1783 -115 2034 113 3 77 chr9 68782186 68782523 -49080104 + AluSp SINE Alu 1 312 -1 353 212 35 0 chr9 68782746 68782831 -49079796 + MER5B DNA MER1_type 87 174 -4 705 242 40 0 chr9 68782933 68783131 -49079496 - MER6B DNA MER2_type 0 210 5 1392 130 27 22 chr9 68785029 68785252 -49077375 + AluSq SINE Alu 1 224 -89 2021 194 141 7 chr9 68785254 68785912 -49076715 + SATR1 Satellite Satellite 1 746 -1 2305 179 110 16 chr9 68785943 68787408 -49075219 + SATR1 Satellite Satellite 1 1602 -20 29243 92 15 12 chr9 68787409 68791452 -49071175 - HERVE LTR ERV1 -2649 5164 1108 303 168 8 64 chr9 68791506 68791631 -49070996 + (TAA)n Simple_repeat Simple_repeat 1 118 0 29 78 0 0 chr9 68791689 68791753 -49070874 + AT_rich Low_complexity Low_complexity 1 64 0 2212 194 117 11 chr9 68791808 68793865 -49068762 - SATR1 Satellite Satellite 0 2274 1 23 54 0 0 chr9 68793868 68793905 -49068722 + AT_rich Low_complexity Low_complexity 1 37 0 343 225 11 50 chr9 68793958 68794140 -49068487 + (TAA)n Simple_repeat Simple_repeat 2 176 0 1789 220 101 42 chr9 68794234 68795379 -49067248 + SATR1 Satellite Satellite 1 1212 0 1730 187 126 28 chr9 68795512 68795908 -49066719 - MER66A LTR ERV1 0 478 44 14813 121 11 5 chr9 68796175 68798282 -49064345 - MER66A-int LTR ERV1 0 6676 4558 294 244 58 35 chr9 68798283 68798369 -49064258 - MER4D LTR ERV1 -712 160 73 986 207 118 17 chr9 68798383 68798620 -49064007 - MER4D-int LTR ERV1 -122 6636 6376 590 230 56 8 chr9 68798614 68798758 -49063869 - MER4D-int LTR ERV1 -628 6130 3950 * 269 160 0 0 chr9 68798759 68798809 -49063818 - MER66-int LTR ERV1 -1304 4642 4593 746 159 11 108 chr9 68798947 68799123 -49063504 - MER66-int LTR ERV1 -4176 3944 3786 279 303 57 16 chr9 68799255 68799377 -49063250 - MER66-int LTR ERV1 -2152 4179 4053 * 4034 166 38 39 chr9 68799372 68800361 -49062266 - MER66-int LTR ERV1 -2339 4337 3142 5493 223 16 19 chr9 68800362 68801503 -49061124 - MER66-int LTR ERV1 -3226 3450 2314 2875 161 9 7 chr9 68801474 68801922 -49060705 - MER66-int LTR ERV1 -4516 2160 1712 * 1569 224 162 3 chr9 68801930 68802318 -49060309 - MER66A LTR ERV1 0 478 29 3237 138 35 43 chr9 68802821 68802999 -49059628 - LTR49 LTR ERV1 0 595 417 1627 158 17 38 chr9 68802999 68803291 -49059336 - AluJo SINE Alu -26 286 1 3237 138 35 43 chr9 68803291 68803712 -49058915 - LTR49 LTR ERV1 -178 417 1 598 244 56 0 chr9 68803740 68803900 -49058727 + MIR SINE MIR 68 236 -26 711 286 149 9 chr9 68804438 68804774 -49057853 - LTR16C LTR ERVL -12 479 97 666 256 66 5 chr9 68804987 68805198 -49057429 + MIR SINE MIR 21 244 -18 376 246 108 54 chr9 68806232 68806435 -49056192 + MIR SINE MIR 49 262 0 248 375 73 0 chr9 68807339 68807531 -49055096 + MIR SINE MIR 57 262 0 369 253 182 12 chr9 68808145 68808315 -49054312 + MIR SINE MIR 31 229 -33 4117 229 63 31 chr9 68808421 68810163 -49052464 + L1ME1 LINE L1 3979 5775 -389 3107 214 36 39 chr9 68810255 68810424 -49052203 - MER21B LTR ERV1 -129 734 566 2210 73 0 28 chr9 68810424 68810751 -49051876 + AluSc SINE Alu 1 319 0 3107 214 36 39 chr9 68810751 68811305 -49051322 - MER21B LTR ERV1 -297 566 12 317 212 0 0 chr9 68811347 68811413 -49051214 + L1ME1 LINE L1 5841 5906 -264 280 187 9 93 chr9 68811417 68811524 -49051103 + L1ME1 LINE L1 5873 5970 -192 1171 124 11 22 chr9 68811525 68811703 -49050924 - AluSc SINE Alu -15 294 119 305 253 101 0 chr9 68811729 68811808 -49050819 + L1ME1 LINE L1 5990 6076 -90 2400 98 141 95 chr9 68811816 68812400 -49050227 - MER4B LTR ERV1 -5 774 1 2436 123 12 47 chr9 68812400 68812808 -49049819 - MER4B-int LTR ERV1 0 6758 6365 2110 99 37 0 chr9 68812897 68813196 -49049431 + AluSg SINE Alu 1 309 0 5539 123 37 37 chr9 68813196 68814004 -49048623 - MER4B-int LTR ERV1 -441 6317 5507 4884 52 3 3 chr9 68814004 68814594 -49048033 - LTR10C LTR ERV1 -1 590 1 5539 123 37 37 chr9 68814594 68814732 -49047895 - MER4B-int LTR ERV1 -1250 5508 5371 201 254 200 31 chr9 68814736 68814866 -49047761 + L2 LINE L2 3146 3297 -16 2205 113 3 0 chr9 68815084 68815396 -49047231 - AluSp SINE Alu 0 313 1 2238 214 112 37 chr9 68815505 68816177 -49046450 - MER72 LTR ERV1 0 722 1 2133 191 16 11 chr9 68816761 68817195 -49045432 + MER45B DNA AcHobo 604 1039 -1 1277 205 186 35 chr9 68817218 68817643 -49044984 - MLT1H1 LTR MaLR 0 555 67 559 233 30 0 chr9 68817647 68817780 -49044847 - MIR SINE MIR -124 138 2 334 252 141 50 chr9 68818341 68818603 -49044024 + L1ME LINE L1 4734 5019 -1127 1998 122 21 7 chr9 68818607 68818894 -49043733 + AluSg SINE Alu 1 291 -19 317 241 37 46 chr9 68819145 68819253 -49043374 + L1ME LINE L1 5347 5453 -668 276 241 170 9 chr9 68819413 68819525 -49043102 - MER91A DNA MER1_type -46 150 21 481 287 73 33 chr9 68819527 68819799 -49042828 + L1ME LINE L1 5537 5819 -302 24 32 0 0 chr9 68819980 68820011 -49042616 + AT_rich Low_complexity Low_complexity 1 31 0 4222 235 73 68 chr9 68821288 68822634 -49039993 + L1MB8 LINE L1 10 1367 -5492 2264 124 0 6 chr9 68822634 68822948 -49039679 - AluSx SINE Alu 0 312 1 4222 235 73 68 chr9 68822948 68823098 -49039529 + L1MB8 LINE L1 1367 1515 -5344 3185 120 53 19 chr9 68823098 68823693 -49038934 - MER4B LTR ERV1 0 779 1 1017 212 103 2 chr9 68823699 68823992 -49038635 + L1MB8 LINE L1 5261 5577 -1380 3808 164 54 28 chr9 68824003 68824712 -49037915 - LTR8A LTR ERV1 0 727 1 6023 19 1 0 chr9 68824712 68825460 -49037167 + L1PA3 LINE L1 5457 6205 0 2488 187 84 9 chr9 68825465 68826511 -49036116 + L1MB8 LINE L1 5583 6703 -286 1051 179 36 31 chr9 68826674 68826897 -49035730 + AluSq SINE Alu 1 224 -89 2021 194 141 7 chr9 68826899 68827557 -49035070 + SATR1 Satellite Satellite 1 746 -1 2299 182 110 15 chr9 68827588 68829054 -49033573 + SATR1 Satellite Satellite 1 1604 -20 29031 93 15 11 chr9 68829055 68833098 -49029529 - HERVE LTR ERV1 -2649 5164 1108 303 168 8 64 chr9 68833152 68833277 -49029350 + (TAA)n Simple_repeat Simple_repeat 1 118 0 29 78 0 0 chr9 68833335 68833399 -49029228 + AT_rich Low_complexity Low_complexity 1 64 0 2206 194 117 11 chr9 68833454 68835511 -49027116 - SATR1 Satellite Satellite 0 2274 1 23 54 0 0 chr9 68835514 68835551 -49027076 + AT_rich Low_complexity Low_complexity 1 37 0 343 225 11 50 chr9 68835604 68835786 -49026841 + (TAA)n Simple_repeat Simple_repeat 2 176 0 1796 220 105 48 chr9 68835880 68837025 -49025602 + SATR1 Satellite Satellite 1 1210 0 1725 187 126 28 chr9 68837158 68837554 -49025073 - MER66A LTR ERV1 0 478 44 14764 121 11 5 chr9 68837789 68839895 -49022732 - MER66A-int LTR ERV1 0 6676 4558 299 244 58 35 chr9 68839896 68839982 -49022645 - MER4D LTR ERV1 -712 160 73 999 207 118 17 chr9 68839996 68840233 -49022394 - MER4D-int LTR ERV1 -122 6636 6376 590 230 56 8 chr9 68840227 68840371 -49022256 - MER4D-int LTR ERV1 -628 6130 3950 * 273 160 0 0 chr9 68840372 68840422 -49022205 - MER66-int LTR ERV1 -1304 4642 4593 749 159 11 108 chr9 68840560 68840736 -49021891 - MER66-int LTR ERV1 -4176 3944 3786 287 303 57 16 chr9 68840868 68840990 -49021637 - MER66-int LTR ERV1 -2152 4179 4053 * 4091 166 38 39 chr9 68840985 68841974 -49020653 - MER66-int LTR ERV1 -2339 4337 3142 5489 223 16 19 chr9 68841975 68843116 -49019511 - MER66-int LTR ERV1 -3226 3450 2314 2872 161 9 7 chr9 68843087 68843535 -49019092 - MER66-int LTR ERV1 -4516 2160 1712 * 1563 224 162 3 chr9 68843543 68843931 -49018696 - MER66A LTR ERV1 0 478 29 3427 138 35 43 chr9 68844434 68844612 -49018015 - LTR49 LTR ERV1 0 595 417 1609 158 17 38 chr9 68844612 68844904 -49017723 - AluJo SINE Alu -26 286 1 3427 138 35 43 chr9 68844904 68845325 -49017302 - LTR49 LTR ERV1 -178 417 1 640 262 54 0 chr9 68845353 68845521 -49017106 + MIR SINE MIR 68 244 -18 686 280 152 12 chr9 68846051 68846387 -49016240 - LTR16C LTR ERVL -12 479 97 728 256 66 5 chr9 68846600 68846811 -49015816 + MIR SINE MIR 21 244 -18 431 247 101 57 chr9 68847825 68848048 -49014579 + MIR SINE MIR 34 262 0 292 375 73 0 chr9 68848952 68849144 -49013483 + MIR SINE MIR 57 262 0 422 253 182 12 chr9 68849758 68849928 -49012699 + MIR SINE MIR 31 229 -33 4243 232 60 28 chr9 68850034 68851776 -49010851 + L1ME1 LINE L1 3979 5775 -389 3109 221 33 36 chr9 68851868 68852037 -49010590 - MER21B LTR ERV1 -129 734 566 2183 73 0 28 chr9 68852037 68852364 -49010263 + AluSc SINE Alu 1 319 0 3109 221 33 36 chr9 68852364 68852918 -49009709 - MER21B LTR ERV1 -297 566 12 318 212 0 0 chr9 68852960 68853026 -49009601 + L1ME1 LINE L1 5841 5906 -264 287 187 9 93 chr9 68853030 68853137 -49009490 + L1ME1 LINE L1 5873 5970 -192 1164 124 11 22 chr9 68853138 68853316 -49009311 - AluSc SINE Alu -15 294 119 303 253 101 0 chr9 68853342 68853421 -49009206 + L1ME1 LINE L1 5990 6076 -90 2406 98 141 95 chr9 68853429 68854013 -49008614 - MER4B LTR ERV1 -5 774 1 2439 123 12 47 chr9 68854013 68854421 -49008206 - MER4B-int LTR ERV1 0 6758 6365 2092 99 37 0 chr9 68854510 68854809 -49007818 + AluSg SINE Alu 1 309 0 5576 123 37 37 chr9 68854809 68855617 -49007010 - MER4B-int LTR ERV1 -441 6317 5507 5108 52 3 3 chr9 68855617 68856207 -49006420 - LTR10C LTR ERV1 -1 590 1 5576 123 37 37 chr9 68856207 68856345 -49006282 - MER4B-int LTR ERV1 -1250 5508 5371 250 290 97 45 chr9 68856349 68856504 -49006123 + L2 LINE L2 3146 3308 -5 2185 113 3 0 chr9 68856697 68857009 -49005618 - AluSp SINE Alu 0 313 1 2444 207 115 40 chr9 68857118 68857790 -49004837 - MER72 LTR ERV1 0 722 1 2164 191 16 11 chr9 68858374 68858808 -49003819 + MER45B DNA AcHobo 604 1039 -1 1271 205 186 35 chr9 68858831 68859256 -49003371 - MLT1H1 LTR MaLR 0 555 67 601 233 30 0 chr9 68859260 68859393 -49003234 - MIR SINE MIR -124 138 2 355 256 141 50 chr9 68859954 68860216 -49002411 + L1ME LINE L1 4734 5019 -1127 1982 122 21 7 chr9 68860220 68860507 -49002120 + AluSg SINE Alu 1 291 -19 231 265 37 22 chr9 68860719 68860866 -49001761 + L1P5 LINE L1 5309 5456 -698 326 275 145 8 chr9 68861007 68861138 -49001489 - MER91A DNA MER1_type -27 169 21 496 287 73 33 chr9 68861140 68861412 -49001215 + L1ME LINE L1 5537 5819 -302 24 32 0 0 chr9 68861593 68861624 -49001003 + AT_rich Low_complexity Low_complexity 1 31 0 4191 235 73 68 chr9 68862901 68864248 -48998379 + L1MB8 LINE L1 10 1367 -5492 2245 124 0 6 chr9 68864248 68864562 -48998065 - AluSx SINE Alu 0 312 1 4191 235 73 68 chr9 68864562 68864712 -48997915 + L1MB8 LINE L1 1367 1515 -5344 3216 119 55 18 chr9 68864712 68865305 -48997322 - MER4B LTR ERV1 0 779 1 1017 212 103 2 chr9 68865311 68865604 -48997023 + L1MB8 LINE L1 5261 5577 -1380 3808 164 54 28 chr9 68865615 68866324 -48996303 - LTR8A LTR ERV1 0 727 1 6023 19 1 0 chr9 68866324 68867072 -48995555 + L1PA3 LINE L1 5457 6205 0 4182 182 43 37 chr9 68867077 68868337 -48994290 + L1MB8 LINE L1 5583 6855 -134 722 196 0 15 chr9 68868337 68868470 -48994157 + FLAM_C SINE Alu 3 133 0 4182 182 43 37 chr9 68868470 68868605 -48994022 + L1MB8 LINE L1 6855 6988 -1 24 0 0 0 chr9 68868714 68868738 -48993889 + AT_rich Low_complexity Low_complexity 1 24 0 265 325 16 41 chr9 68868913 68869036 -48993591 - MIR SINE MIR -73 135 16 21 36 0 0 chr9 68869385 68869413 -48993214 + AT_rich Low_complexity Low_complexity 1 28 0 1144 156 146 0 chr9 68869628 68869833 -48992794 + AluSx SINE Alu 60 294 -18 642 148 9 9 chr9 68871170 68871278 -48991349 + L1MC1 LINE L1 6056 6163 -170 2227 88 30 3 chr9 68871314 68871611 -48991016 + AluSq SINE Alu 1 305 -8 1445 290 72 11 chr9 68871634 68872385 -48990242 + HAL1b LINE L1 311 1107 -241 4183 166 13 34 chr9 68872606 68873607 -48989020 - L1MC1 LINE L1 0 6333 5386 2402 70 0 10 chr9 68873608 68873906 -48988721 + AluY SINE Alu 1 295 -16 3098 98 14 0 chr9 68874242 68874670 -48987957 + MER57B LTR ERV1 1 434 0 248 254 0 0 chr9 68877523 68877582 -48985045 - Tigger4(Zombi) DNA MER2_type -17 2714 2656 664 260 37 80 chr9 68877600 68877900 -48984727 - MER46C DNA MER2_type -43 295 9 1031 194 122 0 chr9 68878067 68878304 -48984323 - LTR65 LTR ERV1 -403 266 1 335 303 94 47 chr9 68879656 68880167 -48982460 - HAL1 LINE L1 -135 2372 1838 949 140 0 0 chr9 68880218 68880361 -48982266 - FLAM_C SINE Alu 0 143 1 269 222 278 0 chr9 68883099 68883189 -48979438 - MIR3 SINE MIR -43 165 51 1271 220 30 69 chr9 68883944 68884349 -48978278 - MLT1B LTR MaLR -1 389 1 391 328 96 56 chr9 68884729 68885137 -48977490 + L1MC4a LINE L1 4878 5301 -845 293 284 221 26 chr9 68885156 68885427 -48977200 + L1MC4a LINE L1 5569 5892 -1916 1734 175 0 25 chr9 68885462 68885782 -48976845 + AluJb SINE Alu 1 312 0 360 0 0 0 chr9 68886568 68886608 -48976019 + (TG)n Simple_repeat Simple_repeat 1 40 0 265 308 58 8 chr9 68887378 68887498 -48975129 + MIR SINE MIR 127 252 -10 449 194 46 125 chr9 68888141 68888357 -48974270 - MER3 DNA MER1_type -4 205 7 311 65 22 0 chr9 68888647 68888693 -48973934 + (CA)n Simple_repeat Simple_repeat 2 48 0 194 306 0 0 chr9 68889810 68889859 -48972768 - MER5B DNA MER1_type -129 49 1 226 49 24 24 chr9 68889879 68889920 -48972707 + (TTTTG)n Simple_repeat Simple_repeat 3 43 0 227 254 28 28 chr9 68890266 68890337 -48972290 - HAL1b LINE L1 -867 481 411 2157 173 22 2 chr9 68890352 68890847 -48971780 - L1MA7 LINE L1 -4 6287 5676 1149 81 43 0 chr9 68890847 68890886 -48971741 - MER30 DNA MER1_type -62 168 132 216 0 0 0 chr9 68890886 68890910 -48971717 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1149 81 43 0 chr9 68890910 68891031 -48971596 - MER30 DNA MER1_type -98 132 1 244 289 86 13 chr9 68891040 68891192 -48971435 - HAL1b LINE L1 -1065 283 121 342 0 0 0 chr9 68891672 68891710 -48970917 + (TG)n Simple_repeat Simple_repeat 1 38 0 294 73 0 0 chr9 68891710 68891751 -48970876 + (GA)n Simple_repeat Simple_repeat 2 42 0 192 320 180 39 chr9 68892513 68892641 -48969986 - MIR SINE MIR -56 206 61 1639 222 64 78 chr9 68893071 68893197 -48969430 - MER82 DNA MER2_type -2 651 525 2759 81 3 8 chr9 68893197 68893554 -48969073 - THE1A LTR MaLR 0 355 1 11910 96 2 3 chr9 68893555 68895134 -48967493 - THE1A-int LTR MaLR -2 1578 1 2545 86 47 0 chr9 68895134 68895473 -48967154 - THE1A LTR MaLR 0 355 1 1639 222 64 78 chr9 68895473 68895871 -48966756 - MER82 DNA MER2_type -126 527 131 711 260 49 31 chr9 68896824 68897047 -48965580 + L1MCb LINE L1 337 563 -5482 7965 231 38 21 chr9 68897084 68899404 -48963223 + L1M4 LINE L1 2397 4757 -1389 540 201 182 7 chr9 68899835 68899989 -48962638 - MER5A DNA MER1_type -4 185 5 449 281 58 42 chr9 68900096 68900288 -48962339 + MIR SINE MIR 33 228 -34 26 0 0 0 chr9 68902143 68902169 -48960458 + GC_rich Low_complexity Low_complexity 1 26 0 208 266 109 103 chr9 68902876 68902922 -48959705 - MER5A DNA MER1_type 0 189 145 2106 105 3 3 chr9 68902922 68903217 -48959410 + AluSg SINE Alu 1 295 -15 208 266 109 103 chr9 68903217 68903354 -48959273 - MER5A DNA MER1_type -44 145 5 255 325 25 12 chr9 68903567 68903647 -48958980 + L2 LINE L2 3233 3313 0 2479 63 0 0 chr9 68904495 68904798 -48957829 - AluY SINE Alu -8 303 1 3236 208 25 11 chr9 68905505 68906146 -48956481 - MER82 DNA MER2_type -3 650 1 1825 229 112 16 chr9 68906667 68907160 -48955467 - MLT1F LTR MaLR 0 542 3 216 247 11 56 chr9 68907231 68907320 -48955307 - L2 LINE L2 -70 3243 3159 1429 161 27 0 chr9 68908557 68908781 -48953846 - MER30 DNA MER1_type 0 230 1 1000 194 18 53 chr9 68908832 68909059 -48953568 + MER20 DNA MER1_type 1 219 0 4010 156 67 24 chr9 68909770 68909921 -48952706 + Tigger2 DNA MER2_type 4 147 -2571 2273 78 3 10 chr9 68909921 68910229 -48952398 + AluY SINE Alu 1 306 -5 4010 156 67 24 chr9 68910229 68910839 -48951788 + Tigger2 DNA MER2_type 147 798 -1920 1466 136 52 12 chr9 68910861 68911112 -48951515 + Tigger2 DNA MER2_type 2458 2718 0 244 275 108 8 chr9 68911595 68911715 -48950912 - L2 LINE L2 -666 2648 2517 399 302 40 58 chr9 68911876 68912101 -48950526 - L2 LINE L2 -835 2479 2259 391 281 37 69 chr9 68912119 68912336 -48950291 - L2 LINE L2 -11 3302 3093 631 102 0 0 chr9 68914396 68914484 -48948143 + AluY SINE Alu 45 132 -179 250 161 21 65 chr9 68914916 68915009 -48947618 + (GTGTG)n Simple_repeat Simple_repeat 1 89 0 400 86 35 63 chr9 68915018 68915192 -48947435 + (TG)n Simple_repeat Simple_repeat 2 170 0 334 112 22 73 chr9 68915238 68915417 -48947210 + (TG)n Simple_repeat Simple_repeat 2 171 0 422 93 44 58 chr9 68915458 68915802 -48946825 + (TG)n Simple_repeat Simple_repeat 1 339 0 319 80 43 58 chr9 68915846 68915984 -48946643 + (TG)n Simple_repeat Simple_repeat 2 137 0 394 85 48 55 chr9 68916003 68916168 -48946459 + (TG)n Simple_repeat Simple_repeat 2 165 0 188 23 47 47 chr9 68916231 68916274 -48946353 + (TG)n Simple_repeat Simple_repeat 1 43 0 279 119 32 65 chr9 68916386 68916571 -48946056 + (TG)n Simple_repeat Simple_repeat 1 179 0 360 0 0 0 chr9 68916675 68916715 -48945912 + (TG)n Simple_repeat Simple_repeat 2 41 0 331 311 105 33 chr9 68918550 68918844 -48943783 - L1MC4a LINE L1 -1890 5918 5600 2235 110 0 0 chr9 68918844 68919152 -48943475 - AluSx SINE Alu -4 308 1 594 107 53 167 chr9 68920441 68920591 -48942036 + FLAM_A SINE Alu 1 133 0 445 282 235 8 chr9 68922622 68922984 -48939643 - L2 LINE L2 -34 3279 2836 473 287 37 27 chr9 68923631 68923819 -48938808 + MIR SINE MIR 40 229 -33 27 20 0 41 chr9 68924131 68924153 -48938474 + AT_rich Low_complexity Low_complexity 1 22 -25 2093 102 3 3 chr9 68924153 68924438 -48938189 + AluSc SINE Alu 1 285 -24 27 20 0 41 chr9 68924438 68924464 -48938163 + AT_rich Low_complexity Low_complexity 22 47 0 898 224 58 21 chr9 68925721 68926123 -48936504 - MER69 DNA AcHobo -1 2525 2052 328 266 105 8 chr9 68926120 68926244 -48936383 - MER69 DNA AcHobo -1029 197 62 * 352 252 38 46 chr9 68926688 68926819 -48935808 - L2 LINE L2 -2 3270 3141 245 274 38 47 chr9 68926912 68927018 -48935609 + L2 LINE L2 3159 3263 -50 4643 30 0 0 chr9 68927265 68927798 -48934829 + L1PA3 LINE L1 5620 6152 -3 202 300 0 14 chr9 68928819 68928889 -48933738 + C-rich Low_complexity Low_complexity 2 70 0 363 44 0 0 chr9 68928911 68928956 -48933671 + (CA)n Simple_repeat Simple_repeat 1 45 0 255 31 0 0 chr9 68929583 68929615 -48933012 + (TG)n Simple_repeat Simple_repeat 1 32 0 225 108 0 0 chr9 68929615 68929652 -48932975 + (GA)n Simple_repeat Simple_repeat 2 38 0 668 243 7 0 chr9 68929653 68929793 -48932834 - MER5A DNA MER1_type -28 161 21 471 261 58 0 chr9 68930030 68930168 -48932459 + MIR SINE MIR 63 208 -54 614 285 90 60 chr9 68930191 68930508 -48932119 - L1MEd LINE L1 -4881 1238 932 225 0 0 0 chr9 68930508 68930533 -48932094 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 614 285 90 60 chr9 68930533 68930815 -48931812 - L1MEd LINE L1 -5187 932 621 225 277 113 35 chr9 68932976 68933117 -48929510 - L1ME3A LINE L1 0 6170 6019 1060 281 89 29 chr9 68933325 68933829 -48928798 - L1ME3A LINE L1 -301 5869 5339 813 230 0 19 chr9 68933909 68934070 -48928557 - AluSg/x SINE Alu -19 291 134 195 42 0 0 chr9 68934355 68934379 -48928248 + (TTGTG)n Simple_repeat Simple_repeat 4 27 0 255 277 48 12 chr9 68934837 68934920 -48927707 + MIR SINE MIR 64 149 -59 730 206 91 15 chr9 68938112 68938311 -48924316 + MER58C DNA MER1_type 1 214 -1 1923 140 0 9 chr9 68939210 68939525 -48923102 - AluSx SINE Alu 0 312 1 2534 42 0 3 chr9 68939808 68940115 -48922512 - AluY SINE Alu -5 306 1 345 217 29 51 chr9 68940574 68940712 -48921915 - L1ME3A LINE L1 -4 6166 6032 527 276 180 23 chr9 68942395 68942833 -48919794 + L1MC/D LINE L1 5255 5761 -2047 1955 125 25 0 chr9 68943743 68944049 -48918578 + AluSx SINE Alu 2 314 0 189 299 175 10 chr9 68944881 68944978 -48917649 + L2 LINE L2 3197 3309 -4 26 0 0 0 chr9 68945325 68945351 -48917276 + AT_rich Low_complexity Low_complexity 1 26 0 198 103 0 0 chr9 68946671 68946700 -48915927 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 238 263 232 0 chr9 68946703 68946798 -48915829 - L2 LINE L2 -5 3308 3192 194 200 53 27 chr9 68947978 68948053 -48914574 + MER5C DNA MER1_type 206 282 -42 382 42 0 0 chr9 68948918 68948966 -48913661 + MADE1 DNA Mariner 33 80 0 1343 186 93 0 chr9 68949038 68949153 -48913474 + AluJo SINE Alu 6 109 -203 246 32 0 0 chr9 68949153 68949184 -48913443 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1343 186 93 0 chr9 68949184 68949347 -48913280 + AluJo SINE Alu 109 310 -2 332 324 125 48 chr9 68949423 68949906 -48912721 - L1MC4 LINE L1 -1243 6565 6100 2134 127 0 3 chr9 68949920 68950234 -48912393 + AluSq SINE Alu 1 313 0 207 289 0 0 chr9 68950307 68950390 -48912237 + (CATA)n Simple_repeat Simple_repeat 4 86 0 441 296 6 6 chr9 68950599 68950758 -48911869 - L1M4 LINE L1 -1565 4581 4423 1445 202 40 3 chr9 68950962 68951259 -48911368 - AluJo SINE Alu -4 308 1 21 0 0 0 chr9 68953028 68953049 -48909578 + AT_rich Low_complexity Low_complexity 1 21 0 530 255 103 85 chr9 68954562 68955068 -48907559 - MLT1G1 LTR MaLR -8 587 73 360 269 115 43 chr9 68955072 68955312 -48907315 + L1M4c LINE L1 956 1217 -5063 2415 78 0 0 chr9 68955314 68955620 -48907007 + AluSx SINE Alu 1 306 -6 312 355 48 48 chr9 68955777 68956067 -48906560 + L1MC4 LINE L1 5679 5968 -1840 4154 245 89 48 chr9 68956584 68958064 -48904563 + L1M2 LINE L1 11 1551 -5298 276 281 0 0 chr9 68958064 68958153 -48904474 + (TA)n Simple_repeat Simple_repeat 2 90 0 331 241 8 26 chr9 68958156 68958271 -48904356 - L1MC4 LINE L1 -1339 6983 1996 311 315 0 22 chr9 68958262 68958354 -48904273 - L1MC4 LINE L1 -1339 6703 6614 * 444 192 15 31 chr9 68958356 68958486 -48904141 + (CATATA)n Simple_repeat Simple_repeat 6 133 0 307 271 0 62 chr9 68958486 68958582 -48904045 - L1MC4 LINE L1 -1339 6703 6614 * 318 356 0 0 chr9 68958518 68958608 -48904019 + L1MC4 LINE L1 6614 6703 -1339 * 339 242 0 63 chr9 68958586 68958681 -48903946 - L1MC4 LINE L1 -1339 6703 6615 335 244 22 44 chr9 68958713 68958803 -48903824 - L1MC4 LINE L1 -1340 6702 6615 265 244 47 0 chr9 68958806 68958892 -48903735 + L1MC4 LINE L1 6614 6703 -1339 6219 165 7 1 chr9 68958925 68960056 -48902571 + L1M1 LINE L1 1556 2693 -4156 2775 139 18 39 chr9 68960041 68960352 -48902275 + L1M1 LINE L1 5997 6294 -711 * 2124 114 0 10 chr9 68960352 68960660 -48901967 + AluY SINE Alu 1 305 -6 2775 139 18 39 chr9 68960660 68960858 -48901769 + L1M1 LINE L1 6294 6495 -510 1053 113 0 75 chr9 68960858 68961122 -48901505 - MER51B LTR ERV1 -189 188 1 1113 178 38 0 chr9 68961122 68961322 -48901305 - L1MB3 LINE L1 -301 5882 5671 2007 132 10 7 chr9 68961322 68961632 -48900995 - AluSx SINE Alu -1 311 1 1113 178 38 0 chr9 68961632 68961647 -48900980 - L1MB3 LINE L1 -512 5671 5658 732 239 122 12 chr9 68962114 68962369 -48900258 - L1ME3A LINE L1 0 6170 5888 2157 196 47 81 chr9 68964726 68965072 -48897555 - LTR9 LTR ERV1 0 612 295 2104 42 0 8 chr9 68965072 68965333 -48897294 - AluY SINE Alu -9 302 44 2157 196 47 81 chr9 68965333 68965619 -48897008 - LTR9 LTR ERV1 -317 295 1 846 275 49 93 chr9 68965926 68966461 -48896166 - MER34 LTR ERV1 -30 512 2 183 302 23 35 chr9 68967019 68967105 -48895522 - L2 LINE L2 -92 3221 3137 213 39 0 0 chr9 68967311 68967337 -48895290 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 230 146 0 36 chr9 68967396 68967451 -48895176 + (GGGA)n Simple_repeat Simple_repeat 4 56 0 448 204 0 11 chr9 68967525 68967613 -48895014 - MER21B LTR ERV1 -776 87 1 332 236 14 0 chr9 68968497 68968569 -48894058 - MER116 DNA Mariner -5 75 3 220 264 222 14 chr9 68969187 68969331 -48893296 - MER5A DNA MER1_type -7 182 9 180 111 0 0 chr9 68970117 68970144 -48892483 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 1934 116 7 0 chr9 68970701 68970977 -48891650 + AluSx SINE Alu 28 305 -7 24 0 0 0 chr9 68972454 68972478 -48890149 + AT_rich Low_complexity Low_complexity 1 24 0 1785 155 7 0 chr9 68972618 68972908 -48889719 + AluJb SINE Alu 1 292 -20 428 280 36 30 chr9 68973220 68973388 -48889239 + (CATG)n Simple_repeat Simple_repeat 3 171 0 338 263 21 9 chr9 68973396 68973697 -48888930 + (CA)n Simple_repeat Simple_repeat 1 304 0 480 18 0 0 chr9 68975245 68975302 -48887325 + (TC)n Simple_repeat Simple_repeat 1 57 0 5691 151 16 24 chr9 68975373 68976335 -48886292 + LTR13 LTR ERVK 1 954 0 16300 211 23 34 chr9 68976335 68980150 -48882477 + HERVK13 LTR ERVK 1 3773 -4343 248 114 0 0 chr9 68980151 68980186 -48882441 + LTR13 LTR ERVK 973 1007 0 272 250 10 20 chr9 68981757 68981857 -48880770 + (TG)n Simple_repeat Simple_repeat 2 100 0 348 213 11 38 chr9 68981859 68982042 -48880585 + (TATG)n Simple_repeat Simple_repeat 2 179 0 * 454 204 17 22 chr9 68982027 68982208 -48880419 + (TG)n Simple_repeat Simple_repeat 1 180 0 225 183 0 70 chr9 68983413 68983484 -48879143 - MIR SINE MIR -74 188 123 210 341 22 52 chr9 68983562 68983697 -48878930 - MER5B DNA MER1_type -3 175 45 342 118 0 0 chr9 68983706 68983757 -48878870 + Alu SINE Alu 1 51 -252 801 172 123 41 chr9 68983926 68984221 -48878406 - MLT1B LTR MaLR -1 389 1 987 189 182 46 chr9 68984547 68984849 -48877778 + MLT1B LTR MaLR 9 351 -39 1714 155 64 21 chr9 68985068 68985397 -48877230 + MER61A LTR ERV1 1 343 0 405 39 0 0 chr9 68987033 68987084 -48875543 + (TATG)n Simple_repeat Simple_repeat 2 52 0 1874 124 4 4 chr9 68987084 68987358 -48875269 - AluSx SINE Alu -29 283 10 427 288 78 0 chr9 68988039 68988244 -48874383 + LTR16A LTR ERVL 119 339 -111 403 281 58 35 chr9 68989519 68989690 -48872937 + HAL1b LINE L1 413 587 -761 270 241 106 0 chr9 68989728 68989869 -48872758 + HAL1b LINE L1 651 806 -542 1239 200 98 69 chr9 68989935 68989975 -48872652 + MLT1D LTR MaLR 1 38 -467 2638 158 7 0 chr9 68989975 68990398 -48872229 - MSTB LTR MaLR 0 426 1 1239 200 98 69 chr9 68990398 68990848 -48871779 + MLT1D LTR MaLR 38 505 0 241 296 0 37 chr9 68990883 68991018 -48871609 - L1ME4a LINE L1 -189 5932 5803 1005 177 0 0 chr9 68991562 68991720 -48870907 - FRAM SINE Alu -17 159 2 387 0 0 0 chr9 68992476 68992519 -48870108 + (TG)n Simple_repeat Simple_repeat 2 44 0 22 0 0 0 chr9 68994020 68994042 -48868585 + AT_rich Low_complexity Low_complexity 1 22 0 241 197 30 0 chr9 68995740 68995806 -48866821 + CT-rich Low_complexity Low_complexity 1 68 0 2146 103 3 3 chr9 68995806 68996096 -48866531 - AluSc SINE Alu -19 290 1 250 246 115 62 chr9 68997651 68997781 -48864846 + MLT1K LTR MaLR 169 305 -283 6614 211 61 44 chr9 69000095 69000301 -48862326 + L1MB7 LINE L1 5 206 -6438 2273 119 0 3 chr9 69000301 69000612 -48862015 - AluSq SINE Alu -3 310 1 6614 211 61 44 chr9 69000612 69003755 -48858872 + L1MB7 LINE L1 206 3443 -3201 2164 197 89 35 chr9 69003755 69004272 -48858355 - MER68 LTR ERV1 -15 547 3 7869 196 59 43 chr9 69004273 69004889 -48857738 + L1MB7 LINE L1 3451 4055 -2627 2316 102 0 0 chr9 69004889 69005183 -48857444 - AluSc SINE Alu -15 294 1 7869 196 59 43 chr9 69005183 69006015 -48856612 + L1MB7 LINE L1 4055 4872 -1810 2600 34 0 12 chr9 69006015 69006335 -48856292 + L1PA4 LINE L1 5840 6155 0 7869 196 59 43 chr9 69006335 69006378 -48856249 + L1MB7 LINE L1 4872 4913 -1769 2372 115 0 0 chr9 69006378 69006690 -48855937 + AluSx SINE Alu 1 312 0 7869 196 59 43 chr9 69006690 69008366 -48854261 + L1MB7 LINE L1 4913 6659 -23 220 252 141 22 chr9 69010450 69010585 -48852042 - L3 LINE CR1 -293 1284 1134 226 347 31 0 chr9 69010687 69010785 -48851842 - MIR SINE MIR -67 141 41 239 326 11 0 chr9 69010813 69010908 -48851719 - L3 LINE CR1 -463 1114 1019 2378 57 3 0 chr9 69010960 69011243 -48851384 - AluY SINE Alu -7 304 21 259 212 71 35 chr9 69011603 69011688 -48850939 - L3 LINE CR1 -870 707 620 183 357 63 8 chr9 69011785 69011911 -48850716 + MIR SINE MIR 47 179 -83 194 337 22 11 chr9 69011960 69012049 -48850578 - L3 LINE CR1 -1060 517 428 1159 199 63 20 chr9 69015814 69016165 -48846462 - L1M4 LINE L1 -3047 3099 2734 2035 146 26 20 chr9 69016472 69016814 -48845813 + MER2 DNA MER2_type 1 344 0 678 256 18 31 chr9 69017465 69017648 -48844979 + MIR SINE MIR 36 217 -45 216 0 0 0 chr9 69017648 69017672 -48844955 + (CA)n Simple_repeat Simple_repeat 2 25 0 678 256 18 31 chr9 69017672 69017715 -48844912 + MIR SINE MIR 217 259 -3 462 189 11 0 chr9 69019713 69019808 -48842819 - MER5A DNA MER1_type -87 102 7 206 280 103 19 chr9 69020764 69020871 -48841756 - L2 LINE L2 -1 3312 3197 2165 276 92 48 chr9 69023481 69024497 -48838130 + Charlie8 DNA MER1_type 488 1548 -869 3532 171 40 15 chr9 69024503 69024987 -48837640 - L1MB2 LINE L1 -239 5932 5462 1874 179 134 7 chr9 69024987 69025396 -48837231 + LOR1b LTR ERV1 1 461 0 3532 171 40 15 chr9 69025396 69025850 -48836777 - L1MB2 LINE L1 -709 5462 4963 1115 270 75 55 chr9 69025860 69026368 -48836259 + Charlie8 DNA MER1_type 1560 2077 -340 460 153 0 0 chr9 69026417 69026489 -48836138 - FRAM SINE Alu -69 107 36 249 305 25 42 chr9 69026616 69026734 -48835893 + Charlie8 DNA MER1_type 2301 2416 -1 43580 32 22 3 chr9 69026757 69032777 -48829850 - L1PA3 LINE L1 -2 6153 14 810 117 175 53 chr9 69033154 69033308 -48829319 + L1MA7 LINE L1 6060 6247 -44 1410 158 61 27 chr9 69033308 69033605 -48829022 + AluJo SINE Alu 1 307 -5 810 117 175 53 chr9 69033605 69033656 -48828971 + L1MA7 LINE L1 6247 6290 -1 291 237 17 0 chr9 69033963 69034022 -48828605 - MER5A DNA MER1_type -79 110 51 481 256 227 27 chr9 69034231 69034671 -48827956 - L2 LINE L2 -19 3294 2743 2376 149 53 17 chr9 69034736 69035152 -48827475 - MER65A LTR ERV1 0 445 15 708 320 147 28 chr9 69035839 69036832 -48825795 - L2 LINE L2 -2 3311 2160 730 288 149 6 chr9 69036959 69037275 -48825352 + MLT1L LTR MaLR 243 603 -12 442 304 113 29 chr9 69037288 69037528 -48825099 - L2 LINE L2 -1976 1338 1079 252 283 9 71 chr9 69037534 69037647 -48824980 - MIR SINE MIR 0 262 157 * 349 291 87 37 chr9 69037644 69037885 -48824742 - L2 LINE L2 -2232 1082 830 1135 166 9 113 chr9 69038699 69039025 -48823602 - L1MC5 LINE L1 -908 7053 6762 1963 114 3 7 chr9 69043296 69043585 -48819042 - AluSg SINE Alu 0 310 23 5653 154 65 24 chr9 69043796 69044793 -48817834 + ERVL-B1 LTR ERVL 4720 5757 -7 3041 149 35 2 chr9 69044793 69045275 -48817352 + MLT2B1 LTR ERVL 1 498 -22 404 214 0 78 chr9 69045631 69045734 -48816893 + MIR SINE MIR 74 168 -94 1032 114 0 48 chr9 69046022 69046189 -48816438 + AluSg/x SINE Alu 147 305 -7 372 261 5 5 chr9 69047656 69048092 -48814535 + (TG)n Simple_repeat Simple_repeat 1 436 0 346 243 11 0 chr9 69048145 69048322 -48814305 + (TG)n Simple_repeat Simple_repeat 2 180 0 329 263 145 70 chr9 69048869 69048991 -48813636 - HAL1 LINE L1 -1026 1481 1370 4115 220 68 6 chr9 69048991 69049969 -48812658 - MER45B DNA AcHobo -1 1039 1 329 263 145 70 chr9 69049969 69050321 -48812306 - HAL1 LINE L1 -1137 1370 971 450 0 0 0 chr9 69051360 69051410 -48811217 + (TG)n Simple_repeat Simple_repeat 2 51 0 698 167 0 0 chr9 69052190 69052298 -48810329 + FRAM SINE Alu 47 154 -22 1888 97 41 28 chr9 69052304 69052594 -48810033 + AluSx SINE Alu 1 294 -18 994 293 34 31 chr9 69052632 69053049 -48809578 - L1ME3A LINE L1 -24 6146 5729 1573 145 30 33 chr9 69053151 69053404 -48809223 + L1MA7 LINE L1 5989 6242 -49 1839 163 0 0 chr9 69053404 69053698 -48808929 + AluJb SINE Alu 5 298 -14 1573 145 30 33 chr9 69053698 69053748 -48808879 + L1MA7 LINE L1 6242 6291 0 378 277 104 30 chr9 69054999 69055335 -48807292 + L1ME LINE L1 4073 4433 -1713 288 254 15 0 chr9 69055597 69055664 -48806963 + MER58 DNA MER1_type 27 94 -2326 2375 61 0 0 chr9 69055666 69055961 -48806666 - AluY SINE Alu -16 295 1 302 292 0 0 chr9 69055992 69056064 -48806563 + MER58 DNA MER1_type 2349 2420 0 319 318 41 41 chr9 69056065 69056201 -48806426 + L1ME LINE L1 4744 4882 -1264 1578 109 0 0 chr9 69056201 69056422 -48806205 + AluSg/x SINE Alu 82 302 -8 319 318 41 41 chr9 69056422 69056505 -48806122 + L1ME LINE L1 4881 4963 -1183 382 291 142 39 chr9 69056537 69056886 -48805741 + L1ME LINE L1 5088 5474 -647 349 278 83 35 chr9 69056905 69057074 -48805553 - L2 LINE L2 -218 3054 2878 258 356 19 0 chr9 69057509 69057613 -48805014 + MIR SINE MIR 154 259 -3 238 254 127 24 chr9 69060722 69060848 -48801779 - LTR16A LTR ERVL -173 277 139 295 211 118 0 chr9 69061363 69061439 -48801188 - MER97a DNA MER1_type? -9 885 801 2012 288 57 12 chr9 69061452 69062102 -48800525 - MER97b DNA MER1_type? -374 679 1 248 292 188 42 chr9 69062391 69062535 -48800092 + MIR SINE MIR 92 256 -6 507 268 80 77 chr9 69063022 69063081 -48799546 - LTR16C LTR ERVL -2 489 432 2790 10 0 0 chr9 69063081 69063392 -48799235 + AluYa5 SINE Alu 1 311 0 507 268 80 77 chr9 69063392 69063720 -48798907 - LTR16C LTR ERVL -59 432 101 214 216 0 20 chr9 69063928 69063979 -48798648 + (CGGG)n Simple_repeat Simple_repeat 3 52 0 428 179 0 13 chr9 69065265 69065343 -48797284 + MER8 DNA MER2_type 163 239 0 539 275 84 6 chr9 69065853 69066020 -48796607 + MER5A DNA MER1_type 1 180 -9 1974 150 72 8 chr9 69066241 69066608 -48796019 + MLT1B LTR MaLR 1 396 0 193 294 87 33 chr9 69067846 69067938 -48794689 - MIR SINE MIR -118 144 48 1866 216 15 13 chr9 69068071 69068465 -48794162 + MLT1F LTR MaLR 72 466 -76 527 297 109 10 chr9 69068765 69069078 -48793549 + L2 LINE L2 2459 2802 -512 182 312 43 36 chr9 69069093 69069231 -48793396 + L2 LINE L2 2922 3060 -253 1077 216 23 59 chr9 69069287 69069592 -48793035 - MLT1A2 LTR MaLR -80 294 1 180 377 0 0 chr9 69069678 69069747 -48792880 + L2 LINE L2 3245 3313 0 1388 240 121 20 chr9 69070016 69070504 -48792123 - MLT1H LTR MaLR -10 539 3 244 159 133 0 chr9 69070504 69070562 -48792065 - MIR SINE MIR -65 143 84 781 166 6 46 chr9 69071169 69071344 -48791283 + L1MA7 LINE L1 6121 6288 -3 1064 236 5 0 chr9 69071591 69071807 -48790820 + MER58A DNA MER1_type 1 217 -7 840 176 30 149 chr9 69072637 69072972 -48789655 + MER51C LTR ERV1 346 640 0 781 313 108 25 chr9 69073485 69073920 -48788707 + MLT1L LTR MaLR 120 590 -25 1279 145 54 21 chr9 69074167 69074409 -48788218 + AluJo SINE Alu 61 310 -2 507 319 71 6 chr9 69074771 69075107 -48787520 + L1ME3A LINE L1 4875 5232 -914 662 293 165 43 chr9 69075209 69075889 -48786738 + L1ME3A LINE L1 5407 6169 -1 311 316 79 26 chr9 69076266 69076418 -48786209 - MLT1G1 LTR MaLR 0 588 383 376 264 110 31 chr9 69077738 69077901 -48784726 - MIR SINE MIR -6 256 81 313 260 68 0 chr9 69078564 69078637 -48783990 - L2 LINE L2 0 3272 3195 2380 71 0 3 chr9 69078749 69079057 -48783570 - AluY SINE Alu -4 307 1 2382 69 0 7 chr9 69079931 69080237 -48782390 - AluY SINE Alu -7 304 1 305 315 56 43 chr9 69080250 69080412 -48782215 + L1 LINE L1 2863 3026 -3120 690 300 152 18 chr9 69080418 69080761 -48781866 - L2 LINE L2 0 3313 2925 1371 275 86 98 chr9 69080959 69082201 -48780426 - L2 LINE L2 -1567 1747 521 321 89 0 0 chr9 69082568 69082613 -48780014 + (T)n Simple_repeat Simple_repeat 1 45 0 512 325 95 4 chr9 69082773 69083025 -48779602 - L2 LINE L2 0 3313 3039 355 284 276 35 chr9 69083091 69083715 -48778912 - L2 LINE L2 -425 2889 2116 8997 108 26 2 chr9 69083803 69085057 -48777570 - HSMAR1 DNA Mariner -2 1285 1 302 253 140 53 chr9 69085387 69085537 -48777090 - MIR SINE MIR -7 255 93 2013 117 10 3 chr9 69086930 69087220 -48775407 + AluSg SINE Alu 1 292 -18 303 28 0 0 chr9 69087362 69087398 -48775229 + (TTTC)n Simple_repeat Simple_repeat 2 37 0 1737 169 7 7 chr9 69087400 69087708 -48774919 - AluJb SINE Alu -2 310 3 427 310 70 15 chr9 69088189 69088666 -48773961 + MLT1E2 LTR MaLR 1 611 -15 1992 191 3 19 chr9 69089866 69090237 -48772390 - MLT1A1 LTR MaLR 0 365 1 2608 108 8 3 chr9 69090492 69090854 -48771773 + THE1B LTR MaLR 1 364 0 198 0 0 0 chr9 69091192 69091214 -48771413 + (A)n Simple_repeat Simple_repeat 1 22 0 349 304 87 12 chr9 69091615 69091776 -48770851 - MIR SINE MIR -10 252 80 2113 154 27 70 chr9 69092876 69093350 -48769277 - MLT2C2 LTR ERVL -10 454 1 655 214 254 18 chr9 69094321 69094596 -48768031 - MLT1G LTR MaLR 0 590 251 334 270 40 24 chr9 69094694 69094820 -48767807 - MLT1G LTR MaLR -467 128 1 707 210 98 54 chr9 69095645 69095850 -48766777 - MLT1J LTR MaLR -294 217 4 499 235 229 11 chr9 69096115 69096294 -48766333 + MIR SINE MIR 31 248 -14 188 299 149 0 chr9 69097107 69097174 -48765453 - MIR SINE MIR -74 188 112 185 250 17 0 chr9 69097286 69097346 -48765281 + GA-rich Low_complexity Low_complexity 3 63 0 669 164 0 0 chr9 69098699 69098803 -48763824 + AluSp SINE Alu 2 105 -208 841 122 0 0 chr9 69100184 69100315 -48762312 + AluY SINE Alu 180 310 -1 1847 137 9 37 chr9 69100525 69100710 -48761917 - AluSx SINE Alu 0 312 138 2066 115 3 3 chr9 69100710 69101022 -48761605 - AluSx SINE Alu 0 312 1 1847 137 9 37 chr9 69101022 69101157 -48761470 - AluSx SINE Alu -174 138 1 774 240 29 20 chr9 69101411 69101615 -48761012 + Charlie4 DNA MER1_type 19 224 -1737 259 178 0 0 chr9 69101928 69101973 -48760654 - MIR SINE MIR -139 123 79 359 325 93 40 chr9 69102811 69103113 -48759514 + L2 LINE L2 2991 3308 -5 2303 190 36 57 chr9 69104732 69105263 -48757364 - MLT2B1 LTR ERVL 0 520 1 1257 213 80 25 chr9 69105703 69106027 -48756600 + MER2 DNA MER2_type 3 344 0 283 329 105 54 chr9 69106441 69106754 -48755873 + L2 LINE L2 1598 1926 -1388 342 286 38 0 chr9 69107111 69107216 -48755411 - L1MD3 LINE L1 -8 7987 7879 356 381 11 5 chr9 69107224 69107413 -48755214 - MIR SINE MIR -70 192 3 299 294 119 23 chr9 69107419 69107854 -48754773 + L1MC4a LINE L1 4142 4618 -1528 229 196 103 113 chr9 69107858 69108062 -48754565 - L1MC4 LINE L1 -4 8038 7837 1247 255 25 28 chr9 69108103 69108534 -48754093 - L1ME2 LINE L1 -10 6154 5725 1847 79 115 11 chr9 69108711 69108990 -48753637 + AluSc SINE Alu 1 308 -1 234 324 19 9 chr9 69109370 69109478 -48753149 + L1M1 LINE L1 5326 5434 -869 2077 121 0 3 chr9 69109500 69109797 -48752830 - AluSx SINE Alu -16 296 1 437 266 113 40 chr9 69109942 69110243 -48752384 + L1MC4a LINE L1 5668 5851 -333 25 0 0 0 chr9 69110413 69110438 -48752189 + AT_rich Low_complexity Low_complexity 1 25 0 2080 113 0 0 chr9 69110592 69110874 -48751753 - AluSx SINE Alu -20 292 11 207 242 0 0 chr9 69111200 69111262 -48751365 + (CATATA)n Simple_repeat Simple_repeat 1 62 0 2114 107 0 0 chr9 69112414 69112712 -48749915 + AluSx SINE Alu 1 298 -14 276 102 0 0 chr9 69113840 69113889 -48748738 + (CA)n Simple_repeat Simple_repeat 1 49 0 354 191 34 22 chr9 69114295 69114384 -48748243 + MLT1G1 LTR MaLR 506 595 0 27 92 0 0 chr9 69114632 69114708 -48747919 + AT_rich Low_complexity Low_complexity 1 76 0 311 277 108 13 chr9 69115486 69115725 -48746902 + MLT1G1 LTR MaLR 2 270 -285 271 219 185 68 chr9 69115783 69115929 -48746698 + MLT1G1 LTR MaLR 393 595 0 327 273 130 26 chr9 69116306 69116460 -48746167 + MIR SINE MIR 88 257 -5 2405 225 47 40 chr9 69116576 69117006 -48745621 - MLT1E2 LTR MaLR -2 624 187 1684 178 7 20 chr9 69117006 69117309 -48745318 - L1PB4 LINE L1 -13 6143 5845 2405 225 47 40 chr9 69117309 69117496 -48745131 - MLT1E2 LTR MaLR -439 187 3 692 219 57 132 chr9 69117505 69117929 -48744698 - MLT1E2-int LTR MaLR -7 1364 973 240 256 39 26 chr9 69118171 69118249 -48744378 - MLT1E2-int LTR MaLR -590 781 703 1518 264 76 7 chr9 69118467 69118902 -48743725 - MLT1E2-int LTR MaLR -766 605 141 1231 255 24 0 chr9 69118902 69119196 -48743431 - ERVL LTR ERVL -4582 1182 882 660 281 31 45 chr9 69119274 69119298 -48743329 - ERVL LTR ERVL -5062 702 679 2576 199 52 7 chr9 69119298 69119836 -48742791 - MER68 LTR ERV1 0 562 1 660 281 31 45 chr9 69119836 69120035 -48742592 - ERVL LTR ERVL -5085 679 482 1520 258 65 10 chr9 69120039 69120454 -48742173 + MER20B DNA MER1_type 70 507 -276 441 0 0 0 chr9 69120459 69120508 -48742119 + (TG)n Simple_repeat Simple_repeat 2 50 0 12863 74 4 0 chr9 69120647 69123120 -48739507 - L1PA7 LINE L1 0 6154 3684 847 245 200 56 chr9 69123153 69123638 -48738989 - MLT1H1 LTR MaLR 0 555 1 2339 120 34 22 chr9 69124303 69124661 -48737966 + THE1B LTR MaLR 3 364 0 597 110 0 0 chr9 69124731 69124822 -48737805 + (TA)n Simple_repeat Simple_repeat 1 91 0 26 74 0 0 chr9 69124857 69124911 -48737716 + AT_rich Low_complexity Low_complexity 1 54 0 3192 158 16 53 chr9 69124911 69125538 -48737089 + MER6A DNA MER2_type 2 605 0 266 164 45 0 chr9 69125651 69125718 -48736909 + MER20B DNA MER1_type 574 643 -140 947 239 88 38 chr9 69125948 69126523 -48736104 - MLT1G3 LTR MaLR 0 593 5 300 175 0 0 chr9 69126944 69127007 -48735620 + (TG)n Simple_repeat Simple_repeat 1 63 0 27 29 0 0 chr9 69129300 69129334 -48733293 + AT_rich Low_complexity Low_complexity 1 34 0 2039 117 0 7 chr9 69129564 69129862 -48732765 + AluSc SINE Alu 1 296 -13 705 255 122 0 chr9 69130158 69130354 -48732273 - MER58A DNA MER1_type 0 224 5 1520 294 75 16 chr9 69130446 69131021 -48731606 - ERVL LTR ERVL -3086 2678 2070 378 270 49 32 chr9 69131064 69131249 -48731378 - ERVL LTR ERVL -3686 1968 1781 663 278 127 5 chr9 69132173 69132378 -48730249 + MIR SINE MIR 20 249 -13 239 246 0 18 chr9 69132695 69132752 -48729875 + CT-rich Low_complexity Low_complexity 2 57 0 226 119 0 0 chr9 69133931 69133973 -48728654 + L1MA9 LINE L1 6236 6277 -35 307 235 128 27 chr9 69134139 69134288 -48728339 - L1MC5 LINE L1 -173 7788 7625 503 315 131 22 chr9 69134308 69134667 -48727960 + L1MEc LINE L1 941 1338 -5058 1558 273 66 38 chr9 69134871 69135778 -48726849 + L1MEc LINE L1 2874 3806 -2409 1489 169 40 0 chr9 69135785 69136086 -48726541 + L1MA4 LINE L1 5988 6300 0 304 314 81 14 chr9 69136505 69136924 -48725703 - L1MC/D LINE L1 -528 5593 5327 582 325 95 29 chr9 69136926 69137224 -48725403 - L1MC/D LINE L1 -823 5323 4993 2599 96 85 10 chr9 69137224 69137622 -48725005 + MSTA LTR MaLR 1 428 0 582 325 95 29 chr9 69137622 69137701 -48724926 - L1MC/D LINE L1 -1153 4993 4921 427 307 119 18 chr9 69137716 69137934 -48724693 + MLT1L LTR MaLR 35 274 -341 226 316 93 45 chr9 69138525 69138901 -48723726 - L1MC/D LINE L1 -2090 4056 3663 27 0 0 0 chr9 69138925 69138952 -48723675 + AT_rich Low_complexity Low_complexity 1 27 0 193 302 95 35 chr9 69139914 69140030 -48722597 - MIR3 SINE MIR -1 207 85 194 393 62 9 chr9 69140044 69140156 -48722471 - L2 LINE L2 -18 3254 3137 716 274 103 45 chr9 69140204 69140688 -48721939 + MLT1G1 LTR MaLR 14 549 0 194 269 45 75 chr9 69141975 69142042 -48720585 + MIR SINE MIR 124 188 -74 827 278 13 9 chr9 69142390 69142620 -48720007 + MIR SINE MIR 1 231 -31 22 56 0 0 chr9 69143098 69143134 -48719493 + AT_rich Low_complexity Low_complexity 1 36 0 194 349 12 12 chr9 69143200 69143283 -48719344 + MER5A DNA MER1_type 3 85 -104 4189 139 12 10 chr9 69143312 69144004 -48718623 - L1MA8 LINE L1 -4 6287 5595 450 272 104 35 chr9 69144031 69144204 -48718423 - MIR SINE MIR -13 249 65 439 164 43 17 chr9 69144204 69144320 -48718307 + L1MA10 LINE L1 6215 6333 -1 1339 167 27 11 chr9 69144378 69144642 -48717985 + L1MA5 LINE L1 5980 6254 -46 1237 165 0 0 chr9 69144650 69144850 -48717777 + L1PB1 LINE L1 1 200 -6663 * 15836 180 27 16 chr9 69144828 69145072 -48717555 + L1PB1 LINE L1 602 842 -6025 671 141 23 16 chr9 69145072 69145200 -48717427 - L1MA8 LINE L1 -4 6287 6159 15836 180 27 16 chr9 69145200 69147809 -48714818 + L1PB1 LINE L1 842 3420 -3447 2136 98 10 14 chr9 69147809 69148104 -48714523 + AluSp SINE Alu 1 294 -19 15836 180 27 16 chr9 69148104 69151100 -48711527 + L1PB1 LINE L1 3420 6742 -125 358 70 0 0 chr9 69151130 69151187 -48711440 + L1MA6 LINE L1 6242 6298 -2 869 252 26 98 chr9 69151582 69152082 -48710545 + HAL1 LINE L1 800 1263 -1244 559 179 80 9 chr9 69152084 69152196 -48710431 + MER21B LTR ERV1 326 445 -418 425 299 55 18 chr9 69152740 69152904 -48709723 + MIR SINE MIR 81 250 -12 368 230 35 75 chr9 69152976 69153019 -48709608 + MLT1J LTR MaLR 1 44 -467 2134 115 0 0 chr9 69153019 69153324 -48709303 - AluSg1 SINE Alu -4 305 1 368 230 35 75 chr9 69153324 69153454 -48709173 + MLT1J LTR MaLR 44 167 -344 377 273 107 0 chr9 69153699 69153849 -48708778 + HAL1 LINE L1 1260 1425 -1082 1690 97 35 12 chr9 69155152 69155409 -48707218 + AluSx SINE Alu 35 297 -15 350 203 258 39 chr9 69155773 69156027 -48706600 + MLT1G LTR MaLR 4 322 -273 332 228 13 0 chr9 69156086 69156165 -48706462 + MLT1G LTR MaLR 391 470 -72 2242 171 20 39 chr9 69157913 69157954 -48704673 + MSTB1 LTR MaLR 1 41 -391 1871 131 3 11 chr9 69157954 69158270 -48704357 + AluSx SINE Alu 1 314 0 2242 171 20 39 chr9 69158270 69158666 -48703961 + MSTB1 LTR MaLR 41 431 -1 425 108 15 0 chr9 69158681 69158746 -48703881 + MSTB1 LTR MaLR 366 431 -1 494 60 36 72 chr9 69158990 69159073 -48703554 - MADE1 DNA Mariner 0 80 1 268 227 235 17 chr9 69159331 69159450 -48703177 - MIR SINE MIR -36 226 82 1988 145 0 0 chr9 69160133 69160430 -48702197 - AluSx SINE Alu -15 297 1 447 226 166 85 chr9 69160988 69161187 -48701440 + MER58C DNA MER1_type 1 215 0 2090 129 0 0 chr9 69161588 69161891 -48700736 + AluSx SINE Alu 1 303 -9 1961 144 0 10 chr9 69162360 69162672 -48699955 - AluSx SINE Alu -3 309 1 297 262 29 4 chr9 69165926 69166204 -48696423 + (TG)n Simple_repeat Simple_repeat 1 285 0 195 195 0 39 chr9 69166884 69166961 -48695666 + (CA)n Simple_repeat Simple_repeat 1 74 0 268 398 74 0 chr9 69167886 69168130 -48694497 + L2 LINE L2 2104 2365 -949 1658 149 0 41 chr9 69168191 69168513 -48694114 - AluSx SINE Alu 0 310 1 2775 161 36 43 chr9 69168529 69168823 -48693804 + MER44D DNA MER2_type 2 297 -2190 2246 88 0 3 chr9 69168823 69169119 -48693508 - AluSq SINE Alu -18 295 1 2775 161 36 43 chr9 69169119 69169377 -48693250 + MER44D DNA MER2_type 297 605 0 1257 253 75 5 chr9 69169391 69169779 -48692848 - L1MD3 LINE L1 -13 7982 7568 747 208 70 62 chr9 69169782 69170023 -48692604 + MER96B DNA MER1_type? 168 410 -7 460 171 9 99 chr9 69170443 69170554 -48692073 - MER96B DNA MER1_type? -7 410 310 1053 208 76 61 chr9 69171282 69171598 -48691029 + LTR56 LTR ERV1 11 303 -134 258 32 0 0 chr9 69171598 69171629 -48690998 + (CA)n Simple_repeat Simple_repeat 2 32 0 1053 208 76 61 chr9 69171629 69171767 -48690860 + LTR56 LTR ERV1 303 437 0 187 158 26 0 chr9 69171839 69171877 -48690750 - MIR SINE MIR -215 47 9 407 230 20 0 chr9 69172323 69172423 -48690204 - MER53 DNA DNA -85 104 3 242 188 109 79 chr9 69172493 69172594 -48690033 - L1MC4 LINE L1 0 8042 7939 233 233 0 0 chr9 69172598 69172641 -48689986 + polypyrimidine Low_complexity Low_complexity 2 44 0 2380 92 0 3 chr9 69173822 69174128 -48688499 + AluSc SINE Alu 1 305 -4 192 222 48 95 chr9 69174207 69174270 -48688357 + L2 LINE L2 3246 3305 -8 2153 155 0 0 chr9 69174301 69174611 -48688016 + AluSx SINE Alu 1 310 -2 668 289 73 0 chr9 69174934 69175166 -48687461 - MIR SINE MIR -1 261 13 224 288 25 0 chr9 69175785 69175865 -48686762 + MIR SINE MIR 73 154 -108 548 176 0 0 chr9 69175869 69175954 -48686673 - Tigger7 DNA MER2_type 0 2491 2407 2118 179 38 0 chr9 69175954 69176345 -48686282 - Tigger7 DNA MER2_type -152 581 176 219 269 221 0 chr9 69176347 69176451 -48686176 + L2 LINE L2 3146 3272 0 188 250 0 0 chr9 69176455 69176491 -48686136 + L3 LINE CR1 1526 1561 -16 354 232 128 8 chr9 69176567 69176692 -48685935 + L1M4 LINE L1 4142 4281 -1865 * 13651 201 44 31 chr9 69176683 69176929 -48685698 + L1MB1 LINE L1 2932 3173 -4435 2525 76 3 0 chr9 69176929 69177233 -48685394 + AluSp SINE Alu 1 305 -8 13651 201 44 31 chr9 69177233 69179672 -48682955 + L1MB1 LINE L1 3173 5695 -1913 363 23 0 0 chr9 69179672 69179716 -48682911 + (CA)n Simple_repeat Simple_repeat 2 45 0 13651 201 44 31 chr9 69179716 69181564 -48681063 + L1MB1 LINE L1 5695 7516 -92 3402 97 4 12 chr9 69181961 69182454 -48680173 + L1PA13 LINE L1 5675 6163 0 794 270 93 14 chr9 69182484 69183026 -48679601 - L1ME LINE L1 -380 5782 5193 234 0 0 0 chr9 69183030 69183056 -48679571 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 759 240 0 0 chr9 69183059 69183205 -48679422 - FRAM SINE Alu -30 146 1 978 312 103 27 chr9 69183237 69185223 -48677404 - L1ME LINE L1 -983 5163 2965 2842 132 7 2 chr9 69185223 69185646 -48676981 + MSTA LTR MaLR 1 425 -3 978 312 103 27 chr9 69185646 69185691 -48676936 - L1ME LINE L1 -3181 2965 2925 2024 131 0 27 chr9 69186396 69186693 -48675934 - AluSx SINE Alu -18 294 6 253 301 48 0 chr9 69187146 69187249 -48675378 + MLT1J2 LTR MaLR 33 140 -310 399 119 0 0 chr9 69187388 69187447 -48675180 - MLT1I LTR MaLR -32 377 319 394 314 16 32 chr9 69187519 69187771 -48674856 + L1ME4a LINE L1 5672 5919 -202 229 224 86 0 chr9 69188973 69189031 -48673596 - L2 LINE L2 -2 3311 3249 981 312 38 26 chr9 69189422 69189845 -48672782 - LTR16B LTR ERVL 0 464 37 1023 64 14 7 chr9 69189990 69190130 -48672497 - MER4C LTR ERV1 -324 141 1 1021 201 86 26 chr9 69190135 69190404 -48672223 + LTR40b LTR ERVL 174 458 -4 1045 180 145 50 chr9 69191542 69191719 -48670908 - L1MD2 LINE L1 -8 6351 6192 297 89 0 0 chr9 69191719 69191764 -48670863 + (TG)n Simple_repeat Simple_repeat 2 46 0 1045 180 145 50 chr9 69191764 69191903 -48670724 - L1MD2 LINE L1 -167 6192 6005 2300 157 33 23 chr9 69191938 69192365 -48670262 + L1MD1 LINE L1 5530 5960 -282 688 261 246 24 chr9 69192600 69193091 -48669536 + MLT2E LTR ERVL 20 619 -9 1665 203 16 14 chr9 69195426 69195798 -48666829 + Tigger3(Golem) DNA MER2_type 1 3028 -1 238 0 286 0 chr9 69195887 69195922 -48666705 - MLT2B1 LTR ERVL 0 414 370 1837 109 16 4 chr9 69196112 69196369 -48666258 + AluSp SINE Alu 1 260 -53 684 86 0 0 chr9 69196369 69196462 -48666165 + AluSp/q SINE Alu 211 303 -10 938 145 159 6 chr9 69196488 69196694 -48665933 - MLT2B1 LTR ERVL -183 231 2 270 244 44 56 chr9 69196816 69196906 -48665721 - MLT1G1 LTR MaLR -38 517 429 508 265 64 67 chr9 69196964 69197277 -48665350 - MLT1G1 LTR MaLR -275 320 9 2293 121 118 18 chr9 69197299 69197688 -48664939 - MSTA LTR MaLR 0 428 1 393 215 13 0 chr9 69197697 69197776 -48664851 + Charlie4 DNA MER1_type 1862 1941 -20 1948 114 3 50 chr9 69197949 69198272 -48664355 - AluSx SINE Alu 0 309 1 1952 155 0 0 chr9 69198299 69198595 -48664032 + AluSx SINE Alu 1 296 -16 203 59 0 29 chr9 69199496 69199530 -48663097 + (GGGA)n Simple_repeat Simple_repeat 3 35 0 2376 87 3 0 chr9 69199990 69200288 -48662339 + AluSp SINE Alu 1 299 -14 24 0 0 0 chr9 69202651 69202675 -48659952 + AT_rich Low_complexity Low_complexity 1 24 0 277 302 97 25 chr9 69203290 69203568 -48659059 + L2 LINE L2 1612 1909 -1405 456 275 143 59 chr9 69203587 69203847 -48658780 - L2 LINE L2 -761 2553 2316 1682 189 45 0 chr9 69203847 69204138 -48658489 + AluJb SINE Alu 1 304 -8 456 275 143 59 chr9 69204138 69204382 -48658245 - L2 LINE L2 -998 2316 2007 2071 178 58 8 chr9 69204486 69204863 -48657764 - MSTD LTR MaLR 0 396 1 2018 156 73 52 chr9 69206139 69206561 -48656066 + MER4B LTR ERV1 1 431 -179 1587 115 51 0 chr9 69206587 69206804 -48655823 - AluSx SINE Alu -84 228 1 1490 100 0 5 chr9 69206804 69207004 -48655623 + MER4E LTR ERV1 568 766 0 255 284 86 43 chr9 69207066 69207182 -48655445 + MER5A DNA MER1_type 13 133 -56 4020 179 47 18 chr9 69207933 69208355 -48654272 + L1MD1 LINE L1 5365 5773 -469 4794 146 85 7 chr9 69208355 69209193 -48653434 - MER4D LTR ERV1 0 903 1 4020 179 47 18 chr9 69209193 69209623 -48653004 + L1MD1 LINE L1 5773 6242 0 2586 55 0 3 chr9 69209857 69210168 -48652459 - AluY SINE Alu -1 310 1 2212 95 3 55 chr9 69210472 69210797 -48651830 - AluSx SINE Alu -4 308 1 2000 165 128 49 chr9 69211255 69211865 -48650762 - MER4D LTR ERV1 -2 901 1 615 240 7 19 chr9 69211865 69212018 -48650609 - MLT1F LTR MaLR -11 531 381 2421 82 7 0 chr9 69212046 69212352 -48650275 + AluSp SINE Alu 1 308 -5 1821 203 31 17 chr9 69212399 69212751 -48649876 + MER21B LTR ERV1 15 371 -492 1248 192 107 69 chr9 69212751 69213173 -48649454 - LTR8A LTR ERV1 0 727 290 351 222 31 142 chr9 69213355 69213517 -48649110 - LTR8 LTR ERV1 -547 144 1 2102 201 56 62 chr9 69213517 69213576 -48649051 + MER21B LTR ERV1 368 426 -437 3002 66 121 0 chr9 69213576 69213931 -48648696 + MLT2A1 LTR ERVL 1 410 -34 208 53 53 0 chr9 69213931 69213969 -48648658 + (TA)n Simple_repeat Simple_repeat 2 41 0 3002 66 121 0 chr9 69213969 69214009 -48648618 + MLT2A1 LTR ERVL 410 444 0 2102 201 56 62 chr9 69214009 69214447 -48648180 + MER21B LTR ERV1 426 862 -1 814 253 114 0 chr9 69214461 69214706 -48647921 + L1MB7 LINE L1 5902 6174 -10 1487 213 90 12 chr9 69214736 69215079 -48647548 - MLT1F LTR MaLR -168 374 5 312 27 0 0 chr9 69215210 69215247 -48647380 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 693 229 0 0 chr9 69215248 69215366 -48647261 - FLAM_C SINE Alu -24 119 2 342 0 0 0 chr9 69215407 69215445 -48647182 + (TG)n Simple_repeat Simple_repeat 1 38 0 270 0 0 0 chr9 69215444 69215474 -48647153 + (GA)n Simple_repeat Simple_repeat 1 30 0 * 1070 232 42 10 chr9 69215718 69216024 -48646603 - L1M4 LINE L1 -1304 4842 4527 1959 143 0 11 chr9 69218431 69218741 -48643886 + AluSx SINE Alu 1 307 0 1593 90 5 0 chr9 69218741 69218941 -48643686 + AluSg SINE Alu 1 201 -109 18682 143 26 40 chr9 69218969 69220211 -48642416 + L1M1 LINE L1 196 1454 -6111 2679 99 6 6 chr9 69220211 69220575 -48642052 + THE1B LTR MaLR 1 364 0 18682 143 26 40 chr9 69220575 69222585 -48640042 + L1M1 LINE L1 1454 3402 -4163 1991 142 62 3 chr9 69223867 69224206 -48638421 - MLT1B LTR MaLR -31 359 1 831 269 37 8 chr9 69224955 69225106 -48637521 + MIR SINE MIR 1 163 -99 1899 176 23 29 chr9 69225106 69225452 -48637175 - MER2 DNA MER2_type 0 344 1 831 269 37 8 chr9 69225452 69225545 -48637082 + MIR SINE MIR 163 252 -10 2237 131 6 29 chr9 69226069 69226413 -48636214 + MER1B DNA MER1_type 2 337 0 387 41 0 0 chr9 69227557 69227606 -48635021 + (TC)n Simple_repeat Simple_repeat 1 49 0 369 0 0 0 chr9 69228131 69228172 -48634455 + (CA)n Simple_repeat Simple_repeat 1 41 0 734 266 157 30 chr9 69229618 69229956 -48632671 - LTR16C LTR ERVL 0 491 111 351 309 36 0 chr9 69230405 69230515 -48632112 + MLT1G1 LTR MaLR 3 116 -479 2610 129 8 0 chr9 69230515 69230896 -48631731 + MLT1B LTR MaLR 1 384 -6 545 230 162 72 chr9 69230902 69231196 -48631431 + MLT1G3 LTR MaLR 34 366 -176 404 257 50 0 chr9 69231199 69231300 -48631327 + MLT1G3 LTR MaLR 482 587 -3 231 295 28 0 chr9 69231305 69231406 -48631221 - MIR SINE MIR -38 170 66 2098 104 0 0 chr9 69231776 69232076 -48630551 - AluSx SINE Alu 0 315 16 271 298 26 9 chr9 69233363 69233477 -48629150 - MER5B DNA MER1_type -1 177 62 6850 120 24 14 chr9 69234377 69235301 -48627326 - Tigger1 DNA MER2_type 0 2418 1480 2469 90 0 0 chr9 69235301 69235612 -48627015 - AluY SINE Alu 0 311 1 6850 120 24 14 chr9 69235612 69235715 -48626912 - Tigger1 DNA MER2_type -938 1480 1380 259 151 0 0 chr9 69235761 69235814 -48626813 + L1P LINE L1 5172 5224 -922 6364 193 33 7 chr9 69235821 69237965 -48624662 + L1PA15 LINE L1 4021 6164 -1 9024 126 14 14 chr9 69237970 69239350 -48623277 - Tigger1 DNA MER2_type -1011 1407 28 245 195 0 0 chr9 69240094 69240135 -48622492 + Charlie5 DNA MER1_type 2545 2585 -27 258 341 125 23 chr9 69241413 69241589 -48621038 - MIR SINE MIR -21 241 48 1576 150 98 46 chr9 69241628 69241954 -48620673 - MER2 DNA MER2_type 0 344 2 183 129 0 0 chr9 69241991 69242022 -48620605 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 397 278 213 14 chr9 69242378 69242594 -48620033 - MIR SINE MIR 0 262 4 444 18 35 0 chr9 69242686 69242743 -48619884 - L1PA7 LINE L1 0 6154 6096 2433 58 14 2 chr9 69242743 69243173 -48619454 + L1P3 LINE L1 5135 5567 -587 961 234 102 9 chr9 69244245 69244511 -48618116 - MLT1A1 LTR MaLR 0 365 60 1915 132 11 0 chr9 69244511 69244791 -48617836 - AluJb SINE Alu 0 312 30 961 234 102 9 chr9 69244791 69244858 -48617769 - MLT1A1 LTR MaLR -305 60 1 207 256 0 0 chr9 69246097 69246136 -48616491 + polypurine Low_complexity Low_complexity 5 43 0 376 248 105 17 chr9 69248040 69248250 -48614377 - L1ME LINE L1 -736 5434 5196 * 490 221 29 44 chr9 69248245 69248449 -48614178 - L1ME LINE L1 -1450 4696 4496 525 329 24 45 chr9 69248472 69248521 -48614106 - L1ME LINE L1 -2118 4028 3979 2614 32 6 16 chr9 69248521 69248835 -48613792 - AluY SINE Alu 0 311 1 525 329 24 45 chr9 69248835 69249204 -48613423 - L1ME LINE L1 -2167 3979 3619 2747 95 0 8 chr9 69249204 69249571 -48613056 + THE1B LTR MaLR 1 364 0 755 174 15 0 chr9 69249573 69249705 -48612922 - MSTD LTR MaLR 0 396 263 497 246 89 1 chr9 69249703 69249848 -48612779 - MSTC LTR MaLR -295 162 1 * 25 31 0 0 chr9 69250132 69250164 -48612463 + AT_rich Low_complexity Low_complexity 1 32 0 441 208 215 7 chr9 69250327 69250481 -48612146 + MER5A DNA MER1_type 4 189 0 4016 176 25 25 chr9 69250516 69251145 -48611482 + MER44D DNA MER2_type 8 511 -1976 2098 67 0 0 chr9 69251145 69251398 -48611229 + AluY SINE Alu 44 296 -15 4016 176 25 25 chr9 69251398 69251494 -48611133 + MER44D DNA MER2_type 510 605 0 462 301 172 54 chr9 69251797 69252477 -48610150 - L1ME LINE L1 -2722 3424 2665 311 257 27 0 chr9 69252735 69252809 -48609818 + MLT1L LTR MaLR 316 391 -224 672 117 9 2 chr9 69253589 69253841 -48608786 + AluSx SINE Alu 1 304 0 217 364 80 12 chr9 69254140 69254302 -48608325 + MIR SINE MIR 70 242 -20 523 211 10 0 chr9 69254533 69254637 -48607990 + Tigger3(Golem) DNA MER2_type 1 105 -2924 5818 114 33 38 chr9 69254645 69255618 -48607009 + Tigger3(Golem) DNA MER2_type 2061 3028 -1 486 257 0 48 chr9 69255618 69255805 -48606822 + (TATG)n Simple_repeat Simple_repeat 2 179 0 2440 84 3 3 chr9 69256533 69256842 -48605785 - AluSc SINE Alu 0 309 1 1682 84 9 9 chr9 69257082 69257309 -48605318 + AluSg/x SINE Alu 71 297 -13 348 309 14 22 chr9 69257324 69257463 -48605164 - MIR SINE MIR -17 245 108 2156 179 103 138 chr9 69257949 69258844 -48603783 + L1MC4a LINE L1 6946 7808 0 537 263 108 40 chr9 69259295 69259667 -48602960 - L1MC4a LINE L1 -1911 5897 5501 1956 153 0 0 chr9 69259759 69260034 -48602593 + AluSx SINE Alu 1 275 -37 209 32 0 32 chr9 69260042 69260073 -48602554 + (GGGAA)n Simple_repeat Simple_repeat 2 31 0 571 199 17 17 chr9 69260278 69260454 -48602173 + GA-rich Low_complexity Low_complexity 1 176 0 240 287 113 41 chr9 69260472 69260667 -48601960 - L1MC4a LINE L1 -1299 4847 4639 21 0 0 0 chr9 69260807 69260828 -48601799 + AT_rich Low_complexity Low_complexity 1 21 0 255 270 39 16 chr9 69261052 69261185 -48601442 - L1MC4a LINE L1 -1834 4312 4176 208 293 94 19 chr9 69261191 69261269 -48601358 + L2 LINE L2 3187 3276 -37 2197 126 33 33 chr9 69261269 69261633 -48600994 + THE1B LTR MaLR 1 364 0 208 293 94 19 chr9 69261633 69261660 -48600967 + L2 LINE L2 3276 3300 -13 211 216 0 0 chr9 69261679 69261716 -48600911 + polypurine Low_complexity Low_complexity 3 39 0 2412 35 45 3 chr9 69261750 69262036 -48600591 - AluY SINE Alu -13 298 1 218 356 19 0 chr9 69262294 69262398 -48600229 - MIR SINE MIR -6 256 151 296 252 15 59 chr9 69262551 69262686 -48599941 + MARNA DNA Mariner 276 404 -182 3192 129 18 69 chr9 69262728 69262916 -48599711 + L1MB3 LINE L1 5591 5787 -396 270 0 0 0 chr9 69262916 69262946 -48599681 + (TG)n Simple_repeat Simple_repeat 2 31 0 3192 129 18 69 chr9 69262946 69263087 -48599540 + L1MB3 LINE L1 5787 5934 -249 2268 118 0 0 chr9 69263087 69263392 -48599235 + AluSx SINE Alu 1 305 -7 3192 129 18 69 chr9 69263392 69263683 -48598944 + L1MB3 LINE L1 5934 6180 -3 2202 122 54 23 chr9 69263972 69264325 -48598302 - THE1B LTR MaLR 0 364 1 4042 192 53 16 chr9 69264454 69265810 -48596817 + L1MB7 LINE L1 4730 6137 -47 2427 91 3 0 chr9 69265899 69266197 -48596430 - AluSp SINE Alu -14 299 1 285 29 0 0 chr9 69266681 69266715 -48595912 + (TG)n Simple_repeat Simple_repeat 1 34 0 1958 135 10 36 chr9 69267172 69267476 -48595151 + AluSx SINE Alu 1 296 -16 221 56 0 28 chr9 69267665 69267701 -48594926 + (TAA)n Simple_repeat Simple_repeat 2 36 0 1867 122 17 61 chr9 69267710 69268036 -48594591 + AluSx SINE Alu 1 313 0 294 73 0 0 chr9 69268160 69268201 -48594426 + (CA)n Simple_repeat Simple_repeat 2 42 0 415 204 24 5 chr9 69268411 69268503 -48594124 - MLT2C1 LTR ERVL -38 477 277 798 215 72 158 chr9 69268503 69268803 -48593824 - MER34B LTR ERV1 0 565 343 2408 85 0 0 chr9 69268803 69269096 -48593531 + AluSg SINE Alu 1 293 -17 798 215 72 158 chr9 69269096 69269409 -48593218 - MER34B LTR ERV1 -222 343 5 * 1197 219 33 11 chr9 69269391 69269661 -48592966 - MLT2C1 LTR ERVL -94 303 28 183 138 52 52 chr9 69269796 69269854 -48592773 + L2 LINE L2 622 679 -2635 342 67 0 0 chr9 69270487 69270532 -48592095 + (TCCA)n Simple_repeat Simple_repeat 1 45 0 2173 106 17 7 chr9 69270559 69270851 -48591776 + AluSx SINE Alu 3 297 -15 189 309 36 0 chr9 69271196 69271251 -48591376 - L2 LINE L2 -17 3255 3199 864 306 76 25 chr9 69271622 69272332 -48590295 - L1MC4 LINE L1 -15 8027 7268 1140 209 80 52 chr9 69272486 69272987 -48589640 - MER34B LTR ERV1 -2 583 4 1655 95 18 0 chr9 69273645 69273867 -48588760 + AluSg/x SINE Alu 87 312 0 257 273 73 9 chr9 69273889 69273999 -48588628 + MER112 DNA MER1_type 133 249 -11 1741 236 74 16 chr9 69274238 69274726 -48587901 + LTR31 LTR ERV1 69 584 -35 351 113 0 0 chr9 69275192 69275245 -48587382 + (TTTG)n Simple_repeat Simple_repeat 2 54 0 304 54 0 0 chr9 69275276 69275313 -48587314 - tRNA-Tyr-TAC tRNA tRNA -39 37 1 360 0 0 0 chr9 69275408 69275448 -48587179 + (CA)n Simple_repeat Simple_repeat 1 40 0 213 121 0 0 chr9 69275681 69275714 -48586913 + (TC)n Simple_repeat Simple_repeat 1 33 0 211 333 0 0 chr9 69275752 69275806 -48586821 - L2 LINE L2 -215 3057 3004 828 235 54 76 chr9 69276698 69277106 -48585521 + MER34 LTR ERV1 1 399 -143 1927 110 3 50 chr9 69277168 69277467 -48585160 - AluSx SINE Alu -27 285 1 1851 102 3 92 chr9 69277467 69277770 -48584857 - AluSx SINE Alu -36 276 1 441 204 8 26 chr9 69277781 69277902 -48584725 + MER34 LTR ERV1 431 541 -1 371 266 116 84 chr9 69277911 69278047 -48584580 + MLT1H LTR MaLR 118 248 -301 1103 196 56 9 chr9 69278047 69278261 -48584366 + MER58A DNA MER1_type 1 224 0 371 266 116 84 chr9 69278261 69278538 -48584089 + MLT1H LTR MaLR 248 544 -5 1910 188 115 31 chr9 69279824 69280304 -48582323 - MLT2B1 LTR ERVL 0 520 1 2045 162 148 113 chr9 69280522 69281224 -48581403 - LTR8A LTR ERV1 0 727 1 2012 99 52 0 chr9 69281309 69281581 -48581046 - AluSg1 SINE Alu -23 286 1 2550 154 18 18 chr9 69281710 69282144 -48580483 - Tigger2a DNA MER2_type 0 434 1 619 186 87 75 chr9 69282947 69283199 -48579428 - MLT1G LTR MaLR -304 286 32 249 271 62 31 chr9 69283199 69283295 -48579332 + MIR SINE MIR 159 257 -5 337 342 101 0 chr9 69283661 69283819 -48578808 + MER5B DNA MER1_type 5 178 0 370 223 204 0 chr9 69283843 69283976 -48578651 - MER5A DNA MER1_type -21 168 4 548 259 22 0 chr9 69284644 69284779 -48577848 - MER58A DNA MER1_type 0 150 13 268 212 45 15 chr9 69284788 69284854 -48577773 - MER5A DNA MER1_type 0 189 122 554 165 44 57 chr9 69284870 69284897 -48577730 - Charlie5 DNA MER1_type 0 2624 2598 1827 133 3 69 chr9 69284897 69285050 -48577577 + AluJo SINE Alu 1 124 -188 1722 124 4 0 chr9 69285050 69285291 -48577336 + AluSx SINE Alu 54 295 -17 1827 133 3 69 chr9 69285291 69285454 -48577173 + AluJo SINE Alu 124 296 -16 554 165 44 57 chr9 69285454 69285584 -48577043 - Charlie5 DNA MER1_type -26 2598 2469 383 260 0 0 chr9 69285626 69285703 -48576924 - MER5A DNA MER1_type -102 87 11 721 152 0 95 chr9 69286686 69286844 -48575783 + FRAM SINE Alu 9 151 -25 633 204 24 19 chr9 69286844 69287107 -48575520 + GA-rich Low_complexity Low_complexity 1 264 0 390 295 71 13 chr9 69290818 69291135 -48571492 + MLT1G LTR MaLR 15 289 -241 520 234 63 29 chr9 69292083 69292262 -48570365 - MER5A DNA MER1_type 0 189 4 2135 139 0 3 chr9 69292462 69292763 -48569864 - AluJb SINE Alu 0 312 13 1434 195 153 74 chr9 69292786 69293204 -48569423 - MLT1E2 LTR MaLR 0 626 155 2059 103 14 4 chr9 69293204 69293507 -48569120 + AluSx SINE Alu 1 306 0 1434 195 153 74 chr9 69293507 69293616 -48569011 - MLT1E2 LTR MaLR -471 155 56 544 140 0 0 chr9 69293885 69293978 -48568649 + HSAT4 Satellite centromeric 1 93 -12 2487 60 0 10 chr9 69294428 69294730 -48567897 + AluY SINE Alu 1 299 -12 233 212 26 142 chr9 69294793 69294906 -48567721 - L1ME3 LINE L1 -4 6158 6059 2430 224 71 56 chr9 69294984 69295862 -48566765 - L1ME2 LINE L1 -9 6155 5265 2288 99 3 0 chr9 69295945 69296239 -48566388 + AluSg SINE Alu 1 295 -15 1900 191 0 3 chr9 69296893 69297197 -48565430 - AluJo SINE Alu -9 303 1 1889 246 91 7 chr9 69297198 69297876 -48564751 - L1ME2 LINE L1 -850 5296 4562 7494 164 17 4 chr9 69297877 69299850 -48562777 + L1PB4 LINE L1 3792 5791 -365 261 0 0 0 chr9 69299850 69299879 -48562748 + (TA)n Simple_repeat Simple_repeat 2 30 0 243 0 0 0 chr9 69299880 69299907 -48562720 + (CA)n Simple_repeat Simple_repeat 1 27 0 1720 196 34 8 chr9 69299907 69300264 -48562363 + L1PB4 LINE L1 5783 6148 -8 1176 239 92 53 chr9 69300286 69300348 -48562279 - L1ME2 LINE L1 -1597 4549 4491 2231 125 7 0 chr9 69300348 69300653 -48561974 - AluSx SINE Alu -5 307 1 1176 239 92 53 chr9 69300653 69301010 -48561617 - L1ME2 LINE L1 -1655 4491 4100 315 0 0 0 chr9 69301010 69301045 -48561582 + (GA)n Simple_repeat Simple_repeat 2 36 0 1176 239 92 53 chr9 69301045 69301192 -48561435 - L1ME2 LINE L1 -2046 4100 3960 * 2211 245 52 74 chr9 69301191 69302391 -48560236 + L1M4 LINE L1 2509 3682 -2464 2015 126 0 75 chr9 69302762 69303095 -48559532 + AluSx SINE Alu 1 308 -4 26 0 0 0 chr9 69303539 69303565 -48559062 + AT_rich Low_complexity Low_complexity 1 26 0 2283 95 3 10 chr9 69303566 69303871 -48558756 + AluSx SINE Alu 1 303 -9 410 286 282 16 chr9 69303931 69304176 -48558451 + MER5C DNA MER1_type 9 318 -6 1575 192 114 21 chr9 69306578 69307013 -48555614 + MLT1D LTR MaLR 22 390 -19 356 246 32 79 chr9 69307970 69308096 -48554531 + L2 LINE L2 3192 3311 -2 326 330 152 0 chr9 69308362 69308559 -48554068 + L1MC/D LINE L1 5404 5630 -2178 291 353 8 0 chr9 69308753 69308886 -48553741 + (TG)n Simple_repeat Simple_repeat 2 135 0 292 230 142 35 chr9 69308981 69309094 -48553533 - MIR SINE MIR -62 200 76 2360 91 3 3 chr9 69310074 69310372 -48552255 + AluSp SINE Alu 1 298 -15 321 231 154 64 chr9 69310410 69310566 -48552061 + MER5B DNA MER1_type 1 170 -8 432 259 24 63 chr9 69310962 69311114 -48551513 + MLT1D LTR MaLR 346 490 -65 2227 99 31 0 chr9 69311114 69311406 -48551221 + AluSx SINE Alu 1 301 -11 432 259 24 63 chr9 69311406 69311458 -48551169 + MLT1D LTR MaLR 490 542 -13 2224 110 17 3 chr9 69311908 69312200 -48550427 + AluSg SINE Alu 1 296 -14 326 246 32 79 chr9 69363255 69363381 -48499246 - L2 LINE L2 -2 3311 3192 1390 193 118 25 chr9 69364349 69364748 -48497879 - MLT1D LTR MaLR -23 482 47 453 256 24 36 chr9 69366845 69367013 -48495614 - L2 LINE L2 -1612 1702 1537 588 264 19 0 chr9 69367022 69367177 -48495450 - MER52A LTR ERV1 0 1755 1598 979 226 36 120 chr9 69367192 69367712 -48494915 - MER52A LTR ERV1 -45 749 545 658 299 11 0 chr9 69367748 69367925 -48494702 - LTR28 LTR ERV1 -841 179 1 625 242 210 0 chr9 69367932 69368184 -48494443 - L2 LINE L2 -1795 1519 1215 541 214 138 92 chr9 69368295 69368558 -48494069 - MLT1E2 LTR MaLR -308 318 38 2759 156 7 0 chr9 69368558 69368981 -48493646 + MSTB LTR MaLR 1 426 0 541 214 138 92 chr9 69368981 69369021 -48493606 - MLT1E2 LTR MaLR -588 38 1 238 241 106 0 chr9 69369087 69369228 -48493399 - HAL1b LINE L1 -542 806 651 406 296 58 32 chr9 69369266 69369455 -48493172 - HAL1b LINE L1 -761 587 394 402 248 60 15 chr9 69370181 69370314 -48492313 + L1M4 LINE L1 3544 3682 -2464 1887 123 0 77 chr9 69370696 69371022 -48491605 + AluSx SINE Alu 12 312 0 26 0 0 0 chr9 69371462 69371488 -48491139 + AT_rich Low_complexity Low_complexity 1 26 0 2160 95 3 10 chr9 69371489 69371794 -48490833 + AluSx SINE Alu 1 303 -9 411 286 282 16 chr9 69371854 69372099 -48490528 + MER5C DNA MER1_type 9 318 -6 226 100 50 0 chr9 69373037 69373077 -48489550 - Alu SINE Alu -257 42 1 2167 103 10 3 chr9 69373116 69373416 -48489211 + AluSq SINE Alu 1 302 -11 1037 134 37 12 chr9 69373830 69373994 -48488633 - FRAM SINE Alu -16 160 1 1571 164 11 8 chr9 69374344 69374612 -48488015 - Tigger7 DNA MER2_type 0 2487 2219 1043 194 0 0 chr9 69374623 69374793 -48487834 - Tigger7 DNA MER2_type -2316 171 2 1053 210 213 39 chr9 69374954 69375368 -48487259 - L1ME1 LINE L1 -5 6161 5677 463 280 95 24 chr9 69375497 69375665 -48486962 - MER5A DNA MER1_type 0 189 10 273 359 8 0 chr9 69376283 69376414 -48486213 + (TG)n Simple_repeat Simple_repeat 2 133 0 240 216 157 59 chr9 69376484 69376586 -48486041 - MIR SINE MIR -35 227 116 2322 91 3 3 chr9 69377607 69377905 -48484722 + AluSp SINE Alu 1 298 -15 421 202 160 17 chr9 69377980 69378099 -48484528 - MER5B DNA MER1_type -34 144 9 450 259 24 63 chr9 69378495 69378647 -48483980 + MLT1H1 LTR MaLR 346 490 -65 2165 103 31 0 chr9 69378647 69378939 -48483688 + AluSx SINE Alu 1 301 -11 450 259 24 63 chr9 69378939 69378991 -48483636 + MLT1H1 LTR MaLR 490 542 -13 2178 110 17 3 chr9 69379441 69379732 -48482895 + AluSg SINE Alu 1 295 -15 441 36 0 0 chr9 69380131 69380186 -48482441 + (TATG)n Simple_repeat Simple_repeat 2 56 0 1851 124 4 4 chr9 69380186 69380460 -48482167 - AluSx SINE Alu -29 283 10 406 288 78 0 chr9 69381141 69381346 -48481281 + LTR16A LTR ERVL 119 339 -111 201 304 88 56 chr9 69381393 69381518 -48481109 - MIR SINE MIR -111 151 23 729 153 33 27 chr9 69382048 69382198 -48480429 + MLT1D LTR MaLR 355 505 0 261 289 0 37 chr9 69382233 69382368 -48480259 - L1ME4a LINE L1 -189 5932 5803 996 177 0 0 chr9 69382912 69383070 -48479557 - FRAM SINE Alu -17 159 2 387 0 0 0 chr9 69383826 69383869 -48478758 + (TG)n Simple_repeat Simple_repeat 2 44 0 22 0 0 0 chr9 69385370 69385392 -48477235 + AT_rich Low_complexity Low_complexity 1 22 0 241 197 30 0 chr9 69387089 69387155 -48475472 + CT-rich Low_complexity Low_complexity 1 68 0 2120 103 3 3 chr9 69387155 69387445 -48475182 - AluSc SINE Alu -19 290 1 243 246 115 62 chr9 69388999 69389129 -48473498 + MLT1K LTR MaLR 169 305 -283 6658 211 61 44 chr9 69391443 69391649 -48470978 + L1MB7 LINE L1 5 206 -6438 2257 119 0 3 chr9 69391649 69391960 -48470667 - AluSq SINE Alu -3 310 1 6658 211 61 44 chr9 69391960 69395103 -48467524 + L1MB7 LINE L1 206 3443 -3201 2170 197 89 35 chr9 69395103 69395620 -48467007 - MER68 LTR ERV1 -15 547 3 8058 196 59 43 chr9 69395621 69396237 -48466390 + L1MB7 LINE L1 3451 4055 -2627 2272 105 0 0 chr9 69396237 69396531 -48466096 - AluSc SINE Alu -15 294 1 8058 196 59 43 chr9 69396531 69397363 -48465264 + L1MB7 LINE L1 4055 4872 -1810 2865 22 0 0 chr9 69397363 69397679 -48464948 + L1PA4 LINE L1 5840 6155 0 8058 196 59 43 chr9 69397679 69397722 -48464905 + L1MB7 LINE L1 4872 4913 -1769 2384 112 0 0 chr9 69397722 69398034 -48464593 + AluSx SINE Alu 1 312 0 8058 196 59 43 chr9 69398034 69399710 -48462917 + L1MB7 LINE L1 4913 6659 -23 260 252 141 22 chr9 69401794 69401929 -48460698 - L3 LINE CR1 -293 1284 1134 255 347 31 0 chr9 69402031 69402129 -48460498 - MIR SINE MIR -67 141 41 267 326 11 0 chr9 69402157 69402252 -48460375 - L3 LINE CR1 -463 1114 1019 2353 57 3 0 chr9 69402304 69402587 -48460040 - AluY SINE Alu -7 304 21 284 212 71 35 chr9 69402947 69403032 -48459595 - L3 LINE CR1 -870 707 620 200 350 66 15 chr9 69403118 69403255 -48459372 + MIR SINE MIR 36 179 -83 214 337 22 11 chr9 69403304 69403393 -48459234 - L3 LINE CR1 -1060 517 428 1190 199 63 20 chr9 69407292 69407643 -48454984 - L1M4 LINE L1 -3047 3099 2734 2154 146 26 20 chr9 69407950 69408292 -48454335 + MER2 DNA MER2_type 1 344 0 760 264 23 31 chr9 69408909 69409126 -48453501 + MIR SINE MIR 1 217 -45 216 0 0 0 chr9 69409126 69409150 -48453477 + (CA)n Simple_repeat Simple_repeat 2 25 0 760 264 23 31 chr9 69409150 69409193 -48453434 + MIR SINE MIR 217 259 -3 486 194 8 0 chr9 69411191 69411289 -48451338 - MER5A DNA MER1_type -87 102 4 239 271 103 19 chr9 69412242 69412349 -48450278 - L2 LINE L2 -1 3312 3197 228 268 65 65 chr9 69414724 69414847 -48447780 + Charlie8 DNA MER1_type 9 131 -2286 2233 276 92 48 chr9 69414959 69415975 -48446652 + Charlie8 DNA MER1_type 488 1548 -869 3584 171 41 15 chr9 69415981 69416464 -48446163 - L1MB2 LINE L1 -239 5932 5463 1973 181 134 10 chr9 69416464 69416874 -48445753 + LOR1b LTR ERV1 1 461 0 3584 171 41 15 chr9 69416874 69417328 -48445299 - L1MB2 LINE L1 -708 5463 4963 1191 260 77 57 chr9 69417338 69417846 -48444781 + Charlie8 DNA MER1_type 1560 2077 -340 489 145 0 13 chr9 69417895 69417971 -48444656 - FRAM SINE Alu -69 107 33 260 305 25 42 chr9 69418094 69418212 -48444415 + Charlie8 DNA MER1_type 2301 2416 -1 33871 30 14 3 chr9 69418235 69424255 -48438372 - L1PA3 LINE L1 -2 6153 14 734 117 175 53 chr9 69424632 69424786 -48437841 + L1MA7 LINE L1 6060 6247 -44 1512 158 61 27 chr9 69424786 69425083 -48437544 + AluJo SINE Alu 1 307 -5 734 117 175 53 chr9 69425083 69425134 -48437493 + L1MA7 LINE L1 6247 6290 -1 286 237 17 0 chr9 69425441 69425500 -48437127 - MER5A DNA MER1_type -79 110 51 435 253 227 27 chr9 69425709 69426149 -48436478 - L2 LINE L2 -19 3294 2743 2197 149 53 17 chr9 69426214 69426630 -48435997 - MER65A LTR ERV1 0 445 15 680 312 149 30 chr9 69427317 69428310 -48434317 - L2 LINE L2 -2 3311 2160 597 294 149 6 chr9 69428437 69428753 -48433874 + MLT1L LTR MaLR 243 603 -12 436 300 113 29 chr9 69428766 69429006 -48433621 - L2 LINE L2 -1976 1338 1079 237 283 9 71 chr9 69429012 69429125 -48433502 - MIR SINE MIR 0 262 157 * 330 291 87 37 chr9 69429122 69429363 -48433264 - L2 LINE L2 -2232 1082 830 1019 166 9 113 chr9 69430177 69430503 -48432124 - L1MC5 LINE L1 -908 7053 6762 685 258 74 63 chr9 69430874 69431238 -48431389 - MLT1J LTR MaLR -143 368 1 246 128 0 0 chr9 69432421 69432460 -48430167 + (CA)n Simple_repeat Simple_repeat 2 40 0 830 234 37 0 chr9 69433229 69433417 -48429210 + MER3 DNA MER1_type 15 209 0 438 222 36 11 chr9 69434615 69434745 -48427882 - MLT1F1 LTR MaLR -5 562 451 376 276 100 37 chr9 69435673 69435914 -48426713 - MIR SINE MIR -3 259 2 339 253 30 10 chr9 69438348 69438447 -48424180 - MIR SINE MIR -45 217 117 1513 221 41 13 chr9 69440320 69440970 -48421657 - L1ME LINE L1 -621 5541 4869 978 195 34 10 chr9 69441353 69441558 -48421069 - MER6B DNA MER2_type 0 210 1 2126 136 13 0 chr9 69441698 69442006 -48420621 + AluJb SINE Alu 1 312 0 2181 117 0 7 chr9 69442413 69442711 -48419916 + AluSc SINE Alu 1 296 -13 301 188 35 12 chr9 69442904 69442989 -48419638 + L1ME3 LINE L1 3859 3945 -2201 3035 198 82 31 chr9 69442991 69444029 -48418598 - L1MB7 LINE L1 -9 6175 5086 1294 250 96 11 chr9 69444022 69444678 -48417949 + L1ME3 LINE L1 3928 4639 -1507 * 401 270 36 12 chr9 69444716 69444964 -48417663 + L1ME3 LINE L1 5492 5799 -371 288 240 0 72 chr9 69445035 69445160 -48417467 + L1ME3 LINE L1 5907 6022 -140 250 250 0 24 chr9 69445180 69445264 -48417363 + L1ME3A LINE L1 6084 6165 -5 349 123 31 0 chr9 69445554 69445619 -48417008 + U4 snRNA snRNA 1 67 -78 331 270 117 0 chr9 69446052 69446189 -48416438 - MER20B DNA MER1_type -630 153 1 1899 229 122 40 chr9 69446197 69446450 -48416177 - Charlie2 DNA MER1_type 0 2862 2631 2091 122 7 0 chr9 69446450 69446746 -48415881 + AluSx SINE Alu 1 298 -14 1899 229 122 40 chr9 69446746 69446773 -48415854 - Charlie2 DNA MER1_type -231 2631 2608 3668 146 81 15 chr9 69446773 69447450 -48415177 - MER72 LTR ERV1 0 722 1 1899 229 122 40 chr9 69447450 69448053 -48414574 - Charlie2 DNA MER1_type -254 2608 1905 1673 180 158 32 chr9 69448442 69448904 -48413723 + MLT2B1 LTR ERVL 1 520 0 251 317 19 0 chr9 69448970 69449074 -48413553 - U6 snRNA snRNA -1 106 1 395 234 11 0 chr9 69449079 69449173 -48413454 + L2 LINE L2 1829 1923 -1391 958 294 119 24 chr9 69449252 69450185 -48412442 - L1M4 LINE L1 -2441 3705 2684 753 184 68 14 chr9 69450236 69450443 -48412184 - Looper DNA T2_type 0 1558 1341 227 208 39 0 chr9 69450445 69450522 -48412105 + (CATATA)n Simple_repeat Simple_repeat 2 81 0 2017 133 7 17 chr9 69450580 69450882 -48411745 + AluSx SINE Alu 1 299 -13 213 121 0 0 chr9 69450913 69450946 -48411681 + (A)n Simple_repeat Simple_repeat 1 33 0 1807 186 35 17 chr9 69450946 69451350 -48411277 - Looper DNA T2_type -271 1287 877 343 235 92 31 chr9 69451365 69451463 -48411164 + L2 LINE L2 3210 3313 0 204 296 141 55 chr9 69452407 69452627 -48410000 + L2 LINE L2 1514 1752 -1562 576 229 113 46 chr9 69452629 69452662 -48409965 + L1MC4a LINE L1 5835 5864 -1944 2028 81 0 26 chr9 69452662 69452933 -48409694 - AluSq SINE Alu -21 292 29 576 229 113 46 chr9 69452933 69453244 -48409383 + L1MC4a LINE L1 5864 6202 -1606 439 195 0 0 chr9 69453362 69453444 -48409183 - Tigger5 DNA MER2_type 0 2323 2242 507 120 11 68 chr9 69453446 69453559 -48409068 - Tigger5 DNA MER2_type 0 2323 4 917 176 140 116 chr9 69453559 69453939 -48408688 + L1MC4a LINE L1 6360 6733 -1075 240 361 64 18 chr9 69454050 69454393 -48408234 + L1MEc LINE L1 201 559 -5837 294 229 178 25 chr9 69455086 69455204 -48407423 + MER58C DNA MER1_type 78 213 -2 234 294 131 66 chr9 69455878 69456228 -48406399 - L2 LINE L2 -3 3310 2938 1420 169 222 5 chr9 69456286 69456700 -48405927 - MLT1D LTR MaLR -1 504 1 300 248 186 26 chr9 69456716 69456829 -48405798 - L2 LINE L2 -571 2743 2613 2177 129 55 70 chr9 69457024 69457464 -48405163 + Tigger2a DNA MER2_type 1 433 -1 395 256 141 4 chr9 69457471 69457713 -48404914 + L1M4 LINE L1 3035 3309 -2837 2359 103 0 0 chr9 69457713 69458014 -48404613 + AluSx SINE Alu 1 301 -11 2519 53 0 28 chr9 69458656 69458976 -48403651 - AluY SINE Alu 0 311 1 259 146 0 21 chr9 69459083 69459131 -48403496 - AluSq SINE Alu -255 47 1 653 314 109 51 chr9 69459140 69459821 -48402806 - L1M4 LINE L1 -1823 4323 3604 1309 211 10 13 chr9 69460507 69460811 -48401816 - MER58B DNA MER1_type -8 333 31 2038 130 17 0 chr9 69462040 69462333 -48400294 - AluSx SINE Alu -14 298 1 244 229 78 50 chr9 69463795 69463974 -48398653 - L1ME LINE L1 -357 5805 5622 376 274 8 17 chr9 69464389 69464506 -48398121 + Charlie1a DNA MER1_type 92 207 -1248 540 179 144 17 chr9 69464508 69464681 -48397946 + Charlie1a DNA MER1_type 1260 1454 -1 31 44 0 0 chr9 69465117 69465162 -48397465 + AT_rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr9 69465343 69465365 -48397262 + AT_rich Low_complexity Low_complexity 1 22 0 310 314 83 31 chr9 69465561 69465758 -48396869 - L1ME LINE L1 -792 5552 5340 1807 145 7 20 chr9 69465758 69466062 -48396565 - AluJo SINE Alu -1 311 12 310 314 83 31 chr9 69466062 69466093 -48396534 - L1ME LINE L1 -1004 5340 5312 865 309 91 68 chr9 69466214 69466657 -48395970 - L1ME LINE L1 -1383 4763 4332 2360 99 0 0 chr9 69466657 69466951 -48395676 - AluSc SINE Alu -15 294 1 865 309 91 68 chr9 69466951 69467641 -48394986 - L1ME LINE L1 -1814 4332 3604 1346 211 7 10 chr9 69468327 69468631 -48393996 - MER58B DNA MER1_type -8 333 31 213 139 0 0 chr9 69468871 69468914 -48393713 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 385 272 137 51 chr9 69469171 69469604 -48393023 + L1ME3A LINE L1 2336 2837 -3309 2883 113 24 0 chr9 69469604 69470028 -48392599 - MER57B LTR ERV1 0 434 1 385 272 137 51 chr9 69470028 69470200 -48392427 + L1ME3A LINE L1 2837 2993 -3153 3433 136 54 44 chr9 69470238 69470942 -48391685 - MER50 LTR ERV1 -23 711 1 400 237 58 140 chr9 69471330 69471781 -48390846 - LTR38 LTR ERV1 -14 542 129 487 182 8 58 chr9 69471888 69472009 -48390618 - LTR38B LTR ERV1 -495 115 1 517 287 112 38 chr9 69472041 69472662 -48389965 + L1ME3A LINE L1 3488 4166 -1980 229 302 157 13 chr9 69472761 69473291 -48389336 + L1ME3A LINE L1 4286 4891 -1255 313 250 21 14 chr9 69473381 69473525 -48389102 + L1ME3A LINE L1 5119 5263 -883 459 301 61 67 chr9 69473581 69473927 -48388700 + L1ME3A LINE L1 5326 5649 -515 414 281 37 0 chr9 69474163 69474327 -48388300 + L1ME3A LINE L1 5706 5875 -295 4069 151 25 17 chr9 69474694 69475055 -48387572 - MER72 LTR ERV1 0 722 365 2223 81 0 48 chr9 69475055 69475364 -48387263 + AluSx SINE Alu 1 294 -18 4069 151 25 17 chr9 69475364 69475718 -48386909 - MER72 LTR ERV1 -357 365 1 1695 137 78 0 chr9 69475787 69476071 -48386556 - AluJb SINE Alu -6 306 1 2116 127 0 3 chr9 69476170 69476470 -48386157 + AluSq SINE Alu 1 299 -14 2786 22 0 0 chr9 69476557 69476870 -48385757 - AluYb8 SINE Alu -5 313 1 1148 176 145 54 chr9 69476986 69477434 -48385193 + LTR54B LTR ERV1 8 496 -2 353 154 36 136 chr9 69477486 69477544 -48385083 - MER63 DNA MER1_type 0 1061 1017 1828 151 10 23 chr9 69477544 69477848 -48384779 - AluJb SINE Alu -12 300 1 353 154 36 136 chr9 69477848 69477899 -48384728 - MER63 DNA MER1_type -43 1018 963 184 309 88 15 chr9 69479803 69479871 -48382756 + L2 LINE L2 3172 3244 -28 612 233 204 29 chr9 69480178 69480453 -48382174 - L2 LINE L2 -950 2364 2042 1902 165 14 8 chr9 69480492 69480850 -48381777 - L1PB4 LINE L1 -22 6134 5775 513 198 172 0 chr9 69480850 69480966 -48381661 - L2 LINE L2 -1262 2052 1917 190 336 65 19 chr9 69481115 69481222 -48381405 + MIR SINE MIR 42 153 -55 25 51 0 0 chr9 69481980 69482019 -48380608 + AT_rich Low_complexity Low_complexity 1 39 0 1631 201 77 35 chr9 69482275 69482757 -48379870 - MLT1D LTR MaLR -3 502 1 1067 205 46 113 chr9 69483078 69483469 -48379158 - MLT1A1 LTR MaLR 0 365 1 877 160 53 27 chr9 69483858 69484008 -48378619 - AluJb SINE Alu -158 154 1 333 0 0 0 chr9 69484511 69484548 -48378079 + (TG)n Simple_repeat Simple_repeat 1 37 0 258 156 0 0 chr9 69484958 69485003 -48377624 + A-rich Low_complexity Low_complexity 1 45 0 411 215 35 0 chr9 69485008 69485180 -48377447 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 1660 141 130 0 chr9 69485256 69485526 -48377101 + AluSx SINE Alu 2 306 -6 272 233 58 0 chr9 69485526 69485629 -48376998 - Charlie7 DNA MER1_type -2474 138 30 2112 94 10 29 chr9 69486246 69486555 -48376072 - AluSp SINE Alu -10 303 1 368 167 60 0 chr9 69486671 69486755 -48375872 + MER31-int LTR ERV1 2706 2794 -2142 2304 92 3 3 chr9 69486755 69487060 -48375567 - AluSq SINE Alu -8 305 1 2410 80 7 3 chr9 69487498 69487798 -48374829 - AluSc SINE Alu -8 301 1 376 274 8 17 chr9 69488311 69488428 -48374199 + Charlie1a DNA MER1_type 92 207 -1248 540 179 144 17 chr9 69488430 69488603 -48374024 + Charlie1a DNA MER1_type 1260 1454 -1 28 48 0 0 chr9 69489039 69489081 -48373546 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr9 69489264 69489286 -48373341 + AT_rich Low_complexity Low_complexity 1 22 0 305 291 136 31 chr9 69489472 69489678 -48372949 - L1MC/D LINE L1 -792 5552 5338 1786 148 7 20 chr9 69489678 69489982 -48372645 - AluJo SINE Alu -1 311 12 305 291 136 31 chr9 69489982 69490013 -48372614 - L1MC/D LINE L1 -1006 5338 5312 474 290 69 68 chr9 69490123 69490576 -48372051 - L1MC/D LINE L1 -1350 4796 4321 2517 37 7 0 chr9 69490577 69490871 -48371756 - AluY SINE Alu -15 296 1 1148 176 145 54 chr9 69490987 69491435 -48371192 + LTR54B LTR ERV1 8 496 -2 353 154 36 136 chr9 69491487 69491545 -48371082 - MER63 DNA MER1_type 0 1062 1018 1828 151 10 23 chr9 69491545 69491849 -48370778 - AluJb SINE Alu -12 300 1 353 154 36 136 chr9 69491849 69491900 -48370727 - MER63 DNA MER1_type -43 1019 964 184 309 88 15 chr9 69493804 69493872 -48368755 + L2 LINE L2 3172 3244 -28 616 228 199 29 chr9 69494178 69494454 -48368173 - L2 LINE L2 -950 2364 2042 1902 165 14 8 chr9 69494493 69494851 -48367776 - L1PB4 LINE L1 -22 6134 5775 513 198 172 0 chr9 69494851 69494967 -48367660 - L2 LINE L2 -1262 2052 1917 634 120 19 18 chr9 69494968 69495097 -48367530 + MSTA LTR MaLR 1 135 -229 249 361 0 0 chr9 69495725 69495797 -48366830 - MER5A DNA MER1_type -108 81 10 477 282 178 9 chr9 69496478 69496691 -48365936 + MIR SINE MIR 9 257 -5 257 191 22 101 chr9 69496725 69496814 -48365813 - MIR SINE MIR -127 135 54 496 181 0 95 chr9 69497322 69497438 -48365189 - Tigger7 DNA MER2_type -444 106 2 2378 58 10 7 chr9 69498710 69499001 -48363626 + AluY SINE Alu 1 292 -19 2193 109 3 16 chr9 69499550 69499716 -48362911 - AluSx SINE Alu -12 300 133 201 94 0 0 chr9 69499716 69499748 -48362879 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 2175 93 4 0 chr9 69499748 69500017 -48362610 - AluSp SINE Alu -31 282 13 2193 109 3 16 chr9 69500017 69500153 -48362474 - AluSx SINE Alu -177 135 1 687 191 0 0 chr9 69500799 69500914 -48361713 - FLAM_C SINE Alu -28 115 1 603 168 0 0 chr9 69500983 69501078 -48361549 - MER21B LTR ERV1 -767 96 2 186 245 102 0 chr9 69501447 69501496 -48361131 - L2 LINE L2 -234 3038 2985 328 303 235 20 chr9 69501673 69502383 -48360244 - L2 LINE L2 -540 2774 1834 2249 92 10 3 chr9 69503096 69503400 -48359227 - AluSx SINE Alu -6 306 1 262 193 143 14 chr9 69504016 69504156 -48358471 + L1ME4a LINE L1 5748 5905 -216 971 166 6 12 chr9 69504582 69504745 -48357882 + FRAM SINE Alu 2 163 -3 416 204 199 61 chr9 69505002 69505183 -48357444 - MIR SINE MIR -24 238 33 479 198 0 0 chr9 69505391 69505472 -48357155 + FLAM SINE Alu 46 126 -17 14180 123 21 21 chr9 69506490 69507044 -48355583 - Tigger1 DNA MER2_type -38 2380 1827 2241 141 0 32 chr9 69507044 69507420 -48355207 - THE1B LTR MaLR 0 364 1 14180 123 21 21 chr9 69507420 69507767 -48354860 - Tigger1 DNA MER2_type -591 1827 1481 2345 96 0 0 chr9 69507767 69508069 -48354558 - AluSc SINE Alu -7 302 1 14180 123 21 21 chr9 69508069 69509546 -48353081 - Tigger1 DNA MER2_type -936 1482 1 2285 106 0 10 chr9 69509760 69510063 -48352564 + AluSx SINE Alu 3 302 -10 581 89 0 0 chr9 69510390 69510469 -48352158 - AluSc SINE Alu -7 302 224 1080 217 61 39 chr9 69511056 69511416 -48351211 + MLT1C LTR MaLR 81 448 -19 1825 188 7 3 chr9 69511893 69512202 -48350425 - AluJo SINE Alu -2 310 1 192 40 0 0 chr9 69513337 69513362 -48349265 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 256 322 94 20 chr9 69514443 69514698 -48347929 - L1MC4 LINE L1 -197 7845 7572 1433 276 48 4 chr9 69514706 69515203 -48347424 - L1MD3 LINE L1 -10 7985 7467 975 181 91 63 chr9 69515259 69515546 -48347081 - L1MA8 LINE L1 -3 6288 5994 255 103 0 0 chr9 69515557 69515596 -48347031 + (TAGG)n Simple_repeat Simple_repeat 1 39 0 245 335 38 14 chr9 69515610 69515819 -48346808 - L1MC4 LINE L1 -478 7564 7351 504 275 12 0 chr9 69516145 69516305 -48346322 - MARNA DNA Mariner -143 443 282 16506 45 2 1 chr9 69516866 69519699 -48342928 - L1PA5 LINE L1 -1 6153 3314 250 213 3 58 chr9 69519728 69519826 -48342801 + L2 LINE L2 2802 2894 -378 1981 327 50 18 chr9 69519827 69520869 -48341758 - L2 LINE L2 -10 3303 2227 1207 225 51 39 chr9 69520966 69521397 -48341230 + L1MDa LINE L1 1306 1741 -4799 251 228 159 55 chr9 69521400 69521545 -48341082 + L1M4 LINE L1 4865 5024 -1122 692 274 39 59 chr9 69522504 69522548 -48340079 + MIR SINE MIR 13 56 -206 2238 157 67 8 chr9 69522548 69522949 -48339678 + MSTB LTR MaLR 1 425 -1 692 274 39 59 chr9 69522949 69523159 -48339468 + MIR SINE MIR 56 262 0 518 139 30 0 chr9 69523202 69523303 -48339324 - L1MA10 LINE L1 -8 6326 6223 420 221 0 36 chr9 69523344 69523484 -48339143 - L1ME1 LINE L1 -191 5975 5841 * 449 222 209 0 chr9 69523480 69523633 -48338994 - L1MEc LINE L1 -6174 222 38 189 74 0 0 chr9 69524722 69524749 -48337878 + (CATA)n Simple_repeat Simple_repeat 2 28 0 1180 193 0 24 chr9 69525202 69525414 -48337213 - AluJo SINE Alu -87 225 19 1702 158 63 7 chr9 69525904 69526188 -48336439 - AluSx SINE Alu -12 300 1 352 325 127 0 chr9 69527049 69527246 -48335381 + MIR SINE MIR 10 231 -31 443 310 9 0 chr9 69527982 69528095 -48334532 + L2 LINE L2 3154 3267 -5 352 263 85 8 chr9 69529228 69529346 -48333281 + LTR67 LTR ERVL 431 557 0 552 279 93 25 chr9 69529538 69529742 -48332885 - L2 LINE L2 -20 3293 3076 2261 81 13 3 chr9 69530353 69530651 -48331976 + AluSq SINE Alu 1 301 -12 2321 98 0 0 chr9 69533055 69533350 -48329277 + AluSg SINE Alu 1 295 -15 2125 112 3 7 chr9 69533604 69533900 -48328727 + AluSx SINE Alu 1 295 -17 259 299 70 59 chr9 69534980 69535167 -48327460 + MIR SINE MIR 70 258 -4 200 254 0 119 chr9 69535279 69535346 -48327281 + MIR SINE MIR 30 88 -120 2193 92 0 3 chr9 69535927 69536253 -48326374 - AluSg SINE Alu 0 325 1 1064 270 87 73 chr9 69536963 69537564 -48325063 + HAL1 LINE L1 1082 1698 -809 734 178 0 44 chr9 69537564 69537699 -48324928 - FLAM_C SINE Alu -4 129 1 1064 270 87 73 chr9 69537699 69537905 -48324722 + HAL1 LINE L1 1698 1900 -607 259 275 42 37 chr9 69538495 69538684 -48323943 + HAL1 LINE L1 2241 2430 -77 325 139 97 28 chr9 69539693 69539765 -48322862 + MIR SINE MIR 165 241 -21 1103 301 96 43 chr9 69540459 69541659 -48320968 + L1MEc LINE L1 59 1179 -5038 425 248 87 6 chr9 69541661 69541822 -48320805 + MER105 DNA DNA 28 201 -3 3567 261 103 27 chr9 69541829 69543799 -48318828 + L1MEc LINE L1 2062 4337 -1878 2027 120 7 32 chr9 69543799 69544107 -48318520 + AluSx SINE Alu 1 300 -12 3567 261 103 27 chr9 69544107 69544733 -48317894 + L1MEc LINE L1 4337 4914 -1301 229 229 0 33 chr9 69545072 69545133 -48317494 + MLT1J LTR MaLR 1 59 -452 27 0 0 0 chr9 69546316 69546343 -48316284 + AT_rich Low_complexity Low_complexity 1 27 0 233 331 166 0 chr9 69547359 69547504 -48315123 - MIR SINE MIR -18 244 76 383 231 111 0 chr9 69549840 69549948 -48312679 + MIR SINE MIR 132 251 -11 2142 99 0 3 chr9 69550069 69550362 -48312265 + AluSc SINE Alu 1 292 -17 1994 137 0 10 chr9 69552304 69552603 -48310024 - AluSc SINE Alu -13 296 1 1183 152 0 5 chr9 69553343 69553540 -48309087 + MER1A DNA MER1_type 135 330 -199 787 311 34 0 chr9 69553699 69553963 -48308664 - L2 LINE L2 -934 2380 2108 3040 198 26 7 chr9 69554511 69555207 -48307420 + L1 LINE L1 3567 4275 -1871 181 300 50 25 chr9 69555258 69555338 -48307289 + MIR SINE MIR 181 262 0 670 143 4 2 chr9 69555987 69560158 -48302469 + CER Satellite Satellite 1 4179 -19 12724 41 2 1 chr9 69560258 69561903 -48300724 - L1P LINE L1 -1185 4961 3314 243 225 3 58 chr9 69561932 69562030 -48300597 + L2 LINE L2 2802 2894 -378 1011 327 64 22 chr9 69562031 69562767 -48299860 - L2 LINE L2 -10 3303 2536 2640 105 35 94 chr9 69562964 69563591 -48299036 + MER4B LTR ERV1 1 769 -10 2839 231 55 15 chr9 69563592 69564564 -48298063 + L1ME1 LINE L1 3443 4452 -1694 2384 67 0 0 chr9 69564609 69564894 -48297733 + AluY SINE Alu 1 285 -26 1744 197 42 87 chr9 69565108 69565626 -48297001 + MER21B LTR ERV1 41 535 -328 2025 213 124 55 chr9 69565668 69566101 -48296526 - MER21B LTR ERV1 -60 803 296 1587 172 55 21 chr9 69566101 69566278 -48296349 - AluJb SINE Alu -11 301 109 279 0 0 0 chr9 69566278 69566309 -48296318 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1587 172 55 21 chr9 69566309 69566422 -48296205 - AluJb SINE Alu -203 109 1 2025 213 124 55 chr9 69566422 69566730 -48295897 - MER21B LTR ERV1 -567 296 11 2134 237 63 58 chr9 69566737 69566918 -48295709 + L1ME1 LINE L1 4967 5145 -1021 552 66 0 0 chr9 69566918 69566994 -48295633 + L1PA5 LINE L1 6078 6153 -1 2134 237 63 58 chr9 69566994 69567974 -48294653 + L1ME1 LINE L1 5145 6162 -4 263 250 144 10 chr9 69568836 69568940 -48293687 + MIR SINE MIR 134 251 -11 300 317 19 0 chr9 69568968 69569072 -48293555 - L2 LINE L2 -309 2963 2858 219 69 0 0 chr9 69569815 69569844 -48292783 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 630 113 0 21 chr9 69569856 69569953 -48292674 + FRAM SINE Alu 68 162 -14 428 231 66 8 chr9 69570818 69570939 -48291688 - MIR SINE MIR -44 218 91 459 259 69 0 chr9 69570942 69571058 -48291569 - MIR SINE MIR -123 139 16 316 288 34 57 chr9 69571071 69571248 -48291379 + L2 LINE L2 2307 2479 -835 1607 165 8 4 chr9 69571406 69571660 -48290967 - AluSx SINE Alu -57 255 1 330 20 0 0 chr9 69571787 69571836 -48290791 + MER54A LTR ERVL 1 49 -595 2508 175 34 4 chr9 69571836 69572292 -48290335 + MER54A LTR ERVL 225 894 -7 3848 169 74 74 chr9 69572303 69573414 -48289213 + MER52C LTR ERV1 2 1278 0 204 351 67 15 chr9 69573910 69574044 -48288583 + MIR SINE MIR 26 166 -96 1684 152 64 14 chr9 69574053 69574336 -48288291 - AluSx SINE Alu -11 301 5 476 280 115 13 chr9 69574508 69574665 -48287962 - MIR SINE MIR -70 192 20 753 165 23 23 chr9 69574688 69574821 -48287806 - FLAM_C SINE Alu 0 133 1 619 171 0 19 chr9 69575026 69575131 -48287496 + FLAM_C SINE Alu 39 141 -2 719 148 4 8 chr9 69575195 69575316 -48287311 + MSTB1 LTR MaLR 239 432 0 312 304 122 9 chr9 69575664 69575779 -48286848 - MIR SINE MIR -120 142 15 777 230 5 11 chr9 69576061 69576252 -48286375 + L1MB8 LINE L1 5989 6178 0 550 316 56 0 chr9 69576269 69576465 -48286162 + L1MC4 LINE L1 6817 7023 -1019 3854 158 30 9 chr9 69576496 69577175 -48285452 + L1MC3 LINE L1 6418 7110 -675 382 141 70 0 chr9 69577187 69577258 -48285369 - MER67A LTR ERV1 0 543 468 1237 203 13 8 chr9 69577587 69577824 -48284803 - MLT1B LTR MaLR 0 390 153 2174 147 16 50 chr9 69577830 69578269 -48284358 + L1PA16 LINE L1 4895 5347 -819 1874 167 7 13 chr9 69578269 69578575 -48284052 + AluJb SINE Alu 2 305 -7 2174 147 16 50 chr9 69578575 69578690 -48283937 + L1PA16 LINE L1 5347 5464 -702 2084 143 6 40 chr9 69578690 69579039 -48283588 - MER1B DNA MER1_type 0 337 1 2174 147 16 50 chr9 69579039 69579197 -48283430 + L1PA16 LINE L1 5464 5590 -576 1379 67 57 21 chr9 69579201 69579395 -48283232 - AluY SINE Alu -9 302 102 2460 148 32 6 chr9 69579395 69579895 -48282732 + L1PA16 LINE L1 5591 6144 -22 22 0 0 0 chr9 69579895 69579917 -48282710 + AT_rich Low_complexity Low_complexity 1 22 0 651 193 80 7 chr9 69579917 69580067 -48282560 - MLT1B LTR MaLR -229 161 1 271 247 9 71 chr9 69580223 69580337 -48282290 - MIR SINE MIR -97 111 15 845 189 61 0 chr9 69580772 69580920 -48281707 + AluJb SINE Alu 2 158 -154 227 274 42 42 chr9 69581177 69581272 -48281355 - CER Satellite Satellite 0 96 2 932 121 7 7 chr9 69581453 69581593 -48281034 - AluSg/x SINE Alu -76 236 97 1891 152 8 51 chr9 69581594 69581793 -48280834 - MLT1A1 LTR MaLR -24 341 162 1939 164 3 0 chr9 69581793 69582098 -48280529 - AluJb SINE Alu -6 306 1 1891 152 8 51 chr9 69582098 69582254 -48280373 - MLT1A1 LTR MaLR -203 162 1 322 250 34 0 chr9 69582256 69582344 -48280283 + MIR SINE MIR 172 262 0 213 250 0 0 chr9 69582476 69582536 -48280091 + (TA)n Simple_repeat Simple_repeat 1 60 0 2609 68 0 0 chr9 69582647 69582956 -48279671 - AluY SINE Alu -2 309 1 2205 107 0 7 chr9 69583565 69583863 -48278764 - AluSq SINE Alu -17 296 1 282 354 0 0 chr9 69584577 69584659 -48277968 + L2 LINE L2 3165 3246 -26 1170 135 58 43 chr9 69584671 69584762 -48277865 - L1PA15 LINE L1 -7 6158 6070 2318 107 0 7 chr9 69584762 69585070 -48277557 - AluSx SINE Alu -6 306 1 1170 135 58 43 chr9 69585070 69585185 -48277442 - L1PA15 LINE L1 -95 6070 5949 470 198 95 52 chr9 69585641 69585757 -48276870 - MER5B DNA MER1_type -1 177 57 1352 172 96 11 chr9 69585757 69586050 -48276577 - AluJo SINE Alu 0 320 6 461 147 0 0 chr9 69586052 69586120 -48276507 - MER5B DNA MER1_type -110 68 1 2570 105 5 47 chr9 69586120 69586500 -48276127 + THE1B LTR MaLR 1 364 0 915 195 120 105 chr9 69587897 69588018 -48274609 + L1MC4a LINE L1 5795 5913 -1895 1897 125 0 69 chr9 69588018 69588323 -48274304 - AluSx SINE Alu -28 284 1 915 195 120 105 chr9 69588323 69588677 -48273950 + L1MC4a LINE L1 5913 6277 -1531 1536 231 112 53 chr9 69588703 69588975 -48273652 + L1MC4 LINE L1 6821 7076 -966 228 67 0 0 chr9 69588975 69589005 -48273622 + (TGGA)n Simple_repeat Simple_repeat 2 31 0 1536 231 112 53 chr9 69589005 69589480 -48273147 + L1MC4 LINE L1 7076 7612 -430 579 311 89 35 chr9 69589680 69590159 -48272468 - L1MC4a LINE L1 -122 6048 5492 2294 89 0 17 chr9 69590159 69590461 -48272166 + AluY SINE Alu 1 297 -14 579 311 89 35 chr9 69590461 69590705 -48271922 - L1MC4a LINE L1 -678 5492 5263 369 261 14 14 chr9 69590877 69591019 -48271608 - L1MC4a LINE L1 -1082 5064 4923 24 32 0 0 chr9 69592046 69592077 -48270550 + AT_rich Low_complexity Low_complexity 1 31 0 2126 141 0 0 chr9 69592367 69592666 -48269961 + AluSx SINE Alu 1 299 -13 919 142 0 8 chr9 69592678 69592812 -48269815 + FLAM_C SINE Alu 1 133 0 24 53 0 0 chr9 69592901 69592939 -48269688 + AT_rich Low_complexity Low_complexity 1 38 0 1412 169 65 38 chr9 69593136 69593426 -48269201 - AluJo SINE Alu -14 298 1 2221 94 0 3 chr9 69593502 69593788 -48268839 + AluSg SINE Alu 2 286 -24 237 65 0 0 chr9 69593824 69593855 -48268772 + (T)n Simple_repeat Simple_repeat 1 31 0 2703 32 0 0 chr9 69593977 69594287 -48268340 + AluY SINE Alu 1 310 -1 1284 118 20 0 chr9 69595017 69595220 -48267407 + MER44D DNA MER2_type 1 477 -132 900 179 6 40 chr9 69595381 69595554 -48267073 - FAM SINE Alu -2 47 1 26 0 0 0 chr9 69595577 69595603 -48267024 + AT_rich Low_complexity Low_complexity 1 26 0 184 111 44 0 chr9 69596134 69596179 -48266448 + (TG)n Simple_repeat Simple_repeat 2 48 0 207 0 0 0 chr9 69596463 69596486 -48266141 + (T)n Simple_repeat Simple_repeat 1 23 0 1801 231 57 38 chr9 69596708 69596933 -48265694 + L1MD2 LINE L1 5428 5647 -712 2078 137 3 0 chr9 69596933 69597225 -48265402 - AluSq SINE Alu -18 295 3 1801 231 57 38 chr9 69597225 69597523 -48265104 + L1MD2 LINE L1 5647 5961 -398 1298 194 42 31 chr9 69597538 69597827 -48264800 - AluJo SINE Alu -20 292 1 2018 138 0 10 chr9 69597894 69598190 -48264437 - AluSx SINE Alu -11 301 9 1441 181 49 28 chr9 69598204 69598492 -48264135 - AluJo SINE Alu -18 294 1 1908 150 0 11 chr9 69598542 69598851 -48263776 - AluSx SINE Alu 0 306 1 1363 188 51 29 chr9 69598851 69599127 -48263500 - AluJo SINE Alu -4 308 27 2100 107 7 7 chr9 69601018 69601308 -48261319 + AluSx SINE Alu 16 305 -7 315 0 0 0 chr9 69601394 69601429 -48261198 + (CA)n Simple_repeat Simple_repeat 2 36 0 2662 179 4 24 chr9 69601433 69601898 -48260729 - MLT2B2 LTR ERVL -57 458 3 22 35 0 0 chr9 69602271 69602300 -48260327 + AT_rich Low_complexity Low_complexity 1 29 0 2407 148 18 16 chr9 69602555 69602940 -48259687 + MLT1B LTR MaLR 1 386 -4 432 271 34 8 chr9 69603080 69603198 -48259429 - MIR SINE MIR -72 190 70 439 308 129 49 chr9 69603297 69603684 -48258943 - L2 LINE L2 -3 3269 2852 326 232 246 21 chr9 69603813 69603955 -48258672 - MER5A DNA MER1_type -6 183 10 2112 107 0 44 chr9 69604924 69605241 -48257386 + AluSq SINE Alu 1 303 -10 315 223 58 0 chr9 69605792 69605895 -48256732 + Charlie7 DNA MER1_type 30 138 -2474 1646 141 130 0 chr9 69605895 69606165 -48256462 - AluSx SINE Alu -6 306 2 411 215 35 0 chr9 69606241 69606413 -48256214 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 258 156 0 0 chr9 69606418 69606463 -48256164 + T-rich Low_complexity Low_complexity 1 45 0 333 0 0 0 chr9 69606873 69606910 -48255717 + (CA)n Simple_repeat Simple_repeat 1 37 0 864 160 53 27 chr9 69607413 69607563 -48255064 + AluJb SINE Alu 1 154 -158 823 141 0 98 chr9 69607613 69607776 -48254851 + AluJb SINE Alu 145 291 -21 1734 149 14 14 chr9 69608728 69609017 -48253610 - AluJo SINE Alu -13 299 11 2149 130 7 3 chr9 69609053 69609361 -48253266 - AluSx SINE Alu -3 309 1 2007 155 7 0 chr9 69610283 69610593 -48252034 - AluJb SINE Alu 0 312 1 2307 108 0 0 chr9 69610670 69610967 -48251660 - AluSg1 SINE Alu -12 297 1 2183 116 3 0 chr9 69612393 69612687 -48249940 - AluSx SINE Alu -17 295 1 2374 109 0 0 chr9 69612845 69613157 -48249470 - AluSq SINE Alu -1 312 1 222 230 68 27 chr9 69613759 69613833 -48248794 + MIR SINE MIR 77 153 -109 1523 174 0 38 chr9 69614487 69614775 -48247852 - AluJo SINE Alu -35 277 1 622 269 67 93 chr9 69615173 69615263 -48247364 - L3 LINE CR1 -596 981 890 2516 57 0 0 chr9 69615263 69615560 -48247067 + AluY SINE Alu 1 297 -14 622 269 67 93 chr9 69615560 69615855 -48246772 - L3 LINE CR1 -687 890 606 25 65 0 0 chr9 69617042 69617088 -48245539 + AT_rich Low_complexity Low_complexity 1 46 0 194 369 39 39 chr9 69619020 69619123 -48243504 - L2 LINE L2 -2 3270 3168 2422 82 7 3 chr9 69619905 69620208 -48242419 + AluSc SINE Alu 1 304 -5 2541 55 0 26 chr9 69620646 69620956 -48241671 + AluSq SINE Alu 1 302 -11 2165 117 3 7 chr9 69621335 69621635 -48240992 - AluSx SINE Alu -13 299 1 698 100 0 0 chr9 69622288 69622378 -48240249 - AluSp/q SINE Alu -13 300 211 1940 80 3 160 chr9 69622293 69622643 -48239984 - AluSp SINE Alu -18 295 1 219 217 87 0 chr9 69623134 69623180 -48239447 - L2 LINE L2 0 3313 3264 467 235 70 0 chr9 69623451 69623566 -48239061 - MIR SINE MIR -66 142 20 2499 81 3 0 chr9 69623702 69624011 -48238616 - AluSp SINE Alu -3 310 1 254 240 154 0 chr9 69624312 69624416 -48238211 - MIR3 SINE MIR -54 154 35 195 139 0 0 chr9 69625882 69625918 -48236709 + (CA)n Simple_repeat Simple_repeat 2 37 0 26 0 0 0 chr9 69626052 69626078 -48236549 + AT_rich Low_complexity Low_complexity 1 26 0 298 217 72 24 chr9 69627679 69627762 -48234865 + MIR SINE MIR 80 166 -96 201 163 0 102 chr9 69627753 69627802 -48234825 + L2 LINE L2 3210 3253 -19 * 25 0 0 0 chr9 69628310 69628335 -48234292 + AT_rich Low_complexity Low_complexity 1 25 0 351 0 0 0 chr9 69628437 69628476 -48234151 + (CA)n Simple_repeat Simple_repeat 2 40 0 41 66 0 0 chr9 69631631 69631707 -48230920 + GC_rich Low_complexity Low_complexity 1 76 0 206 202 24 24 chr9 69631790 69631874 -48230753 + G-rich Low_complexity Low_complexity 3 86 0 25 65 0 0 chr9 69634105 69634151 -48228476 + AT_rich Low_complexity Low_complexity 1 46 0 338 256 75 111 chr9 69635796 69636156 -48226471 + L1M2 LINE L1 769 1115 -5734 684 186 9 0 chr9 69637627 69637740 -48224887 - FLAM_A SINE Alu -19 114 1 1743 146 3 24 chr9 69639580 69639910 -48222717 - AluJb SINE Alu 0 324 1 241 341 85 24 chr9 69641152 69641316 -48221311 + MIR3 SINE MIR 5 178 -30 433 256 122 61 chr9 69641794 69642040 -48220587 + MIR SINE MIR 2 262 0 237 152 65 0 chr9 69642248 69642294 -48220333 - L2 LINE L2 0 3272 3224 1713 151 4 0 chr9 69642625 69642884 -48219743 - AluJo SINE Alu -27 285 26 311 263 121 10 chr9 69643227 69643326 -48219301 + MIR SINE MIR 51 160 -102 282 267 117 17 chr9 69644924 69645044 -48217583 + L1M4 LINE L1 4030 4161 -1985 335 285 24 32 chr9 69645228 69645351 -48217276 + MIR SINE MIR 71 192 -70 288 220 101 23 chr9 69645513 69645676 -48216951 + MLT1J LTR MaLR 223 463 -48 188 247 13 78 chr9 69645708 69645785 -48216842 + MIR SINE MIR 189 260 -2 25 0 0 0 chr9 69645797 69645822 -48216805 + AT_rich Low_complexity Low_complexity 1 25 0 262 289 70 22 chr9 69645822 69646095 -48216532 + L1M4 LINE L1 4358 4643 -1503 547 214 0 0 chr9 69646098 69646196 -48216431 + AluJ/FLAM SINE Alu 2 99 -213 368 287 196 27 chr9 69646387 69646718 -48215909 + L1M4 LINE L1 4955 5341 -805 512 101 0 25 chr9 69646741 69646820 -48215807 + L1PB3 LINE L1 6078 6154 0 783 250 93 129 chr9 69647888 69648260 -48214367 - LTR67 LTR ERVL -5 552 206 2270 60 0 4 chr9 69648260 69648586 -48214041 + AluY SINE Alu 1 325 0 783 250 93 129 chr9 69648586 69648784 -48213843 - LTR67 LTR ERVL -351 206 2 2336 141 0 9 chr9 69648838 69649178 -48213449 - MER1B DNA MER1_type 0 337 1 507 115 11 23 chr9 69649189 69649276 -48213351 - L1MB8 LINE L1 0 6178 6093 13533 221 25 28 chr9 69649342 69654339 -48208288 - L1MA9 LINE L1 -30 7701 2719 6773 183 59 22 chr9 69654342 69655619 -48207008 - MER52A LTR ERV1 -10 1745 422 630 177 79 88 chr9 69655623 69655838 -48206789 - MER52A LTR ERV1 -1542 213 1 9209 239 21 18 chr9 69655838 69658442 -48204185 - L1M2c LINE L1 -4528 2640 3 1304 185 36 14 chr9 69658445 69658721 -48203906 - L1MB4 LINE L1 -40 6140 5859 327 146 0 0 chr9 69658722 69658777 -48203850 + (TCCC)n Simple_repeat Simple_repeat 3 57 0 2095 136 3 0 chr9 69658779 69659080 -48203547 - AluSp SINE Alu -11 302 1 3112 205 46 17 chr9 69659081 69660159 -48202468 - L1MB4 LINE L1 -312 5868 4755 1779 164 73 88 chr9 69660160 69660593 -48202034 - MSTB1 LTR MaLR -2 430 6 8468 235 27 10 chr9 69660593 69662818 -48199809 - L1MB4 LINE L1 -1386 4760 2497 215 341 62 52 chr9 69662837 69663315 -48199312 + L2 LINE L2 2577 3058 -214 185 222 93 37 chr9 69663397 69663451 -48199176 + L2 LINE L2 3184 3240 -32 1466 243 61 31 chr9 69663457 69663901 -48198726 + LTR40c LTR ERVL 4 460 -5 4153 113 1 63 chr9 69663941 69664455 -48198172 + MER4B LTR ERV1 1 468 -142 2494 67 0 38 chr9 69664455 69664771 -48197856 + AluSq SINE Alu 1 304 -9 4153 113 1 63 chr9 69664771 69664905 -48197722 + MER4B LTR ERV1 468 609 -1 2324 154 2 65 chr9 69664936 69665352 -48197275 - MLT1B LTR MaLR 0 390 1 2236 109 3 3 chr9 69665914 69666216 -48196411 + AluSx SINE Alu 1 302 -10 2114 114 0 0 chr9 69666512 69666819 -48195808 + AluSx SINE Alu 1 307 0 285 365 19 10 chr9 69666875 69666979 -48195648 - L2 LINE L2 0 3272 3168 1291 203 132 5 chr9 69667068 69667353 -48195274 - L1MC4a LINE L1 -502 7306 6962 231 36 0 0 chr9 69667353 69667381 -48195246 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 1291 203 132 5 chr9 69667381 69667465 -48195162 - L1MC4a LINE L1 -846 6962 6890 5966 241 87 39 chr9 69667606 69667725 -48194902 - L1ME1 LINE L1 -5 6161 6049 966 85 78 0 chr9 69667725 69667854 -48194773 - MER85 DNA T2_type 0 139 1 5966 241 87 39 chr9 69667854 69670600 -48192027 - L1ME1 LINE L1 -117 6049 3146 242 167 0 0 chr9 69670723 69670765 -48191862 + AluJo SINE Alu 38 79 -223 1955 189 83 91 chr9 69670766 69671430 -48191197 - MER61E LTR ERV1 0 779 2 1449 138 4 45 chr9 69671430 69671677 -48190950 + AluJo SINE Alu 76 312 0 240 286 143 0 chr9 69671682 69671815 -48190812 + L2 LINE L2 3161 3312 -1 15182 82 4 5 chr9 69672192 69674186 -48188441 - Harlequin LTR ERV1 -1 6895 4903 369 195 67 60 chr9 69674330 69674479 -48188148 - L1M4 LINE L1 -1095 5051 4902 2115 123 0 16 chr9 69674617 69674951 -48187676 + AluSx SINE Alu 1 312 0 22 56 0 0 chr9 69674965 69675001 -48187626 + AT_rich Low_complexity Low_complexity 1 36 0 776 213 42 42 chr9 69675611 69675851 -48186776 + MLT1E LTR MaLR 1 240 -353 773 166 34 18 chr9 69675897 69676084 -48186543 + MLT1E1 LTR MaLR 398 654 0 345 276 29 9 chr9 69676332 69676437 -48186190 + L2 LINE L2 3201 3307 -6 211 401 34 0 chr9 69676488 69676665 -48185962 - MIR SINE MIR -29 233 51 335 301 6 12 chr9 69676687 69676850 -48185777 + (TA)n Simple_repeat Simple_repeat 1 162 0 201 280 93 0 chr9 69677320 69677395 -48185232 - MIR SINE MIR -76 186 105 290 295 158 30 chr9 69678723 69678840 -48183787 - LTR16C LTR ERVL -49 442 341 2329 110 0 7 chr9 69678840 69679148 -48183479 - AluSx SINE Alu -6 306 1 290 295 158 30 chr9 69679148 69679264 -48183363 - LTR16C LTR ERVL -150 341 179 22 35 0 0 chr9 69679866 69679895 -48182732 + AT_rich Low_complexity Low_complexity 1 29 0 1002 225 34 75 chr9 69679996 69680378 -48182249 - MLT1C LTR MaLR 0 467 106 7008 230 60 49 chr9 69680732 69684543 -48178084 - L1MCb LINE L1 -1938 4488 538 217 51 51 0 chr9 69684543 69684582 -48178045 + (TG)n Simple_repeat Simple_repeat 1 41 0 7008 230 60 49 chr9 69684582 69684670 -48177957 - L1MCb LINE L1 -5888 538 452 3825 170 40 17 chr9 69684670 69685375 -48177252 + ERVL-D LTR ERVL 5037 5757 -7 1617 193 69 20 chr9 69685375 69685739 -48176888 + MLT2D LTR ERVL 1 480 -40 209 32 0 32 chr9 69685743 69685774 -48176853 + (TTATA)n Simple_repeat Simple_repeat 5 34 0 278 195 0 61 chr9 69685823 69685905 -48176722 + MER4-int LTR ERV1 1114 1190 -5408 552 284 0 6 chr9 69685943 69686112 -48176515 - L1M4 LINE L1 -1749 4397 4230 * 40018 72 10 13 chr9 69686103 69690087 -48172540 - L1PA5 LINE L1 0 6154 2194 1319 27 0 0 chr9 69690087 69690235 -48172392 - L1PA4 LINE L1 -3 6152 6005 40018 72 10 13 chr9 69690235 69692413 -48170214 - L1PA5 LINE L1 -3960 2194 11 2479 226 11 2 chr9 69692424 69692976 -48169651 - L1M4 LINE L1 -1897 4249 3693 971 211 58 27 chr9 69692968 69693229 -48169398 - L1MCb LINE L1 -6147 279 11 * 616 267 7 0 chr9 69693310 69693456 -48169171 - MER58A DNA MER1_type -46 178 32 292 284 130 24 chr9 69693497 69693666 -48168961 + MLT1L LTR MaLR 427 613 -2 198 301 38 53 chr9 69693720 69693853 -48168774 + L2 LINE L2 2153 2283 -1031 240 293 212 0 chr9 69694496 69694595 -48168032 + L2 LINE L2 3194 3313 0 738 318 97 14 chr9 69694614 69694862 -48167765 + L1MC/D LINE L1 3511 3737 -2409 2299 102 0 0 chr9 69694862 69695157 -48167470 + AluSx SINE Alu 1 295 -17 738 318 97 14 chr9 69695157 69695569 -48167058 + L1MC/D LINE L1 3737 4226 -1920 1409 209 178 51 chr9 69695571 69696111 -48166516 - MLT1E2 LTR MaLR -2 624 1 352 298 130 19 chr9 69696113 69696375 -48166252 + L1MC/D LINE L1 4239 4529 -1617 280 150 33 33 chr9 69696403 69696463 -48166164 - L1PA7 LINE L1 -1 6153 6094 * 13725 87 9 24 chr9 69696447 69698688 -48163939 - L1P3 LINE L1 -4223 2238 1 547 104 0 0 chr9 69698716 69698793 -48163834 - Alu SINE Alu -14 296 220 368 263 16 48 chr9 69698994 69699180 -48163447 + L1MC/D LINE L1 4879 5058 -1088 696 314 64 37 chr9 69700367 69700803 -48161824 + L1MC/D LINE L1 5282 5729 -2079 312 27 0 0 chr9 69701004 69701041 -48161586 + (ATG)n Simple_repeat Simple_repeat 2 38 0 2076 122 3 10 chr9 69701079 69701373 -48161254 - AluSq SINE Alu -21 292 1 276 233 165 45 chr9 69702671 69702804 -48159823 + MIR SINE MIR 4 152 -110 357 270 21 103 chr9 69703280 69703513 -48159114 - L2 LINE L2 -66 3247 3034 524 210 242 0 chr9 69703640 69703797 -48158830 - MER3 DNA MER1_type -12 197 3 702 253 80 75 chr9 69704408 69704532 -48158095 + L1MC4 LINE L1 7639 7761 -281 1644 154 66 7 chr9 69704532 69704804 -48157823 + AluJo SINE Alu 1 288 -24 702 253 80 75 chr9 69704804 69705078 -48157549 + L1MC4 LINE L1 7761 8039 -3 445 254 142 15 chr9 69705658 69705884 -48156743 - MLT1K LTR MaLR -3 611 359 234 200 129 35 chr9 69705931 69706016 -48156611 - MLT1K LTR MaLR -317 271 179 746 243 40 18 chr9 69706607 69706829 -48155798 - LTR16C LTR ERVL -12 479 253 325 304 128 7 chr9 69707502 69707650 -48154977 + MIR SINE MIR 37 202 -60 1943 194 69 55 chr9 69708808 69709148 -48153479 - L1MD3 LINE L1 -2 8039 7705 228 35 0 0 chr9 69709148 69709177 -48153450 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 2191 78 0 4 chr9 69709179 69709449 -48153178 - AluSx SINE Alu -31 281 13 1943 194 69 55 chr9 69709449 69709635 -48152992 - L1MD3 LINE L1 -336 7705 7518 1160 243 74 20 chr9 69709642 69709992 -48152635 + L1MC4 LINE L1 7143 7511 -531 244 282 0 26 chr9 69710698 69710776 -48151851 + MIR SINE MIR 42 117 -145 198 312 55 46 chr9 69710955 69711064 -48151563 - MIR SINE MIR -112 150 41 243 288 61 0 chr9 69711094 69711160 -48151467 - L2 LINE L2 -2 3311 3242 353 303 90 19 chr9 69711931 69712142 -48150485 - L2 LINE L2 -919 2395 2170 5341 135 22 21 chr9 69712375 69712607 -48150020 - L1MA4A LINE L1 0 6303 6073 3138 71 0 0 chr9 69712607 69712971 -48149656 - THE1B LTR MaLR 0 364 1 5341 135 22 21 chr9 69712971 69713647 -48148980 - L1MA4A LINE L1 -230 6073 5394 180 0 0 0 chr9 69714469 69714489 -48148138 + (A)n Simple_repeat Simple_repeat 1 20 0 221 216 274 0 chr9 69715406 69715508 -48147119 + MER5A DNA MER1_type 35 164 -25 * 336 256 33 0 chr9 69715441 69715531 -48147096 - MER5A DNA MER1_type -83 106 14 1445 42 0 0 chr9 69716174 69716342 -48146285 - AluYa5 SINE Alu 0 311 144 379 262 21 35 chr9 69717452 69717597 -48145030 - MARNA DNA Mariner -48 538 396 * 416 302 8 16 chr9 69717488 69717617 -48145010 + MARNA DNA Mariner 83 210 -376 718 272 49 31 chr9 69717966 69718190 -48144437 + L1MC4 LINE L1 5534 5761 -2047 * 1018 256 90 43 chr9 69718182 69718627 -48144000 + L1MC4 LINE L1 6854 7319 -723 4384 143 96 40 chr9 69718759 69719615 -48143012 - MER49 LTR ERV1 -19 904 1 536 297 176 27 chr9 69719615 69720097 -48142530 + L1MC4 LINE L1 7487 8040 -2 854 267 82 64 chr9 69721589 69722122 -48140505 - MLT1G1 LTR MaLR 0 595 20 1882 151 0 17 chr9 69723186 69723484 -48139143 - AluJo SINE Alu -7 305 13 275 202 8 101 chr9 69723843 69723918 -48138709 + L1MEc LINE L1 1648 1710 -4686 2663 37 0 0 chr9 69723918 69724218 -48138409 - AluY SINE Alu -11 300 1 275 202 8 101 chr9 69724218 69724261 -48138366 + L1MEc LINE L1 1710 1755 -4641 1288 203 5 93 chr9 69724274 69724693 -48137934 + L1M4 LINE L1 3593 3974 -2172 801 144 0 8 chr9 69725345 69725463 -48137164 + AluJb SINE Alu 2 118 -194 216 0 0 0 chr9 69725463 69725487 -48137140 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 765 253 53 27 chr9 69725500 69725725 -48136902 + HsTC2 DNA Tc2 1202 1608 -290 1159 130 6 0 chr9 69725741 69725903 -48136724 + AluJb SINE Alu 150 312 0 555 229 0 93 chr9 69726222 69726405 -48136222 + L1M4 LINE L1 3593 3758 -2388 515 233 240 0 chr9 69727604 69727754 -48134873 - MER5A DNA MER1_type 0 189 4 1628 166 27 33 chr9 69727964 69728265 -48134362 + AluJo SINE Alu 1 299 -13 371 303 53 15 chr9 69728306 69728438 -48134189 - L1MEc LINE L1 -2937 3278 3142 670 286 31 8 chr9 69728494 69728753 -48133874 - L1MEc LINE L1 -3207 3008 2744 1726 265 82 22 chr9 69728805 69729431 -48133196 + HsTC2a DNA Tc2 81 743 -1 347 287 168 41 chr9 69729438 69729807 -48132820 - L1MEc LINE L1 -3499 2716 2301 2163 99 14 3 chr9 69729878 69730171 -48132456 + AluSx SINE Alu 1 296 -16 259 314 38 16 chr9 69730219 69730404 -48132223 - L1MEc LINE L1 -4259 2137 1949 1303 89 95 0 chr9 69730408 69730587 -48132040 - L1PA10 LINE L1 -11 6157 5962 3449 75 0 2 chr9 69730587 69731027 -48131600 + L1PA10 LINE L1 5397 5835 -333 2394 279 80 13 chr9 69731062 69731937 -48130690 + HERV16 LTR ERVL 51 984 -4012 287 169 56 28 chr9 69731940 69732011 -48130616 + LTR16B LTR ERVL 392 464 0 365 227 76 23 chr9 69732013 69732145 -48130482 + LTR16A LTR ERVL 300 438 -12 1848 160 0 36 chr9 69733041 69733348 -48129279 - AluJb SINE Alu -16 296 1 843 217 122 20 chr9 69734574 69734920 -48127707 + MLT1D LTR MaLR 3 446 -59 2262 113 3 3 chr9 69734920 69735230 -48127397 - AluSx SINE Alu -2 310 1 843 217 122 20 chr9 69735230 69735297 -48127330 + MLT1D LTR MaLR 446 505 0 542 270 19 0 chr9 69735474 69735633 -48126994 + L1MD2 LINE L1 6194 6355 -4 228 231 0 0 chr9 69735981 69736033 -48126594 + LTR30 LTR ERV1 1 52 -670 2618 119 53 30 chr9 69736033 69736463 -48126164 + LTR12 LTR ERV1 53 492 -222 476 242 316 28 chr9 69736872 69737227 -48125400 - L2 LINE L2 -1 3312 2856 285 254 48 0 chr9 69737217 69737271 -48125356 - L2 LINE L2 -1734 1580 1524 353 247 0 24 chr9 69737271 69737356 -48125271 - MER5A DNA MER1_type 0 189 107 296 270 40 27 chr9 69737365 69737513 -48125114 + L1M4b LINE L1 31 180 -6679 522 289 34 88 chr9 69737766 69738119 -48124508 + L1M4b LINE L1 845 1178 -5677 794 158 0 27 chr9 69738185 69738368 -48124259 + GA-rich Low_complexity Low_complexity 2 179 0 769 232 73 40 chr9 69738405 69738685 -48123942 + L1M4b LINE L1 1214 1468 -4971 244 114 0 0 chr9 69738719 69738754 -48123873 + L1M4b LINE L1 1781 1815 -5040 308 306 45 19 chr9 69738841 69738998 -48123629 - L1M4 LINE L1 -5662 880 720 3206 250 88 25 chr9 69739026 69740912 -48121715 + L1M4b LINE L1 1983 3960 -2997 394 244 71 24 chr9 69740910 69741078 -48121549 + L1MB8 LINE L1 5904 6079 -99 * 1781 228 45 68 chr9 69741081 69741608 -48121019 - MLT2B1 LTR ERVL 0 520 6 388 229 12 12 chr9 69741608 69741691 -48120936 + L1M4b LINE L1 4892 4974 -1983 391 172 103 0 chr9 69741696 69741783 -48120844 + L1MB8 LINE L1 6078 6173 -5 539 237 108 44 chr9 69741791 69741910 -48120717 + L1M4 LINE L1 3196 3306 -2840 2125 205 82 34 chr9 69741910 69741954 -48120673 + MLT1D LTR MaLR 1 41 -464 2222 94 0 0 chr9 69741954 69742230 -48120397 + AluSx SINE Alu 22 297 -15 2125 205 82 34 chr9 69742230 69742663 -48119964 + MLT1D LTR MaLR 41 501 -4 539 237 108 44 chr9 69742663 69742792 -48119835 + L1M4 LINE L1 3306 3460 -2686 1413 140 47 197 chr9 69742823 69743230 -48119397 + MER39 LTR ERV1 1 497 -210 870 205 35 62 chr9 69743584 69743936 -48118691 + L1MB3 LINE L1 789 1481 -4822 * 6137 215 71 12 chr9 69743927 69745545 -48117082 + L1MB3 LINE L1 3881 5688 -731 788 225 0 0 chr9 69745545 69745674 -48116953 + FLAM_A SINE Alu 1 129 -4 6137 215 71 12 chr9 69745674 69746445 -48116182 + L1MB3 LINE L1 5688 6412 -7 660 296 136 0 chr9 69746461 69746741 -48115886 + L1M4 LINE L1 3495 3812 -2334 476 220 9 9 chr9 69746749 69746858 -48115769 + L1M4 LINE L1 4060 4168 -1978 2102 119 3 13 chr9 69746885 69747187 -48115440 + AluSx SINE Alu 1 299 -13 267 271 47 9 chr9 69747589 69747696 -48114931 + L1MC4 LINE L1 6799 6909 -1133 2054 188 72 26 chr9 69748010 69748268 -48114359 + Charlie1b DNA MER1_type 1 246 -2515 2090 96 26 51 chr9 69748268 69748580 -48114047 - AluSx SINE Alu -8 304 1 2054 188 72 26 chr9 69748580 69748821 -48113806 + Charlie1b DNA MER1_type 246 523 0 1555 187 9 51 chr9 69750214 69750529 -48112098 - AluJb SINE Alu -10 302 1 267 304 29 0 chr9 69750530 69750599 -48112028 + L2 LINE L2 3200 3270 -2 198 237 85 0 chr9 69751080 69751139 -48111488 + MIR SINE MIR 151 214 -48 3225 151 22 16 chr9 69751233 69751778 -48110849 - L1MC2 LINE L1 -11 6333 5786 213 207 69 0 chr9 69751999 69752057 -48110570 - L2 LINE L2 -38 3234 3173 904 288 13 0 chr9 69752120 69752356 -48110271 - MIR SINE MIR -22 240 2 327 258 129 0 chr9 69752851 69752975 -48109652 - MARNA DNA Mariner -375 211 72 231 36 0 0 chr9 69752975 69753003 -48109624 + (T)n Simple_repeat Simple_repeat 1 28 0 354 109 18 0 chr9 69753363 69753418 -48109209 - MLT2B1 LTR ERVL 0 520 465 255 190 35 0 chr9 69753418 69753476 -48109151 + (TATATG)n Simple_repeat Simple_repeat 2 61 0 277 305 55 0 chr9 69755351 69755479 -48107148 + L1ME4a LINE L1 5769 5903 -218 26 19 0 58 chr9 69755491 69755543 -48107084 + AT_rich Low_complexity Low_complexity 1 49 0 1815 240 74 15 chr9 69755606 69756153 -48106474 + MLT1E2 LTR MaLR 88 626 0 8350 208 42 47 chr9 69756555 69759631 -48102996 + L1PBa LINE L1 843 4030 -2832 428 19 38 0 chr9 69759631 69759684 -48102943 + L1PA7 LINE L1 6100 6154 0 8350 208 42 47 chr9 69759684 69760496 -48102131 + L1PBa LINE L1 4030 4845 -2017 2208 118 76 3 chr9 69760489 69760845 -48101782 + L1MA8 LINE L1 5857 6238 -53 * 323 312 83 26 chr9 69760905 69761171 -48101456 - L1M4 LINE L1 -3723 2423 2143 616 335 93 17 chr9 69761476 69761993 -48100634 + L2 LINE L2 2248 2803 -511 389 274 189 24 chr9 69762092 69762340 -48100287 + L2 LINE L2 2927 3215 -98 2173 96 14 0 chr9 69762419 69762733 -48099894 - AluSp SINE Alu 0 318 1 2096 113 3 30 chr9 69762956 69763257 -48099370 + AluSx SINE Alu 1 293 -19 239 325 41 6 chr9 69763283 69763452 -48099175 + L1M4 LINE L1 2432 2606 -3540 244 302 137 29 chr9 69763452 69763591 -48099036 - MER5A DNA MER1_type 0 189 36 304 310 30 0 chr9 69764405 69764505 -48098122 - L1MC4 LINE L1 -1 8041 7939 189 0 0 0 chr9 69764582 69764603 -48098024 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 963 106 8 0 chr9 69764603 69764735 -48097892 - AluSg/x SINE Alu -32 278 146 1599 154 0 0 chr9 69764751 69764984 -48097643 - AluSx SINE Alu -79 233 1 1471 237 139 15 chr9 69765084 69765565 -48097062 + L1MCb LINE L1 1 541 -5504 14767 152 33 30 chr9 69765716 69768268 -48094359 - ERVL-D LTR ERVL -743 5021 2461 4289 219 41 20 chr9 69768260 69769214 -48093413 - ERVL-D LTR ERVL -3991 1773 800 * 2288 242 109 10 chr9 69769230 69769853 -48092774 - ERVL-D LTR ERVL -5076 688 4 266 151 0 57 chr9 69769859 69769912 -48092715 - MLT2D LTR ERVL -7 513 464 2608 147 20 2 chr9 69769925 69770332 -48092295 + MSTB1 LTR MaLR 1 414 -18 1404 223 98 13 chr9 69770350 69770668 -48091959 - MER2 DNA MER2_type 0 345 1 329 43 21 0 chr9 69770681 69770728 -48091899 + (CA)n Simple_repeat Simple_repeat 1 48 0 1469 205 12 14 chr9 69770752 69771043 -48091584 - MLT2D LTR ERVL -69 345 51 2573 208 57 86 chr9 69771043 69771549 -48091078 - MER44D DNA MER2_type -1882 605 255 2071 93 47 0 chr9 69771549 69771827 -48090800 + AluSx SINE Alu 1 291 -21 2573 208 57 86 chr9 69771827 69772075 -48090552 - MER44D DNA MER2_type -2232 255 1 1469 205 12 14 chr9 69772075 69772119 -48090508 - MLT2D LTR ERVL -363 51 8 5192 185 41 55 chr9 69772133 69772378 -48090249 + L1MC2 LINE L1 4408 4655 -1689 2237 119 0 13 chr9 69772378 69772681 -48089946 + AluSx SINE Alu 1 299 -13 5192 185 41 55 chr9 69772681 69773401 -48089226 + L1MC2 LINE L1 4655 5384 -960 1814 156 7 17 chr9 69773401 69773703 -48088924 + AluSx SINE Alu 1 299 -13 5192 185 41 55 chr9 69773703 69774671 -48087956 + L1MC2 LINE L1 5384 6336 -8 815 340 91 3 chr9 69774767 69775120 -48087507 + LTR16C LTR ERVL 108 491 0 2119 141 7 0 chr9 69775193 69775548 -48087079 - AluSx SINE Alu 0 357 1 22 0 0 0 chr9 69775602 69775624 -48087003 + AT_rich Low_complexity Low_complexity 1 22 0 209 131 16 82 chr9 69775918 69775979 -48086648 + T-rich Low_complexity Low_complexity 3 59 0 5758 193 41 26 chr9 69776936 69779078 -48083549 - L1MB8 LINE L1 -1 6177 4009 1093 198 65 0 chr9 69779158 69779375 -48083252 + MER63B DNA MER1_type 3 233 -203 349 215 182 16 chr9 69779382 69779503 -48083124 - L1MB8 LINE L1 -2162 3984 3844 2178 125 0 7 chr9 69779642 69779946 -48082681 + AluSx SINE Alu 1 302 -10 1278 231 48 12 chr9 69780100 69780433 -48082194 - MER63B DNA MER1_type -89 347 3 1941 144 0 0 chr9 69780470 69780901 -48081726 + AluSx SINE Alu 5 435 0 21 36 0 0 chr9 69781664 69781692 -48080935 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr9 69781909 69781933 -48080694 + AT_rich Low_complexity Low_complexity 1 24 0 1447 181 100 4 chr9 69781941 69782222 -48080405 + AluJo SINE Alu 5 312 0 777 157 0 18 chr9 69782226 69782392 -48080235 + GA-rich Low_complexity Low_complexity 2 164 0 265 360 59 13 chr9 69782592 69782828 -48079799 + L1MEd LINE L1 317 563 -5556 323 291 89 24 chr9 69782971 69783184 -48079443 + L1M4 LINE L1 5106 5332 -814 279 302 23 12 chr9 69783337 69783423 -48079204 + MLT1L LTR MaLR 203 289 -326 480 235 0 0 chr9 69783569 69783684 -48078943 + L1M4 LINE L1 3812 3926 -2220 3886 184 68 48 chr9 69783742 69784122 -48078505 - MER21B LTR ERV1 0 863 492 1956 124 32 0 chr9 69784122 69784404 -48078223 + AluSq SINE Alu 1 291 -22 3886 184 68 48 chr9 69784404 69784859 -48077768 - MER21B LTR ERV1 -371 492 11 597 158 0 0 chr9 69784866 69784961 -48077666 - AluJ/FLAM SINE Alu -213 99 5 953 232 14 25 chr9 69784967 69785243 -48077384 - L1M4 LINE L1 -2266 3880 3608 833 264 62 39 chr9 69785434 69785534 -48077093 - L1M4 LINE L1 -2538 3608 3512 2459 100 0 0 chr9 69785534 69785845 -48076782 - AluSq SINE Alu -2 311 1 833 264 62 39 chr9 69785845 69786262 -48076365 - L1M4 LINE L1 -2634 3512 3079 1836 205 79 114 chr9 69786409 69787196 -48075431 - LTR1B LTR ERV1 -60 960 1 997 224 60 12 chr9 69787897 69788232 -48074395 - L1M4 LINE L1 -3058 3088 2738 563 198 20 0 chr9 69788250 69788351 -48074276 + MLT1D LTR MaLR 21 123 -382 956 225 4 54 chr9 69788363 69788603 -48074024 + MLT1D LTR MaLR 278 505 0 1758 229 44 30 chr9 69788604 69788649 -48073978 - L1M4 LINE L1 -3399 2747 2704 2010 142 17 62 chr9 69788649 69789002 -48073625 - MER1B DNA MER1_type 0 337 1 1758 229 44 30 chr9 69789002 69789481 -48073146 - L1M4 LINE L1 -3442 2704 2216 267 91 0 0 chr9 69789482 69789515 -48073112 - MER1B DNA MER1_type -77 262 230 1211 273 55 3 chr9 69789998 69790324 -48072303 - MLT1J LTR MaLR -168 343 1 218 376 32 18 chr9 69791324 69791545 -48071082 - L2 LINE L2 -107 3206 2983 187 295 80 40 chr9 69791766 69791966 -48070661 - L2 LINE L2 -556 2758 2551 2378 104 27 30 chr9 69792002 69792367 -48070260 + THE1B LTR MaLR 1 364 0 2078 131 3 19 chr9 69792421 69792733 -48069894 + AluJb SINE Alu 1 307 -5 183 114 0 0 chr9 69792994 69793029 -48069598 + (TG)n Simple_repeat Simple_repeat 2 36 0 282 349 0 0 chr9 69793041 69793104 -48069523 - Zaphod DNA AcHobo -3967 64 2 1496 195 108 21 chr9 69793196 69793608 -48069019 + MER31B LTR ERV1 1 648 -13 710 212 0 0 chr9 69793650 69793787 -48068840 - FLAM_A SINE Alu 0 142 6 2307 81 7 7 chr9 69793975 69794270 -48068357 - AluSp SINE Alu -17 296 2 1577 180 22 85 chr9 69794833 69795233 -48067394 + MLT1B LTR MaLR 16 390 0 1741 171 9 32 chr9 69795255 69795571 -48067056 - AluJo SINE Alu -3 309 1 582 213 9 8 chr9 69796281 69796483 -48066144 + MER57A LTR ERV1 135 403 0 519 91 40 6 chr9 69796654 69796748 -48065879 + MLT1B LTR MaLR 117 189 -201 1542 161 17 17 chr9 69797567 69797859 -48064768 + L1MC1 LINE L1 6042 6333 0 338 293 88 22 chr9 69797869 69798142 -48064485 - L1M4 LINE L1 -2995 3151 2861 485 124 34 11 chr9 69798310 69798399 -48064228 + FRAM SINE Alu 21 111 -65 450 329 9 4 chr9 69798512 69798743 -48063884 - L1M4 LINE L1 -3622 2524 2293 252 293 93 73 chr9 69798745 69798895 -48063732 + MIR3 SINE MIR 43 195 -13 2300 104 7 0 chr9 69800301 69800599 -48062028 - AluSc SINE Alu -9 300 1 448 187 55 0 chr9 69801242 69801333 -48061294 + MLT1E1 LTR MaLR 559 654 0 24 0 0 0 chr9 69801669 69801693 -48060934 + AT_rich Low_complexity Low_complexity 1 24 0 950 160 18 5 chr9 69801733 69802169 -48060458 + (TGGA)n Simple_repeat Simple_repeat 1 442 0 258 261 209 46 chr9 69803328 69803481 -48059146 - MIR SINE MIR -54 208 31 404 292 96 11 chr9 69803683 69803861 -48058766 + MIR SINE MIR 66 258 -4 1879 174 10 10 chr9 69804137 69804310 -48058317 - AluJo SINE Alu -1 311 139 522 0 0 0 chr9 69804310 69804368 -48058259 + (TTTA)n Simple_repeat Simple_repeat 2 59 0 2184 106 0 0 chr9 69804368 69804651 -48057976 - AluSx SINE Alu -29 283 1 1879 174 10 10 chr9 69804651 69804787 -48057840 - AluJo SINE Alu -171 141 1 214 314 93 73 chr9 69805607 69805811 -48056816 + MIR SINE MIR 55 262 0 207 204 0 0 chr9 69805812 69805856 -48056771 + (TTA)n Simple_repeat Simple_repeat 1 44 0 2273 108 0 0 chr9 69806550 69806837 -48055790 + AluSx SINE Alu 1 287 -25 232 102 41 0 chr9 69806837 69806886 -48055741 + (TA)n Simple_repeat Simple_repeat 2 52 0 35 0 0 0 chr9 69806997 69807032 -48055595 + AT_rich Low_complexity Low_complexity 1 35 0 390 203 34 17 chr9 69807257 69807434 -48055193 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 628 217 18 13 chr9 69807445 69807596 -48055031 - MLT2D LTR ERVL -19 445 240 1656 140 44 0 chr9 69809381 69809631 -48052996 - AluJb SINE Alu -9 303 43 251 283 48 28 chr9 69809662 69809807 -48052820 + MER5A DNA MER1_type 5 152 -37 335 200 0 12 chr9 69810266 69810346 -48052281 + CT-rich Low_complexity Low_complexity 2 80 0 1104 128 0 0 chr9 69810348 69810527 -48052100 + (TTCC)n Simple_repeat Simple_repeat 1 179 0 728 45 0 0 chr9 69810725 69810813 -48051814 + AluSg/x SINE Alu 181 268 -44 317 269 27 100 chr9 69810838 69811147 -48051480 + L1P5 LINE L1 5178 5462 -694 2453 205 16 31 chr9 69811186 69811698 -48050929 + MLT2B3 LTR ERVL 8 513 -41 537 16 0 0 chr9 69811698 69811760 -48050867 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 2453 205 16 31 chr9 69811760 69811802 -48050825 + MLT2B3 LTR ERVL 513 554 0 2326 99 0 13 chr9 69811860 69812173 -48050454 + AluSg SINE Alu 1 309 -1 6791 134 43 32 chr9 69812523 69812986 -48049641 - Tigger3b DNA MER2_type -1798 1230 773 2181 112 3 3 chr9 69812986 69813273 -48049354 + AluSx SINE Alu 1 287 -25 6791 134 43 32 chr9 69813273 69813739 -48048888 - Tigger3b DNA MER2_type -2255 773 282 2454 67 0 10 chr9 69813739 69814036 -48048591 + AluY SINE Alu 1 294 -17 6791 134 43 32 chr9 69814036 69814322 -48048305 - Tigger3b DNA MER2_type -2746 282 1 826 238 19 54 chr9 69814463 69814724 -48047903 - L1ME1 LINE L1 -6 6160 5909 2119 124 0 13 chr9 69815420 69815718 -48046909 - AluSx SINE Alu -18 294 1 1834 103 14 21 chr9 69815973 69816255 -48046372 + Tigger3b DNA MER2_type 247 526 -705 354 211 37 99 chr9 69816256 69816417 -48046210 - L1ME3A LINE L1 -290 5874 5724 233 298 77 29 chr9 69816421 69816525 -48046102 - L2 LINE L2 -2 3311 3203 2616 182 20 6 chr9 69816525 69817035 -48045592 - MER89 LTR ERV1 0 559 43 26 0 0 0 chr9 69817036 69817062 -48045565 + AT_rich Low_complexity Low_complexity 1 26 0 844 158 55 7 chr9 69817066 69817212 -48045415 - FAM SINE Alu -32 153 1 313 157 0 0 chr9 69817212 69817263 -48045364 - MER89 LTR ERV1 -500 59 9 1961 120 78 31 chr9 69817291 69817649 -48044978 + THE1C LTR MaLR 1 375 0 180 0 0 0 chr9 69817726 69817746 -48044881 + (A)n Simple_repeat Simple_repeat 1 20 0 270 276 60 9 chr9 69817816 69817932 -48044695 - L2 LINE L2 -249 3064 2943 322 305 43 24 chr9 69817983 69818156 -48044471 - L1ME3A LINE L1 -512 5658 5483 2278 116 3 0 chr9 69818378 69818689 -48043938 + AluSx SINE Alu 1 312 0 505 230 24 6 chr9 69818868 69818978 -48043649 + MLT1B LTR MaLR 281 389 -1 666 309 195 8 chr9 69819094 69819586 -48043041 + L2 LINE L2 1750 2333 -981 377 256 97 0 chr9 69820166 69820314 -48042313 - MLT1G1 LTR MaLR 0 595 390 413 101 72 0 chr9 69820463 69820532 -48042095 - L1PA11 LINE L1 0 6174 6101 3387 120 23 0 chr9 69820571 69821045 -48041582 + MER1A DNA MER1_type 45 529 0 461 248 122 42 chr9 69821073 69821287 -48041340 - L1ME2 LINE L1 -47 6117 5887 807 29 34 58 chr9 69821304 69821790 -48040837 + (TG)n Simple_repeat Simple_repeat 1 474 0 982 198 110 0 chr9 69822078 69822305 -48040322 - L1ME2 LINE L1 -343 5823 5572 2329 87 7 3 chr9 69822989 69823298 -48039329 - AluSg SINE Alu 0 310 1 21 71 0 0 chr9 69823375 69823417 -48039210 + AT_rich Low_complexity Low_complexity 1 42 0 1030 177 41 79 chr9 69824354 69824715 -48037912 + MER39 LTR ERV1 34 492 -215 241 210 210 0 chr9 69824803 69824903 -48037724 + L1M4 LINE L1 3360 3480 -2666 3720 155 56 136 chr9 69824916 69825128 -48037499 + MER21A LTR ERV1 1 228 -703 1732 36 0 0 chr9 69825128 69825324 -48037303 - AluY SINE Alu -11 300 105 3720 155 56 136 chr9 69825324 69826113 -48036514 + MER21A LTR ERV1 228 922 -9 2250 102 3 0 chr9 69826145 69826440 -48036187 + AluSx SINE Alu 1 296 -16 185 275 0 0 chr9 69826596 69826636 -48035991 - MIR SINE MIR -86 122 83 3474 150 44 55 chr9 69827017 69827515 -48035112 - L1MA9 LINE L1 0 6312 5810 1823 171 3 7 chr9 69827515 69827814 -48034813 - AluJb SINE Alu -10 302 5 3474 150 44 55 chr9 69827814 69827827 -48034800 - L1MA9 LINE L1 -502 5810 5798 2541 74 0 0 chr9 69827827 69828136 -48034491 - AluY SINE Alu -2 309 1 3474 150 44 55 chr9 69828136 69828328 -48034299 - L1MA9 LINE L1 -514 5798 5616 7275 169 54 16 chr9 69828428 69829843 -48032784 - L1MA9 LINE L1 -886 5260 3784 2191 125 0 0 chr9 69829843 69830140 -48032487 - AluSg1 SINE Alu -12 297 1 7275 169 54 16 chr9 69830140 69830194 -48032433 - L1MA9 LINE L1 -2362 3784 3734 939 162 0 0 chr9 69830415 69830652 -48031975 + CT-rich Low_complexity Low_complexity 1 237 0 998 142 0 0 chr9 69830957 69831105 -48031522 - AluSx SINE Alu -1 311 164 1102 146 0 0 chr9 69831198 69831356 -48031271 - AluSx SINE Alu -154 158 1 337 303 99 6 chr9 69831356 69831518 -48031109 - L1MC4a LINE L1 -340 5824 5709 1694 167 89 40 chr9 69831518 69831792 -48030835 + MER7A DNA MER2_type 1 293 -2745 2188 90 28 0 chr9 69831792 69832080 -48030547 + AluSc SINE Alu 1 296 -13 1694 167 89 40 chr9 69832080 69832129 -48030498 + MER7A DNA MER2_type 293 338 -8 340 284 122 31 chr9 69832302 69832540 -48030087 - L1MC4a LINE L1 -639 5527 5257 454 285 90 86 chr9 69832583 69832907 -48029720 - L1MC4a LINE L1 -1907 4239 3918 2007 143 6 13 chr9 69832907 69833221 -48029406 - AluSx SINE Alu 0 312 1 454 285 90 86 chr9 69833221 69833582 -48029045 - L1MC4a LINE L1 -2228 3918 3560 2465 67 0 0 chr9 69833582 69833880 -48028747 + AluY SINE Alu 1 298 -13 454 285 90 86 chr9 69833880 69834513 -48028114 - L1MC4a LINE L1 -2586 3560 2915 2522 101 17 9 chr9 69834525 69834873 -48027754 - L1PA11 LINE L1 -4 6170 5820 382 181 0 48 chr9 69834984 69835067 -48027560 - MER58B DNA MER1_type -5 336 258 536 308 43 9 chr9 69835947 69836158 -48026469 + MIR SINE MIR 24 241 -21 1161 164 0 33 chr9 69836168 69836382 -48026245 - L1MC1 LINE L1 0 6333 6127 1561 192 69 23 chr9 69836517 69836866 -48025761 + MLT1A1 LTR MaLR 1 365 0 224 326 12 23 chr9 69836872 69836958 -48025669 + MIR3 SINE MIR 7 91 -117 201 39 0 0 chr9 69837039 69837065 -48025562 + (TTA)n Simple_repeat Simple_repeat 2 27 0 2126 65 3 65 chr9 69837071 69837363 -48025264 - AluY SINE Alu -37 274 1 2498 72 0 7 chr9 69837896 69838203 -48024424 + AluY SINE Alu 1 305 -6 344 231 50 50 chr9 69838564 69838581 -48024046 - MIR SINE MIR -94 168 152 2236 100 0 0 chr9 69838581 69838892 -48023735 - AluSg SINE Alu 0 311 1 344 231 50 50 chr9 69838892 69838994 -48023633 - MIR SINE MIR -109 153 48 499 249 39 39 chr9 69839081 69839262 -48023365 - MER3 DNA MER1_type -22 187 7 628 169 7 7 chr9 69840204 69840340 -48022287 + CT-rich Low_complexity Low_complexity 4 139 0 1897 177 6 3 chr9 69840357 69840386 -48022241 - AluJb SINE Alu 0 312 285 402 21 0 0 chr9 69840386 69840433 -48022194 + (CTTG)n Simple_repeat Simple_repeat 2 48 0 1897 177 6 3 chr9 69840433 69840714 -48021913 - AluJb SINE Alu -27 285 1 5804 149 46 18 chr9 69840717 69841738 -48020889 - L1MC1 LINE L1 -11 6322 5273 210 71 0 0 chr9 69841738 69841766 -48020861 + (TG)n Simple_repeat Simple_repeat 1 28 0 21 0 0 0 chr9 69841777 69841798 -48020829 + AT_rich Low_complexity Low_complexity 1 21 0 366 23 0 0 chr9 69841809 69841852 -48020775 + (TA)n Simple_repeat Simple_repeat 1 43 0 911 148 28 0 chr9 69841879 69842021 -48020606 - L1PA16 LINE L1 0 6166 6021 1408 235 67 113 chr9 69842183 69842941 -48019686 - MER21B LTR ERV1 -124 739 17 359 261 160 38 chr9 69844661 69844899 -48017728 - L2 LINE L2 -1 3312 3046 414 268 45 56 chr9 69845085 69845264 -48017363 - L2 LINE L2 -461 2853 2677 936 287 84 59 chr9 69845563 69845851 -48016776 + L1MEd LINE L1 565 844 -1646 2300 99 0 0 chr9 69845851 69846144 -48016483 + AluSx SINE Alu 1 293 -19 936 287 84 59 chr9 69846144 69846812 -48015815 + L1MEd LINE L1 844 1625 -865 224 59 29 0 chr9 69847115 69847149 -48015478 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 2018 95 0 0 chr9 69847165 69847418 -48015209 - AluSx SINE Alu -59 253 1 652 279 60 12 chr9 69847787 69848120 -48014507 + L1MEd LINE L1 2206 2554 -3575 1802 157 14 3 chr9 69848215 69848501 -48014126 + AluJb SINE Alu 1 289 -23 399 272 0 0 chr9 69848527 69848663 -48013964 + (TA)n Simple_repeat Simple_repeat 1 136 0 499 244 18 78 chr9 69848765 69848982 -48013645 - MER112 DNA MER1_type -55 205 2 260 232 40 40 chr9 69849091 69849190 -48013437 + L1ME LINE L1 5794 5892 -278 329 192 13 13 chr9 69849365 69849443 -48013184 + MER116 DNA Mariner 3 80 0 24 0 0 0 chr9 69849921 69849945 -48012682 + AT_rich Low_complexity Low_complexity 1 24 0 11056 52 7 3 chr9 69851226 69853300 -48009327 + L1PA5 LINE L1 4077 6154 0 201 147 0 0 chr9 69853325 69853359 -48009268 + (A)n Simple_repeat Simple_repeat 1 34 0 2135 139 0 0 chr9 69853435 69853736 -48008891 - AluSx SINE Alu -11 301 1 183 146 0 0 chr9 69853781 69853822 -48008805 + (A)n Simple_repeat Simple_repeat 1 41 0 3315 235 113 22 chr9 69853865 69853945 -48008682 + L1MC4 LINE L1 6738 6809 -1233 2298 101 3 0 chr9 69853945 69854243 -48008384 + AluSx SINE Alu 1 299 -13 3315 235 113 22 chr9 69854243 69855230 -48007397 + L1MC4 LINE L1 6809 7902 -140 359 290 55 35 chr9 69855529 69855674 -48006953 - MIR SINE MIR -87 175 28 222 333 0 0 chr9 69856359 69856422 -48006205 + L2 LINE L2 3210 3272 0 21 36 0 0 chr9 69856586 69856614 -48006013 + AT_rich Low_complexity Low_complexity 1 28 0 7197 85 21 27 chr9 69856762 69857637 -48004990 - L1MA1 LINE L1 -4 6298 5429 2220 125 0 0 chr9 69857637 69857948 -48004679 - AluSx SINE Alu -1 311 1 7197 85 21 27 chr9 69857948 69858140 -48004487 - L1MA1 LINE L1 -873 5429 5237 21 36 0 0 chr9 69858157 69858185 -48004442 + AT_rich Low_complexity Low_complexity 1 28 0 2739 163 74 33 chr9 69858484 69858820 -48003807 - MER68 LTR ERV1 0 562 194 2010 144 3 0 chr9 69858820 69859111 -48003516 + AluSx SINE Alu 1 292 -20 2739 163 74 33 chr9 69859111 69859313 -48003314 - MER68 LTR ERV1 -368 194 2 294 221 0 26 chr9 69859523 69859600 -48003027 + L1MEc LINE L1 42 116 -6280 1208 163 106 0 chr9 69859600 69859827 -48002800 + Tigger1 DNA MER2_type 1 251 -2167 527 295 116 29 chr9 69859827 69860275 -48002352 + L1MEc LINE L1 1229 1715 -4681 * 1125 198 23 64 chr9 69860270 69860614 -48002013 + L1M4 LINE L1 3829 4158 -1988 2220 131 0 6 chr9 69860626 69861118 -48001509 + AluSg SINE Alu 1 310 0 4058 187 65 37 chr9 69861160 69861905 -48000722 - L1MB8 LINE L1 -1 6177 5382 207 0 0 0 chr9 69861905 69861928 -48000699 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 4058 187 65 37 chr9 69861928 69862347 -48000280 - L1MB8 LINE L1 -796 5382 4977 1401 209 65 6 chr9 69862348 69862441 -48000186 - L1MB8 LINE L1 -1361 4785 4699 225 94 0 0 chr9 69862441 69862473 -48000154 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 1401 209 65 6 chr9 69862473 69862704 -47999923 - L1MB8 LINE L1 -1447 4699 4442 1247 205 8 121 chr9 69862713 69862818 -47999809 + MLT1A2 LTR MaLR 4 119 -255 2295 89 10 0 chr9 69862818 69863110 -47999517 + AluSg SINE Alu 1 295 -15 1247 205 8 121 chr9 69863110 69863385 -47999242 + MLT1A2 LTR MaLR 119 341 -33 7990 221 61 5 chr9 69863437 69865524 -47997103 - L1MB8 LINE L1 -1712 4434 2231 406 118 0 0 chr9 69865524 69865602 -47997025 + AluS SINE Alu 229 306 0 594 279 58 46 chr9 69865603 69866083 -47996544 - L1M4b LINE L1 -4044 3094 2609 9677 35 3 5 chr9 69866089 69867162 -47995465 + MER11C LTR ERVK 1 1071 0 226 198 330 0 chr9 69867357 69867448 -47995179 - FLAM_C SINE Alu -5 128 8 4316 268 68 16 chr9 69867455 69869381 -47993246 - L1M4b LINE L1 -4543 2416 394 240 172 230 23 chr9 69869412 69869499 -47993128 + L1MA10 LINE L1 6176 6280 -54 200 322 17 0 chr9 69869699 69869758 -47992869 + L2 LINE L2 3210 3269 -3 402 250 69 7 chr9 69870247 69870391 -47992236 - MIR SINE MIR -36 226 74 2042 135 16 10 chr9 69870661 69870965 -47991662 + AluSx SINE Alu 2 307 -5 698 213 41 9 chr9 69871519 69871691 -47990936 + L1ME2 LINE L1 5996 6334 0 482 181 36 14 chr9 69871692 69871830 -47990797 + GA-rich Low_complexity Low_complexity 2 142 0 444 312 51 17 chr9 69871888 69872122 -47990505 + ERVL LTR ERVL 4881 5122 -642 1128 80 11 6 chr9 69873520 69873695 -47988932 + (GAA)n Simple_repeat Simple_repeat 3 178 0 659 133 0 8 chr9 69873695 69873815 -47988812 + (GGA)n Simple_repeat Simple_repeat 2 120 0 392 240 67 0 chr9 69874671 69874775 -47987852 + LTR50 LTR ERVL 1 111 -684 420 37 0 0 chr9 69874927 69874981 -47987646 + (CA)n Simple_repeat Simple_repeat 2 55 0 852 211 48 5 chr9 69875047 69875256 -47987371 + LTR50 LTR ERVL 489 706 -89 1053 313 147 15 chr9 69875729 69876193 -47986434 - MLT1H1 LTR MaLR -30 525 1 1745 149 59 31 chr9 69876405 69876596 -47986031 + MLT1B LTR MaLR 1 206 -184 1054 188 86 137 chr9 69876596 69876990 -47985637 - MLT1A2 LTR MaLR 0 374 1 1745 149 59 31 chr9 69876990 69877121 -47985506 + MLT1B LTR MaLR 206 332 -58 2249 273 34 7 chr9 69877217 69877833 -47984794 + L1MC4 LINE L1 6457 7089 -953 2549 208 53 33 chr9 69877844 69878487 -47984140 + L1MC4 LINE L1 7259 7914 -128 1017 228 82 4 chr9 69878586 69878854 -47983773 - LTR50 LTR ERVL -1 794 506 701 250 132 19 chr9 69878908 69879370 -47983257 - MLT1G LTR MaLR -5 585 5 216 150 51 0 chr9 69880081 69880136 -47982491 - MIR SINE MIR -87 121 64 431 227 176 0 chr9 69880866 69880985 -47981642 - MER5A DNA MER1_type -43 146 7 246 227 0 0 chr9 69881634 69881709 -47980918 + (TG)n Simple_repeat Simple_repeat 1 75 0 189 0 0 0 chr9 69883640 69883661 -47978966 + (T)n Simple_repeat Simple_repeat 1 21 0 552 272 24 18 chr9 69884124 69884293 -47978334 - MIR SINE MIR -60 202 33 855 312 36 27 chr9 69884626 69885039 -47977588 + L1MDa LINE L1 2 418 -6122 2173 103 7 10 chr9 69885493 69885803 -47976824 - AluSc SINE Alu 0 309 1 2380 207 49 36 chr9 69885943 69886208 -47976419 + L1MDa LINE L1 932 1192 -5348 2131 67 44 0 chr9 69886208 69886529 -47976098 - AluY SINE Alu 0 333 1 2380 207 49 36 chr9 69886529 69887133 -47975494 + L1MDa LINE L1 1192 1802 -4738 * 5103 207 8 14 chr9 69887130 69887491 -47975136 + L1MA9 LINE L1 3596 3958 -2188 2329 92 3 0 chr9 69887491 69887786 -47974841 + AluSg SINE Alu 1 296 -14 5103 207 8 14 chr9 69887786 69888502 -47974125 + L1MA9 LINE L1 3958 4667 -1479 4022 160 33 4 chr9 69888502 69889218 -47973409 + L1MA9 LINE L1 5559 6299 -13 958 209 99 83 chr9 69889230 69889571 -47973056 + L1MDa LINE L1 1703 2058 -4482 2250 117 7 0 chr9 69889571 69889880 -47972747 + AluSp SINE Alu 3 313 0 958 209 99 83 chr9 69889880 69890106 -47972521 + L1MDa LINE L1 2058 2279 -4261 3057 251 45 2 chr9 69890126 69891010 -47971617 + L1MDa LINE L1 2658 3579 -2961 921 193 41 67 chr9 69890995 69891199 -47971428 + L1MDa LINE L1 4297 4505 -2035 * 3246 75 57 9 chr9 69891199 69891574 -47971053 + MLT2A1 LTR ERVL 1 357 -87 195 42 0 0 chr9 69891574 69891598 -47971029 + (TC)n Simple_repeat Simple_repeat 2 25 0 423 0 0 0 chr9 69891598 69891645 -47970982 + (CA)n Simple_repeat Simple_repeat 2 48 0 3246 75 57 9 chr9 69891645 69891692 -47970935 + MLT2A1 LTR ERVL 356 444 0 921 193 41 67 chr9 69891692 69891756 -47970871 + L1MDa LINE L1 4505 4558 -1982 1974 131 24 20 chr9 69891756 69892054 -47970573 + AluSq SINE Alu 1 299 -14 367 102 0 0 chr9 69892056 69892105 -47970522 + MSTA LTR MaLR 380 428 0 2137 191 11 3 chr9 69892107 69892489 -47970138 - MER77 LTR ERV1 -218 387 3 667 173 100 57 chr9 69892547 69892764 -47969863 + L1MD3 LINE L1 7557 7995 0 2059 117 13 17 chr9 69893078 69893377 -47969250 + AluSx SINE Alu 1 298 -14 494 326 88 40 chr9 69893379 69893778 -47968849 - L2 LINE L2 -355 2959 2542 2370 97 0 0 chr9 69894686 69895031 -47967596 - AluY SINE Alu 0 345 1 2050 118 3 7 chr9 69896788 69897076 -47965551 + AluSq SINE Alu 1 287 -26 26 82 0 0 chr9 69898718 69898779 -47963848 + AT_rich Low_complexity Low_complexity 1 61 0 1119 193 68 0 chr9 69898831 69899038 -47963589 - MER58A DNA MER1_type -3 221 1 25 31 0 0 chr9 69899038 69899070 -47963557 + AT_rich Low_complexity Low_complexity 1 32 0 384 22 0 0 chr9 69899765 69899810 -47962817 + (TG)n Simple_repeat Simple_repeat 2 46 0 798 164 0 0 chr9 69899914 69900042 -47962585 + L1PB3 LINE L1 6025 6152 -2 24 0 0 0 chr9 69900060 69900084 -47962543 + AT_rich Low_complexity Low_complexity 1 24 0 288 324 187 32 chr9 69900105 69900389 -47962238 + L3 LINE CR1 708 1035 -542 267 312 79 63 chr9 69900710 69900963 -47961664 + L3 LINE CR1 1037 1293 -284 203 256 186 12 chr9 69901118 69901204 -47961423 + MIR3 SINE MIR 5 105 -103 207 316 22 65 chr9 69901731 69901870 -47960757 + MIR SINE MIR 89 221 -41 180 283 120 22 chr9 69902003 69902095 -47960532 - MIR SINE MIR -142 120 20 2520 77 0 6 chr9 69902820 69903133 -47959494 - AluY SINE Alu 0 311 1 2110 110 0 10 chr9 69903684 69903975 -47958652 - AluSq SINE Alu -17 296 9 2243 99 0 7 chr9 69904043 69904335 -47958292 - AluSg1 SINE Alu -19 290 1 279 0 0 0 chr9 69904512 69904543 -47958084 + (TG)n Simple_repeat Simple_repeat 2 32 0 509 289 131 29 chr9 69904675 69905208 -47957419 - L1ME LINE L1 -328 5842 5264 2900 180 118 119 chr9 69905697 69906513 -47956114 - L1MD2 LINE L1 -29 6724 5915 2371 88 3 0 chr9 69906513 69906810 -47955817 + AluSg SINE Alu 6 303 -7 2900 180 118 119 chr9 69906810 69907213 -47955414 - L1MD2 LINE L1 -838 5915 5513 189 0 0 0 chr9 69907219 69907240 -47955387 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 6865 70 20 0 chr9 69907242 69908211 -47954416 - L1PA8 LINE L1 -23 6464 5478 17623 123 7 14 chr9 69908211 69911030 -47951597 - L1PA8 LINE L1 -2073 4388 1591 7323 240 47 22 chr9 69911036 69911184 -47951443 - L1MD2 LINE L1 -1032 5508 5365 530 29 0 14 chr9 69911184 69911253 -47951374 + (CTATT)n Simple_repeat Simple_repeat 5 72 0 7323 240 47 22 chr9 69911253 69912481 -47950146 - L1MD2 LINE L1 -1175 5365 4169 189 0 0 0 chr9 69912481 69912502 -47950125 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 7323 240 47 22 chr9 69912502 69913138 -47949489 - L1MD2 LINE L1 -2371 4169 3433 2310 108 0 0 chr9 69913138 69913444 -47949183 - AluSg SINE Alu -4 306 1 7323 240 47 22 chr9 69913444 69913639 -47948988 - L1MD2 LINE L1 -3107 3433 3244 2318 256 118 8 chr9 69913701 69914326 -47948301 - L1MD2 LINE L1 -5831 709 16 2089 174 13 26 chr9 69915843 69916228 -47946399 + MLT1B LTR MaLR 1 380 -10 226 274 85 28 chr9 69916993 69917099 -47945528 + L2 LINE L2 3165 3276 -37 2407 84 3 10 chr9 69917403 69917712 -47944915 - AluSc SINE Alu -2 307 1 203 345 76 8 chr9 69918089 69918208 -47944419 - MIR SINE MIR -131 131 5 245 279 58 10 chr9 69918403 69918507 -47944120 - L3 LINE CR1 -726 851 743 649 171 8 8 chr9 69919407 69919524 -47943103 - MSTD LTR MaLR -279 117 1 200 230 11 92 chr9 69919595 69919682 -47942945 + MIR SINE MIR 35 114 -94 762 230 152 61 chr9 69919750 69920087 -47942540 + L2 LINE L2 2456 2836 -478 2168 121 0 10 chr9 69920087 69920393 -47942234 - AluSg SINE Alu -7 303 1 762 230 152 61 chr9 69920393 69920451 -47942176 + L2 LINE L2 2836 2887 -427 432 93 40 13 chr9 70120532 70120607 -47742020 - Alu SINE Alu -232 78 2 795 211 142 41 chr9 70120612 70120803 -47741824 - MLT1E2 LTR MaLR -163 463 293 2214 134 0 0 chr9 70120803 70121109 -47741518 + AluSx SINE Alu 1 306 -6 795 211 142 41 chr9 70121109 70121234 -47741393 - MLT1E2 LTR MaLR -333 293 115 230 184 41 0 chr9 70121309 70121358 -47741269 - MLT1E2 LTR MaLR -596 58 8 610 266 33 11 chr9 70121374 70121558 -47741069 + MIR SINE MIR 40 227 -35 272 139 0 0 chr9 70121603 70121646 -47740981 + (T)n Simple_repeat Simple_repeat 1 43 0 2234 168 24 0 chr9 70121849 70122229 -47740398 - MLT1B LTR MaLR -1 389 1 189 139 0 0 chr9 70122774 70122817 -47739810 + (CA)n Simple_repeat Simple_repeat 1 43 0 250 191 43 0 chr9 70124297 70124344 -47738283 + C-rich Low_complexity Low_complexity 5 53 0 2056 149 190 48 chr9 70124490 70124974 -47737653 + MLT2B3 LTR ERVL 2 554 0 1950 114 0 8 chr9 70125551 70125839 -47736788 - AluSx SINE Alu 0 305 20 1114 219 112 6 chr9 70127521 70127887 -47734740 + L1MB2 LINE L1 5760 6164 -7 187 295 141 0 chr9 70128381 70128459 -47734168 + MIR SINE MIR 71 159 -103 388 246 144 0 chr9 70129416 70129534 -47733093 + MIR SINE MIR 84 218 -44 209 314 14 0 chr9 70129699 70129769 -47732858 + CT-rich Low_complexity Low_complexity 4 74 0 292 71 57 14 chr9 70132094 70132164 -47730463 + (CA)n Simple_repeat Simple_repeat 1 73 0 617 205 25 17 chr9 70132224 70132589 -47730038 + (CA)n Simple_repeat Simple_repeat 1 368 0 2055 42 132 0 chr9 70133450 70133715 -47728912 - AluY SINE Alu -1 300 1 188 241 54 116 chr9 70133919 70134031 -47728596 - L2 LINE L2 -41 3272 3168 188 346 31 39 chr9 70134066 70134193 -47728434 - L2 LINE L2 -176 3096 2971 326 249 145 34 chr9 70135324 70135682 -47726945 - HAL1 LINE L1 -879 1628 1231 909 179 31 5 chr9 70135932 70136128 -47726499 + MLT1B LTR MaLR 188 388 -2 935 222 102 9 chr9 70136141 70136357 -47726270 + MER46A DNA MER2_type 1 236 0 1161 181 0 14 chr9 70136600 70136810 -47725817 - MER3 DNA MER1_type -2 207 1 1291 138 108 0 chr9 70138122 70138353 -47724274 + L1MC1 LINE L1 6074 6329 -4 2238 97 7 3 chr9 70138353 70138651 -47723976 + AluSx SINE Alu 1 299 -13 21 36 0 0 chr9 70141073 70141101 -47721526 + AT_rich Low_complexity Low_complexity 1 28 0 1498 73 0 0 chr9 70141101 70141280 -47721347 + AluY SINE Alu 115 293 -18 888 211 48 45 chr9 70143455 70143744 -47718883 + MER74A LTR ERVL 1 290 -268 1392 101 68 18 chr9 70143974 70144193 -47718434 + MER30 DNA MER1_type 1 230 0 1009 198 0 0 chr9 70146063 70146240 -47716387 + AluJb SINE Alu 136 312 0 254 280 115 62 chr9 70147983 70148383 -47714244 + L2 LINE L2 2368 2788 -526 326 353 130 0 chr9 70148676 70148860 -47713767 + L1MC/D LINE L1 5586 5793 -2015 742 98 32 49 chr9 70149270 70149393 -47713234 - AluSg/x SINE Alu -3 309 189 22 35 0 0 chr9 70149505 70149534 -47713093 + AT_rich Low_complexity Low_complexity 1 29 0 2097 132 14 0 chr9 70149534 70149829 -47712798 + AluSx SINE Alu 1 299 -13 1920 162 30 0 chr9 70150853 70151149 -47711478 + AluJb SINE Alu 1 305 -7 393 246 131 11 chr9 70151945 70152128 -47710499 + MER20 DNA MER1_type 1 205 -14 203 325 79 18 chr9 70152296 70152410 -47710217 + MIR SINE MIR 29 149 -113 2403 103 0 3 chr9 70152802 70153114 -47709513 + AluSx SINE Alu 1 311 -1 895 198 105 43 chr9 70153889 70154069 -47708558 + MER34 LTR ERV1 269 471 -71 2233 107 3 0 chr9 70154069 70154369 -47708258 - AluSc SINE Alu -8 301 1 895 198 105 43 chr9 70154369 70154446 -47708181 + MER34 LTR ERV1 471 542 0 2510 71 0 10 chr9 70154806 70155114 -47707513 - AluY SINE Alu -6 305 1 1291 194 40 11 chr9 70155584 70155862 -47706765 + L1MB3 LINE L1 5294 5579 -601 502 144 30 19 chr9 70155871 70155988 -47706639 + L1MB3 LINE L1 5718 5836 -332 255 250 181 79 chr9 70156514 70156730 -47705897 + MIR SINE MIR 22 259 -3 1777 165 61 3 chr9 70156782 70157145 -47705482 - MLT1B LTR MaLR -1 389 6 1607 164 34 0 chr9 70157181 70157449 -47705178 - AluJo SINE Alu -35 277 1 323 329 77 29 chr9 70159238 70159551 -47703076 + LTR16C LTR ERVL 107 434 -57 650 139 9 9 chr9 70160466 70160581 -47702046 + L1MB3 LINE L1 6044 6158 -25 334 266 60 40 chr9 70160759 70160958 -47701669 - LTR16B LTR ERVL 0 464 262 1293 122 0 22 chr9 70160960 70161141 -47701486 - AluSg/x SINE Alu -17 295 119 433 164 0 0 chr9 70161141 70161202 -47701425 - AluJ/FLAM SINE Alu -251 61 1 2269 82 6 41 chr9 70161527 70161846 -47700781 + AluSc SINE Alu 1 308 -1 624 213 44 25 chr9 70161850 70162010 -47700617 + MLT1E3 LTR MaLR 458 620 -4 321 313 227 30 chr9 70162016 70162316 -47700311 + L1ME LINE L1 3693 4051 -2095 386 275 70 59 chr9 70164946 70164996 -47697631 + L1ME LINE L1 5467 5515 -647 2511 87 0 0 chr9 70164996 70165306 -47697321 + AluSg SINE Alu 1 310 0 386 275 70 59 chr9 70165306 70165582 -47697045 + L1ME LINE L1 5515 5790 -372 4227 238 61 35 chr9 70166373 70166574 -47696053 + L1M4 LINE L1 2146 2340 -3806 6116 135 107 11 chr9 70166574 70166752 -47695875 + Tigger3b DNA MER2_type 1 160 -2868 2264 91 0 32 chr9 70166752 70167061 -47695566 + AluSc SINE Alu 1 299 -10 6116 135 107 11 chr9 70167061 70168002 -47694625 + Tigger3b DNA MER2_type 160 1228 -3 4227 238 61 35 chr9 70168002 70168833 -47693794 + L1M4 LINE L1 2340 3148 -2998 2537 65 3 3 chr9 70168833 70169139 -47693488 - AluY SINE Alu -5 306 1 4227 238 61 35 chr9 70169139 70169424 -47693203 + L1M4 LINE L1 3148 3424 -2722 191 86 0 29 chr9 70169424 70169459 -47693168 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4227 238 61 35 chr9 70169459 70169709 -47692918 + L1M4 LINE L1 3424 3756 -2390 457 287 93 46 chr9 70169760 70169997 -47692630 + L1M4 LINE L1 4785 5032 -1114 1942 122 4 4 chr9 70170045 70170316 -47692311 + AluSg SINE Alu 33 303 -7 1976 85 7 25 chr9 70170513 70170796 -47691831 - AluSp SINE Alu -23 290 13 423 38 0 0 chr9 70170929 70170982 -47691645 + (CA)n Simple_repeat Simple_repeat 2 54 0 1801 173 0 23 chr9 70171291 70171598 -47691029 - AluJo SINE Alu -8 304 5 1989 113 10 26 chr9 70172209 70172520 -47690107 - AluSx SINE Alu 0 312 1 560 307 123 54 chr9 70172854 70173047 -47689580 + L1ME4a LINE L1 4007 4185 -1961 1856 150 3 0 chr9 70173047 70173347 -47689280 - AluSx SINE Alu -11 301 1 560 307 123 54 chr9 70173347 70173923 -47688704 + L1ME4a LINE L1 4185 4833 -1313 367 331 45 6 chr9 70174171 70174328 -47688299 + L1ME4a LINE L1 5615 5777 -344 534 156 0 0 chr9 70174350 70174440 -47688187 - AluSp/q SINE Alu -13 300 211 362 326 96 42 chr9 70174621 70174882 -47687745 + L1ME4a LINE L1 5845 6119 -2 2395 80 0 0 chr9 70174965 70175276 -47687351 - AluY SINE Alu 0 311 1 4404 147 65 70 chr9 70175280 70176194 -47686433 + MER21A LTR ERV1 17 925 -6 1850 124 40 27 chr9 70177280 70177579 -47685048 + AluSx SINE Alu 5 307 -5 233 211 268 0 chr9 70177768 70177839 -47684788 - MIR SINE MIR -72 190 101 1664 183 67 6 chr9 70178521 70178866 -47683761 + L1MB3 LINE L1 5818 6183 0 1144 111 0 39 chr9 70179763 70179943 -47682684 - AluSg/x SINE Alu -2 308 136 235 118 82 18 chr9 70180650 70180760 -47681867 + (CA)n Simple_repeat Simple_repeat 1 117 0 227 139 79 18 chr9 70180786 70180951 -47681676 + (CA)n Simple_repeat Simple_repeat 1 175 0 317 114 78 18 chr9 70180964 70181131 -47681496 + (CA)n Simple_repeat Simple_repeat 2 178 0 341 122 66 19 chr9 70181185 70181408 -47681219 + (CA)n Simple_repeat Simple_repeat 1 233 0 473 83 9 3 chr9 70183877 70184107 -47678520 + AluY SINE Alu 1 310 0 21 36 0 0 chr9 70184201 70184229 -47678398 + AT_rich Low_complexity Low_complexity 1 28 0 2186 111 0 0 chr9 70184693 70184990 -47677637 - AluSx SINE Alu -15 297 1 262 312 49 58 chr9 70184991 70185196 -47677431 + L1ME3A LINE L1 5760 5962 -208 289 222 22 0 chr9 70187760 70187850 -47674777 + (TG)n Simple_repeat Simple_repeat 2 93 0 450 242 10 12 chr9 70187889 70188387 -47674240 + (TG)n Simple_repeat Simple_repeat 1 497 0 1755 168 58 34 chr9 70189029 70189192 -47673435 + MLT1B LTR MaLR 1 159 -231 2173 103 3 3 chr9 70189192 70189492 -47673135 + AluSx SINE Alu 1 300 -12 1755 168 58 34 chr9 70189492 70189709 -47672918 + MLT1B LTR MaLR 159 390 0 1022 262 132 85 chr9 70190562 70191709 -47670918 + L1MC4 LINE L1 6696 7896 -146 1045 123 37 0 chr9 70191712 70191874 -47670753 - AluSg/x SINE Alu -16 296 129 585 111 0 0 chr9 70191877 70191958 -47670669 - AluY SINE Alu -236 82 2 210 323 118 31 chr9 70192471 70192687 -47669940 - MIR SINE MIR -31 231 4 184 182 23 45 chr9 70192710 70192754 -47669873 + MER5A DNA MER1_type 9 51 -138 224 323 62 15 chr9 70194452 70194582 -47668045 + MIR SINE MIR 39 174 -88 194 188 0 0 chr9 70194969 70195001 -47667626 + MER5C DNA MER1_type 291 322 -2 824 188 28 17 chr9 70195076 70195257 -47667370 - L1MB3 LINE L1 0 6183 6001 365 264 0 38 chr9 70196634 70196740 -47665887 - MIR SINE MIR -5 257 156 23 54 0 0 chr9 70196883 70196920 -47665707 + AT_rich Low_complexity Low_complexity 1 37 0 1628 137 50 18 chr9 70197571 70197849 -47664778 - AluJb SINE Alu -25 287 1 2207 103 3 6 chr9 70198048 70198359 -47664268 - AluSg SINE Alu 0 310 1 231 288 51 42 chr9 70198413 70198531 -47664096 + L1ME LINE L1 5490 5608 -513 774 204 0 0 chr9 70198631 70198812 -47663815 + L1 LINE L1 5096 5276 -870 2096 115 0 0 chr9 70198868 70199163 -47663464 - AluSx SINE Alu -17 295 1 1395 159 159 17 chr9 70199417 70199719 -47662908 - MER7A DNA MER2_type -1 345 3 2128 243 81 38 chr9 70199740 70200514 -47662113 + L1MC4a LINE L1 6986 7793 -15 833 180 124 10 chr9 70200524 70200718 -47661909 + L1MA4 LINE L1 6079 6294 -6 26 30 0 0 chr9 70200718 70200751 -47661876 + AT_rich Low_complexity Low_complexity 1 33 0 26 30 0 0 chr9 70200917 70200950 -47661677 + AT_rich Low_complexity Low_complexity 1 33 0 2187 99 0 10 chr9 70201046 70201360 -47661267 + AluSx SINE Alu 1 311 -1 1901 134 14 0 chr9 70201598 70201888 -47660739 - AluSx SINE Alu -18 294 1 2081 94 17 0 chr9 70203026 70203323 -47659304 - AluSp SINE Alu -11 302 1 1962 117 3 23 chr9 70204370 70204679 -47657948 - AluSx SINE Alu -9 303 1 24 0 0 0 chr9 70205834 70205858 -47656769 + AT_rich Low_complexity Low_complexity 1 24 0 926 230 107 94 chr9 70205887 70206474 -47656153 - MLT1G1 LTR MaLR 0 595 1 341 192 55 14 chr9 70207770 70207843 -47654784 - MER58 DNA MER1_type -2 2418 2343 * 608 230 240 5 chr9 70207832 70208036 -47654591 - MER58 DNA MER1_type -2163 257 6 1444 230 78 28 chr9 70208190 70208624 -47654003 - L1MD2 LINE L1 -218 6141 5686 1338 212 10 7 chr9 70208632 70208924 -47653703 + AluJo SINE Alu 8 300 -12 430 198 44 0 chr9 70208925 70209016 -47653611 - L1MD2 LINE L1 -471 5695 5601 882 247 66 66 chr9 70209118 70209555 -47653072 - L1MDb LINE L1 -5198 1211 775 441 0 0 0 chr9 70209645 70209694 -47652933 + (CA)n Simple_repeat Simple_repeat 2 50 0 708 191 52 57 chr9 70210502 70210712 -47651915 + MER3 DNA MER1_type 1 209 0 1111 116 35 0 chr9 70210758 70210931 -47651696 + AluSg/x SINE Alu 124 302 -8 2072 128 0 13 chr9 70210931 70211244 -47651383 + AluSg SINE Alu 1 309 -1 190 204 23 0 chr9 70212285 70212329 -47650298 - L2 LINE L2 -1514 1800 1756 2089 170 65 91 chr9 70213434 70213869 -47648758 - L1MB8 LINE L1 -16 6162 5744 225 0 0 0 chr9 70213869 70213894 -47648733 + (TCTA)n Simple_repeat Simple_repeat 4 28 0 2089 170 65 91 chr9 70213894 70214040 -47648587 - L1MB8 LINE L1 -434 5744 5596 756 163 0 37 chr9 70214040 70214175 -47648452 + AluJo SINE Alu 17 146 -166 3154 181 46 31 chr9 70214194 70214494 -47648133 - L1MB8 LINE L1 -600 5584 5290 1357 122 125 122 chr9 70214494 70214663 -47647964 - MLT1A2 LTR MaLR -4 370 203 1682 180 0 13 chr9 70214663 70214979 -47647648 - AluJo SINE Alu 0 312 1 1357 122 125 122 chr9 70214979 70215014 -47647613 - MLT1A2 LTR MaLR -171 203 170 2179 84 0 23 chr9 70215014 70215313 -47647314 - AluY SINE Alu -19 292 1 1357 122 125 122 chr9 70215313 70215476 -47647151 - MLT1A2 LTR MaLR -204 170 1 3154 181 46 31 chr9 70215476 70216261 -47646366 - L1MB8 LINE L1 -894 5290 4475 321 47 0 0 chr9 70217070 70217113 -47645514 + (TG)n Simple_repeat Simple_repeat 2 44 0 272 292 85 51 chr9 70217468 70217740 -47644887 + L1MC4a LINE L1 4228 4516 -1630 1964 122 7 3 chr9 70217740 70218035 -47644592 - AluSg SINE Alu -14 296 1 272 292 85 51 chr9 70218035 70218115 -47644512 + L1MC4a LINE L1 4516 4592 -1554 382 221 149 45 chr9 70218188 70218342 -47644285 + L1MC4a LINE L1 4691 4860 -1286 2236 96 0 6 chr9 70218346 70218659 -47643968 - AluY SINE Alu 0 311 1 21 36 0 0 chr9 70218955 70218983 -47643644 + AT_rich Low_complexity Low_complexity 1 28 0 522 180 40 0 chr9 70219011 70219111 -47643516 - MLT1D LTR MaLR -4 501 398 1131 211 104 23 chr9 70219142 70219450 -47643177 - MLT1D LTR MaLR -172 333 1 379 320 71 53 chr9 70219511 70219833 -47642794 + L1MC4a LINE L1 5498 5825 -1983 2000 101 23 23 chr9 70220943 70221251 -47641376 - AluSx SINE Alu -4 308 1 1130 220 101 26 chr9 70223180 70223525 -47639102 - MLT1B LTR MaLR -19 371 1 357 245 39 29 chr9 70223759 70223821 -47638806 + L1ME1 LINE L1 6059 6124 -42 2078 127 13 0 chr9 70223821 70224129 -47638498 - AluSx SINE Alu 0 312 1 357 245 39 29 chr9 70224129 70224168 -47638459 + L1ME1 LINE L1 6124 6161 -5 262 122 0 24 chr9 70225174 70225215 -47637412 + MLT1B LTR MaLR 1 40 -350 239 272 0 43 chr9 70227037 70227199 -47635428 + G-rich Low_complexity Low_complexity 2 156 0 390 322 49 29 chr9 70227365 70227570 -47635057 - L1MEc LINE L1 -4134 2429 2221 445 262 68 45 chr9 70227733 70227954 -47634673 - L1MEc LINE L1 -4479 1905 1680 1544 183 111 0 chr9 70227963 70228296 -47634331 - L1MA6 LINE L1 0 6300 5931 2273 74 14 0 chr9 70228334 70228631 -47633996 - AluSx SINE Alu -11 301 1 2483 249 25 68 chr9 70228695 70229483 -47633144 - MER21B LTR ERV1 -109 754 1 2038 110 3 0 chr9 70229655 70229967 -47632660 + AluSx SINE Alu 1 313 0 1639 157 8 8 chr9 70229985 70230280 -47632347 + AluJo SINE Alu 20 314 0 1626 185 120 46 chr9 70230478 70230911 -47631716 + MLT1C LTR MaLR 1 465 -2 291 28 0 0 chr9 70231024 70231060 -47631567 + (CA)n Simple_repeat Simple_repeat 2 37 0 1763 127 22 4 chr9 70231219 70231566 -47631061 + AluSx SINE Alu 21 312 0 2070 114 13 0 chr9 70231945 70232253 -47630374 - AluSp SINE Alu -1 312 1 319 296 65 19 chr9 70232421 70232529 -47630098 + L1MB3 LINE L1 5337 5449 -2359 539 229 9 0 chr9 70232531 70232636 -47629991 - FLAM_A SINE Alu -36 106 1 283 170 15 52 chr9 70232655 70232733 -47629894 + L1MB3 LINE L1 5499 5572 -612 438 221 239 84 chr9 70232846 70233181 -47629446 - MLT1H1 LTR MaLR 0 555 169 308 328 0 0 chr9 70233183 70233267 -47629360 - AluS SINE Alu 0 305 222 995 174 68 5 chr9 70233439 70233646 -47628981 + L1MB3 LINE L1 5915 6134 -49 245 279 39 39 chr9 70234369 70234473 -47628154 - MLT1L LTR MaLR -375 240 137 1651 136 158 181 chr9 70235046 70235641 -47626986 - LTR12 LTR ERV1 -133 581 1 378 280 11 0 chr9 70237577 70237670 -47624957 - L3 LINE CR1 -177 1400 1307 2185 61 24 3 chr9 70237684 70237978 -47624649 + AluY SINE Alu 1 300 -11 245 284 0 12 chr9 70238204 70238285 -47624342 - MER116 DNA Mariner 0 80 1 570 215 0 8 chr9 70238307 70238428 -47624199 + L1MB7 LINE L1 6043 6162 -22 1798 168 3 0 chr9 70239921 70240219 -47622408 + AluJo SINE Alu 1 299 -13 286 302 155 16 chr9 70240300 70240429 -47622198 - L2 LINE L2 -2 3311 3165 2085 79 27 0 chr9 70241277 70241569 -47621058 + AluSx SINE Alu 1 300 -12 1708 176 41 31 chr9 70241577 70241786 -47620841 + L1MB3 LINE L1 5276 5492 -682 374 38 0 19 chr9 70241786 70241839 -47620788 + (CAA)n Simple_repeat Simple_repeat 2 53 0 1708 176 41 31 chr9 70241839 70242016 -47620611 + L1MB3 LINE L1 5492 5666 -508 2492 56 0 0 chr9 70242145 70242447 -47620180 - AluY SINE Alu -9 302 1 723 202 69 39 chr9 70242923 70243126 -47619501 + MER3 DNA MER1_type 1 209 0 538 186 120 104 chr9 70244135 70244206 -47618421 - MER5A DNA MER1_type 0 189 121 2209 56 35 0 chr9 70244206 70244490 -47618137 + AluY SINE Alu 1 294 -17 538 186 120 104 chr9 70244490 70244529 -47618098 - MER5A DNA MER1_type -68 121 84 1741 167 3 28 chr9 70244529 70244847 -47617780 - AluJb SINE Alu -2 310 1 538 186 120 104 chr9 70244847 70244918 -47617709 - MER5A DNA MER1_type -105 84 4 303 28 0 0 chr9 70245157 70245193 -47617434 + (TG)n Simple_repeat Simple_repeat 1 36 0 2074 98 7 20 chr9 70245656 70245794 -47616833 + AluSx SINE Alu 1 139 -173 2291 61 3 10 chr9 70245794 70246091 -47616536 + AluY SINE Alu 1 295 -16 2074 98 7 20 chr9 70246091 70246258 -47616369 + AluSx SINE Alu 139 302 -10 1565 188 9 38 chr9 70246390 70246735 -47615892 + L1MB3 LINE L1 5849 6183 0 196 250 0 59 chr9 70246794 70246862 -47615765 + L2 LINE L2 2650 2713 -601 1451 209 100 83 chr9 70247243 70247254 -47615373 + MER74B LTR ERVL 1 10 -612 2216 89 10 3 chr9 70247254 70247558 -47615069 - AluSx SINE Alu -6 306 1 1451 209 100 83 chr9 70247558 70248086 -47614541 + MER74B LTR ERVL 10 549 -73 516 286 60 15 chr9 70248242 70248441 -47614186 + MIR SINE MIR 21 228 -34 410 215 35 62 chr9 70249674 70249818 -47612809 + MER5B DNA MER1_type 1 140 -38 295 194 104 0 chr9 70249825 70249892 -47612735 - MER5B DNA MER1_type 0 178 105 1241 226 35 5 chr9 70249979 70250313 -47612314 + LTR10B LTR ERV1 181 547 0 226 287 7 44 chr9 70251428 70251564 -47611063 + L1ME4a LINE L1 2898 3028 -3118 362 311 152 61 chr9 70251568 70252146 -47610481 + L1ME4a LINE L1 4629 5282 -864 1596 96 8 29 chr9 70252146 70252386 -47610241 + AluSg/x SINE Alu 76 310 0 362 311 152 61 chr9 70252386 70252499 -47610128 + L1ME4a LINE L1 5282 5383 -763 240 306 40 24 chr9 70252586 70252710 -47609917 + L1ME4a LINE L1 5481 5606 -515 1840 100 7 15 chr9 70252745 70253014 -47609613 + AluY SINE Alu 21 287 -24 359 253 59 145 chr9 70253040 70253364 -47609263 + L1ME4a LINE L1 5638 5933 -188 1635 165 30 36 chr9 70253381 70253715 -47608912 + L1MB5 LINE L1 5843 6174 0 284 138 17 17 chr9 70254070 70254128 -47608499 + (CA)n Simple_repeat Simple_repeat 2 59 0 1006 213 38 13 chr9 70254165 70254396 -47608231 - MLT1B LTR MaLR -17 450 214 984 133 13 7 chr9 70254396 70254547 -47608080 + MLT1A2 LTR MaLR 1 152 -222 6457 80 3 2 chr9 70254547 70254913 -47607714 - L1PA11 LINE L1 0 6174 5810 249 33 0 0 chr9 70254913 70254943 -47607684 + (TA)n Simple_repeat Simple_repeat 1 30 0 6457 80 3 2 chr9 70254943 70255921 -47606706 - L1PA11 LINE L1 -364 5810 4802 3876 233 45 22 chr9 70255921 70256866 -47605761 - L1PA12 LINE L1 -6613 968 2 771 218 71 10 chr9 70256897 70257094 -47605533 + MLT1A2 LTR MaLR 182 374 0 * 1054 211 5 14 chr9 70257094 70257305 -47605322 - MLT1B LTR MaLR -181 209 1 929 247 135 53 chr9 70257891 70258402 -47604225 + MLT1H1 LTR MaLR 1 553 -2 1954 123 13 3 chr9 70258463 70258771 -47603856 + AluY SINE Alu 1 311 0 240 306 40 24 chr9 70258971 70259095 -47603532 + L1ME4a LINE L1 5481 5606 -515 1840 100 7 15 chr9 70259130 70259399 -47603228 + AluY SINE Alu 21 287 -24 359 253 59 145 chr9 70259425 70259749 -47602878 + L1ME4a LINE L1 5638 5933 -188 1601 168 30 36 chr9 70259766 70260100 -47602527 + L1MB5 LINE L1 5843 6174 0 1453 153 88 75 chr9 70262300 70262685 -47599942 - MLT1B LTR MaLR 0 390 1 2705 3 0 0 chr9 70262826 70263125 -47599502 + AluYa5 SINE Alu 1 299 -12 1803 131 20 24 chr9 70263796 70264094 -47598533 - AluJo SINE Alu -15 297 1 1293 164 65 55 chr9 70264255 70264548 -47598079 + AluSx SINE Alu 1 296 -16 895 190 6 0 chr9 70264552 70264710 -47597917 + FRAM SINE Alu 1 158 -18 2142 99 0 3 chr9 70265045 70265337 -47597290 + AluSc SINE Alu 1 291 -18 306 292 55 32 chr9 70265449 70265668 -47596959 - L1M4 LINE L1 -699 5479 5256 315 281 132 16 chr9 70266386 70266507 -47596120 + L1MC5 LINE L1 7792 7926 -35 1975 109 0 32 chr9 70266668 70266981 -47595646 - AluSx SINE Alu -9 303 1 2329 84 0 0 chr9 70267062 70267373 -47595254 - AluY SINE Alu 0 311 1 844 256 104 119 chr9 70267378 70267855 -47594772 - L1MC4 LINE L1 0 8042 7559 198 0 0 0 chr9 70267855 70267877 -47594750 + (TTCTC)n Simple_repeat Simple_repeat 4 25 0 2047 119 0 0 chr9 70267880 70268165 -47594462 - AluSg SINE Alu -25 285 1 844 256 104 119 chr9 70268165 70268648 -47593979 - L1MC4 LINE L1 -485 7557 7093 963 199 58 141 chr9 70268686 70269062 -47593565 + MLT1C LTR MaLR 46 467 0 2330 245 51 42 chr9 70269067 70269945 -47592682 - L1MC4a LINE L1 -814 6994 6109 2774 203 31 18 chr9 70269948 70270106 -47592521 + L1 LINE L1 3961 4116 -2030 1679 156 100 16 chr9 70270106 70270427 -47592200 - MER7A DNA MER2_type 0 346 1 2774 203 31 18 chr9 70270427 70270852 -47591775 + L1 LINE L1 4116 4555 -1591 1438 166 19 88 chr9 70270852 70271172 -47591455 + AluJb SINE Alu 1 298 -4 2774 203 31 18 chr9 70271172 70271238 -47591389 + L1 LINE L1 4555 4619 -1527 587 237 7 0 chr9 70271241 70271376 -47591251 + MER3 DNA MER1_type 73 208 -1 27 29 0 0 chr9 70273953 70273987 -47588640 + AT_rich Low_complexity Low_complexity 1 34 0 863 98 8 8 chr9 70276183 70276306 -47586321 - AluSg SINE Alu -187 123 1 5438 216 47 19 chr9 70276309 70276508 -47586119 - L1M4 LINE L1 -5305 1237 1045 1928 170 0 0 chr9 70276508 70276808 -47585819 + AluJb SINE Alu 1 300 -12 5438 216 47 19 chr9 70276808 70276948 -47585679 - L1M4 LINE L1 -5497 1045 910 2377 134 22 6 chr9 70276948 70277307 -47585320 + MLT1A1 LTR MaLR 1 365 0 5438 216 47 19 chr9 70277307 70278167 -47584460 - L1M4 LINE L1 -5632 910 4 2446 274 134 39 chr9 70278168 70278235 -47584392 + L2 LINE L2 1836 1895 -1418 2078 109 0 0 chr9 70278235 70278547 -47584080 - AluSx SINE Alu 0 312 1 2446 274 134 39 chr9 70278547 70279326 -47583301 + L2 LINE L2 1895 2856 -457 2071 101 3 3 chr9 70279326 70279622 -47583005 + AluSg SINE Alu 1 296 -14 2446 274 134 39 chr9 70279622 70279982 -47582645 + L2 LINE L2 2856 3180 -133 307 232 0 0 chr9 70280782 70280838 -47581789 + MIR SINE MIR 185 240 -22 3677 252 70 15 chr9 70281236 70283047 -47579580 + L1ME LINE L1 1883 3766 -2449 1964 133 0 3 chr9 70283052 70283345 -47579282 + AluSc SINE Alu 7 298 -11 2120 114 3 0 chr9 70283509 70283815 -47578812 - AluSx SINE Alu -5 307 1 1089 319 97 44 chr9 70284263 70285470 -47577157 - L2 LINE L2 -91 3181 1906 419 232 16 0 chr9 70285850 70285975 -47576652 + L1ME LINE L1 5170 5296 -919 1828 149 0 10 chr9 70286027 70286329 -47576298 - AluJo SINE Alu -11 301 3 371 245 19 21 chr9 70286381 70286542 -47576085 + L1ME LINE L1 5341 5505 -726 267 326 31 10 chr9 70286560 70286658 -47575969 + L2 LINE L2 2901 3000 -313 2334 227 44 10 chr9 70286787 70287289 -47575338 + MLT1F LTR MaLR 24 542 0 181 250 21 21 chr9 70287613 70287661 -47574966 - MIR SINE MIR -98 110 63 817 247 38 11 chr9 70289574 70289760 -47572867 - MLT2D LTR ERVL -48 366 176 2108 96 7 0 chr9 70289836 70290118 -47572509 + AluSq SINE Alu 1 284 -29 360 0 0 0 chr9 70290121 70290161 -47572466 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 1038 103 10 118 chr9 70290162 70290366 -47572261 - MLT2D LTR ERVL -227 187 6 440 195 0 0 chr9 70290443 70290520 -47572107 - Tigger7 DNA MER2_type -20 2567 2491 * 1150 203 22 62 chr9 70290518 70290634 -47571993 - Tigger7 DNA MER2_type -284 266 147 2016 129 3 0 chr9 70290634 70290929 -47571698 + AluSq SINE Alu 1 296 -17 2118 124 0 0 chr9 70290929 70291227 -47571400 + AluSg SINE Alu 1 299 -11 1150 203 22 62 chr9 70291227 70291385 -47571242 - Tigger7 DNA MER2_type -401 149 2 1254 144 27 173 chr9 70291516 70291617 -47571010 + MLT1A1 LTR MaLR 1 115 -250 1809 143 29 0 chr9 70291617 70291896 -47570731 + AluSx SINE Alu 1 287 -25 414 39 0 0 chr9 70291896 70291948 -47570679 + (CATA)n Simple_repeat Simple_repeat 2 53 0 1254 144 27 173 chr9 70291948 70292220 -47570407 + MLT1A1 LTR MaLR 113 320 -45 2299 68 0 7 chr9 70292553 70292846 -47569781 - AluY SINE Alu -20 291 1 1871 113 7 10 chr9 70292848 70293139 -47569488 - AluSq SINE Alu -20 293 4 376 208 88 40 chr9 70293339 70293464 -47569163 - MLT1H LTR MaLR 0 549 419 706 241 48 19 chr9 70293587 70293794 -47568833 - MLT1H LTR MaLR -295 254 42 22 35 0 0 chr9 70294108 70294137 -47568490 + AT_rich Low_complexity Low_complexity 1 29 0 2237 108 3 0 chr9 70294222 70294529 -47568098 + AluSq SINE Alu 3 310 -3 2038 148 27 91 chr9 70294612 70294996 -47567631 + L1MB3 LINE L1 5731 6085 -98 1741 80 0 21 chr9 70294996 70295235 -47567392 - AluY SINE Alu -34 277 44 2038 148 27 91 chr9 70295235 70295290 -47567337 + L1MB3 LINE L1 6085 6142 -41 2892 50 3 0 chr9 70295291 70295631 -47566996 + HERV17 LTR ERV1 4210 4550 -4076 * 7281 58 1 0 chr9 70295618 70296483 -47566144 + HERV17 LTR ERV1 7757 8622 -4 2660 65 0 3 chr9 70296486 70296811 -47565816 + LTR17 LTR ERV1 1 324 -456 2194 113 3 0 chr9 70296849 70297159 -47565468 - AluSx SINE Alu -1 311 1 304 65 0 0 chr9 70297159 70297205 -47565422 + L1MB3 LINE L1 6137 6182 -1 2050 125 3 0 chr9 70297341 70297672 -47564955 - AluSq SINE Alu 0 332 1 1563 252 38 49 chr9 70298460 70299008 -47563619 + MER34 LTR ERV1 1 542 0 2157 88 3 36 chr9 70299092 70299398 -47563229 + AluSx SINE Alu 1 296 -16 516 212 56 39 chr9 70299668 70299795 -47562832 - L1MB7 LINE L1 -5 6179 6047 2005 138 3 0 chr9 70299795 70300100 -47562527 + AluSx SINE Alu 1 306 -6 516 212 56 39 chr9 70300100 70300151 -47562476 - L1MB7 LINE L1 -137 6047 5998 17266 165 45 5 chr9 70300151 70303067 -47559560 + ERVL LTR ERVL 2120 5152 -612 2131 68 4 4 chr9 70303350 70303809 -47558818 + AluY SINE Alu 1 459 0 934 90 0 15 chr9 70303912 70304045 -47558582 - AluSc SINE Alu -178 131 1 384 306 137 34 chr9 70304046 70304484 -47558143 + L1MC5 LINE L1 7297 7779 -182 2508 145 9 42 chr9 70304502 70304950 -47557677 - Tigger2a DNA MER2_type 0 434 2 21 36 0 0 chr9 70304982 70305010 -47557617 + AT_rich Low_complexity Low_complexity 1 28 0 470 247 105 105 chr9 70305194 70305548 -47557079 - MLT1L LTR MaLR -45 570 111 204 419 34 14 chr9 70305779 70305927 -47556700 - L2 LINE L2 -5 3267 3117 2226 91 7 0 chr9 70305961 70306270 -47556357 + AluSq SINE Alu 1 311 -2 2161 102 0 0 chr9 70307972 70308265 -47554362 + AluSx SINE Alu 5 297 -15 625 104 14 146 chr9 70308271 70308373 -47554254 - L1MB3 LINE L1 -4 6179 6100 1721 144 6 38 chr9 70308373 70308686 -47553941 + AluJo SINE Alu 10 312 0 625 104 14 146 chr9 70308686 70308727 -47553900 - L1MB3 LINE L1 -83 6100 6055 498 100 29 0 chr9 70308736 70308806 -47553821 - AluJb SINE Alu -170 142 71 1714 219 72 56 chr9 70309020 70309572 -47553055 - MER34B LTR ERV1 0 565 5 284 276 126 0 chr9 70310339 70310466 -47552161 + MER104 DNA Tc2 35 177 -3 2335 71 7 3 chr9 70312691 70313001 -47549626 + AluY SINE Alu 1 311 0 316 317 50 50 chr9 70313055 70313216 -47549411 + MER58A DNA MER1_type 16 176 -48 269 272 239 11 chr9 70313521 70313690 -47548937 - L2 LINE L2 -1 3312 3098 1471 163 40 0 chr9 70313690 70313941 -47548686 - AluJb SINE Alu -51 261 1 562 289 34 10 chr9 70315135 70315339 -47547288 + MER3 DNA MER1_type 1 209 0 652 130 33 57 chr9 70315617 70315778 -47546849 + L1MB7 LINE L1 6017 6178 0 1009 275 134 14 chr9 70319179 70319408 -47543219 + L1MB8 LINE L1 3175 3375 -2771 1718 136 44 7 chr9 70319408 70319702 -47542925 + AluSq SINE Alu 2 306 -7 1009 275 134 14 chr9 70319702 70319978 -47542649 + L1MB8 LINE L1 3375 3741 -2405 318 313 0 0 chr9 70319978 70320058 -47542569 + L1MB8 LINE L1 4106 4185 -1961 2915 218 74 35 chr9 70320063 70320185 -47542442 + L1MB8 LINE L1 4365 4481 -1703 2083 115 0 0 chr9 70320185 70320481 -47542146 + AluSg SINE Alu 1 296 -14 2048 136 0 10 chr9 70320485 70320795 -47541832 + AluSx SINE Alu 1 307 -5 2915 218 74 35 chr9 70320795 70321209 -47541418 + L1MB8 LINE L1 4483 4879 -1305 1094 255 105 28 chr9 70321209 70321676 -47540951 + MLT1D LTR MaLR 1 503 -2 2915 218 74 35 chr9 70321676 70322328 -47540299 + L1MB8 LINE L1 4879 5504 -680 1798 198 37 6 chr9 70322328 70322682 -47539945 + MLT1A1 LTR MaLR 1 365 0 2915 218 74 35 chr9 70322682 70322807 -47539820 + L1MB8 LINE L1 5504 5623 -561 2430 105 62 0 chr9 70322807 70323160 -47539467 - THE1C LTR MaLR 0 375 1 2915 218 74 35 chr9 70323160 70323363 -47539264 + L1MB8 LINE L1 5623 5948 -236 1580 101 4 13 chr9 70323366 70323594 -47539033 + AluSp SINE Alu 1 226 -87 482 230 61 30 chr9 70323694 70323859 -47538768 + L1MB8 LINE L1 5945 6114 -64 181 156 31 0 chr9 70324128 70324160 -47538467 + MIR3 SINE MIR 127 159 -49 1339 186 98 4 chr9 70324335 70324599 -47538028 - AluJo SINE Alu -18 294 6 1834 147 86 13 chr9 70324782 70325096 -47537531 - MER1B DNA MER1_type 0 337 1 2013 123 0 0 chr9 70326185 70326454 -47536173 - AluSg SINE Alu -41 269 1 685 267 31 14 chr9 70326454 70326684 -47535943 - L1MC4a LINE L1 -317 5804 5584 2106 99 42 0 chr9 70326690 70326973 -47535654 - AluSp SINE Alu -18 295 1 2285 122 0 0 chr9 70327111 70327422 -47535205 - AluSx SINE Alu -1 311 1 889 145 6 0 chr9 70328156 70328315 -47534312 + AluSp SINE Alu 1 160 -153 4395 232 65 32 chr9 70328428 70329848 -47532779 - L1MDb LINE L1 -3049 3491 2119 2070 153 47 34 chr9 70329848 70330233 -47532394 - MLT1B LTR MaLR 0 390 1 4395 232 65 32 chr9 70330233 70331305 -47531322 - L1MDb LINE L1 -4421 2119 944 1734 185 87 53 chr9 70331305 70331684 -47530943 + MSTD LTR MaLR 1 392 -4 4395 232 65 32 chr9 70331684 70331827 -47530800 - L1MDb LINE L1 -5596 944 807 726 284 51 40 chr9 70332089 70332403 -47530224 - L1MDb LINE L1 -6196 344 67 1255 151 5 23 chr9 70332421 70332640 -47529987 - AluSg/x SINE Alu -13 297 83 412 172 0 0 chr9 70332640 70332704 -47529923 - AluSp/q SINE Alu -63 250 187 1868 90 32 32 chr9 70332804 70333081 -47529546 + AluSx SINE Alu 24 300 -12 1771 96 25 90 chr9 70333095 70333418 -47529209 + AluSx SINE Alu 3 304 -8 479 285 27 27 chr9 70333729 70333915 -47528712 - LTR16C LTR ERVL -7 484 299 315 265 24 0 chr9 70334475 70334558 -47528069 + HAL1 LINE L1 771 855 -1652 2398 99 0 0 chr9 70334721 70335024 -47527603 - AluSx SINE Alu -9 303 1 1652 168 17 3 chr9 70335074 70335371 -47527256 - AluJb SINE Alu -11 301 1 1143 92 0 0 chr9 70335793 70335935 -47526692 - AluSq/x SINE Alu -170 142 1 975 186 186 0 chr9 70335936 70336146 -47526481 + MER57A LTR ERV1 125 373 -30 2106 94 4 4 chr9 70336146 70336455 -47526172 - AluSg SINE Alu 0 313 5 251 275 12 38 chr9 70336645 70336725 -47525902 + L1MC/D LINE L1 5701 5778 -2030 238 136 86 193 chr9 70336810 70336908 -47525719 - L2 LINE L2 -2752 562 482 2444 57 7 13 chr9 70336908 70337207 -47525420 + AluSc SINE Alu 1 297 -12 238 136 86 193 chr9 70337207 70337248 -47525379 - L2 LINE L2 -2832 482 438 * 953 238 250 43 chr9 70337237 70337797 -47524830 + L2 LINE L2 1116 1791 -1523 366 158 61 0 chr9 70337860 70337942 -47524685 - L1M4 LINE L1 -5230 1312 1226 1132 377 6 57 chr9 70337944 70338260 -47524367 - AluSx SINE Alu 0 302 3 248 319 58 0 chr9 70338270 70338408 -47524219 + HAL1 LINE L1 1091 1236 -1271 776 156 78 0 chr9 70338408 70338536 -47524091 + AluSg/x SINE Alu 166 303 -7 1605 99 0 0 chr9 70338577 70338778 -47523849 - AluSc SINE Alu -108 201 1 2313 69 46 16 chr9 70338780 70339084 -47523543 - AluSp SINE Alu 0 313 1 394 269 103 17 chr9 70339783 70339958 -47522669 + MLT1L LTR MaLR 339 528 -87 1163 258 32 60 chr9 70340018 70340552 -47522075 + MER34 LTR ERV1 24 542 0 306 270 90 0 chr9 70340580 70340691 -47521936 + HAL1 LINE L1 1461 1581 -926 272 260 121 8 chr9 70340734 70340949 -47521678 - L1M2 LINE L1 -743 5403 5203 2487 85 0 0 chr9 70341181 70341486 -47521141 + AluSq SINE Alu 1 305 -8 3265 170 6 2 chr9 70341658 70342170 -47520457 - MLT2B3 LTR ERVL -40 514 1 1101 168 6 0 chr9 70342843 70343016 -47519611 + AluJb SINE Alu 118 291 -21 26 0 0 0 chr9 70343207 70343233 -47519394 + AT_rich Low_complexity Low_complexity 1 26 0 409 97 0 65 chr9 70343272 70343359 -47519268 - Alu SINE Alu 0 310 228 2374 112 0 0 chr9 70343949 70344261 -47518366 + AluSq SINE Alu 1 312 -1 2345 105 0 3 chr9 70344343 70344648 -47517979 + AluSg SINE Alu 6 309 -1 200 367 44 0 chr9 70344901 70344991 -47517636 - L2 LINE L2 -43 3229 3136 760 291 102 44 chr9 70345558 70345806 -47516821 + L1M4 LINE L1 3713 3945 -2201 1013 203 11 23 chr9 70345806 70345983 -47516644 + FAM SINE Alu 1 175 0 760 291 102 44 chr9 70345983 70346364 -47516263 + L1M4 LINE L1 3945 4378 -1768 1480 287 100 6 chr9 70346516 70347154 -47515473 + L2 LINE L2 2203 2900 -414 522 295 181 41 chr9 70347221 70347780 -47514847 - L2 LINE L2 -971 2343 1707 998 26 9 0 chr9 70348564 70348679 -47513948 + L1PA2 LINE L1 6040 6155 0 243 0 0 0 chr9 70348695 70348722 -47513905 + (A)n Simple_repeat Simple_repeat 1 27 0 323 228 90 19 chr9 70348785 70348982 -47513645 + HAL1b LINE L1 1232 1348 0 222 118 0 0 chr9 70351126 70351160 -47511467 + (CA)n Simple_repeat Simple_repeat 2 35 0 2617 232 89 8 chr9 70351799 70352403 -47510224 - MER82 DNA MER2_type 0 653 1 1074 169 0 0 chr9 70352455 70352621 -47510006 - AluJb SINE Alu -11 301 136 5296 209 42 5 chr9 70352939 70354168 -47508459 + L1MB5 LINE L1 3815 5089 -1057 2193 106 3 0 chr9 70354178 70354471 -47508156 - AluY SINE Alu -17 294 1 917 142 0 0 chr9 70354473 70354600 -47508027 - AluSq/x SINE Alu -178 135 9 267 31 0 0 chr9 70354746 70354778 -47507849 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 2288 73 0 17 chr9 70354834 70355145 -47507482 + AluSg SINE Alu 1 306 0 525 198 0 0 chr9 70355296 70355422 -47507205 + (TCCA)n Simple_repeat Simple_repeat 3 128 0 2618 71 0 0 chr9 70355509 70355817 -47506810 + AluSc SINE Alu 1 308 -1 31 0 0 0 chr9 70356480 70356511 -47506116 + AT_rich Low_complexity Low_complexity 1 31 0 2220 106 0 0 chr9 70356751 70357033 -47505594 + AluSx SINE Alu 1 282 -30 207 0 0 0 chr9 70357038 70357061 -47505566 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 196 300 33 0 chr9 70357718 70357778 -47504849 - MIR SINE MIR -124 138 77 2384 63 0 13 chr9 70358688 70358989 -47503638 - AluY SINE Alu -14 297 1 1897 83 0 4 chr9 70359049 70359317 -47503310 - AluSc SINE Alu 0 305 39 2417 82 0 0 chr9 70359551 70359854 -47502773 - AluY SINE Alu -8 303 1 4408 176 61 20 chr9 70359855 70360136 -47502491 + L1MB5 LINE L1 5075 5343 -831 180 97 0 0 chr9 70360136 70360167 -47502460 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 4408 176 61 20 chr9 70360167 70360952 -47501675 + L1MB5 LINE L1 5343 6166 -8 2348 106 3 0 chr9 70361022 70361334 -47501293 + AluSp SINE Alu 1 313 0 664 190 25 147 chr9 70361342 70361647 -47500980 + L1ME2 LINE L1 5910 6331 -3 1982 106 14 24 chr9 70361656 70361949 -47500678 + AluSc SINE Alu 1 290 -19 1593 178 0 4 chr9 70361965 70362235 -47500392 + AluJo SINE Alu 1 269 -43 366 228 83 55 chr9 70362801 70362946 -47499681 + L1ME2 LINE L1 6002 6150 -14 2061 104 14 0 chr9 70363259 70363547 -47499080 - AluSg SINE Alu -17 293 2 590 269 183 27 chr9 70364103 70364665 -47497962 - L1ME4a LINE L1 -151 5970 5321 22 56 0 0 chr9 70364843 70364879 -47497748 + AT_rich Low_complexity Low_complexity 1 36 0 559 241 31 6 chr9 70366519 70366681 -47495946 + MER104 DNA Tc2 1 166 -14 7963 218 120 32 chr9 70366729 70367647 -47494980 + L1MD1 LINE L1 329 1165 -5375 2376 85 0 22 chr9 70367647 70367964 -47494663 + AluY SINE Alu 1 310 -1 7963 218 120 32 chr9 70367964 70369241 -47493386 + L1MD1 LINE L1 1165 2328 -4212 227 123 0 123 chr9 70369241 70369298 -47493329 + U6 snRNA snRNA 1 50 -57 7963 218 120 32 chr9 70369298 70369712 -47492915 + L1MD1 LINE L1 2328 2704 -3836 668 265 0 0 chr9 70369712 70369844 -47492783 + FLAM_A SINE Alu 1 132 -1 7963 218 120 32 chr9 70369844 70371233 -47491394 + L1MD1 LINE L1 2704 4746 -1794 4583 169 84 6 chr9 70371251 70372201 -47490426 + L1MD1 LINE L1 5619 6636 0 21 36 0 0 chr9 70372780 70372808 -47489819 + AT_rich Low_complexity Low_complexity 1 28 0 215 348 11 11 chr9 70373069 70373161 -47489466 - L2 LINE L2 0 3313 3222 400 342 151 22 chr9 70373388 70373748 -47488879 - L2 LINE L2 -191 3081 2671 1714 125 4 29 chr9 70373756 70374035 -47488592 + AluSq SINE Alu 42 313 0 2333 102 0 3 chr9 70374038 70374341 -47488286 + AluSx SINE Alu 1 302 -10 839 116 25 0 chr9 70376296 70376417 -47486210 - AluSg SINE Alu -186 124 1 2231 100 3 7 chr9 70377103 70377402 -47485225 + AluSx SINE Alu 1 298 -14 1924 164 0 3 chr9 70377654 70377971 -47484656 + AluSx SINE Alu 1 312 0 2361 233 60 16 chr9 70378193 70378859 -47483768 + L1MC4a LINE L1 7114 7808 0 1103 117 12 0 chr9 70379146 70379309 -47483318 - MER73 LTR ERVL -476 168 4 1797 135 0 32 chr9 70379582 70379890 -47482737 + AluJb SINE Alu 13 311 0 180 0 0 0 chr9 70379890 70379910 -47482717 + (T)n Simple_repeat Simple_repeat 1 20 0 6726 62 15 46 chr9 70379930 70380933 -47481694 - SVA Other Other 0 1386 433 1184 78 48 48 chr9 70380950 70381221 -47481406 - SVA Other Other -520 866 596 867 187 12 23 chr9 70381399 70381570 -47481057 + MLT1F1 LTR MaLR 1 169 -398 839 295 11 36 chr9 70381581 70381944 -47480683 + MLT1D-int LTR MaLR 248 601 -770 1318 239 48 3 chr9 70382019 70382333 -47480294 + MER58B DNA MER1_type 2 329 -12 956 175 6 12 chr9 70382409 70382575 -47480052 + FRAM SINE Alu 2 166 0 580 253 58 106 chr9 70382923 70383302 -47479325 + MLT1D-int LTR MaLR 964 1324 -47 993 213 50 16 chr9 70383395 70383653 -47478974 - L1MD3 LINE L1 0 7995 7729 1424 222 113 28 chr9 70383785 70384244 -47478383 + MLT1D LTR MaLR 8 505 0 2341 96 0 0 chr9 70384752 70385043 -47477584 - AluSx SINE Alu -21 291 1 378 246 33 82 chr9 70385086 70385269 -47477358 + L1MC5 LINE L1 7703 7876 -85 350 202 48 0 chr9 70385456 70385540 -47477087 - L1ME LINE L1 -467 5654 5567 1604 167 98 4 chr9 70386855 70387130 -47475497 + AluJo SINE Alu 1 301 -11 224 192 115 13 chr9 70387432 70387510 -47475117 - L2 LINE L2 -1265 2049 1964 249 184 0 0 chr9 70387827 70387865 -47474762 + Alu SINE Alu 1 38 -265 236 227 45 15 chr9 70388827 70388893 -47473734 + MIR3 SINE MIR 123 190 -18 4865 151 20 29 chr9 70390041 70390922 -47471705 + L1PA15 LINE L1 5083 5915 -444 2113 137 3 0 chr9 70390922 70391221 -47471406 + AluJb SINE Alu 1 300 -12 4865 151 20 29 chr9 70391221 70391644 -47470983 + L1PA15 LINE L1 5915 6340 -19 1982 137 7 3 chr9 70391652 70391944 -47470683 - AluSx SINE Alu -19 293 1 24 32 0 0 chr9 70391947 70391978 -47470649 + AT_rich Low_complexity Low_complexity 1 31 0 647 286 45 0 chr9 70391984 70392204 -47470423 + MIR SINE MIR 25 254 -8 28 61 0 0 chr9 70392272 70392321 -47470306 + AT_rich Low_complexity Low_complexity 1 49 0 236 313 81 19 chr9 70392423 70392583 -47470044 + MIR SINE MIR 23 192 -70 2253 117 0 7 chr9 70393947 70394256 -47468371 + AluSx SINE Alu 1 307 -5 226 273 117 13 chr9 70394687 70394764 -47467863 + L2 LINE L2 3168 3252 -20 1840 166 0 7 chr9 70395548 70395850 -47466777 - AluJb SINE Alu -9 303 4 1852 156 57 21 chr9 70396210 70396411 -47466216 - MER7A DNA MER2_type -2693 345 128 1907 183 39 39 chr9 70396411 70396843 -47465784 + MSTB1 LTR MaLR 1 432 0 1852 156 57 21 chr9 70396843 70396975 -47465652 - MER7A DNA MER2_type -2910 128 2 913 171 28 39 chr9 70397372 70397553 -47465074 - AluJo SINE Alu -133 179 1 242 149 43 0 chr9 70397553 70397600 -47465027 + MER6 DNA MER2_type 814 862 -3 1992 157 3 6 chr9 70400407 70400719 -47461908 + AluJb SINE Alu 1 311 -1 22 0 0 0 chr9 70400972 70400994 -47461633 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 70401076 70401097 -47461530 + AT_rich Low_complexity Low_complexity 1 21 0 359 66 98 0 chr9 70401833 70401894 -47460733 - MER41A LTR ERV1 -88 466 400 450 262 156 0 chr9 70401966 70402088 -47460539 - MIR SINE MIR -116 146 6 2285 100 0 25 chr9 70402462 70402782 -47459845 + AluSx SINE Alu 1 312 0 1033 62 0 8 chr9 70402917 70403045 -47459582 + AluSg/x SINE Alu 171 297 -13 260 265 87 63 chr9 70403208 70403495 -47459132 + L1MC5 LINE L1 7624 7917 -44 605 167 0 0 chr9 70403499 70403601 -47459026 + L1PB4 LINE L1 6054 6155 -1 244 316 90 15 chr9 70403749 70403882 -47458745 - MIR SINE MIR -119 143 1 317 282 58 0 chr9 70404024 70404127 -47458500 + L1ME1 LINE L1 6033 6141 -25 258 263 61 35 chr9 70405181 70405295 -47457332 - MIR SINE MIR -114 148 32 1268 104 104 10 chr9 70407085 70407287 -47455340 + AluSg SINE Alu 27 247 -63 1495 137 18 0 chr9 70407361 70407587 -47455040 + AluJo SINE Alu 71 300 -12 446 282 84 72 chr9 70408540 70408944 -47453683 - L1MC4a LINE L1 -125 5996 5588 2882 185 51 3 chr9 70409561 70410133 -47452494 - L1MB3 LINE L1 -31 6152 5554 23 54 0 0 chr9 70410947 70410984 -47451643 + AT_rich Low_complexity Low_complexity 1 37 0 2095 134 3 0 chr9 70411031 70411329 -47451298 - AluSx SINE Alu -13 299 1 921 246 105 28 chr9 70411700 70412061 -47450566 + L1MC4 LINE L1 7501 7889 -153 1399 213 92 36 chr9 70412175 70412565 -47450062 + L1M4c LINE L1 1097 1508 -4876 981 219 125 84 chr9 70412565 70412934 -47449693 + MSTD LTR MaLR 1 384 -12 2217 180 80 9 chr9 70412938 70413771 -47448856 + L1M4c LINE L1 1511 2500 -3884 2059 141 14 0 chr9 70413777 70414074 -47448553 + AluSx SINE Alu 2 302 -10 2099 136 0 19 chr9 70414085 70414393 -47448234 + AluSx SINE Alu 1 302 -10 589 156 25 33 chr9 70414433 70414555 -47448072 + MER21A LTR ERV1 75 195 -736 353 106 0 0 chr9 70414552 70414599 -47448028 + Charlie3 DNA MER1_type 2656 2702 -8 * 2079 166 37 6 chr9 70414599 70414948 -47447679 + MER21A LTR ERV1 554 913 -18 318 252 27 82 chr9 70414974 70415003 -47447624 + L1M4c LINE L1 2534 2563 -3819 2471 88 0 3 chr9 70415003 70415311 -47447316 + AluSc SINE Alu 1 307 -2 318 252 27 82 chr9 70415311 70415428 -47447199 + L1M4c LINE L1 2563 2672 -3710 * 3538 204 62 75 chr9 70415410 70415605 -47447022 + L1M4c LINE L1 2899 3095 -3287 2343 94 3 0 chr9 70415605 70415902 -47446725 - AluSq SINE Alu -15 298 1 3538 204 62 75 chr9 70415902 70416225 -47446402 + L1M4c LINE L1 3095 3420 -2962 2298 84 3 26 chr9 70416225 70416533 -47446094 + AluY SINE Alu 1 301 -10 3538 204 62 75 chr9 70416533 70416556 -47446071 + L1M4c LINE L1 3420 3442 -2940 200 57 0 29 chr9 70416556 70416591 -47446036 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 3538 204 62 75 chr9 70416591 70416610 -47446017 + L1M4c LINE L1 3442 3460 -2922 2108 116 32 29 chr9 70416610 70416921 -47445706 + AluSx SINE Alu 1 312 0 3538 204 62 75 chr9 70416921 70417658 -47444969 + L1M4c LINE L1 3460 4183 -2199 3202 225 27 34 chr9 70420520 70421569 -47441058 - L1MCa LINE L1 -5058 987 6 2251 85 0 42 chr9 70421916 70422223 -47440404 + AluY SINE Alu 1 294 -17 2282 99 7 0 chr9 70425094 70425387 -47437240 + AluSc SINE Alu 1 295 -14 183 156 0 0 chr9 70425387 70425419 -47437208 + GA-rich Low_complexity Low_complexity 1 32 0 225 241 29 78 chr9 70425885 70426066 -47436561 - L2 LINE L2 -728 2586 2426 2164 203 79 15 chr9 70426931 70427385 -47435242 + MLT1D LTR MaLR 22 504 -1 306 310 264 5 chr9 70427848 70428045 -47434582 - MIR SINE MIR -6 256 9 181 316 13 38 chr9 70428647 70428726 -47433901 + MIR SINE MIR 23 99 -109 1327 231 55 42 chr9 70428729 70429131 -47433496 - MLT1C LTR MaLR -2 465 59 316 263 161 0 chr9 70429366 70429484 -47433143 + MIR3 SINE MIR 7 143 -65 296 248 99 50 chr9 70429503 70429664 -47432963 + L1ME3A LINE L1 5221 5389 -757 553 286 141 18 chr9 70429678 70429961 -47432666 + L1ME3A LINE L1 5447 5764 -406 432 226 36 0 chr9 70430100 70430284 -47432343 + L1ME3A LINE L1 5950 6170 0 315 256 41 25 chr9 70431032 70431153 -47431474 + (TCCA)n Simple_repeat Simple_repeat 1 123 0 * 478 303 0 43 chr9 70431087 70431275 -47431352 + (CCCA)n Simple_repeat Simple_repeat 1 180 0 * 490 280 12 6 chr9 70431169 70431337 -47431290 + (TCCA)n Simple_repeat Simple_repeat 3 171 0 764 141 7 0 chr9 70431348 70431497 -47431130 + (TCCA)n Simple_repeat Simple_repeat 1 150 0 290 362 135 9 chr9 70431576 70431910 -47430717 - L2 LINE L2 -117 3196 2821 259 285 11 28 chr9 70432030 70432209 -47430418 + G-rich Low_complexity Low_complexity 2 177 0 263 135 0 0 chr9 70432218 70432255 -47430372 - Alu SINE Alu -264 37 1 430 324 112 0 chr9 70432260 70432430 -47430197 - L2 LINE L2 -534 2780 2592 2026 103 4 0 chr9 70433142 70433454 -47429173 + AluSx SINE Alu 12 324 0 249 206 0 44 chr9 70433682 70433750 -47428877 + C-rich Low_complexity Low_complexity 6 70 0 288 262 12 36 chr9 70434260 70434344 -47428283 - MIR3 SINE MIR 0 208 127 187 281 53 0 chr9 70435757 70435814 -47426813 - MIR SINE MIR -63 145 86 209 265 24 48 chr9 70436145 70436228 -47426399 + MIR3 SINE MIR 81 161 -47 261 226 16 0 chr9 70437935 70437997 -47424630 - L1ME2 LINE L1 -9 6155 6093 2416 219 41 27 chr9 70438005 70438326 -47424301 - L1MC3 LINE L1 -1619 6166 5851 2072 114 0 0 chr9 70438326 70438616 -47424011 + AluSx SINE Alu 1 290 -22 2416 219 41 27 chr9 70438616 70438953 -47423674 - L1MC3 LINE L1 -1934 5851 5499 1039 169 30 16 chr9 70439123 70439408 -47423219 + THE1C LTR MaLR 1 375 0 1539 139 4 38 chr9 70439507 70439774 -47422853 - AluJb SINE Alu -17 295 38 1450 135 104 171 chr9 70439774 70440254 -47422373 + MER83 LTR ERV1 1 448 0 2320 197 14 39 chr9 70440255 70440686 -47421941 + MER83-int LTR ERV1 13 432 -4448 464 300 23 3 chr9 70440706 70440891 -47421736 - L1ME2 LINE L1 -9 6155 5969 203 146 24 0 chr9 70440893 70440934 -47421693 + A-rich Low_complexity Low_complexity 3 44 0 2233 235 58 23 chr9 70440938 70440971 -47421656 - L1ME2 LINE L1 -184 5982 5952 2217 100 0 0 chr9 70440971 70441270 -47421357 - AluSg SINE Alu -11 299 1 2233 235 58 23 chr9 70441270 70441615 -47421012 - L1ME2 LINE L1 -214 5952 5621 1630 178 10 13 chr9 70441615 70441738 -47420889 + AluJo SINE Alu 1 123 -189 189 0 0 0 chr9 70441738 70441759 -47420868 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 1630 178 10 13 chr9 70441759 70441933 -47420694 + AluJo SINE Alu 123 297 -15 2233 235 58 23 chr9 70441933 70442276 -47420351 - L1ME2 LINE L1 -545 5621 5233 470 249 129 42 chr9 70442277 70442627 -47420000 + L1MEc LINE L1 1120 1440 -4944 758 157 8 22 chr9 70442633 70442767 -47419860 + AluJb SINE Alu 2 133 -179 362 343 65 44 chr9 70442779 70442852 -47419775 + L1MEc LINE L1 1598 1668 -4895 1966 105 61 0 chr9 70442852 70442975 -47419652 + AluSx SINE Alu 1 115 -197 582 86 0 0 chr9 70442975 70443056 -47419571 + (CA)n Simple_repeat Simple_repeat 2 82 0 1966 105 61 0 chr9 70443056 70443226 -47419401 + AluSx SINE Alu 115 312 0 362 343 65 44 chr9 70443226 70443400 -47419227 + L1MEc LINE L1 1668 1850 -4713 9575 196 33 48 chr9 70443427 70444603 -47418024 + L1M1 LINE L1 12 1204 -6361 1689 147 0 32 chr9 70444603 70444888 -47417739 + AluSx SINE Alu 1 276 -36 9575 196 33 48 chr9 70444888 70445744 -47416883 + L1M1 LINE L1 1204 2071 -5494 2101 94 11 0 chr9 70445744 70446066 -47416561 + AluY SINE Alu 1 325 0 1472 178 0 0 chr9 70446068 70446315 -47416312 + AluSx SINE Alu 40 286 -26 9575 196 33 48 chr9 70446315 70447488 -47415139 + L1M1 LINE L1 2072 3261 -4304 2110 112 0 0 chr9 70447488 70447783 -47414844 + AluSx SINE Alu 16 310 -2 9575 196 33 48 chr9 70447783 70448051 -47414576 + L1M1 LINE L1 3261 3531 -4034 1690 144 33 0 chr9 70448051 70448322 -47414305 + AluJb SINE Alu 1 280 -32 9575 196 33 48 chr9 70448322 70448911 -47413716 + L1M1 LINE L1 3531 5107 -2458 1349 200 0 48 chr9 70448919 70449214 -47413413 + AluJo SINE Alu 10 290 -22 1971 119 150 42 chr9 70449480 70449824 -47412803 + MSTA LTR MaLR 1 393 -35 2076 125 3 3 chr9 70449824 70450136 -47412491 - AluSx SINE Alu 0 312 1 1971 119 150 42 chr9 70450136 70450177 -47412450 + MSTA LTR MaLR 393 428 0 845 148 0 7 chr9 70450361 70450496 -47412131 - AluJo SINE Alu -178 134 1 1279 141 10 10 chr9 70451071 70451270 -47411357 + MLT1B LTR MaLR 192 390 0 367 188 11 118 chr9 70451270 70451305 -47411322 - L1M4 LINE L1 -1624 4522 4485 2310 84 3 6 chr9 70451305 70451616 -47411011 - AluSg SINE Alu 0 310 1 367 188 11 118 chr9 70451616 70451738 -47410889 - L1M4 LINE L1 -1661 4485 4384 2150 90 7 0 chr9 70451738 70452040 -47410587 - AluSc SINE Alu 0 304 1 367 188 11 118 chr9 70452040 70452066 -47410561 - L1M4 LINE L1 -1762 4384 4357 289 236 171 0 chr9 70452072 70452195 -47410432 - L1MC3 LINE L1 0 7785 7642 * 1022 259 163 86 chr9 70452179 70452303 -47410324 - L1M3d LINE L1 -4881 1010 897 1531 151 3 86 chr9 70452303 70452640 -47409987 - AluJb SINE Alu -1 311 3 1022 259 163 86 chr9 70452640 70452729 -47409898 - L1M3d LINE L1 -4994 897 816 2192 98 3 0 chr9 70452729 70453026 -47409601 - AluSq SINE Alu -15 298 1 1681 156 46 3 chr9 70453027 70453310 -47409317 - AluJo SINE Alu -17 295 1 1022 259 163 86 chr9 70453310 70453988 -47408639 - L1M3d LINE L1 -5075 816 38 2246 95 3 0 chr9 70453988 70454284 -47408343 - AluSg SINE Alu -12 298 2 1022 259 163 86 chr9 70454284 70454326 -47408301 - L1M3d LINE L1 -5853 38 1 715 194 21 21 chr9 70454333 70454477 -47408150 - L1MC3 LINE L1 -924 6861 6718 1678 210 119 80 chr9 70454495 70454884 -47407743 - HAL1 LINE L1 -790 1717 1345 2239 78 0 3 chr9 70454884 70455178 -47407449 - AluY SINE Alu -18 293 1 1678 210 119 80 chr9 70455178 70455669 -47406958 - HAL1 LINE L1 -1162 1345 802 310 277 79 10 chr9 70455838 70455939 -47406688 + MER77 LTR ERV1 102 209 -396 1397 248 90 18 chr9 70455984 70456383 -47406244 + MER77 LTR ERV1 172 599 -6 471 258 180 9 chr9 70456522 70456739 -47405888 - HAL1 LINE L1 -2155 352 99 1208 289 44 16 chr9 70456754 70457204 -47405423 + LTR16B LTR ERVL 1 463 -1 229 200 125 25 chr9 70457996 70458076 -47404551 + MER77 LTR ERV1 53 140 -465 794 250 199 11 chr9 70458221 70458493 -47404134 + MER77 LTR ERV1 277 599 -6 382 273 212 17 chr9 70458675 70458968 -47403659 + L1MC4 LINE L1 6690 7039 -1003 723 252 95 27 chr9 70460399 70460722 -47401905 + MLT1C LTR MaLR 13 467 0 1694 118 95 0 chr9 70460822 70461084 -47401543 - AluSq SINE Alu -20 293 7 339 263 12 0 chr9 70461196 70461276 -47401351 + L1MCb LINE L1 1089 1169 -4876 1022 90 0 0 chr9 70461279 70461412 -47401215 + AluSq SINE Alu 3 135 -178 43785 31 23 1 chr9 70461412 70467460 -47395167 + L1PA2 LINE L1 1 6181 0 1105 118 0 12 chr9 70467463 70467660 -47394967 + AluSq SINE Alu 126 320 0 1579 167 11 4 chr9 70467687 70468003 -47394624 + AluJo SINE Alu 1 318 0 391 191 45 18 chr9 70468035 70468145 -47394482 + L1MCb LINE L1 1554 1666 -4898 * 466 243 45 69 chr9 70468141 70468388 -47394239 + L1MEd LINE L1 1011 1251 -4868 2073 87 3 72 chr9 70469039 70469374 -47393253 + AluSx SINE Alu 1 312 0 1348 269 43 45 chr9 70471000 70471531 -47391096 + ERVL LTR ERVL 3472 4001 -1763 1673 183 17 0 chr9 70471559 70471860 -47390767 + AluJo SINE Alu 1 306 -6 1671 287 7 7 chr9 70471887 70472330 -47390297 + ERVL LTR ERVL 4116 4558 -1206 332 217 0 14 chr9 70472605 70472674 -47389953 + Ricksha DNA DNA 279 346 -2900 479 313 144 34 chr9 70472674 70473000 -47389627 + MLT2F LTR ERVL 1 362 -301 603 276 54 9 chr9 70473241 70473462 -47389165 - L1ME LINE L1 -582 5582 5352 1891 194 27 56 chr9 70473510 70473808 -47388819 - MLT1C LTR MaLR -1 466 185 7444 43 4 30 chr9 70473808 70475147 -47387480 - SVA Other Other -799 1386 239 1891 194 27 56 chr9 70475147 70475327 -47387300 - MLT1C LTR MaLR -282 185 1 1515 188 7 13 chr9 70475433 70475731 -47386896 + AluJo SINE Alu 1 296 -16 211 111 22 22 chr9 70476313 70476358 -47386269 + (TA)n Simple_repeat Simple_repeat 2 46 0 279 0 0 0 chr9 70476362 70476393 -47386234 + (CA)n Simple_repeat Simple_repeat 2 32 0 4313 204 78 24 chr9 70476655 70477107 -47385520 - L1MD2 LINE L1 -21 6732 6306 2141 112 3 7 chr9 70477107 70477416 -47385211 - AluSq SINE Alu 0 308 1 4313 204 78 24 chr9 70477416 70478160 -47384467 - L1MD2 LINE L1 -447 6306 5471 938 208 72 76 chr9 70478184 70478410 -47384217 + MER31-int LTR ERV1 1020 1245 -5086 2277 97 3 47 chr9 70478410 70478731 -47383896 - AluSp SINE Alu -6 307 1 938 208 72 76 chr9 70478731 70478926 -47383701 + MER31-int LTR ERV1 1245 2979 -3352 873 231 53 30 chr9 70478955 70479254 -47383373 + MER31-int LTR ERV1 1454 1759 -3177 309 219 47 94 chr9 70479448 70479640 -47382987 + MER31-int LTR ERV1 2183 2365 -2571 22 35 0 0 chr9 70479659 70479688 -47382939 + AT_rich Low_complexity Low_complexity 1 29 0 713 149 0 19 chr9 70479688 70479795 -47382832 + FLAM_C SINE Alu 21 125 -18 2432 202 108 40 chr9 70479822 70480564 -47382063 + MER31-int LTR ERV1 2608 3399 -1537 288 191 63 0 chr9 70480564 70480627 -47382000 - MSTC LTR MaLR -361 67 1 787 244 30 41 chr9 70480639 70480775 -47381852 - L1MD2 LINE L1 -1592 4948 4815 1880 156 3 0 chr9 70480775 70481064 -47381563 - AluJb SINE Alu -22 290 1 787 244 30 41 chr9 70481064 70481193 -47381434 - L1MD2 LINE L1 -1725 4815 4686 1960 105 45 3 chr9 70481850 70482136 -47380491 - AluSq SINE Alu -15 298 1 5239 229 112 26 chr9 70482178 70482517 -47380110 - L1MD2 LINE L1 -1939 4601 4293 2406 74 0 29 chr9 70482517 70482826 -47379801 - AluSg SINE Alu -8 302 3 5239 229 112 26 chr9 70482826 70482976 -47379651 - L1MD2 LINE L1 -2247 4293 4157 2269 106 0 6 chr9 70482976 70483287 -47379340 - AluSq SINE Alu -4 309 1 5239 229 112 26 chr9 70483287 70483568 -47379059 - L1MD2 LINE L1 -2383 4157 3902 1693 138 0 15 chr9 70483568 70483837 -47378790 + AluSx SINE Alu 1 265 -47 5239 229 112 26 chr9 70483837 70484920 -47377707 - L1MD2 LINE L1 -2638 3902 2914 2161 108 7 0 chr9 70484920 70485206 -47377421 - AluSx SINE Alu -23 289 2 5239 229 112 26 chr9 70485206 70485247 -47377380 - L1MD2 LINE L1 -3626 2914 2878 2349 158 58 22 chr9 70485247 70485658 -47376969 + MSTB LTR MaLR 1 426 0 5239 229 112 26 chr9 70485658 70485839 -47376788 - L1MD2 LINE L1 -3662 2878 2254 467 194 212 35 chr9 70485867 70486042 -47376585 - MER6 DNA MER2_type 0 865 -65 2167 194 87 6 chr9 70486053 70486557 -47376070 - L1MD2 LINE L1 -4358 2182 1638 3018 202 49 10 chr9 70486595 70487238 -47375389 - L1MD2 LINE L1 -5773 767 18 2086 133 20 0 chr9 70487262 70487563 -47375064 - AluSx SINE Alu -5 307 1 639 229 8 23 chr9 70487564 70487695 -47374932 - AluJo/FLAM SINE Alu -182 130 2 2163 111 14 0 chr9 70488356 70488645 -47373982 - AluSx SINE Alu -19 293 1 2198 101 0 33 chr9 70492772 70493079 -47369548 - AluY SINE Alu -14 297 1 616 221 233 0 chr9 70493640 70493803 -47368824 - AluJo SINE Alu -102 210 10 2046 135 7 3 chr9 70493919 70494223 -47368404 + AluSx SINE Alu 6 310 -2 279 136 0 0 chr9 70494235 70494294 -47368333 + (CAGGA)n Simple_repeat Simple_repeat 2 60 0 2060 195 49 16 chr9 70494586 70495038 -47367589 + L1MB7 LINE L1 5654 6120 -64 1641 170 69 0 chr9 70495394 70495682 -47366945 + AluJb SINE Alu 1 308 -4 298 226 206 14 chr9 70495985 70496131 -47366496 + L1ME LINE L1 5616 5789 -332 2058 116 27 10 chr9 70496273 70496566 -47366061 + AluSx SINE Alu 1 298 -14 223 290 103 0 chr9 70498142 70498249 -47364378 + MIR SINE MIR 118 235 -27 232 244 0 0 chr9 70499356 70499401 -47363226 - L1ME4a LINE L1 -103 6018 5974 2189 132 10 0 chr9 70499488 70499798 -47362829 + AluSq SINE Alu 1 313 0 200 256 0 0 chr9 70500750 70500789 -47361838 - MER91 DNA MER1_type -24 116 78 968 227 32 19 chr9 70500905 70501121 -47361506 + MER20 DNA MER1_type 1 219 0 303 282 169 66 chr9 70502670 70502787 -47359840 - MIR SINE MIR 0 262 158 1599 141 12 0 chr9 70502787 70503036 -47359591 + L1MA3 LINE L1 6054 6305 0 303 282 169 66 chr9 70503036 70503131 -47359496 - MIR SINE MIR -104 158 28 2018 105 26 52 chr9 70503187 70503493 -47359134 - AluSq SINE Alu -15 298 1 181 377 13 0 chr9 70504211 70504288 -47358339 + L2 LINE L2 2944 3021 -251 228 221 59 0 chr9 70505097 70505165 -47357462 + L2 LINE L2 3009 3080 -233 1878 138 21 10 chr9 70505314 70505605 -47357022 + AluSq SINE Alu 1 294 -19 497 183 87 0 chr9 70506418 70506522 -47356105 + MER20 DNA MER1_type 99 211 -8 219 303 79 22 chr9 70506609 70506698 -47355929 + MIR3 SINE MIR 114 207 -1 2210 108 3 0 chr9 70507377 70507672 -47354955 + AluSx SINE Alu 1 296 -16 2771 231 54 8 chr9 70507788 70508030 -47354597 + L1MD2 LINE L1 5644 5873 -486 2185 117 3 3 chr9 70508030 70508330 -47354297 + AluSx SINE Alu 1 300 -12 2771 231 54 8 chr9 70508330 70508753 -47353874 + L1MD2 LINE L1 5873 6340 -19 1962 137 7 3 chr9 70508761 70509053 -47353574 - AluSx SINE Alu -19 293 1 24 32 0 0 chr9 70509056 70509087 -47353540 + AT_rich Low_complexity Low_complexity 1 31 0 716 290 45 0 chr9 70509089 70509313 -47353314 + MIR SINE MIR 21 254 -8 28 61 0 0 chr9 70509381 70509430 -47353197 + AT_rich Low_complexity Low_complexity 1 49 0 294 333 77 19 chr9 70509532 70509739 -47352888 + MIR SINE MIR 23 241 -21 2234 117 0 7 chr9 70511056 70511365 -47351262 + AluSx SINE Alu 1 307 -5 252 273 117 13 chr9 70511796 70511873 -47350754 + L2 LINE L2 3168 3252 -20 1818 166 0 7 chr9 70512657 70512959 -47349668 - AluJb SINE Alu -9 303 4 1857 156 57 21 chr9 70513319 70513520 -47349107 - MER7A DNA MER2_type -2693 345 128 2046 183 37 37 chr9 70513520 70513952 -47348675 + MSTB1 LTR MaLR 1 432 0 1857 156 57 21 chr9 70513952 70514084 -47348543 - MER7A DNA MER2_type -2910 128 2 902 171 28 39 chr9 70514481 70514662 -47347965 - AluJo SINE Alu -133 179 1 245 149 43 0 chr9 70514662 70514709 -47347918 + MER6 DNA MER2_type 814 862 -3 1977 157 3 6 chr9 70517516 70517828 -47344799 + AluJb SINE Alu 1 311 -1 22 0 0 0 chr9 70518081 70518103 -47344524 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 70518185 70518206 -47344421 + AT_rich Low_complexity Low_complexity 1 21 0 362 66 98 0 chr9 70518942 70519003 -47343624 - MER41B LTR ERV1 -88 547 481 491 262 156 0 chr9 70519075 70519197 -47343430 - MIR SINE MIR -116 146 6 2285 109 0 3 chr9 70519571 70519884 -47342743 + AluSx SINE Alu 1 312 0 1025 62 0 8 chr9 70520025 70520153 -47342474 + AluSg/x SINE Alu 171 297 -13 280 265 87 63 chr9 70520316 70520603 -47342024 + L1MC5 LINE L1 7624 7917 -44 633 167 0 0 chr9 70520607 70520709 -47341918 + L1PB4 LINE L1 6054 6155 -1 285 303 84 39 chr9 70520835 70520990 -47341637 - MIR SINE MIR -100 162 1 315 282 58 0 chr9 70521132 70521235 -47341392 + L1ME1 LINE L1 6033 6141 -25 289 263 61 35 chr9 70522289 70522403 -47340224 - MIR SINE MIR -114 148 32 1256 104 104 10 chr9 70524193 70524395 -47338232 + AluSg SINE Alu 27 247 -63 1485 137 18 0 chr9 70524469 70524695 -47337932 + AluJo SINE Alu 71 300 -12 468 282 84 72 chr9 70525648 70526052 -47336575 - L1MC4a LINE L1 -125 5996 5588 2901 185 51 3 chr9 70526669 70527241 -47335386 - L1MB3 LINE L1 -31 6152 5554 23 54 0 0 chr9 70528055 70528092 -47334535 + AT_rich Low_complexity Low_complexity 1 37 0 2092 134 3 0 chr9 70528139 70528437 -47334190 - AluSx SINE Alu -13 299 1 1102 233 135 39 chr9 70528808 70529298 -47333329 + L1MC4 LINE L1 7501 8037 -5 1291 134 6 0 chr9 70529301 70529480 -47333147 - AluSg/x SINE Alu -7 305 126 1695 201 3 0 chr9 70529498 70529792 -47332835 + AluJb SINE Alu 7 301 -11 327 164 0 0 chr9 70529803 70529864 -47332763 + (TA)n Simple_repeat Simple_repeat 1 61 0 1355 184 148 0 chr9 70529864 70530120 -47332507 - AluJb SINE Alu -8 294 1 372 234 13 0 chr9 70530178 70530255 -47332372 + MER58 DNA MER1_type 2 79 -136 2084 109 10 16 chr9 70530364 70530667 -47331960 + AluSx SINE Alu 3 303 -9 35 0 0 0 chr9 70530773 70530808 -47331819 + AT_rich Low_complexity Low_complexity 1 35 0 1772 176 13 0 chr9 70530902 70531203 -47331424 + AluJb SINE Alu 1 305 -7 424 255 75 43 chr9 70531273 70531461 -47331166 + L1MC5 LINE L1 7706 7899 -62 1767 127 58 0 chr9 70531508 70531768 -47330859 + AluSg1 SINE Alu 1 275 -34 180 0 0 0 chr9 70531771 70531791 -47330836 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 342 267 151 14 chr9 70532937 70533083 -47329544 + L1MC4a LINE L1 5721 5886 -1922 2139 124 3 0 chr9 70533089 70533388 -47329239 + AluSx SINE Alu 1 300 -12 1922 212 164 5 chr9 70533864 70534491 -47328136 + L1MC4a LINE L1 7082 7808 0 22 0 0 0 chr9 70534691 70534713 -47327914 + AT_rich Low_complexity Low_complexity 1 22 0 295 280 73 2 chr9 70535479 70535598 -47327029 + MIR SINE MIR 44 169 -62 2223 103 7 0 chr9 70535930 70536231 -47326396 + AluSx SINE Alu 1 303 -9 4023 186 64 20 chr9 70536532 70537693 -47324934 - L1MB7 LINE L1 -5 6179 4958 312 296 209 0 chr9 70538808 70538923 -47323704 + MER5A DNA MER1_type 49 187 -2 1687 161 0 68 chr9 70539020 70539342 -47323285 - AluJb SINE Alu -12 300 1 215 309 34 67 chr9 70539866 70540015 -47322612 + L2 LINE L2 2384 2527 -787 366 243 84 12 chr9 70540171 70540337 -47322290 + L1ME LINE L1 5645 5823 -298 1844 159 0 7 chr9 70541299 70541600 -47321027 - AluJo SINE Alu -13 299 1 3255 117 36 0 chr9 70542188 70542683 -47319944 - LTR10D LTR ERV1 0 513 1 400 200 45 0 chr9 70542817 70542927 -47319700 + HAL1 LINE L1 2284 2398 -109 594 235 91 27 chr9 70542995 70543393 -47319234 + MLT1G LTR MaLR 11 584 -11 2183 119 7 10 chr9 70543712 70544014 -47318613 - AluSg SINE Alu -9 301 1 2274 103 7 13 chr9 70546473 70546783 -47315844 + AluSx SINE Alu 3 310 -2 498 83 56 0 chr9 70547762 70547834 -47314793 + Alu SINE Alu 222 297 -13 290 338 0 0 chr9 70549133 70549213 -47313414 + MIR3 SINE MIR 93 172 -36 789 191 13 6 chr9 70549653 70549810 -47312817 + MLT1F1 LTR MaLR 1 158 -409 729 298 11 36 chr9 70549835 70550198 -47312429 + MLT1D-int LTR MaLR 248 601 -770 1198 239 48 3 chr9 70550273 70550587 -47312040 + MER58B DNA MER1_type 2 329 -12 954 175 6 12 chr9 70550663 70550829 -47311798 + FRAM SINE Alu 2 166 0 455 264 50 98 chr9 70551177 70551556 -47311071 + MLT1D-int LTR MaLR 964 1324 -47 896 213 50 16 chr9 70551649 70551907 -47310720 - L1MD3 LINE L1 0 7995 7729 1256 227 113 28 chr9 70552039 70552498 -47310129 + MLT1D LTR MaLR 8 505 0 2313 96 0 0 chr9 70553006 70553297 -47309330 - AluSx SINE Alu -21 291 1 321 271 21 36 chr9 70553365 70553505 -47309122 + L1MC5 LINE L1 7721 7858 -103 310 202 48 0 chr9 70553710 70553794 -47308833 - L1ME LINE L1 -467 5654 5567 1620 167 98 4 chr9 70555109 70555384 -47307243 + AluJo SINE Alu 1 301 -11 245 196 155 10 chr9 70555686 70555783 -47306844 - L2 LINE L2 -1265 2049 1939 233 184 0 0 chr9 70556081 70556119 -47306508 + Alu SINE Alu 1 38 -264 262 227 45 15 chr9 70557081 70557147 -47305480 + MIR3 SINE MIR 123 190 -18 5705 113 19 24 chr9 70558309 70559176 -47303451 + L1PA15 LINE L1 5098 5968 -197 1946 152 26 0 chr9 70559176 70559479 -47303148 + AluJb SINE Alu 1 311 -1 5705 113 19 24 chr9 70559479 70559548 -47303079 + L1PA15 LINE L1 5968 6036 -129 2501 93 0 0 chr9 70559548 70559861 -47302766 + AluSq SINE Alu 1 313 0 5705 113 19 24 chr9 70559861 70559999 -47302628 + L1PA15 LINE L1 6036 6165 0 279 278 153 17 chr9 70560020 70560196 -47302431 + L2 LINE L2 2329 2528 -786 473 145 26 0 chr9 70560331 70560407 -47302220 - MER58 DNA MER1_type 0 2420 2343 346 272 25 0 chr9 70560415 70560496 -47302131 - MER58 DNA MER1_type -2337 83 1 196 304 114 38 chr9 70563220 70563299 -47299328 + MIR3 SINE MIR 87 171 -37 913 90 7 35 chr9 70563676 70563821 -47298806 + FLAM_C SINE Alu 1 141 -2 1533 180 17 34 chr9 70563965 70564259 -47298368 - AluJb SINE Alu -19 293 5 317 243 193 0 chr9 70564585 70564725 -47297902 + LTR33A LTR ERVL 356 522 -1 2367 98 0 7 chr9 70564756 70565062 -47297565 + AluSc SINE Alu 1 304 -5 208 298 105 65 chr9 70565920 70566044 -47296583 + MIR SINE MIR 21 149 -59 217 298 50 57 chr9 70567154 70567295 -47295332 + L2 LINE L2 2570 2709 -605 2448 89 0 3 chr9 70567596 70567910 -47294717 - AluSq SINE Alu 0 313 1 321 316 140 26 chr9 70568136 70568364 -47294263 + L1ME LINE L1 5577 5830 -332 456 255 32 32 chr9 70569339 70569368 -47293259 - MIR SINE MIR -30 232 204 1861 123 23 0 chr9 70569368 70569629 -47292998 - AluSx SINE Alu -14 298 32 456 255 32 32 chr9 70569629 70569756 -47292871 - MIR SINE MIR -57 205 76 207 0 0 0 chr9 70570512 70570535 -47292092 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 311 258 145 8 chr9 70571856 70571980 -47290647 - MIR SINE MIR -116 146 6 342 319 138 59 chr9 70572810 70573064 -47289563 - L1M2 LINE L1 -5896 953 680 309 246 77 33 chr9 70573386 70573569 -47289058 - MER113 DNA MER1_type? -248 273 83 661 253 13 0 chr9 70573590 70573744 -47288883 - MIR SINE MIR -87 175 20 278 226 267 75 chr9 70574061 70574207 -47288420 + MER5A DNA MER1_type 13 186 -3 4771 143 58 19 chr9 70574259 70575144 -47287483 - MER49 LTR ERV1 0 923 5 722 236 84 5 chr9 70575397 70575588 -47287039 + MIR SINE MIR 30 235 -27 934 162 38 5 chr9 70575841 70576026 -47286601 - L1MB3 LINE L1 0 6183 5993 2231 87 13 3 chr9 70576186 70576485 -47286142 - AluSq SINE Alu -11 302 1 1246 146 112 68 chr9 70576526 70576727 -47285900 - AluJb SINE Alu 0 312 92 189 0 0 0 chr9 70576727 70576748 -47285879 + (TG)n Simple_repeat Simple_repeat 2 22 0 1246 146 112 68 chr9 70576748 70576841 -47285786 - AluJb SINE Alu -220 92 5 220 344 23 38 chr9 70577165 70577296 -47285331 - L2 LINE L2 -826 2488 2360 2273 112 3 3 chr9 70577680 70577993 -47284634 - AluSq SINE Alu 0 313 1 2445 77 0 6 chr9 70578171 70578483 -47284144 - AluY SINE Alu -1 310 1 1456 191 54 17 chr9 70578683 70578977 -47283650 + AluJo SINE Alu 1 305 -7 31 0 0 0 chr9 70579016 70579047 -47283580 + AT_rich Low_complexity Low_complexity 1 31 0 1974 146 7 0 chr9 70579531 70579826 -47282801 + AluSx SINE Alu 1 297 -15 209 186 47 0 chr9 70579862 70579905 -47282722 + T-rich Low_complexity Low_complexity 5 49 0 430 188 0 0 chr9 70580722 70580802 -47281825 - AluJ/FRAM SINE Alu -3 309 230 398 257 29 22 chr9 70580895 70581031 -47281596 - MARNA DNA Mariner -74 512 376 228 263 0 0 chr9 70581062 70581119 -47281508 - MARNA DNA Mariner -312 274 218 2129 121 0 3 chr9 70581125 70581422 -47281205 - AluSc SINE Alu -13 296 1 23 0 0 0 chr9 70581430 70581453 -47281174 + AT_rich Low_complexity Low_complexity 1 23 0 2114 137 7 0 chr9 70581601 70581908 -47280719 + AluSx SINE Alu 1 309 -3 1538 112 128 8 chr9 70581908 70582192 -47280435 + AluSg1 SINE Alu 1 314 0 205 353 24 0 chr9 70582329 70582414 -47280213 + MIR3 SINE MIR 92 178 -30 2416 203 22 18 chr9 70582462 70583009 -47279618 - L1M4 LINE L1 -1068 5078 4530 977 193 93 19 chr9 70583034 70583293 -47279334 - L1MC4 LINE L1 -375 7667 7390 874 236 30 76 chr9 70583306 70583607 -47279020 - HAL1 LINE L1 -2133 374 88 565 217 31 88 chr9 70583619 70583845 -47278782 + L1ME3 LINE L1 5942 6154 -8 250 338 39 0 chr9 70583843 70583920 -47278707 - HAL1 LINE L1 -2418 89 10 * 2362 100 0 0 chr9 70584039 70584340 -47278287 + AluSq SINE Alu 1 301 -12 753 167 45 117 chr9 70584967 70585033 -47277594 - MLT1J LTR MaLR -2 565 496 1895 159 3 3 chr9 70585033 70585329 -47277298 + AluJo SINE Alu 1 296 -16 753 167 45 117 chr9 70585329 70585341 -47277286 - MLT1J LTR MaLR -71 496 485 2001 165 11 34 chr9 70585341 70585692 -47276935 + MER2 DNA MER2_type 1 343 -1 753 167 45 117 chr9 70585692 70585834 -47276793 - MLT1J LTR MaLR -82 485 360 9324 53 4 2 chr9 70587516 70588585 -47274042 + MER11C LTR ERVK 1 1071 0 807 238 152 29 chr9 70589063 70589340 -47273287 - MLT1J LTR MaLR -197 314 4 371 277 80 0 chr9 70589833 70589945 -47272682 - L1MC/D LINE L1 -2144 5664 5544 270 298 58 47 chr9 70590179 70590350 -47272277 - MIR3 SINE MIR -13 195 23 1667 173 0 53 chr9 70590667 70590990 -47271637 + AluJo SINE Alu 1 306 -6 205 171 0 0 chr9 70591374 70591409 -47271218 + T-rich Low_complexity Low_complexity 3 37 0 454 151 0 0 chr9 70591413 70591486 -47271141 - L1MB8 LINE L1 -5 6173 6101 2176 84 3 3 chr9 70591530 70591851 -47270776 - AluSx SINE Alu 0 321 1 585 108 0 0 chr9 70591891 70591974 -47270653 + AluSc SINE Alu 2 84 -225 2429 59 7 7 chr9 70591974 70592279 -47270348 + AluY SINE Alu 2 306 -5 1723 78 0 30 chr9 70592280 70592511 -47270116 + AluSc SINE Alu 73 296 -13 315 176 95 27 chr9 70592511 70592585 -47270042 - L1MC/D LINE L1 -678 5443 5365 321 278 94 58 chr9 70592953 70593144 -47269483 - L2 LINE L2 0 3313 3116 713 120 0 56 chr9 70593190 70593298 -47269329 - AluJo SINE Alu -178 134 33 787 345 108 23 chr9 70593387 70594253 -47268374 - L2 LINE L2 -357 2957 2018 192 321 196 36 chr9 70594432 70594544 -47268083 + MIR3 SINE MIR 2 131 -77 1140 248 138 79 chr9 70594708 70594923 -47267704 - L1MDa LINE L1 -4360 2247 2046 1374 152 22 114 chr9 70594923 70595262 -47267365 - AluYb8 SINE Alu 0 310 1 1140 248 138 79 chr9 70595262 70595397 -47267230 - L1MDa LINE L1 -4561 2046 1920 2330 101 3 0 chr9 70595397 70595695 -47266932 - AluSq SINE Alu -14 299 1 1140 248 138 79 chr9 70595695 70596301 -47266326 - L1MDa LINE L1 -4687 1920 1039 530 174 85 27 chr9 70596278 70596402 -47266225 - L1MC/D LINE L1 -423 6099 5968 * 2327 102 0 0 chr9 70596402 70596705 -47265922 - AluSc SINE Alu -6 303 1 530 174 85 27 chr9 70596705 70596728 -47265899 - L1MC/D LINE L1 -554 5968 5948 243 311 39 0 chr9 70596758 70596861 -47265766 + (CATA)n Simple_repeat Simple_repeat 2 108 0 1009 197 21 0 chr9 70596862 70597050 -47265577 - L1ME LINE L1 -461 5705 5514 499 141 28 0 chr9 70597851 70597922 -47264705 - FLAM_C SINE Alu -38 105 33 1396 154 54 108 chr9 70598062 70598212 -47264415 - L1MB3 LINE L1 -1 6182 6025 2133 95 46 0 chr9 70598212 70598497 -47264130 + AluSg SINE Alu 1 298 -12 1396 154 54 108 chr9 70598497 70598643 -47263984 - L1MB3 LINE L1 -158 6025 5909 2035 116 25 3 chr9 70598643 70598928 -47263699 - AluSx SINE Alu -21 291 1 1396 154 54 108 chr9 70598928 70599020 -47263607 - L1MB3 LINE L1 -274 5909 5814 1937 150 7 0 chr9 70599091 70599398 -47263229 + AluSx SINE Alu 1 309 -3 351 0 0 0 chr9 70599471 70599510 -47263117 + (TG)n Simple_repeat Simple_repeat 2 40 0 290 26 26 0 chr9 70599509 70599548 -47263079 + (TA)n Simple_repeat Simple_repeat 1 40 0 * 2910 89 18 5 chr9 70599550 70599932 -47262695 - MLT2A1 LTR ERVL -57 387 1 12578 67 26 3 chr9 70599932 70601521 -47261106 - HERVL-A1 LTR ERVL 0 5654 4030 737 148 0 0 chr9 70601549 70601657 -47260970 - FLAM_C SINE Alu -29 114 7 4788 68 9 13 chr9 70601737 70602373 -47260254 - MER11A LTR ERVK 0 1266 633 3670 43 20 2 chr9 70603323 70603913 -47258714 - MER11A LTR ERVK -763 503 1 2960 143 63 115 chr9 70603914 70604465 -47258162 - L1M4c LINE L1 -4301 2083 1505 1976 116 11 11 chr9 70604465 70604783 -47257844 - AluSp SINE Alu 0 318 1 2960 143 63 115 chr9 70604783 70605233 -47257394 - L1M4c LINE L1 -4879 1505 1231 2121 130 7 3 chr9 70605233 70605532 -47257095 - AluSx SINE Alu -12 300 1 2960 143 63 115 chr9 70605532 70605613 -47257014 - L1M4c LINE L1 -5153 1231 1147 5382 217 94 33 chr9 70605613 70606738 -47255889 + L1MD1 LINE L1 1574 2628 -3912 227 123 0 123 chr9 70606738 70606795 -47255832 + U6 snRNA snRNA 1 50 -57 5382 217 94 33 chr9 70606795 70607209 -47255418 + L1MD1 LINE L1 2628 3015 -3525 668 265 0 0 chr9 70607209 70607341 -47255286 + FLAM_A SINE Alu 1 132 -1 5382 217 94 33 chr9 70607341 70608730 -47253897 + L1MD1 LINE L1 3015 4746 -1794 4576 169 84 6 chr9 70608748 70609698 -47252929 + L1MD1 LINE L1 5619 6636 0 21 36 0 0 chr9 70610277 70610305 -47252322 + AT_rich Low_complexity Low_complexity 1 28 0 215 348 11 11 chr9 70610566 70610658 -47251969 - L2 LINE L2 0 3313 3222 400 342 151 22 chr9 70610885 70611245 -47251382 - L2 LINE L2 -191 3081 2671 1714 125 4 29 chr9 70611253 70611532 -47251095 + AluSq SINE Alu 42 313 0 2333 102 0 3 chr9 70611535 70611838 -47250789 + AluSx SINE Alu 1 302 -10 418 306 8 0 chr9 70615178 70615299 -47247328 + MIR SINE MIR 117 238 -24 2057 108 0 34 chr9 70615627 70615922 -47246705 + AluSp SINE Alu 1 285 -28 731 205 94 133 chr9 70616183 70616651 -47245976 + LTR7 LTR ERV1 1 450 0 306 269 9 65 chr9 70616853 70616961 -47245666 + HERVH LTR ERV1 276 377 -7336 18262 245 39 35 chr9 70617046 70622743 -47239884 + HERVH LTR ERV1 596 6213 -1500 1521 199 21 0 chr9 70622993 70623274 -47239353 - AluJb SINE Alu -25 287 1 2225 116 7 0 chr9 70623593 70623895 -47238732 - AluSx SINE Alu -8 304 1 1042 126 0 7 chr9 70624324 70624475 -47238152 - AluJo SINE Alu -162 150 1 1764 126 4 8 chr9 70625058 70625319 -47237308 - AluSx SINE Alu -12 300 41 25 65 0 0 chr9 70625644 70625690 -47236937 + AT_rich Low_complexity Low_complexity 1 46 0 421 228 135 78 chr9 70626161 70626354 -47236273 - MER112 DNA MER1_type -15 245 42 225 257 108 0 chr9 70626590 70626664 -47235963 + MIR SINE MIR 90 149 -59 191 194 0 0 chr9 70626680 70626716 -47235911 + L2 LINE L2 3263 3298 -15 39932 31 0 1 chr9 70626759 70632918 -47229709 - L1PA3 LINE L1 0 6155 2 358 274 126 43 chr9 70633509 70633648 -47228979 + L1M4 LINE L1 728 854 -5275 2107 132 0 7 chr9 70633648 70633951 -47228676 + AluSq SINE Alu 1 301 -12 358 274 126 43 chr9 70633951 70634378 -47228249 + L1M4 LINE L1 854 1343 -4786 2013 136 0 10 chr9 70634850 70635151 -47227476 + AluSx SINE Alu 5 302 -10 368 247 172 11 chr9 70635413 70635587 -47227040 + MLT1J LTR MaLR 304 505 -6 450 264 187 17 chr9 70636240 70636475 -47226152 + L1M4 LINE L1 2117 2391 -3738 374 244 133 99 chr9 70636707 70636966 -47225661 + L1M4 LINE L1 2661 2935 -3194 2052 102 3 32 chr9 70636966 70637251 -47225376 + AluSc SINE Alu 1 277 -32 374 244 133 99 chr9 70637251 70637323 -47225304 + L1M4 LINE L1 2935 3003 -3126 274 274 64 34 chr9 70637357 70637578 -47225049 + MER46C DNA MER2_type 68 331 -7 530 263 110 54 chr9 70637701 70638127 -47224500 + L1M4 LINE L1 3850 4299 -1830 240 275 17 25 chr9 70638144 70638264 -47224363 + L1M4 LINE L1 4473 4591 -1538 255 294 20 65 chr9 70638555 70638756 -47223871 + L1M4 LINE L1 5005 5196 -933 905 207 163 37 chr9 70638769 70639179 -47223448 - HsTC2 DNA Tc2 0 1898 1261 470 264 16 0 chr9 70639161 70639282 -47223345 - HsTC2 DNA Tc2 -1153 745 623 * 518 258 19 57 chr9 70639345 70639554 -47223073 - HsTC2 DNA Tc2 -1694 204 4 259 284 47 29 chr9 70639572 70639756 -47222871 + L1M4 LINE L1 5227 5413 -748 737 255 133 34 chr9 70640213 70640810 -47221817 + HAL1 LINE L1 94 782 -1725 711 132 28 104 chr9 70640812 70640994 -47221633 + L1MA9 LINE L1 6145 6312 0 4611 176 42 18 chr9 70641050 70642371 -47220256 + L1MB7 LINE L1 4826 6181 -3 281 170 0 0 chr9 70642383 70642436 -47220191 + L1MB7 LINE L1 6119 6171 -13 401 128 105 35 chr9 70642457 70642543 -47220084 - Charlie5 DNA MER1_type -499 2113 2022 483 160 21 0 chr9 70643002 70643096 -47219531 - Charlie5 DNA MER1_type -591 2021 1926 633 273 134 17 chr9 70643282 70643641 -47218986 + HAL1 LINE L1 1756 2156 -351 207 311 33 0 chr9 70643771 70643832 -47218795 + MER91A DNA MER1_type 122 184 -12 1840 147 30 67 chr9 70643908 70644000 -47218627 + MER7A DNA MER2_type 1 95 -2943 1847 173 0 7 chr9 70644000 70644301 -47218326 - AluJb SINE Alu -13 299 1 1840 147 30 67 chr9 70644301 70644569 -47218058 + MER7A DNA MER2_type 95 346 0 922 102 0 0 chr9 70644652 70644770 -47217857 + AluSq/x SINE Alu 1 118 -194 292 348 208 0 chr9 70644772 70644950 -47217677 + L1M4 LINE L1 362 576 -6592 3488 246 44 43 chr9 70645290 70645800 -47216827 + L1M4 LINE L1 1744 2252 -4915 2658 55 0 0 chr9 70645800 70646109 -47216518 + AluY SINE Alu 1 309 -2 3488 246 44 43 chr9 70646109 70647393 -47215234 + L1M4 LINE L1 2252 3220 -3947 556 88 12 0 chr9 70649946 70650026 -47212601 + AluY SINE Alu 4 84 -234 1047 123 27 64 chr9 70650026 70650677 -47211950 + SVA Other Other 464 674 -712 1832 92 0 0 chr9 70650785 70651012 -47211615 + AluSc SINE Alu 73 299 -10 660 274 79 33 chr9 70651474 70651930 -47210697 + L1M4 LINE L1 5509 5985 -1182 2404 76 0 0 chr9 70651990 70652281 -47210346 + AluY SINE Alu 1 291 -20 2385 71 3 3 chr9 70654210 70654505 -47208122 + AluSp SINE Alu 1 295 -18 29 0 0 0 chr9 70657313 70657342 -47205285 + AT_rich Low_complexity Low_complexity 1 29 0 2342 103 3 0 chr9 70657345 70657647 -47204980 + AluSp SINE Alu 1 303 -10 300 197 15 15 chr9 70658373 70658439 -47204188 + L2 LINE L2 3194 3259 -54 258 175 63 32 chr9 70658441 70658504 -47204123 - MER3 DNA MER1_type 0 209 145 1743 146 29 7 chr9 70658511 70658786 -47203841 + AluJb SINE Alu 1 281 -31 198 0 0 0 chr9 70658790 70658812 -47203815 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 2375 96 3 0 chr9 70658973 70659285 -47203342 + AluSp SINE Alu 1 313 0 2542 53 3 0 chr9 70660200 70660499 -47202128 - AluSp SINE Alu -13 300 1 476 292 85 42 chr9 70660817 70661394 -47201233 - L1M3 LINE L1 -367 5816 5213 2317 198 32 62 chr9 70661707 70662338 -47200289 + LTR9 LTR ERV1 1 612 0 312 268 86 91 chr9 70662438 70662636 -47199991 + LTR16C LTR ERVL 73 269 -222 387 208 156 51 chr9 70662806 70663047 -47199580 + MLT1F LTR MaLR 312 593 -2 793 222 0 18 chr9 70663095 70663266 -47199361 - MLT1C LTR MaLR 0 467 300 292 268 24 57 chr9 70663268 70663391 -47199236 - MLT1C LTR MaLR -386 119 1 5443 194 17 102 chr9 70663391 70664890 -47197737 - MLT1C-int LTR MaLR 0 1371 1 1252 217 85 48 chr9 70664890 70665303 -47197324 - MLT1C LTR MaLR 0 467 36 * 2349 179 110 22 chr9 70665298 70665377 -47197250 - MLT2B2 LTR ERVL -10 505 434 2323 93 0 7 chr9 70665377 70665677 -47196950 + AluSx SINE Alu 1 298 -14 2349 179 110 22 chr9 70665677 70666061 -47196566 - MLT2B2 LTR ERVL -81 434 1 396 256 26 8 chr9 70666119 70666236 -47196391 + LTR16C LTR ERVL 366 484 -7 233 275 14 0 chr9 70666242 70666311 -47196316 - L1M3 LINE L1 -1311 4835 4766 3516 171 28 32 chr9 70666312 70667029 -47195598 - L1MD1 LINE L1 -2 6240 5527 308 284 96 23 chr9 70667030 70667311 -47195316 + LTR38B LTR ERV1 267 555 -1 21 0 0 0 chr9 70667930 70667951 -47194676 + AT_rich Low_complexity Low_complexity 1 21 0 186 43 0 0 chr9 70668248 70668271 -47194356 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 436 323 36 5 chr9 70668294 70668489 -47194138 - L2 LINE L2 -1326 1988 1788 1737 145 47 4 chr9 70668798 70669074 -47193553 + AluJo SINE Alu 25 312 0 2455 86 0 0 chr9 70669077 70669378 -47193249 + AluSq SINE Alu 1 301 -12 694 157 130 76 chr9 70669381 70669463 -47193164 + L1MC3 LINE L1 805 881 -6728 1407 171 15 90 chr9 70669463 70669796 -47192831 + AluJb SINE Alu 3 310 -2 694 157 130 76 chr9 70669796 70670029 -47192598 + L1MC3 LINE L1 881 7609 0 949 123 0 0 chr9 70670061 70670183 -47192444 + AluSc SINE Alu 1 122 -187 877 156 0 7 chr9 70670684 70670819 -47191808 + AluJo SINE Alu 1 134 -178 1974 123 152 31 chr9 70671003 70671044 -47191583 - MSTA LTR MaLR 0 428 393 2198 120 3 3 chr9 70671044 70671352 -47191275 + AluSx SINE Alu 1 308 -4 1974 123 152 31 chr9 70671352 70671692 -47190935 - MSTA LTR MaLR -35 393 1 1496 193 3 50 chr9 70671975 70672276 -47190351 - AluJo SINE Alu -16 296 10 7836 178 26 47 chr9 70672284 70672873 -47189754 - L1 LINE L1 -2458 5107 4507 1799 148 33 0 chr9 70672873 70673144 -47189483 - AluJb SINE Alu -32 280 1 7836 178 26 47 chr9 70673144 70673386 -47189241 - L1 LINE L1 -3058 4507 4262 2121 119 20 0 chr9 70673386 70673679 -47188948 - AluSx SINE Alu -13 299 1 7836 178 26 47 chr9 70673679 70674836 -47187791 - L1 LINE L1 -3303 4262 3083 1601 155 4 0 chr9 70674836 70675081 -47187546 - AluSx SINE Alu -27 285 40 7836 178 26 47 chr9 70675081 70675101 -47187526 - L1 LINE L1 -4482 3083 3064 2372 98 0 0 chr9 70675101 70675398 -47187229 - AluY SINE Alu -14 297 1 7836 178 26 47 chr9 70675398 70676261 -47186366 - L1 LINE L1 -4501 3064 2303 1879 133 0 32 chr9 70676261 70676546 -47186081 - AluSx SINE Alu -36 276 1 7836 178 26 47 chr9 70676546 70676915 -47185712 - L1 LINE L1 -5262 2303 1928 394 340 64 40 chr9 70677548 70677845 -47184782 - L2 LINE L2 -8 3264 2961 429 36 0 0 chr9 70677896 70677951 -47184676 + (TG)n Simple_repeat Simple_repeat 1 55 0 378 224 41 88 chr9 70685327 70685474 -47177153 + MIR3 SINE MIR 42 181 -27 380 219 181 49 chr9 70688483 70688688 -47173939 + MIR SINE MIR 31 262 0 491 220 0 0 chr9 70689606 70689706 -47172921 - U13 snRNA snRNA -4 100 1 309 162 0 0 chr9 70690097 70690165 -47172462 + (TG)n Simple_repeat Simple_repeat 2 69 0 829 243 39 0 chr9 70690275 70690456 -47172171 + MIR SINE MIR 67 254 -8 210 37 0 0 chr9 70690672 70690699 -47171928 + (T)n Simple_repeat Simple_repeat 1 27 0 258 295 0 53 chr9 70690980 70691075 -47171552 + MIR SINE MIR 40 129 -79 312 233 17 9 chr9 70691772 70691888 -47170739 + CT-rich Low_complexity Low_complexity 3 119 0 22 56 0 0 chr9 70692669 70692705 -47169922 + AT_rich Low_complexity Low_complexity 1 36 0 236 296 0 0 chr9 70692725 70692806 -47169821 + L1MA9 LINE L1 6194 6274 -38 255 357 67 24 chr9 70693077 70693287 -47169340 - MIR SINE MIR 0 262 44 2067 120 0 3 chr9 70693670 70693971 -47168656 + AluSg SINE Alu 1 300 -10 1071 110 37 0 chr9 70694075 70694238 -47168389 - AluY SINE Alu -6 305 137 21 0 0 0 chr9 70695586 70695607 -47167020 + AT_rich Low_complexity Low_complexity 1 21 0 2124 127 0 9 chr9 70697413 70697728 -47164899 - AluSx SINE Alu 0 312 1 189 79 79 16 chr9 70699110 70699173 -47163454 + (CA)n Simple_repeat Simple_repeat 1 67 0 2102 114 0 3 chr9 70699286 70699584 -47163043 - AluSq SINE Alu -16 297 1 2301 139 26 61 chr9 70700690 70700989 -47161638 - MER65A LTR ERV1 0 445 137 1720 154 0 0 chr9 70700989 70701269 -47161358 + AluJo SINE Alu 1 280 -32 294 29 0 0 chr9 70701269 70701304 -47161323 + (TAAAA)n Simple_repeat Simple_repeat 1 35 0 2301 139 26 61 chr9 70701304 70701464 -47161163 - MER65A LTR ERV1 -306 139 1 4378 224 68 9 chr9 70702401 70703480 -47159147 - L1MC3 LINE L1 -1 7784 6643 194 382 15 0 chr9 70703500 70703568 -47159059 - L2 LINE L2 0 3272 3204 470 276 5 5 chr9 70705021 70705240 -47157387 + (CA)n Simple_repeat Simple_repeat 1 219 0 1258 249 108 3 chr9 70705353 70705714 -47156913 + MER70A LTR ERVL 5 403 -69 2619 221 59 108 chr9 70705763 70706623 -47156004 + L1MDa LINE L1 645 1435 -5105 441 0 0 0 chr9 70706623 70706672 -47155955 + (CA)n Simple_repeat Simple_repeat 2 50 0 2619 221 59 108 chr9 70706672 70706972 -47155655 + L1MDa LINE L1 1435 1748 -4792 1063 87 0 0 chr9 70706972 70707110 -47155517 + AluSq/x SINE Alu 1 138 -174 1167 221 15 4 chr9 70707111 70707373 -47155254 + L1MDa LINE L1 1798 2062 -4478 1929 157 8 40 chr9 70707375 70707726 -47154901 + MER4B LTR ERV1 267 606 -4 234 164 18 36 chr9 70707728 70707783 -47154844 + LTR41 LTR ERVL 116 169 -604 260 260 8 138 chr9 70708099 70708222 -47154405 + LTR41 LTR ERVL 506 612 -161 1215 194 11 28 chr9 70708263 70708546 -47154081 - L1MC3 LINE L1 0 7785 7508 457 157 16 124 chr9 70708549 70708670 -47153957 + MLT1E2 LTR MaLR 24 131 -495 320 273 113 65 chr9 70708675 70708906 -47153721 + L1M4 LINE L1 2 243 -6299 1265 226 91 34 chr9 70709227 70709791 -47152836 + L1M4 LINE L1 816 1872 -4693 892 195 20 15 chr9 70709913 70710113 -47152514 + AluSq SINE Alu 4 204 -109 230 286 79 0 chr9 70710313 70710453 -47152174 + L1MC/D LINE L1 5327 5477 -2331 240 276 35 43 chr9 70710517 70710633 -47151994 + L1MC/D LINE L1 5622 5736 -2072 297 0 0 0 chr9 70710742 70710775 -47151852 + (ATG)n Simple_repeat Simple_repeat 2 34 0 2040 122 0 0 chr9 70710775 70711061 -47151566 - AluSq SINE Alu -27 286 1 304 208 143 0 chr9 70711414 70711491 -47151136 - L2 LINE L2 0 3313 3226 490 250 85 45 chr9 70712088 70712264 -47150363 - MER5A DNA MER1_type 0 189 7 1874 139 3 0 chr9 70712790 70713077 -47149550 + AluSp SINE Alu 5 292 -21 2140 92 7 0 chr9 70713103 70713398 -47149229 + AluSx SINE Alu 1 297 -15 538 93 13 0 chr9 70713402 70713477 -47149150 - L1MC1 LINE L1 -6 6327 6252 2360 179 41 23 chr9 70713481 70713968 -47148659 - L1MC3 LINE L1 -924 6861 6366 293 273 196 21 chr9 70713968 70714162 -47148465 + L2 LINE L2 3084 3311 -2 2118 116 0 3 chr9 70715590 70715891 -47146736 + AluSx SINE Alu 1 300 -12 27 0 0 0 chr9 70716991 70717018 -47145609 + AT_rich Low_complexity Low_complexity 1 27 0 2049 101 3 13 chr9 70718213 70718511 -47144116 + AluSx SINE Alu 1 295 -17 204 196 33 33 chr9 70718513 70718605 -47144022 + (TATAA)n Simple_repeat Simple_repeat 3 94 0 281 296 55 123 chr9 70718608 70718861 -47143766 + L2 LINE L2 2993 3228 -44 1689 157 25 0 chr9 70719226 70719512 -47143115 + AluJo SINE Alu 1 293 -19 209 350 73 7 chr9 70719581 70719718 -47142909 + L2 LINE L2 2897 3042 -230 1684 283 108 16 chr9 70719891 70720519 -47142108 - L2 LINE L2 -1895 1419 734 605 239 131 0 chr9 70720621 70720797 -47141830 - MER105 DNA DNA -2 202 4 2236 100 0 0 chr9 70720967 70721266 -47141361 + AluSg SINE Alu 1 299 -11 21 71 0 0 chr9 70721568 70721610 -47141017 + AT_rich Low_complexity Low_complexity 1 42 0 352 311 108 52 chr9 70721731 70721943 -47140684 + L3 LINE CR1 1160 1383 -194 2167 115 0 0 chr9 70722179 70722491 -47140136 + AluSx SINE Alu 1 312 0 1894 125 3 30 chr9 70722538 70722843 -47139784 + AluSx SINE Alu 1 297 -15 1747 166 0 17 chr9 70724161 70724505 -47138122 + AluSx SINE Alu 1 339 0 272 193 34 11 chr9 70724505 70724593 -47138034 + (TA)n Simple_repeat Simple_repeat 1 90 0 284 219 0 0 chr9 70724693 70724766 -47137861 + (TA)n Simple_repeat Simple_repeat 2 74 0 31 76 0 0 chr9 70724886 70724952 -47137675 + AT_rich Low_complexity Low_complexity 1 66 0 22 0 0 0 chr9 70724965 70724987 -47137640 + AT_rich Low_complexity Low_complexity 1 22 0 3192 144 35 127 chr9 70727079 70727279 -47135348 + L1MB8 LINE L1 5401 5618 -560 2154 116 0 6 chr9 70727279 70727590 -47135037 + AluSp SINE Alu 1 309 -4 3192 144 35 127 chr9 70727590 70728179 -47134448 + L1MB8 LINE L1 5618 6259 81 1572 211 3 0 chr9 70728179 70728464 -47134163 + AluJb SINE Alu 1 286 -26 243 79 0 0 chr9 70728464 70728502 -47134125 + (TTAA)n Simple_repeat Simple_repeat 3 40 0 3192 144 35 127 chr9 70728502 70728561 -47134066 + L1MB8 LINE L1 6110 6173 -5 1663 185 0 0 chr9 70728971 70729269 -47133358 + AluJb SINE Alu 1 298 -14 259 296 96 70 chr9 70729271 70729294 -47133333 + MIR SINE MIR 12 33 -229 2181 88 7 0 chr9 70729294 70729588 -47133039 + AluY SINE Alu 1 296 -15 259 296 96 70 chr9 70729588 70729763 -47132864 + MIR SINE MIR 33 215 -47 2089 136 0 0 chr9 70730330 70730639 -47131988 + AluY SINE Alu 1 309 -2 182 326 0 0 chr9 70731213 70731259 -47131368 - MIR SINE MIR -142 66 21 1068 125 5 50 chr9 70731769 70731969 -47130658 + MER20 DNA MER1_type 29 219 0 293 289 25 74 chr9 70732002 70732082 -47130545 - MIR SINE MIR -74 134 60 2336 99 0 0 chr9 70732082 70732384 -47130243 + AluSc SINE Alu 1 302 -7 293 289 25 74 chr9 70732384 70732424 -47130203 - MIR SINE MIR -148 60 20 1264 198 16 28 chr9 70732699 70732952 -47129675 + AluJo SINE Alu 43 292 -20 180 0 0 0 chr9 70733340 70733360 -47129267 + (CAAT)n Simple_repeat Simple_repeat 4 23 0 830 268 106 28 chr9 70733374 70733693 -47128934 + MER77 LTR ERV1 295 607 -6 1502 229 67 36 chr9 70733694 70734083 -47128544 + MLT1E LTR MaLR 193 593 0 323 333 49 82 chr9 70734098 70734722 -47127905 + L2 LINE L2 2669 3272 0 233 329 61 12 chr9 70739108 70739190 -47123437 - L2 LINE L2 -37 3235 3150 2379 91 0 3 chr9 70740117 70740424 -47122203 + AluSg1 SINE Alu 1 306 -3 976 289 57 23 chr9 70740426 70740956 -47121671 + L1MC4a LINE L1 4507 5054 -1092 4040 183 103 133 chr9 70741135 70741496 -47121131 + L1MC4a LINE L1 5254 5625 -2183 1985 92 60 4 chr9 70741496 70741777 -47120850 - AluSx SINE Alu -15 297 1 4040 183 103 133 chr9 70741777 70742936 -47119691 + L1MC4a LINE L1 5625 6723 -1085 2045 136 3 10 chr9 70742936 70743246 -47119381 + AluSx SINE Alu 1 308 -4 4040 183 103 133 chr9 70743246 70743361 -47119266 + L1MC4a LINE L1 6723 6840 -968 1930 157 0 4 chr9 70743361 70743670 -47118957 - AluJb SINE Alu 0 310 3 1542 167 0 19 chr9 70743737 70744001 -47118626 + AluJo SINE Alu 41 299 -13 2693 224 63 19 chr9 70744003 70745468 -47117159 + L1ME1 LINE L1 4437 6099 -67 388 292 19 7 chr9 70745379 70745533 -47117094 + L1MA10 LINE L1 6170 6325 -9 * 2344 92 0 16 chr9 70745659 70745974 -47116653 + AluSx SINE Alu 1 310 -2 31 65 0 13 chr9 70745983 70746015 -47116612 + AT_rich Low_complexity Low_complexity 1 32 -44 1853 142 7 34 chr9 70746015 70746310 -47116317 + AluSx SINE Alu 1 287 -25 31 65 0 13 chr9 70746310 70746354 -47116273 + AT_rich Low_complexity Low_complexity 32 76 0 1310 212 137 33 chr9 70746383 70746873 -47115754 + L1MC4 LINE L1 7120 7660 -382 211 265 0 20 chr9 70747875 70747924 -47114703 + MER5B DNA MER1_type 2 49 -129 1977 114 26 0 chr9 70747951 70748223 -47114404 - AluSg SINE Alu -30 280 2 392 244 54 71 chr9 70748225 70748362 -47114265 - MER5B DNA MER1_type -38 151 6 2827 217 58 31 chr9 70748646 70748938 -47113689 - MER82 DNA MER2_type -1 652 369 1872 146 0 56 chr9 70748938 70749127 -47113500 - AluSx SINE Alu -7 305 107 198 0 0 0 chr9 70749127 70749149 -47113478 + (TTTAA)n Simple_repeat Simple_repeat 2 23 0 2316 70 0 36 chr9 70749149 70749451 -47113176 - AluY SINE Alu -20 291 1 1872 146 0 56 chr9 70749451 70749583 -47113044 - AluSx SINE Alu -203 109 1 2827 217 58 31 chr9 70749583 70749925 -47112702 - MER82 DNA MER2_type -284 369 1 225 0 0 0 chr9 70749977 70750002 -47112625 + (CA)n Simple_repeat Simple_repeat 1 25 0 219 260 0 0 chr9 70750257 70750307 -47112320 + L3 LINE CR1 1526 1575 -2 2227 100 31 0 chr9 70751716 70752007 -47110620 - AluSx SINE Alu -12 300 1 2063 127 0 10 chr9 70752224 70752516 -47110111 + AluSx SINE Alu 4 292 -20 2142 116 3 3 chr9 70752619 70752921 -47109706 + AluSx SINE Alu 1 302 -10 2262 102 3 13 chr9 70753289 70753592 -47109035 - AluSx SINE Alu -12 300 1 1520 73 0 0 chr9 70753607 70753798 -47108829 - AluY SINE Alu -2 309 119 966 92 0 15 chr9 70753801 70753931 -47108696 + AluSc SINE Alu 1 128 -181 3804 186 67 45 chr9 70757203 70757485 -47105142 + L1MB3 LINE L1 4467 4741 -1442 2345 90 10 6 chr9 70757485 70757796 -47104831 + AluSx SINE Alu 1 312 0 3804 186 67 45 chr9 70757796 70758184 -47104443 + L1MB3 LINE L1 4741 5119 -1064 1740 73 65 0 chr9 70758184 70758444 -47104183 + L1MA5A LINE L1 6016 6292 -5 3804 186 67 45 chr9 70758444 70759137 -47103490 + L1MB3 LINE L1 5119 5867 -316 1667 160 4 4 chr9 70759137 70759406 -47103221 + AluJb SINE Alu 39 307 -5 3804 186 67 45 chr9 70759406 70759646 -47102981 + L1MB3 LINE L1 5867 6100 -83 198 358 73 24 chr9 70761071 70761194 -47101433 + L2 LINE L2 2925 3053 -219 560 233 47 8 chr9 70761242 70761371 -47101256 + MER21B LTR ERV1 36 169 -694 990 272 83 21 chr9 70761423 70761809 -47100818 + MER21B LTR ERV1 328 737 -126 814 274 6 62 chr9 70762030 70762355 -47100272 + L1MDa LINE L1 12 318 -6222 2227 235 96 66 chr9 70763023 70763388 -47099239 + L1M4 LINE L1 57 410 -6236 2321 190 38 75 chr9 70763388 70763628 -47098999 + LTR9 LTR ERV1 1 249 -363 2107 102 41 14 chr9 70763628 70763922 -47098705 - AluSx SINE Alu -8 304 3 2321 190 38 75 chr9 70763922 70764317 -47098310 + LTR9 LTR ERV1 249 612 0 2227 235 96 66 chr9 70764317 70765087 -47097540 + L1M4 LINE L1 410 1155 -5491 2174 104 0 17 chr9 70765087 70765386 -47097241 + AluSg SINE Alu 1 294 -16 2227 235 96 66 chr9 70765386 70766215 -47096412 + L1M4 LINE L1 1155 2474 -4172 1409 80 0 6 chr9 70766215 70766391 -47096236 + AluSp SINE Alu 39 213 -100 393 22 0 0 chr9 70766395 70766441 -47096186 + (CA)n Simple_repeat Simple_repeat 1 46 0 569 143 10 0 chr9 70766442 70766540 -47096087 + L1M4 LINE L1 2597 2695 -3951 189 0 0 0 chr9 70766542 70766563 -47096064 + (T)n Simple_repeat Simple_repeat 1 21 0 5644 188 31 30 chr9 70766617 70766844 -47095783 + L1M2 LINE L1 1550 1775 -5073 2342 89 0 0 chr9 70766844 70767137 -47095490 - AluSc SINE Alu -16 293 1 5644 188 31 30 chr9 70767137 70767425 -47095202 + L1M2 LINE L1 1775 2061 -4787 699 197 0 0 chr9 70767425 70767542 -47095085 - FLAM_C SINE Alu -16 117 1 5644 188 31 30 chr9 70767542 70768565 -47094062 + L1M2 LINE L1 2061 3092 -3756 242 125 0 0 chr9 70768590 70768622 -47094005 + Alu SINE Alu 6 37 -262 469 92 0 0 chr9 70768622 70768687 -47093940 - Alu SINE Alu -12 299 235 901 120 0 0 chr9 70768689 70768822 -47093805 + AluSg/x SINE Alu 173 305 -7 7575 201 43 17 chr9 70768824 70769901 -47092726 + L1M2 LINE L1 3094 4244 -2604 2088 121 0 13 chr9 70769901 70770214 -47092413 + AluSx SINE Alu 1 309 -3 7575 201 43 17 chr9 70770214 70771045 -47091582 + L1M2 LINE L1 4244 5052 -1796 458 181 0 0 chr9 70771060 70771143 -47091484 + L1M2 LINE L1 5213 5295 -1553 2100 182 32 49 chr9 70771143 70771609 -47091018 + MER74A LTR ERVL 89 546 -12 1404 218 7 24 chr9 70771625 70771923 -47090704 - AluJo SINE Alu -16 296 4 3898 105 87 83 chr9 70772274 70772767 -47089860 - Tigger4(Zombi) DNA MER2_type 0 2731 2241 2170 121 7 0 chr9 70772767 70773073 -47089554 + AluSq SINE Alu 1 308 -5 3898 105 87 83 chr9 70773073 70773216 -47089411 - Tigger4(Zombi) DNA MER2_type -490 2241 2100 2218 113 0 0 chr9 70773216 70773508 -47089119 + AluSx SINE Alu 1 292 -20 3898 105 87 83 chr9 70773508 70773641 -47088986 - Tigger4(Zombi) DNA MER2_type -631 2100 1958 1105 138 95 0 chr9 70773640 70773829 -47088798 - Tigger4(Zombi) DNA MER2_type -2524 207 1 * 185 277 99 79 chr9 70774454 70774481 -47088146 - MIR3 SINE MIR -14 194 169 2443 70 7 0 chr9 70774481 70774783 -47087844 - AluY SINE Alu -6 305 2 185 277 99 79 chr9 70774783 70774856 -47087771 - MIR3 SINE MIR -39 169 92 2205 122 0 0 chr9 70774972 70775276 -47087351 + AluSx SINE Alu 1 304 -8 673 280 69 46 chr9 70775369 70775673 -47086954 + L2 LINE L2 3002 3312 -1 214 231 46 31 chr9 70775746 70775811 -47086816 - L2 LINE L2 -4 3309 3244 277 307 141 12 chr9 70775852 70776015 -47086612 + L2 LINE L2 3113 3296 -17 327 210 80 0 chr9 70776018 70776118 -47086509 - L1ME1 LINE L1 -1 6165 6058 237 211 24 73 chr9 70776221 70776344 -47086283 + L1MEc LINE L1 1576 1692 -4704 832 136 0 8 chr9 70776350 70776475 -47086152 + FLAM_C SINE Alu 1 124 -9 1988 163 0 3 chr9 70776533 70776846 -47085781 + AluJb SINE Alu 1 312 0 1983 265 81 45 chr9 70776851 70777042 -47085585 + L1MC4 LINE L1 6457 6640 -1402 1981 152 30 0 chr9 70777042 70777378 -47085249 - MER7A DNA MER2_type -1 345 2 1983 265 81 45 chr9 70777378 70777427 -47085200 + L1MC4 LINE L1 6640 6686 -1356 198 103 0 0 chr9 70777427 70777456 -47085171 + (TG)n Simple_repeat Simple_repeat 2 30 0 1983 265 81 45 chr9 70777456 70778256 -47084371 + L1MC4 LINE L1 6686 7535 -507 944 195 75 30 chr9 70778308 70778508 -47084119 - AluJo SINE Alu -20 292 84 451 155 29 48 chr9 70778519 70778622 -47084005 + L1MC4 LINE L1 7554 7654 -388 252 86 0 0 chr9 70778623 70778658 -47083969 + (TTTTA)n Simple_repeat Simple_repeat 5 39 0 580 134 0 0 chr9 70778658 70778740 -47083887 - AluSg/x SINE Alu -32 278 197 428 289 5 69 chr9 70778751 70778901 -47083726 + L1MC4 LINE L1 7688 7846 -196 2237 95 0 7 chr9 70778901 70779242 -47083385 + AluSx SINE Alu 1 339 0 2024 135 0 0 chr9 70779242 70779567 -47083060 + AluSx SINE Alu 1 325 0 428 289 5 69 chr9 70779567 70779631 -47082996 + L1MC4 LINE L1 7844 7891 -151 2365 74 6 10 chr9 70779676 70779987 -47082640 + AluY SINE Alu 1 310 -1 316 297 0 9 chr9 70779987 70780098 -47082529 + L1MEc LINE L1 1748 1857 -4358 1092 195 20 10 chr9 70780116 70780316 -47082311 - AluJo SINE Alu -26 286 85 419 306 51 30 chr9 70780337 70780572 -47082055 + L1MEc LINE L1 1906 2145 -4251 7606 168 40 69 chr9 70780572 70781269 -47081358 + L1M4c LINE L1 16 732 -5652 191 35 0 35 chr9 70781269 70781298 -47081329 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 7606 168 40 69 chr9 70781298 70781434 -47081193 + L1M4c LINE L1 732 870 -5514 2357 109 3 0 chr9 70781434 70781746 -47080881 + AluSp SINE Alu 1 313 0 7606 168 40 69 chr9 70781746 70782139 -47080488 + L1M4c LINE L1 870 1273 -5111 2136 130 7 3 chr9 70782139 70782438 -47080189 + AluSx SINE Alu 1 300 -12 7606 168 40 69 chr9 70782438 70782888 -47079739 + L1M4c LINE L1 1273 1518 -4866 1977 116 11 11 chr9 70782888 70783221 -47079406 + AluSp SINE Alu 1 333 0 7606 168 40 69 chr9 70783221 70783772 -47078855 + L1M4c LINE L1 1518 2083 -4301 3407 44 20 2 chr9 70783773 70784363 -47078264 + MER11A LTR ERVK 1 503 -763 4471 66 9 13 chr9 70785313 70785949 -47076678 + MER11A LTR ERVK 633 1266 0 697 148 0 0 chr9 70786029 70786137 -47076490 + FLAM_C SINE Alu 7 114 -29 11744 67 26 3 chr9 70786165 70787754 -47074873 + HERVL-A1 LTR ERVL 4030 5654 0 1852 98 25 7 chr9 70787754 70788028 -47074599 + MLT2A1 LTR ERVL 1 279 -165 2314 97 0 0 chr9 70788130 70788428 -47074199 - AluSc SINE Alu -11 298 1 28 0 0 0 chr9 70788434 70788462 -47074165 + AT_rich Low_complexity Low_complexity 1 28 0 371 287 10 41 chr9 70788687 70788898 -47073729 - L1ME LINE L1 -589 5532 5316 222 37 0 0 chr9 70788898 70788925 -47073702 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 2085 118 0 0 chr9 70788928 70789207 -47073420 - AluSg SINE Alu -31 279 1 371 287 10 41 chr9 70789207 70789278 -47073349 - L1ME LINE L1 -807 5314 5255 2423 94 0 0 chr9 70789377 70789684 -47072943 + AluSq SINE Alu 1 307 -6 794 181 7 13 chr9 70790391 70790540 -47072087 - MSTD LTR MaLR 0 396 249 486 214 0 10 chr9 70790586 70790689 -47071938 - MSTD LTR MaLR -326 102 1 2075 130 0 7 chr9 70790983 70791276 -47071351 + AluSx SINE Alu 1 291 -21 243 165 304 38 chr9 70791389 70791443 -47071184 + L1M4 LINE L1 4304 4342 -1804 2238 121 0 0 chr9 70791443 70791740 -47070887 + AluSg SINE Alu 1 297 -13 243 165 304 38 chr9 70791740 70791843 -47070784 + L1M4 LINE L1 4342 4503 -1643 411 244 101 0 chr9 70791848 70792008 -47070619 + L1M4 LINE L1 4773 4953 -1193 2128 114 0 29 chr9 70792095 70792402 -47070225 + AluSx SINE Alu 1 298 -14 4717 203 33 7 chr9 70792670 70794253 -47068374 - L1MD1 LINE L1 -1 6241 4612 2200 113 0 7 chr9 70794253 70794554 -47068073 + AluSq SINE Alu 2 300 -13 4717 203 33 7 chr9 70794554 70794603 -47068024 - L1MD1 LINE L1 -1630 4612 4566 2150 191 59 60 chr9 70794599 70794736 -47067891 - L1M4 LINE L1 -816 5330 5194 * 1903 161 20 0 chr9 70794736 70795034 -47067593 - AluJb SINE Alu -3 309 6 2150 191 59 60 chr9 70795034 70795105 -47067522 - L1M4 LINE L1 -952 5194 5124 1544 142 0 145 chr9 70795105 70795436 -47067191 - AluJb SINE Alu -23 289 7 2150 191 59 60 chr9 70795436 70795937 -47066690 - L1M4 LINE L1 -1022 5124 4621 2042 128 7 0 chr9 70796005 70796286 -47066341 + AluSx SINE Alu 1 283 -29 23 0 0 0 chr9 70796533 70796556 -47066071 + AT_rich Low_complexity Low_complexity 1 23 0 36 0 0 0 chr9 70796695 70796731 -47065896 + AT_rich Low_complexity Low_complexity 1 36 0 227 258 135 11 chr9 70796838 70796927 -47065700 + MIR SINE MIR 52 151 -57 3054 188 85 25 chr9 70797264 70797579 -47065048 + MER44D DNA MER2_type 1 295 -2192 1338 114 86 0 chr9 70797579 70797681 -47064946 + MER30 DNA MER1_type 3 95 -135 360 0 0 0 chr9 70797681 70797721 -47064906 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 1338 114 86 0 chr9 70797721 70797828 -47064799 + MER30 DNA MER1_type 95 230 0 3054 188 85 25 chr9 70797828 70798203 -47064424 + MER44D DNA MER2_type 295 605 0 1502 108 0 16 chr9 70798205 70798454 -47064173 - MER6 DNA MER2_type 0 865 621 311 286 9 29 chr9 70798485 70798590 -47064037 + L1ME3 LINE L1 6058 6160 -2 1047 169 38 97 chr9 70798613 70798811 -47063816 + L1MC5 LINE L1 7335 7500 -461 1794 175 13 0 chr9 70798811 70799114 -47063513 + AluJb SINE Alu 1 307 -5 1047 169 38 97 chr9 70799114 70799306 -47063321 + L1MC5 LINE L1 7500 7702 -259 1699 241 113 63 chr9 70799318 70799450 -47063177 + L1M4 LINE L1 3635 3759 -2387 2457 86 0 0 chr9 70799450 70799763 -47062864 + AluSp SINE Alu 1 313 0 1699 241 113 63 chr9 70799763 70799902 -47062725 + L1M4 LINE L1 3759 3890 -2256 2260 88 10 10 chr9 70799902 70800197 -47062430 + AluY SINE Alu 1 295 -16 1699 241 113 63 chr9 70800197 70800993 -47061634 + L1M4 LINE L1 3890 4774 -1372 2274 102 0 10 chr9 70800993 70801297 -47061330 - AluSx SINE Alu -11 301 1 1699 241 113 63 chr9 70801297 70801444 -47061183 + L1M4 LINE L1 4774 4912 -1234 1111 187 128 17 chr9 70801545 70801997 -47060630 - L1M3 LINE L1 -720 5460 4968 4100 177 27 7 chr9 70802035 70802803 -47059824 - L1PA13 LINE L1 -6003 784 1 547 183 40 8 chr9 70802808 70802934 -47059693 + L1MB8 LINE L1 6044 6173 -5 2184 113 7 0 chr9 70802936 70803228 -47059399 + AluSx SINE Alu 1 294 -18 285 154 0 0 chr9 70804110 70804230 -47058397 + FLAM_A SINE Alu 81 200 0 810 196 82 5 chr9 70804233 70804427 -47058200 - MER4C LTR ERV1 -222 243 35 1559 360 141 11 chr9 70804428 70804895 -47057732 - MER1A DNA MER1_type -1 528 1 282 102 0 20 chr9 70804895 70804938 -47057689 - MER4A LTR ERV1 -622 42 1 2600 160 135 46 chr9 70805396 70805539 -47057088 - LTR8A LTR ERV1 0 727 598 1600 103 12 21 chr9 70805539 70805781 -47056846 - AluSg/x SINE Alu -2 310 71 2600 160 135 46 chr9 70805781 70806305 -47056322 - LTR8A LTR ERV1 -129 598 1 323 223 203 61 chr9 70806330 70806441 -47056186 + MIR SINE MIR 1 95 -167 2483 59 16 0 chr9 70806441 70806747 -47055880 + AluY SINE Alu 1 311 0 323 223 203 61 chr9 70806747 70806832 -47055795 + MIR SINE MIR 95 225 -37 2307 107 139 0 chr9 70806853 70807227 -47055400 + MSTA LTR MaLR 1 426 -2 198 0 0 0 chr9 70807371 70807393 -47055234 + (TTA)n Simple_repeat Simple_repeat 3 24 0 23108 25 0 0 chr9 70807393 70810894 -47051733 - L1PA3 LINE L1 -18 6137 2638 1026 24 0 0 chr9 70810894 70811019 -47051608 + L1PA3 LINE L1 2511 2635 -3511 721 207 0 15 chr9 70811119 70811254 -47051373 + FLAM_A SINE Alu 1 133 0 372 271 79 62 chr9 70811951 70812128 -47050499 - MIR SINE MIR -50 212 33 537 154 48 139 chr9 70812328 70812395 -47050232 + MER20 DNA MER1_type 29 101 -118 1758 179 27 10 chr9 70812395 70812696 -47049931 + AluJo SINE Alu 1 306 -6 537 154 48 139 chr9 70812696 70812836 -47049791 + MER20 DNA MER1_type 101 217 -2 2255 87 0 17 chr9 70813070 70813370 -47049257 + AluSg SINE Alu 1 295 -15 253 204 34 34 chr9 70815036 70815124 -47047503 - L1MC4 LINE L1 -1314 6728 6641 278 226 71 0 chr9 70815823 70815907 -47046720 + L1ME3A LINE L1 6065 6154 -16 198 314 38 94 chr9 70817099 70817258 -47045369 - L3b LINE CR1 -73 1510 1361 1938 79 114 25 chr9 70817334 70817614 -47045013 - AluSg SINE Alu -5 305 1 2134 128 0 7 chr9 70817962 70818259 -47044368 - AluSq SINE Alu -18 295 1 627 251 154 66 chr9 70818443 70819250 -47043377 - L1MC5 LINE L1 -178 7783 6906 2016 148 0 0 chr9 70819251 70819558 -47043069 - AluSx SINE Alu 0 307 1 204 363 12 0 chr9 70821646 70821726 -47040901 - MIR SINE MIR -23 239 159 21 36 0 0 chr9 70823038 70823066 -47039561 + AT_rich Low_complexity Low_complexity 1 28 0 225 163 47 0 chr9 70823066 70823109 -47039518 - LTR33A LTR ERVL -8 515 471 2364 104 0 0 chr9 70823114 70823413 -47039214 - AluSx SINE Alu -13 299 1 389 278 37 9 chr9 70824573 70824681 -47037946 + MER81 DNA DNA 3 113 -1 221 302 35 0 chr9 70825305 70825391 -47037236 - MIR SINE MIR -109 153 65 1394 162 147 8 chr9 70827144 70827409 -47035218 - AluJo SINE Alu 0 302 1 2345 95 0 0 chr9 70828470 70828775 -47033852 - AluSg SINE Alu -5 305 1 1597 126 35 12 chr9 70828942 70829197 -47033430 - AluSx SINE Alu -8 304 44 2234 108 0 16 chr9 70829350 70829656 -47032971 + AluSx SINE Alu 1 301 -11 2297 98 0 0 chr9 70829658 70829945 -47032682 + AluSg SINE Alu 1 287 -23 396 0 0 0 chr9 70832023 70832067 -47030560 + (CAT)n Simple_repeat Simple_repeat 3 46 0 424 276 186 30 chr9 70832267 70832810 -47029817 + L1ME4a LINE L1 5491 6118 -3 352 263 34 42 chr9 70834034 70834152 -47028475 - MIR3 SINE MIR -80 128 12 1859 142 23 16 chr9 70835724 70836033 -47026594 - AluSx SINE Alu -1 311 1 474 278 67 29 chr9 70836805 70837014 -47025613 - L3 LINE CR1 -79 1498 1282 24 32 0 0 chr9 70839149 70839180 -47023447 + AT_rich Low_complexity Low_complexity 1 31 0 2430 77 0 0 chr9 70840513 70840813 -47021814 - AluY SINE Alu -11 300 1 746 248 198 11 chr9 70841436 70841876 -47020751 - L1ME3A LINE L1 0 6170 5649 644 209 82 8 chr9 70842982 70843116 -47019511 - FRAM SINE Alu -32 144 1 187 317 48 48 chr9 70843388 70843492 -47019135 - L2 LINE L2 -253 3060 2957 229 302 38 9 chr9 70843718 70843824 -47018803 + Charlie8 DNA MER1_type 92 200 -2217 2323 104 0 0 chr9 70844068 70844367 -47018260 - AluSx SINE Alu -13 299 1 943 236 172 21 chr9 70844439 70844905 -47017722 + L1MC4 LINE L1 6695 7230 -812 907 176 32 77 chr9 70844913 70845134 -47017493 + AluJb SINE Alu 86 296 -16 1556 144 18 7 chr9 70845171 70845456 -47017171 + MER47A DNA MER2_type 79 366 0 228 226 16 0 chr9 70847156 70847218 -47015409 + MER58 DNA MER1_type 2358 2420 0 21 0 0 0 chr9 70847278 70847299 -47015328 + AT_rich Low_complexity Low_complexity 1 21 0 368 257 105 58 chr9 70847395 70847566 -47015061 - MIR SINE MIR -26 236 58 243 345 34 14 chr9 70850024 70850172 -47012455 + MIR3 SINE MIR 3 153 -55 201 323 0 0 chr9 70850574 70850636 -47011991 - MIR3 SINE MIR -48 160 99 21 0 0 0 chr9 70851047 70851068 -47011559 + AT_rich Low_complexity Low_complexity 1 21 0 2169 113 0 0 chr9 70851913 70852197 -47010430 + AluSc SINE Alu 2 285 -24 544 205 13 20 chr9 70852877 70853028 -47009599 - L1MD3 LINE L1 -6 7989 7840 1346 255 70 26 chr9 70854144 70854599 -47008028 + L1MC4a LINE L1 5380 5854 -1954 2340 113 3 0 chr9 70854628 70854938 -47007689 + AluSp SINE Alu 1 311 -2 2319 126 23 50 chr9 70854975 70855412 -47007215 + MSTB1 LTR MaLR 8 432 0 444 281 31 95 chr9 70855446 70855598 -47007029 + L1MC4a LINE L1 5918 6041 -1767 1050 57 43 0 chr9 70855598 70855739 -47006888 + L1PA4 LINE L1 6006 6152 -3 444 281 31 95 chr9 70855739 70855903 -47006724 + L1MC4a LINE L1 6041 6214 -1594 282 292 198 11 chr9 70856050 70856448 -47006179 + L1MC4 LINE L1 6414 6819 -989 339 270 87 22 chr9 70856572 70856757 -47005870 + L1MC5 LINE L1 7020 7216 -745 350 309 29 0 chr9 70856804 70856940 -47005687 + L1MC4 LINE L1 7335 7474 -568 2195 114 0 0 chr9 70857478 70857768 -47004859 - AluSx SINE Alu -22 290 1 323 245 109 48 chr9 70857800 70857947 -47004680 - L1MC5 LINE L1 -60 7901 7746 2058 135 0 0 chr9 70860090 70860372 -47002255 - AluJb SINE Alu -9 303 22 203 352 16 71 chr9 70860527 70860709 -47001918 - MIR SINE MIR -56 206 35 285 205 13 51 chr9 70861093 70861171 -47001456 + L1MC/D LINE L1 5749 5823 -1985 354 270 33 1 chr9 70861436 70861544 -47001083 - MER5A DNA MER1_type -51 130 17 1776 147 4 14 chr9 70861839 70862118 -47000509 - AluJo SINE Alu -30 282 7 1185 123 0 17 chr9 70864183 70864362 -46998265 - AluSg/x SINE Alu -5 307 132 21 57 0 0 chr9 70866126 70866161 -46996466 + AT_rich Low_complexity Low_complexity 1 35 0 2344 100 0 3 chr9 70868399 70868710 -46993917 - AluSg SINE Alu 0 310 1 28 0 0 0 chr9 70868712 70868740 -46993887 + AT_rich Low_complexity Low_complexity 1 28 0 2332 205 93 16 chr9 70870578 70871226 -46991401 + L1ME1 LINE L1 5473 6333 -1 755 211 0 0 chr9 70871413 70871546 -46991081 - FLAM_A SINE Alu 0 133 1 2246 120 0 0 chr9 70871560 70871860 -46990767 - AluSx SINE Alu -12 300 1 387 106 0 0 chr9 70872098 70872164 -46990463 + (TCC)n Simple_repeat Simple_repeat 1 66 0 2257 75 0 4 chr9 70873367 70873648 -46988979 - AluSg SINE Alu -30 280 1 407 306 191 0 chr9 70875420 70875629 -46986998 - MLT1I LTR MaLR 0 409 161 323 115 0 0 chr9 70875845 70875897 -46986730 - L1MB7 LINE L1 -18 6166 6115 1859 140 30 0 chr9 70875902 70876167 -46986460 + AluSx SINE Alu 3 275 -37 195 42 0 0 chr9 70876172 70876196 -46986431 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 4380 159 50 57 chr9 70876547 70877294 -46985333 + L1MB5 LINE L1 4584 5335 -839 1705 175 7 17 chr9 70877294 70877585 -46985042 + AluJo SINE Alu 10 297 -15 4380 159 50 57 chr9 70877585 70878400 -46984227 + L1MB5 LINE L1 5335 6152 -22 288 0 0 0 chr9 70879351 70879383 -46983244 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 2312 71 0 4 chr9 70879390 70879671 -46982956 - AluSg SINE Alu -30 280 1 23 0 0 0 chr9 70879672 70879695 -46982932 + AT_rich Low_complexity Low_complexity 1 23 0 214 203 14 14 chr9 70879771 70879845 -46982782 + CT-rich Low_complexity Low_complexity 1 74 0 895 180 6 49 chr9 70880365 70880548 -46982079 - AluJo SINE Alu -16 296 122 852 226 10 34 chr9 70880564 70880689 -46981938 - MER58A DNA MER1_type -2196 224 104 3819 104 7 20 chr9 70880689 70881244 -46981383 - LTR14 LTR ERVK 0 548 1 852 226 10 34 chr9 70881244 70881322 -46981305 - MER58A DNA MER1_type -2316 104 26 1965 144 3 22 chr9 70882315 70882628 -46979999 + AluJo SINE Alu 1 307 -5 3465 132 75 19 chr9 70882691 70882894 -46979733 + Tigger3b DNA MER2_type 1 191 -2837 1959 114 16 23 chr9 70882894 70883201 -46979426 + AluSx SINE Alu 1 305 -7 3465 132 75 19 chr9 70883201 70883647 -46978980 + Tigger3b DNA MER2_type 191 687 -544 1070 192 93 0 chr9 70883656 70883968 -46978659 + L1 LINE L1 2927 3267 -2879 2957 125 43 34 chr9 70883969 70884289 -46978338 + Tigger3b DNA MER2_type 669 999 -2029 1818 151 0 7 chr9 70884289 70884596 -46978031 - AluJb SINE Alu 0 305 1 2957 125 43 34 chr9 70884596 70884832 -46977795 + Tigger3b DNA MER2_type 999 1231 0 189 333 0 0 chr9 70885591 70885645 -46976982 - L2 LINE L2 -872 2442 2389 1841 142 3 22 chr9 70885689 70886041 -46976586 - MER4A LTR ERV1 0 664 261 598 95 21 11 chr9 70886041 70886136 -46976491 - MER4A LTR ERV1 -566 98 3 187 232 54 54 chr9 70886323 70886379 -46976248 - MIR SINE MIR -50 212 157 312 236 32 114 chr9 70887519 70887642 -46974985 - L2 LINE L2 0 3313 3201 336 345 45 0 chr9 70887681 70887791 -46974836 + L2 LINE L2 3158 3272 0 6187 87 68 19 chr9 70888164 70889726 -46972901 - MER4-int LTR ERV1 -1634 4964 2738 1197 157 94 0 chr9 70889727 70889962 -46972665 + LTR8 LTR ERV1 1 257 -434 292 22 0 22 chr9 70889962 70890008 -46972619 - MER4-int LTR ERV1 -4103 2495 2451 2590 233 107 31 chr9 70890162 70890603 -46972024 + L1MEc LINE L1 40 446 -5950 209 33 33 0 chr9 70890603 70890633 -46971994 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 2590 233 107 31 chr9 70890633 70891200 -46971427 + L1MEc LINE L1 446 1125 -5271 4478 136 80 16 chr9 70891299 70891922 -46970705 + L1MC1 LINE L1 5420 6114 -219 1725 158 45 12 chr9 70891922 70892252 -46970375 - MER2 DNA MER2_type -1 343 3 4478 136 80 16 chr9 70892252 70892487 -46970140 + L1MC1 LINE L1 6114 6333 0 22 35 0 0 chr9 70892506 70892535 -46970092 + AT_rich Low_complexity Low_complexity 1 29 0 504 273 130 20 chr9 70892632 70892757 -46969870 - L1MEc LINE L1 -3685 2530 2420 1445 147 81 4 chr9 70892757 70893029 -46969598 - L1PA16 LINE L1 0 6166 5874 504 273 130 20 chr9 70893029 70893533 -46969094 - L1MEc LINE L1 -3795 2420 1875 991 167 73 20 chr9 70893553 70893757 -46968870 - MER20 DNA MER1_type -3 216 2 245 169 13 39 chr9 70893902 70893979 -46968648 - L1MEc LINE L1 -4627 1588 1514 788 192 0 0 chr9 70894049 70894219 -46968408 - FLAM_A SINE Alu 0 170 1 368 292 85 31 chr9 70894240 70894958 -46967669 - L1MEc LINE L1 -4711 1504 790 2350 96 0 10 chr9 70895076 70895388 -46967239 + AluSg SINE Alu 1 309 -1 270 0 0 0 chr9 70895388 70895418 -46967209 + (TA)n Simple_repeat Simple_repeat 2 31 0 560 294 47 122 chr9 70895810 70896235 -46966392 - L1M4c LINE L1 -900 1843 1251 24 32 0 0 chr9 70897587 70897618 -46965009 + AT_rich Low_complexity Low_complexity 1 31 0 199 291 76 0 chr9 70898648 70898727 -46963900 + MIR3 SINE MIR 70 154 -54 * 394 306 123 0 chr9 70898723 70898893 -46963734 + MIR SINE MIR 34 224 -38 2187 89 3 35 chr9 70898920 70899235 -46963392 - AluSq SINE Alu -8 305 1 2157 117 3 0 chr9 70899438 70899745 -46962882 + AluSx SINE Alu 1 308 0 355 259 9 35 chr9 70899755 70899871 -46962756 + L1ME4a LINE L1 5320 5432 -732 201 292 0 0 chr9 70899930 70899978 -46962649 + MER5B DNA MER1_type 131 178 0 237 231 93 9 chr9 70900362 70900470 -46962157 + L1ME4a LINE L1 5893 6009 -112 343 177 0 0 chr9 70901873 70901935 -46960692 - L1ME LINE L1 -369 5793 5732 2147 98 7 7 chr9 70902216 70902511 -46960116 + AluSc SINE Alu 1 295 -14 2279 102 0 0 chr9 70902550 70902843 -46959784 + AluSg SINE Alu 1 293 -17 2248 100 3 0 chr9 70903039 70903338 -46959289 + AluSg SINE Alu 1 300 -10 536 136 43 0 chr9 70903346 70903457 -46959170 - L1MA7 LINE L1 -222 6078 5952 599 146 0 29 chr9 70903500 70903603 -46959024 - AluSq SINE Alu -93 220 121 1798 104 128 26 chr9 70903603 70903846 -46958781 - L1MA7 LINE L1 -372 5940 5650 2291 121 0 0 chr9 70903846 70904151 -46958476 - AluSg SINE Alu -5 305 1 1798 104 128 26 chr9 70904151 70904252 -46958375 - L1MA7 LINE L1 -662 5650 5561 * 6717 147 26 49 chr9 70904245 70904554 -46958073 - L1P LINE L1 -767 5364 5049 2052 101 13 50 chr9 70904554 70904871 -46957756 - AluSc SINE Alu -4 305 1 6717 147 26 49 chr9 70904871 70905260 -46957367 - L1P LINE L1 -1082 5049 4653 2192 117 3 3 chr9 70905260 70905560 -46957067 + AluSx SINE Alu 12 311 -1 6717 147 26 49 chr9 70905560 70906253 -46956374 - L1P LINE L1 -1478 4653 4012 2132 135 0 0 chr9 70906253 70906550 -46956077 + AluSx SINE Alu 1 297 -15 6717 147 26 49 chr9 70906550 70906653 -46955974 - L1P LINE L1 -2119 4012 3908 2168 91 0 26 chr9 70906772 70907079 -46955548 - AluSq SINE Alu -10 303 5 6103 123 128 112 chr9 70907122 70908792 -46953835 + pTR5 LTR ERV1 742 2438 0 385 283 61 10 chr9 70908794 70908992 -46953635 + L1M4 LINE L1 3347 3554 -2592 484 247 140 84 chr9 70908993 70909346 -46953281 + L1M4 LINE L1 3634 3966 -2180 2506 181 25 22 chr9 70909346 70909894 -46952733 + L1MB7 LINE L1 5630 6179 -5 484 247 140 84 chr9 70909894 70910169 -46952458 + L1M4 LINE L1 3966 4328 -1818 717 223 72 78 chr9 70910654 70911152 -46951475 + L1M4 LINE L1 4350 4844 -1302 512 255 51 38 chr9 70911224 70911381 -46951246 + L3 LINE CR1 1271 1429 -148 2102 111 0 0 chr9 70911429 70911734 -46950893 + AluSx SINE Alu 6 310 0 2247 89 3 7 chr9 70912175 70912466 -46950161 + AluSc SINE Alu 1 290 -19 924 228 17 22 chr9 70912707 70912939 -46949688 - MER115 DNA AcHobo -19 674 444 496 326 76 0 chr9 70913008 70913180 -46949447 - MER115 DNA AcHobo -381 312 128 978 211 0 0 chr9 70913403 70913564 -46949063 - AluJb SINE Alu -18 294 134 203 32 65 0 chr9 70913564 70913595 -46949032 + T-rich Low_complexity Low_complexity 2 34 0 2089 104 0 0 chr9 70913595 70913892 -46948735 - L1PB1 LINE L1 -10 6141 5845 293 172 0 16 chr9 70913901 70913965 -46948662 + L1PB1 LINE L1 5777 5839 -312 355 191 36 67 chr9 70913973 70914102 -46948525 + L1MC4 LINE L1 1995 6983 -1339 256 100 50 80 chr9 70914111 70914211 -46948416 + (ATATG)n Simple_repeat Simple_repeat 3 99 0 12673 194 66 29 chr9 70914232 70914245 -46948382 - L1P5 LINE L1 -356 6511 6500 237 65 0 0 chr9 70914245 70914276 -46948351 + (CA)n Simple_repeat Simple_repeat 1 31 0 12673 194 66 29 chr9 70914276 70916232 -46946395 - L1P5 LINE L1 -367 6500 4618 2280 93 7 10 chr9 70916232 70916542 -46946085 - AluSq SINE Alu -4 309 1 12673 194 66 29 chr9 70916542 70916690 -46945937 - L1P5 LINE L1 -2249 4618 4477 2175 125 0 0 chr9 70916690 70916995 -46945632 - AluSg SINE Alu -5 305 1 12673 194 66 29 chr9 70916995 70917063 -46945564 - L1P5 LINE L1 -2390 4477 4413 333 0 0 0 chr9 70917063 70917100 -46945527 + (TTG)n Simple_repeat Simple_repeat 3 39 0 12673 194 66 29 chr9 70917100 70917274 -46945353 - L1P5 LINE L1 -2454 4413 4247 2329 115 3 6 chr9 70917274 70917588 -46945039 - AluSq SINE Alu 0 313 1 12673 194 66 29 chr9 70917588 70919699 -46942928 - L1P5 LINE L1 -2620 4247 2216 2296 96 0 7 chr9 70919699 70920002 -46942625 - AluSc SINE Alu -8 301 1 12673 194 66 29 chr9 70920002 70921700 -46940927 - L1P5 LINE L1 -4651 2216 6 890 121 0 15 chr9 70921725 70921857 -46940770 - FLAM_C SINE Alu 0 133 4 1529 175 89 14 chr9 70921942 70922222 -46940405 + AluJo SINE Alu 1 301 -11 213 94 0 0 chr9 70922917 70922949 -46939678 + (T)n Simple_repeat Simple_repeat 1 32 0 392 250 56 56 chr9 70923867 70924027 -46938600 - MIR SINE MIR -6 256 97 285 283 75 75 chr9 70924161 70924253 -46938374 + MIR3 SINE MIR 36 130 -78 2508 83 0 3 chr9 70924253 70924565 -46938062 - AluSq SINE Alu -2 311 1 285 283 75 75 chr9 70924565 70924631 -46937996 + MIR3 SINE MIR 129 194 -14 292 136 15 15 chr9 70925801 70925867 -46936760 + CT-rich Low_complexity Low_complexity 1 66 0 2091 132 0 7 chr9 70926166 70926469 -46936158 + AluSx SINE Alu 3 303 -9 393 276 97 25 chr9 70926518 70926787 -46935840 - L2 LINE L2 -767 2547 2183 439 295 120 17 chr9 70926870 70927104 -46935523 + L1MC/D LINE L1 5513 5770 -2038 9524 132 89 99 chr9 70927115 70927255 -46935372 + L1MB3 LINE L1 19 159 -6225 1498 106 18 9 chr9 70927255 70927482 -46935145 + MER30 DNA MER1_type 2 230 0 9524 132 89 99 chr9 70927482 70928080 -46934547 + L1MB3 LINE L1 159 761 -5623 2290 102 3 0 chr9 70928080 70928385 -46934242 + AluSg SINE Alu 1 306 -4 9524 132 89 99 chr9 70928385 70929429 -46933198 + L1MB3 LINE L1 761 1774 -4610 285 51 0 0 chr9 70929429 70929468 -46933159 + (TA)n Simple_repeat Simple_repeat 1 39 0 9524 132 89 99 chr9 70929468 70930126 -46932501 + L1MB3 LINE L1 1774 2437 -3947 25905 56 5 5 chr9 70930131 70936281 -46926346 - L1PA5 LINE L1 -2 6152 1 4733 181 39 27 chr9 70936323 70937591 -46925036 + L1MB3 LINE L1 4426 5721 -698 2293 109 0 0 chr9 70937591 70937885 -46924742 + AluSg SINE Alu 1 294 -16 4733 181 39 27 chr9 70937885 70938585 -46924042 + L1MB3 LINE L1 5721 6411 -8 28 48 0 0 chr9 70938700 70938742 -46923885 + AT_rich Low_complexity Low_complexity 1 42 0 238 172 0 86 chr9 70938804 70938862 -46923765 - Alu SINE Alu -249 53 1 589 276 88 57 chr9 70938907 70939291 -46923336 + L1ME3A LINE L1 5298 5693 -469 1385 113 0 5 chr9 70939291 70939476 -46923151 + AluSq SINE Alu 1 184 -129 505 235 62 19 chr9 70939476 70939638 -46922989 + L1ME3A LINE L1 5779 5947 -223 542 220 46 0 chr9 70939733 70939842 -46922785 + FLAM_A SINE Alu 1 114 -19 234 0 0 0 chr9 70939842 70939868 -46922759 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 22152 26 2 0 chr9 70939868 70943222 -46919405 - L1PA3 LINE L1 -10 6145 2786 441 282 110 25 chr9 70943406 70943836 -46918791 + L1M4c LINE L1 1360 1998 -745 1840 154 0 14 chr9 70944090 70944417 -46918210 - AluJb SINE Alu 0 323 1 22 35 0 0 chr9 70944459 70944488 -46918139 + AT_rich Low_complexity Low_complexity 1 29 0 266 247 12 25 chr9 70944764 70944845 -46917782 - MLT1K LTR MaLR 0 588 509 1641 181 29 0 chr9 70946396 70946673 -46915954 - AluJb SINE Alu 0 312 28 231 271 0 17 chr9 70946947 70947006 -46915621 - L2 LINE L2 0 3313 3256 835 211 21 5 chr9 70947451 70947645 -46914982 - L1ME LINE L1 -395 5771 5575 1741 253 90 93 chr9 70947649 70948104 -46914523 + L1M4 LINE L1 13 468 -6074 2270 103 3 0 chr9 70948104 70948404 -46914223 - AluSq SINE Alu -12 301 1 1741 253 90 93 chr9 70948404 70949241 -46913386 + L1M4 LINE L1 468 1301 -5241 2248 90 10 3 chr9 70949249 70949538 -46913089 + AluSp SINE Alu 1 291 -22 1685 161 73 52 chr9 70949549 70949903 -46912724 + L1MB5 LINE L1 5769 6133 -41 2129 103 3 48 chr9 70949903 70950215 -46912412 + AluSx SINE Alu 1 298 -14 1685 161 73 52 chr9 70950215 70950244 -46912383 + L1MB5 LINE L1 6133 6160 -14 207 0 0 0 chr9 70950293 70950316 -46912311 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2381 58 3 20 chr9 70950319 70950612 -46912015 - AluY SINE Alu -23 288 1 439 208 20 20 chr9 70950746 70950847 -46911780 + L1M4 LINE L1 5428 5528 -650 1796 142 7 58 chr9 70951107 70951416 -46911211 + AluSx SINE Alu 3 295 -17 247 217 14 43 chr9 70951434 70951503 -46911124 - L1ME LINE L1 -577 5589 5523 461 232 27 9 chr9 70951658 70951770 -46910857 - L1ME LINE L1 -636 5542 5429 2361 57 3 3 chr9 70953197 70953501 -46909126 + AluY SINE Alu 1 304 0 232 280 9 37 chr9 70953884 70953991 -46908636 + L2 LINE L2 3124 3227 -86 239 88 0 123 chr9 70953994 70954025 -46908602 - L1ME3A LINE L1 0 6170 6147 761 21 43 0 chr9 70954025 70954119 -46908508 + L1PA4 LINE L1 6055 6152 -3 239 88 0 123 chr9 70954119 70954144 -46908483 - L1ME3A LINE L1 -23 6147 6121 203 234 13 0 chr9 70954150 70954227 -46908400 + (TA)n Simple_repeat Simple_repeat 2 79 0 1857 244 98 28 chr9 70954240 70954932 -46907695 - L1ME3A LINE L1 -44 6126 5383 265 203 34 17 chr9 70955007 70955066 -46907561 - MLT1K LTR MaLR -31 557 498 1229 153 31 54 chr9 70955974 70956235 -46906392 + L1MC3 LINE L1 7521 7775 -10 348 209 58 12 chr9 70956239 70956325 -46906302 - MER69A DNA AcHobo -87 90 1 202 241 12 48 chr9 70956467 70956550 -46906077 + MIR SINE MIR 112 191 -71 890 139 0 0 chr9 70956732 70956854 -46905773 + FLAM_C SINE Alu 1 122 -21 24 32 0 0 chr9 70956855 70956886 -46905741 + AT_rich Low_complexity Low_complexity 1 31 0 2512 81 0 3 chr9 70956949 70957257 -46905370 - AluSq SINE Alu -6 307 1 1463 207 4 4 chr9 70957312 70957587 -46905040 - AluJb SINE Alu -23 289 15 2305 92 23 0 chr9 70957617 70957921 -46904706 - AluSx SINE Alu -1 311 1 26 30 0 0 chr9 70957999 70958032 -46904595 + AT_rich Low_complexity Low_complexity 1 33 0 375 181 48 0 chr9 70958032 70958115 -46904512 + HAL1 LINE L1 1578 1664 -843 255 233 14 27 chr9 70958109 70958182 -46904445 + HAL1 LINE L1 12 83 -2424 * 1232 186 18 5 chr9 70958186 70958407 -46904220 - AluJo SINE Alu -5 307 84 441 132 0 0 chr9 70958456 70958532 -46904095 + FLAM_C SINE Alu 68 143 0 382 306 111 10 chr9 70959150 70959349 -46903278 + MIR SINE MIR 7 225 -37 1931 110 27 53 chr9 70960885 70961186 -46901441 + AluSx SINE Alu 1 293 -19 2295 112 0 0 chr9 70961464 70961776 -46900851 - AluSx SINE Alu 0 312 1 790 204 123 37 chr9 70962041 70962330 -46900297 - MER58B DNA MER1_type -16 325 1 1384 213 167 2 chr9 70963983 70964397 -46898230 + L1MC4 LINE L1 6704 7185 -857 1939 95 0 0 chr9 70964907 70965148 -46897479 - AluSc SINE Alu -68 241 1 216 274 42 63 chr9 70965171 70965266 -46897361 - MIR SINE MIR -83 125 33 245 175 0 88 chr9 70965839 70965919 -46896708 + L2 LINE L2 2633 2705 -609 1497 182 80 79 chr9 70966050 70966656 -46895971 - L1ME LINE L1 -429 5737 5133 2116 138 3 0 chr9 70966656 70966953 -46895674 - AluSq SINE Alu -15 298 1 1497 182 80 79 chr9 70966953 70967052 -46895575 - L1ME LINE L1 -1033 5133 5036 1872 138 14 37 chr9 70967052 70967348 -46895279 - AluSx SINE Alu -23 289 1 1497 182 80 79 chr9 70967348 70967477 -46895150 - L1ME LINE L1 -1130 5036 4896 2382 166 109 50 chr9 70967576 70968039 -46894588 + L1MB7 LINE L1 4862 5403 -781 1911 159 3 3 chr9 70968039 70968334 -46894293 + AluJb SINE Alu 1 295 -17 2382 166 109 50 chr9 70968334 70968683 -46893944 + L1MB7 LINE L1 5403 5730 -454 1717 99 0 0 chr9 70968683 70968896 -46893731 + AluSc SINE Alu 1 213 -96 983 117 0 0 chr9 70968896 70969048 -46893579 + AluSg/x SINE Alu 155 306 0 362 154 44 0 chr9 70969062 70969175 -46893452 + L1MB7 LINE L1 5718 5942 -236 504 220 38 15 chr9 70969175 70969307 -46893320 - L1M4 LINE L1 -1107 5039 4905 711 174 53 89 chr9 70969400 70969647 -46892980 + L1MB7 LINE L1 5928 6165 -19 2194 77 10 30 chr9 70971802 70972102 -46890525 - AluSq SINE Alu -19 294 1 2170 100 0 4 chr9 70972113 70972415 -46890212 - AluSc SINE Alu 0 301 1 441 259 98 40 chr9 70974161 70974455 -46888172 - L1ME LINE L1 -475 5695 5386 304 322 85 10 chr9 70982116 70982315 -46880312 - MIR SINE MIR -41 221 8 605 253 178 51 chr9 70982885 70982946 -46879681 + L1ME3A LINE L1 3188 3240 -2906 1860 185 14 22 chr9 70982946 70983314 -46879313 - MLT1A1 LTR MaLR 0 365 1 605 253 178 51 chr9 70983314 70983570 -46879057 + L1ME3A LINE L1 3240 3462 -2684 1985 162 0 10 chr9 70983570 70983879 -46878748 - AluJo SINE Alu -6 306 1 605 253 178 51 chr9 70983879 70984785 -46877842 + L1ME3A LINE L1 3462 4624 -1522 290 301 0 11 chr9 70984819 70984912 -46877715 + L1ME3A LINE L1 4612 4703 -1443 1541 266 108 50 chr9 70984962 70985215 -46877412 + L1ME3A LINE L1 4917 5154 -1016 2574 74 0 0 chr9 70985215 70985525 -46877102 + AluY SINE Alu 1 310 -1 1541 266 108 50 chr9 70985525 70986039 -46876588 + L1ME3A LINE L1 5154 5637 -533 1097 173 14 37 chr9 70986039 70986117 -46876510 - MER6B DNA MER2_type -655 210 132 1741 158 3 59 chr9 70986117 70986262 -46876365 + AluJo SINE Alu 1 153 -159 2009 96 75 4 chr9 70986262 70986542 -46876085 + AluSg SINE Alu 2 301 -9 1741 158 3 59 chr9 70986542 70986719 -46875908 + AluJo SINE Alu 153 305 -7 1097 173 14 37 chr9 70986719 70986854 -46875773 - MER6B DNA MER2_type -733 132 2 1541 266 108 50 chr9 70986854 70987235 -46875392 + L1ME3A LINE L1 5637 6140 -30 21 36 0 0 chr9 70987275 70987303 -46875324 + AT_rich Low_complexity Low_complexity 1 28 0 270 315 0 0 chr9 70987417 70987528 -46875099 + L1MB7 LINE L1 5621 5731 -390 982 244 82 77 chr9 70987859 70988178 -46874449 + L1MEd LINE L1 616 932 -5378 2515 74 0 0 chr9 70988178 70988475 -46874152 + AluY SINE Alu 1 297 -14 982 244 82 77 chr9 70988475 70989142 -46873485 + L1MEd LINE L1 932 1654 -4656 * 5765 213 47 35 chr9 70989126 70990656 -46871971 + L1MB8 LINE L1 3333 4844 -1334 2229 115 0 13 chr9 70990656 70990960 -46871667 + AluSx SINE Alu 1 300 -12 5765 213 47 35 chr9 70990960 70991006 -46871621 + L1MB8 LINE L1 4844 4888 -1290 902 173 19 31 chr9 70991006 70991168 -46871459 + FRAM SINE Alu 1 159 -17 5765 213 47 35 chr9 70991168 70991532 -46871095 + L1MB8 LINE L1 4888 5246 -932 1319 137 191 31 chr9 70991532 70991788 -46870839 + AluSc SINE Alu 1 297 -2 5765 213 47 35 chr9 70991788 70992626 -46870001 + L1MB8 LINE L1 5246 6178 0 439 243 118 21 chr9 70992974 70993118 -46869509 + MER58A DNA MER1_type 1 158 0 2168 108 42 0 chr9 70993256 70993544 -46869083 - AluSg SINE Alu -10 300 1 2964 214 100 11 chr9 70993728 70994481 -46868146 - L1MD2 LINE L1 -94 6265 5446 315 130 87 29 chr9 70994539 70994608 -46868019 - L1ME4a LINE L1 -11 6110 6038 318 138 12 125 chr9 70995030 70995073 -46867554 - Charlie4 DNA MER1_type -34 1927 1895 2268 113 0 3 chr9 70995073 70995373 -46867254 - AluY SINE Alu -12 299 1 318 138 12 125 chr9 70995373 70995409 -46867218 - Charlie4 DNA MER1_type -66 1895 1857 1334 187 56 20 chr9 70995448 70995699 -46866928 - AluJb SINE Alu -23 289 30 692 243 68 17 chr9 70995745 70995980 -46866647 - Charlie4 DNA MER1_type -1701 260 14 593 115 0 21 chr9 70997760 70997856 -46864771 - AluSg/x SINE Alu 0 312 219 229 260 110 23 chr9 70998342 70998419 -46864208 + L1MB7 LINE L1 5745 5814 -307 1865 161 0 23 chr9 70998419 70998729 -46863898 + AluJb SINE Alu 3 305 -7 229 260 110 23 chr9 70998729 70998824 -46863803 + L1MB7 LINE L1 5814 5932 -189 1796 156 54 0 chr9 70999111 70999387 -46863240 + AluSx SINE Alu 11 301 -11 25 31 0 0 chr9 71001091 71001123 -46861504 + AT_rich Low_complexity Low_complexity 1 32 0 1916 157 3 3 chr9 71001124 71001411 -46861216 - AluJo SINE Alu -25 287 1 29 28 0 0 chr9 71001786 71001822 -46860805 + AT_rich Low_complexity Low_complexity 1 36 0 519 321 49 66 chr9 71005205 71005738 -46856889 + L1MC4a LINE L1 5483 5789 -332 1631 206 26 92 chr9 71006168 71006703 -46855924 + L1M4 LINE L1 -261 238 -6042 2537 188 20 9 chr9 71006715 71007171 -46855456 + L1M4 LINE L1 593 1058 -5222 1951 165 3 7 chr9 71007171 71007480 -46855147 + AluJb SINE Alu 1 308 -4 2537 188 20 9 chr9 71007480 71007582 -46855045 + L1M4 LINE L1 1058 1157 -5123 1897 222 30 39 chr9 71007575 71008249 -46854378 + L1M4 LINE L1 1393 2154 -4230 * 2641 215 121 73 chr9 71008275 71008738 -46853889 + L1M4 LINE L1 2808 3247 -3135 1521 69 0 0 chr9 71008738 71008912 -46853715 + AluY SINE Alu 1 174 -137 407 101 14 0 chr9 71008912 71008981 -46853646 + AluY SINE Alu 241 310 0 2641 215 121 73 chr9 71008981 71009700 -46852927 + L1M4 LINE L1 3246 4119 -2263 393 194 61 0 chr9 71009708 71009806 -46852821 + L1MB7 LINE L1 6037 6140 -44 712 154 90 45 chr9 71009817 71009973 -46852654 + FRAM SINE Alu 1 163 -13 2391 101 0 0 chr9 71011808 71012105 -46850522 + AluSg SINE Alu 1 297 -13 2236 99 0 19 chr9 71012107 71012419 -46850208 + AluSc SINE Alu 4 309 0 1143 228 121 19 chr9 71012424 71012797 -46849830 + MER77 LTR ERV1 184 594 -11 203 188 0 78 chr9 71013443 71013507 -46849120 + G-rich Low_complexity Low_complexity 5 63 0 1984 118 0 82 chr9 71013770 71014101 -46848526 - AluSx SINE Alu -5 307 4 2597 63 0 0 chr9 71014230 71014530 -46848097 + AluY SINE Alu 1 300 -11 303 262 48 0 chr9 71014735 71014819 -46847808 + L1MB3 LINE L1 6081 6168 -15 2293 96 20 0 chr9 71015632 71015933 -46846694 + AluSg SINE Alu 1 307 -3 1883 141 27 13 chr9 71016297 71016595 -46846032 + AluJb SINE Alu 1 302 -10 2290 107 3 0 chr9 71019130 71019428 -46843199 + AluSx SINE Alu 1 299 -13 191 163 0 70 chr9 71020330 71020373 -46842254 - MIR SINE MIR -107 155 116 390 263 48 66 chr9 71020990 71021276 -46841351 + L1ME3A LINE L1 5719 5953 -188 261 206 98 54 chr9 71021348 71021440 -46841187 + L1ME3A LINE L1 6075 6170 0 21 71 0 0 chr9 71021541 71021583 -46841044 + AT_rich Low_complexity Low_complexity 1 42 0 2321 86 13 3 chr9 71024306 71024610 -46838017 + AluSp SINE Alu 1 307 -6 250 287 99 15 chr9 71025130 71025217 -46837410 + L1ME4a LINE L1 5855 5933 -188 1202 230 145 7 chr9 71025217 71025521 -46837106 + MER7A DNA MER2_type 1 344 -2 250 287 99 15 chr9 71025521 71025635 -46836992 + L1ME4a LINE L1 5933 6073 -48 428 274 8 8 chr9 71027462 71027586 -46835041 - L1ME LINE L1 -399 5722 5599 309 254 116 0 chr9 71027595 71027733 -46834894 - L1ME4a LINE L1 -1 6120 5967 22 35 0 0 chr9 71027829 71027858 -46834769 + AT_rich Low_complexity Low_complexity 1 29 0 252 286 61 10 chr9 71028316 71028414 -46834213 + L3 LINE CR1 700 802 -775 1974 122 58 0 chr9 71029699 71029977 -46832650 + AluSx SINE Alu 1 294 -18 2255 97 7 0 chr9 71030052 71030359 -46832268 + AluSx SINE Alu 3 312 0 251 269 39 0 chr9 71030981 71031059 -46831568 + MIR SINE MIR 73 153 -109 233 354 0 0 chr9 71031102 71031167 -46831460 - MIR SINE MIR -79 183 119 245 292 133 17 chr9 71032455 71032575 -46830052 + MIR SINE MIR 37 170 -92 637 182 131 21 chr9 71032821 71032967 -46829660 - Charlie1 DNA MER1_type -6 2755 2626 2515 84 0 0 chr9 71032967 71033276 -46829351 + AluSx SINE Alu 1 309 -3 637 182 131 21 chr9 71033276 71033463 -46829164 - Charlie1 DNA MER1_type -135 2626 2343 1875 127 34 28 chr9 71033605 71033896 -46828731 + AluJb SINE Alu 1 293 -19 2248 100 7 0 chr9 71033904 71034194 -46828433 + AluSg SINE Alu 1 292 -18 353 181 39 110 chr9 71034522 71034589 -46828038 - MER97a DNA MER1_type? -716 178 123 1828 158 3 14 chr9 71034589 71034880 -46827747 + AluJb SINE Alu 2 289 -23 353 181 39 110 chr9 71034880 71034939 -46827688 - MER97a DNA MER1_type? -771 123 61 2196 117 10 0 chr9 71034996 71035295 -46827332 + AluSx SINE Alu 1 302 -10 402 197 0 0 chr9 71035369 71035440 -46827187 + MLT1A2 LTR MaLR 293 363 -11 205 264 19 0 chr9 71035537 71035590 -46827037 + GA-rich Low_complexity Low_complexity 3 56 0 2386 87 0 3 chr9 71035635 71035935 -46826692 + AluSc SINE Alu 1 299 -10 1563 184 46 46 chr9 71036044 71036604 -46826023 + L1MD3 LINE L1 7302 7991 0 373 337 87 30 chr9 71036618 71036665 -46825962 + L1MB3 LINE L1 5389 5432 -2376 2286 112 7 0 chr9 71036665 71036968 -46825659 + AluSx SINE Alu 1 305 -7 373 337 87 30 chr9 71036968 71037220 -46825407 + L1MB3 LINE L1 5432 5705 -2103 221 206 44 44 chr9 71037275 71037343 -46825284 - MER5A DNA MER1_type -118 71 4 2546 72 0 3 chr9 71037531 71037838 -46824789 - AluSg SINE Alu -4 306 1 2430 80 7 0 chr9 71037937 71038236 -46824391 - AluY SINE Alu -10 301 1 904 205 55 10 chr9 71038744 71038944 -46823683 - MSTD LTR MaLR -8 388 180 669 159 6 96 chr9 71039522 71039580 -46823047 - MSTD LTR MaLR -285 143 81 2289 126 0 0 chr9 71039580 71039882 -46822745 - AluSx SINE Alu -10 302 1 669 159 6 96 chr9 71039882 71039980 -46822647 - MSTD LTR MaLR -347 81 1 1532 191 27 24 chr9 71040291 71040585 -46822042 + AluJo SINE Alu 4 298 -14 1425 134 8 38 chr9 71040590 71040800 -46821827 + L1MB3 LINE L1 5928 6130 -53 2154 88 63 3 chr9 71040800 71041084 -46821543 + AluSq SINE Alu 1 301 -12 1425 134 8 38 chr9 71041084 71041135 -46821492 + L1MB3 LINE L1 6130 6181 -2 305 319 108 30 chr9 71043212 71043378 -46819249 + L1MC/D LINE L1 5474 5652 -2156 413 184 11 23 chr9 71043420 71043507 -46819120 - MER20 DNA MER1_type 0 219 134 1157 210 128 66 chr9 71043536 71043595 -46819032 + MLT2B1 LTR ERVL 72 126 -394 1991 141 32 46 chr9 71043595 71043965 -46818662 - MLT1A1 LTR MaLR 0 365 1 1157 210 128 66 chr9 71043965 71044328 -46818299 + MLT2B1 LTR ERVL 126 520 0 532 224 30 8 chr9 71044328 71044462 -46818165 - MER20 DNA MER1_type -80 139 3 2578 63 0 0 chr9 71044624 71044924 -46817703 + AluY SINE Alu 1 300 -11 2287 117 3 0 chr9 71045231 71045538 -46817089 + AluSx SINE Alu 1 308 -4 2206 120 0 19 chr9 71045795 71046104 -46816523 - AluSx SINE Alu -9 303 1 338 197 14 0 chr9 71046160 71046231 -46816396 + L1ME1 LINE L1 4700 4771 -1375 1743 155 75 0 chr9 71046236 71046514 -46816113 + AluJo SINE Alu 1 299 -13 2228 108 3 0 chr9 71046545 71046842 -46815785 + AluSg SINE Alu 1 298 -12 966 163 11 28 chr9 71046848 71047026 -46815601 + FRAM SINE Alu 2 176 0 888 258 127 48 chr9 71047099 71047306 -46815321 + L1ME1 LINE L1 5276 5465 -699 2097 120 21 0 chr9 71047306 71047590 -46815037 + AluSx SINE Alu 5 294 -18 888 258 127 48 chr9 71047590 71047959 -46814668 + L1ME1 LINE L1 5465 5898 -266 561 226 155 0 chr9 71047968 71048149 -46814478 + L1ME1 LINE L1 5953 6161 -5 1650 143 6 93 chr9 71048174 71048302 -46814325 + AluJo SINE Alu 1 139 -179 1913 150 3 3 chr9 71048302 71048595 -46814032 - AluJb SINE Alu -17 295 3 2208 73 7 36 chr9 71048601 71048902 -46813725 - AluY SINE Alu -19 292 1 1650 143 6 93 chr9 71048902 71049112 -46813515 + AluJo SINE Alu 144 318 0 277 240 48 39 chr9 71049125 71049229 -46813398 + L1ME3A LINE L1 5473 5577 -2208 233 313 152 9 chr9 71049305 71049516 -46813111 + L1ME3A LINE L1 5694 5934 -236 2335 97 0 3 chr9 71049516 71049814 -46812813 + AluY SINE Alu 1 297 -14 2179 108 3 0 chr9 71050063 71050351 -46812276 - AluSx SINE Alu -23 289 1 2434 78 0 0 chr9 71050978 71051271 -46811356 + AluY SINE Alu 1 293 -18 308 138 17 0 chr9 71051319 71051377 -46811250 + L1M4 LINE L1 2336 2394 -4002 231 118 0 0 chr9 71051377 71051411 -46811216 + L1M4 LINE L1 5515 5548 -695 4959 166 131 20 chr9 71051416 71051598 -46811029 - L1MCb LINE L1 -4273 2291 2131 2438 88 7 0 chr9 71051598 71051904 -46810723 - AluY SINE Alu -3 308 1 4959 166 131 20 chr9 71051904 71053113 -46809514 - L1MCb LINE L1 -4433 2131 660 2208 112 0 0 chr9 71053113 71053422 -46809205 - AluSg SINE Alu 0 309 1 4959 166 131 20 chr9 71053422 71053810 -46808817 - L1MCb LINE L1 -5904 660 316 2092 234 46 58 chr9 71053828 71054343 -46808284 - L1M4 LINE L1 -2056 4090 3570 2329 98 3 10 chr9 71054343 71054648 -46807979 - AluSp SINE Alu -10 303 1 2092 234 46 58 chr9 71054648 71055005 -46807622 - L1M4 LINE L1 -2576 3570 3227 2073 138 16 3 chr9 71055005 71055309 -46807318 - AluSx SINE Alu -4 308 1 13283 205 31 83 chr9 71055309 71056391 -46806236 - L1P4 LINE L1 -673 6143 5007 2317 122 0 0 chr9 71056391 71056703 -46805924 - AluSx SINE Alu 0 312 1 13283 205 31 83 chr9 71056703 71057607 -46805020 - L1P4 LINE L1 -1809 5007 4058 210 37 0 0 chr9 71057607 71057634 -46804993 + (TTG)n Simple_repeat Simple_repeat 2 28 0 13283 205 31 83 chr9 71057634 71058142 -46804485 - L1P4 LINE L1 -2758 4058 3525 2383 25 0 0 chr9 71058142 71058418 -46804209 - L1PA4 LINE L1 0 6155 5880 13283 205 31 83 chr9 71058418 71059382 -46803245 - L1P4 LINE L1 -3291 3525 2513 716 160 0 0 chr9 71059382 71059488 -46803139 - AluJb SINE Alu -205 107 2 13283 205 31 83 chr9 71059488 71061077 -46801550 - L1P4 LINE L1 -4303 2513 1259 1126 128 133 34 chr9 71061132 71061366 -46801261 - Tigger2 DNA MER2_type 0 2718 2462 3822 139 41 15 chr9 71061429 71062105 -46800522 - Tigger2 DNA MER2_type -1978 740 47 1962 128 24 3 chr9 71062108 71062404 -46800223 + AluJb SINE Alu 1 302 -10 2028 163 0 0 chr9 71062407 71062708 -46799919 + AluJb SINE Alu 1 301 -11 2601 220 70 34 chr9 71062720 71063605 -46799022 - L1MCa LINE L1 -1070 5356 4440 957 161 84 0 chr9 71063659 71063814 -46798813 - AluJo SINE Alu -144 168 1 5506 255 40 31 chr9 71063823 71064441 -46798186 - L1MCa LINE L1 -1987 4439 3828 2381 88 0 3 chr9 71064441 71064737 -46797890 + AluSq SINE Alu 2 296 -17 5506 255 40 31 chr9 71064737 71065064 -46797563 - L1MCa LINE L1 -2598 3828 3506 2064 92 13 56 chr9 71065064 71065370 -46797257 + AluY SINE Alu 1 293 -18 5506 255 40 31 chr9 71065370 71065534 -46797093 - L1MCa LINE L1 -2920 3506 3345 2523 71 0 3 chr9 71065534 71065845 -46796782 - AluY SINE Alu -1 310 1 5506 255 40 31 chr9 71065845 71066643 -46795984 - L1MCa LINE L1 -3081 3345 2556 1291 194 85 96 chr9 71066643 71067080 -46795547 + MSTB1 LTR MaLR 1 432 0 5506 255 40 31 chr9 71067080 71067116 -46795511 - L1MCa LINE L1 -3870 2556 2522 2315 105 7 0 chr9 71067116 71067412 -46795215 - AluSx SINE Alu -14 298 1 786 170 18 25 chr9 71067466 71067643 -46794984 - L1MCa LINE L1 -3980 2446 2288 1158 193 75 97 chr9 71067643 71067699 -46794928 - MLT1A1 LTR MaLR 0 365 309 2541 65 3 0 chr9 71067699 71068005 -46794622 - AluY SINE Alu -4 307 1 1158 193 75 97 chr9 71068005 71068321 -46794306 - MLT1A1 LTR MaLR -56 309 1 2265 199 51 11 chr9 71068321 71068793 -46793834 - MLT1A1-int LTR MaLR 0 1735 1245 786 170 18 25 chr9 71068321 71068340 -46794287 - L1MCa LINE L1 -4138 2288 2270 * 1375 176 34 121 chr9 71068897 71069407 -46793220 - MLT1A1-int LTR MaLR -653 1082 415 639 88 0 0 chr9 71069409 71069500 -46793127 + AluY SINE Alu 216 306 -5 633 188 8 0 chr9 71069504 71069621 -46793006 - MLT1A1-int LTR MaLR -1328 407 290 690 207 83 0 chr9 71069626 71069795 -46792832 - L1MCa LINE L1 -6226 200 18 * 1941 255 71 94 chr9 71069794 71071126 -46791501 - L1 LINE L1 -2636 3510 2209 413 257 106 41 chr9 71071182 71071427 -46791200 + L1ME3A LINE L1 5905 6165 -5 312 267 38 19 chr9 71071587 71071692 -46790935 + L1ME3A LINE L1 6059 6165 -5 407 272 241 5 chr9 71071788 71071979 -46790648 - MIR SINE MIR -7 255 20 21 0 0 0 chr9 71073894 71073915 -46788712 + AT_rich Low_complexity Low_complexity 1 21 0 222 128 0 0 chr9 71077555 71077594 -46785033 + (CAGGG)n Simple_repeat Simple_repeat 3 41 0 201 217 43 72 chr9 71085133 71085202 -46777425 + MIR SINE MIR 111 177 -85 244 225 42 0 chr9 71085221 71085292 -46777335 + L1MB7 LINE L1 5537 5610 -568 2683 172 47 2 chr9 71085296 71085802 -46776825 + L1MB7 LINE L1 5647 6175 -9 634 216 93 5 chr9 71085932 71086126 -46776501 - MER20 DNA MER1_type -2 217 7 195 189 0 0 chr9 71088001 71088038 -46774589 + MIR SINE MIR 110 146 -62 266 260 94 39 chr9 71089503 71089630 -46772997 - MIR3 SINE MIR -68 140 7 192 77 0 0 chr9 71093555 71093581 -46769046 + (A)n Simple_repeat Simple_repeat 1 26 0 850 284 79 0 chr9 71093863 71094204 -46768423 + L1ME3A LINE L1 473 840 -5556 1450 254 101 37 chr9 71094207 71095018 -46767609 + L1ME3A LINE L1 1002 1864 -4532 * 2065 194 25 15 chr9 71095010 71095335 -46767292 + L1ME3A LINE L1 4637 4970 -1245 1999 92 50 7 chr9 71095335 71095616 -46767011 + AluSg SINE Alu 1 293 -17 2065 194 25 15 chr9 71095616 71095763 -46766864 + L1ME3A LINE L1 4970 5114 -1101 2428 55 0 0 chr9 71095765 71096058 -46766569 + AluY SINE Alu 1 293 -18 709 220 60 35 chr9 71096073 71096305 -46766322 + L1ME3A LINE L1 5809 6046 -193 2044 140 0 6 chr9 71096309 71096623 -46766004 + AluSx SINE Alu 1 312 0 3776 108 6 130 chr9 71098085 71098810 -46763817 + MER41B LTR ERV1 1 635 0 265 231 103 68 chr9 71099220 71099337 -46763290 + MIR SINE MIR 80 200 -62 274 266 92 0 chr9 71100139 71100248 -46762379 + MIR SINE MIR 2 120 -142 458 282 98 88 chr9 71102370 71102778 -46759849 + L1ME3 LINE L1 2830 3241 -2974 381 312 124 27 chr9 71104013 71104199 -46758428 + L1ME3 LINE L1 4423 4626 -1589 2035 179 127 26 chr9 71104354 71104454 -46758173 - L1MB7 LINE L1 -23 6161 6072 2400 75 3 0 chr9 71104454 71104762 -46757865 - AluY SINE Alu -2 309 1 2035 179 127 26 chr9 71104762 71105263 -46757364 - L1MB7 LINE L1 -112 6072 5447 1667 162 7 20 chr9 71105272 71105574 -46757053 - AluJb SINE Alu -14 298 1 213 345 42 25 chr9 71105613 71105732 -46756895 - MIR SINE MIR -38 224 104 574 279 75 19 chr9 71105830 71106112 -46756515 + L1ME3 LINE L1 5313 5609 -624 732 316 109 8 chr9 71106196 71106598 -46756029 + L1ME3 LINE L1 5786 6228 -3 2266 88 0 7 chr9 71106639 71106947 -46755680 + AluSc SINE Alu 1 306 -3 2223 91 7 7 chr9 71108329 71108637 -46753990 + AluSx SINE Alu 1 308 -4 308 267 35 12 chr9 71110487 71110573 -46752054 - MER5B DNA MER1_type -74 104 17 262 375 19 0 chr9 71110881 71110985 -46751642 - MIR SINE MIR -67 195 90 10519 149 65 40 chr9 71112261 71112986 -46749641 + L1MC3 LINE L1 5521 6227 -1558 1569 109 9 0 chr9 71112986 71113207 -46749420 - AluSg/x SINE Alu -6 304 82 1841 138 25 0 chr9 71113210 71113523 -46749104 - AluSx SINE Alu 0 312 1 10519 149 65 40 chr9 71113523 71113886 -46748741 + L1MC3 LINE L1 6228 6581 -1204 2298 91 0 0 chr9 71113886 71114184 -46748443 - AluSq SINE Alu -15 298 1 10519 149 65 40 chr9 71114184 71114565 -46748062 + L1MC3 LINE L1 6581 6951 -834 1406 201 45 7 chr9 71114565 71114853 -46747774 + AluJb SINE Alu 1 299 -13 10519 149 65 40 chr9 71114853 71115588 -46747039 + L1MC3 LINE L1 6951 7785 0 2422 65 0 3 chr9 71115611 71115918 -46746709 - AluY SINE Alu -5 306 1 2100 79 0 4 chr9 71115962 71116241 -46746386 + AluY SINE Alu 21 298 -13 240 152 22 0 chr9 71116609 71116655 -46745972 + L1MC/D LINE L1 5403 5449 -713 9252 41 2 2 chr9 71116658 71117729 -46744898 + MER11C LTR ERVK 1 1071 0 232 160 20 0 chr9 71118005 71118055 -46744572 - MIR SINE MIR -73 135 85 2528 43 0 0 chr9 71118340 71118640 -46743987 - AluY SINE Alu -11 300 1 2223 95 13 0 chr9 71118670 71118975 -46743652 + AluSg SINE Alu 1 309 -1 1803 142 10 3 chr9 71119131 71119419 -46743208 + AluSx SINE Alu 21 310 -2 336 280 16 47 chr9 71119431 71119624 -46743003 + L1MC5 LINE L1 7528 7714 -247 1174 83 0 67 chr9 71119624 71119804 -46742823 + AluY SINE Alu 132 299 -12 2156 95 0 0 chr9 71120001 71120312 -46742315 + AluSx SINE Alu 1 311 0 253 0 0 0 chr9 71120284 71120339 -46742288 + (TAA)n Simple_repeat Simple_repeat 2 56 0 2299 90 0 0 chr9 71120349 71120648 -46741979 + AluSx SINE Alu 1 299 -13 2388 66 0 10 chr9 71120648 71120951 -46741676 + AluSp SINE Alu 1 300 -13 780 176 8 0 chr9 71120956 71121087 -46741540 + FLAM_C SINE Alu 1 132 -1 23 0 0 0 chr9 71121087 71121110 -46741517 + AT_rich Low_complexity Low_complexity 1 23 0 231 290 47 56 chr9 71122590 71122697 -46739930 - MIR3 SINE MIR -11 197 92 292 298 134 29 chr9 71124328 71124499 -46738128 + L1MC/D LINE L1 5436 5624 -2184 256 299 62 5 chr9 71124517 71124622 -46738005 - MIR SINE MIR -63 145 49 400 285 53 14 chr9 71125509 71125657 -46736970 - MIR SINE MIR -52 156 33 23 0 0 0 chr9 71126295 71126318 -46736309 + GC_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr9 71126537 71126558 -46736069 + GC_rich Low_complexity Low_complexity 1 21 0 249 33 0 0 chr9 71126881 71126911 -46735716 + (CCG)n Simple_repeat Simple_repeat 2 31 0 31 68 0 0 chr9 71126920 71126979 -46735648 + GC_rich Low_complexity Low_complexity 1 59 0 25 0 0 0 chr9 71127024 71127049 -46735578 + GC_rich Low_complexity Low_complexity 1 25 0 259 255 225 13 chr9 71127623 71127680 -46734947 - L1MC4 LINE L1 -191 7851 7807 2616 192 132 2 chr9 71127680 71128249 -46734378 - MER73 LTR ERVL -1 643 1 259 255 225 13 chr9 71128249 71128405 -46734222 - L1MC4 LINE L1 -235 7807 7610 1878 250 116 8 chr9 71128419 71128686 -46733941 - L1MC4 LINE L1 -533 7509 7272 2169 85 9 38 chr9 71128686 71129004 -46733623 - AluSc SINE Alu 0 309 1 1878 250 116 8 chr9 71129004 71129375 -46733252 - L1MC4 LINE L1 -770 7272 6802 202 239 64 14 chr9 71129596 71129694 -46732933 - MIR SINE MIR -103 105 1 197 276 67 57 chr9 71129942 71130047 -46732580 - L2 LINE L2 -219 3053 2948 260 317 30 10 chr9 71130068 71130169 -46732458 - MIR SINE MIR -1 261 159 633 257 23 45 chr9 71130248 71130521 -46732106 - LTR1 LTR ERV1 -562 223 1 265 287 161 14 chr9 71130521 71130744 -46731883 + L2 LINE L2 2606 2861 -453 3034 131 67 49 chr9 71130754 71130914 -46731713 - MER4B LTR ERV1 0 610 454 4276 125 11 3 chr9 71130914 71131104 -46731523 + MER41B LTR ERV1 1 188 -447 2188 103 0 7 chr9 71131104 71131414 -46731213 + AluSx SINE Alu 1 308 -4 4276 125 11 3 chr9 71131414 71131853 -46730774 + MER41B LTR ERV1 188 635 0 3034 131 67 49 chr9 71131853 71132287 -46730340 - MER4B LTR ERV1 -156 454 5 238 268 21 52 chr9 71132330 71132427 -46730200 + L2 LINE L2 3131 3224 -89 1945 113 10 45 chr9 71133060 71133370 -46729257 + AluSx SINE Alu 1 299 -13 1747 131 17 39 chr9 71133436 71133742 -46728885 + PABL_B LTR ERV1 1 435 -225 1430 106 0 0 chr9 71133744 71133932 -46728695 - AluSx SINE Alu -122 190 3 1554 120 12 19 chr9 71133934 71134192 -46728435 + PABL_B LTR ERV1 412 667 0 590 289 30 35 chr9 71134214 71134446 -46728181 - MIR SINE MIR -10 252 22 2202 163 33 72 chr9 71134899 71135057 -46727570 - L1MB4 LINE L1 -297 5883 5720 2282 87 7 0 chr9 71135057 71135355 -46727272 - AluY SINE Alu -11 300 1 2202 163 33 72 chr9 71135355 71135614 -46727013 - L1MB4 LINE L1 -460 5720 5491 2183 86 0 0 chr9 71135614 71135927 -46726700 + AluY SINE Alu 1 313 0 2202 163 33 72 chr9 71135927 71136074 -46726553 - L1MB4 LINE L1 -689 5491 5340 1043 247 68 19 chr9 71136094 71136418 -46726209 - L1M4b LINE L1 -5240 1619 1280 1977 163 10 0 chr9 71136885 71137191 -46725436 + AluSx SINE Alu 1 309 -3 1993 59 105 42 chr9 71137279 71137565 -46725062 + AluY SINE Alu 1 304 -7 234 91 0 0 chr9 71137718 71137751 -46724876 + (TTCC)n Simple_repeat Simple_repeat 1 33 0 1811 183 0 0 chr9 71137751 71138052 -46724575 - AluJb SINE Alu -11 301 1 258 238 0 0 chr9 71138059 71138122 -46724505 - L1M4b LINE L1 -6383 472 410 2707 45 0 0 chr9 71138150 71138460 -46724167 - AluY SINE Alu -1 310 1 649 138 110 0 chr9 71138547 71138656 -46723971 - AluJb SINE Alu -187 125 5 2163 63 63 11 chr9 71138689 71138976 -46723651 + AluY SINE Alu 1 302 -9 1647 212 45 184 chr9 71138981 71139869 -46722758 + L1ME1 LINE L1 5188 5935 -231 2387 93 3 0 chr9 71139869 71140179 -46722448 - AluY SINE Alu 0 311 1 1647 212 45 184 chr9 71140179 71140283 -46722344 + L1ME1 LINE L1 5935 6052 -114 2395 87 3 0 chr9 71140284 71140582 -46722045 - AluSp SINE Alu -12 301 3 2500 73 7 0 chr9 71140613 71140915 -46721712 + AluY SINE Alu 1 304 -7 1323 185 33 37 chr9 71140920 71141190 -46721437 + L1M4 LINE L1 600 868 -5674 1743 179 58 3 chr9 71141190 71141519 -46721108 + MLT2C1 LTR ERVL 1 347 -50 216 135 0 0 chr9 71141519 71141556 -46721071 + (TCTA)n Simple_repeat Simple_repeat 1 37 0 294 171 3 0 chr9 71141568 71141625 -46721002 + MLT2B3 LTR ERVL 458 554 0 2328 250 53 59 chr9 71141625 71141685 -46720942 + ERVL LTR ERVL 1 60 -5594 2176 133 0 9 chr9 71141685 71142000 -46720627 - AluSx SINE Alu 0 312 1 2328 250 53 59 chr9 71142000 71142241 -46720386 + ERVL LTR ERVL 60 301 -5353 1506 203 117 14 chr9 71142241 71142600 -46720027 + MSTD LTR MaLR 1 396 0 2328 250 53 59 chr9 71142600 71142912 -46719715 + ERVL LTR ERVL 301 613 -5041 2382 151 23 21 chr9 71142912 71143343 -46719284 + MSTB1 LTR MaLR 1 432 0 2328 250 53 59 chr9 71143343 71143704 -46718923 + ERVL LTR ERVL 613 996 -4658 8240 209 20 6 chr9 71143706 71145272 -46717355 + ERVL LTR ERVL 1113 2700 -3064 1651 133 16 0 chr9 71145480 71145728 -46716899 - LOR1b LTR ERV1 0 461 210 1753 138 4 34 chr9 71145755 71146023 -46716604 - AluSx SINE Alu -52 260 1 1317 221 9 35 chr9 71146081 71146233 -46716394 - L1MEc LINE L1 -3314 2901 2746 2289 101 0 20 chr9 71146233 71146539 -46716088 + AluSq SINE Alu 1 300 -13 2524 47 14 0 chr9 71146540 71146836 -46715791 + AluY SINE Alu 2 301 -10 1317 221 9 35 chr9 71146836 71147020 -46715607 - L1MEc LINE L1 -3468 2747 2572 3776 237 77 73 chr9 71147030 71147073 -46715554 - L1MEc LINE L1 -4570 1645 1604 2418 59 0 26 chr9 71147073 71147376 -46715251 + AluY SINE Alu 1 295 -16 3776 237 77 73 chr9 71147376 71147706 -46714921 - L1MEc LINE L1 -4611 1604 1277 2274 101 17 3 chr9 71147706 71148002 -46714625 - AluSx SINE Alu -12 300 1 3776 237 77 73 chr9 71148002 71148161 -46714466 - L1MEc LINE L1 -4938 1277 1120 805 163 230 0 chr9 71148161 71148339 -46714288 - MER20 DNA MER1_type 0 219 1 3776 237 77 73 chr9 71148339 71149142 -46713485 - L1MEc LINE L1 -5095 1120 477 2068 133 0 9 chr9 71149142 71149457 -46713170 - AluSx SINE Alu 0 312 1 3776 237 77 73 chr9 71149457 71149926 -46712701 - L1MEc LINE L1 -5738 477 11 2430 44 6 60 chr9 71149997 71150312 -46712315 + AluY SINE Alu 1 298 -13 2252 89 4 0 chr9 71150546 71150872 -46711755 + AluSc SINE Alu 1 327 0 950 151 20 108 chr9 71151790 71152041 -46710586 - MLT1B LTR MaLR -8 379 138 23 33 0 0 chr9 71152045 71152075 -46710552 + AT_rich Low_complexity Low_complexity 1 30 0 1822 144 19 0 chr9 71152076 71152224 -46710403 - AluSx SINE Alu -29 283 126 2160 112 7 3 chr9 71152224 71152527 -46710100 - AluY SINE Alu -7 304 1 1822 144 19 0 chr9 71152527 71152648 -46709979 - AluSx SINE Alu -186 126 9 5235 244 52 58 chr9 71152732 71154553 -46708074 + MER21-int LTR ERV1 1684 3543 -648 1253 108 0 0 chr9 71154571 71154728 -46707899 - AluSg SINE Alu -153 157 1 874 276 15 19 chr9 71154729 71154997 -46707630 + MER21-int LTR ERV1 3538 3804 -387 1367 192 10 38 chr9 71155036 71155328 -46707299 + MER21-int LTR ERV1 3815 4098 -93 2308 97 7 0 chr9 71155984 71156282 -46706345 - AluSq SINE Alu -13 300 1 2309 94 0 3 chr9 71156825 71157122 -46705505 - AluSg SINE Alu -14 296 1 335 288 104 0 chr9 71159678 71159803 -46702824 + MIR SINE MIR 90 227 -35 244 254 33 74 chr9 71160040 71160162 -46702465 - MIR SINE MIR -5 257 141 569 203 24 16 chr9 71161485 71161608 -46701019 - LTR51 LTR ERV1 0 671 548 * 1661 197 13 3 chr9 71161579 71161894 -46700733 - MER65C LTR ERV1 -116 345 28 3673 69 27 0 chr9 71161894 71162371 -46700256 + L1PA8 LINE L1 5683 6172 0 210 37 0 0 chr9 71162399 71162426 -46700201 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 240 94 0 0 chr9 71162426 71162458 -46700169 - MER65C LTR ERV1 -429 32 1 2240 104 3 7 chr9 71162665 71162974 -46699653 - AluSg SINE Alu -2 308 1 2045 171 32 5 chr9 71163130 71163510 -46699117 - MLT1B LTR MaLR 0 390 1 1327 138 9 14 chr9 71163928 71164146 -46698481 - L1PB3 LINE L1 -5 6149 5933 243 0 0 0 chr9 71164971 71164998 -46697629 + (TTTTTA)n Simple_repeat Simple_repeat 2 28 0 2528 58 3 0 chr9 71165069 71165378 -46697249 - AluY SINE Alu -1 310 1 416 184 11 11 chr9 71165951 71166130 -46696497 + (TG)n Simple_repeat Simple_repeat 1 179 0 256 156 49 30 chr9 71166231 71166466 -46696161 + (TG)n Simple_repeat Simple_repeat 1 239 0 374 129 54 14 chr9 71166479 71166626 -46696001 + (TG)n Simple_repeat Simple_repeat 1 153 0 197 193 56 6 chr9 71166667 71166828 -46695799 + (TG)n Simple_repeat Simple_repeat 1 169 0 219 213 27 27 chr9 71166849 71166924 -46695703 + (TG)n Simple_repeat Simple_repeat 2 76 0 444 190 46 35 chr9 71166942 71167116 -46695511 + (TG)n Simple_repeat Simple_repeat 2 177 0 234 121 44 22 chr9 71167129 71167220 -46695407 + (TG)n Simple_repeat Simple_repeat 2 94 0 576 278 85 0 chr9 71167662 71167874 -46694753 - MIR SINE MIR 0 262 33 22 35 0 0 chr9 71168900 71168929 -46693698 + AT_rich Low_complexity Low_complexity 1 29 0 898 238 58 0 chr9 71168979 71169219 -46693408 + L1ME LINE L1 5143 5396 -750 34 42 0 0 chr9 71172971 71173019 -46689608 + AT_rich Low_complexity Low_complexity 1 48 0 242 143 31 61 chr9 71173060 71173158 -46689469 + (TTATA)n Simple_repeat Simple_repeat 1 95 0 421 284 62 6 chr9 71173345 71173521 -46689106 + L1ME LINE L1 5491 5676 -445 245 300 20 40 chr9 71174709 71174859 -46687768 - MER104 DNA Tc2 0 180 34 1555 194 10 7 chr9 71174960 71175253 -46687374 + AluJo SINE Alu 1 294 -18 505 276 20 13 chr9 71175256 71175408 -46687219 - MIR SINE MIR -10 252 100 21 36 0 0 chr9 71176220 71176248 -46686379 + AT_rich Low_complexity Low_complexity 1 28 0 195 295 46 55 chr9 71177213 71177342 -46685285 - MER5A DNA MER1_type 0 189 46 722 200 0 8 chr9 71177355 71177485 -46685142 + FLAM_A SINE Alu 1 129 -4 22 0 0 0 chr9 71177488 71177510 -46685117 + AT_rich Low_complexity Low_complexity 1 22 0 387 323 24 0 chr9 71178513 71178637 -46683990 + MER102a DNA MER1_type 203 329 -1 2330 86 0 0 chr9 71178924 71179215 -46683412 + AluY SINE Alu 1 291 -20 23 33 0 0 chr9 71179450 71179480 -46683147 + AT_rich Low_complexity Low_complexity 1 30 0 191 333 80 13 chr9 71180030 71180105 -46682522 - L2 LINE L2 -50 3222 3143 183 114 0 0 chr9 71180520 71180555 -46682072 + (T)n Simple_repeat Simple_repeat 1 35 0 390 91 0 0 chr9 71180846 71180901 -46681726 + (TTA)n Simple_repeat Simple_repeat 2 56 0 475 172 111 0 chr9 71181759 71181858 -46680769 - FLAM_C SINE Alu -3 140 31 2047 37 8 0 chr9 71182684 71182927 -46679700 - L1PA4 LINE L1 0 6155 5911 471 248 0 0 chr9 71183053 71183158 -46679469 + U6 snRNA snRNA 2 106 -1 22 56 0 0 chr9 71184247 71184283 -46678344 + AT_rich Low_complexity Low_complexity 1 36 0 2107 126 20 0 chr9 71184426 71184720 -46677907 + AluSx SINE Alu 1 300 -12 48 0 0 0 chr9 71184754 71184802 -46677825 + AT_rich Low_complexity Low_complexity 1 48 0 2375 175 11 11 chr9 71185067 71185501 -46677126 - Tigger2a DNA MER2_type 0 434 1 2037 141 3 0 chr9 71185868 71186165 -46676462 + AluSx SINE Alu 1 298 -14 29 28 0 0 chr9 71186231 71186267 -46676360 + AT_rich Low_complexity Low_complexity 1 36 0 231 250 67 0 chr9 71187203 71187263 -46675364 - MLT1L LTR MaLR -6 609 546 649 308 137 35 chr9 71187308 71187494 -46675133 - MLT1L LTR MaLR -167 448 282 2030 139 0 0 chr9 71187494 71187789 -46674838 - AluSc SINE Alu -14 295 1 649 308 137 35 chr9 71187789 71188005 -46674622 - MLT1L LTR MaLR -333 282 5 420 119 134 0 chr9 71188088 71188155 -46674472 - MER58A DNA MER1_type 0 224 149 699 271 7 0 chr9 71188211 71188362 -46674265 - MER58A DNA MER1_type 0 155 4 1315 233 31 21 chr9 71188852 71189139 -46673488 + AluJo SINE Alu 2 291 -11 1051 176 56 87 chr9 71189401 71189724 -46672903 + L1MC4 LINE L1 7730 8042 0 247 245 50 88 chr9 71190128 71190287 -46672340 + L1MC/D LINE L1 5740 5892 -1916 1511 189 0 25 chr9 71190666 71190946 -46671681 - AluJo SINE Alu -31 281 9 3914 193 65 4 chr9 71191013 71191719 -46670908 + L1MA4A LINE L1 3 751 -6098 2205 163 27 0 chr9 71191720 71192125 -46670502 + L1MA4A LINE L1 4883 5298 -1550 25 0 0 0 chr9 71192129 71192154 -46670473 + AT_rich Low_complexity Low_complexity 1 25 0 6604 62 11 43 chr9 71192154 71193128 -46669499 - SVA Other Other -11 1375 433 1137 94 11 66 chr9 71193146 71193433 -46669194 - SVA Other Other -520 866 596 5640 71 17 52 chr9 71193461 71194532 -46668095 - SVA Other Other -524 866 53 189 0 0 0 chr9 71194532 71194553 -46668074 + (GGGAGA)n Simple_repeat Simple_repeat 3 23 0 5769 134 68 28 chr9 71194554 71195320 -46667307 + L1MA4A LINE L1 5285 6019 -986 2343 96 0 0 chr9 71195320 71195611 -46667016 + AluSx SINE Alu 3 293 -19 5769 134 68 28 chr9 71195611 71195811 -46666816 + L1MA4A LINE L1 6019 6210 -795 2660 132 81 34 chr9 71195811 71196281 -46666346 + LTR22B LTR ERVK 1 492 0 5769 134 68 28 chr9 71196281 71196956 -46665671 + L1MA4A LINE L1 6210 7003 -2 2588 71 0 0 chr9 71197119 71197427 -46665200 - AluY SINE Alu -3 308 1 3266 238 51 14 chr9 71197779 71198820 -46663807 - L1ME1 LINE L1 -5 6161 5083 183 80 0 0 chr9 71198820 71198845 -46663782 + (T)n Simple_repeat Simple_repeat 1 25 0 3320 71 27 63 chr9 71200610 71201088 -46661539 + L1PA13 LINE L1 5702 6162 -1 2519 60 0 3 chr9 71201097 71201399 -46661228 + AluSc SINE Alu 1 301 -8 2240 119 0 0 chr9 71201844 71202146 -46660481 + AluSx SINE Alu 1 302 -10 292 369 57 0 chr9 71202165 71202306 -46660321 + L1MC/D LINE L1 5506 5654 -2154 1693 161 10 26 chr9 71202450 71202754 -46659873 + AluJo SINE Alu 1 299 -13 209 205 0 0 chr9 71202772 71202811 -46659816 + (TATG)n Simple_repeat Simple_repeat 2 40 0 34 62 0 12 chr9 71203627 71203657 -46658970 + AT_rich Low_complexity Low_complexity 1 30 -49 1591 167 20 33 chr9 71203657 71203801 -46658826 + AluJo SINE Alu 1 145 -167 2276 97 0 13 chr9 71203801 71204101 -46658526 + AluSq SINE Alu 1 296 -17 1591 167 20 33 chr9 71204101 71204255 -46658372 + AluJo SINE Alu 145 295 -17 34 62 0 12 chr9 71204255 71204304 -46658323 + AT_rich Low_complexity Low_complexity 30 79 0 2171 114 0 7 chr9 71204378 71204677 -46657950 + AluSx SINE Alu 13 309 -3 2567 62 0 0 chr9 71205215 71205521 -46657106 - AluY SINE Alu -5 306 1 699 268 61 83 chr9 71206399 71206974 -46655653 + L1MEc LINE L1 1256 1817 -4579 621 229 90 11 chr9 71207138 71207417 -46655210 + L1MEc LINE L1 2403 2703 -3512 1779 142 0 69 chr9 71210685 71211037 -46651590 + AluSx SINE Alu 1 331 0 2340 89 3 0 chr9 71211059 71211352 -46651275 + AluSp SINE Alu 1 294 -19 203 217 60 0 chr9 71211390 71211473 -46651154 + (TA)n Simple_repeat Simple_repeat 1 88 0 1945 132 0 17 chr9 71211583 71211870 -46650757 + AluJo SINE Alu 1 282 -30 2044 153 3 0 chr9 71211880 71212180 -46650447 - AluSx SINE Alu -11 301 1 474 252 8 23 chr9 71212224 71212355 -46650272 - MIR SINE MIR -89 173 45 1988 115 0 70 chr9 71212663 71212976 -46649651 - AluSx SINE Alu -21 291 1 1626 174 100 3 chr9 71213334 71213645 -46648982 + MER58B DNA MER1_type 1 341 0 1369 94 12 2 chr9 71214363 71214608 -46648019 - AluYa5 SINE Alu -2 309 2 2382 101 0 0 chr9 71214609 71214916 -46647711 - AluSq SINE Alu -6 307 1 1275 226 79 2 chr9 71215454 71215883 -46646744 - LTR52-int LTR ERVL -3020 536 2 1305 211 137 3 chr9 71215894 71216236 -46646391 - LTR52 LTR ERVL -16 405 18 536 284 132 42 chr9 71216247 71216515 -46646112 + L1ME3A LINE L1 5386 5708 -462 2355 93 0 0 chr9 71216515 71216817 -46645810 + AluY SINE Alu 1 302 -9 536 284 132 42 chr9 71216817 71216956 -46645671 + L1ME3A LINE L1 5708 5833 -337 30 77 0 0 chr9 71218401 71218466 -46644161 + AT_rich Low_complexity Low_complexity 1 65 0 1024 167 27 66 chr9 71218521 71218810 -46643817 + L1MB8 LINE L1 5254 5553 -625 2360 65 0 10 chr9 71218810 71219103 -46643524 - AluY SINE Alu -21 290 1 1024 167 27 66 chr9 71219103 71219145 -46643482 + L1MB8 LINE L1 5553 6151 -27 1746 135 15 0 chr9 71219838 71220097 -46642530 - AluJb SINE Alu -10 302 40 256 265 112 66 chr9 71220276 71220563 -46642064 + L1MDa LINE L1 1293 1592 -4948 369 258 134 39 chr9 71220629 71220923 -46641704 + L1MDa LINE L1 2200 2542 -4179 2258 85 0 3 chr9 71220923 71221230 -46641397 + AluY SINE Alu 1 306 0 369 258 134 39 chr9 71221230 71221322 -46641305 + L1MDa LINE L1 2542 2624 -4097 * 572 272 67 91 chr9 71221306 71221648 -46640979 + L1ME LINE L1 1 334 -6206 2660 168 76 84 chr9 71221780 71222387 -46640240 - MER77 LTR ERV1 -3 602 1 2616 51 0 6 chr9 71222400 71222712 -46639915 + AluY SINE Alu 1 310 -1 2794 216 26 49 chr9 71223136 71224172 -46638455 + L1ME LINE L1 891 1904 -4636 5621 67 5 0 chr9 71224847 71225518 -46637109 + L1PA10 LINE L1 5494 6167 -1 719 269 134 60 chr9 71226186 71226633 -46635994 + MLT1J LTR MaLR 1 480 -31 259 272 116 14 chr9 71226730 71226877 -46635750 + L1ME LINE L1 2794 2955 -3585 300 91 0 0 chr9 71227108 71227152 -46635475 + (GA)n Simple_repeat Simple_repeat 2 45 0 938 130 8 0 chr9 71227237 71227368 -46635259 + FLAM_C SINE Alu 1 132 -11 763 263 30 30 chr9 71227369 71227700 -46634927 + L1ME LINE L1 5667 5997 -567 1710 160 0 21 chr9 71227704 71227991 -46634636 + AluJo SINE Alu 1 281 -31 6172 73 7 4 chr9 71228316 71229147 -46633480 + L1PA8 LINE L1 5236 6068 -104 937 61 43 0 chr9 71229147 71229262 -46633365 + AluSp SINE Alu 1 120 -193 858 113 0 30 chr9 71229262 71229276 -46633351 + L1PA7 LINE L1 6026 6039 -115 2059 101 0 17 chr9 71229276 71229604 -46633023 + AluY SINE Alu 1 323 0 858 113 0 30 chr9 71229604 71229721 -46632906 + L1PA7 LINE L1 6039 6154 0 759 241 6 0 chr9 71229821 71229979 -46632648 + MER77 LTR ERV1 443 601 -4 585 242 8 8 chr9 71230020 71230144 -46632483 - MLT1D LTR MaLR -97 408 285 526 197 221 0 chr9 71230144 71230271 -46632356 - MLT1D LTR MaLR -49 456 302 522 229 46 23 chr9 71230418 71230549 -46632078 + MIR SINE MIR 20 153 -109 2437 127 43 38 chr9 71230559 71230972 -46631655 - MSTB1 LTR MaLR 0 432 57 764 209 16 0 chr9 71230972 71231101 -46631526 - FLAM_A SINE Alu -1 132 2 2437 127 43 38 chr9 71231101 71231159 -46631468 - MSTB1 LTR MaLR -375 57 1 267 191 146 0 chr9 71231160 71231249 -46631378 + MIR SINE MIR 160 261 -1 429 269 42 39 chr9 71231258 71231518 -46631109 + HAL1 LINE L1 1930 2190 -317 894 108 0 8 chr9 71231519 71231639 -46630988 + AluJb SINE Alu 1 119 -193 195 42 0 0 chr9 71231639 71231663 -46630964 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 762 230 60 53 chr9 71231663 71231981 -46630646 + HAL1 LINE L1 2180 2499 -8 5925 241 67 26 chr9 71232108 71233814 -46628813 + L1MDa LINE L1 21 1797 -4743 1147 179 19 125 chr9 71233825 71234027 -46628600 + MLT1D LTR MaLR 12 159 -346 2347 84 3 7 chr9 71234027 71234337 -46628290 + AluSp SINE Alu 1 309 -4 1147 179 19 125 chr9 71234337 71234503 -46628124 + MLT1D LTR MaLR 159 341 -164 747 45 0 0 chr9 71234503 71234592 -46628035 + AluSp/q SINE Alu 217 305 -8 1243 215 34 37 chr9 71234594 71234920 -46627707 + MLT1D LTR MaLR 179 503 -2 775 105 49 56 chr9 71234934 71235077 -46627550 + L1MDa LINE L1 1799 1940 -4600 1395 192 76 25 chr9 71235077 71235225 -46627402 + MLT1B LTR MaLR 19 158 -232 216 0 0 0 chr9 71235225 71235249 -46627378 + (CAGG)n Simple_repeat Simple_repeat 2 25 0 1395 192 76 25 chr9 71235249 71235454 -46627173 + MLT1B LTR MaLR 158 390 0 1217 252 15 21 chr9 71235475 71235812 -46626815 + L1M4 LINE L1 3371 3705 -2441 * 1331 189 37 52 chr9 71235793 71236195 -46626432 + L1M4 LINE L1 3563 3958 -2188 418 301 19 0 chr9 71236202 71236305 -46626322 + MER5A DNA MER1_type 8 112 -77 2435 93 0 0 chr9 71236378 71236691 -46625936 - AluSq SINE Alu 0 313 1 290 310 17 0 chr9 71237286 71237402 -46625225 + L1ME LINE L1 5672 5789 -332 181 303 99 19 chr9 71237614 71237776 -46624851 + L2 LINE L2 706 880 -2434 542 293 141 72 chr9 71238342 71239645 -46622982 + L1MDa LINE L1 2446 3882 -2658 3675 228 80 47 chr9 71240398 71241875 -46620752 + L1M4 LINE L1 2614 4139 -2007 1560 216 69 67 chr9 71241876 71242354 -46620273 + MER31A LTR ERV1 1 479 -6 1562 242 99 41 chr9 71242368 71242659 -46619968 + L1M4 LINE L1 4680 4953 -1193 2280 74 0 3 chr9 71242659 71242958 -46619669 + AluY SINE Alu 1 298 -13 1562 242 99 41 chr9 71242958 71243320 -46619307 + L1M4 LINE L1 4953 5371 -775 472 108 24 12 chr9 71243324 71243407 -46619220 + LTR56 LTR ERV1 1 84 -361 2305 72 0 0 chr9 71243415 71243706 -46618921 + AluY SINE Alu 9 299 -12 324 51 0 0 chr9 71243706 71243745 -46618882 + L1PA11 LINE L1 6119 6157 -17 2316 55 10 19 chr9 71243823 71244134 -46618493 + AluY SINE Alu 1 308 -3 210 37 0 0 chr9 71245457 71245484 -46617143 + (TG)n Simple_repeat Simple_repeat 2 28 0 1837 128 11 3 chr9 71245483 71245797 -46616830 - AluSx SINE Alu 0 316 1 882 193 6 0 chr9 71250500 71250676 -46611951 - MSTA-int LTR MaLR -1447 204 28 352 235 54 34 chr9 71250674 71250823 -46611804 + THE1-int LTR MaLR 466 617 -963 * 704 244 62 19 chr9 71250847 71251077 -46611550 - MSTA LTR MaLR -62 302 79 450 245 31 46 chr9 71251090 71251315 -46611312 + THE1-int LTR MaLR 907 1178 -402 276 214 18 0 chr9 71251313 71251369 -46611258 - MST-int LTR MaLR -616 1035 979 * 389 219 9 19 chr9 71251458 71251563 -46611064 - MSTA LTR MaLR -324 104 1 1454 230 3 32 chr9 71251563 71251907 -46610720 - MSTA-int LTR MaLR 0 1651 1318 331 246 0 0 chr9 71251914 71251975 -46610652 - MSTA LTR MaLR -273 155 95 336 220 80 40 chr9 71252044 71252144 -46610483 - MSTA LTR MaLR -324 104 1 6386 223 58 19 chr9 71252144 71253707 -46608920 - MSTA-int LTR MaLR 0 1651 28 569 230 26 26 chr9 71253705 71253857 -46608770 + THE1-int LTR MaLR 466 617 -963 * 1198 211 44 17 chr9 71253873 71254167 -46608460 - MSTA LTR MaLR -52 376 75 497 203 55 39 chr9 71254200 71254328 -46608299 + THE1-int LTR MaLR 1062 1191 -389 287 130 22 0 chr9 71254316 71254362 -46608265 - THE1-int LTR MaLR -613 967 921 * 399 261 8 67 chr9 71254380 71254514 -46608113 - MSTA LTR MaLR -302 126 1 1281 155 41 16 chr9 71254514 71254759 -46607868 - MSTA-int LTR MaLR 0 1651 1401 * 1395 165 8 0 chr9 71254756 71255004 -46607623 - MSTA-int LTR MaLR -1401 250 1 1503 217 50 25 chr9 71255021 71255380 -46607247 - MSTA LTR MaLR -60 368 1 1521 135 66 100 chr9 71257345 71257797 -46604830 + SN5 Other centromeric 1 437 -18 206 217 0 17 chr9 71258040 71258100 -46604527 + (TATG)n Simple_repeat Simple_repeat 1 59 0 280 242 0 19 chr9 71258485 71258594 -46604033 + HSAT5 Satellite Satellite 1 106 -7 277 258 16 0 chr9 71258615 71258677 -46603950 + HSAT5 Satellite Satellite 23 85 -1 345 234 40 19 chr9 71258879 71259064 -46603563 + HSAT5 Satellite Satellite 1 188 -1 974 222 238 20 chr9 71259626 71260072 -46602555 + L1MC4 LINE L1 6819 7361 -681 21 36 0 0 chr9 71260340 71260368 -46602259 + AT_rich Low_complexity Low_complexity 1 28 0 202 348 76 31 chr9 71260953 71261224 -46601403 - L2 LINE L2 -227 3045 2745 21 0 0 0 chr9 71261658 71261679 -46600948 + AT_rich Low_complexity Low_complexity 1 21 0 949 125 0 0 chr9 71262036 71262172 -46600455 + AluSc SINE Alu 1 136 -173 45650 32 4 1 chr9 71262179 71268146 -46594481 - L1PA3 LINE L1 -167 5988 8 3229 120 22 30 chr9 71268183 71268259 -46594368 - MER41B-int LTR ERV1 -3276 2670 2595 2012 106 0 35 chr9 71268259 71268571 -46594056 - AluSx SINE Alu -11 301 1 3229 120 22 30 chr9 71268571 71269002 -46593625 - MER41B-int LTR ERV1 -3351 2595 2167 878 180 0 39 chr9 71268998 71269176 -46593451 - MER41B-int LTR ERV1 -3929 2017 1847 * 3088 132 13 19 chr9 71269154 71269631 -46592996 - MER41B-int LTR ERV1 -4328 1618 1145 4359 129 37 16 chr9 71269633 71269815 -46592812 - MER41B-int LTR ERV1 -5127 819 642 1865 143 10 0 chr9 71269815 71270122 -46592505 + AluSx SINE Alu 1 310 -2 4359 129 37 16 chr9 71270122 71270795 -46591832 - MER41B-int LTR ERV1 -5304 642 1 1081 99 7 0 chr9 71270795 71270946 -46591681 - MER41B LTR ERV1 0 635 484 443 68 0 0 chr9 71270966 71271025 -46591602 + MER75B DNA T2_type 52 110 -133 1311 117 11 0 chr9 71271026 71271214 -46591413 - AluSx SINE Alu -122 190 1 308 29 0 0 chr9 71271215 71271250 -46591377 + MER1B DNA MER1_type 232 266 -73 2328 77 0 0 chr9 71271956 71272254 -46590373 - AluY SINE Alu -13 298 1 596 250 15 49 chr9 71272623 71272827 -46589800 - L1MC4 LINE L1 -1137 6905 6709 1664 264 92 36 chr9 71272836 71272889 -46589738 + L1MC4a LINE L1 5254 5303 -2505 1359 190 67 30 chr9 71272889 71273189 -46589438 + AluJo SINE Alu 1 311 -1 1664 264 92 36 chr9 71273189 71273810 -46588817 + L1MC4a LINE L1 5303 5966 -1842 188 259 222 0 chr9 71380672 71380753 -46481874 - L2 LINE L2 -5 3267 3169 557 310 87 33 chr9 71380786 71381063 -46481564 - L2 LINE L2 -557 2757 2496 2005 109 25 7 chr9 71381063 71381348 -46481279 + AluSx SINE Alu 3 292 -20 2385 75 3 0 chr9 71381348 71381654 -46480973 + AluSc SINE Alu 1 307 -2 557 310 87 33 chr9 71381654 71381859 -46480768 - L2 LINE L2 -817 2497 2248 21 36 0 0 chr9 71383145 71383173 -46479454 + AT_rich Low_complexity Low_complexity 1 28 0 5662 166 55 9 chr9 71383185 71384697 -46477930 + L1MC2 LINE L1 4755 6344 0 2429 74 3 3 chr9 71384731 71385041 -46477586 + AluSq SINE Alu 1 310 -3 363 288 22 22 chr9 71385710 71385849 -46476778 - MLT1L LTR MaLR -133 482 344 311 269 70 64 chr9 71386675 71386846 -46475781 - L1MC4 LINE L1 -367 7675 7504 1971 111 31 3 chr9 71386846 71387135 -46475492 - AluSx SINE Alu -15 297 1 232 333 11 0 chr9 71387360 71387447 -46475180 - MIR SINE MIR -116 146 59 2301 72 3 10 chr9 71388931 71389237 -46473390 + AluY SINE Alu 1 304 -7 402 74 0 0 chr9 71391631 71391685 -46470942 + (TG)n Simple_repeat Simple_repeat 2 55 0 666 222 17 17 chr9 71392864 71393044 -46469583 + MLT1D LTR MaLR 41 220 -285 229 200 46 31 chr9 71395357 71395422 -46467205 - MIR3 SINE MIR -36 172 107 198 0 0 0 chr9 71397950 71397972 -46464655 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 545 237 90 45 chr9 71397975 71398091 -46464536 - MER33 DNA MER1_type -2328 257 148 2357 79 0 0 chr9 71398091 71398383 -46464244 - AluSc SINE Alu -17 292 1 545 237 90 45 chr9 71398383 71398511 -46464116 - MER33 DNA MER1_type -2437 148 2 193 275 33 44 chr9 71401331 71401422 -46461205 - MIR SINE MIR -90 172 83 677 315 125 8 chr9 71402523 71403153 -46459474 + Charlie2 DNA MER1_type 2051 2786 -76 931 172 6 6 chr9 71403306 71403463 -46459164 - AluSg/x SINE Alu -23 287 131 2286 86 3 0 chr9 71403817 71404108 -46458519 - AluSq SINE Alu -21 292 1 1801 129 18 7 chr9 71406243 71406522 -46456105 + AluJo SINE Alu 1 282 -30 435 38 0 0 chr9 71407031 71407084 -46455543 + (TTGTG)n Simple_repeat Simple_repeat 5 57 0 229 304 223 13 chr9 71407090 71407544 -46455083 - HAL1 LINE L1 -795 1712 1164 1509 270 134 28 chr9 71407602 71408244 -46454383 - L1ME2 LINE L1 -6 6158 5422 2369 54 10 0 chr9 71408244 71408538 -46454089 - AluY SINE Alu -14 297 1 1509 270 134 28 chr9 71408538 71408789 -46453838 - L1ME2 LINE L1 -742 5422 5199 787 148 8 0 chr9 71408802 71408924 -46453703 - FLAM_A SINE Alu -10 123 1 360 285 83 28 chr9 71409076 71409220 -46453407 - HAL1 LINE L1 -1433 1074 923 196 282 51 26 chr9 71412847 71412925 -46449702 + L2 LINE L2 3007 3086 -186 196 103 0 0 chr9 71413475 71413504 -46449123 + MIR SINE MIR 120 148 -114 604 162 0 10 chr9 71414012 71414111 -46448516 + FLAM_A SINE Alu 42 139 -3 205 89 44 22 chr9 71414118 71414163 -46448464 + GA-rich Low_complexity Low_complexity 1 46 0 438 182 39 0 chr9 71414164 71414241 -46448386 + AluJb SINE Alu 121 200 -112 291 322 157 16 chr9 71414520 71414641 -46447986 + MIR SINE MIR 37 174 -88 489 330 48 58 chr9 71415390 71415453 -46447174 - L1MCa LINE L1 -4251 2356 2294 2183 92 3 0 chr9 71415453 71415760 -46446867 + AluSp SINE Alu 1 308 0 489 330 48 58 chr9 71415760 71415986 -46446641 - L1MCa LINE L1 -4313 2294 2069 405 276 95 72 chr9 71416014 71416223 -46446404 - L1MCa LINE L1 -4596 2011 1808 2227 110 0 0 chr9 71416223 71416549 -46446078 - AluSx SINE Alu 0 312 1 405 276 95 72 chr9 71416549 71416814 -46445813 - L1MCa LINE L1 -4799 1808 1327 1176 202 10 0 chr9 71416822 71417051 -46445576 - AluJo SINE Alu 0 306 76 1939 110 43 10 chr9 71417057 71417357 -46445270 - AluSx SINE Alu -2 310 1 911 291 96 63 chr9 71417357 71417879 -46444748 - L1MEd LINE L1 -4938 1181 643 328 83 17 0 chr9 71417985 71418045 -46444582 + Alu SINE Alu 242 302 0 2134 117 0 19 chr9 71418241 71418549 -46444078 + AluSx SINE Alu 1 302 -10 219 226 57 0 chr9 71419944 71419997 -46442630 - MIR SINE MIR -65 143 88 276 297 0 27 chr9 71422024 71422135 -46440492 - L1M4b LINE L1 -4916 2041 1934 613 267 94 13 chr9 71422220 71422591 -46440036 - L1M4b LINE L1 -5267 1871 1297 736 163 0 27 chr9 71422800 71422984 -46439643 + (TGAG)n Simple_repeat Simple_repeat 1 179 0 282 298 54 102 chr9 71430295 71430500 -46432127 - MIR SINE MIR -12 250 56 1809 152 3 10 chr9 71431150 71431440 -46431187 + AluSx SINE Alu 13 300 -12 461 132 0 0 chr9 71431440 71431516 -46431111 + AluSc SINE Alu 234 309 0 2130 138 16 24 chr9 71431529 71431900 -46430727 + L1MB7 LINE L1 5816 6183 -1 319 214 0 19 chr9 71432831 71432934 -46429693 + CT-rich Low_complexity Low_complexity 3 103 0 1724 128 0 8 chr9 71432943 71433186 -46429441 - AluSx SINE Alu -71 241 1 210 226 95 0 chr9 71433671 71433755 -46428872 + MER5B DNA MER1_type 29 120 -58 1245 109 0 31 chr9 71433982 71434164 -46428463 - AluSp SINE Alu -9 304 127 2110 122 6 6 chr9 71434164 71434476 -46428151 - AluSx SINE Alu 0 312 1 194 289 0 0 chr9 71435332 71435377 -46427250 - MIR SINE MIR -101 161 117 2056 91 7 24 chr9 71435663 71435960 -46426667 + AluSq SINE Alu 22 313 0 274 318 9 36 chr9 71436009 71436119 -46426508 - MIR SINE MIR -80 182 76 184 271 51 17 chr9 71436264 71436323 -46426304 + L3 LINE CR1 1405 1465 -112 328 305 8 34 chr9 71436703 71436821 -46425806 - MIR SINE MIR -88 174 60 765 239 34 0 chr9 71437097 71437273 -46425354 + MER63A DNA MER1_type 19 200 -10 181 268 124 21 chr9 71437671 71437768 -46424859 - L2 LINE L2 -168 3104 2998 823 173 0 0 chr9 71438450 71438583 -46424044 + AluJ SINE Alu 1 133 -179 391 303 9 50 chr9 71439400 71439618 -46423009 - L1MC5 LINE L1 -148 7813 7605 267 157 0 0 chr9 71440383 71440434 -46422193 + (TG)n Simple_repeat Simple_repeat 1 51 0 322 289 0 0 chr9 71440537 71440627 -46422000 + (TG)n Simple_repeat Simple_repeat 1 90 0 337 224 154 0 chr9 71441602 71441745 -46420882 - L1MEc LINE L1 -6025 371 207 347 289 67 34 chr9 71442633 71442782 -46419845 + L1ME2 LINE L1 5772 5925 -239 740 239 112 0 chr9 71444507 71444695 -46417932 - MER3 DNA MER1_type 0 209 1 751 206 47 29 chr9 71447659 71447829 -46414798 + AluJ SINE Alu 122 294 -18 377 231 10 10 chr9 71448904 71449008 -46413619 - L1MC4 LINE L1 -139 7903 7800 225 284 113 0 chr9 71449266 71449407 -46413220 - L1MC4a LINE L1 -505 7303 7147 292 196 185 33 chr9 71449612 71449704 -46412923 - MLT1F1 LTR MaLR -281 286 181 605 291 200 15 chr9 71449862 71450336 -46412291 - L1MC4 LINE L1 -1018 7024 6463 305 402 69 15 chr9 71450634 71450895 -46411732 - L3 LINE CR1 -1193 384 110 192 340 107 13 chr9 71451996 71452146 -46410481 - L2 LINE L2 -3139 175 12 2336 83 0 3 chr9 71453196 71453497 -46409130 - AluY SINE Alu -11 300 1 1278 103 11 0 chr9 71453631 71453816 -46408811 - AluSc SINE Alu -3 306 120 306 296 26 0 chr9 71453862 71453977 -46408650 + (CA)n Simple_repeat Simple_repeat 1 118 0 250 374 11 22 chr9 71453971 71454153 -46408474 + (CATG)n Simple_repeat Simple_repeat 1 180 0 * 267 366 0 15 chr9 71454024 71454158 -46408469 + (CATA)n Simple_repeat Simple_repeat 2 133 0 2163 109 0 7 chr9 71454506 71454810 -46407817 - AluSx SINE Alu -10 302 1 2151 111 0 25 chr9 71454823 71455139 -46407488 - AluSg SINE Alu -1 309 2 1693 160 8 0 chr9 71455188 71455451 -46407176 + AluJb SINE Alu 38 302 -10 21 36 0 0 chr9 71457504 71457532 -46405095 + AT_rich Low_complexity Low_complexity 1 28 0 2133 109 0 0 chr9 71457635 71457928 -46404699 - AluSx SINE Alu -7 305 13 269 270 28 22 chr9 71458332 71458558 -46404069 + GA-rich Low_complexity Low_complexity 1 227 0 2161 81 3 29 chr9 71459517 71459825 -46402802 - AluY SINE Alu -11 300 1 2026 98 25 3 chr9 71459827 71460112 -46402515 - AluSg SINE Alu -19 291 1 1960 135 0 16 chr9 71460112 71460416 -46402211 - AluSx SINE Alu -13 299 1 347 212 39 34 chr9 71460996 71461175 -46401452 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 313 177 25 0 chr9 71461193 71461272 -46401355 + (TCCA)n Simple_repeat Simple_repeat 3 83 0 242 200 180 0 chr9 71461794 71461844 -46400783 - L2 LINE L2 -14 3258 3200 210 348 11 0 chr9 71464346 71464435 -46398192 + MIR SINE MIR 48 137 -71 262 345 0 35 chr9 71464739 71464910 -46397717 + G-rich Low_complexity Low_complexity 3 167 0 198 227 136 0 chr9 71465071 71465137 -46397490 + MIR SINE MIR 111 185 -77 2106 118 7 0 chr9 71465763 71466059 -46396568 - AluSp SINE Alu -15 298 1 2204 101 0 0 chr9 71466762 71467050 -46395577 - AluSx SINE Alu -24 288 1 344 284 82 12 chr9 71467839 71468003 -46394624 - MIR SINE MIR -44 218 38 1494 174 4 0 chr9 71468110 71468357 -46394270 + AluJb SINE Alu 1 248 -64 243 0 0 0 chr9 71468370 71468397 -46394230 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1719 166 25 0 chr9 71468397 71468698 -46393929 + AluJb SINE Alu 1 308 0 188 323 90 23 chr9 71469875 71470008 -46392619 + L2 LINE L2 2943 3084 -188 224 250 12 0 chr9 71471326 71471406 -46391221 + (CA)n Simple_repeat Simple_repeat 2 82 0 357 261 34 10 chr9 71471605 71471723 -46390904 - MIR SINE MIR -73 135 37 282 137 0 39 chr9 71473055 71473106 -46389521 + MIR SINE MIR 105 153 -109 41 0 0 0 chr9 71474453 71474494 -46388133 + GC_rich Low_complexity Low_complexity 1 41 0 181 273 26 65 chr9 71475406 71475483 -46387144 - MIR SINE MIR -76 186 113 2125 102 24 0 chr9 71475926 71476219 -46386408 - AluSx SINE Alu -12 300 1 2340 87 0 0 chr9 71476559 71476859 -46385768 - AluY SINE Alu -11 300 1 180 139 23 70 chr9 71477870 71477913 -46384714 - MER5A DNA MER1_type -102 87 47 243 250 73 40 chr9 71478013 71478137 -46384490 - MIR SINE MIR -88 174 47 1174 263 76 31 chr9 71478605 71479021 -46383606 + MLT1J LTR MaLR 2 441 -70 201 39 0 0 chr9 71479021 71479047 -46383580 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1174 263 76 31 chr9 71479047 71479075 -46383552 + MLT1J LTR MaLR 441 466 -45 2532 59 0 0 chr9 71479077 71479382 -46383245 - AluY SINE Alu -6 305 1 214 304 176 7 chr9 71479384 71479679 -46382948 + L2 LINE L2 2662 3006 -307 2190 103 0 0 chr9 71480694 71480984 -46381643 + AluSx SINE Alu 1 290 -22 1520 161 21 0 chr9 71481039 71481319 -46381308 - LOR1b LTR ERV1 0 461 176 1924 127 0 52 chr9 71481342 71481478 -46381149 + AluSx SINE Alu 5 147 -165 2162 110 10 0 chr9 71481478 71481777 -46380850 + AluSq SINE Alu 5 306 -7 1924 127 0 52 chr9 71481777 71481964 -46380663 + AluSx SINE Alu 147 311 -1 228 253 0 96 chr9 71482054 71482137 -46380490 - MIR SINE MIR -108 154 80 252 281 146 0 chr9 71482468 71482557 -46380070 - MER5A DNA MER1_type -2 187 86 2053 130 7 0 chr9 71483035 71483334 -46379293 + AluSx SINE Alu 1 301 -11 2193 82 4 0 chr9 71483746 71484026 -46378601 + AluSx SINE Alu 1 281 -31 336 24 0 0 chr9 71484026 71484067 -46378560 + (CA)n Simple_repeat Simple_repeat 2 42 0 353 265 17 26 chr9 71484715 71484832 -46377795 + GA-rich Low_complexity Low_complexity 2 117 0 374 295 45 0 chr9 71485333 71485445 -46377182 - MIR SINE MIR -56 206 90 361 233 33 72 chr9 71485668 71485848 -46376779 + L2 LINE L2 2887 3059 -254 205 292 62 56 chr9 71486169 71486313 -46376314 - MIR SINE MIR -38 224 80 557 176 0 0 chr9 71487859 71487944 -46374683 - AluJ/FLAM SINE Alu -225 87 3 213 279 35 57 chr9 71488629 71488787 -46373840 + MIR SINE MIR 46 202 -60 230 273 0 26 chr9 71488820 71488897 -46373730 + G-rich Low_complexity Low_complexity 5 79 0 197 331 108 7 chr9 71489092 71489231 -46373396 + MIR SINE MIR 60 212 -50 221 304 59 0 chr9 71489262 71489364 -46373263 - MIR SINE MIR -88 174 67 1887 131 20 23 chr9 71490134 71490439 -46372188 - AluSg SINE Alu -6 304 1 384 244 89 24 chr9 71490497 71490620 -46372007 - MIR SINE MIR -51 211 81 2313 71 0 7 chr9 71490669 71490964 -46371663 - AluY SINE Alu -18 293 1 225 94 0 0 chr9 71492628 71492660 -46369967 + (TC)n Simple_repeat Simple_repeat 2 33 0 408 20 0 0 chr9 71494181 71494230 -46368397 + (CA)n Simple_repeat Simple_repeat 1 49 0 224 214 235 0 chr9 71495707 71495805 -46366822 + L2 LINE L2 2941 3061 -211 296 264 0 58 chr9 71495932 71496087 -46366540 + GA-rich Low_complexity Low_complexity 5 150 0 547 330 16 6 chr9 71496209 71496391 -46366236 - L1MC/D LINE L1 -2156 5652 5469 2384 108 0 3 chr9 71496465 71496779 -46365848 - AluSq SINE Alu 0 313 1 198 351 36 27 chr9 71497362 71497473 -46365154 + L2 LINE L2 2932 3043 -270 2183 104 3 0 chr9 71497542 71497879 -46364748 - AluY SINE Alu 0 311 1 181 111 56 0 chr9 71498197 71498233 -46364394 + MIR SINE MIR 103 140 -68 3533 159 62 90 chr9 71499169 71499684 -46362943 - L1MB7 LINE L1 -11 6173 5645 2413 76 3 17 chr9 71499684 71499986 -46362641 - AluSx SINE Alu -14 298 1 3533 159 62 90 chr9 71499986 71500181 -46362446 - L1MB7 LINE L1 -539 5645 5446 2185 107 0 50 chr9 71500181 71500498 -46362129 - AluSg SINE Alu -9 301 1 3533 159 62 90 chr9 71500498 71500716 -46361911 - L1MB7 LINE L1 -738 5446 5259 2366 84 0 10 chr9 71500716 71501014 -46361613 + AluSq SINE Alu 1 295 -18 3533 159 62 90 chr9 71501014 71501160 -46361467 - L1MB7 LINE L1 -925 5259 5110 291 313 70 8 chr9 71501543 71501671 -46360956 - MIR SINE MIR -70 192 57 326 284 90 0 chr9 71501684 71501818 -46360809 - L2 LINE L2 0 3272 3127 2131 104 0 0 chr9 71501837 71502106 -46360521 + AluSx SINE Alu 6 274 -38 2253 119 0 0 chr9 71502646 71502948 -46359679 + AluSx SINE Alu 1 302 -10 781 138 22 0 chr9 71502948 71503086 -46359541 + L1MB8 LINE L1 6038 6178 0 2175 124 3 3 chr9 71503095 71503401 -46359226 + AluJb SINE Alu 1 306 -6 2038 90 7 53 chr9 71503413 71503740 -46358887 + AluSq SINE Alu 1 313 0 637 244 29 23 chr9 71503869 71504041 -46358586 - MER5A DNA MER1_type -16 173 1 1724 280 24 6 chr9 71504208 71504708 -46357919 + MLT1J LTR MaLR 1 509 -2 2260 184 15 20 chr9 71505650 71506087 -46356540 + L1MB2 LINE L1 5682 6118 -53 2301 98 0 26 chr9 71506087 71506394 -46356233 + AluSx SINE Alu 1 299 -13 2260 184 15 20 chr9 71506394 71506412 -46356215 + L1MB2 LINE L1 6118 6135 -36 349 241 149 21 chr9 71506888 71507029 -46355598 - LTR41 LTR ERVL -604 169 11 552 235 64 5 chr9 71507032 71507219 -46355408 + L1M4 LINE L1 5066 5263 -883 2338 98 3 0 chr9 71507219 71507515 -46355112 + AluSx SINE Alu 1 297 -15 1537 172 27 25 chr9 71507633 71507805 -46354822 - L1M3 LINE L1 -605 5575 5405 2280 102 0 32 chr9 71507805 71508118 -46354509 - AluSx SINE Alu -9 303 1 1537 172 27 25 chr9 71508118 71508332 -46354295 - L1M3 LINE L1 -775 5405 5188 2050 224 71 29 chr9 71508362 71509117 -46353510 - L1 LINE L1 -1315 4831 4007 968 184 51 0 chr9 71509122 71509318 -46353309 + MER2 DNA MER2_type 6 211 -134 1163 164 31 213 chr9 71509433 71509466 -46353161 - L1 LINE L1 -2138 4008 3971 1616 191 84 5 chr9 71509466 71509833 -46352794 - MSTD LTR MaLR 0 396 1 1163 164 31 213 chr9 71509833 71510109 -46352518 - L1 LINE L1 -2175 3971 3726 466 239 0 9 chr9 71510109 71510218 -46352409 - FLAM_C SINE Alu -1 142 35 1163 164 31 213 chr9 71510218 71510385 -46352242 - L1 LINE L1 -2420 3726 3530 306 267 68 115 chr9 71510531 71510600 -46352027 - MLT1J LTR MaLR -70 441 370 1923 126 34 27 chr9 71510600 71510894 -46351733 - AluSq SINE Alu -17 296 1 2535 72 0 7 chr9 71510896 71511202 -46351425 - AluY SINE Alu -7 304 1 2224 121 7 0 chr9 71511212 71511519 -46351108 - AluSx SINE Alu -3 309 1 306 267 68 115 chr9 71511519 71511731 -46350896 - MLT1J LTR MaLR -151 360 160 2104 122 39 30 chr9 71512133 71512494 -46350133 + THE1B LTR MaLR 1 364 0 2334 99 0 3 chr9 71512724 71513017 -46349610 - AluSq SINE Alu -21 292 1 324 243 176 67 chr9 71513195 71513434 -46349193 - MLT1H LTR MaLR -146 403 139 260 279 96 55 chr9 71513602 71513735 -46348892 - L1ME LINE L1 -237 5884 5737 2108 119 33 0 chr9 71513735 71514037 -46348590 - AluSq SINE Alu 0 313 2 260 279 96 55 chr9 71514037 71514122 -46348505 - L1ME LINE L1 -384 5737 5657 2123 223 32 25 chr9 71514133 71514658 -46347969 + MLT1F LTR MaLR 8 536 -6 320 267 83 0 chr9 71514676 71514796 -46347831 - MLT1I LTR MaLR -7 402 273 263 324 85 15 chr9 71514826 71514968 -46347659 - MLT1J1 LTR MaLR -286 160 1 679 313 57 41 chr9 71514975 71515280 -46347347 + L1ME4a LINE L1 5352 5651 -470 252 0 0 0 chr9 71515280 71515308 -46347319 + (TA)n Simple_repeat Simple_repeat 2 29 0 2522 73 3 0 chr9 71515308 71515610 -46347017 - AluY SINE Alu -8 303 1 679 313 57 41 chr9 71515610 71515759 -46346868 + L1ME4a LINE L1 5650 5815 -306 242 160 0 40 chr9 71515857 71515907 -46346720 + L1ME4a LINE L1 5979 6026 -95 2062 94 61 0 chr9 71516088 71516365 -46346262 - AluSx SINE Alu -17 295 2 218 123 18 70 chr9 71516534 71516591 -46346036 + GA-rich Low_complexity Low_complexity 4 57 0 269 290 131 37 chr9 71517634 71517848 -46344779 - MLT1J LTR MaLR -169 342 109 2021 117 3 44 chr9 71517935 71518252 -46344375 - AluSq SINE Alu -5 308 5 1357 260 84 38 chr9 71518257 71518729 -46343898 - L1ME1 LINE L1 -298 5868 5367 2530 70 0 3 chr9 71518729 71519029 -46343598 - AluY SINE Alu -12 299 1 1357 260 84 38 chr9 71519029 71519090 -46343537 - L1ME1 LINE L1 -799 5367 5310 955 196 0 23 chr9 71519118 71519291 -46343336 + AluJb SINE Alu 132 300 -12 1738 160 42 17 chr9 71519525 71519812 -46342815 - AluSg SINE Alu -16 294 1 2097 96 39 4 chr9 71519875 71520156 -46342471 - AluSq SINE Alu -22 291 1 2140 115 30 10 chr9 71520379 71520684 -46341943 - AluY SINE Alu 0 311 1 359 283 13 37 chr9 71520762 71520935 -46341692 - MLT1I LTR MaLR 0 549 229 2255 106 0 7 chr9 71521368 71521661 -46340966 - AluSc SINE Alu -18 291 1 338 95 270 0 chr9 71521663 71521726 -46340901 - AluS SINE Alu -222 80 1 349 274 147 19 chr9 71521781 71521938 -46340689 - L1ME LINE L1 -462 5659 5483 272 275 0 33 chr9 71522328 71522419 -46340208 + MIR SINE MIR 58 145 -63 786 292 168 13 chr9 71523321 71523708 -46338919 + MLT1K LTR MaLR 125 571 -17 991 154 11 50 chr9 71523982 71524136 -46338491 + FAM SINE Alu 1 148 -163 2183 130 0 0 chr9 71524136 71524435 -46338192 - AluSc SINE Alu -10 299 1 991 154 11 50 chr9 71524435 71524462 -46338165 + FAM SINE Alu 148 175 0 216 255 75 28 chr9 71524611 71524717 -46337910 + MIR SINE MIR 29 139 -123 338 250 35 69 chr9 71524751 71524895 -46337732 - L1ME LINE L1 -2325 5483 5345 339 236 49 42 chr9 71525425 71525569 -46337058 - MER20B DNA MER1_type -76 707 563 292 317 40 72 chr9 71525660 71525843 -46336784 - L1MC/D LINE L1 -2267 5541 5367 1990 124 3 72 chr9 71525843 71526174 -46336453 - AluSx SINE Alu 0 312 5 292 317 40 72 chr9 71526174 71526239 -46336388 - L1MC/D LINE L1 -2441 5367 5301 880 216 54 0 chr9 71526246 71526450 -46336177 - MER82 DNA MER2_type -234 419 205 261 290 43 11 chr9 71526514 71526607 -46336020 - MER82 DNA MER2_type -557 96 1 200 326 47 0 chr9 71527624 71527710 -46334917 - MIR SINE MIR -87 175 86 2229 102 0 20 chr9 71528023 71528318 -46334309 - AluSx SINE Alu -23 289 1 465 302 57 0 chr9 71528361 71528553 -46334074 - L1ME LINE L1 -375 5815 5613 1059 201 178 15 chr9 71530201 71530594 -46332033 - MER31B LTR ERV1 -9 457 1 1949 251 124 37 chr9 71536233 71537529 -46325098 + L1MDb LINE L1 775 2347 -4240 2383 90 3 3 chr9 71537529 71537830 -46324797 + AluSp SINE Alu 1 301 -12 1949 251 124 37 chr9 71537830 71538221 -46324406 + L1MDb LINE L1 2347 2703 -3884 2349 256 70 44 chr9 71538227 71538245 -46324382 - L1ME LINE L1 -1864 4351 4335 2208 106 7 0 chr9 71538245 71538527 -46324100 - AluSc SINE Alu -25 284 1 2349 256 70 44 chr9 71538527 71539078 -46323549 - L1ME LINE L1 -1880 4335 3741 231 36 0 0 chr9 71539078 71539106 -46323521 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 2349 256 70 44 chr9 71539106 71539562 -46323065 - L1ME LINE L1 -2474 3741 3298 3355 255 59 43 chr9 71539712 71540900 -46321727 - L1MEc LINE L1 -2932 3283 2115 2120 103 25 3 chr9 71540900 71541182 -46321445 + AluSc SINE Alu 1 288 -21 3355 255 59 43 chr9 71541182 71541363 -46321264 - L1MEc LINE L1 -4100 2115 1938 2010 133 34 0 chr9 71541363 71541656 -46320971 - AluSx SINE Alu -9 303 1 3355 255 59 43 chr9 71541656 71542397 -46320230 - L1MEc LINE L1 -4277 1938 1210 2407 103 3 0 chr9 71542397 71542707 -46319920 - AluSq SINE Alu -2 311 1 3355 255 59 43 chr9 71542707 71542918 -46319709 - L1MEc LINE L1 -5005 1210 1004 24 32 0 0 chr9 71542918 71542949 -46319678 + AT_rich Low_complexity Low_complexity 1 31 0 3355 255 59 43 chr9 71542949 71542976 -46319651 - L1MEc LINE L1 -5211 1004 979 1956 167 3 0 chr9 71542976 71543275 -46319352 - AluJb SINE Alu -12 300 1 3355 255 59 43 chr9 71543275 71543405 -46319222 - L1MEc LINE L1 -5236 979 853 2143 111 7 0 chr9 71543405 71543713 -46318914 - AluSq SINE Alu 0 310 1 3355 255 59 43 chr9 71543713 71543875 -46318752 - L1MEc LINE L1 -5362 853 695 1079 209 14 0 chr9 71543875 71544090 -46318537 + MER20 DNA MER1_type 2 219 0 3355 255 59 43 chr9 71544090 71544691 -46317936 - L1MEc LINE L1 -5520 695 28 351 265 41 10 chr9 71544820 71544918 -46317709 + L1ME4a LINE L1 5846 5946 -175 2136 112 7 0 chr9 71544972 71545258 -46317369 + AluSx SINE Alu 1 288 -24 698 159 7 66 chr9 71545884 71545966 -46316661 + L1M4c LINE L1 29 100 -6284 204 40 0 0 chr9 71545974 71545999 -46316628 + (TG)n Simple_repeat Simple_repeat 2 26 0 2042 133 10 0 chr9 71545999 71546283 -46316344 - AluSq SINE Alu -23 290 1 698 159 7 66 chr9 71546283 71546351 -46316276 + L1M4c LINE L1 100 170 -6214 * 1132 171 79 34 chr9 71546350 71546642 -46315985 + L1M4c LINE L1 532 836 -5548 5792 213 47 13 chr9 71546671 71546699 -46315928 + L1M4c LINE L1 1997 2023 -4359 1347 137 0 52 chr9 71546699 71546947 -46315680 + L1PB4 LINE L1 5922 6156 0 5792 213 47 13 chr9 71546947 71549118 -46313509 + L1M4c LINE L1 2023 4271 -2111 364 221 12 0 chr9 71549121 71549207 -46313420 + L1MB4 LINE L1 5946 6032 -148 607 66 0 0 chr9 71549207 71549283 -46313344 - U6 snRNA snRNA -31 76 1 523 209 124 0 chr9 71549285 71549414 -46313213 + L1MB4 LINE L1 6022 6166 -14 544 194 16 26 chr9 71549515 71549687 -46312940 - LTR37A LTR ERV1 0 426 291 530 247 84 25 chr9 71549749 71550024 -46312603 + HAL1 LINE L1 2107 2397 -110 367 241 55 10 chr9 71550034 71550233 -46312394 + L1ME1 LINE L1 1138 1345 -5197 434 157 0 24 chr9 71550233 71550316 -46312311 + AluS SINE Alu 232 312 0 1535 229 27 25 chr9 71550316 71550792 -46311835 + L1ME1 LINE L1 2645 3121 -3523 1623 191 38 3 chr9 71550792 71551125 -46311502 + MLT2D LTR ERVL 10 357 -57 432 97 0 0 chr9 71551125 71551187 -46311440 + (CA)n Simple_repeat Simple_repeat 2 63 0 1623 191 38 3 chr9 71551187 71551198 -46311429 + MLT2D LTR ERVL 357 366 -48 303 28 0 0 chr9 71551568 71551604 -46311023 + (TG)n Simple_repeat Simple_repeat 1 36 0 6690 230 58 49 chr9 71551944 71552360 -46310267 + L1ME1 LINE L1 3358 3769 -2895 2439 66 33 7 chr9 71552360 71552663 -46309964 + AluY SINE Alu 1 311 0 6690 230 58 49 chr9 71552663 71553355 -46309272 + L1ME1 LINE L1 3769 4453 -2211 1091 170 0 6 chr9 71553355 71553526 -46309101 + FAM SINE Alu 1 170 -5 6690 230 58 49 chr9 71553526 71554875 -46307752 + L1ME1 LINE L1 4453 5865 -799 2415 78 0 0 chr9 71554875 71555168 -46307459 + AluSg1 SINE Alu 1 293 -16 6690 230 58 49 chr9 71555168 71555961 -46306666 + L1ME1 LINE L1 5865 6649 -15 2509 270 73 8 chr9 71556077 71556958 -46305669 + L1ME1 LINE L1 228 1165 -5422 2483 278 84 11 chr9 71556957 71558730 -46303897 + L1ME1 LINE L1 4110 6010 -416 * 766 271 53 37 chr9 71558971 71559355 -46303272 + L1ME1 LINE L1 6026 6436 -2 313 257 118 43 chr9 71559443 71559862 -46302765 + L1MEc LINE L1 1117 1583 -4823 308 304 159 31 chr9 71559975 71560202 -46302425 + L1MEc LINE L1 1719 1974 -4432 1416 278 125 24 chr9 71560541 71561750 -46300877 + L1MEc LINE L1 2405 3768 -2638 455 293 119 38 chr9 71562207 71562552 -46300075 + L1MEc LINE L1 3755 4127 -2279 379 255 49 0 chr9 71562592 71562694 -46299933 + L1MEc LINE L1 4272 4378 -2028 227 296 30 0 chr9 71562715 71562795 -46299832 + GA-rich Low_complexity Low_complexity 5 139 0 216 291 18 0 chr9 71562800 71562855 -46299772 + MER5B DNA MER1_type 59 114 -64 3961 256 70 19 chr9 71563403 71565307 -46297320 + L1MB1 LINE L1 4423 6434 -15 311 256 122 0 chr9 71565572 71565662 -46296965 + L1ME3A LINE L1 5834 5934 -236 1697 140 65 4 chr9 71565898 71566177 -46296450 + AluJb SINE Alu 1 296 -16 1251 127 94 9 chr9 71568362 71568574 -46294053 - MER30 DNA MER1_type 0 230 1 194 290 16 0 chr9 71569221 71569283 -46293344 + L3 LINE CR1 1191 1253 -324 264 341 96 7 chr9 71569472 71569607 -46293020 + L3 LINE CR1 1307 1453 -124 2282 95 7 0 chr9 71571442 71571738 -46290889 - AluSx SINE Alu -13 299 2 376 254 11 0 chr9 71571931 71572108 -46290519 + CT-rich Low_complexity Low_complexity 1 179 0 23 0 0 0 chr9 71573522 71573545 -46289082 + AT_rich Low_complexity Low_complexity 1 23 0 201 175 48 36 chr9 71573835 71574001 -46288626 + CT-rich Low_complexity Low_complexity 1 168 0 246 198 35 35 chr9 71574013 71574099 -46288528 + CT-rich Low_complexity Low_complexity 1 86 0 331 141 32 71 chr9 71574101 71574453 -46288174 + C-rich Low_complexity Low_complexity 1 338 0 193 129 10 89 chr9 71574553 71574654 -46287973 + (TCC)n Simple_repeat Simple_repeat 1 93 0 296 218 17 39 chr9 71574732 71574911 -46287716 + C-rich Low_complexity Low_complexity 3 177 0 430 177 26 88 chr9 71574943 71575135 -46287492 + C-rich Low_complexity Low_complexity 1 180 0 330 201 58 23 chr9 71575164 71575338 -46287289 + CT-rich Low_complexity Low_complexity 1 180 0 218 122 49 0 chr9 71577946 71577987 -46284640 + (CCCCG)n Simple_repeat Simple_repeat 3 45 0 23 0 0 0 chr9 71578609 71578632 -46283995 + AT_rich Low_complexity Low_complexity 1 23 0 1893 163 0 3 chr9 71581057 71581351 -46281276 - AluJb SINE Alu -19 293 1 256 220 0 0 chr9 71584588 71584638 -46277989 + T-rich Low_complexity Low_complexity 1 50 0 203 0 0 36 chr9 71585356 71585384 -46277243 + (TC)n Simple_repeat Simple_repeat 1 27 0 193 289 89 52 chr9 71586768 71586903 -46275724 - MIR SINE MIR -8 254 115 219 36 0 0 chr9 71586930 71586958 -46275669 + (CAGGC)n Simple_repeat Simple_repeat 2 29 0 357 274 37 7 chr9 71587225 71587360 -46275267 - L1M4 LINE L1 -2514 3632 3494 708 248 117 60 chr9 71587489 71588069 -46274558 - L1M4 LINE L1 -2631 3515 2903 210 341 71 0 chr9 71588237 71588363 -46274264 + L2 LINE L2 2542 2676 -638 1174 137 0 33 chr9 71588575 71588590 -46274037 + AluJo SINE Alu 120 134 -178 1747 173 11 37 chr9 71588590 71588942 -46273685 - L1MB3 LINE L1 -19 6164 5822 1174 137 0 33 chr9 71588942 71589108 -46273519 + AluJo SINE Alu 134 295 -17 3260 197 68 61 chr9 71589108 71589735 -46272892 - L1MB3 LINE L1 -86 6333 5712 264 30 0 0 chr9 71589741 71589774 -46272853 + (TG)n Simple_repeat Simple_repeat 2 34 0 2259 82 25 0 chr9 71589774 71590047 -46272580 - AluSq SINE Alu -24 289 7 3260 197 68 61 chr9 71590047 71590509 -46272118 - L1MB3 LINE L1 -707 5712 5219 2113 87 0 18 chr9 71590509 71590784 -46271843 - AluSc SINE Alu -12 297 28 3260 197 68 61 chr9 71590784 71590962 -46271665 - L1MB3 LINE L1 -1200 5219 5044 1109 224 64 44 chr9 71590934 71591415 -46271212 - L1MB3 LINE L1 -5088 1296 806 * 246 222 49 0 chr9 71591415 71591496 -46271131 - L1MEc LINE L1 -5273 1123 1039 277 259 95 0 chr9 71591790 71591906 -46270721 - L1M LINE L1 -772 5392 5266 340 133 0 0 chr9 71591919 71591979 -46270648 - HSMAR2 DNA Mariner 0 1302 1243 228 186 17 85 chr9 71591962 71591980 -46270647 + AluSp SINE Alu 120 138 -165 * 1911 145 3 36 chr9 71591980 71592124 -46270503 + AluJb SINE Alu 1 131 -181 2354 87 0 35 chr9 71592124 71592434 -46270193 + AluSq SINE Alu 2 300 -13 1911 145 3 36 chr9 71592434 71592593 -46270034 + AluJb SINE Alu 131 294 -18 228 186 17 85 chr9 71592593 71592633 -46269994 + AluSp SINE Alu 138 174 -129 7046 142 15 39 chr9 71592633 71593918 -46268709 - HSMAR2 DNA Mariner -46 1256 3 369 0 0 0 chr9 71593918 71593959 -46268668 + (TG)n Simple_repeat Simple_repeat 2 42 0 809 310 80 19 chr9 71594043 71594582 -46268045 - L1M4 LINE L1 -1098 5048 4477 765 303 37 0 chr9 71594583 71594877 -46267750 - L1M4 LINE L1 -1690 4456 4152 347 234 53 0 chr9 71599263 71599357 -46263270 + Charlie4 DNA MER1_type 20 118 -1843 2358 105 0 10 chr9 71599756 71600069 -46262558 - AluSg SINE Alu 0 310 1 2536 58 3 6 chr9 71600441 71600753 -46261874 - AluY SINE Alu 0 311 1 1088 182 0 0 chr9 71601309 71601485 -46261142 + AluJb SINE Alu 137 312 0 256 299 87 54 chr9 71601990 71602231 -46260396 + L2 LINE L2 2231 2479 -835 694 298 89 17 chr9 71603193 71603656 -46258971 + MLT1D LTR MaLR 3 498 -7 217 217 42 66 chr9 71604122 71604231 -46258396 + MER5A DNA MER1_type 4 121 -68 1445 187 27 33 chr9 71606141 71606311 -46256316 - AluJo SINE Alu -14 298 129 2023 110 27 3 chr9 71606311 71606603 -46256024 - AluSx SINE Alu -13 299 1 1445 187 27 33 chr9 71606603 71606732 -46255895 - AluJo SINE Alu -183 129 1 2020 144 0 13 chr9 71607010 71607308 -46255319 + AluSx SINE Alu 1 294 -18 2482 73 0 7 chr9 71608724 71609025 -46253602 + AluY SINE Alu 1 299 -12 511 203 133 22 chr9 71609434 71609670 -46252957 - L1MCa LINE L1 -3951 2475 2270 1046 202 52 0 chr9 71609682 71609915 -46252712 - L1MCa LINE L1 -5704 722 478 1285 84 0 0 chr9 71609915 71610070 -46252557 + AluSg/x SINE Alu 137 291 -21 1179 267 7 0 chr9 71610071 71610341 -46252286 - L1MCa LINE L1 -5942 484 213 2551 101 31 6 chr9 71610962 71611317 -46251310 + THE1B LTR MaLR 1 364 0 399 237 21 10 chr9 71611668 71611765 -46250862 - MER5A DNA MER1_type -1 188 91 219 245 71 41 chr9 71612010 71612118 -46250509 - MIR SINE MIR -63 145 36 23 0 0 0 chr9 71612229 71612252 -46250375 + AT_rich Low_complexity Low_complexity 1 23 0 2198 114 0 3 chr9 71612300 71612597 -46250030 - AluSx SINE Alu -16 296 1 2130 147 0 0 chr9 71612659 71612971 -46249656 - AluSx SINE Alu 0 312 1 2213 121 18 49 chr9 71615436 71615823 -46246804 + THE1C LTR MaLR 1 375 0 10929 109 9 33 chr9 71615824 71617443 -46245184 + THE1C-int LTR MaLR 2 1580 0 2244 122 24 27 chr9 71617443 71617819 -46244808 + THE1C LTR MaLR 1 375 0 188 163 23 0 chr9 71618478 71618521 -46244106 + (CA)n Simple_repeat Simple_repeat 1 44 0 1955 125 14 10 chr9 71618763 71619052 -46243575 - AluSx SINE Alu -22 290 1 231 36 0 0 chr9 71619186 71619214 -46243413 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 22 88 0 0 chr9 71619650 71619707 -46242920 + AT_rich Low_complexity Low_complexity 1 57 0 2481 88 0 3 chr9 71619776 71620082 -46242545 - AluSp SINE Alu -8 305 1 424 279 29 21 chr9 71621000 71621140 -46241487 + L3 LINE CR1 1282 1422 -155 241 229 36 36 chr9 71621429 71621512 -46241115 + AluSc SINE Alu 1 83 -216 1958 119 56 0 chr9 71622182 71622467 -46240160 + AluSx SINE Alu 1 301 -11 3098 69 7 42 chr9 71622936 71623289 -46239338 - L1PA10 LINE L1 0 6168 5833 1819 130 63 18 chr9 71623289 71623574 -46239053 - AluSx SINE Alu -14 298 1 3098 69 7 42 chr9 71623574 71623667 -46238960 - L1PA10 LINE L1 -335 5833 5738 2018 99 99 0 chr9 71625123 71625405 -46237222 + AluSx SINE Alu 1 310 -2 3593 51 0 9 chr9 71625723 71626174 -46236453 + LTR7 LTR ERV1 2 448 -2 19537 93 24 20 chr9 71626176 71629160 -46233467 + HERVH LTR ERV1 1 2995 -4718 915 127 7 0 chr9 71629139 71629289 -46233338 + HERVH LTR ERV1 3140 3290 -4423 * 3168 118 0 8 chr9 71629293 71629785 -46232842 + HERVH LTR ERV1 3505 3992 -3721 * 4254 143 5 1 chr9 71629772 71630438 -46232189 + HERVH LTR ERV1 4482 5149 -2564 1379 110 18 9 chr9 71630439 71630657 -46231970 + HERVH LTR ERV1 5600 5819 -1894 * 2429 82 45 13 chr9 71630655 71631035 -46231592 + HERVH LTR ERV1 7322 7713 0 3478 56 14 7 chr9 71631035 71631480 -46231147 + LTR7 LTR ERV1 1 448 -2 1912 134 0 0 chr9 71631788 71632057 -46230570 - AluSp SINE Alu -11 302 34 1794 134 11 0 chr9 71632174 71632436 -46230191 + AluSq SINE Alu 45 309 -4 1585 133 52 0 chr9 71632438 71632686 -46229941 - MER57B LTR ERV1 -173 261 1 1234 208 86 0 chr9 71634011 71634266 -46228361 + AluJb SINE Alu 6 282 -30 536 113 31 21 chr9 71634546 71634643 -46227984 + MER4A LTR ERV1 1 98 -566 1726 142 3 27 chr9 71634643 71634997 -46227630 + MER4A LTR ERV1 261 664 0 2667 84 158 79 chr9 71634999 71635544 -46227083 + MER4A-int LTR ERV1 1 588 -6010 * 3840 129 34 20 chr9 71635539 71636422 -46226205 + MER4B-int LTR ERV1 199 1149 -5609 369 0 0 0 chr9 71636422 71636463 -46226164 + (TG)n Simple_repeat Simple_repeat 2 42 0 4218 76 60 9 chr9 71636482 71637166 -46225461 + MER4B-int LTR ERV1 1763 2481 -4117 2377 102 0 0 chr9 71637167 71637461 -46225166 + AluY SINE Alu 1 294 -17 1194 133 124 26 chr9 71637489 71637723 -46224904 - LTR8 LTR ERV1 -434 257 1 1106 106 98 80 chr9 71637723 71637997 -46224630 + MER4B-int LTR ERV1 2737 3015 -3583 6874 108 26 22 chr9 71638097 71638752 -46223875 + MER4B-int LTR ERV1 4468 5132 -1466 2038 141 3 3 chr9 71638752 71639056 -46223571 - AluSx SINE Alu -8 304 1 6874 108 26 22 chr9 71639056 71639568 -46223059 + MER4B-int LTR ERV1 5132 5640 -958 2192 126 17 0 chr9 71639850 71640152 -46222475 - AluSx SINE Alu -5 307 1 229 310 146 12 chr9 71640474 71640639 -46221988 - MIR SINE MIR -44 218 23 533 328 122 55 chr9 71640642 71641151 -46221476 - L1M4 LINE L1 -1168 4978 4436 773 248 65 77 chr9 71641239 71641395 -46221232 - L2 LINE L2 -13 3300 3144 2237 210 36 0 chr9 71641395 71641834 -46220793 + MSTB2 LTR MaLR 3 457 0 773 248 65 77 chr9 71641834 71641876 -46220751 - L2 LINE L2 -169 3144 3103 1451 223 60 48 chr9 71641876 71642373 -46220254 + MLT1D LTR MaLR 1 503 -2 773 248 65 77 chr9 71642373 71642512 -46220115 - L2 LINE L2 -210 3103 2966 257 277 188 18 chr9 71642592 71642704 -46219923 + MIR3 SINE MIR 15 145 -63 249 264 103 66 chr9 71643691 71643933 -46218694 - L2 LINE L2 -833 2481 2231 2229 115 0 3 chr9 71644423 71644728 -46217899 - AluSx SINE Alu -8 304 1 400 191 0 0 chr9 71644731 71644799 -46217828 - AluJo SINE Alu -9 293 226 859 196 7 0 chr9 71644800 71644948 -46217679 - AluJo SINE Alu -163 149 1 1253 154 45 0 chr9 71644989 71645190 -46217437 + MSTB LTR MaLR 217 426 0 2514 198 14 24 chr9 71645190 71645582 -46217045 - ERVL LTR ERVL -3989 1775 1388 1806 172 27 0 chr9 71645582 71645879 -46216748 - AluJo SINE Alu -7 305 1 2514 198 14 24 chr9 71645879 71645991 -46216636 - ERVL LTR ERVL -4376 1388 1276 6553 119 32 19 chr9 71646007 71646182 -46216445 - L1MA3 LINE L1 0 6305 6134 206 32 32 0 chr9 71646182 71646213 -46216414 + (TTA)n Simple_repeat Simple_repeat 2 33 0 2093 125 0 7 chr9 71646213 71646500 -46216127 - AluSq SINE Alu -28 285 1 6553 119 32 19 chr9 71646500 71647510 -46215117 - L1MA3 LINE L1 -170 6135 5104 423 209 0 0 chr9 71647512 71647598 -46215029 - ERVL LTR ERVL -4407 1247 1162 1045 295 97 21 chr9 71647774 71648337 -46214290 + L2 LINE L2 2435 3053 -260 301 272 11 122 chr9 71648492 71648672 -46213955 - MER5A DNA MER1_type -7 182 23 1840 158 123 9 chr9 71648673 71649022 -46213605 + MLT1B LTR MaLR 1 389 -1 1197 153 5 0 chr9 71649024 71649227 -46213400 + MLT1B-int LTR MaLR 2 205 -1166 2340 112 0 0 chr9 71649227 71649530 -46213097 + AluSg SINE Alu 1 303 -7 1579 92 0 31 chr9 71650451 71650679 -46211948 + AluSg/x SINE Alu 89 309 -1 311 235 106 47 chr9 71650683 71650853 -46211774 + L1M4 LINE L1 4254 4433 -1713 2001 125 11 0 chr9 71650877 71651197 -46211430 - AluSx SINE Alu 0 323 1 810 203 123 27 chr9 71651201 71651462 -46211165 - L1MEc LINE L1 -4469 2138 1853 4397 151 34 4 chr9 71651463 71652218 -46210409 - L1MC1 LINE L1 0 6333 5556 887 107 16 8 chr9 71652219 71652341 -46210286 + AluSq/x SINE Alu 2 124 -189 2073 142 0 0 chr9 71652343 71652645 -46209982 + AluSx SINE Alu 1 302 -10 1482 146 34 15 chr9 71652645 71652913 -46209714 - L1MC1 LINE L1 -778 5566 5294 4749 167 42 22 chr9 71652923 71653864 -46208763 - L1MB1 LINE L1 -39 6365 5363 2011 148 7 10 chr9 71653864 71654168 -46208459 - AluSx SINE Alu -9 303 1 4749 167 42 22 chr9 71654168 71654984 -46207643 - L1MB1 LINE L1 -1041 5363 4565 1710 157 0 11 chr9 71654989 71655257 -46207370 - AluSx SINE Alu -47 265 1 1441 233 91 9 chr9 71655305 71655635 -46206992 - LTR18A LTR ERVL 0 357 1 16093 148 11 6 chr9 71655636 71658013 -46204614 - HERVL18 LTR ERVL 0 6047 3659 517 133 57 9 chr9 71658013 71658118 -46204509 - L1MB1 LINE L1 -4059 2325 2216 1832 146 86 13 chr9 71658118 71658433 -46204194 + MER44D DNA MER2_type 1 608 -1 9771 154 35 82 chr9 71658437 71659522 -46203105 - L1MB1 LINE L1 -4171 2213 1079 2450 160 26 2 chr9 71659522 71659940 -46202687 - MSTA LTR MaLR 0 428 1 9771 154 35 82 chr9 71659940 71660475 -46202152 - L1MB1 LINE L1 -5305 1079 730 1994 164 0 0 chr9 71660475 71660774 -46201853 - AluJb SINE Alu -13 299 1 9771 154 35 82 chr9 71660774 71661455 -46201172 - L1MB1 LINE L1 -5654 730 19 1167 175 47 0 chr9 71661458 71661692 -46200935 - L1MEc LINE L1 -4762 1664 1420 212 329 0 13 chr9 71661742 71661818 -46200809 - MER5A DNA MER1_type 0 189 115 * 226 289 22 22 chr9 71661765 71661855 -46200772 + MER5A DNA MER1_type 35 124 -65 2553 113 8 8 chr9 71662241 71662605 -46200022 + THE1B LTR MaLR 1 364 0 193 274 0 0 chr9 71663505 71663556 -46199071 + MER5A DNA MER1_type 128 178 -11 241 200 17 0 chr9 71663574 71663634 -46198993 + L2 LINE L2 2994 3054 -218 14403 143 23 12 chr9 71665406 71666058 -46196569 + Tigger1 DNA MER2_type 2 646 -1772 2404 82 0 3 chr9 71666058 71666350 -46196277 + AluSp SINE Alu 1 291 -22 14403 143 23 12 chr9 71666350 71668088 -46194539 + Tigger1 DNA MER2_type 646 2417 -1 749 268 7 43 chr9 71668365 71668379 -46194248 - L1MEc LINE L1 -3905 2702 2689 1560 202 28 14 chr9 71668379 71668731 -46193896 - L1MC2 LINE L1 -15 6329 5973 749 268 7 43 chr9 71668731 71668825 -46193802 - L1MEc LINE L1 -3918 2689 2593 2272 112 0 16 chr9 71668825 71669139 -46193488 - AluSq SINE Alu -3 310 2 749 268 7 43 chr9 71669139 71669328 -46193299 - L1MEc LINE L1 -4014 2593 2415 900 130 0 43 chr9 71669329 71669467 -46193160 - FLAM_C SINE Alu -11 132 1 446 212 53 0 chr9 71669470 71669602 -46193025 - L1MEc LINE L1 -4042 2384 2246 382 119 0 0 chr9 71669624 71669683 -46192944 - L1MEc LINE L1 -4226 2200 2142 1525 172 19 114 chr9 71669688 71670065 -46192562 - MER41D LTR ERV1 0 557 217 656 121 40 0 chr9 71670065 71670164 -46192463 - AluSg/x SINE Alu -15 297 195 398 192 29 51 chr9 71670673 71670999 -46191628 + G-rich Low_complexity Low_complexity 1 318 0 221 194 28 42 chr9 71671016 71671088 -46191539 + GA-rich Low_complexity Low_complexity 1 71 0 201 175 48 36 chr9 71671100 71671266 -46191361 + GA-rich Low_complexity Low_complexity 1 168 0 23 0 0 0 chr9 71671556 71671579 -46191048 + AT_rich Low_complexity Low_complexity 1 23 0 376 254 11 0 chr9 71672993 71673170 -46189457 + GA-rich Low_complexity Low_complexity 1 179 0 2099 128 0 0 chr9 71673363 71673653 -46188974 + AluSx SINE Alu 2 291 -21 1187 154 0 55 chr9 71673654 71673812 -46188815 - MER41D LTR ERV1 -349 208 63 1642 172 7 7 chr9 71673812 71674124 -46188503 - AluJo SINE Alu 0 314 3 1187 154 0 55 chr9 71674124 71674184 -46188443 - MER41D LTR ERV1 -494 63 1 296 135 14 108 chr9 71674194 71674268 -46188359 - Ricksha DNA DNA -2332 914 848 2245 181 24 91 chr9 71674280 71674820 -46187807 - MLT2B3 LTR ERVL -39 515 12 718 182 55 22 chr9 71674890 71675071 -46187556 - L1MEc LINE L1 -4417 2009 1823 5360 173 42 7 chr9 71675102 71675231 -46187396 - L1MA9 LINE L1 0 7731 7608 252 0 0 0 chr9 71675231 71675259 -46187368 + (TG)n Simple_repeat Simple_repeat 2 29 0 5360 173 42 7 chr9 71675259 71676405 -46186222 - L1MA9 LINE L1 -123 7608 6413 3706 113 0 11 chr9 71676408 71676950 -46185677 - L1MA3 LINE L1 -1 7723 7188 25 31 0 0 chr9 71676954 71676986 -46185641 + AT_rich Low_complexity Low_complexity 1 32 0 875 99 0 0 chr9 71676994 71677105 -46185522 - FLAM_C SINE Alu -32 111 1 3699 136 15 4 chr9 71677105 71678077 -46184550 - L1MA3 LINE L1 -520 7204 6218 * 5426 102 14 7 chr9 71678074 71678890 -46183737 + L1M1 LINE L1 2634 3454 -4111 1051 171 219 4 chr9 71678892 71679138 -46183489 - L1MA3 LINE L1 -7247 318 20 6440 177 46 3 chr9 71679147 71680439 -46182188 - L1MA9 LINE L1 -1145 6420 5073 2585 157 29 2 chr9 71680440 71680853 -46181774 - MSTB1 LTR MaLR 0 432 9 4670 217 123 22 chr9 71680866 71681435 -46181192 - L1MA9 LINE L1 -2494 5071 4561 1717 215 42 16 chr9 71681435 71681821 -46180806 + MSTD LTR MaLR 1 396 0 4670 217 123 22 chr9 71681821 71682957 -46179670 - L1MA9 LINE L1 -3004 4561 3157 2341 100 0 0 chr9 71682957 71683246 -46179381 - AluSg SINE Alu -21 289 1 4670 217 123 22 chr9 71683246 71683447 -46179180 - L1MA9 LINE L1 -4408 3157 2978 2592 247 80 40 chr9 71683430 71684651 -46177976 - L1P3 LINE L1 -4740 1135 10 * 2698 236 54 57 chr9 71684667 71684980 -46177647 - L1M2 LINE L1 -4246 1789 1477 739 111 9 0 chr9 71684980 71685088 -46177539 + HY1 scRNA scRNA 1 109 -3 1676 109 0 4 chr9 71685088 71685317 -46177310 - AluSq SINE Alu -11 302 75 2698 236 54 57 chr9 71685317 71685417 -46177210 - L1M2 LINE L1 -4557 1478 1379 2087 106 0 0 chr9 71685417 71685682 -46176945 + AluSx SINE Alu 26 290 -22 2698 236 54 57 chr9 71685682 71685836 -46176791 - L1M2 LINE L1 -4656 1379 1226 2279 108 7 0 chr9 71685836 71686132 -46176495 + AluSc SINE Alu 1 298 -11 2698 236 54 57 chr9 71686132 71687697 -46174930 - L1M2 LINE L1 -4809 1226 11 409 154 77 29 chr9 71687688 71687792 -46174835 - L1MCa LINE L1 -4575 1851 1743 * 3143 136 30 17 chr9 71687797 71688075 -46174552 - L1MC1 LINE L1 -5 6328 6038 2159 131 0 0 chr9 71688075 71688372 -46174255 - AluSx SINE Alu -14 298 2 3143 136 30 17 chr9 71688372 71688629 -46173998 - L1MC1 LINE L1 -295 6038 5786 763 156 16 0 chr9 71688736 71688864 -46173763 - L1MC1 LINE L1 -555 5778 5649 985 145 6 6 chr9 71688864 71689033 -46173594 + L1MB3 LINE L1 6005 6176 -7 427 215 77 64 chr9 71689118 71689225 -46173402 + L1ME LINE L1 5589 5693 -428 2366 95 3 0 chr9 71689225 71689521 -46173106 + AluSx SINE Alu 2 298 -14 427 215 77 64 chr9 71689521 71689646 -46172981 + L1ME LINE L1 5693 5824 -297 1579 169 11 0 chr9 71689647 71689907 -46172720 + AluJb SINE Alu 4 266 -46 342 322 121 10 chr9 71690155 71690354 -46172273 - MIR SINE MIR -8 254 34 1572 205 43 94 chr9 71690425 71690986 -46171641 - LTR55 LTR ERV -9 539 8 5238 195 30 16 chr9 71691258 71693144 -46169483 - L1MB4 LINE L1 -18 6162 4249 2332 80 0 29 chr9 71693144 71693455 -46169172 - AluY SINE Alu -9 302 1 5238 195 30 16 chr9 71693455 71693696 -46168931 - L1MB4 LINE L1 -1931 4249 4013 1059 257 166 16 chr9 71693811 71694262 -46168365 + LTR33 LTR ERVL 1 519 -2 831 281 109 62 chr9 71694314 71694780 -46167847 - L2 LINE L2 0 3313 2826 906 204 112 42 chr9 71695485 71695770 -46166857 + L1MC5 LINE L1 7610 7914 -47 438 267 52 107 chr9 71696131 71696266 -46166361 + L1ME4a LINE L1 5255 5396 -725 1531 168 23 59 chr9 71696266 71696569 -46166058 + AluJo SINE Alu 1 292 -20 438 267 52 107 chr9 71696569 71696907 -46165720 + L1ME4a LINE L1 5396 5696 -425 1636 159 4 26 chr9 71696907 71697178 -46165449 + AluJb SINE Alu 23 287 -25 438 267 52 107 chr9 71697178 71697289 -46165338 + L1ME4a LINE L1 5696 5812 -309 269 241 38 13 chr9 71697318 71697397 -46165230 - L1ME LINE L1 -244 5877 5797 303 280 64 8 chr9 71697443 71697568 -46165059 + L1ME4a LINE L1 5990 6121 0 2209 116 0 3 chr9 71697905 71698208 -46164419 + AluSx SINE Alu 1 302 -10 315 245 98 90 chr9 71698519 71698764 -46163863 - HAL1 LINE L1 -4 2503 2257 1653 251 72 66 chr9 71699078 71699388 -46163239 - HAL1 LINE L1 -725 1782 1475 1054 199 27 80 chr9 71699388 71699531 -46163096 - MER33 DNA MER1_type -2262 323 174 2346 91 0 13 chr9 71699531 71699838 -46162789 + AluSg SINE Alu 1 303 -7 1054 199 27 80 chr9 71699838 71700031 -46162596 - MER33 DNA MER1_type -2411 174 5 1653 251 72 66 chr9 71700031 71700553 -46162074 - HAL1 LINE L1 -1032 1475 945 313 329 8 64 chr9 71700574 71700596 -46162031 - HAL1 LINE L1 -1527 980 958 2085 131 0 0 chr9 71700596 71700909 -46161718 + AluSx SINE Alu 1 313 0 313 329 8 64 chr9 71700909 71701134 -46161493 - HAL1 LINE L1 -1549 958 746 22 0 0 0 chr9 71701150 71701172 -46161455 + AT_rich Low_complexity Low_complexity 1 22 0 573 250 104 65 chr9 71701386 71701563 -46161064 - LTR24B LTR ERV1 0 467 287 1879 145 3 17 chr9 71701563 71701860 -46160767 - AluSx SINE Alu -19 293 1 573 250 104 65 chr9 71701860 71702007 -46160620 - LTR24B LTR ERV1 -180 287 147 348 203 0 14 chr9 71702109 71702183 -46160444 - LTR24B LTR ERV1 -499 77 5 256 290 14 0 chr9 71702188 71702208 -46160419 + CT-rich Low_complexity Low_complexity 4 22 -51 2512 53 0 0 chr9 71702208 71702510 -46160117 - AluY SINE Alu -9 302 1 256 290 14 0 chr9 71702510 71702558 -46160069 + CT-rich Low_complexity Low_complexity 22 73 0 304 312 97 19 chr9 71702561 71702715 -46159912 - HAL1 LINE L1 -1964 543 378 295 276 41 10 chr9 71702835 71702933 -46159694 - HAL1 LINE L1 -2360 147 47 3710 102 89 48 chr9 71703111 71703719 -46158908 - LTR10E LTR ERV1 0 633 1 38 39 0 0 chr9 71704035 71704087 -46158540 + AT_rich Low_complexity Low_complexity 1 52 0 22 35 0 0 chr9 71705000 71705029 -46157598 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr9 71705607 71705627 -46157000 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 1639 177 7 7 chr9 71705627 71705910 -46156717 - AluJb SINE Alu -29 283 1 2125 117 4 0 chr9 71706340 71706643 -46155984 + AluSp SINE Alu 1 304 0 24 0 0 0 chr9 71706682 71706706 -46155921 + AT_rich Low_complexity Low_complexity 1 24 0 243 216 52 62 chr9 71706892 71706989 -46155638 + L1ME LINE L1 70 165 -5905 2159 103 31 0 chr9 71707041 71707332 -46155295 - AluSx SINE Alu -12 300 1 277 185 37 0 chr9 71707406 71707460 -46155167 + L1MDa LINE L1 384 439 -6205 291 277 38 24 chr9 71707890 71708055 -46154572 + L1MDa LINE L1 1035 1208 -5341 1984 124 45 7 chr9 71708072 71708362 -46154265 + AluSx SINE Alu 1 301 -11 5035 238 72 37 chr9 71708831 71710073 -46152554 + L1M4 LINE L1 2386 3583 -2563 231 36 0 0 chr9 71710073 71710101 -46152526 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 5035 238 72 37 chr9 71710101 71710652 -46151975 + L1M4 LINE L1 3583 4249 -1897 2420 77 0 16 chr9 71710652 71710963 -46151664 + AluSx SINE Alu 1 306 -6 5035 238 72 37 chr9 71710963 71711032 -46151595 + L1M4 LINE L1 4249 4314 -1832 1705 119 8 8 chr9 71711137 71711388 -46151239 - AluSq SINE Alu -29 284 34 1751 134 11 0 chr9 71711505 71711767 -46150860 + AluSq SINE Alu 45 309 -4 765 110 110 0 chr9 71711769 71711887 -46150740 - MER57B LTR ERV1 -173 261 131 22 0 0 0 chr9 71712228 71712250 -46150377 + AT_rich Low_complexity Low_complexity 1 22 0 2014 128 28 0 chr9 71762943 71763231 -46099396 - AluSq SINE Alu -17 296 1 1857 169 0 20 chr9 71763231 71763532 -46099095 - AluSx SINE Alu -17 295 1 27 29 0 0 chr9 71763699 71763733 -46098894 + AT_rich Low_complexity Low_complexity 1 34 0 1262 96 141 0 chr9 71764092 71764299 -46098328 - AluSg/x SINE Alu 0 316 85 2493 82 0 0 chr9 71764507 71764813 -46097814 - AluY SINE Alu -5 306 1 1779 151 86 18 chr9 71764967 71765304 -46097323 - MER46B DNA MER2_type 0 236 2 25 51 0 0 chr9 71766543 71766582 -46096045 + AT_rich Low_complexity Low_complexity 1 39 0 241 255 66 104 chr9 71767823 71768082 -46094545 - L1MC4 LINE L1 -30 8012 7764 335 115 0 0 chr9 71768093 71768145 -46094482 - Alu SINE Alu -9 293 242 2157 114 3 0 chr9 71768407 71768697 -46093930 - AluSx SINE Alu -21 291 1 2544 11 0 0 chr9 71769012 71769284 -46093343 - AluYa5 SINE Alu -4 307 36 1993 144 3 13 chr9 71772060 71772366 -46090261 - AluSx SINE Alu -9 303 1 352 238 143 40 chr9 71773418 71773544 -46089083 - L1ME4a LINE L1 -6 6115 5977 1121 126 6 55 chr9 71773912 71774095 -46088532 - FAM SINE Alu -1 174 1 2308 109 0 3 chr9 71774447 71774750 -46087877 - AluSx SINE Alu -10 302 1 1888 183 0 7 chr9 71775190 71775491 -46087136 + AluJb SINE Alu 2 300 -12 3301 165 11 106 chr9 71775624 71775890 -46086737 - L1MB7 LINE L1 -138 6046 5756 1615 136 8 23 chr9 71775890 71776148 -46086479 - AluJo SINE Alu -58 254 1 3301 165 11 106 chr9 71776148 71776395 -46086232 - L1MB7 LINE L1 -428 5756 5487 2032 125 26 33 chr9 71776395 71776700 -46085927 - AluSx SINE Alu 0 312 10 3301 165 11 106 chr9 71776700 71777037 -46085590 - L1MB7 LINE L1 -697 5487 5296 2372 110 0 0 chr9 71777037 71777337 -46085290 - AluSx SINE Alu -12 300 1 3301 165 11 106 chr9 71777337 71777404 -46085223 - L1MB7 LINE L1 -888 5296 5224 733 269 108 6 chr9 71777396 71777712 -46084915 + L1ME1 LINE L1 5815 6162 -4 * 274 357 209 9 chr9 71778410 71778830 -46083797 + L2 LINE L2 2236 2739 -575 392 286 134 8 chr9 71779008 71779127 -46083500 + L2 LINE L2 3162 3295 -18 2529 80 3 0 chr9 71779218 71779530 -46083097 + AluSp SINE Alu 1 313 0 252 309 0 0 chr9 71779870 71779938 -46082689 + MIR SINE MIR 94 161 -101 198 0 0 0 chr9 71780395 71780417 -46082210 + (A)n Simple_repeat Simple_repeat 1 22 0 30 69 0 0 chr9 71781805 71781863 -46080764 + GC_rich Low_complexity Low_complexity 1 58 0 217 272 68 58 chr9 71784078 71784181 -46078446 + MIR3 SINE MIR 90 193 -15 943 220 63 22 chr9 71784282 71784550 -46078077 - L1MD3 LINE L1 -8 7987 7709 275 217 48 0 chr9 71784561 71784644 -46077983 + MER113 DNA MER1_type? 131 217 -304 185 228 133 95 chr9 71785803 71786044 -46076583 - L2 LINE L2 -559 2755 2506 4867 185 20 20 chr9 71787864 71788783 -46073844 - L1MB5 LINE L1 0 6174 5255 2452 99 3 0 chr9 71788783 71789095 -46073532 - AluSp SINE Alu 0 313 1 4867 185 20 20 chr9 71789095 71790008 -46072619 - L1MB5 LINE L1 -919 5255 4344 185 276 92 0 chr9 71791720 71791796 -46070831 - L2 LINE L2 -17 3255 3173 2283 115 0 3 chr9 71793552 71793857 -46068770 + AluSg SINE Alu 1 304 -6 272 265 0 29 chr9 71794157 71794225 -46068402 + L3 LINE CR1 1336 1401 -176 643 208 58 48 chr9 71794268 71794475 -46068152 - MER20 DNA MER1_type -2 217 9 239 259 247 29 chr9 71794958 71795201 -46067426 - L1MC/D LINE L1 -2113 5695 5400 487 244 17 0 chr9 71795517 71795636 -46066991 - L1MD3 LINE L1 -7 7988 7868 312 27 0 0 chr9 71798024 71798061 -46064566 + (A)n Simple_repeat Simple_repeat 1 37 0 240 343 69 0 chr9 71798226 71798328 -46064299 - L3 LINE CR1 -507 1070 962 23 78 0 0 chr9 71798526 71798577 -46064050 + AT_rich Low_complexity Low_complexity 1 51 0 315 348 22 36 chr9 71798591 71798729 -46063898 + L1ME4a LINE L1 5746 5881 -240 453 84 127 0 chr9 71799768 71799839 -46062788 + MADE1 DNA Mariner 1 80 0 202 213 0 0 chr9 71801302 71801349 -46061278 + (TGAA)n Simple_repeat Simple_repeat 4 50 0 1321 107 11 0 chr9 71801688 71801865 -46060762 - AluSg/x SINE Alu 0 310 132 2427 76 10 0 chr9 71801865 71802168 -46060459 - AluY SINE Alu -5 306 1 268 197 33 0 chr9 71804719 71804780 -46057847 - MER53 DNA DNA -126 63 1 416 135 39 34 chr9 71804973 71805151 -46057476 + (TG)n Simple_repeat Simple_repeat 2 180 0 257 252 148 0 chr9 71805414 71805529 -46057098 + MIR SINE MIR 53 184 -78 450 239 0 0 chr9 71805686 71805778 -46056849 - 5S rRNA rRNA -28 93 2 416 305 86 0 chr9 71806878 71807029 -46055598 - L1MEd LINE L1 -4963 1156 993 2339 107 3 3 chr9 71807131 71807439 -46055188 - AluSx SINE Alu -4 308 1 201 318 98 38 chr9 71808541 71808777 -46053850 - L2 LINE L2 -254 3059 2810 309 274 12 0 chr9 71808823 71808907 -46053720 + L1ME LINE L1 5579 5663 -458 2391 79 3 16 chr9 71809515 71809832 -46052795 + AluSq SINE Alu 1 313 0 1341 121 0 53 chr9 71810637 71810844 -46051783 - AluJb SINE Alu -116 196 1 599 239 108 6 chr9 71810844 71811134 -46051493 - L1MCa LINE L1 -1538 4888 4549 626 86 0 35 chr9 71811156 71811272 -46051355 + (GA)n Simple_repeat Simple_repeat 1 112 0 220 0 27 54 chr9 71811271 71811308 -46051319 + (GGAAA)n Simple_repeat Simple_repeat 4 39 0 * 539 191 29 0 chr9 71811350 71811455 -46051172 - L1MCa LINE L1 -1989 4437 4330 901 173 0 0 chr9 71811458 71811597 -46051030 + FRAM SINE Alu 21 159 -17 5440 191 115 34 chr9 71811621 71812952 -46049675 - L1MCa LINE L1 -2401 4025 2803 2146 141 20 0 chr9 71812952 71813256 -46049371 - AluSg SINE Alu 0 310 1 5440 191 115 34 chr9 71813256 71813882 -46048745 - L1MCa LINE L1 -3623 2803 2229 219 69 0 0 chr9 71813882 71813911 -46048716 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5440 191 115 34 chr9 71813911 71813932 -46048695 - L1MCa LINE L1 -4197 2229 814 2280 101 3 3 chr9 71814394 71814690 -46047937 + AluSq SINE Alu 1 296 -17 378 336 69 0 chr9 71814923 71815155 -46047472 - MARNA DNA Mariner -60 526 279 355 336 70 0 chr9 71815563 71815691 -46046936 + L2 LINE L2 3123 3259 -13 2031 143 7 0 chr9 71816540 71816833 -46045794 + AluSx SINE Alu 1 295 -17 211 297 39 39 chr9 71817933 71818061 -46044566 + L2 LINE L2 2922 3049 -223 2496 93 0 0 chr9 71818687 71818999 -46043628 - AluSx SINE Alu 0 312 1 1186 120 30 5 chr9 71819152 71819352 -46043275 - L1MB3 LINE L1 -1 6182 5978 2130 62 7 26 chr9 71819373 71819645 -46042982 + AluY SINE Alu 24 290 -21 257 222 56 56 chr9 71820504 71820594 -46042033 + L2 LINE L2 3162 3251 -62 492 258 67 0 chr9 71820767 71820945 -46041682 + L1MC4 LINE L1 7350 7539 -503 270 296 0 0 chr9 71820974 71821045 -46041582 + MER58A DNA MER1_type 42 112 0 2324 85 23 10 chr9 71821674 71821979 -46040648 + AluSq SINE Alu 1 309 -4 487 268 58 100 chr9 71822312 71822693 -46039934 + L1MC4a LINE L1 6480 6844 -964 246 281 105 41 chr9 71822993 71823164 -46039463 + L1MC4 LINE L1 7668 7849 -193 225 218 0 0 chr9 71823176 71823231 -46039396 + L1MC4 LINE L1 7987 8041 -1 865 207 84 59 chr9 71823329 71823686 -46038941 + L1MD3 LINE L1 6678 7043 -952 486 156 165 0 chr9 71823689 71823798 -46038829 + MER7A DNA MER2_type 5 129 -217 1756 138 15 62 chr9 71824767 71825092 -46037535 - AluJo SINE Alu -2 310 1 183 247 188 12 chr9 71825204 71825289 -46037338 - MIR SINE MIR -74 188 89 897 204 0 0 chr9 71825989 71826279 -46036348 + (ATG)n Simple_repeat Simple_repeat 1 290 0 216 158 0 0 chr9 71826279 71826317 -46036310 + (ATGGTG)n Simple_repeat Simple_repeat 2 39 0 180 135 0 0 chr9 71826419 71826456 -46036171 + (CCCCCG)n Simple_repeat Simple_repeat 5 41 0 24 32 0 0 chr9 71826944 71826975 -46035652 + GC_rich Low_complexity Low_complexity 1 31 0 330 202 125 19 chr9 71828969 71829073 -46033554 + MIR SINE MIR 119 233 -29 195 42 0 0 chr9 71831910 71831934 -46030693 + (TA)n Simple_repeat Simple_repeat 1 24 0 187 294 20 0 chr9 71834971 71835022 -46027605 + MIR SINE MIR 176 227 -35 5485 146 23 15 chr9 71835241 71836222 -46026405 - Tigger1 DNA MER2_type -63 2355 1367 549 272 47 21 chr9 71836318 71836509 -46026118 - MLT1D LTR MaLR -309 196 1 2272 97 0 0 chr9 71837841 71838131 -46024496 + AluSg SINE Alu 1 290 -20 183 250 83 0 chr9 71838246 71838306 -46024321 - MIR3 SINE MIR -129 79 15 2196 145 3 0 chr9 71839005 71839316 -46023311 - AluSx SINE Alu 0 312 1 201 200 250 0 chr9 71839608 71839668 -46022959 - L2 LINE L2 -1 3271 3197 612 306 12 0 chr9 71839818 71839988 -46022639 + L2 LINE L2 2617 2788 -526 372 43 0 0 chr9 71841770 71841816 -46020811 + (CA)n Simple_repeat Simple_repeat 2 47 0 3426 180 66 6 chr9 71842277 71843001 -46019626 + L1MC1 LINE L1 5447 6214 -119 25 31 0 0 chr9 71843039 71843071 -46019556 + AT_rich Low_complexity Low_complexity 1 32 0 252 334 114 43 chr9 71843100 71843468 -46019159 - L2 LINE L2 -40 3232 2839 444 239 154 47 chr9 71843740 71844262 -46018365 - L1MC3 LINE L1 -242 5922 5288 2684 58 0 0 chr9 71844262 71844570 -46018057 - AluY SINE Alu -3 308 1 444 239 154 47 chr9 71844570 71844788 -46017839 - L1MC3 LINE L1 -876 5288 5095 440 273 11 27 chr9 71844791 71844974 -46017653 + L1MC5 LINE L1 7732 7911 -50 379 303 178 29 chr9 71845005 71845619 -46017008 - L1MC3 LINE L1 -1053 5093 4389 2355 108 0 19 chr9 71845796 71846112 -46016515 - AluSg SINE Alu 0 310 1 518 338 85 25 chr9 71846254 71846724 -46015903 - L2 LINE L2 -571 2743 2246 22 0 0 0 chr9 71848743 71848765 -46013862 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr9 71849115 71849146 -46013481 + AT_rich Low_complexity Low_complexity 1 31 0 225 244 49 37 chr9 71849880 71849962 -46012665 - AluSc SINE Alu -216 83 1 430 264 29 21 chr9 71850251 71850391 -46012236 - L3 LINE CR1 -155 1422 1282 1979 144 3 0 chr9 71851004 71851302 -46011325 - AluSx SINE Alu -13 299 1 218 217 50 0 chr9 71851306 71851366 -46011261 + T-rich Low_complexity Low_complexity 3 65 0 222 288 12 12 chr9 71852521 71852601 -46010026 + (TG)n Simple_repeat Simple_repeat 1 80 0 2226 127 22 30 chr9 71853202 71853572 -46009055 - THE1C LTR MaLR -8 367 1 244 201 70 54 chr9 71856243 71856356 -46006271 + MIR SINE MIR 35 149 -63 379 247 31 10 chr9 71856598 71856695 -46005932 + MER5A DNA MER1_type 91 189 0 1363 114 100 5 chr9 71858040 71858250 -46004377 - MER30 DNA MER1_type 0 230 1 2187 88 7 7 chr9 71858459 71858756 -46003871 - AluSq SINE Alu -16 297 1 1433 191 35 11 chr9 71859099 71859382 -46003245 - AluJo SINE Alu -22 290 1 970 204 0 0 chr9 71859419 71859576 -46003051 + FAM SINE Alu 1 157 -18 21 0 0 0 chr9 71859720 71859741 -46002886 + AT_rich Low_complexity Low_complexity 1 21 0 1300 178 134 7 chr9 71860550 71860825 -46001802 + AluJo SINE Alu 1 310 -2 1944 153 30 3 chr9 71861020 71861315 -46001312 + AluSx SINE Alu 1 303 -9 215 237 171 0 chr9 71863799 71863875 -45998752 + MIR SINE MIR 46 134 -128 206 238 48 95 chr9 71864518 71864623 -45998004 + MER5A DNA MER1_type 85 184 -5 185 229 0 42 chr9 71866566 71866614 -45996013 + MIR SINE MIR 74 119 -143 2311 112 0 0 chr9 71866727 71867031 -45995596 - AluSx SINE Alu -4 308 5 247 288 0 0 chr9 71867743 71867816 -45994811 - L1ME LINE L1 -239 5882 5810 212 163 0 0 chr9 71869729 71869772 -45992855 + A-rich Low_complexity Low_complexity 4 46 0 467 156 46 28 chr9 71869807 71869916 -45992711 - Charlie2 DNA MER1_type -108 2754 2644 544 272 71 5 chr9 71869950 71870134 -45992493 + MIR SINE MIR 49 244 -18 1447 230 65 13 chr9 71870154 71870541 -45992086 - Charlie2 DNA MER1_type -599 2263 1857 222 37 0 0 chr9 71872194 71872221 -45990406 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 294 243 191 63 chr9 71874387 71874576 -45988051 + MIR SINE MIR 50 262 0 540 0 0 0 chr9 71874811 71874871 -45987756 + (CA)n Simple_repeat Simple_repeat 2 61 0 1920 134 13 17 chr9 71875078 71875377 -45987250 + AluSx SINE Alu 1 298 -14 993 204 19 10 chr9 71877463 71877669 -45984958 + MER82 DNA MER2_type 4 211 -442 1613 104 5 9 chr9 71877769 71877990 -45984637 + AluJb SINE Alu 76 295 -17 612 184 102 0 chr9 71877992 71878139 -45984488 + Charlie5 DNA MER1_type 2424 2585 -27 1796 170 7 0 chr9 71879061 71879378 -45983249 - AluJb SINE Alu 0 319 1 208 148 56 0 chr9 71879421 71879475 -45983152 + (TTAA)n Simple_repeat Simple_repeat 1 57 0 285 105 0 0 chr9 71879550 71879588 -45983039 + tRNA-Cys-TGC tRNA tRNA 1 38 -37 780 70 193 0 chr9 71879660 71879774 -45982853 - MER85 DNA T2_type -3 136 1 231 266 85 32 chr9 71880059 71880153 -45982474 + MIR SINE MIR 153 251 -11 311 244 81 43 chr9 71880166 71880317 -45982310 - L1MC5 LINE L1 -1058 6984 6751 2346 109 0 0 chr9 71880336 71880647 -45981980 - AluSx SINE Alu 0 312 2 368 233 90 108 chr9 71881045 71881268 -45981359 + MER20 DNA MER1_type 1 219 0 2479 196 131 20 chr9 71885389 71886056 -45976571 + L1MD2 LINE L1 5426 6092 -267 2341 82 0 0 chr9 71886228 71886520 -45976107 - AluSg SINE Alu -18 292 1 338 287 59 15 chr9 71887634 71887770 -45974857 - MER112 DNA MER1_type -27 233 92 216 302 93 23 chr9 71888267 71888353 -45974274 + L2 LINE L2 3132 3223 -49 1078 151 21 21 chr9 71888745 71888931 -45973696 + MER20 DNA MER1_type 34 219 0 2153 124 17 0 chr9 71889377 71889676 -45972951 - AluSg SINE Alu -6 304 1 264 250 219 23 chr9 71889677 71889805 -45972822 + L2 LINE L2 3161 3313 0 22 0 0 0 chr9 71890722 71890744 -45971883 + AT_rich Low_complexity Low_complexity 1 22 0 1317 186 5 5 chr9 71890767 71890988 -45971639 + MER46A DNA MER2_type 16 236 0 656 148 8 31 chr9 71890988 71891116 -45971511 - MER67C LTR ERV1 -85 625 501 3951 164 37 47 chr9 71891242 71891333 -45971294 - L1MB3 LINE L1 -1 6182 6092 2055 114 10 14 chr9 71891333 71891623 -45971004 - AluSx SINE Alu -23 289 1 3951 164 37 47 chr9 71891623 71892344 -45970283 - L1MB3 LINE L1 -91 6092 5378 559 208 81 20 chr9 71892942 71893091 -45969536 - MIR SINE MIR -1 261 104 228 354 24 30 chr9 71994593 71994757 -45867870 + L2 LINE L2 2861 3023 -290 1319 182 0 40 chr9 71995827 71996124 -45866503 - L1M4 LINE L1 -2223 3923 3639 390 261 87 56 chr9 71996404 71996599 -45866028 - HAL1 LINE L1 -1205 1302 1102 194 191 21 0 chr9 71996652 71996699 -45865928 + CT-rich Low_complexity Low_complexity 3 50 0 369 333 7 20 chr9 71997681 71997834 -45864793 + C-rich Low_complexity Low_complexity 2 152 0 209 318 0 35 chr9 71997991 71998076 -45864551 + CT-rich Low_complexity Low_complexity 5 86 0 245 284 10 20 chr9 71998220 71998340 -45864287 + C-rich Low_complexity Low_complexity 1 118 0 271 213 25 0 chr9 71998510 71998590 -45864037 + (TCCA)n Simple_repeat Simple_repeat 4 85 0 586 167 0 73 chr9 71998609 71998801 -45863826 + (TCCA)n Simple_repeat Simple_repeat 3 180 0 822 189 0 0 chr9 71998824 71999004 -45863623 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 678 221 0 0 chr9 71999029 71999201 -45863426 + (TCCA)n Simple_repeat Simple_repeat 4 175 0 308 303 61 0 chr9 71999640 71999772 -45862855 - L1M4 LINE L1 -2556 3590 3451 304 332 102 25 chr9 71999852 71999966 -45862661 - HAL1 LINE L1 -1218 1289 1185 279 246 16 8 chr9 71999966 72000088 -45862539 + T-rich Low_complexity Low_complexity 3 125 0 304 332 102 25 chr9 72000088 72000135 -45862492 - HAL1 LINE L1 -1322 1185 985 22 0 0 0 chr9 72001216 72001238 -45861389 + AT_rich Low_complexity Low_complexity 1 22 0 34 0 0 0 chr9 72001265 72001299 -45861328 + AT_rich Low_complexity Low_complexity 1 34 0 339 268 128 49 chr9 72001299 72001542 -45861085 - L1M4 LINE L1 -2812 3334 3073 22 70 0 0 chr9 72001583 72001626 -45861001 + AT_rich Low_complexity Low_complexity 1 43 0 23 54 0 0 chr9 72001785 72001822 -45860805 + AT_rich Low_complexity Low_complexity 1 37 0 331 320 11 40 chr9 72002703 72002878 -45859749 + CT-rich Low_complexity Low_complexity 4 173 0 185 150 0 25 chr9 72003194 72003234 -45859393 + (TTCTC)n Simple_repeat Simple_repeat 3 41 0 226 259 0 0 chr9 72003460 72003514 -45859113 + A-rich Low_complexity Low_complexity 1 54 0 306 262 95 80 chr9 72003514 72003800 -45858827 + L1ME LINE L1 777 3220 -2860 32 0 0 0 chr9 72003845 72003877 -45858750 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr9 72105174 72105202 -45757425 + GC_rich Low_complexity Low_complexity 1 28 0 24 53 0 0 chr9 72105294 72105332 -45757295 + GC_rich Low_complexity Low_complexity 1 38 0 222 37 0 0 chr9 72108721 72108748 -45753879 + (TGGGGG)n Simple_repeat Simple_repeat 2 28 0 231 36 0 0 chr9 72109635 72109663 -45752964 + (CAA)n Simple_repeat Simple_repeat 3 30 0 224 299 0 0 chr9 72109835 72109902 -45752725 + G-rich Low_complexity Low_complexity 1 67 0 666 219 7 84 chr9 72113077 72113351 -45749276 + HsTC2 DNA Tc2 1644 1896 -2 199 226 177 0 chr9 72113374 72113436 -45749191 - L2 LINE L2 -1 3312 3240 294 307 92 28 chr9 72113476 72113623 -45749004 - MIR SINE MIR -61 147 12 399 330 100 14 chr9 72113761 72114110 -45748517 - L2 LINE L2 -122 3191 2813 229 306 5 36 chr9 72114536 72114681 -45747946 + GA-rich Low_complexity Low_complexity 1 209 0 306 287 77 61 chr9 72114810 72115057 -45747570 + L2 LINE L2 2887 3137 -176 236 225 221 46 chr9 72115546 72115666 -45746961 - MIR SINE MIR -67 141 49 461 254 15 37 chr9 72115852 72115986 -45746641 + MIR SINE MIR 63 193 -69 379 250 102 31 chr9 72116305 72116433 -45746194 + L2 LINE L2 3136 3272 0 237 65 0 0 chr9 72116761 72116792 -45745835 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 379 291 57 0 chr9 72117044 72117185 -45745442 + LTR16C LTR ERVL 216 364 -127 217 135 0 77 chr9 72117480 72117532 -45745095 + (GGA)n Simple_repeat Simple_repeat 1 48 0 219 69 0 0 chr9 72117782 72117811 -45744816 + (GGA)n Simple_repeat Simple_repeat 1 29 0 207 204 0 0 chr9 72117898 72117947 -45744680 + (TTCA)n Simple_repeat Simple_repeat 3 51 0 1797 133 3 0 chr9 72117977 72118279 -45744348 + L1MB3 LINE L1 5682 5984 -199 1436 178 103 9 chr9 72118283 72118684 -45743943 + MER70B LTR ERVL 18 467 -5 1102 149 36 5 chr9 72118686 72118880 -45743747 + L1MB3 LINE L1 5982 6181 -2 356 265 61 7 chr9 72119036 72119183 -45743444 - L2 LINE L2 -65 3248 3094 286 267 183 5 chr9 72119330 72119521 -45743106 - L2 LINE L2 -596 2718 2494 2073 133 11 96 chr9 72120269 72120737 -45741890 - LTR12 LTR ERV1 -234 480 53 263 211 0 0 chr9 72120737 72120789 -45741838 - LTR30 LTR ERV1 -670 52 1 202 270 27 40 chr9 72121272 72121346 -45741281 - L2 LINE L2 -40 3232 3160 1287 97 27 0 chr9 72121467 72121652 -45740975 - AluSc SINE Alu 0 309 120 1019 83 8 0 chr9 72121754 72121887 -45740740 - AluSc SINE Alu -175 134 1 733 310 77 31 chr9 72121902 72122380 -45740247 + L2 LINE L2 2812 3311 -2 977 270 66 29 chr9 72122406 72122728 -45739899 - L1ME LINE L1 -487 5683 5325 1734 172 3 20 chr9 72122728 72123025 -45739602 + AluJb SINE Alu 2 293 -19 977 270 66 29 chr9 72123025 72123126 -45739501 - L1ME LINE L1 -845 5325 5229 336 320 24 8 chr9 72123559 72123684 -45738943 + L2 LINE L2 2958 3084 -188 1122 135 0 4 chr9 72123685 72124023 -45738604 + (ACTG)n Simple_repeat Simple_repeat 2 515 0 520 227 32 42 chr9 72124129 72124141 -45738486 + MER113 DNA MER1_type? 123 134 -387 4242 183 13 9 chr9 72124141 72124905 -45737722 - L1MC1 LINE L1 0 6333 5567 520 227 32 42 chr9 72124905 72125108 -45737519 + MER113 DNA MER1_type? 134 336 -185 360 340 32 32 chr9 72125729 72125885 -45736742 + MER91A DNA MER1_type 1 156 -40 250 217 48 60 chr9 72126081 72126164 -45736463 + L2 LINE L2 3191 3272 0 207 293 0 27 chr9 72126867 72126942 -45735685 + CT-rich Low_complexity Low_complexity 4 76 0 195 349 24 12 chr9 72127269 72127352 -45735275 - MIR3 SINE MIR -25 183 100 2341 155 16 5 chr9 72127512 72127898 -45734729 + MLT1B LTR MaLR 1 390 0 208 413 40 8 chr9 72128160 72128286 -45734341 - L2 LINE L2 -9 3263 3134 334 310 97 0 chr9 72128762 72128875 -45733752 - MIR SINE MIR -104 158 35 458 220 70 42 chr9 72129123 72129361 -45733266 + MLT1H LTR MaLR 1 305 -244 1183 173 186 0 chr9 72129468 72129705 -45732922 - AluJo SINE Alu -16 296 16 2052 113 0 0 chr9 72129717 72130123 -45732504 - AluSx SINE Alu 0 406 1 1240 406 21 23 chr9 72130262 72130464 -45732163 - MLT1B LTR MaLR -4 386 184 2122 111 7 7 chr9 72130464 72130770 -45731857 - AluSq SINE Alu -6 307 2 1240 406 21 23 chr9 72130770 72130954 -45731673 - MLT1B LTR MaLR -206 184 1 385 252 25 41 chr9 72131486 72131639 -45730988 + MLT1G1 LTR MaLR 149 329 -213 307 331 127 30 chr9 72131762 72131879 -45730748 + L2 LINE L2 1764 1903 -1411 2206 157 26 23 chr9 72131879 72132268 -45730359 + MLT1B LTR MaLR 1 390 0 307 331 127 30 chr9 72132268 72132316 -45730311 + L2 LINE L2 1903 1945 -1369 636 301 31 22 chr9 72132319 72132545 -45730082 + MIR SINE MIR 2 229 -33 476 338 79 0 chr9 72132698 72132914 -45729713 + L2 LINE L2 2196 2428 -886 4618 42 2 2 chr9 72133098 72133673 -45728954 + L1PA8 LINE L1 5611 6185 0 500 325 28 97 chr9 72133716 72133839 -45728788 + L2 LINE L2 2871 3001 -271 1998 155 0 0 chr9 72133839 72134136 -45728491 - AluJb SINE Alu -14 298 2 500 325 28 97 chr9 72134136 72134434 -45728193 + L2 LINE L2 3001 3263 -9 272 333 25 25 chr9 72135293 72135455 -45727172 - L2 LINE L2 -212 3060 2899 423 276 11 3 chr9 72136000 72136119 -45726508 - MLT1K LTR MaLR -2 586 486 1988 135 7 0 chr9 72136537 72136834 -45725793 - AluSg SINE Alu -7 303 5 580 300 163 3 chr9 72137273 72137580 -45725047 - MER63 DNA MER1_type -56 1004 649 645 282 89 0 chr9 72137794 72138007 -45724620 - MER63 DNA MER1_type -402 658 427 195 286 0 0 chr9 72139564 72139669 -45722958 + GA-rich Low_complexity Low_complexity 1 105 0 580 264 78 4 chr9 72140345 72140534 -45722093 - MER20 DNA MER1_type -34 185 1 2431 76 3 0 chr9 72140707 72141011 -45721616 + AluSp SINE Alu 1 305 -8 472 236 16 24 chr9 72141517 72141640 -45720987 - MIR SINE MIR -60 202 81 394 231 6 6 chr9 72142714 72142874 -45719753 + (CA)n Simple_repeat Simple_repeat 2 161 0 240 161 18 36 chr9 72143098 72143154 -45719473 - MLT1K LTR MaLR -85 503 449 209 247 233 0 chr9 72143702 72143775 -45718852 - MIR SINE MIR -117 145 56 238 288 0 65 chr9 72143865 72144018 -45718609 + (GGGTG)n Simple_repeat Simple_repeat 3 145 0 531 56 0 0 chr9 72144134 72144205 -45718422 + (TTCC)n Simple_repeat Simple_repeat 2 72 0 383 297 89 68 chr9 72144838 72145074 -45717553 - L3 LINE CR1 -458 1119 879 211 296 127 0 chr9 72146197 72146268 -45716359 + MIR3 SINE MIR 77 156 -52 351 318 99 5 chr9 72146459 72146651 -45715976 - MIR SINE MIR -7 255 46 2225 189 37 22 chr9 72146718 72146997 -45715630 - MLT1C LTR MaLR -1 466 176 2425 73 0 16 chr9 72146997 72147176 -45715451 - AluY SINE Alu 0 311 138 192 40 0 0 chr9 72147176 72147201 -45715426 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2425 73 0 16 chr9 72147201 72147337 -45715290 - AluY SINE Alu -173 138 1 2225 189 37 22 chr9 72147337 72147513 -45715114 - MLT1C LTR MaLR -291 176 4 351 295 9 19 chr9 72149467 72149572 -45713055 + MIR SINE MIR 80 183 -79 210 314 195 5 chr9 72150212 72150397 -45712230 + L2 LINE L2 3036 3255 -17 199 326 31 0 chr9 72150932 72151030 -45711597 - MIR SINE MIR -139 123 23 1489 122 0 0 chr9 72151522 72151732 -45710895 + AluSg/x SINE Alu 94 298 -14 520 239 70 21 chr9 72152073 72152275 -45710352 + MER20B DNA MER1_type 2 215 -4 651 196 63 6 chr9 72153633 72153791 -45708836 + MER33 DNA MER1_type 5 171 -153 245 237 227 0 chr9 72153895 72153992 -45708635 - MIR SINE MIR -11 251 133 180 283 120 89 chr9 72155033 72155224 -45707403 - MIR3 SINE MIR -6 202 6 2177 104 164 0 chr9 72155464 72155830 -45706797 + MSTA LTR MaLR 1 426 -2 8899 154 40 1 chr9 72155830 72157386 -45705241 + MSTA-int LTR MaLR 35 1651 0 2384 135 56 15 chr9 72157389 72157797 -45704830 + MSTA LTR MaLR 4 428 0 728 298 134 34 chr9 72157888 72158400 -45704227 - L3 LINE CR1 -10 1567 950 401 265 113 22 chr9 72158853 72159038 -45703589 - HAL1b LINE L1 -437 911 710 1872 131 4 14 chr9 72159280 72159555 -45703072 - AluSx SINE Alu -14 298 27 2192 101 3 26 chr9 72159564 72159870 -45702757 - AluSx SINE Alu -13 299 1 743 272 92 33 chr9 72160046 72160414 -45702213 - L1MEc LINE L1 -5971 425 36 382 307 153 20 chr9 72160560 72160762 -45701865 + MIR SINE MIR 30 258 -4 1590 168 0 41 chr9 72160903 72161171 -45701456 + AluJb SINE Alu 1 257 -55 185 308 0 19 chr9 72161803 72161855 -45700772 + MER5A DNA MER1_type 117 167 -22 360 203 85 25 chr9 72162042 72162160 -45700467 - MIR SINE MIR 0 262 138 3485 142 55 59 chr9 72162162 72162522 -45700105 - L1MC1 LINE L1 0 6333 5973 582 58 12 0 chr9 72162522 72162608 -45700019 - L1PA6 LINE L1 0 6154 6068 3485 142 55 59 chr9 72162608 72162992 -45699635 - L1MC1 LINE L1 -360 5973 5592 678 272 7 7 chr9 72162992 72163139 -45699488 - MIR SINE MIR -111 151 5 1666 189 80 38 chr9 72163159 72163635 -45698992 - LTR54B LTR ERV1 -2 496 1 405 150 38 0 chr9 72163959 72164039 -45698588 + L2 LINE L2 2664 2746 -568 * 775 195 139 71 chr9 72164011 72164278 -45698349 + L2 LINE L2 3025 3309 -4 281 253 23 58 chr9 72164333 72164420 -45698207 + MIR SINE MIR 100 183 -79 572 241 24 6 chr9 72165495 72165661 -45696966 + L1M4 LINE L1 4862 5030 -1116 1663 202 83 64 chr9 72165671 72166129 -45696498 + L1MC3 LINE L1 2477 2952 -3194 545 74 63 0 chr9 72166129 72166224 -45696403 + L1MB3 LINE L1 6081 6181 -2 1663 202 83 64 chr9 72166224 72166405 -45696222 + L1MC3 LINE L1 2952 3128 -3018 1267 248 16 34 chr9 72166413 72166853 -45695774 + L1MC3 LINE L1 3246 3677 -2469 290 261 11 11 chr9 72166835 72166927 -45695700 + L1MC3 LINE L1 3966 4057 -2089 * 24790 56 2 4 chr9 72166926 72170234 -45692393 + L1PA4 LINE L1 1 3303 -2843 5312 35 0 0 chr9 72170220 72170912 -45691715 - L1PA4 LINE L1 -2509 3637 2946 * 14819 31 0 0 chr9 72170912 72173440 -45689187 + L1PA4 LINE L1 3623 6151 -4 672 258 40 65 chr9 72173440 72173715 -45688912 + L1MC3 LINE L1 4041 4308 -1838 1777 92 103 0 chr9 72173715 72173977 -45688650 + L1PA11 LINE L1 5869 6157 -17 2135 211 35 2 chr9 72173978 72174543 -45688084 + L1MC3 LINE L1 4495 5078 -1068 1295 127 0 5 chr9 72174553 72174742 -45687885 - AluJ SINE Alu -17 295 108 33 56 0 0 chr9 72174828 72174882 -45687745 + AT_rich Low_complexity Low_complexity 1 54 0 721 198 109 25 chr9 72174889 72175091 -45687536 + L1MC3 LINE L1 5317 5535 -2250 4835 131 24 6 chr9 72175100 72175930 -45686697 + Tigger1 DNA MER2_type 1574 2418 0 3038 187 41 18 chr9 72175947 72176678 -45685949 + L1MC3 LINE L1 6230 6977 -808 1227 195 210 14 chr9 72177960 72178375 -45684252 + LTR54B LTR ERV1 1 496 -2 678 194 16 0 chr9 72178527 72178651 -45683976 - AluJ SINE Alu -4 308 183 812 127 68 0 chr9 72178659 72178777 -45683850 - AluJ SINE Alu -186 126 1 265 262 139 23 chr9 72180727 72180899 -45681728 + L1ME4a LINE L1 5856 6047 -74 247 180 80 0 chr9 72181260 72181310 -45681317 + MIR SINE MIR 191 244 -18 224 152 87 0 chr9 72181281 72181327 -45681300 + L2 LINE L2 3261 3310 -3 * 4557 149 14 41 chr9 72181768 72183091 -45679536 + L1MA7 LINE L1 4826 6121 -170 775 146 88 0 chr9 72183295 72183466 -45679161 + L1MA7 LINE L1 6106 6291 0 2255 135 0 0 chr9 72183726 72184037 -45678590 - AluSx SINE Alu -1 311 1 393 310 123 0 chr9 72184177 72184364 -45678263 + L2 LINE L2 3104 3313 0 421 243 84 89 chr9 72184601 72184815 -45677812 - MIR SINE MIR -3 259 47 1914 156 3 10 chr9 72185126 72185440 -45677187 + AluJb SINE Alu 1 312 0 612 200 54 8 chr9 72185472 72185602 -45677025 + FLAM_C SINE Alu 1 136 -7 211 383 40 13 chr9 72185704 72185853 -45676774 + L3 LINE CR1 1375 1527 -50 460 317 32 16 chr9 72185910 72186096 -45676531 + MER5A DNA MER1_type 1 189 0 258 298 26 53 chr9 72186127 72186241 -45676386 + MIR SINE MIR 29 139 -123 192 77 0 0 chr9 72186286 72186312 -45676315 + (TATG)n Simple_repeat Simple_repeat 3 28 0 815 190 95 27 chr9 72186466 72186687 -45675940 - MER106A DNA MER1_type 0 236 1 252 267 17 17 chr9 72186690 72186750 -45675877 - MIR SINE MIR -94 114 55 529 247 63 6 chr9 72186752 72186910 -45675717 + Charlie8 DNA MER1_type 2 168 -2249 328 300 112 86 chr9 72187242 72187742 -45674885 - L1M2 LINE L1 -5461 1388 876 275 183 11 129 chr9 72188105 72188198 -45674429 - MLT1J LTR MaLR -173 338 257 317 275 150 0 chr9 72188477 72188597 -45674030 - MIR SINE MIR -27 235 98 2341 97 0 0 chr9 72188963 72189261 -45673366 + AluSx SINE Alu 1 298 -14 483 324 86 73 chr9 72189274 72189669 -45672958 - L2 LINE L2 -1 3271 2872 1153 235 95 33 chr9 72190740 72191076 -45671551 - MLT1E LTR MaLR -31 562 206 870 267 79 26 chr9 72191087 72191578 -45671049 - L1ME LINE L1 -298 5823 5307 42557 36 1 1 chr9 72191791 72197945 -45664682 + L1PA3 LINE L1 2 6152 -3 213 302 0 0 chr9 72198767 72198820 -45663807 + L2 LINE L2 3245 3297 -16 515 248 40 84 chr9 72199045 72199247 -45663380 - MIR SINE MIR -43 219 27 189 291 0 18 chr9 72199744 72199799 -45662828 - L2 LINE L2 0 3272 3219 2473 87 0 0 chr9 72200554 72200863 -45661764 + AluSx SINE Alu 1 309 -3 183 348 171 13 chr9 72200869 72201027 -45661600 - MIR SINE MIR -56 206 24 1405 239 116 2 chr9 72201177 72201617 -45661010 + MLT1E2 LTR MaLR 137 626 0 301 250 111 28 chr9 72201639 72201747 -45660880 + MIR3 SINE MIR 85 201 -7 420 20 0 0 chr9 72202342 72202391 -45660236 + (TTTTA)n Simple_repeat Simple_repeat 5 53 0 2215 106 0 0 chr9 72202402 72202695 -45659932 - AluSx SINE Alu -19 293 1 186 258 0 81 chr9 72202990 72203052 -45659575 + L2 LINE L2 3193 3249 -23 312 312 8 24 chr9 72203563 72203688 -45658939 - L2 LINE L2 0 3313 3191 1724 167 10 10 chr9 72204233 72204526 -45658101 - AluJo SINE Alu -14 298 6 219 222 69 14 chr9 72204662 72204734 -45657893 + MIR SINE MIR 77 152 -110 301 234 0 16 chr9 72204932 72204996 -45657631 - MIR3 SINE MIR -48 160 98 270 358 24 0 chr9 72205147 72205270 -45657357 - L2 LINE L2 -411 2903 2778 205 331 58 16 chr9 72205440 72205561 -45657066 + L3b LINE CR1 1299 1424 -159 407 319 125 35 chr9 72205839 72206607 -45656020 + L2 LINE L2 2240 3077 -195 855 201 149 53 chr9 72207434 72207619 -45655008 + MLT1A2 LTR MaLR 4 170 -204 2376 90 7 0 chr9 72207619 72207929 -45654698 + AluSx SINE Alu 1 312 0 855 201 149 53 chr9 72207929 72208158 -45654469 + MLT1A2 LTR MaLR 170 369 -5 2374 91 0 0 chr9 72208407 72208703 -45653924 - AluSx SINE Alu -16 296 1 4987 199 72 43 chr9 72208815 72208860 -45653767 - L1MDa LINE L1 -4385 2155 2113 2160 101 45 0 chr9 72208860 72209148 -45653479 + AluSx SINE Alu 1 301 -11 4987 199 72 43 chr9 72209148 72210895 -45651732 - L1MDa LINE L1 -4427 2113 18 227 239 45 0 chr9 72211026 72211093 -45651534 - MIR SINE MIR -74 188 119 2240 95 0 0 chr9 72211718 72212001 -45650626 - AluSx SINE Alu -15 297 15 1771 169 42 9 chr9 72212017 72212354 -45650273 + L1MDa LINE L1 18 365 -6175 242 50 50 0 chr9 72212357 72212397 -45650230 + L1MDa LINE L1 1295 1336 -5204 218 250 179 18 chr9 72212549 72212661 -45649966 - MER5A DNA MER1_type -25 164 35 561 308 65 35 chr9 72212985 72213413 -45649214 + ERVL LTR ERVL 857 1297 -4467 1533 194 60 41 chr9 72213439 72213806 -45648821 + MLT1A2 LTR MaLR 1 374 0 278 308 54 8 chr9 72213913 72214043 -45648584 - HAL1 LINE L1 -2361 146 11 412 177 142 21 chr9 72214081 72214222 -45648405 - LTR33A LTR ERVL -27 496 339 587 335 9 18 chr9 72214817 72215035 -45647592 - ERVL LTR ERVL -383 5381 5166 1229 213 144 18 chr9 72215049 72215430 -45647197 - L1ME2 LINE L1 -9 6415 5987 611 251 86 11 chr9 72215436 72215611 -45647016 + LTR41 LTR ERVL 1 188 -585 696 353 33 3 chr9 72216452 72216786 -45645841 + ERVL LTR ERVL 352 695 -5069 * 2906 324 31 40 chr9 72216758 72218121 -45644506 + ERVL LTR ERVL 819 2169 -3595 3093 275 14 14 chr9 72218188 72218992 -45643635 + ERVL LTR ERVL 2168 2971 -2793 2166 169 151 18 chr9 72219033 72219443 -45643184 + MLT2B1 LTR ERVL 10 487 -33 191 86 0 29 chr9 72219443 72219478 -45643149 + (TCTA)n Simple_repeat Simple_repeat 4 37 0 2166 169 151 18 chr9 72219478 72219518 -45643109 + MLT2B1 LTR ERVL 487 520 0 7573 264 57 44 chr9 72219532 72220301 -45642326 + ERVL LTR ERVL 3010 3767 -1997 2431 166 42 2 chr9 72220301 72220711 -45641916 + MSTB LTR MaLR 1 426 0 7573 264 57 44 chr9 72220711 72222651 -45639976 + ERVL LTR ERVL 3767 5755 -9 617 273 33 39 chr9 72222653 72222885 -45639742 + LTR41 LTR ERVL 2 258 -537 288 175 40 71 chr9 72223300 72223398 -45639229 + LTR50 LTR ERVL 680 795 0 2037 208 55 0 chr9 72223399 72223832 -45638795 - L1ME2 LINE L1 -445 5981 5525 1566 256 53 29 chr9 72223847 72224505 -45638122 + LTR51 LTR ERV1 209 659 -12 296 35 69 0 chr9 72224536 72224594 -45638033 + (TA)n Simple_repeat Simple_repeat 1 62 0 626 219 62 47 chr9 72224597 72224789 -45637838 - L1ME2 LINE L1 -916 5490 5296 970 216 9 56 chr9 72224792 72225024 -45637603 + MER58A DNA MER1_type 4 224 0 1106 252 196 5 chr9 72225024 72225452 -45637175 - L1ME2 LINE L1 -1103 5303 4794 778 171 50 161 chr9 72225452 72225774 -45636853 - MLT1A2 LTR MaLR 0 374 89 691 268 77 0 chr9 72225774 72225994 -45636633 - L1ME2 LINE L1 -2266 4140 3904 4444 116 16 2 chr9 72225994 72226633 -45635994 + MER39B LTR ERV1 1 648 -5 2888 146 83 33 chr9 72226639 72227181 -45635446 + MER39B-int LTR ERV1 1 569 -5762 1935 167 68 6 chr9 72227241 72227607 -45635020 + MER39B-int LTR ERV1 871 1259 -5072 5001 155 14 20 chr9 72227607 72228523 -45634104 - L1 LINE L1 -1910 4938 4028 4063 101 22 24 chr9 72228523 72229109 -45633518 - LTR8 LTR ERV1 -106 585 1 1270 176 4 9 chr9 72229109 72229336 -45633291 - HUERS-P1 LTR ERV1 0 6263 6038 4674 176 32 24 chr9 72229336 72230239 -45632388 - L1 LINE L1 -2801 4047 3153 2039 125 28 3 chr9 72230239 72230527 -45632100 - AluSx SINE Alu -17 295 1 4674 176 32 24 chr9 72230527 72231514 -45631113 - L1 LINE L1 -3695 3153 2144 3050 130 31 68 chr9 72231526 72232102 -45630525 - LTR10A LTR ERV1 -54 555 1 2105 196 24 10 chr9 72232102 72232597 -45630030 - L1 LINE L1 -4702 2147 1646 390 305 67 19 chr9 72232753 72233022 -45629605 - L1ME2 LINE L1 -5179 1230 949 285 235 118 29 chr9 72233381 72233517 -45629110 - L1ME2 LINE L1 -5911 485 338 9010 173 16 13 chr9 72233563 72235304 -45627323 - L1PA16 LINE L1 -9 6157 4424 2782 90 0 0 chr9 72235304 72235659 -45626968 - THE1A LTR MaLR 0 355 1 9010 173 16 13 chr9 72235659 72236453 -45626174 - L1PA16 LINE L1 -1742 4424 3616 2592 129 46 7 chr9 72236453 72236865 -45625762 - MSTA LTR MaLR 0 428 1 9010 173 16 13 chr9 72236865 72237098 -45625529 - L1PA16 LINE L1 -2550 3616 3385 407 279 0 51 chr9 72237401 72237559 -45625068 - MIR SINE MIR -73 189 40 1538 236 65 27 chr9 72237594 72238043 -45624584 - MLT1C LTR MaLR -1 466 1 238 260 10 31 chr9 72239709 72239805 -45622822 - L2 LINE L2 -263 3009 2916 340 298 16 8 chr9 72240573 72240694 -45621933 - MLT1I LTR MaLR -225 184 63 300 223 96 0 chr9 72240773 72240867 -45621760 - LTR33 LTR ERVL -414 107 5 1931 179 23 23 chr9 72241415 72241805 -45620822 - MLT1B LTR MaLR 0 390 1 384 279 19 56 chr9 72241826 72241987 -45620640 + MLT1J2 LTR MaLR 244 398 -52 250 311 42 8 chr9 72242272 72242391 -45620236 - MIR3 SINE MIR -17 191 69 730 241 116 73 chr9 72242938 72243287 -45619340 - MER97c DNA MER1_type? 0 1090 715 2274 121 0 3 chr9 72243287 72243600 -45619027 + AluSx SINE Alu 1 312 0 730 241 116 73 chr9 72243600 72243714 -45618913 - MER97c DNA MER1_type? -375 715 607 343 200 78 0 chr9 72243738 72243828 -45618799 - L1MD3 LINE L1 -2 7993 7897 374 157 57 0 chr9 72243909 72243979 -45618648 - L1MD2 LINE L1 -218 6141 6068 17474 68 6 7 chr9 72243980 72245065 -45617562 - HERVL-A1 LTR ERVL -3474 2180 1096 2787 82 0 0 chr9 72245065 72245420 -45617207 + THE1A LTR MaLR 1 355 0 12142 82 8 8 chr9 72245420 72246999 -45615628 + THE1A-int LTR MaLR 1 1579 -1 2628 116 0 0 chr9 72247000 72247355 -45615272 + THE1A LTR MaLR 1 355 0 17474 68 6 7 chr9 72247355 72248330 -45614297 - HERVL-A1 LTR ERVL -4557 1097 117 2297 110 3 0 chr9 72248330 72248638 -45613989 + AluY SINE Alu 1 309 -2 17474 68 6 7 chr9 72248638 72248755 -45613872 - HERVL-A1 LTR ERVL -5537 117 1 287 56 0 0 chr9 72248755 72248791 -45613836 - MLT2A1 LTR ERVL 0 444 409 305 87 43 54 chr9 72248792 72248884 -45613743 + (TTAA)n Simple_repeat Simple_repeat 1 91 0 252 293 0 0 chr9 72249728 72249803 -45612824 - MIR SINE MIR -80 182 108 2305 8 0 0 chr9 72249984 72250227 -45612400 + AluY SINE Alu 61 303 -8 2320 105 0 3 chr9 72250250 72250592 -45612035 + AluSq SINE Alu 1 313 0 2265 95 3 0 chr9 72251472 72251757 -45610870 - AluSq SINE Alu -15 298 13 1034 199 247 51 chr9 72252139 72252391 -45610236 - MLT1E1 LTR MaLR -65 589 388 2247 112 0 0 chr9 72252391 72252687 -45609940 - AluSx SINE Alu -16 296 1 1034 199 247 51 chr9 72252687 72252887 -45609740 - MLT1E1 LTR MaLR -266 388 48 299 266 239 0 chr9 72253119 72253232 -45609395 - MER91C DNA MER1_type 0 140 1 282 248 191 14 chr9 72253637 72253822 -45608805 + MIR SINE MIR 32 242 -20 23 33 0 0 chr9 72254333 72254363 -45608264 + AT_rich Low_complexity Low_complexity 1 30 0 2120 144 55 27 chr9 72254367 72254410 -45608217 - L1MA9 LINE L1 -6 6306 6266 1785 136 9 85 chr9 72254410 72254741 -45607886 + AluJb SINE Alu 1 306 -6 2120 144 55 27 chr9 72254741 72255099 -45607528 - L1MA9 LINE L1 -46 6266 5894 1038 238 14 5 chr9 72255942 72256165 -45606462 + MER58B DNA MER1_type 117 341 0 197 257 69 50 chr9 72256173 72256274 -45606353 - MIR3 SINE MIR -19 189 87 199 183 0 33 chr9 72257310 72257370 -45605257 + GA-rich Low_complexity Low_complexity 3 60 0 886 168 12 12 chr9 72258068 72258241 -45604386 - FRAM SINE Alu -4 172 1 192 152 0 0 chr9 72258820 72258853 -45603774 + A-rich Low_complexity Low_complexity 1 33 0 266 143 18 36 chr9 72260742 72260798 -45601829 + MIR3 SINE MIR 109 163 -45 477 162 30 10 chr9 72261378 72261477 -45601150 + MER50 LTR ERV1 1 101 -633 2139 118 0 10 chr9 72261478 72261774 -45600853 - AluSx SINE Alu -19 293 1 1527 186 135 77 chr9 72261792 72262162 -45600465 + LTR36 LTR ERV1 30 444 -167 2302 96 0 20 chr9 72262162 72262464 -45600163 - AluSg SINE Alu -14 296 1 1527 186 135 77 chr9 72262464 72262641 -45599986 + LTR36 LTR ERV1 444 609 -2 3695 186 45 121 chr9 72262644 72263033 -45599594 - L1ME1 LINE L1 -145 6090 5673 4156 88 15 2 chr9 72263033 72263580 -45599047 - MER41A LTR ERV1 0 554 1 3695 186 45 121 chr9 72263580 72264338 -45598289 - L1ME1 LINE L1 -562 5673 4859 604 206 7 7 chr9 72264338 72264474 -45598153 + FLAM_C SINE Alu 4 139 -4 3695 186 45 121 chr9 72264474 72264921 -45597706 - L1ME1 LINE L1 -1376 4859 4533 1290 231 49 53 chr9 72264921 72265388 -45597239 + MLT1C LTR MaLR 1 465 -2 3695 186 45 121 chr9 72265388 72265687 -45596940 - L1ME1 LINE L1 -1702 4533 4213 4547 129 29 6 chr9 72265687 72266385 -45596242 - MER50 LTR ERV1 -20 714 1 960 271 29 11 chr9 72266385 72266666 -45595961 - L1ME1 LINE L1 -2001 4214 3929 * 1304 240 50 48 chr9 72266663 72267118 -45595509 - L1ME1 LINE L1 -5936 460 5 1122 237 137 57 chr9 72267114 72267413 -45595214 - L1MC5 LINE L1 -7 7954 7680 * 1886 117 26 71 chr9 72267413 72267722 -45594905 + AluSx SINE Alu 1 295 -17 1122 237 137 57 chr9 72267722 72268073 -45594554 - L1MC5 LINE L1 -281 7680 7252 2140 105 7 14 chr9 72268104 72268398 -45594229 - AluSq SINE Alu -20 293 2 1422 202 82 38 chr9 72268469 72268836 -45593791 - MLT1B LTR MaLR -2 388 6 2754 194 28 9 chr9 72268853 72269416 -45593211 - L1MC3 LINE L1 0 7785 7212 246 212 50 61 chr9 72269416 72269515 -45593112 - MLT1F1 LTR MaLR -408 159 62 444 219 8 8 chr9 72269515 72269634 -45592993 - L1MC3 LINE L1 -687 7098 6980 391 217 14 0 chr9 72269639 72269708 -45592919 - MER58 DNA MER1_type -144 71 2 2170 120 131 11 chr9 72269767 72270149 -45592478 - MSTA LTR MaLR 0 428 1 378 168 0 103 chr9 72270213 72270245 -45592382 - L1 LINE L1 -1510 4636 4602 1925 101 8 19 chr9 72270245 72270513 -45592114 + AluY SINE Alu 45 309 -2 378 168 0 103 chr9 72270513 72270587 -45592040 - L1 LINE L1 -1544 4602 4541 2136 146 108 10 chr9 72270590 72270980 -45591647 - MSTA LTR MaLR 0 428 1 9914 162 18 7 chr9 72270980 72272243 -45590384 - MSTA-int LTR MaLR 0 1651 364 2150 102 42 0 chr9 72272243 72272526 -45590101 + AluSx SINE Alu 1 295 -17 9914 162 18 7 chr9 72272526 72272895 -45589732 - MSTA-int LTR MaLR -1287 364 1 2366 153 46 10 chr9 72272895 72273308 -45589319 - MSTA LTR MaLR 0 428 1 594 281 41 60 chr9 72273308 72273695 -45588932 - HAL1b LINE L1 -893 1157 798 960 183 56 25 chr9 72274476 72274673 -45587954 + Charlie1b DNA MER1_type 41 243 -280 1231 164 0 0 chr9 72274675 72274864 -45587763 - AluSx SINE Alu -121 191 3 1416 203 16 0 chr9 72274873 72275178 -45587449 + L1MB3 LINE L1 4542 4851 -1295 2008 133 0 29 chr9 72275183 72275491 -45587136 - AluSx SINE Alu -13 299 1 703 196 15 0 chr9 72275499 72275632 -45586995 - FLAM_A SINE Alu 0 142 8 5050 169 41 7 chr9 72275640 72276928 -45585699 + L1MB3 LINE L1 4848 6182 -1 1394 280 103 2 chr9 72276920 72277470 -45585157 + L1ME3A LINE L1 5314 5951 -219 * 2146 131 54 49 chr9 72277556 72277765 -45584862 - MLT1B LTR MaLR 0 390 177 1902 162 7 0 chr9 72277765 72278073 -45584554 - AluJb SINE Alu -2 310 1 2146 131 54 49 chr9 72278073 72278251 -45584376 - MLT1B LTR MaLR -213 177 1 26 30 0 0 chr9 72278288 72278321 -45584306 + AT_rich Low_complexity Low_complexity 1 33 0 1015 158 30 141 chr9 72278527 72278895 -45583732 - MLT1A1 LTR MaLR 0 365 39 4800 205 69 72 chr9 72278895 72279236 -45583391 - MSTD-int LTR MaLR -1 1734 1393 1528 190 3 23 chr9 72279236 72279546 -45583081 - AluJo SINE Alu -8 304 1 4800 205 69 72 chr9 72279546 72280324 -45582303 - MSTD-int LTR MaLR -342 1393 614 2190 119 0 13 chr9 72280324 72280627 -45582000 - AluSx SINE Alu -13 299 1 2229 120 0 0 chr9 72280637 72280936 -45581691 - AluSx SINE Alu -13 299 1 4800 205 69 72 chr9 72280936 72281121 -45581506 - MSTD-int LTR MaLR -1130 605 402 44038 30 21 1 chr9 72281125 72287155 -45575472 + L1HS LINE L1 2 6155 0 2447 176 17 31 chr9 72287189 72287665 -45574962 - MSTD-int LTR MaLR -1263 472 4 1198 203 89 62 chr9 72287668 72288038 -45574589 - MSTD LTR MaLR 0 396 17 358 169 36 72 chr9 72288293 72288376 -45574251 + MER116 DNA Mariner 1 80 0 2095 120 33 0 chr9 72288407 72288706 -45573921 - AluSg SINE Alu -1 309 1 1842 130 3 62 chr9 72290083 72290390 -45572237 + AluJb SINE Alu 1 289 -23 26 0 0 0 chr9 72292566 72292592 -45570035 + AT_rich Low_complexity Low_complexity 1 26 0 355 250 47 54 chr9 72293239 72293387 -45569240 + MIR SINE MIR 26 172 -90 1968 147 0 0 chr9 72293437 72293754 -45568873 + AluJb SINE Alu 1 317 0 1634 249 127 13 chr9 72294017 72294483 -45568144 - LTR40a LTR ERVL 0 519 1 2360 77 0 17 chr9 72294706 72295004 -45567623 - AluY SINE Alu -18 293 1 2279 101 3 3 chr9 72295006 72295303 -45567324 - AluSc SINE Alu -12 297 1 204 226 0 0 chr9 72296946 72296999 -45565628 + A-rich Low_complexity Low_complexity 1 53 0 443 279 88 47 chr9 72297334 72297557 -45565070 + MIR SINE MIR 22 262 0 468 236 135 38 chr9 72298344 72298611 -45564016 - L1MC4a LINE L1 -1639 6169 5877 493 117 11 32 chr9 72298625 72298719 -45563908 - L1PB2 LINE L1 -2 6149 6058 256 266 21 21 chr9 72298803 72298897 -45563730 + L3 LINE CR1 411 504 -1073 342 281 72 7 chr9 72298972 72299125 -45563502 + MIR SINE MIR 99 261 -1 477 285 110 15 chr9 72299129 72299329 -45563298 + MIR SINE MIR 15 233 -29 200 263 105 0 chr9 72299301 72299358 -45563269 + L2 LINE L2 3251 3313 0 * 292 313 69 7 chr9 72299395 72299539 -45563088 + L3 LINE CR1 608 760 -817 377 239 168 36 chr9 72300354 72300521 -45562106 - MIR SINE MIR -46 216 28 24 0 0 0 chr9 72301743 72301767 -45560860 + AT_rich Low_complexity Low_complexity 1 24 0 542 284 142 35 chr9 72303819 72303908 -45558719 - L3 LINE CR1 -106 1471 1393 623 239 0 8 chr9 72303908 72304042 -45558585 - FLAM_A SINE Alu 0 133 1 542 284 142 35 chr9 72304042 72304269 -45558358 - L3 LINE CR1 -184 1393 1121 351 336 100 12 chr9 72304233 72304483 -45558144 + L2 LINE L2 1715 1986 -1328 * 913 172 0 54 chr9 72304493 72304679 -45557948 - AluJo SINE Alu -15 297 122 262 161 36 0 chr9 72304682 72304738 -45557889 - L1MC4 LINE L1 0 8042 7985 2103 126 7 0 chr9 72304748 72305058 -45557569 + AluSx SINE Alu 1 312 0 1309 211 147 16 chr9 72305065 72305439 -45557188 - L1MC4 LINE L1 -137 7905 7483 1226 256 45 17 chr9 72305438 72305793 -45556834 - L1MC4 LINE L1 -1219 6823 6459 * 5126 217 49 22 chr9 72306123 72307922 -45554705 + L1M4b LINE L1 506 2367 -4592 527 165 19 42 chr9 72307912 72308052 -45554575 + L1MB7 LINE L1 5873 6015 -159 * 4267 180 63 4 chr9 72308053 72308819 -45553808 + MER21B LTR ERV1 1 811 -52 710 172 89 0 chr9 72308868 72309025 -45553602 + L1MB7 LINE L1 6014 6184 0 * 3843 162 35 68 chr9 72309015 72309734 -45552893 + L1MB8 LINE L1 5313 6000 -178 1857 122 3 18 chr9 72309734 72310044 -45552583 + AluSq SINE Alu 1 306 0 3843 162 35 68 chr9 72310044 72310210 -45552417 + L1MB8 LINE L1 6000 6170 -8 811 275 147 18 chr9 72310274 72310608 -45552019 + L1MC4 LINE L1 14 390 -6150 238 200 109 0 chr9 72311401 72311456 -45551171 + L1MC4 LINE L1 812 872 -5668 662 210 0 0 chr9 72311897 72312035 -45550592 + L1MC4 LINE L1 1067 1204 -5339 6007 231 43 51 chr9 72312068 72313732 -45548895 + L1MC4 LINE L1 3161 4806 -1734 2095 106 10 3 chr9 72313732 72314033 -45548594 + AluSq SINE Alu 1 303 -10 6007 231 43 51 chr9 72314033 72314459 -45548168 + L1MC4 LINE L1 4806 5234 -1306 6015 223 121 54 chr9 72314460 72315915 -45546712 + L1MC4 LINE L1 5456 6812 -1624 2471 46 3 0 chr9 72315915 72316218 -45546409 + AluY SINE Alu 1 304 -7 2054 108 24 0 chr9 72316223 72316518 -45546109 + AluSx SINE Alu 1 302 -10 6015 223 121 54 chr9 72316518 72316581 -45546046 + L1MC4 LINE L1 6815 6872 -1564 936 167 139 32 chr9 72316581 72316797 -45545830 - MER8 DNA MER2_type 0 239 1 6015 223 121 54 chr9 72316797 72317782 -45544845 + L1MC4 LINE L1 6872 8127 -309 418 200 29 29 chr9 72317763 72317868 -45544759 + L1MC4 LINE L1 8332 8436 0 * 1012 169 94 129 chr9 72317871 72318134 -45544493 + L1MC5 LINE L1 7226 7466 -495 1812 135 0 0 chr9 72318134 72318401 -45544226 + AluSx SINE Alu 1 267 -45 1012 169 94 129 chr9 72318401 72318616 -45544011 + L1MC5 LINE L1 7466 7687 -274 1305 111 0 6 chr9 72318616 72318817 -45543810 - AluSg/x SINE Alu 0 312 113 692 299 28 7 chr9 72319378 72319597 -45543030 - MIR SINE MIR -6 256 31 626 119 0 0 chr9 72319832 72319916 -45542711 + FLAM_C SINE Alu 35 118 -25 1408 206 103 26 chr9 72320120 72320459 -45542168 - MLT1A1 LTR MaLR 0 365 1 316 294 14 35 chr9 72320892 72321035 -45541592 - L1MC5 LINE L1 -262 7699 7560 227 195 23 92 chr9 72321161 72321248 -45541379 - L1MC/D LINE L1 -2039 5769 5689 210 244 200 22 chr9 72321297 72321387 -45541240 + MIR3 SINE MIR 92 197 -11 241 289 180 18 chr9 72321713 72321924 -45540703 + MIR SINE MIR 6 251 -11 262 224 24 120 chr9 72322243 72322368 -45540259 - MIR SINE MIR -68 140 28 219 241 0 19 chr9 72324596 72324650 -45537977 - MIR SINE MIR -163 99 47 225 171 0 0 chr9 72324732 72324767 -45537860 - MIR SINE MIR -112 150 116 2064 205 70 33 chr9 72326329 72326929 -45535698 + MLT1E3 LTR MaLR 3 624 0 417 236 174 14 chr9 72326952 72327096 -45535531 + MLT1H LTR MaLR 382 548 -1 230 333 10 0 chr9 72328220 72328316 -45534311 - MIR SINE MIR -119 143 47 255 205 51 0 chr9 72329387 72329465 -45533162 + CT-rich Low_complexity Low_complexity 5 86 0 525 197 142 8 chr9 72329465 72329592 -45533035 + MLT1B LTR MaLR 1 144 -246 283 250 150 61 chr9 72330186 72330466 -45532161 - MLT1I LTR MaLR -31 378 74 197 222 63 16 chr9 72332290 72332353 -45530274 - MIR SINE MIR -71 137 72 181 274 20 0 chr9 72332559 72332610 -45530017 + MIR3 SINE MIR 114 165 -43 249 303 90 33 chr9 72333990 72334196 -45528431 - MIR SINE MIR -19 243 28 999 217 16 0 chr9 72334312 72334501 -45528126 - MER58A DNA MER1_type -3 221 30 1207 184 13 34 chr9 72334568 72334805 -45527822 - MLT1A2 LTR MaLR -18 356 125 2202 159 56 15 chr9 72334805 72335195 -45527432 - LOR1b LTR ERV1 0 461 56 677 127 9 9 chr9 72335258 72335368 -45527259 - MLT1A2 LTR MaLR -255 110 1 1009 260 92 51 chr9 72335369 72335857 -45526770 + MLT1H LTR MaLR 41 548 -1 2091 198 75 10 chr9 72336191 72336685 -45525942 + MER74A LTR ERVL 5 530 -28 344 297 27 0 chr9 72336756 72336867 -45525760 + MIR SINE MIR 44 157 -105 672 280 150 54 chr9 72336875 72337282 -45525345 - MLT1J1 LTR MaLR 0 446 1 1860 170 39 26 chr9 72337456 72337839 -45524788 - L1MB4 LINE L1 -344 5836 5449 2312 71 3 0 chr9 72337847 72338141 -45524486 - AluSc SINE Alu -14 295 1 7312 156 90 65 chr9 72338149 72338258 -45524369 - L1MC3 LINE L1 -164 7621 7516 2121 149 105 8 chr9 72338258 72338648 -45523979 - MSTA LTR MaLR 0 428 1 7312 156 90 65 chr9 72338648 72338983 -45523644 - L1MC3 LINE L1 -269 7516 7191 255 273 11 11 chr9 72338983 72339071 -45523556 - MLT1I LTR MaLR -456 111 24 7312 156 90 65 chr9 72339071 72339276 -45523351 - L1MC3 LINE L1 -594 7191 6993 237 65 0 0 chr9 72339276 72339307 -45523320 + (TG)n Simple_repeat Simple_repeat 2 32 0 7312 156 90 65 chr9 72339307 72339837 -45522790 - L1MC3 LINE L1 -792 6993 6478 2118 107 34 0 chr9 72339837 72340135 -45522492 - AluSc SINE Alu -1 308 1 7312 156 90 65 chr9 72340135 72340537 -45522090 - L1MC3 LINE L1 -1307 6478 5908 405 294 247 1 chr9 72340557 72340972 -45521655 + L2 LINE L2 2553 3065 -248 4539 149 9 7 chr9 72341027 72341767 -45520860 + Tigger2 DNA MER2_type 3 744 -1974 1551 132 62 0 chr9 72341833 72342075 -45520552 + Tigger2 DNA MER2_type 2461 2717 -1 392 143 0 0 chr9 72342118 72342188 -45520439 - L1MB8 LINE L1 -3 6175 6106 207 139 0 0 chr9 72342215 72342251 -45520376 + (TA)n Simple_repeat Simple_repeat 2 37 0 4916 199 16 9 chr9 72342348 72343675 -45518952 - L1MB4 LINE L1 -17 6163 4818 2383 76 0 0 chr9 72343675 72343979 -45518648 - AluY SINE Alu -7 304 1 4916 199 16 9 chr9 72343979 72344633 -45517994 - L1MB4 LINE L1 -1362 4818 4170 227 141 24 24 chr9 72344689 72344774 -45517853 + (TA)n Simple_repeat Simple_repeat 2 86 0 696 209 29 24 chr9 72344775 72344820 -45517807 - L1MB4 LINE L1 -1911 4235 4192 1560 176 11 4 chr9 72344820 72345099 -45517528 - AluJb SINE Alu -31 281 1 696 209 29 24 chr9 72345099 72345265 -45517362 - L1MB4 LINE L1 -1954 4192 4028 2369 134 22 6 chr9 72345265 72345623 -45517004 + LTR43 LTR ERV1 1 364 -238 3688 96 167 133 chr9 72345627 72346511 -45516116 - pTR5 LTR ERV1 0 2438 1525 2227 149 26 0 chr9 72346895 72347238 -45515389 + THE1B LTR MaLR 1 352 -12 1141 75 0 7 chr9 72347247 72347393 -45515234 + AluSq SINE Alu 74 218 -95 1425 105 0 63 chr9 72347393 72347631 -45514996 - pTR5 LTR ERV1 -963 1475 1253 212 244 22 0 chr9 72350152 72350197 -45512430 - L2 LINE L2 -1 3312 3267 316 218 20 194 chr9 72350459 72350707 -45511920 - MIR SINE MIR 0 262 58 412 300 128 13 chr9 72350972 72351199 -45511428 + MIR SINE MIR 5 257 -5 235 275 101 42 chr9 72351748 72351937 -45510690 - MIR SINE MIR -43 219 20 206 54 0 54 chr9 72351988 72352025 -45510602 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 316 335 131 19 chr9 72352475 72352681 -45509946 - L1ME4a LINE L1 -174 5947 5719 220 214 60 8 chr9 72352757 72352874 -45509753 + (TA)n Simple_repeat Simple_repeat 1 123 0 2259 93 6 0 chr9 72353036 72353347 -45509280 - AluSp SINE Alu 0 313 1 286 276 13 0 chr9 72353461 72353613 -45509014 + (CA)n Simple_repeat Simple_repeat 2 155 0 252 267 174 62 chr9 72353734 72353929 -45508698 - MIR SINE MIR -26 236 20 335 377 51 0 chr9 72353975 72354113 -45508514 - L1ME LINE L1 -357 5764 5620 22 35 0 0 chr9 72355010 72355039 -45507588 + AT_rich Low_complexity Low_complexity 1 29 0 322 282 126 10 chr9 72355566 72355669 -45506958 + MIR SINE MIR 20 134 -128 1100 165 46 27 chr9 72355760 72356020 -45506607 - L1MA6 LINE L1 0 6300 6036 43356 35 23 1 chr9 72356468 72362352 -45500275 + L1PA3 LINE L1 2 6014 -141 7539 50 2 3 chr9 72362452 72364049 -45498578 + L1PA5 LINE L1 4572 6169 0 812 191 0 0 chr9 72364049 72364175 -45498452 + AluSg/x SINE Alu 135 260 -50 216 0 0 0 chr9 72364175 72364199 -45498428 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 526 338 102 3 chr9 72364218 72364502 -45498125 - L2 LINE L2 -174 3139 2828 270 296 26 35 chr9 72364589 72364704 -45497923 + (CAGAGA)n Simple_repeat Simple_repeat 4 117 0 33302 83 13 2 chr9 72364804 72369272 -45493355 - L1P LINE L1 -1615 4531 18 896 134 0 0 chr9 72369273 72369400 -45493227 - AluSq/x SINE Alu -177 135 9 393 255 85 9 chr9 72369425 72369531 -45493096 + L2 LINE L2 3136 3249 -23 2251 73 0 18 chr9 72420077 72420400 -45442227 + AluY SINE Alu 1 318 0 2209 96 3 13 chr9 72420461 72420763 -45441864 + AluSx SINE Alu 1 299 -13 1145 115 11 11 chr9 72420763 72420937 -45441690 + AluSg/x SINE Alu 132 305 -5 238 266 78 0 chr9 72421212 72421276 -45441351 + L2 LINE L2 3240 3308 -5 1832 145 50 0 chr9 72421339 72421636 -45440991 + AluSx SINE Alu 1 312 0 219 69 0 0 chr9 72422753 72422782 -45439845 + (A)n Simple_repeat Simple_repeat 1 29 0 646 264 120 29 chr9 72423409 72423685 -45438942 - L2 LINE L2 -2 3311 3011 1600 154 17 40 chr9 72423694 72423837 -45438790 + AluJb SINE Alu 1 146 -166 2282 96 0 35 chr9 72423837 72424149 -45438478 + AluY SINE Alu 6 306 -5 1600 154 17 40 chr9 72424149 72424303 -45438324 + AluJb SINE Alu 146 291 -21 2168 104 20 0 chr9 72424417 72424715 -45437912 - AluSc SINE Alu -5 304 1 977 104 0 0 chr9 72424854 72424979 -45437648 - AluSq/x SINE Alu -187 125 1 660 164 0 0 chr9 72425469 72425573 -45437054 + L1MB3 LINE L1 5845 5948 -232 248 274 0 0 chr9 72425575 72425626 -45437001 + MER66B LTR ERV1 295 345 -141 1144 146 39 10 chr9 72425635 72425860 -45436767 + L1MB3 LINE L1 5936 6149 -34 1313 200 16 71 chr9 72425959 72426269 -45436358 + AluJb SINE Alu 2 294 -8 2317 103 7 0 chr9 72426318 72426628 -45435999 - AluSp SINE Alu -1 312 1 701 282 93 34 chr9 72426631 72426986 -45435641 - L1ME4a LINE L1 -275 5846 5471 224 227 23 0 chr9 72427674 72427718 -45434909 - L2 LINE L2 -6 3266 3222 390 42 0 0 chr9 72427860 72427908 -45434719 + (TG)n Simple_repeat Simple_repeat 1 48 0 874 111 8 0 chr9 72428625 72428751 -45433876 - AluSg/x SINE Alu -6 306 180 1494 70 5 5 chr9 72429543 72429729 -45432898 + AluSx SINE Alu 1 186 -126 307 77 0 0 chr9 72429829 72429868 -45432759 + Alu SINE Alu 253 291 -11 347 253 65 21 chr9 72429868 72430006 -45432621 + MIR3 SINE MIR 35 178 -30 748 96 10 0 chr9 72430459 72430563 -45432064 - L1MB5 LINE L1 0 6174 6070 2607 56 0 0 chr9 72430590 72430895 -45431732 - AluY SINE Alu -6 305 1 2086 107 38 3 chr9 72431128 72431417 -45431210 - AluSq SINE Alu -14 299 1 399 21 0 0 chr9 72431876 72431924 -45430703 + (CA)n Simple_repeat Simple_repeat 2 49 0 282 222 152 40 chr9 72432101 72432200 -45430427 + MIR SINE MIR 44 153 -55 1425 92 0 0 chr9 72432495 72432679 -45429948 + AluSg/x SINE Alu 120 303 -7 1389 141 24 0 chr9 72432679 72432892 -45429735 - MLT2B2 LTR ERVL -297 218 1 1611 233 30 24 chr9 72432972 72433330 -45429297 - L1MDa LINE L1 -2210 4747 4384 2191 110 7 0 chr9 72433330 72433622 -45429005 - AluSg SINE Alu -16 294 1 1611 233 30 24 chr9 72433622 72433722 -45428905 - L1MDa LINE L1 -2573 4384 4286 763 126 8 0 chr9 72433735 72433854 -45428773 + MSTB LTR MaLR 1 120 -306 1801 175 0 0 chr9 72433855 72434141 -45428486 + AluJo SINE Alu 1 286 -26 266 57 0 0 chr9 72434149 72434184 -45428443 - HERVK3 LTR ERVK -7207 36 2 2195 160 9 42 chr9 72434206 72434632 -45427995 - LTR3 LTR ERVK -16 416 5 273 57 0 0 chr9 72434636 72434671 -45427956 + (ATG)n Simple_repeat Simple_repeat 2 36 0 1755 162 61 3 chr9 72434675 72434972 -45427655 + MSTB LTR MaLR 112 425 -1 1117 248 58 2 chr9 72434975 72435371 -45427256 - L1MDa LINE L1 -2682 4275 3858 2418 93 0 0 chr9 72435378 72435689 -45426938 - AluY SINE Alu 0 311 1 2323 89 3 0 chr9 72436090 72436381 -45426246 - AluSp SINE Alu -17 296 5 857 148 0 0 chr9 72436399 72436527 -45426100 - FLAM_C SINE Alu -1 142 15 2318 87 10 3 chr9 72437253 72437551 -45425076 + AluSq SINE Alu 1 300 -13 1057 204 196 6 chr9 72437551 72437913 -45424714 - L1MDa LINE L1 -3144 3813 3383 1540 218 78 9 chr9 72437924 72438268 -45424359 - L1M4 LINE L1 -6380 479 112 1200 102 6 6 chr9 72438306 72438472 -45424155 + AluSx SINE Alu 1 166 -146 328 225 25 12 chr9 72438506 72438586 -45424041 - L1MDa LINE L1 -4227 2730 2650 783 117 10 0 chr9 72438586 72438721 -45423906 - AluSg/x SINE Alu 0 317 182 3168 233 116 14 chr9 72438727 72439565 -45423062 - L1MDa LINE L1 -5617 923 1 2729 212 65 108 chr9 72439549 72440060 -45422567 - L1MDa LINE L1 -4299 2658 2127 * 454 86 0 0 chr9 72440060 72440118 -45422509 - U6 snRNA snRNA -3 104 47 2176 86 0 0 chr9 72440118 72440386 -45422241 - AluSx SINE Alu -44 268 1 2729 212 65 108 chr9 72440386 72440720 -45421907 - L1MDa LINE L1 -4829 2128 1781 2356 108 0 0 chr9 72440720 72441026 -45421601 - AluSx SINE Alu -6 306 1 2729 212 65 108 chr9 72441026 72441403 -45421224 - L1MDa LINE L1 -5176 1781 1432 6897 98 2 0 chr9 72441768 72442534 -45420093 + L1PA13 LINE L1 4322 5085 -1078 2318 98 0 22 chr9 72442534 72442849 -45419778 - AluSx SINE Alu -2 310 3 6897 98 2 0 chr9 72442849 72443935 -45418692 + L1PA13 LINE L1 5085 6159 -4 295 185 0 15 chr9 72443935 72444000 -45418627 + L1M4 LINE L1 2941 3004 -3142 36 23 0 0 chr9 72444085 72444128 -45418499 + AT_rich Low_complexity Low_complexity 1 43 0 272 229 0 0 chr9 72444134 72444195 -45418432 - AluJb SINE Alu -168 134 74 7924 31 0 0 chr9 72444195 72445209 -45417418 - L1PA4 LINE L1 -1 6154 5136 2348 108 0 0 chr9 72445223 72445529 -45417098 - AluSx SINE Alu -6 306 1 446 199 163 10 chr9 72445532 72445728 -45416899 + L1M4 LINE L1 3000 3225 -2921 470 252 0 0 chr9 72445739 72445854 -45416773 - MLT2E LTR ERVL -8 620 506 4933 96 0 6 chr9 72445908 72446585 -45416042 + L1PB1 LINE L1 5435 6107 -44 2455 83 0 0 chr9 72446585 72446886 -45415741 + AluY SINE Alu 1 301 -10 971 279 169 3 chr9 72446915 72447277 -45415350 - MLT2E LTR ERVL -206 422 1 1118 285 81 20 chr9 72447285 72447779 -45414848 + L1M4 LINE L1 3249 3772 -2374 904 273 52 11 chr9 72447780 72448051 -45414576 - ERVL LTR ERVL -742 5022 4741 4696 184 41 79 chr9 72448058 72448246 -45414381 - L1MC/D LINE L1 -743 5386 5192 2258 111 3 13 chr9 72448246 72448562 -45414065 + AluSq SINE Alu 1 313 0 4696 184 41 79 chr9 72448562 72448888 -45413739 - L1MC/D LINE L1 -937 5192 4855 2039 128 7 23 chr9 72448888 72449194 -45413433 - AluSx SINE Alu -9 303 3 4696 184 41 79 chr9 72449194 72450058 -45412569 - L1MC/D LINE L1 -1274 4855 4130 1013 88 22 0 chr9 72450116 72450252 -45412375 + AluSx SINE Alu 1 139 -174 371 244 0 11 chr9 72450261 72450351 -45412276 + L1M4 LINE L1 3502 3590 -2556 1095 120 0 0 chr9 72450355 72450505 -45412122 + AluSx SINE Alu 147 296 -16 355 39 19 0 chr9 72450635 72450687 -45411940 - LTR12 LTR ERV1 -661 53 1 593 293 97 46 chr9 72450812 72451163 -45411464 - ERVL LTR ERVL -1481 4283 3915 2087 110 0 3 chr9 72451264 72451546 -45411081 - AluSq SINE Alu -32 281 1 266 194 30 15 chr9 72451944 72452011 -45410616 - L1M2 LINE L1 -4340 2509 2442 255 280 58 108 chr9 72452061 72452235 -45410392 - L1MEd LINE L1 -4900 1231 1050 542 231 0 0 chr9 72452235 72452339 -45410288 - U13 snRNA snRNA 0 104 1 255 280 58 108 chr9 72452339 72452418 -45410209 - L1MEd LINE L1 -5081 1050 969 2244 95 11 0 chr9 72452418 72452701 -45409926 - AluSg SINE Alu -24 286 1 255 280 58 108 chr9 72452701 72453352 -45409275 - L1MEd LINE L1 -5162 969 487 7067 194 64 43 chr9 72454119 72454966 -45407661 + L1M3 LINE L1 30 858 -5526 1947 125 0 14 chr9 72454966 72455247 -45407380 - AluSg SINE Alu 0 310 34 7067 194 64 43 chr9 72455247 72456044 -45406583 + L1M3 LINE L1 858 1714 -4670 2299 110 0 0 chr9 72456044 72456345 -45406282 + AluSx SINE Alu 1 301 -11 7067 194 64 43 chr9 72456345 72456429 -45406198 + L1M3 LINE L1 1714 1795 -4589 1035 168 0 6 chr9 72456429 72456596 -45406031 + AluSg/x SINE Alu 136 301 -11 1466 167 252 28 chr9 72456604 72457064 -45405563 + L1M3 LINE L1 1804 2456 -3928 * 5146 251 60 26 chr9 72457039 72457861 -45404766 + L1M3 LINE L1 3178 3971 -2411 2076 125 13 10 chr9 72457861 72458172 -45404455 + AluSx SINE Alu 1 312 0 5146 251 60 26 chr9 72458172 72459413 -45403214 + L1M3 LINE L1 3971 5378 -1004 2303 107 0 3 chr9 72459413 72459713 -45402914 + AluSx SINE Alu 1 299 -13 5146 251 60 26 chr9 72459713 72459856 -45402771 + L1M3 LINE L1 5378 5515 -867 1090 101 133 258 chr9 72459880 72460425 -45402202 - LTR12 LTR ERV1 -232 1983 55 247 175 0 0 chr9 72460425 72460465 -45402162 - LTR30 LTR ERV1 -670 52 13 1749 144 7 0 chr9 72460477 72460748 -45401879 + AluJo SINE Alu 31 303 -9 2123 174 44 22 chr9 72460756 72461169 -45401458 + L1M3 LINE L1 5527 5948 -468 2628 176 41 4 chr9 72461269 72461780 -45400847 + L1MB4 LINE L1 5651 6180 0 296 335 92 17 chr9 72461910 72462203 -45400424 - L1MC/D LINE L1 -2090 5718 5404 322 226 70 35 chr9 72462262 72462377 -45400250 - LTR16B LTR ERVL 0 464 346 1888 150 0 38 chr9 72462429 72462743 -45399884 - MER44D DNA MER2_type -36 573 2 1702 201 9 0 chr9 72462743 72463092 -45399535 + L1ME1 LINE L1 5239 5592 -572 42665 61 4 3 chr9 72463093 72469235 -45393392 - L1PA5 LINE L1 0 6154 5 2392 201 66 27 chr9 72469219 72469337 -45393290 + L1ME1 LINE L1 5559 5671 -663 * 2131 111 0 20 chr9 72469337 72469635 -45392992 + AluSq SINE Alu 1 292 -21 2392 201 66 27 chr9 72469635 72469766 -45392861 + L1ME1 LINE L1 5671 5795 -539 5370 159 20 6 chr9 72469766 72470619 -45392008 - MER6 DNA MER2_type 0 865 1 2392 201 66 27 chr9 72470619 72470966 -45391661 + L1ME1 LINE L1 5795 6333 -1 362 164 16 180 chr9 72470975 72471097 -45391530 + L1MD2 LINE L1 5584 5685 -2123 1551 146 13 4 chr9 72471098 72471337 -45391290 + AluJb SINE Alu 1 241 -71 2032 141 52 23 chr9 72471348 72471732 -45390895 - MER61B LTR ERV1 -30 395 1 226 140 200 0 chr9 72471733 72471783 -45390844 + AluSc SINE Alu 237 296 -3 1167 176 56 66 chr9 72472335 72472529 -45390098 + MER33 DNA MER1_type 6 197 -2388 1198 153 37 70 chr9 72472529 72472770 -45389857 - MER46A DNA MER2_type -2 234 2 1167 176 56 66 chr9 72472770 72472894 -45389733 + MER33 DNA MER1_type 197 321 -3 198 261 75 9 chr9 72473156 72473281 -45389346 - MIR SINE MIR -33 229 74 339 270 100 0 chr9 72473562 72473662 -45388965 - MIR SINE MIR -43 219 110 271 258 16 0 chr9 72474557 72474619 -45388008 + MIR SINE MIR 45 107 -101 * 487 256 110 18 chr9 72474615 72474779 -45387848 - MIR SINE MIR -25 237 59 217 291 8 87 chr9 72474977 72475104 -45387523 - MIR SINE MIR -30 232 116 2301 194 57 2 chr9 72475254 72475714 -45386913 + L1MD2 LINE L1 5865 6349 -10 2410 221 20 37 chr9 72475736 72475786 -45386841 + L1ME1 LINE L1 5045 5094 -1072 2229 102 0 13 chr9 72475786 72476101 -45386526 - AluY SINE Alu 0 311 1 2410 221 20 37 chr9 72476101 72476870 -45385757 + L1ME1 LINE L1 5094 5857 -309 2143 127 6 34 chr9 72477041 72477363 -45385264 + AluSq SINE Alu 1 313 0 339 97 14 28 chr9 72477363 72477435 -45385192 + (GGAAA)n Simple_repeat Simple_repeat 1 71 0 552 211 197 14 chr9 72477435 72477625 -45385002 + L1MA10 LINE L1 5960 6334 0 1334 263 40 45 chr9 72477664 72478246 -45384381 + L1MEc LINE L1 1212 1790 -4606 697 316 118 11 chr9 72478274 72478648 -45383979 - LTR16B LTR ERVL 0 464 51 672 234 14 48 chr9 72478722 72478886 -45383741 + L1MEc LINE L1 1863 2020 -4376 2396 80 0 6 chr9 72478886 72479199 -45383428 + AluY SINE Alu 1 311 0 672 234 14 48 chr9 72479199 72479243 -45383384 + L1MEc LINE L1 2020 2064 -4332 2278 191 83 17 chr9 72479243 72479384 -45383243 - Charlie1a DNA MER1_type -1306 1455 1325 1839 156 3 10 chr9 72479384 72479692 -45382935 + AluJo SINE Alu 1 306 -6 2278 191 83 17 chr9 72479692 72480131 -45382496 - Charlie1a DNA MER1_type -1436 1325 837 1959 100 30 30 chr9 72480216 72480515 -45382112 - AluSc SINE Alu -10 299 1 754 142 74 0 chr9 72480544 72480692 -45381935 - L1MA7 LINE L1 -3 6288 6130 1722 148 7 11 chr9 72480696 72480967 -45381660 - AluSx SINE Alu -12 300 31 683 158 26 9 chr9 72480971 72481085 -45381542 - pTR5 LTR ERV1 -2271 167 52 265 188 0 47 chr9 72481085 72481149 -45381478 - LTR30 LTR ERV1 -98 624 564 696 117 13 213 chr9 72481157 72481396 -45381231 - LTR12 LTR ERV1 -424 290 100 276 198 59 79 chr9 72481404 72481419 -45381208 - AluS SINE Alu -225 78 64 271 211 0 0 chr9 72481419 72481471 -45381156 - LTR30 LTR ERV1 -670 52 1 276 198 59 79 chr9 72481471 72481505 -45381122 - AluS SINE Alu -239 64 1 1490 132 79 85 chr9 72481515 72481855 -45380772 - L1MA7 LINE L1 -172 6119 5782 21 0 0 0 chr9 72481855 72481876 -45380751 + AT_rich Low_complexity Low_complexity 1 21 0 3161 142 24 15 chr9 72481915 72482465 -45380162 - L1MA7 LINE L1 -500 5791 5238 593 143 0 0 chr9 72482465 72482556 -45380071 - Charlie1a DNA MER1_type -602 853 763 1151 116 0 0 chr9 72482556 72482711 -45379916 - AluSg/x SINE Alu 0 310 156 1597 171 211 36 chr9 72482711 72482983 -45379644 - Charlie1a DNA MER1_type -1991 770 547 1420 191 57 18 chr9 72482983 72483265 -45379362 + AluJo SINE Alu 1 293 -19 1597 171 211 36 chr9 72483265 72483437 -45379190 - Charlie1a DNA MER1_type -2214 547 248 1814 136 77 0 chr9 72483437 72483710 -45378917 - AluSq SINE Alu -19 294 1 2093 145 0 6 chr9 72483711 72484022 -45378605 - AluSx SINE Alu -3 309 1 425 159 0 0 chr9 72484030 72484099 -45378528 - Alu SINE Alu -13 298 230 1082 122 7 0 chr9 72484099 72484247 -45378380 - AluSq/x SINE Alu -161 151 3 1187 222 13 8 chr9 72484273 72484512 -45378115 - Charlie1a DNA MER1_type -1215 240 1 2698 137 9 52 chr9 72485027 72485169 -45377458 - MSTC LTR MaLR -2 426 279 2390 178 34 2 chr9 72485169 72485580 -45377047 + MSTB LTR MaLR 1 424 -2 2698 137 9 52 chr9 72485580 72485882 -45376745 - MSTC LTR MaLR -149 279 1 255 306 0 12 chr9 72486032 72486117 -45376510 + L1M4 LINE L1 879 962 -5580 2347 88 14 0 chr9 72486174 72486470 -45376157 - AluSc SINE Alu -9 300 1 259 258 186 16 chr9 72486473 72486597 -45376030 + L1M4 LINE L1 1091 1235 -5307 414 208 40 20 chr9 72486600 72486701 -45375926 + L1M4 LINE L1 4289 4391 -2253 15245 209 25 31 chr9 72486721 72490574 -45372053 + L1PB3 LINE L1 3 3877 -2993 1989 135 13 0 chr9 72490574 72490878 -45371749 - AluSq SINE Alu -5 308 1 15245 209 25 31 chr9 72490878 72491477 -45371150 + L1PB3 LINE L1 3877 4478 -2392 2111 135 0 0 chr9 72491477 72491780 -45370847 + AluSx SINE Alu 1 303 -9 15245 209 25 31 chr9 72491780 72493148 -45369479 + L1PB3 LINE L1 4478 5852 -1018 2008 112 52 0 chr9 72493148 72493434 -45369193 + AluSq SINE Alu 1 301 -12 15245 209 25 31 chr9 72493434 72493923 -45368704 + L1PB3 LINE L1 5852 6342 -528 2939 109 25 32 chr9 72493923 72494123 -45368504 + MSTA LTR MaLR 1 201 -227 2222 95 0 26 chr9 72494123 72494429 -45368198 + AluSq SINE Alu 1 298 -15 2939 109 25 32 chr9 72494429 72494659 -45367968 + MSTA LTR MaLR 201 428 0 15245 209 25 31 chr9 72494659 72496070 -45366557 + L1PB3 LINE L1 6342 6868 -2 846 193 66 29 chr9 72496133 72496376 -45366251 + L1M4 LINE L1 4381 4632 -2012 406 250 30 49 chr9 72496395 72496559 -45366068 + L1MB7 LINE L1 1 161 -6381 2367 89 0 3 chr9 72496688 72496992 -45365635 - AluY SINE Alu -8 303 1 2329 245 36 70 chr9 72497079 72497702 -45364925 + L1MB7 LINE L1 445 1088 -5454 243 0 0 0 chr9 72497702 72497729 -45364898 + (TTTTA)n Simple_repeat Simple_repeat 3 29 0 1970 121 3 14 chr9 72497738 72498028 -45364599 - AluSx SINE Alu -25 287 1 2329 245 36 70 chr9 72498028 72498307 -45364320 + L1MB7 LINE L1 1096 1326 -5216 1025 185 72 27 chr9 72498307 72498562 -45364065 + MSTD LTR MaLR 91 396 0 2885 208 82 30 chr9 72498567 72498880 -45363747 + L1MB7 LINE L1 4595 4890 -1754 985 187 23 0 chr9 72498880 72499051 -45363576 + FAM SINE Alu 1 175 0 2885 208 82 30 chr9 72499051 72499532 -45363095 + L1MB7 LINE L1 4890 5430 -1214 980 175 39 74 chr9 72499537 72499737 -45362890 + L1MB7 LINE L1 6070 6275 -389 2066 118 6 34 chr9 72499737 72500058 -45362569 + AluSx SINE Alu 1 312 0 2438 80 0 3 chr9 72500058 72500369 -45362258 + AluY SINE Alu 1 310 -1 980 175 39 74 chr9 72500369 72500424 -45362203 + L1MB7 LINE L1 6273 6317 -347 527 216 0 0 chr9 72500427 72500515 -45362112 + AluJb SINE Alu 200 287 -25 362 218 46 0 chr9 72500516 72500603 -45362024 + L1MB7 LINE L1 6331 6421 -261 2392 73 0 7 chr9 72500672 72500961 -45361666 - AluY SINE Alu -24 287 1 290 67 22 0 chr9 72501613 72501658 -45360969 + (CA)n Simple_repeat Simple_repeat 2 47 0 271 190 138 0 chr9 72502528 72502586 -45360041 - MLT1L LTR MaLR -222 393 328 1462 201 7 0 chr9 72502603 72502876 -45359751 + AluJb SINE Alu 4 278 -34 331 143 186 14 chr9 72503005 72503075 -45359552 - MLT1L LTR MaLR -533 82 1 546 221 50 14 chr9 72503645 72503785 -45358842 + L1MC1 LINE L1 6189 6333 0 1565 133 91 4 chr9 72504889 72505152 -45357475 - AluSx SINE Alu -25 287 2 519 129 11 19 chr9 72505510 72505764 -45356863 + AluSx SINE Alu 11 310 0 1245 157 140 0 chr9 72505940 72506175 -45356452 + AluJb SINE Alu 31 298 -14 2073 90 17 7 chr9 72507449 72507738 -45354889 - AluSx SINE Alu -20 292 1 869 154 0 0 chr9 72507738 72507874 -45354753 - AluSq/x SINE Alu -176 136 1 29 0 0 0 chr9 72508209 72508238 -45354389 + AT_rich Low_complexity Low_complexity 1 29 0 573 223 81 0 chr9 72510871 72511019 -45351608 + L1M4 LINE L1 4789 4948 -1198 657 128 317 53 chr9 72511057 72511284 -45351343 + L1M4 LINE L1 5291 5577 -607 2685 221 79 42 chr9 72511323 72512043 -45350584 + MER21B LTR ERV1 12 758 -105 401 106 2 0 chr9 72512070 72512132 -45350495 + L1M4 LINE L1 5601 5663 -511 804 168 0 72 chr9 72512136 72512303 -45350324 + FRAM SINE Alu 1 155 -21 192 244 30 163 chr9 72512352 72512487 -45350140 + MIR SINE MIR 32 148 -60 2003 109 3 26 chr9 72512746 72513048 -45349579 - AluSx SINE Alu -17 295 1 268 236 0 11 chr9 72513062 72513151 -45349476 + A-rich Low_complexity Low_complexity 3 90 0 270 204 56 0 chr9 72513465 72513519 -45349108 + MER112 DNA MER1_type 200 256 -4 2029 118 0 0 chr9 72513986 72514274 -45348353 + AluSg SINE Alu 1 288 -22 2071 111 7 0 chr9 72514295 72514583 -45348044 + AluSq SINE Alu 1 290 -23 26 0 0 0 chr9 72514590 72514616 -45348011 + AT_rich Low_complexity Low_complexity 1 26 0 215 256 194 8 chr9 72514731 72514860 -45347767 + MIR SINE MIR 98 250 -12 536 158 178 7 chr9 72515074 72515226 -45347401 - L1MA8 LINE L1 -1 6290 6113 1060 192 161 24 chr9 72516213 72516505 -45346122 + MER2 DNA MER2_type 14 345 0 853 121 0 57 chr9 72516677 72516818 -45345809 + FLAM_C SINE Alu 1 133 0 26 30 0 0 chr9 72516923 72516956 -45345671 + AT_rich Low_complexity Low_complexity 1 33 0 614 218 42 0 chr9 72516969 72517111 -45345516 + MER33 DNA MER1_type 1 148 -176 334 212 71 35 chr9 72517604 72517717 -45344910 + MER112 DNA MER1_type 144 260 0 202 353 0 0 chr9 72519006 72519091 -45343536 + C-rich Low_complexity Low_complexity 1 85 0 24 32 0 0 chr9 72519408 72519439 -45343188 + GC_rich Low_complexity Low_complexity 1 31 0 28 0 0 0 chr9 72519690 72519718 -45342909 + GC_rich Low_complexity Low_complexity 1 28 0 244 164 7 0 chr9 72520185 72520249 -45342378 + MIR SINE MIR 88 152 -56 682 137 8 23 chr9 72520299 72520430 -45342197 - AluJb SINE Alu -8 304 176 182 290 101 0 chr9 72520633 72520702 -45341925 + MIR SINE MIR 31 106 -102 214 180 164 49 chr9 72521050 72521111 -45341516 + L2 LINE L2 3156 3223 -49 992 223 54 25 chr9 72521587 72521829 -45340798 + MIR SINE MIR 13 261 -1 375 213 95 65 chr9 72521859 72522028 -45340599 + L1P5 LINE L1 5284 5457 -694 450 264 109 34 chr9 72522069 72522308 -45340319 + L1ME LINE L1 5543 5799 -322 2093 113 0 10 chr9 72522320 72522621 -45340006 + AluSx SINE Alu 1 298 -14 244 337 54 0 chr9 72522722 72522814 -45339813 + L2 LINE L2 3199 3295 -18 870 93 0 0 chr9 72522824 72522942 -45339685 + AluSg/x SINE Alu 177 294 -16 2294 87 0 0 chr9 72523001 72523299 -45339328 - AluSg1 SINE Alu -11 298 1 390 238 204 7 chr9 72523466 72523613 -45339014 + MLT1J LTR MaLR 3 178 -333 454 286 171 30 chr9 72524237 72524541 -45338086 + L2 LINE L2 2958 3304 -9 1536 156 0 67 chr9 72524565 72524880 -45337747 + AluSx SINE Alu 1 294 -18 2484 181 62 16 chr9 72525450 72525946 -45336681 + MLT2B1 LTR ERVL 1 519 -1 874 255 92 46 chr9 72526210 72526536 -45336091 + MER102b DNA MER1_type 1 341 0 236 236 64 109 chr9 72526772 72526830 -45335797 + MLT1K LTR MaLR 377 436 -152 2211 87 6 13 chr9 72526830 72527141 -45335486 + AluSg SINE Alu 1 309 -1 236 236 64 109 chr9 72527141 72527302 -45335325 + MLT1K LTR MaLR 436 586 -2 267 350 72 36 chr9 72527303 72527526 -45335101 + MIR SINE MIR 13 243 -19 1634 152 17 30 chr9 72527626 72527922 -45334705 - AluJo SINE Alu -20 292 1 398 341 62 10 chr9 72528004 72528212 -45334415 + MIR SINE MIR 39 257 -5 460 264 115 79 chr9 72529428 72529872 -45332755 + MLT1J LTR MaLR 3 462 -49 1832 164 3 0 chr9 72530060 72530364 -45332263 + AluJb SINE Alu 1 305 -7 2304 82 7 0 chr9 72530527 72530831 -45331796 + AluY SINE Alu 1 306 -5 24 32 0 0 chr9 72530831 72530862 -45331765 + AT_rich Low_complexity Low_complexity 1 31 0 2740 240 25 9 chr9 72530894 72531586 -45331041 - L1MEc LINE L1 -5409 987 285 260 268 129 75 chr9 72532229 72532288 -45330339 - MIR SINE MIR -58 204 150 1982 134 0 3 chr9 72532288 72532614 -45330013 - AluSx SINE Alu 0 325 1 260 268 129 75 chr9 72532614 72532748 -45329879 - MIR SINE MIR -112 150 3 * 344 301 0 0 chr9 72532748 72532818 -45329809 + MIR SINE MIR 160 229 -33 2391 45 0 3 chr9 72533414 72533706 -45328921 + AluY SINE Alu 1 291 -20 2394 168 103 7 chr9 72535214 72535679 -45326948 + MER74A LTR ERVL 8 517 -41 327 261 85 39 chr9 72536512 72536665 -45325962 + HAL1 LINE L1 2310 2469 -38 229 254 32 0 chr9 72538139 72538202 -45324425 + MER58 DNA MER1_type 27 91 -250 2230 88 3 0 chr9 72538209 72538503 -45324124 - AluSp SINE Alu -18 295 1 371 183 0 28 chr9 72538561 72538632 -45323995 + MER58 DNA MER1_type 2342 2410 -10 305 241 184 43 chr9 72538959 72539100 -45323527 - MIR SINE MIR -18 244 84 2159 98 0 0 chr9 72539207 72539503 -45323124 + AluSx SINE Alu 1 296 -16 936 119 0 0 chr9 72539800 72539934 -45322693 + AluJo SINE Alu 1 134 -178 219 315 0 0 chr9 72539945 72539999 -45322628 - L2 LINE L2 -82 3190 3137 374 300 77 45 chr9 72540083 72540330 -45322297 + MLT1L LTR MaLR 170 424 -191 1946 126 20 0 chr9 72540581 72540874 -45321753 - AluSx SINE Alu -13 299 1 563 242 178 72 chr9 72541024 72541355 -45321272 + MLT1L LTR MaLR 216 581 -34 277 269 80 69 chr9 72541379 72541554 -45321073 - L2 LINE L2 -225 3047 2871 292 252 78 26 chr9 72541959 72542074 -45320553 + MLT1I LTR MaLR 274 394 -15 611 174 140 98 chr9 72542077 72542135 -45320492 - MER5C DNA MER1_type -4 320 266 2076 142 0 0 chr9 72542135 72542446 -45320181 - AluSq SINE Alu -2 311 1 611 174 140 98 chr9 72542446 72542622 -45320005 - MER5C DNA MER1_type -58 266 76 262 357 20 0 chr9 72542883 72542981 -45319646 - MIR SINE MIR -12 250 151 1937 128 0 16 chr9 72543020 72543324 -45319303 + AluSg SINE Alu 1 299 -11 1206 132 5 24 chr9 72543324 72543537 -45319090 - L1MB3 LINE L1 -9 6174 5966 216 0 0 0 chr9 72546204 72546228 -45316399 + (A)n Simple_repeat Simple_repeat 1 24 0 21 0 0 0 chr9 72546377 72546398 -45316229 + AT_rich Low_complexity Low_complexity 1 21 0 486 162 30 10 chr9 72546665 72546764 -45315863 + MER50 LTR ERV1 1 101 -633 2033 122 0 7 chr9 72546765 72547060 -45315567 - AluSx SINE Alu -19 293 1 1531 186 135 77 chr9 72547078 72547448 -45315179 + LTR36 LTR ERV1 30 444 -167 2135 100 0 20 chr9 72547448 72547749 -45314878 - AluSg SINE Alu -15 295 1 1531 186 135 77 chr9 72547749 72547926 -45314701 + LTR36 LTR ERV1 444 609 -2 3625 186 45 121 chr9 72547929 72548318 -45314309 - L1ME1 LINE L1 -145 6090 5673 4178 86 15 2 chr9 72548318 72548865 -45313762 - MER41A LTR ERV1 0 554 1 3625 186 45 121 chr9 72548865 72549623 -45313004 - L1ME1 LINE L1 -562 5673 4859 610 206 7 7 chr9 72549623 72549759 -45312868 + FLAM_C SINE Alu 4 139 -4 3625 186 45 121 chr9 72549759 72550206 -45312421 - L1ME1 LINE L1 -1376 4859 4533 1287 231 49 53 chr9 72550206 72550673 -45311954 + MLT1C LTR MaLR 1 465 -2 3625 186 45 121 chr9 72550673 72550972 -45311655 - L1ME1 LINE L1 -1702 4533 4213 4565 129 29 6 chr9 72550972 72551670 -45310957 - MER50 LTR ERV1 -20 714 1 960 271 29 11 chr9 72551670 72551951 -45310676 - L1ME1 LINE L1 -2001 4214 3929 * 1319 240 50 48 chr9 72551948 72552403 -45310224 - L1ME1 LINE L1 -5936 460 5 1098 228 145 60 chr9 72552399 72552698 -45309929 - L1MC5 LINE L1 -7 7954 7682 * 1763 119 26 70 chr9 72552698 72553010 -45309617 + AluSx SINE Alu 1 298 -14 1098 228 145 60 chr9 72553010 72553358 -45309269 - L1MC5 LINE L1 -279 7682 7252 2014 105 7 14 chr9 72553389 72553683 -45308944 - AluSq SINE Alu -20 293 2 1434 202 82 38 chr9 72553754 72554121 -45308506 - MLT1B LTR MaLR -2 388 6 2746 194 28 9 chr9 72554138 72554701 -45307926 - L1MC3 LINE L1 0 7785 7212 250 212 50 61 chr9 72554701 72554800 -45307827 - MLT1F1 LTR MaLR -408 159 62 435 219 8 8 chr9 72554800 72554919 -45307708 - L1MC3 LINE L1 -687 7098 6980 392 217 14 0 chr9 72554924 72554993 -45307634 - MER58 DNA MER1_type -144 71 2 2179 120 131 11 chr9 72555052 72555434 -45307193 - MSTA LTR MaLR 0 428 1 367 168 0 103 chr9 72555498 72555530 -45307097 - L1 LINE L1 -1510 4636 4602 1815 101 8 19 chr9 72555530 72555798 -45306829 + AluY SINE Alu 45 309 -2 367 168 0 103 chr9 72555798 72555872 -45306755 - L1 LINE L1 -1544 4602 4541 2134 146 108 10 chr9 72555875 72556265 -45306362 - MSTA LTR MaLR 0 428 1 9956 162 18 7 chr9 72556265 72557528 -45305099 - MSTA-int LTR MaLR 0 1651 364 2024 102 42 0 chr9 72557528 72557811 -45304816 + AluSx SINE Alu 1 295 -17 9956 162 18 7 chr9 72557811 72558180 -45304447 - MSTA-int LTR MaLR -1287 364 1 2512 153 46 10 chr9 72558180 72558593 -45304034 - MSTA LTR MaLR 0 428 1 623 290 34 30 chr9 72558593 72558980 -45303647 - HAL1b LINE L1 -893 1153 798 971 183 56 25 chr9 72559761 72559958 -45302669 + Charlie1b DNA MER1_type 41 243 -280 1213 164 0 0 chr9 72559960 72560149 -45302478 - AluSx SINE Alu -121 191 3 5103 171 38 22 chr9 72560158 72560468 -45302159 + L1MB3 LINE L1 4542 4845 -1338 1995 133 0 29 chr9 72560468 72560776 -45301851 - AluSx SINE Alu -13 299 1 5103 171 38 22 chr9 72560776 72560794 -45301833 + L1MB3 LINE L1 4845 4861 -1322 717 217 16 0 chr9 72560794 72560923 -45301704 - FLAM_A SINE Alu -1 132 2 5103 171 38 22 chr9 72560923 72562213 -45300414 + L1MB3 LINE L1 4861 6182 -1 1420 274 107 2 chr9 72562207 72562755 -45299872 + L1ME3A LINE L1 5317 5951 -211 * 2280 131 54 49 chr9 72562841 72563050 -45299577 - MLT1B LTR MaLR 0 390 177 1859 167 7 0 chr9 72563050 72563356 -45299271 - AluJb SINE Alu -4 308 1 2280 131 54 49 chr9 72563356 72563534 -45299093 - MLT1B LTR MaLR -213 177 1 26 30 0 0 chr9 72563571 72563604 -45299023 + AT_rich Low_complexity Low_complexity 1 33 0 1017 158 30 141 chr9 72563810 72564178 -45298449 - MLT1A1 LTR MaLR 0 365 39 4771 205 69 72 chr9 72564178 72564519 -45298108 - MSTD-int LTR MaLR -1 1734 1393 1521 190 3 23 chr9 72564519 72564829 -45297798 - AluJo SINE Alu -8 304 1 4771 205 69 72 chr9 72564829 72565607 -45297020 - MSTD-int LTR MaLR -342 1393 614 2172 119 0 13 chr9 72565607 72565910 -45296717 - AluSx SINE Alu -13 299 1 2213 120 0 0 chr9 72565920 72566219 -45296408 - AluSx SINE Alu -13 299 1 4771 205 69 72 chr9 72566219 72566404 -45296223 - MSTD-int LTR MaLR -1130 605 402 44012 30 21 1 chr9 72566408 72572439 -45290188 + L1HS LINE L1 2 6155 0 2448 176 17 31 chr9 72572473 72572949 -45289678 - MSTD-int LTR MaLR -1263 472 4 1202 203 89 62 chr9 72572952 72573322 -45289305 - MSTD LTR MaLR 0 396 17 368 193 0 36 chr9 72573577 72573660 -45288967 + MER116 DNA Mariner 1 80 0 2078 120 33 0 chr9 72573691 72573990 -45288637 - AluSg SINE Alu -1 309 1 1821 130 3 62 chr9 72575367 72575674 -45286953 + AluJb SINE Alu 1 289 -23 199 268 37 24 chr9 72575780 72575862 -45286765 - L3 LINE CR1 -199 1378 1296 26 0 0 0 chr9 72577850 72577876 -45284751 + AT_rich Low_complexity Low_complexity 1 26 0 396 250 47 54 chr9 72578523 72578671 -45283956 + MIR SINE MIR 26 172 -90 1940 147 0 0 chr9 72578721 72579038 -45283589 + AluJb SINE Alu 1 317 0 1625 249 127 13 chr9 72579301 72579767 -45282860 - LTR40a LTR ERVL 0 519 1 2339 77 0 17 chr9 72579990 72580288 -45282339 - AluY SINE Alu -18 293 1 2257 101 3 3 chr9 72580290 72580587 -45282040 - AluSc SINE Alu -12 297 1 230 229 219 29 chr9 72582515 72582620 -45280007 + MIR SINE MIR 20 144 -118 286 276 13 0 chr9 72582831 72582983 -45279644 + (TG)n Simple_repeat Simple_repeat 2 155 0 2367 91 7 0 chr9 72583097 72583405 -45279222 + AluSp SINE Alu 1 310 -3 220 214 60 8 chr9 72583570 72583687 -45278940 + (TA)n Simple_repeat Simple_repeat 2 124 0 206 54 0 54 chr9 72584419 72584456 -45278171 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 198 296 95 37 chr9 72584507 72584696 -45277931 + MIR SINE MIR 20 219 -43 381 300 132 18 chr9 72585245 72585472 -45277155 - MIR SINE MIR -5 257 5 251 239 0 80 chr9 72585737 72585825 -45276802 + MIR SINE MIR 58 138 -124 201 244 22 0 chr9 72586247 72586292 -45276335 + L2 LINE L2 3267 3312 -1 21 0 0 0 chr9 72588696 72588717 -45273910 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr9 72589413 72589442 -45273185 + AT_rich Low_complexity Low_complexity 1 29 0 322 282 126 10 chr9 72589969 72590072 -45272555 + MIR SINE MIR 20 134 -128 1100 165 46 27 chr9 72590163 72590423 -45272204 - L1MA6 LINE L1 0 6300 6036 43356 35 22 1 chr9 72590871 72596892 -45265735 + L1PA2 LINE L1 2 6151 -4 28 48 0 0 chr9 72596892 72596934 -45265693 + AT_rich Low_complexity Low_complexity 1 42 0 501 279 88 47 chr9 72597271 72597494 -45265133 + MIR SINE MIR 22 262 0 495 236 135 38 chr9 72598281 72598548 -45264079 - L1MC4a LINE L1 -1639 6169 5877 525 109 11 33 chr9 72598562 72598654 -45263973 - L1PB2 LINE L1 -2 6149 6060 284 266 21 21 chr9 72598740 72598834 -45263793 + L3 LINE CR1 411 504 -1073 262 224 79 0 chr9 72598909 72598985 -45263642 + MIR SINE MIR 99 180 -82 1279 133 10 0 chr9 72599085 72599280 -45263347 + AluJb SINE Alu 114 310 -2 542 308 91 5 chr9 72599281 72599489 -45263138 + MLT1B LTR MaLR 165 390 0 301 291 26 17 chr9 72599562 72599679 -45262948 - L1ME3A LINE L1 -208 5962 5845 537 285 110 15 chr9 72599845 72600045 -45262582 + MIR SINE MIR 15 233 -29 214 263 105 0 chr9 72600017 72600074 -45262553 + L2 LINE L2 3251 3313 0 * 330 313 69 7 chr9 72600111 72600255 -45262372 + L3 LINE CR1 608 760 -817 366 371 0 0 chr9 72602072 72602188 -45260439 + FLAM_A SINE Alu 1 116 -17 200 219 0 47 chr9 72603516 72603580 -45259047 + MIR3 SINE MIR 6 66 -142 308 312 41 17 chr9 72603995 72604130 -45258497 - MER90 LTR ERV1 -426 173 28 317 332 100 18 chr9 72604430 72604658 -45257969 - HERVR LTR ERV1 -3721 3671 3454 243 0 0 0 chr9 72605094 72605121 -45257506 + (TATG)n Simple_repeat Simple_repeat 4 30 0 232 258 186 10 chr9 72605276 72605373 -45257254 - L2 LINE L2 -768 2546 2433 974 207 114 73 chr9 72605376 72605719 -45256908 - MER44D DNA MER2_type -81 524 113 275 205 137 7 chr9 72605719 72605835 -45256792 + AluS SINE Alu 18 92 -211 1319 243 67 31 chr9 72808693 72809112 -45053515 - MER57B LTR ERV1 0 434 1 1175 154 0 0 chr9 72809684 72809859 -45052768 + AluSg/x SINE Alu 130 304 -6 339 196 152 0 chr9 72810351 72810443 -45052184 - L2 LINE L2 0 3313 3208 1946 122 44 10 chr9 72810923 72811217 -45051410 - AluSq SINE Alu -9 304 1 230 158 0 0 chr9 72811227 72811265 -45051362 - HsTC2 DNA Tc2 -1824 74 37 423 276 9 0 chr9 72811413 72811518 -45051109 + MIR SINE MIR 147 252 -10 237 132 0 0 chr9 72811620 72811658 -45050969 + (T)n Simple_repeat Simple_repeat 1 38 0 1376 142 0 0 chr9 72811685 72811890 -45050737 - MER1B DNA MER1_type 0 339 135 1051 108 0 0 chr9 72811891 72812030 -45050597 + AluSq/x SINE Alu 1 139 -174 227 139 28 0 chr9 72812133 72812169 -45050458 - Alu SINE Alu -133 170 134 2318 85 3 13 chr9 72812169 72812475 -45050152 - AluY SINE Alu -8 303 1 224 304 62 32 chr9 72812739 72812867 -45049760 + MIR SINE MIR 30 162 -64 351 60 0 0 chr9 72813439 72813489 -45049138 + (GA)n Simple_repeat Simple_repeat 1 50 0 234 0 0 0 chr9 72813489 72813515 -45049112 + (TG)n Simple_repeat Simple_repeat 2 27 0 513 308 72 45 chr9 72813524 72813708 -45048919 + L2 LINE L2 1446 1624 -1690 225 0 0 0 chr9 72813708 72813733 -45048894 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 1434 199 0 21 chr9 72813733 72814020 -45048607 - AluJo SINE Alu -31 281 1 513 308 72 45 chr9 72814020 72814165 -45048462 + L2 LINE L2 1623 1785 -1529 1772 159 0 24 chr9 72814342 72814631 -45047996 + AluJo SINE Alu 1 282 -30 243 0 0 0 chr9 72814634 72814661 -45047966 + (TAA)n Simple_repeat Simple_repeat 2 28 0 291 260 63 55 chr9 72814744 72814871 -45047756 + MIR SINE MIR 84 211 -51 187 365 16 0 chr9 72814889 72814952 -45047675 + L2 LINE L2 3147 3210 -62 342 0 0 0 chr9 72815578 72815616 -45047011 + (TG)n Simple_repeat Simple_repeat 2 39 0 793 246 11 0 chr9 72815616 72815795 -45046832 - L1MD2 LINE L1 -14 6345 6165 513 217 6 0 chr9 72815801 72815908 -45046719 - LTR25 LTR ERV1 0 794 456 329 288 116 88 chr9 72816062 72816277 -45046350 - L1MD2 LINE L1 -181 6178 5958 1831 69 0 0 chr9 72816281 72816497 -45046130 - AluSq SINE Alu -65 248 33 2701 187 45 41 chr9 72816498 72816721 -45045906 - L1MD2 LINE L1 -457 5902 5681 1034 182 0 0 chr9 72816721 72816886 -45045741 - FRAM SINE Alu 0 166 2 2701 187 45 41 chr9 72816886 72817261 -45045366 - L1MD2 LINE L1 -678 5681 5309 1088 157 0 18 chr9 72817261 72817427 -45045200 - FRAM SINE Alu -3 163 1 2701 187 45 41 chr9 72817427 72817439 -45045188 - L1MD2 LINE L1 -1050 5309 5299 1757 105 159 4 chr9 72817439 72817697 -45044930 - AluSx SINE Alu -3 299 2 2701 187 45 41 chr9 72817697 72817719 -45044908 - L1MD2 LINE L1 -1060 5299 5268 329 244 0 0 chr9 72817733 72817811 -45044816 - L1 LINE L1 -2983 3163 3086 344 299 110 66 chr9 72818155 72818657 -45043970 - L1MD2 LINE L1 -979 5167 4644 2127 163 106 14 chr9 72818878 72819301 -45043326 - L1MC3 LINE L1 -144 7641 7180 287 247 26 26 chr9 72819306 72819383 -45043244 - MLT1F1 LTR MaLR -456 111 35 300 187 220 0 chr9 72819383 72819474 -45043153 - L1MC3 LINE L1 -688 7097 6987 954 217 63 5 chr9 72819721 72819892 -45042735 - MER58A DNA MER1_type -2197 223 37 1708 135 132 0 chr9 72819892 72820158 -45042469 + AluSx SINE Alu 2 302 0 954 217 63 5 chr9 72820158 72820193 -45042434 - MER58A DNA MER1_type -2383 37 5 2501 87 0 0 chr9 72820546 72820857 -45041770 - AluY SINE Alu 0 311 1 2150 123 13 0 chr9 72821605 72821913 -45040714 - AluSx SINE Alu 0 312 1 1482 238 29 61 chr9 72822378 72822915 -45039712 - MER57-int LTR ERV1 -1357 6180 2460 528 296 54 27 chr9 72823015 72823275 -45039352 + MER57-int LTR ERV1 6881 7147 -390 1506 224 39 55 chr9 72823276 72823713 -45038914 + MER57B LTR ERV1 5 434 0 203 267 0 0 chr9 72824364 72824424 -45038203 + A-rich Low_complexity Low_complexity 2 61 0 1369 190 39 84 chr9 72825549 72825881 -45036746 + MER45B DNA AcHobo 24 340 -700 31 0 0 0 chr9 72828153 72828184 -45034443 + AT_rich Low_complexity Low_complexity 1 31 0 760 213 27 37 chr9 72828374 72828562 -45034065 + MLT1J2 LTR MaLR 24 209 -241 1864 183 0 0 chr9 72828654 72828965 -45033662 - AluJb SINE Alu 0 312 2 2619 34 7 0 chr9 72829005 72829303 -45033324 - AluY SINE Alu -11 300 1 629 226 80 61 chr9 72829308 72829520 -45033107 - MIR SINE MIR -43 219 4 1423 153 5 0 chr9 72830429 72830652 -45031975 - AluSg/x SINE Alu -13 297 74 1795 153 7 10 chr9 72830729 72831023 -45031604 - L1MA6 LINE L1 -4 6296 6004 240 274 133 26 chr9 72831043 72831156 -45031471 - L2 LINE L2 -10 3262 3138 1417 288 160 30 chr9 72831341 72832182 -45030445 - L2 LINE L2 0 3313 2294 2225 113 0 7 chr9 72832182 72832483 -45030144 + AluSq SINE Alu 1 299 -14 1417 288 160 30 chr9 72832483 72832586 -45030041 - L2 LINE L2 -1019 2294 2206 1964 170 0 0 chr9 72832750 72833056 -45029571 + AluJb SINE Alu 1 306 -6 285 297 166 23 chr9 72833379 72833554 -45029073 + MIR3 SINE MIR 6 205 -3 1558 132 132 4 chr9 72834941 72835215 -45027412 + AluSx SINE Alu 1 306 0 390 268 153 51 chr9 72835229 72835386 -45027241 - MER5A DNA MER1_type -13 176 4 215 239 68 57 chr9 72836229 72836317 -45026310 - MIR3 SINE MIR -11 197 109 211 284 97 30 chr9 72837051 72837185 -45025442 - MIR SINE MIR -71 191 49 491 241 13 32 chr9 72837336 72837487 -45025140 - L2 LINE L2 0 3313 3164 1562 161 22 77 chr9 72837487 72837680 -45024947 - AluJo SINE Alu -18 294 123 1748 140 39 25 chr9 72837680 72837993 -45024634 - AluJo SINE Alu 0 312 1 1562 161 22 77 chr9 72837993 72838110 -45024517 - AluJo SINE Alu -189 123 1 215 152 43 22 chr9 72839826 72839872 -45022755 + MIR SINE MIR 82 128 -80 562 146 0 24 chr9 72840157 72840239 -45022388 - AluJo SINE Alu -16 296 217 1041 139 40 23 chr9 72840247 72840420 -45022207 - AluSg/x SINE Alu -5 305 130 * 1205 174 4 52 chr9 72840419 72840649 -45021978 - AluJo SINE Alu -80 232 14 1051 138 32 0 chr9 72840757 72840945 -45021682 + AluSg/x SINE Alu 118 311 -1 2333 108 0 6 chr9 72841663 72841978 -45020649 - AluSq SINE Alu 0 313 1 457 263 143 34 chr9 72842055 72842264 -45020363 - MIR SINE MIR 0 262 31 1991 151 0 3 chr9 72843411 72843709 -45018918 + AluJb SINE Alu 1 297 -15 421 234 124 7 chr9 72843985 72844122 -45018505 - MIR3 SINE MIR -34 174 22 2158 129 0 0 chr9 72845831 72846125 -45016502 - AluSx SINE Alu -18 294 1 702 192 22 64 chr9 72846973 72847148 -45015479 + MER5B DNA MER1_type 1 189 0 355 282 48 0 chr9 72847366 72847469 -45015158 + MER5B DNA MER1_type 7 114 -64 270 296 77 104 chr9 72847607 72847827 -45014800 - L2 LINE L2 -97 3175 2962 277 310 18 9 chr9 72848102 72848215 -45014412 - MLT1K LTR MaLR -10 578 465 623 314 18 18 chr9 72848373 72848650 -45013977 - MLT1L LTR MaLR -338 277 1 492 260 179 15 chr9 72848665 72848861 -45013766 + MIR SINE MIR 4 231 -31 3428 191 139 17 chr9 72849286 72850475 -45012152 - L1MDa LINE L1 -3828 2712 1358 1274 215 73 10 chr9 72850738 72851026 -45011601 - AluJo SINE Alu -4 308 3 245 269 39 13 chr9 72851127 72851205 -45011422 - MIR SINE MIR -78 130 51 348 322 51 8 chr9 72851709 72851827 -45010800 - L2 LINE L2 0 3272 3150 504 324 84 31 chr9 72852199 72853043 -45009584 + L1M4 LINE L1 3084 3972 -2174 1238 173 49 35 chr9 72853127 72853254 -45009373 + AluJb SINE Alu 1 134 -178 204 67 0 0 chr9 72853254 72853284 -45009343 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 1238 173 49 35 chr9 72853284 72853382 -45009245 + AluJb SINE Alu 134 229 -83 186 326 120 0 chr9 72853528 72853620 -45009007 + L3 LINE CR1 355 457 -1120 384 22 0 0 chr9 72853746 72853791 -45008836 + (CA)n Simple_repeat Simple_repeat 2 46 0 300 376 0 15 chr9 72854304 72854437 -45008190 - L3b LINE CR1 -345 1238 1108 470 309 86 5 chr9 72854512 72854732 -45007895 - MIR SINE MIR -14 248 11 2228 93 10 3 chr9 72854769 72855070 -45007557 - AluSp SINE Alu -10 303 1 445 306 0 24 chr9 72858467 72858637 -45003990 + (TGG)n Simple_repeat Simple_repeat 3 168 0 416 273 61 8 chr9 72858989 72859121 -45003506 - MIR SINE MIR -7 255 117 1393 162 46 33 chr9 72859920 72860223 -45002404 - L1M4 LINE L1 -923 5223 4917 343 291 0 0 chr9 72860234 72860320 -45002307 - L2 LINE L2 -5 3308 3223 205 182 36 0 chr9 72860492 72860547 -45002080 + (CATATA)n Simple_repeat Simple_repeat 2 58 0 21 71 0 0 chr9 72860562 72860604 -45002023 + AT_rich Low_complexity Low_complexity 1 42 0 2355 92 0 0 chr9 72860652 72860945 -45001682 - AluSx SINE Alu -19 293 1 291 54 0 0 chr9 72860972 72861009 -45001618 + (CA)n Simple_repeat Simple_repeat 2 38 0 6445 87 4 4 chr9 72861784 72863123 -44999504 - L1PA10 LINE L1 0 6168 4861 1415 97 0 0 chr9 72863224 72863400 -44999227 + AluSp SINE Alu 130 305 -8 398 279 36 5 chr9 72863615 72863791 -44998836 + MIR SINE MIR 10 195 -13 512 211 86 16 chr9 72864657 72864785 -44997842 - FRAM SINE Alu -16 160 24 1268 212 0 19 chr9 72865067 72865331 -44997296 - MLT1D LTR MaLR 0 505 247 809 109 6 64 chr9 72865339 72865495 -44997132 + MLT1B LTR MaLR 1 147 -218 1856 117 77 0 chr9 72865503 72865776 -44996851 + AluSx SINE Alu 1 294 -18 555 149 23 0 chr9 72865778 72865865 -44996762 + AluSg/x SINE Alu 203 291 -18 870 202 19 12 chr9 72865869 72866070 -44996557 + MLT1B LTR MaLR 158 374 -11 911 166 12 115 chr9 72866098 72866351 -44996276 - MLT1D LTR MaLR -278 227 1 413 287 8 0 chr9 72866442 72866564 -44996063 + MIR SINE MIR 17 139 -123 802 307 73 56 chr9 72866613 72867540 -44995087 - L2 LINE L2 -8 3264 2326 360 291 133 13 chr9 72867631 72867782 -44994845 + MIR3 SINE MIR 37 205 -3 276 254 203 14 chr9 72868206 72868344 -44994283 - MIR3 SINE MIR -44 164 1 405 286 104 28 chr9 72869767 72869949 -44992678 - MLT1J LTR MaLR -10 501 306 249 108 0 0 chr9 72869949 72869986 -44992641 + (TCCCC)n Simple_repeat Simple_repeat 4 40 0 2245 107 3 7 chr9 72870009 72870317 -44992310 - AluY SINE Alu -4 307 1 1116 89 0 0 chr9 72870317 72870452 -44992175 - AluSq/x SINE Alu -178 135 1 741 269 50 74 chr9 72870479 72870762 -44991865 - MLT1J LTR MaLR -200 311 36 275 333 19 31 chr9 72870876 72871038 -44991589 - L2 LINE L2 -37 3276 3117 189 344 31 0 chr9 72873943 72874007 -44988620 - L2 LINE L2 -24 3289 3224 1167 258 121 33 chr9 72874335 72875028 -44987599 + L1MDb LINE L1 1362 2115 -4291 243 178 0 0 chr9 72875032 72875077 -44987550 + L1MDb LINE L1 2908 2952 -3454 2232 112 3 0 chr9 72875120 72875415 -44987212 - AluSx SINE Alu -16 296 1 2013 164 0 3 chr9 72875415 72875725 -44986902 - AluJo SINE Alu -2 310 1 6925 208 60 49 chr9 72875727 72876021 -44986606 + L1MDb LINE L1 2937 3226 -3180 2213 118 0 7 chr9 72876021 72876325 -44986302 + AluSx SINE Alu 1 302 -10 6925 208 60 49 chr9 72876325 72877428 -44985199 + L1MDb LINE L1 3226 4315 -2091 1732 192 7 3 chr9 72877428 72877735 -44984892 + AluJo SINE Alu 1 308 -4 6925 208 60 49 chr9 72877735 72877973 -44984654 + L1MDb LINE L1 4315 4549 -1857 2261 101 3 13 chr9 72877973 72878107 -44984520 + AluSc SINE Alu 1 135 -174 2337 77 3 16 chr9 72878107 72878418 -44984209 + AluY SINE Alu 1 307 -4 2261 101 3 13 chr9 72878418 72878589 -44984038 + AluSc SINE Alu 135 303 -6 6925 208 60 49 chr9 72878589 72879174 -44983453 + L1MDb LINE L1 4549 5184 -1222 2185 86 10 3 chr9 72879188 72879478 -44983149 + AluY SINE Alu 1 292 -19 5096 209 6 6 chr9 72879483 72880538 -44982089 - L1 LINE L1 -1905 4241 3187 1594 219 72 16 chr9 72880565 72881323 -44981304 + L1MDb LINE L1 5181 5973 -743 207 0 0 0 chr9 72881390 72881413 -44981214 + (CA)n Simple_repeat Simple_repeat 2 24 0 415 260 0 10 chr9 72882334 72882438 -44980189 - L1M4 LINE L1 -1219 4927 4825 2109 165 79 158 chr9 72882587 72882624 -44980003 - L1MC5 LINE L1 -225 7736 7698 1770 166 7 0 chr9 72882624 72882637 -44979990 - AluSx SINE Alu -13 299 288 447 92 0 0 chr9 72882637 72882702 -44979925 + (TATG)n Simple_repeat Simple_repeat 2 66 0 1770 166 7 0 chr9 72882702 72882972 -44979655 - AluSx SINE Alu -24 288 14 2109 165 79 158 chr9 72882972 72883958 -44978669 - L1MC5 LINE L1 -263 7698 6794 2223 116 10 0 chr9 72883960 72884261 -44978366 + AluSp SINE Alu 1 304 -9 2198 109 0 7 chr9 72884261 72884563 -44978064 + AluSx SINE Alu 1 300 -12 396 234 127 12 chr9 72884666 72885276 -44977351 - L1ME4a LINE L1 -151 5970 5297 21 0 0 0 chr9 72885310 72885331 -44977296 + AT_rich Low_complexity Low_complexity 1 21 0 213 39 0 0 chr9 72886563 72886589 -44976038 + (A)n Simple_repeat Simple_repeat 1 26 0 181 206 137 27 chr9 72887094 72887167 -44975460 + MIR3 SINE MIR 104 184 -24 300 203 25 13 chr9 72888019 72888098 -44974529 - MER116 DNA Mariner 0 80 1 22 35 0 0 chr9 72888883 72888912 -44973715 + AT_rich Low_complexity Low_complexity 1 29 0 616 196 118 0 chr9 72889069 72889222 -44973405 - L1ME3A LINE L1 0 6170 6000 694 192 0 0 chr9 72889252 72889377 -44973250 + MLT1D LTR MaLR 381 505 0 211 225 28 42 chr9 72889385 72889456 -44973171 - MIR SINE MIR -181 81 12 248 373 56 20 chr9 72889982 72890234 -44972393 + MLT1L LTR MaLR 347 607 -8 582 218 64 77 chr9 72891367 72891587 -44971040 - Charlie8 DNA MER1_type -2032 385 169 357 24 0 0 chr9 72891742 72891784 -44970843 + (TG)n Simple_repeat Simple_repeat 2 43 0 333 253 11 11 chr9 72891820 72891911 -44970716 - Charlie8 DNA MER1_type -2244 173 83 739 193 33 0 chr9 72891960 72892110 -44970517 + MER5A DNA MER1_type 1 155 -34 424 159 45 11 chr9 72892128 72892216 -44970411 + MER53 DNA DNA 94 184 -5 735 274 32 0 chr9 72892275 72892494 -44970133 + MIR SINE MIR 36 261 -1 1903 88 39 8 chr9 72893654 72893957 -44968670 + AluSg SINE Alu 14 324 0 205 320 20 27 chr9 72895062 72895209 -44967418 + CT-rich Low_complexity Low_complexity 2 147 0 699 252 48 35 chr9 72895748 72895978 -44966649 + MIR SINE MIR 9 241 -21 1834 117 3 32 chr9 72896114 72896397 -44966230 - AluSg SINE Alu 0 310 36 542 118 0 0 chr9 72897225 72897301 -44965326 + AluS SINE Alu 2 77 -236 2023 68 20 0 chr9 72897301 72897553 -44965074 + AluSp SINE Alu 38 294 -19 209 244 0 0 chr9 72899586 72899631 -44962996 + L2 LINE L2 1367 1411 -1903 1709 96 0 0 chr9 72900368 72900576 -44962051 - AluSx SINE Alu -104 208 1 1101 209 23 33 chr9 72900577 72900879 -44961748 - L1M4 LINE L1 -981 5165 4867 2326 86 0 13 chr9 72901075 72901379 -44961248 - AluY SINE Alu -11 300 1 2524 59 7 0 chr9 72901892 72902196 -44960431 - AluY SINE Alu -5 306 1 274 273 50 43 chr9 72902315 72902476 -44960151 + HAL1b LINE L1 498 659 -689 2131 120 7 3 chr9 72902747 72903056 -44959571 + AluSx SINE Alu 1 310 -2 405 221 44 18 chr9 72903217 72903330 -44959297 + L2 LINE L2 3182 3297 -16 200 219 0 0 chr9 72903383 72903424 -44959203 - MIR SINE MIR -87 121 81 2340 109 0 0 chr9 72904395 72904699 -44957928 - AluSx SINE Alu -8 304 1 711 169 0 29 chr9 72904843 72904979 -44957648 + FLAM_C SINE Alu 1 132 -1 27 0 0 0 chr9 72904980 72905007 -44957620 + AT_rich Low_complexity Low_complexity 1 27 0 333 250 0 0 chr9 72905209 72905281 -44957346 - MER116 DNA Mariner -1 79 8 355 279 27 41 chr9 72905289 72905436 -44957191 - MIR SINE MIR -112 150 6 237 164 27 118 chr9 72906111 72906221 -44956406 - HAL1b LINE L1 -2 1346 1247 1939 96 11 4 chr9 72908771 72909032 -44953595 + AluSq SINE Alu 1 263 -50 234 62 0 0 chr9 72909035 72909067 -44953560 + (CAAAA)n Simple_repeat Simple_repeat 1 32 0 2266 111 0 7 chr9 72909582 72909889 -44952738 - AluSx SINE Alu -7 305 1 212 306 82 10 chr9 72910268 72910366 -44952261 + L2 LINE L2 3143 3247 -25 2423 72 3 0 chr9 72910576 72910867 -44951760 - AluSc SINE Alu -17 292 1 1699 121 101 48 chr9 72911518 72911873 -44950754 - THE1C LTR MaLR -1 374 1 235 280 70 10 chr9 72912047 72912147 -44950480 - MIR3 SINE MIR -37 171 66 2201 109 0 0 chr9 72912162 72912467 -44950160 + AluSc SINE Alu 1 305 0 727 254 64 112 chr9 72912939 72913243 -44949384 - MLT1L LTR MaLR -31 584 320 2477 61 0 3 chr9 72913243 72913537 -44949090 - AluSg SINE Alu -17 293 1 727 254 64 112 chr9 72913537 72913823 -44948804 - MLT1L LTR MaLR -295 320 22 2287 154 62 166 chr9 72913999 72914166 -44948461 - LTR8A LTR ERV1 0 727 544 2189 112 3 3 chr9 72914166 72914469 -44948158 - AluSq SINE Alu -10 303 1 2410 88 7 0 chr9 72914479 72914784 -44947843 - AluY SINE Alu -4 307 1 2287 154 62 166 chr9 72914784 72915417 -44947210 - LTR8A LTR ERV1 -192 535 1 1122 244 83 65 chr9 72915485 72915947 -44946680 - MLT1J LTR MaLR -4 507 34 206 62 31 0 chr9 72915947 72915979 -44946648 + (CAA)n Simple_repeat Simple_repeat 2 34 0 1122 244 83 65 chr9 72915979 72916012 -44946615 - MLT1J LTR MaLR -477 34 3 37 39 0 0 chr9 72916453 72916504 -44946123 + AT_rich Low_complexity Low_complexity 1 51 0 2455 66 3 10 chr9 72916833 72917137 -44945490 - AluY SINE Alu -9 302 1 331 192 26 51 chr9 72917408 72917486 -44945141 - MIR3 SINE MIR -36 172 97 308 311 102 23 chr9 72917540 72917739 -44944888 - L2 LINE L2 -814 2500 2273 2556 84 0 0 chr9 72917739 72918049 -44944578 - AluSx SINE Alu -2 310 1 308 311 102 23 chr9 72918049 72918113 -44944514 - L2 LINE L2 -1041 2273 2216 850 229 93 52 chr9 72918192 72918323 -44944304 + MER102b DNA MER1_type 19 143 -1285 2361 113 0 0 chr9 72918323 72918632 -44943995 - AluSg SINE Alu -1 309 1 850 229 93 52 chr9 72918632 72918810 -44943817 + MER102b DNA MER1_type 143 341 0 409 336 119 40 chr9 72918981 72919428 -44943199 + L2 LINE L2 2424 2905 -409 2538 37 7 3 chr9 72919589 72919885 -44942742 - AluY SINE Alu -14 297 1 318 307 22 36 chr9 72919901 72920038 -44942589 + L2 LINE L2 3134 3268 -4 1393 115 9 23 chr9 72920113 72920330 -44942297 - AluJo SINE Alu -15 297 84 1302 300 67 79 chr9 72921824 72923201 -44939426 - HUERS-P3 LTR ERV1 -1774 3024 1536 310 272 40 32 chr9 72923373 72923498 -44939129 - HUERS-P3 LTR ERV1 -7108 1811 1686 1740 169 17 17 chr9 72923527 72923828 -44938799 - AluJb SINE Alu -11 301 1 2324 73 3 19 chr9 72925236 72925552 -44937075 + AluY SINE Alu 1 311 0 1687 188 13 7 chr9 72926099 72926397 -44936230 - AluJb SINE Alu -12 300 1 2327 109 0 0 chr9 72926468 72926770 -44935857 - AluSx SINE Alu -10 302 1 503 256 94 42 chr9 72926793 72927153 -44935474 - L1MC4a LINE L1 -1747 6061 5683 510 329 23 23 chr9 72928459 72928675 -44933952 - MIR SINE MIR -27 235 20 297 0 0 0 chr9 72928864 72928897 -44933730 + (CA)n Simple_repeat Simple_repeat 1 33 0 1865 143 16 19 chr9 72929921 72930229 -44932398 + AluJb SINE Alu 5 311 -1 1140 139 29 0 chr9 72930266 72930439 -44932188 - MER20 DNA MER1_type -41 178 1 2549 67 0 0 chr9 72930627 72930927 -44931700 + AluY SINE Alu 1 300 -11 2545 44 3 0 chr9 72931856 72932150 -44930477 - AluY SINE Alu -16 295 1 2186 102 41 0 chr9 72932415 72932709 -44929918 - AluSq SINE Alu -7 306 1 1951 170 3 3 chr9 72933719 72934031 -44928596 - AluJb SINE Alu 0 312 1 185 59 59 0 chr9 72934675 72934709 -44927918 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 382 167 83 0 chr9 72935264 72935336 -44927291 + MER5A DNA MER1_type 7 84 -105 2572 54 0 0 chr9 72935850 72936144 -44926483 - AluY SINE Alu -17 294 1 2480 158 27 14 chr9 72936271 72936715 -44925912 - L1MB7 LINE L1 -1 6183 5734 363 305 85 23 chr9 72937413 72937590 -44925037 + L3 LINE CR1 1044 1231 -346 1574 148 84 37 chr9 72937736 72938034 -44924593 - AluJo SINE Alu 0 312 1 606 269 99 0 chr9 72938562 72938785 -44923842 + MIR SINE MIR 2 246 -16 2399 63 0 3 chr9 72939207 72939494 -44923133 - AluY SINE Alu -21 290 5 2454 77 3 0 chr9 72940003 72940302 -44922325 + AluSq SINE Alu 1 300 -13 2536 193 55 25 chr9 72940574 72941122 -44921505 - MER74B LTR ERVL 0 622 59 729 280 35 17 chr9 72941365 72941606 -44921021 + MIR SINE MIR 16 261 -1 2496 74 3 0 chr9 72941901 72942211 -44920416 - AluY SINE Alu 0 311 1 656 292 67 57 chr9 72942316 72942717 -44919910 - MLT1I LTR MaLR 0 409 5 371 239 100 96 chr9 72942965 72943076 -44919551 + MER5C DNA MER1_type 3 112 -212 2270 74 7 14 chr9 72943076 72943373 -44919254 - AluSc SINE Alu -14 295 1 371 239 100 96 chr9 72943373 72943512 -44919115 + MER5C DNA MER1_type 112 254 -70 488 59 29 0 chr9 72943733 72943801 -44918826 + MER41A LTR ERV1 400 469 -85 828 57 0 0 chr9 72943808 72943914 -44918713 + (GAA)n Simple_repeat Simple_repeat 2 107 0 214 310 49 14 chr9 72943967 72944109 -44918518 - L2 LINE L2 -1339 1975 1829 2296 84 7 3 chr9 72944753 72945052 -44917575 + AluY SINE Alu 1 300 -11 2439 106 0 0 chr9 72945059 72945371 -44917256 + AluSp SINE Alu 1 312 -1 4933 122 25 22 chr9 72945569 72945919 -44916708 - L1MA3 LINE L1 0 6305 5958 2491 58 3 0 chr9 72945919 72946214 -44916413 - AluY SINE Alu -14 297 2 4933 122 25 22 chr9 72946214 72946688 -44915939 - L1MA3 LINE L1 -347 5958 5478 203 213 66 66 chr9 72946939 72947000 -44915627 + MIR SINE MIR 16 76 -186 26 50 0 0 chr9 72948562 72948602 -44914025 + AT_rich Low_complexity Low_complexity 1 40 0 579 235 87 83 chr9 72948785 72949062 -44913565 - L1ME LINE L1 -4815 1446 1169 * 2324 184 140 64 chr9 72949061 72949595 -44913032 - L1MD3 LINE L1 0 7995 7503 350 308 0 0 chr9 72949595 72949686 -44912941 - MLT1F1 LTR MaLR -442 125 35 2324 184 140 64 chr9 72949686 72950112 -44912515 - L1MD3 LINE L1 -492 7503 6691 1865 238 131 37 chr9 72950140 72950942 -44911685 - L1ME LINE L1 -4979 1101 260 2269 66 0 4 chr9 72950943 72951214 -44911413 + AluSc SINE Alu 1 270 -39 511 101 61 182 chr9 72951349 72951443 -44911184 - MER85 DNA T2_type -9 130 59 2443 66 30 0 chr9 72951443 72951745 -44910882 - AluY SINE Alu 0 311 1 511 101 61 182 chr9 72951745 72951798 -44910829 - MER85 DNA T2_type -80 59 1 751 258 56 9 chr9 72951814 72952027 -44910600 - L1ME LINE L1 -5840 230 8 749 125 0 44 chr9 72952444 72952580 -44910047 - L1PA16 LINE L1 0 6166 6037 1815 171 23 7 chr9 72952587 72952886 -44909741 - AluJb SINE Alu -8 304 1 243 0 0 0 chr9 72953058 72953085 -44909542 + (CA)n Simple_repeat Simple_repeat 1 27 0 396 332 43 23 chr9 72953099 72953373 -44909254 + L1MDa LINE L1 1534 1938 -805 1058 210 26 34 chr9 72953373 72953640 -44908987 + MLT1G1 LTR MaLR 1 265 -330 653 228 102 92 chr9 72953704 72953910 -44908717 + MLT1H1 LTR MaLR 358 544 -11 305 331 74 35 chr9 72954225 72954536 -44908091 + L1MDa LINE L1 2315 2597 -3785 313 346 104 5 chr9 72954600 72954802 -44907825 + L1ME3A LINE L1 5664 5885 -285 187 152 0 0 chr9 72955340 72955373 -44907254 - L2 LINE L2 -8 3305 3273 270 308 29 10 chr9 72956373 72956477 -44906150 - L2 LINE L2 -279 3034 2929 485 278 0 0 chr9 72956498 72956613 -44906014 + MIR3 SINE MIR 83 197 -11 2258 74 42 3 chr9 72956676 72956961 -44905666 + AluY SINE Alu 1 296 -15 1378 153 0 0 chr9 72956985 72957187 -44905440 + AluJo SINE Alu 6 207 -105 209 244 0 0 chr9 72957924 72957969 -44904658 - L2 LINE L2 -1903 1411 1367 208 265 0 59 chr9 72958801 72958903 -44903724 - L2 LINE L2 -220 3052 2957 2653 52 0 0 chr9 72962864 72963169 -44899458 + AluY SINE Alu 1 305 -6 3844 150 154 118 chr9 72964115 72964638 -44897989 + L1MC3 LINE L1 6564 7067 -718 291 287 32 21 chr9 72964638 72964732 -44897895 + MLT1F1 LTR MaLR 36 130 -437 3844 150 154 118 chr9 72964732 72965064 -44897563 + L1MC3 LINE L1 7067 7386 -399 1951 137 0 3 chr9 72965064 72965376 -44897251 + AluJb SINE Alu 1 311 0 3844 150 154 118 chr9 72965376 72965557 -44897070 + L1MC3 LINE L1 7386 7736 -49 453 198 19 28 chr9 72965557 72965663 -44896964 - AluY SINE Alu 0 311 207 1554 127 0 22 chr9 72965736 72965965 -44896662 - AluJo SINE Alu -88 224 1 21 0 0 0 chr9 72965996 72966017 -44896610 + AT_rich Low_complexity Low_complexity 1 21 0 1544 147 155 4 chr9 72966017 72966138 -44896489 + AluJb SINE Alu 2 103 -199 369 0 0 0 chr9 72966138 72966179 -44896448 + (TAA)n Simple_repeat Simple_repeat 2 42 0 1544 147 155 4 chr9 72966179 72966309 -44896318 + AluJb SINE Alu 103 291 -11 2338 74 3 0 chr9 72966955 72967253 -44895374 + AluY SINE Alu 1 299 -12 463 277 78 12 chr9 72968159 72968325 -44894302 + MIR3 SINE MIR 4 180 -28 1719 226 52 34 chr9 72970997 72971436 -44891191 - MLT1F1 LTR MaLR -7 560 114 370 218 36 73 chr9 72971532 72971642 -44890985 - MLT1F1 LTR MaLR -436 106 1 1251 261 92 33 chr9 72972192 72972683 -44889944 + LTR33A LTR ERVL 1 520 -3 1496 194 50 7 chr9 72974470 72974753 -44887874 - AluJb SINE Alu -17 295 1 22 56 0 0 chr9 72974760 72974796 -44887831 + AT_rich Low_complexity Low_complexity 1 36 0 1923 62 0 0 chr9 72974806 72975033 -44887594 + AluY SINE Alu 77 303 -8 25 83 0 0 chr9 72975049 72975109 -44887518 + AT_rich Low_complexity Low_complexity 1 60 0 514 265 85 4 chr9 72975213 72975558 -44887069 - L1ME4a LINE L1 -229 5892 5493 255 196 186 0 chr9 72975579 72975676 -44886951 - L1P5 LINE L1 -726 5430 5316 232 294 42 21 chr9 72975854 72975997 -44886630 - L1ME4a LINE L1 -1098 5048 4903 2308 89 10 0 chr9 72976073 72976364 -44886263 - AluSc SINE Alu -15 294 1 2117 70 28 42 chr9 72976393 72976703 -44885924 + AluY SINE Alu 1 306 0 25 0 0 0 chr9 72976703 72976728 -44885899 + AT_rich Low_complexity Low_complexity 1 25 0 342 301 36 72 chr9 72976868 72976992 -44885635 - L1MC4a LINE L1 -1866 5942 5826 2108 120 7 3 chr9 72976992 72977301 -44885326 - AluSx SINE Alu -2 310 1 342 301 36 72 chr9 72977301 72977369 -44885258 - L1MC4a LINE L1 -1982 5826 5757 287 273 50 43 chr9 72977572 72977733 -44884894 - HAL1b LINE L1 -689 659 498 2506 54 7 0 chr9 72977852 72978150 -44884477 + AluY SINE Alu 1 300 -11 3222 205 59 39 chr9 72978241 72978325 -44884302 + L1ME2 LINE L1 5191 5272 -892 2227 104 34 0 chr9 72978325 72978623 -44884004 - AluSx SINE Alu -4 308 1 3222 205 59 39 chr9 72978623 72979443 -44883184 + L1ME2 LINE L1 5272 6130 -34 2077 119 10 7 chr9 72979445 72979739 -44882888 + AluSx SINE Alu 1 295 -17 322 71 0 0 chr9 72979759 72979801 -44882826 + MLT2B3 LTR ERVL 1 42 -512 59 46 0 0 chr9 72980330 72980417 -44882210 + AT_rich Low_complexity Low_complexity 1 87 0 1102 172 131 5 chr9 72980741 72980939 -44881688 + MER58A DNA MER1_type 2 224 0 306 270 0 0 chr9 72981982 72982045 -44880582 + L2 LINE L2 3248 3310 -3 2356 59 0 39 chr9 72982236 72982543 -44880084 - AluY SINE Alu 0 311 17 2351 74 10 10 chr9 72982713 72983022 -44879605 + AluY SINE Alu 1 309 -2 252 235 42 17 chr9 72984465 72984584 -44878043 + (TA)n Simple_repeat Simple_repeat 2 123 0 2210 120 0 3 chr9 72985412 72985721 -44876906 - AluSx SINE Alu -4 308 1 2148 92 3 7 chr9 72985729 72986039 -44876588 - AluSp SINE Alu 0 309 1 661 282 51 14 chr9 72986960 72987176 -44875451 - MIR SINE MIR -8 254 31 650 250 83 100 chr9 72988528 72988885 -44873742 - HAL1 LINE L1 -2 2505 2144 1464 147 18 48 chr9 72988885 72989157 -44873470 - AluJo SINE Alu -25 287 24 650 250 83 100 chr9 72989157 72989471 -44873156 - HAL1 LINE L1 -363 2144 741 1408 294 89 28 chr9 72989487 72990069 -44872558 - HAL1 LINE L1 -1852 655 38 2583 30 0 7 chr9 72990679 72990976 -44871651 - AluY SINE Alu -16 295 1 2042 93 54 0 chr9 72990982 72991261 -44871366 - AluSx SINE Alu -18 294 1 3042 91 19 65 chr9 72991867 72992187 -44870440 + L1PA15 LINE L1 5719 6013 -152 1674 154 6 61 chr9 72992187 72992498 -44870129 + AluJo SINE Alu 1 294 -18 3042 91 19 65 chr9 72992498 72992641 -44869986 + L1PA15 LINE L1 6013 6161 -4 193 349 23 35 chr9 72992838 72992924 -44869703 + MIR3 SINE MIR 11 95 -113 256 325 0 24 chr9 72993010 72993093 -44869534 - MIR SINE MIR -112 96 16 194 344 0 16 chr9 72993171 72993232 -44869395 - L2 LINE L2 -1 3312 3253 1943 72 72 11 chr9 72993885 72994183 -44868444 + AluSc SINE Alu 1 314 0 2310 98 7 0 chr9 72994199 72994504 -44868123 + AluSg SINE Alu 1 307 -3 717 257 34 68 chr9 72995504 72995800 -44866827 + MLT1I LTR MaLR 124 409 0 401 308 82 25 chr9 72995845 72996004 -44866623 - MIR SINE MIR -64 198 31 209 133 0 111 chr9 72996214 72996259 -44866368 + MIR SINE MIR 108 147 -61 298 320 39 33 chr9 72997722 72997875 -44864752 + L3b LINE CR1 1116 1269 -314 2266 99 3 0 chr9 72997953 72998247 -44864380 + AluSc SINE Alu 1 295 -14 433 191 98 119 chr9 72998359 72998505 -44864122 - L1ME2 LINE L1 0 6164 6021 2231 113 7 7 chr9 72998505 72998805 -44863822 - AluSx SINE Alu -12 300 1 433 191 98 119 chr9 72998805 72998852 -44863775 - L1ME2 LINE L1 -143 6021 5975 231 327 48 0 chr9 72998863 72998967 -44863660 - MIR SINE MIR -66 142 34 1589 173 0 50 chr9 73000074 73000374 -44862253 + AluJo SINE Alu 1 285 -27 2096 132 3 0 chr9 73000382 73000677 -44861950 + AluSx SINE Alu 1 296 -16 810 329 130 10 chr9 73005434 73005841 -44856786 - L2 LINE L2 0 3313 2858 189 94 0 0 chr9 73006272 73006304 -44856323 + (T)n Simple_repeat Simple_repeat 1 32 0 2020 133 13 3 chr9 73008830 73009139 -44853488 - AluSx SINE Alu 0 312 1 354 184 0 35 chr9 73010010 73010097 -44852530 + MER103 DNA DNA 14 97 -69 268 292 62 0 chr9 73010348 73010444 -44852183 - L2 LINE L2 -31 3241 3140 520 133 15 67 chr9 73010472 73010607 -44852020 - Charlie7 DNA MER1_type -47 2565 2438 205 276 67 29 chr9 73010678 73010783 -44851844 - MER5A DNA MER1_type -63 126 18 286 269 56 19 chr9 73010994 73011102 -44851525 + MIR3 SINE MIR 88 199 -9 2285 112 0 0 chr9 73011111 73011414 -44851213 - AluSx SINE Alu -9 303 1 2118 179 21 12 chr9 73013666 73014112 -44848515 - LTR56 LTR ERV1 0 437 14 631 174 36 7 chr9 73014667 73014855 -44847772 - MER41E LTR ERV1 -38 474 254 1143 265 3 34 chr9 73015060 73015385 -44847242 - MER57-int LTR ERV1 -1948 5589 5275 23 33 0 0 chr9 73015500 73015530 -44847097 + AT_rich Low_complexity Low_complexity 1 30 0 1802 153 36 0 chr9 73015558 73015859 -44846768 - AluJb SINE Alu 0 312 1 1824 114 0 4 chr9 73017697 73017959 -44844668 + AluSq SINE Alu 1 261 -52 1069 283 81 6 chr9 73018347 73018707 -44843920 + LTR16C LTR ERVL 105 491 0 1611 139 69 4 chr9 73018780 73019054 -44843573 - AluJo SINE Alu -20 292 1 2204 97 0 0 chr9 73019204 73019502 -44843125 + AluSg SINE Alu 1 298 -12 918 210 29 65 chr9 73019502 73019843 -44842784 - L1ME LINE L1 -642 5524 5193 1597 169 3 7 chr9 73019854 73020156 -44842471 - AluSg SINE Alu -9 301 1 253 32 0 0 chr9 73020327 73020358 -44842269 - AluY SINE Alu -268 31 1 1728 183 0 0 chr9 73020403 73020693 -44841934 + AluJb SINE Alu 1 290 -22 894 214 5 5 chr9 73020700 73020896 -44841731 - L1ME LINE L1 -974 5172 4977 982 184 11 21 chr9 73020897 73021087 -44841540 + MER54A LTR ERVL 714 901 0 406 276 136 71 chr9 73021087 73021493 -44841134 + HAL1 LINE L1 2076 2507 0 447 55 0 14 chr9 73021501 73021739 -44840888 + AluY SINE Alu 1 311 0 201 154 0 0 chr9 73021779 73021818 -44840809 + T-rich Low_complexity Low_complexity 1 39 0 240 164 91 0 chr9 73021970 73022025 -44840602 + MER53 DNA DNA 1 60 -129 * 465 144 21 10 chr9 73021995 73022092 -44840535 - MER53 DNA DNA -71 118 21 979 184 79 34 chr9 73022575 73022842 -44839785 - L1MC5 LINE L1 -36 7925 7647 1948 112 64 7 chr9 73022868 73023163 -44839464 + AluSx SINE Alu 1 312 0 2371 65 3 0 chr9 73023172 73023479 -44839148 + AluY SINE Alu 1 308 -3 2195 86 0 13 chr9 73023992 73024296 -44838331 + AluY SINE Alu 1 300 -11 207 271 17 17 chr9 73024349 73024408 -44838219 + L2 LINE L2 3253 3311 -2 339 25 0 0 chr9 73024839 73024879 -44837748 + (TG)n Simple_repeat Simple_repeat 2 41 0 251 365 40 8 chr9 73025359 73025485 -44837142 + MIR SINE MIR 18 147 -115 503 277 116 13 chr9 73025931 73026086 -44836541 + MER5B DNA MER1_type 1 171 -7 188 228 25 63 chr9 73026123 73026202 -44836425 - MER5B DNA MER1_type 0 178 103 186 312 65 0 chr9 73026292 73026369 -44836258 + L2 LINE L2 2667 2748 -566 1307 259 70 31 chr9 73026375 73026425 -44836202 - MER87 LTR ERV1 0 541 494 2095 98 0 26 chr9 73026425 73026730 -44835897 + AluSx SINE Alu 1 297 -15 1307 259 70 31 chr9 73026730 73027123 -44835504 - MER87 LTR ERV1 -47 494 81 941 317 112 25 chr9 73027160 73027554 -44835073 + L2 LINE L2 2886 3313 0 2146 102 0 0 chr9 73027669 73027978 -44834649 + AluSg SINE Alu 1 309 0 2245 81 0 23 chr9 73027982 73028291 -44834336 + AluY SINE Alu 1 302 -9 29 0 0 0 chr9 73028291 73028320 -44834307 + AT_rich Low_complexity Low_complexity 1 29 0 889 131 85 17 chr9 73028474 73028650 -44833977 + MER53 DNA DNA 1 188 -1 416 326 62 21 chr9 73028695 73028839 -44833788 + MIR SINE MIR 34 183 -79 1196 71 0 0 chr9 73028839 73028993 -44833634 - AluY SINE Alu -12 299 146 2098 46 4 4 chr9 73028993 73029254 -44833373 - AluY SINE Alu -50 261 1 243 0 0 0 chr9 73029254 73029281 -44833346 + (T)n Simple_repeat Simple_repeat 1 27 0 1404 174 4 8 chr9 73029289 73029531 -44833096 - AluJb SINE Alu -71 241 1 1465 107 85 0 chr9 73029827 73030051 -44832576 - AluSp SINE Alu -70 243 1 531 297 39 118 chr9 73030498 73031111 -44831516 + MLT1K LTR MaLR 16 580 -8 2301 77 0 19 chr9 73031114 73031426 -44831201 + AluY SINE Alu 1 306 -5 594 244 0 0 chr9 73031489 73031624 -44831003 + L1MA10 LINE L1 6193 6327 -7 203 340 50 20 chr9 73031957 73032057 -44830570 + L2 LINE L2 3203 3305 -8 2197 100 0 0 chr9 73033052 73033352 -44829275 + AluSg SINE Alu 3 302 -8 215 219 0 0 chr9 73034323 73034364 -44828263 + MIR SINE MIR 81 121 -87 513 229 30 38 chr9 73034417 73034548 -44828079 - L2 LINE L2 -16 3297 3168 1898 128 3 14 chr9 73034696 73034992 -44827635 + AluSx SINE Alu 1 293 -19 2144 96 6 13 chr9 73034994 73035306 -44827321 + AluY SINE Alu 1 310 -1 2054 112 0 0 chr9 73035311 73035637 -44826990 + AluSc SINE Alu 1 326 0 1966 132 0 0 chr9 73036097 73036386 -44826241 - AluSx SINE Alu -23 289 1 191 236 97 42 chr9 73037248 73037320 -44825307 - MIR SINE MIR -117 91 16 230 265 193 0 chr9 73037326 73037409 -44825218 + MER58 DNA MER1_type 1 99 -2321 * 500 211 0 10 chr9 73037406 73037510 -44825117 + MER58 DNA MER1_type 2318 2420 0 2079 61 8 0 chr9 73037761 73038022 -44824605 + AluY SINE Alu 35 297 -14 265 143 0 0 chr9 73038647 73038689 -44823938 - LTR16C LTR ERVL 0 491 450 1737 267 41 29 chr9 73038693 73039180 -44823447 + MLT1H1 LTR MaLR 5 497 -58 860 134 0 8 chr9 73039180 73039314 -44823313 + FLAM_C SINE Alu 1 133 0 1465 233 34 51 chr9 73039397 73039870 -44822757 - MLT1C LTR MaLR -2 465 1 914 236 105 67 chr9 73039881 73040242 -44822385 - LTR16C LTR ERVL -37 454 80 225 353 13 33 chr9 73040425 73040575 -44822052 - L2 LINE L2 -657 2657 2511 920 208 55 121 chr9 73040708 73041088 -44821539 + L2 LINE L2 2922 3276 -37 1651 172 10 7 chr9 73041112 73041409 -44821218 - AluJo SINE Alu -14 298 1 180 0 0 0 chr9 73041422 73041442 -44821185 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 1874 153 3 3 chr9 73041473 73041774 -44820853 + AluSx SINE Alu 1 301 -11 2446 43 0 7 chr9 73042410 73042712 -44819915 - AluY SINE Alu -11 300 1 228 269 149 0 chr9 73042745 73042812 -44819815 - MIR SINE MIR -146 116 40 226 164 27 118 chr9 73043747 73043857 -44818770 + HAL1b LINE L1 1247 1346 -2 407 279 27 41 chr9 73044534 73044681 -44817946 + MIR SINE MIR 6 150 -112 327 250 0 0 chr9 73044689 73044761 -44817866 + MER116 DNA Mariner 8 79 -1 27 0 0 0 chr9 73044963 73044990 -44817637 + AT_rich Low_complexity Low_complexity 1 27 0 698 176 0 29 chr9 73044991 73045127 -44817500 - FLAM_C SINE Alu -1 132 1 2150 118 0 9 chr9 73045272 73045587 -44817040 + AluSx SINE Alu 1 312 0 209 296 68 11 chr9 73046017 73046105 -44816522 + MIR3 SINE MIR 116 208 0 215 246 35 0 chr9 73046355 73046412 -44816215 - L2 LINE L2 0 3272 3214 1964 123 0 10 chr9 73046852 73047153 -44815474 + AluSg SINE Alu 1 298 -12 1053 168 12 0 chr9 73047224 73047397 -44815230 + MER5A DNA MER1_type 1 175 -14 267 79 0 0 chr9 73048119 73048157 -44814470 + (ATGGTG)n Simple_repeat Simple_repeat 4 41 0 232 172 31 47 chr9 73048520 73048584 -44814043 + MLT1C LTR MaLR 369 431 -36 982 191 111 42 chr9 73048584 73048912 -44813715 - MLT1C LTR MaLR -56 334 5 299 319 44 10 chr9 73048919 73049064 -44813563 + MIR SINE MIR 51 262 0 248 303 15 15 chr9 73050268 73050334 -44812293 - MER5A DNA MER1_type -16 173 108 2675 157 9 2 chr9 73050364 73050797 -44811830 + LOR1a LTR ERV1 58 493 -4 210 37 0 0 chr9 73051070 73051097 -44811530 + (CA)n Simple_repeat Simple_repeat 1 27 0 2102 121 0 0 chr9 73051828 73052134 -44810493 - AluSg SINE Alu -4 306 1 238 250 0 0 chr9 73052537 73052589 -44810038 + LTR30 LTR ERV1 1 52 -670 2734 109 86 0 chr9 73052589 73052983 -44809644 + LTR12 LTR ERV1 53 480 -234 212 262 159 71 chr9 73053204 73053282 -44809345 + MIR SINE MIR 112 207 -55 2116 116 0 3 chr9 73053282 73053585 -44809042 + AluSx SINE Alu 1 302 -10 212 262 159 71 chr9 73053585 73053632 -44808995 + MIR SINE MIR 207 248 -14 300 309 27 9 chr9 73054805 73054915 -44807712 - MIR SINE MIR 0 262 151 1630 147 0 0 chr9 73054919 73055178 -44807449 - AluSp SINE Alu -54 259 1 2332 63 3 3 chr9 73055188 73055487 -44807140 - AluY SINE Alu -8 303 5 180 0 0 0 chr9 73055523 73055543 -44807084 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 1651 172 10 7 chr9 73055556 73055853 -44806774 + AluJo SINE Alu 1 298 -14 920 208 55 121 chr9 73055877 73056257 -44806370 - L2 LINE L2 -37 3276 2922 225 353 13 33 chr9 73056390 73056540 -44806087 + L2 LINE L2 2511 2657 -657 570 234 107 82 chr9 73056723 73056967 -44805660 + LTR16C LTR ERVL 80 329 -162 2116 104 0 0 chr9 73057145 73057460 -44805167 + AluSx SINE Alu 3 317 0 2464 109 6 0 chr9 73057460 73057809 -44804818 - L1PA14 LINE L1 -7 6154 5804 3480 182 74 26 chr9 73057814 73058633 -44803994 - L1MB7 LINE L1 -128 6056 5278 2345 88 0 0 chr9 73058633 73058928 -44803699 - AluSx SINE Alu -17 295 1 3480 182 74 26 chr9 73058928 73059634 -44802993 - L1MB7 LINE L1 -906 5278 4443 2151 87 0 39 chr9 73059634 73059801 -44802826 - AluY SINE Alu -14 297 146 2097 64 43 7 chr9 73059801 73060083 -44802544 - AluY SINE Alu -19 292 1 2151 87 0 39 chr9 73060083 73060224 -44802403 - AluY SINE Alu -165 146 1 3480 182 74 26 chr9 73060224 73060316 -44802311 - L1MB7 LINE L1 -1741 4443 4357 1906 111 13 7 chr9 73060317 73060615 -44802012 - AluSq SINE Alu -2 311 12 1448 75 0 10 chr9 73060732 73060933 -44801694 + AluSg/x SINE Alu 106 304 -6 827 187 24 57 chr9 73061040 73061249 -44801378 + L1M4 LINE L1 4134 4335 -1811 565 72 0 41 chr9 73061249 73061335 -44801292 + AluSg/x SINE Alu 218 301 -9 1985 72 0 45 chr9 73061335 73061626 -44801001 + AluY SINE Alu 33 310 -1 297 250 23 11 chr9 73061636 73061724 -44800903 - MER61E LTR ERV1 -140 429 341 255 191 0 131 chr9 73061830 73061914 -44800713 - MER61E LTR ERV1 -411 158 86 * 288 214 0 18 chr9 73061896 73061952 -44800675 - LTR25 LTR ERV1 -442 352 298 1153 138 32 23 chr9 73062104 73062321 -44800306 + MER20 DNA MER1_type 1 219 0 25 0 0 0 chr9 73062361 73062386 -44800241 + AT_rich Low_complexity Low_complexity 1 25 0 347 197 219 22 chr9 73062485 73062622 -44800005 + L1ME3A LINE L1 5792 5955 -215 812 178 62 83 chr9 73062871 73062916 -44799711 + L1MD3 LINE L1 7759 7803 -192 2040 125 6 0 chr9 73062916 73063227 -44799400 - AluSp SINE Alu 0 313 1 812 178 62 83 chr9 73063227 73063423 -44799204 + L1MD3 LINE L1 7803 7995 0 2703 52 0 0 chr9 73063754 73064064 -44798563 + AluY SINE Alu 2 311 0 2133 136 0 7 chr9 73066393 73066701 -44795926 - AluSq SINE Alu -3 310 5 255 288 17 68 chr9 73066906 73067024 -44795603 + L2 LINE L2 2698 2809 -505 441 237 0 53 chr9 73067043 73067174 -44795453 + MER58B DNA MER1_type 194 317 -24 311 313 0 20 chr9 73067240 73067339 -44795288 - HERV16 LTR ERVL -3554 1442 1346 816 248 136 19 chr9 73067626 73067936 -44794691 - LTR48 LTR ERV1 -93 694 349 1049 123 0 50 chr9 73067936 73068115 -44794512 - LTR49 LTR ERV1 -425 170 1 190 234 0 47 chr9 73068349 73068413 -44794214 + MER5A DNA MER1_type 128 188 -1 684 104 31 0 chr9 73068551 73068647 -44793980 + FRAM SINE Alu 43 141 -35 653 177 26 23 chr9 73068669 73068922 -44793705 + LTR48B LTR ERV1 223 576 -68 1537 181 111 18 chr9 73069038 73069424 -44793203 + L1ME1 LINE L1 4617 5038 -1108 2330 68 0 4 chr9 73069424 73069757 -44792870 + AluY SINE Alu 2 333 0 325 278 50 50 chr9 73069774 73069893 -44792734 + MER34 LTR ERV1 1 119 -457 * 944 184 89 56 chr9 73069880 73069983 -44792644 + LTR48B LTR ERV1 137 235 -409 1499 185 39 8 chr9 73069983 73070242 -44792385 + AluJo SINE Alu 9 275 -37 944 184 89 56 chr9 73070242 73070585 -44792042 + LTR48B LTR ERV1 235 644 0 1321 155 19 95 chr9 73070585 73070712 -44791915 + L1ME1 LINE L1 5045 5180 -1006 1848 189 0 3 chr9 73070712 73071025 -44791602 + AluJb SINE Alu 1 312 0 1321 155 19 95 chr9 73071025 73071176 -44791451 + L1ME1 LINE L1 5180 5341 -845 315 0 0 0 chr9 73071176 73071211 -44791416 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2611 51 0 0 chr9 73071213 73071506 -44791121 - AluY SINE Alu -18 293 1 1321 155 19 95 chr9 73071506 73071648 -44790979 + L1ME1 LINE L1 5342 5442 -744 666 215 74 0 chr9 73071649 73071784 -44790843 + FRAM SINE Alu 1 145 -31 450 0 0 0 chr9 73071784 73071834 -44790793 + (CA)n Simple_repeat Simple_repeat 1 50 0 796 168 34 7 chr9 73071859 73072146 -44790481 - MER57A LTR ERV1 0 403 6 2031 226 37 34 chr9 73072147 73072740 -44789887 + L1ME1 LINE L1 5449 6043 -123 1221 184 51 19 chr9 73072747 73072987 -44789640 - LTR49 LTR ERV1 0 595 364 2205 98 0 70 chr9 73072987 73073314 -44789313 + AluSx SINE Alu 1 304 -8 1221 184 51 19 chr9 73073314 73073500 -44789127 - LTR49 LTR ERV1 -231 364 1 489 275 15 0 chr9 73073500 73073631 -44788996 + L1MA10 LINE L1 6202 6334 0 1802 177 12 76 chr9 73074603 73075026 -44787601 + MER57A LTR ERV1 8 403 0 187 184 0 0 chr9 73075114 73075152 -44787475 + L2 LINE L2 1675 1712 -1602 186 289 0 0 chr9 73075120 73075165 -44787462 + MIR3 SINE MIR 121 165 -43 * 804 241 85 64 chr9 73075175 73075614 -44787013 - MLT1C LTR MaLR 0 467 1 2374 113 0 0 chr9 73075944 73076255 -44786372 + AluSp SINE Alu 1 311 -2 516 214 76 0 chr9 73077077 73077208 -44785419 + LTR33 LTR ERVL 1 141 -380 439 272 28 50 chr9 73077354 73077534 -44785093 + LTR33 LTR ERVL 343 518 -3 319 336 64 8 chr9 73077534 73077659 -44784968 + MIR SINE MIR 125 256 -6 327 338 23 30 chr9 73077879 73078012 -44784615 - L2 LINE L2 -7 3265 3134 828 295 159 67 chr9 73078226 73079217 -44783410 - L2 LINE L2 -415 2899 1817 1209 91 0 0 chr9 73079234 73079388 -44783239 - AluSg/x SINE Alu -10 302 149 2420 67 0 42 chr9 73079394 73079706 -44782921 - AluY SINE Alu -12 299 1 251 255 83 51 chr9 73079748 73079964 -44782663 - L2 LINE L2 -1565 1749 1527 1548 164 4 40 chr9 73080096 73080310 -44782317 - AluJo SINE Alu -47 265 62 1225 194 99 60 chr9 73080310 73080743 -44781884 - LTR7 LTR ERV1 0 450 1 1548 164 4 40 chr9 73080743 73080803 -44781824 - AluJo SINE Alu -250 62 1 34 0 0 0 chr9 73081022 73081056 -44781571 + AT_rich Low_complexity Low_complexity 1 34 0 1899 83 4 24 chr9 73081163 73081415 -44781212 + AluSg SINE Alu 2 248 -62 700 321 21 16 chr9 73081792 73082035 -44780592 + MIR SINE MIR 19 262 0 414 318 80 0 chr9 73082050 73082201 -44780426 - MIR3 SINE MIR -15 193 31 490 305 90 5 chr9 73082220 73082420 -44780207 + MIR SINE MIR 2 218 -44 2597 66 0 0 chr9 73083539 73083844 -44778783 + AluY SINE Alu 1 305 -6 776 219 159 8 chr9 73083871 73084122 -44778505 - MER5C DNA MER1_type -1 323 35 2447 75 7 0 chr9 73084292 73084599 -44778028 - AluY SINE Alu -2 309 1 411 236 144 23 chr9 73084822 73084996 -44777631 + MLT1K LTR MaLR 233 427 -161 978 275 14 11 chr9 73085088 73085368 -44777259 + LTR16A LTR ERVL 60 340 -110 464 323 12 6 chr9 73085529 73085696 -44776931 + L3 LINE CR1 1142 1309 -268 * 674 288 169 30 chr9 73085679 73085779 -44776848 + L2 LINE L2 2624 2709 -604 2520 64 0 3 chr9 73085779 73086074 -44776553 - AluY SINE Alu -17 294 1 674 288 169 30 chr9 73086074 73086582 -44776045 + L2 LINE L2 2709 3313 0 255 311 9 38 chr9 73086700 73086806 -44775821 + MIR SINE MIR 8 110 -152 1130 89 0 0 chr9 73086810 73086945 -44775682 + AluSp SINE Alu 1 135 -178 2554 87 0 0 chr9 73086946 73087256 -44775371 + AluY SINE Alu 1 310 -1 294 297 58 22 chr9 73087271 73087409 -44775218 + MIR SINE MIR 117 259 -3 1657 194 7 7 chr9 73087505 73087815 -44774812 - AluJb SINE Alu -2 310 1 869 275 13 4 chr9 73088397 73088633 -44773994 - MIR SINE MIR -16 246 9 193 279 70 0 chr9 73088644 73088730 -44773897 + L3 LINE CR1 1398 1489 -88 434 364 40 0 chr9 73088740 73088965 -44773662 - MIR SINE MIR -16 246 13 224 241 190 0 chr9 73088959 73089038 -44773589 + L3 LINE CR1 1474 1567 -10 * 1927 99 12 0 chr9 73089146 73089399 -44773228 - AluSg SINE Alu -13 297 42 2409 92 0 16 chr9 73089405 73089721 -44772906 - AluSp SINE Alu -2 311 1 381 272 73 7 chr9 73089970 73090106 -44772521 + L2 LINE L2 1902 2046 -1268 1660 263 129 21 chr9 73090128 73091098 -44771529 + L2 LINE L2 2232 3309 -4 294 328 90 0 chr9 73091446 73091568 -44771059 + MIR SINE MIR 33 165 -97 323 273 189 0 chr9 73092976 73093108 -44769519 - MER5A DNA MER1_type -1 188 32 2408 73 0 58 chr9 73093251 73093581 -44769046 - AluSq SINE Alu -2 311 1 204 246 35 0 chr9 73094021 73094078 -44768549 + L2 LINE L2 3214 3272 0 196 296 68 11 chr9 73094328 73094416 -44768211 - MIR3 SINE MIR 0 208 116 919 237 32 29 chr9 73094772 73095050 -44767577 - MER41-int LTR ERV1 -3592 2354 2076 1022 45 37 0 chr9 73096116 73096250 -44766377 + MER85 DNA T2_type 1 139 0 314 259 17 17 chr9 73096415 73096531 -44766096 + GA-rich Low_complexity Low_complexity 2 117 0 1595 70 9 9 chr9 73097923 73098136 -44764491 + AluY SINE Alu 93 305 -6 776 219 159 8 chr9 73098163 73098414 -44764213 - MER5C DNA MER1_type -1 323 35 2329 88 7 3 chr9 73098584 73098892 -44763735 - AluY SINE Alu -2 309 1 1660 263 129 21 chr9 73100354 73101324 -44761303 - L2 LINE L2 -4 3309 2232 381 272 73 7 chr9 73101346 73101482 -44761145 - L2 LINE L2 -1268 2046 1902 2409 92 0 16 chr9 73101731 73102047 -44760580 + AluSp SINE Alu 1 311 -2 1927 99 12 0 chr9 73102053 73102306 -44760321 + AluSg SINE Alu 42 297 -13 224 241 190 0 chr9 73102414 73102493 -44760134 - L3 LINE CR1 -10 1567 1474 * 434 364 40 0 chr9 73102487 73102712 -44759915 + MIR SINE MIR 13 246 -16 193 279 70 0 chr9 73102722 73102808 -44759819 - L3 LINE CR1 -88 1489 1398 869 275 13 4 chr9 73102819 73103055 -44759572 + MIR SINE MIR 9 246 -16 1657 194 7 7 chr9 73103637 73103947 -44758680 + AluJb SINE Alu 1 310 -2 294 297 58 22 chr9 73104043 73104181 -44758446 - MIR SINE MIR -3 259 117 2554 87 0 0 chr9 73104196 73104506 -44758121 - AluY SINE Alu -1 310 1 1077 111 0 0 chr9 73104507 73104642 -44757985 - AluSp SINE Alu -178 135 1 2390 62 7 0 chr9 73105608 73105899 -44756728 - AluY SINE Alu -18 293 1 2309 121 0 0 chr9 73106735 73107041 -44755586 - AluSq SINE Alu -7 306 1 2476 72 0 10 chr9 73107053 73107358 -44755269 - AluY SINE Alu -9 302 1 690 273 55 44 chr9 73107398 73107691 -44754936 + L2 LINE L2 3016 3311 -2 2317 110 7 0 chr9 73108128 73108438 -44754189 + AluSx SINE Alu 1 312 0 2562 72 0 0 chr9 73108740 73109044 -44753583 - AluY SINE Alu -7 304 1 26 0 0 0 chr9 73109047 73109073 -44753554 + AT_rich Low_complexity Low_complexity 1 26 0 2492 70 7 0 chr9 73109091 73109389 -44753238 - AluY SINE Alu -11 300 1 2496 75 0 0 chr9 73109403 73109734 -44752893 - L1PA7 LINE L1 -8 6146 5816 2178 87 0 14 chr9 73110419 73110706 -44751921 - AluSq SINE Alu -3 310 28 235 366 12 0 chr9 73111054 73111136 -44751491 + L3 LINE CR1 1104 1186 -391 2162 115 10 10 chr9 73111355 73111667 -44750960 + AluJo SINE Alu 1 312 0 2525 55 3 13 chr9 73111668 73111977 -44750650 + AluY SINE Alu 1 306 -5 307 198 0 31 chr9 73111980 73112076 -44750551 + GA-rich Low_complexity Low_complexity 3 95 0 2014 99 0 0 chr9 73112087 73112349 -44750278 - AluY SINE Alu -49 262 1 734 248 61 0 chr9 73112652 73112850 -44749777 + MER63A DNA MER1_type 1 210 0 1744 133 28 77 chr9 73112928 73113251 -44749376 - AluJo SINE Alu -5 307 1 1019 286 72 13 chr9 73114214 73114532 -44748095 + MER58B DNA MER1_type 5 341 0 459 122 33 0 chr9 73114637 73114727 -44747900 + GA-rich Low_complexity Low_complexity 1 93 0 351 273 38 93 chr9 73115072 73115188 -44747439 - MER5A DNA MER1_type -5 184 80 1464 171 40 40 chr9 73115188 73115487 -44747140 - AluJb SINE Alu -13 299 1 351 273 38 93 chr9 73115487 73115553 -44747074 - MER5A DNA MER1_type -109 80 12 2516 66 0 0 chr9 73115796 73116100 -44746527 + AluY SINE Alu 1 304 -7 327 302 79 16 chr9 73116209 73116335 -44746292 - MER112 DNA MER1_type -109 151 18 239 172 50 40 chr9 73117725 73117824 -44744803 + (TATAA)n Simple_repeat Simple_repeat 5 104 0 991 262 96 76 chr9 73117970 73118577 -44744050 - L1ME3 LINE L1 -131 6033 5439 1686 195 0 0 chr9 73118577 73118889 -44743738 - AluSx SINE Alu 0 312 1 991 262 96 76 chr9 73118889 73119016 -44743611 - L1ME3 LINE L1 -725 5439 5316 1739 172 24 3 chr9 73119016 73119306 -44743321 - AluJb SINE Alu -16 296 1 991 262 96 76 chr9 73119306 73119455 -44743172 - L1ME3 LINE L1 -848 5316 5115 1915 118 14 18 chr9 73119606 73119886 -44742741 + AluY SINE Alu 1 279 -32 2017 116 0 21 chr9 73120546 73120830 -44741797 + AluSq SINE Alu 1 278 -35 1996 105 48 3 chr9 73120830 73121125 -44741502 + AluSp SINE Alu 1 308 -5 1351 176 137 16 chr9 73121323 73121629 -44740998 - MER31A LTR ERV1 0 485 143 599 187 82 0 chr9 73121625 73121759 -44740868 - MER63 DNA MER1_type -55 1007 863 * 831 168 50 24 chr9 73121754 73121928 -44740699 - MER31A LTR ERV1 -271 195 2 240 200 0 0 chr9 73121935 73121980 -44740647 + MER63 DNA MER1_type 678 722 -339 864 218 58 0 chr9 73122044 73122232 -44740395 + MER63 DNA MER1_type 862 1060 0 2063 128 0 0 chr9 73122522 73122810 -44739817 + AluSx SINE Alu 1 288 -24 3574 111 2 9 chr9 73123374 73123388 -44739239 - L1P LINE L1 -1162 4984 4971 7313 52 71 0 chr9 73123388 73124348 -44738279 - L1PA7 LINE L1 -16 6138 5163 3574 111 2 9 chr9 73124348 73124865 -44737762 - L1P LINE L1 -1175 4971 4457 355 263 0 40 chr9 73124993 73125092 -44737535 - MLT1D LTR MaLR -149 356 262 3470 80 20 0 chr9 73125097 73125546 -44737081 - L1PA10 LINE L1 -1 6167 5710 25 31 0 0 chr9 73125553 73125585 -44737042 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr9 73125747 73125771 -44736856 + AT_rich Low_complexity Low_complexity 1 24 0 2780 20 0 0 chr9 73125917 73126220 -44736407 + AluYa5 SINE Alu 1 303 -8 474 236 85 0 chr9 73126429 73126535 -44736092 + MIR SINE MIR 75 189 -73 767 191 15 0 chr9 73126553 73126684 -44735943 + AluJo SINE Alu 2 134 -178 975 166 13 0 chr9 73126698 73126855 -44735772 - FRAM SINE Alu -24 152 1 1721 202 0 0 chr9 73126865 73127172 -44735455 - AluJo SINE Alu -5 307 1 21 100 0 0 chr9 73127252 73127322 -44735305 + AT_rich Low_complexity Low_complexity 1 70 0 1565 174 73 31 chr9 73127781 73127898 -44734729 - MLT2D LTR ERVL 0 464 353 1842 165 3 13 chr9 73127898 73128213 -44734414 - AluJb SINE Alu 0 312 1 1565 174 73 31 chr9 73128213 73128524 -44734103 - MLT2D LTR ERVL -111 353 35 1623 106 0 5 chr9 73128671 73128889 -44733738 - AluSq SINE Alu -11 302 86 411 70 0 0 chr9 73128958 73129015 -44733612 + MLT2D LTR ERVL 366 414 0 519 153 0 0 chr9 73129093 73129165 -44733462 - AluS SINE Alu -239 73 2 3144 193 54 3 chr9 73129166 73129809 -44732818 + L1 LINE L1 3197 3872 -2274 991 262 96 76 chr9 73130076 73130683 -44731944 - L1ME3 LINE L1 -131 6033 5439 1727 188 0 0 chr9 73130683 73130990 -44731637 - AluSx SINE Alu 0 307 1 991 262 96 76 chr9 73130990 73131117 -44731510 - L1ME3 LINE L1 -725 5439 5316 1763 169 24 3 chr9 73131117 73131407 -44731220 - AluJb SINE Alu -16 296 1 991 262 96 76 chr9 73131407 73131556 -44731071 - L1ME3 LINE L1 -848 5316 5115 1890 122 14 14 chr9 73131707 73131986 -44730641 + AluY SINE Alu 1 279 -32 2047 105 0 21 chr9 73132646 73132931 -44729696 + AluSq SINE Alu 1 279 -34 2157 107 0 3 chr9 73132931 73133219 -44729408 + AluSx SINE Alu 1 288 -24 1829 160 0 3 chr9 73133474 73133761 -44728866 - AluSx SINE Alu -26 286 1 244 194 48 29 chr9 73133812 73133915 -44728712 + (TATAA)n Simple_repeat Simple_repeat 5 109 0 357 238 12 0 chr9 73134404 73134484 -44728143 - HsTC2 DNA Tc2 -1341 557 477 2090 204 53 75 chr9 73134759 73135325 -44727302 + L1MB8 LINE L1 5555 6107 -71 1422 222 0 13 chr9 73135325 73135636 -44726991 - AluJb SINE Alu -5 307 1 2090 204 53 75 chr9 73135636 73135707 -44726920 + L1MB8 LINE L1 6107 6178 0 1837 149 0 36 chr9 73135729 73136037 -44726590 + AluJo SINE Alu 11 307 -5 332 178 28 93 chr9 73136537 73136644 -44725983 - LTR37A LTR ERV1 -86 340 241 1211 249 7 30 chr9 73136802 73137099 -44725528 - AluJo SINE Alu -10 292 3 24 0 0 0 chr9 73137099 73137123 -44725504 + AT_rich Low_complexity Low_complexity 1 24 0 813 186 0 0 chr9 73137123 73137247 -44725380 - FLAM_C SINE Alu -9 124 1 1148 265 95 19 chr9 73137337 73137861 -44724766 + L2 LINE L2 2541 3097 -216 1500 217 10 0 chr9 73137865 73138165 -44724462 - AluJo SINE Alu -9 303 1 1519 186 22 58 chr9 73138174 73138535 -44724092 - MLT1D LTR MaLR -8 497 150 639 189 31 16 chr9 73138538 73138685 -44723942 + FLAM_C SINE Alu 9 143 0 1356 210 3 65 chr9 73138687 73139011 -44723616 + AluJo SINE Alu 1 304 -8 2229 251 81 52 chr9 73139105 73139503 -44723124 + MER21B LTR ERV1 19 404 -459 1780 169 16 16 chr9 73139503 73139811 -44722816 - AluJb SINE Alu 0 312 5 2229 251 81 52 chr9 73139811 73139889 -44722738 + MER21B LTR ERV1 404 478 -385 1773 178 3 3 chr9 73139889 73140182 -44722445 + AluJo SINE Alu 6 298 -14 2229 251 81 52 chr9 73140182 73140470 -44722157 + MER21B LTR ERV1 478 806 -57 2110 119 3 3 chr9 73141025 73141327 -44721300 + AluSx SINE Alu 1 302 -10 1847 147 3 26 chr9 73141474 73141781 -44720846 - AluSg SINE Alu -10 300 1 1282 182 53 92 chr9 73141942 73142299 -44720328 + L1M3 LINE L1 5480 5822 -361 595 216 0 0 chr9 73142307 73142409 -44720218 + FLAM_C SINE Alu 2 103 -40 2059 100 24 3 chr9 73143000 73143290 -44719337 + AluSc SINE Alu 1 296 -13 200 35 35 0 chr9 73143344 73143373 -44719254 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1361 122 10 10 chr9 73143528 73143733 -44718894 + AluSq SINE Alu 1 205 -108 2275 71 43 0 chr9 73144090 73144372 -44718255 - AluY SINE Alu -17 294 1 2446 258 51 18 chr9 73144690 73145507 -44717120 - L1M4 LINE L1 -775 5371 4528 7765 50 4 0 chr9 73145528 73147051 -44715576 - L1PA5 LINE L1 0 6154 4628 1538 219 22 56 chr9 73147051 73147498 -44715129 - L1M4 LINE L1 -2046 4100 3669 2152 81 3 7 chr9 73147587 73147891 -44714736 + AluY SINE Alu 1 303 0 2290 78 0 27 chr9 73147964 73148260 -44714367 + AluY SINE Alu 1 288 -23 21 0 0 31 chr9 73148311 73148328 -44714299 + AT_rich Low_complexity Low_complexity 1 18 -13 1930 170 0 0 chr9 73148328 73148622 -44714005 + AluJb SINE Alu 1 294 -18 21 0 0 31 chr9 73148622 73148636 -44713991 + AT_rich Low_complexity Low_complexity 18 31 0 1683 242 51 11 chr9 73148753 73149299 -44713328 - L1M4 LINE L1 -3212 2934 2367 1470 208 75 62 chr9 73149311 73149701 -44712926 - L1M4 LINE L1 -2449 3697 3298 777 115 0 0 chr9 73149701 73149814 -44712813 - L1MA1 LINE L1 0 6302 6190 1470 208 75 62 chr9 73149814 73149919 -44712708 - L1M4 LINE L1 -2848 3298 3196 2549 58 0 0 chr9 73149920 73150215 -44712412 + AluY SINE Alu 1 295 -16 5924 167 40 62 chr9 73150241 73150938 -44711689 + L1MA7 LINE L1 3980 4691 -1600 6535 40 9 45 chr9 73150938 73151746 -44710881 + L1PA5 LINE L1 5374 6152 -2 5924 167 40 62 chr9 73151746 73152592 -44710035 + L1MA7 LINE L1 4691 5464 -827 818 113 0 0 chr9 73152592 73152698 -44709929 + U6 snRNA snRNA 1 106 -1 5924 167 40 62 chr9 73152698 73153015 -44709612 + L1MA7 LINE L1 5464 5787 -504 1980 179 74 3 chr9 73153015 73153394 -44709233 + Tigger2a DNA MER2_type 1 406 -28 1246 176 78 39 chr9 73153397 73153703 -44708924 + L1MA7 LINE L1 5790 6107 -184 1111 55 0 0 chr9 73153704 73153832 -44708795 + AluY SINE Alu 1 128 -183 680 176 119 0 chr9 73153832 73154008 -44708619 + L1MA7 LINE L1 6095 6291 0 23 0 0 0 chr9 73154172 73154195 -44708432 + AT_rich Low_complexity Low_complexity 1 23 0 23 68 0 0 chr9 73154445 73154489 -44708138 + AT_rich Low_complexity Low_complexity 1 44 0 1044 214 0 0 chr9 73154912 73155085 -44707542 - FAM SINE Alu -2 173 1 318 180 0 0 chr9 73155099 73155160 -44707467 + T-rich Low_complexity Low_complexity 5 65 0 1609 181 3 23 chr9 73155169 73155472 -44707155 - AluJb SINE Alu -15 297 1 225 0 0 0 chr9 73156801 73156826 -44705801 + (T)n Simple_repeat Simple_repeat 1 25 0 294 239 45 0 chr9 73157029 73157096 -44705531 + L3 LINE CR1 1385 1454 -123 1701 160 34 7 chr9 73157913 73158207 -44704420 - AluJb SINE Alu -10 302 1 3904 51 60 4 chr9 73158271 73158757 -44703870 - LTR10D LTR ERV1 0 513 1 690 133 0 0 chr9 73158782 73158872 -44703755 - AluJ/FLAM SINE Alu -221 91 2 1415 197 10 30 chr9 73159110 73159414 -44703213 - AluJo SINE Alu -14 298 1 205 179 196 0 chr9 73159415 73159471 -44703156 - L2 LINE L2 -1407 1907 1841 685 59 0 12 chr9 73159477 73159562 -44703065 - PABL_A LTR ERV1 0 660 577 * 1917 97 12 0 chr9 73159559 73159817 -44702810 - PABL_A LTR ERV1 -399 261 1 222 360 92 29 chr9 73159844 73160116 -44702511 - L2 LINE L2 -1683 1631 1343 374 295 137 26 chr9 73160340 73160567 -44702060 + L2 LINE L2 2396 2647 -667 894 183 24 194 chr9 73160676 73160857 -44701770 + L1MC/D LINE L1 4826 4936 -1210 239 204 0 0 chr9 73160857 73160901 -44701726 + MER72 LTR ERV1 586 629 -93 894 183 24 194 chr9 73160901 73161130 -44701497 + L1MC/D LINE L1 4936 5202 -944 756 161 0 17 chr9 73161185 73161303 -44701324 + FLAM_A SINE Alu 21 136 -6 916 185 26 5 chr9 73161306 73161535 -44701092 + L1MC/D LINE L1 5199 5433 -745 2118 118 0 3 chr9 73161764 73162053 -44700574 - AluSx SINE Alu -24 288 1 2183 105 3 0 chr9 73166186 73166471 -44696156 - AluSx SINE Alu -26 286 1 587 247 26 0 chr9 73167909 73168063 -44694564 - MIR SINE MIR -67 195 38 2456 93 0 0 chr9 73168324 73168634 -44693993 - AluSg SINE Alu 0 310 1 2522 52 7 13 chr9 73169235 73169544 -44693083 + AluY SINE Alu 5 311 0 255 176 68 81 chr9 73169546 73169620 -44693007 + MLT1I LTR MaLR 84 156 -349 360 204 14 102 chr9 73169652 73169799 -44692828 + MLT1I LTR MaLR 272 405 -4 203 246 46 0 chr9 73169813 73169878 -44692749 + MIR SINE MIR 94 161 -101 230 264 42 0 chr9 73169881 73169953 -44692674 - MLT1K LTR MaLR -5 583 509 2125 133 3 0 chr9 73170987 73171289 -44691338 + AluSx SINE Alu 1 303 -9 3204 186 37 21 chr9 73171305 73171973 -44690654 + L1MB3 LINE L1 5363 6041 -142 886 276 77 26 chr9 73171996 73172249 -44690378 - L1ME1 LINE L1 -99 6067 5786 2201 54 58 14 chr9 73172249 73172526 -44690101 + AluY SINE Alu 1 289 -22 886 276 77 26 chr9 73172526 73172663 -44689964 - L1ME1 LINE L1 -380 5786 5657 2324 68 31 10 chr9 73172693 73172985 -44689642 - AluY SINE Alu -13 298 1 2300 117 0 0 chr9 73173725 73174034 -44688593 - AluY SINE Alu -2 309 1 2155 128 3 3 chr9 73174098 73174396 -44688231 - AluSx SINE Alu -14 298 1 1819 162 31 0 chr9 73174513 73174803 -44687824 - AluSx SINE Alu -13 299 1 312 325 42 39 chr9 73174894 73175180 -44687447 - L2 LINE L2 -75 3238 2952 216 318 59 0 chr9 73175261 73175346 -44687281 - L2 LINE L2 -540 2774 2685 366 156 0 0 chr9 73175851 73175915 -44686712 + FRAM SINE Alu 32 95 -71 796 191 68 0 chr9 73176522 73176684 -44685943 + AluJo SINE Alu 121 293 -19 473 229 14 129 chr9 73176806 73177016 -44685611 - AluJb SINE Alu -70 242 57 1523 148 4 0 chr9 73177056 73177286 -44685341 - AluJo SINE Alu -81 231 1 313 87 0 0 chr9 73177566 73177612 -44685015 + Alu SINE Alu 1 46 -254 318 26 0 0 chr9 73177685 73177724 -44684903 + (CA)n Simple_repeat Simple_repeat 2 40 0 363 268 0 0 chr9 73178243 73178325 -44684302 - MLT1D LTR MaLR -149 356 275 3199 93 2 30 chr9 73178337 73178606 -44684021 - L1PA10 LINE L1 0 6168 5916 2986 6 0 0 chr9 73178606 73178921 -44683706 + AluYb8 SINE Alu 1 315 -3 3199 93 2 30 chr9 73178921 73179123 -44683504 - L1PA10 LINE L1 -252 5916 5710 31 0 0 0 chr9 73179130 73179161 -44683466 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr9 73179329 73179353 -44683274 + AT_rich Low_complexity Low_complexity 1 24 0 2933 10 0 0 chr9 73179499 73179810 -44682817 + AluYa5 SINE Alu 1 311 0 799 273 98 49 chr9 73179926 73180582 -44682045 + L1MDa LINE L1 1964 2651 -4070 2268 94 0 19 chr9 73180582 73180890 -44681737 + AluSx SINE Alu 1 302 -10 23 68 0 0 chr9 73181252 73181296 -44681331 + AT_rich Low_complexity Low_complexity 1 44 0 738 194 61 12 chr9 73182024 73182189 -44680438 + MER3 DNA MER1_type 32 204 -5 262 271 17 0 chr9 73182557 73182616 -44680011 + MER58B DNA MER1_type 3 62 -279 913 179 81 0 chr9 73182618 73182791 -44679836 - AluJo SINE Alu -18 294 108 465 202 153 8 chr9 73182795 73182919 -44679708 + MER58B DNA MER1_type 185 326 -15 203 0 37 0 chr9 73183206 73183233 -44679394 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1821 136 7 27 chr9 73183238 73183532 -44679095 - AluY SINE Alu -23 288 1 328 288 126 0 chr9 73183566 73183677 -44678950 - MER5B DNA MER1_type -52 126 2 1665 156 35 7 chr9 73183877 73184160 -44678467 - AluJb SINE Alu -21 291 1 918 207 35 0 chr9 73184207 73184381 -44678246 + L1MDb LINE L1 19 198 -6342 396 188 62 9 chr9 73184377 73184489 -44678138 + L1MDa LINE L1 2951 3068 -3472 * 1560 167 30 4 chr9 73187883 73188153 -44674474 + AluJb SINE Alu 3 279 -33 271 266 0 46 chr9 73188156 73188265 -44674362 + GA-rich Low_complexity Low_complexity 1 104 0 861 138 23 0 chr9 73189628 73189758 -44672869 + AluJ SINE Alu 1 133 -169 798 199 16 43 chr9 73189793 73189979 -44672648 + AluJ SINE Alu 120 300 -12 1344 174 0 49 chr9 73191213 73191518 -44671109 - AluSx SINE Alu -22 290 1 290 197 49 16 chr9 73191518 73191579 -44671048 + LTR52-int LTR ERVL 3178 3240 -316 2993 249 115 46 chr9 73191579 73192576 -44670051 + L1MDb LINE L1 280 1207 -5333 2253 100 0 20 chr9 73192576 73192876 -44669751 + AluSc SINE Alu 2 295 -14 2993 249 115 46 chr9 73192876 73193755 -44668872 + L1MDb LINE L1 1207 2024 -4516 1015 253 119 32 chr9 73193755 73194217 -44668410 + MLT1D LTR MaLR 1 502 -3 2993 249 115 46 chr9 73194217 73194509 -44668118 + L1MDb LINE L1 2024 2295 -4245 2115 135 0 0 chr9 73194509 73194798 -44667829 + AluSg SINE Alu 1 289 -21 2993 249 115 46 chr9 73194798 73196009 -44666618 + L1MDb LINE L1 2295 3892 -2648 3445 84 55 12 chr9 73196018 73196532 -44666095 - Tigger1 DNA MER2_type -341 2077 1542 2418 69 30 10 chr9 73196533 73196836 -44665791 - AluY SINE Alu -2 309 1 2300 117 0 0 chr9 73197576 73197885 -44664742 - AluY SINE Alu -2 309 1 195 212 0 91 chr9 73197924 73197949 -44664678 - MIR3 SINE MIR -39 169 143 2052 125 10 7 chr9 73197949 73198246 -44664381 - AluJb SINE Alu -14 298 1 195 212 0 91 chr9 73198246 73198286 -44664341 - MIR3 SINE MIR -65 143 110 27 29 0 0 chr9 73199034 73199068 -44663559 + AT_rich Low_complexity Low_complexity 1 34 0 257 307 130 25 chr9 73199383 73199621 -44663006 + MLT1L LTR MaLR 353 615 0 2733 45 0 0 chr9 73199731 73200039 -44662588 + AluY SINE Alu 1 308 -3 369 341 17 17 chr9 73200095 73200268 -44662359 - MIR SINE MIR -79 183 11 2528 60 3 0 chr9 73201687 73201986 -44660641 - AluY SINE Alu -11 300 1 1634 175 21 11 chr9 73203251 73203531 -44659096 + AluJo SINE Alu 13 295 -17 314 296 61 8 chr9 73203555 73203687 -44658940 + MER91A DNA MER1_type 35 173 -23 210 88 88 0 chr9 73204088 73204156 -44658471 + (TA)n Simple_repeat Simple_repeat 1 74 0 27 49 0 0 chr9 73204159 73204200 -44658427 + AT_rich Low_complexity Low_complexity 1 41 0 2562 68 0 10 chr9 73204746 73205054 -44657573 - AluY SINE Alu -6 305 1 195 100 0 0 chr9 73205126 73205156 -44657471 + (CA)n Simple_repeat Simple_repeat 1 30 0 2619 52 3 0 chr9 73205420 73205725 -44656902 + AluY SINE Alu 2 307 -4 2557 179 38 11 chr9 73207131 73207684 -44654943 + L1P LINE L1 2234 2801 -3345 3561 120 6 7 chr9 73207684 73208221 -44654406 + L1PA13 LINE L1 5617 6163 0 1529 139 0 0 chr9 73208221 73208476 -44654151 + L1MA5A LINE L1 6032 6297 0 2193 98 20 3 chr9 73208481 73208776 -44653851 + AluSx SINE Alu 1 300 -12 377 44 59 0 chr9 73209112 73209180 -44653447 + (TAGA)n Simple_repeat Simple_repeat 4 75 0 186 118 0 0 chr9 73209184 73209218 -44653409 + (GGGA)n Simple_repeat Simple_repeat 3 36 0 2567 122 54 23 chr9 73209342 73209568 -44653059 + HSMAR2 DNA Mariner 846 1063 -239 3762 96 18 0 chr9 73209568 73210070 -44652557 + MER9 LTR ERVK 1 511 0 2567 122 54 23 chr9 73210070 73210285 -44652342 + HSMAR2 DNA Mariner 1063 1301 -1 2521 70 0 0 chr9 73211236 73211534 -44651093 + AluY SINE Alu 1 298 -13 782 253 141 10 chr9 73212116 73212428 -44650199 + MER90 LTR ERV1 248 600 -14 671 230 112 5 chr9 73213691 73213887 -44648740 + MIR SINE MIR 3 219 -43 303 303 37 9 chr9 73214205 73214314 -44648313 + L2 LINE L2 3189 3300 -13 270 303 0 0 chr9 73215977 73216066 -44646561 + L2 LINE L2 3136 3224 -48 268 228 18 0 chr9 73216092 73216149 -44646478 + (CA)n Simple_repeat Simple_repeat 1 58 0 1510 220 61 48 chr9 73216153 73216648 -44645979 - L1M4 LINE L1 -1682 4464 3964 1354 156 32 28 chr9 73216656 73216906 -44645721 - AluJo SINE Alu -16 296 46 1927 230 68 10 chr9 73216907 73217512 -44645115 - L1M4 LINE L1 -2178 3968 3329 619 268 119 28 chr9 73217576 73217938 -44644689 - L1MC/D LINE L1 -2159 5649 5255 2043 237 51 63 chr9 73218479 73219238 -44643389 - L1ME3 LINE L1 -2 6160 5411 3503 130 53 10 chr9 73219239 73219823 -44642804 + LTR38B LTR ERV1 2 610 0 3189 162 21 65 chr9 73220432 73221051 -44641576 + LOR1-int LTR ERV1 1349 1940 -2345 * 4078 181 45 48 chr9 73220968 73221955 -44640672 + LTR57-int LTR ERVL 608 1591 -3752 3958 156 54 68 chr9 73221178 73222162 -44640465 + LOR1-int LTR ERV1 786 1755 -6365 * 2301 79 7 0 chr9 73222163 73222467 -44640160 + AluY SINE Alu 1 306 -5 1015 173 0 0 chr9 73222476 73222638 -44639989 + FRAM SINE Alu 1 159 -17 814 232 13 9 chr9 73222639 73222863 -44639764 + L1M4b LINE L1 1333 1557 -5302 869 143 8 8 chr9 73222863 73222996 -44639631 + FLAM_C SINE Alu 1 133 0 22 0 0 0 chr9 73223137 73223159 -44639468 + GC_rich Low_complexity Low_complexity 1 22 0 1664 109 0 4 chr9 73223246 73223484 -44639143 + AluSc SINE Alu 68 304 -5 324 306 64 23 chr9 73224142 73224315 -44638312 + MIR SINE MIR 66 245 -17 3939 143 94 91 chr9 73224379 73225573 -44637054 + pTR5 LTR ERV1 281 716 -64 257 224 0 35 chr9 73226348 73226406 -44636221 - MER5B DNA MER1_type 0 178 123 318 285 126 42 chr9 73226920 73227134 -44635493 - L2 LINE L2 -169 3144 2913 283 217 29 0 chr9 73227277 73227346 -44635281 - L2 LINE L2 -610 2704 2634 1595 159 0 8 chr9 73227396 73227660 -44634967 - AluJb SINE Alu -35 277 16 2395 67 0 10 chr9 73227864 73228177 -44634450 + AluY SINE Alu 1 310 -1 188 296 0 0 chr9 73229396 73229440 -44633187 - L2 LINE L2 -19 3253 3210 2058 87 3 28 chr9 73229598 73229922 -44632705 - AluSx SINE Alu 0 317 1 785 115 98 0 chr9 73229986 73230108 -44632519 + AluJo SINE Alu 5 138 -174 1491 184 48 0 chr9 73230110 73230403 -44632224 + AluJo SINE Alu 6 312 0 211 289 19 107 chr9 73230555 73230714 -44631913 + L2 LINE L2 3169 3313 0 684 233 56 56 chr9 73231749 73231981 -44630646 - MLT1E2 LTR MaLR -391 235 4 1935 105 10 27 chr9 73232110 73232406 -44630221 + AluSx SINE Alu 2 292 -20 2305 89 3 3 chr9 73232861 73233165 -44629462 + AluSq SINE Alu 1 304 -9 2388 63 0 3 chr9 73233168 73233468 -44629159 + AluY SINE Alu 1 299 -12 857 179 32 0 chr9 73233468 73233624 -44629003 + AluSg/x SINE Alu 134 294 -18 348 24 0 0 chr9 73233628 73233669 -44628958 + (CA)n Simple_repeat Simple_repeat 2 42 0 1673 169 82 23 chr9 73233669 73234324 -44628303 - MER49 LTR ERV1 -191 732 1 1597 177 19 9 chr9 73234324 73234681 -44627946 - MER49-int LTR ERV1 0 7097 6384 525 211 19 0 chr9 73234727 73234831 -44627796 - MER4-int LTR ERV1 -4065 4055 3950 777 189 0 92 chr9 73235025 73235210 -44627417 - MER4-int LTR ERV1 -4167 3953 3786 2170 231 88 36 chr9 73235337 73235491 -44627136 - MER4-int LTR ERV1 -2127 4008 3863 1777 146 49 0 chr9 73235491 73235779 -44626848 + AluSx SINE Alu 1 302 -10 2170 231 88 36 chr9 73235779 73236586 -44626041 - MER4-int LTR ERV1 -2272 3863 2477 2183 101 0 10 chr9 73236587 73236895 -44625732 - AluY SINE Alu -6 305 1 7005 104 39 9 chr9 73236895 73237777 -44624850 - Tigger1 DNA MER2_type -868 1550 630 1966 146 3 0 chr9 73237777 73238086 -44624541 - AluSx SINE Alu -2 310 1 7005 104 39 9 chr9 73238086 73238247 -44624380 - Tigger1 DNA MER2_type -1788 630 475 929 27 0 9 chr9 73238251 73238363 -44624264 - L1PA4 LINE L1 -7 6148 6038 1097 128 15 5 chr9 73238464 73238660 -44623967 + AluY SINE Alu 112 309 -2 383 61 0 0 chr9 73239104 73239153 -44623474 + AluSq/x SINE Alu 88 136 -166 1932 132 34 0 chr9 73239153 73239449 -44623178 + AluSx SINE Alu 1 306 -6 420 229 46 18 chr9 73239573 73239682 -44622945 + MIR3 SINE MIR 94 205 -3 229 282 74 81 chr9 73240099 73240492 -44622135 + L1ME4a LINE L1 5715 6104 -17 1799 159 7 0 chr9 73240536 73240837 -44621790 + AluJb SINE Alu 1 303 -9 2126 107 3 3 chr9 73241030 73241328 -44621299 - AluSx SINE Alu -14 298 1 1865 133 27 7 chr9 73241738 73242031 -44620596 - AluSq SINE Alu -14 299 1 920 231 52 66 chr9 73242219 73242714 -44619913 + L1 LINE L1 3966 4464 -1682 203 311 0 16 chr9 73242714 73242775 -44619852 + (TG)n Simple_repeat Simple_repeat 1 60 0 295 327 44 26 chr9 73244549 73244662 -44617965 - L2 LINE L2 -10 3303 3189 747 226 116 5 chr9 73244982 73245172 -44617455 - MIR SINE MIR -43 219 9 846 205 98 52 chr9 73245372 73245522 -44617105 - L1M4 LINE L1 -3269 2877 2735 1760 149 16 7 chr9 73245522 73245830 -44616797 - AluSx SINE Alu -1 311 1 846 205 98 52 chr9 73245830 73245986 -44616641 - L1M4 LINE L1 -3411 2735 2557 * 876 218 35 0 chr9 73245982 73246156 -44616471 - L1MDa LINE L1 -6342 198 19 1371 184 35 7 chr9 73246203 73246486 -44616141 + AluJb SINE Alu 1 291 -21 370 288 126 0 chr9 73246686 73246797 -44615830 + MER5B DNA MER1_type 2 126 -52 2372 70 3 0 chr9 73246831 73247130 -44615497 + AluY SINE Alu 1 300 -11 3202 193 32 63 chr9 73248004 73248901 -44613726 + L1 LINE L1 4453 5321 -825 200 254 42 0 chr9 73249560 73249631 -44612996 + CT-rich Low_complexity Low_complexity 3 76 0 192 111 0 0 chr9 73250275 73250311 -44612316 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 599 234 88 79 chr9 73250820 73251478 -44611149 + HSREP522 Satellite telomeric 1 663 -328 314 259 17 17 chr9 73252684 73252800 -44609827 + CT-rich Low_complexity Low_complexity 2 117 0 1079 45 37 0 chr9 73252965 73253099 -44609528 - MER85 DNA T2_type 0 139 1 2797 0 0 0 chr9 73253460 73253767 -44608860 - AluYa5 SINE Alu -4 307 1 205 303 79 0 chr9 73254406 73254482 -44608145 + MIR SINE MIR 73 154 -108 1398 194 26 7 chr9 73254482 73254755 -44607872 + LOR1-int LTR ERV1 2077 2354 -3592 1004 159 47 22 chr9 73254754 73254986 -44607641 + LOR1-int LTR ERV1 1838 1989 -4907 * 2214 182 48 4 chr9 73254977 73255439 -44607188 + LOR1-int LTR ERV1 2740 3221 -2725 23 33 0 0 chr9 73255776 73255806 -44606821 + AT_rich Low_complexity Low_complexity 1 30 0 2404 196 22 27 chr9 73256346 73256948 -44605679 + L1MB8 LINE L1 4132 4730 -1416 441 188 31 0 chr9 73256948 73257044 -44605583 + L1P LINE L1 4856 4954 -1192 * 1819 215 82 42 chr9 73257043 73257615 -44605012 + L1MB8 LINE L1 5584 6178 0 2562 127 58 41 chr9 73257656 73258119 -44604508 - L1PB1 LINE L1 -3 6148 5678 1063 272 79 49 chr9 73258131 73258367 -44604260 - L1M4 LINE L1 -743 5403 5176 1856 145 3 0 chr9 73258367 73258656 -44603971 + AluSx SINE Alu 2 291 -21 1063 272 79 49 chr9 73258656 73259092 -44603535 - L1M4 LINE L1 -970 5176 4711 211 252 210 42 chr9 73259382 73259525 -44603102 - MIR3 SINE MIR -19 189 23 180 240 120 27 chr9 73259814 73259889 -44602738 - L2 LINE L2 -908 2406 2325 1376 165 129 62 chr9 73260233 73260652 -44601975 - LTR7 LTR ERV1 -2 448 2 2556 86 48 0 chr9 73260653 73261025 -44601602 - HERVH LTR ERV1 0 7713 7324 1492 106 18 5 chr9 73261025 73261242 -44601385 - HERVH LTR ERV1 -1894 5819 5600 4253 146 23 5 chr9 73261243 73261893 -44600734 - HERVH LTR ERV1 -2564 5149 4488 3389 113 4 4 chr9 73261895 73262384 -44600243 - HERVH LTR ERV1 -3720 3993 3505 867 138 41 0 chr9 73262388 73262533 -44600094 - HERVH LTR ERV1 -4423 3290 3140 * 20283 97 30 6 chr9 73262527 73265443 -44597184 - HERVH LTR ERV1 -4726 2987 1 1326 167 116 74 chr9 73265445 73265875 -44596752 - LTR7 LTR ERV1 -2 448 1 787 212 36 68 chr9 73266124 73266374 -44596253 + L1M4 LINE L1 4069 4310 -1836 891 160 28 0 chr9 73266530 73266674 -44595953 + Tigger1 DNA MER2_type 336 483 -1935 602 147 0 0 chr9 73266685 73266780 -44595847 + AluJb SINE Alu 208 302 -10 6234 134 25 30 chr9 73266786 73267862 -44594765 - MER11C LTR ERVK 0 1071 1 441 228 0 0 chr9 73267863 73267942 -44594685 - Tigger1 DNA MER2_type -2322 96 18 818 186 62 62 chr9 73267951 73268274 -44594353 - L1MC5 LINE L1 -132 7829 7507 2207 122 3 0 chr9 73268691 73268995 -44593632 - AluY SINE Alu -6 305 1 2058 127 0 3 chr9 73269032 73269337 -44593290 - AluSq SINE Alu 0 304 1 1394 176 43 43 chr9 73269380 73269682 -44592945 - AluJo SINE Alu -9 303 2 1292 189 24 39 chr9 73270198 73270531 -44592096 + L1 LINE L1 2179 2506 -3640 651 183 51 0 chr9 73270543 73270680 -44591947 + L1 LINE L1 2673 2816 -3330 859 69 0 0 chr9 73270687 73270789 -44591838 + AluY SINE Alu 1 102 -209 895 163 22 130 chr9 73270802 73271079 -44591548 + L1 LINE L1 2753 2999 -3147 * 8219 193 43 12 chr9 73271054 73272063 -44590564 + L1M1 LINE L1 3221 4197 -3368 2326 99 0 3 chr9 73272063 73272365 -44590262 + AluY SINE Alu 1 301 -10 8219 193 43 12 chr9 73272365 73273624 -44589003 + L1M1 LINE L1 4197 5567 -1998 372 207 106 65 chr9 73273635 73273852 -44588775 - HSREP522 Satellite telomeric -263 241 16 536 230 57 68 chr9 73274450 73274820 -44587807 + HSREP522 Satellite telomeric 2 367 -137 235 346 15 0 chr9 73275967 73276097 -44586530 + CT-rich Low_complexity Low_complexity 1 132 0 1844 156 10 10 chr9 73277248 73277543 -44585084 - AluSx SINE Alu -17 295 1 1004 201 129 5 chr9 73278227 73278599 -44584028 + LOR1a LTR ERV1 1 489 -8 185 167 0 0 chr9 73280583 73280613 -44582014 - L2 LINE L2 -16 3297 3268 207 276 51 10 chr9 73281239 73281337 -44581290 - MIR SINE MIR -61 201 100 2181 87 14 7 chr9 73281635 73281923 -44580704 - AluSc SINE Alu -19 290 1 245 241 90 83 chr9 73282516 73282649 -44579978 - L1MC4 LINE L1 -138 7904 7771 2418 119 45 13 chr9 73282926 73283314 -44579313 + MSTA LTR MaLR 30 426 -2 429 320 155 16 chr9 73284000 73284088 -44578539 + L1M4 LINE L1 3797 3871 -2275 2146 55 0 0 chr9 73284088 73284341 -44578286 + AluY SINE Alu 50 302 -9 429 320 155 16 chr9 73284341 73284640 -44577987 + L1M4 LINE L1 3871 4238 -1908 1947 116 53 0 chr9 73285185 73285469 -44577158 + AluSx SINE Alu 1 299 -13 2133 91 0 32 chr9 73286254 73286539 -44576088 + AluSq SINE Alu 1 276 -37 25 31 0 0 chr9 73286545 73286577 -44576050 + AT_rich Low_complexity Low_complexity 1 32 0 267 316 38 38 chr9 73287527 73287660 -44574967 + L2 LINE L2 3136 3268 -4 495 210 24 35 chr9 73287809 73287957 -44574670 - LTR9 LTR ERV1 0 612 490 330 331 75 19 chr9 73288068 73288228 -44574399 - MLT1K LTR MaLR -205 383 215 502 241 187 21 chr9 73288257 73288444 -44574183 - MER2 DNA MER2_type 0 345 128 236 292 21 0 chr9 73288444 73288540 -44574087 - L2 LINE L2 -1232 2082 1985 2168 127 13 0 chr9 73288541 73288848 -44573779 + AluSx SINE Alu 1 311 -1 949 181 0 30 chr9 73288850 73289016 -44573611 + AluJb SINE Alu 129 289 -23 302 215 0 0 chr9 73289018 73289097 -44573530 + L1ME LINE L1 2415 2493 -3653 845 197 0 0 chr9 73289214 73289346 -44573281 + FLAM_A SINE Alu 2 133 0 563 272 136 42 chr9 73289484 73289844 -44572783 + L1ME LINE L1 5269 5662 -459 1570 200 10 23 chr9 73290415 73290720 -44571907 - AluJb SINE Alu -11 301 1 2500 55 7 13 chr9 73291036 73291344 -44571283 + AluY SINE Alu 1 306 -5 921 132 22 0 chr9 73292130 73292266 -44570361 + FLAM_C SINE Alu 1 139 -4 979 156 16 42 chr9 73292295 73292487 -44570140 + AluJb SINE Alu 120 306 -6 2249 102 7 0 chr9 73292981 73293276 -44569351 + AluSg SINE Alu 1 297 -13 2337 104 0 0 chr9 73294197 73294496 -44568131 + AluSg SINE Alu 1 299 -11 220 102 61 0 chr9 73294881 73294930 -44567697 + (TA)n Simple_repeat Simple_repeat 2 53 0 339 254 0 73 chr9 73294931 73295041 -44567586 + L1MC4 LINE L1 6613 6714 -1328 2233 111 0 0 chr9 73295042 73295330 -44567297 - AluSx SINE Alu -24 288 1 24 67 0 0 chr9 73295814 73295859 -44566768 + AT_rich Low_complexity Low_complexity 1 45 0 295 252 50 88 chr9 73295913 73296072 -44566555 + L1MD2 LINE L1 6179 6331 -28 21 57 0 0 chr9 73296217 73296252 -44566375 + AT_rich Low_complexity Low_complexity 1 35 0 244 114 0 0 chr9 73296556 73296591 -44566036 + MER5B DNA MER1_type 1 35 -143 465 206 3 16 chr9 73296642 73296752 -44565875 + MER5B DNA MER1_type 69 166 -12 2243 108 0 3 chr9 73296856 73297151 -44565476 + AluSg SINE Alu 1 294 -16 192 208 117 65 chr9 73297242 73297319 -44565308 - MIR SINE MIR -103 105 25 4133 152 79 64 chr9 73297411 73298335 -44564292 - L1MB8 LINE L1 0 6178 5224 1895 172 0 3 chr9 73298715 73299012 -44563615 + AluSx SINE Alu 4 299 -13 25 31 0 0 chr9 73299509 73299541 -44563086 + AT_rich Low_complexity Low_complexity 1 32 0 3509 128 95 17 chr9 73299548 73300148 -44562479 + L1MC1 LINE L1 5687 6333 0 2353 106 0 0 chr9 73300165 73300467 -44562160 + AluSq SINE Alu 1 302 -11 181 377 53 0 chr9 73301486 73301600 -44561027 - MIR SINE MIR -15 247 128 224 204 56 0 chr9 73301966 73302020 -44560607 + GA-rich Low_complexity Low_complexity 4 60 0 2256 108 0 3 chr9 73303107 73303402 -44559225 + AluSg SINE Alu 1 294 -16 192 208 117 65 chr9 73303493 73303570 -44559057 - MIR SINE MIR -103 105 25 4050 155 79 66 chr9 73303662 73304587 -44558040 - L1MB8 LINE L1 0 6178 5224 314 259 17 17 chr9 73305489 73305605 -44557022 + CT-rich Low_complexity Low_complexity 2 117 0 1132 45 37 0 chr9 73305770 73305904 -44556723 - MER85 DNA T2_type 0 139 1 2733 13 0 19 chr9 73306265 73306578 -44556049 - AluY SINE Alu -4 307 1 3396 200 54 8 chr9 73306578 73307317 -44555310 - L1MB8 LINE L1 -2177 3969 3197 544 139 0 0 chr9 73307318 73307390 -44555237 + AluS SINE Alu 2 73 -239 411 70 0 0 chr9 73307468 73307525 -44555102 - MLT2C1 LTR ERVL 0 397 349 1623 106 0 5 chr9 73307594 73307812 -44554815 + AluSq SINE Alu 86 302 -11 438 15 132 0 chr9 73307989 73308125 -44554502 + (TA)n Simple_repeat Simple_repeat 1 154 0 36 53 0 0 chr9 73308138 73308195 -44554432 + AT_rich Low_complexity Low_complexity 1 57 0 794 227 8 38 chr9 73308195 73308272 -44554355 - L1M4 LINE L1 -869 5277 5199 2313 93 0 20 chr9 73308272 73308573 -44554054 - AluY SINE Alu -16 295 1 2192 93 7 0 chr9 73308575 73308865 -44553762 - AluSg SINE Alu -18 292 1 794 227 8 38 chr9 73308865 73309022 -44553605 - L1M4 LINE L1 -948 5198 5047 2297 171 50 87 chr9 73309038 73309624 -44553003 - L1MB2 LINE L1 -39 6132 5569 1048 242 92 35 chr9 73310554 73310891 -44551736 + L1M4 LINE L1 2827 3144 -3002 2001 125 38 0 chr9 73310891 73311180 -44551447 - AluSx SINE Alu -12 300 1 1048 242 92 35 chr9 73311180 73311268 -44551359 + L1M4 LINE L1 3144 3226 -2920 2417 74 0 3 chr9 73311268 73311567 -44551060 + AluY SINE Alu 7 304 -7 1048 242 92 35 chr9 73311567 73311653 -44550974 + L1M4 LINE L1 3226 3368 -2778 22 0 0 0 chr9 73311659 73311681 -44550946 + AT_rich Low_complexity Low_complexity 1 22 0 1968 75 12 4 chr9 73311689 73311943 -44550684 + AluSp SINE Alu 1 256 -57 853 164 0 20 chr9 73311949 73312095 -44550532 + AluJb SINE Alu 155 297 -15 2205 116 3 0 chr9 73312139 73312440 -44550187 - AluSg SINE Alu -8 302 1 1809 247 55 44 chr9 73312440 73312597 -44550030 - L1MC4a LINE L1 -1981 5827 5673 1954 80 88 0 chr9 73312597 73312871 -44549756 - AluSp SINE Alu -15 298 1 1804 142 7 4 chr9 73312872 73313147 -44549480 - AluSq SINE Alu -37 276 1 1809 247 55 44 chr9 73313147 73313530 -44549097 - L1MC4a LINE L1 -2134 5674 5279 2199 122 0 0 chr9 73313554 73313858 -44548769 - AluSq SINE Alu -9 304 1 615 282 142 30 chr9 73314122 73314686 -44547941 - L1M4 LINE L1 -1115 5031 4405 2167 79 54 0 chr9 73314719 73314999 -44547628 - AluSp SINE Alu -18 295 1 2515 55 19 10 chr9 73315168 73315476 -44547151 - AluY SINE Alu 0 311 1 222 37 0 0 chr9 73315637 73315664 -44546963 + (CA)n Simple_repeat Simple_repeat 1 27 0 2170 117 3 3 chr9 73315664 73315964 -44546663 - AluSq SINE Alu -13 300 1 1523 79 0 15 chr9 73317182 73317384 -44545243 - AluSg SINE Alu -4 305 107 275 0 29 0 chr9 73317384 73317419 -44545208 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 1944 59 62 37 chr9 73317419 73317692 -44544935 - AluSc SINE Alu -29 280 1 945 61 0 0 chr9 73317693 73317807 -44544820 - AluSg SINE Alu -196 114 1 227 233 50 0 chr9 73318032 73318092 -44544535 + MIR SINE MIR 49 111 -151 294 54 0 0 chr9 73318194 73318231 -44544396 + MADE1 DNA Mariner 44 80 0 311 250 67 50 chr9 73318241 73318361 -44544266 - L1MC5 LINE L1 -231 7730 7609 2236 87 3 13 chr9 73318816 73319128 -44543499 - AluSc SINE Alu 0 309 1 314 337 0 0 chr9 73319141 73319236 -44543391 + L2 LINE L2 1725 1819 -1495 2380 253 50 49 chr9 73319247 73319925 -44542702 - L1MEc LINE L1 -3277 2938 2262 895 143 0 0 chr9 73319925 73320058 -44542569 - FLAM_C SINE Alu 0 133 1 2380 253 50 49 chr9 73320058 73320507 -44542120 - L1MEc LINE L1 -3953 2262 1850 1900 139 14 0 chr9 73320507 73320802 -44541825 - AluSx SINE Alu -13 299 1 2380 253 50 49 chr9 73320802 73321010 -44541617 - L1MEc LINE L1 -4365 1850 1644 620 194 150 94 chr9 73321016 73321515 -44541112 - L1ME2 LINE L1 -1 6163 5544 3786 63 8 18 chr9 73321515 73321668 -44540959 - PABL_A LTR ERV1 0 660 507 2170 108 0 0 chr9 73321668 73321964 -44540663 + AluSx SINE Alu 2 297 -15 3786 63 8 18 chr9 73321964 73322298 -44540329 - PABL_A LTR ERV1 -153 507 178 1154 132 0 0 chr9 73322301 73322475 -44540152 + AluSg/x SINE Alu 129 302 -10 1164 78 145 0 chr9 73322475 73322641 -44539986 - PABL_A LTR ERV1 -470 190 1 5029 81 0 2 chr9 73322641 73323283 -44539344 - PABL_A-int LTR ERV1 0 5015 4375 1287 68 0 0 chr9 73323283 73323445 -44539182 - AluSc SINE Alu -16 293 132 8452 63 18 12 chr9 73323445 73324229 -44538398 - PABL_A-int LTR ERV1 -631 4384 3591 2211 97 0 13 chr9 73324229 73324539 -44538088 - AluSp SINE Alu -7 306 1 8452 63 18 12 chr9 73324539 73324877 -44537750 - PABL_A-int LTR ERV1 -1424 3591 3256 1983 108 10 7 chr9 73324877 73325173 -44537454 + AluSg SINE Alu 1 297 -13 5706 86 4 22 chr9 73325177 73325959 -44536668 - PABL_A-int LTR ERV1 -4246 769 2 5067 55 43 0 chr9 73325959 73326592 -44536035 - PABL_A LTR ERV1 0 660 1 259 270 124 0 chr9 73326593 73326682 -44535945 - L1ME2 LINE L1 -628 5546 5447 716 228 48 0 chr9 73326727 73326955 -44535672 - L1ME2 LINE L1 -1987 4159 3921 39 0 0 0 chr9 73326955 73326994 -44535633 + AT_rich Low_complexity Low_complexity 1 39 0 460 113 60 6 chr9 73327000 73327168 -44535459 + (TA)n Simple_repeat Simple_repeat 1 177 0 587 58 84 0 chr9 73327284 73327526 -44535101 + (TA)n Simple_repeat Simple_repeat 1 262 0 482 263 136 48 chr9 73327541 73327553 -44535074 - L1ME2 LINE L1 -2256 3890 3880 1704 172 7 3 chr9 73327553 73327849 -44534778 - AluJb SINE Alu -3 309 13 482 263 136 48 chr9 73327849 73327904 -44534723 - L1ME2 LINE L1 -2266 3880 3831 2247 100 0 0 chr9 73327904 73328205 -44534422 + AluSc SINE Alu 1 301 -8 482 263 136 48 chr9 73328205 73328710 -44533917 - L1ME2 LINE L1 -2315 3831 3220 1869 179 42 12 chr9 73328754 73329162 -44533465 - L1MB1 LINE L1 -3 6165 5746 1991 178 56 3 chr9 73329165 73329342 -44533285 - L1MB1 LINE L1 -503 5668 5502 258 32 0 0 chr9 73329342 73329373 -44533254 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 1991 178 56 3 chr9 73329373 73329844 -44532783 - L1MB1 LINE L1 -669 5502 4991 858 203 59 91 chr9 73329815 73330032 -44532595 - L1ME2 LINE L1 -2905 3241 3019 * 2449 61 0 3 chr9 73330032 73330343 -44532284 - AluY SINE Alu -1 310 1 858 203 59 91 chr9 73330343 73330385 -44532242 - L1ME2 LINE L1 -3127 3019 2977 2447 140 8 15 chr9 73330385 73330778 -44531849 - MLT1B LTR MaLR 0 390 1 858 203 59 91 chr9 73330778 73330990 -44531637 - L1ME2 LINE L1 -3169 2977 2784 1159 133 0 17 chr9 73330990 73331163 -44531464 - MER47B DNA MER2_type 0 418 249 816 73 0 27 chr9 73331162 73331272 -44531355 - MER4E LTR ERV1 -104 662 556 * 1276 160 105 46 chr9 73331270 73331421 -44531206 - MER47B DNA MER2_type -2068 255 84 1661 172 10 3 chr9 73331421 73331723 -44530904 + AluJo SINE Alu 1 304 -8 1276 160 105 46 chr9 73331723 73331809 -44530818 - MER47B DNA MER2_type -2239 84 4 735 250 41 31 chr9 73331809 73332101 -44530526 - L1ME2 LINE L1 -3377 2769 2475 237 152 0 0 chr9 73332095 73332141 -44530486 - L1M4 LINE L1 -920 5226 5181 * 549 192 40 0 chr9 73332141 73332240 -44530387 - L1M4 LINE L1 -2028 4118 4016 1989 97 41 10 chr9 73332252 73332542 -44530085 - AluSx SINE Alu -13 299 1 1994 114 21 3 chr9 73332733 73333023 -44529604 - AluSg SINE Alu -15 295 1 894 108 23 0 chr9 73333023 73333153 -44529474 - AluSg1 SINE Alu -176 133 1 5720 46 20 19 chr9 73333360 73334095 -44528532 - MER4E LTR ERV1 0 766 31 2088 100 3 3 chr9 73334270 73334560 -44528067 + AluSg SINE Alu 1 290 -20 24 0 0 0 chr9 73334849 73334873 -44527754 + AT_rich Low_complexity Low_complexity 1 24 0 2134 98 0 16 chr9 73334884 73335191 -44527436 + AluSc SINE Alu 1 302 -7 2307 54 0 13 chr9 73335215 73335513 -44527114 + AluY SINE Alu 2 295 -16 1905 139 20 0 chr9 73336559 73336860 -44525767 - AluSx SINE Alu -5 307 1 647 198 57 0 chr9 73337106 73337263 -44525364 + MER63C DNA MER1_type 83 248 -682 458 312 58 14 chr9 73337312 73337588 -44525039 + MER63C DNA MER1_type 244 531 -399 2004 110 31 0 chr9 73338080 73338372 -44524255 + AluSx SINE Alu 1 301 -11 577 238 16 26 chr9 73340342 73340531 -44522096 - MER53 DNA DNA 0 189 3 21 0 0 0 chr9 73340667 73340688 -44521939 + AT_rich Low_complexity Low_complexity 1 21 0 2392 74 0 3 chr9 73342973 73343283 -44519344 + AluSg SINE Alu 1 309 -1 2122 99 26 0 chr9 73343613 73343917 -44518710 - AluSx SINE Alu 0 312 1 2137 101 14 0 chr9 73345382 73345678 -44516949 - AluSp SINE Alu -13 300 1 2259 87 0 3 chr9 73345695 73346007 -44516620 - AluY SINE Alu 0 311 1 2087 101 0 10 chr9 73346100 73346397 -44516230 - AluSg SINE Alu -12 298 5 213 344 99 0 chr9 73346610 73346741 -44515886 + MIR SINE MIR 92 235 -27 931 232 90 34 chr9 73347456 73347810 -44514817 - MLT1A2 LTR MaLR 0 374 1 266 193 28 14 chr9 73350251 73350473 -44512154 + (TG)n Simple_repeat Simple_repeat 1 225 0 200 299 0 39 chr9 73352014 73352091 -44510536 + G-rich Low_complexity Low_complexity 3 76 0 1253 210 29 68 chr9 73354086 73354471 -44508156 + MLT1A2 LTR MaLR 5 374 0 341 140 150 30 chr9 73355993 73356093 -44506534 - L1MB8 LINE L1 0 6178 6067 1454 202 38 40 chr9 73356129 73356209 -44506418 - L1MB8 LINE L1 -75 6103 6024 2110 119 7 0 chr9 73356209 73356511 -44506116 + AluSx SINE Alu 1 304 -8 1454 202 38 40 chr9 73356511 73356617 -44506010 - L1MB8 LINE L1 -154 6024 5616 258 266 59 70 chr9 73356617 73356888 -44505739 - L1PA10 LINE L1 -243 5925 5658 209 131 66 0 chr9 73356913 73356974 -44505653 + (TA)n Simple_repeat Simple_repeat 1 65 0 1962 198 70 48 chr9 73357017 73357533 -44505094 - L1MB2 LINE L1 -76 6095 5569 795 212 82 21 chr9 73358464 73358794 -44503833 + L1M4 LINE L1 2828 3177 -2969 2012 122 3 0 chr9 73358802 73359096 -44503531 - AluSg SINE Alu -15 295 1 1703 247 55 51 chr9 73359096 73359253 -44503374 - L1MC4a LINE L1 -1981 5827 5672 1849 84 88 0 chr9 73359253 73359527 -44503100 - AluSp SINE Alu -15 298 1 1705 142 7 4 chr9 73359528 73359803 -44502824 - AluSq SINE Alu -37 276 1 1703 247 55 51 chr9 73359803 73360190 -44502437 - L1MC4a LINE L1 -2135 5673 5279 2114 119 0 0 chr9 73360215 73360518 -44502109 - AluSq SINE Alu -10 303 1 1978 102 0 32 chr9 73361306 73361591 -44501036 + AluSq SINE Alu 1 276 -37 25 31 0 0 chr9 73361597 73361629 -44500998 + AT_rich Low_complexity Low_complexity 1 32 0 220 340 49 39 chr9 73362504 73362707 -44499920 + L2 LINE L2 3108 3312 -1 499 208 16 32 chr9 73362853 73362978 -44499649 - LTR9 LTR ERV1 0 612 490 299 338 75 19 chr9 73363112 73363272 -44499355 - MLT1K LTR MaLR -205 383 215 404 235 193 27 chr9 73363301 73363488 -44499139 - MER2 DNA MER2_type 0 345 128 236 292 21 0 chr9 73363488 73363584 -44499043 - L2 LINE L2 -1232 2082 1985 2393 68 13 0 chr9 73363585 73363894 -44498733 + AluSq SINE Alu 1 313 0 1002 251 138 36 chr9 73363899 73364341 -44498286 - L2 LINE L2 -1480 1834 1348 678 286 109 8 chr9 73364349 73364615 -44498012 - L2 LINE L2 -2164 1150 858 423 275 129 16 chr9 73364625 73364818 -44497809 + MIR SINE MIR 1 215 -47 * 494 219 148 19 chr9 73364779 73364934 -44497693 - L2 LINE L2 -2474 840 666 2174 99 0 3 chr9 73364939 73365233 -44497394 + AluSg SINE Alu 2 294 -16 1113 83 7 0 chr9 73366018 73366163 -44496464 - AluSp SINE Alu -167 146 1 2283 91 3 0 chr9 73367036 73367334 -44495293 - AluSp SINE Alu -14 299 1 31 44 0 0 chr9 73368105 73368150 -44494477 + AT_rich Low_complexity Low_complexity 1 45 0 2199 90 0 3 chr9 73368219 73368518 -44494109 - AluY SINE Alu -13 298 1 3117 109 22 75 chr9 73368670 73369026 -44493601 - MER75 DNA T2_type 0 514 141 2083 136 0 0 chr9 73369026 73369321 -44493306 + AluSx SINE Alu 1 295 -17 3117 109 22 75 chr9 73369321 73369342 -44493285 - MER75 DNA T2_type -373 141 120 2360 94 0 7 chr9 73369342 73369650 -44492977 + AluSc SINE Alu 1 306 -3 3117 109 22 75 chr9 73369650 73369814 -44492813 - MER75 DNA T2_type -394 120 1 24 32 0 0 chr9 73370464 73370495 -44492132 + AT_rich Low_complexity Low_complexity 1 31 0 3151 142 45 36 chr9 73370495 73371057 -44491570 + L1MC1 LINE L1 5767 6333 0 2287 102 0 0 chr9 73371411 73371706 -44490921 - AluSg SINE Alu -15 295 1 229 208 0 0 chr9 73371712 73371765 -44490862 + LTR50 LTR ERVL 3 55 -740 872 213 0 7 chr9 73372546 73372696 -44489931 + AluJb SINE Alu 134 282 -30 21 0 0 0 chr9 73372708 73372729 -44489898 + AT_rich Low_complexity Low_complexity 1 21 0 3526 84 29 4 chr9 73373601 73374089 -44488538 + LTR8 LTR ERV1 1 500 -191 277 246 61 35 chr9 73374110 73374224 -44488403 - L1M4 LINE L1 -1478 4668 4552 1203 144 94 0 chr9 73374230 73374432 -44488195 - AluSg/x SINE Alu -15 297 77 571 184 57 35 chr9 73374432 73374573 -44488054 + L1MC4a LINE L1 7074 7217 -591 1395 134 40 28 chr9 73374573 73374820 -44487807 + AluSx SINE Alu 61 310 -2 909 271 46 63 chr9 73374829 73375013 -44487614 + L1ME3A LINE L1 4549 4734 -1412 2150 115 0 0 chr9 73375013 73375292 -44487335 + AluSx SINE Alu 1 279 -33 909 271 46 63 chr9 73375292 73375538 -44487089 + L1ME3A LINE L1 4734 4972 -1174 2180 129 0 6 chr9 73376310 73376621 -44486006 + AluSq SINE Alu 1 309 -4 812 243 193 27 chr9 73376699 73377140 -44485487 + L1ME3A LINE L1 5255 5768 -416 1585 252 46 35 chr9 73377141 73377378 -44485249 - MER68 LTR ERV1 0 562 329 1552 124 162 0 chr9 73377378 73377643 -44484984 + AluSx SINE Alu 1 308 -4 1585 252 46 35 chr9 73377643 73377973 -44484654 - MER68 LTR ERV1 -233 329 1 622 239 213 23 chr9 73378004 73378314 -44484313 + L1ME3A LINE L1 5797 6165 -5 33 46 0 15 chr9 73378618 73378647 -44483980 + AT_rich Low_complexity Low_complexity 1 29 -35 2108 132 0 0 chr9 73378647 73378934 -44483693 - AluSg SINE Alu -23 287 1 33 46 0 15 chr9 73378934 73378969 -44483658 + AT_rich Low_complexity Low_complexity 29 64 0 254 260 43 13 chr9 73379068 73379211 -44483416 + L1M4 LINE L1 110 466 -6389 1782 234 45 108 chr9 73379495 73379821 -44482806 + L1M4 LINE L1 1016 1361 -5494 1605 186 0 46 chr9 73379821 73379956 -44482671 + AluJo SINE Alu 1 141 -171 2291 73 6 35 chr9 73379956 73380272 -44482355 + AluY SINE Alu 1 307 -4 1605 186 0 46 chr9 73380272 73380443 -44482184 + AluJo SINE Alu 141 293 -19 1782 234 45 108 chr9 73380443 73380668 -44481959 + L1M4 LINE L1 1361 1599 -5256 933 135 8 8 chr9 73380668 73380801 -44481826 + FLAM_C SINE Alu 1 133 0 1782 234 45 108 chr9 73380801 73380823 -44481804 + L1M4 LINE L1 1599 1621 -5234 2091 110 24 14 chr9 73380823 73381115 -44481512 + AluSx SINE Alu 1 295 -17 1782 234 45 108 chr9 73381115 73381402 -44481225 + L1M4 LINE L1 1621 1801 -5054 2235 75 0 7 chr9 73381402 73381682 -44480945 + AluSg SINE Alu 1 278 -32 1782 234 45 108 chr9 73381682 73381885 -44480742 + L1M4 LINE L1 1801 2015 -4840 2109 113 3 0 chr9 73381898 73382210 -44480417 - AluSp SINE Alu 0 313 1 734 176 27 20 chr9 73382211 73382359 -44480268 + L1MB3 LINE L1 6028 6176 -7 224 250 14 69 chr9 73382428 73382500 -44480127 - L2 LINE L2 0 3313 3246 2373 94 3 0 chr9 73382685 73382984 -44479643 - AluSp SINE Alu -13 300 1 852 186 0 0 chr9 73383195 73383324 -44479303 - FLAM_A SINE Alu -4 129 1 24 0 0 0 chr9 73383374 73383398 -44479229 + AT_rich Low_complexity Low_complexity 1 24 0 1906 125 39 32 chr9 73383702 73384014 -44478613 + MER1B DNA MER1_type 26 339 0 180 0 0 0 chr9 73384160 73384180 -44478447 + (A)n Simple_repeat Simple_repeat 1 20 0 2029 118 3 3 chr9 73384613 73384901 -44477726 + AluSg SINE Alu 5 292 -18 227 348 35 43 chr9 73384970 73385085 -44477542 + MIR SINE MIR 40 153 -55 303 283 51 51 chr9 73385230 73385368 -44477259 + L2 LINE L2 2595 2732 -582 470 281 127 89 chr9 73385388 73385883 -44476744 + MLT1H LTR MaLR 13 526 -23 686 88 0 0 chr9 73385888 73385979 -44476648 - AluSg/x SINE Alu -2 308 218 251 174 18 0 chr9 73385979 73386034 -44476593 - Alu SINE Alu -270 38 1 248 250 50 0 chr9 73386036 73386096 -44476531 - L1MC/D LINE L1 -1999 5809 5747 1691 211 40 40 chr9 73386132 73386559 -44476068 - L1MD3 LINE L1 -6 7989 7563 3121 151 18 34 chr9 73386561 73387117 -44475510 - L1MB7 LINE L1 -16 6168 5622 292 217 2 0 chr9 73387142 73387201 -44475426 - L1MB7 LINE L1 -468 5653 5593 766 268 129 21 chr9 73387276 73387616 -44475011 + L1MC5 LINE L1 5258 5634 -2174 2237 105 0 0 chr9 73387682 73387978 -44474649 + AluSq SINE Alu 1 296 -17 353 258 23 35 chr9 73387981 73388112 -44474515 + L1MC5 LINE L1 7130 7259 -727 21 0 0 0 chr9 73388506 73388527 -44474100 + AT_rich Low_complexity Low_complexity 1 21 0 1883 113 60 0 chr9 73388527 73388793 -44473834 + AluSg SINE Alu 2 283 -27 372 229 85 18 chr9 73388800 73388998 -44473629 - L1MB7 LINE L1 -736 5434 5271 625 192 108 8 chr9 73389049 73389169 -44473458 + FLAM_A SINE Alu 1 132 -1 1503 201 0 39 chr9 73389171 73389480 -44473147 + AluJo SINE Alu 1 297 -15 2141 214 117 40 chr9 73389523 73390129 -44472498 + L1MB3 LINE L1 2506 3064 -3082 1424 184 41 41 chr9 73390129 73390422 -44472205 + AluJb SINE Alu 1 293 -19 2259 71 19 32 chr9 73390425 73390736 -44471891 + AluY SINE Alu 1 307 -4 2141 214 117 40 chr9 73390736 73391059 -44471568 + L1MB3 LINE L1 3065 3511 -2635 268 203 16 16 chr9 73391081 73391145 -44471482 + L1MB3 LINE L1 3589 3652 -2494 471 127 89 13 chr9 73391145 73391222 -44471405 - Tigger7 DNA MER2_type 0 2487 2405 453 179 0 75 chr9 73391222 73391328 -44471299 - Tigger5 DNA MER2_type 0 2323 2226 403 145 29 0 chr9 73391301 73391370 -44471257 + Tigger5 DNA MER2_type 2250 2320 -3 * 384 208 26 0 chr9 73391370 73391446 -44471181 - Tigger5 DNA MER2_type -2245 78 1 328 95 111 0 chr9 73391446 73391506 -44471121 - Tigger7 DNA MER2_type -81 2406 2340 1446 188 113 7 chr9 73391507 73391799 -44470828 - Tigger7 DNA MER2_type -2148 339 17 6616 199 30 50 chr9 73391839 73391873 -44470754 + L1MB3 LINE L1 3663 3696 -2487 2200 130 0 0 chr9 73391873 73392174 -44470453 + AluSg SINE Alu 1 301 -9 6616 199 30 50 chr9 73392174 73392878 -44469749 + L1MB3 LINE L1 3696 4412 -1771 1671 188 10 13 chr9 73392878 73393012 -44469615 + AluJo SINE Alu 1 134 -178 1975 145 10 0 chr9 73393012 73393315 -44469312 + AluSp SINE Alu 1 306 -7 1671 188 10 13 chr9 73393315 73393483 -44469144 + AluJo SINE Alu 134 302 -10 6616 199 30 50 chr9 73393483 73393921 -44468706 + L1MB3 LINE L1 4412 4857 -1326 661 214 0 53 chr9 73393921 73394031 -44468596 + FLAM_A SINE Alu 4 107 -195 2552 52 0 13 chr9 73394031 73394337 -44468290 - AluY SINE Alu -9 302 1 661 214 0 53 chr9 73394337 73394357 -44468270 + FLAM_A SINE Alu 107 127 -175 6616 199 30 50 chr9 73394357 73394952 -44467675 + L1MB3 LINE L1 4857 5462 -721 1982 151 0 19 chr9 73394952 73395270 -44467357 + AluSx SINE Alu 1 312 0 6616 199 30 50 chr9 73395270 73395348 -44467279 + L1MB3 LINE L1 5462 5540 -643 1146 197 119 61 chr9 73395348 73395693 -44466934 - MLT1A1 LTR MaLR 0 365 1 6616 199 30 50 chr9 73395693 73396114 -44466513 + L1MB3 LINE L1 5540 5875 -308 2155 80 0 4 chr9 73396114 73396389 -44466238 + AluSq SINE Alu 1 274 -39 6616 199 30 50 chr9 73396389 73396642 -44465985 + L1MB3 LINE L1 5875 6131 -52 1092 202 56 42 chr9 73396665 73397021 -44465606 + L1MC3 LINE L1 4978 5338 -808 746 189 39 39 chr9 73397017 73397197 -44465430 + L1MB7 LINE L1 5986 6165 -19 * 4253 77 24 11 chr9 73397280 73397826 -44464801 + MER41A LTR ERV1 1 553 -1 503 181 292 21 chr9 73397827 73397971 -44464656 + MLT1L LTR MaLR 361 543 -72 337 183 42 14 chr9 73397999 73398070 -44464557 + L1MC3 LINE L1 5324 5396 -937 2069 116 7 10 chr9 73398073 73398374 -44464253 + AluSx SINE Alu 2 301 -11 284 210 0 0 chr9 73398401 73398463 -44464164 + AluJ/monomer SINE Alu 240 301 0 6118 155 115 120 chr9 73398533 73398984 -44463643 + L1MC3 LINE L1 5850 6302 -1483 359 153 0 0 chr9 73398984 73399043 -44463584 - Charlie1 DNA MER1_type -813 1948 1890 6118 155 115 120 chr9 73399043 73399083 -44463544 + L1MC3 LINE L1 6302 6341 -1444 1759 172 85 85 chr9 73399083 73399447 -44463180 + LOR1b LTR ERV1 1 367 -94 2330 89 6 6 chr9 73399447 73399760 -44462867 + AluSq SINE Alu 1 313 0 1759 172 85 85 chr9 73399760 73399855 -44462772 + LOR1b LTR ERV1 366 460 -1 6118 155 115 120 chr9 73399855 73400362 -44462265 + L1MC3 LINE L1 6341 6849 -936 4964 71 21 47 chr9 73400362 73400454 -44462173 + PABL_A LTR ERV1 3 96 -564 2014 110 0 28 chr9 73400454 73400744 -44461883 + AluSx SINE Alu 1 282 -30 4964 71 21 47 chr9 73400744 73401327 -44461300 + PABL_A LTR ERV1 96 660 0 6118 155 115 120 chr9 73401327 73401544 -44461083 + L1MC3 LINE L1 6849 7066 -719 244 308 11 11 chr9 73401544 73401635 -44460992 + MLT1L LTR MaLR 35 125 -442 6118 155 115 120 chr9 73401635 73402039 -44460588 + L1MC3 LINE L1 7066 7611 -174 910 152 98 0 chr9 73402090 73402254 -44460373 - AluJb SINE Alu -132 180 1 918 161 29 0 chr9 73402257 73402431 -44460196 + L1MC3 LINE L1 7607 7785 0 2254 104 3 0 chr9 73402511 73402808 -44459819 + AluSp SINE Alu 1 298 -15 912 217 75 28 chr9 73402818 73403030 -44459597 + MER58A DNA MER1_type 1 222 -2 1926 148 3 13 chr9 73403037 73403347 -44459280 - AluSx SINE Alu -4 308 2 234 59 118 0 chr9 73403659 73403693 -44458934 + Alu SINE Alu 165 202 -100 785 285 156 25 chr9 73403796 73404161 -44458466 + MLT1L LTR MaLR 143 555 -60 2360 108 0 0 chr9 73404368 73404675 -44457952 + AluSx SINE Alu 1 307 -5 1650 178 53 0 chr9 73404850 73405131 -44457496 + AluJb SINE Alu 1 296 -16 22 56 0 0 chr9 73405296 73405332 -44457295 + AT_rich Low_complexity Low_complexity 1 36 0 361 154 187 33 chr9 73405603 73405694 -44456933 - L2 LINE L2 0 3272 3168 752 227 40 27 chr9 73405844 73406069 -44456558 - MIR SINE MIR -32 230 3 2318 74 35 0 chr9 73406791 73407076 -44455551 + AluSc SINE Alu 1 295 -14 858 159 0 0 chr9 73407570 73407697 -44454930 + FLAM_C SINE Alu 6 133 -6 1874 121 39 4 chr9 73407697 73407977 -44454650 - AluSx SINE Alu -22 290 1 1577 170 85 0 chr9 73408199 73408482 -44454145 - AluJb SINE Alu -5 307 1 449 256 36 7 chr9 73408824 73408961 -44453666 - MER20B DNA MER1_type -145 638 498 2478 38 10 0 chr9 73409349 73409640 -44452987 - AluY SINE Alu -17 294 1 208 211 77 0 chr9 73409647 73409699 -44452928 - MIR SINE MIR -64 144 89 1922 185 36 21 chr9 73410105 73410489 -44452138 + MLT1B LTR MaLR 1 390 0 739 162 72 24 chr9 73410489 73410656 -44451971 + MLT1B-int LTR MaLR 1 175 -1196 584 187 140 0 chr9 73410656 73410763 -44451864 + FLAM_C SINE Alu 2 123 -20 237 33 0 0 chr9 73410771 73410801 -44451826 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 3497 200 69 83 chr9 73410805 73411895 -44450732 + MLT1B-int LTR MaLR 277 1351 -20 1693 217 37 18 chr9 73411905 73412288 -44450339 + MLT1B LTR MaLR 1 390 0 497 159 106 18 chr9 73414241 73414354 -44448273 + LTR58 LTR ERV1 555 677 -2 1855 80 34 0 chr9 73415054 73415291 -44447336 - AluSx SINE Alu -7 305 61 974 61 0 0 chr9 73415291 73415406 -44447221 - AluSq/x SINE Alu -196 116 2 2261 94 10 3 chr9 73415624 73415921 -44446706 - AluSx SINE Alu -13 299 1 3407 229 64 32 chr9 73416322 73416735 -44445892 + L1ME1 LINE L1 4278 4676 -1490 1825 109 0 12 chr9 73416735 73417006 -44445621 - AluSg SINE Alu 0 304 37 3407 229 64 32 chr9 73417006 73418394 -44444233 + L1ME1 LINE L1 4676 6140 -26 2085 132 3 0 chr9 73418457 73418753 -44443874 - AluSx SINE Alu -11 301 5 1071 274 54 31 chr9 73418972 73419349 -44443278 + L1ME LINE L1 5256 5648 -514 2327 104 0 0 chr9 73419349 73419646 -44442981 - AluSg SINE Alu -13 297 1 1071 274 54 31 chr9 73419646 73419746 -44442881 + L1ME LINE L1 5648 5744 -418 2171 125 0 13 chr9 73420083 73420396 -44442231 + AluSx SINE Alu 1 309 -3 318 50 0 0 chr9 73421156 73421196 -44441431 + (CA)n Simple_repeat Simple_repeat 1 40 0 2164 244 56 41 chr9 73421652 73422450 -44440177 - L1MDa LINE L1 -1310 5334 4525 2305 121 0 0 chr9 73422452 73422759 -44439868 + AluSg1 SINE Alu 1 307 -2 36 23 0 0 chr9 73422791 73422834 -44439793 + AT_rich Low_complexity Low_complexity 1 43 0 3485 140 62 52 chr9 73422847 73423559 -44439068 + L1MB4 LINE L1 5461 6179 -1 385 245 27 41 chr9 73423574 73423721 -44438906 - L1MDa LINE L1 -2151 4493 4349 321 256 68 8 chr9 73423770 73423887 -44438740 - L1MDa LINE L1 -3400 3244 3121 * 1481 198 52 71 chr9 73423859 73424004 -44438623 - L1MDa LINE L1 -4028 2616 2470 2247 110 0 0 chr9 73424004 73424296 -44438331 - AluSx SINE Alu -20 292 1 1481 198 52 71 chr9 73424296 73424388 -44438239 - L1MDa LINE L1 -4174 2470 2378 1725 195 3 0 chr9 73424388 73424686 -44437941 - AluJo SINE Alu -13 299 1 1481 198 52 71 chr9 73424686 73424928 -44437699 - L1MDa LINE L1 -4266 2378 2145 1280 158 114 16 chr9 73424934 73425188 -44437439 - MSTA LTR MaLR -21 407 129 2252 85 4 0 chr9 73426140 73426447 -44436180 + AluY SINE Alu 1 308 0 630 184 0 0 chr9 73427271 73427380 -44435247 - MSTA LTR MaLR -319 109 1 1954 214 46 14 chr9 73427382 73427782 -44434845 - MER68 LTR ERV1 -12 550 135 2357 82 3 7 chr9 73427782 73428076 -44434551 - AluSp SINE Alu -20 293 1 1954 214 46 14 chr9 73428076 73428090 -44434537 - MER68 LTR ERV1 -427 135 123 1506 218 126 28 chr9 73428093 73428593 -44434034 - L1MDa LINE L1 -4734 1910 1362 2696 207 48 20 chr9 73428610 73429292 -44433335 - L1M4 LINE L1 -1198 4948 4248 2342 105 0 0 chr9 73429357 73429661 -44432966 - AluSx SINE Alu -8 304 1 2370 98 0 10 chr9 73429710 73430017 -44432610 - AluSx SINE Alu -8 304 1 378 171 184 40 chr9 73430025 73430177 -44432450 - L1MDa LINE L1 -5238 1304 1131 310 231 0 0 chr9 73430286 73430351 -44432276 - L1MDa LINE L1 -6430 112 48 2175 104 4 4 chr9 73430374 73430675 -44431952 - AluSc SINE Alu 0 301 1 1095 167 107 4 chr9 73430718 73430951 -44431676 + L1MB8 LINE L1 5906 6162 -16 21 0 0 0 chr9 73431081 73431102 -44431525 + AT_rich Low_complexity Low_complexity 1 21 0 671 111 0 10 chr9 73431118 73431217 -44431410 + MER4A LTR ERV1 1 98 -566 1568 140 175 86 chr9 73431217 73431519 -44431108 + MER4A LTR ERV1 261 603 -61 5891 48 29 5 chr9 73431519 73431801 -44430826 + MER4E LTR ERV1 1 275 -491 180 0 0 0 chr9 73431801 73431821 -44430806 + (TTCC)n Simple_repeat Simple_repeat 1 20 0 5891 48 29 5 chr9 73431821 73432286 -44430341 + MER4E LTR ERV1 275 766 0 1568 140 175 86 chr9 73432286 73432354 -44430273 + MER4A LTR ERV1 603 664 0 3110 138 42 20 chr9 73432733 73433276 -44429351 + LTR10A LTR ERV1 1 555 -54 1238 89 0 0 chr9 73434142 73434300 -44428327 - AluSg/x SINE Alu -8 304 147 2327 68 4 0 chr9 73434403 73434683 -44427944 - AluSx SINE Alu -20 292 12 2621 39 0 7 chr9 73435848 73436154 -44426473 - AluY SINE Alu -6 305 2 1473 173 38 57 chr9 73436299 73436617 -44426010 + AluJo SINE Alu 1 312 0 223 294 41 48 chr9 73438003 73438149 -44424478 - MIR3 SINE MIR -62 146 2 288 256 15 15 chr9 73439212 73439349 -44423278 + (CGG)n Simple_repeat Simple_repeat 2 138 0 2146 84 0 71 chr9 73439990 73440313 -44422314 + AluSx SINE Alu 1 300 -12 2328 93 3 0 chr9 73440414 73440716 -44421911 + AluSq SINE Alu 1 303 -10 207 0 0 0 chr9 73440782 73440805 -44421822 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1214 106 0 0 chr9 73440913 73441074 -44421553 + AluSp SINE Alu 136 296 -17 632 240 60 4 chr9 73441089 73441304 -44421323 + L1MA10 LINE L1 5936 6333 -1 1687 176 3 13 chr9 73441346 73441647 -44420980 + AluJo SINE Alu 2 299 -13 2438 73 0 13 chr9 73441828 73442129 -44420498 - AluY SINE Alu -14 297 1 1853 168 0 16 chr9 73442424 73442728 -44419899 + AluJo SINE Alu 1 299 -13 2300 100 3 0 chr9 73442729 73443030 -44419597 + AluSq SINE Alu 1 302 -11 292 294 13 52 chr9 73443034 73443187 -44419440 + L1MB2 LINE L1 3309 3455 -2691 1029 200 0 0 chr9 73443310 73443490 -44419137 + MSTB LTR MaLR 2 181 -245 1417 138 112 0 chr9 73443491 73443715 -44418912 - AluSx SINE Alu -9 303 55 1027 146 108 28 chr9 73443716 73443929 -44418698 + MSTB LTR MaLR 165 394 -32 2026 108 6 70 chr9 73443974 73444290 -44418337 - AluSx SINE Alu -16 296 1 338 200 25 0 chr9 73444290 73444370 -44418257 + L1MB7 LINE L1 6024 6105 -79 325 150 150 30 chr9 73444406 73444506 -44418121 + L1MB8 LINE L1 6067 6178 0 1235 210 29 68 chr9 73446025 73446410 -44416217 - MLT1A2 LTR MaLR 0 374 5 1221 186 0 5 chr9 73447466 73447676 -44414951 + AluJo SINE Alu 93 301 -11 2042 121 0 42 chr9 73447703 73448010 -44414617 + AluSx SINE Alu 1 294 -18 291 303 99 49 chr9 73448100 73448242 -44414385 + MIR3 SINE MIR 34 182 -26 295 249 60 45 chr9 73448444 73448645 -44413982 - L1ME4a LINE L1 0 6121 5918 1189 272 86 27 chr9 73450470 73450959 -44411668 + L1MEc LINE L1 134 651 -5745 1579 214 86 119 chr9 73451041 73451300 -44411327 + L1MB2 LINE L1 4365 4631 -1515 550 202 0 0 chr9 73451300 73451404 -44411223 + FRAM SINE Alu 67 170 -6 1579 214 86 119 chr9 73451404 73452150 -44410477 + L1MB2 LINE L1 4631 5252 -894 1379 195 79 10 chr9 73452152 73452455 -44410172 - MSTD LTR MaLR 0 396 73 272 185 231 0 chr9 73452496 73452561 -44410066 - MSTD LTR MaLR -348 80 1 385 98 11 87 chr9 73452566 73452652 -44409975 + L1MB2 LINE L1 5254 5333 -833 1946 141 0 16 chr9 73452652 73452958 -44409669 + AluJb SINE Alu 1 301 -11 1765 147 26 26 chr9 73452963 73453300 -44409327 + L1MB2 LINE L1 5831 6170 -1 2308 207 80 105 chr9 73453306 73453827 -44408800 + L1ME1 LINE L1 4316 4849 -1317 2305 111 0 0 chr9 73453827 73454125 -44408502 + AluSg SINE Alu 1 298 -12 2308 207 80 105 chr9 73454125 73454296 -44408331 + L1ME1 LINE L1 4849 5023 -1143 469 179 13 0 chr9 73454296 73454374 -44408253 + AluY SINE Alu 2 80 -238 1918 82 0 114 chr9 73454375 73454692 -44407935 + AluY SINE Alu 16 296 -15 2308 207 80 105 chr9 73454692 73455030 -44407597 + L1ME1 LINE L1 5023 5368 -798 1807 178 3 3 chr9 73455030 73455328 -44407299 + AluJb SINE Alu 5 302 -10 2308 207 80 105 chr9 73455328 73455532 -44407095 + L1ME1 LINE L1 5368 5576 -590 939 136 0 0 chr9 73455532 73455664 -44406963 - FLAM_C SINE Alu -1 132 1 2308 207 80 105 chr9 73455664 73456017 -44406610 + L1ME1 LINE L1 5576 5938 -228 2412 78 3 0 chr9 73456017 73456312 -44406315 + AluSp SINE Alu 1 296 -17 2308 207 80 105 chr9 73456312 73456530 -44406097 + L1ME1 LINE L1 5938 6160 -6 1658 179 3 13 chr9 73456586 73456887 -44405740 + AluJo SINE Alu 2 299 -13 2346 78 0 20 chr9 73457068 73457374 -44405253 - AluY SINE Alu -11 300 1 1910 158 0 19 chr9 73457669 73457980 -44404647 + AluJo SINE Alu 1 305 -7 2265 104 3 0 chr9 73457981 73458278 -44404349 + AluSq SINE Alu 1 298 -15 292 294 13 52 chr9 73458282 73458435 -44404192 + L1M4 LINE L1 3309 3455 -2691 996 206 0 0 chr9 73458558 73458738 -44403889 + MSTB LTR MaLR 2 181 -245 1368 136 127 0 chr9 73458739 73458960 -44403667 - AluSx SINE Alu -9 303 55 1087 135 103 63 chr9 73458961 73459213 -44403414 + MSTB LTR MaLR 165 426 0 2315 60 3 73 chr9 73459220 73459537 -44403090 - AluSc SINE Alu -13 296 2 1495 181 32 41 chr9 73459682 73459997 -44402630 + AluJo SINE Alu 1 312 0 223 294 41 48 chr9 73461367 73461513 -44401114 - MIR3 SINE MIR -62 146 2 2163 82 3 70 chr9 73463284 73463613 -44399014 + AluSx SINE Alu 1 307 -5 2229 94 7 3 chr9 73463713 73464011 -44398616 + AluSq SINE Alu 1 299 -14 363 23 0 0 chr9 73464044 73464088 -44398539 + (CA)n Simple_repeat Simple_repeat 2 45 0 1658 124 0 50 chr9 73464106 73464392 -44398235 - AluSx SINE Alu 0 311 39 1970 131 20 0 chr9 73464404 73464701 -44397926 - AluSq SINE Alu -10 303 1 1951 120 42 0 chr9 73464867 73465150 -44397477 - AluSx SINE Alu -17 295 1 1940 164 0 0 chr9 73465444 73465743 -44396884 - AluJo SINE Alu -13 299 1 1201 153 91 0 chr9 73465878 73466087 -44396540 - MER77 LTR ERV1 -11 594 367 404 200 185 0 chr9 73466135 73466270 -44396357 - L1MC4a LINE L1 -1373 6435 6276 533 223 146 10 chr9 73466305 73466497 -44396130 - L1MC4a LINE L1 -1486 6322 6084 596 108 0 0 chr9 73466497 73466580 -44396047 + AluJ/FLAM SINE Alu 2 84 -228 1213 185 6 118 chr9 73467012 73467342 -44395285 - AluJo SINE Alu -7 295 3 2153 113 14 0 chr9 73467345 73467637 -44394990 - AluSx SINE Alu -15 297 2 225 94 0 0 chr9 73467736 73467768 -44394859 + (T)n Simple_repeat Simple_repeat 1 32 0 4772 71 84 0 chr9 73467938 73468583 -44394044 + L1PA4 LINE L1 5457 6155 0 6031 108 2 3 chr9 73469040 73470085 -44392542 + L1PA14 LINE L1 5102 6144 -17 185 388 29 29 chr9 73470096 73470266 -44392361 + L2 LINE L2 2688 2857 -457 213 108 0 0 chr9 73470513 73470550 -44392077 + (A)n Simple_repeat Simple_repeat 1 37 0 2301 94 10 0 chr9 73470561 73470869 -44391758 + AluSx SINE Alu 2 312 0 720 223 67 111 chr9 73470869 73471318 -44391309 - LTR37B LTR ERV1 -30 438 10 756 240 71 18 chr9 73471407 73471674 -44390953 + Charlie2 DNA MER1_type 4 242 -2540 374 207 80 87 chr9 73471738 73471840 -44390787 + Charlie2 DNA MER1_type 2714 2816 -46 1561 163 57 18 chr9 73471840 73472005 -44390622 - AluJo SINE Alu -15 297 115 210 71 0 0 chr9 73472005 73472033 -44390594 + (TTG)n Simple_repeat Simple_repeat 3 30 0 1561 163 57 18 chr9 73472033 73472150 -44390477 - AluJo SINE Alu -197 115 4 374 207 80 87 chr9 73472150 73472197 -44390430 + Charlie2 DNA MER1_type 2816 2862 0 214 306 83 0 chr9 73472704 73472776 -44389851 + L2 LINE L2 3146 3223 -49 245 333 159 0 chr9 73472782 73472983 -44389644 - MIR SINE MIR 0 262 30 218 284 135 0 chr9 73473727 73473801 -44388826 + MIR3 SINE MIR 85 168 -40 2227 133 0 0 chr9 73474390 73474698 -44387929 - AluSx SINE Alu -4 308 1 420 245 29 0 chr9 73475042 73475144 -44387483 + MER81 DNA DNA 4 108 -6 466 302 48 0 chr9 73475701 73475890 -44386737 - MIR SINE MIR -15 247 50 927 183 71 0 chr9 73475990 73476159 -44386468 - AluJo SINE Alu -131 181 1 2291 91 10 3 chr9 73476173 73476480 -44386147 - AluSq SINE Alu -4 309 1 198 266 36 115 chr9 73476543 73476682 -44385945 - L2 LINE L2 -2 3270 3143 2403 84 3 0 chr9 73476704 73477002 -44385625 - AluY SINE Alu -12 299 1 1605 114 61 30 chr9 73477022 73477285 -44385342 - MER2 DNA MER2_type -74 271 1 3738 170 51 20 chr9 73477285 73477967 -44384660 + ERVL LTR ERVL 3506 4208 -1556 309 204 130 9 chr9 73477968 73478058 -44384569 + L2 LINE L2 3193 3299 -14 2195 136 58 62 chr9 73478058 73478267 -44384360 + Tigger2a DNA MER2_type 2 210 -2498 2283 90 0 13 chr9 73478267 73478566 -44384061 - AluY SINE Alu -16 295 1 2195 136 58 62 chr9 73478566 73478791 -44383836 + Tigger2a DNA MER2_type 210 434 0 309 204 130 9 chr9 73478791 73478808 -44383819 + L2 LINE L2 3299 3313 0 1957 163 64 0 chr9 73478923 73479249 -44383378 + MER7A DNA MER2_type 2 346 0 2802 111 64 13 chr9 73479589 73480041 -44382586 - MER9 LTR ERVK 0 511 37 2170 97 28 14 chr9 73481279 73481568 -44381059 + AluSg1 SINE Alu 1 293 -16 263 246 0 0 chr9 73482263 73482320 -44380307 - MIR SINE MIR 0 262 206 2164 109 0 48 chr9 73482347 73482482 -44380145 + AluSx SINE Alu 1 141 -171 1919 98 56 52 chr9 73482482 73482788 -44379839 + AluSq SINE Alu 1 307 -6 2164 109 0 48 chr9 73482788 73482963 -44379664 + AluSx SINE Alu 141 296 -16 2068 120 10 13 chr9 73482965 73483266 -44379361 + AluSx SINE Alu 1 300 -12 502 243 79 0 chr9 73483611 73483763 -44378864 - MER46C DNA MER2_type 0 338 175 2304 78 7 3 chr9 73485225 73485521 -44377106 - AluY SINE Alu -14 297 1 1918 114 0 7 chr9 73486011 73486282 -44376345 + AluSq SINE Alu 35 303 -10 202 86 0 114 chr9 73487864 73487934 -44374693 + (A)n Simple_repeat Simple_repeat 1 62 0 261 0 0 0 chr9 73488984 73489013 -44373614 + (A)n Simple_repeat Simple_repeat 1 29 0 730 168 0 15 chr9 73489084 73489215 -44373412 - FLAM_C SINE Alu -4 129 1 2533 69 0 0 chr9 73489340 73489643 -44372984 + AluSc SINE Alu 1 303 -6 2117 168 60 0 chr9 73489957 73490337 -44372290 + MER57A LTR ERV1 1 403 0 24 32 0 0 chr9 73490392 73490423 -44372204 + AT_rich Low_complexity Low_complexity 1 31 0 1194 134 109 53 chr9 73490524 73490771 -44371856 + AluJb SINE Alu 44 304 -8 982 234 28 1 chr9 73490897 73491225 -44371402 - MER89 LTR ERV1 0 559 197 357 143 32 0 chr9 73491238 73491301 -44371326 - MER89 LTR ERV1 -494 65 1 2064 130 23 10 chr9 73491950 73492250 -44370377 + AluSx SINE Alu 1 304 -8 1480 237 98 27 chr9 73492947 73493386 -44369241 - MLT1D LTR MaLR 0 505 36 2221 106 0 0 chr9 73493487 73493827 -44368800 + AluSx SINE Alu 1 340 0 1844 140 0 7 chr9 73494023 73494308 -44368319 + AluJo SINE Alu 13 295 -17 246 139 56 120 chr9 73494403 73494511 -44368116 + MER92C LTR ERV1 449 549 -5 213 241 17 0 chr9 73494676 73494734 -44367893 - MIR SINE MIR -40 222 164 546 206 37 7 chr9 73494739 73494875 -44367752 - MER5A DNA MER1_type -5 184 45 2149 96 7 0 chr9 73494875 73495155 -44367472 + AluSx SINE Alu 1 282 -30 216 0 0 0 chr9 73495167 73495191 -44367436 + (CAA)n Simple_repeat Simple_repeat 2 25 0 2217 94 0 7 chr9 73496380 73496666 -44365961 - AluSx SINE Alu -28 284 1 2241 96 7 10 chr9 73497511 73497814 -44364813 - AluSq SINE Alu -11 302 1 230 125 125 31 chr9 73498648 73498712 -44363915 + L1MA9 LINE L1 6243 6312 0 276 314 29 0 chr9 73498986 73499088 -44363539 + MIR SINE MIR 88 192 -70 2041 120 4 0 chr9 73499089 73499364 -44363263 + AluSx SINE Alu 1 276 -36 180 0 0 0 chr9 73499369 73499389 -44363238 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 3989 193 83 8 chr9 73499585 73500387 -44362240 + MER21B LTR ERV1 1 863 0 763 183 83 30 chr9 73500397 73500566 -44362061 + MER21B-int LTR ERV1 3 180 -4011 3718 108 70 6 chr9 73500569 73500667 -44361960 - LTR19B LTR ERV1 0 580 490 2321 101 0 3 chr9 73500667 73500965 -44361662 - AluSx SINE Alu -15 297 1 3718 108 70 6 chr9 73500965 73501411 -44361216 - LTR19B LTR ERV1 -90 490 1 773 241 12 12 chr9 73501418 73501584 -44361043 - AluJb SINE Alu -12 300 135 987 80 0 0 chr9 73501584 73501709 -44360918 + MER4B-int LTR ERV1 3200 3324 -3434 1709 153 10 47 chr9 73502244 73502544 -44360083 + AluJo SINE Alu 1 289 -23 7488 197 42 34 chr9 73502572 73504180 -44358447 + MER4B-int LTR ERV1 301 1922 -2269 6914 194 75 29 chr9 73504185 73504227 -44358400 + MER4B-int LTR ERV1 2160 2199 -1992 2259 89 31 0 chr9 73504227 73504519 -44358108 + AluSc SINE Alu 1 301 -8 6914 194 75 29 chr9 73504519 73506046 -44356581 + MER4B-int LTR ERV1 2199 3802 -389 2005 118 50 0 chr9 73506123 73506402 -44356225 - AluSx SINE Alu -17 295 3 294 116 0 0 chr9 73506413 73506456 -44356171 - Alu SINE Alu -11 291 249 2353 108 0 0 chr9 73506557 73506854 -44355773 - AluSx SINE Alu -15 297 1 393 207 114 25 chr9 73507372 73507513 -44355114 - L1ME LINE L1 -359 5803 5656 2284 114 0 6 chr9 73507533 73507848 -44354779 + AluSq SINE Alu 1 313 0 1943 108 66 25 chr9 73507987 73508273 -44354354 - AluSx SINE Alu -14 298 1 226 321 36 0 chr9 73508395 73508479 -44354148 + MIR SINE MIR 78 164 -98 1276 247 26 37 chr9 73508495 73508876 -44353751 + MLT2C1 LTR ERVL 2 378 -19 439 97 29 39 chr9 73509141 73509244 -44353383 + GA-rich Low_complexity Low_complexity 1 102 0 180 0 0 0 chr9 73509327 73509347 -44353280 + (TAA)n Simple_repeat Simple_repeat 3 22 0 380 180 7 108 chr9 73509491 73509508 -44353119 - L1MA10 LINE L1 0 6334 6318 835 184 190 59 chr9 73509508 73509813 -44352814 - L1ME1 LINE L1 -5 6161 5813 318 148 102 23 chr9 73509820 73509908 -44352719 - L1ME1 LINE L1 -770 5376 5282 2432 81 0 0 chr9 73512170 73512467 -44350160 + AluY SINE Alu 1 297 -14 271 167 19 0 chr9 73512489 73512543 -44350084 + MER116 DNA Mariner 26 80 0 2219 119 0 0 chr9 73512861 73513155 -44349472 - AluSg SINE Alu -16 294 1 2003 156 7 0 chr9 73513178 73513479 -44349148 - AluJb SINE Alu -9 303 1 515 277 116 54 chr9 73513761 73514262 -44348365 + L1ME4a LINE L1 5385 5916 -205 756 256 24 9 chr9 73514267 73514478 -44348149 + L1M2 LINE L1 2465 2678 -4171 3761 220 28 46 chr9 73514530 73514941 -44347686 + L1M4c LINE L1 2027 2444 -3938 2112 142 3 0 chr9 73514941 73515252 -44347375 + AluSx SINE Alu 1 312 0 3761 220 28 46 chr9 73515252 73516076 -44346551 + L1M4c LINE L1 2444 3274 -3108 1962 133 0 61 chr9 73516076 73516406 -44346221 + AluJb SINE Alu 1 310 -2 595 88 167 0 chr9 73516448 73516550 -44346077 + L1MA7 LINE L1 6172 6290 -1 435 153 0 0 chr9 73516648 73516720 -44345907 + L1MA9 LINE L1 6239 6310 -2 2256 96 24 0 chr9 73518114 73518406 -44344221 - AluSc SINE Alu -10 299 1 438 69 0 0 chr9 73518406 73518464 -44344163 + (TTTA)n Simple_repeat Simple_repeat 4 61 0 2154 114 0 0 chr9 73518465 73518745 -44343882 - AluSg SINE Alu -30 280 1 384 187 331 18 chr9 73520010 73520176 -44342451 + MER20 DNA MER1_type 2 219 0 22 0 0 0 chr9 73520250 73520272 -44342355 + AT_rich Low_complexity Low_complexity 1 22 0 1038 157 6 22 chr9 73520272 73520450 -44342177 - AluJb SINE Alu -11 301 127 1879 159 3 7 chr9 73520831 73521120 -44341507 - AluSx SINE Alu -24 288 1 592 172 177 61 chr9 73521469 73521738 -44340889 + MLT1E1 LTR MaLR 353 593 0 561 159 53 0 chr9 73522276 73522389 -44340238 + L1MB4 LINE L1 6047 6165 -15 5236 227 62 43 chr9 73522580 73524072 -44338555 + HERVL68 LTR ERVL 346 1976 -1061 2435 53 13 13 chr9 73524072 73524372 -44338255 - AluY SINE Alu -11 300 1 5236 227 62 43 chr9 73524372 73524781 -44337846 + HERVL68 LTR ERVL 1976 2376 -661 243 0 0 0 chr9 73524785 73524812 -44337815 + (A)n Simple_repeat Simple_repeat 1 27 0 735 231 61 22 chr9 73524812 73525041 -44337586 - MER31B LTR ERV1 -4 462 225 296 194 16 0 chr9 73526991 73527053 -44335574 + MIR SINE MIR 111 173 -89 382 172 58 0 chr9 73527419 73527506 -44335121 - MIR SINE MIR -111 151 60 436 191 144 117 chr9 73527861 73528049 -44334578 - MER31B LTR ERV1 -244 222 30 579 186 42 17 chr9 73529128 73529246 -44333381 + FLAM_A SINE Alu 1 121 -12 661 185 9 0 chr9 73529698 73529806 -44332821 - FLAM_A SINE Alu -23 119 11 15668 147 21 5 chr9 73530115 73532737 -44329890 + L1P LINE L1 2583 5245 -901 812 322 60 0 chr9 73532770 73533105 -44329522 - HERVL-D LTR ERVL -5296 358 4 1164 171 34 38 chr9 73533156 73533382 -44329245 - MLT2D LTR ERVL -151 263 39 279 125 89 0 chr9 73533382 73533433 -44329194 - MLT2D LTR ERVL 0 414 367 229 258 34 0 chr9 73533453 73533542 -44329085 + (TTTA)n Simple_repeat Simple_repeat 2 93 0 1115 295 54 41 chr9 73533542 73534027 -44328600 - MLT2B3 LTR ERVL -63 491 1 593 263 6 6 chr9 73534071 73534250 -44328377 - L1MEc LINE L1 -3595 2620 2442 1534 304 86 40 chr9 73534287 73535451 -44327176 - L1MEc LINE L1 -4140 2256 1008 2476 80 0 0 chr9 73535451 73535753 -44326874 - AluY SINE Alu -9 302 1 1534 304 86 40 chr9 73535753 73536077 -44326550 - L1MEc LINE L1 -5388 1008 700 2021 216 112 87 chr9 73536346 73537138 -44325489 + MER21B LTR ERV1 1 812 -51 391 284 50 35 chr9 73537238 73537439 -44325188 - L1MEc LINE L1 -6101 295 92 200 304 176 8 chr9 73537506 73537631 -44324996 - L2 LINE L2 -616 2698 2553 22 0 0 0 chr9 73537810 73537832 -44324795 + AT_rich Low_complexity Low_complexity 1 22 0 1378 253 52 39 chr9 73538948 73539130 -44323497 - L1 LINE L1 -3200 2946 2768 2287 105 0 3 chr9 73539130 73539425 -44323202 - AluSg SINE Alu -16 294 1 1378 253 52 39 chr9 73539425 73539708 -44322919 - L1 LINE L1 -3378 2768 2475 354 313 13 33 chr9 73539954 73540104 -44322523 + L2 LINE L2 3167 3313 0 1963 138 39 0 chr9 73540328 73540611 -44322016 - AluSq SINE Alu -19 294 1 2935 207 66 3 chr9 73541897 73542534 -44320093 - L1MC3 LINE L1 0 7785 7109 355 245 67 130 chr9 73544765 73544853 -44317774 + L1MC/D LINE L1 4382 4474 -1672 1733 166 3 7 chr9 73544853 73545137 -44317490 + AluJo SINE Alu 12 294 -18 355 245 67 130 chr9 73545137 73545555 -44317072 + L1MC/D LINE L1 4474 4856 -1290 1206 184 37 5 chr9 73546106 73546324 -44316303 + AluJb SINE Alu 86 310 -2 1622 174 54 10 chr9 73546531 73546829 -44315798 - AluJo SINE Alu -1 311 1 345 293 58 67 chr9 73546834 73547042 -44315585 - L1MC5 LINE L1 -530 7431 7226 226 255 39 39 chr9 73547117 73547219 -44315408 - L1MC5 LINE L1 -733 7228 7127 313 268 87 106 chr9 73547365 73547894 -44314733 + L1MC/D LINE L1 5279 5797 -2011 2353 91 0 0 chr9 73547909 73548232 -44314395 - AluSx SINE Alu 0 323 1 306 0 0 0 chr9 73548499 73548533 -44314094 + (TG)n Simple_repeat Simple_repeat 2 35 0 1424 255 127 48 chr9 73548613 73549251 -44313376 + L1MEc LINE L1 2176 2762 -3453 694 185 27 0 chr9 73549251 73549397 -44313230 + L1MA10 LINE L1 6180 6329 -5 1424 255 127 48 chr9 73549397 73549470 -44313157 + L1MEc LINE L1 2762 2828 -3387 2067 125 10 0 chr9 73549470 73549758 -44312869 + AluSx SINE Alu 1 291 -21 1424 255 127 48 chr9 73549758 73550393 -44312234 + L1MEc LINE L1 2828 3591 -2624 2190 114 7 0 chr9 73550675 73550972 -44311655 - AluSx SINE Alu -13 299 1 2023 152 0 0 chr9 73551266 73551568 -44311059 - AluJo SINE Alu -10 302 1 1187 160 80 9 chr9 73551703 73551916 -44310711 - MER77 LTR ERV1 -11 594 367 405 0 0 0 chr9 73551948 73551993 -44310634 + (TG)n Simple_repeat Simple_repeat 2 46 0 435 185 185 0 chr9 73551998 73552133 -44310494 - L1MC4a LINE L1 -1373 6435 6276 498 210 160 14 chr9 73552168 73552350 -44310277 - L1MC4a LINE L1 -1486 6322 6126 596 108 0 0 chr9 73552356 73552439 -44310188 + AluJ/FLAM SINE Alu 2 84 -228 1150 192 12 118 chr9 73552884 73553207 -44309420 - AluJo SINE Alu -18 294 6 2158 113 14 0 chr9 73553214 73553505 -44309122 - AluSx SINE Alu -16 296 2 183 129 0 0 chr9 73553604 73553635 -44308992 + (T)n Simple_repeat Simple_repeat 1 31 0 4719 76 84 0 chr9 73553810 73554455 -44308172 + L1PA4 LINE L1 5457 6155 0 5936 110 2 6 chr9 73554913 73555960 -44306667 + L1PA14 LINE L1 5102 6144 -17 210 370 26 42 chr9 73555971 73556163 -44306464 + L2 LINE L2 2688 2876 -438 2283 101 10 0 chr9 73556426 73556734 -44305893 + AluSx SINE Alu 2 312 0 742 227 62 107 chr9 73556734 73557183 -44305444 - LTR37B LTR ERV1 -30 438 10 756 240 71 18 chr9 73557271 73557538 -44305089 + Charlie2 DNA MER1_type 4 242 -2540 372 208 81 81 chr9 73557602 73557703 -44304924 + Charlie2 DNA MER1_type 2714 2817 -45 1561 163 57 18 chr9 73557703 73557868 -44304759 - AluJo SINE Alu -15 297 115 210 71 0 0 chr9 73557868 73557896 -44304731 + (TTG)n Simple_repeat Simple_repeat 3 30 0 1561 163 57 18 chr9 73557896 73558013 -44304614 - AluJo SINE Alu -197 115 4 372 208 81 81 chr9 73558013 73558060 -44304567 + Charlie2 DNA MER1_type 2816 2862 0 214 306 83 0 chr9 73558567 73558639 -44303988 + L2 LINE L2 3146 3223 -49 271 338 150 0 chr9 73558645 73558858 -44303769 - MIR SINE MIR 0 262 18 218 284 135 0 chr9 73559590 73559664 -44302963 + MIR3 SINE MIR 85 168 -40 2168 140 0 0 chr9 73560253 73560561 -44302066 - AluSx SINE Alu -4 308 1 420 245 29 0 chr9 73560905 73561007 -44301620 + MER81 DNA DNA 4 108 -6 443 294 59 0 chr9 73561564 73561751 -44300876 - MIR SINE MIR -15 247 50 1757 146 48 0 chr9 73561876 73562144 -44300483 - AluJo SINE Alu -31 281 1 2273 98 10 3 chr9 73562158 73562465 -44300162 - AluSq SINE Alu -4 309 1 203 330 75 0 chr9 73562546 73562640 -44299987 - L2 LINE L2 -13 3300 3200 1750 177 14 28 chr9 73563653 73564014 -44298613 - L1MB5 LINE L1 -6 6168 5813 1724 144 46 54 chr9 73564016 73564065 -44298562 - L1MB3 LINE L1 -7 6176 6128 2136 83 0 83 chr9 73564065 73564389 -44298238 - AluSx SINE Alu -15 297 1 1724 144 46 54 chr9 73564389 73564707 -44297920 - L1MB3 LINE L1 -55 6128 5812 526 87 0 0 chr9 73564707 73564776 -44297851 + Alu SINE Alu 222 290 -20 943 157 99 5 chr9 73564776 73564967 -44297660 - L1MB3 LINE L1 -707 5473 5265 725 182 0 0 chr9 73565012 73565133 -44297494 - MSTC LTR MaLR -4 424 304 1885 167 3 0 chr9 73565309 73565614 -44297013 - AluJb SINE Alu -6 306 1 2220 106 0 3 chr9 73565973 73566279 -44296348 + AluSp SINE Alu 1 305 0 2109 89 0 67 chr9 73566380 73566693 -44295934 + AluSx SINE Alu 1 292 -20 943 94 0 0 chr9 73566693 73566810 -44295817 - AluSq/x SINE Alu -194 118 2 2287 91 0 16 chr9 73566834 73567141 -44295486 - AluSc SINE Alu -7 302 1 25 0 0 0 chr9 73567152 73567177 -44295450 + AT_rich Low_complexity Low_complexity 1 25 0 2164 101 3 10 chr9 73567466 73567763 -44294864 - AluSg SINE Alu -15 295 1 2552 57 0 0 chr9 73567832 73568129 -44294498 + AluY SINE Alu 1 297 -14 2294 114 0 0 chr9 73568545 73568843 -44293784 + AluSx SINE Alu 1 298 -14 356 232 39 119 chr9 73569941 73569982 -44292645 - L1ME4a LINE L1 -223 5898 5855 1941 126 7 30 chr9 73569982 73570284 -44292343 - AluSx SINE Alu -17 295 1 356 232 39 119 chr9 73570284 73570362 -44292265 - L1ME4a LINE L1 -266 5855 5772 1555 193 3 17 chr9 73570362 73570657 -44291970 + AluJo SINE Alu 1 291 -21 2345 96 0 0 chr9 73570661 73570953 -44291674 + AluSg SINE Alu 1 292 -18 356 232 39 119 chr9 73570953 73571112 -44291515 - L1ME4a LINE L1 -352 5769 5637 1949 142 10 14 chr9 73571885 73572181 -44290446 - AluSx SINE Alu -17 295 1 265 198 33 11 chr9 73572445 73572536 -44290091 + (TA)n Simple_repeat Simple_repeat 1 93 0 206 295 51 0 chr9 73572724 73572802 -44289825 + L2 LINE L2 2978 3059 -213 1109 56 0 0 chr9 73572868 73572994 -44289633 - AluSq/x SINE Alu -186 126 1 1772 265 95 19 chr9 73573322 73573914 -44288713 + Zaphod DNA AcHobo 1 637 -3394 488 243 168 5 chr9 73573917 73573971 -44288656 + Zaphod DNA AcHobo 3598 3642 -389 2339 86 0 0 chr9 73573971 73574262 -44288365 + AluSg SINE Alu 1 291 -19 488 243 168 5 chr9 73574262 73574392 -44288235 + Zaphod DNA AcHobo 3642 3812 -219 743 200 8 0 chr9 73574396 73574526 -44288101 - FLAM_A SINE Alu -6 136 6 1699 140 4 19 chr9 73574588 73574852 -44287775 + AluSx SINE Alu 23 282 -30 644 253 33 0 chr9 73574887 73575037 -44287590 + MER115 DNA AcHobo 539 693 0 1651 98 119 50 chr9 73575056 73575333 -44287294 - AluSg SINE Alu -14 296 1 2212 99 10 0 chr9 73575347 73575649 -44286978 - AluY SINE Alu -6 305 1 2523 77 0 0 chr9 73575872 73576183 -44286444 + AluY SINE Alu 1 311 0 186 279 0 0 chr9 73576499 73576585 -44286042 + CT-rich Low_complexity Low_complexity 3 88 0 1762 186 75 57 chr9 73577695 73578228 -44284399 - LTR26E LTR ERV1 -12 610 3 448 157 0 0 chr9 73578461 73578531 -44284096 + AluS SINE Alu 23 92 -221 * 711 144 8 0 chr9 73578525 73578643 -44283984 + AluJo/FRAM SINE Alu 179 297 -15 211 204 82 102 chr9 73578644 73578742 -44283885 - L2 LINE L2 -19 3294 3199 2321 84 0 3 chr9 73578874 73579159 -44283468 + AluSq SINE Alu 1 284 -29 561 154 27 9 chr9 73579180 73579290 -44283337 + L1MD2 LINE L1 4742 4853 -1293 3012 128 48 0 chr9 73579291 73579791 -44282836 - L1MB2 LINE L1 -2 6169 5646 4588 166 49 15 chr9 73579791 73580580 -44282047 + MER21B LTR ERV1 1 816 -47 1116 182 4 61 chr9 73580619 73580802 -44281825 - L1MC/D LINE L1 -512 5659 5513 4528 101 3 20 chr9 73580802 73580925 -44281702 - MER41B LTR ERV1 0 635 511 2273 98 0 26 chr9 73580925 73581230 -44281397 + AluSg SINE Alu 1 297 -13 4528 101 3 20 chr9 73581230 73581752 -44280875 - MER41B LTR ERV1 -124 511 1 1116 182 4 61 chr9 73581752 73581819 -44280808 - L1MC/D LINE L1 -658 5513 5444 * 2834 220 59 39 chr9 73581817 73582397 -44280230 + L1MD2 LINE L1 4844 5411 -948 1704 154 6 71 chr9 73582397 73582721 -44279906 + AluJo SINE Alu 1 303 -9 2834 220 59 39 chr9 73582721 73582947 -44279680 + L1MD2 LINE L1 5411 5631 -728 2578 65 0 0 chr9 73582947 73583255 -44279372 + AluY SINE Alu 1 308 -3 2834 220 59 39 chr9 73583255 73583682 -44278945 + L1MD2 LINE L1 5631 6105 -254 1835 156 7 0 chr9 73583706 73584011 -44278616 + AluJb SINE Alu 1 307 0 834 199 111 82 chr9 73584037 73584350 -44278277 - Charlie1b DNA MER1_type -2333 428 99 2069 114 45 0 chr9 73584350 73584639 -44277988 - AluSq SINE Alu -11 302 1 834 199 111 82 chr9 73584639 73584741 -44277886 - Charlie1b DNA MER1_type -2662 99 1 1541 86 45 32 chr9 73584897 73585117 -44277510 - AluSg/x SINE Alu -5 307 85 2345 107 0 0 chr9 73585220 73585518 -44277109 + AluSx SINE Alu 1 298 -14 2125 92 3 63 chr9 73585608 73585923 -44276704 - AluSx SINE Alu -16 296 1 2258 99 0 3 chr9 73586024 73586330 -44276297 - AluSp SINE Alu 0 305 1 1891 167 3 0 chr9 73586689 73586994 -44275633 + AluJb SINE Alu 1 306 -6 756 165 0 0 chr9 73587170 73587291 -44275336 + MSTC LTR MaLR 304 424 -4 943 157 99 5 chr9 73587336 73587527 -44275100 + L1MB3 LINE L1 5265 5473 -707 518 101 0 0 chr9 73587527 73587596 -44275031 - Alu SINE Alu -20 292 224 1692 156 46 48 chr9 73587596 73587914 -44274713 + L1MB3 LINE L1 5812 6130 -53 2149 85 0 82 chr9 73587914 73588243 -44274384 + AluSx SINE Alu 1 302 -10 1692 156 46 48 chr9 73588243 73588297 -44274330 + L1MB3 LINE L1 6130 6183 0 462 190 0 50 chr9 73588289 73588410 -44274217 + L1MB5 LINE L1 5813 5927 -247 * 253 197 91 0 chr9 73588531 73588597 -44274030 + L1MDa LINE L1 2171 2242 -4298 * 3150 234 116 14 chr9 73588580 73589418 -44273209 + L1MDa LINE L1 1 923 -5617 844 120 0 16 chr9 73589424 73589549 -44273078 + AluSp/q SINE Alu 182 304 -9 298 200 0 0 chr9 73589611 73589661 -44272966 - Alu SINE Alu -6 295 246 5313 149 61 18 chr9 73589761 73591106 -44271521 - L1PBb LINE L1 -4176 2028 616 2042 121 3 0 chr9 73591509 73591791 -44270836 - AluY SINE Alu -28 283 1 345 214 130 10 chr9 73591791 73591979 -44270648 + L1P5 LINE L1 5262 5437 -714 878 277 52 11 chr9 73591986 73592257 -44270370 + ERVL LTR ERVL 4741 5022 -742 843 260 68 36 chr9 73592258 73592623 -44270004 - L1M4 LINE L1 -2374 3772 3396 2439 79 0 0 chr9 73592729 73593021 -44269606 - AluSg SINE Alu -18 292 1 2267 78 3 10 chr9 73593227 73593521 -44269106 + AluSx SINE Alu 1 292 -20 1238 89 0 0 chr9 73593624 73593782 -44268845 + AluSg/x SINE Alu 147 304 -8 1486 79 16 0 chr9 73594054 73594243 -44268384 + AluSp SINE Alu 1 192 -121 331 221 206 66 chr9 73594539 73594614 -44268013 - MLT1L LTR MaLR -208 303 240 1503 198 7 0 chr9 73594614 73594887 -44267740 + AluJb SINE Alu 4 278 -34 331 221 206 66 chr9 73594887 73595086 -44267541 - MLT1L LTR MaLR -271 240 1 1890 79 86 18 chr9 73595353 73595632 -44266995 + AluSp SINE Alu 1 298 -15 245 314 124 7 chr9 73595652 73595789 -44266838 + L1MC/D LINE L1 5675 5827 -1981 2439 90 0 0 chr9 73595789 73596100 -44266527 + AluY SINE Alu 1 311 0 666 246 73 3 chr9 73596106 73596394 -44266233 + L1M4 LINE L1 3047 3354 -2792 2219 106 0 3 chr9 73596582 73596888 -44265739 - AluSp SINE Alu 0 305 1 1782 164 3 13 chr9 73597247 73597546 -44265081 + AluSx SINE Alu 1 296 -16 994 153 0 43 chr9 73597546 73597709 -44264918 + AluSg/x SINE Alu 134 289 -23 4004 152 6 26 chr9 73598178 73598789 -44263838 + L1P LINE L1 4475 5070 -1076 2338 98 0 22 chr9 73598789 73599104 -44263523 - AluSx SINE Alu -2 310 3 4004 152 6 26 chr9 73599104 73599221 -44263406 + L1P LINE L1 5070 5188 -958 225 140 200 0 chr9 73599967 73600017 -44262610 - AluSc SINE Alu -3 296 237 2051 143 52 23 chr9 73600018 73600402 -44262225 + MER61B LTR ERV1 1 395 -30 1567 146 13 4 chr9 73600413 73600652 -44261975 - AluJb SINE Alu -71 241 1 306 153 16 194 chr9 73600653 73600777 -44261850 - L1MC/D LINE L1 -2123 5685 5584 357 211 109 34 chr9 73600786 73600802 -44261825 - L1MA10 LINE L1 -1 6333 6318 1044 181 72 23 chr9 73600802 73601023 -44261604 - L1ME1 LINE L1 -4 6162 5931 2216 74 7 0 chr9 73601123 73601408 -44261219 + PABL_A-int LTR ERV1 4001 4287 -1299 1360 68 0 0 chr9 73601412 73601574 -44261053 + AluSc SINE Alu 132 293 -16 5060 81 0 2 chr9 73601574 73602216 -44260411 + PABL_A-int LTR ERV1 4375 5015 0 1124 117 111 0 chr9 73602216 73602387 -44260240 + PABL_A LTR ERV1 1 190 -470 1224 132 0 0 chr9 73602387 73602561 -44260066 - AluSg/x SINE Alu -10 300 127 2600 65 12 15 chr9 73602564 73602903 -44259724 + PABL_A LTR ERV1 178 515 -145 2270 92 10 0 chr9 73602903 73603197 -44259430 - AluSx SINE Alu -15 297 1 959 202 10 0 chr9 73603255 73603448 -44259179 + L1M4 LINE L1 4147 4341 -1805 1018 199 45 20 chr9 73603564 73603576 -44259051 + L1ME LINE L1 1028 1038 -5504 1964 122 3 14 chr9 73603576 73603863 -44258764 - AluSx SINE Alu -28 284 1 1018 199 45 20 chr9 73603863 73604142 -44258485 + L1ME LINE L1 1038 1326 -5216 1021 185 72 27 chr9 73604142 73604397 -44258230 + MSTD LTR MaLR 91 396 0 1019 231 39 32 chr9 73604402 73604713 -44257914 + L1ME LINE L1 4595 4907 -1737 988 162 23 0 chr9 73604722 73604895 -44257732 + FAM SINE Alu 1 47 -2 1809 212 109 2 chr9 73604901 73605368 -44257259 + L1ME LINE L1 4914 5430 -1214 841 204 30 35 chr9 73605373 73605574 -44257053 + L1ME LINE L1 6070 6269 -395 2080 118 6 34 chr9 73605574 73605895 -44256732 + AluSx SINE Alu 1 312 0 820 247 26 77 chr9 73605996 73606373 -44256254 + L1M4 LINE L1 1862 2219 -4606 691 318 118 11 chr9 73606401 73606775 -44255852 - LTR16B LTR ERVL 0 464 51 572 249 59 18 chr9 73606844 73607013 -44255614 + L1M4 LINE L1 2287 2462 -4363 2209 100 0 31 chr9 73607013 73607332 -44255295 + AluSc SINE Alu 1 309 0 1826 216 121 33 chr9 73607336 73607906 -44254721 - L1M4c LINE L1 -5455 929 310 2601 71 0 0 chr9 73608569 73608879 -44253748 + AluSg SINE Alu 1 310 0 2282 98 14 0 chr9 73608895 73609190 -44253437 + AluSp SINE Alu 1 299 -14 567 189 23 23 chr9 73609580 73609712 -44252915 - AluSc SINE Alu -174 135 4 721 142 74 0 chr9 73609744 73609892 -44252735 - L1MA7 LINE L1 -3 6288 6130 1690 155 7 11 chr9 73609896 73610167 -44252460 - AluSx SINE Alu -12 300 31 687 158 26 9 chr9 73610171 73610285 -44252342 - pTR5 LTR ERV1 -2271 167 52 264 188 0 47 chr9 73610285 73610349 -44252278 - LTR30 LTR ERV1 -98 624 564 699 124 25 196 chr9 73610357 73610619 -44252008 - LTR12 LTR ERV1 -424 1523 100 277 211 0 0 chr9 73610619 73610671 -44251956 - LTR30 LTR ERV1 -670 52 1 * 281 200 114 0 chr9 73610671 73610705 -44251922 - AluS SINE Alu -261 42 1 1457 135 79 85 chr9 73610715 73611055 -44251572 - L1MA7 LINE L1 -172 6119 5782 21 0 0 0 chr9 73611055 73611076 -44251551 + AT_rich Low_complexity Low_complexity 1 21 0 3125 142 24 15 chr9 73611115 73611665 -44250962 - L1MA7 LINE L1 -500 5791 5238 582 138 0 0 chr9 73611665 73611752 -44250875 - Charlie1 DNA MER1_type -602 2159 2073 1141 108 0 13 chr9 73611753 73611910 -44250717 - AluSg/x SINE Alu 0 310 156 1080 155 181 26 chr9 73611910 73612175 -44250452 - Charlie1 DNA MER1_type -685 2076 1771 650 144 99 0 chr9 73612183 73612294 -44250333 + FLAM_C SINE Alu 2 123 -20 2474 208 57 116 chr9 73612398 73612827 -44249800 - L1MDa LINE L1 -4397 2143 1690 453 86 0 0 chr9 73612827 73612885 -44249742 - U6 snRNA snRNA -3 104 47 2199 86 0 0 chr9 73612885 73613153 -44249474 - AluSx SINE Alu -44 268 1 2474 208 57 116 chr9 73613153 73613487 -44249140 - L1MDa LINE L1 -4849 1691 1413 2379 108 0 0 chr9 73613487 73613793 -44248834 - AluSx SINE Alu -6 306 1 2474 208 57 116 chr9 73613793 73614170 -44248457 - L1MDa LINE L1 -5127 1413 1015 419 167 0 0 chr9 73614535 73614607 -44248020 + L1P LINE L1 4322 4393 -1753 14092 104 1 5 chr9 73614755 73616681 -44245946 - L1P LINE L1 -4225 1921 5 1002 210 68 12 chr9 73616665 73616783 -44245844 + L1ME LINE L1 5559 5669 -497 * 2164 107 0 20 chr9 73616783 73617081 -44245546 + AluSq SINE Alu 1 292 -21 1002 210 68 12 chr9 73617081 73617210 -44245417 + L1ME LINE L1 5669 5820 -346 4208 149 21 3 chr9 73617212 73617885 -44244742 - MER6 DNA MER2_type 0 865 181 546 57 0 0 chr9 73617985 73618055 -44244572 + (TTCC)n Simple_repeat Simple_repeat 3 72 0 264 128 0 0 chr9 73618055 73618094 -44244533 - AluSp/q SINE Alu -16 287 249 1757 91 0 0 chr9 73618096 73618306 -44244321 - AluSx SINE Alu -102 210 1 2893 228 156 50 chr9 73618307 73618382 -44244245 - L1MDa LINE L1 -4047 2493 2427 2260 99 6 13 chr9 73618382 73618695 -44243932 - AluSq SINE Alu 0 313 3 2893 228 156 50 chr9 73618695 73619190 -44243437 - L1MDa LINE L1 -4113 2427 1986 1947 166 0 16 chr9 73619190 73619504 -44243123 + AluJb SINE Alu 1 309 -3 2893 228 156 50 chr9 73619504 73620286 -44242341 - L1MDa LINE L1 -4554 1986 997 685 226 79 24 chr9 73620267 73620519 -44242108 - L1MDb LINE L1 -5252 1291 1026 * 938 242 33 48 chr9 73621249 73621580 -44241047 - L1MDb LINE L1 -6110 430 105 22 0 0 0 chr9 73622790 73622812 -44239815 + AT_rich Low_complexity Low_complexity 1 22 0 270 0 0 0 chr9 73623319 73623349 -44239278 + (CA)n Simple_repeat Simple_repeat 2 31 0 1306 249 20 32 chr9 73623387 73623789 -44238838 + L1M4 LINE L1 4617 5013 -1133 4161 250 37 10 chr9 73623887 73625300 -44237327 + L1M4 LINE L1 2952 4402 -1744 922 220 33 33 chr9 73625302 73625575 -44237052 + L1ME LINE L1 4098 4370 -1776 2318 63 0 47 chr9 73625814 73626131 -44236496 - AluY SINE Alu -9 302 1 367 316 0 0 chr9 73626173 73626268 -44236359 + L2 LINE L2 3215 3309 -4 272 231 90 15 chr9 73626549 73626683 -44235944 + L1ME LINE L1 5653 5796 -325 558 272 118 70 chr9 73627051 73627551 -44235076 - L1M4 LINE L1 -2197 3949 3426 23 0 0 0 chr9 73627766 73627789 -44234838 + AT_rich Low_complexity Low_complexity 1 23 0 13406 201 26 20 chr9 73628131 73629372 -44233255 - L1PB3 LINE L1 -3 6151 4919 1942 133 58 36 chr9 73629372 73629702 -44232925 + MER1B DNA MER1_type 1 337 0 13406 201 26 20 chr9 73629702 73633145 -44229482 - L1PB3 LINE L1 -1235 4919 1434 1725 109 17 4 chr9 73633239 73633477 -44229150 + AluSc SINE Alu 1 241 -68 2584 233 64 25 chr9 73634036 73634956 -44227671 - L1ME1 LINE L1 -4 6162 5195 3635 203 78 11 chr9 73634994 73636380 -44226247 - L1MD2 LINE L1 -1 7994 4827 4128 247 65 17 chr9 73636384 73638054 -44224573 - L1MD2 LINE L1 -1433 4713 2965 226 403 52 16 chr9 73638408 73638599 -44224028 - L2 LINE L2 -280 3033 2836 1016 245 159 10 chr9 73638716 73639230 -44223397 + L1MC4a LINE L1 5576 6166 -1642 1220 245 125 38 chr9 73639272 73639777 -44222850 + L1MDa LINE L1 16 732 -5808 2476 78 7 0 chr9 73639782 73640089 -44222538 + AluSq SINE Alu 1 309 -4 1573 252 97 6 chr9 73640089 73640767 -44221860 + L1MDa LINE L1 2688 3427 -3113 1005 181 0 23 chr9 73640770 73640947 -44221680 + AluJo SINE Alu 1 173 -139 1447 255 76 0 chr9 73640948 73641567 -44221060 + L1 LINE L1 2813 3478 -2668 696 176 26 13 chr9 73641562 73641715 -44220912 + L1MC3 LINE L1 6724 6878 -907 * 1858 149 70 65 chr9 73641715 73642145 -44220482 - MSTB1 LTR MaLR 0 432 1 5307 211 90 61 chr9 73642145 73642295 -44220332 - MSTB1-int LTR MaLR 0 1651 1507 2076 115 42 0 chr9 73642295 73642583 -44220044 + AluSx SINE Alu 1 300 -12 5307 211 90 61 chr9 73642583 73644037 -44218590 - MSTB1-int LTR MaLR -144 1507 1 1327 217 91 30 chr9 73644039 73644330 -44218297 - MSTB2 LTR MaLR -2 455 128 2205 120 53 8 chr9 73644330 73644689 -44217938 - THE1C LTR MaLR 0 375 1 1327 217 91 30 chr9 73644689 73644826 -44217801 - MSTB2 LTR MaLR -329 128 1 937 145 87 0 chr9 73644826 73645033 -44217594 + L1MC3 LINE L1 6874 7098 -687 259 212 59 24 chr9 73645034 73645119 -44217508 + MLT1F1 LTR MaLR 37 124 -443 1837 204 77 59 chr9 73645125 73645685 -44216942 + L1MC3 LINE L1 7195 7764 -21 3773 210 96 17 chr9 73645690 73647063 -44215564 + L1MDa LINE L1 1346 2828 -3712 2268 96 0 17 chr9 73647067 73647369 -44215258 - AluY SINE Alu -14 297 1 266 218 0 0 chr9 73647417 73647472 -44215155 - L1MD2 LINE L1 -110 6249 6195 509 217 96 30 chr9 73647475 73647641 -44214986 - L1MD2 LINE L1 -219 6140 5964 2902 236 102 20 chr9 73647644 73648956 -44213671 - L1MDa LINE L1 -4980 1560 32 947 244 94 25 chr9 73648977 73649424 -44213203 - L1MEc LINE L1 -3285 2930 2453 258 255 49 91 chr9 73649435 73649698 -44212929 - L1MEc LINE L1 -4485 1911 1660 497 255 215 13 chr9 73649855 73650157 -44212470 + L1ME3A LINE L1 5801 6163 -7 33 46 0 15 chr9 73650463 73650492 -44212135 + AT_rich Low_complexity Low_complexity 1 29 -35 2117 132 0 0 chr9 73650492 73650779 -44211848 - AluSg SINE Alu -23 287 1 33 46 0 15 chr9 73650779 73650814 -44211813 + AT_rich Low_complexity Low_complexity 29 64 0 227 220 17 0 chr9 73650913 73650972 -44211655 + L1M4 LINE L1 94 153 -6389 274 283 98 29 chr9 73651340 73651513 -44211114 + L1M4 LINE L1 703 887 -5655 1102 230 38 60 chr9 73651547 73651666 -44210961 + L1M4 LINE L1 875 995 -5547 1640 186 0 46 chr9 73651666 73651801 -44210826 + AluJo SINE Alu 1 141 -171 2276 73 6 35 chr9 73651801 73652117 -44210510 + AluY SINE Alu 1 307 -4 1640 186 0 46 chr9 73652117 73652288 -44210339 + AluJo SINE Alu 141 293 -19 1102 230 38 60 chr9 73652288 73652514 -44210113 + L1M4 LINE L1 995 1224 -5318 878 135 8 8 chr9 73652514 73652647 -44209980 + FLAM_C SINE Alu 1 133 0 1102 230 38 60 chr9 73652647 73652669 -44209958 + L1M4 LINE L1 1224 1245 -5297 2095 110 24 14 chr9 73652669 73652961 -44209666 + AluSx SINE Alu 1 295 -17 1102 230 38 60 chr9 73652961 73653233 -44209394 + L1M4 LINE L1 1245 1512 -5030 2091 80 7 4 chr9 73653248 73653523 -44209104 + AluSq SINE Alu 1 276 -37 414 100 0 0 chr9 73654591 73654651 -44207976 + (T)n Simple_repeat Simple_repeat 1 60 0 1514 90 5 5 chr9 73654661 73654872 -44207755 - AluSq SINE Alu -102 211 1 218 330 122 39 chr9 73656068 73656298 -44206329 + MIR SINE MIR 14 262 0 186 302 93 22 chr9 73656331 73656470 -44206157 - MIR SINE MIR -67 195 47 1549 199 7 0 chr9 73657897 73658178 -44204449 - AluSx SINE Alu -29 283 1 2279 112 0 0 chr9 73659051 73659345 -44203282 - AluSg SINE Alu -16 294 1 824 199 0 7 chr9 73659877 73660028 -44202599 - FAM SINE Alu -20 165 16 817 253 0 0 chr9 73660138 73660312 -44202315 + FAM SINE Alu 1 174 -1 4697 105 11 9 chr9 73664103 73664844 -44197783 - L1PB2 LINE L1 -13 6138 5397 3882 171 68 21 chr9 73665594 73666486 -44196141 - L1MA4 LINE L1 -8 7711 6778 879 216 12 12 chr9 73666486 73666648 -44195979 - AluJb SINE Alu -18 294 133 1449 202 23 3 chr9 73666649 73667000 -44195627 - L1MA4 LINE L1 -784 6781 6424 806 122 0 72 chr9 73667000 73667139 -44195488 - FLAM_C SINE Alu -9 134 6 2195 152 2 19 chr9 73667146 73667568 -44195059 - L1MA4 LINE L1 -1133 6432 6018 * 7839 167 21 61 chr9 73667559 73669280 -44193347 - L1MA4 LINE L1 -5677 1888 237 207 0 0 0 chr9 73669387 73669410 -44193217 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1126 165 14 14 chr9 73671429 73671641 -44190986 + LTR22 LTR ERVK 61 272 -237 6009 85 19 16 chr9 73671909 73672851 -44189776 + L1PB1 LINE L1 5206 6150 -1 22 70 0 0 chr9 73673180 73673223 -44189404 + AT_rich Low_complexity Low_complexity 1 43 0 275 333 92 11 chr9 73673989 73674163 -44188464 + MIR SINE MIR 21 208 -54 1794 158 0 24 chr9 73675450 73675748 -44186879 - AluJo SINE Alu -18 294 4 2285 103 54 68 chr9 73676560 73676929 -44185698 - THE1B LTR MaLR 0 364 1 12126 86 7 1 chr9 73676935 73678498 -44184129 - THE1B-int LTR MaLR -7 1573 1 2417 113 51 23 chr9 73678498 73678852 -44183775 - THE1B LTR MaLR 0 364 1 1423 196 3 62 chr9 73679011 73679333 -44183294 - AluJo SINE Alu -8 304 2 393 134 15 0 chr9 73679627 73679694 -44182933 + L1MB5 LINE L1 6101 6168 -6 11525 186 47 5 chr9 73680736 73682807 -44179820 - ERVL LTR ERVL -2255 3509 1351 1747 189 16 0 chr9 73682808 73683114 -44179513 + AluJo SINE Alu 1 311 -1 2123 144 23 6 chr9 73683125 73683478 -44179149 - MER31A LTR ERV1 0 485 127 5856 47 0 20 chr9 73683478 73683811 -44178816 - L1PA5 LINE L1 -2 6152 5814 2635 36 0 0 chr9 73683811 73684113 -44178514 - AluY SINE Alu -9 302 1 5856 47 0 20 chr9 73684113 73684477 -44178150 - L1PA5 LINE L1 -340 5814 5469 233 152 0 0 chr9 73685441 73685474 -44177153 + L1M3 LINE L1 5678 5710 -470 778 134 0 0 chr9 73685487 73685606 -44177021 - L1M4 LINE L1 -363 5811 5693 2141 85 46 0 chr9 73685988 73686270 -44176357 + AluSg1 SINE Alu 1 295 -14 715 216 7 7 chr9 73686288 73686441 -44176186 + L1ME2 LINE L1 6002 6154 -10 2732 143 61 22 chr9 73686531 73687118 -44175509 - L1MB4 LINE L1 -2 6177 5534 242 277 50 20 chr9 73687715 73687816 -44174811 - MLT1K LTR MaLR -416 172 69 1955 124 3 10 chr9 73688130 73688429 -44174198 + AluSp SINE Alu 1 297 -16 2209 76 3 30 chr9 73689078 73689380 -44173247 - AluSg SINE Alu -16 294 1 817 216 7 0 chr9 73689385 73689538 -44173089 - FRAM SINE Alu -22 154 1 378 0 0 0 chr9 73689538 73689580 -44173047 + (TG)n Simple_repeat Simple_repeat 2 43 0 14127 30 3 0 chr9 73689592 73691240 -44171387 - L1P LINE L1 -1050 5096 3444 799 262 87 5 chr9 73691811 73692017 -44170610 + MER58A DNA MER1_type 2 224 0 333 307 21 69 chr9 73692248 73692437 -44170190 + L1ME1 LINE L1 2870 3049 -3097 2319 85 24 3 chr9 73693140 73693434 -44169193 + AluY SINE Alu 1 300 -11 355 235 41 10 chr9 73693435 73693533 -44169094 - MER104 DNA Tc2 -39 141 41 2442 101 0 0 chr9 73694254 73694561 -44168066 + AluSx SINE Alu 1 307 -5 233 373 8 8 chr9 73697770 73697888 -44164739 + MLT1J2 LTR MaLR 18 135 -315 610 247 48 5 chr9 73699062 73699248 -44163379 - L1MCa LINE L1 -5280 1146 953 292 288 40 68 chr9 73699460 73699537 -44163090 + L1ME1 LINE L1 4842 4920 -1226 2438 74 0 0 chr9 73699537 73699836 -44162791 + AluY SINE Alu 2 300 -11 292 288 40 68 chr9 73699836 73699851 -44162776 + L1ME1 LINE L1 4920 4934 -1212 2027 149 43 25 chr9 73699851 73700219 -44162408 - THE1C LTR MaLR 0 375 1 292 288 40 68 chr9 73700219 73700347 -44162280 + L1ME1 LINE L1 4934 5057 -1089 1707 172 10 33 chr9 73700349 73700652 -44161975 + AluJo SINE Alu 1 296 -16 274 282 39 0 chr9 73700690 73700793 -44161834 + L1ME1 LINE L1 5317 5423 -747 1352 276 75 23 chr9 73700813 73701375 -44161252 + L1ME1 LINE L1 5569 6159 -7 230 338 113 6 chr9 73701504 73701664 -44160963 + MIR SINE MIR 84 260 -2 2032 191 23 28 chr9 73702374 73702771 -44159856 + MSTD LTR MaLR 2 396 0 2402 200 125 48 chr9 73704071 73704178 -44158449 - L1M4 LINE L1 -3104 3278 3181 1795 149 10 23 chr9 73704178 73704486 -44158141 - AluJo SINE Alu -8 304 1 2402 200 125 48 chr9 73704486 73705180 -44157447 - L1M4 LINE L1 -3201 3181 2541 2404 75 0 0 chr9 73705180 73705486 -44157141 - AluY SINE Alu -5 306 1 2402 200 125 48 chr9 73705486 73705570 -44157057 - L1M4 LINE L1 -3841 2541 2465 2158 128 3 0 chr9 73705570 73705875 -44156752 + AluSx SINE Alu 6 311 -1 2402 200 125 48 chr9 73705875 73706465 -44156162 - L1M4 LINE L1 -3917 2465 1681 357 24 0 0 chr9 73706465 73706507 -44156120 + (TG)n Simple_repeat Simple_repeat 1 42 0 4126 183 58 35 chr9 73706523 73708053 -44154574 - L1MA9 LINE L1 -81 6231 4664 1298 204 0 0 chr9 73708068 73708323 -44154304 + L1 LINE L1 3828 4082 -2064 755 201 59 0 chr9 73708325 73708494 -44154133 - L1MA9 LINE L1 -1439 4707 4529 * 1126 137 50 76 chr9 73708492 73708754 -44153873 - L1MA9 LINE L1 -279 6033 5779 * 8467 206 45 42 chr9 73708751 73711018 -44151609 - L1MA9 LINE L1 -1619 4527 2254 5010 195 18 0 chr9 73711019 73711895 -44150732 - MER54A LTR ERVL -2 899 8 243 0 0 0 chr9 73711895 73711922 -44150705 + (CA)n Simple_repeat Simple_repeat 2 28 0 277 211 0 0 chr9 73711925 73711982 -44150645 - L1M4c LINE L1 -3889 3280 3224 * 45391 33 2 6 chr9 73711973 73718153 -44144474 - L1PA3 LINE L1 0 6155 4 716 175 1 1 chr9 73718153 73718300 -44144327 - L1M4c LINE L1 -3928 3241 3095 * 1076 318 60 48 chr9 73718297 73719228 -44143399 - L1M4c LINE L1 -5786 1382 399 600 97 115 62 chr9 73719272 73719385 -44143242 - L1M4c LINE L1 -4762 1622 1504 302 114 0 0 chr9 73719385 73719429 -44143198 + MSTB LTR MaLR 1 44 -382 1095 176 11 11 chr9 73719483 73719671 -44142956 + MSTB LTR MaLR 31 218 -208 * 2298 116 3 3 chr9 73719656 73719974 -44142653 + THE1C LTR MaLR 58 375 0 7870 179 16 18 chr9 73719974 73721833 -44140794 + L1PA13 LINE L1 1033 2901 -3896 14397 190 29 3 chr9 73721841 73722546 -44140081 + L1PA13 LINE L1 3098 3784 -3030 258 32 0 0 chr9 73722546 73722577 -44140050 + (CA)n Simple_repeat Simple_repeat 2 32 0 14397 190 29 3 chr9 73722577 73725492 -44137135 + L1PA13 LINE L1 3784 6795 -19 39 68 0 0 chr9 73725509 73725583 -44137044 + AT_rich Low_complexity Low_complexity 1 74 0 267 354 10 0 chr9 73726349 73726448 -44136179 + L1MC/D LINE L1 5508 5607 -2201 1823 128 162 46 chr9 73726488 73726526 -44136101 - MER31A LTR ERV1 0 485 453 2857 127 26 17 chr9 73726526 73726945 -44135682 - MSTB LTR MaLR -3 423 1 1823 128 162 46 chr9 73726945 73727337 -44135290 - MER31A LTR ERV1 -32 453 5 2408 74 0 7 chr9 73727572 73727871 -44134756 - AluY SINE Alu -14 297 1 315 221 73 29 chr9 73728137 73728273 -44134354 + L1MC/D LINE L1 5687 5828 -1980 2989 253 83 14 chr9 73729577 73730789 -44131838 + L1MB3 LINE L1 2550 3845 -2301 2067 200 59 4 chr9 73730793 73731267 -44131360 + L1MB3 LINE L1 4903 5402 -744 444 202 48 0 chr9 73731267 73731371 -44131256 + MER74A LTR ERVL 1 109 -449 2056 117 24 3 chr9 73731756 73732047 -44130580 - AluSq SINE Alu -14 299 3 2327 92 0 52 chr9 73732152 73732480 -44130147 - AluY SINE Alu 0 311 1 2312 48 0 0 chr9 73732791 73733059 -44129568 + AluY SINE Alu 5 272 -39 269 204 61 0 chr9 73733342 73733391 -44129236 + MER58B DNA MER1_type 1 52 -289 812 204 0 0 chr9 73733391 73733523 -44129104 - FLAM_C SINE Alu -10 133 2 573 252 46 0 chr9 73733533 73733684 -44128943 + MER58B DNA MER1_type 169 326 -15 444 250 11 97 chr9 73733744 73733905 -44128722 + L1M4 LINE L1 2232 2405 -3741 2209 84 4 0 chr9 73733905 73734178 -44128449 + AluSg SINE Alu 1 274 -36 207 0 0 0 chr9 73734188 73734211 -44128416 + (CAA)n Simple_repeat Simple_repeat 2 24 0 444 250 11 97 chr9 73734211 73734287 -44128340 + L1M4 LINE L1 2414 2459 -3687 2636 223 46 20 chr9 73734310 73734585 -44128042 - MER82 DNA MER2_type -4 649 382 2393 88 0 0 chr9 73734585 73734882 -44127745 - AluSc SINE Alu -12 297 1 2636 223 46 20 chr9 73734882 73735198 -44127429 - MER82 DNA MER2_type -271 382 43 940 128 96 32 chr9 73735303 73735491 -44127136 + THE1C LTR MaLR 176 375 0 2579 188 34 2 chr9 73735491 73735991 -44126636 + L1MB3 LINE L1 5666 6181 -2 650 196 42 93 chr9 73735996 73736210 -44126417 + L1M4 LINE L1 3842 4044 -2102 600 207 24 115 chr9 73736224 73736432 -44126195 + MLT1A1 LTR MaLR 1 189 -176 963 263 29 10 chr9 73736502 73736814 -44125813 + L1M4 LINE L1 4076 4393 -1753 188 67 33 0 chr9 73736814 73736844 -44125783 + (GAAA)n Simple_repeat Simple_repeat 3 33 0 333 0 0 0 chr9 73736884 73736921 -44125706 + (TA)n Simple_repeat Simple_repeat 1 37 0 824 167 0 0 chr9 73737051 73737183 -44125444 + AluJb SINE Alu 168 299 -13 23 54 0 0 chr9 73737391 73737428 -44125199 + AT_rich Low_complexity Low_complexity 1 37 0 2545 62 0 0 chr9 73738520 73738827 -44123800 + AluSx SINE Alu 1 307 -5 236 286 234 13 chr9 73739857 73740011 -44122616 - MIR SINE MIR -55 207 20 470 169 97 24 chr9 73740260 73740384 -44122243 - Charlie5 DNA MER1_type -15 2597 2465 241 254 17 0 chr9 73740384 73740443 -44122184 - Charlie5 DNA MER1_type -2548 64 5 685 215 34 120 chr9 73740491 73740564 -44122063 + MER20 DNA MER1_type 7 85 -134 1881 124 0 35 chr9 73740564 73740854 -44121773 - AluSx SINE Alu -32 280 1 685 215 34 120 chr9 73740854 73741013 -44121614 + MER20 DNA MER1_type 85 219 0 1998 156 0 0 chr9 73741987 73742289 -44120338 + AluSx SINE Alu 1 302 -10 751 158 2 0 chr9 73743322 73743471 -44119156 - MLT1B LTR MaLR -1 389 283 2452 75 0 0 chr9 73743471 73743766 -44118861 + AluSx SINE Alu 1 295 -17 751 158 2 0 chr9 73743766 73743896 -44118731 - MLT1B LTR MaLR -107 283 157 1875 250 161 33 chr9 73744038 73745400 -44117227 - L1ME3 LINE L1 0 6162 4615 2784 241 54 25 chr9 73745414 73746383 -44116244 - L1ME3 LINE L1 -1686 4460 3464 4321 168 32 37 chr9 73746424 73746733 -44115894 - L1MB7 LINE L1 -9 6175 5866 1971 124 0 42 chr9 73746733 73747039 -44115588 - AluSq SINE Alu -20 293 1 4321 168 32 37 chr9 73747039 73747638 -44114989 - L1MB7 LINE L1 -318 5866 5272 1488 117 5 5 chr9 73747738 73747943 -44114684 - AluJo SINE Alu -102 210 6 555 298 56 27 chr9 73748734 73749209 -44113418 + L1ME3A LINE L1 5088 5571 -591 2411 103 0 0 chr9 73749222 73749533 -44113094 - AluY SINE Alu 0 311 1 1420 110 35 0 chr9 73749550 73749750 -44112877 - L1PB1 LINE L1 0 6151 5945 275 258 278 0 chr9 73749855 73750064 -44112563 + L1ME3A LINE L1 5683 5949 -221 368 326 82 23 chr9 73752904 73753255 -44109372 + MLT1J2 LTR MaLR 6 382 -64 2330 223 43 13 chr9 73753255 73753789 -44108838 + MER44D DNA MER2_type 1 605 0 368 326 82 23 chr9 73753789 73753827 -44108800 + MLT1J2 LTR MaLR 382 416 -30 761 298 61 53 chr9 73754174 73754516 -44108111 + HERVL40 LTR ERVL 1258 1602 -3928 2551 284 70 23 chr9 73754516 73755471 -44107156 + HERVL40 LTR ERVL 2522 3521 -2009 340 258 32 11 chr9 73756519 73756612 -44106015 + L2 LINE L2 3210 3304 -9 21 0 0 0 chr9 73757668 73757689 -44104938 + AT_rich Low_complexity Low_complexity 1 21 0 2089 222 74 44 chr9 73758260 73758542 -44104085 + L1MB5 LINE L1 2522 2794 -3352 1848 159 14 3 chr9 73758542 73758832 -44103795 + AluJb SINE Alu 1 293 -19 2089 222 74 44 chr9 73758832 73759319 -44103308 + L1MB5 LINE L1 2794 3314 -2832 2964 180 60 27 chr9 73759342 73759693 -44102934 + L1MB5 LINE L1 4695 5033 -1141 1808 172 0 7 chr9 73759693 73759983 -44102644 - AluJb SINE Alu -24 288 1 2964 180 60 27 chr9 73759983 73760397 -44102230 + L1MB5 LINE L1 5033 5432 -742 2048 123 7 0 chr9 73760397 73760705 -44101922 + AluSc SINE Alu 1 310 0 2964 180 60 27 chr9 73760705 73761121 -44101506 + L1MB5 LINE L1 5432 5899 -275 * 3446 248 61 36 chr9 73761106 73761728 -44100899 + L1MD2 LINE L1 2343 2948 -3198 2418 73 0 0 chr9 73761728 73762028 -44100599 + AluY SINE Alu 5 304 -7 3446 248 61 36 chr9 73762028 73762775 -44099852 + L1MD2 LINE L1 2948 3746 -2400 269 194 48 87 chr9 73762756 73762859 -44099768 + L1MD2 LINE L1 5272 5370 -872 * 1682 226 42 24 chr9 73762922 73763347 -44099280 + MER74B LTR ERVL 123 555 -67 2341 193 102 40 chr9 73763406 73764032 -44098595 + L1MD2 LINE L1 5368 6032 -327 1172 159 11 0 chr9 73764339 73764521 -44098106 - Tigger2 DNA MER2_type -2182 536 353 2151 111 3 10 chr9 73764521 73764827 -44097800 - AluSc SINE Alu -5 304 1 1336 178 45 61 chr9 73764830 73765189 -44097438 - MER65B LTR ERV1 -178 353 1 289 249 240 27 chr9 73765458 73765679 -44096948 - L2 LINE L2 -2 3311 3044 1841 92 61 58 chr9 73765679 73765972 -44096655 - AluSg SINE Alu -16 294 1 2483 54 0 3 chr9 73766112 73766406 -44096221 - AluY SINE Alu -17 294 2 216 0 0 0 chr9 73766414 73766438 -44096189 + (T)n Simple_repeat Simple_repeat 1 24 0 250 243 28 75 chr9 73766639 73766746 -44095881 - MER5A DNA MER1_type -84 105 4 2518 49 13 0 chr9 73766940 73767246 -44095381 - AluY SINE Alu -1 310 1 218 235 137 108 chr9 73767378 73767480 -44095147 + L2 LINE L2 3153 3257 -15 1706 141 28 0 chr9 73767836 73768127 -44094500 - AluSq SINE Alu -8 305 7 206 213 0 0 chr9 73768431 73768478 -44094149 + (CCCCG)n Simple_repeat Simple_repeat 2 48 0 2438 22 0 0 chr9 73768947 73769215 -44093412 - L1PA4 LINE L1 -3 6152 5885 2062 62 0 4 chr9 73769241 73769497 -44093130 + AluSg SINE Alu 39 293 -17 298 253 36 12 chr9 73769724 73769807 -44092820 - LTR16C LTR ERVL -219 272 188 1844 181 16 102 chr9 73769994 73770447 -44092180 - MLT2D LTR ERVL 0 414 1 1665 140 114 7 chr9 73770525 73770796 -44091831 + AluJb SINE Alu 1 300 -12 23 0 0 0 chr9 73770982 73771005 -44091622 + AT_rich Low_complexity Low_complexity 1 23 0 202 276 61 61 chr9 73771204 73771302 -44091325 - L2 LINE L2 -33 3280 3183 * 314 227 148 47 chr9 73771297 73771425 -44091202 + MER5A DNA MER1_type 31 171 -18 * 408 228 171 8 chr9 73771329 73771452 -44091175 - MER5A DNA MER1_type -46 143 1 224 239 0 0 chr9 73771706 73771752 -44090875 - L2 LINE L2 0 3272 3227 317 323 26 58 chr9 73771788 73771977 -44090650 + L2 LINE L2 1542 1724 -1590 400 243 18 18 chr9 73772024 73772135 -44090492 - MLT1K LTR MaLR -7 581 471 532 247 207 33 chr9 73772513 73772784 -44089843 + MLT1H LTR MaLR 232 549 0 2553 71 0 3 chr9 73773849 73774158 -44088469 + AluY SINE Alu 1 308 -3 2252 123 0 0 chr9 73774187 73774496 -44088131 + AluSx SINE Alu 1 309 -3 4050 99 0 4 chr9 73774509 73775022 -44087605 - MER9 LTR ERVK 0 511 1 2100 134 3 0 chr9 73775157 73775462 -44087165 + AluSx SINE Alu 1 306 -6 782 95 107 25 chr9 73775738 73775876 -44086751 + MER39B LTR ERV1 8 196 -511 816 163 8 0 chr9 73775879 73776002 -44086625 - AluJb SINE Alu -187 125 2 279 280 81 43 chr9 73776007 73776193 -44086434 - L1M4b LINE L1 -5335 1524 1332 1408 210 134 31 chr9 73776193 73776612 -44086015 - MLT1C LTR MaLR 0 467 6 1137 195 110 13 chr9 73776789 73777107 -44085520 - Cheshire DNA MER1_type -6 2414 2066 1428 146 46 42 chr9 73777108 73777368 -44085259 + AluJb SINE Alu 35 295 -17 4752 210 103 18 chr9 73777368 73777677 -44084950 - Cheshire DNA MER1_type -349 2071 1790 608 202 0 16 chr9 73777677 73777801 -44084826 - FLAM_A SINE Alu -10 123 2 4752 210 103 18 chr9 73777801 73778717 -44083910 - Cheshire DNA MER1_type -630 1790 742 1998 103 62 98 chr9 73779245 73779453 -44083174 - THE1C LTR MaLR 0 375 186 2216 118 0 0 chr9 73779453 73779750 -44082877 + AluSx SINE Alu 1 297 -15 1998 103 62 98 chr9 73779750 73779928 -44082699 - THE1C LTR MaLR -189 186 3 721 300 66 16 chr9 73781111 73781474 -44081153 + L1MC4 LINE L1 6914 7294 -748 579 155 0 19 chr9 73781474 73781577 -44081050 - AluJo/FRAM SINE Alu -12 300 200 1184 77 19 0 chr9 73781577 73781733 -44080894 + AluSg/x SINE Alu 154 312 0 299 257 0 0 chr9 73781753 73781823 -44080804 + L1MC4 LINE L1 7448 7517 -525 2401 140 77 0 chr9 73781911 73782312 -44080315 + MSTB1 LTR MaLR 1 432 0 2183 120 0 3 chr9 73782862 73783153 -44079474 - AluSx SINE Alu -22 290 1 1625 176 24 17 chr9 73783499 73783789 -44078838 + AluJb SINE Alu 1 292 -20 367 142 14 3 chr9 73784956 73785020 -44077607 + Alu SINE Alu 2 51 -249 257 35 0 0 chr9 73785039 73785068 -44077559 + LTR48B LTR ERV1 1 29 -615 * 3243 167 36 18 chr9 73785066 73785683 -44076944 + MER39 LTR ERV1 76 703 -4 261 259 43 9 chr9 73785683 73785799 -44076828 + L1MB3 LINE L1 3333 3452 -2694 * 884 188 16 5 chr9 73785798 73785990 -44076637 + L1MB3 LINE L1 4974 5167 -979 939 181 0 0 chr9 73785990 73786145 -44076482 + FAM SINE Alu 1 155 -30 841 107 0 67 chr9 73786149 73786327 -44076300 + (GGGGA)n Simple_repeat Simple_repeat 5 170 0 4261 169 64 14 chr9 73786341 73786751 -44075876 + L1MB3 LINE L1 5180 5568 -615 2193 115 0 3 chr9 73786751 73787047 -44075580 + AluSx SINE Alu 3 297 -15 4261 169 64 14 chr9 73787047 73787564 -44075063 + L1MB3 LINE L1 5568 6152 -31 825 148 25 0 chr9 73787564 73787686 -44074941 + FLAM_C SINE Alu 1 125 -18 2232 93 24 3 chr9 73787695 73787986 -44074641 + AluSx SINE Alu 1 297 -15 3249 214 41 41 chr9 73787986 73788652 -44073975 + L1MB7 LINE L1 4631 5295 -889 2627 52 0 0 chr9 73788652 73788962 -44073665 + AluY SINE Alu 1 310 -1 3249 214 41 41 chr9 73788962 73789469 -44073158 + L1MB7 LINE L1 5295 5975 -209 1712 185 81 27 chr9 73789469 73789875 -44072752 + MSTC LTR MaLR 1 428 0 3249 214 41 41 chr9 73789875 73790079 -44072548 + L1MB7 LINE L1 5975 6177 -7 2097 119 13 3 chr9 73791164 73791467 -44071160 + AluSq SINE Alu 1 306 -7 22 0 0 0 chr9 73791479 73791501 -44071126 + AT_rich Low_complexity Low_complexity 1 22 0 315 216 0 0 chr9 73791501 73791552 -44071075 - Tigger2 DNA MER2_type -1 2717 2667 2286 101 3 3 chr9 73791658 73791956 -44070671 - AluSc SINE Alu -10 299 2 404 83 33 0 chr9 73791997 73792057 -44070570 - Alu SINE Alu -6 296 235 1147 61 0 0 chr9 73792057 73792189 -44070438 - AluY SINE Alu -179 132 1 9662 53 13 104 chr9 73792304 73793798 -44068829 + SVA Other Other 11 1369 -17 315 0 0 0 chr9 73793801 73793836 -44068791 + (TAAAA)n Simple_repeat Simple_repeat 1 35 0 1149 181 95 18 chr9 73793864 73794257 -44068370 + MER31B LTR ERV1 1 466 0 2265 117 3 0 chr9 73794309 73794617 -44068010 - AluSg SINE Alu -1 309 1 789 163 94 25 chr9 73794787 73794947 -44067680 + MER65C LTR ERV1 1 171 -290 1917 176 152 39 chr9 73794947 73795400 -44067227 + LTR64 LTR ERVK 1 516 -42 1877 130 11 21 chr9 73795400 73795685 -44066942 - AluSg SINE Alu -3 307 26 1917 176 152 39 chr9 73795685 73795725 -44066902 + LTR64 LTR ERVK 516 550 -8 2071 158 71 47 chr9 73795726 73796176 -44066451 + LOR1b LTR ERV1 1 461 0 1657 165 15 4 chr9 73796208 73796521 -44066106 - AluJb SINE Alu 0 327 12 1425 173 58 14 chr9 73796558 73796836 -44065791 + MER65C LTR ERV1 172 461 0 2208 82 48 0 chr9 73797102 73797394 -44065233 + AluY SINE Alu 1 306 -5 434 124 48 59 chr9 73797425 73797527 -44065100 + L1MA9 LINE L1 6043 6290 -22 26 74 0 0 chr9 73797527 73797581 -44065046 + AT_rich Low_complexity Low_complexity 1 54 0 3173 166 49 57 chr9 73797881 73798581 -44064046 - LTR8A LTR ERV1 0 727 34 2363 182 37 9 chr9 73799263 73799696 -44062931 - LTR39 LTR ERV1 0 783 339 332 321 18 0 chr9 73800024 73800133 -44062494 + MIR SINE MIR 30 140 -68 6318 33 0 18 chr9 73801028 73801763 -44060864 + SVA Other Other 665 1386 0 4833 137 44 4 chr9 73801780 73802619 -44060008 + L1MA4 LINE L1 5428 6300 0 32 0 0 0 chr9 73802630 73802662 -44059965 + AT_rich Low_complexity Low_complexity 1 32 0 929 250 41 55 chr9 73803088 73803141 -44059486 - L1MCa LINE L1 -3321 3105 3053 2363 92 0 16 chr9 73803141 73803456 -44059171 - AluSq SINE Alu -3 310 1 929 250 41 55 chr9 73803456 73803766 -44058861 - L1MCa LINE L1 -3373 3053 2747 645 186 8 8 chr9 73803773 73803902 -44058725 - FRAM SINE Alu -17 159 31 3669 230 76 55 chr9 73803914 73805016 -44057611 - L1MCa LINE L1 -3664 2762 1684 2194 112 23 0 chr9 73805016 73805321 -44057306 - AluSx SINE Alu 0 312 1 3669 230 76 55 chr9 73805321 73805739 -44056888 - L1MCa LINE L1 -4742 1684 1276 1676 175 31 0 chr9 73805739 73806030 -44056597 - AluJb SINE Alu -12 300 1 3669 230 76 55 chr9 73806030 73806206 -44056421 - L1MCa LINE L1 -5150 1276 867 506 127 13 0 chr9 73806203 73806282 -44056345 + L1MCa LINE L1 99 178 -6248 * 3636 203 30 25 chr9 73806319 73807116 -44055511 - L1MCa LINE L1 -5581 845 45 7258 134 56 131 chr9 73807116 73808948 -44053679 + pTR5 LTR ERV1 743 2438 0 5291 245 70 25 chr9 73808964 73809122 -44053505 - L1M4 LINE L1 -937 5209 5060 2007 94 53 0 chr9 73809122 73809388 -44053239 + AluSx SINE Alu 1 280 -32 180 0 0 0 chr9 73809388 73809408 -44053219 + (CAAT)n Simple_repeat Simple_repeat 4 23 0 5291 245 70 25 chr9 73809408 73809438 -44053189 - L1M4 LINE L1 -1086 5060 5033 1256 112 122 0 chr9 73809438 73809643 -44052984 + MER30 DNA MER1_type 1 230 0 5291 245 70 25 chr9 73809643 73810448 -44052179 - L1M4 LINE L1 -1113 5033 4266 2153 115 7 0 chr9 73810448 73810752 -44051875 - AluSx SINE Alu -6 306 1 5291 245 70 25 chr9 73810752 73811908 -44050719 - L1M4 LINE L1 -1880 4266 2870 1776 88 4 0 chr9 73811908 73812136 -44050491 + AluSg/x SINE Alu 76 304 -8 5291 245 70 25 chr9 73812136 73812149 -44050478 - L1M4 LINE L1 -3276 2870 2859 1630 157 10 17 chr9 73812779 73813079 -44049548 - L1MA5 LINE L1 0 6300 6003 7511 36 10 0 chr9 73813222 73814666 -44047961 - L1PA5 LINE L1 -8 6146 4696 1087 117 0 7 chr9 73814666 73814811 -44047816 - AluSg SINE Alu -166 144 1 1451 202 84 33 chr9 73814811 73814994 -44047633 - L1M4 LINE L1 -1508 4638 4466 1792 147 13 51 chr9 73814994 73815162 -44047465 - AluJo SINE Alu -10 302 150 2087 142 3 6 chr9 73815162 73815473 -44047154 - AluSx SINE Alu 0 312 3 1792 147 13 51 chr9 73815473 73815618 -44047009 - AluJo SINE Alu -162 150 1 1451 202 84 33 chr9 73815618 73815860 -44046767 - L1M4 LINE L1 -1680 4466 4191 595 254 139 10 chr9 73816113 73816314 -44046313 + MIR SINE MIR 36 262 0 2267 121 0 3 chr9 73816583 73816896 -44045731 - AluSq SINE Alu -1 312 1 1719 87 0 138 chr9 73817329 73817640 -44044987 + LTR12 LTR ERV1 7 274 -440 248 254 60 0 chr9 73817655 73817722 -44044905 + LTR30 LTR ERV1 539 609 -113 463 69 86 190 chr9 73817730 73817756 -44044871 + LTR12 LTR ERV1 479 506 -208 2467 70 0 3 chr9 73817756 73818054 -44044573 + AluY SINE Alu 1 297 -14 463 69 86 190 chr9 73818054 73818143 -44044484 + LTR12 LTR ERV1 506 582 -132 376 218 118 0 chr9 73818411 73818521 -44044106 - L1MD3 LINE L1 -1 7994 7872 2733 159 34 28 chr9 73819160 73819649 -44042978 - L1MD1 LINE L1 0 6242 5748 2205 115 3 3 chr9 73819649 73819945 -44042682 + AluSc SINE Alu 1 296 -13 2733 159 34 28 chr9 73819945 73819984 -44042643 - L1MD1 LINE L1 -494 5748 5711 2362 93 0 3 chr9 73819984 73820285 -44042342 + AluSc SINE Alu 1 300 -9 277 105 0 0 chr9 73820286 73820324 -44042303 - L1MC/D LINE L1 -494 5748 5711 2248 102 0 3 chr9 73820324 73820619 -44042008 + AluSc SINE Alu 1 294 -15 1628 173 16 29 chr9 73820628 73820941 -44041686 + AluJb SINE Alu 2 310 -2 1981 176 71 58 chr9 73821031 73821093 -44041534 + MLT1D LTR MaLR 32 92 -413 3693 101 4 8 chr9 73821093 73821606 -44041021 - MER9 LTR ERVK 0 511 1 1981 176 71 58 chr9 73821606 73821687 -44040940 + MLT1D LTR MaLR 92 170 -335 2498 65 3 0 chr9 73821687 73821980 -44040647 - AluY SINE Alu -17 294 1 1981 176 71 58 chr9 73821980 73822302 -44040325 + MLT1D LTR MaLR 170 504 -1 2276 119 0 0 chr9 73822599 73822894 -44039733 + AluSx SINE Alu 1 295 -17 2287 82 7 0 chr9 73824160 73824471 -44038156 + AluSq SINE Alu 1 313 0 2486 51 7 3 chr9 73824759 73825054 -44037573 - AluY SINE Alu -15 296 1 1795 187 3 7 chr9 73825867 73826172 -44036455 + AluJo SINE Alu 4 307 -5 1296 175 15 140 chr9 73826172 73826578 -44036049 + L1PA16 LINE L1 5806 6160 -6 2195 117 10 10 chr9 73826580 73826889 -44035738 + AluSx SINE Alu 3 311 -1 2126 71 3 45 chr9 73827359 73827670 -44034957 + AluY SINE Alu 1 298 -13 2469 87 3 0 chr9 73828068 73828380 -44034247 - AluSp SINE Alu 0 313 1 210 229 0 0 chr9 73828415 73828463 -44034164 + CT-rich Low_complexity Low_complexity 1 48 0 325 258 111 87 chr9 73828540 73828838 -44033789 - L1MC4a LINE L1 -89 6032 5728 696 115 9 9 chr9 73828838 73828951 -44033676 + MLT2C2 LTR ERVL 1 113 -351 253 254 0 0 chr9 73828963 73829022 -44033605 + ERVL-C2 LTR ERVL 475 533 -5231 8988 180 45 47 chr9 73829033 73829743 -44032884 + ERVL-C2 LTR ERVL 3917 4627 -1137 2397 78 0 10 chr9 73829743 73829879 -44032748 + AluSp SINE Alu 1 137 -176 2380 65 24 3 chr9 73829879 73830171 -44032456 + AluY SINE Alu 1 298 -13 2397 78 0 10 chr9 73830171 73830330 -44032297 + AluSp SINE Alu 137 293 -20 8988 180 45 47 chr9 73830330 73831329 -44031298 + ERVL-C2 LTR ERVL 4627 5625 -139 2175 121 3 0 chr9 73831329 73831627 -44031000 - AluSx SINE Alu -13 299 1 8988 180 45 47 chr9 73831627 73831759 -44030868 + ERVL-C2 LTR ERVL 5625 5756 -8 1925 170 89 10 chr9 73831759 73832140 -44030487 + MLT2C2 LTR ERVL 3 417 -47 2285 110 3 0 chr9 73832140 73832440 -44030187 + AluSp SINE Alu 1 301 -12 1925 170 89 10 chr9 73832440 73832452 -44030175 + MLT2C2 LTR ERVL 417 427 -37 229 247 22 0 chr9 73832474 73832563 -44030064 - L1MC4 LINE L1 -1337 6705 6615 2798 165 12 0 chr9 73832658 73833142 -44029485 + L1MB3 LINE L1 5685 6174 -9 353 157 0 29 chr9 73833482 73833552 -44029075 - LTR41 LTR ERVL 0 773 706 985 150 0 25 chr9 73833573 73833733 -44028894 + FAM SINE Alu 10 165 -20 637 227 37 18 chr9 73834267 73834430 -44028197 - LTR41 LTR ERVL -607 166 1 1835 131 7 27 chr9 73834865 73835162 -44027465 + AluJo SINE Alu 1 291 -21 606 142 0 82 chr9 73835706 73835840 -44026787 - FLAM_C SINE Alu 0 143 21 264 212 15 0 chr9 73836073 73836172 -44026455 + (CCCCG)n Simple_repeat Simple_repeat 1 100 0 27 49 0 0 chr9 73836579 73836620 -44026007 + GC_rich Low_complexity Low_complexity 1 41 0 2505 57 0 0 chr9 73837353 73837652 -44024975 + AluY SINE Alu 1 299 -12 4408 155 53 17 chr9 73837761 73838240 -44024387 - L1MA7 LINE L1 0 6291 5831 2628 39 3 3 chr9 73838240 73838546 -44024081 - AluY SINE Alu -5 306 1 4408 155 53 17 chr9 73838546 73838949 -44023678 - L1MA7 LINE L1 -460 5831 5444 2193 123 13 0 chr9 73838949 73839249 -44023378 - AluSx SINE Alu -8 304 1 4408 155 53 17 chr9 73839249 73839571 -44023056 - L1MA7 LINE L1 -847 5444 5004 2001 120 42 3 chr9 73840199 73840483 -44022144 - AluSg SINE Alu -15 295 1 570 305 73 56 chr9 73841179 73841731 -44020896 - L2 LINE L2 -9 3263 2705 1744 154 11 7 chr9 73842056 73842341 -44020286 + AluJb SINE Alu 1 286 -26 1847 148 0 23 chr9 73842431 73842736 -44019891 + AluJo SINE Alu 1 298 -14 806 253 155 52 chr9 73843085 73843169 -44019458 - MLT1J2 LTR MaLR -22 428 354 2209 116 3 0 chr9 73843169 73843461 -44019166 + AluSp SINE Alu 1 293 -20 806 253 155 52 chr9 73843461 73843764 -44018863 - MLT1J2 LTR MaLR -96 354 1 736 213 87 43 chr9 73843925 73844132 -44018495 + MER20 DNA MER1_type 1 216 -3 1611 66 0 0 chr9 73844432 73844630 -44017997 - AluY SINE Alu 0 311 114 319 75 0 0 chr9 73844732 73844772 -44017855 + Alu SINE Alu 226 265 -36 2267 114 0 0 chr9 73844865 73845163 -44017464 + AluSc SINE Alu 1 298 -11 2089 116 24 3 chr9 73845499 73845792 -44016835 - AluSq SINE Alu -14 299 1 1763 76 0 44 chr9 73845899 73846150 -44016477 - AluY SINE Alu 0 311 72 1940 156 0 3 chr9 73846468 73846775 -44015852 + AluY SINE Alu 1 306 -5 1830 163 48 12 chr9 73846818 73847150 -44015477 + MER2 DNA MER2_type 1 344 0 2447 80 3 0 chr9 73847171 73847473 -44015154 + AluSc SINE Alu 1 303 -6 26 0 0 0 chr9 73847836 73847862 -44014765 + AT_rich Low_complexity Low_complexity 1 26 0 537 261 96 19 chr9 73848542 73848864 -44013763 + L1ME4a LINE L1 5772 6118 -3 2470 69 0 16 chr9 73849162 73849468 -44013159 - AluY SINE Alu -10 301 1 2205 100 40 0 chr9 73849468 73849767 -44012860 - AluSx SINE Alu 0 312 1 2417 84 3 3 chr9 73849904 73850203 -44012424 - AluSp SINE Alu -14 299 1 378 125 62 31 chr9 73850528 73850592 -44012035 + Tigger2 DNA MER2_type 1 66 -2652 2018 62 0 33 chr9 73850611 73850885 -44011742 + AluY SINE Alu 1 265 -46 439 119 376 9 chr9 73850885 73850956 -44011671 + Tigger2 DNA MER2_type 2284 2328 -390 183 42 0 0 chr9 73850956 73850980 -44011647 + (TCC)n Simple_repeat Simple_repeat 3 26 0 439 119 376 9 chr9 73850980 73851017 -44011610 + Tigger2 DNA MER2_type 2328 2432 -286 3017 144 108 11 chr9 73851023 73851654 -44010973 + L1MCa LINE L1 778 1469 -4957 1111 89 0 0 chr9 73851658 73851793 -44010834 + AluSq/x SINE Alu 1 135 -177 1862 159 10 16 chr9 73851793 73852101 -44010526 + AluSx SINE Alu 1 306 -6 1172 95 12 133 chr9 73852103 73852491 -44010136 + L1MCa LINE L1 1477 1924 -4502 2279 115 0 0 chr9 73852492 73852796 -44009831 - AluSq SINE Alu -7 306 3 2258 113 0 0 chr9 73853125 73853418 -44009209 - AluSg SINE Alu -17 293 1 1687 170 0 24 chr9 73853681 73853970 -44008657 + AluJo SINE Alu 1 282 -30 1039 122 111 0 chr9 73853979 73854151 -44008476 - AluSg/x SINE Alu 0 312 122 657 86 0 0 chr9 73854251 73854332 -44008295 + ERVL LTR ERVL 4582 4662 -1102 2276 91 0 29 chr9 73854332 73854468 -44008159 + AluSx SINE Alu 1 139 -173 2380 65 24 3 chr9 73854468 73854760 -44007867 + AluY SINE Alu 1 298 -13 2276 91 0 29 chr9 73854760 73854932 -44007695 + AluSx SINE Alu 139 300 -12 1164 90 78 0 chr9 73855117 73855283 -44007344 - AluSc SINE Alu -2 307 129 512 84 0 0 chr9 73855328 73855399 -44007228 + Alu SINE Alu 232 302 -10 23 0 0 0 chr9 73855552 73855575 -44007052 + AT_rich Low_complexity Low_complexity 1 23 0 2123 150 24 3 chr9 73855575 73855916 -44006711 + MER7A DNA MER2_type 1 346 0 259 186 0 0 chr9 73856423 73856482 -44006145 - Alu SINE Alu 0 301 243 2005 128 0 3 chr9 73856599 73856888 -44005739 + AluSg SINE Alu 10 297 -13 905 173 27 0 chr9 73856963 73857113 -44005514 + FRAM SINE Alu 1 154 -12 193 105 0 53 chr9 73857116 73857173 -44005454 + (TTAA)n Simple_repeat Simple_repeat 1 54 0 4654 67 17 0 chr9 73857787 73858368 -44004259 + LTR10C LTR ERV1 1 591 0 2012 115 4 0 chr9 73859011 73859324 -44003303 - AluSx SINE Alu 0 326 13 2598 65 0 0 chr9 73859348 73859657 -44002970 - AluY SINE Alu -1 310 2 2260 111 0 7 chr9 73860290 73860597 -44002030 - AluSx SINE Alu -7 305 1 1586 51 98 0 chr9 73860855 73861069 -44001558 - L1PA8 LINE L1 0 6172 5938 2560 182 133 6 chr9 73861103 73861728 -44000899 + L1ME2 LINE L1 5324 6027 -137 261 205 77 0 chr9 73861736 73861814 -44000813 + L1ME2 LINE L1 6081 6164 0 1280 177 9 5 chr9 73862086 73862301 -44000326 - AluJo SINE Alu -20 292 77 275 75 0 0 chr9 73862420 73862460 -44000167 + Alu SINE Alu 265 304 -4 913 219 141 35 chr9 73862889 73863236 -43999391 + L1ME3A LINE L1 5557 5940 -230 890 179 50 10 chr9 73863294 73863495 -43999132 + L1MD3 LINE L1 6909 7117 -878 358 172 32 75 chr9 73863496 73863589 -43999038 + MLT1F1 LTR MaLR 37 125 -442 2092 164 73 28 chr9 73863589 73864012 -43998615 + L1MD3 LINE L1 7404 7851 -144 2397 84 3 0 chr9 73864012 73864311 -43998316 - AluSx SINE Alu -12 300 1 2092 164 73 28 chr9 73864311 73864350 -43998277 + L1MD3 LINE L1 7851 7887 -108 368 117 83 0 chr9 73864351 73864411 -43998216 + MLT1A2 LTR MaLR 1 65 -309 2668 46 3 0 chr9 73864709 73865016 -43997611 + AluY SINE Alu 2 309 -2 325 263 10 10 chr9 73865227 73865326 -43997301 + MIR3 SINE MIR 100 198 -10 739 75 0 0 chr9 73865724 73865818 -43996809 - AluSg/x SINE Alu -12 298 205 2168 129 0 10 chr9 73867564 73867873 -43994754 - AluSg SINE Alu -4 306 1 282 194 104 0 chr9 73867890 73867957 -43994670 - L1MB8 LINE L1 0 6178 6105 22 70 0 0 chr9 73867998 73868041 -43994586 + AT_rich Low_complexity Low_complexity 1 43 0 1676 226 44 7 chr9 73868045 73868456 -43994171 - L1MB7 LINE L1 -86 6098 5673 1898 258 111 32 chr9 73868485 73868788 -43993839 - L1MEc LINE L1 -5438 958 680 2216 101 3 3 chr9 73868788 73869084 -43993543 - AluSc SINE Alu -13 296 1 1898 258 111 32 chr9 73869084 73869216 -43993411 - L1MEc LINE L1 -5716 680 560 1997 146 7 3 chr9 73869216 73869517 -43993110 - AluSx SINE Alu -6 306 5 1898 258 111 32 chr9 73869517 73869852 -43992775 - L1MEc LINE L1 -5836 560 126 317 211 104 119 chr9 73869977 73870228 -43992399 + L1MC/D LINE L1 5324 5570 -2238 2258 116 0 3 chr9 73870282 73870585 -43992042 + AluSq SINE Alu 4 305 -8 1675 112 151 0 chr9 73871274 73871533 -43991094 - AluSx SINE Alu -14 298 1 24 32 0 0 chr9 73871740 73871771 -43990856 + AT_rich Low_complexity Low_complexity 1 31 0 274 182 22 86 chr9 73872437 73872537 -43990090 - MIR SINE MIR -82 126 31 2421 75 0 0 chr9 73872825 73873117 -43989510 - AluSc SINE Alu -15 294 3 4097 157 80 60 chr9 73873277 73874187 -43988440 + MER21A LTR ERV1 1 928 -3 226 139 83 28 chr9 73874201 73874273 -43988354 + L1M4 LINE L1 5316 5391 -755 776 291 77 40 chr9 73874285 73874672 -43987955 + L1M4 LINE L1 3829 4243 -1903 2035 123 7 7 chr9 73874672 73874972 -43987655 + AluSx SINE Alu 1 300 -12 776 291 77 40 chr9 73874972 73875114 -43987513 + L1M4 LINE L1 4243 4378 -1768 387 255 102 19 chr9 73875137 73875294 -43987333 + L1M4 LINE L1 4499 4668 -1478 572 208 0 16 chr9 73875488 73875613 -43987014 + FLAM_C SINE Alu 1 123 -20 459 0 0 0 chr9 73875613 73875664 -43986963 + (CA)n Simple_repeat Simple_repeat 2 52 0 745 176 8 0 chr9 73875665 73875790 -43986837 - FLAM_C SINE Alu -17 126 1 2265 114 3 0 chr9 73875830 73876138 -43986489 - AluSx SINE Alu -1 311 3 986 109 7 7 chr9 73876320 73876458 -43986169 - AluSp/q SINE Alu -20 293 156 1216 263 61 17 chr9 73876528 73876935 -43985692 - LTR16C LTR ERVL 0 491 67 2095 117 0 3 chr9 73877222 73877505 -43985122 + AluSx SINE Alu 1 282 -30 2012 76 88 0 chr9 73877534 73877849 -43984778 + AluSp SINE Alu 1 338 0 2273 125 0 0 chr9 73878702 73879014 -43983613 + AluSx SINE Alu 1 312 0 416 240 40 8 chr9 73879049 73879174 -43983453 + MER3 DNA MER1_type 1 129 -80 260 328 57 16 chr9 73879440 73879562 -43983065 - MIR SINE MIR -47 215 89 1572 180 53 0 chr9 73880302 73880585 -43982042 - AluJo SINE Alu -14 298 1 2147 124 3 13 chr9 73880865 73881164 -43981463 + AluSx SINE Alu 1 296 -16 2348 84 0 10 chr9 73881488 73881787 -43980840 + AluY SINE Alu 1 296 -15 3839 176 43 17 chr9 73881788 73882547 -43980080 - L1MB2 LINE L1 -1 6170 5392 662 137 32 32 chr9 73882547 73882671 -43979956 - FLAM_A SINE Alu -11 131 8 3509 214 59 24 chr9 73882677 73883557 -43979070 - L1MB2 LINE L1 -746 5400 4490 2550 51 0 0 chr9 73883560 73883856 -43978771 - AluY SINE Alu -15 296 1 1460 172 57 8 chr9 73884451 73884562 -43978065 + AluJb SINE Alu 1 105 -207 1884 129 4 0 chr9 73884562 73884818 -43977809 + AluSx SINE Alu 28 284 -28 210 37 0 0 chr9 73884823 73884850 -43977777 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1460 172 57 8 chr9 73884850 73884994 -43977633 + AluJb SINE Alu 108 275 -37 2115 117 3 7 chr9 73885374 73885673 -43976954 + AluY SINE Alu 1 298 -13 183 80 0 0 chr9 73885726 73885751 -43976876 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 417 152 127 13 chr9 73885754 73885833 -43976794 - FRAM SINE Alu -31 145 58 743 196 29 0 chr9 73885853 73885991 -43976636 - AluJo SINE Alu -86 226 85 309 167 0 0 chr9 73885991 73886039 -43976588 - AluSc SINE Alu -51 248 201 664 121 10 0 chr9 73886039 73886138 -43976489 - AluSq/x SINE Alu -172 140 41 1546 167 0 8 chr9 73886138 73886383 -43976244 - AluJo SINE Alu -32 280 38 21 0 0 0 chr9 73886412 73886433 -43976194 + AT_rich Low_complexity Low_complexity 1 21 0 190 198 0 48 chr9 73887410 73887577 -43975050 + GA-rich Low_complexity Low_complexity 1 159 0 456 155 58 10 chr9 73887691 73887794 -43974833 + L1ME2 LINE L1 6045 6152 -12 2375 91 0 3 chr9 73887795 73888091 -43974536 - AluSg SINE Alu -15 295 1 767 91 99 0 chr9 73888092 73888213 -43974414 - AluSq/x SINE Alu -177 135 3 2404 86 0 0 chr9 73888233 73888536 -43974091 - AluSx SINE Alu -9 303 1 281 57 0 0 chr9 73888536 73888571 -43974056 - Alu SINE Alu -272 36 2 633 216 74 61 chr9 73888613 73888844 -43973783 - L1MC5 LINE L1 -479 7482 7249 1911 143 3 0 chr9 73888859 73889146 -43973481 - AluSx SINE Alu -16 296 9 1820 157 0 27 chr9 73889335 73889628 -43972999 + AluJb SINE Alu 1 285 -27 186 43 0 0 chr9 73889628 73889651 -43972976 + (CAAAG)n Simple_repeat Simple_repeat 2 24 0 659 48 0 0 chr9 73889792 73889876 -43972751 + AluS SINE Alu 1 84 -229 444 231 37 0 chr9 73890036 73890144 -43972483 - AluSq/x SINE Alu -199 113 2 696 139 33 116 chr9 73890145 73890360 -43972267 + L1MCa LINE L1 1932 2128 -4298 1567 91 0 5 chr9 73890376 73890574 -43972053 + AluSq SINE Alu 98 294 -19 1844 269 49 15 chr9 73890574 73891184 -43971443 + L1MCa LINE L1 2555 3185 -3241 1974 143 10 0 chr9 73891195 73891488 -43971139 + AluSx SINE Alu 5 300 -12 1873 142 10 3 chr9 73891488 73891783 -43970844 + Tigger2 DNA MER2_type 2422 2718 0 236 262 135 24 chr9 73892028 73892154 -43970473 - MIR SINE MIR 0 262 123 2063 125 33 3 chr9 73892819 73893122 -43969505 - AluSx SINE Alu 0 312 1 761 177 25 51 chr9 73893439 73893597 -43969030 + AluJb SINE Alu 121 274 -38 297 75 0 0 chr9 73893601 73893641 -43968986 + (TG)n Simple_repeat Simple_repeat 2 41 0 2193 108 0 3 chr9 73893652 73893940 -43968687 - AluSx SINE Alu -24 288 2 238 132 38 0 chr9 73893940 73893993 -43968634 + (TA)n Simple_repeat Simple_repeat 1 55 0 597 213 24 10 chr9 73894143 73894278 -43968349 - MER77 LTR ERV1 -9 596 443 321 150 20 18 chr9 73894308 73894561 -43968066 + AluJo SINE Alu 1 302 0 895 40 0 0 chr9 73894622 73894768 -43967859 - AluY SINE Alu 0 328 183 21 71 0 0 chr9 73895568 73895610 -43967017 + AT_rich Low_complexity Low_complexity 1 42 0 351 44 0 0 chr9 73895746 73895791 -43966836 + (TG)n Simple_repeat Simple_repeat 2 46 0 389 254 89 52 chr9 73896173 73896201 -43966426 - MLT1I LTR MaLR -3 406 381 2188 111 85 18 chr9 73896201 73896542 -43966085 + THE1B LTR MaLR 1 364 0 389 254 89 52 chr9 73896542 73896726 -43965901 - MLT1I LTR MaLR -28 381 186 339 26 0 0 chr9 73896805 73896844 -43965783 - MLT1I LTR MaLR -370 39 1 2126 89 0 0 chr9 73896860 73897131 -43965496 - AluY SINE Alu -2 309 39 2112 90 27 13 chr9 73897131 73897431 -43965196 - AluSx SINE Alu -8 304 1 2194 107 0 7 chr9 73897441 73897732 -43964895 - AluSc SINE Alu -20 289 1 2321 106 0 0 chr9 73898146 73898439 -43964188 + AluSx SINE Alu 1 293 -19 26 64 0 0 chr9 73898662 73898709 -43963918 + AT_rich Low_complexity Low_complexity 1 47 0 806 165 0 0 chr9 73898709 73898836 -43963791 - FLAM_C SINE Alu -6 127 1 885 247 16 31 chr9 73898865 73898919 -43963708 - L1MD3 LINE L1 -12 7983 7930 2241 111 20 0 chr9 73898919 73899217 -43963410 + AluSc SINE Alu 1 304 -5 885 247 16 31 chr9 73899217 73899417 -43963210 - L1MD3 LINE L1 -65 7930 7733 497 218 56 62 chr9 73899493 73899546 -43963081 - MER104 DNA MER2_type -1719 179 127 2366 102 0 3 chr9 73899546 73899851 -43962776 - AluSq SINE Alu -9 304 1 497 218 56 62 chr9 73899851 73899976 -43962651 - MER104 DNA MER2_type -1771 127 2 525 272 64 19 chr9 73899976 73900241 -43962386 - L1MC4a LINE L1 -1941 5867 5591 319 281 11 0 chr9 73900349 73900438 -43962189 + L1MC4 LINE L1 6614 6703 -1339 1095 150 0 4 chr9 73900441 73900686 -43961941 + (TA)n Simple_repeat Simple_repeat 2 245 0 320 311 0 0 chr9 73900690 73900780 -43961847 + L1MC4 LINE L1 6614 6703 -1339 409 95 54 0 chr9 73900780 73900854 -43961773 + (TATG)n Simple_repeat Simple_repeat 4 81 0 247 120 40 0 chr9 73900854 73900904 -43961723 - L1MC4 LINE L1 -1339 6703 6652 2443 74 0 7 chr9 73900905 73901202 -43961425 - AluSx SINE Alu -17 295 1 9289 111 35 8 chr9 73901202 73902543 -43960084 - Tigger4(Zombi) DNA MER2_type -1354 1377 1 501 309 58 8 chr9 73902550 73902809 -43959818 - L1M4 LINE L1 -1988 4158 3887 2258 63 39 0 chr9 73902810 73903094 -43959533 - AluY SINE Alu -16 295 1 2396 60 3 77 chr9 73903101 73903437 -43959190 - AluY SINE Alu 0 311 1 689 97 0 0 chr9 73903438 73903531 -43959096 - AluS SINE Alu -219 94 2 2060 125 3 30 chr9 73903780 73904083 -43958544 - AluSx SINE Alu -17 295 1 328 322 23 46 chr9 73904271 73904445 -43958182 - MIR SINE MIR -44 218 49 583 238 49 7 chr9 73904776 73904919 -43957708 - L2 LINE L2 -4 3309 3161 708 176 66 0 chr9 73904982 73905118 -43957509 + FRAM SINE Alu 1 144 -32 2329 98 0 3 chr9 73905118 73905415 -43957212 - AluSg1 SINE Alu -13 296 1 186 43 0 0 chr9 73905428 73905451 -43957176 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 358 247 6 82 chr9 73905451 73905609 -43957018 - L2 LINE L2 -248 3065 2920 1749 163 14 11 chr9 73905639 73905922 -43956705 - AluJo SINE Alu -13 299 16 1062 153 18 0 chr9 73905931 73906101 -43956526 + AluSq SINE Alu 120 292 -21 23 33 0 0 chr9 73906215 73906245 -43956382 + AT_rich Low_complexity Low_complexity 1 30 0 906 284 100 41 chr9 73906647 73907109 -43955518 - MLT1F LTR MaLR -35 507 19 215 308 0 0 chr9 73907328 73907406 -43955221 - L2 LINE L2 -300 2972 2895 595 236 65 0 chr9 73907491 73907614 -43955013 + FLAM_A SINE Alu 1 131 -2 209 33 33 0 chr9 73907615 73907645 -43954982 + (GA)n Simple_repeat Simple_repeat 2 32 0 205 200 0 0 chr9 73907656 73907696 -43954931 + A-rich Low_complexity Low_complexity 1 40 0 1334 267 91 26 chr9 73907807 73908404 -43954223 - MER77 LTR ERV1 -8 597 53 571 253 138 60 chr9 73908521 73908836 -43953791 + MLT1I LTR MaLR 35 381 -28 2242 88 0 14 chr9 73908836 73909131 -43953496 - AluSc SINE Alu -18 291 1 571 253 138 60 chr9 73909131 73909163 -43953464 + MLT1I LTR MaLR 381 409 0 605 235 27 55 chr9 73909169 73909281 -43953346 + MIR SINE MIR 85 192 -70 2297 159 16 0 chr9 73909281 73909665 -43952962 - MLT1B LTR MaLR 0 390 1 605 235 27 55 chr9 73909665 73909735 -43952892 + MIR SINE MIR 192 262 0 1176 85 0 0 chr9 73909901 73910042 -43952585 + AluSq/x SINE Alu 1 141 -171 517 104 0 0 chr9 73910042 73910109 -43952518 - AluSp SINE Alu -133 180 114 2150 176 27 27 chr9 73910171 73910613 -43952014 + L1MC1 LINE L1 5886 6327 -6 2302 110 0 3 chr9 73911259 73911568 -43951059 - AluSx SINE Alu -4 308 1 282 336 18 9 chr9 73911599 73911712 -43950915 + MIR SINE MIR 31 144 -64 216 0 0 0 chr9 73911911 73911935 -43950692 + (TG)n Simple_repeat Simple_repeat 1 24 0 1746 115 56 0 chr9 73911943 73912195 -43950432 - AluSq SINE Alu -47 266 1 1771 151 3 63 chr9 73912471 73912637 -43949990 - AluJo SINE Alu -12 300 160 2337 82 17 0 chr9 73912637 73912930 -43949697 - AluSp SINE Alu -15 298 1 1771 151 3 63 chr9 73912930 73913082 -43949545 - AluJo SINE Alu -152 160 1 317 246 68 17 chr9 73913311 73913429 -43949198 + L1ME LINE L1 5658 5781 -340 840 197 24 39 chr9 73913429 73913637 -43948990 + LTR41 LTR ERVL 1 205 -568 456 198 42 0 chr9 73914035 73914131 -43948496 - MER5A DNA MER1_type -83 106 7 2376 68 41 0 chr9 73914319 73914611 -43948016 - AluY SINE Alu -7 304 1 1397 162 0 17 chr9 73914635 73914876 -43947751 - AluJo SINE Alu -1 311 75 2229 120 0 0 chr9 73914929 73915221 -43947406 - AluSq SINE Alu -19 294 3 2442 68 3 0 chr9 73915471 73915765 -43946862 + AluSp SINE Alu 1 295 -18 1713 183 3 20 chr9 73915962 73916268 -43946359 - AluJb SINE Alu -11 301 1 559 293 45 20 chr9 73916544 73916790 -43945837 + MLT1K LTR MaLR 14 265 -323 2247 111 0 0 chr9 73916811 73917099 -43945528 + AluSx SINE Alu 1 288 -24 470 239 0 0 chr9 73917120 73917212 -43945415 + AluS SINE Alu 2 93 -220 755 145 65 0 chr9 73918717 73918830 -43943797 + AluSq/x SINE Alu 2 125 -188 423 0 0 0 chr9 73918830 73918877 -43943750 + (CA)n Simple_repeat Simple_repeat 2 48 0 2477 149 67 7 chr9 73919384 73919848 -43942779 - L1MB5 LINE L1 -36 6138 5647 376 211 28 73 chr9 73919907 73920016 -43942611 - L2 LINE L2 -1 3271 3168 410 248 166 0 chr9 73920143 73920300 -43942327 - MLT1L LTR MaLR -11 604 422 612 279 136 28 chr9 73920326 73920649 -43941978 - MLT1L LTR MaLR -256 359 2 500 302 208 18 chr9 73920732 73921116 -43941511 + L2 LINE L2 2322 2778 -536 203 291 18 0 chr9 73921123 73921178 -43941449 + L2 LINE L2 2902 2957 -357 200 321 0 0 chr9 73921339 73921395 -43941232 + L2 LINE L2 3258 3313 0 210 245 32 11 chr9 73921658 73921752 -43940875 + (CGGGG)n Simple_repeat Simple_repeat 2 97 0 214 247 25 12 chr9 73921969 73922050 -43940577 + (CGG)n Simple_repeat Simple_repeat 3 84 0 22 35 0 0 chr9 73922674 73922703 -43939924 + GC_rich Low_complexity Low_complexity 1 29 0 2495 63 0 0 chr9 73923499 73923798 -43938829 + AluY SINE Alu 2 300 -11 2261 99 6 19 chr9 73924464 73924640 -43937987 - AluSq SINE Alu -3 310 138 1946 91 84 31 chr9 73924640 73924926 -43937701 - AluSc SINE Alu -8 301 1 2261 99 6 19 chr9 73924926 73925063 -43937564 - AluSq SINE Alu -175 138 1 2500 70 3 0 chr9 73926001 73926301 -43936326 - AluY SINE Alu -10 301 1 1575 143 42 35 chr9 73926394 73926680 -43935947 + AluJo SINE Alu 7 294 -18 2042 126 7 29 chr9 73926723 73927033 -43935594 + AluSx SINE Alu 2 304 -8 1955 137 0 7 chr9 73927035 73927327 -43935300 + AluSx SINE Alu 1 290 -22 2187 117 0 0 chr9 73927329 73927634 -43934993 + AluSx SINE Alu 4 308 0 2541 63 0 0 chr9 73928032 73928334 -43934293 + AluY SINE Alu 1 302 -9 378 0 0 0 chr9 73928334 73928376 -43934251 + (TA)n Simple_repeat Simple_repeat 2 43 0 1481 100 219 0 chr9 73928667 73928918 -43933709 + AluSp SINE Alu 1 306 -7 1864 162 0 14 chr9 73929139 73929429 -43933198 + AluSx SINE Alu 1 286 -26 24 53 0 0 chr9 73929433 73929471 -43933156 + AT_rich Low_complexity Low_complexity 1 38 0 2339 68 13 3 chr9 73930157 73930476 -43932151 - AluSp SINE Alu 0 322 1 2022 194 117 38 chr9 73931783 73932356 -43930271 - L1MC4 LINE L1 0 8042 7425 198 306 148 19 chr9 73932551 73932659 -43929968 - MIR SINE MIR -32 230 109 1043 111 35 6 chr9 73932662 73932834 -43929793 + L1MB3 LINE L1 6000 6176 -7 219 205 145 36 chr9 73933226 73933309 -43929318 + MIR3 SINE MIR 112 203 -5 1946 102 39 3 chr9 73933432 73933717 -43928910 + AluSx SINE Alu 6 300 -12 1905 132 7 0 chr9 73933723 73934018 -43928609 + AluSx SINE Alu 1 297 -15 965 157 6 0 chr9 73934020 73934179 -43928448 + AluSg/x SINE Alu 137 296 -16 1589 188 17 3 chr9 73934197 73934485 -43928142 + AluJb SINE Alu 1 292 -20 1545 157 30 8 chr9 73934532 73934799 -43927828 - AluJb SINE Alu -39 273 1 2147 106 3 0 chr9 73934807 73935108 -43927519 - AluSq SINE Alu -11 302 1 530 122 12 0 chr9 73935859 73935941 -43926686 + Alu SINE Alu 209 291 -19 238 274 189 7 chr9 73936191 73936344 -43926283 - L2 LINE L2 -1293 2021 1841 320 289 90 42 chr9 73936467 73936633 -43925994 - MIR3 SINE MIR -19 189 16 * 524 189 98 59 chr9 73936614 73936767 -43925860 + MIR SINE MIR 102 260 -2 1936 130 3 7 chr9 73937642 73937941 -43924686 + AluSx SINE Alu 1 298 -14 815 179 0 35 chr9 73937943 73938088 -43924539 - FLAM_C SINE Alu -2 141 2 2328 90 0 0 chr9 73938476 73938776 -43923851 - AluSx SINE Alu -12 300 1 23 78 0 0 chr9 73938964 73939015 -43923612 + AT_rich Low_complexity Low_complexity 1 51 0 2347 97 0 0 chr9 73939019 73939379 -43923248 - AluSx SINE Alu 0 360 1 1343 206 9 35 chr9 73939629 73939810 -43922817 - AluJo SINE Alu -5 307 136 2072 106 0 13 chr9 73939810 73940112 -43922515 - AluSc SINE Alu -11 298 1 1343 206 9 35 chr9 73940112 73940245 -43922382 - AluJo SINE Alu -176 136 1 2184 67 35 0 chr9 73941088 73941372 -43921255 - AluSc SINE Alu -13 296 3 1602 142 0 4 chr9 73941590 73941836 -43920791 + AluJb SINE Alu 12 256 -56 1085 95 7 0 chr9 73941836 73941983 -43920644 - AluSq/x SINE Alu -164 148 1 1887 108 36 26 chr9 73942176 73942482 -43920145 + AluSg SINE Alu 1 309 -1 2099 115 10 0 chr9 73942699 73942994 -43919633 - AluSx SINE Alu -14 298 1 2237 87 7 0 chr9 73943353 73943642 -43918985 - AluSp SINE Alu -22 291 1 1053 324 182 35 chr9 73943660 73945199 -43917428 + L2 LINE L2 1057 2821 -493 910 201 68 60 chr9 73945411 73945660 -43916967 + MIR SINE MIR 12 262 0 22 80 0 0 chr9 73946209 73946259 -43916368 + AT_rich Low_complexity Low_complexity 1 50 0 2395 84 0 0 chr9 73946648 73946959 -43915668 + AluY SINE Alu 1 311 0 577 269 148 0 chr9 73946974 73947156 -43915471 - MIR SINE MIR -10 252 44 546 261 195 5 chr9 73947678 73947893 -43914734 + MIR SINE MIR 2 257 -5 585 245 134 83 chr9 73948851 73949247 -43913380 - L1MC5 LINE L1 -30 7931 7516 2323 212 131 53 chr9 73949254 73949690 -43912937 - L1ME1 LINE L1 -9 6157 5756 2380 61 0 0 chr9 73949690 73949984 -43912643 - AluSg SINE Alu -16 294 1 2323 212 131 53 chr9 73949984 73950212 -43912415 - L1ME1 LINE L1 -410 5756 5425 1416 177 136 0 chr9 73950212 73950477 -43912150 - AluJo SINE Alu 0 302 2 2323 212 131 53 chr9 73950477 73950567 -43912060 - L1ME1 LINE L1 -741 5425 5343 346 299 133 25 chr9 73950584 73950825 -43911802 - L1MC4a LINE L1 -1135 6673 6407 21 71 0 0 chr9 73950991 73951033 -43911594 + AT_rich Low_complexity Low_complexity 1 42 0 2074 104 10 3 chr9 73951065 73951364 -43911263 - AluSq SINE Alu -12 301 1 1789 128 3 35 chr9 73951437 73951747 -43910880 + AluJo SINE Alu 1 301 0 344 242 195 7 chr9 73951815 73951964 -43910663 - L1MC4a LINE L1 -1920 5888 5712 467 284 82 19 chr9 73952038 73952246 -43910381 - L1MC4 LINE L1 -1 8041 7821 543 242 31 10 chr9 73952261 73952422 -43910205 - L1ME2 LINE L1 0 6170 6006 2153 73 0 31 chr9 73952634 73952945 -43909682 - AluSg SINE Alu 0 302 1 1508 173 3 27 chr9 73953014 73953314 -43909313 + AluJo SINE Alu 1 293 -19 1467 154 60 62 chr9 73953368 73953492 -43909135 - L1MB4 LINE L1 0 6180 6057 2231 84 0 13 chr9 73953492 73953791 -43908836 - AluSg SINE Alu -15 295 1 1467 154 60 62 chr9 73953791 73954035 -43908592 - L1MB4 LINE L1 -123 6057 5813 3995 187 60 42 chr9 73954073 73954930 -43907697 - L1MB7 LINE L1 -47 6137 5247 1029 190 0 0 chr9 73954930 73955104 -43907523 - FAM SINE Alu -1 174 1 3995 187 60 42 chr9 73955104 73955578 -43907049 - L1MB7 LINE L1 -937 5247 4783 2347 61 7 0 chr9 73956609 73956904 -43905723 - AluSp SINE Alu -16 297 1 1941 84 8 0 chr9 73957502 73957764 -43904863 + AluSq SINE Alu 39 302 -11 23 0 0 0 chr9 73958932 73958955 -43903672 + AT_rich Low_complexity Low_complexity 1 23 0 229 270 32 16 chr9 73960493 73960556 -43902071 + L2 LINE L2 3229 3292 -21 237 262 131 47 chr9 73962726 73962833 -43899794 - MIR SINE MIR -146 116 1 2253 94 0 0 chr9 73964015 73964313 -43898314 + AluSq SINE Alu 1 298 -15 1587 171 39 0 chr9 73965107 73965387 -43897240 + AluJo SINE Alu 1 291 -21 255 204 0 0 chr9 73966248 73966302 -43896325 + T-rich Low_complexity Low_complexity 4 57 0 265 188 0 42 chr9 73966302 73966398 -43896229 + C-rich Low_complexity Low_complexity 1 92 0 450 202 16 5 chr9 73966398 73966586 -43896041 - AluY SINE Alu -20 291 102 2015 166 82 30 chr9 73966731 73967159 -43895468 - L1MA7 LINE L1 -38 6253 5804 2476 65 0 0 chr9 73967170 73967477 -43895150 - AluY SINE Alu -4 307 1 22 0 0 0 chr9 73967734 73967756 -43894871 + GC_rich Low_complexity Low_complexity 1 22 0 341 217 14 0 chr9 73967778 73967847 -43894780 - MER91B DNA MER1_type -118 72 3 180 0 0 0 chr9 73968737 73968757 -43893870 + (CCA)n Simple_repeat Simple_repeat 3 22 0 667 271 82 20 chr9 73970031 73970275 -43892352 - MIR SINE MIR -2 260 2 290 247 47 35 chr9 73970285 73970370 -43892257 + L1ME LINE L1 5581 5666 -455 397 256 80 29 chr9 73971059 73971196 -43891431 - MIR SINE MIR -31 231 88 1310 245 32 19 chr9 73971988 73972367 -43890260 + MLT1B LTR MaLR 7 390 0 2050 97 3 32 chr9 73977236 73977544 -43885083 + AluSx SINE Alu 1 299 -13 1662 123 32 73 chr9 73979355 73979671 -43882956 + AluSx SINE Alu 1 303 -9 2243 102 0 0 chr9 73979750 73980054 -43882573 - AluSg SINE Alu -6 304 1 350 200 142 0 chr9 73980115 73980235 -43882392 - L1ME4a LINE L1 -30 6091 5955 232 219 14 14 chr9 73980248 73980321 -43882306 + (TA)n Simple_repeat Simple_repeat 1 73 0 2386 96 0 0 chr9 73980355 73980656 -43881971 - AluSx SINE Alu -11 301 1 2249 113 0 7 chr9 73982946 73983248 -43879379 - AluSx SINE Alu -12 300 1 2115 109 0 0 chr9 73983631 73983907 -43878720 + AluSg SINE Alu 1 276 -34 643 125 0 0 chr9 73984159 73984247 -43878380 + AluJb SINE Alu 9 96 -216 1002 183 30 10 chr9 73984370 73984567 -43878060 + AluJb SINE Alu 96 296 -16 1837 125 30 27 chr9 73984658 73984953 -43877674 - AluJo SINE Alu -4 308 13 23 0 0 0 chr9 73985483 73985506 -43877121 + AT_rich Low_complexity Low_complexity 1 23 0 2015 136 13 35 chr9 73988797 73989113 -43873514 - AluSx SINE Alu 0 312 4 2234 107 13 7 chr9 73989120 73989428 -43873199 - AluSp SINE Alu -3 310 1 942 155 54 18 chr9 73989444 73989612 -43873015 + FRAM SINE Alu 1 166 -10 2573 55 0 10 chr9 73989976 73990285 -43872342 - AluY SINE Alu -5 306 1 327 25 0 0 chr9 73991449 73991489 -43871138 + (CA)n Simple_repeat Simple_repeat 2 41 0 1935 123 32 4 chr9 73991548 73991825 -43870802 - AluSx SINE Alu -25 287 3 186 189 0 0 chr9 73992069 73992106 -43870521 + L2 LINE L2 3277 3313 0 198 0 0 0 chr9 73992661 73992683 -43869944 + (CA)n Simple_repeat Simple_repeat 2 23 0 2287 78 0 3 chr9 73992752 73993059 -43869568 - AluY SINE Alu 0 307 2 249 222 59 141 chr9 73995296 73995431 -43867196 + L2 LINE L2 3189 3312 -1 202 171 0 0 chr9 73996436 73996477 -43866150 + L2 LINE L2 3273 3313 0 839 152 0 41 chr9 73996790 73996935 -43865692 - AluJo SINE Alu -4 308 170 752 138 0 0 chr9 73996935 73997044 -43865583 - AluJo SINE Alu -202 110 2 24 32 0 0 chr9 73997052 73997083 -43865544 + AT_rich Low_complexity Low_complexity 1 31 0 2239 117 0 0 chr9 73997405 73997703 -43864924 - AluSx SINE Alu -14 298 1 1054 200 93 4 chr9 73998159 73998384 -43864243 + L1M4 LINE L1 5487 5731 -447 307 317 109 6 chr9 73998400 73998583 -43864044 + L1MC/D LINE L1 5593 5794 -2014 2079 119 3 7 chr9 73998606 73998901 -43863726 + AluSg SINE Alu 1 294 -16 2315 75 0 0 chr9 73999019 73999301 -43863326 + AluSg SINE Alu 14 295 -15 349 192 0 0 chr9 73999689 73999762 -43862865 - LTR30 LTR ERV1 -98 624 552 1585 127 8 67 chr9 74001772 74002040 -43860587 - AluJb SINE Alu -56 256 5 2196 138 0 0 chr9 74002054 74002365 -43860262 - AluSx SINE Alu -1 311 1 3274 118 95 29 chr9 74002804 74003137 -43859490 + MER39B LTR ERV1 8 394 -259 990 115 185 35 chr9 74003137 74003209 -43859418 - MER30 DNA MER1_type 0 230 170 2031 35 4 0 chr9 74003209 74003441 -43859186 - AluY SINE Alu -78 233 1 990 115 185 35 chr9 74003441 74003568 -43859059 - MER30 DNA MER1_type -60 170 1 3274 118 95 29 chr9 74003568 74003794 -43858833 + MER39B LTR ERV1 394 604 -49 229 206 103 0 chr9 74005873 74005953 -43856674 - MIR SINE MIR -76 132 46 246 290 10 10 chr9 74006769 74006869 -43855758 + LTR58 LTR ERV1 350 449 -230 2766 123 31 7 chr9 74007086 74007501 -43855126 - MSTA LTR MaLR 0 428 4 226 272 94 67 chr9 74007522 74007926 -43854701 - L1M4 LINE L1 -2136 4010 3596 496 200 104 86 chr9 74008046 74008102 -43854525 - L1M4 LINE L1 -922 5224 5170 1851 132 24 44 chr9 74008102 74008289 -43854338 - L1PB4 LINE L1 -5 6151 5973 2271 107 0 0 chr9 74008289 74008587 -43854040 - AluSq SINE Alu -15 298 1 1851 132 24 44 chr9 74008587 74008740 -43853887 - L1PB4 LINE L1 -183 5973 5818 496 200 104 86 chr9 74008740 74008903 -43853724 - L1M4 LINE L1 -976 5170 5001 1398 171 52 45 chr9 74008903 74009189 -43853438 - AluJo SINE Alu -16 296 9 756 75 19 9 chr9 74009253 74009360 -43853267 + MER83 LTR ERV1 1 108 -340 1752 173 65 65 chr9 74009361 74009759 -43852868 + MER83 LTR ERV1 50 447 -1 2804 186 37 6 chr9 74009765 74010275 -43852352 + MER83-int LTR ERV1 28 553 -3732 560 204 11 0 chr9 74011929 74012022 -43850605 + MER83-int LTR ERV1 539 632 -4248 246 202 21 53 chr9 74012067 74012161 -43850466 - L1M4 LINE L1 -1249 4897 4807 2384 86 13 0 chr9 74012196 74012499 -43850128 - AluSx SINE Alu -5 307 1 481 283 75 0 chr9 74012499 74012739 -43849888 - L1M4 LINE L1 -1322 4824 4567 315 180 0 0 chr9 74013260 74013321 -43849306 + Charlie7 DNA MER1_type 2491 2551 -61 295 83 0 0 chr9 74013505 74013541 -43849086 + U2 snRNA snRNA 1 36 -152 1365 95 0 6 chr9 74013760 74013939 -43848688 - AluSq SINE Alu -15 298 121 2303 91 0 0 chr9 74013949 74014235 -43848392 - AluSg SINE Alu -24 286 1 2565 204 129 9 chr9 74014258 74015137 -43847490 - L1ME1 LINE L1 -4 6162 5188 1031 168 12 0 chr9 74015140 74015313 -43847314 - FRAM SINE Alu -1 175 1 2296 230 81 67 chr9 74015314 74015891 -43846736 - L1ME1 LINE L1 -948 5198 4630 1994 126 0 58 chr9 74015891 74016216 -43846411 - AluSx SINE Alu -6 306 1 2296 230 81 67 chr9 74016216 74016370 -43846257 - L1ME1 LINE L1 -1516 4630 4480 1979 121 16 20 chr9 74016370 74016676 -43845951 - AluSx SINE Alu -7 305 1 2296 230 81 67 chr9 74016676 74016832 -43845795 - L1ME1 LINE L1 -1666 4480 4328 2070 115 14 0 chr9 74016832 74017119 -43845508 - AluSx SINE Alu -21 291 1 2296 230 81 67 chr9 74017119 74017335 -43845292 - L1ME1 LINE L1 -1818 4328 4078 2121 130 13 0 chr9 74017335 74017643 -43844984 - AluSx SINE Alu 0 312 1 5620 229 61 24 chr9 74017644 74019436 -43843191 - L1M4 LINE L1 -1152 4994 2910 2272 105 0 0 chr9 74019436 74019749 -43842878 - AluSx SINE Alu 0 313 1 5620 229 61 24 chr9 74019749 74019778 -43842849 - L1M4 LINE L1 -3236 2910 2884 262 225 69 94 chr9 74019810 74019970 -43842657 - L1MCb LINE L1 -5753 292 137 850 167 80 0 chr9 74020245 74020407 -43842220 - MER58B DNA MER1_type 0 341 167 1560 97 0 10 chr9 74020931 74021137 -43841490 + AluSg/x SINE Alu 108 311 -1 2521 53 30 3 chr9 74021137 74021440 -43841187 + AluY SINE Alu 1 311 0 1687 170 0 24 chr9 74021449 74021738 -43840889 - AluJo SINE Alu -30 282 1 2258 113 0 0 chr9 74022001 74022294 -43840333 + AluSg SINE Alu 1 293 -17 2523 80 0 0 chr9 74022621 74022932 -43839695 + AluY SINE Alu 1 311 0 2136 121 19 7 chr9 74023219 74023526 -43839101 + AluSx SINE Alu 1 311 -1 903 154 37 6 chr9 74024121 74024283 -43838344 - FRAM SINE Alu -15 161 1 344 184 324 0 chr9 74024520 74024656 -43837971 + MER5A DNA MER1_type 10 189 0 2212 95 6 35 chr9 74024830 74025145 -43837482 - AluSx SINE Alu -6 306 1 457 193 19 189 chr9 74027602 74027709 -43834918 - MER5B DNA MER1_type -1 177 122 1982 131 0 20 chr9 74027709 74028006 -43834621 - AluSx SINE Alu -21 291 1 457 193 19 189 chr9 74028006 74028110 -43834517 - MER5B DNA MER1_type -56 122 2 1104 205 94 37 chr9 74028366 74028664 -43833963 + MLT2D LTR ERVL 100 414 0 242 246 31 0 chr9 74028666 74028731 -43833896 + MLT1B-int LTR MaLR 4 70 -1301 * 2324 212 102 111 chr9 74028722 74029689 -43832938 + MLT1B-int LTR MaLR 412 1370 -1 1283 189 111 39 chr9 74029694 74029852 -43832775 + MLT1B LTR MaLR 5 150 -240 2496 60 0 3 chr9 74029852 74030150 -43832477 + AluY SINE Alu 1 297 -14 1283 189 111 39 chr9 74030150 74030351 -43832276 + MLT1B LTR MaLR 150 390 0 886 180 84 0 chr9 74030477 74030644 -43831983 - MER20 DNA MER1_type 0 219 39 2372 97 0 0 chr9 74030932 74031241 -43831386 - AluY SINE Alu -2 309 1 7841 204 59 34 chr9 74031241 74031566 -43831061 - L1MB3 LINE L1 -150 6269 5954 2255 131 0 0 chr9 74031566 74031878 -43830749 + AluSx SINE Alu 1 312 0 7841 204 59 34 chr9 74031878 74032817 -43829810 - L1MB3 LINE L1 -465 5954 5040 1955 168 0 7 chr9 74032817 74033120 -43829507 - AluJb SINE Alu -11 301 1 7841 204 59 34 chr9 74033120 74033623 -43829004 - L1MB3 LINE L1 -1379 5040 4551 1501 131 102 57 chr9 74033623 74033906 -43828721 - AluSx SINE Alu -16 296 1 7841 204 59 34 chr9 74033906 74034957 -43827670 - L1MB3 LINE L1 -1868 4551 3388 22 70 0 0 chr9 74035029 74035072 -43827555 + AT_rich Low_complexity Low_complexity 1 43 0 821 173 0 54 chr9 74035106 74035291 -43827336 - L1MB3 LINE L1 -4522 1862 1688 361 289 33 0 chr9 74035291 74035412 -43827215 - L1 LINE L1 -2582 3564 3440 353 117 0 33 chr9 74035453 74035513 -43827114 - L1M4c LINE L1 -4522 1862 1805 3788 185 63 38 chr9 74035527 74036298 -43826329 - L1M4c LINE L1 -4704 1680 879 2030 121 34 7 chr9 74036298 74036595 -43826032 - AluSq SINE Alu -8 305 1 3788 185 63 38 chr9 74036595 74036769 -43825858 - L1M4c LINE L1 -5505 879 711 227 234 172 0 chr9 74036875 74036939 -43825688 - L2 LINE L2 0 3313 3239 237 274 160 19 chr9 74036947 74037053 -43825574 + L2 LINE L2 3193 3313 0 817 159 0 15 chr9 74038142 74038274 -43824353 + FLAM_A SINE Alu 1 130 -3 336 189 63 21 chr9 74038289 74038384 -43824243 - Charlie8 DNA MER1_type -2226 191 93 367 197 26 0 chr9 74038406 74038482 -43824145 - HsTC2 DNA Tc2 -1814 84 7 23 33 0 0 chr9 74039240 74039270 -43823357 + AT_rich Low_complexity Low_complexity 1 30 0 1890 155 13 7 chr9 74039357 74039667 -43822960 + AluJb SINE Alu 1 312 0 855 254 153 40 chr9 74039705 74040074 -43822553 + MLT1K LTR MaLR 3 428 -48 2120 116 14 3 chr9 74040074 74040368 -43822259 - AluSx SINE Alu -14 298 2 855 254 153 40 chr9 74040368 74040424 -43822203 + MLT1K LTR MaLR 428 476 0 1568 200 7 18 chr9 74040787 74041072 -43821555 + AluJo SINE Alu 1 282 -30 21 57 0 0 chr9 74041076 74041111 -43821516 + AT_rich Low_complexity Low_complexity 1 35 0 1318 135 154 19 chr9 74041117 74041384 -43821243 + L1MA9 LINE L1 6005 6307 -5 1094 136 0 0 chr9 74042700 74042847 -43819780 + AluJo SINE Alu 1 147 -165 21 36 0 0 chr9 74042850 74042878 -43819749 + AT_rich Low_complexity Low_complexity 1 28 0 204 184 0 0 chr9 74044663 74044712 -43817915 + (TG)n Simple_repeat Simple_repeat 2 50 0 1040 203 38 42 chr9 74044842 74045078 -43817549 - AluJo SINE Alu -11 301 67 2239 111 0 0 chr9 74045079 74045377 -43817250 + AluSg1 SINE Alu 2 299 -10 2251 80 3 20 chr9 74045404 74045704 -43816923 + AluY SINE Alu 1 295 -16 363 250 0 38 chr9 74045704 74045784 -43816843 - AluJo SINE Alu -225 77 1 228 206 137 0 chr9 74046212 74046285 -43816342 + L1ME3 LINE L1 6048 6130 -32 2457 72 0 10 chr9 74046287 74046594 -43816033 + AluSc SINE Alu 1 304 -5 1687 198 54 6 chr9 74046920 74047254 -43815373 + ERVL LTR ERVL 4717 5066 -698 1665 102 4 4 chr9 74047503 74047728 -43814899 + AluSp SINE Alu 77 301 -12 229 247 22 0 chr9 74047762 74047851 -43814776 - L1MC4 LINE L1 -1337 6705 6615 2798 165 12 0 chr9 74047946 74048430 -43814197 + L1MB3 LINE L1 5685 6174 -9 353 157 0 29 chr9 74048770 74048840 -43813787 - LTR41 LTR ERVL 0 773 706 985 150 0 25 chr9 74048861 74049021 -43813606 + FAM SINE Alu 10 165 -20 637 227 37 18 chr9 74049555 74049718 -43812909 - LTR41 LTR ERVL -607 166 1 1777 141 3 27 chr9 74050153 74050451 -43812176 + AluJo SINE Alu 1 291 -21 1288 155 0 24 chr9 74051123 74051336 -43811291 - AluJo SINE Alu -104 208 1 686 195 81 99 chr9 74051358 74051579 -43811048 + MER20 DNA MER1_type 1 217 -2 453 262 8 8 chr9 74051880 74052002 -43810625 + LTR67 LTR ERVL 429 550 -7 2290 115 3 6 chr9 74053261 74053574 -43809053 - AluSq SINE Alu -1 312 1 299 194 20 20 chr9 74053890 74053988 -43808639 - AluSq SINE Alu -67 236 139 1908 119 0 8 chr9 74054181 74054442 -43808185 - AluSx SINE Alu -15 297 39 2419 56 0 30 chr9 74054728 74055030 -43807597 - AluY SINE Alu -18 293 1 22 35 0 0 chr9 74055513 74055542 -43807085 + AT_rich Low_complexity Low_complexity 1 29 0 574 149 18 61 chr9 74055676 74055790 -43806837 - L1MC1 LINE L1 0 6333 6225 447 279 13 80 chr9 74056367 74056604 -43806023 + L1ME3A LINE L1 5928 6148 -22 2252 104 10 13 chr9 74056618 74056926 -43805701 + AluSp SINE Alu 5 311 -2 24 32 0 0 chr9 74057258 74057289 -43805338 + AT_rich Low_complexity Low_complexity 1 31 0 1984 107 80 25 chr9 74061126 74061453 -43801174 + L1MA2 LINE L1 5959 6303 -1 314 267 23 0 chr9 74061801 74061887 -43800740 - L1MC4 LINE L1 -1341 6701 6614 5082 144 87 10 chr9 74061888 74062196 -43800431 + Tigger4(Zombi) DNA MER2_type 1710 1993 -738 2330 102 7 0 chr9 74062196 74062501 -43800126 + AluSp SINE Alu 1 307 -6 5082 144 87 10 chr9 74062501 74063109 -43799518 + Tigger4(Zombi) DNA MER2_type 1993 2697 -34 1029 93 0 7 chr9 74063109 74063249 -43799378 + AluSg/x SINE Alu 162 300 -10 1577 178 0 11 chr9 74063528 74063798 -43798829 + AluJb SINE Alu 6 272 -40 1200 208 11 11 chr9 74063798 74064062 -43798565 + L1M4 LINE L1 5558 5821 -363 1033 222 24 66 chr9 74064116 74064131 -43798496 + L1MD3 LINE L1 7665 7679 -316 2240 107 0 3 chr9 74064131 74064429 -43798198 + AluSg SINE Alu 1 297 -13 1033 222 24 66 chr9 74064429 74064747 -43797880 + L1MD3 LINE L1 7679 7984 -11 2214 128 0 0 chr9 74065312 74065618 -43797009 - AluSx SINE Alu -2 310 5 870 133 35 14 chr9 74065908 74066051 -43796576 + FAM SINE Alu 23 168 -17 266 652 0 0 chr9 74066064 74066242 -43796385 + (CATA)n Simple_repeat Simple_repeat 3 180 0 1780 174 33 33 chr9 74066635 74066968 -43795659 - MER1B DNA MER1_type 0 337 5 436 252 67 15 chr9 74067074 74067209 -43795418 + MLT1H LTR MaLR 21 162 -387 895 181 57 6 chr9 74067290 74067467 -43795160 + AluJo SINE Alu 21 206 -106 2062 142 0 0 chr9 74067514 74067816 -43794811 + AluSx SINE Alu 1 302 -10 2460 67 0 7 chr9 74067818 74068116 -43794511 + AluY SINE Alu 1 296 -15 208 165 55 0 chr9 74068125 74068216 -43794411 + (TA)n Simple_repeat Simple_repeat 1 96 0 341 104 90 0 chr9 74068227 74068371 -43794256 + (TA)n Simple_repeat Simple_repeat 2 158 0 2082 131 0 10 chr9 74068408 74068721 -43793906 - AluSx SINE Alu -2 310 1 703 115 32 0 chr9 74068841 74068998 -43793629 + (TA)n Simple_repeat Simple_repeat 1 162 0 2350 71 0 14 chr9 74068998 74069293 -43793334 - AluY SINE Alu -20 291 1 4289 80 4 2 chr9 74069392 74069945 -43792682 - MER41A LTR ERV1 0 554 1 256 188 0 0 chr9 74071247 74071295 -43791332 - L2 LINE L2 0 3313 3266 24 0 0 0 chr9 74071905 74071929 -43790698 + GC_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chr9 74071975 74072005 -43790622 + GC_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr9 74072271 74072292 -43790335 + GC_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr9 74072797 74072817 -43789810 + (CCG)n Simple_repeat Simple_repeat 2 21 0 218 225 9 36 chr9 74073016 74073127 -43789500 + (CCG)n Simple_repeat Simple_repeat 2 109 0 189 0 0 0 chr9 74073190 74073211 -43789416 + (CGGG)n Simple_repeat Simple_repeat 4 24 0 384 274 59 26 chr9 74073770 74073923 -43788704 - MIR3 SINE MIR -21 187 30 221 320 33 33 chr9 74073968 74074090 -43788537 + L2 LINE L2 3151 3272 0 21 0 0 0 chr9 74074309 74074330 -43788297 + AT_rich Low_complexity Low_complexity 1 21 0 2408 77 3 0 chr9 74074408 74074718 -43787909 + AluY SINE Alu 1 311 0 1197 169 165 0 chr9 74074730 74074966 -43787661 + AluJo SINE Alu 1 275 -37 2551 70 0 3 chr9 74074996 74075308 -43787319 + AluSx SINE Alu 2 312 0 2368 55 3 42 chr9 74075430 74075740 -43786887 + AluY SINE Alu 3 300 -11 2303 80 7 0 chr9 74076018 74076307 -43786320 + AluSc SINE Alu 1 291 -18 213 234 219 0 chr9 74077636 74077700 -43784927 - MIR SINE MIR -183 79 2 2297 121 0 6 chr9 74077796 74078110 -43784517 + AluSx SINE Alu 1 312 0 1277 119 0 0 chr9 74078797 74078973 -43783654 + AluSg/x SINE Alu 132 307 -5 1394 172 31 74 chr9 74079202 74079528 -43783099 - AluJo SINE Alu 0 312 1 1593 154 70 11 chr9 74079594 74079879 -43782748 - AluJb SINE Alu -10 302 1 275 0 29 0 chr9 74079883 74079918 -43782709 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 2234 82 0 14 chr9 74079919 74080200 -43782427 - AluSc SINE Alu -32 277 1 2655 48 0 3 chr9 74080205 74080514 -43782113 - AluY SINE Alu -3 308 1 2192 62 58 0 chr9 74080525 74080800 -43781827 - AluY SINE Alu -20 291 1 2082 162 91 5 chr9 74081493 74081888 -43780739 - MSTB1 LTR MaLR 0 432 4 305 204 0 0 chr9 74081888 74081937 -43780690 - MLT1I LTR MaLR -263 146 98 2221 167 73 63 chr9 74082019 74082539 -43780088 - L1MB2 LINE L1 -7 6164 5640 21 0 0 0 chr9 74082550 74082571 -43780056 + AT_rich Low_complexity Low_complexity 1 21 0 1652 37 9 19 chr9 74082571 74082774 -43779853 - L1PA5 LINE L1 -2 6152 5950 351 0 0 0 chr9 74082774 74082813 -43779814 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1652 37 9 19 chr9 74082813 74082824 -43779803 - L1PA5 LINE L1 -204 5950 5940 873 37 65 0 chr9 74082888 74082995 -43779632 + AluY SINE Alu 1 114 -197 757 178 0 0 chr9 74083638 74083756 -43778871 - FLAM_C SINE Alu -15 118 1 2623 54 0 6 chr9 74083762 74084075 -43778552 - AluY SINE Alu 0 311 1 1088 171 23 9 chr9 74084639 74084856 -43777771 - L1MC3 LINE L1 0 7785 7566 * 1596 185 102 8 chr9 74084842 74085215 -43777412 - L1MB5 LINE L1 0 6672 6265 1281 176 12 113 chr9 74085246 74085456 -43777171 - L1MB5 LINE L1 -592 6086 5856 2322 76 28 0 chr9 74085456 74085746 -43776881 - AluSq SINE Alu -7 306 9 1281 176 12 113 chr9 74085746 74086143 -43776484 - L1MB5 LINE L1 -822 5856 5525 455 103 0 0 chr9 74086143 74086211 -43776416 - Alu SINE Alu -15 295 228 2302 63 4 0 chr9 74086211 74086481 -43776146 - AluY SINE Alu -40 271 1 1213 23 0 0 chr9 74086484 74086615 -43776012 - AluY SINE Alu -180 131 1 1419 174 121 11 chr9 74086618 74086882 -43775745 - AluSg SINE Alu -17 293 1 2198 222 4 28 chr9 74086882 74087414 -43775213 - L1MB5 LINE L1 -1107 5537 5019 963 182 76 87 chr9 74087408 74087526 -43775101 - L1MB5 LINE L1 -3160 3484 3366 * 2204 123 0 0 chr9 74087526 74087818 -43774809 + AluSg SINE Alu 1 292 -18 963 182 76 87 chr9 74087818 74088024 -43774603 - L1MB5 LINE L1 -3278 3366 3159 2242 88 6 64 chr9 74088024 74088353 -43774274 + AluSq SINE Alu 3 312 -1 963 182 76 87 chr9 74088353 74088487 -43774140 - L1MB5 LINE L1 -3485 3159 2923 2126 109 0 0 chr9 74088509 74088792 -43773835 - AluSc SINE Alu 0 309 27 1177 125 0 0 chr9 74088795 74088947 -43773680 - FRAM SINE Alu -30 146 1 1734 138 0 15 chr9 74088952 74089115 -43773512 - AluSg SINE Alu -16 294 135 2485 60 17 0 chr9 74089115 74089414 -43773213 - AluSp SINE Alu -9 304 1 1734 138 0 15 chr9 74089414 74089510 -43773117 - AluSg SINE Alu -175 135 39 2152 183 64 42 chr9 74089510 74089555 -43773072 - L1MB5 LINE L1 -4852 1794 1751 1726 180 3 0 chr9 74089555 74089844 -43772783 - AluJb SINE Alu -16 296 7 2152 183 64 42 chr9 74089844 74090371 -43772256 - L1MB5 LINE L1 -4895 1751 1209 1216 167 31 14 chr9 74090371 74090593 -43772034 - AluJo SINE Alu 0 312 87 1231 211 84 6 chr9 74090593 74090949 -43771678 - L1MB5 LINE L1 -5304 1238 855 2238 127 0 0 chr9 74090950 74091257 -43771370 - AluSx SINE Alu -4 308 2 765 167 90 0 chr9 74091259 74091403 -43771224 - FRAM SINE Alu -12 164 8 1048 278 137 54 chr9 74091490 74092236 -43770391 - L1MB5 LINE L1 -5727 815 8 561 183 76 76 chr9 74092253 74092384 -43770243 - FLAM_A SINE Alu -2 131 1 27 29 0 0 chr9 74092439 74092473 -43770154 + AT_rich Low_complexity Low_complexity 1 34 0 2603 62 7 0 chr9 74092676 74092984 -43769643 - AluSg SINE Alu 0 310 1 223 169 186 17 chr9 74093519 74093578 -43769049 - MIR3 SINE MIR -29 179 111 1072 146 200 43 chr9 74093628 74093827 -43768800 + MER33 DNA MER1_type 1 258 -2327 2286 101 7 0 chr9 74093827 74094123 -43768504 + AluSp SINE Alu 1 298 -15 1072 146 200 43 chr9 74094123 74094203 -43768424 + MER33 DNA MER1_type 258 324 0 26 30 0 0 chr9 74096059 74096092 -43766535 + AT_rich Low_complexity Low_complexity 1 33 0 2581 122 32 0 chr9 74096161 74096571 -43766056 - L1MA2 LINE L1 0 6304 5882 2425 84 3 0 chr9 74096944 74097243 -43765384 - AluSp SINE Alu -12 301 2 194 0 39 0 chr9 74097243 74097269 -43765358 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 2137 110 14 0 chr9 74097270 74097552 -43765075 - AluSx SINE Alu -26 286 1 2055 117 3 0 chr9 74097709 74097991 -43764636 - AluSx SINE Alu -29 283 1 1620 131 0 37 chr9 74098759 74099029 -43763598 + AluSx SINE Alu 46 306 0 306 277 252 17 chr9 74099285 74099642 -43762985 + L2 LINE L2 2872 3312 -1 1923 163 3 3 chr9 74099886 74100192 -43762435 - AluJo SINE Alu -6 306 1 221 335 15 7 chr9 74100276 74100470 -43762157 + L2 LINE L2 2664 2903 -411 1486 190 36 23 chr9 74100592 74100897 -43761730 + AluSp SINE Alu 1 309 -4 1206 142 0 0 chr9 74100897 74101073 -43761554 + AluSg/x SINE Alu 132 307 -3 491 181 61 45 chr9 74101073 74101319 -43761308 - L1MA10 LINE L1 -6 6306 5946 451 165 198 0 chr9 74101320 74101441 -43761186 - L1ME LINE L1 -358 5806 5662 2133 121 3 7 chr9 74101471 74101777 -43760850 - AluSx SINE Alu -7 305 1 205 282 17 15 chr9 74102117 74102195 -43760432 + MIR SINE MIR 68 146 -68 31 0 0 0 chr9 74104828 74104859 -43757768 + AT_rich Low_complexity Low_complexity 1 31 0 272 37 74 0 chr9 74105878 74105932 -43756695 + (TA)n Simple_repeat Simple_repeat 2 59 0 2477 38 0 7 chr9 74105932 74106219 -43756408 - AluY SINE Alu -26 285 1 941 239 210 24 chr9 74106363 74106820 -43755807 + L1ME2 LINE L1 5608 6149 -15 25 90 0 0 chr9 74107087 74107154 -43755473 + GC_rich Low_complexity Low_complexity 1 67 0 22 88 0 0 chr9 74107163 74107220 -43755407 + GC_rich Low_complexity Low_complexity 1 57 0 22 0 0 0 chr9 74107321 74107343 -43755284 + GC_rich Low_complexity Low_complexity 1 22 0 292 209 16 12 chr9 74108194 74108276 -43754351 + AluS SINE Alu 1 57 -246 189 0 0 0 chr9 74108276 74108297 -43754330 + (TA)n Simple_repeat Simple_repeat 2 22 0 270 0 0 0 chr9 74108297 74108327 -43754300 + (TG)n Simple_repeat Simple_repeat 2 31 0 1338 196 90 4 chr9 74108333 74108599 -43754028 - AluJo SINE Alu -23 289 1 374 305 62 0 chr9 74108660 74108788 -43753839 - L2 LINE L2 -9 3304 3169 282 268 38 17 chr9 74108827 74108984 -43753643 - L2 LINE L2 -272 3000 2842 522 247 79 57 chr9 74109012 74109571 -43753056 - L2 LINE L2 -20 3293 2644 389 286 77 26 chr9 74109596 74109830 -43752797 - L2 LINE L2 -540 2774 2529 2236 95 0 54 chr9 74110021 74110337 -43752290 + AluSg SINE Alu 1 299 -11 2314 101 3 0 chr9 74110597 74110895 -43751732 + AluSx SINE Alu 1 299 -13 2031 128 0 29 chr9 74111472 74111778 -43750849 - AluJo SINE Alu -15 297 1 1654 163 3 75 chr9 74111845 74112165 -43750462 - AluJb SINE Alu -10 302 6 1630 181 22 0 chr9 74112335 74112640 -43749987 - AluJb SINE Alu 0 313 3 315 259 104 22 chr9 74112781 74112916 -43749711 + L2 LINE L2 344 489 -2825 2224 187 31 9 chr9 74113147 74113591 -43749036 - MER65C LTR ERV1 0 461 8 1248 60 78 24 chr9 74113884 74114050 -43748577 + AluSx SINE Alu 1 175 -137 1829 109 4 23 chr9 74114051 74114169 -43748458 - AluSq SINE Alu -61 252 133 2244 100 0 13 chr9 74114169 74114469 -43748158 - AluSg SINE Alu -14 296 1 2380 97 0 3 chr9 74114471 74114780 -43747847 - AluSg SINE Alu -2 308 1 1829 109 4 23 chr9 74114780 74114915 -43747712 - AluSq SINE Alu -181 132 1 1093 113 0 0 chr9 74114916 74115058 -43747569 - AluSq/x SINE Alu -171 142 1 2200 125 0 0 chr9 74115202 74115498 -43747129 - AluSq SINE Alu -17 296 1 1972 92 0 0 chr9 74115551 74115801 -43746826 + AluSx SINE Alu 50 299 -13 2237 81 0 33 chr9 74115933 74116240 -43746387 - AluY SINE Alu -14 297 1 2482 66 0 17 chr9 74116243 74116544 -43746083 - AluSc SINE Alu -13 296 1 273 299 0 11 chr9 74116786 74116873 -43745754 - L1MC4 LINE L1 -157 7885 7800 763 186 112 132 chr9 74116967 74117090 -43745537 - LTR56 LTR ERV1 0 445 321 2273 95 7 3 chr9 74117090 74117386 -43745241 - AluSg SINE Alu -13 297 1 763 186 112 132 chr9 74117386 74117594 -43745033 - LTR56 LTR ERV1 -124 321 110 2242 117 13 0 chr9 74117594 74117901 -43744726 + AluSq SINE Alu 1 311 -2 2456 84 0 3 chr9 74117909 74118218 -43744409 + AluSx SINE Alu 3 310 -2 763 186 112 132 chr9 74118218 74118322 -43744305 - LTR56 LTR ERV1 -342 103 9 552 252 116 43 chr9 74118339 74118640 -43743987 - L1MC4 LINE L1 -325 7717 7278 2941 6 0 0 chr9 74118767 74119078 -43743549 + AluYa5 SINE Alu 1 311 0 428 236 5 90 chr9 74119078 74119290 -43743337 - HAL1b LINE L1 -251 1097 904 2432 81 0 31 chr9 74119296 74119618 -43743009 - AluSx SINE Alu 0 312 1 2372 99 0 13 chr9 74120113 74120426 -43742201 - AluSx SINE Alu -3 309 1 660 248 62 31 chr9 74120529 74120755 -43741872 - LTR16A LTR ERVL -98 352 120 907 291 95 23 chr9 74121055 74121598 -43741029 - L1 LINE L1 -1169 4977 4398 2295 102 0 0 chr9 74121736 74122020 -43740607 + AluSx SINE Alu 1 284 -28 250 132 38 0 chr9 74122075 74122128 -43740499 + (TA)n Simple_repeat Simple_repeat 1 55 0 478 171 267 0 chr9 74122132 74122237 -43740390 + AluJb SINE Alu 134 266 -46 * 744 193 0 14 chr9 74122234 74122374 -43740253 + AluJb SINE Alu 175 312 0 240 211 148 31 chr9 74122788 74122916 -43739711 - MER102b DNA MER1_type -2 339 197 1988 122 4 7 chr9 74123003 74123281 -43739346 - AluSq SINE Alu -15 298 22 2250 112 0 3 chr9 74123558 74123862 -43738765 - AluSg SINE Alu -7 303 1 1556 93 198 27 chr9 74124025 74124283 -43738344 + AluSg1 SINE Alu 1 302 -7 28 0 0 0 chr9 74124445 74124473 -43738154 + AT_rich Low_complexity Low_complexity 1 28 0 1866 150 20 0 chr9 74124486 74124779 -43737848 - AluJb SINE Alu -13 299 1 1863 136 20 36 chr9 74125428 74125729 -43736898 - AluJb SINE Alu -16 296 1 1883 123 55 10 chr9 74125738 74126030 -43736597 - AluSq SINE Alu -8 305 1 2094 105 0 60 chr9 74126452 74126767 -43735860 - AluSx SINE Alu -16 296 1 567 255 212 0 chr9 74126906 74127090 -43735537 - MER58A DNA MER1_type -1 223 1 251 345 11 0 chr9 74127353 74127440 -43735187 + L2 LINE L2 3193 3280 -33 649 220 0 8 chr9 74127500 74127632 -43734995 + AluJo/FLAM SINE Alu 2 132 -170 2306 93 0 7 chr9 74127634 74127935 -43734692 + AluSg SINE Alu 1 299 -11 23 0 0 0 chr9 74128054 74128077 -43734550 + AT_rich Low_complexity Low_complexity 1 23 0 2239 119 3 0 chr9 74128272 74128575 -43734052 - AluSp SINE Alu -9 304 1 823 180 137 17 chr9 74128598 74128831 -43733796 - L1ME3A LINE L1 -222 5948 5688 1619 195 30 61 chr9 74128852 74129079 -43733548 - MLT1B LTR MaLR -7 383 172 1871 161 6 22 chr9 74129079 74129396 -43733231 - AluJo SINE Alu 0 312 1 1619 195 30 61 chr9 74129396 74129563 -43733064 - MLT1B LTR MaLR -218 172 1 516 294 67 11 chr9 74129577 74129757 -43732870 - L1ME3A LINE L1 -520 5650 5461 1926 146 10 3 chr9 74129758 74130066 -43732561 + AluSx SINE Alu 1 310 -2 892 226 5 41 chr9 74130068 74130289 -43732338 + MLT1A2 LTR MaLR 155 367 -7 231 290 0 29 chr9 74130568 74130637 -43731990 - Charlie8 DNA MER1_type -1000 1417 1351 2359 99 0 0 chr9 74130652 74130954 -43731673 - AluSx SINE Alu -10 302 1 23 0 0 0 chr9 74131321 74131344 -43731283 + AT_rich Low_complexity Low_complexity 1 23 0 2146 137 33 9 chr9 74131425 74131754 -43730873 - MER1B DNA MER1_type 0 337 1 1006 169 16 5 chr9 74131755 74131944 -43730683 - MER4C LTR ERV1 0 465 275 272 248 15 44 chr9 74131950 74132068 -43730559 - LTR59 LTR ERV1 -158 541 344 * 1479 138 24 123 chr9 74132038 74132256 -43730371 - MER4A LTR ERV1 -201 359 121 1909 122 0 0 chr9 74132256 74132518 -43730109 + AluSx SINE Alu 4 265 -47 243 0 0 0 chr9 74132519 74132546 -43730081 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1479 138 24 123 chr9 74132546 74132784 -43729843 - MER4A LTR ERV1 -438 122 1 6189 166 37 21 chr9 74132789 74133922 -43728705 + Ricksha DNA DNA 92 1242 -2004 1601 157 25 14 chr9 74133924 74134210 -43728417 + AluJo SINE Alu 2 290 -22 195 239 0 0 chr9 74134211 74134278 -43728349 + (TA)n Simple_repeat Simple_repeat 2 68 0 271 170 0 0 chr9 74134280 74134327 -43728300 + Ricksha DNA DNA 1237 1283 -1963 249 267 0 35 chr9 74134431 74134464 -43728163 - L1ME3A LINE L1 -743 5421 5388 2169 123 0 0 chr9 74134464 74134774 -43727853 - AluSg SINE Alu 0 310 1 249 267 0 35 chr9 74134774 74134826 -43727801 - L1ME3A LINE L1 -776 5388 5339 2082 110 10 0 chr9 74135424 74135715 -43726912 - AluSx SINE Alu -18 294 1 2349 57 0 13 chr9 74135800 74136100 -43726527 - AluY SINE Alu -15 296 1 1844 138 28 0 chr9 74136134 74136416 -43726211 - AluSx SINE Alu -22 290 1 297 227 171 0 chr9 74136446 74136534 -43726093 - L1MC5 LINE L1 -886 7075 6973 840 234 66 16 chr9 74136544 74136848 -43725779 - L1ME3A LINE L1 -824 5322 5004 * 917 161 44 10 chr9 74136831 74137014 -43725613 - L1MB4 LINE L1 -211 5969 5777 260 27 27 0 chr9 74137014 74137051 -43725576 + (TA)n Simple_repeat Simple_repeat 1 38 0 917 161 44 10 chr9 74137051 74137072 -43725555 - L1MB4 LINE L1 -403 5777 5758 1686 155 40 4 chr9 74137088 74137366 -43725261 - AluJb SINE Alu -24 288 1 3636 186 21 111 chr9 74137367 74137556 -43725071 - L1MB4 LINE L1 -977 5169 4965 886 186 11 45 chr9 74137556 74137733 -43724894 - FAM SINE Alu -4 171 1 3636 186 21 111 chr9 74137733 74137923 -43724704 - L1MB4 LINE L1 -1181 4965 4760 2285 80 13 0 chr9 74137923 74138223 -43724404 - AluSp SINE Alu -9 304 1 3636 186 21 111 chr9 74138223 74138241 -43724386 - L1MB4 LINE L1 -1386 4760 4742 1784 146 0 20 chr9 74138241 74138536 -43724091 - AluJb SINE Alu -23 289 1 3636 186 21 111 chr9 74138536 74138787 -43723840 - L1MB4 LINE L1 -1404 4742 4470 2064 176 85 0 chr9 74138787 74139185 -43723442 - MSTB1 LTR MaLR 0 432 1 3636 186 21 111 chr9 74139185 74139327 -43723300 - L1MB4 LINE L1 -1676 4470 4317 2228 89 10 0 chr9 74139327 74139619 -43723008 + AluSq SINE Alu 1 295 -18 1526 158 23 46 chr9 74139619 74139804 -43722823 - AluJo SINE Alu -14 298 121 1821 141 7 3 chr9 74139804 74140088 -43722539 + AluSx SINE Alu 1 285 -27 1526 158 23 46 chr9 74140088 74140205 -43722422 - AluJo SINE Alu -191 121 3 3636 186 21 111 chr9 74140205 74140331 -43722296 - L1MB4 LINE L1 -1828 4318 4182 2010 140 3 3 chr9 74140331 74140638 -43721989 - AluSx SINE Alu -5 307 1 3636 186 21 111 chr9 74140638 74140964 -43721663 - L1MB4 LINE L1 -1964 4182 4033 2027 98 29 0 chr9 74141477 74141778 -43720849 + AluSx SINE Alu 1 309 0 341 265 183 18 chr9 74141806 74142085 -43720542 - L1ME4a LINE L1 -182 5939 5615 1779 116 84 0 chr9 74142092 74142367 -43720260 - AluSx SINE Alu -14 298 1 2070 104 0 0 chr9 74142503 74142824 -43719803 + AluSx SINE Alu 3 323 0 1446 179 0 72 chr9 74144629 74144947 -43717680 + AluJo SINE Alu 1 295 -17 962 243 92 62 chr9 74145235 74145298 -43717329 - LTR48B LTR ERV1 -3 641 581 2132 106 3 0 chr9 74145298 74145590 -43717037 + AluSx SINE Alu 1 293 -19 962 243 92 62 chr9 74145590 74146091 -43716536 - LTR48B LTR ERV1 -63 581 2 769 245 56 60 chr9 74146588 74146890 -43715737 - MLT1I LTR MaLR -11 398 98 1242 144 0 47 chr9 74146911 74146942 -43715685 + AluJo SINE Alu 1 32 -280 3954 81 49 2 chr9 74146942 74147471 -43715156 - MER41A LTR ERV1 0 554 1 1242 144 0 47 chr9 74147471 74147654 -43714973 + AluJo SINE Alu 32 205 -107 2116 82 29 0 chr9 74147989 74148268 -43714359 - AluSp SINE Alu -26 287 1 21 0 0 0 chr9 74148276 74148297 -43714330 + AT_rich Low_complexity Low_complexity 1 21 0 1039 232 93 70 chr9 74148480 74149005 -43713622 + MER34 LTR ERV1 1 537 -5 543 304 38 13 chr9 74150140 74150298 -43712329 + MIR3 SINE MIR 21 182 -26 213 292 62 26 chr9 74150385 74150498 -43712129 + L2 LINE L2 1057 1173 -2141 328 298 177 6 chr9 74150612 74150793 -43711834 - MIR SINE MIR -19 243 32 2089 129 0 0 chr9 74150917 74151226 -43711401 - AluSx SINE Alu -3 309 1 2398 80 0 10 chr9 74151581 74151894 -43710733 - AluSg SINE Alu 0 310 1 23 86 0 0 chr9 74152678 74152736 -43709891 + AT_rich Low_complexity Low_complexity 1 58 0 1388 109 0 0 chr9 74152822 74153014 -43709613 + AluSc SINE Alu 1 192 -117 479 145 0 24 chr9 74153339 74153422 -43709205 - AluY SINE Alu -229 82 2 1631 124 8 0 chr9 74153577 74153845 -43708782 + AluSx SINE Alu 41 312 0 482 283 54 85 chr9 74154188 74154547 -43708080 - L1MEd LINE L1 -5090 1029 687 2162 106 0 0 chr9 74154547 74154840 -43707787 - AluSx SINE Alu -19 293 1 482 283 54 85 chr9 74154840 74154964 -43707663 - L1MEd LINE L1 -5432 687 561 545 98 87 43 chr9 74155007 74155099 -43707528 + Charlie3 DNA MER1_type 2617 2712 0 2311 50 13 10 chr9 74155578 74155881 -43706746 - AluY SINE Alu -7 304 1 378 171 31 36 chr9 74155982 74156099 -43706528 + Alu SINE Alu 1 46 -253 * 570 236 117 82 chr9 74156081 74156483 -43706144 + MER34 LTR ERV1 50 465 -77 21 0 0 0 chr9 74156991 74157012 -43705615 + AT_rich Low_complexity Low_complexity 1 21 0 188 274 32 16 chr9 74157204 74157266 -43705361 + MIR SINE MIR 48 110 -152 428 254 49 49 chr9 74157334 74157519 -43705108 - L1MC5 LINE L1 -54 7907 7723 2066 103 0 57 chr9 74158426 74158757 -43703870 + AluSx SINE Alu 1 312 0 197 32 0 32 chr9 74158820 74158851 -43703776 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 21 0 0 0 chr9 74159317 74159338 -43703289 + AT_rich Low_complexity Low_complexity 1 21 0 282 191 12 71 chr9 74159378 74159462 -43703165 - L1MC5 LINE L1 -47 7914 7836 1174 125 0 11 chr9 74159479 74159655 -43702972 - AluJb SINE Alu -12 300 127 1904 133 7 7 chr9 74160047 74160355 -43702272 - AluSq SINE Alu -5 308 1 1904 134 0 16 chr9 74160538 74160844 -43701783 + AluJb SINE Alu 1 301 -11 251 281 59 59 chr9 74161013 74161148 -43701479 - MIR SINE MIR -71 191 57 802 163 0 0 chr9 74161667 74161796 -43700831 - FLAM_A SINE Alu -4 129 1 1310 130 15 5 chr9 74161977 74162177 -43700450 - AluSg/x SINE Alu -1 311 110 716 189 6 85 chr9 74162359 74162523 -43700104 + FRAM SINE Alu 1 151 -15 1566 197 3 0 chr9 74162852 74163146 -43699481 + AluJo SINE Alu 1 295 -17 552 243 18 0 chr9 74163389 74163500 -43699127 + FLAM_A SINE Alu 1 113 -29 2171 98 0 13 chr9 74163946 74164251 -43698376 - AluSg SINE Alu -9 301 1 189 0 0 0 chr9 74165080 74165101 -43697526 + (TTAA)n Simple_repeat Simple_repeat 2 22 0 1872 107 42 0 chr9 74165101 74165363 -43697264 - AluSx SINE Alu -30 282 10 1272 124 0 42 chr9 74165479 74165696 -43696931 - AluSx SINE Alu -104 208 1 1539 148 20 20 chr9 74165697 74165995 -43696632 - AluJb SINE Alu -14 298 1 1419 222 3 16 chr9 74165995 74166301 -43696326 - L1ME1 LINE L1 -341 5825 5524 2034 90 13 20 chr9 74167425 74167724 -43694903 + AluSx SINE Alu 1 297 -15 268 243 142 13 chr9 74167830 74167921 -43694706 - MIR SINE MIR -62 146 58 250 231 62 0 chr9 74168125 74168190 -43694437 + L2 LINE L2 3151 3219 -94 1600 163 3 37 chr9 74169545 74169845 -43692782 - AluJo SINE Alu -22 290 1 247 298 48 12 chr9 74169895 74169979 -43692648 - MLT1K LTR MaLR -23 565 479 252 198 277 10 chr9 74170049 74170150 -43692477 - MIR SINE MIR -72 190 63 260 218 18 0 chr9 74170421 74170476 -43692151 - Charlie8 DNA MER1_type -2235 182 127 185 246 82 82 chr9 74171515 74171625 -43691002 - MIR SINE MIR -34 228 119 306 252 78 39 chr9 74171793 74171896 -43690731 - MLT1L LTR MaLR -89 526 420 575 262 158 15 chr9 74172198 74172400 -43690227 + MIR SINE MIR 31 261 -1 292 353 30 15 chr9 74173241 74173374 -43689253 + L2 LINE L2 3133 3267 -5 4361 130 78 21 chr9 74173420 74174225 -43688402 - L1MA8 LINE L1 -10 6281 5431 1735 209 89 132 chr9 74174381 74175453 -43687174 - HAL1 LINE L1 0 2507 1482 2525 101 43 3 chr9 74175455 74175800 -43686827 + THE1B LTR MaLR 1 359 -5 1946 91 0 0 chr9 74175800 74176065 -43686562 + AluY SINE Alu 41 305 -6 2385 160 18 3 chr9 74176199 74176580 -43686047 - LTR26E LTR ERV1 -7 615 229 604 239 114 73 chr9 74176630 74176857 -43685770 - HAL1 LINE L1 -1465 1042 793 1688 171 0 16 chr9 74176857 74177173 -43685454 + AluJo SINE Alu 1 311 -1 604 239 114 73 chr9 74177173 74177314 -43685313 - HAL1 LINE L1 -1714 793 659 2026 94 21 0 chr9 74177448 74177736 -43684891 + AluSc SINE Alu 1 294 -15 268 243 142 13 chr9 74177842 74177933 -43684694 - MIR SINE MIR -62 146 58 222 37 0 0 chr9 74178632 74178659 -43683968 + (T)n Simple_repeat Simple_repeat 1 27 0 319 148 25 25 chr9 74179167 74179248 -43683379 - L1MD2 LINE L1 -13 6346 6266 1130 229 199 21 chr9 74179291 74179759 -43682868 - L1MC4 LINE L1 -241 7801 7251 532 249 70 74 chr9 74180291 74180520 -43682107 - LTR16C LTR ERVL -174 317 90 348 301 81 23 chr9 74181245 74181418 -43681209 - L1MEd LINE L1 -5365 754 572 1946 162 3 29 chr9 74182435 74182781 -43679846 - MER1B DNA MER1_type 0 337 1 207 279 48 58 chr9 74182919 74183023 -43679604 + MIR SINE MIR 128 230 -32 1703 179 0 7 chr9 74183071 74183378 -43679249 + AluJb SINE Alu 1 305 -7 217 297 33 55 chr9 74183637 74183728 -43678899 - MIR SINE MIR -64 198 110 2286 89 4 0 chr9 74184106 74184387 -43678240 - AluSx SINE Alu -22 290 9 1171 299 121 34 chr9 74185198 74186363 -43676264 + HAL1 LINE L1 48 1313 -1194 841 208 15 25 chr9 74186382 74186579 -43676048 - MER3 DNA MER1_type 0 209 15 895 307 9 12 chr9 74186642 74186987 -43675640 + HAL1 LINE L1 1410 1753 -754 1096 213 56 30 chr9 74187016 74187501 -43675126 - MLT1F1 LTR MaLR -10 557 1 1506 277 86 9 chr9 74187517 74188073 -43674554 + L1M4 LINE L1 3552 4150 -1996 1645 150 39 18 chr9 74188839 74189119 -43673508 - AluJb SINE Alu -26 286 1 267 232 146 0 chr9 74189371 74189453 -43673174 - MIR SINE MIR -92 170 77 186 247 0 0 chr9 74190254 74190331 -43672296 + (TG)n Simple_repeat Simple_repeat 1 77 0 1796 181 10 0 chr9 74191079 74191388 -43671239 + AluJo SINE Alu 1 312 0 974 288 37 18 chr9 74191761 74192088 -43670539 - MLT1I LTR MaLR 0 409 77 811 319 92 55 chr9 74193260 74193488 -43669139 + L2 LINE L2 2203 2421 -851 2327 133 68 36 chr9 74193488 74193902 -43668725 - MSTC LTR MaLR -1 427 1 811 319 92 55 chr9 74193902 74194024 -43668603 + L2 LINE L2 2421 2537 -735 2179 119 7 0 chr9 74194024 74194318 -43668309 - AluSq SINE Alu -17 296 1 811 319 92 55 chr9 74194318 74194793 -43667834 + L2 LINE L2 2537 3061 -211 2390 101 0 0 chr9 74196511 74196808 -43665819 - AluSx SINE Alu -15 297 1 614 199 15 157 chr9 74198194 74198456 -43664171 + L2 LINE L2 3089 3313 0 1818 167 3 10 chr9 74199153 74199452 -43663175 - AluJb SINE Alu -15 297 1 811 321 185 11 chr9 74199453 74200210 -43662417 + L2 LINE L2 218 1106 -2208 425 222 144 1 chr9 74200212 74200356 -43662271 + MLT1H1 LTR MaLR 1 161 -388 939 130 0 0 chr9 74200361 74200484 -43662143 + FLAM_C SINE Alu 1 123 -20 260 45 68 0 chr9 74200487 74200531 -43662096 + A-rich Low_complexity Low_complexity 2 48 0 1399 211 52 33 chr9 74200570 74200935 -43661692 + MLT1H1 LTR MaLR 170 541 -14 246 363 173 12 chr9 74200946 74201194 -43661433 + L2 LINE L2 1097 1384 -1930 * 671 271 110 42 chr9 74201181 74201465 -43661162 - L2 LINE L2 -993 2321 2013 2348 90 10 0 chr9 74201465 74201764 -43660863 + AluSg SINE Alu 1 302 -8 671 271 110 42 chr9 74201764 74201789 -43660838 - L2 LINE L2 -1301 2013 1991 221 330 131 17 chr9 74201794 74201970 -43660657 - L2 LINE L2 -1724 1590 1395 1090 319 76 16 chr9 74201970 74202418 -43660209 + L2 LINE L2 2313 2787 -527 1264 270 51 18 chr9 74202676 74203068 -43659559 - L1MDa LINE L1 -5723 817 413 1945 176 59 38 chr9 74203292 74203713 -43658914 + MSTB1 LTR MaLR 1 430 -2 657 228 99 56 chr9 74204894 74205127 -43657500 - MIR SINE MIR 0 262 20 237 108 0 0 chr9 74205498 74205535 -43657092 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 593 272 67 22 chr9 74205714 74206022 -43656605 - L2 LINE L2 -243 3029 2707 1722 234 97 44 chr9 74206276 74206781 -43655846 + MLT1H1 LTR MaLR 24 555 0 2010 144 0 3 chr9 74207028 74207359 -43655268 - AluSx SINE Alu 0 330 1 1691 178 72 66 chr9 74210442 74210897 -43651730 - MER31B LTR ERV1 -8 458 1 306 0 0 0 chr9 74211147 74211181 -43651446 + (TC)n Simple_repeat Simple_repeat 2 35 0 1447 182 121 8 chr9 74211210 74211474 -43651153 + AluSx SINE Alu 1 294 -18 257 151 19 0 chr9 74211853 74211906 -43650721 + (TG)n Simple_repeat Simple_repeat 2 55 0 410 218 98 0 chr9 74211918 74212051 -43650576 - LTR37A LTR ERV1 -13 413 268 250 253 57 60 chr9 74212271 74212379 -43650248 + MER5A DNA MER1_type 61 185 -4 198 270 27 27 chr9 74212552 74212626 -43650001 - L2 LINE L2 -2913 401 328 2485 156 107 18 chr9 74212939 74213451 -43649176 + MER89 LTR ERV1 2 559 0 508 306 56 20 chr9 74213640 74213836 -43648791 + MIR3 SINE MIR 3 205 -3 2326 47 54 4 chr9 74213903 74214182 -43648445 - AluY SINE Alu -18 293 1 263 287 102 48 chr9 74214525 74214692 -43647935 - L2 LINE L2 -213 3059 2884 2592 208 29 4 chr9 74214981 74215530 -43647097 - L1MB3 LINE L1 -2 6181 5619 2435 225 34 13 chr9 74215531 74215660 -43646967 - L1MD2 LINE L1 -300 6059 5934 1226 210 41 45 chr9 74215660 74215951 -43646676 + AluJo SINE Alu 2 291 -11 2435 225 34 13 chr9 74215951 74215963 -43646664 - L1MD2 LINE L1 -425 5934 5924 2161 124 10 0 chr9 74215963 74216262 -43646365 + AluSx SINE Alu 1 302 -10 2435 225 34 13 chr9 74216262 74216738 -43645889 - L1MD2 LINE L1 -435 5924 5428 291 294 26 40 chr9 74217500 74217643 -43644984 + MER5A DNA MER1_type 1 152 -37 1093 199 77 27 chr9 74217647 74217944 -43644683 + MLT1B LTR MaLR 1 312 -78 719 193 100 7 chr9 74217946 74218096 -43644531 + MLT1A2 LTR MaLR 200 363 -11 211 271 82 49 chr9 74218156 74218278 -43644349 - MIR3 SINE MIR -52 156 31 379 258 21 0 chr9 74218284 74218381 -43644246 + MER117 DNA MER1_type 8 106 -91 540 282 115 0 chr9 74218520 74218676 -43643951 + MER5A DNA MER1_type 10 183 -6 1793 162 3 3 chr9 74218682 74218978 -43643649 + AluJb SINE Alu 5 300 -12 245 277 30 0 chr9 74221751 74221852 -43640775 - L1M4 LINE L1 -3129 3017 2914 354 150 0 0 chr9 74221882 74221942 -43640685 + MER46B DNA MER2_type 2 61 -300 990 139 0 0 chr9 74221958 74222095 -43640532 + FRAM SINE Alu 21 157 -19 1284 141 180 0 chr9 74222102 74222358 -43640269 + MER46B DNA MER2_type 59 235 -1 233 303 8 8 chr9 74222473 74222595 -43640032 - L1MB3 LINE L1 -2331 5477 5356 395 279 61 12 chr9 74222633 74222798 -43639829 - L1MB3 LINE L1 -852 5294 5122 2296 109 3 3 chr9 74222819 74223123 -43639504 - AluSg SINE Alu -6 304 1 1027 215 53 0 chr9 74223250 74223459 -43639168 + MER58A DNA MER1_type 5 224 0 377 194 86 11 chr9 74223554 74223647 -43638980 + MIR SINE MIR 124 223 -39 289 266 9 18 chr9 74223836 74223945 -43638682 - L1ME4a LINE L1 -30 6091 5984 25 0 0 0 chr9 74224457 74224482 -43638145 + GC_rich Low_complexity Low_complexity 1 25 0 230 0 33 0 chr9 74224901 74224931 -43637696 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 1791 129 66 0 chr9 74224934 74225205 -43637422 - AluJo SINE Alu -23 289 1 1569 96 55 0 chr9 74227639 74227857 -43634770 - MER30 DNA MER1_type 0 230 1 464 155 48 0 chr9 74229276 74229360 -43633267 - MER44D DNA MER2_type 0 609 522 1449 122 11 34 chr9 74229631 74229893 -43632734 - MER44D DNA MER2_type -83 526 1 810 168 144 59 chr9 74229908 74230110 -43632517 - MER20 DNA MER1_type 0 219 1 852 265 15 8 chr9 74230399 74230667 -43631960 + L1MA4 LINE L1 6031 6300 0 1917 129 14 0 chr9 74230735 74231037 -43631590 + AluSg SINE Alu 1 306 0 436 329 89 11 chr9 74231255 74231602 -43631025 - L1ME LINE L1 -342 5779 5406 2025 90 86 4 chr9 74231821 74232100 -43630527 + AluSc SINE Alu 2 303 -6 186 352 11 22 chr9 74232630 74232721 -43629906 - MIR SINE MIR -166 96 7 2256 102 0 0 chr9 74232847 74233140 -43629487 - AluSg SINE Alu -17 293 1 2426 57 7 10 chr9 74233280 74233581 -43629046 - AluY SINE Alu -11 300 1 2087 122 0 3 chr9 74234238 74234596 -43628031 + AluSc SINE Alu 1 309 0 2528 41 0 10 chr9 74234596 74234890 -43627737 - AluY SINE Alu -20 291 1 1621 160 19 42 chr9 74234932 74235239 -43627388 + AluJo SINE Alu 1 300 -12 243 193 0 43 chr9 74235256 74235336 -43627291 + L2 LINE L2 3115 3191 -122 188 374 52 52 chr9 74235358 74235513 -43627114 + L3b LINE CR1 1416 1570 -13 886 120 8 0 chr9 74236314 74236439 -43626188 - FLAM_C SINE Alu -17 126 1 361 203 17 23 chr9 74236883 74236971 -43625656 - MIR3 SINE MIR -43 165 76 300 189 0 54 chr9 74237492 74237543 -43625084 + MER116 DNA Mariner 11 59 -21 1765 120 38 4 chr9 74237543 74237843 -43624784 - AluSg SINE Alu 0 314 6 300 189 0 54 chr9 74237843 74237864 -43624763 + MER116 DNA Mariner 59 80 0 198 302 58 35 chr9 74238889 74238946 -43623681 - L2 LINE L2 -5 3308 3247 802 198 44 6 chr9 74238946 74239128 -43623499 + MER5A DNA MER1_type 1 189 0 198 302 58 35 chr9 74239128 74239156 -43623471 - L2 LINE L2 -66 3247 3221 252 327 139 18 chr9 74239863 74240028 -43622599 - MIR SINE MIR -53 209 25 1459 175 25 7 chr9 74240292 74240578 -43622049 + L1MC1 LINE L1 6043 6333 0 200 136 0 45 chr9 74241247 74241291 -43621336 + (TTTC)n Simple_repeat Simple_repeat 3 44 0 643 247 29 0 chr9 74242005 74242179 -43620448 + MER5A DNA MER1_type 1 179 -10 866 166 0 55 chr9 74242651 74242832 -43619795 - FRAM SINE Alu -13 163 1 408 296 42 21 chr9 74242989 74243131 -43619496 - L2 LINE L2 -25 3288 3144 896 177 111 0 chr9 74243345 74243526 -43619101 + MER20 DNA MER1_type 2 202 -17 2015 174 41 0 chr9 74244231 74244575 -43618052 - MLT1A1 LTR MaLR -7 358 1 181 245 78 69 chr9 74244974 74245076 -43617551 + MIR SINE MIR 160 262 0 2101 118 3 3 chr9 74245141 74245445 -43617182 + AluSx SINE Alu 1 304 -8 28 0 0 0 chr9 74245601 74245629 -43616998 + AT_rich Low_complexity Low_complexity 1 28 0 270 81 0 0 chr9 74245897 74245934 -43616693 + (TG)n Simple_repeat Simple_repeat 2 38 0 384 299 103 45 chr9 74246330 74246621 -43616006 + MLT1J LTR MaLR 204 511 0 654 39 71 0 chr9 74247186 74247313 -43615314 + (TG)n Simple_repeat Simple_repeat 2 137 0 240 316 105 9 chr9 74247452 74247566 -43615061 - MER91A DNA MER1_type -4 192 68 191 281 31 62 chr9 74247856 74247920 -43614707 + L2 LINE L2 3208 3269 -3 267 133 0 0 chr9 74249172 74249217 -43613410 + (GGGA)n Simple_repeat Simple_repeat 4 48 0 535 216 7 7 chr9 74249258 74249406 -43613221 + GA-rich Low_complexity Low_complexity 3 150 0 339 178 44 0 chr9 74249520 74249610 -43613017 + GA-rich Low_complexity Low_complexity 3 96 0 189 171 0 0 chr9 74249617 74249652 -43612975 + A-rich Low_complexity Low_complexity 1 35 0 399 300 76 20 chr9 74249840 74250090 -43612537 - L2 LINE L2 -21 3292 3029 1367 196 65 15 chr9 74250388 74250725 -43611902 - MLT1A1 LTR MaLR -11 354 1 328 329 38 42 chr9 74250725 74250938 -43611689 - L3 LINE CR1 -137 1440 1229 212 368 0 0 chr9 74251031 74251107 -43611520 + MIR SINE MIR 158 233 -29 350 253 33 0 chr9 74251117 74251208 -43611419 - L3 LINE CR1 -324 1253 1160 362 69 17 0 chr9 74251402 74251460 -43611167 + (TC)n Simple_repeat Simple_repeat 1 59 0 850 261 37 26 chr9 74252058 74252326 -43610301 + Charlie8 DNA MER1_type 18 288 -2129 973 193 5 57 chr9 74252405 74252617 -43610010 + MER63A DNA MER1_type 9 209 -1 225 287 69 20 chr9 74252649 74252750 -43609877 + MIR SINE MIR 89 194 -68 1835 135 3 27 chr9 74254072 74254369 -43608258 + AluSg SINE Alu 1 290 -20 2148 113 0 0 chr9 74254405 74254698 -43607929 + AluSx SINE Alu 1 293 -19 261 307 96 60 chr9 74255072 74255238 -43607389 - MIR3 SINE MIR -15 193 22 329 282 0 0 chr9 74255314 74255399 -43607228 + (CA)n Simple_repeat Simple_repeat 1 85 0 228 135 0 0 chr9 74256776 74256813 -43605814 + (A)n Simple_repeat Simple_repeat 1 37 0 2216 90 3 0 chr9 74256878 74257177 -43605450 + AluSx SINE Alu 1 300 -12 1307 187 37 13 chr9 74258395 74258699 -43603928 - MER33 DNA MER1_type -22 302 1 235 319 190 0 chr9 74258850 74258966 -43603661 - MIR SINE MIR -67 195 58 213 333 154 43 chr9 74259197 74259542 -43603085 - L2 LINE L2 -34 3238 2856 867 180 0 0 chr9 74259924 74260074 -43602553 + AluJb SINE Alu 160 309 -3 429 273 0 38 chr9 74263246 74263378 -43599249 + MLT1K LTR MaLR 16 142 -446 247 191 0 0 chr9 74263457 74263499 -43599128 + MER91B DNA MER1_type 1 42 -148 315 298 6 81 chr9 74263741 74263795 -43598832 - MIR3 SINE MIR -10 198 142 2022 105 14 3 chr9 74263795 74264090 -43598537 - AluSx SINE Alu -14 298 1 315 298 6 81 chr9 74264090 74264196 -43598431 - MIR3 SINE MIR -66 142 50 1992 117 3 3 chr9 74265491 74265791 -43596836 + AluSx SINE Alu 1 300 -12 398 319 60 20 chr9 74266429 74266680 -43595947 + L1ME4a LINE L1 5665 5925 -196 307 299 112 15 chr9 74266695 74266829 -43595798 + L1ME4a LINE L1 5970 6116 -5 2252 105 0 0 chr9 74267148 74267454 -43595173 + AluSg SINE Alu 1 306 -4 850 217 11 5 chr9 74268040 74268224 -43594403 + MER5A DNA MER1_type 1 185 -4 347 320 24 24 chr9 74268342 74268467 -43594160 - MIR SINE MIR -56 206 82 23 33 0 0 chr9 74268948 74268978 -43593649 + AT_rich Low_complexity Low_complexity 1 30 0 306 240 183 2 chr9 74269023 74269119 -43593508 - MER91B DNA MER1_type -41 103 1 234 281 0 0 chr9 74270038 74270102 -43592525 - MIR SINE MIR -1 261 198 279 252 237 50 chr9 74270103 74270242 -43592385 - MER46C DNA MER2_type 0 338 174 2250 103 0 0 chr9 74270263 74270575 -43592052 - AluSx SINE Alu 0 312 1 301 83 42 0 chr9 74271053 74271101 -43591526 - L1MB2 LINE L1 0 6171 6122 608 144 39 10 chr9 74271101 74271205 -43591422 - U6 snRNA snRNA 0 107 1 2055 107 17 3 chr9 74271237 74271369 -43591258 + AluSx SINE Alu 1 130 -182 251 70 0 23 chr9 74271369 74271412 -43591215 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 2055 107 17 3 chr9 74271412 74271568 -43591059 + AluSx SINE Alu 130 293 -19 2333 125 92 2 chr9 74271721 74272114 -43590513 + MSTA LTR MaLR 1 428 0 521 274 105 95 chr9 74272267 74272647 -43589980 - L1MC4a LINE L1 -1760 6048 5665 1137 132 6 0 chr9 74272683 74272850 -43589777 - AluJo SINE Alu -144 168 1 246 287 131 14 chr9 74272864 74273066 -43589561 - L1P LINE L1 -744 5421 5201 418 333 76 64 chr9 74273105 74273727 -43588900 - L1MC4a LINE L1 -1095 5051 4423 721 281 132 32 chr9 74273727 74274068 -43588559 - MLT1J1 LTR MaLR 0 446 72 187 260 10 125 chr9 74274279 74274327 -43588300 + MIR SINE MIR 171 202 -60 2233 98 0 0 chr9 74274327 74274623 -43588004 + AluSg SINE Alu 1 296 -14 187 260 10 125 chr9 74274623 74274678 -43587949 + MIR SINE MIR 202 262 0 276 349 55 22 chr9 74274778 74275090 -43587537 - L1MC4a LINE L1 -1908 4238 3917 258 176 176 0 chr9 74275182 74275233 -43587394 - MER81 DNA DNA -6 108 49 1430 131 0 9 chr9 74275233 74275447 -43587180 + LTR8A LTR ERV1 1 212 -515 1416 132 0 22 chr9 74275448 74275675 -43586952 + AluSc SINE Alu 83 304 -5 398 245 0 11 chr9 74275906 74276000 -43586627 - MLT1I LTR MaLR 0 409 317 639 248 76 55 chr9 74276123 74276145 -43586482 + L1ME1 LINE L1 5818 5838 -328 1741 88 0 4 chr9 74276145 74276383 -43586244 - AluSq SINE Alu -76 237 1 639 248 76 55 chr9 74276383 74276701 -43585926 + L1ME1 LINE L1 5838 6162 -4 203 244 64 92 chr9 74276723 74276854 -43585773 - MER5B DNA MER1_type -51 138 1 251 236 0 0 chr9 74277493 74277548 -43585079 + MIR SINE MIR 98 152 -110 1219 260 183 4 chr9 74278582 74279086 -43583541 - L2 LINE L2 -1245 2069 1476 378 256 153 0 chr9 74279102 74279239 -43583388 + L1ME4a LINE L1 5669 5826 -295 5002 201 35 52 chr9 74279243 74280274 -43582353 + L1ME4a LINE L1 4017 5020 -1126 1605 173 0 17 chr9 74280274 74280574 -43582053 + AluJo SINE Alu 18 312 0 5002 201 35 52 chr9 74280574 74280952 -43581675 + L1ME4a LINE L1 5020 5403 -743 1296 277 107 12 chr9 74280983 74281384 -43581243 + MLT1G LTR MaLR 152 590 0 2427 81 0 0 chr9 74281640 74281950 -43580677 + AluSg SINE Alu 1 310 0 1587 193 48 3 chr9 74282302 74282655 -43579972 + L1ME2 LINE L1 5605 5973 -191 485 168 27 74 chr9 74282765 74282914 -43579713 + L1MC5 LINE L1 7779 7920 -41 750 228 106 125 chr9 74283345 74283809 -43578818 + MLT1J LTR MaLR 8 462 -49 1034 156 0 97 chr9 74284237 74284475 -43578152 - MER20 DNA MER1_type -4 215 1 368 271 64 36 chr9 74284479 74284561 -43578066 + L1ME4a LINE L1 5537 5626 -495 1803 136 0 57 chr9 74284561 74284878 -43577749 + AluSq SINE Alu 1 299 -14 368 271 64 36 chr9 74284878 74284935 -43577692 + L1ME4a LINE L1 5626 5680 -441 4570 153 8 38 chr9 74284935 74285584 -43577043 + L1MB7 LINE L1 5289 5956 -228 1966 120 0 7 chr9 74285584 74285868 -43576759 + AluSx SINE Alu 1 282 -30 529 129 0 0 chr9 74285798 74285868 -43576759 + AluY SINE Alu 212 307 0 235 0 0 0 chr9 74285868 74285894 -43576733 + (TAAA)n Simple_repeat Simple_repeat 3 112 0 4570 153 8 38 chr9 74285894 74286138 -43576489 + L1MB7 LINE L1 5954 6156 -28 1749 158 27 7 chr9 74286216 74286517 -43576110 - AluJo SINE Alu -8 304 1 280 244 100 25 chr9 74286529 74286689 -43575938 + L1ME4a LINE L1 5726 5897 -224 324 165 39 58 chr9 74286739 74286842 -43575785 + L1ME4a LINE L1 5975 6075 -46 2763 23 3 0 chr9 74286884 74287194 -43575433 - AluYa5 SINE Alu 0 311 1 281 289 71 61 chr9 74287249 74287446 -43575181 - MIR3 SINE MIR -7 201 3 550 255 163 15 chr9 74288302 74288498 -43574129 + MIR SINE MIR 37 261 -1 678 264 89 32 chr9 74288946 74289280 -43573347 + MLT1G3 LTR MaLR 14 394 -196 2682 121 137 94 chr9 74289553 74290190 -43572437 + MER4A LTR ERV1 1 664 0 1982 147 3 17 chr9 74290800 74291099 -43571528 - AluJb SINE Alu -17 295 1 2155 118 0 0 chr9 74291224 74291504 -43571123 + AluSx SINE Alu 1 280 -32 369 0 0 0 chr9 74291504 74291545 -43571082 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 358 349 40 0 chr9 74292331 74292483 -43570144 + MIR SINE MIR 51 208 -54 1645 140 4 29 chr9 74292837 74293109 -43569518 + AluJo SINE Alu 1 265 -47 28 61 0 0 chr9 74293158 74293207 -43569420 + AT_rich Low_complexity Low_complexity 1 49 0 2150 114 7 0 chr9 74293369 74293659 -43568968 + AluSx SINE Alu 1 292 -20 2581 39 0 0 chr9 74294935 74295240 -43567387 + L1PA8 LINE L1 5866 6170 -2 959 180 22 0 chr9 74296179 74296362 -43566265 + MER53 DNA DNA 3 189 0 419 163 11 0 chr9 74296631 74296647 -43565980 + GA-rich Low_complexity Low_complexity 4 18 -78 1820 173 7 10 chr9 74296647 74296954 -43565673 + AluJb SINE Alu 6 311 -1 419 163 11 0 chr9 74296954 74297029 -43565598 + GA-rich Low_complexity Low_complexity 18 96 0 456 294 38 23 chr9 74297352 74297541 -43565086 - MIR SINE MIR -57 151 12 927 291 60 33 chr9 74297834 74298198 -43564429 + MLT1I LTR MaLR 22 395 -14 1471 212 13 3 chr9 74299494 74299801 -43562826 + L1MA9 LINE L1 6001 6310 -2 259 204 175 0 chr9 74300071 74300174 -43562453 + MER91A DNA MER1_type 40 160 -36 425 273 0 38 chr9 74303345 74303477 -43559150 + MLT1K LTR MaLR 16 142 -446 230 191 0 0 chr9 74303556 74303598 -43559029 + MER91B DNA MER1_type 1 42 -98 2146 105 14 3 chr9 74303893 74304188 -43558439 - AluSx SINE Alu -14 298 1 290 344 0 0 chr9 74304208 74304298 -43558329 - MIR SINE MIR -72 136 47 2393 82 0 3 chr9 74305590 74305893 -43556734 + AluSx SINE Alu 1 302 -10 401 319 60 20 chr9 74306531 74306782 -43555845 + L1ME4a LINE L1 5665 5925 -196 2377 105 0 0 chr9 74307254 74307560 -43555067 + AluSg SINE Alu 1 306 -4 838 217 11 5 chr9 74308146 74308330 -43554297 + MER5A DNA MER1_type 1 185 -4 279 319 33 0 chr9 74308482 74308573 -43554054 - MIR SINE MIR -87 175 82 23 33 0 0 chr9 74309054 74309084 -43553543 + AT_rich Low_complexity Low_complexity 1 30 0 271 233 198 0 chr9 74309139 74309225 -43553402 - MER91B DNA MER1_type -87 103 1 25 0 0 0 chr9 74309405 74309430 -43553197 + AT_rich Low_complexity Low_complexity 1 25 0 209 281 0 0 chr9 74310144 74310208 -43552419 - MIR SINE MIR -1 261 198 273 245 237 50 chr9 74310209 74310348 -43552279 - MER46C DNA MER2_type 0 338 174 2378 103 0 0 chr9 74310369 74310681 -43551946 - AluSx SINE Alu 0 312 1 306 83 42 0 chr9 74311159 74311207 -43551420 - L1MB2 LINE L1 0 6171 6122 614 144 39 10 chr9 74311207 74311311 -43551316 - U6 snRNA snRNA 0 107 1 2217 108 17 0 chr9 74311343 74311474 -43551153 + AluSx SINE Alu 1 128 -184 251 70 0 23 chr9 74311474 74311517 -43551110 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 2217 108 17 0 chr9 74311517 74311673 -43550954 + AluSx SINE Alu 128 293 -19 2409 114 92 2 chr9 74311826 74312219 -43550408 + MSTA LTR MaLR 1 428 0 336 274 105 95 chr9 74312372 74312752 -43549875 - L1MC4a LINE L1 -1760 6048 5665 1208 132 6 0 chr9 74312788 74312955 -43549672 - AluJo SINE Alu -144 168 1 249 287 131 14 chr9 74312969 74313171 -43549456 - L1P LINE L1 -744 5421 5201 707 281 132 32 chr9 74313832 74314173 -43548454 - MLT1J1 LTR MaLR 0 446 72 2361 98 0 0 chr9 74314432 74314728 -43547899 + AluSg SINE Alu 1 296 -14 279 333 64 32 chr9 74314883 74315195 -43547432 - L1M4 LINE L1 -1908 4238 3917 258 176 176 0 chr9 74315287 74315338 -43547289 - MER81 DNA DNA -6 108 49 1439 131 0 9 chr9 74315338 74315552 -43547075 + LTR8A LTR ERV1 1 212 -515 1504 132 0 22 chr9 74315553 74315780 -43546847 + AluSc SINE Alu 83 304 -5 402 245 0 11 chr9 74316011 74316105 -43546522 - MLT1I LTR MaLR 0 409 317 1766 106 4 0 chr9 74316266 74316502 -43546125 - AluSx SINE Alu -75 237 1 2241 102 0 16 chr9 74317237 74317550 -43545077 - AluSg1 SINE Alu -1 308 1 321 172 90 48 chr9 74317640 74317667 -43544960 - L1M4 LINE L1 -3735 2411 2387 491 127 13 0 chr9 74317667 74317746 -43544881 - MADE1 DNA Mariner 0 80 1 321 172 90 48 chr9 74317746 74317863 -43544764 - L1M4 LINE L1 -3759 2387 2261 341 280 26 13 chr9 74318034 74318193 -43544434 - MLT1I LTR MaLR -9 427 286 425 247 0 0 chr9 74318193 74318270 -43544357 + MER96 DNA MER1_type? 1 77 -98 2291 76 3 35 chr9 74318446 74318763 -43543864 + AluY SINE Alu 5 311 0 1054 143 45 146 chr9 74318779 74319136 -43543491 + L1MA8 LINE L1 5966 6286 -5 1013 115 0 0 chr9 74319548 74319678 -43542949 - AluSq/x SINE Alu -182 130 1 234 237 10 82 chr9 74319953 74320050 -43542577 + LTR37B LTR ERV1 1 90 -378 383 274 48 35 chr9 74320196 74320426 -43542201 + LTR37B LTR ERV1 211 443 -25 317 226 191 15 chr9 74320664 74320863 -43541764 + L1ME3 LINE L1 2336 2569 -3577 279 277 12 0 chr9 74320979 74321062 -43541565 + L1ME3 LINE L1 3197 3280 -2866 549 248 136 88 chr9 74321134 74321292 -43541335 + HAL1 LINE L1 8 157 -2350 1822 156 18 0 chr9 74321292 74321575 -43541052 - AluJo SINE Alu -24 288 1 549 248 136 88 chr9 74321575 74321791 -43540836 + HAL1 LINE L1 157 400 -2107 861 269 90 58 chr9 74321857 74322163 -43540464 + HAL1 LINE L1 604 899 -1608 2403 94 0 3 chr9 74322163 74322462 -43540165 - AluSx SINE Alu -14 298 1 861 269 90 58 chr9 74322462 74322779 -43539848 + HAL1 LINE L1 899 1247 -1260 2311 105 7 0 chr9 74322924 74323228 -43539399 - AluSx SINE Alu -6 306 1 284 257 0 14 chr9 74323248 74323318 -43539309 + LTR67 LTR ERVL 436 504 -53 558 276 45 51 chr9 74323331 74323664 -43538963 + L1ME3 LINE L1 3337 3667 -2479 2246 114 0 0 chr9 74323671 74323969 -43538658 + AluSx SINE Alu 1 298 -14 1741 183 56 0 chr9 74323997 74324320 -43538307 - MER7A DNA MER2_type -4 342 4 361 248 118 121 chr9 74324348 74324626 -43538001 + L1ME3 LINE L1 5616 5894 -268 2363 111 0 0 chr9 74324626 74324933 -43537694 + AluSx SINE Alu 1 307 -5 361 248 118 121 chr9 74324933 74324985 -43537642 + L1ME3 LINE L1 5894 5945 -217 240 35 0 0 chr9 74325245 74325274 -43537353 + (CA)n Simple_repeat Simple_repeat 2 30 0 282 73 0 0 chr9 74325274 74325315 -43537312 + (GA)n Simple_repeat Simple_repeat 1 41 0 529 321 69 16 chr9 74325996 74326314 -43536313 + L1MC4a LINE L1 5574 5908 -1900 21 82 0 0 chr9 74326349 74326398 -43536229 + AT_rich Low_complexity Low_complexity 1 49 0 493 227 47 31 chr9 74326399 74326527 -43536100 + MLT1J2 LTR MaLR 3 132 -318 180 0 0 0 chr9 74326736 74326756 -43535871 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1915 134 0 28 chr9 74327090 74327374 -43535253 + AluSq SINE Alu 1 276 -37 441 0 0 0 chr9 74327377 74327426 -43535201 + (TC)n Simple_repeat Simple_repeat 2 50 0 * 463 43 29 0 chr9 74327425 74327495 -43535132 + (TA)n Simple_repeat Simple_repeat 1 72 0 4382 154 43 5 chr9 74327500 74328259 -43534368 + L1MD1 LINE L1 5398 6185 -57 641 324 32 45 chr9 74328258 74328648 -43533979 + L1MA9 LINE L1 98 1276 -5822 * 3342 245 64 101 chr9 74328682 74329178 -43533449 + L1MA9 LINE L1 1618 2131 -5036 2119 108 0 68 chr9 74329178 74329502 -43533125 + AluSx SINE Alu 1 302 -10 3342 245 64 101 chr9 74329502 74330457 -43532170 + L1MA9 LINE L1 2131 2841 -4326 1034 183 0 0 chr9 74330457 74330621 -43532006 + AluJb SINE Alu 139 302 -10 3342 245 64 101 chr9 74330621 74331031 -43531596 + L1MA9 LINE L1 2841 3265 -3902 734 108 0 0 chr9 74331052 74331154 -43531473 + AluJb SINE Alu 208 309 -3 5417 156 28 42 chr9 74331161 74331941 -43530686 + L1MA9 LINE L1 5390 6179 -1154 2396 93 0 0 chr9 74331941 74332241 -43530386 + AluY SINE Alu 1 300 -11 5417 156 28 42 chr9 74332241 74332861 -43529766 + L1MA9 LINE L1 6179 6760 -573 270 0 0 0 chr9 74332861 74332891 -43529736 + (CA)n Simple_repeat Simple_repeat 1 30 0 5417 156 28 42 chr9 74332891 74333455 -43529172 + L1MA9 LINE L1 6760 7330 -3 4323 140 70 58 chr9 74334147 74334796 -43527831 - MER4D LTR ERV1 0 872 209 2402 72 0 0 chr9 74334796 74335088 -43527539 - AluY SINE Alu -19 292 1 4323 140 70 58 chr9 74335088 74335300 -43527327 - MER4D LTR ERV1 -663 209 1 295 164 75 45 chr9 74335521 74335588 -43527039 - LTR33 LTR ERVL -9 512 444 4059 87 28 0 chr9 74335639 74336178 -43526449 + MER41A LTR ERV1 1 554 0 302 145 342 0 chr9 74336178 74336254 -43526373 + MER41A-int LTR ERV1 1 102 -5844 3892 146 9 46 chr9 74336263 74336920 -43525707 + MER41A-int LTR ERV1 1 633 -5313 * 12855 101 45 31 chr9 74336895 74338012 -43524615 + MER41A-int LTR ERV1 2606 3705 -2241 2238 113 3 0 chr9 74338012 74338323 -43524304 - AluSq SINE Alu -1 312 1 12855 101 45 31 chr9 74338323 74338965 -43523662 + MER41A-int LTR ERV1 3705 4336 -1610 1873 117 38 17 chr9 74338965 74339256 -43523371 + AluSg SINE Alu 6 302 -8 12855 101 45 31 chr9 74339256 74339857 -43522770 + MER41A-int LTR ERV1 4336 4927 -1019 2167 111 0 0 chr9 74339857 74340155 -43522472 - AluSx SINE Alu -14 298 1 12855 101 45 31 chr9 74340155 74340905 -43521722 + MER41A-int LTR ERV1 4927 5944 -2 3945 92 9 32 chr9 74340905 74341078 -43521549 + MER41A LTR ERV1 1 176 -378 2140 121 0 0 chr9 74341078 74341375 -43521252 + AluSx SINE Alu 1 297 -15 3945 92 9 32 chr9 74341375 74341423 -43521204 + MER41A LTR ERV1 176 224 -330 2049 136 0 3 chr9 74341423 74341733 -43520894 + AluSx SINE Alu 1 309 -3 3945 92 9 32 chr9 74341733 74342077 -43520550 + MER41A LTR ERV1 224 554 0 405 179 147 0 chr9 74342207 74342302 -43520325 - LTR33 LTR ERVL -354 167 59 2137 82 0 0 chr9 74342445 74342754 -43519873 + AluY SINE Alu 1 309 0 2034 209 73 27 chr9 74342773 74343322 -43519305 + L1MB7 LINE L1 5611 6184 0 1506 162 3 72 chr9 74343514 74343670 -43518957 + AluJb SINE Alu 1 123 -189 2215 78 3 7 chr9 74343670 74343976 -43518651 + AluY SINE Alu 1 305 -6 1506 162 3 72 chr9 74343976 74344153 -43518474 + AluJb SINE Alu 123 311 -1 345 47 0 0 chr9 74344208 74344251 -43518376 + (TG)n Simple_repeat Simple_repeat 1 43 0 693 164 17 0 chr9 74344251 74344367 -43518260 + L1MC1 LINE L1 6210 6327 -6 7540 199 97 34 chr9 74345304 74345570 -43517057 + L1MDa LINE L1 25 273 -6267 2091 84 3 58 chr9 74345570 74345880 -43516747 + AluSq SINE Alu 2 294 -19 7540 199 97 34 chr9 74345880 74346692 -43515935 + L1MDa LINE L1 273 1032 -5508 2181 110 0 0 chr9 74346692 74346992 -43515635 + AluSx SINE Alu 1 300 -12 7540 199 97 34 chr9 74346992 74347373 -43515254 + L1MDa LINE L1 1032 1388 -5152 1780 144 65 0 chr9 74347373 74347665 -43514962 - AluSq SINE Alu -2 311 1 7540 199 97 34 chr9 74347665 74348170 -43514457 + L1MDa LINE L1 1388 2115 -4425 1786 206 16 22 chr9 74348170 74348538 -43514089 + MLT2D LTR ERVL 1 366 -48 270 208 9 28 chr9 74348538 74348644 -43513983 + CT-rich Low_complexity Low_complexity 1 104 0 291 71 0 0 chr9 74348655 74348697 -43513930 + (TG)n Simple_repeat Simple_repeat 1 42 0 344 86 0 5 chr9 74348697 74348745 -43513882 + MLT2C1 LTR ERVL 358 397 0 258 326 54 0 chr9 74348841 74348933 -43513694 - MIR SINE MIR -50 212 116 803 164 7 14 chr9 74349151 74349291 -43513336 + FLAM_C SINE Alu 2 140 -3 206 271 94 35 chr9 74349372 74349457 -43513170 - MIR SINE MIR -86 122 33 2253 93 3 0 chr9 74350020 74350322 -43512305 - AluSg SINE Alu -7 303 1 2315 96 0 0 chr9 74350339 74350652 -43511975 - AluSq SINE Alu 0 313 1 1353 228 46 54 chr9 74350828 74350984 -43511643 + MLT1A2 LTR MaLR 4 160 -214 1922 139 10 0 chr9 74350984 74351285 -43511342 + AluJb SINE Alu 1 304 -8 1353 228 46 54 chr9 74351285 74351501 -43511126 + MLT1A2 LTR MaLR 160 373 -1 409 250 94 43 chr9 74351554 74351777 -43510850 + L1ME4a LINE L1 5595 5836 -285 1424 133 95 56 chr9 74351777 74352062 -43510565 + AluJb SINE Alu 1 296 -16 409 250 94 43 chr9 74352062 74352114 -43510513 + L1ME4a LINE L1 5836 5884 -237 435 289 104 24 chr9 74352140 74352351 -43510276 - L1M4 LINE L1 -1570 4576 4349 2306 81 0 3 chr9 74352356 74352663 -43509964 - AluSg SINE Alu -4 306 1 2263 93 0 3 chr9 74353290 74353590 -43509037 + AluSx SINE Alu 3 301 -11 1691 165 14 14 chr9 74353774 74354071 -43508556 - AluJo SINE Alu -15 297 1 2117 110 0 7 chr9 74355776 74356076 -43506551 - AluSx SINE Alu -14 298 1 397 259 105 31 chr9 74356278 74356440 -43506187 + MIR3 SINE MIR 20 193 -15 1765 148 25 3 chr9 74356508 74356792 -43505835 + AluJb SINE Alu 1 290 -22 4494 157 49 26 chr9 74356796 74357501 -43505126 - L1MB2 LINE L1 0 6171 5441 753 144 48 0 chr9 74357501 74357626 -43505001 - FLAM_A SINE Alu -2 131 1 4494 157 49 26 chr9 74357626 74357801 -43504826 - L1MB2 LINE L1 -730 5441 5271 1462 178 33 26 chr9 74357827 74358130 -43504497 - AluJb SINE Alu -7 305 1 1707 134 7 46 chr9 74358259 74358566 -43504061 - AluSx SINE Alu -17 295 1 23 33 0 0 chr9 74358673 74358703 -43503924 + AT_rich Low_complexity Low_complexity 1 30 0 2347 71 0 0 chr9 74359156 74359451 -43503176 - AluY SINE Alu -16 295 1 378 188 135 0 chr9 74359594 74359690 -43502937 + LTR33 LTR ERVL 59 167 -354 3969 89 9 39 chr9 74359820 74360168 -43502459 - MER41A LTR ERV1 0 554 197 2018 137 0 3 chr9 74360168 74360474 -43502153 - AluSx SINE Alu -7 305 1 3969 89 9 39 chr9 74360474 74360522 -43502105 - MER41A LTR ERV1 -357 197 149 2140 121 0 0 chr9 74360522 74360819 -43501808 - AluSx SINE Alu -15 297 1 3969 89 9 39 chr9 74360819 74360992 -43501635 - MER41A LTR ERV1 -405 149 1 7463 103 21 12 chr9 74360992 74361743 -43500884 - MER41A-int LTR ERV1 -2 5944 5178 2159 111 0 0 chr9 74361743 74362040 -43500587 + AluSx SINE Alu 1 297 -15 7463 103 21 12 chr9 74362040 74362372 -43500255 - MER41A-int LTR ERV1 -768 5178 4851 262 241 115 35 chr9 74362579 74362666 -43499961 + MER5A DNA MER1_type 16 109 -80 2014 102 56 0 chr9 74362735 74363019 -43499608 - AluSx SINE Alu -12 300 1 1701 209 86 4 chr9 74363039 74363504 -43499123 + Charlie4a DNA MER1_type 2 504 -4 2398 64 0 0 chr9 74363505 74363803 -43498824 + AluY SINE Alu 1 298 -13 1691 168 0 20 chr9 74363812 74364110 -43498517 + AluJb SINE Alu 1 292 -20 1748 274 64 52 chr9 74364127 74364482 -43498145 + L1M4b LINE L1 20 369 -6490 3736 68 12 2 chr9 74364482 74364966 -43497661 - L1PA10 LINE L1 -5 6163 5675 1748 274 64 52 chr9 74364966 74364977 -43497650 + L1M4b LINE L1 369 378 -6481 1466 184 54 0 chr9 74364977 74365254 -43497373 - AluJb SINE Alu -20 292 1 1748 274 64 52 chr9 74365254 74365463 -43497164 + L1M4b LINE L1 378 603 -6256 1551 235 56 79 chr9 74365551 74366094 -43496533 + MER77 LTR ERV1 96 673 -7 3938 187 108 22 chr9 74366154 74367444 -43495183 + L1M4b LINE L1 703 2107 -4852 2271 85 3 0 chr9 74367444 74367739 -43494888 - AluY SINE Alu -15 296 1 3938 187 108 22 chr9 74367739 74367813 -43494814 + L1M4b LINE L1 2107 2173 -4786 2813 90 0 3 chr9 74367880 74368245 -43494382 + THE1B LTR MaLR 1 364 0 742 200 135 5 chr9 74368505 74368690 -43493937 + MER3 DNA MER1_type 1 209 0 220 232 36 18 chr9 74368964 74369020 -43493607 + L2 LINE L2 3257 3313 0 213 255 0 0 chr9 74370212 74370259 -43492368 + MIR SINE MIR 26 72 -190 568 226 24 30 chr9 74370260 74370424 -43492203 - L1MB7 LINE L1 -1 6183 6021 327 332 84 57 chr9 74370427 74370674 -43491953 - L1MB7 LINE L1 -769 5590 5332 2051 87 28 3 chr9 74370674 74370961 -43491666 - AluSg SINE Alu -16 294 1 327 332 84 57 chr9 74370961 74371011 -43491616 - L1MB7 LINE L1 -1027 5332 5285 261 224 56 154 chr9 74371306 74371520 -43491107 + Charlie8 DNA MER1_type 19 211 -2206 271 319 11 0 chr9 74371647 74371741 -43490886 + Charlie8 DNA MER1_type 379 473 -1944 1931 99 34 7 chr9 74371771 74372063 -43490564 + AluSg SINE Alu 1 300 -10 1577 177 3 3 chr9 74372063 74372345 -43490282 + L1MC1 LINE L1 5824 6105 -228 773 299 21 17 chr9 74373081 74373315 -43489312 - MIR SINE MIR 0 262 28 438 20 0 0 chr9 74373779 74373830 -43488797 + (CA)n Simple_repeat Simple_repeat 2 52 0 772 178 81 0 chr9 74373922 74374096 -43488531 + MER53 DNA DNA 2 189 0 279 0 0 0 chr9 74374176 74374207 -43488420 + (TG)n Simple_repeat Simple_repeat 2 32 0 1959 109 0 31 chr9 74374865 74374999 -43487628 + AluSg SINE Alu 1 138 -172 2108 112 3 3 chr9 74374999 74375295 -43487332 + AluSg SINE Alu 1 296 -14 1959 109 0 31 chr9 74375295 74375454 -43487173 + AluSg SINE Alu 138 285 -25 630 314 105 32 chr9 74376006 74376166 -43486461 - L2 LINE L2 0 3313 3166 2123 113 0 0 chr9 74376166 74376457 -43486170 + AluSx SINE Alu 6 296 -16 630 314 105 32 chr9 74376457 74376697 -43485930 - L2 LINE L2 -147 3166 2884 1193 194 116 12 chr9 74376697 74376955 -43485672 + AluSg SINE Alu 1 285 -15 985 113 0 0 chr9 74377055 74377188 -43485439 + AluSg/x SINE Alu 164 296 -16 180 235 39 0 chr9 74377462 74377513 -43485114 + L2 LINE L2 2126 2178 -1136 929 287 80 6 chr9 74377551 74377875 -43484752 - L1MC/D LINE L1 -2169 5622 5275 768 289 78 65 chr9 74377932 74378614 -43484013 - L1MC/D LINE L1 -5101 1018 328 1212 252 105 52 chr9 74378885 74379400 -43483227 - MLT1F LTR MaLR 0 542 1 765 221 36 44 chr9 74379401 74379650 -43482977 + L1ME2 LINE L1 5900 6146 -18 237 200 18 0 chr9 74429855 74429910 -43432717 - MST-int LTR MaLR -620 1031 976 1058 203 52 22 chr9 74429936 74430207 -43432420 + MSTA LTR MaLR 96 374 -54 412 242 26 33 chr9 74430225 74430378 -43432249 - THE1-int LTR MaLR -963 617 466 5848 221 50 20 chr9 74430380 74431952 -43430675 + MSTA-int LTR MaLR 32 1651 0 1173 244 31 21 chr9 74432374 74432661 -43429966 + AluJo SINE Alu 2 291 -11 212 208 0 21 chr9 74433068 74433116 -43429511 + L2 LINE L2 3262 3308 -5 1529 231 27 0 chr9 74433313 74433608 -43429019 - AluJo SINE Alu -9 303 1 759 213 81 35 chr9 74435678 74435936 -43426691 + L1MB8 LINE L1 5903 6172 -6 403 320 54 0 chr9 74436725 74436872 -43425755 - L2 LINE L2 -438 2876 2722 453 248 51 22 chr9 74437861 74437998 -43424629 - MIR SINE MIR -32 230 90 244 324 0 0 chr9 74438172 74438240 -43424387 - MIR SINE MIR -125 137 70 236 297 110 26 chr9 74438347 74438502 -43424125 + MIR SINE MIR 95 262 0 218 254 45 30 chr9 74438770 74438837 -43423790 + L2 LINE L2 3240 3307 -6 835 197 7 14 chr9 74439709 74439856 -43422771 - FRAM SINE Alu -30 146 1 636 239 128 21 chr9 74440288 74440670 -43421957 + L2 LINE L2 2615 3044 -269 452 182 80 0 chr9 74441055 74441143 -43421484 + MLT1E2 LTR MaLR 114 208 -418 1541 201 158 19 chr9 74441149 74441616 -43421011 - L1ME LINE L1 -370 5794 5263 8162 81 9 151 chr9 74441619 74443159 -43419468 - SVA Other Other 0 1386 66 207 243 0 40 chr9 74443259 74443333 -43419294 + CT-rich Low_complexity Low_complexity 2 72 0 1979 143 20 0 chr9 74443364 74443657 -43418970 - AluSx SINE Alu -13 299 1 1451 193 0 30 chr9 74444076 74444372 -43418255 - AluJb SINE Alu -20 292 6 775 240 68 5 chr9 74444415 74444607 -43418020 + MIR SINE MIR 35 238 -24 224 316 53 0 chr9 74444840 74444916 -43417711 - MER91C DNA MER1_type -34 106 27 3382 192 50 48 chr9 74445452 74446680 -43415947 + L1MB8 LINE L1 4680 5912 -266 1095 183 37 0 chr9 74446680 74446921 -43415706 + L1MA8 LINE L1 6039 6288 -3 3382 192 50 48 chr9 74446921 74447183 -43415444 + L1MB8 LINE L1 5912 6172 -6 1566 190 22 26 chr9 74447187 74447498 -43415129 + AluJo SINE Alu 1 310 -2 279 235 78 0 chr9 74448209 74448307 -43414320 - MIR SINE MIR -66 142 22 1261 432 25 0 chr9 74448390 74448670 -43413957 - AluSq SINE Alu -16 287 1 195 240 0 60 chr9 74448901 74448951 -43413676 - MIR SINE MIR -6 256 210 683 308 186 31 chr9 74448952 74449365 -43413262 + L2 LINE L2 2440 2916 -398 2172 114 0 7 chr9 74450015 74450323 -43412304 - AluSq SINE Alu -7 306 1 198 103 0 0 chr9 74450427 74450456 -43412171 + (GAA)n Simple_repeat Simple_repeat 2 30 0 7942 171 17 16 chr9 74450882 74451384 -43411243 + L1 LINE L1 3796 4296 -1850 2221 119 0 0 chr9 74451384 74451687 -43410940 + AluSx SINE Alu 1 303 -9 7942 171 17 16 chr9 74451687 74452719 -43409908 + L1 LINE L1 4296 5331 -815 1298 175 5 18 chr9 74452719 74452942 -43409685 + AluJo SINE Alu 1 220 -92 991 153 53 37 chr9 74453040 74453230 -43409397 + AluJb SINE Alu 14 206 -106 1548 152 0 0 chr9 74453562 74453786 -43408841 + AluSx SINE Alu 1 224 -88 2394 86 0 6 chr9 74454481 74454794 -43407833 + AluSx SINE Alu 1 311 -1 29 0 0 0 chr9 74455347 74455376 -43407251 + AT_rich Low_complexity Low_complexity 1 29 0 2047 129 13 7 chr9 74455604 74455906 -43406721 + AluSx SINE Alu 1 304 -8 1546 190 5 94 chr9 74456300 74456673 -43405954 + MLT1A1 LTR MaLR 26 365 0 356 322 71 16 chr9 74456880 74457063 -43405564 - MIR SINE MIR -33 229 37 3956 184 57 43 chr9 74457143 74458211 -43404416 + L1MB4 LINE L1 5101 6180 0 280 271 140 9 chr9 74458214 74458321 -43404306 + MIR SINE MIR 138 258 -4 441 307 78 17 chr9 74458435 74458728 -43403899 - L1ME4a LINE L1 -216 5905 5595 3559 266 44 24 chr9 74458828 74460228 -43402399 - L1ME4a LINE L1 -2237 3909 2483 539 172 160 53 chr9 74460214 74460383 -43402244 - L1MA9 LINE L1 0 6312 6126 * 357 278 113 119 chr9 74460723 74461506 -43401121 - L1M2 LINE L1 -5455 1394 678 339 274 113 96 chr9 74461111 74461622 -43401005 + L1M2 LINE L1 515 1034 -5815 * 432 275 61 69 chr9 74561838 74562100 -43300527 + MLT1K LTR MaLR 326 585 -3 551 286 78 15 chr9 74562284 74562635 -43299992 + MLT1G1 LTR MaLR 17 549 0 366 61 0 0 chr9 74563905 74563954 -43298673 + (CA)n Simple_repeat Simple_repeat 1 49 0 223 235 0 39 chr9 74564087 74564138 -43298489 - MIR SINE MIR -69 139 91 640 125 0 0 chr9 74564154 74564258 -43298369 + AluJb SINE Alu 209 312 0 392 211 11 33 chr9 74564280 74564370 -43298257 + MER58A DNA MER1_type 19 106 -1 1292 218 67 45 chr9 74565516 74565892 -43296735 - MLT1B LTR MaLR -6 384 1 296 284 0 0 chr9 74566163 74566251 -43296376 + L1M4 LINE L1 4748 4835 -1311 930 38 27 54 chr9 74566273 74566458 -43296169 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 2459 88 0 3 chr9 74566480 74566787 -43295840 + AluSg SINE Alu 1 306 -4 522 163 8 54 chr9 74566829 74566958 -43295669 + L1MC4 LINE L1 7900 8022 -20 1386 185 70 24 chr9 74567232 74567573 -43295054 - L1MB7 LINE L1 -10 6174 5818 2181 193 21 64 chr9 74567574 74568139 -43294488 + LTR55 LTR ERV 3 543 -5 2502 187 68 17 chr9 74568143 74569139 -43293488 - L1MB7 LINE L1 -363 5821 4770 2338 135 59 15 chr9 74569139 74569547 -43293080 - MSTB LTR MaLR 0 426 1 2502 187 68 17 chr9 74569547 74569571 -43293056 - L1MB7 LINE L1 -1414 4770 4749 329 303 78 25 chr9 74571054 74571093 -43291534 - L1ME4a LINE L1 -1 6120 6085 2055 174 28 0 chr9 74571093 74571485 -43291142 + MER57A LTR ERV1 1 403 0 329 303 78 25 chr9 74571485 74571765 -43290862 - L1ME4a LINE L1 -36 6085 5784 2008 128 21 51 chr9 74572288 74572663 -43289964 + THE1B LTR MaLR 1 364 0 406 219 71 77 chr9 74572814 74572997 -43289630 + LTR33 LTR ERVL 1 182 -339 510 233 93 26 chr9 74573083 74573276 -43289351 + LTR33 LTR ERVL 314 519 -2 254 303 37 9 chr9 74573614 74573723 -43288904 - MIR SINE MIR -60 148 37 307 179 13 13 chr9 74574284 74574362 -43288265 + CT-rich Low_complexity Low_complexity 3 80 0 363 310 33 16 chr9 74574821 74575005 -43287622 - L1MC4a LINE L1 -1874 5934 5748 822 201 12 6 chr9 74575006 74575175 -43287452 - MLT1A2 LTR MaLR -2 372 203 1534 158 91 119 chr9 74575212 74575706 -43286921 + LTR12 LTR ERV1 1 480 -234 455 210 30 0 chr9 74575730 74575830 -43286797 - MLT1A2 LTR MaLR -271 103 1 262 218 0 35 chr9 74578528 74578615 -43284012 + C-rich Low_complexity Low_complexity 4 87 0 3749 178 131 5 chr9 74580051 74580806 -43281821 - MER21B LTR ERV1 -11 852 3 2261 155 36 19 chr9 74580888 74581302 -43281325 - MER21B-int LTR ERV1 -70 4121 3701 * 6680 175 28 21 chr9 74581300 74582609 -43280018 - MER21B-int LTR ERV1 -1199 2992 1674 601 254 12 52 chr9 74582681 74582776 -43279851 - MER21-int LTR ERV1 -2388 1803 1717 2426 68 0 10 chr9 74582776 74583068 -43279559 - AluSg SINE Alu -19 291 3 601 254 12 52 chr9 74583068 74583145 -43279482 - MER21-int LTR ERV1 -2474 1717 1638 918 211 60 22 chr9 74583223 74583455 -43279172 - MER21-int LTR ERV1 -2554 1637 1397 2339 129 0 0 chr9 74583678 74583988 -43278639 + AluSg SINE Alu 1 310 0 543 267 50 22 chr9 74584720 74584900 -43277727 - MIR SINE MIR -73 189 5 894 114 8 0 chr9 74586914 74587045 -43275582 - FLAM_C SINE Alu -1 132 1 1884 218 173 6 chr9 74587781 74588262 -43274365 - MLT1F1 LTR MaLR -6 561 1 287 344 25 6 chr9 74589546 74589703 -43272924 + MIR SINE MIR 45 204 -58 480 261 8 0 chr9 74589793 74589912 -43272715 + MER5C DNA MER1_type 45 164 -160 2833 7 0 10 chr9 74589915 74590248 -43272379 + AluYa5 SINE Alu 1 311 0 3075 188 70 3 chr9 74590255 74590936 -43271691 + L1MB2 LINE L1 5445 6171 0 317 213 213 50 chr9 74590945 74591086 -43271541 + MER5C DNA MER1_type 161 324 0 5168 140 111 48 chr9 74591266 74592356 -43270271 - MER52C LTR ERV1 -94 1184 26 2108 122 3 7 chr9 74593434 74593729 -43268898 + AluSq SINE Alu 1 294 -19 1109 124 30 0 chr9 74594408 74594577 -43268050 + AluSc SINE Alu 120 293 -16 2468 61 0 3 chr9 74595099 74595394 -43267233 - AluY SINE Alu -17 294 1 21 0 0 0 chr9 74595524 74595545 -43267082 + AT_rich Low_complexity Low_complexity 1 21 0 1602 170 50 134 chr9 74595631 74596167 -43266460 - MLT1D LTR MaLR 0 505 15 613 158 260 0 chr9 74596796 74596923 -43265704 - Tigger1 DNA MER2_type 0 2418 2259 * 3136 126 7 0 chr9 74596919 74597378 -43265249 - Tigger1 DNA MER2_type -482 1936 1475 720 180 0 43 chr9 74597382 74597521 -43265106 - FLAM_A SINE Alu -9 133 1 8819 132 54 6 chr9 74597523 74598928 -43263699 - Tigger1 DNA MER2_type -944 1474 2 24 0 0 0 chr9 74601861 74601885 -43260742 + AT_rich Low_complexity Low_complexity 1 24 0 866 139 194 10 chr9 74602096 74602297 -43260330 - Charlie1 DNA MER1_type 0 2761 2524 249 279 0 0 chr9 74602427 74602488 -43260139 - Charlie1 DNA MER1_type -2698 63 3 4091 174 71 37 chr9 74603387 74604203 -43258424 + MER21B LTR ERV1 1 844 -19 7268 96 25 4 chr9 74604700 74605681 -43256946 + THE1B-int LTR MaLR 579 1580 0 2106 146 33 33 chr9 74605681 74606045 -43256582 + THE1B LTR MaLR 1 364 0 2051 151 7 0 chr9 74606067 74606366 -43256261 + AluSx SINE Alu 1 301 -11 556 309 72 16 chr9 74606416 74606665 -43255962 + MLT1L LTR MaLR 340 602 -13 374 169 46 15 chr9 74608514 74608785 -43253842 + (TA)n Simple_repeat Simple_repeat 1 279 0 217 300 0 17 chr9 74609069 74609129 -43253498 + L3 LINE CR1 1515 1573 -4 222 280 0 13 chr9 74612061 74612136 -43250491 + T-rich Low_complexity Low_complexity 1 74 0 284 224 71 24 chr9 74613562 74613647 -43248980 - MER20B DNA MER1_type -650 133 45 462 309 109 19 chr9 74616956 74617487 -43245140 + HAL1b LINE L1 66 644 -704 2041 246 52 72 chr9 74617787 74617996 -43244631 + L1MC5 LINE L1 6484 6696 -1265 225 0 0 0 chr9 74617996 74618021 -43244606 + (CA)n Simple_repeat Simple_repeat 2 26 0 2041 246 52 72 chr9 74618021 74618924 -43243703 + L1MC5 LINE L1 6696 7516 -445 2362 111 33 28 chr9 74618970 74619332 -43243295 + THE1B LTR MaLR 1 364 0 361 90 90 12 chr9 74620679 74620845 -43241782 + (TG)n Simple_repeat Simple_repeat 1 179 0 545 54 66 30 chr9 74620856 74621023 -43241604 + (TG)n Simple_repeat Simple_repeat 1 173 0 329 240 191 44 chr9 74622322 74622505 -43240122 + MLT1K LTR MaLR 374 583 -5 292 273 94 8 chr9 74625113 74625241 -43237386 + MIR SINE MIR 108 246 -16 223 239 34 34 chr9 74625765 74625853 -43236774 + C-rich Low_complexity Low_complexity 1 88 0 1701 132 67 57 chr9 74627279 74627424 -43235203 + THE1C LTR MaLR 1 143 -232 2270 84 14 0 chr9 74627424 74627711 -43234916 - AluSg SINE Alu -19 291 1 1701 132 67 57 chr9 74627711 74627936 -43234691 + THE1C LTR MaLR 143 375 0 1632 148 0 34 chr9 74628887 74629150 -43233477 + AluJb SINE Alu 44 297 -15 2425 143 79 13 chr9 74629353 74629823 -43232804 - L1MB3 LINE L1 -2 6181 5681 250 306 32 45 chr9 74630022 74630179 -43232448 - MER5B DNA MER1_type -21 157 3 231 61 0 0 chr9 74630681 74630714 -43231913 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 244 242 110 11 chr9 74631417 74631508 -43231119 - MIR3 SINE MIR -48 160 61 315 128 0 0 chr9 74631800 74631847 -43230780 - Alu SINE Alu -9 291 245 2155 108 7 7 chr9 74631949 74632246 -43230381 + AluSx SINE Alu 1 297 -15 1149 151 12 0 chr9 74632249 74632421 -43230206 + AluSg/x SINE Alu 132 305 -5 260 297 27 45 chr9 74632831 74632942 -43229685 - MER112 DNA MER1_type -103 157 49 21 0 0 0 chr9 74634115 74634136 -43228491 + AT_rich Low_complexity Low_complexity 1 21 0 1440 207 23 69 chr9 74635964 74636356 -43226271 + MLT1A2 LTR MaLR 1 374 0 373 313 70 8 chr9 74636527 74636655 -43225972 - L2 LINE L2 0 3272 3137 373 312 239 23 chr9 74639569 74640670 -43221957 + L2 LINE L2 73 1411 -1903 358 258 84 53 chr9 74641190 74641380 -43221247 + L2 LINE L2 2125 2320 -994 373 324 75 25 chr9 74642791 74643069 -43219558 + L2 LINE L2 3019 3310 -3 464 239 149 42 chr9 74643072 74643361 -43219266 - MER74B LTR ERVL 0 622 303 375 91 121 121 chr9 74643362 74643436 -43219191 - LTR12 LTR ERV1 -135 579 503 2300 59 0 17 chr9 74643436 74643726 -43218901 - AluY SINE Alu -11 300 16 375 91 121 121 chr9 74643726 74643750 -43218877 - LTR12 LTR ERV1 -210 504 481 340 176 33 22 chr9 74643751 74643842 -43218785 - LTR30 LTR ERV1 -79 643 552 1291 117 4 54 chr9 74643855 74644095 -43218532 - LTR12 LTR ERV1 -434 280 53 235 231 0 0 chr9 74644095 74644147 -43218480 - LTR30 LTR ERV1 -670 52 1 * 626 225 34 47 chr9 74644147 74644375 -43218252 - MER74A LTR ERVL -322 236 12 851 228 63 104 chr9 74644608 74644823 -43217804 - L1ME3A LINE L1 -5 6165 5978 2548 68 0 3 chr9 74644823 74645134 -43217493 - AluSg SINE Alu 0 310 1 851 228 63 104 chr9 74645134 74645378 -43217249 - L1ME3A LINE L1 -192 5978 5725 325 280 50 124 chr9 74646226 74646622 -43216005 - L1M2 LINE L1 -5708 1141 775 311 284 93 93 chr9 74646573 74646918 -43215709 + L1M2 LINE L1 677 1021 -5828 * 393 80 53 26 chr9 74646940 74647053 -43215574 + (GTGTG)n Simple_repeat Simple_repeat 1 116 0 200 257 29 14 chr9 74647058 74647128 -43215499 + MER5C DNA MER1_type 94 164 -160 2717 10 0 10 chr9 74647131 74647464 -43215163 + AluYa5 SINE Alu 1 311 0 2843 188 70 3 chr9 74647471 74648152 -43214475 + L1MB2 LINE L1 5445 6171 0 315 199 213 50 chr9 74648161 74648302 -43214325 + MER5C DNA MER1_type 161 324 0 4849 138 111 49 chr9 74648482 74649573 -43213054 - MER52C LTR ERV1 -94 1184 26 196 273 0 0 chr9 74649644 74649688 -43212939 + L2 LINE L2 3020 3063 -209 317 292 84 45 chr9 74650952 74651154 -43211473 + L1MEd LINE L1 11 220 -5899 431 136 0 0 chr9 74651740 74651799 -43210828 - AluJ/FRAM SINE Alu -34 278 220 468 297 160 79 chr9 74651846 74652101 -43210526 + HAL1 LINE L1 1180 1480 -1027 1803 155 0 39 chr9 74652101 74652411 -43210216 + AluJb SINE Alu 1 298 -14 468 297 160 79 chr9 74652411 74652549 -43210078 + HAL1 LINE L1 1480 1605 -902 4076 128 187 90 chr9 74652549 74653997 -43208630 + pTR5 LTR ERV1 375 2438 0 706 193 0 82 chr9 74654010 74654181 -43208446 - AluJo SINE Alu -153 159 3 282 284 0 0 chr9 74654252 74654319 -43208308 - L2 LINE L2 -5 3267 3201 2002 262 93 11 chr9 74656596 74657424 -43205203 + L2 LINE L2 2412 3308 -5 351 134 0 15 chr9 74658012 74658079 -43204548 - Alu SINE Alu -2 300 235 318 208 0 14 chr9 74658765 74658835 -43203792 + MIR3 SINE MIR 103 172 -36 1692 147 30 23 chr9 74660353 74660653 -43201974 + AluSx SINE Alu 1 302 -10 437 309 60 64 chr9 74660728 74660977 -43201650 - MIR SINE MIR 0 262 15 348 150 9 26 chr9 74661680 74661788 -43200839 - MLT1D LTR MaLR -321 184 1 2760 226 83 5 chr9 74661788 74662621 -43200006 + L1MC4 LINE L1 6900 7797 -245 346 217 157 66 chr9 74662766 74662964 -43199663 + L1MC4 LINE L1 7802 8017 -25 297 0 0 0 chr9 74662983 74663016 -43199611 + (CA)n Simple_repeat Simple_repeat 2 34 0 377 229 0 12 chr9 74663281 74663364 -43199263 - Tigger5 DNA MER2_type 0 2323 2242 315 179 0 0 chr9 74663361 74663417 -43199210 + Tigger5 DNA MER2_type 2265 2320 -3 * 322 231 0 26 chr9 74663427 74663505 -43199122 - Tigger5 DNA MER2_type -2247 76 1 295 251 92 60 chr9 74663543 74663794 -43198833 - L1MC4a LINE L1 -1900 5908 5650 313 242 75 68 chr9 74664043 74664090 -43198537 - L1MC4a LINE L1 -825 5321 5276 2218 110 51 23 chr9 74664090 74664444 -43198183 + THE1B LTR MaLR 1 364 0 313 242 75 68 chr9 74664444 74664557 -43198070 - L1MC4a LINE L1 -870 5276 5160 1878 202 37 7 chr9 74664607 74665042 -43197585 - MLT1C LTR MaLR 0 467 20 677 235 132 0 chr9 74665070 74665283 -43197344 - L1MC4a LINE L1 -2402 3744 3504 738 158 8 39 chr9 74665310 74665437 -43197190 + AluJb SINE Alu 84 206 -106 1236 219 133 45 chr9 74665437 74665835 -43196792 - MLT1D LTR MaLR -72 433 1 8762 32 6 2 chr9 74666394 74667521 -43195106 - L1PA3 LINE L1 -759 5387 4256 6282 35 31 0 chr9 74667521 74668286 -43194341 + L1PA3 LINE L1 5359 6155 0 2350 132 22 8 chr9 74669306 74669676 -43192951 + THE1C LTR MaLR 1 375 0 443 299 175 0 chr9 74669796 74669950 -43192677 + MER5A DNA MER1_type 9 189 0 33 43 0 0 chr9 74670337 74670384 -43192243 + AT_rich Low_complexity Low_complexity 1 47 0 393 161 8 67 chr9 74670574 74670692 -43191935 + L1MB8 LINE L1 5910 6015 -151 648 172 40 0 chr9 74670692 74670843 -43191784 + L1MA10 LINE L1 6175 6331 -3 1017 257 25 12 chr9 74671957 74672202 -43190425 + MIR SINE MIR 15 262 0 2371 81 3 0 chr9 74672574 74672869 -43189758 - AluY SINE Alu -15 296 1 1368 154 70 4 chr9 74672916 74673189 -43189438 - L1MB3 LINE L1 -8 6175 5885 305 202 22 22 chr9 74673216 74673305 -43189322 - L1M4c LINE L1 -2073 4309 4221 1321 173 12 29 chr9 74673306 74673549 -43189078 - AluSx SINE Alu -10 302 64 5423 235 37 11 chr9 74673574 74673975 -43188652 - L1M4c LINE L1 -2162 4220 3831 2287 103 3 0 chr9 74673975 74674276 -43188351 - AluSg SINE Alu -8 302 1 5423 235 37 11 chr9 74674276 74675887 -43186740 - L1M4c LINE L1 -2551 3831 2151 3219 210 61 65 chr9 74675934 74676132 -43186495 - L1M4c LINE L1 -4460 1924 1727 2274 93 0 26 chr9 74676132 74676434 -43186193 - AluSg1 SINE Alu -13 296 3 3219 210 61 65 chr9 74676434 74677470 -43185157 - L1M4c LINE L1 -4657 1727 823 1633 129 30 0 chr9 74677561 74677793 -43184834 - AluSx SINE Alu -73 239 1 10497 125 34 5 chr9 74677794 74679535 -43183092 - Tigger1 DNA MER2_type -626 1792 1 2352 85 0 0 chr9 74679624 74679917 -43182710 - AluY SINE Alu -18 293 1 234 234 16 0 chr9 74679919 74679983 -43182644 - L1M4 LINE L1 -3572 2574 2510 409 307 45 38 chr9 74679985 74680249 -43182378 - L1M4 LINE L1 -3697 2449 2184 7383 97 6 22 chr9 74680436 74681524 -43181103 + MER11C LTR ERVK 1 1071 0 4611 155 31 31 chr9 74681620 74682627 -43180000 - L1MB3 LINE L1 -5 6178 5173 305 304 17 26 chr9 74682633 74682748 -43179879 + MER5A DNA MER1_type 46 159 -30 516 299 131 59 chr9 74683268 74683880 -43178747 - HAL1 LINE L1 -1041 1466 811 569 211 90 6 chr9 74685076 74685232 -43177395 + L1MD1 LINE L1 39 207 -6333 791 208 27 107 chr9 74685306 74685681 -43176946 + L1MDa LINE L1 2946 3290 -3250 1486 251 198 24 chr9 74685720 74686662 -43175965 + L1MD1 LINE L1 197 1456 -5084 3124 220 74 50 chr9 74686662 74688760 -43173867 + L1MD1 LINE L1 1805 3984 -2556 * 4536 155 20 8 chr9 74688758 74689617 -43173010 + L1MD1 LINE L1 5768 6636 0 207 320 40 100 chr9 74689883 74690183 -43172444 + L2 LINE L2 2395 2676 -638 184 292 46 0 chr9 74691211 74691276 -43171351 + L3b LINE CR1 1422 1489 -94 416 304 92 57 chr9 74692213 74692296 -43170331 - MIR SINE MIR -6 256 177 2103 138 3 7 chr9 74692296 74692601 -43170026 - AluSx SINE Alu -8 304 1 416 304 92 57 chr9 74692601 74692744 -43169883 - MIR SINE MIR -85 177 22 337 283 0 0 chr9 74693521 74693620 -43169007 + L1MDa LINE L1 4881 4979 -1561 1643 288 109 38 chr9 74693764 74693810 -43168817 + HAL1 LINE L1 1044 1085 -1422 1952 118 21 4 chr9 74693810 74694089 -43168538 + AluSg SINE Alu 11 294 -16 1643 288 109 38 chr9 74694089 74694842 -43167785 + HAL1 LINE L1 1085 1900 -607 259 175 0 0 chr9 74695395 74695452 -43167175 + HAL1 LINE L1 1710 1766 -741 293 285 21 31 chr9 74695895 74696088 -43166539 + L1MEd LINE L1 591 781 -5338 260 219 23 62 chr9 74696142 74696270 -43166357 + L1MEd LINE L1 938 1060 -5059 306 225 192 17 chr9 74699168 74699288 -43163339 - L1MC2 LINE L1 0 6344 6204 5369 148 17 41 chr9 74699315 74700369 -43162258 - L1MC2 LINE L1 -118 6226 5191 28 0 0 0 chr9 74701372 74701400 -43161227 + AT_rich Low_complexity Low_complexity 1 28 0 26 30 0 0 chr9 74701462 74701495 -43161132 + AT_rich Low_complexity Low_complexity 1 33 0 32 0 0 0 chr9 74701668 74701700 -43160927 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr9 74703369 74703398 -43159229 + AT_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chr9 74703665 74703702 -43158925 + AT_rich Low_complexity Low_complexity 1 37 0 2228 83 0 3 chr9 74705089 74705377 -43157250 + AluSc SINE Alu 1 287 -22 7910 111 46 22 chr9 74705571 74706800 -43155827 - Tigger2 DNA MER2_type 0 2718 1461 2197 77 21 3 chr9 74707003 74707289 -43155338 + AluSg SINE Alu 1 291 -19 24 32 0 0 chr9 74708115 74708146 -43154481 + AT_rich Low_complexity Low_complexity 1 31 0 345 286 16 77 chr9 74708304 74708486 -43154141 - MIR SINE MIR -82 180 10 2279 93 0 7 chr9 74709179 74709479 -43153148 + AluSx SINE Alu 1 298 -14 449 279 229 29 chr9 74710847 74711202 -43151425 + L1MC4 LINE L1 6562 6873 -935 * 3625 177 64 38 chr9 74711186 74711512 -43151115 + L1ME1 LINE L1 4937 5253 -913 2228 107 0 0 chr9 74711512 74711802 -43150825 + AluSc SINE Alu 1 290 -19 3625 177 64 38 chr9 74711802 74712608 -43150019 + L1ME1 LINE L1 5253 6115 -51 186 43 0 0 chr9 74712664 74712687 -43149940 + (GAAA)n Simple_repeat Simple_repeat 4 26 0 240 111 0 0 chr9 74712691 74712727 -43149900 + (CAAG)n Simple_repeat Simple_repeat 2 37 0 1313 256 72 88 chr9 74712771 74713677 -43148950 + L1MC4 LINE L1 7001 7892 -150 258 283 10 20 chr9 74713687 74713786 -43148841 + (CATA)n Simple_repeat Simple_repeat 1 98 0 584 228 104 28 chr9 74713865 74714076 -43148551 + HAL1 LINE L1 91 317 -2190 549 236 129 33 chr9 74714154 74714395 -43148232 + HAL1 LINE L1 2239 2502 -5 26 0 0 0 chr9 74714544 74714570 -43148057 + AT_rich Low_complexity Low_complexity 1 26 0 22 35 0 0 chr9 74714699 74714728 -43147899 + AT_rich Low_complexity Low_complexity 1 29 0 263 327 142 0 chr9 74714743 74714856 -43147771 - L2 LINE L2 -6 3266 3138 364 281 0 89 chr9 74714938 74714969 -43147658 + MIR SINE MIR 4 36 -226 1624 177 67 0 chr9 74714969 74715252 -43147375 + AluJo SINE Alu 1 302 -10 364 281 0 89 chr9 74715252 74715355 -43147272 + MIR SINE MIR 36 126 -136 369 174 0 105 chr9 74715356 74715442 -43147185 + LTR40c LTR ERVL 389 465 0 388 267 68 0 chr9 74715442 74715630 -43146997 + L1MEc LINE L1 2180 2389 -3826 673 176 56 0 chr9 74715641 74715783 -43146844 + L1ME1 LINE L1 5698 5847 -319 * 1234 249 35 5 chr9 74715780 74716149 -43146478 + L1MEc LINE L1 2399 2778 -3437 * 2292 226 70 32 chr9 74716145 74717026 -43145601 + L1ME2 LINE L1 5410 6120 -44 1065 157 86 0 chr9 74716798 74716995 -43145632 + MER58C DNA MER1_type 2 215 0 234 327 19 25 chr9 74716995 74717073 -43145554 + L1MA10 LINE L1 6252 6329 -5 184 325 0 0 chr9 74717145 74717185 -43145442 - MIR SINE MIR -97 111 72 478 337 27 57 chr9 74717568 74717605 -43145022 + L2 LINE L2 2590 2627 -687 1726 147 16 95 chr9 74717605 74718028 -43144599 - MLT1B LTR MaLR 0 390 1 478 337 27 57 chr9 74718028 74718287 -43144340 + L2 LINE L2 2627 2877 -437 318 80 0 0 chr9 74718287 74718337 -43144290 + (TG)n Simple_repeat Simple_repeat 2 51 0 905 144 0 0 chr9 74718659 74718791 -43143836 + AluSq/x SINE Alu 1 132 -181 994 293 80 63 chr9 74719485 74720076 -43142551 + L2 LINE L2 1302 1902 -1412 640 124 0 0 chr9 74721070 74721159 -43141468 - 5S rRNA rRNA -32 89 1 574 236 182 18 chr9 74721474 74721699 -43140928 - MIR SINE MIR 0 262 1 180 311 135 0 chr9 74721742 74721816 -43140811 + L2 LINE L2 3230 3313 0 276 318 93 14 chr9 74722769 74723058 -43139569 + L1MC/D LINE L1 4705 5016 -1130 431 323 146 12 chr9 74723331 74723653 -43138974 + L1MC/D LINE L1 5355 5719 -2089 28 29 0 0 chr9 74723697 74723732 -43138895 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr9 74723843 74723868 -43138759 + AT_rich Low_complexity Low_complexity 1 25 0 368 284 103 41 chr9 74724860 74725054 -43137573 + HAL1 LINE L1 1431 1636 -871 1155 141 0 0 chr9 74725073 74725236 -43137391 - AluJb SINE Alu -13 299 137 347 281 51 72 chr9 74725619 74725764 -43136863 + L1MEc LINE L1 2923 3063 -3152 1743 145 24 27 chr9 74725764 74726060 -43136567 - AluJo SINE Alu -17 295 1 347 281 51 72 chr9 74726060 74726149 -43136478 + L1MEc LINE L1 3063 3152 -3063 1522 168 119 7 chr9 74726183 74726486 -43136141 - MER2 DNA MER2_type -8 337 1 300 53 0 0 chr9 74726521 74726559 -43136068 + (CA)n Simple_repeat Simple_repeat 1 38 0 188 132 0 26 chr9 74726576 74726614 -43136013 + (GAAA)n Simple_repeat Simple_repeat 4 40 0 1691 174 0 10 chr9 74726682 74726980 -43135647 - AluJb SINE Alu -1 311 17 230 328 120 8 chr9 74728269 74728394 -43134233 + MIR SINE MIR 47 185 -77 803 287 114 33 chr9 74728542 74728806 -43133821 + L1MEc LINE L1 1237 1478 -4737 1871 160 0 13 chr9 74728806 74729119 -43133508 + AluJb SINE Alu 3 311 -1 267 79 0 0 chr9 74729124 74729162 -43133465 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 803 287 114 33 chr9 74729162 74729522 -43133105 + L1MEc LINE L1 1481 1810 -4405 2296 58 4 0 chr9 74729522 74729799 -43132828 + AluY SINE Alu 21 298 -13 803 287 114 33 chr9 74729799 74730348 -43132279 + L1MEc LINE L1 1810 2470 -3745 938 258 172 36 chr9 74730407 74730632 -43131995 + L1MEc LINE L1 2551 2744 -3471 2427 93 0 3 chr9 74730632 74730943 -43131684 + AluSq SINE Alu 1 310 -3 938 258 172 36 chr9 74730943 74731208 -43131419 + L1MEc LINE L1 2744 2971 -3244 2248 147 17 0 chr9 74731208 74731568 -43131059 + MER47A DNA MER2_type 1 366 0 938 258 172 36 chr9 74731568 74731779 -43130848 + L1MEc LINE L1 2971 3349 -2866 791 302 50 19 chr9 74731807 74732270 -43130357 + L1MEc LINE L1 3435 3911 -2304 560 212 30 0 chr9 74732376 74732804 -43129823 + L1MEc LINE L1 2306 2919 -3621 2041 138 10 0 chr9 74732805 74733103 -43129524 + AluSx SINE Alu 1 301 -11 367 285 94 66 chr9 74733109 74733397 -43129230 + L1MC4a LINE L1 5609 5904 -1904 2019 166 70 27 chr9 74733455 74734055 -43128572 + L1MB5 LINE L1 5117 5743 -441 423 216 27 0 chr9 74734055 74734166 -43128461 + L1MB5 LINE L1 6060 6173 -1 1982 91 4 18 chr9 74734302 74734577 -43128050 - AluSp SINE Alu -22 291 21 1632 138 35 4 chr9 74734593 74734854 -43127773 + AluJb SINE Alu 26 294 -18 272 306 155 22 chr9 74735061 74735231 -43127396 + MIR SINE MIR 45 238 -24 22 70 0 0 chr9 74735685 74735728 -43126899 + AT_rich Low_complexity Low_complexity 1 43 0 770 243 20 1 chr9 74735860 74736034 -43126593 + L1ME2 LINE L1 5993 6170 0 183 80 0 0 chr9 74736035 74736060 -43126567 + (CA)n Simple_repeat Simple_repeat 2 26 0 29 0 0 0 chr9 74736612 74736641 -43125986 + AT_rich Low_complexity Low_complexity 1 29 0 503 193 55 92 chr9 74736696 74736914 -43125713 - MLT1J1 LTR MaLR -234 212 3 413 245 73 35 chr9 74737190 74737539 -43125088 - LTR1B LTR ERV1 -399 427 32 2956 180 80 17 chr9 74737543 74738347 -43124280 + Charlie1 DNA MER1_type 1514 2414 -347 539 186 55 91 chr9 74738505 74738725 -43123902 - MLT1J1 LTR MaLR -234 212 1 287 399 84 29 chr9 74740075 74740211 -43122416 + L2 LINE L2 3022 3178 -94 3106 83 28 0 chr9 74740211 74740643 -43121984 - MLT2A1 LTR ERVL 0 444 1 287 399 84 29 chr9 74740643 74740744 -43121883 + L2 LINE L2 3178 3272 0 1749 175 0 6 chr9 74741018 74741332 -43121295 + AluJb SINE Alu 1 312 0 746 238 5 32 chr9 74741431 74741620 -43121007 - MER5A DNA MER1_type -4 185 2 398 333 100 22 chr9 74742436 74742667 -43119960 + L2 LINE L2 1698 1946 -1368 202 290 0 14 chr9 74742794 74742863 -43119764 + A-rich Low_complexity Low_complexity 3 70 0 2202 111 3 0 chr9 74743458 74743756 -43118871 - AluSc SINE Alu -10 299 1 21 0 0 0 chr9 74743869 74743890 -43118737 + AT_rich Low_complexity Low_complexity 1 21 0 2246 173 72 0 chr9 74743927 74744325 -43118302 - LOR1b LTR ERV1 -1 460 27 186 43 0 0 chr9 74744325 74744348 -43118279 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2246 173 72 0 chr9 74744348 74744378 -43118249 - LOR1b LTR ERV1 -434 27 1 1571 231 108 29 chr9 74744953 74745498 -43117129 + MLT1E LTR MaLR 1 588 -5 344 278 42 110 chr9 74746678 74746869 -43115758 - MER5B DNA MER1_type 0 178 1 6419 17 3 7 chr9 74748074 74748827 -43113800 + L1PA3 LINE L1 5403 6152 -3 334 205 163 65 chr9 74748854 74749007 -43113620 + L2 LINE L2 2414 2595 -719 896 201 105 34 chr9 74749007 74749216 -43113411 - MER58A DNA MER1_type 0 224 1 334 205 163 65 chr9 74749216 74749277 -43113350 + L2 LINE L2 2595 2649 -665 243 268 163 47 chr9 74749300 74749490 -43113137 + L2 LINE L2 3085 3296 -17 1720 134 62 10 chr9 74749506 74749797 -43112830 - AluJo SINE Alu -6 306 1 452 234 210 39 chr9 74750879 74751084 -43111543 - MIR SINE MIR -6 256 17 1343 200 123 45 chr9 74752432 74752897 -43109730 - MLT1D LTR MaLR 0 505 5 385 244 110 72 chr9 74753038 74753247 -43109380 + MIR SINE MIR 46 262 0 2072 91 0 18 chr9 74753325 74753600 -43109027 + AluSc SINE Alu 1 270 -39 2836 3 0 0 chr9 74753999 74754305 -43108322 - AluYa5 SINE Alu -5 306 1 557 142 0 28 chr9 74755074 74755180 -43107447 + L1MB2 LINE L1 6068 6170 -1 3659 140 16 11 chr9 74755464 74756093 -43106534 + L1PB4 LINE L1 5516 6147 -9 904 340 29 21 chr9 74756114 74756628 -43105999 + L1ME LINE L1 103 620 -5499 1613 288 128 18 chr9 74757097 74757514 -43105113 + L1M4 LINE L1 2951 3321 -2825 2086 123 7 7 chr9 74757514 74757823 -43104804 + AluSc SINE Alu 1 309 0 1613 288 128 18 chr9 74757823 74758138 -43104489 + L1M4 LINE L1 3321 3600 -2546 303 104 0 0 chr9 74758138 74758186 -43104441 + (TAA)n Simple_repeat Simple_repeat 2 49 0 1613 288 128 18 chr9 74758186 74759035 -43103592 + L1M4 LINE L1 3600 4708 -1438 212 204 0 41 chr9 74760160 74760209 -43102418 + L3 LINE CR1 1526 1572 -5 2249 66 30 23 chr9 74761142 74761446 -43101181 - AluY SINE Alu -5 306 1 470 277 0 39 chr9 74762251 74762381 -43100246 - L2 LINE L2 0 3272 3148 1043 98 0 0 chr9 74762610 74762743 -43099884 + AluSg SINE Alu 1 133 -177 2183 108 3 16 chr9 74762743 74763049 -43099578 + AluSg SINE Alu 1 302 -8 2256 85 7 0 chr9 74763267 74763549 -43099078 - AluSc SINE Alu -25 284 1 7707 219 40 21 chr9 74763710 74765946 -43096681 + L1 LINE L1 2527 4805 -1341 1176 100 25 10 chr9 74765960 74766160 -43096467 + L1MB3 LINE L1 5701 5903 -280 425 251 21 64 chr9 74766371 74766558 -43096069 + L1ME LINE L1 2214 2392 -3737 406 285 92 65 chr9 74766577 74767272 -43095355 + L1ME LINE L1 4248 4961 -1168 182 180 40 0 chr9 74767302 74767352 -43095275 + (TATATG)n Simple_repeat Simple_repeat 5 56 0 239 252 108 14 chr9 74767358 74767497 -43095130 + L1ME LINE L1 4989 5140 -989 400 0 0 0 chr9 74767548 74767595 -43095032 - U2 snRNA snRNA -131 57 11 400 330 44 26 chr9 74767598 74767986 -43094641 + L1ME LINE L1 5237 5631 -514 2036 90 11 0 chr9 74768183 74768449 -43094178 + AluSq SINE Alu 32 300 -13 187 302 19 0 chr9 74769110 74769163 -43093464 - L2 LINE L2 -542 2772 2719 251 281 0 0 chr9 74771634 74771691 -43090936 - L2 LINE L2 -2 3270 3214 206 292 28 14 chr9 74771964 74772036 -43090591 + L2 LINE L2 2924 2996 -317 507 259 54 91 chr9 74772945 74773482 -43089145 + L1MC4 LINE L1 7525 8041 -1 1302 230 62 24 chr9 74775523 74775862 -43086765 - L1ME3 LINE L1 -23 6139 5788 955 159 11 37 chr9 74775937 74775951 -43086676 - L1MC1 LINE L1 -5 6328 6315 2444 67 0 3 chr9 74775951 74776248 -43086379 + AluY SINE Alu 1 296 -15 955 159 11 37 chr9 74776248 74776422 -43086205 - L1MC1 LINE L1 -18 6315 6145 6655 163 101 28 chr9 74776428 74777396 -43085231 - L1MCa LINE L1 -3873 2734 1838 2464 59 0 10 chr9 74777396 74777699 -43084928 - AluY SINE Alu -11 300 1 6655 163 101 28 chr9 74777699 74778485 -43084142 - L1MCa LINE L1 -4769 1838 800 2166 80 0 7 chr9 74778883 74779185 -43083442 - MER41A LTR ERV1 0 554 255 3803 139 66 70 chr9 74779194 74780069 -43082558 - MER52C LTR ERV1 0 1278 407 1375 58 0 5 chr9 74780065 74780253 -43082374 - MER41B LTR ERV1 -448 187 1 * 2395 69 0 7 chr9 74780282 74780585 -43082042 + AluSc SINE Alu 1 301 -8 441 188 12 0 chr9 74780848 74780928 -43081699 - MER5A DNA MER1_type -83 106 26 329 336 7 12 chr9 74781018 74781145 -43081482 + MIR SINE MIR 16 143 -65 226 128 26 0 chr9 74782639 74782678 -43079949 - MER5A DNA MER1_type -23 166 127 4556 171 12 30 chr9 74782679 74783006 -43079621 + L1MB4 LINE L1 4861 5192 -988 2347 87 0 3 chr9 74783006 74783306 -43079321 + AluSx SINE Alu 1 299 -13 4556 171 12 30 chr9 74783306 74783461 -43079166 + L1MB4 LINE L1 5192 5348 -832 2133 136 3 0 chr9 74783461 74783762 -43078865 + AluSx SINE Alu 1 302 -10 4556 171 12 30 chr9 74783762 74784614 -43078013 + L1MB4 LINE L1 5348 6177 -3 351 0 0 0 chr9 74784631 74784670 -43077957 + (GA)n Simple_repeat Simple_repeat 2 40 0 803 146 0 62 chr9 74784670 74784727 -43077900 - MER5A DNA MER1_type -60 129 70 2455 78 3 0 chr9 74784727 74785033 -43077594 - AluSc SINE Alu -2 307 1 803 146 0 62 chr9 74785033 74785110 -43077517 - MER5A DNA MER1_type -119 70 2 229 344 31 6 chr9 74785187 74785347 -43077280 + MER117 DNA MER1_type 31 194 -3 246 286 143 8 chr9 74786165 74786298 -43076329 - L2 LINE L2 -5 3308 3158 915 150 170 35 chr9 74786872 74787072 -43075555 + AluJo SINE Alu 84 310 -2 350 312 51 0 chr9 74787901 74788058 -43074569 - MER63A DNA MER1_type -4 206 42 646 301 80 21 chr9 74788114 74788502 -43074125 - LTR16C LTR ERVL -80 411 1 926 274 176 20 chr9 74789091 74789591 -43073036 - L2 LINE L2 -447 2867 2290 2189 99 3 0 chr9 74789712 74790040 -43072587 - AluSq SINE Alu 0 329 1 2098 143 0 0 chr9 74790045 74790338 -43072289 - AluSx SINE Alu -19 293 1 2328 135 19 3 chr9 74790368 74790746 -43071881 + MLT1B LTR MaLR 5 388 -2 21 0 0 0 chr9 74794378 74794399 -43068228 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr9 74794445 74794476 -43068151 + AT_rich Low_complexity Low_complexity 1 31 0 1087 76 0 0 chr9 74794547 74794691 -43067936 - L1PA7 LINE L1 -7 6147 6004 446 246 40 16 chr9 74795065 74795191 -43067436 + LTR33A LTR ERVL 59 187 -336 373 217 55 132 chr9 74795241 74795476 -43067151 + LTR33A LTR ERVL 307 523 0 228 35 0 0 chr9 74796732 74796761 -43065866 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2517 84 0 0 chr9 74796764 74797073 -43065554 - AluSc SINE Alu 0 309 1 987 167 6 0 chr9 74797076 74797232 -43065395 - FRAM SINE Alu -14 162 6 1688 194 0 25 chr9 74798059 74798379 -43064248 + AluJo SINE Alu 1 312 0 741 268 63 44 chr9 74798701 74799063 -43063564 - L2 LINE L2 -1 3312 2944 978 178 33 33 chr9 74799075 74799289 -43063338 - MER20 DNA MER1_type -5 214 1 1623 234 60 23 chr9 74799360 74800013 -43062614 - MER97a DNA MER1_type? -40 854 15 349 287 110 73 chr9 74800029 74800357 -43062270 - L2 LINE L2 -464 2850 2511 670 305 115 3 chr9 74800777 74801072 -43061555 + MLT1K LTR MaLR 36 363 -225 288 193 11 80 chr9 74801167 74801255 -43061372 + MLT1K LTR MaLR 505 586 -2 1670 178 110 19 chr9 74801324 74801752 -43060875 - MLT1C LTR MaLR 0 467 1 26 0 0 0 chr9 74802462 74802488 -43060139 + AT_rich Low_complexity Low_complexity 1 26 0 2343 88 3 0 chr9 74802488 74802783 -43059844 - AluSc SINE Alu -13 296 1 241 273 26 13 chr9 74803383 74803460 -43059167 + L2 LINE L2 3223 3300 -13 329 240 56 84 chr9 74803912 74804162 -43058465 + LTR16A1 LTR ERVL 209 451 -6 1576 222 142 34 chr9 74805930 74806453 -43056174 - MLT1G LTR MaLR -3 587 9 235 194 104 30 chr9 74806503 74806570 -43056057 + MIR SINE MIR 41 112 -150 2561 70 0 0 chr9 74806693 74806995 -43055632 - AluY SINE Alu -9 302 1 780 266 48 65 chr9 74807023 74807436 -43055191 - L1ME1 LINE L1 -4 6162 5757 1849 129 33 26 chr9 74808063 74808365 -43054262 - AluSx SINE Alu -7 305 2 443 294 55 18 chr9 74808418 74808636 -43053991 + L2 LINE L2 2625 2850 -464 696 264 7 0 chr9 74808652 74808807 -43053820 + MER45A DNA AcHobo 15 170 -8 414 276 36 100 chr9 74808809 74809001 -43053626 + L2 LINE L2 2872 3075 -238 1656 143 21 18 chr9 74809001 74809103 -43053524 + AluJo SINE Alu 23 123 -189 227 93 23 0 chr9 74809103 74809146 -43053481 + (TA)n Simple_repeat Simple_repeat 2 45 0 1656 143 21 18 chr9 74809146 74809329 -43053298 + AluJo SINE Alu 123 309 -3 414 276 36 100 chr9 74809329 74809604 -43053023 + L2 LINE L2 3075 3309 -4 190 95 48 24 chr9 74809942 74809984 -43052643 + GA-rich Low_complexity Low_complexity 2 44 0 379 252 34 17 chr9 74810209 74810328 -43052299 + GA-rich Low_complexity Low_complexity 5 125 0 304 272 110 38 chr9 74811865 74812012 -43050615 + MIR SINE MIR 10 146 -62 369 0 0 0 chr9 74812804 74812845 -43049782 + (TG)n Simple_repeat Simple_repeat 2 42 0 1024 255 59 65 chr9 74813876 74813927 -43048700 + HAL1 LINE L1 1842 1892 -615 2479 89 3 0 chr9 74813927 74814231 -43048396 + AluSp SINE Alu 1 305 -8 1024 255 59 65 chr9 74814231 74814429 -43048198 + HAL1 LINE L1 1892 2090 -417 2461 68 0 0 chr9 74814429 74814723 -43047904 - AluY SINE Alu -17 294 1 1024 255 59 65 chr9 74814723 74814981 -43047646 + HAL1 LINE L1 2090 2347 -160 192 40 0 0 chr9 74815015 74815040 -43047587 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 536 318 123 7 chr9 74815178 74815480 -43047147 - MLT1J LTR MaLR -174 337 1 290 258 0 0 chr9 74815482 74815544 -43047083 + HAL1 LINE L1 2446 2507 0 571 251 81 31 chr9 74815828 74816159 -43046468 - LTR16A LTR ERVL -22 428 38 4125 166 42 27 chr9 74816532 74817211 -43045416 + MER21B LTR ERV1 1 772 -159 1891 139 39 4 chr9 74817211 74817491 -43045136 - AluSx SINE Alu -11 301 12 4125 166 42 27 chr9 74817491 74817626 -43045001 + MER21B LTR ERV1 772 904 -27 2514 70 0 0 chr9 74821524 74821822 -43040805 - AluY SINE Alu -13 298 1 244 245 62 138 chr9 74822289 74822660 -43039967 - L1MC4a LINE L1 -1841 5967 5625 686 168 0 0 chr9 74822665 74822778 -43039849 - FLAM_A SINE Alu -12 130 18 1758 162 72 98 chr9 74823055 74823548 -43039079 - LTR12 LTR ERV1 -227 1528 54 244 250 0 0 chr9 74823548 74823600 -43039027 - LTR30 LTR ERV1 -670 52 1 193 170 85 0 chr9 74824726 74824773 -43037854 - L2 LINE L2 0 3313 3263 21 0 0 0 chr9 74825036 74825057 -43037570 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr9 74825076 74825104 -43037523 + AT_rich Low_complexity Low_complexity 1 28 0 340 276 333 7 chr9 74825333 74825765 -43036862 + HAL1 LINE L1 1592 2164 -343 323 258 32 118 chr9 74825984 74826298 -43036329 + HAL1 LINE L1 2220 2506 -1 4785 195 57 17 chr9 74826715 74828266 -43034361 - L1MB8 LINE L1 -2 6176 4522 1579 194 39 3 chr9 74828266 74828550 -43034077 - AluJo SINE Alu -18 294 1 4785 195 57 17 chr9 74828550 74829010 -43033617 - L1MB8 LINE L1 -1656 4522 4082 3717 199 48 33 chr9 74829131 74830109 -43032518 + L1MB4 LINE L1 4980 5983 -197 2433 94 0 0 chr9 74830109 74830417 -43032210 + AluSx SINE Alu 1 308 -4 3717 199 48 33 chr9 74830417 74830619 -43032008 + L1MB4 LINE L1 5983 6180 0 225 154 0 0 chr9 74831135 74831174 -43031453 + (TG)n Simple_repeat Simple_repeat 2 40 0 1517 215 0 13 chr9 74831546 74831857 -43030770 - AluJo SINE Alu -5 307 1 2178 138 0 3 chr9 74831984 74832295 -43030332 - AluSg SINE Alu 0 310 1 271 284 121 17 chr9 74832546 74832662 -43029965 + L2 LINE L2 3141 3268 -4 637 176 17 17 chr9 74833998 74834117 -43028510 - MER3 DNA MER1_type -89 120 2 775 199 0 0 chr9 74834140 74834286 -43028341 + FRAM SINE Alu 11 156 -20 283 308 198 21 chr9 74834300 74834638 -43027989 - L2 LINE L2 -1153 2161 1764 2242 106 0 0 chr9 74835031 74835337 -43027290 - AluSg SINE Alu 0 306 1 799 281 118 30 chr9 74835479 74835845 -43026782 - MLT1L LTR MaLR -52 563 166 272 224 41 10 chr9 74836194 74836292 -43026335 - L1ME LINE L1 -253 5868 5768 213 214 0 0 chr9 74836473 74836515 -43026112 - MER5A DNA MER1_type -143 46 5 672 219 27 14 chr9 74836519 74836665 -43025962 + AluJo SINE Alu 4 151 -161 1568 183 8 4 chr9 74836670 74836957 -43025670 + AluJo SINE Alu 22 309 0 998 137 64 44 chr9 74836971 74837175 -43025452 + MER3 DNA MER1_type 1 208 -1 4572 138 43 18 chr9 74837213 74837612 -43025015 + L1MA9 LINE L1 5420 5807 -505 2046 89 3 28 chr9 74837612 74837894 -43024733 + AluSx SINE Alu 1 275 -37 4572 138 43 18 chr9 74837894 74838328 -43024299 + L1MA9 LINE L1 5807 6274 -38 1856 123 4 0 chr9 74839545 74839814 -43022813 + AluSg SINE Alu 33 302 -8 267 304 32 8 chr9 74839933 74840058 -43022569 - MIR SINE MIR -8 254 127 337 220 34 59 chr9 74840413 74840531 -43022096 + MLT1L LTR MaLR 496 610 -5 648 269 11 5 chr9 74841211 74841397 -43021230 - MER117 DNA MER1_type -2 195 9 382 279 64 29 chr9 74842394 74842566 -43020061 + MIR SINE MIR 15 192 -70 479 250 119 41 chr9 74843956 74844111 -43018516 - MLT1L LTR MaLR -350 265 123 261 0 0 0 chr9 74844111 74844140 -43018487 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 2009 88 47 11 chr9 74844145 74844419 -43018208 - AluSx SINE Alu -28 284 1 479 250 119 41 chr9 74844419 74844501 -43018126 - MLT1L LTR MaLR -495 120 3 332 238 57 9 chr9 74844509 74844614 -43018013 + MER103 DNA DNA 56 165 -1 225 0 0 0 chr9 74844929 74844954 -43017673 + (CA)n Simple_repeat Simple_repeat 2 26 0 2396 93 0 7 chr9 74845298 74845608 -43017019 - AluSc SINE Alu -1 308 1 348 64 0 0 chr9 74845971 74846018 -43016609 + (TG)n Simple_repeat Simple_repeat 2 48 0 28 0 0 0 chr9 74846141 74846169 -43016458 + AT_rich Low_complexity Low_complexity 1 28 0 254 404 47 6 chr9 74846169 74846340 -43016287 - MIR SINE MIR -8 254 77 221 0 35 0 chr9 74847032 74847061 -43015566 + (TTTC)n Simple_repeat Simple_repeat 3 32 0 1554 81 45 0 chr9 74847494 74847737 -43014890 + AluSp SINE Alu 79 330 0 198 265 82 0 chr9 74848622 74848671 -43013956 + L2 LINE L2 3261 3313 0 362 304 206 0 chr9 74849500 74849519 -43013108 - HAL1 LINE L1 -2 2505 2491 1469 228 77 75 chr9 74849519 74850029 -43012598 + MLT1J LTR MaLR 1 511 0 362 304 206 0 chr9 74850029 74850203 -43012424 - HAL1 LINE L1 -16 2491 2272 194 295 211 0 chr9 74850660 74850755 -43011872 - MIR3 SINE MIR -47 161 47 779 251 113 9 chr9 74852004 74852330 -43010297 + MLT1J LTR MaLR 10 369 -142 2861 142 81 15 chr9 74852690 74853218 -43009409 - MER34B LTR ERV1 0 565 3 223 233 0 0 chr9 74853221 74853264 -43009363 + L2 LINE L2 3230 3272 0 384 256 42 78 chr9 74853336 74853454 -43009173 - MIR SINE MIR 0 262 152 213 39 0 0 chr9 74853454 74853480 -43009147 + (TTG)n Simple_repeat Simple_repeat 2 27 0 384 256 42 78 chr9 74853480 74853552 -43009075 - MIR SINE MIR -110 152 79 251 247 32 75 chr9 74853902 74853995 -43008632 - MIR SINE MIR -76 186 98 306 0 0 0 chr9 74855177 74855211 -43007416 + (TG)n Simple_repeat Simple_repeat 2 35 0 189 154 0 0 chr9 74855758 74855797 -43006830 + (CA)n Simple_repeat Simple_repeat 2 40 0 312 217 313 0 chr9 74856216 74856331 -43006296 - MER5A DNA MER1_type -6 183 33 847 319 72 18 chr9 74857340 74857729 -43004898 - MLT1K LTR MaLR -40 548 139 377 255 10 0 chr9 74857758 74857860 -43004767 - MLT1K LTR MaLR -341 247 145 315 278 10 0 chr9 74857831 74857928 -43004699 - MLT1K LTR MaLR -346 242 145 * 235 208 57 132 chr9 74857899 74858005 -43004622 - MLT1K LTR MaLR -346 242 145 * 400 206 20 10 chr9 74857976 74858078 -43004549 - MLT1K LTR MaLR -346 242 140 2231 89 7 33 chr9 74858355 74858659 -43003968 - AluSq SINE Alu -17 296 1 2050 151 43 3 chr9 74858684 74859035 -43003592 - MLT1A1 LTR MaLR 0 365 1 2255 104 3 7 chr9 74859176 74859474 -43003153 - AluSx SINE Alu -15 297 1 443 299 8 98 chr9 74859575 74859809 -43002818 - L2 LINE L2 -2 3311 3099 2056 127 0 29 chr9 74859831 74860138 -43002489 + AluSq SINE Alu 1 298 -15 1175 243 196 43 chr9 74860488 74861002 -43001625 - MLT1E LTR MaLR 0 593 1 1819 101 4 0 chr9 74861451 74861689 -43000938 - AluSx SINE Alu -73 239 1 255 61 0 0 chr9 74862162 74862195 -43000432 + (TCCC)n Simple_repeat Simple_repeat 4 36 0 2202 164 10 28 chr9 74862716 74863113 -42999514 - MLT1B LTR MaLR 0 390 1 669 199 54 6 chr9 74863423 74863589 -42999038 - MER20 DNA MER1_type 0 219 46 250 175 0 0 chr9 74863645 74863685 -42998942 + MIR SINE MIR 110 149 -113 2156 138 3 6 chr9 74863860 74864172 -42998455 - AluSx SINE Alu -1 311 1 244 274 0 0 chr9 74864225 74864287 -42998340 + L2 LINE L2 3252 3313 0 334 262 39 39 chr9 74864302 74864405 -42998222 + L2 LINE L2 3205 3307 -6 667 263 21 64 chr9 74865074 74865224 -42997403 - MIR SINE MIR -27 235 97 556 270 0 0 chr9 74865224 74865335 -42997292 - MER81 DNA DNA -1 113 3 667 263 21 64 chr9 74865335 74865420 -42997207 - MIR SINE MIR -165 97 10 1781 171 3 32 chr9 74865624 74865933 -42996694 + AluJo SINE Alu 1 300 -12 249 33 0 0 chr9 74866785 74866815 -42995812 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 300 186 0 128 chr9 74866835 74866883 -42995744 - MER5B DNA MER1_type -75 103 69 2358 84 3 3 chr9 74866883 74867180 -42995447 - AluSg SINE Alu -13 297 1 300 186 0 128 chr9 74867180 74867217 -42995410 - MER5B DNA MER1_type -109 69 29 1156 227 76 45 chr9 74867219 74867732 -42994895 + MER39 LTR ERV1 4 707 0 21 0 0 0 chr9 74867966 74867987 -42994640 + AT_rich Low_complexity Low_complexity 1 21 0 344 223 161 15 chr9 74868099 74868229 -42994398 - MARNA DNA Mariner -194 392 244 2307 92 3 0 chr9 74868250 74868542 -42994085 - AluY SINE Alu -16 295 3 2030 154 7 0 chr9 74868585 74868891 -42993736 + AluJo SINE Alu 3 310 -2 2287 112 0 0 chr9 74869081 74869386 -42993241 + AluY SINE Alu 1 305 -6 897 153 0 0 chr9 74869392 74869523 -42993104 + AluJb SINE Alu 87 217 -95 617 284 13 13 chr9 74869621 74869776 -42992851 - MIR3 SINE MIR -16 192 38 531 250 23 31 chr9 74871133 74871261 -42991366 + MIR SINE MIR 25 151 -111 192 356 67 22 chr9 74871443 74871533 -42991094 + L2 LINE L2 2269 2362 -952 882 176 128 0 chr9 74873903 74874091 -42988536 - MER20 DNA MER1_type -4 215 4 410 266 78 16 chr9 74874380 74874508 -42988119 - MIR SINE MIR -8 254 119 226 93 0 107 chr9 74875505 74875580 -42987047 + (TCCC)n Simple_repeat Simple_repeat 1 67 0 22 56 0 0 chr9 74876484 74876520 -42986107 + AT_rich Low_complexity Low_complexity 1 36 0 1971 157 0 0 chr9 74876799 74877086 -42985541 + AluJo SINE Alu 1 287 -25 2406 217 94 34 chr9 74877106 74877832 -42984795 + MER97a DNA MER1_type? 81 855 -39 1661 187 3 23 chr9 74877832 74878132 -42984495 + AluJb SINE Alu 1 294 -18 2406 217 94 34 chr9 74878132 74878162 -42984465 + MER97a DNA MER1_type? 855 882 -12 344 277 163 38 chr9 74878389 74878573 -42984054 - L2 LINE L2 0 3313 3107 754 204 120 120 chr9 74878719 74878816 -42983811 + MER58B DNA MER1_type 9 105 -2315 1641 148 68 14 chr9 74878816 74879094 -42983533 - AluJo SINE Alu -19 293 1 754 204 120 120 chr9 74879094 74879295 -42983332 + MER58B DNA MER1_type 104 307 -34 237 162 0 0 chr9 74879330 74879367 -42983260 + MER58B DNA MER1_type 305 341 0 578 241 30 0 chr9 74879369 74879502 -42983125 - L2 LINE L2 -644 2670 2534 1012 205 25 10 chr9 74879502 74879702 -42982925 + Tigger5 DNA MER2_type 1 203 -2120 256 119 0 0 chr9 74879710 74879752 -42982875 - Tigger5 DNA MER2_type -189 2134 2093 * 553 203 47 14 chr9 74879740 74879888 -42982739 - MER97a DNA MER1_type? -147 747 595 2251 186 28 40 chr9 74879892 74880391 -42982236 + Tigger5 DNA MER2_type 1831 2323 0 493 284 5 71 chr9 74880391 74880588 -42982039 - L2 LINE L2 -779 2535 2352 946 273 106 14 chr9 74880836 74881203 -42981424 - LTR16C LTR ERVL -5 486 86 2136 125 6 3 chr9 74882184 74882495 -42980132 + AluSx SINE Alu 1 312 0 510 284 76 58 chr9 74882654 74882929 -42979698 - L1M4 LINE L1 -747 5399 5120 242 286 68 30 chr9 74884602 74884735 -42977892 + L2 LINE L2 2668 2805 -509 301 196 0 155 chr9 74884972 74885069 -42977558 + L2 LINE L2 3222 3303 -10 451 241 153 31 chr9 74885764 74885992 -42976635 + MER112 DNA MER1_type 1 256 0 370 120 27 0 chr9 74886201 74886276 -42976351 + GA-rich Low_complexity Low_complexity 2 78 0 1609 159 0 79 chr9 74887041 74887356 -42975271 - AluJo SINE Alu -22 290 1 2462 90 0 6 chr9 74887859 74888170 -42974457 - AluSc SINE Alu 0 309 1 1152 282 34 46 chr9 74888301 74888797 -42973830 + LTR33 LTR ERVL 20 509 -12 2345 100 6 0 chr9 74889166 74889477 -42973150 + AluSp SINE Alu 1 313 0 1055 191 85 4 chr9 74890038 74890274 -42972353 + MIR SINE MIR 8 262 0 438 319 99 6 chr9 74890351 74890533 -42972094 + MIR SINE MIR 40 238 -24 2654 65 0 0 chr9 74890725 74891034 -42971593 + AluY SINE Alu 1 309 -2 280 313 52 130 chr9 74891144 74891451 -42971176 - L2 LINE L2 -20 3252 2970 279 348 67 0 chr9 74892866 74893001 -42969626 - MIR3 SINE MIR -62 146 3 314 313 20 27 chr9 74894825 74894972 -42967655 + L2 LINE L2 2908 3053 -219 757 244 35 68 chr9 74895099 74895194 -42967433 + MLT1J LTR MaLR 16 113 -398 2449 86 0 0 chr9 74895194 74895495 -42967132 + AluSc SINE Alu 1 301 -8 757 244 35 68 chr9 74895495 74895802 -42966825 + MLT1J LTR MaLR 113 459 -52 2248 100 10 0 chr9 74896059 74896358 -42966269 - AluSg SINE Alu 0 310 9 26 30 0 0 chr9 74896729 74896762 -42965865 + AT_rich Low_complexity Low_complexity 1 33 0 376 210 59 50 chr9 74896829 74896948 -42965679 + MER58B DNA MER1_type 168 287 -54 2501 127 24 93 chr9 74896950 74897455 -42965172 - LTR12 LTR ERV1 -244 470 1 284 172 35 0 chr9 74897460 74897518 -42965109 + MER58B DNA MER1_type 281 340 -1 22 0 0 0 chr9 74897941 74897963 -42964664 + GC_rich Low_complexity Low_complexity 1 22 0 274 306 140 25 chr9 74898526 74898683 -42963944 - MIR SINE MIR 0 262 88 610 269 121 31 chr9 74898830 74899220 -42963407 + L1ME4a LINE L1 5615 6039 -82 276 264 0 28 chr9 74899787 74899859 -42962768 + GA-rich Low_complexity Low_complexity 3 72 0 467 224 239 0 chr9 74899943 74900077 -42962550 + MER5A DNA MER1_type 23 188 -1 463 208 47 28 chr9 74900756 74900862 -42961765 + MER103 DNA DNA 2 109 -57 210 250 28 14 chr9 74901131 74901203 -42961424 + GA-rich Low_complexity Low_complexity 6 78 0 1383 288 94 11 chr9 74901635 74902156 -42960471 + MLT2E LTR ERVL 65 628 0 594 161 50 129 chr9 74903033 74903169 -42959458 + LTR37A LTR ERV1 198 343 -83 1373 98 5 0 chr9 74903169 74903353 -42959274 - L1PA16 LINE L1 -9 6157 5973 594 161 50 129 chr9 74903353 74903479 -42959148 + LTR37A LTR ERV1 343 397 -29 2278 89 0 0 chr9 74903479 74903770 -42958857 - AluSx SINE Alu -21 291 1 594 161 50 129 chr9 74903770 74903786 -42958841 + LTR37A LTR ERV1 397 413 -13 206 229 0 0 chr9 74904492 74904540 -42958087 + (CA)n Simple_repeat Simple_repeat 2 49 0 457 284 185 33 chr9 74904549 74904792 -42957835 + L2 LINE L2 2993 3272 0 510 301 83 5 chr9 74904939 74905155 -42957472 + L1MC/D LINE L1 5477 5709 -2099 2340 72 3 0 chr9 74906553 74906857 -42955770 + AluY SINE Alu 1 305 -6 263 319 73 11 chr9 74907565 74907756 -42954871 - MLT1L LTR MaLR -6 609 407 2673 123 5 3 chr9 74907777 74908152 -42954475 - MER48 LTR ERV1 0 387 12 313 285 65 75 chr9 74908165 74908351 -42954276 - MLT1L LTR MaLR -235 380 197 266 250 0 0 chr9 74908536 74908588 -42954039 + LTR30 LTR ERV1 1 52 -670 694 205 74 42 chr9 74908588 74908803 -42953824 + LTR12 LTR ERV1 53 274 -440 388 217 28 19 chr9 74908808 74908914 -42953713 + LTR30 LTR ERV1 546 652 -70 682 124 0 0 chr9 74908914 74909011 -42953616 + LTR12 LTR ERV1 617 713 -1 1226 121 116 0 chr9 74909348 74909538 -42953089 - MER30 DNA MER1_type 0 230 19 398 294 54 44 chr9 74910122 74910326 -42952301 + MLT1J LTR MaLR 10 215 -296 556 264 119 13 chr9 74910340 74910575 -42952052 - LTR16C LTR ERVL 0 491 232 430 305 100 31 chr9 74910824 74911083 -42951544 + MLT1J LTR MaLR 235 511 0 1277 278 56 12 chr9 74911345 74911776 -42950851 - MLT1J2 LTR MaLR 0 450 1 2026 115 34 3 chr9 74911798 74912093 -42950534 + AluSx SINE Alu 1 304 -8 2244 78 10 3 chr9 74912182 74912488 -42950139 + AluY SINE Alu 1 308 -3 325 247 0 11 chr9 74912516 74912604 -42950023 - Charlie2 DNA MER1_type -72 2790 2704 810 259 100 29 chr9 74912604 74913024 -42949603 + LTR16A LTR ERVL 1 450 0 21 36 0 0 chr9 74913071 74913099 -42949528 + AT_rich Low_complexity Low_complexity 1 28 0 598 269 157 0 chr9 74913270 74913493 -42949134 - Charlie2 DNA MER1_type -2540 322 65 860 159 0 0 chr9 74913742 74913880 -42948747 - FRAM SINE Alu -38 138 1 560 234 14 21 chr9 74914253 74914398 -42948229 - MLT1G1 LTR MaLR -10 585 442 1847 151 0 28 chr9 74915003 74915320 -42947307 + AluSx SINE Alu 1 308 -4 520 268 84 36 chr9 74916803 74917053 -42945574 + L2 LINE L2 3047 3308 -5 241 222 335 12 chr9 74917401 74917568 -42945059 - L2 LINE L2 -10 3303 3083 190 189 54 0 chr9 74917865 74917902 -42944725 - MIR SINE MIR -3 259 221 382 286 120 23 chr9 74917952 74918127 -42944500 + MIR SINE MIR 12 203 -59 294 95 0 0 chr9 74919126 74919168 -42943459 + (TG)n Simple_repeat Simple_repeat 1 42 0 252 324 73 64 chr9 74920300 74920504 -42942123 + L2 LINE L2 3059 3264 -8 320 219 16 0 chr9 74920991 74921055 -42941572 - MER5A DNA MER1_type -97 92 28 1082 150 0 10 chr9 74921057 74921357 -42941270 + (TGG)n Simple_repeat Simple_repeat 1 296 0 188 296 0 0 chr9 74921401 74921445 -42941182 - MER5A DNA MER1_type -141 48 5 1407 172 27 40 chr9 74921591 74921888 -42940739 + AluJo SINE Alu 1 293 -19 391 305 53 20 chr9 74921939 74922090 -42940537 + MER63B DNA MER1_type 17 172 -264 296 289 10 39 chr9 74922109 74922213 -42940414 + MIR SINE MIR 60 160 -102 2458 59 0 0 chr9 74922349 74922653 -42939974 + AluY SINE Alu 1 304 -7 240 265 48 0 chr9 74923119 74923202 -42939425 + L1ME LINE L1 5802 5888 -233 405 86 0 0 chr9 74923202 74923260 -42939367 + (CA)n Simple_repeat Simple_repeat 1 58 0 508 216 0 0 chr9 74923262 74923350 -42939277 - Tigger2 DNA MER2_type -4 2714 2627 197 33 33 0 chr9 74923500 74923530 -42939097 + (TTTTA)n Simple_repeat Simple_repeat 4 34 0 43884 29 22 1 chr9 74923530 74929533 -42933094 - L1HS LINE L1 -16 6139 7 211 379 11 11 chr9 74929548 74929635 -42932992 + L2 LINE L2 3116 3202 -70 279 314 72 42 chr9 74930076 74930312 -42932315 - MLT1K LTR MaLR -162 426 184 27 0 0 0 chr9 74930900 74930927 -42931700 + AT_rich Low_complexity Low_complexity 1 27 0 425 264 25 50 chr9 74931064 74931141 -42931486 - L2 LINE L2 -38 3234 3160 2527 106 11 21 chr9 74931141 74931520 -42931107 - THE1C LTR MaLR 0 375 1 425 264 25 50 chr9 74931520 74931563 -42931064 - L2 LINE L2 -112 3160 3117 811 194 48 21 chr9 74931826 74932012 -42930615 + AluJo SINE Alu 118 308 -4 1987 130 7 0 chr9 74932177 74932478 -42930149 + AluSx SINE Alu 2 304 -8 1019 244 103 12 chr9 74932637 74932957 -42929670 - MLT1I LTR MaLR 0 409 61 575 231 8 15 chr9 74933106 74933240 -42929387 + MLT1H1 LTR MaLR 44 176 -379 367 217 14 0 chr9 74933309 74933396 -42929231 + MLT1H1 LTR MaLR 195 268 -287 277 320 50 96 chr9 74934688 74934798 -42927829 - L2 LINE L2 -34 3238 3124 2329 60 13 7 chr9 74934798 74935098 -42927529 - AluSg SINE Alu -8 302 1 277 320 50 96 chr9 74935098 74935309 -42927318 - L2 LINE L2 -148 3124 2932 212 364 30 30 chr9 74935323 74935422 -42927205 - L2 LINE L2 -21 3251 3153 259 333 11 33 chr9 74935439 74935529 -42927098 - L2 LINE L2 -458 2856 2769 203 192 19 77 chr9 74936042 74936094 -42926533 - L2 LINE L2 -4 3309 3261 233 245 31 31 chr9 74936609 74936707 -42925920 + MLT1I LTR MaLR 21 118 -291 2238 77 3 7 chr9 74936823 74937120 -42925507 - AluSq SINE Alu -17 296 1 237 130 246 29 chr9 74937156 74937225 -42925402 + MLT1I LTR MaLR 320 403 -6 180 300 38 25 chr9 74937253 74937333 -42925294 - L2 LINE L2 -51 3221 3141 421 291 50 6 chr9 74937612 74937794 -42924833 + MER117 DNA MER1_type 5 194 -3 553 259 17 6 chr9 74937804 74937978 -42924649 + L1MD3 LINE L1 7796 7971 -24 225 0 0 0 chr9 74938245 74938270 -42924357 + (T)n Simple_repeat Simple_repeat 1 25 0 5895 113 6 7 chr9 74938270 74939115 -42923512 - L1PA15 LINE L1 0 6165 5320 2156 100 10 0 chr9 74939115 74939414 -42923213 - AluSp SINE Alu 0 313 12 5895 113 6 7 chr9 74939414 74939450 -42923177 - L1PA15 LINE L1 -845 5320 5285 235 376 10 10 chr9 74939451 74939653 -42922974 + L2 LINE L2 2772 2973 -341 2575 215 30 19 chr9 74940446 74940515 -42922112 + MER119 DNA MER1_type 1 68 -515 1535 173 0 83 chr9 74940515 74940839 -42921788 - AluSx SINE Alu -15 297 1 2575 215 30 19 chr9 74940839 74941346 -42921281 + MER119 DNA MER1_type 68 583 0 180 293 0 0 chr9 74942198 74942239 -42920388 - L2 LINE L2 -17 3255 3215 306 222 40 61 chr9 74942812 74942911 -42919716 - MLT1K LTR MaLR -28 560 464 3191 198 44 22 chr9 74943041 74943297 -42919330 - L1MA9 LINE L1 -1 6290 6041 1463 89 243 4 chr9 74943297 74943544 -42919083 - AluSg1 SINE Alu -3 306 1 3191 198 44 22 chr9 74943544 74944705 -42917922 - L1MA9 LINE L1 -250 6041 4774 619 280 82 49 chr9 74944705 74945034 -42917593 - MLT1K LTR MaLR -248 340 1 556 282 109 6 chr9 74945178 74945352 -42917275 + MER63A DNA MER1_type 10 201 -9 1320 122 56 0 chr9 74945582 74945779 -42916848 - LTR12 LTR ERV1 -130 584 377 291 255 31 20 chr9 74945780 74945878 -42916749 - LTR30 LTR ERV1 -80 642 544 5352 127 94 38 chr9 74945878 74946965 -42915662 - pTR5 LTR ERV1 -413 2025 743 7280 173 171 15 chr9 74948044 74949563 -42913064 + MER52A LTR ERV1 1 1755 0 411 286 23 8 chr9 74949617 74949750 -42912877 - MIR SINE MIR -75 187 53 1998 118 0 0 chr9 74949798 74950070 -42912557 - AluSx SINE Alu -4 308 37 236 238 40 124 chr9 74950405 74950607 -42912020 + L1P LINE L1 3607 3791 -2355 1649 227 26 21 chr9 74950614 74951001 -42911626 + MSTD LTR MaLR 1 389 -7 21 36 0 0 chr9 74952755 74952783 -42909844 + AT_rich Low_complexity Low_complexity 1 28 0 1039 185 63 108 chr9 74952924 74953275 -42909352 + MLT1A1 LTR MaLR 31 365 0 3457 125 25 0 chr9 74954647 74955159 -42907468 - L1PA16 LINE L1 -9 6157 5633 399 264 40 14 chr9 74955605 74955753 -42906874 + L1ME4a LINE L1 5966 6117 -4 596 306 78 26 chr9 74957478 74957864 -42904763 + LTR16A LTR ERVL 34 439 -11 1609 202 67 59 chr9 74959265 74959760 -42902867 + L1M4 LINE L1 2728 3226 -2920 335 232 176 8 chr9 74960891 74961016 -42901611 - L2 LINE L2 0 3313 3168 749 267 0 48 chr9 74961150 74961218 -42901409 + MER45 DNA AcHobo 1 71 -882 2306 78 13 39 chr9 74961218 74961527 -42901100 + AluSg SINE Alu 1 301 -9 749 267 0 48 chr9 74961527 74961645 -42900982 + MER45 DNA AcHobo 71 178 -775 416 258 11 0 chr9 74961756 74961849 -42900778 + MER45C DNA AcHobo 722 815 -138 513 139 0 74 chr9 74961849 74961957 -42900670 - LTR12 LTR ERV1 0 714 615 276 269 34 25 chr9 74961959 74962078 -42900549 - LTR30 LTR ERV1 -79 643 524 997 152 12 41 chr9 74962165 74962425 -42900202 - LTR12 LTR ERV1 -479 235 53 253 269 0 0 chr9 74962425 74962477 -42900150 - LTR30 LTR ERV1 -670 52 1 1828 162 7 7 chr9 74962480 74962764 -42899863 + AluJb SINE Alu 1 284 -28 493 164 262 8 chr9 74962776 74962898 -42899729 + MER45C DNA AcHobo 800 952 -1 335 241 88 36 chr9 74962902 74963039 -42899588 - L2 LINE L2 -311 3002 2859 406 315 80 33 chr9 74963470 74963832 -42898795 + L2 LINE L2 2871 3249 -23 1660 184 25 0 chr9 74963961 74964238 -42898389 - AluJb SINE Alu -15 297 14 1556 171 46 4 chr9 74964477 74964757 -42897870 + AluJb SINE Alu 1 292 -20 1345 224 146 48 chr9 74964894 74965405 -42897222 + MLT1F1 LTR MaLR 1 560 -7 281 225 11 0 chr9 74965813 74965902 -42896725 + CT-rich Low_complexity Low_complexity 3 92 0 247 241 268 9 chr9 74966110 74966222 -42896405 - MER5A DNA MER1_type 0 189 49 264 296 0 12 chr9 74966237 74966318 -42896309 + MIR3 SINE MIR 88 167 -41 183 349 24 0 chr9 74966959 74967042 -42895585 + L2 LINE L2 3188 3272 0 2244 120 7 0 chr9 74967576 74967884 -42894743 - AluSg SINE Alu 0 310 1 603 257 74 35 chr9 74968313 74968515 -42894112 + MLT1J LTR MaLR 1 210 -301 5573 217 20 27 chr9 74968528 74969957 -42892670 + L1MC1 LINE L1 3886 5304 -842 1283 156 0 70 chr9 74969957 74970201 -42892426 + AluJb SINE Alu 86 312 0 5311 147 52 41 chr9 74970208 74971225 -42891402 + L1MC1 LINE L1 5305 6332 -1 254 263 95 0 chr9 74971402 74971497 -42891130 + MLT1J LTR MaLR 408 511 0 1909 110 59 4 chr9 74972000 74972273 -42890354 - AluSx SINE Alu -24 288 1 600 241 134 104 chr9 74972287 74972637 -42889990 + MER114 LTR ERV 3 341 -307 2480 67 3 0 chr9 74972637 74972935 -42889692 + AluY SINE Alu 1 299 -12 2120 115 0 26 chr9 74972940 74973244 -42889383 + AluSx SINE Alu 1 296 -16 600 241 134 104 chr9 74973244 74973514 -42889113 + MER114 LTR ERV 344 648 0 3991 119 23 0 chr9 74974276 74974882 -42887745 + L1PA16 LINE L1 5546 6165 -1 25 51 0 0 chr9 74975761 74975800 -42886827 + AT_rich Low_complexity Low_complexity 1 39 0 197 306 149 16 chr9 74976213 74976334 -42886293 + L2 LINE L2 3136 3272 0 355 284 0 9 chr9 74977962 74978078 -42884549 + L1MD3 LINE L1 7794 7908 -87 22 35 0 0 chr9 74978099 74978128 -42884499 + AT_rich Low_complexity Low_complexity 1 29 0 284 232 113 87 chr9 74978161 74978346 -42884281 + MLT1J1 LTR MaLR 255 444 -2 31 76 0 0 chr9 74979348 74979414 -42883213 + AT_rich Low_complexity Low_complexity 1 66 0 290 337 244 7 chr9 74979822 74980252 -42882375 + L3 LINE CR1 191 722 -855 390 205 41 57 chr9 74980709 74980831 -42881796 + MER103 DNA DNA 2 121 -45 704 239 127 15 chr9 74980848 74981045 -42881582 + MER58A DNA MER1_type 6 224 0 1704 228 85 3 chr9 74981110 74981554 -42881073 + MLT2B1 LTR ERVL 1 554 0 823 236 157 25 chr9 74981555 74981835 -42880792 + ERVL-B1 LTR ERVL 2 318 -5446 346 325 8 0 chr9 74982048 74982174 -42880453 + L2 LINE L2 2629 2755 -559 432 346 55 58 chr9 74982718 74983047 -42879580 + L2 LINE L2 2945 3272 0 417 368 16 11 chr9 74983629 74983819 -42878808 - MIR3 SINE MIR -1 207 17 1497 203 122 41 chr9 74983863 74983940 -42878687 + MLT1D LTR MaLR 1 70 -435 2202 110 0 3 chr9 74983940 74984231 -42878396 + AluSc SINE Alu 1 290 -19 1497 203 122 41 chr9 74984231 74984620 -42878007 + MLT1D LTR MaLR 70 505 0 1101 189 46 0 chr9 74984620 74984816 -42877811 + MER58A DNA MER1_type 11 215 -9 261 291 39 0 chr9 74985262 74985389 -42877238 + MIR SINE MIR 103 234 -28 439 208 138 55 chr9 74985493 74985782 -42876845 - L1ME4a LINE L1 -1 6120 5808 230 385 60 30 chr9 74985817 74985983 -42876644 - L2 LINE L2 -5 3267 3097 230 385 60 30 chr9 74988674 74988840 -42873787 - L2 LINE L2 -5 3267 3097 1594 96 0 5 chr9 74990074 74990306 -42872321 - AluY SINE Alu 0 307 77 1982 252 65 27 chr9 74990368 74990932 -42871695 - L1P4 LINE L1 -661 5513 4912 195 42 0 0 chr9 74990932 74990956 -42871671 + (TA)n Simple_repeat Simple_repeat 2 25 0 1982 252 65 27 chr9 74990956 74991264 -42871363 - L1P4 LINE L1 -1262 4912 4617 1350 205 86 31 chr9 74991408 74991759 -42870868 + MLT1A2 LTR MaLR 1 370 -4 640 269 70 22 chr9 74991837 74992108 -42870519 + HAL1 LINE L1 10 293 -2214 1194 163 91 88 chr9 74992185 74992504 -42870123 - MER33 DNA MER1_type 0 324 5 535 277 98 24 chr9 74992719 74993095 -42869532 + HAL1 LINE L1 913 1316 -1191 259 233 0 0 chr9 74993084 74993144 -42869483 + HAL1 LINE L1 2448 2507 0 * 1173 154 0 0 chr9 74993967 74994136 -42868491 + AluJb SINE Alu 138 306 -6 316 341 50 22 chr9 74994215 74994397 -42868230 - MER5A DNA MER1_type 0 189 3 2149 137 121 0 chr9 74995456 74995836 -42866791 - MSTA LTR MaLR -2 426 1 2279 118 0 19 chr9 74996035 74996350 -42866277 - AluSc SINE Alu 0 309 1 471 236 127 6 chr9 74996526 74996683 -42865944 - MIR SINE MIR -9 253 78 583 255 26 57 chr9 74997448 74997640 -42864987 - MER91A DNA MER1_type -1 195 10 506 288 129 15 chr9 74997760 74998093 -42864534 + L2 LINE L2 1459 1829 -1485 944 208 22 35 chr9 74998522 74998753 -42863874 - Charlie8 DNA MER1_type -2152 265 38 373 258 73 53 chr9 74999848 74999999 -42862628 + MLT1J2 LTR MaLR 297 450 0 1840 173 0 30 chr9 75000711 75001011 -42861616 + AluJo SINE Alu 1 291 -21 2310 177 30 21 chr9 75001100 75001530 -42861097 - Tigger2a DNA MER2_type 0 434 1 217 222 83 28 chr9 75002308 75002380 -42860247 - MIR SINE MIR -109 153 78 3090 206 121 51 chr9 75004533 75005577 -42857050 - Charlie2a DNA MER1_type -44 2818 1669 1085 169 0 0 chr9 75005577 75005755 -42856872 - L1MB7 LINE L1 -19 6165 5988 3090 206 121 51 chr9 75005755 75005974 -42856653 - Charlie2a DNA MER1_type -1193 1669 1467 14303 117 30 19 chr9 75006048 75007270 -42855357 - Tigger1 DNA MER2_type -22 2396 1190 2358 96 0 3 chr9 75007270 75007571 -42855056 - AluSg SINE Alu -10 300 1 14303 117 30 19 chr9 75007571 75008474 -42854153 - Tigger1 DNA MER2_type -1228 1190 239 2115 130 7 0 chr9 75008474 75008773 -42853854 + AluSx SINE Alu 1 301 -11 14303 117 30 19 chr9 75008773 75008990 -42853637 - Tigger1 DNA MER2_type -2179 239 26 225 119 0 24 chr9 75008990 75009032 -42853595 - Tigger1 DNA MER2_type -2369 49 9 664 308 42 23 chr9 75009102 75009365 -42853262 - Charlie2b DNA MER1_type -2111 671 404 357 304 70 9 chr9 75009421 75009720 -42852907 + LTR16A LTR ERVL 46 428 -22 535 299 43 40 chr9 75009783 75010108 -42852519 - Charlie2b DNA MER1_type -2448 334 9 210 211 46 158 chr9 75010827 75010979 -42851648 - MIR SINE MIR -3 259 125 1410 257 136 24 chr9 75011385 75012248 -42850379 + L2 LINE L2 2210 3191 -122 3533 125 27 32 chr9 75012248 75012287 -42850340 - MER4A LTR ERV1 -2 598 560 2333 88 3 0 chr9 75012287 75012572 -42850055 + AluSx SINE Alu 12 297 -15 3533 125 27 32 chr9 75012572 75013133 -42849494 - MER4A LTR ERV1 -40 560 1 1410 257 136 24 chr9 75013133 75013244 -42849383 + L2 LINE L2 3191 3288 -25 1920 157 0 16 chr9 75014003 75014309 -42848318 - AluJo SINE Alu -11 301 1 662 165 75 52 chr9 75015112 75015324 -42847303 + L1MA8 LINE L1 6068 6284 -7 23 0 0 0 chr9 75015325 75015348 -42847279 + AT_rich Low_complexity Low_complexity 1 23 0 1897 119 71 0 chr9 75016715 75016984 -42845643 - AluSx SINE Alu -19 293 6 465 225 166 43 chr9 75017507 75017694 -42844933 + MLT1K LTR MaLR 376 585 -3 556 248 40 28 chr9 75017705 75017921 -42844706 - MIR3 SINE MIR -39 223 3 2204 102 10 10 chr9 75018999 75019302 -42843325 + AluSx SINE Alu 1 303 -9 2352 98 7 7 chr9 75019845 75020152 -42842475 + AluSq SINE Alu 1 307 -6 267 342 0 44 chr9 75020554 75020668 -42841959 + MIR SINE MIR 32 140 -122 1052 124 8 148 chr9 75021435 75021692 -42840935 + AluJo SINE Alu 85 305 -7 506 293 45 0 chr9 75022491 75022648 -42839979 + MER5A DNA MER1_type 1 164 -25 238 271 90 42 chr9 75022521 75022665 -42839962 - MER5A DNA MER1_type -23 166 16 * 208 233 0 0 chr9 75022947 75022990 -42839637 + MIR SINE MIR 168 210 -52 336 314 64 21 chr9 75024207 75024395 -42838232 - MIR SINE MIR -11 251 56 321 274 179 0 chr9 75024570 75024676 -42837951 + MER63 DNA MER1_type 1 751 -85 351 230 190 10 chr9 75024744 75024844 -42837783 + MER5B DNA MER1_type 61 178 0 622 287 116 15 chr9 75025119 75025364 -42837263 - LTR16C LTR ERVL -122 369 80 2976 177 10 17 chr9 75025364 75025560 -42837067 + L1PA16 LINE L1 5586 5782 -384 2495 71 0 0 chr9 75025560 75025857 -42836770 + AluY SINE Alu 1 297 -14 2976 177 10 17 chr9 75025857 75026243 -42836384 + L1PA16 LINE L1 5782 6164 -2 622 287 116 15 chr9 75026243 75026332 -42836295 - LTR16C LTR ERVL -411 80 1 414 266 84 4 chr9 75026822 75027059 -42835568 - LTR16B LTR ERVL 0 464 209 384 186 0 0 chr9 75027689 75027759 -42834868 + LTR16A1 LTR ERVL 385 454 -3 597 299 102 16 chr9 75027914 75028218 -42834409 - MER102b DNA MER1_type 0 341 12 2452 58 7 3 chr9 75028479 75028789 -42833838 - AluY SINE Alu 0 311 1 295 127 0 0 chr9 75029123 75029178 -42833449 - Alu SINE Alu -245 55 1 296 277 139 45 chr9 75029562 75029764 -42832863 - L2 LINE L2 -269 3044 2824 308 97 67 17 chr9 75029843 75029909 -42832718 + Alu SINE Alu 235 296 -5 545 209 92 33 chr9 75029914 75030067 -42832560 - L2 LINE L2 -842 2472 2311 24 0 0 0 chr9 75030138 75030162 -42832465 + AT_rich Low_complexity Low_complexity 1 24 0 529 291 45 49 chr9 75030171 75030418 -42832209 - L2 LINE L2 -964 2350 2105 307 288 90 14 chr9 75031143 75031384 -42831243 - MLT1I LTR MaLR -272 277 12 578 259 43 0 chr9 75032306 75032445 -42830182 + MIR SINE MIR 20 164 -98 907 165 0 0 chr9 75032677 75032810 -42829817 + FLAM_C SINE Alu 1 133 0 1989 294 44 17 chr9 75032889 75033552 -42829075 + MER115 DNA AcHobo 13 693 0 584 273 70 7 chr9 75033819 75034116 -42828511 + MLT1G1 LTR MaLR 2 270 -285 24 53 0 0 chr9 75034758 75034796 -42827831 + AT_rich Low_complexity Low_complexity 1 38 0 270 217 104 35 chr9 75034991 75035106 -42827521 - Charlie8 DNA MER1_type -2216 201 79 746 280 67 19 chr9 75035166 75035538 -42827089 + LTR16C LTR ERVL 69 458 -33 2393 80 0 0 chr9 75035603 75035904 -42826723 - AluY SINE Alu -10 301 1 243 341 28 84 chr9 75035905 75036084 -42826543 + MER91A DNA MER1_type 27 195 -1 289 287 87 27 chr9 75037088 75037238 -42825389 - L2 LINE L2 0 3313 3155 4020 187 49 32 chr9 75037242 75037922 -42824705 - L1MB7 LINE L1 -10 6174 5507 1877 181 3 0 chr9 75037922 75038225 -42824402 + AluJb SINE Alu 1 304 -8 4020 187 49 32 chr9 75038225 75038500 -42824127 - L1MB7 LINE L1 -677 5507 5195 224 0 65 0 chr9 75038500 75038531 -42824096 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 4020 187 49 32 chr9 75038531 75038579 -42824048 - L1MB7 LINE L1 -989 5195 5149 1201 232 93 47 chr9 75138812 75139304 -42723323 + LTR33 LTR ERVL 1 515 -6 233 230 103 0 chr9 75140095 75140182 -42722445 - MIR SINE MIR -57 151 56 189 121 0 0 chr9 75140856 75140889 -42721738 + (GA)n Simple_repeat Simple_repeat 1 33 0 222 279 32 26 chr9 75140898 75141052 -42721575 + GA-rich Low_complexity Low_complexity 6 160 0 * 357 192 51 45 chr9 75140985 75141141 -42721486 + (CAGAGA)n Simple_repeat Simple_repeat 5 161 0 2230 78 3 7 chr9 75141385 75141692 -42720935 - AluSx SINE Alu -6 306 1 213 121 0 0 chr9 75142301 75142334 -42720293 + (CA)n Simple_repeat Simple_repeat 1 33 0 203 386 35 14 chr9 75143206 75143351 -42719276 + L3b LINE CR1 1259 1406 -177 * 221 382 98 0 chr9 75143323 75143425 -42719202 - L2 LINE L2 -2 3270 3159 1834 147 0 17 chr9 75144119 75144419 -42718208 + AluJo SINE Alu 1 295 -17 611 240 63 46 chr9 75144462 75144637 -42717990 + MER5B DNA MER1_type 1 178 0 378 0 0 0 chr9 75145725 75145767 -42716860 + (CA)n Simple_repeat Simple_repeat 1 42 0 218 232 236 56 chr9 75146630 75146790 -42715837 + MIR SINE MIR 27 219 -43 2136 117 3 0 chr9 75147149 75147448 -42715179 - AluSx SINE Alu -12 300 1 406 236 7 21 chr9 75147593 75147708 -42714919 + MIR SINE MIR 113 224 -38 200 276 61 41 chr9 75149384 75149482 -42713145 - MIR SINE MIR -46 162 62 357 321 133 23 chr9 75150734 75150952 -42711675 - MIR SINE MIR -14 248 7 29 0 0 0 chr9 75151167 75151196 -42711431 + AT_rich Low_complexity Low_complexity 1 29 0 1790 165 0 3 chr9 75151286 75151583 -42711044 + AluSq SINE Alu 1 296 -17 1512 110 32 18 chr9 75151609 75151828 -42710799 + MER30 DNA MER1_type 8 229 -1 273 188 37 90 chr9 75151828 75151937 -42710690 + MIR3 SINE MIR 103 205 -3 322 298 182 52 chr9 75153513 75153842 -42708785 + L2 LINE L2 2942 3313 0 216 152 43 22 chr9 75154518 75154564 -42708063 - MIR SINE MIR -80 128 82 515 250 12 30 chr9 75156269 75156281 -42706346 + L2 LINE L2 3153 3164 -149 1450 161 22 77 chr9 75156281 75156398 -42706229 + AluJo SINE Alu 1 123 -189 1654 140 39 25 chr9 75156398 75156711 -42705916 + AluJo SINE Alu 1 312 0 1450 161 22 77 chr9 75156711 75156904 -42705723 + AluJo SINE Alu 123 294 -18 515 250 12 30 chr9 75156904 75157055 -42705572 + L2 LINE L2 3164 3313 0 228 299 90 22 chr9 75157206 75157340 -42705287 + MIR SINE MIR 49 191 -71 202 241 56 93 chr9 75158057 75158165 -42704462 + MIR3 SINE MIR 94 197 -11 198 364 0 0 chr9 75158720 75158797 -42703830 - MIR SINE MIR -6 256 180 213 39 0 0 chr9 75159568 75159594 -42703033 + (A)n Simple_repeat Simple_repeat 1 26 0 211 206 137 27 chr9 75160099 75160172 -42702455 + MIR3 SINE MIR 104 184 -24 305 203 25 13 chr9 75161024 75161103 -42701524 - MER116 DNA Mariner 0 80 1 195 301 194 0 chr9 75161953 75162046 -42700581 + MIR SINE MIR 31 141 -67 619 196 118 0 chr9 75162072 75162225 -42700402 - L1ME3A LINE L1 0 6170 6000 700 192 0 0 chr9 75162255 75162380 -42700247 + MLT1D LTR MaLR 381 505 0 237 225 28 42 chr9 75162388 75162459 -42700168 - MIR SINE MIR -181 81 12 269 373 56 20 chr9 75162985 75163237 -42699390 + MLT1L LTR MaLR 347 607 -8 591 218 64 77 chr9 75164370 75164590 -42698037 - Charlie8 DNA MER1_type -2032 385 169 357 24 0 0 chr9 75164745 75164787 -42697840 + (TG)n Simple_repeat Simple_repeat 2 43 0 328 268 10 10 chr9 75164823 75164920 -42697707 - Charlie8 DNA MER1_type -2244 173 77 801 193 33 0 chr9 75164963 75165113 -42697514 + MER5A DNA MER1_type 1 155 -34 415 159 45 11 chr9 75165131 75165219 -42697408 + MER53 DNA DNA 94 184 -5 825 285 31 0 chr9 75165254 75165497 -42697130 + MIR SINE MIR 12 261 -1 1790 88 39 8 chr9 75166658 75166961 -42695666 + AluSg SINE Alu 14 324 0 205 320 20 27 chr9 75168066 75168213 -42694414 + CT-rich Low_complexity Low_complexity 2 147 0 797 252 48 35 chr9 75168752 75168982 -42693645 + MIR SINE MIR 9 241 -21 185 235 0 0 chr9 75168953 75168987 -42693640 + L2 LINE L2 3217 3250 -22 * 1728 117 3 32 chr9 75169118 75169401 -42693226 - AluSg SINE Alu 0 310 36 551 118 0 0 chr9 75170229 75170305 -42692322 + AluS SINE Alu 2 77 -236 1910 68 20 0 chr9 75170305 75170557 -42692070 + AluSp SINE Alu 38 294 -19 676 296 125 21 chr9 75174455 75174735 -42687892 - L2 LINE L2 0 3313 3005 391 301 182 0 chr9 75174918 75175061 -42687566 - Charlie8 DNA MER1_type -2152 265 97 2115 86 4 0 chr9 75175212 75175511 -42687116 - AluSg SINE Alu 0 300 1 536 296 69 9 chr9 75175962 75176176 -42686451 + MIR SINE MIR 18 249 -13 1768 158 48 73 chr9 75177185 75177583 -42685044 - MLT1B LTR MaLR -2 388 1 193 206 0 0 chr9 75177948 75177982 -42684645 + L2 LINE L2 3276 3309 -4 731 309 225 17 chr9 75180102 75181161 -42681466 - L2 LINE L2 -371 2943 1665 218 327 10 0 chr9 75182028 75182129 -42680498 + L2 LINE L2 1988 2089 -1225 280 366 10 0 chr9 75182186 75182287 -42680340 - MIR SINE MIR -114 148 47 189 74 0 0 chr9 75182358 75182385 -42680242 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2255 119 0 0 chr9 75182698 75183008 -42679619 - AluSx SINE Alu -2 310 1 2417 61 0 10 chr9 75183959 75184272 -42678355 - AluY SINE Alu -1 310 1 185 0 40 0 chr9 75184484 75184509 -42678118 + (TCTCCC)n Simple_repeat Simple_repeat 4 29 0 1057 146 0 0 chr9 75184540 75184705 -42677922 - AluSg/x SINE Alu -11 299 135 2661 129 34 7 chr9 75185212 75185629 -42676998 + MSTA LTR MaLR 1 428 0 407 325 131 34 chr9 75185956 75186566 -42676061 + L2 LINE L2 2210 2878 -436 714 184 99 0 chr9 75186585 75186726 -42675901 - MLT1B LTR MaLR 0 390 236 4484 177 67 5 chr9 75186740 75187542 -42675085 - MER21B LTR ERV1 -11 852 1 920 182 44 44 chr9 75187566 75187791 -42674836 - MLT1B LTR MaLR -158 232 8 208 345 35 40 chr9 75187811 75188011 -42674616 + L2 LINE L2 2914 3112 -160 356 143 0 78 chr9 75188050 75188098 -42674529 + MER116 DNA Mariner 10 51 -29 2206 94 0 3 chr9 75188098 75188397 -42674230 - AluY SINE Alu -13 298 1 356 143 0 78 chr9 75188397 75188425 -42674202 + MER116 DNA Mariner 51 80 0 233 242 97 0 chr9 75188478 75188540 -42674087 + L2 LINE L2 3205 3272 0 2226 100 0 0 chr9 75189192 75189493 -42673134 + AluSg SINE Alu 1 301 -9 861 154 170 6 chr9 75189787 75189969 -42672658 + MER46B DNA MER2_type 1 87 -149 591 270 69 0 chr9 75189969 75190128 -42672499 + MER8 DNA MER2_type 10 179 -60 236 273 0 0 chr9 75190127 75190182 -42672445 + MER2 DNA MER2_type 290 344 -1 * 954 122 27 0 chr9 75190182 75190329 -42672298 + MER46B DNA MER2_type 85 235 -1 587 234 7 45 chr9 75190332 75190486 -42672141 + MIR SINE MIR 71 218 -44 1759 130 44 0 chr9 75190548 75190848 -42671779 + AluSx SINE Alu 1 312 0 1298 210 22 4 chr9 75192765 75193041 -42669586 + L1ME3A LINE L1 4108 4388 -1758 770 126 0 0 chr9 75193041 75193152 -42669475 + AluSg/x SINE Alu 195 305 -7 740 205 5 32 chr9 75193183 75193373 -42669254 + L1ME3A LINE L1 4984 5168 -978 1018 266 47 26 chr9 75193615 75193954 -42668673 + L1ME3A LINE L1 5822 6167 -3 313 286 121 20 chr9 75194379 75194616 -42668011 + MLT1L LTR MaLR 271 563 -5 451 258 127 50 chr9 75194625 75194846 -42667781 - MIR SINE MIR -2 260 23 357 278 26 52 chr9 75194848 75194963 -42667664 + MIR SINE MIR 30 141 -121 223 298 197 34 chr9 75195728 75195936 -42666691 + MIR SINE MIR 20 261 -1 399 246 32 32 chr9 75196027 75196153 -42666474 + L1MD3 LINE L1 7867 7992 -3 514 159 23 0 chr9 75197872 75197960 -42664667 - AluS SINE Alu -221 91 2 1703 163 67 3 chr9 75197995 75198338 -42664289 - L1MB7 LINE L1 -8 6176 5812 3854 201 41 18 chr9 75198349 75199505 -42663122 - L1MB3 LINE L1 -4 6179 4991 2233 72 0 0 chr9 75199505 75199782 -42662845 - AluY SINE Alu -18 293 17 3854 201 41 18 chr9 75199782 75200053 -42662574 - L1MB3 LINE L1 -1192 4991 4728 1513 220 58 94 chr9 75200070 75200584 -42662043 - HAL1b LINE L1 -15 1333 859 2232 81 7 3 chr9 75200584 75200881 -42661746 + AluSg SINE Alu 1 298 -12 1513 220 58 94 chr9 75200881 75201183 -42661444 - HAL1b LINE L1 -489 859 547 2513 52 0 0 chr9 75201185 75201494 -42661133 + AluY SINE Alu 1 309 -2 485 352 95 32 chr9 75201563 75201995 -42660632 + L3 LINE CR1 1011 1469 -108 307 319 199 7 chr9 75202002 75202143 -42660484 + L3 LINE CR1 1408 1575 -2 305 321 17 42 chr9 75203035 75203272 -42659355 + L1MC4a LINE L1 5695 5925 -1883 469 232 49 80 chr9 75203539 75203763 -42658864 - L1MB8 LINE L1 0 6178 5962 809 179 0 0 chr9 75203769 75203903 -42658724 + AluJb SINE Alu 174 307 -5 803 154 0 7 chr9 75203903 75204039 -42658588 - L1MB8 LINE L1 -216 5968 5834 1195 249 73 36 chr9 75204154 75204620 -42658007 - HAL1b LINE L1 -792 556 74 2439 67 0 38 chr9 75205855 75206168 -42656459 - AluY SINE Alu -10 301 1 2398 79 0 3 chr9 75207760 75208063 -42654564 - AluSg SINE Alu -8 302 1 23 0 0 0 chr9 75208149 75208172 -42654455 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr9 75209614 75209651 -42652976 + AT_rich Low_complexity Low_complexity 1 37 0 385 209 9 48 chr9 75209803 75209908 -42652719 + MER53 DNA DNA 8 108 -81 332 264 0 11 chr9 75210076 75210167 -42652460 + L1MC5 LINE L1 7715 7804 -157 210 292 14 28 chr9 75211302 75211374 -42651253 + MIR SINE MIR 3 73 -189 2010 121 24 0 chr9 75211374 75211663 -42650964 - AluSx SINE Alu -12 300 5 951 71 0 0 chr9 75211665 75211778 -42650849 - AluSq/x SINE Alu -175 137 25 711 287 35 4 chr9 75212013 75212243 -42650384 - MIR SINE MIR -21 241 5 209 281 49 0 chr9 75212355 75212437 -42650190 + L3 LINE CR1 1416 1501 -76 2427 61 20 3 chr9 75212537 75212833 -42649794 - AluY SINE Alu -10 301 1 1065 229 27 0 chr9 75213301 75213559 -42649068 - L1MA4 LINE L1 -8 6292 6028 203 281 47 0 chr9 75214903 75214967 -42647660 - L2 LINE L2 -1 3312 3246 1965 142 3 7 chr9 75215865 75216167 -42646460 + AluJb SINE Alu 1 301 -11 350 304 78 47 chr9 75218052 75218165 -42644462 + MIR SINE MIR 51 175 -87 1628 164 29 25 chr9 75218165 75218482 -42644145 + AluJb SINE Alu 1 318 0 350 304 78 47 chr9 75218482 75218558 -42644069 + MIR SINE MIR 175 247 -15 470 305 85 5 chr9 75219589 75219812 -42642815 - L3b LINE CR1 -241 1342 1102 2111 131 3 16 chr9 75219864 75220176 -42642451 - AluJb SINE Alu -4 308 1 227 264 0 0 chr9 75220807 75220860 -42641767 + (CA)n Simple_repeat Simple_repeat 1 53 0 735 120 0 0 chr9 75225775 75225883 -42636744 - AluJb SINE Alu -9 303 196 2003 106 11 0 chr9 75226215 75226520 -42636107 - AluSg SINE Alu 0 320 13 1375 160 56 83 chr9 75227174 75227245 -42635382 + Charlie5 DNA MER1_type 4 75 -2549 2345 75 17 3 chr9 75227245 75227538 -42635089 - AluY SINE Alu -14 297 1 1375 160 56 83 chr9 75227538 75227957 -42634670 + Charlie5 DNA MER1_type 75 2624 0 2224 149 3 26 chr9 75229236 75229625 -42633002 - MLT1B LTR MaLR -3 387 8 198 281 22 45 chr9 75231957 75232046 -42630581 + MER5A DNA MER1_type 36 122 -67 1688 130 20 125 chr9 75232108 75232327 -42630300 - AluYb8 SINE Alu -2 316 146 2263 91 0 3 chr9 75232327 75232613 -42630014 - AluY SINE Alu -26 285 1 1688 130 20 125 chr9 75232613 75232746 -42629881 - AluYb8 SINE Alu -172 146 1 2361 90 3 0 chr9 75232821 75233120 -42629507 - AluSg SINE Alu -10 300 1 278 25 0 25 chr9 75233813 75233853 -42628774 + (TTAA)n Simple_repeat Simple_repeat 4 42 0 2077 92 11 14 chr9 75233855 75234139 -42628488 - AluSx SINE Alu -29 283 1 286 260 42 10 chr9 75234631 75234727 -42627900 - MIR SINE MIR -62 146 48 2282 119 0 0 chr9 75235895 75236198 -42626429 + AluSq SINE Alu 1 303 -10 1824 159 0 3 chr9 75237258 75237548 -42625079 - AluJo SINE Alu -23 289 1 297 323 8 23 chr9 75237738 75237871 -42624756 - L2 LINE L2 -1 3312 3182 952 112 126 37 chr9 75237882 75238097 -42624530 + L1MC2 LINE L1 6086 6319 -25 191 301 73 41 chr9 75238239 75238362 -42624265 - L2 LINE L2 -553 2761 2635 249 159 0 0 chr9 75238612 75238656 -42623971 + (TG)n Simple_repeat Simple_repeat 1 44 0 2310 94 3 0 chr9 75242058 75242356 -42620271 - AluY SINE Alu -12 299 1 22 35 0 0 chr9 75244433 75244462 -42618165 + AT_rich Low_complexity Low_complexity 1 29 0 1995 80 76 24 chr9 75246368 75246657 -42615970 - AluY SINE Alu -7 304 1 1597 181 16 23 chr9 75246684 75246987 -42615640 + AluJo SINE Alu 2 302 -10 243 259 0 0 chr9 75247153 75247211 -42615416 - MIR SINE MIR -21 241 184 274 167 45 15 chr9 75247913 75247979 -42614648 + L2 LINE L2 3245 3312 -1 22 35 0 0 chr9 75248061 75248090 -42614537 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr9 75248313 75248334 -42614293 + AT_rich Low_complexity Low_complexity 1 21 0 348 292 144 35 chr9 75248770 75249109 -42613518 - HAL1b LINE L1 -696 652 277 190 301 53 44 chr9 75249111 75249224 -42613403 + MIR SINE MIR 99 212 -50 276 156 43 0 chr9 75249282 75249340 -42613287 + AluJb SINE Alu 86 135 -167 1664 185 7 23 chr9 75249342 75249650 -42612977 + AluJo SINE Alu 3 305 -7 1011 113 0 0 chr9 75251024 75251157 -42611470 - AluSq/x SINE Alu -179 133 1 2190 101 17 3 chr9 75251401 75251698 -42610929 - AluSx SINE Alu -11 301 1 1524 193 43 0 chr9 75251776 75252056 -42610571 - AluJo SINE Alu -20 292 1 46 19 0 0 chr9 75252133 75252186 -42610441 + AT_rich Low_complexity Low_complexity 1 53 0 1673 161 138 0 chr9 75252391 75252696 -42609931 - MER7A DNA MER2_type 0 346 2 242 122 24 0 chr9 75252892 75252933 -42609694 - MER3 DNA MER1_type -152 57 16 2466 204 34 9 chr9 75252933 75253493 -42609134 - L1ME1 LINE L1 -144 6022 5449 202 228 0 65 chr9 75254236 75254328 -42608299 + (CAG)n Simple_repeat Simple_repeat 1 86 0 332 261 146 8 chr9 75255186 75255316 -42607311 - MIR3 SINE MIR -19 189 42 22 35 0 0 chr9 75255761 75255790 -42606837 + AT_rich Low_complexity Low_complexity 1 29 0 2193 139 0 0 chr9 75255791 75256100 -42606527 + AluJb SINE Alu 1 309 -3 926 181 0 0 chr9 75256199 75256354 -42606273 - AluSg/x SINE Alu -14 298 144 2117 99 14 11 chr9 75257761 75258044 -42604583 - AluSc SINE Alu -25 284 1 233 321 45 18 chr9 75258385 75258497 -42604130 + MIR SINE MIR 27 141 -67 533 217 25 19 chr9 75260372 75260533 -42602094 - L1MA4 LINE L1 -1 6299 6138 2390 223 71 29 chr9 75261611 75262260 -42600367 - L1MB7 LINE L1 -9 6175 5500 1969 128 3 24 chr9 75262393 75262713 -42599914 + AluJo SINE Alu 5 318 0 1037 292 97 19 chr9 75263792 75264320 -42598307 + MER20B DNA MER1_type 135 703 -80 23 33 0 0 chr9 75269324 75269354 -42593273 + AT_rich Low_complexity Low_complexity 1 30 0 1833 64 36 4 chr9 75270387 75270636 -42591991 - L1PA6 LINE L1 0 6154 5898 2572 64 3 10 chr9 75270917 75271230 -42591397 - AluSp SINE Alu -2 311 1 262 133 0 33 chr9 75272062 75272122 -42590505 + (TTC)n Simple_repeat Simple_repeat 2 59 0 1865 157 0 20 chr9 75274696 75275001 -42587626 + AluJb SINE Alu 1 299 -13 288 0 0 0 chr9 75275148 75275180 -42587447 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 315 0 0 0 chr9 75276858 75276893 -42585734 + (TG)n Simple_repeat Simple_repeat 1 35 0 2395 67 0 0 chr9 75278035 75278373 -42584254 + AluY SINE Alu 1 338 0 1510 177 91 48 chr9 75278457 75278876 -42583751 - MLT1D LTR MaLR 0 505 69 673 162 0 70 chr9 75278996 75279138 -42583489 + FLAM_C SINE Alu 2 133 -10 285 167 44 67 chr9 75279223 75279313 -42583314 - L1MC4 LINE L1 -1340 6702 6615 21 0 0 0 chr9 75279548 75279569 -42583058 + AT_rich Low_complexity Low_complexity 1 21 0 1380 168 30 4 chr9 75279662 75279917 -42582710 - AluJb SINE Alu 0 306 46 188 304 43 43 chr9 75279961 75280076 -42582551 + MIR SINE MIR 97 211 -51 192 77 0 0 chr9 75284435 75284461 -42578166 + (CGGGG)n Simple_repeat Simple_repeat 5 30 0 2451 81 0 3 chr9 75287094 75287392 -42575235 - AluSc SINE Alu -12 297 1 2512 68 0 0 chr9 75287711 75288007 -42574620 - AluY SINE Alu -15 296 1 258 204 30 51 chr9 75289302 75289480 -42573147 - L1MC4 LINE L1 -335 5828 5775 1434 201 22 4 chr9 75289712 75290011 -42572616 - AluJo SINE Alu 0 312 9 730 213 97 9 chr9 75297482 75297698 -42564929 + MER33 DNA MER1_type 1 235 -89 2152 92 14 3 chr9 75300299 75300593 -42562034 - AluSg1 SINE Alu -12 297 1 4405 182 74 10 chr9 75303677 75304746 -42557881 - L1MB8 LINE L1 -1 6177 5016 292 315 16 62 chr9 75304922 75305162 -42557465 + L2 LINE L2 2995 3217 -55 215 321 18 0 chr9 75306584 75306640 -42555987 - L2 LINE L2 -3 3310 3254 766 182 28 111 chr9 75307114 75307367 -42555260 - MER46A DNA MER2_type 0 236 5 21 36 0 0 chr9 75307474 75307502 -42555125 + AT_rich Low_complexity Low_complexity 1 28 0 280 284 62 0 chr9 75307983 75308064 -42554563 - MER63A DNA MER1_type -7 203 118 419 258 25 42 chr9 75308141 75308261 -42554366 + MER58A DNA MER1_type 1 118 0 246 309 0 0 chr9 75308261 75308321 -42554306 + MER58A DNA MER1_type 164 223 -1 1154 176 112 12 chr9 75308393 75308643 -42553984 + AluJo SINE Alu 14 288 -24 228 218 0 18 chr9 75309412 75309467 -42553160 - MER112 DNA MER1_type -39 221 168 230 29 29 0 chr9 75309472 75309507 -42553120 + AluY SINE Alu 1 36 -263 278 83 0 0 chr9 75309543 75309579 -42553048 + Alu SINE Alu 1 36 -267 2196 104 3 7 chr9 75309579 75309888 -42552739 + AluSx SINE Alu 1 308 -4 367 315 72 44 chr9 75311317 75311605 -42551022 + L1ME3A LINE L1 5087 5391 -812 1294 186 58 25 chr9 75311605 75311899 -42550728 + AluJb SINE Alu 4 312 0 367 315 72 44 chr9 75311899 75311925 -42550702 + L1ME3A LINE L1 5391 5415 -788 427 234 138 21 chr9 75311961 75312149 -42550478 + LTR33 LTR ERVL 263 472 -49 407 309 147 0 chr9 75312168 75312359 -42550268 + L1ME3A LINE L1 5438 5656 -2152 2057 90 35 0 chr9 75316256 75316544 -42546083 + AluSg SINE Alu 7 304 -6 418 138 50 61 chr9 75319253 75319506 -42543121 + (CACAG)n Simple_repeat Simple_repeat 1 250 0 375 152 82 35 chr9 75319522 75319693 -42542934 + (CACAG)n Simple_repeat Simple_repeat 1 179 0 2399 75 3 0 chr9 75323207 75323514 -42539113 + AluY SINE Alu 1 308 -3 2143 105 16 0 chr9 75324207 75324512 -42538115 - AluSq SINE Alu -2 311 2 180 0 0 0 chr9 75324512 75324532 -42538095 + (TC)n Simple_repeat Simple_repeat 2 21 0 216 0 0 0 chr9 75328061 75328085 -42534542 + (TG)n Simple_repeat Simple_repeat 1 24 0 307 310 0 0 chr9 75329845 75329932 -42532695 + MIR SINE MIR 52 138 -124 265 305 21 21 chr9 75330021 75330116 -42532511 + CT-rich Low_complexity Low_complexity 3 97 0 1489 287 44 18 chr9 75330323 75330667 -42531960 - L1MB3 LINE L1 -4 6179 5814 2035 89 7 0 chr9 75330667 75330937 -42531690 - AluSg SINE Alu -11 299 28 1489 287 44 18 chr9 75330937 75331139 -42531488 - L1MB3 LINE L1 -369 5814 5619 307 336 58 4 chr9 75332322 75332563 -42530064 - L2 LINE L2 -808 2506 2253 737 182 77 0 chr9 75332966 75333136 -42529491 + MER20 DNA MER1_type 35 217 -2 244 277 12 12 chr9 75333595 75333678 -42528949 + LTR67 LTR ERVL 471 553 -4 695 221 19 62 chr9 75334954 75335162 -42527465 - MER69 DNA AcHobo -3 2523 2325 1743 174 3 0 chr9 75336643 75336931 -42525696 - AluSx SINE Alu -23 289 1 659 222 72 0 chr9 75340847 75341014 -42521613 - L1MA8 LINE L1 -279 6012 5834 395 200 223 0 chr9 75341307 75341437 -42521190 + L1ME3A LINE L1 6003 6161 -9 2330 239 41 10 chr9 75341508 75342559 -42520068 - L1MB4 LINE L1 0 6174 5061 396 325 38 6 chr9 75342766 75342926 -42519701 + MIR3 SINE MIR 19 183 -25 268 290 0 0 chr9 75343741 75343810 -42518817 + (CA)n Simple_repeat Simple_repeat 2 70 0 943 266 104 51 chr9 75344647 75344911 -42517716 - L1ME4a LINE L1 0 6121 5872 1731 156 10 30 chr9 75344911 75345213 -42517414 - AluJb SINE Alu -16 296 1 943 266 104 51 chr9 75345213 75345437 -42517190 - L1ME4a LINE L1 -249 5872 5607 1271 174 54 60 chr9 75349512 75349627 -42513000 + AluJo SINE Alu 1 115 -197 2374 61 7 0 chr9 75349627 75349922 -42512705 - AluY SINE Alu -14 297 1 1271 174 54 60 chr9 75349922 75350104 -42512523 + AluJo SINE Alu 115 296 -16 1720 151 11 7 chr9 75350957 75351236 -42511391 - AluJb SINE Alu -26 286 7 199 265 0 108 chr9 75353153 75353236 -42509391 - MIR3 SINE MIR -7 201 128 2145 78 20 3 chr9 75353724 75354019 -42508608 - AluSp SINE Alu -13 300 1 2061 133 0 0 chr9 75354019 75354319 -42508308 - AluSx SINE Alu -11 301 1 2968 223 73 38 chr9 75354419 75355353 -42507274 - L1ME2 LINE L1 0 6233 5333 2235 113 0 6 chr9 75355353 75355664 -42506963 - AluSc SINE Alu 0 309 1 2968 223 73 38 chr9 75355664 75355713 -42506914 - L1ME2 LINE L1 -900 5333 5287 1862 156 3 3 chr9 75355713 75356012 -42506615 - AluJb SINE Alu -17 295 1 2968 223 73 38 chr9 75356012 75356410 -42506217 - L1ME2 LINE L1 -946 5287 4816 1030 158 6 0 chr9 75356415 75356580 -42506047 - AluJb SINE Alu -12 300 135 1929 119 6 48 chr9 75356417 75356728 -42505899 - AluJo SINE Alu -14 298 1 275 199 26 73 chr9 75356738 75356889 -42505738 - L1ME2 LINE L1 -4079 2317 2174 * 300 297 70 59 chr9 75356862 75357148 -42505479 - L1ME2 LINE L1 -5732 473 185 495 270 184 33 chr9 75357386 75357778 -42504849 + L1ME2 LINE L1 5501 5951 -213 2507 64 0 3 chr9 75357859 75358157 -42504470 - AluY SINE Alu -13 298 2 1749 167 7 13 chr9 75359020 75359326 -42503301 + AluJo SINE Alu 1 304 -8 965 139 0 0 chr9 75359358 75359495 -42503132 + AluJb SINE Alu 1 137 -175 1096 184 0 5 chr9 75359940 75360130 -42502497 + AluJb SINE Alu 120 308 -4 182 37 37 0 chr9 75361648 75361675 -42500952 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 625 193 171 4 chr9 75363353 75363592 -42499035 - MER1B DNA MER1_type -4 335 57 1765 97 9 0 chr9 75364910 75365137 -42497490 - AluSc SINE Alu -16 293 65 216 0 0 0 chr9 75366300 75366324 -42496303 + (GA)n Simple_repeat Simple_repeat 1 24 0 521 269 204 0 chr9 75371892 75372059 -42490568 + MIR SINE MIR 47 247 -15 1636 136 70 42 chr9 75372109 75372395 -42490232 + AluJo SINE Alu 1 294 -18 1547 176 15 4 chr9 75372509 75372771 -42489856 - AluJo SINE Alu -34 278 14 269 363 91 13 chr9 75373538 75373847 -42488780 - L2 LINE L2 -890 2424 2092 199 282 39 58 chr9 75374093 75374249 -42488378 - MIR SINE MIR -74 188 36 312 48 0 0 chr9 75375822 75375864 -42486763 + (TA)n Simple_repeat Simple_repeat 2 43 0 225 0 0 0 chr9 75376477 75376502 -42486125 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2052 151 0 6 chr9 75377028 75377340 -42485287 + AluJb SINE Alu 1 310 -2 2488 94 0 0 chr9 75377986 75378293 -42484334 - AluSq SINE Alu -6 307 1 817 183 0 0 chr9 75378301 75378427 -42484200 - FLAM_A SINE Alu -5 128 3 407 168 274 0 chr9 75378447 75378542 -42484085 - 5S rRNA rRNA 0 121 1 209 313 0 38 chr9 75378543 75378623 -42484004 - MIR SINE MIR -8 254 178 2381 206 130 67 chr9 75378835 75379597 -42483030 - MER21B LTR ERV1 -52 811 2 501 158 77 135 chr9 75381868 75382128 -42480499 + L1MC5 LINE L1 7456 7700 -261 2000 159 0 3 chr9 75382205 75382513 -42480114 + AluJb SINE Alu 1 307 -5 1882 159 34 163 chr9 75382851 75383241 -42479386 + Charlie1 DNA MER1_type 373 646 -2115 2291 72 7 0 chr9 75383241 75383540 -42479087 + AluSp SINE Alu 6 306 0 1882 159 34 163 chr9 75383540 75383803 -42478824 + Charlie1 DNA MER1_type 646 942 -1819 * 6118 198 59 41 chr9 75383775 75385240 -42477387 + Charlie1 DNA MER1_type 1175 2612 -149 1552 93 28 0 chr9 75385240 75385454 -42477173 + L1PA14 LINE L1 5942 6161 0 6118 198 59 41 chr9 75385454 75385483 -42477144 + Charlie1 DNA MER1_type 2612 2639 -122 2343 98 0 0 chr9 75385483 75385779 -42476848 - AluSx SINE Alu -16 296 1 6118 198 59 41 chr9 75385779 75385842 -42476785 + Charlie1 DNA MER1_type 2639 2761 0 934 271 201 13 chr9 75386333 75386910 -42475717 + L2 LINE L2 2336 3063 -250 795 243 0 11 chr9 75386926 75387103 -42475524 - MER3 DNA MER1_type -28 181 7 435 320 27 23 chr9 75387116 75387335 -42475292 + L2 LINE L2 3092 3311 -2 1759 165 7 7 chr9 75387646 75387955 -42474672 + AluJb SINE Alu 1 309 -3 230 192 179 13 chr9 75388079 75388157 -42474470 - L1P LINE L1 -722 5429 5339 244 319 43 0 chr9 75388178 75388272 -42474355 - L2 LINE L2 0 3313 3216 438 287 167 6 chr9 75388356 75388600 -42474027 - L2 LINE L2 -274 3039 2757 5203 111 71 17 chr9 75388645 75388838 -42473789 - L1PB3 LINE L1 -2 6152 5971 1374 135 74 5 chr9 75388838 75389053 -42473574 + MER30 DNA MER1_type 1 230 0 5203 111 71 17 chr9 75389053 75389782 -42472845 - L1PB3 LINE L1 -183 5971 5185 2415 101 0 0 chr9 75389964 75390272 -42472355 + AluSx SINE Alu 1 308 -4 312 344 71 16 chr9 75390461 75390644 -42471983 + L1ME2 LINE L1 5755 5947 -217 1816 169 7 3 chr9 75390925 75391221 -42471406 + AluJb SINE Alu 2 298 -14 696 169 0 0 chr9 75391242 75391372 -42471255 + G-rich Low_complexity Low_complexity 4 133 0 1877 146 0 26 chr9 75391713 75392021 -42470606 - AluJb SINE Alu -7 305 6 221 226 0 19 chr9 75394783 75394836 -42467791 - MER5A DNA MER1_type -137 52 1 9801 52 5 0 chr9 75395034 75396967 -42465660 - L1PA6 LINE L1 -1 6153 4215 283 204 0 0 chr9 75397478 75397527 -42465100 - L1ME LINE L1 -579 5583 5535 12103 197 48 36 chr9 75397618 75397830 -42464797 - L1MB2 LINE L1 -2 6405 6197 2310 115 0 0 chr9 75397830 75398142 -42464485 - AluSx SINE Alu 0 312 1 12103 197 48 36 chr9 75398142 75399568 -42463059 - L1MB2 LINE L1 -210 6197 4790 2179 120 3 0 chr9 75399568 75399876 -42462751 + AluSp SINE Alu 1 309 -4 12103 197 48 36 chr9 75399876 75402602 -42460025 - L1MB2 LINE L1 -1617 4790 1974 378 212 0 15 chr9 75402627 75402693 -42459934 - MER2 DNA MER2_type 0 345 281 * 673 296 52 12 chr9 75402666 75402838 -42459789 - MER8 DNA MER2_type -60 179 1 3632 229 35 35 chr9 75402849 75404040 -42458587 - L1MB2 LINE L1 -4516 1797 777 618 254 57 98 chr9 75404365 75404418 -42458209 - L1MB2 LINE L1 -5468 835 781 4575 167 16 30 chr9 75404418 75404541 -42458086 + MER44D DNA MER2_type 2 125 -2362 1876 156 7 0 chr9 75404541 75404829 -42457798 - AluSx SINE Alu -22 290 1 4575 167 16 30 chr9 75404829 75405447 -42457180 + MER44D DNA MER2_type 125 605 0 618 254 57 98 chr9 75405447 75405834 -42456793 - L1MB2 LINE L1 -5522 781 413 302 296 42 21 chr9 75405844 75405986 -42456641 - L1ME LINE L1 -756 5390 5246 306 229 0 0 chr9 75406255 75406325 -42456302 - L1ME LINE L1 -1060 5086 5017 378 0 0 0 chr9 75406638 75406680 -42455947 + (TG)n Simple_repeat Simple_repeat 2 43 0 609 107 19 19 chr9 75408496 75408599 -42454028 - U13 snRNA snRNA -1 103 1 333 250 92 76 chr9 75408620 75408804 -42453823 + L1 LINE L1 4865 5051 -1095 307 274 130 48 chr9 75409026 75409234 -42453393 + L1ME4a LINE L1 5326 5550 -2258 235 301 187 12 chr9 75409235 75409401 -42453226 + MER91A DNA MER1_type 2 196 0 522 263 169 55 chr9 75409401 75409634 -42452993 + L1ME4a LINE L1 5561 5766 -355 1637 152 79 11 chr9 75409634 75409911 -42452716 + AluJb SINE Alu 1 296 -16 522 263 169 55 chr9 75409911 75410058 -42452569 + L1ME4a LINE L1 5766 5994 -127 1273 155 60 117 chr9 75410058 75410444 -42452183 - MLT1A1 LTR MaLR 0 365 2 522 263 169 55 chr9 75410444 75410477 -42452150 + L1ME4a LINE L1 5994 6022 -99 27 29 0 0 chr9 75410516 75410550 -42452077 + AT_rich Low_complexity Low_complexity 1 34 0 535 258 71 13 chr9 75412038 75412193 -42450434 - MIR SINE MIR -10 252 89 219 228 0 70 chr9 75412552 75412609 -42450018 - MIR SINE MIR -2 260 208 3321 146 70 8 chr9 75413051 75413711 -42448916 - Tigger3b DNA MER2_type 0 1231 531 1049 80 74 12 chr9 75413991 75414154 -42448473 - MER30 DNA MER1_type -57 173 1 251 264 91 66 chr9 75415251 75415372 -42447255 + MER5A DNA MER1_type 56 179 -10 2041 121 0 0 chr9 75415375 75415647 -42446980 - AluSx SINE Alu -40 272 1 243 224 119 30 chr9 75415759 75415893 -42446734 + L1MC5 LINE L1 7772 7917 -44 315 272 0 19 chr9 75416017 75416120 -42446507 + L1ME3A LINE L1 6068 6168 -2 2866 147 24 31 chr9 75416120 75416340 -42446287 - Tigger3b DNA MER2_type -2479 549 329 1401 177 70 43 chr9 75416340 75416639 -42445988 - AluJo SINE Alu -5 307 1 2866 147 24 31 chr9 75416639 75416970 -42445657 - Tigger3b DNA MER2_type -2699 329 2 388 192 13 13 chr9 75417034 75417112 -42445515 - Tigger7 DNA MER2_type -2 2585 2508 180 111 0 0 chr9 75417132 75417159 -42445468 + (CA)n Simple_repeat Simple_repeat 2 28 0 285 29 0 0 chr9 75417160 75417194 -42445433 + (TG)n Simple_repeat Simple_repeat 1 34 0 282 223 11 75 chr9 75417519 75417613 -42445014 - MIR3 SINE MIR -1 207 120 2354 79 0 0 chr9 75418239 75418529 -42444098 + AluY SINE Alu 1 290 -21 183 217 43 72 chr9 75418553 75418622 -42444005 - L2 LINE L2 0 3272 3206 32 75 0 0 chr9 75420121 75420188 -42442439 + AT_rich Low_complexity Low_complexity 1 67 0 442 192 0 29 chr9 75422012 75422116 -42440511 - FLAM_A SINE Alu -7 135 35 193 132 0 26 chr9 75422121 75422159 -42440468 - MER5A DNA MER1_type -98 91 55 546 202 163 6 chr9 75422274 75422452 -42440175 - MER20 DNA MER1_type -5 214 9 2072 92 67 0 chr9 75422791 75423073 -42439554 - AluSx SINE Alu -11 301 1 232 238 74 74 chr9 75423543 75423665 -42438962 + MER5A DNA MER1_type 66 187 -2 211 253 110 24 chr9 75423914 75424060 -42438567 + MIR SINE MIR 31 256 -6 1331 305 78 45 chr9 75425731 75426537 -42436090 + L2 LINE L2 1042 1874 -1440 243 283 0 0 chr9 75426833 75426893 -42435734 + L2 LINE L2 2175 2234 -1080 230 227 10 103 chr9 75427183 75427280 -42435347 + LTR52 LTR ERVL 70 157 -264 261 0 0 0 chr9 75427280 75427309 -42435318 + (CAGCC)n Simple_repeat Simple_repeat 3 31 0 932 166 49 0 chr9 75427328 75427491 -42435136 - AluJb SINE Alu -5 307 137 739 305 50 48 chr9 75427503 75427978 -42434649 + L2 LINE L2 2216 2691 -623 226 290 150 12 chr9 75428406 75428529 -42434098 + MIR SINE MIR 30 171 -62 311 294 217 34 chr9 75429002 75429436 -42433191 - L2 LINE L2 -17 3296 2785 276 54 0 0 chr9 75429659 75429696 -42432931 - MADE1 DNA Mariner -2 78 42 278 330 126 0 chr9 75430026 75430129 -42432498 + MER5B DNA MER1_type 63 178 0 278 257 30 0 chr9 75430192 75430293 -42432334 - L1MDa LINE L1 -4507 1708 1605 228 250 18 0 chr9 75430324 75430380 -42432247 - L1MDa LINE L1 -4827 1569 1513 3735 224 67 37 chr9 75430456 75430918 -42431709 - L1MC/D LINE L1 -743 5403 4957 2479 76 0 0 chr9 75430918 75431222 -42431405 + AluSc SINE Alu 1 304 -5 3735 224 67 37 chr9 75431222 75432409 -42430218 - L1MC/D LINE L1 -1189 4957 3841 1736 190 0 7 chr9 75433255 75433550 -42429077 + AluJo SINE Alu 1 293 -19 1034 267 121 28 chr9 75434347 75434753 -42427874 + MER20B DNA MER1_type 180 651 -132 1478 168 55 25 chr9 75434753 75435027 -42427600 - AluJo SINE Alu -30 282 1 1034 267 121 28 chr9 75435027 75435166 -42427461 + MER20B DNA MER1_type 651 776 -7 183 221 118 44 chr9 75435594 75435662 -42426965 + L2 LINE L2 3236 3308 -5 27 49 0 0 chr9 75435996 75436037 -42426590 + AT_rich Low_complexity Low_complexity 1 41 0 566 317 41 25 chr9 75436191 75436434 -42426193 + MIR SINE MIR 12 258 -4 385 261 131 51 chr9 75436512 75436688 -42425939 + MIR SINE MIR 13 202 -60 22 0 0 0 chr9 75437200 75437222 -42425405 + AT_rich Low_complexity Low_complexity 1 22 0 1678 119 94 45 chr9 75439111 75439397 -42423230 + AluJo SINE Alu 1 300 -12 1317 168 79 28 chr9 75439574 75439989 -42422638 - Charlie1 DNA MER1_type -57 2704 2 23 0 0 0 chr9 75443898 75443921 -42418706 + AT_rich Low_complexity Low_complexity 1 23 0 2469 87 3 0 chr9 75444085 75444397 -42418230 - AluSp SINE Alu 0 313 1 5455 156 49 21 chr9 75444451 75445560 -42417067 + L1MC1 LINE L1 5174 6327 -6 486 310 94 5 chr9 75445621 75445834 -42416793 + L2 LINE L2 2398 2629 -685 289 280 30 10 chr9 75445894 75445994 -42416633 + L1ME3A LINE L1 5638 5739 -431 254 275 49 21 chr9 75446014 75446156 -42416471 + L1ME3A LINE L1 5817 5962 -208 28 0 0 0 chr9 75446325 75446353 -42416274 + AT_rich Low_complexity Low_complexity 1 28 0 658 211 49 85 chr9 75446466 75446712 -42415915 - MIR SINE MIR -1 261 25 1848 279 116 57 chr9 75447067 75448939 -42413688 + L1ME1 LINE L1 75 2068 -4328 1145 203 62 3 chr9 75448939 75449245 -42413382 + MER33 DNA MER1_type 1 324 0 1848 279 116 57 chr9 75449245 75449320 -42413307 + L1ME1 LINE L1 2068 2137 -4259 2614 206 32 12 chr9 75449328 75450145 -42412482 + L1MB3 LINE L1 4662 5490 -693 1662 188 3 17 chr9 75450146 75450438 -42412189 + AluJo SINE Alu 1 288 -24 2988 150 47 5 chr9 75450452 75451011 -42411616 + L1MB3 LINE L1 5593 6174 -9 195 204 0 0 chr9 75451356 75451405 -42411222 + GA-rich Low_complexity Low_complexity 1 49 0 1005 262 121 26 chr9 75451476 75451976 -42410651 + MLT1G1 LTR MaLR 1 578 -12 3756 232 101 25 chr9 75451989 75452470 -42410157 + L1ME1 LINE L1 2184 2627 -3588 1799 241 75 16 chr9 75452470 75452960 -42409667 + LTR40a LTR ERVL 1 519 0 3756 232 101 25 chr9 75452960 75453204 -42409423 + L1ME1 LINE L1 2627 2851 -3364 2203 97 10 0 chr9 75453204 75453503 -42409124 + AluY SINE Alu 1 302 -9 3756 232 101 25 chr9 75453503 75454183 -42408444 + L1ME1 LINE L1 2851 3742 -2473 1773 177 3 0 chr9 75454183 75454471 -42408156 + AluJo SINE Alu 1 289 -23 3756 232 101 25 chr9 75454471 75454760 -42407867 + L1ME1 LINE L1 3742 4008 -2207 340 319 67 77 chr9 75454765 75455051 -42407576 + L1M2a LINE L1 -783 454 -5859 446 211 31 89 chr9 75455405 75455591 -42407036 + L1M2a LINE L1 777 972 -5334 7272 46 0 1 chr9 75455591 75456874 -42405753 + L1PA6 LINE L1 4866 6147 -7 198 0 0 0 chr9 75456878 75456900 -42405727 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 446 211 31 89 chr9 75456900 75456949 -42405678 + L1M2a LINE L1 975 1298 -5008 1974 78 89 11 chr9 75456950 75457232 -42405395 + AluSc SINE Alu 1 304 -5 3310 212 65 50 chr9 75457313 75458049 -42404578 + L1ME1 LINE L1 5027 5765 -470 746 227 0 0 chr9 75458049 75458181 -42404446 + FLAM_A SINE Alu 2 133 0 3310 212 65 50 chr9 75458181 75458654 -42403973 + L1ME1 LINE L1 5765 6230 -5 243 328 30 37 chr9 75458912 75459046 -42403581 - L1ME LINE L1 -307 5814 5682 2662 157 49 0 chr9 75459142 75459587 -42403040 - MLT1C LTR MaLR 0 467 1 2322 102 0 6 chr9 75459695 75460010 -42402617 + AluSp SINE Alu 1 313 0 203 271 106 24 chr9 75460375 75460460 -42402167 + MIR SINE MIR 122 213 -49 968 157 84 6 chr9 75460514 75460718 -42401909 - L1MB2 LINE L1 -85 6086 5894 234 261 185 0 chr9 75460736 75460801 -42401826 - MIR SINE MIR -151 111 35 185 94 31 0 chr9 75461737 75461769 -42400858 + A-rich Low_complexity Low_complexity 3 35 0 995 275 60 3 chr9 75462836 75463134 -42399493 + LTR16A LTR ERVL 136 450 0 218 224 155 0 chr9 75464115 75464173 -42398454 + L2 LINE L2 3245 3311 -2 1617 288 153 17 chr9 75464494 75465016 -42397611 - L2 LINE L2 -1 3312 2862 2348 112 0 0 chr9 75465016 75465319 -42397308 + AluSx SINE Alu 1 303 -9 1617 288 153 17 chr9 75465319 75465752 -42396875 - L2 LINE L2 -451 2862 2224 333 68 0 0 chr9 75465762 75465806 -42396821 + (CA)n Simple_repeat Simple_repeat 1 44 0 26 0 0 0 chr9 75465916 75465942 -42396685 + AT_rich Low_complexity Low_complexity 1 26 0 4301 67 313 6 chr9 75466438 75467070 -42395557 - LTR12 LTR ERV1 0 826 1 2082 122 52 9 chr9 75467336 75467665 -42394962 + MER61A LTR ERV1 1 343 0 2664 97 58 71 chr9 75467916 75468350 -42394277 - MSTA LTR MaLR 0 428 1 435 315 62 28 chr9 75468733 75469054 -42393573 - MLT1K LTR MaLR -122 466 135 1342 259 151 10 chr9 75469725 75470247 -42392380 + Charlie7 DNA MER1_type 12 607 -2005 448 276 61 48 chr9 75470400 75470631 -42391996 + L1M4 LINE L1 4558 4796 -1350 1148 235 118 46 chr9 75470631 75471112 -42391515 - MLT2B1 LTR ERVL 0 520 5 448 276 61 48 chr9 75471112 75471210 -42391417 + L1M4 LINE L1 4796 4891 -1255 444 269 60 30 chr9 75471360 75471561 -42391066 + L1M4 LINE L1 4901 5107 -1039 2381 101 3 0 chr9 75471563 75471871 -42390756 + AluSp SINE Alu 1 309 -4 228 254 93 51 chr9 75471876 75471994 -42390633 + L1ME3A LINE L1 6007 6129 -41 378 222 50 20 chr9 75472275 75472374 -42390253 + L2 LINE L2 3208 3309 -4 251 210 65 0 chr9 75472746 75472808 -42389819 + L2 LINE L2 3244 3309 -4 469 240 47 8 chr9 75473511 75473640 -42388987 + MER3 DNA MER1_type 37 123 -86 1577 191 44 36 chr9 75473642 75474029 -42388598 + MER3 DNA MER1_type 2235 2624 0 379 315 101 49 chr9 75474425 75474554 -42388073 + L2 LINE L2 2587 2708 -564 2140 116 23 3 chr9 75474554 75474856 -42387771 - AluSg SINE Alu 0 310 3 379 315 101 49 chr9 75474856 75475203 -42387424 + L2 LINE L2 2708 3088 -184 183 200 100 0 chr9 75477004 75477054 -42385573 + MIR SINE MIR 84 138 -124 2087 128 0 0 chr9 75477664 75477960 -42384667 - AluJb SINE Alu -16 296 1 207 100 0 0 chr9 75478480 75478510 -42384117 + (A)n Simple_repeat Simple_repeat 1 30 0 283 218 0 0 chr9 75479138 75479193 -42383434 + MLT1F1 LTR MaLR 501 555 -12 2350 70 0 33 chr9 75479503 75479802 -42382825 + AluY SINE Alu 1 289 -22 2428 100 0 0 chr9 75480398 75480709 -42381918 + AluY SINE Alu 1 311 0 195 341 34 11 chr9 75480925 75481013 -42381614 + MIR SINE MIR 149 238 -24 260 256 39 13 chr9 75481226 75481304 -42381323 - MER112 DNA MER1_type 0 260 181 1157 176 38 0 chr9 75481349 75481559 -42381068 - Tigger7 DNA MER2_type 0 2491 2274 2351 97 0 3 chr9 75481615 75481915 -42380712 + AluSq SINE Alu 1 299 -14 266 96 39 77 chr9 75481915 75481967 -42380660 - Tigger7 DNA MER2_type -211 2280 2231 219 139 0 0 chr9 75483201 75483237 -42379390 + (TG)n Simple_repeat Simple_repeat 2 37 0 33 85 0 0 chr9 75484646 75484728 -42377899 + AT_rich Low_complexity Low_complexity 1 82 0 22 0 0 0 chr9 75484944 75484966 -42377661 + AT_rich Low_complexity Low_complexity 1 22 0 391 301 107 70 chr9 75486623 75487092 -42375535 + L2 LINE L2 2442 2927 -387 2237 116 0 0 chr9 75487306 75487616 -42375011 - AluSx SINE Alu -2 310 1 588 204 82 143 chr9 75487749 75487980 -42374647 - MIR SINE MIR -28 234 18 2205 104 13 3 chr9 75487996 75488305 -42374322 + AluSx SINE Alu 1 312 0 2436 67 7 3 chr9 75488465 75488764 -42373863 + AluY SINE Alu 1 300 -11 1474 156 19 62 chr9 75488768 75489076 -42373551 + AluJo SINE Alu 1 295 -17 639 134 84 25 chr9 75489454 75489573 -42373054 - L1MCa LINE L1 -4828 1598 1473 451 133 27 0 chr9 75489578 75489653 -42372974 - L1MCa LINE L1 -5054 1372 1296 652 113 10 0 chr9 75489664 75489761 -42372866 - L1PB1 LINE L1 -1 6150 6053 1925 125 0 59 chr9 75489762 75490083 -42372544 - MER1B DNA MER1_type -37 302 1 32996 101 15 56 chr9 75490287 75496703 -42365924 + L1PA7 LINE L1 12 6154 0 3372 191 69 3 chr9 75498410 75499121 -42363506 + L1MB3 LINE L1 5425 6182 -1 393 190 95 58 chr9 75499246 75499383 -42363244 + MLT1L LTR MaLR 5 146 -469 371 198 49 0 chr9 75499399 75499480 -42363147 - Charlie1 DNA MER1_type -7 2754 2670 294 159 0 0 chr9 75499493 75499562 -42363065 + (TA)n Simple_repeat Simple_repeat 2 70 0 1164 201 34 4 chr9 75499581 75499815 -42362812 - Charlie1 DNA MER1_type -2519 242 2 257 208 42 28 chr9 75500136 75500208 -42362419 + MLT1L LTR MaLR 543 615 0 231 293 0 0 chr9 75500250 75500308 -42362319 + L2 LINE L2 3256 3313 0 21 57 0 0 chr9 75500807 75500842 -42361785 + AT_rich Low_complexity Low_complexity 1 35 0 202 321 72 90 chr9 75501776 75502053 -42360574 - L2 LINE L2 -14 3258 2987 675 249 31 16 chr9 75504195 75504388 -42358239 + ERVL LTR ERVL 4375 4570 -1194 1432 54 0 0 chr9 75505774 75505942 -42356685 - LTR5 LTR ERVK -3 966 799 1981 57 8 0 chr9 75505942 75506186 -42356441 - LTR5 LTR ERVK -723 246 1 947 197 27 0 chr9 75507039 75507227 -42355400 + MER20 DNA MER1_type 1 193 -26 420 212 95 95 chr9 75507253 75507656 -42354971 + MLT1D LTR MaLR 51 503 -2 2558 67 0 6 chr9 75507925 75508238 -42354389 - AluY SINE Alu 0 311 1 1649 142 11 18 chr9 75508453 75508728 -42353899 + AluSx SINE Alu 39 311 -1 5427 52 0 5 chr9 75510023 75510655 -42351972 - L1PA7 LINE L1 0 6154 5526 1737 148 0 62 chr9 75510983 75511321 -42351306 + AluJo SINE Alu 1 319 0 2391 113 30 3 chr9 75511341 75511676 -42350951 + L1MC1 LINE L1 5988 6331 -2 797 168 0 8 chr9 75511747 75511872 -42350755 + FLAM_A SINE Alu 10 133 -9 1676 130 32 18 chr9 75512738 75512822 -42349805 + L1MA6 LINE L1 6020 6101 -199 3535 114 34 2 chr9 75512822 75513320 -42349307 + MER75 DNA T2_type 1 514 0 1676 130 32 18 chr9 75513320 75513512 -42349115 + L1MA6 LINE L1 6101 6300 0 1203 266 60 7 chr9 75513566 75514072 -42348555 + L1M4c LINE L1 1378 2083 -4480 847 199 0 0 chr9 75514261 75514402 -42348225 + MER47B DNA MER2_type 1 141 -277 579 160 56 0 chr9 75514405 75514530 -42348097 + L1M4c LINE L1 2802 2933 -3449 604 195 61 20 chr9 75514535 75514736 -42347891 + MER47B DNA MER2_type 143 418 0 2451 233 43 90 chr9 75514812 75514919 -42347708 + L1MDa LINE L1 2343 2454 -4086 1563 150 28 49 chr9 75514919 75515033 -42347594 + AluJb SINE Alu 16 131 -181 1908 168 0 9 chr9 75515033 75515348 -42347279 + AluSx SINE Alu 1 312 0 1563 150 28 49 chr9 75515348 75515519 -42347108 + AluJb SINE Alu 131 295 -17 2451 233 43 90 chr9 75515519 75515666 -42346961 + L1MDa LINE L1 2454 2606 -3934 2315 117 0 0 chr9 75515666 75515973 -42346654 + AluSx SINE Alu 1 307 -5 2451 233 43 90 chr9 75515973 75516684 -42345943 + L1MDa LINE L1 2606 3299 -3241 4696 219 44 30 chr9 75516702 75518977 -42343650 + L1M1 LINE L1 2126 4451 -3114 21 36 0 0 chr9 75519041 75519069 -42343558 + AT_rich Low_complexity Low_complexity 1 28 0 938 149 12 18 chr9 75519079 75519247 -42343380 - FRAM SINE Alu -10 166 1 1060 219 61 8 chr9 75519823 75520070 -42342557 + MIR SINE MIR 2 261 -1 477 144 0 0 chr9 75520861 75520951 -42341676 + (CA)n Simple_repeat Simple_repeat 1 90 0 24 0 0 0 chr9 75521259 75521283 -42341344 + AT_rich Low_complexity Low_complexity 1 24 0 744 148 0 0 chr9 75521585 75521686 -42340941 + FRAM SINE Alu 58 158 -18 1501 252 102 19 chr9 75521689 75522265 -42340362 + L1ME4a LINE L1 5490 6113 -8 270 209 99 44 chr9 75522350 75522441 -42340186 + MLT1L LTR MaLR 221 316 -299 199 189 75 57 chr9 75522467 75522520 -42340107 - L2 LINE L2 0 3272 3219 23 0 0 0 chr9 75523001 75523024 -42339603 + AT_rich Low_complexity Low_complexity 1 23 0 269 274 211 74 chr9 75523024 75523199 -42339428 - MIR SINE MIR -1 261 63 26 50 0 0 chr9 75524102 75524142 -42338485 + AT_rich Low_complexity Low_complexity 1 40 0 1504 190 7 30 chr9 75524813 75525108 -42337519 + AluJo SINE Alu 1 288 -24 1939 141 0 28 chr9 75525668 75525959 -42336668 - AluJo SINE Alu -29 283 1 586 288 54 19 chr9 75526442 75526647 -42335980 - LTR16C LTR ERVL -17 474 263 249 204 11 45 chr9 75526656 75526744 -42335883 + L1MEc LINE L1 1413 1497 -4899 6086 141 110 25 chr9 75526758 75527666 -42334961 + L1M2 LINE L1 3669 4498 -1648 2252 113 0 0 chr9 75527666 75527968 -42334659 + AluSx SINE Alu 1 302 -10 234 0 0 0 chr9 75527968 75527994 -42334633 + (TA)n Simple_repeat Simple_repeat 2 27 0 6086 141 110 25 chr9 75527994 75528305 -42334322 + L1M2 LINE L1 4497 4993 -1153 215 262 0 0 chr9 75528329 75528390 -42334237 + (CGG)n Simple_repeat Simple_repeat 3 63 0 21 0 0 0 chr9 75528477 75528498 -42334129 + GC_rich Low_complexity Low_complexity 1 21 0 1806 140 65 51 chr9 75531025 75531345 -42331282 + L1M2 LINE L1 4980 5307 -876 446 32 48 0 chr9 75531345 75531407 -42331220 + (CAAAA)n Simple_repeat Simple_repeat 1 65 0 1806 140 65 51 chr9 75531407 75531543 -42331084 + L1M2 LINE L1 5307 5440 -743 1449 147 20 8 chr9 75531543 75531788 -42330839 + AluJo SINE Alu 54 301 -11 1620 224 11 29 chr9 75531788 75532167 -42330460 + L1MA10 LINE L1 5962 6333 -1 22 0 0 0 chr9 75532443 75532465 -42330162 + AT_rich Low_complexity Low_complexity 1 22 0 194 305 40 80 chr9 75533051 75533202 -42329425 - L2 LINE L2 -195 3077 2933 180 152 0 0 chr9 75533401 75533434 -42329193 + CT-rich Low_complexity Low_complexity 4 36 0 1018 336 88 19 chr9 75533933 75534558 -42328069 - L2 LINE L2 -508 2806 2139 1828 159 0 0 chr9 75535587 75535864 -42326763 + AluJb SINE Alu 9 285 -27 1468 80 10 20 chr9 75536453 75536652 -42325975 - AluSg/x SINE Alu -12 298 102 279 0 0 0 chr9 75537176 75537207 -42325420 + (CA)n Simple_repeat Simple_repeat 2 32 0 245 306 28 0 chr9 75537240 75537348 -42325279 + L1MC4a LINE L1 5820 5930 -1878 1653 130 89 27 chr9 75537415 75537707 -42324920 - AluJb SINE Alu -2 310 1 2370 73 0 16 chr9 75537796 75538110 -42324517 + AluY SINE Alu 1 309 -2 295 301 53 38 chr9 75538310 75538443 -42324184 + MIR SINE MIR 51 185 -77 882 221 5 20 chr9 75539088 75539283 -42323344 + MER3 DNA MER1_type 18 209 0 1182 194 113 62 chr9 75539466 75539837 -42322790 - MLT1B LTR MaLR 0 390 1 997 220 59 18 chr9 75539893 75540326 -42322301 + HAL1 LINE L1 1284 1837 -670 21 0 0 0 chr9 75540440 75540461 -42322166 + AT_rich Low_complexity Low_complexity 1 21 0 2047 128 3 16 chr9 75540464 75540776 -42321851 + AluSx SINE Alu 1 308 -4 1701 147 7 43 chr9 75542867 75543166 -42319461 - AluJb SINE Alu -5 307 20 277 59 0 0 chr9 75543720 75543754 -42318873 + tRNA-Cys-TGC tRNA tRNA 4 37 -38 688 184 21 13 chr9 75543826 75544035 -42318592 - MSTD LTR MaLR 0 396 145 21 36 0 0 chr9 75544201 75544229 -42318398 + AT_rich Low_complexity Low_complexity 1 28 0 891 136 0 131 chr9 75544243 75544341 -42318286 - AluJb SINE Alu -10 302 239 1587 131 29 12 chr9 75544341 75544586 -42318041 - AluSx SINE Alu -63 249 1 891 136 0 131 chr9 75544586 75544678 -42317949 - AluJb SINE Alu -73 239 137 898 181 6 25 chr9 75544860 75545020 -42317607 + FRAM SINE Alu 3 159 -7 237 234 0 0 chr9 75545648 75545695 -42316932 - MLT1L LTR MaLR 0 615 569 367 251 209 61 chr9 75545773 75546036 -42316591 - MLT1J1 LTR MaLR -96 342 12 1677 176 13 13 chr9 75546081 75546382 -42316245 + AluJo SINE Alu 1 301 -11 260 330 45 17 chr9 75546611 75546787 -42315840 - MLT1L LTR MaLR -408 207 27 2347 68 34 0 chr9 75546963 75547256 -42315371 + AluY SINE Alu 1 303 -8 569 235 101 0 chr9 75547556 75547675 -42314952 - FLAM_A SINE Alu -2 131 1 324 0 0 0 chr9 75547710 75547746 -42314881 + (TG)n Simple_repeat Simple_repeat 1 36 0 1606 205 30 111 chr9 75548286 75548370 -42314257 - LTR41 LTR ERVL -6 767 678 1478 175 42 14 chr9 75548370 75548656 -42313971 - AluJb SINE Alu -18 294 1 1606 205 30 111 chr9 75548656 75549146 -42313481 - LTR41 LTR ERVL -95 678 240 3255 208 80 101 chr9 75549464 75550310 -42312317 + L1M4 LINE L1 3477 4340 -1806 449 65 16 0 chr9 75550310 75550372 -42312255 + MER41A LTR ERV1 400 462 -92 2473 64 0 3 chr9 75550372 75550670 -42311957 + AluSg SINE Alu 1 297 -13 3255 208 80 101 chr9 75550670 75551115 -42311512 + L1M4 LINE L1 4338 4801 -1345 1668 172 7 0 chr9 75551233 75551524 -42311103 - AluJo SINE Alu -19 293 1 242 220 0 59 chr9 75553238 75553356 -42309271 + C-rich Low_complexity Low_complexity 4 114 0 2260 74 10 7 chr9 75554333 75554629 -42307998 + AluSc SINE Alu 1 297 -12 2045 88 70 0 chr9 75554666 75554938 -42307689 + AluSx SINE Alu 1 291 -21 2000 151 29 12 chr9 75555272 75555617 -42307010 - L1PB4 LINE L1 -1 6155 5805 225 83 0 0 chr9 75556234 75556270 -42306357 + (TG)n Simple_repeat Simple_repeat 1 36 0 787 199 25 12 chr9 75556271 75556432 -42306195 - FRAM SINE Alu -2 164 2 1168 121 0 29 chr9 75556762 75556935 -42305692 - AluSg/x SINE Alu -5 307 140 309 353 0 0 chr9 75557004 75557123 -42305504 - MIR SINE MIR -33 229 111 874 229 87 100 chr9 75558102 75558573 -42304054 - MER39 LTR ERV1 0 707 243 372 269 107 74 chr9 75558983 75559292 -42303335 + MLT1J LTR MaLR 36 354 -157 2109 137 3 10 chr9 75559292 75559605 -42303022 + AluSp SINE Alu 1 311 -2 1906 118 158 78 chr9 75559682 75560056 -42302571 - MER4A LTR ERV1 0 664 261 650 131 0 10 chr9 75560056 75560155 -42302472 - MER4A LTR ERV1 -566 98 1 15760 104 50 16 chr9 75560156 75562828 -42299799 - MER4A-int LTR ERV1 0 6598 3837 3419 147 97 20 chr9 75562827 75563051 -42299576 - MER4A-int LTR ERV1 -2917 3681 3476 * 2132 110 7 3 chr9 75563051 75563342 -42299285 + AluSg SINE Alu 1 292 -18 3419 147 97 20 chr9 75563342 75563995 -42298632 - MER4A-int LTR ERV1 -3122 3476 2737 1378 142 71 0 chr9 75563995 75564235 -42298392 + LTR8 LTR ERV1 1 257 -434 3819 86 65 32 chr9 75564235 75564304 -42298323 - MER4A-int LTR ERV1 -4103 2495 2430 2198 107 17 0 chr9 75564304 75564595 -42298032 + AluSx SINE Alu 1 296 -16 3819 86 65 32 chr9 75564595 75565033 -42297594 - MER4A-int LTR ERV1 -4168 2430 1956 2344 119 0 0 chr9 75565033 75565345 -42297282 - AluSx SINE Alu 0 312 1 3819 86 65 32 chr9 75565345 75565546 -42297081 - MER4A-int LTR ERV1 -4642 1956 1763 258 56 0 0 chr9 75565563 75565599 -42297028 + (CA)n Simple_repeat Simple_repeat 2 37 0 3887 122 20 36 chr9 75565599 75565689 -42296938 - MER4A-int LTR ERV1 -5614 1144 1054 2393 74 0 3 chr9 75565689 75565987 -42296640 - AluY SINE Alu -14 297 1 3887 122 20 36 chr9 75565987 75566811 -42295816 - MER4A-int LTR ERV1 -5704 1054 189 1213 248 68 11 chr9 75566810 75567161 -42295466 - MER4A-int LTR ERV1 -4107 2224 1854 * 2267 110 240 65 chr9 75567310 75567884 -42294743 - MER4A-int LTR ERV1 -5923 675 1 1616 112 3 56 chr9 75567887 75568164 -42294463 - MER4A LTR ERV1 0 664 350 1925 139 13 19 chr9 75568164 75568474 -42294153 - AluSq SINE Alu -5 308 1 1616 112 3 56 chr9 75568474 75568552 -42294075 - MER4A LTR ERV1 -314 350 269 419 202 0 12 chr9 75568556 75568640 -42293987 - MER4A LTR ERV1 -567 97 15 548 167 0 49 chr9 75568640 75568742 -42293885 - LTR12 LTR ERV1 -138 576 480 262 255 31 20 chr9 75568743 75568841 -42293786 - LTR30 LTR ERV1 -80 642 544 1300 138 4 53 chr9 75568963 75569209 -42293418 - LTR12 LTR ERV1 -480 234 1 311 244 12 23 chr9 75569220 75569306 -42293321 + MLT1J LTR MaLR 415 499 -12 351 273 0 0 chr9 75570270 75570347 -42292280 - MIR SINE MIR -6 256 180 2428 90 0 0 chr9 75570453 75570765 -42291862 + AluSq SINE Alu 1 312 -1 2227 116 3 0 chr9 75570840 75571143 -42291484 + AluSg SINE Alu 1 304 -6 186 125 0 0 chr9 75571255 75571279 -42291348 + (G)n Simple_repeat Simple_repeat 1 24 0 217 226 0 19 chr9 75572196 75572249 -42290378 - MER5A DNA MER1_type -137 52 1 9154 52 5 0 chr9 75572447 75574380 -42288247 - L1PA6 LINE L1 -1 6153 4215 259 204 0 0 chr9 75574891 75574940 -42287687 - L1ME LINE L1 -579 5583 5535 10711 199 48 35 chr9 75575031 75575243 -42287384 - L1MB2 LINE L1 -2 6405 6197 2306 116 0 0 chr9 75575243 75575554 -42287073 - AluSx SINE Alu -1 311 1 10711 199 48 35 chr9 75575554 75576980 -42285647 - L1MB2 LINE L1 -210 6197 4790 2174 123 3 0 chr9 75576980 75577288 -42285339 + AluSp SINE Alu 1 309 -4 10711 199 48 35 chr9 75577288 75580014 -42282613 - L1MB2 LINE L1 -1617 4790 1974 352 212 0 15 chr9 75580039 75580105 -42282522 - MER2 DNA MER2_type 0 345 281 * 614 296 52 12 chr9 75580078 75580250 -42282377 - MER8 DNA MER2_type -60 179 1 3225 228 30 35 chr9 75580272 75581452 -42281175 - L1MB2 LINE L1 -4516 1797 799 493 291 47 67 chr9 75581794 75581830 -42280797 - L1M3de LINE L1 -5213 678 643 4237 167 16 30 chr9 75581830 75581953 -42280674 + MER44D DNA MER2_type 2 125 -2362 1887 156 7 0 chr9 75581953 75582241 -42280386 - AluSx SINE Alu -22 290 1 4237 167 16 30 chr9 75582241 75582859 -42279768 + MER44D DNA MER2_type 125 605 0 493 291 47 67 chr9 75582859 75583246 -42279381 - L1M3de LINE L1 -5248 643 1 311 296 42 21 chr9 75583256 75583398 -42279229 - L1M4 LINE L1 -756 5390 5246 269 212 0 0 chr9 75583667 75583733 -42278894 - L1M4 LINE L1 -1060 5086 5021 396 0 0 0 chr9 75584050 75584094 -42278533 + (TG)n Simple_repeat Simple_repeat 2 45 0 609 107 19 19 chr9 75585910 75586013 -42276614 - U13 snRNA snRNA -1 103 1 333 250 92 76 chr9 75586034 75586218 -42276409 + L1 LINE L1 4865 5051 -1095 307 274 130 48 chr9 75586440 75586648 -42275979 + L1ME4a LINE L1 5326 5550 -2258 235 301 187 12 chr9 75586649 75586815 -42275812 + MER91A DNA MER1_type 2 196 0 531 263 169 55 chr9 75586815 75587048 -42275579 + L1ME4a LINE L1 5561 5766 -355 1637 152 79 11 chr9 75587048 75587325 -42275302 + AluJb SINE Alu 1 296 -16 531 263 169 55 chr9 75587325 75587472 -42275155 + L1ME4a LINE L1 5766 5994 -127 1222 156 62 117 chr9 75587472 75587857 -42274770 - MLT1A1 LTR MaLR 0 365 2 531 263 169 55 chr9 75587857 75587890 -42274737 + L1ME4a LINE L1 5994 6022 -99 27 29 0 0 chr9 75587929 75587963 -42274664 + AT_rich Low_complexity Low_complexity 1 34 0 535 258 71 13 chr9 75589452 75589607 -42273020 - MIR SINE MIR -10 252 89 219 228 0 70 chr9 75589966 75590023 -42272604 - MIR SINE MIR -2 260 208 3321 146 70 8 chr9 75590465 75591125 -42271502 - Tigger3b DNA MER2_type 0 1231 531 1049 80 74 12 chr9 75591405 75591568 -42271059 - MER30 DNA MER1_type -57 173 1 251 264 91 66 chr9 75592665 75592786 -42269841 + MER5A DNA MER1_type 56 179 -10 2041 121 0 0 chr9 75592789 75593061 -42269566 - AluSx SINE Alu -40 272 1 243 224 119 30 chr9 75593173 75593307 -42269320 + L1MC5 LINE L1 7772 7917 -44 315 272 0 19 chr9 75593431 75593534 -42269093 + L1ME3A LINE L1 6068 6168 -2 2837 150 24 31 chr9 75593534 75593754 -42268873 - Tigger3b DNA MER2_type -2479 549 329 1401 177 70 43 chr9 75593754 75594053 -42268574 - AluJo SINE Alu -5 307 1 2837 150 24 31 chr9 75594053 75594384 -42268243 - Tigger3b DNA MER2_type -2699 329 2 388 192 13 13 chr9 75594448 75594526 -42268101 - Tigger7 DNA MER2_type -2 2489 2412 180 111 0 0 chr9 75594546 75594573 -42268054 + (CA)n Simple_repeat Simple_repeat 2 28 0 321 26 0 0 chr9 75594574 75594612 -42268015 + (TG)n Simple_repeat Simple_repeat 1 38 0 282 223 11 75 chr9 75594937 75595031 -42267596 - MIR3 SINE MIR -1 207 120 2586 58 0 7 chr9 75595657 75595966 -42266661 + AluY SINE Alu 1 307 -4 373 257 0 0 chr9 75596239 75596340 -42266287 - MLT1D LTR MaLR -2 503 403 266 198 36 149 chr9 75596420 75596642 -42265985 - MLT1D LTR MaLR -258 247 51 870 197 27 0 chr9 75596668 75596856 -42265771 - MER20 DNA MER1_type -26 193 1 1988 57 8 0 chr9 75597709 75597953 -42264674 + LTR5 LTR ERVK 1 246 -723 1427 54 0 0 chr9 75597953 75598121 -42264506 + LTR5 LTR ERVK 799 966 -3 600 249 31 16 chr9 75599507 75599700 -42262927 - ERVL LTR ERVL -1194 4570 4375 203 321 72 90 chr9 75601842 75602119 -42260508 + L2 LINE L2 2987 3258 -14 21 57 0 0 chr9 75603053 75603088 -42259539 + AT_rich Low_complexity Low_complexity 1 35 0 235 293 0 0 chr9 75603587 75603645 -42258982 - L2 LINE L2 0 3313 3256 254 178 0 0 chr9 75603687 75603732 -42258895 - MLT1L LTR MaLR 0 615 571 1062 204 23 0 chr9 75604080 75604301 -42258326 + Charlie1 DNA MER1_type 2 227 -2534 321 206 0 0 chr9 75604333 75604425 -42258202 + (TA)n Simple_repeat Simple_repeat 2 93 0 342 200 13 0 chr9 75604425 75604500 -42258127 + Charlie1 DNA MER1_type 2679 2754 -7 337 219 88 51 chr9 75604516 75604653 -42257974 - MLT1L LTR MaLR -469 146 5 3031 191 69 3 chr9 75604778 75605489 -42257138 - L1MB3 LINE L1 -1 6182 5425 22833 88 17 15 chr9 75607196 75613618 -42249009 - L1PA7 LINE L1 0 6469 4 306 325 71 26 chr9 75613638 75613792 -42248835 - L1ME3 LINE L1 0 6162 6002 1965 125 0 59 chr9 75613816 75614137 -42248490 + MER1B DNA MER1_type 1 302 -37 629 113 10 0 chr9 75614138 75614235 -42248392 + L1PB1 LINE L1 6053 6150 -1 442 133 27 0 chr9 75614246 75614321 -42248306 + L1MCa LINE L1 1296 1372 -5054 629 134 84 25 chr9 75614326 75614445 -42248182 + L1MCa LINE L1 1473 1598 -4828 1369 156 19 62 chr9 75614823 75615131 -42247496 - AluJo SINE Alu -17 295 1 2324 67 7 3 chr9 75615135 75615434 -42247193 - AluY SINE Alu -11 300 1 2093 104 13 3 chr9 75615594 75615903 -42246724 - AluSx SINE Alu 0 312 1 272 206 27 110 chr9 75615919 75615992 -42246635 + MIR SINE MIR 18 84 -178 1866 138 28 43 chr9 75616137 75616528 -42246099 + L1M2 LINE L1 4175 4559 -1587 2012 97 17 3 chr9 75616543 75616833 -42245794 + AluSx SINE Alu 1 294 -18 577 194 0 0 chr9 75616833 75616941 -42245686 + L1M2 LINE L1 5555 5662 -638 424 298 62 54 chr9 75616943 75617185 -42245442 - MIR SINE MIR -14 248 5 1773 127 11 11 chr9 75617299 75617575 -42245052 - AluSx SINE Alu -36 276 1 458 205 124 95 chr9 75617975 75618321 -42244306 - HAL1 LINE L1 -11 2496 2141 342 67 0 0 chr9 75618323 75618368 -42244259 + (TCCC)n Simple_repeat Simple_repeat 3 47 0 1573 167 52 0 chr9 75618368 75618656 -42243971 - AluJo SINE Alu -9 303 1 828 100 200 7 chr9 75618657 75618797 -42243830 - AluSc SINE Alu -8 301 135 2224 87 3 0 chr9 75619913 75620213 -42242414 - AluSx SINE Alu -10 302 2 1911 81 0 64 chr9 75621048 75621344 -42241283 - AluSx SINE Alu -18 294 18 564 239 64 60 chr9 75621461 75621679 -42240948 + L2 LINE L2 3076 3294 -19 447 234 22 71 chr9 75621683 75621796 -42240831 - HAL1 LINE L1 -1298 1209 1111 1519 156 23 33 chr9 75621796 75622097 -42240530 - AluJb SINE Alu -14 298 1 447 234 22 71 chr9 75622097 75622209 -42240418 - HAL1 LINE L1 -1396 1111 995 704 285 107 82 chr9 75622215 75623147 -42239480 - HAL1 LINE L1 -1550 957 2 1285 111 0 0 chr9 75623799 75624018 -42238609 - AluSg/x SINE Alu 0 348 130 216 0 0 0 chr9 75624018 75624042 -42238585 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1996 79 0 59 chr9 75624042 75624332 -42238295 - AluSx SINE Alu -28 284 12 180 0 0 0 chr9 75624421 75624441 -42238186 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1460 184 40 4 chr9 75624444 75624716 -42237911 - AluJo SINE Alu -30 282 1 263 93 23 0 chr9 75624931 75624974 -42237653 + (TC)n Simple_repeat Simple_repeat 1 44 0 1822 94 4 0 chr9 75624981 75625226 -42237401 - AluSp SINE Alu -67 246 1 1259 148 26 66 chr9 75625545 75625717 -42236910 + L1MB7 LINE L1 5107 5263 -883 2164 96 10 0 chr9 75625717 75626010 -42236617 - AluSx SINE Alu -16 296 1 1259 148 26 66 chr9 75626010 75626140 -42236487 + L1MB7 LINE L1 5263 5397 -749 2764 161 76 2 chr9 75626247 75626775 -42235852 + L1MB7 LINE L1 5617 6183 -1 240 165 83 150 chr9 75626822 75626850 -42235777 - L1MC5 LINE L1 -386 7575 7547 2173 100 0 3 chr9 75626850 75627150 -42235477 + AluSx SINE Alu 1 299 -13 240 165 83 150 chr9 75627150 75627254 -42235373 - L1MC5 LINE L1 -414 7547 7452 847 268 77 59 chr9 75627539 75627878 -42234749 - L3 LINE CR1 -482 1095 751 684 195 0 8 chr9 75627881 75628004 -42234623 - FLAM_C SINE Alu -20 123 2 361 322 68 23 chr9 75628089 75628266 -42234361 - L3 LINE CR1 -976 601 417 2255 68 24 0 chr9 75628357 75628650 -42233977 + AluY SINE Alu 3 302 -9 1928 103 39 7 chr9 75628946 75629228 -42233399 + AluSg SINE Alu 1 291 -19 1008 216 41 2 chr9 75631099 75631452 -42231175 - MLT1D LTR MaLR -85 420 1 949 274 100 3 chr9 75632027 75632337 -42230290 + MER102b DNA MER1_type 1 340 -1 347 273 364 0 chr9 75632503 75632635 -42229992 + MER5A DNA MER1_type 10 189 0 7890 179 52 72 chr9 75632714 75634503 -42228124 + MER52A LTR ERV1 1 1755 0 1720 173 16 19 chr9 75634712 75635035 -42227592 - MLT1A1 LTR MaLR -43 322 1 2130 73 0 10 chr9 75635181 75635469 -42227158 + AluY SINE Alu 27 311 0 774 238 0 6 chr9 75635476 75635640 -42226987 - AluJo SINE Alu -30 282 120 374 169 0 0 chr9 75635647 75635718 -42226909 - L1MA8 LINE L1 -4 6287 6217 2475 40 0 0 chr9 75635718 75636018 -42226609 + AluY SINE Alu 1 300 -11 760 154 21 0 chr9 75636031 75636174 -42226453 + L1MB4 LINE L1 5296 5441 -733 920 180 6 6 chr9 75636174 75636346 -42226281 + AluJb SINE Alu 137 308 -4 1856 179 66 3 chr9 75636369 75636732 -42225895 + L1MB4 LINE L1 5428 5813 -367 5070 158 14 37 chr9 75636732 75637667 -42224960 + MER49 LTR ERV1 1 913 -10 2128 128 0 0 chr9 75637668 75637980 -42224647 + AluSx SINE Alu 1 312 0 1498 178 100 9 chr9 75638001 75638332 -42224295 + L1MB4 LINE L1 5814 6174 -6 388 286 42 24 chr9 75639062 75639230 -42223397 + LTR16A1 LTR ERVL 287 457 0 243 326 43 36 chr9 75639599 75639737 -42222890 - MIR SINE MIR -57 205 67 3749 184 80 38 chr9 75639764 75640098 -42222529 - MER21B LTR ERV1 -3 860 542 1773 140 0 53 chr9 75640098 75640419 -42222208 - AluSx SINE Alu -8 304 1 3749 184 80 38 chr9 75640419 75640909 -42221718 - MER21B LTR ERV1 -321 542 1 2181 90 0 17 chr9 75641161 75641325 -42221302 - AluSg SINE Alu -16 294 136 2379 74 0 3 chr9 75641325 75641637 -42220990 - AluY SINE Alu 0 311 1 2181 90 0 17 chr9 75641637 75641771 -42220856 - AluSg SINE Alu -174 136 1 1158 170 47 0 chr9 75641895 75642107 -42220520 - AluJb SINE Alu -5 307 86 461 255 3 40 chr9 75642114 75642282 -42220345 - L1MB3 LINE L1 -332 5851 5695 1627 211 66 50 chr9 75642416 75642913 -42219714 - MLT1D LTR MaLR 0 505 1 2325 82 3 0 chr9 75642970 75643275 -42219352 - AluSg SINE Alu -4 306 1 352 227 124 81 chr9 75643289 75643474 -42219153 + L1MEd LINE L1 817 1009 -5110 989 175 11 5 chr9 75643487 75643676 -42218951 + AluJb SINE Alu 119 308 -4 1412 141 50 50 chr9 75643900 75644199 -42218428 + AluJb SINE Alu 14 312 0 2254 90 0 3 chr9 75644269 75644569 -42218058 + AluSq SINE Alu 1 299 -14 317 297 40 7 chr9 75644569 75644717 -42217910 + HAL1 LINE L1 1514 1666 -841 29 60 0 0 chr9 75646250 75646300 -42216327 + AT_rich Low_complexity Low_complexity 1 50 0 23 0 0 0 chr9 75647005 75647028 -42215599 + AT_rich Low_complexity Low_complexity 1 23 0 230 103 0 0 chr9 75647290 75647319 -42215308 - Tigger5 DNA MER2_type 0 2323 2295 181 184 40 79 chr9 75647820 75647896 -42214731 + MER5A DNA MER1_type 3 75 -114 * 368 219 236 8 chr9 75647862 75647985 -42214642 - MER5A DNA MER1_type -30 159 9 829 153 23 0 chr9 75648079 75648210 -42214417 + AluSq/x SINE Alu 2 135 -178 1927 132 0 0 chr9 75648210 75648511 -42214116 + AluSx SINE Alu 1 301 0 2479 53 0 0 chr9 75648910 75649214 -42213413 + AluY SINE Alu 1 304 -7 266 146 55 0 chr9 75649238 75649293 -42213334 - MLT1L LTR MaLR -536 79 22 984 229 75 0 chr9 75649293 75649520 -42213107 + MLT1D LTR MaLR 1 244 -261 397 221 132 37 chr9 75649564 75649700 -42212927 + MLT1D LTR MaLR 357 505 0 430 136 0 25 chr9 75650125 75650206 -42212421 - MER53 DNA DNA 0 189 111 1394 219 169 16 chr9 75650212 75650645 -42211982 - MLT1D LTR MaLR -6 499 1 648 136 25 25 chr9 75650645 75650760 -42211867 - MER53 DNA DNA -74 115 1 2325 69 0 0 chr9 75651367 75651657 -42210970 - AluSc SINE Alu -19 290 1 767 217 32 42 chr9 75651773 75651990 -42210637 + LTR37B LTR ERV1 1 215 -253 209 191 24 0 chr9 75652110 75652152 -42210475 + CT-rich Low_complexity Low_complexity 2 44 0 680 239 16 60 chr9 75652152 75652336 -42210291 - AluJo/FRAM SINE Alu 0 312 137 1573 141 0 4 chr9 75652336 75652578 -42210049 - AluJo SINE Alu -5 307 67 505 239 15 0 chr9 75652578 75652708 -42209919 + LTR37B LTR ERV1 333 464 -4 1991 89 17 24 chr9 75652845 75653138 -42209489 - AluSx SINE Alu -21 291 1 571 309 68 59 chr9 75653291 75653731 -42208896 + MLT1K LTR MaLR 145 588 0 187 300 33 0 chr9 75653812 75653872 -42208755 + L2 LINE L2 3195 3256 -16 180 241 0 121 chr9 75654516 75654599 -42208028 + L3 LINE CR1 1298 1370 -207 1145 136 0 0 chr9 75655408 75655584 -42207043 - AluSg/x SINE Alu -5 305 130 2271 46 0 7 chr9 75656028 75656336 -42206291 + AluY SINE Alu 1 306 0 2283 74 0 3 chr9 75656748 75657047 -42205580 - AluSg SINE Alu -7 303 6 1824 166 3 3 chr9 75657127 75657429 -42205198 - AluJb SINE Alu -7 305 4 783 252 131 36 chr9 75657441 75657824 -42204803 - L1ME1 LINE L1 0 6178 5734 1777 182 33 20 chr9 75657824 75658200 -42204427 + MLT2B1 LTR ERVL 1 451 -64 205 194 0 0 chr9 75658251 75658287 -42204340 + (TCTA)n Simple_repeat Simple_repeat 3 38 0 294 164 0 20 chr9 75658327 75658384 -42204243 + MLT2C2 LTR ERVL 416 464 0 3082 206 66 33 chr9 75658384 75659595 -42203032 - L1ME1 LINE L1 -428 5738 4485 1518 178 44 7 chr9 75659595 75659893 -42202734 - AluJo SINE Alu -1 311 3 1334 196 7 31 chr9 75659897 75660188 -42202439 - AluJo SINE Alu -16 296 13 1864 152 0 17 chr9 75660201 75660498 -42202129 - AluSx SINE Alu -20 292 1 1449 202 101 76 chr9 75661131 75661208 -42201419 + MLT1F LTR MaLR 14 88 -479 2193 87 0 0 chr9 75661208 75661495 -42201132 - AluSc SINE Alu -22 287 1 2086 139 0 28 chr9 75661498 75661815 -42200812 - AluSx SINE Alu -4 308 1 1449 202 101 76 chr9 75661815 75662250 -42200377 + MLT1F LTR MaLR 89 566 -1 334 257 14 0 chr9 75662749 75662819 -42199808 - L2 LINE L2 0 3272 3202 289 253 40 0 chr9 75663064 75663139 -42199488 - L2 LINE L2 0 3272 3195 324 333 89 0 chr9 75663231 75663354 -42199273 + L2 LINE L2 3138 3271 -1 2348 92 0 0 chr9 75663692 75663986 -42198641 - AluSg SINE Alu -16 294 1 272 359 66 5 chr9 75665277 75665475 -42197152 + LTR67 LTR ERVL 345 554 -3 1523 207 5 63 chr9 75665580 75665650 -42196977 - MLT1A1 LTR MaLR -1 364 292 2527 71 0 0 chr9 75665650 75665961 -42196666 + AluY SINE Alu 1 311 0 1523 207 5 63 chr9 75665961 75666272 -42196355 - MLT1A1 LTR MaLR -73 292 5 205 321 25 49 chr9 75666312 75666393 -42196234 - L2 LINE L2 0 3313 3235 495 261 44 28 chr9 75666562 75666742 -42195885 + MER5A DNA MER1_type 7 189 0 3531 154 128 112 chr9 75667382 75667667 -42194960 - L1MC3 LINE L1 -21 8158 7879 1620 136 0 0 chr9 75667667 75667895 -42194732 - MER30 DNA MER1_type 0 230 3 3531 154 128 112 chr9 75667895 75668088 -42194539 - L1MC3 LINE L1 -300 7879 7691 1991 138 0 16 chr9 75668088 75668393 -42194234 - AluSx SINE Alu -12 300 1 3531 154 128 112 chr9 75668393 75668471 -42194156 - L1MC3 LINE L1 -488 7691 7616 228 297 14 0 chr9 75668471 75668545 -42194082 - MLT1F1 LTR MaLR -442 125 51 3531 154 128 112 chr9 75668545 75668971 -42193656 - L1MC3 LINE L1 -563 7616 7083 230 246 74 74 chr9 75669264 75669386 -42193241 - MER5A DNA MER1_type -2 187 66 2085 102 33 0 chr9 75669858 75670173 -42192454 + AluSx SINE Alu 1 324 0 635 200 150 6 chr9 75670633 75670813 -42191814 + MER20 DNA MER1_type 9 214 -5 491 165 10 31 chr9 75670920 75671017 -42191610 + FLAM_A SINE Alu 35 129 -13 444 181 1 96 chr9 75672375 75672459 -42190168 - L1MC3 LINE L1 -601 6035 5982 1990 139 7 13 chr9 75672459 75672769 -42189858 - AluJb SINE Alu -4 308 1 444 181 1 96 chr9 75672769 75672812 -42189815 - L1MC3 LINE L1 -654 5982 5937 * 500 224 287 8 chr9 75672791 75673028 -42189599 - L1MC3 LINE L1 -1111 5429 5127 * 1425 254 5 20 chr9 75673026 75673424 -42189203 + L1M4 LINE L1 4183 4574 -1572 1017 217 4 16 chr9 75673451 75673700 -42188927 - L1MC3 LINE L1 -1414 5126 4881 260 226 98 20 chr9 75673737 75673839 -42188788 - L1MC3 LINE L1 -6413 127 18 1537 200 0 11 chr9 75673845 75674115 -42188512 + Tigger7 DNA MER2_type 1 267 -2220 574 146 11 0 chr9 75674113 75674202 -42188425 + Tigger7 DNA MER2_type 2394 2483 -8 * 247 369 57 8 chr9 75674205 75674327 -42188300 + L2 LINE L2 3145 3272 0 689 289 24 24 chr9 75674473 75674722 -42187905 + MIR SINE MIR 12 260 -2 2366 90 3 0 chr9 75674871 75675171 -42187456 + AluSp SINE Alu 1 301 -12 399 205 156 25 chr9 75675338 75675460 -42187167 + L1MEd LINE L1 17 154 -5965 4830 190 43 26 chr9 75675481 75676648 -42185979 + L1MA4 LINE L1 2600 3786 -2360 2006 118 3 17 chr9 75676650 75676946 -42185681 + AluSc SINE Alu 1 292 -17 5951 147 22 34 chr9 75676946 75677019 -42185608 + L1MA4 LINE L1 4321 4393 -1907 222 37 0 0 chr9 75677019 75677046 -42185581 + (CA)n Simple_repeat Simple_repeat 2 28 0 5951 147 22 34 chr9 75677046 75678582 -42184045 + L1MA4 LINE L1 4393 5926 -374 2377 103 3 0 chr9 75678582 75678893 -42183734 + AluSx SINE Alu 1 312 0 5951 147 22 34 chr9 75678893 75679257 -42183370 + L1MA4 LINE L1 5926 6293 -7 1931 138 0 4 chr9 75679352 75679627 -42183000 - AluJb SINE Alu -38 274 1 237 118 0 0 chr9 75679855 75679889 -42182738 + Alu SINE Alu 193 226 -77 612 352 22 8 chr9 75679907 75680174 -42182453 + L1MEd LINE L1 502 772 -5347 15789 176 51 16 chr9 75680207 75684304 -42178323 + L1PB1 LINE L1 762 5196 -1671 279 0 0 0 chr9 75684304 75684335 -42178292 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 15789 176 51 16 chr9 75684335 75686067 -42176560 + L1PB1 LINE L1 5196 6865 -2 205 340 0 39 chr9 75686881 75686984 -42175643 - MIR SINE MIR -63 145 47 661 140 33 13 chr9 75688545 75688695 -42173932 + CT-rich Low_complexity Low_complexity 2 154 0 2191 122 3 0 chr9 75688703 75689007 -42173620 - AluSq SINE Alu -6 307 3 2212 116 0 3 chr9 75689077 75689379 -42173248 + AluSx SINE Alu 1 301 -11 352 264 151 38 chr9 75689474 75689633 -42172994 - MLT1J LTR MaLR -331 180 4 387 238 53 33 chr9 75689763 75689914 -42172713 - L1ME4a LINE L1 -38 6083 5930 762 229 92 22 chr9 75690334 75690561 -42172066 - MIR SINE MIR 0 262 20 551 375 68 16 chr9 75690553 75690876 -42171751 - L3 LINE CR1 -390 1187 848 * 193 162 27 0 chr9 75692587 75692624 -42170003 - L2 LINE L2 -25 3247 3210 205 303 22 11 chr9 75692644 75692733 -42169894 - MIR SINE MIR -57 151 62 589 252 72 13 chr9 75692935 75693264 -42169363 - LTR16A LTR ERVL -9 441 73 294 218 0 0 chr9 75693410 75693465 -42169162 + HsTC2 DNA Tc2 20 74 -1824 1062 196 10 10 chr9 75693774 75693978 -42168649 + MER2 DNA MER2_type 8 211 -134 360 208 65 0 chr9 75694428 75694505 -42168122 + MER2 DNA MER2_type 264 345 0 370 278 83 46 chr9 75694805 75695132 -42167495 - HAL1 LINE L1 -295 2212 1874 233 216 20 0 chr9 75695256 75695307 -42167320 + (CA)n Simple_repeat Simple_repeat 2 53 0 1209 172 90 68 chr9 75695308 75695662 -42166965 - L1ME2 LINE L1 -9 6155 5794 362 192 0 14 chr9 75695669 75695742 -42166885 - MLT1A2 LTR MaLR 0 374 303 380 209 0 0 chr9 75695744 75695811 -42166816 - MLT1A2 LTR MaLR -307 67 1 373 78 0 0 chr9 75695811 75695862 -42166765 - MLT1A2-int LTR MaLR 0 1735 1685 289 204 0 0 chr9 75695865 75695914 -42166713 + Tigger5 DNA MER2_type 7 55 -2268 * 344 171 13 66 chr9 75695883 75695959 -42166668 + Tigger5 DNA MER2_type 2251 2322 -1 498 139 23 12 chr9 75695993 75696079 -42166548 + Tigger5 DNA MER2_type 2237 2323 0 3808 220 36 71 chr9 75696079 75697218 -42165409 - MLT1A2-int LTR MaLR -48 1323 225 1042 248 104 29 chr9 75697216 75697773 -42164854 + L1ME LINE L1 2390 2988 -3158 * 1367 150 109 12 chr9 75697781 75698028 -42164599 + AluJo SINE Alu 23 293 -19 1020 251 23 33 chr9 75698031 75698461 -42164166 + L1ME LINE L1 3032 3457 -2689 1372 184 36 57 chr9 75698477 75698813 -42163814 - MER33 DNA MER1_type -5 319 1 32 26 0 0 chr9 75698845 75698884 -42163743 + AT_rich Low_complexity Low_complexity 1 39 0 288 298 26 9 chr9 75698930 75699044 -42163583 + L1ME LINE L1 5401 5516 -648 305 131 16 0 chr9 75699244 75699305 -42163322 + (TG)n Simple_repeat Simple_repeat 2 63 0 2410 62 0 0 chr9 75699491 75699780 -42162847 - AluY SINE Alu -22 289 1 201 214 126 117 chr9 75700783 75700807 -42161820 + L2 LINE L2 3169 3191 -81 2333 103 10 0 chr9 75700807 75701117 -42161510 - AluSp SINE Alu 0 313 1 201 214 126 117 chr9 75701117 75701195 -42161432 + L2 LINE L2 3191 3272 0 1666 123 15 27 chr9 75702005 75702266 -42160361 + AluJo SINE Alu 44 301 -11 741 222 74 6 chr9 75702730 75702906 -42159721 - MER63A DNA MER1_type -22 188 1 1324 160 0 14 chr9 75703150 75703362 -42159265 + AluJb SINE Alu 89 297 -15 1027 289 33 25 chr9 75703600 75704115 -42158512 + HAL1b LINE L1 6 524 -824 2234 96 0 10 chr9 75704549 75704842 -42157785 + AluSx SINE Alu 1 290 -22 1983 153 0 0 chr9 75705013 75705319 -42157308 + AluSx SINE Alu 1 306 0 357 332 24 19 chr9 75705331 75705536 -42157091 + L1M4 LINE L1 2207 2412 -3734 530 254 321 0 chr9 75705576 75705844 -42156783 + L1MC4 LINE L1 7688 8041 -1 2687 48 0 0 chr9 75705851 75706162 -42156465 + AluY SINE Alu 1 311 0 299 160 120 0 chr9 75706190 75706265 -42156362 + L1ME3 LINE L1 6079 6162 0 2573 58 0 3 chr9 75706275 75706586 -42156041 + AluY SINE Alu 2 311 0 291 233 35 12 chr9 75706757 75706843 -42155784 + L1MC4 LINE L1 7924 8011 -31 28 102 0 0 chr9 75707663 75707761 -42154866 + GC_rich Low_complexity Low_complexity 1 98 0 250 385 0 0 chr9 75707783 75707892 -42154735 + C-rich Low_complexity Low_complexity 1 109 0 2255 85 10 0 chr9 75708102 75708396 -42154231 + AluSx SINE Alu 7 303 -9 3106 85 30 5 chr9 75708434 75708868 -42153759 + L1MA1 LINE L1 5854 6298 -4 26 104 0 0 chr9 75708875 75708971 -42153656 + AT_rich Low_complexity Low_complexity 1 96 0 1935 154 7 0 chr9 75709039 75709337 -42153290 - AluSx SINE Alu -12 300 1 1956 124 157 57 chr9 75709759 75710147 -42152480 + MSTA LTR MaLR 2 428 0 2022 158 86 0 chr9 75710797 75711133 -42151494 + MLT1A1 LTR MaLR 1 365 0 245 275 0 62 chr9 75711187 75711267 -42151360 + MIR SINE MIR 30 104 -158 331 289 58 0 chr9 75711611 75711715 -42150912 + LTR67 LTR ERVL 441 550 -7 585 238 0 20 chr9 75711749 75711896 -42150731 + MLT2F LTR ERVL 3 146 -517 * 701 209 2 56 chr9 75711895 75712079 -42150548 + MLT1E3 LTR MaLR 46 276 -378 817 65 52 0 chr9 75712217 75712372 -42150255 + (TCTA)n Simple_repeat Simple_repeat 3 165 0 562 80 86 0 chr9 75712391 75712554 -42150073 + (TCTA)n Simple_repeat Simple_repeat 4 180 0 267 152 0 0 chr9 75712559 75712605 -42150022 + MLT2F LTR ERVL 617 662 -1 285 278 130 9 chr9 75712605 75712713 -42149914 + MIR SINE MIR 108 228 -34 3054 188 29 53 chr9 75713496 75714263 -42148364 + L1MB7 LINE L1 5428 6175 -9 234 128 0 0 chr9 75714642 75714681 -42147946 + (TCCC)n Simple_repeat Simple_repeat 1 39 0 647 264 68 0 chr9 75715363 75715526 -42147101 - MIR SINE MIR -69 193 20 3423 86 0 0 chr9 75715545 75716000 -42146627 - L1PA14 LINE L1 0 6161 5707 343 245 14 101 chr9 75716096 75716235 -42146392 + MIR SINE MIR 61 187 -75 193 287 41 57 chr9 75716314 75716436 -42146191 - MIR SINE MIR -56 206 87 233 383 0 12 chr9 75716856 75716937 -42145690 - L3 LINE CR1 -1 1576 1497 288 279 36 72 chr9 75717006 75717117 -42145510 + MIR SINE MIR 34 140 -122 329 276 0 0 chr9 75717381 75717479 -42145148 - MIR SINE MIR 0 262 165 234 341 8 46 chr9 75717631 75717764 -42144863 - MIR SINE MIR -73 135 25 278 336 28 28 chr9 75718263 75718370 -42144257 + L3 LINE CR1 1256 1362 -215 635 253 49 19 chr9 75718563 75718725 -42143902 - MER5B DNA MER1_type -1 177 11 274 167 0 33 chr9 75719928 75719988 -42142639 - Alu SINE Alu -9 293 236 561 125 0 0 chr9 75720206 75720294 -42142333 + (TTCC)n Simple_repeat Simple_repeat 2 89 0 2254 51 0 11 chr9 75720294 75720569 -42142058 - AluY SINE Alu -39 272 1 518 302 47 12 chr9 75720878 75721234 -42141393 + LTR16A LTR ERVL 57 450 0 254 310 8 62 chr9 75721406 75721535 -42141092 - MLT1K LTR MaLR -91 497 376 482 322 19 15 chr9 75721647 75721852 -42140775 - MLT1K LTR MaLR -357 231 26 673 303 17 0 chr9 75722110 75722288 -42140339 - MER5A DNA MER1_type -6 183 3 2088 109 11 0 chr9 75722346 75722654 -42139973 - AluSx SINE Alu 0 316 6 320 316 38 15 chr9 75722675 75722808 -42139819 + L2 LINE L2 2925 3060 -212 680 71 0 0 chr9 75722864 75722948 -42139679 + AluJ/FLAM SINE Alu 2 85 -227 192 283 0 50 chr9 75722986 75723046 -42139581 + L2 LINE L2 3185 3241 -31 362 315 18 0 chr9 75723155 75723266 -42139361 + MIR SINE MIR 61 173 -89 1034 269 13 93 chr9 75723279 75723528 -42139099 - L2 LINE L2 -12 3301 3102 2444 53 0 0 chr9 75723528 75723809 -42138818 - AluY SINE Alu -11 300 20 1034 269 13 93 chr9 75723809 75724008 -42138619 - L2 LINE L2 -211 3102 2889 1134 217 18 0 chr9 75724079 75724296 -42138331 - MER58A DNA MER1_type 0 224 4 222 219 231 71 chr9 75725455 75725624 -42137003 + MIR3 SINE MIR 13 208 0 1714 179 65 28 chr9 75726602 75726999 -42135628 - Tigger2 DNA MER2_type -2 2716 2305 592 145 0 29 chr9 75727026 75727147 -42135480 - Tigger2a DNA MER2_type -325 109 1 254 272 62 12 chr9 75728452 75728533 -42134094 - MIR SINE MIR -58 150 66 431 225 183 0 chr9 75728846 75728988 -42133639 - MER5A DNA MER1_type -21 168 1 513 241 27 0 chr9 75729031 75729203 -42133424 - MER58B DNA MER1_type -28 313 19 695 179 36 14 chr9 75729574 75729714 -42132913 + L1PB4 LINE L1 6012 6154 -2 24 0 0 0 chr9 75730559 75730583 -42132044 + AT_rich Low_complexity Low_complexity 1 24 0 297 75 0 0 chr9 75730943 75730983 -42131644 + (CA)n Simple_repeat Simple_repeat 2 41 0 325 236 209 0 chr9 75732888 75733036 -42129591 + L1ME3A LINE L1 5908 6086 -84 649 256 84 11 chr9 75734319 75734510 -42128117 - MER3 DNA MER1_type 0 209 5 261 0 0 0 chr9 75738783 75738812 -42123815 + (CA)n Simple_repeat Simple_repeat 2 30 0 2332 79 3 3 chr9 75739594 75739884 -42122743 - AluSg1 SINE Alu -19 290 1 315 241 106 43 chr9 75748042 75748203 -42114424 - MIR SINE MIR -63 145 23 197 324 65 0 chr9 75750183 75750297 -42112330 - MIR SINE MIR -68 140 31 2212 114 3 0 chr9 75752499 75752797 -42109830 - AluSq SINE Alu -10 303 5 23 0 0 0 chr9 75752822 75752845 -42109782 + AT_rich Low_complexity Low_complexity 1 23 0 1013 186 59 0 chr9 75752902 75753106 -42109521 + L1MC1 LINE L1 6117 6332 -1 2247 92 16 22 chr9 75754047 75754361 -42108266 - AluSx SINE Alu 0 312 1 1629 184 3 10 chr9 75754361 75754521 -42108106 - AluJo SINE Alu -12 300 141 1706 179 38 0 chr9 75754521 75754811 -42107816 - AluJb SINE Alu -11 301 1 1629 184 3 10 chr9 75754811 75754944 -42107683 - AluJo SINE Alu -171 141 9 2226 116 0 28 chr9 75757248 75757566 -42105061 + AluY SINE Alu 1 309 -2 323 330 105 74 chr9 75757994 75758213 -42104414 - L2 LINE L2 -46 3226 2994 2350 81 10 0 chr9 75758213 75758510 -42104117 + AluSp SINE Alu 1 300 -13 323 330 105 74 chr9 75758510 75758575 -42104052 - L2 LINE L2 -278 2994 2933 2488 61 3 0 chr9 75759998 75760291 -42102336 - AluSg SINE Alu -10 300 7 288 283 9 19 chr9 75760604 75760710 -42101917 + GA-rich Low_complexity Low_complexity 5 109 0 25 0 0 0 chr9 75760974 75760999 -42101628 + AT_rich Low_complexity Low_complexity 1 25 0 623 254 81 0 chr9 75763570 75763743 -42098884 + MER5A DNA MER1_type 1 187 -2 181 133 33 0 chr9 75766591 75766621 -42096006 - L3 LINE CR1 -1122 455 425 28 0 0 0 chr9 75767354 75767382 -42095245 + AT_rich Low_complexity Low_complexity 1 28 0 1378 216 63 7 chr9 75769246 75769364 -42093263 + AluJb SINE Alu 2 112 -200 254 93 0 23 chr9 75769364 75769407 -42093220 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 1378 216 63 7 chr9 75769407 75769575 -42093052 + AluJb SINE Alu 112 304 -8 990 141 32 0 chr9 75769577 75769733 -42092894 + FRAM SINE Alu 1 161 -15 192 77 0 0 chr9 75769866 75769892 -42092735 + (A)n Simple_repeat Simple_repeat 1 26 0 384 360 19 12 chr9 75770353 75770514 -42092113 + MIR3 SINE MIR 19 180 -28 2281 117 0 0 chr9 75771379 75771678 -42090949 + AluSx SINE Alu 1 299 -13 550 312 157 13 chr9 75775042 75775436 -42087191 - L2 LINE L2 0 3313 2863 1699 174 3 14 chr9 75775804 75776091 -42086536 - AluJb SINE Alu -12 300 17 2483 60 0 7 chr9 75776258 75776557 -42086070 - AluY SINE Alu -14 297 1 902 225 0 48 chr9 75776722 75776953 -42085674 + AluJo SINE Alu 89 308 -4 333 0 0 0 chr9 75776964 75777001 -42085626 + (CA)n Simple_repeat Simple_repeat 2 38 0 2233 151 18 8 chr9 75777059 75777457 -42085170 + L1MA4 LINE L1 5890 6291 -9 205 280 32 83 chr9 75777739 75777896 -42084731 + MIR SINE MIR 58 206 -56 293 276 69 69 chr9 75777966 75778082 -42084545 - MIR SINE MIR -110 152 37 663 154 115 0 chr9 75778176 75778306 -42084321 + Tigger4(Zombi) DNA MER2_type 1 145 -2586 * 4750 132 33 15 chr9 75778304 75779150 -42083477 + Tigger4(Zombi) DNA MER2_type 1871 2731 0 186 43 0 0 chr9 75782981 75783004 -42079623 + (A)n Simple_repeat Simple_repeat 1 23 0 219 232 0 18 chr9 75785914 75785970 -42076657 + GA-rich Low_complexity Low_complexity 4 58 0 413 158 40 50 chr9 75787341 75787442 -42075185 - MER45B DNA AcHobo -85 955 856 1160 151 41 37 chr9 75787609 75787827 -42074800 + MER20 DNA MER1_type 1 219 0 366 288 171 39 chr9 75788540 75788873 -42073754 + L2 LINE L2 2893 3269 -3 183 156 0 0 chr9 75789152 75789184 -42073443 + (CA)n Simple_repeat Simple_repeat 2 33 0 234 0 0 0 chr9 75789994 75790020 -42072607 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 2995 13 0 0 chr9 75790178 75790496 -42072131 + AluYb8 SINE Alu 1 318 0 21 36 0 0 chr9 75790663 75790691 -42071936 + AT_rich Low_complexity Low_complexity 1 28 0 191 237 26 0 chr9 75790727 75790765 -42071862 + L2 LINE L2 3216 3254 -18 228 245 41 0 chr9 75791497 75791546 -42071081 + L2 LINE L2 3252 3302 -11 200 214 0 29 chr9 75792469 75792539 -42070088 + (CCG)n Simple_repeat Simple_repeat 1 68 0 37 109 0 0 chr9 75792637 75792793 -42069834 + GC_rich Low_complexity Low_complexity 1 156 0 33 0 0 0 chr9 75792984 75793017 -42069610 + GC_rich Low_complexity Low_complexity 1 33 0 27 29 0 0 chr9 75793983 75794017 -42068610 + GC_rich Low_complexity Low_complexity 1 34 0 207 200 20 20 chr9 75794288 75794338 -42068289 + C-rich Low_complexity Low_complexity 5 54 0 231 36 0 0 chr9 75794522 75794550 -42068077 + (CA)n Simple_repeat Simple_repeat 2 29 0 253 206 0 0 chr9 75794649 75794712 -42067915 + (TG)n Simple_repeat Simple_repeat 1 63 0 207 0 0 0 chr9 75794981 75795004 -42067623 + (CCG)n Simple_repeat Simple_repeat 3 25 0 221 276 0 0 chr9 75795137 75795195 -42067432 + (CCG)n Simple_repeat Simple_repeat 1 58 0 23 0 0 0 chr9 75795362 75795385 -42067242 + GC_rich Low_complexity Low_complexity 1 23 0 240 224 30 15 chr9 75795849 75795916 -42066711 + GA-rich Low_complexity Low_complexity 1 68 0 21 0 0 0 chr9 75797114 75797135 -42065492 + AT_rich Low_complexity Low_complexity 1 21 0 217 222 37 0 chr9 75797351 75797405 -42065222 + GA-rich Low_complexity Low_complexity 2 57 0 29 70 0 0 chr9 75797460 75797517 -42065110 + GC_rich Low_complexity Low_complexity 1 57 0 31 76 0 0 chr9 75797735 75797801 -42064826 + GC_rich Low_complexity Low_complexity 1 66 0 306 329 0 26 chr9 75797835 75797990 -42064637 + CT-rich Low_complexity Low_complexity 1 151 0 243 0 0 0 chr9 75801239 75801266 -42061361 + (TG)n Simple_repeat Simple_repeat 1 27 0 41 106 0 0 chr9 75802791 75802951 -42059676 + GC_rich Low_complexity Low_complexity 1 160 0 234 192 0 0 chr9 75803274 75803326 -42059301 + CT-rich Low_complexity Low_complexity 2 53 0 25 0 0 0 chr9 75804586 75804611 -42058016 + GC_rich Low_complexity Low_complexity 1 25 0 351 162 29 0 chr9 75805309 75805377 -42057250 - MER69A DNA AcHobo -72 105 36 3875 92 48 48 chr9 75805672 75806304 -42056323 + LTR10E LTR ERV1 1 632 -1 2131 126 27 0 chr9 75806946 75807239 -42055388 - AluSc SINE Alu -8 301 1 2017 147 84 25 chr9 75808874 75809060 -42053567 - MLT1B LTR MaLR 0 390 217 1868 190 0 3 chr9 75809060 75809371 -42053256 - AluJo SINE Alu -2 310 1 2017 147 84 25 chr9 75809371 75809552 -42053075 - MLT1B LTR MaLR -173 217 1 264 250 76 104 chr9 75809880 75810024 -42052603 + MER5B DNA MER1_type 1 140 -38 2603 83 43 3 chr9 75810034 75810384 -42052243 + THE1B LTR MaLR 1 364 0 231 240 73 10 chr9 75810384 75810480 -42052147 + L1MC4 LINE L1 7931 8032 -10 2521 88 0 0 chr9 75810504 75810812 -42051815 - AluSg SINE Alu -2 308 1 748 304 99 26 chr9 75811063 75811488 -42051139 + L1ME3A LINE L1 5426 5881 -289 2190 86 11 4 chr9 75811527 75811829 -42050798 + AluSc SINE Alu 1 304 0 2095 89 0 0 chr9 75812288 75812559 -42050068 + AluY SINE Alu 40 310 -1 1908 108 0 0 chr9 75812852 75813103 -42049524 + AluSx SINE Alu 49 299 -13 21 57 0 0 chr9 75813717 75813752 -42048875 + AT_rich Low_complexity Low_complexity 1 35 0 2037 209 55 0 chr9 75813941 75814381 -42048246 - MLT1C LTR MaLR -3 464 1 2378 99 3 0 chr9 75815338 75815640 -42046987 + AluSq SINE Alu 1 303 -10 1124 132 32 42 chr9 75815649 75815838 -42046789 + MER5A DNA MER1_type 2 188 -1 320 321 9 0 chr9 75816388 75816497 -42046130 + L1M4 LINE L1 4781 4890 -1256 951 226 62 24 chr9 75816512 75816848 -42045779 + LTR37A LTR ERV1 78 426 0 1559 173 10 58 chr9 75817094 75817406 -42045221 + AluJb SINE Alu 1 297 -15 650 257 96 55 chr9 75817657 75818054 -42044573 - MLT1J LTR MaLR 0 511 99 204 206 0 0 chr9 75818155 75818189 -42044438 + (TAG)n Simple_repeat Simple_repeat 2 35 0 344 329 101 32 chr9 75818211 75818369 -42044258 + MIR3 SINE MIR 1 169 -39 1492 189 121 31 chr9 75818640 75819094 -42043533 + MLT1D LTR MaLR 1 495 -10 5869 146 27 11 chr9 75819193 75820464 -42042163 + L1MA4 LINE L1 5008 6300 0 362 235 0 150 chr9 75820982 75821169 -42041458 + LTR16C LTR ERVL 161 319 -172 5582 111 43 15 chr9 75821381 75822942 -42039685 + L1PA13 LINE L1 4438 5954 -209 2306 104 0 7 chr9 75822942 75823240 -42039387 + AluSx SINE Alu 1 296 -16 207 0 0 0 chr9 75823243 75823266 -42039361 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5582 111 43 15 chr9 75823266 75823397 -42039230 + L1PA13 LINE L1 5955 6163 0 2092 115 7 0 chr9 75823644 75823948 -42038679 - AluSx SINE Alu 0 306 1 23 33 0 0 chr9 75824005 75824035 -42038592 + AT_rich Low_complexity Low_complexity 1 30 0 2329 97 10 0 chr9 75824905 75825205 -42037422 + AluSg SINE Alu 1 303 -7 355 281 246 20 chr9 75826145 75826348 -42036279 + MIR SINE MIR 2 250 -12 1345 266 95 9 chr9 75826374 75826826 -42035801 + LTR16C LTR ERVL 1 491 0 1826 130 14 24 chr9 75827245 75827538 -42035089 - AluJb SINE Alu -19 293 4 1790 164 14 4 chr9 75827580 75827888 -42034739 - AluJo SINE Alu 0 311 1 2232 138 0 0 chr9 75828225 75828536 -42034091 + AluSx SINE Alu 1 311 -1 2206 115 3 0 chr9 75828682 75828977 -42033650 - AluSx SINE Alu -11 301 6 694 308 143 36 chr9 75829547 75830189 -42032438 - L2 LINE L2 -339 2975 2265 2383 110 0 0 chr9 75830336 75830644 -42031983 + AluSx SINE Alu 1 308 -4 378 366 109 36 chr9 75830676 75831208 -42031419 + L2 LINE L2 2199 2769 -545 1620 148 79 21 chr9 75831575 75831689 -42030938 + AluJb SINE Alu 1 107 -205 180 0 0 0 chr9 75831689 75831709 -42030918 + (CA)n Simple_repeat Simple_repeat 1 20 0 1620 148 79 21 chr9 75831709 75831884 -42030743 + AluJb SINE Alu 107 307 -5 264 281 48 7 chr9 75832909 75833055 -42029572 + LTR16A1 LTR ERVL 1 152 -305 1586 186 74 57 chr9 75833271 75833290 -42029337 + L1MB8 LINE L1 4878 4895 -1283 1758 247 93 14 chr9 75833290 75833772 -42028855 - MLT2B1 LTR ERVL 0 520 1 1586 186 74 57 chr9 75833772 75834247 -42028380 + L1MB8 LINE L1 4895 5381 -797 2663 74 0 0 chr9 75834247 75834558 -42028069 + AluY SINE Alu 1 311 0 1586 186 74 57 chr9 75834558 75834744 -42027883 + L1MB8 LINE L1 5381 5562 -616 1478 153 3 118 chr9 75834849 75835240 -42027387 + L1MB8 LINE L1 5578 5923 -261 379 187 67 0 chr9 75835240 75835315 -42027312 + Tigger3b DNA MER2_type 1 80 -1151 1623 128 0 0 chr9 75835315 75835534 -42027093 + AluSx SINE Alu 1 219 -93 727 142 0 0 chr9 75835534 75835640 -42026987 + AluSg/x SINE Alu 188 293 -19 6620 143 28 1 chr9 75835640 75836772 -42025855 + Tigger3b DNA MER2_type 69 1231 0 238 155 194 97 chr9 75836772 75836875 -42025752 + L1MB8 LINE L1 5923 6035 -143 986 148 132 16 chr9 75836892 75837074 -42025553 - AluJo SINE Alu -22 290 88 268 98 0 39 chr9 75837081 75837132 -42025495 + L1MB8 LINE L1 6028 6076 -102 293 232 0 0 chr9 75837597 75837653 -42024974 - L2 LINE L2 -13 3300 3245 389 150 33 117 chr9 75837701 75837821 -42024806 - L1MA9 LINE L1 -35 6277 6168 220 307 104 86 chr9 75838003 75838166 -42024461 + MIR SINE MIR 70 235 -27 329 396 13 7 chr9 75838221 75838370 -42024257 - MIR3 SINE MIR -29 179 30 2455 79 0 10 chr9 75838518 75838822 -42023805 + AluSc SINE Alu 1 301 -8 532 250 18 30 chr9 75840020 75840184 -42022443 + MER5B DNA MER1_type 1 162 -16 31 26 0 0 chr9 75840196 75840234 -42022393 + GC_rich Low_complexity Low_complexity 1 38 0 941 216 78 40 chr9 75840352 75840758 -42021869 + MLT1C LTR MaLR 1 351 -23 1474 206 35 46 chr9 75841493 75841862 -42020765 + MLT1A1 LTR MaLR 1 365 0 589 284 88 23 chr9 75842059 75842453 -42020174 + L2 LINE L2 2728 3147 -166 318 299 132 24 chr9 75843036 75843203 -42019424 - MIR3 SINE MIR -4 204 20 607 140 41 30 chr9 75843784 75844242 -42018385 + (CACAA)n Simple_repeat Simple_repeat 1 463 0 262 264 182 0 chr9 75845212 75845322 -42017305 - L1ME3A LINE L1 -76 6094 5965 763 208 178 59 chr9 75845397 75845768 -42016859 - L1ME3A LINE L1 -208 5962 5548 1444 118 25 5 chr9 75845998 75846201 -42016426 - AluJo SINE Alu -20 292 86 423 303 21 35 chr9 75846260 75846405 -42016222 - L2 LINE L2 -31 3241 3099 747 331 38 3 chr9 75846764 75847057 -42015570 - L2 LINE L2 -615 2699 2397 1724 164 13 45 chr9 75847564 75847876 -42014751 - AluJb SINE Alu -5 307 6 238 298 0 0 chr9 75848253 75848310 -42014317 - LTR67 LTR ERVL -93 464 408 473 196 196 33 chr9 75850938 75851122 -42011505 - MIR SINE MIR -12 250 37 1632 139 60 110 chr9 75852860 75852948 -42009679 - LTR12 LTR ERV1 -232 482 391 300 53 0 0 chr9 75852948 75852986 -42009641 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 2071 113 0 0 chr9 75852986 75853268 -42009359 - AluSc SINE Alu -27 282 1 1632 139 60 110 chr9 75853268 75853631 -42008996 - LTR12 LTR ERV1 -321 393 53 262 211 0 0 chr9 75853631 75853683 -42008944 - LTR30 LTR ERV1 -670 52 1 187 40 80 20 chr9 75853977 75854027 -42008600 + (CA)n Simple_repeat Simple_repeat 1 53 0 240 78 67 33 chr9 75854067 75854157 -42008470 + (CA)n Simple_repeat Simple_repeat 2 94 0 254 97 69 28 chr9 75854193 75854267 -42008360 + (CA)n Simple_repeat Simple_repeat 1 77 0 286 108 50 42 chr9 75854317 75854437 -42008190 + (CA)n Simple_repeat Simple_repeat 1 121 0 231 64 43 21 chr9 75854506 75854553 -42008074 + (CA)n Simple_repeat Simple_repeat 1 48 0 401 119 51 40 chr9 75854593 75854770 -42007857 + (CA)n Simple_repeat Simple_repeat 1 179 0 2436 108 0 0 chr9 75855744 75856051 -42006576 + AluSx SINE Alu 1 307 -5 444 274 150 26 chr9 75856267 75856415 -42006212 + MIR SINE MIR 9 196 -66 1649 157 45 7 chr9 75856415 75856701 -42005926 + AluJo SINE Alu 1 297 -15 444 274 150 26 chr9 75856701 75856778 -42005849 + MIR SINE MIR 196 262 0 2053 97 8 0 chr9 75858248 75858515 -42004112 + AluSc SINE Alu 31 299 -10 342 115 0 0 chr9 75858515 75858567 -42004060 + (GGGA)n Simple_repeat Simple_repeat 1 52 0 261 314 83 8 chr9 75858826 75858947 -42003680 - MIR SINE MIR -79 183 54 300 240 146 0 chr9 75859124 75859220 -42003407 - MER94 DNA DNA -23 111 2 529 291 175 23 chr9 75861206 75861549 -42001078 - LTR16C LTR ERVL -10 481 87 418 255 0 71 chr9 75861702 75861843 -42000784 + MLT1G LTR MaLR 163 293 -297 244 183 28 0 chr9 75861843 75861883 -42000744 + GA-rich Low_complexity Low_complexity 1 45 -28 2195 112 3 0 chr9 75861883 75862195 -42000432 + AluSx SINE Alu 1 312 0 244 183 28 0 chr9 75862195 75862225 -42000402 + GA-rich Low_complexity Low_complexity 45 73 0 310 226 294 25 chr9 75862245 75862449 -42000178 + MLT1G LTR MaLR 331 589 -1 981 197 5 16 chr9 75862807 75862995 -41999632 + AluJo SINE Alu 121 306 -6 183 156 0 0 chr9 75862995 75863027 -41999600 + GA-rich Low_complexity Low_complexity 1 32 0 195 302 206 0 chr9 75863413 75863539 -41999088 + MIR SINE MIR 80 231 -31 1472 209 35 52 chr9 75863709 75864131 -41998496 + LTR16C LTR ERVL 74 488 -3 1004 219 9 0 chr9 75864735 75864954 -41997673 + MLT2B2 LTR ERVL 1 221 -294 211 239 60 30 chr9 76064969 76065036 -41797591 + MIR3 SINE MIR 90 158 -50 1195 268 94 16 chr9 76065083 76065810 -41796817 + L2 LINE L2 2535 3311 -2 4653 146 17 18 chr9 76067235 76068051 -41794576 + L1MB3 LINE L1 5367 6181 -2 189 316 0 0 chr9 76069045 76069102 -41793525 + L2 LINE L2 3003 3059 -213 3323 203 35 15 chr9 76069997 76070373 -41792254 + L1ME1 LINE L1 5191 5558 -608 2191 115 3 7 chr9 76070373 76070677 -41791950 - AluSx SINE Alu -9 303 1 3323 203 35 15 chr9 76070677 76071106 -41791521 + L1ME1 LINE L1 5558 6019 -147 333 135 0 135 chr9 76071167 76071285 -41791342 - L1MB5 LINE L1 -134 6032 5937 545 260 31 10 chr9 76071255 76071277 -41791350 - L1MA1 LINE L1 -403 5899 5878 1121 198 16 8 chr9 76071277 76071519 -41791108 - L1ME1 LINE L1 -294 5872 5629 316 345 70 7 chr9 76071559 76071701 -41790926 - MIR SINE MIR -111 151 1 2108 118 0 0 chr9 76073405 76073684 -41788943 - AluSg SINE Alu -31 279 1 1742 163 34 3 chr9 76073809 76074103 -41788524 + AluJb SINE Alu 9 311 -1 2838 120 31 54 chr9 76074103 76074585 -41788042 + Tigger3(Golem) DNA MER2_type 2558 3028 -1 192 40 0 0 chr9 76074718 76074743 -41787884 + (TG)n Simple_repeat Simple_repeat 2 26 0 2123 133 27 0 chr9 76074745 76075082 -41787545 - MER7A DNA MER2_type -1 345 2 488 201 29 14 chr9 76075099 76075238 -41787389 - L1ME1 LINE L1 -9 6157 6017 5935 235 65 29 chr9 76075298 76075997 -41786630 + L1MEc LINE L1 1975 2647 -3568 2145 131 7 7 chr9 76075997 76076302 -41786325 + AluSx SINE Alu 1 305 -7 5935 235 65 29 chr9 76076302 76077822 -41784805 + L1MEc LINE L1 2647 4219 -1996 1045 206 72 44 chr9 76077821 76077946 -41784681 + L1MEc LINE L1 4796 4916 -1299 * 2129 116 10 10 chr9 76077946 76078239 -41784388 - AluSx SINE Alu -19 293 1 1045 206 72 44 chr9 76078239 76078434 -41784193 + L1MEc LINE L1 4916 5125 -1090 1014 231 74 99 chr9 76078535 76079038 -41783589 - MLT1J LTR MaLR -11 500 11 233 197 30 0 chr9 76079740 76079806 -41782821 + (TTTAA)n Simple_repeat Simple_repeat 1 68 0 1198 261 94 25 chr9 76080112 76080518 -41782109 - MLT1J2 LTR MaLR 0 450 17 212 325 40 48 chr9 76080566 76080692 -41781935 - L2 LINE L2 -15 3257 3133 4841 112 9 21 chr9 76081869 76082625 -41780002 - L1MA8 LINE L1 -221 6070 5324 259 234 0 0 chr9 76082773 76082837 -41779790 + MIR SINE MIR 79 142 -66 1361 181 26 30 chr9 76083548 76083818 -41778809 - AluJo SINE Alu -2 310 42 1019 187 37 0 chr9 76083937 76084178 -41778449 - L1MA8 LINE L1 -3 6288 6039 6179 199 32 28 chr9 76084178 76086114 -41776513 - L1ME1 LINE L1 -269 5909 3983 234 0 0 0 chr9 76086114 76086140 -41776487 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1323 124 42 0 chr9 76086140 76086357 -41776270 - L1MA6 LINE L1 -9 6291 6066 6179 199 32 28 chr9 76086357 76086428 -41776199 - L1ME1 LINE L1 -2194 3984 3893 2834 16 0 0 chr9 76086441 76086745 -41775882 - AluYb8 SINE Alu -14 304 1 367 281 74 8 chr9 76087542 76087663 -41774964 - MIR SINE MIR -71 191 63 189 0 0 0 chr9 76087923 76087944 -41774683 + (TC)n Simple_repeat Simple_repeat 1 21 0 * 360 111 0 0 chr9 76087943 76087997 -41774630 + (CA)n Simple_repeat Simple_repeat 1 54 0 840 206 18 0 chr9 76088754 76088972 -41773655 - Charlie5 DNA MER1_type 0 2620 2399 281 92 31 31 chr9 76089260 76089325 -41773302 + GA-rich Low_complexity Low_complexity 4 68 0 187 313 38 0 chr9 76090664 76090744 -41771883 - MIR SINE MIR -80 182 100 321 242 0 0 chr9 76090800 76090866 -41771761 + MIR SINE MIR 81 146 -62 349 308 103 6 chr9 76090902 76091058 -41771569 - MIR SINE MIR -79 183 13 275 279 0 0 chr9 76091336 76091404 -41771223 + MIR SINE MIR 78 145 -63 642 234 81 20 chr9 76091810 76092007 -41770620 + MIR SINE MIR 28 236 -26 454 322 39 10 chr9 76095937 76096142 -41766485 + MIR SINE MIR 52 262 0 273 326 0 41 chr9 76096484 76096582 -41766045 - L2 LINE L2 -177 3095 3002 3324 280 72 17 chr9 76096925 76098413 -41764214 + L1ME3A LINE L1 1207 2814 -3568 1962 158 0 34 chr9 76098413 76098735 -41763892 - AluJb SINE Alu -1 311 1 3324 280 72 17 chr9 76098735 76098951 -41763676 + L1ME3A LINE L1 2814 3017 -3365 330 228 22 33 chr9 76099184 76099276 -41763351 - MER65A LTR ERV1 -354 91 1 5480 148 13 62 chr9 76099279 76100261 -41762366 - ERVL-B2 LTR ERVL -2121 3643 2710 2323 169 25 13 chr9 76100254 76100651 -41761976 - ERVL-B2 LTR ERVL -3723 2041 1640 * 550 240 0 0 chr9 76100651 76100755 -41761872 - MLT2B2 LTR ERVL -106 409 306 7861 198 58 10 chr9 76100758 76102321 -41760306 - ERVL-B2 LTR ERVL -4124 1640 2 2880 167 9 43 chr9 76102322 76102855 -41759772 - MLT2B2 LTR ERVL 0 515 1 2741 260 66 15 chr9 76102980 76104071 -41758556 + L1ME3A LINE L1 4939 6117 -289 1879 166 10 7 chr9 76104071 76104366 -41758261 + AluJo SINE Alu 1 296 -16 2741 260 66 15 chr9 76104366 76104659 -41757968 + L1ME3A LINE L1 6117 6394 -12 268 306 100 0 chr9 76104727 76104868 -41757759 + MIR SINE MIR 37 189 -63 253 241 95 17 chr9 76105258 76105374 -41757253 + L1ME4a LINE L1 5996 6120 -1 476 282 16 27 chr9 76108013 76108201 -41754426 - L1ME4a LINE L1 -244 5877 5692 240 318 141 0 chr9 76111763 76111933 -41750694 + MIR SINE MIR 1 194 -68 193 225 62 50 chr9 76113021 76113101 -41749526 + MIR SINE MIR 56 136 -72 499 171 23 0 chr9 76114888 76114976 -41747651 - Tigger5 DNA MER2_type -1 2322 2233 360 169 26 65 chr9 76114960 76115037 -41747590 - Tigger5 DNA MER2_type -2249 74 1 * 209 229 119 9 chr9 76115251 76115360 -41747267 - MIR SINE MIR -70 192 72 298 250 146 28 chr9 76115451 76115595 -41747032 + MER20B DNA MER1_type 23 183 -600 336 245 115 7 chr9 76116372 76116511 -41746116 - L1ME4a LINE L1 -41 6080 5927 292 306 89 6 chr9 76116808 76116965 -41745662 + MIR SINE MIR 81 250 -12 551 339 18 22 chr9 76116989 76117216 -41745411 - MIR SINE MIR -3 259 34 248 265 15 0 chr9 76117250 76117318 -41745309 + CT-rich Low_complexity Low_complexity 4 72 0 1303 86 11 0 chr9 76118171 76118346 -41744281 + L1PA10 LINE L1 5988 6164 -4 2386 104 20 3 chr9 76118368 76118713 -41743914 - L1PA15 LINE L1 -6 6159 5809 275 280 42 42 chr9 76118797 76118915 -41743712 - L1ME4a LINE L1 -402 5719 5602 385 195 31 102 chr9 76119571 76119699 -41742928 + MIR SINE MIR 60 178 -84 320 241 43 35 chr9 76119809 76119902 -41742725 + MER58A DNA MER1_type 47 143 -198 2423 159 31 26 chr9 76119902 76120318 -41742309 + MER47B DNA MER2_type 1 418 0 320 241 43 35 chr9 76120318 76120340 -41742287 + MER58A DNA MER1_type 143 163 -61 472 269 21 15 chr9 76120400 76120554 -41742073 - MIR SINE MIR -84 178 26 240 250 207 9 chr9 76121970 76122086 -41740541 + L2 LINE L2 2907 3045 -227 1362 229 37 6 chr9 76123089 76123417 -41739210 - MER58B DNA MER1_type -3 338 1 235 243 14 0 chr9 76124085 76124155 -41738472 + L1M4 LINE L1 4967 5037 -1109 1698 128 0 0 chr9 76125799 76126048 -41736579 + AluSx SINE Alu 49 297 -15 363 305 130 48 chr9 76126085 76126439 -41736188 - L1ME4a LINE L1 -109 6012 5630 204 281 47 0 chr9 76126489 76126553 -41736074 + MIR3 SINE MIR 89 155 -53 281 185 0 0 chr9 76126686 76126740 -41735887 + L1ME4a LINE L1 6065 6118 -3 446 324 35 0 chr9 76128116 76128258 -41734369 - MIR SINE MIR -101 161 15 2404 63 3 0 chr9 76128651 76128954 -41733673 + AluY SINE Alu 1 304 -7 402 167 0 0 chr9 76129513 76129597 -41733030 + GA-rich Low_complexity Low_complexity 3 86 0 10371 170 27 22 chr9 76129788 76132625 -41730002 - L1PA15 LINE L1 -13 6152 3285 1265 126 0 0 chr9 76132682 76132864 -41729763 - AluSg/x SINE Alu -10 302 121 252 283 78 68 chr9 76132902 76133107 -41729520 - MIR SINE MIR 0 262 56 505 301 96 17 chr9 76133149 76133388 -41729239 - MIR SINE MIR -3 259 2 39882 73 11 7 chr9 76134047 76139233 -41723394 - L1PA6 LINE L1 -3 6151 937 8181 60 5 5 chr9 76139233 76140240 -41722387 + LTR13 LTR ERVK 1 1007 0 39882 73 11 7 chr9 76140240 76141171 -41721456 - L1PA6 LINE L1 -5217 937 11 1011 178 167 4 chr9 76141184 76141442 -41721185 - AluSq SINE Alu -3 300 1 733 249 115 14 chr9 76141831 76142048 -41720579 - MER102b DNA MER1_type 0 341 103 602 265 36 32 chr9 76143337 76143556 -41719071 - MIR SINE MIR -37 225 6 2227 236 86 39 chr9 76143610 76144466 -41718161 - L1ME3A LINE L1 -12 6158 5262 1024 147 0 0 chr9 76144466 76144623 -41718004 + AluSg/x SINE Alu 135 291 -21 868 263 67 27 chr9 76144628 76145001 -41717626 - L1ME3A LINE L1 -873 5273 4886 642 221 98 31 chr9 76145018 76145272 -41717355 - L1ME3A LINE L1 -1334 4812 4542 611 226 166 52 chr9 76145369 76145490 -41717137 + L1MC/D LINE L1 5261 5367 -992 1361 156 160 8 chr9 76145490 76145740 -41716887 - AluJo SINE Alu -14 288 1 611 226 166 52 chr9 76145740 76145972 -41716655 + L1MC/D LINE L1 5367 5659 -700 238 326 0 0 chr9 76145994 76146080 -41716547 + L1MC/D LINE L1 5742 5827 -1981 212 313 97 3 chr9 76146706 76146813 -41715814 + MIR SINE MIR 40 159 -49 195 288 110 0 chr9 76147332 76147405 -41715222 - MIR SINE MIR -71 137 57 1901 119 0 7 chr9 76147604 76147921 -41714706 + AluSx SINE Alu 2 316 0 1212 195 130 15 chr9 76147923 76148323 -41714304 - LTR48 LTR ERV1 -50 736 141 22 88 0 0 chr9 76148435 76148492 -41714135 + AT_rich Low_complexity Low_complexity 1 57 0 368 355 24 6 chr9 76148536 76148702 -41713925 - L1MEc LINE L1 -5197 1113 945 335 234 0 0 chr9 76148709 76148773 -41713854 - L1MC4 LINE L1 -1339 6703 6640 1948 130 0 0 chr9 76148786 76149071 -41713556 - AluSx SINE Alu -27 285 1 860 301 47 36 chr9 76149071 76149531 -41713096 - L1MEc LINE L1 -5193 926 459 1468 172 70 3 chr9 76149767 76150052 -41712575 - AluJb SINE Alu -7 305 2 2092 127 0 3 chr9 76150922 76151230 -41711397 - AluJo SINE Alu -5 307 1 673 319 50 4 chr9 76151244 76151482 -41711145 - MIR SINE MIR 0 262 14 316 339 40 0 chr9 76152169 76152293 -41710334 + MIR SINE MIR 120 248 -14 279 243 96 22 chr9 76152539 76152675 -41709952 - L1ME4a LINE L1 -14 6107 5962 320 292 192 24 chr9 76152743 76152993 -41709634 - L1ME4a LINE L1 -276 5845 5554 2210 102 3 3 chr9 76153892 76154196 -41708431 - AluSx SINE Alu -8 304 1 322 295 67 9 chr9 76155389 76155494 -41707133 - MIR3 SINE MIR -9 199 89 279 387 8 8 chr9 76157168 76157287 -41705340 + L2 LINE L2 3134 3252 -20 180 111 0 0 chr9 76157299 76157326 -41705301 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 211 328 13 4 chr9 76157341 76157447 -41705180 - MIR SINE MIR -64 144 37 183 246 88 0 chr9 76157793 76157850 -41704777 + MIR SINE MIR 85 146 -62 2299 214 44 15 chr9 76158797 76159338 -41703289 - MER89 LTR ERV1 0 559 3 851 168 38 16 chr9 76159369 76159554 -41703073 - MER53 DNA DNA 0 189 1 256 286 98 101 chr9 76160701 76160796 -41701831 - L2 LINE L2 -2 3270 3176 1317 197 140 33 chr9 76160796 76161131 -41701496 - MER93b LTR ERV1 0 373 3 256 286 98 101 chr9 76161131 76161392 -41701235 - L2 LINE L2 -96 3176 2915 239 296 136 76 chr9 76161757 76161889 -41700738 - L2 LINE L2 0 3272 3133 1437 181 143 12 chr9 76162888 76163281 -41699346 - L1MB8 LINE L1 -1 6177 5737 492 250 25 69 chr9 76163302 76163385 -41699242 + MIR SINE MIR 37 111 -151 2138 118 0 22 chr9 76163385 76163699 -41698928 - AluSx SINE Alu -5 307 1 492 250 25 69 chr9 76163699 76163775 -41698852 + MIR SINE MIR 111 189 -73 1264 266 74 110 chr9 76164210 76165328 -41697299 + L1MEd LINE L1 125 1202 -4917 534 16 0 0 chr9 76165409 76165472 -41697155 + (TTATG)n Simple_repeat Simple_repeat 3 65 0 1478 152 80 8 chr9 76165472 76165735 -41696892 - AluJo SINE Alu -30 282 1 2912 6 0 3 chr9 76166945 76167258 -41695369 - AluYb8 SINE Alu -6 312 1 694 328 51 24 chr9 76168028 76168573 -41694054 + L1MC4a LINE L1 5186 5636 -485 1484 183 10 61 chr9 76168573 76168885 -41693742 + AluJb SINE Alu 1 296 -16 694 328 51 24 chr9 76168885 76168998 -41693629 + L1MC4a LINE L1 5636 5744 -377 341 322 68 0 chr9 76169320 76169466 -41693161 - L1ME4a LINE L1 -5 6116 5961 235 328 149 15 chr9 76169583 76169784 -41692843 - L1ME4a LINE L1 -297 5824 5597 321 249 360 26 chr9 76170697 76170886 -41691741 + MIR SINE MIR 4 255 -7 182 171 29 0 chr9 76171166 76171201 -41691426 - MIR SINE MIR -76 132 97 537 217 119 61 chr9 76171956 76172159 -41690468 - MIR SINE MIR -19 243 35 416 258 81 25 chr9 76172458 76172617 -41690010 + MIR SINE MIR 3 168 -40 241 231 0 15 chr9 76172928 76172993 -41689634 + CT-rich Low_complexity Low_complexity 2 65 0 280 247 134 10 chr9 76172996 76173093 -41689534 - L2 LINE L2 -31 3241 3133 643 94 0 0 chr9 76173904 76173989 -41688638 + AluS SINE Alu 1 85 -227 1230 125 0 0 chr9 76174089 76174257 -41688370 + AluSg/x SINE Alu 138 305 -7 2129 162 37 57 chr9 76174257 76174856 -41687771 - L1ME4a LINE L1 -564 5614 5037 2417 103 0 3 chr9 76174856 76175168 -41687459 - AluSx SINE Alu -1 311 1 2129 162 37 57 chr9 76175168 76175336 -41687291 - L1ME4a LINE L1 -1141 5037 4867 3648 204 65 29 chr9 76175336 76176155 -41686472 + MER21B LTR ERV1 1 848 -15 1075 222 8 86 chr9 76176173 76176485 -41686142 - L1 LINE L1 -1970 4176 3894 2370 87 3 0 chr9 76176485 76176771 -41685856 + AluSx SINE Alu 12 298 -14 1075 222 8 86 chr9 76176771 76176818 -41685809 - L1 LINE L1 -2252 3894 3845 607 292 90 40 chr9 76176872 76177218 -41685409 - LTR24B LTR ERV1 -7 569 207 344 223 75 11 chr9 76177256 76177350 -41685277 - LTR24B LTR ERV1 -473 103 4 1073 214 84 20 chr9 76177637 76177993 -41684634 + L1MDb LINE L1 942 1320 -5089 2364 188 73 40 chr9 76178139 76178317 -41684310 + MER21B LTR ERV1 300 470 -393 2262 107 7 0 chr9 76178317 76178615 -41684012 + AluSc SINE Alu 1 300 -9 2364 188 73 40 chr9 76178615 76178967 -41683660 + MER21B LTR ERV1 470 848 -15 381 278 42 28 chr9 76180697 76180856 -41681771 - MIR3 SINE MIR -41 167 2 248 286 66 11 chr9 76181437 76181528 -41681099 + L2 LINE L2 2966 3061 -211 183 274 151 0 chr9 76181905 76181978 -41680649 - MIR3 SINE MIR -32 176 93 328 194 30 0 chr9 76183287 76183354 -41679273 - MIR SINE MIR -58 150 82 1951 91 74 44 chr9 76185469 76185808 -41676819 - THE1B LTR MaLR -2 362 14 297 331 14 36 chr9 76186286 76186425 -41676202 - MIR SINE MIR -70 192 57 288 148 19 0 chr9 76187524 76187578 -41675049 + L2 LINE L2 3258 3312 -1 470 309 25 6 chr9 76187831 76187993 -41674634 - MIR SINE MIR -35 227 63 278 224 52 0 chr9 76188421 76188499 -41674128 - MIR SINE MIR -62 146 60 190 184 41 20 chr9 76188458 76188507 -41674120 - L2 LINE L2 -1340 1974 1925 * 1678 164 123 38 chr9 76188649 76189014 -41673613 + MSTD LTR MaLR 1 396 0 283 366 17 6 chr9 76189302 76189477 -41673150 + L1MC/D LINE L1 5455 5631 -2177 1144 145 26 0 chr9 76189512 76189705 -41672922 + MLT1B LTR MaLR 1 198 -192 618 144 0 0 chr9 76189707 76189804 -41672823 + AluSg/x SINE Alu 206 302 -8 1000 161 26 0 chr9 76189821 76190014 -41672613 + MLT1B LTR MaLR 192 389 -1 352 315 49 38 chr9 76191589 76191815 -41670812 + MIR SINE MIR 17 244 -18 277 174 258 47 chr9 76191854 76191970 -41670657 + MIR3 SINE MIR 23 162 -46 192 317 73 37 chr9 76191911 76192075 -41670552 + L2 LINE L2 2642 2811 -503 * 1736 208 11 14 chr9 76192195 76192561 -41670066 - MLT1A1 LTR MaLR 0 365 1 813 221 124 71 chr9 76192652 76192991 -41669636 + MLT1E LTR MaLR 177 559 -34 362 299 153 62 chr9 76193024 76193111 -41669516 + L2 LINE L2 2807 2885 -428 2304 128 0 0 chr9 76193111 76193438 -41669189 - AluSx SINE Alu 0 312 1 362 299 153 62 chr9 76193438 76193815 -41668812 + L2 LINE L2 2885 3313 0 386 307 46 52 chr9 76195205 76195358 -41667269 - MLT1K LTR MaLR -423 165 14 253 259 19 0 chr9 76195428 76195482 -41667145 - MIR SINE MIR -90 118 64 3121 68 2 2 chr9 76195543 76195941 -41666686 - MLT2A1 LTR ERVL 0 444 47 585 227 88 86 chr9 76196016 76196355 -41666272 - MLT1J LTR MaLR -165 346 7 1999 184 14 6 chr9 76196789 76197148 -41665479 - MLT1A1 LTR MaLR -3 362 1 849 185 0 0 chr9 76197390 76197520 -41665107 + FLAM_C SINE Alu 2 131 -2 1046 202 64 40 chr9 76197538 76197666 -41664961 - L1M4c LINE L1 -4213 2171 2048 1721 162 3 52 chr9 76197666 76197975 -41664652 - AluJo SINE Alu -18 294 1 1046 202 64 40 chr9 76197975 76198298 -41664329 - L1M4c LINE L1 -4336 2048 1624 1032 268 75 10 chr9 76198404 76199009 -41663618 - L1M4c LINE L1 -5311 969 290 375 23 0 0 chr9 76199045 76199089 -41663538 + (CA)n Simple_repeat Simple_repeat 1 44 0 359 185 0 25 chr9 76199671 76199752 -41662875 - MER20B DNA MER1_type -16 767 689 286 191 0 0 chr9 76199761 76199824 -41662803 - MER20B DNA MER1_type -459 324 262 272 176 46 83 chr9 76199910 76200018 -41662609 - MER20B DNA MER1_type -655 128 25 195 42 0 0 chr9 76200945 76200969 -41661658 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3411 221 26 23 chr9 76202713 76203565 -41659062 + L1ME1 LINE L1 5323 6334 0 1771 206 49 3 chr9 76203837 76204186 -41658441 - MLT1A1 LTR MaLR 0 365 1 742 239 6 0 chr9 76204571 76204738 -41657889 - L1ME LINE L1 -395 5771 5604 * 1104 198 61 77 chr9 76204737 76205144 -41657483 + L1ME1 LINE L1 5776 6334 0 596 316 103 19 chr9 76205544 76205854 -41656773 - L2 LINE L2 -8 3305 2970 297 109 0 0 chr9 76206173 76206219 -41656408 + (CGGGG)n Simple_repeat Simple_repeat 1 46 0 24 0 0 0 chr9 76206276 76206300 -41656327 + GC_rich Low_complexity Low_complexity 1 24 0 180 0 0 0 chr9 76207249 76207269 -41655358 + (CAAAC)n Simple_repeat Simple_repeat 5 24 0 325 326 74 0 chr9 76207446 76207581 -41655046 + MIR SINE MIR 4 148 -114 227 339 0 0 chr9 76207791 76207850 -41654777 - L2 LINE L2 -10 3262 3204 275 312 152 32 chr9 76208617 76208742 -41653885 - MIR3 SINE MIR -31 177 38 303 278 43 43 chr9 76209047 76209162 -41653465 + MIR3 SINE MIR 88 202 -6 397 103 0 29 chr9 76209968 76210036 -41652591 - Tigger3(Golem) DNA MER2_type -686 2343 2278 * 580 215 0 0 chr9 76210027 76210134 -41652493 - Tigger3(Golem) DNA MER2_type -2921 108 2 560 167 303 12 chr9 76210326 76210488 -41652139 - MER3 DNA MER1_type 0 209 1 356 319 150 56 chr9 76210693 76211661 -41650966 + L2 LINE L2 2004 3079 -193 269 314 0 0 chr9 76212387 76212457 -41650170 + L2 LINE L2 1877 1946 -1368 24 53 0 0 chr9 76212999 76213037 -41649590 + AT_rich Low_complexity Low_complexity 1 38 0 219 152 0 0 chr9 76213207 76213253 -41649374 + (TGAA)n Simple_repeat Simple_repeat 1 46 0 406 266 56 33 chr9 76213267 76213481 -41649146 - L1ME LINE L1 -336 5785 5567 185 324 162 36 chr9 76213746 76213857 -41648770 - MIR3 SINE MIR -39 169 45 288 246 262 16 chr9 76213858 76213984 -41648643 + MIR SINE MIR 4 160 -102 357 337 50 39 chr9 76215989 76216170 -41646457 + MIR3 SINE MIR 23 205 -3 844 260 27 5 chr9 76216177 76216396 -41646231 + MER58A DNA MER1_type 1 224 0 38 51 0 0 chr9 76216630 76216689 -41645938 + AT_rich Low_complexity Low_complexity 1 59 0 5261 126 54 24 chr9 76216808 76217975 -41644652 + L1MA8 LINE L1 5088 6285 -6 3435 196 65 7 chr9 76217958 76218677 -41643950 + L1MD2 LINE L1 5587 6347 -12 * 1652 186 7 20 chr9 76218691 76218987 -41643640 + AluJo SINE Alu 1 292 -20 368 315 110 30 chr9 76219456 76220303 -41642324 - L1MC/D LINE L1 -753 5393 4738 1634 260 121 20 chr9 76220432 76220970 -41641657 - MLT1E LTR MaLR 0 593 2 292 353 69 0 chr9 76220971 76221087 -41641540 + L2 LINE L2 3136 3259 -13 244 282 242 16 chr9 76221803 76221927 -41640700 - L2 LINE L2 0 3272 3121 26 0 0 0 chr9 76221986 76222012 -41640615 + AT_rich Low_complexity Low_complexity 1 26 0 24 53 0 0 chr9 76222434 76222472 -41640155 + AT_rich Low_complexity Low_complexity 1 38 0 23 54 0 0 chr9 76222546 76222583 -41640044 + AT_rich Low_complexity Low_complexity 1 37 0 25 31 0 0 chr9 76224980 76225012 -41637615 + AT_rich Low_complexity Low_complexity 1 32 0 27 62 0 0 chr9 76225670 76225718 -41636909 + AT_rich Low_complexity Low_complexity 1 48 0 2084 118 3 10 chr9 76226136 76226441 -41636186 - AluSq SINE Alu -10 303 1 183 167 0 0 chr9 76226836 76226878 -41635749 + (CAGTT)n Simple_repeat Simple_repeat 4 45 0 389 118 15 0 chr9 76227055 76227123 -41635504 - L1PA16 LINE L1 -1 6165 6097 208 307 149 9 chr9 76278003 76278117 -41584510 + MIR3 SINE MIR 9 138 -70 274 227 45 57 chr9 76279347 76279435 -41583192 + MIR3 SINE MIR 13 99 -109 465 255 43 14 chr9 76279709 76279850 -41582777 + MIR SINE MIR 84 228 -34 264 326 174 34 chr9 76281303 76282013 -41580614 + L2 LINE L2 2456 3270 -2 221 56 0 28 chr9 76282018 76282054 -41580573 + (TGAA)n Simple_repeat Simple_repeat 2 36 0 229 348 0 33 chr9 76282102 76282194 -41580433 + L2 LINE L2 3132 3220 -52 244 277 89 54 chr9 76282229 76282341 -41580286 - MIR SINE MIR -68 194 79 395 242 211 10 chr9 76282407 76282536 -41580091 - MER5A DNA MER1_type -2 187 22 329 0 0 24 chr9 76283537 76283579 -41579048 + (CA)n Simple_repeat Simple_repeat 2 42 0 594 195 149 67 chr9 76283579 76283658 -41578969 + MIR SINE MIR 29 100 -162 2359 105 0 3 chr9 76283658 76283962 -41578665 - AluSx SINE Alu -9 303 1 594 195 149 67 chr9 76283962 76284077 -41578550 + MIR SINE MIR 100 239 -23 388 229 94 0 chr9 76284103 76284199 -41578428 + MIR SINE MIR 2 106 -156 614 193 102 40 chr9 76284200 76284376 -41578251 + MLT1C LTR MaLR 6 192 -275 1258 209 4 4 chr9 76284443 76284692 -41577935 + MLT1C LTR MaLR 219 467 0 488 246 54 0 chr9 76284700 76284830 -41577797 + MIR SINE MIR 125 261 -1 1156 149 80 5 chr9 76284992 76285193 -41577434 - AluJb SINE Alu -21 291 76 517 288 89 11 chr9 76285194 76285475 -41577152 - L1MC/D LINE L1 -2242 5566 5264 2238 109 3 0 chr9 76285711 76286004 -41576623 - AluSq SINE Alu -19 294 1 213 39 0 0 chr9 76286071 76286097 -41576530 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 345 24 0 0 chr9 76286544 76286586 -41576041 + (CA)n Simple_repeat Simple_repeat 1 42 0 498 254 141 77 chr9 76286924 76287048 -41575579 - L3 LINE CR1 -59 1518 1403 263 28 28 0 chr9 76287048 76287084 -41575543 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 1816 164 0 0 chr9 76287084 76287358 -41575269 - AluJb SINE Alu -38 274 1 498 254 141 77 chr9 76287358 76287559 -41575068 - L3 LINE CR1 -173 1404 1171 2661 228 52 64 chr9 76287608 76288434 -41574193 + L1ME3 LINE L1 5347 6162 0 505 340 54 10 chr9 76288470 76288673 -41573954 - L3 LINE CR1 -509 1068 857 260 327 18 26 chr9 76288977 76289090 -41573537 - MIR3 SINE MIR -92 116 5 255 348 80 36 chr9 76289195 76289333 -41573294 + L2 LINE L2 3125 3268 -4 413 330 0 17 chr9 76289338 76289456 -41573171 - MIR SINE MIR -76 132 17 385 234 0 0 chr9 76289621 76289698 -41572929 + MER45C DNA AcHobo 25 101 -852 1232 138 0 0 chr9 76289698 76289872 -41572755 - AluSx SINE Alu -17 295 122 198 103 0 0 chr9 76289887 76289916 -41572711 + (T)n Simple_repeat Simple_repeat 1 29 0 1078 105 0 0 chr9 76289916 76290049 -41572578 - AluSx SINE Alu -179 133 1 791 252 45 18 chr9 76290049 76290271 -41572356 + MER45C DNA AcHobo 101 328 -625 429 242 23 39 chr9 76290249 76290377 -41572250 + MER45C DNA AcHobo 434 559 -394 * 399 258 17 8 chr9 76290499 76290619 -41572008 + MER45C DNA AcHobo 566 686 -267 859 156 0 0 chr9 76290688 76290810 -41571817 + FLAM_C SINE Alu 3 124 -19 775 170 11 90 chr9 76290821 76290908 -41571719 + MER45C DNA AcHobo 781 847 -734 2041 163 0 0 chr9 76290908 76291208 -41571419 - AluJb SINE Alu -12 300 1 775 170 11 90 chr9 76291208 76291308 -41571319 + MER45C DNA AcHobo 847 953 0 295 299 60 0 chr9 76292138 76292272 -41570355 - L2 LINE L2 -557 2757 2616 1663 159 10 3 chr9 76292349 76292644 -41569983 + L1MB3 LINE L1 5886 6182 -1 1677 169 40 23 chr9 76292693 76292994 -41569633 + AluJo SINE Alu 1 306 -6 18628 44 53 5 chr9 76293445 76295898 -41566729 - L1P LINE L1 -3574 2572 2 1997 228 70 0 chr9 76295900 76296457 -41566170 - L1MC4 LINE L1 -2164 5878 5283 4707 155 45 15 chr9 76296463 76297482 -41565145 - L1MB7 LINE L1 -19 6165 5129 466 202 11 67 chr9 76297482 76297660 -41564967 - L1MB7 LINE L1 -1554 4592 4425 1302 133 22 0 chr9 76297705 76297886 -41564741 + AluSx SINE Alu 1 185 -127 4112 106 186 91 chr9 76298088 76299506 -41563121 + pTR5 LTR ERV1 741 2438 0 447 269 129 89 chr9 76300064 76300214 -41562413 + L1MC4a LINE L1 5698 5841 -1967 1800 144 6 55 chr9 76300214 76300541 -41562086 + AluJo SINE Alu 1 311 -1 447 269 129 89 chr9 76300541 76300684 -41561943 + L1MC4a LINE L1 5841 6010 -1798 2503 55 3 19 chr9 76300684 76300992 -41561635 - AluY SINE Alu -8 303 1 447 269 129 89 chr9 76300992 76301047 -41561580 + L1MC4a LINE L1 6010 6061 -1747 388 331 49 6 chr9 76301233 76301396 -41561231 - L3 LINE CR1 -100 1477 1308 463 331 8 8 chr9 76301430 76301560 -41561067 + MIR SINE MIR 23 152 -110 1824 123 73 0 chr9 76301564 76301854 -41560773 + AluSx SINE Alu 5 313 0 686 247 66 80 chr9 76302349 76302713 -41559914 - Charlie8 DNA MER1_type -1986 431 73 275 242 15 0 chr9 76302846 76302912 -41559715 + MIR SINE MIR 185 251 -11 464 267 69 0 chr9 76302987 76303118 -41559509 - MER91C DNA MER1_type 0 140 1 220 279 174 0 chr9 76303264 76303350 -41559277 - MIR SINE MIR -61 147 47 1084 256 87 64 chr9 76303350 76303847 -41558780 - MLT1J LTR MaLR -2 509 2 262 300 71 95 chr9 76304232 76304655 -41557972 - L2 LINE L2 -53 3219 2807 315 211 96 70 chr9 76304893 76305184 -41557443 + L2 LINE L2 2879 3222 -50 201 154 0 26 chr9 76305870 76305909 -41556718 + (GCCTG)n Simple_repeat Simple_repeat 1 38 0 193 316 18 0 chr9 76306028 76306085 -41556542 + MIR SINE MIR 93 150 -112 331 148 0 0 chr9 76307464 76307518 -41555109 - L2 LINE L2 -4 3309 3256 312 289 78 75 chr9 76307797 76308020 -41554607 + L2 LINE L2 2799 3022 -250 480 264 8 16 chr9 76308052 76308177 -41554450 - L2 LINE L2 -18 3295 3172 249 33 0 0 chr9 76308179 76308209 -41554418 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 399 219 268 0 chr9 76308235 76308358 -41554269 + L2 LINE L2 2061 2216 -1098 490 214 71 14 chr9 76308358 76308498 -41554129 + L1MC5 LINE L1 7763 7910 -51 943 276 99 29 chr9 76308540 76308828 -41553799 + L2 LINE L2 2205 2532 -782 2184 92 3 20 chr9 76308828 76309120 -41553507 - AluSc SINE Alu -22 287 1 943 276 99 29 chr9 76309120 76309244 -41553383 + L2 LINE L2 2532 2646 -668 252 276 62 93 chr9 76309362 76309422 -41553205 + L1ME3A LINE L1 4957 5017 -1129 1965 133 65 0 chr9 76309422 76309715 -41552912 + AluJb SINE Alu 1 312 0 252 276 62 93 chr9 76309715 76309735 -41552892 + L1ME3A LINE L1 5017 5036 -1110 1696 166 9 49 chr9 76309735 76310060 -41552567 + AluJo SINE Alu 1 312 0 252 276 62 93 chr9 76310060 76310235 -41552392 + L1ME3A LINE L1 5036 5205 -941 972 254 218 19 chr9 76310302 76310971 -41551656 + L1ME3A LINE L1 5318 6119 -51 198 0 0 0 chr9 76311363 76311385 -41551242 + (A)n Simple_repeat Simple_repeat 1 22 0 189 291 0 0 chr9 76311574 76311660 -41550967 + (TG)n Simple_repeat Simple_repeat 2 87 0 216 224 35 35 chr9 76312099 76312157 -41550470 + L2 LINE L2 3215 3272 0 326 241 149 0 chr9 76312333 76312456 -41550171 + Charlie8 DNA MER1_type 143 281 -2136 2085 127 0 37 chr9 76313015 76313361 -41549266 + AluSg SINE Alu 1 310 0 274 214 0 18 chr9 76313460 76313516 -41549111 + L2 LINE L2 3216 3270 -2 223 272 62 0 chr9 76313732 76313813 -41548814 + L2 LINE L2 3223 3308 -5 246 374 55 0 chr9 76314240 76314331 -41548296 - MIR SINE MIR -57 151 56 1648 147 82 4 chr9 76314393 76314672 -41547955 + AluJo SINE Alu 1 301 -11 5070 92 38 6 chr9 76315094 76315802 -41546825 - L1PA13 LINE L1 0 6163 5429 2264 113 0 0 chr9 76315802 76316094 -41546533 - AluSx SINE Alu -20 292 1 5070 92 38 6 chr9 76316094 76316114 -41546513 - L1PA13 LINE L1 -734 5429 5411 373 330 51 0 chr9 76316288 76316406 -41546221 + MIR3 SINE MIR 36 159 -49 552 190 103 9 chr9 76316542 76316658 -41545969 + L2 LINE L2 3187 3313 0 1078 99 0 0 chr9 76317064 76317205 -41545422 - AluY SINE Alu -8 303 163 1108 194 281 8 chr9 76317730 76318097 -41544530 + MLT1C LTR MaLR 1 467 0 295 93 0 0 chr9 76318983 76319026 -41543601 + Charlie5 DNA MER1_type 2375 2417 -195 247 342 120 0 chr9 76319194 76319311 -41543316 - MIR3 SINE MIR -48 160 30 181 327 59 59 chr9 76319460 76319613 -41543014 - MIR SINE MIR 0 262 110 242 337 0 20 chr9 76319820 76319921 -41542706 - MIR SINE MIR -92 116 18 296 296 30 23 chr9 76320823 76320955 -41541672 - MER103 DNA DNA -2 164 32 2055 125 82 86 chr9 76321713 76322153 -41540474 - MLT1C LTR MaLR -3 464 27 1733 185 0 3 chr9 76322170 76322468 -41540159 - AluJo SINE Alu -15 297 1 600 271 155 0 chr9 76323035 76323252 -41539375 + MIR SINE MIR 7 259 -3 1615 214 69 75 chr9 76324065 76324103 -41538524 - MLT2B1 LTR ERVL 0 520 483 339 25 0 0 chr9 76324103 76324143 -41538484 + (TG)n Simple_repeat Simple_repeat 2 41 0 1615 214 69 75 chr9 76324143 76324627 -41538000 - MLT2B1 LTR ERVL -37 483 1 1507 154 4 19 chr9 76324627 76324894 -41537733 - ERVL-B1 LTR ERVL -8 5756 5494 434 108 0 0 chr9 76325096 76325161 -41537466 + Alu SINE Alu 243 307 -3 929 199 28 0 chr9 76325166 76325342 -41537285 + MER20 DNA MER1_type 39 219 0 679 275 11 6 chr9 76325709 76325891 -41536736 - MIR SINE MIR -1 261 79 2269 117 0 7 chr9 76326540 76326848 -41535779 + AluSg SINE Alu 1 306 -4 2129 90 0 11 chr9 76327034 76327312 -41535315 + AluSx SINE Alu 25 299 -13 308 248 143 23 chr9 76327488 76327621 -41535006 + MIR3 SINE MIR 52 200 -8 435 285 26 26 chr9 76328210 76328361 -41534266 + MIR3 SINE MIR 28 178 -30 255 61 0 0 chr9 76328410 76328443 -41534184 + (TC)n Simple_repeat Simple_repeat 1 33 0 290 255 0 69 chr9 76328912 76328962 -41533665 + MER94 DNA DNA 26 67 -67 2125 98 0 0 chr9 76328962 76329237 -41533390 + AluSx SINE Alu 32 306 -6 290 255 0 69 chr9 76329237 76329288 -41533339 + MER94 DNA DNA 67 120 -14 202 200 180 64 chr9 76329443 76329636 -41532991 + L2 LINE L2 2792 3002 -311 944 286 19 12 chr9 76329654 76329913 -41532714 + MIR SINE MIR 2 262 0 509 271 61 65 chr9 76329914 76330224 -41532403 + L2 LINE L2 3005 3313 0 510 296 8 0 chr9 76330261 76330386 -41532241 + L2 LINE L2 3183 3308 -5 199 328 23 69 chr9 76330386 76330560 -41532067 + L2 LINE L2 3128 3293 -20 240 35 0 0 chr9 76331071 76331100 -41531527 + (CAT)n Simple_repeat Simple_repeat 3 31 0 599 253 143 29 chr9 76331414 76331659 -41530968 - MLT1J LTR MaLR -8 503 231 782 183 126 26 chr9 76332180 76332371 -41530256 - L1MB5 LINE L1 0 6174 5965 935 137 7 0 chr9 76332479 76332618 -41530009 - AluY SINE Alu -171 140 1 248 254 16 0 chr9 76332771 76332834 -41529793 - L1ME4a LINE L1 -73 6048 5985 730 276 207 17 chr9 76332880 76333238 -41529389 - L2 LINE L2 0 3313 2888 256 303 45 0 chr9 76333290 76333379 -41529248 + MER117 DNA MER1_type 74 166 -31 538 243 212 5 chr9 76333740 76333929 -41528698 - MIR SINE MIR 0 262 35 24 0 0 0 chr9 76334342 76334366 -41528261 + AT_rich Low_complexity Low_complexity 1 24 0 792 341 55 34 chr9 76334368 76335104 -41527523 - L2 LINE L2 -42 3230 2489 265 238 16 0 chr9 76335324 76335387 -41527240 - L1ME4a LINE L1 -73 6048 5985 741 261 219 28 chr9 76335446 76335803 -41526824 - L2 LINE L2 -1 3312 2888 570 208 138 13 chr9 76335893 76336052 -41526575 + MER58A DNA MER1_type 46 224 0 249 200 18 0 chr9 76336056 76336111 -41526516 - L1ME4a LINE L1 -273 5848 5793 395 250 128 23 chr9 76336743 76336915 -41525712 - MIR SINE MIR -72 190 1 333 230 116 42 chr9 76336919 76337024 -41525603 + MIR3 SINE MIR 71 172 -36 335 242 159 0 chr9 76337026 76337158 -41525469 - MER103 DNA DNA -1 165 13 301 236 42 0 chr9 76337626 76337698 -41524929 - MIR SINE MIR -98 164 90 962 228 5 5 chr9 76337797 76337986 -41524641 + Tigger2a DNA MER2_type 1 189 -245 811 200 7 0 chr9 76337990 76338130 -41524497 - FLAM_C SINE Alu -1 142 2 1135 185 53 0 chr9 76338132 76338359 -41524268 + Tigger2a DNA MER2_type 206 444 0 2515 126 5 27 chr9 76338548 76338920 -41523707 + THE1B LTR MaLR 1 364 0 11396 98 23 6 chr9 76338921 76339538 -41523089 + THE1B-int LTR MaLR 2 607 -973 5610 163 31 36 chr9 76339538 76340615 -41522012 + MER11C LTR ERVK 1 1071 0 11396 98 23 6 chr9 76340615 76341545 -41521082 + THE1B-int LTR MaLR 607 1575 -5 247 229 0 0 chr9 76341833 76341881 -41520746 + THE1B-int LTR MaLR 1533 1580 0 2466 118 25 28 chr9 76341882 76342245 -41520382 + THE1B LTR MaLR 3 364 0 2268 111 10 0 chr9 76342398 76342695 -41519932 + AluSx SINE Alu 1 300 -12 1299 241 113 34 chr9 76342908 76343315 -41519312 + MLT1F LTR MaLR 1 439 -103 2624 190 120 14 chr9 76343799 76344451 -41518176 - L1ME2 LINE L1 -14 6150 5430 376 228 278 6 chr9 76345273 76345453 -41517174 + L1ME4a LINE L1 5769 5997 -124 594 318 80 29 chr9 76345533 76345986 -41516641 - L1ME4a LINE L1 -2040 5768 5293 860 286 90 27 chr9 76346672 76347039 -41515588 - L2 LINE L2 -10 3303 2914 288 299 133 33 chr9 76347243 76347482 -41515145 + MIR SINE MIR 2 262 0 31 26 0 0 chr9 76347502 76347540 -41515087 + AT_rich Low_complexity Low_complexity 1 38 0 487 253 120 21 chr9 76347542 76347954 -41514673 + MLT1G1 LTR MaLR 1 547 -43 1647 163 82 0 chr9 76348212 76348482 -41514145 + AluSg SINE Alu 1 292 -18 299 158 267 0 chr9 76348487 76348588 -41514039 + L2 LINE L2 2742 2869 -445 433 202 31 101 chr9 76348627 76348756 -41513871 + L2 LINE L2 3189 3308 -5 566 294 108 10 chr9 76348766 76348960 -41513667 - L2 LINE L2 -249 3064 2852 1569 138 13 49 chr9 76349008 76349312 -41513315 - AluJb SINE Alu -19 293 1 454 284 74 6 chr9 76349345 76349507 -41513120 - L2 LINE L2 -763 2551 2379 565 261 100 6 chr9 76351403 76351583 -41511044 + MIR SINE MIR 4 200 -62 2007 112 7 36 chr9 76352041 76352345 -41510282 - AluSx SINE Alu -14 298 4 21 36 0 0 chr9 76352878 76352906 -41509721 + AT_rich Low_complexity Low_complexity 1 28 0 256 125 54 18 chr9 76353051 76353163 -41509464 + (TA)n Simple_repeat Simple_repeat 1 116 0 31 68 0 0 chr9 76353169 76353228 -41509399 + AT_rich Low_complexity Low_complexity 1 59 0 348 24 0 0 chr9 76353260 76353301 -41509326 + (TA)n Simple_repeat Simple_repeat 1 41 0 1242 277 115 15 chr9 76353304 76353766 -41508861 - L2 LINE L2 -2 3311 2804 21 82 0 0 chr9 76354602 76354651 -41507976 + AT_rich Low_complexity Low_complexity 1 49 0 1091 176 58 5 chr9 76355311 76355516 -41507111 - MER20 DNA MER1_type -3 216 1 295 314 93 35 chr9 76357711 76357883 -41504744 - MIR3 SINE MIR -11 197 16 34 72 0 0 chr9 76358076 76358145 -41504482 + AT_rich Low_complexity Low_complexity 1 69 0 416 362 102 17 chr9 76360041 76360569 -41502058 + L2 LINE L2 2186 2758 -556 298 216 175 10 chr9 76360603 76360700 -41501927 + Charlie7 DNA MER1_type 43 155 -2457 269 250 80 23 chr9 76360710 76360798 -41501829 + Charlie7 DNA MER1_type 2516 2608 -4 204 301 87 29 chr9 76360942 76361045 -41501582 + L2 LINE L2 2950 3058 -214 1290 202 51 8 chr9 76361349 76361606 -41501021 - MER58 DNA MER1_type -62 279 12 525 209 70 104 chr9 76362337 76362538 -41500089 + MIR SINE MIR 52 245 -17 1465 205 51 0 chr9 76362549 76362842 -41499785 - AluJo SINE Alu -4 308 1 947 209 11 6 chr9 76363108 76363285 -41499342 - MER20 DNA MER1_type -41 178 1 310 212 45 0 chr9 76364226 76364292 -41498335 + L2 LINE L2 3244 3312 -1 25 0 0 0 chr9 76364777 76364802 -41497825 + AT_rich Low_complexity Low_complexity 1 25 0 225 0 0 0 chr9 76365289 76365314 -41497313 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 1746 122 0 0 chr9 76365848 76366085 -41496542 - AluSg SINE Alu -17 293 57 683 201 52 8 chr9 76366694 76366828 -41495799 + FRAM SINE Alu 19 158 -18 289 103 0 0 chr9 76366859 76366898 -41495729 - tRNA-Lys-AAG tRNA tRNA -37 39 1 2224 125 0 0 chr9 76367313 76367617 -41495010 - AluSx SINE Alu -8 304 1 218 183 14 70 chr9 76368216 76368287 -41494340 + (TATG)n Simple_repeat Simple_repeat 3 69 0 1813 139 42 19 chr9 76368321 76368631 -41493996 - Tigger1 DNA MER2_type -341 2077 1761 819 204 0 40 chr9 76368630 76368806 -41493821 - Tigger1 DNA MER2_type -2224 194 26 * 1050 152 0 24 chr9 76369409 76369574 -41493053 - FRAM SINE Alu -15 161 1 293 178 133 11 chr9 76369598 76369688 -41492939 + MIR SINE MIR 110 210 -52 1518 126 118 4 chr9 76370495 76370765 -41491862 + AluSx SINE Alu 1 301 -11 1002 270 108 37 chr9 76370776 76371150 -41491477 - L1MC4 LINE L1 -9 8033 7687 191 0 32 32 chr9 76371150 76371181 -41491446 + (TTTTG)n Simple_repeat Simple_repeat 2 175 0 2288 61 7 0 chr9 76371181 76371461 -41491166 - AluY SINE Alu -29 282 1 1002 270 108 37 chr9 76371461 76372081 -41490546 - L1MC4 LINE L1 -355 7687 7112 198 0 0 0 chr9 76372081 76372103 -41490524 + (TC)n Simple_repeat Simple_repeat 2 23 0 189 0 0 0 chr9 76372102 76372123 -41490504 + (TA)n Simple_repeat Simple_repeat 1 21 0 * 1002 270 108 37 chr9 76372103 76372526 -41490101 - L1MC4 LINE L1 -930 7112 6450 263 333 127 13 chr9 76373706 76373856 -41488771 - MIR SINE MIR -88 174 8 1737 124 0 0 chr9 76377688 76377946 -41484681 - AluSx SINE Alu -20 292 35 4411 144 16 1 chr9 76378157 76378849 -41483778 - ERVL LTR ERVL -470 5294 4593 22 0 0 0 chr9 76379195 76379217 -41483410 + AT_rich Low_complexity Low_complexity 1 22 0 360 350 49 12 chr9 76379339 76379502 -41483125 + MIR3 SINE MIR 4 172 -36 213 298 211 14 chr9 76379939 76380157 -41482470 - L2 LINE L2 -5 3267 3007 327 265 71 10 chr9 76381409 76381507 -41481120 - MIR SINE MIR -89 119 16 880 207 53 0 chr9 76381551 76381720 -41480907 - MIR SINE MIR -22 240 63 315 317 128 18 chr9 76381864 76382028 -41480599 + MIR3 SINE MIR 20 201 -7 321 339 18 18 chr9 76382528 76382640 -41479987 - MIR SINE MIR -96 112 6 730 275 9 14 chr9 76384174 76384385 -41478242 + MER63A DNA MER1_type 1 210 0 290 290 205 39 chr9 76384469 76384879 -41477748 - L2 LINE L2 -673 2641 2164 318 26 0 0 chr9 76385166 76385205 -41477422 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1047 138 15 15 chr9 76385209 76385404 -41477223 - SVA Other Other -342 1044 850 19374 27 0 1 chr9 76385504 76388561 -41474066 + L1PA2 LINE L1 3103 6155 0 1191 155 60 167 chr9 76388582 76388936 -41473691 + L1MD1 LINE L1 5861 6165 -77 1988 136 7 3 chr9 76388936 76389231 -41473396 - AluSx SINE Alu -16 296 1 1191 155 60 167 chr9 76389231 76389296 -41473331 + L1MD1 LINE L1 6165 6235 -7 550 186 18 0 chr9 76389853 76389966 -41472661 - MER3 DNA MER1_type -13 196 82 803 131 0 41 chr9 76389970 76390115 -41472512 + AluJb SINE Alu 1 139 -173 480 192 0 0 chr9 76390117 76390195 -41472432 - MER3 DNA MER1_type -131 78 1 182 337 31 20 chr9 76390861 76390959 -41471668 - MIR SINE MIR -55 153 55 2227 77 3 0 chr9 76391203 76391489 -41471138 + AluSc SINE Alu 1 287 -22 2069 106 3 0 chr9 76391751 76392067 -41470560 - AluSx SINE Alu 0 317 1 4160 217 38 4 chr9 76392069 76393012 -41469615 - L1 LINE L1 -1110 5036 4062 721 253 108 57 chr9 76393012 76393309 -41469318 + L2 LINE L2 2992 3303 -10 430 269 46 2 chr9 76393309 76393513 -41469114 - L1MC4a LINE L1 -160 5961 5743 341 273 184 26 chr9 76394971 76395238 -41467389 - L2 LINE L2 -785 2529 2221 516 321 12 0 chr9 76396419 76396581 -41466046 - MIR SINE MIR -10 252 89 209 139 23 0 chr9 76398850 76398893 -41463734 + CT-rich Low_complexity Low_complexity 3 46 0 261 0 0 0 chr9 76399174 76399203 -41463424 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2182 89 0 0 chr9 76399205 76399486 -41463141 - AluSx SINE Alu -31 281 1 387 209 33 136 chr9 76399540 76399706 -41462921 - MIR3 SINE MIR -41 167 31 230 208 21 0 chr9 76400115 76400163 -41462464 - MIR3 SINE MIR -7 201 153 239 269 0 0 chr9 76400165 76400217 -41462410 - MER5B DNA MER1_type -2 176 125 2115 112 3 10 chr9 76400226 76400538 -41462089 + AluSx SINE Alu 1 310 -2 273 118 0 0 chr9 76400538 76400589 -41462038 + (TA)n Simple_repeat Simple_repeat 2 52 0 342 290 28 19 chr9 76400589 76400696 -41461931 - MER5B DNA MER1_type -70 108 1 378 280 42 0 chr9 76400697 76400815 -41461812 - MIR3 SINE MIR -49 159 37 206 332 108 63 chr9 76400902 76401125 -41461502 - L2 LINE L2 -36 3236 3004 292 202 211 28 chr9 76401135 76401244 -41461383 - MER53 DNA DNA 0 189 61 1021 99 7 0 chr9 76401244 76401385 -41461242 + AluSg1 SINE Alu 1 142 -167 184 75 25 25 chr9 76401412 76401452 -41461175 + (TA)n Simple_repeat Simple_repeat 1 40 0 1068 110 49 0 chr9 76401452 76401616 -41461011 + AluSg1 SINE Alu 119 290 -19 540 274 110 27 chr9 76401827 76402046 -41460581 + L2 LINE L2 2583 2819 -495 995 172 18 0 chr9 76402110 76402279 -41460348 - MER5B DNA MER1_type 0 178 7 487 285 132 41 chr9 76402545 76402864 -41459763 + L2 LINE L2 2925 3272 0 738 273 69 47 chr9 76403639 76403802 -41458825 - L1M4 LINE L1 -977 5169 5011 1767 157 7 3 chr9 76403802 76404095 -41458532 - AluJb SINE Alu -18 294 1 738 273 69 47 chr9 76404095 76404337 -41458290 - L1M4 LINE L1 -1135 5011 4755 318 298 25 55 chr9 76404449 76404630 -41457997 - MIR SINE MIR -69 139 18 187 305 63 63 chr9 76405953 76406127 -41456500 + MER5A DNA MER1_type 16 189 0 239 236 56 124 chr9 76406139 76406300 -41456327 - MIR3 SINE MIR -38 170 21 301 291 73 79 chr9 76406890 76407055 -41455572 - MIR SINE MIR -77 185 22 2039 118 0 0 chr9 76407128 76407408 -41455219 + AluSx SINE Alu 1 280 -32 219 103 0 0 chr9 76407411 76407450 -41455177 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 318 371 48 0 chr9 76407568 76407692 -41454935 - L2 LINE L2 -7 3265 3136 346 299 66 80 chr9 76408966 76409377 -41453250 - L2 LINE L2 -6 3266 2862 544 338 152 12 chr9 76409873 76410281 -41452346 - L3 LINE CR1 0 1577 1113 449 329 65 30 chr9 76410400 76410631 -41451996 - MIR SINE MIR -11 251 13 269 279 29 10 chr9 76410726 76410830 -41451797 + L1ME4a LINE L1 5947 6052 -69 * 486 239 108 24 chr9 76410813 76410980 -41451647 - L1ME3A LINE L1 0 6170 5990 764 198 53 53 chr9 76411104 76411291 -41451336 - MER63A DNA MER1_type -1 209 23 583 322 105 0 chr9 76411490 76411661 -41450966 + MER91A DNA MER1_type 8 196 0 293 250 39 39 chr9 76412073 76412177 -41450450 + MIR SINE MIR 68 171 -91 742 273 36 14 chr9 76412264 76412484 -41450143 - MIR SINE MIR -13 249 25 210 301 78 78 chr9 76412635 76412891 -41449736 - L2 LINE L2 -20 3252 2997 344 283 26 0 chr9 76413692 76413805 -41448822 - MIR3 SINE MIR -22 186 71 1103 221 37 40 chr9 76413906 76413941 -41448686 - L1M4 LINE L1 -1838 4308 4274 2108 70 30 30 chr9 76413941 76414240 -41448387 - AluSc SINE Alu -10 299 1 1103 221 37 40 chr9 76414240 76414502 -41448125 - L1M4 LINE L1 -1872 4274 4012 250 173 49 37 chr9 76414540 76414554 -41448073 - HAL1b LINE L1 -10 1338 1325 246 257 122 82 chr9 76414554 76414870 -41447757 - L1ME4a LINE L1 -37 6084 5782 1896 136 0 16 chr9 76414870 76415187 -41447440 - AluSx SINE Alu 0 312 1 246 257 122 82 chr9 76415187 76415248 -41447379 - L1ME4a LINE L1 -339 5782 1257 343 311 0 50 chr9 76415369 76415488 -41447139 + MIR3 SINE MIR 45 157 -51 655 262 0 7 chr9 76415489 76415630 -41446997 - MER5B DNA MER1_type -3 175 36 253 299 140 9 chr9 76415736 76415843 -41446784 + MIR3 SINE MIR 34 154 -54 26 0 0 0 chr9 76415915 76415941 -41446686 + AT_rich Low_complexity Low_complexity 1 26 0 184 296 89 89 chr9 76416178 76416381 -41446246 + L2 LINE L2 3069 3271 -1 25 0 0 0 chr9 76416676 76416701 -41445926 + AT_rich Low_complexity Low_complexity 1 25 0 266 321 79 14 chr9 76417851 76417991 -41444636 + L3 LINE CR1 1427 1575 -2 220 239 104 104 chr9 76418039 76418173 -41444454 - MIR3 SINE MIR -7 201 68 218 260 0 0 chr9 76418170 76418220 -41444407 - L2 LINE L2 -11 3261 3212 * 263 221 90 41 chr9 76418550 76418672 -41443955 - L2 LINE L2 -251 3021 2894 3087 153 71 35 chr9 76419756 76420405 -41442222 - L1MA7 LINE L1 0 6291 5620 2193 94 16 3 chr9 76420451 76420759 -41441868 + AluSq SINE Alu 1 312 -1 779 282 47 17 chr9 76421058 76421292 -41441335 - MIR SINE MIR 0 262 22 185 143 102 82 chr9 76421652 76421701 -41440926 + L2 LINE L2 3223 3272 0 360 298 66 11 chr9 76421877 76422018 -41440609 + MIR3 SINE MIR 15 160 -61 2358 91 0 3 chr9 76422077 76422375 -41440252 + AluSc SINE Alu 1 297 -12 1962 144 7 3 chr9 76422706 76422997 -41439630 + AluSx SINE Alu 1 292 -20 329 363 14 19 chr9 76423891 76424106 -41438521 + HAL1b LINE L1 376 589 -759 632 245 54 0 chr9 76424109 76424293 -41438334 - MIR SINE MIR -30 232 39 1696 158 177 49 chr9 76424516 76424901 -41437726 - Tigger2a DNA MER2_type 0 434 1 397 266 35 35 chr9 76426335 76426478 -41436149 - MIR SINE MIR -89 173 31 607 249 119 11 chr9 76426509 76426686 -41435941 - MER3 DNA MER1_type -1 208 13 338 214 83 0 chr9 76426984 76427068 -41435559 + MIR SINE MIR 59 149 -113 364 298 113 7 chr9 76428089 76428240 -41434387 - L1ME LINE L1 -420 5701 5535 1885 137 28 11 chr9 76428741 76429026 -41433601 - AluSx SINE Alu -22 290 1 290 91 0 0 chr9 76429477 76429521 -41433106 + Alu SINE Alu 262 305 -3 270 319 22 0 chr9 76429529 76429620 -41433007 + MIR SINE MIR 60 152 -110 749 165 147 41 chr9 76432767 76432907 -41429720 - MER58A DNA MER1_type -2196 224 62 1310 193 13 4 chr9 76432907 76433140 -41429487 - MER8 DNA MER2_type 0 239 5 749 165 147 41 chr9 76433140 76433169 -41429458 - MER58A DNA MER1_type -2358 62 37 1882 211 34 34 chr9 76434815 76434890 -41427737 - Charlie4a DNA MER1_type -1456 505 431 1644 165 36 4 chr9 76434890 76435169 -41427458 - AluJb SINE Alu -24 288 1 1882 211 34 34 chr9 76435169 76435595 -41427032 - Charlie4a DNA MER1_type -1529 432 4 212 286 14 14 chr9 76435678 76435748 -41426879 - MIR3 SINE MIR -124 84 15 1359 148 0 5 chr9 76438147 76438350 -41424277 + AluJo SINE Alu 87 288 -24 1853 136 62 4 chr9 76438799 76439072 -41423555 + AluSx SINE Alu 1 289 -23 1971 129 7 11 chr9 76439082 76439368 -41423259 + AluSx SINE Alu 5 289 -23 2079 134 7 0 chr9 76439533 76439824 -41422803 + AluSx SINE Alu 3 295 -17 327 247 0 22 chr9 76440116 76440205 -41422422 + L1MC5 LINE L1 7249 7335 -626 284 146 0 0 chr9 76440216 76440257 -41422370 + MER3 DNA MER1_type 59 99 -110 1172 224 88 24 chr9 76490292 76490622 -41372005 - Charlie1 DNA MER1_type -2410 351 1 305 306 25 6 chr9 76490686 76490846 -41371781 + L1M4 LINE L1 37 199 -6343 1048 269 45 16 chr9 76491192 76491568 -41371059 + L1M4 LINE L1 3986 4372 -2272 452 209 33 72 chr9 76491746 76491833 -41370794 - L1ME LINE L1 -390 5780 5700 2141 77 32 0 chr9 76491833 76492118 -41370509 - AluSp SINE Alu -19 294 1 452 209 33 72 chr9 76492118 76492183 -41370444 - L1ME LINE L1 -470 5700 5634 457 330 23 17 chr9 76492394 76492570 -41370057 + MER5A DNA MER1_type 8 184 -5 328 292 266 5 chr9 76493020 76493212 -41369415 + MIR SINE MIR 21 262 0 282 247 48 42 chr9 76493620 76493786 -41368841 + L1M4 LINE L1 2788 2954 -3192 290 122 0 0 chr9 76493794 76493835 -41368792 + L2 LINE L2 3263 3303 -10 1638 150 52 98 chr9 76493835 76493890 -41368737 + L1MA9 LINE L1 5906 5962 -350 1753 159 3 7 chr9 76493890 76494185 -41368442 + AluJb SINE Alu 6 299 -13 1638 150 52 98 chr9 76494185 76494556 -41368071 + L1MA9 LINE L1 5962 6312 0 332 232 86 81 chr9 76494544 76494927 -41367700 + L1M4 LINE L1 2915 3299 -2847 * 2788 218 50 43 chr9 76495712 76495870 -41366757 + MER63C DNA MER1_type 51 206 -854 2293 73 0 10 chr9 76495870 76496173 -41366454 + AluY SINE Alu 1 300 -11 2788 218 50 43 chr9 76496173 76496966 -41365661 + MER63C DNA MER1_type 206 928 -2 221 200 22 0 chr9 76497300 76497345 -41365282 + MIR3 SINE MIR 117 162 -46 302 271 0 0 chr9 76497850 76497920 -41364707 + MLT1K LTR MaLR 519 588 0 2336 96 0 0 chr9 76497956 76498268 -41364359 + AluSq SINE Alu 1 312 -1 587 259 150 104 chr9 76498281 76498802 -41363825 - MLT1L LTR MaLR -62 553 9 310 250 170 80 chr9 76499425 76499749 -41362878 + L2 LINE L2 2871 3223 -49 1115 140 25 35 chr9 76499827 76499887 -41362740 - MER3 DNA MER1_type 0 209 150 2278 107 0 0 chr9 76499887 76500195 -41362432 + AluSx SINE Alu 1 308 -4 1115 140 25 35 chr9 76500195 76500334 -41362293 - MER3 DNA MER1_type -59 150 12 8452 148 18 9 chr9 76500497 76501904 -41360723 - Ricksha DNA DNA -7 3239 1821 850 198 6 6 chr9 76501902 76502059 -41360568 - Ricksha DNA DNA -2957 289 133 * 469 263 28 60 chr9 76502176 76502346 -41360281 - MIR SINE MIR -64 144 19 628 305 20 15 chr9 76502348 76502551 -41360076 - L3 LINE CR1 -34 1543 1340 363 269 227 21 chr9 76502561 76502843 -41359784 - L3 LINE CR1 -29 1548 1209 222 267 209 29 chr9 76502964 76503069 -41359558 - MIR SINE MIR 0 262 139 502 324 37 0 chr9 76503228 76503364 -41359263 + MIR SINE MIR 15 155 -107 192 226 24 95 chr9 76503771 76503855 -41358772 + MIR SINE MIR 67 145 -63 384 235 102 36 chr9 76504088 76504246 -41358381 - MIR SINE MIR -62 146 22 313 296 74 45 chr9 76504359 76504516 -41358111 + MIR3 SINE MIR 20 180 -54 183 312 117 45 chr9 76504588 76504742 -41357885 - MIR SINE MIR -40 222 58 265 261 25 0 chr9 76504859 76504972 -41357655 - MIR3 SINE MIR -25 183 66 388 202 61 40 chr9 76505411 76505510 -41357117 - MIR SINE MIR -73 135 35 253 317 12 12 chr9 76505648 76505730 -41356897 + MIR SINE MIR 23 104 -158 255 283 0 0 chr9 76506958 76507018 -41355609 + MIR SINE MIR 78 137 -71 1007 264 87 4 chr9 76507617 76507859 -41354768 + MIR SINE MIR 1 262 0 1146 232 89 48 chr9 76508091 76508595 -41354032 + HAL1 LINE L1 1128 1652 -855 1126 218 16 4 chr9 76508595 76508852 -41353775 - MER96B DNA MER1_type? -156 261 2 678 256 51 14 chr9 76508855 76509070 -41353557 + HAL1 LINE L1 1670 1892 -615 877 198 138 19 chr9 76509142 76509205 -41353422 + HAL1 LINE L1 2016 2070 -437 333 0 0 0 chr9 76509205 76509242 -41353385 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 877 198 138 19 chr9 76509242 76509446 -41353181 + HAL1 LINE L1 2070 2315 -192 5699 145 39 20 chr9 76509446 76509749 -41352878 + L1MA9 LINE L1 5099 5395 -917 2123 103 3 16 chr9 76509749 76510061 -41352566 + AluSx SINE Alu 3 310 -2 5699 145 39 20 chr9 76510061 76510451 -41352176 + L1MA9 LINE L1 5395 5776 -536 351 0 0 0 chr9 76510451 76510490 -41352137 + (CA)n Simple_repeat Simple_repeat 2 40 0 5699 145 39 20 chr9 76510490 76510841 -41351786 + L1MA9 LINE L1 5776 6168 -144 447 19 0 0 chr9 76510841 76510893 -41351734 + (CA)n Simple_repeat Simple_repeat 1 52 0 5699 145 39 20 chr9 76510893 76511028 -41351599 + L1MA9 LINE L1 6168 6299 -13 509 246 47 33 chr9 76511025 76511236 -41351391 + HAL1 LINE L1 2294 2507 0 * 260 222 121 0 chr9 76511285 76511384 -41351243 + HAL1 LINE L1 1984 2094 -413 476 285 32 13 chr9 76511827 76511985 -41350642 + MIR3 SINE MIR 24 184 -24 198 312 86 2 chr9 76512020 76512164 -41350463 - MIR SINE MIR -56 152 32 279 189 19 0 chr9 76512620 76512673 -41349954 + MIR SINE MIR 94 147 -61 630 269 16 28 chr9 76513025 76513207 -41349420 + MIR SINE MIR 1 180 -82 183 80 0 0 chr9 76513274 76513299 -41349328 + (ATGGTG)n Simple_repeat Simple_repeat 4 28 0 348 250 0 0 chr9 76513666 76513738 -41348889 + MIR SINE MIR 50 121 -87 618 239 117 52 chr9 76514077 76514307 -41348320 + MIR SINE MIR 6 250 -12 941 279 89 33 chr9 76514324 76514750 -41347877 - MLT1K LTR MaLR -8 580 131 277 270 90 40 chr9 76515210 76515310 -41347317 - MIR3 SINE MIR -23 185 81 546 115 0 0 chr9 76515343 76515430 -41347197 + L1PA13 LINE L1 6062 6148 -15 1540 185 0 30 chr9 76515493 76515795 -41346832 + AluJo SINE Alu 1 293 -19 1295 205 67 31 chr9 76516367 76516694 -41345933 + LTR16C LTR ERVL 152 490 -1 249 333 49 71 chr9 76517165 76517348 -41345279 - MIR3 SINE MIR 0 208 30 536 298 116 5 chr9 76517395 76517610 -41345017 + MIR SINE MIR 9 247 -15 228 291 175 0 chr9 76518017 76518120 -41344507 + MIR3 SINE MIR 67 187 -21 293 85 0 21 chr9 76518999 76519046 -41343581 + AluJ/FLAM SINE Alu 44 89 -213 1519 182 21 4 chr9 76519152 76519432 -41343195 + MER70A LTR ERVL 188 472 0 567 259 65 60 chr9 76519690 76519891 -41342736 - MIR SINE MIR -56 206 5 1473 205 152 37 chr9 76519972 76520401 -41342226 + MLT1D LTR MaLR 27 504 -1 1969 148 40 35 chr9 76520475 76520848 -41341779 + THE1C LTR MaLR 1 375 0 401 273 60 13 chr9 76521367 76521517 -41341110 - MIR SINE MIR -50 212 56 181 140 60 40 chr9 76522251 76522301 -41340326 + MIR SINE MIR 65 115 -147 500 285 127 54 chr9 76522627 76522848 -41339779 - MIR SINE MIR -6 256 20 1924 119 32 0 chr9 76522857 76523142 -41339485 - AluSx SINE Alu -18 294 1 968 233 37 43 chr9 76523150 76523472 -41339155 - L1MC5 LINE L1 -36 7925 7606 407 259 74 45 chr9 76523526 76523733 -41338894 - MIR3 SINE MIR -41 221 14 519 304 57 66 chr9 76524549 76524898 -41337729 + L2 LINE L2 2918 3263 -9 275 284 9 78 chr9 76524903 76525019 -41337608 - MIR SINE MIR -66 196 89 456 313 25 6 chr9 76525583 76525743 -41336884 - MIR SINE MIR -51 211 49 261 256 112 32 chr9 76525778 76525868 -41336759 - MER103 DNA DNA -30 136 32 1973 131 7 0 chr9 76525868 76526159 -41336468 + AluSg SINE Alu 1 293 -17 261 256 112 32 chr9 76526159 76526193 -41336434 - MER103 DNA DNA -134 32 2 206 299 73 29 chr9 76526342 76526479 -41336148 - MIR3 SINE MIR -30 178 36 400 248 13 0 chr9 76526668 76526765 -41335862 - MIR SINE MIR -87 121 22 1228 208 60 3 chr9 76526910 76527028 -41335599 + AluJo SINE Alu 1 111 -201 216 0 0 0 chr9 76527028 76527052 -41335575 + (TAA)n Simple_repeat Simple_repeat 2 25 0 1228 208 60 3 chr9 76527052 76527217 -41335410 + AluJo SINE Alu 111 300 -12 354 202 147 0 chr9 76527252 76527361 -41335266 + MARNA DNA Mariner 243 367 -219 289 260 19 117 chr9 76527432 76527586 -41335041 - L2 LINE L2 -62 3251 3113 2298 74 3 0 chr9 76528052 76528348 -41334279 - AluSp SINE Alu -16 297 1 426 290 65 6 chr9 76528365 76528538 -41334089 - MIR SINE MIR -50 212 35 357 231 120 26 chr9 76529003 76529120 -41333507 + MIR SINE MIR 1 128 -134 612 288 167 14 chr9 76529260 76529614 -41333013 + LTR16C LTR ERVL 82 489 -2 239 326 38 27 chr9 76529812 76530000 -41332627 - MIR SINE MIR -46 216 30 240 213 43 0 chr9 76530159 76530253 -41332374 - L1ME4a LINE L1 -3 6118 6021 1346 211 28 36 chr9 76530427 76530791 -41331836 + L1MC4 LINE L1 6863 7223 -819 334 228 13 0 chr9 76530808 76530887 -41331740 - L1MD3 LINE L1 -29 7966 7887 1809 154 3 3 chr9 76530890 76531189 -41331438 - AluJo SINE Alu -13 299 1 1459 161 31 82 chr9 76531631 76531910 -41330717 - AluJo SINE Alu -1 301 38 2121 114 0 0 chr9 76531910 76532207 -41330420 + AluSx SINE Alu 1 297 -15 1459 161 31 82 chr9 76532207 76532244 -41330383 - AluJo SINE Alu -264 38 1 636 202 16 23 chr9 76533257 76533386 -41329241 + MIR3 SINE MIR 49 176 -32 294 260 20 30 chr9 76533399 76533499 -41329128 - MIR SINE MIR -76 186 88 408 292 43 37 chr9 76533984 76534145 -41328482 - MIR SINE MIR -70 192 31 1088 164 63 5 chr9 76534405 76534612 -41328015 - AluJb SINE Alu -9 303 85 1327 223 140 37 chr9 76534643 76535101 -41327526 - MLT1D LTR MaLR 0 505 1 2068 134 0 6 chr9 76535250 76535564 -41327063 - AluSx SINE Alu 0 312 1 181 295 0 16 chr9 76535599 76535660 -41326967 + MIR SINE MIR 34 93 -115 340 248 32 45 chr9 76535881 76536038 -41326589 + L2 LINE L2 2914 3068 -204 810 173 0 0 chr9 76536232 76536396 -41326231 - FLAM_C SINE Alu 0 164 1 330 245 66 28 chr9 76536422 76536528 -41326099 - MIR3 SINE MIR -4 204 95 1709 139 0 0 chr9 76536676 76536934 -41325693 + AluSx SINE Alu 38 295 -17 207 100 0 0 chr9 76536934 76536964 -41325663 + (GGA)n Simple_repeat Simple_repeat 1 30 0 294 263 82 43 chr9 76537613 76537740 -41324887 + MIR SINE MIR 14 140 -68 387 267 62 41 chr9 76538296 76538442 -41324185 + MIR3 SINE MIR 30 178 -30 5106 168 116 107 chr9 76538660 76539225 -41323402 - L1MD3 LINE L1 -13 7982 7423 537 209 36 72 chr9 76539225 76539364 -41323263 - MLT1F1 LTR MaLR -433 134 1 2855 128 12 44 chr9 76539366 76539868 -41322759 - MER66B LTR ERV1 0 486 1 5106 168 116 107 chr9 76539868 76540653 -41321974 - L1MD3 LINE L1 -572 7423 6478 186 43 0 0 chr9 76540656 76540679 -41321948 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 980 251 75 8 chr9 76540684 76540951 -41321676 - L1MC4a LINE L1 -1201 6607 6323 545 278 19 71 chr9 76540972 76541184 -41321443 + MIR SINE MIR 46 246 -16 377 208 47 22 chr9 76541529 76541639 -41320988 + MIR3 SINE MIR 47 163 -45 3230 162 7 15 chr9 76541709 76542301 -41320326 - L1MC2 LINE L1 0 6344 5758 696 292 47 21 chr9 76542337 76542570 -41320057 + MER102a DNA MER1_type 76 314 -16 747 276 80 22 chr9 76542660 76543080 -41319547 + LTR33 LTR ERVL 39 507 -14 606 291 18 0 chr9 76543088 76543253 -41319374 + MIR SINE MIR 95 262 0 482 294 93 2 chr9 76543530 76543745 -41318882 - MIR SINE MIR -1 261 11 309 279 131 8 chr9 76544254 76544376 -41318251 + MIR SINE MIR 107 243 -19 322 200 55 83 chr9 76544699 76544844 -41317783 - MIR SINE MIR -38 224 84 187 375 33 17 chr9 76544960 76545080 -41317547 - MIR3 SINE MIR -84 124 3 263 345 121 9 chr9 76545696 76545812 -41316815 - L2 LINE L2 0 3272 3144 295 311 39 0 chr9 76545859 76545962 -41316665 + MIR SINE MIR 22 128 -134 813 235 95 14 chr9 76546088 76546309 -41316318 - MIR SINE MIR -4 258 20 614 143 8 0 chr9 76546338 76546457 -41316170 + CT-rich Low_complexity Low_complexity 2 121 0 674 276 115 71 chr9 76546491 76546900 -41315727 - L2 LINE L2 0 3272 2846 200 35 35 0 chr9 76547225 76547254 -41315373 + (TTCA)n Simple_repeat Simple_repeat 2 31 0 882 255 91 40 chr9 76547255 76547915 -41314712 - L2 LINE L2 -13 3300 2601 250 319 70 28 chr9 76548181 76548462 -41314165 + L2 LINE L2 2632 2930 -342 295 206 22 65 chr9 76550202 76550294 -41312333 + MER103 DNA DNA 46 133 -33 1567 148 21 21 chr9 76550336 76550620 -41312007 + AluJo SINE Alu 1 284 -28 219 69 0 0 chr9 76550620 76550649 -41311978 + (AAATG)n Simple_repeat Simple_repeat 2 30 0 1936 115 41 7 chr9 76550790 76551085 -41311542 + AluSq SINE Alu 2 306 -7 354 259 101 70 chr9 76551502 76551660 -41310967 + MIR SINE MIR 29 191 -71 274 241 90 24 chr9 76551969 76552134 -41310493 + Charlie4a DNA MER1_type 238 508 0 242 284 0 0 chr9 76552138 76552212 -41310415 + L1ME4a LINE L1 5755 5828 -293 1851 227 87 54 chr9 76552213 76552856 -41309771 + L1ME3A LINE L1 5501 6164 -6 437 336 60 39 chr9 76552860 76553092 -41309535 + L1ME4a LINE L1 5813 6054 -67 1538 113 41 0 chr9 76553092 76553313 -41309314 + MER30 DNA MER1_type 1 230 0 437 336 60 39 chr9 76553313 76553363 -41309264 + L1ME4a LINE L1 6054 6101 -20 295 223 53 58 chr9 76553380 76553494 -41309133 + L1ME4a LINE L1 5931 6045 -76 1657 177 3 22 chr9 76553494 76553810 -41308817 - AluJo SINE Alu -2 310 1 295 223 53 58 chr9 76553810 76553883 -41308744 + L1ME4a LINE L1 6045 6117 -4 1158 217 62 43 chr9 76553924 76554279 -41308348 - L1ME2 LINE L1 -9 6155 5799 910 124 8 0 chr9 76554672 76554801 -41307826 + THE1C LTR MaLR 246 375 0 6336 128 67 6 chr9 76554801 76555179 -41307448 + THE1C-int LTR MaLR 1 354 -1226 2106 122 0 3 chr9 76555179 76555483 -41307144 + AluSx SINE Alu 1 303 -9 6336 128 67 6 chr9 76555483 76556116 -41306511 + THE1C-int LTR MaLR 354 1074 -506 625 184 79 129 chr9 76556115 76556231 -41306396 + HAL1 LINE L1 2244 2364 -143 * 1647 108 35 62 chr9 76556231 76556545 -41306082 + AluSg SINE Alu 1 306 0 625 184 79 129 chr9 76556545 76556705 -41305922 + HAL1 LINE L1 2364 2507 0 658 299 51 51 chr9 76556707 76556981 -41305646 + L3 LINE CR1 1303 1576 -1 184 393 0 56 chr9 76557030 76557137 -41305490 - L2 LINE L2 0 3272 3172 566 305 32 5 chr9 76557142 76557332 -41305295 - MIR3 SINE MIR -7 201 7 180 0 0 0 chr9 76557764 76557784 -41304843 + (T)n Simple_repeat Simple_repeat 1 20 0 1053 172 28 28 chr9 76557910 76558125 -41304502 + MER20 DNA MER1_type 1 215 -4 243 237 17 0 chr9 76558134 76558193 -41304434 - MLT1K LTR MaLR -12 576 517 1981 127 3 7 chr9 76558250 76558549 -41304078 + AluJo SINE Alu 1 298 -14 310 236 113 87 chr9 76558643 76558838 -41303789 - MLT1K LTR MaLR -180 408 209 389 300 131 35 chr9 76559142 76559515 -41303112 + L1ME LINE L1 5410 5818 -303 2286 237 54 16 chr9 76559960 76560493 -41302134 + MLT1H1 LTR MaLR 6 551 -4 1765 174 102 152 chr9 76560497 76561125 -41301502 + L1MC5 LINE L1 6976 7634 -327 2096 109 6 16 chr9 76561125 76561438 -41301189 + AluSx SINE Alu 1 310 -2 1966 126 3 28 chr9 76561440 76561757 -41300870 + AluSx SINE Alu 2 310 -2 1765 174 102 152 chr9 76561757 76561830 -41300797 + L1MC5 LINE L1 7635 7710 -251 234 0 0 0 chr9 76561830 76561856 -41300771 + (TG)n Simple_repeat Simple_repeat 2 27 0 1765 174 102 152 chr9 76561856 76562162 -41300465 + L1MC5 LINE L1 7710 7936 -25 635 261 139 13 chr9 76562765 76562995 -41299632 + MIR SINE MIR 2 260 -2 213 306 65 75 chr9 76563742 76563928 -41298699 - L2 LINE L2 -173 3099 2916 381 229 48 19 chr9 76564387 76564492 -41298135 + L1MEd LINE L1 27 134 -5985 899 167 71 0 chr9 76564516 76564684 -41297943 - L1PB4 LINE L1 -13 6143 5964 464 284 125 59 chr9 76565089 76565480 -41297147 - L2 LINE L2 -1 3271 2855 2478 137 0 0 chr9 76565707 76566072 -41296555 + MER47A DNA MER2_type 2 366 0 579 194 9 19 chr9 76566228 76566336 -41296291 + MER81 DNA DNA 1 107 -7 307 303 181 16 chr9 76566736 76566924 -41295703 + L2 LINE L2 2168 2386 -928 588 363 24 4 chr9 76567083 76567331 -41295296 - L2 LINE L2 -337 2977 2725 1893 173 74 5 chr9 76567335 76567781 -41294846 - MLT2B1 LTR ERVL 0 520 1 4473 289 93 72 chr9 76567786 76569752 -41292875 - L2 LINE L2 -593 2721 688 2878 82 0 5 chr9 76569752 76570129 -41292498 - THE1C LTR MaLR 0 375 1 4473 289 93 72 chr9 76570129 76570744 -41291883 - L2 LINE L2 -2626 688 87 564 188 8 0 chr9 76571197 76571314 -41291313 + MER53 DNA DNA 14 131 -58 1291 226 157 26 chr9 76571375 76571790 -41290837 - MLT2B1 LTR ERVL -51 469 1 7889 23 0 268 chr9 76571849 76573559 -41289068 + SVA Other Other 128 1378 -8 439 327 13 7 chr9 76573562 76573715 -41288912 + L1M4 LINE L1 3221 3374 -2772 2058 118 0 0 chr9 76573773 76574061 -41288566 + AluSx SINE Alu 1 288 -24 330 289 114 30 chr9 76574156 76574322 -41288305 - MIR SINE MIR -78 184 5 26 64 0 0 chr9 76574720 76574767 -41287860 + AT_rich Low_complexity Low_complexity 1 47 0 414 0 0 0 chr9 76575002 76575048 -41287579 + (A)n Simple_repeat Simple_repeat 1 46 0 241 261 45 45 chr9 76575330 76575441 -41287186 + L2 LINE L2 3162 3272 0 2613 184 40 43 chr9 76576535 76577068 -41285559 - LTR9B LTR ERV1 -84 560 28 2735 26 3 0 chr9 76577068 76577372 -41285255 - AluY SINE Alu -6 305 1 2613 184 40 43 chr9 76577372 76577394 -41285233 - LTR9B LTR ERV1 -616 28 7 413 169 0 14 chr9 76577400 76577471 -41285156 - HUERS-P3 LTR ERV1 -1 8918 8849 2970 150 62 39 chr9 76577609 76578222 -41284405 - L1MD1 LINE L1 -35 6207 5581 580 166 0 115 chr9 76578233 76578372 -41284255 + FLAM_A SINE Alu 12 134 -8 811 197 51 34 chr9 76578375 76578553 -41284074 + AluJo SINE Alu 92 272 -40 2274 144 25 9 chr9 76578559 76579136 -41283491 - L1P5 LINE L1 -546 5605 5021 1139 147 82 17 chr9 76579195 76579426 -41283201 - L1MDa LINE L1 -6093 447 202 225 263 125 83 chr9 76579505 76579745 -41282882 - L1MEd LINE L1 -5811 308 59 348 229 15 76 chr9 76580307 76580438 -41282189 + LTR67 LTR ERVL 433 555 -2 1523 132 5 9 chr9 76580600 76580819 -41281808 + AluSx SINE Alu 1 218 -94 234 0 0 0 chr9 76580831 76580857 -41281770 + (A)n Simple_repeat Simple_repeat 1 26 0 885 350 87 5 chr9 76580857 76581422 -41281205 - L3 LINE CR1 -37 1540 930 1279 177 14 0 chr9 76581869 76582089 -41280538 + L1M4 LINE L1 4770 4992 -1154 * 9070 204 50 50 chr9 76582088 76582291 -41280336 + L1M3 LINE L1 2631 2832 -3348 1959 156 0 0 chr9 76582291 76582596 -41280031 + AluSx SINE Alu 1 305 0 9070 204 50 50 chr9 76582596 76582874 -41279753 + L1M3 LINE L1 2832 3108 -3072 2388 102 3 3 chr9 76582874 76583187 -41279440 - AluSq SINE Alu 0 313 1 9070 204 50 50 chr9 76583187 76584850 -41277777 + L1M3 LINE L1 3108 4779 -1401 1677 170 0 61 chr9 76584850 76585180 -41277447 + AluJo SINE Alu 3 312 0 9070 204 50 50 chr9 76585180 76586012 -41276615 + L1M3 LINE L1 4779 5609 -571 2104 116 0 0 chr9 76586257 76586555 -41276072 + AluSx SINE Alu 9 306 0 232 324 41 24 chr9 76587490 76587660 -41274967 + MIR SINE MIR 90 262 0 216 213 213 0 chr9 76587721 76587796 -41274831 + MIR3 SINE MIR 75 165 -43 1079 113 0 0 chr9 76587912 76588090 -41274537 - AluSg/x SINE Alu 0 317 140 686 265 112 30 chr9 76588097 76588365 -41274262 - MLT1L LTR MaLR -325 290 1 2329 86 14 0 chr9 76588616 76588907 -41273720 + AluSp SINE Alu 1 295 -18 288 255 56 19 chr9 76589057 76589218 -41273409 - L2 LINE L2 -587 2727 2561 198 255 42 0 chr9 76590296 76590374 -41272253 + MIR SINE MIR 43 121 -95 317 235 0 0 chr9 76591311 76591379 -41271248 - MER5A DNA MER1_type -80 109 42 270 260 83 31 chr9 76591544 76591640 -41270987 - MIR SINE MIR -67 141 41 227 288 0 0 chr9 76591743 76591809 -41270818 + T-rich Low_complexity Low_complexity 1 66 0 186 330 104 0 chr9 76593015 76593130 -41269497 - MIR SINE MIR -50 212 86 1371 174 53 4 chr9 76593546 76593827 -41268800 + MER33 DNA MER1_type 30 324 0 21 0 0 0 chr9 76593895 76593916 -41268711 + AT_rich Low_complexity Low_complexity 1 21 0 324 48 0 0 chr9 76596005 76596047 -41266580 + (CGG)n Simple_repeat Simple_repeat 2 43 0 29 0 0 0 chr9 76596407 76596436 -41266191 + GC_rich Low_complexity Low_complexity 1 29 0 25 51 0 0 chr9 76597293 76597332 -41265295 + GC_rich Low_complexity Low_complexity 1 39 0 180 333 18 0 chr9 76597710 76597821 -41264806 - MIR3 SINE MIR -54 154 42 23 0 0 0 chr9 76598505 76598528 -41264099 + GC_rich Low_complexity Low_complexity 1 23 0 1028 146 12 0 chr9 76599209 76599380 -41263247 + FAM SINE Alu 2 174 -1 198 298 18 0 chr9 76600991 76601048 -41261579 + MIR SINE MIR 86 143 -65 359 268 57 0 chr9 76603130 76603253 -41259374 + MIR SINE MIR 46 175 -87 181 225 0 0 chr9 76603344 76603384 -41259243 + MIR SINE MIR 40 79 -129 348 217 69 86 chr9 76604732 76604762 -41257865 + L3 LINE CR1 635 664 -913 1545 143 0 0 chr9 76604762 76604992 -41257635 - MER30 DNA MER1_type 0 230 1 348 217 69 86 chr9 76604992 76605136 -41257491 + L3 LINE CR1 664 806 -771 242 332 75 15 chr9 76605419 76605618 -41257009 - L1ME LINE L1 -346 5775 5565 2106 181 70 89 chr9 76605622 76606138 -41256489 - L1ME1 LINE L1 -86 6080 5555 2315 105 17 30 chr9 76606138 76606506 -41256121 - L1PA14 LINE L1 0 6161 5829 2378 88 7 3 chr9 76606506 76606812 -41255815 - AluSc SINE Alu -2 307 1 2315 105 17 30 chr9 76606812 76606837 -41255790 - L1PA14 LINE L1 -332 5829 5805 2106 181 70 89 chr9 76606837 76607047 -41255580 - L1ME1 LINE L1 -611 5555 5342 1554 228 124 40 chr9 76607047 76607547 -41255080 - MLT1F LTR MaLR 0 542 1 2106 181 70 89 chr9 76607547 76608070 -41254557 - L1ME1 LINE L1 -824 5342 4855 2089 146 0 0 chr9 76608356 76608657 -41253970 - AluSx SINE Alu -11 301 1 270 358 40 13 chr9 76608877 76609028 -41253599 + L2 LINE L2 2471 2625 -689 4674 162 50 17 chr9 76609028 76610371 -41252256 - L1MB7 LINE L1 -1 6183 4799 630 180 8 8 chr9 76610360 76610482 -41252145 - L1MB7 LINE L1 -2289 3857 3736 * 934 114 13 7 chr9 76610482 76610631 -41251996 - L1MC2 LINE L1 -120 6224 6075 288 106 0 0 chr9 76610631 76610678 -41251949 - L1MB7 LINE L1 -3106 3040 2994 3047 181 22 40 chr9 76610678 76610777 -41251850 - L1ME1 LINE L1 -1345 4801 4702 2391 86 10 0 chr9 76610777 76611081 -41251546 - AluSp SINE Alu -6 307 1 3047 181 22 40 chr9 76611081 76611701 -41250926 - L1ME1 LINE L1 -1444 4702 4095 * 6230 150 19 19 chr9 76611700 76611929 -41250698 + L1PA16 LINE L1 4099 4327 -1839 803 169 0 0 chr9 76611929 76612053 -41250574 + FLAM_C SINE Alu 1 124 -9 6230 150 19 19 chr9 76612053 76613896 -41248731 + L1PA16 LINE L1 4327 6163 -3 2459 207 25 33 chr9 76613883 76614483 -41248144 - L1ME1 LINE L1 -2030 4116 3522 * 3950 117 31 10 chr9 76614489 76614522 -41248105 + Tigger4(Zombi) DNA MER2_type 2111 2142 -589 1825 153 0 53 chr9 76614522 76614842 -41247785 - AluJo SINE Alu -9 303 1 3950 117 31 10 chr9 76614842 76615416 -41247211 + Tigger4(Zombi) DNA MER2_type 2142 2731 0 273 196 0 0 chr9 76615421 76615477 -41247150 + (TATG)n Simple_repeat Simple_repeat 1 56 0 404 270 36 66 chr9 76616760 76616971 -41245656 + MIR3 SINE MIR 15 212 -50 301 307 107 13 chr9 76617211 76617361 -41245266 - MIR3 SINE MIR -11 197 34 192 309 15 0 chr9 76617421 76617489 -41245138 - L2 LINE L2 -1 3271 3203 1393 187 34 8 chr9 76617651 76617918 -41244709 + AluJo SINE Alu 23 296 -16 241 297 0 0 chr9 76618006 76618070 -41244557 - MIR SINE MIR -60 148 85 466 185 82 41 chr9 76618147 76618293 -41244334 + MIR SINE MIR 20 171 -91 225 221 31 16 chr9 76618576 76618703 -41243924 + CT-rich Low_complexity Low_complexity 5 133 0 641 142 97 102 chr9 76619475 76619651 -41242976 - L1MB5 LINE L1 0 6174 6000 212 264 38 0 chr9 76619864 76619917 -41242710 + CT-rich Low_complexity Low_complexity 5 59 0 180 181 26 60 chr9 76619933 76620049 -41242578 + (TCTA)n Simple_repeat Simple_repeat 4 115 0 472 221 25 91 chr9 76620152 76620315 -41242312 + MER5B DNA MER1_type 4 131 -47 2143 100 23 20 chr9 76620315 76620616 -41242011 + AluSc SINE Alu 1 302 -7 472 221 25 91 chr9 76620616 76620661 -41241966 + MER5B DNA MER1_type 131 177 -1 1110 227 112 72 chr9 76620956 76621529 -41241098 - L1MC5 LINE L1 -26 7935 7340 1534 270 81 42 chr9 76621548 76622450 -41240177 - L1M4 LINE L1 -1602 4544 3679 1705 201 52 9 chr9 76622450 76622798 -41239829 - MLT1A1 LTR MaLR 0 365 3 1534 270 81 42 chr9 76622798 76622814 -41239813 - L1M4 LINE L1 -2467 3679 3665 2099 131 0 10 chr9 76622814 76623127 -41239500 - AluSx SINE Alu -2 310 1 1534 270 81 42 chr9 76623127 76623284 -41239343 - L1M4 LINE L1 -2481 3665 3426 * 5747 171 55 47 chr9 76623280 76623879 -41238748 - L1MC2 LINE L1 0 6344 5751 1165 173 72 129 chr9 76623879 76624266 -41238361 - MLT1A1 LTR MaLR 0 365 1 5747 171 55 47 chr9 76624266 76625295 -41237332 - L1MC2 LINE L1 -593 5751 4699 672 152 64 16 chr9 76625295 76625420 -41237207 - FLAM_C SINE Alu -2 131 1 5747 171 55 47 chr9 76625420 76626003 -41236624 - L1MC2 LINE L1 -1645 4699 4122 777 215 5 46 chr9 76625995 76626190 -41236437 - L1MC2 LINE L1 -3314 2832 2646 * 236 313 69 47 chr9 76626450 76626897 -41235730 - HAL1b LINE L1 -794 554 98 1665 281 21 7 chr9 76626962 76627386 -41235241 + LTR16C LTR ERVL 62 491 0 587 208 83 0 chr9 76627391 76627559 -41235068 - L1ME LINE L1 -382 5739 5558 1486 167 93 48 chr9 76627777 76627854 -41234773 + MSTD LTR MaLR 1 73 -323 2221 99 3 0 chr9 76627854 76628164 -41234463 - AluSx SINE Alu 0 311 1 1486 167 93 48 chr9 76628164 76628462 -41234165 + MSTD LTR MaLR 73 394 -2 241 326 11 0 chr9 76628855 76628944 -41233683 - MIR SINE MIR -70 138 49 392 289 132 0 chr9 76629291 76629412 -41233215 + L2 LINE L2 3136 3272 0 373 296 138 5 chr9 76629756 76629945 -41232682 - MIR SINE MIR -2 260 47 456 298 24 6 chr9 76630124 76630292 -41232335 + MIR SINE MIR 55 225 -37 249 83 0 0 chr9 76630643 76630679 -41231948 + (CA)n Simple_repeat Simple_repeat 2 37 0 219 139 0 0 chr9 76630769 76630805 -41231822 + (CTCA)n Simple_repeat Simple_repeat 4 39 0 2459 88 7 0 chr9 76630969 76631275 -41231352 - AluSc SINE Alu -1 308 1 30 69 0 0 chr9 76631333 76631391 -41231236 + AT_rich Low_complexity Low_complexity 1 58 0 1430 133 4 0 chr9 76631589 76631823 -41230804 + L1 LINE L1 4423 4657 -1489 * 1675 154 3 0 chr9 76631822 76632108 -41230519 - L1 LINE L1 -1735 4411 4125 573 297 120 29 chr9 76632524 76632939 -41229688 + L2 LINE L2 2610 3052 -261 247 259 35 86 chr9 76633014 76633130 -41229497 + MER91C DNA MER1_type 31 140 0 21 57 0 0 chr9 76633230 76633265 -41229362 + AT_rich Low_complexity Low_complexity 1 35 0 532 239 13 45 chr9 76633360 76633515 -41229112 - MIR SINE MIR 0 262 113 3641 217 20 45 chr9 76633869 76634836 -41227791 + L1MB4 LINE L1 2291 3280 -2866 2229 132 0 0 chr9 76634836 76635147 -41227480 + AluY SINE Alu 1 311 0 3641 217 20 45 chr9 76635147 76635176 -41227451 + L1MB4 LINE L1 3280 3308 -2838 430 91 0 0 chr9 76635176 76635242 -41227385 + Alu SINE Alu 253 318 0 3641 217 20 45 chr9 76635242 76635552 -41227075 + L1MB4 LINE L1 3308 3543 -2603 * 5793 171 18 34 chr9 76635548 76636555 -41226072 + L1MB4 LINE L1 4094 5065 -1109 1894 152 3 3 chr9 76636555 76636863 -41225764 - AluJb SINE Alu 0 308 1 5793 171 18 34 chr9 76636863 76637574 -41225053 + L1MB4 LINE L1 5065 5786 -388 189 0 0 0 chr9 76637583 76637604 -41225023 + (TA)n Simple_repeat Simple_repeat 1 21 0 279 201 29 29 chr9 76637607 76637712 -41224915 + L1MC4 LINE L1 1996 6989 -1333 2107 168 18 13 chr9 76637759 76638157 -41224470 + L1MB4 LINE L1 5780 6179 -1 255 228 35 0 chr9 76638857 76638914 -41223713 - L2 LINE L2 -21 3292 3234 1573 182 35 11 chr9 76638920 76639267 -41223360 + L1MB7 LINE L1 5817 6171 -13 2418 99 3 0 chr9 76639286 76639598 -41223029 + AluSq SINE Alu 1 313 0 331 286 37 25 chr9 76640768 76640929 -41221698 - MIR SINE MIR 0 262 100 350 216 118 0 chr9 76641413 76641515 -41221112 - MIR SINE MIR -129 133 20 514 212 123 18 chr9 76641532 76641702 -41220925 + MER113 DNA MER1_type? 5 192 -329 23 0 0 0 chr9 76641702 76641725 -41220902 + AT_rich Low_complexity Low_complexity 1 23 0 283 280 76 30 chr9 76642027 76642159 -41220468 - MLT1J2 LTR MaLR -312 138 1 555 245 31 31 chr9 76642165 76642324 -41220303 - MIR SINE MIR -79 183 25 621 213 38 25 chr9 76642400 76642560 -41220067 - MLT1D LTR MaLR -339 166 5 188 246 200 0 chr9 76643258 76643323 -41219304 + MIR SINE MIR 40 117 -91 1160 211 16 0 chr9 76643549 76643795 -41218832 - MIR SINE MIR -12 250 1 445 273 52 14 chr9 76643916 76644102 -41218525 + MIR SINE MIR 1 188 -74 199 28 56 28 chr9 76644103 76644139 -41218488 + (TAAAA)n Simple_repeat Simple_repeat 4 40 0 213 39 0 0 chr9 76644374 76644400 -41218227 + (TG)n Simple_repeat Simple_repeat 2 27 0 378 247 31 68 chr9 76644444 76644606 -41218021 + MIR3 SINE MIR 18 173 -35 24 32 0 0 chr9 76644848 76644879 -41217748 + AT_rich Low_complexity Low_complexity 1 31 0 356 269 25 0 chr9 76645066 76645185 -41217442 - L2 LINE L2 -1180 2134 2013 2518 74 0 7 chr9 76645312 76645622 -41217005 - AluSg SINE Alu -2 308 1 22 0 0 0 chr9 76645666 76645688 -41216939 + AT_rich Low_complexity Low_complexity 1 22 0 238 176 0 29 chr9 76646058 76646126 -41216501 + (TG)n Simple_repeat Simple_repeat 1 66 0 311 238 33 0 chr9 76646344 76646458 -41216169 - MIR SINE MIR -74 134 27 193 358 32 11 chr9 76646480 76646670 -41215957 - MIR SINE MIR -22 240 47 23 33 0 0 chr9 76646810 76646840 -41215787 + GC_rich Low_complexity Low_complexity 1 30 0 24 53 0 0 chr9 76646997 76647035 -41215592 + GC_rich Low_complexity Low_complexity 1 38 0 311 259 12 36 chr9 76647141 76647392 -41215235 + CT-rich Low_complexity Low_complexity 1 244 0 2504 65 0 7 chr9 76647402 76647712 -41214915 - AluSg SINE Alu -2 308 1 1106 139 74 0 chr9 76647740 76647942 -41214685 - L1MB2 LINE L1 -2 6169 5953 222 264 19 0 chr9 76647974 76648027 -41214600 + CT-rich Low_complexity Low_complexity 2 55 0 535 233 7 60 chr9 76648393 76648567 -41214060 - MIR SINE MIR -52 210 45 690 70 0 0 chr9 76648809 76648895 -41213732 - AluSp/q SINE Alu -16 297 212 336 276 44 24 chr9 76649136 76649270 -41213357 + MLT1I LTR MaLR 2 139 -270 1868 167 3 10 chr9 76649270 76649582 -41213045 - L1M4 LINE L1 -432 5742 5433 567 262 133 13 chr9 76649571 76649888 -41212739 - L1MEc LINE L1 -4745 1818 1464 * 1125 215 16 48 chr9 76649883 76650194 -41212433 - L1MB8 LINE L1 0 6178 5878 423 98 0 0 chr9 76650196 76650257 -41212370 + (TCCC)n Simple_repeat Simple_repeat 4 64 0 2393 102 0 0 chr9 76650260 76650573 -41212054 - AluSq SINE Alu 0 313 1 313 258 0 0 chr9 76650574 76650636 -41211991 - L1MEc LINE L1 -5059 1325 1264 763 136 45 19 chr9 76650636 76650790 -41211837 + Charlie4 DNA MER1_type 1795 1952 -9 318 143 0 0 chr9 76651440 76651482 -41211145 + (T)n Simple_repeat Simple_repeat 1 42 0 181 261 68 23 chr9 76651825 76651913 -41210714 - L2 LINE L2 -208 3064 2973 1301 263 129 7 chr9 76652113 76652693 -41209934 - L1ME3A LINE L1 -5 6165 5476 340 322 66 16 chr9 76652941 76653183 -41209444 - L2 LINE L2 -932 2382 2129 245 227 171 0 chr9 76653464 76653552 -41209075 - L3 LINE CR1 -78 1499 1397 939 129 0 0 chr9 76654086 76654218 -41208409 + AluSq/x SINE Alu 1 132 -181 2159 121 10 3 chr9 76654222 76654561 -41208066 + AluSg SINE Alu 1 341 0 2333 101 0 3 chr9 76654631 76654929 -41207698 - AluSx SINE Alu -15 297 1 2229 138 0 0 chr9 76655018 76655330 -41207297 + AluSx SINE Alu 1 312 0 294 293 0 60 chr9 76655332 76655482 -41207145 - HAL1 LINE L1 -44 2463 2323 506 213 43 171 chr9 76655482 76655717 -41206910 + MLT1J1 LTR MaLR 1 184 -262 2193 123 10 3 chr9 76655717 76656025 -41206602 - AluSx SINE Alu -2 310 1 506 213 43 171 chr9 76656025 76656117 -41206510 + MLT1J1 LTR MaLR 184 286 -160 1608 130 157 0 chr9 76656117 76656378 -41206249 + AluSx SINE Alu 1 302 0 227 234 16 16 chr9 76656474 76656538 -41206089 + MLT1J1 LTR MaLR 364 427 -19 251 265 96 74 chr9 76656587 76656817 -41205810 - MLT1J LTR MaLR -46 465 231 1062 208 21 30 chr9 76656868 76657104 -41205523 - AluJo SINE Alu -76 236 3 237 248 27 16 chr9 76657146 76657242 -41205385 - MLT1J1 LTR MaLR -305 141 50 2358 82 3 7 chr9 76657387 76657679 -41204948 - AluSq SINE Alu -21 292 2 1475 251 96 2 chr9 76657938 76658416 -41204211 - HAL1 LINE L1 -853 1654 1132 240 244 47 0 chr9 76658616 76658702 -41203925 - L1MEd LINE L1 -5986 133 44 479 70 0 28 chr9 76658877 76658948 -41203679 + MER41B LTR ERV1 480 548 -87 1706 185 6 13 chr9 76658990 76659304 -41203323 + AluJb SINE Alu 1 312 0 3656 166 35 36 chr9 76659418 76660605 -41202022 + L1MB7 LINE L1 4844 6105 -69 1719 181 10 7 chr9 76660605 76660893 -41201734 + AluJo SINE Alu 1 289 -23 3656 166 35 36 chr9 76660893 76660954 -41201673 + L1MB7 LINE L1 6105 6165 -9 1708 82 0 0 chr9 76660954 76661160 -41201467 - AluSg/x SINE Alu -10 300 95 2930 141 35 14 chr9 76661160 76661391 -41201236 - Tigger3b DNA MER2_type -2536 492 267 1675 164 29 35 chr9 76661391 76661702 -41200925 - AluJb SINE Alu -3 309 1 2930 141 35 14 chr9 76661702 76661952 -41200675 - Tigger3b DNA MER2_type -2761 267 1 1508 154 4 40 chr9 76662414 76662667 -41199960 + AluJo SINE Alu 54 297 -15 864 160 0 71 chr9 76662731 76662785 -41199842 + Tigger1 DNA MER2_type 1 57 -2361 2877 13 0 0 chr9 76662785 76663091 -41199536 - AluYb8 SINE Alu -12 306 1 864 160 0 71 chr9 76663091 76663205 -41199422 + Tigger1 DNA MER2_type 57 157 -2261 819 138 148 71 chr9 76663197 76663220 -41199407 + Tigger1 DNA MER2_type 2205 2225 -193 * 1573 100 33 8 chr9 76663220 76663460 -41199167 - L1MA1 LINE L1 0 6302 6057 819 138 148 71 chr9 76663460 76663632 -41198995 + Tigger1 DNA MER2_type 2225 2415 -3 215 200 0 0 chr9 76663654 76663689 -41198938 + (CA)n Simple_repeat Simple_repeat 2 36 0 1827 142 7 7 chr9 76663697 76663979 -41198648 - AluSx SINE Alu -30 282 1 2159 131 0 0 chr9 76664571 76664862 -41197765 - AluSx SINE Alu -21 291 1 1447 193 130 27 chr9 76665946 76666277 -41196350 - MLT1A1 LTR MaLR 0 365 1 1862 161 23 3 chr9 76667168 76667467 -41195160 - AluSx SINE Alu -7 305 1 203 316 25 0 chr9 76668174 76668253 -41194374 + (CCCCAG)n Simple_repeat Simple_repeat 4 84 0 1184 225 16 10 chr9 76670059 76670366 -41192261 - L1MDb LINE L1 -2697 3709 3401 1649 233 71 62 chr9 76670391 76670510 -41192117 - L1MDb LINE L1 -4780 1626 1510 1530 168 35 18 chr9 76670510 76670796 -41191831 - AluJb SINE Alu -8 304 14 1649 233 71 62 chr9 76670796 76671382 -41191245 - L1MDb LINE L1 -4896 1510 949 2005 182 15 0 chr9 76671382 76671722 -41190905 - MER7A DNA MER2_type -3 343 1 1649 233 71 62 chr9 76671722 76671877 -41190750 - L1MDb LINE L1 -5457 949 797 2162 110 4 0 chr9 76672887 76673197 -41189430 - AluSx SINE Alu 0 311 1 737 203 124 0 chr9 76673727 76673803 -41188824 - MER58C DNA MER1_type -2220 200 135 207 0 0 0 chr9 76673803 76673826 -41188801 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 737 203 124 0 chr9 76673826 76673926 -41188701 - MER58C DNA MER1_type -2285 135 2 974 155 0 58 chr9 76674241 76674415 -41188212 - AluJ SINE Alu -13 299 136 879 160 44 44 chr9 76674724 76674905 -41187722 - AluJ SINE Alu -14 298 118 599 217 17 0 chr9 76674950 76675070 -41187557 - AluJ SINE Alu -176 126 5 2530 57 3 0 chr9 76675225 76675524 -41187103 - AluY SINE Alu -11 300 1 723 171 0 0 chr9 76675807 76675953 -41186674 - AluSg/x SINE Alu 0 318 173 1876 150 6 29 chr9 76675990 76676303 -41186324 + AluJb SINE Alu 1 306 -6 1018 130 86 0 chr9 76676303 76676466 -41186161 + AluJb SINE Alu 128 307 -5 211 296 56 37 chr9 76676664 76676772 -41185855 - MIR SINE MIR -76 132 23 238 181 167 0 chr9 76676985 76677057 -41185570 + MIR SINE MIR 28 111 -151 186 167 0 0 chr9 76677929 76677965 -41184662 + (TG)n Simple_repeat Simple_repeat 2 37 0 416 290 216 47 chr9 76678353 76678677 -41183950 + L3 LINE CR1 1154 1547 -30 2293 100 0 13 chr9 76678677 76678987 -41183640 - AluSx SINE Alu -6 306 1 416 290 216 47 chr9 76678987 76679024 -41183603 + L3 LINE CR1 1547 1576 -1 573 211 63 84 chr9 76679172 76679362 -41183265 + L1MD2 LINE L1 6173 6358 -1 1699 171 7 7 chr9 76679372 76679677 -41182950 + AluJo SINE Alu 3 307 -5 2279 85 34 0 chr9 76680197 76680491 -41182136 + AluSg SINE Alu 1 304 -6 630 258 4 61 chr9 76682108 76682259 -41180368 - MARNA DNA Mariner -208 378 243 2032 110 23 33 chr9 76682259 76682559 -41180068 + AluSg SINE Alu 1 297 -13 630 258 4 61 chr9 76682559 76682636 -41179991 - MARNA DNA Mariner -343 243 163 1347 97 5 20 chr9 76683060 76683256 -41179371 + AluSg/x SINE Alu 118 310 0 444 249 144 12 chr9 76683549 76683722 -41178905 + MER91A DNA MER1_type 1 196 0 1108 229 86 94 chr9 76684061 76684382 -41178245 + L2 LINE L2 2734 3045 -268 1735 157 3 33 chr9 76684382 76684515 -41178112 + AluJb SINE Alu 1 136 -176 2449 73 0 0 chr9 76684515 76684816 -41177811 + AluY SINE Alu 1 301 -10 1735 157 3 33 chr9 76684816 76684988 -41177639 + AluJb SINE Alu 136 297 -15 1108 229 86 94 chr9 76684988 76685255 -41177372 + L2 LINE L2 3045 3313 0 2019 132 17 0 chr9 76685348 76685636 -41176991 - AluSx SINE Alu -19 293 1 199 159 159 63 chr9 76686306 76686369 -41176258 - MIR3 SINE MIR -52 156 88 193 331 84 14 chr9 76687138 76687280 -41175347 + L2 LINE L2 2939 3090 -182 186 301 68 0 chr9 76687398 76687471 -41175156 + L2 LINE L2 3194 3271 -1 2316 224 58 38 chr9 76687480 76688061 -41174566 + MLT1E LTR MaLR 1 593 0 248 333 40 0 chr9 76688435 76688510 -41174117 + MIR SINE MIR 70 147 -115 357 273 15 68 chr9 76688665 76688797 -41173830 + L2 LINE L2 3183 3307 -6 213 358 95 11 chr9 76690111 76690206 -41172421 + L2 LINE L2 3163 3265 -7 371 265 68 31 chr9 76690209 76690371 -41172256 - MIR SINE MIR -3 259 92 787 299 102 39 chr9 76690596 76691135 -41171492 + L1MC4a LINE L1 5313 5885 -1923 912 196 139 0 chr9 76691685 76691879 -41170748 - MER58A DNA MER1_type -3 221 1 212 346 53 30 chr9 76691880 76692013 -41170614 + L3 LINE CR1 1307 1442 -135 799 77 10 0 chr9 76692074 76692178 -41170449 + HY1 scRNA scRNA 1 105 -7 24 0 0 0 chr9 76692178 76692202 -41170425 + AT_rich Low_complexity Low_complexity 1 24 0 1258 157 18 18 chr9 76692223 76692440 -41170187 + AluJb SINE Alu 85 301 -11 205 184 0 0 chr9 76692891 76692929 -41169698 + (CATA)n Simple_repeat Simple_repeat 3 40 0 1917 96 29 29 chr9 76693082 76693362 -41169265 - AluSg SINE Alu -4 306 27 805 124 71 0 chr9 76693362 76693475 -41169152 - AluSg SINE Alu -189 121 1 508 262 32 0 chr9 76693763 76693889 -41168738 + L2 LINE L2 3183 3312 -1 352 245 54 138 chr9 76693909 76694052 -41168575 + L1ME4a LINE L1 5862 5975 -146 2038 150 0 10 chr9 76694052 76694366 -41168261 - AluSx SINE Alu -1 311 1 352 245 54 138 chr9 76694366 76694483 -41168144 + L1ME4a LINE L1 5975 6100 -21 2146 99 13 33 chr9 76694483 76694786 -41167841 + AluSx SINE Alu 1 297 -15 213 283 111 10 chr9 76695481 76695580 -41167047 - MIR SINE MIR -37 225 117 314 193 18 0 chr9 76695690 76695747 -41166880 + MER66A LTR ERV1 279 336 -142 458 136 48 0 chr9 76695747 76695850 -41166777 + A-rich Low_complexity Low_complexity 2 109 0 183 327 144 10 chr9 76695861 76695965 -41166662 - L2 LINE L2 -18 3295 3178 299 358 89 8 chr9 76696522 76696645 -41165982 - L2 LINE L2 -25 3247 3115 343 226 78 29 chr9 76696797 76696899 -41165728 + MIR SINE MIR 69 175 -87 227 261 0 0 chr9 76697584 76697630 -41164997 + L1ME LINE L1 5727 5772 -349 809 169 0 0 chr9 76697658 76697782 -41164845 + FLAM_C SINE Alu 1 124 -19 2546 33 3 7 chr9 76697808 76698108 -41164519 - AluY SINE Alu -12 299 1 22 0 0 0 chr9 76698144 76698166 -41164461 + AT_rich Low_complexity Low_complexity 1 22 0 1268 82 0 0 chr9 76699321 76699480 -41163147 + FRAM SINE Alu 1 40 0 236 314 66 50 chr9 76701266 76701387 -41161240 + MIR SINE MIR 84 206 -56 2373 43 20 30 chr9 76701438 76701742 -41160885 + AluY SINE Alu 1 301 -10 259 220 0 0 chr9 76701919 76701969 -41160658 + MER5B DNA MER1_type 4 53 -125 1266 171 39 12 chr9 76701979 76702236 -41160391 + L1MD3 LINE L1 7730 7993 -2 370 232 0 42 chr9 76702292 76702387 -41160240 + MER5B DNA MER1_type 88 178 0 259 234 64 64 chr9 76702419 76702513 -41160114 + L2 LINE L2 3174 3267 -5 21 0 0 0 chr9 76703218 76703239 -41159388 + AT_rich Low_complexity Low_complexity 1 21 0 309 51 0 0 chr9 76703545 76703584 -41159043 + (CA)n Simple_repeat Simple_repeat 2 40 0 452 303 179 16 chr9 76703882 76704324 -41158303 + L1MC4a LINE L1 4890 5403 -743 300 57 0 0 chr9 76704375 76704410 -41158217 + U2 snRNA snRNA 1 35 -153 2639 30 0 0 chr9 76704410 76704710 -41157917 - AluY SINE Alu -11 300 1 500 255 95 35 chr9 76704730 76704930 -41157697 + L1MC4a LINE L1 5456 5667 -454 348 318 68 14 chr9 76704933 76705081 -41157546 + MIR SINE MIR 102 257 -5 401 200 211 38 chr9 76705090 76705275 -41157352 + L1MC4a LINE L1 5682 5898 -1910 261 237 97 11 chr9 76705336 76705429 -41157198 + L1ME4a LINE L1 6019 6119 -2 413 286 0 27 chr9 76707672 76707784 -41154843 + MIR3 SINE MIR 58 166 -42 24 32 0 0 chr9 76708868 76708899 -41153728 + AT_rich Low_complexity Low_complexity 1 31 0 2480 86 0 0 chr9 76708908 76709210 -41153417 + AluSg SINE Alu 1 302 -8 387 261 0 35 chr9 76709507 76709622 -41153005 + MIR SINE MIR 92 202 -60 645 203 44 19 chr9 76709666 76709824 -41152803 - MIR SINE MIR -10 252 91 246 330 22 0 chr9 76710039 76710130 -41152497 - MIR SINE MIR -168 94 2 2170 108 3 10 chr9 76710449 76710733 -41151894 + AluSx SINE Alu 1 284 -28 183 80 0 0 chr9 76710733 76710758 -41151869 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 2170 108 3 10 chr9 76710758 76710778 -41151849 + AluSx SINE Alu 284 303 -9 402 75 38 38 chr9 76710778 76710858 -41151769 + (GGGGA)n Simple_repeat Simple_repeat 1 80 0 967 167 48 92 chr9 76711692 76711920 -41150707 + MER20 DNA MER1_type 2 219 0 402 280 43 65 chr9 76712316 76712522 -41150105 + MIR SINE MIR 42 251 -11 320 253 187 0 chr9 76712751 76712842 -41149785 + L2 LINE L2 3160 3267 -5 271 292 84 47 chr9 76713011 76713285 -41149342 - L1ME4a LINE L1 -189 5932 5649 1671 194 56 30 chr9 76713495 76713596 -41149031 + Charlie4a DNA MER1_type 64 161 -1800 1406 55 0 0 chr9 76713596 76713761 -41148866 - L1PA11 LINE L1 -4 6170 6006 1671 194 56 30 chr9 76713761 76714088 -41148539 + Charlie4a DNA MER1_type 161 503 -5 379 316 32 7 chr9 76714139 76714294 -41148333 - L1ME4a LINE L1 -460 5661 5503 380 244 77 45 chr9 76714925 76715081 -41147546 + MIR SINE MIR 76 236 -26 596 326 25 25 chr9 76715489 76715731 -41146896 + MIR SINE MIR 16 257 -5 305 301 65 0 chr9 76715857 76715950 -41146677 - MIR3 SINE MIR -4 204 106 1273 236 152 16 chr9 76717344 76718117 -41144510 - L2 LINE L2 -34 3279 2338 603 255 54 0 chr9 76718127 76718276 -41144351 - L2 LINE L2 -1232 2082 1926 539 211 0 18 chr9 76718364 76718473 -41144154 - MER45A DNA AcHobo -4 174 68 385 300 61 0 chr9 76718473 76718646 -41143981 - MIR SINE MIR -50 212 30 2044 146 0 13 chr9 76718656 76718971 -41143656 - AluJb SINE Alu -1 311 1 372 220 73 9 chr9 76719245 76719354 -41143273 + MIR SINE MIR 77 192 -70 698 344 90 42 chr9 76719876 76720934 -41141693 + L2 LINE L2 1728 2835 -479 224 122 24 0 chr9 76721094 76721135 -41141492 + (ATG)n Simple_repeat Simple_repeat 3 44 0 436 326 136 11 chr9 76721173 76721357 -41141270 - MIR SINE MIR -53 209 3 324 219 0 62 chr9 76721465 76721561 -41141066 - L1MC4 LINE L1 -1339 6703 6614 39885 77 6 10 chr9 76721565 76727714 -41134913 - L1PA6 LINE L1 -16 6138 11 366 387 28 7 chr9 76727771 76727913 -41134714 - L2 LINE L2 -4 3268 3124 1895 168 0 19 chr9 76727945 76728255 -41134372 - AluJo SINE Alu -8 304 1 716 266 82 13 chr9 76728493 76728726 -41133901 - MIR SINE MIR 0 262 14 283 296 14 0 chr9 76728993 76729064 -41133563 - L2 LINE L2 -214 3058 2987 439 269 80 91 chr9 76729071 76729221 -41133406 + MIR SINE MIR 1 148 -114 2177 126 0 0 chr9 76729221 76729507 -41133120 + AluSx SINE Alu 1 286 -26 439 269 80 91 chr9 76729507 76729620 -41133007 + MIR SINE MIR 148 261 -1 340 225 200 8 chr9 76729696 76729816 -41132811 - MIR3 SINE MIR -64 144 2 1054 182 25 49 chr9 76730020 76730252 -41132375 + AluJo SINE Alu 87 313 0 234 167 0 62 chr9 76730256 76730304 -41132323 + MER113 DNA MER1_type? 139 183 -338 791 240 14 32 chr9 76731709 76731958 -41130669 - AluSg/x SINE Alu 0 310 76 210 400 0 0 chr9 76732531 76732651 -41129976 + G-rich Low_complexity Low_complexity 1 120 0 1267 106 0 11 chr9 76732756 76732935 -41129692 + AluSg/x SINE Alu 125 301 -9 338 181 0 0 chr9 76734013 76734080 -41128547 + MIR SINE MIR 73 140 -68 1248 160 0 41 chr9 76734148 76734367 -41128260 + AluJb SINE Alu 86 295 -17 1658 155 10 30 chr9 76734433 76734736 -41127891 + AluJb SINE Alu 1 297 -15 2427 67 0 0 chr9 76734746 76735045 -41127582 + AluY SINE Alu 1 299 -12 2041 124 14 7 chr9 76735141 76735432 -41127195 - AluJo SINE Alu -19 293 1 486 284 186 42 chr9 76735800 76736272 -41126355 - L2 LINE L2 -5 3267 2723 269 127 0 73 chr9 76736626 76736681 -41125946 + 7SK RNA RNA 45 95 -98 195 271 0 0 chr9 76736887 76736935 -41125692 - L2 LINE L2 -221 3051 3004 1039 174 31 15 chr9 76737010 76737206 -41125421 + MER3 DNA MER1_type 11 209 0 2077 101 3 70 chr9 76737370 76737697 -41124930 - AluSx SINE Alu -7 305 1 309 26 0 0 chr9 76737997 76738035 -41124592 + (TG)n Simple_repeat Simple_repeat 2 39 0 551 283 182 54 chr9 76738215 76738808 -41123819 + L3 LINE CR1 731 1399 -178 525 264 16 0 chr9 76739667 76739788 -41122839 + Charlie1a DNA MER1_type 3 125 -1330 249 103 0 0 chr9 76739788 76739827 -41122800 + L1MB5 LINE L1 5896 5934 -244 403 91 18 0 chr9 76739827 76739882 -41122745 + AluSc SINE Alu 124 179 -130 339 160 28 94 chr9 76739984 76740090 -41122537 + FRAM SINE Alu 64 162 -4 1269 162 48 0 chr9 76740090 76740319 -41122308 + L1MB5 LINE L1 5925 6164 -10 242 279 0 0 chr9 76740917 76740978 -41121649 - MIR SINE MIR -28 234 174 188 191 48 0 chr9 76741214 76741256 -41121371 - MIR3 SINE MIR -11 197 154 713 68 0 3 chr9 76741467 76741688 -41120939 + AluY SINE Alu 1 296 -15 605 289 29 53 chr9 76742153 76742380 -41120247 + LTR16A LTR ERVL 171 405 -45 683 129 24 48 chr9 76742420 76742544 -41120083 + FLAM_A SINE Alu 22 142 0 316 329 165 0 chr9 76742733 76742897 -41119730 - MIR3 SINE MIR -2 206 16 2389 97 0 10 chr9 76743749 76744057 -41118570 - AluSx SINE Alu -7 305 1 2139 110 0 10 chr9 76744363 76744655 -41117972 + AluSq SINE Alu 2 290 -23 219 36 0 0 chr9 76744658 76744686 -41117941 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 275 116 0 0 chr9 76744687 76744730 -41117897 + L1ME2 LINE L1 5777 5819 -345 754 194 16 0 chr9 76744730 76744859 -41117768 + AluJb SINE Alu 2 132 -180 1285 201 67 32 chr9 76744871 76745015 -41117612 + L1ME2 LINE L1 5814 5951 -213 2066 117 11 0 chr9 76745015 76745298 -41117329 + AluSq SINE Alu 1 286 -27 249 33 0 0 chr9 76745300 76745330 -41117297 + (CAT)n Simple_repeat Simple_repeat 2 31 0 1285 201 67 32 chr9 76745330 76745495 -41117132 + L1ME2 LINE L1 5951 6137 -27 1784 132 59 4 chr9 76745530 76745650 -41116977 + AluJo SINE Alu 3 115 -197 275 0 0 28 chr9 76745650 76745686 -41116941 + (TAA)n Simple_repeat Simple_repeat 2 36 0 1784 132 59 4 chr9 76745686 76745838 -41116789 + AluJo SINE Alu 115 290 -22 847 243 98 68 chr9 76746275 76746344 -41116283 - HAL1 LINE L1 0 2507 2441 2110 135 0 0 chr9 76746344 76746660 -41115967 + AluSx SINE Alu 6 321 0 847 243 98 68 chr9 76746660 76747565 -41115062 - HAL1 LINE L1 -66 2441 1386 600 270 26 45 chr9 76747642 76747866 -41114761 + HAL1 LINE L1 695 915 -1592 2216 105 0 22 chr9 76747866 76748179 -41114448 + AluSq SINE Alu 1 306 -7 600 270 26 45 chr9 76748179 76748221 -41114406 + HAL1 LINE L1 915 956 -1551 1454 139 70 83 chr9 76748225 76748526 -41114101 + AluJo SINE Alu 1 297 -15 270 211 28 0 chr9 76748531 76748640 -41113987 + (TA)n Simple_repeat Simple_repeat 2 113 0 299 213 16 47 chr9 76748684 76748811 -41113816 + HAL1 LINE L1 982 1104 -1403 * 541 238 83 36 chr9 76748805 76748973 -41113654 - HAL1 LINE L1 -1793 714 539 503 251 34 11 chr9 76748968 76749143 -41113484 - HAL1 LINE L1 -1232 1275 1097 * 322 229 12 24 chr9 76749279 76749362 -41113265 - HAL1 LINE L1 -1994 513 432 2095 117 0 0 chr9 76749465 76749738 -41112889 + AluSx SINE Alu 1 273 -39 343 192 10 30 chr9 76749738 76749837 -41112790 + A-rich Low_complexity Low_complexity 3 99 0 212 156 0 0 chr9 76749838 76749870 -41112757 + polypurine Low_complexity Low_complexity 4 35 0 276 313 39 43 chr9 76749918 76750030 -41112597 + L1ME4a LINE L1 4880 4991 -1155 2177 114 3 10 chr9 76750030 76750328 -41112299 + AluSx SINE Alu 3 298 -14 276 313 39 43 chr9 76750328 76750445 -41112182 + L1ME4a LINE L1 4991 5108 -1038 383 56 19 0 chr9 76750508 76750562 -41112065 + (TG)n Simple_repeat Simple_repeat 2 56 0 307 297 36 22 chr9 76750723 76750861 -41111766 + L1ME4a LINE L1 5329 5468 -2340 2107 151 61 10 chr9 76750867 76751078 -41111549 - L1MB7 LINE L1 -12 6172 5973 2231 87 7 20 chr9 76751078 76751376 -41111251 - AluSx SINE Alu -18 294 1 2107 151 61 10 chr9 76751376 76751556 -41111071 - L1MB7 LINE L1 -211 5973 5761 2364 61 40 7 chr9 76751579 76751876 -41110751 - AluY SINE Alu -4 307 1 1787 198 22 42 chr9 76751876 76752281 -41110346 - MLT1D LTR MaLR -26 479 83 1158 140 10 0 chr9 76752308 76752501 -41110126 - L1MB7 LINE L1 -397 5787 5593 * 3392 148 150 51 chr9 76752491 76753075 -41109552 - L1MB7 LINE L1 -47 6137 5613 1696 99 4 29 chr9 76753075 76753318 -41109309 + AluSq SINE Alu 1 237 -76 3392 148 150 51 chr9 76753318 76753491 -41109136 - L1MB7 LINE L1 -571 5613 5459 2026 99 59 0 chr9 76753491 76753763 -41108864 - AluSx SINE Alu -24 288 1 3392 148 150 51 chr9 76753763 76754030 -41108597 - L1MB7 LINE L1 -725 5459 5220 2586 48 0 0 chr9 76754030 76754325 -41108302 - AluY SINE Alu -16 295 1 3392 148 150 51 chr9 76754325 76754466 -41108161 - L1MB7 LINE L1 -964 5220 4842 781 253 100 36 chr9 76754472 76755050 -41107577 + L1ME4a LINE L1 5479 6121 0 280 211 28 0 chr9 76755092 76755163 -41107464 + L1ME4a LINE L1 5822 5894 -227 318 231 135 51 chr9 76755351 76755507 -41107120 + L1ME4a LINE L1 5953 6121 0 346 224 20 20 chr9 76756127 76756225 -41106402 - MIR3 SINE MIR -53 155 58 25 31 0 0 chr9 76756429 76756461 -41106166 + AT_rich Low_complexity Low_complexity 1 32 0 260 371 21 21 chr9 76756593 76756779 -41105848 + MIR SINE MIR 69 254 -8 373 219 183 12 chr9 76758554 76758718 -41103909 + MIR SINE MIR 28 219 -43 207 0 0 0 chr9 76758755 76758778 -41103849 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 25 0 0 0 chr9 76759897 76759922 -41102705 + GC_rich Low_complexity Low_complexity 1 25 0 285 216 18 18 chr9 76760027 76760138 -41102489 + (CCGCG)n Simple_repeat Simple_repeat 4 114 0 21 0 0 0 chr9 76760156 76760177 -41102450 + GC_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr9 76760656 76760688 -41101939 + GC_rich Low_complexity Low_complexity 1 32 0 27 81 0 0 chr9 76760895 76760957 -41101670 + GC_rich Low_complexity Low_complexity 1 62 0 32 57 0 0 chr9 76761075 76761128 -41101499 + GC_rich Low_complexity Low_complexity 1 53 0 26 0 0 0 chr9 76761331 76761357 -41101270 + GC_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr9 76761604 76761627 -41101000 + GC_rich Low_complexity Low_complexity 1 23 0 34 0 0 0 chr9 76761686 76761720 -41100907 + GC_rich Low_complexity Low_complexity 1 34 0 25 75 0 0 chr9 76761909 76761962 -41100665 + GC_rich Low_complexity Low_complexity 1 53 0 2278 87 13 0 chr9 76762677 76762986 -41099641 - AluSp SINE Alu 0 313 1 364 260 31 0 chr9 76763045 76763141 -41099486 - Charlie5 DNA MER1_type -2511 101 3 21 0 0 0 chr9 76764210 76764231 -41098396 + AT_rich Low_complexity Low_complexity 1 21 0 1995 150 3 0 chr9 76765307 76765614 -41097013 + AluSq SINE Alu 1 308 -5 2246 94 3 13 chr9 76767679 76767987 -41094640 - AluSx SINE Alu -7 305 1 1671 177 24 0 chr9 76767991 76768279 -41094348 - AluJo SINE Alu -17 295 1 189 316 53 0 chr9 76769108 76769165 -41093462 - L2 LINE L2 -66 3206 3147 2154 119 7 3 chr9 76769169 76769471 -41093156 - AluSx SINE Alu -9 303 1 650 159 66 33 chr9 76769962 76770113 -41092514 - MIR SINE MIR -87 175 20 2055 113 11 0 chr9 76770727 76771011 -41091616 - AluSx SINE Alu -25 287 1 487 313 76 10 chr9 76771939 76772137 -41090490 + MIR SINE MIR 3 213 -49 560 274 36 24 chr9 76772277 76772445 -41090182 - MIR3 SINE MIR -3 205 36 2104 121 0 26 chr9 76772717 76773030 -41089597 + AluSx SINE Alu 1 305 -7 2172 93 0 21 chr9 76773668 76773978 -41088649 - AluSq SINE Alu 0 304 1 599 270 106 25 chr9 76774545 76774782 -41087845 + MIR SINE MIR 7 262 0 240 281 34 34 chr9 76774825 76774914 -41087713 + MIR3 SINE MIR 120 208 0 2908 10 0 0 chr9 76775874 76776185 -41086442 - AluYa5 SINE Alu 0 311 1 412 210 13 57 chr9 76776617 76776774 -41085853 + MIR SINE MIR 43 191 -70 726 134 31 16 chr9 76777231 76777358 -41085269 - FLAM_C SINE Alu -14 129 1 270 277 128 14 chr9 76777575 76777716 -41084911 - MIR SINE MIR -59 203 47 2360 87 10 3 chr9 76777720 76778019 -41084608 + AluSx SINE Alu 1 301 -11 2457 70 0 16 chr9 76778254 76778570 -41084057 - AluY SINE Alu 0 311 1 339 312 55 63 chr9 76778859 76779112 -41083515 - MIR SINE MIR -9 253 3 818 246 45 27 chr9 76780421 76780641 -41081986 - MER58A DNA MER1_type 0 224 1 24 32 0 0 chr9 76781766 76781797 -41080830 + AT_rich Low_complexity Low_complexity 1 31 0 1487 157 13 56 chr9 76782303 76782608 -41080019 + AluJo SINE Alu 1 292 -20 416 176 0 0 chr9 76782726 76782800 -41079827 - AluJ/FLAM SINE Alu -237 75 2 189 244 0 133 chr9 76782800 76782890 -41079737 + L2 LINE L2 3036 3113 -159 12963 86 28 40 chr9 76782912 76783789 -41078838 + Charlie3 DNA MER1_type 1 887 -1819 1980 129 17 0 chr9 76783789 76784091 -41078536 + AluSx SINE Alu 1 307 -5 12963 86 28 40 chr9 76784091 76785093 -41077534 + Charlie3 DNA MER1_type 887 1857 -849 1362 106 181 0 chr9 76785093 76785320 -41077307 - L1PA11 LINE L1 -17 6157 5890 5545 75 6 8 chr9 76785320 76786038 -41076589 + Charlie3 DNA MER1_type 1991 2706 -4 1813 130 73 52 chr9 76786467 76786797 -41075830 - MER1B DNA MER1_type 0 337 1 352 257 46 28 chr9 76787221 76787330 -41075297 - L2 LINE L2 -6 3307 3197 201 39 0 0 chr9 76787341 76787367 -41075260 + (T)n Simple_repeat Simple_repeat 1 26 0 726 202 0 0 chr9 76787380 76787504 -41075123 + FLAM_C SINE Alu 2 125 -18 265 275 169 31 chr9 76787587 76787747 -41074880 - L2 LINE L2 -193 3079 2898 550 247 11 39 chr9 76787946 76788124 -41074503 - L1MC5 LINE L1 -49 7912 7740 355 264 0 0 chr9 76788347 76788457 -41074170 + GA-rich Low_complexity Low_complexity 3 112 0 198 0 0 0 chr9 76789801 76789823 -41072804 + (TGG)n Simple_repeat Simple_repeat 2 23 0 2281 68 0 14 chr9 76789823 76790108 -41072519 - AluY SINE Alu -28 283 1 1828 142 3 14 chr9 76790110 76790405 -41072222 - AluSx SINE Alu -20 292 1 932 140 90 55 chr9 76790642 76790695 -41071932 + AluJo SINE Alu 85 135 -177 1407 134 166 8 chr9 76790695 76790948 -41071679 + AluSg1 SINE Alu 1 293 -16 932 140 90 55 chr9 76790948 76791094 -41071533 + AluJo SINE Alu 135 291 -21 2039 54 0 4 chr9 76791242 76791500 -41071127 + AluY SINE Alu 39 295 -16 430 219 115 0 chr9 76791691 76791787 -41070840 - MIR SINE MIR -71 191 85 2007 124 7 0 chr9 76791832 76792131 -41070496 - AluSq SINE Alu -12 301 1 213 250 14 14 chr9 76792440 76792512 -41070115 + GA-rich Low_complexity Low_complexity 3 74 0 28 0 0 0 chr9 76792914 76792942 -41069685 + AT_rich Low_complexity Low_complexity 1 28 0 516 257 101 14 chr9 76793330 76793478 -41069149 + MIR3 SINE MIR 41 201 -7 188 33 0 33 chr9 76794185 76794215 -41068412 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2151 109 3 10 chr9 76795001 76795313 -41067314 - AluSx SINE Alu -2 310 1 1523 171 50 0 chr9 76795892 76796172 -41066455 - AluJo SINE Alu -18 294 1 252 343 63 29 chr9 76796274 76796449 -41066178 + MIR3 SINE MIR 3 183 -25 457 272 59 15 chr9 76796778 76796914 -41065713 - MIR SINE MIR -73 189 48 2106 117 3 3 chr9 76797169 76797469 -41065158 + AluSq SINE Alu 1 300 -13 240 337 12 0 chr9 76797513 76797599 -41065028 + MIR SINE MIR 63 149 -59 208 197 213 0 chr9 76798202 76798263 -41064364 - MIR3 SINE MIR -53 155 82 2072 129 9 113 chr9 76799039 76799280 -41063347 - MLT1B LTR MaLR 0 390 126 2012 115 0 3 chr9 76799280 76799568 -41063059 - AluSx SINE Alu -25 287 1 2072 129 9 113 chr9 76799568 76799585 -41063042 - MLT1B LTR MaLR -264 126 109 912 199 0 0 chr9 76799585 76799751 -41062876 - AluJo SINE Alu 0 302 137 2072 129 9 113 chr9 76799751 76799926 -41062701 - MLT1B LTR MaLR -281 109 1 335 304 162 0 chr9 76800344 76800492 -41062135 - L3 LINE CR1 -11 1566 1395 2116 85 7 0 chr9 76800500 76800807 -41061820 + AluSg SINE Alu 1 309 0 1786 159 0 7 chr9 76800840 76801142 -41061485 + AluJb SINE Alu 3 302 -10 547 202 132 0 chr9 76801294 76801408 -41061219 - AluJo SINE Alu -173 129 1 229 170 0 0 chr9 76801420 76801467 -41061160 - Alu SINE Alu 0 300 254 211 293 103 0 chr9 76801949 76802007 -41060620 - L2 LINE L2 0 3272 3209 284 331 145 46 chr9 76802065 76802431 -41060196 - L2 LINE L2 -62 3210 2809 2294 90 0 0 chr9 76802445 76802744 -41059883 + AluSg SINE Alu 1 299 -11 2023 124 0 37 chr9 76802820 76803143 -41059484 + AluSx SINE Alu 1 311 -1 1481 168 24 7 chr9 76803436 76803728 -41058899 - AluJo SINE Alu -13 299 3 2448 39 10 3 chr9 76803936 76804242 -41058385 - AluY SINE Alu -3 308 1 1940 128 7 0 chr9 76804242 76804522 -41058105 - AluSx SINE Alu -29 283 1 1289 90 0 0 chr9 76804633 76804800 -41057827 - AluSq SINE Alu -14 299 133 186 43 0 0 chr9 76804800 76804823 -41057804 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2274 64 3 0 chr9 76804823 76805105 -41057522 - AluY SINE Alu -28 283 1 2233 92 0 0 chr9 76805107 76805400 -41057227 - AluSq SINE Alu -20 293 1 1054 196 0 0 chr9 76806243 76806416 -41056211 + FAM SINE Alu 1 173 -2 1616 167 3 41 chr9 76806428 76806746 -41055881 + AluJo SINE Alu 1 306 -6 2113 129 3 0 chr9 76806932 76807243 -41055384 + AluSx SINE Alu 1 312 0 4114 186 66 48 chr9 76807943 76808241 -41054386 + L1MD1 LINE L1 3951 4242 -2000 468 51 0 0 chr9 76808241 76808300 -41054327 + (CA)n Simple_repeat Simple_repeat 2 60 0 4114 186 66 48 chr9 76808300 76808983 -41053644 + L1MD1 LINE L1 4242 4911 -1331 1565 189 32 0 chr9 76808983 76809268 -41053359 + AluJo SINE Alu 2 295 -17 4114 186 66 48 chr9 76809268 76809309 -41053318 + L1MD1 LINE L1 4911 4950 -1292 623 173 10 0 chr9 76809309 76809413 -41053214 + U6 snRNA snRNA 2 106 -1 4114 186 66 48 chr9 76809413 76810017 -41052610 + L1MD1 LINE L1 4950 5607 -635 2109 123 7 0 chr9 76810018 76810326 -41052301 + AluSx SINE Alu 2 311 -1 1220 156 20 24 chr9 76810326 76810576 -41052051 + L1MD1 LINE L1 5813 6061 -181 1672 145 64 3 chr9 76810767 76811049 -41051578 + AluJb SINE Alu 1 299 -13 675 210 26 1 chr9 76811049 76811219 -41051408 - L1ME LINE L1 -648 5514 5332 1905 103 0 0 chr9 76811350 76811611 -41051016 - AluSx SINE Alu -1 311 51 445 296 107 54 chr9 76812183 76812463 -41050164 + L2 LINE L2 3012 3306 -7 187 225 25 0 chr9 76812956 76812996 -41049631 - L2 LINE L2 -6 3307 3267 2184 91 40 0 chr9 76813007 76813304 -41049323 + AluSg SINE Alu 1 309 -1 1944 125 0 0 chr9 76813318 76813598 -41049029 + AluSx SINE Alu 22 301 -11 1967 130 3 10 chr9 76813599 76813906 -41048721 + AluSp SINE Alu 2 306 -7 2065 107 0 0 chr9 76814174 76814479 -41048148 + AluSx SINE Alu 1 305 0 301 259 92 70 chr9 76814503 76814731 -41047896 - L2 LINE L2 -181 3091 2859 736 169 0 23 chr9 76814980 76815110 -41047517 - FLAM_A SINE Alu -6 127 1 1935 127 0 3 chr9 76815116 76815430 -41047197 - AluSx SINE Alu 0 313 1 2110 100 3 3 chr9 76815847 76816147 -41046480 + AluSg SINE Alu 1 300 -10 833 144 6 81 chr9 76816235 76816375 -41046252 - AluJ SINE Alu -18 294 168 5183 78 16 1 chr9 76816375 76817056 -41045571 + LTR8 LTR ERV1 1 691 0 833 144 6 81 chr9 76817056 76817089 -41045538 - AluJ SINE Alu -144 168 134 855 153 0 0 chr9 76817090 76817221 -41045406 - AluJ SINE Alu -170 132 2 2261 84 0 0 chr9 76817733 76818031 -41044596 - AluSg1 SINE Alu -9 300 3 907 142 0 0 chr9 76818033 76818167 -41044460 - AluSq/x SINE Alu -178 134 1 1635 120 8 15 chr9 76818167 76818433 -41044194 - MER41B-int LTR ERV1 -216 6047 5784 1008 70 8 0 chr9 76818433 76818562 -41044065 - AluSq/x SINE Alu -182 131 2 1133 121 6 0 chr9 76818574 76818748 -41043879 - AluSp SINE Alu -17 296 122 2176 106 0 3 chr9 76818749 76819061 -41043566 - AluY SINE Alu 0 311 1 677 87 113 81 chr9 76819061 76819091 -41043536 - MER41B-int LTR ERV1 -4813 1945 1917 2193 87 3 0 chr9 76819091 76819390 -41043237 + AluY SINE Alu 1 300 -11 677 87 113 81 chr9 76819390 76819544 -41043083 - MER41B-int LTR ERV1 -4841 1917 1755 3236 83 50 36 chr9 76819546 76819668 -41042959 - MER41B-int LTR ERV1 -4259 2339 2220 2226 92 0 0 chr9 76819668 76819962 -41042665 + AluSc SINE Alu 1 294 -15 3236 83 50 36 chr9 76819962 76820261 -41042366 - MER41B-int LTR ERV1 -4378 2220 1905 1992 109 39 0 chr9 76820261 76820545 -41042082 - AluSx SINE Alu -17 295 1 3236 83 50 36 chr9 76820545 76820698 -41041929 - MER41B-int LTR ERV1 -4693 1905 1756 225 65 0 0 chr9 76820706 76820737 -41041890 + (CA)n Simple_repeat Simple_repeat 2 32 0 5170 119 77 49 chr9 76820740 76821441 -41041186 - MER41B-int LTR ERV1 -5608 1150 470 2300 94 0 0 chr9 76821441 76821750 -41040877 - AluSc SINE Alu 0 309 1 5170 119 77 49 chr9 76821750 76821915 -41040712 - MER41B-int LTR ERV1 -6288 470 254 1799 153 7 3 chr9 76821915 76822210 -41040417 + AluSx SINE Alu 7 302 -10 5170 119 77 49 chr9 76822210 76822273 -41040354 - MER41B-int LTR ERV1 -6504 254 194 2403 160 12 2 chr9 76822391 76822790 -41039837 + MER57A LTR ERV1 1 403 0 5504 122 2 28 chr9 76822790 76823510 -41039117 + MER57A-int LTR ERV1 1 699 -6838 2158 104 10 0 chr9 76823510 76823817 -41038810 - AluSq SINE Alu -3 310 1 5504 122 2 28 chr9 76823817 76823923 -41038704 + MER57A-int LTR ERV1 699 806 -6731 1234 159 11 0 chr9 76823916 76824105 -41038522 + MER41-int LTR ERV1 361 551 -5395 * 2101 152 33 25 chr9 76824105 76824466 -41038161 + THE1B LTR MaLR 1 364 0 340 122 0 0 chr9 76824466 76824515 -41038112 + THE1B-int LTR MaLR 1 49 -1531 6506 108 16 24 chr9 76824526 76824862 -41037765 + MER41-int LTR ERV1 2781 3118 -4419 2075 127 0 3 chr9 76824862 76825162 -41037465 + AluSg SINE Alu 1 299 -11 6506 108 16 24 chr9 76825162 76825807 -41036820 + MER41-int LTR ERV1 3118 3754 -3783 1973 120 7 0 chr9 76825820 76826111 -41036516 + AluSg SINE Alu 1 293 -17 2265 107 0 0 chr9 76826138 76826448 -41036179 + AluSx SINE Alu 1 310 -2 3319 149 6 0 chr9 76826448 76826950 -41035677 - MER41B LTR ERV1 -130 505 1 2166 178 15 2 chr9 76826953 76827351 -41035276 - MER57A LTR ERV1 0 403 1 1768 48 126 0 chr9 76827351 76827581 -41035046 - MER57A-int LTR ERV1 0 7537 7279 503 115 150 26 chr9 76827581 76827694 -41034933 - LTR54B LTR ERV1 -367 131 5 5597 80 13 39 chr9 76827696 76827860 -41034767 - HUERS-P1 LTR ERV1 -389 7148 6981 2066 120 3 0 chr9 76827860 76828151 -41034476 - AluSx SINE Alu -19 293 2 5597 80 13 39 chr9 76828151 76828763 -41033864 - HUERS-P1 LTR ERV1 -556 6981 6392 * 13568 133 41 57 chr9 76828761 76829585 -41033042 - HUERS-P1 LTR ERV1 -3443 2820 1984 2143 127 7 0 chr9 76829585 76829884 -41032743 - AluSp SINE Alu -12 301 1 13568 133 41 57 chr9 76829884 76830881 -41031746 - HUERS-P1 LTR ERV1 -4279 1984 1026 297 0 0 0 chr9 76830881 76830914 -41031713 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 13568 133 41 57 chr9 76830914 76831924 -41030703 - HUERS-P1 LTR ERV1 -5237 1026 1 2796 115 29 110 chr9 76831926 76832096 -41030531 - LTR8 LTR ERV1 -2 689 507 2338 104 3 0 chr9 76832096 76832393 -41030234 - AluSq SINE Alu -11 302 5 2796 115 29 110 chr9 76832393 76832813 -41029814 - LTR8 LTR ERV1 -184 507 147 2367 74 3 7 chr9 76832822 76833118 -41029509 - AluSx SINE Alu -17 295 1 285 296 46 9 chr9 76833139 76833247 -41029380 + MIR SINE MIR 33 144 -64 220 369 135 27 chr9 76833255 76833477 -41029150 - MIR SINE MIR -12 250 5 30 59 0 0 chr9 76833661 76833712 -41028915 + GC_rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr9 76833825 76833846 -41028781 + GC_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr9 76834049 76834083 -41028544 + GC_rich Low_complexity Low_complexity 1 34 0 261 307 167 19 chr9 76834178 76834393 -41028234 + L2 LINE L2 2576 2822 -492 700 252 110 18 chr9 76834515 76834733 -41027894 + MIR SINE MIR 13 250 -12 283 167 0 0 chr9 76834913 76834967 -41027660 - Alu SINE Alu 0 302 249 2037 123 29 19 chr9 76834986 76835295 -41027332 - AluJb SINE Alu 0 312 1 551 247 123 18 chr9 76835361 76835531 -41027096 - MIR SINE MIR 0 262 75 819 151 0 0 chr9 76835722 76835841 -41026786 + FLAM_C SINE Alu 1 119 -24 352 276 179 0 chr9 76835875 76836009 -41026618 + MIR3 SINE MIR 40 197 -11 2501 77 0 0 chr9 76836102 76836400 -41026227 - AluY SINE Alu -12 299 2 1999 160 0 0 chr9 76836499 76836793 -41025834 - AluJo SINE Alu -18 294 1 302 283 97 76 chr9 76837080 76837225 -41025402 - MIR3 SINE MIR -51 157 10 2084 109 3 7 chr9 76837465 76837769 -41024858 + AluSq SINE Alu 1 303 0 2438 102 0 0 chr9 76838273 76838578 -41024049 + AluSx SINE Alu 1 305 -7 2425 78 3 3 chr9 76838578 76838905 -41023722 + AluSc SINE Alu 1 327 0 1705 160 56 3 chr9 76839017 76839304 -41023323 + AluJo SINE Alu 1 302 -10 318 253 194 32 chr9 76839522 76839862 -41022765 - L1ME4a LINE L1 -3 6118 5724 585 131 0 10 chr9 76839893 76839992 -41022635 + L1MD2 LINE L1 6262 6359 0 1805 130 43 14 chr9 76840001 76840307 -41022320 - AluSx SINE Alu 0 314 1 2197 126 7 0 chr9 76840310 76840620 -41022007 - AluSx SINE Alu 0 312 1 1845 185 0 3 chr9 76840623 76840921 -41021706 - AluJo SINE Alu -15 297 1 270 248 152 0 chr9 76840926 76841051 -41021576 - L1ME4a LINE L1 -392 5729 5586 2236 108 0 7 chr9 76841337 76841634 -41020993 - AluSx SINE Alu -17 295 1 366 254 8 71 chr9 76841712 76841838 -41020789 - MIR SINE MIR -117 145 28 2251 88 0 79 chr9 76842387 76842717 -41019910 - AluSq SINE Alu -9 304 1 2222 68 3 3 chr9 76842747 76843039 -41019588 + THE1A LTR MaLR 1 292 -63 276 255 28 38 chr9 76843044 76843150 -41019477 - MARNA DNA Mariner -468 118 14 1073 182 13 44 chr9 76843305 76843530 -41019097 + Charlie1 DNA MER1_type 3 220 -2541 3910 173 49 37 chr9 76843543 76843732 -41018895 - L1MB8 LINE L1 -26 6152 5967 2300 121 0 0 chr9 76843732 76844029 -41018598 - AluSx SINE Alu -15 297 1 3910 173 49 37 chr9 76844029 76844787 -41017840 - L1MB8 LINE L1 -211 5967 5195 1979 173 0 6 chr9 76844787 76845100 -41017527 - AluJb SINE Alu -1 311 1 3910 173 49 37 chr9 76845100 76845209 -41017418 - L1MB8 LINE L1 -983 5195 5089 1971 145 3 16 chr9 76845209 76845512 -41017115 - AluSx SINE Alu -8 304 6 3299 209 29 61 chr9 76845550 76845610 -41017017 + L1MD2 LINE L1 5426 5486 -873 1671 163 6 51 chr9 76845610 76845923 -41016704 + AluJo SINE Alu 1 299 -13 3299 209 29 61 chr9 76845923 76846353 -41016274 + L1MD2 LINE L1 5486 5810 -549 2300 108 0 0 chr9 76846353 76846650 -41015977 - AluSg SINE Alu -13 297 1 3299 209 29 61 chr9 76846650 76847183 -41015444 + L1MD2 LINE L1 5810 6359 0 2295 116 7 0 chr9 76847193 76847496 -41015131 - AluSx SINE Alu -7 305 1 2074 120 34 0 chr9 76847507 76847798 -41014829 - AluSq SINE Alu -12 301 1 1878 155 3 26 chr9 76847886 76848190 -41014437 - AluJo SINE Alu -15 297 1 578 328 84 0 chr9 76848404 76848642 -41013985 + MIR SINE MIR 5 262 0 287 280 21 0 chr9 76848693 76848786 -41013841 + MIR SINE MIR 43 137 -71 280 344 89 6 chr9 76849152 76849332 -41013295 + MIR SINE MIR 32 226 -36 2359 85 3 0 chr9 76849492 76849786 -41012841 - AluSg SINE Alu -14 296 2 2561 81 0 0 chr9 76850351 76850661 -41011966 - AluSg SINE Alu 0 310 1 1900 154 4 0 chr9 76850892 76851164 -41011463 - AluJb SINE Alu -39 273 1 1227 185 0 40 chr9 76852104 76852331 -41010296 + AluJo SINE Alu 3 220 -92 286 77 0 77 chr9 76852331 76852383 -41010244 + FLAM_A SINE Alu 85 132 -1 565 137 0 48 chr9 76852444 76852590 -41010037 + (GGGA)n Simple_repeat Simple_repeat 4 142 0 658 188 67 12 chr9 76852765 76852930 -41009697 + L1MA10 LINE L1 6151 6324 -10 2360 76 31 0 chr9 76853456 76853744 -41008883 - AluSx SINE Alu -15 297 1 871 142 0 22 chr9 76854207 76854341 -41008286 - FLAM_C SINE Alu -12 131 1 901 141 0 15 chr9 76854453 76854588 -41008039 - FLAM_C SINE Alu 0 133 1 568 204 74 0 chr9 76854638 76854746 -41007881 + AluJo SINE Alu 125 240 -72 399 223 32 102 chr9 76854748 76854905 -41007722 - MIR SINE MIR -50 212 67 2274 110 17 0 chr9 76855632 76855933 -41006694 + AluSx SINE Alu 1 306 -6 441 218 11 54 chr9 76855933 76856043 -41006584 - L1P4 LINE L1 -391 5770 5662 373 236 74 40 chr9 76856181 76856329 -41006298 - MIR3 SINE MIR -55 153 1 21 0 0 0 chr9 76856656 76856677 -41005950 + AT_rich Low_complexity Low_complexity 1 21 0 2177 144 0 0 chr9 76857010 76857322 -41005305 + AluSx SINE Alu 1 312 0 494 247 253 0 chr9 76857651 76857825 -41004802 - MIR SINE MIR 0 262 45 278 194 0 30 chr9 76859428 76859495 -41003132 + MIR SINE MIR 81 145 -63 481 269 50 44 chr9 76860678 76860860 -41001767 - L2 LINE L2 -1 3312 3130 547 196 11 0 chr9 76860861 76860953 -41001674 + FAM SINE Alu 1 93 -92 265 370 22 0 chr9 76861009 76861101 -41001526 + L3 LINE CR1 1410 1503 -74 299 215 15 15 chr9 76861257 76861322 -41001305 - L2 LINE L2 -3 3269 3205 1347 91 6 6 chr9 76861749 76861924 -41000703 - AluSg/x SINE Alu -13 297 123 403 202 147 39 chr9 76861933 76862062 -41000565 - MIR SINE MIR -45 217 75 706 265 101 5 chr9 76862342 76862561 -41000066 + MIR SINE MIR 2 241 -21 271 298 122 43 chr9 76863814 76864069 -40998558 - L2 LINE L2 -457 2857 2583 312 200 15 15 chr9 76864145 76864210 -40998417 - L2 LINE L2 -3 3269 3205 24 32 0 0 chr9 76864814 76864845 -40997782 + GC_rich Low_complexity Low_complexity 1 31 0 25 31 0 0 chr9 76865116 76865148 -40997479 + GC_rich Low_complexity Low_complexity 1 32 0 325 308 75 35 chr9 76865361 76865424 -40997203 - L1ME4a LINE L1 -114 6007 5948 1544 50 0 0 chr9 76865424 76865605 -40997022 - AluY SINE Alu -3 308 128 325 308 75 35 chr9 76865605 76865768 -40996859 - L1ME4a LINE L1 -173 5948 5772 540 252 29 0 chr9 76865813 76865952 -40996675 - L1ME4a LINE L1 -446 5675 5533 180 0 0 0 chr9 76865995 76866015 -40996612 + (TTG)n Simple_repeat Simple_repeat 2 21 0 301 224 0 0 chr9 76866023 76866081 -40996546 - L1ME LINE L1 -544 5626 5569 269 261 29 0 chr9 76866077 76866146 -40996481 - L1M3 LINE L1 -416 5755 5685 * 2828 137 54 57 chr9 76866174 76866254 -40996373 + LTR36 LTR ERV1 17 96 -515 2270 113 0 0 chr9 76866254 76866555 -40996072 - AluSq SINE Alu -12 301 1 2828 137 54 57 chr9 76866555 76867071 -40995556 + LTR36 LTR ERV1 96 611 0 341 188 14 0 chr9 76867072 76867141 -40995486 - L1M3 LINE L1 -471 5699 5630 331 287 83 35 chr9 76867140 76867370 -40995257 + L1M4 LINE L1 4081 4321 -1825 * 835 221 84 33 chr9 76867358 76867639 -40994988 + L1ME3A LINE L1 5835 6133 -37 2334 106 3 0 chr9 76867639 76867942 -40994685 - AluSx SINE Alu -8 304 1 835 221 84 33 chr9 76867942 76867959 -40994668 + L1ME3A LINE L1 6133 6148 -22 280 176 101 92 chr9 76868030 76868149 -40994478 + LTR24B LTR ERV1 450 569 -7 304 239 131 31 chr9 76868243 76868373 -40994254 + L1ME4a LINE L1 5681 5824 -297 832 181 8 0 chr9 76868374 76868507 -40994120 + AluJb SINE Alu 121 254 -58 408 217 148 48 chr9 76868593 76868823 -40993804 + L1ME4a LINE L1 5855 6107 -14 180 0 0 0 chr9 76868863 76868883 -40993744 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 235 204 38 98 chr9 76869463 76869595 -40993032 + L2 LINE L2 2927 3050 -263 2453 144 13 0 chr9 76869664 76870060 -40992567 + MER57A LTR ERV1 3 403 0 478 288 110 27 chr9 76870076 76870398 -40992229 + L2 LINE L2 2258 2979 -334 714 256 64 48 chr9 76870417 76870667 -40991960 - MIR SINE MIR -1 261 8 460 254 174 62 chr9 76870706 76870813 -40991814 + L2 LINE L2 3003 3097 -216 2348 92 0 0 chr9 76870813 76871122 -40991505 - AluSg SINE Alu 0 309 1 460 254 174 62 chr9 76871122 76871289 -40991338 + L2 LINE L2 3097 3309 -4 207 69 0 0 chr9 76871303 76871332 -40991295 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 188 205 26 0 chr9 76871337 76871376 -40991251 - L2 LINE L2 -12 3301 3262 206 103 0 26 chr9 76872339 76872378 -40990249 + (TTCC)n Simple_repeat Simple_repeat 3 40 0 230 268 24 12 chr9 76872709 76872791 -40989836 + LTR67 LTR ERVL 85 167 -390 598 270 40 18 chr9 76872877 76873099 -40989528 + LTR67 LTR ERVL 326 552 -5 192 254 79 16 chr9 76873562 76873625 -40989002 + L2 LINE L2 3206 3272 0 581 301 91 60 chr9 76873668 76873995 -40988632 + L2 LINE L2 2405 2757 -557 2026 150 17 0 chr9 76873995 76874289 -40988338 + AluSx SINE Alu 1 299 -13 581 301 91 60 chr9 76874289 76874499 -40988128 + L2 LINE L2 2757 2959 -355 2362 59 28 3 chr9 76875508 76875798 -40986829 + AluY SINE Alu 1 297 -14 1429 152 70 9 chr9 76875866 76876096 -40986531 - AluSx SINE Alu -14 298 55 2368 105 3 0 chr9 76876249 76876553 -40986074 + AluSp SINE Alu 1 305 -8 432 280 132 16 chr9 76876590 76876772 -40985855 + MIR SINE MIR 16 218 -44 512 287 68 89 chr9 76877262 76877825 -40984802 + L1MB4 LINE L1 4208 4847 -1299 28 29 0 0 chr9 76877892 76877927 -40984700 + AT_rich Low_complexity Low_complexity 1 35 0 2114 115 17 0 chr9 76878043 76878353 -40984274 - AluSq SINE Alu 0 315 1 404 297 30 37 chr9 76878363 76878506 -40984121 + L1MB4 LINE L1 5445 5593 -528 2062 113 24 3 chr9 76878506 76878798 -40983829 - AluSq SINE Alu -15 298 1 404 297 30 37 chr9 76878798 76878907 -40983720 + L1MB4 LINE L1 5593 5701 -420 1143 166 0 0 chr9 76878935 76879116 -40983511 + AluYa5 SINE Alu 131 311 0 860 210 46 61 chr9 76879160 76879489 -40983138 + MER83C LTR ERV1 50 373 0 2027 177 12 10 chr9 76879532 76879945 -40982682 + L1MB4 LINE L1 5767 6180 0 2382 84 3 7 chr9 76879983 76880292 -40982335 + AluSg1 SINE Alu 1 308 -1 239 196 39 0 chr9 76880619 76880635 -40981992 + AluSg/x SINE Alu 116 133 -167 2431 87 0 3 chr9 76880635 76880935 -40981692 + AluSc SINE Alu 1 299 -10 282 143 0 0 chr9 76881602 76881651 -40980976 + (GA)n Simple_repeat Simple_repeat 2 50 0 1683 127 0 0 chr9 76882432 76882695 -40979932 + AluSx SINE Alu 58 320 0 418 320 56 24 chr9 76882824 76883074 -40979553 + L1MEd LINE L1 260 517 -5602 315 290 188 11 chr9 76883485 76883661 -40978966 - Charlie8 DNA MER1_type -2135 282 76 873 183 37 0 chr9 76883688 76883879 -40978748 + L1MD2 LINE L1 4412 4609 -1537 1294 162 0 5 chr9 76883892 76884096 -40978531 - AluJo SINE Alu 0 312 110 2889 191 58 46 chr9 76884097 76884752 -40977875 + L1MD2 LINE L1 5373 6040 -319 2038 122 14 17 chr9 76884752 76885046 -40977581 - AluSx SINE Alu -19 293 1 2889 191 58 46 chr9 76885046 76885155 -40977472 + L1MD2 LINE L1 6040 6146 -213 333 205 125 9 chr9 76885178 76885290 -40977337 + L1MD2 LINE L1 6222 6346 -13 1361 95 45 0 chr9 76885366 76885566 -40977061 - MER30 DNA MER1_type 0 230 22 1695 144 7 22 chr9 76885958 76886229 -40976398 - AluJo SINE Alu -12 300 34 241 311 10 19 chr9 76886300 76886403 -40976224 + GA-rich Low_complexity Low_complexity 2 103 0 660 160 120 0 chr9 76886714 76886864 -40975763 + MER69A DNA AcHobo 9 176 -1 381 266 113 24 chr9 76887128 76887252 -40975375 - MIR3 SINE MIR -41 167 33 271 295 0 0 chr9 76887396 76887457 -40975170 - L2 LINE L2 -3 3310 3250 198 233 23 0 chr9 76887680 76887723 -40974904 + L2 LINE L2 3133 3176 -96 1646 121 50 64 chr9 76887802 76887927 -40974700 + AluJo SINE Alu 1 126 -186 450 0 0 0 chr9 76887927 76887977 -40974650 + (TAAAA)n Simple_repeat Simple_repeat 2 51 0 1646 121 50 64 chr9 76887977 76888149 -40974478 + AluJo SINE Alu 126 294 -18 236 267 40 0 chr9 76888249 76888324 -40974303 + (TGGA)n Simple_repeat Simple_repeat 1 78 0 891 176 0 0 chr9 76888370 76888512 -40974115 + FLAM_A SINE Alu 1 142 0 247 233 0 17 chr9 76888512 76888572 -40974055 + AluYa5 SINE Alu 126 184 -117 7676 181 60 52 chr9 76888572 76888736 -40973891 + LTR23-int LTR ERV1 1698 1859 -3264 2288 97 7 0 chr9 76888736 76889036 -40973591 + AluSp SINE Alu 1 302 -11 7676 181 60 52 chr9 76889036 76889597 -40973030 + LTR23-int LTR ERV1 1859 2414 -2709 2346 100 3 0 chr9 76889597 76889898 -40972729 + AluSg SINE Alu 1 302 -8 7676 181 60 52 chr9 76889898 76889910 -40972717 + LTR23-int LTR ERV1 2414 2424 -2699 2374 110 3 0 chr9 76889910 76890219 -40972408 + AluSq SINE Alu 1 310 -3 7676 181 60 52 chr9 76890219 76890436 -40972191 + LTR23-int LTR ERV1 2424 2638 -2485 2215 135 0 0 chr9 76890436 76890733 -40971894 - AluJb SINE Alu -15 297 1 7676 181 60 52 chr9 76890733 76891416 -40971211 + LTR23-int LTR ERV1 2638 3314 -1809 2353 56 42 3 chr9 76891416 76891700 -40970927 - AluY SINE Alu -16 295 1 7676 181 60 52 chr9 76891700 76892149 -40970478 + LTR23-int LTR ERV1 3314 3810 -1313 2300 102 0 37 chr9 76892149 76892335 -40970292 - AluSx SINE Alu 0 312 142 2110 124 3 3 chr9 76892335 76892625 -40970002 - AluSg SINE Alu -19 291 2 2300 102 0 37 chr9 76892625 76892762 -40969865 - AluSx SINE Alu -170 142 1 7676 181 60 52 chr9 76892762 76892931 -40969696 + LTR23-int LTR ERV1 3810 3976 -1147 923 122 0 36 chr9 76892962 76893101 -40969526 + AluJo SINE Alu 1 134 -178 2433 118 120 78 chr9 76893112 76893125 -40969502 + LTR23-int LTR ERV1 5144 5155 -1176 1845 141 4 11 chr9 76893125 76893401 -40969226 + AluSx SINE Alu 30 303 -9 2433 118 120 78 chr9 76893401 76893633 -40968994 + LTR23-int LTR ERV1 5155 5376 -955 2179 120 0 29 chr9 76893633 76893942 -40968685 + AluJb SINE Alu 1 300 -12 2433 118 120 78 chr9 76893942 76894220 -40968407 + LTR23-int LTR ERV1 5376 5690 -641 1980 133 14 4 chr9 76894355 76894673 -40967954 - AluSx SINE Alu 0 321 1 875 186 29 19 chr9 76894673 76894883 -40967744 + LTR23 LTR ERV1 226 437 0 1127 169 42 132 chr9 76896682 76896882 -40965745 - MER65A LTR ERV1 -2 443 301 2673 45 0 0 chr9 76896882 76897193 -40965434 - AluY SINE Alu 0 311 1 1127 169 42 132 chr9 76897193 76897423 -40965204 - MER65A LTR ERV1 -144 301 52 1019 117 7 0 chr9 76897425 76897562 -40965065 - FRAM SINE Alu -23 153 16 253 163 0 0 chr9 76897574 76897617 -40965010 - MER65A LTR ERV1 -402 43 1 262 319 12 71 chr9 76897756 76897925 -40964702 + L2 LINE L2 2940 3098 -174 202 256 178 22 chr9 76897948 76898038 -40964589 + L2 LINE L2 3209 3312 -1 21 0 0 0 chr9 76898564 76898585 -40964042 + AT_rich Low_complexity Low_complexity 1 21 0 229 266 114 56 chr9 76898689 76898837 -40963790 + MIR SINE MIR 7 164 -62 185 220 20 20 chr9 76899228 76899278 -40963349 + MIR SINE MIR 36 85 -123 503 278 53 24 chr9 76899310 76899479 -40963148 - MER5B DNA MER1_type -2 176 3 291 338 50 14 chr9 76899683 76899822 -40962805 - L3 LINE CR1 -15 1562 1419 334 219 70 47 chr9 76900137 76900265 -40962362 - MIR3 SINE MIR -41 167 37 327 248 231 25 chr9 76900295 76900416 -40962211 + MIR3 SINE MIR 15 160 -48 2072 126 3 46 chr9 76900563 76900741 -40961886 - AluSx SINE Alu -1 311 127 2313 99 3 0 chr9 76900741 76901033 -40961594 - AluSx SINE Alu -19 293 1 2072 126 3 46 chr9 76901033 76901085 -40961542 - AluSx SINE Alu -185 127 74 2324 98 7 7 chr9 76901085 76901390 -40961237 - AluSq SINE Alu -6 307 3 2072 126 3 46 chr9 76901390 76901483 -40961144 - AluSx SINE Alu -238 74 1 436 261 13 76 chr9 76902236 76902393 -40960234 + MIR SINE MIR 45 191 -71 425 364 11 5 chr9 76902409 76902593 -40960034 - MIR SINE MIR -66 196 12 275 323 21 0 chr9 76902596 76902689 -40959938 + MIR SINE MIR 157 251 -11 287 165 25 51 chr9 76902698 76902777 -40959850 - MIR3 SINE MIR -1 207 131 2435 107 0 0 chr9 76902788 76903096 -40959531 - AluSx SINE Alu -4 308 1 2372 107 0 0 chr9 76903113 76903412 -40959215 - AluSg SINE Alu -11 299 1 271 249 162 21 chr9 76904229 76904378 -40958249 - MIR SINE MIR -60 202 34 2357 101 0 19 chr9 76904608 76904924 -40957703 + AluSx SINE Alu 1 310 -2 418 258 26 32 chr9 76905385 76905540 -40957087 - MIR3 SINE MIR -21 187 34 1736 123 46 8 chr9 76906016 76906276 -40956351 - AluJo SINE Alu -17 295 26 443 241 36 29 chr9 76906353 76906490 -40956137 - L1MEc LINE L1 -3805 2381 2204 246 303 105 6 chr9 76906522 76906684 -40955943 + L2 LINE L2 2881 3058 -214 363 174 5 0 chr9 76906791 76906863 -40955764 - AluJ/FLAM SINE Alu -239 63 5 183 80 0 0 chr9 76906971 76906996 -40955631 + (GGA)n Simple_repeat Simple_repeat 2 26 0 1941 135 22 32 chr9 76907154 76907465 -40955162 - AluJo SINE Alu -4 308 1 303 177 54 146 chr9 76907605 76907757 -40954870 + MER20B DNA MER1_type 31 176 -81 1793 167 35 3 chr9 76908409 76908697 -40953930 - AluJo SINE Alu -15 297 1 193 235 39 20 chr9 76908760 76908811 -40953816 - MIR SINE MIR -64 144 93 200 200 0 0 chr9 76909172 76909212 -40953415 + (TGAA)n Simple_repeat Simple_repeat 4 43 0 294 242 178 34 chr9 76909649 76909830 -40952797 - MIR SINE MIR -16 246 30 364 172 237 11 chr9 76909856 76909949 -40952678 + MIR SINE MIR 36 149 -59 473 276 45 0 chr9 76910625 76910759 -40951868 + MER91C DNA MER1_type 1 140 0 1695 160 52 10 chr9 76910842 76911130 -40951497 - AluJb SINE Alu -12 300 1 436 271 28 51 chr9 76911176 76911353 -40951274 - MIR3 SINE MIR -6 202 30 1557 208 122 17 chr9 76911456 76911874 -40950753 + MLT1C LTR MaLR 5 466 -1 369 259 59 30 chr9 76912628 76912763 -40949864 + L3 LINE CR1 1376 1514 -63 605 288 122 5 chr9 76913666 76913888 -40948739 + MIR SINE MIR 6 253 -9 879 143 0 15 chr9 76913932 76914065 -40948562 - FLAM_C SINE Alu -1 132 2 221 273 0 30 chr9 76914392 76914458 -40948169 - MIR SINE MIR -91 171 108 586 297 87 0 chr9 76914877 76915062 -40947565 + MIR SINE MIR 48 248 -14 1933 165 34 31 chr9 76915072 76915236 -40947391 + L1MB7 LINE L1 5525 5687 -497 2187 92 15 0 chr9 76915236 76915509 -40947118 + AluSq SINE Alu 26 302 -11 1933 165 34 31 chr9 76915509 76915757 -40946870 + L1MB7 LINE L1 5687 5938 -246 334 80 0 20 chr9 76915757 76915807 -40946820 + ERVL LTR ERVL 2510 2558 -3206 2505 69 3 3 chr9 76915845 76916151 -40946476 + AluSc SINE Alu 1 306 -3 882 173 14 73 chr9 76916153 76916373 -40946254 + L1MB7 LINE L1 5935 6141 -43 1439 135 0 10 chr9 76916380 76916424 -40946203 + AluJb SINE Alu 93 136 -176 2164 117 3 0 chr9 76916424 76916728 -40945899 + AluSx SINE Alu 1 305 0 1439 135 0 10 chr9 76916728 76916889 -40945738 + AluJb SINE Alu 136 297 -15 229 88 0 0 chr9 76916892 76916926 -40945701 + L1MB7 LINE L1 6132 6165 -19 246 350 86 0 chr9 76917303 76917420 -40945207 - L2 LINE L2 0 3272 3146 1765 171 10 20 chr9 76917518 76917822 -40944805 - AluJo SINE Alu -11 301 1 532 239 122 5 chr9 76917969 76918174 -40944453 + L1MC4 LINE L1 7689 7917 -125 2229 112 0 7 chr9 76918428 76918732 -40943895 - AluSx SINE Alu -10 302 1 429 213 63 31 chr9 76918839 76918966 -40943661 + MIR SINE MIR 117 247 -15 250 237 8 76 chr9 76918981 76919112 -40943515 + L1ME4a LINE L1 5935 6056 -65 266 180 115 52 chr9 76919329 76919425 -40943202 - MIR SINE MIR -86 122 35 399 68 0 0 chr9 76919909 76919968 -40942659 + (CCCTG)n Simple_repeat Simple_repeat 1 59 0 553 252 205 19 chr9 76920530 76920740 -40941887 + MIR SINE MIR 1 249 -13 1836 145 67 0 chr9 76921004 76921286 -40941341 + AluJb SINE Alu 1 301 -11 396 282 133 8 chr9 76921299 76921521 -40941106 - MIR SINE MIR -6 256 14 525 279 28 106 chr9 76922215 76922537 -40940090 - L3 LINE CR1 -84 1493 1197 2113 132 7 0 chr9 76922788 76923083 -40939544 - AluSx SINE Alu -9 303 7 191 298 83 33 chr9 76923775 76923896 -40938731 + MIR SINE MIR 19 145 -117 973 130 0 20 chr9 76924063 76924209 -40938418 + FLAM_C SINE Alu 1 143 0 571 265 111 60 chr9 76924210 76924580 -40938047 + L1MC5 LINE L1 7527 7915 -46 495 162 86 0 chr9 76924678 76924783 -40937844 - MER53 DNA DNA -7 182 69 2567 166 45 110 chr9 76924784 76925046 -40937581 + L1MD1 LINE L1 5572 5850 -392 905 136 0 15 chr9 76925046 76925178 -40937449 + FLAM_C SINE Alu 4 133 0 2567 166 45 110 chr9 76925178 76925191 -40937436 + L1MD1 LINE L1 5850 5862 -380 2254 138 0 0 chr9 76925191 76925502 -40937125 + AluSx SINE Alu 1 311 -1 2567 166 45 110 chr9 76925502 76925544 -40937083 + L1MD1 LINE L1 5862 5905 -337 1662 167 26 45 chr9 76925544 76925897 -40936730 + AluJo SINE Alu 1 312 0 2567 166 45 110 chr9 76925897 76926294 -40936333 + L1MD1 LINE L1 5905 6241 -1 397 109 0 0 chr9 76926305 76926369 -40936258 + MER53 DNA DNA 122 185 -4 383 185 0 0 chr9 76926372 76926437 -40936190 + MER5A DNA MER1_type 48 112 -77 1517 185 146 13 chr9 76926481 76926859 -40935768 - MSTA LTR MaLR 0 428 1 2198 113 6 16 chr9 76926998 76927309 -40935318 - AluSg SINE Alu -2 308 1 444 283 126 47 chr9 76927323 76927697 -40934930 + L2 LINE L2 2738 3138 -175 512 253 128 22 chr9 76928399 76928719 -40933908 - L1MEd LINE L1 -1617 4512 4159 1062 125 85 17 chr9 76928733 76928893 -40933734 - AluSg/x SINE Alu -4 306 132 2495 80 0 0 chr9 76928893 76929195 -40933432 - AluSx SINE Alu -10 302 1 1062 125 85 17 chr9 76929195 76929210 -40933417 - AluSg/x SINE Alu -178 132 119 330 298 77 0 chr9 76929220 76929324 -40933303 - L1M4 LINE L1 -2629 3517 3406 1954 147 20 0 chr9 76929363 76929662 -40932965 - AluJo SINE Alu -7 305 1 725 202 146 50 chr9 76929709 76930173 -40932454 + L1MC4 LINE L1 7278 7713 -95 2278 114 0 3 chr9 76930173 76930479 -40932148 - AluSx SINE Alu -7 305 1 1177 197 4 21 chr9 76930485 76930718 -40931909 - AluJo SINE Alu -11 301 73 471 18 0 0 chr9 76930728 76930784 -40931843 + (CA)n Simple_repeat Simple_repeat 2 57 0 318 226 39 20 chr9 76930791 76930893 -40931734 + L1MC4 LINE L1 7939 8042 0 1195 253 74 12 chr9 76930897 76931398 -40931229 - L1MEd LINE L1 -2106 4023 3490 346 221 44 0 chr9 76931404 76931472 -40931155 - L1MC4 LINE L1 -1340 6702 6632 * 1088 265 100 94 chr9 76931471 76932304 -40930323 - L1ME3A LINE L1 -15 6155 5318 2312 93 0 0 chr9 76932421 76932723 -40929904 - AluSg SINE Alu -8 302 1 1532 267 65 12 chr9 76932755 76933128 -40929499 - L1MEd LINE L1 -2664 3465 3113 1771 145 41 3 chr9 76933128 76933418 -40929209 - AluJb SINE Alu -11 301 1 1532 267 65 12 chr9 76933418 76933726 -40928901 - L1MEd LINE L1 -3016 3113 2748 706 265 91 0 chr9 76933734 76933953 -40928674 - L1MEd LINE L1 -5320 799 561 311 279 0 0 chr9 76934016 76934095 -40928532 - MER116 DNA Mariner 0 80 2 21 0 0 0 chr9 76934251 76934272 -40928355 + AT_rich Low_complexity Low_complexity 1 21 0 500 228 0 49 chr9 76934372 76934495 -40928132 - MIR SINE MIR -67 141 25 608 183 59 142 chr9 76935117 76935243 -40927384 + MIR SINE MIR 32 134 -128 868 168 0 0 chr9 76935243 76935374 -40927253 + FLAM_C SINE Alu 2 132 -1 608 183 59 142 chr9 76935374 76935466 -40927161 + MIR SINE MIR 134 232 -30 511 325 82 47 chr9 76935544 76935861 -40926766 - L2 LINE L2 -4 3268 2941 216 0 0 0 chr9 76935915 76935939 -40926688 + (CA)n Simple_repeat Simple_repeat 2 25 0 1560 173 42 0 chr9 76936137 76936426 -40926201 - AluJo SINE Alu -11 301 1 405 312 82 34 chr9 76937913 76938205 -40924422 + MLT1I LTR MaLR 104 409 0 2151 97 0 0 chr9 76938350 76938640 -40923987 + AluSx SINE Alu 1 290 -22 309 317 233 0 chr9 76939086 76939266 -40923361 - MIR SINE MIR 0 262 41 183 309 18 0 chr9 76939389 76939444 -40923183 - MIR SINE MIR -106 156 101 214 261 0 0 chr9 76939836 76939882 -40922745 + (CATG)n Simple_repeat Simple_repeat 1 46 0 2136 112 0 7 chr9 76940263 76940568 -40922059 - AluSx SINE Alu -9 303 1 266 258 54 21 chr9 76940598 76940691 -40921936 - MIR SINE MIR -81 181 86 258 32 0 0 chr9 76940790 76940821 -40921806 + (TG)n Simple_repeat Simple_repeat 1 31 0 * 387 41 0 0 chr9 76940820 76940869 -40921758 + (GA)n Simple_repeat Simple_repeat 1 49 0 448 235 8 59 chr9 76941894 76942013 -40920614 + MER81 DNA DNA 1 113 -1 1558 183 35 0 chr9 76942052 76942337 -40920290 - AluJb SINE Alu -17 295 1 256 216 27 54 chr9 76942732 76942806 -40919821 + MER5B DNA MER1_type 80 151 -27 678 170 176 30 chr9 76942853 76943018 -40919609 + MER5A DNA MER1_type 1 189 0 232 325 83 0 chr9 76943030 76943150 -40919477 + L1MC4a LINE L1 7265 7394 -414 3870 177 19 28 chr9 76943282 76943632 -40918995 + L1MB3 LINE L1 4981 5333 -850 3870 154 8 26 chr9 76943632 76943936 -40918691 + L1MB3 LINE L1 5530 5838 -345 1637 167 14 11 chr9 76943936 76944212 -40918415 + AluJo SINE Alu 36 312 0 3870 154 8 26 chr9 76944212 76944569 -40918058 + L1MB3 LINE L1 5838 6179 -4 3870 177 19 28 chr9 76944569 76944591 -40918036 + L1MB3 LINE L1 5333 6179 -4 875 277 59 59 chr9 76944606 76945046 -40917581 + L1MC5 LINE L1 7471 7910 -51 192 286 63 0 chr9 76945076 76945139 -40917488 + MIR SINE MIR 2 68 -194 567 226 27 99 chr9 76945144 76945365 -40917262 - MER3 DNA MER1_type -2 207 3 224 239 141 0 chr9 76945367 76945438 -40917189 + MIR SINE MIR 65 145 -117 646 257 170 0 chr9 76945452 76945658 -40916969 - MIR SINE MIR -1 261 21 243 350 30 10 chr9 76945654 76945754 -40916873 + MIR SINE MIR 159 260 -2 * 181 324 88 0 chr9 76946951 76947053 -40915574 + L2 LINE L2 3005 3115 -157 250 286 48 0 chr9 76947141 76947225 -40915402 + MIR SINE MIR 156 243 -19 2169 111 3 7 chr9 76947514 76947821 -40914806 - AluSx SINE Alu -6 306 1 237 282 24 24 chr9 76947824 76947909 -40914718 + MIR SINE MIR 58 142 -66 285 342 0 18 chr9 76948259 76948370 -40914257 - MIR3 SINE MIR -54 154 46 354 336 77 35 chr9 76948473 76948759 -40913868 - L2 LINE L2 -9 3263 2966 422 272 0 48 chr9 76949360 76949662 -40912965 + (CCCCAA)n Simple_repeat Simple_repeat 1 287 0 701 132 28 0 chr9 76950110 76950216 -40912411 + FLAM_C SINE Alu 9 117 -26 185 0 40 0 chr9 76950216 76950241 -40912386 + (CAAA)n Simple_repeat Simple_repeat 4 29 0 577 189 39 8 chr9 76950244 76950371 -40912256 - MER5A DNA MER1_type -58 131 1 205 331 80 46 chr9 76950378 76950529 -40912098 - MIR SINE MIR -40 222 67 181 299 15 30 chr9 76950766 76950833 -40911794 + MIR SINE MIR 2 67 -195 2090 73 32 60 chr9 76950915 76951230 -40911397 + AluSp SINE Alu 3 308 -5 495 206 151 20 chr9 76951304 76951450 -40911177 + MIR SINE MIR 91 255 -7 611 160 76 8 chr9 76951561 76951588 -40911039 + L1MB3 LINE L1 6044 6068 -115 2154 118 52 22 chr9 76951588 76951952 -40910675 + THE1C LTR MaLR 1 375 0 611 160 76 8 chr9 76951952 76952055 -40910572 + L1MB3 LINE L1 6068 6183 0 206 323 79 31 chr9 76952524 76952651 -40909976 + MIR3 SINE MIR 13 145 -63 703 248 151 5 chr9 76952763 76952981 -40909646 + MIR SINE MIR 8 257 -5 337 231 13 0 chr9 76953004 76953082 -40909545 - MIR SINE MIR 0 262 184 235 345 136 23 chr9 76953381 76953645 -40908982 - L3 LINE CR1 -36 1541 1248 186 274 53 63 chr9 76953880 76953975 -40908652 - MIR SINE MIR -85 123 30 1690 113 0 23 chr9 76954532 76954789 -40907838 - AluSx SINE Alu -3 309 59 752 259 64 118 chr9 76954879 76955100 -40907527 - Charlie7 DNA MER1_type -1927 685 454 1833 125 0 43 chr9 76955100 76955405 -40907222 - AluJo SINE Alu 0 312 21 752 259 64 118 chr9 76955405 76955867 -40906760 - Charlie7 DNA MER1_type -2158 454 39 498 277 32 13 chr9 76955902 76956057 -40906570 - MIR3 SINE MIR -7 201 44 236 188 78 16 chr9 76956166 76956230 -40906397 + MIR SINE MIR 111 178 -84 192 278 56 0 chr9 76956608 76956662 -40905965 + L2 LINE L2 2726 2782 -532 487 224 79 55 chr9 76956725 76956801 -40905826 + MER97b DNA MER1_type? 14 87 -966 2181 98 0 10 chr9 76956801 76957120 -40905507 + AluSg SINE Alu 1 310 0 487 224 79 55 chr9 76957120 76957208 -40905419 + MER97b DNA MER1_type? 87 182 -871 225 288 104 48 chr9 76957327 76957452 -40905175 + L2 LINE L2 2918 3049 -223 287 275 44 0 chr9 76957566 76957674 -40904953 + MIR SINE MIR 69 188 -20 238 269 90 45 chr9 76957785 76957941 -40904686 - L3 LINE CR1 -860 717 555 882 152 0 0 chr9 76958421 76958553 -40904074 - FLAM_C SINE Alu 0 133 2 288 312 53 24 chr9 76958712 76958882 -40903745 + L2 LINE L2 2890 3064 -208 278 254 14 0 chr9 76958964 76959035 -40903592 + MIR SINE MIR 69 140 -122 576 261 58 14 chr9 76959669 76959863 -40902764 + MIR SINE MIR 10 213 -49 403 202 130 7 chr9 76959875 76960026 -40902601 + MER104 DNA Tc2 1 177 -3 210 348 135 0 chr9 76960246 76960387 -40902240 - L3 LINE CR1 -525 1052 893 1272 209 60 36 chr9 76960624 76960756 -40901871 - MER2 DNA MER2_type -1 343 216 1997 139 0 3 chr9 76960756 76961044 -40901583 + AluSx SINE Alu 1 287 -25 1272 209 60 36 chr9 76961044 76961246 -40901381 - MER2 DNA MER2_type -128 216 1 527 126 225 27 chr9 76961307 76961418 -40901209 - FLAM_C SINE Alu 0 133 1 389 205 19 112 chr9 76961986 76962147 -40900480 - MIR SINE MIR -30 232 87 344 245 7 91 chr9 76962155 76962298 -40900329 + L2 LINE L2 2969 3099 -173 349 180 101 22 chr9 76962428 76962517 -40900110 - MIR SINE MIR -78 184 89 247 269 26 26 chr9 76963260 76963338 -40899289 + MIR SINE MIR 67 144 -64 362 275 7 0 chr9 76963456 76963565 -40899062 + MIR SINE MIR 45 154 -63 306 242 74 107 chr9 76963566 76963715 -40898912 + L1ME4a LINE L1 5966 6109 -12 2388 70 0 13 chr9 76964076 76964388 -40898239 + AluY SINE Alu 1 308 -3 1100 150 0 0 chr9 76964388 76964555 -40898072 + AluSg/x SINE Alu 134 300 -12 1882 157 19 6 chr9 76964557 76964876 -40897751 - MLT1A1 LTR MaLR -42 323 1 230 319 0 0 chr9 76964999 76965071 -40897556 + MIR SINE MIR 97 168 -94 892 267 85 55 chr9 76965104 76965561 -40897066 + L2 LINE L2 2805 3275 -38 2041 124 3 19 chr9 76965561 76965876 -40896751 + AluSx SINE Alu 1 310 -2 196 250 0 0 chr9 76965911 76965955 -40896672 + L2 LINE L2 3268 3311 -2 * 292 309 0 0 chr9 76965949 76966030 -40896597 + MIR SINE MIR 182 262 0 470 163 0 12 chr9 76966190 76966270 -40896357 - MER116 DNA Mariner 0 80 2 539 306 29 6 chr9 76966654 76966824 -40895803 - MIR3 SINE MIR -19 189 16 2303 96 0 0 chr9 76966962 76967263 -40895364 - AluSx SINE Alu -11 301 1 240 255 78 59 chr9 76967309 76967411 -40895216 - L1ME LINE L1 -455 5666 5563 592 229 87 38 chr9 76967539 76967722 -40894905 + MIR3 SINE MIR 15 206 -2 289 270 101 11 chr9 76968072 76968161 -40894466 - L3 LINE CR1 -107 1470 1374 239 291 169 0 chr9 76968479 76968651 -40893976 + L3 LINE CR1 1170 1370 -207 245 264 141 13 chr9 76969393 76969531 -40893096 - MIR SINE MIR -74 134 30 30 69 0 0 chr9 76969728 76969786 -40892841 + GC_rich Low_complexity Low_complexity 1 58 0 325 327 10 0 chr9 76970008 76970112 -40892515 + MIR SINE MIR 77 181 -81 594 247 104 6 chr9 76970380 76970562 -40892065 - MIR SINE MIR -28 234 35 263 231 0 77 chr9 76970619 76970710 -40891917 + L2 LINE L2 3228 3311 -2 306 218 57 81 chr9 76970717 76970841 -40891786 - MIR SINE MIR -41 221 101 2013 128 0 0 chr9 76971084 76971391 -40891236 + AluSx SINE Alu 1 307 0 1793 168 10 0 chr9 76971507 76971804 -40890823 - AluJb SINE Alu -12 300 1 203 333 71 0 chr9 76972236 76972335 -40890292 - MIR SINE MIR -121 141 36 222 324 67 13 chr9 76973299 76973446 -40889181 + MIR SINE MIR 11 162 -46 193 225 162 117 chr9 76973556 76973628 -40888999 - MER5B DNA MER1_type -59 119 39 2219 104 0 3 chr9 76973628 76973935 -40888692 - AluSq SINE Alu -7 306 1 193 225 162 117 chr9 76973935 76973973 -40888654 - MER5B DNA MER1_type -139 39 4 286 228 6 42 chr9 76974105 76974272 -40888355 + GA-rich Low_complexity Low_complexity 1 161 0 2304 84 0 0 chr9 76974489 76974785 -40887842 + AluSc SINE Alu 1 296 -13 313 242 50 30 chr9 76976309 76976408 -40886219 - MIR SINE MIR -76 132 32 416 230 20 122 chr9 76976841 76977055 -40885572 - L2 LINE L2 -170 3102 2912 2178 126 0 0 chr9 76977812 76978121 -40884506 + AluSx SINE Alu 1 309 -3 234 259 74 46 chr9 76978139 76978247 -40884380 - MIR SINE MIR -68 140 30 204 357 60 0 chr9 76978442 76978526 -40884101 - MIR SINE MIR -85 177 89 223 266 32 11 chr9 76979374 76979468 -40883159 + L2 LINE L2 1999 2094 -1220 656 245 60 25 chr9 76979639 76979839 -40882788 + L1MC5 LINE L1 7721 7927 -34 375 214 161 86 chr9 76979903 76980146 -40882481 + MLT1J LTR MaLR 106 366 -145 646 250 205 0 chr9 76980705 76980905 -40881722 + MIR SINE MIR 18 258 -4 390 339 57 5 chr9 76980903 76981095 -40881532 + MIR SINE MIR 58 259 -3 * 396 319 28 7 chr9 76981329 76981470 -40881157 - MER103 DNA DNA -1 165 22 245 395 0 0 chr9 76981909 76981990 -40880637 - MER117 DNA MER1_type 0 197 117 551 256 0 8 chr9 76981993 76982118 -40880509 - MER117 DNA MER1_type -35 162 39 523 279 6 43 chr9 76982120 76982281 -40880346 - MIR3 SINE MIR -49 159 5 1500 140 51 99 chr9 76982626 76982940 -40879687 - AluJb SINE Alu -13 299 1 1775 103 123 4 chr9 76983073 76983334 -40879293 - AluSg1 SINE Alu -17 292 1 181 250 19 0 chr9 76985221 76985273 -40877354 + MIR SINE MIR 20 72 -136 2143 122 28 9 chr9 76985369 76985696 -40876931 - MER1B DNA MER1_type 0 337 5 257 318 61 81 chr9 76986310 76986508 -40876119 + MIR SINE MIR 59 252 -10 650 79 9 26 chr9 76986797 76986911 -40875716 + (TTCC)n Simple_repeat Simple_repeat 1 112 0 1762 171 24 0 chr9 76986911 76987204 -40875423 - AluJb SINE Alu -12 300 1 194 315 109 0 chr9 76987214 76987306 -40875321 - MIR SINE MIR -66 142 41 772 267 43 0 chr9 76988152 76988380 -40874247 + MIR SINE MIR 6 241 -21 205 344 104 0 chr9 76988569 76988665 -40873962 + MIR SINE MIR 75 180 -82 2154 122 10 0 chr9 76988879 76989175 -40873452 - AluSx SINE Alu -13 299 1 498 268 84 40 chr9 76989184 76989559 -40873068 + L2 LINE L2 2609 3091 -181 2461 67 0 10 chr9 76989585 76989882 -40872745 - AluY SINE Alu -17 294 1 578 319 46 0 chr9 76990495 76990711 -40871916 + MIR SINE MIR 35 260 -2 354 280 45 90 chr9 76990754 76990954 -40871673 - L1ME2 LINE L1 -284 5880 5690 193 269 90 0 chr9 76990984 76991062 -40871565 + L3 LINE CR1 1424 1508 -69 548 247 38 6 chr9 76992437 76992595 -40870032 - MIR SINE MIR -60 202 40 1919 149 35 0 chr9 76992596 76992884 -40869743 - AluJo SINE Alu -14 298 1 745 263 110 0 chr9 76993111 76993320 -40869307 + MIR SINE MIR 9 240 -22 301 181 160 76 chr9 76993480 76993624 -40869003 - MIR SINE MIR -60 202 47 1730 169 36 7 chr9 76993773 76994074 -40868553 - AluJo SINE Alu -2 310 1 329 305 79 23 chr9 76994435 76994612 -40868015 + MIR3 SINE MIR 22 208 0 1660 189 6 16 chr9 76994782 76995094 -40867533 - AluJo SINE Alu -3 309 1 803 169 0 7 chr9 76995094 76995230 -40867397 - AluJo SINE Alu -177 135 1 2598 62 0 3 chr9 76995363 76995672 -40866955 + AluY SINE Alu 1 308 -3 956 181 0 0 chr9 76995771 76995926 -40866701 - AluSg/x SINE Alu -14 296 142 363 266 26 9 chr9 76996297 76996410 -40866217 - MIR SINE MIR -146 116 2 1364 186 24 0 chr9 76996534 76996786 -40865841 - Tigger3(Golem) DNA MER2_type -1 3028 2771 547 224 28 0 chr9 76996783 76996890 -40865737 - Tigger3(Golem) DNA MER2_type -2887 142 33 * 246 236 14 14 chr9 76997121 76997193 -40865434 + GA-rich Low_complexity Low_complexity 1 72 0 540 264 40 31 chr9 76997211 76997448 -40865179 + MIR SINE MIR 9 249 -13 557 292 76 16 chr9 76998470 76998720 -40863907 + MLT1J LTR MaLR 68 332 -179 1859 172 3 3 chr9 76998814 76999105 -40863522 - AluJb SINE Alu -19 293 3 433 235 107 64 chr9 76999256 76999443 -40863184 - MER117 DNA MER1_type 0 197 3 2507 41 14 3 chr9 77000996 77001287 -40861340 + AluY SINE Alu 1 294 -17 2170 140 0 0 chr9 77001387 77001694 -40860933 - AluJb SINE Alu -5 307 1 198 321 95 0 chr9 77002622 77002706 -40859921 + MIR SINE MIR 31 122 -86 218 218 18 18 chr9 77002873 77002928 -40859699 + L2 LINE L2 3133 3187 -85 310 169 17 0 chr9 77003605 77003664 -40858963 - MIR SINE MIR -117 145 86 541 232 45 19 chr9 77004341 77004496 -40858131 + L2 LINE L2 3150 3308 -5 2293 83 0 77 chr9 77004586 77004911 -40857716 + AluSx SINE Alu 1 300 -12 956 228 0 0 chr9 77006301 77006490 -40856137 - MER5A DNA MER1_type 0 189 1 1098 224 0 0 chr9 77006875 77007089 -40855538 + MER58A DNA MER1_type 11 224 0 1517 108 204 8 chr9 77007762 77008012 -40854615 + AluSg1 SINE Alu 1 299 -10 225 0 0 0 chr9 77008391 77008416 -40854211 + (T)n Simple_repeat Simple_repeat 1 25 0 1005 164 67 0 chr9 77008579 77008774 -40853853 + Tigger5 DNA MER2_type 2081 2288 -35 502 276 26 53 chr9 77008794 77008946 -40853681 + MIR SINE MIR 64 211 -51 1308 209 29 26 chr9 77008946 77009286 -40853341 + L1MB8 LINE L1 5838 6178 0 1783 145 57 3 chr9 77009433 77009729 -40852898 - AluJb SINE Alu 0 312 1 723 209 13 0 chr9 77009736 77009889 -40852738 - L1MD3 LINE L1 -10 7985 7831 232 77 51 0 chr9 77009887 77009926 -40852701 - L1MD2 LINE L1 -214 6145 6105 * 1332 134 0 0 chr9 77009928 77010114 -40852513 - AluSg/x SINE Alu -11 299 114 1414 175 45 29 chr9 77010115 77010423 -40852204 + MLT1A2 LTR MaLR 62 374 0 459 284 16 8 chr9 77010920 77011047 -40851580 + L2 LINE L2 3183 3310 -3 446 168 84 0 chr9 77011570 77011665 -40850962 - MER112 DNA MER1_type 0 260 158 2517 58 0 3 chr9 77012035 77012327 -40850300 + AluSg1 SINE Alu 1 291 -18 2344 93 0 7 chr9 77012864 77013166 -40849461 + AluY SINE Alu 1 300 -11 29 0 0 0 chr9 77013246 77013275 -40849352 + AT_rich Low_complexity Low_complexity 1 29 0 2232 120 3 0 chr9 77013335 77013634 -40848993 - AluSx SINE Alu -12 300 1 2094 127 7 33 chr9 77014166 77014473 -40848154 + AluSx SINE Alu 1 299 -13 419 51 0 51 chr9 77014672 77014731 -40847896 - AluSp SINE Alu -150 163 108 4845 209 54 53 chr9 77014733 77014920 -40847707 - L1M4 LINE L1 -1436 4710 4525 2437 115 0 0 chr9 77014920 77015232 -40847395 - AluSx SINE Alu 0 312 1 4845 209 54 53 chr9 77015232 77015758 -40846869 - L1M4 LINE L1 -1621 4525 4001 2189 96 61 0 chr9 77015758 77016051 -40846576 - AluSx SINE Alu -1 311 1 4845 209 54 53 chr9 77016051 77016073 -40846554 - L1M4 LINE L1 -2145 4001 3981 189 0 0 0 chr9 77016073 77016094 -40846533 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 1552 180 32 11 chr9 77016098 77016381 -40846246 - AluJo SINE Alu -23 289 1 4845 209 54 53 chr9 77016381 77017143 -40845484 - L1M4 LINE L1 -2167 3979 3205 296 24 24 0 chr9 77017182 77017223 -40845404 + (TG)n Simple_repeat Simple_repeat 2 43 0 205 243 14 57 chr9 77017500 77017570 -40845057 - MIR SINE MIR -1 261 195 339 133 33 0 chr9 77018008 77018068 -40844559 + MIR SINE MIR 86 147 -115 510 323 70 4 chr9 77018081 77018310 -40844317 - MIR SINE MIR -4 258 15 202 342 186 16 chr9 77018868 77019061 -40843566 + L2 LINE L2 2235 2460 -854 2307 116 0 3 chr9 77019188 77019499 -40843128 + AluSg SINE Alu 1 310 0 569 338 40 4 chr9 77019595 77019820 -40842807 - MIR SINE MIR -6 256 24 1386 171 130 7 chr9 77019839 77020108 -40842519 - AluJb SINE Alu 0 302 1 28 0 0 0 chr9 77020161 77020189 -40842438 + AT_rich Low_complexity Low_complexity 1 28 0 305 258 32 0 chr9 77020197 77020290 -40842337 - L1MA10 LINE L1 -18 6316 6221 260 225 38 0 chr9 77020319 77020399 -40842228 + L1ME4a LINE L1 5955 6037 -84 422 114 0 51 chr9 77020421 77020500 -40842127 - FRAM/FAM SINE Alu -109 67 1 2469 93 0 0 chr9 77020563 77020865 -40841762 - AluSq SINE Alu -11 302 1 2024 117 3 3 chr9 77021405 77021687 -40840940 + AluSp SINE Alu 1 282 -31 1081 48 0 0 chr9 77021803 77021929 -40840698 + AluSp/q SINE Alu 182 307 -6 660 274 99 32 chr9 77021944 77022204 -40840423 + L1ME4a LINE L1 5628 5869 -252 2518 87 0 0 chr9 77022204 77022515 -40840112 + AluY SINE Alu 1 311 0 660 274 99 32 chr9 77022515 77022532 -40840095 + L1ME4a LINE L1 5869 5883 -238 1888 166 7 0 chr9 77022532 77022827 -40839800 + AluJb SINE Alu 1 297 -15 660 274 99 32 chr9 77022827 77023011 -40839616 + L1ME4a LINE L1 5883 6121 0 227 266 76 32 chr9 77023110 77023268 -40839359 + L1ME4a LINE L1 5926 6090 -31 21 0 0 0 chr9 77023546 77023567 -40839060 + AT_rich Low_complexity Low_complexity 1 21 0 199 292 62 52 chr9 77023920 77024016 -40838611 - L2 LINE L2 -216 3056 2960 2350 99 3 10 chr9 77024291 77024603 -40838024 + AluSx SINE Alu 1 310 -2 2345 99 0 3 chr9 77024692 77024996 -40837631 + AluY SINE Alu 1 303 -8 29 28 0 0 chr9 77025066 77025102 -40837525 + AT_rich Low_complexity Low_complexity 1 36 0 226 270 70 20 chr9 77025160 77025260 -40837367 - L3 LINE CR1 -183 1394 1290 249 307 23 11 chr9 77025284 77025372 -40837255 - MIR SINE MIR -122 140 52 672 292 36 5 chr9 77025795 77025999 -40836628 + MIR SINE MIR 22 231 -31 291 263 0 0 chr9 77027045 77027121 -40835506 - MIR SINE MIR -4 258 183 2438 74 0 23 chr9 77028250 77028549 -40834078 + AluSg1 SINE Alu 1 292 -17 833 243 77 21 chr9 77028666 77028901 -40833726 - MIR SINE MIR 0 262 15 462 246 109 0 chr9 77029358 77029496 -40833131 + MIR SINE MIR 99 251 -11 211 321 0 0 chr9 77029462 77029515 -40833112 + L2 LINE L2 3261 3313 0 * 192 235 284 0 chr9 77029863 77029944 -40832683 - MIR SINE MIR -60 148 45 418 293 23 15 chr9 77030329 77030462 -40832165 - L2 LINE L2 0 3272 3139 213 293 120 15 chr9 77030601 77030734 -40831893 + L2 LINE L2 2554 2700 -614 186 259 89 9 chr9 77030863 77030975 -40831652 + L2 LINE L2 2935 3055 -217 453 278 132 14 chr9 77031585 77031797 -40830830 - MIR SINE MIR -6 256 20 306 296 39 31 chr9 77032112 77032289 -40830338 + MIR SINE MIR 32 210 -52 1551 133 82 17 chr9 77033590 77033883 -40828744 - AluJb SINE Alu 0 312 1 473 204 84 35 chr9 77034413 77034555 -40828072 + MER69 DNA AcHobo 2378 2526 0 862 71 0 0 chr9 77034632 77034744 -40827883 - AluSp/q SINE Alu -16 297 186 1807 95 95 7 chr9 77034775 77035060 -40827567 - AluSg SINE Alu 0 310 1 394 268 23 2 chr9 77035320 77035435 -40827192 + L1M4 LINE L1 4490 4612 -1534 2060 123 7 0 chr9 77035437 77035738 -40826889 - AluSx SINE Alu -9 303 1 761 218 91 95 chr9 77035747 77035912 -40826715 - L1MD3 LINE L1 0 8042 7878 1471 61 0 0 chr9 77035912 77036092 -40826535 + AluY SINE Alu 1 180 -131 761 218 91 95 chr9 77036092 77036533 -40826094 - L1MD3 LINE L1 -164 7878 7519 2173 112 0 3 chr9 77036533 77036845 -40825782 - AluSx SINE Alu -1 311 1 761 218 91 95 chr9 77036845 77037043 -40825584 - L1MD3 LINE L1 -523 7519 7322 1782 131 0 72 chr9 77037119 77037454 -40825173 - AluJo SINE Alu -1 311 1 393 321 47 42 chr9 77037557 77037747 -40824880 - L2 LINE L2 -4 3309 3119 1846 214 6 3 chr9 77037883 77038247 -40824380 - MLT1A1 LTR MaLR 0 365 1 628 182 25 17 chr9 77038284 77038478 -40824149 + L1MB4 LINE L1 5841 6031 -140 1979 145 3 0 chr9 77038478 77038789 -40823838 - AluJb SINE Alu 0 312 1 1956 131 14 0 chr9 77038795 77039092 -40823535 - AluSx SINE Alu -1 311 11 2560 178 31 14 chr9 77039124 77039640 -40822987 - L1MA10 LINE L1 0 6334 5810 1879 124 18 0 chr9 77039983 77040258 -40822369 + AluSx SINE Alu 1 280 -32 1405 122 104 0 chr9 77040273 77040495 -40822132 + MLT1B LTR MaLR 146 390 0 264 291 75 52 chr9 77040784 77040918 -40821709 + MIR SINE MIR 95 231 -31 510 269 111 18 chr9 77042333 77042504 -40820123 + MIR SINE MIR 32 218 -44 2592 68 119 27 chr9 77042536 77042946 -40819681 - LTR7 LTR ERV1 -2 448 1 2272 119 48 13 chr9 77042946 77043325 -40819302 - HERVH LTR ERV1 0 7713 7322 1219 132 78 0 chr9 77043323 77043527 -40819100 - HERVH LTR ERV1 -1894 5819 5600 * 4351 137 0 35 chr9 77043528 77043711 -40818916 - HERVH LTR ERV1 -2564 5149 4961 2816 3 0 0 chr9 77043711 77044022 -40818605 - AluYa5 SINE Alu 0 311 1 4351 137 0 35 chr9 77044022 77044524 -40818103 - HERVH LTR ERV1 -2752 4961 4488 15016 102 7 24 chr9 77044526 77047606 -40815021 - HERVH LTR ERV1 -3720 3993 793 2939 110 31 22 chr9 77047768 77048223 -40814404 - HERVH LTR ERV1 -7254 459 1 2030 92 37 7 chr9 77048225 77048519 -40814108 - LTR7 LTR ERV1 -2 448 146 333 324 168 62 chr9 77049421 77049643 -40812984 - L3 LINE CR1 -30 1547 1350 2140 110 0 0 chr9 77049643 77049935 -40812692 - AluSg SINE Alu -18 292 1 333 324 168 62 chr9 77049935 77050098 -40812529 - L3 LINE CR1 -227 1350 1121 303 232 161 39 chr9 77050959 77051047 -40811580 - L1MC4a LINE L1 -1934 5874 5798 2710 83 100 5 chr9 77051047 77051456 -40811171 - LTR7 LTR ERV1 -2 448 1 303 232 161 39 chr9 77051456 77051522 -40811105 - L1MC4a LINE L1 -2010 5798 5701 702 134 0 45 chr9 77051548 77051660 -40810967 - FLAM_C SINE Alu -28 115 9 1438 198 26 61 chr9 77051762 77052131 -40810496 + MLT1A1 LTR MaLR 1 443 -14 2728 63 133 5 chr9 77052131 77052528 -40810099 - LTR7 LTR ERV1 -2 448 1 1438 198 26 61 chr9 77052528 77052539 -40810088 + MLT1A1 LTR MaLR 443 453 -4 1189 259 119 33 chr9 77052606 77053024 -40809603 + L1MB8 LINE L1 3105 3486 -2660 878 135 0 23 chr9 77053024 77053157 -40809470 + FLAM_C SINE Alu 1 130 -3 1189 259 119 33 chr9 77053157 77053518 -40809109 + L1MB8 LINE L1 3486 3951 -2195 3825 174 50 50 chr9 77053764 77054275 -40808352 + L1MB8 LINE L1 4783 5292 -886 1474 173 17 20 chr9 77054275 77054575 -40808052 + AluJo SINE Alu 2 300 -12 3825 174 50 50 chr9 77054575 77055395 -40807232 + L1MB8 LINE L1 5292 6126 -52 1543 153 4 4 chr9 77055431 77055679 -40806948 - AluJo SINE Alu -64 248 1 393 152 0 0 chr9 77055679 77055745 -40806882 + L1MB8 LINE L1 6111 6176 -2 251 254 18 0 chr9 77056947 77057002 -40805625 + CT-rich Low_complexity Low_complexity 1 56 0 477 303 45 6 chr9 77057843 77058021 -40804606 + MIR SINE MIR 30 214 -48 424 159 14 0 chr9 77058510 77058579 -40804048 - AluJ/FRAM SINE Alu -23 289 220 513 180 23 8 chr9 77058633 77058761 -40803866 + CT-rich Low_complexity Low_complexity 2 131 0 1535 162 26 16 chr9 77058765 77059074 -40803553 - AluJo SINE Alu 0 312 1 379 119 50 38 chr9 77059660 77059820 -40802807 + (TA)n Simple_repeat Simple_repeat 1 162 0 1943 101 4 0 chr9 77059820 77060087 -40802540 - AluSx SINE Alu -44 268 1 2106 114 0 3 chr9 77060333 77060630 -40801997 - AluSq SINE Alu -17 296 1 365 310 134 6 chr9 77060939 77061110 -40801517 - MIR SINE MIR -24 238 46 501 223 87 125 chr9 77061367 77061422 -40801205 - MER45A DNA AcHobo -1404 177 121 1516 152 6 86 chr9 77061422 77061758 -40800869 + AluJo SINE Alu 1 309 -3 501 223 87 125 chr9 77061758 77061886 -40800741 - MER45A DNA AcHobo -1460 121 1 205 337 139 0 chr9 77061970 77062071 -40800556 + L2 LINE L2 3180 3294 -19 463 274 54 12 chr9 77062588 77062756 -40799871 - MLT1K LTR MaLR -9 579 405 330 316 96 6 chr9 77063619 77063796 -40798831 + MIR3 SINE MIR 8 200 -8 325 267 0 0 chr9 77064608 77064683 -40797944 - MLT1K LTR MaLR -2 586 512 271 250 0 0 chr9 77064789 77064849 -40797778 - MLT1K LTR MaLR -341 247 188 259 226 0 19 chr9 77065085 77065138 -40797489 - MLT1K LTR MaLR -349 239 188 542 193 40 50 chr9 77066456 77066637 -40795990 - MIR3 SINE MIR -49 159 19 264 30 0 0 chr9 77067486 77067519 -40795108 + (T)n Simple_repeat Simple_repeat 1 33 0 249 327 10 30 chr9 77068119 77068220 -40794407 - L2 LINE L2 0 3313 3215 1674 89 42 4 chr9 77068269 77068506 -40794121 - Tigger5 DNA MER2_type -1 2322 2077 345 151 0 0 chr9 77068495 77068548 -40794079 - Tigger5 DNA MER2_type -2244 79 27 * 224 293 75 19 chr9 77068949 77069055 -40793572 + L2 LINE L2 2921 3032 -240 263 269 65 0 chr9 77069494 77069587 -40793040 - MIR SINE MIR -108 154 56 398 291 75 8 chr9 77070021 77070155 -40792472 - L2 LINE L2 -1 3312 3170 789 256 141 7 chr9 77070425 77070695 -40791932 + L2 LINE L2 3008 3313 0 431 375 10 5 chr9 77070736 77070928 -40791699 + MIR SINE MIR 14 206 -56 794 234 50 53 chr9 77071547 77071722 -40790905 + L1ME4a LINE L1 5528 5703 -418 1585 143 71 18 chr9 77071722 77072002 -40790625 - AluSx SINE Alu -17 295 1 794 234 50 53 chr9 77072002 77072125 -40790502 + L1ME4a LINE L1 5703 5825 -296 282 324 49 10 chr9 77072136 77072238 -40790389 - MER5B DNA MER1_type -7 171 66 648 264 134 63 chr9 77072245 77072295 -40790332 - L1MC/D LINE L1 -743 5403 5358 2932 182 27 62 chr9 77072295 77072760 -40789867 - MER82 DNA MER2_type 0 653 218 2098 90 3 3 chr9 77072760 77073048 -40789579 - AluSc SINE Alu -21 288 1 2932 182 27 62 chr9 77073048 77073259 -40789368 - MER82 DNA MER2_type -435 218 1 648 264 134 63 chr9 77073259 77073270 -40789357 - L1MC/D LINE L1 -788 5358 5349 1696 176 18 89 chr9 77073270 77073663 -40788964 + MLT1A1 LTR MaLR 1 365 0 648 264 134 63 chr9 77073663 77074404 -40788223 - L1MC/D LINE L1 -797 5349 4858 2329 93 0 6 chr9 77074553 77074865 -40787762 + AluSq SINE Alu 1 310 -3 1959 103 0 62 chr9 77074964 77075284 -40787343 + AluSx SINE Alu 1 300 -12 534 324 113 10 chr9 77075348 77075746 -40786881 - L1MC4a LINE L1 -117 6004 5566 839 151 0 29 chr9 77075842 77075981 -40786646 - FLAM_C SINE Alu -7 136 2 420 239 94 72 chr9 77076250 77076430 -40786197 + MIR3 SINE MIR 3 186 -22 626 237 82 10 chr9 77076870 77077077 -40785550 + MIR SINE MIR 19 240 -22 1772 157 0 4 chr9 77077108 77077388 -40785239 - AluJo SINE Alu -33 279 1 838 156 0 0 chr9 77077541 77077669 -40784958 - FLAM_C SINE Alu -5 128 1 4176 161 90 38 chr9 77077790 77078675 -40783952 + MER21A LTR ERV1 1 931 0 356 341 31 45 chr9 77078751 77078974 -40783653 + L3 LINE CR1 1254 1473 -104 881 200 27 5 chr9 77079168 77079353 -40783274 + MER53 DNA DNA 1 189 0 297 314 104 62 chr9 77079385 77079742 -40782885 + MLT1J LTR MaLR 99 470 -41 399 270 18 0 chr9 77080756 77080867 -40781760 + MIR SINE MIR 18 130 -78 545 152 0 0 chr9 77081112 77081191 -40781436 - MLT1E1 LTR MaLR -41 613 535 1631 172 0 7 chr9 77082015 77082294 -40780333 - AluJb SINE Alu -35 277 1 1800 135 31 7 chr9 77082754 77083042 -40779585 + AluJb SINE Alu 1 295 -17 323 223 100 62 chr9 77083115 77083245 -40779382 + L1ME4a LINE L1 5987 6121 0 350 315 44 16 chr9 77083848 77084013 -40778614 - MIR3 SINE MIR -28 180 9 1440 217 89 35 chr9 77084051 77084457 -40778170 + MLT1J LTR MaLR 82 509 -2 604 239 38 52 chr9 77084788 77085001 -40777626 + MIR SINE MIR 2 211 -51 1682 122 0 0 chr9 77085173 77085410 -40777217 + AluSx SINE Alu 1 237 -75 686 310 20 62 chr9 77085479 77085645 -40776982 + L3 LINE CR1 1233 1378 -199 1208 228 80 51 chr9 77085645 77086096 -40776531 + MLT1C LTR MaLR 4 467 0 686 310 20 62 chr9 77086096 77086287 -40776340 + L3 LINE CR1 1378 1575 -2 363 291 43 28 chr9 77086688 77086829 -40775798 - L3 LINE CR1 -127 1450 1308 2118 103 3 0 chr9 77087476 77087768 -40774859 - AluSp SINE Alu -19 294 2 337 233 55 0 chr9 77087829 77087902 -40774725 + MIR SINE MIR 74 150 -112 550 265 118 0 chr9 77088021 77088191 -40774436 + MIR SINE MIR 25 214 -48 323 314 147 6 chr9 77088627 77088783 -40773844 + L2 LINE L2 3093 3270 -2 4336 210 86 14 chr9 77089208 77089985 -40772642 - L1MC4 LINE L1 -132 7910 7028 1850 140 14 0 chr9 77089985 77090271 -40772356 - AluSx SINE Alu -22 290 1 4336 210 86 14 chr9 77090271 77090603 -40772024 - L1MC4 LINE L1 -1014 7028 6721 601 282 11 5 chr9 77090637 77090854 -40771773 - L1MC4a LINE L1 -1249 6559 6350 216 197 66 16 chr9 77092219 77092280 -40770347 - L3 LINE CR1 -655 922 859 2326 84 0 0 chr9 77093377 77093673 -40768954 - AluSp SINE Alu -17 296 1 180 0 0 0 chr9 77093728 77093748 -40768879 + (TTCA)n Simple_repeat Simple_repeat 4 23 0 378 295 76 0 chr9 77093749 77093854 -40768773 - L2 LINE L2 -11 3302 3190 659 265 79 28 chr9 77093945 77094160 -40768467 - MIR SINE MIR -15 247 22 378 281 20 55 chr9 77094647 77094793 -40767834 + MIR3 SINE MIR 5 145 -63 967 292 44 73 chr9 77094886 77095366 -40767261 - L2 LINE L2 0 3313 2848 273 195 297 17 chr9 77095396 77095514 -40767113 - MER5A DNA MER1_type -35 154 4 358 139 23 0 chr9 77096082 77096168 -40766459 + (TG)n Simple_repeat Simple_repeat 2 89 0 358 324 97 0 chr9 77096276 77096421 -40766206 + MIR3 SINE MIR 6 164 -44 327 253 57 95 chr9 77096728 77096886 -40765741 - MER20B DNA MER1_type 0 219 68 7814 24 0 4 chr9 77097107 77098217 -40764410 + L1PA3 LINE L1 5050 6155 0 433 321 24 49 chr9 77100158 77100404 -40762223 - MIR SINE MIR -11 251 12 283 282 53 47 chr9 77101195 77101365 -40761262 - MIR SINE MIR -71 191 21 387 0 0 0 chr9 77101715 77101758 -40760869 + (CA)n Simple_repeat Simple_repeat 2 44 0 216 97 0 0 chr9 77102145 77102176 -40760451 + (CA)n Simple_repeat Simple_repeat 2 32 0 588 261 9 66 chr9 77102260 77102471 -40760156 - L3 LINE CR1 -74 1503 1305 2228 122 0 0 chr9 77102496 77102807 -40759820 - AluSx SINE Alu -1 311 1 248 233 0 17 chr9 77103041 77103101 -40759526 + (CA)n Simple_repeat Simple_repeat 1 59 0 364 230 58 43 chr9 77103506 77103645 -40758982 - MIR SINE MIR -57 205 65 263 212 20 111 chr9 77103680 77103779 -40758848 + MLT1J2 LTR MaLR 73 162 -288 305 311 17 34 chr9 77103840 77103959 -40758668 + MLT1J2 LTR MaLR 304 420 -30 563 335 25 15 chr9 77103986 77104189 -40758438 - MIR SINE MIR -11 251 47 319 217 0 149 chr9 77104719 77104802 -40757825 + MER103 DNA DNA 2 48 -118 2106 96 7 0 chr9 77104802 77105110 -40757517 + AluSx SINE Alu 1 310 0 319 217 0 149 chr9 77105110 77105200 -40757427 + MER103 DNA DNA 48 150 -16 792 233 76 24 chr9 77106082 77106292 -40756335 + MIR SINE MIR 7 227 -35 335 241 48 0 chr9 77106508 77106591 -40756036 + MIR3 SINE MIR 113 199 -9 221 143 14 43 chr9 77107027 77107097 -40755530 + CT-rich Low_complexity Low_complexity 2 69 0 352 172 162 30 chr9 77107648 77107747 -40754880 + MLT1K LTR MaLR 458 569 -19 3112 166 31 15 chr9 77107960 77108549 -40754078 - L1MB7 LINE L1 -21 6163 5566 231 36 0 0 chr9 77108609 77108637 -40753990 + (T)n Simple_repeat Simple_repeat 1 28 0 351 307 167 27 chr9 77108715 77108865 -40753762 + L2 LINE L2 3102 3272 0 185 255 196 54 chr9 77109269 77109453 -40753174 + MIR SINE MIR 1 210 -52 589 242 88 21 chr9 77109584 77109778 -40752849 - MIR SINE MIR -6 256 50 198 344 56 32 chr9 77110384 77110509 -40752118 - MIR SINE MIR -8 254 127 1420 222 78 47 chr9 77110522 77110968 -40751659 - MLT1C LTR MaLR -2 465 6 338 256 85 0 chr9 77110972 77111054 -40751573 - MIR SINE MIR -162 100 12 1070 164 5 26 chr9 77111071 77111266 -40751361 + MIR SINE MIR 72 262 0 314 308 133 0 chr9 77111424 77111567 -40751060 + L1M4 LINE L1 3303 3464 -2682 251 287 26 70 chr9 77111602 77111717 -40750910 + MIR SINE MIR 41 150 -58 561 243 77 35 chr9 77112685 77112854 -40749773 + MER5B DNA MER1_type 1 176 -2 225 0 0 0 chr9 77112880 77112905 -40749722 + (CAA)n Simple_repeat Simple_repeat 1 25 0 195 167 0 0 chr9 77113055 77113097 -40749530 + (TTCA)n Simple_repeat Simple_repeat 2 43 0 870 292 129 12 chr9 77113097 77113635 -40748992 - L2 LINE L2 0 3313 2694 2227 82 3 3 chr9 77113639 77113931 -40748696 + AluSg SINE Alu 1 292 -18 710 172 49 26 chr9 77113939 77114106 -40748521 + L1MB7 LINE L1 2342 2512 -3870 451 231 19 0 chr9 77114130 77114238 -40748389 + L1MB7 LINE L1 4386 4495 -1887 2084 122 0 0 chr9 77114238 77114534 -40748093 + AluSx SINE Alu 1 296 -16 4575 185 21 16 chr9 77114534 77114974 -40747653 + L1MB7 LINE L1 4707 5143 -1277 1656 113 88 28 chr9 77114974 77115257 -40747370 + AluSx SINE Alu 3 302 -10 4575 185 21 16 chr9 77115257 77116506 -40746121 + L1MB7 LINE L1 5143 6404 -16 261 326 21 0 chr9 77116741 77116836 -40745791 - L2 LINE L2 -707 2607 2511 576 178 15 89 chr9 77116900 77117035 -40745592 - L2 LINE L2 -2 3311 3187 635 289 39 27 chr9 77117082 77117452 -40745175 + MLT1I LTR MaLR 5 409 0 902 159 0 0 chr9 77117641 77117773 -40744854 - FLAM_C SINE Alu 0 133 2 22 0 0 0 chr9 77118051 77118073 -40744554 + AT_rich Low_complexity Low_complexity 1 22 0 183 314 76 19 chr9 77119064 77119169 -40743458 - L2 LINE L2 -216 3056 2946 606 293 102 73 chr9 77119169 77119714 -40742913 - L2 LINE L2 -4 3268 2709 2226 91 10 0 chr9 77120792 77121099 -40741528 + AluY SINE Alu 1 310 -1 1378 241 64 13 chr9 77121140 77121530 -40741097 + L2 LINE L2 1927 2336 -978 655 318 102 43 chr9 77121861 77122515 -40740112 + L2 LINE L2 2040 2732 -582 1579 209 7 0 chr9 77122713 77123015 -40739612 + L1MC2 LINE L1 4034 4337 -1809 4027 131 24 5 chr9 77123015 77123639 -40738988 - Tigger1 DNA MER2_type 0 2418 1783 15886 184 44 15 chr9 77123648 77124983 -40737644 - L1MA5 LINE L1 0 7002 5707 2310 142 19 6 chr9 77124983 77125342 -40737285 + THE1B LTR MaLR 1 364 0 15886 184 44 15 chr9 77125342 77126559 -40736068 - L1MA5 LINE L1 -1295 5707 4527 2037 93 34 10 chr9 77126559 77126850 -40735777 - AluSg SINE Alu -10 300 3 15886 184 44 15 chr9 77126850 77130417 -40732210 - L1MA5 LINE L1 -2475 4527 187 11712 117 12 22 chr9 77130446 77130901 -40731726 - Tigger1 DNA MER2_type -627 1791 1333 2097 115 34 52 chr9 77130901 77131283 -40731344 + THE1C LTR MaLR 1 375 0 11712 117 12 22 chr9 77131283 77132613 -40730014 - Tigger1 DNA MER2_type -1085 1333 24 5575 170 78 26 chr9 77132622 77134527 -40728100 + L1MC2 LINE L1 4339 6333 -11 27 0 0 0 chr9 77134532 77134559 -40728068 + AT_rich Low_complexity Low_complexity 1 27 0 1863 171 20 0 chr9 77134564 77134869 -40727758 + AluJb SINE Alu 2 312 0 871 311 42 16 chr9 77135113 77135560 -40727067 - L1ME3A LINE L1 -219 5951 5493 356 314 62 53 chr9 77135621 77135847 -40726780 + L2 LINE L2 3016 3243 -29 1135 200 18 23 chr9 77136098 77136318 -40726309 + MIR SINE MIR 23 241 -21 2039 139 0 7 chr9 77136343 77136654 -40725973 + AluSx SINE Alu 1 309 0 718 230 0 0 chr9 77138414 77138549 -40724078 + MIR SINE MIR 68 202 -60 192 328 43 26 chr9 77140125 77140241 -40722386 + L2 LINE L2 2716 2833 -481 404 311 44 7 chr9 77140303 77140438 -40722189 + L2 LINE L2 2918 3057 -215 645 329 88 4 chr9 77140521 77140749 -40721878 - MIR SINE MIR -3 259 13 224 366 99 15 chr9 77140778 77140909 -40721718 + L2 LINE L2 3127 3268 -4 239 321 36 22 chr9 77141537 77141674 -40720953 + L2 LINE L2 2904 3042 -230 2149 127 10 13 chr9 77141800 77142099 -40720528 - AluSx SINE Alu -14 298 1 368 258 21 10 chr9 77142137 77142234 -40720393 + MIR SINE MIR 47 144 -118 657 315 55 21 chr9 77142298 77142533 -40720094 + MIR SINE MIR 20 262 0 502 224 30 118 chr9 77142791 77143028 -40719599 - L2 LINE L2 0 3313 3098 445 267 110 0 chr9 77143233 77143379 -40719248 + MIR SINE MIR 12 173 -89 306 222 198 0 chr9 77143455 77143536 -40719091 + MER58A DNA MER1_type 1 97 -10 487 281 0 7 chr9 77143616 77143751 -40718876 + MER58A DNA MER1_type 91 224 0 21 0 0 0 chr9 77144496 77144517 -40718110 + AT_rich Low_complexity Low_complexity 1 21 0 1067 131 37 23 chr9 77144553 77144767 -40717860 + L1MB3 LINE L1 5874 6090 -93 392 96 82 14 chr9 77145128 77145201 -40717426 - L1MB4 LINE L1 -1 6179 6102 239 287 0 0 chr9 77145468 77145555 -40717072 + A-rich Low_complexity Low_complexity 1 87 0 393 280 83 0 chr9 77146019 77146151 -40716476 - MER5A DNA MER1_type 0 189 47 396 291 67 12 chr9 77146185 77146350 -40716277 - MER5B DNA MER1_type -4 174 1 363 299 71 16 chr9 77146698 77146825 -40715802 - MIR3 SINE MIR -62 146 13 618 342 86 25 chr9 77148193 77148626 -40714001 + L2 LINE L2 2809 3267 -5 204 125 0 0 chr9 77150148 77150180 -40712447 + (T)n Simple_repeat Simple_repeat 1 32 0 197 174 0 22 chr9 77150403 77150449 -40712178 + (TTCA)n Simple_repeat Simple_repeat 4 48 0 278 267 126 30 chr9 77150558 77150693 -40711934 - MIR3 SINE MIR -57 151 4 558 204 83 125 chr9 77150973 77151051 -40711576 - Charlie7 DNA MER1_type -2071 541 461 2009 171 0 3 chr9 77151051 77151360 -40711267 - AluJo SINE Alu -4 308 1 558 204 83 125 chr9 77151360 77151570 -40711057 - Charlie7 DNA MER1_type -2151 461 265 3133 174 16 7 chr9 77151570 77152123 -40710504 + MER68 LTR ERV1 1 558 -4 366 325 72 69 chr9 77152340 77152716 -40709911 + L2 LINE L2 2842 3218 -54 265 389 7 34 chr9 77152732 77152881 -40709746 + L3 LINE CR1 1409 1553 -24 428 256 24 89 chr9 77152884 77153052 -40709575 + L3 LINE CR1 1415 1571 -6 343 283 50 0 chr9 77154195 77154294 -40708333 - MER91A DNA MER1_type -92 104 1 180 363 54 64 chr9 77154628 77154832 -40707795 + L2 LINE L2 3071 3272 0 312 278 89 0 chr9 77155759 77155849 -40706778 + MER5A DNA MER1_type 4 101 -88 552 252 22 0 chr9 77155955 77156094 -40706533 + L1ME3A LINE L1 5995 6136 -34 2319 120 0 0 chr9 77156470 77156771 -40705856 - AluSx SINE Alu -11 301 1 292 271 57 0 chr9 77156796 77156866 -40705761 - L3 LINE CR1 -453 1124 1051 668 163 142 0 chr9 77156883 77157024 -40705603 - MIR SINE MIR -1 261 101 330 141 99 0 chr9 77157032 77157103 -40705524 + L1MB8 LINE L1 6101 6178 0 530 274 132 11 chr9 77158353 77158543 -40704084 - MIR SINE MIR -45 217 5 2227 82 3 10 chr9 77159525 77159817 -40702810 - AluY SINE Alu -21 290 1 2238 109 3 3 chr9 77160141 77160443 -40702184 - AluSp SINE Alu -11 302 1 2140 84 4 11 chr9 77161551 77161825 -40700802 + AluSp SINE Alu 41 312 -1 614 192 37 38 chr9 77161937 77162161 -40700466 + MER106B DNA MER1_type 8 1057 -2 1313 157 5 19 chr9 77162415 77162625 -40700002 - AluJb SINE Alu -21 291 85 186 222 0 0 chr9 77163021 77163057 -40699570 - L2 LINE L2 -2 3270 3235 228 283 131 10 chr9 77164068 77164167 -40698460 + MIR SINE MIR 34 144 -64 195 42 0 0 chr9 77164432 77164456 -40698171 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 786 153 15 15 chr9 77164849 77164980 -40697647 + FLAM_C SINE Alu 3 133 0 200 57 0 29 chr9 77164983 77165018 -40697609 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 428 245 91 35 chr9 77165650 77165793 -40696834 - MER103 DNA DNA -8 158 8 393 22 0 0 chr9 77165822 77165868 -40696759 + (TG)n Simple_repeat Simple_repeat 1 46 0 2347 113 3 0 chr9 77167297 77167607 -40695020 + AluSx SINE Alu 1 311 -1 277 42 21 42 chr9 77168238 77168286 -40694341 + (TTCA)n Simple_repeat Simple_repeat 4 50 0 469 282 159 18 chr9 77168430 77168657 -40693970 - MIR SINE MIR -2 260 2 370 286 138 45 chr9 77168686 77169199 -40693428 - L2 LINE L2 -151 3121 2579 1110 173 5 5 chr9 77169997 77170448 -40692179 + (TCCA)n Simple_repeat Simple_repeat 1 451 0 860 172 0 6 chr9 77170585 77170765 -40691862 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 852 180 0 0 chr9 77170780 77171009 -40691618 + (TCCA)n Simple_repeat Simple_repeat 1 229 0 264 362 99 40 chr9 77171017 77171340 -40691287 - L2 LINE L2 0 3272 2931 891 295 164 28 chr9 77171950 77172584 -40690043 - L3 LINE CR1 -96 1481 762 551 330 104 34 chr9 77172579 77173310 -40689317 - L2 LINE L2 -703 2611 1830 * 231 319 50 25 chr9 77173476 77173595 -40689032 - MIR SINE MIR -69 139 18 251 367 61 15 chr9 77174421 77174617 -40688010 - MIR SINE MIR -50 212 8 237 222 0 0 chr9 77174629 77174674 -40687953 - L2 LINE L2 -3 3310 3266 427 197 13 0 chr9 77174828 77174904 -40687723 - L2 LINE L2 0 3272 3196 250 366 0 0 chr9 77174962 77175055 -40687572 + MIR SINE MIR 167 259 -3 248 297 152 18 chr9 77175840 77176005 -40686622 + MIR3 SINE MIR 21 207 -1 * 372 319 65 5 chr9 77175996 77176181 -40686446 - L3 LINE CR1 -181 1396 1201 415 271 33 121 chr9 77176482 77176566 -40686061 + L2 LINE L2 2939 3029 -243 2320 111 7 0 chr9 77176566 77176864 -40685763 + AluSg SINE Alu 1 300 -10 415 271 33 121 chr9 77176864 77177111 -40685516 + L2 LINE L2 3029 3241 -31 543 321 69 38 chr9 77177136 77177384 -40685243 + L1ME2 LINE L1 5079 5318 -846 1768 146 3 72 chr9 77177384 77177719 -40684908 + AluJo SINE Alu 1 312 0 543 321 69 38 chr9 77177719 77178275 -40684352 + L1ME2 LINE L1 5318 5907 -257 274 180 40 0 chr9 77178794 77178844 -40683783 + L3 LINE CR1 1422 1473 -104 234 238 124 57 chr9 77179318 77179423 -40683204 + L2 LINE L2 3153 3264 -8 1009 258 35 3 chr9 77180014 77180301 -40682326 - LTR16C LTR ERVL -31 460 165 2516 82 0 0 chr9 77180506 77180809 -40681818 + AluSg SINE Alu 1 303 -7 505 201 34 54 chr9 77180921 77181070 -40681557 + MIR3 SINE MIR 34 179 -29 242 95 24 0 chr9 77181249 77181291 -40681336 + (TA)n Simple_repeat Simple_repeat 2 44 0 522 303 67 26 chr9 77181299 77181494 -40681133 - MIR SINE MIR -58 204 2 205 250 73 44 chr9 77182193 77182261 -40680366 + MIR3 SINE MIR 109 178 -30 906 278 47 25 chr9 77182294 77182765 -40679862 + L1MC5 LINE L1 7452 7932 -29 968 172 0 0 chr9 77182782 77182933 -40679694 + FAM SINE Alu 16 166 -19 1965 163 33 3 chr9 77183049 77183380 -40679247 + MER2 DNA MER2_type 1 341 -3 205 179 0 0 chr9 77183638 77183677 -40678950 + A-rich Low_complexity Low_complexity 2 40 0 478 321 84 5 chr9 77184405 77184595 -40678032 - MIR SINE MIR -56 206 2 205 219 0 0 chr9 77185530 77185571 -40677056 + L2 LINE L2 3214 3254 -18 838 164 67 12 chr9 77186277 77186442 -40676185 - AluJb SINE Alu -8 304 131 669 303 91 27 chr9 77186445 77186921 -40675706 - L2 LINE L2 -233 3080 2571 874 293 51 16 chr9 77187080 77187431 -40675196 + LTR16A LTR ERVL 90 457 0 254 167 102 83 chr9 77187838 77187946 -40674681 + LTR50 LTR ERVL 21 130 -665 271 200 0 0 chr9 77188283 77188333 -40674294 - LTR33A LTR ERVL -1 522 473 309 269 97 43 chr9 77188351 77188537 -40674090 + LTR33A LTR ERVL 326 521 -2 295 328 53 53 chr9 77188837 77189026 -40673601 + MIR SINE MIR 74 262 0 1623 169 0 38 chr9 77189053 77189367 -40673260 - AluJo SINE Alu -10 302 1 3710 140 67 2 chr9 77190007 77190620 -40672007 + MER39B LTR ERV1 1 653 0 798 350 66 19 chr9 77191481 77192053 -40670574 - L2 LINE L2 -3 3310 2712 1480 253 48 23 chr9 77192117 77192555 -40670072 + MLT1J2 LTR MaLR 1 449 -1 21 82 0 0 chr9 77192861 77192910 -40669717 + AT_rich Low_complexity Low_complexity 1 49 0 491 264 33 66 chr9 77193178 77193360 -40669267 - MIR SINE MIR -84 178 3 880 130 56 102 chr9 77193502 77193718 -40668909 + MER63A DNA MER1_type 1 206 -4 605 206 121 57 chr9 77193867 77194115 -40668512 + LTR50 LTR ERVL 1 264 -531 * 712 265 64 16 chr9 77194111 77194402 -40668225 + LTR33A LTR ERVL 292 512 -11 502 288 0 8 chr9 77194963 77195095 -40667532 + MIR SINE MIR 18 148 -60 603 299 119 56 chr9 77195111 77195750 -40666877 - L2 LINE L2 -16 3256 2553 1808 143 13 19 chr9 77195750 77196029 -40666598 + AluJo SINE Alu 1 279 -33 180 0 0 0 chr9 77196029 77196049 -40666578 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1808 143 13 19 chr9 77196049 77196083 -40666544 + AluJo SINE Alu 279 312 0 603 299 119 56 chr9 77196083 77196256 -40666371 - L2 LINE L2 -719 2553 2392 775 287 47 53 chr9 77197981 77198319 -40664308 - L2 LINE L2 -20 3252 2917 781 325 65 17 chr9 77198437 77198555 -40664072 + L1ME LINE L1 4699 4810 -1354 2577 187 38 73 chr9 77198555 77199159 -40663468 + MER119 DNA MER1_type 1 583 0 781 325 65 17 chr9 77199159 77199936 -40662691 + L1ME LINE L1 4810 5642 -522 348 43 0 0 chr9 77199990 77200036 -40662591 + (TG)n Simple_repeat Simple_repeat 1 46 0 7548 28 7 21 chr9 77200112 77201552 -40661075 - L1PA3 LINE L1 0 6155 4716 8631 18 0 1 chr9 77201552 77202543 -40660084 + L1PA3 LINE L1 3718 4707 -1439 24 67 0 0 chr9 77202578 77202623 -40660004 + AT_rich Low_complexity Low_complexity 1 45 0 291 54 0 0 chr9 77202705 77202742 -40659885 + (TGAA)n Simple_repeat Simple_repeat 2 38 0 247 222 44 33 chr9 77202947 77203037 -40659590 - L2 LINE L2 0 3313 3223 371 226 36 66 chr9 77203136 77203288 -40659339 - MIR SINE MIR -58 150 19 292 296 71 0 chr9 77203415 77203513 -40659114 + L2 LINE L2 3209 3313 0 1802 144 3 20 chr9 77204209 77204514 -40658113 + AluSx SINE Alu 1 300 -12 1609 222 56 48 chr9 77204638 77205160 -40657467 - L1MEc LINE L1 -5834 562 37 975 258 32 89 chr9 77205172 77205610 -40657017 + L2 LINE L2 2901 3313 0 257 51 26 0 chr9 77205813 77205852 -40656775 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 1079 127 6 0 chr9 77205855 77206012 -40656615 - AluSg/x SINE Alu -32 280 123 2026 118 3 3 chr9 77206047 77206335 -40656292 - AluSx SINE Alu -24 288 1 368 284 88 7 chr9 77206660 77206808 -40655819 + MIR SINE MIR 55 214 -48 210 261 0 0 chr9 77207473 77207519 -40655108 + (CATATA)n Simple_repeat Simple_repeat 5 50 0 3359 75 11 47 chr9 77208039 77208509 -40654118 + MLT2A2 LTR ERVL 1 453 0 1181 179 5 14 chr9 77208560 77208772 -40653855 + MER63A DNA MER1_type 1 210 0 691 309 67 15 chr9 77209580 77209978 -40652649 + L2 LINE L2 2578 3065 -207 784 99 0 15 chr9 77210420 77210551 -40652076 + (TA)n Simple_repeat Simple_repeat 1 129 0 249 322 96 17 chr9 77210626 77210803 -40651824 - MIR SINE MIR -70 192 2 244 330 0 21 chr9 77211419 77211513 -40651114 + (CCCA)n Simple_repeat Simple_repeat 3 94 0 809 236 16 12 chr9 77211544 77212522 -40650105 + (TCCA)n Simple_repeat Simple_repeat 1 981 0 184 330 138 0 chr9 77212618 77212727 -40649900 - L2 LINE L2 -34 3279 3156 218 160 20 0 chr9 77213027 77213077 -40649550 + CT-rich Low_complexity Low_complexity 2 52 0 316 283 10 0 chr9 77213149 77213248 -40649379 + MER113 DNA MER1_type? 1 100 -421 202 286 0 0 chr9 77213761 77213810 -40648817 + (TG)n Simple_repeat Simple_repeat 2 50 0 309 220 165 0 chr9 77213975 77214066 -40648561 - MIR SINE MIR -12 250 145 407 267 116 37 chr9 77214080 77214463 -40648164 + LTR16A LTR ERVL 17 457 0 553 259 38 0 chr9 77214464 77214595 -40648032 - MIR SINE MIR -114 148 13 2094 119 3 0 chr9 77215514 77215808 -40646819 - AluSx SINE Alu -17 295 1 914 169 17 6 chr9 77215808 77215985 -40646642 + L1MB3 LINE L1 6005 6183 0 268 193 0 0 chr9 77216159 77216216 -40646411 + L1ME4a LINE L1 6064 6120 -1 675 248 10 142 chr9 77216552 77216758 -40645869 + MIR SINE MIR 4 161 -101 2376 165 66 9 chr9 77216758 77217200 -40645427 - MLT1C LTR MaLR 0 467 1 675 248 10 142 chr9 77217200 77217288 -40645339 + MIR SINE MIR 161 259 -3 222 360 9 54 chr9 77217702 77217813 -40644814 + MIR SINE MIR 40 145 -63 * 313 269 179 26 chr9 77217799 77217955 -40644672 - L2 LINE L2 0 3272 3093 184 299 186 0 chr9 77218028 77218125 -40644502 + L2 LINE L2 3154 3268 -4 332 313 47 31 chr9 77218135 77218263 -40644364 + MIR SINE MIR 13 142 -120 692 267 212 13 chr9 77218281 77218592 -40644035 - L2 LINE L2 0 3313 2941 226 304 0 0 chr9 77218607 77218676 -40643951 + MIR SINE MIR 194 262 0 183 299 0 0 chr9 77218976 77219043 -40643584 + (CACG)n Simple_repeat Simple_repeat 2 68 0 775 257 87 0 chr9 77219600 77219806 -40642821 - LTR16A1 LTR ERVL 0 457 234 2180 193 15 115 chr9 77220210 77220810 -40641817 + MLT1F LTR MaLR 3 542 0 312 214 174 80 chr9 77221060 77221261 -40641366 - LTR33 LTR ERVL -296 225 6 * 588 267 152 44 chr9 77221252 77221567 -40641060 + MLT1K LTR MaLR 75 423 -165 268 121 190 17 chr9 77221596 77221654 -40640973 + MLT1K LTR MaLR 521 588 0 194 271 9 47 chr9 77221673 77221750 -40640877 - MIR SINE MIR -76 186 115 306 0 0 0 chr9 77221820 77221854 -40640773 + (TG)n Simple_repeat Simple_repeat 2 35 0 1980 123 0 10 chr9 77221854 77222139 -40640488 - AluSx SINE Alu -28 284 1 229 250 87 67 chr9 77222249 77222353 -40640274 - MIR SINE MIR -91 171 66 357 286 87 8 chr9 77222495 77222621 -40640006 + L2 LINE L2 2775 2910 -404 1041 203 79 52 chr9 77222621 77222703 -40639924 - L1MEc LINE L1 -5557 839 761 2295 82 0 16 chr9 77222703 77223009 -40639618 + AluSc SINE Alu 1 301 -8 1041 203 79 52 chr9 77223009 77223231 -40639396 - L1MEc LINE L1 -5635 761 527 1115 88 40 7 chr9 77273234 77273382 -40589245 - AluSx SINE Alu -159 153 1 245 174 214 10 chr9 77273559 77273657 -40588970 + MIR SINE MIR 129 246 -16 282 56 0 0 chr9 77273786 77273822 -40588805 + (TTTTC)n Simple_repeat Simple_repeat 4 39 0 335 316 0 0 chr9 77273950 77274048 -40588579 + L3 LINE CR1 940 1037 -540 188 304 115 54 chr9 77274068 77274216 -40588411 + L3 LINE CR1 1231 1387 -190 403 231 75 25 chr9 77274925 77275084 -40587543 + MIR SINE MIR 38 205 -51 323 267 41 68 chr9 77276114 77276260 -40586367 + MIR SINE MIR 81 222 -40 233 267 151 0 chr9 77276443 77276529 -40586098 + MIR SINE MIR 38 136 -126 212 274 0 0 chr9 77276799 77276850 -40585777 + MIR SINE MIR 156 206 -56 27 62 0 0 chr9 77277066 77277114 -40585513 + AT_rich Low_complexity Low_complexity 1 48 0 975 169 90 73 chr9 77278290 77278571 -40584056 - MER96B DNA MER1_type? -48 369 79 2091 146 33 33 chr9 77278571 77278935 -40583692 + THE1B LTR MaLR 1 364 0 975 169 90 73 chr9 77278935 77278997 -40583630 - MER96B DNA MER1_type? -338 79 20 211 336 9 35 chr9 77279025 77279141 -40583486 - L3 LINE CR1 -414 1163 1051 218 273 15 0 chr9 77279363 77279429 -40583198 - MIR SINE MIR -56 152 86 801 213 57 66 chr9 77279434 77279692 -40582935 + MLT1C LTR MaLR 6 350 -117 1765 181 30 19 chr9 77279692 77280063 -40582564 + THE1C LTR MaLR 1 375 0 801 213 57 66 chr9 77280063 77280180 -40582447 + MLT1C LTR MaLR 350 467 0 218 294 12 0 chr9 77280181 77280266 -40582361 - MIR3 SINE MIR -119 89 4 764 201 23 6 chr9 77280570 77280744 -40581883 + MER96B DNA MER1_type? 241 417 0 1466 216 42 73 chr9 77281971 77282421 -40580206 + MLT1J LTR MaLR 62 497 -14 532 209 86 31 chr9 77282431 77282594 -40580033 + MIR SINE MIR 85 256 -6 469 262 69 14 chr9 77282746 77282891 -40579736 - L1ME3 LINE L1 -82 6080 5928 2176 111 129 23 chr9 77282933 77283320 -40579307 - MSTA LTR MaLR 0 428 1 1257 247 26 129 chr9 77283667 77284028 -40578599 - L1ME3 LINE L1 -1051 5095 4862 8938 82 10 112 chr9 77284028 77285571 -40577056 - SVA Other Other 0 1386 1 1257 247 26 129 chr9 77285571 77285961 -40576666 - L1ME3 LINE L1 -1284 4862 4433 2164 139 0 7 chr9 77285961 77286262 -40576365 + AluSx SINE Alu 1 299 -13 1872 227 18 14 chr9 77286306 77286895 -40575732 - L1ME LINE L1 -476 5755 5160 2477 162 26 12 chr9 77287077 77287497 -40575130 + MSTB LTR MaLR 1 426 0 737 261 72 49 chr9 77287500 77287891 -40574736 - L1ME LINE L1 -1069 5146 4747 648 306 87 30 chr9 77287903 77288737 -40573890 - L1MDa LINE L1 -4451 1764 938 1516 124 121 0 chr9 77288737 77289008 -40573619 - AluSx SINE Alu 0 304 4 648 306 87 30 chr9 77289008 77289100 -40573527 - L1MDa LINE L1 -5277 938 853 318 374 37 26 chr9 77289732 77289922 -40572705 - L1MDa LINE L1 -5859 346 155 541 282 43 64 chr9 77289925 77290251 -40572376 + L3 LINE CR1 1187 1505 -72 333 238 65 83 chr9 77290290 77290402 -40572225 - MER5B DNA MER1_type 0 178 68 2046 135 0 3 chr9 77290402 77290713 -40571914 - AluSx SINE Alu -2 310 1 333 238 65 83 chr9 77290713 77290768 -40571859 - MER5B DNA MER1_type -110 68 14 427 297 65 83 chr9 77292246 77292475 -40570152 + L1ME LINE L1 5357 5581 -540 210 293 0 0 chr9 77292498 77292539 -40570088 - MIR SINE MIR -59 149 109 658 273 94 63 chr9 77292546 77292909 -40569718 - L2 LINE L2 -43 3270 2897 432 189 27 23 chr9 77293381 77293487 -40569140 + L1MC3 LINE L1 7661 7990 -5 198 0 0 0 chr9 77293487 77293509 -40569118 + (T)n Simple_repeat Simple_repeat 1 22 0 256 287 35 43 chr9 77293725 77293840 -40568787 + HAL1b LINE L1 348 461 -887 282 304 86 45 chr9 77294414 77294855 -40567772 + L1M4 LINE L1 2130 2588 -3558 1131 72 7 0 chr9 77295598 77295750 -40566877 - L1MB4 LINE L1 0 6180 6028 1997 84 4 0 chr9 77295774 77296037 -40566590 - AluSx SINE Alu -38 274 11 1139 200 48 5 chr9 77296672 77296882 -40565745 + MER58A DNA MER1_type 6 224 0 729 234 25 6 chr9 77296888 77297046 -40565581 - MIR SINE MIR -98 164 4 1381 219 100 66 chr9 77297616 77298086 -40564541 - MLT1D LTR MaLR 0 505 20 1705 161 0 18 chr9 77298098 77298383 -40564244 - AluJb SINE Alu -32 280 1 199 255 0 21 chr9 77299011 77299058 -40563569 - MIR3 SINE MIR -19 189 144 1044 230 133 24 chr9 77299721 77300104 -40562523 - LTR16A1 LTR ERVL -2 455 31 342 143 0 0 chr9 77300327 77300390 -40562237 + (TG)n Simple_repeat Simple_repeat 2 64 0 242 289 122 74 chr9 77301901 77302237 -40560390 - L2 LINE L2 -2 3270 2919 186 43 0 0 chr9 77302238 77302261 -40560366 + (TGAA)n Simple_repeat Simple_repeat 4 26 0 663 306 157 22 chr9 77302441 77303065 -40559562 - L2 LINE L2 -592 2722 2015 432 305 66 42 chr9 77303092 77303259 -40559368 - MIR SINE MIR -84 178 8 250 268 0 0 chr9 77303263 77303319 -40559308 + L2 LINE L2 3258 3313 0 224 158 0 0 chr9 77303962 77304000 -40558627 + L2 LINE L2 3235 3272 0 741 233 37 21 chr9 77304104 77304293 -40558334 - MIR SINE MIR -19 243 52 301 234 93 19 chr9 77304421 77304528 -40558099 + MIR3 SINE MIR 49 163 -45 603 287 28 0 chr9 77305374 77305555 -40557072 - MIR SINE MIR -55 207 23 385 299 126 76 chr9 77305848 77306283 -40556344 + L3 LINE CR1 726 1182 -395 596 223 65 0 chr9 77306402 77306541 -40556086 + MIR SINE MIR 30 177 -85 185 267 83 0 chr9 77306937 77306997 -40555630 + L2 LINE L2 3202 3266 -6 21 0 0 0 chr9 77307016 77307037 -40555590 + AT_rich Low_complexity Low_complexity 1 21 0 509 245 49 42 chr9 77307875 77308018 -40554609 + MIR SINE MIR 49 192 -70 1800 159 7 0 chr9 77308343 77308638 -40553989 + AluJo SINE Alu 6 302 -10 295 321 45 30 chr9 77308666 77308800 -40553827 - L2 LINE L2 0 3272 3137 204 349 78 0 chr9 77309319 77309448 -40553179 - MIR SINE MIR -58 204 66 2923 161 94 5 chr9 77309918 77310513 -40552114 - L1MC3 LINE L1 -447 7338 6691 403 231 94 31 chr9 77310927 77311087 -40551540 - L2 LINE L2 -7 3306 3137 508 240 103 14 chr9 77311089 77311364 -40551263 + MLT1C LTR MaLR 98 459 -8 223 354 22 22 chr9 77311371 77311549 -40551078 - L2 LINE L2 -169 3144 2967 579 271 47 14 chr9 77311668 77311882 -40550745 + MIR SINE MIR 39 259 -3 230 299 35 23 chr9 77312363 77312450 -40550177 + MIR3 SINE MIR 101 188 -20 214 302 19 38 chr9 77313125 77313231 -40549396 + MIR SINE MIR 19 122 -86 242 330 35 0 chr9 77313803 77313918 -40548709 - MIR3 SINE MIR -38 170 52 843 199 12 0 chr9 77314246 77314412 -40548215 + FRAM SINE Alu 1 168 -8 547 277 29 48 chr9 77314426 77314632 -40547995 - Charlie8 DNA MER1_type -2215 202 1 347 258 34 59 chr9 77314663 77314810 -40547817 + MIR SINE MIR 16 131 -77 4174 161 18 6 chr9 77314815 77315540 -40547087 + L1MB3 LINE L1 5450 6183 0 276 289 26 0 chr9 77316125 77316201 -40546426 + MIR SINE MIR 97 174 -88 317 161 21 2 chr9 77316426 77316487 -40546140 - MIR3 SINE MIR -36 172 118 2215 92 0 3 chr9 77316894 77317186 -40545441 + AluSx SINE Alu 1 291 -21 211 111 28 0 chr9 77317342 77317378 -40545249 + (CA)n Simple_repeat Simple_repeat 2 38 0 995 183 39 0 chr9 77317916 77318096 -40544531 + MER5A DNA MER1_type 1 187 -2 2052 142 0 0 chr9 77318279 77318590 -40544037 - AluSx SINE Alu -1 311 1 275 377 51 7 chr9 77318602 77318740 -40543887 + L3 LINE CR1 998 1141 -436 180 176 0 0 chr9 77320032 77320066 -40542561 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 497 312 67 42 chr9 77320300 77320733 -40541894 - L2 LINE L2 -339 2975 2532 405 192 13 0 chr9 77320750 77320828 -40541799 - MLT1F1 LTR MaLR 0 567 489 890 187 33 22 chr9 77320930 77321112 -40541515 - MLT1F1 LTR MaLR -16 551 368 687 219 51 0 chr9 77321113 77321250 -40541377 + MER5B DNA MER1_type 23 166 -12 319 330 160 19 chr9 77322226 77322432 -40540195 + L3 LINE CR1 1207 1441 -136 342 67 0 0 chr9 77322715 77322760 -40539867 + (TG)n Simple_repeat Simple_repeat 1 45 0 1575 190 93 50 chr9 77322789 77323232 -40539395 + MLT1C LTR MaLR 6 467 0 350 200 154 9 chr9 77323564 77323674 -40538953 + L2 LINE L2 3141 3266 -6 2166 183 75 27 chr9 77324433 77324914 -40537713 + MLT1D LTR MaLR 2 505 0 45501 34 4 1 chr9 77325562 77331705 -40530922 + L1PA3 LINE L1 1 6159 0 3215 36 0 5 chr9 77331707 77332095 -40530532 + L1PA4 LINE L1 5770 6155 0 550 274 93 32 chr9 77332255 77332503 -40530124 + L3 LINE CR1 1304 1566 -11 220 169 17 34 chr9 77332945 77333004 -40529623 + CT-rich Low_complexity Low_complexity 2 59 0 461 315 68 7 chr9 77333061 77333207 -40529420 - MIR SINE MIR -73 189 35 186 370 60 0 chr9 77333329 77333429 -40529198 + L2 LINE L2 3143 3248 -24 436 282 9 0 chr9 77333688 77333798 -40528829 - MIR SINE MIR -61 147 37 373 227 80 60 chr9 77334121 77334271 -40528356 + MER5A DNA MER1_type 35 187 -2 897 275 121 16 chr9 77334373 77334686 -40527941 + LTR16A LTR ERVL 105 450 0 180 0 0 0 chr9 77334974 77334994 -40527633 + (CCCTG)n Simple_repeat Simple_repeat 5 24 0 252 196 39 0 chr9 77335040 77335091 -40527536 + LTR33 LTR ERVL 106 158 -363 296 215 125 49 chr9 77335268 77335412 -40527215 + LTR33 LTR ERVL 135 289 -232 186 341 0 68 chr9 77335704 77335792 -40526835 + L2 LINE L2 2979 3060 -212 423 258 50 8 chr9 77336801 77336921 -40525706 - MIR SINE MIR -102 160 36 913 174 99 52 chr9 77336948 77337161 -40525466 - MER58A DNA MER1_type -1 223 1 387 296 143 23 chr9 77337227 77337443 -40525184 + MIR SINE MIR 20 261 -1 688 316 156 29 chr9 77339259 77339988 -40522639 + HAL1b LINE L1 167 650 -681 490 321 68 38 chr9 77340284 77340577 -40522050 + L1ME1 LINE L1 2916 3217 -2929 349 348 83 48 chr9 77341249 77341646 -40520981 + L1ME1 LINE L1 3317 3727 -2419 932 222 103 60 chr9 77341712 77342014 -40520613 + L2 LINE L2 2267 2581 -733 5204 148 31 14 chr9 77342098 77343420 -40519207 + L1MB7 LINE L1 4822 6168 -16 1426 244 77 36 chr9 77343427 77343989 -40518638 + L2 LINE L2 2733 3313 0 21 57 0 0 chr9 77344314 77344349 -40518278 + AT_rich Low_complexity Low_complexity 1 35 0 227 31 31 0 chr9 77344349 77344381 -40518246 + (TA)n Simple_repeat Simple_repeat 2 34 0 690 231 101 34 chr9 77344405 77344613 -40518014 - MIR SINE MIR -39 223 2 300 280 61 41 chr9 77344652 77344945 -40517682 + L1ME1 LINE L1 4179 4477 -1669 349 196 0 0 chr9 77345202 77345258 -40517369 + Charlie5 DNA MER1_type 1 56 -2556 887 121 0 6 chr9 77345267 77345424 -40517203 + Charlie5 DNA MER1_type 2469 2624 0 766 244 121 23 chr9 77345725 77346028 -40516599 + L1ME1 LINE L1 5460 5801 -320 247 313 174 19 chr9 77346668 77346978 -40515649 + L2 LINE L2 2595 2952 -362 217 245 96 11 chr9 77347367 77347461 -40515166 + MIR SINE MIR 47 148 -114 1672 162 3 24 chr9 77347463 77347760 -40514867 + AluJo SINE Alu 2 292 -20 191 143 0 0 chr9 77347797 77347825 -40514802 + L2 LINE L2 3265 3292 -21 264 276 26 26 chr9 77348882 77348998 -40513629 + MER113 DNA MER1_type? 1 116 -405 494 144 360 0 chr9 77349610 77349749 -40512878 - MER5A DNA MER1_type 0 189 1 207 297 103 32 chr9 77350748 77350903 -40511724 - L2 LINE L2 -386 2928 2763 483 211 0 0 chr9 77351444 77351539 -40511088 - MIR SINE MIR -22 240 146 2873 114 18 7 chr9 77351539 77351987 -40510640 + L1MC/D LINE L1 5346 5798 -535 342 258 0 0 chr9 77351989 77352055 -40510572 - MER2 DNA MER2_type 0 345 280 1984 110 4 11 chr9 77352079 77352360 -40510267 - AluSx SINE Alu -33 279 1 198 0 0 0 chr9 77352379 77352401 -40510226 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 1281 149 5 10 chr9 77352436 77352644 -40509983 - MER2 DNA MER2_type -138 207 1 1796 135 11 4 chr9 77352649 77353108 -40509519 + L1MC1 LINE L1 5804 6314 -19 522 321 0 6 chr9 77353218 77353377 -40509250 - MIR3 SINE MIR -2 206 49 422 256 120 0 chr9 77354016 77354141 -40508486 - MER5B DNA MER1_type -5 173 34 1352 188 107 42 chr9 77354145 77354418 -40508209 + L1ME1 LINE L1 5782 6085 -81 1596 154 68 18 chr9 77354418 77354698 -40507929 - AluJo SINE Alu -18 294 1 1352 188 107 42 chr9 77354698 77354780 -40507847 + L1ME1 LINE L1 6085 6160 -6 248 209 0 0 chr9 77354850 77354893 -40507734 - MER5B DNA MER1_type -130 48 6 216 185 109 54 chr9 77354922 77355014 -40507613 + L2 LINE L2 3173 3269 -3 231 328 157 29 chr9 77355063 77355267 -40507360 - MIR SINE MIR -13 249 20 198 311 33 11 chr9 77355387 77355477 -40507150 - MIR SINE MIR -87 121 30 340 329 120 58 chr9 77355843 77355921 -40506706 - L2 LINE L2 -471 2843 2771 3893 39 7 0 chr9 77355921 77356383 -40506244 + L1PA7 LINE L1 5682 6146 -8 340 329 120 58 chr9 77356383 77356754 -40505873 - L2 LINE L2 -543 2771 2366 225 135 0 96 chr9 77357143 77357195 -40505432 + L1PBb LINE L1 237 283 -5921 1135 229 119 81 chr9 77357334 77357780 -40504847 + Charlie8 DNA MER1_type 1 463 -1954 1735 185 27 21 chr9 77358042 77358415 -40504212 + THE1C LTR MaLR 1 375 0 302 332 101 57 chr9 77358418 77358600 -40504027 - MIR SINE MIR -7 255 45 539 218 77 41 chr9 77358610 77358780 -40503847 - MER5B DNA MER1_type -2 176 1 345 24 0 0 chr9 77358783 77358825 -40503802 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 240 206 0 44 chr9 77359788 77359856 -40502771 - MER58 DNA MER1_type 0 2420 2356 2070 100 4 0 chr9 77359960 77360239 -40502388 - AluSx SINE Alu -32 280 1 320 255 205 23 chr9 77360357 77360620 -40502007 - L1ME4a LINE L1 -105 6016 5706 583 278 60 54 chr9 77360625 77360947 -40501680 - L1ME4a LINE L1 -461 5660 5348 2407 166 63 21 chr9 77360966 77361328 -40501299 - MLT1D LTR MaLR -4 501 113 1977 128 3 10 chr9 77361328 77361626 -40501001 - AluSx SINE Alu -16 296 1 2407 166 63 21 chr9 77361626 77361740 -40500887 - MLT1D LTR MaLR -392 113 5 2142 99 0 0 chr9 77361837 77362119 -40500508 - AluSx SINE Alu -30 282 1 844 238 140 98 chr9 77362150 77362558 -40500069 + LTR16A LTR ERVL 20 444 -6 1261 305 38 11 chr9 77362740 77363186 -40499441 + ERVL LTR ERVL 223 680 -4316 778 286 88 25 chr9 77363290 77363654 -40498973 + ERVL LTR ERVL 820 1206 -3790 198 0 0 0 chr9 77363669 77363691 -40498936 + (GGGTG)n Simple_repeat Simple_repeat 5 26 0 3601 293 49 33 chr9 77363705 77365235 -40497392 + ERVL LTR ERVL 1391 2891 -2105 855 113 0 8 chr9 77365263 77365387 -40497240 + FLAM_C SINE Alu 1 123 -20 1357 218 3 19 chr9 77365404 77365682 -40496945 + AluJb SINE Alu 1 275 -37 294 50 0 0 chr9 77365682 77365722 -40496905 + (TC)n Simple_repeat Simple_repeat 1 40 0 1357 218 3 19 chr9 77365722 77365750 -40496877 + AluJb SINE Alu 275 302 -10 1204 290 60 4 chr9 77365752 77366149 -40496478 + ERVL LTR ERVL 2921 3377 -1902 1318 315 32 40 chr9 77366421 77367053 -40495574 + ERVL LTR ERVL 4269 4895 -869 693 229 143 0 chr9 77367062 77367175 -40495452 + MER3 DNA MER1_type 10 105 -104 636 194 73 0 chr9 77367175 77367299 -40495328 - FLAM_A SINE Alu 0 133 1 693 229 143 0 chr9 77367299 77367360 -40495267 + MER3 DNA MER1_type 105 209 0 256 260 0 0 chr9 77367317 77367367 -40495260 - MER3 DNA MER1_type -119 90 41 * 443 325 60 60 chr9 77367379 77367797 -40494830 + ERVL LTR ERVL 4906 5323 -441 1092 255 95 54 chr9 77367997 77368408 -40494219 + LTR16A LTR ERVL 23 445 -5 976 258 90 46 chr9 77368443 77368879 -40493748 + LTR16A LTR ERVL 1 450 0 4586 155 28 31 chr9 77369121 77369511 -40493116 - L1MB3 LINE L1 -2 6181 5792 315 0 0 0 chr9 77369511 77369546 -40493081 + (TG)n Simple_repeat Simple_repeat 2 36 0 4586 155 28 31 chr9 77369546 77370034 -40492593 - L1MB3 LINE L1 -391 5792 5305 365 396 35 5 chr9 77370047 77370244 -40492383 - L1M4 LINE L1 -1200 4946 4744 272 278 0 0 chr9 77370502 77370556 -40492071 - L2 LINE L2 -258 3055 3002 666 131 44 7 chr9 77370770 77370907 -40491720 - L1MB8 LINE L1 -6 6172 6031 3995 167 27 9 chr9 77370907 77371649 -40490978 + L1MB3 LINE L1 5428 6183 0 3239 157 37 29 chr9 77371738 77372361 -40490266 - L1MB7 LINE L1 -147 6037 5410 301 311 209 18 chr9 77372365 77372642 -40489985 - L2 LINE L2 -569 2745 2416 2183 141 14 3 chr9 77372669 77373024 -40489603 - L1MB2 LINE L1 -2 6169 5811 792 328 37 29 chr9 77373180 77373561 -40489066 - HsTC2 DNA Tc2 -1029 869 486 309 203 0 47 chr9 77373775 77373839 -40488788 - HsTC2 DNA Tc2 -1827 71 11 940 185 0 0 chr9 77376230 77376392 -40486235 - FRAM SINE Alu -14 162 1 322 333 35 0 chr9 77376625 77376739 -40485888 + MIR SINE MIR 67 184 -78 213 319 0 0 chr9 77378231 77378303 -40484324 - MIR SINE MIR -111 151 80 349 327 139 36 chr9 77378435 77378744 -40483883 + L2 LINE L2 2932 3272 0 425 284 116 18 chr9 77380104 77380329 -40482298 + MIR SINE MIR 5 251 -11 278 254 15 15 chr9 77381197 77381264 -40481363 - MIR3 SINE MIR -41 167 101 600 266 131 25 chr9 77381580 77381855 -40480772 + MLT1J2 LTR MaLR 64 367 -83 6102 154 4 23 chr9 77383017 77385031 -40477596 + L1PB1 LINE L1 4176 6150 -1 249 33 0 0 chr9 77385036 77385066 -40477561 + (CAA)n Simple_repeat Simple_repeat 2 31 0 699 135 18 0 chr9 77385079 77385190 -40477437 + FLAM_A SINE Alu 1 113 -29 592 264 28 14 chr9 77385190 77385334 -40477293 + MIR SINE MIR 43 188 -74 22 0 0 0 chr9 77385409 77385431 -40477196 + AT_rich Low_complexity Low_complexity 1 22 0 2182 30 19 4 chr9 77385511 77385779 -40476848 - AluY SINE Alu -14 297 26 24 0 0 0 chr9 77385782 77385806 -40476821 + AT_rich Low_complexity Low_complexity 1 24 0 205 316 167 9 chr9 77386113 77386227 -40476400 + MIR SINE MIR 20 151 -57 535 245 120 86 chr9 77386493 77386947 -40475680 + L1ME LINE L1 5311 5657 -464 731 189 0 15 chr9 77387063 77387195 -40475432 + FLAM_A SINE Alu 4 133 0 391 287 176 11 chr9 77387654 77387842 -40474785 + MER112 DNA MER1_type 36 254 -6 1099 248 145 75 chr9 77388764 77389301 -40473326 - MLT1K LTR MaLR 0 588 14 2297 64 0 7 chr9 77390232 77390527 -40472100 - AluY SINE Alu -18 293 1 1342 229 47 12 chr9 77390911 77391252 -40471375 - MER63C DNA MER1_type -32 898 546 745 115 0 10 chr9 77391253 77391357 -40471270 - AluJb SINE Alu -17 295 193 2542 165 92 12 chr9 77391358 77391868 -40470759 - MER63C DNA MER1_type -379 551 1 715 212 38 33 chr9 77392111 77392295 -40470332 + MIR SINE MIR 23 207 -55 326 78 0 20 chr9 77392425 77392476 -40470151 + (GGAA)n Simple_repeat Simple_repeat 1 50 0 459 246 103 51 chr9 77392514 77392689 -40469938 + L2 LINE L2 2886 3069 -244 261 0 0 0 chr9 77392767 77392796 -40469831 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 1316 192 3 45 chr9 77392796 77393088 -40469539 - AluJo SINE Alu -32 280 1 3308 139 28 32 chr9 77394288 77394890 -40467737 + L1MB7 LINE L1 5576 6175 -9 1251 246 132 26 chr9 77396105 77396531 -40466096 - MLT1J LTR MaLR -37 474 4 228 195 0 161 chr9 77396699 77396786 -40465841 - L2 LINE L2 0 3272 3200 204 243 201 21 chr9 77397782 77397926 -40464701 - MIR SINE MIR -62 200 31 604 279 44 35 chr9 77398193 77398419 -40464208 + MIR SINE MIR 5 232 -30 280 279 73 15 chr9 77399421 77399557 -40463070 - L3 LINE CR1 -129 1448 1305 465 262 48 8 chr9 77399592 77399718 -40462909 + MIR SINE MIR 26 156 -106 322 347 50 30 chr9 77400113 77400312 -40462315 - L1ME LINE L1 -394 5727 5525 213 263 35 0 chr9 77400775 77400832 -40461795 - MIR SINE MIR -58 150 92 495 262 94 34 chr9 77401086 77401235 -40461392 - MIR SINE MIR -26 236 79 545 316 27 13 chr9 77401600 77401834 -40460793 + MIR SINE MIR 10 249 -13 330 98 0 0 chr9 77401912 77401963 -40460664 + (TG)n Simple_repeat Simple_repeat 1 51 0 1715 148 10 17 chr9 77402384 77402674 -40459953 + AluJo SINE Alu 1 288 -24 383 232 58 29 chr9 77402693 77402831 -40459796 - MER5B DNA MER1_type -36 142 1 365 244 103 9 chr9 77403154 77403283 -40459344 + MIR SINE MIR 10 146 -62 1014 193 168 30 chr9 77403575 77403938 -40458689 - L1MC5 LINE L1 -44 7917 7505 1477 172 43 32 chr9 77403950 77404229 -40458398 + AluJo SINE Alu 1 282 -30 2043 91 70 0 chr9 77404256 77404542 -40458085 + AluSx SINE Alu 1 306 -6 234 62 0 0 chr9 77404545 77404577 -40458050 + (TG)n Simple_repeat Simple_repeat 2 33 0 2504 156 50 17 chr9 77404578 77405060 -40457567 - L1MB3 LINE L1 -6 6177 5680 290 136 38 159 chr9 77405062 77405194 -40457433 - L1MC5 LINE L1 -442 7519 7404 786 254 67 23 chr9 77405244 77405468 -40457159 - MIR SINE MIR -11 197 13 199 304 36 0 chr9 77406290 77406346 -40456281 + MIR3 SINE MIR 144 201 -7 290 274 22 117 chr9 77406856 77407035 -40455592 - MER5B DNA MER1_type -16 162 1 251 226 151 11 chr9 77407035 77407128 -40455499 - MIR3 SINE MIR -48 160 55 2093 84 0 4 chr9 77407249 77407524 -40455103 + AluSx SINE Alu 1 274 -38 336 24 0 0 chr9 77407524 77407565 -40455062 + (TCTA)n Simple_repeat Simple_repeat 4 44 0 324 0 0 0 chr9 77407565 77407601 -40455026 + (CA)n Simple_repeat Simple_repeat 2 37 0 325 310 26 12 chr9 77408163 77408300 -40454327 - MIR SINE MIR -68 140 4 189 143 0 57 chr9 77408723 77408758 -40453869 + MIR SINE MIR 30 62 -146 3407 164 13 4 chr9 77409101 77409651 -40452976 - MER68 LTR ERV1 -7 555 1 1101 241 55 0 chr9 77409656 77409893 -40452734 + MIR SINE MIR 3 252 -10 2897 159 14 29 chr9 77410458 77410844 -40451783 - MER70B LTR ERVL -102 476 97 1893 147 33 0 chr9 77410844 77411144 -40451483 - AluSx SINE Alu -2 310 1 2897 159 14 29 chr9 77411144 77411240 -40451387 - MER70B LTR ERVL -481 97 1 782 311 93 9 chr9 77411657 77412098 -40450529 - MLT1K LTR MaLR -21 567 25 590 278 116 0 chr9 77412539 77412712 -40449915 + LTR16C LTR ERVL 299 491 0 485 271 125 46 chr9 77412869 77413109 -40449518 + MER112 DNA MER1_type 2 260 0 210 325 195 16 chr9 77413855 77413978 -40448649 - L2 LINE L2 -5 3267 3123 2212 87 0 26 chr9 77414263 77414575 -40448052 + AluSx SINE Alu 1 304 -8 348 226 0 164 chr9 77414583 77414729 -40447898 + MER5A DNA MER1_type 68 189 0 265 330 34 0 chr9 77414731 77414819 -40447808 - MIR SINE MIR -97 165 75 182 344 16 0 chr9 77415212 77415276 -40447351 - L2 LINE L2 -208 3064 3000 243 277 149 11 chr9 77415423 77415517 -40447110 - L2 LINE L2 -4 3309 3203 297 0 0 0 chr9 77415558 77415591 -40447036 + (TA)n Simple_repeat Simple_repeat 2 34 0 4920 76 30 0 chr9 77416621 77417262 -40445365 - PABL_A LTR ERV1 0 660 1 367 312 39 7 chr9 77417277 77417431 -40445196 + MIR3 SINE MIR 49 207 -1 660 223 71 92 chr9 77417605 77417814 -40444813 + MIR SINE MIR 28 233 -29 1962 191 54 48 chr9 77417814 77418316 -40444311 - MLT1D LTR MaLR 0 505 1 660 223 71 92 chr9 77418316 77418344 -40444283 + MIR SINE MIR 233 260 -2 486 289 66 15 chr9 77418515 77418712 -40443915 + L3 LINE CR1 1268 1474 -103 191 373 15 0 chr9 77418745 77418812 -40443815 + MER5A DNA MER1_type 71 138 -51 1898 125 4 4 chr9 77418952 77419233 -40443394 + AluSx SINE Alu 32 312 0 266 221 35 47 chr9 77419766 77419852 -40442775 + MER5A DNA MER1_type 103 187 -2 309 237 268 40 chr9 77420631 77420859 -40441768 + L3 LINE CR1 1188 1467 -110 1696 196 89 33 chr9 77420973 77421417 -40441210 - MLT1C LTR MaLR -5 459 1 651 348 41 12 chr9 77421685 77422024 -40440603 + LTR16B LTR ERVL 1 349 -115 2168 96 3 13 chr9 77422060 77422374 -40440253 - AluSq SINE Alu -2 311 1 626 213 89 55 chr9 77422525 77422727 -40439900 - MER63A DNA MER1_type 0 210 2 219 303 15 0 chr9 77422773 77422839 -40439788 + L2 LINE L2 3205 3271 -1 1036 214 144 21 chr9 77422849 77423323 -40439304 - MLT1G LTR MaLR 0 590 1 746 168 129 13 chr9 77423343 77423498 -40439129 - MIR SINE MIR -12 250 78 525 206 0 71 chr9 77424188 77424314 -40438313 + L2 LINE L2 3193 3309 -4 499 293 54 12 chr9 77424317 77424484 -40438143 - MIR SINE MIR -66 196 23 1005 189 0 37 chr9 77424672 77424889 -40437738 + MER3 DNA MER1_type 1 209 0 277 220 119 0 chr9 77425382 77425441 -40437186 - MIR SINE MIR -92 170 105 296 286 41 0 chr9 77425552 77425650 -40436977 - MLT1L LTR MaLR -11 604 503 692 174 179 30 chr9 77425696 77425897 -40436730 - ORSL DNA AcHobo -43 232 2 496 258 16 8 chr9 77427807 77427931 -40434696 + MIR3 SINE MIR 60 184 -24 188 163 163 0 chr9 77427897 77427940 -40434687 + L3b LINE CR1 1530 1579 -4 * 256 307 26 46 chr9 77428015 77428168 -40434459 - L3 LINE CR1 -60 1517 1368 615 228 109 27 chr9 77429006 77429231 -40433396 - MIR SINE MIR 0 262 22 1827 152 3 27 chr9 77429283 77429613 -40433014 - L1MB8 LINE L1 -5 6173 5852 409 260 77 24 chr9 77429753 77429922 -40432705 + MIR SINE MIR 15 192 -70 302 250 28 0 chr9 77430810 77430882 -40431745 - MIR SINE MIR -72 136 63 463 264 32 0 chr9 77431676 77431801 -40430826 + MIR SINE MIR 21 149 -113 2055 169 47 42 chr9 77431808 77432259 -40430368 + MLT1D LTR MaLR 1 453 -52 1910 138 0 13 chr9 77432268 77432572 -40430055 - AluJb SINE Alu -12 300 1 1605 154 86 4 chr9 77432596 77432875 -40429752 - L1MC1 LINE L1 -18 6315 6014 338 188 16 0 chr9 77432879 77432943 -40429684 + MLT1D LTR MaLR 441 505 0 498 236 29 29 chr9 77432972 77433112 -40429515 - L2 LINE L2 -467 2847 2708 194 324 88 20 chr9 77433118 77433220 -40429407 + L2 LINE L2 3153 3261 -11 1622 161 0 4 chr9 77433281 77433548 -40429079 + AluJb SINE Alu 33 298 -14 249 33 0 0 chr9 77433552 77433582 -40429045 + (TAAAA)n Simple_repeat Simple_repeat 3 32 0 301 261 54 11 chr9 77434437 77434529 -40428098 + MIR SINE MIR 55 150 -112 475 297 109 30 chr9 77434712 77434914 -40427713 - MIR SINE MIR -17 245 28 335 259 89 42 chr9 77435173 77435432 -40427195 + L1MC4 LINE L1 7623 7893 -149 339 25 0 0 chr9 77435445 77435485 -40427142 + (GA)n Simple_repeat Simple_repeat 1 40 0 596 315 44 0 chr9 77435613 77435816 -40426811 - MIR SINE MIR -6 256 45 230 239 0 0 chr9 77436251 77436297 -40426330 - L3b LINE CR1 -1 1582 1537 215 242 231 22 chr9 77436786 77436877 -40425750 - MIR3 SINE MIR -50 158 49 259 168 0 56 chr9 77437068 77437175 -40425452 + (CAGAGA)n Simple_repeat Simple_repeat 6 106 0 235 125 36 54 chr9 77437185 77437241 -40425386 - LTR13 LTR ERVK -292 715 661 589 263 68 42 chr9 77437627 77437863 -40424764 - MIR SINE MIR 0 262 21 2137 113 7 0 chr9 77438930 77439232 -40423395 - AluSx SINE Alu -8 304 1 345 263 12 0 chr9 77439575 77439655 -40422972 + MIR SINE MIR 73 153 -109 * 659 262 110 14 chr9 77439653 77439865 -40422762 - MIR SINE MIR -13 249 25 180 276 203 32 chr9 77440879 77441125 -40421502 - L2 LINE L2 -52 3220 2933 315 265 169 48 chr9 77441508 77441534 -40421093 - L1MDa LINE L1 -3934 2606 2585 2167 119 0 3 chr9 77441534 77441829 -40420798 - AluSq SINE Alu -19 294 1 315 265 169 48 chr9 77441829 77441968 -40420659 - L1MDa LINE L1 -3955 2585 2421 234 319 42 42 chr9 77442200 77442416 -40420211 - HAL1 LINE L1 -738 1769 1554 772 184 22 118 chr9 77442498 77442610 -40420017 - MLT1H LTR MaLR -343 206 126 1736 189 0 3 chr9 77442610 77442901 -40419726 - AluJo SINE Alu -8 304 15 772 184 22 118 chr9 77442901 77443016 -40419611 - MLT1H LTR MaLR -423 126 1 432 330 72 55 chr9 77443626 77444150 -40418477 - L3 LINE CR1 -59 1518 986 351 0 0 0 chr9 77444575 77444614 -40418013 + (TTCA)n Simple_repeat Simple_repeat 2 40 0 955 153 7 0 chr9 77445052 77445202 -40417425 - AluSg/x SINE Alu -1 309 159 1014 229 100 83 chr9 77445213 77445678 -40416949 - MLT1D LTR MaLR 0 505 8 601 281 81 11 chr9 77445721 77445906 -40416721 - MIR SINE MIR -21 241 44 191 264 151 0 chr9 77445957 77446063 -40416564 - L2 LINE L2 -884 2430 2309 2420 97 7 0 chr9 77449292 77449600 -40413027 + AluSp SINE Alu 1 310 -3 447 269 48 48 chr9 77449601 77449684 -40412943 - MIR SINE MIR -1 261 179 5109 41 7 0 chr9 77449684 77450290 -40412337 + L1PA5 LINE L1 5540 6149 -5 447 269 48 48 chr9 77450290 77450392 -40412235 - MIR SINE MIR -82 180 76 232 369 48 0 chr9 77451054 77451157 -40411470 + L2 LINE L2 3164 3271 -1 * 417 287 7 44 chr9 77451147 77451283 -40411344 + MIR3 SINE MIR 15 145 -63 532 273 118 0 chr9 77451846 77452007 -40410620 - MER5A DNA MER1_type -7 182 3 339 171 43 29 chr9 77453093 77453163 -40409464 - MIR SINE MIR -57 151 81 1862 149 16 41 chr9 77453482 77453598 -40409029 + AluJb SINE Alu 1 118 -194 2226 88 42 0 chr9 77453598 77453882 -40408745 - AluSg SINE Alu -14 296 1 1862 149 16 41 chr9 77453882 77454080 -40408547 + AluJb SINE Alu 118 307 -5 1820 189 0 0 chr9 77454510 77454839 -40407788 - AluJo SINE Alu 0 329 1 205 284 30 15 chr9 77455023 77455090 -40407537 - L2 LINE L2 -211 3061 2994 192 349 134 16 chr9 77455113 77455420 -40407207 - L2 LINE L2 -563 2751 2409 196 257 110 18 chr9 77455655 77455764 -40406863 - L2 LINE L2 -1021 2293 2175 247 253 0 27 chr9 77455981 77456056 -40406571 - L1MC5 LINE L1 -53 7908 7836 180 169 24 121 chr9 77457769 77457852 -40404775 + L2 LINE L2 2337 2411 -903 2195 121 0 10 chr9 77457951 77458265 -40404362 + AluSx SINE Alu 1 311 -1 374 283 153 28 chr9 77458489 77458666 -40403961 + MIR SINE MIR 40 238 -24 601 291 109 0 chr9 77459759 77459989 -40402638 - MIR SINE MIR -3 259 5 211 248 165 18 chr9 77460177 77460286 -40402341 + MIR3 SINE MIR 9 133 -75 323 289 39 119 chr9 77460519 77460670 -40401957 + L2 LINE L2 2987 3102 -170 2058 179 8 16 chr9 77460670 77461038 -40401589 + MLT1A1 LTR MaLR 1 365 0 323 289 39 119 chr9 77461038 77461197 -40401430 + L2 LINE L2 3102 3272 0 186 43 0 0 chr9 77461568 77461591 -40401036 + (TCCCC)n Simple_repeat Simple_repeat 2 24 0 736 114 0 18 chr9 77462799 77462913 -40399714 + L1MB4 LINE L1 6014 6125 -55 989 196 0 10 chr9 77462913 77463107 -40399520 + AluJb SINE Alu 121 312 0 710 312 0 59 chr9 77463471 77463724 -40398903 + MIR SINE MIR 19 256 -6 201 217 22 0 chr9 77463765 77463811 -40398816 - MIR3 SINE MIR -5 203 157 542 314 67 79 chr9 77464725 77465155 -40397472 + L2 LINE L2 2848 3272 0 1817 155 3 47 chr9 77466045 77466362 -40396265 + AluJo SINE Alu 1 303 -9 445 320 92 18 chr9 77466757 77467029 -40395598 - LTR16B LTR ERVL -66 398 107 583 272 41 24 chr9 77467215 77467384 -40395243 - MLT1J2 LTR MaLR -247 203 32 1170 172 16 52 chr9 77467390 77467640 -40394987 + MIR SINE MIR 22 262 0 260 237 26 13 chr9 77467858 77467934 -40394693 + L3 LINE CR1 803 879 -698 1093 231 146 20 chr9 77468032 77468483 -40394144 - HAL1b LINE L1 -56 1292 785 428 161 25 59 chr9 77468494 77468612 -40394015 - HAL1b LINE L1 -632 716 603 283 336 104 8 chr9 77468669 77468803 -40393824 + L3 LINE CR1 906 1052 -525 1325 267 135 19 chr9 77468827 77469418 -40393209 + L1ME3A LINE L1 5292 5951 -219 206 217 0 0 chr9 77469457 77469479 -40393148 + A-rich Low_complexity Low_complexity 3 24 -24 2139 149 0 7 chr9 77469479 77469788 -40392839 + AluSx SINE Alu 6 312 0 206 217 0 0 chr9 77469788 77469811 -40392816 + A-rich Low_complexity Low_complexity 23 48 0 426 257 50 0 chr9 77470035 77470100 -40392527 + MIR SINE MIR 86 146 -116 1410 183 0 0 chr9 77470100 77470335 -40392292 - MER46A DNA MER2_type 0 236 2 426 257 50 0 chr9 77470335 77470409 -40392218 + MIR SINE MIR 146 232 -30 3859 27 0 2 chr9 77470422 77470871 -40391756 - L1PA4 LINE L1 -3 6152 5705 506 301 33 28 chr9 77471104 77471317 -40391310 + L3 LINE CR1 1354 1567 -10 225 129 0 0 chr9 77471728 77471759 -40390868 - MIR SINE MIR -9 253 223 326 252 215 0 chr9 77473096 77473203 -40389424 + MIR3 SINE MIR 31 160 -48 1299 205 144 47 chr9 77473473 77473985 -40388642 - MLT1E3 LTR MaLR 0 624 44 354 183 0 0 chr9 77474535 77474606 -40388021 + CT-rich Low_complexity Low_complexity 4 74 0 32 26 0 0 chr9 77474639 77474678 -40387949 + AT_rich Low_complexity Low_complexity 1 39 0 210 295 9 29 chr9 77475142 77475247 -40387380 + GA-rich Low_complexity Low_complexity 5 107 0 2159 109 17 0 chr9 77475274 77475568 -40387059 - AluSx SINE Alu -13 299 1 831 307 131 26 chr9 77475569 77475996 -40386631 - L2 LINE L2 -11 3302 2831 1038 255 111 49 chr9 77476049 77476481 -40386146 + LTR37B LTR ERV1 10 468 0 182 339 28 33 chr9 77476507 77476687 -40385940 - L2 LINE L2 -580 2734 2556 278 313 101 0 chr9 77476796 77476895 -40385732 + L2 LINE L2 3160 3268 -4 4186 166 7 12 chr9 77476923 77477664 -40384963 - L1MB3 LINE L1 0 6183 5447 1185 106 0 0 chr9 77478857 77479037 -40383590 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 483 290 12 35 chr9 77479037 77479206 -40383421 - L2 LINE L2 -1 3312 3148 * 954 242 22 22 chr9 77479195 77479422 -40383205 - MIR SINE MIR 0 262 36 534 255 52 80 chr9 77479424 77479750 -40382877 - L2 LINE L2 -193 3120 2804 286 305 37 77 chr9 77479869 77480167 -40382460 - L2 LINE L2 -164 3108 2823 250 261 0 14 chr9 77480276 77480345 -40382282 + MIR SINE MIR 81 148 -60 519 248 58 0 chr9 77480376 77480513 -40382114 + MIR SINE MIR 108 252 -10 296 349 43 34 chr9 77480525 77480734 -40381893 + L2 LINE L2 2852 3062 -210 238 323 0 0 chr9 77480881 77480943 -40381684 + L2 LINE L2 3134 3195 -77 1244 245 150 23 chr9 77481292 77481773 -40380854 - MLT1F LTR MaLR 0 542 1 232 254 63 0 chr9 77481855 77481918 -40380709 + L2 LINE L2 2992 3058 -214 662 227 32 12 chr9 77481996 77482228 -40380399 + MER106B DNA MER1_type 3 1059 0 382 149 35 0 chr9 77482266 77482353 -40380274 + L1MB3 LINE L1 6094 6183 0 1809 183 0 3 chr9 77482370 77482671 -40379956 + AluJo SINE Alu 1 300 -12 222 389 14 36 chr9 77482683 77482822 -40379805 + L2 LINE L2 3121 3256 -16 223 321 134 39 chr9 77483787 77484198 -40378429 + L3 LINE CR1 994 1443 -134 186 288 188 31 chr9 77484769 77484998 -40377629 + L2 LINE L2 2998 3262 -10 300 305 34 8 chr9 77486153 77486271 -40376356 - MIR3 SINE MIR -6 202 82 205 290 90 0 chr9 77486301 77486401 -40376226 + MIR SINE MIR 65 173 -89 272 189 14 0 chr9 77487922 77487996 -40374631 + (TTCA)n Simple_repeat Simple_repeat 1 75 0 207 321 8 45 chr9 77488087 77488285 -40374342 + MIR SINE MIR 2 192 -70 193 302 167 0 chr9 77488987 77489083 -40373544 + MIR SINE MIR 134 245 -17 276 222 0 0 chr9 77489084 77489156 -40373471 + T-rich Low_complexity Low_complexity 1 72 0 617 147 0 11 chr9 77489166 77489261 -40373366 - AluJb SINE Alu -88 224 131 2317 108 0 0 chr9 77489264 77489561 -40373066 - AluY SINE Alu -14 297 1 288 207 35 0 chr9 77489656 77489714 -40372913 - MER5A DNA MER1_type 0 189 130 260 307 96 54 chr9 77489658 77489727 -40372900 + MER5A DNA MER1_type 17 82 -107 * 526 220 37 0 chr9 77489727 77489836 -40372791 + MER81 DNA DNA 1 113 -1 260 307 96 54 chr9 77489836 77489932 -40372695 + MER5A DNA MER1_type 82 189 0 284 250 58 10 chr9 77490132 77490236 -40372391 + MIR SINE MIR 27 135 -127 228 210 48 0 chr9 77490779 77490841 -40371786 - MIR SINE MIR -78 130 66 259 275 29 51 chr9 77490928 77491066 -40371561 + L2 LINE L2 2930 3064 -208 765 223 38 0 chr9 77491302 77491459 -40371168 - MIR SINE MIR -11 251 89 211 194 0 0 chr9 77491846 77491882 -40370745 + (CA)n Simple_repeat Simple_repeat 1 36 0 2122 118 3 0 chr9 77492862 77493166 -40369461 - AluJb SINE Alu -6 306 2 2205 225 97 44 chr9 77493218 77494050 -40368577 - L1MC4 LINE L1 0 8042 7158 1834 161 0 7 chr9 77494050 77494355 -40368272 - AluJo SINE Alu -9 303 1 2205 225 97 44 chr9 77494355 77494423 -40368204 - L1MC4 LINE L1 -884 7158 7095 249 175 0 0 chr9 77494489 77494529 -40368098 - L1MC4 LINE L1 -1178 6864 6825 * 671 218 9 36 chr9 77494521 77494684 -40367943 - L1MC4a LINE L1 -984 6801 6614 708 251 87 52 chr9 77494699 77495126 -40367501 + L1MC4 LINE L1 7471 7912 -130 231 146 0 0 chr9 77495133 77495174 -40367453 + (TA)n Simple_repeat Simple_repeat 1 41 0 335 271 213 14 chr9 77495192 77495413 -40367214 + L1MD3 LINE L1 7721 7985 -10 842 122 7 0 chr9 77495424 77495563 -40367064 + (TG)n Simple_repeat Simple_repeat 1 140 0 1326 201 121 40 chr9 77495848 77495945 -40366682 - L1MC4a LINE L1 -1759 6049 5961 276 53 0 0 chr9 77495945 77495983 -40366644 + (TG)n Simple_repeat Simple_repeat 2 39 0 1326 201 121 40 chr9 77495983 77496314 -40366313 - L1MC4a LINE L1 -1847 5961 5586 1958 134 0 0 chr9 77496537 77496828 -40365799 + AluSx SINE Alu 13 303 -9 248 279 209 0 chr9 77496846 77496932 -40365695 - MIR3 SINE MIR -1 207 104 204 246 153 8 chr9 77497359 77497477 -40365150 + MIR3 SINE MIR 24 158 -50 390 188 9 98 chr9 77497661 77497773 -40364854 + MER53 DNA DNA 2 103 -86 672 303 54 8 chr9 77498311 77498552 -40364075 - L3 LINE CR1 -46 1531 1280 212 186 70 0 chr9 77498554 77498597 -40364030 - L2 LINE L2 0 3313 3268 1609 163 17 10 chr9 77498902 77499191 -40363436 - AluJb SINE Alu -21 291 1 276 130 22 0 chr9 77499237 77499283 -40363344 - MIR SINE MIR -110 152 106 194 274 176 10 chr9 77499390 77499492 -40363135 - L3 LINE CR1 -240 1337 1219 199 222 48 16 chr9 77500084 77500147 -40362480 - L2 LINE L2 -213 3059 2995 204 310 95 0 chr9 77500578 77500700 -40361927 + MIR SINE MIR 18 145 -63 263 318 45 40 chr9 77500880 77501066 -40361561 - MIR3 SINE MIR -53 155 2 23 54 0 0 chr9 77501527 77501564 -40361063 + AT_rich Low_complexity Low_complexity 1 37 0 1025 142 28 0 chr9 77501566 77501742 -40360885 - FRAM SINE Alu 0 176 1 464 226 7 142 chr9 77501852 77502007 -40360620 + MIR SINE MIR 55 188 -74 734 250 55 0 chr9 77502072 77502291 -40360336 + MIR SINE MIR 17 246 -16 355 243 0 103 chr9 77502305 77502344 -40360283 + MIR SINE MIR 36 77 -131 1782 142 17 7 chr9 77502344 77502640 -40359987 - AluJb SINE Alu -13 299 1 355 243 0 103 chr9 77502640 77502707 -40359920 + MIR SINE MIR 77 131 -77 1806 145 3 26 chr9 77502769 77503080 -40359547 + AluJo SINE Alu 2 305 -7 353 335 25 25 chr9 77504020 77504181 -40358446 - MIR3 SINE MIR -8 200 40 221 236 91 0 chr9 77504441 77504496 -40358131 + MIR SINE MIR 105 164 -98 1921 142 0 19 chr9 77504515 77504831 -40357796 - AluSx SINE Alu -2 310 1 211 333 77 13 chr9 77505264 77505342 -40357285 - MIR SINE MIR -166 96 14 182 315 14 41 chr9 77505431 77505504 -40357123 + MIR SINE MIR 36 106 -102 620 196 15 0 chr9 77505510 77505643 -40356984 - L1MB4 LINE L1 0 6180 6046 406 229 98 3 chr9 77505669 77505788 -40356839 + MIR SINE MIR 65 196 -66 1871 105 9 69 chr9 77506706 77507038 -40355589 + AluSx SINE Alu 1 312 0 452 294 81 34 chr9 77508092 77508357 -40354270 + L1ME LINE L1 5340 5621 -549 206 105 53 35 chr9 77508517 77508574 -40354053 + (TA)n Simple_repeat Simple_repeat 2 59 0 1845 125 0 21 chr9 77508675 77508956 -40353671 - AluSx SINE Alu -37 275 1 211 333 77 13 chr9 77509389 77509467 -40353160 - MIR SINE MIR -166 96 14 182 315 14 41 chr9 77509556 77509629 -40352998 + MIR SINE MIR 36 106 -102 620 196 15 0 chr9 77509635 77509768 -40352859 - L1MB4 LINE L1 0 6180 6046 406 229 98 3 chr9 77509794 77509913 -40352714 + MIR SINE MIR 65 196 -66 307 336 67 39 chr9 77510742 77510950 -40351677 + L1ME4a LINE L1 2208 2421 -3725 222 240 0 40 chr9 77510950 77511000 -40351627 - L2 LINE L2 -1 3312 3265 591 319 80 39 chr9 77511023 77511434 -40351193 + L1ME4a LINE L1 2429 2856 -3290 185 271 80 44 chr9 77511657 77511769 -40350858 + MIR SINE MIR 19 132 -123 695 253 0 19 chr9 77511797 77511955 -40350672 - MER5B DNA MER1_type -2 176 22 450 298 60 0 chr9 77512769 77512920 -40349707 - L3 LINE CR1 -72 1505 1346 252 86 0 0 chr9 77513412 77513447 -40349180 + (GGGA)n Simple_repeat Simple_repeat 4 38 0 515 263 59 25 chr9 77513457 77513777 -40348850 + L1ME4a LINE L1 5039 5369 -777 1231 214 31 7 chr9 77513797 77514087 -40348540 + AluJo SINE Alu 1 297 -15 469 236 22 23 chr9 77514096 77514256 -40348371 + L1ME4a LINE L1 5360 5518 -603 240 295 21 11 chr9 77514531 77514626 -40348001 + L1P LINE L1 5308 5403 -748 319 279 86 26 chr9 77514710 77515281 -40347346 + L1ME4a LINE L1 5490 6116 -5 460 276 148 13 chr9 77516429 77516651 -40345976 - L1ME LINE L1 -473 5648 5415 198 203 25 63 chr9 77516867 77516946 -40345681 + MIR3 SINE MIR 3 78 -130 451 230 13 72 chr9 77516990 77517142 -40345485 + MIR SINE MIR 70 212 -50 2152 94 16 13 chr9 77517516 77517823 -40344804 - AluSc SINE Alu -1 308 1 455 261 8 8 chr9 77517840 77517959 -40344668 - MIR3 SINE MIR -5 203 85 323 216 33 98 chr9 77518193 77518346 -40344281 - MIR SINE MIR -77 185 43 41 48 0 0 chr9 77518760 77518822 -40343805 + GC_rich Low_complexity Low_complexity 1 62 0 189 353 10 29 chr9 77521002 77521104 -40341523 + MIR SINE MIR 21 120 -142 189 167 0 28 chr9 77521200 77521236 -40341391 + MIR SINE MIR 217 251 -11 2230 93 6 0 chr9 77521287 77521598 -40341029 - AluSp SINE Alu 0 313 1 671 144 8 42 chr9 77522424 77522542 -40340085 - FRAM SINE Alu -14 162 49 838 240 150 22 chr9 77522625 77522991 -40339636 - L1ME4a LINE L1 0 6121 5709 437 144 2 3 chr9 77523354 77523434 -40339193 + L1MB8 LINE L1 6041 6128 -50 64 12 0 12 chr9 77523534 77523599 -40339028 + AT_rich Low_complexity Low_complexity 1 66 -15 1738 168 3 7 chr9 77523599 77523902 -40338725 + AluJo SINE Alu 1 302 -10 64 12 0 12 chr9 77523902 77523918 -40338709 + AT_rich Low_complexity Low_complexity 66 81 0 221 326 47 0 chr9 77523918 77524004 -40338623 + L2 LINE L2 3193 3282 -31 1813 242 103 20 chr9 77524004 77524499 -40338128 - MLT1K LTR MaLR 0 588 53 888 237 139 38 chr9 77525977 77526323 -40336304 - MLT1J2 LTR MaLR -2 448 68 624 313 56 21 chr9 77526349 77526691 -40335936 - LTR16B LTR ERVL -2 462 57 334 236 89 73 chr9 77526785 77526908 -40335719 - L2 LINE L2 -31 3241 3117 453 217 23 31 chr9 77527352 77527481 -40335146 + L2 LINE L2 3145 3272 0 2371 81 0 0 chr9 77528216 77528513 -40334114 + AluSg SINE Alu 1 297 -13 624 249 122 46 chr9 77529401 77529509 -40333118 - MIR SINE MIR 0 262 164 2375 51 0 0 chr9 77529509 77529803 -40332824 - AluY SINE Alu -16 295 2 624 249 122 46 chr9 77529803 77529944 -40332683 - MIR SINE MIR -98 164 5 655 290 149 41 chr9 77530560 77531092 -40331535 + L2 LINE L2 2725 3312 -1 264 324 69 0 chr9 77531242 77531344 -40331283 + MIR SINE MIR 111 219 -43 333 230 86 79 chr9 77531665 77531804 -40330823 + L2 LINE L2 3173 3312 -1 470 301 52 35 chr9 77532080 77532253 -40330374 + MIR SINE MIR 9 184 -78 211 231 0 0 chr9 77533208 77533247 -40329380 - L2 LINE L2 -13 3300 3262 424 171 12 12 chr9 77534875 77534957 -40327670 + MIR SINE MIR 71 152 -110 300 267 35 69 chr9 77535057 77535173 -40327454 + MIR SINE MIR 135 246 -16 296 178 56 93 chr9 77536859 77536966 -40325661 + MIR SINE MIR 110 212 -50 992 256 38 0 chr9 77537702 77537913 -40324714 - MIR SINE MIR -43 219 1 449 216 48 64 chr9 77537975 77538100 -40324527 - MIR3 SINE MIR -43 165 43 736 314 99 67 chr9 77538513 77539159 -40323468 + L3 LINE CR1 276 942 -635 245 239 136 11 chr9 77539391 77539479 -40323148 - L2 LINE L2 -13 3259 3161 2024 175 30 59 chr9 77539681 77540155 -40322472 + MER31B LTR ERV1 7 466 0 1655 193 44 57 chr9 77540493 77540546 -40322081 - MER31B LTR ERV1 0 466 414 1941 128 3 0 chr9 77540546 77540853 -40321774 + AluSx SINE Alu 1 308 0 1655 193 44 57 chr9 77540853 77541253 -40321374 - MER31B LTR ERV1 -52 414 18 1493 197 20 7 chr9 77541253 77541558 -40321069 + AluJo SINE Alu 1 309 -3 235 248 86 9 chr9 77541599 77541704 -40320923 - L2 LINE L2 -64 3249 3137 2189 161 33 31 chr9 77541768 77542310 -40320317 - MLT2A2 LTR ERVL -10 544 1 441 221 69 0 chr9 77542846 77542977 -40319650 - L1ME4a LINE L1 -1 6120 5981 234 0 0 0 chr9 77543046 77543072 -40319555 + (T)n Simple_repeat Simple_repeat 1 26 0 278 238 111 102 chr9 77543155 77543204 -40319423 - L1ME4a LINE L1 -301 5820 5773 2527 48 3 0 chr9 77543204 77543514 -40319113 - AluY SINE Alu 0 311 1 278 238 111 102 chr9 77543514 77543699 -40318928 - L1ME4a LINE L1 -348 5773 5584 392 246 200 0 chr9 77543709 77543839 -40318788 - MIR SINE MIR -11 251 96 1942 117 0 31 chr9 77543839 77544130 -40318497 + AluSx SINE Alu 1 282 -30 219 258 0 0 chr9 77544152 77544218 -40318409 - MIR SINE MIR -93 115 50 230 236 102 38 chr9 77544393 77544550 -40318077 - L1ME4a LINE L1 -2380 5428 5262 2109 105 0 13 chr9 77544563 77544869 -40317758 + AluSx SINE Alu 1 302 -10 245 196 59 108 chr9 77545692 77545794 -40316833 - L1 LINE L1 -2144 4002 3906 692 263 163 47 chr9 77546614 77547174 -40315453 - L2 LINE L2 -1 3312 2688 671 283 85 44 chr9 77547918 77548305 -40314322 - MLT1J LTR MaLR -21 470 99 2378 179 76 15 chr9 77548324 77548798 -40313829 - MLT1D LTR MaLR -2 503 1 342 309 67 30 chr9 77549856 77550021 -40312606 - MIR SINE MIR -48 214 44 198 103 0 0 chr9 77550432 77550461 -40312166 + (GGGA)n Simple_repeat Simple_repeat 4 32 0 1522 258 91 15 chr9 77551085 77551792 -40310835 - L2 LINE L2 0 3313 2550 610 77 0 0 chr9 77552437 77552515 -40310112 - MADE1 DNA Mariner -2 78 1 210 136 0 0 chr9 77552551 77552595 -40310032 + (TG)n Simple_repeat Simple_repeat 1 44 0 422 320 117 24 chr9 77552902 77553108 -40309519 - MIR SINE MIR 0 262 38 2210 88 0 0 chr9 77553379 77553674 -40308953 + AluSg SINE Alu 1 295 -15 706 251 25 49 chr9 77554042 77554245 -40308382 + MIR SINE MIR 32 229 -33 329 221 13 13 chr9 77554203 77554280 -40308347 - MIR SINE MIR -1 261 185 * 194 301 27 14 chr9 77554281 77554354 -40308273 + MIR SINE MIR 189 262 0 933 321 99 61 chr9 77554604 77555451 -40307176 - L3 LINE CR1 -439 1138 260 1350 179 86 10 chr9 77556012 77556303 -40306324 - L1ME3A LINE L1 -59 6111 5799 378 370 76 19 chr9 77556516 77556950 -40305677 + L2 LINE L2 2638 3096 -176 541 173 173 27 chr9 77557004 77557153 -40305474 + MER104 DNA Tc2 1 177 -3 1777 182 35 43 chr9 77557927 77558247 -40304380 - MLT1A1 LTR MaLR 0 365 47 2101 117 0 3 chr9 77558247 77558547 -40304080 - AluSx SINE Alu -13 299 1 1777 182 35 43 chr9 77558547 77558594 -40304033 - MLT1A1 LTR MaLR -318 47 1 216 220 20 0 chr9 77559346 77559396 -40303231 + T-rich Low_complexity Low_complexity 3 53 0 2015 127 0 0 chr9 77559656 77559948 -40302679 + AluSx SINE Alu 5 296 -16 311 306 75 15 chr9 77560063 77560197 -40302430 - MIR SINE MIR -55 207 66 215 263 88 0 chr9 77560707 77560764 -40301863 - MIR SINE MIR 0 262 201 200 179 154 77 chr9 77560761 77560839 -40301788 - MIR SINE MIR -178 84 1 * 227 306 124 61 chr9 77561244 77561623 -40301004 + L2 LINE L2 2860 3262 -10 429 193 63 19 chr9 77561788 77561907 -40300720 - MLT1G1 LTR MaLR 0 595 420 183 264 298 0 chr9 77561972 77562069 -40300558 + L2 LINE L2 3096 3228 -44 291 321 87 56 chr9 77562069 77562265 -40300362 + MIR3 SINE MIR 2 203 -5 193 299 58 11 chr9 77562347 77562434 -40300193 + L2 LINE L2 2870 2960 -312 251 308 29 10 chr9 77562716 77562820 -40299807 - L1MC/D LINE L1 -2091 5717 5612 674 251 194 9 chr9 77562820 77563139 -40299488 - LTR33A LTR ERVL 0 523 146 266 298 69 12 chr9 77563718 77563885 -40298742 - L1MC/D LINE L1 -679 5487 5314 196 274 0 48 chr9 77564611 77564673 -40297954 + MIR SINE MIR 85 143 -65 212 171 49 0 chr9 77564741 77564782 -40297845 - L2 LINE L2 -9 3304 3262 * 537 204 96 66 chr9 77564749 77564916 -40297711 - MIR SINE MIR -13 249 78 289 321 9 9 chr9 77565732 77565838 -40296789 - MIR3 SINE MIR -2 206 101 375 331 83 24 chr9 77566256 77566425 -40296202 + MIR3 SINE MIR 7 185 -23 275 260 56 48 chr9 77566952 77567110 -40295517 - MIR SINE MIR -41 167 36 465 212 106 9 chr9 77567223 77567336 -40295291 + MIR SINE MIR 85 208 -54 205 293 50 69 chr9 77567336 77567514 -40295113 + MIR SINE MIR 18 187 -75 211 39 0 0 chr9 77567587 77567613 -40295014 - MER5C DNA MER1_type -295 29 4 193 176 29 0 chr9 77568341 77568375 -40294252 - L2 LINE L2 -29 3243 3209 * 204 229 180 16 chr9 77568346 77568407 -40294220 - MIR SINE MIR -29 233 163 208 261 62 0 chr9 77568423 77568488 -40294139 + L2 LINE L2 3188 3256 -57 451 264 14 21 chr9 77568699 77568843 -40293784 - LTR16A LTR ERVL 0 450 308 2810 165 69 7 chr9 77569450 77570002 -40292625 - L1MB5 LINE L1 -6 6168 5583 376 282 112 18 chr9 77620429 77620467 -40242160 - LTR16B LTR ERVL 0 464 431 189 0 0 0 chr9 77620467 77620488 -40242139 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 376 282 112 18 chr9 77620488 77620527 -40242100 - LTR16B LTR ERVL -33 431 397 2026 89 4 11 chr9 77620527 77620808 -40241819 + AluSx SINE Alu 24 302 -10 376 282 112 18 chr9 77620808 77621078 -40241549 - LTR16B LTR ERVL -67 397 43 854 217 0 28 chr9 77621165 77621345 -40241282 - FAM SINE Alu 0 175 1 227 273 0 0 chr9 77621345 77621389 -40241238 - L2 LINE L2 -10 3262 3219 447 248 28 0 chr9 77621776 77621885 -40240742 + L2 LINE L2 3192 3303 -10 1403 272 66 45 chr9 77621885 77622650 -40239977 - L1MC4a LINE L1 -56 6065 5285 194 31 0 62 chr9 77622825 77622857 -40239770 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 324 314 20 0 chr9 77622879 77622981 -40239646 - L1MC4a LINE L1 -1140 5006 4903 289 276 0 0 chr9 77623218 77623276 -40239351 - MER5A DNA MER1_type -119 70 13 353 167 143 0 chr9 77623287 77623371 -40239256 + LTR33 LTR ERVL 2 97 -424 632 262 33 16 chr9 77623372 77623555 -40239072 - MIR SINE MIR -75 187 2 532 321 114 13 chr9 77623582 77623819 -40238808 + MIR SINE MIR 1 261 -1 190 318 156 23 chr9 77624570 77624743 -40237884 + L2 LINE L2 3000 3195 -118 1272 201 56 7 chr9 77624835 77625104 -40237523 - AluJo SINE Alu -30 282 1 260 290 10 70 chr9 77625242 77625342 -40237285 + MIR SINE MIR 104 197 -65 216 256 88 51 chr9 77625378 77625515 -40237112 - MIR SINE MIR -6 256 115 225 200 0 43 chr9 77625531 77625601 -40237026 + (CGGGG)n Simple_repeat Simple_repeat 3 69 0 33 66 0 0 chr9 77625799 77625860 -40236767 + GC_rich Low_complexity Low_complexity 1 61 0 186 279 44 44 chr9 77626854 77626922 -40235705 - MIR3 SINE MIR -32 176 109 287 318 24 0 chr9 77626996 77627081 -40235546 - MIR SINE MIR -115 147 61 334 298 0 39 chr9 77627456 77627560 -40235067 + MIR SINE MIR 57 156 -106 605 236 27 0 chr9 77628389 77628537 -40234090 - L1ME4a LINE L1 -2 6119 5968 25 0 0 0 chr9 77628856 77628881 -40233746 + AT_rich Low_complexity Low_complexity 1 25 0 359 261 219 17 chr9 77629004 77629123 -40233504 + MER5B DNA MER1_type 36 178 0 2259 99 0 0 chr9 77629658 77629960 -40232667 - AluSx SINE Alu -10 302 1 604 315 83 64 chr9 77630176 77630286 -40232341 - L1MEc LINE L1 -3992 2404 2298 2037 123 0 3 chr9 77630286 77630579 -40232048 + AluSx SINE Alu 1 292 -20 604 315 83 64 chr9 77630579 77630950 -40231677 - L1MEc LINE L1 -4098 2298 1914 390 250 95 58 chr9 77630958 77631321 -40231306 - L1MEc LINE L1 -861 1715 1534 309 250 38 12 chr9 77631323 77631403 -40231224 - L1MEc LINE L1 -5252 953 872 308 253 13 97 chr9 77631432 77631479 -40231148 - L1MEc LINE L1 -5977 228 179 2239 91 0 7 chr9 77631479 77631777 -40230850 - AluSq SINE Alu -17 296 1 308 253 13 97 chr9 77631777 77631883 -40230744 - L1MEc LINE L1 -6026 179 88 543 236 0 61 chr9 77631916 77632081 -40230546 - MLT1K LTR MaLR -3 585 431 244 208 0 0 chr9 77632129 77632177 -40230450 + (TG)n Simple_repeat Simple_repeat 2 49 0 369 265 0 34 chr9 77632177 77632294 -40230333 - MLT1K LTR MaLR -463 125 13 1836 107 0 4 chr9 77632404 77632665 -40229962 + AluSq SINE Alu 1 260 -53 399 303 8 17 chr9 77632753 77632872 -40229755 + MIR SINE MIR 143 260 -2 223 260 146 21 chr9 77632847 77632943 -40229684 - L2 LINE L2 -7 3265 3158 * 1832 146 130 3 chr9 77633159 77633481 -40229146 + MER47A DNA MER2_type 1 363 -3 668 246 83 24 chr9 77633651 77633939 -40228688 - L1ME4a LINE L1 -1 6120 5816 296 304 25 44 chr9 77634064 77634268 -40228359 - L1ME4a LINE L1 -357 5764 5565 186 43 0 0 chr9 77634359 77634382 -40228245 + (A)n Simple_repeat Simple_repeat 1 23 0 1857 140 0 26 chr9 77634629 77634795 -40227832 - AluJb SINE Alu -13 299 143 2322 68 0 13 chr9 77634795 77635103 -40227524 - AluY SINE Alu -7 304 1 1857 140 0 26 chr9 77635103 77635243 -40227384 - AluJb SINE Alu -169 143 1 2301 90 6 0 chr9 77635428 77635739 -40226888 - AluSq SINE Alu 0 313 1 1108 260 76 54 chr9 77635898 77636206 -40226421 - L1MC4 LINE L1 -1 8041 7714 2093 98 0 7 chr9 77636206 77636502 -40226125 - AluSx SINE Alu -18 294 1 1108 260 76 54 chr9 77636502 77636746 -40225881 - L1MC4 LINE L1 -328 7714 7477 2023 198 8 40 chr9 77636747 77637146 -40225481 - MLT1F LTR MaLR -29 513 128 570 172 11 0 chr9 77637166 77637259 -40225368 + MLT1F1 LTR MaLR 1 94 -473 211 280 125 66 chr9 77637774 77637952 -40224675 + MIR SINE MIR 12 195 -67 395 189 72 36 chr9 77637952 77638063 -40224564 + HsTC2 DNA Tc2 1 115 -1783 5553 74 7 3 chr9 77638080 77638792 -40223835 - L1PA11 LINE L1 -21 6153 5439 234 258 0 0 chr9 77638792 77638858 -40223769 + HsTC2 DNA Tc2 1828 1893 -5 408 259 51 19 chr9 77638877 77639035 -40223592 + L1MC5 LINE L1 7656 7818 -143 1464 140 0 5 chr9 77639035 77639256 -40223371 - AluSx SINE Alu -61 251 32 2222 86 3 13 chr9 77639738 77640040 -40222587 + AluY SINE Alu 4 302 -9 366 248 75 119 chr9 77640092 77640370 -40222257 + L2 LINE L2 2966 3231 -82 262 226 87 17 chr9 77641236 77641351 -40221276 - L2 LINE L2 -273 2999 2877 665 303 103 22 chr9 77642579 77642939 -40219688 - MLT1J LTR MaLR -49 462 74 506 253 122 41 chr9 77643036 77643257 -40219370 + MIR SINE MIR 5 243 -19 587 344 17 17 chr9 77643310 77643551 -40219076 + MIR SINE MIR 22 262 0 1959 146 0 0 chr9 77644087 77644382 -40218245 + AluJo SINE Alu 1 295 -17 857 240 78 0 chr9 77644469 77644686 -40217941 + MIR SINE MIR 29 262 0 458 99 14 0 chr9 77644829 77644900 -40217727 - L1MB8 LINE L1 0 6178 6107 219 317 40 0 chr9 77645438 77645539 -40217088 + MIR SINE MIR 119 223 -39 1498 112 4 40 chr9 77645581 77645830 -40216797 - AluSp SINE Alu -8 305 66 746 183 147 52 chr9 77645999 77646250 -40216377 - ORSL DNA AcHobo 0 275 1 256 274 0 0 chr9 77647005 77647056 -40215571 - MER5B DNA MER1_type -4 174 124 5318 84 14 30 chr9 77647068 77647225 -40215402 - L1MA2 LINE L1 0 6304 6146 2193 104 3 0 chr9 77647225 77647523 -40215104 - AluSx SINE Alu -13 299 1 5318 84 14 30 chr9 77647523 77647541 -40215086 - L1MA2 LINE L1 -158 6146 6129 477 0 0 0 chr9 77647548 77647601 -40215026 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 2077 121 0 0 chr9 77647601 77647883 -40214744 - AluSx SINE Alu -27 285 1 5318 84 14 30 chr9 77647883 77648502 -40214125 - L1MA2 LINE L1 -175 6129 5522 401 193 114 26 chr9 77648503 77648617 -40214010 - MER5B DNA MER1_type -34 144 21 311 320 105 17 chr9 77648656 77648828 -40213799 + MER20B DNA MER1_type 3 189 -594 387 288 115 0 chr9 77649638 77649777 -40212850 - MIR SINE MIR -77 185 31 2522 149 102 35 chr9 77650561 77650632 -40211995 - L1MB4 LINE L1 -1 6179 6114 1736 179 7 0 chr9 77650632 77650939 -40211688 + AluJo SINE Alu 1 309 -3 2522 149 102 35 chr9 77650939 77651404 -40211223 - L1MB4 LINE L1 -66 6114 5607 401 259 283 6 chr9 77651753 77652096 -40210531 - L2 LINE L2 -433 2881 2444 219 232 21 84 chr9 77652069 77652164 -40210463 - MIR3 SINE MIR -8 200 112 * 232 175 0 0 chr9 77652277 77652317 -40210310 + MIR SINE MIR 105 144 -118 1998 129 0 7 chr9 77652520 77652815 -40209812 - AluSx SINE Alu -19 293 1 284 334 141 44 chr9 77653197 77653517 -40209110 + L2 LINE L2 2887 3237 -35 261 313 73 21 chr9 77653930 77654026 -40208601 - MIR3 SINE MIR -21 187 87 2250 100 0 0 chr9 77654130 77654430 -40208197 - AluSx SINE Alu -12 300 1 340 279 36 67 chr9 77654440 77654605 -40208022 - MER5A DNA MER1_type -28 161 2 23 33 0 0 chr9 77654688 77654718 -40207909 + AT_rich Low_complexity Low_complexity 1 30 0 200 269 0 0 chr9 77654967 77655019 -40207608 + CT-rich Low_complexity Low_complexity 2 53 0 2599 231 43 30 chr9 77655708 77656352 -40206275 + MER82 DNA MER2_type 1 653 0 437 276 43 50 chr9 77657188 77657365 -40205262 - MIR SINE MIR -63 145 11 264 209 179 0 chr9 77658720 77658787 -40203840 - MIR3 SINE MIR -15 193 115 742 268 95 54 chr9 77659104 77659825 -40202802 - L1MC5 LINE L1 -32 7929 7263 700 241 82 125 chr9 77659877 77660064 -40202563 - L1MC5 LINE L1 -733 7228 7035 2078 107 0 26 chr9 77660064 77660372 -40202255 - AluSq SINE Alu -13 300 1 700 241 82 125 chr9 77660372 77660573 -40202054 - L1MC5 LINE L1 -926 7035 6827 1706 161 7 23 chr9 77660573 77660883 -40201744 - AluJo SINE Alu -7 305 1 700 241 82 125 chr9 77660883 77661140 -40201487 - L1MC5 LINE L1 -1134 6827 6561 1294 179 88 7 chr9 77661140 77661436 -40201191 - MER33 DNA MER1_type -4 320 1 700 241 82 125 chr9 77661436 77661792 -40200835 - L1MC5 LINE L1 -1400 6561 6287 1869 143 0 32 chr9 77661793 77662101 -40200526 - AluSx SINE Alu -14 298 1 183 238 24 0 chr9 77662256 77662298 -40200329 + MIR SINE MIR 105 147 -61 385 280 131 61 chr9 77662727 77663102 -40199525 - L1ME4a LINE L1 -103 6018 5618 344 226 59 29 chr9 77663514 77663616 -40199011 + MER5A DNA MER1_type 7 111 -78 375 261 23 46 chr9 77663746 77663876 -40198751 + MER5A DNA MER1_type 63 189 0 202 229 104 125 chr9 77664917 77664972 -40197655 + MIR SINE MIR 97 106 -102 1988 114 13 3 chr9 77664972 77665270 -40197357 + AluSx SINE Alu 1 301 -11 202 229 104 125 chr9 77665270 77665310 -40197317 + MIR SINE MIR 106 145 -63 24 32 0 0 chr9 77666087 77666118 -40196509 + AT_rich Low_complexity Low_complexity 1 31 0 2069 112 10 7 chr9 77666206 77666509 -40196118 - AluSx SINE Alu -8 304 1 207 225 90 54 chr9 77666853 77666964 -40195663 - MIR SINE MIR -57 151 37 5360 86 59 50 chr9 77668494 77668518 -40194109 + MER4D LTR ERV1 1 23 -849 2179 103 0 0 chr9 77668518 77668818 -40193809 + AluSx SINE Alu 1 300 -12 5360 86 59 50 chr9 77668818 77669328 -40193299 + MER4D LTR ERV1 23 549 -323 263 28 28 0 chr9 77669328 77669364 -40193263 + (CACCC)n Simple_repeat Simple_repeat 5 41 0 5360 86 59 50 chr9 77669364 77669692 -40192935 + MER4D LTR ERV1 549 872 0 456 263 45 13 chr9 77669862 77669977 -40192650 + MIR SINE MIR 102 225 -37 3737 142 45 13 chr9 77669977 77670592 -40192035 - MER41B LTR ERV1 0 635 1 456 263 45 13 chr9 77670592 77670632 -40191995 + MIR SINE MIR 225 262 0 22 35 0 0 chr9 77670645 77670674 -40191953 + AT_rich Low_complexity Low_complexity 1 29 0 194 216 196 52 chr9 77671358 77671426 -40191201 + MIR SINE MIR 36 93 -115 5114 143 21 44 chr9 77671426 77671797 -40190830 + MER54A LTR ERVL 1 379 -522 1832 133 11 0 chr9 77671797 77672103 -40190524 + AluSq SINE Alu 13 321 0 5114 143 21 44 chr9 77672103 77672261 -40190366 + MER54A LTR ERVL 379 539 -362 1796 120 8 4 chr9 77672261 77672527 -40190100 - AluSx SINE Alu -45 267 1 5114 143 21 44 chr9 77672527 77672917 -40189710 + MER54A LTR ERVL 539 901 0 194 216 196 52 chr9 77672917 77672945 -40189682 + MIR SINE MIR 93 146 -62 1398 261 127 40 chr9 77672950 77673211 -40189416 - L1M4c LINE L1 -4276 2287 2050 243 0 0 0 chr9 77673211 77673238 -40189389 + (TA)n Simple_repeat Simple_repeat 1 27 0 1398 261 127 40 chr9 77673238 77673823 -40188804 - L1M4c LINE L1 -4513 2050 1518 230 0 33 0 chr9 77673823 77673853 -40188774 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1480 149 37 19 chr9 77673856 77674124 -40188503 - AluJo SINE Alu -30 282 10 1398 261 127 40 chr9 77674124 77674403 -40188224 - L1M4c LINE L1 -5046 1517 909 2081 205 186 6 chr9 77674403 77674925 -40187702 - MLT1E1 LTR MaLR -38 616 1 1161 234 69 133 chr9 77674925 77675652 -40186975 - MLT1E1-int LTR MaLR 0 1371 692 575 222 75 87 chr9 77675783 77675932 -40186695 - MLT1E1-int LTR MaLR -709 662 516 315 0 0 0 chr9 77675932 77675967 -40186660 + (TC)n Simple_repeat Simple_repeat 1 35 0 575 222 75 87 chr9 77675967 77676069 -40186558 - MLT1E1-int LTR MaLR -855 516 414 26 0 0 0 chr9 77676084 77676110 -40186517 + AT_rich Low_complexity Low_complexity 1 26 0 267 188 0 0 chr9 77676111 77676159 -40186468 - MLT1E1-int LTR MaLR -945 426 379 5572 127 15 24 chr9 77676177 77676540 -40186087 - L1MA4 LINE L1 -2 6298 5933 1874 147 6 13 chr9 77676540 77676852 -40185775 - AluSx SINE Alu 0 312 3 2040 125 3 0 chr9 77676857 77677160 -40185467 - AluSx SINE Alu -8 304 1 5572 127 15 24 chr9 77677160 77677707 -40184920 - L1MA4 LINE L1 -371 5929 5390 430 198 12 0 chr9 77677709 77677795 -40184832 - MLT1E1-int LTR MaLR -982 389 303 1473 140 0 21 chr9 77677822 77678058 -40184569 - AluJo SINE Alu -45 267 37 350 158 298 0 chr9 77678061 77678175 -40184452 - MLT1E1-int LTR MaLR -1223 148 1 1172 179 105 19 chr9 77678175 77678432 -40184195 - MLT1E1 LTR MaLR 0 654 376 337 162 114 105 chr9 77678427 77678532 -40184095 + MLT1E1 LTR MaLR 194 400 -254 * 584 231 54 25 chr9 77678866 77678931 -40183696 - MER5A DNA MER1_type -1 188 126 2130 106 3 3 chr9 77678931 77679232 -40183395 + AluSx SINE Alu 1 301 -11 584 231 54 25 chr9 77679232 77679345 -40183282 - MER5A DNA MER1_type -63 126 4 294 260 94 8 chr9 77679498 77679625 -40183002 - MIR3 SINE MIR -1 207 70 411 21 0 0 chr9 77680044 77680092 -40182535 + (TAA)n Simple_repeat Simple_repeat 3 50 0 629 296 44 30 chr9 77680092 77680295 -40182332 - MIR SINE MIR -29 233 28 2076 129 0 0 chr9 77681008 77681310 -40181317 - AluSx SINE Alu -10 302 1 627 319 149 3 chr9 77681333 77681668 -40180959 - L3 LINE CR1 -5 1572 1189 300 91 0 0 chr9 77681858 77681902 -40180725 + (TG)n Simple_repeat Simple_repeat 1 44 0 579 261 148 35 chr9 77681939 77681997 -40180630 + HAL1 LINE L1 2248 2298 -209 2261 97 0 0 chr9 77681997 77682297 -40180330 + AluSx SINE Alu 1 300 -12 579 261 148 35 chr9 77682297 77682468 -40180159 + HAL1 LINE L1 2298 2503 -4 370 298 90 28 chr9 77682550 77682728 -40179899 + MIR SINE MIR 4 192 -70 219 341 0 11 chr9 77683045 77683136 -40179491 - MIR3 SINE MIR -9 199 110 476 288 26 13 chr9 77683558 77683711 -40178916 - MIR3 SINE MIR -24 184 30 405 0 0 0 chr9 77683852 77683897 -40178730 + (TCTA)n Simple_repeat Simple_repeat 1 45 0 230 255 133 20 chr9 77684301 77684399 -40178228 - L1ME4a LINE L1 -48 6073 5965 319 349 86 6 chr9 77684408 77684583 -40178044 - L3 LINE CR1 -201 1376 1188 424 301 55 14 chr9 77684608 77684754 -40177873 - MIR SINE MIR -2 260 109 238 396 9 0 chr9 77684764 77684875 -40177752 - L3 LINE CR1 -513 1064 953 230 304 194 19 chr9 77685802 77686065 -40176562 - L2 LINE L2 -7 3265 2957 404 299 106 13 chr9 77686355 77686666 -40175961 + L2 LINE L2 1851 2190 -1124 1983 132 0 22 chr9 77686680 77686991 -40175636 - AluSq SINE Alu -9 304 1 2076 120 3 0 chr9 77687034 77687334 -40175293 - AluSx SINE Alu -11 301 1 314 289 57 46 chr9 77687355 77687549 -40175078 - MLT1J LTR MaLR -28 483 288 284 179 67 46 chr9 77688073 77688101 -40174526 - MLT1L LTR MaLR -377 134 108 1779 92 6 111 chr9 77688101 77688426 -40174201 - AluSg SINE Alu -9 291 1 284 179 67 46 chr9 77688426 77688519 -40174108 - MLT1L LTR MaLR -403 108 20 540 270 181 51 chr9 77689588 77689981 -40172646 + MLT1K LTR MaLR 136 579 -9 2033 123 0 3 chr9 77690899 77691200 -40171427 + AluSx SINE Alu 13 312 0 424 255 0 40 chr9 77691297 77691458 -40171169 + MIR SINE MIR 37 188 -74 2027 105 7 3 chr9 77691661 77691947 -40170680 - AluSq SINE Alu -20 293 7 970 264 165 24 chr9 77691958 77692382 -40170245 - MLT1K LTR MaLR -13 575 92 767 235 43 0 chr9 77692855 77693017 -40169610 + MER45A DNA AcHobo 10 178 0 660 190 140 0 chr9 77693330 77693485 -40169142 + MER5A DNA MER1_type 4 183 -6 2164 164 8 10 chr9 77693603 77693986 -40168641 - MLT1B LTR MaLR -8 382 1 295 291 23 0 chr9 77694018 77694104 -40168523 - MIR SINE MIR -15 247 160 222 208 21 0 chr9 77694115 77694163 -40168464 - L2 LINE L2 -13 3259 3211 201 217 163 54 chr9 77694200 77694292 -40168335 - MIR SINE MIR -60 148 47 2190 114 0 0 chr9 77694397 77694696 -40167931 - AluSx SINE Alu -13 299 1 2069 123 0 19 chr9 77695080 77695390 -40167237 - AluSx SINE Alu -8 304 1 690 344 106 24 chr9 77695690 77696181 -40166446 - L3 LINE CR1 -197 1380 850 254 317 83 0 chr9 77696370 77696490 -40166137 + MLT1J LTR MaLR 3 132 -379 378 42 0 0 chr9 77696587 77696635 -40165992 + (GA)n Simple_repeat Simple_repeat 1 48 0 1365 108 28 5 chr9 77696638 77696850 -40165777 + Tigger7 DNA MER2_type 2267 2483 -8 462 178 111 89 chr9 77696978 77697056 -40165571 + MLT1J LTR MaLR 327 411 -100 2123 119 0 0 chr9 77697056 77697359 -40165268 - AluSg SINE Alu -7 303 1 462 178 111 89 chr9 77697359 77697415 -40165212 + MLT1J LTR MaLR 411 464 -47 613 272 60 77 chr9 77697619 77697968 -40164659 - L2 LINE L2 -16 3256 2914 359 250 0 12 chr9 77698760 77698844 -40163783 + MIR3 SINE MIR 90 172 -36 198 285 56 49 chr9 77698861 77699005 -40163622 + MIR3 SINE MIR 30 174 -34 1678 152 60 0 chr9 77699149 77699432 -40163195 + L1PA15 LINE L1 5864 6163 -2 1909 96 4 0 chr9 77699450 77699701 -40162926 + AluSx SINE Alu 40 291 -21 451 309 122 32 chr9 77700087 77700430 -40162197 + L2 LINE L2 2939 3312 -1 699 276 46 5 chr9 77700610 77700827 -40161800 - L2 LINE L2 -1303 2011 1786 532 272 17 44 chr9 77701010 77701190 -40161437 - MIR3 SINE MIR -14 194 20 234 0 0 0 chr9 77701625 77701651 -40160976 + (CAT)n Simple_repeat Simple_repeat 2 27 0 1424 152 43 40 chr9 77701654 77701956 -40160671 - L1MB3 LINE L1 -6 6177 5875 366 357 38 11 chr9 77702625 77702837 -40159790 - MIR3 SINE MIR -53 209 1 287 339 76 18 chr9 77702906 77703077 -40159550 + L2 LINE L2 2431 2611 -703 323 288 22 43 chr9 77703136 77703275 -40159352 + MER103 DNA DNA 23 158 -8 585 196 146 51 chr9 77703638 77703681 -40158946 - AluJo SINE Alu -138 174 136 255 31 0 0 chr9 77703681 77703713 -40158914 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 585 196 146 51 chr9 77703713 77703761 -40158866 - AluJo SINE Alu -176 136 94 1787 163 35 37 chr9 77703761 77704135 -40158492 - THE1C LTR MaLR -2 373 1 585 196 146 51 chr9 77704135 77704200 -40158427 - AluJo SINE Alu -218 94 2 282 282 0 0 chr9 77704230 77704301 -40158326 + L1ME4a LINE L1 5494 5564 -557 468 211 55 0 chr9 77704302 77704411 -40158216 + L2 LINE L2 3194 3308 -5 754 266 97 9 chr9 77704411 77704742 -40157885 + L1ME4a LINE L1 5566 5925 -196 317 190 38 13 chr9 77704787 77704866 -40157761 + L1ME4a LINE L1 6041 6121 0 555 281 9 75 chr9 77705879 77706076 -40156551 + MIR SINE MIR 48 230 -32 2204 128 6 14 chr9 77706076 77706420 -40156207 + MER2 DNA MER2_type 4 344 0 555 281 9 75 chr9 77706420 77706450 -40156177 + MIR SINE MIR 230 260 -2 338 317 40 0 chr9 77706456 77706557 -40156070 - L2 LINE L2 0 3272 3168 615 310 88 58 chr9 77706628 77707025 -40155602 + L2 LINE L2 2864 3272 0 268 239 80 138 chr9 77707427 77707615 -40155012 + MIR3 SINE MIR 30 206 -2 1456 194 46 58 chr9 77708120 77708272 -40154355 - L1MB7 LINE L1 0 6184 6032 1840 82 13 73 chr9 77708272 77708575 -40154052 + AluSg SINE Alu 1 285 -25 1456 194 46 58 chr9 77708575 77708768 -40153859 - L1MB7 LINE L1 -152 6032 5843 2302 79 0 0 chr9 77709244 77709535 -40153092 + AluY SINE Alu 1 291 -20 5579 34 3 10 chr9 77709557 77710229 -40152398 + L1PA7 LINE L1 5486 6152 -2 387 302 122 74 chr9 77710638 77711070 -40151557 - L1M4 LINE L1 -965 5181 4733 314 292 143 6 chr9 77711388 77711549 -40151078 + MLT1J LTR MaLR 281 463 -48 344 328 91 22 chr9 77711566 77711901 -40150726 - L1M4 LINE L1 -1964 4182 3826 623 186 241 14 chr9 77712070 77712215 -40150412 + MER5A DNA MER1_type 6 183 -6 1506 101 114 4 chr9 77712231 77712468 -40150159 + AluSq SINE Alu 1 263 -50 210 37 0 0 chr9 77712476 77712503 -40150124 + (TC)n Simple_repeat Simple_repeat 1 27 0 * 363 23 0 0 chr9 77712502 77712546 -40150081 + (CA)n Simple_repeat Simple_repeat 1 44 0 196 163 61 20 chr9 77712707 77712756 -40149871 - L2 LINE L2 -2737 577 527 299 346 39 66 chr9 77713497 77713679 -40148948 - MIR SINE MIR -55 207 31 367 155 17 0 chr9 77714880 77714938 -40147689 - MER5B DNA MER1_type 0 178 120 541 241 41 94 chr9 77715182 77715618 -40147009 + L1ME LINE L1 526 938 -5132 3102 164 20 0 chr9 77715675 77716211 -40146416 + L1MC3 LINE L1 7238 7784 -1 2170 212 46 19 chr9 77716206 77716748 -40145879 + L1ME1 LINE L1 5466 6022 -144 * 238 118 0 0 chr9 77716748 77716782 -40145845 + MER3 DNA MER1_type 16 49 -160 269 188 213 0 chr9 77716794 77716874 -40145753 + L1ME2 LINE L1 6068 6164 0 230 235 272 12 chr9 77716893 77716974 -40145653 - MER5B DNA MER1_type -76 102 1 341 337 195 0 chr9 77717844 77718034 -40144593 - L3 LINE CR1 -11 1566 1340 195 376 26 34 chr9 77718075 77718192 -40144435 - L3 LINE CR1 -348 1229 1114 237 267 23 23 chr9 77718212 77718298 -40144329 - L2 LINE L2 -4 3309 3224 2014 130 3 0 chr9 77718493 77718792 -40143835 - AluSx SINE Alu -12 300 1 368 255 51 0 chr9 77719133 77719231 -40143396 - MIR SINE MIR -113 149 47 234 278 25 123 chr9 77719292 77719454 -40143173 - L2 LINE L2 0 3272 3127 281 317 36 30 chr9 77719636 77719803 -40142824 + L2 LINE L2 2505 2672 -642 243 308 77 50 chr9 77720120 77720150 -40142477 - L1MA9 LINE L1 -383 5929 5900 769 297 37 63 chr9 77720150 77720204 -40142423 - L1ME3 LINE L1 -272 5892 5838 2764 121 34 5 chr9 77720204 77720618 -40142009 - MSTB LTR MaLR 0 426 1 769 297 37 63 chr9 77720618 77720833 -40141794 - L1ME3 LINE L1 -326 5838 5636 1830 166 126 3 chr9 77720833 77721158 -40141469 + MLT1A1 LTR MaLR 1 365 0 769 297 37 63 chr9 77721158 77721315 -40141312 - L1ME3 LINE L1 -528 5636 5476 373 302 79 40 chr9 77721333 77721535 -40141092 + L2 LINE L2 2653 2862 -452 244 300 31 161 chr9 77721609 77721751 -40140876 + L2 LINE L2 2872 2940 -332 1870 103 36 7 chr9 77721751 77722032 -40140595 - AluSx SINE Alu -21 291 3 244 300 31 161 chr9 77722032 77722249 -40140378 + L2 LINE L2 2940 3184 -88 346 294 103 8 chr9 77722384 77722510 -40140117 - MIR3 SINE MIR -54 154 17 369 221 52 73 chr9 77723065 77723201 -40139426 + MIR SINE MIR 130 262 0 292 337 0 0 chr9 77723446 77723541 -40139086 - MIR3 SINE MIR -27 181 87 231 239 0 0 chr9 77723913 77723980 -40138647 + CT-rich Low_complexity Low_complexity 4 70 0 375 281 96 52 chr9 77724319 77724523 -40138104 - MIR SINE MIR -50 212 4 345 47 0 0 chr9 77724843 77724886 -40137741 + (TTCA)n Simple_repeat Simple_repeat 1 43 0 263 309 20 99 chr9 77725948 77726100 -40136527 - MIR SINE MIR -10 252 113 2207 109 0 0 chr9 77726203 77726514 -40136113 - AluY SINE Alu 0 311 1 427 273 227 25 chr9 77727463 77727661 -40134966 + MIR SINE MIR 19 256 -6 798 121 0 15 chr9 77727982 77728114 -40134513 - L1MA3 LINE L1 0 6305 6176 1489 161 80 4 chr9 77728147 77728253 -40134374 + AluJo SINE Alu 5 101 -211 225 0 0 0 chr9 77728253 77728278 -40134349 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 1489 161 80 4 chr9 77728278 77728445 -40134182 + AluJo SINE Alu 101 299 -13 956 301 145 6 chr9 77728493 77728852 -40133775 - MLT1I LTR MaLR 0 409 1 266 248 33 74 chr9 77729375 77729497 -40133130 - MIR SINE MIR -92 116 1 876 180 34 0 chr9 77729958 77730136 -40132491 - MER53 DNA DNA 0 189 6 207 262 0 0 chr9 77730201 77730262 -40132365 + (TG)n Simple_repeat Simple_repeat 2 62 0 2105 130 0 0 chr9 77730367 77730674 -40131953 + AluSq SINE Alu 1 307 -6 353 322 90 16 chr9 77730687 77730932 -40131695 - L2 LINE L2 -509 2805 2543 335 337 0 0 chr9 77731038 77731130 -40131497 + L2 LINE L2 3181 3272 0 351 221 0 0 chr9 77731163 77731249 -40131378 + GA-rich Low_complexity Low_complexity 3 88 0 275 157 0 71 chr9 77731337 77731407 -40131220 + MIR SINE MIR 187 251 -11 198 189 0 0 chr9 77731723 77731760 -40130867 + L2 LINE L2 3225 3261 -11 407 315 62 7 chr9 77732082 77732228 -40130399 + L2 LINE L2 3147 3300 -13 207 0 0 0 chr9 77732228 77732251 -40130376 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 4787 122 14 22 chr9 77732704 77733490 -40129137 - L1MA4A LINE L1 -3 6300 5521 242 297 102 42 chr9 77733625 77733743 -40128884 + L2 LINE L2 3148 3272 0 397 316 15 8 chr9 77733859 77733992 -40128635 - L3 LINE CR1 -74 1503 1370 749 229 1 128 chr9 77734009 77734303 -40128324 + MIR SINE MIR 4 258 -4 22 56 0 0 chr9 77734622 77734658 -40127969 + AT_rich Low_complexity Low_complexity 1 36 0 1385 161 0 20 chr9 77734686 77734934 -40127693 - AluJo SINE Alu -47 265 23 182 219 24 0 chr9 77735360 77735401 -40127226 - MIR3 SINE MIR -16 192 151 404 285 69 8 chr9 77735630 77735760 -40126867 - MIR SINE MIR -50 212 75 216 0 0 0 chr9 77735967 77735991 -40126636 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 185 304 87 0 chr9 77736032 77736101 -40126526 - MIR SINE MIR -81 127 53 306 311 0 39 chr9 77736506 77736609 -40126018 - MIR SINE MIR -117 145 47 302 252 99 29 chr9 77736875 77737012 -40125615 + MIR SINE MIR 38 184 -62 393 58 0 0 chr9 77737117 77737169 -40125458 + (CA)n Simple_repeat Simple_repeat 1 52 0 486 277 116 7 chr9 77737192 77737347 -40125280 - MIR SINE MIR -38 224 53 754 155 176 0 chr9 77737381 77737523 -40125104 - MER5A DNA MER1_type -21 168 2 2020 89 4 7 chr9 77737727 77738007 -40124620 + AluSc SINE Alu 16 294 -15 527 172 0 20 chr9 77738623 77738722 -40123905 - L1M4 LINE L1 -1205 4941 4845 2157 177 12 9 chr9 77738722 77739141 -40123486 + L1M4 LINE L1 4667 5086 -1060 1480 247 113 0 chr9 77739138 77739591 -40123036 - L1M4 LINE L1 -1627 4519 4016 * 1338 105 5 0 chr9 77739599 77739790 -40122837 - AluSg SINE Alu -118 192 1 250 209 0 110 chr9 77739794 77739846 -40122781 - L1M4 LINE L1 -2163 3983 3944 2149 114 13 0 chr9 77739846 77740154 -40122473 + AluSx SINE Alu 1 312 0 250 209 0 110 chr9 77740154 77740192 -40122435 - L1M4 LINE L1 -2202 3944 3903 315 213 49 0 chr9 77740558 77740619 -40122008 - MER96B DNA MER1_type? 0 417 354 651 225 66 70 chr9 77740665 77740745 -40121882 - MIR SINE MIR -34 228 149 1953 122 0 44 chr9 77740745 77741064 -40121563 - AluSx SINE Alu -7 305 1 651 225 66 70 chr9 77741064 77741194 -40121433 - MIR SINE MIR -113 149 17 620 188 19 111 chr9 77741194 77741401 -40121226 - MER5A DNA MER1_type 0 189 2 651 225 66 70 chr9 77741401 77741416 -40121211 - MIR SINE MIR -245 17 3 532 271 12 41 chr9 77742160 77742330 -40120297 + MER5B DNA MER1_type 8 172 -6 555 284 40 0 chr9 77742544 77742692 -40119935 - MIR SINE MIR -74 188 35 189 323 0 16 chr9 77742715 77742777 -40119850 - L3 LINE CR1 -120 1457 1397 368 301 128 0 chr9 77743271 77743404 -40119223 + MIR3 SINE MIR 48 197 -11 461 188 129 0 chr9 77743434 77743535 -40119092 - MER81 DNA DNA 0 114 1 1000 245 48 54 chr9 77744513 77744852 -40117775 - L1MC5 LINE L1 -146 7815 7478 691 151 0 0 chr9 77744852 77744971 -40117656 + L1MA4 LINE L1 6178 6296 -4 1000 245 48 54 chr9 77744971 77745093 -40117534 - L1MC5 LINE L1 -483 7478 7357 2097 41 38 15 chr9 77745125 77745392 -40117235 - AluY SINE Alu -10 301 29 1635 146 73 4 chr9 77745436 77745697 -40116930 - AluJo SINE Alu -12 300 22 1949 236 116 12 chr9 77746056 77746557 -40116070 + MLT1H1 LTR MaLR 3 555 0 661 284 39 18 chr9 77747453 77747735 -40114892 - L1ME4a LINE L1 -240 5881 5594 227 333 37 37 chr9 77748292 77748400 -40114227 + MIR SINE MIR 26 133 -129 626 243 0 20 chr9 77749578 77749730 -40112897 - MER112 DNA MER1_type -25 235 87 351 242 96 30 chr9 77749812 77749970 -40112657 - MER20B DNA MER1_type -18 201 31 2008 158 3 6 chr9 77750241 77750552 -40112075 + AluJo SINE Alu 1 310 -2 2340 65 4 0 chr9 77751112 77751389 -40111238 + AluSp SINE Alu 1 278 -35 189 0 0 0 chr9 77751390 77751411 -40111216 + (CAAAA)n Simple_repeat Simple_repeat 1 21 0 453 310 6 34 chr9 77751556 77751739 -40110888 - MER5A DNA MER1_type 0 189 3 355 294 189 7 chr9 77751929 77752082 -40110545 + MIR3 SINE MIR 21 201 -7 1742 95 9 5 chr9 77752096 77752317 -40110310 - AluSx SINE Alu -90 222 1 227 141 43 54 chr9 77752378 77752470 -40110157 + (TTAA)n Simple_repeat Simple_repeat 4 94 0 182 41 61 41 chr9 77752507 77752556 -40110071 + (TAA)n Simple_repeat Simple_repeat 2 51 0 33 0 0 0 chr9 77752556 77752589 -40110038 + AT_rich Low_complexity Low_complexity 1 33 0 513 138 0 25 chr9 77752686 77752766 -40109861 - FLAM SINE Alu -26 117 40 2566 67 0 3 chr9 77752783 77753095 -40109532 - AluY SINE Alu 0 311 1 248 252 107 29 chr9 77753711 77753814 -40108813 - LTR16A1 LTR ERVL 0 457 347 474 169 39 0 chr9 77754379 77754456 -40108171 - FLAM SINE Alu -24 119 40 2008 324 53 19 chr9 77754600 77756340 -40106287 - ERVL LTR ERVL -438 5326 3504 1439 297 57 55 chr9 77756334 77757031 -40105596 + ERVL LTR ERVL 2164 2862 -2902 * 1479 242 58 29 chr9 77757590 77758036 -40104591 - LTR16C LTR ERVL 0 491 33 1060 289 91 36 chr9 77759272 77759766 -40102861 - Charlie8 DNA MER1_type -1868 549 29 1997 128 3 55 chr9 77759777 77760104 -40102523 + AluSx SINE Alu 1 310 -2 278 305 38 23 chr9 77760712 77760843 -40101784 - MIR3 SINE MIR -65 143 11 567 305 0 7 chr9 77761016 77761167 -40101460 + MIR SINE MIR 112 261 -1 340 246 200 0 chr9 77761587 77761697 -40100930 - L2 LINE L2 -2 3311 3180 278 340 9 0 chr9 77761882 77761988 -40100639 + MIR SINE MIR 79 185 -77 586 294 76 9 chr9 77763326 77763537 -40099090 + MIR SINE MIR 38 262 0 454 147 28 46 chr9 77763581 77763690 -40098937 - L1PA16 LINE L1 -7 6159 6053 736 240 113 39 chr9 77764508 77764737 -40097890 - MIR SINE MIR -2 260 15 819 228 140 9 chr9 77765073 77765301 -40097326 - MIR SINE MIR 0 262 5 2314 200 74 11 chr9 77765370 77765926 -40096701 + L1ME1 LINE L1 5571 6161 -5 318 364 91 14 chr9 77766273 77766416 -40096211 + MIR3 SINE MIR 21 174 -34 2530 66 3 0 chr9 77766710 77767011 -40095616 + AluY SINE Alu 1 302 -9 231 291 96 35 chr9 77767239 77767438 -40095189 - L1ME3A LINE L1 -1 6169 5959 1686 258 73 2 chr9 77767507 77768058 -40094569 - L1ME3A LINE L1 -222 5948 5359 4020 166 23 8 chr9 77768067 77768818 -40093809 - L1MB5 LINE L1 0 6174 5413 886 105 6 35 chr9 77768838 77769010 -40093617 + (TTCC)n Simple_repeat Simple_repeat 1 167 0 1932 115 49 14 chr9 77769010 77769296 -40093331 - AluSg SINE Alu -14 296 1 396 195 58 0 chr9 77769297 77769384 -40093243 - L1MB5 LINE L1 -752 5426 5335 309 307 123 63 chr9 77769920 77769954 -40092673 + L2 LINE L2 2920 2951 -321 1685 182 27 0 chr9 77769954 77770251 -40092376 - AluJo SINE Alu -7 305 1 309 307 123 63 chr9 77770251 77770548 -40092079 + L2 LINE L2 2951 3271 -1 856 121 57 0 chr9 77770956 77771080 -40091547 - FLAM_C SINE Alu -2 131 1 758 163 6 0 chr9 77771809 77771969 -40090658 + (CAACC)n Simple_repeat Simple_repeat 2 162 0 226 257 48 57 chr9 77772352 77772457 -40090170 - L2 LINE L2 -31 3241 3138 25 83 0 0 chr9 77772606 77772666 -40089961 + AT_rich Low_complexity Low_complexity 1 60 0 477 278 118 50 chr9 77772674 77773174 -40089453 - L1ME4a LINE L1 -70 6051 5518 408 355 26 26 chr9 77773438 77773593 -40089034 - MER5B DNA MER1_type -21 157 3 215 250 0 0 chr9 77773599 77773647 -40088980 - MIR3 SINE MIR -52 156 109 292 321 99 43 chr9 77773709 77773871 -40088756 + L2 LINE L2 3102 3272 0 439 216 10 10 chr9 77774282 77774379 -40088248 - MIR SINE MIR -89 119 23 2097 159 0 0 chr9 77774421 77774729 -40087898 + AluSx SINE Alu 5 312 0 184 232 54 0 chr9 77774760 77774816 -40087811 - MIR SINE MIR -8 254 196 302 270 79 0 chr9 77774816 77774905 -40087722 - L1MC4 LINE L1 -1334 6708 6613 217 173 58 0 chr9 77774906 77774958 -40087669 + (TATATG)n Simple_repeat Simple_repeat 6 60 0 231 258 0 0 chr9 77775025 77775091 -40087536 + L2 LINE L2 2635 2700 -614 711 154 57 63 chr9 77775134 77775309 -40087318 + MER5A DNA MER1_type 15 188 -1 2031 186 41 53 chr9 77775375 77775886 -40086741 + MLT1D LTR MaLR 1 505 0 1334 137 4 68 chr9 77776083 77776317 -40086310 - AluJb SINE Alu -23 289 71 250 295 39 0 chr9 77776344 77776422 -40086205 + L2 LINE L2 3190 3270 -2 485 240 19 0 chr9 77776567 77776671 -40085956 + MIR3 SINE MIR 93 198 -10 1369 115 0 98 chr9 77777502 77777737 -40084890 + AluJo SINE Alu 1 212 -100 539 163 0 0 chr9 77777924 77778004 -40084623 + AluJo SINE Alu 216 295 -17 362 354 129 22 chr9 77778004 77778408 -40084219 + L2 LINE L2 2516 2962 -352 452 244 10 142 chr9 77778446 77778519 -40084108 + MER5A DNA MER1_type 4 85 -104 1821 169 26 13 chr9 77778519 77778827 -40083800 + AluJb SINE Alu 1 312 0 452 244 10 142 chr9 77778827 77778958 -40083669 + MER5A DNA MER1_type 85 181 -8 502 260 192 14 chr9 77778968 77779176 -40083451 + MIR SINE MIR 4 248 -14 293 336 51 80 chr9 77779557 77779932 -40082695 - L2 LINE L2 -16 3297 2934 237 208 120 80 chr9 77780408 77780533 -40082094 + MIR3 SINE MIR 74 203 -5 546 222 60 8 chr9 77781237 77781354 -40081273 + L2 LINE L2 3190 3312 -1 321 337 0 0 chr9 77781732 77781824 -40080803 - MIR3 SINE MIR -34 174 83 252 296 73 62 chr9 77781974 77782153 -40080474 + MIR SINE MIR 1 181 -81 220 340 57 28 chr9 77782222 77782328 -40080299 + L2 LINE L2 3164 3272 0 567 324 27 5 chr9 77782369 77782554 -40080073 - MIR SINE MIR -72 190 2 367 264 66 0 chr9 77783153 77783244 -40079383 + MIR3 SINE MIR 91 187 -21 336 289 126 5 chr9 77783714 77783900 -40078727 + MIR SINE MIR 30 237 -25 186 43 0 0 chr9 77785401 77785424 -40077203 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 184 315 54 33 chr9 77785480 77785572 -40077055 - L2 LINE L2 -57 3215 3122 1116 163 27 0 chr9 77786235 77786419 -40076208 - MER5A DNA MER1_type 0 189 1 684 264 66 74 chr9 77786419 77786661 -40075966 + MIR SINE MIR 9 248 -14 1263 220 148 26 chr9 77786661 77787088 -40075539 - MLT1D LTR MaLR 0 505 27 305 228 95 5 chr9 77787472 77787568 -40075059 - MIR SINE MIR -58 150 90 463 319 55 0 chr9 77787677 77787840 -40074787 - MIR SINE MIR -34 228 57 521 228 80 11 chr9 77788159 77788320 -40074307 + MIR SINE MIR 16 183 -63 629 218 11 86 chr9 77788327 77788501 -40074126 + MER5B DNA MER1_type 18 178 0 186 191 119 0 chr9 77788503 77788545 -40074082 + MIR SINE MIR 196 242 -20 268 236 14 56 chr9 77788566 77788638 -40073989 - L2 LINE L2 0 3313 3245 352 304 6 6 chr9 77789072 77789243 -40073384 + (TG)n Simple_repeat Simple_repeat 2 172 0 284 328 17 11 chr9 77789259 77789436 -40073191 + (TG)n Simple_repeat Simple_repeat 2 179 0 479 323 93 18 chr9 77790429 77790655 -40071972 - MIR SINE MIR -8 254 12 290 241 47 73 chr9 77790683 77790803 -40071824 - MER5B DNA MER1_type -56 133 6 492 313 83 21 chr9 77790832 77791024 -40071603 + MIR SINE MIR 53 256 -6 234 349 0 0 chr9 77791337 77791400 -40071227 + MIR SINE MIR 88 150 -58 326 129 16 0 chr9 77791613 77791675 -40070952 + GA-rich Low_complexity Low_complexity 1 63 0 540 242 8 8 chr9 77792272 77792396 -40070231 - MIR3 SINE MIR -19 189 66 357 306 32 54 chr9 77792435 77792621 -40070006 + L3 LINE CR1 1255 1436 -141 192 333 25 25 chr9 77793281 77793362 -40069265 + MIR SINE MIR 17 97 -111 215 264 19 0 chr9 77794398 77794451 -40068176 - L2 LINE L2 -529 2785 2732 362 233 190 43 chr9 77794703 77794866 -40067761 - MIR3 SINE MIR -7 201 15 432 261 168 65 chr9 77795065 77795387 -40067240 - L2 LINE L2 0 3272 2918 437 295 18 0 chr9 77795469 77795581 -40067046 - MIR SINE MIR 0 262 149 240 245 138 53 chr9 77796469 77796563 -40066064 + MIR3 SINE MIR 59 160 -48 218 79 0 26 chr9 77797008 77797046 -40065581 + (TTTC)n Simple_repeat Simple_repeat 4 40 0 1022 279 101 27 chr9 77797382 77797945 -40064682 - L1MC4a LINE L1 -1913 5895 5291 189 74 0 0 chr9 77798034 77798061 -40064566 + (TTA)n Simple_repeat Simple_repeat 2 28 0 201 276 17 0 chr9 77798211 77798269 -40064358 + MIR3 SINE MIR 96 154 -54 1793 174 3 13 chr9 77798269 77798567 -40064060 + AluJb SINE Alu 1 295 -17 192 77 0 0 chr9 77798590 77798616 -40064011 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 502 333 49 44 chr9 77799281 77799565 -40063062 + L1ME2 LINE L1 5530 5818 -346 2409 79 3 13 chr9 77799565 77799870 -40062757 + AluSq SINE Alu 1 302 -11 502 333 49 44 chr9 77799870 77799994 -40062633 + L1ME2 LINE L1 5818 5940 -224 1808 173 17 0 chr9 77800205 77800494 -40062133 - AluJo SINE Alu -18 294 1 24 32 0 0 chr9 77800495 77800526 -40062101 + AT_rich Low_complexity Low_complexity 1 31 0 894 203 0 0 chr9 77800530 77800673 -40061954 - FRAM SINE Alu -30 146 4 759 195 105 5 chr9 77800673 77800883 -40061744 - MER33 DNA MER1_type -93 231 1 222 118 0 0 chr9 77800996 77801030 -40061597 + (ATG)n Simple_repeat Simple_repeat 1 34 0 1877 140 27 7 chr9 77801036 77801329 -40061298 - AluJo SINE Alu -13 299 1 288 242 187 0 chr9 77801329 77801420 -40061207 - MIR SINE MIR -1 261 154 267 123 0 35 chr9 77801423 77801480 -40061147 - L1MB3 LINE L1 0 6183 6129 264 280 254 8 chr9 77801846 77801964 -40060663 + MIR SINE MIR 64 210 -52 234 249 32 142 chr9 77802189 77802344 -40060283 - MIR SINE MIR -71 137 19 889 214 91 9 chr9 77802817 77803037 -40059590 + MIR SINE MIR 24 261 -1 2093 145 0 0 chr9 77803182 77803485 -40059142 - AluSx SINE Alu -9 303 1 681 190 46 99 chr9 77803561 77803824 -40058803 - MER112 DNA MER1_type -4 256 8 396 289 72 31 chr9 77804628 77804822 -40057805 + MIR SINE MIR 11 212 -50 245 172 103 0 chr9 77806205 77806263 -40056364 - L2 LINE L2 -19 3253 3190 233 254 15 0 chr9 77806736 77806803 -40055824 + L1ME LINE L1 5717 5784 -337 2338 102 0 13 chr9 77807034 77807349 -40055278 + AluSx SINE Alu 1 311 -1 378 0 0 0 chr9 77807417 77807459 -40055168 + (CA)n Simple_repeat Simple_repeat 2 43 0 491 297 34 11 chr9 77807939 77808114 -40054513 + MIR SINE MIR 84 262 0 239 333 99 9 chr9 77808604 77808715 -40053912 - MIR SINE MIR -61 147 27 8008 133 30 115 chr9 77809201 77811052 -40051575 - pTR5 LTR ERV1 0 2438 745 284 308 119 19 chr9 77811052 77811211 -40051416 - MIR SINE MIR -53 209 35 718 224 62 6 chr9 77811462 77811623 -40051004 + MIR SINE MIR 56 225 -37 209 282 91 7 chr9 77811986 77812103 -40050524 - MIR SINE MIR -67 141 18 185 243 0 0 chr9 77812453 77812490 -40050137 + MER5B DNA MER1_type 3 39 -139 336 233 8 85 chr9 77812546 77812675 -40049952 - MER5A DNA MER1_type -37 152 34 184 320 0 26 chr9 77812606 77812684 -40049943 + MER5B DNA MER1_type 90 165 -13 * 727 301 61 64 chr9 77812685 77813093 -40049534 + L2 LINE L2 2866 3272 0 482 234 139 30 chr9 77814181 77814382 -40048245 - MIR SINE MIR -3 259 37 451 226 44 15 chr9 77814496 77814633 -40047994 - MLT1I LTR MaLR -2 407 267 186 143 0 0 chr9 77814963 77814998 -40047629 + (TTCA)n Simple_repeat Simple_repeat 2 36 0 723 304 8 51 chr9 77815509 77815766 -40046861 - MIR SINE MIR -14 248 3 223 267 153 23 chr9 77815981 77816112 -40046515 - MIR3 SINE MIR -38 170 23 603 245 98 79 chr9 77816266 77816686 -40045941 + L1ME4a LINE L1 5678 6105 -16 242 307 36 51 chr9 77816822 77816959 -40045668 + MIR SINE MIR 3 137 -71 1892 169 16 3 chr9 77817905 77818212 -40044415 - AluJb SINE Alu -1 311 1 2087 99 0 55 chr9 77818250 77818543 -40044084 - AluSx SINE Alu -15 297 21 331 280 29 91 chr9 77818615 77818790 -40043837 - L1MCa LINE L1 -4304 2122 1959 733 214 79 79 chr9 77818855 77819070 -40043557 - MIR SINE MIR -3 259 45 536 213 0 33 chr9 77820466 77820649 -40041978 + C-rich Low_complexity Low_complexity 3 179 0 381 232 250 0 chr9 77821120 77821232 -40041395 - MER103 DNA DNA -1 165 26 229 261 249 51 chr9 77821389 77821646 -40040981 + L3 LINE CR1 1163 1470 -107 233 376 106 18 chr9 77822129 77822459 -40040168 - L2 LINE L2 0 3272 2914 249 365 39 11 chr9 77822542 77822723 -40039904 - L2 LINE L2 -553 2761 2576 * 304 306 78 39 chr9 77822717 77822923 -40039704 - L2 LINE L2 -1325 1989 1776 565 329 152 41 chr9 77823917 77824781 -40037846 + L2 LINE L2 2305 3272 0 190 245 11 21 chr9 77825006 77825100 -40037527 + CT-rich Low_complexity Low_complexity 3 95 0 334 310 40 0 chr9 77825152 77825252 -40037375 + L3 LINE CR1 1352 1455 -122 1933 138 1 16 chr9 77825258 77825804 -40036823 - MER4A LTR ERV1 0 664 1 13529 116 53 37 chr9 77825805 77827010 -40035617 - MER4A-int LTR ERV1 0 6598 5414 2243 113 0 0 chr9 77827010 77827302 -40035325 - AluSq SINE Alu -21 292 1 13529 116 53 37 chr9 77827302 77828657 -40033970 - MER4A-int LTR ERV1 -1184 5414 3997 268 125 0 0 chr9 77828657 77828697 -40033930 - HERVK3 LTR ERVK -7203 40 1 2233 175 26 14 chr9 77828704 77829127 -40033500 - LTR3 LTR ERVK 0 432 5 888 160 5 60 chr9 77829130 77829330 -40033297 - MER4A-int LTR ERV1 -2595 4003 3815 6480 142 54 53 chr9 77829332 77831096 -40031531 - MER4A-int LTR ERV1 -2370 4306 2545 2255 95 40 7 chr9 77831096 77831392 -40031235 - AluSg SINE Alu -4 306 1 6480 142 54 53 chr9 77831392 77831967 -40030660 - MER4A-int LTR ERV1 -4131 2545 189 1312 247 65 11 chr9 77831966 77832318 -40030309 - MER4A-int LTR ERV1 -4107 2224 1854 * 2649 103 191 8 chr9 77832528 77833004 -40029623 - MER4A-int LTR ERV1 -6035 563 1 1881 133 124 23 chr9 77833007 77833557 -40029070 - MER4A LTR ERV1 0 664 1 220 294 109 0 chr9 77833557 77833649 -40028978 + L3 LINE CR1 1458 1559 -18 365 176 0 15 chr9 77834913 77834981 -40027646 + MIR SINE MIR 82 148 -60 221 309 31 21 chr9 77835619 77835716 -40026911 - MIR SINE MIR -59 149 52 205 358 11 0 chr9 77835775 77835870 -40026757 + MIR3 SINE MIR 2 97 -111 259 296 8 72 chr9 77835915 77836040 -40026587 - MER5B DNA MER1_type -3 175 59 800 230 65 94 chr9 77836271 77836718 -40025909 - L1MC5 LINE L1 -76 7885 7452 886 273 81 53 chr9 77836787 77837315 -40025312 + L1ME4a LINE L1 5533 6075 -46 243 146 0 0 chr9 77837366 77837421 -40025206 + (GA)n Simple_repeat Simple_repeat 2 56 0 1969 133 0 64 chr9 77837577 77837907 -40024720 - AluSx SINE Alu -3 309 1 592 207 142 18 chr9 77838036 77838205 -40024422 + MIR SINE MIR 60 249 -13 235 267 222 0 chr9 77838559 77838649 -40023978 - L2 LINE L2 -6 3307 3198 242 185 57 134 chr9 77838946 77839103 -40023524 + MIR3 SINE MIR 6 150 -58 314 331 8 16 chr9 77839238 77839362 -40023265 + MIR SINE MIR 60 182 -80 205 275 206 35 chr9 77839951 77840238 -40022389 - L2 LINE L2 -1 3271 2936 313 337 18 18 chr9 77840736 77840899 -40021728 + L2 LINE L2 2311 2473 -841 329 248 76 45 chr9 77841866 77842023 -40020604 + L1MC5 LINE L1 7752 7913 -48 2009 80 0 15 chr9 77842661 77842923 -40019704 - AluY SINE Alu 0 311 54 458 278 78 25 chr9 77843016 77843209 -40019418 + MIR SINE MIR 20 213 -49 2002 121 108 6 chr9 77843626 77843958 -40018669 + MER47A DNA MER2_type 1 366 0 423 196 37 111 chr9 77843981 77844170 -40018457 - MIR3 SINE MIR 0 208 34 286 222 146 103 chr9 77844959 77845144 -40017483 + L2 LINE L2 2863 3055 -217 454 303 0 0 chr9 77846413 77846535 -40016092 - L3 LINE CR1 -111 1466 1345 34 24 0 0 chr9 77846624 77846665 -40015962 + AT_rich Low_complexity Low_complexity 1 41 0 1449 96 13 35 chr9 77846710 77846763 -40015864 + L1PB1 LINE L1 5921 5974 -177 2232 104 3 10 chr9 77846763 77847060 -40015567 + AluSg SINE Alu 1 295 -15 1449 96 13 35 chr9 77847060 77847235 -40015392 + L1PB1 LINE L1 5974 6144 -7 21 0 0 0 chr9 77847240 77847261 -40015366 + AT_rich Low_complexity Low_complexity 1 21 0 2301 83 0 3 chr9 77848034 77848334 -40014293 + AluSq SINE Alu 1 299 -14 220 294 0 0 chr9 77850011 77850062 -40012565 - L3 LINE CR1 -2 1575 1525 31 44 0 0 chr9 77850150 77850195 -40012432 + AT_rich Low_complexity Low_complexity 1 45 0 568 272 37 139 chr9 77850242 77850595 -40012032 - HAL1 LINE L1 -788 1719 1497 1852 109 88 0 chr9 77850595 77850880 -40011747 - AluSg SINE Alu 0 310 1 568 272 37 139 chr9 77850880 77851356 -40011271 - HAL1 LINE L1 -1010 1497 974 258 32 0 0 chr9 77852979 77853010 -40009617 + (A)n Simple_repeat Simple_repeat 1 31 0 182 313 75 0 chr9 77853629 77853709 -40008918 + L2 LINE L2 3169 3254 -18 204 185 296 12 chr9 77853876 77853957 -40008670 + MIR SINE MIR 49 152 -110 204 231 19 0 chr9 77854040 77854092 -40008535 + CT-rich Low_complexity Low_complexity 2 54 0 849 147 0 0 chr9 77855829 77855958 -40006669 + FLAM_C SINE Alu 1 129 -14 23 0 0 0 chr9 77855963 77855986 -40006641 + AT_rich Low_complexity Low_complexity 1 23 0 223 294 82 93 chr9 77855987 77856375 -40006252 - L2 LINE L2 -79 3193 2810 410 216 117 27 chr9 77856484 77856658 -40005969 + L1MC/D LINE L1 5461 5635 -486 229 281 49 0 chr9 77856656 77856738 -40005889 + L1MC/D LINE L1 5843 5928 -1880 * 2154 124 0 0 chr9 77857621 77857928 -40004699 + AluSg SINE Alu 1 307 -3 803 164 0 8 chr9 77859077 77859211 -40003416 - AluJb SINE Alu -179 133 1 927 165 6 24 chr9 77860588 77860758 -40001869 - L1MB7 LINE L1 -15 6169 6003 216 376 68 0 chr9 77860912 77861029 -40001598 + L2 LINE L2 3143 3267 -5 23 0 0 0 chr9 77861059 77861082 -40001545 + AT_rich Low_complexity Low_complexity 1 23 0 222 238 71 60 chr9 77861297 77861381 -40001246 - L2 LINE L2 0 3272 3188 603 240 261 34 chr9 77863297 77863622 -39999005 - MLT1J2 LTR MaLR -9 440 39 434 329 13 38 chr9 77863718 77863876 -39998751 + MIR3 SINE MIR 52 205 -3 932 226 48 1 chr9 77863946 77864178 -39998449 - MIR SINE MIR -20 242 3 346 186 0 0 chr9 77864580 77864639 -39997988 + MER91 DNA MER1_type 131 189 -1 510 215 208 7 chr9 77864692 77864836 -39997791 + MER5A DNA MER1_type 11 183 -6 1966 135 58 25 chr9 77864837 77865200 -39997427 - THE1C LTR MaLR 0 375 1 398 351 54 17 chr9 77866859 77866912 -39995715 - MIR SINE MIR -3 259 209 267 31 0 0 chr9 77866912 77866944 -39995683 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 1688 45 0 0 chr9 77866944 77867146 -39995481 - L1PA4 LINE L1 -10 6145 5944 398 351 54 17 chr9 77867146 77867339 -39995288 - MIR SINE MIR -52 210 4 457 270 26 21 chr9 77867745 77867919 -39994708 + MIR SINE MIR 25 192 -68 399 292 58 26 chr9 77868706 77868850 -39993777 - MIR SINE MIR -59 149 33 556 246 9 0 chr9 77869033 77869147 -39993480 - L2 LINE L2 -2 3311 3197 303 307 22 44 chr9 77869427 77869564 -39993063 - MIR3 SINE MIR -7 201 68 228 322 56 79 chr9 77871076 77871290 -39991337 - L2 LINE L2 -1 3271 3063 516 206 191 0 chr9 77871308 77871434 -39991193 + MER5A DNA MER1_type 40 189 0 749 265 11 22 chr9 77874271 77874456 -39988171 + MIR3 SINE MIR 22 204 -4 4457 136 30 29 chr9 77874931 77875719 -39986908 - L1MB7 LINE L1 -16 6168 5380 934 246 30 13 chr9 77875876 77876112 -39986515 - MIR SINE MIR -13 249 10 569 264 52 119 chr9 77876294 77876714 -39985913 - MLT1K LTR MaLR -15 573 182 571 261 5 64 chr9 77877018 77877206 -39985421 - MIR SINE MIR -50 212 36 399 283 61 47 chr9 77877636 77877847 -39984780 - MIR SINE MIR -49 213 5 369 195 41 89 chr9 77877939 77878062 -39984565 - MLT1K LTR MaLR 0 588 472 231 61 0 0 chr9 77878617 77878650 -39983977 + (TA)n Simple_repeat Simple_repeat 1 33 0 1568 162 0 35 chr9 77878674 77878964 -39983663 - AluJb SINE Alu -32 280 1 1776 172 23 3 chr9 77878999 77879302 -39983325 + AluJb SINE Alu 4 312 0 310 340 86 6 chr9 77880867 77881029 -39981598 + MIR3 SINE MIR 15 189 -19 317 226 183 9 chr9 77881069 77881184 -39981443 - MIR SINE MIR -71 191 57 525 324 123 42 chr9 77881511 77881795 -39980832 - L2 LINE L2 0 3272 2966 463 371 105 8 chr9 77881909 77882300 -39980327 - L2 LINE L2 -474 2840 2412 183 327 296 7 chr9 77882784 77883233 -39979394 - L2 LINE L2 -952 2362 1784 381 249 54 83 chr9 77883282 77883487 -39979140 - L1ME4a LINE L1 -4 6117 5919 325 259 35 12 chr9 77883474 77883559 -39979068 - HAL1b LINE L1 -24 1324 1238 * 228 86 0 0 chr9 77884982 77885017 -39977610 + (T)n Simple_repeat Simple_repeat 1 35 0 448 251 194 17 chr9 77885021 77885196 -39977431 + L3 LINE CR1 1369 1574 -3 255 282 47 0 chr9 77885547 77885632 -39976995 + MIR SINE MIR 41 129 -133 212 282 0 84 chr9 77885762 77885833 -39976794 - MIR SINE MIR -72 136 85 185 296 19 0 chr9 77886476 77886530 -39976097 - L2 LINE L2 -13 3259 3205 2116 109 10 13 chr9 77886576 77886888 -39975739 + AluSp SINE Alu 1 311 -2 500 265 106 13 chr9 77887197 77887398 -39975229 + MIR SINE MIR 18 239 -23 564 316 53 88 chr9 77887490 77887958 -39974669 - L2 LINE L2 -8 3264 2813 430 264 61 81 chr9 77889512 77889709 -39972918 - MIR SINE MIR -61 201 9 429 20 0 0 chr9 77891442 77891492 -39971135 + (TG)n Simple_repeat Simple_repeat 2 51 0 237 303 13 72 chr9 77891568 77891720 -39970907 - MLT1K LTR MaLR -231 357 215 3016 136 48 92 chr9 77891973 77892084 -39970543 + LTR9 LTR ERV1 1 115 -497 2315 98 0 0 chr9 77892084 77892389 -39970238 - AluSc SINE Alu -2 307 3 3016 136 48 92 chr9 77892389 77892917 -39969710 + LTR9 LTR ERV1 115 612 0 361 235 86 175 chr9 77893399 77893633 -39968994 + MIR SINE MIR 46 258 -4 1104 149 6 0 chr9 77894274 77894448 -39968179 - AluJo SINE Alu -9 303 129 221 194 0 16 chr9 77894450 77894512 -39968115 + (TA)n Simple_repeat Simple_repeat 1 61 0 563 187 0 0 chr9 77894513 77894604 -39968023 - AluJo SINE Alu -190 122 32 1093 244 126 39 chr9 77894760 77895150 -39967477 - LTR16C LTR ERVL 0 491 68 398 271 125 61 chr9 77895992 77896128 -39966499 + HAL1b LINE L1 219 345 -1003 644 195 8 0 chr9 77896128 77896246 -39966381 + FLAM_A SINE Alu 5 123 -10 204 40 0 0 chr9 77896253 77896278 -39966349 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 398 271 125 61 chr9 77896278 77896638 -39965989 + HAL1b LINE L1 350 608 -740 359 208 92 39 chr9 77896900 77897030 -39965597 - MER113 DNA MER1_type? -384 137 1 677 311 98 10 chr9 77897722 77898028 -39964599 - LTR16C LTR ERVL -7 484 152 387 279 65 84 chr9 77898370 77898725 -39963902 + L1 LINE L1 3139 3486 -2660 2454 43 0 23 chr9 77898736 77899038 -39963589 + AluY SINE Alu 1 295 -16 410 305 63 38 chr9 77899392 77899631 -39962996 - L2 LINE L2 -55 3258 3014 1645 148 7 48 chr9 77899825 77900116 -39962511 + AluJo SINE Alu 1 279 -33 358 290 129 14 chr9 77900132 77900446 -39962181 - LTR33A LTR ERVL -41 482 105 379 301 118 31 chr9 77901470 77901770 -39960857 - L2 LINE L2 -260 3053 2743 657 284 14 10 chr9 77901999 77902207 -39960420 - L2 LINE L2 -588 2726 2518 280 294 14 119 chr9 77902283 77902426 -39960201 + L2 LINE L2 3142 3269 -3 2168 179 19 47 chr9 77902517 77902946 -39959681 + MER47B DNA MER2_type 1 417 -1 2190 112 7 3 chr9 77902987 77903283 -39959344 + AluSq SINE Alu 3 299 -14 516 255 77 129 chr9 77903984 77904595 -39958032 - MLT1K LTR MaLR 0 588 10 488 267 48 30 chr9 77905145 77905310 -39957317 - MIR3 SINE MIR -6 202 35 975 249 117 53 chr9 77905762 77906216 -39956411 + LTR33 LTR ERVL 39 521 0 233 238 48 0 chr9 77907142 77907226 -39955401 + (TA)n Simple_repeat Simple_repeat 1 88 0 260 275 83 9 chr9 77907496 77907605 -39955022 - L1ME3 LINE L1 -86 6076 5960 1611 203 55 113 chr9 77907935 77908625 -39954002 - LTR8A LTR ERV1 0 727 1 781 193 52 130 chr9 77908887 77909156 -39953471 - MER112 DNA MER1_type -11 249 2 228 219 158 24 chr9 77909320 77909402 -39953225 + MLT1K LTR MaLR 139 231 -357 2225 91 0 3 chr9 77910239 77910546 -39952081 + AluSx SINE Alu 1 306 0 372 248 127 0 chr9 77912170 77912308 -39950319 + MER20B DNA MER1_type 62 218 -1 320 262 74 98 chr9 77912314 77912558 -39950069 + MLT1K LTR MaLR 211 448 -140 1682 169 10 24 chr9 77912661 77912957 -39949670 + AluJb SINE Alu 1 292 -20 1512 117 5 9 chr9 77913612 77913834 -39948793 - AluSg/x SINE Alu -13 297 77 232 167 0 21 chr9 77915677 77915725 -39946902 + (CA)n Simple_repeat Simple_repeat 2 48 0 254 48 71 0 chr9 77915912 77915954 -39946673 + A-rich Low_complexity Low_complexity 2 46 0 413 254 128 83 chr9 77916286 77916707 -39945920 + L1MEd LINE L1 180 619 -5586 1435 123 36 64 chr9 77916737 77917027 -39945600 + AluSx SINE Alu 40 322 0 2302 224 43 28 chr9 77917099 77917774 -39944853 + L1M4 LINE L1 4403 5087 -1059 1283 199 92 7 chr9 77917763 77918044 -39944583 + L1MC1 LINE L1 6029 6333 0 * 676 300 19 16 chr9 77918044 77918372 -39944255 + L1MEd LINE L1 1465 1694 -4521 6268 50 25 11 chr9 77918390 77919142 -39943485 + L1PA7 LINE L1 5379 6141 -13 207 0 0 0 chr9 77919146 77919169 -39943458 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 299 190 17 0 chr9 77919169 77919227 -39943400 + MSTB LTR MaLR 45 103 -323 1196 242 114 40 chr9 77919235 77919417 -39943210 + MLT1H LTR MaLR 11 178 -412 1931 159 0 10 chr9 77919417 77919725 -39942902 - AluJb SINE Alu -7 305 1 1196 242 114 40 chr9 77919725 77920024 -39942603 + MLT1H LTR MaLR 178 572 -18 778 274 65 70 chr9 77920239 77920684 -39941943 - MLT1J LTR MaLR -64 447 5 239 242 283 8 chr9 77920776 77920896 -39941731 + MIR3 SINE MIR 18 170 -38 243 316 184 7 chr9 77920956 77921108 -39941519 - MIR SINE MIR -55 207 29 498 273 32 37 chr9 77921192 77921379 -39941248 + MER5A DNA MER1_type 1 186 -3 355 253 39 110 chr9 77921657 77921839 -39940788 - MIR SINE MIR -12 250 82 252 0 0 0 chr9 77923674 77923702 -39938925 + (CGG)n Simple_repeat Simple_repeat 2 29 0 365 285 153 80 chr9 77923724 77924286 -39938341 - L1M2 LINE L1 -5715 1134 532 332 264 125 35 chr9 77924958 77925102 -39937525 - MIR SINE MIR -65 197 41 272 294 184 9 chr9 77927339 77927448 -39935179 - MIR SINE MIR -58 150 23 192 294 20 0 chr9 77929191 77929242 -39933385 - MIR SINE MIR -93 169 118 231 125 0 0 chr9 77929307 77929339 -39933288 - Tigger5 DNA MER2_type 0 2323 2292 270 0 0 0 chr9 77929714 77929744 -39932883 + (T)n Simple_repeat Simple_repeat 1 30 0 2274 105 0 7 chr9 77929765 77930071 -39932556 + AluSg SINE Alu 1 304 -6 947 222 112 53 chr9 77930689 77931045 -39931582 + L2 LINE L2 2930 3306 -7 259 261 242 7 chr9 77931099 77931252 -39931375 - L2 LINE L2 -835 2479 2291 189 74 0 0 chr9 77931342 77931369 -39931258 + (TC)n Simple_repeat Simple_repeat 2 28 0 249 271 171 8 chr9 77931991 77932120 -39930507 + MIR SINE MIR 112 261 -1 * 1046 258 98 9 chr9 77932103 77932421 -39930206 + L3 LINE CR1 1229 1574 -3 26 30 0 0 chr9 77934224 77934257 -39928370 + AT_rich Low_complexity Low_complexity 1 33 0 24 32 0 0 chr9 77935337 77935368 -39927259 + AT_rich Low_complexity Low_complexity 1 31 0 2111 88 3 37 chr9 77935522 77935816 -39926811 - AluSq SINE Alu -29 284 1 1997 231 118 63 chr9 77935854 77936957 -39925670 - L1M4 LINE L1 -1060 5086 3924 1191 126 0 45 chr9 77937058 77937257 -39925370 - AluJo SINE Alu -6 306 117 190 257 68 40 chr9 77937982 77938056 -39924571 + MIR3 SINE MIR 121 196 -12 245 254 0 30 chr9 77938359 77938426 -39924201 + L2 LINE L2 3249 3313 0 257 287 64 11 chr9 77938432 77938526 -39924101 - MIR SINE MIR -13 249 151 536 281 153 7 chr9 77938836 77939124 -39923503 - L1ME4a LINE L1 -199 5922 5593 344 206 65 22 chr9 77939159 77939251 -39923376 - L3 LINE CR1 -688 889 794 189 299 11 46 chr9 77940205 77940292 -39922335 - L2 LINE L2 -999 2315 2232 311 167 0 0 chr9 77941062 77941116 -39921511 - HsTC2 DNA Tc2 -1598 300 247 1717 150 86 10 chr9 77941185 77941499 -39921128 + MER46B DNA MER2_type 24 236 0 231 271 29 0 chr9 77941598 77941668 -39920959 - HsTC2 DNA Tc2 -1821 77 6 222 373 0 45 chr9 77941988 77942098 -39920529 + MIR3 SINE MIR 98 202 -6 383 299 78 13 chr9 77942560 77942714 -39919913 + L2 LINE L2 3108 3271 -1 193 344 72 32 chr9 77944224 77944349 -39918278 + L2 LINE L2 3141 3270 -2 2819 209 43 52 chr9 77944847 77945458 -39917169 - MER77 LTR ERV1 0 605 1 347 289 70 16 chr9 77945693 77945821 -39916806 - L2 LINE L2 -8 3305 3171 191 283 0 19 chr9 77945927 77945980 -39916647 - L2 LINE L2 -224 3048 2997 216 0 0 0 chr9 77946307 77946331 -39916296 + (A)n Simple_repeat Simple_repeat 1 24 0 257 250 262 0 chr9 77946990 77947074 -39915553 - MIR3 SINE MIR -18 190 85 2073 144 3 3 chr9 77947448 77947760 -39914867 + AluSx SINE Alu 1 312 0 362 293 64 21 chr9 77949129 77949317 -39913310 + HAL1b LINE L1 514 709 -639 2210 106 14 0 chr9 77949521 77949814 -39912813 + AluSq SINE Alu 1 297 -16 219 161 36 18 chr9 77949872 77949928 -39912699 + T-rich Low_complexity Low_complexity 5 61 0 373 306 18 55 chr9 77951384 77951547 -39911080 + MIR SINE MIR 37 192 -70 1373 111 30 10 chr9 77951650 77951849 -39910778 + AluSg/x SINE Alu 100 302 -10 459 0 0 0 chr9 77952634 77952685 -39909942 + (TA)n Simple_repeat Simple_repeat 2 52 0 352 279 26 58 chr9 77952767 77952921 -39909706 + MIR SINE MIR 66 214 -48 2192 126 0 0 chr9 77953684 77953986 -39908641 - AluSx SINE Alu -10 302 1 22 80 0 0 chr9 77955493 77955543 -39907084 + AT_rich Low_complexity Low_complexity 1 50 0 1377 125 0 10 chr9 77956638 77956838 -39905789 - AluSc SINE Alu -19 290 93 1446 240 108 32 chr9 77956988 77957580 -39905047 - L1MC5 LINE L1 -25 7936 7300 2095 97 0 28 chr9 77957740 77958063 -39904564 + AluSg1 SINE Alu 1 315 0 188 286 9 114 chr9 77959806 77959911 -39902716 + MIR SINE MIR 58 151 -57 1802 174 3 3 chr9 77960349 77960654 -39901973 + AluJb SINE Alu 1 305 -7 3576 154 51 11 chr9 77961212 77961873 -39900754 - L1MB7 LINE L1 -9 6175 5488 345 287 39 31 chr9 77962777 77962906 -39899721 - MIR SINE MIR 0 262 133 429 324 83 32 chr9 77963176 77963392 -39899235 - MIR SINE MIR -8 254 28 748 56 0 0 chr9 77963525 77963614 -39899013 - 5S rRNA rRNA -31 90 2 361 355 28 7 chr9 77965743 77965884 -39896743 + MIR3 SINE MIR 29 172 -36 195 274 0 185 chr9 77966227 77966362 -39896265 + L3 LINE CR1 20 129 -1448 857 168 0 0 chr9 77966367 77966504 -39896123 + AluJb SINE Alu 170 306 -6 423 260 0 10 chr9 77966541 77966645 -39895982 - HAL1 LINE L1 -2247 260 158 394 189 22 0 chr9 77966651 77966741 -39895886 - L1MC/D LINE L1 -2043 5765 5674 23 0 0 0 chr9 77966798 77966821 -39895806 + AT_rich Low_complexity Low_complexity 1 23 0 192 111 0 0 chr9 77969035 77969071 -39893556 + (T)n Simple_repeat Simple_repeat 1 36 0 680 238 49 11 chr9 77971807 77971992 -39890635 + L1ME1 LINE L1 1629 1820 -4576 1582 216 122 99 chr9 77972000 77972598 -39890029 - MLT1E2 LTR MaLR -10 614 3 2546 243 120 2 chr9 77972654 77973772 -39888855 + L1ME1 LINE L1 1890 3110 -3105 4542 210 116 47 chr9 77973782 77975312 -39887315 + L1M4 LINE L1 3722 5357 -789 1742 213 121 22 chr9 77975429 77975744 -39886883 + L1ME1 LINE L1 5363 5645 -590 1032 126 55 16 chr9 77975744 77975926 -39886701 - MER53 DNA DNA 0 189 1 1742 213 121 22 chr9 77975926 77976163 -39886464 + L1ME1 LINE L1 5645 5970 -265 3186 148 29 69 chr9 77976199 77976850 -39885777 + MER51A LTR ERV1 1 625 -9 481 189 71 16 chr9 77976866 77976993 -39885634 + L1MB8 LINE L1 6042 6175 -3 1792 136 13 13 chr9 77977038 77977340 -39885287 - AluJb SINE Alu -10 302 1 360 324 115 16 chr9 77977881 77978063 -39884564 + L2 LINE L2 3073 3272 0 4751 117 34 3 chr9 77978780 77979482 -39883145 - L1PA16 LINE L1 -9 6157 5434 2327 87 0 0 chr9 77979556 77979845 -39882782 - AluSg SINE Alu -21 289 1 222 283 17 17 chr9 77980043 77980103 -39882524 + L2 LINE L2 3254 3313 0 327 329 115 43 chr9 77980123 77980497 -39882130 - L3 LINE CR1 -47 1530 1130 415 241 35 6 chr9 77981001 77981221 -39881406 + (TA)n Simple_repeat Simple_repeat 1 226 0 1986 95 11 0 chr9 77981345 77981609 -39881018 - AluSx SINE Alu -6 306 40 2060 149 7 0 chr9 77982021 77982323 -39880304 - AluSx SINE Alu -8 304 1 629 259 68 102 chr9 77982406 77983085 -39879542 - HAL1 LINE L1 -1059 1448 793 2660 101 16 16 chr9 77983310 77983685 -39878942 + THE1C LTR MaLR 1 375 0 2316 98 16 0 chr9 77984138 77984443 -39878184 - AluSx SINE Alu -2 310 1 1069 255 136 39 chr9 77984761 77985224 -39877403 + MLT1J LTR MaLR 4 511 0 186 118 0 0 chr9 77985316 77985350 -39877277 + (CATG)n Simple_repeat Simple_repeat 2 35 0 234 62 0 0 chr9 77986290 77986322 -39876305 + (CA)n Simple_repeat Simple_repeat 1 32 0 243 269 255 0 chr9 77986486 77986631 -39875996 - L1MC4a LINE L1 -1709 6099 5918 26 0 0 0 chr9 77986672 77986698 -39875929 + AT_rich Low_complexity Low_complexity 1 26 0 949 217 159 38 chr9 77987034 77987379 -39875248 - MLT2C1 LTR ERVL 0 397 11 208 292 83 42 chr9 77988158 77988278 -39874349 - MIR3 SINE MIR -14 194 70 387 300 157 54 chr9 77989125 77989825 -39872802 + L2 LINE L2 1812 2583 -731 257 243 201 70 chr9 77990134 77990280 -39872347 - MIR SINE MIR -62 146 8 180 347 0 0 chr9 77990725 77990774 -39871853 - L3 LINE CR1 -10 1567 1519 * 230 311 107 10 chr9 77990741 77990844 -39871783 - MIR3 SINE MIR -30 178 66 206 200 0 0 chr9 77991222 77991257 -39871370 + (CTG)n Simple_repeat Simple_repeat 1 35 0 613 239 134 42 chr9 77991277 77991515 -39871112 - MIR SINE MIR 0 262 3 242 266 25 38 chr9 77991550 77991629 -39870998 + L2 LINE L2 3137 3214 -58 235 259 100 63 chr9 77992382 77992427 -39870200 - L1ME4a LINE L1 -38 6083 6041 2352 98 0 10 chr9 77992427 77992733 -39869894 + AluSq SINE Alu 1 303 -10 235 259 100 63 chr9 77992733 77992926 -39869701 - L1ME4a LINE L1 -80 6041 5836 332 143 0 0 chr9 77992928 77992984 -39869643 - Alu SINE Alu -2 299 244 646 266 57 70 chr9 77992988 77993156 -39869471 - L1ME4a LINE L1 -301 5820 5656 875 167 146 5 chr9 77993156 77993348 -39869279 - MER20 DNA MER1_type 0 219 1 646 266 57 70 chr9 77993348 77993510 -39869117 - L1ME4a LINE L1 -465 5656 5494 2241 123 0 0 chr9 77993574 77993884 -39868743 - AluSx SINE Alu -2 310 1 1650 183 3 7 chr9 77994916 77995201 -39867426 + AluJo SINE Alu 8 291 -21 207 204 23 0 chr9 77995222 77995266 -39867361 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 831 237 73 91 chr9 77995356 77995685 -39866942 - MER102b DNA MER1_type -2 339 17 26 64 0 0 chr9 77995930 77995977 -39866650 + AT_rich Low_complexity Low_complexity 1 47 0 2109 129 0 3 chr9 77995977 77996279 -39866348 - AluSx SINE Alu -11 301 1 287 185 0 0 chr9 77996373 77996427 -39866200 - MIR SINE MIR -57 151 98 189 360 90 0 chr9 77996498 77996609 -39866018 + L3 LINE CR1 1415 1535 -42 267 147 250 0 chr9 77996683 77996751 -39865876 - L3 LINE CR1 -188 1389 1305 296 292 52 21 chr9 77996768 77996864 -39865763 - L2 LINE L2 -23 3249 3151 292 319 17 9 chr9 77997185 77997301 -39865326 + LTR16C LTR ERVL 373 489 -2 297 285 146 8 chr9 77997306 77997429 -39865198 - MIR3 SINE MIR -58 150 11 288 53 0 0 chr9 77999020 77999058 -39863569 + (CA)n Simple_repeat Simple_repeat 1 38 0 895 252 119 82 chr9 77999144 77999632 -39862995 - MLT1J LTR MaLR 0 511 6 277 320 10 0 chr9 77999916 78000019 -39862608 + MER103 DNA DNA 4 107 -59 275 330 26 17 chr9 78000207 78000322 -39862305 + MER5A DNA MER1_type 72 187 -2 470 319 27 27 chr9 78000466 78000654 -39861973 - L3 LINE CR1 -754 823 636 591 286 127 0 chr9 78001075 78001295 -39861332 - MIR SINE MIR -14 248 1 263 300 9 45 chr9 78003049 78003159 -39859468 + MIR3 SINE MIR 81 186 -22 1776 153 58 19 chr9 78003206 78003514 -39859113 - 7SLRNA srpRNA srpRNA 0 320 1 272 225 42 14 chr9 78004083 78004154 -39858473 + HAL1 LINE L1 2066 2138 -369 876 254 93 54 chr9 78004424 78004810 -39857817 + MLT1I LTR MaLR 1 401 -8 364 274 193 10 chr9 78004870 78005067 -39857560 + HAL1 LINE L1 2245 2477 -30 600 286 78 20 chr9 78005233 78005579 -39857048 - L1MC4a LINE L1 -1925 5883 5518 202 222 22 0 chr9 78005774 78005819 -39856808 - L2 LINE L2 -1 3312 3267 337 324 83 20 chr9 78006427 78006631 -39855996 - MIR SINE MIR -32 230 14 254 281 95 43 chr9 78008149 78008380 -39854247 + L2 LINE L2 2842 3084 -188 347 196 64 80 chr9 78008593 78008753 -39853874 + MLT1H LTR MaLR 432 549 0 252 0 0 0 chr9 78009523 78009551 -39853076 + (TTA)n Simple_repeat Simple_repeat 3 30 0 1868 194 22 25 chr9 78009588 78009954 -39852673 + MLT1A1 LTR MaLR 1 365 0 405 0 0 0 chr9 78010334 78010379 -39852248 + (TG)n Simple_repeat Simple_repeat 2 46 0 2062 166 100 50 chr9 78010670 78011151 -39851476 + MLT1D LTR MaLR 1 505 0 515 213 100 1 chr9 78011253 78011395 -39851232 + MIR SINE MIR 36 188 -62 251 278 102 37 chr9 78012202 78012319 -39850308 - L1MC4 LINE L1 -91 7951 7843 1754 175 23 67 chr9 78012319 78012708 -39849919 + MLT1A2 LTR MaLR 1 372 -2 251 278 102 37 chr9 78012708 78012835 -39849792 - L1MC4 LINE L1 -199 7843 7691 225 0 0 0 chr9 78013401 78013426 -39849201 + (T)n Simple_repeat Simple_repeat 1 25 0 287 373 0 34 chr9 78013453 78013630 -39848997 + C-rich Low_complexity Low_complexity 5 175 0 244 260 221 0 chr9 78013690 78013767 -39848860 - MIR SINE MIR -12 250 157 413 216 170 13 chr9 78013773 78013926 -39848701 - MLT1L LTR MaLR -7 608 432 633 103 21 10 chr9 78014045 78014142 -39848485 + MER4A LTR ERV1 1 98 -566 1710 111 171 81 chr9 78014142 78014486 -39848141 + MER4A LTR ERV1 261 635 -29 316 283 54 0 chr9 78014881 78014973 -39847654 - L2 LINE L2 0 3272 3176 209 292 14 14 chr9 78015085 78015157 -39847470 - MIR SINE MIR -160 102 31 225 0 0 0 chr9 78015392 78015417 -39847210 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 966 253 68 70 chr9 78015639 78016109 -39846518 + LTR67 LTR ERVL 89 557 0 4111 159 40 62 chr9 78016211 78017075 -39845552 - L1MC3 LINE L1 0 7785 6941 1926 99 0 4 chr9 78017079 78017331 -39845296 + AluSq SINE Alu 37 287 -26 2911 151 4 40 chr9 78017363 78017892 -39844735 - L1MC3 LINE L1 -1054 6731 6222 518 279 90 36 chr9 78019739 78019961 -39842666 + MIR SINE MIR 29 262 0 244 276 43 74 chr9 78019997 78020160 -39842467 + MER103 DNA DNA 8 165 -1 236 270 16 0 chr9 78020233 78020296 -39842331 + HAL1b LINE L1 460 523 -825 28 61 0 0 chr9 78020469 78020518 -39842109 + AT_rich Low_complexity Low_complexity 1 49 0 372 269 12 6 chr9 78020614 78020785 -39841842 + (TA)n Simple_repeat Simple_repeat 2 173 0 10295 166 68 67 chr9 78021190 78021533 -39841094 - L1MA4A LINE L1 -8 6997 6656 2398 89 0 6 chr9 78021533 78021846 -39840781 - AluSx SINE Alu -1 311 1 10295 166 68 67 chr9 78021846 78022135 -39840492 - L1MA4A LINE L1 -349 6656 6369 2159 122 0 10 chr9 78022135 78022446 -39840181 - AluSx SINE Alu -4 308 1 10295 166 68 67 chr9 78022446 78022650 -39839977 - L1MA4A LINE L1 -636 6369 6167 2151 129 7 0 chr9 78022650 78022960 -39839667 - AluSq SINE Alu -1 312 1 10295 166 68 67 chr9 78022960 78024091 -39838536 - L1MA4A LINE L1 -838 6167 5039 845 126 25 0 chr9 78024091 78024210 -39838417 + FLAM_C SINE Alu 1 122 -21 10295 166 68 67 chr9 78024210 78024587 -39838040 - L1MA4A LINE L1 -1966 5039 4664 1865 116 78 22 chr9 78024587 78024906 -39837721 + MER1B DNA MER1_type 1 337 0 10295 166 68 67 chr9 78024906 78026394 -39836233 - L1MA4A LINE L1 -2341 4664 3064 2415 69 0 26 chr9 78026908 78027212 -39835415 + AluY SINE Alu 1 296 -15 12114 179 32 84 chr9 78027312 78030462 -39832165 - L1MA4A LINE L1 -3774 3074 89 21 0 0 0 chr9 78030549 78030570 -39832057 + AT_rich Low_complexity Low_complexity 1 21 0 313 336 23 0 chr9 78032191 78032322 -39830305 + MIR3 SINE MIR 68 201 -7 1703 98 0 9 chr9 78032453 78032678 -39829949 - AluSp SINE Alu -13 300 78 190 302 0 19 chr9 78032725 78032778 -39829849 + MIR SINE MIR 33 84 -178 304 309 100 0 chr9 78033098 78033230 -39829397 + MIR SINE MIR 40 183 -79 320 246 158 36 chr9 78034286 78034454 -39828173 - MIR SINE MIR -2 260 74 204 312 83 18 chr9 78036545 78036654 -39825973 + L2 LINE L2 3150 3265 -7 1108 133 76 18 chr9 78036745 78036982 -39825645 - MER33 DNA MER1_type -87 237 1 702 247 69 22 chr9 78037010 78037241 -39825386 + MIR SINE MIR 11 252 -10 702 281 87 40 chr9 78037577 78038001 -39824626 + L1MC4a LINE L1 5402 5845 -1963 1477 60 5 5 chr9 78038015 78038200 -39824427 + AluSg SINE Alu 1 185 -125 532 47 0 0 chr9 78038200 78038288 -39824339 + AluSg SINE Alu 217 304 0 315 212 147 47 chr9 78038855 78039025 -39823602 + MER5A DNA MER1_type 1 187 -2 21 0 0 0 chr9 78039257 78039278 -39823349 + GC_rich Low_complexity Low_complexity 1 21 0 190 295 0 16 chr9 78040447 78040508 -39822119 + L3 LINE CR1 1077 1136 -441 2288 109 3 0 chr9 78041012 78041316 -39821311 - AluY SINE Alu -6 305 1 208 385 31 47 chr9 78041389 78041581 -39821046 + L2 LINE L2 2972 3160 -112 348 309 148 4 chr9 78041688 78041931 -39820696 + L3 LINE CR1 1188 1465 -112 684 295 99 42 chr9 78042748 78043152 -39819475 - L2 LINE L2 -22 3291 2865 2409 107 0 0 chr9 78044610 78044920 -39817707 + AluSg SINE Alu 1 310 0 310 333 37 15 chr9 78045197 78045332 -39817295 + MIR SINE MIR 48 185 -77 340 268 113 46 chr9 78046329 78046523 -39816104 - MIR SINE MIR 0 262 56 38 39 0 0 chr9 78046674 78046726 -39815901 + AT_rich Low_complexity Low_complexity 1 52 0 1249 157 91 98 chr9 78046950 78047236 -39815391 - AluJo SINE Alu -13 299 16 1435 123 21 0 chr9 78047320 78047555 -39815072 - L1MA2 LINE L1 0 6304 6065 423 179 0 73 chr9 78047679 78047802 -39814825 - L1MC5 LINE L1 -198 7763 7650 555 135 77 0 chr9 78049821 78049925 -39812702 - L1MB3 LINE L1 0 6183 6072 927 158 36 0 chr9 78049981 78050146 -39812481 - L1MB3 LINE L1 -252 5931 5761 329 263 63 11 chr9 78050931 78051026 -39811601 + MIR SINE MIR 46 145 -63 1342 215 55 102 chr9 78051099 78051666 -39810961 - MER34 LTR ERV1 0 542 3 285 219 296 0 chr9 78051718 78051841 -39810786 - MIR SINE MIR -62 146 38 429 315 71 11 chr9 78052438 78052622 -39810005 - MIR3 SINE MIR -1 207 13 269 186 0 0 chr9 78053391 78053434 -39809193 - MER5A DNA MER1_type -1 188 146 389 96 0 0 chr9 78053797 78053845 -39808782 - MSTA LTR MaLR 0 428 381 1976 115 133 71 chr9 78053845 78054237 -39808390 + MSTA LTR MaLR 1 416 -12 652 137 8 60 chr9 78054231 78054348 -39808279 - MSTA LTR MaLR -317 111 1 * 1003 165 128 11 chr9 78054360 78054548 -39808079 - AluJb SINE Alu -102 210 1 1735 200 93 59 chr9 78055015 78055450 -39807177 + MER68 LTR ERV1 1 459 -103 2535 125 28 14 chr9 78055450 78055809 -39806818 + THE1B LTR MaLR 1 364 0 1735 200 93 59 chr9 78055809 78055913 -39806714 + MER68 LTR ERV1 459 558 -4 366 302 43 0 chr9 78056099 78056215 -39806412 - MIR SINE MIR -56 152 32 583 117 39 148 chr9 78056215 78056343 -39806284 + MER81 DNA DNA 1 114 0 317 213 130 122 chr9 78057496 78057726 -39804901 + MIR SINE MIR 16 247 -15 204 313 95 56 chr9 78057769 78057948 -39804679 - L3 LINE CR1 -1 1576 1391 21 71 0 0 chr9 78058569 78058611 -39804016 + AT_rich Low_complexity Low_complexity 1 42 0 1141 149 0 0 chr9 78058863 78059031 -39803596 - AluSg/x SINE Alu -8 304 137 605 281 53 12 chr9 78059085 78059256 -39803371 - MIR3 SINE MIR -14 194 17 7968 34 34 0 chr9 78059543 78060527 -39802100 - L1PA5 LINE L1 -2 6152 5161 799 236 68 53 chr9 78061167 78061528 -39801099 - MLT1A1 LTR MaLR 0 396 3 611 281 76 86 chr9 78061528 78061937 -39800690 - MLT1J LTR MaLR -106 405 1 336 215 28 21 chr9 78062375 78062635 -39799992 + GA-rich Low_complexity Low_complexity 1 261 0 769 233 94 69 chr9 78062873 78063161 -39799466 - L1ME1 LINE L1 -5 6161 5867 682 246 42 117 chr9 78063383 78063716 -39798911 - L1ME3A LINE L1 -88 6082 5775 1646 78 0 9 chr9 78064009 78064226 -39798401 - AluY SINE Alu -14 297 83 7840 18 1 0 chr9 78064451 78065297 -39797330 + L1PA3 LINE L1 5307 6153 -2 27 29 0 0 chr9 78065298 78065332 -39797295 + AT_rich Low_complexity Low_complexity 1 34 0 247 294 39 20 chr9 78065608 78065710 -39796917 - MIR SINE MIR -96 166 63 385 247 9 47 chr9 78066067 78066219 -39796408 - L1MC4 LINE L1 -719 7151 6937 578 242 0 0 chr9 78066226 78066350 -39796277 - L1MC4 LINE L1 -1073 6969 6846 412 280 87 99 chr9 78068033 78068897 -39793730 - L1M4 LINE L1 -1870 4276 3424 1023 220 9 45 chr9 78068917 78069140 -39793487 + MER58A DNA MER1_type 2 216 -8 2121 104 0 27 chr9 78069140 78069437 -39793190 + AluSg SINE Alu 1 289 -21 1020 101 101 6 chr9 78070096 78070254 -39792373 + L1PA15 LINE L1 5992 6164 -1 2689 126 43 24 chr9 78070266 78070305 -39792322 - MSTA LTR MaLR 0 428 391 2336 81 0 0 chr9 78070305 78070629 -39791998 + AluY SINE Alu 2 325 0 2689 126 43 24 chr9 78070629 78071008 -39791619 - MSTA LTR MaLR -37 391 1 204 185 0 0 chr9 78071035 78071089 -39791538 + (TG)n Simple_repeat Simple_repeat 1 54 0 257 267 50 25 chr9 78071306 78071426 -39791201 - MIR3 SINE MIR -49 159 37 220 376 0 0 chr9 78072022 78072107 -39790520 + L2 LINE L2 2889 2973 -299 1181 224 37 10 chr9 78072157 78072170 -39790457 - L1M4 LINE L1 -3388 2758 2747 2539 156 31 11 chr9 78072170 78072624 -39790003 - L1MB3 LINE L1 -7 6176 5714 1181 224 37 10 chr9 78072624 78072904 -39789723 - L1M4 LINE L1 -3399 2747 2457 315 309 106 8 chr9 78073059 78073182 -39789445 + L2 LINE L2 3171 3305 -8 569 244 29 38 chr9 78073322 78073515 -39789112 - MIR SINE MIR -64 144 3 466 283 57 53 chr9 78073854 78074119 -39788508 - L3 LINE CR1 -202 1375 1110 248 89 0 22 chr9 78074237 78074282 -39788345 + (GGA)n Simple_repeat Simple_repeat 3 46 0 1989 123 16 44 chr9 78074759 78075077 -39787550 + AluSx SINE Alu 1 309 -3 363 303 53 13 chr9 78075204 78075356 -39787271 + MIR3 SINE MIR 30 187 -21 216 316 34 17 chr9 78076074 78076191 -39786436 + MIR SINE MIR 18 136 -72 285 313 141 0 chr9 78076490 78076618 -39786009 + MIR3 SINE MIR 42 187 -21 629 226 28 83 chr9 78078059 78078240 -39784387 - MER58A DNA MER1_type 0 224 54 1459 146 179 0 chr9 78078246 78078492 -39784135 - AluJb SINE Alu -11 291 2 379 217 0 0 chr9 78078492 78078561 -39784066 - MER58A DNA MER1_type -36 71 3 262 258 0 32 chr9 78078562 78078624 -39784003 + L2 LINE L2 3213 3272 0 2303 81 0 47 chr9 78079201 78079521 -39783106 + AluSg SINE Alu 1 305 -5 201 313 69 61 chr9 78079950 78080035 -39782592 - L2 LINE L2 0 3272 3189 2304 104 0 10 chr9 78080035 78080333 -39782294 + AluSx SINE Alu 1 295 -17 2363 94 0 0 chr9 78080336 78080635 -39781992 + AluSg SINE Alu 4 302 -8 201 313 69 61 chr9 78080635 78080676 -39781951 - L2 LINE L2 -84 3188 3141 200 343 264 21 chr9 78080795 78080935 -39781692 + L3 LINE CR1 1391 1564 -13 433 263 92 13 chr9 78081071 78081223 -39781404 + MIR3 SINE MIR 22 185 -23 1008 125 4 26 chr9 78081262 78081460 -39781167 - L1MB8 LINE L1 -2 6160 5978 * 1967 198 50 20 chr9 78081432 78081883 -39780744 - L1MB8 LINE L1 -122 6056 5594 260 351 57 81 chr9 78081886 78082247 -39780380 + L2 LINE L2 2848 3199 -73 2485 58 0 3 chr9 78082247 78082542 -39780085 - AluSq SINE Alu -19 294 1 260 351 57 81 chr9 78082542 78082601 -39780026 + L2 LINE L2 3199 3258 -14 533 322 103 0 chr9 78083065 78083338 -39779289 - L3 LINE CR1 -90 1487 1187 21 0 0 0 chr9 78083354 78083375 -39779252 + AT_rich Low_complexity Low_complexity 1 21 0 703 325 39 4 chr9 78083463 78083694 -39778933 - MIR SINE MIR -15 247 9 502 294 115 59 chr9 78083960 78084283 -39778344 + L2 LINE L2 2897 3237 -35 913 225 32 0 chr9 78084875 78085062 -39777565 + MIR SINE MIR 2 194 -68 330 309 37 31 chr9 78085123 78085285 -39777342 + L2 LINE L2 3146 3308 -5 848 273 82 40 chr9 78085310 78085530 -39777097 + L1ME4a LINE L1 5407 5616 -505 2091 114 4 0 chr9 78085530 78085841 -39776786 - AluSx SINE Alu 0 313 2 848 273 82 40 chr9 78085841 78086100 -39776527 + L1ME4a LINE L1 5616 5913 -208 458 234 11 0 chr9 78086100 78086194 -39776433 + MIR SINE MIR 94 188 -74 428 200 96 22 chr9 78086240 78086375 -39776252 + L1ME4a LINE L1 5908 6052 -69 252 274 16 0 chr9 78086384 78086446 -39776181 + MIR SINE MIR 195 257 -5 1788 188 0 16 chr9 78086457 78086771 -39775856 - AluJb SINE Alu -3 309 1 239 250 67 0 chr9 78087600 78087704 -39774923 + L1MC4a LINE L1 5221 5331 -815 732 285 80 51 chr9 78087790 78088201 -39774426 + L1ME LINE L1 5268 5690 -431 421 267 97 15 chr9 78088246 78088441 -39774186 + L1MC4a LINE L1 5648 5858 -1950 259 327 122 13 chr9 78088977 78089133 -39773494 - L3 LINE CR1 -174 1403 1231 265 339 12 55 chr9 78089141 78089306 -39773321 + L3 LINE CR1 1418 1575 -2 2052 102 3 33 chr9 78090031 78090334 -39772293 - AluSx SINE Alu -18 294 1 1297 313 117 10 chr9 78090456 78091292 -39771335 + L2 LINE L2 1537 2462 -852 2527 51 3 0 chr9 78091292 78091587 -39771040 + L1PA6 LINE L1 5855 6150 -4 236 382 0 0 chr9 78091739 78091841 -39770786 + L3 LINE CR1 1403 1504 -73 441 261 130 25 chr9 78092034 78092195 -39770432 - MIR3 SINE MIR -24 184 7 2545 71 0 0 chr9 78093789 78094100 -39768527 + AluY SINE Alu 1 311 0 213 39 0 0 chr9 78094507 78094533 -39768094 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 372 305 52 63 chr9 78094703 78094972 -39767655 + HAL1 LINE L1 1090 1355 -1152 245 62 0 0 chr9 78095105 78095137 -39767490 + MLT1F LTR MaLR 511 542 0 206 79 53 0 chr9 78096745 78096783 -39765844 + A-rich Low_complexity Low_complexity 2 41 0 2003 195 22 6 chr9 78096803 78097162 -39765465 + MLT1A1 LTR MaLR 1 365 0 25 0 0 0 chr9 78097745 78097770 -39764857 + AT_rich Low_complexity Low_complexity 1 25 0 216 0 0 0 chr9 78097770 78097794 -39764833 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2097 104 22 4 chr9 78097796 78098074 -39764553 - AluSx SINE Alu -29 283 1 956 280 68 29 chr9 78098212 78098623 -39764004 - L1MC/D LINE L1 -2088 5720 5294 441 326 68 39 chr9 78098644 78099082 -39763545 - L1MC/D LINE L1 -913 5233 4783 1607 193 0 40 chr9 78099164 78099465 -39763162 - AluJo SINE Alu -23 289 1 2459 58 0 13 chr9 78099562 78099871 -39762756 - AluY SINE Alu -6 305 1 240 86 0 0 chr9 78099871 78099906 -39762721 + (TCCCC)n Simple_repeat Simple_repeat 4 38 0 729 175 63 0 chr9 78099927 78100053 -39762574 - FRAM SINE Alu -1 175 42 301 351 68 24 chr9 78100053 78100349 -39762278 - L1MC/D LINE L1 -1601 4545 4237 413 324 126 40 chr9 78100652 78101176 -39761451 - L1MC/D LINE L1 -2382 3764 3196 1151 150 98 0 chr9 78101176 78101369 -39761258 + L1PA16 LINE L1 5946 6157 -9 226 167 0 0 chr9 78101375 78101417 -39761210 + L1MDa LINE L1 1295 1336 -5204 381 311 77 6 chr9 78101460 78101643 -39760984 - L1MC/D LINE L1 -2936 3210 3015 922 124 4 184 chr9 78101647 78101881 -39760746 + 7SK RNA RNA 1 192 -1 524 237 206 36 chr9 78101902 78102273 -39760354 + L1MC4 LINE L1 7043 7648 -347 31 26 0 0 chr9 78102337 78102375 -39760252 + AT_rich Low_complexity Low_complexity 1 38 0 2027 94 14 21 chr9 78102387 78102673 -39759954 - AluSg SINE Alu -26 284 1 1790 185 152 87 chr9 78103488 78104008 -39758619 - MLT2B3 LTR ERVL 0 554 1 204 197 70 0 chr9 78104070 78104141 -39758486 + (TA)n Simple_repeat Simple_repeat 2 77 0 267 313 0 10 chr9 78104287 78104386 -39758241 - HAL1 LINE L1 -788 1719 1622 1805 129 47 0 chr9 78104899 78105200 -39757427 - AluSx SINE Alu 0 312 1 507 17 0 0 chr9 78105832 78105892 -39756735 + (TG)n Simple_repeat Simple_repeat 1 60 0 1488 258 86 58 chr9 78106174 78106817 -39755810 - MLT2F LTR ERVL -2 661 1 711 248 101 13 chr9 78107358 78107596 -39755031 + MIR SINE MIR 3 261 -1 3342 77 4 60 chr9 78107797 78107873 -39754754 - MLT2A1 LTR ERVL 0 444 365 186 118 0 0 chr9 78107873 78107907 -39754720 + (TA)n Simple_repeat Simple_repeat 2 35 0 3342 77 4 60 chr9 78107907 78108300 -39754327 - MLT2A1 LTR ERVL -79 365 1 544 305 25 30 chr9 78108413 78108610 -39754017 - L3 LINE CR1 -7 1570 1375 285 271 170 33 chr9 78109621 78109756 -39752871 - MIR SINE MIR -65 143 45 329 335 29 35 chr9 78110572 78110742 -39751885 - MIR3 SINE MIR -7 201 33 232 203 149 14 chr9 78110980 78111012 -39751615 + L1MA9 LINE L1 6120 6146 -166 342 0 0 0 chr9 78111012 78111050 -39751577 + (CA)n Simple_repeat Simple_repeat 1 38 0 232 203 149 14 chr9 78111050 78111091 -39751536 + L1MA9 LINE L1 6146 6203 -109 239 266 21 75 chr9 78111101 78111195 -39751432 - MIR SINE MIR -71 191 103 1415 151 5 0 chr9 78112175 78112393 -39750234 - AluJb SINE Alu -7 305 87 421 295 22 22 chr9 78112394 78112533 -39750094 - L2 LINE L2 0 3272 3134 521 252 59 70 chr9 78112552 78112838 -39749789 + MLT1J LTR MaLR 30 312 -199 945 139 0 14 chr9 78113375 78113519 -39749108 - FRAM SINE Alu -14 162 21 429 20 0 0 chr9 78113749 78113799 -39748828 + (TG)n Simple_repeat Simple_repeat 2 51 0 662 288 105 4 chr9 78114642 78114871 -39747756 - MIR SINE MIR 0 262 11 198 281 53 0 chr9 78115015 78115072 -39747555 + L2 LINE L2 3194 3253 -19 260 249 137 46 chr9 78115100 78115246 -39747381 - MIR SINE MIR -65 143 19 250 349 60 60 chr9 78116274 78116555 -39746072 + L2 LINE L2 2898 3178 -94 230 260 154 57 chr9 78117015 78117138 -39745489 + MIR SINE MIR 58 192 -70 441 196 54 18 chr9 78117173 78117285 -39745342 - L1ME3 LINE L1 -2 6160 6045 373 298 35 0 chr9 78119188 78119302 -39743325 + MIR SINE MIR 34 151 -111 4571 117 19 2 chr9 78119536 78120160 -39742467 + MER41B LTR ERV1 1 635 0 420 289 19 90 chr9 78120263 78120474 -39742153 - MIR SINE MIR -34 228 33 423 237 29 22 chr9 78120922 78121061 -39741566 + MIR3 SINE MIR 12 151 -57 311 336 9 0 chr9 78121074 78121181 -39741446 + MER117 DNA MER1_type 6 113 -84 482 279 260 14 chr9 78121195 78121557 -39741070 - L2 LINE L2 0 3313 2863 253 239 0 83 chr9 78121568 78121677 -39740950 + MER117 DNA MER1_type 98 197 0 321 321 27 9 chr9 78121984 78122096 -39740531 + MIR SINE MIR 78 191 -71 25 0 0 0 chr9 78122132 78122157 -39740470 + AT_rich Low_complexity Low_complexity 1 25 0 514 271 117 31 chr9 78122277 78122602 -39740025 + L1ME3A LINE L1 5545 5897 -273 914 128 0 8 chr9 78122606 78122731 -39739896 + FLAM_C SINE Alu 1 124 -9 274 254 30 18 chr9 78124523 78124692 -39737935 + (TA)n Simple_repeat Simple_repeat 1 171 0 640 233 138 5 chr9 78124694 78124883 -39737744 + L1ME3A LINE L1 5944 6157 -13 250 270 146 11 chr9 78124922 78125100 -39737527 + L1ME4a LINE L1 5683 5884 -237 1887 128 30 7 chr9 78125134 78125438 -39737189 + AluJo SINE Alu 1 311 -1 5391 140 45 15 chr9 78125644 78126518 -39736109 + MER4D LTR ERV1 1 900 -3 252 157 0 0 chr9 78127050 78127101 -39735526 + L1ME4a LINE L1 6070 6120 -1 368 186 264 8 chr9 78127150 78127279 -39735348 - MER5A DNA MER1_type -21 168 7 283 300 45 0 chr9 78127668 78127778 -39734849 + L3 LINE CR1 1424 1538 -39 282 303 58 45 chr9 78128065 78128220 -39734407 - L3 LINE CR1 -99 1478 1322 206 274 48 0 chr9 78128301 78128363 -39734264 - MER5B DNA MER1_type -45 133 69 349 276 72 54 chr9 78128821 78129100 -39733527 + L1ME4a LINE L1 5601 5884 -237 27 0 0 0 chr9 78129183 78129210 -39733417 + AT_rich Low_complexity Low_complexity 1 27 0 200 346 46 46 chr9 78129351 78129504 -39733123 - L3 LINE CR1 -25 1552 1400 458 304 30 36 chr9 78130021 78130189 -39732438 + MIR SINE MIR 20 186 -76 496 285 49 61 chr9 78130633 78130959 -39731668 - L1ME LINE L1 -335 5786 5465 250 279 123 29 chr9 78130986 78131092 -39731535 - L1ME LINE L1 -743 5403 5308 2201 104 0 19 chr9 78131092 78131408 -39731219 - AluSg SINE Alu 0 310 1 250 279 123 29 chr9 78131408 78131545 -39731082 - L1ME LINE L1 -838 5308 5137 1251 27 0 32 chr9 78131557 78131743 -39730884 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 299 150 17 0 chr9 78131743 78131803 -39730824 + CT-rich Low_complexity Low_complexity 4 64 0 2015 149 7 0 chr9 78131813 78132121 -39730506 - AluSx SINE Alu -2 310 1 462 327 48 27 chr9 78132205 78132535 -39730092 - L1ME LINE L1 -1086 5060 4724 742 282 110 43 chr9 78132561 78132912 -39729715 - L1ME LINE L1 -1527 4619 4293 2542 59 10 0 chr9 78132912 78133218 -39729409 - AluY SINE Alu -2 309 1 742 282 110 43 chr9 78133218 78133711 -39728916 - L1ME LINE L1 -1853 4293 3718 449 335 149 26 chr9 78133752 78134182 -39728445 + L2 LINE L2 2828 3310 -3 413 275 28 28 chr9 78134316 78134458 -39728169 + MIR SINE MIR 121 262 0 211 221 23 81 chr9 78134490 78134576 -39728051 + MIR SINE MIR 108 188 -74 655 239 26 114 chr9 78134687 78134951 -39727676 + MIR SINE MIR 22 262 0 511 284 16 0 chr9 78135267 78135394 -39727233 - MIR SINE MIR -113 149 21 826 152 27 38 chr9 78135754 78135953 -39726674 - MER6 DNA MER2_type 0 865 -62 936 267 153 19 chr9 78135986 78136373 -39726254 + MLT1J2 LTR MaLR 1 400 -9 220 231 36 71 chr9 78136544 78136658 -39725969 - MIR SINE MIR -77 131 18 411 273 130 12 chr9 78137104 78137357 -39725270 + L1ME4a LINE L1 5836 6118 -3 21 0 0 0 chr9 78137394 78137415 -39725212 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr9 78137486 78137524 -39725103 + AT_rich Low_complexity Low_complexity 1 38 0 1885 128 40 0 chr9 78138157 78138431 -39724196 - AluSx SINE Alu -27 285 1 1874 186 50 43 chr9 78138937 78139379 -39723248 - MLT1D LTR MaLR 0 505 61 555 196 65 0 chr9 78141768 78141875 -39720752 + MER81 DNA DNA 1 114 0 467 269 63 114 chr9 78142046 78142503 -39720124 - L2 LINE L2 0 3313 2880 2043 192 34 3 chr9 78143234 78143588 -39719039 - MLT1A1 LTR MaLR 0 365 1 195 303 101 0 chr9 78144415 78144514 -39718113 - MIR SINE MIR -36 226 118 233 313 216 31 chr9 78144875 78145102 -39717525 + L3 LINE CR1 541 809 -768 1042 106 0 0 chr9 78145725 78145857 -39716770 - FLAM_C SINE Alu 0 133 2 224 189 95 33 chr9 78145995 78146060 -39716567 + MIR SINE MIR 16 83 -133 186 189 0 0 chr9 78146174 78146211 -39716416 + (TTA)n Simple_repeat Simple_repeat 3 39 0 2262 117 0 0 chr9 78146743 78147043 -39715584 + AluSx SINE Alu 1 300 -12 21 57 0 0 chr9 78147115 78147150 -39715477 + AT_rich Low_complexity Low_complexity 1 35 0 277 310 85 47 chr9 78147594 78147723 -39714904 + MIR SINE MIR 15 148 -114 1815 137 60 18 chr9 78147874 78148159 -39714468 - AluSx SINE Alu -15 297 1 2070 113 0 31 chr9 78148169 78148487 -39714140 - AluSg SINE Alu -2 308 1 235 315 5 17 chr9 78148533 78148623 -39714004 - MIR SINE MIR -113 95 6 2756 234 54 26 chr9 78148822 78149487 -39713140 + L1ME3A LINE L1 4487 5188 -974 2058 119 3 3 chr9 78149487 78149805 -39712822 + AluSp SINE Alu 1 318 0 2756 234 54 26 chr9 78149805 78150184 -39712443 + L1ME3A LINE L1 5188 5555 -607 1447 198 130 112 chr9 78150266 78150858 -39711769 + L1ME3A LINE L1 5551 6153 -17 417 130 0 130 chr9 78152003 78152095 -39710532 + MADE1 DNA Mariner 1 80 0 394 336 146 8 chr9 78152138 78152391 -39710236 + L3 LINE CR1 985 1272 -305 285 258 75 67 chr9 78152989 78153109 -39709518 - L2 LINE L2 0 3313 3193 332 111 95 0 chr9 78153442 78153505 -39709122 - MER53 DNA DNA -84 105 37 369 260 139 33 chr9 78154498 78154841 -39707786 + L3 LINE CR1 1147 1573 -4 182 286 0 20 chr9 78155011 78155060 -39707567 + L2 LINE L2 3220 3267 -5 392 275 12 12 chr9 78155705 78155876 -39706751 + (TGGA)n Simple_repeat Simple_repeat 1 171 0 245 289 33 13 chr9 78156104 78156256 -39706371 + (TGGA)n Simple_repeat Simple_repeat 1 155 0 303 324 76 0 chr9 78156907 78157012 -39705615 + MIR3 SINE MIR 94 206 -2 186 289 121 60 chr9 78157367 78157450 -39705177 + MIR SINE MIR 109 196 -66 2080 93 4 0 chr9 78157617 78157921 -39704706 - AluSc SINE Alu 0 305 1 1376 136 25 51 chr9 78158408 78158594 -39704033 + MER30 DNA MER1_type 1 181 -49 2371 55 0 13 chr9 78158594 78158902 -39703725 + AluY SINE Alu 1 304 -7 1376 136 25 51 chr9 78158902 78158951 -39703676 + MER30 DNA MER1_type 181 230 0 622 224 40 0 chr9 78160771 78160896 -39701731 - MIR SINE MIR -84 178 49 2269 102 0 6 chr9 78160903 78161216 -39701411 + AluSq SINE Alu 1 311 -2 1726 164 17 0 chr9 78161266 78161558 -39701069 + AluJb SINE Alu 1 297 -15 914 90 0 0 chr9 78162320 78162442 -39700185 - AluSq SINE Alu -13 300 179 664 94 0 0 chr9 78162442 78162527 -39700100 - AluSq SINE Alu -227 86 2 480 307 163 29 chr9 78163278 78163605 -39699022 + L2 LINE L2 2887 3263 -9 186 264 57 0 chr9 78163773 78163826 -39698801 - L2 LINE L2 -45 3227 3172 415 321 50 19 chr9 78164018 78164177 -39698450 + MIR3 SINE MIR 17 180 -28 218 196 0 0 chr9 78165016 78165062 -39697565 - MIR SINE MIR -64 144 99 456 303 173 10 chr9 78165063 78165271 -39697356 - L3 LINE CR1 -3 1574 1333 1694 161 0 0 chr9 78165684 78165951 -39696676 - AluSx SINE Alu -45 267 1 355 335 91 6 chr9 78167629 78167805 -39694822 - MER117 DNA MER1_type 0 197 7 189 225 0 0 chr9 78170084 78170124 -39692503 - MIR SINE MIR -171 91 52 222 239 120 45 chr9 78171044 78171134 -39691493 + MIR SINE MIR 63 157 -63 717 249 73 0 chr9 78171160 78171337 -39691290 + MER58A DNA MER1_type 35 224 0 536 277 136 14 chr9 78171429 78171642 -39690985 + LTR16C LTR ERVL 253 491 0 580 305 69 17 chr9 78172363 78172596 -39690031 - MIR SINE MIR 0 262 18 2561 182 13 9 chr9 78172612 78173067 -39689560 + L1ME LINE L1 5331 5787 -379 1031 194 37 28 chr9 78173724 78173941 -39688686 - MER20 DNA MER1_type 0 219 1 47 0 0 0 chr9 78174976 78175023 -39687604 + AT_rich Low_complexity Low_complexity 1 47 0 219 67 101 22 chr9 78175023 78175112 -39687515 + (TATAA)n Simple_repeat Simple_repeat 5 100 0 29 0 0 0 chr9 78175112 78175141 -39687486 + AT_rich Low_complexity Low_complexity 1 29 0 328 248 44 9 chr9 78175652 78175765 -39686862 - L1ME4a LINE L1 -7 6114 5998 874 258 25 28 chr9 78175865 78176148 -39686479 - L1ME3 LINE L1 -9 6153 5872 237 65 0 0 chr9 78176231 78176262 -39686365 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 422 268 0 56 chr9 78178285 78178427 -39684200 + L3 LINE CR1 625 758 -819 283 197 0 30 chr9 78178530 78178592 -39684035 + MER20 DNA MER1_type 90 149 -70 610 204 19 38 chr9 78178592 78178749 -39683878 - MER20 DNA MER1_type 0 219 66 518 341 65 55 chr9 78178770 78179204 -39683423 + L2 LINE L2 2816 3253 -19 306 0 0 0 chr9 78179906 78179940 -39682687 + (TG)n Simple_repeat Simple_repeat 2 35 0 484 314 178 11 chr9 78180014 78180301 -39682326 - L3 LINE CR1 -111 1466 1132 265 331 113 65 chr9 78180579 78180854 -39681773 + L3 LINE CR1 1285 1572 -5 378 0 0 0 chr9 78180877 78180919 -39681708 + (TG)n Simple_repeat Simple_repeat 2 43 0 373 207 0 0 chr9 78181536 78181594 -39681033 - L3 LINE CR1 -130 1447 1390 506 248 59 7 chr9 78182189 78182342 -39680285 + MIR SINE MIR 23 183 -79 695 180 7 40 chr9 78182499 78182649 -39679978 - LTR16A1 LTR ERVL -1 456 312 923 176 21 21 chr9 78182658 78182846 -39679781 - MER53 DNA DNA -1 188 1 601 214 33 150 chr9 78182939 78183298 -39679329 - LTR16A1 LTR ERVL -140 317 1 240 241 0 0 chr9 78184325 78184379 -39678248 + MIR SINE MIR 67 120 -88 346 289 61 0 chr9 78185182 78185296 -39677331 + MIR SINE MIR 23 143 -119 486 0 0 0 chr9 78185586 78185640 -39676987 + (CA)n Simple_repeat Simple_repeat 2 55 0 228 256 12 37 chr9 78185911 78185993 -39676634 + GA-rich Low_complexity Low_complexity 2 81 0 207 0 0 0 chr9 78186637 78186660 -39675967 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 232 247 33 107 chr9 78187627 78187777 -39674850 + L2 LINE L2 2918 3056 -216 364 301 53 15 chr9 78187946 78188079 -39674548 + L2 LINE L2 3102 3239 -33 1402 203 82 28 chr9 78188113 78188468 -39674159 + MLT1A2 LTR MaLR 1 374 0 414 325 68 0 chr9 78188579 78188742 -39673885 + MIR SINE MIR 19 192 -70 250 306 77 8 chr9 78189287 78189420 -39673207 + MIR SINE MIR 17 150 -68 210 335 106 22 chr9 78190026 78190205 -39672422 + MIR SINE MIR 20 213 -49 952 234 126 65 chr9 78190587 78191001 -39671626 + LTR16B LTR ERVL 1 439 -25 331 320 26 11 chr9 78191045 78191221 -39671406 - MIR3 SINE MIR -76 186 1 * 455 269 20 82 chr9 78191221 78191421 -39671206 - MIR3 SINE MIR -47 215 30 770 244 5 0 chr9 78192184 78192352 -39670275 + MIR SINE MIR 21 191 -67 527 273 52 0 chr9 78192856 78193010 -39669617 - MER117 DNA MER1_type -32 165 4 474 234 129 0 chr9 78193044 78193168 -39669459 + MIR3 SINE MIR 54 193 -15 375 324 15 0 chr9 78193347 78193483 -39669144 - MIR3 SINE MIR 0 208 71 213 235 111 0 chr9 78193696 78193768 -39668859 + MIR3 SINE MIR 85 165 -43 276 322 17 75 chr9 78193768 78193942 -39668685 - MER5B DNA MER1_type 0 178 15 1333 208 140 25 chr9 78193981 78194375 -39668252 + MLT1D LTR MaLR 27 465 -40 326 344 89 30 chr9 78194371 78194673 -39667954 + LTR67 LTR ERVL 142 461 -96 * 2277 74 10 16 chr9 78195082 78195394 -39667233 + AluSx SINE Alu 1 310 -2 241 269 62 92 chr9 78195697 78195827 -39666800 + MIR3 SINE MIR 2 127 -81 2575 193 49 75 chr9 78195871 78196520 -39666107 + MER82 DNA MER2_type 11 642 -11 22 0 0 0 chr9 78196527 78196549 -39666078 + AT_rich Low_complexity Low_complexity 1 22 0 2371 162 28 23 chr9 78196549 78196981 -39665646 + Tigger2a DNA MER2_type 1 434 0 2111 116 3 0 chr9 78197557 78197858 -39664769 - AluSq SINE Alu -11 302 1 215 310 14 14 chr9 78198183 78198254 -39664373 - L2 LINE L2 0 3272 3202 730 235 132 53 chr9 78198301 78198544 -39664083 + MIR SINE MIR 1 262 0 683 300 73 12 chr9 78198742 78198989 -39663638 - MIR SINE MIR 0 262 1 346 329 279 6 chr9 78199594 78200086 -39662541 - L3 LINE CR1 -77 1500 875 1409 217 24 68 chr9 78200318 78200701 -39661926 + MLT1A2 LTR MaLR 1 366 -8 541 259 65 29 chr9 78201276 78201446 -39661181 + MIR SINE MIR 51 226 -36 217 304 139 0 chr9 78202795 78202910 -39659717 - L2 LINE L2 -1862 1452 1322 222 37 0 0 chr9 78203240 78203267 -39659360 + (TTTTC)n Simple_repeat Simple_repeat 3 29 0 249 196 0 0 chr9 78204427 78204473 -39658154 - L2 LINE L2 0 3313 3268 2061 142 3 3 chr9 78204642 78204944 -39657683 + AluSg SINE Alu 1 302 -8 223 364 0 0 chr9 78205392 78205480 -39657147 - MIR3 SINE MIR -9 199 112 2238 123 0 7 chr9 78205502 78205812 -39656815 + AluSg1 SINE Alu 1 308 -1 468 51 0 0 chr9 78205836 78205895 -39656732 + (TTCC)n Simple_repeat Simple_repeat 3 61 0 1801 148 53 0 chr9 78205898 78206181 -39656446 - AluJb SINE Alu -14 298 1 317 349 34 7 chr9 78206347 78206493 -39656134 - L2 LINE L2 0 3272 3123 822 287 5 5 chr9 78206531 78206754 -39655873 - MIR SINE MIR -1 261 39 593 146 0 0 chr9 78206794 78206883 -39655744 - AluJ/FLAM SINE Alu -215 97 9 1475 279 61 51 chr9 78207590 78207736 -39654891 - L2 LINE L2 0 3313 3170 1343 183 5 5 chr9 78207736 78207955 -39654672 + MER58A DNA MER1_type 2 220 -4 1475 279 61 51 chr9 78207955 78208223 -39654404 - L2 LINE L2 -143 3170 2906 1860 160 7 4 chr9 78208223 78208542 -39654085 + AluJb SINE Alu 1 320 0 1475 279 61 51 chr9 78208542 78209093 -39653534 - L2 LINE L2 -407 2906 2321 220 259 0 35 chr9 78209501 78209559 -39653068 + L2 LINE L2 3179 3234 -38 760 299 66 19 chr9 78209905 78210282 -39652345 - MLT1I LTR MaLR -2 448 3 232 222 0 0 chr9 78211536 78211581 -39651046 - MIR SINE MIR -140 122 78 459 251 170 55 chr9 78211586 78211857 -39650770 - MLT1L LTR MaLR -4 611 310 24 0 0 0 chr9 78211953 78211977 -39650650 + AT_rich Low_complexity Low_complexity 1 24 0 1982 134 0 52 chr9 78212231 78212560 -39650067 + AluSx SINE Alu 1 312 0 22 0 0 0 chr9 78212621 78212643 -39649984 + AT_rich Low_complexity Low_complexity 1 22 0 336 283 42 0 chr9 78213033 78213153 -39649474 - MIR SINE MIR -61 201 77 1538 171 119 0 chr9 78213156 78213449 -39649178 + MLT1D LTR MaLR 4 331 -174 6616 131 9 11 chr9 78213557 78214535 -39648092 + MER83-int LTR ERV1 3306 4281 -4 2290 103 70 3 chr9 78214536 78214866 -39647761 + MER83 LTR ERV1 1 352 -96 2179 224 20 29 chr9 78214981 78215922 -39646705 + Tigger5 DNA MER2_type 396 1292 -1031 758 192 0 0 chr9 78215940 78216065 -39646562 - LTR69 LTR ERVL -56 532 408 1747 198 14 11 chr9 78216250 78216614 -39646013 + MLT1A1 LTR MaLR 1 365 0 1325 228 74 63 chr9 78216614 78217093 -39645534 + L1M4b LINE L1 393 950 -5909 275 246 0 0 chr9 78217113 78217170 -39645457 + L1M4b LINE L1 5 61 -6798 393 301 129 21 chr9 78217522 78217808 -39644819 + L3 LINE CR1 1178 1494 -83 203 182 45 0 chr9 78218385 78218429 -39644198 + L2 LINE L2 3268 3313 0 4026 139 20 4 chr9 78218596 78219150 -39643477 + L1M4 LINE L1 4071 4640 -1506 1623 155 0 88 chr9 78219150 78219493 -39643134 + AluSx SINE Alu 10 312 0 4026 139 20 4 chr9 78219493 78219638 -39642989 + L1M4 LINE L1 4640 4781 -1365 224 224 0 59 chr9 78220911 78220996 -39641631 + GA-rich Low_complexity Low_complexity 1 80 0 204 304 0 0 chr9 78221311 78221380 -39641247 + A-rich Low_complexity Low_complexity 1 69 0 2161 69 0 0 chr9 78221772 78222032 -39640595 + AluY SINE Alu 42 301 -10 817 216 0 20 chr9 78222032 78222185 -39640442 - FRAM SINE Alu -34 142 1 3591 48 0 2 chr9 78222297 78222716 -39639911 - HERVK11 LTR ERVK -1560 6393 5976 3891 64 12 13 chr9 78222716 78223327 -39639300 - MER11A LTR ERVK -554 682 1 756 183 0 8 chr9 78223405 78223536 -39639091 - FRAM SINE Alu -21 155 26 1358 170 89 7 chr9 78223536 78223818 -39638809 + L1M4 LINE L1 5256 5560 -614 548 155 0 0 chr9 78223918 78224002 -39638625 - AluJ/FLAM SINE Alu -227 85 2 411 253 0 0 chr9 78224004 78224083 -39638544 - Tigger7 DNA MER2_type -612 93 15 306 291 32 0 chr9 78224539 78224666 -39637961 + MIR SINE MIR 38 167 -62 356 83 0 0 chr9 78225110 78225158 -39637469 + Alu SINE Alu 1 48 -254 13203 45 76 5 chr9 78225258 78226950 -39635677 - L1P LINE L1 -3906 2240 428 232 179 26 0 chr9 78227050 78227089 -39635538 - Charlie3 DNA MER1_type -2640 70 31 1023 173 47 28 chr9 78227091 78227345 -39635282 + MER63B DNA MER1_type 42 300 -136 1102 198 103 38 chr9 78227346 78227665 -39634962 - L1MB8 LINE L1 -6 6172 5833 10363 32 1 0 chr9 78227680 78228920 -39633707 - L1MB8 LINE L1 -745 5401 4188 1383 225 52 15 chr9 78229022 78229596 -39633031 - L1ME LINE L1 -490 5674 5079 2101 275 67 27 chr9 78229599 78230516 -39632111 - L1ME LINE L1 -1198 4948 3996 518 283 50 18 chr9 78230495 78230714 -39631913 - L1ME LINE L1 -3653 2493 2268 * 667 139 0 10 chr9 78232355 78232456 -39630171 + MLT1B LTR MaLR 291 390 0 238 272 214 23 chr9 78232532 78232870 -39629757 - L2 LINE L2 -110 3203 2756 231 53 0 53 chr9 78232897 78232935 -39629692 + L2 LINE L2 2757 2792 -522 286 312 11 0 chr9 78233658 78233751 -39628876 - L2 LINE L2 -34 3279 3186 577 168 24 32 chr9 78233958 78234083 -39628544 - MER96B DNA MER1_type? -103 314 191 278 156 22 0 chr9 78234230 78234275 -39628352 + MER77 LTR ERV1 1 46 -559 300 148 74 0 chr9 78234375 78234429 -39628198 + MLT1D LTR MaLR 448 505 0 420 314 76 55 chr9 78234711 78235399 -39627228 - L2 LINE L2 -800 2514 1813 1381 249 48 66 chr9 78235873 78236035 -39626592 + LTR16C LTR ERVL 2 165 -326 3704 70 0 8 chr9 78236035 78236517 -39626110 - L1PA8 LINE L1 -9 6163 5686 1381 249 48 66 chr9 78236517 78236851 -39625776 + LTR16C LTR ERVL 165 489 -2 2188 189 97 15 chr9 78237054 78237519 -39625108 + MLT1D LTR MaLR 1 503 -2 813 315 12 0 chr9 78237525 78237776 -39624851 + MIR SINE MIR 9 262 0 213 269 35 91 chr9 78238132 78238326 -39624301 - MIR SINE MIR -64 144 17 356 281 18 9 chr9 78238697 78238811 -39623816 + MIR3 SINE MIR 86 200 -8 21 0 0 0 chr9 78239289 78239310 -39623317 + AT_rich Low_complexity Low_complexity 1 21 0 2833 151 26 18 chr9 78239959 78240416 -39622211 - LTR32 LTR ERVL 0 471 11 225 319 0 0 chr9 78240686 78240758 -39621869 + L2 LINE L2 3201 3272 0 306 293 124 86 chr9 78241185 78241533 -39621094 - L2 LINE L2 -2 3270 2910 288 253 25 0 chr9 78242496 78242575 -39620052 + L1ME4a LINE L1 5846 5926 -195 1986 108 18 14 chr9 78242715 78243144 -39619483 - AluSc SINE Alu 0 430 1 30 27 0 0 chr9 78243164 78243201 -39619426 + AT_rich Low_complexity Low_complexity 1 37 0 4609 102 25 11 chr9 78243278 78243984 -39618643 - L1MA4 LINE L1 0 6300 5585 248 182 0 0 chr9 78244582 78244626 -39618001 + L2 LINE L2 3007 3050 -222 195 315 19 0 chr9 78244750 78244804 -39617823 + L2 LINE L2 3132 3186 -86 544 296 32 21 chr9 78244837 78245023 -39617604 + MIR SINE MIR 17 204 -58 231 167 0 0 chr9 78245087 78245129 -39617498 + (CAG)n Simple_repeat Simple_repeat 1 42 0 419 250 31 16 chr9 78245686 78245814 -39616813 + MIR3 SINE MIR 1 130 -78 210 273 0 0 chr9 78246177 78246232 -39616395 + T-rich Low_complexity Low_complexity 1 55 0 208 227 145 38 chr9 78246915 78247005 -39615622 - MIR SINE MIR -65 143 55 2277 117 0 0 chr9 78247160 78247467 -39615160 + AluSg1 SINE Alu 1 307 -2 384 271 25 17 chr9 78247500 78247618 -39615009 + MER5B DNA MER1_type 60 178 0 253 167 83 42 chr9 78248063 78248135 -39614492 - MLT1K LTR MaLR -464 124 50 2416 155 31 14 chr9 78248168 78248587 -39614040 + MSTB LTR MaLR 1 426 0 863 288 93 40 chr9 78248884 78249262 -39613365 - MLT1K LTR MaLR -4 584 187 230 312 68 51 chr9 78250563 78250800 -39611827 + L1P LINE L1 4901 5141 -1005 1050 275 136 34 chr9 78251008 78251692 -39610935 + L1ME4a LINE L1 5348 6101 -20 279 350 24 0 chr9 78252417 78252540 -39610087 - L3 LINE CR1 -27 1550 1425 415 252 66 66 chr9 78252624 78252898 -39609729 - L1MEd LINE L1 -5250 869 596 377 277 0 0 chr9 78252914 78253015 -39609612 - MER5A DNA MER1_type -80 109 9 422 298 81 6 chr9 78253736 78253897 -39608730 - MIR3 SINE MIR -7 201 29 189 107 0 0 chr9 78254447 78254475 -39608152 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 399 41 0 0 chr9 78254689 78254738 -39607889 + (CA)n Simple_repeat Simple_repeat 2 50 0 617 85 68 59 chr9 78255034 78255152 -39607475 + MER53 DNA DNA 71 189 0 211 239 0 0 chr9 78255376 78255422 -39607205 + (TAA)n Simple_repeat Simple_repeat 2 47 0 588 263 11 65 chr9 78255423 78255609 -39607018 - MIR SINE MIR -29 233 58 212 318 159 0 chr9 78255980 78256087 -39606540 + L2 LINE L2 2992 3115 -157 266 373 42 14 chr9 78256235 78256377 -39606250 - MER5B DNA MER1_type -30 148 3 1975 143 0 13 chr9 78256524 78256825 -39605802 + AluJo SINE Alu 1 297 -15 191 267 0 0 chr9 78256837 78256882 -39605745 + MIR3 SINE MIR 158 202 -6 22 0 0 0 chr9 78257334 78257356 -39605271 + AT_rich Low_complexity Low_complexity 1 22 0 304 272 156 23 chr9 78258148 78258321 -39604306 - MER117 DNA MER1_type 0 197 2 180 231 0 0 chr9 78258322 78258361 -39604266 - MIR3 SINE MIR -48 160 122 1781 224 35 11 chr9 78258365 78258740 -39603887 + MLT1F LTR MaLR 150 533 -9 22 56 0 0 chr9 78259404 78259440 -39603187 + AT_rich Low_complexity Low_complexity 1 36 0 2022 177 42 17 chr9 78259821 78260177 -39602450 + MLT1A1 LTR MaLR 1 365 0 1024 245 21 4 chr9 78260339 78260572 -39602055 - MIR SINE MIR -3 259 23 33 25 0 0 chr9 78260658 78260698 -39601929 + AT_rich Low_complexity Low_complexity 1 40 0 357 258 0 62 chr9 78260888 78260985 -39601642 + MER5B DNA MER1_type 78 168 -10 939 193 158 0 chr9 78261157 78261359 -39601268 + Tigger7 DNA MER2_type 1 234 -2253 636 160 0 0 chr9 78261360 78261460 -39601167 + Tigger7 DNA MER2_type 2382 2481 -6 22 0 0 0 chr9 78261703 78261725 -39600902 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr9 78261788 78261817 -39600810 + AT_rich Low_complexity Low_complexity 1 29 0 193 222 79 0 chr9 78263594 78263657 -39598970 + MIR SINE MIR 69 136 -126 201 167 0 71 chr9 78265145 78265187 -39597440 - L3 LINE CR1 -13 1564 1526 1521 253 61 20 chr9 78265245 78265783 -39596844 + HAL1 LINE L1 1843 2402 -105 237 228 0 0 chr9 78265926 78265983 -39596644 + MLT1I LTR MaLR 85 141 -268 409 253 58 39 chr9 78266063 78266217 -39596410 + MLT1I LTR MaLR 253 409 0 26 30 0 0 chr9 78266587 78266620 -39596007 + AT_rich Low_complexity Low_complexity 1 33 0 1822 225 45 35 chr9 78266640 78267128 -39595499 + MLT1D LTR MaLR 6 498 -7 192 77 0 0 chr9 78267131 78267157 -39595470 + (CA)n Simple_repeat Simple_repeat 1 26 0 29 0 0 0 chr9 78267192 78267221 -39595406 + AT_rich Low_complexity Low_complexity 1 29 0 1894 118 0 47 chr9 78267283 78267625 -39595002 + AluSg SINE Alu 1 328 0 340 295 67 9 chr9 78267640 78267745 -39594882 + MIR SINE MIR 28 138 -70 228 293 150 15 chr9 78267866 78267999 -39594628 + MIR SINE MIR 47 197 -65 226 274 12 12 chr9 78268060 78268144 -39594483 - L2 LINE L2 -654 2660 2577 1954 179 33 41 chr9 78268293 78268661 -39593966 - MLT1A1 LTR MaLR 0 365 1 237 282 14 113 chr9 78269897 78270039 -39592588 - MIR SINE MIR -55 153 26 1261 172 107 8 chr9 78270138 78270399 -39592228 - MLT1F LTR MaLR -20 522 236 211 355 58 13 chr9 78270832 78270987 -39591640 + L2 LINE L2 2223 2384 -930 224 305 8 104 chr9 78271410 78271571 -39591056 - MIR SINE MIR -60 148 1 320 267 20 27 chr9 78273073 78273097 -39589530 - L1MA10 LINE L1 -2 6332 6309 2554 196 41 31 chr9 78273097 78273678 -39588949 - L1ME1 LINE L1 -15 6151 5565 1662 178 11 0 chr9 78277656 78277920 -39584707 + AluJo SINE Alu 1 267 -45 485 129 0 12 chr9 78277920 78278005 -39584622 + (GGAA)n Simple_repeat Simple_repeat 3 86 0 1356 282 22 14 chr9 78278025 78278387 -39584240 - L1M3b LINE L1 -4977 1304 940 1555 294 51 18 chr9 78278512 78279006 -39583621 - L1M3b LINE L1 -5771 510 1 2462 66 0 13 chr9 78279365 78279667 -39582960 - AluY SINE Alu -13 298 1 797 212 66 82 chr9 78279825 78280092 -39582535 + LTR37B LTR ERV1 94 396 -72 7156 80 6 1 chr9 78280092 78281485 -39581142 + L1PA13 LINE L1 4756 6158 -5 797 212 66 82 chr9 78281485 78281557 -39581070 + LTR37B LTR ERV1 396 468 0 294 309 15 73 chr9 78281631 78281767 -39580860 + L2 LINE L2 3141 3268 -4 277 254 157 69 chr9 78281767 78281917 -39580710 - MIR SINE MIR -27 181 33 35 0 0 0 chr9 78282047 78282082 -39580545 + AT_rich Low_complexity Low_complexity 1 35 0 695 289 188 14 chr9 78282401 78283029 -39579598 + L2 LINE L2 2491 3240 -32 751 230 11 0 chr9 78283029 78283203 -39579424 + MER104 DNA MER2_type 1 176 -4 695 289 188 14 chr9 78283203 78283222 -39579405 + L2 LINE L2 3240 3254 -18 2207 105 3 35 chr9 78284848 78285163 -39577464 - AluSq SINE Alu -8 305 1 546 16 0 0 chr9 78285765 78285828 -39576799 + (CA)n Simple_repeat Simple_repeat 2 64 0 333 282 69 0 chr9 78286287 78286418 -39576209 + MIR SINE MIR 123 262 0 21 0 0 0 chr9 78286429 78286450 -39576177 + AT_rich Low_complexity Low_complexity 1 21 0 842 291 86 40 chr9 78286515 78287061 -39575566 - HAL1b LINE L1 -717 631 61 1804 172 3 13 chr9 78287284 78287587 -39575040 - AluJo SINE Alu -12 300 1 279 339 105 27 chr9 78288302 78288559 -39574068 + L2 LINE L2 2812 3088 -225 21 0 0 0 chr9 78288666 78288687 -39573940 + AT_rich Low_complexity Low_complexity 1 21 0 395 176 0 0 chr9 78288863 78288931 -39573696 + L2 LINE L2 3246 3313 0 449 285 67 18 chr9 78289986 78290151 -39572476 - MIR3 SINE MIR -6 202 30 1709 165 6 48 chr9 78290584 78290900 -39571727 + AluJo SINE Alu 1 303 -9 1041 292 66 55 chr9 78291867 78292745 -39569882 - L2 LINE L2 0 3313 2424 546 194 0 0 chr9 78292825 78292918 -39569709 + L2 LINE L2 3217 3309 -4 1029 196 45 0 chr9 78292972 78293151 -39569476 - MER5A DNA MER1_type -2 187 1 252 0 0 0 chr9 78293411 78293439 -39569188 + (CA)n Simple_repeat Simple_repeat 1 28 0 359 271 26 33 chr9 78294118 78294269 -39568358 + L1MC/D LINE L1 4165 4314 -1832 1649 232 97 30 chr9 78294478 78294881 -39567746 + L1MC4 LINE L1 7482 7857 -185 450 0 0 0 chr9 78294881 78294931 -39567696 + (TA)n Simple_repeat Simple_repeat 2 51 0 267 31 0 0 chr9 78294931 78294963 -39567664 + (GA)n Simple_repeat Simple_repeat 1 32 0 1649 232 97 30 chr9 78294963 78295083 -39567544 + L1MC4 LINE L1 7856 8041 -1 675 310 95 15 chr9 78295261 78295722 -39566905 + L1MC/D LINE L1 4518 5015 -1131 654 150 0 34 chr9 78295722 78295869 -39566758 + (GGGGA)n Simple_repeat Simple_repeat 1 142 0 1737 241 104 23 chr9 78295915 78296597 -39566030 + L1MC/D LINE L1 5063 5796 -745 222 128 0 0 chr9 78296617 78296656 -39565971 + (TG)n Simple_repeat Simple_repeat 2 40 0 2383 60 0 0 chr9 78296679 78297011 -39565616 + AluY SINE Alu 2 333 0 787 279 119 36 chr9 78297337 78297750 -39564877 + MLT1L LTR MaLR 165 611 -4 711 255 129 8 chr9 78298294 78298676 -39563951 - L1ME4a LINE L1 -11 6110 5687 312 205 45 0 chr9 78298804 78298916 -39563711 + (TA)n Simple_repeat Simple_repeat 1 117 0 416 286 0 96 chr9 78299526 78299660 -39562967 - MIR SINE MIR -62 146 84 2683 128 62 5 chr9 78299660 78300065 -39562562 + MSTA LTR MaLR 1 428 0 416 286 0 96 chr9 78300065 78300100 -39562527 - MIR SINE MIR -124 84 47 198 353 0 0 chr9 78300419 78300470 -39562157 - MIR SINE MIR -6 256 206 256 204 0 0 chr9 78300886 78300935 -39561692 + MER115 DNA AcHobo 644 692 -1 278 274 97 26 chr9 78300943 78301056 -39561571 - MIR SINE MIR -97 165 45 531 322 54 29 chr9 78302362 78302601 -39560026 - L2 LINE L2 0 3272 3028 282 119 0 0 chr9 78302602 78302644 -39559983 + MADE1 DNA Mariner 39 80 0 294 296 141 33 chr9 78302692 78302996 -39559631 - L2 LINE L2 -344 2970 2634 261 304 101 0 chr9 78303068 78303147 -39559480 - L2 LINE L2 0 3272 3186 452 245 69 19 chr9 78304250 78304409 -39558218 + L3b LINE CR1 1281 1447 -136 189 305 120 70 chr9 78304729 78304929 -39557698 + MIR SINE MIR 53 262 0 319 257 250 14 chr9 78304958 78305106 -39557521 + MIR SINE MIR 29 211 -51 206 0 0 65 chr9 78305483 78305514 -39557113 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 187 217 0 48 chr9 78305819 78305902 -39556725 + GA-rich Low_complexity Low_complexity 2 80 0 403 212 167 15 chr9 78306010 78306142 -39556485 + MER103 DNA DNA 8 159 -7 252 0 0 0 chr9 78306148 78306176 -39556451 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 2332 117 0 0 chr9 78306234 78306542 -39556085 + AluSx SINE Alu 1 308 -4 535 295 47 0 chr9 78306645 78306794 -39555833 - L2 LINE L2 0 3313 3158 932 210 21 16 chr9 78306803 78306989 -39555638 + MLT1D LTR MaLR 1 187 -318 400 119 0 11 chr9 78306989 78307165 -39555462 + AluJb SINE Alu 18 290 -22 1330 204 78 7 chr9 78307172 78307466 -39555161 + MLT1D LTR MaLR 190 504 -1 250 312 43 21 chr9 78307474 78307615 -39555012 - L2 LINE L2 -164 3149 3006 282 95 0 0 chr9 78308358 78308400 -39554227 + (CA)n Simple_repeat Simple_repeat 2 43 0 201 283 28 19 chr9 78308981 78309087 -39553540 - MIR SINE MIR -55 207 101 893 226 47 17 chr9 78309830 78310065 -39552562 - MIR SINE MIR -1 261 20 266 274 210 19 chr9 78310121 78310278 -39552349 - MIR SINE MIR -56 206 20 251 226 87 96 chr9 78311008 78311123 -39551504 + MIR SINE MIR 86 199 -63 286 305 24 0 chr9 78311123 78311205 -39551422 - L2 LINE L2 -42 3271 3188 410 342 15 36 chr9 78312104 78312300 -39550327 - MIR3 SINE MIR 0 208 17 21 0 0 0 chr9 78312663 78312684 -39549943 + AT_rich Low_complexity Low_complexity 1 21 0 799 250 58 45 chr9 78312941 78313249 -39549378 + L1MC4a LINE L1 5658 5969 -152 303 338 112 30 chr9 78313794 78314063 -39548564 + L3 LINE CR1 345 635 -942 1043 208 75 16 chr9 78314168 78314423 -39548204 + L1ME1 LINE L1 5897 6166 0 26 0 0 0 chr9 78314445 78314471 -39548156 + AT_rich Low_complexity Low_complexity 1 26 0 484 348 100 31 chr9 78314594 78315014 -39547613 + L2 LINE L2 2814 3262 -10 320 185 12 49 chr9 78315904 78315985 -39546642 + MIR3 SINE MIR 106 183 -25 317 362 43 27 chr9 78316416 78316604 -39546023 + MIR SINE MIR 2 192 -70 509 245 33 41 chr9 78317128 78317285 -39545342 + MIR SINE MIR 3 157 -63 254 317 10 30 chr9 78317294 78317395 -39545232 - MIR SINE MIR -2 260 162 648 251 73 6 chr9 78317517 78317696 -39544931 + MIR SINE MIR 56 246 -16 326 329 91 41 chr9 78317748 78317947 -39544680 - MIR3 SINE MIR -41 221 15 924 319 146 33 chr9 78318835 78319655 -39542972 + L2 LINE L2 1938 2850 -464 905 295 108 23 chr9 78319658 78320055 -39542572 - MLT1J LTR MaLR 0 511 81 483 364 37 5 chr9 78320119 78320306 -39542321 + L2 LINE L2 3080 3272 0 246 315 67 12 chr9 78320310 78320475 -39542152 + L1ME4a LINE L1 5867 6040 -81 1834 164 3 3 chr9 78321042 78321328 -39541299 + AluJb SINE Alu 3 288 -24 319 316 20 0 chr9 78321501 78321599 -39541028 - L2 LINE L2 -21 3292 3193 267 200 60 0 chr9 78321610 78321660 -39540967 + MER5A DNA MER1_type 45 97 -92 628 319 65 19 chr9 78321716 78322146 -39540481 + L2 LINE L2 1783 2232 -1082 180 154 62 15 chr9 78322453 78322518 -39540109 + (TATATG)n Simple_repeat Simple_repeat 3 70 0 282 294 129 0 chr9 78322539 78322624 -39540003 + MIR SINE MIR 142 237 -25 289 353 65 7 chr9 78323490 78323643 -39538984 - L3 LINE CR1 -117 1460 1299 226 277 0 12 chr9 78323702 78323785 -39538842 + (AATAG)n Simple_repeat Simple_repeat 2 83 0 340 307 56 28 chr9 78323932 78324111 -39538516 - L3 LINE CR1 -311 1266 1083 342 266 32 82 chr9 78324651 78324809 -39537818 - MIR SINE MIR -56 152 3 208 261 245 10 chr9 78326630 78326750 -39535877 - MIR SINE MIR -64 144 15 439 316 58 0 chr9 78327394 78327533 -39535094 + MIR SINE MIR 41 187 -75 1307 310 117 24 chr9 78327915 78328764 -39533863 + L2 LINE L2 2370 3286 -27 496 310 86 5 chr9 78329148 78329335 -39533292 - MIR SINE MIR -8 254 53 210 143 0 0 chr9 78330492 78330527 -39532100 + (A)n Simple_repeat Simple_repeat 1 35 0 2015 115 3 21 chr9 78330652 78330977 -39531650 + AluSp SINE Alu 1 320 0 24 0 0 0 chr9 78331251 78331275 -39531352 + AT_rich Low_complexity Low_complexity 1 24 0 399 307 55 16 chr9 78331454 78331581 -39531046 + MIR3 SINE MIR 12 143 -65 215 254 36 0 chr9 78331606 78331661 -39530966 - MIR SINE MIR -89 173 117 346 290 82 57 chr9 78332321 78332600 -39530027 + L2 LINE L2 2991 3276 -37 289 257 31 37 chr9 78332826 78332924 -39529703 + MIR SINE MIR 96 189 -63 700 88 8 80 chr9 78332988 78333039 -39529588 - L1MB3 LINE L1 -2 6181 6128 2378 98 3 0 chr9 78333039 78333344 -39529283 - AluSg SINE Alu -4 306 1 700 88 8 80 chr9 78333344 78333417 -39529210 - L1MB3 LINE L1 -55 6128 6066 276 325 140 0 chr9 78333532 78333646 -39528981 - MIR3 SINE MIR -35 173 44 600 233 59 102 chr9 78333683 78333919 -39528708 + MLT1C LTR MaLR 240 465 -2 329 267 32 80 chr9 78333974 78334161 -39528466 - MIR SINE MIR -74 188 11 2206 86 0 30 chr9 78334651 78334954 -39527673 + AluSg SINE Alu 1 294 -16 228 274 19 38 chr9 78335341 78335447 -39527180 + MLT1J LTR MaLR 395 498 -13 249 33 0 0 chr9 78335494 78335524 -39527103 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 1085 242 52 4 chr9 78335527 78335796 -39526831 - AluJo SINE Alu -30 282 1 288 0 0 0 chr9 78336623 78336655 -39525972 + (CA)n Simple_repeat Simple_repeat 1 32 0 240 86 0 0 chr9 78336655 78336690 -39525937 + (GA)n Simple_repeat Simple_repeat 1 35 0 4064 153 26 16 chr9 78336690 78337030 -39525597 + L1MB2 LINE L1 5476 5811 -360 912 215 142 65 chr9 78337030 78337369 -39525258 + MLT1A1 LTR MaLR 1 365 0 4064 153 26 16 chr9 78337369 78337710 -39524917 + L1MB2 LINE L1 5811 6164 -7 368 240 0 48 chr9 78337753 78337857 -39524770 - MER5B DNA MER1_type -3 175 77 3056 110 16 11 chr9 78337929 78338376 -39524251 - L1PA16 LINE L1 0 6166 5718 219 329 17 35 chr9 78338426 78338544 -39524083 + MIR SINE MIR 19 129 -79 * 237 333 0 0 chr9 78338534 78338600 -39524027 + L2 LINE L2 3248 3313 0 356 278 0 22 chr9 78338746 78338836 -39523791 - MIR3 SINE MIR -28 180 93 286 269 52 52 chr9 78339407 78339541 -39523086 - L2 LINE L2 0 3272 3139 950 263 13 4 chr9 78339643 78339875 -39522752 + MIR SINE MIR 4 237 -25 188 264 0 19 chr9 78339845 78339898 -39522729 + L2 LINE L2 3213 3264 -8 * 198 121 0 30 chr9 78339892 78339925 -39522702 + L2 LINE L2 3192 3223 -90 309 295 53 53 chr9 78339972 78340162 -39522465 + L1MEd LINE L1 97 286 -5919 237 210 0 0 chr9 78340207 78340269 -39522358 + (ATG)n Simple_repeat Simple_repeat 1 62 0 707 255 52 75 chr9 78341563 78341830 -39520797 + MIR SINE MIR 2 262 0 239 304 0 0 chr9 78341959 78342015 -39520612 - L2 LINE L2 -215 3057 3002 300 244 32 4 chr9 78342529 78342656 -39519971 + MER91A DNA MER1_type 1 178 -12 461 217 0 0 chr9 78342663 78342760 -39519867 + L1MC4 LINE L1 6439 6544 -1460 988 226 100 2 chr9 78342761 78343194 -39519433 + L1MC4 LINE L1 7531 8042 0 236 246 16 57 chr9 78343235 78343357 -39519270 + L1PBa LINE L1 2566 2682 -4181 3534 278 59 15 chr9 78343453 78343546 -39519081 + L1MEd LINE L1 2032 2119 -4096 189 0 0 0 chr9 78343546 78343567 -39519060 + (TAA)n Simple_repeat Simple_repeat 3 23 0 3534 278 59 15 chr9 78343567 78345133 -39517494 + L1MEd LINE L1 2119 3730 -2485 289 313 30 30 chr9 78345207 78345341 -39517286 - L3 LINE CR1 -132 1445 1312 212 236 22 146 chr9 78345460 78345549 -39517078 + L2 LINE L2 3181 3258 -14 274 271 133 133 chr9 78346147 78346501 -39516126 + L2 LINE L2 2866 3219 -53 450 215 131 0 chr9 78346722 78346829 -39515798 - L2 LINE L2 0 3313 3193 372 172 0 65 chr9 78347650 78347672 -39514955 + L1MB3 LINE L1 6063 6085 -98 1939 185 39 14 chr9 78347672 78348028 -39514599 + MLT1A1 LTR MaLR 1 365 0 372 172 0 65 chr9 78348028 78348098 -39514529 + L1MB3 LINE L1 6085 6149 -34 435 286 0 0 chr9 78348260 78348365 -39514262 - MIR SINE MIR -106 156 52 806 143 40 74 chr9 78349341 78349516 -39513111 + L1MB2 LINE L1 5996 6164 -7 274 369 5 46 chr9 78350039 78350256 -39512371 + L3 LINE CR1 787 994 -583 1143 221 9 0 chr9 78350262 78350479 -39512148 - MER58A DNA MER1_type -5 219 1 287 326 163 16 chr9 78350609 78350854 -39511773 - L3 LINE CR1 -977 600 320 403 308 161 60 chr9 78350939 78351238 -39511389 + MER102a DNA MER1_type 1 329 -1 188 339 62 51 chr9 78351250 78351445 -39511182 - L3 LINE CR1 -1374 203 7 772 277 97 1 chr9 78353300 78353728 -39508899 - LTR33 LTR ERVL -6 515 25 525 223 30 48 chr9 78354450 78354589 -39508038 + L1MEd LINE L1 4286 4423 -1792 2450 66 0 3 chr9 78354589 78354891 -39507736 + AluY SINE Alu 1 301 -10 525 223 30 48 chr9 78354891 78354917 -39507710 + L1MEd LINE L1 4423 4448 -1767 216 339 172 33 chr9 78356785 78357307 -39505320 + L2 LINE L2 2283 2877 -437 214 200 0 20 chr9 78357420 78357470 -39505157 + (CATATA)n Simple_repeat Simple_repeat 6 54 0 536 240 15 8 chr9 78357474 78357624 -39505003 - MIR SINE MIR -62 146 21 1541 179 91 51 chr9 78358285 78358636 -39503991 - MLT1A1 LTR MaLR 0 365 1 3071 198 85 7 chr9 78358636 78359236 -39503391 - MLT1A1-int LTR MaLR 0 1735 1089 381 269 0 0 chr9 78359221 78359299 -39503328 - MLT1A1-int LTR MaLR -751 984 907 * 336 242 21 11 chr9 78359429 78359524 -39503103 - MLT1A1-int LTR MaLR -1055 680 585 195 256 0 0 chr9 78359551 78359594 -39503033 + L2 LINE L2 2716 2758 -556 13185 154 18 8 chr9 78359687 78363087 -39499540 - L1MA3 LINE L1 0 6305 2870 38783 39 29 1 chr9 78363190 78367909 -39494718 - L1P LINE L1 -1297 4849 2 424 215 0 0 chr9 78367935 78368014 -39494613 - MER116 DNA Mariner 0 80 2 2137 110 10 0 chr9 78368057 78368348 -39494279 + AluSq SINE Alu 1 294 -19 1605 222 51 94 chr9 78368403 78368990 -39493637 + MLT1F1 LTR MaLR 1 567 0 261 333 76 23 chr9 78369132 78369303 -39493324 + MIR SINE MIR 21 200 -62 192 346 0 0 chr9 78369376 78369428 -39493199 - MIR SINE MIR -160 102 51 398 271 21 10 chr9 78369463 78369559 -39493068 + MIR3 SINE MIR 91 187 -21 385 316 12 30 chr9 78370789 78370957 -39491670 + MIR SINE MIR 28 192 -70 706 182 26 65 chr9 78370996 78371150 -39491477 + MER58B DNA MER1_type 13 160 -181 238 192 27 14 chr9 78371150 78371223 -39491404 + (TA)n Simple_repeat Simple_repeat 2 75 0 706 206 82 18 chr9 78371261 78371480 -39491147 + MER58B DNA MER1_type 104 336 -5 829 313 46 26 chr9 78371879 78372336 -39490291 + L1ME LINE L1 5351 5816 -305 2169 112 0 0 chr9 78372506 78372812 -39489815 - AluSg SINE Alu 0 310 5 641 228 55 14 chr9 78374366 78374511 -39488116 - MIR SINE MIR -91 171 21 234 345 17 52 chr9 78374971 78375087 -39487540 - MIR SINE MIR -57 151 40 1263 141 15 0 chr9 78376071 78376269 -39486358 - L1MB1 LINE L1 -171 5997 5797 353 22 22 0 chr9 78376269 78376315 -39486312 + (TC)n Simple_repeat Simple_repeat 1 47 0 302 136 0 0 chr9 78376322 78376388 -39486239 + L1 LINE L1 5244 5309 -837 4980 192 27 36 chr9 78376411 78377933 -39484694 - L1MB1 LINE L1 -378 5790 4263 183 147 29 0 chr9 78378590 78378624 -39484003 + L2 LINE L2 3029 3063 -209 239 301 184 0 chr9 78378747 78378850 -39483777 + L2 LINE L2 3143 3264 -8 228 356 93 8 chr9 78378992 78379110 -39483517 + MIR SINE MIR 16 143 -65 285 29 0 0 chr9 78379704 78379738 -39482889 + (TG)n Simple_repeat Simple_repeat 1 34 0 892 331 67 54 chr9 78380610 78381278 -39481349 + L3 LINE CR1 891 1567 -10 538 224 178 17 chr9 78382510 78382684 -39479943 - MIR SINE MIR -14 248 47 248 325 79 8 chr9 78382777 78382903 -39479724 - MIR3 SINE MIR -62 146 12 230 0 0 0 chr9 78383561 78383588 -39479039 + Alu SINE Alu 262 288 -12 5493 123 12 7 chr9 78383689 78384554 -39478073 - L1M1 LINE L1 -4653 2912 2044 700 160 154 57 chr9 78384554 78384729 -39477898 - MLT1A1 LTR MaLR -173 192 1 206 352 57 0 chr9 78384943 78385048 -39477579 - MIR SINE MIR -68 140 30 641 352 157 48 chr9 78385320 78386542 -39476085 - L2 LINE L2 -349 2965 1610 2035 171 48 50 chr9 78386884 78387281 -39475346 - MSTD LTR MaLR 0 396 1 444 372 67 27 chr9 78387293 78387696 -39474931 - L2 LINE L2 -2508 806 388 2234 109 0 0 chr9 78387792 78388086 -39474541 + AluSx SINE Alu 1 294 -18 982 219 5 10 chr9 78388131 78388332 -39474295 + AluJo SINE Alu 96 295 -17 323 247 67 72 chr9 78389042 78389236 -39473391 + MIR SINE MIR 14 206 -56 7679 230 39 16 chr9 78389412 78391183 -39471444 + L1M3d LINE L1 619 2137 -4516 432 299 0 0 chr9 78391279 78391416 -39471211 - L1M4c LINE L1 -4919 1465 1329 * 1169 138 6 135 chr9 78391407 78391680 -39470947 + L1MA8 LINE L1 5862 6092 -199 2126 120 3 7 chr9 78391680 78391979 -39470648 - AluSx SINE Alu -14 298 1 1169 138 6 135 chr9 78391979 78392017 -39470610 + L1MA8 LINE L1 6092 6133 -158 198 71 0 0 chr9 78393278 78393306 -39469321 + (TC)n Simple_repeat Simple_repeat 1 28 0 345 333 147 7 chr9 78393617 78393923 -39468704 + L2 LINE L2 2507 2855 -459 321 264 101 56 chr9 78394275 78394453 -39468174 - MIR3 SINE MIR -3 205 20 393 220 119 51 chr9 78394885 78395062 -39467565 - MIR SINE MIR -46 216 28 2517 136 0 11 chr9 78395076 78395458 -39467169 + L1MB3 LINE L1 5804 6181 -2 1272 264 157 25 chr9 78395771 78396256 -39466371 + L2 LINE L2 2080 2628 -686 459 284 41 7 chr9 78396256 78396429 -39466198 + LTR16A1 LTR ERVL 1 179 -271 576 251 96 59 chr9 78396438 78396643 -39465984 + L2 LINE L2 2998 3194 -119 192 40 0 0 chr9 78396643 78396668 -39465959 + (GA)n Simple_repeat Simple_repeat 1 25 0 576 251 96 59 chr9 78396668 78396734 -39465893 + L2 LINE L2 3194 3284 -29 2091 193 49 62 chr9 78396734 78397246 -39465381 - MLT1D LTR MaLR 0 505 1 576 251 96 59 chr9 78397246 78397276 -39465351 + L2 LINE L2 3284 3311 -2 296 299 167 7 chr9 78397282 78397426 -39465201 - MIR SINE MIR -64 198 32 262 336 64 9 chr9 78397462 78397572 -39465055 + L2 LINE L2 3122 3237 -35 180 111 0 0 chr9 78397575 78397602 -39465025 + (TAG)n Simple_repeat Simple_repeat 1 27 0 181 296 0 0 chr9 78397604 78397648 -39464979 - MIR SINE MIR -13 249 206 443 256 111 45 chr9 78397976 78398175 -39464452 - MIR SINE MIR -41 221 10 1356 298 103 50 chr9 78399218 78399774 -39462853 - L2 LINE L2 0 3313 2788 2513 139 40 21 chr9 78399774 78400197 -39462430 + MSTB1 LTR MaLR 1 431 -1 1356 298 103 50 chr9 78400197 78400710 -39461917 - L2 LINE L2 -525 2788 1949 1988 131 7 7 chr9 78400710 78401001 -39461626 + AluSx SINE Alu 1 291 -21 1356 298 103 50 chr9 78401001 78401095 -39461532 - L2 LINE L2 -1364 1949 1861 432 228 49 68 chr9 78401242 78401258 -39461369 - LTR67 LTR ERVL -8 549 534 180 0 0 0 chr9 78401258 78401278 -39461349 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 432 228 49 68 chr9 78401278 78401423 -39461204 - LTR67 LTR ERVL -23 534 391 493 313 74 61 chr9 78401657 78402235 -39460392 + MLT1L LTR MaLR 26 611 -4 228 304 152 78 chr9 78402323 78402619 -39460008 + L2 LINE L2 2945 3262 -10 291 276 158 24 chr9 78402770 78402897 -39459730 - MIR3 SINE MIR -33 175 32 1316 197 125 88 chr9 78403690 78404177 -39458450 + MLT1D LTR MaLR 1 505 0 1566 202 24 7 chr9 78404441 78404738 -39457889 + AluJo SINE Alu 7 308 -4 339 340 45 15 chr9 78405424 78405624 -39457003 - L2 LINE L2 -549 2765 2560 416 249 202 12 chr9 78406628 78406801 -39455826 + MIR SINE MIR 2 207 -55 299 300 159 70 chr9 78407273 78407530 -39455097 + L2 LINE L2 2985 3264 -8 671 264 11 29 chr9 78407637 78407811 -39454816 + MER58A DNA MER1_type 37 207 -17 279 277 109 20 chr9 78407847 78407948 -39454679 + MIR SINE MIR 123 232 -30 437 181 12 0 chr9 78409180 78409263 -39453364 - MER96 DNA MER1_type? -1 174 91 192 204 0 23 chr9 78409269 78409313 -39453314 + MIR SINE MIR 172 214 -48 367 311 101 40 chr9 78409583 78409811 -39452816 - L2 LINE L2 -527 2787 2546 560 253 11 84 chr9 78410223 78410401 -39452226 + L3 LINE CR1 1406 1570 -7 2019 131 3 3 chr9 78410588 78410885 -39451742 + AluJb SINE Alu 1 297 -15 24 0 0 0 chr9 78411578 78411602 -39451025 + AT_rich Low_complexity Low_complexity 1 24 0 887 223 95 5 chr9 78411619 78411830 -39450797 - MIR SINE MIR -25 237 8 181 265 36 12 chr9 78412149 78412232 -39450395 - L2 LINE L2 -291 2981 2897 970 309 90 16 chr9 78412342 78412862 -39449765 - L2 LINE L2 -12 3301 2738 625 327 175 10 chr9 78412916 78413225 -39449402 + L2 LINE L2 2910 3269 -3 265 185 15 46 chr9 78413690 78413755 -39448872 - L2 LINE L2 -2 3270 3208 260 333 29 0 chr9 78413751 78413820 -39448807 + MIR SINE MIR 48 118 -144 * 302 324 117 60 chr9 78414012 78414311 -39448316 + L2 LINE L2 2956 3271 -1 212 235 12 62 chr9 78414834 78414915 -39447712 - MIR SINE MIR -2 260 184 398 285 114 6 chr9 78415429 78415587 -39447040 - MIR SINE MIR -72 190 16 285 297 10 30 chr9 78416345 78416446 -39446181 - MIR SINE MIR -57 205 107 1123 226 66 13 chr9 78416712 78417011 -39445616 + MLT1D LTR MaLR 143 457 -48 2690 114 5 2 chr9 78417011 78417443 -39445184 - MER1A DNA MER1_type 0 529 57 257 163 0 0 chr9 78417462 78417505 -39445122 + MLT1D LTR MaLR 453 495 -10 319 242 137 20 chr9 78417674 78417827 -39444800 + L1ME4a LINE L1 5736 5906 -215 310 252 112 14 chr9 78417874 78418017 -39444610 + L1ME4a LINE L1 5965 6121 0 414 302 58 22 chr9 78418054 78418279 -39444348 + L1ME LINE L1 5591 5823 -298 22 0 0 0 chr9 78418625 78418647 -39443980 + AT_rich Low_complexity Low_complexity 1 22 0 270 242 32 42 chr9 78418851 78418946 -39443681 + L2 LINE L2 3219 3312 -1 * 322 357 132 11 chr9 78418944 78419265 -39443362 + L2 LINE L2 2737 3104 -168 180 211 123 18 chr9 78419830 78419887 -39442740 + L2 LINE L2 3251 3313 0 22 0 0 0 chr9 78420187 78420209 -39442418 + AT_rich Low_complexity Low_complexity 1 22 0 476 254 77 15 chr9 78420862 78420992 -39441635 - L2 LINE L2 0 3313 3176 1869 196 40 3 chr9 78421571 78421923 -39440704 + MLT1A1 LTR MaLR 1 365 0 24 53 0 0 chr9 78422206 78422244 -39440383 + AT_rich Low_complexity Low_complexity 1 38 0 606 261 36 0 chr9 78422401 78422596 -39440031 + MER46C DNA MER2_type 118 319 -19 1074 260 29 26 chr9 78423172 78423514 -39439113 - MLT1I LTR MaLR 0 409 67 261 233 17 17 chr9 78423551 78423611 -39439016 - L2 LINE L2 -9 3304 3245 318 296 119 53 chr9 78424063 78424289 -39438338 - MIR SINE MIR -12 250 10 34 42 0 0 chr9 78424440 78424488 -39438139 + AT_rich Low_complexity Low_complexity 1 48 0 30 77 0 0 chr9 78424530 78424595 -39438032 + AT_rich Low_complexity Low_complexity 1 65 0 365 85 0 17 chr9 78424757 78424816 -39437811 + (TGAA)n Simple_repeat Simple_repeat 4 61 0 1887 164 20 23 chr9 78425000 78425390 -39437237 + L1MB5 LINE L1 5777 6165 -9 454 261 62 90 chr9 78425589 78425800 -39436827 - MIR SINE MIR -45 217 13 488 289 16 8 chr9 78426176 78426304 -39436323 - MIR3 SINE MIR -48 160 32 379 319 37 25 chr9 78426919 78427082 -39435545 - MIR3 SINE MIR -24 184 20 267 333 97 36 chr9 78427480 78427675 -39434952 + MIR SINE MIR 29 235 -27 3738 120 47 3 chr9 78427694 78428309 -39434318 - L1MA8 LINE L1 -5 6286 5645 204 211 37 156 chr9 78428437 78428546 -39434081 + L2 LINE L2 3180 3275 -38 435 298 216 0 chr9 78429263 78429471 -39433156 - MIR SINE MIR -9 253 1 277 282 29 0 chr9 78429636 78429739 -39432888 + (TA)n Simple_repeat Simple_repeat 1 106 0 327 271 0 83 chr9 78429837 78429970 -39432657 - MIR SINE MIR -17 245 124 671 328 80 0 chr9 78429984 78430222 -39432405 - MIR SINE MIR 0 262 6 226 301 21 32 chr9 78430229 78430322 -39432305 - MIR SINE MIR -151 111 20 201 382 72 53 chr9 78430433 78430810 -39431817 - L2 LINE L2 -558 2756 2373 2346 104 0 7 chr9 78431202 78431509 -39431118 + AluSq SINE Alu 1 305 -8 529 248 43 0 chr9 78431630 78431747 -39430880 + Tigger3(Golem) DNA MER2_type 1 122 -2907 * 3517 89 134 28 chr9 78431736 78432407 -39430220 + Tigger3(Golem) DNA MER2_type 2288 3029 0 309 158 105 42 chr9 78432418 78432513 -39430114 + L1ME4a LINE L1 5902 6002 -119 377 317 33 0 chr9 78432517 78432637 -39429990 - L2 LINE L2 -2 3311 3188 255 262 16 0 chr9 78432756 78432817 -39429810 - MIR SINE MIR -150 112 51 2415 79 0 19 chr9 78432920 78433236 -39429391 + AluY SINE Alu 1 310 -1 1908 185 5 20 chr9 78433652 78434042 -39428585 + MLT1B LTR MaLR 7 390 0 183 265 61 0 chr9 78434048 78434097 -39428530 + L2 LINE L2 3262 3313 0 253 343 10 0 chr9 78434709 78434811 -39427816 - MIR3 SINE MIR -12 196 94 735 339 28 4 chr9 78434903 78435154 -39427473 - L3 LINE CR1 -72 1505 1249 286 301 55 0 chr9 78436529 78436602 -39426025 - L2 LINE L2 -48 3224 3148 205 194 32 65 chr9 78438059 78438119 -39424508 + MER5A DNA MER1_type 108 165 -24 236 317 10 30 chr9 78438119 78438220 -39424407 + MER5B DNA MER1_type 1 99 -79 289 306 113 38 chr9 78438855 78439015 -39423612 + MIR SINE MIR 9 180 -82 570 282 62 50 chr9 78439287 78439528 -39423099 + L3 LINE CR1 1042 1285 -292 228 346 26 0 chr9 78439647 78439725 -39422902 + L3 LINE CR1 1466 1545 -32 337 319 184 0 chr9 78440456 78440597 -39422030 + MIR3 SINE MIR 22 188 -20 559 356 130 42 chr9 78440910 78441428 -39421199 - L2 LINE L2 0 3272 2711 800 291 12 25 chr9 78442024 78442268 -39420359 + MIR SINE MIR 21 261 -1 190 354 15 15 chr9 78442267 78442332 -39420295 + MER5A DNA MER1_type 97 161 -28 * 302 242 172 16 chr9 78442373 78442501 -39420126 - MIR SINE MIR -29 233 86 180 154 77 0 chr9 78442889 78442928 -39419699 + L2 LINE L2 3200 3241 -31 203 152 0 0 chr9 78444130 78444163 -39418464 + GA-rich Low_complexity Low_complexity 1 33 0 2365 76 33 0 chr9 78444314 78444434 -39418193 + AluY SINE Alu 1 116 -195 369 0 0 0 chr9 78444434 78444475 -39418152 + (TAA)n Simple_repeat Simple_repeat 2 42 0 2365 76 33 0 chr9 78444475 78444655 -39417972 + AluY SINE Alu 116 311 0 2339 105 0 16 chr9 78445173 78445488 -39417139 + AluSx SINE Alu 1 310 -2 490 253 45 19 chr9 78445711 78445865 -39416762 + MIR SINE MIR 95 252 -10 270 388 45 22 chr9 78446117 78446251 -39416376 + L2 LINE L2 3117 3253 -19 251 50 50 0 chr9 78446463 78446503 -39416124 + (TTTTG)n Simple_repeat Simple_repeat 3 44 0 496 191 0 0 chr9 78446933 78447027 -39415600 + L1MA9 LINE L1 5693 5786 -548 826 107 8 0 chr9 78447027 78447148 -39415479 + Tigger4(Zombi) DNA MER2_type 3 124 -2607 1038 152 104 14 chr9 78447189 78447400 -39415227 + MSTA LTR MaLR 1 230 -198 297 125 0 0 chr9 78447400 78447456 -39415171 + (TC)n Simple_repeat Simple_repeat 2 57 0 1150 146 85 5 chr9 78447456 78447668 -39414959 + MSTA LTR MaLR 200 428 0 1031 117 0 23 chr9 78447669 78447840 -39414787 + Tigger4(Zombi) DNA MER2_type 2565 2731 0 1759 192 6 79 chr9 78447840 78448372 -39414255 + L1MA9 LINE L1 5784 6276 -36 946 194 24 0 chr9 78448397 78448562 -39414065 + FAM SINE Alu 1 169 -6 482 171 19 0 chr9 78448562 78448660 -39413967 + GA-rich Low_complexity Low_complexity 6 108 0 22 70 0 0 chr9 78448680 78448723 -39413904 + AT_rich Low_complexity Low_complexity 1 43 0 337 306 117 37 chr9 78448858 78449129 -39413498 + L1M4 LINE L1 2792 3095 -3051 2038 144 3 0 chr9 78449129 78449447 -39413180 + AluSq SINE Alu 1 313 0 337 306 117 37 chr9 78449447 78449499 -39413128 + L1M4 LINE L1 3095 3141 -3005 1884 174 3 0 chr9 78450285 78450583 -39412044 - AluSx SINE Alu -13 299 1 700 313 118 33 chr9 78450623 78450675 -39411952 + L1M4 LINE L1 3715 3761 -2385 2763 156 8 16 chr9 78450675 78451176 -39411451 + L1PB4 LINE L1 5660 6156 0 700 313 118 33 chr9 78451176 78451642 -39410985 + L1M4 LINE L1 3761 4276 -1870 2263 119 6 3 chr9 78452058 78452369 -39410258 - AluSq SINE Alu -1 312 1 1912 198 41 58 chr9 78452446 78452960 -39409667 + MLT1D LTR MaLR 1 505 0 2630 127 25 2 chr9 78453094 78453496 -39409131 + LTR57 LTR ERVL 1 411 0 21 57 0 0 chr9 78453541 78453576 -39409051 + AT_rich Low_complexity Low_complexity 1 35 0 2817 137 19 29 chr9 78453914 78454438 -39408189 + L1MA5 LINE L1 5777 6295 -5 407 266 101 27 chr9 78454517 78454705 -39407922 - L2 LINE L2 0 3313 3112 233 347 112 18 chr9 78454804 78454974 -39407653 + L3 LINE CR1 41 226 -1351 2080 130 18 24 chr9 78455490 78455829 -39406798 - MER1B DNA MER1_type 0 337 1 1885 182 90 49 chr9 78455834 78456280 -39406347 + MLT2B1 LTR ERVL 1 464 -56 180 165 66 0 chr9 78456302 78456393 -39406234 + (TA)n Simple_repeat Simple_repeat 1 97 0 28 48 0 0 chr9 78456485 78456527 -39406100 + AT_rich Low_complexity Low_complexity 1 42 0 1345 156 83 10 chr9 78456533 78456835 -39405792 - MER33 DNA MER1_type 0 324 1 225 0 0 0 chr9 78457510 78457535 -39405092 + (CA)n Simple_repeat Simple_repeat 2 26 0 533 277 101 0 chr9 78457938 78458097 -39404530 - MER5A DNA MER1_type -6 183 9 687 257 56 9 chr9 78458746 78458960 -39403667 - MIR SINE MIR 0 262 39 255 103 0 0 chr9 78459457 78459496 -39403131 + (CA)n Simple_repeat Simple_repeat 1 39 0 232 339 110 0 chr9 78459690 78459799 -39402828 - L2 LINE L2 -1 3271 3151 281 333 97 18 chr9 78459809 78459923 -39402704 - L2 LINE L2 -38 3234 3112 1332 93 20 5 chr9 78459960 78460164 -39402463 + L1MA4A LINE L1 6091 6297 -6 281 298 61 61 chr9 78461281 78461412 -39401215 - L2 LINE L2 0 3272 3142 281 155 17 0 chr9 78463284 78463342 -39399285 + (CA)n Simple_repeat Simple_repeat 1 59 0 360 296 238 17 chr9 78464157 78464397 -39398230 + L3 LINE CR1 315 607 -970 1894 109 0 8 chr9 78464687 78464944 -39397683 + AluSx SINE Alu 1 255 -57 261 261 0 0 chr9 78464966 78465054 -39397573 + (CATA)n Simple_repeat Simple_repeat 3 90 0 230 156 0 0 chr9 78465072 78465117 -39397510 - LTR66 LTR ERVL -172 438 394 256 203 14 14 chr9 78465220 78465294 -39397333 + L1MC4 LINE L1 6629 6702 -1340 231 176 0 0 chr9 78465267 78465318 -39397309 - L1MC4 LINE L1 -1339 6703 6653 * 21 0 0 0 chr9 78465889 78465910 -39396717 + AT_rich Low_complexity Low_complexity 1 21 0 2543 74 0 0 chr9 78466689 78466998 -39395629 + AluSc SINE Alu 1 309 0 477 272 113 42 chr9 78467871 78468136 -39394491 + LTR33 LTR ERVL 2 285 -236 873 183 64 30 chr9 78468465 78468667 -39393960 + MER3 DNA MER1_type 1 209 0 1416 180 25 11 chr9 78468723 78469007 -39393620 + L1PB4 LINE L1 5869 6156 0 1793 197 22 114 chr9 78469204 78469489 -39393138 - MLT1D LTR MaLR 0 505 294 619 46 0 23 chr9 78469489 78469576 -39393051 - L1PA6 LINE L1 -7 6147 6063 1793 197 22 114 chr9 78469576 78469844 -39392783 - MLT1D LTR MaLR -211 294 3 1504 137 45 48 chr9 78470977 78471291 -39391336 + MER33 DNA MER1_type 12 324 0 196 319 14 14 chr9 78471584 78471653 -39390974 - L2 LINE L2 -1363 1951 1883 330 328 82 8 chr9 78472636 78472770 -39389857 + MIR3 SINE MIR 3 146 -62 423 272 44 33 chr9 78473410 78473606 -39389021 + MIR SINE MIR 5 198 -64 1959 101 76 4 chr9 78474247 78474405 -39388222 - AluY SINE Alu -15 296 151 195 42 0 0 chr9 78474405 78474429 -39388198 + (TA)n Simple_repeat Simple_repeat 1 24 0 180 0 0 0 chr9 78474428 78474448 -39388179 + (GA)n Simple_repeat Simple_repeat 2 21 0 * 1959 101 76 4 chr9 78474429 78474565 -39388062 - AluY SINE Alu -160 151 1 906 199 21 26 chr9 78474605 78474796 -39387831 - MSTD LTR MaLR 0 396 207 4486 161 63 34 chr9 78474807 78475276 -39387351 + L1MB1 LINE L1 4654 5108 -1060 2428 68 0 10 chr9 78475276 78475584 -39387043 + AluY SINE Alu 1 305 -6 4486 161 63 34 chr9 78475584 78476578 -39386049 + L1MB1 LINE L1 5108 6165 -3 317 290 65 11 chr9 78476665 78476758 -39385869 + L2 LINE L2 3201 3298 -15 432 294 64 0 chr9 78477244 78477448 -39385179 + L1M4 LINE L1 3691 3907 -2239 414 332 163 24 chr9 78477568 78478162 -39384465 + L1M4 LINE L1 3979 4655 -1491 955 118 0 7 chr9 78478659 78478795 -39383832 + AluSq/x SINE Alu 1 135 -177 2354 81 0 7 chr9 78478795 78479092 -39383535 + AluSc SINE Alu 1 295 -14 541 285 79 22 chr9 78479759 78480128 -39382499 + L1M4 LINE L1 3520 3909 -2237 4286 218 58 55 chr9 78480158 78480337 -39382290 + L1M4 LINE L1 12 189 -6353 1711 197 0 0 chr9 78480337 78480646 -39381981 + AluJo SINE Alu 1 309 -3 4286 218 58 55 chr9 78480646 78481699 -39380928 + L1M4 LINE L1 189 1248 -5294 1880 220 56 57 chr9 78481888 78481996 -39380631 + L1M4 LINE L1 1215 1322 -5324 393 167 0 0 chr9 78481996 78482062 -39380565 + L1MC1 LINE L1 6250 6315 -18 1880 220 56 57 chr9 78482062 78482615 -39380012 + L1M4 LINE L1 1322 1872 -4774 12865 199 29 13 chr9 78482627 78486695 -39375932 + L1PA14 LINE L1 1 4136 -2661 5300 147 27 1 chr9 78486698 78488120 -39374507 + L1PA14 LINE L1 5329 6784 -28 29 0 0 0 chr9 78488152 78488181 -39374446 + AT_rich Low_complexity Low_complexity 1 29 0 1641 253 40 43 chr9 78488337 78488795 -39373832 + L1M4 LINE L1 2006 2464 -4180 3463 132 25 5 chr9 78488795 78489385 -39373242 + L1MA4 LINE L1 5693 6294 -6 1641 253 40 43 chr9 78489385 78490325 -39372302 + L1M4 LINE L1 2464 3309 -3335 231 114 0 0 chr9 78490669 78490704 -39371923 + (GGAAA)n Simple_repeat Simple_repeat 5 39 0 412 375 76 23 chr9 78491977 78492492 -39370135 + L2 LINE L2 2717 3258 -14 447 296 112 0 chr9 78492854 78493006 -39369621 - MIR3 SINE MIR -9 199 31 361 339 9 0 chr9 78493738 78493850 -39368777 + MIR SINE MIR 24 136 -126 207 225 11 157 chr9 78494154 78494243 -39368384 - L2 LINE L2 0 3272 3197 329 269 169 15 chr9 78495116 78495246 -39367381 - MIR SINE MIR -10 252 103 2286 150 35 33 chr9 78495781 78496208 -39366419 - Tigger2a DNA MER2_type -6 428 1 239 286 33 0 chr9 78496322 78496413 -39366214 - L1ME4a LINE L1 -195 5926 5833 426 222 0 0 chr9 78497029 78497110 -39365517 - L2 LINE L2 -627 2687 2607 441 216 239 0 chr9 78497163 78497297 -39365330 + L3 LINE CR1 1406 1571 -6 270 81 0 0 chr9 78497488 78497525 -39365102 + (TG)n Simple_repeat Simple_repeat 2 38 0 2325 233 92 62 chr9 78498151 78499190 -39363437 - L2 LINE L2 -4 3309 2303 1475 96 0 84 chr9 78499190 78499334 -39363293 + MER30 DNA MER1_type 1 155 -75 180 0 0 0 chr9 78499334 78499354 -39363273 + (TTTTA)n Simple_repeat Simple_repeat 1 20 0 1929 107 22 4 chr9 78499354 78499626 -39363001 - AluSc SINE Alu -32 277 1 1475 96 0 84 chr9 78499626 78499731 -39362896 + MER30 DNA MER1_type 153 230 0 2325 233 92 62 chr9 78499731 78499853 -39362774 - L2 LINE L2 -1010 2303 2103 533 309 83 23 chr9 78500161 78500604 -39362023 - L1ME4a LINE L1 -304 5817 5348 386 356 10 34 chr9 78500664 78500869 -39361758 - L1ME4a LINE L1 -904 5242 5043 2442 71 0 13 chr9 78500922 78501232 -39361395 - AluY SINE Alu -5 306 1 589 96 0 0 chr9 78501277 78501360 -39361267 - AluY SINE Alu -227 83 1 5885 105 2 41 chr9 78501401 78502299 -39360328 - MER4D LTR ERV1 -9 863 1 533 168 53 9 chr9 78502748 78502861 -39359766 + L1M4 LINE L1 3714 3831 -2315 3427 60 0 7 chr9 78502861 78503312 -39359315 + LTR7 LTR ERV1 1 448 -2 4740 87 16 82 chr9 78503314 78504135 -39358492 + HERVH LTR ERV1 1 767 -6946 340 98 0 0 chr9 78504135 78504186 -39358441 + HERVH LTR ERV1 684 734 -6979 3685 105 19 39 chr9 78504186 78504885 -39357742 + HERVH LTR ERV1 609 1251 -6462 253 132 57 0 chr9 78505282 78505335 -39357292 + L1MA3 LINE L1 6249 6304 -1 399 309 258 7 chr9 78507290 78507581 -39355046 - L2 LINE L2 0 3272 2909 2610 112 3 3 chr9 78507749 78508134 -39354493 + L1MB3 LINE L1 5748 6132 -51 214 48 0 48 chr9 78508364 78508406 -39354221 + (TATAA)n Simple_repeat Simple_repeat 5 44 0 235 320 85 35 chr9 78508928 78509128 -39353499 + L2 LINE L2 2808 3017 -255 181 371 29 14 chr9 78509196 78509266 -39353361 - L2 LINE L2 -86 3186 3116 337 358 173 35 chr9 78509380 78509606 -39353021 + L2 LINE L2 3016 3272 0 222 224 0 0 chr9 78509608 78509657 -39352970 + (TGGA)n Simple_repeat Simple_repeat 4 52 0 258 304 58 58 chr9 78510139 78510277 -39352350 - L2 LINE L2 -2 3311 3174 267 310 183 7 chr9 78510355 78510497 -39352130 - L3 LINE CR1 -3 1574 1408 574 296 169 0 chr9 78510593 78510836 -39351791 - L3 LINE CR1 -205 1372 1089 32 75 0 0 chr9 78510859 78510926 -39351701 + AT_rich Low_complexity Low_complexity 1 67 0 1954 235 137 32 chr9 78510956 78511893 -39350734 + L2 LINE L2 2284 3313 0 21 0 0 0 chr9 78513264 78513285 -39349342 + AT_rich Low_complexity Low_complexity 1 21 0 1205 144 34 10 chr9 78513306 78513514 -39349113 + AluJb SINE Alu 84 296 -16 304 267 9 29 chr9 78514504 78514609 -39348018 + MER5B DNA MER1_type 1 103 -75 775 179 8 0 chr9 78515182 78515316 -39347311 - MER20 DNA MER1_type -22 197 63 872 170 7 0 chr9 78515465 78515618 -39347009 + MER20 DNA MER1_type 64 217 -2 434 360 70 49 chr9 78515685 78516113 -39346514 - L2 LINE L2 -497 2817 2381 23 33 0 0 chr9 78516904 78516934 -39345693 + AT_rich Low_complexity Low_complexity 1 30 0 252 351 117 31 chr9 78517746 78517968 -39344659 - MIR SINE MIR -21 241 1 432 255 174 7 chr9 78518136 78518285 -39344342 + MER5A DNA MER1_type 14 187 -2 730 263 29 26 chr9 78518594 78518701 -39343926 - MIR SINE MIR -10 252 147 1974 143 10 13 chr9 78518701 78519008 -39343619 - AluJb SINE Alu -6 306 1 730 263 29 26 chr9 78519008 78519118 -39343509 - MIR SINE MIR -115 147 32 190 296 40 40 chr9 78519206 78519331 -39343296 - MIR SINE MIR -28 234 110 209 133 0 67 chr9 78519941 78519986 -39342641 + (TTTTA)n Simple_repeat Simple_repeat 2 43 0 535 290 0 0 chr9 78520834 78520958 -39341669 + L2 LINE L2 3190 3313 0 388 333 0 36 chr9 78520963 78521009 -39341618 - MIR SINE MIR -60 148 102 4106 77 0 31 chr9 78521009 78521581 -39341046 + MER41A LTR ERV1 1 554 0 388 333 0 36 chr9 78521581 78521672 -39340955 - MIR SINE MIR -106 102 16 669 253 17 11 chr9 78522770 78522944 -39339683 - MIR SINE MIR -14 248 74 264 255 51 82 chr9 78523146 78523244 -39339383 + L2 LINE L2 3174 3268 -4 343 315 52 72 chr9 78523483 78523902 -39338725 - LTR67 LTR ERVL -24 533 123 2324 65 3 3 chr9 78523996 78524288 -39338339 + AluY SINE Alu 1 292 -19 1515 149 71 68 chr9 78524707 78525015 -39337612 + AluJo SINE Alu 1 309 -3 997 204 81 0 chr9 78525027 78525248 -39337379 - MIR SINE MIR -11 251 13 313 214 32 32 chr9 78525785 78525911 -39336716 - L1MC4 LINE L1 -1 8041 7916 211 189 0 0 chr9 78525911 78525948 -39336679 + (TCCA)n Simple_repeat Simple_repeat 3 39 0 3253 197 21 42 chr9 78526057 78526939 -39335688 - L1ME2 LINE L1 -10 6154 5291 23 0 0 0 chr9 78527045 78527068 -39335559 + AT_rich Low_complexity Low_complexity 1 23 0 228 246 0 0 chr9 78527212 78527273 -39335354 + (TA)n Simple_repeat Simple_repeat 2 62 0 22 0 0 0 chr9 78527586 78527608 -39335019 + AT_rich Low_complexity Low_complexity 1 22 0 269 250 0 13 chr9 78527653 78527729 -39334898 - MLT1K LTR MaLR -7 581 507 643 336 74 59 chr9 78528998 78529796 -39332831 - L2 LINE L2 -375 2939 2130 22 35 0 0 chr9 78529844 78529873 -39332754 + AT_rich Low_complexity Low_complexity 1 29 0 556 279 196 23 chr9 78530849 78531068 -39331559 - MIR SINE MIR -1 261 5 2117 100 4 4 chr9 78531312 78531592 -39331035 + AluSp SINE Alu 1 280 -33 317 24 24 0 chr9 78531592 78531634 -39330993 + (GAAAA)n Simple_repeat Simple_repeat 4 46 0 232 255 0 0 chr9 78532200 78532251 -39330376 + (CATA)n Simple_repeat Simple_repeat 4 54 0 5447 90 36 2 chr9 78532615 78533418 -39329209 - L1PA15 LINE L1 -1 6164 5335 185 239 22 0 chr9 78534195 78534241 -39328386 + MIR SINE MIR 95 141 -121 2113 126 3 7 chr9 78535952 78536246 -39326381 - AluSx SINE Alu -17 295 3 796 181 0 0 chr9 78536248 78536375 -39326252 - FLAM_A SINE Alu -5 128 2 544 288 82 24 chr9 78537463 78537880 -39324747 - L1ME4a LINE L1 -44 6077 5637 314 284 166 26 chr9 78537915 78538228 -39324399 + HAL1 LINE L1 2151 2507 0 311 44 22 0 chr9 78540273 78540318 -39322309 + (CCCCG)n Simple_repeat Simple_repeat 1 46 0 21 36 0 0 chr9 78540374 78540402 -39322225 + GC_rich Low_complexity Low_complexity 1 28 0 282 29 0 0 chr9 78541665 78541700 -39320927 + (TG)n Simple_repeat Simple_repeat 1 35 0 271 271 57 14 chr9 78542259 78542329 -39320298 + MIR SINE MIR 1 73 -189 2808 13 0 6 chr9 78542372 78542687 -39319940 + AluYb8 SINE Alu 1 313 -5 587 264 58 43 chr9 78542689 78542897 -39319730 - MIR SINE MIR -11 251 41 230 266 125 31 chr9 78543088 78543152 -39319475 - L2 LINE L2 -48 3224 3155 1307 45 0 0 chr9 78543254 78543411 -39319216 + L1PA3 LINE L1 5999 6155 0 480 299 160 37 chr9 78543426 78543848 -39318779 + L2 LINE L2 2801 3271 -1 1871 151 7 20 chr9 78543882 78544187 -39318440 - AluJo SINE Alu -10 302 2 2068 195 25 66 chr9 78544287 78544816 -39317811 - MLT2B1 LTR ERVL -13 507 1 2160 110 3 3 chr9 78544818 78545110 -39317517 + AluSg SINE Alu 3 294 -16 220 222 0 19 chr9 78545448 78545502 -39317125 + GA-rich Low_complexity Low_complexity 4 56 0 762 137 0 50 chr9 78545828 78545967 -39316660 + FLAM_C SINE Alu 2 133 0 242 383 64 21 chr9 78546027 78546168 -39316459 - L2 LINE L2 -19 3253 3107 320 218 39 0 chr9 78546307 78546385 -39316242 - L1ME4a LINE L1 -3 6118 6038 294 205 212 0 chr9 78546700 78546886 -39315741 - L1MC4a LINE L1 -309 5812 5730 * 530 312 52 8 chr9 78546883 78547133 -39315494 - L1MC4a LINE L1 -2041 5767 5507 905 253 73 45 chr9 78547187 78547543 -39315084 + MLT1J2 LTR MaLR 85 450 0 313 307 48 5 chr9 78547716 78547905 -39314722 - L1MC4a LINE L1 -2190 3956 3760 413 276 61 49 chr9 78548062 78548388 -39314239 + HAL1 LINE L1 1148 1477 -1030 458 258 180 34 chr9 78548416 78548594 -39314033 + MIR SINE MIR 15 218 -44 362 252 72 18 chr9 78549051 78549162 -39313465 - L2 LINE L2 -1 3312 3196 1177 222 84 80 chr9 78549704 78550205 -39312422 + MLT1D LTR MaLR 3 505 0 268 283 101 0 chr9 78550206 78550305 -39312322 + MIR3 SINE MIR 14 122 -86 1607 148 3 50 chr9 78550543 78550840 -39311787 - AluJo SINE Alu -25 287 5 1944 163 10 3 chr9 78551803 78552110 -39310517 + AluJb SINE Alu 3 311 -1 204 369 28 0 chr9 78553130 78553209 -39309418 - MIR SINE MIR -102 106 28 960 265 59 30 chr9 78553848 78554308 -39308319 - MLT1L LTR MaLR -1 614 142 1761 142 44 14 chr9 78554562 78554858 -39307769 + AluJb SINE Alu 1 305 -7 347 250 78 0 chr9 78554992 78555108 -39307519 + MER117 DNA MER1_type 73 197 0 1412 253 57 15 chr9 78557151 78557938 -39304689 + L1MC/D LINE L1 4896 5718 -750 588 213 62 93 chr9 78557942 78558266 -39304361 + L1MC4a LINE L1 5626 5939 -1869 1890 134 0 25 chr9 78558317 78558601 -39304026 + AluSx SINE Alu 28 304 -8 321 299 85 45 chr9 78560748 78560925 -39301702 - MIR3 SINE MIR -7 201 18 2070 100 38 3 chr9 78561987 78562276 -39300351 + AluSx SINE Alu 1 299 -13 188 416 78 6 chr9 78562718 78562884 -39299743 - L2 LINE L2 -531 2783 2606 22 35 0 0 chr9 78563507 78563536 -39299091 + AT_rich Low_complexity Low_complexity 1 29 0 356 303 91 55 chr9 78564838 78565112 -39297515 + L1M2 LINE L1 753 1036 -5813 1094 167 97 51 chr9 78566003 78566224 -39296403 + MER96B DNA MER1_type? 142 378 -39 2288 181 107 17 chr9 78566224 78566659 -39295968 + MLT2B1 LTR ERVL 3 486 -34 215 61 30 0 chr9 78566659 78566692 -39295935 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 2288 181 107 17 chr9 78566692 78566731 -39295896 + MLT2B1 LTR ERVL 486 520 0 1094 167 97 51 chr9 78566731 78566766 -39295861 + MER96B DNA MER1_type? 378 410 -7 351 265 110 22 chr9 78566807 78566943 -39295684 + MLT1I LTR MaLR 232 379 -30 845 232 17 0 chr9 78567048 78567225 -39295402 - MER58A DNA MER1_type 0 224 45 2048 95 0 0 chr9 78567233 78567495 -39295132 + AluSx SINE Alu 5 266 -46 418 260 35 58 chr9 78567522 78567695 -39294932 - MLT1I LTR MaLR -170 239 71 440 303 162 0 chr9 78567890 78568075 -39294552 - MIR SINE MIR -38 224 10 819 159 37 25 chr9 78568611 78568774 -39293853 + MLT1C LTR MaLR 2 166 -301 1837 174 63 28 chr9 78569033 78569430 -39293197 - MLT1C LTR MaLR -56 411 1 231 125 0 0 chr9 78569901 78569941 -39292686 + (ATG)n Simple_repeat Simple_repeat 3 42 0 21 0 0 0 chr9 78570075 78570096 -39292531 + AT_rich Low_complexity Low_complexity 1 21 0 198 71 0 0 chr9 78570467 78570495 -39292132 + (TA)n Simple_repeat Simple_repeat 1 28 0 * 207 0 0 0 chr9 78570494 78570517 -39292110 + (CA)n Simple_repeat Simple_repeat 2 24 0 238 197 42 0 chr9 78570576 78570647 -39291980 + (TA)n Simple_repeat Simple_repeat 1 74 0 222 105 0 0 chr9 78570712 78570750 -39291877 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 1920 104 43 29 chr9 78570752 78571031 -39291596 - AluSx SINE Alu -29 283 1 306 299 45 32 chr9 78573556 78573713 -39288914 + L1ME1 LINE L1 5266 5424 -697 317 307 178 25 chr9 78574268 78574470 -39288157 - MIR SINE MIR 0 262 30 2282 140 19 14 chr9 78576016 78576368 -39286259 + L1MC1 LINE L1 5968 6324 -9 2218 117 3 19 chr9 78576368 78576685 -39285942 + AluSx SINE Alu 1 312 0 2282 140 19 14 chr9 78576685 78576696 -39285931 + L1MC1 LINE L1 6324 6333 0 248 167 0 74 chr9 78576697 78576751 -39285876 + L2 LINE L2 3264 3313 0 1114 260 26 32 chr9 78576801 78577178 -39285449 + L1ME1 LINE L1 5789 6163 -3 315 338 78 7 chr9 78578764 78578906 -39283721 - MIR3 SINE MIR -51 157 6 277 121 103 17 chr9 78579080 78579138 -39283489 + L1MC1 LINE L1 6271 6333 0 268 196 0 0 chr9 78579139 78579190 -39283437 + L2 LINE L2 3263 3313 0 746 218 36 96 chr9 78579248 78579387 -39283240 + L1ME1 LINE L1 5789 5902 -264 3821 102 5 30 chr9 78579387 78579953 -39282674 - L1PB1 LINE L1 -3 6148 5597 746 218 36 96 chr9 78579953 78580116 -39282511 + L1ME1 LINE L1 5902 6073 -93 2018 211 64 19 chr9 78580306 78580775 -39281852 - MLT1D LTR MaLR -10 495 6 23 0 0 0 chr9 78581244 78581267 -39281360 + AT_rich Low_complexity Low_complexity 1 23 0 4650 55 0 4 chr9 78581342 78581885 -39280742 - L1PA7 LINE L1 -1 6153 5613 465 244 31 0 chr9 78581901 78582028 -39280599 - L1MD3 LINE L1 -34 7961 7831 471 316 12 47 chr9 78582511 78582682 -39279945 - MIR3 SINE MIR -10 198 34 3204 159 63 80 chr9 78582703 78583406 -39279221 + LTR8 LTR ERV1 1 691 0 264 373 0 16 chr9 78583566 78583692 -39278935 - L2 LINE L2 -674 2640 2517 2185 226 81 28 chr9 78584561 78585163 -39277464 + L1ME3 LINE L1 5521 6154 -8 5424 130 46 15 chr9 78586167 78587083 -39275544 - L1MA7 LINE L1 0 6291 5348 585 305 39 37 chr9 78587180 78587668 -39274959 - L1M4 LINE L1 -1301 4845 4357 256 330 0 0 chr9 78587698 78587786 -39274841 - L1MC4 LINE L1 -1340 6702 6615 465 290 112 75 chr9 78587997 78588515 -39274112 - L1M4 LINE L1 -2098 4048 3512 240 35 0 0 chr9 78588600 78588629 -39273998 + (TG)n Simple_repeat Simple_repeat 2 30 0 642 161 173 0 chr9 78588731 78588893 -39273734 + L1M4 LINE L1 3070 3259 -2887 2641 95 80 25 chr9 78589163 78589562 -39273065 - L1PA11 LINE L1 0 6174 5754 676 283 91 68 chr9 78589586 78589668 -39272959 - L1M4 LINE L1 -3129 3017 2938 2107 116 61 12 chr9 78589668 78590012 -39272615 - L1MA4 LINE L1 -6 6294 5934 676 283 91 68 chr9 78590012 78590664 -39271963 - L1M4 LINE L1 -3208 2938 2266 2863 217 120 10 chr9 78590709 78591761 -39270866 - L1ME3 LINE L1 -2 6160 4981 1265 228 39 89 chr9 78591741 78592223 -39270404 - L1ME3 LINE L1 -1720 4426 3969 * 948 209 5 43 chr9 78592260 78592435 -39270192 - AluJo SINE Alu -110 202 35 2227 130 55 17 chr9 78592435 78592796 -39269831 + THE1C LTR MaLR 1 375 0 948 209 5 43 chr9 78592796 78592830 -39269797 - AluJo SINE Alu -277 35 1 1159 256 114 17 chr9 78592831 78593397 -39269230 - L1ME3 LINE L1 -2166 3980 3288 1880 109 69 7 chr9 78593397 78593673 -39268954 - AluSx SINE Alu -19 293 1 1159 256 114 17 chr9 78593673 78593917 -39268710 - L1ME3 LINE L1 -2858 3288 3069 258 81 0 0 chr9 78594016 78594053 -39268574 + (CA)n Simple_repeat Simple_repeat 2 38 0 556 215 0 0 chr9 78594621 78594728 -39267899 + FLAM_A SINE Alu 32 138 -4 300 294 33 22 chr9 78595257 78595349 -39267278 - L2 LINE L2 -1 3271 3179 282 29 0 0 chr9 78595531 78595566 -39267061 + (TG)n Simple_repeat Simple_repeat 1 35 0 236 269 0 13 chr9 78596403 78596481 -39266146 + (CA)n Simple_repeat Simple_repeat 1 77 0 264 59 0 0 chr9 78597190 78597224 -39265403 + (CGG)n Simple_repeat Simple_repeat 1 34 0 300 158 0 0 chr9 78601694 78601751 -39260876 + (TG)n Simple_repeat Simple_repeat 2 58 0 351 65 0 0 chr9 78602757 78602803 -39259824 + (CCA)n Simple_repeat Simple_repeat 1 46 0 342 264 235 55 chr9 78602834 78603281 -39259346 + L1M2 LINE L1 464 1449 -5400 251 258 81 16 chr9 78604259 78604321 -39258306 + MIR SINE MIR 19 84 -178 311 343 8 30 chr9 78604353 78604487 -39258140 - MIR SINE MIR -112 150 20 276 289 30 44 chr9 78604694 78604829 -39257798 - MIR SINE MIR -59 149 17 207 286 158 29 chr9 78605069 78605243 -39257384 + MIR SINE MIR 20 212 -50 182 264 0 88 chr9 78608768 78608859 -39253768 + MIR3 SINE MIR 10 92 -116 257 257 148 20 chr9 78609240 78609341 -39253286 - MIR SINE MIR -11 251 138 252 0 0 0 chr9 78609346 78609374 -39253253 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 700 251 15 26 chr9 78609814 78610009 -39252618 + MIR SINE MIR 31 223 -39 453 261 37 30 chr9 78610095 78610229 -39252398 - MIR SINE MIR -83 179 45 1270 255 75 26 chr9 78610943 78611367 -39251260 + L3 LINE CR1 646 1090 -487 2089 135 40 0 chr9 78611607 78612037 -39250590 - L1M1 LINE L1 -682 5618 5171 482 239 119 8 chr9 78612188 78612322 -39250305 - MIR3 SINE MIR -23 185 37 34 72 0 0 chr9 78612365 78612434 -39250193 + AT_rich Low_complexity Low_complexity 1 69 0 235 370 91 13 chr9 78613325 78613479 -39249148 + MIR3 SINE MIR 40 205 -3 509 281 15 65 chr9 78613522 78613721 -39248906 + MER5A DNA MER1_type 1 189 0 535 267 61 12 chr9 78613825 78613990 -39248637 - L2 LINE L2 -4 3309 3137 187 313 38 12 chr9 78668642 78668722 -39193905 - MER5A DNA MER1_type 0 189 108 5218 206 148 40 chr9 78669318 78673395 -39189232 - L1 LINE L1 -2837 4269 70 231 273 73 9 chr9 78673517 78673627 -39189000 - HAL1 LINE L1 -962 1545 1429 702 318 77 29 chr9 78673671 78674363 -39188264 - L1MEd LINE L1 -4862 1257 533 1231 171 67 44 chr9 78674858 78675173 -39187454 + MER33 DNA MER1_type 2 323 -1 593 333 89 0 chr9 78675178 78675415 -39187212 + MIR SINE MIR 5 262 0 2682 10 0 0 chr9 78676616 78676907 -39185720 + AluYb8 SINE Alu 26 316 -2 565 313 75 5 chr9 78678233 78678434 -39184193 + L2 LINE L2 2653 2867 -447 326 341 72 29 chr9 78678622 78678760 -39183867 + L2 LINE L2 3121 3264 -8 392 267 30 0 chr9 78678852 78678953 -39183674 - MIR SINE MIR -70 192 89 398 269 29 0 chr9 78680765 78680869 -39181758 + MIR SINE MIR 156 262 0 685 139 47 16 chr9 78681140 78681269 -39181358 - MER94 DNA DNA -1 133 1 248 347 0 0 chr9 78681480 78681552 -39181075 + L3 LINE CR1 192 263 -1314 214 359 55 60 chr9 78682007 78682224 -39180403 + L2 LINE L2 3028 3243 -29 318 375 33 0 chr9 78682905 78683025 -39179602 - L2 LINE L2 0 3272 3149 1725 218 110 80 chr9 78683176 78684156 -39178471 - L1ME3 LINE L1 -1 6161 5153 681 128 0 0 chr9 78684200 78684302 -39178325 - FRAM SINE Alu -12 164 63 1209 247 72 21 chr9 78684304 78684777 -39177850 - L1ME3 LINE L1 -1040 5106 4610 859 139 49 67 chr9 78685824 78685872 -39176755 - L1MB7 LINE L1 0 6184 6137 1511 172 90 8 chr9 78685872 78686140 -39176487 - AluJb SINE Alu -22 290 1 859 139 49 67 chr9 78686140 78686218 -39176409 - L1MB7 LINE L1 -47 6137 6059 2083 117 0 10 chr9 78686218 78686509 -39176118 - AluSc SINE Alu -21 288 1 859 139 49 67 chr9 78686509 78686604 -39176023 - L1MB7 LINE L1 -125 6059 5966 304 321 146 26 chr9 78686662 78686930 -39175697 + L2 LINE L2 2102 2401 -913 2380 92 3 6 chr9 78687717 78688031 -39174596 + AluSq SINE Alu 1 313 0 952 130 245 0 chr9 78688950 78689134 -39173493 - MER46A DNA MER2_type -1 235 7 1164 224 126 0 chr9 78689849 78690135 -39172492 + L1MDa LINE L1 17 338 -6202 189 0 0 0 chr9 78690473 78690494 -39172133 + (TAA)n Simple_repeat Simple_repeat 1 21 0 2248 221 78 25 chr9 78690645 78691283 -39171344 + L1ME3A LINE L1 5392 6063 -107 1310 204 93 46 chr9 78691285 78691372 -39171255 + MER58B DNA MER1_type 1 83 -2337 2172 89 6 22 chr9 78691372 78691686 -39170941 - AluSx SINE Alu -3 309 1 1310 204 93 46 chr9 78691686 78691921 -39170706 + MER58B DNA MER1_type 83 338 -3 1556 205 50 15 chr9 78691930 78692272 -39170355 - MLT1A1 LTR MaLR -11 354 1 1961 133 56 15 chr9 78692782 78693106 -39169521 - MER1B DNA MER1_type 0 337 1 191 271 0 17 chr9 78693128 78693187 -39169440 - MER5A DNA MER1_type 0 189 132 1448 161 0 0 chr9 78693590 78693813 -39168814 - AluJo SINE Alu -3 309 87 869 269 23 34 chr9 78694264 78694528 -39168099 - MIR SINE MIR 0 262 2 358 261 31 117 chr9 78695050 78695272 -39167355 + MIR3 SINE MIR 3 205 -3 399 254 53 26 chr9 78695748 78695862 -39166765 + L2 LINE L2 3189 3305 -8 838 282 42 17 chr9 78696011 78696298 -39166329 - L2 LINE L2 0 3313 3020 785 159 0 8 chr9 78696359 78696491 -39166136 + FLAM_C SINE Alu 1 131 -2 187 313 38 12 chr9 78697376 78697456 -39165171 + L2 LINE L2 3186 3267 -5 1941 206 44 24 chr9 78698169 78698625 -39164002 + LTR40c LTR ERVL 1 465 0 589 237 126 20 chr9 78699492 78699690 -39162937 + MIR SINE MIR 18 236 -26 1827 145 6 60 chr9 78700525 78700842 -39161785 - AluJo SINE Alu -12 300 1 1838 148 4 0 chr9 78700970 78701247 -39161380 + AluSx SINE Alu 1 278 -34 378 0 0 0 chr9 78701250 78701292 -39161335 + (CAA)n Simple_repeat Simple_repeat 1 42 0 749 214 35 15 chr9 78701305 78701506 -39161121 + L1MC4a LINE L1 5739 5943 -1865 250 270 0 0 chr9 78701519 78701582 -39161045 + (TA)n Simple_repeat Simple_repeat 2 64 0 286 206 168 19 chr9 78701616 78701723 -39160904 + L1MC4a LINE L1 6053 6175 -1633 1577 261 70 55 chr9 78701963 78702079 -39160548 + L1MC/D LINE L1 3349 3462 -2684 573 242 8 0 chr9 78702079 78702199 -39160428 + FLAM_A SINE Alu 1 121 -12 1577 261 70 55 chr9 78702199 78702976 -39159651 + L1MC/D LINE L1 3462 4256 -1890 378 263 183 0 chr9 78703537 78703723 -39158904 + L1MC/D LINE L1 5255 5474 -2334 204 267 0 0 chr9 78705570 78705615 -39157012 + (TATATG)n Simple_repeat Simple_repeat 4 48 0 301 168 95 32 chr9 78705618 78705713 -39156914 - L1ME4a LINE L1 -39 6082 5982 347 186 47 0 chr9 78705713 78705799 -39156828 + HsTC2 DNA Tc2 656 745 -1153 * 751 216 168 34 chr9 78705796 78706093 -39156534 + HsTC2 DNA Tc2 1273 1785 -113 2605 165 43 17 chr9 78706096 78706905 -39155722 + L1M2 LINE L1 4959 5778 -522 2438 80 0 0 chr9 78706905 78707205 -39155422 + AluSc SINE Alu 1 300 -9 2605 165 43 17 chr9 78707205 78707231 -39155396 + L1M2 LINE L1 5778 5802 -498 1080 109 26 0 chr9 78707233 78707389 -39155238 + MER41B LTR ERV1 476 635 0 4238 128 30 11 chr9 78707389 78708127 -39154500 + MER41B-int LTR ERV1 1 1429 -5317 3968 139 67 13 chr9 78708123 78709487 -39153140 + MER41B-int LTR ERV1 1188 2864 -3082 * 9445 96 49 4 chr9 78709480 78710881 -39151746 + MER41B-int LTR ERV1 4023 5486 -460 1489 117 19 0 chr9 78710877 78711091 -39151536 + MER41B-int LTR ERV1 5729 5946 0 * 1165 167 32 23 chr9 78711091 78711120 -39151507 + HERVK14 LTR ERVK 5758 5788 -157 3403 111 35 20 chr9 78711120 78711659 -39150968 + MER41B LTR ERV1 1 547 -88 225 139 0 0 chr9 78711663 78711706 -39150921 + (A)n Simple_repeat Simple_repeat 1 43 0 365 194 14 14 chr9 78711733 78711805 -39150822 - L1PA16 LINE L1 -1547 4599 4528 * 3347 171 5 45 chr9 78711798 78712511 -39150116 + L1PA16 LINE L1 4616 5283 -883 2080 120 3 0 chr9 78712511 78712803 -39149824 + AluSq SINE Alu 21 313 0 3347 171 5 45 chr9 78712803 78713342 -39149285 + L1PA16 LINE L1 5283 5842 -324 * 3653 184 4 41 chr9 78712818 78713342 -39149285 + L1MA5 LINE L1 5317 5804 -496 2323 147 5 34 chr9 78713342 78713777 -39148850 + L1PA16 LINE L1 5743 6166 0 3653 184 4 41 chr9 78713777 78714029 -39148598 + L1MA5 LINE L1 5804 6064 -236 * 5142 180 21 11 chr9 78714010 78714934 -39147693 + L1MA2 LINE L1 11 943 -6622 * 15963 154 23 23 chr9 78714928 78718364 -39144263 + L1MA2 LINE L1 2732 6166 -1557 506 86 0 25 chr9 78718364 78718445 -39144182 - MADE1 DNA Mariner 0 80 2 15963 154 23 23 chr9 78718445 78718485 -39144142 + L1MA2 LINE L1 6166 6204 -1519 2194 112 0 0 chr9 78718485 78718804 -39143823 + AluSc SINE Alu 1 309 0 15963 154 23 23 chr9 78718804 78720075 -39142552 + L1MA2 LINE L1 6204 7473 -250 2612 61 0 0 chr9 78720075 78720386 -39142241 + AluY SINE Alu 1 311 0 15963 154 23 23 chr9 78720386 78720570 -39142057 + L1MA2 LINE L1 7473 7672 -51 2197 110 0 0 chr9 78720570 78720870 -39141757 + AluSx SINE Alu 1 300 -12 15963 154 23 23 chr9 78720870 78720920 -39141707 + L1MA2 LINE L1 7672 7720 -3 694 138 34 15 chr9 78720929 78721128 -39141499 + L1MA5 LINE L1 6038 6297 -3 384 286 89 0 chr9 78721318 78721430 -39141197 - L2 LINE L2 0 3313 3192 373 181 64 32 chr9 78722126 78722220 -39140407 + MIR SINE MIR 47 143 -119 326 338 49 13 chr9 78722234 78722401 -39140226 + L2 LINE L2 2900 3071 -201 223 261 57 57 chr9 78722488 78722576 -39140051 + L2 LINE L2 3224 3311 -2 424 243 81 25 chr9 78723010 78723245 -39139382 + L1ME1 LINE L1 4187 4434 -1712 811 241 194 29 chr9 78723256 78723601 -39139026 + L1MD3 LINE L1 7586 7987 -8 2630 229 49 13 chr9 78723607 78724388 -39138239 + L1ME1 LINE L1 4382 5190 -956 * 2772 178 19 38 chr9 78724385 78725175 -39137452 + L1MB2 LINE L1 4706 5483 -697 381 96 26 3 chr9 78725179 78725267 -39137360 + FRAM/FAM SINE Alu 22 75 -100 1317 31 0 6 chr9 78725267 78725430 -39137197 + L1PA4 LINE L1 5991 6152 -3 3624 160 29 15 chr9 78725451 78726114 -39136513 + L1MB2 LINE L1 5477 6148 -23 1558 235 44 62 chr9 78726129 78726225 -39136402 + L1ME1 LINE L1 5197 5293 -873 1341 190 59 17 chr9 78726225 78726514 -39136113 + AluJb SINE Alu 1 301 -11 1558 235 44 62 chr9 78726514 78727435 -39135192 + L1ME1 LINE L1 5293 6161 -5 349 276 83 55 chr9 78728332 78728477 -39134150 + MIR3 SINE MIR 5 153 -55 314 44 0 22 chr9 78729403 78729448 -39133179 + (GAAAA)n Simple_repeat Simple_repeat 2 45 0 692 174 0 15 chr9 78730001 78730133 -39132494 - AluJb SINE Alu 0 312 183 1554 149 139 16 chr9 78730507 78730816 -39131811 - MER7A DNA MER2_type 0 346 2 1367 157 30 4 chr9 78731629 78731859 -39130768 + MER46A DNA MER2_type 1 236 0 219 322 67 11 chr9 78731988 78732078 -39130549 - L3 LINE CR1 -23 1554 1460 460 268 173 6 chr9 78732120 78732288 -39130339 + MIR SINE MIR 20 215 -47 1322 119 108 31 chr9 78732288 78732460 -39130167 + L1MA3 LINE L1 6022 6222 -83 2192 107 10 3 chr9 78732460 78732768 -39129859 - AluSx SINE Alu -2 310 1 1322 119 108 31 chr9 78732768 78732855 -39129772 + L1MA3 LINE L1 6222 6301 -4 455 271 49 0 chr9 78733216 78733338 -39129289 + MIR3 SINE MIR 38 165 -43 744 321 50 75 chr9 78733483 78734239 -39128388 - L2 LINE L2 0 3272 2544 257 295 143 0 chr9 78734357 78734462 -39128165 - L2 LINE L2 -27 3286 3167 1852 163 3 3 chr9 78735179 78735473 -39127154 - AluJo SINE Alu -18 294 1 529 239 89 44 chr9 78736013 78736193 -39126434 + MER5A DNA MER1_type 1 188 -1 1694 173 0 32 chr9 78736501 78736813 -39125814 + AluJo SINE Alu 1 302 -10 2251 80 0 14 chr9 78738258 78738545 -39124082 + AluSc SINE Alu 1 283 -26 485 203 6 0 chr9 78738556 78738733 -39123894 + (TA)n Simple_repeat Simple_repeat 2 179 0 362 217 38 38 chr9 78738970 78739076 -39123551 + LTR48B LTR ERV1 1 106 -538 * 1482 203 105 35 chr9 78739045 78739457 -39123170 + MER39 LTR ERV1 260 585 0 602 124 10 0 chr9 78739712 78739809 -39122818 - L1MA4 LINE L1 -84 6216 6119 2027 142 3 7 chr9 78739888 78740191 -39122436 + AluJo SINE Alu 1 302 -10 238 369 81 7 chr9 78741253 78741402 -39121225 + L2 LINE L2 3152 3311 -2 207 295 105 21 chr9 78741620 78741715 -39120912 - L3 LINE CR1 -18 1559 1457 582 208 19 0 chr9 78741743 78741849 -39120778 + Tigger3(Golem) DNA MER2_type 1 108 -2921 3888 127 85 1 chr9 78741849 78742533 -39120094 + Tigger3(Golem) DNA MER2_type 2285 3025 -4 929 131 89 0 chr9 78742533 78742724 -39119903 + L1MA9 LINE L1 6099 6306 -6 522 296 148 0 chr9 78743064 78743226 -39119401 + MER5A DNA MER1_type 4 189 0 7376 20 0 356 chr9 78744254 78746405 -39116222 + SVA Other Other 1 1386 0 857 137 0 0 chr9 78746580 78746697 -39115930 + AluSg/x SINE Alu 170 286 -26 339 224 60 99 chr9 78747718 78747919 -39114708 + L1MC5 LINE L1 7247 7439 -522 385 205 143 36 chr9 78747932 78748044 -39114583 - LTR16C LTR ERVL 0 491 368 1170 139 0 0 chr9 78748191 78748356 -39114271 - AluJb SINE Alu -11 301 137 2220 110 0 3 chr9 78748735 78749034 -39113593 + AluSq SINE Alu 1 298 -15 2037 100 7 0 chr9 78749625 78749895 -39112732 - AluSq SINE Alu -18 295 24 536 268 73 18 chr9 78750497 78750661 -39111966 + MIR3 SINE MIR 28 200 -8 688 216 154 13 chr9 78750880 78751107 -39111520 + MER112 DNA MER1_type 1 259 -1 284 283 103 33 chr9 78751116 78751300 -39111327 - MARNA DNA Mariner -117 469 273 232 214 0 0 chr9 78751300 78751342 -39111285 + Charlie3 DNA MER1_type 1 42 -2668 415 153 141 0 chr9 78751342 78751427 -39111200 + Charlie3 DNA MER1_type 2616 2712 0 31905 63 16 10 chr9 78751451 78755273 -39107354 + HERVL LTR ERVL 1562 5357 -297 2142 121 7 0 chr9 78755273 78755570 -39107057 + AluSx SINE Alu 1 299 -13 2162 128 3 0 chr9 78755572 78755876 -39106751 + AluSx SINE Alu 3 307 -5 31905 63 16 10 chr9 78755876 78756116 -39106511 + HERVL LTR ERVL 5357 5654 0 3052 97 51 2 chr9 78756116 78756511 -39106116 + MLT2A2 LTR ERVL 1 420 -33 399 21 0 0 chr9 78756511 78756559 -39106068 + (CA)n Simple_repeat Simple_repeat 2 49 0 3052 97 51 2 chr9 78756559 78756595 -39106032 + MLT2A2 LTR ERVL 420 453 0 31 26 0 0 chr9 78756684 78756722 -39105905 + AT_rich Low_complexity Low_complexity 1 38 0 1569 165 44 14 chr9 78756758 78757055 -39105572 + AluJo SINE Alu 1 306 -6 316 279 53 118 chr9 78757283 78757545 -39105082 - L3 LINE CR1 -75 1502 1258 574 304 52 66 chr9 78758115 78758649 -39103978 + L1MC4a LINE L1 2192 2676 -3539 480 283 107 42 chr9 78758676 78759389 -39103238 + L1MC4a LINE L1 3954 4717 -1498 661 67 0 0 chr9 78759393 78759483 -39103144 + L1PA8 LINE L1 6078 6167 -5 811 262 29 0 chr9 78759641 78759813 -39102814 + MER8 DNA MER2_type 1 177 -62 433 111 0 16 chr9 78759860 78759923 -39102704 - Tigger2 DNA MER2_type -2656 62 1 888 230 27 14 chr9 78760279 78760501 -39102126 + L1MC4a LINE L1 5737 5961 -1916 2351 97 3 0 chr9 78762715 78763014 -39099613 + AluSq SINE Alu 1 300 -13 392 321 104 7 chr9 78763645 78763858 -39098769 - MIR SINE MIR -21 241 6 274 212 12 71 chr9 78764032 78764117 -39098510 - MIR SINE MIR -59 203 124 181 324 206 0 chr9 78764170 78764238 -39098389 - MIR SINE MIR -85 123 42 183 169 0 153 chr9 78764561 78764620 -39098007 - L2 LINE L2 0 3313 3264 * 326 309 27 80 chr9 78764586 78764777 -39097850 - MIR SINE MIR -10 252 74 328 169 15 0 chr9 78764924 78764989 -39097638 + L1ME4a LINE L1 5944 6009 -112 22 0 0 0 chr9 78765257 78765279 -39097348 + AT_rich Low_complexity Low_complexity 1 22 0 681 321 0 5 chr9 78765367 78765557 -39097070 + L2 LINE L2 2833 3021 -292 2094 198 65 36 chr9 78766101 78766395 -39096232 + Tigger7 DNA MER2_type 56 340 -2247 2259 108 0 3 chr9 78766395 78766701 -39095926 + AluSx SINE Alu 1 305 -7 2094 198 65 36 chr9 78766701 78767029 -39095598 + Tigger7 DNA MER2_type 340 2587 0 2264 108 0 0 chr9 78767564 78767859 -39094768 + AluSx SINE Alu 1 295 -17 26 0 0 0 chr9 78767984 78768010 -39094617 + AT_rich Low_complexity Low_complexity 1 26 0 379 228 269 21 chr9 78768846 78768991 -39093636 - MER5A DNA MER1_type 0 189 9 663 296 84 31 chr9 78769808 78770190 -39092437 + L1ME LINE L1 5338 5657 -464 1883 139 4 0 chr9 78770459 78770739 -39091888 + AluJb SINE Alu 1 281 -31 1312 249 144 27 chr9 78770787 78771349 -39091278 + L1MC5 LINE L1 5288 5915 -1893 2241 102 0 7 chr9 78771473 78771776 -39090851 + AluSx SINE Alu 1 301 -11 1680 154 24 34 chr9 78771791 78772089 -39090538 + AluJb SINE Alu 8 302 -10 28 61 0 0 chr9 78772186 78772235 -39090392 + AT_rich Low_complexity Low_complexity 1 49 0 1134 214 51 43 chr9 78772295 78772687 -39089940 + L1MC5 LINE L1 7333 7727 -234 340 237 141 59 chr9 78772695 78772830 -39089797 - MER5B DNA MER1_type -32 146 1 282 229 12 0 chr9 78773443 78773526 -39089101 + (TA)n Simple_repeat Simple_repeat 1 84 0 392 248 14 4 chr9 78774861 78774953 -39087674 + MIR SINE MIR 24 114 -103 206 152 0 43 chr9 78775975 78776021 -39086606 + (GGCTG)n Simple_repeat Simple_repeat 2 45 0 244 326 12 12 chr9 78777355 78777441 -39085186 - MIR SINE MIR -158 104 19 350 250 0 0 chr9 78777588 78777652 -39084975 - L2 LINE L2 -5 3267 3204 890 66 49 23 chr9 78777666 78778192 -39084435 + (TA)n Simple_repeat Simple_repeat 1 722 0 294 217 100 0 chr9 78778298 78778358 -39084269 + L2 LINE L2 3248 3313 0 257 360 40 0 chr9 78778394 78778494 -39084133 - MIR SINE MIR -83 125 22 493 274 45 38 chr9 78778858 78779015 -39083612 + MER102b DNA MER1_type 179 336 -5 241 203 16 62 chr9 78779116 78779180 -39083447 - L3 LINE CR1 -106 1471 1411 1595 112 4 29 chr9 78779185 78779427 -39083200 - AluSg/x SINE Alu -5 305 70 1739 170 62 0 chr9 78779656 78779944 -39082683 + 7SLRNA srpRNA srpRNA 1 306 -14 2261 100 0 0 chr9 78779959 78780250 -39082377 - AluSx SINE Alu -21 291 1 912 212 6 0 chr9 78780258 78780428 -39082199 - AluSg/x SINE Alu -13 297 127 2012 135 0 3 chr9 78780442 78780738 -39081889 + AluSx SINE Alu 1 295 -17 471 107 0 0 chr9 78780751 78780826 -39081801 + (GGGGA)n Simple_repeat Simple_repeat 1 75 0 872 148 0 0 chr9 78780826 78780948 -39081679 - FLAM_C SINE Alu -21 122 1 181 225 191 56 chr9 78781222 78781311 -39081316 - MIR SINE MIR -55 153 53 561 213 0 0 chr9 78781354 78781462 -39081165 - FLAM_C SINE Alu -35 108 1 23 0 0 0 chr9 78782300 78782323 -39080304 + AT_rich Low_complexity Low_complexity 1 23 0 1025 337 137 21 chr9 78782632 78783581 -39079046 + L2 LINE L2 713 1771 -1543 316 268 117 78 chr9 78783722 78783901 -39078726 - MLT1J LTR MaLR -89 422 237 374 293 38 25 chr9 78783937 78784094 -39078533 - MLT1J LTR MaLR -351 160 2 399 246 123 37 chr9 78784175 78784362 -39078265 - L1ME3A LINE L1 -6 6164 5962 785 292 169 38 chr9 78784495 78785004 -39077623 + L2 LINE L2 2720 3313 0 210 71 0 0 chr9 78785078 78785106 -39077521 + (AATTG)n Simple_repeat Simple_repeat 5 32 0 615 311 71 17 chr9 78786211 78786449 -39076178 + MIR SINE MIR 1 251 -11 2384 63 0 3 chr9 78786753 78787064 -39075563 - AluSp SINE Alu 0 310 1 699 215 133 56 chr9 78787277 78787510 -39075117 - MIR SINE MIR 0 262 12 963 202 75 52 chr9 78787661 78787968 -39074659 - Charlie4a DNA MER1_type -6 502 189 379 304 80 11 chr9 78788010 78788157 -39074470 - MIR SINE MIR -63 145 2 1992 105 60 0 chr9 78789075 78789369 -39073258 - AluSx SINE Alu 0 310 1 1503 97 35 18 chr9 78789666 78789892 -39072735 + MER30 DNA MER1_type 1 230 0 315 0 0 0 chr9 78790656 78790691 -39071936 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1600 98 59 4 chr9 78790694 78790950 -39071677 - L1MA6 LINE L1 -6 6294 6025 2436 213 68 80 chr9 78791200 78791489 -39071138 - L1ME1 LINE L1 -5 6555 6264 2061 138 0 13 chr9 78791489 78791801 -39070826 - AluJb SINE Alu -2 310 3 2436 213 68 80 chr9 78791801 78792394 -39070233 - L1ME1 LINE L1 -296 6264 5684 6476 29 13 1 chr9 78792410 78793178 -39069449 - L1PA5 LINE L1 -8 6146 5370 2015 152 3 16 chr9 78793189 78793505 -39069122 - AluSx SINE Alu 0 312 1 957 179 62 26 chr9 78793523 78793796 -39068831 - L1ME1 LINE L1 -849 5691 5409 23 0 0 0 chr9 78794696 78794719 -39067908 + GC_rich Low_complexity Low_complexity 1 23 0 257 153 0 0 chr9 78794773 78794832 -39067795 - L1ME1 LINE L1 -1118 5422 5364 1407 199 109 163 chr9 78794833 78795167 -39067460 + MLT1A1 LTR MaLR 1 351 -39 837 152 0 0 chr9 78795167 78795299 -39067328 - FLAM_C SINE Alu -1 132 1 2190 100 4 0 chr9 78795304 78795606 -39067021 - AluSq SINE Alu 0 303 1 1407 199 109 163 chr9 78795606 78795676 -39066951 + MLT1A1 LTR MaLR 355 390 0 228 86 0 0 chr9 78795701 78795736 -39066891 + (TTTTTG)n Simple_repeat Simple_repeat 6 40 0 22 0 0 0 chr9 78795763 78795785 -39066842 + AT_rich Low_complexity Low_complexity 1 22 0 2141 103 0 0 chr9 78795785 78796056 -39066571 - AluSq SINE Alu -40 273 3 990 247 37 0 chr9 78796059 78796355 -39066272 - L1ME1 LINE L1 -1224 5316 5010 27 29 0 0 chr9 78796407 78796441 -39066186 + AT_rich Low_complexity Low_complexity 1 34 0 1064 200 38 34 chr9 78796445 78796661 -39065966 - MLT1E1 LTR MaLR 0 654 435 2126 92 3 10 chr9 78796661 78796953 -39065674 - AluY SINE Alu -19 292 3 1064 200 38 34 chr9 78796953 78796971 -39065656 - MLT1E1 LTR MaLR -219 435 419 1805 173 58 9 chr9 78798185 78798515 -39064112 - MLT1E1 LTR MaLR -308 346 1 2787 236 93 38 chr9 78798519 78799670 -39062957 - L1ME1 LINE L1 -2685 3855 2769 2454 80 0 3 chr9 78799670 78799981 -39062646 - AluY SINE Alu -1 310 1 2787 236 93 38 chr9 78799981 78800183 -39062444 - L1ME1 LINE L1 -3771 2769 2580 3586 178 24 23 chr9 78800183 78800930 -39061697 - L1MB8 LINE L1 0 6178 5431 1942 131 0 11 chr9 78800930 78801204 -39061423 - AluSx SINE Alu -39 273 3 2787 236 93 38 chr9 78801204 78801275 -39061352 - L1ME1 LINE L1 -3960 2580 2514 348 24 0 0 chr9 78801275 78801316 -39061311 + (TG)n Simple_repeat Simple_repeat 1 41 0 2787 236 93 38 chr9 78801316 78801539 -39061088 - L1ME1 LINE L1 -4026 2514 2110 759 102 25 8 chr9 78801542 78801660 -39060967 + FLAM_A SINE Alu 13 132 -10 1028 285 49 5 chr9 78801710 78802079 -39060548 - L1ME1 LINE L1 -5251 1292 908 714 302 70 45 chr9 78802345 78802746 -39059881 - L1ME1 LINE L1 -6096 444 34 2412 99 0 0 chr9 78802779 78803083 -39059544 - AluSq SINE Alu -9 304 1 194 310 0 42 chr9 78803088 78803159 -39059468 + L2 LINE L2 3234 3301 -12 429 289 130 0 chr9 78803235 78803408 -39059219 + MIR SINE MIR 37 238 -24 1305 167 0 0 chr9 78804095 78804293 -39058334 + AluJb SINE Alu 85 282 -30 180 0 0 0 chr9 78804295 78804315 -39058312 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 21 36 0 0 chr9 78804873 78804901 -39057726 + AT_rich Low_complexity Low_complexity 1 28 0 227 264 173 45 chr9 78805098 78805208 -39057419 + L3 LINE CR1 832 955 -622 189 271 71 14 chr9 78805528 78805598 -39057029 + L3 LINE CR1 1012 1085 -492 668 305 32 0 chr9 78805713 78805962 -39056665 + L1MEd LINE L1 568 824 -5295 1272 207 121 0 chr9 78806001 78806257 -39056370 + AluJo SINE Alu 2 288 -14 30 0 0 0 chr9 78806257 78806287 -39056340 + AT_rich Low_complexity Low_complexity 1 30 0 1618 164 39 4 chr9 78806297 78806421 -39056206 + AluJb SINE Alu 1 119 -193 186 43 0 0 chr9 78806421 78806444 -39056183 + (CA)n Simple_repeat Simple_repeat 2 24 0 1618 164 39 4 chr9 78806444 78806600 -39056027 + AluJb SINE Alu 119 291 -21 22 0 0 0 chr9 78806609 78806631 -39055996 + AT_rich Low_complexity Low_complexity 1 22 0 456 337 64 41 chr9 78806710 78807146 -39055481 + L1ME LINE L1 43 488 -5582 234 250 144 10 chr9 78807170 78807274 -39055353 - L1 LINE L1 -1115 5031 4914 185 250 0 0 chr9 78807565 78807601 -39055026 - L2 LINE L2 -5 3308 3273 331 272 126 0 chr9 78807842 78807945 -39054682 - L2 LINE L2 -1 3312 3197 205 297 133 16 chr9 78809194 78809322 -39053305 + L2 LINE L2 3167 3309 -4 348 64 0 0 chr9 78809324 78809371 -39053256 + (TGAA)n Simple_repeat Simple_repeat 4 50 0 291 231 143 11 chr9 78809535 78809626 -39053001 + MIR SINE MIR 109 211 -51 252 244 64 13 chr9 78809721 78809799 -39052828 - MIR3 SINE MIR -6 202 121 2311 105 0 0 chr9 78809920 78810226 -39052401 + AluSx SINE Alu 1 306 -6 225 0 0 0 chr9 78810436 78810461 -39052166 + (TG)n Simple_repeat Simple_repeat 2 26 0 983 269 59 30 chr9 78810606 78810862 -39051765 + L1ME3 LINE L1 5345 5617 -545 420 20 0 0 chr9 78810862 78810911 -39051716 + (CA)n Simple_repeat Simple_repeat 2 50 0 983 269 59 30 chr9 78810911 78811025 -39051602 + L1ME3 LINE L1 5617 5726 -436 5300 116 2 6 chr9 78811048 78811842 -39050785 - L1PB1 LINE L1 -8 6143 5353 1212 247 125 12 chr9 78811853 78812254 -39050373 + L1ME3 LINE L1 5711 6156 -6 925 183 44 0 chr9 78812435 78812615 -39050012 - MER5A DNA MER1_type 0 189 2 226 329 224 14 chr9 78812748 78813110 -39049517 - L2 LINE L2 -907 2407 1970 202 329 90 32 chr9 78813172 78813327 -39049300 - L2 LINE L2 -1354 1960 1797 22 0 0 0 chr9 78813384 78813406 -39049221 + AT_rich Low_complexity Low_complexity 1 22 0 749 194 89 32 chr9 78813488 78813736 -39048891 - L1MC5 LINE L1 -204 7757 7496 2109 128 0 0 chr9 78813857 78814146 -39048481 + AluSx SINE Alu 3 291 -21 239 222 206 0 chr9 78814244 78814307 -39048320 - MIR3 SINE MIR -9 199 124 369 255 82 92 chr9 78814570 78814754 -39047873 + MIR SINE MIR 3 184 -78 2269 110 0 0 chr9 78815221 78815513 -39047114 + AluSq SINE Alu 1 292 -21 2306 110 3 0 chr9 78815793 78816103 -39046524 - AluSx SINE Alu -1 311 1 381 325 182 10 chr9 78816288 78816673 -39045954 + L2 LINE L2 1932 2382 -932 1133 156 42 97 chr9 78816709 78816758 -39045869 - L1MB5 LINE L1 -8 6166 6116 1909 150 4 4 chr9 78816758 78817038 -39045589 - AluJb SINE Alu -30 282 3 1133 156 42 97 chr9 78817038 78817276 -39045351 - L1MB5 LINE L1 -58 6116 5895 2748 78 100 5 chr9 78817279 78817688 -39044939 - LTR7 LTR ERV1 -2 448 1 2229 108 47 13 chr9 78817688 78818068 -39044559 - HERVH LTR ERV1 0 7713 7321 1322 130 19 0 chr9 78818065 78818281 -39044346 - HERVH LTR ERV1 -1894 5819 5600 * 7519 119 12 2 chr9 78818279 78819973 -39042654 - HERVH LTR ERV1 -2566 5147 3505 849 140 7 0 chr9 78819977 78820127 -39042500 - HERVH LTR ERV1 -4423 3290 3140 * 15596 106 19 14 chr9 78820106 78823211 -39039416 - HERVH LTR ERV1 -4718 2995 1 2650 81 106 5 chr9 78823213 78823620 -39039007 - LTR7 LTR ERV1 -2 448 1 616 134 0 9 chr9 78823621 78823733 -39038894 - L1MB5 LINE L1 -278 5896 5786 27 0 0 0 chr9 78823744 78823771 -39038856 + AT_rich Low_complexity Low_complexity 1 27 0 485 191 135 14 chr9 78823891 78824032 -39038595 - L1MB5 LINE L1 -370 5810 5653 219 286 16 0 chr9 78824076 78824139 -39038488 + L2 LINE L2 3246 3309 -4 188 234 85 0 chr9 78824218 78824265 -39038362 + MIR SINE MIR 54 104 -104 1319 233 169 4 chr9 78824457 78824925 -39037702 + L1MC4a LINE L1 5334 5878 -1930 1611 179 60 27 chr9 78824999 78825300 -39037327 + AluJo SINE Alu 1 311 -1 888 247 34 115 chr9 78828089 78828307 -39034320 - L2 LINE L2 -228 3085 2905 1843 153 0 11 chr9 78828307 78828582 -39034045 + AluJo SINE Alu 17 288 -24 888 247 34 115 chr9 78828582 78828787 -39033840 - L2 LINE L2 -408 2905 2685 514 295 220 20 chr9 78828800 78829146 -39033481 - L3 LINE CR1 -356 1221 807 240 362 11 0 chr9 78829376 78829470 -39033157 - L3 LINE CR1 -784 793 699 216 97 0 0 chr9 78829693 78829724 -39032903 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 243 0 0 0 chr9 78830103 78830130 -39032497 + (TG)n Simple_repeat Simple_repeat 2 28 0 904 252 112 68 chr9 78830378 78830703 -39031924 + L1MC5 LINE L1 5213 5522 -624 1603 196 87 16 chr9 78830703 78831070 -39031557 - MSTD LTR MaLR -3 393 1 904 252 112 68 chr9 78831070 78831257 -39031370 + L1MC5 LINE L1 5522 5699 -447 1606 177 9 48 chr9 78831257 78831573 -39031054 - AluJb SINE Alu -8 304 1 904 252 112 68 chr9 78831573 78832030 -39030597 + L1MC5 LINE L1 5699 6134 -12 2262 91 17 10 chr9 78832030 78832327 -39030300 + AluSx SINE Alu 3 301 -11 904 252 112 68 chr9 78832327 78832426 -39030201 + L1MC5 LINE L1 6134 4819 -1327 2201 123 0 3 chr9 78832426 78832735 -39029892 - AluSx SINE Alu -4 308 1 904 252 112 68 chr9 78832735 78833347 -39029280 + L1MC5 LINE L1 4818 5401 -745 1708 164 0 7 chr9 78833355 78833630 -39028997 - AluSx SINE Alu -9 303 31 237 65 0 0 chr9 78834011 78834042 -39028585 + (TA)n Simple_repeat Simple_repeat 2 32 0 446 204 160 39 chr9 78834053 78834259 -39028368 + L1MC4a LINE L1 5679 5909 -1899 29 0 0 0 chr9 78834267 78834296 -39028331 + AT_rich Low_complexity Low_complexity 1 29 0 2565 48 3 7 chr9 78834352 78834662 -39027965 - AluY SINE Alu -2 309 1 568 303 60 48 chr9 78835475 78835726 -39026901 + MIR SINE MIR 8 261 -1 2161 161 61 5 chr9 78835818 78836023 -39026604 + MSTB1 LTR MaLR 1 193 -239 186 43 0 0 chr9 78836023 78836046 -39026581 + (TC)n Simple_repeat Simple_repeat 2 24 0 2161 161 61 5 chr9 78836046 78836249 -39026378 + MSTB1 LTR MaLR 193 432 0 222 327 73 9 chr9 78837236 78837346 -39025281 - L2 LINE L2 -6 3266 3150 1380 91 0 0 chr9 78837899 78838074 -39024553 + AluSg/x SINE Alu 130 304 -8 1857 113 60 21 chr9 78838208 78838490 -39024137 + AluSx SINE Alu 18 310 -2 354 45 0 0 chr9 78838711 78838755 -39023872 + (TGGA)n Simple_repeat Simple_repeat 3 46 0 674 274 60 51 chr9 78839375 78839689 -39022938 - MLT1L LTR MaLR -46 569 253 1176 82 0 0 chr9 78839790 78839937 -39022690 + AluSg/x SINE Alu 146 292 -17 306 248 13 94 chr9 78839938 78840087 -39022540 - MLT1L LTR MaLR -478 137 1 22 0 0 0 chr9 78840282 78840304 -39022323 + AT_rich Low_complexity Low_complexity 1 22 0 1260 257 117 40 chr9 78840499 78841186 -39021441 - L2 LINE L2 0 3313 2552 930 114 41 77 chr9 78841210 78841456 -39021171 - L1MA8 LINE L1 -2 6289 6053 979 211 65 117 chr9 78841543 78842193 -39020434 - L1MC5 LINE L1 -47 7914 7299 843 123 7 0 chr9 78842204 78842342 -39020285 - L1MA3 LINE L1 0 6305 6167 1320 184 7 14 chr9 78842427 78842710 -39019917 - L1MC5 LINE L1 -721 7240 6960 1007 218 25 68 chr9 78842755 78843081 -39019546 - L1MC5 LINE L1 -1017 6944 6633 319 267 171 29 chr9 78843216 78843321 -39019306 - MIR SINE MIR -120 142 23 1325 194 0 51 chr9 78843360 78843633 -39018994 + AluJb SINE Alu 37 295 -17 1493 257 32 62 chr9 78843766 78844055 -39018572 + L2 LINE L2 2499 2795 -518 1780 160 50 0 chr9 78844055 78844336 -39018291 + AluSx SINE Alu 1 295 -17 1493 257 32 62 chr9 78844336 78844889 -39017738 + L2 LINE L2 2795 3313 0 1736 180 6 31 chr9 78847372 78847689 -39014938 + AluJb SINE Alu 1 309 -3 320 265 144 128 chr9 78847863 78848169 -39014458 - L2 LINE L2 -2 3270 2960 1781 159 16 66 chr9 78848225 78848590 -39014037 + MER7A DNA MER2_type 1 345 -1 339 289 91 58 chr9 78848920 78849128 -39013499 + MIR SINE MIR 3 217 -45 225 382 132 0 chr9 78849327 78849463 -39013164 + L2 LINE L2 3118 3271 -1 2515 235 63 47 chr9 78850231 78850543 -39012084 + L1ME LINE L1 145 451 -5945 2292 115 0 3 chr9 78850543 78850848 -39011779 + AluSx SINE Alu 1 304 -8 2515 235 63 47 chr9 78850848 78851729 -39010898 + L1ME LINE L1 451 1399 -4997 2185 112 7 0 chr9 78851729 78852023 -39010604 + AluSx SINE Alu 1 296 -16 2515 235 63 47 chr9 78852023 78852095 -39010532 + L1ME LINE L1 1399 1468 -4928 2057 135 3 3 chr9 78853568 78853872 -39008755 - AluSg SINE Alu -6 304 1 29463 99 10 28 chr9 78854134 78860383 -39002244 + L1PA7 LINE L1 215 6469 0 462 276 79 3 chr9 78860374 78860604 -39002023 + L1M1 LINE L1 2738 3059 -4582 * 436 301 40 25 chr9 78860596 78860607 -39002020 + L1ME LINE L1 1770 1779 -4617 * 2165 121 10 3 chr9 78860607 78860913 -39001714 + AluSx SINE Alu 1 308 -4 436 301 40 25 chr9 78860913 78861226 -39001401 + L1ME LINE L1 1779 2099 -4297 470 261 37 52 chr9 78861255 78861389 -39001238 - MER5B DNA MER1_type -40 138 7 26943 107 9 13 chr9 78861776 78867890 -38994737 - L1P3 LINE L1 -354 6133 9 2117 148 0 0 chr9 78867947 78868258 -38994369 - AluSx SINE Alu -1 311 1 796 297 46 19 chr9 78868313 78868878 -38993749 - L1MEd LINE L1 -909 1581 895 702 280 56 39 chr9 78868952 78869363 -38993264 + L1ME LINE L1 5372 5789 -373 27 29 0 0 chr9 78869640 78869674 -38992953 + AT_rich Low_complexity Low_complexity 1 34 0 1189 166 6 0 chr9 78869770 78869945 -38992682 + AluJo SINE Alu 1 176 -136 664 275 30 4 chr9 78870292 78870528 -38992099 - L1ME2 LINE L1 -9 6155 5914 387 73 0 0 chr9 78870566 78870621 -38992006 + (TA)n Simple_repeat Simple_repeat 1 55 0 11616 192 39 38 chr9 78870623 78871216 -38991411 - L1PB3 LINE L1 -7 6863 6273 2069 116 0 27 chr9 78871216 78871517 -38991110 - AluSg1 SINE Alu -16 293 1 11616 192 39 38 chr9 78871517 78872584 -38990043 - L1PB3 LINE L1 -597 6273 5209 2259 111 24 0 chr9 78872584 78872882 -38989745 - AluSx SINE Alu -7 305 1 11616 192 39 38 chr9 78872882 78874820 -38987807 - L1PB3 LINE L1 -1661 5209 3276 787 160 0 8 chr9 78874820 78874951 -38987676 - FLAM_C SINE Alu -2 131 2 11616 192 39 38 chr9 78874951 78875915 -38986712 - L1PB3 LINE L1 -3594 3276 2295 1986 161 10 0 chr9 78875915 78876220 -38986407 - AluJo SINE Alu -4 308 1 11616 192 39 38 chr9 78876220 78877106 -38985521 - L1PB3 LINE L1 -4575 2295 1412 645 262 5 0 chr9 78877108 78877299 -38985328 - L1PB3 LINE L1 -6669 194 3 324 0 0 0 chr9 78877311 78877347 -38985280 + (TG)n Simple_repeat Simple_repeat 2 37 0 1995 207 43 40 chr9 78877347 78877951 -38984676 - L1ME2 LINE L1 -242 5922 5317 1761 189 3 7 chr9 78878041 78878342 -38984285 - AluJo SINE Alu -12 300 1 667 118 0 0 chr9 78878405 78878507 -38984120 - L1MB4 LINE L1 -14 6166 6065 834 209 11 70 chr9 78878593 78878880 -38983747 - L1ME1 LINE L1 -118 6546 6277 497 179 0 0 chr9 78878883 78878961 -38983666 - AluJ/FLAM SINE Alu -220 92 15 1558 199 53 51 chr9 78879008 78879440 -38983187 - L1ME1 LINE L1 -380 6284 5852 763 233 29 92 chr9 78879439 78879786 -38982841 - L1ME1 LINE L1 -1822 4822 4498 * 310 236 14 0 chr9 78879789 78879861 -38982766 - LTR41 LTR ERVL -114 659 587 232 194 16 16 chr9 78880188 78880250 -38982377 - LTR41 LTR ERVL -711 62 1 433 217 8 8 chr9 78880254 78880374 -38982253 - L1ME1 LINE L1 -2154 4490 4371 706 158 0 18 chr9 78880411 78880525 -38982102 - FLAM_A SINE Alu -25 117 6 2147 126 0 3 chr9 78880541 78880835 -38981792 - AluSx SINE Alu -19 293 1 922 223 66 77 chr9 78880835 78881288 -38981339 - L1ME1 LINE L1 -2292 4352 3905 1794 155 51 32 chr9 78881288 78881663 -38980964 - LTR39 LTR ERV1 -401 382 1 62 26 0 0 chr9 78881703 78881779 -38980848 + AT_rich Low_complexity Low_complexity 1 76 0 335 177 25 13 chr9 78881809 78881888 -38980739 - L1ME1 LINE L1 -3120 3524 3445 1819 206 57 12 chr9 78881937 78882339 -38980288 - MER21B LTR ERV1 -21 842 423 770 182 0 14 chr9 78882340 78882483 -38980144 + FLAM_C SINE Alu 3 143 0 1388 166 75 63 chr9 78882493 78882952 -38979675 - MER39 LTR ERV1 -203 504 111 756 115 27 104 chr9 78882932 78883115 -38979512 - MER21A LTR ERV1 -758 173 5 * 918 236 153 73 chr9 78883117 78883334 -38979293 - L1MC4 LINE L1 -259 7783 7585 2134 90 29 29 chr9 78883334 78883646 -38978981 - AluSp SINE Alu 0 313 2 2266 107 0 0 chr9 78883647 78883938 -38978689 - AluSc SINE Alu -18 291 1 918 236 153 73 chr9 78883938 78884209 -38978418 - L1MC4 LINE L1 -456 7586 7254 819 199 40 34 chr9 78884209 78884473 -38978154 - L1ME1 LINE L1 -3788 2856 2593 1167 272 50 14 chr9 78884606 78885348 -38977279 - L1ME1 LINE L1 -4832 1710 1014 326 241 25 111 chr9 78885508 78885707 -38976920 - L1ME1 LINE L1 -5539 1095 914 258 364 47 0 chr9 78885709 78885838 -38976789 + L2 LINE L2 2556 2690 -624 1205 266 9 21 chr9 78885992 78886323 -38976304 - LTR40a LTR ERVL -118 401 75 291 156 39 26 chr9 78887129 78887206 -38975421 + LTR33A LTR ERVL 446 523 0 288 371 48 12 chr9 78887206 78887373 -38975254 - L2 LINE L2 -234 3038 2866 232 250 36 0 chr9 78887434 78887490 -38975137 + CT-rich Low_complexity Low_complexity 1 58 0 2154 103 0 0 chr9 78888394 78888666 -38973961 - AluSx SINE Alu -11 301 30 448 253 75 0 chr9 78888731 78888877 -38973750 - MER103 DNA DNA -1 165 9 286 178 0 0 chr9 78888975 78889020 -38973607 - MIR SINE MIR -57 151 107 204 231 0 19 chr9 78889041 78889093 -38973534 + L2 LINE L2 3220 3270 -2 * 213 286 111 0 chr9 78889086 78889149 -38973478 - MIR SINE MIR -100 108 39 329 279 88 7 chr9 78890689 78890825 -38971802 + L1ME4a LINE L1 5970 6116 -5 3082 208 42 46 chr9 78890853 78891729 -38970898 - L1MC4 LINE L1 0 8042 7170 1920 152 3 0 chr9 78891735 78892066 -38970561 - AluSx SINE Alu 0 332 1 271 266 161 40 chr9 78893431 78893555 -38969072 - MIR SINE MIR -122 140 2 369 246 55 18 chr9 78893784 78893894 -38968733 - MIR3 SINE MIR 0 208 95 2646 55 0 0 chr9 78893962 78894269 -38968358 + AluY SINE Alu 1 307 -4 257 325 44 44 chr9 78894475 78894589 -38968038 + L2 LINE L2 2968 3081 -191 211 268 14 56 chr9 78895183 78895254 -38967373 + L2 LINE L2 3246 3313 0 444 273 91 8 chr9 78895267 78895399 -38967228 - MER5B DNA MER1_type 0 178 36 825 189 86 11 chr9 78895433 78895608 -38967019 + MER5A DNA MER1_type 1 188 -1 202 313 50 0 chr9 78896881 78896961 -38965666 + L2 LINE L2 2212 2295 -1019 212 335 106 53 chr9 78897053 78897342 -38965285 + L2 LINE L2 2444 2761 -553 1952 144 21 50 chr9 78897342 78897718 -38964909 - MLT1A1 LTR MaLR 0 365 1 212 335 106 53 chr9 78897718 78897825 -38964802 + L2 LINE L2 2761 2861 -453 821 142 8 15 chr9 78897844 78897978 -38964649 - FLAM_C SINE Alu 0 133 1 1578 219 90 7 chr9 78898031 78898452 -38964175 - LTR40c LTR ERVL -9 456 1 7846 249 52 39 chr9 78898481 78900919 -38961708 - HERVL40 LTR ERVL -48 5482 3013 786 237 33 24 chr9 78901020 78901231 -38961396 - HERVL40 LTR ERVL -4377 1153 941 2294 122 0 0 chr9 78901501 78901813 -38960814 + AluSx SINE Alu 1 312 0 1471 210 54 46 chr9 78901851 78902312 -38960315 - LTR40c LTR ERVL 0 465 1 23 68 0 0 chr9 78902456 78902500 -38960127 + AT_rich Low_complexity Low_complexity 1 44 0 627 233 81 16 chr9 78903564 78903800 -38958827 + L1ME4a LINE L1 5184 5459 -703 800 141 7 22 chr9 78903800 78903935 -38958692 + FLAM_A SINE Alu 1 133 0 627 233 81 16 chr9 78903935 78904057 -38958570 + L1ME4a LINE L1 5459 5572 -590 1884 128 80 0 chr9 78905189 78905463 -38957164 + AluSx SINE Alu 1 296 -16 861 193 12 6 chr9 78905780 78905941 -38956686 - FRAM SINE Alu -14 162 1 1872 126 63 6 chr9 78906189 78906507 -38956120 + MER44D DNA MER2_type 3 608 -1 472 229 89 32 chr9 78906690 78906847 -38955780 - MIR SINE MIR 0 262 97 249 188 21 0 chr9 78906947 78906995 -38955632 + L2 LINE L2 3265 3313 0 180 0 0 0 chr9 78907553 78907573 -38955054 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1935 140 7 10 chr9 78907577 78907869 -38954758 - AluSx SINE Alu -19 293 3 688 266 120 18 chr9 78907935 78908209 -38954418 - L2 LINE L2 0 3313 3012 1452 100 26 30 chr9 78908414 78908645 -38953982 + MER30 DNA MER1_type 1 230 0 2348 84 3 0 chr9 78909089 78909388 -38953239 - AluSg SINE Alu -10 300 1 2303 68 31 0 chr9 78909529 78909822 -38952805 - AluY SINE Alu -9 302 1 260 324 14 0 chr9 78909905 78909976 -38952651 + MIR SINE MIR 73 144 -118 351 289 55 24 chr9 78910082 78910335 -38952292 + L1ME4a LINE L1 5566 5826 -295 23 0 0 0 chr9 78910466 78910489 -38952138 + AT_rich Low_complexity Low_complexity 1 23 0 537 244 145 6 chr9 78910828 78910983 -38951644 - MIR SINE MIR -50 212 29 2276 108 7 0 chr9 78910983 78911288 -38951339 + AluSx SINE Alu 1 307 -5 537 244 145 6 chr9 78911288 78911304 -38951323 - MIR SINE MIR -233 29 17 484 316 0 13 chr9 78911393 78911545 -38951082 + MIR SINE MIR 9 158 -104 2013 128 87 71 chr9 78912037 78912430 -38950197 + MER65A LTR ERV1 1 403 -42 2474 99 0 0 chr9 78912430 78912742 -38949885 - AluSx SINE Alu 0 312 1 2013 128 87 71 chr9 78912742 78912785 -38949842 + MER65A LTR ERV1 403 444 -1 25 0 0 0 chr9 78912854 78912879 -38949748 + AT_rich Low_complexity Low_complexity 1 25 0 747 294 16 20 chr9 78913109 78913291 -38949336 + MIR SINE MIR 19 201 -61 3813 204 18 8 chr9 78913291 78914017 -38948610 - MER44D DNA MER2_type 0 605 1 747 294 16 20 chr9 78914017 78914079 -38948548 + MIR SINE MIR 201 262 0 25 31 0 0 chr9 78914316 78914348 -38948279 + AT_rich Low_complexity Low_complexity 1 32 0 467 234 36 112 chr9 78914865 78914965 -38947662 - L1ME3A LINE L1 -233 5937 5831 2038 118 0 4 chr9 78914965 78915268 -38947359 - AluSc SINE Alu 0 302 1 467 234 36 112 chr9 78915268 78915444 -38947183 - L1ME3A LINE L1 -339 5831 5681 2046 42 15 4 chr9 78915811 78916070 -38946557 - L1PA7 LINE L1 -2 6152 5891 587 210 25 0 chr9 78916170 78916289 -38946338 + FRAM SINE Alu 43 164 -12 32 67 0 0 chr9 78916672 78916732 -38945895 + AT_rich Low_complexity Low_complexity 1 60 0 243 212 0 30 chr9 78917637 78917745 -38944882 + (CATTT)n Simple_repeat Simple_repeat 1 104 0 24 0 0 0 chr9 78918347 78918371 -38944256 + AT_rich Low_complexity Low_complexity 1 24 0 463 186 0 0 chr9 78919006 78919103 -38943524 - L1MD2 LINE L1 0 6359 6263 207 0 0 0 chr9 78919112 78919135 -38943492 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 516 182 99 0 chr9 78919156 78919277 -38943350 - L1MD2 LINE L1 -84 6275 6143 551 302 80 14 chr9 78919511 78919723 -38942904 + MIR SINE MIR 24 249 -13 439 134 15 0 chr9 78920030 78920097 -38942530 + AluS SINE Alu 1 68 -245 1502 155 12 4 chr9 78920197 78920470 -38942157 + AluSx SINE Alu 32 306 0 198 0 0 0 chr9 78920826 78920848 -38941779 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 23 0 0 0 chr9 78920996 78921019 -38941608 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr9 78921066 78921094 -38941533 + AT_rich Low_complexity Low_complexity 1 28 0 251 263 263 0 chr9 78921366 78921461 -38941166 + MIR3 SINE MIR 48 167 -41 2234 104 0 10 chr9 78921707 78922015 -38940612 - AluSc SINE Alu -4 305 1 2081 138 40 0 chr9 78922384 78922745 -38939882 + AluSx SINE Alu 1 373 0 2196 97 3 32 chr9 78924309 78924619 -38938008 - AluSx SINE Alu -11 301 1 338 203 108 40 chr9 78925009 78925157 -38937470 + L1MC5 LINE L1 7531 7688 -273 641 229 65 28 chr9 78925158 78925372 -38937255 + LTR50 LTR ERVL 3 224 -571 186 43 0 0 chr9 78925404 78925427 -38937200 + (TAA)n Simple_repeat Simple_repeat 2 24 0 621 101 0 34 chr9 78925427 78925516 -38937111 - FLAM_C SINE Alu -29 114 29 2148 125 0 0 chr9 78925994 78926283 -38936344 + AluSx SINE Alu 11 299 -13 556 222 32 22 chr9 78926369 78926554 -38936073 - L1MC5 LINE L1 -42 7919 7733 204 293 61 30 chr9 78926576 78926665 -38935962 - L3 LINE CR1 -295 1282 1191 258 286 48 12 chr9 78926665 78926749 -38935878 - MER5A DNA MER1_type 0 189 103 * 930 312 225 4 chr9 78926744 78927205 -38935422 + L2 LINE L2 2486 3034 -279 313 21 0 42 chr9 78927312 78927360 -38935267 + (TTTTG)n Simple_repeat Simple_repeat 3 48 0 703 206 0 0 chr9 78927721 78927852 -38934775 - FLAM_A SINE Alu -6 136 6 228 357 45 36 chr9 78928731 78928914 -38933713 + MIR SINE MIR 36 212 -50 19091 50 2 1 chr9 78929577 78932769 -38929858 - L1PA5 LINE L1 -1 6153 2960 20212 83 11 8 chr9 78932870 78935790 -38926837 - L1PA5 LINE L1 -3207 2939 11 1955 86 58 41 chr9 78935800 78936092 -38926535 - AluSq SINE Alu -16 297 1 2274 129 0 0 chr9 78936103 78936412 -38926215 - AluSg SINE Alu -1 309 1 2315 106 0 13 chr9 78936419 78936730 -38925897 - AluSg SINE Alu 0 310 4 661 241 38 6 chr9 78936815 78936973 -38925654 - MIR SINE MIR -19 243 81 239 299 38 66 chr9 78937058 78937269 -38925358 - L1ME LINE L1 -389 5732 5528 2214 107 3 10 chr9 78937508 78937807 -38924820 - AluY SINE Alu -12 299 3 1536 269 74 25 chr9 78937896 78938850 -38923777 - L1ME LINE L1 -1875 4271 3251 207 0 0 0 chr9 78938881 78938904 -38923723 + (A)n Simple_repeat Simple_repeat 1 23 0 1811 163 0 14 chr9 78938971 78939292 -38923335 - AluJb SINE Alu 0 317 1 344 197 0 0 chr9 78939362 78939451 -38923176 - L1ME LINE L1 -3219 2927 2839 2061 180 16 60 chr9 78939467 78939983 -38922644 - MLT1D LTR MaLR 0 505 13 955 262 37 37 chr9 78939994 78940368 -38922259 - L1ME LINE L1 -3404 2742 2369 915 234 30 14 chr9 78940373 78940578 -38922049 - L1MC4 LINE L1 -453 7589 7376 2393 97 0 0 chr9 78940578 78940877 -38921750 + AluSq SINE Alu 1 299 -14 915 234 30 14 chr9 78940877 78940966 -38921661 - L1MC4 LINE L1 -666 7376 7290 2035 141 0 7 chr9 78941187 78941485 -38921142 - AluSg SINE Alu -14 296 1 2205 113 0 10 chr9 78942125 78942426 -38920201 + AluSx SINE Alu 1 298 -14 3848 93 18 6 chr9 78942538 78943085 -38919542 - MER41A LTR ERV1 0 554 1 231 36 0 0 chr9 78943350 78943378 -38919249 + (A)n Simple_repeat Simple_repeat 1 28 0 391 276 76 34 chr9 78944162 78944342 -38918285 + L1MC5 LINE L1 7558 7729 -232 3437 109 41 2 chr9 78944342 78944875 -38917752 - MER41C LTR ERV1 0 554 1 391 276 76 34 chr9 78944875 78945049 -38917578 + L1MC5 LINE L1 7729 7927 -34 345 260 96 0 chr9 78945075 78945179 -38917448 - MIR3 SINE MIR -13 195 82 566 341 17 0 chr9 78945462 78945638 -38916989 + MIR3 SINE MIR 30 208 0 378 315 68 6 chr9 78946228 78946390 -38916237 - MIR SINE MIR 0 262 91 1002 167 6 19 chr9 78946659 78946793 -38915834 + AluJo SINE Alu 1 134 -178 2529 77 0 10 chr9 78946793 78947103 -38915524 + AluSq SINE Alu 1 307 -6 1002 167 6 19 chr9 78947103 78947130 -38915497 + AluJo SINE Alu 134 160 -152 1027 276 89 42 chr9 78947387 78947985 -38914642 - L1MC4a LINE L1 -1878 5930 5305 2170 118 3 0 chr9 78948035 78948331 -38914296 - AluSx SINE Alu -15 297 1 256 285 44 38 chr9 78948402 78948560 -38914067 - L1P LINE L1 -1099 5047 4889 2458 93 3 0 chr9 78949691 78950001 -38912626 - AluSx SINE Alu -1 311 1 235 317 33 58 chr9 78950043 78950163 -38912464 - L2 LINE L2 -4 3309 3193 2222 114 0 0 chr9 78950239 78950538 -38912089 + AluSx SINE Alu 1 299 -13 2072 134 7 0 chr9 78950676 78950968 -38911659 - AluSx SINE Alu -18 294 1 295 317 123 36 chr9 78952122 78952431 -38910196 + L2 LINE L2 1977 2312 -1002 2068 128 21 0 chr9 78952678 78952968 -38909659 - AluSx SINE Alu -16 296 1 353 340 203 7 chr9 78953192 78953463 -38909164 - L3 LINE CR1 -40 1537 1214 252 196 18 36 chr9 78953590 78953646 -38908981 + MIR SINE MIR 97 151 -57 323 140 0 0 chr9 78953813 78953863 -38908764 + MIR3 SINE MIR 151 200 -8 272 352 21 41 chr9 78954023 78954127 -38908500 + L3 LINE CR1 1417 1519 -58 1620 137 27 38 chr9 78954127 78954420 -38908207 + AluJo SINE Alu 19 308 -4 272 352 21 41 chr9 78954420 78954460 -38908167 + L3 LINE CR1 1519 1558 -19 * 390 350 92 37 chr9 78954449 78954775 -38907852 + L2 LINE L2 2925 3268 -4 424 290 10 0 chr9 78954795 78954895 -38907732 + MIR3 SINE MIR 89 189 -19 336 301 58 0 chr9 78955385 78955488 -38907139 - MIR SINE MIR -107 155 47 300 273 50 0 chr9 78956351 78956450 -38906177 - L3 LINE CR1 -289 1288 1185 607 147 0 20 chr9 78957046 78957288 -38905339 + AluJo SINE Alu 1 305 -7 473 293 79 0 chr9 78957425 78957589 -38905038 + MIR3 SINE MIR 32 208 0 360 242 50 10 chr9 78959097 78959196 -38903431 + MER5A DNA MER1_type 4 106 -83 1466 159 63 50 chr9 78959267 78959568 -38903059 + AluJo SINE Alu 1 305 -7 347 222 111 22 chr9 78959921 78960011 -38902616 + MIR3 SINE MIR 59 156 -52 610 191 48 21 chr9 78960614 78960802 -38901825 - L1MDa LINE L1 -3965 2575 2383 2125 184 44 21 chr9 78960882 78961405 -38901222 - L1MDa LINE L1 -4366 2174 1640 2126 212 19 19 chr9 78961433 78961909 -38900718 - MER68 LTR ERV1 -11 551 76 587 176 0 34 chr9 78961878 78961997 -38900630 - Charlie1a DNA MER1_type -1306 149 35 * 278 371 69 0 chr9 78962016 78962175 -38900452 + MIR SINE MIR 90 259 -3 1781 158 55 0 chr9 78962234 78962507 -38900120 + AluSx SINE Alu 1 288 -24 180 283 0 0 chr9 78962682 78962728 -38899899 + L2 LINE L2 2914 2959 -313 1272 151 108 15 chr9 78962928 78963187 -38899440 + MSTA LTR MaLR 146 428 0 1769 178 0 23 chr9 78963974 78964277 -38898350 - AluJb SINE Alu -16 296 1 271 313 34 42 chr9 78964414 78964676 -38897951 - MLT1F1-int LTR MaLR -832 539 280 375 232 105 30 chr9 78964773 78965096 -38897531 - MLT1F1 LTR MaLR 0 588 158 2209 83 39 3 chr9 78965102 78965439 -38897188 - L1MC/D LINE L1 -562 5771 5423 706 186 29 54 chr9 78965471 78965675 -38896952 - L1MC4a LINE L1 -1651 6157 5959 2329 97 0 7 chr9 78965791 78966091 -38896536 - AluSp SINE Alu -15 298 1 1375 179 67 28 chr9 78966154 78966439 -38896188 - AluJb SINE Alu -6 296 1 2225 91 14 0 chr9 78966511 78966798 -38895829 - AluSg SINE Alu -18 292 2 1525 274 110 40 chr9 78966899 78967625 -38895002 - L1MEd LINE L1 -5339 780 4 366 279 52 30 chr9 78968720 78968902 -38893725 + MIR SINE MIR 20 202 -60 674 156 33 0 chr9 79069309 79069431 -38793196 + L1MA9 LINE L1 6150 6275 -37 1826 153 3 17 chr9 79069536 79069824 -38792803 + AluJb SINE Alu 1 284 -28 986 153 0 0 chr9 79070476 79070626 -38792001 - Tigger5 DNA MER2_type 0 2323 2174 264 86 0 0 chr9 79070619 79070654 -38791973 + Tigger5 DNA MER2_type 2078 2112 -211 * 1485 152 41 0 chr9 79070654 79070923 -38791704 - MER65C LTR ERV1 0 461 182 334 326 106 47 chr9 79071379 79071701 -38790926 - L2 LINE L2 -1132 2182 1842 2194 112 7 3 chr9 79071841 79072135 -38790492 - AluSx SINE Alu -17 295 1 1003 239 72 91 chr9 79072242 79072661 -38789966 - MLT1J2 LTR MaLR -37 413 3 281 289 134 31 chr9 79072768 79072865 -38789762 - L2 LINE L2 -11 3261 3155 245 352 11 0 chr9 79072869 79072957 -38789670 + L2 LINE L2 2442 2530 -784 2130 118 7 0 chr9 79072974 79073270 -38789357 + AluSx SINE Alu 1 298 -14 601 165 0 0 chr9 79073814 79073917 -38788710 - MLT1D LTR MaLR 0 505 403 435 248 85 44 chr9 79074032 79074237 -38788390 + MIR SINE MIR 32 248 -14 2311 97 0 3 chr9 79074271 79074571 -38788056 + AluSx SINE Alu 1 299 -13 1761 208 32 41 chr9 79074571 79075038 -38787589 - L1ME2 LINE L1 -213 5951 5489 483 338 6 6 chr9 79075087 79075247 -38787380 - MIR SINE MIR -70 192 33 2015 97 7 0 chr9 79075256 79075535 -38787092 - MER41A LTR ERV1 0 554 274 1337 252 197 6 chr9 79075641 79076180 -38786447 - LTR41 LTR ERVL -129 644 3 296 298 200 44 chr9 79078876 79079672 -38782955 + L2 LINE L2 1570 2489 -825 943 293 63 13 chr9 79079673 79080052 -38782575 - LTR16A LTR ERVL -1 449 52 436 305 92 54 chr9 79080180 79080674 -38781953 - L2 LINE L2 -35 3237 2734 384 213 238 6 chr9 79080888 79081048 -38781579 - MIR SINE MIR 0 262 66 359 290 76 7 chr9 79081764 79081909 -38780718 + L2 LINE L2 2707 2861 -453 569 221 170 43 chr9 79081972 79082225 -38780402 + L2 LINE L2 3027 3311 -2 1835 146 6 50 chr9 79082414 79082737 -38779890 + AluJo SINE Alu 1 309 -3 2341 62 0 0 chr9 79082737 79083011 -38779616 + AluY SINE Alu 1 275 -36 236 30 30 0 chr9 79083017 79083050 -38779577 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 226 291 17 103 chr9 79083231 79083348 -38779279 - L3b LINE CR1 -201 1382 1276 727 145 264 42 chr9 79084751 79084944 -38777683 - MER46A DNA MER2_type 0 236 1 190 370 151 46 chr9 79086396 79086615 -38776012 + L2 LINE L2 3005 3246 -26 * 247 297 81 9 chr9 79086592 79086703 -38775924 - L2 LINE L2 -29 3284 3166 202 239 22 0 chr9 79086915 79086961 -38775666 + (TATATG)n Simple_repeat Simple_repeat 1 47 0 348 24 0 0 chr9 79087779 79087820 -38774807 + (CA)n Simple_repeat Simple_repeat 1 41 0 2135 109 28 0 chr9 79087851 79088136 -38774491 - AluSx SINE Alu -19 293 1 2134 123 10 3 chr9 79089480 79089790 -38772837 - AluSx SINE Alu 0 312 1 221 211 164 77 chr9 79090361 79090465 -38772162 - MIR SINE MIR -62 200 88 504 351 86 37 chr9 79091596 79092319 -38770308 + L2 LINE L2 2048 2805 -509 760 227 0 0 chr9 79092441 79092569 -38770058 - FLAM_A SINE Alu -4 129 2 399 269 29 19 chr9 79092778 79092882 -38769745 + L2 LINE L2 3163 3267 -5 1739 269 93 30 chr9 79092987 79093360 -38769267 - L2 LINE L2 -108 3205 2857 2149 105 7 0 chr9 79093360 79093645 -38768982 + AluSx SINE Alu 1 287 -25 411 21 0 0 chr9 79093645 79093693 -38768934 + (TGAA)n Simple_repeat Simple_repeat 3 50 0 1739 269 93 30 chr9 79093693 79094223 -38768404 - L2 LINE L2 -455 2858 2168 759 190 176 23 chr9 79094246 79094462 -38768165 - MER46C DNA MER2_type -18 320 72 21 36 0 0 chr9 79094485 79094513 -38768114 + AT_rich Low_complexity Low_complexity 1 28 0 262 242 123 73 chr9 79094542 79094672 -38767955 - L2 LINE L2 -1204 2110 1988 1385 197 48 0 chr9 79094672 79094941 -38767686 + AluJo SINE Alu 1 282 -30 213 39 0 0 chr9 79094947 79094973 -38767654 + (GA)n Simple_repeat Simple_repeat 2 27 0 262 242 123 73 chr9 79094973 79095054 -38767573 - L2 LINE L2 -1330 1984 1881 1052 102 4 186 chr9 79095925 79096161 -38766466 + 7SK RNA RNA 1 193 0 1158 164 27 27 chr9 79096982 79097202 -38765425 - AluJb SINE Alu -6 306 87 330 333 20 27 chr9 79097659 79097809 -38764818 - L1MC/D LINE L1 -2152 5656 5508 254 330 10 48 chr9 79098331 79098434 -38764193 + MIR3 SINE MIR 107 205 -3 27 49 0 0 chr9 79099706 79099747 -38762880 + AT_rich Low_complexity Low_complexity 1 41 0 203 223 39 61 chr9 79101525 79101625 -38761002 + MIR3 SINE MIR 55 182 -26 240 267 48 38 chr9 79101743 79101848 -38760779 - MIR SINE MIR -58 204 99 371 300 46 15 chr9 79101857 79101987 -38760640 + MIR3 SINE MIR 68 201 -7 348 233 67 33 chr9 79102503 79102623 -38760004 + MIR3 SINE MIR 78 201 -7 1599 133 51 20 chr9 79102652 79102907 -38759720 + AluJb SINE Alu 27 289 -23 280 298 58 0 chr9 79103225 79103317 -38759310 + MIR SINE MIR 23 121 -87 851 147 100 13 chr9 79104170 79104320 -38758307 + FRAM SINE Alu 1 162 -14 456 165 10 29 chr9 79105032 79105135 -38757492 - L1M4 LINE L1 -1009 5137 5037 1039 90 27 58 chr9 79105150 79105188 -38757439 - L1MA8 LINE L1 -10 6281 6243 3891 117 2 24 chr9 79105188 79105727 -38756900 + MER1A DNA MER1_type 1 527 0 1039 90 27 58 chr9 79105727 79105876 -38756751 - L1MA8 LINE L1 -48 6243 6100 327 346 25 17 chr9 79105895 79106135 -38756492 - L1ME LINE L1 -316 5805 5564 1385 196 26 8 chr9 79106659 79106925 -38755702 + L1MB8 LINE L1 4785 5055 -1091 1587 122 4 0 chr9 79106925 79107162 -38755465 + L1MA8 LINE L1 5558 5795 -505 1038 130 104 0 chr9 79107269 79107461 -38755166 + L1MA8 LINE L1 6070 6281 -10 4037 160 56 22 chr9 79107474 79108526 -38754101 + L1MB8 LINE L1 5033 6113 -65 362 73 0 18 chr9 79108526 79108581 -38754046 + (GGAA)n Simple_repeat Simple_repeat 2 55 0 2453 118 16 22 chr9 79109013 79109379 -38753248 + THE1B LTR MaLR 1 364 0 2544 229 143 97 chr9 79109545 79110132 -38752495 - L2 LINE L2 -3 3310 2752 570 140 43 0 chr9 79110132 79110225 -38752402 + AluSq/x SINE Alu 34 130 -182 1622 135 0 0 chr9 79110225 79110455 -38752172 + AluSg/x SINE Alu 82 311 -1 2544 229 143 97 chr9 79110455 79111421 -38751206 - L2 LINE L2 -560 2753 1599 572 208 40 0 chr9 79111424 79111549 -38751078 - L2 LINE L2 -1861 1453 1324 2438 139 45 21 chr9 79111979 79112248 -38750379 - MSTC LTR MaLR 0 428 144 4639 115 51 28 chr9 79112248 79112959 -38749668 - LTR8A LTR ERV1 0 727 1 2438 139 45 21 chr9 79112959 79113107 -38749520 - MSTC LTR MaLR -284 144 1 297 204 24 54 chr9 79113289 79113456 -38749171 + (TA)n Simple_repeat Simple_repeat 2 163 0 2216 101 3 7 chr9 79113469 79113766 -38748861 - AluSp SINE Alu -17 296 1 387 103 29 57 chr9 79113786 79113961 -38748666 + (TA)n Simple_repeat Simple_repeat 2 171 0 860 207 113 71 chr9 79114139 79114633 -38747994 + MER34B LTR ERV1 6 565 0 333 62 0 0 chr9 79114902 79114950 -38747677 - Alu SINE Alu 0 300 253 309 70 0 23 chr9 79115053 79115096 -38747531 + Alu SINE Alu 252 293 -9 2413 196 53 72 chr9 79115167 79115277 -38747350 - L1MC5 LINE L1 -42 7919 7808 1802 183 58 25 chr9 79115277 79115453 -38747174 + MLT1A2 LTR MaLR 1 170 -204 276 30 0 0 chr9 79115453 79115486 -38747141 + (TC)n Simple_repeat Simple_repeat 2 34 0 270 0 0 0 chr9 79115485 79115515 -38747112 + (TG)n Simple_repeat Simple_repeat 1 30 0 * 1802 183 58 25 chr9 79115486 79115698 -38746929 + MLT1A2 LTR MaLR 170 372 -2 2413 196 53 72 chr9 79115698 79115902 -38746725 - L1MC5 LINE L1 -153 7808 7602 1893 165 78 74 chr9 79115902 79116337 -38746290 + MER31B LTR ERV1 2 441 -25 2172 120 0 0 chr9 79116337 79116629 -38745998 + AluY SINE Alu 1 292 -19 1893 165 78 74 chr9 79116629 79116653 -38745974 + MER31B LTR ERV1 441 463 -3 2413 196 53 72 chr9 79116653 79117182 -38745445 - L1MC5 LINE L1 -359 7602 7091 703 258 60 60 chr9 79117186 79117243 -38745384 - L1ME4a LINE L1 -260 5861 5805 1661 166 14 24 chr9 79117243 79117538 -38745089 + AluJb SINE Alu 1 292 -20 703 258 60 60 chr9 79117538 79117845 -38744782 - L1ME4a LINE L1 -315 5806 5497 1951 138 75 36 chr9 79118319 79118680 -38743947 - THE1C LTR MaLR 0 375 1 2098 138 3 6 chr9 79119228 79119539 -38743088 + AluSx SINE Alu 1 310 -2 443 198 12 0 chr9 79119560 79119646 -38742981 + L1MD3 LINE L1 7787 7873 -122 295 208 0 0 chr9 79119646 79119699 -38742928 + LTR28 LTR ERV1 1 53 -967 * 2184 148 102 5 chr9 79119675 79120059 -38742568 + MER61C LTR ERV1 14 434 0 439 186 115 0 chr9 79120059 79120172 -38742455 + L1MD3 LINE L1 7870 7995 0 217 0 0 0 chr9 79120237 79120261 -38742366 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2235 109 0 0 chr9 79120261 79120546 -38742081 - AluSx SINE Alu -27 285 1 568 313 60 36 chr9 79120680 79121380 -38741247 - L1MC4a LINE L1 -1837 5971 5255 1175 195 143 41 chr9 79121624 79122037 -38740590 + LTR50 LTR ERVL 1 567 -228 1608 90 0 0 chr9 79122037 79122238 -38740389 - AluY SINE Alu -6 305 105 1175 195 143 41 chr9 79122238 79122355 -38740272 + LTR50 LTR ERVL 567 671 -124 892 282 78 10 chr9 79122499 79122808 -38739819 - L2 LINE L2 -2099 1215 886 465 299 130 48 chr9 79122811 79123394 -38739233 + L2 LINE L2 2227 2857 -457 201 121 0 0 chr9 79123577 79123610 -38739017 + (CAAT)n Simple_repeat Simple_repeat 3 35 0 2370 105 0 0 chr9 79123621 79123925 -38738702 + AluSx SINE Alu 1 304 -8 442 257 53 0 chr9 79124188 79124301 -38738326 - L2 LINE L2 -6 3266 3148 693 265 44 0 chr9 79124313 79124494 -38738133 - MIR SINE MIR -13 249 61 762 188 0 0 chr9 79124743 79124876 -38737751 + FLAM_C SINE Alu 1 133 -10 2142 104 0 7 chr9 79124880 79125209 -38737418 + AluSc SINE Alu 1 327 0 364 215 51 0 chr9 79125765 79125844 -38736783 + MIR SINE MIR 35 117 -91 22 70 0 0 chr9 79126051 79126094 -38736533 + AT_rich Low_complexity Low_complexity 1 43 0 255 241 35 35 chr9 79127001 79127117 -38735510 - HAL1b LINE L1 -11 1337 1222 205 156 0 0 chr9 79127273 79127305 -38735322 + (CA)n Simple_repeat Simple_repeat 1 32 0 235 252 107 23 chr9 79127469 79127600 -38735027 + MIR SINE MIR 63 204 -58 266 280 19 84 chr9 79128001 79128108 -38734519 + MIR SINE MIR 19 118 -90 1159 172 73 7 chr9 79128123 79128426 -38734201 - MER33 DNA MER1_type 0 324 2 314 311 100 0 chr9 79128445 79128535 -38734092 - L2 LINE L2 -18 3254 3156 180 121 61 0 chr9 79128533 79128566 -38734061 + MIR3 SINE MIR 167 201 -7 * 182 337 102 51 chr9 79128676 79128766 -38733861 + L2 LINE L2 3134 3228 -44 937 221 7 99 chr9 79128766 79129038 -38733589 + MIR SINE MIR 3 249 -13 202 156 0 0 chr9 79129060 79129092 -38733535 + L2 LINE L2 3241 3272 0 196 314 57 74 chr9 79129918 79130093 -38732534 - L2 LINE L2 0 3272 3101 834 180 14 38 chr9 79130509 79130720 -38731907 + L1MB8 LINE L1 5971 6176 -2 1049 141 6 6 chr9 79130819 79130982 -38731645 + AluSg/x SINE Alu 131 293 -17 261 231 221 48 chr9 79131106 79131210 -38731417 - L3 LINE CR1 -10 1567 1446 317 286 11 11 chr9 79131561 79131652 -38730975 - L2 LINE L2 -1 3312 3222 478 246 256 5 chr9 79131817 79132012 -38730615 + MIR SINE MIR 6 249 -13 259 173 0 19 chr9 79131979 79132031 -38730596 + L2 LINE L2 3263 3313 0 * 293 286 245 0 chr9 79132198 79132345 -38730282 - MIR SINE MIR -74 188 6 387 41 0 0 chr9 79132627 79132676 -38729951 + (TG)n Simple_repeat Simple_repeat 2 50 0 251 233 67 11 chr9 79134015 79134105 -38728522 + L1MC5 LINE L1 7797 7891 -70 203 122 61 20 chr9 79134508 79134557 -38728070 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 568 194 0 0 chr9 79134845 79134948 -38727679 + MER3 DNA MER1_type 9 111 -98 1042 206 43 0 chr9 79134953 79135162 -38727465 - AluJb SINE Alu -14 298 81 291 176 0 0 chr9 79135165 79135216 -38727411 + MER3 DNA MER1_type 153 203 -6 213 188 0 78 chr9 79135224 79135288 -38727339 + L2 LINE L2 2186 2244 -1070 330 326 91 29 chr9 79135515 79135925 -38726702 + L2 LINE L2 2627 3060 -212 529 259 8 8 chr9 79136517 79136648 -38725979 - MIR SINE MIR -1 261 131 285 306 18 45 chr9 79136886 79136997 -38725630 + MIR SINE MIR 16 123 -85 * 748 329 55 29 chr9 79136996 79137343 -38725284 - L2 LINE L2 0 3272 2917 307 187 27 0 chr9 79137395 79137470 -38725157 + L1MD2 LINE L1 6282 6358 -1 1958 154 131 13 chr9 79138379 79138762 -38723865 + MSTA LTR MaLR 1 428 0 23 92 0 0 chr9 79139763 79139828 -38722799 + AT_rich Low_complexity Low_complexity 1 65 0 292 364 67 24 chr9 79140372 79140515 -38722112 + MIR SINE MIR 2 158 -104 1919 171 0 0 chr9 79140515 79140808 -38721819 + AluJo SINE Alu 1 293 -19 292 364 67 24 chr9 79140808 79140873 -38721754 + MIR SINE MIR 158 219 -43 232 290 23 23 chr9 79141045 79141176 -38721451 + L1ME3A LINE L1 91 221 -5984 2220 113 24 46 chr9 79141307 79141679 -38720948 + THE1B LTR MaLR 1 364 0 10886 89 24 12 chr9 79141680 79143240 -38719387 + THE1B-int LTR MaLR 2 1580 0 2491 106 8 22 chr9 79143240 79143609 -38719018 + THE1B LTR MaLR 1 364 0 21 36 0 0 chr9 79143715 79143743 -38718884 + AT_rich Low_complexity Low_complexity 1 28 0 471 278 8 97 chr9 79143850 79143999 -38718628 + L1ME3A LINE L1 544 662 -5543 1145 78 208 10 chr9 79143999 79144083 -38718544 - MER30 DNA MER1_type 0 230 164 387 0 0 0 chr9 79144083 79144126 -38718501 + (TG)n Simple_repeat Simple_repeat 2 44 0 1145 78 208 10 chr9 79144126 79144233 -38718394 - MER30 DNA MER1_type -66 164 1 471 278 8 97 chr9 79144233 79144342 -38718285 + L1ME3A LINE L1 662 779 -5426 580 301 45 20 chr9 79144414 79144603 -38718024 + L1ME3A LINE L1 979 1162 -1414 2290 99 7 0 chr9 79144603 79144906 -38717721 + AluSp SINE Alu 1 305 -8 580 301 45 20 chr9 79144906 79145233 -38717394 + L1ME3A LINE L1 1162 1600 -976 497 283 98 20 chr9 79145707 79146153 -38716474 + L1ME3A LINE L1 2148 2594 -3621 2022 144 3 16 chr9 79146154 79146466 -38716161 + AluSg SINE Alu 1 308 -2 558 225 45 21 chr9 79146876 79147148 -38715479 + L1ME3A LINE L1 5326 5613 -620 727 187 45 56 chr9 79147148 79147346 -38715281 + pTR5 LTR ERV1 743 938 -1500 3153 126 180 141 chr9 79147456 79148503 -38714124 + pTR5 LTR ERV1 1352 2438 0 2012 142 3 7 chr9 79148624 79148920 -38713707 + AluSx SINE Alu 1 295 -17 640 261 48 11 chr9 79148933 79149201 -38713426 + L1ME3A LINE L1 5739 6016 -223 345 240 0 21 chr9 79149357 79149453 -38713174 - MER8 DNA MER2_type -145 94 1 2153 92 10 17 chr9 79149474 79149767 -38712860 + AluSc SINE Alu 1 291 -18 26 0 0 0 chr9 79149862 79149888 -38712739 + AT_rich Low_complexity Low_complexity 1 26 0 1309 304 226 21 chr9 79150153 79151174 -38711453 - L3 LINE CR1 -11 1566 337 2012 141 24 0 chr9 79152050 79152341 -38710286 - AluSx SINE Alu -14 298 1 22 0 0 0 chr9 79152678 79152700 -38709927 + AT_rich Low_complexity Low_complexity 1 22 0 323 230 27 0 chr9 79152743 79152817 -38709810 + MER58 DNA MER1_type 24 99 -2321 420 143 0 0 chr9 79152828 79152898 -38709729 + MER58 DNA MER1_type 2348 2417 -3 268 246 148 21 chr9 79153659 79153801 -38708826 + L2 LINE L2 2866 3025 -288 2333 105 0 0 chr9 79153813 79154117 -38708510 + AluSc SINE Alu 1 304 -5 253 253 79 69 chr9 79154155 79154559 -38708068 + L1MEd LINE L1 3175 3582 -2633 40826 33 24 2 chr9 79154578 79160598 -38702029 - L1PA2 LINE L1 0 6155 2 1346 163 40 104 chr9 79160667 79160993 -38701634 - AluYb8 SINE Alu -13 305 1 301 237 123 35 chr9 79160994 79161108 -38701519 + L1MEd LINE L1 3631 3754 -2461 1346 237 163 26 chr9 79161239 79161940 -38700687 + HAL1 LINE L1 1014 1810 -697 1689 219 136 65 chr9 79161954 79162677 -38699950 + MER21B LTR ERV1 14 787 -76 288 269 0 0 chr9 79162677 79162744 -38699883 + HAL1 LINE L1 1813 1879 -628 1398 50 22 0 chr9 79162901 79163081 -38699546 + L1PA6 LINE L1 5970 6153 -1 21 36 0 0 chr9 79163663 79163691 -38698936 + AT_rich Low_complexity Low_complexity 1 28 0 309 247 119 112 chr9 79164404 79164655 -38697972 - L2 LINE L2 -86 3186 2934 2208 93 0 14 chr9 79164788 79165078 -38697549 + AluY SINE Alu 1 286 -25 2437 88 0 0 chr9 79165091 79165398 -38697229 + AluSg1 SINE Alu 1 307 -2 22 0 0 0 chr9 79166580 79166602 -38696025 + AT_rich Low_complexity Low_complexity 1 22 0 898 178 13 19 chr9 79167504 79167661 -38694966 - AluJb SINE Alu -20 292 137 705 207 70 70 chr9 79167738 79167994 -38694633 - MER112 DNA MER1_type 0 256 1 261 0 0 0 chr9 79168149 79168178 -38694449 + (A)n Simple_repeat Simple_repeat 1 29 0 189 327 0 0 chr9 79168327 79168379 -38694248 + MIR3 SINE MIR 112 163 -45 2001 103 35 31 chr9 79168382 79168694 -38693933 - AluSc SINE Alu 0 309 1 458 200 0 0 chr9 79169556 79169641 -38692986 - AluJ/FLAM SINE Alu -227 85 1 1950 104 38 76 chr9 79172003 79172319 -38690308 - AluSg SINE Alu -6 304 1 21 0 0 0 chr9 79172608 79172629 -38689998 + AT_rich Low_complexity Low_complexity 1 21 0 1541 139 111 32 chr9 79172664 79172799 -38689828 - AluJb SINE Alu -10 302 179 2528 70 0 10 chr9 79172799 79173112 -38689515 - AluSx SINE Alu -2 310 1 1541 139 111 32 chr9 79173112 79173256 -38689371 - AluJb SINE Alu -133 179 1 225 176 27 95 chr9 79173326 79173400 -38689227 + MIR3 SINE MIR 122 190 -18 275 204 0 0 chr9 79173560 79173609 -38689018 + L3 LINE CR1 1528 1576 -1 743 175 26 129 chr9 79174142 79174457 -38688170 + L1MB8 LINE L1 5915 6215 0 24 0 0 0 chr9 79174807 79174831 -38687796 + AT_rich Low_complexity Low_complexity 1 24 0 285 329 0 0 chr9 79175714 79175793 -38686834 - L2 LINE L2 -8 3264 3186 478 296 85 34 chr9 79176339 79176515 -38686112 - MIR SINE MIR -70 192 8 910 249 102 51 chr9 79177014 79177054 -38685573 + MER77 LTR ERV1 278 315 -290 1789 173 0 17 chr9 79177054 79177349 -38685278 + AluJb SINE Alu 5 294 -18 910 249 102 51 chr9 79177349 79177653 -38684974 + MER77 LTR ERV1 315 598 -7 2533 63 0 3 chr9 79178033 79178333 -38684294 - AluY SINE Alu -12 299 1 267 295 32 11 chr9 79179405 79179500 -38683127 - L2 LINE L2 -219 3053 2957 240 250 96 77 chr9 79179655 79179811 -38682816 + L1MC/D LINE L1 5317 5475 -2333 5455 105 64 0 chr9 79180094 79180923 -38681704 + L1PA16 LINE L1 5275 6156 -10 2548 56 0 7 chr9 79181036 79181341 -38681286 - AluY SINE Alu -8 303 1 27 29 0 0 chr9 79181397 79181431 -38681196 + AT_rich Low_complexity Low_complexity 1 34 0 22 0 0 0 chr9 79181773 79181795 -38680832 + AT_rich Low_complexity Low_complexity 1 22 0 658 279 73 10 chr9 79182039 79182243 -38680384 + MER20B DNA MER1_type 6 222 -561 2475 81 3 0 chr9 79182384 79182693 -38679934 - AluSg SINE Alu 0 310 1 913 201 105 0 chr9 79182731 79182970 -38679657 + MER20B DNA MER1_type 516 779 -4 472 304 132 9 chr9 79183055 79183275 -38679352 + MIR SINE MIR 13 259 -3 263 198 161 25 chr9 79183789 79183870 -38678757 - L2 LINE L2 -3 3310 3219 1287 226 274 5 chr9 79183870 79184247 -38678380 + MLT2B1 LTR ERVL 1 497 -23 378 0 0 0 chr9 79184247 79184289 -38678338 + (TG)n Simple_repeat Simple_repeat 2 43 0 1287 226 274 5 chr9 79184289 79184319 -38678308 + MLT2B1 LTR ERVL 497 518 -2 21 57 0 0 chr9 79184564 79184599 -38678028 + AT_rich Low_complexity Low_complexity 1 35 0 219 361 52 10 chr9 79184882 79184979 -38677648 + L2 LINE L2 3161 3261 -11 1660 179 17 24 chr9 79185163 79185460 -38677167 + AluJo SINE Alu 1 295 -17 2298 84 0 0 chr9 79185882 79186167 -38676460 + AluSc SINE Alu 1 285 -24 206 0 69 0 chr9 79186171 79186200 -38676427 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 254 257 235 21 chr9 79186361 79186632 -38675995 + L1ME4a LINE L1 5318 5661 -460 2275 239 147 22 chr9 79186673 79187694 -38674933 + L1ME LINE L1 239 1347 -4733 381 289 102 0 chr9 79187695 79187823 -38674804 + MLT1F1 LTR MaLR 206 346 -221 219 114 0 0 chr9 79189108 79189143 -38673484 + (TG)n Simple_repeat Simple_repeat 1 35 0 216 0 0 0 chr9 79190480 79190504 -38672123 + (A)n Simple_repeat Simple_repeat 1 24 0 2147 124 7 0 chr9 79191285 79191576 -38671051 + AluSx SINE Alu 1 293 -19 304 226 73 48 chr9 79193037 79193161 -38669466 + MLT1J LTR MaLR 1 127 -384 26 0 0 0 chr9 79193469 79193495 -38669132 + AT_rich Low_complexity Low_complexity 1 26 0 1240 128 4 103 chr9 79193898 79194140 -38668487 - AluJb SINE Alu -94 218 1 1041 171 35 83 chr9 79194771 79194999 -38667628 - MER20 DNA MER1_type 0 219 3 2359 81 3 19 chr9 79195857 79196167 -38666460 + AluSg SINE Alu 1 305 -5 252 203 181 71 chr9 79196842 79197024 -38665603 + L1ME4a LINE L1 5718 5919 -202 529 212 101 0 chr9 79197036 79197135 -38665492 + FLAM_A SINE Alu 1 109 -33 495 48 0 0 chr9 79197142 79197204 -38665423 + (CA)n Simple_repeat Simple_repeat 2 63 0 330 213 154 37 chr9 79198371 79198507 -38664120 + L1ME4a LINE L1 5968 6119 -2 * 1328 210 39 42 chr9 79198492 79198549 -38664078 + L1MB7 LINE L1 5813 5869 -315 1661 150 77 0 chr9 79198549 79198835 -38663792 + AluJb SINE Alu 1 308 -4 1328 210 39 42 chr9 79198835 79199134 -38663493 + L1MB7 LINE L1 5869 6168 -16 680 248 84 40 chr9 79199213 79199463 -38663164 + MIR SINE MIR 2 262 0 292 269 138 28 chr9 79199583 79199880 -38662747 + L1ME4a LINE L1 5609 5945 -176 1898 159 0 19 chr9 79200572 79200887 -38661740 + AluSx SINE Alu 1 309 -3 21 0 0 0 chr9 79200887 79200908 -38661719 + AT_rich Low_complexity Low_complexity 1 21 0 1753 154 41 17 chr9 79201111 79201403 -38661224 + AluJb SINE Alu 1 299 -13 2046 129 3 0 chr9 79201498 79201785 -38660842 + AluSq SINE Alu 1 288 -25 2566 164 41 95 chr9 79202488 79203063 -38659564 + L1MB8 LINE L1 5458 6063 -108 1640 154 68 0 chr9 79203063 79203343 -38659284 + AluSx SINE Alu 1 299 -13 2566 164 41 95 chr9 79203343 79203421 -38659206 + L1MB8 LINE L1 6063 6031 -140 2225 104 0 3 chr9 79203421 79203719 -38658908 + AluSx SINE Alu 1 297 -15 2566 164 41 95 chr9 79203719 79203816 -38658811 + L1MB8 LINE L1 6030 6131 -40 359 150 258 17 chr9 79204267 79204387 -38658240 + L1MC4 LINE L1 7892 8040 -2 2207 99 0 0 chr9 79204509 79204823 -38657804 - AluSq SINE Alu 0 316 3 2329 104 3 0 chr9 79205543 79205852 -38656775 + AluSx SINE Alu 1 310 -2 321 269 21 0 chr9 79205872 79205965 -38656662 - Charlie8 DNA MER1_type -2276 141 47 2091 112 17 7 chr9 79205965 79206261 -38656366 + AluSc SINE Alu 1 299 -10 186 43 0 0 chr9 79206264 79206287 -38656340 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 238 305 0 0 chr9 79206532 79206614 -38656013 + L2 LINE L2 2891 2972 -300 723 267 149 45 chr9 79206668 79207043 -38655584 - L2 LINE L2 0 3313 2900 4885 145 12 4 chr9 79207840 79208638 -38653989 + L1MB7 LINE L1 5326 6130 -54 185 311 22 44 chr9 79209172 79209262 -38653365 - MIR SINE MIR -50 212 125 1082 172 36 10 chr9 79209508 79209724 -38652903 + AluJb SINE Alu 85 305 0 760 323 95 68 chr9 79209953 79210112 -38652515 + L3 LINE CR1 48 201 -1376 2255 98 3 7 chr9 79210112 79210418 -38652209 + AluSx SINE Alu 1 305 -7 760 323 95 68 chr9 79210418 79211035 -38651592 + L3 LINE CR1 201 845 -732 2544 47 0 0 chr9 79211043 79211339 -38651288 + AluY SINE Alu 1 296 -15 2149 113 7 0 chr9 79211346 79211637 -38650990 + AluSx SINE Alu 1 293 -19 222 263 18 18 chr9 79211685 79211742 -38650885 + L3 LINE CR1 960 1016 -561 271 353 79 22 chr9 79211962 79212101 -38650526 - MIR3 SINE MIR -28 180 34 369 0 0 0 chr9 79212282 79212323 -38650304 + (CA)n Simple_repeat Simple_repeat 2 42 0 414 277 110 109 chr9 79213597 79214379 -38648248 + L1M2 LINE L1 481 1144 -5705 250 224 14 61 chr9 79214674 79214821 -38647806 + G-rich Low_complexity Low_complexity 3 142 0 27 0 0 0 chr9 79214987 79215014 -38647613 + GC_rich Low_complexity Low_complexity 1 27 0 364 240 48 19 chr9 79215212 79215316 -38647311 - MIR SINE MIR -132 130 24 342 331 24 18 chr9 79215440 79215606 -38647021 - MIR SINE MIR 0 262 96 2072 100 0 34 chr9 79216009 79216300 -38646327 + AluSq SINE Alu 1 281 -32 752 233 204 39 chr9 79216380 79216822 -38645805 + L1ME4a LINE L1 5549 6063 -58 240 188 0 0 chr9 79216837 79216885 -38645742 - Alu SINE Alu -1 301 254 1463 163 35 52 chr9 79217298 79217586 -38645041 + AluJo SINE Alu 11 293 -19 206 335 125 46 chr9 79217816 79217968 -38644659 + MER5A DNA MER1_type 26 189 0 318 225 59 128 chr9 79217974 79218161 -38644466 - MLT1H LTR MaLR -3 546 373 284 238 19 76 chr9 79218462 79218567 -38644060 - MLT1K LTR MaLR -9 579 481 519 313 198 22 chr9 79219080 79219358 -38643269 - L2 LINE L2 0 3272 2946 2521 62 0 3 chr9 79219422 79219727 -38642900 + AluSq SINE Alu 1 304 -9 644 202 39 8 chr9 79219748 79219877 -38642750 - L2 LINE L2 0 3313 3181 374 275 164 37 chr9 79219947 79220136 -38642491 - MIR SINE MIR -21 241 29 1150 272 0 0 chr9 79220757 79221003 -38641624 + MIR SINE MIR 4 249 -13 185 222 0 0 chr9 79221023 79221059 -38641568 + MIR SINE MIR 227 262 0 650 221 113 77 chr9 79221084 79221148 -38641479 - MIR SINE MIR -30 232 172 1839 175 3 13 chr9 79221148 79221463 -38641164 - AluJo SINE Alu 0 312 1 650 221 113 77 chr9 79221463 79221620 -38641007 - MIR SINE MIR -90 172 3 583 342 122 30 chr9 79222544 79222971 -38639656 - L2 LINE L2 -3 3269 2804 2179 94 21 11 chr9 79222996 79223283 -38639344 + AluSc SINE Alu 5 294 -15 274 182 0 0 chr9 79223384 79223439 -38639188 + L1MB8 LINE L1 6123 6177 -1 1430 320 121 31 chr9 79223439 79224230 -38638397 - L2 LINE L2 -620 2694 1975 2409 97 0 0 chr9 79224230 79224528 -38638099 + AluSq SINE Alu 1 298 -15 1430 320 121 31 chr9 79224528 79224728 -38637899 - L2 LINE L2 -1339 1975 1794 2149 106 4 0 chr9 79224728 79225003 -38637624 - AluSg SINE Alu -21 289 14 1430 320 121 31 chr9 79225003 79225195 -38637432 - L2 LINE L2 -1520 1794 1404 505 236 64 6 chr9 79225512 79225669 -38636958 + L1MC4 LINE L1 7164 7329 -713 2414 70 0 0 chr9 79225669 79225973 -38636654 + AluSx SINE Alu 1 304 0 1354 267 90 25 chr9 79226057 79226615 -38636012 + L1MC4 LINE L1 7309 7902 -140 25 0 0 0 chr9 79226652 79226677 -38635950 + AT_rich Low_complexity Low_complexity 1 25 0 446 298 44 11 chr9 79227132 79227313 -38635314 - MER5A DNA MER1_type 0 189 3 448 243 194 7 chr9 79227357 79227501 -38635126 + MER5A DNA MER1_type 18 188 -1 349 255 69 93 chr9 79227745 79227799 -38634828 + MIR SINE MIR 43 97 -165 968 55 31 0 chr9 79227799 79227926 -38634701 - L1MB4 LINE L1 0 6180 6050 349 255 69 93 chr9 79227926 79228087 -38634540 + MIR SINE MIR 97 253 -9 295 296 0 0 chr9 79228587 79228668 -38633959 - MIR3 SINE MIR -35 173 93 798 165 0 23 chr9 79229192 79229325 -38633302 - FLAM_C SINE Alu -1 132 3 642 97 0 0 chr9 79229336 79229429 -38633198 - AluSg/x SINE Alu -1 308 216 1704 132 43 0 chr9 79229429 79229686 -38632941 - AluSx SINE Alu -44 268 1 313 289 0 0 chr9 79229699 79229775 -38632852 + MIR SINE MIR 18 93 -169 398 212 102 0 chr9 79229783 79229901 -38632726 - MIR SINE MIR 0 262 133 1999 84 0 60 chr9 79230596 79230881 -38631746 - AluSg SINE Alu -19 291 24 452 85 0 0 chr9 79230881 79230940 -38631687 - Alu SINE Alu -258 60 2 299 219 124 9 chr9 79231694 79231799 -38630828 - MIR SINE MIR -50 212 96 2252 88 0 3 chr9 79233132 79233441 -38629186 - AluSq SINE Alu 0 308 1 213 317 53 11 chr9 79234122 79234234 -38628393 + MIR SINE MIR 14 130 -78 467 301 34 23 chr9 79234294 79234470 -38628157 + MER5B DNA MER1_type 1 178 0 320 250 0 0 chr9 79234744 79234820 -38627807 + MER5A DNA MER1_type 13 88 -101 2456 61 3 3 chr9 79235356 79235653 -38626974 + AluY SINE Alu 1 297 -14 348 349 34 0 chr9 79235681 79235830 -38626797 - MIR3 SINE MIR -25 183 30 682 244 73 77 chr9 79236283 79236761 -38625866 + MARNA DNA Mariner 10 572 -14 182 318 0 0 chr9 79238675 79238719 -38623908 + L2 LINE L2 3224 3267 -5 187 339 107 30 chr9 79239301 79239469 -38623158 + L2 LINE L2 3088 3268 -4 1986 158 6 3 chr9 79239818 79240129 -38622498 - AluSx SINE Alu 0 312 1 388 234 307 5 chr9 79240215 79240407 -38622220 - MIR SINE MIR -1 261 12 2177 121 0 3 chr9 79241198 79241495 -38621132 - AluSx SINE Alu -16 296 1 233 350 40 10 chr9 79242191 79242291 -38620336 + L3 LINE CR1 1094 1196 -381 1358 181 55 7 chr9 79242402 79242711 -38619916 - MER33 DNA MER1_type 0 324 1 2367 94 3 0 chr9 79244622 79244921 -38617706 - AluSp SINE Alu -13 300 1 2184 110 0 7 chr9 79245209 79245510 -38617117 - AluJo SINE Alu -9 303 5 2341 81 0 17 chr9 79246389 79246687 -38615940 - AluSq SINE Alu -20 293 1 2152 80 0 0 chr9 79246844 79247107 -38615520 + AluSg SINE Alu 40 302 -8 1294 174 24 105 chr9 79247114 79247448 -38615179 + AluYb8 SINE Alu 1 307 -11 233 189 19 0 chr9 79247494 79247547 -38615080 + MIR3 SINE MIR 119 172 -36 214 248 4 76 chr9 79247661 79247766 -38614861 - MIR SINE MIR -68 140 39 2299 82 0 38 chr9 79248220 79248536 -38614091 + AluY SINE Alu 1 304 -7 299 285 99 12 chr9 79249610 79249782 -38612845 - L1ME LINE L1 -427 5694 5508 222 128 0 0 chr9 79250216 79250255 -38612372 + (CATATA)n Simple_repeat Simple_repeat 4 42 0 257 194 167 0 chr9 79250545 79250617 -38612010 - MIR SINE MIR -109 153 70 2269 104 0 0 chr9 79250933 79251220 -38611407 + AluSx SINE Alu 1 287 -25 190 245 0 0 chr9 79251595 79251644 -38610983 + L2 LINE L2 3217 3265 -7 970 191 12 0 chr9 79251727 79251895 -38610732 + FAM SINE Alu 1 170 -5 1238 219 31 99 chr9 79252132 79252548 -38610079 + MLT1B LTR MaLR 3 390 0 366 254 91 9 chr9 79252774 79252884 -38609743 + MIR SINE MIR 30 148 -114 287 104 21 0 chr9 79253031 79253079 -38609548 + (TG)n Simple_repeat Simple_repeat 2 50 0 220 269 0 45 chr9 79253120 79253187 -38609440 - L2 LINE L2 -8 3305 3242 2005 132 7 26 chr9 79253491 79253795 -38608832 - AluSx SINE Alu -14 298 1 1507 181 10 27 chr9 79254362 79254661 -38607966 + AluJo SINE Alu 1 294 -18 221 250 125 0 chr9 79254664 79254728 -38607899 + MIR SINE MIR 3 74 -188 22 0 0 0 chr9 79254756 79254778 -38607849 + AT_rich Low_complexity Low_complexity 1 22 0 299 291 112 37 chr9 79254788 79254922 -38607705 - MIR3 SINE MIR -52 156 13 261 222 125 0 chr9 79255382 79255454 -38607173 + L2 LINE L2 3225 3305 -8 1647 172 24 20 chr9 79256438 79256735 -38605892 + AluJo SINE Alu 4 301 -11 2479 90 3 0 chr9 79256735 79257047 -38605580 + AluSp SINE Alu 1 313 0 348 63 5 0 chr9 79257720 79257771 -38604856 - Alu SINE Alu -258 45 1 2283 115 0 10 chr9 79258034 79258348 -38604279 + AluSx SINE Alu 1 311 -1 430 323 31 0 chr9 79258501 79258631 -38603996 + L2 LINE L2 3136 3269 -3 235 243 0 43 chr9 79258720 79258790 -38603837 - MIR SINE MIR -176 86 20 293 252 47 19 chr9 79259921 79260028 -38602599 + MIR SINE MIR 152 261 -1 3347 144 109 126 chr9 79260630 79260732 -38601895 + L1MC3 LINE L1 6865 6967 -818 2189 117 7 0 chr9 79260732 79261030 -38601597 - AluSq SINE Alu -13 300 1 3347 144 109 126 chr9 79261030 79261185 -38601442 + L1MC3 LINE L1 6967 7123 -662 329 270 22 0 chr9 79261185 79261274 -38601353 + MLT1J LTR MaLR 35 125 -442 3347 144 109 126 chr9 79261274 79261864 -38600763 + L1MC3 LINE L1 7123 7785 0 2598 44 0 0 chr9 79262198 79262496 -38600131 + AluY SINE Alu 1 298 -13 894 236 75 10 chr9 79262498 79262790 -38599837 - HsTC2 DNA Tc2 -3 1895 1585 250 139 0 0 chr9 79262791 79262827 -38599800 - HsTC2 DNA Tc2 -580 1318 1283 467 189 117 18 chr9 79262834 79262945 -38599682 - HsTC2 DNA Tc2 -1762 136 15 2394 96 0 6 chr9 79263121 79263434 -38599193 - AluSx SINE Alu -1 311 1 358 266 7 77 chr9 79263738 79263881 -38598746 + MLT1J LTR MaLR 287 419 -92 2079 156 50 31 chr9 79263891 79263936 -38598691 - L1MB4 LINE L1 0 6180 6137 2371 70 17 0 chr9 79263936 79264234 -38598393 - AluSg SINE Alu -7 303 1 2079 156 50 31 chr9 79264234 79264644 -38597983 - L1MB4 LINE L1 -43 6137 5716 699 132 35 0 chr9 79264644 79264758 -38597869 - AluJb SINE Alu -12 300 183 438 307 70 22 chr9 79264783 79265011 -38597616 - MIR SINE MIR -12 250 12 200 204 0 23 chr9 79266187 79266231 -38596396 + GA-rich Low_complexity Low_complexity 6 48 0 2359 81 3 10 chr9 79266554 79266861 -38595766 + AluY SINE Alu 1 305 -6 2390 88 23 7 chr9 79266932 79267239 -38595388 - AluSx SINE Alu 0 312 1 407 331 111 30 chr9 79267239 79267834 -38594793 + L2 LINE L2 2422 3059 -254 322 286 9 9 chr9 79267903 79268008 -38594619 + LTR33 LTR ERVL 15 119 -402 586 273 66 5 chr9 79268142 79268340 -38594287 + LTR33 LTR ERVL 307 516 -5 24 67 0 0 chr9 79268658 79268703 -38593924 + AT_rich Low_complexity Low_complexity 1 45 0 301 196 0 152 chr9 79268983 79269095 -38593532 - MIR3 SINE MIR -42 166 72 2780 109 40 5 chr9 79269406 79269460 -38593167 - MER83 LTR ERV1 -12 436 385 2080 140 3 10 chr9 79269460 79269774 -38592853 + AluSx SINE Alu 1 312 0 2780 109 40 5 chr9 79269774 79270140 -38592487 - MER83 LTR ERV1 -63 385 1 1142 203 19 27 chr9 79270251 79270512 -38592115 - L1ME2 LINE L1 -11 6153 5895 888 196 12 0 chr9 79270514 79270687 -38591940 - L1ME2 LINE L1 -322 5842 5668 977 76 83 0 chr9 79270689 79270833 -38591794 - MER30 DNA MER1_type -74 156 1 1173 188 161 54 chr9 79270836 79270907 -38591720 - L1ME2 LINE L1 -519 5645 5583 2509 60 3 0 chr9 79270907 79271209 -38591418 + AluY SINE Alu 1 303 -8 1173 188 161 54 chr9 79271209 79271607 -38591020 - L1ME2 LINE L1 -581 5583 5119 1895 144 0 0 chr9 79271649 79271919 -38590708 + AluJb SINE Alu 7 276 -36 2252 118 0 7 chr9 79272012 79272318 -38590309 + AluSx SINE Alu 1 304 -8 260 329 121 18 chr9 79272680 79272960 -38589667 + L1MC/D LINE L1 5411 5719 -2089 816 161 0 0 chr9 79272985 79273103 -38589524 + FLAM_C SINE Alu 1 118 -25 1878 155 28 63 chr9 79273139 79273398 -38589229 - HsTC2 DNA Tc2 2 1900 1633 1941 150 7 3 chr9 79273398 79273698 -38588929 + AluJb SINE Alu 1 301 -11 1878 155 28 63 chr9 79273698 79273897 -38588730 - HsTC2 DNA Tc2 -265 1633 1282 2578 118 57 45 chr9 79273922 79274345 -38588282 - MSTA LTR MaLR 0 428 1 657 197 0 15 chr9 79274567 79274704 -38587923 - L1MB8 LINE L1 -2 6176 6042 355 272 37 37 chr9 79275211 79275347 -38587280 + L2 LINE L2 3170 3305 -8 236 213 75 25 chr9 79275714 79275794 -38586833 - LTR65 LTR ERV1 -54 615 532 873 199 13 6 chr9 79275920 79276076 -38586551 + FRAM SINE Alu 1 157 -19 1922 158 10 0 chr9 79276339 79276631 -38585996 + AluJb SINE Alu 7 301 -11 238 109 0 87 chr9 79276820 79276866 -38585761 + L1MB8 LINE L1 6131 6172 -6 * 256 28 56 0 chr9 79276837 79276873 -38585754 + L1MB7 LINE L1 6146 6183 -1 304 59 39 0 chr9 79276873 79276924 -38585703 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 27 0 0 0 chr9 79277388 79277415 -38585212 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr9 79277474 79277502 -38585125 + AT_rich Low_complexity Low_complexity 1 28 0 261 279 29 41 chr9 79277681 79277853 -38584774 - L1MC4a LINE L1 -1886 5922 5753 493 278 35 92 chr9 79277928 79278224 -38584403 - L1MC4a LINE L1 -376 5745 5473 1924 141 35 0 chr9 79278224 79278514 -38584113 + AluJb SINE Alu 6 305 -7 493 278 35 92 chr9 79278514 79278587 -38584040 - L1MC4a LINE L1 -648 5473 5397 207 0 0 0 chr9 79278662 79278685 -38583942 + (TG)n Simple_repeat Simple_repeat 2 24 0 620 332 16 0 chr9 79279021 79279214 -38583413 + LTR16B LTR ERVL 24 219 -245 2327 101 0 3 chr9 79279513 79279821 -38582806 + AluSx SINE Alu 5 311 -1 248 358 52 15 chr9 79279850 79279984 -38582643 - L2 LINE L2 -191 3081 2943 301 0 68 0 chr9 79280133 79280177 -38582450 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1852 61 0 4 chr9 79280179 79280402 -38582225 - AluY SINE Alu -28 283 60 480 35 0 0 chr9 79280402 79280460 -38582167 + (TA)n Simple_repeat Simple_repeat 2 59 0 32 0 0 0 chr9 79280511 79280543 -38582084 + AT_rich Low_complexity Low_complexity 1 32 0 1193 163 25 0 chr9 79280571 79280773 -38581854 - MER2 DNA MER2_type -135 210 4 342 236 64 55 chr9 79280801 79280911 -38581716 + MLT1J2 LTR MaLR 129 239 -211 3838 132 8 58 chr9 79281113 79281757 -38580870 + LTR9 LTR ERV1 1 612 0 791 253 77 32 chr9 79281805 79282090 -38580537 + LTR16A1 LTR ERVL 156 453 -4 320 179 0 0 chr9 79282292 79282348 -38580279 + MER117 DNA MER1_type 66 121 -76 679 290 76 18 chr9 79282593 79282817 -38579810 + MIR SINE MIR 25 261 -1 7443 63 13 210 chr9 79283184 79284825 -38577802 - SVA Other Other -3 1383 66 532 156 170 14 chr9 79284929 79285070 -38577557 + LTR50 LTR ERVL 632 794 -1 848 204 128 20 chr9 79285324 79285520 -38577107 + MSTD LTR MaLR 180 396 0 2375 86 0 0 chr9 79285648 79285940 -38576687 + AluSx SINE Alu 1 292 -20 678 286 77 17 chr9 79286040 79286274 -38576353 + MLT1J LTR MaLR 187 434 -77 803 231 86 14 chr9 79286308 79286547 -38576080 - L1ME LINE L1 -576 5594 5339 2120 156 30 62 chr9 79286551 79286955 -38575672 - MER57A LTR ERV1 -12 391 1 857 166 7 13 chr9 79286982 79287133 -38575494 - MER57A-int LTR ERV1 -7 7530 7381 227 107 0 107 chr9 79287133 79287144 -38575483 - LTR54B LTR ERV1 -215 283 272 2140 139 0 0 chr9 79287144 79287439 -38575188 - AluSx SINE Alu -17 295 1 227 107 0 107 chr9 79287439 79287483 -38575144 - LTR54B LTR ERV1 -226 272 234 300 182 18 0 chr9 79287483 79287538 -38575089 - MER57A-int LTR ERV1 -202 7335 7280 666 146 23 31 chr9 79287539 79287669 -38574958 - LTR54B LTR ERV1 -367 131 3 1047 172 77 29 chr9 79287671 79287836 -38574791 - MER57A-int LTR ERV1 -393 7144 6965 2250 151 37 0 chr9 79287836 79288187 -38574440 + THE1B LTR MaLR 1 364 0 1047 172 77 29 chr9 79288187 79288230 -38574397 - MER57A-int LTR ERV1 -572 6965 6926 * 2443 191 14 64 chr9 79288217 79288621 -38574006 - MER57A-int LTR ERV1 -933 6604 6234 1510 168 0 90 chr9 79288621 79288942 -38573685 - AluJo SINE Alu -20 292 1 2443 191 14 64 chr9 79288942 79289096 -38573531 - MER57A-int LTR ERV1 -1303 6234 6074 2317 169 136 4 chr9 79289096 79289546 -38573081 + LTR22 LTR ERVK 1 509 0 6416 101 34 1 chr9 79289546 79290422 -38572205 + HERVK22 LTR ERVK 1 905 -5932 * 20527 87 11 6 chr9 79290413 79291008 -38571619 + HERVK22 LTR ERVK 2323 2913 -3924 2512 67 0 0 chr9 79291008 79291305 -38571322 - AluY SINE Alu -14 297 1 20527 87 11 6 chr9 79291305 79293439 -38569188 + HERVK22 LTR ERVK 2913 5068 -1769 2091 141 0 2 chr9 79293419 79293835 -38568792 + HERVKC4 LTR ERVK 3170 6837 0 * 1753 184 81 5 chr9 79293839 79294284 -38568343 + LTR22 LTR ERVK 8 507 -2 1546 169 0 8 chr9 79294286 79294540 -38568087 - MER57A-int LTR ERV1 -1458 6079 5828 2348 166 74 17 chr9 79294540 79294943 -38567684 - MSTB LTR MaLR 0 426 1 2351 180 24 19 chr9 79294956 79295373 -38567254 - MSTB LTR MaLR 0 426 8 7049 164 25 62 chr9 79295706 79295945 -38566682 - MER57A-int LTR ERV1 -1714 5823 5577 2315 107 3 0 chr9 79295945 79296254 -38566373 - AluSg SINE Alu 0 310 1 7049 164 25 62 chr9 79296254 79297271 -38565356 - MER57A-int LTR ERV1 -1960 5577 4637 2410 81 7 3 chr9 79297271 79297581 -38565046 - AluY SINE Alu 0 311 1 7049 164 25 62 chr9 79297581 79297911 -38564716 - MER57A-int LTR ERV1 -2900 4637 4296 293 211 14 0 chr9 79297972 79298043 -38564584 - LTR49-int LTR ERV1 -6329 1791 1720 702 73 10 10 chr9 79298051 79298147 -38564480 - L1PB3 LINE L1 -5 6149 6054 2027 171 0 0 chr9 79298194 79298503 -38564124 - AluJb SINE Alu -3 309 1 4950 141 50 1 chr9 79298568 79299356 -38563271 - L1PA15 LINE L1 -1 6164 5339 408 202 119 18 chr9 79299356 79299465 -38563162 - LTR49-int LTR ERV1 -6450 1670 1551 483 243 45 0 chr9 79299746 79299857 -38562770 - LTR49-int LTR ERV1 -2867 3464 3349 913 209 30 60 chr9 79299907 79300175 -38562452 - LTR49-int LTR ERV1 -2991 3340 3081 602 199 153 6 chr9 79300278 79300454 -38562173 - MER57A LTR ERV1 -5 398 197 226 88 29 0 chr9 79300441 79300475 -38562152 - Alu SINE Alu -267 35 1 * 298 202 75 0 chr9 79300476 79300582 -38562045 - L1P LINE L1 -1855 4291 4176 380 252 41 16 chr9 79300661 79300784 -38561843 + LTR67 LTR ERVL 428 553 -4 2012 164 137 12 chr9 79301313 79301722 -38560905 + MLT1C LTR MaLR 4 463 -4 704 230 115 61 chr9 79301968 79302091 -38560536 + Charlie8 DNA MER1_type 1 116 -214 1763 207 47 23 chr9 79302091 79302478 -38560149 + MSTD LTR MaLR 1 396 0 704 230 115 61 chr9 79302478 79302615 -38560012 + Charlie8 DNA MER1_type 116 275 -55 2270 247 47 42 chr9 79302712 79302909 -38559718 - L2 LINE L2 -3 3310 3116 1738 27 0 0 chr9 79302909 79303097 -38559530 - L1PA3 LINE L1 -3 6152 5965 2270 247 47 42 chr9 79303097 79303423 -38559204 - L2 LINE L2 -197 3116 2793 2359 141 62 48 chr9 79303423 79303841 -38558786 + MSTA LTR MaLR 1 424 -4 2270 247 47 42 chr9 79303841 79304380 -38558247 - L2 LINE L2 -520 2793 2243 210 145 14 145 chr9 79304392 79304461 -38558166 + L2 LINE L2 2186 2245 -1069 183 42 0 0 chr9 79306917 79306941 -38555686 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 222 254 218 3 chr9 79307300 79307448 -38555179 - MIR SINE MIR -28 234 16 1426 190 21 7 chr9 79309355 79309675 -38552952 - AluJb SINE Alu 0 324 1 2464 183 23 33 chr9 79309864 79310383 -38552244 - L1MB7 LINE L1 -9 6175 5662 23 0 0 0 chr9 79312419 79312442 -38550185 + AT_rich Low_complexity Low_complexity 1 23 0 2293 101 3 3 chr9 79313477 79313783 -38548844 - AluSq SINE Alu -7 306 1 27 0 0 0 chr9 79314258 79314285 -38548342 + AT_rich Low_complexity Low_complexity 1 27 0 525 213 11 0 chr9 79314388 79314482 -38548145 - AluJ/FLAM SINE Alu -216 96 2 355 207 12 24 chr9 79314895 79314977 -38547650 - L1MB7 LINE L1 -1198 4948 4868 195 129 0 0 chr9 79314979 79315010 -38547617 + (T)n Simple_repeat Simple_repeat 1 31 0 2252 83 40 7 chr9 79315180 79315481 -38547146 - AluY SINE Alu 0 311 1 904 158 0 26 chr9 79315772 79315924 -38546703 - MER3 DNA MER1_type -60 149 2 1121 202 119 175 chr9 79315925 79316468 -38546159 - L2 LINE L2 -52 3261 2652 226 291 43 71 chr9 79316468 79316609 -38546018 - L1MC5 LINE L1 -59 7902 7766 1121 202 119 175 chr9 79316609 79316977 -38545650 - L2 LINE L2 -661 2652 2265 235 309 52 10 chr9 79316978 79317075 -38545552 - L2 LINE L2 -1159 2155 2055 2150 120 3 0 chr9 79317081 79317373 -38545254 + AluSx SINE Alu 1 293 -19 392 211 14 0 chr9 79317400 79317471 -38545156 - MER81 DNA DNA -41 73 2 22 35 0 0 chr9 79317829 79317858 -38544769 + AT_rich Low_complexity Low_complexity 1 29 0 209 271 51 0 chr9 79318412 79318471 -38544156 - MIR3 SINE MIR -25 183 122 437 125 27 9 chr9 79318960 79319072 -38543555 + (TA)n Simple_repeat Simple_repeat 1 114 0 2048 145 26 0 chr9 79319073 79319376 -38543251 - AluSx SINE Alu -1 311 1 1676 237 219 24 chr9 79319410 79319448 -38543179 - LTR50 LTR ERVL -7 788 759 2142 110 7 14 chr9 79319448 79319739 -38542888 - AluSg SINE Alu -21 289 1 1676 237 219 24 chr9 79319739 79320358 -38542269 - LTR50 LTR ERVL -36 759 3 381 288 56 32 chr9 79321048 79321173 -38541454 - L2 LINE L2 -6 3266 3139 3691 132 15 6 chr9 79321574 79322095 -38540532 - MER1A DNA MER1_type 0 527 2 1703 106 9 4 chr9 79322146 79322407 -38540220 - AluSq SINE Alu 0 317 56 674 99 45 18 chr9 79322489 79322600 -38540027 - L1MB4 LINE L1 -1 6179 6066 2799 162 44 52 chr9 79322612 79322849 -38539778 + Charlie1a DNA MER1_type 95 333 -2428 2040 107 17 3 chr9 79322849 79323140 -38539487 + AluY SINE Alu 3 297 -14 2799 162 44 52 chr9 79323140 79323383 -38539244 + Charlie1a DNA MER1_type 333 572 -2189 2067 150 0 0 chr9 79323383 79323690 -38538937 + AluSx SINE Alu 1 307 -5 2799 162 44 52 chr9 79323690 79323799 -38538828 + Charlie1a DNA MER1_type 572 680 -775 585 286 57 46 chr9 79323903 79324370 -38538257 - L1MEc LINE L1 -865 1642 1160 22 35 0 0 chr9 79324669 79324698 -38537929 + GC_rich Low_complexity Low_complexity 1 29 0 3679 157 66 16 chr9 79325231 79325901 -38536726 - L1MB5 LINE L1 0 6174 5472 2098 100 54 0 chr9 79326096 79326375 -38536252 - AluSx SINE Alu 0 312 19 2557 40 0 16 chr9 79326736 79327039 -38535588 - AluY SINE Alu -13 298 1 974 115 0 0 chr9 79327157 79327287 -38535340 + AluJo SINE Alu 12 141 -171 240 188 0 31 chr9 79327305 79327369 -38535258 + (TAAA)n Simple_repeat Simple_repeat 2 63 0 219 69 0 0 chr9 79327580 79327609 -38535018 + (T)n Simple_repeat Simple_repeat 1 29 0 1802 173 3 22 chr9 79327966 79328284 -38534343 - AluJo SINE Alu 0 312 1 2386 87 3 3 chr9 79328303 79328612 -38534015 - AluSg SINE Alu 0 310 2 234 209 60 0 chr9 79328813 79328880 -38533747 - MLT1K LTR MaLR -8 580 510 1478 181 98 4 chr9 79328947 79329224 -38533403 + AluJb SINE Alu 1 303 -9 2210 109 0 0 chr9 79329315 79329609 -38533018 - AluSx SINE Alu -18 294 1 2175 130 0 0 chr9 79330188 79330487 -38532140 + AluSx SINE Alu 2 300 -12 267 197 16 0 chr9 79330508 79330569 -38532058 + MIR SINE MIR 154 215 -47 2574 58 0 0 chr9 79330624 79330933 -38531694 - AluY SINE Alu 0 311 3 2401 100 3 0 chr9 79331639 79331948 -38530679 - AluSg SINE Alu 0 310 1 1170 240 32 18 chr9 79332009 79332288 -38530339 - MLT1F LTR MaLR 0 542 260 973 236 191 48 chr9 79332516 79332998 -38529629 + MLT2F LTR ERVL 8 558 -105 287 164 16 0 chr9 79333312 79333373 -38529254 + GA-rich Low_complexity Low_complexity 2 63 0 258 227 15 0 chr9 79333373 79333439 -38529188 + L1MC3 LINE L1 5723 5789 -2019 1217 156 67 118 chr9 79333585 79333899 -38528728 - AluJo SINE Alu -10 302 5 280 319 106 8 chr9 79334183 79334543 -38528084 + L1M4 LINE L1 4625 5019 -1127 726 183 44 0 chr9 79334609 79334746 -38527881 + MER6 DNA MER2_type 2 865 0 746 203 0 14 chr9 79334827 79334975 -38527652 + L1MC3 LINE L1 6705 6850 -935 13643 204 20 7 chr9 79335077 79338267 -38524360 - L1 LINE L1 -1157 4989 1773 18616 48 1 0 chr9 79338384 79341323 -38521304 + L1PA5 LINE L1 3199 6143 -11 5670 61 3 1 chr9 79341329 79342006 -38520621 + L1PA6 LINE L1 5474 6151 -3 3280 99 27 2 chr9 79342026 79342510 -38520117 + L1MA3 LINE L1 5488 5983 -322 290 77 0 0 chr9 79342508 79342547 -38520080 + L1MA1 LINE L1 6256 6294 -8 * 1873 110 97 1 chr9 79342889 79343207 -38519420 + L1MA2 LINE L1 5669 5941 -224 2096 141 30 3 chr9 79343316 79343684 -38518943 - L1 LINE L1 -873 5273 4896 7131 163 15 87 chr9 79343698 79345219 -38517408 - MER52A LTR ERV1 0 1755 375 669 254 0 0 chr9 79345223 79345361 -38517266 - MER52A LTR ERV1 -1617 138 1 4308 136 25 12 chr9 79345362 79345526 -38517101 - L1 LINE L1 -1276 4870 4710 222 62 0 0 chr9 79345526 79345558 -38517069 + (TTG)n Simple_repeat Simple_repeat 2 33 0 4308 136 25 12 chr9 79345558 79346263 -38516364 - L1 LINE L1 -1436 4710 3831 * 4500 148 29 1 chr9 79346236 79346985 -38515642 + L1MA6 LINE L1 5531 6300 0 6447 73 12 1 chr9 79347159 79348145 -38514482 - L1P3 LINE L1 -647 5507 4510 * 8652 106 5 9 chr9 79348143 79349414 -38513213 - L1P3 LINE L1 -3477 2669 1405 545 242 16 8 chr9 79349557 79349685 -38512942 + MER94 DNA DNA 6 134 0 258 81 0 0 chr9 79350076 79350113 -38512514 + (TG)n Simple_repeat Simple_repeat 2 38 0 2312 65 0 14 chr9 79350950 79351242 -38511385 + L1PA7 LINE L1 5867 6154 0 955 75 75 0 chr9 79351243 79351377 -38511250 - MER30 DNA MER1_type -86 144 1 238 403 104 31 chr9 79351637 79351925 -38510702 - L2 LINE L2 -390 2924 2616 304 284 76 53 chr9 79352632 79352724 -38509903 + L1MC5 LINE L1 7609 7697 -264 1683 174 56 0 chr9 79352724 79353011 -38509616 + AluJo SINE Alu 1 303 -9 304 284 76 53 chr9 79353011 79353182 -38509445 + L1MC5 LINE L1 7697 7878 -83 1817 152 26 47 chr9 79353182 79353451 -38509176 - MER7A DNA MER2_type -2692 346 86 2048 136 10 10 chr9 79353451 79353753 -38508874 + AluSx SINE Alu 1 302 -10 1817 152 26 47 chr9 79353753 79353825 -38508802 - MER7A DNA MER2_type -2952 86 14 2373 122 42 33 chr9 79354051 79354412 -38508215 + THE1B LTR MaLR 1 364 0 530 265 214 0 chr9 79354753 79354968 -38507659 - MIR SINE MIR -1 261 1 299 152 45 30 chr9 79355386 79355452 -38507175 + MLT1H LTR MaLR 13 79 -470 290 340 152 4 chr9 79356031 79356281 -38506346 + L2 LINE L2 909 1195 -2119 2596 160 41 83 chr9 79356317 79356844 -38505783 + MLT2B3 LTR ERVL 1 413 -40 258 266 16 0 chr9 79356845 79356909 -38505718 - MER2 DNA MER2_type 0 345 281 766 259 0 40 chr9 79356915 79357089 -38505538 - MER8 DNA MER2_type -72 167 1 328 127 18 0 chr9 79357114 79357169 -38505458 + MLT2B1 LTR ERVL 465 520 0 261 276 183 61 chr9 79357181 79357493 -38505134 + L2 LINE L2 1319 1668 -1646 1887 202 61 81 chr9 79357520 79358064 -38504563 + MLT2B3 LTR ERVL 2 406 -8 244 346 111 0 chr9 79358220 79358382 -38504245 + L2 LINE L2 1733 1912 -1402 219 353 0 0 chr9 79358679 79358764 -38503863 - L3 LINE CR1 -96 1481 1397 490 277 99 36 chr9 79358863 79359116 -38503511 + L1ME LINE L1 5490 5758 -363 230 344 11 44 chr9 79359276 79359327 -38503300 + L2 LINE L2 3149 3197 -75 3026 155 33 40 chr9 79359327 79359896 -38502731 - MER34B LTR ERV1 0 565 1 230 344 11 44 chr9 79359896 79359934 -38502693 + L2 LINE L2 3197 3235 -37 23 33 0 0 chr9 79360354 79360384 -38502243 + AT_rich Low_complexity Low_complexity 1 30 0 212 314 144 0 chr9 79360571 79360689 -38501938 + L2 LINE L2 2906 3040 -232 6903 47 3 3 chr9 79361154 79362028 -38500599 - L1P LINE L1 -2291 3855 2982 7425 46 5 1 chr9 79362028 79362888 -38499739 + L1PA5 LINE L1 5287 6154 0 584 259 97 94 chr9 79363175 79363568 -38499059 + MLT1J LTR MaLR 118 511 0 573 285 87 0 chr9 79363571 79363778 -38498849 + L2 LINE L2 1484 1708 -1606 417 227 0 0 chr9 79363786 79363896 -38498731 + GA-rich Low_complexity Low_complexity 3 112 0 1030 280 114 44 chr9 79363899 79364282 -38498345 + L2 LINE L2 1716 2071 -1243 2392 192 88 8 chr9 79364282 79364750 -38497877 + MLT1D LTR MaLR 1 505 0 2401 106 0 0 chr9 79364759 79365071 -38497556 - AluSx SINE Alu 0 312 1 1030 280 114 44 chr9 79365071 79365223 -38497404 + L2 LINE L2 2078 2299 -1015 297 0 0 0 chr9 79365580 79365613 -38497014 + (A)n Simple_repeat Simple_repeat 1 33 0 1273 295 135 12 chr9 79365618 79366257 -38496370 + L2 LINE L2 2381 3088 -225 1939 190 45 61 chr9 79368098 79368540 -38494087 + MER63B DNA MER1_type 1 435 -1 1114 197 133 1 chr9 79368930 79369196 -38493431 + L1MDb LINE L1 28 313 -6227 1203 149 5 5 chr9 79369196 79369397 -38493230 + L1MD1 LINE L1 6042 6242 0 10290 159 20 30 chr9 79369419 79371258 -38491369 + L1P LINE L1 11 1830 -4316 3350 30 0 0 chr9 79371258 79371631 -38490996 + L1PA2 LINE L1 5780 6152 -3 267 205 16 134 chr9 79371689 79371816 -38490811 - MER102b DNA MER1_type -1 340 229 2616 213 60 34 chr9 79371944 79372710 -38489917 + MER63C DNA MER1_type 1 786 -144 1012 129 0 0 chr9 79372770 79372910 -38489717 + FRAM SINE Alu 18 157 -19 395 194 108 0 chr9 79372928 79373021 -38489606 - L1MB7 LINE L1 -12 6172 6070 637 211 75 0 chr9 79373025 79373172 -38489455 + MER63C DNA MER1_type 774 931 0 13959 73 9 2 chr9 79373875 79375745 -38486882 + L1P LINE L1 1827 3708 -2438 1239 142 19 33 chr9 79375734 79375946 -38486681 + AluSg/x SINE Alu 66 274 -38 * 541 35 0 47 chr9 79375953 79376039 -38486588 + (GGGAA)n Simple_repeat Simple_repeat 3 84 0 243 125 0 0 chr9 79376044 79376084 -38486543 + (GA)n Simple_repeat Simple_repeat 1 40 0 1713 169 0 28 chr9 79376525 79376815 -38485812 + AluJo SINE Alu 10 291 -21 803 282 68 13 chr9 79377031 79377265 -38485362 - MIR SINE MIR 0 262 16 2188 110 13 3 chr9 79378782 79379083 -38483544 + AluSg SINE Alu 1 304 -6 195 224 41 0 chr9 79379119 79379168 -38483459 + L2 LINE L2 3217 3267 -5 369 350 73 6 chr9 79380669 79381020 -38481607 - L1MB7 LINE L1 -529 5592 5328 271 74 19 74 chr9 79381213 79381267 -38481360 - AluJ/FLAM SINE Alu -222 80 30 3769 99 4 4 chr9 79381338 79381915 -38480712 + L1PB1 LINE L1 5193 5768 -383 225 103 0 0 chr9 79381932 79381971 -38480656 - LTR66 LTR ERVL -178 432 394 258 231 0 0 chr9 79381971 79382036 -38480591 + (CA)n Simple_repeat Simple_repeat 2 66 0 2579 94 25 8 chr9 79382036 79382398 -38480229 + L1PB1 LINE L1 5782 6149 -2 780 159 8 15 chr9 79382466 79382598 -38480029 - FLAM_C SINE Alu -12 131 1 299 300 27 27 chr9 79384306 79384416 -38478211 + MER5B DNA MER1_type 69 178 0 2357 42 3 7 chr9 79385646 79385950 -38476677 + AluY SINE Alu 2 304 0 23 33 0 0 chr9 79386855 79386885 -38475742 + AT_rich Low_complexity Low_complexity 1 30 0 1276 14 7 0 chr9 79387074 79387215 -38475412 - L1PA6 LINE L1 -6 6148 6007 20175 120 28 16 chr9 79387321 79390487 -38472140 - L1P LINE L1 -2932 3214 11 2310 143 19 25 chr9 79391310 79391674 -38470953 - THE1B LTR MaLR 0 364 3 10813 103 6 82 chr9 79391676 79393385 -38469242 - THE1B-int LTR MaLR 0 1580 2 2331 118 45 20 chr9 79393386 79393741 -38468886 - THE1B LTR MaLR 0 364 1 772 259 35 13 chr9 79393814 79394042 -38468585 + MIR SINE MIR 2 234 -28 271 365 74 26 chr9 79394311 79394541 -38468086 - MIR SINE MIR -12 250 10 339 145 0 0 chr9 79395707 79395776 -38466851 + (TG)n Simple_repeat Simple_repeat 1 69 0 1966 149 0 0 chr9 79395792 79396088 -38466539 - AluSx SINE Alu -16 296 1 430 333 80 55 chr9 79396157 79396469 -38466158 + L2 LINE L2 2947 3266 -6 1603 164 141 11 chr9 79396686 79397033 -38465594 - MLT1C LTR MaLR 0 467 76 839 88 0 0 chr9 79397033 79397135 -38465492 - AluSg/x SINE Alu -62 248 147 355 172 77 0 chr9 79397151 79397224 -38465403 - MLT1C LTR MaLR -311 79 1 449 208 10 0 chr9 79398110 79398211 -38464416 - MER5B DNA MER1_type -73 105 4 1820 138 93 39 chr9 79399520 79399876 -38462751 - THE1C LTR MaLR 0 375 1 26 64 0 0 chr9 79400395 79400442 -38462185 + AT_rich Low_complexity Low_complexity 1 47 0 2376 155 47 2 chr9 79400451 79400857 -38461770 + L1MB4 LINE L1 5748 6171 -9 674 266 23 0 chr9 79401748 79401921 -38460706 + MIR SINE MIR 75 251 -11 2388 98 0 3 chr9 79403000 79403306 -38459321 - AluY SINE Alu -6 305 1 245 227 0 40 chr9 79403433 79403508 -38459119 - L1MA9 LINE L1 -30 6282 6211 2924 82 0 3 chr9 79403508 79403864 -38458763 - THE1A LTR MaLR 0 355 1 680 62 10 0 chr9 79403864 79403960 -38458667 - THE1A-int LTR MaLR 0 1580 1484 227 220 119 0 chr9 79404104 79404163 -38458464 - MER112 DNA MER1_type -194 66 1 1698 184 86 9 chr9 79404304 79404640 -38457987 + MLT1A1 LTR MaLR 4 365 0 242 261 70 21 chr9 79405940 79406082 -38456545 + L1ME LINE L1 5753 5901 -220 21 0 0 0 chr9 79407214 79407235 -38455392 + AT_rich Low_complexity Low_complexity 1 21 0 221 338 91 0 chr9 79407426 79407503 -38455124 - L2 LINE L2 -37 3235 3152 487 333 21 7 chr9 79408125 79408269 -38454358 - MIR SINE MIR -104 158 13 442 194 23 180 chr9 79408274 79408347 -38454280 + MER5A DNA MER1_type 7 90 -99 2092 114 6 22 chr9 79408347 79408662 -38453965 + AluSg SINE Alu 1 310 0 442 194 23 180 chr9 79408662 79408805 -38453822 + MER5A DNA MER1_type 90 189 0 2967 217 80 43 chr9 79410104 79410626 -38452001 + L1ME2 LINE L1 4295 4796 -1368 879 156 0 0 chr9 79410626 79410748 -38451879 - FLAM_C SINE Alu -11 122 1 2967 217 80 43 chr9 79410748 79411981 -38450646 + L1ME2 LINE L1 4796 6163 -1 268 269 8 30 chr9 79412260 79412394 -38450233 + L1M LINE L1 5296 5426 -736 2234 66 36 40 chr9 79412859 79413162 -38449465 + AluY SINE Alu 1 302 -9 1912 141 0 27 chr9 79413595 79413894 -38448733 + AluSx SINE Alu 1 291 -21 464 215 177 8 chr9 79414205 79414335 -38448292 - MIR3 SINE MIR -2 206 55 553 295 12 30 chr9 79414667 79414833 -38447794 - MER5B DNA MER1_type -14 164 2 816 224 16 36 chr9 79414843 79415035 -38447592 + MER5A DNA MER1_type 2 189 0 684 233 119 0 chr9 79415064 79415223 -38447404 + MER58A DNA MER1_type 45 222 -2 411 256 202 0 chr9 79415229 79415358 -38447269 - MER5A DNA MER1_type -2 187 33 2290 111 0 0 chr9 79415397 79415695 -38446932 + AluSx SINE Alu 14 311 -1 237 65 0 0 chr9 79415698 79415729 -38446898 + (GGAA)n Simple_repeat Simple_repeat 3 33 0 1304 163 116 0 chr9 79415729 79416006 -38446621 - MER33 DNA MER1_type -15 309 1 1360 199 89 30 chr9 79416127 79416464 -38446163 + LTR2B LTR ERV1 32 388 -102 7571 196 145 12 chr9 79416564 79418480 -38444147 - L1PBa LINE L1 -4688 2175 6 3351 88 62 69 chr9 79418490 79418690 -38443937 - L1MA2 LINE L1 -46 6258 6058 2265 170 70 5 chr9 79418690 79419089 -38443538 + MSTA LTR MaLR 4 428 0 3351 88 62 69 chr9 79419089 79419488 -38443139 - L1MA2 LINE L1 -246 6058 5669 290 77 0 0 chr9 79419830 79419869 -38442758 - L1MA3 LINE L1 -9 7715 7677 * 3307 97 25 2 chr9 79419867 79420352 -38442275 - L1MA3 LINE L1 -322 7402 6907 5849 53 1 1 chr9 79420372 79421050 -38441577 - L1PA6 LINE L1 -3 6151 5474 35268 71 6 5 chr9 79421056 79423119 -38439508 - L1PA5 LINE L1 -11 6143 4084 2876 16 0 0 chr9 79423119 79423430 -38439197 - AluYa5 SINE Alu 0 311 1 35268 71 6 5 chr9 79423430 79427477 -38435150 - L1PA5 LINE L1 -2070 4084 2 7646 144 19 100 chr9 79427469 79429367 -38433260 - L1MA3 LINE L1 -743 6822 5219 * 2173 129 0 0 chr9 79429367 79429661 -38432966 - AluSx SINE Alu -18 294 1 7646 144 19 100 chr9 79429661 79429798 -38432829 - L1MA3 LINE L1 -2346 5219 5073 1353 188 75 4 chr9 79429793 79430048 -38432579 - L1MA3 LINE L1 -7120 445 173 * 2091 136 39 30 chr9 79430053 79430414 -38432213 - THE1B LTR MaLR 0 364 1 11409 100 6 17 chr9 79430420 79431627 -38431000 - THE1B-int LTR MaLR -7 1573 387 1843 157 0 11 chr9 79431627 79431908 -38430719 + AluSx SINE Alu 1 278 -34 11409 100 6 17 chr9 79431908 79432291 -38430336 - THE1B-int LTR MaLR -1193 387 1 2032 149 36 30 chr9 79432291 79432653 -38429974 - THE1B LTR MaLR 0 364 1 871 146 33 0 chr9 79432655 79432806 -38429821 - L1MA3 LINE L1 -7395 170 15 233 344 86 16 chr9 79433680 79433808 -38428819 + L2 LINE L2 2917 3053 -219 2697 88 3 0 chr9 79434620 79434974 -38427653 + THE1A LTR MaLR 1 355 0 231 284 53 95 chr9 79435815 79436005 -38426622 + MIR SINE MIR 68 249 -13 3493 135 44 3 chr9 79436049 79436642 -38425985 - L1MA4 LINE L1 -6 6294 5678 1184 223 41 44 chr9 79437664 79437982 -38424645 + MER58B DNA MER1_type 13 329 -12 266 200 40 0 chr9 79438148 79438198 -38424429 + L2 LINE L2 3262 3313 0 351 290 80 46 chr9 79438647 79438941 -38423686 - MLT1L LTR MaLR -135 480 111 429 294 32 8 chr9 79439817 79439943 -38422684 - MIR3 SINE MIR -22 186 58 2275 121 30 27 chr9 79439950 79440356 -38422271 + L1MA3 LINE L1 5899 6305 0 6157 238 45 13 chr9 79440582 79440651 -38421976 - L1PA3 LINE L1 -7 6327 6262 369 0 0 0 chr9 79440651 79440692 -38421935 + (CA)n Simple_repeat Simple_repeat 2 42 0 6157 238 45 13 chr9 79440692 79440798 -38421829 - L1PA3 LINE L1 -72 6262 6161 6025 91 37 11 chr9 79440798 79442453 -38420174 - L1PA14 LINE L1 -1 6160 4465 * 7714 19 1 0 chr9 79442449 79444044 -38418583 - L1PA3 LINE L1 -2 6153 4557 6157 238 45 13 chr9 79442453 79444851 -38417776 - L1PA3 LINE L1 -173 6161 5304 8236 30 0 0 chr9 79444851 79445844 -38416783 + L1PA3 LINE L1 4289 5281 -865 6668 174 19 12 chr9 79445843 79447135 -38415492 - L1PA3 LINE L1 -1671 4475 3176 * 1055 262 117 16 chr9 79447156 79447763 -38414864 - L1MEc LINE L1 -4965 1431 764 335 276 59 29 chr9 79448199 79448369 -38414258 - L1ME4a LINE L1 -157 5964 5790 261 244 35 9 chr9 79448722 79448837 -38413790 - L1ME4a LINE L1 -756 5390 5273 1472 214 35 40 chr9 79449116 79449486 -38413141 - MLT1B LTR MaLR -22 368 1 180 0 0 0 chr9 79449495 79449515 -38413112 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 2644 116 12 5 chr9 79449521 79449925 -38412702 - L1PB1 LINE L1 0 6151 5745 22 35 0 0 chr9 79450006 79450035 -38412592 + AT_rich Low_complexity Low_complexity 1 29 0 1158 285 87 43 chr9 79450210 79451256 -38411371 - L1MEd LINE L1 -4617 1512 420 1848 184 58 3 chr9 79452042 79452384 -38410243 - MLT1A1 LTR MaLR -4 361 1 279 339 229 0 chr9 79453320 79453429 -38409198 + L2 LINE L2 3139 3272 0 329 135 0 19 chr9 79454060 79454112 -38408515 - L2 LINE L2 -8 3305 3255 23 68 0 0 chr9 79455358 79455402 -38407225 + AT_rich Low_complexity Low_complexity 1 44 0 197 298 111 41 chr9 79455607 79455778 -38406849 + L2 LINE L2 3130 3312 -1 * 283 162 54 40 chr9 79455771 79455845 -38406782 + MIR SINE MIR 181 255 -7 186 71 0 0 chr9 79456730 79456758 -38405869 + (CA)n Simple_repeat Simple_repeat 1 28 0 22722 49 0 0 chr9 79457082 79460743 -38401884 + L1PA5 LINE L1 2490 6152 -2 1664 152 29 11 chr9 79460806 79460972 -38401655 - AluSx SINE Alu 0 307 132 1732 123 0 8 chr9 79460972 79461225 -38401402 - AluSx SINE Alu -11 301 51 1664 152 29 11 chr9 79461225 79461358 -38401269 - AluSx SINE Alu -175 132 3 21 0 0 0 chr9 79461433 79461454 -38401173 + AT_rich Low_complexity Low_complexity 1 21 0 326 260 62 26 chr9 79462599 79462791 -38399836 - L1MC5 LINE L1 -36 7925 7727 336 136 0 0 chr9 79462794 79462852 -38399775 + Tigger2 DNA MER2_type 4 49 -2669 2891 137 21 0 chr9 79462857 79463287 -38399340 + Tigger2 DNA MER2_type 2280 2718 0 729 266 35 53 chr9 79463328 79463726 -38398901 - L1MC5 LINE L1 -298 7663 7273 412 201 66 27 chr9 79463822 79463981 -38398646 - L1MC5 LINE L1 -728 7233 7087 291 111 37 0 chr9 79466500 79466554 -38396073 + L1MA9 LINE L1 6026 6081 -231 413 129 194 0 chr9 79466556 79466649 -38395978 + L1MA9 LINE L1 6180 6290 -22 2325 87 0 3 chr9 79466674 79466972 -38395655 + AluSq SINE Alu 3 299 -14 292 282 0 73 chr9 79466993 79467103 -38395524 + MIR SINE MIR 161 262 0 4692 179 23 28 chr9 79467387 79469191 -38393436 + L1MA9 LINE L1 4483 6274 -38 2316 110 26 26 chr9 79469224 79469615 -38393012 + L1PA4 LINE L1 5764 6154 -1 29 0 0 0 chr9 79469700 79469729 -38392898 + AT_rich Low_complexity Low_complexity 1 29 0 329 332 116 26 chr9 79470048 79470316 -38392311 + MER102b DNA MER1_type 1 292 -49 247 318 45 0 chr9 79470706 79470816 -38391811 + L1ME LINE L1 5471 5585 -599 1825 112 52 4 chr9 79470887 79471203 -38391424 + AluSx SINE Alu 1 329 0 247 283 50 0 chr9 79471217 79471316 -38391311 + L1ME LINE L1 5716 5819 -302 2244 224 75 14 chr9 79471614 79472721 -38389906 - L1MD2 LINE L1 -10 6154 4942 1591 182 14 24 chr9 79472721 79473018 -38389609 - AluJo SINE Alu -16 296 3 2244 224 75 14 chr9 79473018 79473191 -38389436 - L1MD2 LINE L1 -1222 4942 4781 1099 198 146 109 chr9 79473291 79473832 -38388795 - L1MD2 LINE L1 -1548 4598 4038 351 365 1 18 chr9 79474913 79475138 -38387489 + L2 LINE L2 3110 3313 0 21 0 0 0 chr9 79475849 79475870 -38386757 + AT_rich Low_complexity Low_complexity 1 21 0 499 293 35 20 chr9 79476218 79476416 -38386211 - L1M4 LINE L1 -2213 3933 3733 752 202 0 0 chr9 79477027 79477151 -38385476 - FLAM_A SINE Alu -9 124 1 1739 105 0 16 chr9 79477188 79477435 -38385192 + AluSq SINE Alu 1 243 -70 21893 40 0 0 chr9 79477623 79481102 -38381525 + L1PA5 LINE L1 2670 6154 0 184 298 191 36 chr9 79481853 79481937 -38380690 + MIR SINE MIR 81 177 -85 500 263 164 6 chr9 79482259 79482430 -38380197 + MIR SINE MIR 57 254 -8 1976 158 49 35 chr9 79482647 79483199 -38379428 - MLT2A2 LTR ERVL 0 554 1 267 207 184 0 chr9 79483688 79483775 -38378852 + MIR SINE MIR 52 154 -108 2493 178 18 22 chr9 79483910 79484417 -38378210 + MLT1D LTR MaLR 1 505 0 24 0 0 0 chr9 79484960 79484984 -38377643 + AT_rich Low_complexity Low_complexity 1 24 0 240 273 0 0 chr9 79484998 79485053 -38377574 - MIR3 SINE MIR -3 205 151 299 279 29 10 chr9 79485855 79485959 -38376668 + (CA)n Simple_repeat Simple_repeat 2 107 0 23 97 0 0 chr9 79486576 79486648 -38375979 + AT_rich Low_complexity Low_complexity 1 72 0 298 296 9 35 chr9 79486649 79486764 -38375863 + GA-rich Low_complexity Low_complexity 1 112 0 300 245 93 0 chr9 79486965 79487104 -38375523 - L1ME4a LINE L1 -248 5873 5722 1695 159 0 89 chr9 79487669 79487995 -38374632 + AluJb SINE Alu 1 297 -15 518 323 32 16 chr9 79488005 79488191 -38374436 + L3 LINE CR1 1388 1576 -1 315 49 0 0 chr9 79488808 79488849 -38373778 + MADE1 DNA Mariner 3 43 -37 2224 105 6 20 chr9 79488870 79489214 -38373413 - L1PA10 LINE L1 0 6168 5830 274 122 0 0 chr9 79489218 79489259 -38373368 + MADE1 DNA Mariner 40 80 0 308 289 154 15 chr9 79489356 79489629 -38372998 + L1ME4a LINE L1 5586 5896 -225 872 255 82 4 chr9 79489698 79489929 -38372698 - MIR SINE MIR 0 262 14 190 175 18 18 chr9 79490009 79490066 -38372561 + (TA)n Simple_repeat Simple_repeat 2 58 0 207 269 50 76 chr9 79490479 79490506 -38372121 - MIR3 SINE MIR -7 201 175 889 198 89 5 chr9 79490506 79490708 -38371919 + MER20 DNA MER1_type 1 219 0 207 269 50 76 chr9 79490708 79490799 -38371828 - MIR3 SINE MIR -33 175 86 505 317 28 52 chr9 79490873 79491122 -38371505 + MIR SINE MIR 14 256 -6 194 296 37 12 chr9 79491483 79491564 -38371063 - MIR SINE MIR 0 262 180 439 92 53 13 chr9 79491575 79491651 -38370976 - L1MA10 LINE L1 -10 6324 6246 1369 119 9 0 chr9 79491651 79491869 -38370758 + L1MB1 LINE L1 5873 6092 -76 1860 193 39 34 chr9 79491903 79492343 -38370284 + MLT1D LTR MaLR 2 443 -62 186 229 0 0 chr9 79492610 79492645 -38369982 - L2 LINE L2 -1 3271 3237 271 240 48 19 chr9 79492951 79493055 -38369572 + LTR67 LTR ERVL 428 534 -23 1213 183 13 15 chr9 79493105 79493442 -38369185 - MER52C LTR ERV1 -850 428 76 * 3290 154 51 57 chr9 79493382 79494391 -38368236 + MER52C LTR ERV1 395 1278 0 311 319 212 0 chr9 79494773 79495065 -38367562 + L2 LINE L2 2278 2631 -683 357 299 85 25 chr9 79495076 79495277 -38367350 - MLT1K LTR MaLR -8 580 368 501 343 27 43 chr9 79495660 79496031 -38366596 + L2 LINE L2 2646 3006 -266 302 357 9 36 chr9 79496082 79496194 -38366433 + L2 LINE L2 3122 3230 -42 385 226 153 8 chr9 79497060 79497184 -38365443 - L1ME4a LINE L1 -6 6115 5974 4189 31 52 0 chr9 79498139 79498659 -38363968 + L1PA4 LINE L1 5609 6155 0 25 0 0 0 chr9 79499142 79499167 -38363460 + AT_rich Low_complexity Low_complexity 1 25 0 806 346 83 19 chr9 79500230 79500675 -38361952 + L1ME1 LINE L1 5385 5870 -296 2145 329 108 29 chr9 79500675 79502267 -38360360 + L2 LINE L2 1072 2789 -525 320 263 193 9 chr9 79502322 79502436 -38360191 - L2 LINE L2 -2 3311 3177 351 336 114 13 chr9 79502526 79502675 -38359952 + L2 LINE L2 3103 3266 -6 255 31 0 0 chr9 79502707 79502739 -38359888 + (TTTA)n Simple_repeat Simple_repeat 4 35 0 29162 107 8 14 chr9 79502741 79505261 -38357366 - L1PA7 LINE L1 -20 6449 3915 2406 103 0 0 chr9 79505261 79505572 -38357055 - AluY SINE Alu 0 311 1 29162 107 8 14 chr9 79505572 79509338 -38353289 - L1PA7 LINE L1 -2554 3915 5 27 87 0 0 chr9 79509389 79509458 -38353169 + AT_rich Low_complexity Low_complexity 1 69 0 21 0 0 0 chr9 79510483 79510504 -38352123 + AT_rich Low_complexity Low_complexity 1 21 0 196 296 133 10 chr9 79510589 79510687 -38351940 + MIR SINE MIR 5 114 -148 201 121 0 0 chr9 79510819 79510852 -38351775 + (CAA)n Simple_repeat Simple_repeat 3 35 0 327 248 8 72 chr9 79510917 79511042 -38351585 - L1MC4 LINE L1 -1318 6724 6608 234 119 51 17 chr9 79511042 79511104 -38351523 + (TTATA)n Simple_repeat Simple_repeat 1 64 0 331 355 22 11 chr9 79511388 79511571 -38351056 + HAL1b LINE L1 384 568 -780 1558 191 40 79 chr9 79511572 79512053 -38350574 - MER101 LTR ERV1 0 474 13 244 0 0 0 chr9 79512250 79512279 -38350348 - L1P4 LINE L1 -359 5815 5787 1581 55 5 0 chr9 79512280 79512561 -38350066 + L1PA5 LINE L1 5952 6233 0 388 276 6 69 chr9 79512802 79512976 -38349651 + MLT1K LTR MaLR 426 588 0 192 77 0 0 chr9 79513037 79513063 -38349564 + (CA)n Simple_repeat Simple_repeat 1 26 0 203 355 32 20 chr9 79513791 79513913 -38348714 + MIR3 SINE MIR 89 184 -24 872 235 25 0 chr9 79514210 79514406 -38348221 + MER3 DNA MER1_type 8 208 -1 262 216 0 0 chr9 79514364 79514415 -38348212 - MER3 DNA MER1_type -119 90 40 * 43 0 0 0 chr9 79514544 79514587 -38348040 + AT_rich Low_complexity Low_complexity 1 43 0 189 171 0 0 chr9 79514702 79514737 -38347890 + A-rich Low_complexity Low_complexity 1 35 0 24 67 0 0 chr9 79514797 79514842 -38347785 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr9 79514872 79514893 -38347734 + AT_rich Low_complexity Low_complexity 1 21 0 20092 51 14 2 chr9 79515269 79518619 -38344008 - L1PA5 LINE L1 -3 6151 2770 566 213 175 0 chr9 79519412 79519595 -38343032 - L1ME1 LINE L1 -21 6145 5931 4326 222 58 51 chr9 79519600 79521654 -38340973 - L1MD1 LINE L1 -375 5867 3791 404 284 33 55 chr9 79521722 79521905 -38340722 - L2 LINE L2 -9 3304 3126 259 259 58 72 chr9 79523781 79523920 -38338707 + MIR SINE MIR 120 256 -6 1801 229 52 61 chr9 79525102 79525661 -38336966 - MLT2B3 LTR ERVL 0 554 1 442 336 33 54 chr9 79526052 79526293 -38336334 + LTR16A1 LTR ERVL 196 431 -26 2525 152 31 17 chr9 79526386 79526866 -38335761 + L1MB3 LINE L1 5687 6173 -10 2119 182 11 25 chr9 79527237 79527501 -38335126 + L1PA16 LINE L1 4623 4878 -1268 1998 162 3 0 chr9 79527501 79527810 -38334817 + AluSx SINE Alu 1 310 -2 2119 182 11 25 chr9 79527810 79528017 -38334610 + L1PA16 LINE L1 4878 5087 -1059 * 5495 133 3 11 chr9 79528010 79528880 -38333747 + L1PA16 LINE L1 5295 6157 -9 1730 181 30 30 chr9 79528906 79529271 -38333356 + MLT1A1 LTR MaLR 1 365 0 511 366 34 11 chr9 79530148 79530503 -38332124 + L2 LINE L2 2350 2712 -602 231 283 65 0 chr9 79530551 79530643 -38331984 - LTR33 LTR ERVL -8 513 416 486 320 120 17 chr9 79530768 79531068 -38331559 - LTR33 LTR ERVL -144 377 47 * 1582 194 51 15 chr9 79531026 79531362 -38331265 + MLT1D LTR MaLR 158 505 0 194 300 0 0 chr9 79531362 79531412 -38331215 - L3 LINE CR1 -26 1551 1502 229 336 129 18 chr9 79531418 79531635 -38330992 - L2 LINE L2 -508 2806 2566 23 68 0 0 chr9 79531850 79531894 -38330733 + AT_rich Low_complexity Low_complexity 1 44 0 415 294 91 40 chr9 79532261 79532537 -38330090 - LTR16A1 LTR ERVL 0 457 168 371 311 156 46 chr9 79532802 79533040 -38329587 + L2 LINE L2 1843 2106 -1208 569 226 21 8 chr9 79533092 79533331 -38329296 - L1MC4 LINE L1 0 8042 7716 705 296 141 63 chr9 79533331 79534374 -38328253 + L2 LINE L2 2188 3312 -1 2286 118 0 0 chr9 79534475 79534772 -38327855 + AluSx SINE Alu 3 299 -13 320 227 142 14 chr9 79535412 79535553 -38327074 - L1ME4a LINE L1 -18 6103 5945 689 309 153 20 chr9 79535558 79535949 -38326678 - L2 LINE L2 0 3313 2871 207 404 19 10 chr9 79536437 79536541 -38326086 - L2 LINE L2 -667 2647 2543 803 173 29 35 chr9 79537425 79537598 -38325029 + L1MB4 LINE L1 6003 6174 -6 273 25 0 25 chr9 79537798 79537838 -38324789 - L1PA15 LINE L1 -12 6153 6115 * 4705 116 39 6 chr9 79537835 79538805 -38323822 - L1PA14 LINE L1 -133 6028 5031 508 322 128 35 chr9 79539673 79540294 -38322333 - L2 LINE L2 0 3272 2587 25 90 0 0 chr9 79540375 79540442 -38322185 + AT_rich Low_complexity Low_complexity 1 67 0 319 311 19 0 chr9 79540448 79540551 -38322076 - Charlie7 DNA MER1_type -2507 105 1 1902 225 50 59 chr9 79540835 79541394 -38321233 + MLT2B3 LTR ERVL 1 554 0 1338 77 21 10 chr9 79541641 79541835 -38320792 + L1PB1 LINE L1 5956 6151 0 2179 127 0 6 chr9 79542328 79542642 -38319985 - AluSx SINE Alu 0 312 1 23 0 0 0 chr9 79542911 79542934 -38319693 + AT_rich Low_complexity Low_complexity 1 23 0 3312 68 0 33 chr9 79543872 79544330 -38318297 - MLT2A1 LTR ERVL -1 443 1 1359 292 69 18 chr9 79546447 79547277 -38315350 - L1ME4a LINE L1 -215 5955 5084 342 198 23 47 chr9 79547386 79547472 -38315155 + MER5A DNA MER1_type 1 84 -105 193 333 111 0 chr9 79547481 79547562 -38315065 - L2 LINE L2 -9 3304 3215 5659 29 1 0 chr9 79547578 79548244 -38314383 + L1PA4 LINE L1 5485 6151 -4 1467 165 112 0 chr9 79548302 79548569 -38314058 + AluSx SINE Alu 3 299 -13 249 182 76 15 chr9 79549218 79549284 -38313343 + MLT2E LTR ERVL 35 104 -524 302 219 96 0 chr9 79549526 79549599 -38313028 + LTR33A LTR ERVL 444 523 0 1636 179 148 33 chr9 79550016 79550435 -38312192 - MLT1C LTR MaLR 0 467 1 204 321 79 50 chr9 79550620 79550760 -38311867 + MIR3 SINE MIR 3 146 -62 2473 193 98 36 chr9 79550796 79551553 -38311074 - LTR1B LTR ERV1 0 785 1 2145 90 30 17 chr9 79551725 79552026 -38310601 + AluSx SINE Alu 1 305 -7 394 249 104 25 chr9 79552417 79552618 -38310009 - L1ME4a LINE L1 -227 5894 5678 225 285 41 32 chr9 79553068 79553191 -38309436 - L1ME4a LINE L1 -1019 5127 5004 31 26 0 0 chr9 79553210 79553248 -38309379 + AT_rich Low_complexity Low_complexity 1 38 0 215 232 36 0 chr9 79553644 79553700 -38308927 + L2 LINE L2 3256 3313 0 222 118 0 0 chr9 79554780 79554814 -38307813 + (CGTG)n Simple_repeat Simple_repeat 2 35 0 12721 60 76 5 chr9 79554994 79556721 -38305906 - L1P LINE L1 -4295 1851 1 2298 191 51 23 chr9 79556787 79557273 -38305354 + MLT1D LTR MaLR 1 500 -5 255 215 123 0 chr9 79557918 79557983 -38304644 + Tigger4(Zombi) DNA MER2_type 6 78 -2653 2171 64 0 35 chr9 79557990 79558273 -38304354 - AluSc SINE Alu -36 273 1 366 311 42 8 chr9 79558436 79558555 -38304072 - MLT1K LTR MaLR -389 199 77 204 125 0 0 chr9 79558611 79558643 -38303984 + (TG)n Simple_repeat Simple_repeat 2 33 0 181 337 31 61 chr9 79560183 79560281 -38302346 - L3 LINE CR1 -961 616 522 434 313 102 27 chr9 79560696 79560952 -38301675 - L3 LINE CR1 -1019 558 284 189 0 0 0 chr9 79561521 79561542 -38301085 + (A)n Simple_repeat Simple_repeat 1 21 0 30 0 0 0 chr9 79561568 79561598 -38301029 + AT_rich Low_complexity Low_complexity 1 30 0 2306 94 0 10 chr9 79561767 79562075 -38300552 - AluSx SINE Alu -4 308 4 21 0 0 0 chr9 79562276 79562297 -38300330 + AT_rich Low_complexity Low_complexity 1 21 0 968 277 73 28 chr9 79562467 79562862 -38299765 + LTR16A LTR ERVL 23 457 0 910 328 58 10 chr9 79563109 79563505 -38299122 + HERV16 LTR ERVL 297 711 -4285 184 229 0 0 chr9 79563805 79563840 -38298787 + MIR SINE MIR 154 188 -74 30 0 0 0 chr9 79563966 79563996 -38298631 + AT_rich Low_complexity Low_complexity 1 30 0 982 188 45 31 chr9 79564001 79564225 -38298402 - AluJo SINE Alu -9 303 77 391 127 0 0 chr9 79565139 79565194 -38297433 - MER20 DNA MER1_type -1 218 164 187 315 164 41 chr9 79565344 79565490 -38297137 + MIR3 SINE MIR 18 181 -27 283 341 12 0 chr9 79565499 79565581 -38297046 + L2 LINE L2 3190 3272 0 253 356 0 0 chr9 79565630 79565720 -38296907 + L2 LINE L2 3178 3267 -5 327 330 63 15 chr9 79566068 79566250 -38296377 + MIR SINE MIR 18 202 -60 26 30 0 0 chr9 79566369 79566402 -38296225 + AT_rich Low_complexity Low_complexity 1 33 0 725 265 111 8 chr9 79566662 79566896 -38295731 + MIR SINE MIR 2 259 -3 210 333 13 0 chr9 79567478 79567553 -38295074 + L2 LINE L2 2680 2755 -559 437 188 0 0 chr9 79567584 79567664 -38294963 - AluJ/FRAM SINE Alu -16 296 217 402 57 0 0 chr9 79567742 79567795 -38294832 + (TC)n Simple_repeat Simple_repeat 2 54 0 203 0 0 36 chr9 79568000 79568028 -38294599 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 414 349 94 32 chr9 79568162 79568566 -38294061 - L2 LINE L2 -733 2581 2153 867 281 122 45 chr9 79569011 79569453 -38293174 + L2 LINE L2 2833 3308 -5 1097 313 29 11 chr9 79570373 79570817 -38291810 - L1MCc LINE L1 -5948 475 24 651 332 124 10 chr9 79570934 79571320 -38291307 - L1MEd LINE L1 -5279 840 411 2228 89 3 0 chr9 79571639 79571941 -38290686 - L1PA10 LINE L1 -5 6163 5861 5070 139 13 48 chr9 79571998 79572174 -38290453 - L1MA8 LINE L1 0 6291 6110 1679 206 0 16 chr9 79572174 79572480 -38290147 - AluJo SINE Alu -11 301 1 5070 139 13 48 chr9 79572480 79573272 -38289355 - L1MA8 LINE L1 -181 6110 5357 14828 92 16 11 chr9 79573273 79575345 -38287282 + MER57A-int LTR ERV1 5063 7144 -393 747 121 35 0 chr9 79575345 79575461 -38287166 + LTR54B LTR ERV1 1 120 -378 1820 92 18 15 chr9 79575461 79575734 -38286893 + MER57A-int LTR ERV1 7264 7537 0 2231 144 55 0 chr9 79575734 79576116 -38286511 + MER57A LTR ERV1 1 403 0 776 193 25 19 chr9 79576330 79576491 -38286136 - MER105 DNA DNA -42 162 1 243 361 18 41 chr9 79577136 79577305 -38285322 + L2 LINE L2 2688 2852 -462 268 316 41 10 chr9 79577354 79577452 -38285175 + L2 LINE L2 2932 3032 -240 633 208 40 40 chr9 79577480 79577653 -38284974 - MER5B DNA MER1_type -1 177 5 642 248 176 0 chr9 79577663 79577873 -38284754 + MIR SINE MIR 15 261 -1 205 338 0 0 chr9 79578100 79578171 -38284456 + L2 LINE L2 2587 2657 -657 193 230 138 58 chr9 79578284 79578371 -38284256 + L2 LINE L2 3154 3247 -25 205 390 80 0 chr9 79580186 79580286 -38282341 - MIR SINE MIR -63 145 38 402 336 25 49 chr9 79580621 79580842 -38281785 + MIR SINE MIR 3 216 -46 296 295 98 25 chr9 79582163 79582285 -38280342 + L2 LINE L2 3183 3313 0 512 267 134 17 chr9 79583395 79583567 -38279060 - MIR SINE MIR -7 255 64 532 254 85 6 chr9 79584967 79585132 -38277495 + MIR SINE MIR 82 259 -3 256 235 183 35 chr9 79585144 79585259 -38277368 - MIR SINE MIR -125 137 6 197 293 50 50 chr9 79585852 79585951 -38276676 - MIR SINE MIR -1 261 163 * 261 331 7 65 chr9 79585918 79586072 -38276555 - L2 LINE L2 0 3313 3169 302 305 63 0 chr9 79586112 79586207 -38276420 - MIR SINE MIR -114 148 48 2086 120 13 0 chr9 79586647 79586947 -38275680 + AluSx SINE Alu 1 304 -8 2458 103 0 0 chr9 79586961 79587272 -38275355 + AluSx SINE Alu 1 311 -1 510 287 48 72 chr9 79587378 79587709 -38274918 + L2 LINE L2 2991 3313 0 303 265 70 31 chr9 79587757 79587921 -38274706 - L1ME3A LINE L1 -279 5887 5721 24 39 0 0 chr9 79588194 79588220 -38274407 + GC_rich Low_complexity Low_complexity 1 26 0 537 101 0 0 chr9 79588325 79588394 -38274233 - Alu SINE Alu -232 77 9 302 317 193 15 chr9 79589099 79589301 -38273326 + MIR SINE MIR 11 248 -14 377 185 12 12 chr9 79589890 79589971 -38272656 + MIR SINE MIR 100 180 -82 8440 40 4 0 chr9 79590732 79592440 -38270187 - L1PA5 LINE L1 -151 6003 4289 4844 15 3 0 chr9 79592440 79593028 -38269599 + L1PA3 LINE L1 5304 5893 -262 420 243 78 0 chr9 79593178 79593281 -38269346 + MER63A DNA MER1_type 100 210 0 26 0 0 0 chr9 79593298 79593324 -38269303 + AT_rich Low_complexity Low_complexity 1 26 0 554 150 62 0 chr9 79593416 79593529 -38269098 - L1MA4 LINE L1 -5 6295 6176 182 191 21 0 chr9 79593588 79593635 -38268992 + (TA)n Simple_repeat Simple_repeat 1 48 0 548 254 0 0 chr9 79594402 79594524 -38268103 - MER45A DNA AcHobo 0 178 57 2385 93 0 13 chr9 79594527 79594881 -38267746 - AluSc SINE Alu 0 350 1 330 242 0 0 chr9 79594888 79594950 -38267677 - MER45A DNA AcHobo -116 62 1 287 335 81 81 chr9 79595939 79596360 -38266267 + L2 LINE L2 2830 3250 -22 413 176 14 0 chr9 79596372 79596446 -38266181 + LTR32 LTR ERVL 15 89 -382 276 105 228 0 chr9 79596429 79596486 -38266141 + LTR32 LTR ERVL 19 88 -383 * 983 228 31 0 chr9 79596501 79596725 -38265902 + LTR32 LTR ERVL 232 462 -9 4004 271 25 25 chr9 79596733 79597979 -38264648 + HERVL32 LTR ERVL 1 1246 -2172 585 160 61 23 chr9 79598602 79598733 -38263894 + LTR32 LTR ERVL 331 466 -5 1733 188 67 21 chr9 79598846 79599381 -38263246 + MLT2A2 LTR ERVL 1 554 0 258 231 128 43 chr9 79600300 79600417 -38262210 - MIR SINE MIR -1 261 135 248 372 21 0 chr9 79600469 79600563 -38262064 - MIR SINE MIR -63 145 50 312 282 115 40 chr9 79600587 79600788 -38261839 - MIR SINE MIR 0 262 41 408 329 47 39 chr9 79601091 79601346 -38261281 + L2 LINE L2 2826 3082 -231 819 191 60 30 chr9 79601465 79601664 -38260963 + L2 LINE L2 3107 3311 -2 633 224 53 12 chr9 79601993 79602163 -38260464 - MER97c DNA MER1_type? -911 179 3 1103 249 114 48 chr9 79602396 79602934 -38259693 - MLT1F1 LTR MaLR -7 586 1 257 290 65 27 chr9 79603192 79603378 -38259249 - HAL1b LINE L1 -731 617 425 666 298 149 0 chr9 79603522 79603824 -38258803 + LTR16C LTR ERVL 135 481 -10 1571 163 3 62 chr9 79603956 79604090 -38258537 - L1PA13 LINE L1 -1 6162 6022 2064 113 0 53 chr9 79604090 79604410 -38258217 - AluSx SINE Alu -9 303 1 1571 163 3 62 chr9 79604410 79604632 -38257995 - L1PA13 LINE L1 -141 6022 5827 10812 98 10 6 chr9 79605010 79606138 -38256489 + L1P LINE L1 2490 3629 -2517 2406 103 0 0 chr9 79606138 79606449 -38256178 + AluY SINE Alu 1 311 0 10812 98 10 6 chr9 79606449 79607005 -38255622 + L1P LINE L1 3629 4181 -1965 2105 115 65 14 chr9 79607293 79607649 -38254978 + THE1C LTR MaLR 2 375 0 3055 102 86 0 chr9 79607649 79608139 -38254488 + THE1C-int LTR MaLR 1 532 -1048 21932 41 0 0 chr9 79608315 79611799 -38250828 + L1PA5 LINE L1 2670 6152 -2 675 217 198 0 chr9 79611955 79612112 -38250515 - MLT2B3 LTR ERVL -366 188 1 21 36 0 0 chr9 79612775 79612803 -38249824 + AT_rich Low_complexity Low_complexity 1 28 0 1676 127 0 12 chr9 79613471 79613716 -38248911 + AluY SINE Alu 39 280 -31 26 0 0 0 chr9 79613727 79613753 -38248874 + AT_rich Low_complexity Low_complexity 1 26 0 664 221 49 6 chr9 79613893 79614056 -38248571 - MER63A DNA MER1_type -35 175 6 256 202 192 20 chr9 79615058 79615157 -38247470 - MER5A DNA MER1_type -1 188 73 197 267 0 0 chr9 79615553 79615598 -38247029 + L2 LINE L2 3265 3309 -4 465 302 44 6 chr9 79616449 79616631 -38245996 - MIR SINE MIR -43 219 31 940 204 89 0 chr9 79616631 79616822 -38245805 - MER3 DNA MER1_type 0 209 2 211 211 0 0 chr9 79616933 79616971 -38245656 + GA-rich Low_complexity Low_complexity 2 39 0 321 218 164 36 chr9 79617515 79617625 -38245002 - MIR SINE MIR -74 188 65 1374 139 5 0 chr9 79617636 79617859 -38244768 - L1PA16 LINE L1 -153 6013 5790 1939 176 0 16 chr9 79617901 79618213 -38244414 - AluJo SINE Alu -5 307 1 4645 165 54 48 chr9 79618361 79619822 -38242805 - L1PA16 LINE L1 -5 7599 6133 3716 26 0 0 chr9 79619822 79620252 -38242375 - L1PA3 LINE L1 -3 6152 5723 4645 165 54 48 chr9 79620252 79620773 -38241854 - L1PA16 LINE L1 -1471 6133 5616 1001 96 7 0 chr9 79620777 79620912 -38241715 - AluSq SINE Alu -88 225 90 3667 171 62 19 chr9 79620912 79621222 -38241405 - L1PA16 LINE L1 -4272 3312 3017 2086 151 122 10 chr9 79621222 79621607 -38241020 + MSTA LTR MaLR 1 428 0 3667 171 62 19 chr9 79621607 79622108 -38240519 - L1PA16 LINE L1 -4567 3017 2466 750 287 19 8 chr9 79622117 79622385 -38240242 - L1PA16 LINE L1 -5257 2327 2057 310 273 32 96 chr9 79622406 79622626 -38240001 - L1PA16 LINE L1 -5641 1944 1739 427 338 47 20 chr9 79623153 79623301 -38239326 - L1M2 LINE L1 -6018 831 680 868 288 45 20 chr9 79623647 79624043 -38238584 - L1PA16 LINE L1 -7166 415 10 29 60 0 0 chr9 79625543 79625593 -38237034 + AT_rich Low_complexity Low_complexity 1 50 0 10822 168 52 8 chr9 79626798 79630116 -38232511 - L1MA8 LINE L1 -2 6289 2823 875 117 6 86 chr9 79630892 79631054 -38231573 + Tigger1 DNA MER2_type 3 151 -2267 * 972 175 57 28 chr9 79631050 79631261 -38231366 + Tigger1 DNA MER2_type 2202 2418 0 221 184 0 0 chr9 79631263 79631301 -38231326 - L2 LINE L2 -22 3291 3254 1765 188 3 7 chr9 79631542 79631850 -38230777 - AluJo SINE Alu -3 309 3 449 232 0 0 chr9 79632124 79632206 -38230421 - Tigger5 DNA MER2_type 0 2323 2242 281 176 147 15 chr9 79632196 79632264 -38230363 + Tigger5 DNA MER2_type 2242 2318 -5 * 440 200 0 0 chr9 79632264 79632344 -38230283 - Tigger5 DNA MER2_type -2243 80 1 298 246 122 26 chr9 79633830 79633974 -38228653 - MIR SINE MIR -62 146 51 29 60 0 0 chr9 79634035 79634085 -38228542 + AT_rich Low_complexity Low_complexity 1 50 0 2106 143 29 0 chr9 79636058 79636409 -38226218 - L1PB4 LINE L1 -2 6154 5794 423 0 0 0 chr9 79636409 79636456 -38226171 + (TG)n Simple_repeat Simple_repeat 2 48 0 6495 147 26 39 chr9 79636646 79636745 -38225882 - L1PB4 LINE L1 -264 5892 5793 333 0 0 0 chr9 79636745 79636782 -38225845 + (TG)n Simple_repeat Simple_repeat 2 38 0 6495 147 26 39 chr9 79636782 79638615 -38224012 - L1PB4 LINE L1 -363 5793 3984 25 51 0 0 chr9 79638813 79638852 -38223775 + AT_rich Low_complexity Low_complexity 1 39 0 2081 47 0 0 chr9 79639542 79639796 -38222831 + L1PA4 LINE L1 5891 6144 -11 351 0 0 0 chr9 79639796 79639835 -38222792 + (CA)n Simple_repeat Simple_repeat 2 40 0 470 92 0 0 chr9 79639836 79639901 -38222726 + L1P4 LINE L1 5536 5600 -566 206 31 0 31 chr9 79639903 79639935 -38222692 + (TAAAA)n Simple_repeat Simple_repeat 2 32 0 276 408 62 0 chr9 79640048 79640178 -38222449 - L2 LINE L2 -22 3250 3113 2490 110 6 8 chr9 79640208 79640573 -38222054 - THE1B LTR MaLR 0 364 1 836 210 95 5 chr9 79641442 79641642 -38220985 - MER20 DNA MER1_type -1 218 1 2079 106 7 7 chr9 79642164 79642457 -38220170 + AluSp SINE Alu 1 293 -20 277 326 35 43 chr9 79642897 79643038 -38219589 - MIR3 SINE MIR -10 198 59 21 36 0 0 chr9 79644404 79644432 -38218195 + AT_rich Low_complexity Low_complexity 1 28 0 332 287 21 0 chr9 79644710 79644804 -38217823 + L2 LINE L2 3218 3313 0 237 245 10 128 chr9 79646208 79646310 -38216317 + L2 LINE L2 3183 3272 0 255 308 49 49 chr9 79646928 79647071 -38215556 - MER5A DNA MER1_type -45 144 2 508 325 111 26 chr9 79647487 79647721 -38214906 + MIR SINE MIR 9 262 0 1718 127 6 96 chr9 79647815 79648138 -38214489 + AluSx SINE Alu 2 295 -17 4288 61 4 16 chr9 79648138 79648746 -38213881 - L1PA7 LINE L1 -340 5814 5215 2479 68 31 0 chr9 79648746 79649067 -38213560 + L1PA7 LINE L1 5817 6148 -6 201 175 19 68 chr9 79649075 79649178 -38213449 + A-rich Low_complexity Low_complexity 1 98 0 437 241 66 44 chr9 79649192 79649329 -38213298 + MIR SINE MIR 22 161 -101 180 0 0 0 chr9 79649824 79649844 -38212783 + (A)n Simple_repeat Simple_repeat 1 20 0 1656 108 0 0 chr9 79649844 79650066 -38212561 + AluSg SINE Alu 1 222 -88 21 36 0 0 chr9 79651462 79651490 -38211137 + AT_rich Low_complexity Low_complexity 1 28 0 1592 138 126 6 chr9 79651701 79652042 -38210585 - L1MA8 LINE L1 -1 6290 5909 2606 69 3 14 chr9 79652486 79652846 -38209781 - L1PA7 LINE L1 0 6154 5799 788 297 91 12 chr9 79653222 79653928 -38208699 + L1ME3 LINE L1 5087 5856 -306 195 42 0 0 chr9 79654603 79654627 -38208000 + (TC)n Simple_repeat Simple_repeat 2 25 0 207 0 0 0 chr9 79654629 79654652 -38207975 + (GA)n Simple_repeat Simple_repeat 2 24 0 338 94 16 0 chr9 79654656 79654720 -38207907 + (TA)n Simple_repeat Simple_repeat 1 65 0 361 183 0 0 chr9 79654797 79654857 -38207770 + MER6B DNA MER2_type 150 209 -1 265 106 61 0 chr9 79654950 79655016 -38207611 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 245 246 0 16 chr9 79655137 79655198 -38207429 - MER6B DNA MER2_type -1 209 150 1142 176 10 5 chr9 79655827 79656032 -38206595 + MER6B DNA MER2_type 1 206 -4 349 82 311 0 chr9 79656069 79656130 -38206497 - MADE1 DNA Mariner 0 80 1 24 67 0 0 chr9 79656135 79656180 -38206447 + AT_rich Low_complexity Low_complexity 1 45 0 266 258 93 0 chr9 79656533 79656630 -38205997 + L1 LINE L1 3608 3713 -2433 2441 31 0 10 chr9 79658823 79659111 -38203516 + AluY SINE Alu 27 311 0 257 258 0 0 chr9 79659331 79659397 -38203230 - MIR SINE MIR 0 262 197 33 43 0 0 chr9 79660390 79660437 -38202190 + AT_rich Low_complexity Low_complexity 1 47 0 4365 133 8 18 chr9 79660488 79661196 -38201431 - L1PA16 LINE L1 -9 6157 5457 4915 193 25 10 chr9 79662454 79663659 -38198968 - L1PA16 LINE L1 -694 5472 4254 472 339 38 1 chr9 79663693 79663887 -38198740 - MIR SINE MIR -58 204 5 288 338 0 0 chr9 79664247 79664315 -38198312 - L2 LINE L2 -18 3295 3228 * 300 242 37 152 chr9 79664313 79664610 -38198017 + L2 LINE L2 2631 2893 -421 186 279 162 0 chr9 79664850 79664918 -38197709 + L2 LINE L2 3185 3263 -9 510 154 95 29 chr9 79664927 79665069 -38197558 - MSTC LTR MaLR -3 425 199 242 156 89 0 chr9 79665203 79665248 -38197379 - MSTC LTR MaLR -378 50 2 217 312 75 0 chr9 79665295 79665388 -38197239 + L2 LINE L2 3214 3313 0 230 239 0 0 chr9 79665418 79665464 -38197163 + (CA)n Simple_repeat Simple_repeat 2 47 0 1873 116 150 44 chr9 79665471 79665939 -38196688 - pTR5 LTR ERV1 -394 2044 1 26 93 0 0 chr9 79667545 79667620 -38195007 + AT_rich Low_complexity Low_complexity 1 75 0 25 0 0 0 chr9 79667807 79667832 -38194795 + AT_rich Low_complexity Low_complexity 1 25 0 2195 108 47 36 chr9 79667858 79668218 -38194409 + THE1B LTR MaLR 1 364 0 15999 24 0 0 chr9 79668794 79670697 -38191930 - L1HS LINE L1 -1908 4238 2336 9695 15 0 0 chr9 79670696 79672601 -38190026 + L1HS LINE L1 4251 6155 0 * 633 269 32 51 chr9 79672794 79673010 -38189617 - MIR SINE MIR -22 240 29 536 272 67 22 chr9 79673124 79673304 -38189323 + MIR SINE MIR 32 219 -43 403 248 9 80 chr9 79675845 79675958 -38186669 - MIR SINE MIR -75 187 83 788 213 98 0 chr9 79676543 79676667 -38185960 + MER58A DNA MER1_type 45 190 -2230 198 0 0 0 chr9 79676667 79676689 -38185938 + (CAAAA)n Simple_repeat Simple_repeat 1 22 0 788 213 98 0 chr9 79676689 79676728 -38185899 + MER58A DNA MER1_type 190 224 0 439 293 66 12 chr9 79676754 79676921 -38185706 + MER117 DNA MER1_type 19 194 -3 255 61 0 0 chr9 79678751 79678784 -38183843 + (TA)n Simple_repeat Simple_repeat 2 34 0 30 89 0 0 chr9 79679060 79679139 -38183488 + AT_rich Low_complexity Low_complexity 1 79 0 23 0 0 0 chr9 79679495 79679518 -38183109 + AT_rich Low_complexity Low_complexity 1 23 0 269 282 73 63 chr9 79679716 79680032 -38182595 + L1ME4a LINE L1 5799 6117 -4 437 328 71 81 chr9 79680046 79680373 -38182254 + L1ME4a LINE L1 3428 3746 -2400 2057 133 0 7 chr9 79680373 79680673 -38181954 + AluSx SINE Alu 12 309 -3 437 328 71 81 chr9 79680673 79681010 -38181617 + L1ME4a LINE L1 3746 4085 -2061 380 298 42 83 chr9 79681013 79681325 -38181302 - L2 LINE L2 -18 3295 2997 597 347 74 28 chr9 79681356 79681886 -38180741 + L1ME4a LINE L1 4108 4661 -1485 35 54 0 0 chr9 79682011 79682067 -38180560 + AT_rich Low_complexity Low_complexity 1 56 0 22 35 0 0 chr9 79682123 79682152 -38180475 + AT_rich Low_complexity Low_complexity 1 29 0 5542 122 46 7 chr9 79682265 79683218 -38179409 + L1PA15 LINE L1 5177 6164 -1 600 291 107 48 chr9 79683397 79684058 -38178569 + L1ME4a LINE L1 5382 6081 -40 326 364 29 12 chr9 79685243 79685416 -38177211 - MIR SINE MIR -53 209 34 2304 102 10 0 chr9 79686620 79686923 -38175704 + AluSg SINE Alu 1 306 -4 293 301 44 26 chr9 79687074 79687187 -38175440 + L1ME LINE L1 12 126 -5944 660 163 177 14 chr9 79687485 79687626 -38175001 - MER58A DNA MER1_type -16 208 45 1506 199 79 87 chr9 79687794 79688287 -38174340 + MLT1D LTR MaLR 1 489 -16 24 0 0 0 chr9 79688608 79688632 -38173995 + AT_rich Low_complexity Low_complexity 1 24 0 2078 168 21 76 chr9 79688789 79689238 -38173389 - MSTB LTR MaLR 0 417 3 189 0 0 0 chr9 79690017 79690038 -38172589 + (T)n Simple_repeat Simple_repeat 1 21 0 184 278 111 0 chr9 79690231 79690303 -38172324 - L2 LINE L2 -1060 2254 2175 375 73 0 0 chr9 79690782 79690837 -38171790 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 247 307 59 20 chr9 79691156 79691257 -38171370 - MIR SINE MIR -56 206 102 442 249 16 110 chr9 79691558 79691803 -38170824 + MLT1D LTR MaLR 1 222 -283 418 266 98 11 chr9 79691961 79692145 -38170482 + HAL1 LINE L1 1406 1605 -902 22 35 0 0 chr9 79692310 79692339 -38170288 + AT_rich Low_complexity Low_complexity 1 29 0 6386 91 8 1 chr9 79692724 79693796 -38168831 + L1PA12 LINE L1 5059 6151 -17 596 292 71 12 chr9 79693959 79694380 -38168247 + L1ME4a LINE L1 3617 4062 -2084 318 251 50 45 chr9 79694373 79694572 -38168055 + L1ME4a LINE L1 4392 4591 -1555 * 305 234 89 16 chr9 79694768 79694892 -38167735 + L1ME4a LINE L1 5265 5397 -749 491 270 147 21 chr9 79694932 79695239 -38167388 + L1ME4a LINE L1 5512 5856 -296 2710 117 3 8 chr9 79695947 79696331 -38166296 + MLT1B LTR MaLR 1 382 -8 983 282 116 20 chr9 79696356 79697376 -38165251 + L1MEd LINE L1 561 1730 -4580 1980 163 99 29 chr9 79697416 79697883 -38164744 + L1MA8 LINE L1 5780 6287 -4 540 271 73 28 chr9 79697942 79698337 -38164290 + L1MEd LINE L1 3030 3442 -2687 29 28 0 0 chr9 79699354 79699390 -38163237 + AT_rich Low_complexity Low_complexity 1 36 0 275 336 38 0 chr9 79700552 79700683 -38161944 - MIR SINE MIR 0 262 127 310 295 48 72 chr9 79701074 79701281 -38161346 + Charlie8 DNA MER1_type 1 202 -2215 214 255 0 0 chr9 79701949 79701996 -38160631 - L2 LINE L2 -8 3305 3259 402 299 60 54 chr9 79702025 79702209 -38160418 - MIR SINE MIR -44 218 34 201 306 0 0 chr9 79703052 79703101 -38159526 - L2 LINE L2 0 3313 3265 1037 202 66 101 chr9 79703156 79703533 -38159094 - MLT1A1 LTR MaLR 0 365 2 223 336 164 0 chr9 79703643 79703863 -38158764 - L2 LINE L2 -213 3059 2804 320 214 71 18 chr9 79704678 79704790 -38157837 - MLT1K LTR MaLR -25 563 446 237 297 93 59 chr9 79706109 79706227 -38156400 - MIR SINE MIR -62 146 25 3104 163 87 30 chr9 79706327 79706920 -38155707 - L1MB1 LINE L1 -5 6163 5605 216 0 0 0 chr9 79706920 79706944 -38155683 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3104 163 87 30 chr9 79706944 79707832 -38154795 - L1MB1 LINE L1 -563 5605 4571 879 183 111 48 chr9 79708441 79708649 -38153978 + MER58A DNA MER1_type 4 224 0 2000 156 13 0 chr9 79708678 79708986 -38153641 + AluSx SINE Alu 1 312 0 250 132 0 171 chr9 79709552 79709628 -38152999 - LTR33 LTR ERVL 0 521 459 419 200 28 65 chr9 79709631 79709749 -38152878 + MLT1F LTR MaLR 86 207 -356 232 325 114 24 chr9 79710464 79710587 -38152040 - L2 LINE L2 0 3272 3139 246 151 97 11 chr9 79711206 79711299 -38151328 + (TATAA)n Simple_repeat Simple_repeat 4 104 0 235 350 0 0 chr9 79712017 79712097 -38150530 - MIR SINE MIR 0 262 183 243 175 0 0 chr9 79714478 79714535 -38148092 + (CA)n Simple_repeat Simple_repeat 1 57 0 234 337 32 11 chr9 79717304 79717399 -38145228 - L2 LINE L2 -230 3042 2946 306 253 169 39 chr9 79717536 79717690 -38144937 - L2 LINE L2 -177 3095 2922 245 281 180 0 chr9 79717858 79717997 -38144630 - L2 LINE L2 -591 2723 2560 390 213 13 0 chr9 79718144 79718219 -38144408 + L2 LINE L2 3234 3309 -4 196 228 0 140 chr9 79718468 79718525 -38144102 + L2 LINE L2 3192 3240 -32 447 264 102 12 chr9 79719271 79719438 -38143189 - MIR SINE MIR -32 230 49 252 379 46 0 chr9 79719555 79719729 -38142898 - L2 LINE L2 -1407 1907 1726 430 184 131 172 chr9 79720049 79720316 -38142311 + MIR SINE MIR 5 260 -2 213 277 96 24 chr9 79720864 79720947 -38141680 - MIR3 SINE MIR -118 90 2 229 308 127 54 chr9 79721005 79721226 -38141401 + L2 LINE L2 2869 3105 -167 323 188 16 47 chr9 79721235 79721299 -38141328 + L2 LINE L2 3211 3272 0 270 345 30 74 chr9 79721361 79721564 -38141063 - MIR3 SINE MIR -2 206 13 903 153 28 23 chr9 79721608 79721784 -38140843 - MER96B DNA MER1_type? -240 177 1 213 213 0 0 chr9 79722294 79722341 -38140286 + A-rich Low_complexity Low_complexity 1 47 0 314 269 184 37 chr9 79722390 79722597 -38140030 - MIR SINE MIR -24 238 5 321 276 79 53 chr9 79723610 79723838 -38138789 - L1ME4a LINE L1 -74 6047 5814 195 297 0 27 chr9 79723925 79723999 -38138628 - L2 LINE L2 0 3272 3201 335 316 39 12 chr9 79724087 79724233 -38138394 - MIR SINE MIR -41 167 25 556 321 10 20 chr9 79724768 79724964 -38137663 + MIR SINE MIR 2 195 -67 2275 130 8 27 chr9 79725138 79725507 -38137120 - THE1B LTR MaLR 0 364 3 21 0 0 0 chr9 79725514 79725535 -38137092 + AT_rich Low_complexity Low_complexity 1 21 0 182 333 93 56 chr9 79725894 79726002 -38136625 - L3 LINE CR1 -8 1569 1458 997 289 82 37 chr9 79726106 79726507 -38136120 + L2 LINE L2 2894 3312 -1 253 290 70 0 chr9 79726762 79726862 -38135765 - L3 LINE CR1 -132 1445 1339 2373 98 28 3 chr9 79728517 79728873 -38133754 - L1PB1 LINE L1 -4 6147 5783 313 221 47 0 chr9 79728897 79728983 -38133644 + L1MC4 LINE L1 6614 6703 -1339 293 241 23 0 chr9 79728963 79729050 -38133577 - L1MC4 LINE L1 -1339 6703 6615 * 249 108 0 0 chr9 79729062 79729099 -38133528 + (CATA)n Simple_repeat Simple_repeat 3 39 0 2841 92 7 12 chr9 79729101 79729526 -38133101 - L1P5 LINE L1 -361 5790 5368 1254 208 0 34 chr9 79729527 79729825 -38132802 + L1P5 LINE L1 5063 5350 -796 265 301 100 29 chr9 79729973 79730141 -38132486 + MIR SINE MIR 2 181 -62 215 284 34 11 chr9 79730974 79731062 -38131565 + (TGAA)n Simple_repeat Simple_repeat 2 91 0 600 259 156 5 chr9 79731288 79731512 -38131115 + MIR SINE MIR 1 258 -4 2417 80 0 13 chr9 79732020 79732333 -38130294 - AluY SINE Alu 0 311 3 1055 100 0 7 chr9 79732563 79732713 -38129914 - MER1B DNA MER1_type -59 280 132 664 309 79 46 chr9 79734478 79734996 -38127631 + L1MC/D LINE L1 5283 5817 -1991 708 263 142 19 chr9 79735089 79735294 -38127333 - MIR SINE MIR -30 232 3 2454 75 10 0 chr9 79735436 79735741 -38126886 + AluSx SINE Alu 1 308 -4 456 51 0 0 chr9 79736839 79736898 -38125729 + (CTA)n Simple_repeat Simple_repeat 1 59 0 192 40 0 0 chr9 79736898 79736923 -38125704 + (TC)n Simple_repeat Simple_repeat 2 26 0 300 313 49 21 chr9 79737392 79737536 -38125091 - L1ME4a LINE L1 -93 6028 5881 794 300 14 0 chr9 79737584 79737807 -38124820 + MIR SINE MIR 34 259 -3 732 203 18 12 chr9 79737867 79738030 -38124597 + MER20 DNA MER1_type 2 165 -54 442 284 66 49 chr9 79738151 79738394 -38124233 - MLT1H LTR MaLR -229 320 74 368 302 88 58 chr9 79738628 79739038 -38123589 + L2 LINE L2 2239 2660 -654 2158 119 0 7 chr9 79739494 79739813 -38122814 + AluSx SINE Alu 1 312 0 197 363 137 0 chr9 79740167 79740269 -38122358 - L3 LINE CR1 -1217 360 245 180 77 0 0 chr9 79740312 79740338 -38122289 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 386 285 29 15 chr9 79741613 79741750 -38120877 - MIR SINE MIR -12 250 112 194 341 24 0 chr9 79742698 79742780 -38119847 + L2 LINE L2 3189 3272 0 461 291 137 34 chr9 79743149 79743383 -38119244 - MIR SINE MIR -2 260 3 598 336 35 16 chr9 79744347 79744603 -38118024 - MIR SINE MIR 0 262 2 5802 137 10 7 chr9 79745140 79746198 -38116429 + L1MA8 LINE L1 5224 6285 -6 22 80 0 0 chr9 79746209 79746259 -38116368 + AT_rich Low_complexity Low_complexity 1 50 0 600 303 21 36 chr9 79746312 79746642 -38115985 + MARNA DNA Mariner 66 390 -196 351 78 0 0 chr9 79747143 79747194 -38115433 + MADE1 DNA Mariner 29 79 -1 230 319 86 61 chr9 79747230 79747393 -38115234 + L2 LINE L2 3105 3271 -1 375 23 0 0 chr9 79747742 79747786 -38114841 + (TG)n Simple_repeat Simple_repeat 2 45 0 317 292 158 19 chr9 79748868 79749077 -38113550 - MLT1J1 LTR MaLR -129 317 80 741 332 115 19 chr9 79749171 79749596 -38113031 + L2 LINE L2 2843 3308 -5 529 246 28 28 chr9 79749788 79749930 -38112697 - MLT1G LTR MaLR -6 561 420 297 96 27 27 chr9 79749940 79750013 -38112614 + (TGAA)n Simple_repeat Simple_repeat 2 74 0 576 260 27 54 chr9 79750065 79750252 -38112375 - MLT1G LTR MaLR -364 226 44 1533 199 79 22 chr9 79750252 79750655 -38111972 - MSTC LTR MaLR -2 426 1 576 260 27 54 chr9 79750655 79750690 -38111937 - MLT1G LTR MaLR -546 44 10 5141 169 44 13 chr9 79751408 79752471 -38110156 - L1MC3 LINE L1 -4 7781 6686 237 300 88 0 chr9 79752593 79752673 -38109954 - MIR SINE MIR -124 138 52 684 330 30 9 chr9 79753376 79753609 -38109018 + MIR SINE MIR 8 245 -17 293 247 13 0 chr9 79753707 79753784 -38108843 - MIR SINE MIR -2 260 183 341 243 131 28 chr9 79754873 79754980 -38107647 - MIR SINE MIR -64 144 27 629 240 17 45 chr9 79755123 79755302 -38107325 - MER5B DNA MER1_type -4 174 1 380 229 14 0 chr9 79755330 79755400 -38107227 + MER5A DNA MER1_type 20 90 -99 2544 146 71 14 chr9 79755508 79756003 -38106624 - L1MC3 LINE L1 -394 7391 6869 553 262 43 92 chr9 79756166 79756513 -38106114 + L2 LINE L2 2984 3313 0 244 287 187 52 chr9 79756585 79756986 -38105641 - L2 LINE L2 -561 2753 2299 237 119 0 0 chr9 79757188 79757230 -38105397 + (GA)n Simple_repeat Simple_repeat 1 42 0 1130 246 68 45 chr9 79757695 79758135 -38104492 - MLT1J2 LTR MaLR 0 450 1 301 291 48 29 chr9 79759922 79760025 -38102602 - MIR3 SINE MIR -34 174 70 489 286 165 30 chr9 79761256 79761651 -38100976 - L2 LINE L2 -61 3252 2805 1088 166 11 0 chr9 79761654 79761841 -38100786 + MER5A DNA MER1_type 1 189 0 373 300 114 7 chr9 79761841 79761971 -38100656 - L2 LINE L2 -504 2810 2666 856 273 105 0 chr9 79763136 79763422 -38099205 - LTR16A LTR ERVL -30 420 105 846 56 0 0 chr9 79763674 79763782 -38098845 + (GAA)n Simple_repeat Simple_repeat 3 110 0 198 0 0 0 chr9 79763784 79763806 -38098821 + (AGGGGG)n Simple_repeat Simple_repeat 2 23 0 975 159 14 0 chr9 79764447 79764616 -38098011 + AluSg/x SINE Alu 137 307 0 1171 254 60 81 chr9 79765056 79765484 -38097143 - HAL1 LINE L1 -587 1920 1511 2289 92 3 0 chr9 79765484 79765776 -38096851 - AluSg SINE Alu -17 293 1 1171 254 60 81 chr9 79765776 79766036 -38096591 - HAL1 LINE L1 -996 1511 1247 297 269 32 11 chr9 79766066 79766159 -38096468 - HAL1 LINE L1 -1706 801 707 1445 202 99 3 chr9 79766159 79766441 -38096186 + AluJb SINE Alu 1 309 -3 1706 267 119 19 chr9 79766501 79767110 -38095517 - HAL1 LINE L1 -1794 713 34 1947 92 85 21 chr9 79767110 79767392 -38095235 - AluSg1 SINE Alu -9 300 1 1706 267 119 19 chr9 79767392 79767429 -38095198 - HAL1 LINE L1 -2473 34 2 217 372 97 7 chr9 79767575 79767720 -38094907 + L3b LINE CR1 1269 1426 -157 21 0 0 0 chr9 79768322 79768343 -38094284 + AT_rich Low_complexity Low_complexity 1 21 0 524 303 128 5 chr9 79768627 79768815 -38093812 + MIR SINE MIR 13 223 -39 911 158 7 0 chr9 79769057 79769203 -38093424 - AluSg/x SINE Alu -11 299 153 693 110 0 0 chr9 79769205 79769305 -38093322 + AluSg/x SINE Alu 200 299 -10 209 139 23 0 chr9 79770277 79770320 -38092307 + (ATG)n Simple_repeat Simple_repeat 2 45 0 186 306 16 0 chr9 79770373 79770435 -38092192 - MIR SINE MIR -74 188 126 794 194 104 9 chr9 79771811 79772022 -38090605 - L1M4 LINE L1 -2057 4089 3859 707 320 28 3 chr9 79772160 79772444 -38090183 - LTR16A LTR ERVL -75 375 85 2070 147 3 13 chr9 79772797 79773110 -38089517 + AluSx SINE Alu 3 312 0 341 200 84 0 chr9 79774184 79774279 -38088348 + L1MA9 LINE L1 6173 6275 -37 32 57 0 0 chr9 79774279 79774332 -38088295 + AT_rich Low_complexity Low_complexity 1 53 0 528 282 67 15 chr9 79774992 79775187 -38087440 - MIR SINE MIR 0 262 58 396 0 0 0 chr9 79775187 79775231 -38087396 + (TAGA)n Simple_repeat Simple_repeat 4 47 0 236 296 56 39 chr9 79775453 79775686 -38086941 - L1ME LINE L1 -227 5894 5658 1449 192 113 59 chr9 79775774 79776217 -38086410 - MLT1C LTR MaLR 0 467 1 22 0 0 0 chr9 79776281 79776303 -38086324 + AT_rich Low_complexity Low_complexity 1 22 0 713 108 0 0 chr9 79776534 79776636 -38085991 + AluY SINE Alu 200 301 -10 294 345 41 37 chr9 79776743 79776811 -38085816 + L2 LINE L2 2418 2484 -830 1703 206 67 47 chr9 79776811 79777306 -38085321 - MLT1D LTR MaLR 0 505 1 294 345 41 37 chr9 79777306 79777483 -38085144 + L2 LINE L2 2484 2664 -650 732 346 36 55 chr9 79777516 79778013 -38084614 + L2 LINE L2 2782 3266 -6 234 312 112 39 chr9 79778070 79778275 -38084352 + L2 LINE L2 2844 3063 -250 1481 212 42 39 chr9 79778275 79778634 -38083993 + MLT1A2 LTR MaLR 4 363 -11 580 284 37 0 chr9 79778685 79778847 -38083780 - L3 LINE CR1 -863 714 547 521 340 123 14 chr9 79779474 79779912 -38082715 + L2 LINE L2 2474 2959 -355 185 271 17 34 chr9 79780180 79780239 -38082388 - L2 LINE L2 -6 3307 3250 * 251 245 0 0 chr9 79780207 79780260 -38082367 - MIR SINE MIR -26 236 184 478 283 57 13 chr9 79781137 79781296 -38081331 - MIR SINE MIR -77 185 20 1371 176 0 9 chr9 79782328 79782555 -38080072 + AluJo SINE Alu 1 225 -87 868 194 56 6 chr9 79782658 79782838 -38079789 - MER5A DNA MER1_type 0 189 1 357 353 47 72 chr9 79783230 79783694 -38078933 - L2 LINE L2 -173 3099 2662 289 323 60 8 chr9 79784171 79784304 -38078323 + MIR3 SINE MIR 9 148 -60 375 281 62 31 chr9 79784396 79784524 -38078103 + MIR SINE MIR 19 150 -112 199 309 0 0 chr9 79784678 79784720 -38077907 + MIR3 SINE MIR 143 184 -24 1846 189 0 15 chr9 79784903 79785246 -38077381 - MER2 DNA MER2_type -4 340 3 329 0 24 0 chr9 79786136 79786177 -38076450 + (TG)n Simple_repeat Simple_repeat 2 43 0 516 349 71 17 chr9 79786186 79786424 -38076203 - MIR SINE MIR -11 251 1 189 0 0 0 chr9 79787532 79787553 -38075074 + (T)n Simple_repeat Simple_repeat 1 21 0 41161 30 21 1 chr9 79787583 79793613 -38069014 - L1PA2 LINE L1 0 6155 2 334 376 0 0 chr9 79793739 79793856 -38068771 + L2 LINE L2 3151 3267 -5 370 237 52 59 chr9 79793912 79794047 -38068580 + MER94 DNA DNA 1 134 0 776 165 31 58 chr9 79794238 79794399 -38068228 + Charlie1 DNA MER1_type 2544 2699 -62 2249 54 10 61 chr9 79794399 79794712 -38067915 - AluY SINE Alu -14 297 1 776 165 31 58 chr9 79794712 79794774 -38067853 + Charlie1 DNA MER1_type 2699 2761 0 455 303 127 19 chr9 79795678 79796111 -38066516 + L1MC4a LINE L1 5395 5874 -1934 365 299 34 25 chr9 79796256 79796460 -38066167 + L1ME4a LINE L1 5577 5782 -339 242 243 48 29 chr9 79796576 79796679 -38065948 + L1ME4a LINE L1 6017 6121 0 210 179 0 0 chr9 79799051 79799107 -38063520 + A-rich Low_complexity Low_complexity 1 56 0 564 211 70 0 chr9 79799636 79799778 -38062849 - MIR SINE MIR -41 221 70 232 175 0 0 chr9 79799778 79799818 -38062809 - LTR33 LTR ERVL 0 521 482 334 329 130 5 chr9 79799880 79800087 -38062540 - LTR33 LTR ERVL -236 285 53 206 250 206 0 chr9 79800819 79800887 -38061740 - L2 LINE L2 -14 3299 3218 21 36 0 0 chr9 79803676 79803704 -38058923 + AT_rich Low_complexity Low_complexity 1 28 0 514 235 66 20 chr9 79803716 79803912 -38058715 - L1ME3A LINE L1 -5 6165 5961 442 179 0 12 chr9 79804068 79804152 -38058475 + AluJo/FLAM SINE Alu 48 130 -182 2606 62 7 0 chr9 79804152 79804461 -38058166 + AluY SINE Alu 1 311 0 674 150 9 18 chr9 79804473 79804586 -38058041 + FRAM SINE Alu 41 152 -24 496 113 0 0 chr9 79804596 79804667 -38057960 + AluS SINE Alu 1 71 -241 21 36 0 0 chr9 79805268 79805296 -38057331 + AT_rich Low_complexity Low_complexity 1 28 0 210 118 0 0 chr9 79806650 79806684 -38055943 + (A)n Simple_repeat Simple_repeat 1 34 0 180 0 0 0 chr9 79807780 79807800 -38054827 + (TTG)n Simple_repeat Simple_repeat 2 21 0 21 36 0 0 chr9 79807957 79807985 -38054642 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr9 79808121 79808152 -38054475 + AT_rich Low_complexity Low_complexity 1 31 0 1670 111 0 0 chr9 79811481 79811724 -38050903 + MER41B LTR ERV1 305 547 -88 400 279 122 0 chr9 79811773 79811920 -38050707 + MIR SINE MIR 88 252 -10 204 40 0 0 chr9 79812556 79812581 -38050046 + (TC)n Simple_repeat Simple_repeat 1 25 0 3073 117 24 0 chr9 79814092 79814553 -38048074 - HERVK14 LTR ERVK -3769 2176 1705 5031 78 13 1 chr9 79814587 79815278 -38047349 - HERVK14 LTR ERVK -5246 699 1 4225 89 40 2 chr9 79815278 79815861 -38046766 - LTR14B LTR ERVK 0 608 4 2181 105 10 0 chr9 79816515 79816810 -38045817 + AluSx SINE Alu 4 301 -11 450 325 101 5 chr9 79817574 79817762 -38044865 - MIR SINE MIR -4 258 53 23 33 0 0 chr9 79818148 79818178 -38044449 + AT_rich Low_complexity Low_complexity 1 30 0 3742 51 2 6 chr9 79819019 79819508 -38043119 - L1PA5 LINE L1 -88 6066 5580 * 15713 49 3 9 chr9 79819485 79820175 -38042452 + L1P2 LINE L1 3295 3987 -2167 2145 92 0 36 chr9 79820175 79820479 -38042148 + AluY SINE Alu 3 295 -16 15713 49 3 9 chr9 79820479 79822126 -38040501 + L1P2 LINE L1 3987 5619 -535 303 290 84 19 chr9 79822242 79822397 -38040230 + MER117 DNA MER1_type 32 196 -1 327 294 113 89 chr9 79824097 79824512 -38038115 + HAL1 LINE L1 1183 1607 -900 227 254 18 0 chr9 79824758 79824813 -38037814 - L2 LINE L2 0 3272 3217 345 276 232 17 chr9 79826154 79826335 -38036292 + MIR SINE MIR 19 238 -24 498 204 43 0 chr9 79827689 79827782 -38034845 - L2 LINE L2 -2 3270 3174 1432 194 52 31 chr9 79827931 79828220 -38034407 - AluJo SINE Alu -17 295 1 1771 131 39 18 chr9 79828257 79828284 -38034343 - L1MA8 LINE L1 -4 6287 6262 2183 121 3 0 chr9 79828284 79828574 -38034053 + AluSq SINE Alu 2 292 -21 1771 131 39 18 chr9 79828574 79828881 -38033746 - L1MA8 LINE L1 -29 6262 5946 493 96 0 0 chr9 79828885 79828958 -38033669 + L1MA8 LINE L1 5843 5915 -385 392 203 89 0 chr9 79829177 79829256 -38033371 + MER5A DNA MER1_type 1 86 -103 1520 146 24 17 chr9 79829256 79829543 -38033084 - MLT1B LTR MaLR 0 390 102 3993 59 33 0 chr9 79829543 79830055 -38032572 - L1PA6 LINE L1 -4 6150 5622 21 0 0 0 chr9 79830521 79830542 -38032085 + AT_rich Low_complexity Low_complexity 1 21 0 2189 82 23 33 chr9 79830712 79831015 -38031612 + AluSp SINE Alu 1 300 -13 660 272 48 44 chr9 79831207 79831523 -38031104 - MLT1I LTR MaLR -22 387 71 380 341 14 7 chr9 79831746 79831884 -38030743 + L3 LINE CR1 1437 1575 -2 307 327 40 11 chr9 79832544 79832822 -38029805 + L1ME LINE L1 5541 5826 -295 2485 50 0 13 chr9 79832825 79833125 -38029502 + AluY SINE Alu 1 296 -15 556 264 61 12 chr9 79834528 79834691 -38027936 - MIR3 SINE MIR -1 207 37 233 383 40 32 chr9 79834901 79835152 -38027475 - L2 LINE L2 -257 3056 2804 228 344 169 0 chr9 79836034 79836188 -38026439 + MER5A DNA MER1_type 7 186 -3 926 288 51 46 chr9 79836308 79836700 -38025927 + LTR16C LTR ERVL 98 491 0 1055 204 20 119 chr9 79837164 79837567 -38025060 - MLT1A1 LTR MaLR -2 363 1 489 271 115 21 chr9 79837702 79837894 -38024733 + MIR SINE MIR 19 228 -34 968 302 58 11 chr9 79838778 79839155 -38023472 - LTR16C LTR ERVL 0 491 97 329 44 0 0 chr9 79839506 79839551 -38023076 + MADE1 DNA Mariner 1 45 -35 380 314 64 41 chr9 79839648 79839820 -38022807 + MIR3 SINE MIR 30 205 -3 304 178 34 8 chr9 79839899 79840017 -38022610 + (TA)n Simple_repeat Simple_repeat 2 122 0 423 326 43 22 chr9 79841425 79841609 -38021018 - MER5A DNA MER1_type 0 189 2 188 375 0 0 chr9 79841963 79842027 -38020600 - L2 LINE L2 -3 3310 3247 26 30 0 0 chr9 79843328 79843361 -38019266 + AT_rich Low_complexity Low_complexity 1 33 0 426 293 29 0 chr9 79844224 79844364 -38018263 + Charlie8 DNA MER1_type 129 272 -2145 201 209 0 0 chr9 79845141 79845184 -38017443 + MIR SINE MIR 90 132 -130 958 164 17 17 chr9 79845294 79845471 -38017156 + MER5A DNA MER1_type 7 183 -6 2410 53 0 0 chr9 79847015 79847322 -38015305 - AluY SINE Alu 0 307 1 2074 164 3 5 chr9 79847431 79847808 -38014819 - L1M2 LINE L1 -517 5774 5399 330 89 67 0 chr9 79847811 79847901 -38014726 + (TA)n Simple_repeat Simple_repeat 2 97 0 3646 175 29 7 chr9 79847906 79848723 -38013904 - L1M2 LINE L1 -762 5384 4550 596 129 0 0 chr9 79848790 79848883 -38013744 + (TG)n Simple_repeat Simple_repeat 2 94 0 231 114 0 0 chr9 79848883 79848918 -38013709 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 2713 86 21 5 chr9 79848918 79849303 -38013324 - MLT2A1 LTR ERVL -53 391 1 12073 84 21 4 chr9 79849303 79850996 -38011631 - HERVL-A1 LTR ERVL 0 5654 3933 484 314 106 32 chr9 79851190 79851531 -38011096 + L1ME LINE L1 5264 5629 -541 1999 168 34 13 chr9 79851566 79852013 -38010614 + L1 LINE L1 4311 4766 -1380 4046 247 72 3 chr9 79852017 79853184 -38009443 - L1MDa LINE L1 -5276 1264 18 1068 149 95 4 chr9 79853540 79853782 -38008845 - ORSL DNA AcHobo -10 265 2 290 342 34 34 chr9 79853798 79853947 -38008680 - L2 LINE L2 -221 3051 2903 1218 196 5 5 chr9 79854841 79855061 -38007566 - AluJb SINE Alu -8 304 85 614 227 22 49 chr9 79855068 79855253 -38007374 - MER20 DNA MER1_type -5 214 35 260 267 13 13 chr9 79855546 79855621 -38007006 - ORSL DNA AcHobo 0 275 201 1895 236 46 19 chr9 79856017 79856580 -38006047 + L1MEc LINE L1 39 616 -5780 23 0 0 0 chr9 79857220 79857243 -38005384 + AT_rich Low_complexity Low_complexity 1 23 0 1750 199 0 20 chr9 79858067 79858373 -38004254 - AluJb SINE Alu -12 300 1 1388 113 120 35 chr9 79858462 79858745 -38003882 + THE1B LTR MaLR 1 307 -57 229 135 39 58 chr9 79858870 79858922 -38003705 - MLT1B LTR MaLR -339 51 1 188 312 70 64 chr9 79859199 79859356 -38003271 + L2 LINE L2 1129 1286 -2028 377 246 193 0 chr9 79859389 79859503 -38003124 + L2 LINE L2 3124 3259 -54 581 302 10 2 chr9 79859981 79860144 -38002483 + MIR SINE MIR 2 167 -41 417 294 159 0 chr9 79860780 79860950 -38001677 + MIR SINE MIR 66 262 0 240 220 20 0 chr9 79861909 79861959 -38000668 + L2 LINE L2 3262 3312 -1 405 183 19 58 chr9 79862432 79862536 -38000091 + L1MC1 LINE L1 6224 6323 -10 576 330 38 0 chr9 79863395 79863607 -37999020 + MIR SINE MIR 20 239 -23 289 286 0 0 chr9 79863604 79863674 -37998953 - MIR SINE MIR -154 108 39 * 343 365 116 11 chr9 79863639 79863828 -37998799 + MIR SINE MIR 36 244 -18 230 313 91 10 chr9 79863861 79863960 -37998667 - L2 LINE L2 -13 3300 3194 259 192 126 69 chr9 79863981 79864086 -37998541 - MIR SINE MIR -62 146 64 276 274 159 41 chr9 79864273 79864444 -37998183 + MIR SINE MIR 3 192 -70 675 316 11 0 chr9 79864622 79864812 -37997815 + MER91A DNA MER1_type 4 195 -1 1013 144 37 0 chr9 79865126 79865314 -37997313 - L1MA3 LINE L1 0 6305 6111 424 247 32 0 chr9 79865526 79865619 -37997008 + L2 LINE L2 3161 3256 -16 226 320 157 49 chr9 79867002 79867308 -37995319 - L2 LINE L2 0 3272 2934 2616 96 31 0 chr9 79867538 79867891 -37994736 + THE1B LTR MaLR 1 364 0 228 308 22 33 chr9 79868551 79868642 -37993985 + L2 LINE L2 2966 3055 -217 2049 151 0 16 chr9 79869356 79869673 -37992954 + AluSx SINE Alu 1 312 0 719 262 26 5 chr9 79869682 79869873 -37992754 - MIR SINE MIR -56 206 12 227 250 0 0 chr9 79870768 79870812 -37991815 + L2 LINE L2 3265 3308 -5 428 269 22 71 chr9 79871949 79872131 -37990496 - MIR SINE MIR -59 203 31 582 271 47 21 chr9 79872457 79872649 -37989978 - MIR SINE MIR -18 244 48 258 219 208 10 chr9 79872902 79872998 -37989629 - L3 LINE CR1 -105 1472 1358 347 314 94 19 chr9 79873717 79873876 -37988751 - MIR SINE MIR -19 243 73 1272 298 26 19 chr9 79875277 79875700 -37986927 + LTR16C LTR ERVL 64 489 -2 776 348 96 32 chr9 79875898 79876081 -37986546 + L2 LINE L2 1818 1988 -1326 1949 151 3 28 chr9 79876081 79876400 -37986227 - AluSx SINE Alu -1 311 1 776 348 96 32 chr9 79876400 79876928 -37985699 + L2 LINE L2 1988 2574 -740 211 308 48 29 chr9 79877052 79877156 -37985471 + L2 LINE L2 2619 2724 -590 1915 181 0 6 chr9 79877534 79877848 -37984779 - AluJb SINE Alu 0 312 1 329 333 16 8 chr9 79877998 79878124 -37984503 + L2 LINE L2 3184 3310 -3 273 173 19 0 chr9 79878164 79878216 -37984411 + MSTD LTR MaLR 1 53 -343 2216 115 3 0 chr9 79878217 79878512 -37984115 + AluSp SINE Alu 1 296 -17 2677 35 9 9 chr9 79878659 79879005 -37983622 - L1PA5 LINE L1 -229 5925 5580 * 15867 42 5 7 chr9 79878982 79879669 -37982958 + L1P1 LINE L1 3295 3982 -2173 2199 86 0 30 chr9 79879669 79879973 -37982654 + AluY SINE Alu 1 295 -16 15867 42 5 7 chr9 79879973 79881814 -37980813 + L1P1 LINE L1 3982 5816 -339 362 221 58 13 chr9 79882000 79882154 -37980473 - L1MC4 LINE L1 -274 7768 7608 404 253 53 12 chr9 79882174 79882344 -37980283 - L1M4 LINE L1 -2747 3399 3223 866 208 194 35 chr9 79882347 79882838 -37979789 - L1M4 LINE L1 -3159 2987 2419 4283 78 19 31 chr9 79882912 79884057 -37978570 + MER11A LTR ERVK 1 1266 0 635 285 70 4 chr9 79884225 79884658 -37977969 - L1ME3A LINE L1 -274 5896 5266 3210 185 72 17 chr9 79886148 79886844 -37975783 - MER50 LTR ERV1 0 734 1 257 213 153 53 chr9 79887249 79887346 -37975281 - L1M4 LINE L1 -3848 2298 2179 1741 168 0 46 chr9 79887346 79887673 -37974954 - AluJo SINE Alu 0 312 1 257 213 153 53 chr9 79887673 79887725 -37974902 - L1M4 LINE L1 -3967 2179 2134 222 204 0 20 chr9 79887834 79887866 -37974761 + (CA)n Simple_repeat Simple_repeat 2 34 -15 2225 101 3 14 chr9 79887866 79888163 -37974464 + AluSx SINE Alu 1 294 -18 222 204 0 20 chr9 79888163 79888179 -37974448 + (CA)n Simple_repeat Simple_repeat 34 49 0 570 249 75 47 chr9 79888199 79888412 -37974215 + MLT1G1 LTR MaLR 60 278 -317 1464 141 49 4 chr9 79888426 79888802 -37973825 - LTR47A LTR ERVL -9 443 1 2354 152 47 51 chr9 79888819 79889623 -37973004 - LOR1-int LTR ERV1 -632 5699 5228 677 59 0 0 chr9 79889623 79889708 -37972919 + AluS SINE Alu 2 86 -227 9427 88 16 2 chr9 79889715 79891373 -37971254 - L1P3 LINE L1 -536 5618 3934 1928 156 8 28 chr9 79891373 79891732 -37970895 - LOR1-int LTR ERV1 -2174 4584 4233 751 152 31 31 chr9 79891730 79891921 -37970706 - LOR1-int LTR ERV1 -3743 4377 4187 * 606 71 8 134 chr9 79891924 79892051 -37970576 + L1P4 LINE L1 5647 5757 -404 1868 161 39 0 chr9 79892963 79893293 -37969334 - MER61A LTR ERV1 0 343 1 2252 143 22 3 chr9 79893571 79893928 -37968699 - THE1B LTR MaLR 0 364 1 297 109 0 0 chr9 79895724 79895770 -37966857 - L1P4 LINE L1 -308 5853 5808 360 318 62 56 chr9 79896057 79896394 -37966233 - L1MCc LINE L1 -5973 450 112 2000 129 66 0 chr9 79896741 79897089 -37965538 - L1PA16 LINE L1 0 6166 5796 1338 176 70 8 chr9 79898472 79898728 -37963899 + AluJb SINE Alu 34 305 -7 229 218 36 0 chr9 79898731 79898786 -37963841 + MIR SINE MIR 194 250 -12 22 80 0 0 chr9 79899748 79899798 -37962829 + AT_rich Low_complexity Low_complexity 1 50 0 26 50 0 0 chr9 79900594 79900634 -37961993 + AT_rich Low_complexity Low_complexity 1 40 0 412 139 0 25 chr9 79900967 79901046 -37961581 - Alu SINE Alu -2 310 234 1501 194 50 7 chr9 79901263 79901546 -37961081 + AluJb SINE Alu 1 295 -17 229 218 36 0 chr9 79901549 79901604 -37961023 + MIR SINE MIR 194 250 -12 1921 122 11 0 chr9 79901914 79902177 -37960450 - AluSx SINE Alu -4 308 43 24 53 0 0 chr9 79902177 79902215 -37960412 + AT_rich Low_complexity Low_complexity 1 38 0 1784 138 20 0 chr9 79902913 79903211 -37959416 + L1MA7 LINE L1 5988 6291 0 2171 116 10 0 chr9 79903215 79903518 -37959109 + AluSx SINE Alu 1 306 -6 188 337 0 11 chr9 79903535 79903624 -37959003 - MIR3 SINE MIR -1 207 120 185 389 225 8 chr9 79904008 79904252 -37958375 + L2 LINE L2 2554 2850 -464 282 240 0 13 chr9 79904911 79904986 -37957641 - MLT1L LTR MaLR -541 74 1 1245 177 25 0 chr9 79905028 79905231 -37957396 - AluJo SINE Alu -18 294 87 2293 134 53 38 chr9 79907934 79908352 -37954275 + MSTA LTR MaLR 1 424 -4 243 0 0 0 chr9 79909020 79909047 -37953580 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1714 164 26 0 chr9 79909051 79909319 -37953308 - AluSx SINE Alu -37 275 1 21 0 0 0 chr9 79909819 79909840 -37952787 + AT_rich Low_complexity Low_complexity 1 21 0 393 121 12 60 chr9 79909854 79909937 -37952690 + THE1B LTR MaLR 203 281 -83 727 174 0 0 chr9 79909937 79910052 -37952575 - FLAM_C SINE Alu -28 115 1 274 29 0 0 chr9 79910505 79910540 -37952087 + MSTA LTR MaLR 1 35 -393 4787 87 1 1 chr9 79910540 79911196 -37951431 + THE1B-int LTR MaLR 925 1580 0 1813 102 33 26 chr9 79911196 79911501 -37951126 + THE1B LTR MaLR 1 307 -57 745 202 0 0 chr9 79911516 79911635 -37950992 - FLAM_A SINE Alu -13 120 2 313 235 12 12 chr9 79911642 79911723 -37950904 + Zaphod DNA AcHobo 3951 4031 0 786 149 34 20 chr9 79911741 79911889 -37950738 + MLT1A2 LTR MaLR 1 150 -215 24 32 0 0 chr9 79912428 79912459 -37950168 + AT_rich Low_complexity Low_complexity 1 31 0 865 258 14 0 chr9 79912459 79912676 -37949951 + MLT1A2 LTR MaLR 155 374 0 6074 193 149 43 chr9 79912676 79914244 -37948383 + MLT1A1-int LTR MaLR 1 1735 0 1546 233 22 6 chr9 79914246 79914600 -37948027 + MLT1A1 LTR MaLR 3 396 0 5101 145 28 31 chr9 79915098 79916002 -37946625 - MER54A LTR ERVL 0 901 1 2412 100 0 0 chr9 79916457 79916768 -37945859 + AluY SINE Alu 1 311 0 453 250 8 39 chr9 79917881 79918009 -37944618 - L2 LINE L2 -4 3309 3186 276 343 97 0 chr9 79918043 79918177 -37944450 + L2 LINE L2 2949 3095 -177 318 118 0 0 chr9 79918253 79918304 -37944323 - MER58A DNA MER1_type 0 224 174 225 94 0 0 chr9 79918313 79918345 -37944282 - MLT2C2 LTR ERVL 0 464 433 252 73 55 127 chr9 79918355 79918408 -37944219 + Tigger4(Zombi) DNA MER2_type 1 49 -2682 335 259 29 2 chr9 79918408 79918545 -37944082 - MER58A DNA MER1_type 0 164 1 186 233 0 0 chr9 79918598 79918641 -37943986 + L2 LINE L2 3267 3309 -4 420 219 82 55 chr9 79919798 79919944 -37942683 - MIR SINE MIR -111 151 2 447 319 62 21 chr9 79920155 79920299 -37942328 + MER5A DNA MER1_type 17 166 -23 383 252 30 99 chr9 79921744 79921875 -37940752 - L2 LINE L2 -1 3271 3150 953 213 10 5 chr9 79921878 79922085 -37940542 + MER3 DNA MER1_type 2 209 0 1693 279 19 26 chr9 79922231 79922766 -37939861 - REP3 LTR ERV -28 534 4 280 293 60 26 chr9 79922791 79922907 -37939720 - L2 LINE L2 -528 2786 2667 230 353 54 60 chr9 79922983 79923167 -37939460 - L2 LINE L2 -15 3257 3075 2323 103 0 0 chr9 79923491 79923792 -37938835 - AluSg SINE Alu -9 301 1 237 270 0 27 chr9 79924131 79924205 -37938422 + Charlie8 DNA MER1_type 2346 2417 0 309 339 16 16 chr9 79924654 79924781 -37937846 + MIR SINE MIR 49 175 -87 359 130 0 0 chr9 79924923 79924977 -37937650 + THE1B LTR MaLR 311 364 0 208 208 0 42 chr9 79926067 79926115 -37936512 + CT-rich Low_complexity Low_complexity 4 49 0 22 35 0 0 chr9 79926410 79926439 -37936188 + AT_rich Low_complexity Low_complexity 1 29 0 254 154 0 19 chr9 79926839 79926891 -37935736 + MER96 DNA MER1_type? 125 175 0 22 35 0 0 chr9 79927340 79927369 -37935258 + AT_rich Low_complexity Low_complexity 1 29 0 2379 158 16 12 chr9 79927893 79928323 -37934304 + MSTB1 LTR MaLR 1 432 0 195 184 0 0 chr9 79928871 79928909 -37933718 + GA-rich Low_complexity Low_complexity 4 41 0 339 329 121 0 chr9 79929358 79929498 -37933129 + MIR SINE MIR 11 167 -95 2236 102 16 67 chr9 79930180 79930554 -37932073 - THE1A LTR MaLR 0 355 1 2478 50 0 3 chr9 79930618 79930915 -37931712 - AluY SINE Alu -15 296 1 306 0 0 0 chr9 79930944 79930978 -37931649 + (TG)n Simple_repeat Simple_repeat 2 35 0 466 247 174 0 chr9 79931893 79932048 -37930579 + MER5A DNA MER1_type 4 189 0 2406 77 0 0 chr9 79932160 79932459 -37930168 + AluSg SINE Alu 1 299 -11 411 311 183 9 chr9 79932586 79932805 -37929822 - MIR SINE MIR 0 262 6 202 368 32 11 chr9 79933096 79933191 -37929436 + MIR SINE MIR 31 127 -81 210 302 42 21 chr9 79933496 79933592 -37929035 + MER5A DNA MER1_type 68 165 -24 271 269 128 43 chr9 79934086 79934227 -37928400 - MIR SINE MIR -56 206 54 216 0 0 0 chr9 79934491 79934515 -37928112 + (CAGCT)n Simple_repeat Simple_repeat 5 28 0 1267 219 104 0 chr9 79935219 79935498 -37927129 - AluJo SINE Alu -4 308 1 233 236 62 56 chr9 79935666 79935810 -37926817 - L1M4 LINE L1 -2101 4045 3901 305 213 12 25 chr9 79935810 79935890 -37926737 + MIR SINE MIR 184 262 0 349 245 79 7 chr9 79936113 79936252 -37926375 - L1M4 LINE L1 -2860 3286 3138 706 219 151 67 chr9 79936622 79937193 -37925434 + L1MC5 LINE L1 7313 7931 -30 351 289 109 29 chr9 79937473 79937784 -37924843 - HAL1 LINE L1 -847 1660 1325 246 217 0 17 chr9 79937792 79937852 -37924775 + MLT1A1 LTR MaLR 1 59 -306 1030 197 18 96 chr9 79937912 79938247 -37924380 + MLT1A1 LTR MaLR 57 365 0 270 250 19 75 chr9 79938252 79938412 -37924215 - HAL1 LINE L1 -1188 1319 1169 672 334 159 37 chr9 79939828 79940534 -37922093 + L2 LINE L2 2489 3272 0 3088 133 83 30 chr9 79940680 79941759 -37920868 + MER11A LTR ERVK 1 1236 0 2322 103 3 0 chr9 79945166 79945467 -37917160 - AluSp SINE Alu -11 302 1 1624 163 91 0 chr9 79945535 79945811 -37916816 - AluJo SINE Alu -10 302 2 437 282 132 41 chr9 79946260 79946579 -37916048 - L1M4 LINE L1 -3111 3035 2688 1962 94 0 0 chr9 79947198 79947452 -37915175 - AluSq SINE Alu 0 313 60 189 147 0 0 chr9 79947490 79947524 -37915103 + (TA)n Simple_repeat Simple_repeat 1 34 0 242 140 60 20 chr9 79947525 79947575 -37915052 - MIR SINE MIR -126 136 85 339 171 29 0 chr9 79947591 79947696 -37914931 + (TA)n Simple_repeat Simple_repeat 2 109 0 409 216 101 40 chr9 79948523 79948671 -37913956 + MIR SINE MIR 36 192 -70 185 344 80 49 chr9 79949034 79949197 -37913430 - L2 LINE L2 -65 3207 3040 1542 104 0 5 chr9 79950021 79950233 -37912394 + AluSg/x SINE Alu 71 281 -29 420 223 61 117 chr9 79950557 79950623 -37912004 + MIR SINE MIR 61 129 -133 2113 140 0 6 chr9 79950623 79950937 -37911690 - AluJb SINE Alu 0 312 1 420 223 61 117 chr9 79950937 79951067 -37911560 + MIR SINE MIR 129 246 -16 742 181 0 15 chr9 79951242 79951375 -37911252 - AluJo SINE Alu -178 134 4 276 289 93 0 chr9 79952258 79952355 -37910272 + MIR SINE MIR 107 212 -50 626 243 87 5 chr9 79952358 79952543 -37910084 - MIR SINE MIR 0 262 63 2443 70 0 3 chr9 79952967 79953269 -37909358 - AluY SINE Alu -7 304 4 437 200 51 11 chr9 79953320 79953429 -37909198 + MIR SINE MIR 36 154 -62 1447 164 48 7 chr9 79954164 79954457 -37908170 + L1MA4 LINE L1 5989 6293 -7 568 208 26 19 chr9 79954614 79954768 -37907859 + Tigger1 DNA MER2_type 3 157 -2261 * 1199 114 13 53 chr9 79954756 79954983 -37907644 + Tigger1 DNA MER2_type 2201 2418 0 760 178 80 19 chr9 79955395 79955608 -37907019 + L1ME1 LINE L1 5774 5999 -167 255 206 55 0 chr9 79955619 79955692 -37906935 + L1MA10 LINE L1 6249 6325 -9 238 288 248 0 chr9 79959646 79959771 -37902856 + MIR3 SINE MIR 41 196 -12 1599 179 120 32 chr9 79960877 79961318 -37901309 - MLT1D LTR MaLR -5 500 21 255 189 0 0 chr9 79964170 79964223 -37898404 + (CA)n Simple_repeat Simple_repeat 1 53 0 453 319 0 8 chr9 79964956 79965075 -37897552 + L2 LINE L2 3196 3313 0 2092 130 6 13 chr9 79965828 79966143 -37896484 + AluSq SINE Alu 1 313 0 2138 125 10 0 chr9 79966148 79966452 -37896175 + AluSx SINE Alu 5 311 -1 982 252 29 20 chr9 79967151 79967397 -37895230 - MIR SINE MIR 0 262 15 25 31 0 0 chr9 79968092 79968124 -37894503 + AT_rich Low_complexity Low_complexity 1 32 0 1645 166 29 18 chr9 79968971 79969248 -37893379 + AluJb SINE Alu 15 294 -18 849 204 17 74 chr9 79969435 79969666 -37892961 + MER20 DNA MER1_type 2 219 0 569 277 87 21 chr9 79970542 79970784 -37891843 + L2 LINE L2 3055 3312 -1 21 0 0 0 chr9 79971143 79971164 -37891463 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr9 79971412 79971442 -37891185 + AT_rich Low_complexity Low_complexity 1 30 0 361 221 36 97 chr9 79972217 79972412 -37890215 - L1ME4a LINE L1 0 6121 5939 28420 24 4 0 chr9 79972471 79976766 -37885861 - L1PA3 LINE L1 -3 6152 1845 268 268 13 72 chr9 79977334 79977413 -37885214 + MIR SINE MIR 89 156 -106 2061 132 3 0 chr9 79977413 79977709 -37884918 + AluSx SINE Alu 1 297 -15 268 268 13 72 chr9 79977709 79977782 -37884845 + MIR SINE MIR 156 232 -30 185 200 75 0 chr9 79977834 79977874 -37884753 - L2 LINE L2 -755 2559 2517 707 146 35 62 chr9 79979505 79979703 -37882924 + MER6 DNA MER2_type -65 861 -4 190 319 44 44 chr9 79979873 79979964 -37882663 + L2 LINE L2 3176 3266 -47 8711 153 42 70 chr9 79980111 79980820 -37881807 - L1 LINE L1 -801 5345 4618 770 175 0 0 chr9 79980820 79980946 -37881681 + FLAM_C SINE Alu 1 126 -17 8711 153 42 70 chr9 79980946 79982227 -37880400 - L1 LINE L1 -1528 4618 3287 332 174 101 67 chr9 79982358 79982507 -37880120 - L1 LINE L1 -2850 3296 3143 * 10626 178 39 5 chr9 79982496 79984856 -37877771 - L1 LINE L1 -1313 5793 3355 1427 164 26 22 chr9 79984866 79985189 -37877438 - L1 LINE L1 -4882 2155 1821 1862 222 20 55 chr9 79985225 79985771 -37876856 - L1 LINE L1 -6497 533 7 323 331 32 19 chr9 79986079 79986236 -37876391 + MIR SINE MIR 50 208 -54 622 269 22 28 chr9 79986323 79986505 -37876122 + MIR3 SINE MIR 26 206 -2 181 238 0 0 chr9 79987712 79987754 -37874873 + L3b LINE CR1 1301 1342 -241 555 237 22 22 chr9 79989151 79989290 -37873337 - MIR3 SINE MIR -11 197 59 233 349 9 28 chr9 79989714 79989820 -37872807 + MIR3 SINE MIR 84 187 -21 296 282 29 0 chr9 79991061 79991164 -37871463 - L1ME LINE L1 -341 5780 5675 21 0 0 0 chr9 79992188 79992209 -37870418 + AT_rich Low_complexity Low_complexity 1 21 0 296 236 260 16 chr9 79992739 79992866 -37869761 - MIR SINE MIR -19 243 86 24 0 0 0 chr9 79993325 79993349 -37869278 + AT_rich Low_complexity Low_complexity 1 24 0 318 289 12 0 chr9 79995090 79995173 -37867454 - MIR3 SINE MIR -3 205 122 326 224 0 15 chr9 79995448 79995515 -37867112 - MIR SINE MIR -103 105 40 2712 53 6 14 chr9 79995828 79996184 -37866443 - L1PA5 LINE L1 0 6154 5802 435 106 0 30 chr9 79996314 79996380 -37866247 - Alu SINE Alu -254 64 1 1791 111 115 11 chr9 79997674 79997953 -37864674 - AluSg SINE Alu -2 308 1 2249 89 0 3 chr9 79998092 79998383 -37864244 - AluSg SINE Alu -20 290 1 397 289 10 0 chr9 79999229 79999326 -37863301 + MER81 DNA DNA 4 101 -13 235 150 33 17 chr9 80000156 80000216 -37862411 + GA-rich Low_complexity Low_complexity 5 65 0 538 258 94 0 chr9 80000241 80000400 -37862227 - MIR SINE MIR -31 231 58 208 292 115 31 chr9 80000490 80000586 -37862041 + MIR SINE MIR 79 182 -80 5333 59 0 3 chr9 80000929 80001604 -37861023 - L1PA7 LINE L1 0 6154 5482 532 205 185 60 chr9 80001739 80001939 -37860688 + MIR SINE MIR 6 230 -32 2731 90 71 0 chr9 80002104 80002515 -37860112 - L1PA12 LINE L1 0 6168 5729 209 307 36 72 chr9 80002684 80002850 -37859777 - L2 LINE L2 0 3313 3154 260 263 0 0 chr9 80003013 80003070 -37859557 + MIR SINE MIR 187 243 -19 443 328 114 61 chr9 80003203 80003841 -37858786 + L2 LINE L2 2081 2752 -562 589 199 193 23 chr9 80003847 80004018 -37858609 + MLT1A1 LTR MaLR 4 203 -162 1849 118 45 24 chr9 80004020 80004535 -37858092 + MER4A LTR ERV1 1 664 0 617 227 80 0 chr9 80004538 80004688 -37857939 + MLT1A1 LTR MaLR 204 365 0 376 322 138 19 chr9 80004978 80005239 -37857388 + L3 LINE CR1 477 768 -809 207 342 13 25 chr9 80005916 80005995 -37856632 + MIR SINE MIR 21 98 -110 259 300 92 25 chr9 80006385 80006505 -37856122 + L3 LINE CR1 1422 1549 -28 185 218 277 30 chr9 80006606 80006707 -37855920 + L2 LINE L2 3185 3310 -3 341 257 110 7 chr9 80006904 80007040 -37855587 + MER103 DNA DNA 17 166 0 281 285 38 49 chr9 80008454 80008721 -37853906 + L1ME LINE L1 5087 5350 -796 513 242 77 41 chr9 80008734 80008928 -37853699 - MER63A DNA MER1_type 0 210 10 502 309 97 20 chr9 80008938 80009353 -37853274 + L1ME LINE L1 5355 5653 -468 268 296 218 34 chr9 80009374 80009553 -37853074 - MIR SINE MIR -19 243 32 3404 130 56 0 chr9 80009554 80010055 -37852572 + MER1A DNA MER1_type 1 529 0 2038 130 24 0 chr9 80010537 80010830 -37851797 - AluSx SINE Alu -12 300 1 766 196 83 0 chr9 80011818 80011986 -37850641 + MER3 DNA MER1_type 24 205 -4 242 212 20 71 chr9 80012215 80012314 -37850313 - L1MC/D LINE L1 -1889 5919 5826 341 222 167 0 chr9 80012821 80012911 -37849716 - L2 LINE L2 -4 3309 3205 * 566 228 89 56 chr9 80012907 80013087 -37849540 - L2 LINE L2 -910 2404 2219 182 257 20 99 chr9 80013152 80013253 -37849374 - L2 LINE L2 -2641 673 581 1110 301 80 43 chr9 80013405 80013943 -37848684 - L2 LINE L2 -2728 586 29 296 340 170 0 chr9 80014547 80014688 -37847939 - MER117 DNA MER1_type -1 196 32 309 275 128 0 chr9 80017295 80017404 -37845223 + MLT1H LTR MaLR 408 530 -19 675 222 199 18 chr9 80017458 80017679 -37844948 + MIR SINE MIR 1 261 -1 507 78 0 0 chr9 80017963 80018040 -37844587 + (TA)n Simple_repeat Simple_repeat 1 77 0 284 369 95 11 chr9 80018296 80018475 -37844152 - MIR3 SINE MIR -3 205 12 24 0 0 0 chr9 80018716 80018740 -37843887 + AT_rich Low_complexity Low_complexity 1 24 0 232 303 13 0 chr9 80018755 80018831 -37843796 - L1ME LINE L1 -286 5884 5808 521 266 143 30 chr9 80018845 80019361 -37843266 - L1ME LINE L1 -440 5726 5150 951 328 60 90 chr9 80019895 80021343 -37841284 + L2 LINE L2 1862 3264 -8 331 339 135 16 chr9 80021348 80021593 -37841034 + L3 LINE CR1 931 1204 -373 448 236 135 120 chr9 80021689 80022160 -37840467 + MLT1G1 LTR MaLR 3 492 -63 301 302 47 0 chr9 80022309 80022395 -37840232 + LTR16A LTR ERVL 25 114 -336 1461 131 41 0 chr9 80022552 80022773 -37839854 - MER30 DNA MER1_type 0 230 1 237 282 94 26 chr9 80022863 80022980 -37839647 + LTR16B LTR ERVL 327 451 -13 4515 168 62 29 chr9 80023568 80024571 -37838056 + L1MA5 LINE L1 4524 5493 -807 895 137 77 0 chr9 80024571 80024739 -37837888 - L1PA16 LINE L1 -6 6160 5980 4515 168 62 29 chr9 80024739 80025011 -37837616 + L1MA5 LINE L1 5493 5755 -545 225 0 0 0 chr9 80025011 80025036 -37837591 + (CA)n Simple_repeat Simple_repeat 1 25 0 4515 168 62 29 chr9 80025036 80025304 -37837323 + L1MA5 LINE L1 5755 6112 -188 1124 182 0 0 chr9 80025307 80025499 -37837128 - L1PB4 LINE L1 -4 6152 5961 236 371 69 35 chr9 80025723 80025839 -37836788 + MIR SINE MIR 53 172 -90 234 91 0 0 chr9 80026846 80026879 -37835748 + (TG)n Simple_repeat Simple_repeat 2 34 0 413 266 97 19 chr9 80027021 80027175 -37835452 - MIR SINE MIR -92 170 5 297 243 0 63 chr9 80028041 80028152 -37834475 + GA-rich Low_complexity Low_complexity 1 104 0 417 259 95 49 chr9 80029484 80029789 -37832838 + L1ME3 LINE L1 696 1014 -5191 343 291 78 17 chr9 80029813 80029992 -37832635 + L1ME3 LINE L1 1248 1437 -4959 2930 115 15 12 chr9 80030019 80030520 -37832107 + MER4B LTR ERV1 99 779 0 34 42 0 0 chr9 80030778 80030826 -37831801 + AT_rich Low_complexity Low_complexity 1 48 0 599 296 42 30 chr9 80030920 80031255 -37831372 + L1ME3 LINE L1 4100 4438 -1777 332 311 124 35 chr9 80031258 80031541 -37831086 + L1ME3 LINE L1 5691 5998 -233 28 0 0 0 chr9 80033642 80033670 -37828957 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr9 80033901 80033925 -37828702 + AT_rich Low_complexity Low_complexity 1 24 0 3105 204 43 41 chr9 80035863 80036844 -37825783 - L1MB8 LINE L1 -17 6161 5188 751 151 66 0 chr9 80036863 80037015 -37825612 - L1MB5 LINE L1 -8 6166 6005 2283 147 80 17 chr9 80037022 80037485 -37825142 - L1MA7 LINE L1 -7 6284 5793 3095 222 56 55 chr9 80037485 80038256 -37824371 - L1MA6 LINE L1 -8 6292 5102 906 145 59 0 chr9 80038256 80038442 -37824185 + L1MA5 LINE L1 6099 6295 -5 216 0 0 0 chr9 80038496 80038520 -37824107 + (TG)n Simple_repeat Simple_repeat 1 24 0 388 305 96 86 chr9 80038647 80038939 -37823688 + L3 LINE CR1 1211 1505 -72 21 0 0 0 chr9 80039136 80039157 -37823470 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 80041211 80041233 -37821394 + AT_rich Low_complexity Low_complexity 1 22 0 608 238 107 11 chr9 80041884 80042201 -37820426 - MSTC LTR MaLR 0 396 1 397 236 19 28 chr9 80042846 80042952 -37819675 - MIR SINE MIR -113 149 45 321 252 144 45 chr9 80043050 80043161 -37819466 + MIR3 SINE MIR 12 133 -75 322 291 70 0 chr9 80044508 80044594 -37818033 + MIR SINE MIR 20 111 -151 25 0 0 0 chr9 80044774 80044799 -37817828 + AT_rich Low_complexity Low_complexity 1 25 0 28 29 0 0 chr9 80046065 80046100 -37816527 + AT_rich Low_complexity Low_complexity 1 35 0 2076 125 0 7 chr9 80047605 80047893 -37814734 + AluSx SINE Alu 10 295 -17 1720 104 41 11 chr9 80048081 80048406 -37814221 + L1P4 LINE L1 5198 5539 -629 1872 170 6 9 chr9 80048938 80049274 -37813353 + MLT1A1 LTR MaLR 31 365 0 545 322 6 23 chr9 80049629 80049803 -37812824 + MIR3 SINE MIR 21 191 -17 1227 138 0 9 chr9 80050664 80050874 -37811753 - MER6 DNA MER2_type -32 833 626 1233 181 81 4 chr9 80050927 80051187 -37811440 - MER6 DNA MER2_type -585 280 1 1789 137 60 35 chr9 80052037 80052403 -37810224 - THE1C LTR MaLR 0 375 1 1466 191 3 67 chr9 80052540 80052855 -37809772 - AluJo SINE Alu -17 295 1 482 324 102 5 chr9 80054130 80054346 -37808281 + MIR SINE MIR 20 256 -6 1086 170 5 0 chr9 80054601 80054795 -37807832 + L1PB1 LINE L1 5957 6151 0 462 338 82 18 chr9 80054911 80055192 -37807435 + MLT1K LTR MaLR 11 309 -279 341 266 186 0 chr9 80055458 80055582 -37807045 + MIR SINE MIR 59 205 -57 955 180 113 0 chr9 80055656 80055850 -37806777 + MER20 DNA MER1_type 2 217 -2 186 103 0 0 chr9 80057246 80057275 -37805352 + (TAA)n Simple_repeat Simple_repeat 1 29 0 482 235 78 39 chr9 80057283 80057436 -37805191 - MIR SINE MIR -18 244 86 257 258 34 0 chr9 80057844 80057933 -37804694 - L1MC/D LINE L1 -2121 5687 5596 836 218 36 12 chr9 80058172 80058337 -37804290 + MER58A DNA MER1_type 2 170 -54 496 252 0 0 chr9 80058340 80058455 -37804172 - MER45A DNA AcHobo -1 177 63 355 180 0 0 chr9 80058479 80058540 -37804087 + MER58A DNA MER1_type 164 224 0 843 190 110 25 chr9 80059002 80059202 -37803425 + MER20 DNA MER1_type 1 217 -2 3809 144 7 64 chr9 80059347 80060332 -37802295 + L1MA4 LINE L1 5136 6065 -235 863 75 83 0 chr9 80060335 80060455 -37802172 + AluSg SINE Alu 1 130 -180 2175 125 0 10 chr9 80060585 80060889 -37801738 - AluSx SINE Alu -11 301 1 186 133 0 0 chr9 80061184 80061214 -37801413 + (TG)n Simple_repeat Simple_repeat 2 31 0 638 309 22 17 chr9 80062479 80062657 -37799970 + MIR SINE MIR 35 213 -49 2113 134 0 0 chr9 80063247 80063546 -37799081 + AluSx SINE Alu 1 299 -13 276 87 0 0 chr9 80063546 80063594 -37799033 + L1M1 LINE L1 5717 5764 -533 719 292 88 18 chr9 80063605 80063831 -37798796 + MIR SINE MIR 20 261 -1 441 189 75 9 chr9 80064082 80064188 -37798439 - MER90 LTR ERV1 -4 610 498 907 194 57 1 chr9 80064194 80064432 -37798195 - MER90 LTR ERV1 -320 294 6 1736 63 0 0 chr9 80064564 80064770 -37797857 + AluY SINE Alu 1 206 -105 10645 64 0 7 chr9 80064870 80066303 -37796324 - L1P LINE L1 -4717 1429 7 391 249 55 36 chr9 80066475 80066640 -37795987 - L1ME LINE L1 -446 5675 5508 212 255 79 42 chr9 80068380 80068489 -37794138 + MIR SINE MIR 35 149 -59 1833 172 0 3 chr9 80068775 80069072 -37793555 + AluJb SINE Alu 1 296 -16 671 305 94 5 chr9 80069423 80069646 -37792981 - MIR SINE MIR -18 244 2 399 72 93 21 chr9 80120603 80120842 -37741785 + (TA)n Simple_repeat Simple_repeat 1 256 0 494 180 107 9 chr9 80120851 80121029 -37741598 + MER31-int LTR ERV1 2882 4416 -1898 * 1922 239 80 35 chr9 80121025 80121803 -37740824 + MER31-int LTR ERV1 4290 5102 -1229 258 281 12 49 chr9 80121811 80121893 -37740734 + MER31-int LTR ERV1 3884 3962 -974 545 252 0 34 chr9 80121988 80122135 -37740492 + MER31-int LTR ERV1 4270 4411 -525 * 1250 269 87 0 chr9 80122133 80122468 -37740159 + MER31-int LTR ERV1 3769 4132 -739 339 200 35 0 chr9 80122481 80122566 -37740061 - L1MA5 LINE L1 -10 6290 6203 276 279 38 0 chr9 80122566 80122645 -37739982 + L1ME LINE L1 385 466 -5604 2477 64 0 3 chr9 80122717 80123014 -37739613 - AluSc SINE Alu -13 296 1 405 228 55 50 chr9 80123282 80123484 -37739143 + L1ME LINE L1 457 659 -5411 1124 203 94 116 chr9 80123490 80123541 -37739086 + L1ME LINE L1 2253 2304 -3776 1949 73 8 0 chr9 80123541 80123787 -37738840 + AluY SINE Alu 46 293 -18 1124 203 94 116 chr9 80123787 80124138 -37738489 + L1ME LINE L1 2304 2638 -3442 324 0 0 0 chr9 80124138 80124174 -37738453 + (TA)n Simple_repeat Simple_repeat 2 37 0 1124 203 94 116 chr9 80124174 80124406 -37738221 + L1ME LINE L1 2638 2874 -3206 1850 334 51 19 chr9 80124406 80125497 -37737130 + ERVL LTR ERVL 4075 5242 -522 2135 120 0 0 chr9 80125497 80125813 -37736814 + AluSx SINE Alu 1 316 0 263 337 41 0 chr9 80125875 80125973 -37736654 + ERVL LTR ERVL 5234 5335 -150 1296 279 89 23 chr9 80126192 80126619 -37736008 + LTR33 LTR ERVL 3 457 -64 466 231 301 20 chr9 80126787 80126990 -37735637 + MIR SINE MIR 3 262 0 * 640 231 59 32 chr9 80126988 80127117 -37735510 + L2 LINE L2 3123 3260 -53 1222 180 10 0 chr9 80127117 80127323 -37735304 + MER3 DNA MER1_type 2 209 0 640 231 59 32 chr9 80127323 80127379 -37735248 + L2 LINE L2 3260 3313 0 582 263 77 24 chr9 80127376 80127585 -37735042 - MIR SINE MIR 0 262 43 * 1186 200 85 4 chr9 80128018 80128278 -37734349 - MER58B DNA MER1_type -31 310 30 387 281 57 2 chr9 80130317 80130492 -37732135 - L1MC/D LINE L1 -719 5447 5265 459 200 10 33 chr9 80130608 80130718 -37731909 + L1ME1 LINE L1 6067 6162 -4 1294 201 103 62 chr9 80131180 80131538 -37731089 - MLT1A2 LTR MaLR -1 373 1 260 212 26 18 chr9 80131668 80131781 -37730846 + CT-rich Low_complexity Low_complexity 4 117 0 421 280 42 63 chr9 80131798 80131987 -37730640 - L1MC/D LINE L1 -2081 5727 5543 288 186 49 20 chr9 80132286 80132388 -37730239 + (TA)n Simple_repeat Simple_repeat 2 106 0 435 253 296 0 chr9 80132474 80132660 -37729967 + MIR SINE MIR 2 242 -20 206 214 71 0 chr9 80132629 80132671 -37729956 + L2 LINE L2 3254 3298 -15 * 184 195 24 0 chr9 80132722 80132763 -37729864 - MIR SINE MIR -66 142 101 198 286 83 48 chr9 80132769 80132853 -37729774 - L2 LINE L2 -2 3270 3184 267 324 77 35 chr9 80133297 80133467 -37729160 - L2 LINE L2 -458 2856 2680 2034 97 4 0 chr9 80133549 80133818 -37728809 - AluSc SINE Alu -37 272 3 221 290 66 67 chr9 80133821 80133982 -37728645 - MIR3 SINE MIR -67 141 1 1799 156 0 3 chr9 80134775 80135091 -37727536 - AluJb SINE Alu 0 315 1 1025 276 26 39 chr9 80135448 80135600 -37727027 + MLT1I LTR MaLR 79 226 -183 198 0 0 0 chr9 80135600 80135622 -37727005 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1025 276 26 39 chr9 80135622 80135777 -37726850 + MLT1I LTR MaLR 226 382 -27 463 239 122 127 chr9 80137206 80137607 -37725020 - MLT1J2 LTR MaLR -9 441 43 560 264 109 6 chr9 80137961 80138135 -37724492 - MIR SINE MIR -67 195 4 249 57 0 0 chr9 80138883 80138918 -37723709 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 736 281 35 31 chr9 80141134 80141362 -37721265 + MIR SINE MIR 20 248 -14 393 329 22 7 chr9 80141876 80142013 -37720614 - MIR3 SINE MIR -61 147 9 208 152 0 0 chr9 80143521 80143554 -37719073 + L2 LINE L2 2935 2967 -346 758 300 96 34 chr9 80143726 80144243 -37718384 - L2 LINE L2 -19 3294 2748 216 0 0 0 chr9 80144778 80144802 -37717825 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 227 263 0 18 chr9 80145171 80145228 -37717399 - MER5B DNA MER1_type -80 98 43 367 179 146 16 chr9 80145720 80145843 -37716784 - L1ME4a LINE L1 -3 6118 5980 271 172 152 55 chr9 80145897 80146042 -37716585 - L1ME4a LINE L1 -245 5876 5718 304 293 58 17 chr9 80146408 80146582 -37716045 - L1MC4 LINE L1 -254 7788 7608 472 251 73 11 chr9 80146593 80146772 -37715855 - L1M4 LINE L1 -2734 3412 3223 1074 208 194 35 chr9 80146775 80147266 -37715361 - L1M4 LINE L1 -3159 2987 2419 4630 115 26 46 chr9 80147340 80148479 -37714148 + MER11A LTR ERVK 1 1066 -5 740 288 69 4 chr9 80148653 80149086 -37713541 - L1ME3A LINE L1 -274 5896 5266 604 186 0 0 chr9 80150576 80150673 -37711954 - MER50 LTR ERV1 0 734 638 408 304 14 36 chr9 80151698 80151836 -37710791 - L2 LINE L2 -5 3267 3133 615 280 130 74 chr9 80152991 80153544 -37709083 - MLT1L LTR MaLR -8 607 24 269 224 0 0 chr9 80154794 80154843 -37707784 - MLT1J1 LTR MaLR -52 394 346 219 69 0 0 chr9 80155290 80155319 -37707308 + (TG)n Simple_repeat Simple_repeat 2 30 0 27 0 0 0 chr9 80155336 80155363 -37707264 + AT_rich Low_complexity Low_complexity 1 27 0 378 0 0 0 chr9 80155393 80155435 -37707192 + (TA)n Simple_repeat Simple_repeat 2 43 0 189 260 164 14 chr9 80155501 80155574 -37707053 + L2 LINE L2 3189 3272 0 291 219 57 57 chr9 80157524 80157629 -37704998 + LTR45B LTR ERV1 314 418 -71 1188 105 0 35 chr9 80157629 80157801 -37704826 + AluSq SINE Alu 1 166 -147 1728 218 34 44 chr9 80157932 80158421 -37704206 + L1ME1 LINE L1 5695 6334 0 1234 220 91 76 chr9 80159173 80159369 -37703258 - L2 LINE L2 0 3313 3121 2284 107 0 0 chr9 80159369 80159667 -37702960 + AluSx SINE Alu 6 303 -9 1234 220 91 76 chr9 80159667 80160046 -37702581 - L2 LINE L2 -192 3121 2740 2768 10 0 0 chr9 80160854 80161154 -37701473 + AluYa5 SINE Alu 1 300 -11 831 141 55 37 chr9 80161339 80161502 -37701125 + FRAM SINE Alu 1 165 -11 242 324 81 36 chr9 80162239 80162350 -37700277 + L2 LINE L2 3156 3271 -1 316 299 76 43 chr9 80162480 80162664 -37699963 - MIR SINE MIR -51 211 22 603 221 117 0 chr9 80162873 80163027 -37699600 - MER5B DNA MER1_type -6 172 1 2287 96 0 3 chr9 80163073 80163364 -37699263 + AluSx SINE Alu 1 290 -22 240 148 49 66 chr9 80163369 80163430 -37699197 - L1ME4a LINE L1 -93 6028 5969 203 180 60 0 chr9 80163521 80163571 -37699056 + (TATG)n Simple_repeat Simple_repeat 2 54 0 198 71 0 0 chr9 80163631 80163659 -37698968 + (TAGA)n Simple_repeat Simple_repeat 2 29 0 218 211 0 19 chr9 80163787 80163839 -37698788 + GA-rich Low_complexity Low_complexity 3 53 0 296 259 302 11 chr9 80164309 80164498 -37698129 + MIR SINE MIR 13 256 -6 354 200 18 55 chr9 80164724 80164834 -37697793 - MLT1J LTR MaLR -15 496 391 4438 196 34 53 chr9 80164842 80165825 -37696802 + MER45B DNA AcHobo 1 964 -76 2230 114 3 0 chr9 80165932 80166240 -37696387 - AluSg SINE Alu 0 310 2 516 226 107 40 chr9 80166260 80166437 -37696190 - MLT1J LTR MaLR -322 189 1 581 269 49 62 chr9 80166449 80166600 -37696027 + L1ME4a LINE L1 5617 5768 -353 2736 139 30 10 chr9 80166600 80167002 -37695625 - LTR57 LTR ERVL 0 411 2 581 269 49 62 chr9 80167002 80167021 -37695606 + L1ME4a LINE L1 5768 5786 -335 195 42 0 0 chr9 80167021 80167045 -37695582 + (TA)n Simple_repeat Simple_repeat 2 25 0 581 269 49 62 chr9 80167045 80167178 -37695449 + L1ME4a LINE L1 5786 5917 -204 306 106 0 0 chr9 80167438 80167485 -37695142 + (TG)n Simple_repeat Simple_repeat 2 48 0 2211 135 79 20 chr9 80167485 80167826 -37694801 - THE1B LTR MaLR -3 361 1 12376 94 10 1 chr9 80167826 80169391 -37693236 - THE1B-int LTR MaLR 0 1580 1 2280 106 66 26 chr9 80169391 80169740 -37692887 - THE1B LTR MaLR 0 364 2 213 191 16 63 chr9 80169740 80169803 -37692824 + (TATATG)n Simple_repeat Simple_repeat 5 64 0 992 196 24 0 chr9 80170746 80170914 -37691713 + FAM SINE Alu 1 172 -3 719 226 258 16 chr9 80170942 80171260 -37691367 - Charlie2 DNA MER1_type -25 2837 2443 496 209 17 9 chr9 80171303 80171418 -37691209 + Charlie5 DNA MER1_type 1 116 -2496 830 117 12 25 chr9 80172308 80172471 -37690156 + (TTTTC)n Simple_repeat Simple_repeat 3 163 0 833 97 34 29 chr9 80172576 80172751 -37689876 + CT-rich Low_complexity Low_complexity 3 178 0 1661 118 8 16 chr9 80172804 80173070 -37689557 - AluJb SINE Alu 0 312 64 373 298 145 32 chr9 80173115 80173487 -37689140 + L1M4 LINE L1 4356 4769 -1377 190 191 16 16 chr9 80174034 80174097 -37688530 + (TA)n Simple_repeat Simple_repeat 2 64 0 2474 157 20 8 chr9 80174339 80174740 -37687887 + MSTB LTR MaLR 1 406 -20 2866 86 0 11 chr9 80174745 80175116 -37687511 + THE1C LTR MaLR 9 375 0 207 0 0 0 chr9 80176515 80176538 -37686089 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 22 66 0 16 chr9 80177085 80177120 -37685507 + AT_rich Low_complexity Low_complexity 1 36 -24 3073 194 9 2 chr9 80177120 80177681 -37684946 - L1MB7 LINE L1 -9 6175 5611 22 66 0 16 chr9 80177681 80177706 -37684921 + AT_rich Low_complexity Low_complexity 36 60 0 626 335 20 8 chr9 80178703 80178948 -37683679 - MIR SINE MIR -13 249 2 1620 132 89 0 chr9 80179365 80179789 -37682838 - AluSg SINE Alu 0 447 1 265 293 177 28 chr9 80179938 80180153 -37682474 + MIR SINE MIR 4 250 -12 288 130 0 0 chr9 80180225 80180271 -37682356 + (TG)n Simple_repeat Simple_repeat 1 46 0 244 305 59 57 chr9 80180339 80180523 -37682104 - MIR SINE MIR -46 216 36 476 168 11 21 chr9 80181285 80181380 -37681247 + L1MB8 LINE L1 6085 6178 0 3505 112 16 6 chr9 80181380 80181881 -37680746 + L1MB2 LINE L1 5652 6164 -7 261 286 152 9 chr9 80182133 80182238 -37680389 - L2 LINE L2 0 3272 3153 183 80 0 0 chr9 80182349 80182374 -37680253 + (CAA)n Simple_repeat Simple_repeat 3 27 0 339 311 61 0 chr9 80183103 80183235 -37679392 - MIR SINE MIR -43 219 80 201 74 0 0 chr9 80183302 80183329 -37679298 + (CAAAAA)n Simple_repeat Simple_repeat 5 31 0 390 283 124 6 chr9 80183729 80183906 -37678721 + MIR SINE MIR 65 262 0 22 56 0 0 chr9 80185204 80185240 -37677387 + AT_rich Low_complexity Low_complexity 1 36 0 513 253 40 53 chr9 80185506 80185656 -37676971 + MIR3 SINE MIR 50 197 -11 332 219 23 0 chr9 80187331 80187426 -37675201 + MIR3 SINE MIR 102 199 -9 1843 169 3 10 chr9 80187527 80187841 -37674786 + AluJo SINE Alu 1 312 0 297 222 54 31 chr9 80188530 80188648 -37673979 - MIR SINE MIR -78 130 33 387 279 71 30 chr9 80188822 80189019 -37673608 + MIR SINE MIR 58 262 0 194 233 82 27 chr9 80189072 80189145 -37673482 - MIR SINE MIR -103 159 83 339 229 48 48 chr9 80189541 80189646 -37672981 + MIR SINE MIR 63 167 -95 259 244 171 0 chr9 80192046 80192128 -37670499 + MIR SINE MIR 96 191 -71 1688 149 34 68 chr9 80192141 80192464 -37670163 + AluJo SINE Alu 1 312 0 348 248 92 53 chr9 80192632 80192798 -37669829 - MIR SINE MIR -61 147 25 286 293 85 0 chr9 80192803 80192885 -37669742 + L2 LINE L2 3168 3256 -16 579 278 99 5 chr9 80193227 80193418 -37669209 + MIR SINE MIR 25 233 -29 318 302 31 10 chr9 80193469 80193565 -37669062 + MIR SINE MIR 8 105 -157 394 295 0 0 chr9 80193613 80193718 -37668909 + MIR SINE MIR 50 154 -108 337 284 69 10 chr9 80195223 80195325 -37667302 + MIR SINE MIR 19 126 -82 305 250 83 33 chr9 80195462 80195582 -37667045 + MIR3 SINE MIR 82 207 -1 2165 124 0 13 chr9 80197138 80197464 -37665163 - AluSx SINE Alu 0 312 1 212 219 0 0 chr9 80198627 80198668 -37663959 - MER5A DNA MER1_type -2 187 147 1624 147 17 0 chr9 80198693 80198985 -37663642 - L1MA4 LINE L1 -5 6295 5999 681 228 47 7 chr9 80198985 80199134 -37663493 - MER5A DNA MER1_type -34 155 1 655 236 17 29 chr9 80200323 80200497 -37662130 + MER5B DNA MER1_type 5 176 -2 23 33 0 0 chr9 80200989 80201019 -37661608 + AT_rich Low_complexity Low_complexity 1 30 0 324 261 114 57 chr9 80201030 80201275 -37661352 + HAL1 LINE L1 2247 2505 -2 509 268 42 28 chr9 80201311 80201453 -37661174 - MIR3 SINE MIR -41 167 24 312 271 31 10 chr9 80202430 80202526 -37660101 + GA-rich Low_complexity Low_complexity 4 101 0 274 258 134 21 chr9 80202875 80202972 -37659655 - MIR SINE MIR -71 137 29 801 233 58 19 chr9 80202998 80203179 -37659448 + MIR SINE MIR 18 209 -53 1137 183 176 7 chr9 80203179 80203468 -37659159 + MER46C DNA MER2_type 1 338 0 801 233 58 19 chr9 80203468 80203492 -37659135 + MIR SINE MIR 209 231 -31 193 213 21 21 chr9 80203746 80203793 -37658834 - L2 LINE L2 -6 3307 3261 343 194 60 0 chr9 80203970 80204037 -37658590 + MIR SINE MIR 74 144 -118 182 250 50 0 chr9 80204364 80204424 -37658203 - L2 LINE L2 -644 2670 2608 7152 40 11 8 chr9 80204671 80205679 -37656948 + L1PA5 LINE L1 5144 6154 0 21 0 0 0 chr9 80206190 80206211 -37656416 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr9 80206791 80206816 -37655811 + AT_rich Low_complexity Low_complexity 1 25 0 189 0 0 0 chr9 80207377 80207398 -37655229 + (T)n Simple_repeat Simple_repeat 1 21 0 529 301 233 18 chr9 80207555 80208213 -37654414 + L2 LINE L2 1833 2631 -683 344 269 74 7 chr9 80208436 80208585 -37654042 + L1ME3A LINE L1 6006 6164 -6 2488 78 3 0 chr9 80208908 80209215 -37653412 - AluSp SINE Alu -4 309 2 4585 83 0 21 chr9 80209244 80209945 -37652682 + L1P LINE L1 4546 5231 -915 556 146 0 0 chr9 80209952 80210048 -37652579 + L1PA11 LINE L1 6074 6169 -5 1788 164 16 44 chr9 80213907 80214225 -37648402 + AluJb SINE Alu 1 309 -3 467 299 53 63 chr9 80215207 80215352 -37647275 + L2 LINE L2 1788 1933 -1381 1985 90 83 7 chr9 80215352 80215630 -37646997 - AluSq SINE Alu -14 299 1 467 299 53 63 chr9 80215630 80215802 -37646825 + L2 LINE L2 1933 2102 -1212 200 254 17 0 chr9 80216569 80216628 -37645999 + L2 LINE L2 3158 3217 -96 322 276 143 20 chr9 80216855 80217051 -37645576 + L1M4 LINE L1 4384 4603 -1543 1129 158 22 84 chr9 80217534 80217807 -37644820 + MLT1A2 LTR MaLR 1 256 -118 193 339 0 0 chr9 80217807 80217866 -37644761 - L2 LINE L2 -2571 743 685 243 0 0 0 chr9 80218298 80218325 -37644302 + (CA)n Simple_repeat Simple_repeat 2 28 0 224 386 136 19 chr9 80218333 80218597 -37644030 - L2 LINE L2 -426 2888 2594 271 308 120 26 chr9 80218614 80218731 -37643896 - L2 LINE L2 0 3272 3145 924 228 46 18 chr9 80218957 80219176 -37643451 - MIR SINE MIR -4 258 34 2079 129 0 3 chr9 80219208 80219502 -37643125 + AluSx SINE Alu 1 293 -19 209 361 67 32 chr9 80219604 80219889 -37642738 - L2 LINE L2 -1322 1992 1698 203 244 0 0 chr9 80220535 80220576 -37642051 + L2 LINE L2 3198 3238 -75 299 325 206 32 chr9 80220618 80221234 -37641393 - L2 LINE L2 -2440 874 152 240 214 286 0 chr9 80223340 80223424 -37639203 - L2 LINE L2 0 3313 3206 622 207 16 8 chr9 80223438 80223559 -37639068 - MIR SINE MIR -71 137 16 687 273 65 14 chr9 80223792 80224008 -37638619 - L2 LINE L2 0 3313 3087 2884 144 81 109 chr9 80224029 80224116 -37638511 - L1MA9 LINE L1 -33 6279 6191 816 158 0 15 chr9 80224116 80224249 -37638378 - FLAM_C SINE Alu -2 131 1 2884 144 81 109 chr9 80224249 80224468 -37638159 - L1MA9 LINE L1 -121 6191 5967 2354 84 0 0 chr9 80224468 80224766 -37637861 - AluSc SINE Alu -11 298 1 2884 144 81 109 chr9 80224766 80225335 -37637292 - L1MA9 LINE L1 -345 5967 5428 * 5108 142 26 33 chr9 80225332 80226620 -37636007 - L1MA4 LINE L1 0 6300 5024 731 208 13 0 chr9 80226589 80226748 -37635879 - L1MA9 LINE L1 -962 5184 5024 * 2788 186 27 53 chr9 80226748 80227421 -37635206 - LTR8 LTR ERV1 0 691 37 9575 165 33 69 chr9 80227426 80229957 -37632670 - L1MA9 LINE L1 -1439 4707 2268 271 277 116 53 chr9 80231686 80231989 -37630638 - MARNA DNA Mariner -206 380 59 * 296 252 72 29 chr9 80231872 80232011 -37630616 + MARNA DNA Mariner 405 549 -37 920 174 16 11 chr9 80232113 80232303 -37630324 + MER2 DNA MER2_type 16 206 -139 843 132 44 13 chr9 80232532 80232691 -37629936 + MER2 DNA MER2_type 165 328 -17 193 213 21 21 chr9 80233323 80233370 -37629257 - L2 LINE L2 -6 3307 3261 343 194 60 0 chr9 80233547 80233614 -37629013 + MIR SINE MIR 74 144 -118 205 233 50 0 chr9 80233941 80234001 -37628626 - L2 LINE L2 -644 2670 2608 7200 38 11 7 chr9 80234250 80235257 -37627370 + L1PA5 LINE L1 5144 6154 0 21 0 0 0 chr9 80235768 80235789 -37626838 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr9 80236367 80236391 -37626236 + AT_rich Low_complexity Low_complexity 1 24 0 529 301 233 18 chr9 80237127 80237785 -37624842 + L2 LINE L2 1833 2631 -683 344 269 74 7 chr9 80238008 80238157 -37624470 + L1ME3A LINE L1 6006 6164 -6 2454 84 3 0 chr9 80238480 80238788 -37623839 - AluSp SINE Alu -4 309 1 201 333 0 18 chr9 80239228 80239285 -37623342 - MER5B DNA MER1_type -73 105 50 1705 192 44 10 chr9 80240128 80240219 -37622408 + MLT2D LTR ERVL 1 87 -310 255 31 0 0 chr9 80240219 80240251 -37622376 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1705 192 44 10 chr9 80240251 80240529 -37622098 + MLT2D LTR ERVL 87 362 -35 405 0 0 0 chr9 80240529 80240574 -37622053 + (CA)n Simple_repeat Simple_repeat 2 46 0 1705 192 44 10 chr9 80240574 80240605 -37622022 + MLT2D LTR ERVL 362 390 -7 2158 141 0 3 chr9 80241322 80241634 -37620993 + AluSx SINE Alu 2 312 0 375 257 29 21 chr9 80241634 80241774 -37620853 - Charlie8 DNA MER1_type -2191 226 86 188 256 0 0 chr9 80242649 80242688 -37619939 + MER5B DNA MER1_type 139 177 -1 912 133 87 0 chr9 80242891 80243064 -37619563 - MER50 LTR ERV1 -546 188 1 358 208 138 53 chr9 80243469 80243566 -37619061 - L1MEc LINE L1 -3848 2367 2280 1741 168 0 46 chr9 80243566 80243893 -37618734 - AluJo SINE Alu 0 312 1 358 208 138 53 chr9 80243893 80243997 -37618630 - L1MEc LINE L1 -3935 2280 2177 222 204 0 20 chr9 80244044 80244076 -37618551 + (CA)n Simple_repeat Simple_repeat 2 34 -15 2225 101 3 14 chr9 80244076 80244373 -37618254 + AluSx SINE Alu 1 294 -18 222 204 0 20 chr9 80244373 80244389 -37618238 + (CA)n Simple_repeat Simple_repeat 34 49 0 570 249 75 47 chr9 80244409 80244622 -37618005 + MLT1G1 LTR MaLR 60 278 -317 1483 141 49 4 chr9 80244636 80245012 -37617615 - LTR47A LTR ERVL -9 443 1 2354 152 47 51 chr9 80245029 80245833 -37616794 - MER65A-int LTR ERV1 -632 5699 5228 677 59 0 0 chr9 80245833 80245918 -37616709 + AluS SINE Alu 2 86 -226 9401 89 16 2 chr9 80245925 80247583 -37615044 - L1P3 LINE L1 -536 5618 3934 1928 156 8 28 chr9 80247583 80247942 -37614685 - MER65A-int LTR ERV1 -2174 4584 4233 751 152 31 31 chr9 80247940 80248131 -37614496 - MER65A-int LTR ERV1 -3743 4377 4187 * 606 71 8 134 chr9 80248134 80248261 -37614366 + L1P4 LINE L1 5647 5757 -404 1809 187 73 47 chr9 80248937 80249487 -37613140 - MER65A-int LTR ERV1 -2899 1972 1409 1061 218 13 50 chr9 80249583 80249900 -37612727 - MER65A-int LTR ERV1 -3685 1186 882 272 106 21 0 chr9 80249917 80249964 -37612663 - LTR57-int LTR ERVL -4986 357 310 * 810 228 87 77 chr9 80249924 80250572 -37612055 - MER65A-int LTR ERV1 -4097 774 54 2399 157 39 9 chr9 80250624 80251056 -37611571 - MER65A LTR ERV1 0 445 1 1104 230 3 26 chr9 80251081 80251390 -37611237 - L1MC4 LINE L1 -153 7889 7588 1758 221 82 29 chr9 80251391 80251867 -37610760 - MLT1D LTR MaLR -2 503 3 449 271 72 72 chr9 80254402 80254623 -37608004 + MLT1J LTR MaLR 248 468 -43 21 0 0 0 chr9 80254756 80254777 -37607850 + AT_rich Low_complexity Low_complexity 1 21 0 1512 137 80 160 chr9 80255137 80255676 -37606951 + LTR54B LTR ERV1 1 496 -2 454 271 60 13 chr9 80255794 80256106 -37606521 + MER4-int LTR ERV1 318 2245 -4086 481 339 84 32 chr9 80258307 80258746 -37603881 + MER4-int LTR ERV1 2538 2999 -3802 287 338 0 0 chr9 80259570 80259644 -37602983 + MER4-int LTR ERV1 3796 3869 -2932 9457 96 18 42 chr9 80259846 80261337 -37601290 - Charlie3 DNA MER1_type -4 2706 1251 18070 98 12 24 chr9 80261992 80264707 -37597920 - Charlie3 DNA MER1_type -4 2706 26 1026 218 73 8 chr9 80265277 80265511 -37597116 + MER4-int LTR ERV1 6892 7140 -397 2099 126 98 59 chr9 80265513 80265990 -37596637 + LTR54B LTR ERV1 1 496 -2 192 77 0 0 chr9 80266070 80266096 -37596531 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2603 184 22 138 chr9 80267023 80267605 -37595022 - MLT2B3 LTR ERVL 0 515 1 258 161 0 32 chr9 80267902 80267964 -37594663 + MER4-int LTR ERV1 1111 1170 -5428 1349 199 133 18 chr9 80268429 80268821 -37593806 - MLT1D LTR MaLR 0 505 69 245 246 14 0 chr9 80268822 80268891 -37593736 + L1M4c LINE L1 1580 1649 -4735 1081 157 88 4 chr9 80268919 80269180 -37593447 - Tigger6b DNA MER2_type -1 1596 1314 1146 169 58 0 chr9 80269205 80269465 -37593162 + L1MA7 LINE L1 6013 6287 -4 250 136 85 0 chr9 80269471 80269530 -37593097 - Tigger6b DNA MER2_type -264 1333 1270 4435 170 59 10 chr9 80269580 80270545 -37592082 - Tigger6b DNA MER2_type -585 1012 1 2557 136 18 5 chr9 80271279 80271675 -37590952 - L1PA16 LINE L1 -9 6157 5757 13252 168 29 34 chr9 80271682 80272537 -37590090 - L1PB1 LINE L1 -8 6859 6002 1901 142 0 3 chr9 80272537 80272849 -37589778 - AluSx SINE Alu 0 311 1 13252 168 29 34 chr9 80272849 80277569 -37585058 - L1PB1 LINE L1 -865 6002 1339 2111 245 96 14 chr9 80277575 80278378 -37584249 - L1PB1 LINE L1 -5987 876 8 1253 114 10 0 chr9 80278393 80278594 -37584033 - L1P4 LINE L1 -399 5767 5565 2136 102 31 3 chr9 80278818 80279112 -37583515 + AluSq SINE Alu 4 305 -8 257 269 21 28 chr9 80279300 80279441 -37583186 - L1ME LINE L1 -404 5717 5578 2023 141 3 10 chr9 80279826 80280139 -37582488 - AluSx SINE Alu -1 311 1 21 71 0 0 chr9 80281038 80281080 -37581547 + AT_rich Low_complexity Low_complexity 1 42 0 210 343 50 10 chr9 80281514 80281613 -37581014 + L2 LINE L2 198 300 -3014 2096 83 57 26 chr9 80282185 80282534 -37580093 - L1PA13 LINE L1 -3 6160 5801 2457 80 3 0 chr9 80282544 80282845 -37579782 - AluSq SINE Alu -11 302 1 201 333 0 18 chr9 80283285 80283342 -37579285 - MER5B DNA MER1_type -73 105 50 1705 192 44 10 chr9 80284185 80284276 -37578351 + MLT2D LTR ERVL 1 87 -310 255 31 0 0 chr9 80284276 80284308 -37578319 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1705 192 44 10 chr9 80284308 80284586 -37578041 + MLT2D LTR ERVL 87 362 -35 405 0 0 0 chr9 80284586 80284631 -37577996 + (CA)n Simple_repeat Simple_repeat 2 46 0 1705 192 44 10 chr9 80284631 80284662 -37577965 + MLT2D LTR ERVL 362 390 -7 2206 138 0 0 chr9 80285379 80285690 -37576937 + AluSx SINE Alu 2 312 0 375 257 29 21 chr9 80285690 80285830 -37576797 - Charlie8 DNA MER1_type -2202 215 75 188 256 0 0 chr9 80286705 80286744 -37575883 + MER5B DNA MER1_type 139 177 -1 273 316 32 0 chr9 80287725 80287820 -37574807 - MIR SINE MIR -66 142 45 349 311 33 26 chr9 80287906 80288057 -37574570 - MIR SINE MIR -19 243 92 2499 53 0 0 chr9 80288296 80288597 -37574030 - AluY SINE Alu -10 301 1 21 0 0 0 chr9 80288617 80288638 -37573989 + AT_rich Low_complexity Low_complexity 1 21 0 638 284 83 0 chr9 80289295 80289513 -37573114 + MIR SINE MIR 15 250 -12 227 328 0 17 chr9 80289537 80289595 -37573032 - L2 LINE L2 -60 3212 3156 268 263 26 53 chr9 80289975 80290051 -37572576 - L2 LINE L2 0 3313 3240 268 307 13 0 chr9 80290170 80290245 -37572382 - L2 LINE L2 -536 2778 2703 1542 255 166 52 chr9 80290588 80291361 -37571266 - L2 LINE L2 -684 2630 1770 2495 237 86 4 chr9 80291361 80292058 -37570569 - L2 LINE L2 -2256 1058 305 855 324 95 39 chr9 80292419 80293313 -37569314 - L2 LINE L2 -1826 1488 545 1556 181 40 10 chr9 80294458 80294756 -37567871 - AluJo SINE Alu -3 309 3 23 0 0 0 chr9 80294758 80294781 -37567846 + AT_rich Low_complexity Low_complexity 1 23 0 22 56 0 0 chr9 80295031 80295067 -37567560 + AT_rich Low_complexity Low_complexity 1 36 0 252 326 47 0 chr9 80295854 80295940 -37566687 + L2 LINE L2 3183 3272 0 188 372 64 0 chr9 80297077 80297171 -37565456 - L2 LINE L2 -1 3271 3172 442 295 29 52 chr9 80297171 80297344 -37565283 - MER5B DNA MER1_type -6 172 4 559 208 9 0 chr9 80297676 80297782 -37564845 - FLAM_C SINE Alu -36 107 1 2404 80 0 3 chr9 80297814 80298113 -37564514 + AluSx SINE Alu 1 298 -14 345 341 24 8 chr9 80298847 80298970 -37563657 - MIR SINE MIR -118 144 20 820 274 126 22 chr9 80299273 80299587 -37563040 - MLT1H1 LTR MaLR -210 385 1 2624 166 68 2 chr9 80301004 80301517 -37561110 + L1 LINE L1 3912 4458 -1688 186 143 0 0 chr9 80301533 80301568 -37561059 + (TG)n Simple_repeat Simple_repeat 1 35 0 2634 128 54 0 chr9 80301568 80302014 -37560613 + L1MA9 LINE L1 5838 6307 -5 7986 50 22 2 chr9 80302421 80303408 -37559219 - LTR13 LTR ERVK 0 1007 1 321 381 79 48 chr9 80304261 80304615 -37558012 - L2 LINE L2 -2 3270 2906 273 172 32 21 chr9 80305937 80306030 -37556597 + GA-rich Low_complexity Low_complexity 4 97 0 356 256 0 83 chr9 80306995 80307128 -37555499 - MER5A DNA MER1_type -23 166 45 2256 83 3 23 chr9 80309060 80309362 -37553265 + AluSp SINE Alu 1 296 -17 392 319 106 42 chr9 80309466 80309986 -37552641 + L1MC/D LINE L1 4497 5049 -1097 667 251 55 23 chr9 80310052 80310407 -37552220 + L1MC/D LINE L1 5127 5487 -749 233 256 116 25 chr9 80311031 80311152 -37551475 + L1MC/D LINE L1 5659 5790 -2018 2229 96 11 56 chr9 80311408 80311785 -37550842 - L1PB1 LINE L1 0 6151 5792 4311 169 13 4 chr9 80311790 80313074 -37549553 - L1PB1 LINE L1 -490 5661 4366 770 209 60 0 chr9 80313208 80313423 -37549204 + L1MA9 LINE L1 6060 6287 -25 371 314 94 25 chr9 80313547 80313706 -37548921 - MIR3 SINE MIR -3 205 36 4364 137 22 37 chr9 80314135 80314938 -37547689 - L1MA4 LINE L1 -5 6499 5709 188 86 100 0 chr9 80314945 80315015 -37547612 + (TA)n Simple_repeat Simple_repeat 2 78 0 13483 182 45 6 chr9 80315015 80317990 -37544637 - L1MA4 LINE L1 -743 5607 2584 439 333 7 0 chr9 80317986 80318136 -37544491 - L1MA4 LINE L1 -5028 1253 1103 * 836 362 34 17 chr9 80318580 80319055 -37543572 - L1MA4 LINE L1 -5797 484 2 368 311 151 47 chr9 80319485 80319803 -37542824 + MLT1H LTR MaLR 1 351 -198 367 235 27 134 chr9 80320030 80320217 -37542410 + L2 LINE L2 2920 3086 -186 21 71 0 0 chr9 80320344 80320386 -37542241 + AT_rich Low_complexity Low_complexity 1 42 0 288 0 0 0 chr9 80320900 80320932 -37541695 + (TG)n Simple_repeat Simple_repeat 1 32 0 21 0 0 0 chr9 80320990 80321011 -37541616 + AT_rich Low_complexity Low_complexity 1 21 0 497 284 37 32 chr9 80321329 80321519 -37541108 - MIR SINE MIR -35 227 37 22 0 0 0 chr9 80323323 80323345 -37539282 + AT_rich Low_complexity Low_complexity 1 22 0 233 164 0 18 chr9 80323685 80323740 -37538887 + (CATATA)n Simple_repeat Simple_repeat 5 58 0 258 172 52 43 chr9 80323773 80323889 -37538738 + (TA)n Simple_repeat Simple_repeat 2 118 0 261 224 0 17 chr9 80325042 80325100 -37537527 + MIR SINE MIR 75 131 -77 200 270 279 0 chr9 80325463 80325574 -37537053 + L3b LINE CR1 1217 1358 -225 405 306 94 6 chr9 80325965 80326125 -37536502 - MER5A DNA MER1_type -3 186 13 454 280 161 11 chr9 80327537 80327723 -37534904 + MIR SINE MIR 49 262 0 393 102 0 0 chr9 80328150 80328209 -37534418 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 445 239 5 27 chr9 80328702 80328886 -37533741 + (TA)n Simple_repeat Simple_repeat 1 180 0 * 457 226 0 29 chr9 80328770 80329018 -37533609 + (TATG)n Simple_repeat Simple_repeat 1 240 0 308 314 132 8 chr9 80329875 80329996 -37532631 - L2 LINE L2 0 3272 3137 252 279 23 70 chr9 80330026 80330155 -37532472 - MIR SINE MIR -112 150 28 252 259 0 0 chr9 80330257 80330315 -37532312 - MARNA DNA Mariner -92 494 437 376 287 11 0 chr9 80330315 80330402 -37532225 - L2 LINE L2 -1 3271 3184 935 278 107 15 chr9 80330830 80331363 -37531264 - L1ME4a LINE L1 -135 5986 5405 231 324 18 27 chr9 80331775 80331886 -37530741 - MIR SINE MIR -15 247 138 200 345 0 0 chr9 80331881 80331936 -37530691 + MIR SINE MIR 208 262 0 * 29 60 0 0 chr9 80332008 80332058 -37530569 + AT_rich Low_complexity Low_complexity 1 50 0 352 290 19 0 chr9 80332065 80332172 -37530455 - L1ME4a LINE L1 -1524 4622 4514 445 322 140 23 chr9 80332515 80332866 -37529761 + L2 LINE L2 2921 3312 -1 183 80 0 0 chr9 80333269 80333294 -37529333 + (T)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr9 80334533 80334554 -37528073 + AT_rich Low_complexity Low_complexity 1 21 0 341 83 0 0 chr9 80335237 80335285 -37527342 + MADE1 DNA Mariner 33 80 0 2181 89 10 0 chr9 80335766 80336070 -37526557 + L1PA13 LINE L1 5851 6157 -6 21 0 0 0 chr9 80337606 80337627 -37525000 + AT_rich Low_complexity Low_complexity 1 21 0 201 94 0 0 chr9 80340936 80340968 -37521659 + (TCTA)n Simple_repeat Simple_repeat 1 32 0 359 299 103 60 chr9 80341510 80341694 -37520933 + MIR SINE MIR 19 210 -52 441 304 28 90 chr9 80343182 80343537 -37519090 - L2 LINE L2 -42 3230 2898 559 335 120 4 chr9 80343905 80344138 -37518489 + L3 LINE CR1 803 1062 -515 204 344 52 39 chr9 80344245 80344399 -37518228 - L2 LINE L2 -438 2876 2721 29 0 0 0 chr9 80344781 80344810 -37517817 + AT_rich Low_complexity Low_complexity 1 29 0 518 232 80 33 chr9 80344889 80345040 -37517587 - L2 LINE L2 -2 3311 3154 187 296 70 0 chr9 80347512 80347583 -37515044 + L2 LINE L2 3194 3269 -3 1123 301 138 9 chr9 80349072 80349728 -37512899 + L2 LINE L2 2572 3313 0 2399 100 0 0 chr9 80350382 80350682 -37511945 + AluSx SINE Alu 1 300 -12 234 0 0 0 chr9 80351271 80351297 -37511330 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 38 39 0 0 chr9 80352131 80352183 -37510444 + AT_rich Low_complexity Low_complexity 1 52 0 27 0 0 0 chr9 80352253 80352280 -37510347 + AT_rich Low_complexity Low_complexity 1 27 0 1968 156 0 7 chr9 80352326 80352627 -37510000 - AluSx SINE Alu -13 299 1 2320 71 0 0 chr9 80353864 80354197 -37508430 - AluSg SINE Alu 0 333 1 21 36 0 0 chr9 80354329 80354357 -37508270 + AT_rich Low_complexity Low_complexity 1 28 0 291 225 50 25 chr9 80354773 80354853 -37507774 + MIR3 SINE MIR 81 162 -46 619 259 99 17 chr9 80354919 80355157 -37507470 + MIR SINE MIR 4 261 -1 361 253 167 12 chr9 80355906 80356068 -37506559 - MIR SINE MIR -44 218 32 272 220 120 10 chr9 80356684 80356784 -37505843 + MER63A DNA MER1_type 96 206 -4 275 267 33 0 chr9 80358576 80358666 -37503961 + G-rich Low_complexity Low_complexity 5 97 0 456 317 68 5 chr9 80358764 80358969 -37503658 + L2 LINE L2 3095 3312 -1 521 222 145 0 chr9 80360409 80360526 -37502101 - MER45A DNA AcHobo -44 134 1 276 243 56 47 chr9 80361146 80361253 -37501374 - MER112 DNA MER1_type -12 248 141 809 153 203 8 chr9 80361602 80361853 -37500774 - MER33 DNA MER1_type -32 292 1 372 243 107 21 chr9 80362001 80362141 -37500486 + MIR SINE MIR 54 205 -57 375 288 49 66 chr9 80362555 80362741 -37499886 + MIR SINE MIR 20 206 -56 522 259 132 31 chr9 80363527 80363755 -37498872 + MIR SINE MIR 11 261 -1 611 336 63 67 chr9 80363834 80364295 -37498332 - L2 LINE L2 0 3272 2814 294 327 152 23 chr9 80364644 80364947 -37497680 - L2 LINE L2 -357 2957 2616 1959 200 19 32 chr9 80365020 80365490 -37497137 - MLT1C LTR MaLR -3 464 1 238 315 130 20 chr9 80366909 80367055 -37495572 - MIR SINE MIR -70 192 31 420 168 13 47 chr9 80367663 80367812 -37494815 + GA-rich Low_complexity Low_complexity 4 147 0 312 326 35 0 chr9 80368692 80368778 -37493849 - MIR SINE MIR -61 147 59 278 320 33 0 chr9 80369464 80369566 -37493061 - MIR SINE MIR -81 127 22 787 303 172 5 chr9 80369744 80370179 -37492448 + LTR33 LTR ERVL 2 509 -12 216 0 0 0 chr9 80370424 80370448 -37492179 + (T)n Simple_repeat Simple_repeat 1 24 0 328 311 42 0 chr9 80370838 80370957 -37491670 + MER94 DNA DNA 4 127 -7 528 342 89 0 chr9 80372117 80372342 -37490285 - MIR SINE MIR -17 245 1 696 260 26 52 chr9 80372515 80372784 -37489843 + MLT1L LTR MaLR 5 266 -349 397 287 138 11 chr9 80372862 80373043 -37489584 - MIR SINE MIR -27 235 32 752 200 0 0 chr9 80373391 80373516 -37489111 - FLAM_C SINE Alu -18 125 1 554 75 28 19 chr9 80374088 80374195 -37488432 + (TCTA)n Simple_repeat Simple_repeat 2 109 0 2314 101 0 0 chr9 80374334 80374631 -37487996 + AluY SINE Alu 1 297 -14 1573 189 69 23 chr9 80374647 80375039 -37487588 - MLT1C LTR MaLR -52 415 6 1694 291 113 29 chr9 80375126 80376092 -37486535 - L2 LINE L2 -5 3308 2200 228 273 52 26 chr9 80376299 80376376 -37486251 + MIR SINE MIR 74 152 -56 33 25 0 0 chr9 80377483 80377523 -37485104 + AT_rich Low_complexity Low_complexity 1 40 0 919 302 23 27 chr9 80377617 80378100 -37484527 + L1ME3A LINE L1 5488 5968 -202 2070 143 7 0 chr9 80378127 80378435 -37484192 - AluJb SINE Alu -2 310 1 195 100 0 0 chr9 80378894 80378924 -37483703 + (T)n Simple_repeat Simple_repeat 1 30 0 1944 64 4 0 chr9 80378936 80379172 -37483455 - AluY SINE Alu -74 237 1 365 346 58 19 chr9 80379456 80379661 -37482966 + L2 LINE L2 3101 3313 0 189 196 0 0 chr9 80379661 80379707 -37482920 + (TGAG)n Simple_repeat Simple_repeat 2 47 0 23 33 0 0 chr9 80379841 80379871 -37482756 + AT_rich Low_complexity Low_complexity 1 30 0 2082 48 0 0 chr9 80380205 80380454 -37482173 + AluYb8 SINE Alu 65 313 -5 226 0 59 0 chr9 80380821 80380855 -37481772 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 3181 31 3 0 chr9 80380870 80381251 -37481376 - L1PA2 LINE L1 0 6155 5774 3214 21 0 14 chr9 80381251 80381815 -37480812 + L1P1 LINE L1 4982 5537 -618 615 239 133 32 chr9 80382672 80382890 -37479737 - MIR SINE MIR -1 261 22 1589 203 79 6 chr9 80383327 80383667 -37478960 - MLT1A1 LTR MaLR 0 365 1 181 257 0 0 chr9 80383894 80383929 -37478698 - L2 LINE L2 -33 3239 3205 2282 87 0 0 chr9 80384235 80384521 -37478106 + AluSx SINE Alu 11 296 -16 337 403 63 0 chr9 80385911 80386070 -37476557 + MIR3 SINE MIR 34 202 -6 477 147 0 0 chr9 80386120 80386195 -37476432 + FLAM_C SINE Alu 29 103 -40 243 0 0 0 chr9 80386218 80386245 -37476382 + (CA)n Simple_repeat Simple_repeat 2 28 0 390 223 58 6 chr9 80387059 80387181 -37475446 - MIR SINE MIR -71 137 14 28 0 0 0 chr9 80387421 80387449 -37475178 + AT_rich Low_complexity Low_complexity 1 28 0 5198 27 0 0 chr9 80387449 80388049 -37474578 - L1PA3 LINE L1 -3 6152 5553 534 29 0 0 chr9 80388049 80388119 -37474508 + L1P1 LINE L1 5418 5487 -668 282 243 206 15 chr9 80388126 80388262 -37474365 - MLT1K LTR MaLR -411 177 16 192 347 0 0 chr9 80388282 80388331 -37474296 + L2 LINE L2 3177 3225 -88 38 22 0 0 chr9 80388394 80388439 -37474188 + AT_rich Low_complexity Low_complexity 1 45 0 341 237 166 79 chr9 80389818 80389957 -37472670 - MER5A DNA MER1_type -25 164 14 253 227 159 0 chr9 80390016 80390104 -37472523 + MIR SINE MIR 36 137 -71 285 232 80 29 chr9 80392286 80392424 -37470203 + L1ME4a LINE L1 5742 5886 -235 204 125 0 0 chr9 80392495 80392527 -37470100 + (CA)n Simple_repeat Simple_repeat 2 33 0 893 323 8 4 chr9 80392892 80393152 -37469475 - MIR SINE MIR 0 262 2 503 289 89 5 chr9 80393641 80393831 -37468796 - MIR SINE MIR -55 207 2 375 294 158 0 chr9 80393878 80394024 -37468603 - MIR SINE MIR -30 232 64 452 282 157 84 chr9 80395123 80395716 -37466911 + L2 LINE L2 2683 3313 0 1709 176 68 28 chr9 80396712 80397036 -37465591 + MER1B DNA MER1_type 1 337 0 350 272 32 0 chr9 80397082 80397184 -37465443 - MER5A DNA MER1_type -80 109 4 222 241 13 101 chr9 80397194 80397273 -37465354 - L3 LINE CR1 -82 1495 1424 2611 59 0 0 chr9 80397274 80397580 -37465047 + AluY SINE Alu 1 306 -5 31 58 0 0 chr9 80397654 80397706 -37464921 + AT_rich Low_complexity Low_complexity 1 52 0 290 293 143 8 chr9 80397725 80397858 -37464769 - MIR SINE MIR -95 167 17 480 226 57 8 chr9 80398011 80398135 -37464492 + MER94 DNA DNA 5 134 0 1315 199 9 0 chr9 80398471 80398692 -37463935 + MER58A DNA MER1_type 2 224 0 1744 124 55 29 chr9 80399101 80399401 -37463226 - AluSx SINE Alu 0 311 5 698 339 33 0 chr9 80399551 80399793 -37462834 - MIR SINE MIR -1 261 12 2197 63 0 4 chr9 80400316 80400586 -37462041 - AluY SINE Alu -12 299 31 205 296 0 0 chr9 80400709 80400763 -37461864 - MIR3 SINE MIR -25 183 130 445 310 50 25 chr9 80400797 80401039 -37461588 - MIR SINE MIR -12 250 3 201 156 0 0 chr9 80401538 80401570 -37461057 + T-rich Low_complexity Low_complexity 1 32 0 282 242 30 0 chr9 80401857 80401923 -37460704 - MIR SINE MIR -24 238 171 298 357 58 31 chr9 80402192 80402416 -37460211 - MIR SINE MIR -32 230 1 203 254 45 0 chr9 80403664 80403731 -37458896 - MIR SINE MIR -123 139 70 2379 109 48 28 chr9 80403813 80404170 -37458457 + THE1B LTR MaLR 1 364 0 5905 35 12 0 chr9 80404344 80405002 -37457625 + L1PA4 LINE L1 5475 6140 -15 1406 206 26 10 chr9 80405110 80405420 -37457207 - L1 LINE L1 -2071 4075 3761 513 246 14 21 chr9 80406448 80406590 -37456037 + L2 LINE L2 3173 3313 0 2252 113 3 0 chr9 80408820 80409120 -37453507 - AluSq SINE Alu -12 301 1 1895 144 3 3 chr9 80410060 80410351 -37452276 + AluJo SINE Alu 1 291 -21 226 162 0 0 chr9 80411555 80411592 -37451035 - tRNA-Val-GTG tRNA tRNA -39 37 1 205 232 188 0 chr9 80411680 80411749 -37450878 - MIR3 SINE MIR -15 193 112 682 191 186 25 chr9 80412123 80412322 -37450305 + MIR SINE MIR 31 261 -1 189 0 0 0 chr9 80412394 80412415 -37450212 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 264 248 139 16 chr9 80412971 80413100 -37449527 + L2 LINE L2 3169 3313 0 399 179 163 132 chr9 80413584 80413774 -37448853 + MIR SINE MIR 65 260 -2 2278 88 3 16 chr9 80413818 80414123 -37448504 + AluSc SINE Alu 5 305 -4 381 287 85 0 chr9 80414129 80414223 -37448404 + L2 LINE L2 3169 3270 -2 195 167 83 0 chr9 80414514 80414562 -37448065 - L3b LINE CR1 -8 1575 1524 204 40 0 0 chr9 80416764 80416789 -37445838 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 367 349 21 58 chr9 80416853 80417042 -37445585 + MER5A DNA MER1_type 3 184 -5 216 0 0 0 chr9 80418903 80418927 -37443700 + (T)n Simple_repeat Simple_repeat 1 24 0 1456 284 71 39 chr9 80419729 80420247 -37442380 + MLT1H LTR MaLR 15 549 0 878 256 54 39 chr9 80422469 80422727 -37439900 - MIR SINE MIR 0 262 1 3588 185 16 56 chr9 80424711 80425463 -37437164 + MER72 LTR ERV1 1 722 0 299 245 122 0 chr9 80425678 80425776 -37436851 - MIR3 SINE MIR -14 194 85 184 309 71 24 chr9 80425896 80425980 -37436647 - MIR SINE MIR -173 89 2 968 219 85 87 chr9 80426505 80426871 -37435756 + MLT1A1 LTR MaLR 1 365 0 641 287 38 10 chr9 80427233 80427442 -37435185 - MIR SINE MIR -31 231 17 494 249 104 59 chr9 80428366 80428587 -37434040 - MIR SINE MIR -17 245 15 1926 152 18 0 chr9 80429227 80429510 -37433117 - AluSx SINE Alu -24 288 1 189 0 0 0 chr9 80480001 80480022 -37382605 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 510 211 9 0 chr9 80480024 80480138 -37382489 - L1P LINE L1 -1105 5041 4927 1714 83 36 8 chr9 80480138 80480388 -37382239 + L1PA12 LINE L1 5909 6168 0 413 352 54 69 chr9 80481370 80481759 -37380868 - L2 LINE L2 0 3272 2890 405 191 146 0 chr9 80482076 80482165 -37380462 + Tigger3b DNA MER2_type 1 102 -1129 * 2356 139 122 18 chr9 80482163 80482631 -37379996 + Tigger3b DNA MER2_type 274 801 -2227 2075 104 0 11 chr9 80482631 80482918 -37379709 + AluSc SINE Alu 1 284 -25 2356 139 122 18 chr9 80482918 80482958 -37379669 + Tigger3b DNA MER2_type 801 835 -396 1256 155 128 0 chr9 80482957 80483176 -37379451 + Tigger3b DNA MER2_type 985 1231 0 * 198 298 0 18 chr9 80483832 80483889 -37378738 + L3 LINE CR1 1499 1554 -23 715 276 127 52 chr9 80485961 80486673 -37375954 + L2 LINE L2 2528 3281 -32 366 286 36 50 chr9 80487402 80487463 -37375164 - L2 LINE L2 0 3313 3253 1798 193 16 66 chr9 80487463 80487812 -37374815 + MER47B DNA MER2_type 1 325 -1998 216 86 0 0 chr9 80487812 80487847 -37374780 + (TTTAA)n Simple_repeat Simple_repeat 1 35 0 1798 193 16 66 chr9 80487847 80487937 -37374690 + MER47B DNA MER2_type 325 418 0 366 286 36 50 chr9 80487937 80488015 -37374612 - L2 LINE L2 -60 3253 3176 1313 171 13 49 chr9 80488029 80488310 -37374317 + LTR1 LTR ERV1 1 235 -550 277 247 6 24 chr9 80488499 80488669 -37373958 + LTR1B LTR ERV1 572 812 -14 663 274 177 18 chr9 80488719 80488945 -37373682 - MIR SINE MIR 0 262 1 194 241 74 0 chr9 80492594 80492648 -37369979 + MIR SINE MIR 119 176 -86 3326 144 75 12 chr9 80493866 80494451 -37368176 - MER44D DNA MER2_type -83 622 1 538 193 90 118 chr9 80494470 80494682 -37367945 + LTR50 LTR ERVL 113 318 -477 897 281 126 8 chr9 80494832 80495198 -37367429 + LTR50 LTR ERVL 345 753 -42 694 233 29 134 chr9 80495757 80496032 -37366595 - MIR SINE MIR -4 258 13 295 314 102 51 chr9 80496325 80496462 -37366165 - MER5A DNA MER1_type 0 189 35 836 161 0 7 chr9 80496759 80496902 -37365725 + FLAM_C SINE Alu 1 142 -1 477 186 69 20 chr9 80496915 80497017 -37365610 + FRAM SINE Alu 63 169 -7 310 266 31 39 chr9 80497317 80497445 -37365182 + HAL1 LINE L1 1061 1187 -1320 195 42 0 0 chr9 80498166 80498190 -37364437 + (A)n Simple_repeat Simple_repeat 1 24 0 457 181 24 12 chr9 80498340 80498423 -37364204 + AluJ/FLAM SINE Alu 1 84 -228 313 258 34 34 chr9 80498695 80498784 -37363843 - L2 LINE L2 0 3272 3184 21 0 0 0 chr9 80498905 80498926 -37363701 + AT_rich Low_complexity Low_complexity 1 21 0 180 274 40 97 chr9 80499408 80499532 -37363095 - MIR SINE MIR -19 243 127 547 208 84 98 chr9 80499862 80500136 -37362491 + MER102b DNA MER1_type 72 341 0 249 301 65 59 chr9 80500144 80500330 -37362297 - MER5A DNA MER1_type 0 189 3 270 272 185 0 chr9 80500411 80500503 -37362124 - MER5A DNA MER1_type -43 146 38 282 238 0 16 chr9 80501179 80501242 -37361385 - L2 LINE L2 0 3313 3252 1221 196 74 12 chr9 80501657 80501994 -37360633 - MER113 DNA MER1_type? -33 488 131 288 264 109 0 chr9 80502096 80502206 -37360421 - MER113 DNA MER1_type? -399 122 1 2212 111 0 7 chr9 80502285 80502583 -37360044 + AluSg SINE Alu 1 296 -14 202 146 49 0 chr9 80503488 80503529 -37359098 + L2 LINE L2 3269 3311 -2 1331 124 19 0 chr9 80503954 80504164 -37358463 + L1PA13 LINE L1 5950 6163 0 2624 91 6 0 chr9 80504223 80504576 -37358051 + THE1A LTR MaLR 1 355 0 5247 132 24 7 chr9 80504576 80505450 -37357177 + THE1A-int LTR MaLR 1 889 -691 499 85 24 0 chr9 80506088 80506170 -37356457 + THE1A-int LTR MaLR 1497 1580 0 1058 93 31 0 chr9 80506170 80506332 -37356295 + THE1A LTR MaLR 1 167 -188 4585 109 114 134 chr9 80506332 80507862 -37354765 - pTR5 LTR ERV1 -18 2420 743 1409 117 9 0 chr9 80507864 80508077 -37354550 + THE1A LTR MaLR 141 355 0 694 273 108 35 chr9 80508950 80509265 -37353362 + L2 LINE L2 2915 3252 -61 398 213 0 0 chr9 80509761 80509800 -37352827 + MER3 DNA MER1_type 9 47 -162 225 181 56 28 chr9 80509800 80509872 -37352755 - MER3 DNA MER1_type 0 209 136 68 13 0 0 chr9 80509872 80509947 -37352680 + AT_rich Low_complexity Low_complexity 1 75 0 427 92 40 0 chr9 80509949 80510025 -37352602 - L1MA1 LINE L1 0 6302 6224 2024 191 57 38 chr9 80512413 80512909 -37349718 - MLT1D LTR MaLR 0 505 1 288 351 94 23 chr9 80513631 80513802 -37348825 - MIR SINE MIR -77 185 3 724 202 0 0 chr9 80516087 80516211 -37346416 - FLAM_A SINE Alu -9 124 1 352 293 157 51 chr9 80520155 80520544 -37342083 + L1M2 LINE L1 676 1105 -5744 256 259 24 47 chr9 80522895 80522980 -37339647 - L2 LINE L2 -1 3312 3230 1090 279 91 30 chr9 80523029 80523595 -37339032 - L2 LINE L2 -74 3239 2636 266 331 8 54 chr9 80523596 80523726 -37338901 - L2 LINE L2 -595 2719 2596 274 317 12 0 chr9 80523770 80523852 -37338775 - MIR SINE MIR -112 150 68 256 252 234 47 chr9 80526034 80526141 -37336486 - MIR SINE MIR -116 146 20 210 191 0 0 chr9 80527410 80527457 -37335170 + (CTA)n Simple_repeat Simple_repeat 1 47 0 1761 230 52 92 chr9 80530513 80531131 -37331496 - MLT1E LTR MaLR 0 593 1 363 363 31 22 chr9 80531861 80532087 -37330540 + L1ME LINE L1 5596 5823 -298 23 0 0 0 chr9 80532202 80532225 -37330402 + AT_rich Low_complexity Low_complexity 1 23 0 191 288 153 17 chr9 80532584 80532702 -37329925 - MIR SINE MIR -50 212 79 23 0 0 0 chr9 80537164 80537187 -37325440 + AT_rich Low_complexity Low_complexity 1 23 0 2542 160 19 2 chr9 80537207 80537626 -37325001 - MSTB LTR MaLR 0 426 1 923 290 33 40 chr9 80537929 80538321 -37324306 - LTR16A LTR ERVL -1 449 61 1271 225 33 25 chr9 80538321 80538725 -37323902 + MLT2B1 LTR ERVL 1 456 -64 2147 129 8 11 chr9 80538727 80539083 -37323544 - MER47A DNA MER2_type -1 365 11 237 108 0 0 chr9 80539087 80539124 -37323503 + MLT2B1 LTR ERVL 464 500 -15 233 317 10 59 chr9 80539387 80539488 -37323139 + MIR SINE MIR 15 110 -152 274 183 0 50 chr9 80539595 80539655 -37322972 - MIR SINE MIR -101 161 105 210 386 23 38 chr9 80539909 80540041 -37322586 - L2 LINE L2 0 3272 3143 698 236 77 11 chr9 80540696 80540878 -37321749 + MIR SINE MIR 26 219 -43 890 249 61 8 chr9 80541021 80541266 -37321361 + MIR SINE MIR 5 262 0 21 36 0 0 chr9 80542649 80542677 -37319950 + AT_rich Low_complexity Low_complexity 1 28 0 558 160 40 67 chr9 80542725 80542875 -37319752 - L1MA7 LINE L1 -1 6290 6145 * 889 171 49 24 chr9 80542873 80543078 -37319549 + L1MA7 LINE L1 5938 6147 -144 27 29 0 0 chr9 80543089 80543123 -37319504 + AT_rich Low_complexity Low_complexity 1 34 0 4588 126 26 4 chr9 80543279 80544035 -37318592 - L1PA15 LINE L1 -22 6143 5371 661 261 26 26 chr9 80544131 80544326 -37318301 - MIR SINE MIR -1 261 67 596 277 117 27 chr9 80544587 80545001 -37317626 + L1ME LINE L1 5347 5806 -315 240 298 58 58 chr9 80546453 80546574 -37316053 + L3 LINE CR1 1415 1535 -42 22 0 0 0 chr9 80546836 80546858 -37315769 + AT_rich Low_complexity Low_complexity 1 22 0 194 237 0 0 chr9 80547697 80547735 -37314892 - MIR SINE MIR 0 262 225 201 121 0 0 chr9 80547753 80547786 -37314841 + (CA)n Simple_repeat Simple_repeat 2 34 0 187 325 130 0 chr9 80548323 80548400 -37314227 + L2 LINE L2 3225 3311 -2 1791 151 0 25 chr9 80548477 80548762 -37313865 + AluSx SINE Alu 3 280 -32 367 138 46 0 chr9 80548894 80548959 -37313668 + Alu SINE Alu 233 300 0 767 183 22 0 chr9 80549162 80549299 -37313328 - FRAM SINE Alu -16 160 21 190 384 101 7 chr9 80550557 80550695 -37311932 + L2 LINE L2 3122 3272 0 2139 122 0 0 chr9 80552982 80553277 -37309350 - AluSc SINE Alu -14 295 1 358 290 233 43 chr9 80553656 80554150 -37308477 + L2 LINE L2 2643 3313 0 * 412 306 115 31 chr9 80554146 80554434 -37308193 - L2 LINE L2 -410 2904 2593 298 321 136 36 chr9 80554444 80554547 -37308080 + MIR SINE MIR 9 100 -162 1190 259 76 21 chr9 80554547 80554983 -37307644 + LTR16B LTR ERVL 5 464 0 298 321 136 36 chr9 80554983 80555100 -37307527 + MIR SINE MIR 100 251 -11 391 326 31 50 chr9 80555183 80555441 -37307186 - L2 LINE L2 -842 2472 2220 735 278 9 61 chr9 80556684 80556755 -37305872 + MIR SINE MIR 1 74 -188 1552 174 50 0 chr9 80556755 80556914 -37305713 - AluSx SINE Alu -16 296 115 252 0 0 0 chr9 80556914 80556942 -37305685 + (TA)n Simple_repeat Simple_repeat 2 29 0 1552 174 50 0 chr9 80556942 80557064 -37305563 - AluSx SINE Alu -197 115 1 735 278 9 61 chr9 80557064 80557222 -37305405 + MIR SINE MIR 74 218 -44 600 322 58 12 chr9 80558149 80558391 -37304236 - MIR SINE MIR -2 260 8 546 219 9 0 chr9 80559877 80559991 -37302636 - AluSx SINE Alu -4 305 191 861 147 22 0 chr9 80559992 80560128 -37302499 - AluSx SINE Alu -172 141 3 210 318 0 30 chr9 80560672 80560738 -37301889 - L2 LINE L2 -5 3308 3245 501 318 43 15 chr9 80562381 80562595 -37300032 + MIR SINE MIR 34 252 -10 618 207 25 116 chr9 80562720 80562918 -37299709 + MIR SINE MIR 1 180 -82 224 136 76 15 chr9 80562923 80562989 -37299638 + (TAGA)n Simple_repeat Simple_repeat 3 72 0 46 54 0 0 chr9 80563008 80563082 -37299545 + AT_rich Low_complexity Low_complexity 1 74 0 303 44 0 0 chr9 80563416 80563461 -37299166 + AluY SINE Alu 255 299 -1 211 256 0 0 chr9 80563530 80563569 -37299058 - L2 LINE L2 -23 3290 3252 22 0 0 0 chr9 80564131 80564153 -37298474 + AT_rich Low_complexity Low_complexity 1 22 0 259 209 0 0 chr9 80564305 80564348 -37298279 + L2 LINE L2 3262 3304 -9 2007 90 29 35 chr9 80564359 80564670 -37297957 + AluSc SINE Alu 1 309 0 231 146 0 0 chr9 80564685 80564726 -37297901 + (GGGAA)n Simple_repeat Simple_repeat 3 43 0 474 61 0 0 chr9 80564876 80564942 -37297685 + (TC)n Simple_repeat Simple_repeat 1 66 0 2473 35 0 0 chr9 80565761 80566069 -37296558 - AluY SINE Alu 0 308 1 6669 5 0 0 chr9 80566324 80567068 -37295559 + L1HS LINE L1 5412 6155 0 235 354 10 40 chr9 80568120 80568219 -37294408 - L2 LINE L2 0 3313 3218 2913 266 74 68 chr9 80568433 80571340 -37291287 - L1M2 LINE L1 -727 5437 2528 1602 207 85 52 chr9 80571336 80571451 -37291176 + L1MC3 LINE L1 6765 6875 -910 * 1783 199 11 14 chr9 80571451 80571817 -37290810 - MLT1A1 LTR MaLR 0 365 1 1602 207 85 52 chr9 80571817 80572218 -37290409 + L1MC3 LINE L1 6875 7298 -487 893 315 57 32 chr9 80572222 80572459 -37290168 - L2 LINE L2 -33 3280 3025 2372 89 3 0 chr9 80572459 80572761 -37289866 - AluSg SINE Alu -7 303 1 893 315 57 32 chr9 80572761 80572964 -37289663 - L2 LINE L2 -288 3025 2829 1259 203 82 106 chr9 80572966 80573106 -37289521 - MLT1C LTR MaLR 0 467 325 2885 6 0 0 chr9 80573106 80573417 -37289210 - AluYa5 SINE Alu 0 311 1 1259 203 82 106 chr9 80573417 80573749 -37288878 - MLT1C LTR MaLR -142 325 6 2707 285 59 27 chr9 80573754 80574055 -37288572 - L2 LINE L2 -482 2832 2542 2151 118 57 14 chr9 80574055 80574404 -37288223 + THE1B LTR MaLR 1 364 0 2707 285 59 27 chr9 80574404 80575139 -37287488 - L2 LINE L2 -772 2542 1763 826 226 0 0 chr9 80575144 80575290 -37287337 + MER20 DNA MER1_type 17 162 -57 2448 304 109 10 chr9 80575301 80576284 -37286343 + L2 LINE L2 492 1571 -1743 364 274 89 85 chr9 80576504 80577281 -37285346 - L1MEd LINE L1 -4994 1125 346 1512 185 15 65 chr9 80577679 80578020 -37284607 + MER58B DNA MER1_type 2 325 -16 21 36 0 0 chr9 80579169 80579197 -37283430 + AT_rich Low_complexity Low_complexity 1 28 0 450 286 5 43 chr9 80579391 80579576 -37283051 + MER5B DNA MER1_type 1 178 0 405 183 14 0 chr9 80579584 80579655 -37282972 - MER20 DNA MER1_type 0 219 148 189 0 0 0 chr9 80579671 80579692 -37282935 + (ATG)n Simple_repeat Simple_repeat 3 23 0 205 279 12 35 chr9 80579692 80579773 -37282854 - MIR SINE MIR -22 240 162 185 371 0 0 chr9 80579841 80579903 -37282724 + MIR SINE MIR 31 92 -170 712 285 103 19 chr9 80580038 80580559 -37282068 + L1M4c LINE L1 1075 1852 -4711 1362 49 0 0 chr9 80580559 80580723 -37281904 + L1PA10 LINE L1 5995 6158 -10 712 285 103 19 chr9 80580723 80580825 -37281802 + L1M4c LINE L1 1852 1944 -4619 466 258 30 0 chr9 80580822 80580989 -37281638 + L1M4c LINE L1 2431 2602 -3961 * 1745 176 48 38 chr9 80581045 80581074 -37281553 - MLT2D LTR ERVL -12 402 375 423 0 0 0 chr9 80581074 80581121 -37281506 + (TG)n Simple_repeat Simple_repeat 1 47 0 1745 176 48 38 chr9 80581121 80581489 -37281138 - MLT2D LTR ERVL -39 375 1 407 286 84 8 chr9 80581489 80581608 -37281019 - MIR SINE MIR -99 163 36 220 317 83 41 chr9 80582904 80583049 -37279578 - L2 LINE L2 0 3313 3163 924 308 33 48 chr9 80583081 80583480 -37279147 + L2 LINE L2 2920 3312 -1 240 59 0 0 chr9 80583654 80583688 -37278939 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 648 281 183 52 chr9 80584566 80585302 -37277325 - L2 LINE L2 -458 2856 2024 238 326 146 40 chr9 80585513 80585814 -37276813 - L2 LINE L2 -2892 422 90 190 331 166 14 chr9 80586155 80586294 -37276333 + L2 LINE L2 3117 3276 -37 203 237 0 0 chr9 80586297 80586335 -37276292 + (CA)n Simple_repeat Simple_repeat 1 38 0 183 256 145 48 chr9 80586794 80587021 -37275606 + L3 LINE CR1 1137 1385 -192 * 279 275 0 33 chr9 80587014 80587105 -37275522 + L2 LINE L2 2820 2907 -365 203 458 0 0 chr9 80587272 80587379 -37275248 + L2 LINE L2 3162 3268 -4 * 342 288 88 24 chr9 80587369 80587539 -37275088 + L3 LINE CR1 1396 1576 -1 336 48 0 0 chr9 80588287 80588329 -37274298 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 27 0 0 0 chr9 80588714 80588741 -37273886 + AT_rich Low_complexity Low_complexity 1 27 0 1731 229 242 16 chr9 80588752 80589236 -37273391 + MLT1E LTR MaLR 1 593 0 2004 237 77 8 chr9 80589594 80590100 -37272527 + MER119 DNA MER1_type 29 569 -14 3696 178 7 23 chr9 80590107 80590301 -37272326 + L1MB2 LINE L1 5442 5638 -533 1806 148 0 4 chr9 80590301 80590600 -37272027 + AluSx SINE Alu 15 312 0 3696 178 7 23 chr9 80590600 80591143 -37271484 + L1MB2 LINE L1 5638 6169 -2 26 64 0 0 chr9 80591489 80591536 -37271091 + AT_rich Low_complexity Low_complexity 1 47 0 1767 154 0 24 chr9 80591542 80591834 -37270793 - AluJo SINE Alu -27 285 1 26 0 0 0 chr9 80592594 80592620 -37270007 + AT_rich Low_complexity Low_complexity 1 26 0 390 298 42 100 chr9 80593338 80593768 -37268859 + L1ME4a LINE L1 4731 5135 -1011 630 256 186 43 chr9 80593910 80594442 -37268185 + L1ME4a LINE L1 5302 5756 -365 194 0 39 0 chr9 80594442 80594468 -37268159 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1491 39 0 6 chr9 80594471 80594653 -37267974 - L1PA4 LINE L1 -8 6147 5967 630 256 186 43 chr9 80594653 80594701 -37267926 + L1PA4 LINE L1 5757 5970 -151 1918 55 0 4 chr9 80594937 80595192 -37267435 - AluY SINE Alu 0 303 50 291 253 53 13 chr9 80595410 80595485 -37267142 - MIR3 SINE MIR -15 193 116 540 297 41 14 chr9 80597733 80597878 -37264749 - MER91A DNA MER1_type -33 163 15 242 254 16 0 chr9 80598521 80598584 -37264043 + (TATATG)n Simple_repeat Simple_repeat 3 66 0 653 144 14 68 chr9 80599473 80599619 -37263008 + MLT2B3 LTR ERVL 1 138 -416 1080 214 0 20 chr9 80599659 80599963 -37262664 + L1MA4 LINE L1 4938 5235 -911 4893 155 13 31 chr9 80599966 80600973 -37261654 + L1MA4 LINE L1 5298 6286 -14 2431 127 3 0 chr9 80600973 80601327 -37261300 + THE1A LTR MaLR 1 355 0 11381 108 1 3 chr9 80601327 80602911 -37259716 + THE1A-int LTR MaLR 1 1580 0 2387 103 3 3 chr9 80602911 80603250 -37259377 + THE1A LTR MaLR 17 355 0 2091 138 0 35 chr9 80603272 80603591 -37259036 + AluSx SINE Alu 1 308 -4 749 171 27 20 chr9 80603599 80603745 -37258882 + MLT2B2 LTR ERVL 133 279 -236 2595 68 27 5 chr9 80603747 80604114 -37258513 + MLT2A1 LTR ERVL 1 375 -69 234 222 0 0 chr9 80604120 80604174 -37258453 + (TATATG)n Simple_repeat Simple_repeat 3 56 0 180 0 0 0 chr9 80604181 80604201 -37258426 + (CA)n Simple_repeat Simple_repeat 2 21 0 322 57 38 19 chr9 80604201 80604254 -37258373 + MLT2A1 LTR ERVL 400 453 0 932 210 18 0 chr9 80604254 80604457 -37258170 + MLT2B2 LTR ERVL 283 546 -8 2522 143 29 12 chr9 80604490 80604911 -37257716 + MSTA LTR MaLR 1 428 0 314 125 0 0 chr9 80605132 80605180 -37257447 + L1PA15 LINE L1 6052 6099 -66 3768 127 55 6 chr9 80605474 80606095 -37256532 - L1PA15 LINE L1 -3 6162 5512 327 284 118 16 chr9 80607843 80607989 -37254638 + MIR SINE MIR 2 158 -67 387 308 148 47 chr9 80608068 80608454 -37254173 + MLT1H LTR MaLR 123 547 -2 685 277 40 28 chr9 80609187 80609440 -37253187 - L2 LINE L2 -4 3309 3054 27877 122 13 57 chr9 80609619 80612230 -37250397 + L1PA7 LINE L1 9 2733 -3421 216 0 0 0 chr9 80612230 80612254 -37250373 + (CAA)n Simple_repeat Simple_repeat 1 24 0 27877 122 13 57 chr9 80612254 80612477 -37250150 + L1PA7 LINE L1 2733 2964 -3190 2234 82 11 0 chr9 80612477 80612781 -37249846 - AluSx SINE Alu 0 307 1 27877 122 13 57 chr9 80612781 80616373 -37246254 + L1PA7 LINE L1 2964 6147 -7 825 253 41 29 chr9 80616745 80617155 -37245472 - MLT1G1 LTR MaLR -27 528 87 961 131 34 11 chr9 80618100 80618276 -37244351 - L1MA3 LINE L1 0 6305 6126 190 290 40 60 chr9 80618424 80618524 -37244103 + L2 LINE L2 353 450 -2864 682 288 179 10 chr9 80618550 80618942 -37243685 + LTR50 LTR ERVL 104 561 -234 228 373 16 24 chr9 80619629 80619755 -37242872 - L2 LINE L2 -237 3035 2911 24 0 0 0 chr9 80620080 80620104 -37242523 + AT_rich Low_complexity Low_complexity 1 24 0 355 237 44 74 chr9 80622416 80622551 -37240076 - MLT1I LTR MaLR -269 140 10 323 238 43 180 chr9 80622590 80622935 -37239692 - L1M4 LINE L1 -3345 2801 2565 1205 196 145 8 chr9 80622935 80623190 -37239437 - AluJo SINE Alu -22 290 1 323 238 43 180 chr9 80623190 80623423 -37239204 - L1M4 LINE L1 -3581 2565 2302 697 276 16 44 chr9 80623476 80623726 -37238901 + L2 LINE L2 1978 2220 -1094 380 179 36 12 chr9 80623728 80623812 -37238815 - LTR50 LTR ERVL 0 795 710 9294 26 0 2 chr9 80624407 80626290 -37236337 + L1PA3 LINE L1 4271 6152 -3 411 270 0 58 chr9 80626622 80626759 -37235868 - MIR SINE MIR -46 216 88 241 341 141 12 chr9 80628080 80628165 -37234462 + MER5A DNA MER1_type 72 167 -22 * 300 284 12 25 chr9 80628117 80628198 -37234429 - MER5A DNA MER1_type -109 80 1 3172 153 29 60 chr9 80629163 80629680 -37232947 + MER44D DNA MER2_type 64 558 -2029 2284 128 0 0 chr9 80629680 80629993 -37232634 - AluSq SINE Alu 0 313 1 3172 153 29 60 chr9 80629993 80630129 -37232498 + MER44D DNA MER2_type 558 697 -8 681 293 185 13 chr9 80630602 80630981 -37231646 - MLT1J LTR MaLR -4 507 64 15047 108 4 0 chr9 80631178 80631663 -37230964 + L1PA8 LINE L1 3016 3497 -2675 207 0 0 0 chr9 80631663 80631686 -37230941 + (CAA)n Simple_repeat Simple_repeat 2 24 0 15047 108 4 0 chr9 80631686 80634357 -37228270 + L1PA8 LINE L1 3497 6171 -1 2325 90 7 0 chr9 80634645 80634944 -37227683 - AluSp SINE Alu -12 301 1 3039 179 10 2 chr9 80635061 80635576 -37227051 - LTR53 LTR ERVL 0 519 1 1726 138 0 12 chr9 80637099 80637353 -37225274 - AluSx SINE Alu -14 298 48 279 297 20 56 chr9 80637784 80638033 -37224594 + HAL1b LINE L1 215 454 -894 302 352 63 30 chr9 80638113 80638383 -37224244 + HAL1b LINE L1 538 816 -532 417 386 24 9 chr9 80640038 80640375 -37222252 - L1MEc LINE L1 -6013 383 42 436 162 86 8 chr9 80640388 80640505 -37222122 - MER69 DNA AcHobo -377 2149 2024 577 310 61 0 chr9 80640565 80640778 -37221849 - MER69 DNA AcHobo -986 240 15 22 0 0 0 chr9 80641566 80641588 -37221039 + AT_rich Low_complexity Low_complexity 1 22 0 493 109 11 11 chr9 80641738 80641830 -37220797 + L1MA7 LINE L1 6199 6290 -1 28 0 0 0 chr9 80641994 80642022 -37220605 + AT_rich Low_complexity Low_complexity 1 28 0 2526 136 16 121 chr9 80642209 80642762 -37219865 - LTR42 LTR ERVL 0 495 1 275 347 14 14 chr9 80643079 80643292 -37219335 + MLT1K LTR MaLR 376 588 0 866 232 64 60 chr9 80643784 80644017 -37218610 + MIR SINE MIR 8 241 -21 505 271 124 6 chr9 80645331 80645508 -37217119 + MIR SINE MIR 4 201 -61 21 0 0 0 chr9 80645578 80645599 -37217028 + AT_rich Low_complexity Low_complexity 1 21 0 2669 106 2 21 chr9 80646047 80646155 -37216472 - L1P LINE L1 -1034 5112 5004 2443 87 20 0 chr9 80646155 80646455 -37216172 - AluSq SINE Alu -7 306 1 2669 106 2 21 chr9 80646455 80646781 -37215846 - L1P LINE L1 -1142 5004 4686 781 87 40 0 chr9 80646776 80646902 -37215725 - L1P LINE L1 -1677 4469 4339 * 5688 96 32 2 chr9 80646902 80647851 -37214776 + L1PA8A LINE L1 5141 6113 -18 481 133 114 38 chr9 80647764 80647869 -37214758 + L1PA8 LINE L1 6054 6166 -6 1326 348 98 19 chr9 80648350 80649410 -37213217 + L2 LINE L2 1761 2904 -410 274 109 0 0 chr9 80649448 80649494 -37213133 + MADE1 DNA Mariner 1 46 -34 218 319 165 11 chr9 80649494 80649585 -37213042 + L2 LINE L2 2941 3045 -268 266 218 36 0 chr9 80650343 80650398 -37212229 + L2 LINE L2 3255 3311 -2 24 0 0 0 chr9 80651907 80651931 -37210696 + AT_rich Low_complexity Low_complexity 1 24 0 218 221 0 73 chr9 80652203 80652271 -37210356 - L2 LINE L2 -60 3253 3191 430 306 85 71 chr9 80652816 80653125 -37209502 + L1ME4a LINE L1 5650 5967 -199 218 364 114 8 chr9 80653134 80653266 -37209361 + MIR SINE MIR 22 167 -95 289 326 30 15 chr9 80653311 80653443 -37209184 + MIR SINE MIR 11 144 -118 674 257 83 46 chr9 80653454 80653695 -37208932 + MIR SINE MIR 13 262 0 445 202 147 9 chr9 80654558 80654667 -37207960 - L2 LINE L2 -5 3308 3185 23 0 0 0 chr9 80657210 80657233 -37205394 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr9 80657588 80657609 -37205018 + AT_rich Low_complexity Low_complexity 1 21 0 247 345 51 25 chr9 80657793 80657990 -37204637 + L2 LINE L2 2889 3090 -182 277 100 0 0 chr9 80660061 80660101 -37202526 - L1MA9 LINE L1 -2 6310 6271 2271 75 0 68 chr9 80660757 80661079 -37201548 - AluY SINE Alu -11 300 1 527 242 210 14 chr9 80661344 80661563 -37201064 + MIR SINE MIR 1 262 0 744 246 196 32 chr9 80663531 80663909 -37198718 + LTR16A1 LTR ERVL 5 444 -13 2203 233 92 15 chr9 80664183 80664729 -37197898 - MLT1E LTR MaLR -5 588 1 193 87 22 22 chr9 80665616 80665662 -37196965 + (TA)n Simple_repeat Simple_repeat 1 46 0 6493 87 0 0 chr9 80665668 80666619 -37196008 - L1PA10 LINE L1 -11 6157 5202 3932 145 13 0 chr9 80666619 80667254 -37195373 + L1P LINE L1 3821 4463 -1683 1523 64 25 0 chr9 80667269 80667472 -37195155 - L1MA1 LINE L1 0 6302 6095 288 293 79 68 chr9 80667492 80667772 -37194855 + HAL1b LINE L1 118 400 -948 435 298 71 77 chr9 80668327 80668693 -37193934 - HAL1 LINE L1 -873 1634 1271 1733 204 59 16 chr9 80668731 80669172 -37193455 - MLT1C LTR MaLR -1 466 7 180 343 134 15 chr9 80669658 80669725 -37192902 - MER5B DNA MER1_type -28 150 76 301 289 193 0 chr9 80669754 80669889 -37192738 - MER5A DNA MER1_type -6 183 23 674 257 7 0 chr9 80669901 80670053 -37192574 - MER5B DNA MER1_type -3 175 23 267 332 89 34 chr9 80670498 80670847 -37191780 - HAL1 LINE L1 -1428 1079 712 5462 21 0 0 chr9 80671256 80671880 -37190747 + L1PA3 LINE L1 5526 6149 -6 23 68 0 0 chr9 80671881 80671925 -37190702 + AT_rich Low_complexity Low_complexity 1 44 0 22 35 0 0 chr9 80672190 80672219 -37190408 + AT_rich Low_complexity Low_complexity 1 29 0 215 302 164 26 chr9 80672471 80672587 -37190040 + L2 LINE L2 3177 3308 -5 318 239 109 11 chr9 80673651 80673743 -37188884 + L1MC4 LINE L1 6603 6703 -1339 225 109 0 0 chr9 80673745 80673791 -37188836 - LTR66 LTR ERVL -171 439 394 322 253 51 0 chr9 80673874 80673953 -37188674 - L1MC4 LINE L1 -1342 6700 6618 1728 206 21 21 chr9 80673965 80674354 -37188273 - MLT1B LTR MaLR 0 390 2 502 191 0 140 chr9 80674378 80674432 -37188195 - L1MA10 LINE L1 -8 6326 6273 558 260 37 84 chr9 80674432 80674755 -37187872 - L1ME1 LINE L1 -31 6135 5828 238 290 32 0 chr9 80674755 80674817 -37187810 + L2 LINE L2 3209 3272 0 182 261 22 0 chr9 80675062 80675108 -37187519 - L2 LINE L2 -985 2329 2283 600 285 98 61 chr9 80675361 80675900 -37186727 - HAL1 LINE L1 -1063 1444 841 3230 143 37 3 chr9 80676327 80676899 -37185728 - L1MA4A LINE L1 -14 6289 5699 622 216 14 27 chr9 80677304 80677349 -37185278 + MLT1E2 LTR MaLR 481 525 -101 1851 152 169 5 chr9 80677349 80677717 -37184910 + MSTA LTR MaLR 1 428 0 622 216 14 27 chr9 80677717 80677819 -37184808 + MLT1E2 LTR MaLR 525 626 0 1994 178 22 6 chr9 80678126 80678485 -37184142 + MLT1A1 LTR MaLR 1 365 0 554 339 26 0 chr9 80678525 80678720 -37183907 + MLT1I LTR MaLR 206 405 -4 237 232 71 0 chr9 80678981 80679037 -37183590 - MER5B DNA MER1_type -1 177 118 744 321 12 21 chr9 80679835 80680078 -37182549 + MLT1I LTR MaLR 92 332 -77 1609 183 16 61 chr9 80680857 80681169 -37181458 - AluJo SINE Alu -14 298 1 1080 244 117 49 chr9 80681204 80681630 -37180997 - MER77 LTR ERV1 -6 599 145 332 318 74 7 chr9 80682091 80682174 -37180453 - L3 LINE CR1 -820 757 681 530 100 0 0 chr9 80682174 80682254 -37180373 - MADE1 DNA Mariner 0 80 1 332 318 74 7 chr9 80682254 80682318 -37180309 - L3 LINE CR1 -896 681 600 187 306 0 0 chr9 80683403 80683452 -37179175 + MER5B DNA MER1_type 1 49 -129 1885 187 97 127 chr9 80685611 80685749 -37176878 + MER72 LTR ERV1 14 155 -567 2433 131 48 31 chr9 80685749 80686170 -37176457 - MSTA LTR MaLR 0 428 1 1885 187 97 127 chr9 80686170 80686762 -37175865 + MER72 LTR ERV1 155 722 0 591 308 61 73 chr9 80687367 80687860 -37174767 + L2 LINE L2 2827 3313 0 1847 177 6 14 chr9 80689001 80689345 -37173282 + MER47A DNA MER2_type 26 366 0 195 261 0 0 chr9 80690384 80690453 -37172174 + CT-rich Low_complexity Low_complexity 1 69 0 23 0 0 0 chr9 80690887 80690910 -37171717 + AT_rich Low_complexity Low_complexity 1 23 0 830 231 42 69 chr9 80691750 80692007 -37170620 + MIR SINE MIR 15 262 0 737 291 41 23 chr9 80692009 80692229 -37170398 + MIR SINE MIR 12 235 -27 21 0 0 0 chr9 80692400 80692421 -37170206 + AT_rich Low_complexity Low_complexity 1 21 0 43 35 0 0 chr9 80692479 80692536 -37170091 + AT_rich Low_complexity Low_complexity 1 57 0 262 285 88 36 chr9 80692854 80692991 -37169636 - L2 LINE L2 -456 2858 2715 22 0 0 0 chr9 80693107 80693129 -37169498 + AT_rich Low_complexity Low_complexity 1 22 0 776 165 89 6 chr9 80693145 80693303 -37169324 + L1MC1 LINE L1 6163 6333 0 345 226 45 73 chr9 80693335 80693451 -37169176 - L1ME4a LINE L1 -255 5866 5755 1970 130 10 20 chr9 80693451 80693744 -37168883 + AluSx SINE Alu 7 296 -16 345 226 45 73 chr9 80693744 80693804 -37168823 - L1ME4a LINE L1 -366 5755 5695 186 305 68 0 chr9 80694609 80694668 -37167959 + MIR SINE MIR 80 142 -120 306 148 0 0 chr9 80694824 80694878 -37167749 + (T)n Simple_repeat Simple_repeat 1 54 0 376 299 107 21 chr9 80695121 80695308 -37167319 + MIR SINE MIR 26 228 -34 562 275 110 62 chr9 80695339 80695695 -37166932 - L2 LINE L2 0 3313 2941 200 378 14 14 chr9 80696521 80696595 -37166032 + L2 LINE L2 3141 3214 -58 22 0 0 0 chr9 80696863 80696885 -37165742 + AT_rich Low_complexity Low_complexity 1 22 0 259 354 53 57 chr9 80697844 80698053 -37164574 + MIR SINE MIR 5 212 -50 24 53 0 0 chr9 80698073 80698111 -37164516 + AT_rich Low_complexity Low_complexity 1 38 0 296 331 62 25 chr9 80700053 80700213 -37162414 - MER5A DNA MER1_type -23 166 1 212 233 33 33 chr9 80701032 80701092 -37161535 - L2 LINE L2 0 3313 3254 390 151 0 0 chr9 80701533 80701606 -37161021 + (CA)n Simple_repeat Simple_repeat 1 73 0 335 319 75 5 chr9 80702095 80702283 -37160344 - L2 LINE L2 -286 3027 2827 3015 222 62 28 chr9 80702724 80703084 -37159543 + L1ME1 LINE L1 4904 5250 -916 2611 137 69 88 chr9 80703084 80703618 -37159009 - MER1A DNA MER1_type 0 527 4 3015 222 62 28 chr9 80703618 80704479 -37158148 + L1ME1 LINE L1 5250 6161 -5 2092 133 0 0 chr9 80704660 80704962 -37157665 + AluSx SINE Alu 1 302 -10 584 302 71 47 chr9 80705045 80705624 -37157003 + L1MC4a LINE L1 5300 5642 -528 369 0 0 0 chr9 80706190 80706231 -37156396 + (CA)n Simple_repeat Simple_repeat 2 42 0 2169 127 0 13 chr9 80706359 80706667 -37155960 + AluSq SINE Alu 1 304 -9 27 96 0 0 chr9 80707595 80707678 -37154949 + AT_rich Low_complexity Low_complexity 1 83 0 24 32 0 0 chr9 80708323 80708354 -37154273 + AT_rich Low_complexity Low_complexity 1 31 0 22 106 0 0 chr9 80708394 80708479 -37154148 + AT_rich Low_complexity Low_complexity 1 85 0 415 280 78 21 chr9 80708512 80709136 -37153491 - L1ME4a LINE L1 -182 5939 5285 * 2284 160 24 75 chr9 80709133 80709229 -37153398 - L1MD2 LINE L1 -1 6358 6259 1730 202 12 12 chr9 80709229 80709565 -37153062 - MER1B DNA MER1_type -1 336 1 2284 160 24 75 chr9 80709565 80710013 -37152614 - L1MD2 LINE L1 -100 6259 5842 4891 41 0 0 chr9 80711082 80711707 -37150920 - L1PA3 LINE L1 0 6155 5547 438 292 19 37 chr9 80711752 80711913 -37150714 - MIR3 SINE MIR -4 204 47 476 327 111 14 chr9 80713010 80713307 -37149320 + LTR16C LTR ERVL 150 475 -16 3234 138 46 11 chr9 80713616 80714207 -37148420 - LTR38B LTR ERV1 0 611 1 379 254 31 23 chr9 80714335 80714465 -37148162 - L1ME4a LINE L1 0 6121 5991 639 214 132 13 chr9 80714857 80715016 -37147611 + MER45A DNA AcHobo 1 178 0 858 215 117 70 chr9 80717316 80717386 -37145241 + MER2 DNA MER2_type 24 89 -256 2885 6 0 0 chr9 80717386 80717698 -37144929 + AluYb8 SINE Alu 1 312 -6 858 215 117 70 chr9 80717698 80717925 -37144702 + MER2 DNA MER2_type 89 335 -10 4934 207 105 85 chr9 80717964 80718866 -37143761 + L1MDa LINE L1 17 969 -5571 195 69 0 0 chr9 80718866 80718895 -37143732 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 4934 207 105 85 chr9 80718895 80719667 -37142960 + L1MDa LINE L1 969 1724 -4816 772 179 26 0 chr9 80719819 80719970 -37142657 + MLT1C LTR MaLR 268 422 -45 53 40 0 0 chr9 80720791 80720865 -37141762 + AT_rich Low_complexity Low_complexity 1 74 0 1943 174 0 3 chr9 80721034 80721390 -37141237 - L1MB7 LINE L1 -9 6175 5821 239 222 0 0 chr9 80722884 80722929 -37139698 + Tigger2 DNA MER2_type 1 45 -2673 1184 144 0 6 chr9 80722949 80723129 -37139498 - AluSg/x SINE Alu 0 312 134 1581 129 27 144 chr9 80723149 80723553 -37139074 + Tigger2 DNA MER2_type 2334 2690 -28 28 29 0 0 chr9 80723700 80723735 -37138892 + AT_rich Low_complexity Low_complexity 1 35 0 291 339 44 104 chr9 80723921 80724237 -37138390 - L2 LINE L2 -21 3251 2955 1484 124 69 4 chr9 80724544 80724936 -37137691 + L1M2 LINE L1 5112 5524 -743 744 164 20 0 chr9 80724936 80725080 -37137547 + L1MA8 LINE L1 6140 6288 -3 216 281 62 0 chr9 80725117 80725181 -37137446 + MIR SINE MIR 45 112 -150 263 329 77 35 chr9 80725526 80725669 -37136958 + MIR SINE MIR 14 162 -100 457 301 124 22 chr9 80725684 80725910 -37136717 - MIR SINE MIR -12 250 2 214 222 0 0 chr9 80727406 80727451 -37135176 - MIR SINE MIR -9 253 209 242 313 78 8 chr9 80727529 80727657 -37134970 - MIR SINE MIR -70 192 56 1963 114 52 0 chr9 80728167 80728456 -37134171 + AluSp SINE Alu 1 304 -9 305 299 85 66 chr9 80728756 80729027 -37133600 - L1M4 LINE L1 -917 5229 4954 289 277 20 20 chr9 80729524 80729625 -37133002 - MIR3 SINE MIR -3 205 105 43078 50 2 0 chr9 80729808 80735947 -37126680 - L1PA4 LINE L1 -3 6152 1 25 31 0 0 chr9 80736400 80736432 -37126195 + AT_rich Low_complexity Low_complexity 1 32 0 812 190 86 6 chr9 80738807 80738981 -37123646 + LTR41 LTR ERVL 1 188 -585 326 250 111 60 chr9 80739423 80739639 -37122988 + LTR41 LTR ERVL 516 742 -31 1153 135 0 65 chr9 80739667 80739896 -37122731 + L1PA13 LINE L1 5947 6160 -3 205 186 23 0 chr9 80741020 80741063 -37121564 + CT-rich Low_complexity Low_complexity 1 44 0 981 314 61 16 chr9 80741352 80741776 -37120851 + LTR16C LTR ERVL 1 443 -48 710 312 64 26 chr9 80741816 80742310 -37120317 + HERVL LTR ERVL 4191 4700 -785 275 243 48 58 chr9 80743094 80743197 -37119430 + LTR33 LTR ERVL 411 512 -9 546 287 55 0 chr9 80743944 80744108 -37118519 - L1MC4 LINE L1 -1077 6965 6793 229 148 49 16 chr9 80744145 80744206 -37118421 + (TA)n Simple_repeat Simple_repeat 1 63 0 21625 186 13 30 chr9 80744285 80750194 -37112433 - L1PA12 LINE L1 -1 7605 997 1801 167 33 38 chr9 80750194 80750560 -37112067 - THE1B LTR MaLR 0 364 1 21625 186 13 30 chr9 80750560 80750760 -37111867 - L1PA12 LINE L1 -6609 997 795 182 366 50 20 chr9 80751252 80751353 -37111274 - MIR SINE MIR -67 141 38 374 257 125 21 chr9 80751494 80751547 -37111080 - MIR SINE MIR -5 257 211 2297 135 8 6 chr9 80751547 80751910 -37110717 + THE1B LTR MaLR 1 364 0 374 257 125 21 chr9 80751910 80752000 -37110627 - MIR SINE MIR -51 211 99 424 304 96 92 chr9 80752119 80752715 -37109912 - L1ME4a LINE L1 -120 6395 5798 2595 241 45 63 chr9 80752715 80754042 -37108585 - L1MDa LINE L1 -2852 3688 2384 446 219 55 0 chr9 80754248 80754376 -37108251 + MER66B LTR ERV1 305 439 -47 2079 183 169 48 chr9 80754523 80754726 -37107901 + MER66-int LTR ERV1 459 636 -6040 2103 119 0 6 chr9 80754726 80755038 -37107589 - AluSx SINE Alu -2 310 1 2079 183 169 48 chr9 80755038 80755419 -37107208 + MER66-int LTR ERV1 636 1114 -5562 470 258 26 77 chr9 80755455 80755649 -37106978 + MER66-int LTR ERV1 2917 3100 -3576 4924 172 38 18 chr9 80755743 80756649 -37105978 + MER66-int LTR ERV1 1212 2135 -4541 3457 266 59 70 chr9 80756655 80758489 -37104138 - L1M4 LINE L1 -1617 4529 2716 222 322 0 0 chr9 80758495 80758554 -37104073 - L2 LINE L2 -18 3254 3196 595 295 59 0 chr9 80759142 80759352 -37103275 + MIR SINE MIR 25 248 -14 418 235 154 22 chr9 80759598 80759827 -37102800 - LTR41 LTR ERVL 0 767 453 429 291 39 11 chr9 80760170 80760349 -37102278 - LTR41 LTR ERVL -588 185 2 207 103 0 26 chr9 80760643 80760682 -37101945 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 224 197 0 15 chr9 80762372 80762438 -37100189 + (TATATG)n Simple_repeat Simple_repeat 4 68 0 342 222 40 36 chr9 80762438 80762575 -37100052 + L1MC4 LINE L1 1978 6998 -1324 490 195 85 8 chr9 80763338 80763456 -37099171 - FLAM_C SINE Alu -16 127 1 219 245 19 0 chr9 80763781 80763834 -37098793 + (CATA)n Simple_repeat Simple_repeat 3 56 0 435 240 189 42 chr9 80763908 80764125 -37098502 - L1ME3A LINE L1 -301 5869 5621 187 401 106 13 chr9 80764163 80764400 -37098227 + L2 LINE L2 1868 2126 -1188 660 278 112 36 chr9 80764404 80764681 -37097946 - MLT1H1 LTR MaLR -4 551 254 424 328 42 44 chr9 80764706 80765139 -37097488 - L1ME3A LINE L1 -747 5399 5111 599 160 72 0 chr9 80765879 80766004 -37096623 - L1MA1 LINE L1 -161 6141 6008 1154 87 0 6 chr9 80766007 80766168 -37096459 + L1MA1 LINE L1 6137 6296 -6 224 330 34 11 chr9 80766618 80766706 -37095921 + MIR SINE MIR 158 247 -15 231 313 12 0 chr9 80768362 80768442 -37094185 - L1ME3A LINE L1 -3379 2767 2687 881 253 190 21 chr9 80768592 80769019 -37093608 - L1MC4 LINE L1 -664 7378 6880 701 335 9 0 chr9 80769465 80769677 -37092950 + MIR SINE MIR 48 261 -1 25 31 0 0 chr9 80769683 80769715 -37092912 + AT_rich Low_complexity Low_complexity 1 32 0 373 299 29 22 chr9 80769749 80769886 -37092741 - L2 LINE L2 0 3313 3176 316 262 136 72 chr9 80769894 80770115 -37092512 - L1ME3A LINE L1 0 6170 5936 373 121 0 0 chr9 80770355 80770413 -37092214 - MLT2A2 LTR ERVL 0 453 396 588 136 0 0 chr9 80770420 80770508 -37092119 - MLT2A2 LTR ERVL -365 88 1 585 272 27 16 chr9 80770508 80770692 -37091935 - L1ME3A LINE L1 -447 5723 5538 244 167 0 74 chr9 80771247 80771301 -37091326 - MLT1J2 LTR MaLR -4 446 397 411 21 0 0 chr9 80771705 80771753 -37090874 + (TG)n Simple_repeat Simple_repeat 2 49 0 22 35 0 0 chr9 80771798 80771827 -37090800 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr9 80772045 80772065 -37090562 + (TC)n Simple_repeat Simple_repeat 1 20 0 315 0 0 0 chr9 80772068 80772103 -37090524 + (TG)n Simple_repeat Simple_repeat 2 36 0 1324 193 73 80 chr9 80772968 80773393 -37089234 - MLT1D LTR MaLR -61 444 23 2510 212 4 2 chr9 80773642 80774166 -37088461 + L1P LINE L1 3926 4450 -1696 1993 123 0 7 chr9 80774349 80774634 -37087993 - AluSx SINE Alu -20 292 10 555 345 6 11 chr9 80774840 80775014 -37087613 + MER5B DNA MER1_type 1 173 -5 23 0 0 0 chr9 80775824 80775847 -37086780 + AT_rich Low_complexity Low_complexity 1 23 0 5904 152 13 32 chr9 80776042 80777108 -37085519 + Tigger1 DNA MER2_type 1 1046 -1372 3791 164 30 17 chr9 80777076 80777776 -37084851 + Tigger1 DNA MER2_type 1710 2418 0 * 657 235 29 49 chr9 80778005 80778060 -37084567 - MER67D LTR ERV1 -9 505 450 1811 171 0 0 chr9 80778060 80778347 -37084280 - AluSx SINE Alu -25 287 1 657 235 29 49 chr9 80778347 80778495 -37084132 - MER67D LTR ERV1 -64 450 306 485 255 0 0 chr9 80778547 80778649 -37083978 - MER67D LTR ERV1 -209 305 204 260 310 14 0 chr9 80778756 80778827 -37083800 - HERVL LTR ERVL -3693 1961 1890 1450 172 39 7 chr9 80778948 80779227 -37083400 - L1MC/D LINE L1 -766 5567 5280 1351 75 43 0 chr9 80779197 80779384 -37083243 - L1PA5 LINE L1 -3 6151 5957 * 757 282 66 0 chr9 80779390 80779631 -37082996 - L1MC/D LINE L1 -833 5313 5057 358 191 0 96 chr9 80779639 80779666 -37082961 + L1M4 LINE L1 4964 4992 -1154 813 153 82 0 chr9 80779666 80779862 -37082765 + L1MA8 LINE L1 6074 6285 -6 358 191 0 96 chr9 80779862 80779949 -37082678 + L1M4 LINE L1 4992 5067 -1079 1964 260 30 7 chr9 80779950 80780507 -37082120 - L1ME1 LINE L1 -20 6146 5577 6464 202 29 6 chr9 80780537 80782762 -37079865 - L1PA15 LINE L1 -2 6163 3903 2624 26 0 0 chr9 80782762 80783068 -37079559 - L1PA3 LINE L1 0 6155 5844 183 80 0 0 chr9 80783171 80783196 -37079431 + (C)n Simple_repeat Simple_repeat 1 25 0 243 164 0 16 chr9 80783361 80783422 -37079205 + L1MA2 LINE L1 6245 6304 0 419 237 10 10 chr9 80783439 80783536 -37079091 - MER7A DNA MER2_type -251 95 1 461 321 92 11 chr9 80783699 80783883 -37078744 + MIR SINE MIR 53 251 -11 991 184 13 43 chr9 80784471 80784705 -37077922 - L1 LINE L1 -996 5150 4924 5704 102 38 6 chr9 80784706 80785855 -37076772 - L1PA13 LINE L1 -3 6160 5026 520 101 56 0 chr9 80785855 80785944 -37076683 + L1PA13 LINE L1 6067 6160 -3 2028 202 7 2 chr9 80785944 80786355 -37076272 - L1PA13 LINE L1 -1119 5027 4615 2066 146 24 0 chr9 80786444 80786773 -37075854 + L1P LINE L1 3638 3974 -2172 186 133 0 0 chr9 80787197 80787227 -37075400 + (CATATA)n Simple_repeat Simple_repeat 5 34 0 225 307 9 9 chr9 80787237 80787351 -37075276 + (TA)n Simple_repeat Simple_repeat 1 114 0 606 169 116 17 chr9 80788393 80788565 -37074062 - MER53 DNA DNA 0 189 1 180 357 80 14 chr9 80788970 80789183 -37073444 - L2 LINE L2 -843 2471 2245 318 80 0 0 chr9 80789201 80789251 -37073376 + (TAGA)n Simple_repeat Simple_repeat 2 51 0 660 367 110 21 chr9 80790418 80791376 -37071251 - L2 LINE L2 -1963 1351 309 24 32 0 0 chr9 80791794 80791825 -37070802 + AT_rich Low_complexity Low_complexity 1 31 0 485 326 14 7 chr9 80792438 80792582 -37070045 - MER5B DNA MER1_type -1 177 33 200 347 72 36 chr9 80792439 80792606 -37070021 + MER5A DNA MER1_type 17 189 0 * 356 393 55 16 chr9 80793464 80793812 -37068815 + MLT1K LTR MaLR 2 414 -174 186 133 0 0 chr9 80793949 80793979 -37068648 + (TCTCC)n Simple_repeat Simple_repeat 1 30 0 1935 146 7 0 chr9 80793979 80794281 -37068346 - AluSx SINE Alu -8 304 1 2724 189 25 25 chr9 80795148 80795612 -37067015 + L1MA7 LINE L1 5662 6128 -163 2032 145 0 0 chr9 80795612 80795922 -37066705 - AluSx SINE Alu -2 310 1 2724 189 25 25 chr9 80795922 80796085 -37066542 + L1MA7 LINE L1 6127 6289 -2 1667 228 42 40 chr9 80796529 80797033 -37065594 + MLT1D LTR MaLR 1 505 0 22 56 0 0 chr9 80797851 80797887 -37064740 + AT_rich Low_complexity Low_complexity 1 36 0 23 68 0 0 chr9 80798132 80798176 -37064451 + AT_rich Low_complexity Low_complexity 1 44 0 2808 16 11 0 chr9 80798816 80799257 -37063370 - L1P1 LINE L1 -649 5506 5061 8325 230 16 40 chr9 80799257 80802378 -37060249 - L1PA13 LINE L1 -2223 5361 2319 384 360 17 28 chr9 80803201 80803554 -37059073 - L1PA13 LINE L1 -7226 355 7 1048 244 4 17 chr9 80803558 80803867 -37058760 - L1M3 LINE L1 -778 5556 5259 498 234 0 0 chr9 80804367 80804495 -37058132 - L1MA7 LINE L1 0 6291 6164 441 275 7 36 chr9 80804540 80804678 -37057949 + LTR27 LTR ERV1 501 634 -2 3434 167 13 18 chr9 80804683 80805382 -37057245 + L1MA8 LINE L1 5221 5917 -374 1904 163 41 32 chr9 80805504 80805969 -37056658 + L1MA8 LINE L1 5819 6287 -4 229 245 85 0 chr9 80806481 80806575 -37056052 + L1PA15-16 LINE L1 2545 2646 -4203 1069 256 68 40 chr9 80806711 80807210 -37055417 + L1MC5 LINE L1 7014 7526 -435 22 0 0 0 chr9 80807223 80807245 -37055382 + AT_rich Low_complexity Low_complexity 1 22 0 485 284 65 5 chr9 80807552 80807753 -37054874 - L1ME LINE L1 -354 5767 5555 3640 221 45 12 chr9 80809312 80810114 -37052513 - L1PA12 LINE L1 -6750 831 4 280 256 54 77 chr9 80810220 80810388 -37052239 - L1MC4a LINE L1 -1340 6468 6305 364 246 184 31 chr9 80810463 80810691 -37051936 - L1MC4a LINE L1 -1633 6175 5913 623 336 101 29 chr9 80810882 80811107 -37051520 - L1ME LINE L1 -2229 3917 3710 1147 174 12 27 chr9 80811107 80811365 -37051262 - L1MA4 LINE L1 -6 6294 6041 623 336 101 29 chr9 80811365 80811871 -37050756 - L1ME LINE L1 -2436 3710 3133 342 283 70 70 chr9 80811940 80812198 -37050429 - L1ME LINE L1 -3114 3032 2775 2244 108 3 0 chr9 80813705 80814011 -37048616 - AluSp SINE Alu -6 307 1 225 0 0 0 chr9 80814077 80814102 -37048525 + (T)n Simple_repeat Simple_repeat 1 25 0 367 322 35 0 chr9 80814174 80814289 -37048338 + L2 LINE L2 2262 2380 -934 314 272 146 13 chr9 80814481 80814639 -37047988 + MIR SINE MIR 28 206 -56 23 33 0 0 chr9 80814779 80814809 -37047818 + AT_rich Low_complexity Low_complexity 1 30 0 1095 160 16 26 chr9 80816049 80816243 -37046384 - MER31A LTR ERV1 -276 209 18 1247 310 92 71 chr9 80816354 80817388 -37045239 + L1MDa LINE L1 1390 2480 -4241 1633 178 0 14 chr9 80817388 80817674 -37044953 + AluSx SINE Alu 1 282 -30 1247 310 92 71 chr9 80817674 80818013 -37044614 + L1MDa LINE L1 2480 2810 -3911 183 290 94 36 chr9 80818974 80819112 -37043515 + MIR SINE MIR 67 212 -50 423 352 33 16 chr9 80819387 80819569 -37043058 - MIR SINE MIR -14 248 64 415 274 89 32 chr9 80819582 80819739 -37042888 + MLT1J LTR MaLR 131 296 -215 1427 124 55 0 chr9 80820039 80820257 -37042370 + MER30 DNA MER1_type 1 230 0 269 327 53 0 chr9 80820486 80820599 -37042028 + L1ME LINE L1 5476 5594 -572 4710 169 15 23 chr9 80820606 80821279 -37041348 - L1PA16 LINE L1 -16 6150 5485 1578 196 7 13 chr9 80821279 80821585 -37041042 - AluJb SINE Alu -5 307 4 4710 169 15 23 chr9 80821585 80821932 -37040695 - L1PA16 LINE L1 -681 5485 5137 3515 207 5 16 chr9 80821919 80822740 -37039887 + L1PA16 LINE L1 4320 5131 -1015 * 558 395 39 11 chr9 80823357 80823739 -37038888 - LTR16C LTR ERVL 0 491 99 576 70 0 0 chr9 80823867 80823953 -37038674 + (TG)n Simple_repeat Simple_repeat 2 87 0 4234 167 26 0 chr9 80825218 80826014 -37036613 - L1MA5 LINE L1 -1 6299 5483 3902 241 22 19 chr9 80826018 80827180 -37035447 - L1PA13 LINE L1 -4361 2436 1264 3690 191 17 38 chr9 80827231 80828260 -37034367 - L1MC/D LINE L1 -743 5403 4530 1517 148 50 73 chr9 80828260 80828644 -37033983 + THE1C LTR MaLR 1 375 0 3690 191 17 38 chr9 80828644 80828674 -37033953 - L1MC/D LINE L1 -1616 4530 4501 4014 197 5 42 chr9 80828677 80829630 -37032997 + L1 LINE L1 3252 4169 -1977 406 129 24 12 chr9 80829644 80829729 -37032898 + GA-rich Low_complexity Low_complexity 1 86 0 1511 189 12 3 chr9 80829734 80830057 -37032570 + L1 LINE L1 4166 4491 -1655 1416 285 110 18 chr9 80830308 80830899 -37031728 + L2 LINE L2 2467 3110 -203 1712 261 40 38 chr9 80830917 80832989 -37029638 - L1ME1 LINE L1 -7 6159 4013 319 287 184 29 chr9 80837164 80837300 -37025327 + MER5A DNA MER1_type 33 189 0 236 339 16 0 chr9 80837477 80837539 -37025088 + L2 LINE L2 3195 3257 -15 25 0 0 0 chr9 80837802 80837827 -37024800 + AT_rich Low_complexity Low_complexity 1 25 0 383 216 31 21 chr9 80838690 80838787 -37023840 - LTR33 LTR ERVL 0 521 424 341 234 0 0 chr9 80838944 80839008 -37023619 - MER20 DNA MER1_type -155 64 1 5456 38 0 3 chr9 80839824 80840486 -37022141 - L1PA4 LINE L1 0 6155 5496 25 0 0 0 chr9 80840803 80840828 -37021799 + AT_rich Low_complexity Low_complexity 1 25 0 194 287 92 46 chr9 80841197 80841284 -37021343 - MIR SINE MIR -95 113 23 2110 123 3 0 chr9 80841761 80842054 -37020573 - AluSg SINE Alu -16 294 1 14204 68 7 1 chr9 80842223 80844891 -37017736 - L1PA6 LINE L1 -2 6152 3475 19775 122 13 11 chr9 80844900 80847984 -37014643 - L1PA6 LINE L1 -3047 3099 11 267 311 76 49 chr9 80848035 80848260 -37014367 - L2 LINE L2 -4 3309 3079 662 316 66 35 chr9 80848796 80849144 -37013483 + L2 LINE L2 2954 3312 -1 22 0 0 0 chr9 80849779 80849801 -37012826 + AT_rich Low_complexity Low_complexity 1 22 0 2131 225 9 69 chr9 80850120 80850380 -37012247 + MLT1F LTR MaLR 1 208 -334 1475 247 40 3 chr9 80850380 80850732 -37011895 - MLT1A1 LTR MaLR 0 365 1 2131 225 9 69 chr9 80850732 80851048 -37011579 + MLT1F LTR MaLR 208 542 0 252 353 46 11 chr9 80851112 80851277 -37011350 - MIR SINE MIR -75 187 20 189 143 32 32 chr9 80851400 80851463 -37011164 + CT-rich Low_complexity Low_complexity 2 64 0 23 54 0 0 chr9 80852332 80852369 -37010258 + AT_rich Low_complexity Low_complexity 1 37 0 1733 331 99 34 chr9 80853324 80853662 -37008965 + L2 LINE L2 1497 1812 -1501 2140 127 0 6 chr9 80853662 80853976 -37008651 - AluSx SINE Alu 0 312 1 1733 331 99 34 chr9 80853976 80854089 -37008538 + L2 LINE L2 1812 1916 -1397 1962 142 0 3 chr9 80854089 80854392 -37008235 - AluSx SINE Alu -8 304 3 1733 331 99 34 chr9 80854392 80855397 -37007230 + L2 LINE L2 1916 3042 -271 2336 80 3 6 chr9 80855554 80855865 -37006762 + AluY SINE Alu 1 310 -1 213 264 57 0 chr9 80855928 80855981 -37006646 + L2 LINE L2 3258 3313 0 921 200 55 5 chr9 80857102 80857302 -37005325 + L1PB4 LINE L1 5947 6156 0 221 245 0 20 chr9 80857792 80857841 -37004786 + (TG)n Simple_repeat Simple_repeat 1 48 0 1739 195 40 73 chr9 80857852 80858330 -37004297 - MLT1C LTR MaLR 0 467 6 229 211 39 0 chr9 80859158 80859210 -37003417 - L2 LINE L2 -2 3270 3217 2036 86 0 0 chr9 80859520 80859777 -37002850 + AluSg SINE Alu 53 309 -1 37 0 0 0 chr9 80859878 80859915 -37002712 + AT_rich Low_complexity Low_complexity 1 37 0 50 59 0 0 chr9 80860285 80860370 -37002257 + AT_rich Low_complexity Low_complexity 1 85 0 224 100 25 0 chr9 80861125 80861165 -37001462 + (TA)n Simple_repeat Simple_repeat 1 41 0 763 201 71 7 chr9 80862016 80862299 -37000328 - L1 LINE L1 -2754 3392 3092 * 967 247 59 7 chr9 80862297 80862601 -37000026 + L1 LINE L1 2759 3078 -3068 21 0 0 0 chr9 80863782 80863803 -36998824 + AT_rich Low_complexity Low_complexity 1 21 0 319 363 76 30 chr9 80865013 80865223 -36997404 - L2 LINE L2 -15 3257 3027 1673 233 73 21 chr9 80865223 80865703 -36996924 - MLT1D LTR MaLR 0 505 1 319 363 76 30 chr9 80865703 80865795 -36996832 - L2 LINE L2 -245 3027 2941 330 269 0 0 chr9 80865978 80866056 -36996571 - MIR SINE MIR -27 235 158 405 0 0 0 chr9 80866070 80866115 -36996512 + (CA)n Simple_repeat Simple_repeat 2 46 0 743 266 11 103 chr9 80866115 80866494 -36996133 - MLT2C1 LTR ERVL -41 356 13 1848 134 10 29 chr9 80867085 80867398 -36995229 - AluSx SINE Alu -3 309 3 260 252 28 91 chr9 80867541 80867684 -36994943 - LTR67 LTR ERVL -17 540 407 1756 243 74 51 chr9 80867851 80868459 -36994168 - MLT1E3 LTR MaLR -2 622 1 560 229 82 32 chr9 80869737 80870032 -36992595 + L1MC3 LINE L1 1452 1897 -4529 * 4178 150 48 13 chr9 80870028 80870832 -36991795 - L1MA5A LINE L1 -255 6042 5211 1596 102 4 0 chr9 80870833 80871068 -36991559 + L1MA5A LINE L1 6050 6285 -12 922 225 149 8 chr9 80871078 80871433 -36991194 + L1MC3 LINE L1 1809 2213 -4213 553 245 19 0 chr9 80871471 80871626 -36991001 + L1MC3 LINE L1 2487 2644 -3782 1769 236 80 51 chr9 80871627 80872176 -36990451 + LTR48B LTR ERV1 1 572 -72 7845 13 0 0 chr9 80872176 80873139 -36989488 - L1PA3 LINE L1 0 6155 5193 1769 236 80 51 chr9 80873139 80873215 -36989412 + LTR48B LTR ERV1 572 644 0 954 290 81 51 chr9 80873217 80873979 -36988648 + L1MC3 LINE L1 2644 3428 -2998 3541 263 108 14 chr9 80874020 80875536 -36987091 + L1MC3 LINE L1 3838 5495 -931 1005 178 67 14 chr9 80875548 80875756 -36986871 + L1MC3 LINE L1 5682 5900 -2165 35 54 0 0 chr9 80875757 80875813 -36986814 + AT_rich Low_complexity Low_complexity 1 56 0 657 220 39 69 chr9 80875814 80876114 -36986513 + L1MC3 LINE L1 6071 7276 -789 278 233 78 62 chr9 80877135 80877264 -36985363 + MLT1I LTR MaLR 1 131 -278 250 195 117 26 chr9 80877587 80877664 -36984963 + MLT-int LTR MaLR 3 86 -1649 238 286 39 0 chr9 80878759 80878836 -36983791 + MLT1G LTR MaLR 495 574 -16 21 0 0 0 chr9 80878965 80878986 -36983641 + AT_rich Low_complexity Low_complexity 1 21 0 260 378 9 0 chr9 80879445 80879556 -36983071 + L3 LINE CR1 1401 1512 -65 189 316 114 0 chr9 80879812 80879891 -36982736 - L2 LINE L2 -53 3219 3132 727 313 63 19 chr9 80880376 80880692 -36981935 + LTR16A LTR ERVL 121 450 0 432 289 91 19 chr9 80880702 80880910 -36981717 + HERV16 LTR ERVL 12 234 -4762 998 329 31 26 chr9 80880975 80881400 -36981227 + HERV16 LTR ERVL 382 808 -4188 447 306 15 0 chr9 80881588 80881722 -36980905 + HERV16 LTR ERVL 999 1134 -3862 729 343 41 37 chr9 80882223 80882734 -36979893 + HERVL LTR ERVL 4170 4682 -972 311 235 31 0 chr9 80882823 80882921 -36979706 - MER53 DNA DNA -88 101 1 442 267 36 30 chr9 80882923 80883088 -36979539 + LTR16A LTR ERVL 284 449 -1 194 172 0 0 chr9 80883399 80883428 -36979199 - L3 LINE CR1 -7 1570 1542 6817 173 28 28 chr9 80884766 80887047 -36975580 + L1MA8 LINE L1 3980 6267 -24 35 41 0 0 chr9 80887055 80887104 -36975523 + AT_rich Low_complexity Low_complexity 1 49 0 501 343 84 40 chr9 80887253 80887658 -36974969 + L1MEd LINE L1 248 670 -5449 21 0 0 0 chr9 80887877 80887898 -36974729 + AT_rich Low_complexity Low_complexity 1 21 0 249 294 168 0 chr9 80887948 80888067 -36974560 + L2 LINE L2 3134 3272 0 342 334 24 8 chr9 80888298 80888441 -36974186 - MLT1J2 LTR MaLR -236 210 66 311 261 102 76 chr9 80889419 80889599 -36973028 + MIR SINE MIR 12 196 -61 325 165 15 18 chr9 80890166 80890244 -36972383 - MLT1C LTR MaLR 0 467 315 521 119 0 119 chr9 80890244 80890362 -36972265 - L1P5 LINE L1 -565 7029 6926 12221 257 23 14 chr9 80890398 80891167 -36971460 - L1P5 LINE L1 -937 6647 5887 405 0 0 0 chr9 80891167 80891212 -36971415 + (TG)n Simple_repeat Simple_repeat 2 46 0 12221 257 23 14 chr9 80891212 80894572 -36968055 - L1P5 LINE L1 -1697 5887 2461 442 102 5 70 chr9 80894573 80894759 -36967868 + (TA)n Simple_repeat Simple_repeat 2 175 0 225 147 0 40 chr9 80894785 80894860 -36967767 + (TA)n Simple_repeat Simple_repeat 2 73 0 279 221 26 13 chr9 80894887 80894964 -36967663 + (TATATG)n Simple_repeat Simple_repeat 6 83 0 1437 182 0 71 chr9 80894964 80895260 -36967367 - AluJb SINE Alu -32 280 6 439 312 20 15 chr9 80895273 80895475 -36967152 - L1P5 LINE L1 -5146 2435 2233 200 83 0 28 chr9 80896238 80896274 -36966353 + (TAA)n Simple_repeat Simple_repeat 2 36 0 642 217 26 13 chr9 80896670 80896822 -36965805 - LTR33 LTR ERVL 0 521 368 418 332 56 5 chr9 80896928 80897124 -36965503 - ERVL LTR ERVL -501 5263 5058 284 326 11 0 chr9 80897515 80897607 -36965020 + CT-rich Low_complexity Low_complexity 2 94 0 829 335 78 10 chr9 80898015 80898400 -36964227 - LTR33 LTR ERVL -110 411 1 357 274 45 90 chr9 80898553 80898754 -36963873 + HAL1 LINE L1 1846 2037 -470 202 222 0 0 chr9 80898810 80898846 -36963781 + (CA)n Simple_repeat Simple_repeat 2 37 0 3814 158 34 58 chr9 80898906 80899515 -36963112 - LTR1 LTR ERV1 0 785 162 201 39 0 0 chr9 80899515 80899541 -36963086 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 6869 55 21 13 chr9 80899545 80900513 -36962114 - L1PA7 LINE L1 -16 6138 5166 3814 158 34 58 chr9 80900513 80900703 -36961924 - LTR1 LTR ERV1 -626 159 1 254 352 14 14 chr9 80901912 80901983 -36960644 - L2 LINE L2 -49 3223 3153 362 283 28 38 chr9 80902476 80902506 -36960121 - MER81 DNA DNA -4 110 81 480 127 0 100 chr9 80902506 80902616 -36960011 - L1PA11 LINE L1 0 6174 6076 362 283 28 38 chr9 80902616 80902691 -36959936 - MER81 DNA DNA -33 81 6 1593 61 5 14 chr9 80903188 80903400 -36959227 - L1PA7 LINE L1 -3 6151 5942 489 72 2 0 chr9 80903400 80903474 -36959153 + L1PA7 LINE L1 5876 5940 -214 314 378 30 12 chr9 80903539 80903703 -36958924 - L1ME LINE L1 -470 5651 5485 334 143 11 77 chr9 80905076 80905104 -36957523 + L1MD3 LINE L1 7911 7939 -56 2156 141 12 3 chr9 80905104 80905444 -36957183 - MER61A LTR ERV1 0 343 1 334 143 11 77 chr9 80905444 80905506 -36957121 + L1MD3 LINE L1 7939 7995 0 277 192 0 0 chr9 80905653 80905705 -36956922 - Alu SINE Alu 0 308 257 1583 154 28 82 chr9 80905930 80906249 -36956378 + AluJo SINE Alu 1 302 -10 2811 118 2 2 chr9 80906642 80907067 -36955560 - L1P LINE L1 -1654 4492 4068 3324 58 0 5 chr9 80907087 80907514 -36955113 - L1PA5 LINE L1 -6 6148 5724 25386 50 5 4 chr9 80907516 80911592 -36951035 - L1PA5 LINE L1 -5 6149 2073 14154 101 11 1 chr9 80911588 80913565 -36949062 + L1PA5 LINE L1 67 2063 -4083 * 2508 150 7 0 chr9 80913564 80913983 -36948644 - L1P LINE L1 -2062 4084 3663 * 6008 90 14 33 chr9 80913985 80915659 -36946968 + L1PA8 LINE L1 4507 6168 -4 521 207 0 0 chr9 80915781 80915868 -36946759 - AluS SINE Alu -223 90 4 1353 182 80 22 chr9 80915989 80916264 -36946363 + MSTA LTR MaLR 138 428 0 2138 128 6 0 chr9 80916266 80916587 -36946040 + MSTA-int LTR MaLR 3 325 -1255 2458 134 45 23 chr9 80916588 80916893 -36945734 + MSTA-int LTR MaLR 1131 1451 -129 2228 116 3 0 chr9 80916893 80917195 -36945432 - AluSc SINE Alu -6 303 1 2458 134 45 23 chr9 80917195 80917329 -36945298 + MSTA-int LTR MaLR 1451 1580 0 1862 149 149 11 chr9 80917329 80917705 -36944922 + MSTA LTR MaLR 1 428 0 563 234 39 19 chr9 80917705 80917859 -36944768 + MIR SINE MIR 106 262 0 2023 242 69 41 chr9 80917945 80918867 -36943760 - L1ME1 LINE L1 -26 6534 5596 922 255 71 12 chr9 80918864 80919272 -36943355 - L1ME1 LINE L1 -1308 5232 4801 * 295 207 61 24 chr9 80919338 80919447 -36943180 - L1ME1 LINE L1 -5290 1240 1114 1709 284 56 28 chr9 80920343 80920918 -36941709 - MLT1E LTR MaLR 0 593 3 307 213 16 0 chr9 80921849 80921910 -36940717 + MLT1J2 LTR MaLR 102 163 -287 358 291 71 60 chr9 80921960 80922142 -36940485 + MLT1J2 LTR MaLR 267 450 0 258 203 29 0 chr9 80923555 80923624 -36939003 + L1MC5 LINE L1 7831 7901 -60 405 0 0 0 chr9 80923630 80923675 -36938952 + (TTCC)n Simple_repeat Simple_repeat 3 47 0 1911 155 0 20 chr9 80923675 80923979 -36938648 - AluSx SINE Alu -14 298 1 327 351 55 5 chr9 80924026 80924228 -36938399 - L2 LINE L2 -631 2683 2472 316 344 53 56 chr9 80925007 80925205 -36937422 + L2 LINE L2 3027 3225 -88 1849 157 32 32 chr9 80925205 80925580 -36937047 - THE1C LTR MaLR 0 375 1 316 344 53 56 chr9 80925580 80925666 -36936961 + L2 LINE L2 3225 3310 -3 21 0 0 0 chr9 80926408 80926429 -36936198 + AT_rich Low_complexity Low_complexity 1 21 0 1575 200 91 44 chr9 80926797 80927202 -36935425 + MER54B LTR ERVL 370 793 0 24 0 0 0 chr9 80927547 80927571 -36935056 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr9 80927840 80927869 -36934758 + AT_rich Low_complexity Low_complexity 1 29 0 2013 184 55 8 chr9 80927897 80928374 -36934253 - L1MA9 LINE L1 0 6312 5814 42295 37 22 1 chr9 80928432 80934452 -36928175 - L1PA3 LINE L1 0 6155 7 3548 193 16 78 chr9 80934460 80935818 -36926809 - L1MA9 LINE L1 -480 5832 4518 235 205 0 103 chr9 80935818 80935896 -36926731 - AluJ/FRAM SINE Alu -2 300 231 3548 193 16 78 chr9 80935896 80936022 -36926605 - L1MA9 LINE L1 -1794 4518 4386 1145 247 7 18 chr9 80936023 80936302 -36926325 + AluJo SINE Alu 1 276 -36 21 57 0 0 chr9 80936307 80936342 -36926285 + AT_rich Low_complexity Low_complexity 1 35 0 8066 206 50 19 chr9 80936380 80938429 -36924198 - L1MA9 LINE L1 -1821 4325 2214 472 347 121 64 chr9 80939074 80940269 -36922358 - L3 LINE CR1 -71 1506 243 2449 110 16 11 chr9 80941138 80941511 -36921116 - THE1C LTR MaLR 0 375 1 6184 137 5 4 chr9 80941511 80942438 -36920189 - THE1C-int LTR MaLR 0 1580 653 667 150 9 18 chr9 80942438 80942551 -36920076 - THE1B LTR MaLR -252 112 1 741 304 20 20 chr9 80942623 80942870 -36919757 - MIR SINE MIR -1 261 15 399 278 223 13 chr9 80945456 80945841 -36916786 + L1M4 LINE L1 2915 3380 -2766 982 268 0 15 chr9 80945993 80946265 -36916362 + MER93b LTR ERV1 106 373 0 26 30 0 0 chr9 80946318 80946351 -36916276 + AT_rich Low_complexity Low_complexity 1 33 0 21 71 0 0 chr9 80946420 80946462 -36916165 + AT_rich Low_complexity Low_complexity 1 42 0 333 306 50 15 chr9 80946496 80946695 -36915932 + L1M4 LINE L1 3739 3944 -2202 333 331 68 0 chr9 80947070 80947321 -36915306 + L1M4 LINE L1 4258 4525 -1621 321 305 172 0 chr9 80947352 80947526 -36915101 + L1M4 LINE L1 5106 5309 -837 258 313 35 9 chr9 80947566 80947776 -36914851 + L1P5 LINE L1 5353 5565 -609 1458 197 0 53 chr9 80948965 80949264 -36913363 - AluJb SINE Alu -29 283 1 29 28 0 0 chr9 80949491 80949527 -36913100 + AT_rich Low_complexity Low_complexity 1 36 0 2818 147 12 14 chr9 80949600 80949772 -36912855 - L1MA6 LINE L1 0 7321 7150 1849 171 45 3 chr9 80949772 80950106 -36912521 - MER7A DNA MER2_type 0 346 1 2818 147 12 14 chr9 80950106 80950442 -36912185 - L1MA6 LINE L1 -171 7150 6814 192 163 0 0 chr9 80950442 80950485 -36912142 + T-rich Low_complexity Low_complexity 1 43 0 7284 47 17 0 chr9 80950488 80951639 -36910988 - L1PA5 LINE L1 -1 6153 4994 1784 43 17 0 chr9 80951639 80951870 -36910757 + L1P LINE L1 4285 4519 -1627 * 18977 48 3 1 chr9 80951869 80955337 -36907290 - L1PA5 LINE L1 -2482 3664 1 1644 140 7 33 chr9 80955335 80955642 -36906985 - L1MA6 LINE L1 -527 6794 6496 * 6186 199 24 5 chr9 80955613 80956942 -36905685 - L1MA6 LINE L1 -992 6175 4821 * 7982 202 89 85 chr9 80956939 80959229 -36903398 - L1MA6 LINE L1 -4823 2345 29 296 250 29 22 chr9 80960264 80960400 -36902227 + (TA)n Simple_repeat Simple_repeat 1 137 0 278 115 19 0 chr9 80961303 80961355 -36901272 + (TG)n Simple_repeat Simple_repeat 1 53 0 371 333 149 37 chr9 80961429 80961994 -36900633 + L2 LINE L2 499 1126 -2188 604 300 71 37 chr9 80962015 80962127 -36900500 + L2 LINE L2 1598 1705 -1609 2375 80 0 0 chr9 80962127 80962438 -36900189 + AluY SINE Alu 1 311 0 604 300 71 37 chr9 80962438 80962732 -36899895 + L2 LINE L2 1705 2018 -1296 558 319 13 68 chr9 80963190 80963497 -36899130 + L2 LINE L2 2031 2320 -994 562 276 61 25 chr9 80963642 80963838 -36898789 - MIR SINE MIR -56 206 4 213 269 0 0 chr9 80964415 80964493 -36898134 + CT-rich Low_complexity Low_complexity 2 79 0 4144 105 5 7 chr9 80964743 80965363 -36897264 - L1P LINE L1 -1045 5101 4483 29 60 0 0 chr9 80965699 80965749 -36896878 + AT_rich Low_complexity Low_complexity 1 50 0 211 316 43 43 chr9 80967870 80967987 -36894640 + MIR3 SINE MIR 84 200 -8 9312 228 31 24 chr9 80968117 80970717 -36891910 - L1MC3 LINE L1 -8 7777 5160 666 58 0 0 chr9 80970752 80970839 -36891788 - L1PA5 LINE L1 -6 6148 6062 624 246 18 0 chr9 80970839 80971115 -36891512 - L1MC3 LINE L1 -1201 4945 4572 261 0 0 0 chr9 80972097 80972126 -36890501 + (CA)n Simple_repeat Simple_repeat 2 30 0 489 309 96 39 chr9 80972821 80973051 -36889576 + MIR SINE MIR 14 256 -6 27 29 0 0 chr9 80973190 80973224 -36889403 + AT_rich Low_complexity Low_complexity 1 34 0 25 31 0 0 chr9 80973260 80973292 -36889335 + AT_rich Low_complexity Low_complexity 1 32 0 326 113 0 16 chr9 80973685 80973747 -36888880 + (CA)n Simple_repeat Simple_repeat 2 62 0 500 252 24 8 chr9 80973813 80973940 -36888687 + MER94 DNA DNA 6 134 0 251 331 145 0 chr9 80974008 80974174 -36888453 + MIR SINE MIR 51 240 -22 326 90 60 0 chr9 80974740 80974807 -36887820 + L1MB3 LINE L1 6110 6180 -3 306 372 131 22 chr9 80975026 80975338 -36887289 - L3 LINE CR1 -6 1571 1226 246 384 45 0 chr9 80975409 80975521 -36887106 - L3 LINE CR1 -477 1100 984 221 313 89 0 chr9 80976218 80976330 -36886297 + MIR3 SINE MIR 85 206 -2 461 301 6 0 chr9 80976759 80976932 -36885695 - L1MC3 LINE L1 -2124 4022 3849 25 0 0 0 chr9 80976950 80976975 -36885652 + AT_rich Low_complexity Low_complexity 1 25 0 306 217 76 0 chr9 80976975 80977067 -36885560 - L1MA7 LINE L1 0 6291 6193 538 168 119 0 chr9 80977300 80977443 -36885184 - L1MC3 LINE L1 -10 7775 7616 1078 285 50 12 chr9 80977855 80978259 -36884368 + L1ME3A LINE L1 5410 5828 -342 699 129 9 0 chr9 80978421 80978537 -36884090 - L1M2 LINE L1 -800 5491 5375 * 3378 185 34 37 chr9 80978534 80979298 -36883329 + L1MA7 LINE L1 5529 6290 -1 2255 95 7 0 chr9 80979310 80979605 -36883022 + AluSg SINE Alu 1 297 -13 239 264 8 50 chr9 80979636 80979757 -36882870 - L1MC3 LINE L1 -3395 2751 2636 1478 162 70 3 chr9 80979757 80980041 -36882586 + L1PA15 LINE L1 5857 6159 -6 657 313 40 18 chr9 80980053 80980328 -36882299 + L1ME3A LINE L1 5862 6142 -28 2555 50 0 0 chr9 80980920 80981222 -36881405 + AluY SINE Alu 1 302 -9 297 134 104 30 chr9 80981512 80981579 -36881048 - MLT1H LTR MaLR -16 533 462 312 27 0 0 chr9 80982158 80982195 -36880432 + (TG)n Simple_repeat Simple_repeat 1 37 0 231 325 13 0 chr9 80984463 80984540 -36878087 - MLT1K LTR MaLR -497 91 14 1271 212 81 36 chr9 80985240 80985598 -36877029 + MLT1A2 LTR MaLR 1 374 0 1557 169 166 0 chr9 80985679 80985993 -36876634 - MER47A DNA MER2_type 0 366 1 582 335 64 0 chr9 80988922 80989140 -36873487 + MIR SINE MIR 31 262 0 21 36 0 0 chr9 80989223 80989251 -36873376 + AT_rich Low_complexity Low_complexity 1 28 0 208 321 114 21 chr9 80990009 80990149 -36872478 + L2 LINE L2 3161 3313 0 314 290 176 36 chr9 80990501 80990780 -36871847 - L1ME4a LINE L1 -139 5982 5665 42110 38 23 1 chr9 80991231 80997023 -36865604 - L1PA3 LINE L1 -224 5931 11 375 304 114 11 chr9 80997083 80997267 -36865360 + MIR SINE MIR 60 262 0 208 100 50 0 chr9 80997451 80997491 -36865136 + T-rich Low_complexity Low_complexity 1 42 0 278 263 94 81 chr9 80998576 80998736 -36863891 + L2 LINE L2 3151 3312 -1 321 321 93 55 chr9 80999741 81000192 -36862435 + L2 LINE L2 2818 3285 -28 188 132 0 79 chr9 81000167 81000205 -36862422 + MIR SINE MIR 216 250 -12 * 2154 125 7 0 chr9 81000609 81000912 -36861715 - AluSq SINE Alu -8 305 1 23 54 0 0 chr9 81001019 81001056 -36861571 + AT_rich Low_complexity Low_complexity 1 37 0 455 348 57 20 chr9 81001955 81002202 -36860425 + L2 LINE L2 2461 2716 -598 358 316 97 13 chr9 81002358 81002513 -36860114 - MIR SINE MIR -70 192 25 209 347 98 53 chr9 81004593 81004818 -36857809 + L2 LINE L2 2701 2935 -379 2143 187 80 7 chr9 81005126 81005587 -36857040 - LTR1B LTR ERV1 0 826 332 296 182 0 30 chr9 81005631 81005697 -36856930 - LTR1 LTR ERV1 -543 242 179 25 51 0 0 chr9 81005902 81005941 -36856686 + AT_rich Low_complexity Low_complexity 1 39 0 1579 154 51 20 chr9 81007036 81007329 -36855298 + AluSx SINE Alu 1 302 -10 228 220 110 46 chr9 81007937 81008046 -36854581 - L1M4 LINE L1 -2314 3832 3717 2171 252 93 24 chr9 81008207 81008276 -36854351 - L1ME1 LINE L1 -1 6165 6102 1356 192 38 34 chr9 81008276 81008567 -36854060 + AluJb SINE Alu 1 292 -20 2171 252 93 24 chr9 81008567 81009482 -36853145 - L1ME1 LINE L1 -64 6102 5112 1912 118 28 3 chr9 81009487 81009774 -36852853 - AluSp SINE Alu -4 309 16 1371 157 5 5 chr9 81009797 81010013 -36852614 - AluSx SINE Alu -96 216 1 22 35 0 0 chr9 81010013 81010042 -36852585 + AT_rich Low_complexity Low_complexity 1 29 0 595 297 81 61 chr9 81010083 81010527 -36852100 - L1MEc LINE L1 -5907 489 37 1379 192 7 42 chr9 81010614 81010922 -36851705 + MER101B LTR ERV1 8 304 -266 534 291 5 51 chr9 81010926 81011122 -36851505 + MER101 LTR ERV1 259 445 -29 256 278 14 0 chr9 81011618 81011690 -36850937 + LOR1-int LTR ERV1 842 914 -5417 745 250 21 38 chr9 81011690 81011926 -36850701 + LOR1-int LTR ERV1 1158 1389 -4942 507 218 30 61 chr9 81012041 81012206 -36850421 + LOR1-int LTR ERV1 1372 1531 -4800 2010 118 21 0 chr9 81012233 81012512 -36850115 + AluSg SINE Alu 1 285 -25 456 218 12 18 chr9 81012512 81012677 -36849950 + (TA)n Simple_repeat Simple_repeat 1 164 0 225 294 35 0 chr9 81012818 81012903 -36849724 - L1MC4 LINE L1 -1340 6702 6615 * 250 284 23 0 chr9 81012852 81012940 -36849687 + L1MC4 LINE L1 6614 6703 -1339 531 252 57 13 chr9 81013026 81013185 -36849442 + LOR1-int LTR ERV1 838 1003 -4120 343 282 264 6 chr9 81013190 81013364 -36849263 + MER34C LTR ERV1 172 390 -195 972 177 26 113 chr9 81013364 81013915 -36848712 + LOR1-int LTR ERV1 1191 3269 -2863 283 234 31 0 chr9 81013977 81014041 -36848586 + LOR1-int LTR ERV1 3275 3340 -2991 520 211 0 0 chr9 81014090 81014185 -36848442 + LOR1-int LTR ERV1 3353 3447 -2884 1960 215 42 48 chr9 81014323 81015118 -36847509 + LOR1-int LTR ERV1 1721 2573 -2550 265 250 45 34 chr9 81015105 81015193 -36847434 + LOR1-int LTR ERV1 2469 2557 -2379 * 1622 207 66 31 chr9 81015196 81015468 -36847159 + LOR1-int LTR ERV1 3077 3042 -1894 1944 115 0 4 chr9 81015468 81015747 -36846880 - AluSc SINE Alu -31 278 1 1622 207 66 31 chr9 81015747 81015951 -36846676 + LOR1-int LTR ERV1 3041 3236 -1700 504 313 0 0 chr9 81016173 81016307 -36846320 + LOR1-int LTR ERV1 6963 7096 -1024 1286 228 126 47 chr9 81016318 81016787 -36845840 + MER101B LTR ERV1 14 519 -51 236 208 50 79 chr9 81016705 81016806 -36845821 - LTR40a LTR ERVL -353 166 69 * 388 294 68 68 chr9 81016903 81017257 -36845370 - L1M4 LINE L1 -2760 3386 3033 229 313 84 56 chr9 81018863 81019042 -36843585 - HsTC2 DNA Tc2 -1714 184 1 1860 154 43 56 chr9 81019752 81020147 -36842480 - MLT1B LTR MaLR 0 390 1 338 351 12 24 chr9 81020274 81020439 -36842188 + MLT1K LTR MaLR 129 291 -297 296 247 59 0 chr9 81020688 81020773 -36841854 - MLT1J2 LTR MaLR -288 162 73 29 28 0 0 chr9 81021029 81021065 -36841562 + AT_rich Low_complexity Low_complexity 1 36 0 26 82 0 0 chr9 81021123 81021184 -36841443 + AT_rich Low_complexity Low_complexity 1 61 0 2254 76 3 7 chr9 81021732 81022034 -36840593 + AluY SINE Alu 1 301 -10 2222 87 7 7 chr9 81022062 81022371 -36840256 + AluSc SINE Alu 1 309 0 1768 206 54 64 chr9 81022604 81023105 -36839522 + MER68 LTR ERV1 1 496 -66 21 36 0 0 chr9 81023322 81023350 -36839277 + AT_rich Low_complexity Low_complexity 1 28 0 464 273 57 54 chr9 81023572 81023890 -36838737 + L1MDb LINE L1 1056 1375 -5021 497 250 43 62 chr9 81024264 81024472 -36838155 + LTR33 LTR ERVL 298 501 -20 181 286 0 0 chr9 81024746 81024795 -36837832 + L2 LINE L2 3262 3310 -3 360 299 88 58 chr9 81025241 81025502 -36837125 - L1M4 LINE L1 -2253 3893 3625 608 309 70 9 chr9 81025685 81025915 -36836712 + L2 LINE L2 2432 2675 -639 253 182 0 148 chr9 81026035 81026123 -36836504 + MLT1I LTR MaLR 103 177 -232 28 48 0 0 chr9 81026919 81026961 -36835666 + AT_rich Low_complexity Low_complexity 1 42 0 341 155 99 0 chr9 81026989 81027060 -36835567 + L1MA4 LINE L1 6163 6240 -60 524 291 33 83 chr9 81027813 81028174 -36834453 + L1ME LINE L1 276 618 -5452 1896 177 22 50 chr9 81028919 81029010 -36833617 + MLT1B LTR MaLR 1 93 -297 1816 145 7 7 chr9 81029010 81029319 -36833308 - AluSx SINE Alu 0 309 1 1896 177 22 50 chr9 81029319 81029574 -36833053 + MLT1B LTR MaLR 93 338 -52 4688 116 18 7 chr9 81029574 81030258 -36832369 - LTR8 LTR ERV1 0 691 1 1896 177 22 50 chr9 81030258 81030310 -36832317 + MLT1B LTR MaLR 338 390 0 2028 132 6 28 chr9 81030404 81030723 -36831904 + AluSq SINE Alu 1 312 -1 2102 42 4 0 chr9 81030872 81031135 -36831492 - L1PA3 LINE L1 -1 6154 5891 225 226 0 32 chr9 81131241 81131303 -36731324 + L1ME4a LINE L1 5988 6047 -74 218 245 53 75 chr9 81132216 81132310 -36730317 - MIR SINE MIR -106 156 65 287 318 24 0 chr9 81132706 81132791 -36729836 + MIR SINE MIR 61 147 -115 186 279 44 44 chr9 81132865 81132933 -36729694 + MIR3 SINE MIR 109 176 -32 254 182 26 26 chr9 81133158 81133235 -36729392 + C-rich Low_complexity Low_complexity 4 80 0 29 98 0 0 chr9 81133245 81133306 -36729321 + GC_rich Low_complexity Low_complexity 1 61 0 467 189 0 9 chr9 81133703 81133721 -36728906 + CT-rich Low_complexity Low_complexity 4 21 -92 2040 149 7 79 chr9 81133721 81134150 -36728477 - L1PA16 LINE L1 -4 6162 5765 467 189 0 9 chr9 81134150 81134242 -36728385 + CT-rich Low_complexity Low_complexity 21 113 0 1599 171 4 7 chr9 81134245 81134526 -36728101 - AluJb SINE Alu -32 280 1 3048 91 48 2 chr9 81134527 81134967 -36727660 - L1PA16 LINE L1 -381 5785 5326 * 3176 189 47 22 chr9 81134966 81135692 -36726935 + L1 LINE L1 3672 4415 -1731 872 166 21 52 chr9 81135705 81135898 -36726729 + MER5A DNA MER1_type 1 187 -2 416 268 26 17 chr9 81135944 81136079 -36726548 - MIR SINE MIR -69 139 19 301 164 49 16 chr9 81136078 81136139 -36726488 - L2 LINE L2 -1 3312 3250 * 384 181 26 78 chr9 81136139 81136255 -36726372 - LTR67 LTR ERVL -59 498 389 405 296 207 17 chr9 81136291 81136470 -36726157 - LTR67 LTR ERVL -339 218 6 1700 139 3 27 chr9 81136588 81136889 -36725738 - AluSx SINE Alu -18 294 1 740 246 53 6 chr9 81136889 81137060 -36725567 + MLT1K LTR MaLR 249 427 -161 1972 111 0 24 chr9 81137301 81137598 -36725029 + AluSx SINE Alu 1 290 -22 1214 176 0 18 chr9 81137670 81137897 -36724730 - AluSg/x SINE Alu -5 307 85 310 182 40 40 chr9 81138127 81138226 -36724401 - L1ME4a LINE L1 -55 6066 5968 24 39 0 0 chr9 81138545 81138571 -36724056 + AT_rich Low_complexity Low_complexity 1 26 0 359 261 219 17 chr9 81138694 81138813 -36723814 + MER5B DNA MER1_type 36 178 0 2020 103 0 26 chr9 81139349 81139659 -36722968 - AluSx SINE Alu -10 302 1 604 315 83 64 chr9 81139876 81139986 -36722641 - L1MEc LINE L1 -3992 2404 2298 2002 122 0 7 chr9 81139986 81140280 -36722347 + AluSx SINE Alu 1 292 -20 604 315 83 64 chr9 81140280 81140651 -36721976 - L1MEc LINE L1 -4098 2298 1914 381 254 101 47 chr9 81140707 81141025 -36721602 - L1MEc LINE L1 -861 1715 1534 308 259 37 12 chr9 81141027 81141108 -36721519 - L1MEc LINE L1 -5251 954 872 308 253 13 97 chr9 81141137 81141184 -36721443 - L1MEc LINE L1 -5977 228 179 2134 99 0 20 chr9 81141184 81141486 -36721141 - AluSq SINE Alu -17 296 1 308 253 13 97 chr9 81141486 81141592 -36721035 - L1MEc LINE L1 -6026 179 88 543 236 0 61 chr9 81141625 81141790 -36720837 - MLT1K LTR MaLR -3 585 431 244 208 0 0 chr9 81141838 81141886 -36720741 + (TG)n Simple_repeat Simple_repeat 2 49 0 369 265 0 34 chr9 81141886 81142003 -36720624 - MLT1K LTR MaLR -463 125 13 1662 109 0 26 chr9 81142114 81142381 -36720246 + AluSq SINE Alu 1 260 -53 399 303 8 17 chr9 81142469 81142588 -36720039 + MIR SINE MIR 143 260 -2 212 258 144 31 chr9 81142563 81142660 -36719967 - L2 LINE L2 -7 3265 3158 * 1832 146 130 3 chr9 81142877 81143199 -36719428 + MER47A DNA MER2_type 1 363 -3 671 253 80 24 chr9 81143370 81143659 -36718968 - L1ME4a LINE L1 -1 6120 5816 269 302 24 49 chr9 81143787 81143992 -36718635 - L1ME4a LINE L1 -357 5764 5565 186 43 0 0 chr9 81144083 81144106 -36718521 + (A)n Simple_repeat Simple_repeat 1 23 0 1824 132 0 35 chr9 81144354 81144523 -36718104 - AluJb SINE Alu -13 299 144 2296 68 0 16 chr9 81144523 81144832 -36717795 - AluY SINE Alu -7 304 1 1824 132 0 35 chr9 81144832 81144972 -36717655 - AluJb SINE Alu -168 144 1 2274 90 6 3 chr9 81145158 81145470 -36717157 - AluSq SINE Alu 0 313 1 1140 261 70 54 chr9 81145630 81145939 -36716688 - L1MC4 LINE L1 -1 8041 7718 2050 98 0 10 chr9 81145939 81146235 -36716392 - AluSx SINE Alu -18 294 2 1140 261 70 54 chr9 81146235 81146481 -36716146 - L1MC4 LINE L1 -324 7718 7477 2023 198 8 40 chr9 81146482 81146881 -36715746 - MLT1F LTR MaLR -29 513 128 570 172 11 0 chr9 81146901 81146994 -36715633 + MLT1F1 LTR MaLR 1 94 -473 205 278 124 71 chr9 81147509 81147688 -36714939 + MIR SINE MIR 12 195 -67 395 189 72 36 chr9 81147688 81147799 -36714828 + HsTC2 DNA Tc2 1 115 -1783 1624 147 18 20 chr9 81147816 81148140 -36714487 - L1PA11 LINE L1 -15 6153 5842 185 179 103 0 chr9 81148365 81148404 -36714223 + L2 LINE L2 3222 3264 -8 233 287 10 79 chr9 81148436 81148537 -36714090 - MIR SINE MIR -65 197 104 1272 201 56 7 chr9 81148675 81148944 -36713683 + AluJo SINE Alu 1 282 -30 190 318 156 23 chr9 81149036 81149209 -36713418 - L2 LINE L2 -118 3195 3000 187 333 0 53 chr9 81149400 81149475 -36713152 - MIR3 SINE MIR -32 176 106 477 311 118 14 chr9 81149976 81150188 -36712439 - MIR SINE MIR -1 261 28 618 261 33 22 chr9 81150243 81150427 -36712200 + MIR SINE MIR 2 187 -75 278 172 138 35 chr9 81150428 81150515 -36712112 - LTR33 LTR ERVL -424 97 2 289 276 0 0 chr9 81150526 81150584 -36712043 + MER5A DNA MER1_type 13 70 -119 194 31 0 62 chr9 81150945 81150977 -36711650 + (GGAA)n Simple_repeat Simple_repeat 3 32 0 1403 272 66 45 chr9 81151155 81151920 -36710707 + L1MC4a LINE L1 5285 6065 -56 447 248 28 0 chr9 81151920 81152029 -36710598 - L2 LINE L2 -10 3303 3192 227 273 0 0 chr9 81152417 81152461 -36710166 + L2 LINE L2 3219 3262 -10 808 215 0 34 chr9 81152466 81152643 -36709984 + FAM SINE Alu 5 175 0 376 282 112 18 chr9 81152730 81153000 -36709627 + LTR16B LTR ERVL 43 286 -178 1891 91 3 25 chr9 81153000 81153286 -36709341 - AluSx SINE Alu -9 303 24 376 282 112 18 chr9 81153286 81153325 -36709302 + LTR16B LTR ERVL 286 320 -144 189 0 0 0 chr9 81153325 81153346 -36709281 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 376 282 112 18 chr9 81153346 81153384 -36709243 + LTR16B LTR ERVL 320 464 0 532 218 152 36 chr9 81153473 81153638 -36708989 - MER5A DNA MER1_type -2 187 4 1713 248 68 20 chr9 81153640 81154136 -36708491 + LTR33 LTR ERVL 2 521 0 291 170 0 0 chr9 81154141 81154194 -36708433 + L1ME LINE L1 5696 5748 -373 234 0 0 0 chr9 81154203 81154229 -36708398 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 1148 178 18 9 chr9 81154230 81154455 -36708172 - AluSx SINE Alu -36 276 50 1372 82 15 20 chr9 81154661 81154856 -36707771 + AluY SINE Alu 109 302 -9 366 248 75 119 chr9 81154908 81155186 -36707441 + L2 LINE L2 2966 3231 -82 237 167 21 21 chr9 81155686 81155734 -36706893 - MLT1K LTR MaLR -437 151 104 262 226 87 17 chr9 81156055 81156170 -36706457 - L2 LINE L2 -273 2999 2877 657 296 102 28 chr9 81157404 81157766 -36704861 - MLT1J LTR MaLR -49 462 74 500 259 116 49 chr9 81157864 81158088 -36704539 + MIR SINE MIR 5 243 -19 553 351 12 29 chr9 81158141 81158386 -36704241 + MIR SINE MIR 22 262 0 1830 141 0 14 chr9 81158938 81159228 -36703399 + AluJo SINE Alu 10 295 -17 857 240 78 0 chr9 81159315 81159532 -36703095 + MIR SINE MIR 29 262 0 458 99 14 0 chr9 81159675 81159746 -36702881 - L1MB8 LINE L1 0 6178 6107 192 314 39 10 chr9 81160287 81160389 -36702238 + MIR SINE MIR 119 223 -39 1501 114 104 59 chr9 81160434 81160723 -36701904 - AluSp SINE Alu -1 302 1 740 183 147 56 chr9 81160857 81161109 -36701518 - ORSL DNA AcHobo 0 275 1 256 274 0 0 chr9 81161876 81161927 -36700700 - MER5B DNA MER1_type -4 174 124 5143 86 12 39 chr9 81161939 81162097 -36700530 - L1MA2 LINE L1 0 6304 6143 2091 106 3 10 chr9 81162097 81162398 -36700229 - AluSx SINE Alu -13 299 1 5143 86 12 39 chr9 81162398 81162417 -36700210 - L1MA2 LINE L1 -161 6143 6125 477 0 0 0 chr9 81162424 81162477 -36700150 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 1982 119 0 10 chr9 81162477 81162762 -36699865 - AluSx SINE Alu -28 284 1 5143 86 12 39 chr9 81162762 81163387 -36699240 - L1MA2 LINE L1 -179 6125 5522 352 202 101 59 chr9 81163388 81163507 -36699120 - MER5B DNA MER1_type -34 144 21 311 320 105 17 chr9 81163546 81163718 -36698909 + MER20B DNA MER1_type 3 189 -594 367 291 106 7 chr9 81164532 81164673 -36697954 - MIR SINE MIR -77 185 31 2522 149 102 35 chr9 81165457 81165528 -36697099 - L1MB4 LINE L1 -1 6179 6114 1701 179 7 3 chr9 81165528 81165836 -36696791 + AluJo SINE Alu 1 309 -3 2522 149 102 35 chr9 81165836 81166301 -36696326 - L1MB4 LINE L1 -66 6114 5607 382 292 246 6 chr9 81166653 81167006 -36695621 - L2 LINE L2 -433 2881 2444 219 232 21 84 chr9 81166979 81167074 -36695553 - MIR3 SINE MIR -8 200 112 * 232 175 0 0 chr9 81167189 81167229 -36695398 + MIR SINE MIR 105 144 -118 1794 132 0 33 chr9 81167438 81167741 -36694886 - AluSx SINE Alu -19 293 1 284 334 141 44 chr9 81168128 81168448 -36694179 + L2 LINE L2 2887 3237 -35 261 313 73 21 chr9 81168864 81168960 -36693667 - MIR3 SINE MIR -21 187 87 2147 99 0 10 chr9 81169064 81169367 -36693260 - AluSx SINE Alu -12 300 1 338 277 36 72 chr9 81169377 81169543 -36693084 - MER5A DNA MER1_type -28 161 2 23 33 0 0 chr9 81169626 81169656 -36692971 + AT_rich Low_complexity Low_complexity 1 30 0 2505 230 43 35 chr9 81170663 81171311 -36691316 + MER82 DNA MER2_type 1 653 0 437 276 43 50 chr9 81172152 81172329 -36690298 - MIR SINE MIR -63 145 11 264 209 179 0 chr9 81173711 81173778 -36688849 - MIR3 SINE MIR -15 193 115 742 263 98 61 chr9 81174098 81174741 -36687886 - L1MC5 LINE L1 -32 7929 7263 633 214 23 98 chr9 81174872 81175059 -36687568 - L1MC5 LINE L1 -733 7228 7065 1973 106 0 35 chr9 81175059 81175370 -36687257 - AluSq SINE Alu -13 300 1 633 214 23 98 chr9 81175370 81175448 -36687179 - L1MC5 LINE L1 -896 7065 6983 1643 160 6 29 chr9 81175573 81175885 -36686742 - AluJo SINE Alu -7 305 1 514 290 107 67 chr9 81175912 81176143 -36686484 - L1MC4a LINE L1 -902 6906 6686 1323 182 84 7 chr9 81176143 81176440 -36686187 - MER33 DNA MER1_type -4 320 1 514 290 107 67 chr9 81176440 81176804 -36685823 - L1MC4a LINE L1 -1122 6686 6287 1725 149 0 54 chr9 81176805 81177120 -36685507 - AluSx SINE Alu -14 298 1 183 238 24 0 chr9 81177275 81177317 -36685310 + MIR SINE MIR 105 147 -61 363 285 128 61 chr9 81177748 81178124 -36684503 - L1ME4a LINE L1 -103 6018 5618 344 226 59 29 chr9 81178537 81178639 -36683988 + MER5A DNA MER1_type 7 111 -78 375 261 23 46 chr9 81178772 81178902 -36683725 + MER5A DNA MER1_type 63 189 0 189 198 116 139 chr9 81179961 81180006 -36682621 + MIR SINE MIR 107 151 -111 1917 116 10 13 chr9 81180006 81180308 -36682319 + AluSx SINE Alu 1 301 -11 189 198 116 139 chr9 81180308 81180348 -36682279 + MIR SINE MIR 151 190 -72 24 32 0 0 chr9 81181128 81181159 -36681468 + AT_rich Low_complexity Low_complexity 1 31 0 2006 112 10 13 chr9 81181247 81181552 -36681075 - AluSx SINE Alu -8 304 1 207 225 90 54 chr9 81181900 81182011 -36680616 - MIR SINE MIR -57 151 37 1926 127 3 0 chr9 81183576 81183867 -36678760 + AluSx SINE Alu 1 292 -20 28 0 0 0 chr9 81284936 81284964 -36577663 + AT_rich Low_complexity Low_complexity 1 28 0 310 268 67 93 chr9 81285023 81285292 -36577335 - HAL1 LINE L1 -11 2496 2235 203 229 21 0 chr9 81285826 81285874 -36576753 + (TA)n Simple_repeat Simple_repeat 2 50 0 189 94 0 0 chr9 81286253 81286285 -36576342 + (TTTTTG)n Simple_repeat Simple_repeat 3 34 0 823 197 67 10 chr9 81286845 81287038 -36575589 - L1MB4 LINE L1 -15 6165 5962 433 191 11 34 chr9 81287049 81287138 -36575489 + MER20 DNA MER1_type 20 106 -113 238 221 44 0 chr9 81289160 81289228 -36573399 + MLT1F LTR MaLR 472 542 0 2807 99 0 0 chr9 81289435 81289810 -36572817 + THE1C LTR MaLR 1 375 0 1567 189 33 49 chr9 81290052 81290443 -36572184 - L1MA9 LINE L1 -151 6161 5777 762 105 0 0 chr9 81290463 81290568 -36572059 + U6 snRNA snRNA 1 105 -2 24 32 0 0 chr9 81290569 81290600 -36572027 + AT_rich Low_complexity Low_complexity 1 31 0 1211 159 9 23 chr9 81290600 81290820 -36571807 - L1MA9 LINE L1 -542 5792 5576 28 0 0 0 chr9 81290821 81290849 -36571778 + AT_rich Low_complexity Low_complexity 1 28 0 444 218 42 49 chr9 81290885 81291027 -36571600 - MER50 LTR ERV1 -581 153 13 4587 98 44 7 chr9 81291032 81291714 -36570913 - L1PB1 LINE L1 -42 6109 5403 3287 181 28 31 chr9 81291714 81291943 -36570684 - L1MA9 LINE L1 -731 5581 5353 1855 163 13 10 chr9 81291943 81292244 -36570383 - AluSx SINE Alu -10 302 1 3287 181 28 31 chr9 81292244 81292973 -36569654 - L1MA9 LINE L1 -959 5353 4620 8351 115 27 28 chr9 81292973 81294283 -36568344 + MER57A-int LTR ERV1 5839 7146 -391 783 100 23 31 chr9 81294283 81294413 -36568214 + LTR54B LTR ERV1 3 131 -367 1604 134 0 41 chr9 81294414 81294683 -36567944 + MER57A-int LTR ERV1 7280 7537 0 1974 161 49 3 chr9 81294683 81295068 -36567559 + MER57A LTR ERV1 1 403 0 23 0 0 0 chr9 81295088 81295111 -36567516 + AT_rich Low_complexity Low_complexity 1 23 0 1093 101 169 0 chr9 81295823 81296012 -36566615 - L1PA13 LINE L1 0 6163 5943 502 303 146 0 chr9 81297305 81297483 -36565144 - MIR SINE MIR -30 232 29 1981 147 3 0 chr9 81297522 81297822 -36564805 + AluSx SINE Alu 1 301 -11 218 269 0 15 chr9 81297825 81297892 -36564735 + GA-rich Low_complexity Low_complexity 2 67 0 25 65 0 0 chr9 81299780 81299826 -36562801 + AT_rich Low_complexity Low_complexity 1 46 0 595 71 20 0 chr9 81300111 81300209 -36562418 + (TAGA)n Simple_repeat Simple_repeat 2 101 0 11828 164 40 56 chr9 81300365 81304392 -36558235 - L1MA3 LINE L1 0 7724 3764 6859 131 23 3 chr9 81304376 81305501 -36557126 - L1MA3 LINE L1 -4470 3095 1948 * 3324 198 9 1 chr9 81305501 81306158 -36556469 - L1PA16 LINE L1 -11 6155 5494 1695 182 0 0 chr9 81306158 81306449 -36556178 - L1P4 LINE L1 -393 5773 5483 319 367 15 40 chr9 81307069 81307268 -36555359 + L2 LINE L2 2550 2743 -571 49 66 0 0 chr9 81310721 81310812 -36551815 + AT_rich Low_complexity Low_complexity 1 91 0 314 305 17 17 chr9 81310864 81310982 -36551645 + L1ME LINE L1 5546 5663 -458 317 291 51 23 chr9 81311216 81311391 -36551236 + L1MEc LINE L1 1939 2118 -4278 21 57 0 0 chr9 81311753 81311788 -36550839 + AT_rich Low_complexity Low_complexity 1 35 0 2537 40 0 0 chr9 81312095 81312393 -36550234 - AluY SINE Alu -13 298 1 28 29 0 0 chr9 81313219 81313254 -36549373 + AT_rich Low_complexity Low_complexity 1 35 0 1787 221 112 10 chr9 81314537 81315029 -36547598 + MER34 LTR ERV1 1 542 0 202 182 0 0 chr9 81316407 81316440 -36546187 + (CA)n Simple_repeat Simple_repeat 2 34 0 22 0 0 0 chr9 81316855 81316877 -36545750 + AT_rich Low_complexity Low_complexity 1 22 0 30 45 0 0 chr9 81317210 81317254 -36545373 + AT_rich Low_complexity Low_complexity 1 44 0 2065 89 0 7 chr9 81318743 81319034 -36543593 + L1PB1 LINE L1 5863 6151 0 365 316 95 22 chr9 81319222 81319453 -36543174 + L2 LINE L2 1698 1945 -1369 26 0 0 0 chr9 81319590 81319616 -36543011 + AT_rich Low_complexity Low_complexity 1 26 0 969 291 157 16 chr9 81319871 81320046 -36542581 - L1ME1 LINE L1 -4 6096 5947 1832 133 56 3 chr9 81320046 81320332 -36542295 - AluSx SINE Alu -11 301 1 969 291 157 16 chr9 81320332 81320831 -36541796 - L1ME1 LINE L1 -153 5947 5322 807 265 77 14 chr9 81320954 81321241 -36541386 - L1MCa LINE L1 -6103 323 19 1082 246 53 75 chr9 81321257 81321807 -36540820 - L1ME1 LINE L1 -1778 4302 3765 777 274 66 26 chr9 81321788 81322138 -36540489 - L1ME1 LINE L1 -3256 2824 2461 * 909 274 118 23 chr9 81322149 81322731 -36539896 - L1ME1 LINE L1 -3654 2426 1823 1864 142 3 3 chr9 81322807 81323095 -36539532 - AluSx SINE Alu -15 297 10 326 259 31 84 chr9 81323168 81323211 -36539416 - L1ME1 LINE L1 -4558 1522 1478 1141 212 8 8 chr9 81323211 81323447 -36539180 - MER46A DNA MER2_type 0 236 1 326 259 31 84 chr9 81323447 81323597 -36539030 - L1ME1 LINE L1 -4602 1478 1193 247 283 80 22 chr9 81323789 81323927 -36538700 - L1ME1 LINE L1 -5066 1004 859 362 320 103 11 chr9 81323933 81324205 -36538422 - L1ME1 LINE L1 -5241 829 533 252 250 21 10 chr9 81324647 81324743 -36537884 + L1M4 LINE L1 1404 1500 -5246 2368 98 0 0 chr9 81324779 81325086 -36537541 - AluSg SINE Alu -3 307 1 21 57 0 0 chr9 81325314 81325349 -36537278 + AT_rich Low_complexity Low_complexity 1 35 0 22 80 0 0 chr9 81327144 81327194 -36535433 + AT_rich Low_complexity Low_complexity 1 50 0 2376 206 28 41 chr9 81328498 81329037 -36533590 + MLT2B3 LTR ERVL 3 534 -20 339 113 0 0 chr9 81329039 81329092 -36533535 + (CCTA)n Simple_repeat Simple_repeat 3 55 0 303 104 21 0 chr9 81329130 81329178 -36533449 + MLT2B3 LTR ERVL 506 554 0 580 78 0 0 chr9 81329416 81329493 -36533134 - MADE1 DNA Mariner 0 80 4 29 0 0 0 chr9 81329657 81329686 -36532941 + AT_rich Low_complexity Low_complexity 1 29 0 724 290 112 21 chr9 81329817 81330103 -36532524 - MLT1H LTR MaLR -122 427 116 1151 274 52 3 chr9 81330105 81330467 -36532160 + L1M4 LINE L1 2309 2688 -4161 332 338 106 30 chr9 81331262 81331564 -36531063 + L3b LINE CR1 1129 1453 -130 725 146 0 0 chr9 81332050 81332160 -36530467 + AluSp/q SINE Alu 182 291 -22 21 0 0 0 chr9 81333134 81333155 -36529472 + AT_rich Low_complexity Low_complexity 1 21 0 1078 106 6 0 chr9 81333157 81333317 -36529310 - L1MA1 LINE L1 0 6302 6142 737 112 0 0 chr9 81333317 81333424 -36529203 - L1MA2 LINE L1 -286 6018 5912 1175 169 51 4 chr9 81333424 81333661 -36528966 - L1MA6 LINE L1 -13 6287 6040 1049 264 23 93 chr9 81333667 81334312 -36528315 + L1MC4 LINE L1 7170 7769 -273 207 280 0 0 chr9 81334417 81334467 -36528160 + (CATA)n Simple_repeat Simple_repeat 1 50 0 270 0 0 0 chr9 81334478 81334508 -36528119 + (TG)n Simple_repeat Simple_repeat 1 30 0 228 305 45 23 chr9 81334630 81334807 -36527820 + L1ME4a LINE L1 5927 6107 -14 216 0 0 0 chr9 81335748 81335772 -36526855 + (TATG)n Simple_repeat Simple_repeat 2 25 0 1554 181 11 14 chr9 81335774 81336056 -36526571 - AluJb SINE Alu -31 281 1 809 214 35 8 chr9 81336705 81336943 -36525684 + L1MD3 LINE L1 7673 7995 0 4546 185 50 7 chr9 81336963 81337645 -36524982 - L1PA16 LINE L1 -9 7595 6944 1952 159 27 19 chr9 81337645 81338017 -36524610 - THE1C LTR MaLR 0 375 1 4546 185 50 7 chr9 81338017 81338879 -36523748 - L1PA16 LINE L1 -660 6944 5987 9457 259 23 11 chr9 81339780 81343466 -36519161 - L1PA16 LINE L1 -1581 6003 2259 821 391 3 11 chr9 81344092 81344463 -36518164 - L1PA16 LINE L1 -6418 1156 789 264 327 148 0 chr9 81345053 81345215 -36517412 - MIR SINE MIR -75 187 2 1830 144 102 9 chr9 81346580 81346913 -36515714 + THE1B LTR MaLR 1 364 0 8970 134 46 11 chr9 81346913 81347362 -36515265 + THE1B-int LTR MaLR 1 433 -1147 2816 10 0 0 chr9 81347362 81347673 -36514954 + AluYa5 SINE Alu 1 311 0 8970 134 46 11 chr9 81347673 81348619 -36514008 + THE1B-int LTR MaLR 433 1445 -135 830 86 86 0 chr9 81348739 81348878 -36513749 + THE1B-int LTR MaLR 1430 1580 0 2089 164 17 6 chr9 81348878 81349238 -36513389 + THE1B LTR MaLR 1 364 0 2128 123 10 3 chr9 81349690 81349998 -36512629 - AluSg SINE Alu 0 310 1 420 82 0 0 chr9 81350099 81350160 -36512467 + (CA)n Simple_repeat Simple_repeat 2 62 0 356 309 83 29 chr9 81350207 81350557 -36512070 + L1ME LINE L1 5326 5694 -427 2454 252 115 25 chr9 81350702 81351465 -36511162 + L1MC3 LINE L1 5 698 -5866 20931 34 8 1 chr9 81351465 81354778 -36507849 + L1PA3 LINE L1 2834 6153 -2 2454 252 115 25 chr9 81354778 81355422 -36507205 + L1MC3 LINE L1 698 1282 -5282 1892 153 7 13 chr9 81355422 81355723 -36506904 + AluSx SINE Alu 1 299 -13 2454 252 115 25 chr9 81355723 81356782 -36505845 + L1MC3 LINE L1 1282 2244 -4320 315 0 0 0 chr9 81356782 81356817 -36505810 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2454 252 115 25 chr9 81356817 81357496 -36505131 + L1MC3 LINE L1 2244 3508 -3056 579 260 39 0 chr9 81357561 81357715 -36504912 + L1MC3 LINE L1 3940 4099 -2465 1216 241 100 59 chr9 81358309 81358769 -36503858 + MLT1D LTR MaLR 27 505 0 1529 277 37 19 chr9 81358774 81358863 -36503764 + L1MC3 LINE L1 4114 4200 -2364 2043 149 24 24 chr9 81358863 81359238 -36503389 + THE1C LTR MaLR 1 375 0 9068 137 34 37 chr9 81359239 81360823 -36501804 + THE1C-int LTR MaLR 2 1580 0 2098 137 44 14 chr9 81360823 81361187 -36501440 + THE1C LTR MaLR 1 375 0 1529 277 37 19 chr9 81361187 81361690 -36500937 + L1MC3 LINE L1 4199 4719 -1845 619 199 6 40 chr9 81361714 81361890 -36500737 - L1 LINE L1 -812 5334 5165 346 136 15 0 chr9 81361887 81361953 -36500674 + L1P LINE L1 5099 5165 -981 * 1323 222 4 0 chr9 81361951 81362221 -36500406 - L1P LINE L1 -2077 4069 3799 * 4784 139 21 3 chr9 81362215 81362985 -36499642 + L1PA15 LINE L1 5371 6154 -11 1409 174 0 55 chr9 81362985 81363306 -36499321 + AluJb SINE Alu 23 328 0 1679 274 38 48 chr9 81363320 81364130 -36498497 + L1MC3 LINE L1 4826 5627 -937 1518 251 44 14 chr9 81364157 81364174 -36498453 + L1MC3 LINE L1 5689 5704 -2499 2281 78 24 0 chr9 81364174 81364467 -36498160 + AluY SINE Alu 1 300 -11 1518 251 44 14 chr9 81364467 81364883 -36497744 + L1MC3 LINE L1 5704 6135 -2068 1341 216 64 25 chr9 81364889 81365344 -36497283 + L1MC3 LINE L1 6330 6707 -1496 4503 160 24 6 chr9 81365345 81366128 -36496499 - Tigger1 DNA MER2_type -1 2417 1621 2239 150 13 8 chr9 81366165 81366538 -36496089 - L1PA16 LINE L1 -106 6060 5686 * 2981 238 47 1 chr9 81366521 81367295 -36495332 + L1 LINE L1 3713 4521 -1625 1821 140 65 0 chr9 81367295 81367603 -36495024 - Tigger1 DNA MER2_type -775 1643 1316 * 2259 164 40 2 chr9 81367602 81367999 -36494628 - Tigger1 DNA MER2_type -1997 421 10 2946 209 89 15 chr9 81367999 81368730 -36493897 + L1MC3 LINE L1 6984 7768 -17 46 0 0 0 chr9 81368734 81368780 -36493847 + AT_rich Low_complexity Low_complexity 1 46 0 256 163 0 0 chr9 81368911 81368954 -36493673 + L1ME4a LINE L1 5990 6032 -89 207 219 0 0 chr9 81369376 81369417 -36493210 + (CATA)n Simple_repeat Simple_repeat 3 43 0 23 33 0 0 chr9 81369812 81369842 -36492785 + AT_rich Low_complexity Low_complexity 1 30 0 505 291 132 0 chr9 81370102 81370284 -36492343 - MIR SINE MIR -12 250 45 1992 193 89 27 chr9 81370286 81370769 -36491858 - L1MA10 LINE L1 -2 6332 5820 2671 186 47 27 chr9 81370770 81371372 -36491255 - L1MC1 LINE L1 -15 6318 5705 * 41187 61 5 4 chr9 81371371 81377523 -36485104 + L1PA5 LINE L1 3 6154 0 1840 211 42 14 chr9 81377527 81378186 -36484441 - L1MC1 LINE L1 -619 5714 5040 1436 210 118 3 chr9 81378187 81378534 -36484093 - MLT2C2 LTR ERVL -73 391 5 1162 196 122 37 chr9 81379635 81379962 -36482665 + L1MB2 LINE L1 5817 6171 0 2403 69 7 0 chr9 81380596 81380902 -36481725 + AluY SINE Alu 1 308 -3 2442 59 0 7 chr9 81381064 81381371 -36481256 - AluY SINE Alu -6 305 1 343 307 136 23 chr9 81381787 81381963 -36480664 - L2 LINE L2 0 3313 3118 2531 62 0 0 chr9 81382180 81382486 -36480141 - AluY SINE Alu -5 306 1 315 299 0 0 chr9 81382776 81382873 -36479754 + MER110A LTR ERV1 74 170 -298 6761 63 7 1 chr9 81383667 81384738 -36477889 + L1PA7 LINE L1 5077 6152 -2 312 27 0 0 chr9 81385736 81385773 -36476854 + (CA)n Simple_repeat Simple_repeat 1 37 0 199 294 0 0 chr9 81386822 81386873 -36475754 + L2 LINE L2 3216 3266 -6 226 263 93 59 chr9 81388723 81388841 -36473786 - L2 LINE L2 0 3313 3192 32 0 0 0 chr9 81389215 81389247 -36473380 + AT_rich Low_complexity Low_complexity 1 32 0 4216 186 60 32 chr9 81389782 81390823 -36471804 + MER11C LTR ERVK 1 1071 0 446 329 107 17 chr9 81391586 81391820 -36470807 - MIR SINE MIR 0 262 8 29 0 0 0 chr9 81391821 81391850 -36470777 + AT_rich Low_complexity Low_complexity 1 29 0 1970 116 18 0 chr9 81392795 81393080 -36469547 - AluSx SINE Alu -22 290 1 1964 108 3 48 chr9 81393211 81393525 -36469102 + AluSx SINE Alu 5 304 -8 211 317 17 0 chr9 81393842 81393902 -36468725 - MIR SINE MIR -129 79 19 21 0 0 0 chr9 81394374 81394395 -36468232 + AT_rich Low_complexity Low_complexity 1 21 0 219 108 40 40 chr9 81395502 81395576 -36467051 + (TA)n Simple_repeat Simple_repeat 2 75 0 40 21 0 0 chr9 81396268 81396315 -36466312 + AT_rich Low_complexity Low_complexity 1 47 0 947 275 68 29 chr9 81396687 81397141 -36465486 + L1MCc LINE L1 16 487 -5936 479 192 44 118 chr9 81397226 81397429 -36465198 + L1ME1 LINE L1 5971 6158 -8 219 242 0 0 chr9 81397473 81397535 -36465092 + GA-rich Low_complexity Low_complexity 3 64 0 263 328 39 8 chr9 81397579 81397707 -36464920 + MIR SINE MIR 89 220 -42 279 103 69 17 chr9 81397873 81397989 -36464638 + (TTATA)n Simple_repeat Simple_repeat 3 124 0 * 490 75 93 12 chr9 81397968 81398129 -36464498 + (TATAG)n Simple_repeat Simple_repeat 2 175 0 297 185 56 9 chr9 81398129 81398237 -36464390 + (TTATA)n Simple_repeat Simple_repeat 5 117 0 330 131 71 0 chr9 81398237 81398405 -36464222 + (TA)n Simple_repeat Simple_repeat 1 180 0 * 458 83 50 16 chr9 81398364 81398485 -36464142 + (TTATA)n Simple_repeat Simple_repeat 5 129 0 213 39 0 0 chr9 81398485 81398511 -36464116 + (CA)n Simple_repeat Simple_repeat 2 27 0 217 325 103 0 chr9 81398855 81398981 -36463646 + L2 LINE L2 3131 3269 -44 603 272 151 13 chr9 81399110 81399654 -36462973 - LTR50 LTR ERVL -4 791 73 1662 81 5 0 chr9 81399672 81399895 -36462732 - L1PA8 LINE L1 -3 6169 5946 2208 54 7 0 chr9 81399895 81400172 -36462455 + L1P3 LINE L1 5540 5818 -354 317 277 24 0 chr9 81400172 81400255 -36462372 - LTR50 LTR ERVL -708 87 3 24 32 0 0 chr9 81401181 81401212 -36461415 + AT_rich Low_complexity Low_complexity 1 31 0 197 81 0 27 chr9 81401343 81401380 -36461247 + (TTTTTA)n Simple_repeat Simple_repeat 1 36 0 22 70 0 0 chr9 81401514 81401557 -36461070 + AT_rich Low_complexity Low_complexity 1 43 0 198 143 0 0 chr9 81401955 81401990 -36460637 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 327 25 0 0 chr9 81402010 81402050 -36460577 + (CA)n Simple_repeat Simple_repeat 1 40 0 2960 132 8 6 chr9 81402096 81402567 -36460060 + MER9 LTR ERVK 40 511 0 215 234 170 21 chr9 81402872 81402966 -36459661 - MER5B DNA MER1_type -34 144 37 1582 238 36 126 chr9 81402966 81403499 -36459128 + L1MDa LINE L1 18 475 -6065 3939 166 29 32 chr9 81403499 81404330 -36458297 + L1MA7 LINE L1 5464 6291 0 1582 238 36 126 chr9 81404330 81404494 -36458133 + L1MDa LINE L1 475 652 -5888 2219 258 68 11 chr9 81404514 81405356 -36457271 + L1MDa LINE L1 2722 3611 -2929 5456 195 44 11 chr9 81405391 81406563 -36456064 - L1M1 LINE L1 -6337 1228 18 210 338 122 0 chr9 81406606 81406680 -36455947 - MIR SINE MIR -179 83 1 189 0 0 0 chr9 81406894 81406915 -36455712 + (A)n Simple_repeat Simple_repeat 1 21 0 358 283 9 0 chr9 81406926 81407039 -36455588 - LTR16B LTR ERVL -89 375 262 326 273 116 79 chr9 81407679 81407946 -36454681 - L1ME4a LINE L1 -249 5872 5596 272 178 40 99 chr9 81408549 81408650 -36453977 - L1MA9 LINE L1 -38 6274 6180 21 71 0 0 chr9 81408882 81408924 -36453703 + AT_rich Low_complexity Low_complexity 1 42 0 2952 158 19 9 chr9 81409141 81409704 -36452923 + L1MA8 LINE L1 5718 6286 -5 21 0 0 0 chr9 81409907 81409928 -36452699 + AT_rich Low_complexity Low_complexity 1 21 0 201 138 0 0 chr9 81410069 81410098 -36452529 + (TC)n Simple_repeat Simple_repeat 1 29 0 268 326 11 21 chr9 81410440 81410535 -36452092 - LTR16C LTR ERVL -95 396 303 190 331 121 16 chr9 81410956 81411080 -36451547 + MIR SINE MIR 20 156 -106 2294 128 22 6 chr9 81411098 81411456 -36451171 - THE1B LTR MaLR 0 364 1 32 43 0 0 chr9 81412601 81412647 -36449980 + AT_rich Low_complexity Low_complexity 1 46 0 7491 96 9 3 chr9 81413282 81415158 -36447469 - L1PA7 LINE L1 0 6154 4271 2014 251 10 18 chr9 81416043 81416542 -36446085 - LTR42 LTR ERVL 0 495 1 3822 24 0 4 chr9 81417135 81417588 -36445039 - L1PA4 LINE L1 -3 6152 5702 491 99 0 0 chr9 81417588 81417659 -36444968 + L1P LINE L1 1601 1671 -4475 1182 214 74 8 chr9 81417878 81418135 -36444492 - MLT1A1 LTR MaLR -8 357 84 4567 28 0 0 chr9 81419422 81420033 -36442594 + L1PA3 LINE L1 5615 6225 0 373 167 0 0 chr9 81420195 81420273 -36442354 - L1MA7 LINE L1 -8 6283 6206 30 27 0 0 chr9 81420475 81420512 -36442115 + AT_rich Low_complexity Low_complexity 1 37 0 882 255 40 22 chr9 81421644 81421962 -36440665 + MER58B DNA MER1_type 1 341 0 304 127 0 0 chr9 81422471 81422526 -36440101 + L1MA7 LINE L1 6237 6291 0 900 238 11 23 chr9 81422781 81423046 -36439581 + L1MA9 LINE L1 6013 6274 -38 1899 145 7 0 chr9 81423074 81423394 -36439233 + AluSx SINE Alu 1 322 0 22 70 0 0 chr9 81423454 81423497 -36439130 + AT_rich Low_complexity Low_complexity 1 43 0 1800 182 10 31 chr9 81423566 81423956 -36438671 + MLT1B LTR MaLR 5 386 -4 32 43 0 0 chr9 81424369 81424415 -36438212 + AT_rich Low_complexity Low_complexity 1 46 0 1356 269 104 20 chr9 81424541 81424991 -36437636 - LTR40a LTR ERVL 0 519 32 974 241 4 55 chr9 81424991 81425248 -36437379 - HERVL68 LTR ERVL -3 5527 5284 263 278 0 0 chr9 81425455 81425509 -36437118 - HERVL68 LTR ERVL -260 2777 2724 4644 203 22 2 chr9 81425573 81425633 -36436994 - L1 LINE L1 -1679 4467 4410 324 0 0 0 chr9 81425633 81425669 -36436958 + (TTA)n Simple_repeat Simple_repeat 2 37 0 4644 203 22 2 chr9 81425669 81426604 -36436023 - L1 LINE L1 -1736 4410 3452 3232 132 16 8 chr9 81426571 81426733 -36435894 + L1PB1 LINE L1 5627 5786 -365 * 234 0 0 0 chr9 81426733 81426759 -36435868 + (TA)n Simple_repeat Simple_repeat 1 26 0 3232 132 16 8 chr9 81426759 81427113 -36435514 + L1PB1 LINE L1 5786 6147 -4 397 286 79 31 chr9 81427348 81427575 -36435052 - HERVL68 LTR ERVL -326 2711 2474 2201 310 58 12 chr9 81427853 81428307 -36434320 - HERVL40 LTR ERVL -870 4660 4149 2240 66 0 7 chr9 81428307 81428594 -36434033 + L1PA5 LINE L1 5867 6151 -3 2201 310 58 12 chr9 81428594 81428965 -36433662 - HERVL40 LTR ERVL -1381 4149 3797 1325 219 77 35 chr9 81429058 81429526 -36433101 - MER67C LTR ERV1 -4 510 62 4278 281 48 50 chr9 81429645 81431279 -36431348 - HERVL40 LTR ERVL -1849 3681 2050 1072 296 72 17 chr9 81431278 81431640 -36430987 - HERVL40 LTR ERVL -3913 1617 1236 * 3472 121 0 2 chr9 81431691 81432195 -36430432 + MER75 DNA T2_type 1 503 -11 520 272 22 0 chr9 81432329 81432465 -36430162 - HERVL40 LTR ERVL -4457 1073 935 668 188 0 0 chr9 81432782 81432894 -36429733 - LTR40a LTR ERVL 0 519 408 633 295 12 6 chr9 81432896 81433067 -36429560 - LTR40b LTR ERVL -189 273 102 6965 187 8 19 chr9 81433067 81434390 -36428237 - Tigger2 DNA MER2_type 0 2718 1410 213 139 0 0 chr9 81434390 81434433 -36428194 + (T)n Simple_repeat Simple_repeat 1 43 0 1096 0 0 30 chr9 81434433 81434566 -36428061 - L1HS LINE L1 0 6155 6027 6218 156 36 104 chr9 81434566 81435063 -36427564 - Tigger2 DNA MER2_type -1302 1416 886 456 176 0 33 chr9 81435063 81435154 -36427473 - FRAM SINE Alu -14 162 75 6218 156 36 104 chr9 81435154 81435201 -36427426 - Tigger2 DNA MER2_type -1832 886 837 666 236 0 0 chr9 81435201 81435324 -36427303 - FLAM_C SINE Alu -10 123 1 6218 156 36 104 chr9 81435324 81436172 -36426455 - Tigger2 DNA MER2_type -1881 837 35 460 236 9 9 chr9 81436176 81436282 -36426345 - LTR40a LTR ERVL -413 106 1 13290 121 47 13 chr9 81437869 81439114 -36423513 + Charlie3 DNA MER1_type 1 1345 -1361 2007 128 7 0 chr9 81439114 81439425 -36423202 + AluSx SINE Alu 1 313 0 13290 121 47 13 chr9 81439425 81440231 -36422396 + Charlie3 DNA MER1_type 1345 2122 -584 2938 56 6 145 chr9 81440231 81440476 -36422151 + MLT2A1 LTR ERVL 1 138 -306 7402 38 0 0 chr9 81440476 81441879 -36420748 + L1PA4 LINE L1 4751 6153 -2 2938 56 6 145 chr9 81441879 81442149 -36420478 + MLT2A1 LTR ERVL 138 444 0 * 3799 130 17 9 chr9 81442149 81442732 -36419895 + Charlie3 DNA MER1_type 2118 2705 -5 1099 174 124 0 chr9 81442733 81442951 -36419676 - LTR47A LTR ERVL -205 247 3 6239 171 46 58 chr9 81442966 81443622 -36419005 - MER4B-int LTR ERV1 -258 5691 5028 195 42 0 0 chr9 81443622 81443646 -36418981 + (TTG)n Simple_repeat Simple_repeat 1 24 0 1812 143 30 0 chr9 81443646 81443912 -36418715 - AluSg SINE Alu -36 274 1 6239 171 46 58 chr9 81443912 81445574 -36417053 - MER4B-int LTR ERV1 -919 5030 4165 575 164 18 26 chr9 81445570 81445722 -36416905 - MER4B-int LTR ERV1 -2774 3557 2816 * 1360 243 76 113 chr9 81445882 81446918 -36415709 - MER4B-int LTR ERV1 -2999 2947 1950 994 171 18 0 chr9 81447255 81447419 -36415208 - LTR47A LTR ERVL -9 443 277 2796 122 63 5 chr9 81447485 81447746 -36414881 - MLT2A2 LTR ERVL 0 453 209 333 0 0 0 chr9 81447746 81447783 -36414844 + (TTA)n Simple_repeat Simple_repeat 3 39 0 3432 41 0 2 chr9 81447783 81448201 -36414426 - L1PA3 LINE L1 -18 6137 5721 2796 122 63 5 chr9 81448201 81448366 -36414261 - MLT2A2 LTR ERVL -243 210 1 215 360 79 0 chr9 81448725 81448839 -36413788 - L2 LINE L2 0 3272 3150 219 349 12 0 chr9 81449097 81449180 -36413447 - MIR SINE MIR -8 254 171 790 268 69 8 chr9 81449196 81449313 -36413314 - MIR SINE MIR 0 262 154 1421 202 29 71 chr9 81449313 81449381 -36413246 - MLT1A1 LTR MaLR 0 365 296 2136 124 0 3 chr9 81449381 81449687 -36412940 + AluY SINE Alu 1 305 -6 1421 202 29 71 chr9 81449687 81449999 -36412628 - MLT1A1 LTR MaLR -69 296 1 790 268 69 8 chr9 81449999 81450127 -36412500 - MIR SINE MIR -108 154 2 319 282 161 16 chr9 81450133 81450257 -36412370 - MIR SINE MIR -98 164 23 2217 140 31 17 chr9 81450436 81450793 -36411834 + THE1B LTR MaLR 1 362 -2 11053 100 21 1 chr9 81450795 81452344 -36410283 + THE1B-int LTR MaLR 1 1580 0 2207 147 28 19 chr9 81452344 81452705 -36409922 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr9 81452756 81452777 -36409850 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 81452803 81452825 -36409802 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chr9 81452902 81452947 -36409680 + AT_rich Low_complexity Low_complexity 1 45 0 280 282 60 43 chr9 81453531 81453648 -36408979 + MIR SINE MIR 23 141 -121 398 224 66 77 chr9 81454077 81454183 -36408444 - MLT1L LTR MaLR -340 275 170 2817 13 0 0 chr9 81454183 81454493 -36408134 + AluY SINE Alu 1 310 -1 398 224 66 77 chr9 81454493 81454582 -36408045 - MLT1L LTR MaLR -445 170 82 521 231 19 0 chr9 81454607 81454715 -36407912 + FLAM_C SINE Alu 24 133 -10 1987 259 84 44 chr9 81454923 81455642 -36406985 + L1MD1 LINE L1 38 870 -5670 2467 247 35 34 chr9 81455699 81456736 -36405891 + L1MD1 LINE L1 5337 6385 -251 202 132 26 0 chr9 81457257 81457295 -36405332 + (TCCA)n Simple_repeat Simple_repeat 4 42 0 306 50 0 0 chr9 81457399 81457439 -36405188 + (TG)n Simple_repeat Simple_repeat 2 41 0 22 56 0 0 chr9 81458374 81458410 -36404217 + AT_rich Low_complexity Low_complexity 1 36 0 223 238 0 16 chr9 81458782 81458845 -36403782 + CT-rich Low_complexity Low_complexity 1 62 0 1156 257 97 11 chr9 81458848 81459210 -36403417 + MLT1F1 LTR MaLR 175 567 0 22 35 0 0 chr9 81459504 81459533 -36403094 + AT_rich Low_complexity Low_complexity 1 29 0 403 253 86 56 chr9 81459718 81459880 -36402747 - MIR SINE MIR -33 229 63 28 29 0 0 chr9 81459955 81459990 -36402637 + AT_rich Low_complexity Low_complexity 1 35 0 330 316 143 56 chr9 81461081 81461675 -36400952 + L1MC4a LINE L1 5277 5922 -1886 24 0 0 0 chr9 81461695 81461719 -36400908 + AT_rich Low_complexity Low_complexity 1 24 0 2193 124 0 0 chr9 81462396 81462694 -36399933 - AluSx SINE Alu -13 299 2 603 219 44 22 chr9 81463755 81463938 -36398689 - MER53 DNA DNA -2 187 1 322 268 0 0 chr9 81464066 81464137 -36398490 - MLT1I LTR MaLR -258 151 81 959 188 5 48 chr9 81464146 81464390 -36398237 + AluJb SINE Alu 85 319 0 2333 106 0 3 chr9 81464581 81464892 -36397735 + AluSx SINE Alu 1 310 -2 200 148 74 19 chr9 81466057 81466111 -36396516 - L2 LINE L2 -10 3262 3206 359 325 24 30 chr9 81469043 81469212 -36393415 - FRAM SINE Alu -5 161 1 212 269 0 0 chr9 81470189 81470241 -36392386 - MIR SINE MIR -103 159 108 1733 179 3 3 chr9 81470286 81470583 -36392044 - AluJb SINE Alu -15 297 1 1574 229 50 13 chr9 81471048 81471445 -36391182 + MLT1F1 LTR MaLR 97 508 -59 332 109 16 16 chr9 81474839 81474883 -36387744 + AluS SINE Alu 1 44 -259 343 45 0 0 chr9 81474883 81474927 -36387700 + AluY SINE Alu 1 44 -255 2298 116 0 0 chr9 81474927 81475228 -36387399 + AluSx SINE Alu 1 301 -11 315 165 0 29 chr9 81475362 81475465 -36387162 + (AGGTG)n Simple_repeat Simple_repeat 3 102 0 2201 103 0 7 chr9 81475841 81476132 -36386495 - AluSq SINE Alu -24 289 1 700 270 144 18 chr9 81476217 81476558 -36386069 - L2 LINE L2 -2 3311 2928 2551 40 3 3 chr9 81478327 81478623 -36384004 - AluY SINE Alu -15 296 1 232 270 16 0 chr9 81478737 81478800 -36383827 - L1 LINE L1 -1183 4963 4900 1948 134 34 3 chr9 81478803 81479095 -36383532 - AluSx SINE Alu -11 301 1 2498 51 10 0 chr9 81479673 81479966 -36382661 - AluSp SINE Alu -17 296 1 668 117 0 0 chr9 81480893 81480987 -36381640 - AluJo/FRAM SINE Alu -16 296 203 305 119 0 0 chr9 81480988 81481030 -36381597 + Alu SINE Alu 1 42 -260 2932 116 94 4 chr9 81482167 81482633 -36379994 - MER9 LTR ERVK -3 508 1 968 130 43 22 chr9 81483501 81483685 -36378942 + MER4C LTR ERV1 1 188 -277 7140 45 8 3 chr9 81483685 81484559 -36378068 - L1PA5 LINE L1 -2 6152 5275 284 308 60 8 chr9 81484673 81484806 -36377821 - MLT1G3 LTR MaLR -387 143 4 2174 84 7 27 chr9 81485035 81485332 -36377295 - AluSx SINE Alu -20 292 2 2422 73 0 22 chr9 81485333 81485648 -36376979 - AluY SINE Alu -3 308 1 2230 105 16 10 chr9 81485770 81486076 -36376551 - AluY SINE Alu -3 308 1 347 111 0 19 chr9 81486082 81486136 -36376491 - Alu SINE Alu -8 293 241 2986 173 15 0 chr9 81486236 81486769 -36375858 + L1P LINE L1 4554 5094 -1052 1876 71 0 5 chr9 81486779 81487003 -36375624 + AluSg SINE Alu 64 286 -24 35 24 0 0 chr9 81487003 81487045 -36375582 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chr9 81487349 81487377 -36375250 + AT_rich Low_complexity Low_complexity 1 28 0 1058 176 23 0 chr9 81487485 81487701 -36374926 + L1MA8 LINE L1 6069 6289 -2 1643 186 7 10 chr9 81487900 81488196 -36374431 + AluJo SINE Alu 1 295 -17 468 202 105 8 chr9 81488196 81488320 -36374307 - L1 LINE L1 -801 5345 5210 516 211 41 0 chr9 81488320 81488443 -36374184 + L1M2 LINE L1 5391 5518 -794 2897 190 2 0 chr9 81488457 81488999 -36373628 - L1P LINE L1 -885 5261 4719 7070 159 14 2 chr9 81489009 81490230 -36372397 + L1PA12 LINE L1 3956 5191 -955 1011 189 10 0 chr9 81490235 81490431 -36372196 + L1PB1 LINE L1 3 200 -6663 10525 121 109 17 chr9 81490431 81492258 -36370369 + L1PB1 LINE L1 634 2629 -4234 * 12893 196 17 31 chr9 81492247 81493113 -36369514 + L1PB1 LINE L1 2887 3764 -3103 1832 152 3 10 chr9 81493113 81493402 -36369225 + AluSq SINE Alu 16 302 -11 12893 196 17 31 chr9 81493402 81496512 -36366115 + L1PB1 LINE L1 3764 6812 -55 1785 168 7 10 chr9 81496512 81496815 -36365812 + AluSx SINE Alu 1 302 -10 12893 196 17 31 chr9 81496815 81496871 -36365756 + L1PB1 LINE L1 6812 6867 0 6116 111 10 7 chr9 81496884 81497879 -36364748 + L1PA12 LINE L1 5177 6168 0 1791 232 52 27 chr9 81497879 81498113 -36364514 + L1MB5 LINE L1 4763 4990 -1188 862 170 40 10 chr9 81498113 81498313 -36364314 + L1MA8 LINE L1 6084 6289 -2 2397 70 0 0 chr9 81498323 81498667 -36363960 + AluY SINE Alu 1 344 0 1791 232 52 27 chr9 81498667 81499306 -36363321 + L1MB5 LINE L1 4998 5669 -509 332 179 0 26 chr9 81499310 81499388 -36363239 + L1MA7 LINE L1 6213 6288 -3 1369 184 10 63 chr9 81499499 81499745 -36362882 - MSTB LTR MaLR -141 285 56 2046 150 3 0 chr9 81499745 81500052 -36362575 - AluSg SINE Alu -2 308 1 1369 184 10 63 chr9 81500052 81500104 -36362523 - MSTB LTR MaLR -370 56 3 463 224 37 0 chr9 81500125 81500232 -36362395 + L1MB5 LINE L1 5765 5875 -299 203 330 39 29 chr9 81500240 81500343 -36362284 - MIR SINE MIR -97 165 62 202 289 72 0 chr9 81502078 81502161 -36360466 - L2 LINE L2 0 3313 3225 191 258 34 22 chr9 81502328 81502417 -36360210 + MIR SINE MIR 66 155 -107 273 29 0 0 chr9 81502447 81502481 -36360146 + (CA)n Simple_repeat Simple_repeat 2 35 0 337 241 36 9 chr9 81502497 81502609 -36360018 + MIR SINE MIR 148 262 0 21 0 0 0 chr9 81503526 81503547 -36359080 + AT_rich Low_complexity Low_complexity 1 21 0 2074 112 11 0 chr9 81503771 81504056 -36358571 + AluSg SINE Alu 6 293 -17 552 179 40 20 chr9 81504497 81504627 -36358000 - L1 LINE L1 -1633 4513 4378 872 47 0 0 chr9 81504627 81504733 -36357894 - L1PA4 LINE L1 -1 6154 6049 552 179 40 20 chr9 81504733 81504753 -36357874 - L1 LINE L1 -1768 4378 4360 418 279 61 0 chr9 81504771 81504918 -36357709 + MIR SINE MIR 2 157 -105 23 68 0 0 chr9 81505279 81505323 -36357304 + AT_rich Low_complexity Low_complexity 1 44 0 756 301 53 72 chr9 81505748 81506279 -36356348 + LTR33 LTR ERVL 1 521 0 2052 142 0 14 chr9 81506862 81507188 -36355439 + AluSx SINE Alu 1 312 0 1792 176 56 139 chr9 81508108 81508712 -36353915 - MLT2B3 LTR ERVL 0 554 1 232 247 75 21 chr9 81509034 81509127 -36353500 + L1MCa LINE L1 659 756 -5670 3159 252 32 64 chr9 81509150 81509377 -36353250 + L1MCa LINE L1 2288 2521 -3905 2289 115 3 10 chr9 81509377 81509689 -36352938 - AluSx SINE Alu -2 310 1 3159 252 32 64 chr9 81509689 81510494 -36352133 + L1MCa LINE L1 2521 3251 -3175 2016 42 0 0 chr9 81510494 81510731 -36351896 + L1PA4 LINE L1 5911 6147 -8 3159 252 32 64 chr9 81510731 81511332 -36351295 + L1MCa LINE L1 3251 3870 -2556 26 0 0 0 chr9 81511397 81511423 -36351204 + AT_rich Low_complexity Low_complexity 1 26 0 27 0 0 0 chr9 81511952 81511979 -36350648 + AT_rich Low_complexity Low_complexity 1 27 0 28 61 0 0 chr9 81512044 81512093 -36350534 + AT_rich Low_complexity Low_complexity 1 49 0 37 62 0 0 chr9 81513478 81513543 -36349084 + AT_rich Low_complexity Low_complexity 1 65 0 576 317 35 51 chr9 81513561 81513993 -36348634 + L1M3e LINE L1 1418 1842 -5188 2096 250 24 21 chr9 81513997 81514670 -36347957 + L1M3e LINE L1 3430 4104 -3002 1163 78 7 0 chr9 81514645 81514798 -36347829 + L1P2 LINE L1 6461 6614 -500 * 4013 116 94 110 chr9 81514799 81516334 -36346293 - pTR5 LTR ERV1 -9 2429 69 4002 46 4 2 chr9 81516334 81516836 -36345791 + L1PA5 LINE L1 5652 6154 0 289 191 111 16 chr9 81516841 81516967 -36345660 + L1M3e LINE L1 4100 4237 -2869 660 26 0 0 chr9 81516967 81517068 -36345559 + L1PA5 LINE L1 6061 6161 0 2798 181 107 8 chr9 81517068 81517202 -36345425 + L1 LINE L1 3132 3251 -2895 691 30 0 50 chr9 81517202 81517301 -36345326 + L1PA5 LINE L1 6061 6154 0 2798 181 107 8 chr9 81517301 81517875 -36344752 + L1 LINE L1 3251 3910 -2236 24 77 0 0 chr9 81518507 81518559 -36344068 + AT_rich Low_complexity Low_complexity 1 52 0 2209 233 29 4 chr9 81518562 81519120 -36343507 - L1PA16 LINE L1 -2409 4697 4126 6217 187 61 13 chr9 81519120 81519808 -36342819 + L1PA16 LINE L1 4690 5344 -1782 2443 76 0 13 chr9 81519808 81520122 -36342505 + AluY SINE Alu 1 310 -1 6217 187 61 13 chr9 81520122 81521767 -36340860 + L1PA16 LINE L1 5344 7125 -1 1740 188 18 56 chr9 81521775 81522169 -36340458 - MLT1B LTR MaLR -4 386 8 293 270 0 0 chr9 81522167 81522230 -36340397 + LTR19C LTR ERV1 715 777 -2 * 4670 103 12 25 chr9 81522271 81523021 -36339606 - L1MA1 LINE L1 0 6302 5563 1664 169 48 3 chr9 81523562 81523852 -36338775 + AluSx SINE Alu 1 303 -9 1267 178 55 36 chr9 81524148 81524457 -36338170 - L1MB7 LINE L1 0 6184 5870 563 208 15 3 chr9 81524558 81524709 -36337918 - L1MB7 LINE L1 -338 5840 5691 362 344 78 43 chr9 81525034 81525429 -36337198 - HAL1b LINE L1 -863 485 77 22 0 0 0 chr9 81525879 81525901 -36336726 + AT_rich Low_complexity Low_complexity 1 22 0 4091 156 21 35 chr9 81526631 81527427 -36335200 - LTR1 LTR ERV1 0 785 1 2090 98 14 20 chr9 81528733 81529029 -36333598 + AluSp SINE Alu 1 294 -19 1899 115 3 51 chr9 81529275 81529619 -36333008 + AluSx SINE Alu 1 330 0 379 304 84 81 chr9 81529625 81529994 -36332633 - L1MEd LINE L1 -4873 1246 877 226 315 99 9 chr9 81530213 81530445 -36332182 - HAL1 LINE L1 -134 2373 2121 204 67 0 0 chr9 81530866 81530896 -36331731 + (A)n Simple_repeat Simple_repeat 1 30 0 2282 87 3 3 chr9 81530898 81531196 -36331431 + AluY SINE Alu 1 298 -13 456 284 8 81 chr9 81531904 81532140 -36330487 + MER20 DNA MER1_type 1 219 0 192 219 0 0 chr9 81532944 81533026 -36329601 + (TA)n Simple_repeat Simple_repeat 1 82 0 30 0 0 24 chr9 81533627 81533638 -36328989 + AT_rich Low_complexity Low_complexity 1 11 -29 2302 85 7 3 chr9 81533638 81533945 -36328682 - AluY SINE Alu -3 308 1 30 0 0 24 chr9 81533945 81533974 -36328653 + AT_rich Low_complexity Low_complexity 11 40 0 868 183 78 5 chr9 81533994 81534213 -36328414 - L1MA8 LINE L1 -2 6289 6055 691 12 0 0 chr9 81534386 81534468 -36328159 - L1MA2 LINE L1 -456 5848 5767 280 266 51 76 chr9 81534530 81534688 -36327939 - MLT1G LTR MaLR -2 588 435 346 266 36 43 chr9 81536049 81536188 -36326439 + MIR SINE MIR 76 213 -49 1299 268 56 19 chr9 81536772 81537504 -36325123 + L1ME LINE L1 2584 3342 -2804 315 0 0 0 chr9 81537535 81537570 -36325057 + (TG)n Simple_repeat Simple_repeat 2 36 0 4354 228 35 9 chr9 81537682 81538497 -36324130 + L1MA10 LINE L1 4788 5661 -673 630 99 0 0 chr9 81538497 81538588 -36324039 + (TA)n Simple_repeat Simple_repeat 2 92 0 4354 228 35 9 chr9 81538588 81539265 -36323362 + L1MA10 LINE L1 5661 6319 -15 750 262 77 10 chr9 81539351 81539664 -36322963 + L1ME LINE L1 4269 4602 -1544 2382 199 23 13 chr9 81539677 81540205 -36322422 + L1MC3 LINE L1 7233 7765 -20 1964 263 97 12 chr9 81541277 81542022 -36320605 + L1MC4a LINE L1 6974 7781 -27 26 0 0 0 chr9 81542038 81542064 -36320563 + AT_rich Low_complexity Low_complexity 1 26 0 22 70 0 0 chr9 81542155 81542198 -36320429 + AT_rich Low_complexity Low_complexity 1 43 0 289 211 26 26 chr9 81542834 81542910 -36319717 - MIR SINE MIR -87 175 100 1628 225 20 20 chr9 81542916 81543316 -36319311 + MLT1C LTR MaLR 1 400 -67 2796 228 19 7 chr9 81593342 81594035 -36268592 + L1 LINE L1 3881 4581 -1565 348 295 127 6 chr9 81594045 81594218 -36268409 + L1ME LINE L1 5263 5456 -706 22 0 0 0 chr9 81594922 81594944 -36267683 + AT_rich Low_complexity Low_complexity 1 22 0 1815 151 3 35 chr9 81595378 81595690 -36266937 + AluSx SINE Alu 1 302 -10 25 31 0 0 chr9 81595982 81596014 -36266613 + AT_rich Low_complexity Low_complexity 1 32 0 227 196 22 43 chr9 81596085 81596225 -36266402 + (TATAA)n Simple_repeat Simple_repeat 1 136 0 1604 196 0 4 chr9 81596754 81597035 -36265592 + AluJb SINE Alu 10 289 -23 21 0 0 0 chr9 81597888 81597909 -36264718 + AT_rich Low_complexity Low_complexity 1 21 0 279 0 0 0 chr9 81599219 81599250 -36263377 + (TG)n Simple_repeat Simple_repeat 2 32 0 744 142 16 16 chr9 81599261 81599388 -36263239 - FLAM_C SINE Alu -16 127 1 237 245 0 0 chr9 81600756 81600805 -36261822 + (CATATA)n Simple_repeat Simple_repeat 3 51 0 24 0 0 0 chr9 81600840 81600864 -36261763 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr9 81600899 81600923 -36261704 + AT_rich Low_complexity Low_complexity 1 24 0 24 67 0 0 chr9 81601216 81601261 -36261366 + AT_rich Low_complexity Low_complexity 1 45 0 209 132 26 0 chr9 81601270 81601308 -36261319 + (TA)n Simple_repeat Simple_repeat 2 40 0 232 310 62 55 chr9 81602223 81602368 -36260259 + MIR SINE MIR 13 158 -104 260 163 20 0 chr9 81602399 81602448 -36260179 - L1MA6 LINE L1 -360 5940 5891 1680 178 13 0 chr9 81602568 81602872 -36259755 - AluJb SINE Alu -2 310 3 23 54 0 0 chr9 81603375 81603412 -36259215 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr9 81603474 81603498 -36259129 + AT_rich Low_complexity Low_complexity 1 24 0 186 43 0 0 chr9 81603803 81603826 -36258801 + (TA)n Simple_repeat Simple_repeat 2 24 0 353 143 71 0 chr9 81603829 81603899 -36258728 + L1MA9 LINE L1 6238 6312 0 443 314 128 63 chr9 81604124 81604490 -36258137 + L2 LINE L2 2922 3311 -2 209 211 19 0 chr9 81604766 81604818 -36257809 + GA-rich Low_complexity Low_complexity 1 53 0 735 321 63 46 chr9 81605501 81605977 -36256650 + L1M3b LINE L1 1 484 -5797 649 276 41 5 chr9 81606352 81606548 -36256079 + L1M3b LINE L1 1122 1324 -4957 * 7553 169 27 16 chr9 81606547 81607152 -36255475 + L1MA6 LINE L1 1173 1770 -5795 183 42 0 0 chr9 81607152 81607176 -36255451 + (CAGAGA)n Simple_repeat Simple_repeat 2 25 0 7553 169 27 16 chr9 81607176 81607943 -36254684 + L1MA6 LINE L1 1770 2560 -5005 5720 220 16 7 chr9 81607937 81609276 -36253351 + L1MA6 LINE L1 3762 5113 -2452 * 2595 132 11 18 chr9 81609295 81609734 -36252893 - L1MA1 LINE L1 -185 6117 5682 * 4725 189 24 1 chr9 81609731 81610640 -36251987 + L1MA6 LINE L1 6781 7710 -9 24 32 0 0 chr9 81610991 81611022 -36251605 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr9 81611729 81611753 -36250874 + AT_rich Low_complexity Low_complexity 1 24 0 27 49 0 0 chr9 81611949 81611990 -36250637 + AT_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chr9 81612479 81612501 -36250126 + AT_rich Low_complexity Low_complexity 1 22 0 21 82 0 0 chr9 81612526 81612575 -36250052 + AT_rich Low_complexity Low_complexity 1 49 0 1697 205 65 18 chr9 81613399 81613842 -36248785 - MER101 LTR ERV1 0 474 11 1548 132 8 16 chr9 81614021 81614278 -36248349 + AluJb SINE Alu 9 263 -49 417 141 0 0 chr9 81614293 81614378 -36248249 + (TC)n Simple_repeat Simple_repeat 1 85 0 198 0 0 0 chr9 81614736 81614758 -36247869 + (TTA)n Simple_repeat Simple_repeat 3 24 0 984 35 0 0 chr9 81614760 81614875 -36247752 - L1PA3 LINE L1 -17 6138 6024 369 317 64 34 chr9 81615540 81615805 -36246822 + LTR16B LTR ERVL 185 457 -7 1183 311 51 18 chr9 81616885 81617089 -36245538 + L1MC4 LINE L1 6489 6685 -1357 474 75 0 0 chr9 81617089 81617156 -36245471 + (CATA)n Simple_repeat Simple_repeat 3 69 0 1183 311 51 18 chr9 81617156 81617523 -36245104 + L1MC4 LINE L1 6685 7079 -963 195 42 0 0 chr9 81617859 81617883 -36244744 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 419 219 10 117 chr9 81617885 81618090 -36244537 + L1ME2 LINE L1 5880 6062 -102 679 249 18 0 chr9 81618140 81618309 -36244318 + L1MA10 LINE L1 6161 6332 -2 218 191 24 0 chr9 81618453 81618495 -36244132 + (TG)n Simple_repeat Simple_repeat 2 44 0 410 240 31 0 chr9 81619628 81619724 -36242903 + MLT1I LTR MaLR 311 409 0 695 223 0 0 chr9 81621409 81621539 -36241088 + FLAM_C SINE Alu 4 133 -10 440 156 22 44 chr9 81621549 81621639 -36240988 - MLT2B2 LTR ERVL -265 289 202 1454 169 67 12 chr9 81621640 81621971 -36240656 - L1MA8 LINE L1 -1 6290 5942 999 178 5 0 chr9 81621984 81622181 -36240446 + L1M2 LINE L1 5254 5451 -840 892 126 26 7 chr9 81622205 81622356 -36240271 - MLT2B2 LTR ERVL -356 159 6 596 190 0 0 chr9 81622356 81622456 -36240171 + MER58B DNA MER1_type 236 335 -6 499 268 142 24 chr9 81623403 81623608 -36239019 - MIR SINE MIR -3 259 31 653 287 36 5 chr9 81623780 81623975 -36238652 - MIR SINE MIR -49 213 13 210 37 0 0 chr9 81624078 81624105 -36238522 + (CA)n Simple_repeat Simple_repeat 2 28 0 229 361 57 25 chr9 81625172 81625294 -36237333 + MIR SINE MIR 125 250 -12 189 364 124 0 chr9 81625727 81625848 -36236779 - L2 LINE L2 -3 3310 3175 236 299 0 0 chr9 81626563 81626630 -36235997 + (CAT)n Simple_repeat Simple_repeat 1 67 0 206 295 0 33 chr9 81626640 81626701 -36235926 - MIR SINE MIR -174 88 30 282 273 118 9 chr9 81627023 81627133 -36235494 + MIR SINE MIR 127 248 -14 252 0 0 0 chr9 81627521 81627549 -36235078 + (TC)n Simple_repeat Simple_repeat 1 28 0 1395 188 70 0 chr9 81627698 81627969 -36234658 + AluJb SINE Alu 1 290 -22 385 305 52 26 chr9 81628089 81628243 -36234384 + MIR SINE MIR 45 202 -60 39430 77 12 3 chr9 81629656 81635748 -36226879 - L1PA5 LINE L1 -4 6150 4 46 62 0 0 chr9 81635920 81636001 -36226626 + AT_rich Low_complexity Low_complexity 1 81 0 23 33 0 0 chr9 81636122 81636152 -36226475 + AT_rich Low_complexity Low_complexity 1 30 0 3895 185 5 17 chr9 81637032 81637442 -36225185 - L1P LINE L1 -3578 2568 2155 200 59 29 0 chr9 81637442 81637476 -36225151 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 8485 68 6 170 chr9 81637476 81639107 -36223520 - SVA Other Other -23 1363 1 3895 185 5 17 chr9 81639107 81639477 -36223150 - L1P LINE L1 -3989 2157 1796 * 5320 164 14 12 chr9 81639469 81639502 -36223125 + L1PA13 LINE L1 4232 4263 -1905 1830 179 7 0 chr9 81639502 81639809 -36222818 - AluSx SINE Alu -3 309 1 5320 164 14 12 chr9 81639809 81641033 -36221594 + L1PA13 LINE L1 4263 5495 -673 2088 139 3 7 chr9 81641033 81641335 -36221292 + AluSq SINE Alu 1 301 -12 5320 164 14 12 chr9 81641335 81641822 -36220805 + L1PA13 LINE L1 5495 5980 -188 1049 114 38 16 chr9 81641950 81642134 -36220493 - MLT2A1 LTR ERVL -255 189 2 740 93 0 0 chr9 81642134 81642242 -36220385 + L1PA13 LINE L1 6056 6163 0 27 49 0 0 chr9 81646747 81646788 -36215839 + AT_rich Low_complexity Low_complexity 1 41 0 40 21 0 0 chr9 81646850 81646897 -36215730 + AT_rich Low_complexity Low_complexity 1 47 0 337 169 0 39 chr9 81647071 81647148 -36215479 - MLT1F1 LTR MaLR -24 543 470 26 0 0 0 chr9 81647462 81647488 -36215139 + AT_rich Low_complexity Low_complexity 1 26 0 1684 106 7 49 chr9 81648117 81648401 -36214226 + L1P5 LINE L1 5504 5775 -376 1918 169 6 0 chr9 81648418 81648737 -36213890 + MLT-int LTR MaLR 77 397 -1338 1460 138 54 3 chr9 81648745 81649043 -36213584 - L1P LINE L1 -2454 3692 3380 1256 230 112 39 chr9 81649519 81649876 -36212751 + MLT1D LTR MaLR 1 383 -122 306 0 0 0 chr9 81651960 81651994 -36210633 + (TG)n Simple_repeat Simple_repeat 1 34 0 449 222 104 30 chr9 81652082 81652217 -36210410 - L1ME1 LINE L1 -30 6136 5992 1231 261 144 11 chr9 81652260 81652704 -36209923 - L1ME1 LINE L1 -281 6680 6181 1926 306 56 65 chr9 81652794 81652952 -36209675 - L1ME1 LINE L1 -877 6064 5906 2067 138 0 0 chr9 81652952 81653242 -36209385 - AluSc SINE Alu -19 290 1 1926 306 56 65 chr9 81653242 81654368 -36208259 - L1ME1 LINE L1 -1035 5906 4791 1164 282 127 16 chr9 81654435 81655550 -36207077 - L1ME1 LINE L1 -3067 3874 2683 29 0 0 0 chr9 81655561 81655590 -36207037 + AT_rich Low_complexity Low_complexity 1 29 0 11693 219 49 22 chr9 81655674 81656047 -36206580 - L1PA16 LINE L1 -1 7749 7388 1855 169 52 9 chr9 81656047 81656396 -36206231 - THE1B LTR MaLR 0 364 1 10402 108 18 31 chr9 81656396 81657996 -36204631 - THE1B-int LTR MaLR 0 1580 1 2114 148 28 6 chr9 81657996 81658348 -36204279 - THE1B LTR MaLR 0 364 5 11693 219 49 22 chr9 81658348 81663442 -36199185 - L1PA16 LINE L1 -361 7389 2199 368 253 55 0 chr9 81663719 81663810 -36198817 - L1PA16 LINE L1 -5400 2181 2086 465 328 142 10 chr9 81664244 81664631 -36197996 - L1ME1 LINE L1 -5968 455 18 881 183 22 0 chr9 81664863 81665043 -36197584 - L1MD1 LINE L1 -1 6241 6058 25 0 0 0 chr9 81665264 81665289 -36197338 + AT_rich Low_complexity Low_complexity 1 25 0 2085 134 0 13 chr9 81665565 81665878 -36196749 - AluSx SINE Alu -3 309 1 255 161 0 0 chr9 81665964 81666020 -36196607 + CT-rich Low_complexity Low_complexity 2 57 0 1269 242 34 19 chr9 81666230 81666982 -36195645 + L1M3 LINE L1 4824 5696 -638 2181 193 48 11 chr9 81667143 81667584 -36195043 - MSTB2 LTR MaLR 0 457 1 791 237 6 0 chr9 81668267 81668423 -36194204 - FRAM SINE Alu -20 156 1 232 303 0 0 chr9 81670331 81670397 -36192230 - L1MC5 LINE L1 -867 7094 7029 468 307 0 7 chr9 81670610 81670750 -36191877 - L1MC4a LINE L1 -947 6861 6723 346 331 43 50 chr9 81670857 81671138 -36191489 - L1M4 LINE L1 -3734 2412 2134 218 175 0 0 chr9 81671427 81671467 -36191160 + (CA)n Simple_repeat Simple_repeat 1 40 0 376 299 68 65 chr9 81671734 81671984 -36190643 - L1M4 LINE L1 -1836 4310 4057 1496 203 31 127 chr9 81671984 81672660 -36189967 + LTR9 LTR ERV1 2 612 0 376 299 68 65 chr9 81672660 81672747 -36189880 - L1M4 LINE L1 -2089 4057 3972 361 86 86 0 chr9 81672755 81672825 -36189802 - L1MB7 LINE L1 0 6184 6109 2180 226 22 20 chr9 81672828 81673174 -36189453 - L1MB8 LINE L1 -311 5867 5522 1794 155 10 3 chr9 81673174 81673464 -36189163 - AluSx SINE Alu -15 297 6 2180 226 22 20 chr9 81673464 81673792 -36188835 - L1MB8 LINE L1 -656 5522 5196 917 216 100 4 chr9 81673811 81674052 -36188575 - L1MC2 LINE L1 -6 6338 6075 1715 264 39 30 chr9 81674071 81674610 -36188017 - MER74A LTR ERVL -14 544 1 562 200 37 37 chr9 81674610 81674745 -36187882 - L1MC2 LINE L1 -265 6079 5945 1526 98 86 0 chr9 81674745 81674979 -36187648 + MER41A LTR ERV1 1 254 -300 2108 192 121 2 chr9 81674979 81675516 -36187111 - L1MC2 LINE L1 -2087 5908 5308 698 267 63 4 chr9 81675498 81675753 -36186874 + L1MA4 LINE L1 6020 6289 -11 * 1600 282 30 54 chr9 81675768 81676432 -36186195 - L1M4 LINE L1 -5879 663 16 23 33 0 0 chr9 81676531 81676561 -36186066 + AT_rich Low_complexity Low_complexity 1 30 0 3373 132 65 7 chr9 81676871 81677471 -36185156 - LTR24C LTR ERV1 0 635 1 2602 113 75 7 chr9 81678318 81678697 -36183930 + MLT2A1 LTR ERVL 1 412 -32 414 0 0 0 chr9 81678697 81678743 -36183884 + (TA)n Simple_repeat Simple_repeat 2 47 0 2602 113 75 7 chr9 81678743 81678779 -36183848 + MLT2A1 LTR ERVL 412 444 0 22 0 0 0 chr9 81679761 81679783 -36182844 + AT_rich Low_complexity Low_complexity 1 22 0 336 230 71 0 chr9 81680064 81680177 -36182450 - L1MC4 LINE L1 -8 8034 7914 684 266 41 41 chr9 81680245 81680561 -36182066 - L1MC4 LINE L1 -152 7890 7575 448 341 24 6 chr9 81681248 81681415 -36181212 + MIR SINE MIR 74 243 -19 21 89 0 0 chr9 81681901 81681957 -36180670 + AT_rich Low_complexity Low_complexity 1 56 0 298 336 74 23 chr9 81681961 81682178 -36180449 - MIR SINE MIR -1 261 34 245 200 77 15 chr9 81682343 81682408 -36180219 - MLT1L LTR MaLR -63 552 484 337 316 0 0 chr9 81682804 81682918 -36179709 - MER103 DNA DNA -48 118 5 235 258 169 11 chr9 81683883 81683972 -36178655 - MIR SINE MIR -16 246 144 3974 144 48 14 chr9 81684206 81684894 -36177733 + MER50 LTR ERV1 1 711 -23 336 232 0 0 chr9 81684957 81685026 -36177601 - MER20 DNA MER1_type -1 218 150 3096 188 27 14 chr9 81685436 81686028 -36176599 - MER6A DNA MER2_type 0 605 6 2151 149 8 24 chr9 81686609 81686979 -36175648 - THE1B LTR MaLR 0 364 1 622 325 10 0 chr9 81686984 81687181 -36175446 - LTR16B LTR ERVL -2 462 264 247 141 65 18 chr9 81687583 81687753 -36174874 + (TA)n Simple_repeat Simple_repeat 1 178 0 2007 136 7 3 chr9 81687824 81688133 -36174494 - AluSx SINE Alu -2 310 1 2930 106 29 2 chr9 81690967 81691411 -36171216 + L1MA1 LINE L1 5847 6302 0 230 258 167 0 chr9 81692299 81692365 -36170262 + LTR40c LTR ERVL 35 111 -354 2112 137 3 0 chr9 81692391 81692698 -36169929 + AluSq SINE Alu 1 308 -5 37 39 0 0 chr9 81692821 81692872 -36169755 + AT_rich Low_complexity Low_complexity 1 51 0 296 348 28 52 chr9 81692883 81693133 -36169494 + HERVL LTR ERVL 1915 2158 -3496 23 78 0 0 chr9 81693364 81693415 -36169212 + AT_rich Low_complexity Low_complexity 1 51 0 294 29 0 0 chr9 81693668 81693703 -36168924 + (CA)n Simple_repeat Simple_repeat 1 35 0 1962 121 10 13 chr9 81693704 81694009 -36168618 + L1PB1 LINE L1 5794 6097 -54 24 0 0 0 chr9 81694009 81694033 -36168594 + AT_rich Low_complexity Low_complexity 1 24 0 511 180 0 20 chr9 81694293 81694393 -36168234 + MER4A LTR ERV1 1 98 -566 1959 111 9 27 chr9 81694393 81694744 -36167883 + MER4A LTR ERV1 261 664 0 1881 214 24 36 chr9 81694750 81695165 -36167462 + MSTB1 LTR MaLR 21 430 -2 545 319 48 85 chr9 81695181 81695677 -36166950 - L2 LINE L2 -534 2780 2303 313 301 42 51 chr9 81695859 81696075 -36166552 + L1M4 LINE L1 2771 2984 -3162 24 32 0 0 chr9 81696101 81696132 -36166495 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr9 81696657 81696680 -36165947 + AT_rich Low_complexity Low_complexity 1 23 0 14660 199 102 11 chr9 81697893 81697940 -36164687 - L1M1 LINE L1 -733 6840 6799 4893 128 18 8 chr9 81697940 81698773 -36163854 - L1MA2 LINE L1 -8 6296 5456 14660 199 102 11 chr9 81698773 81704905 -36157722 - L1M1 LINE L1 -774 6799 12 711 291 17 26 chr9 81705145 81705379 -36157248 + MIR SINE MIR 22 253 -9 26 74 0 0 chr9 81705432 81705486 -36157141 + AT_rich Low_complexity Low_complexity 1 54 0 1779 116 6 88 chr9 81705510 81705829 -36156798 - AluSx SINE Alu -15 297 5 331 263 22 95 chr9 81705881 81705939 -36156688 - L1ME LINE L1 -302 5819 5758 770 270 28 0 chr9 81705939 81706150 -36156477 - MER20 DNA MER1_type -2 217 1 331 263 22 95 chr9 81706150 81706270 -36156357 - L1ME LINE L1 -363 5758 5654 485 301 67 34 chr9 81706804 81707013 -36155614 + MIR SINE MIR 36 251 -11 24 0 0 0 chr9 81707241 81707265 -36155362 + AT_rich Low_complexity Low_complexity 1 24 0 1924 93 10 55 chr9 81707283 81707573 -36155054 - AluSc SINE Alu -30 279 3 376 302 55 75 chr9 81707801 81708185 -36154442 + L1MEd LINE L1 798 1173 -4946 26 50 0 0 chr9 81708366 81708406 -36154221 + AT_rich Low_complexity Low_complexity 1 40 0 2025 138 0 0 chr9 81708477 81708773 -36153854 - AluSx SINE Alu -16 296 1 1520 180 53 8 chr9 81708988 81709434 -36153193 - L1PA16 LINE L1 -725 5441 4975 3370 150 64 37 chr9 81709435 81709596 -36153031 + L1PA16 LINE L1 5461 5616 -550 1914 112 35 11 chr9 81709596 81709906 -36152721 + AluSq SINE Alu 5 313 0 3370 150 64 37 chr9 81709906 81710412 -36152215 + L1PA16 LINE L1 5616 6146 -20 262 255 71 10 chr9 81710414 81710512 -36152115 + L1MEd LINE L1 2932 3035 -3094 28 48 0 0 chr9 81711140 81711182 -36151445 + AT_rich Low_complexity Low_complexity 1 42 0 504 277 148 0 chr9 81711218 81711373 -36151254 - MIR SINE MIR -21 241 64 22 35 0 0 chr9 81711437 81711466 -36151161 + AT_rich Low_complexity Low_complexity 1 29 0 1616 149 16 107 chr9 81711510 81711892 -36150735 - MER7A DNA MER2_type -1 345 1 243 280 21 0 chr9 81712024 81712117 -36150510 + (TA)n Simple_repeat Simple_repeat 1 95 0 281 195 11 23 chr9 81712493 81712580 -36150047 + L1ME4a LINE L1 5830 5915 -206 320 300 0 27 chr9 81712749 81712859 -36149768 - MLT1K LTR MaLR -12 576 470 27 29 0 0 chr9 81713050 81713084 -36149543 + AT_rich Low_complexity Low_complexity 1 34 0 680 189 14 14 chr9 81713210 81713358 -36149269 - L1P4 LINE L1 -2229 3917 3770 327 288 11 54 chr9 81713376 81713560 -36149067 + (CATATA)n Simple_repeat Simple_repeat 4 179 0 213 91 36 18 chr9 81713913 81713968 -36148659 + (TCTA)n Simple_repeat Simple_repeat 1 56 0 266 287 23 0 chr9 81714036 81714123 -36148504 - L1ME LINE L1 -518 5603 5515 4745 170 18 84 chr9 81715413 81715659 -36146968 + L1MA10 LINE L1 4995 5256 -1078 1545 185 3 23 chr9 81715659 81715962 -36146665 - AluJb SINE Alu -15 297 1 4745 170 18 84 chr9 81715962 81717136 -36145491 + L1MA10 LINE L1 5256 6333 -1 320 354 46 26 chr9 81717740 81717935 -36144692 - MIR SINE MIR -36 226 28 23 33 0 0 chr9 81718016 81718046 -36144581 + AT_rich Low_complexity Low_complexity 1 30 0 628 236 0 0 chr9 81718047 81718174 -36144453 - FRAM SINE Alu -24 152 26 30 45 0 0 chr9 81718254 81718298 -36144329 + AT_rich Low_complexity Low_complexity 1 44 0 200 309 106 0 chr9 81718793 81718887 -36143740 - MIR SINE MIR -112 150 47 1558 203 80 14 chr9 81718887 81719251 -36143376 - MLT1B LTR MaLR 0 390 3 358 234 19 28 chr9 81719415 81719522 -36143105 + T-rich Low_complexity Low_complexity 4 109 0 846 265 55 76 chr9 81719665 81720087 -36142540 - L1ME LINE L1 -5621 449 37 233 301 36 12 chr9 81720669 81720752 -36141875 + MIR SINE MIR 31 115 -147 1847 216 28 6 chr9 81721383 81721745 -36140882 + Tigger7 DNA MER2_type 1 370 -2117 289 176 0 0 chr9 81721787 81721877 -36140750 - AluJ/FRAM SINE Alu 0 321 232 617 221 8 8 chr9 81721890 81722021 -36140606 + Tigger7 DNA MER2_type 2456 2586 -1 2355 78 0 0 chr9 81722130 81722436 -36140191 + AluY SINE Alu 1 306 -5 189 0 0 0 chr9 81723016 81723037 -36139590 + (TC)n Simple_repeat Simple_repeat 1 21 0 1057 324 28 22 chr9 81723178 81723721 -36138906 - L1ME3A LINE L1 -22 6148 5603 246 167 0 0 chr9 81723732 81723792 -36138835 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 301 229 24 12 chr9 81723794 81723877 -36138750 - L1ME3A LINE L1 -2413 5582 5499 323 196 137 3 chr9 81724071 81724162 -36138465 - MLT1I LTR MaLR -238 171 96 1014 298 76 21 chr9 81724290 81725190 -36137437 - L1ME3A LINE L1 -745 5401 4527 1568 185 98 6 chr9 81725918 81726275 -36136352 - MLT1B LTR MaLR 0 390 1 1886 145 0 10 chr9 81726971 81727295 -36135332 + AluSx SINE Alu 1 321 0 30 59 0 0 chr9 81727741 81727792 -36134835 + AT_rich Low_complexity Low_complexity 1 51 0 254 318 99 15 chr9 81728005 81728206 -36134421 - L1MC4a LINE L1 -1878 5930 5713 871 232 122 45 chr9 81728212 81728548 -36134079 + MLT1A1 LTR MaLR 4 365 0 2294 161 15 3 chr9 81728548 81728939 -36133688 + MLT1A1-int LTR MaLR 2 397 -1338 3663 28 4 2 chr9 81728947 81729407 -36133220 - L1PA4 LINE L1 -2454 3692 3232 13958 35 1 0 chr9 81729407 81731876 -36130751 + L1PA4 LINE L1 3690 6152 -3 4438 234 90 53 chr9 81731877 81733171 -36129456 + MLT1A1-int LTR MaLR 393 1735 0 1430 222 30 43 chr9 81733171 81733541 -36129086 + MLT1A1 LTR MaLR 1 365 0 24 32 0 0 chr9 81733724 81733755 -36128872 + AT_rich Low_complexity Low_complexity 1 31 0 1515 211 102 19 chr9 81733982 81734451 -36128176 + L1MA9 LINE L1 5767 6274 -38 22 80 0 0 chr9 81734483 81734533 -36128094 + AT_rich Low_complexity Low_complexity 1 50 0 198 128 0 0 chr9 81735486 81735525 -36127102 + (TG)n Simple_repeat Simple_repeat 2 40 0 26 0 0 0 chr9 81736862 81736888 -36125739 + AT_rich Low_complexity Low_complexity 1 26 0 234 321 30 45 chr9 81737568 81737702 -36124925 - MIR SINE MIR 0 262 131 23 54 0 0 chr9 81737986 81738023 -36124604 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr9 81738339 81738369 -36124258 + AT_rich Low_complexity Low_complexity 1 30 0 37 23 0 0 chr9 81738414 81738458 -36124169 + AT_rich Low_complexity Low_complexity 1 44 0 260 299 0 0 chr9 81738851 81738928 -36123699 - MIR SINE MIR -81 181 105 484 266 33 16 chr9 81738979 81739163 -36123464 - HsTC2 DNA Tc2 -3 1895 1709 528 208 42 8 chr9 81739249 81739369 -36123258 - MER41B LTR ERV1 -87 548 425 253 156 16 16 chr9 81739399 81739463 -36123164 + (TA)n Simple_repeat Simple_repeat 1 64 0 241 367 75 5 chr9 81739473 81739661 -36122966 - HsTC2 DNA Tc2 -1694 204 4 183 100 0 0 chr9 81739870 81739900 -36122727 + (T)n Simple_repeat Simple_repeat 1 30 0 2118 108 3 3 chr9 81739995 81740292 -36122335 + AluSg SINE Alu 1 297 -13 234 222 0 16 chr9 81740658 81740721 -36121906 - L1MCb LINE L1 -5415 630 569 689 306 108 36 chr9 81740824 81741324 -36121303 - L1MCb LINE L1 -5483 562 27 857 172 0 2 chr9 81741398 81741654 -36120973 - AluJb SINE Alu 0 312 1 1398 272 57 57 chr9 81742855 81744668 -36117959 - L1ME1 LINE L1 -268 5898 3881 225 368 38 0 chr9 81744696 81744829 -36117798 + L1M4 LINE L1 2606 2743 -3403 1056 242 83 50 chr9 81744880 81745276 -36117351 + LTR40b LTR ERVL 54 462 0 2605 311 59 62 chr9 81745277 81746899 -36115728 + HERVL40 LTR ERVL 1 1617 -3913 1557 288 11 25 chr9 81746903 81747347 -36115280 + HERVL40 LTR ERVL 2045 2482 -3048 4258 177 69 49 chr9 81747347 81748397 -36114230 + MER11C LTR ERVK 1 1071 0 495 335 12 0 chr9 81748397 81748558 -36114069 + HERVL40 LTR ERVL 2477 2639 -2891 186 256 163 12 chr9 81749057 81749143 -36113484 + L3 LINE CR1 366 464 -1113 26 88 0 0 chr9 81749934 81750002 -36112625 + AT_rich Low_complexity Low_complexity 1 68 0 275 207 17 0 chr9 81751016 81751074 -36111553 + Charlie5 DNA MER1_type 7 65 -2547 25 65 0 0 chr9 81751630 81751676 -36110951 + AT_rich Low_complexity Low_complexity 1 46 0 381 188 0 0 chr9 81752397 81752466 -36110161 + L1PA16 LINE L1 4034 4102 -2044 5237 190 42 31 chr9 81752466 81754553 -36108074 + L1PA16 LINE L1 4058 6166 0 371 312 132 11 chr9 81755126 81755315 -36107312 - MIR SINE MIR -49 213 2 210 185 0 19 chr9 81755425 81755479 -36107148 + A-rich Low_complexity Low_complexity 4 56 0 694 211 13 7 chr9 81756225 81756377 -36106250 - L1MA10 LINE L1 -7 6327 6175 874 237 41 38 chr9 81756378 81756669 -36105958 - L1ME1 LINE L1 -152 6014 5723 22 0 0 0 chr9 81756888 81756910 -36105717 + AT_rich Low_complexity Low_complexity 1 22 0 5119 171 26 1 chr9 81757013 81758346 -36104281 + L1MA4 LINE L1 4301 5664 -641 832 165 6 0 chr9 81758346 81758501 -36104126 + L1MA4 LINE L1 6126 6284 -16 31 82 0 0 chr9 81758505 81758578 -36104049 + AT_rich Low_complexity Low_complexity 1 73 0 239 236 0 56 chr9 81758768 81758840 -36103787 + CT-rich Low_complexity Low_complexity 3 70 0 1097 256 75 60 chr9 81759070 81759416 -36103211 + L1MC4 LINE L1 7160 7389 -419 5285 143 20 0 chr9 81759416 81760453 -36102174 + L1PA16 LINE L1 5104 6157 -9 1097 256 75 60 chr9 81760453 81760748 -36101879 + L1MC4 LINE L1 7389 7678 -130 5220 162 29 41 chr9 81763478 81764562 -36098065 - MER11C LTR ERVK 0 1071 1 2434 112 95 5 chr9 81764636 81765047 -36097580 - LTR7 LTR ERV1 -2 448 1 335 328 156 33 chr9 81765831 81766345 -36096282 + L2 LINE L2 2492 3061 -252 275 241 52 43 chr9 81766423 81766539 -36096088 - L1MC4 LINE L1 -15 8027 7911 596 251 98 15 chr9 81766790 81766993 -36095634 + MIR SINE MIR 18 237 -25 234 209 0 0 chr9 81767021 81767064 -36095563 + L2 LINE L2 3271 3313 0 695 361 16 10 chr9 81767165 81767475 -36095152 - MLT1J1 LTR MaLR -133 313 2 228 245 160 66 chr9 81767868 81767974 -36094653 + L2 LINE L2 1827 1942 -1372 8126 50 5 2 chr9 81769690 81771488 -36091139 - L1PA5 LINE L1 -6 6148 4347 23 54 0 0 chr9 81771494 81771531 -36091096 + AT_rich Low_complexity Low_complexity 1 37 0 235 319 99 0 chr9 81771758 81771849 -36090778 + MIR SINE MIR 98 197 -65 409 303 215 5 chr9 81771872 81772067 -36090560 - MIR SINE MIR -21 241 6 459 245 0 0 chr9 81772075 81772173 -36090454 + MER67D LTR ERV1 1 98 -416 868 198 35 50 chr9 81772205 81772407 -36090220 + MER67D LTR ERV1 237 435 -79 253 377 82 10 chr9 81772834 81773041 -36089586 + L2 LINE L2 1161 1382 -1932 312 331 187 33 chr9 81773157 81773644 -36088983 + L2 LINE L2 1754 2315 -999 1804 61 18 0 chr9 81773657 81773886 -36088741 - AluY SINE Alu -20 291 59 308 363 146 17 chr9 81774041 81774336 -36088291 - L3 LINE CR1 -385 1192 860 22 0 0 0 chr9 81775070 81775092 -36087535 + AT_rich Low_complexity Low_complexity 1 22 0 454 293 50 0 chr9 81775692 81775873 -36086754 - L1MEc LINE L1 -6161 235 46 894 292 52 55 chr9 81775901 81776630 -36085997 - L1MEc LINE L1 -3663 2552 1868 2094 205 11 9 chr9 81776646 81777104 -36085523 - L1MC1 LINE L1 0 6333 5875 740 240 15 5 chr9 81777122 81777326 -36085301 - L1MC1 LINE L1 -1038 5108 4903 233 234 143 26 chr9 81778330 81778407 -36084220 + MIR3 SINE MIR 92 177 -31 2042 135 0 0 chr9 81779170 81779473 -36083154 + AluSq SINE Alu 1 303 -10 255 270 90 20 chr9 81780382 81780482 -36082145 - HAL1b LINE L1 -976 372 266 320 282 171 12 chr9 81780979 81781149 -36081478 - L1MC4 LINE L1 -1396 6646 6450 213 39 0 0 chr9 81781293 81781319 -36081308 + (TTCTCC)n Simple_repeat Simple_repeat 3 28 0 1932 135 0 0 chr9 81781319 81781593 -36081034 - AluSc SINE Alu -28 281 8 206 207 35 17 chr9 81782667 81782725 -36079902 + GA-rich Low_complexity Low_complexity 2 60 0 297 330 159 9 chr9 81784529 81784856 -36077771 - L3 LINE CR1 -73 1504 1129 226 309 11 11 chr9 81786688 81786782 -36075845 + CT-rich Low_complexity Low_complexity 3 96 0 22 35 0 0 chr9 81786968 81786997 -36075630 + AT_rich Low_complexity Low_complexity 1 29 0 1804 91 0 107 chr9 81787163 81787481 -36075146 + AluSc SINE Alu 1 284 -25 2224 78 0 0 chr9 81787481 81787801 -36074826 + AluY SINE Alu 1 320 0 184 413 25 0 chr9 81788194 81788274 -36074353 + L2 LINE L2 3171 3252 -61 233 328 109 25 chr9 81789266 81789332 -36073295 + MIR3 SINE MIR 31 90 -118 1827 250 26 16 chr9 81789332 81789832 -36072795 + MLT1D LTR MaLR 1 505 0 233 328 109 25 chr9 81789832 81789884 -36072743 + MIR3 SINE MIR 90 159 -49 1478 140 7 39 chr9 81790008 81790434 -36072193 + MER4C LTR ERV1 1 465 0 1297 216 97 55 chr9 81790473 81790853 -36071774 + MSTD LTR MaLR 1 396 0 2119 103 0 0 chr9 81792182 81792520 -36070107 + AluY SINE Alu 1 338 0 215 257 0 81 chr9 81792540 81792614 -36070013 - L2 LINE L2 -1 3271 3204 816 174 24 52 chr9 81792698 81792911 -36069716 - L1MA8 LINE L1 -141 6150 5944 407 126 99 63 chr9 81792908 81793019 -36069608 + L1MA8 LINE L1 6148 6262 -29 * 256 200 31 0 chr9 81793029 81793094 -36069533 + L1MA8 LINE L1 6222 6288 -3 328 319 35 9 chr9 81793228 81793341 -36069286 - L1MEc LINE L1 -4376 2746 2631 275 293 130 54 chr9 81793416 81793745 -36068882 - L1MEc LINE L1 -4758 2183 1804 1369 139 8 4 chr9 81793745 81793982 -36068645 - L1MA4 LINE L1 -5 6295 6058 275 293 130 54 chr9 81793982 81794136 -36068491 - L1MEc LINE L1 -5137 1804 1663 1060 281 55 25 chr9 81794330 81794732 -36067895 - L1MEc LINE L1 -5178 1245 832 330 318 63 35 chr9 81794782 81795429 -36067198 - L1MEc LINE L1 -5432 991 30 501 297 97 31 chr9 81795598 81795958 -36066669 + L1MC4a LINE L1 5603 5986 -1822 33 25 0 0 chr9 81796080 81796120 -36066507 + AT_rich Low_complexity Low_complexity 1 40 0 884 243 49 8 chr9 81796174 81796437 -36066190 + L1ME2 LINE L1 5694 5967 -197 708 105 0 0 chr9 81796797 81796902 -36065725 + AluY SINE Alu 205 309 -2 3300 195 13 20 chr9 81797267 81797742 -36064885 - L1MC1 LINE L1 -11 6602 6132 2063 101 3 10 chr9 81797742 81798038 -36064589 + AluSq SINE Alu 1 294 -19 3300 195 13 20 chr9 81798038 81798274 -36064353 - L1MC1 LINE L1 -481 6132 5896 231 260 0 0 chr9 81798276 81798326 -36064301 + LTR30 LTR ERV1 3 52 -670 2539 132 109 5 chr9 81798326 81798898 -36063729 + LTR12 LTR ERV1 57 2218 -220 2797 249 40 28 chr9 81798900 81800051 -36062576 - L1MC1 LINE L1 -715 5898 4610 6855 215 40 16 chr9 81800056 81801748 -36060879 - L1MC1 LINE L1 -3043 3383 1733 1862 147 3 0 chr9 81801748 81802033 -36060594 - AluSx SINE Alu -9 303 18 204 40 0 0 chr9 81802039 81802064 -36060563 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 6855 215 40 16 chr9 81802064 81803078 -36059549 - L1MC1 LINE L1 -4697 1729 353 261 0 0 0 chr9 81803078 81803107 -36059520 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 6855 215 40 16 chr9 81803107 81803449 -36059178 - L1MC1 LINE L1 -6073 353 21 301 243 65 56 chr9 81803992 81804099 -36058528 + MLT1D LTR MaLR 1 95 -410 1542 256 66 2 chr9 81804135 81804530 -36058097 + MLT1D LTR MaLR 82 501 -4 594 270 102 9 chr9 81804918 81805133 -36057494 - LTR33A LTR ERVL -2 521 287 288 0 0 0 chr9 81805431 81805463 -36057164 + (CA)n Simple_repeat Simple_repeat 2 33 0 22 35 0 0 chr9 81806481 81806510 -36056117 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr9 81808131 81808160 -36054467 + AT_rich Low_complexity Low_complexity 1 29 0 372 240 100 40 chr9 81808339 81808489 -36054138 + MER97a DNA MER1_type? 21 179 -715 5153 180 57 29 chr9 81808582 81810120 -36052507 - L1MA8 LINE L1 -5 6286 4696 4254 174 47 9 chr9 81810115 81810970 -36051657 - L1PB4 LINE L1 0 6156 5270 * 1069 169 9 31 chr9 81810974 81811199 -36051428 - L1MA8 LINE L1 -1437 4709 4490 830 160 115 0 chr9 81811202 81811358 -36051269 - FRAM SINE Alu -3 173 1 240 28 0 0 chr9 81811358 81811394 -36051233 - L1MA8 LINE L1 -1655 4491 4456 7959 170 11 24 chr9 81812272 81814117 -36048510 - L1MA2 LINE L1 0 6304 4507 1992 133 6 28 chr9 81814117 81814434 -36048193 - AluSx SINE Alu -1 311 2 7959 170 11 24 chr9 81814434 81815314 -36047313 - L1MA2 LINE L1 -1797 4507 3617 4132 186 41 5 chr9 81815433 81816230 -36046397 + LTR1B LTR ERV1 1 826 0 1589 226 42 21 chr9 81816648 81817073 -36045554 + MLT1C LTR MaLR 34 467 0 21 0 0 0 chr9 81817387 81817408 -36045219 + AT_rich Low_complexity Low_complexity 1 21 0 217 364 99 16 chr9 81817535 81817656 -36044971 + L2 LINE L2 3182 3312 -1 499 150 0 0 chr9 81818503 81818583 -36044044 - MADE1 DNA Mariner 0 80 1 766 155 0 8 chr9 81818707 81818836 -36043791 - AluSg/x SINE Alu -14 296 169 3585 227 124 42 chr9 81820407 81821805 -36040822 + L1MCa LINE L1 19 1532 -4894 1664 261 82 17 chr9 81821830 81822810 -36039817 + L1MCa LINE L1 2054 3097 -3329 180 111 0 0 chr9 81823512 81823539 -36039088 + (TGAA)n Simple_repeat Simple_repeat 3 29 0 676 202 59 31 chr9 81824269 81824468 -36038159 - L1MA8 LINE L1 -55 6257 6047 226 150 83 0 chr9 81824462 81824522 -36038105 + L1MA8 LINE L1 6221 6285 -6 * 812 141 15 0 chr9 81824626 81824761 -36037866 + L1MA3 LINE L1 6141 6277 -28 197 167 42 0 chr9 81824761 81824809 -36037818 + (CATATA)n Simple_repeat Simple_repeat 3 52 0 337 311 0 0 chr9 81824812 81824902 -36037725 + L1MC4 LINE L1 6614 6703 -1339 * 357 289 0 0 chr9 81824836 81824926 -36037701 - L1MC4 LINE L1 -1339 6703 6614 387 335 6 29 chr9 81825010 81825180 -36037447 - MIR3 SINE MIR -7 201 36 764 246 66 28 chr9 81825202 81825356 -36037271 - MER20 DNA MER1_type 0 219 53 1909 112 71 9 chr9 81825356 81825696 -36036931 + L1PA11 LINE L1 5812 6172 -2 764 246 66 28 chr9 81825696 81825752 -36036875 - MER20 DNA MER1_type -166 53 1 193 196 20 20 chr9 81825889 81825940 -36036687 - L3b LINE CR1 -196 1387 1337 32 67 0 0 chr9 81826298 81826358 -36036269 + AT_rich Low_complexity Low_complexity 1 60 0 27 49 0 0 chr9 81827055 81827096 -36035531 + AT_rich Low_complexity Low_complexity 1 41 0 228 206 111 63 chr9 81827110 81827236 -36035391 + L1MD3 LINE L1 6983 7114 -881 329 196 31 103 chr9 81827245 81827342 -36035285 + MLT1F1 LTR MaLR 45 134 -433 2273 195 43 22 chr9 81827342 81827849 -36034778 + L1MD3 LINE L1 7419 7936 -59 653 271 71 4 chr9 81827843 81828123 -36034504 - L1MEc LINE L1 -3446 2769 2471 * 7679 24 0 1 chr9 81828128 81829597 -36033030 - L1PA3 LINE L1 0 6155 4688 4204 22 0 0 chr9 81829597 81830098 -36032529 + L1PA3 LINE L1 4213 4713 -1433 275 125 0 47 chr9 81830101 81830165 -36032462 + (T)n Simple_repeat Simple_repeat 1 61 0 3791 5 2 0 chr9 81830276 81830703 -36031924 - L1PA2 LINE L1 -124 6031 5604 * 7763 29 0 0 chr9 81830701 81831635 -36030992 + L1P LINE L1 4438 5371 -775 457 202 9 0 chr9 81831645 81831754 -36030873 - L1MEc LINE L1 -3734 2481 2372 714 287 73 5 chr9 81831783 81832180 -36030447 - L1MEc LINE L1 -4125 2271 1848 1038 179 24 24 chr9 81832209 81832416 -36030211 - AluJo SINE Alu -59 253 47 364 291 66 0 chr9 81832431 81832582 -36030045 - L1MEc LINE L1 -4598 1798 1638 239 258 0 10 chr9 81833829 81833926 -36028701 + CT-rich Low_complexity Low_complexity 2 97 0 5151 95 36 0 chr9 81833949 81834652 -36027975 + MER11D LTR ERVK 170 897 0 367 291 160 34 chr9 81834911 81835117 -36027510 + MIR SINE MIR 30 261 -1 532 239 28 14 chr9 81835244 81835386 -36027241 - LTR40b LTR ERVL 0 462 319 749 368 116 29 chr9 81837096 81837813 -36024814 - L1M4 LINE L1 -869 5277 4499 275 278 114 18 chr9 81837844 81838071 -36024556 - L1MEc LINE L1 -3753 2653 2405 2367 35 0 3 chr9 81838081 81838370 -36024257 - L1PA4 LINE L1 -3 6152 5865 229 306 57 26 chr9 81838419 81838648 -36023979 - L1MEc LINE L1 -4164 2423 2188 270 272 61 9 chr9 81838813 81838927 -36023700 - L1MEc LINE L1 -5510 899 780 2852 86 6 8 chr9 81839063 81839284 -36023343 + L1PA7 LINE L1 5272 5492 -662 2099 101 0 19 chr9 81839284 81839591 -36023036 + AluY SINE Alu 4 304 -7 2852 86 6 8 chr9 81839591 81840149 -36022478 + L1PA7 LINE L1 5492 6152 -2 294 29 0 0 chr9 81841732 81841767 -36020860 + (TG)n Simple_repeat Simple_repeat 1 35 0 5432 28 0 2 chr9 81842802 81843442 -36019185 - L1PA3 LINE L1 -3 6152 5514 317 341 32 16 chr9 81843649 81843772 -36018855 - MIR SINE MIR -129 133 9 201 39 0 0 chr9 81844638 81844664 -36017963 + (TG)n Simple_repeat Simple_repeat 1 26 0 2683 72 16 112 chr9 81844664 81845110 -36017517 - MLT2A1 LTR ERVL -41 403 1 817 116 0 0 chr9 81845110 81845231 -36017396 - HERVL-A1-A1 LTR ERVL 0 5654 5534 37487 88 19 9 chr9 81845331 81850434 -36012193 - HERVL-A1-A1 LTR ERVL -502 5152 1 2882 101 45 7 chr9 81850434 81850474 -36012153 - MLT2A1 LTR ERVL 0 444 407 537 16 0 0 chr9 81850474 81850536 -36012091 + (TA)n Simple_repeat Simple_repeat 2 63 0 2882 101 45 7 chr9 81850536 81850921 -36011706 - MLT2A1 LTR ERVL -37 407 3 1266 128 31 3 chr9 81851270 81851504 -36011123 + L1PA11 LINE L1 5590 5830 -338 27353 141 18 72 chr9 81851522 81855036 -36007591 + L1P LINE L1 12 3107 -3039 261 0 0 0 chr9 81855036 81855065 -36007562 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 27353 141 18 72 chr9 81855065 81857172 -36005455 + L1P LINE L1 3107 5327 -819 648 108 0 0 chr9 81858590 81858683 -36003944 + L1PA11 LINE L1 6072 6164 -10 482 281 0 0 chr9 81858809 81858930 -36003697 + MER63A DNA MER1_type 90 210 0 364 266 120 32 chr9 81859385 81859543 -36003084 - L1MC4 LINE L1 -1339 6703 6532 438 212 179 0 chr9 81861486 81861637 -36000990 - MER53 DNA DNA -11 178 1 412 292 38 91 chr9 81861968 81862177 -36000450 + MIR SINE MIR 49 246 -16 1313 199 51 51 chr9 81862317 81862710 -35999917 + L1MC3 LINE L1 6538 6930 -855 692 203 0 30 chr9 81862718 81862851 -35999776 + FLAM_C SINE Alu 3 131 -12 2846 236 74 4 chr9 81862851 81863653 -35998974 + L1MC3 LINE L1 6928 7785 0 274 278 28 19 chr9 81864046 81864154 -35998473 - L1P4 LINE L1 -620 5546 5438 564 15 0 0 chr9 81864641 81864706 -35997921 + (TCTA)n Simple_repeat Simple_repeat 4 68 0 2073 95 15 4 chr9 81865268 81865542 -35997085 + AluSq SINE Alu 3 279 -34 189 0 0 0 chr9 81865548 81865569 -35997058 + (TAA)n Simple_repeat Simple_repeat 2 22 0 244 235 0 82 chr9 81866875 81866910 -35995717 + L1MC4 LINE L1 6614 6650 -1392 13227 161 19 16 chr9 81866910 81869319 -35993308 + Tigger1 DNA MER2_type 1 2418 0 207 0 0 0 chr9 81869321 81869344 -35993283 + (CA)n Simple_repeat Simple_repeat 2 24 0 244 235 0 82 chr9 81869344 81869403 -35993224 + L1MC4 LINE L1 6651 6703 -1339 435 63 0 63 chr9 81869404 81869499 -35993128 + (TA)n Simple_repeat Simple_repeat 1 89 0 1031 240 26 40 chr9 81869655 81869959 -35992668 + MLT1A1 LTR MaLR 1 300 -65 2169 115 3 20 chr9 81872137 81872493 -35990134 - L1PA13 LINE L1 0 6163 5814 886 50 16 0 chr9 81872493 81872605 -35990022 - L1PA8 LINE L1 -2 6170 6048 48 60 0 0 chr9 81872661 81872744 -35989883 + AT_rich Low_complexity Low_complexity 1 83 0 216 261 17 50 chr9 81872788 81872907 -35989720 + CT-rich Low_complexity Low_complexity 3 117 0 1311 239 67 0 chr9 81873073 81873387 -35989240 - L1PA15 LINE L1 -3 6162 5828 886 203 50 10 chr9 81873363 81873565 -35989062 + L1PA16 LINE L1 5664 5873 -293 * 1826 166 0 3 chr9 81874766 81875055 -35987572 + AluSx SINE Alu 1 288 -24 233 197 0 132 chr9 81875070 81875146 -35987481 + L1P5 LINE L1 5808 5873 -283 529 180 0 82 chr9 81875481 81875603 -35987024 + MLT1B LTR MaLR 2 113 -277 2772 98 39 5 chr9 81875785 81876174 -35986453 - MLT2A1 LTR ERVL -40 404 3 1140 238 32 7 chr9 81876177 81876454 -35986173 + MLT1B LTR MaLR 107 390 0 3045 206 80 1 chr9 81876757 81877408 -35985219 - MER44D DNA MER2_type 0 705 4 421 242 163 33 chr9 81878858 81879011 -35983616 - MER5B DNA MER1_type -3 175 3 333 150 17 17 chr9 81879270 81879330 -35983297 + Charlie5 DNA MER1_type 5 64 -2548 310 146 18 18 chr9 81879410 81879465 -35983162 + Alu SINE Alu 248 302 -6 375 314 73 11 chr9 81879603 81879794 -35982833 - L2 LINE L2 -25 3288 3086 189 244 81 23 chr9 81880179 81880265 -35982362 - MIR3 SINE MIR -36 172 82 221 259 68 61 chr9 81880984 81881131 -35981496 - L2 LINE L2 -1216 2098 1951 194 289 12 48 chr9 81882614 81882697 -35979930 + L2 LINE L2 3178 3257 -15 812 53 0 0 chr9 81882706 81882800 -35979827 + AluSg/x SINE Alu 195 288 -24 423 0 0 0 chr9 81882811 81882858 -35979769 + (TAAAA)n Simple_repeat Simple_repeat 3 49 0 2773 59 20 2 chr9 81883106 81883644 -35978983 - L1P2 LINE L1 -535 5619 5071 3667 45 0 0 chr9 81883644 81884085 -35978542 + L1PA5 LINE L1 5707 6154 0 306 262 178 0 chr9 81884316 81884423 -35978204 - L2 LINE L2 -595 2719 2594 217 288 0 0 chr9 81884781 81884840 -35977787 + MIR SINE MIR 173 231 -31 264 328 0 72 chr9 81885592 81885717 -35976910 - L2 LINE L2 0 3272 3157 467 226 179 12 chr9 81885727 81885895 -35976732 - MER5C DNA MER1_type -1 323 128 3527 114 13 2 chr9 81885999 81886535 -35976092 + L1PA14 LINE L1 5618 6159 -2 24 0 0 0 chr9 81886704 81886728 -35975899 + AT_rich Low_complexity Low_complexity 1 24 0 26 50 0 0 chr9 81888028 81888068 -35974559 + AT_rich Low_complexity Low_complexity 1 40 0 998 158 6 0 chr9 81888071 81888236 -35974391 - AluSx SINE Alu -22 290 125 6652 74 21 2 chr9 81888246 81889423 -35973204 - L1PA7 LINE L1 -13 6141 4962 2010 75 0 0 chr9 81889423 81889689 -35972938 + L1PA7 LINE L1 4702 4967 -1179 1046 110 0 0 chr9 81889689 81889825 -35972802 - AluSx SINE Alu -176 136 1 533 248 0 8 chr9 81890071 81890192 -35972435 - MER5C DNA MER1_type -204 120 1 246 160 0 0 chr9 81891099 81891149 -35971478 + (TA)n Simple_repeat Simple_repeat 1 50 0 362 176 0 22 chr9 81891959 81892050 -35970577 + (TATG)n Simple_repeat Simple_repeat 2 90 0 1414 306 37 16 chr9 81892098 81892607 -35970020 + L2 LINE L2 2006 2525 -789 744 290 34 58 chr9 81893596 81894103 -35968524 + L2 LINE L2 2749 3239 -74 414 350 21 0 chr9 81894375 81894518 -35968109 - HERV16 LTR ERVL -3174 1822 1677 2235 341 55 36 chr9 81894610 81895924 -35966703 - HERV16 LTR ERVL -3465 1531 193 836 336 60 39 chr9 81896108 81896542 -35966085 - LTR16A LTR ERVL 0 450 8 192 152 0 0 chr9 81897008 81897041 -35965586 + (TA)n Simple_repeat Simple_repeat 2 34 0 878 229 13 25 chr9 81897732 81897957 -35964670 - L1M LINE L1 -830 5316 5101 244 289 21 99 chr9 81898630 81898772 -35963855 + MIR3 SINE MIR 59 189 -19 327 290 24 16 chr9 81899493 81899617 -35963010 - MIR3 SINE MIR 0 208 84 23 78 0 0 chr9 81900372 81900423 -35962204 + AT_rich Low_complexity Low_complexity 1 51 0 27 29 0 0 chr9 81900791 81900825 -35961802 + AT_rich Low_complexity Low_complexity 1 34 0 23 0 0 0 chr9 81901431 81901454 -35961173 + AT_rich Low_complexity Low_complexity 1 23 0 250 288 76 8 chr9 81901850 81901982 -35960645 - MER20B DNA MER1_type -453 330 190 618 270 86 83 chr9 81902083 81902445 -35960182 - MLT1H LTR MaLR -19 530 165 1645 157 76 31 chr9 81902445 81902801 -35959826 - THE1C LTR MaLR -3 372 1 618 270 86 83 chr9 81902801 81902834 -35959793 - MLT1H LTR MaLR -384 165 134 259 273 254 6 chr9 81902953 81903283 -35959344 - L1M4 LINE L1 -1886 4260 3849 2505 237 68 5 chr9 81903310 81903879 -35958748 + MER77 LTR ERV1 1 605 0 603 304 103 29 chr9 81903880 81904879 -35957748 - L1M4 LINE L1 -2352 3794 2722 418 361 24 0 chr9 81906740 81906909 -35955718 + L2 LINE L2 2627 2799 -515 300 119 0 119 chr9 81908452 81908519 -35954108 - L1MC4 LINE L1 -1340 6702 6644 425 298 5 52 chr9 81911008 81911199 -35951428 - MER20B DNA MER1_type 0 219 38 1894 131 4 0 chr9 81911851 81912119 -35950508 - AluSx SINE Alu -43 269 1 221 387 0 0 chr9 81913399 81913474 -35949153 + L3 LINE CR1 1502 1576 -1 390 21 0 0 chr9 81914013 81914060 -35948567 + (CA)n Simple_repeat Simple_repeat 2 48 0 3296 179 51 90 chr9 81914308 81914644 -35947983 - L1MB3 LINE L1 -62 6121 5774 324 70 0 0 chr9 81914644 81914687 -35947940 + (TG)n Simple_repeat Simple_repeat 2 44 0 3296 179 51 90 chr9 81914687 81915586 -35947041 - L1MB3 LINE L1 -409 5774 4903 1259 220 36 27 chr9 81915743 81916075 -35946552 + L1MA7 LINE L1 5782 6116 -175 * 2136 230 68 23 chr9 81916045 81916896 -35945731 - L1MB3 LINE L1 -1291 4855 3791 4055 163 25 14 chr9 81916929 81917770 -35944857 - L1MA4 LINE L1 -9 6291 5442 3228 200 88 32 chr9 81917944 81918650 -35943977 + L1MD1 LINE L1 5179 5957 -285 1475 171 20 36 chr9 81918650 81918955 -35943672 + AluJo SINE Alu 1 300 -12 3228 200 88 32 chr9 81918955 81919258 -35943369 + L1MD1 LINE L1 5957 6241 -1 280 2 27 2 chr9 81919395 81919475 -35943152 + L1PA3 LINE L1 6104 6183 0 842 156 144 6 chr9 81919771 81919944 -35942683 - MSTA LTR MaLR -231 197 1 9558 200 32 26 chr9 81919944 81923374 -35939253 + L1M2 LINE L1 2338 5776 -524 1132 189 42 13 chr9 81923370 81923608 -35939019 + L1MA6 LINE L1 5594 5838 -462 * 511 314 75 23 chr9 81923609 81923927 -35938700 - MLT1F1 LTR MaLR -227 366 27 55 56 0 0 chr9 81924579 81924669 -35937958 + AT_rich Low_complexity Low_complexity 1 90 0 186 167 0 0 chr9 81925395 81925431 -35937196 + (TA)n Simple_repeat Simple_repeat 2 37 0 454 218 21 70 chr9 81925431 81925573 -35937054 - L1MB5 LINE L1 -9 6165 6031 263 257 14 0 chr9 81926098 81926168 -35936459 + (CATA)n Simple_repeat Simple_repeat 1 71 0 3426 235 38 22 chr9 81926182 81926849 -35935778 - L1MB5 LINE L1 -9 6165 5458 1923 150 0 0 chr9 81926849 81927143 -35935484 - AluSx SINE Alu -14 298 5 3426 235 38 22 chr9 81927143 81927721 -35934906 - L1MB5 LINE L1 -716 5458 4891 329 107 0 0 chr9 81927723 81927779 -35934848 - L1PB4 LINE L1 0 6156 6101 630 133 24 84 chr9 81927854 81928020 -35934607 - L1MA8 LINE L1 -1 6290 6135 1900 166 11 3 chr9 81928022 81928371 -35934256 - L1MA8 LINE L1 -622 5690 5339 1231 289 62 35 chr9 81929218 81929765 -35932862 - MLT1E2 LTR MaLR 0 626 65 394 335 21 5 chr9 81929933 81930124 -35932503 - L1ME LINE L1 -577 5585 5392 291 140 0 0 chr9 81931499 81931549 -35931078 + (A)n Simple_repeat Simple_repeat 1 50 0 435 19 0 0 chr9 81931944 81931996 -35930631 + (CA)n Simple_repeat Simple_repeat 2 53 0 24 0 0 0 chr9 81932367 81932391 -35930236 + AT_rich Low_complexity Low_complexity 1 24 0 4817 96 18 3 chr9 81932751 81933429 -35929198 + LTR12 LTR ERV1 1 688 0 8183 65 8 9 chr9 81933692 81934765 -35927862 + MER11C LTR ERVK 1 1071 0 369 225 119 38 chr9 81935279 81935439 -35927188 - MLT1C LTR MaLR -183 284 112 2186 211 26 19 chr9 81935531 81936067 -35926560 - MER34 LTR ERV1 0 542 3 21 36 0 0 chr9 81936956 81936984 -35925643 + AT_rich Low_complexity Low_complexity 1 28 0 997 218 105 91 chr9 81937774 81938155 -35924472 + MLT2D LTR ERVL 1 390 -24 318 67 0 0 chr9 81938155 81938200 -35924427 + (CA)n Simple_repeat Simple_repeat 1 45 0 997 218 105 91 chr9 81938200 81938226 -35924401 + MLT2D LTR ERVL 390 414 0 577 341 39 16 chr9 81938374 81938506 -35924121 - MIR SINE MIR 0 262 135 1624 118 0 9 chr9 81938506 81938734 -35923893 + AluSg/x SINE Alu 68 293 -17 577 341 39 16 chr9 81938734 81938856 -35923771 - MIR SINE MIR -127 135 2 10350 146 20 67 chr9 81940894 81943413 -35919214 + L1P3 LINE L1 5 2503 -3958 10414 113 3 3 chr9 81943415 81944967 -35917660 - L1PA7 LINE L1 -796 5350 3800 5838 81 0 1 chr9 81944967 81945736 -35916891 + L1PA7 LINE L1 5377 6151 -3 13749 123 22 3 chr9 81945737 81947899 -35914728 + L1P3 LINE L1 2487 4688 -1773 3665 234 55 16 chr9 81948034 81950051 -35912576 + L1MB5 LINE L1 3985 6073 -101 303 348 47 26 chr9 81950086 81950319 -35912308 + L1M4 LINE L1 4794 5031 -1115 27 62 0 0 chr9 81950428 81950476 -35912151 + AT_rich Low_complexity Low_complexity 1 48 0 671 225 7 7 chr9 81950562 81950704 -35911923 + AluJo SINE Alu 1 142 -170 321 180 0 0 chr9 81950704 81950754 -35911873 + AluS SINE Alu 233 282 -18 216 0 0 0 chr9 81950762 81950786 -35911841 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 227 285 47 93 chr9 81950886 81951079 -35911548 - L2 LINE L2 -69 3244 3061 947 234 5 0 chr9 81951198 81951399 -35911228 + MER105 DNA DNA 1 202 -2 31 82 0 0 chr9 81951908 81951981 -35910646 + AT_rich Low_complexity Low_complexity 1 73 0 21 36 0 0 chr9 81952500 81952528 -35910099 + AT_rich Low_complexity Low_complexity 1 28 0 6504 111 6 2 chr9 81952548 81952686 -35909941 - L1PA8 LINE L1 -2 6170 6034 2051 98 0 0 chr9 81952686 81952961 -35909666 - AluY SINE Alu -7 304 30 6504 111 6 2 chr9 81952961 81954627 -35908000 - L1PA8 LINE L1 -138 6034 4397 333 291 67 59 chr9 81954898 81955269 -35907358 + L1MC5 LINE L1 7013 7386 -575 350 286 31 73 chr9 81955320 81955704 -35906923 + L1MC5 LINE L1 7411 7778 -183 790 185 21 42 chr9 81955886 81955947 -35906680 - MER3 DNA MER1_type -8 201 140 6565 87 3 2 chr9 81955947 81957429 -35905198 + L1PA7 LINE L1 4656 6154 0 790 185 21 42 chr9 81957429 81957556 -35905071 - MER3 DNA MER1_type -69 140 17 181 254 15 30 chr9 81957956 81958023 -35904604 + MIR SINE MIR 185 250 -12 319 180 0 0 chr9 81959976 81960075 -35902552 - AluJ/FRAM SINE Alu 0 330 232 221 175 0 0 chr9 81960128 81960168 -35902459 + T-rich Low_complexity Low_complexity 1 40 0 28 29 0 0 chr9 81960521 81960556 -35902071 + AT_rich Low_complexity Low_complexity 1 35 0 716 257 89 146 chr9 81960713 81960798 -35901829 - L1MDa LINE L1 -4009 2531 2443 8125 70 6 8 chr9 81960798 81961872 -35900755 + MER11C LTR ERVK 1 1071 0 716 257 89 146 chr9 81961872 81962237 -35900390 - L1MDa LINE L1 -4097 2443 2107 24 67 0 0 chr9 81962445 81962490 -35900137 + AT_rich Low_complexity Low_complexity 1 45 0 671 178 20 7 chr9 81963209 81963361 -35899266 - L1MA9 LINE L1 0 6312 6159 294 376 107 35 chr9 81964244 81964794 -35897833 - L2 LINE L2 -1 3312 2697 1200 194 4 0 chr9 81964799 81965031 -35897596 - L1MA6 LINE L1 0 6300 6068 1172 307 89 14 chr9 81965038 81965530 -35897097 - L2 LINE L2 -620 2694 2166 491 245 69 37 chr9 81965655 81965843 -35896784 + MER31B LTR ERV1 273 466 0 294 282 0 0 chr9 81965887 81965958 -35896669 + MER31B-int LTR ERV1 10 80 -4856 838 267 81 23 chr9 81965961 81966306 -35896321 + MLT1A1 LTR MaLR 1 365 0 1249 248 38 45 chr9 81966478 81966898 -35895729 + MER31B-int LTR ERV1 314 730 -4206 30 59 0 0 chr9 81966933 81966984 -35895643 + AT_rich Low_complexity Low_complexity 1 51 0 975 220 72 62 chr9 81967027 81967445 -35895182 + MER31B-int LTR ERV1 1701 2122 -2814 428 298 21 107 chr9 81967645 81967887 -35894740 + LTR16C LTR ERVL 59 279 -212 287 313 12 0 chr9 81967932 81968015 -35894612 + L2 LINE L2 3213 3296 -17 591 317 116 52 chr9 81969109 81969341 -35893286 + L2 LINE L2 2507 2723 -590 1010 101 25 0 chr9 81969341 81969500 -35893127 + L1MA4A LINE L1 6135 6297 -6 591 317 116 52 chr9 81969500 81970020 -35892607 + L2 LINE L2 2723 3313 0 21 57 0 0 chr9 81970370 81970405 -35892222 + AT_rich Low_complexity Low_complexity 1 35 0 276 0 0 0 chr9 81970728 81970764 -35891863 + L1PA3 LINE L1 6115 6150 -5 1247 262 53 82 chr9 81970767 81971290 -35891337 - LTR40a LTR ERVL -4 515 8 34 24 0 0 chr9 81971680 81971721 -35890906 + AT_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chr9 81971908 81971930 -35890697 + AT_rich Low_complexity Low_complexity 1 22 0 1539 291 43 7 chr9 81972105 81972528 -35890099 - MLT1F LTR MaLR -96 446 9 250 304 65 96 chr9 81972541 81972896 -35889731 - MLT1F-int LTR MaLR -5 1366 1023 303 273 112 37 chr9 81973413 81973574 -35889053 - MLT1F-int LTR MaLR -760 611 439 3730 138 52 6 chr9 81973694 81974351 -35888276 - L1PA16 LINE L1 0 6166 5480 252 266 28 63 chr9 81974413 81974556 -35888071 - MLT1F-int LTR MaLR -1227 144 7 1571 261 47 23 chr9 81974563 81975091 -35887536 - MLT1F LTR MaLR -1 541 1 1932 95 46 21 chr9 81975454 81975739 -35886888 + AluSc SINE Alu 1 292 -17 453 90 0 0 chr9 81975751 81975818 -35886809 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 454 309 86 6 chr9 81975826 81976001 -35886626 + MIR SINE MIR 74 262 0 259 292 0 0 chr9 81976275 81976364 -35886263 + (TA)n Simple_repeat Simple_repeat 1 89 0 2422 185 2 32 chr9 81976460 81976953 -35885674 + L1MA9 LINE L1 5303 5780 -532 232 133 33 0 chr9 81976979 81977039 -35885588 + (CA)n Simple_repeat Simple_repeat 1 62 0 2247 169 58 37 chr9 81977056 81977571 -35885056 + L1MA9 LINE L1 5787 6312 0 455 222 71 16 chr9 81978168 81978294 -35884333 + MER5A DNA MER1_type 1 133 -56 261 0 0 0 chr9 81978294 81978323 -35884304 + (TTA)n Simple_repeat Simple_repeat 2 30 0 793 226 6 44 chr9 81978335 81978516 -35884111 - AluJo SINE Alu -46 266 93 873 146 6 32 chr9 81978916 81979074 -35883553 + L1MA1 LINE L1 6119 6272 -30 26 0 0 0 chr9 81979256 81979282 -35883345 + AT_rich Low_complexity Low_complexity 1 26 0 2499 234 29 8 chr9 81979323 81979985 -35882642 - L1 LINE L1 -836 5310 4635 904 209 0 11 chr9 81980124 81980301 -35882326 + FAM SINE Alu 1 175 0 2207 117 10 0 chr9 81980670 81980978 -35881649 - AluY SINE Alu 0 311 1 28 0 0 0 chr9 81981118 81981146 -35881481 + AT_rich Low_complexity Low_complexity 1 28 0 195 42 0 0 chr9 81981237 81981261 -35881366 + (TA)n Simple_repeat Simple_repeat 2 25 0 398 308 8 0 chr9 81981271 81981404 -35881223 - MIR SINE MIR 0 262 129 401 284 64 61 chr9 81982351 81982678 -35879949 - L1M4 LINE L1 -587 5591 5260 387 248 64 57 chr9 81982718 81982921 -35879706 - MLT1F1 LTR MaLR -356 186 1 23 33 0 0 chr9 81983422 81983452 -35879175 + AT_rich Low_complexity Low_complexity 1 30 0 263 240 25 8 chr9 81983995 81984116 -35878511 + (TA)n Simple_repeat Simple_repeat 2 124 0 2799 110 30 2 chr9 81984207 81984542 -35878085 - L1PA13 LINE L1 -1 6162 5811 236 30 30 0 chr9 81984542 81984575 -35878052 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 2799 110 30 2 chr9 81984575 81984668 -35877959 - L1PA13 LINE L1 -352 5811 5722 695 130 46 0 chr9 81986070 81986201 -35876426 - L1MA7 LINE L1 0 6291 6155 1171 184 29 17 chr9 81986202 81986681 -35875946 - L1MA7 LINE L1 -244 6047 5395 1224 193 75 19 chr9 81986766 81987139 -35875488 - L1MA7 LINE L1 -745 5401 5008 1012 188 0 0 chr9 81987140 81987310 -35875317 - AluJb SINE Alu -9 303 134 1477 226 3 3 chr9 81987310 81987602 -35875025 - AluJb SINE Alu -16 296 5 1049 231 68 12 chr9 81987609 81987930 -35874697 - L1MA7 LINE L1 -1135 5011 4673 883 168 41 5 chr9 81987900 81988097 -35874530 - L1MA7 LINE L1 -2552 3594 3391 * 7073 198 79 26 chr9 81988097 81989573 -35873054 - MER52A LTR ERV1 0 1755 203 307 229 145 0 chr9 81989573 81989656 -35872971 - MER52A LTR ERV1 -1660 95 1 388 215 44 22 chr9 81989657 81989792 -35872835 - L1MA7 LINE L1 -2753 3393 3256 1305 231 111 5 chr9 81989939 81990346 -35872281 - L1 LINE L1 -893 6672 6223 3229 258 90 3 chr9 81990359 81991256 -35871371 - L1 LINE L1 -6579 986 12 382 165 38 0 chr9 81991257 81991336 -35871291 - L1 LINE L1 -2378 3768 3687 180 396 28 9 chr9 81991754 81991860 -35870767 + MIR SINE MIR 26 133 -129 388 289 135 53 chr9 81991998 81992316 -35870311 + MLT1J LTR MaLR 7 350 -161 380 276 32 8 chr9 81992453 81992576 -35870051 + MIR SINE MIR 91 216 -46 692 250 26 61 chr9 81992577 81992805 -35869822 + MER58A DNA MER1_type 2 221 -3 937 186 0 0 chr9 81992994 81993173 -35869454 + AluSg/x SINE Alu 129 307 0 2456 71 0 3 chr9 81993265 81993574 -35869053 + AluY SINE Alu 1 308 -3 23 33 0 0 chr9 81993634 81993664 -35868963 + AT_rich Low_complexity Low_complexity 1 30 0 322 281 94 28 chr9 81993709 81994101 -35868526 - L1M4 LINE L1 -3519 2627 2210 1077 246 16 53 chr9 81994234 81994665 -35867962 + L1P5 LINE L1 5361 5775 -376 4773 39 2 3 chr9 81994843 81995706 -35866921 - L1PA4 LINE L1 -311 5844 4982 581 276 75 71 chr9 81996113 81996293 -35866334 + ERVL LTR ERVL 2351 2529 -3235 6869 108 26 16 chr9 81996293 81997353 -35865274 + MER11C LTR ERVK 1 1071 0 581 276 75 71 chr9 81997353 81997388 -35865239 + ERVL LTR ERVL 2529 2562 -3202 1616 156 189 16 chr9 81997388 81997753 -35864874 + MSTA LTR MaLR 1 428 0 8838 158 36 12 chr9 81997755 81999295 -35863332 + MSTA-int LTR MaLR 3 1580 0 1303 186 168 52 chr9 81999295 81999677 -35862950 + MSTB LTR MaLR 1 426 0 581 276 75 71 chr9 81999677 81999750 -35862877 + ERVL LTR ERVL 2561 2645 -3119 297 375 80 8 chr9 82000564 82000940 -35861687 + ERVL LTR ERVL 3677 4079 -1575 443 319 62 66 chr9 82000941 82001424 -35861203 - MLT1J LTR MaLR -3 508 28 298 329 97 26 chr9 82001639 82001867 -35860760 + ERVL LTR ERVL 4720 4963 -801 644 122 131 0 chr9 82002695 82002802 -35859825 - THE1B LTR MaLR -49 315 195 347 184 0 2 chr9 82002848 82002916 -35859711 + FLAM SINE Alu 52 111 -22 1876 122 32 29 chr9 82002962 82003236 -35859391 + AluSx SINE Alu 1 278 -34 210 37 0 0 chr9 82003236 82003263 -35859364 + (CAA)n Simple_repeat Simple_repeat 1 27 0 1876 122 32 29 chr9 82003263 82003299 -35859328 + AluSx SINE Alu 278 312 0 26 0 0 0 chr9 82003299 82003325 -35859302 + AT_rich Low_complexity Low_complexity 1 26 0 1554 123 98 0 chr9 82003325 82003560 -35859067 + AluSc SINE Alu 2 259 -50 1884 238 54 8 chr9 82004545 82005028 -35857599 + MLT1D LTR MaLR 1 505 0 2312 76 0 19 chr9 82005451 82005765 -35856862 + AluY SINE Alu 1 308 -3 664 187 29 0 chr9 82006846 82006985 -35855642 - Charlie1 DNA MER1_type 0 2761 2619 587 343 32 5 chr9 82006980 82007199 -35855428 - Charlie1 DNA MER1_type -2536 225 1 * 227 295 64 0 chr9 82007333 82007420 -35855207 - MIR SINE MIR -61 147 71 222 316 26 13 chr9 82008803 82008879 -35853748 - L2 LINE L2 -4 3309 3233 260 322 78 0 chr9 82009645 82009735 -35852892 + L2 LINE L2 3176 3272 0 1501 143 65 93 chr9 82009741 82010127 -35852500 + THE1C LTR MaLR 1 375 0 1676 185 44 3 chr9 82010761 82011058 -35851569 - AluSx SINE Alu -3 309 1 1985 239 110 66 chr9 82011953 82012729 -35849898 - L1MC4a LINE L1 -10 7798 6975 204 40 0 0 chr9 82012729 82012754 -35849873 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 1985 239 110 66 chr9 82012754 82012888 -35849739 - L1MC4a LINE L1 -833 6975 6848 1794 208 15 54 chr9 82012922 82013384 -35849243 - MER41B LTR ERV1 -36 599 156 3274 266 114 22 chr9 82013504 82015085 -35847542 - L1MC4 LINE L1 -743 5403 5191 359 113 16 0 chr9 82015088 82015150 -35847477 - L1MA9 LINE L1 0 6312 6250 2253 192 39 72 chr9 82015173 82015767 -35846860 - LTR38B LTR ERV1 -36 574 1 996 156 0 21 chr9 82015767 82015953 -35846674 - L1MA9 LINE L1 -59 6253 6072 3448 130 27 17 chr9 82015953 82016475 -35846152 - MER1A DNA MER1_type 0 529 3 641 131 33 8 chr9 82016484 82016606 -35846021 - L1MA4 LINE L1 -217 6083 5959 11547 110 43 11 chr9 82016606 82017552 -35845075 + MER57-int LTR ERV1 2182 3096 -4441 2137 96 46 0 chr9 82017552 82017834 -35844793 + AluY SINE Alu 1 295 -16 11547 110 43 11 chr9 82017834 82018738 -35843889 + MER57-int LTR ERV1 3096 6463 -1074 2060 98 3 0 chr9 82018742 82019137 -35843490 - L1PB1 LINE L1 -4 6147 5683 1474 155 11 40 chr9 82019137 82019227 -35843400 + MER4D LTR ERV1 626 717 -186 2144 138 32 48 chr9 82019227 82019627 -35843000 + MER48 LTR ERV1 5 398 0 1474 155 11 40 chr9 82019627 82019814 -35842813 + MER4D LTR ERV1 717 895 -8 4342 123 315 79 chr9 82020472 82021845 -35840782 - pTR5 LTR ERV1 0 2438 743 206 156 0 22 chr9 82021936 82021981 -35840646 + T-rich Low_complexity Low_complexity 5 48 0 230 282 0 0 chr9 82022277 82022348 -35840279 - L1MEc LINE L1 -4734 1662 1592 2398 154 10 0 chr9 82022739 82023129 -35839498 - MER57A LTR ERV1 -7 396 3 309 330 106 5 chr9 82023151 82023298 -35839329 + MIR SINE MIR 44 214 -48 1587 170 119 82 chr9 82023298 82023785 -35838842 - MLT1D LTR MaLR 0 505 1 309 330 106 5 chr9 82023785 82023829 -35838798 + MIR SINE MIR 214 252 -10 224 233 0 0 chr9 82024159 82024202 -35838425 + (CATA)n Simple_repeat Simple_repeat 3 45 0 2448 141 143 37 chr9 82024470 82024982 -35837645 + LTR18B LTR ERVL 1 566 -48 251 194 32 0 chr9 82025226 82025288 -35837339 - MER116 DNA Mariner -5 75 12 2272 102 3 0 chr9 82025288 82025592 -35837035 - AluSp SINE Alu -8 305 1 27 0 0 0 chr9 82025792 82025819 -35836808 + AT_rich Low_complexity Low_complexity 1 27 0 246 247 0 0 chr9 82025857 82025934 -35836693 + (TATATG)n Simple_repeat Simple_repeat 2 78 0 379 292 26 44 chr9 82026102 82026328 -35836299 + L1ME4a LINE L1 5704 5925 -196 24 32 0 0 chr9 82026444 82026475 -35836152 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr9 82028033 82028062 -35834565 + AT_rich Low_complexity Low_complexity 1 29 0 439 319 68 25 chr9 82028566 82028801 -35833826 + MLT1J1 LTR MaLR 69 313 -133 1243 107 44 10 chr9 82029121 82029327 -35833300 + L1PA13 LINE L1 5949 6161 -2 323 176 0 44 chr9 82030263 82030331 -35832296 + L3 LINE CR1 1334 1398 -179 5998 163 50 7 chr9 82030740 82031600 -35831027 + Tigger1 DNA MER2_type 55 974 -1444 1591 202 6 6 chr9 82031600 82031912 -35830715 - AluJo SINE Alu 0 312 1 5998 163 50 7 chr9 82031912 82032159 -35830468 + Tigger1 DNA MER2_type 974 1209 -1209 4483 153 36 29 chr9 82032158 82032379 -35830248 + Tigger1 DNA MER2_type 1583 1801 -617 * 2389 109 0 0 chr9 82032379 82032692 -35829935 - AluSq SINE Alu 0 313 1 4483 153 36 29 chr9 82032692 82033300 -35829327 + Tigger1 DNA MER2_type 1801 2418 0 24 53 0 0 chr9 82034042 82034080 -35828547 + AT_rich Low_complexity Low_complexity 1 38 0 426 203 0 0 chr9 82034498 82034631 -35827996 + (TA)n Simple_repeat Simple_repeat 2 134 0 332 261 0 22 chr9 82034638 82034730 -35827897 - L1MC4 LINE L1 -1339 6703 6614 * 365 289 0 0 chr9 82034664 82034754 -35827873 + L1MC4 LINE L1 6614 6703 -1339 200 270 150 50 chr9 82034881 82034981 -35827646 + MIR SINE MIR 11 120 -142 216 0 0 0 chr9 82035217 82035241 -35827386 + (TA)n Simple_repeat Simple_repeat 1 24 0 25 0 0 0 chr9 82035312 82035337 -35827290 + AT_rich Low_complexity Low_complexity 1 25 0 303 330 25 8 chr9 82035562 82035680 -35826947 + MLT1J2 LTR MaLR 16 135 -315 265 303 13 0 chr9 82036548 82036624 -35826003 - MER20 DNA MER1_type -121 98 22 243 0 0 0 chr9 82036841 82036868 -35825759 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 46 54 0 0 chr9 82037198 82037272 -35825355 + AT_rich Low_complexity Low_complexity 1 74 0 368 291 13 13 chr9 82037279 82037437 -35825190 - L1M4 LINE L1 -3156 2990 2833 742 195 104 37 chr9 82037447 82037688 -35824939 + MLT1E1 LTR MaLR 1 257 -397 253 250 133 78 chr9 82037576 82037704 -35824923 + MLT2C1 LTR ERVL 81 215 -182 * 4159 225 18 2 chr9 82037747 82038538 -35824089 + L1M1 LINE L1 126 928 -6637 9021 210 50 56 chr9 82038552 82041128 -35821499 + L1M1 LINE L1 677 3237 -4328 2501 144 5 2 chr9 82041129 82041532 -35821095 + L1M1 LINE L1 5321 5724 -581 361 225 50 0 chr9 82041514 82041594 -35821033 + L1M1 LINE L1 1314 1397 -6168 * 2502 156 12 20 chr9 82041582 82042070 -35820557 + L1MA3 LINE L1 5725 6208 -97 294 95 0 0 chr9 82042467 82042509 -35820118 + (TA)n Simple_repeat Simple_repeat 2 43 0 551 280 85 4 chr9 82042517 82042788 -35819839 + L1M1 LINE L1 3727 4019 -3546 738 165 28 44 chr9 82042793 82042975 -35819652 + MER67C LTR ERV1 5 183 -527 1205 193 104 19 chr9 82043042 82043354 -35819273 + MER67C LTR ERV1 135 517 -193 644 229 56 13 chr9 82043368 82043713 -35818914 + L1MC3 LINE L1 5555 7785 0 1556 201 7 32 chr9 82043748 82044057 -35818570 + MER61B LTR ERV1 125 425 0 3683 165 32 63 chr9 82044058 82044847 -35817780 + MER61B-int LTR ERV1 2 765 -4452 1067 81 13 0 chr9 82044843 82044992 -35817635 + MER61B-int LTR ERV1 1107 1257 -3960 * 24182 109 33 22 chr9 82044993 82046767 -35815860 + MER61B-int LTR ERV1 1359 3113 -2104 2496 77 0 0 chr9 82046767 82047067 -35815560 - AluY SINE Alu -9 302 3 24182 109 33 22 chr9 82047067 82049110 -35813517 + MER61B-int LTR ERV1 3113 5217 0 1665 158 7 32 chr9 82049131 82049441 -35813186 + MER61B LTR ERV1 124 425 0 611 276 52 54 chr9 82049441 82049841 -35812786 + L1ME1 LINE L1 5781 6312 0 1956 225 33 25 chr9 82050427 82050979 -35811648 - LTR38 LTR ERV1 0 556 1 187 239 43 0 chr9 82051349 82051395 -35811232 - L2 LINE L2 0 3313 3266 21 0 0 0 chr9 82051551 82051572 -35811055 + AT_rich Low_complexity Low_complexity 1 21 0 3128 171 55 33 chr9 82052256 82052369 -35810258 + MER67C LTR ERV1 1 110 -600 2302 83 0 3 chr9 82052369 82052690 -35809937 + AluY SINE Alu 1 311 0 3128 171 55 33 chr9 82052690 82053271 -35809356 + MER67C LTR ERV1 110 710 0 293 167 28 0 chr9 82053305 82053377 -35809250 + (TATATG)n Simple_repeat Simple_repeat 6 79 0 4254 173 6 74 chr9 82053597 82054535 -35808092 - L1MCa LINE L1 -5283 1143 269 380 259 45 38 chr9 82054539 82054710 -35807917 - L1MA10 LINE L1 -4 6330 5997 240 333 14 0 chr9 82054715 82054787 -35807840 + L2 LINE L2 3241 3313 0 21 36 0 0 chr9 82055371 82055399 -35807228 + AT_rich Low_complexity Low_complexity 1 28 0 186 224 82 0 chr9 82055669 82055718 -35806909 + L2 LINE L2 3261 3313 0 4091 122 17 0 chr9 82055910 82056510 -35806117 - HSMAR1 DNA Mariner -677 610 1 1920 139 72 17 chr9 82056564 82056910 -35805717 + THE1C LTR MaLR 9 373 -2 755 194 41 12 chr9 82056912 82057082 -35805545 - L1MD1 LINE L1 -42 6200 6026 1410 294 50 13 chr9 82057113 82057898 -35804729 - L1MDa LINE L1 -2493 4047 3234 5932 152 26 21 chr9 82057908 82059004 -35803623 - Tigger3b DNA MER2_type -125 1106 5 408 212 53 53 chr9 82059006 82059138 -35803489 - L1MDa LINE L1 -4211 2329 2198 22 0 0 0 chr9 82059140 82059162 -35803465 + AT_rich Low_complexity Low_complexity 1 22 0 840 176 113 0 chr9 82059168 82059372 -35803255 - L1MDa LINE L1 -4701 1839 1613 1011 231 42 3 chr9 82059382 82059690 -35802937 - L1MDa LINE L1 -5039 1501 1182 1380 223 105 6 chr9 82059690 82060022 -35802605 + MLT1A1 LTR MaLR 1 365 0 3529 266 107 9 chr9 82060022 82061102 -35801525 - L1MDa LINE L1 -5354 1186 1 2133 105 0 25 chr9 82061595 82061910 -35800717 - AluY SINE Alu -4 307 1 341 354 33 0 chr9 82062594 82062775 -35799852 - MIR SINE MIR -2 260 74 282 317 67 0 chr9 82063678 82063782 -35798845 - MER5A DNA MER1_type -78 111 1 2073 145 0 0 chr9 82064379 82064682 -35797945 + AluSx SINE Alu 9 311 -1 427 267 76 76 chr9 82065032 82065204 -35797423 - MIR SINE MIR -54 208 37 282 358 86 6 chr9 82065566 82065728 -35796899 - MER5A DNA MER1_type 0 189 15 4365 155 42 86 chr9 82066033 82066527 -35796100 - L1PA16 LINE L1 0 6166 5652 1704 203 0 3 chr9 82066527 82066827 -35795800 - AluJo SINE Alu -13 299 1 4365 155 42 86 chr9 82066827 82067649 -35794978 - L1PA16 LINE L1 -514 5652 4942 22 35 0 0 chr9 82067788 82067817 -35794810 + AT_rich Low_complexity Low_complexity 1 29 0 1856 209 69 21 chr9 82067860 82068443 -35794184 + MER82 DNA MER2_type 1 647 -6 2089 102 3 11 chr9 82068765 82069048 -35793579 + AluSx SINE Alu 5 285 -27 21 36 0 0 chr9 82069092 82069120 -35793507 + AT_rich Low_complexity Low_complexity 1 28 0 308 264 45 0 chr9 82069436 82069546 -35793081 - MER104 DNA Tc2 -52 128 14 419 344 60 41 chr9 82069548 82069797 -35792830 - L1M4 LINE L1 -1487 4659 4416 198 103 0 0 chr9 82069797 82069826 -35792801 + (TCTA)n Simple_repeat Simple_repeat 4 32 0 419 344 60 41 chr9 82069826 82070088 -35792539 - L1M4 LINE L1 -1730 4416 4138 1992 111 14 30 chr9 82070605 82070902 -35791725 + AluSx SINE Alu 1 292 -20 7765 195 110 9 chr9 82071676 82073269 -35789358 - MER52A LTR ERV1 0 1755 3 276 279 57 14 chr9 82076178 82076300 -35786327 - MIR SINE MIR -58 150 67 2283 139 19 6 chr9 82076319 82076678 -35785949 + THE1B LTR MaLR 1 364 0 4619 235 34 1 chr9 82076680 82077698 -35784929 + THE1B-int LTR MaLR 3 1054 -597 4288 178 29 38 chr9 82077875 82078734 -35783893 - L1MB1 LINE L1 0 6168 5318 1365 180 16 62 chr9 82078734 82079040 -35783587 - AluJb SINE Alu -20 292 1 4288 178 29 38 chr9 82079040 82079434 -35783193 - L1MB1 LINE L1 -850 5318 4922 299 174 33 11 chr9 82079791 82079883 -35782744 + (TA)n Simple_repeat Simple_repeat 1 94 0 332 261 59 76 chr9 82080276 82080514 -35782113 - L1ME4a LINE L1 -164 5957 5724 27 29 0 0 chr9 82080605 82080639 -35781988 + AT_rich Low_complexity Low_complexity 1 34 0 414 356 76 4 chr9 82081051 82081276 -35781351 - MIR SINE MIR -16 246 6 23 33 0 0 chr9 82081747 82081777 -35780850 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chr9 82082063 82082089 -35780538 + AT_rich Low_complexity Low_complexity 1 26 0 328 233 132 82 chr9 82082481 82082700 -35779927 - L1M4 LINE L1 -3710 2436 2207 656 204 7 28 chr9 82082721 82082863 -35779764 - AluJb SINE Alu -17 295 157 23 78 0 0 chr9 82083657 82083708 -35778919 + AT_rich Low_complexity Low_complexity 1 51 0 554 278 87 30 chr9 82083791 82084099 -35778528 - L1ME LINE L1 -368 5802 5480 2219 94 3 3 chr9 82084149 82084448 -35778179 + AluSg SINE Alu 6 304 -6 379 299 67 6 chr9 82084482 82084646 -35777981 - L1ME LINE L1 -785 5361 5188 302 269 19 19 chr9 82084673 82084777 -35777850 - L1ME1 LINE L1 -20 6146 6043 1383 223 3 3 chr9 82084788 82085075 -35777552 + AluJo SINE Alu 6 292 -20 258 161 0 18 chr9 82085150 82085206 -35777421 - L1ME1 LINE L1 -200 5964 5910 370 275 21 14 chr9 82085235 82085377 -35777250 - L1M4 LINE L1 -875 5271 5129 21 36 0 0 chr9 82085443 82085471 -35777156 + AT_rich Low_complexity Low_complexity 1 28 0 31 26 0 0 chr9 82085595 82085633 -35776994 + AT_rich Low_complexity Low_complexity 1 38 0 2068 152 58 26 chr9 82085933 82086348 -35776279 - MSTA LTR MaLR 0 428 1 844 197 11 39 chr9 82086483 82086661 -35775966 + MER2 DNA MER2_type 1 173 -172 253 311 0 0 chr9 82086752 82086813 -35775814 + MER2 DNA MER2_type 285 345 0 21 71 0 0 chr9 82086843 82086885 -35775742 + AT_rich Low_complexity Low_complexity 1 42 0 25 65 0 0 chr9 82086911 82086957 -35775670 + AT_rich Low_complexity Low_complexity 1 46 0 1523 181 14 7 chr9 82087075 82087367 -35775260 + AluJo SINE Alu 1 294 -18 27 0 0 0 chr9 82087487 82087514 -35775113 + AT_rich Low_complexity Low_complexity 1 27 0 31 0 0 0 chr9 82087664 82087695 -35774932 + AT_rich Low_complexity Low_complexity 1 31 0 2177 63 40 27 chr9 82087856 82088155 -35774472 - AluY SINE Alu -8 303 1 2269 211 27 0 chr9 82088889 82089405 -35773222 - L1MB1 LINE L1 -6 6162 5633 1548 168 26 3 chr9 82089432 82089741 -35772886 + L1M3 LINE L1 5298 5613 -555 22 0 0 0 chr9 82089741 82089763 -35772864 + AT_rich Low_complexity Low_complexity 1 22 0 1592 143 0 99 chr9 82090112 82090434 -35772193 + AluY SINE Alu 1 290 -21 1147 124 65 5 chr9 82090995 82091181 -35771446 - MER30 DNA MER1_type -33 197 1 1620 183 10 10 chr9 82091210 82091510 -35771117 + AluJo SINE Alu 1 300 -12 22 0 0 0 chr9 82091548 82091570 -35771057 + AT_rich Low_complexity Low_complexity 1 22 0 2155 104 3 0 chr9 82092079 82092376 -35770251 - AluSp SINE Alu -15 298 1 22 0 0 0 chr9 82093225 82093247 -35769380 + AT_rich Low_complexity Low_complexity 1 22 0 687 200 48 33 chr9 82093865 82094075 -35768552 - L1MA8 LINE L1 -2 6289 6077 615 315 93 64 chr9 82094423 82094798 -35767829 - L2 LINE L2 -2 3311 2926 342 0 0 0 chr9 82096503 82096541 -35766086 + (TG)n Simple_repeat Simple_repeat 1 38 0 291 309 124 24 chr9 82096873 82097083 -35765544 + MIR SINE MIR 11 241 -21 554 235 0 0 chr9 82097647 82097749 -35764878 - LTR53 LTR ERVL -16 503 402 1851 243 121 16 chr9 82097766 82097926 -35764701 + L1MB8 LINE L1 4292 4434 -1712 462 152 13 0 chr9 82097926 82098005 -35764622 + MADE1 DNA Mariner 1 80 0 1851 243 121 16 chr9 82098005 82098507 -35764120 + L1MB8 LINE L1 4434 5031 -1115 2023 157 15 98 chr9 82098507 82098977 -35763650 + Tigger2a DNA MER2_type 4 434 0 1851 243 121 16 chr9 82098977 82099001 -35763626 + L1MB8 LINE L1 5031 5051 -1095 1254 119 0 11 chr9 82099018 82099195 -35763432 + AluSg SINE Alu 1 175 -135 2551 238 78 11 chr9 82099240 82100197 -35762430 + L1MB8 LINE L1 5071 6090 -88 2226 264 64 2 chr9 82100215 82101025 -35761602 - L1 LINE L1 -2794 3352 2493 409 206 62 0 chr9 82101022 82101119 -35761508 + L1 LINE L1 3842 3944 -2202 * 2227 198 77 67 chr9 82101125 82101841 -35760786 + MER50 LTR ERV1 10 732 -2 2528 126 0 7 chr9 82101869 82102250 -35760377 - THE1C LTR MaLR 0 432 1 2190 144 71 18 chr9 82102250 82102687 -35759940 + L1 LINE L1 3962 4421 -1725 883 181 115 52 chr9 82102682 82102969 -35759658 + L1MA9 LINE L1 5999 6303 -9 * 910 251 127 56 chr9 82103177 82104010 -35758617 + L1MEc LINE L1 1361 2252 -4144 31 0 0 0 chr9 82104672 82104703 -35757924 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr9 82105992 82106021 -35756606 + AT_rich Low_complexity Low_complexity 1 29 0 565 291 39 29 chr9 82106724 82107030 -35755597 - L1M4 LINE L1 -890 5256 4948 285 285 177 23 chr9 82107056 82107186 -35755441 - MLT1H LTR MaLR -18 531 382 333 261 34 58 chr9 82107465 82107672 -35754955 + L1MEc LINE L1 2495 2696 -3519 22 0 0 0 chr9 82107808 82107830 -35754797 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 82108037 82108058 -35754569 + AT_rich Low_complexity Low_complexity 1 21 0 1892 148 0 0 chr9 82108594 82108901 -35753726 + AluSx SINE Alu 1 307 0 2384 78 0 3 chr9 82108992 82109301 -35753326 + AluY SINE Alu 1 308 -3 22 35 0 0 chr9 82109361 82109390 -35753237 + AT_rich Low_complexity Low_complexity 1 29 0 372 281 94 28 chr9 82109435 82109827 -35752800 - L1M4 LINE L1 -3519 2627 2210 2573 101 11 48 chr9 82109960 82110396 -35752231 + L1PB1 LINE L1 5361 5780 -371 218 242 15 0 chr9 82110399 82110465 -35752162 + (CATA)n Simple_repeat Simple_repeat 1 67 0 820 129 0 1 chr9 82110473 82110608 -35752019 + L1PB1 LINE L1 5776 5909 -242 1485 108 0 0 chr9 82110813 82111027 -35751600 + L1PB1 LINE L1 5938 6151 0 22 56 0 0 chr9 82111214 82111250 -35751377 + AT_rich Low_complexity Low_complexity 1 36 0 2005 207 54 44 chr9 82111952 82112062 -35750565 - L1MC3 LINE L1 -2 8201 8094 1844 143 11 0 chr9 82112062 82112341 -35750286 - AluY SINE Alu -28 283 2 2005 207 54 44 chr9 82112341 82112820 -35749807 - L1MC3 LINE L1 -109 8094 7606 * 3329 235 82 26 chr9 82112817 82114162 -35748465 - L1MC3 LINE L1 -743 5821 5319 1182 221 69 53 chr9 82114173 82114698 -35747929 - L1MC3 LINE L1 -1350 5214 4682 21 36 0 0 chr9 82114701 82114729 -35747898 + AT_rich Low_complexity Low_complexity 1 28 0 5818 215 32 10 chr9 82114774 82115284 -35747343 + L1PB4 LINE L1 3883 4380 -1776 2799 3 0 0 chr9 82115284 82115590 -35747037 + AluYa5 SINE Alu 1 306 -5 5818 215 32 10 chr9 82115590 82116473 -35746154 + L1PB4 LINE L1 4380 5242 -914 207 69 0 0 chr9 82116473 82116502 -35746125 + (CAA)n Simple_repeat Simple_repeat 2 30 0 5818 215 32 10 chr9 82116502 82117335 -35745292 + L1PB4 LINE L1 5242 6154 -2 2576 295 98 18 chr9 82117336 82118927 -35743700 - L1MC3 LINE L1 -1939 4625 2907 241 200 0 0 chr9 82118943 82118998 -35743629 - Alu SINE Alu -6 296 242 420 226 48 6 chr9 82119002 82119078 -35743549 - L1MC3 LINE L1 -3949 2615 2623 1997 209 14 27 chr9 82119078 82119518 -35743109 - Tigger2a DNA MER2_type 0 434 1 420 226 48 6 chr9 82119518 82119640 -35742987 - L1MC3 LINE L1 -3940 2624 2509 372 309 74 16 chr9 82119661 82119904 -35742723 - L1MC3 LINE L1 -4106 2458 2202 667 254 100 28 chr9 82119915 82120088 -35742539 - L1MC3 LINE L1 -4430 2134 1975 2565 115 0 6 chr9 82120088 82120454 -35742173 - THE1B LTR MaLR 0 364 1 667 254 100 28 chr9 82120454 82120842 -35741785 - L1MC3 LINE L1 -4589 1975 1441 1553 272 62 57 chr9 82120875 82121582 -35741045 - L1MC3 LINE L1 -5334 711 1 573 125 31 10 chr9 82121721 82121817 -35740810 + AluSg/x SINE Alu 200 297 -15 21 0 0 0 chr9 82121920 82121941 -35740686 + AT_rich Low_complexity Low_complexity 1 21 0 246 105 0 0 chr9 82123105 82123143 -35739484 + (TG)n Simple_repeat Simple_repeat 2 39 0 215 189 19 0 chr9 82123182 82123235 -35739392 + GA-rich Low_complexity Low_complexity 2 55 0 331 268 83 78 chr9 82123373 82123578 -35739049 + HAL1b LINE L1 626 831 -517 24 96 0 0 chr9 82123749 82123822 -35738805 + AT_rich Low_complexity Low_complexity 1 73 0 29 78 0 0 chr9 82123842 82123906 -35738721 + AT_rich Low_complexity Low_complexity 1 64 0 3600 173 27 4 chr9 82123983 82124687 -35737940 - L1MA9 LINE L1 -248 6064 5345 1843 203 90 31 chr9 82125016 82125558 -35737069 - L1MB8 LINE L1 -12 6166 5593 1138 159 9 17 chr9 82125577 82125810 -35736817 + L1MA4 LINE L1 6070 6300 0 621 265 43 57 chr9 82125863 82126093 -35736534 - L1M4b LINE L1 -5702 1157 931 10593 209 44 61 chr9 82128014 82128844 -35733783 - L1PB3 LINE L1 -2 6209 5367 16791 25 3 2 chr9 82128844 82131598 -35731029 + L1PA3 LINE L1 3399 6155 0 10593 209 44 61 chr9 82131598 82133821 -35728806 - L1PB3 LINE L1 -844 5367 3108 1202 218 13 55 chr9 82133821 82134133 -35728494 - AluJo SINE Alu -3 299 1 10593 209 44 61 chr9 82134133 82137165 -35725462 - L1PB3 LINE L1 -3103 3108 181 652 210 24 0 chr9 82137167 82137291 -35725336 - L1PB3 LINE L1 -6070 134 8 * 3955 286 23 40 chr9 82137262 82138928 -35723699 - L1PBa LINE L1 -5223 1640 3 193 377 93 11 chr9 82139274 82139457 -35723170 - L2 LINE L2 -933 2381 2184 376 129 27 59 chr9 82139469 82139655 -35722972 + (TA)n Simple_repeat Simple_repeat 1 180 0 1698 162 46 32 chr9 82140223 82140593 -35722034 + THE1C LTR MaLR 1 375 0 306 0 0 0 chr9 82140851 82140885 -35721742 + (TTA)n Simple_repeat Simple_repeat 1 34 0 1047 198 13 8 chr9 82141817 82142055 -35720572 + L1MA4 LINE L1 6061 6299 -1 4089 271 48 49 chr9 82142133 82143975 -35718652 - L1MC3 LINE L1 -9 7776 5937 227 77 0 26 chr9 82143980 82144019 -35718608 + (TAA)n Simple_repeat Simple_repeat 2 39 0 1267 166 18 22 chr9 82144312 82144589 -35718038 - L1MA9 LINE L1 -5 6195 5920 8693 204 64 33 chr9 82144732 82144959 -35717668 - L1MA9 LINE L1 -291 5909 5690 297 0 0 0 chr9 82144959 82144992 -35717635 + (TG)n Simple_repeat Simple_repeat 2 34 0 8693 204 64 33 chr9 82144992 82145965 -35716662 - L1MA9 LINE L1 -510 5690 4748 716 212 0 0 chr9 82145965 82146097 -35716530 - FLAM_C SINE Alu -1 132 1 8693 204 64 33 chr9 82146097 82148122 -35714505 - L1MA9 LINE L1 -1452 4748 2590 1425 312 102 16 chr9 82148143 82148872 -35713755 - L1MA9 LINE L1 -5217 738 4 313 292 26 26 chr9 82149003 82149116 -35713511 - MLT1F1 LTR MaLR -3 564 452 1689 154 11 0 chr9 82149394 82149679 -35712948 + L1M2 LINE L1 5522 5809 -482 973 147 10 19 chr9 82151130 82151326 -35711301 - THE1B LTR MaLR -2 362 176 1131 156 26 10 chr9 82151361 82151553 -35711074 - THE1B LTR MaLR -167 197 3 9322 124 7 2 chr9 82151557 82152908 -35709719 - THE1B-int LTR MaLR -5 1575 218 465 57 71 29 chr9 82152908 82152978 -35709649 - THE1B LTR MaLR -291 73 1 416 320 39 0 chr9 82153006 82153134 -35709493 + MIR SINE MIR 5 137 -125 2560 3 0 0 chr9 82153851 82154138 -35708489 + L1HS LINE L1 5866 6152 -3 297 0 0 0 chr9 82154152 82154185 -35708442 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 1236 183 62 45 chr9 82154521 82154811 -35707816 + AluJo SINE Alu 7 301 -11 282 240 0 0 chr9 82154913 82154963 -35707664 - MER45C DNA AcHobo -4 949 900 * 399 364 87 11 chr9 82154960 82155224 -35707403 - MER45C DNA AcHobo -321 632 349 * 476 333 41 0 chr9 82155213 82155384 -35707243 - MER45C DNA AcHobo -775 178 1 24 0 0 0 chr9 82155428 82155452 -35707175 + AT_rich Low_complexity Low_complexity 1 24 0 4303 206 61 15 chr9 82155709 82157030 -35705597 + L1MA10 LINE L1 4951 6334 0 1852 186 49 5 chr9 82158312 82158682 -35703945 + MLT1B LTR MaLR 2 387 -3 269 186 14 0 chr9 82160375 82160445 -35702182 + (TA)n Simple_repeat Simple_repeat 2 72 0 424 109 82 3 chr9 82160809 82161134 -35701493 + (TA)n Simple_repeat Simple_repeat 1 350 0 22 35 0 0 chr9 82161308 82161337 -35701290 + AT_rich Low_complexity Low_complexity 1 29 0 2144 109 7 10 chr9 82161675 82161978 -35700649 - AluSx SINE Alu -10 302 1 648 229 0 51 chr9 82162884 82163041 -35699586 + FRAM SINE Alu 2 150 -26 29 28 0 0 chr9 82163041 82163077 -35699550 + AT_rich Low_complexity Low_complexity 1 36 0 182 267 0 0 chr9 82163577 82163622 -35699005 - MIR SINE MIR -71 191 147 6006 25 6 3 chr9 82164307 82165022 -35697605 - L1PA2 LINE L1 -2 6153 5437 2061 12 0 0 chr9 82165022 82165330 -35697297 + L1PA2 LINE L1 5151 5458 -697 252 310 0 0 chr9 82166046 82166104 -35696523 + MIR3 SINE MIR 146 203 -5 12211 246 20 13 chr9 82166578 82170514 -35692113 + L1PA15-16 LINE L1 1805 5766 -1083 13014 38 2 43 chr9 82170581 82172329 -35690298 - L1P LINE L1 -3039 3107 1432 1721 62 0 0 chr9 82172329 82172553 -35690074 + L1PA4 LINE L1 5932 6155 0 1204 325 12 22 chr9 82173001 82173417 -35689210 + L1M3a LINE L1 1542 1953 -5533 3072 277 42 26 chr9 82174324 82175562 -35687065 + L1M3a LINE L1 1776 3023 -4095 2437 111 14 0 chr9 82175674 82176024 -35686603 - THE1A LTR MaLR 0 355 1 10804 112 8 9 chr9 82176024 82177606 -35685021 - THE1A-int LTR MaLR 0 1580 1 2459 108 6 0 chr9 82177606 82177959 -35684668 - THE1A LTR MaLR 0 355 1 7096 214 35 20 chr9 82177995 82179999 -35682628 + L1M3a LINE L1 3361 5401 -2164 1905 156 7 0 chr9 82179999 82180288 -35682339 + AluSg SINE Alu 1 291 -19 7096 214 35 20 chr9 82180288 82180361 -35682266 + L1M3a LINE L1 5401 5471 -2094 668 240 14 0 chr9 82180791 82180937 -35681690 - MER77 LTR ERV1 -453 152 5 273 295 64 0 chr9 82181490 82181568 -35681059 - L2 LINE L2 -34 3279 3197 187 363 65 24 chr9 82181636 82181760 -35680867 - MIR SINE MIR -116 146 18 2069 73 0 0 chr9 82181960 82182219 -35680408 - AluY SINE Alu -52 259 1 2472 62 3 0 chr9 82182425 82182732 -35679895 - AluY SINE Alu -1 310 3 1166 159 82 9 chr9 82182836 82183056 -35679571 - MER46A DNA MER2_type 0 236 1 21 36 0 0 chr9 82183285 82183313 -35679314 + AT_rich Low_complexity Low_complexity 1 28 0 369 262 148 34 chr9 82183430 82183579 -35679048 + MIR SINE MIR 2 167 -95 191 152 22 0 chr9 82183646 82183692 -35678935 + (TTA)n Simple_repeat Simple_repeat 1 47 0 2278 81 3 0 chr9 82183949 82184244 -35678383 - AluSg SINE Alu -14 296 1 1017 218 18 18 chr9 82184464 82184689 -35677938 - AluJb SINE Alu -70 242 18 1968 195 40 71 chr9 82184743 82185322 -35677305 + L1MC2 LINE L1 5776 6336 -8 601 222 0 0 chr9 82185910 82186045 -35676582 - L1MA3 LINE L1 -2 6303 6169 22 70 0 0 chr9 82186305 82186348 -35676279 + AT_rich Low_complexity Low_complexity 1 43 0 920 254 111 17 chr9 82186755 82187369 -35675258 + L1MB7 LINE L1 5488 6183 -1 30 69 0 0 chr9 82187492 82187550 -35675077 + AT_rich Low_complexity Low_complexity 1 58 0 21 82 0 0 chr9 82187924 82187973 -35674654 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr9 82188179 82188200 -35674427 + AT_rich Low_complexity Low_complexity 1 21 0 182 304 54 0 chr9 82188200 82188256 -35674371 + L2 LINE L2 2610 2668 -646 2609 102 5 5 chr9 82189771 82190144 -35672483 + THE1C LTR MaLR 1 373 -2 620 255 40 40 chr9 82190261 82190512 -35672115 - LTR37A LTR ERV1 -5 421 171 1836 294 119 14 chr9 82190555 82191567 -35671060 + L1MEc LINE L1 216 1333 -5063 466 296 36 39 chr9 82191673 82191980 -35670647 + L1MEc LINE L1 1653 1958 -4438 1961 179 73 0 chr9 82192067 82192436 -35670191 - MER57A LTR ERV1 0 403 8 460 294 45 21 chr9 82192489 82192778 -35669849 + L1MEc LINE L1 2081 2376 -4020 599 129 0 0 chr9 82192813 82192898 -35669729 + AluJb SINE Alu 209 293 -19 492 214 0 0 chr9 82192905 82193017 -35669610 + (CA)n Simple_repeat Simple_repeat 2 113 0 243 290 0 21 chr9 82193017 82193110 -35669517 + L1MC4 LINE L1 6614 6704 -1338 231 36 0 0 chr9 82193122 82193150 -35669477 + (CA)n Simple_repeat Simple_repeat 2 29 0 289 138 52 17 chr9 82193164 82193222 -35669405 - MER67D LTR ERV1 -326 188 129 242 95 0 0 chr9 82193389 82193431 -35669196 - LTR66 LTR ERVL -175 435 394 378 128 47 23 chr9 82193577 82193749 -35668878 + (TA)n Simple_repeat Simple_repeat 1 176 0 22 35 0 0 chr9 82194281 82194310 -35668317 + AT_rich Low_complexity Low_complexity 1 29 0 1882 137 10 22 chr9 82194554 82194867 -35667760 + AluSx SINE Alu 1 309 -3 339 245 272 14 chr9 82196293 82196440 -35666187 + MIR SINE MIR 51 235 -27 376 230 26 7 chr9 82196800 82196952 -35665675 + (TA)n Simple_repeat Simple_repeat 1 155 0 1658 155 57 3 chr9 82196995 82197311 -35665316 + L1MA2 LINE L1 5899 6231 -73 1636 159 7 4 chr9 82197332 82197602 -35665025 + AluJb SINE Alu 22 292 -20 836 344 80 30 chr9 82197619 82198422 -35664205 - L2 LINE L2 -273 3040 2200 1137 178 35 15 chr9 82199758 82200017 -35662610 - L1MA8 LINE L1 -2 6289 6026 2309 46 3 7 chr9 82200101 82200421 -35662206 + AluY SINE Alu 1 319 0 215 59 0 29 chr9 82200544 82200578 -35662049 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 495 0 0 0 chr9 82200742 82200797 -35661830 + (TG)n Simple_repeat Simple_repeat 2 56 0 324 298 0 0 chr9 82201135 82201239 -35661388 + CT-rich Low_complexity Low_complexity 3 106 0 287 308 11 33 chr9 82201599 82201781 -35660846 + CT-rich Low_complexity Low_complexity 2 179 0 600 216 188 0 chr9 82203230 82203406 -35659221 - MER3 DNA MER1_type 0 209 1 206 115 0 82 chr9 82203470 82203531 -35659096 + (TTA)n Simple_repeat Simple_repeat 3 58 0 2355 65 44 0 chr9 82204163 82204457 -35658170 + AluY SINE Alu 1 307 -4 500 379 101 18 chr9 82204490 82204947 -35657680 + L3 LINE CR1 1082 1576 -1 399 272 87 21 chr9 82206577 82206864 -35655763 + L1ME2 LINE L1 2785 3090 -3056 1074 276 57 58 chr9 82206872 82207720 -35654907 + L1ME2 LINE L1 3599 4445 -1701 1071 274 27 30 chr9 82207761 82208166 -35654461 + L1ME2 LINE L1 5652 6055 -109 551 201 6 98 chr9 82209472 82209636 -35652991 + MER20 DNA MER1_type 1 149 -70 21 36 0 0 chr9 82211725 82211753 -35650874 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr9 82212104 82212125 -35650502 + AT_rich Low_complexity Low_complexity 1 21 0 1509 294 33 15 chr9 82212572 82213052 -35649575 - MLT1E2 LTR MaLR 0 626 138 206 203 13 25 chr9 82213222 82213301 -35649326 + (TA)n Simple_repeat Simple_repeat 2 79 0 203 264 14 14 chr9 82213677 82213749 -35648878 + (TCTA)n Simple_repeat Simple_repeat 2 73 0 2376 177 26 16 chr9 82213867 82214015 -35648612 - L1MA6 LINE L1 0 6357 6212 2687 146 9 0 chr9 82214015 82214439 -35648188 - MSTA LTR MaLR 0 428 1 2376 177 26 16 chr9 82214439 82214788 -35647839 - L1MA6 LINE L1 -145 6212 5855 12533 205 42 21 chr9 82215041 82217743 -35644884 - L1MA6 LINE L1 -594 5763 2978 2250 115 0 3 chr9 82217743 82218055 -35644572 - AluSq SINE Alu -2 311 1 12533 205 42 21 chr9 82218055 82218757 -35643870 - L1MA6 LINE L1 -3379 2978 2292 1089 235 31 22 chr9 82218785 82219108 -35643519 - L1 LINE L1 -1067 5136 4811 4501 154 18 8 chr9 82219148 82219509 -35643118 - L1PB2 LINE L1 -1 6150 5794 228 35 0 0 chr9 82219509 82219538 -35643089 + (TA)n Simple_repeat Simple_repeat 1 29 0 4501 154 18 8 chr9 82219538 82219946 -35642681 - L1PB2 LINE L1 -357 5794 5373 3175 192 26 5 chr9 82219942 82220521 -35642106 - L1MA6 LINE L1 -5613 591 1 * 3801 292 26 28 chr9 82220490 82221861 -35640766 - L1PBa LINE L1 -5228 1635 268 2474 232 9 63 chr9 82221854 82221905 -35640722 - MSTD-int LTR MaLR -1039 696 644 * 2227 115 0 0 chr9 82221905 82222200 -35640427 - AluSg SINE Alu -13 297 3 2474 232 9 63 chr9 82222200 82222881 -35639746 - MSTD-int LTR MaLR -1091 644 3 417 129 14 0 chr9 82222881 82222951 -35639676 - MSTD LTR MaLR -2 394 324 3458 120 22 19 chr9 82222952 82223542 -35639085 + L1MA3 LINE L1 5712 6303 -2 1497 218 26 3 chr9 82223582 82223921 -35638706 + L1 LINE L1 3883 4229 -1917 1529 201 21 3 chr9 82224030 82224403 -35638224 - L1 LINE L1 -2673 3473 3094 1481 199 18 101 chr9 82224676 82225074 -35637553 - MLT1A1 LTR MaLR 0 365 1 2640 253 42 0 chr9 82225101 82225675 -35636952 - MLT1A1-int LTR MaLR -31 1704 1107 777 299 6 0 chr9 82225717 82225891 -35636736 - MER5A DNA MER1_type -14 175 1 189 213 0 0 chr9 82226851 82226898 -35635729 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 2115 120 0 0 chr9 82227052 82227351 -35635276 + AluSx SINE Alu 1 299 -13 240 149 0 0 chr9 82227642 82227689 -35634938 + (TAA)n Simple_repeat Simple_repeat 2 48 0 37 62 0 0 chr9 82227945 82228010 -35634617 + AT_rich Low_complexity Low_complexity 1 65 0 23 78 0 0 chr9 82228046 82228097 -35634530 + AT_rich Low_complexity Low_complexity 1 51 0 26 30 0 0 chr9 82228951 82228984 -35633643 + AT_rich Low_complexity Low_complexity 1 33 0 226 341 11 22 chr9 82229406 82229497 -35633130 + L2 LINE L2 3189 3278 -35 968 203 150 58 chr9 82229569 82229929 -35632698 + MSTD LTR MaLR 4 396 0 1553 234 11 6 chr9 82229939 82230293 -35632334 + MSTD-int LTR MaLR 6 361 -1374 1262 33 0 0 chr9 82230291 82230441 -35632186 - L1PA4 LINE L1 -208 5947 5798 * 1833 32 0 0 chr9 82230441 82230658 -35631969 + L1PA4 LINE L1 5933 6152 -3 4715 243 85 39 chr9 82230667 82231656 -35630971 + MSTD-int LTR MaLR 344 1411 -324 1575 204 13 25 chr9 82231656 82231970 -35630657 + AluJb SINE Alu 1 310 -2 4715 243 85 39 chr9 82231970 82232311 -35630316 + MSTD-int LTR MaLR 1411 1735 0 912 256 125 39 chr9 82232314 82232673 -35629954 + MSTD LTR MaLR 4 393 -3 340 341 51 32 chr9 82233011 82233228 -35629399 + L1MC4 LINE L1 6828 7048 -994 4913 265 36 40 chr9 82234924 82236410 -35626217 + L1M3b LINE L1 161 1640 -4641 2404 230 28 35 chr9 82236420 82236462 -35626165 + L1M3b LINE L1 2505 2546 -3804 705 223 46 124 chr9 82236462 82236856 -35625771 - MLT1A1 LTR MaLR -2 363 1 2404 230 28 35 chr9 82236856 82237396 -35625231 + L1M3b LINE L1 2546 3084 -3266 3286 65 0 9 chr9 82237396 82237839 -35624788 + L1PA7 LINE L1 5716 6154 0 2404 230 28 35 chr9 82237839 82237934 -35624693 + L1M3b LINE L1 3084 3178 -3172 2834 46 0 0 chr9 82238038 82238388 -35624239 + L1PA4 LINE L1 5805 6154 -1 2304 85 3 0 chr9 82238599 82238893 -35623734 - AluSc SINE Alu -14 295 1 2882 209 5 5 chr9 82239204 82239763 -35622864 + MER68 LTR ERV1 4 562 0 230 259 61 53 chr9 82242106 82242237 -35620390 - MIR SINE MIR -2 260 129 2339 92 3 0 chr9 82242250 82242553 -35620074 - AluSc SINE Alu -5 304 1 274 355 107 42 chr9 82243759 82244114 -35618513 - L2 LINE L2 -459 2855 2478 28 0 0 0 chr9 82245292 82245320 -35617307 + AT_rich Low_complexity Low_complexity 1 28 0 210 91 0 0 chr9 82246074 82246107 -35616520 + (CAA)n Simple_repeat Simple_repeat 2 34 0 650 90 0 10 chr9 82246157 82246257 -35616370 + (TTCC)n Simple_repeat Simple_repeat 2 100 0 5985 97 1 46 chr9 82246543 82248315 -35614312 + L1PA13 LINE L1 4449 6159 -4 1985 134 13 0 chr9 82248677 82248982 -35613645 + AluSx SINE Alu 1 309 -3 251 290 0 14 chr9 82249118 82249187 -35613440 + MIR SINE MIR 87 154 -108 534 287 61 47 chr9 82249298 82249594 -35613033 - L1M4 LINE L1 -2972 3174 2875 183 80 0 0 chr9 82251530 82251555 -35611072 + (A)n Simple_repeat Simple_repeat 1 25 0 277 293 193 50 chr9 82251854 82252233 -35610394 - Charlie8 DNA MER1_type -1923 494 62 571 250 125 6 chr9 82252784 82252952 -35609675 + MIR SINE MIR 73 260 -2 30 0 0 0 chr9 82252952 82252982 -35609645 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr9 82254458 82254479 -35608148 + AT_rich Low_complexity Low_complexity 1 21 0 2257 98 3 3 chr9 82254537 82254842 -35607785 - AluSp SINE Alu -8 305 1 3669 185 42 38 chr9 82255228 82256066 -35606561 + L1MB5 LINE L1 5287 6127 -47 1372 182 0 69 chr9 82256088 82256363 -35606264 - AluJo SINE Alu -52 260 5 269 179 0 0 chr9 82256366 82256422 -35606205 + L1MB5 LINE L1 6118 6173 -1 225 0 0 0 chr9 82256909 82256934 -35605693 + (T)n Simple_repeat Simple_repeat 1 25 0 206 345 14 56 chr9 82257744 82257786 -35604841 + L2 LINE L2 2835 2877 -395 219 88 0 0 chr9 82257786 82257820 -35604807 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1702 151 4 0 chr9 82257828 82258087 -35604540 - AluSx SINE Alu -52 260 1 206 345 14 56 chr9 82258087 82258177 -35604450 + L2 LINE L2 2884 2970 -302 2127 116 7 0 chr9 82258302 82258605 -35604022 - AluSx SINE Alu -7 305 1 629 349 92 36 chr9 82259066 82259120 -35603507 - L2 LINE L2 -219 3053 3003 2218 108 0 7 chr9 82259120 82259425 -35603202 + AluSg SINE Alu 1 303 -7 629 349 92 36 chr9 82259425 82260087 -35602540 - L2 LINE L2 -269 3003 2288 192 77 0 0 chr9 82260709 82260735 -35601892 + (TG)n Simple_repeat Simple_repeat 1 26 0 278 229 9 67 chr9 82261181 82261286 -35601341 - L2 LINE L2 -1046 2268 2170 1473 103 36 0 chr9 82261595 82261819 -35600808 + L1PA13 LINE L1 5891 6122 -41 31487 42 33 1 chr9 82261823 82265807 -35596820 + L1P LINE L1 2 4110 -2036 789 67 0 0 chr9 82265819 82265960 -35596667 + L1PA2 LINE L1 6050 6190 0 225 61 0 0 chr9 82265960 82265993 -35596634 + L1PA13 LINE L1 6112 6144 -19 240 377 0 0 chr9 82266986 82267055 -35595572 - L2 LINE L2 -25 3247 3179 21 0 0 0 chr9 82268152 82268173 -35594454 + AT_rich Low_complexity Low_complexity 1 21 0 3909 103 4 0 chr9 82268276 82268828 -35593799 - MER41A LTR ERV1 0 554 1 354 98 0 0 chr9 82269090 82269141 -35593486 + (TG)n Simple_repeat Simple_repeat 2 52 0 211 93 0 93 chr9 82269168 82269211 -35593416 + MIR SINE MIR 118 156 -106 265 228 0 0 chr9 82269256 82269313 -35593314 + Tigger5 DNA MER2_type 2262 2318 -5 * 366 263 0 0 chr9 82269312 82269392 -35593235 - Tigger5 DNA MER2_type -2243 80 1 670 258 76 51 chr9 82270685 82270960 -35591667 + L1ME3A LINE L1 5881 6162 -8 22 70 0 0 chr9 82272100 82272143 -35590484 + AT_rich Low_complexity Low_complexity 1 43 0 205 404 18 0 chr9 82272856 82272970 -35589657 + L2 LINE L2 2828 2943 -329 684 236 4 49 chr9 82273303 82273437 -35589190 + L1MD2 LINE L1 4811 4933 -1213 180 0 0 0 chr9 82273437 82273457 -35589170 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 684 236 4 49 chr9 82273457 82273547 -35589080 + L1MD2 LINE L1 4933 5025 -1121 2213 199 54 9 chr9 82273548 82274011 -35588616 + L1MD2 LINE L1 5407 5890 -469 840 185 185 0 chr9 82274020 82274236 -35588391 + L1MD2 LINE L1 6087 6342 -17 355 256 22 0 chr9 82274271 82274361 -35588266 - L1MDa LINE L1 -6428 112 21 336 48 0 0 chr9 82274474 82274516 -35588111 + (TG)n Simple_repeat Simple_repeat 2 43 0 26 50 0 0 chr9 82274702 82274742 -35587885 + AT_rich Low_complexity Low_complexity 1 40 0 566 184 31 0 chr9 82276340 82276433 -35586194 - Tigger2 DNA MER2_type -10 2708 2613 597 113 21 0 chr9 82276433 82276530 -35586097 - MER57B LTR ERV1 0 434 336 363 290 107 54 chr9 82276718 82277079 -35585548 + L2 LINE L2 2665 3117 -196 252 287 33 77 chr9 82277607 82277788 -35584839 + L2 LINE L2 3131 3303 -10 645 202 24 0 chr9 82277815 82277939 -35584688 - FLAM_A SINE Alu 0 142 16 1494 155 11 0 chr9 82277964 82278235 -35584392 + L1MA4 LINE L1 6021 6294 -6 338 266 84 39 chr9 82278325 82278479 -35584148 + L1M4 LINE L1 4307 4467 -1679 466 29 44 0 chr9 82278504 82278572 -35584055 - L1PA4 LINE L1 -2 6153 6083 502 284 73 78 chr9 82278805 82279410 -35583217 - L1M4 LINE L1 -1941 4205 3604 449 268 13 13 chr9 82279551 82279704 -35582923 - L1ME1 LINE L1 -3 6163 6011 253 242 18 66 chr9 82279708 82279852 -35582775 + L1ME1 LINE L1 5868 6005 -159 288 357 48 12 chr9 82280019 82280187 -35582440 - MIR SINE MIR -32 230 57 2589 106 0 11 chr9 82280244 82280611 -35582016 - THE1B LTR MaLR -1 363 1 9242 108 90 38 chr9 82280611 82282113 -35580514 - THE1B-int LTR MaLR 0 1580 1 2457 133 6 0 chr9 82282113 82282475 -35580152 - THE1B LTR MaLR 0 364 1 22 0 0 0 chr9 82283321 82283343 -35579284 + AT_rich Low_complexity Low_complexity 1 22 0 2321 70 7 0 chr9 82283630 82283932 -35578695 - AluY SINE Alu -7 304 1 334 182 39 0 chr9 82284074 82284151 -35578476 + MADE1 DNA Mariner 1 80 0 568 272 30 52 chr9 82285179 82285411 -35577216 + L1MB7 LINE L1 5936 6162 -22 269 89 22 0 chr9 82285508 82285553 -35577074 + (CA)n Simple_repeat Simple_repeat 2 47 0 2089 132 7 0 chr9 82285575 82285878 -35576749 - AluSx SINE Alu -5 307 3 405 0 0 0 chr9 82287035 82287080 -35575547 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 2433 73 129 6 chr9 82287206 82287562 -35575065 + MLT2A1 LTR ERVL 1 400 -44 264 200 0 0 chr9 82287562 82287617 -35575010 + (CATATA)n Simple_repeat Simple_repeat 6 60 0 246 173 58 0 chr9 82287617 82287669 -35574958 + MLT2A1 LTR ERVL 399 453 0 1893 163 41 24 chr9 82287946 82288315 -35574312 - L1PB4 LINE L1 0 6156 5782 34 42 0 0 chr9 82288315 82288363 -35574264 + AT_rich Low_complexity Low_complexity 1 48 0 2850 140 11 59 chr9 82288363 82288992 -35573635 - L1PB4 LINE L1 -369 5787 5186 23 86 0 0 chr9 82289389 82289447 -35573180 + AT_rich Low_complexity Low_complexity 1 58 0 1636 134 163 83 chr9 82289858 82290232 -35572395 - MER4A LTR ERV1 0 664 261 595 141 0 10 chr9 82290232 82290331 -35572296 - MER4A LTR ERV1 -566 98 1 296 294 76 0 chr9 82290535 82290627 -35572000 - MER63 DNA MER1_type -110 726 2 233 238 16 0 chr9 82290652 82290715 -35571912 + L1ME1 LINE L1 3972 4035 -2111 316 247 147 65 chr9 82290759 82290990 -35571637 + L1ME1 LINE L1 4757 5006 -1140 * 353 325 30 38 chr9 82290981 82291218 -35571409 + L1ME2 LINE L1 5919 6153 -11 440 285 21 14 chr9 82291316 82291460 -35571167 + L1ME1 LINE L1 5883 6027 -139 3268 216 37 14 chr9 82291496 82292331 -35570296 - L1 LINE L1 -2115 4031 3178 557 289 101 42 chr9 82292350 82293073 -35569554 + L1M4 LINE L1 2799 3564 -2582 24 0 0 0 chr9 82293836 82293860 -35568767 + AT_rich Low_complexity Low_complexity 1 24 0 532 232 40 8 chr9 82294058 82294183 -35568444 - MSTB LTR MaLR -84 342 214 215 167 61 0 chr9 82294216 82294282 -35568345 + (TA)n Simple_repeat Simple_repeat 1 70 0 24 0 0 0 chr9 82294499 82294523 -35568104 + AT_rich Low_complexity Low_complexity 1 24 0 21 100 0 0 chr9 82294555 82294625 -35568002 + AT_rich Low_complexity Low_complexity 1 70 0 3343 228 41 6 chr9 82294955 82295778 -35566849 - Tigger6a DNA MER2_type -19 1064 213 739 182 0 0 chr9 82295781 82295902 -35566725 + LOR1-int LTR ERV1 95 215 -7905 492 287 39 8 chr9 82295942 82296071 -35566556 + MSTB LTR MaLR 213 345 -81 252 383 8 8 chr9 82296168 82296288 -35566339 + L1P4 LINE L1 892 1011 -6563 4168 250 20 19 chr9 82296347 82297707 -35564920 + L1P4 LINE L1 2237 3605 -3979 2023 235 52 56 chr9 82297707 82298470 -35564157 - L1P4 LINE L1 -2380 4561 3802 * 6347 214 33 12 chr9 82298468 82299401 -35563226 + L1P4 LINE L1 4555 5526 -1435 182 37 37 0 chr9 82299401 82299428 -35563199 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 6347 214 33 12 chr9 82299428 82300199 -35562428 + L1P4 LINE L1 5526 6280 -681 1851 151 14 0 chr9 82300208 82300500 -35562127 + AluSx SINE Alu 1 296 -16 548 181 101 7 chr9 82300612 82300761 -35561866 + L1MB8 LINE L1 6010 6172 -6 317 261 114 38 chr9 82301250 82301434 -35561193 + MLT1L LTR MaLR 394 591 -24 1203 285 77 12 chr9 82301898 82302564 -35560063 - L1MCa LINE L1 -1702 5239 4531 305 215 46 0 chr9 82302696 82302761 -35559866 - MER20 DNA MER1_type -1 218 151 1556 288 66 41 chr9 82302766 82303822 -35558805 - L1MCa LINE L1 -3234 3707 2680 900 279 18 0 chr9 82303822 82304041 -35558586 + MER58A DNA MER1_type 2 224 0 1556 288 66 41 chr9 82304041 82304694 -35557933 - L1MCa LINE L1 -4261 2680 1777 1896 162 0 0 chr9 82304694 82304991 -35557636 + AluSx SINE Alu 1 297 -15 1556 288 66 41 chr9 82304991 82305288 -35557339 - L1MCa LINE L1 -5164 1777 1489 9136 29 0 12 chr9 82305439 82307307 -35555320 + L1PA3 LINE L1 4295 6151 -4 440 55 22 66 chr9 82307312 82307403 -35555224 + (TAAAA)n Simple_repeat Simple_repeat 2 88 0 518 234 8 0 chr9 82307441 82307565 -35555062 - L1MCa LINE L1 -5148 1275 1151 2073 232 23 36 chr9 82307566 82307746 -35554881 + MER76 LTR ERV 138 319 -369 1832 119 193 11 chr9 82307746 82308108 -35554519 - MSTA LTR MaLR 0 428 1 2073 232 23 36 chr9 82308108 82308482 -35554145 + MER76 LTR ERV 319 685 -3 21 0 0 0 chr9 82308789 82308810 -35553817 + AT_rich Low_complexity Low_complexity 1 21 0 1956 103 4 0 chr9 82308810 82309073 -35553554 - AluY SINE Alu -13 298 35 486 296 77 28 chr9 82309193 82309555 -35553072 - L1MCa LINE L1 -6026 397 18 1364 187 15 60 chr9 82309616 82309947 -35552680 - L1MA8 LINE L1 -44 6247 5932 2254 250 17 50 chr9 82311986 82312621 -35550006 + MLT1E2 LTR MaLR 5 618 -8 572 254 7 14 chr9 82312676 82312818 -35549809 - MLT1E2 LTR MaLR -475 151 11 1362 223 50 19 chr9 82313242 82313605 -35549022 - MLT1A2 LTR MaLR 0 374 1 351 0 0 0 chr9 82313920 82313959 -35548668 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 647 298 5 19 chr9 82316893 82317102 -35545525 - MIR SINE MIR -1 261 56 23 0 0 0 chr9 82317437 82317460 -35545167 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr9 82317866 82317890 -35544737 + AT_rich Low_complexity Low_complexity 1 24 0 489 110 0 0 chr9 82318557 82318630 -35543997 + (TA)n Simple_repeat Simple_repeat 2 74 0 261 279 31 47 chr9 82318890 82319019 -35543608 + MLT1H LTR MaLR 81 207 -342 345 358 60 15 chr9 82319640 82319841 -35542786 + L2 LINE L2 2838 3047 -225 23 0 0 0 chr9 82319991 82320014 -35542613 + AT_rich Low_complexity Low_complexity 1 23 0 452 299 86 28 chr9 82320739 82320965 -35541662 - MIR SINE MIR 0 262 30 4084 148 27 18 chr9 82321584 82322289 -35540338 - MER50 LTR ERV1 -23 711 1 3785 122 2 53 chr9 82322455 82323097 -35539530 + MER4B LTR ERV1 1 609 -1 23 68 0 0 chr9 82323302 82323346 -35539281 + AT_rich Low_complexity Low_complexity 1 44 0 377 332 40 56 chr9 82324228 82324400 -35538227 + HAL1b LINE L1 379 545 -803 2098 117 3 3 chr9 82324400 82324699 -35537928 - AluSx SINE Alu -13 299 1 377 332 40 56 chr9 82324699 82324830 -35537797 + HAL1b LINE L1 545 677 -671 267 162 14 27 chr9 82324979 82325053 -35537574 - L1MA7 LINE L1 -1 6290 6218 22 0 0 0 chr9 82325282 82325304 -35537323 + AT_rich Low_complexity Low_complexity 1 22 0 1677 164 0 52 chr9 82327041 82327351 -35535276 - AluJb SINE Alu -18 294 1 1108 295 54 49 chr9 82327773 82327847 -35534780 + L1ME LINE L1 31 103 -5967 2116 125 0 0 chr9 82327847 82328150 -35534477 + AluSq SINE Alu 1 303 -10 1108 295 54 49 chr9 82328150 82328710 -35533917 + L1ME LINE L1 103 666 -5404 4379 138 31 24 chr9 82328710 82328939 -35533688 - L1MA4A LINE L1 0 6303 6077 1996 137 3 0 chr9 82328939 82329238 -35533389 - AluSg SINE Alu -10 300 1 4379 138 31 24 chr9 82329238 82329846 -35532781 - L1MA4A LINE L1 -226 6077 5460 1108 295 54 49 chr9 82329846 82329933 -35532694 + L1ME LINE L1 666 751 -5319 361 282 77 6 chr9 82329910 82330080 -35532547 + L1M4 LINE L1 3877 4058 -2022 * 377 231 20 10 chr9 82330082 82330182 -35532445 - L1MD2 LINE L1 -65 6101 6032 1383 177 23 2 chr9 82330295 82330596 -35532031 + L1PA16 LINE L1 5816 6157 -9 471 174 56 76 chr9 82330605 82330749 -35531878 - Tigger6 DNA MER2_type -1368 229 89 815 329 69 18 chr9 82330978 82331370 -35531257 + LTR16C LTR ERVL 76 487 -4 2654 150 5 2 chr9 82332407 82332834 -35529793 - MSTA LTR MaLR 0 428 1 241 257 0 20 chr9 82334005 82334106 -35528521 + GA-rich Low_complexity Low_complexity 2 100 0 819 194 87 119 chr9 82334145 82334550 -35528077 + MLT1A1 LTR MaLR 1 383 -13 22 0 0 0 chr9 82334559 82334581 -35528046 + AT_rich Low_complexity Low_complexity 1 22 0 1142 246 185 100 chr9 82334745 82335346 -35527281 - MLT1E3 LTR MaLR 0 624 3 540 285 84 16 chr9 82335815 82336184 -35526443 + L1M4 LINE L1 2131 2524 -3622 2188 108 0 3 chr9 82337748 82338044 -35524583 + AluSq SINE Alu 1 295 -18 7390 35 5 0 chr9 82339645 82340887 -35521740 + L1PA4 LINE L1 4909 6154 -1 4121 85 45 0 chr9 82341044 82341623 -35521004 - LTR14B LTR ERVK 0 608 4 1688 118 59 0 chr9 82341908 82342179 -35520448 + L1PA11 LINE L1 5883 6169 -5 775 105 81 0 chr9 82343371 82343495 -35519132 + L1PA16 LINE L1 6033 6166 0 23 0 0 0 chr9 82344567 82344590 -35518037 + AT_rich Low_complexity Low_complexity 1 23 0 2122 121 0 0 chr9 82344955 82345245 -35517382 + AluSq SINE Alu 11 300 -13 180 0 0 0 chr9 82345613 82345633 -35516994 + (TA)n Simple_repeat Simple_repeat 2 21 0 228 213 0 0 chr9 82345744 82345805 -35516822 + (CA)n Simple_repeat Simple_repeat 2 62 0 27 0 0 0 chr9 82345994 82346021 -35516606 + AT_rich Low_complexity Low_complexity 1 27 0 248 224 0 17 chr9 82346721 82346779 -35515848 + MER112 DNA MER1_type 1 57 -203 5853 157 21 20 chr9 82346805 82347852 -35514775 + MER39B-int LTR ERV1 3643 4688 -1643 3689 170 54 64 chr9 82347852 82348815 -35513812 - LTR13 LTR ERVK -1 953 1 5853 157 21 20 chr9 82348815 82349063 -35513564 + MER39B-int LTR ERV1 4688 6183 -148 2247 167 15 8 chr9 82349125 82349726 -35512901 + MER39B LTR ERV1 5 652 -1 215 191 16 16 chr9 82349800 82349863 -35512764 + (TTATA)n Simple_repeat Simple_repeat 4 66 0 863 197 113 75 chr9 82350000 82350405 -35512222 - MLT2B1 LTR ERVL 0 414 1 345 171 0 12 chr9 82350810 82350892 -35511735 + MLT1D LTR MaLR 91 172 -333 280 136 0 0 chr9 82350981 82351025 -35511602 + MLT1E2 LTR MaLR 583 626 0 362 325 82 49 chr9 82351215 82351599 -35511028 - L1ME LINE L1 -408 5713 5318 227 319 77 11 chr9 82352031 82352122 -35510505 - L2 LINE L2 -2 3270 3174 2051 112 0 33 chr9 82352296 82352599 -35510028 + AluSx SINE Alu 4 296 -16 451 171 11 0 chr9 82352982 82353070 -35509557 + AluJ/FRAM SINE Alu 218 306 -6 394 341 8 0 chr9 82353162 82353291 -35509336 + MER94 DNA DNA 5 134 0 210 309 0 0 chr9 82354126 82354194 -35508433 + (CATATA)n Simple_repeat Simple_repeat 5 72 0 2387 181 40 19 chr9 82354625 82355199 -35507428 - LTR60 LTR ERV1 0 586 1 181 294 266 9 chr9 82355502 82355611 -35507016 - L2 LINE L2 -9 3263 3127 23 33 0 0 chr9 82355987 82356017 -35506610 + AT_rich Low_complexity Low_complexity 1 30 0 189 250 0 0 chr9 82356236 82356296 -35506331 + (TA)n Simple_repeat Simple_repeat 2 61 0 348 278 43 49 chr9 82356356 82356680 -35505947 - HAL1b LINE L1 -172 1176 855 1199 254 24 42 chr9 82356778 82357062 -35505565 - MLT1A2 LTR MaLR 0 374 97 1728 245 26 54 chr9 82357062 82357255 -35505372 - LTR27 LTR ERV1 -2 634 437 2157 93 48 0 chr9 82357255 82357546 -35505081 + AluSg SINE Alu 1 305 -5 1728 245 26 54 chr9 82357546 82358004 -35504623 - LTR27 LTR ERV1 -199 437 1 1199 254 24 42 chr9 82358004 82358097 -35504530 - MLT1A2 LTR MaLR -277 97 4 228 289 10 21 chr9 82358102 82358199 -35504428 - HAL1b LINE L1 -587 761 666 29 28 0 0 chr9 82358201 82358237 -35504390 + AT_rich Low_complexity Low_complexity 1 36 0 540 295 111 15 chr9 82358237 82358508 -35504119 - L1ME3 LINE L1 -11 6151 5855 317 211 0 0 chr9 82358647 82358704 -35503923 - L1ME3 LINE L1 -498 5672 5616 966 325 71 59 chr9 82358802 82359451 -35503176 + L1M3d LINE L1 1 657 -5234 250 259 0 0 chr9 82359576 82359630 -35502997 + L1 LINE L1 309 362 -5529 * 4688 200 29 63 chr9 82359628 82360984 -35501643 + L1 LINE L1 3932 5241 -743 1021 267 21 0 chr9 82361518 82361807 -35500820 - L1ME1 LINE L1 -107 6059 5768 392 210 108 113 chr9 82362013 82362199 -35500428 - MLT1H LTR MaLR -3 546 362 295 274 147 10 chr9 82362305 82362407 -35500220 - MLT1H LTR MaLR -426 123 8 234 133 17 50 chr9 82362536 82362596 -35500031 + (TG)n Simple_repeat Simple_repeat 1 58 0 785 226 55 58 chr9 82363242 82363551 -35499076 - MER33 DNA MER1_type -15 309 2 180 212 30 91 chr9 82364078 82364144 -35498483 + L2 LINE L2 3169 3230 -83 274 290 143 27 chr9 82364394 82364618 -35498009 - MIR SINE MIR -10 252 3 249 354 33 23 chr9 82365132 82365347 -35497280 - MIR SINE MIR -26 236 20 7398 38 0 0 chr9 82365353 82366595 -35496032 - L1PA4 LINE L1 -1 6154 4911 2118 50 0 0 chr9 82366595 82366856 -35495771 + L1P LINE L1 4599 4859 -1287 2194 113 0 0 chr9 82367009 82367302 -35495325 - AluSx SINE Alu -14 298 6 26 0 0 0 chr9 82367693 82367719 -35494908 + AT_rich Low_complexity Low_complexity 1 26 0 2126 122 14 0 chr9 82367854 82368150 -35494477 + AluSx SINE Alu 1 300 -12 640 282 66 50 chr9 82368295 82368615 -35494012 + MLT1H LTR MaLR 4 327 -215 636 181 47 0 chr9 82368636 82368763 -35493864 - FLAM_A SINE Alu 0 133 1 1617 153 60 4 chr9 82369130 82369411 -35493216 - AluJb SINE Alu -10 302 6 1460 166 8 8 chr9 82369455 82369720 -35492907 + L1MC1 LINE L1 6063 6327 -6 22 0 0 0 chr9 82369808 82369830 -35492797 + AT_rich Low_complexity Low_complexity 1 22 0 1603 205 0 0 chr9 82370663 82370956 -35491671 + AluJb SINE Alu 3 295 -17 571 309 119 5 chr9 82370981 82371191 -35491436 - MIR SINE MIR 0 262 29 216 0 0 0 chr9 82372292 82372316 -35490311 + (A)n Simple_repeat Simple_repeat 1 24 0 278 311 22 33 chr9 82372336 82372426 -35490201 - MIR SINE MIR -126 136 48 861 55 0 0 chr9 82372785 82372895 -35489732 - L1PA2 LINE L1 -2 6153 6044 212 303 92 18 chr9 82374089 82374198 -35488429 + L3 LINE CR1 1255 1371 -206 181 261 91 34 chr9 82374267 82374355 -35488272 - L2 LINE L2 -1 3271 3179 1422 165 66 26 chr9 82376601 82376896 -35485731 + AluJo SINE Alu 1 306 0 318 149 35 35 chr9 82377775 82377862 -35484765 + CT-rich Low_complexity Low_complexity 4 90 0 1433 169 65 28 chr9 82377867 82378157 -35484470 - AluJo SINE Alu -1 301 1 374 219 133 0 chr9 82378888 82378993 -35483634 + L1M4 LINE L1 2295 2413 -3733 22 35 0 0 chr9 82379531 82379560 -35483067 + AT_rich Low_complexity Low_complexity 1 29 0 269 214 101 11 chr9 82379742 82379831 -35482796 + MER67C LTR ERV1 1 97 -613 * 1140 166 8 75 chr9 82379815 82380036 -35482591 + MER67C LTR ERV1 464 698 -12 351 0 0 0 chr9 82380036 82380075 -35482552 + (TG)n Simple_repeat Simple_repeat 2 40 0 2182 119 0 0 chr9 82380082 82380377 -35482250 - AluSg SINE Alu -13 297 3 1140 166 8 75 chr9 82380377 82380412 -35482215 + MER67C LTR ERV1 704 710 0 3326 33 0 0 chr9 82381119 82381528 -35481099 + L1PA3 LINE L1 5769 6155 0 477 0 0 0 chr9 82382160 82382213 -35480414 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 2382 77 24 0 chr9 82382759 82383056 -35479571 + AluY SINE Alu 1 304 -7 185 156 0 22 chr9 82383259 82383304 -35479323 + CT-rich Low_complexity Low_complexity 3 46 0 23 33 0 0 chr9 82383433 82383463 -35479164 + AT_rich Low_complexity Low_complexity 1 30 0 2108 153 0 0 chr9 82385992 82386300 -35476327 + AluJb SINE Alu 3 310 -2 2675 159 53 15 chr9 82386454 82386927 -35475700 + LTR42 LTR ERVL 5 495 0 2266 206 39 53 chr9 82387417 82388054 -35474573 - L1MC2 LINE L1 -26 6318 5691 279 202 24 24 chr9 82388063 82388147 -35474480 + L1MCa LINE L1 1406 1489 -4937 3091 223 69 47 chr9 82388149 82390232 -35472395 - L1MCb LINE L1 -4304 2260 13 24 32 0 0 chr9 82391032 82391063 -35471564 + AT_rich Low_complexity Low_complexity 1 31 0 225 372 41 14 chr9 82391978 82392123 -35470504 - L2 LINE L2 -614 2700 2552 363 357 107 42 chr9 82392597 82393484 -35469143 - L2 LINE L2 -842 2472 1528 2244 316 43 32 chr9 82393774 82394244 -35468383 - HERV16 LTR ERVL -3907 1089 625 2265 71 0 59 chr9 82394244 82394567 -35468060 - AluY SINE Alu -7 304 1 2244 316 43 32 chr9 82394567 82395173 -35467454 - HERV16 LTR ERVL -4371 625 2 2335 95 0 3 chr9 82395613 82395918 -35466709 - AluSc SINE Alu -5 304 1 21 71 0 0 chr9 82396293 82396335 -35466292 + AT_rich Low_complexity Low_complexity 1 42 0 188 372 51 15 chr9 82398339 82398535 -35464092 + L2 LINE L2 2048 2250 -1064 943 200 77 109 chr9 82398826 82399201 -35463426 + MLT1A1 LTR MaLR 3 365 0 26 0 0 0 chr9 82400842 82400868 -35461759 + AT_rich Low_complexity Low_complexity 1 26 0 1492 220 19 75 chr9 82401919 82402332 -35460295 + MLT1B LTR MaLR 1 390 0 886 234 40 59 chr9 82402652 82402925 -35459702 + L1MB8 LINE L1 3 270 -6589 * 3421 256 77 25 chr9 82402922 82403564 -35459063 + L1MB8 LINE L1 4183 4790 -2167 180 0 0 0 chr9 82403564 82403584 -35459043 + (CA)n Simple_repeat Simple_repeat 1 20 0 * 243 0 0 0 chr9 82403583 82403610 -35459017 + (GA)n Simple_repeat Simple_repeat 2 28 0 3421 256 77 25 chr9 82403584 82404320 -35458307 + L1MB8 LINE L1 4790 5605 -1352 3324 211 75 10 chr9 82404354 82405334 -35457293 + L1MB8 LINE L1 5903 6946 -43 2377 83 0 7 chr9 82405856 82406157 -35456470 + AluY SINE Alu 1 299 -12 180 0 0 0 chr9 82406238 82406258 -35456369 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 342 327 19 0 chr9 82407316 82407423 -35455204 + L2 LINE L2 3201 3309 -4 245 286 12 36 chr9 82407413 82407497 -35455130 + MIR SINE MIR 54 135 -127 * 341 266 53 9 chr9 82407638 82407751 -35454876 + MIR SINE MIR 16 133 -75 960 198 0 0 chr9 82408199 82408361 -35454266 + AluJb SINE Alu 145 306 -6 275 275 100 76 chr9 82408407 82408803 -35453824 + L1M4 LINE L1 2399 2784 -3362 2212 104 0 22 chr9 82408803 82409120 -35453507 + AluSg SINE Alu 1 310 0 275 275 100 76 chr9 82409120 82409239 -35453388 + L1M4 LINE L1 2784 2899 -3247 761 103 88 7 chr9 82409239 82409375 -35453252 - L1MB3 LINE L1 -3 6180 6034 275 275 100 76 chr9 82409375 82409610 -35453017 + L1M4 LINE L1 2899 3179 -2967 1987 138 3 13 chr9 82409610 82409908 -35452719 + AluSx SINE Alu 5 299 -13 275 275 100 76 chr9 82409908 82410079 -35452548 + L1M4 LINE L1 3179 3344 -2802 745 161 0 17 chr9 82410112 82410278 -35452349 + FLAM_C SINE Alu 2 165 0 990 158 7 7 chr9 82410980 82411132 -35451495 + FRAM SINE Alu 2 153 -13 218 260 0 0 chr9 82411596 82411646 -35450981 - MIR SINE MIR -85 123 74 378 212 61 76 chr9 82413910 82414042 -35448585 + MIR SINE MIR 16 145 -63 276 264 11 44 chr9 82414619 82414710 -35447917 + MIR SINE MIR 13 100 -162 213 235 217 35 chr9 82415563 82415678 -35446949 - MIR3 SINE MIR -27 181 46 1406 120 60 0 chr9 82415678 82415894 -35446733 - AluSg/x SINE Alu -10 302 74 207 277 11 32 chr9 82418033 82418127 -35444500 + GA-rich Low_complexity Low_complexity 4 95 0 419 171 0 85 chr9 82418347 82418429 -35444198 + MER2 DNA MER2_type 270 344 -1 375 295 134 7 chr9 82418865 82419014 -35443613 + MIR3 SINE MIR 30 197 -11 185 279 73 15 chr9 82420012 82420080 -35442547 - MIR SINE MIR -81 181 110 212 143 24 24 chr9 82420212 82420254 -35442373 - MIR SINE MIR -58 150 109 530 270 16 0 chr9 82420398 82420524 -35442103 + MIR SINE MIR 18 145 -63 403 245 33 0 chr9 82421022 82421158 -35441469 + MER5B DNA MER1_type 7 157 -32 1252 116 0 0 chr9 82421158 82421322 -35441305 - AluSg/x SINE Alu -15 297 134 2026 110 4 0 chr9 82421322 82421595 -35441032 - AluSx SINE Alu -16 296 23 195 175 25 0 chr9 82421595 82421635 -35440992 + MER5A DNA MER1_type 149 189 0 573 227 41 17 chr9 82421732 82421904 -35440723 - MER5B DNA MER1_type 0 178 3 418 247 0 0 chr9 82423112 82423205 -35439422 - L1ME LINE L1 -491 5673 5581 355 138 125 0 chr9 82423223 82423303 -35439324 - L1MD2 LINE L1 -318 6041 5952 1679 292 53 27 chr9 82423303 82423903 -35438724 - L1MDb LINE L1 -5788 621 6 1806 264 70 32 chr9 82423903 82425286 -35437341 + L1ME2 LINE L1 4679 6115 -49 25 65 0 0 chr9 82425578 82425624 -35437003 + AT_rich Low_complexity Low_complexity 1 46 0 254 123 88 18 chr9 82426241 82426298 -35436329 - HSMAR1 DNA Mariner 0 1287 1227 1077 169 0 0 chr9 82426582 82426754 -35435873 + L1PA15 LINE L1 5986 6157 -8 533 295 62 14 chr9 82426812 82427022 -35435605 + MIR SINE MIR 6 225 -37 27 62 0 0 chr9 82427796 82427844 -35434783 + AT_rich Low_complexity Low_complexity 1 48 0 21 0 0 0 chr9 82428419 82428440 -35434187 + AT_rich Low_complexity Low_complexity 1 21 0 2677 229 97 25 chr9 82429595 82430419 -35432208 - L1MDb LINE L1 -3853 2227 1463 1766 142 61 10 chr9 82430419 82430715 -35431912 + AluSx SINE Alu 1 311 -1 2677 229 97 25 chr9 82430715 82431365 -35431262 - L1MDb LINE L1 -4617 1463 609 2375 77 0 0 chr9 82431382 82431680 -35430947 + AluY SINE Alu 1 298 -13 333 311 0 0 chr9 82431681 82431771 -35430856 + L1MC4 LINE L1 6614 6703 -1339 232 315 0 0 chr9 82431801 82431890 -35430737 + L1MC4 LINE L1 6614 6702 -1340 233 306 57 8 chr9 82431923 82432047 -35430580 - L1MDb LINE L1 -5477 593 464 208 216 0 0 chr9 82432428 82432465 -35430162 + polypurine Low_complexity Low_complexity 2 38 0 225 0 0 0 chr9 82433274 82433299 -35429328 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 4626 190 21 18 chr9 82433300 82433882 -35428745 - L1PB4 LINE L1 -2 6857 6278 2721 99 0 3 chr9 82433882 82434247 -35428380 + THE1B LTR MaLR 1 364 0 4626 190 21 18 chr9 82434247 82435057 -35427570 - L1PB4 LINE L1 -581 6278 5454 2182 170 34 30 chr9 82435057 82435606 -35427021 - MLT2A2 LTR ERVL 0 554 1 10096 232 24 18 chr9 82435606 82439618 -35423009 - L1PB4 LINE L1 -1391 5458 1336 342 284 0 0 chr9 82439598 82439686 -35422941 - L1PB4 LINE L1 -5280 1569 1482 * 257 405 13 19 chr9 82439711 82440022 -35422605 - L1PB4 LINE L1 -5301 1548 1240 720 332 65 38 chr9 82440744 82441193 -35421434 - L1PB4 LINE L1 -6379 471 11 50 71 0 0 chr9 82441278 82441377 -35421250 + AT_rich Low_complexity Low_complexity 1 99 0 29 28 0 0 chr9 82442119 82442155 -35420472 + AT_rich Low_complexity Low_complexity 1 36 0 276 338 40 27 chr9 82442619 82442767 -35419860 + L3 LINE CR1 342 491 -1086 528 219 25 17 chr9 82442772 82442891 -35419736 + FLAM_A SINE Alu 1 120 -13 3159 173 20 2 chr9 82443420 82444020 -35418607 - L1 LINE L1 -1239 4907 4297 4014 163 19 7 chr9 82444123 82445097 -35417530 + L1MA4 LINE L1 5000 5987 -313 426 203 40 0 chr9 82445102 82445250 -35417377 + (TA)n Simple_repeat Simple_repeat 2 155 0 249 344 0 0 chr9 82445260 82445350 -35417277 - L1MC4 LINE L1 -1339 6703 6614 246 284 0 0 chr9 82445350 82445431 -35417196 + (CATATA)n Simple_repeat Simple_repeat 4 84 0 233 314 23 0 chr9 82445442 82445528 -35417099 - L1MC4 LINE L1 -1339 6703 6616 353 293 38 0 chr9 82445530 82445663 -35416964 + (TA)n Simple_repeat Simple_repeat 2 139 0 330 204 29 0 chr9 82445675 82445778 -35416849 + (TA)n Simple_repeat Simple_repeat 1 106 0 299 25 25 0 chr9 82445831 82445871 -35416756 + (TG)n Simple_repeat Simple_repeat 2 42 0 251 361 38 25 chr9 82446225 82446383 -35416244 - MIR SINE MIR -102 160 1 23 68 0 0 chr9 82446427 82446471 -35416156 + AT_rich Low_complexity Low_complexity 1 44 0 246 265 103 52 chr9 82446489 82446625 -35416002 - MIR SINE MIR -44 218 76 352 428 35 23 chr9 82447027 82447284 -35415343 + L2 LINE L2 2977 3236 -36 243 0 0 0 chr9 82447449 82447476 -35415151 + (TA)n Simple_repeat Simple_repeat 1 27 0 2386 67 0 7 chr9 82447476 82447775 -35414852 - AluY SINE Alu -14 297 1 284 363 62 0 chr9 82448469 82448582 -35414045 - L2 LINE L2 0 3313 3194 519 279 20 45 chr9 82448591 82448792 -35413835 - MER45C DNA AcHobo 0 953 758 * 1014 321 85 74 chr9 82448784 82449240 -35413387 - MER45C DNA AcHobo -345 608 142 303 49 0 0 chr9 82449240 82449281 -35413346 + (CA)n Simple_repeat Simple_repeat 1 41 0 1014 321 85 74 chr9 82449281 82449422 -35413205 - MER45C DNA AcHobo -811 142 4 344 385 7 0 chr9 82449546 82449681 -35412946 - L2 LINE L2 -210 3062 2927 1980 109 3 14 chr9 82450059 82450343 -35412284 + AluSq SINE Alu 1 281 -32 203 56 56 0 chr9 82450343 82450379 -35412248 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 287 63 35 77 chr9 82450628 82450771 -35411856 + (TA)n Simple_repeat Simple_repeat 2 138 0 2434 43 0 10 chr9 82451095 82451396 -35411231 - AluY SINE Alu -13 298 1 25 51 0 0 chr9 82452023 82452062 -35410565 + AT_rich Low_complexity Low_complexity 1 39 0 214 294 28 18 chr9 82452367 82452476 -35410151 + MIR3 SINE MIR 69 178 -30 267 103 0 0 chr9 82452818 82452857 -35409770 + (CA)n Simple_repeat Simple_repeat 1 39 0 406 127 0 2 chr9 82454168 82454404 -35408223 + AluSx SINE Alu 23 293 -19 182 36 0 36 chr9 82454666 82454694 -35407933 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 660 295 149 23 chr9 82456124 82456466 -35406161 - L2 LINE L2 0 3313 2929 501 287 40 11 chr9 82456539 82456713 -35405914 + MER97b DNA MER1_type? 1 179 -874 883 326 23 16 chr9 82456768 82457078 -35405549 - L2 LINE L2 -475 2839 2528 5203 209 50 39 chr9 82457111 82459186 -35403441 - L1MB4 LINE L1 0 6180 4128 272 125 0 0 chr9 82459186 82459226 -35403401 - tRNA-Thr-ACT tRNA tRNA -37 40 1 5203 209 50 39 chr9 82459226 82459540 -35403087 - L1MB4 LINE L1 -2052 4128 3724 1827 172 65 6 chr9 82459540 82459894 -35402733 + THE1C LTR MaLR 1 375 0 5203 209 50 39 chr9 82459894 82459930 -35402697 - L1MB4 LINE L1 -2456 3724 3690 423 336 52 37 chr9 82459944 82460212 -35402415 - L2 LINE L2 -825 2489 2218 599 249 24 12 chr9 82460215 82460380 -35402247 + MER104 DNA Tc2 4 170 -10 806 323 115 10 chr9 82460390 82460780 -35401847 - L2 LINE L2 -1095 2219 1789 22 0 0 0 chr9 82461844 82461866 -35400761 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 82462923 82462944 -35399683 + AT_rich Low_complexity Low_complexity 1 21 0 410 275 124 39 chr9 82463600 82463778 -35398849 + MIR SINE MIR 43 235 -27 1984 108 56 17 chr9 82463833 82464121 -35398506 - AluSc SINE Alu -9 300 2 2095 97 42 0 chr9 82465012 82465300 -35397327 + AluSg SINE Alu 1 300 -10 214 211 14 42 chr9 82465484 82465555 -35397072 + (TA)n Simple_repeat Simple_repeat 2 70 0 29 47 0 0 chr9 82466887 82466930 -35395697 + AT_rich Low_complexity Low_complexity 1 43 0 405 0 0 0 chr9 82467248 82467293 -35395334 + (TA)n Simple_repeat Simple_repeat 1 45 0 27 0 0 0 chr9 82467497 82467524 -35395103 + AT_rich Low_complexity Low_complexity 1 27 0 200 295 66 0 chr9 82467855 82467916 -35394711 + L2 LINE L2 3203 3267 -5 363 240 149 19 chr9 82468751 82468959 -35393668 - L1ME4a LINE L1 -32 6089 5855 635 236 163 33 chr9 82468959 82469290 -35393337 - MLT1A2 LTR MaLR 0 374 1 217 184 20 0 chr9 82469758 82469807 -35392820 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 278 196 0 0 chr9 82469822 82469873 -35392754 + L1P LINE L1 4840 4890 -1256 209 414 14 14 chr9 82469921 82470066 -35392561 - MIR SINE MIR -114 148 4 295 100 0 0 chr9 82470255 82470295 -35392332 - LTR3b LTR ERVK 0 500 461 3597 105 6 4 chr9 82470296 82470792 -35391835 - LTR3b LTR ERVK -3 497 1 820 286 54 13 chr9 82471727 82472042 -35390585 + MER20B DNA MER1_type 6 333 -450 286 246 94 70 chr9 82472048 82472292 -35390335 + L1MC4a LINE L1 5799 6048 -1760 1346 268 62 5 chr9 82473396 82473817 -35388810 + L1MD3 LINE L1 7541 7985 -10 40709 64 11 0 chr9 82475227 82481306 -35381321 - L1PA5 LINE L1 -5 6149 3 4040 238 45 50 chr9 82481487 82482381 -35380246 - Charlie1a DNA MER1_type -1327 1434 548 2273 76 0 36 chr9 82482381 82482682 -35379945 + AluY SINE Alu 1 290 -21 4040 238 45 50 chr9 82482682 82483226 -35379401 - Charlie1a DNA MER1_type -2213 548 3 262 264 44 44 chr9 82483229 82483320 -35379307 - L2 LINE L2 -525 2789 2699 373 365 82 26 chr9 82483635 82483977 -35378650 - LTR33 LTR ERVL -149 372 12 2245 116 6 3 chr9 82484165 82484476 -35378151 + AluSx SINE Alu 1 312 0 22 0 0 0 chr9 82484481 82484503 -35378124 + AT_rich Low_complexity Low_complexity 1 22 0 400 145 121 0 chr9 82487153 82487236 -35375391 - L1MA4 LINE L1 -6 6294 6202 * 995 153 25 0 chr9 82487230 82487426 -35375201 + L1MA4 LINE L1 5956 6156 -144 234 91 0 0 chr9 82488921 82488954 -35373673 + (GAAA)n Simple_repeat Simple_repeat 2 34 0 359 21 21 0 chr9 82489321 82489369 -35373258 + (GA)n Simple_repeat Simple_repeat 2 50 0 463 50 91 0 chr9 82489735 82489856 -35372771 + (TA)n Simple_repeat Simple_repeat 1 132 0 606 282 117 34 chr9 82489856 82490292 -35372335 + HAL1 LINE L1 1468 1939 -568 629 235 167 0 chr9 82490758 82490920 -35371707 - MER3 DNA MER1_type 0 209 21 1609 194 3 15 chr9 82490927 82491268 -35371359 + L1MB3 LINE L1 5830 6166 -17 23 0 0 0 chr9 82491268 82491291 -35371336 + AT_rich Low_complexity Low_complexity 1 23 0 267 175 0 0 chr9 82492949 82493006 -35369621 + (TA)n Simple_repeat Simple_repeat 2 58 0 275 358 17 17 chr9 82493039 82493159 -35369468 - MIR SINE MIR -113 149 30 11372 31 8 1 chr9 82494994 82496390 -35366237 - L1P LINE L1 -1764 4382 2977 2647 43 0 0 chr9 82496390 82496709 -35365918 + L1PA4 LINE L1 5830 6152 -3 23 0 0 0 chr9 82497158 82497181 -35365446 + AT_rich Low_complexity Low_complexity 1 23 0 312 250 0 15 chr9 82497854 82497922 -35364705 - MER91 DNA MER1_type -81 115 49 1785 173 28 0 chr9 82497989 82498312 -35364315 + L1MC1 LINE L1 5995 6326 -7 29 60 0 0 chr9 82498499 82498549 -35364078 + AT_rich Low_complexity Low_complexity 1 50 0 346 340 112 14 chr9 82498823 82499067 -35363560 - L2 LINE L2 -299 3014 2745 2524 99 30 0 chr9 82499203 82499567 -35363060 + THE1C LTR MaLR 1 375 0 493 219 13 13 chr9 82499792 82499947 -35362680 + CT-rich Low_complexity Low_complexity 2 156 0 207 327 64 55 chr9 82500011 82500213 -35362414 - L2 LINE L2 -1289 2025 1822 331 313 103 52 chr9 82500490 82500781 -35361846 + L1MEd LINE L1 338 643 -5476 1744 269 46 31 chr9 82500973 82501608 -35361019 + L1MCb LINE L1 2 645 -5400 879 216 74 23 chr9 82501654 82501930 -35360697 - LTR12 LTR ERV1 -255 459 181 1531 234 48 18 chr9 82502054 82502333 -35360294 + L1MCb LINE L1 665 967 -5078 3420 108 14 8 chr9 82502333 82502843 -35359784 + LTR10D LTR ERV1 1 513 0 1531 234 48 18 chr9 82502843 82503062 -35359565 + L1MCb LINE L1 967 1178 -4867 1109 174 39 12 chr9 82503078 82503513 -35359114 - LTR54 LTR ERV1 0 510 1 2264 167 0 50 chr9 82503513 82503956 -35358671 - Tigger7 DNA MER2_type -10 2577 2157 407 183 14 0 chr9 82503967 82504038 -35358589 - Tigger7 DNA MER2_type -267 72 1 1583 252 74 63 chr9 82504041 82504666 -35357961 + L1MCb LINE L1 1183 1799 -4946 2383 137 3 8 chr9 82504666 82505032 -35357595 - THE1B LTR MaLR 0 364 1 9523 119 42 41 chr9 82505034 82506610 -35356017 - THE1B-int LTR MaLR -2 1578 2 2264 146 8 3 chr9 82506611 82506973 -35355654 - THE1B LTR MaLR 0 364 1 1583 252 74 63 chr9 82506973 82507374 -35355253 + L1MCb LINE L1 1798 2427 -4318 13981 198 80 15 chr9 82507391 82513846 -35348781 - L1PB1 LINE L1 -1 6866 6 765 260 45 31 chr9 82513879 82514349 -35348278 + L1MCb LINE L1 2435 2872 -3692 209 186 43 0 chr9 82514358 82514428 -35348199 + (TA)n Simple_repeat Simple_repeat 1 73 0 633 282 39 14 chr9 82514461 82514713 -35347914 - MLT1D LTR MaLR -37 468 225 969 165 24 6 chr9 82514721 82514891 -35347736 + MER49 LTR ERV1 5 177 -746 1375 233 26 21 chr9 82514892 82515231 -35347396 + MER4D LTR ERV1 563 903 0 658 223 9 96 chr9 82515231 82515460 -35347167 - MLT1D LTR MaLR -275 230 22 1023 315 97 57 chr9 82515473 82516413 -35346214 - MLT1D-int LTR MaLR 0 1371 395 * 1418 225 102 41 chr9 82516412 82516901 -35345726 - L1MCa LINE L1 -5901 525 7 967 92 8 0 chr9 82516901 82517032 -35345595 - AluY SINE Alu -179 132 1 2089 120 0 3 chr9 82517237 82517544 -35345083 - AluSx SINE Alu 0 306 1 1639 202 115 0 chr9 82518362 82518709 -35343918 + MER47B DNA MER2_type 1 387 -31 3027 98 5 0 chr9 82518776 82519204 -35343423 - L1PA10 LINE L1 -5 6163 5734 201 121 0 0 chr9 82519538 82519571 -35343056 + (TTG)n Simple_repeat Simple_repeat 2 34 0 341 257 29 9 chr9 82520149 82520254 -35342373 + CT-rich Low_complexity Low_complexity 2 108 0 368 277 23 40 chr9 82520646 82520823 -35341804 - L1ME LINE L1 -710 5454 5281 757 174 36 0 chr9 82523103 82523270 -35339357 + L1MA5 LINE L1 6128 6300 0 268 349 12 0 chr9 82523415 82523498 -35339129 + L2 LINE L2 3189 3272 0 482 301 111 27 chr9 82523761 82524023 -35338604 + LTR33 LTR ERVL 1 284 -237 1779 154 66 36 chr9 82524617 82524981 -35337646 + THE1C LTR MaLR 1 375 0 1203 130 0 0 chr9 82524983 82525175 -35337452 + THE1C-int LTR MaLR 3 194 -1386 3526 115 211 45 chr9 82525175 82526455 -35336172 + pTR5 LTR ERV1 746 2606 0 8072 134 20 46 chr9 82526455 82527885 -35334742 + THE1C-int LTR MaLR 188 1580 0 1534 171 63 30 chr9 82527885 82528248 -35334379 + THE1C LTR MaLR 1 375 0 195 276 66 0 chr9 82530088 82530164 -35332463 - MIR SINE MIR -64 198 118 198 0 0 0 chr9 82531563 82531585 -35331042 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 52 0 0 0 chr9 82531592 82531644 -35330983 + AT_rich Low_complexity Low_complexity 1 52 0 7457 34 6 0 chr9 82531644 82532808 -35329819 - L1PA3 LINE L1 -3 6152 4985 6123 33 0 0 chr9 82532807 82533543 -35329084 + L1PA3 LINE L1 4251 4986 -1160 * 2092 97 24 0 chr9 82533759 82534049 -35328578 + AluSx SINE Alu 1 297 -15 2069 119 36 0 chr9 82537127 82537429 -35325198 + AluSq SINE Alu 1 313 0 1008 180 41 68 chr9 82537816 82538251 -35324376 - MER51A LTR ERV1 0 634 1 821 203 124 58 chr9 82538452 82538694 -35323933 - MER66A LTR ERV1 0 478 221 385 224 9 81 chr9 82538853 82539019 -35323608 - MER66A LTR ERV1 -248 303 97 186 259 52 0 chr9 82540265 82540323 -35322304 - L2 LINE L2 -3 3310 3250 30 27 0 0 chr9 82540556 82540593 -35322034 + AT_rich Low_complexity Low_complexity 1 37 0 1907 156 150 3 chr9 82541330 82541703 -35320924 - MSTA LTR MaLR 0 428 1 356 381 21 10 chr9 82541752 82541946 -35320681 + MER117 DNA MER1_type 2 197 0 2811 181 75 5 chr9 82542318 82542891 -35319736 - Tigger3(Golem) DNA MER2_type 0 3028 2412 1684 197 3 7 chr9 82542891 82543190 -35319437 + AluJo SINE Alu 5 302 -10 2811 181 75 5 chr9 82543190 82543201 -35319426 - Tigger3(Golem) DNA MER2_type -616 2412 2403 302 260 13 0 chr9 82543201 82543278 -35319349 - L1MC4 LINE L1 -1351 6691 6614 346 311 102 51 chr9 82543443 82543874 -35318753 - MLT1H1 LTR MaLR -8 547 95 3671 128 52 59 chr9 82544052 82544815 -35317812 - L1MA7 LINE L1 -5 6286 5529 318 360 40 55 chr9 82546042 82546098 -35316529 - ERVL LTR ERVL -5071 693 638 612 144 101 0 chr9 82546098 82546237 -35316390 + L1MA4A LINE L1 6149 6301 -2 318 360 40 55 chr9 82546237 82546577 -35316050 - ERVL LTR ERVL -5126 638 303 599 335 73 16 chr9 82546626 82546874 -35315753 - MLT2E LTR ERVL -270 358 97 2092 108 10 3 chr9 82547064 82547352 -35315275 - AluSp SINE Alu -23 290 1 222 136 0 0 chr9 82547705 82547749 -35314878 + (TG)n Simple_repeat Simple_repeat 2 45 0 860 188 19 42 chr9 82548669 82548882 -35313745 - MLT1B LTR MaLR -180 210 3 215 307 94 8 chr9 82549026 82549153 -35313474 - MIR SINE MIR -74 188 51 182 331 77 59 chr9 82550132 82550301 -35312326 - MIR SINE MIR -13 249 78 262 307 80 4 chr9 82550380 82550519 -35312108 + MIR SINE MIR 92 235 -27 27 49 0 0 chr9 82550669 82550710 -35311917 + AT_rich Low_complexity Low_complexity 1 41 0 8556 102 35 22 chr9 82550969 82551604 -35311023 + HSMAR1 DNA Mariner 1 627 -660 911 82 16 93 chr9 82551604 82551786 -35310841 + L1PA10 LINE L1 5997 6164 -4 8556 102 35 22 chr9 82551786 82552420 -35310207 + HSMAR1 DNA Mariner 627 1286 -1 407 309 132 34 chr9 82553097 82553669 -35308958 + L1M4 LINE L1 3059 3684 -2462 1885 240 141 39 chr9 82553669 82554527 -35308100 + L1ME2 LINE L1 3028 4080 -2066 2334 88 0 0 chr9 82554527 82554834 -35307793 + AluSc SINE Alu 1 307 -2 1885 240 141 39 chr9 82554834 82555349 -35307278 + L1ME2 LINE L1 4080 4541 -1605 2283 87 0 3 chr9 82555362 82555662 -35306965 + AluSx SINE Alu 1 299 -13 3032 101 7 2 chr9 82555662 82556098 -35306529 + L1PA14 LINE L1 5289 5726 -435 3831 130 73 43 chr9 82556098 82556860 -35305767 - LTR1 LTR ERV1 0 785 1 2888 73 7 37 chr9 82556903 82557261 -35305366 + L1PA14 LINE L1 5723 6069 -92 2201 128 0 0 chr9 82557261 82557566 -35305061 + AluSx SINE Alu 3 307 -5 2888 73 7 37 chr9 82557566 82557617 -35305010 + L1PA14 LINE L1 6069 6120 -41 342 0 0 0 chr9 82557703 82557741 -35304886 + (TG)n Simple_repeat Simple_repeat 2 39 0 739 272 21 28 chr9 82557746 82558033 -35304594 + L1ME2 LINE L1 4620 4904 -1242 * 7065 36 1 0 chr9 82558029 82558871 -35303756 - L1PA3 LINE L1 0 6155 5313 1918 270 50 39 chr9 82558870 82559675 -35302952 + L1ME2 LINE L1 4888 5713 -451 * 930 177 0 6 chr9 82559675 82559839 -35302788 - FAM SINE Alu -9 166 4 1918 270 50 39 chr9 82559839 82560288 -35302339 + L1ME2 LINE L1 5713 6155 -9 468 286 45 26 chr9 82560319 82560588 -35302039 + L1MC4 LINE L1 7018 7291 -751 2285 179 62 28 chr9 82560618 82560726 -35301901 + MER44D DNA MER2_type 1 104 -2383 1702 149 16 39 chr9 82560726 82561034 -35301593 + AluJo SINE Alu 6 306 -6 2285 179 62 28 chr9 82561034 82561457 -35301170 + MER44D DNA MER2_type 104 605 0 1500 306 68 26 chr9 82561470 82562039 -35300588 + MLT1E LTR MaLR 1 593 0 1023 309 93 30 chr9 82562040 82562675 -35299952 + L1MC4 LINE L1 7363 8037 -5 191 316 33 116 chr9 82563741 82563956 -35298671 + MIR SINE MIR 41 237 -25 189 254 130 59 chr9 82563929 82564098 -35298529 - MIR SINE MIR -3 259 79 * 287 174 83 35 chr9 82564136 82564280 -35298347 + (TAAA)n Simple_repeat Simple_repeat 4 154 0 533 352 92 20 chr9 82564284 82564642 -35297985 - L2 LINE L2 -12 3301 2918 228 250 29 0 chr9 82564985 82565053 -35297574 - MIR SINE MIR -26 236 167 22 0 0 0 chr9 82565086 82565108 -35297519 + AT_rich Low_complexity Low_complexity 1 22 0 297 235 47 35 chr9 82565408 82565493 -35297134 - MIR SINE MIR -87 175 90 182 380 51 0 chr9 82566402 82566481 -35296146 - L2 LINE L2 0 3313 3231 180 302 105 23 chr9 82566880 82566966 -35295661 - L3b LINE CR1 -261 1322 1230 238 343 15 4 chr9 82567441 82567579 -35295048 - MIR SINE MIR -63 145 11 4820 167 48 28 chr9 82570158 82570640 -35291987 + L1MA7 LINE L1 4521 4992 -1299 1875 199 49 7 chr9 82570640 82571047 -35291580 + MSTB LTR MaLR 1 424 -2 4820 167 48 28 chr9 82571047 82572291 -35290336 + L1MA7 LINE L1 4992 6289 -2 180 0 0 0 chr9 82573711 82573731 -35288896 + (A)n Simple_repeat Simple_repeat 1 20 0 21 36 0 0 chr9 82574162 82574190 -35288437 + AT_rich Low_complexity Low_complexity 1 28 0 591 287 24 44 chr9 82574305 82574598 -35288029 + L1PA12 LINE L1 12 298 -7283 253 371 38 0 chr9 82575420 82575552 -35287075 + L1PA12 LINE L1 2183 2319 -5262 15708 206 21 34 chr9 82575573 82577019 -35285608 + L1PA15 LINE L1 1228 2692 -4124 2011 128 0 14 chr9 82577019 82577307 -35285320 + AluSx SINE Alu 11 294 -18 15708 206 21 34 chr9 82577307 82577587 -35285040 + L1PA15 LINE L1 2692 2974 -3842 2794 19 0 0 chr9 82577587 82577898 -35284729 + AluY SINE Alu 1 311 0 15708 206 21 34 chr9 82577898 82581800 -35280827 + L1PA15 LINE L1 2974 6810 -6 287 418 34 10 chr9 82582435 82582641 -35279986 + L2 LINE L2 2838 3048 -224 217 419 40 0 chr9 82582762 82582886 -35279741 + L2 LINE L2 3132 3260 -12 1590 114 61 42 chr9 82583775 82584038 -35278589 - AluSx SINE Alu -44 268 1 5368 238 69 39 chr9 82584038 82585857 -35276770 - L1M4c LINE L1 -4788 1858 5 2191 304 42 57 chr9 82585844 82586790 -35275837 - L1M4b LINE L1 -5916 943 12 * 230 383 37 28 chr9 82587029 82587136 -35275491 + L2 LINE L2 3125 3232 -40 272 379 43 17 chr9 82587222 82587457 -35275170 + MIR SINE MIR 7 247 -15 24 0 0 0 chr9 82587755 82587779 -35274848 + AT_rich Low_complexity Low_complexity 1 24 0 890 155 35 60 chr9 82588207 82588439 -35274188 - AluJo SINE Alu 0 312 87 462 169 0 0 chr9 82589930 82590019 -35272608 + GA-rich Low_complexity Low_complexity 2 90 0 2600 251 53 89 chr9 82590751 82591914 -35270713 + L1M4 LINE L1 15 1136 -5406 1039 43 0 36 chr9 82591914 82592052 -35270575 + AluY SINE Alu 172 304 -7 1852 260 61 12 chr9 82592055 82592805 -35269822 + L1M4 LINE L1 1134 1918 -4728 1020 211 119 18 chr9 82592784 82592904 -35269723 + L1MC3 LINE L1 7236 7342 -941 * 293 0 27 0 chr9 82592904 82592941 -35269686 + (CA)n Simple_repeat Simple_repeat 2 39 0 1020 211 119 18 chr9 82592941 82593147 -35269480 + L1MC3 LINE L1 7342 7595 -688 322 302 9 26 chr9 82593147 82593263 -35269364 + MLT1F1 LTR MaLR 35 148 -419 835 261 15 0 chr9 82593263 82593466 -35269161 + L1MC3 LINE L1 7712 7917 -366 481 191 45 0 chr9 82593464 82593574 -35269053 + L1MC3 LINE L1 7651 7765 -20 * 2904 260 67 22 chr9 82593584 82595080 -35267547 + L1M4 LINE L1 2062 3590 -3054 13612 193 51 55 chr9 82595094 82600656 -35261971 + L1PA13 LINE L1 2 5528 -1269 2320 132 26 0 chr9 82600656 82601034 -35261593 + L1PA13 LINE L1 6420 6809 -5 31 0 0 0 chr9 82601034 82601065 -35261562 + AT_rich Low_complexity Low_complexity 1 31 0 361 248 41 8 chr9 82601065 82601186 -35261441 + L1M4 LINE L1 3572 3696 -2948 980 240 87 8 chr9 82601187 82601554 -35261073 - L1M4 LINE L1 -1560 4586 4191 2015 216 82 0 chr9 82601731 82602204 -35260423 - MLT2B1 LTR ERVL -8 512 1 1229 67 0 18 chr9 82602982 82603172 -35259455 - AluY SINE Alu 0 311 125 2252 52 0 0 chr9 82603183 82603485 -35259142 - AluY SINE Alu 0 315 14 323 264 7 0 chr9 82605876 82606016 -35256611 + (TA)n Simple_repeat Simple_repeat 2 142 0 365 245 46 73 chr9 82606560 82606911 -35255716 - L2 LINE L2 0 3313 2827 1582 178 22 4 chr9 82607049 82607324 -35255303 - AluSq SINE Alu -25 288 9 307 185 11 54 chr9 82607346 82607438 -35255189 + L1MC4 LINE L1 6614 6701 -1341 189 214 0 0 chr9 82607459 82607501 -35255126 + (TATATG)n Simple_repeat Simple_repeat 1 42 0 509 303 139 31 chr9 82607672 82608537 -35254090 + L1ME LINE L1 2555 3512 -2634 351 252 44 15 chr9 82608555 82608690 -35253937 + L1ME LINE L1 5159 5297 -849 1428 248 77 26 chr9 82608730 82609234 -35253393 + L1ME2 LINE L1 5514 6043 -121 1907 119 7 40 chr9 82609462 82609764 -35252863 + AluSq SINE Alu 1 292 -21 277 271 107 57 chr9 82609902 82610079 -35252548 - MIR SINE MIR -51 211 26 304 308 154 19 chr9 82610278 82610434 -35252193 + MER5B DNA MER1_type 2 178 0 2102 121 0 0 chr9 82610665 82610963 -35251664 - AluSx SINE Alu -14 298 1 205 27 81 0 chr9 82611858 82611895 -35250732 + T-rich Low_complexity Low_complexity 1 40 0 903 143 0 0 chr9 82611909 82612049 -35250578 - AluJb SINE Alu -45 267 128 2383 80 6 0 chr9 82612049 82612360 -35250267 - AluSp SINE Alu 0 313 1 2049 137 0 3 chr9 82612443 82612735 -35249892 - AluSq SINE Alu -21 292 2 21 0 0 0 chr9 82613778 82613799 -35248828 + AT_rich Low_complexity Low_complexity 1 21 0 354 236 59 61 chr9 82614094 82614282 -35248345 + L1ME LINE L1 5477 5661 -503 208 158 26 0 chr9 82614360 82614398 -35248229 - MER5A DNA MER1_type -120 69 31 22 0 0 0 chr9 82614961 82614983 -35247644 + AT_rich Low_complexity Low_complexity 1 22 0 3321 203 43 26 chr9 82614996 82615700 -35246927 + L1MA4 LINE L1 1 716 -4612 1512 106 35 4 chr9 82615714 82615941 -35246686 + L1PA13 LINE L1 5866 6099 -64 12986 206 45 16 chr9 82616002 82621544 -35241083 + L1MA4 LINE L1 772 6477 -5 1750 142 118 9 chr9 82622126 82622464 -35240163 - THE1C LTR MaLR 0 375 1 9020 137 61 11 chr9 82622464 82623969 -35238658 - THE1C-int LTR MaLR 0 1580 1 1618 192 47 16 chr9 82623969 82624333 -35238294 - THE1C LTR MaLR 0 375 1 218 152 30 61 chr9 82625441 82625507 -35237120 + (TTATA)n Simple_repeat Simple_repeat 5 68 0 246 254 76 59 chr9 82626106 82626224 -35236403 + L1ME LINE L1 5542 5661 -460 24 0 0 0 chr9 82627171 82627195 -35235432 + AT_rich Low_complexity Low_complexity 1 24 0 897 158 0 0 chr9 82627770 82627909 -35234718 - FLAM_C SINE Alu -4 139 1 4785 170 85 36 chr9 82627976 82628948 -35233679 + LTR28 LTR ERV1 1 1020 0 485 239 36 89 chr9 82629092 82629278 -35233349 + MIR SINE MIR 36 210 -52 3540 151 12 25 chr9 82630766 82631697 -35230930 + L1MA5 LINE L1 4942 5854 -446 357 261 99 56 chr9 82632951 82633112 -35229515 - L1MC/D LINE L1 -2205 5603 5436 31 26 0 0 chr9 82633622 82633660 -35228967 + AT_rich Low_complexity Low_complexity 1 38 0 186 43 0 0 chr9 82633981 82634004 -35228623 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2280 47 0 0 chr9 82634004 82634281 -35228346 - L1PA4 LINE L1 -11 6144 5868 6519 31 0 0 chr9 82634381 82635164 -35227463 - L1P LINE L1 -923 5223 4441 781 323 107 10 chr9 82635993 82636405 -35226222 - LTR16B LTR ERVL -12 452 1 280 319 33 33 chr9 82636579 82636761 -35225866 + MLT1L LTR MaLR 155 336 -279 25 31 0 0 chr9 82636979 82637011 -35225616 + AT_rich Low_complexity Low_complexity 1 32 0 295 299 35 11 chr9 82637504 82637591 -35225036 + MER5A DNA MER1_type 30 118 -71 187 326 32 21 chr9 82637513 82637608 -35225019 - MER5A DNA MER1_type -29 160 65 * 24 32 0 0 chr9 82637626 82637657 -35224970 + AT_rich Low_complexity Low_complexity 1 31 0 542 278 137 13 chr9 82638708 82638935 -35223692 - MIR SINE MIR -7 255 1 1942 222 88 79 chr9 82639850 82640669 -35221958 + LTR1B LTR ERV1 1 826 0 230 373 102 0 chr9 82641552 82641670 -35220957 - L2 LINE L2 -4 3268 3139 2213 152 43 56 chr9 82642128 82642595 -35220032 + LOR1b LTR ERV1 1 461 0 214 300 50 17 chr9 82643213 82643273 -35219354 + L2 LINE L2 3207 3268 -4 245 351 48 48 chr9 82643365 82643414 -35219213 + L2 LINE L2 1287 1335 -1979 1213 175 4 13 chr9 82643414 82643642 -35218985 + L1PA15 LINE L1 5935 6160 -5 245 351 48 48 chr9 82643642 82643925 -35218702 + L2 LINE L2 1334 1619 -1695 349 282 180 43 chr9 82644723 82645184 -35217443 - L1ME4a LINE L1 -13 6108 5585 4033 153 108 49 chr9 82645292 82646358 -35216269 + Tigger3b DNA MER2_type 1 1231 0 2272 166 81 4 chr9 82646768 82647249 -35215378 - L1MA8 LINE L1 0 6291 5774 192 40 0 0 chr9 82647270 82647295 -35215332 + (TTG)n Simple_repeat Simple_repeat 3 27 0 43631 42 2 2 chr9 82647296 82653449 -35209178 - L1PA3 LINE L1 -3 6152 1 3970 160 30 24 chr9 82653452 82654601 -35208026 - L1MA8 LINE L1 -532 5759 4596 2450 251 116 14 chr9 82654650 82656114 -35206513 - L1M2 LINE L1 -4230 2877 1265 986 311 42 16 chr9 82656908 82657355 -35205272 - LTR16B LTR ERVL -4 460 2 438 288 27 55 chr9 82659431 82659577 -35203050 - L2 LINE L2 -15 3257 3116 184 259 121 0 chr9 82660121 82660179 -35202448 - MIR SINE MIR -72 136 71 37 0 0 0 chr9 82660361 82660398 -35202229 + AT_rich Low_complexity Low_complexity 1 37 0 671 150 3 54 chr9 82660670 82660986 -35201641 + (TA)n Simple_repeat Simple_repeat 1 300 0 308 156 0 62 chr9 82660988 82661052 -35201575 - L1MC4 LINE L1 -1339 6703 6644 413 275 66 50 chr9 82661183 82661365 -35201262 + MLT1J LTR MaLR 16 200 -311 21 0 0 0 chr9 82661439 82661460 -35201167 + AT_rich Low_complexity Low_complexity 1 21 0 1564 184 3 21 chr9 82661534 82661822 -35200805 + AluSx SINE Alu 1 283 -29 6941 125 6 4 chr9 82661822 82663006 -35199621 + L1MA1 LINE L1 5113 6302 0 32 0 0 0 chr9 82663006 82663038 -35199589 + AT_rich Low_complexity Low_complexity 1 32 0 3713 154 53 45 chr9 82663045 82663087 -35199540 + L1MA8 LINE L1 5474 5514 -777 2475 128 3 3 chr9 82663087 82663462 -35199165 - THE1C LTR MaLR 0 375 1 3713 154 53 45 chr9 82663462 82663598 -35199029 + L1MA8 LINE L1 5514 5647 -644 2508 158 9 23 chr9 82663598 82664036 -35198591 + Tigger2a DNA MER2_type 2 433 -1 3713 154 53 45 chr9 82664036 82664662 -35197965 + L1MA8 LINE L1 5647 6286 -5 23 54 0 0 chr9 82664888 82664925 -35197702 + AT_rich Low_complexity Low_complexity 1 37 0 34 0 0 0 chr9 82665138 82665172 -35197455 + AT_rich Low_complexity Low_complexity 1 34 0 2295 89 3 0 chr9 82665415 82665706 -35196921 + AluSp SINE Alu 7 298 -15 918 295 216 10 chr9 82666128 82666629 -35195998 - L2 LINE L2 -1715 1599 996 1514 213 22 25 chr9 82666933 82667299 -35195328 - MLT1A1 LTR MaLR 0 365 1 243 331 131 54 chr9 82667318 82667578 -35195049 + L2 LINE L2 3020 3299 -14 23 0 0 0 chr9 82667793 82667816 -35194811 + AT_rich Low_complexity Low_complexity 1 23 0 237 303 97 18 chr9 82668547 82668712 -35193915 + MIR SINE MIR 85 262 0 585 297 141 39 chr9 82668897 82669180 -35193447 - MLT1H LTR MaLR -107 442 131 25 31 0 0 chr9 82669324 82669356 -35193271 + AT_rich Low_complexity Low_complexity 1 32 0 236 417 66 0 chr9 82669870 82670021 -35192606 + MIR3 SINE MIR 33 193 -15 388 276 97 0 chr9 82670108 82670242 -35192385 + MIR SINE MIR 80 226 -36 498 336 117 16 chr9 82670294 82670737 -35191890 + LTR33 LTR ERVL 23 510 -11 2075 125 0 19 chr9 82672178 82672490 -35190137 + AluSg SINE Alu 3 308 -2 279 0 0 0 chr9 82672490 82672521 -35190106 + (TA)n Simple_repeat Simple_repeat 2 32 0 21 0 0 0 chr9 82672571 82672592 -35190035 + AT_rich Low_complexity Low_complexity 1 21 0 183 303 91 0 chr9 82673446 82673512 -35189115 + L2 LINE L2 3210 3281 -32 248 267 0 0 chr9 82673834 82673894 -35188733 + (TA)n Simple_repeat Simple_repeat 2 61 0 2108 110 0 10 chr9 82673930 82674251 -35188376 + AluSx SINE Alu 1 318 0 567 162 0 0 chr9 82674461 82674566 -35188061 + L1MA9 LINE L1 6207 6311 -1 229 200 0 50 chr9 82674757 82674817 -35187810 + L2 LINE L2 3257 3313 0 331 288 146 41 chr9 82674987 82675177 -35187450 + L1ME3A LINE L1 5579 5812 -358 288 77 0 0 chr9 82675177 82675216 -35187411 + (CA)n Simple_repeat Simple_repeat 2 40 0 331 288 146 41 chr9 82675216 82675320 -35187307 + L1ME3A LINE L1 5812 5904 -266 943 71 0 0 chr9 82675436 82675562 -35187065 + L1PA5 LINE L1 6029 6154 0 2321 181 109 86 chr9 82677088 82677895 -35184732 + LTR1B LTR ERV1 1 826 0 21 36 0 0 chr9 82679100 82679128 -35183499 + AT_rich Low_complexity Low_complexity 1 28 0 403 255 53 0 chr9 82680821 82680915 -35181712 - MER63 DNA MER1_type -312 750 26 2273 140 89 5 chr9 82681933 82682326 -35180301 - MSTB LTR MaLR 0 426 1 451 261 106 19 chr9 82682854 82682979 -35179648 - L2 LINE L2 0 3313 3170 216 97 0 0 chr9 82682979 82683010 -35179617 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 451 261 106 19 chr9 82683010 82683045 -35179582 - L2 LINE L2 -143 3170 3139 2160 222 74 36 chr9 82683366 82683933 -35178694 - MLT1E LTR MaLR 0 593 3 227 211 58 0 chr9 82683933 82683985 -35178642 - MIR SINE MIR -62 200 146 443 305 24 30 chr9 82684395 82684562 -35178065 + L2 LINE L2 3142 3307 -6 26 50 0 0 chr9 82684574 82684614 -35178013 + AT_rich Low_complexity Low_complexity 1 40 0 2275 66 0 3 chr9 82685507 82685795 -35176832 + AluY SINE Alu 1 287 -24 375 21 0 0 chr9 82685795 82685818 -35176809 + AluSg SINE Alu 1 311 0 21 36 0 0 chr9 82686042 82686070 -35176557 + AT_rich Low_complexity Low_complexity 1 28 0 197 88 281 35 chr9 82686268 82686325 -35176302 - MIR SINE MIR -49 213 143 2249 96 0 13 chr9 82686470 82686783 -35175844 - AluSg SINE Alu -1 309 1 440 335 29 6 chr9 82687780 82687950 -35174677 - L2 LINE L2 0 3313 3140 239 254 0 0 chr9 82688896 82688959 -35173668 + L1ME3 LINE L1 5880 5942 -228 447 286 31 6 chr9 82688990 82689151 -35173476 + L1ME3 LINE L1 5996 6160 -2 224 176 0 39 chr9 82689163 82689214 -35173413 + GA-rich Low_complexity Low_complexity 4 52 0 244 261 0 14 chr9 82689306 82689375 -35173252 + MLT1K LTR MaLR 513 580 -8 34 42 0 0 chr9 82689426 82689474 -35173153 + AT_rich Low_complexity Low_complexity 1 48 0 33 71 0 0 chr9 82689736 82689792 -35172835 + AT_rich Low_complexity Low_complexity 1 56 0 1247 228 62 16 chr9 82689883 82690318 -35172309 + L1M4 LINE L1 4408 4862 -1284 2899 26 0 0 chr9 82691486 82691830 -35170797 - L1P LINE L1 -1545 4601 4258 7575 29 1 0 chr9 82691830 82692935 -35169692 + L1PA4 LINE L1 5050 6155 0 2188 120 0 0 chr9 82694670 82694970 -35167657 - AluSx SINE Alu -12 300 1 761 284 61 4 chr9 82695751 82695980 -35166647 + MIR SINE MIR 20 261 -1 1245 218 33 22 chr9 82696594 82697774 -35164853 + L1MB1 LINE L1 2634 6017 -151 1560 244 23 3 chr9 82697774 82698118 -35164509 - MLT1A1 LTR MaLR 0 365 15 1601 166 86 20 chr9 82698118 82698468 -35164159 + THE1C LTR MaLR 1 373 -2 499 159 9 28 chr9 82698490 82698597 -35164030 + L1MB1 LINE L1 6014 6118 -50 1642 148 164 32 chr9 82698670 82699048 -35163579 + MSTA LTR MaLR 1 428 0 9419 140 6 35 chr9 82699050 82700676 -35161951 + MSTA-int LTR MaLR 3 1580 0 1607 184 152 11 chr9 82700676 82701051 -35161576 + MSTA LTR MaLR 1 428 0 243 246 79 56 chr9 82701666 82701792 -35160835 - MLT1I LTR MaLR -6 403 275 421 288 25 23 chr9 82701855 82702003 -35160624 - MLT1I LTR MaLR -269 140 3 204 135 0 0 chr9 82703053 82703090 -35159537 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 1556 182 19 29 chr9 82703137 82703450 -35159177 + MER44D DNA MER2_type 81 445 -160 * 3357 216 10 26 chr9 82703447 82704140 -35158487 - Tigger7 DNA MER2_type -1803 684 3 432 228 9 0 chr9 82704143 82704257 -35158370 + L1M4 LINE L1 3340 3454 -2692 1307 237 21 28 chr9 82704271 82704659 -35157968 + L1M4 LINE L1 3554 3938 -2208 584 260 0 52 chr9 82704821 82704994 -35157633 + L1PA13 LINE L1 4 167 -6620 23 0 0 0 chr9 82705109 82705132 -35157495 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr9 82705235 82705257 -35157370 + AT_rich Low_complexity Low_complexity 1 22 0 36 87 0 0 chr9 82705295 82705387 -35157240 + AT_rich Low_complexity Low_complexity 1 92 0 269 0 0 0 chr9 82705628 82705667 -35156960 - L1PA4 LINE L1 0 6155 6117 21 36 0 0 chr9 82706468 82706496 -35156131 + AT_rich Low_complexity Low_complexity 1 28 0 206 341 134 0 chr9 82706824 82706906 -35155721 + L2 LINE L2 3179 3271 -42 383 196 42 24 chr9 82707074 82707242 -35155385 + (TA)n Simple_repeat Simple_repeat 2 172 0 4347 179 40 14 chr9 82707291 82708177 -35154450 + L1MA8 LINE L1 5371 6279 -12 1107 323 117 6 chr9 82708206 82708677 -35153950 - L2 LINE L2 -358 2956 2434 219 69 0 0 chr9 82709581 82709610 -35153017 + (CA)n Simple_repeat Simple_repeat 2 30 0 22 56 0 0 chr9 82709953 82709989 -35152638 + AT_rich Low_complexity Low_complexity 1 36 0 275 180 0 0 chr9 82710287 82710348 -35152279 + L1MC4 LINE L1 6648 6708 -1334 26 64 0 0 chr9 82710399 82710446 -35152181 + AT_rich Low_complexity Low_complexity 1 47 0 23 33 0 0 chr9 82711676 82711706 -35150921 + AT_rich Low_complexity Low_complexity 1 30 0 267 217 0 0 chr9 82711739 82711799 -35150828 + (CA)n Simple_repeat Simple_repeat 1 60 0 224 197 0 16 chr9 82711784 82711845 -35150782 + (TA)n Simple_repeat Simple_repeat 2 61 0 * 698 298 17 30 chr9 82712032 82712267 -35150360 - MIR SINE MIR -1 261 30 35 54 0 0 chr9 82712284 82712340 -35150287 + AT_rich Low_complexity Low_complexity 1 56 0 22 35 0 0 chr9 82712792 82712821 -35149806 + AT_rich Low_complexity Low_complexity 1 29 0 2159 105 0 0 chr9 82713671 82713956 -35148671 + AluSx SINE Alu 14 298 -14 581 229 21 21 chr9 82713960 82714104 -35148523 - MER5A DNA MER1_type -45 144 1 264 271 62 0 chr9 82715530 82715626 -35147001 - L1MC4 LINE L1 -2 8040 7939 1455 269 67 13 chr9 82715818 82716282 -35146345 - L1MC4 LINE L1 -388 7654 7166 1454 232 19 15 chr9 82716287 82716589 -35146038 - L1MC4 LINE L1 -890 7003 6631 410 96 14 0 chr9 82716589 82716662 -35145965 + (TA)n Simple_repeat Simple_repeat 1 74 0 1454 232 19 15 chr9 82716662 82716759 -35145868 - L1MC4 LINE L1 -1262 6631 6536 687 313 62 9 chr9 82717980 82718428 -35144199 - L1MEc LINE L1 -4007 3115 2644 266 281 47 0 chr9 82718553 82718617 -35144010 - L1MEc LINE L1 -5132 1291 1225 1969 179 39 73 chr9 82719187 82719707 -35142920 - MLT1D LTR MaLR -2 503 2 200 35 35 0 chr9 82720384 82720413 -35142214 + (TA)n Simple_repeat Simple_repeat 2 31 0 253 336 99 30 chr9 82720479 82720610 -35142017 - L1MEc LINE L1 -5989 434 295 1700 138 4 4 chr9 82721946 82722199 -35140428 + AluSx SINE Alu 27 279 -33 582 54 54 0 chr9 82722200 82722293 -35140334 + GA-rich Low_complexity Low_complexity 3 100 0 276 259 378 0 chr9 82723159 82723294 -35139333 - MER5A DNA MER1_type 0 189 4 1775 145 148 19 chr9 82723420 82723799 -35138828 + MSTA LTR MaLR 1 428 0 27 0 0 0 chr9 82724831 82724858 -35137769 + AT_rich Low_complexity Low_complexity 1 27 0 1777 185 116 69 chr9 82725463 82725955 -35136672 - MLT2B2 LTR ERVL 0 515 1 370 320 58 26 chr9 82726137 82726293 -35136334 + L2 LINE L2 2924 3084 -188 327 301 57 24 chr9 82726351 82726474 -35136153 + MIR SINE MIR 25 151 -111 225 235 314 0 chr9 82726635 82726737 -35135890 + L2 LINE L2 3138 3271 -1 786 186 198 12 chr9 82728352 82728604 -35134023 + MER33 DNA MER1_type 4 302 -22 2382 93 0 0 chr9 82729002 82729302 -35133325 + AluSg SINE Alu 1 300 -10 438 165 0 0 chr9 82730231 82730310 -35132317 + CT-rich Low_complexity Low_complexity 1 79 0 1935 147 7 0 chr9 82730310 82730602 -35132025 - AluSx SINE Alu -15 297 4 307 332 95 21 chr9 82731092 82731282 -35131345 - MIR SINE MIR -44 218 15 466 151 139 0 chr9 82731437 82731523 -35131104 - 5S rRNA rRNA -19 102 5 290 268 0 0 chr9 82732034 82732090 -35130537 - MER2 DNA MER2_type 0 345 290 27 49 0 0 chr9 82732129 82732170 -35130457 + AT_rich Low_complexity Low_complexity 1 41 0 2155 101 0 17 chr9 82732201 82732497 -35130130 + AluSp SINE Alu 6 296 -17 828 168 126 0 chr9 82732502 82732669 -35129958 - MER2 DNA MER2_type -152 193 6 318 253 11 11 chr9 82732671 82732762 -35129865 + (TA)n Simple_repeat Simple_repeat 2 92 0 41 36 0 0 chr9 82733517 82733572 -35129055 + AT_rich Low_complexity Low_complexity 1 55 0 534 218 135 24 chr9 82734233 82734403 -35128224 + MER5A DNA MER1_type 1 189 0 2290 105 0 6 chr9 82735452 82735767 -35126860 - AluSq SINE Alu 0 313 1 24 0 0 0 chr9 82737236 82737260 -35125367 + AT_rich Low_complexity Low_complexity 1 24 0 306 0 0 0 chr9 82737874 82737908 -35124719 + (CA)n Simple_repeat Simple_repeat 2 35 0 2308 93 0 3 chr9 82738022 82738322 -35124305 - AluSc SINE Alu -10 299 1 2249 105 3 0 chr9 82738333 82738627 -35124000 - AluSp SINE Alu -18 295 1 609 191 15 15 chr9 82738671 82738807 -35123820 + L1ME3A LINE L1 6026 6161 -9 1832 192 74 20 chr9 82739009 82739399 -35123228 - MLT2D LTR ERVL -3 411 1 294 275 138 19 chr9 82741481 82741641 -35120986 + MIR SINE MIR 75 253 -9 193 171 73 0 chr9 82741611 82741652 -35120975 + L2 LINE L2 3270 3313 0 * 1185 307 78 12 chr9 82742504 82742990 -35119637 - LTR33 LTR ERVL 0 521 4 1786 176 46 3 chr9 82743319 82743665 -35118962 - MER46B DNA MER2_type 0 236 1 620 334 107 16 chr9 82743667 82744050 -35118577 - LTR33 LTR ERVL -64 457 40 24 32 0 0 chr9 82744392 82744423 -35118204 + AT_rich Low_complexity Low_complexity 1 31 0 560 151 11 0 chr9 82745425 82745518 -35117109 + AluJb SINE Alu 205 298 -14 4640 182 30 4 chr9 82745522 82746624 -35116003 + L1PA16 LINE L1 5024 6150 -16 2633 151 2 54 chr9 82746690 82747168 -35115459 - MER49 LTR ERV1 -464 459 7 1097 279 57 22 chr9 82747460 82748052 -35114575 + L1M4 LINE L1 4521 5133 -1013 242 203 85 0 chr9 82748060 82748119 -35114508 + L1M4 LINE L1 5195 5258 -888 335 143 286 57 chr9 82748126 82748231 -35114396 + MLT2C1 LTR ERVL 269 397 0 2221 203 110 73 chr9 82748233 82748853 -35113774 - MLT1E1 LTR MaLR -3 651 9 1204 249 36 122 chr9 82748885 82749601 -35113026 - MLT1E1-int LTR MaLR -25 1346 692 1183 254 52 10 chr9 82749802 82750273 -35112354 - MLT1E1-int LTR MaLR -760 611 2 1262 240 54 18 chr9 82750274 82750849 -35111778 - MLT1E1 LTR MaLR 0 654 1 1231 166 17 17 chr9 82751022 82751257 -35111370 + L1MA9 LINE L1 5914 6148 -164 3498 20 0 0 chr9 82752032 82752431 -35110196 - L1PA3 LINE L1 -209 5946 5548 1754 19 0 5 chr9 82752431 82752640 -35109987 + L1PA3 LINE L1 5947 6155 0 5212 185 19 8 chr9 82752654 82754671 -35107956 - L1PA16 LINE L1 -9 6157 4125 343 226 38 0 chr9 82754716 82754849 -35107778 + (TA)n Simple_repeat Simple_repeat 2 139 0 1462 299 87 24 chr9 82755585 82756136 -35106491 + MLT1E LTR MaLR 1 586 -7 2065 108 34 6 chr9 82756197 82756709 -35105918 + L1P4 LINE L1 5051 5576 -592 869 209 23 27 chr9 82756784 82756992 -35105635 + LTR41 LTR ERVL 1 234 -561 1782 147 20 7 chr9 82757464 82757812 -35104815 - MER4A LTR ERV1 0 664 254 324 138 46 15 chr9 82757806 82757871 -35104756 - MER4A LTR ERV1 -597 67 1 * 488 215 24 101 chr9 82757871 82757998 -35104629 + LTR41 LTR ERVL 591 718 -77 1652 99 0 5 chr9 82757998 82758219 -35104408 - AluSq SINE Alu -7 306 87 488 215 24 101 chr9 82758219 82758292 -35104335 + LTR41 LTR ERVL 718 795 0 288 0 0 0 chr9 82758299 82758331 -35104296 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 11149 28 1 0 chr9 82758334 82760421 -35102206 - L1PA3 LINE L1 -3 6152 4066 21 0 0 0 chr9 82760488 82760509 -35102118 + AT_rich Low_complexity Low_complexity 1 21 0 3415 120 26 75 chr9 82760546 82761171 -35101456 - LTR26 LTR ERV1 0 603 10 435 339 25 4 chr9 82761901 82762109 -35100518 - MIR SINE MIR -44 218 2 305 273 66 161 chr9 82762186 82762381 -35100246 - L3 LINE CR1 -45 1532 1371 279 0 0 0 chr9 82762381 82762412 -35100215 + (GA)n Simple_repeat Simple_repeat 2 32 0 305 273 66 161 chr9 82762412 82762502 -35100125 - L3 LINE CR1 -206 1371 1274 566 100 0 0 chr9 82762541 82762621 -35100006 - MADE1 DNA Mariner 0 80 1 1565 188 40 90 chr9 82762621 82763095 -35099532 - MER31B LTR ERV1 -16 450 1 4264 223 48 51 chr9 82763095 82764411 -35098216 - MER31B-int LTR ERV1 -20 4916 3605 1265 265 28 18 chr9 82764409 82764805 -35097822 - MER31B-int LTR ERV1 -1681 3255 2856 * 1485 231 70 73 chr9 82765071 82765458 -35097169 - MER31B-int LTR ERV1 -2464 2472 2085 2542 42 7 3 chr9 82765458 82765767 -35096860 - AluY SINE Alu 0 311 2 1485 231 70 73 chr9 82765767 82766224 -35096403 - MER31B-int LTR ERV1 -2851 2085 1631 4243 221 70 71 chr9 82766228 82767673 -35094954 - MER31B-int LTR ERV1 -3483 1453 10 1915 177 33 64 chr9 82767710 82768191 -35094436 - MER31B LTR ERV1 0 466 1 2678 94 6 0 chr9 82769668 82770028 -35092599 + THE1B LTR MaLR 1 362 -2 26 0 0 0 chr9 82770178 82770204 -35092423 + AT_rich Low_complexity Low_complexity 1 26 0 670 328 107 40 chr9 82770224 82770821 -35091806 + L2 LINE L2 2212 2848 -466 1030 213 119 105 chr9 82770823 82771176 -35091451 + MLT2B1 LTR ERVL 1 358 -56 396 359 68 28 chr9 82771577 82771828 -35090799 - MIR SINE MIR -1 261 1 269 341 58 17 chr9 82772767 82772940 -35089687 + L2 LINE L2 3129 3308 -5 255 387 54 40 chr9 82775006 82775228 -35087399 - L2 LINE L2 -182 3090 2866 191 317 32 65 chr9 82775642 82775765 -35086862 - MIR SINE MIR -44 218 100 440 309 60 39 chr9 82775833 82775873 -35086754 + L3 LINE CR1 631 669 -908 3026 182 46 21 chr9 82775873 82776499 -35086128 + MER73 LTR ERVL 3 644 0 440 309 60 39 chr9 82776499 82776691 -35085936 + L3 LINE CR1 669 868 -709 268 278 42 0 chr9 82776748 82776820 -35085807 + L2 LINE L2 3191 3265 -7 674 224 0 0 chr9 82778820 82778936 -35083691 - FLAM_A SINE Alu -16 117 2 1882 135 0 7 chr9 82778976 82779250 -35083377 + AluSx SINE Alu 41 312 0 206 53 79 0 chr9 82781333 82781371 -35081256 + T-rich Low_complexity Low_complexity 2 42 0 7230 6 0 0 chr9 82781411 82782221 -35080406 - L1HS LINE L1 0 6155 5346 2084 144 31 25 chr9 82782915 82783269 -35079358 - THE1B LTR MaLR 0 364 9 330 305 11 0 chr9 82784136 82784231 -35078396 + MIR SINE MIR 53 148 -114 198 293 95 9 chr9 82785045 82785161 -35077466 - MIR SINE MIR 0 262 137 2069 120 0 17 chr9 82785691 82785992 -35076635 + AluSx SINE Alu 1 296 -16 240 35 0 0 chr9 82786513 82786542 -35076085 + (A)n Simple_repeat Simple_repeat 1 29 0 1377 179 32 8 chr9 82787058 82787304 -35075323 + AluSx SINE Alu 37 288 -24 258 188 100 25 chr9 82787420 82787500 -35075127 - L1ME LINE L1 -654 5467 5382 23 0 0 0 chr9 82787603 82787626 -35075001 + AT_rich Low_complexity Low_complexity 1 23 0 384 298 44 0 chr9 82787887 82788001 -35074626 + MER94 DNA DNA 1 119 -15 501 286 16 0 chr9 82788741 82788867 -35073760 + MIR SINE MIR 33 160 -102 293 245 123 111 chr9 82788961 82789214 -35073413 - MLT1H LTR MaLR -199 350 95 204 385 173 36 chr9 82791195 82791473 -35071154 + L2 LINE L2 2957 3272 0 360 343 12 18 chr9 82791670 82791839 -35070788 + MIR SINE MIR 2 169 -93 14947 30 1 1 chr9 82792304 82794859 -35067768 - L1PA3 LINE L1 0 6155 3592 6677 29 1 0 chr9 82794859 82795684 -35066943 + L1PA3 LINE L1 2766 3591 -2555 263 295 0 0 chr9 82795930 82795991 -35066636 + polypyrimidine Low_complexity Low_complexity 2 62 0 2791 68 73 26 chr9 82796008 82796389 -35066238 + MLT2A1 LTR ERVL 1 405 -39 450 65 0 0 chr9 82796389 82796451 -35066176 + (TA)n Simple_repeat Simple_repeat 2 63 0 2791 68 73 26 chr9 82796451 82796493 -35066134 + MLT2A1 LTR ERVL 405 444 0 361 310 132 51 chr9 82796614 82796811 -35065816 + MIR SINE MIR 49 261 -1 295 216 68 14 chr9 82796847 82796921 -35065706 - MER63 DNA MER1_type -4 1058 981 308 242 88 0 chr9 82796923 82797014 -35065613 - MER63 DNA MER1_type -85 751 27 668 167 0 18 chr9 82797227 82797341 -35065286 + FLAM_C SINE Alu 14 125 -18 427 119 0 0 chr9 82798495 82798554 -35064073 - THE1A LTR MaLR 0 355 297 9215 105 5 10 chr9 82798557 82799843 -35062784 - THE1A-int LTR MaLR -301 1279 1 2137 122 11 20 chr9 82799847 82800201 -35062426 - THE1A LTR MaLR -4 351 1 328 239 60 67 chr9 82800827 82800961 -35061666 + L2 LINE L2 3163 3295 -18 612 311 36 52 chr9 82801080 82801328 -35061299 - MIR SINE MIR 0 262 19 232 344 59 22 chr9 82802101 82802424 -35060203 + HAL1b LINE L1 373 707 -641 331 332 57 33 chr9 82802705 82803072 -35059555 + L1M4 LINE L1 4711 5086 -1060 311 295 156 6 chr9 82803143 82803316 -35059311 + L1M4 LINE L1 5205 5403 -743 224 176 0 29 chr9 82803620 82803688 -35058939 + (TTAA)n Simple_repeat Simple_repeat 1 66 0 229 157 71 86 chr9 82803865 82803935 -35058692 - MER3 DNA MER1_type 0 209 141 1207 240 53 50 chr9 82803966 82804459 -35058168 + MER39 LTR ERV1 1 707 0 373 229 0 0 chr9 82804477 82804547 -35058080 - MER3 DNA MER1_type -139 70 1 280 366 98 8 chr9 82804649 82804772 -35057855 + L2 LINE L2 3123 3256 -16 1600 195 61 43 chr9 82804888 82805098 -35057529 + LTR2 LTR ERV1 1 206 -243 366 23 0 0 chr9 82805098 82805141 -35057486 + (TTCTG)n Simple_repeat Simple_repeat 1 43 0 1600 195 61 43 chr9 82805141 82805371 -35057256 + LTR2 LTR ERV1 206 449 0 35 54 0 0 chr9 82805438 82805494 -35057133 + AT_rich Low_complexity Low_complexity 1 56 0 5364 131 22 4 chr9 82806689 82807504 -35055123 - HSMAR2 DNA Mariner -5 1297 468 2848 147 19 6 chr9 82808133 82808617 -35054010 - HSMAR2 DNA Mariner -811 491 2 252 0 0 0 chr9 82808617 82808645 -35053982 + (TG)n Simple_repeat Simple_repeat 2 29 0 245 150 25 0 chr9 82808884 82808924 -35053703 + MIR SINE MIR 212 252 -10 927 219 30 43 chr9 82809025 82809378 -35053249 - MER31B LTR ERV1 0 466 1 1344 201 73 39 chr9 82809868 82810226 -35052401 + MLT1A2 LTR MaLR 5 374 0 549 194 0 0 chr9 82810998 82811096 -35051531 - AluJ/FLAM SINE Alu -214 98 1 244 257 150 14 chr9 82811564 82811704 -35050923 - MLT1H LTR MaLR -12 537 379 234 167 0 0 chr9 82811896 82811932 -35050695 + L1MC4 LINE L1 7431 7466 -576 717 236 7 0 chr9 82811945 82812093 -35050534 - FRAM SINE Alu -27 149 1 238 322 23 0 chr9 82812094 82812181 -35050446 - MLT1E LTR MaLR -467 126 38 21 36 0 0 chr9 82813037 82813065 -35049562 + AT_rich Low_complexity Low_complexity 1 28 0 12046 226 55 24 chr9 82813592 82813947 -35048680 - L1PB4 LINE L1 0 6858 6515 243 0 0 0 chr9 82813947 82813974 -35048653 + (TG)n Simple_repeat Simple_repeat 2 28 0 225 0 0 0 chr9 82813973 82813998 -35048629 + (TA)n Simple_repeat Simple_repeat 1 25 0 * 12046 226 55 24 chr9 82813974 82818060 -35044567 - L1PB4 LINE L1 -343 6515 2557 2224 82 0 0 chr9 82818060 82818370 -35044257 - AluY SINE Alu 0 310 1 12046 226 55 24 chr9 82818370 82818579 -35044048 - L1PB4 LINE L1 -4301 2557 2356 324 0 0 0 chr9 82818579 82818615 -35044012 + (TTTTG)n Simple_repeat Simple_repeat 5 40 0 1924 128 0 7 chr9 82818615 82818897 -35043730 - AluSx SINE Alu -32 280 1 12046 226 55 24 chr9 82818897 82819190 -35043437 - L1PB4 LINE L1 -4501 2357 1756 1473 227 90 13 chr9 82819331 82819718 -35042909 - MLT1C LTR MaLR 0 467 51 2494 169 12 0 chr9 82819718 82820131 -35042496 + MSTA LTR MaLR 1 418 -10 1979 191 29 2 chr9 82820312 82820730 -35041897 - L1MA6 LINE L1 -6 6294 5866 2948 130 42 46 chr9 82820731 82821416 -35041211 + L1MA6 LINE L1 5197 5882 -418 402 337 17 6 chr9 82821467 82821639 -35040988 + MLT1I LTR MaLR 220 393 -16 251 360 37 15 chr9 82821695 82821831 -35040796 + L2 LINE L2 3175 3313 0 286 320 33 16 chr9 82821979 82822101 -35040526 + MIR SINE MIR 15 138 -124 2157 99 0 0 chr9 82822297 82822570 -35040057 + AluSc SINE Alu 2 274 -35 225 0 0 0 chr9 82822573 82822598 -35040029 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 25 31 0 0 chr9 82823148 82823180 -35039447 + AT_rich Low_complexity Low_complexity 1 32 0 2539 246 14 19 chr9 82823484 82824106 -35038521 - MLT1E2 LTR MaLR -2 624 6 281 309 101 14 chr9 82824865 82825004 -35037623 - MIR SINE MIR -110 152 2 25 0 0 0 chr9 82825149 82825174 -35037453 + AT_rich Low_complexity Low_complexity 1 25 0 2140 111 0 0 chr9 82825180 82825468 -35037159 + AluSq SINE Alu 1 288 -25 186 71 0 0 chr9 82825468 82825496 -35037131 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 1922 107 0 4 chr9 82825941 82826213 -35036414 - AluY SINE Alu -40 271 1 316 283 20 20 chr9 82826356 82826455 -35036172 + L1M4 LINE L1 4039 4137 -2009 266 228 21 88 chr9 82826606 82826765 -35035862 - HAL1 LINE L1 -1327 1180 1035 2080 135 38 24 chr9 82826765 82827135 -35035492 - THE1C LTR MaLR 0 375 1 266 228 21 88 chr9 82827135 82827168 -35035459 - HAL1 LINE L1 -1472 1035 1001 409 258 106 13 chr9 82827274 82827425 -35035202 + MIR SINE MIR 89 253 -9 745 206 7 0 chr9 82827636 82827772 -35034855 - FRAM SINE Alu -17 159 23 281 125 10 156 chr9 82827872 82827968 -35034659 - HAL1 LINE L1 -2319 188 107 369 0 0 0 chr9 82829230 82829271 -35033356 + (CA)n Simple_repeat Simple_repeat 2 42 0 5176 104 47 4 chr9 82829706 82830478 -35032149 + L1PA13 LINE L1 5351 6155 -8 349 289 151 39 chr9 82831252 82831427 -35031200 - L1MC5 LINE L1 -86 7875 7721 231 36 0 0 chr9 82831427 82831455 -35031172 + (TTG)n Simple_repeat Simple_repeat 2 29 0 349 289 151 39 chr9 82831455 82831563 -35031064 - L1MC5 LINE L1 -240 7721 7560 240 327 30 31 chr9 82832081 82832189 -35030438 + MIR SINE MIR 18 124 -84 263 254 16 87 chr9 82832251 82832377 -35030250 + MIR SINE MIR 146 262 0 1423 215 37 55 chr9 82832442 82832814 -35029813 + L1M4 LINE L1 3661 4025 -2121 3801 138 41 1 chr9 82832814 82833472 -35029155 - L1MA5 LINE L1 0 6300 5617 1423 215 37 55 chr9 82833472 82833555 -35029072 + L1M4 LINE L1 4025 4108 -2038 2012 204 40 0 chr9 82833566 82833992 -35028635 + L1M4 LINE L1 5319 5761 -423 260 363 29 0 chr9 82834523 82834625 -35028002 + MIR SINE MIR 158 262 0 2071 129 134 8 chr9 82834649 82835029 -35027598 + MSTA LTR MaLR 1 428 0 2119 141 115 18 chr9 82835673 82836063 -35026564 + MSTA LTR MaLR 1 428 0 300 297 61 32 chr9 82836285 82836531 -35026096 - L1MC4a LINE L1 -1907 5901 5649 263 319 204 9 chr9 82836581 82836807 -35025820 - L1MC4a LINE L1 -2152 5656 5387 1752 169 3 11 chr9 82836809 82837120 -35025507 - AluSx SINE Alu 0 309 1 23 92 0 0 chr9 82837126 82837191 -35025436 + AT_rich Low_complexity Low_complexity 1 65 0 29 28 0 0 chr9 82837451 82837487 -35025140 + AT_rich Low_complexity Low_complexity 1 36 0 254 184 33 145 chr9 82837531 82837683 -35024944 - HAL1 LINE L1 -1195 1312 1178 333 0 0 0 chr9 82838359 82838396 -35024231 + (CA)n Simple_repeat Simple_repeat 1 37 0 224 140 40 0 chr9 82838485 82838535 -35024092 + (TATATG)n Simple_repeat Simple_repeat 6 57 0 188 184 20 0 chr9 82838759 82838808 -35023819 + CT-rich Low_complexity Low_complexity 3 52 0 26 0 0 0 chr9 82839352 82839378 -35023249 + AT_rich Low_complexity Low_complexity 1 26 0 319 362 55 9 chr9 82839728 82839946 -35022681 + L2 LINE L2 2533 2760 -554 186 410 60 8 chr9 82840230 82840364 -35022263 + L2 LINE L2 3115 3255 -17 242 323 0 0 chr9 82840634 82840699 -35021928 - L2 LINE L2 -22 3250 3186 409 323 67 34 chr9 82840757 82841026 -35021601 - L2 LINE L2 -777 2537 2260 1223 302 46 66 chr9 82841045 82841743 -35020884 + MER21B LTR ERV1 30 713 -150 222 314 31 114 chr9 82841767 82842057 -35020570 - L2 LINE L2 -1101 2213 1948 324 305 25 34 chr9 82842161 82842279 -35020348 - MIR SINE MIR -10 252 136 198 289 0 0 chr9 82842426 82842478 -35020149 - L2 LINE L2 -2417 897 846 24 0 0 0 chr9 82842500 82842524 -35020103 + AT_rich Low_complexity Low_complexity 1 24 0 188 374 60 12 chr9 82843035 82843118 -35019509 - MIR SINE MIR -65 143 57 24 32 0 0 chr9 82843828 82843859 -35018768 + AT_rich Low_complexity Low_complexity 1 31 0 2263 84 10 0 chr9 82845768 82846066 -35016561 + AluSp SINE Alu 9 309 -4 227 387 0 27 chr9 82847289 82847400 -35015227 - MER5A DNA MER1_type -27 162 55 * 248 386 8 16 chr9 82847316 82847443 -35015184 + MER5A DNA MER1_type 63 188 -1 2556 213 11 47 chr9 82847858 82848516 -35014111 - LTR27 LTR ERV1 -1 635 2 2077 112 0 10 chr9 82850136 82850430 -35012197 + AluSg SINE Alu 1 291 -19 816 258 13 23 chr9 82850608 82850946 -35011681 + AluSq SINE Alu 1 335 0 424 116 0 0 chr9 82851582 82851651 -35010976 + L1PA6 LINE L1 6085 6153 -1 2172 109 0 0 chr9 82851990 82852275 -35010352 + AluSg SINE Alu 22 306 -4 1770 196 31 3 chr9 82852307 82852695 -35009932 - L1MB4 LINE L1 0 6180 5782 304 280 21 0 chr9 82852722 82852815 -35009812 - L1P5 LINE L1 -356 5795 5701 334 390 35 0 chr9 82854234 82854375 -35008252 + MIR3 SINE MIR 56 201 -7 344 307 53 61 chr9 82855167 82855426 -35007201 + L2 LINE L2 2765 3021 -251 2036 132 28 0 chr9 82855576 82855894 -35006733 - MER41A LTR ERV1 0 554 228 552 320 132 12 chr9 82855937 82856256 -35006371 + LTR16A LTR ERVL 26 382 -68 276 233 0 0 chr9 82856263 82856323 -35006304 + MLT1G1 LTR MaLR 530 589 -6 1011 84 0 0 chr9 82858566 82858697 -35003930 - AluY SINE Alu -138 173 43 968 71 0 0 chr9 82858697 82858824 -35003803 + AluY SINE Alu 176 302 -9 304 350 31 49 chr9 82859727 82859890 -35002737 - MIR SINE MIR -71 191 32 224 288 59 71 chr9 82859860 82860030 -35002597 + MIR3 SINE MIR 30 197 -11 * 227 277 40 10 chr9 82860799 82860900 -35001727 + (TATATG)n Simple_repeat Simple_repeat 5 108 0 550 216 86 22 chr9 82861052 82861191 -35001436 + MIR SINE MIR 105 252 -10 207 0 0 0 chr9 82861209 82861232 -35001395 + (CAT)n Simple_repeat Simple_repeat 2 24 0 613 98 0 71 chr9 82862132 82862244 -35000383 - MLT2C2 LTR ERVL -348 116 13 645 330 74 19 chr9 82862318 82862642 -34999985 - MLT1I LTR MaLR 0 409 68 21 0 0 0 chr9 82863394 82863415 -34999212 + AT_rich Low_complexity Low_complexity 1 21 0 316 40 40 0 chr9 82863834 82863884 -34998743 + (CA)n Simple_repeat Simple_repeat 1 52 0 1264 184 37 33 chr9 82865880 82866151 -34996476 + AluJb SINE Alu 3 274 -38 2086 199 29 5 chr9 82867253 82867674 -34994953 - MSTB1 LTR MaLR 0 432 2 22 0 0 0 chr9 82867818 82867840 -34994787 + AT_rich Low_complexity Low_complexity 1 22 0 333 0 0 0 chr9 82868468 82868505 -34994122 + (CA)n Simple_repeat Simple_repeat 2 38 0 3205 108 51 8 chr9 82868505 82868995 -34993632 - MER9 LTR ERVK 0 511 1 228 240 0 0 chr9 82869510 82869560 -34993067 - Charlie8 DNA MER1_type 0 2417 2368 35 83 0 0 chr9 82871150 82871234 -34991393 + AT_rich Low_complexity Low_complexity 1 84 0 21 71 0 0 chr9 82871401 82871443 -34991184 + AT_rich Low_complexity Low_complexity 1 42 0 663 331 39 21 chr9 82871769 82872053 -34990574 - MLT1K LTR MaLR -292 296 8 1969 172 43 0 chr9 82872117 82872465 -34990162 + MLT1A1 LTR MaLR 3 365 0 656 232 53 132 chr9 82872594 82872797 -34989830 - MLT1D LTR MaLR -156 349 188 1793 160 3 22 chr9 82872797 82873110 -34989517 - AluJb SINE Alu -5 307 1 656 232 53 132 chr9 82873110 82873285 -34989342 - MLT1D LTR MaLR -317 188 1 258 330 68 27 chr9 82873629 82873850 -34988777 - HAL1b LINE L1 -791 557 328 1346 138 0 0 chr9 82874498 82874735 -34987892 - AluJb SINE Alu 0 322 86 5632 33 0 0 chr9 82876581 82877250 -34985377 - L1PA4 LINE L1 -147 6008 5340 1962 201 105 2 chr9 82878103 82878518 -34984109 - MER54A LTR ERVL 0 901 236 419 116 0 70 chr9 82878610 82878696 -34983931 + MADE1 DNA Mariner 1 80 0 1697 11 0 0 chr9 82878983 82879171 -34983456 - AluY SINE Alu 0 311 124 304 253 32 2 chr9 82880806 82880923 -34981704 + L1ME3A LINE L1 5831 5950 -212 579 315 12 90 chr9 82882080 82882300 -34980327 + L2 LINE L2 2917 3153 -160 264 91 0 0 chr9 82882300 82882344 -34980283 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 579 315 12 90 chr9 82882344 82882384 -34980243 + L2 LINE L2 3153 3195 -118 1123 190 106 36 chr9 82882384 82882658 -34979969 - AluJo SINE Alu -8 294 2 579 315 12 90 chr9 82882658 82882806 -34979821 + L2 LINE L2 3195 3294 -19 184 222 37 19 chr9 82886590 82886644 -34975983 + MIR SINE MIR 99 153 -109 904 225 53 21 chr9 82887373 82887658 -34974969 + L1MCc LINE L1 17 310 -6113 1241 246 61 63 chr9 82887674 82887950 -34974677 + L1MCc LINE L1 1052 1327 -5387 2486 75 3 0 chr9 82887950 82888257 -34974370 + AluSp SINE Alu 2 313 0 1241 246 61 63 chr9 82888257 82888757 -34973870 + L1MCc LINE L1 1327 1824 -4890 1355 275 117 35 chr9 82888899 82891017 -34971610 + L1MCa LINE L1 905 3362 -3064 2179 97 0 13 chr9 82891096 82891396 -34971231 + AluSc SINE Alu 1 296 -13 329 301 129 61 chr9 82891751 82892130 -34970497 + L1MCc LINE L1 1939 2343 -4598 921 215 59 0 chr9 82892512 82892768 -34969859 + L1MB7 LINE L1 5133 5403 -743 716 175 48 0 chr9 82892787 82892913 -34969714 + MLT1E LTR MaLR 34 165 -428 1020 263 24 16 chr9 82892971 82893222 -34969405 + MLT1E LTR MaLR 334 586 -7 2559 248 43 18 chr9 82893228 82893991 -34968636 + L1MB7 LINE L1 5403 6184 0 257 180 12 0 chr9 82894525 82894586 -34968041 - L1MC2 LINE L1 -4 6329 6265 432 298 131 47 chr9 82894595 82895161 -34967466 + L1MCc LINE L1 3478 4103 -2838 1916 180 19 3 chr9 82895195 82895562 -34967065 - L1PB4 LINE L1 -1 6155 5783 233 224 0 0 chr9 82895578 82895627 -34967000 - L1MC4 LINE L1 -1337 6705 6657 23 54 0 0 chr9 82896001 82896038 -34966589 + AT_rich Low_complexity Low_complexity 1 37 0 356 264 0 11 chr9 82896196 82896287 -34966340 + L1MC4 LINE L1 6614 6703 -1339 339 241 46 11 chr9 82896291 82896354 -34966273 + L1MC4 LINE L1 6614 6682 -1360 1053 150 0 0 chr9 82896354 82896534 -34966093 + (TA)n Simple_repeat Simple_repeat 1 180 0 339 241 46 11 chr9 82896534 82896557 -34966070 + L1MC4 LINE L1 6682 6703 -1339 192 179 0 0 chr9 82896557 82896596 -34966031 + (TATATG)n Simple_repeat Simple_repeat 3 41 0 590 280 95 29 chr9 82947279 82947625 -34915002 + L1ME3A LINE L1 5519 5887 -234 1281 135 31 0 chr9 82947773 82947995 -34914632 + L1MA5 LINE L1 6071 6299 -1 1763 193 38 33 chr9 82948092 82948486 -34914141 - L1MC1 LINE L1 0 6333 5938 227 81 0 0 chr9 82948609 82948646 -34913981 - L1M LINE L1 -1043 5290 5254 246 219 49 49 chr9 82949499 82949581 -34913046 - L2 LINE L2 -4 3268 3187 373 291 80 56 chr9 82949652 82949865 -34912762 + L1MEc LINE L1 1540 1757 -4639 363 224 129 54 chr9 82949872 82950019 -34912608 + L1MA9 LINE L1 6113 6270 -42 221 286 0 48 chr9 82950113 82950176 -34912451 - L2 LINE L2 -9 3263 3204 268 150 0 0 chr9 82950358 82950398 -34912229 + U2 snRNA snRNA 1 40 -148 1285 218 8 12 chr9 82950654 82950911 -34911716 + AluJo SINE Alu 41 296 -16 239 330 11 0 chr9 82951063 82951151 -34911476 + L1ME3A LINE L1 5994 6082 -88 1686 175 26 34 chr9 82951337 82951715 -34910912 - THE1C LTR MaLR 0 375 1 22 35 0 0 chr9 82952837 82952866 -34909761 + AT_rich Low_complexity Low_complexity 1 29 0 313 358 41 27 chr9 82953643 82953864 -34908763 + L2 LINE L2 2587 2810 -504 6613 142 25 74 chr9 82954098 82956289 -34906338 + L1PA14 LINE L1 3872 5934 -227 287 331 13 60 chr9 82957598 82957749 -34904878 - MIR SINE MIR -114 148 5 286 333 20 10 chr9 82958175 82958277 -34904350 - L2 LINE L2 -2 3311 3209 350 304 143 6 chr9 82958374 82958542 -34904085 + MER69 DNA AcHobo 1 191 -2335 370 170 27 54 chr9 82958715 82958827 -34903800 + L1MC5 LINE L1 7802 7910 -51 23 0 0 0 chr9 82958985 82959008 -34903619 + AT_rich Low_complexity Low_complexity 1 23 0 296 236 28 14 chr9 82959608 82959680 -34902947 - L2 LINE L2 -9 3263 3191 2052 182 43 12 chr9 82960525 82960942 -34901685 + Tigger2a DNA MER2_type 5 434 0 1209 177 10 0 chr9 82961172 82961381 -34901246 - MER2 DNA MER2_type -134 211 1 325 313 117 18 chr9 82961957 82962120 -34900507 - MIR SINE MIR -47 215 37 454 306 86 20 chr9 82962860 82963105 -34899522 + MIR SINE MIR 1 261 -1 202 324 15 15 chr9 82965075 82965143 -34897484 - L2 LINE L2 -3 3310 3243 1706 171 26 19 chr9 82965956 82966266 -34896361 + AluJb SINE Alu 1 312 0 198 103 0 0 chr9 82966269 82966298 -34896329 + (A)n Simple_repeat Simple_repeat 1 29 0 1137 255 69 77 chr9 82966793 82967288 -34895339 + MLT2B1 LTR ERVL 1 376 -38 422 283 64 17 chr9 82969790 82969963 -34892664 - L1ME3A LINE L1 -1 6169 5989 222 323 67 49 chr9 82970348 82970512 -34892115 - MER5B DNA MER1_type 0 178 12 230 278 38 75 chr9 82970611 82970744 -34891883 - MER5A DNA MER1_type -1 188 61 660 181 11 17 chr9 82970752 82970929 -34891698 + CT-rich Low_complexity Low_complexity 3 178 0 185 401 15 0 chr9 82971391 82971523 -34891104 - L2 LINE L2 -781 2533 2400 326 327 48 30 chr9 82972586 82972751 -34889876 - L3 LINE CR1 -3 1574 1407 268 339 23 47 chr9 82972837 82973008 -34889619 + MER5A DNA MER1_type 21 187 -2 466 291 159 0 chr9 82973020 82973171 -34889456 - MER5A DNA MER1_type -6 183 9 457 346 138 44 chr9 82973183 82973732 -34888895 - L3 LINE CR1 -278 1299 699 6087 9 1 0 chr9 82973749 82974438 -34888189 - L1PA2 LINE L1 -4 6151 5462 296 323 195 18 chr9 82974628 82974699 -34887928 - MER20 DNA MER1_type -21 198 141 2135 171 39 10 chr9 82974699 82975113 -34887514 + MSTB LTR MaLR 1 426 0 296 323 195 18 chr9 82975113 82975205 -34887422 - MER20 DNA MER1_type -78 141 6 1005 293 42 3 chr9 82975519 82975826 -34886801 + MER110 LTR ERV1 166 484 -7 298 233 0 75 chr9 82975965 82976085 -34886542 + GA-rich Low_complexity Low_complexity 3 113 0 212 331 99 25 chr9 82978126 82978247 -34884380 - MIR SINE MIR -25 237 108 24 0 0 0 chr9 82979050 82979074 -34883553 + AT_rich Low_complexity Low_complexity 1 24 0 270 339 31 31 chr9 82979587 82979717 -34882910 + MIR SINE MIR 20 149 -59 180 257 0 0 chr9 82979947 82979982 -34882645 + MIR3 SINE MIR 150 184 -24 2105 132 15 24 chr9 82980172 82980512 -34882115 - MER1B DNA MER1_type 0 337 1 358 288 74 29 chr9 82980967 82981210 -34881417 - L1ME3A LINE L1 -112 6009 5756 486 271 14 43 chr9 82981258 82981398 -34881229 - MIR SINE MIR -31 231 96 680 263 91 9 chr9 82981878 82982273 -34880354 + LTR40b LTR ERVL 1 462 0 225 340 20 0 chr9 82982275 82982375 -34880252 - L1ME3A LINE L1 -540 5581 5480 330 331 7 27 chr9 82983670 82983818 -34878809 + MIR SINE MIR 118 262 0 25 31 0 0 chr9 82983824 82983856 -34878771 + AT_rich Low_complexity Low_complexity 1 32 0 250 268 72 0 chr9 82984072 82984169 -34878458 - MIR SINE MIR -38 224 121 637 304 100 30 chr9 82984194 82984786 -34877841 - L1ME3A LINE L1 -271 5899 5267 22 0 0 0 chr9 82984852 82984874 -34877753 + AT_rich Low_complexity Low_complexity 1 22 0 359 297 44 57 chr9 82984949 82985178 -34877449 - L1ME3A LINE L1 -913 5233 5008 328 310 82 18 chr9 82985310 82985481 -34877146 - L1ME3A LINE L1 -1323 4823 4642 380 224 63 30 chr9 82985497 82985650 -34876977 - L1 LINE L1 -1207 4939 4781 360 64 0 0 chr9 82985863 82985910 -34876717 + (TA)n Simple_repeat Simple_repeat 1 47 0 1712 163 88 19 chr9 82985930 82986292 -34876335 - L1PA16 LINE L1 0 6166 5780 776 127 8 0 chr9 82986288 82986406 -34876221 + L1PA16 LINE L1 5682 5800 -366 * 625 148 71 56 chr9 82986407 82986603 -34876024 + ORSL DNA AcHobo 77 275 0 1399 281 66 9 chr9 82986810 82987450 -34875177 - L1 LINE L1 -1456 4690 4015 240 259 65 0 chr9 82987600 82987708 -34874919 - L1 LINE L1 -2374 3772 3658 330 291 40 7 chr9 82987739 82987887 -34874740 - L1 LINE L1 -2661 3485 3333 932 254 127 43 chr9 82987937 82988710 -34873917 - L1 LINE L1 -2907 3239 2402 509 199 27 0 chr9 82990041 82990230 -34872397 + CT-rich Low_complexity Low_complexity 1 194 0 243 0 0 0 chr9 82990230 82990257 -34872370 + (CA)n Simple_repeat Simple_repeat 1 27 0 219 214 0 36 chr9 82990639 82990723 -34871904 + CT-rich Low_complexity Low_complexity 2 82 0 212 339 101 9 chr9 82990746 82990855 -34871772 + MIR SINE MIR 25 143 -119 300 321 75 8 chr9 82990869 82991003 -34871624 + MER117 DNA MER1_type 2 144 -53 33 25 0 0 chr9 82991420 82991460 -34871167 + AT_rich Low_complexity Low_complexity 1 40 0 284 316 38 44 chr9 82991595 82991753 -34870874 - MER5B DNA MER1_type 0 178 22 255 298 92 23 chr9 82991729 82991860 -34870767 - MIR3 SINE MIR -31 177 38 * 219 167 0 0 chr9 82992063 82992105 -34870522 + (TA)n Simple_repeat Simple_repeat 1 42 0 1040 258 161 33 chr9 82992161 82993317 -34869310 + L1M4 LINE L1 1216 2689 -3995 23 68 0 0 chr9 82993337 82993381 -34869246 + AT_rich Low_complexity Low_complexity 1 44 0 236 161 16 0 chr9 82993445 82993507 -34869120 + T-rich Low_complexity Low_complexity 3 65 0 5691 160 9 12 chr9 82993507 82995123 -34867504 - L1PB1 LINE L1 -38 6170 4556 2300 197 31 24 chr9 82995138 82995692 -34866935 - L1PB1 LINE L1 -2154 4049 3492 3556 291 23 11 chr9 82995698 82996447 -34866180 - L1PB1 LINE L1 -5439 765 8 * 7640 241 24 11 chr9 82996414 82998031 -34864596 - L1PBa LINE L1 -5219 1644 8 313 196 174 0 chr9 82998110 82998202 -34864425 + MER58 DNA MER1_type 2313 2420 0 827 300 92 2 chr9 82998202 82998615 -34864012 + L1M4 LINE L1 3554 4013 -2631 198 71 0 0 chr9 82998615 82998643 -34863984 + (CA)n Simple_repeat Simple_repeat 1 28 0 827 300 92 2 chr9 82998643 82998683 -34863944 + L1M4 LINE L1 4013 4048 -2596 1801 236 68 19 chr9 82999369 82999885 -34862742 + L1M3e LINE L1 1 541 -6489 * 5266 169 39 8 chr9 82999881 83001336 -34861291 + L1MA9 LINE L1 4809 6306 -6 28 61 0 0 chr9 83002475 83002524 -34860103 + AT_rich Low_complexity Low_complexity 1 49 0 207 0 0 0 chr9 83003377 83003400 -34859227 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 28 0 0 0 chr9 83003613 83003641 -34858986 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr9 83005991 83006012 -34856615 + AT_rich Low_complexity Low_complexity 1 21 0 609 321 132 27 chr9 83006564 83007124 -34855503 + L1ME4a LINE L1 5316 5934 -187 1906 260 128 79 chr9 83008120 83009275 -34853352 - MER69B DNA AcHobo -5 1221 10 236 288 50 25 chr9 83010174 83010254 -34852373 + L2 LINE L2 3190 3271 -1 180 0 0 0 chr9 83012353 83012373 -34850254 + (TAA)n Simple_repeat Simple_repeat 2 21 0 555 156 16 16 chr9 83012505 83012633 -34849994 + CT-rich Low_complexity Low_complexity 4 131 0 2388 151 43 7 chr9 83012647 83013064 -34849563 - MSTB1 LTR MaLR 0 432 1 386 345 82 52 chr9 83017113 83017443 -34845184 - L2 LINE L2 -1 3271 2932 1491 237 13 18 chr9 83017723 83018111 -34844516 + L1ME1 LINE L1 5775 6160 -6 889 271 36 4 chr9 83018378 83018603 -34844024 - MIR SINE MIR -17 245 14 216 67 0 0 chr9 83019421 83019451 -34843176 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 445 273 112 14 chr9 83019872 83020015 -34842612 - MER90 LTR ERV1 -16 598 442 660 207 30 47 chr9 83020154 83020323 -34842304 - MER90 LTR ERV1 -406 169 4 1572 217 58 12 chr9 83021644 83022054 -34840573 - L1MD3 LINE L1 -165 7830 7402 260 226 11 86 chr9 83022057 83022150 -34840477 - MLT1F1 LTR MaLR -447 120 35 604 182 42 0 chr9 83022150 83022293 -34840334 - L1MD3 LINE L1 -879 7116 6968 5302 178 37 15 chr9 83022296 83023623 -34839004 - L1MA4 LINE L1 -1 6299 4955 2195 95 0 0 chr9 83023623 83023937 -34838690 - AluSx SINE Alu 0 314 1 1562 181 25 47 chr9 83023946 83024310 -34838317 - L1MB8 LINE L1 0 6178 5823 5720 111 34 6 chr9 83024310 83025558 -34837069 - L1PA14 LINE L1 -2 6159 4885 1484 203 14 39 chr9 83025699 83025913 -34836714 + L1MB7 LINE L1 5254 5457 -727 1547 129 141 11 chr9 83025913 83026176 -34836451 - AluSg1 SINE Alu -12 297 1 1484 203 14 39 chr9 83026176 83026321 -34836306 + L1MB7 LINE L1 5457 5604 -580 1872 173 7 64 chr9 83026329 83026781 -34835846 - L1MA4 LINE L1 -2408 3738 3313 * 5551 169 20 32 chr9 83026774 83028160 -34834467 + L1MA4 LINE L1 4931 6289 -11 830 194 40 20 chr9 83028162 83028454 -34834173 + L1MB7 LINE L1 5584 6053 -131 239 224 17 0 chr9 83028442 83028500 -34834127 - L1M4 LINE L1 -1075 5071 5013 * 24 0 0 0 chr9 83028645 83028669 -34833958 + AT_rich Low_complexity Low_complexity 1 24 0 212 232 24 12 chr9 83028701 83028783 -34833844 + (TA)n Simple_repeat Simple_repeat 1 83 0 22 35 0 0 chr9 83028787 83028816 -34833811 + AT_rich Low_complexity Low_complexity 1 29 0 1217 209 39 94 chr9 83029132 83029568 -34833059 + MLT2D LTR ERVL 1 412 -2 2261 201 21 68 chr9 83030007 83030580 -34832047 + MLT2B3 LTR ERVL 1 546 -8 2741 187 37 20 chr9 83031271 83031816 -34830811 - MLT2B3 LTR ERVL 0 554 1 1635 155 0 85 chr9 83032277 83032593 -34830034 - AluSx SINE Alu -23 289 1 1618 251 38 18 chr9 83033589 83034084 -34828543 - L1ME2 LINE L1 -8 6156 5652 1725 191 67 20 chr9 83034086 83034614 -34828013 + L1MDa LINE L1 1019 1611 -4929 1504 242 42 56 chr9 83034616 83035120 -34827507 + MLT1D LTR MaLR 3 499 -6 2059 258 57 29 chr9 83035126 83035862 -34826765 + L1MDa LINE L1 1606 2362 -4178 253 283 11 11 chr9 83036007 83036099 -34826528 + A-rich Low_complexity Low_complexity 3 94 0 321 265 124 29 chr9 83036728 83036883 -34825744 + MIR3 SINE MIR 2 171 -37 378 238 56 103 chr9 83037281 83037407 -34825220 - L2 LINE L2 -16 3256 3137 344 252 68 88 chr9 83037458 83037605 -34825022 - MIR SINE MIR -19 243 100 2171 85 7 0 chr9 83037615 83037908 -34824719 + AluSc SINE Alu 1 295 -14 2610 33 3 0 chr9 83038144 83038449 -34824178 + AluY SINE Alu 1 306 -5 1430 212 71 25 chr9 83038449 83038775 -34823852 + MLT1A2 LTR MaLR 34 374 0 440 262 44 89 chr9 83039349 83039574 -34823053 - MER102b DNA MER1_type -10 331 117 403 271 19 84 chr9 83039971 83040126 -34822501 + L1MDa LINE L1 1799 1943 -4597 260 244 232 0 chr9 83041039 83041121 -34821506 - L1ME LINE L1 -386 5784 5684 6476 72 25 1 chr9 83041260 83042606 -34820021 - L1PA8A LINE L1 -27 6104 4732 406 265 74 31 chr9 83042617 83042779 -34819848 - L1ME LINE L1 -2461 5581 5413 1516 241 58 9 chr9 83043702 83044050 -34818577 + MLT1F LTR MaLR 173 537 -5 23 0 0 0 chr9 83044097 83044120 -34818507 + AT_rich Low_complexity Low_complexity 1 23 0 251 340 80 0 chr9 83044175 83044275 -34818352 - MIR SINE MIR -94 168 61 316 332 106 49 chr9 83045208 83045765 -34816862 + L2 LINE L2 2598 3174 -98 283 358 60 22 chr9 83046394 83046593 -34816034 - MIR3 SINE MIR -54 208 4 1419 78 0 5 chr9 83047389 83047580 -34815047 + L1PA6 LINE L1 5952 6141 -13 189 0 0 0 chr9 83048023 83048044 -34814583 + (A)n Simple_repeat Simple_repeat 1 21 0 21 71 0 0 chr9 83048517 83048559 -34814068 + AT_rich Low_complexity Low_complexity 1 42 0 1081 266 60 37 chr9 83048720 83049069 -34813558 + Charlie6 DNA MER1_type 1 357 -3143 695 346 38 24 chr9 83049076 83049449 -34813178 - LTR16B LTR ERVL 0 464 87 713 332 52 0 chr9 83049898 83050208 -34812419 - HERV16 LTR ERVL -1765 3999 3674 3271 331 52 32 chr9 83050217 83050761 -34811866 - HERV16 LTR ERVL -1900 3096 2565 1706 204 16 11 chr9 83050761 83051124 -34811503 + MLT1A1 LTR MaLR 1 365 0 3271 331 52 32 chr9 83051124 83051797 -34810830 - HERV16 LTR ERVL -2431 2565 2292 3047 96 29 22 chr9 83051797 83052247 -34810380 + MLT2A2 LTR ERVL 1 453 0 3271 331 52 32 chr9 83052247 83052994 -34809633 - HERV16 LTR ERVL -2704 2292 1562 5058 239 39 42 chr9 83053277 83054759 -34807868 + Charlie6 DNA MER1_type 332 1807 -1693 8325 176 47 26 chr9 83054834 83055915 -34806712 + L1PB3 LINE L1 3344 4401 -1753 2072 173 64 7 chr9 83055915 83056320 -34806307 - MSTA LTR MaLR 0 428 1 8325 176 47 26 chr9 83056320 83057999 -34804628 + L1PB3 LINE L1 4401 6154 0 542 166 266 18 chr9 83058038 83058207 -34804420 + Charlie6 DNA MER1_type 1822 2032 -1468 344 313 62 78 chr9 83058980 83059159 -34803468 - MIR3 SINE MIR -6 202 27 265 321 12 36 chr9 83059179 83059263 -34803364 - MIR SINE MIR -85 123 42 541 295 22 54 chr9 83059355 83059605 -34803022 + MIR SINE MIR 15 256 -6 300 224 52 52 chr9 83060220 83060336 -34802291 - MIR SINE MIR -90 172 57 186 265 61 0 chr9 83060606 83060655 -34801972 + L2 LINE L2 2929 2980 -292 2249 183 67 16 chr9 83060783 83061230 -34801397 - MLT1D LTR MaLR -31 474 5 586 284 60 65 chr9 83061554 83061938 -34800689 - MER93a LTR ERV1 0 402 21 211 317 49 12 chr9 83062445 83062527 -34800100 + L2 LINE L2 3208 3292 -21 21 36 0 0 chr9 83062604 83062632 -34799995 + AT_rich Low_complexity Low_complexity 1 28 0 201 74 0 0 chr9 83062674 83062701 -34799926 + (T)n Simple_repeat Simple_repeat 1 27 0 214 184 0 20 chr9 83063322 83063371 -34799256 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 1101 167 72 32 chr9 83063580 83063828 -34798799 + MER44D DNA MER2_type 1 528 -81 13525 124 46 61 chr9 83063828 83064030 -34798597 - Tigger1 DNA MER2_type 0 2418 2214 5123 87 20 10 chr9 83064030 83064762 -34797865 + L1PB1 LINE L1 5410 6149 -2 13525 124 46 61 chr9 83064762 83065022 -34797605 - Tigger1 DNA MER2_type -204 2214 1951 180 0 0 0 chr9 83065022 83065042 -34797585 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 13525 124 46 61 chr9 83065042 83067033 -34795594 - Tigger1 DNA MER2_type -467 1951 2 472 191 12 0 chr9 83067033 83067116 -34795511 + MER44D DNA MER2_type 522 605 0 245 256 163 12 chr9 83068316 83068402 -34794225 - MIR SINE MIR -59 203 105 262 414 59 46 chr9 83068413 83068802 -34793825 - L2 LINE L2 -21 3251 2858 265 322 78 11 chr9 83068842 83068932 -34793695 - MIR3 SINE MIR -105 103 8 13772 176 63 53 chr9 83069128 83073666 -34788961 - MER109 Unknown Unknown -23 2409 1 22 56 0 0 chr9 83074171 83074207 -34788420 + AT_rich Low_complexity Low_complexity 1 36 0 354 305 118 41 chr9 83074220 83074451 -34788176 - MIR SINE MIR -15 247 3 442 293 15 15 chr9 83075080 83075213 -34787414 + L2 LINE L2 3181 3313 0 2215 86 0 28 chr9 83075994 83076314 -34786313 - AluY SINE Alu 0 312 1 1119 216 133 55 chr9 83076379 83076800 -34785827 + MLT1C LTR MaLR 6 459 -8 24 32 0 0 chr9 83077319 83077350 -34785277 + AT_rich Low_complexity Low_complexity 1 31 0 28 71 0 0 chr9 83077367 83077423 -34785204 + AT_rich Low_complexity Low_complexity 1 56 0 236 204 37 0 chr9 83077948 83078002 -34784625 + GA-rich Low_complexity Low_complexity 4 59 0 257 259 0 0 chr9 83078515 83078573 -34784054 - L1MDb LINE L1 -5430 979 922 494 274 116 6 chr9 83079192 83079356 -34783271 + MIR SINE MIR 81 262 0 2235 101 3 0 chr9 83079862 83080159 -34782468 - AluSp SINE Alu -15 298 1 408 321 66 28 chr9 83080395 83080607 -34782020 + L1ME4a LINE L1 5685 5904 -217 1327 96 0 0 chr9 83080951 83081118 -34781509 - AluSg SINE Alu -18 294 128 7657 20 2 0 chr9 83081120 83082411 -34780216 - L1PA2 LINE L1 -6 6149 4862 5178 26 2 0 chr9 83082411 83083032 -34779595 + L1PA2 LINE L1 4224 4845 -1301 1012 97 0 8 chr9 83083032 83083166 -34779461 - AluSg SINE Alu -177 133 1 273 328 172 8 chr9 83083827 83083961 -34778666 - L2 LINE L2 -6 3266 3111 189 74 0 0 chr9 83084215 83084242 -34778385 + (CA)n Simple_repeat Simple_repeat 2 28 0 336 308 51 13 chr9 83084337 83084493 -34778134 - L1MEc LINE L1 -4616 1780 1619 515 292 44 56 chr9 83084578 83084952 -34777675 + MLT1I LTR MaLR 47 384 -25 1810 134 8 0 chr9 83085019 83085280 -34777347 - AluSc SINE Alu -8 301 39 807 86 0 0 chr9 83085417 83085534 -34777093 + (TTC)n Simple_repeat Simple_repeat 2 118 0 7116 50 5 3 chr9 83085534 83086923 -34775704 - L1PA7 LINE L1 -11 6143 4762 890 234 22 11 chr9 83087215 83087493 -34775134 - L1M4 LINE L1 -1251 4895 4615 15345 88 8 2 chr9 83087493 83090431 -34772196 - L1PA7 LINE L1 -16 6138 3189 4721 93 10 10 chr9 83090433 83091143 -34771484 + L1P LINE L1 1811 2520 -3626 1848 249 39 63 chr9 83091177 83091944 -34770683 - L1M4 LINE L1 -1537 4609 3861 260 83 21 0 chr9 83092012 83092060 -34770567 + (TA)n Simple_repeat Simple_repeat 1 49 0 506 213 37 0 chr9 83092194 83092330 -34770297 - L1M4 LINE L1 -2392 3754 3614 357 309 26 20 chr9 83092394 83092546 -34770081 - L1MEc LINE L1 -5406 799 647 3647 20 0 0 chr9 83092561 83093144 -34769483 - L1PA3 LINE L1 -474 5681 5099 3733 45 2 11 chr9 83093144 83093610 -34769017 + L1PA3 LINE L1 5692 6153 -2 222 383 33 8 chr9 83094070 83094190 -34768437 - MIR SINE MIR -120 142 20 231 61 0 0 chr9 83095827 83095860 -34766767 + (TG)n Simple_repeat Simple_repeat 2 34 0 183 129 0 0 chr9 83096057 83096088 -34766539 + (TC)n Simple_repeat Simple_repeat 2 32 0 301 324 83 39 chr9 83096513 83096717 -34765910 - L2 LINE L2 -702 2612 2400 319 305 95 33 chr9 83096967 83097177 -34765450 + L2 LINE L2 2278 2500 -814 8843 167 29 23 chr9 83097246 83099018 -34763609 - L1MA5 LINE L1 0 6300 4539 2091 119 7 0 chr9 83099018 83099312 -34763315 + AluY SINE Alu 1 296 -15 8843 167 29 23 chr9 83099312 83099599 -34763028 - L1MA5 LINE L1 -1761 4539 4255 342 0 0 0 chr9 83099599 83099637 -34762990 + (TA)n Simple_repeat Simple_repeat 1 38 0 8843 167 29 23 chr9 83099637 83100418 -34762209 - L1MA5 LINE L1 -2045 4255 3436 2028 184 63 50 chr9 83100715 83101210 -34761417 - MLT1D LTR MaLR -4 501 1 266 304 62 82 chr9 83101537 83101780 -34760847 + HAL1 LINE L1 252 489 -2018 2120 49 0 0 chr9 83102650 83102913 -34759714 - L1PA4 LINE L1 -3 6152 5890 1920 163 53 75 chr9 83102913 83103422 -34759205 + L1PA13 LINE L1 5660 6157 -6 24 0 0 0 chr9 83103957 83103981 -34758646 + AT_rich Low_complexity Low_complexity 1 24 0 6456 26 3 0 chr9 83103981 83104736 -34757891 - L1PA3 LINE L1 -3 6152 5396 615 213 26 171 chr9 83105335 83105577 -34757050 - L2 LINE L2 -5 3308 3116 2051 131 0 0 chr9 83105577 83105896 -34756731 + AluSx SINE Alu 1 319 0 615 213 26 171 chr9 83105896 83105960 -34756667 - L2 LINE L2 -197 3116 3044 792 332 53 18 chr9 83106229 83106569 -34756058 + LTR16C LTR ERVL 98 449 -42 624 275 85 11 chr9 83106797 83106986 -34755641 + MIR SINE MIR 49 251 -11 192 125 0 0 chr9 83107949 83107981 -34754646 + (GA)n Simple_repeat Simple_repeat 2 33 0 670 269 32 55 chr9 83108000 83108309 -34754318 - MLT1L LTR MaLR 0 615 314 351 0 0 0 chr9 83108534 83108573 -34754054 + (TG)n Simple_repeat Simple_repeat 2 40 0 528 273 16 0 chr9 83108630 83108758 -34753869 - MER94 DNA DNA 0 134 5 241 348 95 49 chr9 83108853 83109201 -34753426 - L2 LINE L2 -659 2655 2292 923 304 141 22 chr9 83109307 83109992 -34752635 - L2 LINE L2 -4 3309 2525 816 309 126 44 chr9 83109999 83110670 -34751957 - L2 LINE L2 -1258 2056 1305 1970 63 0 48 chr9 83110670 83110939 -34751688 + AluY SINE Alu 39 294 -17 816 309 126 44 chr9 83110939 83111085 -34751542 - L2 LINE L2 -2009 1305 1172 289 143 0 0 chr9 83111201 83111243 -34751384 - L2 LINE L2 -9 3263 3222 334 339 62 31 chr9 83111677 83111872 -34750755 - MIR SINE MIR -44 218 18 239 322 99 8 chr9 83112623 83112744 -34749883 + MIR3 SINE MIR 1 132 -76 326 122 95 40 chr9 83114499 83114573 -34748054 - MIR SINE MIR -2 260 183 2166 100 3 27 chr9 83114654 83114953 -34747674 + AluSx SINE Alu 1 292 -20 36 0 0 0 chr9 83114953 83114989 -34747638 + AT_rich Low_complexity Low_complexity 1 36 0 694 261 42 149 chr9 83115418 83116134 -34746493 - L2 LINE L2 -1910 1404 766 2120 147 94 8 chr9 83116219 83116613 -34746014 + MSTA LTR MaLR 1 428 0 607 341 52 75 chr9 83117441 83118417 -34744210 + L2 LINE L2 1629 2582 -732 272 311 117 31 chr9 83119349 83119571 -34743056 - L2 LINE L2 -61 3252 3012 1829 189 42 0 chr9 83119670 83120004 -34742623 + MER7A DNA MER2_type 1 346 0 747 144 0 72 chr9 83120153 83120306 -34742321 - FLAM_C SINE Alu -1 142 1 396 168 110 104 chr9 83120639 83120785 -34741842 - MLT1L LTR MaLR -331 259 106 736 284 77 24 chr9 83121406 83121833 -34740794 + MLT1J LTR MaLR 28 509 -2 2087 105 3 24 chr9 83121846 83122140 -34740487 - AluSg SINE Alu -22 288 1 21 36 0 0 chr9 83122389 83122417 -34740210 + AT_rich Low_complexity Low_complexity 1 28 0 26 30 0 0 chr9 83123274 83123307 -34739320 + AT_rich Low_complexity Low_complexity 1 33 0 264 157 119 50 chr9 83123420 83123579 -34739048 + (CAGTA)n Simple_repeat Simple_repeat 4 173 0 276 164 28 73 chr9 83123617 83123794 -34738833 + (CACTA)n Simple_repeat Simple_repeat 4 172 0 277 160 21 80 chr9 83123834 83124021 -34738606 + (CACTA)n Simple_repeat Simple_repeat 4 179 0 292 174 29 70 chr9 83124182 83124417 -34738210 + (CACTA)n Simple_repeat Simple_repeat 1 225 0 362 160 28 72 chr9 83124527 83124708 -34737919 + (CACTA)n Simple_repeat Simple_repeat 5 177 0 370 173 35 58 chr9 83124803 83125014 -34737613 + (CACTA)n Simple_repeat Simple_repeat 1 206 0 808 310 87 40 chr9 83125592 83126121 -34736506 + L2 LINE L2 2196 2749 -565 250 404 45 25 chr9 83126154 83126352 -34736275 + L2 LINE L2 2858 3059 -213 28 29 0 0 chr9 83126891 83126926 -34735701 + AT_rich Low_complexity Low_complexity 1 35 0 220 237 26 13 chr9 83127129 83127205 -34735422 + (CAA)n Simple_repeat Simple_repeat 2 78 0 280 357 54 39 chr9 83127912 83128041 -34734586 + MIR3 SINE MIR 30 160 -48 270 246 16 0 chr9 83128041 83128102 -34734525 - MER20B DNA MER1_type 0 783 722 232 224 61 41 chr9 83128102 83128200 -34734427 - MER20B DNA MER1_type -168 615 516 5534 39 28 1 chr9 83128827 83129515 -34733112 - L1PA4 LINE L1 -2 6153 5448 5219 44 6 0 chr9 83129515 83130170 -34732457 + L1P LINE L1 3267 3925 -2221 300 232 37 12 chr9 83130171 83130253 -34732374 - MER20B DNA MER1_type -491 292 209 925 199 22 6 chr9 83130267 83130448 -34732179 + MER5A DNA MER1_type 6 189 0 308 312 71 53 chr9 83130491 83130661 -34731966 - MER20B DNA MER1_type -46 173 1 204 330 10 41 chr9 83131856 83131953 -34730674 - L2 LINE L2 -1 3271 3178 3273 13 2 0 chr9 83132099 83132496 -34730131 - L1PA3 LINE L1 -762 5384 4987 6828 24 1 2 chr9 83132497 83133299 -34729328 + L1PA3 LINE L1 5355 6155 0 1212 75 6 0 chr9 83133453 83133614 -34729013 - L1PA10 LINE L1 -2 6166 6005 333 274 0 38 chr9 83134050 83134179 -34728448 - AluJb SINE Alu 0 305 181 1682 173 70 28 chr9 83134972 83135331 -34727296 - THE1C LTR MaLR -1 374 1 1547 252 38 43 chr9 83135627 83136500 -34726127 + L1MDb LINE L1 41 979 -5430 1479 208 17 14 chr9 83136910 83137199 -34725428 - AluJb SINE Alu -22 290 1 2334 112 0 0 chr9 83138267 83138579 -34724048 - AluSx SINE Alu 0 312 1 390 121 12 0 chr9 83139015 83139098 -34723529 + LTR1 LTR ERV1 12 95 -690 1064 122 0 6 chr9 83139111 83139267 -34723360 + LTR1 LTR ERV1 631 785 0 285 269 0 39 chr9 83139760 83139838 -34722789 - MLT1K LTR MaLR -329 259 185 719 294 51 33 chr9 83139970 83140245 -34722382 + MLT1H1 LTR MaLR 1 280 -275 518 311 67 5 chr9 83140262 83140455 -34722172 + MLT1H1 LTR MaLR 390 594 -1 22 35 0 0 chr9 83141045 83141074 -34721553 + AT_rich Low_complexity Low_complexity 1 29 0 5566 29 0 6 chr9 83142220 83142884 -34719743 + L1PA4 LINE L1 5496 6155 0 434 263 68 42 chr9 83143661 83144107 -34718520 - L1ME LINE L1 -698 5535 5082 1573 285 123 30 chr9 83144112 83145812 -34716815 - L1ME LINE L1 -1425 4790 2932 303 313 116 21 chr9 83145882 83146358 -34716269 - L1ME LINE L1 -4330 2066 1546 1231 261 76 54 chr9 83146969 83147577 -34715050 - L1ME3 LINE L1 -71 6091 5470 * 29968 38 4 4 chr9 83147564 83152057 -34710570 - L1PA4 LINE L1 -2 6153 1666 1776 68 0 4 chr9 83152050 83152284 -34710343 + L1PA4 LINE L1 1430 1662 -4484 * 22 35 0 0 chr9 83152792 83152821 -34709806 + AT_rich Low_complexity Low_complexity 1 29 0 25 51 0 0 chr9 83154018 83154057 -34708570 + AT_rich Low_complexity Low_complexity 1 39 0 343 237 24 59 chr9 83154340 83154486 -34708141 - L1ME LINE L1 -1304 1272 1094 1341 237 11 72 chr9 83154520 83154992 -34707635 - L1MC4 LINE L1 -138 7904 7462 2367 119 19 11 chr9 83156302 83156662 -34705965 - THE1B LTR MaLR -1 363 1 200 323 97 40 chr9 83157645 83157769 -34704858 - MIR SINE MIR -62 146 16 335 289 10 30 chr9 83157981 83158117 -34704510 - MIR SINE MIR -15 193 63 275 158 24 49 chr9 83158147 83158229 -34704398 - L1ME4a LINE L1 -69 6052 5973 347 261 142 0 chr9 83158309 83158443 -34704184 + MIR SINE MIR 50 202 -60 260 305 12 0 chr9 83159599 83159681 -34702946 + GA-rich Low_complexity Low_complexity 2 84 0 338 307 63 0 chr9 83159931 83160058 -34702569 - MIR SINE MIR -56 206 72 800 314 62 20 chr9 83160058 83160412 -34702215 - MLT1I LTR MaLR -16 393 25 25 31 0 0 chr9 83160527 83160559 -34702068 + AT_rich Low_complexity Low_complexity 1 32 0 298 326 41 58 chr9 83161298 83161470 -34701157 - L2 LINE L2 -4 3309 3141 386 254 150 31 chr9 83161481 83161674 -34700953 - L2 LINE L2 -825 2489 2274 1189 281 64 27 chr9 83162001 83162407 -34700220 + LTR16A LTR ERVL 30 450 0 715 301 94 71 chr9 83162469 83162991 -34699636 + MLT1H1 LTR MaLR 22 555 0 22 0 0 0 chr9 83162991 83163013 -34699614 + AT_rich Low_complexity Low_complexity 1 22 0 444 296 102 57 chr9 83163886 83164200 -34698427 + MLT1I LTR MaLR 33 360 -49 776 327 95 10 chr9 83164556 83164947 -34697680 - LTR16A LTR ERVL 0 450 27 185 313 26 87 chr9 83165061 83165176 -34697451 + L2 LINE L2 2946 3053 -219 4029 128 14 2 chr9 83165666 83166293 -34696334 - MER41B LTR ERV1 0 635 1 11507 107 32 13 chr9 83166293 83167504 -34695123 - MER41B-int LTR ERV1 0 5946 4689 2629 87 14 19 chr9 83167504 83167870 -34694757 - THE1B LTR MaLR 0 364 1 11507 107 32 13 chr9 83167870 83168395 -34694232 - MER41B-int LTR ERV1 -1257 4689 4176 11273 104 26 16 chr9 83168396 83169722 -34692905 - MER41B-int LTR ERV1 -2046 3900 2552 2414 78 57 0 chr9 83169722 83170053 -34692574 + L1PA10 LINE L1 5818 6167 -1 11273 104 26 16 chr9 83170053 83170443 -34692184 - MER41B-int LTR ERV1 -3394 2552 2167 906 85 50 20 chr9 83170439 83170628 -34691999 - MER41B-int LTR ERV1 -3929 2017 1719 * 2092 117 44 0 chr9 83170606 83170851 -34691776 - MER41B-int LTR ERV1 -3089 1791 1558 221 0 0 33 chr9 83170851 83170881 -34691746 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 2092 117 44 0 chr9 83170881 83170949 -34691678 - MER41B-int LTR ERV1 -3322 1558 1285 2097 175 33 28 chr9 83170949 83171495 -34691132 - MLT2A2 LTR ERVL 0 554 3 7895 138 33 17 chr9 83171498 83172765 -34689862 - MER41B-int LTR ERV1 -4659 1287 1 4325 113 9 3 chr9 83172765 83173396 -34689231 - MER41B LTR ERV1 0 635 1 23 68 0 0 chr9 83173584 83173628 -34688999 + AT_rich Low_complexity Low_complexity 1 44 0 183 360 79 0 chr9 83173671 83173760 -34688867 + MIR3 SINE MIR 108 203 -5 239 368 96 7 chr9 83176156 83176292 -34686335 - L2 LINE L2 -2 3270 3123 232 188 42 0 chr9 83176772 83176820 -34685807 - L2 LINE L2 0 3313 3264 455 280 105 14 chr9 83177204 83177347 -34685280 + L2 LINE L2 3109 3264 -8 1886 109 35 21 chr9 83178106 83178391 -34684236 - AluSc SINE Alu -20 289 1 473 296 128 64 chr9 83178587 83179444 -34683183 + L1MEd LINE L1 59 970 -5149 1065 160 129 81 chr9 83179590 83179922 -34682705 - MER7A DNA MER2_type 0 346 1 313 130 19 0 chr9 83179942 83179996 -34682631 + AluSc SINE Alu 238 292 -7 1017 226 147 6 chr9 83181284 83181603 -34681024 + MLT1A1 LTR MaLR 2 365 0 509 248 163 0 chr9 83181803 83181956 -34680671 + MIR SINE MIR 8 185 -77 23 0 0 0 chr9 83182991 83183014 -34679613 + GC_rich Low_complexity Low_complexity 1 23 0 373 286 143 6 chr9 83183307 83183482 -34679145 - L2 LINE L2 -178 3135 2937 241 215 101 38 chr9 83184114 83184193 -34678434 - MIR SINE MIR -80 182 99 449 349 139 20 chr9 83184926 83185322 -34677305 - L3 LINE CR1 -19 1558 1116 271 303 158 71 chr9 83185548 83185564 -34677063 - L3 LINE CR1 -801 776 763 1809 98 108 39 chr9 83185564 83185850 -34676777 - AluSg SINE Alu -4 306 1 271 303 158 71 chr9 83185850 83186213 -34676414 - L3 LINE CR1 -814 763 364 221 271 132 42 chr9 83186215 83186359 -34676268 - L2 LINE L2 -3 3310 3154 296 333 93 0 chr9 83186385 83186514 -34676113 - L3 LINE CR1 -1216 361 221 21 36 0 0 chr9 83188190 83188218 -34674409 + AT_rich Low_complexity Low_complexity 1 28 0 1873 132 21 0 chr9 83189390 83189679 -34672948 - AluJb SINE Alu -17 295 1 192 336 55 70 chr9 83189836 83189964 -34672663 + MIR SINE MIR 21 146 -62 640 313 41 4 chr9 83191081 83191324 -34671303 - L2 LINE L2 0 3313 3062 1363 275 257 14 chr9 83191327 83192157 -34670470 - L2 LINE L2 -886 2428 1398 597 274 78 15 chr9 83192462 83192666 -34669961 + L2 LINE L2 2057 2273 -1041 2241 212 25 23 chr9 83192666 83193137 -34669490 - MER70A LTR ERVL 0 472 1 2706 158 79 7 chr9 83193143 83194444 -34668183 - MER70A-int LTR ERVL 0 5023 3534 7896 176 23 12 chr9 83194444 83194821 -34667806 - MER70A-int LTR ERVL -1974 3049 2678 2224 108 3 16 chr9 83194821 83195135 -34667492 - AluSp SINE Alu -1 312 3 7896 176 23 12 chr9 83195135 83196171 -34666456 - MER70A-int LTR ERVL -2345 2678 1620 4613 166 75 25 chr9 83196171 83197056 -34665571 - MER70A-int LTR ERVL -3833 1190 262 1495 187 107 89 chr9 83197093 83197553 -34665074 - MER70A LTR ERVL 0 472 5 1350 319 57 28 chr9 83197557 83198030 -34664597 + L2 LINE L2 2269 2755 -559 4091 147 61 4 chr9 83198049 83198759 -34663868 + Tigger2 DNA MER2_type 5 754 -1964 1053 123 137 4 chr9 83198816 83199043 -34663584 + Tigger2 DNA MER2_type 2461 2717 -1 438 264 121 28 chr9 83199265 83199447 -34663180 + L2 LINE L2 3114 3312 -1 185 247 56 22 chr9 83201026 83201115 -34661512 - MER5C DNA MER1_type -182 142 51 27 0 0 0 chr9 83203281 83203308 -34659319 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr9 83203690 83203711 -34658916 + AT_rich Low_complexity Low_complexity 1 21 0 1717 181 52 70 chr9 83203711 83203738 -34658889 - L1MA9 LINE L1 -40 6272 6246 1798 169 0 32 chr9 83203738 83204051 -34658576 + AluSx SINE Alu 3 305 -7 1717 181 52 70 chr9 83204051 83204521 -34658106 - L1MA9 LINE L1 -66 6246 5784 188 209 70 0 chr9 83204719 83204762 -34657865 + MER5A DNA MER1_type 87 132 -57 258 250 26 40 chr9 83206121 83206197 -34656430 + MER46A DNA MER2_type 44 118 -118 364 123 178 0 chr9 83206210 83206283 -34656344 + MER46A DNA MER2_type 151 236 0 748 210 125 0 chr9 83207152 83207328 -34655299 - MER3 DNA MER1_type 0 209 12 515 240 140 28 chr9 83207328 83207507 -34655120 - MIR SINE MIR -48 214 16 672 271 80 63 chr9 83207936 83208224 -34654403 - MLT1I LTR MaLR -41 368 98 254 346 0 20 chr9 83208985 83209086 -34653541 + 7SLRNA srpRNA srpRNA 101 199 -121 708 256 96 69 chr9 83209250 83209582 -34653045 - L2 LINE L2 -6 3307 2967 1714 172 0 10 chr9 83209654 83209951 -34652676 + AluJo SINE Alu 1 294 -18 1494 96 136 0 chr9 83210225 83210445 -34652182 - AluSx SINE Alu -9 303 54 436 275 93 34 chr9 83211768 83212146 -34650481 - L1MC/D LINE L1 -2135 5673 5274 2118 113 17 7 chr9 83212538 83212830 -34649797 - AluSc SINE Alu -14 295 1 930 193 99 14 chr9 83213708 83213920 -34648707 + MER46A DNA MER2_type 7 236 0 245 333 15 0 chr9 83214217 83214283 -34648344 - MIR SINE MIR -183 79 13 1585 168 107 23 chr9 83214380 83214690 -34647937 + MER1B DNA MER1_type 1 336 -1 299 355 58 8 chr9 83216922 83217043 -34645584 - L2 LINE L2 -10 3262 3136 2331 89 3 0 chr9 83217668 83217961 -34644666 + AluSp SINE Alu 6 299 -14 378 351 156 5 chr9 83219623 83219834 -34642793 - L2 LINE L2 -261 3052 2810 859 73 98 0 chr9 83219841 83219964 -34642663 + L1PA8 LINE L1 6033 6167 -5 214 246 46 0 chr9 83220241 83220306 -34642321 + (TATATG)n Simple_repeat Simple_repeat 3 70 0 391 204 92 10 chr9 83221391 83221489 -34641138 - MIR SINE MIR -10 252 147 503 263 36 0 chr9 83222564 83222701 -34639926 - MER58B DNA MER1_type 0 341 200 233 378 108 0 chr9 83223272 83223383 -34639244 + L1MEc LINE L1 183 305 -6091 261 185 31 0 chr9 83223606 83223671 -34638956 + L1MEc LINE L1 855 921 -5475 1396 229 156 37 chr9 83223681 83224413 -34638214 + L1MEc LINE L1 974 1792 -4604 33 25 0 0 chr9 83224756 83224796 -34637831 + AT_rich Low_complexity Low_complexity 1 40 0 1950 141 14 10 chr9 83225300 83225597 -34637030 + AluSx SINE Alu 1 298 -14 31 51 0 39 chr9 83225705 83225783 -34636844 + AT_rich Low_complexity Low_complexity 1 75 0 219 222 0 0 chr9 83225974 83226019 -34636608 + (TG)n Simple_repeat Simple_repeat 2 46 0 470 305 90 0 chr9 83227073 83227240 -34635387 + MER91B DNA MER1_type 3 184 -6 575 289 48 44 chr9 83229560 83229788 -34632839 - MIR SINE MIR -5 257 29 858 313 44 50 chr9 83229991 83230423 -34632204 + L1ME LINE L1 2 432 -5638 2167 170 94 16 chr9 83230423 83230923 -34631704 - MER67A LTR ERV1 -2 541 3 858 313 44 50 chr9 83230923 83230985 -34631642 + L1ME LINE L1 432 493 -5577 395 153 56 0 chr9 83230985 83231057 -34631570 + MER70B LTR ERVL 1 76 -502 4311 178 63 7 chr9 83231057 83231898 -34630729 + MER70-int LTR ERVL 2595 3482 -1541 2424 171 64 5 chr9 83231907 83232430 -34630197 - L1MA9 LINE L1 -32 6271 5683 1353 150 44 11 chr9 83232434 83232771 -34629856 + MER70-int LTR ERVL 3347 3755 -1268 1303 150 66 4 chr9 83232769 83232996 -34629631 - MER70-int LTR ERVL -906 4117 3877 * 443 202 25 109 chr9 83232992 83233111 -34629516 + MER70-int LTR ERVL 3781 3889 -1134 * 5118 226 39 82 chr9 83233139 83233196 -34629431 - L1M4 LINE L1 -1198 4948 4890 2049 118 10 3 chr9 83233196 83233484 -34629143 + AluSx SINE Alu 1 290 -22 5118 226 39 82 chr9 83233484 83234369 -34628258 - L1M4 LINE L1 -1256 4890 3969 1778 87 0 0 chr9 83234369 83234598 -34628029 + AluY SINE Alu 73 301 -10 5118 226 39 82 chr9 83234598 83235818 -34626809 - L1M4 LINE L1 -2177 3969 2885 2311 110 0 0 chr9 83235818 83236127 -34626500 - AluY SINE Alu -2 309 1 5118 226 39 82 chr9 83236127 83236244 -34626383 - L1M4 LINE L1 -3261 2885 2765 1185 262 107 44 chr9 83236269 83236968 -34625659 + L1M4 LINE L1 3017 3759 -2387 1122 169 144 26 chr9 83236997 83237345 -34625282 + L1M4 LINE L1 4899 5287 -859 882 218 142 38 chr9 83237346 83237458 -34625169 + Charlie1 DNA MER1_type 1421 1520 -1241 2453 63 7 3 chr9 83237458 83237759 -34624868 - AluY SINE Alu -9 302 1 882 218 142 38 chr9 83237759 83237990 -34624637 + Charlie1 DNA MER1_type 1520 1800 -961 2685 42 0 3 chr9 83238003 83238315 -34624312 - AluY SINE Alu 0 311 1 2713 193 54 58 chr9 83238343 83238577 -34624050 + Charlie1 DNA MER1_type 1582 1815 -946 2637 42 3 0 chr9 83238577 83238887 -34623740 - AluY SINE Alu 0 311 1 2713 193 54 58 chr9 83238887 83239443 -34623184 + Charlie1 DNA MER1_type 1815 2369 -392 379 356 0 0 chr9 83239458 83239562 -34623065 - MIR SINE MIR -153 109 6 2255 95 3 29 chr9 83239646 83239962 -34622665 + AluSx SINE Alu 1 308 -4 262 306 175 6 chr9 83240548 83240708 -34621919 - MIR SINE MIR -56 206 20 185 282 13 64 chr9 83242189 83242267 -34620360 - MIR3 SINE MIR -37 171 98 211 419 79 22 chr9 83242410 83242687 -34619940 + L2 LINE L2 2945 3237 -35 960 146 6 6 chr9 83242700 83242871 -34619756 - L1MA4A LINE L1 0 6303 6133 631 200 0 25 chr9 83243996 83244116 -34618511 - FLAM_A SINE Alu -19 123 7 366 23 0 0 chr9 83244829 83244872 -34617755 + (TG)n Simple_repeat Simple_repeat 2 44 0 258 125 0 0 chr9 83244954 83245002 -34617625 + (TA)n Simple_repeat Simple_repeat 1 48 0 217 0 0 0 chr9 83245309 83245333 -34617294 + (TTTA)n Simple_repeat Simple_repeat 1 180 0 1706 128 72 8 chr9 83245333 83245598 -34617029 - AluSx SINE Alu -1 305 1 21 0 0 0 chr9 83245598 83245619 -34617008 + AT_rich Low_complexity Low_complexity 1 21 0 401 133 0 111 chr9 83246105 83246138 -34616489 + MADE1 DNA Mariner 1 36 -44 2093 129 3 0 chr9 83246138 83246433 -34616194 - AluSx SINE Alu -16 296 1 401 133 0 111 chr9 83246433 83246489 -34616138 + MADE1 DNA Mariner 36 80 0 2071 108 24 10 chr9 83248057 83248353 -34614274 - AluSq SINE Alu -13 300 1 479 339 18 0 chr9 83248358 83248523 -34614104 - MIR SINE MIR -49 213 46 21 0 0 0 chr9 83249142 83249163 -34613464 + AT_rich Low_complexity Low_complexity 1 21 0 250 264 82 0 chr9 83249724 83249834 -34612793 - L1ME4a LINE L1 -57 6064 5946 209 243 0 27 chr9 83250093 83250103 -34612524 + (TA)n Simple_repeat Simple_repeat 1 10 -62 1488 159 3 69 chr9 83250103 83250392 -34612235 - AluSx SINE Alu -7 305 36 209 243 0 27 chr9 83250392 83250455 -34612172 + (TA)n Simple_repeat Simple_repeat 10 72 0 231 261 0 0 chr9 83250597 83250643 -34611984 + L2 LINE L2 3262 3307 -6 23 0 0 0 chr9 83250805 83250828 -34611799 + AT_rich Low_complexity Low_complexity 1 23 0 193 73 24 24 chr9 83252187 83252228 -34610399 + (TTTTTG)n Simple_repeat Simple_repeat 4 44 0 1656 107 0 0 chr9 83252288 83252503 -34610124 + AluSc SINE Alu 86 300 -9 28 0 0 0 chr9 83253602 83253630 -34608997 + AT_rich Low_complexity Low_complexity 1 28 0 286 327 47 9 chr9 83254408 83254515 -34608112 + L2 LINE L2 3162 3272 0 266 281 83 41 chr9 83254876 83254997 -34607630 - MIR SINE MIR -56 206 81 1586 260 129 35 chr9 83256636 83257832 -34604795 + L1MDb LINE L1 760 2047 -4359 213 284 0 32 chr9 83258103 83258198 -34604429 + CT-rich Low_complexity Low_complexity 4 95 0 848 221 27 62 chr9 83258243 83258646 -34603981 + L1MDb LINE L1 2101 2489 -3917 2535 340 69 29 chr9 83258646 83260156 -34602471 + ERVL LTR ERVL 1935 3505 -2259 1570 199 24 7 chr9 83260169 83260461 -34602166 + AluJo SINE Alu 1 297 -15 1110 339 8 0 chr9 83260597 83260951 -34601676 + LTR16A LTR ERVL 94 450 0 464 279 165 17 chr9 83261200 83261437 -34601190 - L3 LINE CR1 -178 1399 1128 491 285 86 80 chr9 83262503 83262702 -34599925 + MIR SINE MIR 2 200 -62 417 291 180 6 chr9 83263181 83263258 -34599369 - MIR SINE MIR -12 250 188 1800 146 101 3 chr9 83263258 83263586 -34599041 + MER46B DNA MER2_type 1 235 -1 417 291 180 6 chr9 83263586 83263680 -34598947 - MIR SINE MIR -74 188 49 375 211 95 11 chr9 83265538 83265633 -34596994 - MIR SINE MIR -70 192 90 278 274 0 0 chr9 83265700 83265762 -34596865 + MER63 DNA MER1_type 999 1060 0 277 358 8 16 chr9 83265762 83265884 -34596743 - LTR16A LTR ERVL -162 288 168 4817 163 36 25 chr9 83266250 83266370 -34596257 - L1MA9 LINE L1 -22 6290 6173 186 71 0 0 chr9 83266370 83266398 -34596229 + (TG)n Simple_repeat Simple_repeat 1 28 0 4817 163 36 25 chr9 83266398 83266782 -34595845 - L1MA9 LINE L1 -139 6173 5795 244 0 0 53 chr9 83266782 83266820 -34595807 + (CA)n Simple_repeat Simple_repeat 2 37 0 4817 163 36 25 chr9 83266820 83267264 -34595363 - L1MA9 LINE L1 -517 5795 5331 3397 168 55 24 chr9 83267253 83267522 -34595105 + L1 LINE L1 4574 4833 -1313 * 1994 146 10 0 chr9 83267522 83267810 -34594817 - AluSx SINE Alu -21 291 1 3397 168 55 24 chr9 83267810 83268279 -34594348 + L1 LINE L1 4833 5335 -811 528 256 82 92 chr9 83270277 83270570 -34592057 - MLT1I LTR MaLR -49 360 71 301 151 57 0 chr9 83270681 83270734 -34591893 - MER116 DNA Mariner -24 56 1 189 380 39 23 chr9 83271041 83271170 -34591457 - L2 LINE L2 -443 2871 2741 317 278 68 74 chr9 83271518 83271680 -34590947 - L3 LINE CR1 -12 1565 1405 600 256 73 5 chr9 83272489 83272680 -34589947 + MER106A DNA MER1_type 1 204 -32 180 359 57 19 chr9 83273722 83273828 -34588799 - L2 LINE L2 -1 3271 3162 * 334 299 69 64 chr9 83273823 83274027 -34588600 - L2 LINE L2 -223 3049 2845 21 71 0 0 chr9 83274208 83274250 -34588377 + AT_rich Low_complexity Low_complexity 1 42 0 491 288 31 39 chr9 83274641 83274870 -34587757 + LTR33 LTR ERVL 292 518 -3 680 239 210 20 chr9 83275286 83275591 -34587036 - L1ME LINE L1 -391 5773 5411 298 125 36 0 chr9 83275618 83275674 -34586953 - L1MC/D LINE L1 -783 5459 5402 609 283 12 6 chr9 83275684 83275857 -34586770 - MLT1F LTR MaLR 0 542 369 420 319 9 0 chr9 83275903 83276016 -34586611 - MLT1F LTR MaLR -316 274 161 7145 236 82 18 chr9 83276030 83278025 -34584602 - L1MDa LINE L1 -4384 2156 34 244 309 15 0 chr9 83279790 83279858 -34582769 + (CATATA)n Simple_repeat Simple_repeat 1 69 0 2239 112 0 0 chr9 83280007 83280303 -34582324 - AluSq SINE Alu -15 298 3 658 365 119 7 chr9 83280574 83280985 -34581642 - L2 LINE L2 -337 2977 2521 22 56 0 0 chr9 83281308 83281344 -34581283 + AT_rich Low_complexity Low_complexity 1 36 0 2426 170 68 8 chr9 83281344 83281844 -34580783 - L1MB3 LINE L1 -7 6176 5647 372 269 60 52 chr9 83282034 83282168 -34580459 + MIR SINE MIR 78 212 -50 607 247 0 0 chr9 83282275 83282425 -34580202 - L1MA10 LINE L1 -3 6331 6182 284 239 110 0 chr9 83282456 83282565 -34580062 - L1ME2 LINE L1 -152 6012 5892 323 295 52 58 chr9 83282803 83282976 -34579651 + L1ME4a LINE L1 5653 5824 -297 278 228 99 20 chr9 83283239 83283340 -34579287 + L1ME4a LINE L1 5961 6069 -52 5025 74 155 0 chr9 83284057 83284772 -34577855 + LTR12 LTR ERV1 1 826 0 1187 354 99 43 chr9 83284977 83286295 -34576332 + L2 LINE L2 1825 3223 -90 2753 141 5 0 chr9 83286396 83286828 -34575799 - MER57B LTR ERV1 0 434 1 319 208 156 0 chr9 83286834 83286911 -34575716 - L2 LINE L2 0 3272 3184 842 329 12 37 chr9 83287245 83287649 -34574978 - ERVL LTR ERVL -2526 3238 2845 22 35 0 0 chr9 83287690 83287719 -34574908 + AT_rich Low_complexity Low_complexity 1 29 0 225 344 185 16 chr9 83288957 83289146 -34573481 - MIR SINE MIR -20 242 22 263 185 0 0 chr9 83289420 83289474 -34573153 + MLT2C1 LTR ERVL 1 54 -343 7444 107 137 101 chr9 83289474 83291111 -34571516 + pTR5 LTR ERV1 743 2438 0 1095 183 92 78 chr9 83291115 83291410 -34571217 + MLT2C1 LTR ERVL 52 350 -47 35 41 0 0 chr9 83291412 83291461 -34571166 + AT_rich Low_complexity Low_complexity 1 49 0 269 146 0 0 chr9 83291482 83291523 -34571104 + MLT2C1 LTR ERVL 357 397 0 181 328 45 0 chr9 83292230 83292297 -34570330 - L2 LINE L2 -5 3308 3239 186 320 73 50 chr9 83292386 83292605 -34570022 - L2 LINE L2 -212 3060 2837 213 267 341 0 chr9 83292707 83292842 -34569785 + MER5A DNA MER1_type 9 189 0 846 277 76 92 chr9 83292970 83293469 -34569158 + L2 LINE L2 2823 3313 0 373 188 0 35 chr9 83293935 83294020 -34568607 - MER3 DNA MER1_type -109 100 19 235 47 0 47 chr9 83294498 83294541 -34568086 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 4833 158 35 12 chr9 83294812 83295666 -34566961 + L1MCa LINE L1 41 914 -5512 4433 139 21 6 chr9 83295668 83296371 -34566256 + MER50 LTR ERV1 3 716 -18 1484 106 5 0 chr9 83296371 83296589 -34566038 + L1MCa LINE L1 917 1135 -5291 225 227 114 0 chr9 83296595 83296683 -34565944 - L1MC4 LINE L1 -1339 6703 6606 * 2340 164 55 33 chr9 83296673 83297369 -34565258 + L1MCa LINE L1 1148 1948 -4478 1356 91 0 10 chr9 83297370 83297569 -34565058 - L1MA9 LINE L1 0 6312 6116 269 26 26 0 chr9 83297572 83297610 -34565017 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 2000 109 0 7 chr9 83297615 83297890 -34564737 - AluSg SINE Alu -37 273 1 299 222 0 0 chr9 83297911 83297965 -34564662 + Tigger5 DNA MER2_type 1 54 -2269 * 348 236 14 0 chr9 83297935 83298007 -34564620 + Tigger5 DNA MER2_type 2251 2323 0 1208 147 19 5 chr9 83298007 83298218 -34564409 - L1MA9 LINE L1 -201 6111 5898 2411 145 26 26 chr9 83299292 83299719 -34562908 + MSTC LTR MaLR 1 427 -1 1953 131 64 12 chr9 83299962 83300305 -34562322 + MER46B DNA MER2_type 1 236 0 920 202 16 12 chr9 83300617 83300925 -34561702 - MSTD LTR MaLR -2 394 4 276 254 198 51 chr9 83301184 83301361 -34561266 + MIR SINE MIR 31 233 -29 2500 96 31 6 chr9 83302174 83302529 -34560098 - THE1B LTR MaLR 0 364 1 2181 162 88 7 chr9 83302577 83303033 -34559594 - L1MA9 LINE L1 -5 6307 5815 3777 172 13 49 chr9 83303059 83303487 -34559140 - L1MA8 LINE L1 -4 6287 5845 1874 163 3 0 chr9 83303487 83303781 -34558846 + AluSx SINE Alu 1 295 -17 3777 172 13 49 chr9 83303781 83303891 -34558736 - L1MA8 LINE L1 -446 5845 5733 219 114 0 0 chr9 83303891 83303926 -34558701 + (CA)n Simple_repeat Simple_repeat 2 36 0 3777 172 13 49 chr9 83303926 83304228 -34558399 - L1MA8 LINE L1 -558 5733 5476 40800 57 6 25 chr9 83304232 83308370 -34554257 - L1PA5 LINE L1 -2 6152 2024 1156 64 51 13 chr9 83308370 83308527 -34554100 + AluSq SINE Alu 7 169 -144 40800 57 6 25 chr9 83308527 83310499 -34552128 - L1PA5 LINE L1 -4130 2024 15 1242 155 4 3 chr9 83310500 83310802 -34551825 - L1MA8 LINE L1 -743 5403 5188 22 56 0 0 chr9 83310811 83310847 -34551780 + AT_rich Low_complexity Low_complexity 1 36 0 288 273 349 0 chr9 83310849 83310981 -34551646 - MIR SINE MIR -2 260 83 2848 157 62 12 chr9 83311033 83311601 -34551026 + L1MA8 LINE L1 5688 6283 -8 189 0 0 0 chr9 83312288 83312309 -34550318 + (TG)n Simple_repeat Simple_repeat 2 22 0 290 308 145 26 chr9 83312506 83312740 -34549887 - L3 LINE CR1 -69 1508 1247 401 363 26 21 chr9 83312741 83312934 -34549693 + MIR3 SINE MIR 9 202 -6 440 283 140 101 chr9 83313043 83313449 -34549178 + MLT1J2 LTR MaLR 19 440 -10 183 129 0 0 chr9 83315193 83315224 -34547403 + (TTTTC)n Simple_repeat Simple_repeat 3 33 0 317 286 81 50 chr9 83315635 83315796 -34546831 - MIR SINE MIR -71 191 26 21 57 0 0 chr9 83315975 83316010 -34546617 + AT_rich Low_complexity Low_complexity 1 35 0 390 255 98 33 chr9 83316093 83316246 -34546381 + MIR SINE MIR 100 262 0 228 235 82 0 chr9 83316807 83316892 -34545735 - L1P LINE L1 -745 5409 5318 810 248 49 69 chr9 83317198 83317504 -34545123 + LTR41 LTR ERVL 468 767 -6 300 312 32 0 chr9 83317642 83317735 -34544892 - MER20 DNA MER1_type 0 219 124 2118 120 0 3 chr9 83318444 83318747 -34543880 + AluSx SINE Alu 1 302 0 23 0 0 0 chr9 83319788 83319811 -34542816 + AT_rich Low_complexity Low_complexity 1 23 0 782 306 61 20 chr9 83319935 83320232 -34542395 + MLT2F LTR ERVL 3 311 -352 305 319 28 14 chr9 83320234 83320375 -34542252 + MLT2F LTR ERVL 519 661 -2 302 331 150 33 chr9 83320536 83321487 -34541140 - L2 LINE L2 -958 2356 1294 2486 111 8 36 chr9 83321638 83322024 -34540603 - THE1C LTR MaLR 0 375 1 322 336 71 0 chr9 83322280 83322393 -34540234 - L2 LINE L2 -15 3257 3137 250 322 11 0 chr9 83323175 83323265 -34539362 + L2 LINE L2 2946 3036 -236 6640 69 8 271 chr9 83323277 83325154 -34537473 - SVA Other Other 0 1386 3 300 365 9 9 chr9 83325481 83325596 -34537031 - L2 LINE L2 -3 3269 3155 404 332 34 59 chr9 83326538 83326776 -34535851 - MIR SINE MIR -10 252 21 217 289 13 26 chr9 83326872 83326948 -34535679 + (CATA)n Simple_repeat Simple_repeat 2 76 0 824 140 0 0 chr9 83328542 83328656 -34533971 + FLAM_C SINE Alu 8 121 -22 448 201 116 70 chr9 83329966 83330165 -34532462 + L1MEd LINE L1 13 220 -5899 1261 197 95 37 chr9 83330909 83331234 -34531393 + MER2 DNA MER2_type 1 344 0 2658 29 0 7 chr9 83331257 83331564 -34531063 - AluY SINE Alu -6 305 1 302 331 53 15 chr9 83332048 83332181 -34530446 - MIR SINE MIR -93 169 32 1801 213 93 12 chr9 83332815 83333247 -34529380 + MLT1C LTR MaLR 1 467 0 2135 134 0 0 chr9 83333350 83333642 -34528985 - AluSq SINE Alu -19 294 3 356 352 164 0 chr9 83333730 83333949 -34528678 - MIR SINE MIR -1 261 7 234 213 45 155 chr9 83334022 83334177 -34528450 + L2 LINE L2 3175 3312 -1 1227 154 45 83 chr9 83334352 83334689 -34527938 + MER33 DNA MER1_type 1 324 0 939 112 6 77 chr9 83334848 83335018 -34527609 + AluSg/x SINE Alu 130 287 -25 683 54 11 0 chr9 83335024 83335116 -34527511 + (GGAA)n Simple_repeat Simple_repeat 2 94 0 356 135 34 22 chr9 83335233 83335322 -34527305 + GA-rich Low_complexity Low_complexity 3 92 0 496 258 119 33 chr9 83335433 83335677 -34526950 - L1ME3A LINE L1 -12 6158 5894 1168 293 54 28 chr9 83335857 83336430 -34526197 + HAL1 LINE L1 1215 1802 -705 22 0 0 0 chr9 83337091 83337113 -34525514 + AT_rich Low_complexity Low_complexity 1 22 0 535 302 129 61 chr9 83337222 83337695 -34524932 - LTR67 LTR ERVL -22 535 31 2251 83 0 17 chr9 83337733 83338035 -34524592 - AluSq SINE Alu -16 297 1 24 0 0 0 chr9 83338043 83338067 -34524560 + AT_rich Low_complexity Low_complexity 1 24 0 2138 227 78 0 chr9 83338835 83339360 -34523267 - L1ME3 LINE L1 -7 6155 5590 46 54 0 0 chr9 83339869 83339943 -34522684 + AT_rich Low_complexity Low_complexity 1 74 0 23 54 0 0 chr9 83341076 83341113 -34521514 + AT_rich Low_complexity Low_complexity 1 37 0 5015 163 32 13 chr9 83341113 83342870 -34519757 - L1PB4 LINE L1 -3 6153 4364 2123 129 7 0 chr9 83342997 83343292 -34519335 - AluSx SINE Alu -15 297 1 230 267 111 35 chr9 83343869 83344041 -34518586 + L1ME3A LINE L1 5756 5940 -230 485 136 91 0 chr9 83344422 83344510 -34518117 + MER4A LTR ERV1 3 98 -566 1851 129 3 72 chr9 83344510 83344881 -34517746 + MER4A LTR ERV1 261 664 0 325 147 107 13 chr9 83345193 83345268 -34517359 + LTR8A LTR ERV1 1 82 -609 1934 171 34 44 chr9 83345268 83345832 -34516795 + LTR10E LTR ERV1 1 618 -6 296 260 14 0 chr9 83345828 83345901 -34516726 + MER87 LTR ERV1 71 144 -397 * 956 235 137 71 chr9 83345901 83346474 -34516153 + LTR8A LTR ERV1 125 714 -13 370 290 145 16 chr9 83347037 83347223 -34515404 - MIR SINE MIR -6 256 47 357 233 0 23 chr9 83347311 83347397 -34515230 - Charlie4 DNA MER1_type -18 1943 1860 641 110 0 20 chr9 83347550 83347650 -34514977 + MER4A LTR ERV1 1 98 -566 1746 152 8 41 chr9 83347650 83347941 -34514686 + MER4A LTR ERV1 261 598 -66 4437 73 2 2 chr9 83347941 83348505 -34514122 + LTR6A LTR ERV1 1 564 0 1746 152 8 41 chr9 83348505 83348568 -34514059 + MER4A LTR ERV1 598 662 -2 306 362 39 8 chr9 83348802 83348929 -34513698 + L2 LINE L2 3134 3264 -8 25 0 0 0 chr9 83350292 83350317 -34512310 + AT_rich Low_complexity Low_complexity 1 25 0 274 352 56 14 chr9 83350441 83350583 -34512044 + MIR SINE MIR 1 146 -62 663 246 11 11 chr9 83350583 83350762 -34511865 + L1MB8 LINE L1 5999 6177 -1 335 305 0 29 chr9 83351112 83351217 -34511410 - MIR SINE MIR -149 113 12 27 29 0 0 chr9 83351352 83351386 -34511241 + AT_rich Low_complexity Low_complexity 1 34 0 22 35 0 0 chr9 83351604 83351633 -34510994 + AT_rich Low_complexity Low_complexity 1 29 0 954 239 19 0 chr9 83351913 83352122 -34510505 - MER58A DNA MER1_type 0 224 12 2409 225 93 5 chr9 83353965 83354705 -34507922 + L1MEc LINE L1 2173 2931 -3284 3001 231 12 21 chr9 83354943 83355183 -34507444 - MER82 DNA MER2_type -1 652 411 2185 159 50 13 chr9 83355183 83355579 -34507048 + LTR57 LTR ERVL 1 411 0 3001 231 12 21 chr9 83355579 83355996 -34506631 - MER82 DNA MER2_type -242 411 1 416 292 131 12 chr9 83356058 83356226 -34506401 - L2 LINE L2 -6 3307 3120 336 346 15 23 chr9 83356241 83356371 -34506256 - MIR SINE MIR -125 137 9 698 224 128 15 chr9 83356479 83356675 -34505952 + MER20 DNA MER1_type 2 219 0 4596 146 89 11 chr9 83356977 83357884 -34504743 + L1MA4A LINE L1 5317 6303 0 228 191 95 16 chr9 83357956 83358019 -34504608 - L2 LINE L2 -1 3271 3204 2123 92 24 0 chr9 83358098 83358393 -34504234 - AluSg1 SINE Alu -7 302 1 214 216 0 0 chr9 83358409 83358446 -34504181 - MIR SINE MIR -62 146 110 268 281 0 0 chr9 83359820 83359877 -34502750 - MER115 DNA AcHobo -1 692 636 607 373 81 12 chr9 83359924 83360259 -34502368 - MER115 DNA AcHobo -335 358 1 237 270 75 132 chr9 83360262 83360580 -34502047 + L3 LINE CR1 1233 1532 -45 239 217 0 0 chr9 83360777 83360823 -34501804 + L3b LINE CR1 1538 1583 0 2192 128 0 0 chr9 83360837 83361143 -34501484 + AluSx SINE Alu 3 308 -4 31 0 0 0 chr9 83361514 83361545 -34501082 + AT_rich Low_complexity Low_complexity 1 31 0 38 81 0 0 chr9 83361779 83361866 -34500761 + AT_rich Low_complexity Low_complexity 1 87 0 242 257 0 14 chr9 83362357 83362427 -34500200 - L1M1 LINE L1 -4664 2901 2833 711 257 131 41 chr9 83362531 83363142 -34499485 - L1MEd LINE L1 -4862 1257 592 204 182 0 0 chr9 83363551 83363595 -34499032 + (CA)n Simple_repeat Simple_repeat 1 44 0 1098 36 7 0 chr9 83363774 83363912 -34498715 + L1PA4 LINE L1 6015 6153 -2 446 241 117 45 chr9 83363926 83364084 -34498543 - L1ME LINE L1 -302 5819 5671 294 73 0 0 chr9 83364084 83364125 -34498502 + (CA)n Simple_repeat Simple_repeat 2 42 0 446 241 117 45 chr9 83364125 83364241 -34498386 - L1ME LINE L1 -450 5671 5565 2363 132 5 18 chr9 83367072 83367452 -34495175 - THE1C LTR MaLR 0 375 1 21 0 0 0 chr9 83367453 83367474 -34495153 + AT_rich Low_complexity Low_complexity 1 21 0 477 96 82 0 chr9 83367920 83367993 -34494634 - MADE1 DNA Mariner 0 80 2 205 349 47 0 chr9 83368309 83368415 -34494212 - L2 LINE L2 -213 3059 2949 218 346 65 38 chr9 83368790 83368975 -34493652 + L3 LINE CR1 775 964 -613 251 348 65 43 chr9 83368976 83369255 -34493372 + L3 LINE CR1 1188 1472 -105 203 192 77 0 chr9 83369471 83369523 -34493104 - MIR SINE MIR -83 179 124 2512 54 3 0 chr9 83370516 83370813 -34491814 - AluY SINE Alu -11 300 3 207 300 67 0 chr9 83371139 83371199 -34491428 + MIR SINE MIR 79 142 -120 1845 181 3 7 chr9 83372203 83372507 -34490120 - AluJb SINE Alu -9 303 1 212 292 0 0 chr9 83372631 83372679 -34489948 + L2 LINE L2 3225 3272 0 999 248 13 17 chr9 83373439 83373673 -34488954 + MIR SINE MIR 2 234 -28 300 234 0 0 chr9 83373676 83373740 -34488887 + L1MC4 LINE L1 6640 6703 -1339 277 200 0 0 chr9 83373742 83373797 -34488830 - L1MC4 LINE L1 -1339 6703 6649 2361 214 29 34 chr9 83373936 83374493 -34488134 - MLT2B3 LTR ERVL 0 554 1 320 309 46 13 chr9 83374637 83374789 -34487838 - MIR SINE MIR -6 256 100 1708 164 3 11 chr9 83374813 83375099 -34487528 + AluJb SINE Alu 1 284 -28 180 0 0 0 chr9 83375190 83375210 -34487417 + (T)n Simple_repeat Simple_repeat 1 20 0 642 263 11 42 chr9 83375314 83375504 -34487123 - MIR SINE MIR -9 253 70 182 304 13 25 chr9 83375525 83375604 -34487023 - MIR SINE MIR -6 256 179 968 252 9 0 chr9 83375920 83376142 -34486485 - MER58A DNA MER1_type 0 224 1 600 267 31 6 chr9 83377059 83377220 -34485407 + MIR SINE MIR 2 166 -96 243 295 53 11 chr9 83377619 83377714 -34484913 - MER91A DNA MER1_type -89 107 9 444 282 125 75 chr9 83377720 83378121 -34484506 + MLT1J LTR MaLR 60 444 -2 560 249 99 5 chr9 83378528 83378729 -34483898 - LTR33A LTR ERVL -4 519 300 1081 191 177 10 chr9 83378953 83379241 -34483386 - L1MA4 LINE L1 -857 5289 4954 509 143 15 75 chr9 83379239 83379372 -34483255 + L1MA4 LINE L1 5273 5397 -906 * 1114 58 0 0 chr9 83379372 83379509 -34483118 + L1PA3 LINE L1 6015 6152 -3 4976 135 25 47 chr9 83379515 83380487 -34482140 + L1MA4 LINE L1 5352 6298 -2 571 332 82 0 chr9 83381557 83381765 -34480862 - MIR SINE MIR -1 261 37 216 274 86 139 chr9 83382648 83382987 -34479640 + L2 LINE L2 2910 3230 -42 216 214 0 0 chr9 83383007 83383049 -34479578 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 210 385 87 14 chr9 83384012 83384220 -34478407 - L2 LINE L2 -225 3047 2825 2259 108 0 3 chr9 83384532 83384828 -34477799 - AluSg SINE Alu -15 295 1 287 303 32 85 chr9 83384830 83385018 -34477609 + MIR SINE MIR 80 257 -5 783 216 28 47 chr9 83385051 83385264 -34477363 + MER3 DNA MER1_type 1 209 0 29 28 0 0 chr9 83385288 83385324 -34477303 + AT_rich Low_complexity Low_complexity 1 36 0 2097 134 17 0 chr9 83385505 83385804 -34476823 + AluSq SINE Alu 1 304 -9 22 0 0 0 chr9 83385867 83385889 -34476738 + AT_rich Low_complexity Low_complexity 1 22 0 2474 51 7 0 chr9 83386185 83386480 -34476147 + AluY SINE Alu 1 297 -14 7374 127 41 35 chr9 83386781 83387455 -34475172 - HSMAR2 DNA Mariner -1 1301 614 1743 157 16 7 chr9 83387455 83387760 -34474867 + L1PB3 LINE L1 5846 6153 -1 7374 127 41 35 chr9 83387760 83388377 -34474250 - HSMAR2 DNA Mariner -688 614 2 216 0 0 0 chr9 83390023 83390047 -34472580 + (T)n Simple_repeat Simple_repeat 1 24 0 196 257 171 14 chr9 83390191 83390261 -34472366 + L2 LINE L2 3178 3258 -14 739 216 13 82 chr9 83390482 83390714 -34471913 + MER112 DNA MER1_type 11 226 -34 673 246 0 28 chr9 83391050 83391229 -34471398 + MER5B DNA MER1_type 5 178 0 302 97 26 53 chr9 83391497 83391610 -34471017 + (TTATA)n Simple_repeat Simple_repeat 3 112 0 202 216 0 0 chr9 83391613 83391650 -34470977 + (TATATG)n Simple_repeat Simple_repeat 3 39 0 2573 56 0 0 chr9 83391650 83391954 -34470673 - AluY SINE Alu -7 304 1 193 29 29 29 chr9 83391955 83391990 -34470637 + (TTATA)n Simple_repeat Simple_repeat 5 39 0 442 344 19 19 chr9 83391990 83392144 -34470483 - MER5A DNA MER1_type -25 164 11 197 373 100 33 chr9 83392499 83392740 -34469887 - L2 LINE L2 -2 3270 3014 231 286 48 0 chr9 83392801 83392864 -34469763 + MER5A DNA MER1_type 124 189 0 2616 121 28 28 chr9 83392961 83393238 -34469389 + MSTA LTR MaLR 1 280 -148 2413 70 0 7 chr9 83393238 83393538 -34469089 + AluY SINE Alu 1 298 -13 2616 121 28 28 chr9 83393538 83393682 -34468945 + MSTA LTR MaLR 279 422 -6 15965 137 9 19 chr9 83393839 83396458 -34466169 + L1PA8A LINE L1 1 2643 -3803 222 37 0 0 chr9 83396458 83396485 -34466142 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 15965 137 9 19 chr9 83396485 83397468 -34465159 + L1PA8A LINE L1 2643 3634 -2812 2335 96 0 19 chr9 83397468 83397782 -34464845 + AluSg SINE Alu 1 308 -2 15965 137 9 19 chr9 83397782 83400619 -34462008 + L1PA8A LINE L1 3634 6441 -5 280 278 28 0 chr9 83400939 83401011 -34461616 - L2 LINE L2 -4 3309 3236 30 27 0 0 chr9 83401671 83401708 -34460919 + AT_rich Low_complexity Low_complexity 1 37 0 244 317 0 0 chr9 83403173 83403233 -34459394 - MIR SINE MIR -196 66 7 423 0 0 0 chr9 83404033 83404080 -34458547 + (CA)n Simple_repeat Simple_repeat 2 48 0 1057 268 74 40 chr9 83404260 83404640 -34457987 + L2 LINE L2 2921 3313 0 304 273 73 9 chr9 83405659 83405769 -34456858 - MIR SINE MIR -109 153 37 277 294 29 39 chr9 83406242 83406344 -34456283 + L2 LINE L2 3212 3312 -1 440 141 0 0 chr9 83406553 83406624 -34456003 - L1 LINE L1 -1910 4236 4166 291 328 88 16 chr9 83407006 83407131 -34455496 + L2 LINE L2 3138 3271 -1 879 203 11 6 chr9 83407982 83408159 -34454468 - MLT1A2 LTR MaLR 0 374 197 492 233 138 32 chr9 83408980 83409169 -34453458 + MER3 DNA MER1_type 1 209 0 1221 171 58 105 chr9 83410001 83410363 -34452264 - MLT1A1 LTR MaLR -2 363 19 420 333 64 17 chr9 83410530 83410764 -34451863 - L2 LINE L2 -24 3289 3045 264 253 69 11 chr9 83412480 83412567 -34450060 - MIR SINE MIR -149 113 22 195 272 11 65 chr9 83412810 83412902 -34449725 + L2 LINE L2 3226 3312 -1 680 291 71 41 chr9 83413809 83414173 -34448454 - L2 LINE L2 0 3313 2939 205 302 56 86 chr9 83414484 83414752 -34447875 - L2 LINE L2 -922 2392 2133 240 267 121 17 chr9 83415248 83415364 -34447263 + MIR SINE MIR 8 135 -127 283 349 20 40 chr9 83415895 83416044 -34446583 + MIR SINE MIR 32 177 -85 325 98 20 0 chr9 83416439 83416490 -34446137 + MADE1 DNA Mariner 29 80 0 180 0 0 0 chr9 83416504 83416524 -34446103 + (A)n Simple_repeat Simple_repeat 1 20 0 2027 71 41 0 chr9 83416528 83416795 -34445832 + AluY SINE Alu 20 297 -14 966 245 70 50 chr9 83417524 83417907 -34444720 + LTR41 LTR ERVL 1 391 -382 2343 94 0 10 chr9 83418102 83418410 -34444217 - AluSc SINE Alu -4 305 1 260 188 62 16 chr9 83418423 83418487 -34444140 + LTR41 LTR ERVL 457 763 0 2126 160 57 26 chr9 83418529 83419051 -34443576 + MLT2A2 LTR ERVL 1 554 0 423 324 28 11 chr9 83419057 83419239 -34443388 - MIR SINE MIR -6 256 72 259 367 124 12 chr9 83420088 83420257 -34442370 - MIR3 SINE MIR -4 204 17 21 57 0 0 chr9 83420410 83420445 -34442182 + AT_rich Low_complexity Low_complexity 1 35 0 2228 92 10 0 chr9 83420597 83420889 -34441738 - AluSq SINE Alu -18 295 1 1999 128 17 0 chr9 83421281 83421570 -34441057 - AluSx SINE Alu -18 294 1 1011 311 101 19 chr9 83421610 83422025 -34440602 + MLT1J2 LTR MaLR 2 450 0 1056 185 9 19 chr9 83422169 83422385 -34440242 - L1PA16 LINE L1 -1 6165 5952 2362 42 0 0 chr9 83423584 83423870 -34438757 - L1PA4 LINE L1 -4 6151 5866 2062 146 3 0 chr9 83424007 83424316 -34438311 + AluSx SINE Alu 1 310 -2 931 259 159 28 chr9 83425178 83425537 -34437090 - MLT1E LTR MaLR 0 593 188 994 198 0 0 chr9 83425539 83425716 -34436911 - AluJb SINE Alu -7 305 129 384 22 0 0 chr9 83425716 83425761 -34436866 + (TTTTC)n Simple_repeat Simple_repeat 3 47 0 232 137 0 39 chr9 83425771 83425822 -34436805 - AluJb SINE Alu 0 133 85 674 201 9 67 chr9 83425822 83425995 -34436632 - MLT1E LTR MaLR -411 179 15 1470 67 0 19 chr9 83426834 83427042 -34435585 - L1PA13 LINE L1 0 6163 5960 434 296 33 48 chr9 83427978 83428205 -34434422 + MLT1J2 LTR MaLR 52 276 -170 404 116 0 14 chr9 83429155 83429224 -34433403 + (TCCC)n Simple_repeat Simple_repeat 1 68 0 1602 191 10 24 chr9 83429224 83429518 -34433109 - AluJb SINE Alu -22 290 1 403 272 100 54 chr9 83429715 83429976 -34432651 + L1MEd LINE L1 666 938 -5181 276 307 133 27 chr9 83430297 83430447 -34432180 + L1ME LINE L1 5474 5639 -527 260 333 17 0 chr9 83430470 83430587 -34432040 + L1ME LINE L1 5708 5826 -336 2334 76 7 0 chr9 83431282 83431571 -34431056 - AluY SINE Alu -20 291 1 24 32 0 0 chr9 83432315 83432346 -34430281 + AT_rich Low_complexity Low_complexity 1 31 0 21 57 0 0 chr9 83432572 83432607 -34430020 + AT_rich Low_complexity Low_complexity 1 35 0 652 339 54 12 chr9 83432855 83433188 -34429439 - MLT1I LTR MaLR 0 409 63 314 269 28 28 chr9 83434400 83434508 -34428119 - MER5B DNA MER1_type -10 179 64 195 281 23 55 chr9 83434407 83434535 -34428092 + MER5A DNA MER1_type 27 150 -39 * 1870 125 14 7 chr9 83434680 83434968 -34427659 - AluSx SINE Alu -20 292 3 543 31 0 0 chr9 83435113 83435178 -34427449 + (CA)n Simple_repeat Simple_repeat 2 66 0 207 0 0 0 chr9 83435574 83435597 -34427030 + (TTTTC)n Simple_repeat Simple_repeat 4 26 0 700 283 60 0 chr9 83435901 83436134 -34426493 + HsTC2 DNA Tc2 73 319 -1579 245 250 86 33 chr9 83436135 83436287 -34426340 + HsTC2 DNA Tc2 1712 1871 -27 225 318 0 47 chr9 83436318 83436403 -34426224 + MLT1J LTR MaLR 100 180 -331 183 80 0 0 chr9 83436430 83436455 -34426172 + (A)n Simple_repeat Simple_repeat 1 25 0 383 270 151 32 chr9 83436491 83436676 -34425951 + MLT1J LTR MaLR 241 447 -64 1340 174 59 86 chr9 83436869 83437243 -34425384 - MLT1A1 LTR MaLR -1 364 1 923 229 42 0 chr9 83438879 83439071 -34423556 - MLT1C LTR MaLR 0 467 268 442 264 0 114 chr9 83439281 83439407 -34423220 - MER5B DNA MER1_type -6 172 74 2282 99 3 0 chr9 83439407 83439709 -34422918 - AluY SINE Alu -6 305 3 442 264 0 114 chr9 83439709 83439775 -34422852 - MER5B DNA MER1_type -104 74 2 524 227 17 17 chr9 83440918 83441037 -34421590 - L2 LINE L2 -2 3311 3193 278 274 11 21 chr9 83441921 83442016 -34420611 + CT-rich Low_complexity Low_complexity 3 96 0 379 198 143 11 chr9 83442228 83442319 -34420308 + MER63 DNA MER1_type 680 782 -280 2155 126 14 3 chr9 83443168 83443517 -34419110 + L1MA6 LINE L1 5948 6300 0 3076 108 21 43 chr9 83443881 83444397 -34418230 - LTR10B LTR ERV1 0 505 1 185 311 146 10 chr9 83445042 83445145 -34417482 - MER5A DNA MER1_type -66 123 7 387 0 0 0 chr9 83446352 83446395 -34416232 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 818 279 214 33 chr9 83446671 83447101 -34415526 + L2 LINE L2 2804 3311 -2 525 320 90 11 chr9 83447478 83447844 -34414783 - L1ME LINE L1 -342 5779 5385 2618 107 0 0 chr9 83448181 83448536 -34414091 - THE1A LTR MaLR 0 355 1 270 262 76 35 chr9 83448709 83448854 -34413773 - L1ME LINE L1 -1252 4894 4744 215 241 0 0 chr9 83448889 83448943 -34413684 + T-rich Low_complexity Low_complexity 1 54 0 339 25 0 0 chr9 83450089 83450129 -34412498 + (T)n Simple_repeat Simple_repeat 1 40 0 3433 92 92 2 chr9 83451195 83451703 -34410924 - MER41A LTR ERV1 0 554 1 28 0 0 0 chr9 83452530 83452558 -34410069 + AT_rich Low_complexity Low_complexity 1 28 0 2296 74 0 0 chr9 83453241 83453525 -34409102 - AluY SINE Alu -11 300 17 377 261 17 26 chr9 83454252 83454367 -34408260 + L1ME LINE L1 5527 5640 -481 315 181 28 42 chr9 83454379 83454451 -34408176 + L1ME LINE L1 5570 5640 -481 315 181 28 42 chr9 83454463 83454535 -34408092 + L1ME LINE L1 5570 5640 -481 833 266 30 35 chr9 83454547 83454886 -34407741 + L1ME4a LINE L1 5570 5906 -215 23 0 0 0 chr9 83455639 83455662 -34406965 + AT_rich Low_complexity Low_complexity 1 23 0 357 310 38 112 chr9 83455909 83456274 -34406353 + L2 LINE L2 2853 3190 -82 180 260 87 77 chr9 83456267 83456371 -34406256 + L3 LINE CR1 1432 1536 -41 * 693 303 39 4 chr9 83456630 83456861 -34405766 - MIR SINE MIR 0 262 24 207 281 150 42 chr9 83457070 83457237 -34405390 + L2 LINE L2 2637 2821 -493 2942 176 12 18 chr9 83457438 83457950 -34404677 - MLT2B1 LTR ERVL -10 510 2 324 197 30 0 chr9 83458056 83458122 -34404505 - LTR16A LTR ERVL -112 338 271 757 215 78 66 chr9 83458122 83458546 -34404081 - MLT1D LTR MaLR 0 467 1 394 284 108 14 chr9 83458682 83458830 -34403797 + L2 LINE L2 3111 3272 0 214 294 59 69 chr9 83459381 83459483 -34403144 + MIR SINE MIR 152 252 -10 550 144 0 90 chr9 83460779 83460835 -34401792 + MER3 DNA MER1_type 12 55 -107 549 110 0 0 chr9 83460835 83460926 -34401701 + (TCTA)n Simple_repeat Simple_repeat 4 94 0 550 144 0 90 chr9 83460926 83460980 -34401647 + MER3 DNA MER1_type 55 112 -97 2190 120 0 10 chr9 83460980 83461289 -34401338 + AluSx SINE Alu 1 306 -6 8426 100 32 49 chr9 83461348 83462721 -34399906 - SVA Other Other 0 1386 37 185 335 149 32 chr9 83462951 83463199 -34399428 + L2 LINE L2 2510 2786 -528 14624 126 9 9 chr9 83463373 83466536 -34396091 - L1PA10 LINE L1 -5 6163 3002 1703 164 17 27 chr9 83466777 83467069 -34395558 + AluJo SINE Alu 1 289 -23 25 31 0 0 chr9 83467071 83467103 -34395524 + AT_rich Low_complexity Low_complexity 1 32 0 206 356 107 9 chr9 83467161 83467377 -34395250 - L2 LINE L2 -1092 2222 1986 315 300 154 31 chr9 83467778 83467908 -34394719 - L2 LINE L2 0 3272 3127 462 256 107 18 chr9 83468326 83468494 -34394133 - MER117 DNA MER1_type -14 183 1 535 330 78 17 chr9 83468614 83468844 -34393783 - MIR SINE MIR -4 258 15 307 295 81 57 chr9 83469211 83469421 -34393206 + L1ME LINE L1 5576 5790 -331 292 329 0 0 chr9 83470055 83470140 -34392487 - MIR SINE MIR -11 251 167 1284 362 43 25 chr9 83470816 83471826 -34390801 + ERVL LTR ERVL 4359 5386 -378 236 301 21 21 chr9 83472013 83472106 -34390521 + LTR16B LTR ERVL 240 332 -132 840 93 0 31 chr9 83472609 83472738 -34389889 - MSTA-int LTR MaLR -13 1567 1443 * 1171 147 16 0 chr9 83472728 83472919 -34389708 - MSTA-int LTR MaLR -950 630 437 8831 143 7 34 chr9 83472921 83474405 -34388222 - MSTA-int LTR MaLR -134 1446 3 992 184 103 18 chr9 83474407 83474630 -34387997 - MSTA LTR MaLR 0 428 187 7283 41 0 0 chr9 83474647 83475528 -34387099 - L1PA5 LINE L1 -3 6151 5271 1354 31 0 0 chr9 83475527 83475690 -34386937 + L1PA5 LINE L1 5086 5248 -898 * 767 158 190 6 chr9 83475690 83475848 -34386779 - MSTA LTR MaLR -227 201 15 256 115 0 39 chr9 83475952 83476004 -34386623 + L1MA9 LINE L1 6263 6312 0 1502 231 43 66 chr9 83476026 83476538 -34386089 - MLT1D LTR MaLR -5 500 1 417 298 49 26 chr9 83476664 83477013 -34385614 + L1ME1 LINE L1 1262 1618 -4924 2265 250 55 26 chr9 83477021 83477937 -34384690 + L1ME1 LINE L1 5684 6658 -6 775 207 64 10 chr9 83478043 83478246 -34384381 + L1 LINE L1 4334 4547 -1599 219 139 0 0 chr9 83478726 83478762 -34383865 + (TG)n Simple_repeat Simple_repeat 1 36 0 4565 170 7 6 chr9 83479254 83480124 -34382503 - L1 LINE L1 -816 5330 4460 195 305 109 16 chr9 83480865 83480993 -34381634 - MIR3 SINE MIR -6 202 63 23 33 0 0 chr9 83481315 83481345 -34381282 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr9 83481388 83481412 -34381215 + AT_rich Low_complexity Low_complexity 1 24 0 300 212 0 0 chr9 83481634 83481700 -34380927 + (TA)n Simple_repeat Simple_repeat 2 67 0 187 424 10 0 chr9 83482411 83482510 -34380117 - L2 LINE L2 -666 2648 2549 334 265 133 24 chr9 83482916 83483082 -34379545 + MIR SINE MIR 73 256 -6 2716 109 0 3 chr9 83483488 83483864 -34378763 + THE1C LTR MaLR 1 375 0 219 289 99 25 chr9 83484702 83484823 -34377804 + MIR SINE MIR 124 253 -9 225 385 115 28 chr9 83485977 83486367 -34376260 - L2 LINE L2 -31 3241 2818 484 330 55 11 chr9 83486571 83486844 -34375783 - L1M4 LINE L1 -2385 3761 3477 1498 137 27 81 chr9 83486858 83487223 -34375404 - MER4A LTR ERV1 0 664 261 562 59 165 12 chr9 83487223 83487308 -34375319 - MER4A LTR ERV1 -566 98 1 16180 104 54 23 chr9 83487316 83489993 -34372634 - MER4A-int LTR ERV1 -2 6596 3837 3803 130 75 50 chr9 83489992 83490914 -34371713 - MER4A-int LTR ERV1 -2917 3681 2737 * 1228 159 94 0 chr9 83490914 83491147 -34371480 + LTR8 LTR ERV1 1 255 -436 5207 126 155 25 chr9 83491148 83491541 -34371086 - MER4A-int LTR ERV1 -4102 2496 2155 243 0 0 0 chr9 83491541 83491568 -34371059 + (CA)n Simple_repeat Simple_repeat 2 28 0 5207 126 155 25 chr9 83491568 83492414 -34370213 - MER4A-int LTR ERV1 -4443 2155 189 1195 233 54 7 chr9 83492465 83492761 -34369866 - MER4A-int LTR ERV1 -4170 2161 1852 276 136 11 91 chr9 83492806 83492894 -34369733 - MER4A-int LTR ERV1 -5767 831 751 2527 93 190 51 chr9 83492966 83493460 -34369167 - MER4A-int LTR ERV1 -6035 563 1 1767 124 5 77 chr9 83493463 83493835 -34368792 - MER4A LTR ERV1 0 664 261 642 102 10 10 chr9 83493835 83493933 -34368694 - MER4A LTR ERV1 -566 98 1 449 290 123 63 chr9 83493993 83494310 -34368317 - L2 LINE L2 -560 2754 2419 2445 78 0 0 chr9 83494540 83494833 -34367794 - AluSc SINE Alu -13 296 4 1503 154 19 28 chr9 83494944 83495262 -34367365 + L1MB2 LINE L1 5857 6171 0 254 268 9 54 chr9 83495690 83495802 -34366825 - LTR33A LTR ERVL -2 521 415 290 326 83 31 chr9 83497659 83497947 -34364680 + MLT1L LTR MaLR 1 303 -312 335 208 111 0 chr9 83499652 83499724 -34362903 - L2 LINE L2 -1 3271 3192 1976 213 67 67 chr9 83499865 83500354 -34362273 - Charlie7 DNA MER1_type -84 2528 2037 361 179 0 0 chr9 83500354 83500432 -34362195 - L1MA7 LINE L1 -5 6286 6209 1976 213 67 67 chr9 83500432 83500857 -34361770 - Charlie7 DNA MER1_type -574 2038 1614 530 239 101 48 chr9 83501054 83501234 -34361393 - Charlie7 DNA MER1_type -2328 284 90 2248 103 13 0 chr9 83501234 83501534 -34361093 - AluSg SINE Alu -6 304 1 530 239 101 48 chr9 83501534 83501562 -34361065 - Charlie7 DNA MER1_type -2522 90 65 247 299 0 0 chr9 83502669 83502736 -34359891 - MER117 DNA MER1_type -1 196 130 33 25 0 0 chr9 83503002 83503042 -34359585 + AT_rich Low_complexity Low_complexity 1 40 0 507 253 191 6 chr9 83504643 83504821 -34357806 + MIR SINE MIR 40 250 -12 783 89 0 8 chr9 83506201 83506325 -34356302 - L1P LINE L1 -3266 2880 2758 200 231 179 26 chr9 83506342 83506420 -34356207 - MIR SINE MIR -155 107 18 307 290 0 20 chr9 83506468 83506568 -34356059 + L1M4 LINE L1 5114 5211 -935 274 226 36 0 chr9 83506603 83506687 -34355940 + L1MC5 LINE L1 7333 7419 -542 273 237 144 25 chr9 83506894 83507012 -34355615 + LTR16B LTR ERVL 333 464 0 244 375 31 0 chr9 83507361 83507457 -34355170 + L2 LINE L2 3174 3272 0 1952 156 60 28 chr9 83510662 83511189 -34351438 + MLT2A2 LTR ERVL 1 554 0 213 340 74 19 chr9 83511917 83512079 -34350548 - MIR SINE MIR -1 261 91 872 253 135 90 chr9 83512222 83513061 -34349566 - L2 LINE L2 -4 3309 2427 240 337 45 40 chr9 83513190 83513389 -34349238 + L2 LINE L2 2334 2533 -781 3109 152 71 16 chr9 83514553 83515200 -34347427 - MER67C LTR ERV1 -6 704 22 190 254 51 17 chr9 83515469 83515528 -34347099 + MIR SINE MIR 83 143 -119 447 237 53 35 chr9 83515538 83515707 -34346920 - MER104 DNA Tc2 -5 175 4 243 336 55 0 chr9 83515711 83515821 -34346806 + MIR SINE MIR 147 262 0 355 304 54 86 chr9 83515989 83516492 -34346135 - L1M4 LINE L1 -2828 3318 2832 526 258 16 16 chr9 83516819 83517013 -34345614 - L1ME2 LINE L1 -10 6154 5961 361 309 91 19 chr9 83517727 83517937 -34344690 - MLT1L LTR MaLR -82 533 309 46 68 0 0 chr9 83518521 83518609 -34344018 + AT_rich Low_complexity Low_complexity 1 88 0 539 200 12 2 chr9 83518708 83518854 -34343773 - L1ME2 LINE L1 -2 6160 6013 210 37 0 0 chr9 83519000 83519027 -34343600 + (CA)n Simple_repeat Simple_repeat 2 28 0 2198 135 3 0 chr9 83519087 83519391 -34343236 + AluSx SINE Alu 1 305 -7 259 278 56 0 chr9 83519520 83519610 -34343017 - L1ME2 LINE L1 -456 5706 5612 23 0 0 0 chr9 83521915 83521938 -34340689 + AT_rich Low_complexity Low_complexity 1 23 0 379 370 83 16 chr9 83522847 83523220 -34339407 + L2 LINE L2 2454 2851 -463 530 320 21 21 chr9 83523421 83523615 -34339012 - MIR SINE MIR -48 214 21 304 353 25 8 chr9 83523682 83523801 -34338826 + L2 LINE L2 3134 3254 -18 282 112 0 0 chr9 83524021 83524072 -34338555 - MIR SINE MIR -85 123 72 277 352 70 28 chr9 83524210 83524352 -34338275 + L2 LINE L2 3124 3271 -1 322 188 77 9 chr9 83524650 83524740 -34337887 + MIR SINE MIR 31 123 -85 2019 173 0 3 chr9 83524870 83525183 -34337444 - AluSx SINE Alu 0 312 1 251 280 43 11 chr9 83525184 83525277 -34337350 + MIR SINE MIR 45 140 -68 1313 276 124 1 chr9 83525426 83525992 -34336635 - L2 LINE L2 -2 3311 2667 380 312 75 25 chr9 83526153 83526451 -34336176 - L2 LINE L2 -256 3016 2699 192 362 86 7 chr9 83526551 83526703 -34335924 + L2 LINE L2 2478 2641 -673 2377 77 3 0 chr9 83526763 83527063 -34335564 - AluY SINE Alu -10 301 1 416 258 40 0 chr9 83527084 83527208 -34335419 - MER94 DNA DNA -4 130 2 317 204 0 19 chr9 83527572 83527675 -34334952 + GA-rich Low_complexity Low_complexity 2 102 0 408 304 93 49 chr9 83528233 83528726 -34333901 + LTR33 LTR ERVL 1 515 -6 2188 99 3 3 chr9 83529099 83529392 -34333235 + AluSq SINE Alu 1 293 -20 1896 171 5 76 chr9 83529436 83529856 -34332771 + MLT1B LTR MaLR 1 390 0 2373 138 26 30 chr9 83530216 83530643 -34331984 - MSTA LTR MaLR -3 425 1 1460 208 40 78 chr9 83531170 83531695 -34330932 + MLT1D LTR MaLR 1 505 0 602 237 60 52 chr9 83531761 83532010 -34330617 + LTR33 LTR ERVL 269 519 -2 1152 245 33 19 chr9 83532598 83532961 -34329666 + L1M4 LINE L1 3750 4117 -2029 1742 137 63 20 chr9 83533195 83533494 -34329133 + AluSx SINE Alu 1 312 0 2371 103 7 0 chr9 83533939 83534249 -34328378 + AluSq SINE Alu 1 312 -1 2261 106 0 3 chr9 83534713 83535006 -34327621 - AluSx SINE Alu -20 292 1 1329 158 32 16 chr9 83536782 83537087 -34325540 + MER61B LTR ERV1 1 396 -28 4307 102 28 158 chr9 83537356 83538914 -34323713 - pTR5 LTR ERV1 0 2606 1524 842 144 22 0 chr9 83539426 83539565 -34323062 - LTR12 LTR ERV1 -234 480 339 280 197 0 0 chr9 83539565 83539626 -34323001 - LTR30 LTR ERV1 -118 604 544 676 136 46 117 chr9 83539626 83539853 -34322774 - LTR12 LTR ERV1 -437 277 1 605 293 146 0 chr9 83539861 83540066 -34322561 - MIR SINE MIR -25 237 3 2073 155 82 15 chr9 83540230 83540631 -34321996 + MSTA LTR MaLR 1 428 0 39 22 0 0 chr9 83540636 83540682 -34321945 + AT_rich Low_complexity Low_complexity 1 46 0 392 272 17 81 chr9 83541507 83541680 -34320947 + MIR SINE MIR 86 247 -15 425 313 3 5 chr9 83541740 83541878 -34320749 - MER5B DNA MER1_type -13 173 40 204 40 0 0 chr9 83541990 83542015 -34320612 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 225 94 0 0 chr9 83542106 83542138 -34320489 + (CAAT)n Simple_repeat Simple_repeat 2 33 0 280 346 39 0 chr9 83542275 83542379 -34320248 + MIR SINE MIR 39 146 -62 334 299 65 9 chr9 83542612 83542719 -34319908 + L2 LINE L2 3160 3272 0 220 179 105 126 chr9 83543496 83543531 -34319096 - MER5A DNA MER1_type -88 101 67 2308 100 0 0 chr9 83543531 83543821 -34318806 - AluSc SINE Alu -19 290 1 220 179 105 126 chr9 83543821 83543880 -34318747 - MER5A DNA MER1_type -122 67 9 2017 113 17 14 chr9 83543951 83544280 -34318347 - AluSx SINE Alu 0 312 1 28 61 0 0 chr9 83544758 83544807 -34317820 + AT_rich Low_complexity Low_complexity 1 49 0 522 221 90 8 chr9 83545793 83545915 -34316712 - MER5B DNA MER1_type 0 178 47 543 315 112 55 chr9 83546069 83546103 -34316524 + L1ME LINE L1 20 51 -6019 1921 103 103 35 chr9 83546103 83546444 -34316183 + THE1B LTR MaLR 1 364 0 11218 100 22 3 chr9 83546444 83547995 -34314632 + THE1B-int LTR MaLR 1 1580 0 1866 132 48 67 chr9 83547995 83548366 -34314261 + THE1B LTR MaLR 1 364 0 543 315 112 55 chr9 83548366 83548802 -34313825 + L1ME LINE L1 50 519 -5551 690 264 90 23 chr9 83548972 83549631 -34312996 + L1ME LINE L1 510 1256 -5005 2179 83 6 19 chr9 83549705 83550019 -34312608 - AluY SINE Alu -1 310 1 255 307 10 40 chr9 83550039 83550140 -34312487 + L2 LINE L2 2365 2462 -852 1788 219 16 48 chr9 83550145 83550662 -34311965 - MLT1D LTR MaLR -5 500 1 337 294 46 9 chr9 83550700 83550809 -34311818 + L2 LINE L2 2499 2611 -703 193 322 78 26 chr9 83550815 83550930 -34311697 + L2 LINE L2 2948 3068 -245 293 272 57 83 chr9 83551004 83551127 -34311500 - LTR33A LTR ERVL -4 519 403 2290 107 0 7 chr9 83551127 83551437 -34311190 + AluSx SINE Alu 1 308 -4 293 272 57 83 chr9 83551437 83551541 -34311086 - LTR33A LTR ERVL -120 403 298 336 379 35 12 chr9 83552330 83552499 -34310128 + MIR SINE MIR 21 193 -69 7285 37 29 0 chr9 83553375 83554247 -34308380 - MER11D LTR ERVK 0 897 1 2846 121 11 26 chr9 83554262 83554614 -34308013 - L1M2 LINE L1 -598 5714 5367 2211 120 0 0 chr9 83554614 83554923 -34307704 - AluSg1 SINE Alu 0 309 1 2846 121 11 26 chr9 83554923 83555188 -34307439 - L1M2 LINE L1 -945 5367 5100 2781 130 13 103 chr9 83555188 83555797 -34306830 + L1MA7 LINE L1 5726 6284 -7 969 234 30 30 chr9 83556799 83557078 -34305549 - L1MDa LINE L1 -2820 3720 3439 2006 95 9 80 chr9 83557078 83557403 -34305224 - AluSq SINE Alu -11 302 1 969 234 30 30 chr9 83557403 83557487 -34305140 - L1MDa LINE L1 -3100 3440 3357 * 4765 166 24 10 chr9 83557482 83558367 -34304260 - L1MB3 LINE L1 -2 6181 5285 4632 198 96 44 chr9 83558369 83560343 -34302284 - L1MDa LINE L1 -3171 3369 1286 833 123 92 6 chr9 83560343 83560506 -34302121 - L1MA7 LINE L1 -5 6286 6110 4632 198 96 44 chr9 83560506 83560589 -34302038 - L1MDa LINE L1 -5254 1286 1209 22 35 0 0 chr9 83561812 83561841 -34300786 + AT_rich Low_complexity Low_complexity 1 29 0 1596 196 25 49 chr9 83561889 83562256 -34300371 - MLT1A2 LTR MaLR -16 358 1 29 60 0 0 chr9 83562297 83562347 -34300280 + AT_rich Low_complexity Low_complexity 1 50 0 2190 86 4 0 chr9 83565179 83565457 -34297170 - AluY SINE Alu -7 304 26 415 325 13 25 chr9 83565518 83565675 -34296952 + MER5A DNA MER1_type 35 189 0 637 228 60 0 chr9 83566925 83567092 -34295535 + L1M4 LINE L1 4783 4959 -1187 209 268 28 14 chr9 83567330 83567401 -34295226 + MIR SINE MIR 92 163 -99 544 238 87 52 chr9 83568861 83569074 -34293553 + L1MCa LINE L1 988 1213 -5213 1762 149 14 0 chr9 83569074 83569350 -34293277 + AluSx SINE Alu 10 289 -23 544 238 87 52 chr9 83569350 83569388 -34293239 + L1MCa LINE L1 1213 1248 -5178 2547 153 26 0 chr9 83570439 83570856 -34291771 - MSTA LTR MaLR 0 428 1 28 0 0 0 chr9 83572169 83572197 -34290430 + AT_rich Low_complexity Low_complexity 1 28 0 489 318 63 18 chr9 83572246 83572469 -34290158 + MIR SINE MIR 20 252 -10 1954 111 49 10 chr9 83572710 83572998 -34289629 - AluSq SINE Alu -14 299 1 376 265 257 0 chr9 83573275 83573411 -34289216 + MER5A DNA MER1_type 13 183 -6 772 217 11 44 chr9 83573418 83573598 -34289029 - MER5B DNA MER1_type 0 178 5 263 139 0 0 chr9 83573740 83573783 -34288844 + L1MD2 LINE L1 6287 6329 -30 328 219 94 39 chr9 83574422 83574550 -34288077 - L1MC/D LINE L1 -2332 5476 5342 2119 100 4 0 chr9 83575631 83575932 -34286695 + AluSx SINE Alu 1 302 0 30 97 0 0 chr9 83575938 83576031 -34286596 + AT_rich Low_complexity Low_complexity 1 93 0 850 143 0 0 chr9 83576179 83576305 -34286322 + AluJb SINE Alu 174 299 -13 239 111 0 22 chr9 83577175 83577220 -34285407 + (TTCTCC)n Simple_repeat Simple_repeat 3 46 0 197 257 0 0 chr9 83577456 83577491 -34285136 + L2 LINE L2 3189 3223 -90 2107 122 0 3 chr9 83577536 83577822 -34284805 + AluSx SINE Alu 2 286 -26 22 0 0 0 chr9 83578469 83578491 -34284136 + AT_rich Low_complexity Low_complexity 1 22 0 25 95 0 0 chr9 83578559 83578633 -34283994 + AT_rich Low_complexity Low_complexity 1 74 0 224 390 47 35 chr9 83578644 83578816 -34283811 + L2 LINE L2 2910 3083 -189 189 293 155 0 chr9 83579277 83579335 -34283292 + MER5A DNA MER1_type 120 186 -3 2511 72 3 0 chr9 83579981 83580286 -34282341 + AluSp SINE Alu 1 306 -7 390 369 97 5 chr9 83580957 83581152 -34281475 - MIR SINE MIR -40 222 10 277 257 29 0 chr9 83582177 83582247 -34280380 - MIR SINE MIR -116 146 75 283 371 69 19 chr9 83583837 83583996 -34278631 - L2 LINE L2 -181 3091 2925 189 337 101 47 chr9 83584466 83584635 -34277992 - MER5A DNA MER1_type -10 179 2 304 321 28 60 chr9 83584949 83585167 -34277460 + L2 LINE L2 2873 3083 -189 412 349 110 9 chr9 83585653 83585871 -34276756 + MIR SINE MIR 20 259 -3 647 86 75 0 chr9 83586180 83586273 -34276354 + MSTB LTR MaLR 1 100 -326 1720 118 0 8 chr9 83586274 83586519 -34276108 - AluSq SINE Alu -70 243 1 1404 107 0 5 chr9 83588102 83588316 -34274311 + AluSg/x SINE Alu 96 308 0 21 36 0 0 chr9 83588478 83588506 -34274121 + AT_rich Low_complexity Low_complexity 1 28 0 34 18 0 36 chr9 83588822 83588852 -34273775 + AT_rich Low_complexity Low_complexity 1 30 -24 10033 77 9 27 chr9 83588852 83590241 -34272386 - SVA Other Other -5 1381 17 34 18 0 36 chr9 83590241 83590266 -34272361 + AT_rich Low_complexity Low_complexity 30 54 0 258 160 0 0 chr9 83591630 83591680 -34270947 + GA-rich Low_complexity Low_complexity 3 52 0 2709 147 29 4 chr9 83591871 83592327 -34270300 + MLT1C LTR MaLR 1 467 0 521 107 50 0 chr9 83592559 83592699 -34269928 + (TA)n Simple_repeat Simple_repeat 1 147 0 1337 89 0 0 chr9 83592702 83592870 -34269757 + AluSp SINE Alu 123 290 -23 438 193 0 0 chr9 83592870 83593036 -34269591 + (TA)n Simple_repeat Simple_repeat 1 166 0 222 191 32 0 chr9 83593037 83593100 -34269527 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 517 179 0 11 chr9 83593220 83593399 -34269228 + (TA)n Simple_repeat Simple_repeat 2 178 0 231 211 0 0 chr9 83593416 83593511 -34269116 + (TA)n Simple_repeat Simple_repeat 2 96 0 267 268 0 0 chr9 83593527 83593779 -34268848 + (TA)n Simple_repeat Simple_repeat 1 252 0 2113 84 11 7 chr9 83593789 83594076 -34268551 - AluSq SINE Alu -23 290 3 24 53 0 0 chr9 83594296 83594334 -34268293 + AT_rich Low_complexity Low_complexity 1 38 0 249 122 0 0 chr9 83594523 83594564 -34268063 - L1MA9 LINE L1 -4 6308 6268 1643 133 9 0 chr9 83594804 83595037 -34267590 + AluSg/x SINE Alu 71 305 -7 608 176 9 0 chr9 83595851 83595959 -34266668 + MLT1B LTR MaLR 1 109 -281 684 213 0 0 chr9 83595959 83596081 -34266546 + AluJo/FLAM SINE Alu 1 122 -190 2458 30 7 30 chr9 83596081 83596385 -34266242 - AluY SINE Alu -14 297 1 1235 213 19 64 chr9 83596393 83596707 -34265920 + MLT1B LTR MaLR 91 390 0 2551 46 3 7 chr9 83597403 83597710 -34264917 + AluY SINE Alu 1 306 -5 254 371 88 56 chr9 83597825 83598221 -34264406 + L2 LINE L2 2844 3252 -20 210 365 40 0 chr9 83599214 83599340 -34263287 - MIR3 SINE MIR 0 208 78 2050 257 48 24 chr9 83599352 83599735 -34262892 + L1M4 LINE L1 4044 4416 -1730 2255 103 7 0 chr9 83599735 83600035 -34262592 - AluSx SINE Alu -9 303 2 2050 257 48 24 chr9 83600035 83600448 -34262179 + L1M4 LINE L1 4416 4859 -1287 3974 67 0 6 chr9 83600457 83600977 -34261650 - L1PA8 LINE L1 0 6172 5656 2358 75 3 23 chr9 83601157 83601463 -34261164 - AluSc SINE Alu -9 300 1 433 315 73 6 chr9 83601810 83601988 -34260639 - MIR SINE MIR -8 254 65 228 67 0 0 chr9 83605094 83605124 -34257503 + (CA)n Simple_repeat Simple_repeat 2 31 0 2327 71 3 0 chr9 83605242 83605548 -34257079 - AluY SINE Alu 0 307 1 429 176 0 0 chr9 83607028 83607113 -34255514 - L1MA7 LINE L1 -2 6289 6205 9202 216 11 5 chr9 83607124 83610024 -34252603 - L1PA16 LINE L1 0 6166 3246 1920 73 0 42 chr9 83610977 83611236 -34251391 + AluY SINE Alu 49 296 -15 2302 92 17 0 chr9 83611291 83611584 -34251043 + AluSg SINE Alu 1 298 -12 211 329 26 26 chr9 83611736 83611812 -34250815 - MIR SINE MIR -64 144 69 447 242 72 125 chr9 83612364 83612628 -34249999 - MIR SINE MIR -10 252 3 2205 128 9 105 chr9 83612855 83613302 -34249325 + Tigger2a DNA MER2_type 2 405 -29 33 73 0 0 chr9 83613446 83613514 -34249113 + AT_rich Low_complexity Low_complexity 1 68 0 327 348 9 43 chr9 83613625 83613835 -34248792 + L2 LINE L2 3106 3308 -5 5280 117 40 5 chr9 83614073 83615189 -34247438 + L1PA16 LINE L1 5002 6157 -9 318 345 93 20 chr9 83615190 83615535 -34247092 + L1M4 LINE L1 3968 4337 -1809 25 0 0 0 chr9 83615747 83615772 -34246855 + AT_rich Low_complexity Low_complexity 1 25 0 207 100 0 0 chr9 83616301 83616331 -34246296 + (A)n Simple_repeat Simple_repeat 1 30 0 267 104 0 0 chr9 83616736 83616784 -34245843 + (TA)n Simple_repeat Simple_repeat 2 49 0 318 227 45 11 chr9 83616784 83616872 -34245755 - L1MC4 LINE L1 -1338 6704 6614 407 318 78 16 chr9 83617288 83617609 -34245018 + HAL1b LINE L1 259 599 -749 615 314 87 42 chr9 83617801 83618307 -34244320 + L1MEc LINE L1 37 565 -5831 524 231 14 34 chr9 83618399 83618546 -34244081 - LTR19C LTR ERV1 0 779 636 252 77 0 0 chr9 83618560 83618599 -34244028 + (GA)n Simple_repeat Simple_repeat 1 39 0 1664 190 53 12 chr9 83618613 83618955 -34243672 - MLT2D LTR ERVL -58 356 1 1000 225 41 59 chr9 83618955 83619275 -34243352 + L1MD2 LINE L1 6034 6347 -12 9624 103 15 6 chr9 83619309 83620664 -34241963 + L1P3 LINE L1 10 1376 -5085 342 272 0 0 chr9 83620664 83620745 -34241882 - MER58 DNA MER1_type -2313 107 27 846 199 51 74 chr9 83620768 83621079 -34241548 + L1MC4 LINE L1 7738 8041 -1 24 53 0 0 chr9 83621186 83621224 -34241403 + AT_rich Low_complexity Low_complexity 1 38 0 198 0 0 0 chr9 83621242 83621264 -34241363 + (CA)n Simple_repeat Simple_repeat 2 23 0 21 36 0 0 chr9 83621376 83621404 -34241223 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr9 83621601 83621633 -34240994 + AT_rich Low_complexity Low_complexity 1 32 0 233 333 30 10 chr9 83623073 83623172 -34239455 - MIR SINE MIR -68 194 94 250 179 60 0 chr9 83623513 83623580 -34239047 - L1MA7 LINE L1 0 6291 6221 892 129 7 7 chr9 83623580 83623719 -34238908 - THE1B LTR MaLR 0 364 226 317 50 0 0 chr9 83623716 83623756 -34238871 - THE1B LTR MaLR -324 40 1 * 10486 102 50 3 chr9 83623756 83625265 -34237362 - THE1B-int LTR MaLR 0 1580 1 2203 145 20 8 chr9 83625267 83625625 -34237002 - THE1B LTR MaLR -2 362 1 338 320 177 0 chr9 83627654 83627801 -34234826 - MER5A DNA MER1_type -6 183 11 223 343 14 0 chr9 83629897 83629970 -34232657 + L2 LINE L2 3211 3284 -29 193 282 19 58 chr9 83630275 83630378 -34232249 + MIR SINE MIR 114 212 -50 242 269 98 31 chr9 83631557 83631707 -34230920 - MIR3 SINE MIR -10 198 41 1222 180 0 36 chr9 83633464 83633686 -34228941 - AluJo SINE Alu -21 291 78 336 226 85 43 chr9 83633956 83634120 -34228507 + L1MC5 LINE L1 7737 7907 -54 249 292 0 0 chr9 83634161 83634233 -34228394 + (TA)n Simple_repeat Simple_repeat 1 72 0 37 76 0 0 chr9 83634509 83634588 -34228039 + AT_rich Low_complexity Low_complexity 1 79 0 201 358 12 0 chr9 83634793 83634874 -34227753 - MIR SINE MIR -105 157 76 610 110 0 2 chr9 83637186 83637431 -34225196 - AluSc SINE Alu -14 295 2 343 257 79 0 chr9 83637452 83637553 -34225074 - MER5A DNA MER1_type -72 117 9 501 173 5 49 chr9 83638722 83638907 -34223720 + GA-rich Low_complexity Low_complexity 4 180 0 183 316 18 0 chr9 83638918 83638975 -34223652 - L2 LINE L2 -1 3271 3214 189 324 44 0 chr9 83639365 83639433 -34223194 + L2 LINE L2 3169 3239 -33 203 213 64 0 chr9 83639753 83639800 -34222827 + MIR SINE MIR 117 166 -96 282 353 25 8 chr9 83640981 83641100 -34221527 - MIR3 SINE MIR -6 202 82 431 82 0 0 chr9 83641150 83641211 -34221416 + L1MD3 LINE L1 7919 7979 -16 21 36 0 0 chr9 83641212 83641240 -34221387 + AT_rich Low_complexity Low_complexity 1 28 0 226 319 97 18 chr9 83641261 83641374 -34221253 - MIR3 SINE MIR -2 206 85 738 146 8 0 chr9 83641434 83641564 -34221063 + L1MA5A LINE L1 6155 6285 -12 1990 144 13 0 chr9 83641564 83641862 -34220765 - AluSx SINE Alu -10 302 1 198 0 0 0 chr9 83641865 83641887 -34220740 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 2217 112 3 6 chr9 83641970 83642282 -34220345 + AluSq SINE Alu 1 311 -2 453 182 168 50 chr9 83642311 83642531 -34220096 + Charlie2 DNA MER1_type 2244 2489 -373 24 0 0 0 chr9 83642577 83642601 -34220026 + AT_rich Low_complexity Low_complexity 1 24 0 182 318 32 0 chr9 83642642 83642705 -34219922 - L2 LINE L2 -10 3262 3198 23 0 0 0 chr9 83642845 83642868 -34219759 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr9 83642963 83642989 -34219638 + AT_rich Low_complexity Low_complexity 1 26 0 1937 135 20 7 chr9 83643906 83644202 -34218425 + AluSx SINE Alu 1 300 -12 1661 187 133 0 chr9 83644869 83645329 -34217298 - L1 LINE L1 -2500 3646 3126 6358 172 53 49 chr9 83645329 83646114 -34216513 + L1MA9 LINE L1 3682 4462 -1850 513 95 0 0 chr9 83646114 83646188 -34216439 - MADE1 DNA Mariner -6 74 1 6358 172 53 49 chr9 83646188 83646865 -34215762 + L1MA9 LINE L1 4462 5134 -1178 2214 176 34 2 chr9 83646865 83647280 -34215347 - MSTC LTR MaLR 0 428 1 6358 172 53 49 chr9 83647280 83648295 -34214332 + L1MA9 LINE L1 5134 6250 -62 1438 176 120 71 chr9 83648295 83648703 -34213924 + MSTA LTR MaLR 1 428 0 6358 172 53 49 chr9 83648703 83648761 -34213866 + L1MA9 LINE L1 6250 6306 -6 1480 214 47 62 chr9 83648793 83649195 -34213432 + MSTD LTR MaLR 1 396 0 252 309 92 13 chr9 83649678 83649830 -34212797 + MER4B-int LTR ERV1 4605 4768 -1990 1972 207 30 22 chr9 83651747 83652210 -34210417 - MLT1C LTR MaLR 0 467 1 21 0 0 0 chr9 83653080 83653101 -34209526 + AT_rich Low_complexity Low_complexity 1 21 0 292 202 0 53 chr9 83653591 83653685 -34208942 + L1MA4A LINE L1 2399 2487 -3659 4814 189 39 16 chr9 83653712 83655741 -34206886 + L1MA4A LINE L1 3922 6015 -288 * 5570 139 15 13 chr9 83655716 83656916 -34205711 + L1PB1 LINE L1 1 1398 -5465 2183 85 31 0 chr9 83656917 83657210 -34205417 + PABL_A LTR ERV1 2 303 -357 531 121 110 0 chr9 83657212 83657303 -34205324 + L1PB1 LINE L1 2871 2971 -3892 333 172 0 0 chr9 83657315 83657373 -34205254 - L1 LINE L1 -3123 3023 2966 * 6021 158 31 57 chr9 83657361 83657788 -34204839 + L1PB1 LINE L1 4523 4960 -1907 3197 66 5 7 chr9 83657788 83658210 -34204417 + L1PA8 LINE L1 5748 6170 -2 6021 158 31 57 chr9 83658210 83658256 -34204371 + L1PB1 LINE L1 4960 5006 -1861 2127 113 0 3 chr9 83658256 83658566 -34204061 + AluSq SINE Alu 1 309 0 6021 158 31 57 chr9 83658566 83659697 -34202930 + L1PB1 LINE L1 5006 6065 -802 2176 121 3 0 chr9 83659697 83659994 -34202633 + AluSx SINE Alu 3 300 -12 6021 158 31 57 chr9 83659994 83660777 -34201850 + L1PB1 LINE L1 6065 6867 0 1829 130 11 66 chr9 83660811 83660890 -34201737 + L1MA4A LINE L1 5956 6038 -265 2186 120 0 0 chr9 83660890 83661181 -34201446 + AluSg1 SINE Alu 1 291 -18 1829 130 11 66 chr9 83661181 83661463 -34201164 + L1MA4A LINE L1 6038 6297 -6 26 0 0 0 chr9 83661466 83661492 -34201135 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr9 83661577 83661605 -34201022 + AT_rich Low_complexity Low_complexity 1 28 0 231 356 82 0 chr9 83661778 83661913 -34200714 + MIR SINE MIR 66 211 -51 32 43 0 0 chr9 83664198 83664244 -34198383 + AT_rich Low_complexity Low_complexity 1 46 0 234 91 0 0 chr9 83665442 83665475 -34197152 + (T)n Simple_repeat Simple_repeat 1 33 0 315 293 50 64 chr9 83665580 83665863 -34196764 - L1 LINE L1 -1479 4667 4389 270 352 0 0 chr9 83665988 83666079 -34196548 - L1 LINE L1 -1989 4157 4067 2264 99 0 0 chr9 83666095 83666403 -34196224 + AluSx SINE Alu 1 308 0 229 274 21 0 chr9 83666522 83666617 -34196010 - L1 LINE L1 -2186 3960 3864 24 32 0 0 chr9 83667148 83667179 -34195448 + AT_rich Low_complexity Low_complexity 1 31 0 779 159 167 75 chr9 83667352 83667604 -34195023 + ORSL DNA AcHobo 1 275 0 310 258 81 124 chr9 83667736 83667917 -34194710 - Charlie8 DNA MER1_type -66 275 109 2335 60 3 13 chr9 83667917 83668219 -34194408 + AluY SINE Alu 1 299 -12 310 258 81 124 chr9 83668219 83668320 -34194307 - Charlie8 DNA MER1_type -232 109 5 2082 127 0 0 chr9 83669696 83669988 -34192639 + AluSx SINE Alu 1 292 -20 588 243 16 53 chr9 83670216 83670405 -34192222 + L2 LINE L2 3128 3309 -4 197 310 28 0 chr9 83671163 83671234 -34191393 + MIR SINE MIR 187 259 -3 736 253 123 38 chr9 83671325 83671586 -34191041 + LTR50 LTR ERVL 16 298 -497 30 27 0 0 chr9 83671889 83671926 -34190701 + AT_rich Low_complexity Low_complexity 1 37 0 1451 275 31 47 chr9 83671926 83672505 -34190122 + L1M4c LINE L1 1211 1780 -4604 1899 136 177 11 chr9 83673402 83673769 -34188858 + MSTA LTR MaLR 1 428 0 642 316 77 44 chr9 83674287 83674676 -34187951 + MLT1I LTR MaLR 1 402 -7 365 309 0 65 chr9 83674881 83675020 -34187607 + MER91B DNA MER1_type 1 130 -60 207 385 22 0 chr9 83675039 83675130 -34187497 + MER91B DNA MER1_type 97 189 -1 270 328 100 11 chr9 83675131 83675311 -34187316 + L1MEd LINE L1 564 759 -5360 23 78 0 0 chr9 83675337 83675388 -34187239 + AT_rich Low_complexity Low_complexity 1 51 0 510 271 62 4 chr9 83675433 83675677 -34186950 + L1MEd LINE L1 2230 2487 -3642 237 269 29 29 chr9 83675761 83675865 -34186762 + L1MEd LINE L1 2647 2750 -3379 222 274 0 0 chr9 83676403 83676454 -34186173 + GA-rich Low_complexity Low_complexity 4 54 0 342 287 52 29 chr9 83677070 83677206 -34185421 + MIR SINE MIR 1 139 -123 277 357 96 6 chr9 83678028 83678185 -34184442 - MIR SINE MIR -72 190 20 346 339 0 0 chr9 83680272 83680393 -34182234 - L2 LINE L2 -578 2736 2616 369 120 0 8 chr9 83680444 83680512 -34182115 - L1MA9 LINE L1 -61 6238 6167 847 142 64 0 chr9 83680582 83680723 -34181904 - AluJb SINE Alu -78 234 85 648 100 36 0 chr9 83680725 83680835 -34181792 - L1MA9 LINE L1 -257 6055 5942 588 335 85 0 chr9 83681529 83681741 -34180886 - MIR SINE MIR -15 247 18 237 33 0 0 chr9 83681984 83682014 -34180613 + (A)n Simple_repeat Simple_repeat 1 30 0 2194 91 0 14 chr9 83682019 83682306 -34180321 + AluSg SINE Alu 16 298 -12 242 157 20 0 chr9 83682377 83682428 -34180199 + (TA)n Simple_repeat Simple_repeat 1 52 0 407 331 84 6 chr9 83682438 83682616 -34180011 + L3 LINE CR1 1374 1565 -12 430 300 21 11 chr9 83682769 83682959 -34179668 + L1ME4a LINE L1 5705 5896 -225 269 303 34 0 chr9 83683038 83683127 -34179500 + L2 LINE L2 3179 3270 -2 328 322 89 40 chr9 83683654 83683856 -34178771 + L1ME LINE L1 5608 5819 -302 27 0 0 0 chr9 83684775 83684802 -34177825 + AT_rich Low_complexity Low_complexity 1 27 0 407 91 0 0 chr9 83685533 83685588 -34177039 - L1P3 LINE L1 -6394 67 13 189 0 0 0 chr9 83685616 83685637 -34176990 + (A)n Simple_repeat Simple_repeat 1 21 0 294 255 89 58 chr9 83686619 83686878 -34175749 - L1ME4a LINE L1 -109 6012 5746 22 80 0 0 chr9 83687141 83687191 -34175436 + AT_rich Low_complexity Low_complexity 1 50 0 2012 144 7 0 chr9 83687645 83687943 -34174684 + AluSx SINE Alu 1 300 -12 428 253 207 7 chr9 83688592 83688742 -34173885 + MER5A DNA MER1_type 9 188 -1 249 282 0 51 chr9 83688754 83688832 -34173795 - MER5B DNA MER1_type -3 175 102 342 347 28 35 chr9 83689120 83689264 -34173363 + MER5A DNA MER1_type 4 146 -43 181 354 44 71 chr9 83690760 83691054 -34171573 + L2 LINE L2 2810 3095 -177 1585 153 0 8 chr9 83692294 83692535 -34170092 - AluJb SINE Alu -73 239 1 622 312 57 34 chr9 83692605 83693270 -34169357 - L1M3de LINE L1 -4598 1942 1307 278 235 148 27 chr9 83693295 83693444 -34169183 - L1MCc LINE L1 -4974 1449 1283 483 256 31 39 chr9 83694269 83694398 -34168229 + L2 LINE L2 3137 3264 -8 1333 261 86 29 chr9 83694417 83694869 -34167758 + MER74A LTR ERVL 11 488 -70 345 242 53 11 chr9 83694786 83694881 -34167746 - MER88 LTR ERVL -287 177 79 * 1627 201 41 0 chr9 83696105 83696424 -34166203 - MER7A DNA MER2_type -15 331 2 22 0 0 0 chr9 83696639 83696661 -34165966 + AT_rich Low_complexity Low_complexity 1 22 0 2024 163 18 5 chr9 83697319 83697706 -34164921 + L1 LINE L1 4428 4819 -1327 217 296 0 56 chr9 83698956 83699057 -34163570 + GA-rich Low_complexity Low_complexity 2 96 -23 225 0 0 0 chr9 83699057 83699082 -34163545 + (TGAA)n Simple_repeat Simple_repeat 2 26 0 217 296 0 56 chr9 83699082 83699105 -34163522 + GA-rich Low_complexity Low_complexity 96 119 0 481 289 72 6 chr9 83699130 83699296 -34163331 - MIR SINE MIR -66 196 20 412 289 102 30 chr9 83699413 83699579 -34163048 + L2 LINE L2 3129 3306 -7 669 244 8 84 chr9 83699616 83699854 -34162773 - MIR SINE MIR -25 237 18 2162 119 0 0 chr9 83700602 83700954 -34161673 - AluSx SINE Alu 0 352 1 28 48 0 0 chr9 83701365 83701407 -34161220 + AT_rich Low_complexity Low_complexity 1 42 0 194 341 52 35 chr9 83701544 83701717 -34160910 + MIR SINE MIR 20 195 -67 214 119 0 68 chr9 83702136 83702195 -34160432 + (CA)n Simple_repeat Simple_repeat 2 56 0 278 306 7 28 chr9 83705170 83705314 -34157313 + GA-rich Low_complexity Low_complexity 3 143 0 471 265 78 12 chr9 83705339 83705505 -34157122 - MIR SINE MIR -66 196 20 394 296 81 12 chr9 83705624 83705796 -34156831 + L2 LINE L2 3129 3312 -1 720 237 8 89 chr9 83705827 83706063 -34156564 - MIR SINE MIR -25 237 21 180 305 17 17 chr9 83706014 83706073 -34156554 + MIR SINE MIR 20 78 -184 * 447 261 85 12 chr9 83707167 83707332 -34155295 - MIR SINE MIR -66 196 20 394 296 81 12 chr9 83707451 83707623 -34155004 + L2 LINE L2 3129 3312 -1 720 237 8 89 chr9 83707654 83707890 -34154737 - MIR SINE MIR -25 237 21 180 305 17 17 chr9 83707841 83707900 -34154727 + MIR SINE MIR 20 78 -184 * 25 0 0 68 chr9 83708608 83708652 -34153975 + AT_rich Low_complexity Low_complexity 1 41 0 1914 151 13 0 chr9 83708652 83708951 -34153676 - AluSx SINE Alu -9 303 1 28 0 0 0 chr9 83709109 83709137 -34153490 + AT_rich Low_complexity Low_complexity 1 28 0 580 296 48 39 chr9 83709243 83709664 -34152963 - L1MEc LINE L1 -3676 2539 2161 22 94 0 0 chr9 83710275 83710339 -34152288 + AT_rich Low_complexity Low_complexity 1 64 0 636 271 120 28 chr9 83710495 83710820 -34151807 + L1MC4a LINE L1 5578 5932 -1876 183 205 0 0 chr9 83710821 83710860 -34151767 + (TA)n Simple_repeat Simple_repeat 1 39 0 21 0 0 0 chr9 83711010 83711031 -34151596 + AT_rich Low_complexity Low_complexity 1 21 0 183 255 0 0 chr9 83711380 83711431 -34151196 + MIR SINE MIR 212 262 0 460 269 124 36 chr9 83711819 83712012 -34150615 + MIR SINE MIR 10 219 -43 1002 48 0 0 chr9 83712416 83712540 -34150087 - L1PA5 LINE L1 -2 6152 6029 258 56 0 0 chr9 83713935 83713971 -34148656 + (TC)n Simple_repeat Simple_repeat 1 36 0 1673 160 7 3 chr9 83714069 83714356 -34148271 + MER47A DNA MER2_type 46 333 -33 354 287 29 7 chr9 83714411 83714547 -34148080 + GA-rich Low_complexity Low_complexity 4 142 0 32 43 0 0 chr9 83714763 83714809 -34147818 + AT_rich Low_complexity Low_complexity 1 46 0 401 326 34 50 chr9 83714920 83715159 -34147468 - L1MC/D LINE L1 -2305 5503 5269 203 407 12 0 chr9 83715313 83715394 -34147233 - L2 LINE L2 -85 3187 3106 466 162 0 0 chr9 83715436 83715504 -34147123 - LTR1 LTR ERV1 0 785 718 415 32 0 32 chr9 83715623 83715686 -34146941 + (CA)n Simple_repeat Simple_repeat 2 62 0 6991 56 7 0 chr9 83716051 83716942 -34145685 + L1PA6 LINE L1 5254 6150 -4 24 0 0 0 chr9 83719502 83719526 -34143101 + AT_rich Low_complexity Low_complexity 1 24 0 226 287 138 11 chr9 83719756 83719843 -34142784 - MIR SINE MIR -112 150 53 2251 233 104 24 chr9 83720228 83720898 -34141729 - L1ME1 LINE L1 -49 6117 5394 551 143 19 9 chr9 83720931 83721036 -34141591 - FLAM_A SINE Alu -15 127 22 432 191 119 0 chr9 83721101 83721227 -34141400 - L1ME1 LINE L1 -817 5329 5189 516 256 122 0 chr9 83721983 83722155 -34140472 + MIR SINE MIR 49 241 -21 6899 45 0 1 chr9 83724128 83724976 -34137651 + L1PA5 LINE L1 5308 6154 0 2698 68 11 0 chr9 83725357 83725708 -34136919 + THE1A LTR MaLR 1 355 0 11663 94 7 0 chr9 83725708 83727275 -34135352 + THE1A-int LTR MaLR 1 1578 -2 2471 93 26 0 chr9 83727279 83727623 -34135004 + THE1A LTR MaLR 3 355 0 2482 78 7 0 chr9 83728263 83728572 -34134055 - AluSq SINE Alu -2 311 1 380 284 142 14 chr9 83728572 83728783 -34133844 - L1ME4a LINE L1 -127 5994 5757 483 252 191 14 chr9 83730163 83730310 -34132317 + MER5A DNA MER1_type 15 187 -2 298 179 90 30 chr9 83730328 83730395 -34132232 - MER5B DNA MER1_type -5 173 103 223 286 75 60 chr9 83730674 83730807 -34131820 + MER5A DNA MER1_type 7 141 -48 2068 119 0 3 chr9 83731428 83731742 -34130885 + AluSq SINE Alu 1 313 0 184 350 131 6 chr9 83732723 83732906 -34129721 + L2 LINE L2 2844 3049 -223 2321 102 0 0 chr9 83732933 83733236 -34129391 + AluSc SINE Alu 1 303 -6 21 0 0 0 chr9 83733448 83733469 -34129158 + AT_rich Low_complexity Low_complexity 1 21 0 1756 175 7 0 chr9 83733581 83733878 -34128749 - AluJb SINE Alu -13 299 1 2579 49 0 0 chr9 83734432 83734740 -34127887 - AluY SINE Alu -3 308 1 2384 80 0 6 chr9 83734833 83735146 -34127481 - AluSx SINE Alu -1 311 1 422 300 0 6 chr9 83735322 83735482 -34127145 - MER52A LTR ERV1 0 1755 1597 1173 234 55 33 chr9 83735484 83735851 -34126776 - MER52A LTR ERV1 -285 1470 1096 2476 66 3 0 chr9 83735851 83736153 -34126474 + AluSq SINE Alu 1 303 -10 774 197 146 82 chr9 83736153 83736447 -34126180 - MER52A LTR ERV1 -542 94 2 228 321 62 0 chr9 83736518 83736599 -34126028 + L2 LINE L2 3168 3253 -19 28 0 0 0 chr9 83736657 83736685 -34125942 + AT_rich Low_complexity Low_complexity 1 28 0 205 346 68 49 chr9 83736698 83736860 -34125767 - MER5B DNA MER1_type -12 166 2 5529 215 30 125 chr9 83737266 83739974 -34122653 + L1MA4 LINE L1 399 2803 -4763 2867 0 0 0 chr9 83739974 83740280 -34122347 + AluYa5 SINE Alu 1 306 -5 5529 215 30 125 chr9 83740280 83740419 -34122208 + L1MA4 LINE L1 2803 2954 -4612 4653 185 56 1 chr9 83740430 83741401 -34121226 + L1MA4 LINE L1 5255 6278 -1287 3733 167 105 46 chr9 83741401 83741854 -34120773 + L1MA4 LINE L1 6752 7177 -542 10260 154 13 3 chr9 83741854 83742683 -34119944 + L1PA13 LINE L1 3312 4131 -2032 4426 74 60 80 chr9 83742683 83743385 -34119242 + LTR12 LTR ERV1 1 688 0 10260 154 13 3 chr9 83743385 83745421 -34117206 + L1PA13 LINE L1 4131 6161 -2 3733 167 105 46 chr9 83745421 83745630 -34116997 + L1MA4 LINE L1 7177 7372 -347 2069 121 28 0 chr9 83745630 83745919 -34116708 + AluSc SINE Alu 1 297 -12 3733 167 105 46 chr9 83745919 83746169 -34116458 + L1MA4 LINE L1 7372 7719 0 787 217 51 15 chr9 83746179 83746460 -34116167 + L1MA9 LINE L1 2913 3395 -4171 2078 120 0 49 chr9 83746488 83746602 -34116025 + AluSg SINE Alu 1 119 -191 2315 42 14 0 chr9 83746602 83746890 -34115737 - L1PA4 LINE L1 0 6155 5864 2078 120 0 49 chr9 83746890 83747099 -34115528 + AluSg SINE Alu 119 308 -2 2245 222 150 20 chr9 83747163 83748093 -34114534 + L1MA9 LINE L1 3293 4343 -3222 1170 191 5 0 chr9 83748100 83748299 -34114328 + AluJb SINE Alu 86 285 -27 225 164 0 60 chr9 83748302 83748369 -34114258 + L1MC4 LINE L1 6640 6702 -1340 * 266 122 0 0 chr9 83748348 83748397 -34114230 - L1MC4 LINE L1 -1341 6701 6653 453 248 0 0 chr9 83748405 83748534 -34114093 + (TA)n Simple_repeat Simple_repeat 1 129 0 195 69 0 0 chr9 83748567 83748596 -34114031 + (TAGA)n Simple_repeat Simple_repeat 2 30 0 9137 198 41 36 chr9 83748610 83751949 -34110678 + L1MA9 LINE L1 4338 7683 -48 22 0 0 0 chr9 83751953 83751975 -34110652 + AT_rich Low_complexity Low_complexity 1 22 0 551 165 9 26 chr9 83752560 83752675 -34109952 + FLAM_C SINE Alu 30 142 -1 781 177 0 72 chr9 83752679 83752860 -34109767 + AluJo SINE Alu 120 287 -25 21 0 0 0 chr9 83752924 83752945 -34109682 + AT_rich Low_complexity Low_complexity 1 21 0 237 258 0 15 chr9 83754173 83754239 -34108388 + L1ME LINE L1 21 85 -5985 437 262 88 10 chr9 83754252 83754493 -34108134 + L1ME LINE L1 153 421 -5649 1283 205 114 10 chr9 83754538 83754845 -34107782 + MER2 DNA MER2_type 7 345 0 394 290 40 1 chr9 83754868 83755011 -34107616 + L1ME LINE L1 452 599 -5471 1300 270 88 38 chr9 83755013 83755510 -34107117 - LTR26 LTR ERV1 0 603 41 287 301 0 14 chr9 83757077 83757150 -34105477 + L2 LINE L2 3201 3272 0 25 0 0 0 chr9 83759274 83759299 -34103328 + AT_rich Low_complexity Low_complexity 1 25 0 2398 75 0 7 chr9 83760954 83761260 -34101367 - AluY SINE Alu -7 304 1 1764 177 7 3 chr9 83761888 83762176 -34100451 - AluJb SINE Alu -20 292 4 353 147 125 96 chr9 83762199 83762335 -34100292 - MER53 DNA DNA -49 140 1 1800 178 22 25 chr9 83762529 83762884 -34099743 - MLT1A1 LTR MaLR -1 364 11 206 208 19 19 chr9 83763121 83763174 -34099453 - L2 LINE L2 -1 3271 3219 1159 191 12 8 chr9 83763702 83763943 -34098684 - AluJb SINE Alu -1 311 70 26 0 0 0 chr9 83764537 83764563 -34098064 + AT_rich Low_complexity Low_complexity 1 26 0 10878 218 35 22 chr9 83764583 83764677 -34097950 + L1PA8 LINE L1 2769 2860 -3312 1905 129 24 11 chr9 83764677 83764964 -34097663 + AluSq SINE Alu 8 298 -15 10878 218 35 22 chr9 83764964 83768228 -34094399 + L1PA8 LINE L1 2860 6171 -1 279 45 0 0 chr9 83768295 83768339 -34094288 - AluY SINE Alu 0 300 257 2486 55 0 10 chr9 83768795 83769103 -34093524 - AluY SINE Alu -5 306 2 2218 76 3 7 chr9 83769454 83769745 -34092882 + AluSq SINE Alu 1 290 -23 352 362 129 33 chr9 83770499 83770709 -34091918 - L3 LINE CR1 -43 1534 1305 191 185 261 0 chr9 83770791 83770856 -34091771 - L2 LINE L2 0 3313 3232 278 274 21 21 chr9 83771167 83771262 -34091365 + L2 LINE L2 2174 2268 -1046 205 331 68 83 chr9 83771657 83771923 -34090704 + L2 LINE L2 2974 3235 -37 268 280 19 70 chr9 83772084 83772241 -34090386 + L2 LINE L2 2590 2738 -576 232 224 134 15 chr9 83772231 83772298 -34090329 + MIR SINE MIR 65 139 -123 * 940 272 92 26 chr9 83772341 83773122 -34089505 + L1ME LINE L1 4919 5764 -406 211 240 0 20 chr9 83774015 83774065 -34088562 + L2 LINE L2 3014 3062 -210 225 348 0 33 chr9 83774332 83774424 -34088203 + L2 LINE L2 2875 2963 -309 1545 146 3 108 chr9 83774799 83774933 -34087694 + AluJb SINE Alu 1 83 -229 2124 117 0 0 chr9 83774933 83775215 -34087412 + AluSc SINE Alu 1 282 -27 1545 146 3 108 chr9 83775215 83775403 -34087224 + AluJb SINE Alu 83 289 -23 1346 274 247 37 chr9 83775552 83775956 -34086671 + L2 LINE L2 2208 2526 -787 1971 109 0 14 chr9 83775956 83776272 -34086355 - AluSg SINE Alu 0 312 1 1346 274 247 37 chr9 83776272 83776698 -34085929 + L2 LINE L2 2526 2861 -452 2460 91 0 3 chr9 83776698 83777007 -34085620 - AluSc SINE Alu -1 308 1 1346 274 247 37 chr9 83777007 83777083 -34085544 + L2 LINE L2 2861 3311 -2 196 241 35 17 chr9 83777579 83777637 -34084990 + MIR SINE MIR 94 152 -110 2076 117 0 3 chr9 83778018 83778333 -34084294 + AluSx SINE Alu 1 314 0 213 39 0 0 chr9 83778356 83778382 -34084245 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 596 141 0 0 chr9 83780018 83780110 -34082517 + AluJb SINE Alu 212 303 -9 1194 162 28 9 chr9 83780116 83780332 -34082295 + L1MA3 LINE L1 16 235 -7330 10705 143 17 10 chr9 83780351 83783296 -34079331 + L1MA3 LINE L1 4755 7721 -3 23 68 0 0 chr9 83783296 83783340 -34079287 + AT_rich Low_complexity Low_complexity 1 44 0 306 287 88 14 chr9 83783512 83783864 -34078763 + L1MB1 LINE L1 2732 3109 -3037 525 305 86 12 chr9 83783898 83784304 -34078323 + L1MB1 LINE L1 3520 3955 -2191 270 273 8 50 chr9 83784831 83784952 -34077675 + L1MB1 LINE L1 5440 5555 -615 416 237 17 42 chr9 83785102 83785220 -34077407 + Charlie4 DNA MER1_type 1 115 -1846 225 0 0 0 chr9 83785295 83785320 -34077307 + (A)n Simple_repeat Simple_repeat 1 25 0 23 0 0 0 chr9 83785423 83785446 -34077181 + AT_rich Low_complexity Low_complexity 1 23 0 702 182 13 19 chr9 83785606 83785765 -34076862 + L1MA10 LINE L1 6170 6327 -7 2349 85 0 3 chr9 83785817 83786112 -34076515 - AluSg SINE Alu -16 294 1 2352 172 9 51 chr9 83786293 83786457 -34076170 + L1MB1 LINE L1 5660 5829 -339 1580 124 0 0 chr9 83786457 83786682 -34075945 + AluSq SINE Alu 81 305 -8 2352 172 9 51 chr9 83786682 83787046 -34075581 + L1MB1 LINE L1 5829 6166 -2 554 302 53 41 chr9 83787087 83787505 -34075122 + L1ME LINE L1 116 548 -5522 273 202 56 11 chr9 83788369 83788458 -34074169 + L1ME4a LINE L1 6021 6113 -8 2211 98 0 3 chr9 83788510 83788796 -34073831 + AluSg SINE Alu 1 285 -25 21 36 0 0 chr9 83790527 83790555 -34072072 + AT_rich Low_complexity Low_complexity 1 28 0 2403 87 0 0 chr9 83790731 83791030 -34071597 - AluSg SINE Alu -11 299 1 189 0 0 0 chr9 83791195 83791216 -34071411 + (A)n Simple_repeat Simple_repeat 1 21 0 348 296 66 77 chr9 83791345 83791632 -34070995 - L1M4 LINE L1 -2066 4080 3797 2375 96 0 3 chr9 83792124 83792437 -34070190 + AluSx SINE Alu 1 312 0 25 0 0 0 chr9 83792866 83792891 -34069736 + AT_rich Low_complexity Low_complexity 1 25 0 2207 159 76 5 chr9 83793003 83793400 -34069227 + LTR32 LTR ERVL 47 471 0 2333 119 0 0 chr9 83794283 83794594 -34068033 + AluSx SINE Alu 1 311 -1 2205 121 0 3 chr9 83794691 83794996 -34067631 + AluSx SINE Alu 3 306 -6 612 255 7 13 chr9 83795206 83795359 -34067268 + MIR SINE MIR 3 154 -108 212 176 0 0 chr9 83795696 83795730 -34066897 + (CATA)n Simple_repeat Simple_repeat 3 36 0 251 113 19 0 chr9 83797488 83797541 -34065086 + CT-rich Low_complexity Low_complexity 1 54 0 267 245 38 9 chr9 83797557 83797663 -34064964 + CT-rich Low_complexity Low_complexity 1 109 0 684 323 113 23 chr9 83797769 83797870 -34064757 + MLT1K LTR MaLR 69 160 -428 591 53 0 0 chr9 83797870 83797945 -34064682 + (GAAA)n Simple_repeat Simple_repeat 3 77 0 684 323 113 23 chr9 83797945 83798313 -34064314 + MLT1K LTR MaLR 160 580 -8 754 190 0 0 chr9 83798932 83799053 -34063574 + FLAM_A SINE Alu 1 121 -12 371 310 204 42 chr9 83799079 83799541 -34063086 + L2 LINE L2 2778 3312 -1 2051 97 0 0 chr9 83800384 83800652 -34061975 + AluY SINE Alu 1 268 -43 511 239 19 19 chr9 83800673 83800828 -34061799 + GA-rich Low_complexity Low_complexity 2 156 0 525 367 0 0 chr9 83800828 83800967 -34061660 + A-rich Low_complexity Low_complexity 1 139 0 33 66 0 0 chr9 83801043 83801104 -34061523 + AT_rich Low_complexity Low_complexity 1 61 0 26 0 0 0 chr9 83801223 83801249 -34061378 + AT_rich Low_complexity Low_complexity 1 26 0 294 165 24 35 chr9 83801503 83801588 -34061039 + GA-rich Low_complexity Low_complexity 3 86 0 2399 81 0 0 chr9 83801835 83802130 -34060497 + AluSg SINE Alu 1 295 -15 232 231 150 54 chr9 83802688 83802835 -34059792 + L1ME LINE L1 9 169 -5901 3360 110 6 33 chr9 83802885 83803405 -34059222 + MER84 LTR ERV1 2 507 0 640 259 120 36 chr9 83803410 83803876 -34058751 + L1ME LINE L1 183 719 -5351 2353 218 63 20 chr9 83803878 83804511 -34058116 + L1ME4a LINE L1 5326 5985 -179 413 271 98 56 chr9 83804529 83804938 -34057689 - L1MEc LINE L1 -4096 2625 2200 258 286 11 11 chr9 83805071 83805203 -34057424 - L1MEc LINE L1 -4592 1987 1846 2159 119 0 0 chr9 83805415 83805701 -34056926 + AluSq SINE Alu 1 286 -27 190 0 0 0 chr9 83805701 83805722 -34056905 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 27938 134 20 63 chr9 83805725 83811398 -34051229 + L1P3 LINE L1 1 5735 -743 434 239 77 40 chr9 83811440 83811737 -34050890 + L1ME LINE L1 700 1007 -5063 403 269 162 29 chr9 83811744 83812052 -34050575 + MLT1L LTR MaLR 19 367 -248 247 180 20 0 chr9 83812128 83812178 -34050449 + MLT1L LTR MaLR 493 543 -72 285 0 43 22 chr9 83812575 83812621 -34050006 + (TTTTTA)n Simple_repeat Simple_repeat 2 48 0 2099 93 14 4 chr9 83813460 83813762 -34048865 - AluSc SINE Alu 0 305 1 459 169 119 8 chr9 83813800 83813918 -34048709 + L1ME4a LINE L1 5990 6120 -1 220 180 80 0 chr9 83814825 83814875 -34047752 - MIR SINE MIR -75 187 134 236 184 0 0 chr9 83816148 83816197 -34046430 - L1ME4a LINE L1 -96 6025 5977 349 286 42 32 chr9 83816509 83816698 -34045929 - L1M4 LINE L1 -2073 4073 3883 182 61 0 61 chr9 83817781 83817814 -34044813 + (TTCTCC)n Simple_repeat Simple_repeat 2 32 0 25136 34 1 2 chr9 83818605 83822577 -34040050 + L1PA4 LINE L1 2183 6154 -1 2359 63 0 7 chr9 83822666 83822953 -34039674 + AluY SINE Alu 1 285 -26 351 0 0 0 chr9 83822953 83822992 -34039635 + (CA)n Simple_repeat Simple_repeat 2 40 0 677 287 38 42 chr9 83823166 83823427 -34039200 + MIR SINE MIR 2 261 -1 2077 122 3 13 chr9 83824364 83824667 -34037960 + AluSc SINE Alu 1 300 -9 366 281 14 14 chr9 83826045 83826184 -34036443 + CT-rich Low_complexity Low_complexity 2 140 0 27 29 0 0 chr9 83826242 83826276 -34036351 + AT_rich Low_complexity Low_complexity 1 34 0 629 307 114 23 chr9 83826289 83826683 -34035944 + MLT1K LTR MaLR 95 524 -64 10820 185 72 22 chr9 83826716 83829183 -34033444 + L1PBa LINE L1 6 2349 -4513 2464 81 0 0 chr9 83829183 83829493 -34033134 + AluY SINE Alu 1 310 -1 10820 185 72 22 chr9 83829493 83832188 -34030439 + L1PBa LINE L1 2349 5421 -1441 244 349 96 12 chr9 83832265 83832431 -34030196 + MIR SINE MIR 49 228 -34 193 250 0 39 chr9 83832556 83832608 -34030019 + L2 LINE L2 3264 3313 0 2383 66 3 0 chr9 83833385 83833688 -34028939 + AluY SINE Alu 3 306 -5 768 268 251 7 chr9 83833693 83833992 -34028635 + L2 LINE L2 2334 2705 -609 381 218 61 83 chr9 83833997 83834226 -34028401 + L1ME2 LINE L1 5922 6145 -19 2062 94 4 14 chr9 83834393 83834670 -34027957 + AluSq SINE Alu 1 274 -39 330 274 37 30 chr9 83834689 83834824 -34027803 + L1MC5 LINE L1 7782 7917 -44 818 101 39 0 chr9 83835452 83835581 -34027046 + L1MA2 LINE L1 6171 6304 0 2069 112 13 3 chr9 83836496 83836799 -34025828 - AluSp SINE Alu -7 306 1 23 33 0 0 chr9 83836802 83836832 -34025795 + AT_rich Low_complexity Low_complexity 1 30 0 29 98 0 0 chr9 83836984 83837076 -34025551 + AT_rich Low_complexity Low_complexity 1 92 0 587 296 89 45 chr9 83837793 83837956 -34024671 + L1MB3 LINE L1 2688 2842 -3304 2366 73 11 0 chr9 83837956 83838243 -34024384 - AluSc SINE Alu -6 303 14 587 296 89 45 chr9 83838243 83838461 -34024166 + L1MB3 LINE L1 2842 3086 -3060 5244 197 9 15 chr9 83838467 83839739 -34022888 + L1MB3 LINE L1 4114 5377 -769 2723 120 17 28 chr9 83839741 83840081 -34022546 + L1MB3 LINE L1 5717 6052 -131 2054 122 48 0 chr9 83840081 83840375 -34022252 + AluSx SINE Alu 1 308 -4 2723 120 17 28 chr9 83840375 83840502 -34022125 + L1MB3 LINE L1 6052 6179 -4 189 0 0 0 chr9 83840509 83840530 -34022097 + (TA)n Simple_repeat Simple_repeat 2 22 0 522 285 51 53 chr9 83840541 83841053 -34021574 + L1M4 LINE L1 3520 4030 -2116 1091 185 126 16 chr9 83841114 83841248 -34021379 - AluJb SINE Alu -30 282 164 207 0 0 0 chr9 83841248 83841271 -34021356 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1091 185 126 16 chr9 83841271 83841390 -34021237 - AluJb SINE Alu -148 164 1 192 284 0 0 chr9 83841477 83841544 -34021083 + GA-rich Low_complexity Low_complexity 1 67 0 397 333 47 31 chr9 83841544 83841736 -34020891 + L1M4 LINE L1 4138 4332 -1814 2160 132 0 3 chr9 83842102 83842413 -34020214 - AluSg SINE Alu 0 310 1 614 277 94 21 chr9 83842525 83842864 -34019763 - L1ME4a LINE L1 -218 5903 5540 450 81 81 0 chr9 83843136 83843210 -34019417 - L1MA9 LINE L1 -5 6307 6228 2225 88 3 10 chr9 83843570 83843865 -34018762 - AluSx SINE Alu -14 298 6 770 125 14 168 chr9 83843933 83844141 -34018486 - AluSg/x SINE Alu -37 275 100 979 73 41 0 chr9 83844144 83844267 -34018360 - AluSq/x SINE Alu -181 132 5 192 97 0 0 chr9 83844354 83844385 -34018242 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 589 234 31 50 chr9 83844430 83844750 -34017877 + L1ME4a LINE L1 5774 6087 -34 726 228 20 0 chr9 83844796 83844945 -34017682 + FRAM SINE Alu 6 157 -19 2168 118 0 3 chr9 83844952 83845256 -34017371 - AluSx SINE Alu -9 303 1 271 313 67 8 chr9 83845264 83845398 -34017229 - L1ME LINE L1 -463 5658 5517 1741 196 20 46 chr9 83845450 83845908 -34016719 - L1ME1 LINE L1 -50 6116 5671 2143 113 0 0 chr9 83846794 83847100 -34015527 + AluSg SINE Alu 1 306 0 1096 263 71 23 chr9 83847130 83847564 -34015063 - LTR16A1 LTR ERVL -2 455 1 1768 144 55 20 chr9 83847831 83848123 -34014504 + AluJb SINE Alu 1 302 -10 181 380 22 0 chr9 83848376 83848468 -34014159 - MIR3 SINE MIR -25 183 90 2449 61 0 0 chr9 83848481 83848776 -34013851 - AluY SINE Alu -16 295 1 778 135 0 0 chr9 83848777 83848925 -34013702 - L1PBa LINE L1 -4112 2751 2604 207 0 0 0 chr9 83849025 83849048 -34013579 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 363 282 94 8 chr9 83849398 83849515 -34013112 + MIR3 SINE MIR 71 197 -11 2167 124 0 7 chr9 83849937 83850235 -34012392 - AluSg SINE Alu -14 296 1 236 286 117 0 chr9 83851005 83851082 -34011545 - L2 LINE L2 0 3272 3187 187 288 34 0 chr9 83851457 83851516 -34011111 - MIR SINE MIR -51 211 151 570 223 51 51 chr9 83851527 83851801 -34010826 + MER113 DNA MER1_type? 98 371 -150 2246 73 10 0 chr9 83851801 83852090 -34010537 - AluSx SINE Alu -20 292 1 219 103 0 0 chr9 83852531 83852570 -34010057 + (T)n Simple_repeat Simple_repeat 1 39 0 2258 85 3 3 chr9 83853630 83853923 -34008704 - AluSc SINE Alu -16 293 1 2284 122 0 0 chr9 83854388 83854692 -34007935 - AluSx SINE Alu -8 304 1 352 256 101 101 chr9 83854906 83854970 -34007657 - MIR SINE MIR -11 251 188 1677 185 0 7 chr9 83854970 83855256 -34007371 - AluJb SINE Alu -22 290 7 352 256 101 101 chr9 83855256 83855410 -34007217 - MIR SINE MIR -73 189 33 828 273 140 33 chr9 83856208 83856554 -34006073 - MER115 DNA AcHobo -209 484 82 2182 106 27 0 chr9 83856554 83856846 -34005781 + AluSx SINE Alu 1 300 -12 828 273 140 33 chr9 83856846 83856927 -34005700 - MER115 DNA AcHobo -611 82 11 249 108 0 0 chr9 83857044 83857081 -34005546 + (TTCC)n Simple_repeat Simple_repeat 4 40 0 205 152 0 0 chr9 83857082 83857115 -34005512 + C-rich Low_complexity Low_complexity 4 36 0 1989 162 0 9 chr9 83857120 83857435 -34005192 - AluJb SINE Alu 0 312 1 1549 107 144 23 chr9 83857679 83857942 -34004685 - AluSq SINE Alu -18 295 1 2187 68 34 0 chr9 83858403 83858669 -34003958 + AluY SINE Alu 1 275 -36 25 0 0 0 chr9 83859238 83859263 -34003364 + AT_rich Low_complexity Low_complexity 1 25 0 2269 121 0 0 chr9 83859305 83859610 -34003017 + AluSx SINE Alu 5 309 -3 185 0 40 0 chr9 83859672 83859697 -34002930 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 2163 112 10 13 chr9 83859997 83860300 -34002327 + AluSx SINE Alu 1 302 -10 366 209 194 23 chr9 83861010 83861064 -34001563 - MER63A DNA MER1_type -1481 207 164 180 0 0 0 chr9 83861064 83861084 -34001543 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 366 209 194 23 chr9 83861084 83861158 -34001469 - MER63A DNA MER1_type -1524 164 57 2801 128 40 17 chr9 83861158 83861749 -34000878 - MER4B LTR ERV1 0 766 1 21 0 0 0 chr9 83862036 83862057 -34000570 + AT_rich Low_complexity Low_complexity 1 21 0 2058 135 0 3 chr9 83862276 83862572 -34000055 - AluSx SINE Alu -17 295 1 511 238 85 118 chr9 83863648 83863682 -33998945 + L1ME4a LINE L1 5571 5605 -516 2250 103 3 0 chr9 83863682 83863973 -33998654 + AluSp SINE Alu 3 294 -19 511 238 85 118 chr9 83863973 83864479 -33998148 + L1ME4a LINE L1 5605 6093 -28 288 0 0 0 chr9 83864484 83864497 -33998130 + (CA)n Simple_repeat Simple_repeat 1 45 0 288 0 0 0 chr9 83864497 83864529 -33998098 + (CA)n Simple_repeat Simple_repeat 2 33 0 2193 104 0 23 chr9 83864561 83864860 -33997767 - AluSx SINE Alu -20 292 1 632 234 11 27 chr9 83865229 83865417 -33997210 + MIR SINE MIR 78 262 0 207 0 0 0 chr9 83865424 83865447 -33997180 + (CAT)n Simple_repeat Simple_repeat 2 24 0 26 30 0 0 chr9 83865533 83865566 -33997061 + AT_rich Low_complexity Low_complexity 1 33 0 1689 167 0 14 chr9 83865639 83865915 -33996712 - AluJo SINE Alu -36 276 5 1700 147 62 7 chr9 83866104 83866377 -33996250 + AluSx SINE Alu 16 303 -9 1931 121 39 4 chr9 83866387 83866667 -33995960 + AluSg SINE Alu 17 306 -4 2416 93 0 3 chr9 83867594 83867907 -33994720 + AluSx SINE Alu 1 312 0 1707 162 41 48 chr9 83869483 83869797 -33992830 - AluJo SINE Alu 0 312 1 2228 90 19 29 chr9 83869981 83870291 -33992336 + AluSc SINE Alu 1 307 -2 571 314 61 7 chr9 83870485 83870765 -33991862 - MARNA DNA Mariner -31 555 261 1944 141 3 16 chr9 83870859 83871164 -33991463 - AluJb SINE Alu -11 301 1 207 0 0 0 chr9 83871804 83871827 -33990800 + (T)n Simple_repeat Simple_repeat 1 23 0 2122 130 0 0 chr9 83871886 83872185 -33990442 + AluSx SINE Alu 1 299 -13 201 317 233 0 chr9 83872928 83873048 -33989579 + L2 LINE L2 3125 3272 0 333 375 37 0 chr9 83873055 83873191 -33989436 + L2 LINE L2 3117 3257 -15 1970 141 14 3 chr9 83873630 83873913 -33988714 - AluSq SINE Alu -27 286 1 202 300 0 0 chr9 83874334 83874384 -33988243 + CT-rich Low_complexity Low_complexity 4 53 0 577 274 45 49 chr9 83874391 83874636 -33987991 - MIR SINE MIR -14 248 5 209 329 90 76 chr9 83874648 83874937 -33987690 - L2 LINE L2 -84 3188 2896 463 139 0 0 chr9 83875423 83875502 -33987125 - Alu SINE Alu -12 299 221 2065 137 0 0 chr9 83876171 83876464 -33986163 + AluSx SINE Alu 1 293 -19 1661 61 0 38 chr9 83876855 83877067 -33985560 - AluY SINE Alu -107 204 1 34 55 0 0 chr9 83877100 83877155 -33985472 + AT_rich Low_complexity Low_complexity 1 55 0 21 0 0 0 chr9 83877186 83877207 -33985420 + AT_rich Low_complexity Low_complexity 1 21 0 2417 87 0 10 chr9 83877221 83877530 -33985097 - AluSq SINE Alu -7 306 1 206 278 0 0 chr9 83877980 83878034 -33984593 - L2 LINE L2 -9 3263 3210 235 293 37 0 chr9 83878129 83878211 -33984416 - L2 LINE L2 -174 3098 3014 2420 80 3 10 chr9 83878226 83878540 -33984087 - AluSx SINE Alu 0 312 1 860 273 11 23 chr9 83878934 83879127 -33983500 + MIR SINE MIR 6 200 -62 5790 116 77 69 chr9 83879127 83879394 -33983233 - Tigger3b DNA MER2_type -1798 1230 967 2333 98 0 0 chr9 83879394 83879689 -33982938 - AluY SINE Alu -16 295 1 5790 116 77 69 chr9 83879689 83879957 -33982670 - Tigger3b DNA MER2_type -2061 967 703 2049 84 8 4 chr9 83879957 83880219 -33982408 - AluSq SINE Alu -50 263 1 1580 196 39 3 chr9 83880219 83880503 -33982124 - AluJo SINE Alu -13 299 5 5790 116 77 69 chr9 83880503 83880576 -33982051 - Tigger3b DNA MER2_type -2325 703 632 2049 140 0 0 chr9 83880576 83880884 -33981743 + AluSx SINE Alu 1 308 0 5790 116 77 69 chr9 83880884 83881302 -33981325 - Tigger3b DNA MER2_type -2396 632 186 1990 134 3 13 chr9 83881302 83881601 -33981026 - AluJo SINE Alu -16 296 1 5790 116 77 69 chr9 83881601 83881789 -33980838 - Tigger3b DNA MER2_type -2842 186 1 860 273 11 23 chr9 83881789 83881855 -33980772 + MIR SINE MIR 200 262 0 333 71 0 18 chr9 83882055 83882111 -33980516 + AluSc SINE Alu 245 299 0 1232 113 6 6 chr9 83882116 83882284 -33980343 + AluSg/x SINE Alu 129 296 -16 1241 110 91 135 chr9 83882792 83883111 -33979516 - AluSx SINE Alu -7 305 1 360 0 0 0 chr9 83883554 83883594 -33979033 + (TG)n Simple_repeat Simple_repeat 1 40 0 240 288 0 0 chr9 83884194 83884267 -33978360 + (TA)n Simple_repeat Simple_repeat 2 74 0 2102 139 0 0 chr9 83884346 83884649 -33977978 - AluSx SINE Alu -8 304 2 311 295 67 0 chr9 83884672 83884777 -33977850 - L2 LINE L2 -2 3311 3200 2366 73 0 7 chr9 83885076 83885385 -33977242 + AluSg SINE Alu 1 310 0 206 340 53 0 chr9 83885669 83885763 -33976864 + L2 LINE L2 3134 3232 -40 308 354 140 23 chr9 83886132 83886474 -33976153 - L3 LINE CR1 -380 1197 816 2251 98 0 0 chr9 83886479 83886765 -33975862 + AluSx SINE Alu 11 296 -16 1882 138 25 11 chr9 83886858 83887140 -33975487 + AluSx SINE Alu 2 287 -25 185 88 29 0 chr9 83887140 83887151 -33975476 + (TA)n Simple_repeat Simple_repeat 2 11 -25 2209 109 3 7 chr9 83887151 83887444 -33975183 + AluSq SINE Alu 1 292 -21 185 88 29 0 chr9 83887444 83887466 -33975161 + (TA)n Simple_repeat Simple_repeat 11 36 0 190 70 0 70 chr9 83887837 83887880 -33974747 + (TTTTTG)n Simple_repeat Simple_repeat 6 45 0 22 0 0 0 chr9 83888312 83888334 -33974293 + GC_rich Low_complexity Low_complexity 1 22 0 2266 118 0 0 chr9 83890192 83890498 -33972129 + AluSx SINE Alu 3 308 -4 480 217 72 72 chr9 83890501 83890708 -33971919 + L1MEc LINE L1 1759 1965 -4431 391 281 101 25 chr9 83890846 83891116 -33971511 + L1ME LINE L1 5502 5812 -350 2381 87 0 3 chr9 83891129 83891428 -33971199 - AluSx SINE Alu -14 298 1 2264 103 3 19 chr9 83891814 83892125 -33970502 - AluSp SINE Alu -7 306 1 2070 128 0 17 chr9 83893119 83893415 -33969212 + AluSx SINE Alu 1 291 -21 417 308 118 5 chr9 83893521 83893716 -33968911 - MIR SINE MIR -11 251 35 383 296 32 8 chr9 83895105 83895230 -33967397 + MIR SINE MIR 20 147 -115 2083 90 56 0 chr9 83895328 83895620 -33967007 + AluSg SINE Alu 1 307 0 424 289 65 90 chr9 83896043 83896136 -33966491 + Charlie8 DNA MER1_type 6 100 -241 2180 118 26 0 chr9 83896136 83896441 -33966186 + AluSp SINE Alu 1 313 0 424 289 65 90 chr9 83896441 83896624 -33966003 + Charlie8 DNA MER1_type 100 275 -66 2304 113 0 0 chr9 83896656 83896965 -33965662 - AluSg SINE Alu -1 309 1 2459 92 0 0 chr9 83897247 83897551 -33965076 - AluSq SINE Alu -9 304 1 2330 81 9 31 chr9 83898400 83898720 -33963907 - AluSp SINE Alu 0 313 1 2200 118 10 0 chr9 83898720 83899026 -33963601 - AluSx SINE Alu -3 309 1 586 236 138 89 chr9 83899332 83899655 -33962972 - L1ME4a LINE L1 -19 6102 5796 761 168 0 8 chr9 83899655 83899786 -33962841 - FLAM_A SINE Alu -3 130 1 586 236 138 89 chr9 83899786 83899878 -33962749 - L1ME4a LINE L1 -325 5796 5710 2438 91 3 0 chr9 83899878 83900187 -33962440 - AluSx SINE Alu -2 310 1 586 236 138 89 chr9 83900187 83900329 -33962298 - L1ME4a LINE L1 -411 5710 5517 2993 212 12 39 chr9 83900356 83901074 -33961553 - L1ME1 LINE L1 -29 6137 5439 1214 91 0 24 chr9 83901198 83901363 -33961264 - AluSq SINE Alu -152 161 1 2181 109 3 0 chr9 83901468 83901752 -33960875 - AluSg SINE Alu -25 285 1 325 269 44 28 chr9 83901937 83902119 -33960508 - L1MC4a LINE L1 -1802 6006 5822 642 237 74 0 chr9 83902119 83902285 -33960342 - AluJb SINE Alu 0 315 140 709 242 17 69 chr9 83902286 83902427 -33960200 - L1MC4a LINE L1 -1978 5830 5703 2192 109 0 3 chr9 83902427 83902740 -33959887 + AluSx SINE Alu 2 313 0 709 242 17 69 chr9 83902740 83902828 -33959799 - L1MC4a LINE L1 -2105 5703 5612 2143 94 0 4 chr9 83902920 83903196 -33959431 + AluSg SINE Alu 1 275 -35 24 0 0 0 chr9 83903243 83903267 -33959360 + AT_rich Low_complexity Low_complexity 1 24 0 2144 119 0 0 chr9 83903499 83903807 -33958820 + AluSx SINE Alu 1 308 0 1126 267 71 23 chr9 83903837 83904271 -33958356 - LTR16A1 LTR ERVL -2 455 1 1768 144 55 20 chr9 83904538 83904830 -33957797 + AluJb SINE Alu 1 302 -10 2211 114 0 10 chr9 83905188 83905487 -33957140 - AluSx SINE Alu -16 296 1 305 277 170 7 chr9 83906368 83906509 -33956118 - MIR SINE MIR -55 207 44 252 0 0 0 chr9 83906646 83906674 -33955953 + (T)n Simple_repeat Simple_repeat 1 28 0 1341 117 25 106 chr9 83906822 83907005 -33955622 - L1MA2 LINE L1 -4 6300 6104 2305 105 3 3 chr9 83907005 83907310 -33955317 + AluSx SINE Alu 1 305 -7 1878 116 9 88 chr9 83907310 83907628 -33954999 + AluSg SINE Alu 1 293 -17 1341 117 25 106 chr9 83907628 83907726 -33954901 - L1MA2 LINE L1 -198 6106 6041 1036 124 0 0 chr9 83908368 83908513 -33954114 - AluSq SINE Alu -33 280 136 459 202 0 0 chr9 83908513 83908612 -33954015 + (TA)n Simple_repeat Simple_repeat 1 99 0 240 159 4 0 chr9 83908612 83908674 -33953953 - L1MC4 LINE L1 -1339 6983 2006 2075 103 35 3 chr9 83908680 83908962 -33953665 - AluSg SINE Alu -19 291 1 1118 74 7 0 chr9 83908962 83909097 -33953530 - AluSq SINE Alu -176 137 2 183 337 81 0 chr9 83909100 83909186 -33953441 - MIR SINE MIR -63 145 53 1237 112 43 32 chr9 83909328 83909358 -33953269 + AluSg/x SINE Alu 106 134 -176 2177 108 10 3 chr9 83909358 83909664 -33952963 + AluSc SINE Alu 1 308 -1 1237 112 43 32 chr9 83909664 83909821 -33952806 + AluSg/x SINE Alu 134 295 -15 2039 116 32 0 chr9 83910252 83910536 -33952091 + AluSx SINE Alu 1 293 -19 228 213 32 138 chr9 83910688 83910782 -33951845 - L2 LINE L2 -3 3269 3186 1721 154 37 0 chr9 83911033 83911341 -33951286 + AluSx SINE Alu 1 318 0 2211 111 0 25 chr9 83911373 83911688 -33950939 + AluSx SINE Alu 1 307 -5 2401 99 0 0 chr9 83911881 83912183 -33950444 + AluSx SINE Alu 1 302 -10 416 284 75 22 chr9 83912388 83912522 -33950105 - MIR3 SINE MIR -34 174 34 1916 129 4 4 chr9 83912645 83913003 -33949624 + AluSx SINE Alu 7 364 0 1174 254 58 14 chr9 83913005 83913352 -33949275 - L1MC/D LINE L1 -2030 5778 5417 262 236 194 61 chr9 83913559 83913724 -33948903 - MIR SINE MIR -11 251 65 1491 133 90 25 chr9 83914134 83914412 -33948215 - L1MB1 LINE L1 -22 6146 5851 4050 111 13 2 chr9 83914600 83915152 -33947475 - L1PA16 LINE L1 -2 6164 5607 2314 92 3 0 chr9 83915153 83915448 -33947179 - AluSg SINE Alu -14 296 1 2137 113 7 3 chr9 83915448 83915741 -33946886 - AluSq SINE Alu -19 294 1 234 217 0 22 chr9 83915963 83916009 -33946618 + MER33 DNA MER1_type 12 56 -268 1145 97 39 0 chr9 83916009 83916164 -33946463 + AluSc SINE Alu 148 308 -1 1047 216 19 19 chr9 83916164 83916428 -33946199 + MER33 DNA MER1_type 56 319 -5 41 36 0 0 chr9 83916630 83916685 -33945942 + AT_rich Low_complexity Low_complexity 1 55 0 2253 121 0 10 chr9 83916726 83917039 -33945588 - AluSx SINE Alu -2 310 1 259 284 27 0 chr9 83917074 83917148 -33945479 + MIR SINE MIR 74 149 -113 228 158 0 0 chr9 83917149 83917187 -33945440 - L1MB1 LINE L1 -141 6027 5990 2577 163 101 19 chr9 83917553 83917956 -33944671 + MLT1D LTR MaLR 1 449 -56 2178 113 13 0 chr9 83917956 83918258 -33944369 - AluSp SINE Alu -7 306 1 2577 163 101 19 chr9 83918258 83918321 -33944306 + MLT1D LTR MaLR 449 505 0 1015 252 52 26 chr9 83918945 83919251 -33943376 + MER46C DNA MER2_type 18 331 -7 21 0 0 0 chr9 83919271 83919292 -33943335 + AT_rich Low_complexity Low_complexity 1 21 0 768 215 68 91 chr9 83919335 83919642 -33942985 + MLT1B LTR MaLR 91 390 0 306 253 147 7 chr9 83919803 83919953 -33942674 + L1ME4a LINE L1 5692 5862 -259 229 250 0 0 chr9 83919984 83920032 -33942595 + L1ME3 LINE L1 6094 6141 -21 4160 214 116 18 chr9 83920055 83921165 -33941462 + L1MC4 LINE L1 6354 7572 -470 5206 218 12 36 chr9 83921166 83921684 -33940943 + L1 LINE L1 2420 2949 -3197 2283 99 3 3 chr9 83921684 83921988 -33940639 + AluSg SINE Alu 1 304 -6 5206 218 12 36 chr9 83921988 83922651 -33939976 + L1 LINE L1 2949 3566 -2580 1954 132 0 13 chr9 83922651 83922955 -33939672 + AluSc SINE Alu 1 300 -9 5206 218 12 36 chr9 83922955 83923167 -33939460 + L1 LINE L1 3566 3781 -2365 352 282 94 8 chr9 83923383 83923500 -33939127 + MIR3 SINE MIR 71 197 -11 2156 124 0 7 chr9 83923922 83924220 -33938407 - AluSg SINE Alu -14 296 1 231 286 117 0 chr9 83924990 83925067 -33937560 - L2 LINE L2 0 3272 3187 180 288 34 0 chr9 83925442 83925501 -33937126 - MIR SINE MIR -51 211 151 916 226 35 93 chr9 83925510 83925786 -33936841 + MER113 DNA MER1_type? 96 337 -184 2242 89 7 0 chr9 83925786 83926077 -33936550 - AluSx SINE Alu -19 293 1 916 226 35 93 chr9 83926077 83926252 -33936375 + MER113 DNA MER1_type? 337 521 0 505 264 7 27 chr9 83926260 83926408 -33936219 - MIR SINE MIR -105 157 13 1005 161 0 0 chr9 83926706 83926867 -33935760 + AluSg/x SINE Alu 137 297 -15 182 37 37 0 chr9 83927330 83927357 -33935270 + (TTTTTA)n Simple_repeat Simple_repeat 3 30 0 1794 124 3 75 chr9 83929026 83929333 -33933294 - AluSq SINE Alu -7 306 22 7731 154 31 27 chr9 83929437 83929686 -33932941 + L1PA16 LINE L1 3631 3878 -2288 281 86 0 0 chr9 83929686 83929721 -33932906 + U2 snRNA snRNA 1 35 -153 7731 154 31 27 chr9 83929721 83930003 -33932624 + L1PA16 LINE L1 3878 4157 -2009 2264 87 7 7 chr9 83930003 83930302 -33932325 - AluSq SINE Alu -14 299 1 7731 154 31 27 chr9 83930302 83931140 -33931487 + L1PA16 LINE L1 4157 4990 -1176 2278 92 0 10 chr9 83931140 83931434 -33931193 + AluSq SINE Alu 1 291 -22 7731 154 31 27 chr9 83931434 83932549 -33930078 + L1PA16 LINE L1 4990 6161 -5 1267 195 109 73 chr9 83932544 83933010 -33929617 + L1MC4 LINE L1 7560 8042 0 * 2231 113 0 0 chr9 83933383 83933684 -33928943 + AluSx SINE Alu 1 301 -11 252 257 7 42 chr9 83933726 83933870 -33928757 + (TA)n Simple_repeat Simple_repeat 1 139 0 501 279 40 55 chr9 83934038 83934239 -33928388 + MIR SINE MIR 47 244 -18 353 345 20 72 chr9 83934268 83934517 -33928110 + L2 LINE L2 3028 3263 -9 282 238 63 0 chr9 83935355 83935418 -33927209 - L2 LINE L2 -1 3271 3205 1828 111 0 4 chr9 83935655 83935899 -33926728 - AluSx SINE Alu -69 243 1 206 264 0 38 chr9 83936097 83936150 -33926477 - MIR3 SINE MIR -8 200 150 41 21 0 0 chr9 83936247 83936295 -33926332 + AT_rich Low_complexity Low_complexity 1 48 0 668 258 26 0 chr9 83936368 83936519 -33926108 + MIR SINE MIR 29 183 -79 337 306 50 8 chr9 83936712 83936833 -33925794 - MIR SINE MIR -57 151 26 796 274 56 14 chr9 83937579 83937867 -33924760 + L1ME LINE L1 5524 5823 -298 1361 179 43 43 chr9 83937889 83938030 -33924597 + AluJb SINE Alu 5 145 -167 2252 110 0 0 chr9 83938030 83938329 -33924298 + AluSx SINE Alu 1 299 -13 1361 179 43 43 chr9 83938329 83938489 -33924138 + AluJb SINE Alu 144 306 -6 867 62 0 35 chr9 83938493 83938606 -33924021 + AluSq/x SINE Alu 6 114 -199 1949 94 0 0 chr9 83938706 83938950 -33923677 - AluSq SINE Alu -69 244 1 1499 180 91 80 chr9 83939374 83939801 -33922826 + MSTB2 LTR MaLR 24 455 -2 776 281 143 36 chr9 83939842 83940284 -33922343 + HAL1 LINE L1 594 1082 -1425 1341 235 80 78 chr9 83940323 83940864 -33921763 - MER68 LTR ERV1 -18 544 3 2511 271 102 41 chr9 83940868 83942175 -33920452 + HAL1 LINE L1 1089 2474 -33 36 0 0 0 chr9 83942175 83942211 -33920416 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr9 83942298 83942321 -33920306 + AT_rich Low_complexity Low_complexity 1 23 0 427 278 107 11 chr9 83942716 83942986 -33919641 - L1MCa LINE L1 -5127 1814 1519 1483 200 19 28 chr9 83942994 83943319 -33919308 - L1MCa LINE L1 -4999 1424 1103 226 290 42 112 chr9 83943403 83943617 -33919010 - HAL1 LINE L1 -2298 209 11 2037 134 0 0 chr9 83943692 83944009 -33918618 - AluSx SINE Alu 0 317 1 21 36 0 0 chr9 83944011 83944039 -33918588 + AT_rich Low_complexity Low_complexity 1 28 0 222 118 0 0 chr9 83944214 83944248 -33918379 + (TTTC)n Simple_repeat Simple_repeat 3 36 0 26 74 0 0 chr9 83944588 83944642 -33917985 + AT_rich Low_complexity Low_complexity 1 54 0 1922 181 7 0 chr9 83944642 83944946 -33917681 + AluSx SINE Alu 1 306 -6 549 266 91 52 chr9 83945161 83945302 -33917325 - L1ME4a LINE L1 -77 6044 5910 222 37 0 0 chr9 83945302 83945329 -33917298 + (TA)n Simple_repeat Simple_repeat 1 27 0 2251 111 3 0 chr9 83945330 83945628 -33916999 - AluSq SINE Alu -14 299 1 549 266 91 52 chr9 83945628 83945848 -33916779 - L1ME4a LINE L1 -210 5911 5667 526 305 87 42 chr9 83945923 83946450 -33916177 - L1ME4a LINE L1 -743 5403 4969 1454 181 16 73 chr9 83946455 83946652 -33915975 - MLT2D LTR ERVL -7 457 250 1769 143 32 4 chr9 83946652 83946931 -33915696 + AluJb SINE Alu 14 300 -12 1454 181 16 73 chr9 83946931 83947244 -33915383 - MLT2D LTR ERVL -214 250 1 2146 108 0 0 chr9 83948530 83948839 -33913788 + AluSx SINE Alu 4 312 0 182 128 170 64 chr9 83949244 83949291 -33913336 - L2 LINE L2 0 3272 3221 1022 193 0 6 chr9 83949538 83949712 -33912915 - AluJb SINE Alu -6 306 132 1676 184 19 13 chr9 83949712 83950021 -33912606 - AluJb SINE Alu -1 311 1 247 289 46 92 chr9 83950027 83950245 -33912382 - L2 LINE L2 -255 3017 2810 848 335 77 29 chr9 83950434 83950852 -33911775 - L3 LINE CR1 -923 654 217 304 330 11 0 chr9 83951573 83951664 -33910963 + MIR3 SINE MIR 92 183 -25 325 346 62 47 chr9 83951699 83951910 -33910717 - MIR SINE MIR 0 262 49 1331 162 29 0 chr9 83951917 83952127 -33910500 + MER20 DNA MER1_type 1 216 -3 2270 102 0 3 chr9 83952369 83952672 -33909955 - AluSc SINE Alu -7 302 1 1211 104 12 0 chr9 83952829 83952993 -33909634 - AluSp SINE Alu -147 166 1 343 212 76 42 chr9 83953031 83953149 -33909478 - L1ME LINE L1 -315 5806 5685 290 316 164 0 chr9 83953323 83953475 -33909152 - MIR SINE MIR -20 242 66 736 339 79 30 chr9 83953479 83954180 -33908447 - L2 LINE L2 0 3313 2577 244 289 181 0 chr9 83954900 83955066 -33907561 - L1ME4a LINE L1 -2 6119 5924 26 0 0 0 chr9 83955120 83955146 -33907481 + AT_rich Low_complexity Low_complexity 1 26 0 284 211 11 111 chr9 83955246 83955336 -33907291 + MIR SINE MIR 115 195 -67 22 88 0 0 chr9 83955397 83955454 -33907173 + AT_rich Low_complexity Low_complexity 1 57 0 307 232 41 54 chr9 83955470 83955601 -33907026 - L1ME LINE L1 -427 5694 5568 2352 90 0 0 chr9 83955649 83955938 -33906689 - AluSq SINE Alu -24 289 1 2222 99 0 62 chr9 83956671 83956995 -33905632 - AluSq SINE Alu -9 304 1 762 192 192 27 chr9 83957074 83957298 -33905329 + MLT1K LTR MaLR 158 418 -170 1896 127 22 4 chr9 83957396 83957703 -33904924 - AluSx SINE Alu 0 312 1 2258 126 3 3 chr9 83957725 83958035 -33904592 - AluSx SINE Alu -2 310 1 2366 103 3 0 chr9 83958222 83958534 -33904093 - AluSp SINE Alu 0 313 1 268 265 24 24 chr9 83958581 83958664 -33903963 + MIR3 SINE MIR 99 181 -27 443 135 0 34 chr9 83958670 83958759 -33903868 - L1MB8 LINE L1 0 6178 6093 724 150 41 14 chr9 83958793 83958940 -33903687 - L1MB4 LINE L1 -17 6163 6013 317 309 32 0 chr9 83959726 83959820 -33902807 + L3 LINE CR1 1395 1491 -86 287 317 167 18 chr9 83959884 83960111 -33902516 + MIR SINE MIR 2 262 0 1868 156 23 7 chr9 83960899 83961206 -33901421 - AluSx SINE Alu 0 312 1 944 118 0 15 chr9 83961283 83961418 -33901209 + AluSq/x SINE Alu 1 133 -179 1620 106 0 0 chr9 83961421 83961628 -33900999 + AluSc SINE Alu 1 207 -102 386 65 0 0 chr9 83961728 83961774 -33900853 - LTR57-int LTR ERVL -4995 348 303 665 241 55 72 chr9 83961852 83962269 -33900358 - LTR26-int LTR ERV1 -5039 1018 552 457 313 28 39 chr9 83962430 83962609 -33900018 - LTR26-int LTR ERV1 -6062 201 25 3627 129 5 64 chr9 83962636 83962799 -33899828 - LTR26 LTR ERV1 -2 601 430 2096 141 0 0 chr9 83962799 83963096 -33899531 - AluSx SINE Alu -15 297 1 3627 129 5 64 chr9 83963096 83963561 -33899066 - LTR26 LTR ERV1 -173 430 10 289 235 34 42 chr9 83963938 83964057 -33898570 + L2 LINE L2 2964 3081 -232 312 250 83 42 chr9 83964178 83964298 -33898329 - L2 LINE L2 0 3313 3189 2342 93 7 3 chr9 83964511 83964812 -33897815 + AluSp SINE Alu 1 302 -11 213 328 52 22 chr9 83965149 83965283 -33897344 - L2 LINE L2 -190 3082 2945 310 354 144 11 chr9 83965491 83965776 -33896851 - L2 LINE L2 -578 2736 2414 611 294 71 62 chr9 83965864 83966232 -33896395 + LTR67 LTR ERVL 34 404 -153 2124 130 0 17 chr9 83966386 83966549 -33896078 - AluSq SINE Alu -17 296 139 2264 108 7 0 chr9 83966549 83966854 -33895773 - AluSg SINE Alu -3 307 1 2124 130 0 17 chr9 83966854 83966991 -33895636 - AluSq SINE Alu -174 139 1 337 295 21 0 chr9 83967046 83967141 -33895486 + MIR3 SINE MIR 82 178 -30 2420 44 0 20 chr9 83967415 83967738 -33894889 + AluY SINE Alu 1 311 0 284 281 130 24 chr9 83968110 83968237 -33894390 - MIR SINE MIR -66 142 16 1066 163 0 0 chr9 83969094 83969260 -33893367 - FRAM SINE Alu -9 167 2 250 131 66 0 chr9 83970401 83970462 -33892165 + L1MA9 LINE L1 6235 6299 -13 2111 142 0 7 chr9 83970507 83970816 -33891811 + AluSx SINE Alu 1 307 -5 423 0 0 0 chr9 83971859 83971906 -33890721 + (TG)n Simple_repeat Simple_repeat 2 48 0 546 290 30 30 chr9 83972108 83972308 -33890319 + L2 LINE L2 3103 3302 -11 2144 184 204 36 chr9 83972511 83972844 -33889783 - L1ME1 LINE L1 -9 6155 5879 2125 112 21 0 chr9 83972844 83973129 -33889498 - AluSx SINE Alu -21 291 1 2144 184 204 36 chr9 83973129 83973461 -33889166 - L1ME1 LINE L1 -285 5879 5369 190 373 20 10 chr9 83974010 83974112 -33888515 - L2 LINE L2 -1 3271 3169 338 249 77 46 chr9 83975427 83975626 -33887001 - MIR SINE MIR -6 256 57 2364 78 7 0 chr9 83976932 83977226 -33885401 - AluSc SINE Alu -13 296 1 25 0 0 0 chr9 83979541 83979566 -33883061 + AT_rich Low_complexity Low_complexity 1 25 0 491 307 7 7 chr9 83979653 83979803 -33882824 - MIR SINE MIR -104 158 9 399 290 31 49 chr9 83980076 83980238 -33882389 - MIR3 SINE MIR -7 201 43 22 0 0 0 chr9 83980298 83980320 -33882307 + AT_rich Low_complexity Low_complexity 1 22 0 270 266 0 0 chr9 83981143 83981207 -33881420 + L2 LINE L2 3206 3269 -3 2089 139 0 0 chr9 83981807 83982101 -33880526 - AluSx SINE Alu -18 294 1 236 321 47 19 chr9 83982289 83982395 -33880232 + MIR3 SINE MIR 52 160 -48 330 333 54 8 chr9 83982408 83982537 -33880090 - L2 LINE L2 -5 3267 3133 441 0 0 0 chr9 83982914 83982963 -33879664 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 1978 109 7 4 chr9 83982967 83983241 -33879386 - AluSg SINE Alu -31 279 5 2123 129 3 3 chr9 83983611 83983905 -33878722 + AluSx SINE Alu 1 294 -18 376 277 127 38 chr9 83983974 83984241 -33878386 - L1ME LINE L1 -351 5813 5523 2027 153 3 0 chr9 83984494 83984795 -33877832 + AluJo SINE Alu 11 312 0 455 346 70 40 chr9 83984929 83985530 -33877097 - L1ME LINE L1 -1429 4717 4099 224 218 40 89 chr9 83985892 83985958 -33876669 - MIR SINE MIR -30 232 171 644 194 60 116 chr9 83985958 83986190 -33876437 + MER20 DNA MER1_type 1 219 0 224 218 40 89 chr9 83986190 83986224 -33876403 - MIR SINE MIR -91 171 137 736 226 80 5 chr9 83986833 83987045 -33875582 + MIR SINE MIR 10 237 -25 357 297 172 29 chr9 83987386 83987595 -33875032 + MIR SINE MIR 8 246 -16 387 304 138 6 chr9 83987763 83987944 -33874683 + MIR SINE MIR 58 262 0 2296 113 0 3 chr9 83988061 83988372 -33874255 - AluSg SINE Alu 0 310 1 724 277 94 21 chr9 83988484 83988823 -33873804 - L1ME4a LINE L1 -218 5903 5540 472 81 81 0 chr9 83989095 83989169 -33873458 - L1MA9 LINE L1 -5 6307 6228 294 275 56 35 chr9 83989438 83989516 -33873111 - L1ME4a LINE L1 0 6121 6037 2435 81 3 7 chr9 83989516 83989824 -33872803 - AluSx SINE Alu 0 312 6 294 275 56 35 chr9 83989824 83989887 -33872740 - L1ME4a LINE L1 -84 6037 5977 773 125 14 168 chr9 83989892 83990100 -33872527 - AluSg/x SINE Alu -37 275 100 987 73 41 0 chr9 83990103 83990226 -33872401 - AluSq/x SINE Alu -181 132 5 192 97 0 0 chr9 83990313 83990344 -33872283 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 700 216 47 66 chr9 83990389 83990709 -33871918 + L1ME4a LINE L1 5774 6087 -34 716 230 20 0 chr9 83990755 83990903 -33871724 + FRAM SINE Alu 6 156 -20 1937 145 0 3 chr9 83990910 83991214 -33871413 - AluSx SINE Alu -9 303 1 220 322 103 84 chr9 83991828 83992101 -33870526 - L2 LINE L2 -35 3237 2960 410 297 161 7 chr9 83992922 83993077 -33869550 + MIR SINE MIR 3 181 -81 288 0 0 0 chr9 83993418 83993450 -33869177 + (CA)n Simple_repeat Simple_repeat 2 33 0 2121 100 0 0 chr9 83993515 83993786 -33868841 + AluSx SINE Alu 34 304 -8 2099 137 7 0 chr9 83994215 83994514 -33868113 - AluSx SINE Alu -11 301 1 598 313 22 13 chr9 83995392 83995616 -33867011 - MIR SINE MIR -12 250 25 208 276 54 60 chr9 83996146 83996251 -33866376 + MIR3 SINE MIR 4 109 -99 2318 102 0 0 chr9 83996251 83996556 -33866071 - AluSq SINE Alu -8 305 1 208 276 54 60 chr9 83996556 83996635 -33865992 + MIR3 SINE MIR 109 187 -21 743 91 27 0 chr9 83997250 83997360 -33865267 - L1MA4A LINE L1 -92 6211 6099 252 256 90 38 chr9 83997542 83997675 -33864952 + L2 LINE L2 3127 3266 -6 1071 170 55 41 chr9 83997783 83998054 -33864573 + ORSL DNA AcHobo 1 275 0 861 170 16 33 chr9 83999099 83999281 -33863346 + MER97a DNA MER1_type? 1 179 -715 261 0 0 0 chr9 83999452 83999481 -33863146 + (T)n Simple_repeat Simple_repeat 1 29 0 263 237 13 13 chr9 83999953 84000029 -33862598 + MIR SINE MIR 187 262 0 201 250 0 0 chr9 84000128 84000168 -33862459 + L2 LINE L2 3255 3294 -19 2220 104 0 0 chr9 84000338 84000641 -33861986 - AluSc SINE Alu 0 303 1 1035 153 0 48 chr9 84000975 84001164 -33861463 - FRAM SINE Alu -4 172 1 920 294 181 27 chr9 84001385 84002083 -33860544 - L3 LINE CR1 -124 1453 649 201 250 0 0 chr9 84002196 84002236 -33860391 + L2 LINE L2 3255 3294 -19 862 117 0 0 chr9 84002406 84002526 -33860101 - AluSc SINE Alu 0 309 190 182 167 0 0 chr9 84002746 84002776 -33859851 - MIR3 SINE MIR -28 180 151 437 295 8 0 chr9 84002795 84002924 -33859703 - L2 LINE L2 0 3313 3184 185 224 41 0 chr9 84002918 84002967 -33859660 - MIR SINE MIR -77 131 81 * 263 226 0 0 chr9 84004023 84004076 -33858551 + 5S rRNA rRNA 67 119 -2 283 330 52 0 chr9 84004078 84004193 -33858434 + L2 LINE L2 3147 3267 -5 473 222 111 30 chr9 84004419 84004554 -33858073 + MER69 DNA AcHobo 4 149 -2377 231 138 69 52 chr9 84004573 84004631 -33857996 + MER69 DNA AcHobo 2468 2526 0 1902 86 0 141 chr9 84006138 84006346 -33856281 - AluSg SINE Alu 0 300 159 2782 68 16 8 chr9 84006346 84006715 -33855912 - SVA Other Other -342 1044 673 1902 86 0 141 chr9 84006715 84006854 -33855773 - AluSg SINE Alu -141 159 2 1732 119 0 105 chr9 84006866 84007210 -33855417 - AluSg SINE Alu -2 308 1 794 221 70 0 chr9 84007499 84007712 -33854915 + MIR SINE MIR 3 230 -32 308 340 0 0 chr9 84007779 84007876 -33854751 - MIR SINE MIR -71 137 41 411 283 48 48 chr9 84008832 84009043 -33853584 - MIR SINE MIR -39 223 2 454 245 155 45 chr9 84009143 84009343 -33853284 + MIR SINE MIR 11 232 -30 23 78 0 0 chr9 84009383 84009434 -33853193 + AT_rich Low_complexity Low_complexity 1 51 0 209 315 13 27 chr9 84009641 84009790 -33852837 + CT-rich Low_complexity Low_complexity 3 149 0 1035 221 96 70 chr9 84010106 84010366 -33852261 - MSTC LTR MaLR 0 428 151 2751 88 58 23 chr9 84010366 84010799 -33851828 + LTR7 LTR ERV1 1 448 -2 1035 221 96 70 chr9 84010799 84010955 -33851672 - MSTC LTR MaLR -277 151 1 308 290 80 10 chr9 84011568 84011668 -33850959 - MIR SINE MIR -115 147 41 297 260 14 37 chr9 84012377 84012501 -33850126 + CT-rich Low_complexity Low_complexity 4 210 0 359 242 40 133 chr9 84013049 84013088 -33849539 - MIR SINE MIR -62 146 105 1966 79 30 0 chr9 84013088 84013355 -33849272 - AluSp SINE Alu -7 306 32 359 242 40 133 chr9 84013355 84013510 -33849117 - MIR SINE MIR -103 105 11 279 233 41 0 chr9 84013523 84013596 -33849031 - MIR3 SINE MIR -17 191 116 180 176 0 0 chr9 84013903 84013937 -33848690 + (CATA)n Simple_repeat Simple_repeat 2 35 0 364 325 8 8 chr9 84014075 84014201 -33848426 - MIR SINE MIR -1 261 136 221 148 0 37 chr9 84014431 84014485 -33848142 + (TTCA)n Simple_repeat Simple_repeat 4 55 0 341 248 94 158 chr9 84014487 84014677 -33847950 - L2 LINE L2 0 3272 3106 1916 103 10 30 chr9 84014677 84014978 -33847649 + AluSq SINE Alu 2 296 -17 341 248 94 158 chr9 84014978 84015085 -33847542 - L2 LINE L2 -166 3106 2994 330 348 43 37 chr9 84015709 84015881 -33846746 - MIR SINE MIR -61 147 13 528 181 53 122 chr9 84015881 84015928 -33846699 - MER5B DNA MER1_type 0 178 129 1594 127 37 0 chr9 84015928 84016173 -33846454 - AluSx SINE Alu -10 302 49 528 181 53 122 chr9 84016173 84016313 -33846314 - MER5B DNA MER1_type -49 129 4 330 348 43 37 chr9 84016313 84016327 -33846300 - MIR SINE MIR -195 13 1 296 264 226 9 chr9 84016880 84016986 -33845641 - MIR SINE MIR -60 148 20 248 309 151 8 chr9 84017286 84017408 -33845219 - L2 LINE L2 -8 3264 3125 461 333 5 46 chr9 84017408 84017603 -33845024 + MER5A DNA MER1_type 1 187 -2 369 341 54 24 chr9 84018213 84018380 -33844247 - MIR3 SINE MIR -32 176 5 512 187 131 0 chr9 84018611 84018718 -33843909 + MER5A DNA MER1_type 1 121 -68 630 0 0 0 chr9 84018847 84018917 -33843710 + (CCCGG)n Simple_repeat Simple_repeat 5 74 0 458 129 0 0 chr9 84018917 84018979 -33843648 + MER5A DNA MER1_type 128 189 0 1938 137 0 22 chr9 84019140 84019455 -33843172 + AluSg SINE Alu 1 308 -2 348 24 0 0 chr9 84019458 84019499 -33843128 + (TG)n Simple_repeat Simple_repeat 2 42 0 2006 115 3 0 chr9 84020510 84020796 -33841831 + AluSx SINE Alu 18 304 -8 361 213 21 53 chr9 84021350 84021444 -33841183 - LTR16A LTR ERVL -46 404 314 2213 98 3 13 chr9 84021473 84021780 -33840847 - AluSx SINE Alu -8 304 1 232 260 260 0 chr9 84022065 84022165 -33840462 - L2 LINE L2 -1 3312 3187 1661 106 4 0 chr9 84024017 84024253 -33838374 + AluSq SINE Alu 1 237 -76 1631 140 11 4 chr9 84024254 84024526 -33838101 - AluSx SINE Alu -38 274 1 438 296 84 30 chr9 84025779 84025982 -33836645 + MIR SINE MIR 46 259 -3 1843 134 0 26 chr9 84026044 84026350 -33836277 + AluSx SINE Alu 1 298 -14 271 222 32 0 chr9 84026605 84026668 -33835959 - L2 LINE L2 0 3313 3249 2368 225 59 29 chr9 84027084 84027680 -33834947 - MLT1E2 LTR MaLR -8 618 5 303 318 73 0 chr9 84027913 84028023 -33834604 - L2 LINE L2 -8 3305 3188 422 303 102 78 chr9 84029724 84030146 -33832481 - L2 LINE L2 0 3272 2841 1948 128 0 0 chr9 84031127 84031429 -33831198 + AluSx SINE Alu 1 302 0 305 250 145 33 chr9 84031677 84031829 -33830798 - L1ME1 LINE L1 -289 5877 5709 382 251 110 55 chr9 84032977 84033077 -33829550 - MER5A DNA MER1_type -3 186 72 2077 127 0 0 chr9 84033077 84033376 -33829251 - AluSx SINE Alu -13 299 1 382 251 110 55 chr9 84033376 84033438 -33829189 - MER5A DNA MER1_type -117 72 15 344 255 87 16 chr9 84033453 84033637 -33828990 + MER113 DNA MER1_type? 18 214 -307 290 261 26 17 chr9 84033753 84033868 -33828759 + (TA)n Simple_repeat Simple_repeat 2 117 0 426 361 0 18 chr9 84034259 84034428 -33828199 - MIR SINE MIR -19 243 78 265 242 0 0 chr9 84037150 84037216 -33825411 - L1ME4a LINE L1 -4 6117 6052 512 284 68 12 chr9 84038063 84038225 -33824402 - MIR SINE MIR -79 183 13 822 268 134 24 chr9 84038401 84038976 -33823651 - L2 LINE L2 -14 3299 2646 247 109 65 0 chr9 84039445 84039491 -33823136 + L2 LINE L2 3265 3313 0 1310 199 0 19 chr9 84039509 84039814 -33822813 + AluJo SINE Alu 24 323 0 554 241 142 6 chr9 84040406 84040568 -33822059 - MER5A DNA MER1_type -2 187 4 219 247 13 26 chr9 84040659 84040736 -33821891 + CT-rich Low_complexity Low_complexity 5 80 0 278 271 86 43 chr9 84041084 84041224 -33821403 + L2 LINE L2 3127 3272 0 290 144 0 0 chr9 84041287 84041344 -33821283 + L1MA9 LINE L1 5880 5936 -232 1568 140 25 7 chr9 84041347 84041633 -33820994 + L1MA9 LINE L1 6021 6311 -1 325 284 169 7 chr9 84041797 84041945 -33820682 - MIR SINE MIR -70 192 21 2326 53 0 26 chr9 84042627 84042929 -33819698 - AluY SINE Alu -13 298 5 1972 82 82 0 chr9 84042938 84043217 -33819410 - AluSp SINE Alu -11 302 1 424 304 98 37 chr9 84043420 84043634 -33818993 - MIR SINE MIR -11 251 25 236 273 10 10 chr9 84045847 84045946 -33816681 - L2 LINE L2 -1003 2311 2213 2053 130 7 0 chr9 84045993 84046294 -33816333 - AluSx SINE Alu -9 303 1 262 163 0 0 chr9 84046767 84046810 -33815817 - L1MC4a LINE L1 -1374 6434 6392 450 258 114 45 chr9 84046856 84047189 -33815438 + L1ME4a LINE L1 5526 5881 -240 474 266 16 88 chr9 84047623 84047781 -33814846 + MIR SINE MIR 5 148 -114 1643 197 3 0 chr9 84047781 84048090 -33814537 + AluJb SINE Alu 3 312 0 474 266 16 88 chr9 84048090 84048123 -33814504 + MIR SINE MIR 148 182 -80 400 294 49 54 chr9 84048211 84048395 -33814232 + MIR SINE MIR 9 191 -71 271 355 9 9 chr9 84048766 84048873 -33813754 + L2 LINE L2 3166 3272 0 482 230 116 50 chr9 84050079 84050245 -33812382 - MIR3 SINE MIR -30 178 1 640 255 104 72 chr9 84050364 84050795 -33811832 - LTR16A LTR ERVL 0 450 6 263 286 214 32 chr9 84050922 84051076 -33811551 - MIR SINE MIR 0 262 81 282 270 0 80 chr9 84051497 84051597 -33811030 + MIR SINE MIR 53 144 -64 430 327 12 18 chr9 84053560 84053725 -33808902 - MIR SINE MIR -50 212 49 554 248 183 20 chr9 84054110 84054312 -33808315 + MIR SINE MIR 22 256 -6 313 375 23 35 chr9 84055217 84055478 -33807149 + L2 LINE L2 2838 3095 -177 2584 212 28 21 chr9 84055490 84056060 -33806567 - L1MD2 LINE L1 -12 6347 5774 2293 94 0 0 chr9 84057753 84058061 -33804566 - AluSc SINE Alu -1 308 1 459 257 166 23 chr9 84059772 84059947 -33802680 + MIR SINE MIR 61 260 -2 358 311 68 34 chr9 84060798 84061004 -33801623 - MIR SINE MIR -1 261 49 573 242 153 0 chr9 84061141 84061298 -33801329 + MER5A DNA MER1_type 9 189 0 255 173 0 0 chr9 84062350 84062402 -33800225 + (TCCA)n Simple_repeat Simple_repeat 2 53 0 209 308 65 65 chr9 84062406 84062513 -33800114 - L2 LINE L2 0 3272 3166 477 138 69 0 chr9 84063349 84063436 -33799191 + MER5A DNA MER1_type 14 106 -83 399 323 8 15 chr9 84063769 84063899 -33798728 - MER5A DNA MER1_type -1 188 60 2249 103 3 13 chr9 84064151 84064462 -33798165 - AluSp SINE Alu -5 308 1 2120 119 7 7 chr9 84065463 84065765 -33796862 + AluSq SINE Alu 1 302 -11 951 241 79 9 chr9 84066672 84066900 -33795727 + MIR SINE MIR 2 245 -17 527 196 36 27 chr9 84067259 84067371 -33795256 + MIR SINE MIR 17 129 -133 305 245 113 9 chr9 84067782 84067888 -33794739 - MIR SINE MIR -62 146 30 231 36 0 0 chr9 84069009 84069037 -33793590 + (TA)n Simple_repeat Simple_repeat 1 28 0 222 298 0 0 chr9 84069324 84069381 -33793246 + (TATATG)n Simple_repeat Simple_repeat 3 59 0 393 341 90 60 chr9 84070406 84070893 -33791734 + L3 LINE CR1 117 618 -959 35 63 0 0 chr9 84071238 84071301 -33791326 + AT_rich Low_complexity Low_complexity 1 63 0 215 365 29 39 chr9 84071825 84071917 -33790710 - MIR SINE MIR -75 133 41 2241 114 13 3 chr9 84071917 84072225 -33790402 - AluSq SINE Alu -2 311 1 215 365 29 39 chr9 84072225 84072236 -33790391 - MIR SINE MIR -167 41 31 399 306 125 12 chr9 84072324 84072484 -33790143 + MIR3 SINE MIR 16 193 -15 2019 155 0 0 chr9 84072679 84072975 -33789652 + AluSx SINE Alu 7 302 -10 309 344 86 0 chr9 84073649 84073800 -33788827 + MIR SINE MIR 49 212 -50 2312 101 10 0 chr9 84074140 84074447 -33788180 + AluSq SINE Alu 1 310 -3 2166 112 0 7 chr9 84076203 84076498 -33786129 + AluSq SINE Alu 1 293 -20 2238 93 0 7 chr9 84076527 84076816 -33785811 + AluSg SINE Alu 1 287 -23 220 211 26 105 chr9 84076946 84077022 -33785605 + MIR SINE MIR 82 151 -57 679 236 39 33 chr9 84077707 84077889 -33784738 + MIR SINE MIR 64 246 -16 2060 117 28 0 chr9 84081090 84081380 -33781247 + AluSc SINE Alu 1 298 -11 594 260 127 39 chr9 84081998 84082107 -33780520 - L1ME4a LINE L1 -49 6072 5974 683 175 15 15 chr9 84082107 84082244 -33780383 - L1MB7 LINE L1 -9 6175 6039 594 260 127 39 chr9 84082244 84082545 -33780082 - L1ME4a LINE L1 -147 5974 5626 2343 84 0 7 chr9 84082706 84083003 -33779624 - AluSq SINE Alu -18 295 1 892 217 47 54 chr9 84083038 84083296 -33779331 + MER112 DNA MER1_type 1 256 0 538 271 143 21 chr9 84085912 84086192 -33776435 - L1MC4a LINE L1 -1879 5929 5616 449 265 144 28 chr9 84086457 84086638 -33775989 + MIR SINE MIR 2 203 -59 607 283 96 5 chr9 84086643 84086862 -33775765 + MIR SINE MIR 12 250 -12 250 260 228 8 chr9 84087349 84087472 -33775155 + MIR SINE MIR 49 198 -64 241 263 0 0 chr9 84087475 84087532 -33775095 - MIR SINE MIR -1 261 205 2095 109 0 7 chr9 84087704 84087987 -33774640 + AluSc SINE Alu 1 281 -28 192 40 0 0 chr9 84088467 84088492 -33774135 + (CAATG)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr9 84089781 84089802 -33772825 + AT_rich Low_complexity Low_complexity 1 21 0 2168 109 13 13 chr9 84092585 84092896 -33769731 - AluSx SINE Alu -1 311 1 384 238 111 16 chr9 84093059 84093185 -33769442 - MIR SINE MIR -60 202 65 1645 302 181 31 chr9 84093249 84094116 -33768511 - L2 LINE L2 0 3313 2577 2051 122 14 0 chr9 84094116 84094404 -33768223 + AluSq SINE Alu 1 292 -21 1645 302 181 31 chr9 84094404 84094881 -33767746 - L2 LINE L2 -736 2577 1735 355 263 168 21 chr9 84095774 84095964 -33766663 - L2 LINE L2 -1 3312 3095 746 152 101 32 chr9 84095964 84096269 -33766358 - MLT1A2 LTR MaLR 0 374 1 3158 258 186 25 chr9 84096281 84097801 -33764826 - L2 LINE L2 -225 3088 1314 231 330 0 11 chr9 84097890 84097981 -33764646 - MARNA DNA Mariner -251 335 246 39 85 0 0 chr9 84100292 84100339 -33762288 + AT_rich Low_complexity Low_complexity 1 47 0 6689 96 3 12 chr9 84100605 84101688 -33760939 + L1PA14 LINE L1 5092 6152 -9 2263 115 0 0 chr9 84103431 84103736 -33758891 - AluSx SINE Alu -7 305 1 24 53 0 0 chr9 84103765 84103803 -33758824 + AT_rich Low_complexity Low_complexity 1 38 0 1017 183 22 38 chr9 84104151 84104446 -33758181 - MER2 DNA MER2_type -1 344 2 182 213 43 21 chr9 84105099 84105146 -33757481 - L3 LINE CR1 -1 1576 1529 2178 72 3 30 chr9 84107473 84107778 -33754849 + AluSg SINE Alu 1 297 -13 1577 71 5 5 chr9 84108527 84108737 -33753890 - AluY SINE Alu -19 292 83 607 243 42 66 chr9 84108913 84109072 -33753555 - HAL1 LINE L1 -11 2496 2344 2269 98 0 0 chr9 84109072 84109368 -33753259 - AluSx SINE Alu -16 296 1 607 243 42 66 chr9 84109368 84109467 -33753160 - HAL1 LINE L1 -163 2344 2244 4955 128 69 7 chr9 84109491 84110894 -33751733 - L1MA5A LINE L1 -120 6177 4683 1192 223 55 3 chr9 84110894 84111204 -33751423 - Charlie4a DNA MER1_type -157 351 26 463 244 173 6 chr9 84111234 84111390 -33751237 - L1ME LINE L1 -509 5661 5480 21 0 0 0 chr9 84111879 84111900 -33750727 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 84112313 84112334 -33750293 + AT_rich Low_complexity Low_complexity 1 21 0 2445 78 0 34 chr9 84113319 84113641 -33748986 - AluSq SINE Alu -2 311 1 222 337 95 47 chr9 84113705 84113874 -33748753 - MIR3 SINE MIR -13 195 19 295 312 28 21 chr9 84114112 84114253 -33748374 - L1ME LINE L1 -299 5822 5681 896 130 0 14 chr9 84114411 84114549 -33748078 - AluJo SINE Alu -176 136 1 246 308 8 17 chr9 84114549 84114669 -33747958 + (TATATG)n Simple_repeat Simple_repeat 4 122 0 1822 90 82 0 chr9 84114980 84115236 -33747391 + AluSx SINE Alu 28 304 -8 22 0 0 0 chr9 84115599 84115621 -33747006 + AT_rich Low_complexity Low_complexity 1 22 0 276 259 0 89 chr9 84115770 84115905 -33746722 - L1ME LINE L1 -1088 5058 4936 208 253 53 53 chr9 84115992 84116067 -33746560 - L2 LINE L2 -965 2349 2275 1703 144 25 28 chr9 84116115 84116399 -33746228 - AluJo SINE Alu -19 293 11 253 228 0 13 chr9 84116528 84116607 -33746020 + (TA)n Simple_repeat Simple_repeat 1 78 0 24 32 0 0 chr9 84116703 84116734 -33745893 + AT_rich Low_complexity Low_complexity 1 31 0 2220 101 3 3 chr9 84116793 84117089 -33745538 - AluSq SINE Alu -17 296 1 613 220 78 31 chr9 84119372 84119563 -33743064 + MIR SINE MIR 63 262 0 2563 104 16 39 chr9 84121230 84121616 -33741011 - MER51B LTR ERV1 0 377 1 216 97 0 0 chr9 84122356 84122387 -33740240 + (CA)n Simple_repeat Simple_repeat 2 32 0 24 32 0 0 chr9 84122830 84122861 -33739766 + AT_rich Low_complexity Low_complexity 1 31 0 443 249 44 89 chr9 84124908 84125201 -33737426 - HAL1 LINE L1 -110 2397 2118 596 254 147 9 chr9 84125491 84125723 -33736904 - L2 LINE L2 0 3313 3050 481 266 79 61 chr9 84125824 84126102 -33736525 - HAL1 LINE L1 -1676 831 549 427 260 132 55 chr9 84126106 84126325 -33736302 - MLT1J2 LTR MaLR 0 450 215 235 271 160 33 chr9 84126410 84126591 -33736036 - MIR SINE MIR -10 252 49 196 296 19 0 chr9 84126891 84126945 -33735682 - L2 LINE L2 -234 3079 3025 1472 188 57 96 chr9 84127472 84127983 -33734644 - Charlie4a DNA MER1_type 0 508 18 394 214 11 11 chr9 84128014 84128103 -33734524 - L1ME LINE L1 -503 5661 5573 21 36 0 0 chr9 84128670 84128698 -33733929 + AT_rich Low_complexity Low_complexity 1 28 0 185 404 0 0 chr9 84128728 84128780 -33733847 - L2 LINE L2 -10 3262 3211 2553 50 0 0 chr9 84129860 84130159 -33732468 + AluY SINE Alu 2 300 -11 21 0 0 0 chr9 84130282 84130303 -33732324 + AT_rich Low_complexity Low_complexity 1 21 0 1886 123 53 7 chr9 84130314 84130598 -33732029 + AluSq SINE Alu 2 298 -15 188 322 34 0 chr9 84131007 84131066 -33731561 - MIR SINE MIR -86 122 62 358 270 166 7 chr9 84131159 84131515 -33731112 - L1MC/D LINE L1 -748 5398 5284 234 131 33 98 chr9 84131525 84131586 -33731041 - AluSp SINE Alu -111 192 136 2136 97 0 35 chr9 84131623 84131933 -33730694 + AluSg SINE Alu 1 299 -11 652 308 72 44 chr9 84131933 84133009 -33729618 - L1MC/D LINE L1 -882 5264 4156 308 346 0 0 chr9 84133022 84133126 -33729501 + CT-rich Low_complexity Low_complexity 2 105 0 793 115 0 54 chr9 84133407 84133426 -33729201 - L1MC1 LINE L1 -1 6332 6314 2152 99 27 7 chr9 84133426 84133719 -33728908 + AluSq SINE Alu 1 299 -14 793 115 0 54 chr9 84133719 84133829 -33728798 - L1MC1 LINE L1 -19 6314 6210 765 307 110 62 chr9 84133892 84134044 -33728583 - L2 LINE L2 -4 3268 3125 2307 80 0 3 chr9 84134044 84134333 -33728294 + AluY SINE Alu 12 299 -12 765 307 110 62 chr9 84134333 84134760 -33727867 - L2 LINE L2 -147 3125 2694 242 109 65 0 chr9 84135781 84135827 -33726800 + L2 LINE L2 3265 3313 0 1390 199 0 19 chr9 84135845 84136150 -33726477 + AluJo SINE Alu 24 323 0 24 0 0 0 chr9 84136410 84136434 -33726193 + AT_rich Low_complexity Low_complexity 1 24 0 2293 113 0 0 chr9 84136437 84136747 -33725880 + AluSg SINE Alu 1 310 0 482 175 194 0 chr9 84137648 84137751 -33724876 + MLT1B LTR MaLR 268 390 0 305 305 19 0 chr9 84137773 84137878 -33724749 - MLT1J LTR MaLR -178 333 227 342 263 0 12 chr9 84138065 84138145 -33724482 - MLT1L LTR MaLR -536 79 1 1276 115 6 0 chr9 84138428 84138602 -33724025 + AluSg/x SINE Alu 120 294 -18 325 228 29 96 chr9 84138696 84138832 -33723795 + L1ME LINE L1 5670 5796 -366 356 243 199 22 chr9 84138987 84139123 -33723504 + MER5A DNA MER1_type 1 160 -29 1080 272 165 31 chr9 84139319 84139768 -33722859 - MLT1J LTR MaLR -2 509 1 446 240 30 0 chr9 84139896 84139996 -33722631 + MER5A DNA MER1_type 7 109 -80 1182 139 6 0 chr9 84140527 84140700 -33721927 + AluSg/x SINE Alu 120 293 -19 919 175 10 53 chr9 84140702 84140908 -33721719 + MER51C LTR ERV1 444 640 0 380 218 113 0 chr9 84141093 84141216 -33721411 - MIR SINE MIR -63 145 53 432 358 99 13 chr9 84141674 84141906 -33720721 + MIR SINE MIR 11 262 0 361 276 26 9 chr9 84142960 84143076 -33719551 - MIR SINE MIR -46 216 99 213 39 0 0 chr9 84143169 84143195 -33719432 + (T)n Simple_repeat Simple_repeat 1 26 0 491 257 160 0 chr9 84143872 84144047 -33718580 + MIR SINE MIR 45 247 -15 736 130 0 0 chr9 84144454 84144562 -33718065 - AluSp/q SINE Alu 0 313 206 2133 188 11 3 chr9 84144687 84145048 -33717579 - MLT1A1 LTR MaLR 0 365 2 1533 227 16 0 chr9 84145170 84145474 -33717153 + AluJb SINE Alu 1 309 -3 2078 137 0 7 chr9 84145626 84145925 -33716702 - AluSx SINE Alu -15 297 1 480 322 24 39 chr9 84145940 84146145 -33716482 - MIR SINE MIR -59 203 2 350 384 28 0 chr9 84146309 84146486 -33716141 - L3 LINE CR1 -486 1091 910 420 289 80 45 chr9 84146520 84146721 -33715906 + MIR SINE MIR 47 254 -8 593 289 10 46 chr9 84146851 84146887 -33715740 + MIR SINE MIR 21 57 -205 2142 115 0 11 chr9 84146887 84147205 -33715422 - AluSx SINE Alu 0 315 1 593 289 10 46 chr9 84147205 84147361 -33715266 + MIR SINE MIR 57 207 -55 2329 96 0 0 chr9 84147781 84148082 -33714545 - AluSx SINE Alu -11 301 1 351 281 123 0 chr9 84148288 84148402 -33714225 - MIR3 SINE MIR -39 169 42 25 31 0 0 chr9 84148671 84148703 -33713924 + GC_rich Low_complexity Low_complexity 1 32 0 29 60 0 0 chr9 84149196 84149246 -33713381 + GC_rich Low_complexity Low_complexity 1 50 0 273 289 99 13 chr9 84149528 84149694 -33712933 - MIR SINE MIR -12 250 68 412 279 88 27 chr9 84149772 84149919 -33712708 - MIR SINE MIR -50 212 57 1323 200 66 25 chr9 84150451 84150771 -33711856 - MLT1A2 LTR MaLR -41 333 1 410 272 54 27 chr9 84151373 84151557 -33711070 - MIR SINE MIR -18 244 56 293 270 0 0 chr9 84151783 84151846 -33710781 + L2 LINE L2 3251 3313 0 2271 106 0 7 chr9 84151971 84152273 -33710354 - AluSg SINE Alu -10 300 1 183 337 81 0 chr9 84152562 84152648 -33709979 + MIR SINE MIR 53 145 -63 1118 74 7 0 chr9 84152651 84152786 -33709841 + AluSq/x SINE Alu 2 137 -175 2075 103 35 3 chr9 84152786 84153068 -33709559 + AluSg SINE Alu 1 291 -19 240 159 4 0 chr9 84153074 84153136 -33709491 + L1MC4 LINE L1 2006 6983 -1339 459 202 0 0 chr9 84153136 84153235 -33709392 + (TA)n Simple_repeat Simple_repeat 2 100 0 994 138 0 0 chr9 84153235 84153380 -33709247 + AluSp SINE Alu 136 280 -33 1654 96 22 44 chr9 84154022 84154103 -33708524 + L1MA2 LINE L1 6041 6122 -182 2040 111 9 78 chr9 84154103 84154436 -33708191 - AluSg SINE Alu 0 310 1 2309 102 3 3 chr9 84154436 84154741 -33707886 - AluSx SINE Alu -7 305 1 1654 96 22 44 chr9 84154741 84154928 -33707699 + L1MA2 LINE L1 6120 6304 0 252 0 0 0 chr9 84155072 84155100 -33707527 + (A)n Simple_repeat Simple_repeat 1 28 0 1342 111 0 0 chr9 84155638 84155846 -33706781 + AluSg/x SINE Alu 102 309 0 1232 169 42 19 chr9 84155848 84156109 -33706518 - MER4-int LTR ERV1 -2604 3994 3728 1313 167 30 64 chr9 84156165 84156572 -33706055 - MER4-int LTR ERV1 -2614 4062 3643 1879 144 3 7 chr9 84156572 84156856 -33705771 - AluSx SINE Alu -29 283 1 1313 167 30 64 chr9 84156856 84156928 -33705699 - MER4-int LTR ERV1 -3033 3643 3570 1919 92 0 4 chr9 84156928 84157179 -33705448 - AluSx SINE Alu -8 304 55 1499 200 93 55 chr9 84157311 84157411 -33705216 - Charlie7 DNA MER1_type -452 2160 2065 2370 92 0 0 chr9 84157411 84157703 -33704924 - AluSc SINE Alu -17 292 1 2108 125 3 0 chr9 84157703 84157992 -33704635 - AluSx SINE Alu -22 290 1 1499 200 93 55 chr9 84157992 84158385 -33704242 - Charlie7 DNA MER1_type -546 2066 1647 691 200 0 0 chr9 84158386 84158496 -33704131 + FLAM_C SINE Alu 2 111 -32 1833 145 0 0 chr9 84158538 84158807 -33703820 - AluSg SINE Alu -3 307 39 265 236 0 28 chr9 84158907 84158979 -33703648 - L1ME LINE L1 -263 5858 5789 585 214 31 31 chr9 84159301 84159460 -33703167 - L1ME LINE L1 -314 5807 5649 247 301 98 65 chr9 84159955 84160273 -33702354 + MLT1J1 LTR MaLR 31 332 -77 2266 96 3 0 chr9 84160273 84160564 -33702063 - AluSg SINE Alu -18 292 1 209 355 0 16 chr9 84160635 84160697 -33701930 - MIR SINE MIR -186 76 16 2073 110 31 3 chr9 84160827 84161117 -33701510 + AluSg SINE Alu 1 298 -12 1897 100 4 4 chr9 84161832 84162083 -33700544 + AluSg SINE Alu 1 251 -59 556 158 58 33 chr9 84162209 84162329 -33700298 + MER49-int LTR ERV1 4054 4176 -2155 2124 101 0 57 chr9 84162366 84162682 -33699945 + AluSg SINE Alu 1 298 -12 1618 98 25 110 chr9 84162830 84163176 -33699451 + MER49-int LTR ERV1 3786 6136 -622 1408 174 34 50 chr9 84163173 84163263 -33699364 + MER49-int LTR ERV1 6441 6531 -570 * 2211 107 3 19 chr9 84163263 84163581 -33699046 - AluSp SINE Alu 0 313 1 1408 174 34 50 chr9 84163581 84163805 -33698822 + MER49-int LTR ERV1 6531 7097 -4 1349 130 17 38 chr9 84163808 84164046 -33698581 + MER49 LTR ERV1 1 233 -690 1963 141 0 26 chr9 84164159 84164463 -33698164 - AluSq SINE Alu -17 296 1 412 345 64 0 chr9 84164544 84164715 -33697912 + HUERS-P1 LTR ERV1 6076 6257 -6 1171 139 5 34 chr9 84164719 84164928 -33697699 + LTR26 LTR ERV1 3 205 -398 2199 137 24 90 chr9 84165098 84165243 -33697384 + LTR26 LTR ERV1 210 363 -240 2374 110 0 3 chr9 84165243 84165551 -33697076 - AluSx SINE Alu 0 312 6 2199 137 24 90 chr9 84165551 84165625 -33697002 + LTR26 LTR ERV1 363 440 -163 2224 136 0 0 chr9 84165625 84165935 -33696692 - AluSx SINE Alu -2 310 1 2199 137 24 90 chr9 84165935 84166136 -33696491 + LTR26 LTR ERV1 440 603 0 198 252 118 67 chr9 84166635 84166754 -33695873 - L2 LINE L2 -181 3091 2967 1732 116 82 4 chr9 84166838 84167106 -33695521 + AluSq SINE Alu 3 291 -22 2216 253 101 12 chr9 84167231 84167981 -33694646 - Charlie7 DNA MER1_type -1684 928 112 2108 128 0 0 chr9 84168062 84168367 -33694260 - AluSx SINE Alu 0 305 1 267 31 0 0 chr9 84168495 84168527 -33694100 + (CA)n Simple_repeat Simple_repeat 2 33 0 206 260 68 0 chr9 84168614 84168687 -33693940 - L2 LINE L2 0 3272 3195 221 204 20 0 chr9 84170248 84170297 -33692330 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 1245 174 13 153 chr9 84170316 84170365 -33692262 - MLT1A1 LTR MaLR 0 457 403 2364 98 0 3 chr9 84170365 84170662 -33691965 - AluSx SINE Alu -16 296 1 1245 174 13 153 chr9 84170662 84170684 -33691943 - MLT1A1 LTR MaLR -54 403 380 2162 121 16 3 chr9 84170684 84170989 -33691638 - AluSg SINE Alu -1 309 1 1245 174 13 153 chr9 84170989 84171353 -33691274 - MLT1A1 LTR MaLR -77 380 1 2022 136 34 0 chr9 84171451 84171745 -33690882 - AluSx SINE Alu -8 304 1 397 288 120 94 chr9 84172195 84172619 -33690008 + MLT1K LTR MaLR 147 581 -7 2404 113 3 0 chr9 84172620 84172956 -33689671 + AluSx SINE Alu 1 337 0 1966 148 6 25 chr9 84173425 84173743 -33688884 - AluSx SINE Alu 0 312 1 266 308 54 42 chr9 84174288 84174456 -33688171 + MIR SINE MIR 9 185 -59 2469 62 0 0 chr9 84174467 84174757 -33687870 + AluSc SINE Alu 1 290 -19 2674 43 0 0 chr9 84174757 84175061 -33687566 + AluY SINE Alu 1 304 -7 207 0 0 0 chr9 84175738 84175761 -33686866 + (CACCAT)n Simple_repeat Simple_repeat 1 23 0 264 274 0 14 chr9 84176601 84176674 -33685953 + MIR SINE MIR 89 160 -102 672 281 10 5 chr9 84176691 84176887 -33685740 + MIR SINE MIR 66 262 0 350 257 46 13 chr9 84177075 84177198 -33685429 - MIR SINE MIR -59 149 40 2269 95 14 0 chr9 84177369 84177665 -33684962 + AluSx SINE Alu 1 300 -12 363 261 75 8 chr9 84178074 84178208 -33684419 + MIR SINE MIR 87 229 -33 1243 202 101 60 chr9 84178620 84178716 -33683911 - MER63B DNA MER1_type -628 434 343 2360 95 0 0 chr9 84178716 84179012 -33683615 + AluSx SINE Alu 1 296 -16 1243 202 101 60 chr9 84179012 84179189 -33683438 - MER63B DNA MER1_type -719 343 175 2305 103 0 19 chr9 84179189 84179499 -33683128 + AluSg SINE Alu 1 304 -6 1243 202 101 60 chr9 84179499 84179640 -33682987 - MER63B DNA MER1_type -887 175 2 2267 113 7 0 chr9 84180170 84180471 -33682156 - AluSq SINE Alu -10 303 1 2295 117 0 0 chr9 84180508 84180807 -33681820 - AluSx SINE Alu -13 299 1 399 207 74 113 chr9 84180811 84181014 -33681613 + L2 LINE L2 3104 3298 -15 301 230 58 11 chr9 84181054 84181141 -33681486 + MIR SINE MIR 50 140 -68 180 229 0 0 chr9 84182113 84182148 -33680479 - MIR SINE MIR -76 186 152 22 0 0 0 chr9 84182164 84182186 -33680441 + AT_rich Low_complexity Low_complexity 1 22 0 1123 141 12 0 chr9 84182286 84182485 -33680142 + AluSq SINE Alu 113 313 0 1887 97 9 61 chr9 84182485 84182534 -33680093 + L1MB3 LINE L1 5872 5922 -261 1978 145 0 13 chr9 84182534 84182844 -33679783 - AluSx SINE Alu -1 311 6 1887 97 9 61 chr9 84182844 84183123 -33679504 + L1MB3 LINE L1 5922 6183 0 1026 240 28 23 chr9 84183288 84183495 -33679132 + MER58A DNA MER1_type 1 211 -2209 2403 109 0 0 chr9 84183495 84183807 -33678820 + AluSx SINE Alu 1 312 0 2356 100 0 3 chr9 84183816 84184116 -33678511 + AluSx SINE Alu 1 299 -13 1957 137 23 10 chr9 84184530 84184830 -33677797 - AluSx SINE Alu -8 304 1 281 243 58 10 chr9 84184838 84184941 -33677686 + L1ME4a LINE L1 6008 6115 -6 2058 127 0 3 chr9 84185276 84185575 -33677052 - AluSq SINE Alu -15 298 1 574 160 96 24 chr9 84185909 84186034 -33676593 - MER4A LTR ERV1 -491 173 40 2378 85 0 0 chr9 84186329 84186622 -33676005 + AluY SINE Alu 1 293 -18 217 244 0 0 chr9 84186893 84186938 -33675689 + CT-rich Low_complexity Low_complexity 2 46 0 2045 121 3 0 chr9 84187031 84187343 -33675284 - AluSg SINE Alu 0 313 1 352 310 16 8 chr9 84187383 84187512 -33675115 - HERV16 LTR ERVL -3956 1040 911 623 313 73 61 chr9 84187782 84188069 -33674558 - HERV16 LTR ERVL -4385 611 329 2313 100 0 0 chr9 84188069 84188359 -33674268 + AluSx SINE Alu 7 296 -16 623 313 73 61 chr9 84188359 84188675 -33673952 - HERV16 LTR ERVL -4667 329 1 3215 95 14 48 chr9 84188680 84188874 -33673753 + LTR8A LTR ERV1 1 200 -527 2241 99 3 3 chr9 84188874 84189168 -33673459 - AluSg SINE Alu -16 294 1 3215 95 14 48 chr9 84189168 84189635 -33672992 + LTR8A LTR ERV1 200 727 0 676 226 84 21 chr9 84190065 84190255 -33672372 - MER58C DNA MER1_type -5 210 9 251 262 105 64 chr9 84190280 84190452 -33672175 + L2 LINE L2 3031 3209 -104 2173 103 7 13 chr9 84190466 84190767 -33671860 - AluSx SINE Alu -12 300 2 3633 152 59 8 chr9 84190768 84191381 -33671246 - MER4D LTR ERV1 -259 644 1 2023 172 58 103 chr9 84191385 84191797 -33670830 - MER4A LTR ERV1 0 664 295 1973 142 0 0 chr9 84191797 84192079 -33670548 - AluSx SINE Alu -10 302 21 2023 172 58 103 chr9 84192079 84192362 -33670265 - MER4A LTR ERV1 -369 295 1 1257 117 14 45 chr9 84192362 84192655 -33669972 - LTR8A LTR ERV1 -86 641 262 1754 120 127 13 chr9 84192655 84192971 -33669656 + MER4B LTR ERV1 1 352 -258 17741 44 4 1 chr9 84192984 84195923 -33666704 - L1PA6 LINE L1 0 6154 3205 1559 111 0 5 chr9 84195927 84196134 -33666493 + AluSc SINE Alu 83 288 -21 579 174 0 0 chr9 84196134 84196249 -33666378 + (TA)n Simple_repeat Simple_repeat 1 115 0 186 200 86 0 chr9 84196692 84196727 -33665900 + MIR SINE MIR 37 74 -188 1064 254 71 64 chr9 84197085 84197604 -33665023 + MLT1G LTR MaLR 68 590 0 933 297 84 40 chr9 84198025 84198524 -33664103 - LTR33 LTR ERVL 0 521 1 2311 109 0 0 chr9 84198858 84199161 -33663466 + AluSq SINE Alu 3 305 -8 191 333 62 0 chr9 84200473 84200554 -33662073 - L2 LINE L2 -487 2827 2742 2294 100 0 13 chr9 84200556 84200867 -33661760 - AluSx SINE Alu -5 307 1 1088 179 25 112 chr9 84201243 84201313 -33661314 - L1MEc LINE L1 -3983 2413 2338 1740 153 3 43 chr9 84201313 84201614 -33661013 + AluJb SINE Alu 1 289 -23 1088 179 25 112 chr9 84201614 84201945 -33660682 - L1MEc LINE L1 -4058 2338 2047 268 258 93 21 chr9 84202655 84202752 -33659875 + MIR SINE MIR 49 140 -68 2226 97 0 48 chr9 84202897 84203206 -33659421 - AluSx SINE Alu -18 294 1 438 229 38 0 chr9 84203298 84203403 -33659224 + MIR SINE MIR 8 116 -146 211 280 65 21 chr9 84203482 84203575 -33659052 + MIR SINE MIR 42 138 -70 2259 107 3 0 chr9 84203648 84203947 -33658680 + AluSg SINE Alu 1 300 -10 23 0 0 0 chr9 84204244 84204267 -33658360 + AT_rich Low_complexity Low_complexity 1 23 0 259 309 93 73 chr9 84204375 84204634 -33657993 + L2 LINE L2 2915 3178 -94 2334 89 10 10 chr9 84204668 84204971 -33657656 - AluSp SINE Alu -10 303 1 315 0 0 0 chr9 84205127 84205162 -33657465 + (CA)n Simple_repeat Simple_repeat 2 36 0 814 119 0 8 chr9 84205211 84205337 -33657290 + 7SK RNA RNA 1 125 -68 468 119 0 0 chr9 84205373 84205440 -33657187 + 7SK RNA RNA 121 187 -6 2180 125 0 3 chr9 84205809 84206106 -33656521 + AluSx SINE Alu 1 296 -16 392 259 27 9 chr9 84206132 84206244 -33656383 + MIR3 SINE MIR 72 185 -23 361 250 57 24 chr9 84206400 84206524 -33656103 + MIR SINE MIR 12 139 -123 200 307 40 0 chr9 84207178 84207279 -33655348 + MIR SINE MIR 158 262 0 244 170 209 92 chr9 84207358 84207392 -33655235 - Charlie7 DNA MER1_type -5 2607 2578 2209 100 3 0 chr9 84207392 84207682 -33654945 - AluSc SINE Alu -18 291 1 244 170 209 92 chr9 84207682 84207930 -33654697 - Charlie7 DNA MER1_type -34 2578 2292 283 56 0 0 chr9 84207930 84207966 -33654661 + AluSg/x SINE Alu 209 244 -58 1381 128 31 0 chr9 84208098 84208322 -33654305 + AluSq SINE Alu 85 314 0 247 196 62 52 chr9 84208329 84208426 -33654201 - L1ME LINE L1 -279 5887 5790 987 207 149 30 chr9 84208439 84208802 -33653825 - L1ME LINE L1 -1437 4709 4304 547 220 55 168 chr9 84208815 84208939 -33653688 + MLT1H LTR MaLR 227 363 -186 4050 97 34 11 chr9 84208939 84209506 -33653121 + LTR19B LTR ERV1 1 580 0 547 220 55 168 chr9 84209506 84209678 -33652949 + MLT1H LTR MaLR 363 477 -72 2345 114 0 0 chr9 84209678 84209986 -33652641 - AluSx SINE Alu -4 308 1 547 220 55 168 chr9 84209986 84210052 -33652575 + MLT1H LTR MaLR 477 549 0 338 245 224 14 chr9 84210703 84210850 -33651777 + MIR SINE MIR 59 236 -26 527 277 79 17 chr9 84210865 84211042 -33651585 - MIR3 SINE MIR -1 207 20 284 290 97 24 chr9 84211113 84211237 -33651390 - MIR SINE MIR -36 226 94 2316 109 0 0 chr9 84211237 84211540 -33651087 + AluSq SINE Alu 1 303 -10 22 0 0 0 chr9 84212509 84212531 -33650096 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr9 84212626 84212650 -33649977 + AT_rich Low_complexity Low_complexity 1 24 0 2260 104 43 56 chr9 84212772 84212793 -33649834 + L1PB4 LINE L1 5763 5783 -373 224 91 23 0 chr9 84212793 84212837 -33649790 + (TG)n Simple_repeat Simple_repeat 2 46 0 2260 104 43 56 chr9 84212837 84213209 -33649418 + L1PB4 LINE L1 5783 6151 -5 2027 123 3 7 chr9 84214096 84214404 -33648223 + AluSx SINE Alu 1 307 -5 2120 106 0 32 chr9 84215246 84215557 -33647070 - AluSx SINE Alu -11 301 1 374 291 34 34 chr9 84215820 84215968 -33646659 - MIR SINE MIR -58 204 57 236 316 0 13 chr9 84216293 84216372 -33646255 + L2 LINE L2 3231 3308 -5 807 120 60 0 chr9 84217427 84217560 -33645067 - AluSg/x SINE Alu -12 297 157 1916 84 87 14 chr9 84217574 84217860 -33644767 - AluSq SINE Alu -6 307 1 196 301 103 55 chr9 84217886 84218032 -33644595 + L2 LINE L2 2939 3091 -181 332 152 15 0 chr9 84218049 84218115 -33644512 + CT-rich Low_complexity Low_complexity 4 70 0 674 203 0 31 chr9 84218116 84218244 -33644383 - FLAM_A SINE Alu -9 124 1 2293 87 0 0 chr9 84218262 84218560 -33644067 - AluSx SINE Alu -14 298 1 397 298 53 23 chr9 84218595 84218726 -33643901 + L2 LINE L2 3136 3270 -2 971 220 110 64 chr9 84218740 84219045 -33643582 + MLT1B LTR MaLR 1 328 -62 2373 73 0 0 chr9 84219045 84219347 -33643280 - AluY SINE Alu -9 302 1 971 220 110 64 chr9 84219347 84219414 -33643213 + MLT1B LTR MaLR 328 390 0 21 0 0 0 chr9 84219606 84219627 -33643000 + AT_rich Low_complexity Low_complexity 1 21 0 1948 117 0 3 chr9 84219892 84220223 -33642404 - AluSx SINE Alu 0 330 1 525 174 14 14 chr9 84221396 84221534 -33641093 + CT-rich Low_complexity Low_complexity 3 140 0 270 0 0 0 chr9 84221539 84221569 -33641058 + (CAGC)n Simple_repeat Simple_repeat 1 30 0 923 46 0 8 chr9 84221855 84221985 -33640642 + (TCTA)n Simple_repeat Simple_repeat 2 130 0 908 247 31 15 chr9 84223021 84223280 -33639347 - L1ME1 LINE L1 -2 6164 5902 2034 123 0 13 chr9 84224000 84224302 -33638325 + AluSq SINE Alu 1 298 -15 22 35 0 0 chr9 84224901 84224930 -33637697 + AT_rich Low_complexity Low_complexity 1 29 0 226 36 0 0 chr9 84225057 84225085 -33637542 - AluY SINE Alu -274 28 1 219 315 41 0 chr9 84225107 84225180 -33637447 + L3 LINE CR1 1500 1575 -2 189 239 196 0 chr9 84225233 84225279 -33637348 + MIR SINE MIR 94 148 -60 2102 111 13 7 chr9 84225831 84226137 -33636490 + AluSx SINE Alu 1 308 -4 1620 147 42 14 chr9 84226678 84226828 -33635799 - AluJb SINE Alu -18 294 150 441 0 0 0 chr9 84226828 84226877 -33635750 + (TA)n Simple_repeat Simple_repeat 2 50 0 1620 147 42 14 chr9 84226877 84227012 -33635615 - AluJb SINE Alu -162 150 1 594 241 9 0 chr9 84227138 84227250 -33635377 - MER81 DNA DNA -1 113 1 362 267 193 7 chr9 84227401 84227536 -33635091 + MER5A DNA MER1_type 9 168 -21 411 289 59 0 chr9 84228221 84228356 -33634271 + MIR SINE MIR 100 242 -20 2220 184 52 64 chr9 84228440 84228984 -33633643 + MLT1F LTR MaLR 1 537 -5 932 134 76 0 chr9 84229133 84229290 -33633337 + AluSg/x SINE Alu 135 303 -7 24 0 0 0 chr9 84229609 84229633 -33632994 + AT_rich Low_complexity Low_complexity 1 24 0 3294 116 31 54 chr9 84230828 84230858 -33631769 + L1MB3 LINE L1 5586 5615 -568 2041 169 9 20 chr9 84230858 84231208 -33631419 + MER7A DNA MER2_type 3 346 0 3294 116 31 54 chr9 84231208 84231429 -33631198 + L1MB3 LINE L1 5615 5840 -343 2139 120 0 0 chr9 84231429 84231728 -33630899 - AluSx SINE Alu -13 299 1 3294 116 31 54 chr9 84231728 84232085 -33630542 + L1MB3 LINE L1 5840 6181 -2 384 231 0 22 chr9 84232092 84232183 -33630444 - MIR SINE MIR -6 256 168 228 314 0 0 chr9 84232614 84232684 -33629943 - MLT2E LTR ERVL -6 622 553 1898 141 0 0 chr9 84232783 84233073 -33629554 - AluSq SINE Alu -23 290 1 239 304 120 24 chr9 84233195 84233320 -33629307 + L2 LINE L2 3100 3236 -36 954 191 5 0 chr9 84233925 84234114 -33628513 + AluJo SINE Alu 121 310 -2 587 296 34 29 chr9 84234588 84234794 -33627833 - MIR SINE MIR -54 208 2 346 58 0 0 chr9 84235154 84235206 -33627421 - AluSp/q SINE Alu -1 302 251 1799 138 29 10 chr9 84235207 84235519 -33627108 + L1MB7 LINE L1 5865 6182 -2 1020 282 47 3 chr9 84235541 84235881 -33626746 - LTR16A LTR ERVL -78 372 18 1052 173 0 0 chr9 84236076 84236255 -33626372 - AluSg/x SINE Alu 0 310 132 2181 116 3 0 chr9 84236255 84236565 -33626062 - AluSx SINE Alu -1 311 1 627 237 0 0 chr9 84236678 84236796 -33625831 + FLAM_A SINE Alu 4 121 -12 38 0 0 0 chr9 84236796 84236834 -33625793 + AT_rich Low_complexity Low_complexity 1 38 0 300 333 90 32 chr9 84237165 84237321 -33625306 - MIR SINE MIR -50 212 48 2080 110 7 0 chr9 84237331 84237622 -33625005 - AluSx SINE Alu -19 293 1 239 226 48 0 chr9 84238214 84238276 -33624351 + MER103 DNA DNA 13 77 -89 493 303 46 0 chr9 84238382 84238534 -33624093 - MER117 DNA MER1_type 0 197 39 229 273 0 0 chr9 84238699 84238743 -33623884 + L2 LINE L2 3193 3236 -36 2090 128 0 6 chr9 84238841 84239154 -33623473 - AluSx SINE Alu -1 311 1 552 296 39 34 chr9 84239273 84239397 -33623230 + MIR SINE MIR 47 174 -88 1927 149 63 14 chr9 84239397 84239745 -33622882 + MLT1A1 LTR MaLR 1 365 0 552 296 39 34 chr9 84239745 84239799 -33622828 + MIR SINE MIR 174 226 -36 2399 66 0 3 chr9 84239944 84240245 -33622382 + AluY SINE Alu 1 300 -11 592 234 16 0 chr9 84240631 84240755 -33621872 - MIR SINE MIR -125 137 12 357 281 82 12 chr9 84240773 84240944 -33621683 + L1MC4a LINE L1 5877 6059 -1749 325 263 125 0 chr9 84240946 84241026 -33621601 + L1MC4 LINE L1 6614 6703 -1339 200 235 0 39 chr9 84241121 84241172 -33621455 + L2 LINE L2 3038 3086 -186 1703 144 0 7 chr9 84241192 84241462 -33621165 - AluSx SINE Alu -44 268 1 313 299 56 9 chr9 84241773 84241880 -33620747 + L2 LINE L2 3143 3254 -18 479 174 56 146 chr9 84242543 84242685 -33619942 + L1MC5 LINE L1 7646 7799 -162 1432 174 52 4 chr9 84242685 84242955 -33619672 + AluJb SINE Alu 3 285 -27 479 174 56 146 chr9 84242955 84242966 -33619661 + L1MC5 LINE L1 7799 7809 -152 183 42 0 0 chr9 84242966 84242990 -33619637 + (CAT)n Simple_repeat Simple_repeat 2 25 0 479 174 56 146 chr9 84242990 84243157 -33619470 + L1MC5 LINE L1 7809 7938 -23 2428 80 0 0 chr9 84243159 84243470 -33619157 + AluSx SINE Alu 2 312 0 332 192 58 10 chr9 84243619 84243723 -33618904 + L1ME4a LINE L1 6010 6118 -3 301 167 61 15 chr9 84243733 84243799 -33618828 - L1MC4 LINE L1 -968 7074 7006 2143 118 0 3 chr9 84244591 84244904 -33617723 - AluSx SINE Alu 0 312 1 2012 115 0 3 chr9 84245207 84245544 -33617083 - AluSq SINE Alu 0 349 14 332 128 0 0 chr9 84245545 84245592 -33617035 - Alu SINE Alu -254 47 1 1088 172 6 6 chr9 84245945 84246125 -33616502 + MER58A DNA MER1_type 45 224 0 213 121 0 0 chr9 84246276 84246309 -33616318 + (A)n Simple_repeat Simple_repeat 1 33 0 559 264 31 57 chr9 84246310 84246358 -33616269 + MER63A DNA MER1_type 46 94 -1594 845 170 71 94 chr9 84246358 84246403 -33616224 - MER20 DNA MER1_type 0 219 175 1986 125 0 0 chr9 84246403 84246690 -33615937 - AluSc SINE Alu -22 287 1 845 170 71 94 chr9 84246690 84246868 -33615759 - MER20 DNA MER1_type -44 175 1 559 264 31 57 chr9 84246868 84246978 -33615649 + MER63A DNA MER1_type 94 200 -10 357 24 0 0 chr9 84247833 84247875 -33614752 + (CA)n Simple_repeat Simple_repeat 1 42 0 908 133 27 0 chr9 84248220 84248396 -33614231 + AluSq SINE Alu 130 309 0 2121 106 3 19 chr9 84248443 84248754 -33613873 + AluSg SINE Alu 1 306 -4 660 307 40 11 chr9 84248827 84249104 -33613523 + L1ME LINE L1 5386 5670 -451 2526 35 3 3 chr9 84249848 84250158 -33612469 - AluY SINE Alu -1 310 1 2237 89 0 3 chr9 84250484 84250777 -33611850 - AluSc SINE Alu -16 293 2 557 263 9 110 chr9 84250827 84251055 -33611572 - MIR SINE MIR -8 254 50 393 333 0 54 chr9 84251051 84251198 -33611429 - L2 LINE L2 0 3272 3134 * 566 236 90 100 chr9 84251432 84251614 -33611013 + L2 LINE L2 3002 3181 -132 1905 120 53 0 chr9 84251614 84251898 -33610729 - AluSx SINE Alu -13 299 1 566 236 90 100 chr9 84251898 84252025 -33610602 + L2 LINE L2 3181 3308 -5 868 229 0 27 chr9 84252564 84252752 -33609875 - MER63A DNA MER1_type -27 183 1 220 305 130 30 chr9 84253008 84253118 -33609509 - L2 LINE L2 0 3313 3187 723 232 0 93 chr9 84253118 84253355 -33609272 + MER58C DNA MER1_type 1 215 0 220 305 130 30 chr9 84253355 84253375 -33609252 - L2 LINE L2 -126 3187 3170 2147 85 30 7 chr9 84253423 84253718 -33608909 + AluSq SINE Alu 1 302 -11 1985 108 0 0 chr9 84253793 84254062 -33608565 + AluSq SINE Alu 1 269 -44 1012 280 4 0 chr9 84254272 84254529 -33608098 - MIR SINE MIR -3 259 2 277 218 90 0 chr9 84254789 84254867 -33607760 - L2 LINE L2 -13 3259 3175 1835 115 29 4 chr9 84255454 84255733 -33606894 - AluSx SINE Alu -19 293 8 2057 123 3 0 chr9 84256348 84256648 -33605979 - AluSp SINE Alu -12 301 1 307 342 62 47 chr9 84256692 84256967 -33605660 + MLT1K LTR MaLR 201 479 -109 4304 83 4 2 chr9 84257487 84258040 -33604587 + MER41A LTR ERV1 1 554 0 200 349 48 48 chr9 84258202 84258391 -33604236 - L2 LINE L2 -280 2992 2804 2029 84 18 0 chr9 84258557 84258841 -33603786 + AluY SINE Alu 18 306 -5 1090 108 32 0 chr9 84258978 84259136 -33603491 - AluSc SINE Alu -12 297 135 627 225 0 0 chr9 84259230 84259341 -33603286 + FLAM_C SINE Alu 1 111 -32 1572 117 4 17 chr9 84259345 84259585 -33603042 - AluSx SINE Alu -45 267 31 1625 166 57 10 chr9 84259585 84259886 -33602741 - MER51B LTR ERV1 0 377 63 594 135 86 98 chr9 84259878 84260041 -33602586 - MER51B LTR ERV1 -215 162 2 * 242 129 210 81 chr9 84260041 84260090 -33602537 - AluSp SINE Alu -120 183 127 965 168 0 12 chr9 84260091 84260252 -33602375 + AluJb SINE Alu 132 290 -22 1973 128 26 7 chr9 84261547 84261853 -33600774 + AluSx SINE Alu 1 312 0 304 235 47 35 chr9 84261901 84261986 -33600641 + MIR SINE MIR 11 96 -166 605 249 116 0 chr9 84261989 84262178 -33600449 + LTR33 LTR ERVL 10 220 -301 602 240 25 61 chr9 84262299 84262495 -33600132 + MLT1H LTR MaLR 23 211 -338 198 0 0 0 chr9 84262525 84262547 -33600080 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 249 284 71 39 chr9 84262779 84262934 -33599693 + LTR33 LTR ERVL 358 517 -4 386 258 40 15 chr9 84263132 84263274 -33599353 - L1MC5 LINE L1 0 8042 7793 2345 106 0 6 chr9 84264071 84264383 -33598244 - AluSg SINE Alu 0 310 1 1920 118 0 0 chr9 84264782 84265037 -33597590 - AluSx SINE Alu -57 255 1 452 277 71 67 chr9 84265248 84265515 -33597112 - MLT1K LTR MaLR -1 587 320 299 300 140 0 chr9 84265565 84265665 -33596962 - L2 LINE L2 -558 2756 2643 2123 115 10 7 chr9 84266077 84266373 -33596254 - AluSg SINE Alu -13 297 1 243 282 12 12 chr9 84266474 84266559 -33596068 - L1ME4a LINE L1 -95 6026 5942 1329 200 123 0 chr9 84266749 84267049 -33595578 + MER46C DNA MER2_type 1 337 -1 707 281 57 24 chr9 84267127 84267373 -33595254 - MIR SINE MIR -3 259 6 2144 128 0 0 chr9 84267472 84267762 -33594865 + AluSx SINE Alu 1 290 -22 2082 100 33 0 chr9 84267770 84268072 -33594555 + AluSg1 SINE Alu 1 311 0 26 74 0 0 chr9 84268432 84268486 -33594141 + AT_rich Low_complexity Low_complexity 1 54 0 305 256 31 78 chr9 84268486 84268615 -33594012 - MLT1K LTR MaLR -341 247 125 1433 107 0 126 chr9 84268959 84269221 -33593406 + AluSx SINE Alu 1 229 -83 1296 239 51 77 chr9 84270150 84270196 -33592431 - MLT2B1 LTR ERVL 0 554 508 2645 112 30 3 chr9 84270196 84270561 -33592066 - THE1C LTR MaLR 0 375 1 1296 239 51 77 chr9 84270561 84270994 -33591633 - MLT2B1 LTR ERVL -46 508 118 1638 181 4 4 chr9 84270994 84271265 -33591362 - AluJo SINE Alu -16 296 26 1296 239 51 77 chr9 84271265 84271380 -33591247 - MLT2B1 LTR ERVL -436 118 1 452 253 187 13 chr9 84271494 84271657 -33590970 - MIR SINE MIR -56 206 17 203 231 204 56 chr9 84272081 84272189 -33590438 - L2 LINE L2 -12 3260 3137 786 147 16 16 chr9 84272297 84272426 -33590201 + AluSg1 SINE Alu 3 131 -178 686 252 88 29 chr9 84272552 84272790 -33589837 + MIR SINE MIR 11 262 0 348 269 8 25 chr9 84273253 84273270 -33589357 + CT-rich Low_complexity Low_complexity 4 20 -100 2185 123 3 0 chr9 84273270 84273572 -33589055 - AluSx SINE Alu -9 303 1 348 269 8 25 chr9 84273572 84273673 -33588954 + CT-rich Low_complexity Low_complexity 20 120 0 190 328 0 31 chr9 84273780 84273844 -33588783 + MIR SINE MIR 38 99 -109 1823 118 89 0 chr9 84273886 84274157 -33588470 + AluSq SINE Alu 1 295 -18 185 250 59 0 chr9 84274181 84274249 -33588378 - MIR SINE MIR -46 216 145 1092 285 30 38 chr9 84274278 84274539 -33588088 + MLT1I LTR MaLR 18 276 -133 2443 96 0 0 chr9 84274539 84274842 -33587785 + AluSq SINE Alu 1 303 -10 1092 285 30 38 chr9 84274842 84274973 -33587654 + MLT1I LTR MaLR 276 407 -2 241 173 13 7 chr9 84274974 84275064 -33587563 - MIR SINE MIR -115 147 6 231 36 0 0 chr9 84275186 84275214 -33587413 + (T)n Simple_repeat Simple_repeat 1 28 0 353 289 58 3 chr9 84275463 84275557 -33587070 - MIR SINE MIR -63 145 79 2160 135 0 0 chr9 84275557 84275861 -33586766 + AluSq SINE Alu 1 304 -9 353 289 58 3 chr9 84275861 84275909 -33586718 - MIR SINE MIR -129 79 35 244 297 40 20 chr9 84276840 84276941 -33585686 - L2 LINE L2 -2 3270 3168 2073 119 0 7 chr9 84277128 84277406 -33585221 + AluSx SINE Alu 9 284 -28 1034 190 13 106 chr9 84277792 84278123 -33584504 - AluJo SINE Alu 0 302 1 791 214 33 97 chr9 84278130 84278461 -33584166 + LTR37B LTR ERV1 53 362 -106 * 2163 200 5 30 chr9 84278442 84278847 -33583780 + MLT2D LTR ERVL 20 414 0 462 200 0 17 chr9 84278849 84278964 -33583663 + LTR37A LTR ERV1 314 426 0 626 88 82 113 chr9 84279183 84279247 -33583380 + L1MC3 LINE L1 6944 7008 -777 2135 125 3 0 chr9 84279247 84279542 -33583085 + AluSx SINE Alu 1 296 -16 626 88 82 113 chr9 84279542 84279636 -33582991 + L1MC3 LINE L1 7008 7097 -688 262 344 0 0 chr9 84279636 84279726 -33582901 + MLT1F1 LTR MaLR 35 124 -443 437 168 129 20 chr9 84279726 84279827 -33582800 + L1MC3 LINE L1 7189 7300 -485 19434 161 53 10 chr9 84279963 84280511 -33582116 - L1P4 LINE L1 -492 7120 6597 2033 162 0 0 chr9 84280511 84280819 -33581808 + AluSx SINE Alu 1 308 -4 19434 161 53 10 chr9 84280819 84283886 -33578741 - L1P4 LINE L1 -1015 6597 3663 2113 100 7 0 chr9 84283886 84284191 -33578436 - AluSp SINE Alu 0 307 1 19434 161 53 10 chr9 84284191 84284391 -33578236 - L1P4 LINE L1 -3949 3663 3473 2198 108 0 7 chr9 84284391 84284686 -33577941 - AluSq SINE Alu -20 293 1 19434 161 53 10 chr9 84284686 84285252 -33577375 - L1P4 LINE L1 -4139 3473 2933 2259 70 35 3 chr9 84285252 84285539 -33577088 - AluY SINE Alu -15 296 1 19434 161 53 10 chr9 84285539 84287944 -33574683 - L1P4 LINE L1 -4679 2933 1 2389 53 3 0 chr9 84287996 84288281 -33574346 + AluY SINE Alu 1 286 -25 345 299 160 70 chr9 84288381 84288850 -33573777 + L2 LINE L2 2243 2753 -561 284 326 153 8 chr9 84288998 84289234 -33573393 - L2 LINE L2 -199 3073 2804 252 0 0 0 chr9 84289296 84289324 -33573303 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 2680 172 8 29 chr9 84289352 84289863 -33572764 + MER41B LTR ERV1 134 466 -12 708 200 31 6 chr9 84289872 84290032 -33572595 - L1M4c LINE L1 -4761 2198 2035 601 84 12 12 chr9 84290039 84290122 -33572505 - FLAM SINE Alu -17 126 44 448 234 16 31 chr9 84290131 84290259 -33572368 - L1M4c LINE L1 -4892 2067 1942 8422 202 37 25 chr9 84290267 84292051 -33570576 - L1M4c LINE L1 -5052 1803 2 292 387 35 7 chr9 84292080 84292222 -33570405 - L2 LINE L2 -614 2700 2555 288 260 164 0 chr9 84292235 84292308 -33570319 + L2 LINE L2 3229 3313 0 308 247 35 24 chr9 84292681 84292766 -33569861 + MIR3 SINE MIR 119 204 -4 2183 103 21 3 chr9 84292971 84293262 -33569365 - AluSg SINE Alu -14 296 1 442 266 69 112 chr9 84293979 84294293 -33568334 + L1MEd LINE L1 562 839 -5280 411 38 0 0 chr9 84294293 84294346 -33568281 + (TG)n Simple_repeat Simple_repeat 2 54 0 442 266 69 112 chr9 84294346 84294641 -33567986 + L1MEd LINE L1 839 1145 -4974 278 236 28 88 chr9 84294674 84294890 -33567737 - L1MC5 LINE L1 -30 7931 7729 429 247 51 25 chr9 84294899 84295057 -33567570 + L1MEd LINE L1 1218 1379 -4931 273 269 0 0 chr9 84295058 84295110 -33567517 - MIR SINE MIR -151 111 60 302 297 59 0 chr9 84295400 84295501 -33567126 - MIR3 SINE MIR -23 185 79 2308 90 0 10 chr9 84296095 84296428 -33566199 + AluSq SINE Alu 1 330 0 473 300 62 0 chr9 84296554 84296714 -33565913 - L1ME LINE L1 -413 5708 5539 805 254 15 34 chr9 84296734 84297002 -33565625 + L1ME4a LINE L1 5747 6009 -112 447 266 62 70 chr9 84297027 84297181 -33565446 + MIR SINE MIR 6 159 -103 2382 83 3 0 chr9 84297181 84297482 -33565145 + AluSp SINE Alu 1 302 -11 447 266 62 70 chr9 84297482 84297586 -33565041 + MIR SINE MIR 159 262 0 1840 139 3 23 chr9 84297645 84297947 -33564680 - AluSx SINE Alu -16 296 1 2102 105 49 0 chr9 84298045 84298331 -33564296 - AluSx SINE Alu -12 300 1 243 88 0 0 chr9 84298397 84298431 -33564196 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 605 218 75 0 chr9 84298527 84298674 -33563953 + MER97a DNA MER1_type? 1 158 -736 236 237 0 0 chr9 84298675 84298713 -33563914 + AluJ/monomer SINE Alu 1 38 -263 * 241 235 0 0 chr9 84298702 84298770 -33563857 + Alu SINE Alu 233 300 0 257 181 181 24 chr9 84298770 84298853 -33563774 + MER97c DNA MER1_type? 150 245 -845 187 146 36 0 chr9 84298863 84298918 -33563709 + (TA)n Simple_repeat Simple_repeat 1 57 0 1822 222 99 6 chr9 84298923 84299427 -33563200 + MER97a DNA MER1_type? 243 793 -101 220 342 67 8 chr9 84299517 84299637 -33562990 - MIR SINE MIR -121 141 15 225 0 0 0 chr9 84299876 84299901 -33562726 + (A)n Simple_repeat Simple_repeat 1 25 0 24 53 0 0 chr9 84299948 84299986 -33562641 + AT_rich Low_complexity Low_complexity 1 38 0 376 273 154 57 chr9 84300451 84300559 -33562068 - MIR SINE MIR -9 253 157 1932 150 14 0 chr9 84300559 84300852 -33561775 - AluJo SINE Alu -14 298 2 376 273 154 57 chr9 84300852 84300970 -33561657 - MIR SINE MIR -105 157 5 280 346 0 0 chr9 84301037 84301115 -33561512 + MIR SINE MIR 25 102 -160 533 268 65 90 chr9 84301164 84301359 -33561268 + MLT1J1 LTR MaLR 66 206 -203 2241 98 0 3 chr9 84301359 84301654 -33560973 + AluSx SINE Alu 1 294 -18 533 268 65 90 chr9 84301654 84301848 -33560779 + MLT1J1 LTR MaLR 206 403 -6 1989 121 0 32 chr9 84302238 84302520 -33560107 + AluSx SINE Alu 1 273 -39 261 304 35 9 chr9 84303508 84303623 -33559004 + L2 LINE L2 2627 2744 -570 616 200 170 178 chr9 84303762 84303930 -33558697 + MLT1G1 LTR MaLR 35 203 -392 2037 128 0 7 chr9 84303930 84304219 -33558408 + AluSq SINE Alu 1 287 -26 616 200 170 178 chr9 84304219 84304300 -33558327 + MLT1G1 LTR MaLR 203 283 -312 2088 113 40 0 chr9 84304300 84304600 -33558027 + AluSx SINE Alu 1 312 0 616 200 170 178 chr9 84304600 84304915 -33557712 + MLT1G1 LTR MaLR 283 595 0 40 37 0 0 chr9 84305156 84305210 -33557417 + AT_rich Low_complexity Low_complexity 1 54 0 638 286 151 33 chr9 84305455 84306033 -33556594 - L1ME4a LINE L1 -223 5898 5264 21 36 0 0 chr9 84306204 84306232 -33556395 + AT_rich Low_complexity Low_complexity 1 28 0 1802 167 7 3 chr9 84306232 84306519 -33556108 - AluJb SINE Alu -24 288 1 231 316 25 0 chr9 84306677 84306756 -33555871 - L2 LINE L2 0 3313 3233 26 0 0 0 chr9 84306805 84306831 -33555796 + AT_rich Low_complexity Low_complexity 1 26 0 195 350 93 21 chr9 84306947 84307044 -33555583 + L2 LINE L2 3169 3272 0 264 345 67 0 chr9 84309404 84309523 -33553104 - MIR SINE MIR -71 191 65 254 235 71 51 chr9 84310015 84310113 -33552514 + L2 LINE L2 3173 3272 0 222 254 56 59 chr9 84310216 84310341 -33552286 + MIR SINE MIR 60 179 -29 228 231 0 26 chr9 84310734 84310812 -33551815 + G-rich Low_complexity Low_complexity 6 81 0 312 280 121 108 chr9 84310889 84310954 -33551673 + L1M2 LINE L1 537 600 -6249 189 74 0 0 chr9 84310954 84310981 -33551646 + (CCG)n Simple_repeat Simple_repeat 2 28 0 312 280 121 108 chr9 84310981 84311487 -33551140 + L1M2 LINE L1 600 1115 -5734 2089 124 3 10 chr9 84313511 84313817 -33548810 - AluSq SINE Alu -5 308 5 333 261 34 25 chr9 84313852 84313971 -33548656 + L2 LINE L2 3169 3288 -25 25 0 0 0 chr9 84314775 84314800 -33547827 + AT_rich Low_complexity Low_complexity 1 25 0 2228 101 0 32 chr9 84315749 84316057 -33546570 - AluSq SINE Alu -15 298 1 1990 141 6 29 chr9 84316088 84316400 -33546227 - AluJo SINE Alu -7 305 1 186 298 96 39 chr9 84316821 84316925 -33545702 - MIR SINE MIR -81 127 18 561 186 8 65 chr9 84316969 84317093 -33545534 - MER5B DNA MER1_type -7 171 55 313 138 17 35 chr9 84317118 84317176 -33545451 - MER66B LTR ERV1 -143 343 287 249 259 0 0 chr9 84317176 84317230 -33545397 - MER5B DNA MER1_type -123 55 2 * 987 343 135 25 chr9 84317230 84318153 -33544474 + L2 LINE L2 2161 3213 -100 1661 180 52 12 chr9 84318153 84318480 -33544147 + MER58B DNA MER1_type 2 341 0 987 343 135 25 chr9 84318480 84318593 -33544034 + L2 LINE L2 3213 3312 -1 525 186 21 0 chr9 84319908 84320005 -33542622 - MLT1E3 LTR MaLR 0 624 526 189 94 0 0 chr9 84320333 84320365 -33542262 + (A)n Simple_repeat Simple_repeat 1 32 0 2201 107 7 3 chr9 84320514 84320813 -33541814 - AluSx SINE Alu -12 300 1 190 316 0 18 chr9 84321774 84321831 -33540796 + L2 LINE L2 3209 3264 -8 2534 98 52 6 chr9 84323371 84323718 -33538909 - THE1B LTR MaLR 0 364 2 296 230 53 128 chr9 84323849 84323942 -33538685 + L1ME4a LINE L1 5726 5801 -320 1757 106 12 23 chr9 84323942 84324225 -33538402 - AluSx SINE Alu 0 309 30 296 230 53 128 chr9 84324225 84324317 -33538310 + L1ME4a LINE L1 5801 5898 -223 2316 57 40 7 chr9 84324524 84324823 -33537804 + AluY SINE Alu 1 309 -2 338 293 85 0 chr9 84324898 84325062 -33537565 - MIR SINE MIR -52 210 33 282 125 0 21 chr9 84325063 84325104 -33537523 - MER4D LTR ERV1 0 872 833 380 59 0 0 chr9 84325104 84325155 -33537472 - MADE1 DNA Mariner 0 80 30 * 3006 130 103 10 chr9 84325149 84325671 -33536956 - MER4B LTR ERV1 -39 571 1 2099 122 0 26 chr9 84325800 84326111 -33536516 - AluSq SINE Alu -10 303 1 464 234 46 107 chr9 84326308 84326427 -33536200 - Charlie8 DNA MER1_type -145 185 81 2192 127 0 0 chr9 84326427 84326726 -33535901 - AluSp SINE Alu -14 299 1 464 234 46 107 chr9 84326726 84326803 -33535824 - Charlie8 DNA MER1_type -249 81 1 268 264 28 0 chr9 84327441 84327513 -33535114 - MIR SINE MIR -115 147 74 21 0 0 0 chr9 84327621 84327642 -33534985 + AT_rich Low_complexity Low_complexity 1 21 0 1032 289 67 38 chr9 84327689 84327910 -33534717 + L1MC4 LINE L1 7473 7686 -356 2048 127 0 13 chr9 84327910 84328209 -33534418 + AluSq SINE Alu 1 295 -18 1032 289 67 38 chr9 84328209 84328541 -33534086 + L1MC4 LINE L1 7686 8042 0 601 145 12 0 chr9 84328962 84329045 -33533582 - AluS SINE Alu -227 85 2 2148 104 3 3 chr9 84329087 84329376 -33533251 + AluSp SINE Alu 1 289 -24 1977 152 0 9 chr9 84329967 84330282 -33532345 + AluJb SINE Alu 1 312 0 422 286 0 0 chr9 84330401 84330506 -33532121 - MIR SINE MIR -109 153 49 1801 136 12 78 chr9 84330507 84330838 -33531789 - MLT1B LTR MaLR 0 390 82 1373 162 79 16 chr9 84330849 84331126 -33531501 + AluJo SINE Alu 13 305 0 447 222 0 0 chr9 84331127 84331208 -33531419 - MLT1B LTR MaLR -299 91 11 2307 115 0 3 chr9 84331557 84331870 -33530757 - AluSx SINE Alu 0 312 1 630 262 63 92 chr9 84332227 84332412 -33530215 - MLT1I LTR MaLR -2 407 235 2597 53 0 0 chr9 84332412 84332715 -33529912 + AluY SINE Alu 1 303 -8 630 262 63 92 chr9 84332715 84332876 -33529751 - MLT1I LTR MaLR -174 235 71 2140 117 7 0 chr9 84332921 84333219 -33529408 + AluSx SINE Alu 4 303 -9 295 327 122 55 chr9 84333259 84333858 -33528769 + L2 LINE L2 2035 2673 -641 2282 104 0 0 chr9 84333891 84334188 -33528439 + AluSx SINE Alu 1 297 -15 2138 128 0 0 chr9 84334196 84334493 -33528134 + AluSq SINE Alu 1 297 -16 238 326 166 34 chr9 84334496 84334607 -33528020 - L2 LINE L2 -23 3249 3154 2410 71 0 0 chr9 84334607 84334902 -33527725 + AluY SINE Alu 1 295 -16 238 326 166 34 chr9 84334902 84334965 -33527662 - L2 LINE L2 -118 3154 3052 * 245 329 108 29 chr9 84334952 84335281 -33527346 + L2 LINE L2 2684 3104 -168 263 133 0 17 chr9 84335683 84335743 -33526884 + (TG)n Simple_repeat Simple_repeat 1 59 0 186 71 0 0 chr9 84335742 84335770 -33526857 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 2087 121 39 18 chr9 84336309 84336639 -33525988 - THE1C LTR MaLR 0 375 39 1157 178 5 15 chr9 84336642 84336839 -33525788 + AluSg/x SINE Alu 103 297 -13 2152 123 33 0 chr9 84337026 84337326 -33525301 + AluSx SINE Alu 1 310 -2 23 0 0 0 chr9 84338499 84338522 -33524105 + AT_rich Low_complexity Low_complexity 1 23 0 740 204 27 14 chr9 84338781 84338909 -33523718 + MER3 DNA MER1_type 1 133 -29 2311 108 0 7 chr9 84338909 84339216 -33523411 - AluSx SINE Alu -7 305 1 740 204 27 14 chr9 84339216 84339234 -33523393 + MER3 DNA MER1_type 133 149 -60 1168 100 0 0 chr9 84339236 84339386 -33523241 - AluSg/x SINE Alu -18 294 145 306 192 0 0 chr9 84339389 84339441 -33523186 + MER3 DNA MER1_type 158 209 0 228 284 0 27 chr9 84339441 84339472 -33523155 - MER3 DNA MER1_type -162 47 19 196 401 3 0 chr9 84339530 84339604 -33523023 + MIR SINE MIR 32 107 -101 180 250 67 0 chr9 84340026 84340086 -33522541 - L2 LINE L2 0 3272 3209 225 0 0 0 chr9 84340138 84340163 -33522464 + (A)n Simple_repeat Simple_repeat 1 25 0 236 306 0 42 chr9 84340163 84340235 -33522392 + MIR SINE MIR 19 87 -121 2143 139 0 0 chr9 84340470 84340780 -33521847 - AluSg SINE Alu 0 310 1 2312 105 3 0 chr9 84341184 84341488 -33521139 + AluSp SINE Alu 1 305 -8 346 302 141 10 chr9 84341748 84341940 -33520687 + L1ME4a LINE L1 5619 5835 -286 209 156 0 44 chr9 84342588 84342633 -33519994 + (TCTCTG)n Simple_repeat Simple_repeat 5 47 0 2089 113 0 27 chr9 84342685 84342986 -33519641 - AluSx SINE Alu -19 293 1 314 172 172 11 chr9 84343165 84343213 -33519414 + L2 LINE L2 2766 2805 -509 348 24 0 0 chr9 84343213 84343254 -33519373 + (CA)n Simple_repeat Simple_repeat 1 41 0 314 172 172 11 chr9 84343254 84343292 -33519335 + L2 LINE L2 2805 2866 -448 180 340 0 0 chr9 84343289 84343342 -33519285 + L2 LINE L2 2995 3047 -266 * 2443 203 51 14 chr9 84343472 84343965 -33518662 + MLT1F LTR MaLR 2 512 -30 362 197 45 13 chr9 84344338 84344649 -33517978 + (TATG)n Simple_repeat Simple_repeat 1 321 0 439 180 28 17 chr9 84344649 84344827 -33517800 + (TG)n Simple_repeat Simple_repeat 1 180 0 456 198 162 7 chr9 84344870 84345021 -33517606 + L1MD3 LINE L1 7612 7995 0 328 294 61 43 chr9 84346033 84346196 -33516431 + MIR SINE MIR 8 173 -89 704 339 55 15 chr9 84346305 84346635 -33515992 - LTR16C LTR ERVL -5 486 144 995 170 142 8 chr9 84347617 84347870 -33514757 + L1MC5 LINE L1 7246 7532 -429 2156 102 14 0 chr9 84347871 84348164 -33514463 + AluSg SINE Alu 1 297 -13 1352 177 28 12 chr9 84348299 84348553 -33514074 + AluJb SINE Alu 37 294 -18 239 118 24 129 chr9 84348587 84348672 -33513955 + L1MC5 LINE L1 7609 7684 -277 2870 106 8 8 chr9 84348681 84349076 -33513551 - L1PB3 LINE L1 0 6154 5760 1078 74 198 0 chr9 84349086 84349248 -33513379 - AluSg/x SINE Alu -9 303 110 1452 167 14 29 chr9 84349375 84349650 -33512977 + AluJb SINE Alu 11 281 -31 2225 93 10 3 chr9 84349650 84349940 -33512687 - AluSg SINE Alu -17 293 1 635 287 55 10 chr9 84349984 84350186 -33512441 - MLT1L LTR MaLR -34 581 371 245 269 137 91 chr9 84350261 84350458 -33512169 - MLT1L LTR MaLR -407 208 3 26 30 0 0 chr9 84351013 84351046 -33511581 + AT_rich Low_complexity Low_complexity 1 33 0 434 333 44 0 chr9 84351622 84351781 -33510846 + MIR SINE MIR 1 166 -96 2110 128 7 0 chr9 84351935 84352231 -33510396 - AluJb SINE Alu -14 298 1 506 263 86 24 chr9 84352269 84352478 -33510149 - MLT1J LTR MaLR -1 510 289 1936 118 3 57 chr9 84352485 84352661 -33509966 - AluJo SINE Alu -15 297 113 513 0 0 0 chr9 84352661 84352718 -33509909 + (TTTTA)n Simple_repeat Simple_repeat 4 60 0 2107 108 7 0 chr9 84352719 84353005 -33509622 - AluSx SINE Alu -24 288 1 2281 113 3 0 chr9 84353005 84353315 -33509312 - AluSq SINE Alu -2 311 1 1936 118 3 57 chr9 84353315 84353449 -33509178 - AluJo SINE Alu -197 115 1 622 265 75 6 chr9 84354288 84354507 -33508120 - MIR SINE MIR -15 247 16 1988 116 3 53 chr9 84354602 84354921 -33507706 - AluSq SINE Alu -7 306 4 245 266 83 46 chr9 84356137 84356246 -33506381 - MER103 DNA DNA -45 121 9 190 250 0 0 chr9 84356829 84356873 -33505754 + L2 LINE L2 3266 3309 -4 2275 97 3 16 chr9 84357695 84358003 -33504624 - AluSx SINE Alu -8 304 1 23 33 0 0 chr9 84358820 84358850 -33503777 + AT_rich Low_complexity Low_complexity 1 30 0 502 318 180 16 chr9 84359012 84359389 -33503238 - L3 LINE CR1 -7 1570 1132 1428 241 112 71 chr9 84359427 84359457 -33503170 - HAL1 LINE L1 0 2507 2480 2398 77 3 7 chr9 84359457 84359757 -33502870 - AluSq SINE Alu -14 299 1 1428 241 112 71 chr9 84359757 84360085 -33502542 - HAL1 LINE L1 -27 2480 2167 1751 176 3 10 chr9 84360085 84360387 -33502240 - AluJb SINE Alu -12 300 1 1428 241 112 71 chr9 84360387 84360718 -33501909 - HAL1 LINE L1 -340 2167 1781 2432 84 3 0 chr9 84360718 84361016 -33501611 - AluSp SINE Alu -14 299 1 1428 241 112 71 chr9 84361016 84361075 -33501552 - HAL1 LINE L1 -726 1781 1726 3526 195 70 15 chr9 84361083 84361863 -33500764 - L1ME1 LINE L1 -23 6143 5321 1752 161 3 34 chr9 84361895 84362186 -33500441 - AluJo SINE Alu -30 282 1 2620 214 20 27 chr9 84362268 84362927 -33499700 - L1ME1 LINE L1 -1031 5115 4462 2944 229 154 23 chr9 84362936 84364017 -33498610 - HAL1 LINE L1 -766 1741 520 748 298 121 4 chr9 84364026 84364291 -33498336 - HAL1 LINE L1 -2061 446 151 292 279 44 0 chr9 84364297 84364365 -33498262 - HAL1 LINE L1 -2420 87 17 2181 86 21 3 chr9 84364427 84364718 -33497909 - AluSq SINE Alu -17 296 1 276 278 219 39 chr9 84364776 84365082 -33497545 - L3 LINE CR1 -553 1024 664 418 182 13 0 chr9 84365105 84365182 -33497445 - HAL1 LINE L1 -1740 767 690 23 54 0 0 chr9 84365183 84365220 -33497407 + AT_rich Low_complexity Low_complexity 1 37 0 495 373 86 16 chr9 84365301 84365615 -33497012 - L3 LINE CR1 -1062 515 180 248 299 84 47 chr9 84365984 84366091 -33496536 - L2 LINE L2 -4 3268 3158 321 277 208 15 chr9 84366273 84366533 -33496094 + L2 LINE L2 2652 2961 -353 460 213 234 25 chr9 84366570 84366767 -33495860 + L2 LINE L2 3074 3311 -2 2298 107 0 0 chr9 84367534 84367834 -33494793 - AluSx SINE Alu -12 300 1 319 314 102 0 chr9 84368481 84368599 -33494028 - MIR SINE MIR -86 176 47 201 74 0 0 chr9 84368883 84368910 -33493717 + (TA)n Simple_repeat Simple_repeat 2 28 0 2207 126 0 10 chr9 84368910 84369210 -33493417 - AluSx SINE Alu -13 299 1 214 207 23 103 chr9 84370706 84370793 -33491834 - MIR SINE MIR -124 138 59 242 164 66 16 chr9 84370814 84370875 -33491752 - L1MD3 LINE L1 -288 7707 7644 2276 87 0 3 chr9 84371723 84372021 -33490606 - AluSx SINE Alu -12 300 4 1641 257 161 12 chr9 84372285 84372484 -33490143 - L2 LINE L2 0 3313 3145 456 19 0 0 chr9 84372484 84372537 -33490090 + (TG)n Simple_repeat Simple_repeat 1 53 0 1641 257 161 12 chr9 84372537 84373161 -33489466 - L2 LINE L2 -168 3145 2356 2067 116 7 17 chr9 84373976 84374142 -33488485 - AluSx SINE Alu -14 298 132 213 108 0 0 chr9 84374142 84374179 -33488448 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 2330 64 0 0 chr9 84374179 84374460 -33488167 - AluY SINE Alu -30 281 1 2067 116 7 17 chr9 84374460 84374593 -33488034 - AluSx SINE Alu -178 134 1 228 191 0 0 chr9 84374599 84374641 -33487986 - Tigger6b DNA MER2_type -735 862 821 630 57 68 0 chr9 84375033 84375121 -33487506 + AluY SINE Alu 204 297 -14 475 298 118 33 chr9 84375146 84375231 -33487396 + L1M4 LINE L1 3896 3972 -2174 2381 74 0 3 chr9 84375231 84375529 -33487098 - AluSc SINE Alu -12 297 1 475 298 118 33 chr9 84375529 84376044 -33486583 + L1M4 LINE L1 3972 4594 -1552 318 354 21 13 chr9 84376143 84376300 -33486327 + MIR SINE MIR 2 162 -46 758 269 27 0 chr9 84376648 84376834 -33485793 + MER63A DNA MER1_type 2 192 -18 242 278 0 0 chr9 84378329 84378383 -33484244 - MIR3 SINE MIR -2 206 153 2403 74 3 0 chr9 84378460 84378756 -33483871 - AluSg SINE Alu -12 298 2 199 258 97 32 chr9 84380024 84380086 -33482541 + L2 LINE L2 3188 3253 -19 940 121 8 0 chr9 84380143 84380275 -33482352 - FLAM_C SINE Alu 0 133 1 1909 130 133 13 chr9 84380698 84381082 -33481545 - L1MB8 LINE L1 -5 6173 5744 1062 174 115 66 chr9 84381383 84381792 -33480835 - LTR7 LTR ERV1 0 450 22 1515 163 0 0 chr9 84381792 84382019 -33480608 + AluSx SINE Alu 64 290 -22 773 248 97 17 chr9 84382156 84382394 -33480233 + MIR SINE MIR 1 257 -5 1786 187 10 3 chr9 84382593 84382892 -33479735 + AluJo SINE Alu 3 303 -9 476 159 0 0 chr9 84383112 84383200 -33479427 + L1MA9 LINE L1 6220 6307 -5 1914 176 0 0 chr9 84384246 84384553 -33478074 - AluJb SINE Alu -2 310 4 230 214 18 18 chr9 84384585 84384641 -33477986 - L1MB8 LINE L1 -523 5598 5543 231 162 118 0 chr9 84384818 84384886 -33477741 - MER103 DNA DNA -80 86 11 341 266 105 8 chr9 84385082 84385206 -33477421 - L2 LINE L2 0 3272 3137 2306 105 3 6 chr9 84385710 84386023 -33476604 - AluSq SINE Alu -1 312 1 33 25 0 0 chr9 84386296 84386336 -33476291 + AT_rich Low_complexity Low_complexity 1 40 0 1776 151 58 0 chr9 84388798 84389076 -33473551 + AluJb SINE Alu 1 294 -18 1068 269 73 42 chr9 84390162 84390775 -33471852 - L1MCa LINE L1 -4601 2006 1166 351 0 0 0 chr9 84390775 84390814 -33471813 + (TG)n Simple_repeat Simple_repeat 2 40 0 1068 269 73 42 chr9 84390814 84390985 -33471642 - L1MCa LINE L1 -5441 1166 1002 286 304 78 9 chr9 84391133 84391248 -33471379 + MIR3 SINE MIR 83 205 -3 463 252 113 6 chr9 84391695 84391854 -33470773 + MIR SINE MIR 79 254 -8 412 290 173 2 chr9 84392783 84392941 -33469686 - MIR3 SINE MIR -10 198 3 2294 93 7 0 chr9 84393283 84393585 -33469042 - AluSp SINE Alu -9 304 1 210 37 0 0 chr9 84394235 84394262 -33468365 + (TTG)n Simple_repeat Simple_repeat 2 28 0 2350 73 10 0 chr9 84394264 84394553 -33468074 - AluSq SINE Alu -21 292 1 243 333 143 41 chr9 84394700 84394847 -33467780 - L2 LINE L2 0 3272 3111 288 254 79 40 chr9 84395461 84395587 -33467040 + MIR3 SINE MIR 2 132 -76 658 250 12 29 chr9 84395984 84396156 -33466471 - MIR3 SINE MIR -21 187 19 2158 100 24 0 chr9 84396681 84396972 -33465655 - AluSq SINE Alu -15 298 1 278 322 95 47 chr9 84397512 84397723 -33464904 - MIR SINE MIR -5 257 37 260 307 117 37 chr9 84398203 84398248 -33464379 - MER5B DNA MER1_type -1 177 137 2104 144 7 0 chr9 84398248 84398554 -33464073 - AluSx SINE Alu -4 308 1 260 307 117 37 chr9 84398554 84398671 -33463956 - MER5B DNA MER1_type -41 137 2 365 350 113 18 chr9 84398686 84398969 -33463658 - L2 LINE L2 -561 2753 2444 693 234 86 35 chr9 84399390 84399587 -33463040 - MIR SINE MIR -8 254 48 323 127 0 0 chr9 84400334 84400389 -33462238 - L1MB3 LINE L1 -18 6165 6111 389 310 82 18 chr9 84400514 84400685 -33461942 - MIR3 SINE MIR -6 202 21 350 25 0 0 chr9 84400847 84400887 -33461740 + (T)n Simple_repeat Simple_repeat 1 40 0 196 191 106 0 chr9 84401452 84401499 -33461128 + L2 LINE L2 3261 3312 -1 1481 218 3 7 chr9 84401913 84402207 -33460420 - AluJo SINE Alu -7 305 13 829 211 51 40 chr9 84402454 84402729 -33459898 + L1MB2 LINE L1 4999 5276 -870 3354 149 56 29 chr9 84402730 84403054 -33459573 + L1MB2 LINE L1 5468 5782 -389 1922 150 29 13 chr9 84403054 84403360 -33459267 + AluJb SINE Alu 2 312 0 3354 149 56 29 chr9 84403360 84403719 -33458908 + L1MB2 LINE L1 5782 6169 -2 1991 118 49 9 chr9 84403719 84404065 -33458562 + L1MB3 LINE L1 5814 6176 -7 2417 100 3 0 chr9 84404559 84404868 -33457759 + AluSq SINE Alu 1 310 -3 1326 208 27 0 chr9 84405631 84405891 -33456736 + Tigger7 DNA MER2_type 1 267 -466 517 168 11 11 chr9 84405890 84405985 -33456642 + Tigger7 DNA MER2_type 2490 2584 -3 * 187 296 19 19 chr9 84406240 84406294 -33456333 - L2 LINE L2 -9 3263 3210 805 147 8 16 chr9 84406365 84406494 -33456133 + FLAM_A SINE Alu 2 129 -4 232 149 0 43 chr9 84407360 84407407 -33455220 - L2 LINE L2 0 3313 3269 1113 178 9 32 chr9 84407824 84408043 -33454584 + MER20 DNA MER1_type 1 214 -5 1966 149 4 0 chr9 84408214 84408495 -33454132 - AluJo SINE Alu -30 282 1 216 0 0 0 chr9 84409069 84409093 -33453534 + (T)n Simple_repeat Simple_repeat 1 24 0 708 310 45 16 chr9 84410313 84410555 -33452072 - MIR SINE MIR -2 260 12 2240 120 0 0 chr9 84410587 84410886 -33451741 + AluSx SINE Alu 1 299 -13 499 254 43 49 chr9 84411261 84411446 -33451181 - MIR SINE MIR -59 203 20 666 180 67 7 chr9 84411491 84411641 -33450986 - MIR SINE MIR -1 261 103 412 255 7 18 chr9 84412488 84412606 -33450021 + MIR SINE MIR 35 149 -62 195 42 0 0 chr9 84412674 84412698 -33449929 + (TTA)n Simple_repeat Simple_repeat 3 26 0 214 355 0 0 chr9 84414175 84414237 -33448390 - MIR SINE MIR -80 128 67 289 88 70 0 chr9 84414420 84414477 -33448150 - L1MD3 LINE L1 -13 7982 7922 207 254 90 0 chr9 84415297 84415364 -33447263 + L2 LINE L2 3232 3304 -9 409 347 162 0 chr9 84415422 84415719 -33446908 + L2 LINE L2 2944 3288 -25 622 264 84 15 chr9 84415721 84416029 -33446598 - L1ME LINE L1 -459 5662 5364 1299 221 21 14 chr9 84416528 84416813 -33445814 - MLT1E LTR MaLR 0 593 307 1938 129 0 17 chr9 84416974 84417289 -33445338 - AluSx SINE Alu 0 310 1 220 228 326 0 chr9 84418128 84418220 -33444407 - MIR SINE MIR -64 144 23 186 71 0 0 chr9 84418485 84418513 -33444114 + (T)n Simple_repeat Simple_repeat 1 28 0 268 268 127 86 chr9 84419269 84419489 -33443138 - L2 LINE L2 0 3313 3085 364 206 202 31 chr9 84419594 84419817 -33442810 + L1ME4a LINE L1 5860 6120 -1 257 320 26 0 chr9 84419821 84419899 -33442728 - L2 LINE L2 -78 3194 3115 1175 225 38 101 chr9 84420032 84420474 -33442153 - MLT1E2 LTR MaLR 0 593 220 2157 118 3 3 chr9 84421401 84421705 -33440922 - AluSx SINE Alu -8 304 1 1069 272 132 40 chr9 84422407 84422835 -33439792 - MER77 LTR ERV1 -4 601 154 431 183 214 23 chr9 84422861 84422992 -33439635 - MER77 LTR ERV1 -395 210 55 2073 223 55 52 chr9 84423094 84423772 -33438855 - L1ME1 LINE L1 -4 6162 5483 677 225 46 7 chr9 84423777 84423952 -33438675 - FAM SINE Alu 0 49 1 1609 232 39 7 chr9 84423984 84424590 -33438037 - L1ME1 LINE L1 -680 5482 4855 272 294 40 0 chr9 84425036 84425162 -33437465 + L1MB7 LINE L1 4482 4612 -1534 295 232 119 86 chr9 84425517 84425668 -33436959 - Charlie8 DNA MER1_type -2171 246 91 2067 109 36 10 chr9 84426166 84426468 -33436159 + AluSq SINE Alu 1 310 -3 394 215 96 22 chr9 84426673 84426808 -33435819 + MIR SINE MIR 117 261 -1 1793 51 203 0 chr9 84427218 84427474 -33435153 - AluY SINE Alu -1 310 3 2095 133 0 7 chr9 84427476 84427778 -33434849 - AluSx SINE Alu -12 300 1 3440 187 27 6 chr9 84427911 84428581 -33434046 + L1MB7 LINE L1 5322 6005 -173 2082 153 102 23 chr9 84428589 84428986 -33433641 - MSTC LTR MaLR 0 428 1 646 198 22 16 chr9 84428987 84429169 -33433458 + L1MB7 LINE L1 6002 6184 0 1700 185 0 20 chr9 84429299 84429596 -33433031 - AluJo SINE Alu -21 291 1 529 321 115 44 chr9 84429973 84430469 -33432158 + L2 LINE L2 2167 2697 -617 2235 84 0 4 chr9 84430517 84430791 -33431836 - AluSx SINE Alu -21 291 19 684 325 58 53 chr9 84430847 84431241 -33431386 + L2 LINE L2 2875 3270 -2 1189 276 99 24 chr9 84431329 84431782 -33430845 - L2 LINE L2 -1 3312 2826 582 343 85 39 chr9 84432965 84433329 -33429298 + L2 LINE L2 2891 3271 -1 486 305 134 0 chr9 84434597 84434815 -33427812 + MIR SINE MIR 4 255 -7 2238 112 0 0 chr9 84434930 84435234 -33427393 - AluSx SINE Alu -8 304 1 442 268 115 22 chr9 84435673 84435856 -33426771 - MIR SINE MIR -26 236 37 498 219 10 0 chr9 84436213 84436309 -33426318 + MIR SINE MIR 166 262 0 2194 113 3 10 chr9 84436339 84436640 -33425987 + AluSq SINE Alu 1 299 -14 297 221 0 0 chr9 84436649 84436717 -33425910 + (TGG)n Simple_repeat Simple_repeat 3 70 0 293 250 17 58 chr9 84437771 84437891 -33424736 - L1ME4a LINE L1 -65 6056 5942 394 298 70 38 chr9 84438650 84438808 -33423819 - MER5A DNA MER1_type -25 164 2 363 44 0 0 chr9 84438933 84438978 -33423649 + (TG)n Simple_repeat Simple_repeat 2 46 0 501 253 99 27 chr9 84439624 84439843 -33422784 + MIR SINE MIR 13 248 -14 924 234 39 24 chr9 84440026 84440231 -33422396 + MIR SINE MIR 13 220 -42 224 286 50 64 chr9 84440373 84440513 -33422114 - L2 LINE L2 -251 3062 2925 537 293 54 27 chr9 84443409 84443631 -33418996 + MIR SINE MIR 9 236 -26 23 0 8 0 chr9 84444091 84444152 -33418475 + AT_rich Low_complexity Low_complexity 1 23 0 202 378 95 0 chr9 84445917 84445991 -33416636 - L2 LINE L2 -47 3225 3145 547 264 104 16 chr9 84446120 84446313 -33416314 + MIR SINE MIR 20 229 -33 199 310 46 23 chr9 84446667 84446754 -33415873 - L2 LINE L2 0 3272 3184 2028 143 3 7 chr9 84446775 84447212 -33415415 + AluSx SINE Alu 1 312 0 480 279 114 41 chr9 84447252 84447471 -33415156 - MIR SINE MIR -6 256 22 840 183 0 0 chr9 84447502 84447633 -33414994 + FLAM_C SINE Alu 1 131 -12 258 289 115 0 chr9 84498916 84499020 -33363607 + L1ME4a LINE L1 5695 5810 -311 21 0 0 0 chr9 84499311 84499332 -33363295 + AT_rich Low_complexity Low_complexity 1 21 0 2083 125 17 0 chr9 84500576 84500872 -33361755 - AluSx SINE Alu -11 301 1 1167 119 139 0 chr9 84502876 84503078 -33359549 - MER30 DNA MER1_type 0 230 1 2105 112 3 53 chr9 84503132 84503453 -33359174 + AluSx SINE Alu 1 305 -7 238 216 0 0 chr9 84505532 84505583 -33357044 + L1MC4 LINE L1 6652 6702 -1340 189 0 0 0 chr9 84506822 84506843 -33355784 + (A)n Simple_repeat Simple_repeat 1 21 0 243 0 0 0 chr9 84508795 84508822 -33353805 + (T)n Simple_repeat Simple_repeat 1 27 0 396 40 0 0 chr9 84510804 84510854 -33351773 + (TG)n Simple_repeat Simple_repeat 2 51 0 2318 103 3 0 chr9 84511600 84511910 -33350717 - AluSx SINE Alu -1 311 1 23 33 0 0 chr9 84513700 84513730 -33348897 + AT_rich Low_complexity Low_complexity 1 30 0 2410 64 0 13 chr9 84514054 84514368 -33348259 + AluY SINE Alu 1 310 -1 1555 72 54 22 chr9 84515223 84515446 -33347181 + MER30 DNA MER1_type 1 230 0 2103 119 3 0 chr9 84516305 84516600 -33346027 + AluSp SINE Alu 1 296 -17 2419 86 0 0 chr9 84516600 84516903 -33345724 + AluSc SINE Alu 1 303 -6 307 247 0 32 chr9 84517560 84517653 -33344974 + L1ME4a LINE L1 5985 6074 -47 398 291 256 16 chr9 84518163 84518417 -33344210 - L2 LINE L2 -5 3267 2953 1549 164 0 30 chr9 84519243 84519511 -33343116 - AluJo SINE Alu -52 260 1 360 371 101 22 chr9 84519943 84520527 -33342100 - L2 LINE L2 -60 3212 2554 937 82 8 0 chr9 84520528 84520650 -33341977 + AluSg/x SINE Alu 185 307 -5 337 264 86 46 chr9 84521112 84521286 -33341341 + MIR SINE MIR 1 181 -81 292 260 125 42 chr9 84521308 84521404 -33341223 - L2 LINE L2 0 3313 3210 2208 108 0 3 chr9 84521429 84521726 -33340901 + AluSx SINE Alu 1 296 -16 5785 198 78 62 chr9 84521750 84522850 -33339777 + L1MB5 LINE L1 15 1096 -5548 1843 157 0 14 chr9 84522850 84523144 -33339483 + AluJo SINE Alu 1 290 -22 5785 198 78 62 chr9 84523144 84523968 -33338659 + L1MB5 LINE L1 1096 1905 -4739 2143 118 0 36 chr9 84523968 84524273 -33338354 + AluSx SINE Alu 1 294 -18 2141 101 44 0 chr9 84524276 84524574 -33338053 + AluSx SINE Alu 1 311 -1 5785 198 78 62 chr9 84524574 84524794 -33337833 + L1MB5 LINE L1 1906 2121 -4523 2227 95 3 3 chr9 84524794 84525102 -33337525 - AluSx SINE Alu 0 308 1 5785 198 78 62 chr9 84525102 84525794 -33336833 + L1MB5 LINE L1 2121 2964 -3680 1738 172 0 0 chr9 84525794 84526061 -33336566 + AluJo SINE Alu 1 267 -45 5785 198 78 62 chr9 84526061 84526493 -33336134 + L1MB5 LINE L1 2964 3387 -3257 4718 160 63 10 chr9 84526465 84527605 -33335022 + L1MB5 LINE L1 5476 6672 0 * 495 168 75 19 chr9 84527602 84527709 -33334918 - L1MC4 LINE L1 -11 8031 7919 * 202 96 0 96 chr9 84527719 84527771 -33334856 + (TTCTCC)n Simple_repeat Simple_repeat 6 52 0 207 215 0 0 chr9 84527773 84527838 -33334789 + CT-rich Low_complexity Low_complexity 1 65 0 336 48 0 0 chr9 84527838 84527880 -33334747 + (TG)n Simple_repeat Simple_repeat 1 42 0 3942 168 26 97 chr9 84527883 84528932 -33333695 - L1MC4a LINE L1 -161 7647 6674 2267 82 3 7 chr9 84529000 84529294 -33333333 - AluSx SINE Alu -19 293 1 815 271 57 69 chr9 84529577 84530086 -33332541 + MLT1J LTR MaLR 1 503 -8 353 328 32 32 chr9 84530162 84530351 -33332276 + L3 LINE CR1 1365 1553 -24 2314 86 23 0 chr9 84530442 84530746 -33331881 - AluY SINE Alu 0 311 1 1021 171 17 23 chr9 84531043 84531218 -33331409 + FAM SINE Alu 2 175 0 364 275 7 72 chr9 84531698 84531836 -33330791 + MER5A DNA MER1_type 58 186 -3 2159 123 17 0 chr9 84532288 84532588 -33330039 - AluSx SINE Alu -7 305 1 330 293 211 10 chr9 84533843 84534051 -33328576 + MIR SINE MIR 6 255 -7 1611 192 0 46 chr9 84534112 84534414 -33328213 + AluJo SINE Alu 1 288 -24 2474 77 10 3 chr9 84534425 84534735 -33327892 + AluSq SINE Alu 1 312 -1 2303 107 3 0 chr9 84536024 84536332 -33326295 + AluSq SINE Alu 1 309 -4 2462 87 3 0 chr9 84536971 84537281 -33325346 + AluSp SINE Alu 1 311 -2 277 299 68 27 chr9 84537687 84537834 -33324793 - MIR SINE MIR -38 224 72 2469 62 0 10 chr9 84537974 84538278 -33324349 - AluY SINE Alu -10 301 1 2405 92 3 0 chr9 84538673 84538977 -33323650 - AluSc SINE Alu -4 305 1 230 259 65 93 chr9 84539499 84539550 -33323077 + L1ME LINE L1 5556 5607 -514 1936 98 0 81 chr9 84539550 84539879 -33322748 + AluSx SINE Alu 1 304 0 230 259 65 93 chr9 84539879 84539934 -33322693 + L1ME LINE L1 5607 5660 -461 263 298 58 10 chr9 84540042 84540146 -33322481 + L2 LINE L2 2376 2484 -830 22 0 0 0 chr9 84540401 84540423 -33322204 + AT_rich Low_complexity Low_complexity 1 22 0 387 237 111 37 chr9 84540540 84540675 -33321952 + MER115 DNA AcHobo 60 204 -489 340 297 0 0 chr9 84540742 84540853 -33321774 + MER115 DNA AcHobo 329 439 -254 2214 131 0 6 chr9 84541056 84541370 -33321257 + AluSx SINE Alu 1 312 0 410 277 72 6 chr9 84541458 84541624 -33321003 - L1ME4a LINE L1 -160 5961 5785 220 279 76 25 chr9 84541849 84541928 -33320699 - L2 LINE L2 -250 3022 2940 2414 85 7 0 chr9 84541932 84542237 -33320390 + AluSx SINE Alu 1 307 -5 443 254 52 22 chr9 84542377 84542511 -33320116 - L2 LINE L2 -588 2726 2589 341 284 158 26 chr9 84542898 84543088 -33319539 - MIR SINE MIR 0 262 48 183 246 0 0 chr9 84543093 84543150 -33319477 + (TAAA)n Simple_repeat Simple_repeat 4 60 0 1869 165 16 7 chr9 84543315 84543624 -33319003 - AluSx SINE Alu 0 312 1 325 298 78 16 chr9 84543631 84543822 -33318805 - L1ME4a LINE L1 -238 5883 5681 827 136 8 8 chr9 84543840 84543965 -33318662 - FLAM_C SINE Alu -18 125 1 22 56 0 0 chr9 84544002 84544038 -33318589 + AT_rich Low_complexity Low_complexity 1 36 0 659 279 78 30 chr9 84544043 84544509 -33318118 - L1ME4a LINE L1 -439 5682 5176 34 72 0 0 chr9 84544614 84544683 -33317944 + AT_rich Low_complexity Low_complexity 1 69 0 510 244 63 16 chr9 84544834 84544961 -33317666 + MIR SINE MIR 8 140 -122 2102 94 0 27 chr9 84545098 84545395 -33317232 - AluSc SINE Alu -20 289 1 1845 184 0 0 chr9 84545685 84545994 -33316633 - AluJb SINE Alu -3 309 1 1369 174 53 39 chr9 84546302 84546584 -33316043 - AluJo SINE Alu -26 286 1 4021 179 26 5 chr9 84546665 84547432 -33315195 - L1MB7 LINE L1 -19 6165 5383 1235 190 25 104 chr9 84547441 84547836 -33314791 - L1ME4a LINE L1 -994 5152 4789 1911 145 3 0 chr9 84548330 84548613 -33314014 - AluSx SINE Alu -28 284 1 659 224 59 71 chr9 84549268 84549405 -33313222 + L1M4 LINE L1 5152 5287 -859 2177 92 0 7 chr9 84549405 84549711 -33312916 + AluSx SINE Alu 2 305 0 659 224 59 71 chr9 84549711 84549826 -33312801 + L1M4 LINE L1 5287 5402 -744 * 1746 228 125 70 chr9 84549823 84550456 -33312171 + HAL1 LINE L1 375 1064 -1443 2034 132 0 10 chr9 84550456 84550751 -33311876 + AluSx SINE Alu 10 301 -11 1746 228 125 70 chr9 84550751 84550932 -33311695 + HAL1 LINE L1 1064 1234 -1273 26 0 0 0 chr9 84551216 84551242 -33311385 + AT_rich Low_complexity Low_complexity 1 26 0 408 187 64 3 chr9 84551242 84551256 -33311371 + L1MC3 LINE L1 7504 7516 -479 1723 183 0 7 chr9 84551256 84551564 -33311063 + AluJb SINE Alu 3 308 0 408 187 64 3 chr9 84551564 84551660 -33310967 + L1MC3 LINE L1 7516 7816 -179 830 221 70 87 chr9 84551678 84552094 -33310533 - LTR7 LTR ERV1 -17 433 25 1137 142 11 6 chr9 84552124 84552307 -33310320 + L1MC3 LINE L1 7595 7778 -7 2074 142 0 0 chr9 84552307 84552610 -33310017 + AluSx SINE Alu 1 303 -9 903 172 0 0 chr9 84552847 84552992 -33309635 + FRAM SINE Alu 22 166 -10 277 184 85 121 chr9 84553512 84553653 -33308974 - L1MC4 LINE L1 0 8042 7907 186 179 0 0 chr9 84553664 84553720 -33308907 + (TA)n Simple_repeat Simple_repeat 2 57 0 209 303 17 6 chr9 84553732 84553907 -33308720 + (TA)n Simple_repeat Simple_repeat 2 178 0 382 278 28 0 chr9 84553907 84554015 -33308612 - L1MC4 LINE L1 -129 7913 7803 577 279 43 0 chr9 84554329 84554490 -33308137 - MIR SINE MIR -25 237 70 207 0 0 0 chr9 84554522 84554545 -33308082 + (TG)n Simple_repeat Simple_repeat 2 24 0 688 274 108 9 chr9 84555079 84555291 -33307336 - MIR SINE MIR -2 260 28 962 186 37 5 chr9 84555496 84555684 -33306943 + MER58A DNA MER1_type 31 224 0 2031 183 28 14 chr9 84556315 84556675 -33305952 - MLT1A1 LTR MaLR 0 365 1 2178 134 0 3 chr9 84556682 84556995 -33305632 + AluSx SINE Alu 1 312 0 2300 109 0 10 chr9 84557162 84557475 -33305152 + AluSg SINE Alu 1 310 0 963 274 42 0 chr9 84557991 84558228 -33304399 - MIR SINE MIR -1 261 15 1108 301 39 32 chr9 84558790 84558837 -33303790 - L3 LINE CR1 -3 1574 1529 1966 140 0 29 chr9 84558837 84559144 -33303483 + AluJb SINE Alu 2 299 -13 1108 301 39 32 chr9 84559144 84559504 -33303123 - L3 LINE CR1 -48 1529 1164 2493 119 28 22 chr9 84559603 84559965 -33302662 - THE1B LTR MaLR 0 364 1 804 147 0 23 chr9 84560089 84560218 -33302409 + FLAM_C SINE Alu 1 126 -17 558 215 96 25 chr9 84560248 84560435 -33302192 - MIR SINE MIR -4 258 58 621 296 11 17 chr9 84560685 84560864 -33301763 - MIR SINE MIR -51 211 34 849 236 11 6 chr9 84561259 84561441 -33301186 - MER5A DNA MER1_type 0 189 7 207 211 123 0 chr9 84562461 84562518 -33300109 - L2 LINE L2 -9 3304 3241 631 304 105 42 chr9 84562612 84562828 -33299799 + L2 LINE L2 2893 3094 -219 1674 153 4 21 chr9 84562828 84563109 -33299518 - AluJb SINE Alu -36 276 1 631 304 105 42 chr9 84563109 84563274 -33299353 + L2 LINE L2 3094 3298 -15 1867 145 3 3 chr9 84563492 84563789 -33298838 + AluSx SINE Alu 12 308 -4 327 222 151 24 chr9 84563820 84563946 -33298681 - MIR SINE MIR -61 201 60 285 264 204 19 chr9 84565914 84566071 -33296556 + MIR3 SINE MIR 2 184 -71 529 266 141 26 chr9 84566823 84566971 -33295656 + MIR SINE MIR 19 195 -67 2258 92 3 13 chr9 84566971 84567276 -33295351 - AluSq SINE Alu -11 302 1 529 266 141 26 chr9 84567276 84567319 -33295308 + MIR SINE MIR 195 232 -30 2477 50 0 10 chr9 84567399 84567698 -33294929 - AluY SINE Alu -15 296 1 429 312 43 14 chr9 84568802 84568943 -33293684 - MIR SINE MIR -110 152 8 564 135 0 0 chr9 84569069 84569180 -33293447 + (TTCC)n Simple_repeat Simple_repeat 4 114 0 1415 198 66 7 chr9 84569188 84569476 -33293151 - AluJb SINE Alu -7 305 1 198 0 0 0 chr9 84569484 84569506 -33293121 + (T)n Simple_repeat Simple_repeat 1 22 0 23 24 0 24 chr9 84569611 84569631 -33292996 + AT_rich Low_complexity Low_complexity 1 20 -20 1667 153 46 18 chr9 84569631 84569913 -33292714 - AluSx SINE Alu -22 290 1 23 24 0 24 chr9 84569913 84569933 -33292694 + AT_rich Low_complexity Low_complexity 20 40 0 237 108 0 0 chr9 84569933 84569970 -33292657 + (TG)n Simple_repeat Simple_repeat 2 38 0 507 259 147 26 chr9 84570487 84570983 -33291644 - L1ME4a LINE L1 -11 6110 5556 531 180 0 30 chr9 84571543 84571643 -33290984 + LTR32 LTR ERVL 15 111 -360 268 200 60 0 chr9 84571644 84571694 -33290933 + LTR32 LTR ERVL 316 368 -103 836 153 20 20 chr9 84571694 84571844 -33290783 + LTR32 LTR ERVL 317 466 -5 645 302 62 4 chr9 84572056 84572281 -33290346 + MIR SINE MIR 20 257 -5 1072 237 4 13 chr9 84572636 84572868 -33289759 + MIR SINE MIR 3 232 -30 589 343 78 50 chr9 84573612 84574009 -33288618 - L2 LINE L2 -339 2975 2568 1960 230 65 65 chr9 84574017 84574767 -33287860 - MER52A LTR ERV1 0 1755 544 1155 151 73 116 chr9 84574783 84575252 -33287375 - MER52A LTR ERV1 -413 1232 437 2180 110 3 7 chr9 84576751 84577050 -33285577 + AluSg SINE Alu 2 299 -11 1095 162 138 21 chr9 84577674 84577964 -33284663 + MER33 DNA MER1_type 1 324 0 947 172 252 8 chr9 84578172 84578410 -33284217 + AluSx SINE Alu 1 296 -16 2183 114 0 25 chr9 84578644 84578959 -33283668 - AluSx SINE Alu -4 308 2 2133 86 4 0 chr9 84578960 84579229 -33283398 - AluSx SINE Alu -9 303 34 2130 117 3 16 chr9 84579296 84579603 -33283024 + AluSq SINE Alu 2 304 -9 873 209 61 0 chr9 84579873 84580069 -33282558 - MER3 DNA MER1_type -1 208 1 1760 167 0 30 chr9 84581133 84581433 -33281194 + AluJo SINE Alu 7 297 -15 4290 158 129 106 chr9 84581623 84582314 -33280313 + L1 LINE L1 3415 4265 -1881 750 169 0 0 chr9 84582314 84582432 -33280195 - AluSg/x SINE Alu -16 296 179 4290 158 129 106 chr9 84582432 84582884 -33279743 + L1 LINE L1 4265 4705 -1441 2085 85 0 0 chr9 84582888 84583146 -33279481 + AluSx SINE Alu 40 297 -15 277 373 17 0 chr9 84583471 84583589 -33279038 - MIR SINE MIR -67 141 22 234 318 132 31 chr9 84583897 84584026 -33278601 + MIR3 SINE MIR 16 157 -51 270 278 178 11 chr9 84584197 84584287 -33278340 + MER5A DNA MER1_type 85 189 0 2286 80 35 0 chr9 84584946 84585233 -33277394 - AluSx SINE Alu -15 297 1 4245 204 34 16 chr9 84585244 84587032 -33275595 - L1MB2 LINE L1 -39 6132 4304 30 27 0 0 chr9 84588119 84588156 -33274471 + AT_rich Low_complexity Low_complexity 1 37 0 198 0 0 0 chr9 84588163 84588185 -33274442 + (TA)n Simple_repeat Simple_repeat 1 22 0 189 243 0 0 chr9 84589196 84589233 -33273394 - L2 LINE L2 -215 3057 3021 1844 174 3 7 chr9 84589461 84589765 -33272862 + AluJb SINE Alu 1 303 -9 1899 158 58 0 chr9 84590475 84590804 -33271823 - MER7A DNA MER2_type 0 346 1 237 211 0 19 chr9 84592705 84592757 -33269870 + CT-rich Low_complexity Low_complexity 4 54 0 195 344 21 73 chr9 84594305 84594401 -33268226 - MIR SINE MIR -93 115 25 2300 89 0 3 chr9 84594403 84594695 -33267932 + AluY SINE Alu 3 293 -18 342 222 14 14 chr9 84594853 84594925 -33267702 - L2 LINE L2 -16 3297 3226 1917 159 3 0 chr9 84596727 84597028 -33265599 - AluJo SINE Alu -8 304 3 23 33 0 0 chr9 84597033 84597063 -33265564 + AT_rich Low_complexity Low_complexity 1 30 0 342 0 0 0 chr9 84597580 84597618 -33265009 + (TG)n Simple_repeat Simple_repeat 1 38 0 195 42 0 0 chr9 84597619 84597643 -33264984 + (T)n Simple_repeat Simple_repeat 1 24 0 2216 90 3 23 chr9 84597728 84598029 -33264598 - AluSx SINE Alu -17 295 1 25 0 0 0 chr9 84598137 84598162 -33264465 + AT_rich Low_complexity Low_complexity 1 25 0 1811 166 0 7 chr9 84598215 84598510 -33264117 - AluJb SINE Alu -16 296 4 739 281 106 0 chr9 84601181 84601416 -33261211 + MIR SINE MIR 2 261 -1 960 197 89 68 chr9 84601579 84601935 -33260692 - MSTB2 LTR MaLR -2 455 17 207 0 0 0 chr9 84601972 84601995 -33260632 + (T)n Simple_repeat Simple_repeat 1 23 0 2334 64 0 0 chr9 84602087 84602367 -33260260 - AluY SINE Alu -17 294 15 565 291 172 15 chr9 84603493 84604033 -33258594 - L1MC4a LINE L1 -1888 5920 5296 4642 155 31 7 chr9 84604294 84605122 -33257505 - L1MC1 LINE L1 0 6613 5766 581 153 38 38 chr9 84605122 84605272 -33257355 - L1MC/D LINE L1 -885 5448 5296 44032 38 2 2 chr9 84605945 84612086 -33250541 - L1PA3 LINE L1 -3 6152 7 439 240 70 20 chr9 84612091 84612133 -33250494 - L1MC1 LINE L1 -834 5592 5554 2212 84 17 0 chr9 84612133 84612429 -33250198 + AluY SINE Alu 1 301 -10 439 240 70 20 chr9 84612429 84612586 -33250041 - L1MC1 LINE L1 -872 5554 5383 254 158 53 0 chr9 84612584 84612641 -33249986 - L1MC1 LINE L1 -1337 5089 5030 * 645 72 0 21 chr9 84612641 84612738 -33249889 - AluY SINE Alu -11 300 206 5007 234 68 15 chr9 84612765 84614273 -33248354 - L1MC1 LINE L1 -1428 4998 3572 1698 204 3 3 chr9 84614273 84614582 -33248045 - AluJo SINE Alu -3 309 1 5007 234 68 15 chr9 84614582 84614629 -33247998 - L1MC1 LINE L1 -2854 3572 3529 324 48 0 0 chr9 84614629 84614671 -33247956 + (TTA)n Simple_repeat Simple_repeat 1 42 0 5007 234 68 15 chr9 84614671 84614724 -33247903 - L1MC1 LINE L1 -2897 3529 3303 2163 152 12 3 chr9 84614724 84615067 -33247560 - MER7A DNA MER2_type -1 345 2 701 170 14 0 chr9 84615080 84615227 -33247400 - L1MC1 LINE L1 -3126 3300 3152 888 106 49 0 chr9 84615229 84615352 -33247275 - AluSq/x SINE Alu -180 133 5 725 244 77 31 chr9 84615356 84615643 -33246984 - L1MC1 LINE L1 -3266 3160 2861 * 943 141 91 84 chr9 84615640 84617183 -33245444 - L1MC1 LINE L1 -4319 2107 313 24 0 0 0 chr9 84617216 84617240 -33245387 + AT_rich Low_complexity Low_complexity 1 24 0 369 300 45 77 chr9 84617297 84617544 -33245083 + L3 LINE CR1 1335 1573 -4 1749 161 3 36 chr9 84617867 84618172 -33244455 - AluJo SINE Alu -17 295 1 387 272 154 25 chr9 84618555 84618717 -33243910 + MIR SINE MIR 31 213 -49 1796 146 23 33 chr9 84619323 84619625 -33243002 - AluJb SINE Alu -12 300 2 1274 176 130 7 chr9 84621012 84621296 -33241331 + MER2 DNA MER2_type 2 320 -25 1490 206 16 6 chr9 84621308 84621629 -33240998 - L1MC2 LINE L1 -19 6325 6002 257 278 49 42 chr9 84621629 84621687 -33240940 - L1M4 LINE L1 -1843 4303 4247 2355 97 0 0 chr9 84621687 84621997 -33240630 - AluSg SINE Alu 0 310 1 257 278 49 42 chr9 84621997 84622082 -33240545 - L1M4 LINE L1 -1899 4247 4159 * 337 241 74 0 chr9 84622069 84622177 -33240450 - L1M4 LINE L1 -2228 3918 3803 1361 153 0 19 chr9 84623212 84623427 -33239200 - AluSg/x SINE Alu -17 295 85 413 233 92 108 chr9 84623827 84624076 -33238551 - MIR SINE MIR -15 247 3 1942 83 101 0 chr9 84624325 84624602 -33238025 - AluSp SINE Alu -8 305 1 2408 73 0 0 chr9 84624613 84624915 -33237712 - AluY SINE Alu -9 302 1 210 268 67 63 chr9 84625640 84625776 -33236851 - MIR SINE MIR -63 145 25 29 0 0 0 chr9 84629207 84629236 -33233391 + AT_rich Low_complexity Low_complexity 1 29 0 1636 254 55 56 chr9 84631024 84631666 -33230961 - MER76 LTR ERV -21 667 27 22845 113 15 24 chr9 84631830 84636185 -33226442 + L1PA7 LINE L1 11 4404 -2057 23 0 0 0 chr9 84643099 84643122 -33219505 + AT_rich Low_complexity Low_complexity 1 23 0 22 56 0 0 chr9 84643346 84643382 -33219245 + AT_rich Low_complexity Low_complexity 1 36 0 22 70 0 0 chr9 84644113 84644156 -33218471 + AT_rich Low_complexity Low_complexity 1 43 0 9194 82 22 10 chr9 84644161 84646222 -33216405 + L1PA7 LINE L1 4383 6469 0 469 254 39 55 chr9 84647548 84647729 -33214898 - MER5B DNA MER1_type 0 178 1 2188 122 0 0 chr9 84649855 84650159 -33212468 - AluSg SINE Alu -6 304 1 2218 88 3 10 chr9 84650169 84650463 -33212164 - AluSp SINE Alu -21 292 1 780 106 0 0 chr9 84652127 84652240 -33210387 + L1MA2 LINE L1 6192 6304 0 607 309 196 56 chr9 84652503 84653056 -33209571 - L3 LINE CR1 -47 1530 1056 2091 113 0 3 chr9 84653056 84653375 -33209252 - AluSx SINE Alu 0 318 1 607 309 196 56 chr9 84653375 84653657 -33208970 - L3 LINE CR1 -521 1056 577 281 298 48 0 chr9 84654216 84654300 -33208327 + L2 LINE L2 3169 3256 -16 735 178 7 30 chr9 84655093 84655228 -33207399 + FLAM_C SINE Alu 1 132 -11 2581 237 125 27 chr9 84655972 84657157 -33205470 - L1ME3A LINE L1 -9 6161 4835 180 111 0 0 chr9 84657716 84657743 -33204884 + (T)n Simple_repeat Simple_repeat 1 27 0 285 232 0 43 chr9 84658105 84658174 -33204453 - L1ME1 LINE L1 -50 6128 6058 230 154 0 0 chr9 84658174 84658213 -33204414 - MER3 DNA MER1_type -160 49 11 2379 205 119 26 chr9 84658213 84658880 -33203747 - L1ME1 LINE L1 -148 6018 5244 1853 160 10 16 chr9 84658880 84659186 -33203441 - AluJb SINE Alu 0 312 9 2379 205 119 26 chr9 84659186 84659412 -33203215 - L1ME1 LINE L1 -922 5244 5040 21 36 0 0 chr9 84659562 84659590 -33203037 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr9 84659851 84659873 -33202754 + AT_rich Low_complexity Low_complexity 1 22 0 12692 35 7 0 chr9 84659874 84662193 -33200434 - L1PA5 LINE L1 -2 6152 3822 32 0 0 0 chr9 84666414 84666446 -33196181 + AT_rich Low_complexity Low_complexity 1 32 0 440 284 12 53 chr9 84667768 84667937 -33194690 + MIR SINE MIR 58 219 -43 477 210 50 0 chr9 84669007 84669107 -33193520 + MER3 DNA MER1_type 6 110 -99 258 152 22 0 chr9 84670327 84670373 -33192254 - LTR25 LTR ERV1 -10 784 738 4483 126 40 30 chr9 84670391 84671159 -33191468 - LTR25 LTR ERV1 -10 784 9 1144 306 109 29 chr9 84671181 84671740 -33190887 + MER115 DNA AcHobo 88 691 -2 318 254 110 48 chr9 84672681 84673110 -33189517 - L1MC5 LINE L1 -270 7772 7324 546 202 163 46 chr9 84673111 84673470 -33189157 - L1MC4 LINE L1 -728 7233 6860 368 136 0 0 chr9 84673871 84673930 -33188697 + AluJb SINE Alu 47 105 -197 539 90 0 0 chr9 84674926 84675004 -33187623 - AluS SINE Alu -235 78 1 212 319 33 33 chr9 84675025 84675116 -33187511 + MIR3 SINE MIR 87 177 -31 197 355 141 16 chr9 84675609 84675730 -33186897 + MIR3 SINE MIR 32 167 -41 2438 63 0 7 chr9 84675838 84676137 -33186490 + AluSq SINE Alu 1 297 -16 345 256 167 0 chr9 84676573 84676663 -33185964 - L2 LINE L2 0 3272 3168 457 245 252 7 chr9 84676692 84676835 -33185792 - MER5A DNA MER1_type 0 189 12 406 190 78 27 chr9 84676927 84677099 -33185528 - HAL1b LINE L1 -3 6118 1191 2364 104 3 0 chr9 84677245 84677553 -33185074 + AluSc SINE Alu 1 309 0 854 179 12 31 chr9 84677565 84677727 -33184900 + FRAM SINE Alu 1 159 -7 2253 186 104 69 chr9 84678551 84679250 -33183377 - LTR8A LTR ERV1 -3 724 1 207 0 0 0 chr9 84679438 84679461 -33183166 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 40786 52 4 1 chr9 84679614 84685738 -33176889 + L1PA5 LINE L1 11 6152 -2 217 339 32 73 chr9 84687057 84687181 -33175446 + L2 LINE L2 3142 3260 -12 331 350 142 32 chr9 84687190 84687724 -33174903 - L2 LINE L2 -168 3104 2514 1265 138 73 0 chr9 84688244 84688462 -33174165 + MER46A DNA MER2_type 2 235 -1 189 0 0 0 chr9 84688669 84688690 -33173937 + (TA)n Simple_repeat Simple_repeat 1 21 0 1994 141 0 14 chr9 84689391 84689688 -33172939 + AluSx SINE Alu 1 293 -19 1718 199 0 23 chr9 84689777 84690079 -33172548 + AluJo SINE Alu 1 295 -17 281 321 44 48 chr9 84690086 84690335 -33172292 + HAL1b LINE L1 249 496 -852 252 256 22 0 chr9 84690802 84690892 -33171735 + L1ME LINE L1 5647 5738 -383 525 184 117 0 chr9 84691013 84691116 -33171511 + MER5A DNA MER1_type 2 116 -73 310 270 30 10 chr9 84691162 84691262 -33171365 - L1ME LINE L1 -375 5746 5645 21 0 0 0 chr9 84691803 84691824 -33170803 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 84692584 84692606 -33170021 + AT_rich Low_complexity Low_complexity 1 22 0 40843 33 22 1 chr9 84692606 84698631 -33163996 - L1PA2 LINE L1 -1 6154 2 1660 178 20 34 chr9 84698636 84698934 -33163693 - AluJo SINE Alu -18 294 1 324 283 58 0 chr9 84699104 84699242 -33163385 - L1ME LINE L1 -417 5704 5559 474 301 120 5 chr9 84699616 84699825 -33162802 - MIR SINE MIR -1 261 29 307 252 131 54 chr9 84699890 84700106 -33162521 - L1ME LINE L1 -703 5418 5189 228 300 11 11 chr9 84700272 84700362 -33162265 - L1ME LINE L1 -1154 4992 4903 761 286 57 4 chr9 84700446 84700694 -33161933 + MIR SINE MIR 2 262 0 22 35 0 0 chr9 84700694 84700723 -33161904 + AT_rich Low_complexity Low_complexity 1 29 0 1674 185 7 4 chr9 84700980 84701261 -33161366 + AluJb SINE Alu 5 286 -26 1719 153 25 4 chr9 84701601 84701875 -33160752 + AluJo SINE Alu 21 300 -12 217 372 150 0 chr9 84702933 84703046 -33159581 - L2 LINE L2 -5 3267 3138 292 228 0 0 chr9 84704850 84704907 -33157720 - L2 LINE L2 -3 3310 3254 858 244 81 12 chr9 84705208 84705454 -33157173 + LTR33 LTR ERVL 3 265 -256 553 188 128 0 chr9 84705498 84705631 -33156996 + MER69 DNA AcHobo 1 150 -1076 2148 115 0 14 chr9 84705654 84705949 -33156678 + AluSx SINE Alu 1 291 -21 288 290 38 46 chr9 84706086 84706217 -33156410 - L2 LINE L2 -210 3062 2933 * 5453 233 125 35 chr9 84706214 84706524 -33156103 - L2 LINE L2 -313 3000 2720 1906 141 47 55 chr9 84706524 84706887 -33155740 + THE1B LTR MaLR 5 364 0 5453 233 125 35 chr9 84706887 84707184 -33155443 - L2 LINE L2 -593 2720 2451 2958 112 9 9 chr9 84707184 84707612 -33155015 - MSTA LTR MaLR 0 428 1 8502 153 75 8 chr9 84707612 84708795 -33153832 - MSTA-int LTR MaLR 0 1651 339 2127 140 10 0 chr9 84708795 84709095 -33153532 + AluSq SINE Alu 1 303 -10 8502 153 75 8 chr9 84709095 84709459 -33153168 - MSTA-int LTR MaLR -1312 339 1 2560 139 19 12 chr9 84709459 84709884 -33152743 - MSTA LTR MaLR 0 428 1 5453 233 125 35 chr9 84709884 84710914 -33151713 - L2 LINE L2 -862 2451 1180 1600 168 63 8 chr9 84710914 84711182 -33151445 + AluJb SINE Alu 1 283 -29 5453 233 125 35 chr9 84711182 84711338 -33151289 - L2 LINE L2 -2133 1180 1040 2101 138 117 2 chr9 84711357 84711776 -33150851 + L1MB7 LINE L1 5707 6173 -11 217 317 108 67 chr9 84712076 84712196 -33150431 - L2 LINE L2 -5 3267 3143 284 272 114 18 chr9 84712524 84712638 -33149989 + MIR SINE MIR 131 255 -7 239 294 28 46 chr9 84713237 84713346 -33149281 - MIR SINE MIR -37 225 119 752 308 142 58 chr9 84714651 84715249 -33147378 + L3 LINE CR1 69 716 -861 650 191 32 19 chr9 84715343 84715371 -33147256 + L1ME3A LINE L1 5107 5133 -1013 189 0 0 0 chr9 84715371 84715392 -33147235 + (CA)n Simple_repeat Simple_repeat 2 22 0 650 191 32 19 chr9 84715392 84715557 -33147070 + L1ME3A LINE L1 5133 5296 -850 * 1658 230 43 45 chr9 84715555 84715908 -33146719 - L1M4 LINE L1 -2125 4021 3668 2091 69 6 94 chr9 84715908 84716227 -33146400 - AluSx SINE Alu -6 306 16 1658 230 43 45 chr9 84716227 84716543 -33146084 - L1M4 LINE L1 -2478 3668 3353 236 239 183 0 chr9 84718069 84718140 -33144487 - MLT1L LTR MaLR -224 391 308 235 241 13 25 chr9 84718148 84718227 -33144400 - HAL1 LINE L1 -1773 734 657 1127 258 144 8 chr9 84718233 84718844 -33143783 - MER20B DNA MER1_type -25 758 2 1992 106 0 15 chr9 84718987 84719261 -33143366 - AluSx SINE Alu -5 307 38 1931 135 37 17 chr9 84720109 84720406 -33142221 - AluJb SINE Alu -9 303 1 443 267 69 73 chr9 84721030 84721111 -33141516 + L1ME3A LINE L1 5686 5766 -404 2133 124 0 3 chr9 84721111 84721410 -33141217 + AluSx SINE Alu 1 298 -14 443 267 69 73 chr9 84721410 84721560 -33141067 + L1ME3A LINE L1 5766 5916 -254 3513 91 23 6 chr9 84721952 84722480 -33140147 + L1MA3 LINE L1 5769 6305 0 305 297 82 78 chr9 84722481 84722737 -33139890 + L1ME3A LINE L1 5892 6148 -22 185 0 40 0 chr9 84723119 84723144 -33139483 + (TA)n Simple_repeat Simple_repeat 2 27 0 21 0 0 0 chr9 84723833 84723854 -33138773 + AT_rich Low_complexity Low_complexity 1 21 0 183 42 0 0 chr9 84724035 84724059 -33138568 + (TTA)n Simple_repeat Simple_repeat 1 24 0 1235 101 0 0 chr9 84724060 84724229 -33138398 - L1PA8 LINE L1 -13 6159 5991 206 358 127 30 chr9 84725452 84725586 -33137041 + L2 LINE L2 3104 3250 -22 24 0 0 0 chr9 84725715 84725739 -33136888 + AT_rich Low_complexity Low_complexity 1 24 0 2044 236 95 10 chr9 84725783 84726396 -33136231 - L1MC4 LINE L1 -140 7902 7238 1726 240 74 56 chr9 84726376 84726943 -33135684 - L1MC4a LINE L1 -789 7019 6443 * 251 271 143 0 chr9 84727516 84727586 -33135041 + MIR SINE MIR 71 150 -58 6006 85 24 31 chr9 84727793 84728454 -33134173 - L1PA13 LINE L1 -1 6162 5494 279 0 0 0 chr9 84728454 84728485 -33134142 + (TTTTA)n Simple_repeat Simple_repeat 4 34 0 6006 85 24 31 chr9 84728485 84728986 -33133641 - L1PA13 LINE L1 -669 5494 4991 21 82 0 0 chr9 84728992 84729041 -33133586 + AT_rich Low_complexity Low_complexity 1 49 0 1999 143 0 10 chr9 84729121 84729422 -33133205 + AluSx SINE Alu 1 298 -14 219 345 150 9 chr9 84729592 84729705 -33132922 - MIR SINE MIR -64 144 16 403 236 57 64 chr9 84729989 84730129 -33132498 - L2 LINE L2 0 3313 3175 2073 147 7 0 chr9 84731315 84731622 -33131005 - AluSx SINE Alu -3 309 1 2131 159 56 21 chr9 84732115 84732645 -33129982 - Tigger7 DNA MER2_type 0 2487 2 21 0 0 0 chr9 84732712 84732733 -33129894 + AT_rich Low_complexity Low_complexity 1 21 0 472 227 21 0 chr9 84733140 84733237 -33129390 + MER94 DNA DNA 1 99 -35 22 70 0 0 chr9 84733527 84733570 -33129057 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr9 84734136 84734158 -33128469 + AT_rich Low_complexity Low_complexity 1 22 0 643 158 9 18 chr9 84734200 84734314 -33128313 + FLAM_A SINE Alu 22 134 -8 318 25 0 0 chr9 84734733 84734773 -33127854 + MADE1 DNA Mariner 4 43 -37 2346 42 42 7 chr9 84735226 84735514 -33127113 + AluY SINE Alu 1 298 -13 26 64 0 0 chr9 84735545 84735592 -33127035 + AT_rich Low_complexity Low_complexity 1 47 0 420 317 49 21 chr9 84735623 84735765 -33126862 - L2 LINE L2 -6 3266 3121 411 219 219 0 chr9 84736116 84736253 -33126374 - MER104 DNA Tc2 0 180 14 23 0 0 0 chr9 84736290 84736313 -33126314 + AT_rich Low_complexity Low_complexity 1 23 0 485 210 0 30 chr9 84736874 84736974 -33125653 - MIR SINE MIR -12 250 154 * 837 256 10 0 chr9 84736971 84737166 -33125461 + MIR SINE MIR 30 226 -36 423 0 0 0 chr9 84737214 84737261 -33125366 + (TAG)n Simple_repeat Simple_repeat 1 47 0 1112 288 99 31 chr9 84737887 84738492 -33124135 - L1MC4a LINE L1 -1642 6166 5521 420 323 41 64 chr9 84738914 84739134 -33123493 - MIR SINE MIR -27 235 21 361 289 39 0 chr9 84739126 84739230 -33123397 + MIR SINE MIR 154 261 -1 * 198 143 0 0 chr9 84739238 84739273 -33123354 + (TTA)n Simple_repeat Simple_repeat 1 35 0 585 250 14 20 chr9 84739665 84739813 -33122814 - MIR SINE MIR 0 262 116 186 320 77 26 chr9 84740131 84740209 -33122418 - L2 LINE L2 -52 3220 3139 597 267 60 22 chr9 84740393 84740625 -33122002 - L1ME LINE L1 -377 5744 5504 1599 190 26 13 chr9 84740784 84741089 -33121538 + AluJo SINE Alu 1 309 -3 328 308 185 5 chr9 84741295 84741490 -33121137 + MIR SINE MIR 28 257 -5 2314 244 65 39 chr9 84742177 84742669 -33119958 - L1ME3A LINE L1 -8 6162 5684 1852 175 52 6 chr9 84742669 84743018 -33119609 - MLT1A1 LTR MaLR 0 365 1 2314 244 65 39 chr9 84743018 84743406 -33119221 - L1ME3A LINE L1 -486 5684 5189 1986 144 27 0 chr9 84743406 84743705 -33118922 - AluSx SINE Alu 0 312 6 2314 244 65 39 chr9 84743705 84743878 -33118749 - L1ME3A LINE L1 -981 5189 5022 551 152 11 0 chr9 84743905 84743997 -33118630 - L1MD3 LINE L1 -173 7822 7730 2059 188 52 28 chr9 84745005 84745506 -33117121 + L1ME2 LINE L1 5642 6154 -10 597 159 9 18 chr9 84745540 84745653 -33116974 + AluJo SINE Alu 25 136 -176 3939 46 0 16 chr9 84746155 84746652 -33115975 + L1PA5 LINE L1 5666 6154 0 335 305 82 79 chr9 84746735 84747115 -33115512 + L1M4 LINE L1 3364 3744 -2402 421 291 12 60 chr9 84747163 84747290 -33115337 + L1M4 LINE L1 3865 3996 -2150 2051 128 10 0 chr9 84747290 84747588 -33115039 + AluSx SINE Alu 1 301 -11 421 291 12 60 chr9 84747588 84747779 -33114848 + L1M4 LINE L1 3996 4168 -1978 7737 18 0 1 chr9 84747910 84748867 -33113760 + L1PA2 LINE L1 5196 6151 -4 41 0 0 0 chr9 84748867 84748908 -33113719 + AT_rich Low_complexity Low_complexity 1 41 0 2150 123 0 7 chr9 84750562 84750872 -33111755 - AluSx SINE Alu -4 308 1 389 242 11 11 chr9 84751152 84751243 -33111384 - MLT1K LTR MaLR -299 289 199 23 68 0 0 chr9 84752635 84752679 -33109948 + AT_rich Low_complexity Low_complexity 1 44 0 199 289 183 35 chr9 84754478 84754620 -33108007 - MIR3 SINE MIR -16 192 30 432 297 153 5 chr9 84755769 84755971 -33106656 + MIR SINE MIR 20 251 -11 2144 130 0 7 chr9 84756711 84757019 -33105608 + AluSx SINE Alu 5 310 -2 700 245 7 13 chr9 84757732 84757887 -33104740 - MER90 LTR ERV1 -8 606 453 2519 247 70 21 chr9 84757972 84758318 -33104309 + L1MC/D LINE L1 3789 4116 -2030 243 0 0 0 chr9 84758318 84758345 -33104282 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2519 247 70 21 chr9 84758345 84758870 -33103757 + L1MC/D LINE L1 4116 4703 -1443 221 264 23 0 chr9 84758936 84758996 -33103631 - MIR SINE MIR -90 172 112 27 0 0 0 chr9 84759079 84759106 -33103521 + AT_rich Low_complexity Low_complexity 1 27 0 2712 169 29 37 chr9 84759129 84759185 -33103442 + L1MC/D LINE L1 4705 4760 -1485 2201 152 18 28 chr9 84759185 84759579 -33103048 + MLT1B LTR MaLR 1 390 0 2712 169 29 37 chr9 84759579 84759722 -33102905 + L1MC/D LINE L1 4760 4903 -1342 1656 168 3 19 chr9 84759722 84760031 -33102596 - AluJo SINE Alu -8 304 1 2712 169 29 37 chr9 84760031 84760642 -33101985 + L1MC/D LINE L1 4903 5502 -743 480 180 72 9 chr9 84761424 84761535 -33101092 + MER3 DNA MER1_type 65 182 -27 421 304 76 40 chr9 84761559 84761783 -33100844 + MIR SINE MIR 23 254 -8 545 259 68 63 chr9 84764964 84765169 -33097458 - MIR SINE MIR -55 207 2 22 0 0 0 chr9 84765739 84765761 -33096866 + AT_rich Low_complexity Low_complexity 1 22 0 186 260 10 62 chr9 84765879 84765975 -33096652 + L2 LINE L2 2575 2665 -649 2622 53 0 0 chr9 84766016 84766320 -33096307 + AluY SINE Alu 1 304 -7 328 268 98 27 chr9 84766429 84766541 -33096086 - L2 LINE L2 -3 3310 3191 275 311 28 28 chr9 84767023 84767200 -33095427 + L1M4 LINE L1 2656 2832 -3314 285 228 61 35 chr9 84767496 84767610 -33095017 + L1P LINE L1 3190 3306 -2840 258 282 14 0 chr9 84767806 84767877 -33094750 + (TGGA)n Simple_repeat Simple_repeat 4 75 0 742 145 0 58 chr9 84768049 84768187 -33094440 + FLAM_C SINE Alu 9 138 -5 2006 126 25 0 chr9 84769029 84769314 -33093313 - AluSx SINE Alu -20 292 1 596 231 7 50 chr9 84769517 84769808 -33092819 + MER115 DNA AcHobo 4 435 -258 246 235 20 0 chr9 84769810 84769861 -33092766 + Zaphod DNA AcHobo 3971 4022 -9 647 247 103 34 chr9 84770182 84770360 -33092267 - MLT1I LTR MaLR -11 439 275 1986 116 4 11 chr9 84770360 84770637 -33091990 - AluSx SINE Alu -35 277 3 647 247 103 34 chr9 84770637 84770792 -33091835 - MLT1I LTR MaLR -175 275 44 186 314 20 0 chr9 84770862 84770913 -33091714 - L2 LINE L2 -11 3261 3210 * 608 265 128 15 chr9 84770884 84771088 -33091539 - MIR SINE MIR -28 234 8 375 271 102 40 chr9 84771224 84771312 -33091315 - L2 LINE L2 -124 3189 3108 378 0 0 0 chr9 84771312 84771354 -33091273 + (TG)n Simple_repeat Simple_repeat 1 42 0 375 271 102 40 chr9 84771354 84771365 -33091262 - L2 LINE L2 -205 3108 3099 1035 171 12 0 chr9 84771365 84771535 -33091092 - FAM SINE Alu -3 172 1 375 271 102 40 chr9 84771535 84771611 -33091016 - L2 LINE L2 -214 3099 3002 * 622 190 0 8 chr9 84771604 84771725 -33090902 + L2 LINE L2 3193 3312 -1 * 1212 227 66 7 chr9 84771724 84772088 -33090539 - L2 LINE L2 -304 3009 2625 248 276 20 109 chr9 84772170 84772326 -33090301 - MER5A DNA MER1_type 0 189 27 246 200 13 40 chr9 84772658 84772733 -33089894 + (CGG)n Simple_repeat Simple_repeat 2 74 0 1556 188 68 113 chr9 84774072 84774587 -33088040 + Charlie4a DNA MER1_type 14 505 -3 200 217 0 0 chr9 84774952 84774998 -33087629 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 1759 119 4 0 chr9 84775356 84775599 -33087028 + AluSq SINE Alu 1 244 -69 555 101 34 22 chr9 84775599 84775688 -33086939 + AluSp/q SINE Alu 208 297 -16 197 344 0 0 chr9 84775704 84775765 -33086862 - MIR3 SINE MIR -10 198 138 205 229 104 0 chr9 84775884 84775932 -33086695 + L2 LINE L2 3207 3259 -13 2199 99 7 7 chr9 84776197 84776489 -33086138 + AluSc SINE Alu 6 297 -12 414 0 0 0 chr9 84776634 84776680 -33085947 + (CA)n Simple_repeat Simple_repeat 2 47 0 2012 113 7 45 chr9 84776832 84777142 -33085485 - AluSx SINE Alu -14 298 1 752 256 88 13 chr9 84777150 84777377 -33085250 - MIR SINE MIR -10 252 9 511 291 108 40 chr9 84777884 84778162 -33084465 - L3 LINE CR1 -350 1227 931 2270 119 0 0 chr9 84778172 84778483 -33084144 + AluSx SINE Alu 1 311 -1 2287 102 0 0 chr9 84779724 84780028 -33082599 + AluSx SINE Alu 1 304 -8 778 194 8 0 chr9 84781944 84782073 -33080554 + FLAM_A SINE Alu 1 130 -3 1877 115 61 4 chr9 84782366 84782645 -33079982 + AluSx SINE Alu 5 299 -13 418 220 29 104 chr9 84782713 84782886 -33079741 - MIR3 SINE MIR -40 168 9 1567 126 35 47 chr9 84783663 84783917 -33078710 - AluJo SINE Alu -56 256 6 2302 86 0 0 chr9 84784972 84785274 -33077353 + AluSc SINE Alu 1 302 0 888 161 0 0 chr9 84785407 84785537 -33077090 - FLAM_C SINE Alu -1 132 3 405 209 62 177 chr9 84785542 84785798 -33076829 - MIR SINE MIR -19 243 21 1000 68 0 0 chr9 84787560 84787677 -33074950 - L1PA7 LINE L1 -8 6146 6030 23 0 0 0 chr9 84787849 84787872 -33074755 + AT_rich Low_complexity Low_complexity 1 23 0 441 259 148 27 chr9 84788089 84788245 -33074382 - L1MC4a LINE L1 -743 5403 5267 1833 152 28 101 chr9 84788245 84788640 -33073987 + MER47A DNA MER2_type 1 366 0 441 259 148 27 chr9 84788640 84788695 -33073932 - L1MC4a LINE L1 -879 5267 5220 2086 112 46 23 chr9 84788695 84788999 -33073628 - AluSx SINE Alu -1 311 1 441 259 148 27 chr9 84788999 84789357 -33073270 - L1MC4a LINE L1 -926 5220 5349 2207 142 37 54 chr9 84789357 84789767 -33072860 - MER57A LTR ERV1 0 403 1 441 259 148 27 chr9 84789767 84790020 -33072607 - L1MC4a LINE L1 -796 5350 5129 593 182 19 88 chr9 84790645 84790804 -33071823 - LTR33 LTR ERVL -319 202 55 1675 116 0 0 chr9 84791398 84791631 -33070996 + AluSp SINE Alu 81 313 0 278 326 97 14 chr9 84791920 84792064 -33070563 - MIR SINE MIR -74 188 33 318 292 83 50 chr9 84793676 84793796 -33068831 - L2 LINE L2 -8 3305 3182 2098 141 0 6 chr9 84793884 84794196 -33068431 - AluJo SINE Alu -1 311 2 201 287 20 59 chr9 84794272 84794373 -33068254 - MIR SINE MIR -76 186 90 1380 84 0 185 chr9 84796812 84797098 -33065529 + MER39B LTR ERV1 1 233 -420 268 164 91 0 chr9 84797091 84797146 -33065481 + LTR29 LTR ERV1 561 620 -2 * 186 244 231 0 chr9 84797443 84797521 -33065106 + L2 LINE L2 3124 3219 -94 192 135 0 0 chr9 84798074 84798111 -33064516 + (A)n Simple_repeat Simple_repeat 1 37 0 186 43 0 0 chr9 84798360 84798383 -33064244 + (ATAGG)n Simple_repeat Simple_repeat 1 23 0 1942 137 10 3 chr9 84798523 84798822 -33063805 - AluSx SINE Alu -11 301 1 2495 227 95 64 chr9 84798830 84799761 -33062866 - L1ME3A LINE L1 -10 6160 5197 2070 136 0 3 chr9 84799761 84800069 -33062558 - AluJb SINE Alu -5 307 1 2495 227 95 64 chr9 84800069 84800169 -33062458 - L1ME3A LINE L1 -973 5197 5102 203 267 0 0 chr9 84800843 84800903 -33061724 + A-rich Low_complexity Low_complexity 1 60 0 615 322 77 4 chr9 84801163 84801396 -33061231 - MIR SINE MIR 0 262 13 439 312 45 0 chr9 84801508 84801665 -33060962 - MIR SINE MIR 0 262 99 2304 104 0 0 chr9 84801665 84801964 -33060663 - AluSc SINE Alu -10 299 1 3204 38 3 5 chr9 84802182 84802551 -33060076 + L1PA8 LINE L1 5804 6171 -1 1777 174 7 0 chr9 84803462 84803750 -33058877 - AluJo SINE Alu -21 291 2 460 206 48 32 chr9 84804253 84804379 -33058248 - L1ME3A LINE L1 -1338 4808 4681 23 0 0 0 chr9 84804930 84804953 -33057674 + AT_rich Low_complexity Low_complexity 1 23 0 1119 165 6 0 chr9 84804956 84805138 -33057489 + AluSq SINE Alu 131 313 0 2100 103 29 0 chr9 84805446 84805767 -33056860 + AluSx SINE Alu 1 329 0 922 150 0 0 chr9 84805826 84805959 -33056668 - FLAM_C SINE Alu 0 133 1 1100 116 0 177 chr9 84807077 84807354 -33055273 + L1MA4 LINE L1 6073 6300 0 819 183 78 91 chr9 84807631 84807732 -33054895 + MER20 DNA MER1_type 1 102 -117 186 43 0 0 chr9 84807732 84807755 -33054872 + (TG)n Simple_repeat Simple_repeat 1 23 0 819 183 78 91 chr9 84807755 84807872 -33054755 + MER20 DNA MER1_type 102 216 -3 2122 89 7 33 chr9 84807948 84808278 -33054349 + AluSq SINE Alu 1 313 0 28 0 0 0 chr9 84808563 84808591 -33054036 + AT_rich Low_complexity Low_complexity 1 28 0 508 280 75 6 chr9 84808645 84808813 -33053814 - MLT1D LTR MaLR 0 467 289 417 168 144 60 chr9 84808977 84809144 -33053483 - Charlie7 DNA MER1_type 0 2612 2432 1039 173 10 46 chr9 84809428 84809625 -33053002 - MLT1D-int LTR MaLR -202 1169 980 2819 213 63 47 chr9 84809826 84810679 -33051948 - MLT1D-int LTR MaLR -484 887 1 301 224 0 0 chr9 84810681 84810748 -33051879 - MLT1D LTR MaLR -2 503 437 527 213 219 60 chr9 84810776 84811019 -33051608 - MLT1D LTR MaLR -138 344 43 2390 181 105 19 chr9 84811153 84813213 -33049414 + SATR1 Satellite Satellite 1 1883 -4663 3409 119 51 6 chr9 84813213 84813702 -33048925 - MER9 LTR ERVK 0 511 1 2390 181 105 19 chr9 84813702 84817182 -33045445 + SATR1 Satellite Satellite 1883 6546 0 2386 160 115 10 chr9 84817218 84818011 -33044616 + SATR1 Satellite Satellite 1 876 0 2268 189 102 6 chr9 84818042 84818803 -33043824 + SATR1 Satellite Satellite 1 834 -218 2502 159 104 27 chr9 84818907 84821393 -33041234 - SATR1 Satellite Satellite -24 2676 1 2625 146 106 12 chr9 84821420 84821910 -33040717 - SATR1 Satellite Satellite -6 1740 1298 2570 44 0 0 chr9 84821910 84822208 -33040419 - AluY SINE Alu -13 298 1 2625 146 106 12 chr9 84822208 84823010 -33039617 - SATR1 Satellite Satellite -448 1298 1 7498 147 43 24 chr9 84823110 84824720 -33037907 + L1P LINE L1 1994 3633 -2513 1279 91 46 10 chr9 84824720 84824911 -33037716 + L1PA11 LINE L1 5971 6174 0 1428 227 73 9 chr9 84824930 84825371 -33037256 - L1M4 LINE L1 -1424 4722 4254 611 133 9 3 chr9 84825386 84825612 -33037015 + AluSx SINE Alu 1 306 -4 1252 222 24 0 chr9 84825618 84825906 -33036721 - L1M4 LINE L1 -1893 4253 3959 32 56 0 14 chr9 84826311 84826353 -33036274 + AT_rich Low_complexity Low_complexity 1 43 -27 4485 90 14 14 chr9 84826353 84827008 -33035619 - L1PB2 LINE L1 -3 6148 5494 32 56 0 14 chr9 84827008 84827036 -33035591 + AT_rich Low_complexity Low_complexity 43 70 0 314 324 75 12 chr9 84827129 84827302 -33035325 - L2 LINE L2 -1358 1956 1773 288 317 25 0 chr9 84827302 84827422 -33035205 + L1ME LINE L1 5539 5661 -503 358 254 51 25 chr9 84827654 84827772 -33034855 - MIR SINE MIR -91 171 51 11615 63 16 1 chr9 84827995 84830275 -33032352 + L1PA6 LINE L1 3839 6143 -11 2166 149 31 8 chr9 84830289 84830679 -33031948 - MSTB LTR MaLR -27 399 1 1514 204 32 36 chr9 84830679 84830712 -33031915 + L1MA9 LINE L1 5755 5787 -525 1275 165 13 13 chr9 84830712 84830948 -33031679 + MER46A DNA MER2_type 1 236 0 1514 204 32 36 chr9 84830948 84831354 -33031273 + L1MA9 LINE L1 5787 6192 -120 479 238 138 9 chr9 84831352 84831583 -33031044 + L1MEc LINE L1 1997 2257 -4139 * 276 204 0 0 chr9 84831676 84831725 -33030902 - AluJ/monomer SINE Alu -252 49 1 23 0 0 0 chr9 84831731 84831754 -33030873 + AT_rich Low_complexity Low_complexity 1 23 0 4771 113 35 63 chr9 84831754 84832135 -33030492 + Tigger3b DNA MER2_type 339 729 -2299 1293 139 46 0 chr9 84832135 84832373 -33030254 + L1MA4 LINE L1 6043 6291 -9 4771 113 35 63 chr9 84832373 84832909 -33029718 + Tigger3b DNA MER2_type 729 1230 -1 597 266 232 66 chr9 84832974 84833507 -33029120 - L2 LINE L2 0 3313 2697 1712 167 41 17 chr9 84833735 84834028 -33028599 - AluSg SINE Alu -10 300 1 1467 187 118 55 chr9 84834145 84834737 -33027890 - SATR1 Satellite Satellite -17 628 1 1770 212 117 0 chr9 84834769 84834888 -33027739 - SATR1 Satellite Satellite -1 469 365 7769 16 0 0 chr9 84834888 84836121 -33026506 - L1PA3 LINE L1 -1 6154 4923 1770 212 117 0 chr9 84836121 84836421 -33026206 - SATR1 Satellite Satellite -105 365 1 2256 176 114 3 chr9 84836448 84838035 -33024592 - SATR1 Satellite Satellite 0 1762 1 264 216 16 54 chr9 84838036 84838221 -33024406 + (TTA)n Simple_repeat Simple_repeat 2 179 0 416 231 5 38 chr9 84838232 84838418 -33024209 + (TTA)n Simple_repeat Simple_repeat 1 180 0 2116 188 99 11 chr9 84838426 84842921 -33019706 - SATR1 Satellite Satellite -1 4891 1 27 87 0 0 chr9 84842942 84843011 -33019616 + AT_rich Low_complexity Low_complexity 1 69 0 416 229 11 33 chr9 84843077 84843260 -33019367 + (TTA)n Simple_repeat Simple_repeat 1 179 0 2172 198 86 18 chr9 84843271 84844374 -33018253 - SATR1 Satellite Satellite -91 1177 1 9589 174 22 9 chr9 84844378 84846366 -33016261 - L1 LINE L1 -883 5263 3250 1774 215 128 51 chr9 84846474 84846657 -33015970 + L1ME1 LINE L1 5485 5653 -513 2224 117 7 3 chr9 84846657 84846965 -33015662 + AluSg SINE Alu 1 309 -1 1774 215 128 51 chr9 84846965 84847366 -33015261 + L1ME1 LINE L1 5653 6114 -52 13414 34 1 0 chr9 84847658 84849351 -33013276 - L1PA3 LINE L1 -1140 5006 3312 7937 11 0 0 chr9 84849352 84850495 -33012132 + L1PA3 LINE L1 5009 6151 -4 589 233 47 17 chr9 84850906 84851078 -33011549 - MER5B DNA MER1_type 0 178 2 325 304 33 0 chr9 84851218 84851310 -33011317 + L2 LINE L2 3174 3268 -4 8744 65 5 11 chr9 84853284 84854217 -33008410 - L1P LINE L1 -2287 3859 2922 252 0 0 0 chr9 84854217 84854245 -33008382 + (TTA)n Simple_repeat Simple_repeat 3 30 0 7029 57 0 1 chr9 84854245 84855875 -33006752 - L1PA5 LINE L1 -18 6136 4509 8744 65 5 11 chr9 84855875 84856176 -33006451 - L1P LINE L1 -3222 2924 2631 238 125 42 0 chr9 84856219 84856267 -33006360 - L1M2 LINE L1 -539 5761 5712 * 5447 227 46 18 chr9 84856261 84858786 -33003841 - L1 LINE L1 -2381 5184 2586 1287 179 3 83 chr9 84858798 84859088 -33003539 - AluJo SINE Alu -22 290 24 5430 238 31 29 chr9 84859093 84861490 -33001137 - L1M2c LINE L1 -4658 2510 2 1881 207 30 115 chr9 84861482 84861629 -33000998 - L1M4 LINE L1 -1010 6555 6397 * 1922 169 6 16 chr9 84861629 84861943 -33000684 - AluJb SINE Alu -1 311 1 1881 207 30 115 chr9 84861943 84862453 -33000174 - L1M4 LINE L1 -1168 6397 5845 2209 113 3 0 chr9 84862453 84862746 -32999881 - AluSx SINE Alu -18 294 1 1881 207 30 115 chr9 84862746 84862809 -32999818 - L1M4 LINE L1 -1720 5845 5778 2278 105 0 0 chr9 84862809 84863104 -32999523 - AluSx SINE Alu -17 295 1 1881 207 30 115 chr9 84863104 84863182 -32999445 - L1M4 LINE L1 -1787 5778 5831 1867 157 3 20 chr9 84863182 84863487 -32999140 - AluJb SINE Alu -12 300 1 1881 207 30 115 chr9 84863487 84863554 -32999073 - L1M4 LINE L1 -1733 5832 5761 7412 96 28 22 chr9 84863799 84865171 -32997456 - L1M4 LINE L1 -3756 3809 2423 1785 148 0 18 chr9 84865171 84865449 -32997178 - AluJb SINE Alu -4 308 36 9717 149 18 14 chr9 84865449 84867110 -32995517 - L1M4 LINE L1 -5886 1679 13 1269 255 12 16 chr9 84867110 84867541 -32995086 - L1M4 LINE L1 -978 5168 4740 1909 147 21 88 chr9 84867739 84868160 -32994467 + MLT2C1 LTR ERVL 5 397 0 824 227 19 8 chr9 84868166 84868422 -32994205 + L1 LINE L1 4399 4657 -1489 2231 168 5 41 chr9 84868422 84868706 -32993921 + ERVL LTR ERVL 4185 4449 -1315 1862 182 107 0 chr9 84868706 84869091 -32993536 - MSTB LTR MaLR 0 426 1 2231 168 5 41 chr9 84869091 84869241 -32993386 + ERVL LTR ERVL 4449 4603 -1161 968 205 160 18 chr9 84869913 84870213 -32992414 - MLT1J1 LTR MaLR -82 368 19 808 260 10 10 chr9 84871455 84871651 -32990976 + MIR SINE MIR 66 261 -1 922 190 38 11 chr9 84871882 84872066 -32990561 + MER5A DNA MER1_type 1 189 0 611 319 112 37 chr9 84872580 84872899 -32989728 + L2 LINE L2 2841 3197 -75 189 0 0 0 chr9 84872899 84872920 -32989707 + (CAAA)n Simple_repeat Simple_repeat 3 23 0 611 319 112 37 chr9 84872920 84873001 -32989626 + L2 LINE L2 3197 3271 -1 202 205 0 0 chr9 84873729 84873768 -32988859 - MIR SINE MIR -187 75 37 352 193 68 45 chr9 84874867 84874955 -32987672 + L2 LINE L2 3183 3272 0 850 264 192 22 chr9 84875951 84876424 -32986203 - L2 LINE L2 -51 3262 2871 1725 106 138 33 chr9 84876424 84876699 -32985928 - AluSq SINE Alu -9 304 1 850 264 192 22 chr9 84876699 84876710 -32985917 - L2 LINE L2 -442 2871 2863 2092 98 20 24 chr9 84876710 84877007 -32985620 - AluSg SINE Alu -14 296 1 850 264 192 22 chr9 84877007 84877136 -32985491 - L2 LINE L2 -450 2863 2543 275 308 34 34 chr9 84877696 84877842 -32984785 - MIR3 SINE MIR -15 193 48 317 178 14 27 chr9 84878829 84878902 -32983725 + L2 LINE L2 2193 2264 -1050 290 265 61 15 chr9 84879031 84879163 -32983464 + MIR SINE MIR 99 236 -26 34 65 0 0 chr9 84879756 84879818 -32982809 + AT_rich Low_complexity Low_complexity 1 62 0 2086 128 0 7 chr9 84879819 84880125 -32982502 + AluSx SINE Alu 1 304 -8 25 0 0 0 chr9 84880142 84880167 -32982460 + AT_rich Low_complexity Low_complexity 1 25 0 1422 98 30 55 chr9 84881034 84881270 -32981357 + MER30 DNA MER1_type 1 230 0 334 358 69 16 chr9 84881290 84881536 -32981091 + HAL1 LINE L1 826 1084 -1423 304 205 96 12 chr9 84881546 84881629 -32980998 - MER91C DNA MER1_type -24 116 27 264 242 158 11 chr9 84881658 84881753 -32980874 + MIR SINE MIR 34 142 -66 2052 115 35 0 chr9 84881902 84882188 -32980439 + AluSq SINE Alu 1 296 -17 324 0 0 0 chr9 84882202 84882238 -32980389 + (TG)n Simple_repeat Simple_repeat 1 36 0 344 281 42 95 chr9 84882643 84882727 -32979900 + L1MEd LINE L1 916 1003 -5116 2133 125 6 3 chr9 84882727 84883038 -32979589 + AluSx SINE Alu 1 312 0 344 281 42 95 chr9 84883038 84883259 -32979368 + L1MEd LINE L1 1003 1205 -4914 26 98 0 0 chr9 84883667 84883749 -32978878 + AT_rich Low_complexity Low_complexity 1 82 0 885 196 56 0 chr9 84884272 84884451 -32978176 - MER5A DNA MER1_type 0 189 1 22 56 0 0 chr9 84884581 84884617 -32978010 + AT_rich Low_complexity Low_complexity 1 36 0 1765 138 57 27 chr9 84884895 84885193 -32977434 + AluJo SINE Alu 1 307 -5 2127 99 0 3 chr9 84885545 84885850 -32976777 + AluSx SINE Alu 2 305 0 2117 103 30 3 chr9 84887114 84887414 -32975213 + AluSg SINE Alu 1 308 -2 294 305 0 12 chr9 84887725 84887807 -32974820 + L2 LINE L2 3232 3312 -1 238 206 143 63 chr9 84888321 84888384 -32974243 + MIR SINE MIR 7 74 -188 193 311 167 35 chr9 84888420 84888738 -32973889 + L2 LINE L2 2954 3313 0 1130 167 139 14 chr9 84890438 84890719 -32971908 + Charlie1b DNA MER1_type 10 325 -198 1394 61 35 30 chr9 84890720 84890942 -32971685 - AluSg/x SINE Alu 0 307 85 408 176 36 73 chr9 84890944 84891012 -32971615 + Charlie1b DNA MER1_type 319 388 -2373 1737 139 194 11 chr9 84891012 84891394 -32971233 - LTR47A LTR ERVL 0 452 1 408 176 36 73 chr9 84891394 84891490 -32971137 + Charlie1b DNA MER1_type 388 477 -46 394 294 72 5 chr9 84891498 84891692 -32970935 - L1ME1 LINE L1 -2 6164 5958 232 235 0 0 chr9 84891694 84891745 -32970882 + Charlie1b DNA MER1_type 471 521 -2 439 279 121 68 chr9 84891818 84892376 -32970251 - L1ME1 LINE L1 -767 5379 4978 254 198 99 12 chr9 84892568 84892649 -32969978 + LTR67 LTR ERVL 459 546 -11 325 272 80 75 chr9 84892694 84893268 -32969359 - L1ME1 LINE L1 -2029 4117 3541 231 318 76 0 chr9 84894604 84894670 -32967957 - L2 LINE L2 -9 3304 3234 408 289 92 7 chr9 84894805 84894957 -32967670 - MIR SINE MIR -62 200 36 334 204 184 0 chr9 84895258 84895356 -32967271 - L1ME3A LINE L1 -35 6135 6020 629 206 248 8 chr9 84895418 84895656 -32966971 + LTR50 LTR ERVL 488 782 -13 399 293 68 24 chr9 84895668 84895873 -32966754 - HERV16 LTR ERVL -2164 2832 2619 1059 300 79 0 chr9 84895958 84896375 -32966252 - HERV16 LTR ERVL -3224 2540 2091 954 97 0 22 chr9 84896375 84896509 -32966118 + FLAM_C SINE Alu 1 131 -2 1658 164 11 21 chr9 84897114 84897427 -32965200 - AluJo SINE Alu 0 310 1 1069 103 0 0 chr9 84897645 84897781 -32964846 + AluSx SINE Alu 1 136 -177 4958 18 0 0 chr9 84897781 84898383 -32964244 - L1PA2 LINE L1 -292 5863 5262 2509 37 0 0 chr9 84898383 84898682 -32963945 + L1PA2 LINE L1 5850 6149 -6 1114 127 0 0 chr9 84898682 84898877 -32963750 + AluSx SINE Alu 126 320 0 576 179 153 134 chr9 84898903 84899086 -32963541 - L1MC4 LINE L1 -431 7611 7433 2341 98 0 0 chr9 84899086 84899383 -32963244 + AluSg SINE Alu 1 297 -13 576 179 153 134 chr9 84899383 84899579 -32963048 - L1MC4 LINE L1 -609 7433 7225 2271 98 7 0 chr9 84900345 84900641 -32961986 - AluSx SINE Alu -14 298 1 295 200 13 13 chr9 84900738 84900807 -32961820 - AluSc SINE Alu -5 294 226 2934 88 86 15 chr9 84900807 84901282 -32961345 - LTR61 LTR ERV1 0 595 87 1769 108 0 4 chr9 84901288 84901520 -32961107 - AluSx SINE Alu -81 231 1 25 51 0 0 chr9 84901833 84901872 -32960755 + AT_rich Low_complexity Low_complexity 1 39 0 482 271 128 46 chr9 84902045 84902263 -32960364 - MIR SINE MIR -16 246 11 784 296 158 35 chr9 84902429 84902587 -32960040 + L2 LINE L2 2532 2669 -644 1149 241 82 6 chr9 84902587 84902906 -32959721 - MER2 DNA MER2_type 0 344 2 784 296 158 35 chr9 84902906 84903347 -32959280 + L2 LINE L2 2669 3213 -100 229 167 62 0 chr9 84903384 84903432 -32959195 - AluJo SINE Alu -167 135 85 221 235 0 39 chr9 84904016 84904067 -32958560 + L2 LINE L2 3256 3304 -9 2157 103 0 0 chr9 84905601 84905907 -32956720 + AluSx SINE Alu 1 306 0 310 287 75 0 chr9 84905913 84906007 -32956620 - L1ME3A LINE L1 -30 6140 6040 1663 158 91 0 chr9 84906007 84906292 -32956335 + AluJb SINE Alu 2 312 0 1851 153 24 0 chr9 84906362 84906657 -32955970 - AluSx SINE Alu -10 302 1 422 269 47 31 chr9 84906844 84907037 -32955590 - L1MC5 LINE L1 -476 7485 7290 356 202 97 18 chr9 84907051 84907165 -32955462 - L1MC5 LINE L1 -723 7238 7116 283 254 0 0 chr9 84907165 84907232 -32955395 + MER52A LTR ERV1 1 67 -1688 2657 182 65 137 chr9 84907427 84908881 -32953746 + MER52A LTR ERV1 56 1272 -6 1143 254 84 36 chr9 84908885 84909486 -32953141 - L1MC5 LINE L1 -831 6977 6488 2101 153 31 69 chr9 84911002 84911452 -32951175 + Tigger2a DNA MER2_type 1 433 -1 239 256 202 35 chr9 84911768 84912026 -32950601 + L1ME3A LINE L1 5639 5939 -231 304 209 113 9 chr9 84912085 84912200 -32950427 - L1ME3A LINE L1 -295 5875 5749 769 261 34 25 chr9 84912242 84912480 -32950147 - MIR SINE MIR 0 262 23 2091 105 10 7 chr9 84912645 84912941 -32949686 - AluSp SINE Alu -16 297 1 24 0 0 0 chr9 84913145 84913169 -32949458 + AT_rich Low_complexity Low_complexity 1 24 0 233 330 29 68 chr9 84915425 84915528 -32947099 + MER91A DNA MER1_type 3 101 -95 636 179 0 51 chr9 84917658 84917775 -32944852 - FRAM SINE Alu -45 131 21 417 167 0 0 chr9 84918019 84918091 -32944536 - MER63 DNA MER1_type -319 743 672 28 61 0 0 chr9 84918461 84918510 -32944117 + AT_rich Low_complexity Low_complexity 1 49 0 24 0 0 0 chr9 84918863 84918887 -32943740 + AT_rich Low_complexity Low_complexity 1 24 0 20487 42 5 0 chr9 84918887 84922209 -32940418 - L1PA4 LINE L1 -1 6154 2820 262 289 0 13 chr9 84922791 84922867 -32939760 + MIR3 SINE MIR 129 203 -5 321 265 44 81 chr9 84922945 84923081 -32939546 + MIR3 SINE MIR 37 167 -41 2148 197 43 27 chr9 84923486 84923522 -32939105 - L1MB8 LINE L1 0 6178 6144 2063 99 85 57 chr9 84923522 84923876 -32938751 - THE1B LTR MaLR 0 364 1 2148 197 43 27 chr9 84923876 84924642 -32937985 - L1MB8 LINE L1 -34 6144 5149 2142 110 34 0 chr9 84924642 84924934 -32937693 + AluSx SINE Alu 1 302 -10 2148 197 43 27 chr9 84924934 84925377 -32937250 - L1MB8 LINE L1 -1029 5149 4715 5876 227 47 39 chr9 84925386 84927789 -32934838 + L1PA12 LINE L1 9 3247 -4337 4655 239 51 15 chr9 84927890 84929564 -32933063 - L1M4 LINE L1 -1332 4814 3080 742 214 39 95 chr9 84929565 84929925 -32932702 + L1MC/D LINE L1 5122 5458 -819 1692 139 8 0 chr9 84929925 84930169 -32932458 - AluJb SINE Alu -15 297 52 742 214 39 95 chr9 84930169 84930233 -32932394 + L1MC/D LINE L1 5458 5524 -753 322 220 87 100 chr9 84930270 84930420 -32932207 - L1MB8 LINE L1 -1438 4708 4561 290 352 46 0 chr9 84930878 84930986 -32931641 + L2 LINE L2 3199 3311 -2 197 350 33 0 chr9 84932490 84932550 -32930077 + L2 LINE L2 3119 3180 -92 274 295 72 31 chr9 84933056 84933249 -32929378 - L1ME LINE L1 -5867 203 3 391 174 58 0 chr9 84933277 84933363 -32929264 - L1MB5 LINE L1 0 6174 6084 540 230 96 22 chr9 84934007 84934185 -32928442 + MIR SINE MIR 65 255 -7 801 296 97 6 chr9 84937283 84937594 -32925033 - L2 LINE L2 -5 3308 2970 192 40 0 0 chr9 84937659 84937684 -32924943 + (TTTTTA)n Simple_repeat Simple_repeat 4 28 0 40574 34 22 1 chr9 84937688 84943707 -32918920 - L1PA2 LINE L1 -5 6150 4 1775 197 66 50 chr9 84943773 84944382 -32918245 - L1PA15 LINE L1 -10 6154 5462 2192 94 28 0 chr9 84944382 84944670 -32917957 - AluSx SINE Alu -12 300 5 1775 197 66 50 chr9 84944670 84944814 -32917813 - L1PA15 LINE L1 -702 5462 5322 2010 125 0 27 chr9 84944835 84945131 -32917496 - AluSx SINE Alu -16 296 9 263 91 0 23 chr9 84945254 84945298 -32917329 + (CATA)n Simple_repeat Simple_repeat 2 44 0 2080 119 91 0 chr9 84945352 84945704 -32916923 - L1PA16 LINE L1 -14 6152 5769 39662 60 2 2 chr9 84945704 84951839 -32910788 - L1PA5 LINE L1 -6 6148 11 702 142 0 0 chr9 84951848 84951982 -32910645 - L1PA15 LINE L1 -841 5305 5172 6696 195 11 9 chr9 84951993 84953482 -32909145 - L1PA15 LINE L1 -1074 5072 3581 2186 168 111 13 chr9 84953482 84954943 -32907684 - SATR1 Satellite Satellite 0 1604 1 236 321 0 0 chr9 85054945 85055026 -32807601 + HAL1b LINE L1 558 638 -710 1840 135 27 3 chr9 85055163 85055460 -32807167 + L1PB1 LINE L1 5397 5700 -451 15141 33 0 1 chr9 85055467 85058061 -32804566 - L1PA3 LINE L1 0 6155 3563 5745 31 0 0 chr9 85058061 85058772 -32803855 + L1PA3 LINE L1 2850 3560 -2586 3142 93 5 0 chr9 85058778 85059208 -32803419 + L1PB1 LINE L1 5696 6127 -24 1800 122 122 15 chr9 85061683 85062020 -32800607 + THE1C LTR MaLR 3 375 0 186 200 0 0 chr9 85062188 85062223 -32800404 - L2 LINE L2 0 3272 3238 341 280 76 18 chr9 85062600 85062825 -32799802 - L1M4 LINE L1 -2180 3966 3729 304 293 77 93 chr9 85062978 85063289 -32799338 - L1M4 LINE L1 -2579 3567 3262 3928 211 64 37 chr9 85063312 85063432 -32799195 - L1MB8 LINE L1 0 6178 6063 1911 63 66 56 chr9 85063432 85063719 -32798908 - AluY SINE Alu -16 295 6 3928 211 64 37 chr9 85063719 85065684 -32796943 - L1MB8 LINE L1 -115 6063 4034 2116 84 42 3 chr9 85065684 85065970 -32796657 - AluY SINE Alu -10 301 5 3928 211 64 37 chr9 85065970 85066055 -32796572 - L1MB8 LINE L1 -2144 4034 3953 366 299 138 49 chr9 85066081 85066266 -32796361 - L1MB8 LINE L1 -3429 2717 2493 2889 50 22 35 chr9 85066266 85066666 -32795961 - L1PA7 LINE L1 0 6154 5760 366 299 138 49 chr9 85066666 85066784 -32795843 - L1MB8 LINE L1 -3653 2493 2387 213 123 46 0 chr9 85067248 85067313 -32795314 + (TA)n Simple_repeat Simple_repeat 1 68 0 287 233 17 44 chr9 85067341 85067521 -32795106 + (TAAA)n Simple_repeat Simple_repeat 4 178 0 * 330 253 31 0 chr9 85067394 85067556 -32795071 + (TA)n Simple_repeat Simple_repeat 2 168 0 229 313 116 23 chr9 85067617 85067876 -32794751 - HAL1b LINE L1 -544 804 522 236 357 76 24 chr9 85067988 85068237 -32794390 - HAL1b LINE L1 -971 377 116 1673 119 4 4 chr9 85068596 85068839 -32793788 - AluSx SINE Alu -69 243 1 303 49 0 0 chr9 85068846 85068887 -32793740 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 2714 13 0 0 chr9 85068887 85069197 -32793430 - L1PA2 LINE L1 -18 6137 5828 6125 11 0 0 chr9 85069197 85069900 -32792727 + L1P LINE L1 3995 4697 -1449 227 206 0 16 chr9 85070208 85070271 -32792356 + (TCTG)n Simple_repeat Simple_repeat 4 65 0 331 280 53 40 chr9 85070915 85071065 -32791562 + MIR SINE MIR 45 197 -11 185 222 0 44 chr9 85071039 85071084 -32791543 + L2 LINE L2 3267 3309 -4 * 2277 88 0 0 chr9 85071405 85071700 -32790927 - AluY SINE Alu -14 297 3 336 258 0 0 chr9 85071825 85071914 -32790713 - L1MC4 LINE L1 -1340 6702 6614 243 0 0 0 chr9 85071944 85071971 -32790656 + (CA)n Simple_repeat Simple_repeat 2 28 0 188 361 0 0 chr9 85072330 85072402 -32790225 + MIR SINE MIR 82 153 -109 245 29 29 0 chr9 85073100 85073134 -32789493 + (TG)n Simple_repeat Simple_repeat 2 36 0 191 365 47 0 chr9 85073247 85073332 -32789295 + MIR SINE MIR 168 256 -6 21 0 0 0 chr9 85073581 85073602 -32789025 + AT_rich Low_complexity Low_complexity 1 21 0 956 139 35 0 chr9 85073749 85073921 -32788706 - L1MA7 LINE L1 -703 5609 5432 2318 185 143 19 chr9 85073924 85074496 -32788131 + L1MA7 LINE L1 5624 6266 -25 416 259 43 9 chr9 85074497 85074613 -32788014 + MIR SINE MIR 137 256 -6 218 267 40 13 chr9 85075392 85075467 -32787160 - MER5A DNA MER1_type -77 112 36 292 193 60 24 chr9 85076177 85076260 -32786367 + LTR67 LTR ERVL 456 541 -16 334 278 0 11 chr9 85076604 85076694 -32785933 - L1MC4 LINE L1 -1339 6703 6615 230 159 16 32 chr9 85076704 85076767 -32785860 + LTR66 LTR ERVL 399 460 -150 199 325 13 0 chr9 85076907 85076984 -32785643 - MIR SINE MIR -2 260 183 204 200 0 0 chr9 85078488 85078538 -32784089 + A-rich Low_complexity Low_complexity 1 50 0 1524 174 79 9 chr9 85078609 85078953 -32783674 + MLT1A1 LTR MaLR 1 361 -4 209 361 112 37 chr9 85078974 85079270 -32783357 + L3 LINE CR1 644 961 -616 264 305 181 44 chr9 85079445 85079694 -32782933 + L3 LINE CR1 1100 1382 -195 1070 266 108 36 chr9 85079702 85080145 -32782482 + MLT1J LTR MaLR 1 475 -36 208 291 69 90 chr9 85080402 85080591 -32782036 + L3 LINE CR1 1155 1339 -238 263 267 35 35 chr9 85081476 85081562 -32781065 - L2 LINE L2 0 3272 3187 199 277 394 0 chr9 85081564 85081658 -32780969 - L2 LINE L2 0 3272 3142 623 266 30 20 chr9 85081690 85081889 -32780738 - MIR SINE MIR 0 262 62 559 214 156 7 chr9 85081954 85082108 -32780519 - MER97b DNA MER1_type? -874 179 3 259 326 123 55 chr9 85082177 85082585 -32780042 - L2 LINE L2 -181 3091 2652 198 191 0 0 chr9 85083106 85083153 -32779474 + CT-rich Low_complexity Low_complexity 2 48 0 200 222 0 16 chr9 85083250 85083313 -32779314 + GA-rich Low_complexity Low_complexity 4 65 0 353 339 73 49 chr9 85083608 85084033 -32778594 - L2 LINE L2 -337 2977 2543 1799 184 42 28 chr9 85084095 85084454 -32778173 + MLT1A1 LTR MaLR 1 364 -1 306 368 54 42 chr9 85084543 85084709 -32777918 + MIR SINE MIR 8 175 -87 386 263 0 0 chr9 85084757 85084837 -32777790 + MIR SINE MIR 33 112 -150 217 376 29 0 chr9 85085195 85085277 -32777350 + MIR SINE MIR 37 120 -88 391 279 57 33 chr9 85085593 85085715 -32776912 + MIR SINE MIR 12 136 -126 213 273 0 0 chr9 85085809 85085864 -32776763 + CT-rich Low_complexity Low_complexity 2 56 0 198 0 0 0 chr9 85086605 85086627 -32776000 + (T)n Simple_repeat Simple_repeat 1 22 0 196 348 119 46 chr9 85086629 85086931 -32775696 + L2 LINE L2 2305 2628 -686 2702 191 2 41 chr9 85086931 85087464 -32775163 + MLT2B2 LTR ERVL 1 512 -3 194 214 24 0 chr9 85087837 85087879 -32774748 + MIR3 SINE MIR 163 205 -3 200 200 0 0 chr9 85087905 85087940 -32774687 + CT-rich Low_complexity Low_complexity 3 37 0 929 232 186 15 chr9 85088804 85089196 -32773431 + LTR50 LTR ERVL 1 459 -336 652 177 168 10 chr9 85089222 85089425 -32773202 + LTR50 LTR ERVL 530 764 -31 313 294 46 66 chr9 85089746 85089943 -32772684 - L1M4 LINE L1 -745 5401 5209 341 340 69 20 chr9 85089977 85090180 -32772447 - L1M4 LINE L1 -1013 5133 4921 752 248 41 46 chr9 85090186 85090588 -32772039 - MLT1A1 LTR MaLR -6 390 1 296 325 90 4 chr9 85090591 85090846 -32771781 - L1M4 LINE L1 -1231 4915 4639 4878 162 60 34 chr9 85091223 85092266 -32770361 + MER11C LTR ERVK 1 1071 0 877 275 140 42 chr9 85092269 85092407 -32770220 - L1M4 LINE L1 -1949 4197 4074 2281 87 42 0 chr9 85092407 85092696 -32769931 + AluY SINE Alu 1 301 -10 877 275 140 42 chr9 85092696 85092790 -32769837 - L1M4 LINE L1 -2072 4074 3991 218 81 27 0 chr9 85092790 85092827 -32769800 + (TA)n Simple_repeat Simple_repeat 2 39 0 189 0 0 0 chr9 85092827 85092848 -32769779 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 877 275 140 42 chr9 85092848 85093044 -32769583 - L1M4 LINE L1 -2155 3991 3816 636 283 31 23 chr9 85093044 85093302 -32769325 + MIR SINE MIR 3 262 0 877 275 140 42 chr9 85093302 85094110 -32768517 - L1M4 LINE L1 -2330 3816 2836 1760 171 3 0 chr9 85094138 85094488 -32768139 - L1PA12 LINE L1 -1500 4646 4296 6123 84 32 9 chr9 85094489 85095995 -32766632 + L1PA12 LINE L1 4675 6168 0 337 292 119 37 chr9 85098045 85098398 -32764229 - L1M4 LINE L1 -3315 2831 2450 229 263 0 12 chr9 85098474 85098554 -32764073 - HAL1 LINE L1 -954 1553 1475 3109 108 11 0 chr9 85098584 85099036 -32763591 - L1PA10 LINE L1 -1 6167 5711 521 316 102 41 chr9 85099131 85099590 -32763037 - HAL1 LINE L1 -1070 1437 951 28 0 0 0 chr9 85099602 85099630 -32762997 + AT_rich Low_complexity Low_complexity 1 28 0 527 187 183 57 chr9 85099930 85100160 -32762467 - MER112 DNA MER1_type -1 259 1 368 251 42 21 chr9 85100643 85100834 -32761793 - L1ME4a LINE L1 -201 5920 5726 3227 80 0 5 chr9 85101536 85101974 -32760653 + MLT2A1 LTR ERVL 9 444 0 265 331 80 26 chr9 85102371 85102522 -32760105 + L2 LINE L2 3155 3313 0 689 311 84 80 chr9 85103456 85103801 -32758826 + L2 LINE L2 1804 2146 -1168 2260 121 0 3 chr9 85103801 85104114 -32758513 - AluSq SINE Alu -1 312 1 689 311 84 80 chr9 85104114 85104565 -32758062 + L2 LINE L2 2146 2603 -711 1436 208 3 22 chr9 85104644 85104957 -32757670 + AluJb SINE Alu 1 307 -5 1877 108 26 65 chr9 85105140 85105447 -32757180 - AluSg SINE Alu -15 295 1 2192 234 45 18 chr9 85105791 85106341 -32756286 + MLT1F1 LTR MaLR 3 567 0 231 91 0 0 chr9 85106401 85106434 -32756193 + MLT1F LTR MaLR 510 542 0 691 258 52 65 chr9 85106762 85107010 -32755617 + MIR SINE MIR 18 262 0 215 267 11 100 chr9 85107001 85107091 -32755536 + L2 LINE L2 3186 3267 -5 * 380 182 0 0 chr9 85107387 85107453 -32755174 - L2 LINE L2 -8 3305 3240 309 276 67 37 chr9 85107458 85107592 -32755035 - L2 LINE L2 -1 3312 3175 2038 162 37 36 chr9 85107605 85108156 -32754471 + MLT2A2 LTR ERVL 3 554 0 859 140 7 22 chr9 85108395 85108531 -32754096 + AluJo SINE Alu 1 134 -178 245 263 220 35 chr9 85109177 85109409 -32753218 + L3b LINE CR1 1102 1376 -207 313 289 31 8 chr9 85110008 85110136 -32752491 + L1ME4a LINE L1 5991 6121 0 264 320 151 52 chr9 85110247 85110538 -32752089 - L2 LINE L2 -34 3238 2919 202 284 182 11 chr9 85111039 85111127 -32751500 + MIR3 SINE MIR 90 192 -16 486 242 181 6 chr9 85113000 85113182 -32749445 - MIR SINE MIR 0 262 49 236 291 243 19 chr9 85113774 85113980 -32748647 - MIR SINE MIR -1 261 10 279 226 16 0 chr9 85114761 85114823 -32747804 - MIR SINE MIR -108 154 92 492 257 67 60 chr9 85114871 85115081 -32747546 - MIR SINE MIR -1 261 54 707 256 41 31 chr9 85115088 85115183 -32747444 + MIR SINE MIR 35 128 -134 2247 124 34 6 chr9 85115183 85115537 -32747090 + THE1B LTR MaLR 1 364 0 707 256 41 31 chr9 85115537 85115636 -32746991 + MIR SINE MIR 128 231 -31 345 47 0 0 chr9 85116115 85116158 -32746469 + (CA)n Simple_repeat Simple_repeat 2 44 0 2681 159 65 4 chr9 85116270 85116793 -32745834 + L1PB4 LINE L1 5593 6147 -9 252 279 114 45 chr9 85117872 85118048 -32744579 + MIR SINE MIR 28 211 -51 527 264 39 79 chr9 85118478 85118656 -32743971 + MIR SINE MIR 27 197 -65 1399 195 8 16 chr9 85120412 85120663 -32741964 - AluJb SINE Alu -62 250 2 357 253 0 0 chr9 85120699 85120774 -32741853 + MER21B LTR ERV1 20 94 -769 1713 208 137 13 chr9 85120775 85121228 -32741399 + MER21B LTR ERV1 48 556 -307 527 240 29 13 chr9 85121418 85121634 -32740993 + MER21B LTR ERV1 563 852 -11 691 316 77 15 chr9 85121638 85121964 -32740663 + L2 LINE L2 2621 2966 -348 299 276 95 17 chr9 85122015 85122131 -32740496 + MER94 DNA DNA 10 134 0 865 279 50 50 chr9 85122131 85122468 -32740159 + L2 LINE L2 2977 3313 0 266 290 174 36 chr9 85123134 85123272 -32739355 + MIR3 SINE MIR 31 187 -21 233 351 0 0 chr9 85123301 85123375 -32739252 - L2 LINE L2 -10 3303 3230 433 292 110 5 chr9 85123723 85123932 -32738695 - MLT1L LTR MaLR -2 613 383 396 308 87 34 chr9 85123934 85124079 -32738548 - MLT1J1 LTR MaLR 0 450 314 7432 37 0 0 chr9 85124079 85125053 -32737574 - L1PA5 LINE L1 -3 6151 5174 396 308 87 34 chr9 85125053 85125335 -32737292 - MLT1J1 LTR MaLR -136 314 1 1045 177 33 27 chr9 85125619 85126011 -32736616 - LTR47B LTR ERVL 0 443 1 313 228 0 25 chr9 85126045 85126124 -32736503 - MLT1L LTR MaLR -536 79 3 227 261 125 11 chr9 85126125 85126213 -32736414 - L2 LINE L2 -559 2755 2658 357 235 176 24 chr9 85126892 85127062 -32735565 + MLT1J1 LTR MaLR 83 278 -168 526 234 19 16 chr9 85128015 85128191 -32734436 + MLT1E LTR MaLR 1 178 -389 569 270 112 19 chr9 85128667 85128882 -32733745 - MIR SINE MIR -16 246 12 518 332 156 17 chr9 85129020 85129502 -32733125 - L2 LINE L2 -339 2975 2427 1003 265 56 4 chr9 85130807 85131056 -32731571 + MIR SINE MIR 1 262 0 260 229 33 0 chr9 85131509 85131570 -32731057 - MIR SINE MIR -112 150 88 2073 134 3 0 chr9 85131603 85131901 -32730726 + AluSp SINE Alu 1 299 -14 1080 282 138 8 chr9 85133259 85133860 -32728767 + L2 LINE L2 2617 3311 -2 356 157 0 130 chr9 85134058 85134161 -32728466 - L1MD3 LINE L1 -12 7983 7894 3369 164 49 3 chr9 85134161 85134796 -32727831 - L1MA10 LINE L1 -2 6332 5669 180 0 0 0 chr9 85135699 85135719 -32726908 + (A)n Simple_repeat Simple_repeat 1 20 0 440 297 65 13 chr9 85136333 85136488 -32726139 + MIR SINE MIR 29 191 -71 2304 92 10 0 chr9 85136796 85137100 -32725527 + AluY SINE Alu 1 307 -4 402 250 62 56 chr9 85137118 85137262 -32725365 - MIR SINE MIR -70 192 48 446 349 34 0 chr9 85138436 85138585 -32724042 - MIR SINE MIR -62 200 47 339 270 104 72 chr9 85140423 85140645 -32721982 - L2 LINE L2 -2 3311 3083 361 314 15 29 chr9 85140807 85140944 -32721683 - L2 LINE L2 0 3313 3179 220 323 77 26 chr9 85141076 85141271 -32721356 - L2 LINE L2 -343 2971 2767 869 252 29 63 chr9 85141791 85142140 -32720487 - MER46C DNA MER2_type -1 337 1 365 247 31 0 chr9 85142240 85142337 -32720290 + MER5A DNA MER1_type 89 188 -1 244 250 0 0 chr9 85142340 85142384 -32720243 + L3b LINE CR1 1406 1449 -134 547 310 35 20 chr9 85142984 85143187 -32719440 + MIR SINE MIR 16 221 -41 235 311 156 16 chr9 85143271 85143393 -32719234 + L2 LINE L2 3122 3260 -12 519 175 146 12 chr9 85143432 85143603 -32719024 + MER63 DNA MER1_type 2 195 -866 738 218 29 29 chr9 85143616 85143823 -32718804 + MER58B DNA MER1_type 1 340 -1 315 326 0 0 chr9 85143892 85143981 -32718646 - MER58 DNA MER1_type -2331 89 1 1543 209 106 3 chr9 85143981 85144350 -32718277 + MER63 DNA MER1_type 648 1054 -6 19276 96 21 22 chr9 85145970 85149730 -32712897 - L1PA7 LINE L1 -17 6137 2381 1226 112 0 16 chr9 85149733 85149921 -32712706 + L1PA7 LINE L1 2175 2359 -3787 26 0 0 0 chr9 85149998 85150024 -32712603 + AT_rich Low_complexity Low_complexity 1 26 0 266 303 197 23 chr9 85150074 85150206 -32712421 - L2 LINE L2 -2 3270 3116 324 319 106 37 chr9 85150326 85150599 -32712028 - L1MC4a LINE L1 -1736 6072 5781 349 246 22 8 chr9 85150613 85150747 -32711880 + (TA)n Simple_repeat Simple_repeat 1 136 0 526 349 33 18 chr9 85150839 85151232 -32711395 - L1ME3 LINE L1 -267 5895 5497 2342 98 48 8 chr9 85151333 85151690 -32710937 + L1PA11 LINE L1 5804 6174 0 206 238 50 0 chr9 85152185 85152286 -32710341 + (TATAA)n Simple_repeat Simple_repeat 5 110 0 261 288 45 9 chr9 85152918 85153029 -32709598 + L1ME LINE L1 5692 5806 -315 188 382 15 0 chr9 85153370 85153438 -32709189 + L2 LINE L2 3243 3311 -2 210 285 0 19 chr9 85153948 85154106 -32708521 + CT-rich Low_complexity Low_complexity 5 159 0 231 231 240 16 chr9 85154332 85154453 -32708174 + MIR SINE MIR 109 256 -6 242 234 172 0 chr9 85154968 85155032 -32707595 - MER5C DNA MER1_type -249 75 1 190 208 113 0 chr9 85155032 85155083 -32707544 - L2 LINE L2 -125 3188 3132 373 314 36 15 chr9 85155283 85155420 -32707207 + L2 LINE L2 3124 3263 -9 213 271 21 0 chr9 85155414 85155462 -32707165 - L2 LINE L2 -83 3189 3141 * 552 196 255 16 chr9 85155469 85155653 -32706974 - MER5C DNA MER1_type 0 324 97 204 67 0 0 chr9 85155654 85155684 -32706943 + (TG)n Simple_repeat Simple_repeat 2 31 0 213 194 0 0 chr9 85155689 85155725 -32706902 - MER5C DNA MER1_type -277 47 12 2096 286 79 27 chr9 85155742 85156780 -32705847 - L2 LINE L2 -103 3210 2060 3175 82 18 0 chr9 85156964 85157402 -32705225 - L1PA8 LINE L1 0 6172 5727 521 327 69 26 chr9 85158025 85158371 -32704256 + L2 LINE L2 2456 2816 -498 195 408 51 0 chr9 85158370 85158468 -32704159 - L2 LINE L2 -58 3214 3112 * 260 239 97 45 chr9 85159428 85159562 -32703065 - MER103 DNA DNA -25 141 1 226 169 42 14 chr9 85159660 85159731 -32702896 + (TTA)n Simple_repeat Simple_repeat 3 75 0 278 294 81 73 chr9 85159845 85159981 -32702646 + L2 LINE L2 3136 3272 0 225 310 14 0 chr9 85160701 85160772 -32701855 + CT-rich Low_complexity Low_complexity 5 76 0 350 250 179 29 chr9 85161364 85161504 -32701123 - L1MC4a LINE L1 -1860 5948 5788 2465 213 82 20 chr9 85161625 85162328 -32700299 - L1ME2 LINE L1 -32 6132 5386 42596 36 21 1 chr9 85162390 85168414 -32694213 - L1PA2 LINE L1 0 6155 4 592 235 67 34 chr9 85168423 85168691 -32693936 - L1ME2 LINE L1 -748 5398 5122 5235 129 47 9 chr9 85168729 85169600 -32693027 - L1PA16 LINE L1 -9 6157 5254 2010 205 26 0 chr9 85169612 85170042 -32692585 - L1 LINE L1 -1063 5083 4643 14614 157 23 11 chr9 85170065 85171881 -32690746 - L1MA3 LINE L1 0 7724 5932 2566 57 0 0 chr9 85171881 85172179 -32690448 - AluY SINE Alu -13 298 1 14614 157 23 11 chr9 85172179 85172367 -32690260 - L1MA3 LINE L1 -1792 5932 5748 2319 99 0 0 chr9 85172367 85172671 -32689956 - AluY SINE Alu -7 304 1 14614 157 23 11 chr9 85172671 85176477 -32686150 - L1MA3 LINE L1 -1976 5748 1843 282 160 0 0 chr9 85176617 85176667 -32685960 + (TTG)n Simple_repeat Simple_repeat 2 51 0 1890 144 0 0 chr9 85176677 85176947 -32685680 - AluSc SINE Alu -39 270 1 5344 225 14 12 chr9 85176994 85178360 -32684267 - L1 LINE L1 -1688 4458 3090 1530 260 77 8 chr9 85178359 85178971 -32683656 - L1ME2 LINE L1 -1050 5096 4443 * 30375 97 41 42 chr9 85179003 85185143 -32677484 - L1PA7 LINE L1 -3 6151 24 440 308 96 34 chr9 85185158 85185450 -32677177 - L1ME LINE L1 -594 5576 5267 195 42 0 0 chr9 85185811 85185835 -32676792 + (CA)n Simple_repeat Simple_repeat 1 24 0 22 35 0 0 chr9 85185835 85185864 -32676763 + AT_rich Low_complexity Low_complexity 1 29 0 475 197 60 0 chr9 85186477 85186594 -32676033 - L1ME3A LINE L1 -10 6160 6037 542 218 7 21 chr9 85186641 85186783 -32675844 - L1MD3 LINE L1 -18 7977 7838 * 2523 209 62 45 chr9 85186755 85187556 -32675071 + L1MC4a LINE L1 6846 7660 -148 27 29 0 0 chr9 85187556 85187590 -32675037 + AT_rich Low_complexity Low_complexity 1 34 0 392 263 40 46 chr9 85187664 85187816 -32674811 - MIR SINE MIR -104 158 8 22 88 0 0 chr9 85188419 85188476 -32674151 + AT_rich Low_complexity Low_complexity 1 57 0 1763 151 119 0 chr9 85188600 85188911 -32673716 + MER7A DNA MER2_type 1 346 0 326 338 0 0 chr9 85190491 85190568 -32672059 - L3 LINE CR1 -84 1493 1417 260 315 117 40 chr9 85190694 85190916 -32671711 - L3 LINE CR1 -203 1374 1136 229 371 26 7 chr9 85191472 85191623 -32671004 + L2 LINE L2 3149 3302 -11 490 267 7 7 chr9 85192408 85192543 -32670084 - LTR16C LTR ERVL 0 491 357 484 240 0 29 chr9 85193133 85193237 -32669390 + MIR SINE MIR 2 102 -160 256 246 0 0 chr9 85193235 85193292 -32669335 - MIR SINE MIR -127 135 79 * 285 245 0 0 chr9 85193332 85193385 -32669242 - MIR SINE MIR -158 104 52 196 292 169 0 chr9 85193591 85193680 -32668947 - MIR SINE MIR -2 260 157 254 228 18 0 chr9 85193685 85193742 -32668885 - LTR16C LTR ERVL 0 491 434 345 154 62 0 chr9 85193742 85193807 -32668820 + Tigger2 DNA MER2_type 1 69 -2649 * 2057 168 68 2 chr9 85193805 85194217 -32668410 + Tigger2 DNA MER2_type 2280 2718 0 787 310 70 6 chr9 85194217 85194562 -32668065 - LTR16C LTR ERVL -51 440 73 436 282 16 69 chr9 85194575 85194763 -32667864 - MIR3 SINE MIR -28 180 3 1917 168 48 65 chr9 85194914 85195389 -32667238 + MLT1C LTR MaLR 1 467 0 419 285 177 6 chr9 85196962 85197120 -32665507 - MER5A DNA MER1_type -1 188 4 258 250 67 0 chr9 85197237 85197297 -32665330 - L2 LINE L2 0 3313 3250 252 340 47 0 chr9 85199235 85199341 -32663286 + L2 LINE L2 1978 2088 -1226 * 416 215 93 19 chr9 85199339 85199446 -32663181 + L2 LINE L2 3197 3311 -2 509 314 44 12 chr9 85200762 85201014 -32661613 - MIR SINE MIR -1 261 2 404 280 50 0 chr9 85201150 85201250 -32661377 - MIR SINE MIR -2 260 156 242 325 26 0 chr9 85201361 85201438 -32661189 - MIR SINE MIR -96 112 34 188 0 74 0 chr9 85203287 85203314 -32659313 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 7108 46 7 0 chr9 85203317 85204898 -32657729 - L1PA5 LINE L1 -9 6145 4554 6740 37 1 0 chr9 85204899 85205755 -32656872 + L1P LINE L1 3585 4441 -1705 442 314 58 31 chr9 85205763 85205954 -32656673 + L2 LINE L2 3118 3313 0 23 0 0 0 chr9 85206081 85206104 -32656523 + AT_rich Low_complexity Low_complexity 1 23 0 580 283 48 6 chr9 85206881 85207047 -32655580 - MIR SINE MIR -70 192 20 5919 104 18 2 chr9 85207215 85208544 -32654083 + L1PA13 LINE L1 4801 6157 -6 2409 59 0 0 chr9 85209435 85209740 -32652887 + L1PA5 LINE L1 5850 6154 0 360 333 101 19 chr9 85209961 85210120 -32652507 + MIR SINE MIR 2 173 -89 267 317 29 0 chr9 85210641 85210745 -32651882 + MIR3 SINE MIR 15 121 -87 596 223 14 22 chr9 85211097 85211236 -32651391 - MIR SINE MIR -18 244 107 425 321 98 5 chr9 85211921 85212105 -32650522 - MIR SINE MIR -15 247 47 475 330 62 48 chr9 85212613 85212971 -32649656 + L2 LINE L2 2503 2865 -449 220 384 33 33 chr9 85213023 85213174 -32649453 + L2 LINE L2 2909 3059 -213 * 442 299 100 46 chr9 85213171 85213432 -32649195 + L3 LINE CR1 1250 1524 -53 269 304 0 0 chr9 85213525 85213604 -32649023 + CT-rich Low_complexity Low_complexity 2 80 0 451 269 105 18 chr9 85214096 85214267 -32648360 - L2 LINE L2 0 3313 3128 949 280 10 29 chr9 85214282 85214486 -32648141 - MLT1I LTR MaLR -18 391 194 2530 59 0 0 chr9 85214486 85214790 -32647837 + AluY SINE Alu 1 304 -7 949 280 10 29 chr9 85214790 85214896 -32647731 - MLT1I LTR MaLR -215 194 87 415 316 62 26 chr9 85215008 85215201 -32647426 - L2 LINE L2 -301 3012 2813 890 295 64 24 chr9 85215221 85215519 -32647108 - L2 LINE L2 -18 3295 2986 2038 161 0 7 chr9 85215543 85215848 -32646779 + AluSx SINE Alu 1 303 -9 2120 265 80 80 chr9 85215871 85216997 -32645630 - L2 LINE L2 -539 2775 1650 190 286 98 80 chr9 85218269 85218381 -32644246 + MIR SINE MIR 34 147 -61 711 162 26 96 chr9 85218971 85219200 -32643427 + MLT1D LTR MaLR 2 214 -291 1871 120 44 0 chr9 85219221 85219495 -32643132 + AluSx SINE Alu 1 286 -26 1159 221 15 7 chr9 85219539 85219808 -32642819 + MLT1D LTR MaLR 247 501 -4 335 195 182 0 chr9 85220048 85220125 -32642502 + FRAM SINE Alu 72 162 -4 532 328 115 36 chr9 85220775 85221245 -32641382 + HAL1 LINE L1 1050 1556 -951 424 294 18 12 chr9 85221511 85221674 -32640953 + MLT1I LTR MaLR 19 182 -227 658 157 17 39 chr9 85221724 85222138 -32640489 + CT-rich Low_complexity Low_complexity 1 405 0 468 313 54 6 chr9 85222376 85222542 -32640085 + MIR SINE MIR 11 184 -78 336 133 0 0 chr9 85222558 85222618 -32640009 + (CATA)n Simple_repeat Simple_repeat 2 61 0 274 280 141 55 chr9 85222909 85223135 -32639492 + MIR SINE MIR 15 255 -7 590 59 20 20 chr9 85223547 85223649 -32638978 + (TCTA)n Simple_repeat Simple_repeat 1 102 0 1877 165 29 14 chr9 85223953 85224304 -32638323 + MLT1A1 LTR MaLR 10 365 0 579 85 0 75 chr9 85224652 85224746 -32637881 - FLAM_A SINE Alu -35 107 21 473 218 15 8 chr9 85225145 85225278 -32637349 - L1MC4 LINE L1 -1 8041 7908 1401 106 5 5 chr9 85225431 85225619 -32637008 - AluSg/x SINE Alu -20 292 105 1198 266 79 61 chr9 85225619 85227198 -32635429 - L1MDa LINE L1 -3671 2409 798 739 274 120 48 chr9 85227317 85227875 -32634752 - L1MDa LINE L1 -5471 599 2 298 316 86 6 chr9 85227965 85228139 -32634488 - MIR SINE MIR -1 261 74 227 313 0 0 chr9 85229669 85229736 -32632891 - MER63 DNA MER1_type 0 1061 995 * 266 241 0 0 chr9 85229733 85229787 -32632840 - MER63 DNA MER1_type -312 749 696 495 185 10 67 chr9 85231033 85231233 -32631394 + AluJ SINE Alu 54 290 -22 470 271 154 0 chr9 85231508 85231696 -32630931 - LTR33A LTR ERVL 0 523 307 270 234 0 0 chr9 85231695 85231742 -32630885 - LTR33 LTR ERVL -360 161 115 * 382 245 49 0 chr9 85232323 85232425 -32630202 - MIR SINE MIR -81 181 75 210 300 1 110 chr9 85232695 85232813 -32629814 - MIR SINE MIR -25 183 76 714 320 113 27 chr9 85233323 85233767 -32628860 + L2 LINE L2 2832 3313 0 337 365 85 0 chr9 85233767 85233967 -32628660 + L2 LINE L2 2542 2758 -556 2001 199 23 56 chr9 85234083 85234605 -32628022 - MLT1D LTR MaLR 0 505 1 563 208 0 110 chr9 85235202 85235280 -32627347 - MLT1D LTR MaLR -113 392 338 2369 68 7 3 chr9 85235280 85235590 -32627037 - AluY SINE Alu 0 311 1 563 208 0 110 chr9 85235590 85235665 -32626962 - MLT1D LTR MaLR -167 338 256 303 308 60 8 chr9 85235887 85236004 -32626623 + MIR SINE MIR 117 239 -23 2544 152 34 0 chr9 85237804 85238218 -32624409 + MSTC LTR MaLR 1 428 0 905 113 23 17 chr9 85238321 85238498 -32624129 + CT-rich Low_complexity Low_complexity 3 180 0 417 121 0 0 chr9 85238481 85238564 -32624063 + (CTG)n Simple_repeat Simple_repeat 2 84 0 * 261 139 0 0 chr9 85238718 85238761 -32623866 + (TCC)n Simple_repeat Simple_repeat 2 44 0 2044 97 19 0 chr9 85238767 85239036 -32623591 - AluSp SINE Alu -39 274 1 1128 189 30 0 chr9 85239038 85239239 -32623388 - MSTC LTR MaLR -221 207 1 2058 82 41 0 chr9 85239433 85239723 -32622904 - AluSg SINE Alu 0 301 1 186 349 15 15 chr9 85240191 85240257 -32622370 - L2 LINE L2 -16 3256 3191 630 264 3 113 chr9 85240265 85240557 -32622070 - MIR SINE MIR 0 262 3 642 264 0 39 chr9 85240676 85240884 -32621743 + L1MEc LINE L1 1629 1828 -4568 467 125 0 0 chr9 85241055 85241135 -32621492 - L1MA8 LINE L1 -27 6264 6185 489 168 9 56 chr9 85241154 85241261 -32621366 - L1PA16 LINE L1 -8 6158 6057 182 200 0 73 chr9 85241427 85241482 -32621145 + MER5A DNA MER1_type 34 84 -105 276 134 0 20 chr9 85241757 85241807 -32620820 - LTR16A1 LTR ERVL 0 457 416 1404 257 46 22 chr9 85241910 85242556 -32620071 - L1MEc LINE L1 -4106 2290 1629 24604 177 51 42 chr9 85242603 85244504 -32618123 - L1ME1 LINE L1 -8 6158 4277 2074 136 0 7 chr9 85244504 85244805 -32617822 - AluSx SINE Alu -13 299 1 24604 177 51 42 chr9 85244805 85245894 -32616733 - L1ME1 LINE L1 -1889 4277 3200 7287 44 0 0 chr9 85245894 85246921 -32615706 - L1PA5 LINE L1 -1 6153 5128 24604 177 51 42 chr9 85246921 85250077 -32612550 - L1ME1 LINE L1 -2966 3200 11 618 231 57 69 chr9 85250083 85250428 -32612199 - L1MEc LINE L1 -3035 3347 3006 2808 7 0 0 chr9 85250428 85250731 -32611896 + AluYa5 SINE Alu 1 303 -8 618 231 57 69 chr9 85250731 85250804 -32611823 - L1MEc LINE L1 -3376 3006 2934 370 209 10 29 chr9 85250821 85250940 -32611687 - L1M4 LINE L1 -5010 1270 1159 1749 184 12 12 chr9 85251170 85251501 -32611126 + MER44D DNA MER2_type 1 601 -8 28 0 0 0 chr9 85251989 85252017 -32610610 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr9 85252067 85252092 -32610535 + AT_rich Low_complexity Low_complexity 1 25 0 27 29 0 0 chr9 85252158 85252192 -32610435 + AT_rich Low_complexity Low_complexity 1 34 0 24 67 0 0 chr9 85252597 85252642 -32609985 + AT_rich Low_complexity Low_complexity 1 45 0 225 316 11 0 chr9 85253218 85253313 -32609314 + (TGGA)n Simple_repeat Simple_repeat 4 99 0 230 347 98 19 chr9 85253768 85254033 -32608594 - L1MC/D LINE L1 -2171 5637 5352 726 271 30 87 chr9 85254067 85254595 -32608032 - HAL1 LINE L1 -4 2503 2006 4893 146 26 43 chr9 85254607 85255420 -32607207 - L1PA15 LINE L1 -1 6164 5388 2154 99 0 0 chr9 85255420 85255692 -32606935 - AluSq SINE Alu -41 272 1 4893 146 26 43 chr9 85255692 85256184 -32606443 - L1PA15 LINE L1 -777 5388 4889 1147 288 83 26 chr9 85256304 85257179 -32605448 - L1MEc LINE L1 -4410 2153 1229 585 207 67 0 chr9 85257183 85257347 -32605280 - L1MB3 LINE L1 0 6183 6009 31 26 0 0 chr9 85257352 85257390 -32605237 + AT_rich Low_complexity Low_complexity 1 38 0 1076 119 0 0 chr9 85257394 85257537 -32605090 + AluSg/x SINE Alu 135 277 -35 522 57 0 0 chr9 85257537 85257607 -32605020 + (TA)n Simple_repeat Simple_repeat 2 71 0 588 301 33 38 chr9 85257689 85258088 -32604539 - L1MEc LINE L1 -5534 1029 633 446 298 112 11 chr9 85258700 85258878 -32603749 - MIR SINE MIR -15 247 52 21 0 0 0 chr9 85258905 85258926 -32603701 + AT_rich Low_complexity Low_complexity 1 21 0 475 240 47 39 chr9 85259090 85259219 -32603408 - MIR3 SINE MIR -45 163 34 474 211 22 0 chr9 85261020 85261110 -32601517 + MER58B DNA MER1_type 250 341 0 386 308 80 27 chr9 85261279 85261542 -32601085 + HAL1b LINE L1 450 726 -622 2102 127 0 0 chr9 85261829 85262121 -32600506 - AluSx SINE Alu -6 306 15 374 311 83 16 chr9 85262252 85262445 -32600182 + MLT1I LTR MaLR 1 206 -203 317 265 99 50 chr9 85263052 85263233 -32599394 - L2 LINE L2 -1307 2007 1818 347 352 28 28 chr9 85263528 85263704 -32598923 - L3 LINE CR1 -224 1353 1178 246 373 73 17 chr9 85263820 85263997 -32598630 + L3 LINE CR1 178 364 -1213 445 298 45 34 chr9 85264210 85264388 -32598239 + MER5A DNA MER1_type 2 181 -8 213 366 142 41 chr9 85264405 85265200 -32597427 + L2 LINE L2 2185 3084 -188 1046 297 42 11 chr9 85265461 85265842 -32596785 + L3 LINE CR1 563 955 -622 1102 323 98 30 chr9 85266071 85267077 -32595550 - L2 LINE L2 0 3313 2228 433 245 43 92 chr9 85267231 85267415 -32595212 - MLT1L LTR MaLR -2 613 439 21 0 0 0 chr9 85267531 85267552 -32595075 + AT_rich Low_complexity Low_complexity 1 21 0 655 264 100 28 chr9 85267588 85268180 -32594447 - L1MC4 LINE L1 -140 7902 7247 801 156 0 0 chr9 85268977 85269105 -32593522 - AluSg/x SINE Alu -6 306 179 322 315 162 25 chr9 85269701 85269936 -32592691 + L3 LINE CR1 483 749 -828 1896 124 7 7 chr9 85269943 85270242 -32592385 + L1MC1 LINE L1 6026 6324 -9 1128 200 4 0 chr9 85270259 85270489 -32592138 + L1MB3 LINE L1 5953 6183 0 240 200 0 0 chr9 85272170 85272225 -32590402 + CT-rich Low_complexity Low_complexity 4 58 0 1330 19 0 0 chr9 85272464 85272624 -32590003 + L1P LINE L1 5040 5199 -947 183 343 153 37 chr9 85273748 85273964 -32588663 + L2 LINE L2 3030 3270 -2 1075 275 95 14 chr9 85273992 85274436 -32588191 + L2 LINE L2 2759 3282 -31 29 28 0 0 chr9 85274993 85275029 -32587598 + AT_rich Low_complexity Low_complexity 1 36 0 255 385 33 25 chr9 85275327 85275449 -32587178 - L2 LINE L2 0 3272 3150 201 147 0 0 chr9 85275722 85275756 -32586871 + (T)n Simple_repeat Simple_repeat 1 34 0 369 335 25 62 chr9 85276423 85276662 -32585965 + MIR SINE MIR 17 250 -12 314 278 22 0 chr9 85276783 85276873 -32585754 + MIR SINE MIR 56 147 -61 700 298 29 33 chr9 85276964 85277206 -32585421 + MIR SINE MIR 18 258 -4 22 0 0 0 chr9 85277960 85277982 -32584645 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr9 85278077 85278099 -32584528 + AT_rich Low_complexity Low_complexity 1 22 0 424 287 66 88 chr9 85278390 85279023 -32583604 + L2 LINE L2 2605 3269 -3 262 316 181 7 chr9 85279592 85279747 -32582880 - MIR SINE MIR 0 262 81 922 274 32 42 chr9 85279766 85280076 -32582551 - MLT1I LTR MaLR -23 386 80 235 324 0 29 chr9 85280178 85280246 -32582381 - MIR SINE MIR -127 81 16 210 305 17 0 chr9 85280980 85281039 -32581588 - L2 LINE L2 -4 3268 3209 459 320 86 62 chr9 85281449 85281952 -32580675 + L2 LINE L2 2263 2777 -537 183 345 59 50 chr9 85282128 85282247 -32580380 + L2 LINE L2 2976 3095 -177 208 302 163 0 chr9 85282339 85282468 -32580159 - MIR SINE MIR -66 196 47 318 327 5 24 chr9 85283158 85283301 -32579326 - MER5B DNA MER1_type 0 178 49 377 274 51 34 chr9 85283663 85283780 -32578847 - MIR SINE MIR -74 134 16 27 0 0 0 chr9 85284131 85284158 -32578469 + AT_rich Low_complexity Low_complexity 1 27 0 258 221 58 0 chr9 85284897 85284983 -32577644 - L1ME4a LINE L1 -188 5933 5843 322 245 75 19 chr9 85286507 85286613 -32576014 + MIR SINE MIR 37 148 -60 314 355 174 26 chr9 85286812 85287232 -32575395 + L2 LINE L2 2793 3272 0 311 265 10 41 chr9 85288320 85288418 -32574209 + MIR SINE MIR 81 175 -87 23 0 0 0 chr9 85288882 85288905 -32573722 + AT_rich Low_complexity Low_complexity 1 23 0 278 261 0 0 chr9 85288905 85288970 -32573657 - L2 LINE L2 -4 3268 3204 2439 87 3 0 chr9 85289282 85289591 -32573036 + AluSp SINE Alu 1 310 -3 189 354 13 0 chr9 85289602 85289681 -32572946 - L2 LINE L2 -526 2788 2709 657 299 80 37 chr9 85290190 85290515 -32572112 + MLT1I LTR MaLR 9 347 -62 742 198 30 110 chr9 85290518 85290581 -32572046 - MER20 DNA MER1_type -1 218 152 1688 131 75 72 chr9 85290581 85290955 -32571672 + THE1C LTR MaLR 1 375 0 742 198 30 110 chr9 85290955 85291128 -32571499 - MER20 DNA MER1_type -67 152 1 257 281 47 0 chr9 85291644 85291708 -32570919 + MIR SINE MIR 196 262 0 195 330 183 9 chr9 85291770 85291885 -32570742 + L2 LINE L2 3138 3272 0 259 292 84 78 chr9 85292142 85292296 -32570331 + MIR SINE MIR 30 184 -78 449 337 74 23 chr9 85293200 85293458 -32569169 + L3 LINE CR1 1232 1502 -75 206 368 0 0 chr9 85293484 85293541 -32569086 - L3 LINE CR1 -45 1532 1476 232 292 31 15 chr9 85294335 85294400 -32568227 - MIR SINE MIR -142 120 55 310 245 28 98 chr9 85294874 85295017 -32567610 - MIR SINE MIR -67 195 63 21 57 0 0 chr9 85295273 85295308 -32567319 + AT_rich Low_complexity Low_complexity 1 35 0 398 191 133 19 chr9 85296632 85296737 -32565890 + MER3 DNA MER1_type 93 209 0 322 189 0 0 chr9 85296694 85296747 -32565880 - MER3 DNA MER1_type -119 90 38 * 380 355 82 7 chr9 85296823 85297116 -32565511 + L1MC/D LINE L1 5432 5746 -2062 644 296 89 0 chr9 85297461 85297664 -32564963 + MIR SINE MIR 18 238 -24 371 256 98 0 chr9 85297815 85297948 -32564679 - L1M4 LINE L1 -878 5268 5123 278 314 95 40 chr9 85298000 85298252 -32564375 + Charlie8 DNA MER1_type 142 407 -2010 386 283 14 2 chr9 85298638 85298742 -32563885 - MIR SINE MIR -70 138 33 483 349 54 22 chr9 85298872 85299425 -32563202 - L1M4 LINE L1 -2761 3385 2815 342 273 47 60 chr9 85299425 85299575 -32563052 + MLT1I LTR MaLR 1 147 -262 5397 10 0 2 chr9 85299697 85300308 -32562319 + L1PA2 LINE L1 5545 6154 -1 186 43 0 0 chr9 85301468 85301491 -32561136 + (TG)n Simple_repeat Simple_repeat 2 24 0 410 221 98 16 chr9 85302411 85302533 -32560094 + MIR SINE MIR 66 197 -65 643 251 64 6 chr9 85303656 85303827 -32558800 - MLT1I LTR MaLR -4 405 225 231 296 88 40 chr9 85303863 85303988 -32558639 - L2 LINE L2 -560 2754 2624 216 158 0 0 chr9 85306242 85306280 -32556347 + GA-rich Low_complexity Low_complexity 4 41 0 583 297 49 16 chr9 85306593 85306778 -32555849 - MIR SINE MIR -19 243 53 186 328 123 49 chr9 85307021 85307143 -32555484 + MIR SINE MIR 113 243 -19 230 263 73 0 chr9 85307569 85307630 -32554997 - MIR SINE MIR -55 153 95 1828 213 73 40 chr9 85307810 85308307 -32554320 + L1MD3 LINE L1 4633 5112 -1054 1954 145 3 0 chr9 85308307 85308596 -32554031 + AluSx SINE Alu 1 290 -22 1828 213 73 40 chr9 85308596 85308649 -32553978 + L1MD3 LINE L1 5112 5162 -1004 2164 107 0 55 chr9 85308649 85308976 -32553651 + AluSx SINE Alu 3 311 -1 1828 213 73 40 chr9 85308976 85309890 -32552737 + L1MD3 LINE L1 5162 6161 -5 216 67 0 0 chr9 85311384 85311414 -32551213 + (TG)n Simple_repeat Simple_repeat 2 31 0 465 313 104 10 chr9 85311677 85311878 -32550749 + MIR SINE MIR 19 238 -24 2207 164 13 18 chr9 85311977 85312361 -32550266 - MLT1B LTR MaLR 0 390 9 255 203 0 0 chr9 85312589 85312653 -32549974 + (TA)n Simple_repeat Simple_repeat 2 65 0 364 270 90 9 chr9 85312673 85312784 -32549843 + L2 LINE L2 3167 3286 -27 703 316 62 4 chr9 85313770 85314014 -32548613 + MIR SINE MIR 3 260 -2 242 343 10 20 chr9 85314246 85314345 -32548282 - MIR SINE MIR -6 256 159 226 24 0 73 chr9 85314457 85314498 -32548129 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 259 256 188 17 chr9 85314771 85314888 -32547739 + MLT1K LTR MaLR 347 483 -105 453 361 24 0 chr9 85315322 85315488 -32547139 + MIR SINE MIR 23 192 -70 9749 65 13 0 chr9 85315578 85317629 -32544998 - L1PA6 LINE L1 -2 6152 4081 250 172 47 0 chr9 85317714 85317778 -32544849 + (TTA)n Simple_repeat Simple_repeat 3 69 0 257 226 89 32 chr9 85317786 85317910 -32544717 - L1ME4a LINE L1 -31 6090 5960 396 313 139 40 chr9 85318226 85318651 -32543976 - L1ME4a LINE L1 -2037 5771 5305 329 294 84 39 chr9 85318718 85319004 -32543623 - L1ME4a LINE L1 -875 5271 4973 415 333 28 28 chr9 85319179 85319395 -32543232 - MIR SINE MIR -15 247 32 335 299 72 18 chr9 85321078 85321245 -32541382 + MIR3 SINE MIR 9 184 -24 1680 271 47 42 chr9 85321706 85322444 -32540183 + L1M3f LINE L1 6 679 -4820 1139 234 47 0 chr9 85322456 85322730 -32539897 + L1 LINE L1 4913 5199 -947 360 303 42 17 chr9 85322767 85322886 -32539741 - MIR SINE MIR -109 153 32 2398 242 61 12 chr9 85323107 85324056 -32538571 + L1MD2 LINE L1 2486 3478 -3062 * 4966 132 46 45 chr9 85324047 85325060 -32537567 + L1PB4 LINE L1 5137 6153 -3 3888 242 61 42 chr9 85325054 85326722 -32535905 + L1MD2 LINE L1 3475 5173 -1367 * 1374 148 55 72 chr9 85326729 85327019 -32535608 + AluSx SINE Alu 9 293 -19 1054 127 0 19 chr9 85327103 85327260 -32535367 - AluSg/x SINE Alu -24 286 133 4311 217 71 16 chr9 85327264 85328507 -32534120 + L1MD2 LINE L1 5243 6569 -184 225 0 0 0 chr9 85328507 85328532 -32534095 + (CA)n Simple_repeat Simple_repeat 1 25 0 4311 217 71 16 chr9 85328532 85328706 -32533921 + L1MD2 LINE L1 6569 6732 -21 28 71 0 0 chr9 85328706 85328762 -32533865 + AT_rich Low_complexity Low_complexity 1 56 0 2144 168 5 5 chr9 85328769 85329157 -32533470 - L1PB3 LINE L1 -2 6803 6416 14119 225 38 27 chr9 85329257 85329456 -32533171 - L1PB3 LINE L1 -579 6237 6042 2401 103 0 0 chr9 85329456 85329768 -32532859 - AluSq SINE Alu -1 312 1 14119 225 38 27 chr9 85329768 85335344 -32527283 - L1PB3 LINE L1 -774 6042 1 2216 251 116 74 chr9 85335395 85335981 -32526646 - HAL1 LINE L1 -539 1968 1408 2504 61 0 0 chr9 85335981 85336275 -32526352 - AluY SINE Alu -17 294 1 2216 251 116 74 chr9 85336275 85337100 -32525527 - HAL1 LINE L1 -1099 1408 498 8765 181 59 16 chr9 85337215 85339590 -32523037 - L1M2 LINE L1 -514 6737 4260 1159 189 25 119 chr9 85339590 85339993 -32522634 - MLT1A1 LTR MaLR 0 365 1 1700 176 16 78 chr9 85339993 85340379 -32522248 - MLT1A1-int LTR MaLR 0 1735 1374 4891 90 21 6 chr9 85340398 85341119 -32521508 - L1PB1 LINE L1 -2 6149 5418 1883 172 35 9 chr9 85341219 85341562 -32521065 - MLT1A1-int LTR MaLR -1360 375 24 893 195 75 127 chr9 85341605 85341911 -32520716 - MLT1A1 LTR MaLR 0 365 82 2265 132 86 8 chr9 85341911 85342305 -32520322 - MSTA LTR MaLR 0 428 4 893 195 75 127 chr9 85342305 85342383 -32520244 - MLT1A1 LTR MaLR -283 82 1 3618 247 53 57 chr9 85342408 85345622 -32517005 - L1M2 LINE L1 -2867 4239 73 1132 68 0 197 chr9 85345625 85345874 -32516753 - THE1C-int LTR MaLR -1376 204 5 1709 147 85 21 chr9 85345890 85346230 -32516397 - THE1C LTR MaLR -13 362 1 4269 98 21 10 chr9 85346437 85347061 -32515566 + L1PA11 LINE L1 5537 6167 -7 394 298 87 70 chr9 85347093 85347476 -32515151 - L1 LINE L1 -2286 3860 3470 3558 39 5 0 chr9 85347476 85347911 -32514716 - L1PA4 LINE L1 -3 6152 5716 394 298 87 70 chr9 85347911 85348118 -32514509 - L1 LINE L1 -2676 3470 3268 257 329 0 0 chr9 85348514 85348587 -32514040 - MIR SINE MIR -55 153 81 248 314 129 0 chr9 85349296 85349420 -32513207 + L2 LINE L2 2815 2954 -359 1691 247 39 61 chr9 85349422 85350010 -32512617 - MLT1E2 LTR MaLR 0 626 52 901 275 48 36 chr9 85350066 85350400 -32512227 + L2 LINE L2 2976 3313 0 413 359 39 34 chr9 85350678 85350923 -32511704 + MIR3 SINE MIR 3 246 -16 203 352 11 23 chr9 85351379 85351467 -32511160 + MIR SINE MIR 36 122 -86 502 290 45 1 chr9 85351534 85351717 -32510910 - MIR SINE MIR 0 262 74 228 293 33 60 chr9 85351724 85351874 -32510753 - L3 LINE CR1 -795 782 637 350 220 33 11 chr9 85351877 85351968 -32510659 + L2 LINE L2 3221 3313 0 2162 124 3 7 chr9 85352075 85352382 -32510245 - AluSc SINE Alu -3 306 1 209 380 18 0 chr9 85352392 85352505 -32510122 - L3 LINE CR1 -1081 496 382 476 297 97 74 chr9 85353350 85353660 -32508967 + HAL1 LINE L1 1846 2162 -345 619 283 162 66 chr9 85353682 85354181 -32508446 + MLT1H LTR MaLR 3 549 0 413 245 178 35 chr9 85354181 85354467 -32508160 + HAL1 LINE L1 2180 2506 -1 2266 100 0 0 chr9 85354860 85355149 -32507478 + AluSx SINE Alu 3 291 -21 426 39 0 0 chr9 85355149 85355201 -32507426 + (TA)n Simple_repeat Simple_repeat 2 53 0 180 289 33 83 chr9 85356229 85356295 -32506332 - L2 LINE L2 -18 3295 3227 1472 157 65 23 chr9 85356295 85356556 -32506071 + AluJo SINE Alu 24 295 -17 2234 116 0 6 chr9 85356556 85356867 -32505760 + AluSg SINE Alu 1 309 -1 180 289 33 83 chr9 85356867 85356920 -32505707 - L2 LINE L2 -84 3229 3181 448 252 31 8 chr9 85356993 85357120 -32505507 - MIR SINE MIR -44 218 89 364 315 0 54 chr9 85357208 85357357 -32505270 - L2 LINE L2 -189 3083 2943 186 103 0 0 chr9 85358212 85358241 -32504386 + (T)n Simple_repeat Simple_repeat 1 29 0 314 270 22 0 chr9 85358471 85358560 -32504067 + (TATG)n Simple_repeat Simple_repeat 4 94 0 696 167 35 0 chr9 85360246 85360360 -32502267 - FLAM_C SINE Alu -15 118 1 280 304 13 0 chr9 85360370 85360449 -32502178 + CT-rich Low_complexity Low_complexity 1 80 0 260 381 12 12 chr9 85360846 85361014 -32501613 + MIR3 SINE MIR 32 199 -9 447 281 69 44 chr9 85361775 85361969 -32500658 + MIR SINE MIR 34 233 -29 319 225 22 79 chr9 85362761 85362850 -32499777 - MIR SINE MIR -100 162 79 221 267 19 57 chr9 85363758 85363863 -32498764 - MIR SINE MIR -6 256 156 615 258 48 38 chr9 85364131 85364340 -32498287 + MIR SINE MIR 4 214 -48 243 0 0 0 chr9 85364348 85364375 -32498252 + (CA)n Simple_repeat Simple_repeat 2 28 0 377 130 78 78 chr9 85364376 85364453 -32498174 + Tigger3(Golem) DNA MER2_type 4 80 -2949 489 214 68 0 chr9 85364588 85364691 -32497936 + Tigger3(Golem) DNA MER2_type 2929 3038 0 23 54 0 0 chr9 85365800 85365837 -32496790 + AT_rich Low_complexity Low_complexity 1 37 0 432 316 91 11 chr9 85366614 85366801 -32495826 + MIR SINE MIR 46 247 -15 248 358 22 7 chr9 85366817 85366954 -32495673 + MIR SINE MIR 78 216 -46 1171 184 0 34 chr9 85367315 85367549 -32495078 - AluJb SINE Alu 0 312 87 262 356 43 0 chr9 85367585 85367700 -32494927 - L2 LINE L2 0 3272 3153 247 325 57 8 chr9 85367841 85367964 -32494663 + MIR SINE MIR 64 192 -70 470 314 33 0 chr9 85368176 85368329 -32494298 - MIR SINE MIR -56 206 49 2057 264 41 34 chr9 85368782 85369687 -32492940 - L2 LINE L2 -4 3309 2395 248 250 29 44 chr9 85370630 85370698 -32491929 - L2 LINE L2 0 3272 3206 1552 300 167 29 chr9 85370770 85371984 -32490643 - L2 LINE L2 -42 3271 1868 505 371 121 9 chr9 85372279 85372742 -32489885 - L2 LINE L2 -546 2768 2254 312 27 0 0 chr9 85372799 85372836 -32489791 + (TA)n Simple_repeat Simple_repeat 1 37 0 236 356 133 46 chr9 85372911 85373240 -32489387 - L2 LINE L2 -1460 1854 1555 2408 91 0 0 chr9 85373240 85373538 -32489089 + AluY SINE Alu 1 298 -13 236 356 133 46 chr9 85373538 85374239 -32488388 - L2 LINE L2 -1759 1555 704 185 0 0 39 chr9 85374239 85374265 -32488362 + (AAGTG)n Simple_repeat Simple_repeat 3 27 0 236 356 133 46 chr9 85374265 85374426 -32488201 - L2 LINE L2 -2610 704 558 193 372 48 21 chr9 85376121 85376266 -32486361 + L2 LINE L2 2771 2919 -395 1529 162 24 24 chr9 85376481 85376771 -32485856 - MLT2C1 LTR ERVL -107 290 1 727 280 58 18 chr9 85376918 85377300 -32485327 + L1ME2 LINE L1 2429 2825 -3321 1835 277 132 9 chr9 85377401 85377939 -32484688 - MLT2F LTR ERVL -59 604 1 715 202 41 28 chr9 85377942 85378160 -32484467 + L1ME2 LINE L1 2839 3059 -3087 1479 271 84 27 chr9 85378222 85379113 -32483514 + L1ME2 LINE L1 3182 4123 -2023 2689 216 92 17 chr9 85379142 85380002 -32482625 + L1ME2 LINE L1 5220 6145 -19 21 57 0 0 chr9 85380749 85380784 -32481843 + AT_rich Low_complexity Low_complexity 1 35 0 2307 78 0 3 chr9 85380788 85381097 -32481530 + AluY SINE Alu 1 308 -3 776 283 77 18 chr9 85381121 85381457 -32481170 - L1MC4 LINE L1 -980 7062 6707 8098 125 27 2 chr9 85381468 85382733 -32479894 + HSMAR2 DNA Mariner 6 1301 -1 244 269 191 7 chr9 85383395 85383536 -32479091 - MLT1L LTR MaLR -431 184 18 875 133 0 22 chr9 85385332 85385467 -32477160 - FLAM_C SINE Alu 0 133 2 202 330 18 18 chr9 85385717 85385826 -32476801 + MIR SINE MIR 80 188 -74 412 365 157 6 chr9 85385863 85386175 -32476452 + L3 LINE CR1 1208 1566 -11 5707 164 32 7 chr9 85386459 85387600 -32475027 - L1 LINE L1 -1840 4306 3138 567 333 84 8 chr9 85387831 85388068 -32474559 + MIR SINE MIR 2 256 -6 2298 100 0 0 chr9 85388183 85388483 -32474144 - AluY SINE Alu -11 300 1 219 204 20 0 chr9 85388535 85388584 -32474043 + (TTTA)n Simple_repeat Simple_repeat 1 50 0 181 324 89 58 chr9 85389205 85389430 -32473197 - L2 LINE L2 -337 2977 2746 224 227 0 0 chr9 85389639 85389683 -32472944 + CT-rich Low_complexity Low_complexity 2 45 0 33 25 0 0 chr9 85391405 85391445 -32471182 + AT_rich Low_complexity Low_complexity 1 40 0 588 275 12 19 chr9 85391465 85391625 -32471002 + MIR SINE MIR 5 163 -99 282 216 0 40 chr9 85391620 85391694 -32470933 - MIR SINE MIR -26 236 166 * 189 346 0 13 chr9 85391701 85391779 -32470848 + MIR SINE MIR 185 261 -1 388 335 28 22 chr9 85391809 85391991 -32470636 - MIR SINE MIR -59 203 21 306 0 0 0 chr9 85393122 85393156 -32469471 + (A)n Simple_repeat Simple_repeat 1 34 0 5215 84 7 8 chr9 85393940 85394763 -32467864 - L1PB1 LINE L1 -157 5994 5172 1744 257 110 39 chr9 85394764 85395308 -32467319 - MLT-int LTR MaLR -346 1389 807 324 49 0 0 chr9 85445316 85445357 -32417270 + Tigger4(Zombi) DNA MER2_type 2690 2730 -1 2146 111 3 0 chr9 85446227 85446515 -32416112 - AluSc SINE Alu -20 289 1 2161 96 10 0 chr9 85446823 85447126 -32415501 - AluY SINE Alu -5 306 1 34 24 0 0 chr9 85447304 85447345 -32415282 + AT_rich Low_complexity Low_complexity 1 41 0 34 24 0 0 chr9 85447559 85447600 -32415027 + AT_rich Low_complexity Low_complexity 1 41 0 295 351 68 4 chr9 85447892 85448140 -32414487 - L1ME LINE L1 -594 5572 5309 5289 65 6 4 chr9 85448162 85448859 -32413768 - L1PA7 LINE L1 0 6154 5457 1401 206 37 14 chr9 85448959 85449309 -32413318 + MLT1C LTR MaLR 110 467 0 715 232 67 93 chr9 85449309 85449551 -32413076 + L1ME LINE L1 5403 5633 -537 2096 111 0 23 chr9 85449551 85449858 -32412769 + AluSc SINE Alu 1 300 -9 715 232 67 93 chr9 85449858 85449990 -32412637 + L1ME LINE L1 5633 5767 -403 2730 126 19 2 chr9 85451331 85451793 -32410834 + L1MA4 LINE L1 5827 6296 -4 209 219 0 16 chr9 85451895 85451959 -32410668 + (TAAA)n Simple_repeat Simple_repeat 3 65 0 2282 106 0 0 chr9 85452139 85452431 -32410196 - AluSg SINE Alu -18 292 1 198 71 0 0 chr9 85452448 85452476 -32410151 + (TA)n Simple_repeat Simple_repeat 2 29 0 1187 148 20 0 chr9 85452698 85452900 -32409727 + MER46B DNA MER2_type 1 81 -155 242 289 164 10 chr9 85453363 85453467 -32409160 + MIR SINE MIR 30 149 -113 4441 167 101 8 chr9 85454097 85454946 -32407681 - LTR28 LTR ERV1 0 1020 93 21 0 0 0 chr9 85455216 85455237 -32407390 + AT_rich Low_complexity Low_complexity 1 21 0 2371 152 40 99 chr9 85455710 85456257 -32406370 - MLT2B2 LTR ERVL 0 515 1 323 169 84 12 chr9 85456423 85456506 -32406121 - L1MC4 LINE L1 -1339 6703 6615 294 204 32 11 chr9 85456509 85456602 -32406025 + (TA)n Simple_repeat Simple_repeat 1 95 0 1845 214 27 20 chr9 85456602 85457045 -32405582 + MER82 DNA MER2_type 207 652 -1 1723 42 0 0 chr9 85457108 85457325 -32405302 + L1P LINE L1 1854 2070 -4076 763 312 133 22 chr9 85457944 85458546 -32404081 + L2 LINE L2 2639 3313 0 433 268 36 14 chr9 85458605 85458743 -32403884 - MIR SINE MIR -71 191 51 369 342 33 33 chr9 85458980 85459164 -32403463 + L1ME4a LINE L1 5716 5899 -222 226 280 43 11 chr9 85459181 85459274 -32403353 + L1ME LINE L1 147 242 -5963 293 284 68 20 chr9 85460159 85460409 -32402218 + L1ME LINE L1 1135 1396 -5000 2219 104 23 127 chr9 85460441 85460913 -32401714 + MER4A LTR ERV1 1 423 -241 488 84 244 53 chr9 85460931 85461062 -32401565 + MER4C LTR ERV1 277 432 -33 703 323 19 11 chr9 85461069 85461438 -32401189 + L1ME LINE L1 1387 1758 -4638 3101 142 2 4 chr9 85461796 85462305 -32400322 - MER75 DNA T2_type -4 510 3 218 128 83 9 chr9 85462448 85462557 -32400070 + (TA)n Simple_repeat Simple_repeat 2 118 0 208 151 57 0 chr9 85462599 85462652 -32399975 + (TATAA)n Simple_repeat Simple_repeat 4 59 0 446 99 70 23 chr9 85462655 85462826 -32399801 + (TA)n Simple_repeat Simple_repeat 2 180 0 10044 163 14 31 chr9 85462871 85465652 -32396975 + L1P3 LINE L1 2 2843 -3618 2255 114 0 7 chr9 85465652 85465958 -32396669 - AluSq SINE Alu -8 305 2 10044 163 14 31 chr9 85465958 85466456 -32396171 + L1P3 LINE L1 2843 3348 -3113 287 177 16 0 chr9 85467394 85467456 -32395171 + CT-rich Low_complexity Low_complexity 5 67 0 213 259 37 0 chr9 85467481 85467589 -32395038 + (TA)n Simple_repeat Simple_repeat 1 112 0 4337 24 0 0 chr9 85468078 85468579 -32394048 + L1PA3 LINE L1 5652 6152 -3 184 368 123 9 chr9 85468721 85468835 -32393792 - MIR SINE MIR -62 146 20 642 171 8 8 chr9 85469155 85469284 -32393343 - LTR33 LTR ERVL -5 516 388 641 241 73 26 chr9 85469313 85469504 -32393123 - LTR33 LTR ERVL -297 224 25 452 346 53 10 chr9 85469707 85469915 -32392712 - MIR SINE MIR -30 232 16 308 194 16 0 chr9 85470556 85470618 -32392009 - L1MC4 LINE L1 -1339 6703 6641 279 274 32 21 chr9 85471026 85471121 -32391506 + MIR SINE MIR 94 189 -73 293 165 282 0 chr9 85471361 85471446 -32391181 - L2 LINE L2 -5 3308 3200 408 293 98 49 chr9 85472773 85472978 -32389649 + MIR SINE MIR 10 224 -38 1007 258 96 9 chr9 85473175 85473508 -32389119 - MLT1J LTR MaLR -147 364 3 262 286 36 0 chr9 85473783 85473867 -32388760 + L2 LINE L2 3186 3272 0 209 348 140 6 chr9 85473961 85474139 -32388488 + L2 LINE L2 1320 1521 -1793 1091 289 60 69 chr9 85474190 85474435 -32388192 + L2 LINE L2 1683 1929 -1385 1905 143 7 7 chr9 85474435 85474736 -32387891 - AluSx SINE Alu -1 311 11 1091 289 60 69 chr9 85474736 85475168 -32387459 + L2 LINE L2 1929 2354 -960 235 292 104 21 chr9 85475181 85475277 -32387350 + MIR SINE MIR 99 202 -60 215 298 101 25 chr9 85476207 85476383 -32386244 - MIR SINE MIR 0 262 30 668 253 30 0 chr9 85478549 85478715 -32383912 - MIR SINE MIR -6 256 86 757 124 138 0 chr9 85479213 85479358 -32383269 - L1MA1 LINE L1 0 6302 6138 2149 28 89 14 chr9 85481906 85482188 -32380439 + AluY SINE Alu 1 303 -8 2307 209 53 107 chr9 85482531 85482957 -32379670 + L1MC5 LINE L1 6629 7076 -885 1961 144 50 42 chr9 85482957 85483318 -32379309 + THE1B LTR MaLR 1 364 0 2307 209 53 107 chr9 85483318 85484241 -32378386 + L1MC5 LINE L1 7076 7906 -55 948 225 62 10 chr9 85485320 85485529 -32377098 - MIR SINE MIR -28 234 15 23 0 0 0 chr9 85485636 85485659 -32376968 + AT_rich Low_complexity Low_complexity 1 23 0 180 349 61 30 chr9 85485736 85485868 -32376759 - MIR SINE MIR -80 182 47 1151 164 62 82 chr9 85487465 85487769 -32374858 + MLT1D LTR MaLR 1 298 -207 * 1856 120 155 17 chr9 85487766 85488115 -32374512 + MSTA LTR MaLR 11 407 -21 26325 34 4 1 chr9 85488218 85492006 -32370621 + L1PA4 LINE L1 2359 6155 0 192 40 0 0 chr9 85492025 85492050 -32370577 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 665 291 109 0 chr9 85492784 85493014 -32369613 - MIR SINE MIR 0 262 8 387 315 50 36 chr9 85494486 85494708 -32367919 - MIR SINE MIR -26 236 12 2991 153 17 0 chr9 85494880 85495343 -32367284 - MER101 LTR ERV1 -3 471 1 2080 243 102 8 chr9 85495549 85496174 -32366453 + L1ME3A LINE L1 5470 6153 -17 595 263 103 5 chr9 85498080 85498304 -32364323 - MIR SINE MIR -2 260 15 189 313 22 95 chr9 85498343 85498522 -32364105 + L2 LINE L2 2934 3099 -173 293 312 92 18 chr9 85499858 85499967 -32362660 - L2 LINE L2 -19 3253 3137 378 231 179 45 chr9 85500168 85500324 -32362303 + MER5B DNA MER1_type 2 178 0 237 219 188 23 chr9 85500351 85500479 -32362148 - L2 LINE L2 -459 2855 2707 245 276 41 41 chr9 85500648 85500771 -32361856 + MIR3 SINE MIR 33 155 -53 185 277 133 12 chr9 85501109 85501192 -32361435 - L3b LINE CR1 -11 1572 1480 184 295 53 63 chr9 85501463 85501558 -32361069 + L2 LINE L2 2969 3062 -210 426 377 66 6 chr9 85501624 85501807 -32360820 + L2 LINE L2 3079 3272 0 236 301 56 79 chr9 85502539 85502805 -32359822 + L2 LINE L2 2548 2807 -507 2554 126 22 3 chr9 85503166 85503523 -32359104 + THE1B LTR MaLR 1 364 0 406 274 65 104 chr9 85503780 85504007 -32358620 - MLT1K LTR MaLR -116 472 238 1439 224 33 22 chr9 85504007 85504368 -32358259 - MLT1A1 LTR MaLR 0 365 1 406 274 65 104 chr9 85504368 85504630 -32357997 - MLT1K LTR MaLR -350 238 2 483 291 180 24 chr9 85506259 85506856 -32355771 + L1MEd LINE L1 1225 2001 -742 2230 103 7 0 chr9 85506891 85507182 -32355445 + AluSx SINE Alu 1 293 -19 5566 223 47 12 chr9 85507370 85508847 -32353780 + L1MB8 LINE L1 3654 5181 -965 3688 82 20 10 chr9 85508841 85509343 -32353284 + L1PA11 LINE L1 5522 6028 -146 * 2480 133 121 10 chr9 85509443 85509939 -32352688 - LTR1 LTR ERV1 -234 551 1 298 115 96 0 chr9 85509981 85510033 -32352594 + L1PA11 LINE L1 6117 6173 -1 4302 168 40 47 chr9 85510036 85511047 -32351580 + L1MB8 LINE L1 5171 6176 -2 7076 65 3 86 chr9 85511099 85511890 -32350737 - L1PA7 LINE L1 -3 6151 5296 1935 115 28 14 chr9 85511890 85512177 -32350450 - AluSg1 SINE Alu -18 291 1 7076 65 3 86 chr9 85512177 85512254 -32350373 - L1PA7 LINE L1 -858 5296 5214 2261 84 0 0 chr9 85512254 85512541 -32350086 - AluYa5 SINE Alu -24 287 1 7076 65 3 86 chr9 85512541 85512757 -32349870 - L1PA7 LINE L1 -940 5214 5093 364 306 67 19 chr9 85512791 85513000 -32349627 + L1MEd LINE L1 2258 2476 -3908 564 311 90 37 chr9 85513017 85513100 -32349527 + L1MEd LINE L1 2508 2585 -3797 5190 133 27 5 chr9 85513100 85513940 -32348687 + L1MA5A LINE L1 5439 6297 0 564 311 90 37 chr9 85513940 85514399 -32348228 + L1MEd LINE L1 2585 3079 -3303 23 33 0 0 chr9 85514534 85514564 -32348063 + AT_rich Low_complexity Low_complexity 1 30 0 288 272 222 0 chr9 85515247 85515328 -32347299 - L2 LINE L2 -22 3250 3152 2199 153 6 8 chr9 85515902 85516267 -32346360 - L1MA3 LINE L1 0 6305 5942 605 262 119 0 chr9 85516386 85516554 -32346073 - MIR SINE MIR -42 220 33 207 323 16 0 chr9 85517573 85517635 -32344992 - L2 LINE L2 -9 3263 3201 3987 112 179 77 chr9 85517792 85519194 -32343433 - pTR5 LTR ERV1 0 2438 743 2427 164 63 8 chr9 85519211 85519607 -32343020 + MER47B DNA MER2_type 1 418 0 203 262 96 81 chr9 85520202 85520427 -32342200 + MIR SINE MIR 14 238 -24 399 357 29 0 chr9 85520501 85520641 -32341986 + L2 LINE L2 3123 3266 -6 272 270 203 20 chr9 85520798 85520946 -32341681 - MIR3 SINE MIR -11 197 23 1248 102 12 0 chr9 85521386 85521553 -32341074 - AluSc SINE Alu -17 292 124 904 238 0 9 chr9 85521583 85521797 -32340830 - AluSg/x SINE Alu -32 278 67 293 324 144 35 chr9 85521917 85522225 -32340402 + L2 LINE L2 2679 3010 -262 2098 127 3 7 chr9 85522278 85522586 -32340041 + AluSx SINE Alu 1 307 -5 267 187 94 58 chr9 85522588 85522759 -32339868 - Charlie7 DNA MER1_type -49 2563 2387 897 258 37 54 chr9 85522815 85523164 -32339463 - Charlie7 DNA MER1_type -2078 534 192 236 246 115 31 chr9 85523417 85523547 -32339080 - Charlie7 DNA MER1_type -2470 142 2 255 221 58 47 chr9 85523557 85523643 -32338984 + L2 LINE L2 3016 3102 -211 2549 152 23 28 chr9 85523689 85524124 -32338503 + Tigger2a DNA MER2_type 1 433 -1 25 65 0 0 chr9 85524125 85524171 -32338456 + AT_rich Low_complexity Low_complexity 1 46 0 2104 128 0 7 chr9 85524641 85524937 -32337690 + AluSx SINE Alu 4 297 -15 931 233 0 0 chr9 85524949 85525121 -32337506 + FAM SINE Alu 4 175 0 360 259 67 83 chr9 85525259 85525452 -32337175 + MIR SINE MIR 31 220 -42 405 313 104 7 chr9 85525529 85525673 -32336954 - L2 LINE L2 -8 3264 3107 372 94 0 0 chr9 85525912 85525965 -32336662 + (TG)n Simple_repeat Simple_repeat 2 54 0 2421 145 45 5 chr9 85526007 85526407 -32336220 + MSTA LTR MaLR 1 416 -12 415 285 84 5 chr9 85526599 85526738 -32335889 - MIR SINE MIR -62 146 17 393 75 0 0 chr9 85527862 85527915 -32334712 + (TG)n Simple_repeat Simple_repeat 1 53 0 198 0 0 0 chr9 85528131 85528153 -32334474 + (TTA)n Simple_repeat Simple_repeat 2 23 0 371 300 15 31 chr9 85528272 85528402 -32334225 + L2 LINE L2 2932 3059 -213 562 225 95 30 chr9 85528484 85528684 -32333943 + MIR SINE MIR 6 218 -44 5588 128 25 7 chr9 85528790 85529705 -32332922 - L1PB3 LINE L1 -1 6153 5223 525 275 72 12 chr9 85529974 85530141 -32332486 - MER5B DNA MER1_type -1 177 1 1996 144 160 21 chr9 85530190 85530566 -32332061 + MSTA LTR MaLR 1 428 0 2782 132 26 1 chr9 85530568 85531016 -32331611 + MSTA-int LTR MaLR 3 519 -1162 186 274 74 74 chr9 85531387 85531482 -32331145 - L3 LINE CR1 -473 1104 1010 441 0 0 0 chr9 85531996 85532045 -32330582 + (TTA)n Simple_repeat Simple_repeat 3 51 0 18763 98 16 5 chr9 85532045 85535385 -32327242 - L1PA7 LINE L1 -18 6136 2767 332 311 48 48 chr9 85535509 85535655 -32326972 + MIR SINE MIR 16 160 -63 309 266 220 28 chr9 85535729 85535838 -32326789 + MIR SINE MIR 23 152 -110 1025 232 86 18 chr9 85535879 85536112 -32326515 - MER46C DNA MER2_type -39 299 38 2378 91 0 0 chr9 85536112 85536415 -32326212 - AluSc SINE Alu 0 309 12 1025 232 86 18 chr9 85536415 85536456 -32326171 - MER46C DNA MER2_type -300 38 1 371 300 0 0 chr9 85536456 85536566 -32326061 + MIR SINE MIR 153 262 0 246 62 0 0 chr9 85536782 85536814 -32325813 + (GA)n Simple_repeat Simple_repeat 2 33 0 1415 73 6 0 chr9 85537060 85537258 -32325369 + AluSp SINE Alu 105 303 0 739 310 81 39 chr9 85537301 85537821 -32324806 + L1ME3 LINE L1 1108 1649 -4747 7639 23 24 0 chr9 85537855 85538945 -32323682 - L1PA4 LINE L1 -5 6150 5055 1385 13 0 0 chr9 85538945 85539104 -32323523 + L1PA4 LINE L1 4914 5072 -1074 1948 272 56 14 chr9 85539179 85539877 -32322750 + L1ME3 LINE L1 5438 6164 -67 396 247 81 12 chr9 85539921 85540089 -32322538 + L1 LINE L1 2877 3135 -4551 2401 282 66 44 chr9 85540118 85540935 -32321692 + L1ME3A LINE L1 1953 2751 -3464 2457 76 0 13 chr9 85540935 85541250 -32321377 - AluY SINE Alu 0 311 1 2401 282 66 44 chr9 85541250 85542498 -32320129 + L1ME3A LINE L1 2751 4024 -2191 641 312 128 10 chr9 85542537 85543149 -32319478 + L1ME3A LINE L1 4688 5371 -844 5407 185 24 34 chr9 85543176 85544431 -32318196 + L1 LINE L1 5008 6249 -1316 1156 258 55 73 chr9 85544456 85545076 -32317551 + L1ME3A LINE L1 5415 6056 -175 1973 117 36 29 chr9 85545076 85545383 -32317244 + AluSx SINE Alu 1 309 -3 1156 258 55 73 chr9 85545383 85545477 -32317150 + L1ME3A LINE L1 6056 6150 -81 267 239 0 0 chr9 85545541 85545612 -32317015 + L1ME4a LINE L1 5979 6049 -72 1354 204 6 48 chr9 85545976 85546133 -32316494 + L1MB5 LINE L1 5874 6013 -161 1950 154 0 85 chr9 85546133 85546555 -32316072 + MLT1B LTR MaLR 1 386 -4 1354 204 6 48 chr9 85546555 85546710 -32315917 + L1MB5 LINE L1 6013 6173 -1 390 277 9 9 chr9 85546738 85546850 -32315777 + HAL1 LINE L1 378 489 -2018 1483 208 12 55 chr9 85546858 85547262 -32315365 - MER63B DNA MER1_type -49 387 1 462 299 101 5 chr9 85547992 85548209 -32314418 - MIR SINE MIR -23 239 2 263 328 15 0 chr9 85548350 85548481 -32314146 + (CAGAGA)n Simple_repeat Simple_repeat 4 136 0 246 311 42 50 chr9 85548488 85548607 -32314020 + L2 LINE L2 3196 3313 0 220 298 75 0 chr9 85549047 85549141 -32313486 + L2 LINE L2 2979 3079 -193 209 163 47 0 chr9 85549613 85549656 -32312971 + A-rich Low_complexity Low_complexity 4 48 0 2073 137 7 0 chr9 85549662 85549968 -32312659 + AluSx SINE Alu 1 308 -4 227 211 53 18 chr9 85550511 85550568 -32312059 - MIR SINE MIR -77 185 127 2097 123 17 0 chr9 85552039 85552332 -32310295 + AluSg SINE Alu 3 300 -10 192 322 185 20 chr9 85552721 85552867 -32309760 - MIR SINE MIR -61 201 32 266 379 91 33 chr9 85553122 85553520 -32309107 - L2 LINE L2 -4 3268 2848 217 327 30 10 chr9 85553990 85554091 -32308536 + L3 LINE CR1 1474 1576 -1 310 347 72 42 chr9 85554150 85554412 -32308215 + L2 LINE L2 2634 2903 -411 567 242 13 34 chr9 85555298 85555447 -32307180 - L2 LINE L2 -6 3307 3162 941 320 103 49 chr9 85555499 85556429 -32306198 - L2 LINE L2 -348 2966 1896 183 266 141 0 chr9 85556634 85556698 -32305929 + L2 LINE L2 3241 3313 0 850 21 0 0 chr9 85556857 85556954 -32305673 - L1P2 LINE L1 -420 5734 5638 1098 40 26 46 chr9 85556955 85557107 -32305520 + L1PA5 LINE L1 5993 6141 -13 248 346 93 31 chr9 85557521 85557898 -32304729 + L2 LINE L2 2644 3052 -220 466 286 161 5 chr9 85558006 85558230 -32304397 - MIR SINE MIR 0 262 4 22 0 0 0 chr9 85558407 85558429 -32304198 + AT_rich Low_complexity Low_complexity 1 22 0 661 330 62 16 chr9 85558488 85558797 -32303830 + L3 LINE CR1 1254 1576 -1 343 300 45 9 chr9 85559687 85559797 -32302830 + L2 LINE L2 3158 3271 -1 235 132 57 0 chr9 85560053 85560106 -32302521 + CT-rich Low_complexity Low_complexity 3 58 0 488 269 161 9 chr9 85560172 85560496 -32302131 - L1ME4a LINE L1 -44 6077 5705 320 276 37 60 chr9 85560513 85560647 -32301980 - L1ME4a LINE L1 -473 5648 5518 260 279 23 12 chr9 85560834 85560920 -32301707 + L1ME LINE L1 5512 5598 -523 264 197 0 16 chr9 85561031 85561092 -32301535 + L1ME LINE L1 5742 5801 -320 2199 61 3 55 chr9 85561921 85562233 -32300394 + AluY SINE Alu 4 299 -12 2007 95 0 0 chr9 85562497 85562760 -32299867 + AluY SINE Alu 46 308 -3 1953 136 0 0 chr9 85563327 85563648 -32298979 - AluSq SINE Alu 0 323 3 450 246 24 40 chr9 85563671 85563797 -32298830 + MIR SINE MIR 129 252 -10 811 181 39 6 chr9 85564100 85564282 -32298345 - MER53 DNA DNA -1 188 1 210 211 39 0 chr9 85565029 85565081 -32297546 + GA-rich Low_complexity Low_complexity 2 55 0 690 219 14 87 chr9 85565120 85565339 -32297288 - MIR SINE MIR -53 209 7 745 266 25 89 chr9 85565470 85565944 -32296683 + HAL1b LINE L1 346 789 -559 314 307 30 143 chr9 85566142 85566640 -32295987 + L2 LINE L2 2827 3268 -4 2118 98 7 3 chr9 85566892 85567178 -32295449 + AluSx SINE Alu 1 287 -25 22 0 0 0 chr9 85567178 85567200 -32295427 + AT_rich Low_complexity Low_complexity 1 22 0 1379 141 9 0 chr9 85567452 85567679 -32294948 + Tigger2 DNA MER2_type 1 229 -2489 2831 118 26 19 chr9 85567684 85568107 -32294520 + Tigger2 DNA MER2_type 388 813 -1905 3466 126 15 0 chr9 85568210 85568728 -32293899 + Tigger2 DNA MER2_type 1263 1788 -930 * 4306 133 33 11 chr9 85568726 85569425 -32293202 + Tigger2 DNA MER2_type 2001 2714 -4 214 119 17 51 chr9 85570342 85570351 -32292276 + (TAA)n Simple_repeat Simple_repeat 2 10 -48 1558 99 5 5 chr9 85570351 85570563 -32292064 + AluSg/x SINE Alu 87 298 -14 214 119 17 51 chr9 85570563 85570612 -32292015 + (TAA)n Simple_repeat Simple_repeat 10 58 0 790 286 80 33 chr9 85571612 85571939 -32290688 + MLT1I LTR MaLR 1 348 -61 1491 249 135 21 chr9 85571939 85572473 -32290154 + MLT1G1 LTR MaLR 1 595 0 790 286 80 33 chr9 85572473 85572509 -32290118 + MLT1I LTR MaLR 348 381 -28 270 239 28 0 chr9 85572528 85572599 -32290028 - MIR SINE MIR -111 151 79 229 402 9 19 chr9 85572750 85572857 -32289770 + L2 LINE L2 3153 3258 -14 2225 113 0 3 chr9 85573009 85573318 -32289309 - AluSg SINE Alu -2 308 1 291 207 107 67 chr9 85574002 85574152 -32288475 - L1ME4a LINE L1 -31 6090 5935 930 234 47 27 chr9 85574192 85574491 -32288136 - L1ME3A LINE L1 -12 6158 5854 3886 98 15 2 chr9 85574593 85575187 -32287440 - L1P LINE L1 -743 5403 4802 265 86 0 0 chr9 85575189 85575224 -32287403 + U2 snRNA snRNA 13 47 -141 366 256 146 7 chr9 85575425 85575562 -32287065 + L2 LINE L2 3158 3313 0 253 333 41 7 chr9 85575811 85575958 -32286669 - L1M4 LINE L1 -1299 4847 4696 4767 189 55 44 chr9 85575976 85576774 -32285853 + L1MDa LINE L1 752 1569 -4971 2307 105 0 0 chr9 85576774 85577079 -32285548 + AluSx SINE Alu 1 305 -7 4767 189 55 44 chr9 85577079 85577481 -32285146 + L1MDa LINE L1 1569 1965 -4575 26 30 0 0 chr9 85577484 85577517 -32285110 + AT_rich Low_complexity Low_complexity 1 33 0 289 292 236 0 chr9 85577773 85577917 -32284710 - MER117 DNA MER1_type -19 178 1 182 189 0 0 chr9 85577925 85577962 -32284665 - L2 LINE L2 -108 3205 3169 246 329 107 17 chr9 85578053 85578179 -32284448 - MIR SINE MIR 0 262 149 894 245 66 63 chr9 85578179 85578542 -32284085 - MLT1A1 LTR MaLR 0 365 2 246 329 107 17 chr9 85578542 85578649 -32283978 - MIR SINE MIR -113 149 8 1414 134 40 13 chr9 85578771 85578995 -32283632 + MER30 DNA MER1_type 1 230 0 2096 235 28 8 chr9 85579064 85579537 -32283090 + L1ME1 LINE L1 5681 6162 -4 5181 79 3 6 chr9 85579548 85580255 -32282372 - L1PA7 LINE L1 -3 6151 5447 3668 71 15 15 chr9 85580255 85580826 -32281801 + L1PA7 LINE L1 4860 5431 -741 203 146 24 0 chr9 85580955 85580996 -32281631 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 22 0 0 0 chr9 85581227 85581249 -32281378 + AT_rich Low_complexity Low_complexity 1 22 0 6385 241 55 22 chr9 85581352 85583755 -32278872 + L1MDa LINE L1 2264 4751 -1789 1524 222 10 52 chr9 85584055 85584460 -32278167 - MLT2C1 LTR ERVL 0 397 10 241 394 14 14 chr9 85584869 85585011 -32277616 - L2 LINE L2 -461 2853 2712 8905 170 33 36 chr9 85585565 85586338 -32276289 + L1PB3 LINE L1 2814 3587 -3283 2219 124 7 0 chr9 85586338 85586636 -32275991 + AluSx SINE Alu 1 300 -12 8905 170 33 36 chr9 85586636 85587250 -32275377 + L1PB3 LINE L1 3587 4201 -2669 288 0 0 0 chr9 85587250 85587282 -32275345 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 8905 170 33 36 chr9 85587282 85589570 -32273057 + L1PB3 LINE L1 4201 6493 -377 180 0 0 0 chr9 85589570 85589590 -32273037 + (CA)n Simple_repeat Simple_repeat 2 21 0 8905 170 33 36 chr9 85589590 85589628 -32272999 + L1PB3 LINE L1 6493 6530 -340 2245 101 44 0 chr9 85589628 85589924 -32272703 + AluSc SINE Alu 1 309 0 8905 170 33 36 chr9 85589924 85590259 -32272368 + L1PB3 LINE L1 6530 6869 -1 203 200 100 0 chr9 85590265 85590315 -32272312 + MIR SINE MIR 136 190 -72 667 279 121 62 chr9 85590426 85590881 -32271746 + MLT1J LTR MaLR 22 503 -8 285 319 133 43 chr9 85590967 85591155 -32271472 + MIR3 SINE MIR 3 207 -1 222 118 0 0 chr9 85591466 85591500 -32271127 + (GAAA)n Simple_repeat Simple_repeat 2 35 0 22 0 0 0 chr9 85591706 85591728 -32270899 + AT_rich Low_complexity Low_complexity 1 22 0 402 286 6 36 chr9 85591983 85592151 -32270476 - MER117 DNA MER1_type -34 163 1 2185 118 10 0 chr9 85592382 85592678 -32269949 + AluSq SINE Alu 1 299 -14 398 313 60 7 chr9 85592922 85593072 -32269555 + MIR SINE MIR 27 184 -78 238 291 57 97 chr9 85593757 85593932 -32268695 + L2 LINE L2 2583 2750 -564 331 280 108 6 chr9 85594116 85594273 -32268354 - MLT1L LTR MaLR -236 379 207 1808 96 0 55 chr9 85594372 85594643 -32267984 + AluSx SINE Alu 29 284 -28 1948 134 28 0 chr9 85595105 85595395 -32267232 - AluSx SINE Alu -14 298 1 13217 114 15 9 chr9 85595649 85598506 -32264121 + L1PA8A LINE L1 3232 6127 -4 298 132 38 0 chr9 85598506 85598559 -32264068 - Charlie7 DNA MER1_type -1970 642 588 573 282 82 0 chr9 85598877 85599072 -32263555 + MIR SINE MIR 41 251 -11 180 395 45 51 chr9 85599138 85599452 -32263175 + L2 LINE L2 2664 2975 -339 1754 24 0 5 chr9 85599934 85600142 -32262485 - L1PA3 LINE L1 0 6155 5949 5682 11 18 0 chr9 85600142 85601083 -32261544 + L1PA3 LINE L1 5001 5954 -201 601 298 89 13 chr9 85601182 85601407 -32261220 + MIR SINE MIR 14 255 -7 3566 149 48 30 chr9 85601443 85601659 -32260968 + L1MB3 LINE L1 5435 5646 -537 2169 137 0 16 chr9 85601659 85601973 -32260654 + AluSx SINE Alu 3 311 -1 3566 149 48 30 chr9 85601973 85602489 -32260138 + L1MB3 LINE L1 5646 6180 -3 300 154 0 0 chr9 85602697 85602749 -32259878 + (CA)n Simple_repeat Simple_repeat 1 52 0 303 215 89 0 chr9 85603803 85603882 -32258745 - MIR SINE MIR -64 198 113 300 323 40 20 chr9 85604007 85604106 -32258521 - MIR SINE MIR -140 122 22 1662 289 64 39 chr9 85604992 85605928 -32256699 + L1MEd LINE L1 4 963 -5156 631 308 92 0 chr9 85606089 85606316 -32256311 - MIR SINE MIR -2 260 13 282 325 51 15 chr9 85607296 85607453 -32255174 - MIR SINE MIR -63 145 26 446 326 165 28 chr9 85607498 85607897 -32254730 + L3 LINE CR1 766 1219 -358 677 221 5 106 chr9 85607981 85608198 -32254429 + MIR SINE MIR 6 200 -62 367 209 0 77 chr9 85608493 85608584 -32254043 + MIR SINE MIR 60 143 -65 2461 125 8 0 chr9 85608745 85609106 -32253521 - THE1B LTR MaLR 0 364 1 243 88 0 0 chr9 85609413 85609447 -32253180 + (TG)n Simple_repeat Simple_repeat 2 35 0 239 299 26 113 chr9 85611229 85611460 -32251167 - L2 LINE L2 -109 3163 2953 180 324 44 0 chr9 85611561 85611629 -32250998 + L2 LINE L2 2995 3065 -248 1103 280 31 33 chr9 85611894 85612319 -32250308 + LTR16A LTR ERVL 21 444 -6 369 281 177 27 chr9 85612548 85612843 -32249784 + L1ME4a LINE L1 5535 5887 -234 2327 85 0 16 chr9 85613234 85613562 -32249065 - AluSc SINE Alu 0 309 1 515 329 65 17 chr9 85613856 85614087 -32248540 - MIR SINE MIR -12 250 9 371 273 164 11 chr9 85615039 85615222 -32247405 + MIR SINE MIR 20 230 -32 734 296 49 16 chr9 85616143 85616390 -32246237 - MIR SINE MIR -1 261 7 186 198 0 62 chr9 85616423 85616504 -32246123 + GA-rich Low_complexity Low_complexity 3 78 0 430 331 40 4 chr9 85616990 85617262 -32245365 + L1ME4a LINE L1 5553 5834 -287 1463 228 60 81 chr9 85618006 85618556 -32244071 - MLT1F1 LTR MaLR 0 624 2 185 352 99 0 chr9 85618868 85618939 -32243688 - MIR SINE MIR -165 97 20 192 329 53 13 chr9 85619322 85619398 -32243229 + L2 LINE L2 3232 3310 -3 257 254 116 0 chr9 85619439 85619577 -32243050 + MER113 DNA MER1_type? 17 170 -351 203 320 54 27 chr9 85619935 85620082 -32242545 - L2 LINE L2 0 3313 3163 294 341 132 17 chr9 85620218 85620505 -32242122 - L2 LINE L2 -342 2972 2653 309 185 0 0 chr9 85622085 85622139 -32240488 + Tigger5 DNA MER2_type 1 54 -2269 408 198 22 33 chr9 85622147 85622238 -32240389 + Tigger5 DNA MER2_type 2234 2323 0 327 277 143 17 chr9 85622525 85622644 -32239983 + L2 LINE L2 3139 3272 0 348 308 127 23 chr9 85622893 85623114 -32239513 - MER102a DNA MER1_type -40 290 47 377 297 26 3 chr9 85623281 85623421 -32239206 - MIR SINE MIR -62 146 3 299 85 21 0 chr9 85623808 85623855 -32238772 + (TG)n Simple_repeat Simple_repeat 1 48 0 1869 85 49 0 chr9 85623974 85624221 -32238406 - AluY SINE Alu -51 260 2 655 182 0 0 chr9 85624222 85624343 -32238284 - MLT1A1 LTR MaLR -210 155 35 1420 105 13 2 chr9 85624343 85624596 -32238031 - AluSq SINE Alu 0 306 1 279 136 0 0 chr9 85624596 85624639 -32237988 - MLT1A1 LTR MaLR -331 43 1 273 29 0 0 chr9 85625142 85625176 -32237451 + (CA)n Simple_repeat Simple_repeat 1 34 0 623 228 46 213 chr9 85625332 85625943 -32236684 - L2 LINE L2 0 3313 2805 558 0 0 0 chr9 85627122 85627184 -32235443 + (TG)n Simple_repeat Simple_repeat 2 63 0 257 344 31 49 chr9 85627204 85627428 -32235199 + L3b LINE CR1 1361 1580 -3 254 289 0 36 chr9 85627538 85627621 -32235006 - MIR SINE MIR -87 121 42 366 23 0 0 chr9 85628211 85628254 -32234373 + (CA)n Simple_repeat Simple_repeat 2 44 0 233 304 30 0 chr9 85628254 85628422 -32234205 + (TA)n Simple_repeat Simple_repeat 1 173 0 183 205 0 0 chr9 85628437 85628476 -32234151 + (TATG)n Simple_repeat Simple_repeat 4 42 0 232 93 0 0 chr9 85628476 85628519 -32234108 + LTR66 LTR ERVL 394 436 -174 1092 229 98 103 chr9 85628652 85628692 -32233935 - MLT2B1 LTR ERVL 0 520 481 312 27 0 0 chr9 85628692 85628729 -32233898 + (TG)n Simple_repeat Simple_repeat 1 37 0 1092 229 98 103 chr9 85628729 85628995 -32233632 - MLT2B1 LTR ERVL -39 481 216 2547 61 0 6 chr9 85628995 85629308 -32233319 - AluY SINE Alu 0 311 1 1092 229 98 103 chr9 85629308 85629523 -32233104 - MLT2B1 LTR ERVL -304 216 1 194 332 182 19 chr9 85629624 85629937 -32232690 - L3 LINE CR1 -741 836 473 418 329 181 0 chr9 85630026 85630236 -32232391 - L3 LINE CR1 -1135 442 195 305 373 0 0 chr9 85632382 85632492 -32230135 + MIR3 SINE MIR 95 204 -4 29036 47 3 0 chr9 85632683 85636878 -32225749 + L1P2 LINE L1 1561 5766 -388 1804 205 0 16 chr9 85637013 85637383 -32225244 - MLT1A1 LTR MaLR 0 365 2 189 0 0 0 chr9 85637804 85637825 -32224802 + (T)n Simple_repeat Simple_repeat 1 21 0 249 261 31 0 chr9 85638000 85638065 -32224562 - MIR SINE MIR -2 260 194 226 268 24 12 chr9 85638066 85638148 -32224479 + (CATATA)n Simple_repeat Simple_repeat 6 88 0 293 318 216 7 chr9 85638184 85638332 -32224295 - MIR SINE MIR -58 204 26 240 324 120 9 chr9 85638345 85638453 -32224174 - L2 LINE L2 -17 3255 3136 301 371 65 16 chr9 85638640 85638888 -32223739 - L2 LINE L2 -454 2860 2601 360 214 27 45 chr9 85639170 85639282 -32223345 - MIR SINE MIR -113 149 40 301 288 60 7 chr9 85639291 85639442 -32223185 + MIR SINE MIR 23 184 -63 611 286 35 90 chr9 85640503 85640870 -32221757 - L2 LINE L2 0 3272 2926 224 324 219 38 chr9 85640944 85641231 -32221396 - L2 LINE L2 -485 2829 2491 481 279 29 35 chr9 85641383 85641555 -32221072 + MIR3 SINE MIR 30 200 -8 332 328 25 21 chr9 85642243 85642401 -32220226 - MIR SINE MIR -58 150 20 493 241 88 84 chr9 85642553 85642643 -32219984 - L1ME LINE L1 -340 5781 5693 932 268 28 8 chr9 85642643 85642897 -32219730 + MIR SINE MIR 4 262 0 493 241 88 84 chr9 85642897 85643055 -32219572 - L1ME LINE L1 -428 5693 5532 387 274 51 8 chr9 85643550 85643667 -32218960 + MIR3 SINE MIR 53 174 -34 879 179 44 105 chr9 85643697 85643926 -32218701 - MER20 DNA MER1_type 0 219 5 2141 132 0 0 chr9 85645378 85645673 -32216954 - AluSx SINE Alu -17 295 1 30 27 0 0 chr9 85645695 85645732 -32216895 + AT_rich Low_complexity Low_complexity 1 37 0 1013 209 68 0 chr9 85646796 85647016 -32215611 - MIR SINE MIR 0 262 28 188 314 171 0 chr9 85647346 85647451 -32215176 - MIR SINE MIR 0 262 140 509 205 26 0 chr9 85647457 85647574 -32215053 + L1M4 LINE L1 4303 4422 -1724 538 209 0 0 chr9 85647577 85647692 -32214935 + L1M4 LINE L1 5099 5213 -933 300 269 62 41 chr9 85647931 85648076 -32214551 + MIR3 SINE MIR 59 206 -2 2423 84 0 3 chr9 85648082 85648392 -32214235 + AluSx SINE Alu 1 309 -3 2441 70 0 10 chr9 85648611 85648925 -32213702 - AluY SINE Alu 0 311 1 3376 108 4 0 chr9 85649017 85649478 -32213149 - L1PA13 LINE L1 -2 6161 5699 3533 302 110 34 chr9 85649520 85651449 -32211178 - L2 LINE L2 -337 2977 903 385 222 71 24 chr9 85651454 85651580 -32211047 + MIR SINE MIR 66 197 -65 512 286 86 45 chr9 85653199 85653444 -32209183 + MIR SINE MIR 5 259 -3 236 215 93 159 chr9 85653547 85653761 -32208866 - MIR SINE MIR -6 256 57 745 260 69 17 chr9 85655629 85655860 -32206767 - MIR SINE MIR 0 262 20 198 309 0 0 chr9 85658155 85658210 -32204417 + MIR SINE MIR 47 101 -161 470 328 94 6 chr9 85658694 85658923 -32203704 - MIR SINE MIR -6 256 7 5672 111 5 0 chr9 85658972 85659781 -32202846 + L1P LINE L1 1 813 -5333 4560 52 9 7 chr9 85659903 85660459 -32202168 + L1PA5 LINE L1 5597 6153 -1 225 0 0 0 chr9 85660517 85660542 -32202085 + (A)n Simple_repeat Simple_repeat 1 25 0 292 352 0 0 chr9 85660544 85660649 -32201978 + (TAGA)n Simple_repeat Simple_repeat 2 106 0 1603 292 46 22 chr9 85661301 85661801 -32200826 + MLT2F LTR ERVL 17 528 -135 843 234 136 0 chr9 85661826 85662010 -32200617 + MER58A DNA MER1_type 10 218 -6 384 169 0 0 chr9 85662016 85662081 -32200546 + MLT2F LTR ERVL 531 595 -68 318 212 0 42 chr9 85662086 85662204 -32200423 + (TATG)n Simple_repeat Simple_repeat 2 114 0 205 296 14 0 chr9 85662445 85662516 -32200111 + (TAAA)n Simple_repeat Simple_repeat 2 73 0 206 261 0 0 chr9 85662979 85663025 -32199602 + MIR SINE MIR 88 133 -129 651 110 0 10 chr9 85663146 85663246 -32199381 + AluSg/x SINE Alu 211 309 0 198 303 45 0 chr9 85663357 85663423 -32199204 - MIR SINE MIR -5 257 189 710 292 41 14 chr9 85663634 85663860 -32198767 - MIR SINE MIR -16 246 16 281 268 189 7 chr9 85664065 85664218 -32198409 - MIR3 SINE MIR -20 188 8 351 44 0 0 chr9 85664283 85664328 -32198299 + (TG)n Simple_repeat Simple_repeat 1 45 0 441 0 0 0 chr9 85666033 85666082 -32196545 + (GA)n Simple_repeat Simple_repeat 1 49 0 184 278 28 14 chr9 85666844 85666916 -32195711 + L2 LINE L2 2987 3059 -213 471 219 0 10 chr9 85667078 85667174 -32195453 - MER81 DNA DNA 0 114 20 208 167 48 0 chr9 85667178 85667220 -32195407 + L2 LINE L2 3229 3272 0 2152 90 7 0 chr9 85667232 85667540 -32195087 + AluSx SINE Alu 1 310 0 714 266 91 20 chr9 85667941 85668308 -32194319 + L2 LINE L2 2776 3169 -144 634 187 18 137 chr9 85668324 85668543 -32194084 + MER3 DNA MER1_type 10 202 -7 246 188 21 0 chr9 85668509 85668557 -32194070 - MER3 DNA MER1_type -120 89 41 * 189 227 0 23 chr9 85668603 85668647 -32193980 + MIR SINE MIR 210 252 -10 * 197 239 22 0 chr9 85668611 85668657 -32193970 + L2 LINE L2 3221 3267 -5 217 290 29 14 chr9 85669293 85669362 -32193265 - L2 LINE L2 -1 3312 3243 282 325 0 0 chr9 85669375 85669458 -32193169 + MIR SINE MIR 180 262 0 213 235 59 39 chr9 85669478 85669580 -32193047 - L2 LINE L2 -105 3208 3105 278 346 64 38 chr9 85671848 85672221 -32190406 - L2 LINE L2 -339 2975 2593 441 316 8 8 chr9 85673808 85673941 -32188686 - MIR3 SINE MIR -62 146 14 3457 81 0 59 chr9 85674101 85674161 -32188466 - MLT2A1 LTR ERVL 0 444 382 207 0 0 0 chr9 85674161 85674184 -32188443 + (TC)n Simple_repeat Simple_repeat 2 24 0 * 219 88 0 0 chr9 85674183 85674217 -32188410 + (TA)n Simple_repeat Simple_repeat 1 34 0 3457 81 0 59 chr9 85674184 85674628 -32187999 - MLT2A1 LTR ERVL -62 382 1 212 237 0 51 chr9 85674713 85674772 -32187855 - L2 LINE L2 -1 3271 3216 484 303 7 7 chr9 85675388 85675533 -32187094 + MIR SINE MIR 17 161 -101 280 328 70 8 chr9 85675621 85675749 -32186878 + L2 LINE L2 3137 3272 0 1087 186 34 5 chr9 85677186 85677390 -32185237 + MER20 DNA MER1_type 4 213 -6 258 32 0 0 chr9 85677544 85677575 -32185052 + (T)n Simple_repeat Simple_repeat 1 31 0 1045 201 34 5 chr9 85678147 85678351 -32184276 + MER20 DNA MER1_type 4 213 -6 279 0 0 0 chr9 85678506 85678537 -32184090 + (T)n Simple_repeat Simple_repeat 1 31 0 189 288 41 119 chr9 85678860 85679155 -32183472 + L2 LINE L2 2811 3082 -190 443 275 41 23 chr9 85679407 85679578 -32183049 + GA-rich Low_complexity Low_complexity 2 175 0 22 35 0 0 chr9 85681251 85681280 -32181347 + AT_rich Low_complexity Low_complexity 1 29 0 973 247 90 44 chr9 85682689 85683078 -32179549 + MLT1L LTR MaLR 169 575 -40 834 155 85 8 chr9 85683084 85683244 -32179383 - AluSc SINE Alu 0 309 140 249 310 0 35 chr9 85683832 85683919 -32178708 - L2 LINE L2 0 3313 3230 190 244 0 0 chr9 85683922 85683967 -32178660 - L2 LINE L2 -1 3271 3227 415 317 209 35 chr9 85684095 85684852 -32177775 - L2 LINE L2 -285 2987 2104 1425 217 13 23 chr9 85684867 85684940 -32177687 - Zaphod DNA AcHobo -78 3953 3881 2055 103 46 0 chr9 85684940 85685221 -32177406 + AluSx SINE Alu 1 294 -18 438 20 0 0 chr9 85685222 85685273 -32177354 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 1425 217 13 23 chr9 85685273 85685661 -32176966 - Zaphod DNA AcHobo -149 3882 3426 886 263 40 0 chr9 85685697 85685921 -32176706 - Zaphod DNA AcHobo -3792 239 7 1985 195 45 8 chr9 85686107 85686507 -32176120 + L1MB8 LINE L1 5764 6178 0 188 299 15 45 chr9 85687499 85687566 -32175061 - MIR SINE MIR -102 160 96 241 268 0 18 chr9 85687672 85687728 -32174899 + L2 LINE L2 3255 3309 -4 361 376 0 6 chr9 85688265 85688443 -32174184 + MIR SINE MIR 65 241 -21 213 154 0 0 chr9 85688451 85688490 -32174137 + (TTA)n Simple_repeat Simple_repeat 2 40 0 411 21 0 0 chr9 85688922 85688970 -32173657 + (CA)n Simple_repeat Simple_repeat 2 49 0 2493 186 75 88 chr9 85690019 85690681 -32171946 - MLT1E1 LTR MaLR 0 654 1 235 226 9 75 chr9 85690785 85690891 -32171736 + MIR SINE MIR 164 262 0 315 171 66 26 chr9 85691051 85691127 -32171500 - MIR SINE MIR -110 152 74 589 110 0 0 chr9 85691377 85691450 -32171177 + AluSp SINE Alu 51 123 -190 361 264 50 117 chr9 85692152 85692391 -32170236 + L3 LINE CR1 1354 1576 -1 191 225 0 0 chr9 85692403 85692443 -32170184 - L2 LINE L2 -3 3269 3230 1735 156 41 20 chr9 85692464 85692759 -32169868 + AluSx SINE Alu 1 301 -11 645 158 7 14 chr9 85692762 85692908 -32169719 + GA-rich Low_complexity Low_complexity 4 148 0 478 323 45 14 chr9 85693003 85693226 -32169401 - Charlie8 DNA MER1_type -2152 265 36 191 284 0 62 chr9 85693712 85693793 -32168834 - L2 LINE L2 -926 2388 2313 717 286 41 14 chr9 85694709 85694929 -32167698 + MIR SINE MIR 11 236 -26 4246 116 67 0 chr9 85694952 85695547 -32167080 - MER41B LTR ERV1 0 635 1 259 313 12 0 chr9 85695611 85695694 -32166933 - L2 LINE L2 -3 3310 3227 386 183 86 86 chr9 85696975 85697172 -32165455 + L2 LINE L2 3112 3308 -5 763 225 64 0 chr9 85697189 85697362 -32165265 - MER3 DNA MER1_type -25 184 1 2145 117 7 10 chr9 85697432 85697730 -32164897 + AluSq SINE Alu 1 297 -16 1085 98 0 179 chr9 85697978 85698212 -32164415 - 7SK RNA RNA 0 193 2 436 286 117 35 chr9 85698212 85698383 -32164244 + MIR SINE MIR 18 202 -60 183 200 0 0 chr9 85698617 85698647 -32163980 + MIR SINE MIR 118 147 -61 214 343 88 0 chr9 85698879 85698981 -32163646 - L2 LINE L2 -20 3252 3142 545 348 98 30 chr9 85699135 85699666 -32162961 - L2 LINE L2 -421 2893 2327 2125 92 92 0 chr9 85701299 85701582 -32161045 + AluSq SINE Alu 1 309 -4 571 233 57 6 chr9 85701682 85701841 -32160786 - MIR SINE MIR -93 169 3 557 292 121 58 chr9 85702352 85702767 -32159860 + L2 LINE L2 2853 3295 -18 228 111 0 0 chr9 85702772 85702808 -32159819 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 215 289 100 22 chr9 85703137 85703227 -32159400 - MIR SINE MIR -101 161 65 262 295 155 30 chr9 85704812 85705012 -32157615 - L1ME LINE L1 -286 5835 5611 526 364 26 60 chr9 85705941 85706589 -32156038 + L2 LINE L2 2128 2753 -561 333 0 0 0 chr9 85706616 85706653 -32155974 + (TG)n Simple_repeat Simple_repeat 2 38 0 877 228 0 0 chr9 85707207 85707374 -32155253 + MLT1B LTR MaLR 1 167 -223 386 304 32 32 chr9 85707437 85707654 -32154973 - L2 LINE L2 -608 2706 2490 1995 214 78 40 chr9 85708028 85708493 -32154134 + MLT2B1 LTR ERVL 1 488 -32 477 0 0 0 chr9 85708493 85708546 -32154081 + (CA)n Simple_repeat Simple_repeat 2 54 0 1995 214 78 40 chr9 85708546 85708581 -32154046 + MLT2B1 LTR ERVL 488 520 0 238 264 0 0 chr9 85708587 85708640 -32153987 + CT-rich Low_complexity Low_complexity 1 53 0 337 389 63 63 chr9 85708640 85708941 -32153686 - L2 LINE L2 -9 3263 2963 21 0 0 0 chr9 85709170 85709191 -32153436 + AT_rich Low_complexity Low_complexity 1 21 0 225 373 0 29 chr9 85709750 85709852 -32152775 - MIR3 SINE MIR -1 207 109 721 170 50 22 chr9 85709989 85710171 -32152456 - MER53 DNA DNA -2 187 1 259 258 30 30 chr9 85710530 85710596 -32152031 - MIR SINE MIR -78 130 65 264 188 47 31 chr9 85710802 85710866 -32151761 + MLT1K LTR MaLR 169 233 -355 256 220 0 0 chr9 85711110 85711160 -32151467 + MLT1K LTR MaLR 537 586 -2 270 357 18 0 chr9 85711452 85711570 -32151057 - MIR SINE MIR -65 143 33 279 300 1 84 chr9 85711771 85711929 -32150698 + MER5A DNA MER1_type 7 164 -25 573 313 98 39 chr9 85712105 85712440 -32150187 - L2 LINE L2 -2 3270 2916 831 182 6 33 chr9 85712472 85712653 -32149974 - MIR SINE MIR 0 262 87 325 305 137 0 chr9 85712726 85712821 -32149806 - MIR3 SINE MIR -49 159 52 188 330 97 19 chr9 85713039 85713142 -32149485 + MIR3 SINE MIR 92 202 -6 24 32 0 0 chr9 85713600 85713631 -32148996 + AT_rich Low_complexity Low_complexity 1 31 0 2351 203 19 68 chr9 85714151 85714786 -32147841 + L1MC4 LINE L1 6514 7117 -925 506 164 0 0 chr9 85714786 85714859 -32147768 - MER58A DNA MER1_type -31 76 4 366 352 28 7 chr9 85714868 85715013 -32147614 - L2 LINE L2 -559 2755 2608 203 156 0 0 chr9 85715507 85715539 -32147088 + A-rich Low_complexity Low_complexity 3 34 0 1288 113 11 5 chr9 85716245 85716430 -32146197 - AluSx SINE Alu -116 196 11 2286 97 7 0 chr9 85716544 85716853 -32145774 - AluY SINE Alu 0 311 1 370 291 10 0 chr9 85717911 85718014 -32144613 + MIR SINE MIR 30 133 -75 1892 201 91 44 chr9 85718015 85718497 -32144130 + MLT1D LTR MaLR 1 505 0 941 150 7 0 chr9 85719436 85719576 -32143051 + AluSq/x SINE Alu 1 141 -172 1381 88 0 0 chr9 85719676 85719847 -32142780 - AluSq SINE Alu -142 171 1 200 35 35 0 chr9 85719862 85719891 -32142736 + (TG)n Simple_repeat Simple_repeat 1 30 0 417 174 14 0 chr9 85720193 85720262 -32142365 + MER94 DNA DNA 5 74 -60 318 281 111 37 chr9 85720305 85720440 -32142187 - L2 LINE L2 -1 3271 3127 677 291 81 80 chr9 85720440 85721005 -32141622 - L2 LINE L2 -3 3310 2733 304 338 226 24 chr9 85721875 85722251 -32140376 + L3 LINE CR1 1081 1532 -45 778 247 72 58 chr9 85722897 85723189 -32139438 - MLT1I LTR MaLR 0 409 114 474 324 93 6 chr9 85724243 85724425 -32138202 - MIR SINE MIR -35 227 30 213 268 0 0 chr9 85724709 85724750 -32137877 - MER91 DNA MER1_type -99 41 1 664 339 81 51 chr9 85725051 85725662 -32136965 - L2 LINE L2 -229 3043 2387 2144 119 10 10 chr9 85725662 85725965 -32136662 + AluSq SINE Alu 1 303 -10 664 339 81 51 chr9 85725965 85726439 -32136188 - L2 LINE L2 -885 2387 1929 351 319 239 5 chr9 85726672 85726860 -32135767 + MIR SINE MIR 19 250 -12 192 301 78 48 chr9 85726885 85726988 -32135639 + L3b LINE CR1 1475 1580 -3 516 252 28 0 chr9 85727141 85727248 -32135379 + MER81 DNA DNA 1 110 -4 446 231 73 35 chr9 85728333 85728589 -32134038 + L1M4 LINE L1 5170 5440 -738 21 36 0 0 chr9 85728597 85728625 -32134002 + AT_rich Low_complexity Low_complexity 1 28 0 435 276 72 33 chr9 85728871 85729023 -32133604 + MIR SINE MIR 24 181 -81 647 238 156 51 chr9 85729200 85729456 -32133171 + MER102a DNA MER1_type 45 327 -3 4385 70 2 18 chr9 85729955 85730512 -32132115 + L1PA10 LINE L1 5606 6153 -15 381 43 0 0 chr9 85730625 85730672 -32131955 + (TG)n Simple_repeat Simple_repeat 1 47 0 241 307 72 33 chr9 85730919 85731072 -32131555 + MIR SINE MIR 60 218 -44 198 286 31 51 chr9 85731096 85731194 -32131433 - MIR3 SINE MIR -48 160 65 660 179 29 35 chr9 85731298 85731471 -32131156 + Charlie4 DNA MER1_type 1774 1945 -16 644 204 67 13 chr9 85731535 85731686 -32130941 + MER20 DNA MER1_type 55 219 0 2239 113 10 0 chr9 85732263 85732564 -32130063 - AluSq SINE Alu -9 304 1 235 325 12 0 chr9 85732941 85733021 -32129606 + L2 LINE L2 3233 3313 0 195 344 74 31 chr9 85733042 85733205 -32129422 - MIR SINE MIR -82 180 11 404 241 0 0 chr9 85733327 85733406 -32129221 + MER103 DNA DNA 18 96 -70 206 0 0 65 chr9 85733703 85733734 -32128893 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 268 215 0 31 chr9 85734263 85734328 -32128299 - tRNA-Arg-AGA tRNA tRNA -12 64 2 790 276 105 0 chr9 85734569 85734797 -32127830 + MIR SINE MIR 3 254 -8 2225 118 0 0 chr9 85734804 85735100 -32127527 + AluSg SINE Alu 2 297 -13 278 356 35 0 chr9 85735115 85735230 -32127397 + MIR SINE MIR 74 192 -70 545 281 91 66 chr9 85735503 85736054 -32126573 + L2 LINE L2 2488 3060 -253 352 180 146 11 chr9 85736071 85736160 -32126467 + MIR SINE MIR 153 253 -9 305 267 42 42 chr9 85736283 85736403 -32126224 + L2 LINE L2 3153 3272 0 282 73 0 0 chr9 85736845 85736886 -32125741 + (CAA)n Simple_repeat Simple_repeat 2 42 0 231 125 0 0 chr9 85737413 85737453 -32125174 + (A)n Simple_repeat Simple_repeat 1 40 0 231 239 141 54 chr9 85737938 85738030 -32124597 - MIR SINE MIR -117 145 46 315 263 53 11 chr9 85738654 85738749 -32123878 + MIR SINE MIR 114 212 -50 233 296 37 0 chr9 85739163 85739244 -32123383 - L2 LINE L2 0 3313 3230 225 326 31 62 chr9 85739720 85739849 -32122778 + L2 LINE L2 3143 3267 -5 501 289 86 13 chr9 85740082 85740234 -32122393 + MIR3 SINE MIR 20 182 -26 2747 97 11 0 chr9 85741261 85741632 -32120995 + THE1C LTR MaLR 1 375 0 1006 97 0 0 chr9 85742213 85742357 -32120270 + L1MA2 LINE L1 6161 6304 0 21 0 0 0 chr9 85742357 85742378 -32120249 + AT_rich Low_complexity Low_complexity 1 21 0 318 280 76 42 chr9 85742758 85742876 -32119751 - MIR SINE MIR -55 153 32 3941 31 6 19 chr9 85743964 85744447 -32118180 - L1PA5 LINE L1 -11 6143 5667 2139 128 7 3 chr9 85745448 85745746 -32116881 - AluSq SINE Alu -14 299 1 26 0 0 0 chr9 85746014 85746040 -32116587 + AT_rich Low_complexity Low_complexity 1 26 0 400 347 97 17 chr9 85746264 85746552 -32116075 - L3b LINE CR1 -13 1570 1260 295 297 99 3 chr9 85748280 85748466 -32114161 - MIR SINE MIR -10 252 4 329 291 96 29 chr9 85748478 85749217 -32113410 + L1ME4a LINE L1 5193 6049 -72 348 260 13 13 chr9 85750342 85750419 -32112208 - MIR SINE MIR -99 109 33 396 247 65 102 chr9 85751592 85751867 -32110760 + L1ME4a LINE L1 5767 6031 -90 329 314 63 102 chr9 85752122 85752456 -32110171 + L2 LINE L2 2945 3265 -7 433 340 26 0 chr9 85753003 85753159 -32109468 - MIR SINE MIR -54 208 49 259 283 88 71 chr9 85753387 85753500 -32109127 - L2 LINE L2 0 3272 3158 955 237 69 8 chr9 85753589 85753834 -32108793 - MIR SINE MIR -2 260 1 603 289 94 8 chr9 85754490 85754850 -32107777 - L1ME LINE L1 -343 5778 5388 22 0 0 0 chr9 85754990 85755012 -32107615 + AT_rich Low_complexity Low_complexity 1 22 0 1235 223 61 114 chr9 85755228 85755555 -32107072 - L1ME1 LINE L1 -2 6164 5841 299 43 0 22 chr9 85755555 85755601 -32107026 - MADE1 DNA Mariner -34 46 2 1235 223 61 114 chr9 85755601 85755886 -32106741 - L1ME4a LINE L1 -325 5841 5542 252 292 79 32 chr9 85755886 85756102 -32106525 + L1ME4a LINE L1 5838 6063 -58 678 269 76 44 chr9 85757158 85757407 -32105220 + MIR SINE MIR 6 262 0 854 311 180 24 chr9 85757755 85758304 -32104323 - L3 LINE CR1 -13 1564 930 653 236 75 121 chr9 85758343 85758383 -32104244 - MLT2B1 LTR ERVL 0 520 480 321 26 0 0 chr9 85758383 85758421 -32104206 + (TG)n Simple_repeat Simple_repeat 2 39 0 653 236 75 121 chr9 85758421 85758686 -32103941 - MLT2B1 LTR ERVL -40 480 234 2384 89 0 6 chr9 85758686 85758999 -32103628 - AluY SINE Alu 0 311 1 653 236 75 121 chr9 85758999 85759081 -32103546 - MLT2B1 LTR ERVL -286 234 150 339 235 98 0 chr9 85760485 85760587 -32102040 - MIR SINE MIR -33 229 118 400 278 28 0 chr9 85760853 85760961 -32101666 + L2 LINE L2 3181 3291 -22 2165 106 10 7 chr9 85760963 85761256 -32101371 - AluSx SINE Alu -18 294 1 360 244 28 20 chr9 85761721 85761826 -32100801 - MIR SINE MIR -62 146 41 1596 175 25 35 chr9 85761895 85762213 -32100414 + AluJb SINE Alu 1 315 0 21 36 0 0 chr9 85762753 85762781 -32099846 + AT_rich Low_complexity Low_complexity 1 28 0 1289 141 49 71 chr9 85763696 85764022 -32098605 - MER33 DNA MER1_type -5 319 1 411 269 16 67 chr9 85765100 85765293 -32097334 + MIR SINE MIR 34 216 -46 316 293 75 15 chr9 85766056 85766189 -32096438 + MIR SINE MIR 51 191 -71 218 204 68 0 chr9 85766434 85766478 -32096149 - L3 LINE CR1 -15 1562 1516 * 262 208 19 0 chr9 85766444 85766497 -32096130 - MIR3 SINE MIR -31 177 124 2017 170 38 38 chr9 85766720 85766903 -32095724 + MSTA LTR MaLR 1 183 -245 1727 113 21 101 chr9 85766903 85767231 -32095396 + AluYb8 SINE Alu 1 302 -16 2017 170 38 38 chr9 85767231 85767464 -32095163 + MSTA LTR MaLR 182 417 -11 420 280 99 13 chr9 85767879 85768111 -32094516 - L2 LINE L2 -194 3078 2827 610 307 61 0 chr9 85768203 85768415 -32094212 + MIR SINE MIR 8 232 -30 1423 227 76 17 chr9 85768705 85769049 -32093578 + MLT1A1 LTR MaLR 2 365 0 542 147 32 11 chr9 85769192 85769287 -32093340 + Charlie3 DNA MER1_type 2610 2706 -4 495 59 0 0 chr9 85770830 85770898 -32091729 + L1PA6 LINE L1 6084 6151 -3 496 96 0 36 chr9 85771347 85771430 -32091197 - MADE1 DNA Mariner 0 80 1 3566 178 34 43 chr9 85771544 85772864 -32089763 + L1MB7 LINE L1 4858 6165 -19 262 273 0 15 chr9 85772880 85773012 -32089615 + GA-rich Low_complexity Low_complexity 1 130 0 244 238 25 38 chr9 85773542 85773622 -32089005 + L2 LINE L2 3194 3272 0 2882 151 34 4 chr9 85773688 85774184 -32088443 - L1PA16 LINE L1 -9 6157 5647 441 276 47 8 chr9 85775065 85775192 -32087435 - MIR SINE MIR -117 145 14 378 341 71 83 chr9 85776324 85776772 -32085855 - L2 LINE L2 0 3272 2830 224 222 21 28 chr9 85776976 85777120 -32085507 + (TA)n Simple_repeat Simple_repeat 2 144 0 226 377 22 7 chr9 85777408 85777546 -32085081 + L1ME1 LINE L1 296 435 -5961 1970 118 26 36 chr9 85777569 85777873 -32084754 + AluSx SINE Alu 1 301 -11 267 54 0 0 chr9 85778160 85778197 -32084430 + (CA)n Simple_repeat Simple_repeat 2 38 0 261 139 0 0 chr9 85778197 85778240 -32084387 + (GGGA)n Simple_repeat Simple_repeat 3 45 0 1287 277 67 63 chr9 85778256 85779378 -32083249 + L1ME1 LINE L1 747 1876 -4520 2288 92 3 3 chr9 85779378 85779681 -32082946 + AluSx SINE Alu 10 312 0 1287 277 67 63 chr9 85779681 85779813 -32082814 + L1ME1 LINE L1 1876 2006 -4390 1131 229 72 2 chr9 85779866 85780298 -32082329 + L1ME1 LINE L1 2901 3362 -2853 598 207 57 5 chr9 85780417 85780610 -32082017 + L1ME1 LINE L1 5173 5375 -840 784 276 45 39 chr9 85780623 85780935 -32081692 - LTR16B LTR ERVL -26 438 125 2503 237 83 10 chr9 85781015 85781725 -32080902 + L1ME1 LINE L1 5369 6130 -105 216 0 0 0 chr9 85781784 85781808 -32080819 + (CA)n Simple_repeat Simple_repeat 2 25 0 2379 57 3 10 chr9 85783025 85783325 -32079302 - AluY SINE Alu -9 302 5 28 48 0 0 chr9 85783743 85783785 -32078842 + AT_rich Low_complexity Low_complexity 1 42 0 845 286 26 20 chr9 85784581 85784930 -32077697 - L1ME3A LINE L1 -247 5923 5573 840 292 131 49 chr9 85784954 85785583 -32077044 + L2 LINE L2 2270 3014 -299 3064 109 43 0 chr9 85785583 85786076 -32076551 - L1MA5A LINE L1 0 6297 5784 840 292 131 49 chr9 85786076 85786403 -32076224 + L2 LINE L2 3014 3313 0 282 340 48 0 chr9 85786645 85786748 -32075879 + L2 LINE L2 3111 3218 -54 350 279 75 33 chr9 85787208 85787448 -32075179 - L1MC4 LINE L1 -2 8040 7791 273 265 54 29 chr9 85787548 85787764 -32074863 - L1MC5 LINE L1 -393 7415 7285 2517 42 0 6 chr9 85787928 85788249 -32074378 - L1PA4 LINE L1 -1203 4943 4623 7364 39 0 1 chr9 85788249 85789455 -32073172 + L1PA4 LINE L1 4948 6152 -3 2062 122 4 0 chr9 85789803 85790081 -32072546 - AluSp SINE Alu -34 279 1 1077 152 6 0 chr9 85790416 85790581 -32072046 + AluSc SINE Alu 1 166 -143 323 247 221 13 chr9 85840591 85840749 -32021878 + MIR SINE MIR 60 250 -12 193 231 123 0 chr9 85840947 85841012 -32021615 - L2 LINE L2 -1 3271 3199 375 302 111 17 chr9 85843844 85844016 -32018611 + MIR SINE MIR 69 256 -6 206 302 156 10 chr9 85844657 85844753 -32017874 + L2 LINE L2 3149 3258 -14 251 331 83 0 chr9 85846590 85846711 -32015916 - MER5A DNA MER1_type -41 148 18 183 42 0 0 chr9 85847178 85847202 -32015425 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 308 303 99 53 chr9 85849071 85849223 -32013404 - MIR3 SINE MIR -34 174 16 459 287 37 6 chr9 85849227 85849391 -32013236 + MER117 DNA MER1_type 1 169 -28 274 372 35 0 chr9 85849959 85850072 -32012555 - MIR3 SINE MIR -23 185 69 199 279 0 0 chr9 85850450 85850493 -32012134 + L2 LINE L2 3213 3255 -17 2655 27 0 0 chr9 85850496 85850795 -32011832 - AluY SINE Alu -12 299 1 380 296 78 9 chr9 85852097 85852212 -32010415 - L2 LINE L2 -1 3271 3149 387 60 0 0 chr9 85855131 85855181 -32007446 + (CA)n Simple_repeat Simple_repeat 1 50 0 274 267 67 11 chr9 85855637 85855727 -32006900 - MIR SINE MIR -84 124 30 465 258 12 60 chr9 85856176 85856343 -32006284 - MIR SINE MIR -70 192 34 614 254 63 16 chr9 85856482 85856671 -32005956 - MIR SINE MIR -63 199 2 195 392 0 10 chr9 85856913 85857015 -32005612 - L2 LINE L2 -533 2781 2681 1014 162 68 145 chr9 85857107 85857458 -32005169 + MER33 DNA MER1_type 1 324 0 185 322 99 13 chr9 85857775 85857927 -32004700 + L2 LINE L2 2501 2665 -649 195 269 39 0 chr9 85858096 85858148 -32004479 - MIR SINE MIR -91 171 118 196 339 48 0 chr9 85858672 85858734 -32003893 + L2 LINE L2 3205 3269 -3 322 299 34 49 chr9 85859578 85859782 -32002845 - L1ME4a LINE L1 -72 6049 5849 266 243 14 0 chr9 85860458 85860532 -32002095 + HsTC2 DNA Tc2 1 75 -1823 355 359 36 16 chr9 85860640 85860832 -32001795 - L2 LINE L2 -45 3227 3032 895 146 24 146 chr9 85860832 85861079 -32001548 + MER20 DNA MER1_type 2 218 -1 493 305 71 13 chr9 85861417 85861620 -32001007 - MIR SINE MIR -30 232 19 198 0 0 0 chr9 85861648 85861670 -32000957 + (GA)n Simple_repeat Simple_repeat 1 22 0 195 42 0 0 chr9 85861671 85861695 -32000932 + (TG)n Simple_repeat Simple_repeat 1 24 0 27 0 0 0 chr9 85862274 85862301 -32000326 + AT_rich Low_complexity Low_complexity 1 27 0 15176 194 45 16 chr9 85862301 85862658 -31999969 - L1PB1 LINE L1 0 6867 6522 450 0 0 0 chr9 85862658 85862708 -31999919 + (TG)n Simple_repeat Simple_repeat 2 51 0 15176 194 45 16 chr9 85862708 85868867 -31993760 - L1PB1 LINE L1 -345 6522 6 238 360 87 0 chr9 85869285 85869457 -31993170 - L1M4 LINE L1 -1929 4217 4031 602 308 125 47 chr9 85869884 85871094 -31991533 - L1M4 LINE L1 -2699 3447 2144 339 25 0 0 chr9 85871357 85871397 -31991230 + (TA)n Simple_repeat Simple_repeat 2 41 0 297 0 0 0 chr9 85871401 85871434 -31991193 + (T)n Simple_repeat Simple_repeat 1 33 0 2104 123 3 3 chr9 85871649 85871941 -31990686 - AluSx SINE Alu 0 312 21 718 298 80 40 chr9 85872084 85872560 -31990067 - HAL1b LINE L1 -581 767 273 204 40 0 0 chr9 85872612 85872637 -31989990 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 216 0 0 0 chr9 85873061 85873085 -31989542 + (T)n Simple_repeat Simple_repeat 1 24 0 992 210 28 0 chr9 85874133 85874314 -31988313 - MER5A DNA MER1_type -3 186 1 315 189 42 116 chr9 85875355 85875450 -31987177 + MIR3 SINE MIR 91 178 -30 201 264 69 69 chr9 85876114 85876201 -31986426 - L2 LINE L2 -41 3231 3145 2098 122 7 14 chr9 85876304 85876600 -31986027 - AluSx SINE Alu -18 294 1 804 195 124 12 chr9 85876984 85877153 -31985474 - MER20 DNA MER1_type -6 213 26 221 289 126 52 chr9 85877294 85877429 -31985198 - L2 LINE L2 -1 3312 3168 195 42 0 0 chr9 85877900 85877924 -31984703 + (T)n Simple_repeat Simple_repeat 1 24 0 2174 98 3 10 chr9 85880532 85880873 -31981754 - AluSg SINE Alu 0 310 1 204 309 11 0 chr9 85881022 85881116 -31981511 + (TATATG)n Simple_repeat Simple_repeat 2 96 0 322 247 171 35 chr9 85888237 85888407 -31974220 + L1M2 LINE L1 532 724 -6125 212 132 53 0 chr9 85894563 85894601 -31968026 + CT-rich Low_complexity Low_complexity 2 41 0 196 205 0 0 chr9 85895381 85895420 -31967207 + MIR SINE MIR 117 155 -107 228 233 67 0 chr9 85896178 85896238 -31966389 + L2 LINE L2 3250 3313 0 913 273 29 4 chr9 85896753 85896991 -31965636 - MIR SINE MIR -1 261 18 305 307 30 72 chr9 85897092 85897356 -31965271 - L2 LINE L2 -801 2513 2261 21 0 0 0 chr9 85899784 85899805 -31962822 + AT_rich Low_complexity Low_complexity 1 21 0 313 253 177 5 chr9 85900234 85900432 -31962195 - L1ME4a LINE L1 -9 6112 5881 238 318 91 0 chr9 85900493 85900647 -31961980 - L1ME4a LINE L1 -333 5788 5621 242 328 103 0 chr9 85902629 85902745 -31959882 - L3 LINE CR1 -50 1527 1400 323 315 103 35 chr9 85902782 85902985 -31959642 + MIR SINE MIR 46 262 0 306 0 0 0 chr9 85905758 85905792 -31956835 + (TG)n Simple_repeat Simple_repeat 2 35 0 2219 162 56 2 chr9 85907135 85907529 -31955098 - L1MA5 LINE L1 -6 6294 5880 1047 188 6 11 chr9 85907529 85907710 -31954917 - MER58A DNA MER1_type -8 216 37 22 0 0 0 chr9 85909354 85909376 -31953251 + AT_rich Low_complexity Low_complexity 1 22 0 900 137 8 0 chr9 85909387 85909518 -31953109 + AluJo SINE Alu 3 134 -178 250 341 82 7 chr9 85910349 85910484 -31952143 - MIR SINE MIR -109 153 9 194 330 195 5 chr9 85910738 85910938 -31951689 - L2 LINE L2 -217 3055 2818 31 44 0 0 chr9 85911538 85911583 -31951044 + AT_rich Low_complexity Low_complexity 1 45 0 267 307 189 16 chr9 85911896 85912023 -31950604 + L2 LINE L2 3116 3264 -8 2314 98 3 0 chr9 85913506 85913801 -31948826 + AluSq SINE Alu 1 296 -17 21 0 0 0 chr9 85914111 85914132 -31948495 + AT_rich Low_complexity Low_complexity 1 21 0 347 271 99 24 chr9 85914869 85915025 -31947602 + MIR SINE MIR 38 212 -50 428 312 74 48 chr9 85915421 85915652 -31946975 - MIR SINE MIR 0 262 26 296 322 129 47 chr9 85915992 85916589 -31946038 + L2 LINE L2 1788 2433 -881 2066 149 49 32 chr9 85916827 85917196 -31945431 - THE1C LTR MaLR 0 375 1 15091 131 24 14 chr9 85917900 85920267 -31942360 - Tigger1 DNA MER2_type 0 2418 28 337 320 149 14 chr9 85920980 85921202 -31941425 + L2 LINE L2 2725 2976 -338 368 244 87 9 chr9 85922170 85922285 -31940342 - MIR SINE MIR -21 241 118 255 345 71 71 chr9 85924354 85924734 -31937893 - L2 LINE L2 -65 3207 2828 413 299 68 56 chr9 85924824 85925075 -31937552 - L2 LINE L2 -652 2662 2409 308 271 84 19 chr9 85926080 85926187 -31936440 - L2 LINE L2 -5 3308 3195 3362 178 91 3 chr9 85926378 85926707 -31935920 - L1MB2 LINE L1 -8 6163 5864 306 0 0 0 chr9 85926707 85926741 -31935886 + (TG)n Simple_repeat Simple_repeat 2 35 0 3362 178 91 3 chr9 85926741 85927059 -31935568 - L1MB2 LINE L1 -307 5864 5459 324 372 16 8 chr9 85927765 85927894 -31934733 - L2 LINE L2 -176 3096 2967 184 333 129 0 chr9 85928282 85928414 -31934213 - L2 LINE L2 -849 2465 2317 229 263 0 18 chr9 85929375 85929432 -31933195 + L2 LINE L2 3255 3310 -3 335 225 83 25 chr9 85929906 85930026 -31932601 + L2 LINE L2 3138 3264 -8 268 280 134 45 chr9 85930839 85930996 -31931631 + MIR SINE MIR 20 190 -72 22 70 0 0 chr9 85931118 85931161 -31931466 + AT_rich Low_complexity Low_complexity 1 43 0 270 0 0 0 chr9 85931236 85931266 -31931361 + (TTGG)n Simple_repeat Simple_repeat 4 33 0 214 191 0 0 chr9 85933503 85933545 -31929082 + T-rich Low_complexity Low_complexity 1 42 0 24 0 0 0 chr9 85933793 85933817 -31928810 + AT_rich Low_complexity Low_complexity 1 24 0 1563 174 17 27 chr9 85934312 85934611 -31928016 + L1MA9 LINE L1 6013 6308 -4 745 231 6 22 chr9 85935663 85935845 -31926782 + MIR SINE MIR 73 251 -11 230 197 28 42 chr9 85937880 85937951 -31924676 + CT-rich Low_complexity Low_complexity 2 71 0 194 290 54 43 chr9 85938612 85938705 -31923922 - MIR SINE MIR -50 212 119 181 274 0 20 chr9 85939181 85939232 -31923395 - MIR SINE MIR -143 119 70 689 253 47 43 chr9 85939405 85939658 -31922969 - MIR SINE MIR 0 262 9 284 337 40 0 chr9 85940257 85940358 -31922269 - L2 LINE L2 0 3272 3168 1636 223 80 23 chr9 85940501 85940941 -31921686 - MLT1C LTR MaLR -2 465 1 303 111 0 0 chr9 85941356 85941401 -31921226 - L2 LINE L2 -1 3312 3268 270 327 19 9 chr9 85942280 85942387 -31920240 - L2 LINE L2 -46 3267 3160 406 302 49 40 chr9 85944203 85944428 -31918199 + MIR SINE MIR 20 246 -16 437 349 29 19 chr9 85944520 85944729 -31917898 + L3b LINE CR1 1111 1321 -262 1023 205 28 9 chr9 85945040 85945255 -31917372 + MER20 DNA MER1_type 1 219 0 364 279 32 46 chr9 85946389 85946545 -31916082 + MIR SINE MIR 20 177 -61 333 193 48 48 chr9 85947634 85947717 -31914910 - MER58A DNA MER1_type 0 224 142 1285 138 0 5 chr9 85947733 85947928 -31914699 + AluJb SINE Alu 74 267 -45 516 194 102 0 chr9 85947936 85948044 -31914583 - MER58A DNA MER1_type 0 119 1 344 277 129 7 chr9 85949119 85949274 -31913353 + MIR SINE MIR 18 191 -71 397 317 19 6 chr9 85949285 85949446 -31913181 - Tigger8 DNA MER2_type -5 661 499 9366 204 50 10 chr9 85949473 85949809 -31912818 - L1PB1 LINE L1 -21 6130 5809 567 0 0 0 chr9 85949809 85949872 -31912755 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 9366 204 50 10 chr9 85949872 85950929 -31911698 - L1PB1 LINE L1 -342 5809 4795 1860 148 13 62 chr9 85950929 85951302 -31911325 - THE1A LTR MaLR 0 355 1 9366 204 50 10 chr9 85951302 85953388 -31909239 - L1PB1 LINE L1 -1356 4795 2510 1354 240 60 42 chr9 85953397 85953897 -31908730 - Tigger8 DNA MER2_type -153 513 5 2498 236 76 18 chr9 85953897 85954672 -31907955 + L1ME1 LINE L1 4145 4874 -1292 387 0 0 0 chr9 85954672 85954715 -31907912 + (CA)n Simple_repeat Simple_repeat 2 44 0 2498 236 76 18 chr9 85954715 85955307 -31907320 + L1ME1 LINE L1 4874 5622 -544 1233 206 24 10 chr9 85955325 85955616 -31907011 + L1ME1 LINE L1 5757 6051 -115 258 215 0 0 chr9 85955616 85955681 -31906946 + L1MB8 LINE L1 6100 6164 -14 216 308 0 0 chr9 85956429 85956481 -31906146 + C-rich Low_complexity Low_complexity 2 53 0 944 182 6 6 chr9 85956582 85956741 -31905886 - FRAM SINE Alu -7 159 1 21 0 0 0 chr9 85957021 85957042 -31905585 + AT_rich Low_complexity Low_complexity 1 21 0 244 293 0 0 chr9 85957755 85957813 -31904814 + L2 LINE L2 3215 3272 0 7413 39 0 5 chr9 85958648 85959599 -31903028 - L1PA5 LINE L1 0 6154 5203 206 429 53 8 chr9 85959674 85959807 -31902820 - L2 LINE L2 -27 3245 3107 471 92 13 0 chr9 85959949 85960025 -31902602 - L1MA9 LINE L1 -5 6307 6231 1698 165 17 23 chr9 85960025 85960377 -31902250 + L1MA9 LINE L1 5512 5861 -451 1362 207 63 9 chr9 85960597 85960916 -31901711 + MER58B DNA MER1_type 2 337 -4 2388 106 0 3 chr9 85961429 85961741 -31900886 - AluSx SINE Alu -1 311 1 238 309 18 87 chr9 85962144 85962419 -31900208 + L1ME4a LINE L1 5581 5836 -285 318 298 57 21 chr9 85962464 85962605 -31900022 + L1ME4a LINE L1 5922 6067 -54 351 294 175 38 chr9 85962688 85963305 -31899322 - L2 LINE L2 -42 3271 2572 198 0 0 0 chr9 85963779 85963801 -31898826 + (TGAA)n Simple_repeat Simple_repeat 4 25 0 321 341 59 7 chr9 85964259 85964394 -31898233 - MIR SINE MIR -102 160 19 205 194 73 186 chr9 85965076 85965200 -31897427 + L2 LINE L2 3134 3243 -29 276 169 56 45 chr9 85966811 85966900 -31895727 + L1MC4 LINE L1 7953 8042 0 421 286 30 89 chr9 85967210 85967378 -31895249 + MIR SINE MIR 28 185 -77 5400 132 33 6 chr9 85967422 85969012 -31893615 - L1MA8 LINE L1 -3 6288 4653 297 266 38 0 chr9 85969012 85969091 -31893536 + MIR SINE MIR 169 250 -12 243 114 0 0 chr9 85974315 85974359 -31888268 + (A)n Simple_repeat Simple_repeat 1 44 0 231 36 0 0 chr9 85974934 85974962 -31887665 + (T)n Simple_repeat Simple_repeat 1 28 0 270 81 0 0 chr9 85975260 85975297 -31887330 + (T)n Simple_repeat Simple_repeat 1 37 0 297 185 0 0 chr9 85975461 85975526 -31887101 + (TG)n Simple_repeat Simple_repeat 1 65 0 243 152 0 0 chr9 85975923 85975969 -31886658 + A-rich Low_complexity Low_complexity 1 46 0 291 222 51 51 chr9 85977632 85977749 -31884878 - MLT1J1 LTR MaLR -286 160 44 403 332 54 21 chr9 85978564 85978805 -31883822 - L1ME4a LINE L1 -262 5859 5611 601 290 22 7 chr9 85978888 85979026 -31883601 + MIR SINE MIR 15 154 -108 423 276 32 38 chr9 85979755 85979940 -31882687 + MLT1J LTR MaLR 14 197 -314 225 278 0 0 chr9 85980814 85980868 -31881759 + L2 LINE L2 3007 3060 -212 350 256 0 0 chr9 85980918 85980996 -31881631 - MIR SINE MIR -5 257 180 1511 205 86 21 chr9 85980996 85981422 -31881205 - MLT1C LTR MaLR 0 467 19 424 269 144 6 chr9 85981449 85981609 -31881018 - MIR SINE MIR -77 185 4 313 303 0 11 chr9 85981616 85981699 -31880928 + L2 LINE L2 3225 3307 -1 423 0 0 0 chr9 85981699 85981746 -31880881 + (TGGA)n Simple_repeat Simple_repeat 4 50 0 490 269 63 63 chr9 85983279 85983454 -31879173 + MIR SINE MIR 15 189 -73 286 310 112 0 chr9 85983552 85983668 -31878959 + MIR SINE MIR 118 246 -16 370 260 110 24 chr9 85983797 85983924 -31878703 + MIR SINE MIR 25 162 -100 295 216 78 49 chr9 85983982 85984084 -31878543 + L2 LINE L2 3195 3299 -14 314 292 0 0 chr9 85984656 85984745 -31877882 - MIR SINE MIR -12 250 162 441 227 86 121 chr9 85984957 85985213 -31877414 + L2 LINE L2 2999 3245 -27 461 200 111 67 chr9 85985218 85985398 -31877229 - MLT1L LTR MaLR -6 609 422 318 338 15 30 chr9 85986211 85986344 -31876283 + MIR SINE MIR 14 144 -118 235 336 115 42 chr9 85986834 85987476 -31875151 + L2 LINE L2 2325 3010 -262 449 190 80 110 chr9 85987489 85987551 -31875076 + MIR SINE MIR 102 164 -98 207 0 0 0 chr9 85987551 85987574 -31875053 + (TTA)n Simple_repeat Simple_repeat 2 24 0 449 190 80 110 chr9 85987574 85987674 -31874953 + MIR SINE MIR 164 259 -3 201 342 58 17 chr9 85987790 85987910 -31874717 + L2 LINE L2 3148 3272 0 343 188 40 10 chr9 85988467 85988568 -31874059 - L1ME4a LINE L1 -1 6120 6017 1059 276 71 40 chr9 85988592 85989070 -31873557 + L2 LINE L2 2156 2648 -666 306 305 68 8 chr9 85989133 85989251 -31873376 + L1MC4 LINE L1 6577 6701 -1341 305 276 23 0 chr9 85989179 85989266 -31873361 - L1MC4 LINE L1 -1340 6702 6614 * 410 194 0 53 chr9 85989289 85989647 -31872980 + (TA)n Simple_repeat Simple_repeat 1 338 0 352 185 0 76 chr9 85989689 85990026 -31872601 + (TA)n Simple_repeat Simple_repeat 1 311 0 426 201 0 77 chr9 85990047 85990241 -31872386 + (TA)n Simple_repeat Simple_repeat 2 180 0 200 174 27 87 chr9 85990248 85990432 -31872195 + (TATATG)n Simple_repeat Simple_repeat 2 174 0 200 174 27 87 chr9 85990443 85990627 -31872000 + (TATATG)n Simple_repeat Simple_repeat 2 174 0 200 174 27 87 chr9 85990638 85990822 -31871805 + (TATATG)n Simple_repeat Simple_repeat 2 174 0 200 174 27 87 chr9 85990833 85991017 -31871610 + (TATATG)n Simple_repeat Simple_repeat 2 174 0 200 191 0 63 chr9 85991034 85991097 -31871530 + (TATG)n Simple_repeat Simple_repeat 2 60 0 429 175 5 58 chr9 85991104 85991293 -31871334 + (TA)n Simple_repeat Simple_repeat 1 179 0 957 284 97 19 chr9 85992223 85992635 -31869992 + LTR16A LTR ERVL 1 444 -6 480 264 88 71 chr9 85993538 85993947 -31868680 + MLT1H LTR MaLR 110 525 -24 1144 234 40 20 chr9 85994219 85994565 -31868062 - L1ME2 LINE L1 -3 6161 5809 2766 103 11 16 chr9 85994565 85994942 -31867685 + THE1C LTR MaLR 1 375 0 1082 86 26 0 chr9 85994942 85995094 -31867533 + THE1C-int LTR MaLR 1 156 -1424 * 1282 80 17 0 chr9 85995091 85995266 -31867361 + THE1C-int LTR MaLR 97 274 -1306 757 231 51 39 chr9 85995267 85995595 -31867032 + MLT2B3 LTR ERVL 205 535 -19 781 89 0 0 chr9 85995595 85995707 -31866920 - L1P LINE L1 -957 5189 5078 2591 114 22 3 chr9 85995935 85996302 -31866325 + THE1C LTR MaLR 2 375 0 305 244 39 0 chr9 85996772 85996850 -31865777 + MIR SINE MIR 64 144 -64 905 234 16 5 chr9 85997114 85997298 -31865329 - MER5A DNA MER1_type -1 188 3 3123 93 18 9 chr9 85997300 85997751 -31864876 - L1P4 LINE L1 -434 5729 5275 427 320 68 63 chr9 85998256 85998669 -31863958 + LTR67 LTR ERVL 25 439 -118 246 365 37 0 chr9 85998774 85998881 -31863746 + MIR SINE MIR 38 148 -60 278 250 213 9 chr9 85999134 85999242 -31863385 + L2 LINE L2 3137 3266 -6 212 278 0 42 chr9 85999983 86000055 -31862572 + GA-rich Low_complexity Low_complexity 4 72 0 948 299 33 53 chr9 86000379 86000774 -31861853 - MLT1I LTR MaLR -4 405 19 183 220 0 0 chr9 86000779 86000829 -31861798 + (TATG)n Simple_repeat Simple_repeat 2 51 0 1191 167 25 15 chr9 86000853 86001057 -31861570 - Tigger3(Golem) DNA MER2_type 0 3037 2832 456 294 94 29 chr9 86001409 86001621 -31861006 - MIR SINE MIR 0 262 42 302 282 332 8 chr9 86001815 86002056 -31860571 + L3 LINE CR1 1168 1486 -91 510 279 76 25 chr9 86002059 86002256 -31860371 + MIR SINE MIR 15 221 -41 318 123 0 0 chr9 86002800 86002857 -31859770 + (TG)n Simple_repeat Simple_repeat 2 58 0 637 280 96 56 chr9 86002910 86003357 -31859270 + L2 LINE L2 2178 2642 -672 861 183 0 0 chr9 86003380 86003511 -31859116 + FLAM_A SINE Alu 1 131 -2 1551 200 27 3 chr9 86003600 86003900 -31858727 - AluJb SINE Alu -1 311 5 270 281 22 22 chr9 86003949 86004038 -31858589 + L2 LINE L2 3163 3251 -21 1901 165 25 22 chr9 86004472 86004830 -31857797 - MLT1A2 LTR MaLR -4 370 12 390 311 88 52 chr9 86004884 86004975 -31857652 - MIR SINE MIR -1 261 175 2496 165 28 31 chr9 86004975 86005400 -31857227 + MSTB LTR MaLR 1 424 -2 390 311 88 52 chr9 86005400 86005559 -31857068 - MIR SINE MIR -87 175 2 2008 124 14 0 chr9 86005566 86005856 -31856771 - MER58B DNA MER1_type 0 341 48 686 233 78 81 chr9 86006038 86006360 -31856267 + L2 LINE L2 2989 3309 -4 1980 126 0 7 chr9 86006424 86006710 -31855917 + AluSx SINE Alu 1 284 -28 307 351 13 13 chr9 86008317 86008471 -31854156 - MIR3 SINE MIR -25 183 30 2344 70 0 3 chr9 86008480 86008815 -31853812 - AluY SINE Alu 0 334 1 418 289 101 53 chr9 86008853 86009081 -31853546 + MIR SINE MIR 20 258 -4 445 296 113 6 chr9 86009763 86009922 -31852705 - MIR SINE MIR -13 249 74 250 302 85 9 chr9 86009972 86010078 -31852549 - MIR SINE MIR -77 185 72 213 350 17 17 chr9 86010229 86010346 -31852281 - MER5A DNA MER1_type -27 162 46 417 314 144 44 chr9 86010456 86011717 -31850910 + L2 LINE L2 1857 3259 -13 692 282 41 0 chr9 86011751 86011946 -31850681 - MIR SINE MIR -10 252 50 506 286 63 120 chr9 86013128 86013586 -31849041 + L2 LINE L2 2835 3266 -6 306 314 0 39 chr9 86013602 86013704 -31848923 + MER5B DNA MER1_type 5 102 -76 952 158 12 18 chr9 86013714 86013885 -31848742 - MER5A DNA MER1_type -18 171 2 300 245 349 0 chr9 86014025 86014131 -31848496 - MER5A DNA MER1_type -6 183 41 936 211 13 73 chr9 86014144 86014376 -31848251 - MER58A DNA MER1_type 0 224 7 305 194 118 0 chr9 86014845 86014938 -31847689 - MIR SINE MIR -27 235 132 764 271 36 24 chr9 86015168 86015419 -31847208 - MIR SINE MIR 0 262 9 768 288 59 28 chr9 86016624 86016895 -31845732 - MLT1K LTR MaLR -2 586 325 2053 157 38 29 chr9 86016895 86017239 -31845388 + MER7A DNA MER2_type 1 345 -1 768 288 59 28 chr9 86017239 86017502 -31845125 - MLT1K LTR MaLR -263 325 2 332 268 31 10 chr9 86017505 86017602 -31845025 + L2 LINE L2 3215 3313 0 186 71 0 0 chr9 86017857 86017885 -31844742 + (TTCA)n Simple_repeat Simple_repeat 2 29 0 352 321 75 0 chr9 86017886 86017992 -31844635 - L2 LINE L2 -13 3259 3146 219 109 43 0 chr9 86018006 86018052 -31844575 + A-rich Low_complexity Low_complexity 3 50 0 2176 116 7 0 chr9 86018091 86018383 -31844244 + AluSx SINE Alu 1 294 -18 400 306 33 22 chr9 86018404 86018584 -31844043 + MIR SINE MIR 47 228 -34 428 319 38 80 chr9 86018609 86018872 -31843755 - L2 LINE L2 -177 3095 2844 905 240 76 83 chr9 86020083 86020529 -31842098 - MLT1J1 LTR MaLR -1 445 3 1581 212 28 19 chr9 86021155 86021514 -31841113 - MLT1A1 LTR MaLR -3 362 1 290 98 0 0 chr9 86021765 86021806 -31840821 + L1ME2 LINE L1 6124 6164 0 924 258 116 30 chr9 86023115 86023476 -31839151 - LTR16A LTR ERVL -43 407 16 1719 172 154 12 chr9 86023570 86023913 -31838714 - MSTD LTR MaLR 0 396 5 428 258 150 36 chr9 86023969 86024136 -31838491 - MIR3 SINE MIR -3 205 20 13937 125 60 42 chr9 86024212 86026581 -31836046 - Tigger1 DNA MER2_type -5 2413 3 2777 131 66 68 chr9 86026620 86027194 -31835433 + MER4B LTR ERV1 2 574 -36 232 151 226 0 chr9 86027515 86027568 -31835059 - L2 LINE L2 -188 3084 3020 202 229 16 33 chr9 86028068 86028129 -31834498 + L2 LINE L2 2939 2998 -274 303 267 67 33 chr9 86028154 86028244 -31834383 - MER58 DNA MER1_type -121 94 2 300 285 45 45 chr9 86028253 86028432 -31834195 - L2 LINE L2 -444 2870 2692 1990 197 2 58 chr9 86030615 86031042 -31831585 - MER57A LTR ERV1 0 403 1 611 250 54 85 chr9 86031857 86031976 -31830651 - MIR SINE MIR 0 262 141 1972 117 3 62 chr9 86031976 86032158 -31830469 - AluSx SINE Alu -7 305 114 207 0 0 0 chr9 86032158 86032181 -31830446 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 1958 127 0 4 chr9 86032181 86032457 -31830170 - AluSc SINE Alu -30 279 5 1972 117 3 62 chr9 86032457 86032582 -31830045 - AluSx SINE Alu -196 116 15 611 250 54 85 chr9 86032582 86032722 -31829905 - MIR SINE MIR -121 141 11 264 335 146 6 chr9 86032754 86032918 -31829709 - MIR SINE MIR -73 189 3 22 0 0 0 chr9 86033130 86033152 -31829475 + AT_rich Low_complexity Low_complexity 1 22 0 221 180 20 0 chr9 86034322 86034372 -31828255 + (TATATG)n Simple_repeat Simple_repeat 2 52 0 248 337 12 0 chr9 86035548 86035631 -31826996 + MIR3 SINE MIR 77 160 -48 2476 79 0 0 chr9 86035773 86036077 -31826550 - AluY SINE Alu -2 309 6 273 369 27 13 chr9 86036736 86036885 -31825742 + L2 LINE L2 2607 2757 -557 468 111 0 0 chr9 86037481 86037553 -31825074 + (CA)n Simple_repeat Simple_repeat 2 73 0 1956 202 55 22 chr9 86037682 86038133 -31824494 - MLT1C LTR MaLR 0 467 2 1708 129 0 0 chr9 86038274 86038507 -31824120 + AluSx SINE Alu 1 233 -79 2087 110 0 0 chr9 86038623 86038895 -31823732 - AluSx SINE Alu -25 287 16 662 141 173 6 chr9 86038940 86039096 -31823531 - L1MB3 LINE L1 -11 6172 5991 299 196 68 0 chr9 86039271 86039419 -31823208 + (TATATG)n Simple_repeat Simple_repeat 2 159 0 211 293 27 27 chr9 86039742 86039817 -31822810 - L2 LINE L2 -13 3300 3226 510 310 75 28 chr9 86040310 86040565 -31822062 + L2 LINE L2 2086 2352 -962 587 154 8 0 chr9 86040609 86040726 -31821901 + CT-rich Low_complexity Low_complexity 1 118 0 189 0 0 0 chr9 86040726 86040747 -31821880 + (TG)n Simple_repeat Simple_repeat 1 21 0 1007 158 40 0 chr9 86040924 86041076 -31821551 + FRAM SINE Alu 2 159 -7 1071 144 0 0 chr9 86041745 86041898 -31820729 + L1MB5 LINE L1 6015 6167 -7 786 293 125 27 chr9 86041957 86042466 -31820161 + L2 LINE L2 2742 3312 -1 617 129 58 7 chr9 86042466 86042605 -31820022 + GA-rich Low_complexity Low_complexity 4 149 0 200 204 0 0 chr9 86042942 86042986 -31819641 + L2 LINE L2 3184 3227 -86 521 301 75 5 chr9 86043083 86043269 -31819358 + MIR3 SINE MIR 10 208 0 427 277 146 41 chr9 86043486 86043706 -31818921 + MIR SINE MIR 10 252 -10 635 177 14 34 chr9 86044176 86044323 -31818304 + L1M4 LINE L1 5155 5298 -848 1544 209 16 19 chr9 86044946 86045262 -31817365 + MER58B DNA MER1_type 27 341 0 408 254 102 17 chr9 86045361 86045479 -31817148 + MIR3 SINE MIR 43 170 -38 219 281 16 0 chr9 86045490 86045554 -31817073 - L2 LINE L2 0 3272 3208 2266 136 0 0 chr9 86045639 86045948 -31816679 + AluSx SINE Alu 1 309 -3 2986 128 36 6 chr9 86046187 86046686 -31815941 + L1MA8 LINE L1 5773 6286 -5 327 353 59 0 chr9 86047134 86047321 -31815306 - MIR SINE MIR -57 205 8 2173 130 3 0 chr9 86047390 86047697 -31814930 - AluSx SINE Alu -4 308 1 542 101 0 0 chr9 86048253 86048332 -31814295 - MADE1 DNA Mariner -1 79 1 311 328 37 21 chr9 86049439 86049628 -31812999 - L3 LINE CR1 -860 717 526 10633 215 72 27 chr9 86050165 86052421 -31810206 + L1MD1 LINE L1 21 2173 -4367 927 151 34 11 chr9 86052421 86052600 -31810027 + L1MA6 LINE L1 6116 6298 -2 10633 215 72 27 chr9 86052600 86054030 -31808597 + L1MD1 LINE L1 2173 3952 -2588 2317 114 0 0 chr9 86054030 86054336 -31808291 + AluSc SINE Alu 1 306 -3 10633 215 72 27 chr9 86054336 86055142 -31807485 + L1MD1 LINE L1 3952 4720 -1820 243 179 0 0 chr9 86055146 86055185 -31807442 - Alu SINE Alu -263 40 2 3063 148 127 30 chr9 86055186 86055762 -31806865 - Tigger1 DNA MER2_type -1765 653 22 3838 163 58 11 chr9 86055771 86056762 -31805865 + L1MD1 LINE L1 5278 6308 -328 1802 28 9 0 chr9 86056765 86056980 -31805647 - L1PA4 LINE L1 0 6155 5939 1722 164 45 3 chr9 86056980 86057287 -31805340 + L1MD1 LINE L1 6312 6636 0 183 322 0 0 chr9 86057297 86057356 -31805271 - MIR3 SINE MIR -41 167 109 396 59 0 0 chr9 86057964 86058015 -31804612 + (TG)n Simple_repeat Simple_repeat 2 52 0 231 328 134 0 chr9 86059057 86059176 -31803451 + MIR SINE MIR 58 192 -70 2100 138 0 7 chr9 86059271 86059613 -31803014 - AluSx SINE Alu 0 312 1 209 216 171 23 chr9 86060345 86060433 -31802194 + MER5A DNA MER1_type 89 189 0 445 337 91 18 chr9 86060762 86061047 -31801580 + L2 LINE L2 2964 3269 -3 217 291 76 0 chr9 86061064 86061143 -31801484 - MIR SINE MIR -62 146 62 909 270 85 58 chr9 86061288 86061978 -31800649 + L2 LINE L2 2476 3192 -121 472 274 0 0 chr9 86062106 86062219 -31800408 - MIR SINE MIR -118 144 32 256 272 62 0 chr9 86062742 86062823 -31799804 + MIR SINE MIR 67 152 -110 243 180 0 0 chr9 86063230 86063280 -31799347 + MIR SINE MIR 104 153 -109 514 218 112 35 chr9 86064291 86064461 -31798166 + MIR SINE MIR 80 262 0 2487 57 0 3 chr9 86064946 86065242 -31797385 + AluY SINE Alu 7 301 -10 219 226 32 16 chr9 86065322 86065384 -31797243 + MER5A DNA MER1_type 39 101 -88 313 302 99 5 chr9 86065980 86066172 -31796455 - MIR SINE MIR -16 246 37 833 273 118 28 chr9 86066800 86067222 -31795405 - MLT1L LTR MaLR -5 610 151 291 238 177 27 chr9 86068003 86068150 -31794477 - MIR3 SINE MIR -24 184 16 209 245 0 0 chr9 86069643 86069692 -31792935 + MIR SINE MIR 12 60 -202 497 194 16 0 chr9 86069752 86069876 -31792751 + GA-rich Low_complexity Low_complexity 3 128 0 188 224 112 31 chr9 86069879 86069977 -31792650 + MIR SINE MIR 157 262 0 229 268 14 14 chr9 86070511 86070582 -31792045 + L2 LINE L2 372 442 -2872 182 273 0 0 chr9 86070797 86070841 -31791786 + L2 LINE L2 3263 3306 -7 216 345 98 34 chr9 86071390 86071611 -31791016 + L2 LINE L2 1853 2058 -1256 2520 84 0 0 chr9 86071611 86071920 -31790707 - AluSg SINE Alu -1 309 1 216 345 98 34 chr9 86071920 86072136 -31790491 + L2 LINE L2 2058 2318 -996 192 77 0 0 chr9 86072666 86072692 -31789935 + (CCA)n Simple_repeat Simple_repeat 2 27 0 191 311 124 40 chr9 86074071 86074248 -31788379 - MIR SINE MIR -51 211 20 219 253 0 0 chr9 86074682 86074761 -31787866 + (TGAA)n Simple_repeat Simple_repeat 2 80 0 736 314 58 0 chr9 86075062 86075304 -31787323 - MIR SINE MIR -1 261 6 422 252 176 48 chr9 86075349 86075559 -31787068 - MIR SINE MIR -12 250 14 560 258 50 27 chr9 86075624 86075815 -31786812 + MIR SINE MIR 19 211 -51 199 319 11 22 chr9 86075879 86075970 -31786657 - MIR SINE MIR -76 132 43 308 327 70 5 chr9 86077150 86077349 -31785278 + L3 LINE CR1 1018 1229 -348 401 264 14 47 chr9 86077433 86077581 -31785046 + L2 LINE L2 2681 2823 -491 1278 168 0 59 chr9 86077936 86078174 -31784453 - AluJo SINE Alu -78 234 11 196 218 96 146 chr9 86078317 86078578 -31784049 + L2 LINE L2 2994 3241 -72 385 162 0 0 chr9 86078578 86078646 -31783981 - MLT1F LTR MaLR 0 542 475 2366 205 54 4 chr9 86079820 86080284 -31782343 - MLT1F LTR MaLR -55 487 1 219 312 13 13 chr9 86080284 86080361 -31782266 + L2 LINE L2 3196 3272 0 912 289 112 0 chr9 86081854 86082159 -31780468 + MLT1I LTR MaLR 66 404 -5 319 288 114 0 chr9 86082465 86082597 -31780030 + MIR SINE MIR 20 166 -96 346 252 63 47 chr9 86082744 86082871 -31779756 - MLT2E LTR ERVL -499 129 1 189 271 119 17 chr9 86082954 86083072 -31779555 - L2 LINE L2 -575 2739 2610 299 272 36 25 chr9 86083521 86083667 -31778960 + MLT1J2 LTR MaLR 72 219 -190 326 266 40 16 chr9 86083719 86083843 -31778784 + MIR SINE MIR 120 246 -16 2058 135 43 0 chr9 86083960 86084308 -31778319 - L1MB1 LINE L1 -7 6161 5799 328 123 346 0 chr9 86084535 86084616 -31778011 - L1MB1 LINE L1 -1997 5811 5703 311 367 31 0 chr9 86085026 86085154 -31777473 + MIR3 SINE MIR 2 133 -75 389 219 106 16 chr9 86085428 86085551 -31777076 + MER94 DNA DNA 1 134 0 204 364 40 30 chr9 86085873 86085972 -31776655 - L2 LINE L2 -36 3236 3137 1180 299 44 32 chr9 86086998 86087433 -31775194 - MLT1K LTR MaLR -23 565 126 410 346 39 0 chr9 86087495 86087651 -31774976 + MLT1J1 LTR MaLR 1 162 -284 303 188 43 14 chr9 86087770 86087839 -31774788 + MLT1J1 LTR MaLR 374 444 -2 397 238 77 14 chr9 86087979 86088145 -31774482 + MIR SINE MIR 22 195 -65 219 200 62 62 chr9 86089807 86089872 -31772755 + MIR SINE MIR 87 145 -63 736 306 50 15 chr9 86090016 86090353 -31772274 + L2 LINE L2 2457 2805 -509 444 288 68 8 chr9 86090644 86090776 -31771851 + L2 LINE L2 3133 3272 0 287 346 89 19 chr9 86091239 86091508 -31771119 - L1MC4a LINE L1 -1889 5919 5632 309 302 64 12 chr9 86091675 86091847 -31770780 - MIR SINE MIR -54 208 28 1525 154 95 18 chr9 86092325 86092610 -31770017 + AluSx SINE Alu 1 307 -5 268 335 10 16 chr9 86092818 86093012 -31769615 - L3 LINE CR1 -126 1451 1259 440 195 169 0 chr9 86093885 86094003 -31768624 - MIR SINE MIR -73 189 52 470 256 26 8 chr9 86094180 86094297 -31768330 - L2 LINE L2 -4 3309 3191 1875 139 59 25 chr9 86094571 86094895 -31767732 + MER1B DNA MER1_type 3 337 0 273 223 0 35 chr9 86095051 86095129 -31767498 - MIR SINE MIR -61 147 74 1529 168 157 64 chr9 86095297 86095767 -31766860 - Charlie1 DNA MER1_type -2 2759 2246 2224 61 43 4 chr9 86095767 86096046 -31766581 + AluY SINE Alu 1 290 -21 324 187 0 69 chr9 86096187 86096483 -31766144 + (TA)n Simple_repeat Simple_repeat 1 275 0 444 232 10 0 chr9 86096530 86096629 -31765998 - Charlie1 DNA MER1_type -599 2162 2063 761 218 39 13 chr9 86096630 86096786 -31765841 - Charlie1 DNA MER1_type -2601 160 1 198 371 9 9 chr9 86097435 86097551 -31765076 + L2 LINE L2 2625 2740 -574 2201 199 47 20 chr9 86097856 86098348 -31764279 + MLT1D LTR MaLR 1 505 0 1105 144 0 5 chr9 86098816 86099003 -31763624 - L1P LINE L1 -923 5223 5038 2828 94 40 0 chr9 86099003 86099404 -31763223 + L1PA13 LINE L1 5744 6162 -1 564 298 28 28 chr9 86099427 86099645 -31762982 + MIR SINE MIR 23 240 -22 1712 168 50 6 chr9 86099987 86100308 -31762319 - MER63 DNA MER1_type -76 984 650 357 180 16 0 chr9 86100310 86100371 -31762256 + MER58 DNA MER1_type 1 62 -153 1727 147 114 23 chr9 86101306 86101613 -31761014 + MER1B DNA MER1_type 1 335 -2 718 251 147 64 chr9 86101742 86102213 -31760414 - MLT1J LTR MaLR -1 510 1 415 231 58 16 chr9 86102273 86102394 -31760233 - LTR67 LTR ERVL -4 553 428 1752 180 7 0 chr9 86102581 86102875 -31759752 + AluJo SINE Alu 1 296 -16 466 194 37 9 chr9 86102888 86102996 -31759631 + L1MC3 LINE L1 7120 7230 -555 548 341 112 20 chr9 86103009 86103510 -31759117 - L2 LINE L2 -822 2492 1946 1687 137 87 63 chr9 86103858 86104224 -31758403 + THE1C LTR MaLR 1 375 0 271 250 34 0 chr9 86105178 86105266 -31757361 + MIR SINE MIR 118 208 -54 527 242 62 43 chr9 86105307 86105468 -31757159 - MER63A DNA MER1_type -26 184 21 297 75 0 0 chr9 86105474 86105514 -31757113 + (TTA)n Simple_repeat Simple_repeat 2 41 0 250 194 140 21 chr9 86105540 86105633 -31756994 - MIR SINE MIR -86 176 73 210 121 182 30 chr9 86107762 86107828 -31754799 + MIR SINE MIR 107 182 -80 1670 170 4 0 chr9 86107993 86108252 -31754375 + AluJb SINE Alu 1 260 -52 307 200 0 0 chr9 86108863 86108928 -31753699 + MIR SINE MIR 188 252 -10 209 261 58 29 chr9 86109249 86109318 -31753309 - L3 LINE CR1 -435 1142 1072 619 320 22 18 chr9 86109639 86109867 -31752760 + MIR SINE MIR 15 243 -19 185 364 109 25 chr9 86110141 86110380 -31752247 - L2 LINE L2 -508 2806 2548 518 253 75 0 chr9 86110630 86110776 -31751851 - L3 LINE CR1 -151 1426 1270 216 0 0 0 chr9 86110782 86110806 -31751821 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 287 336 92 40 chr9 86110848 86111098 -31751529 - L3 LINE CR1 -1081 496 234 579 301 141 16 chr9 86111197 86111566 -31751061 + L2 LINE L2 2899 3313 0 412 309 29 29 chr9 86112872 86113047 -31749580 + MER20B DNA MER1_type 1 175 -608 686 258 133 38 chr9 86113230 86113683 -31748944 + HAL1 LINE L1 2008 2503 -4 402 307 31 0 chr9 86114282 86114409 -31748218 - MIR SINE MIR -17 245 115 433 301 93 26 chr9 86114592 86114785 -31747842 - MIR SINE MIR -10 252 47 1659 223 118 44 chr9 86114810 86114873 -31747754 + MLT1F LTR MaLR 4 61 -481 2047 138 52 17 chr9 86114873 86115235 -31747392 - THE1C LTR MaLR 0 375 1 1659 223 118 44 chr9 86115235 86115673 -31746954 + MLT1F LTR MaLR 61 542 0 244 267 83 8 chr9 86116436 86116556 -31746071 - MIR SINE MIR -81 181 53 397 229 149 53 chr9 86116688 86116868 -31745759 + MIR SINE MIR 18 220 -42 353 75 19 0 chr9 86116868 86116921 -31745706 + (TAAA)n Simple_repeat Simple_repeat 3 56 0 352 260 31 10 chr9 86117499 86117595 -31745032 + MIR SINE MIR 26 123 -85 259 239 28 0 chr9 86118475 86118546 -31744081 + L2 LINE L2 1528 1600 -1714 2230 257 115 27 chr9 86118553 86118850 -31743777 + L2 LINE L2 1739 2009 -1305 225 0 0 0 chr9 86118850 86118875 -31743752 + (CACCT)n Simple_repeat Simple_repeat 3 27 0 2230 257 115 27 chr9 86118875 86119502 -31743125 + L2 LINE L2 2009 2744 -570 508 253 15 92 chr9 86119508 86119836 -31742791 + L2 LINE L2 2998 3300 -13 218 31 0 31 chr9 86119836 86119868 -31742759 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 1541 82 14 0 chr9 86121103 86121310 -31741317 + THE1A LTR MaLR 1 210 -145 5458 98 3 0 chr9 86121311 86122018 -31740609 + THE1A-int LTR MaLR 872 1580 0 2777 93 0 0 chr9 86122018 86122371 -31740256 + THE1A LTR MaLR 1 353 -2 1694 161 25 11 chr9 86122371 86122657 -31739970 + AluJb SINE Alu 18 307 -5 2727 178 4 36 chr9 86122657 86123191 -31739436 - L1MB5 LINE L1 -29 6145 5629 642 246 156 75 chr9 86123333 86123679 -31738948 - L2 LINE L2 -43 3270 2897 217 332 132 28 chr9 86123717 86124323 -31738304 + L2 LINE L2 1545 2213 -1101 2678 205 100 41 chr9 86124328 86124938 -31737689 - MER82 DNA MER2_type -6 647 2 190 323 114 63 chr9 86124969 86125672 -31736955 + L2 LINE L2 2238 2976 -338 2168 151 60 34 chr9 86126451 86126967 -31735660 + MLT2A2 LTR ERVL 1 552 -2 647 200 0 17 chr9 86127313 86127433 -31735194 - AluJo SINE Alu -138 174 57 263 355 162 0 chr9 86127433 86127630 -31734997 + L3 LINE CR1 947 1175 -402 23 68 0 0 chr9 86127858 86127902 -31734725 + AT_rich Low_complexity Low_complexity 1 44 0 729 313 68 17 chr9 86128007 86128301 -31734326 + MER90 LTR ERV1 260 568 -7 330 172 0 0 chr9 86128305 86128363 -31734264 - L2 LINE L2 -8 3305 3248 1887 174 0 0 chr9 86129067 86129361 -31733266 - AluJo SINE Alu -18 294 1 845 179 158 5 chr9 86129734 86129924 -31732703 + MER20 DNA MER1_type 1 219 0 548 203 36 109 chr9 86129942 86130044 -31732583 + MER3 DNA MER1_type 18 126 -83 1708 138 0 19 chr9 86130044 86130312 -31732315 - AluJb SINE Alu -17 295 33 548 203 36 109 chr9 86130312 86130345 -31732282 + MER3 DNA MER1_type 126 160 -49 1942 183 14 3 chr9 86130345 86130689 -31731938 - MER7A DNA MER2_type 0 346 1 2426 97 0 0 chr9 86130698 86130998 -31731629 - AluSx SINE Alu -12 300 1 548 203 36 109 chr9 86130998 86131043 -31731584 + MER3 DNA MER1_type 168 195 -14 209 333 14 0 chr9 86131143 86131212 -31731415 + L2 LINE L2 3136 3205 -67 238 293 13 13 chr9 86133087 86133162 -31729465 + L2 LINE L2 3193 3267 -5 274 131 0 82 chr9 86133196 86133257 -31729370 - MLT2D LTR ERVL 0 520 465 212 188 94 0 chr9 86133258 86133322 -31729305 + (CATATA)n Simple_repeat Simple_repeat 1 70 0 1105 213 31 64 chr9 86133323 86133749 -31728878 - MLT2D LTR ERVL -50 414 1 262 381 0 0 chr9 86134403 86134521 -31728106 - MIR3 SINE MIR -1 207 90 466 293 8 23 chr9 86134869 86135002 -31727625 - L2 LINE L2 -5 3267 3137 3235 145 44 29 chr9 86135020 86135215 -31727412 + MER7C DNA MER2_type 1 192 -2836 2023 139 0 3 chr9 86135215 86135517 -31727110 + AluSx SINE Alu 1 301 -11 3235 145 44 29 chr9 86135517 86135914 -31726713 + MER7C DNA MER2_type 192 602 0 224 239 114 34 chr9 86137198 86137286 -31725341 + MIR SINE MIR 41 135 -73 619 241 18 0 chr9 86139480 86139646 -31722981 - MER5B DNA MER1_type -9 169 1 185 300 33 33 chr9 86140027 86140117 -31722510 - MIR SINE MIR -99 109 20 1690 187 86 43 chr9 86140640 86141083 -31721544 - MLT1C LTR MaLR 0 467 6 453 231 28 0 chr9 86142208 86142316 -31720311 - MER81 DNA DNA -2 112 2 246 345 109 27 chr9 86142323 86142433 -31720194 - L2 LINE L2 -15 3257 3139 1222 199 89 61 chr9 86142886 86143212 -31719415 - MLT1C LTR MaLR -8 459 163 251 122 98 0 chr9 86143236 86143277 -31719350 - Tigger5 DNA MER2_type -2244 79 35 5944 200 41 73 chr9 86143321 86145453 -31717174 + L1MA5 LINE L1 13 2879 -4330 1505 218 14 3 chr9 86145453 86145742 -31716885 + AluJo SINE Alu 1 292 -20 5944 200 41 73 chr9 86145742 86146100 -31716527 + L1MA5 LINE L1 2879 3247 -3962 21 0 0 0 chr9 86146163 86146184 -31716443 + AT_rich Low_complexity Low_complexity 1 21 0 4224 212 96 3 chr9 86146198 86147258 -31715369 + L1MA5 LINE L1 3264 4422 -2786 7925 155 33 26 chr9 86147270 86147781 -31714846 + L1MA5 LINE L1 4855 5361 -2001 2458 83 0 0 chr9 86147781 86148081 -31714546 - AluY SINE Alu -11 300 1 7925 155 33 26 chr9 86148081 86149252 -31713375 + L1MA5 LINE L1 5361 6562 -800 810 192 0 0 chr9 86149252 86149382 -31713245 + FLAM_A SINE Alu 4 133 0 7925 155 33 26 chr9 86149382 86150188 -31712439 + L1MA5 LINE L1 6562 7361 -1 667 242 33 13 chr9 86150206 86150359 -31712268 - MLT1C LTR MaLR -349 156 1 285 349 40 53 chr9 86150505 86150657 -31711970 + MER91A DNA MER1_type 26 175 -21 286 319 43 0 chr9 86150673 86150742 -31711885 + MER91A DNA MER1_type 124 195 -1 1011 230 0 0 chr9 86151080 86151258 -31711369 + MER45A DNA AcHobo 1 178 0 2317 72 20 3 chr9 86151510 86151802 -31710825 - AluSc SINE Alu -12 297 1 2121 132 3 7 chr9 86152514 86152818 -31709809 - AluSx SINE Alu -3 309 7 3082 189 30 2 chr9 86152856 86153480 -31709147 + L1 LINE L1 4119 4760 -1386 522 140 43 0 chr9 86153710 86153803 -31708824 - L1MA6 LINE L1 -1 6299 6203 1658 142 74 34 chr9 86153803 86154127 -31708500 - MER46B DNA MER2_type 0 236 25 2060 130 0 0 chr9 86154127 86154445 -31708182 - AluJb SINE Alu 0 318 1 2532 144 30 84 chr9 86154712 86155226 -31707401 + LTR12 LTR ERV1 119 581 -133 1833 116 112 7 chr9 86155226 86155529 -31707098 + MSTA LTR MaLR 94 428 0 363 224 14 65 chr9 86155628 86155753 -31706874 + MLT1J LTR MaLR 287 487 -128 890 224 274 70 chr9 86156198 86156672 -31705955 - MLT1E3 LTR MaLR -72 552 12 2121 119 0 3 chr9 86156812 86157105 -31705522 + AluSx SINE Alu 5 296 -16 4294 170 65 20 chr9 86158004 86158852 -31703775 + Tigger6a DNA MER2_type 1 886 -197 755 211 38 24 chr9 86159695 86159908 -31702719 + MER112 DNA MER1_type 44 259 -1 2424 88 0 0 chr9 86160286 86160583 -31702044 + AluSc SINE Alu 1 297 -12 534 282 213 13 chr9 86162307 86162612 -31700015 - LTR16C LTR ERVL -8 483 118 783 324 51 18 chr9 86163049 86163503 -31699124 - HERVL LTR ERVL -1462 4192 3724 1613 322 74 26 chr9 86163528 86164600 -31698027 - HERVL LTR ERVL -2050 3435 2293 2215 133 0 0 chr9 86165281 86165583 -31697044 + AluSx SINE Alu 2 303 -9 225 94 0 0 chr9 86165583 86165615 -31697012 + (GA)n Simple_repeat Simple_repeat 1 32 0 1890 116 72 4 chr9 86166005 86166282 -31696345 - AluSg SINE Alu -14 296 1 23 0 0 0 chr9 86166603 86166626 -31696001 + AT_rich Low_complexity Low_complexity 1 23 0 204 97 0 0 chr9 86166759 86166790 -31695837 + (CA)n Simple_repeat Simple_repeat 2 32 0 420 300 17 49 chr9 86166799 86167082 -31695545 - L1MC4a LINE L1 -157 5964 5686 232 191 57 133 chr9 86167157 86167262 -31695365 + MLT1L LTR MaLR 148 244 -371 1984 109 7 18 chr9 86167305 86167615 -31695012 + AluY SINE Alu 1 307 0 506 257 71 22 chr9 86167658 86167841 -31694786 + MLT1L LTR MaLR 424 615 0 251 296 0 45 chr9 86167915 86168003 -31694624 - L1MC4a LINE L1 -539 5582 5499 385 271 0 25 chr9 86168037 86168155 -31694472 - MLT1K LTR MaLR -18 570 456 244 103 35 0 chr9 86168213 86168271 -31694356 + (TA)n Simple_repeat Simple_repeat 2 61 0 611 252 45 45 chr9 86168831 86169016 -31693611 + MLT1K LTR MaLR 118 316 -272 226 169 34 51 chr9 86169025 86169084 -31693543 + MLT1K LTR MaLR 472 529 -59 538 300 97 31 chr9 86169768 86169995 -31692632 - MIR SINE MIR 0 262 21 650 329 113 21 chr9 86172358 86172872 -31689755 + HAL1 LINE L1 1 561 -1946 259 240 67 0 chr9 86172964 86173039 -31689588 + HAL1 LINE L1 1452 1531 -976 216 252 82 59 chr9 86174111 86174246 -31688381 - L2 LINE L2 -873 2441 2304 1960 144 0 3 chr9 86174292 86174630 -31687997 + AluSx SINE Alu 2 338 0 1154 281 54 18 chr9 86174766 86175157 -31687470 - MLT1I LTR MaLR 0 409 5 2156 123 0 0 chr9 86176079 86176371 -31686256 + AluSx SINE Alu 1 292 -20 224 262 0 24 chr9 86176571 86176655 -31685972 + (TATAA)n Simple_repeat Simple_repeat 3 84 0 286 197 68 51 chr9 86176804 86176921 -31685706 + L1ME4a LINE L1 5992 6110 -11 1844 157 3 23 chr9 86177330 86177635 -31684992 - AluJb SINE Alu -13 299 1 261 351 48 6 chr9 86177752 86177920 -31684707 - L2 LINE L2 -1883 1431 1257 221 362 135 0 chr9 86179154 86179339 -31683288 - L2 LINE L2 -2128 1186 977 344 290 97 19 chr9 86179898 86180053 -31682574 + MIR SINE MIR 91 257 -5 221 252 91 16 chr9 86181083 86181188 -31681439 - MIR SINE MIR -50 212 96 585 286 137 22 chr9 86182992 86183219 -31679408 + LTR16B LTR ERVL 1 253 -211 607 258 40 56 chr9 86183433 86183631 -31678996 - MIR SINE MIR -1 261 67 637 183 0 2 chr9 86183834 86183985 -31678642 - MER53 DNA DNA -1 188 1 670 280 66 33 chr9 86184081 86184324 -31678303 - MIR SINE MIR 0 262 12 454 210 158 58 chr9 86184518 86184784 -31677843 - L1ME4a LINE L1 -3 6118 5811 1569 184 104 39 chr9 86184784 86185148 -31677479 + MLT1B LTR MaLR 1 388 -2 454 210 158 58 chr9 86185148 86185210 -31677417 - L1ME4a LINE L1 -310 5811 5757 2788 137 17 0 chr9 86185210 86185619 -31677008 + MSTA LTR MaLR 1 416 -12 294 229 104 90 chr9 86185702 86185735 -31676892 - L1ME4a LINE L1 -466 5655 5624 512 231 28 9 chr9 86185735 86185843 -31676784 - MER81 DNA DNA 0 114 5 294 229 104 90 chr9 86185843 86185953 -31676674 - L1ME4a LINE L1 -497 5624 5510 1892 159 3 7 chr9 86186774 86187075 -31675552 - MLT2B1 LTR ERVL -220 300 1 482 261 106 19 chr9 86187414 86187575 -31675052 - MER5B DNA MER1_type 0 178 4 643 238 71 24 chr9 86187638 86187806 -31674821 - MER5B DNA MER1_type -2 176 1 2762 110 18 77 chr9 86188300 86188340 -31674287 - MSTA LTR MaLR 0 428 387 2035 146 0 3 chr9 86188340 86188635 -31673992 + AluSx SINE Alu 2 295 -17 2762 110 18 77 chr9 86188635 86189049 -31673578 - MSTA LTR MaLR -41 387 1 1247 253 119 14 chr9 86189297 86189724 -31672903 + MER90 LTR ERV1 75 546 -68 1299 199 8 31 chr9 86189734 86189987 -31672640 - MLT1E1 LTR MaLR -2 652 406 1613 100 56 41 chr9 86189987 86190316 -31672311 + THE1C LTR MaLR 1 375 0 622 214 301 73 chr9 86190316 86190675 -31671952 - MLT1E1 LTR MaLR -230 424 1 264 226 97 16 chr9 86190675 86190736 -31671891 + MER90 LTR ERV1 510 575 0 350 238 73 73 chr9 86191454 86191618 -31671009 - L2 LINE L2 0 3313 3150 2195 147 41 19 chr9 86191863 86192230 -31670397 + THE1C LTR MaLR 1 375 0 526 101 127 0 chr9 86192365 86192444 -31670183 + 5S rRNA rRNA 2 90 -31 2259 110 0 0 chr9 86192484 86192784 -31669843 + AluY SINE Alu 1 300 -11 221 330 133 12 chr9 86193054 86193227 -31669400 + L2 LINE L2 3119 3312 -1 613 300 136 54 chr9 86193267 86193798 -31668829 - L2 LINE L2 -276 3037 2490 496 249 83 24 chr9 86194075 86194244 -31668383 - L2 LINE L2 -831 2483 2305 2122 198 81 31 chr9 86194481 86194962 -31667665 + MLT1D LTR MaLR 1 505 0 2132 110 3 16 chr9 86195023 86195332 -31667295 + AluY SINE Alu 1 305 -6 1825 184 107 52 chr9 86195465 86195906 -31666721 + MER31B LTR ERV1 2 466 0 239 137 0 20 chr9 86196133 86196184 -31666443 + (TTCC)n Simple_repeat Simple_repeat 3 52 0 219 188 21 21 chr9 86196198 86196246 -31666381 - L2 LINE L2 0 3272 3225 313 257 34 74 chr9 86196331 86196479 -31666148 - MIR SINE MIR -20 242 101 1868 168 34 3 chr9 86196482 86196810 -31665817 + L1MC1 LINE L1 5996 6333 0 1493 134 0 0 chr9 86197060 86197277 -31665350 - L1MB1 LINE L1 -2 6166 5950 234 0 0 0 chr9 86198243 86198269 -31664358 + (A)n Simple_repeat Simple_repeat 1 26 0 221 344 89 0 chr9 86198350 86198440 -31664187 - L2 LINE L2 -19 3253 3156 229 67 0 0 chr9 86200393 86200423 -31662204 - L1P5 LINE L1 -516 5635 5606 4036 87 12 3 chr9 86201417 86201983 -31660644 + L1PB1 LINE L1 5580 6150 -1 1915 101 4 0 chr9 86202164 86202412 -31660215 - AluSc SINE Alu -12 297 49 229 283 32 61 chr9 86202568 86202749 -31659878 - MIR SINE MIR -65 143 15 563 213 173 0 chr9 86202752 86202902 -31659725 - MER5A DNA MER1_type 0 189 14 183 305 0 0 chr9 86203729 86203788 -31658839 - L2 LINE L2 0 3272 3214 854 226 83 5 chr9 86203850 86204067 -31658560 - MIR SINE MIR -27 235 2 1801 179 3 3 chr9 86204165 86204466 -31658161 + AluJb SINE Alu 1 301 -11 498 189 76 16 chr9 86204467 86204608 -31658019 - MIR SINE MIR -62 146 31 2262 118 0 0 chr9 86205664 86205968 -31656659 + AluSx SINE Alu 1 304 -8 279 167 21 0 chr9 86306036 86306084 -31556543 + MLT1E2 LTR MaLR 568 616 -10 746 218 36 96 chr9 86306274 86306437 -31556190 - L1ME1 LINE L1 -93 6073 5935 3821 102 5 30 chr9 86306437 86307003 -31555624 + L1PB1 LINE L1 5597 6148 -3 746 218 36 96 chr9 86307003 86307142 -31555485 - L1ME1 LINE L1 -231 5935 5789 268 196 0 0 chr9 86307200 86307251 -31555376 - L2 LINE L2 0 3313 3263 277 121 103 17 chr9 86307252 86307310 -31555317 - L1MC1 LINE L1 0 6333 6271 315 338 78 7 chr9 86307484 86307626 -31555001 + MIR3 SINE MIR 6 157 -51 340 109 0 0 chr9 86308335 86308381 -31554246 - AluSc SINE Alu -255 46 1 2837 23 0 0 chr9 86309055 86309365 -31553262 - AluSx SINE Alu -2 310 1 2233 114 0 0 chr9 86309370 86309676 -31552951 - AluSx SINE Alu -6 306 1 203 184 0 0 chr9 86309935 86309973 -31552654 - MIR SINE MIR -61 147 110 373 252 88 112 chr9 86310558 86310923 -31551704 - L1M2 LINE L1 -5696 1153 798 341 287 63 7 chr9 86311265 86311408 -31551219 + MIR3 SINE MIR 40 190 -18 490 92 0 0 chr9 86313216 86313281 -31549346 + HSMAR1 DNA Mariner 1223 1287 0 591 168 0 28 chr9 86313562 86313669 -31548958 + U13 snRNA snRNA 1 104 0 1095 176 33 11 chr9 86314972 86315154 -31547473 - MER5A DNA MER1_type 0 189 4 837 238 16 16 chr9 86315166 86315355 -31547272 - MER58A DNA MER1_type -1 223 35 399 320 104 14 chr9 86315420 86315717 -31546910 + L2 LINE L2 1758 2081 -1233 1389 271 86 36 chr9 86315729 86316424 -31546203 + MER45C DNA AcHobo 1 763 -190 464 118 46 3 chr9 86316558 86316661 -31545966 + L1MB8 LINE L1 5826 5947 -222 257 146 0 0 chr9 86316761 86316802 -31545825 - AluSg SINE Alu -200 100 60 985 162 16 42 chr9 86316808 86316999 -31545628 - AluJb SINE Alu -124 188 3 572 301 106 7 chr9 86317035 86317337 -31545290 + L2 LINE L2 2964 3295 -18 2203 65 58 4 chr9 86317338 86317615 -31545012 - AluY SINE Alu -19 292 1 961 130 11 34 chr9 86317626 86317803 -31544824 - AluSg/x SINE Alu -6 306 134 2505 70 0 0 chr9 86317803 86318103 -31544524 - AluY SINE Alu -10 301 2 258 32 0 0 chr9 86318106 86318137 -31544490 + (TG)n Simple_repeat Simple_repeat 2 32 0 247 242 121 89 chr9 86318144 86318334 -31544293 - L2 LINE L2 -25 3247 3052 23 33 0 0 chr9 86319766 86319796 -31542831 + AT_rich Low_complexity Low_complexity 1 30 0 2286 99 0 3 chr9 86320195 86320489 -31542138 + AluSg SINE Alu 1 293 -17 2193 106 0 0 chr9 86320501 86320793 -31541834 + AluY SINE Alu 14 305 -6 2338 87 3 0 chr9 86320811 86321109 -31541518 + AluSx SINE Alu 1 299 -13 832 175 7 15 chr9 86321111 86321248 -31541379 + AluJb SINE Alu 137 272 -40 1417 131 0 0 chr9 86321609 86321807 -31540820 + AluSc SINE Alu 97 294 -15 183 42 0 0 chr9 86321810 86321834 -31540793 + (TAAAAA)n Simple_repeat Simple_repeat 4 27 0 1955 195 168 7 chr9 86322315 86322750 -31539877 - MLT1D LTR MaLR 0 505 1 434 276 41 21 chr9 86322750 86322886 -31539741 + MIR SINE MIR 38 179 -83 2377 50 0 88 chr9 86322907 86323248 -31539379 - AluY SINE Alu 0 311 1 207 100 0 0 chr9 86323652 86323682 -31538945 + (A)n Simple_repeat Simple_repeat 1 30 0 16856 32 2 1 chr9 86324701 86326696 -31535931 - L1P LINE L1 -921 5225 3227 438 0 0 0 chr9 86326692 86326740 -31535887 + L1P LINE L1 2981 3028 -3118 * 182 264 0 88 chr9 86328597 86328688 -31533939 + MIR3 SINE MIR 10 92 -116 1756 117 0 4 chr9 86329187 86329434 -31533193 - AluSq SINE Alu -67 246 1 305 299 85 45 chr9 86330495 86330672 -31531955 + MIR3 SINE MIR 18 201 -7 641 309 12 6 chr9 86332503 86332668 -31529959 - MIR SINE MIR -85 177 12 22 0 0 0 chr9 86334098 86334120 -31528507 + AT_rich Low_complexity Low_complexity 1 22 0 361 333 9 0 chr9 86334409 86334520 -31528107 - L2 LINE L2 -1360 1954 1843 804 121 23 30 chr9 86334747 86334879 -31527748 - AluJb SINE Alu -181 131 1 377 278 13 6 chr9 86334880 86334989 -31527638 - MIR SINE MIR -65 143 32 209 133 0 67 chr9 86335812 86335857 -31526770 + (TTTTA)n Simple_repeat Simple_repeat 2 43 0 477 314 0 0 chr9 86336705 86336829 -31525798 + L2 LINE L2 3190 3313 0 498 96 14 0 chr9 86336880 86336953 -31525674 + MER41A LTR ERV1 1 74 -480 986 204 81 0 chr9 86337532 86337753 -31524874 + MIR SINE MIR 13 251 -11 1485 150 72 68 chr9 86337765 86338072 -31524555 - AluJo SINE Alu -4 308 1 2341 65 3 3 chr9 86338491 86338783 -31523844 - AluY SINE Alu -19 292 1 242 298 69 38 chr9 86338910 86339041 -31523586 + LTR67 LTR ERVL 160 294 -263 505 338 50 43 chr9 86339192 86339657 -31522970 - HERVL LTR ERVL -3679 1975 1508 302 278 102 67 chr9 86339758 86340129 -31522498 - HERVL LTR ERVL -4612 384 1 285 317 43 19 chr9 86340129 86340290 -31522337 - LTR16C LTR ERVL 0 491 327 193 281 39 92 chr9 86340708 86340861 -31521766 + MIR SINE MIR 72 216 -46 264 348 17 17 chr9 86341841 86341956 -31520671 - MIR SINE MIR -74 134 20 7871 39 0 0 chr9 86342041 86343479 -31519148 - L1PA5 LINE L1 0 6154 4753 22 35 0 0 chr9 86343536 86343565 -31519062 + AT_rich Low_complexity Low_complexity 1 29 0 1546 179 13 0 chr9 86443833 86444151 -31418476 + MER33 DNA MER1_type 3 324 0 233 205 39 39 chr9 86445038 86445116 -31417511 - MIR SINE MIR -1 261 184 334 247 49 0 chr9 86445121 86445202 -31417425 + MIR SINE MIR 178 262 0 * 445 284 0 37 chr9 86445172 86445304 -31417323 - MIR SINE MIR -48 214 88 868 206 11 6 chr9 86445304 86445479 -31417148 - MER5A DNA MER1_type 0 189 14 2275 114 0 0 chr9 86445515 86445823 -31416804 + AluSq SINE Alu 1 308 -5 302 330 0 0 chr9 86446366 86446466 -31416161 + L1MC4 LINE L1 7927 8026 -16 182 303 64 128 chr9 86446536 86446833 -31415794 - L2 LINE L2 -67 3205 2928 1438 151 9 9 chr9 86446837 86447055 -31415572 + AluSx SINE Alu 1 218 -94 309 109 0 0 chr9 86447055 86447101 -31415526 + (GAAAA)n Simple_repeat Simple_repeat 3 48 0 850 139 21 8 chr9 86447105 86447349 -31415278 + GA-rich Low_complexity Low_complexity 1 247 0 374 186 0 23 chr9 86448519 86448605 -31414022 - L1MC5 LINE L1 -54 7907 7824 263 299 88 5 chr9 86449185 86449379 -31413248 + L1ME LINE L1 5614 5823 -298 249 180 66 0 chr9 86449412 86449473 -31413154 + L1MC5 LINE L1 7454 7518 -443 981 155 6 43 chr9 86449479 86449640 -31412987 - AluJb SINE Alu -21 291 137 242 168 129 30 chr9 86449716 86449817 -31412810 + L1MC5 LINE L1 7609 7719 -242 2165 124 3 0 chr9 86450072 86450363 -31412264 - AluSx SINE Alu -20 292 1 180 0 0 0 chr9 86450748 86450768 -31411859 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 1684 179 14 0 chr9 86450961 86451272 -31411355 - AluJo SINE Alu 0 315 1 926 171 61 35 chr9 86452088 86452316 -31410311 - MER63 DNA MER1_type -33 1029 796 1233 128 97 13 chr9 86452346 86452573 -31410054 - MER63 DNA MER1_type -815 246 1 2288 100 10 0 chr9 86453223 86453522 -31409105 - AluSc SINE Alu -7 302 1 309 217 133 0 chr9 86453686 86453769 -31408858 - MIR SINE MIR -108 154 61 224 215 38 51 chr9 86453806 86453885 -31408742 + CT-rich Low_complexity Low_complexity 3 80 0 493 173 33 4 chr9 86454394 86454549 -31408078 + MER106A DNA MER1_type 1 214 -22 184 314 0 0 chr9 86454577 86454628 -31407999 + MIR SINE MIR 200 250 -12 2323 87 3 10 chr9 86455068 86455378 -31407249 - AluSc SINE Alu -1 308 1 22 43 0 21 chr9 86455446 86455479 -31407148 + AT_rich Low_complexity Low_complexity 1 34 -12 3854 132 16 7 chr9 86455479 86456084 -31406543 + L1PA13 LINE L1 5546 6156 -7 22 43 0 21 chr9 86456084 86456097 -31406530 + AT_rich Low_complexity Low_complexity 34 46 0 265 319 35 28 chr9 86456100 86456244 -31406383 - MIR SINE MIR -54 208 64 1027 106 0 0 chr9 86457542 86457674 -31404953 + AluY SINE Alu 1 132 -179 824 224 72 30 chr9 86458631 86458868 -31403759 + L1ME2 LINE L1 5917 6163 -1 450 299 21 16 chr9 86459149 86459336 -31403291 - MER5A DNA MER1_type 0 189 2 295 186 174 50 chr9 86459903 86460064 -31402563 - L1ME4a LINE L1 -3 6118 5938 2014 103 44 0 chr9 86460314 86460609 -31402018 + AluSx SINE Alu 1 307 0 196 313 16 0 chr9 86460623 86460687 -31401940 + L2 LINE L2 3208 3272 0 345 62 0 0 chr9 86460876 86460924 -31401703 + (T)n Simple_repeat Simple_repeat 1 48 0 6509 63 43 42 chr9 86460925 86461877 -31400750 - SVA Other Other -1 1385 433 663 67 8 37 chr9 86461890 86462024 -31400603 - SVA Other Other -592 794 665 5595 86 26 74 chr9 86462041 86463359 -31399268 - SVA Other Other -518 868 57 606 49 0 0 chr9 86463359 86463441 -31399186 + (GGGAGA)n Simple_repeat Simple_repeat 1 82 0 600 338 11 6 chr9 86463462 86463703 -31398924 - L1ME LINE L1 -445 5676 5436 1470 88 207 16 chr9 86463841 86464092 -31398535 - AluSq SINE Alu -3 300 2 741 188 0 0 chr9 86464560 86464693 -31397934 - AluJb SINE Alu -1 311 179 2097 125 0 0 chr9 86464702 86465012 -31397615 - AluSx SINE Alu 0 312 3 743 281 86 53 chr9 86466037 86466550 -31396077 - MLT1F LTR MaLR -12 530 1 2436 183 40 14 chr9 86467125 86467635 -31394992 + L1MB4 LINE L1 4954 5488 -695 2035 101 4 0 chr9 86467635 86467893 -31394734 - AluSx SINE Alu -26 286 28 2436 183 40 14 chr9 86467893 86468125 -31394502 + L1MB4 LINE L1 5488 5713 -470 186 43 0 0 chr9 86468126 86468149 -31394478 + (CAT)n Simple_repeat Simple_repeat 2 24 0 722 201 0 8 chr9 86468201 86468335 -31394292 - FLAM_A SINE Alu 0 133 1 1828 145 44 6 chr9 86468335 86468648 -31393979 + L1MB4 LINE L1 5701 6025 -155 261 188 62 0 chr9 86468646 86468710 -31393917 - L1MB3 LINE L1 -78 6105 6038 * 566 204 0 0 chr9 86468728 86468860 -31393767 + L1MB4 LINE L1 6048 6179 -1 423 169 0 0 chr9 86468889 86468978 -31393649 + L1MB4 LINE L1 6092 6180 0 459 244 117 51 chr9 86469027 86469301 -31393326 + L2 LINE L2 3022 3313 0 1388 267 80 51 chr9 86469361 86469482 -31393145 - L1M1 LINE L1 -4006 3559 3443 2072 118 0 10 chr9 86469482 86469770 -31392857 + AluSc SINE Alu 4 288 -21 1388 267 80 51 chr9 86469770 86470438 -31392189 - L1M1 LINE L1 -4122 3443 2747 296 319 30 12 chr9 86470495 86470664 -31391963 + L1ME LINE L1 5455 5626 -544 245 276 69 0 chr9 86470762 86470849 -31391778 + MIR SINE MIR 160 252 -10 2349 104 3 3 chr9 86471028 86471337 -31391290 - AluSg SINE Alu -1 309 1 1207 186 38 0 chr9 86471507 86471717 -31390910 - AluJb SINE Alu -12 300 83 1787 216 58 14 chr9 86471757 86472202 -31390425 - MLT1C LTR MaLR -2 465 1 2502 90 3 0 chr9 86472786 86473096 -31389531 + AluSp SINE Alu 1 311 -2 2513 136 31 21 chr9 86473174 86473592 -31389035 + Tigger2a DNA MER2_type 3 424 -10 2114 94 57 17 chr9 86473751 86474049 -31388578 - AluSg SINE Alu 0 310 1 684 241 55 55 chr9 86475643 86475917 -31386710 + LTR16B LTR ERVL 191 464 0 30 0 0 0 chr9 86476015 86476045 -31386582 + AT_rich Low_complexity Low_complexity 1 30 0 3715 44 0 177 chr9 86476046 86476976 -31385651 + SVA Other Other 233 866 -520 6726 62 15 46 chr9 86476993 86477996 -31384631 + SVA Other Other 433 1386 0 180 0 0 0 chr9 86478016 86478036 -31384591 + (A)n Simple_repeat Simple_repeat 1 20 0 1796 135 0 32 chr9 86478036 86478344 -31384283 - AluJb SINE Alu 0 311 13 1757 135 53 3 chr9 86478617 86478899 -31383728 + MER73 LTR ERVL 4 299 -345 2029 159 3 50 chr9 86478966 86479236 -31383391 + MER73 LTR ERVL 276 524 -120 1804 158 16 29 chr9 86479236 86479546 -31383081 - AluJo SINE Alu -6 306 1 2029 159 3 50 chr9 86479546 86479659 -31382968 + MER73 LTR ERVL 524 641 -3 250 278 0 0 chr9 86479750 86479804 -31382823 + L2 LINE L2 3215 3268 -4 1533 243 80 0 chr9 86479905 86480345 -31382282 + L2 LINE L2 2473 2947 -367 1895 211 47 27 chr9 86480556 86480935 -31381692 + MLT1C LTR MaLR 11 402 -65 2332 94 3 0 chr9 86480935 86481232 -31381395 - AluSp SINE Alu -15 298 1 1895 211 47 27 chr9 86481232 86481298 -31381329 + MLT1C LTR MaLR 402 465 -2 249 211 92 84 chr9 86481726 86481868 -31380759 + L2 LINE L2 3109 3251 -62 2908 132 81 60 chr9 86482277 86482552 -31380075 + Tigger3b DNA MER2_type 1 269 -2759 1889 134 14 31 chr9 86482552 86482843 -31379784 - AluJo SINE Alu -26 286 1 1806 167 10 0 chr9 86482853 86483141 -31379486 - AluJb SINE Alu -21 291 1 2908 132 81 60 chr9 86483141 86483438 -31379189 + Tigger3b DNA MER2_type 277 596 -635 1017 189 0 0 chr9 86483440 86483609 -31379018 + FRAM SINE Alu 1 169 -7 3378 127 88 15 chr9 86483609 86484201 -31378426 + Tigger3b DNA MER2_type 597 1231 0 2206 102 24 0 chr9 86484217 86484510 -31378117 - AluSg SINE Alu -10 300 1 195 328 15 0 chr9 86484865 86484932 -31377695 - L2 LINE L2 -47 3225 3158 267 264 77 0 chr9 86484947 86485038 -31377589 - L2 LINE L2 -6 3266 3169 2286 89 3 10 chr9 86485072 86485374 -31377253 + AluSg SINE Alu 1 300 -10 1097 282 92 14 chr9 86485407 86485945 -31376682 - L2 LINE L2 -256 3057 2479 1421 192 26 23 chr9 86486223 86486531 -31376096 + AluJb SINE Alu 1 309 -3 433 275 8 25 chr9 86486554 86486674 -31375953 + MIR SINE MIR 22 139 -123 450 290 133 51 chr9 86486806 86487099 -31375528 - L2 LINE L2 0 3313 2997 295 359 0 0 chr9 86487162 86487290 -31375337 - L2 LINE L2 -521 2793 2666 208 286 54 0 chr9 86487274 86487330 -31375297 - MIR SINE MIR -181 81 23 * 23 68 0 0 chr9 86488240 86488284 -31374343 + GC_rich Low_complexity Low_complexity 1 44 0 317 285 166 7 chr9 86489303 86489454 -31373173 + MIR SINE MIR 16 190 -72 21 0 0 0 chr9 86490256 86490277 -31372350 + AT_rich Low_complexity Low_complexity 1 21 0 2437 76 0 10 chr9 86491331 86491633 -31370994 + AluY SINE Alu 1 299 -12 2154 94 4 0 chr9 86492122 86492399 -31370228 + AluSq SINE Alu 30 307 -6 202 184 20 20 chr9 86492685 86492734 -31369893 + L2 LINE L2 3265 3313 0 400 295 94 40 chr9 86492793 86492977 -31369650 - L2 LINE L2 0 3313 3140 1605 141 0 8 chr9 86492977 86493232 -31369395 - AluSx SINE Alu -3 309 57 400 295 94 40 chr9 86493232 86493453 -31369174 - L2 LINE L2 -173 3140 2837 788 189 0 6 chr9 86493565 86493734 -31368893 + CT-rich Low_complexity Low_complexity 1 168 0 1801 160 3 3 chr9 86493739 86494026 -31368601 - AluJo SINE Alu -25 287 1 424 243 42 21 chr9 86494067 86494211 -31368416 - L2 LINE L2 -648 2666 2520 296 179 119 24 chr9 86494213 86494297 -31368330 + MIR SINE MIR 63 154 -108 810 248 187 94 chr9 86494362 86494988 -31367639 + L2 LINE L2 1080 1763 -1551 398 256 41 36 chr9 86496715 86496910 -31365717 - L1ME LINE L1 -313 5808 5613 2334 97 7 3 chr9 86496939 86497239 -31365388 + AluSc SINE Alu 1 301 -8 217 314 0 0 chr9 86497304 86497355 -31365272 - MIR SINE MIR -196 66 16 * 454 219 7 68 chr9 86497349 86497414 -31365213 + MIR SINE MIR 104 171 -91 1769 237 101 24 chr9 86497414 86497917 -31364710 - MLT1F LTR MaLR 0 542 1 454 219 7 68 chr9 86497917 86497997 -31364630 + MIR SINE MIR 171 240 -22 1048 220 0 18 chr9 86498333 86498556 -31364071 - AluJo SINE Alu -24 288 70 270 276 229 27 chr9 86499213 86499615 -31363012 - L2 LINE L2 -967 2347 1865 1651 138 123 8 chr9 86501101 86501369 -31361258 - AluSg1 SINE Alu -10 299 1 2209 108 3 19 chr9 86501372 86501686 -31360941 - AluSc SINE Alu 0 309 1 22 35 0 0 chr9 86501688 86501717 -31360910 + AT_rich Low_complexity Low_complexity 1 29 0 2148 117 10 3 chr9 86501872 86502172 -31360455 - AluSq SINE Alu -11 302 1 180 284 0 108 chr9 86502488 86502562 -31360065 - L2 LINE L2 0 3313 3248 662 187 100 116 chr9 86502752 86502842 -31359785 - Charlie1 DNA MER1_type -1 2760 2670 1718 158 19 71 chr9 86502842 86503165 -31359462 - AluSx SINE Alu -6 306 1 662 187 100 116 chr9 86503165 86503384 -31359243 - Charlie1 DNA MER1_type -91 2670 2456 280 333 37 9 chr9 86503975 86504083 -31358544 - MIR3 SINE MIR -11 197 87 505 188 0 10 chr9 86504098 86504194 -31358433 - MER5B DNA MER1_type -4 174 80 1739 175 3 10 chr9 86506072 86506375 -31356252 - AluJo SINE Alu -11 301 1 27 73 0 0 chr9 86506843 86506898 -31355729 + AT_rich Low_complexity Low_complexity 1 55 0 2549 61 0 3 chr9 86507178 86507490 -31355137 - AluY SINE Alu 0 311 1 27 0 0 0 chr9 86507547 86507574 -31355053 + AT_rich Low_complexity Low_complexity 1 27 0 448 155 126 0 chr9 86508045 86508148 -31354479 - L1MB3 LINE L1 0 6183 6068 * 804 154 0 31 chr9 86508127 86508284 -31354343 - L1MB3 LINE L1 -255 5928 5793 2287 129 109 27 chr9 86509319 86509541 -31353086 - Tigger2 DNA MER2_type 0 2718 2516 1532 156 13 57 chr9 86509541 86509856 -31352771 + AluJb SINE Alu 1 301 -11 2287 129 109 27 chr9 86509856 86510096 -31352531 - Tigger2 DNA MER2_type -202 2516 2 780 191 0 15 chr9 86510362 86510493 -31352134 + FLAM_C SINE Alu 1 129 -4 306 67 0 0 chr9 86510580 86510625 -31352002 + (TA)n Simple_repeat Simple_repeat 2 46 0 21 0 0 0 chr9 86510628 86510649 -31351978 + AT_rich Low_complexity Low_complexity 1 21 0 2411 90 0 0 chr9 86512753 86513053 -31349574 - AluSx SINE Alu -12 300 1 547 186 85 62 chr9 86513656 86513833 -31348794 + MER5A DNA MER1_type 9 189 0 2632 47 0 0 chr9 86514184 86514485 -31348142 + AluY SINE Alu 1 301 -10 356 291 106 0 chr9 86515254 86515395 -31347232 - MIR SINE MIR -15 247 92 22 35 0 0 chr9 86515952 86515981 -31346646 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr9 86516161 86516190 -31346437 + AT_rich Low_complexity Low_complexity 1 29 0 290 202 111 40 chr9 86517197 86517296 -31345331 - LTR33A LTR ERVL -1 522 417 22 0 0 0 chr9 86517577 86517599 -31345028 + AT_rich Low_complexity Low_complexity 1 22 0 2110 112 16 3 chr9 86517755 86518058 -31344569 - AluSg SINE Alu -3 307 1 324 229 9 38 chr9 86518154 86518259 -31344368 + L2 LINE L2 2209 2310 -1004 339 125 42 0 chr9 86518429 86518501 -31344126 + CT-rich Low_complexity Low_complexity 1 75 0 4406 147 69 24 chr9 86518730 86519943 -31342684 - L1PB4 LINE L1 -1 6155 4720 257 0 30 0 chr9 86520034 86520067 -31342560 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2065 107 4 0 chr9 86520075 86520347 -31342280 - AluSx SINE Alu -39 273 1 337 337 68 10 chr9 86520468 86520550 -31342077 + MIR SINE MIR 6 82 -180 2255 82 10 10 chr9 86520550 86520844 -31341783 - AluSc SINE Alu -15 294 1 337 337 68 10 chr9 86520844 86520966 -31341661 + MIR SINE MIR 82 222 -40 23 0 0 0 chr9 86521092 86521115 -31341512 + AT_rich Low_complexity Low_complexity 1 23 0 199 284 27 0 chr9 86521500 86521574 -31341053 - L2 LINE L2 -371 2942 2867 249 33 0 0 chr9 86521626 86521656 -31340971 + (TG)n Simple_repeat Simple_repeat 2 31 0 377 289 140 54 chr9 86521663 86521978 -31340649 - L2 LINE L2 -622 2692 2351 1646 215 78 64 chr9 86522644 86523142 -31339485 - MLT1D LTR MaLR 0 505 1 2455 80 3 3 chr9 86523653 86523964 -31338663 - AluY SINE Alu 0 311 1 341 209 66 22 chr9 86523994 86524085 -31338542 + Charlie8 DNA MER1_type 42 136 -2281 394 250 48 0 chr9 86526206 86526290 -31336337 - MER3 DNA MER1_type -121 88 1 426 242 94 0 chr9 86528764 86528892 -31333735 - MER103 DNA DNA -13 153 14 296 133 48 96 chr9 86529545 86529580 -31333047 - Charlie5 DNA MER1_type -2515 109 74 2422 84 3 0 chr9 86529580 86529876 -31332751 + AluSx SINE Alu 14 310 -2 296 133 48 96 chr9 86529876 86529923 -31332704 - Charlie5 DNA MER1_type -2550 74 31 5842 203 84 81 chr9 86529935 86530821 -31331806 - L1M4 LINE L1 -1653 4729 3847 1786 33 5 9 chr9 86530821 86531032 -31331595 + AluY SINE Alu 90 299 -12 5842 203 84 81 chr9 86531032 86531250 -31331377 - L1M4 LINE L1 -2535 3847 3631 2458 67 0 19 chr9 86531250 86531565 -31331062 - AluY SINE Alu -2 309 1 5842 203 84 81 chr9 86531565 86532750 -31329877 - L1M4 LINE L1 -2751 3631 2433 668 164 0 39 chr9 86532892 86533020 -31329607 - MER1B DNA MER1_type 0 339 217 1507 143 4 20 chr9 86533034 86533300 -31329327 - Charlie3 DNA MER1_type -63 2647 52 437 242 0 0 chr9 86533298 86533393 -31329234 - Charlie3 DNA MER1_type -2615 95 1 * 1763 134 0 0 chr9 86535842 86536089 -31326538 + AluSx SINE Alu 1 247 -65 1225 207 108 22 chr9 86537226 86537540 -31325087 + MER58B DNA MER1_type 1 341 0 1806 195 106 34 chr9 86538721 86539174 -31323453 - MLT2B2 LTR ERVL -6 469 1 2065 197 84 145 chr9 86539895 86540591 -31322036 - L1MC4 LINE L1 -286 7522 6786 1011 71 0 8 chr9 86540591 86540717 -31321910 - AluSq/x SINE Alu -188 125 1 2065 197 84 145 chr9 86540717 86541065 -31321562 - L1MC4 LINE L1 -1022 6786 6556 1984 130 7 3 chr9 86541065 86541358 -31321269 + AluJb SINE Alu 1 294 -18 2065 197 84 145 chr9 86541358 86541451 -31321176 - L1MC4 LINE L1 -1252 6556 6459 204 202 58 202 chr9 86541958 86542201 -31320426 + L2 LINE L2 3024 3231 -41 298 288 100 14 chr9 86542584 86542736 -31319891 + MIR SINE MIR 30 192 -63 597 310 201 17 chr9 86543246 86543784 -31318843 - L3 LINE CR1 -3 1574 938 231 309 165 0 chr9 86543996 86544093 -31318534 - MIR SINE MIR -121 141 29 1904 147 0 23 chr9 86544297 86544597 -31318030 - AluSx SINE Alu -1 311 19 751 69 29 0 chr9 86544623 86544725 -31317902 + AluSp SINE Alu 3 107 -206 1638 109 4 0 chr9 86544827 86545057 -31317570 + AluSg/x SINE Alu 76 306 -6 302 154 77 15 chr9 86545057 86545122 -31317505 + Charlie1 DNA MER1_type 2693 2761 0 1507 42 67 5 chr9 86545516 86545709 -31316918 + AluSg SINE Alu 1 205 -105 2122 73 4 0 chr9 86546367 86546626 -31316001 + AluSp SINE Alu 3 262 -51 279 0 0 0 chr9 86546626 86546657 -31315970 + (CA)n Simple_repeat Simple_repeat 2 32 0 247 330 50 0 chr9 86546664 86546764 -31315863 - MIR SINE MIR -125 137 33 336 235 152 0 chr9 86547823 86547955 -31314672 + L2 LINE L2 3162 3313 0 2344 93 3 3 chr9 86548087 86548399 -31314228 - AluSp SINE Alu -1 312 1 190 174 22 43 chr9 86548500 86548546 -31314081 + MIR SINE MIR 112 156 -106 477 352 114 28 chr9 86549325 86549812 -31312815 - L2 LINE L2 0 3272 2744 314 228 79 53 chr9 86550493 86550607 -31312020 + MIR SINE MIR 48 164 -98 2347 100 7 0 chr9 86550762 86551041 -31311586 + AluSx SINE Alu 1 284 -28 216 0 0 0 chr9 86551041 86551065 -31311562 + (CA)n Simple_repeat Simple_repeat 1 24 0 2347 100 7 0 chr9 86551065 86551094 -31311533 + AluSx SINE Alu 284 311 -1 2087 108 0 7 chr9 86551287 86551565 -31311062 + AluSx SINE Alu 6 281 -31 582 75 0 0 chr9 86551565 86551645 -31310982 + (CAAG)n Simple_repeat Simple_repeat 1 80 0 216 0 0 0 chr9 86551644 86551668 -31310959 + (GGGA)n Simple_repeat Simple_repeat 1 24 0 * 330 132 0 0 chr9 86552034 86552087 -31310540 + (GGGA)n Simple_repeat Simple_repeat 2 54 0 416 159 9 35 chr9 86552104 86552217 -31310410 + GA-rich Low_complexity Low_complexity 1 110 0 2589 54 0 6 chr9 86552222 86552535 -31310092 + AluY SINE Alu 1 311 0 619 306 86 44 chr9 86552731 86553136 -31309491 - HERV16 LTR ERVL -4574 422 1 232 283 166 64 chr9 86553136 86553450 -31309177 - LTR16A LTR ERVL 0 450 105 236 220 220 100 chr9 86553516 86553666 -31308961 - MIR SINE MIR 0 262 95 937 191 151 4 chr9 86553716 86553941 -31308686 - L1MD3 LINE L1 -9 7986 7729 460 225 127 42 chr9 86554456 86554598 -31308029 + MIR SINE MIR 109 262 0 181 222 121 61 chr9 86554591 86554690 -31307937 + MIR SINE MIR 150 254 -8 * 1409 142 64 131 chr9 86554710 86555083 -31307544 - MER7A DNA MER2_type 0 346 1 268 318 31 16 chr9 86555198 86555327 -31307300 - MIR SINE MIR -14 248 118 348 286 134 0 chr9 86555366 86555485 -31307142 - L2 LINE L2 -6 3307 3173 869 246 122 80 chr9 86555508 86556009 -31306618 + LTR33A LTR ERVL 1 522 -1 575 323 105 19 chr9 86556010 86556267 -31306360 - L2 LINE L2 -146 3167 2889 1903 137 0 17 chr9 86556408 86556708 -31305919 - AluSx SINE Alu -17 295 1 6386 101 26 3 chr9 86557405 86559119 -31303508 - L1PA14 LINE L1 -2 6159 4433 332 284 32 0 chr9 86559352 86559447 -31303180 - MIR3 SINE MIR -13 195 98 193 208 146 0 chr9 86559686 86559734 -31302893 + L2 LINE L2 3257 3311 -2 238 280 0 54 chr9 86560140 86560233 -31302394 - MIR SINE MIR -34 228 141 1505 147 23 70 chr9 86560233 86560368 -31302259 + MLT2D LTR ERVL 3 143 -271 1612 190 0 13 chr9 86560368 86560684 -31301943 + AluJo SINE Alu 1 312 0 1505 147 23 70 chr9 86560684 86560848 -31301779 + MLT2D LTR ERVL 143 288 -126 355 267 147 26 chr9 86560850 86560966 -31301661 - MIR SINE MIR -115 147 18 1556 186 40 45 chr9 86560978 86561144 -31301483 + MLT1A2 LTR MaLR 1 166 -208 2156 121 3 0 chr9 86561144 86561451 -31301176 + AluSq SINE Alu 1 308 -5 1556 186 40 45 chr9 86561451 86561472 -31301155 + MLT1A2 LTR MaLR 166 186 -188 441 36 0 0 chr9 86561472 86561527 -31301100 + (TC)n Simple_repeat Simple_repeat 1 55 0 1556 186 40 45 chr9 86561527 86561714 -31300913 + MLT1A2 LTR MaLR 186 374 0 216 283 17 0 chr9 86561753 86561813 -31300814 + L2 LINE L2 3251 3311 -2 820 148 0 0 chr9 86562730 86562852 -31299775 - FLAM_C SINE Alu -21 122 1 2128 101 7 0 chr9 86562880 86563177 -31299450 + AluSx SINE Alu 1 299 -13 475 194 65 0 chr9 86563183 86563276 -31299351 - MER45A DNA AcHobo -22 156 58 295 297 95 19 chr9 86563343 86563501 -31299126 + MIR SINE MIR 7 171 -57 228 213 139 74 chr9 86563909 86564017 -31298610 + MIR SINE MIR 148 262 0 2340 179 64 39 chr9 86565546 86566031 -31296596 - MLT1D LTR MaLR -8 497 1 2064 130 0 0 chr9 86566451 86566752 -31295875 - AluSx SINE Alu -11 301 1 232 324 113 34 chr9 86567092 86567296 -31295331 + L2 LINE L2 2810 3029 -243 2096 107 3 0 chr9 86567414 86567705 -31294922 - AluSg SINE Alu -18 292 1 320 340 80 25 chr9 86567824 86567986 -31294641 - MIR SINE MIR -81 181 11 185 200 0 0 chr9 86568062 86568097 -31294530 - L2 LINE L2 -213 3059 3025 1566 146 34 24 chr9 86568117 86568248 -31294379 + AluJo SINE Alu 5 133 -179 2137 129 0 0 chr9 86568248 86568557 -31294070 + AluSx SINE Alu 1 309 -3 1566 146 34 24 chr9 86568557 86568720 -31293907 + AluJo SINE Alu 133 302 -10 221 289 58 10 chr9 86569152 86569257 -31293370 + MIR3 SINE MIR 92 165 -43 331 250 65 77 chr9 86569322 86569490 -31293137 + L1MC4a LINE L1 6041 6206 -1602 231 250 0 0 chr9 86569493 86569542 -31293085 + (CAT)n Simple_repeat Simple_repeat 2 53 -4 1901 107 55 3 chr9 86569542 86569833 -31292794 - AluSx SINE Alu -6 306 1 231 250 0 0 chr9 86569833 86569839 -31292788 + (CAT)n Simple_repeat Simple_repeat 52 57 0 182 31 0 62 chr9 86569879 86569911 -31292716 + (TAAG)n Simple_repeat Simple_repeat 3 32 0 1433 99 54 18 chr9 86570441 86570486 -31292141 + AluSc SINE Alu 80 122 -187 2335 81 0 0 chr9 86570486 86570794 -31291833 + AluY SINE Alu 1 308 -3 1433 99 54 18 chr9 86570794 86570970 -31291657 + AluSc SINE Alu 122 309 0 249 246 15 46 chr9 86570991 86571121 -31291506 + L1ME4a LINE L1 5993 6118 -3 2034 116 7 13 chr9 86571235 86571537 -31291090 + AluSx SINE Alu 1 300 -12 2051 103 3 30 chr9 86572405 86572707 -31289920 - AluSx SINE Alu -18 294 1 201 211 0 0 chr9 86572866 86572918 -31289709 + (TTAGGG)n Simple_repeat Simple_repeat 6 57 0 350 290 173 0 chr9 86573389 86573551 -31289076 - MIR SINE MIR -51 211 22 255 261 43 0 chr9 86573711 86573780 -31288847 + MER21B LTR ERV1 15 86 -777 2405 246 66 31 chr9 86573808 86574547 -31288080 + MER21B LTR ERV1 19 783 -80 1258 237 67 6 chr9 86574727 86575086 -31287541 + Zaphod DNA AcHobo 3651 4031 0 22 70 0 0 chr9 86575142 86575185 -31287442 + AT_rich Low_complexity Low_complexity 1 43 0 2043 124 13 0 chr9 86575201 86575499 -31287128 + AluSx SINE Alu 1 302 -10 2074 125 3 0 chr9 86576118 86576414 -31286213 + AluJo SINE Alu 1 297 -15 2352 62 3 0 chr9 86576478 86576782 -31285845 + AluY SINE Alu 1 305 -6 2061 132 0 0 chr9 86577064 86577368 -31285259 + AluSx SINE Alu 4 307 -5 364 174 211 28 chr9 86577720 86577829 -31284798 - L2 LINE L2 -7 3306 3178 757 228 43 22 chr9 86577831 86578015 -31284612 + L1MEc LINE L1 27 214 -6182 1918 203 37 37 chr9 86578020 86578441 -31284186 + L1MEc LINE L1 1726 2149 -4247 2030 98 7 19 chr9 86578441 86578748 -31283879 + AluSx SINE Alu 1 303 -9 1918 203 37 37 chr9 86578748 86578867 -31283760 + L1MEc LINE L1 2148 2266 -4130 3947 268 104 16 chr9 86578880 86579852 -31282775 - L2 LINE L2 -148 3165 2000 1761 142 6 38 chr9 86579852 86580168 -31282459 + AluJb SINE Alu 1 306 -6 3947 268 104 16 chr9 86580168 86580669 -31281958 - L2 LINE L2 -1313 2000 1545 566 316 106 25 chr9 86581096 86581625 -31281002 - L2 LINE L2 -1199 2115 1544 3734 129 29 57 chr9 86581954 86582223 -31280404 + L1MA7 LINE L1 5559 5834 -457 2072 104 0 0 chr9 86582223 86582524 -31280103 + AluSg SINE Alu 1 301 0 3734 129 29 57 chr9 86582524 86582975 -31279652 + L1MA7 LINE L1 5834 6260 -31 24 0 0 0 chr9 86583051 86583075 -31279552 + AT_rich Low_complexity Low_complexity 1 24 0 182 105 26 0 chr9 86583106 86583144 -31279483 + A-rich Low_complexity Low_complexity 5 43 0 189 0 0 0 chr9 86583349 86583370 -31279257 + (A)n Simple_repeat Simple_repeat 1 21 0 1405 125 24 113 chr9 86583473 86583801 -31278826 + AluYb8 SINE Alu 1 299 -19 2118 114 7 3 chr9 86583812 86584120 -31278507 - AluSc SINE Alu 0 309 1 531 227 7 71 chr9 86584723 86584789 -31277838 + MER45A DNA AcHobo 47 101 -1480 1623 161 6 26 chr9 86584789 86585100 -31277527 - AluJb SINE Alu -7 305 1 531 227 7 71 chr9 86585100 86585174 -31277453 + MER45A DNA AcHobo 101 178 0 1983 128 0 0 chr9 86585271 86585572 -31277055 + AluSx SINE Alu 1 301 0 199 173 96 39 chr9 86586000 86586052 -31276575 - L2 LINE L2 -2 3311 3257 1667 170 0 35 chr9 86586209 86586521 -31276106 + AluJo SINE Alu 1 301 -11 2162 115 0 0 chr9 86586642 86586947 -31275680 - AluSx SINE Alu -6 306 2 707 139 37 0 chr9 86586956 86587064 -31275563 - FLAM_A SINE Alu -11 131 20 301 275 107 81 chr9 86587163 86587587 -31275040 - L1ME4a LINE L1 -125 5996 5555 2201 89 7 0 chr9 86587587 86587879 -31274748 + AluSx SINE Alu 1 294 -18 301 275 107 81 chr9 86587879 86587959 -31274668 - L1ME4a LINE L1 -566 5555 5479 568 213 43 87 chr9 86588017 86588224 -31274403 - MIR SINE MIR -12 250 53 625 273 59 16 chr9 86588231 86588418 -31274209 + MIR SINE MIR 68 262 0 1692 159 28 0 chr9 86588613 86588902 -31273725 - AluJo SINE Alu -15 297 1 2567 315 83 23 chr9 86589116 86590403 -31272224 - L2 LINE L2 0 3313 1925 2230 100 3 6 chr9 86590403 86590714 -31271913 + AluSg SINE Alu 1 310 0 2567 315 83 23 chr9 86590714 86590813 -31271814 - L2 LINE L2 -1388 1925 1833 391 293 0 19 chr9 86590770 86590876 -31271751 + MIR SINE MIR 17 120 -142 * 301 228 43 99 chr9 86591749 86591911 -31270716 - MER117 DNA MER1_type 0 197 45 2130 99 0 0 chr9 86592036 86592344 -31270283 - AluSx SINE Alu 0 308 1 470 243 19 0 chr9 86592494 86592601 -31270026 - MER5A DNA MER1_type -77 112 4 327 164 0 0 chr9 86593037 86593098 -31269529 + CT-rich Low_complexity Low_complexity 4 64 0 792 119 27 2 chr9 86593105 86593339 -31269288 - AluJb SINE Alu -23 289 1 374 302 101 20 chr9 86593644 86593781 -31268846 + MIR SINE MIR 36 161 -101 1783 134 4 0 chr9 86593781 86594043 -31268584 + AluSx SINE Alu 1 263 -49 191 61 30 0 chr9 86594043 86594076 -31268551 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 210 191 0 0 chr9 86594982 86595024 -31267603 + CT-rich Low_complexity Low_complexity 3 44 0 452 318 109 45 chr9 86595247 86595668 -31266959 + L2 LINE L2 2825 3272 0 485 288 11 42 chr9 86595675 86595890 -31266737 + MIR SINE MIR 14 216 -46 1788 138 7 17 chr9 86596293 86596589 -31266038 - AluSx SINE Alu -19 293 1 184 268 0 0 chr9 86596604 86596645 -31265982 - MIR3 SINE MIR -32 176 136 363 288 17 25 chr9 86597117 86597235 -31265392 + MIR SINE MIR 30 146 -62 352 339 55 59 chr9 86597618 86598161 -31264466 + L2 LINE L2 2149 2689 -625 605 253 60 0 chr9 86598178 86598328 -31264299 - MER5B DNA MER1_type -19 159 1 237 167 62 0 chr9 86598433 86598481 -31264146 + MER5B DNA MER1_type 128 178 0 211 213 21 0 chr9 86598524 86598571 -31264056 - L2 LINE L2 -665 2649 2602 2238 96 3 0 chr9 86598623 86598924 -31263703 + AluSx SINE Alu 1 302 -10 192 170 0 94 chr9 86599470 86599523 -31263104 - MIR SINE MIR -145 63 16 2274 99 3 3 chr9 86599782 86600094 -31262533 + AluSq SINE Alu 1 312 -1 255 300 69 22 chr9 86600126 86600314 -31262313 + MIR SINE MIR 64 262 0 2279 106 0 0 chr9 86600643 86600954 -31261673 + AluSx SINE Alu 1 311 -1 499 236 9 0 chr9 86601081 86601191 -31261436 - Charlie8 DNA MER1_type -2184 233 123 1022 142 24 0 chr9 86601207 86601376 -31261251 - AluSp SINE Alu -4 309 137 2218 79 0 13 chr9 86601518 86601821 -31260806 + AluSx SINE Alu 1 299 -13 195 234 0 43 chr9 86601928 86601975 -31260652 + MER5B DNA MER1_type 6 50 -128 1552 168 13 27 chr9 86601993 86602291 -31260336 - AluJo SINE Alu -16 296 3 625 254 0 0 chr9 86602292 86602430 -31260197 + MER5B DNA MER1_type 36 173 -5 211 273 18 0 chr9 86602451 86602506 -31260121 + MER5A DNA MER1_type 9 64 -125 199 382 56 0 chr9 86602599 86602688 -31259939 - MER5A DNA MER1_type -87 102 9 1613 209 37 6 chr9 86602709 86603035 -31259592 + MER58B DNA MER1_type 6 341 0 322 204 34 129 chr9 86603041 86603188 -31259439 + MIR SINE MIR 33 165 -97 1775 120 0 8 chr9 86603419 86603678 -31258949 + AluSx SINE Alu 1 257 -55 566 263 19 62 chr9 86603818 86604027 -31258600 + LTR41 LTR ERVL 1 200 -573 2056 125 0 3 chr9 86604292 86604588 -31258039 - AluSx SINE Alu -17 295 1 369 242 8 40 chr9 86604657 86604781 -31257846 + LTR41 LTR ERVL 583 702 -71 278 192 0 0 chr9 86604794 86604846 -31257781 + L1MB3 LINE L1 5920 5971 -209 1772 149 10 7 chr9 86604847 86605142 -31257485 + AluJb SINE Alu 1 296 -16 201 263 0 0 chr9 86605164 86605221 -31257406 + A-rich Low_complexity Low_complexity 1 57 0 1087 139 4 112 chr9 86605223 86605415 -31257212 + L1MB3 LINE L1 5953 6111 -72 524 224 32 8 chr9 86605415 86605540 -31257087 + FLAM_C SINE Alu 2 129 -4 1087 139 4 112 chr9 86605540 86605606 -31257021 + L1MB3 LINE L1 6111 6183 0 2100 110 10 3 chr9 86605741 86606050 -31256577 - AluSp SINE Alu -2 311 1 2572 113 16 71 chr9 86606703 86606959 -31255668 - MSTA LTR MaLR 0 428 206 1925 126 36 0 chr9 86606959 86607260 -31255367 + AluSq SINE Alu 1 312 -1 2572 113 16 71 chr9 86607260 86607456 -31255171 - MSTA LTR MaLR -222 206 1 506 252 53 20 chr9 86607499 86607650 -31254977 + MER117 DNA MER1_type 42 197 0 1544 143 62 0 chr9 86607715 86607959 -31254668 + AluJo SINE Alu 1 259 -53 240 35 0 0 chr9 86608669 86608698 -31253929 + (TC)n Simple_repeat Simple_repeat 2 30 0 728 252 67 54 chr9 86609322 86609635 -31252992 + L1MC5 LINE L1 7214 7530 -431 1507 196 3 34 chr9 86610149 86610470 -31252157 - AluJo SINE Alu -1 311 1 511 230 59 89 chr9 86610800 86610933 -31251694 + MLT1J LTR MaLR 231 354 -157 1812 161 0 0 chr9 86610933 86611231 -31251396 - AluJb SINE Alu -14 298 1 511 230 59 89 chr9 86611231 86611367 -31251260 + MLT1J LTR MaLR 354 492 -19 1976 135 0 0 chr9 86611574 86611855 -31250772 + AluSx SINE Alu 1 281 -31 2502 41 0 28 chr9 86611856 86612176 -31250451 + AluY SINE Alu 1 311 0 413 311 63 46 chr9 86612372 86612610 -31250017 + MIR SINE MIR 10 251 -11 535 335 45 5 chr9 86612684 86612908 -31249719 - L3 LINE CR1 -14 1563 1331 541 231 151 91 chr9 86613130 86613231 -31249396 + MER102b DNA MER1_type 22 115 -1313 2252 78 24 0 chr9 86613231 86613525 -31249102 + AluSq SINE Alu 1 301 -12 541 231 151 91 chr9 86613525 86613721 -31248906 + MER102b DNA MER1_type 115 337 -4 258 344 0 0 chr9 86613929 86614019 -31248608 + L1ME4a LINE L1 5725 5814 -352 232 161 23 46 chr9 86614019 86614106 -31248521 + (TATAA)n Simple_repeat Simple_repeat 3 87 0 379 291 30 67 chr9 86614136 86614301 -31248326 + L1ME4a LINE L1 5869 6027 -94 1994 128 3 3 chr9 86614304 86614608 -31248019 + AluSq SINE Alu 1 304 -9 854 167 8 0 chr9 86615583 86615715 -31246912 - FLAM_C SINE Alu 0 133 1 3766 153 23 52 chr9 86615747 86615952 -31246675 + L1MB3 LINE L1 5417 5626 -557 2328 82 0 3 chr9 86615952 86616255 -31246372 + AluSc SINE Alu 1 302 -7 3766 153 23 52 chr9 86616255 86616314 -31246313 + L1MB3 LINE L1 5626 5685 -498 1710 151 29 11 chr9 86616314 86616627 -31246000 - AluSx SINE Alu 0 318 1 3766 153 23 52 chr9 86616627 86617143 -31245484 + L1MB3 LINE L1 5685 6176 -7 682 181 0 96 chr9 86617486 86617652 -31244975 - L1M3 LINE L1 -583 5600 5451 2091 101 0 29 chr9 86618024 86618332 -31244295 + AluSx SINE Alu 1 299 -13 217 419 11 0 chr9 86618333 86618426 -31244201 - MIR SINE MIR -85 123 30 1749 233 71 79 chr9 86618574 86619221 -31243406 + MLT1E1 LTR MaLR 13 654 0 483 170 75 0 chr9 86619327 86619421 -31243206 + AluSg1 SINE Alu 1 101 -208 2298 86 7 0 chr9 86619560 86619863 -31242764 + AluSq SINE Alu 1 305 -8 387 277 0 10 chr9 86619939 86620040 -31242587 - MIR SINE MIR -50 212 113 342 238 209 0 chr9 86620053 86620158 -31242469 - L2 LINE L2 -5 3308 3182 190 358 73 32 chr9 86620160 86620283 -31242344 - MIR SINE MIR -124 138 11 2617 174 18 51 chr9 86620352 86620486 -31242141 - L1MC3 LINE L1 -584 7201 7064 2248 86 13 0 chr9 86620486 86620789 -31241838 - AluSp SINE Alu -6 307 1 2617 174 18 51 chr9 86620789 86621199 -31241428 - L1MC3 LINE L1 -721 7064 6675 4808 158 45 26 chr9 86621300 86621318 -31241309 + L1MB7 LINE L1 4940 4956 -1228 2211 92 0 0 chr9 86621318 86621647 -31240980 + AluSq SINE Alu 1 313 0 4808 158 45 26 chr9 86621647 86622283 -31240344 + L1MB7 LINE L1 4956 5578 -606 2208 116 0 0 chr9 86622283 86622593 -31240034 + AluSq SINE Alu 1 310 -3 2026 120 0 0 chr9 86622595 86622906 -31239721 + AluSq SINE Alu 1 311 0 4808 158 45 26 chr9 86622906 86623457 -31239170 + L1MB7 LINE L1 5578 6168 -16 901 164 86 0 chr9 86623517 86623669 -31238958 + FRAM SINE Alu 1 165 -1 707 277 89 20 chr9 86623829 86623854 -31238773 - L1MC/D LINE L1 -714 5619 5597 721 205 16 0 chr9 86623854 86623981 -31238646 - FLAM_C SINE Alu -4 129 1 707 277 89 20 chr9 86623981 86624307 -31238320 - L1MC/D LINE L1 -736 5597 5254 1932 142 3 0 chr9 86624350 86624660 -31237967 + AluSx SINE Alu 1 311 -1 375 293 128 6 chr9 86624970 86625134 -31237493 + MIR SINE MIR 71 254 -8 1145 238 55 79 chr9 86625323 86625870 -31236757 - L1MC5 LINE L1 -44 7917 7384 180 77 0 0 chr9 86626054 86626080 -31236547 + (TCCA)n Simple_repeat Simple_repeat 3 28 0 292 299 48 135 chr9 86626095 86626331 -31236296 - L2 LINE L2 -7 3265 3083 2202 113 3 0 chr9 86626331 86626641 -31235986 + AluSp SINE Alu 1 311 -2 292 299 48 135 chr9 86626641 86626842 -31235785 - L2 LINE L2 -189 3083 2866 308 288 86 0 chr9 86627734 86627873 -31234754 - MIR3 SINE MIR -39 169 19 506 288 72 51 chr9 86627919 86628155 -31234472 - MIR SINE MIR 0 262 22 502 276 185 50 chr9 86628802 86629077 -31233550 - L2 LINE L2 -3 3310 2973 1667 185 0 10 chr9 86629077 86629390 -31233237 + AluJb SINE Alu 1 310 -2 502 276 185 50 chr9 86629390 86629477 -31233150 - L2 LINE L2 -340 2973 2899 379 203 34 34 chr9 86629487 86629605 -31233022 - MER33 DNA MER1_type -1 362 245 2115 96 0 0 chr9 86629716 86629997 -31232630 - AluSx SINE Alu -31 281 1 382 147 279 39 chr9 86630028 86630157 -31232470 - MER33 DNA MER1_type -159 165 6 1820 140 58 0 chr9 86631635 86631927 -31230700 + AluSx SINE Alu 1 309 -3 1863 149 0 3 chr9 86632009 86632311 -31230316 + AluJb SINE Alu 5 305 -7 196 245 19 57 chr9 86632429 86632482 -31230145 - MIR SINE MIR -50 212 162 879 198 152 35 chr9 86632483 86632766 -31229861 + MER46C DNA MER2_type 1 316 -22 2270 93 0 0 chr9 86632779 86633079 -31229548 - AluSc SINE Alu -9 300 1 1913 148 3 3 chr9 86633128 86633426 -31229201 - AluJb SINE Alu -14 298 1 268 192 19 0 chr9 86633426 86633478 -31229149 - MIR SINE MIR -111 151 99 513 331 39 6 chr9 86633806 86633984 -31228643 + MIR SINE MIR 79 262 0 282 88 138 88 chr9 86634131 86634169 -31228458 + L1MB2 LINE L1 6082 6117 -54 2381 60 0 3 chr9 86634169 86634468 -31228159 + AluY SINE Alu 1 298 -13 282 88 138 88 chr9 86634468 86634509 -31228118 + L1MB2 LINE L1 6117 6165 -6 308 26 0 24 chr9 86634509 86634551 -31228076 + AluSc SINE Alu 98 134 -165 2239 90 0 3 chr9 86634551 86634850 -31227777 + AluSg SINE Alu 1 298 -12 825 184 6 58 chr9 86635409 86635508 -31227119 - MER5A DNA MER1_type -24 165 77 2038 105 34 0 chr9 86635508 86635802 -31226825 - AluSx SINE Alu -8 304 1 825 184 6 58 chr9 86635802 86635876 -31226751 - MER5A DNA MER1_type -112 77 1 300 213 25 33 chr9 86636552 86636674 -31225953 + (TG)n Simple_repeat Simple_repeat 2 122 0 617 206 36 98 chr9 86637072 86637109 -31225518 + MIR3 SINE MIR 20 58 -150 1966 128 7 0 chr9 86637109 86637399 -31225228 + AluSc SINE Alu 1 292 -17 2425 61 0 6 chr9 86637401 86637712 -31224915 + AluY SINE Alu 1 309 -2 617 206 36 98 chr9 86637712 86637865 -31224762 + MIR3 SINE MIR 59 201 -7 1972 151 25 0 chr9 86638361 86638678 -31223949 + MER7A DNA MER2_type 2 324 -22 2114 115 10 0 chr9 86638684 86639062 -31223565 + AluSq SINE Alu 1 381 0 2535 121 21 52 chr9 86639091 86639350 -31223277 - MLT1C LTR MaLR -31 436 191 2290 69 0 7 chr9 86639350 86639662 -31222965 - AluY SINE Alu 0 310 1 2535 121 21 52 chr9 86639662 86639821 -31222806 - MLT1C LTR MaLR -276 191 29 2167 109 0 3 chr9 86640059 86640362 -31222265 - AluSq SINE Alu -11 302 1 1507 176 67 0 chr9 86640988 86641276 -31221351 + AluJb SINE Alu 1 306 0 789 240 35 126 chr9 86641523 86641985 -31220642 + LTR16B LTR ERVL 38 457 -7 268 198 12 86 chr9 86642010 86642091 -31220536 + L1M3 LINE L1 5426 5500 -671 2200 82 0 3 chr9 86642092 86642386 -31220241 + AluSg SINE Alu 1 293 -17 458 116 14 0 chr9 86642391 86642460 -31220167 + L1MB3 LINE L1 6071 6140 -43 1825 150 20 0 chr9 86642460 86642754 -31219873 + AluSx SINE Alu 1 300 -12 1963 115 7 10 chr9 86642766 86643061 -31219566 + AluSx SINE Alu 3 296 -16 784 181 0 0 chr9 86643072 86643210 -31219417 + AluJb SINE Alu 172 309 -3 242 89 18 18 chr9 86643219 86643275 -31219352 + L1MB3 LINE L1 6127 6182 -1 2037 125 3 13 chr9 86644144 86644455 -31218172 + AluSx SINE Alu 1 308 -4 395 302 143 0 chr9 86644748 86644874 -31217753 + MIR SINE MIR 13 156 -106 2252 79 3 7 chr9 86644881 86645186 -31217441 + AluSg1 SINE Alu 1 304 -5 299 329 0 0 chr9 86645216 86645301 -31217326 - MIR SINE MIR 0 262 178 219 280 21 75 chr9 86645430 86645523 -31217104 - MIR SINE MIR -115 147 60 592 259 19 68 chr9 86645832 86646017 -31216610 + L1ME3A LINE L1 5599 5769 -401 2005 128 7 0 chr9 86646017 86646315 -31216312 + AluSx SINE Alu 1 300 -12 592 259 19 68 chr9 86646315 86646395 -31216232 + L1ME3A LINE L1 5769 5851 -319 712 155 34 34 chr9 86646398 86646546 -31216081 + L1MA10 LINE L1 5762 5909 -403 663 221 22 0 chr9 86646546 86646682 -31215945 + AluSp/q SINE Alu 164 302 -11 1989 169 54 26 chr9 86646699 86647124 -31215503 + L1MA10 LINE L1 5895 6331 -3 2089 102 7 0 chr9 86647172 86647467 -31215160 + AluSx SINE Alu 1 297 -15 26 0 0 0 chr9 86647467 86647493 -31215134 + AT_rich Low_complexity Low_complexity 1 26 0 32 26 0 0 chr9 86647683 86647722 -31214905 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr9 86647801 86647822 -31214805 + AT_rich Low_complexity Low_complexity 1 21 0 629 156 82 44 chr9 86647822 86647957 -31214670 - FLAM_C SINE Alu -2 141 2 2079 126 0 0 chr9 86648051 86648345 -31214282 - AluSx SINE Alu -18 294 1 209 231 336 0 chr9 86648417 86648521 -31214106 - L2 LINE L2 -1 3271 3133 204 246 215 31 chr9 86648940 86649005 -31213622 - L2 LINE L2 -47 3225 3149 902 143 0 26 chr9 86649088 86649242 -31213385 + FAM SINE Alu 18 167 -18 203 343 97 15 chr9 86649466 86649600 -31213027 + L2 LINE L2 3127 3271 -1 425 299 0 22 chr9 86649905 86650042 -31212585 - MIR SINE MIR -50 212 79 2157 112 0 3 chr9 86650248 86650551 -31212076 + AluSg SINE Alu 1 302 -8 34 0 0 0 chr9 86650959 86650993 -31211634 + AT_rich Low_complexity Low_complexity 1 34 0 1898 110 72 0 chr9 86651002 86651293 -31211334 + AluSq SINE Alu 1 312 -1 2056 106 3 0 chr9 86651356 86651673 -31210954 + AluSp SINE Alu 1 318 0 2206 97 0 13 chr9 86651844 86652155 -31210472 + AluSx SINE Alu 1 307 -5 1215 141 33 0 chr9 86652572 86652756 -31209871 - MER20 DNA MER1_type 0 219 30 349 300 29 42 chr9 86653295 86653433 -31209194 - MIR SINE MIR -46 162 33 645 203 8 0 chr9 86653747 86653865 -31208762 + FLAM_C SINE Alu 1 119 -14 338 60 0 20 chr9 86653872 86653922 -31208705 + (GGGA)n Simple_repeat Simple_repeat 4 52 0 1004 166 0 22 chr9 86654007 86654188 -31208439 - AluJb SINE Alu -1 311 135 29 28 0 0 chr9 86654244 86654280 -31208347 + AT_rich Low_complexity Low_complexity 1 36 0 22 56 0 0 chr9 86654311 86654347 -31208280 + AT_rich Low_complexity Low_complexity 1 36 0 1975 128 0 0 chr9 86654351 86654640 -31207987 + AluSx SINE Alu 1 289 -23 819 174 53 122 chr9 86654651 86654752 -31207875 - L1MA9 LINE L1 -28 6284 6178 2310 76 7 0 chr9 86654752 86655053 -31207574 - AluSc SINE Alu -5 304 2 819 174 53 122 chr9 86655053 86655172 -31207455 - L1MA9 LINE L1 -134 6178 6052 181 0 0 0 chr9 86655172 86655192 -31207435 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 2038 109 0 3 chr9 86655192 86655475 -31207152 - AluSx SINE Alu -30 282 1 819 174 53 122 chr9 86655475 86655635 -31206992 - L1MA9 LINE L1 -258 6054 5942 240 81 0 0 chr9 86655635 86655672 -31206955 - Alu SINE Alu -4 298 262 1152 112 0 0 chr9 86655672 86655833 -31206794 - AluSx SINE Alu -151 161 1 1116 125 0 0 chr9 86655843 86656011 -31206616 - AluSp SINE Alu -10 303 136 444 165 18 28 chr9 86656014 86656123 -31206504 - L1MA9 LINE L1 -360 5952 5845 1039 137 10 103 chr9 86656123 86656295 -31206332 + L1MA5 LINE L1 5625 5725 -575 1882 115 3 54 chr9 86656295 86656608 -31206019 + AluSq SINE Alu 9 305 -8 1039 137 10 103 chr9 86656608 86656742 -31205885 + L1MA5 LINE L1 5725 5870 -430 1588 166 39 0 chr9 86657633 86657916 -31204711 + AluSx SINE Alu 1 294 -18 331 160 6 216 chr9 86658099 86658175 -31204452 - MER112 DNA MER1_type -90 170 150 1943 117 0 4 chr9 86658175 86658474 -31204153 - AluSg SINE Alu 0 306 9 331 160 6 216 chr9 86658474 86658576 -31204051 - MER112 DNA MER1_type -110 150 28 267 235 47 35 chr9 86658614 86658699 -31203928 - MIR SINE MIR -78 184 99 269 289 78 23 chr9 86658763 86658891 -31203736 - MER5A DNA MER1_type -29 160 26 1734 129 4 0 chr9 86659363 86659627 -31203000 + AluSq SINE Alu 42 306 -7 1958 137 3 0 chr9 86659640 86659933 -31202694 + AluSx SINE Alu 1 294 -18 2309 97 0 0 chr9 86660235 86660544 -31202083 + AluSc SINE Alu 1 309 0 328 303 16 21 chr9 86660881 86660995 -31201632 + MIR SINE MIR 7 122 -86 2075 107 3 7 chr9 86661994 86662294 -31200333 + AluSx SINE Alu 1 299 -13 2136 110 3 3 chr9 86662302 86662610 -31200017 + AluSg SINE Alu 1 308 -2 2045 65 11 4 chr9 86662657 86662917 -31199710 + AluY SINE Alu 1 262 -49 299 299 0 13 chr9 86663064 86663141 -31199486 - MIR SINE MIR -155 107 32 195 69 0 0 chr9 86663141 86663170 -31199457 + (A)n Simple_repeat Simple_repeat 1 29 0 424 279 44 0 chr9 86663625 86663893 -31198734 - L1MC4 LINE L1 0 8042 7713 504 306 22 22 chr9 86664371 86664551 -31198076 - MIR SINE MIR 0 262 83 249 236 25 129 chr9 86664774 86664823 -31197804 - MIR SINE MIR -54 154 101 2091 115 17 0 chr9 86664823 86665119 -31197508 + AluSx SINE Alu 1 301 -11 249 236 25 129 chr9 86665119 86665193 -31197434 - MIR SINE MIR -107 101 40 273 359 36 24 chr9 86665395 86665562 -31197065 + L1M3c LINE L1 858 1026 -5637 1860 235 37 41 chr9 86665619 86666087 -31196540 + L1M3c LINE L1 1241 1672 -4981 2249 98 0 0 chr9 86666087 86666382 -31196245 - AluSx SINE Alu -17 295 1 1860 235 37 41 chr9 86666382 86666572 -31196055 + L1M3c LINE L1 1672 1861 -4792 2104 177 40 18 chr9 86666580 86667027 -31195600 + L1MA10 LINE L1 5867 6323 -11 670 96 64 0 chr9 86667064 86667158 -31195469 + AluJ/FLAM SINE Alu 2 101 -211 276 250 170 0 chr9 86667197 86667297 -31195330 + MIR SINE MIR 48 164 -98 229 282 14 28 chr9 86667362 86667433 -31195194 - MIR SINE MIR -79 183 114 192 339 89 81 chr9 86667443 86667567 -31195060 + L2 LINE L2 3139 3263 -9 2029 111 3 14 chr9 86667577 86667874 -31194753 + AluSg1 SINE Alu 1 294 -15 336 24 0 0 chr9 86667874 86667915 -31194712 + (CA)n Simple_repeat Simple_repeat 2 42 0 28 0 0 0 chr9 86668328 86668356 -31194271 + AT_rich Low_complexity Low_complexity 1 28 0 2107 108 0 19 chr9 86668356 86668671 -31193956 + AluSc SINE Alu 1 309 0 834 161 0 0 chr9 86668679 86668797 -31193830 - FLAM_C SINE Alu -15 118 1 2196 98 0 9 chr9 86669128 86669443 -31193184 + AluSx SINE Alu 1 312 0 2215 107 3 0 chr9 86669461 86669770 -31192857 + AluSx SINE Alu 1 310 -2 690 214 0 14 chr9 86670139 86670279 -31192348 + FLAM_C SINE Alu 3 140 -3 266 328 55 8 chr9 86670409 86670537 -31192090 - MIR SINE MIR -81 181 48 183 80 0 0 chr9 86671431 86671456 -31191171 + (CACCC)n Simple_repeat Simple_repeat 1 25 0 668 175 79 0 chr9 86672980 86673106 -31189521 - AluJb SINE Alu -176 136 1 518 146 22 22 chr9 86673106 86673194 -31189433 - AluSg/x SINE Alu -16 296 209 1546 110 0 0 chr9 86673226 86673435 -31189192 - AluSq SINE Alu -104 209 1 248 158 0 0 chr9 86673523 86673561 -31189066 + MER57A LTR ERV1 295 332 -71 180 77 0 0 chr9 86673563 86673589 -31189038 + (TAA)n Simple_repeat Simple_repeat 3 28 0 502 258 214 32 chr9 86673659 86673907 -31188720 - L2 LINE L2 -1 3312 3020 715 303 49 12 chr9 86674051 86674295 -31188332 + MIR SINE MIR 8 260 -2 2151 101 0 3 chr9 86674295 86674603 -31188024 - AluSq SINE Alu -6 307 1 308 200 43 0 chr9 86674625 86674695 -31187932 - L1ME LINE L1 -303 5818 5746 1983 145 3 0 chr9 86675080 86675384 -31187243 + AluSx SINE Alu 1 305 -7 1106 45 0 8 chr9 86676038 86676172 -31186455 + AluY SINE Alu 2 134 -177 2541 45 0 3 chr9 86676172 86676484 -31186143 + AluY SINE Alu 1 311 0 300 245 170 11 chr9 86676665 86676759 -31185868 + MIR SINE MIR 17 125 -83 194 353 0 0 chr9 86676776 86676827 -31185800 + L2 LINE L2 3205 3255 -17 2168 102 3 0 chr9 86677110 86677405 -31185222 + AluSp SINE Alu 2 297 -16 2119 119 0 0 chr9 86677415 86677717 -31184910 + AluSx SINE Alu 1 302 -10 1826 137 10 7 chr9 86678668 86678968 -31183659 + AluSg1 SINE Alu 1 301 -8 2110 125 0 0 chr9 86679170 86679473 -31183154 - AluSx SINE Alu -9 303 1 1494 144 52 46 chr9 86679784 86680089 -31182538 + AluJo SINE Alu 1 307 -5 206 77 51 0 chr9 86680125 86680164 -31182463 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 805 68 29 0 chr9 86680229 86680332 -31182295 - U6 snRNA snRNA 0 107 2 1964 136 7 0 chr9 86680361 86680656 -31181971 - AluSx SINE Alu -15 297 1 223 284 221 24 chr9 86680745 86680872 -31181755 + MIR3 SINE MIR 45 196 -12 1505 169 0 65 chr9 86680875 86681182 -31181445 - AluJo SINE Alu -15 297 11 549 84 0 0 chr9 86681470 86681541 -31181086 + Alu SINE Alu 6 76 -242 2150 113 0 0 chr9 86681556 86681866 -31180761 - AluSx SINE Alu -2 310 1 487 139 0 0 chr9 86681866 86681938 -31180689 - AluJ/FLAM SINE Alu -220 92 21 2219 85 0 7 chr9 86682182 86682477 -31180150 + AluY SINE Alu 2 294 -17 1867 112 4 0 chr9 86682667 86682926 -31179701 - AluSx SINE Alu -26 286 27 1693 175 0 16 chr9 86683239 86683554 -31179073 + AluJo SINE Alu 1 310 -2 195 284 68 68 chr9 86683612 86683774 -31178853 - L2 LINE L2 -238 3034 2873 1040 138 12 0 chr9 86683802 86683969 -31178658 - AluSq SINE Alu -11 302 134 2104 108 0 3 chr9 86683969 86684265 -31178362 - AluSg SINE Alu -15 295 1 311 85 43 0 chr9 86685330 86685377 -31177250 + AluJo/FLAM SINE Alu 84 132 -170 950 113 0 0 chr9 86685380 86685513 -31177114 + AluSq/x SINE Alu 1 133 -180 1975 88 34 3 chr9 86685651 86685946 -31176681 + AluSx SINE Alu 1 304 -8 886 150 0 0 chr9 86687134 86687267 -31175360 - FLAM_C SINE Alu 0 133 1 871 113 0 8 chr9 86687774 86687898 -31174729 + FLAM_C SINE Alu 1 123 -20 38 0 0 20 chr9 86687898 86687931 -31174696 + AT_rich Low_complexity Low_complexity 1 34 -14 946 92 145 0 chr9 86687931 86688083 -31174544 + L1PA11 LINE L1 6000 6173 -1 38 0 0 20 chr9 86688083 86688098 -31174529 + AT_rich Low_complexity Low_complexity 34 48 0 24 0 0 0 chr9 86688145 86688169 -31174458 + AT_rich Low_complexity Low_complexity 1 24 0 2111 117 3 0 chr9 86688500 86688800 -31173827 + AluSx SINE Alu 1 301 -11 573 204 73 0 chr9 86688910 86689047 -31173580 - L1ME4a LINE L1 -195 5926 5780 24 0 0 0 chr9 86689511 86689535 -31173092 + AT_rich Low_complexity Low_complexity 1 24 0 227 200 0 0 chr9 86691884 86691934 -31170693 + A-rich Low_complexity Low_complexity 5 54 0 593 235 227 8 chr9 86694338 86694602 -31168025 - L1ME3A LINE L1 -3 6167 5846 1965 108 14 0 chr9 86694602 86694900 -31167727 - AluSx SINE Alu 0 302 1 513 174 36 7 chr9 86694910 86695083 -31167544 - L1ME3A LINE L1 -386 5776 5559 464 265 126 35 chr9 86695079 86695589 -31167038 + L1ME LINE L1 4619 5081 -1081 * 2333 71 0 10 chr9 86695589 86695898 -31166729 + AluSc SINE Alu 1 306 -3 464 265 126 35 chr9 86695898 86696194 -31166433 + L1ME LINE L1 5081 5567 -595 344 108 47 0 chr9 86696709 86696773 -31165854 + AluJ/FLAM SINE Alu 24 78 -224 293 182 0 0 chr9 86696873 86696917 -31165710 - Alu SINE Alu -258 44 1 223 245 19 0 chr9 86697942 86697995 -31164632 - MIR SINE MIR -58 204 151 1849 136 3 23 chr9 86698002 86698312 -31164315 - AluSx SINE Alu -6 306 3 2119 92 33 7 chr9 86698339 86698643 -31163984 - AluSx SINE Alu 0 312 1 1681 127 88 0 chr9 86698645 86698929 -31163698 - AluSg SINE Alu -1 309 1 1746 159 10 10 chr9 86698931 86699227 -31163400 - AluJo SINE Alu -16 296 1 194 0 39 0 chr9 86699231 86699257 -31163370 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 2140 86 0 4 chr9 86699259 86699538 -31163089 - AluSg SINE Alu -29 281 4 522 225 0 63 chr9 86699788 86699882 -31162745 - FLAM_C SINE Alu -201 111 23 2012 87 30 24 chr9 86699882 86700180 -31162447 + AluSg1 SINE Alu 1 300 -9 522 225 0 63 chr9 86700180 86700196 -31162431 - FLAM_C SINE Alu -289 23 8 1554 116 0 22 chr9 86700314 86700546 -31162081 + AluSc SINE Alu 1 227 -82 352 342 92 4 chr9 86700583 86700811 -31161816 - L2 LINE L2 -341 2973 2726 2051 115 10 0 chr9 86701175 86701485 -31161142 + AluSq SINE Alu 1 313 0 198 103 0 0 chr9 86701591 86701620 -31161007 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 190 200 0 0 chr9 86701789 86701829 -31160798 + MIR SINE MIR 105 144 -64 478 302 39 18 chr9 86701929 86702214 -31160413 + L1M4 LINE L1 2736 3026 -3120 1577 185 0 7 chr9 86702214 86702500 -31160127 + AluJb SINE Alu 1 284 -28 219 36 0 0 chr9 86702516 86702544 -31160083 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1879 112 3 26 chr9 86704380 86704683 -31157944 - AluSx SINE Alu -16 296 1 1755 43 0 0 chr9 86704871 86705081 -31157546 - L1PA4 LINE L1 -8 6147 5938 2055 41 0 0 chr9 86705081 86705326 -31157301 + L1P LINE L1 4797 5041 -1105 605 224 157 31 chr9 86705357 86705580 -31157047 + MIR SINE MIR 12 262 0 439 289 37 30 chr9 86705584 86705719 -31156908 + L2 LINE L2 3137 3272 0 181 0 0 0 chr9 86706028 86706048 -31156579 + (TTG)n Simple_repeat Simple_repeat 2 180 0 1288 216 44 4 chr9 86706048 86706321 -31156306 - AluSx SINE Alu -1 303 1 24 53 0 0 chr9 86707472 86707510 -31155117 + AT_rich Low_complexity Low_complexity 1 38 0 210 37 0 0 chr9 86707635 86707662 -31154965 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1974 115 0 10 chr9 86707744 86708032 -31154595 + AluSg SINE Alu 13 297 -13 475 240 10 99 chr9 86709333 86709525 -31153102 + MIR SINE MIR 21 195 -67 1033 154 6 0 chr9 86710295 86710470 -31152157 - AluSp SINE Alu -4 309 134 2075 103 0 42 chr9 86710470 86710635 -31151992 - AluSx SINE Alu -14 298 151 2746 6 0 3 chr9 86710635 86710947 -31151680 - AluYa5 SINE Alu 0 311 1 2075 103 0 42 chr9 86710947 86711092 -31151535 - AluSx SINE Alu -161 151 1 1813 168 0 3 chr9 86711115 86711425 -31151202 - AluJo SINE Alu -3 309 1 265 211 0 18 chr9 86711488 86711545 -31151082 + L2 LINE L2 3257 3312 -1 467 174 0 0 chr9 86711579 86711648 -31150979 + AluS SINE Alu 1 69 -244 242 262 78 29 chr9 86711761 86711864 -31150763 - BSR/Beta Satellite Satellite -25 127 20 473 129 0 0 chr9 86712021 86712083 -31150544 - AluJ/FLAM SINE Alu -236 76 15 264 122 0 0 chr9 86712718 86712759 -31149868 + (TG)n Simple_repeat Simple_repeat 1 41 0 378 345 7 21 chr9 86712759 86712901 -31149726 - L2 LINE L2 -17 3255 3116 2506 37 0 0 chr9 86713528 86713825 -31148802 + AluY SINE Alu 1 297 -14 651 182 74 0 chr9 86714149 86714270 -31148357 + AluJ SINE Alu 3 132 -170 297 226 57 19 chr9 86714625 86714731 -31147896 - MIR SINE MIR -60 202 93 247 397 0 9 chr9 86714848 86714964 -31147663 - L2 LINE L2 -3 3269 3155 2086 130 3 0 chr9 86714966 86715273 -31147354 + AluSx SINE Alu 2 309 -3 1000 177 0 21 chr9 86715274 86715451 -31147176 + AluJ SINE Alu 125 299 -13 1857 141 10 10 chr9 86715451 86715764 -31146863 + AluSq SINE Alu 1 313 0 1000 177 0 21 chr9 86715764 86715778 -31146849 + AluJ SINE Alu 299 312 0 1872 151 26 0 chr9 86715786 86716090 -31146537 + AluSx SINE Alu 1 312 0 2190 99 3 6 chr9 86716216 86716528 -31146099 + AluY SINE Alu 1 311 0 942 106 43 0 chr9 86717184 86717325 -31145302 + MER2 DNA MER2_type 64 210 -135 1706 136 42 36 chr9 86717387 86717696 -31144931 + AluJb SINE Alu 2 312 0 313 153 56 14 chr9 86717701 86717773 -31144854 + MER2 DNA MER2_type 136 210 -135 264 150 233 33 chr9 86717817 86717877 -31144750 + MER2 DNA MER2_type 269 340 -5 291 326 41 47 chr9 86717897 86718069 -31144558 - L2 LINE L2 -212 3060 2890 467 239 77 17 chr9 86718805 86718922 -31143705 - MIR SINE MIR -65 143 20 216 360 77 56 chr9 86718983 86719164 -31143463 + L2 LINE L2 2313 2506 -808 1996 124 3 0 chr9 86719164 86719472 -31143155 + AluSq SINE Alu 1 309 0 216 360 77 56 chr9 86719472 86719574 -31143053 + L2 LINE L2 2506 2604 -710 1664 133 26 55 chr9 86719607 86719751 -31142876 + AluJb SINE Alu 1 148 -164 1779 107 0 0 chr9 86719751 86719993 -31142634 + AluSq SINE Alu 57 298 -15 1664 133 26 55 chr9 86719993 86720156 -31142471 + AluJb SINE Alu 148 299 -13 2322 76 3 0 chr9 86720290 86720591 -31142036 - AluSp SINE Alu -11 302 1 182 339 15 15 chr9 86720920 86720985 -31141642 + L2 LINE L2 3204 3268 -4 195 129 0 0 chr9 86721015 86721046 -31141581 + (TTCA)n Simple_repeat Simple_repeat 4 34 0 242 229 21 0 chr9 86721402 86721450 -31141177 - MIR SINE MIR -84 124 76 25 31 0 0 chr9 86722093 86722125 -31140502 + AT_rich Low_complexity Low_complexity 1 32 0 4127 75 0 16 chr9 86722141 86722690 -31139937 - L1PA7 LINE L1 -2 6152 5613 1679 129 65 0 chr9 86722791 86723032 -31139595 - MER46B DNA MER2_type -2555 176 38 1917 123 24 0 chr9 86723032 86723325 -31139302 + AluSx SINE Alu 1 300 -12 1679 129 65 0 chr9 86723325 86723362 -31139265 - MER46B DNA MER2_type -2693 38 5 225 311 82 16 chr9 86723365 86723487 -31139140 + L2 LINE L2 3148 3277 -36 2208 104 0 0 chr9 86723521 86723820 -31138807 + AluSx SINE Alu 7 305 -7 843 150 0 8 chr9 86723904 86724037 -31138590 + AluJo SINE Alu 3 134 -178 183 268 286 18 chr9 86724113 86724225 -31138402 - MIR SINE MIR -65 197 56 292 234 102 88 chr9 86725503 86725708 -31136919 + L2 LINE L2 1570 1777 -1537 194 210 306 0 chr9 86726876 86726938 -31135689 + MIR SINE MIR 57 137 -125 1888 114 0 0 chr9 86726970 86727232 -31135395 + AluSq SINE Alu 5 266 -47 210 143 0 0 chr9 86727642 86727677 -31134950 + (A)n Simple_repeat Simple_repeat 1 35 0 1389 99 0 5 chr9 86727683 86727884 -31134743 + AluSg/x SINE Alu 94 293 -17 300 303 48 41 chr9 86727959 86728104 -31134523 + MIR SINE MIR 80 225 -37 653 282 11 6 chr9 86728325 86728506 -31134121 + MIR SINE MIR 49 230 -32 2282 97 3 0 chr9 86728954 86729265 -31133362 + AluSp SINE Alu 1 312 -1 2227 109 3 0 chr9 86729530 86729842 -31132785 - AluSp SINE Alu 0 313 1 460 239 0 0 chr9 86729945 86730037 -31132590 + Tigger7 DNA MER2_type 1 92 -613 778 203 0 0 chr9 86730790 86730923 -31131704 + FLAM_C SINE Alu 1 133 0 1617 198 38 3 chr9 86730948 86731266 -31131361 + Tigger7 DNA MER2_type 69 397 -336 279 54 0 0 chr9 86731264 86731301 -31131326 + Tigger7 DNA MER2_type 2333 2369 -122 * 225 65 0 0 chr9 86731301 86731332 -31131295 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 784 157 0 0 chr9 86731334 86731449 -31131178 - AluSq/x SINE Alu -197 116 2 774 153 0 29 chr9 86732180 86732317 -31130310 - FLAM_C SINE Alu 0 133 1 245 217 113 52 chr9 86732477 86732592 -31130035 + MIR SINE MIR 13 134 -128 648 242 54 46 chr9 86732612 86732684 -31129943 - MER112 DNA MER1_type -2 258 188 2002 130 7 0 chr9 86732684 86732977 -31129650 - AluSx SINE Alu -17 295 1 648 242 54 46 chr9 86732977 86733144 -31129483 - MER112 DNA MER1_type -72 188 17 635 261 31 69 chr9 86733407 86733667 -31128960 - MIR SINE MIR 0 262 13 1192 68 0 0 chr9 86734125 86734273 -31128354 - AluSc SINE Alu -161 148 1 349 277 138 21 chr9 86734290 86734478 -31128149 - L1M4 LINE L1 -762 5384 5175 2252 92 0 16 chr9 86734513 86734818 -31127809 - AluSx SINE Alu -12 300 1 1570 149 7 23 chr9 86735142 86735443 -31127184 - AluJo SINE Alu -13 299 4 1784 154 0 10 chr9 86735808 86736113 -31126514 - AluJb SINE Alu -10 302 1 359 289 17 83 chr9 86736578 86736787 -31125840 + MIR SINE MIR 5 173 -89 2007 117 10 0 chr9 86736787 86737078 -31125549 + AluSx SINE Alu 1 294 -18 359 289 17 83 chr9 86737078 86737131 -31125496 + MIR SINE MIR 173 228 -34 2288 30 4 0 chr9 86737165 86737435 -31125192 - AluY SINE Alu -9 302 32 1891 111 17 0 chr9 86737543 86737832 -31124795 + AluSq SINE Alu 1 294 -19 2182 104 0 0 chr9 86737928 86738225 -31124402 - AluSg1 SINE Alu -11 298 2 1546 133 15 124 chr9 86738319 86738658 -31123969 + AluJb SINE Alu 7 308 -4 1870 113 4 0 chr9 86738658 86738922 -31123705 + AluSq SINE Alu 1 266 -47 210 143 0 0 chr9 86739332 86739367 -31123260 + (A)n Simple_repeat Simple_repeat 1 35 0 1389 99 0 5 chr9 86739373 86739574 -31123053 + AluSg/x SINE Alu 96 295 -17 300 303 48 41 chr9 86739649 86739794 -31122833 + MIR SINE MIR 80 225 -37 653 282 11 6 chr9 86740015 86740196 -31122431 + MIR SINE MIR 49 230 -32 2254 100 3 0 chr9 86740644 86740955 -31121672 + AluSp SINE Alu 1 312 -1 2227 109 3 0 chr9 86741220 86741532 -31121095 - AluSp SINE Alu 0 313 1 460 239 0 0 chr9 86741635 86741727 -31120900 + Tigger7 DNA MER2_type 1 92 -2395 778 203 0 0 chr9 86742480 86742613 -31120014 + FLAM_C SINE Alu 1 133 0 1419 207 41 3 chr9 86742638 86742928 -31119699 + Tigger7 DNA MER2_type 69 369 -364 451 241 14 76 chr9 86743057 86743202 -31119425 - MIR SINE MIR -111 151 16 1423 184 55 0 chr9 86743470 86743741 -31118886 - AluJo SINE Alu -26 286 1 296 312 36 26 chr9 86744496 86744671 -31117956 - MIR SINE MIR -52 210 35 220 169 42 84 chr9 86745557 86745628 -31116999 - MIR3 SINE MIR -21 187 120 237 233 189 33 chr9 86746003 86746093 -31116534 + L2 LINE L2 3210 3313 0 198 330 0 44 chr9 86746310 86746401 -31116226 + MIR3 SINE MIR 105 191 -17 243 236 229 90 chr9 86747106 86747277 -31115350 + MIR SINE MIR 20 208 -54 441 219 302 10 chr9 86747288 86747462 -31115165 - MIR SINE MIR 0 262 140 1673 140 0 78 chr9 86747462 86747783 -31114844 - AluJb SINE Alu -15 297 2 441 219 302 10 chr9 86747783 86747800 -31114827 - MIR SINE MIR -122 140 15 2095 114 0 0 chr9 86747906 86748203 -31114424 - AluSq SINE Alu -16 297 1 201 239 28 14 chr9 86748719 86748772 -31113855 + T-rich Low_complexity Low_complexity 1 57 -15 2113 99 71 3 chr9 86748772 86749094 -31113533 - L1PB1 LINE L1 -1 6150 5807 201 239 28 14 chr9 86749094 86749111 -31113516 + T-rich Low_complexity Low_complexity 57 72 0 1255 159 0 14 chr9 86749352 86749559 -31113068 - AluJb SINE Alu -22 290 87 195 293 106 24 chr9 86749605 86749728 -31112899 + MIR SINE MIR 8 140 -122 1011 201 0 32 chr9 86749797 86750016 -31112611 - AluJb SINE Alu -13 299 88 375 273 62 37 chr9 86750707 86750868 -31111759 + MIR SINE MIR 31 195 -67 647 276 31 41 chr9 86751057 86751253 -31111374 + MIR SINE MIR 29 222 -40 231 219 0 0 chr9 86751287 86751328 -31111299 - MIR SINE MIR -30 232 192 229 417 50 0 chr9 86751562 86751681 -31110946 - MIR SINE MIR -12 250 126 614 223 67 57 chr9 86751681 86751874 -31110753 + MIR SINE MIR 1 195 -67 2044 112 0 16 chr9 86751949 86752252 -31110375 + AluSx SINE Alu 3 300 -12 2058 127 0 0 chr9 86752642 86752941 -31109686 - AluSx SINE Alu -13 299 1 522 0 0 0 chr9 86752949 86753007 -31109620 + (TTA)n Simple_repeat Simple_repeat 2 59 0 1659 158 4 4 chr9 86753008 86753273 -31109354 - AluJb SINE Alu -47 265 1 180 306 83 0 chr9 86753501 86753573 -31109054 - MIR SINE MIR -90 118 41 * 410 251 91 67 chr9 86753556 86753907 -31108720 + L2 LINE L2 2868 3312 -1 2235 92 13 0 chr9 86753962 86754267 -31108360 + AluSq SINE Alu 1 309 -4 1151 149 145 13 chr9 86754267 86754495 -31108132 - L1MB7 LINE L1 -24 6160 5903 714 156 0 0 chr9 86754497 86754619 -31108008 - L1MB7 LINE L1 -417 5761 5640 207 0 0 0 chr9 86754635 86754658 -31107969 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 369 341 29 7 chr9 86755372 86755510 -31107117 - MIR SINE MIR -102 160 20 343 325 71 56 chr9 86755552 86755749 -31106878 - MIR SINE MIR -60 202 3 977 126 11 0 chr9 86755772 86755946 -31106681 + (TCCA)n Simple_repeat Simple_repeat 1 176 0 181 300 50 0 chr9 86755952 86756012 -31106615 - L2 LINE L2 -14 3299 3237 319 273 16 66 chr9 86756751 86756872 -31105755 - MER5A DNA MER1_type -58 131 17 527 229 201 0 chr9 86756891 86757035 -31105592 - MER5A DNA MER1_type -8 181 9 442 221 52 78 chr9 86757697 86757775 -31104852 + MIR SINE MIR 84 158 -104 966 142 108 40 chr9 86757775 86757951 -31104676 + MER5A DNA MER1_type 1 188 -1 442 221 52 78 chr9 86757951 86758026 -31104601 + MIR SINE MIR 158 233 -29 1991 141 0 3 chr9 86758073 86758379 -31104248 - AluSx SINE Alu -7 305 1 265 300 29 43 chr9 86758909 86759049 -31103578 - MIR SINE MIR -5 257 120 329 325 33 118 chr9 86759370 86759598 -31103029 - L2 LINE L2 -2 3270 3073 2046 130 3 7 chr9 86759598 86759905 -31102722 + AluSx SINE Alu 1 306 -6 329 325 33 118 chr9 86759905 86759981 -31102646 - L2 LINE L2 -199 3073 2992 22 0 0 0 chr9 86760997 86761019 -31101608 + AT_rich Low_complexity Low_complexity 1 22 0 348 274 8 52 chr9 86761117 86761237 -31101390 + MIR SINE MIR 59 169 -39 223 192 0 0 chr9 86761237 86761289 -31101338 - MER5C DNA MER1_type -2 322 271 2281 109 0 0 chr9 86761301 86761613 -31101014 - AluSx SINE Alu 0 312 1 24 0 0 0 chr9 86761613 86761637 -31100990 + AT_rich Low_complexity Low_complexity 1 24 0 533 236 39 8 chr9 86761760 86761887 -31100740 - MER5C DNA MER1_type -193 131 1 440 308 111 51 chr9 86762137 86762260 -31100367 + MIR SINE MIR 1 115 -147 185 65 32 0 chr9 86762260 86762291 -31100336 + (TTTAA)n Simple_repeat Simple_repeat 3 34 0 1674 138 11 7 chr9 86762291 86762567 -31100060 - AluJb SINE Alu -27 285 9 440 308 111 51 chr9 86762567 86762676 -31099951 + MIR SINE MIR 114 248 -14 384 269 46 8 chr9 86763053 86763183 -31099444 + MLT1L LTR MaLR 104 238 -377 584 139 0 0 chr9 86763183 86763269 -31099358 - FRAM/FAM SINE Alu -95 81 1 2084 106 7 3 chr9 86763287 86763579 -31099048 + AluSg SINE Alu 3 295 -15 413 253 118 44 chr9 86763587 86763827 -31098800 + MLT1L LTR MaLR 239 418 -93 282 29 0 0 chr9 86764257 86764292 -31098335 + (TG)n Simple_repeat Simple_repeat 1 35 0 1494 168 9 75 chr9 86764357 86764690 -31097937 - AluJo SINE Alu -1 311 1 250 342 13 0 chr9 86764914 86764993 -31097634 - L2 LINE L2 0 3272 3193 2295 94 0 3 chr9 86765110 86765417 -31097210 - AluSx SINE Alu -6 306 1 198 0 0 0 chr9 86765958 86765980 -31096647 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 2177 91 7 0 chr9 86765980 86766267 -31096360 - AluSp SINE Alu -20 293 2 2121 104 6 31 chr9 86766340 86766658 -31095969 - AluSq SINE Alu -3 310 1 669 213 46 46 chr9 86767368 86767584 -31095043 - MLT1A2 LTR MaLR 0 374 159 1315 122 56 0 chr9 86767591 86767804 -31094823 - AluSg SINE Alu -23 287 63 313 272 61 84 chr9 86768175 86768279 -31094348 - L1ME4a LINE L1 -171 5950 5852 2201 112 6 3 chr9 86768279 86768591 -31094036 - AluSq SINE Alu 0 313 1 313 272 61 84 chr9 86768591 86768699 -31093928 - L1ME4a LINE L1 -269 5852 5743 616 229 106 111 chr9 86768796 86768966 -31093661 - L2 LINE L2 -4 3309 3140 1865 161 0 16 chr9 86768966 86769282 -31093345 + AluJb SINE Alu 1 311 -1 616 229 106 111 chr9 86769282 86769517 -31093110 - L2 LINE L2 -173 3140 2906 281 315 22 0 chr9 86769608 86769700 -31092927 + L2 LINE L2 2601 2694 -620 495 249 207 5 chr9 86769759 86769952 -31092675 - MLT1K LTR MaLR -44 544 313 364 281 148 44 chr9 86770253 86770456 -31092171 + L2 LINE L2 2851 3074 -198 740 174 16 0 chr9 86770472 86770593 -31092034 - FLAM_A SINE Alu -12 130 8 431 271 21 76 chr9 86770656 86770800 -31091827 + L2 LINE L2 3137 3272 0 402 21 0 0 chr9 86770965 86771012 -31091615 + (TAGA)n Simple_repeat Simple_repeat 3 49 0 2580 109 25 5 chr9 86771012 86771380 -31091247 - MLT2A1 LTR ERVL -68 376 2 1367 141 128 8 chr9 86771380 86771629 -31090998 - AluSg SINE Alu -31 279 1 320 256 13 0 chr9 86771972 86772050 -31090577 - L2 LINE L2 -5 3267 3189 221 245 0 0 chr9 86772072 86772121 -31090506 + (TG)n Simple_repeat Simple_repeat 1 49 0 1703 153 21 17 chr9 86772181 86772469 -31090158 - AluSx SINE Alu -15 297 9 997 115 0 0 chr9 86772473 86772612 -31090015 - AluSq/x SINE Alu -174 139 1 25 0 0 0 chr9 86772718 86772743 -31089884 + AT_rich Low_complexity Low_complexity 1 25 0 2147 106 20 0 chr9 86773315 86773617 -31089010 - AluSx SINE Alu -4 308 1 393 285 146 4 chr9 86774908 86775108 -31087519 + MIR SINE MIR 13 235 -27 1772 84 0 0 chr9 86775543 86775781 -31086846 - AluSc SINE Alu -71 238 1 349 277 138 21 chr9 86775798 86775986 -31086641 - L1M4 LINE L1 -762 5384 5175 2252 92 0 16 chr9 86776021 86776326 -31086301 - AluSx SINE Alu -12 300 1 1453 151 13 23 chr9 86776650 86776949 -31085678 - AluJo SINE Alu -13 299 4 1784 154 0 10 chr9 86777314 86777619 -31085008 - AluJb SINE Alu -10 302 1 359 289 17 83 chr9 86778084 86778293 -31084334 + MIR SINE MIR 5 173 -89 2007 117 10 0 chr9 86778293 86778584 -31084043 + AluSx SINE Alu 1 294 -18 359 289 17 83 chr9 86778584 86778637 -31083990 + MIR SINE MIR 173 228 -34 2297 88 0 0 chr9 86778671 86778968 -31083659 - AluSx SINE Alu -9 303 7 225 311 82 16 chr9 86779002 86779124 -31083503 - L2 LINE L2 -36 3277 3148 2016 113 86 0 chr9 86779127 86779164 -31083463 + MER46B DNA MER2_type 5 37 -2694 1917 123 24 0 chr9 86779164 86779457 -31083170 - AluSx SINE Alu -12 300 1 2016 113 86 0 chr9 86779457 86779746 -31082881 + MER46B DNA MER2_type 37 234 -2 2260 62 28 0 chr9 86779875 86780165 -31082462 + AluY SINE Alu 1 298 -13 529 138 0 32 chr9 86780202 86780296 -31082331 - AluS SINE Alu -220 92 2 1573 166 43 0 chr9 86780300 86780578 -31082049 - AluJb SINE Alu -16 296 7 2087 106 0 17 chr9 86780641 86780942 -31081685 + AluSx SINE Alu 1 296 -16 373 321 91 6 chr9 86781233 86781398 -31081229 + MIR SINE MIR 28 206 -56 669 177 0 18 chr9 86781637 86781750 -31080877 + FLAM_C SINE Alu 23 133 -10 1986 112 7 26 chr9 86781844 86782149 -31080478 + AluSx SINE Alu 1 299 -13 270 297 195 8 chr9 86782157 86782285 -31080342 + MIR SINE MIR 4 155 -107 1425 194 26 0 chr9 86782320 86782588 -31080039 + AluJo SINE Alu 8 282 -30 1783 168 7 0 chr9 86782590 86782882 -31079745 - AluJo SINE Alu -17 295 2 505 186 52 10 chr9 86782897 86782994 -31079633 + Tigger7 DNA MER2_type 2387 2487 0 245 252 148 43 chr9 86783040 86783155 -31079472 + MIR SINE MIR 20 146 -62 577 237 122 6 chr9 86783169 86783325 -31079302 - MER5B DNA MER1_type 0 178 5 2055 121 3 0 chr9 86783364 86783661 -31078966 + AluSx SINE Alu 1 298 -14 348 318 32 13 chr9 86784611 86784719 -31077908 + (TCCA)n Simple_repeat Simple_repeat 3 116 -43 2207 112 0 0 chr9 86784719 86785023 -31077604 - AluSx SINE Alu -8 304 1 348 318 32 13 chr9 86785023 86785068 -31077559 + (TCCA)n Simple_repeat Simple_repeat 116 159 0 269 340 27 86 chr9 86785264 86785314 -31077313 - L2 LINE L2 -249 3023 2972 2046 178 22 58 chr9 86785314 86785508 -31077119 + Tigger2a DNA MER2_type 1 200 -2508 1618 185 3 16 chr9 86785508 86785821 -31076806 - AluJo SINE Alu -1 311 3 2046 178 22 58 chr9 86785821 86786076 -31076551 + Tigger2a DNA MER2_type 200 434 0 269 340 27 86 chr9 86786076 86786274 -31076353 - L2 LINE L2 -300 2972 2791 239 188 31 47 chr9 86786528 86786592 -31076035 + L2 LINE L2 3245 3307 -6 240 372 29 29 chr9 86786694 86786831 -31075796 + MIR SINE MIR 17 153 -55 1982 87 11 7 chr9 86786965 86787270 -31075357 - AluSx SINE Alu 0 311 6 736 240 48 10 chr9 86787478 86787686 -31074941 - LTR33 LTR ERVL -304 217 2 232 321 103 38 chr9 86787794 86787846 -31074781 + L2 LINE L2 3066 3113 -159 2253 103 0 0 chr9 86787846 86788148 -31074479 - AluSx SINE Alu -10 302 1 232 321 103 38 chr9 86788148 86788279 -31074348 + L2 LINE L2 3113 3261 -11 659 166 12 14 chr9 86788879 86789125 -31073502 + AluJ SINE Alu 2 296 -16 1787 140 35 0 chr9 86789305 86789590 -31073037 - AluSx SINE Alu -17 295 1 1596 171 23 26 chr9 86789616 86789926 -31072701 - AluJo SINE Alu 0 312 4 670 180 0 43 chr9 86789935 86790100 -31072527 - FLAM_C SINE Alu 0 143 9 582 220 94 16 chr9 86790207 86790398 -31072229 + Charlie4a DNA MER1_type 195 400 -108 2211 109 0 0 chr9 86790398 86790702 -31071925 - AluSx SINE Alu -8 304 1 2161 115 0 0 chr9 86790705 86791010 -31071617 - AluSg SINE Alu -5 305 1 1735 138 6 72 chr9 86791192 86791526 -31071101 - AluJb SINE Alu 0 312 1 194 119 48 0 chr9 86791813 86791855 -31070772 + (CATATA)n Simple_repeat Simple_repeat 5 48 0 421 290 71 3 chr9 86791868 86792022 -31070605 + MIR SINE MIR 19 180 -66 1295 179 91 42 chr9 86792042 86792145 -31070482 + AluJo SINE Alu 1 97 -205 2061 126 3 0 chr9 86792145 86792447 -31070180 - AluSx SINE Alu -9 303 1 1295 179 91 42 chr9 86792447 86792628 -31069999 + AluJo SINE Alu 97 299 -3 782 156 0 8 chr9 86792631 86792753 -31069874 + AluJo SINE Alu 4 124 -178 297 184 41 0 chr9 86792762 86792811 -31069816 + AluJo SINE Alu 129 179 -123 1121 177 10 0 chr9 86792811 86793009 -31069618 + AluJo SINE Alu 93 292 -20 498 281 162 11 chr9 86793836 86794021 -31068606 - MIR SINE MIR -49 213 1 1942 125 44 0 chr9 86794188 86794483 -31068144 + AluSg SINE Alu 1 308 -2 2238 100 10 3 chr9 86794860 86795171 -31067456 - AluSq SINE Alu 0 313 1 182 339 15 15 chr9 86795500 86795565 -31067062 + L2 LINE L2 3204 3268 -4 195 129 0 0 chr9 86795595 86795626 -31067001 + (TTCA)n Simple_repeat Simple_repeat 4 34 0 242 229 21 0 chr9 86795982 86796030 -31066597 - MIR SINE MIR -84 124 76 25 31 0 0 chr9 86796673 86796705 -31065922 + AT_rich Low_complexity Low_complexity 1 32 0 6814 70 13 3 chr9 86796721 86798087 -31064540 - L1PA7 LINE L1 -2 6152 4790 813 174 0 0 chr9 86798314 86798446 -31064181 + FLAM_C SINE Alu 1 132 -11 22 80 0 0 chr9 86798446 86798496 -31064131 + AT_rich Low_complexity Low_complexity 1 50 0 2251 92 0 0 chr9 86798514 86798807 -31063820 + AluSc SINE Alu 1 293 -16 758 171 0 23 chr9 86798858 86798987 -31063640 + FLAM_C SINE Alu 2 127 -6 1987 122 0 0 chr9 86799216 86799520 -31063107 + AluSg SINE Alu 1 304 0 596 284 76 5 chr9 86799581 86799856 -31062771 + L2 LINE L2 2775 3074 -239 1964 118 3 3 chr9 86799861 86800190 -31062437 + AluSp SINE Alu 1 329 0 1396 106 200 16 chr9 86800537 86800792 -31061835 + AluSg1 SINE Alu 7 308 -1 706 96 0 0 chr9 86800795 86800889 -31061738 + AluSq SINE Alu 135 228 -85 309 137 0 0 chr9 86800943 86800994 -31061633 + Alu SINE Alu 247 297 -5 21 0 0 0 chr9 86801203 86801224 -31061403 + AT_rich Low_complexity Low_complexity 1 21 0 2031 142 3 0 chr9 86801224 86801534 -31061093 - AluSx SINE Alu -1 311 1 257 284 181 37 chr9 86801768 86802011 -31060616 - L3 LINE CR1 -161 1416 1139 28 29 0 0 chr9 86802225 86802260 -31060367 + AT_rich Low_complexity Low_complexity 1 35 0 1840 148 0 10 chr9 86802271 86802568 -31060059 + AluSx SINE Alu 1 294 -18 1904 127 3 13 chr9 86803194 86803493 -31059134 - AluJb SINE Alu -16 296 1 194 303 20 71 chr9 86803528 86803627 -31059000 - L2 LINE L2 -333 2980 2887 878 103 0 0 chr9 86803628 86803744 -31058883 - FLAM_C SINE Alu -27 116 1 523 208 201 13 chr9 86803746 86803895 -31058732 - MER5A DNA MER1_type 0 189 13 203 125 25 0 chr9 86804750 86804790 -31057837 + T-rich Low_complexity Low_complexity 2 42 0 180 0 0 0 chr9 86804814 86804834 -31057793 + (TTA)n Simple_repeat Simple_repeat 2 21 0 316 295 96 26 chr9 86804851 86805007 -31057620 - L1ME4a LINE L1 -216 5905 5739 1262 252 110 8 chr9 86805037 86805510 -31057117 + L1ME4a LINE L1 5529 6049 -72 2233 92 0 16 chr9 86805930 86806236 -31056391 - AluSx SINE Alu -11 301 1 413 291 163 39 chr9 86806546 86806749 -31055878 - MIR SINE MIR -15 247 20 1781 159 3 10 chr9 86807070 86807384 -31055243 + AluJb SINE Alu 1 312 0 2616 204 41 60 chr9 86807596 86807786 -31054841 + MER82 DNA MER2_type 6 198 -455 2332 113 0 3 chr9 86807786 86808097 -31054530 + AluSx SINE Alu 1 310 -2 2616 204 41 60 chr9 86808097 86808291 -31054336 + MER82 DNA MER2_type 198 394 -259 2214 122 3 0 chr9 86808291 86808602 -31054025 + AluSx SINE Alu 1 312 0 2616 204 41 60 chr9 86808602 86808877 -31053750 + MER82 DNA MER2_type 394 653 0 2335 103 0 3 chr9 86808985 86809285 -31053342 - AluSg SINE Alu -11 299 1 908 95 0 0 chr9 86809286 86809402 -31053225 - AluSq/x SINE Alu -196 116 1 182 324 103 0 chr9 86810043 86810111 -31052516 - L2 LINE L2 -9 3304 3230 1014 167 41 66 chr9 86810140 86810174 -31052453 - MER33 DNA MER1_type -2266 319 286 1902 174 8 42 chr9 86810174 86810262 -31052365 + MER7A DNA MER2_type 4 93 -2945 2013 107 37 0 chr9 86810262 86810554 -31052073 - AluSx SINE Alu 0 302 1 1902 174 8 42 chr9 86810554 86810821 -31051806 + MER7A DNA MER2_type 93 346 0 1014 167 41 66 chr9 86810821 86810948 -31051679 - MER33 DNA MER1_type -2299 286 157 1768 143 16 49 chr9 86810948 86811111 -31051516 - AluJo SINE Alu -15 297 147 2109 128 7 0 chr9 86811111 86811407 -31051220 - AluSx SINE Alu -14 298 1 1768 143 16 49 chr9 86811407 86811550 -31051077 - AluJo SINE Alu -165 147 1 1014 167 41 66 chr9 86811550 86811705 -31050922 - MER33 DNA MER1_type -2428 157 10 255 208 0 0 chr9 86811673 86811721 -31050906 - MER3 DNA MER1_type -121 88 41 * 2495 67 0 7 chr9 86812131 86812431 -31050196 - AluY SINE Alu -13 298 1 895 203 33 0 chr9 86812439 86812621 -31050006 - MER5A DNA MER1_type -1 188 1 432 274 18 9 chr9 86812648 86812761 -31049866 - L2 LINE L2 -3 3310 3197 376 292 70 48 chr9 86812931 86813135 -31049492 - MIR SINE MIR -12 250 42 197 74 0 0 chr9 86813386 86813413 -31049214 - L2 LINE L2 -216 3056 3030 483 309 23 74 chr9 86813767 86813842 -31048785 + MIR SINE MIR 17 94 -168 2556 68 0 7 chr9 86813842 86814152 -31048475 + AluY SINE Alu 1 308 -3 483 309 23 74 chr9 86814152 86814332 -31048295 + MIR SINE MIR 94 259 -3 212 269 19 0 chr9 86814346 86814398 -31048229 + CT-rich Low_complexity Low_complexity 2 54 0 266 184 92 0 chr9 86815196 86815272 -31047355 - L1ME4a LINE L1 0 6121 6039 2311 95 0 43 chr9 86815329 86815655 -31046972 - AluSx SINE Alu 0 312 1 512 281 87 57 chr9 86815663 86815949 -31046678 - L1ME4a LINE L1 -747 5399 5123 2022 141 0 41 chr9 86815949 86816268 -31046359 - AluJo SINE Alu 0 312 7 512 281 87 57 chr9 86816268 86816433 -31046194 - L1ME4a LINE L1 -1023 5123 4965 339 78 0 0 chr9 86816433 86816484 -31046143 + (TG)n Simple_repeat Simple_repeat 2 52 0 512 281 87 57 chr9 86816484 86817077 -31045550 - L1ME4a LINE L1 -1181 4965 4416 1923 158 0 37 chr9 86817098 86817420 -31045207 - AluSx SINE Alu -2 310 1 626 272 36 76 chr9 86817568 86817790 -31044837 - L1ME4a LINE L1 -2828 3318 3089 2160 124 0 13 chr9 86817790 86818096 -31044531 - AluSx SINE Alu -10 302 1 626 272 36 76 chr9 86818096 86818177 -31044450 - L1ME4a LINE L1 -3057 3089 3006 219 36 0 0 chr9 86818177 86818205 -31044422 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 626 272 36 76 chr9 86818205 86818221 -31044406 - L1ME4a LINE L1 -3140 3006 2991 1715 185 0 7 chr9 86818221 86818507 -31044120 - AluJb SINE Alu -28 284 1 626 272 36 76 chr9 86818507 86818792 -31043835 - L1ME4a LINE L1 -3155 2991 2736 190 200 0 0 chr9 86818892 86818932 -31043695 - MIR SINE MIR -64 144 105 2196 115 10 0 chr9 86819232 86819542 -31043085 - AluSq SINE Alu 0 313 1 371 342 92 4 chr9 86819906 86820134 -31042493 + L2 LINE L2 2726 2973 -341 300 369 81 0 chr9 86820298 86820458 -31042169 + L2 LINE L2 328 500 -2814 347 266 146 35 chr9 86820536 86820735 -31041892 - MIR SINE MIR -36 226 6 290 250 16 89 chr9 86820752 86820876 -31041751 + MIR SINE MIR 63 177 -85 321 287 84 7 chr9 86821071 86821214 -31041413 - L2 LINE L2 -300 2972 2819 263 313 70 16 chr9 86822417 86822545 -31040082 - MIR SINE MIR -21 241 107 215 331 33 41 chr9 86822959 86823080 -31039547 + L2 LINE L2 3194 3313 0 633 293 82 5 chr9 86823141 86823349 -31039278 - MIR SINE MIR -32 230 7 270 211 254 53 chr9 86823721 86823835 -31038792 + L2 LINE L2 3136 3272 0 317 306 121 35 chr9 86823910 86824083 -31038544 + L2 LINE L2 3072 3259 -13 273 57 0 0 chr9 86824085 86824120 -31038507 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 32 0 0 0 chr9 86824648 86824680 -31037947 + AT_rich Low_complexity Low_complexity 1 32 0 190 277 46 62 chr9 86824773 86824838 -31037789 - L3 LINE CR1 -5 1572 1509 1938 122 0 4 chr9 86825116 86825395 -31037232 - AluSg SINE Alu -32 278 1 2146 163 55 0 chr9 86825395 86825799 -31036828 - L1MB3 LINE L1 -41 6142 5717 2188 128 7 0 chr9 86826078 86826374 -31036253 - AluSx SINE Alu -14 298 1 1012 125 0 0 chr9 86826374 86826510 -31036117 - AluSq/x SINE Alu -176 136 1 499 274 29 44 chr9 86827385 86827589 -31035038 + MIR SINE MIR 46 246 -16 751 129 0 0 chr9 86827592 86827693 -31034934 - AluSx SINE Alu -16 293 193 1181 116 0 0 chr9 86827694 86827840 -31034787 - AluSx SINE Alu -166 146 1 260 311 118 15 chr9 86828190 86828325 -31034302 + MIR3 SINE MIR 18 166 -42 2002 154 3 3 chr9 86828336 86828648 -31033979 - AluJb SINE Alu 0 312 1 198 103 0 0 chr9 86828653 86828682 -31033945 + (T)n Simple_repeat Simple_repeat 1 29 0 2484 69 10 0 chr9 86828832 86829136 -31033491 - AluSp SINE Alu -6 307 1 411 239 90 55 chr9 86829259 86829460 -31033167 + MIR SINE MIR 16 223 -39 180 0 0 0 chr9 86829633 86829653 -31032974 + (T)n Simple_repeat Simple_repeat 1 20 0 295 169 139 18 chr9 86829854 86829966 -31032661 + MIR SINE MIR 104 235 -27 376 341 29 7 chr9 86831213 86831351 -31031276 - MIR SINE MIR -102 160 20 330 325 71 56 chr9 86831393 86831590 -31031037 - MIR SINE MIR -60 202 3 1010 121 11 0 chr9 86831613 86831787 -31030840 + (TCCA)n Simple_repeat Simple_repeat 1 176 0 181 300 50 0 chr9 86831793 86831853 -31030774 - L2 LINE L2 -14 3299 3237 321 273 16 66 chr9 86832592 86832713 -31029914 - MER5A DNA MER1_type -58 131 17 532 229 201 0 chr9 86832732 86832876 -31029751 - MER5A DNA MER1_type -8 181 9 435 233 44 74 chr9 86833511 86833616 -31029011 + MIR SINE MIR 63 157 -105 999 148 108 40 chr9 86833616 86833792 -31028835 + MER5A DNA MER1_type 1 188 -1 435 233 44 74 chr9 86833792 86833867 -31028760 + MIR SINE MIR 157 233 -29 2505 84 3 0 chr9 86833907 86834216 -31028411 - AluSg SINE Alu 0 310 1 405 111 0 0 chr9 86834223 86834277 -31028350 - AluJb SINE Alu -20 290 237 * 785 156 0 0 chr9 86834275 86834397 -31028230 - AluJb SINE Alu -114 198 77 1363 161 0 50 chr9 86834521 86834763 -31027864 - AluJo SINE Alu -82 230 1 551 309 31 0 chr9 86835046 86835237 -31027390 - MIR SINE MIR -1 261 65 267 300 14 0 chr9 86836712 86836782 -31025845 - MIR3 SINE MIR -46 162 92 198 205 60 133 chr9 86837014 86837097 -31025530 - MIR SINE MIR -146 116 40 379 206 0 0 chr9 86837441 86837514 -31025113 + L2 LINE L2 3241 3313 0 1123 232 128 21 chr9 86838143 86838526 -31024101 - MLT1J LTR MaLR -78 433 10 360 313 17 8 chr9 86838581 86838707 -31023920 - MIR SINE MIR -62 146 41 248 288 38 25 chr9 86838935 86839015 -31023612 + L2 LINE L2 3188 3268 -4 421 283 94 19 chr9 86839228 86839387 -31023240 - MIR SINE MIR -33 229 59 420 71 0 0 chr9 86839599 86839655 -31022972 + (CA)n Simple_repeat Simple_repeat 2 57 0 401 286 61 61 chr9 86840213 86840475 -31022152 + L2 LINE L2 2838 3099 -214 2440 94 0 0 chr9 86840475 86840774 -31021853 - AluSg SINE Alu -11 299 1 834 210 93 56 chr9 86840884 86841047 -31021580 - MER58A DNA MER1_type -2197 223 49 2155 131 3 0 chr9 86841047 86841359 -31021268 + AluSq SINE Alu 1 313 0 834 210 93 56 chr9 86841359 86841409 -31021218 - MER58A DNA MER1_type -2371 49 2 434 256 26 50 chr9 86841414 86841582 -31021045 + MIR SINE MIR 23 186 -73 242 304 22 33 chr9 86841588 86841680 -31020947 + L2 LINE L2 3223 3313 0 * 318 298 8 25 chr9 86841658 86841779 -31020848 - L2 LINE L2 0 3272 3154 291 265 31 0 chr9 86841909 86842007 -31020620 - Charlie8 DNA MER1_type -2222 195 95 2160 124 0 25 chr9 86842111 86842425 -31020202 - AluSq SINE Alu -7 306 1 397 316 0 18 chr9 86842445 86842559 -31020068 - MIR SINE MIR -62 146 35 419 264 8 32 chr9 86842977 86843102 -31019525 + MIR SINE MIR 1 122 -140 296 331 143 8 chr9 86843685 86843818 -31018809 - L2 LINE L2 0 3272 3122 883 316 96 26 chr9 86844016 86844753 -31017874 + L2 LINE L2 1619 2407 -907 342 225 14 0 chr9 86844759 86844830 -31017797 - MER81 DNA DNA -42 72 1 250 304 165 59 chr9 86844835 86845082 -31017545 + L2 LINE L2 2762 2981 -291 2295 108 3 0 chr9 86845082 86845387 -31017240 - AluSx SINE Alu -6 306 1 250 304 165 59 chr9 86845387 86845579 -31017048 + L2 LINE L2 2981 3212 -60 1714 123 105 11 chr9 86846069 86846346 -31016281 + AluSx SINE Alu 1 303 -9 2166 110 3 0 chr9 86846477 86846768 -31015859 - AluSx SINE Alu -20 292 1 354 306 7 54 chr9 86846797 86846944 -31015683 + MIR3 SINE MIR 6 145 -63 369 340 68 6 chr9 86846955 86847117 -31015510 - MER5B DNA MER1_type 0 178 7 278 252 19 9 chr9 86847933 86848040 -31014587 + (TG)n Simple_repeat Simple_repeat 1 108 0 269 244 35 35 chr9 86848455 86848541 -31014086 + MIR SINE MIR 68 153 -109 497 256 88 74 chr9 86849368 86849583 -31013044 - MIR SINE MIR -12 250 33 2253 79 0 4 chr9 86849671 86849950 -31012677 + AluSg SINE Alu 1 278 -32 190 277 46 62 chr9 86850229 86850294 -31012333 + L3 LINE CR1 1509 1572 -5 32 0 0 0 chr9 86850387 86850419 -31012208 + AT_rich Low_complexity Low_complexity 1 32 0 273 57 0 0 chr9 86850947 86850982 -31011645 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 317 306 121 35 chr9 86850984 86851157 -31011470 - L2 LINE L2 -13 3259 3072 270 211 254 53 chr9 86851232 86851346 -31011281 - L2 LINE L2 0 3272 3136 633 293 82 5 chr9 86851718 86851926 -31010701 + MIR SINE MIR 7 230 -32 215 331 33 41 chr9 86851987 86852108 -31010519 - L2 LINE L2 0 3313 3194 263 313 70 16 chr9 86852522 86852650 -31009977 + MIR SINE MIR 107 241 -21 352 184 24 24 chr9 86853755 86853880 -31008747 + CT-rich Low_complexity Low_complexity 1 125 0 249 256 26 0 chr9 86853917 86853995 -31008632 + CT-rich Low_complexity Low_complexity 2 81 0 216 0 0 0 chr9 86854464 86854488 -31008139 + (CA)n Simple_repeat Simple_repeat 2 25 0 2192 116 3 0 chr9 86855211 86855505 -31007122 - AluSp SINE Alu -18 295 1 2200 112 0 14 chr9 86855663 86855984 -31006643 - AluSx SINE Alu 0 317 1 449 286 57 109 chr9 86855984 86856414 -31006213 + L2 LINE L2 2862 3271 -1 2148 117 10 7 chr9 86856425 86856724 -31005903 + AluSx SINE Alu 1 300 -12 240 86 0 0 chr9 86857095 86857130 -31005497 + (CA)n Simple_repeat Simple_repeat 2 36 0 456 259 36 9 chr9 86857145 86857257 -31005370 - MIR SINE MIR -88 174 60 2413 61 10 3 chr9 86857410 86857705 -31004922 - AluY SINE Alu -13 298 2 273 277 44 72 chr9 86857713 86857891 -31004736 - MIR SINE MIR -8 200 20 432 202 21 11 chr9 86858257 86858351 -31004276 + MIR SINE MIR 69 163 -99 476 132 53 0 chr9 86858558 86858634 -31003993 - MADE1 DNA Mariner 0 80 1 440 263 113 33 chr9 86858643 86858725 -31003902 - MIR SINE MIR -11 251 177 924 258 108 56 chr9 86858725 86858894 -31003733 + MLT1D LTR MaLR 1 160 -345 2581 54 0 0 chr9 86858894 86859190 -31003437 - AluY SINE Alu -15 296 1 924 258 108 56 chr9 86859190 86859397 -31003230 + MLT1D LTR MaLR 160 410 -95 1806 161 3 7 chr9 86859397 86859682 -31002945 - AluSx SINE Alu -28 284 1 924 258 108 56 chr9 86859682 86859784 -31002843 + MLT1D LTR MaLR 410 505 0 440 263 113 33 chr9 86859784 86859914 -31002713 - MIR SINE MIR -85 177 22 1029 177 0 6 chr9 86860010 86860191 -31002436 + AluJb SINE Alu 133 312 0 410 319 5 16 chr9 86860749 86860937 -31001690 + L3 LINE CR1 1168 1353 -224 452 193 15 111 chr9 86861011 86861146 -31001481 - FLAM_C SINE Alu -11 122 1 498 248 0 0 chr9 86861164 86861281 -31001346 + MIR SINE MIR 90 206 -56 2416 71 0 3 chr9 86861332 86861629 -31000998 - AluY SINE Alu -15 296 1 1972 109 11 4 chr9 86861634 86861901 -31000726 - AluSx SINE Alu -21 291 23 1603 170 7 24 chr9 86861934 86862223 -31000404 + AluJb SINE Alu 3 286 -26 1397 164 45 77 chr9 86862315 86862361 -31000266 - MER2 DNA MER2_type -20 325 279 1765 45 0 0 chr9 86862361 86862559 -31000068 - AluY SINE Alu -17 294 97 1397 164 45 77 chr9 86862559 86862848 -30999779 - MER2 DNA MER2_type -66 279 1 926 224 16 0 chr9 86863157 86863340 -30999287 - MER5A DNA MER1_type 0 189 4 258 164 48 29 chr9 86864261 86864365 -30998262 + (TA)n Simple_repeat Simple_repeat 2 107 0 269 244 43 43 chr9 86864387 86864502 -30998125 + L1MC/D LINE L1 5684 5798 -2010 2087 134 0 0 chr9 86864620 86864935 -30997692 + AluSx SINE Alu 1 315 0 224 337 0 0 chr9 86865883 86865966 -30996661 + MIR3 SINE MIR 118 200 -8 539 235 107 46 chr9 86866427 86866623 -30996004 + MER63A DNA MER1_type 1 208 -2 743 189 0 8 chr9 86867021 86867153 -30995474 - FLAM_C SINE Alu -2 131 1 2334 84 0 7 chr9 86867619 86867915 -30994712 + AluSc SINE Alu 1 294 -15 375 306 15 15 chr9 86868074 86868208 -30994419 + LTR33 LTR ERVL 381 514 -7 433 287 21 7 chr9 86868336 86868479 -30994148 - MIR SINE MIR -65 197 53 280 266 161 8 chr9 86869113 86869237 -30993390 + MIR SINE MIR 13 155 -107 2158 139 0 0 chr9 86869660 86869969 -30992658 - AluSx SINE Alu -3 309 1 2052 92 59 4 chr9 86870704 86870975 -30991652 + AluSc SINE Alu 1 286 -23 1117 236 92 71 chr9 86871567 86872100 -30990527 + MLT1H LTR MaLR 6 549 0 269 229 0 0 chr9 86872166 86872214 -30990413 + MER58 DNA MER1_type 1 48 -293 301 250 62 9 chr9 86872274 86872386 -30990241 - L1ME LINE L1 -482 5639 5522 533 315 138 31 chr9 86872563 86873042 -30989585 + L3 LINE CR1 733 1262 -315 25 0 0 0 chr9 86873066 86873091 -30989536 + AT_rich Low_complexity Low_complexity 1 25 0 2235 133 0 0 chr9 86873135 86873444 -30989183 + AluSg SINE Alu 1 309 -1 1636 131 11 47 chr9 86873570 86873845 -30988782 + THE1B LTR MaLR 1 265 -99 303 269 77 0 chr9 86873946 86874050 -30988577 - L1ME LINE L1 -466 5655 5544 2091 122 7 3 chr9 86874120 86874407 -30988220 - AluSx SINE Alu -24 288 1 302 171 8 162 chr9 86874407 86874440 -30988187 - L1ME LINE L1 -2414 5394 5358 2108 129 3 3 chr9 86874440 86874743 -30987884 - AluSx SINE Alu -9 303 1 302 171 8 162 chr9 86874743 86874826 -30987801 - L1ME LINE L1 -2450 5358 5296 581 280 69 0 chr9 86875004 86875222 -30987405 + L3 LINE CR1 1263 1495 -82 281 355 72 48 chr9 86875999 86876250 -30986377 - L2 LINE L2 -50 3222 2966 386 261 33 109 chr9 86876376 86876587 -30986040 + MIR SINE MIR 12 206 -56 2264 116 0 0 chr9 86876857 86877167 -30985460 - AluSx SINE Alu -2 310 1 1030 244 87 8 chr9 86877442 86877944 -30984683 - L1ME LINE L1 -566 5604 5051 664 137 0 8 chr9 86877944 86878061 -30984566 - L1PA14 LINE L1 0 6161 6046 754 132 0 0 chr9 86878063 86878169 -30984458 - U6 snRNA snRNA -1 106 1 567 289 113 66 chr9 86878298 86878783 -30983844 - L1MC4a LINE L1 -104 6017 5510 2366 96 0 31 chr9 86878799 86879122 -30983505 - AluSq SINE Alu 0 313 1 1146 173 14 41 chr9 86879194 86879414 -30983213 - MER20 DNA MER1_type -2 217 4 361 200 14 0 chr9 86880308 86880378 -30982249 + L2 LINE L2 3201 3271 -1 1522 146 0 9 chr9 86880465 86880698 -30981929 - AluSg/x SINE Alu -4 306 76 180 0 0 0 chr9 86881248 86881268 -30981359 + (TTA)n Simple_repeat Simple_repeat 1 20 0 2155 99 41 3 chr9 86881649 86881942 -30980685 + AluSg SINE Alu 1 304 -6 2059 129 3 0 chr9 86883397 86883692 -30978935 - AluSg SINE Alu -14 296 1 365 301 108 11 chr9 86883889 86884065 -30978562 - MIR SINE MIR -50 212 20 2469 86 0 10 chr9 86884139 86884452 -30978175 + AluSg SINE Alu 1 310 0 297 257 57 19 chr9 86885069 86885174 -30977453 - L1ME4a LINE L1 -31 6090 5982 324 0 0 0 chr9 86885181 86885217 -30977410 + (TG)n Simple_repeat Simple_repeat 2 37 0 1754 136 52 72 chr9 86885259 86885524 -30977103 + MER2 DNA MER2_type 8 277 -68 2871 19 0 0 chr9 86885534 86885845 -30976782 - AluY SINE Alu 0 311 1 2065 110 3 49 chr9 86885845 86886017 -30976610 - AluSx SINE Alu -9 303 149 2214 114 10 0 chr9 86886017 86886314 -30976313 - AluSq SINE Alu -12 301 2 2065 110 3 49 chr9 86886314 86886457 -30976170 - AluSx SINE Alu -163 149 1 1754 136 52 72 chr9 86886457 86886536 -30976091 + MER2 DNA MER2_type 277 345 0 391 289 53 13 chr9 86886547 86886699 -30975928 - L1ME4a LINE L1 -205 5916 5759 363 310 97 0 chr9 86886811 86886956 -30975671 + MIR SINE MIR 34 192 -70 273 252 0 113 chr9 86887449 86887512 -30975115 + MIR SINE MIR 107 153 -109 2316 100 0 3 chr9 86887512 86887813 -30974814 + AluSx SINE Alu 9 308 -4 273 252 0 113 chr9 86887813 86887864 -30974763 + MIR SINE MIR 153 208 -54 2254 78 14 3 chr9 86887968 86888284 -30974343 + AluSp SINE Alu 2 320 0 564 190 84 80 chr9 86888668 86888931 -30973696 + MER5C DNA MER1_type 61 324 0 286 195 142 8 chr9 86889021 86889154 -30973473 + MIR SINE MIR 42 189 -61 273 329 132 0 chr9 86889357 86889509 -30973118 - MIR SINE MIR -45 217 46 196 260 73 19 chr9 86890094 86890232 -30972395 + MIR SINE MIR 20 193 -69 549 246 145 43 chr9 86890291 86890311 -30972316 - MIR SINE MIR -34 228 211 4335 103 39 2 chr9 86890311 86890921 -30971706 - MER41B LTR ERV1 0 635 3 549 246 145 43 chr9 86890921 86891107 -30971520 - MIR SINE MIR -51 211 1 2062 125 44 0 chr9 86891274 86891569 -30971058 + AluSg SINE Alu 1 308 -2 285 98 0 0 chr9 86891937 86891978 -30970649 + (T)n Simple_repeat Simple_repeat 1 41 0 425 71 0 122 chr9 86892246 86892344 -30970283 - AluSq/x SINE Alu -209 103 18 238 254 141 35 chr9 86892616 86892758 -30969869 - L3 LINE CR1 -175 1402 1246 28 29 0 0 chr9 86893055 86893090 -30969537 + AT_rich Low_complexity Low_complexity 1 35 0 1784 166 0 26 chr9 86893101 86893408 -30969219 + AluSq SINE Alu 1 299 -14 727 160 0 0 chr9 86893411 86893517 -30969110 - AluJo/FLAM SINE Alu -195 117 12 2182 72 3 31 chr9 86893941 86894255 -30968372 - AluY SINE Alu 0 306 1 2126 139 0 3 chr9 86894343 86894652 -30967975 - AluSg SINE Alu -2 308 1 29 0 0 0 chr9 86894660 86894689 -30967938 + AT_rich Low_complexity Low_complexity 1 29 0 1559 192 11 17 chr9 86894689 86894976 -30967651 - AluJo SINE Alu -27 285 1 1268 175 9 22 chr9 86895017 86895245 -30967382 + AluJo SINE Alu 87 311 -1 1565 164 27 82 chr9 86895408 86895738 -30966889 - AluJo SINE Alu 0 312 1 2024 140 10 0 chr9 86896203 86896495 -30966132 - AluSx SINE Alu -17 295 1 398 265 74 64 chr9 86897630 86898053 -30964574 - L1MC/D LINE L1 -441 5680 5254 209 229 21 0 chr9 86898489 86898537 -30964090 + CT-rich Low_complexity Low_complexity 5 53 0 402 274 194 48 chr9 86898654 86899030 -30963597 + L2 LINE L2 2837 3267 -5 203 261 23 80 chr9 86899349 86899437 -30963190 - MER5B DNA MER1_type 0 178 96 232 219 9 97 chr9 86899824 86899938 -30962689 + MIR SINE MIR 109 212 -50 2373 94 10 0 chr9 86900054 86900361 -30962266 + AluSq SINE Alu 1 310 -3 194 322 28 42 chr9 86900791 86900934 -30961693 - MIR SINE MIR -55 207 67 2184 118 0 10 chr9 86901769 86902075 -30960552 - AluSx SINE Alu -9 303 1 4363 142 39 9 chr9 86902252 86903021 -30959606 - Tigger3b DNA MER2_type -439 792 1 1272 132 0 0 chr9 86903412 86903601 -30959026 - AluSg/x SINE Alu -1 309 121 230 309 0 0 chr9 86904714 86904782 -30957845 + MIR SINE MIR 80 147 -115 1032 206 34 0 chr9 86905274 86905478 -30957149 + MER58A DNA MER1_type 10 220 -4 289 307 163 34 chr9 86905608 86906074 -30956553 - L2 LINE L2 -787 2527 2002 438 318 51 38 chr9 86906193 86906418 -30956209 - MIR SINE MIR -3 259 30 512 301 161 0 chr9 86906594 86906793 -30955834 + MIR SINE MIR 17 247 -15 713 213 20 0 chr9 86906818 86906968 -30955659 - MIR SINE MIR -31 231 79 981 146 0 0 chr9 86907085 86907250 -30955377 + (TA)n Simple_repeat Simple_repeat 2 166 0 180 111 0 0 chr9 86907250 86907277 -30955350 + (CA)n Simple_repeat Simple_repeat 1 27 0 2064 115 0 7 chr9 86907277 86907555 -30955072 - AluSc SINE Alu -33 276 1 439 273 12 43 chr9 86908214 86908375 -30954252 + MIR SINE MIR 97 252 -10 258 268 72 0 chr9 86908377 86908474 -30954153 + L2 LINE L2 3208 3311 -2 591 281 69 15 chr9 86909219 86909422 -30953205 + MIR SINE MIR 20 233 -29 1037 203 29 14 chr9 86909495 86909702 -30952925 - MER58A DNA MER1_type -3 221 12 1389 251 82 43 chr9 86910301 86910546 -30952081 + MLT1G1 LTR MaLR 2 236 -354 1656 146 0 4 chr9 86910546 86910813 -30951814 - AluSx SINE Alu -12 300 35 1389 251 82 43 chr9 86910813 86911057 -30951570 + MLT1G1 LTR MaLR 236 502 -88 1516 199 92 0 chr9 86911058 86911320 -30951307 + MER21B LTR ERV1 208 493 -370 344 173 12 37 chr9 86911339 86911420 -30951207 + MLT1G1 LTR MaLR 462 540 -2 416 332 124 52 chr9 86911526 86912521 -30950106 - L2 LINE L2 -18 3254 2176 203 233 33 67 chr9 86912807 86912846 -30949781 + L2 LINE L2 3205 3243 -29 345 82 0 0 chr9 86912846 86912895 -30949732 + (TGAA)n Simple_repeat Simple_repeat 4 52 0 203 233 33 67 chr9 86912895 86912915 -30949712 + L2 LINE L2 3243 3262 -10 217 167 21 0 chr9 86914092 86914140 -30948487 + T-rich Low_complexity Low_complexity 2 50 0 528 337 20 15 chr9 86914798 86914997 -30947630 - MIR SINE MIR -56 206 7 190 343 30 0 chr9 86915108 86915175 -30947452 + L3b LINE CR1 1459 1527 -56 2126 259 62 12 chr9 86915247 86915935 -30946692 - L1MC4 LINE L1 -1 8041 7237 2653 205 58 9 chr9 86915948 86916316 -30946311 - L1MC4 LINE L1 -974 7068 6720 204 40 0 0 chr9 86916316 86916341 -30946286 + (CA)n Simple_repeat Simple_repeat 2 26 0 2653 205 58 9 chr9 86916341 86916529 -30946098 - L1MC4 LINE L1 -1322 6720 6480 1586 171 29 0 chr9 86916529 86916831 -30945796 - AluJb SINE Alu 0 310 1 721 211 0 0 chr9 86916992 86917125 -30945502 - FLAM_C SINE Alu 0 133 1 275 258 30 0 chr9 86917375 86917441 -30945186 + GA-rich Low_complexity Low_complexity 2 69 0 1747 171 0 10 chr9 86917580 86917890 -30944737 + AluJo SINE Alu 1 307 -5 246 315 19 28 chr9 86918028 86918136 -30944491 + LTR67 LTR ERVL 99 205 -352 318 184 53 53 chr9 86918391 86918467 -30944160 + LTR33A LTR ERVL 447 522 -1 208 312 89 45 chr9 86918751 86918908 -30943719 + L2 LINE L2 2751 2914 -400 2099 100 20 0 chr9 86919073 86919374 -30943253 - AluSx SINE Alu -5 307 1 26 0 0 0 chr9 86919533 86919559 -30943068 + AT_rich Low_complexity Low_complexity 1 26 0 183 300 0 0 chr9 86920014 86920064 -30942563 - L2 LINE L2 -8 3305 3256 507 328 85 17 chr9 86920259 86920494 -30942133 - MIR SINE MIR -6 256 6 203 293 12 98 chr9 86920877 86920959 -30941668 - L2 LINE L2 0 3272 3198 325 216 40 0 chr9 86920960 86921034 -30941593 + MIR SINE MIR 63 139 -123 423 0 0 0 chr9 86921135 86921182 -30941445 + (TCTA)n Simple_repeat Simple_repeat 3 49 0 372 200 27 0 chr9 86921317 86921392 -30941235 + AluJ/FRAM SINE Alu 221 297 -5 658 231 42 14 chr9 86921428 86921571 -30941056 - MIR SINE MIR -95 167 21 203 283 87 33 chr9 86921937 86922029 -30940598 + MIR SINE MIR 119 215 -47 260 259 172 17 chr9 86922804 86922920 -30939707 + MIR SINE MIR 119 252 -10 1064 196 17 43 chr9 86922946 86923176 -30939451 + MER58A DNA MER1_type 1 224 0 2140 76 3 45 chr9 86923331 86923645 -30938982 + AluY SINE Alu 1 301 -10 276 229 0 0 chr9 86923742 86923790 -30938837 + Charlie4 DNA MER1_type 1889 1936 -25 289 328 213 36 chr9 86923938 86924243 -30938384 - LTR16B LTR ERVL -2 462 104 2265 94 0 7 chr9 86924534 86924842 -30937785 - AluSx SINE Alu -6 306 1 237 305 148 8 chr9 86925715 86925843 -30936784 + MIR SINE MIR 116 261 -1 527 208 141 13 chr9 86926353 86926502 -30936125 - MIR SINE MIR -48 214 47 255 334 82 35 chr9 86926984 86927326 -30935301 + L2 LINE L2 2751 3113 -159 493 107 53 0 chr9 86927335 86927410 -30935217 - MADE1 DNA Mariner -1 79 1 424 92 0 53 chr9 86927974 86928050 -30934577 - L1MD2 LINE L1 -5 6354 6283 2239 92 7 0 chr9 86928683 86928988 -30933639 - AluSq SINE Alu -2 311 5 2175 94 0 22 chr9 86929304 86929438 -30933189 + AluSx SINE Alu 1 136 -176 1828 92 4 8 chr9 86929438 86929714 -30932913 + AluSc SINE Alu 36 309 0 2175 94 0 22 chr9 86929714 86929898 -30932729 + AluSx SINE Alu 136 312 0 263 290 130 0 chr9 86930111 86930211 -30932416 + MIR SINE MIR 74 186 -76 242 191 394 0 chr9 86930457 86930551 -30932076 + MIR SINE MIR 122 252 -10 289 279 99 18 chr9 86930654 86930765 -30931862 + MIR SINE MIR 28 147 -115 214 179 0 0 chr9 86931473 86931512 -30931115 + (TTCA)n Simple_repeat Simple_repeat 4 42 0 251 333 14 0 chr9 86931513 86931585 -30931042 - L2 LINE L2 -3 3269 3197 2272 101 0 0 chr9 86933450 86933757 -30928870 + AluSg SINE Alu 1 307 -3 917 266 8 28 chr9 86934100 86934187 -30928440 - MIR SINE MIR -4 258 171 1943 120 0 27 chr9 86934187 86934486 -30928141 + AluSg SINE Alu 1 291 -19 917 266 8 28 chr9 86934486 86934646 -30927981 - MIR SINE MIR -91 171 16 332 324 41 7 chr9 86934809 86934954 -30927673 + MIR SINE MIR 43 192 -70 2127 131 0 0 chr9 86934964 86935270 -30927357 - AluSx SINE Alu -6 306 1 257 218 218 0 chr9 86935909 86935987 -30926640 - Charlie8 DNA MER1_type -2248 169 75 2124 121 0 3 chr9 86936168 86936481 -30926146 - AluSx SINE Alu 0 312 1 675 146 7 15 chr9 86937183 86937320 -30925307 + CT-rich Low_complexity Low_complexity 1 136 0 2034 113 7 3 chr9 86937320 86937613 -30925014 - AluSc SINE Alu -15 294 1 274 336 128 8 chr9 86937778 86937903 -30924724 - L2 LINE L2 -8 3264 3125 580 283 74 2 chr9 86938166 86938425 -30924202 + MLT1J2 LTR MaLR 1 331 -119 1530 196 13 25 chr9 86938637 86938987 -30923640 - AluJb SINE Alu 0 346 1 5596 85 32 2 chr9 86939456 86940257 -30922370 + L1MA1 LINE L1 5478 6302 0 488 337 38 24 chr9 86940816 86941061 -30921566 - MIR SINE MIR -6 256 15 1107 174 14 9 chr9 86941067 86941286 -30921341 - AluJo SINE Alu -1 311 92 2143 84 0 27 chr9 86941474 86941795 -30920832 - AluY SINE Alu 0 311 1 2136 95 0 14 chr9 86941795 86942089 -30920538 - AluSg SINE Alu -18 292 3 236 204 20 31 chr9 86942098 86942196 -30920431 + CT-rich Low_complexity Low_complexity 4 100 0 889 140 14 7 chr9 86942662 86942805 -30919822 + AluJo SINE Alu 111 254 -58 924 139 17 40 chr9 86943121 86943294 -30919333 + FRAM SINE Alu 1 166 -10 248 300 0 0 chr9 86943568 86943618 -30919009 + MER45A DNA AcHobo 1 50 -128 1354 140 0 45 chr9 86943642 86943907 -30918720 - L1MA4 LINE L1 0 6300 6048 1983 134 0 0 chr9 86943907 86944191 -30918436 - AluSx SINE Alu -16 296 13 2365 132 2 20 chr9 86944224 86944237 -30918390 - L1MA4 LINE L1 -236 6064 6052 2109 100 0 0 chr9 86944237 86944518 -30918109 - AluSx SINE Alu -31 281 1 2365 132 2 20 chr9 86944518 86944897 -30917730 - L1MA4 LINE L1 -248 6052 5679 583 150 7 176 chr9 86944897 86944985 -30917642 + MER45A DNA AcHobo 52 106 -1475 1516 176 11 11 chr9 86944985 86945297 -30917330 + AluJo SINE Alu 3 314 0 583 150 7 176 chr9 86945297 86945360 -30917267 + MER45A DNA AcHobo 106 178 0 453 227 135 14 chr9 86945449 86945590 -30917037 + MIR SINE MIR 88 245 -17 582 312 46 1 chr9 86946261 86946457 -30916170 + MIR SINE MIR 3 205 -57 279 276 155 17 chr9 86946934 86947050 -30915577 - L2 LINE L2 -2 3311 3180 230 338 56 0 chr9 86947240 86947311 -30915316 + L2 LINE L2 3112 3186 -86 201 133 0 0 chr9 86947354 86947384 -30915243 + (CAAT)n Simple_repeat Simple_repeat 2 31 0 763 286 50 13 chr9 86947599 86947837 -30914790 - MIR SINE MIR 0 262 16 305 281 21 21 chr9 86949255 86949351 -30913276 - L1MC4 LINE L1 -1323 6719 6624 216 111 0 0 chr9 86949381 86949417 -30913210 + (CA)n Simple_repeat Simple_repeat 1 36 0 238 294 113 67 chr9 86950050 86950213 -30912414 + MIR SINE MIR 60 235 -27 1778 153 3 7 chr9 86950213 86950514 -30912113 + AluJb SINE Alu 1 300 -12 238 294 113 67 chr9 86950514 86950544 -30912083 + MIR SINE MIR 235 262 0 344 317 126 72 chr9 86950641 86951430 -30911197 + L2 LINE L2 2023 2853 -461 1664 178 13 0 chr9 86952109 86952407 -30910220 + AluJo SINE Alu 11 312 0 213 39 0 0 chr9 86952415 86952441 -30910186 + (GGAA)n Simple_repeat Simple_repeat 3 28 0 235 304 130 17 chr9 86953742 86953857 -30908770 + MIR3 SINE MIR 10 137 -71 1045 196 18 23 chr9 86953867 86954087 -30908540 + MER20 DNA MER1_type 1 219 0 211 292 0 0 chr9 86954320 86954368 -30908259 + polypyrimidine Low_complexity Low_complexity 4 51 0 463 270 120 66 chr9 86954368 86954627 -30908000 - L2 LINE L2 -14 3299 3027 273 341 0 0 chr9 86955389 86955474 -30907153 + L2 LINE L2 3225 3309 -4 1488 130 0 13 chr9 86955897 86956135 -30906492 - AluSg/x SINE Alu -7 303 69 206 291 47 47 chr9 86956135 86956262 -30906365 - L3 LINE CR1 -28 1549 1423 966 260 29 61 chr9 86956274 86956620 -30906007 + MER102b DNA MER1_type 1 335 -6 530 259 89 62 chr9 86956632 86956856 -30905771 + MIR SINE MIR 33 262 0 384 297 95 8 chr9 86957198 86957368 -30905259 + MIR SINE MIR 3 188 -62 225 128 85 21 chr9 86957368 86957415 -30905212 + LTR58 LTR ERV1 615 664 -15 191 300 73 18 chr9 86957464 86957574 -30905053 - L2 LINE L2 -11 3261 3146 238 197 40 40 chr9 86958306 86958382 -30904245 - MIR SINE MIR -1 261 186 803 129 0 0 chr9 86958398 86958522 -30904105 - AluSc SINE Alu -52 257 134 335 255 85 0 chr9 86958522 86958616 -30904011 - MIR SINE MIR -43 219 118 208 164 30 15 chr9 86959280 86959347 -30903280 + (TGAA)n Simple_repeat Simple_repeat 4 71 0 2457 137 32 46 chr9 86959897 86960334 -30902293 + Tigger2a DNA MER2_type 1 431 -3 1866 125 29 88 chr9 86960357 86960770 -30901857 + MER4A LTR ERV1 2 236 -229 639 143 143 14 chr9 86960803 86960875 -30901752 + MER4C LTR ERV1 300 361 -104 2151 107 0 0 chr9 86960875 86961173 -30901454 - AluSx SINE Alu -14 298 1 639 143 143 14 chr9 86961173 86961247 -30901380 + MER4C LTR ERV1 361 465 0 202 233 0 0 chr9 86961592 86961635 -30900992 - L2 LINE L2 -203 3069 3027 273 225 75 25 chr9 86961939 86962019 -30900608 - HERVFH19I LTR ERV1 -1840 5879 5796 426 249 59 41 chr9 86962090 86962493 -30900134 - MLT1H LTR MaLR 0 549 52 288 359 117 16 chr9 86962540 86962788 -30899839 - L2 LINE L2 -463 2851 2579 246 288 99 45 chr9 86962787 86962898 -30899729 + L2 LINE L2 3153 3269 -3 * 198 273 0 39 chr9 86963125 86963202 -30899425 + MIR SINE MIR 77 150 -58 254 320 50 20 chr9 86964749 86964775 -30897852 - MIR SINE MIR -147 115 91 362 46 62 0 chr9 86964775 86964840 -30897787 + (CA)n Simple_repeat Simple_repeat 2 70 0 254 320 50 20 chr9 86964840 86964913 -30897714 - MIR SINE MIR -171 91 13 219 36 0 0 chr9 86965528 86965556 -30897071 + (TG)n Simple_repeat Simple_repeat 1 28 0 220 277 22 71 chr9 86965583 86965767 -30896860 + GA-rich Low_complexity Low_complexity 1 175 0 412 295 53 53 chr9 86965768 86965975 -30896652 - MIR SINE MIR -5 257 51 450 231 51 0 chr9 86966960 86967077 -30895550 - L1ME3A LINE L1 -9 6161 6039 2601 199 105 151 chr9 86967079 86967641 -30894986 + MLT1H1 LTR MaLR 3 542 -4 1241 232 78 33 chr9 86967648 86968071 -30894556 - L1ME3A LINE L1 -130 6040 5599 351 261 23 23 chr9 86968071 86968159 -30894468 - L1MC4 LINE L1 -1341 6701 6614 296 70 0 0 chr9 86968207 86968250 -30894377 + MADE1 DNA Mariner 1 43 -37 267 31 0 0 chr9 86968271 86968303 -30894324 + (TA)n Simple_repeat Simple_repeat 1 32 0 * 273 57 0 0 chr9 86968302 86968337 -30894290 + (CA)n Simple_repeat Simple_repeat 2 36 0 305 321 0 9 chr9 86968392 86968418 -30894209 + (TA)n Simple_repeat Simple_repeat 1 26 -82 2918 82 0 11 chr9 86968418 86968796 -30893831 + THE1C LTR MaLR 1 374 -1 305 321 0 9 chr9 86968796 86968878 -30893749 + (TA)n Simple_repeat Simple_repeat 26 108 0 186 133 0 0 chr9 86968899 86968929 -30893698 + (CATATA)n Simple_repeat Simple_repeat 1 30 0 207 0 0 0 chr9 86968948 86968971 -30893656 + (CA)n Simple_repeat Simple_repeat 2 24 0 321 294 167 8 chr9 86969014 86969140 -30893487 - L1ME3A LINE L1 -549 5621 5476 2204 98 7 0 chr9 86969141 86969447 -30893180 - AluSp SINE Alu -1 312 5 1418 170 145 0 chr9 86970115 86970398 -30892229 + MLT2C1 LTR ERVL 3 326 -71 239 161 71 0 chr9 86970447 86970503 -30892124 - LTR66 LTR ERVL -171 439 380 204 135 0 0 chr9 86970506 86970543 -30892084 + (TAGA)n Simple_repeat Simple_repeat 3 39 0 274 143 0 0 chr9 86970543 86970585 -30892042 + MLT2C1 LTR ERVL 356 397 0 2031 123 3 0 chr9 86971093 86971386 -30891241 - AluSx SINE Alu -18 294 1 195 295 77 13 chr9 86971528 86971606 -30891021 + MIR SINE MIR 45 127 -81 425 293 85 62 chr9 86972065 86972580 -30890047 + L2 LINE L2 2613 3134 -138 225 0 0 0 chr9 86972580 86972605 -30890022 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 425 293 85 62 chr9 86972605 86972708 -30889919 + L2 LINE L2 3134 3233 -39 448 159 45 23 chr9 86973023 86973111 -30889516 + MLT1I LTR MaLR 318 407 -2 322 288 64 16 chr9 86973617 86973742 -30888885 - MIR SINE MIR -79 183 53 417 347 107 37 chr9 86973805 86974131 -30888496 - L2 LINE L2 -9 3263 2915 185 283 178 33 chr9 86974563 86974715 -30887912 - MIR SINE MIR -43 219 46 1163 257 69 42 chr9 86976287 86976622 -30886005 + MLT1E LTR MaLR 125 468 -125 391 42 0 0 chr9 86976622 86976670 -30885957 - L1PB1 LINE L1 -238 5913 5866 735 153 81 0 chr9 86976670 86976794 -30885833 + MLT1E LTR MaLR 521 654 0 2035 144 7 0 chr9 86977002 86977308 -30885319 - AluSx SINE Alu -4 308 1 189 295 51 0 chr9 86977378 86977456 -30885171 + MIR SINE MIR 69 150 -112 676 143 60 30 chr9 86977471 86977604 -30885023 + L1PA15 LINE L1 6008 6144 -21 27 49 0 0 chr9 86977605 86977646 -30884981 + AT_rich Low_complexity Low_complexity 1 41 0 2017 158 3 0 chr9 86977648 86977984 -30884643 - L1PB1 LINE L1 -1 6150 5814 256 146 0 0 chr9 86978020 86978068 -30884559 + L1M4 LINE L1 5782 5829 -345 6289 164 3 7 chr9 86978072 86979803 -30882824 - L1PB1 LINE L1 -368 5783 4060 298 288 20 0 chr9 86979810 86979963 -30882664 + L1M4 LINE L1 2368 2523 -3623 521 298 132 1 chr9 86980088 86980388 -30882239 - LTR16C LTR ERVL -43 448 85 202 174 186 105 chr9 86980453 86980539 -30882088 + MIR SINE MIR 140 232 -30 192 40 0 0 chr9 86980543 86980568 -30882059 + (T)n Simple_repeat Simple_repeat 1 25 0 1730 179 0 6 chr9 86980578 86980890 -30881737 + AluJb SINE Alu 1 310 -2 349 331 63 0 chr9 86981237 86981364 -30881263 + MIR SINE MIR 70 204 -58 2815 210 19 45 chr9 86981385 86981840 -30880787 + MER82 DNA MER2_type 23 457 -196 2095 126 3 0 chr9 86981840 86982150 -30880477 + AluSx SINE Alu 1 311 -1 2815 210 19 45 chr9 86982150 86982342 -30880285 + MER82 DNA MER2_type 457 653 0 323 309 54 0 chr9 86983000 86983149 -30879478 - MIR SINE MIR -6 256 100 23 0 0 0 chr9 86983295 86983318 -30879309 + AT_rich Low_complexity Low_complexity 1 23 0 569 329 37 8 chr9 86983322 86983568 -30879059 - MIR SINE MIR -3 259 7 267 309 250 12 chr9 86983956 86984124 -30878503 - MIR SINE MIR -8 254 47 482 242 32 16 chr9 86984694 86984818 -30877809 + MIR SINE MIR 28 153 -109 899 260 20 31 chr9 86985249 86985503 -30877124 + MIR SINE MIR 12 262 0 302 340 69 0 chr9 86985894 86986038 -30876589 - L2 LINE L2 0 3272 3119 637 307 15 34 chr9 86986268 86986473 -30876154 - MIR SINE MIR -15 247 47 2025 131 139 16 chr9 86986485 86986866 -30875761 - MSTA LTR MaLR 0 428 1 9668 136 8 47 chr9 86986866 86988508 -30874119 - MSTA-int LTR MaLR 0 1580 3 2164 132 134 8 chr9 86988510 86988890 -30873737 - MSTA LTR MaLR 0 428 1 23 0 0 0 chr9 86989255 86989278 -30873349 + AT_rich Low_complexity Low_complexity 1 23 0 1067 173 0 11 chr9 86989465 86989644 -30872983 - AluJb SINE Alu -24 288 112 690 87 0 0 chr9 86989676 86989779 -30872848 + (TCTCCC)n Simple_repeat Simple_repeat 1 103 0 5346 60 34 55 chr9 86989779 86990748 -30871879 + SVA Other Other 57 868 -592 1563 95 11 75 chr9 86990761 86991225 -30871402 + SVA Other Other 433 866 -520 6458 69 4 46 chr9 86991239 86992708 -30869919 + SVA Other Other 433 1386 0 648 197 8 8 chr9 86992708 86992830 -30869797 - AluJb SINE Alu -189 123 2 1731 165 10 14 chr9 86993585 86993882 -30868745 + AluJo SINE Alu 1 296 -16 766 163 74 22 chr9 86993883 86994018 -30868609 + FLAM_C SINE Alu 2 143 0 187 304 76 0 chr9 86994606 86994685 -30867942 - MIR3 SINE MIR -14 194 110 462 262 96 66 chr9 86994737 86995207 -30867420 + L1ME LINE L1 5317 5678 -443 410 326 39 11 chr9 86995322 86995503 -30867124 + MIR SINE MIR 20 205 -57 988 237 71 34 chr9 86995911 86996320 -30866307 + MER113 DNA MER1_type? 95 518 -3 501 300 7 27 chr9 86996342 86996492 -30866135 - MIR3 SINE MIR -55 153 7 234 22 0 65 chr9 86996630 86996676 -30865951 + (CAAAAA)n Simple_repeat Simple_repeat 1 43 0 260 346 39 58 chr9 86996861 86997069 -30865558 - MIR SINE MIR -18 244 41 468 297 25 109 chr9 86997357 86997640 -30864987 + L2 LINE L2 3014 3272 0 1171 211 18 0 chr9 86997716 86997943 -30864684 + Charlie1 DNA MER1_type 8 238 -2523 795 136 53 0 chr9 86997931 86998063 -30864564 + Charlie1 DNA MER1_type 2623 2761 0 * 344 298 145 0 chr9 86998072 86998203 -30864424 + MIR SINE MIR 22 171 -91 1748 116 7 18 chr9 86998205 86998481 -30864146 + AluSx SINE Alu 3 275 -37 248 236 0 56 chr9 86998543 86998615 -30864012 + MIR SINE MIR 167 234 -28 200 250 54 0 chr9 86998639 86998695 -30863932 - MIR SINE MIR -141 121 63 285 202 67 29 chr9 86999297 86999401 -30863226 - MIR3 SINE MIR -20 188 81 35 63 0 0 chr9 86999542 86999605 -30863022 + AT_rich Low_complexity Low_complexity 1 63 0 478 204 121 15 chr9 86999705 86999837 -30862790 + MIR SINE MIR 50 195 -67 1795 155 3 16 chr9 86999838 87000154 -30862473 + AluSx SINE Alu 1 312 0 252 266 85 21 chr9 87000267 87000361 -30862266 - MIR SINE MIR -147 115 16 1394 159 191 29 chr9 87000408 87000722 -30861905 + MLT1A1 LTR MaLR 1 365 0 647 217 0 23 chr9 87001324 87001453 -30861174 - FLAM_A SINE Alu -7 126 1 1743 134 47 10 chr9 87001482 87001781 -30860846 - AluY SINE Alu -1 310 1 1670 207 96 55 chr9 87002139 87002325 -30860302 - L1ME3A LINE L1 -17 6153 5976 2544 148 29 7 chr9 87002325 87002738 -30859889 + MSTB LTR MaLR 5 426 0 1670 207 96 55 chr9 87002738 87002833 -30859794 - L1ME3A LINE L1 -194 5976 5886 2430 109 11 3 chr9 87002833 87003182 -30859445 + THE1A LTR MaLR 1 352 -3 1670 207 96 55 chr9 87003182 87003410 -30859217 - L1ME3A LINE L1 -284 5886 5622 471 302 68 24 chr9 87003863 87004111 -30858516 + LTR33 LTR ERVL 19 277 -244 248 316 76 0 chr9 87004268 87004347 -30858280 + L2 LINE L2 3188 3272 0 552 256 189 18 chr9 87004447 87004728 -30857899 - MER102a DNA MER1_type 0 330 2 344 285 43 29 chr9 87005490 87005666 -30856961 + MIR SINE MIR 22 207 -55 778 345 57 9 chr9 87005967 87006425 -30856202 - L1MC4a LINE L1 -1956 5852 5373 395 304 29 14 chr9 87006480 87006618 -30856009 + MIR3 SINE MIR 6 145 -63 673 149 9 0 chr9 87006626 87006733 -30855894 + MLT1A2 LTR MaLR 1 108 -266 897 213 0 0 chr9 87006741 87006901 -30855726 + MLT1A2 LTR MaLR 215 374 0 950 261 168 6 chr9 87007005 87007327 -30855300 - MLT2B3 LTR ERVL -180 374 1 2152 89 3 3 chr9 87007489 87007780 -30854847 + AluSc SINE Alu 2 292 -17 598 272 86 80 chr9 87008266 87008428 -30854199 + MER5B DNA MER1_type 1 152 -26 2716 222 123 57 chr9 87009032 87009757 -30852870 - MER45B DNA AcHobo -267 773 1 727 287 136 60 chr9 87009773 87010050 -30852577 + L1ME4a LINE L1 5527 5781 -340 2287 110 24 42 chr9 87010050 87010432 -30852195 + THE1C LTR MaLR 1 375 0 727 287 136 60 chr9 87010432 87010508 -30852119 + L1ME4a LINE L1 5781 5850 -271 28 61 0 0 chr9 87010508 87010557 -30852070 + AT_rich Low_complexity Low_complexity 1 49 0 727 287 136 60 chr9 87010557 87010690 -30851937 + L1ME4a LINE L1 5850 6103 -18 2492 88 41 0 chr9 87010947 87011288 -30851339 - THE1A LTR MaLR 0 355 1 432 158 95 0 chr9 87011443 87011538 -30851089 - L1MB2 LINE L1 0 6171 6068 884 138 0 48 chr9 87011554 87011696 -30850931 - L1MA10 LINE L1 0 6334 6200 2843 65 3 0 chr9 87011696 87012050 -30850577 - THE1A LTR MaLR 0 355 1 884 138 0 48 chr9 87012050 87012074 -30850553 - L1MA10 LINE L1 -134 6200 6176 351 0 0 0 chr9 87012087 87012126 -30850501 + (T)n Simple_repeat Simple_repeat 1 39 0 647 137 29 0 chr9 87012128 87012230 -30850397 - U6 snRNA snRNA -1 106 2 738 131 58 7 chr9 87012244 87012381 -30850246 - L1MB1 LINE L1 -6 6162 6019 2052 147 3 25 chr9 87012381 87012532 -30850095 + L1MB1 LINE L1 5568 5721 -447 1449 225 51 38 chr9 87012532 87012923 -30849704 - MSTD LTR MaLR 0 396 1 2052 147 3 25 chr9 87012923 87013131 -30849496 + L1MB1 LINE L1 5721 5919 -249 2466 64 0 3 chr9 87013629 87013924 -30848703 - AluY SINE Alu -17 294 1 1350 151 68 130 chr9 87014547 87014932 -30847695 - MER46B DNA MER2_type 0 236 1 191 277 13 119 chr9 87014984 87015025 -30847602 + MER5A DNA MER1_type 37 81 -108 2390 96 0 0 chr9 87015025 87015328 -30847299 + AluSx SINE Alu 1 303 -9 191 277 13 119 chr9 87015328 87015445 -30847182 + MER5A DNA MER1_type 81 178 -11 271 298 26 18 chr9 87015494 87015608 -30847019 + MIR SINE MIR 77 191 -71 603 288 49 0 chr9 87015974 87016179 -30846448 - MIR SINE MIR -1 261 47 576 168 11 0 chr9 87016187 87016282 -30846345 + AluJ/FLAM SINE Alu 5 100 -212 288 276 98 89 chr9 87016434 87016593 -30846034 + MER112 DNA MER1_type 1 164 -96 2384 103 0 6 chr9 87016593 87016904 -30845723 - AluSc SINE Alu 0 309 1 288 276 98 89 chr9 87016904 87016990 -30845637 + MER112 DNA MER1_type 164 248 -12 330 279 144 15 chr9 87017183 87017384 -30845243 + MIR SINE MIR 20 246 -16 186 254 90 0 chr9 87017636 87017703 -30844924 + MIR SINE MIR 123 195 -67 265 241 0 0 chr9 87017900 87017958 -30844669 + L2 LINE L2 3256 3313 0 253 240 25 107 chr9 87018010 87018131 -30844496 - Charlie8 DNA MER1_type 0 2417 220 1254 209 152 53 chr9 87018401 87018847 -30843780 + MLT1F1 LTR MaLR 3 488 -79 1878 157 0 20 chr9 87019342 87019641 -30842986 + AluJb SINE Alu 6 298 -14 238 292 77 30 chr9 87020181 87020349 -30842278 - L2 LINE L2 -914 2400 2225 417 218 35 2 chr9 87021626 87021742 -30840885 + MLT1J2 LTR MaLR 36 155 -292 452 241 145 60 chr9 87021742 87021908 -30840719 - MER5A DNA MER1_type -1 188 9 412 292 31 25 chr9 87022033 87022194 -30840433 + MLT1J2 LTR MaLR 282 443 -7 2272 74 0 0 chr9 87022869 87023168 -30839459 + L1PA8 LINE L1 5874 6172 0 207 200 0 0 chr9 87023708 87023743 -30838884 + T-rich Low_complexity Low_complexity 1 35 0 966 122 11 17 chr9 87023744 87023925 -30838702 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 213 39 0 0 chr9 87023931 87023957 -30838670 + (TTCC)n Simple_repeat Simple_repeat 2 27 0 297 191 0 0 chr9 87023958 87024005 -30838622 - Alu SINE Alu -11 291 245 265 333 63 11 chr9 87024045 87024219 -30838408 + MIR SINE MIR 52 234 -28 357 301 51 34 chr9 87024263 87024439 -30838188 - MLT1J2 LTR MaLR 0 450 272 256 247 101 22 chr9 87024488 87024577 -30838050 - MLT1J LTR MaLR -313 198 103 283 237 93 106 chr9 87025257 87025490 -30837137 + MIR SINE MIR 3 233 -29 271 221 91 0 chr9 87025612 87025689 -30836938 - MIR SINE MIR -72 190 107 186 43 0 0 chr9 87025967 87025990 -30836637 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1752 193 3 10 chr9 87025992 87026297 -30836330 - 7SLRNA srpRNA srpRNA -17 303 1 524 289 138 6 chr9 87026331 87026490 -30836137 + MER5A DNA MER1_type 9 188 -1 2462 95 3 0 chr9 87026501 87026806 -30835821 - AluSx SINE Alu -6 306 1 4838 170 42 25 chr9 87026880 87027273 -30835354 - MER21B LTR ERV1 0 863 478 2427 100 33 25 chr9 87027273 87027634 -30834993 - THE1B LTR MaLR 0 364 1 4838 170 42 25 chr9 87027634 87028088 -30834539 - MER21B LTR ERV1 -385 478 1 1604 110 18 4 chr9 87028170 87028397 -30834230 + MER30 DNA MER1_type 1 230 0 384 272 68 0 chr9 87028962 87029109 -30833518 - MIR SINE MIR -65 197 41 221 361 16 16 chr9 87029728 87029850 -30832777 + MIR SINE MIR 16 137 -71 668 323 146 26 chr9 87030008 87030398 -30832229 - MLT1K LTR MaLR -27 561 125 1633 110 0 0 chr9 87031791 87032000 -30830627 + AluSx SINE Alu 1 209 -103 6341 115 267 36 chr9 87032000 87033378 -30829249 + pTR5 LTR ERV1 743 2438 0 631 124 21 0 chr9 87033381 87033478 -30829149 + AluSx SINE Alu 204 302 -8 238 268 16 8 chr9 87034980 87035103 -30827524 + GA-rich Low_complexity Low_complexity 2 125 0 205 265 103 15 chr9 87035103 87035171 -30827456 - MIR3 SINE MIR -24 184 111 201 167 0 0 chr9 87035241 87035277 -30827350 + T-rich Low_complexity Low_complexity 1 36 0 376 309 284 0 chr9 87035905 87036099 -30826528 - MIR SINE MIR -11 251 3 1902 150 10 10 chr9 87036282 87036589 -30826038 + AluJo SINE Alu 1 307 -5 544 309 33 29 chr9 87037361 87037604 -30825023 - MLT1J LTR MaLR -4 507 264 632 198 0 17 chr9 87038308 87038424 -30824203 - MER94 DNA DNA -17 117 4 33 0 0 0 chr9 87038978 87039011 -30823616 + AT_rich Low_complexity Low_complexity 1 33 0 232 127 36 0 chr9 87039576 87039631 -30822996 + (TA)n Simple_repeat Simple_repeat 2 58 0 266 250 105 0 chr9 87039754 87039830 -30822797 + MIR SINE MIR 117 200 -62 1887 154 3 7 chr9 87040042 87040334 -30822293 + AluJb SINE Alu 1 291 -21 396 167 0 0 chr9 87040856 87040928 -30821699 + CT-rich Low_complexity Low_complexity 2 73 0 2290 69 0 0 chr9 87040928 87041203 -30821424 - AluY SINE Alu -36 275 1 863 76 0 17 chr9 87041534 87041652 -30820975 + AluY SINE Alu 177 292 -19 234 152 0 0 chr9 87041660 87041706 -30820921 + L2 LINE L2 3268 3313 0 252 336 63 28 chr9 87041901 87042044 -30820583 - MIR SINE MIR -112 150 3 355 315 64 20 chr9 87042298 87042501 -30820126 - MIR SINE MIR -11 251 40 5531 135 19 22 chr9 87042524 87042642 -30819985 - L1MA4 LINE L1 0 6300 6183 1732 174 24 7 chr9 87042642 87042935 -30819692 - AluJb SINE Alu -8 304 7 5531 135 19 22 chr9 87042935 87043765 -30818862 - L1MA4 LINE L1 -117 6183 5355 208 222 0 0 chr9 87043765 87043801 -30818826 + polypyrimidine Low_complexity Low_complexity 3 38 0 669 198 56 0 chr9 87043811 87043937 -30818690 - FLAM_A SINE Alu 0 133 1 7910 171 29 3 chr9 87043939 87045415 -30817212 - L1MA4 LINE L1 -775 5371 3859 231 146 0 0 chr9 87045653 87045694 -30816933 - L2 LINE L2 -1 3312 3272 1570 197 33 7 chr9 87045732 87046036 -30816591 + AluJb SINE Alu 1 312 0 731 158 8 0 chr9 87046098 87046225 -30816402 - L1MB7 LINE L1 -10 6174 6047 525 302 56 9 chr9 87046263 87046478 -30816149 - L2 LINE L2 -208 3105 2881 1718 184 3 10 chr9 87046481 87046786 -30815841 + AluJb SINE Alu 1 303 -9 300 258 80 56 chr9 87049436 87049617 -30813010 - MIR SINE MIR -56 206 16 2196 118 0 0 chr9 87049777 87050064 -30812563 + AluSx SINE Alu 1 287 -25 2370 112 0 3 chr9 87051471 87051783 -30810844 + AluSq SINE Alu 1 311 -2 1915 235 12 34 chr9 87051888 87052391 -30810236 + L1ME2 LINE L1 5641 6132 -32 45 0 0 0 chr9 87052426 87052471 -30810156 + AT_rich Low_complexity Low_complexity 1 45 0 1928 121 4 4 chr9 87052474 87052739 -30809888 - AluSq SINE Alu -48 265 1 1072 161 0 0 chr9 87052742 87052903 -30809724 - AluJb SINE Alu -18 294 134 213 296 48 32 chr9 87053272 87053397 -30809230 - L2 LINE L2 -1018 2296 2170 2006 126 37 0 chr9 87053468 87053762 -30808865 + AluSx SINE Alu 1 305 -7 460 245 84 14 chr9 87054097 87054240 -30808387 + MIR SINE MIR 100 252 -10 273 138 52 0 chr9 87054379 87054437 -30808190 - L1MD3 LINE L1 -13 7982 7922 195 191 85 0 chr9 87054616 87054663 -30807964 - L2 LINE L2 -25 3247 3197 185 279 0 0 chr9 87054687 87054730 -30807897 - L2 LINE L2 -37 3276 3234 2286 108 0 3 chr9 87054953 87055249 -30807378 + AluSg SINE Alu 1 295 -15 231 284 185 0 chr9 87055914 87055995 -30806632 + L2 LINE L2 3154 3249 -23 2331 118 46 0 chr9 87056906 87057254 -30805373 + THE1B LTR MaLR 1 364 0 309 244 76 25 chr9 87057261 87057349 -30805278 + LTR37B LTR ERV1 313 410 -58 192 40 0 0 chr9 87057349 87057374 -30805253 + (TG)n Simple_repeat Simple_repeat 2 26 0 309 244 76 25 chr9 87057374 87057404 -30805223 + LTR37B LTR ERV1 410 437 -31 654 206 0 37 chr9 87057404 87057540 -30805087 - FLAM_C SINE Alu -5 138 8 209 309 36 0 chr9 87057881 87057936 -30804691 + L2 LINE L2 3153 3209 -63 243 125 0 0 chr9 87057971 87058011 -30804616 + (TGAA)n Simple_repeat Simple_repeat 2 41 0 795 152 0 43 chr9 87058757 87058895 -30803732 - FLAM_C SINE Alu 0 143 12 1634 208 50 5 chr9 87058906 87059286 -30803341 - LTR37A LTR ERV1 -26 400 4 1873 173 3 3 chr9 87059461 87059773 -30802854 - AluJb SINE Alu 0 312 1 291 257 0 0 chr9 87059930 87060000 -30802627 + MIR SINE MIR 65 134 -128 1080 141 0 6 chr9 87060001 87060164 -30802463 - FAM SINE Alu 0 49 1 771 163 0 35 chr9 87060206 87060347 -30802280 + FLAM_C SINE Alu 2 137 -6 300 111 0 0 chr9 87060347 87060392 -30802235 + (CAATA)n Simple_repeat Simple_repeat 5 49 0 187 250 38 25 chr9 87060534 87060614 -30802013 - L2 LINE L2 -656 2658 2578 377 261 51 36 chr9 87060943 87061081 -30801546 - MIR SINE MIR -27 235 96 1739 107 67 63 chr9 87061440 87061740 -30800887 - AluSc SINE Alu -8 301 1 830 137 0 50 chr9 87062116 87062255 -30800372 + FLAM_C SINE Alu 2 133 0 192 135 0 0 chr9 87063153 87063190 -30799437 + (A)n Simple_repeat Simple_repeat 1 37 0 2386 96 0 0 chr9 87063516 87063819 -30798808 + AluSx SINE Alu 1 303 -9 248 180 0 0 chr9 87063857 87063907 -30798720 - Alu SINE Alu -3 297 248 1397 122 111 11 chr9 87064441 87064703 -30797924 - AluSx SINE Alu -24 288 1 1169 118 118 33 chr9 87065058 87065270 -30797357 + MER30 DNA MER1_type 1 230 0 232 342 58 0 chr9 87066056 87066176 -30796451 + L2 LINE L2 3144 3270 -2 194 333 48 0 chr9 87066345 87066429 -30796198 - MIR3 SINE MIR -23 185 98 313 263 12 12 chr9 87066511 87066591 -30796036 + MIR SINE MIR 1 80 -182 335 70 123 0 chr9 87066591 87066648 -30795979 - MER57A LTR ERV1 0 403 340 2805 179 23 21 chr9 87066653 87067210 -30795417 - MER57A-int LTR ERV1 -2055 5482 4922 2136 100 21 10 chr9 87067210 87067499 -30795128 - AluSc SINE Alu -17 292 1 2805 179 23 21 chr9 87067499 87067517 -30795110 - MER57A-int LTR ERV1 -2615 4922 4906 1190 154 12 130 chr9 87067514 87067796 -30794831 - MER57A-int LTR ERV1 -3622 4498 4263 * 1617 165 0 75 chr9 87067796 87068117 -30794510 + AluJo SINE Alu 5 301 -11 1190 154 12 130 chr9 87068117 87068179 -30794448 - MER57A-int LTR ERV1 -3857 4263 4195 428 216 0 50 chr9 87068297 87068436 -30794191 - MER57A-int LTR ERV1 -3674 3084 2953 2198 118 0 13 chr9 87068758 87069062 -30793565 - AluSx SINE Alu -12 300 1 671 195 29 56 chr9 87069287 87069491 -30793136 - MER57A-int LTR ERV1 -2954 2889 2681 703 195 23 8 chr9 87069491 87069619 -30793008 + FLAM_C SINE Alu 2 131 -2 671 195 29 56 chr9 87069619 87069848 -30792779 - MER57A-int LTR ERV1 -3162 2681 1733 476 247 0 0 chr9 87069962 87070055 -30792572 - MER57A-int LTR ERV1 -2878 3453 3361 355 161 12 49 chr9 87070110 87070191 -30792436 - MER57A-int LTR ERV1 -2990 3341 3264 976 148 9 86 chr9 87070243 87070453 -30792174 - MER57A-int LTR ERV1 -3059 3272 3079 376 165 5 100 chr9 87070465 87070601 -30792026 - MER57A-int LTR ERV1 -3724 1399 1297 * 394 257 34 27 chr9 87070573 87070721 -30791906 - MER57A-int LTR ERV1 -4616 1982 1834 627 226 111 32 chr9 87070721 87070938 -30791689 - MER34C LTR ERV1 -177 408 175 505 272 27 28 chr9 87070948 87071136 -30791491 - MER57A-int LTR ERV1 -4123 3414 841 1848 151 64 75 chr9 87071217 87071551 -30791076 - MER57A-int LTR ERV1 -6705 832 503 2293 142 12 0 chr9 87071551 87071890 -30790737 - MER61A LTR ERV1 0 343 1 1848 151 64 75 chr9 87071890 87071979 -30790648 - MER57A-int LTR ERV1 -7034 503 414 547 188 31 0 chr9 87071979 87072075 -30790552 - MER57A LTR ERV1 -194 209 111 381 291 8 0 chr9 87072081 87072198 -30790429 + MIR SINE MIR 82 199 -63 242 168 5 66 chr9 87072278 87072291 -30790336 - L1M3 LINE L1 -375 5793 5781 2257 106 0 0 chr9 87072291 87072575 -30790052 - AluSc SINE Alu -25 284 1 242 168 5 66 chr9 87072575 87072628 -30789999 - L1M3 LINE L1 -387 5781 5728 1655 242 22 19 chr9 87072660 87073024 -30789603 - MER57A-int LTR ERV1 -7147 390 26 562 284 46 10 chr9 87073024 87073049 -30789578 + MIR SINE MIR 53 76 -186 2258 152 2 45 chr9 87073049 87073372 -30789255 - MER57A LTR ERV1 0 403 101 1735 154 0 63 chr9 87073372 87073691 -30788936 - AluSg SINE Alu -11 299 1 2258 152 2 45 chr9 87073691 87073788 -30788839 - MER57A LTR ERV1 -302 101 1 562 284 46 10 chr9 87073788 87073959 -30788668 + MIR SINE MIR 76 256 -6 1710 242 78 45 chr9 87074274 87074878 -30787749 + MLT1G LTR MaLR 1 590 0 213 343 20 48 chr9 87075381 87075426 -30787201 - MIR3 SINE MIR -62 146 101 2082 109 10 13 chr9 87075426 87075728 -30786899 + AluSx SINE Alu 1 301 -11 213 343 20 48 chr9 87075728 87075828 -30786799 - MIR3 SINE MIR -107 101 5 577 269 0 27 chr9 87076091 87076240 -30786387 + MER63A DNA MER1_type 58 202 -8 201 308 30 30 chr9 87077178 87077311 -30785316 + L2 LINE L2 2925 3057 -215 264 258 100 25 chr9 87077362 87077482 -30785145 + MIR SINE MIR 25 153 -55 314 278 74 9 chr9 87080652 87080760 -30781867 + MIR SINE MIR 32 146 -62 2240 109 0 0 chr9 87080765 87081059 -30781568 + AluSc SINE Alu 1 294 -15 729 169 76 23 chr9 87081183 87081254 -30781373 + MER53 DNA DNA 2 68 -121 234 0 0 0 chr9 87081254 87081280 -30781347 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 729 169 76 23 chr9 87081280 87081380 -30781247 + MER53 DNA DNA 68 182 -7 21 36 0 0 chr9 87081570 87081598 -30781029 + AT_rich Low_complexity Low_complexity 1 28 0 189 143 32 16 chr9 87081600 87081663 -30780964 + (TTTA)n Simple_repeat Simple_repeat 2 65 0 180 297 119 42 chr9 87083016 87083134 -30779493 - L2 LINE L2 -1 3271 3145 251 208 0 0 chr9 87083980 87084033 -30778594 + L2 LINE L2 3261 3313 0 2272 106 0 10 chr9 87084428 87084729 -30777898 + AluSx SINE Alu 1 298 -14 413 239 11 0 chr9 87085186 87085278 -30777349 + MLT1C LTR MaLR 374 466 -1 450 258 60 38 chr9 87085663 87085930 -30776697 - L1ME4a LINE L1 -266 5855 5583 742 185 0 0 chr9 87085964 87086210 -30776417 - AluJb SINE Alu 0 428 183 648 162 0 0 chr9 87086242 87086341 -30776286 - AluJb SINE Alu -130 182 84 705 211 45 57 chr9 87086363 87086610 -30776017 - L1MA9 LINE L1 -30 6282 6039 329 323 43 12 chr9 87089048 87089209 -30773418 + MIR SINE MIR 91 256 -6 1035 174 24 14 chr9 87091260 87091467 -30771160 - Tigger2a DNA MER2_type -35 409 201 1150 164 212 8 chr9 87091467 87091717 -30770910 + AluY SINE Alu 1 301 -10 1129 149 24 48 chr9 87091719 87091927 -30770700 - Tigger2a DNA MER2_type -231 203 1 286 222 0 0 chr9 87092163 87092217 -30770410 + MIR SINE MIR 93 146 -62 549 175 41 0 chr9 87092227 87092324 -30770303 + AluJb SINE Alu 6 106 -206 2325 107 0 0 chr9 87092369 87092668 -30769959 + AluSg SINE Alu 1 299 -11 2864 186 42 0 chr9 87092863 87093363 -30769264 + Tigger7 DNA MER2_type 2 522 -1965 380 148 0 0 chr9 87093375 87093436 -30769191 + Tigger7 DNA MER2_type 2427 2487 0 230 188 16 62 chr9 87093481 87093545 -30769082 - MIR SINE MIR -70 192 132 2640 101 3 8 chr9 87095125 87095490 -30767137 + THE1B LTR MaLR 1 363 -1 2266 97 14 0 chr9 87096371 87096660 -30765967 + AluSx SINE Alu 1 293 -19 316 22 0 43 chr9 87096686 87096732 -30765895 + L1PA10 LINE L1 6125 6168 0 735 179 20 151 chr9 87096778 87096857 -30765770 - MER20 DNA MER1_type 0 219 131 1977 128 0 30 chr9 87096857 87097161 -30765466 - AluJb SINE Alu -17 295 1 735 179 20 151 chr9 87097161 87097333 -30765294 - MER20 DNA MER1_type -88 131 1 353 292 62 21 chr9 87097369 87097513 -30765114 + MIR SINE MIR 34 183 -79 180 0 0 0 chr9 87097810 87097830 -30764797 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 396 0 0 0 chr9 87098619 87098663 -30763964 + (TG)n Simple_repeat Simple_repeat 1 44 0 265 291 29 0 chr9 87099039 87099142 -30763485 + L2 LINE L2 2211 2316 -998 734 178 8 0 chr9 87099814 87099943 -30762684 + FRAM SINE Alu 2 131 -45 758 260 91 0 chr9 87100487 87100706 -30761921 - MIR SINE MIR -21 241 3 1885 164 31 36 chr9 87100984 87101344 -30761283 - MLT1A1 LTR MaLR -3 362 5 978 287 98 3 chr9 87101523 87101858 -30760769 - MLT2E LTR ERVL -261 367 1 21 0 0 0 chr9 87101873 87101894 -30760733 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr9 87102791 87102827 -30759800 + AT_rich Low_complexity Low_complexity 1 36 0 1722 132 0 0 chr9 87102837 87103080 -30759547 + AluSx SINE Alu 64 306 -6 290 269 170 35 chr9 87103342 87103483 -30759144 + MIR SINE MIR 89 248 -14 219 330 0 34 chr9 87104265 87104383 -30758244 + CT-rich Low_complexity Low_complexity 2 115 0 505 318 61 30 chr9 87105181 87105543 -30757084 - L3 LINE CR1 -53 1524 1152 2256 116 3 3 chr9 87105679 87105990 -30756637 - AluSp SINE Alu -2 311 1 2222 105 0 0 chr9 87105992 87106269 -30756358 - AluSq SINE Alu -21 292 16 331 236 159 82 chr9 87107192 87107270 -30755357 - L1MC/D LINE L1 -352 5769 5698 2241 202 71 58 chr9 87107270 87107747 -30754880 - MLT1E2 LTR MaLR 0 626 157 2582 49 0 3 chr9 87107747 87108052 -30754575 - AluY SINE Alu -3 308 5 1691 65 0 5 chr9 87108054 87108255 -30754372 - AluY SINE Alu -111 200 1 2241 202 71 58 chr9 87108255 87108392 -30754235 - MLT1E2 LTR MaLR -469 157 1 331 236 159 82 chr9 87108392 87108611 -30754016 - L1MC/D LINE L1 -423 5698 5567 212 209 12 47 chr9 87108645 87108731 -30753896 + (TTA)n Simple_repeat Simple_repeat 2 84 0 671 282 44 0 chr9 87108899 87109080 -30753547 - MER63A DNA MER1_type 0 210 22 272 346 26 19 chr9 87109253 87109409 -30753218 + MIR SINE MIR 35 191 -71 192 121 0 0 chr9 87109754 87109787 -30752840 - L2 LINE L2 -2 3311 3279 324 286 36 0 chr9 87109866 87109978 -30752649 - MIR SINE MIR -73 189 74 2378 81 0 3 chr9 87110596 87110892 -30751735 - AluY SINE Alu -16 295 1 231 242 32 0 chr9 87110996 87111058 -30751569 + MIR SINE MIR 124 187 -75 2035 125 3 3 chr9 87111110 87111397 -30751230 + AluSx SINE Alu 1 287 -25 28 29 0 0 chr9 87111400 87111435 -30751192 + AT_rich Low_complexity Low_complexity 1 35 0 232 180 80 0 chr9 87111459 87111509 -30751118 + L2 LINE L2 3210 3263 -9 186 333 0 23 chr9 87111732 87111819 -30750808 - MIR SINE MIR -119 143 59 288 265 45 76 chr9 87112255 87112387 -30750240 + L2 LINE L2 3179 3306 -7 1089 168 22 16 chr9 87113012 87113197 -30749430 - MER5A DNA MER1_type 0 189 4 1599 169 20 37 chr9 87113614 87113910 -30748717 - AluJo SINE Alu -21 291 1 192 77 0 0 chr9 87114034 87114060 -30748567 + (GAAAA)n Simple_repeat Simple_repeat 4 29 0 822 217 6 6 chr9 87114070 87114227 -30748400 + FRAM SINE Alu 2 158 -8 21 0 0 0 chr9 87114761 87114782 -30747845 + AT_rich Low_complexity Low_complexity 1 21 0 736 243 29 15 chr9 87114844 87115050 -30747577 + L1ME3 LINE L1 5892 6100 -62 547 221 37 15 chr9 87115128 87115264 -30747363 + L1ME LINE L1 5684 5822 -348 1811 136 0 85 chr9 87115296 87115646 -30746981 + AluSx SINE Alu 1 312 0 189 353 107 20 chr9 87116452 87116602 -30746025 + L2 LINE L2 2897 3059 -213 475 275 28 14 chr9 87116942 87117084 -30745543 + MIR3 SINE MIR 16 159 -49 1291 111 0 0 chr9 87117374 87117546 -30745081 + AluSg/x SINE Alu 139 310 0 1831 132 7 4 chr9 87118115 87118415 -30744212 + AluSq SINE Alu 11 311 0 503 241 31 25 chr9 87118484 87118646 -30743981 - MER103 DNA DNA 0 166 4 876 127 0 15 chr9 87119171 87119305 -30743322 - AluSg/x SINE Alu -20 292 161 1842 242 72 13 chr9 87119817 87120454 -30742173 + L1ME2 LINE L1 2371 3045 -3101 2087 238 30 10 chr9 87120461 87120961 -30741666 - LTR40a LTR ERVL -9 510 1 745 261 102 6 chr9 87120970 87121295 -30741332 + L1ME2 LINE L1 3052 3407 -2739 2025 215 31 53 chr9 87121314 87121822 -30740805 - MLT1D LTR MaLR -6 499 3 656 261 46 25 chr9 87121847 87122109 -30740518 + L1ME2 LINE L1 3438 3710 -2436 281 210 16 16 chr9 87122109 87122171 -30740456 - MER81 DNA DNA 0 114 53 1280 264 31 33 chr9 87122194 87122614 -30740013 + L1ME2 LINE L1 3705 4123 -2023 1637 266 117 6 chr9 87122633 87123381 -30739246 + L1ME2 LINE L1 4387 5264 -882 2085 166 93 103 chr9 87123381 87123707 -30738920 - MLT2B1 LTR ERVL 0 520 199 2112 114 0 0 chr9 87123707 87123997 -30738630 - AluSg1 SINE Alu -19 290 1 2085 166 93 103 chr9 87123997 87124195 -30738432 - MLT2B1 LTR ERVL -321 199 1 213 211 0 0 chr9 87124224 87124262 -30738365 + (CCTA)n Simple_repeat Simple_repeat 1 38 0 2964 193 28 105 chr9 87124263 87125217 -30737410 + L1ME2 LINE L1 5280 6160 -4 1773 186 40 9 chr9 87126478 87126806 -30735821 + MER58B DNA MER1_type 1 338 -3 258 318 35 0 chr9 87127080 87127165 -30735462 - 5S rRNA rRNA -33 88 1 209 255 43 64 chr9 87127554 87127648 -30734979 + MIR SINE MIR 30 121 -141 536 325 48 14 chr9 87127962 87128171 -30734456 - L3 LINE CR1 -75 1502 1287 1536 196 45 100 chr9 87128249 87128799 -30733828 - Charlie1b DNA MER1_type -1 522 3 237 309 191 8 chr9 87129902 87130028 -30732599 - MIR SINE MIR -13 249 101 897 144 15 75 chr9 87130028 87130057 -30732570 - MER53 DNA DNA 0 189 160 2277 120 0 3 chr9 87130057 87130366 -30732261 + AluSx SINE Alu 1 308 -4 897 144 15 75 chr9 87130366 87130537 -30732090 - MER53 DNA DNA -29 160 1 213 295 82 0 chr9 87130775 87130836 -30731791 + L2 LINE L2 3149 3214 -58 192 341 12 12 chr9 87131100 87131182 -30731445 + MIR3 SINE MIR 113 194 -14 1055 170 26 5 chr9 87131850 87132044 -30730583 + MER3 DNA MER1_type 6 203 -6 1605 138 4 0 chr9 87132251 87132483 -30730144 - AluSx SINE Alu -79 233 1 1906 139 23 20 chr9 87132704 87133005 -30729622 + AluSx SINE Alu 1 302 -10 1440 173 58 25 chr9 87133408 87133532 -30729095 + AluJb SINE Alu 1 120 -192 228 35 0 0 chr9 87133532 87133561 -30729066 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 1440 173 58 25 chr9 87133561 87133713 -30728914 + AluJb SINE Alu 120 286 -26 265 343 167 5 chr9 87133738 87133942 -30728685 - MIR SINE MIR -6 256 20 231 114 0 0 chr9 87134290 87134325 -30728302 + (TG)n Simple_repeat Simple_repeat 1 35 0 404 283 82 8 chr9 87135299 87135487 -30727140 - MLT1I LTR MaLR -199 210 1 398 308 54 18 chr9 87135579 87135755 -30726872 + MIR3 SINE MIR 3 182 -47 488 258 81 108 chr9 87136130 87136548 -30726079 - MLT1I LTR MaLR 0 409 3 228 381 0 8 chr9 87136686 87136804 -30725823 + L2 LINE L2 2920 3036 -236 22 0 0 0 chr9 87136821 87136843 -30725784 + AT_rich Low_complexity Low_complexity 1 22 0 1991 211 0 14 chr9 87137326 87137696 -30724931 + MLT1A1 LTR MaLR 1 365 0 347 293 63 54 chr9 87138000 87138205 -30724422 - MIR SINE MIR -6 256 50 180 253 101 38 chr9 87138525 87138604 -30724023 - MIR SINE MIR -71 137 54 185 281 47 0 chr9 87138731 87138795 -30723832 + MIR SINE MIR 126 192 -70 1788 176 0 6 chr9 87138823 87139136 -30723491 + AluJb SINE Alu 1 311 -1 210 322 0 78 chr9 87139900 87140015 -30722612 - MIR SINE MIR -58 150 77 362 316 77 8 chr9 87140136 87140253 -30722374 - MIR SINE MIR -128 134 10 322 224 71 20 chr9 87140652 87140750 -30721877 - MIR SINE MIR -109 153 51 205 400 48 9 chr9 87141971 87142076 -30720551 + MIR3 SINE MIR 15 123 -85 220 336 37 9 chr9 87142321 87142428 -30720199 - MIR SINE MIR -62 146 37 2918 140 9 0 chr9 87142593 87143015 -30719612 + MSTA LTR MaLR 1 426 -2 228 313 75 0 chr9 87144344 87144424 -30718203 - L2 LINE L2 -1 3271 3186 631 224 51 13 chr9 87144678 87144834 -30717793 + MLT1E LTR MaLR 1 162 -431 1869 163 52 47 chr9 87145028 87145391 -30717236 + MLT1A1 LTR MaLR 1 365 0 201 74 0 0 chr9 87145728 87145755 -30716872 + (A)n Simple_repeat Simple_repeat 1 27 0 289 295 107 36 chr9 87146378 87146490 -30716137 - L2 LINE L2 0 3272 3153 261 98 0 0 chr9 87146959 87147000 -30715627 + (TA)n Simple_repeat Simple_repeat 2 42 0 1042 264 117 29 chr9 87147039 87147516 -30715111 + LTR33 LTR ERVL 1 519 -2 23 0 0 0 chr9 87147673 87147696 -30714931 + AT_rich Low_complexity Low_complexity 1 23 0 1984 150 3 6 chr9 87147706 87148019 -30714608 + AluJb SINE Alu 1 312 0 228 333 47 107 chr9 87148283 87148583 -30714044 + L2 LINE L2 2980 3261 -11 315 315 54 13 chr9 87148610 87148759 -30713868 - MIR3 SINE MIR -3 205 51 189 196 0 0 chr9 87149318 87149364 -30713263 + CT-rich Low_complexity Low_complexity 1 46 0 219 114 0 0 chr9 87149967 87150002 -30712625 + (TG)n Simple_repeat Simple_repeat 2 36 0 478 313 43 6 chr9 87150030 87150193 -30712434 + Charlie8 DNA MER1_type 107 275 -2142 229 311 38 28 chr9 87150397 87150503 -30712124 - L2 LINE L2 -60 3253 3147 1851 228 37 43 chr9 87150588 87151096 -30711531 - MLT1D LTR MaLR 0 505 1 465 262 137 69 chr9 87151101 87151509 -30711118 - MLT1J2 LTR MaLR 0 450 15 225 233 14 14 chr9 87151849 87151922 -30710705 + (TA)n Simple_repeat Simple_repeat 2 74 0 325 208 48 88 chr9 87151976 87152101 -30710526 + L1MC4 LINE L1 6613 6732 -1310 393 381 52 43 chr9 87152137 87152579 -30710048 - L2 LINE L2 -617 2697 2260 1869 132 3 31 chr9 87152579 87152868 -30709759 + AluSx SINE Alu 21 301 -11 393 381 52 43 chr9 87152868 87153314 -30709313 - L2 LINE L2 -1054 2260 1801 330 296 9 9 chr9 87153826 87153934 -30708693 + MIR SINE MIR 149 256 -6 258 250 119 12 chr9 87154173 87154257 -30708370 + MIR SINE MIR 60 152 -56 227 301 66 44 chr9 87155109 87155245 -30707382 - MIR3 SINE MIR -4 204 66 271 311 143 25 chr9 87155276 87155437 -30707190 - MIR SINE MIR -12 250 71 242 308 12 4 chr9 87155765 87155860 -30706767 - MLT1K LTR MaLR -339 249 140 1613 158 54 158 chr9 87155889 87156409 -30706218 + MER110A LTR ERV1 3 468 0 337 316 65 42 chr9 87156816 87157031 -30705596 + MIR SINE MIR 13 232 -30 318 345 41 25 chr9 87157256 87157440 -30705187 + MIR SINE MIR 5 190 -70 399 41 0 0 chr9 87158570 87158619 -30704008 + (TG)n Simple_repeat Simple_repeat 2 50 0 207 100 0 0 chr9 87158832 87158862 -30703765 + (T)n Simple_repeat Simple_repeat 1 30 0 782 215 29 19 chr9 87159025 87159234 -30703393 - L1MEd LINE L1 -5014 1105 895 499 304 80 27 chr9 87159387 87159723 -30702904 - L1MEd LINE L1 -5187 932 579 21 0 0 0 chr9 87159727 87159748 -30702879 + AT_rich Low_complexity Low_complexity 1 21 0 234 231 39 0 chr9 87159988 87160040 -30702587 - L1MEd LINE L1 -5738 381 328 528 138 28 64 chr9 87160218 87160327 -30702300 + L1 LINE L1 4103 4207 -1939 2122 115 7 3 chr9 87160368 87160656 -30701971 + AluSx SINE Alu 1 289 -23 311 0 0 25 chr9 87160660 87160700 -30701927 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 2568 155 24 0 chr9 87160729 87161154 -30701473 + L1MD1 LINE L1 5808 6242 0 238 287 62 70 chr9 87161822 87161951 -30700676 - MIR3 SINE MIR -67 141 14 284 323 247 11 chr9 87162067 87162253 -30700374 + MIR SINE MIR 20 249 -13 226 336 80 26 chr9 87162598 87162711 -30699916 + L2 LINE L2 3172 3290 -23 767 255 27 0 chr9 87163552 87163740 -30698887 - L2 LINE L2 -246 3067 2875 32 26 0 0 chr9 87163752 87163791 -30698836 + AT_rich Low_complexity Low_complexity 1 39 0 567 309 50 27 chr9 87163839 87164098 -30698529 - L2 LINE L2 -448 2866 2602 191 354 106 12 chr9 87164322 87164483 -30698144 + MIR SINE MIR 81 256 -6 317 247 72 21 chr9 87164673 87164770 -30697857 + L2 LINE L2 3208 3309 -4 2146 118 9 19 chr9 87164939 87165254 -30697373 - AluSx SINE Alu 0 312 1 2121 94 0 14 chr9 87165267 87165580 -30697047 - AluSc SINE Alu 0 309 1 244 252 4 52 chr9 87166235 87166368 -30696259 - L1ME2 LINE L1 -231 5939 5812 469 127 0 51 chr9 87166435 87166514 -30696113 - AluJb SINE Alu -12 300 226 954 119 0 8 chr9 87166533 87166667 -30695960 - AluJb SINE Alu -179 133 1 403 284 74 0 chr9 87166671 87166819 -30695808 + MIR SINE MIR 103 261 -1 1144 164 23 0 chr9 87167057 87167228 -30695399 + FAM SINE Alu 1 175 0 183 329 167 40 chr9 87168108 87168336 -30694291 - L2 LINE L2 -191 3081 2825 2234 114 0 7 chr9 87168743 87169049 -30693578 + AluSg SINE Alu 1 304 -6 359 254 23 62 chr9 87169568 87169745 -30692882 - L1ME4a LINE L1 -8 6113 5944 1549 226 27 24 chr9 87170635 87171007 -30691620 - L1MB8 LINE L1 -6 6172 5800 404 247 75 48 chr9 87171022 87171168 -30691459 + LTR67 LTR ERVL 408 557 0 202 278 0 19 chr9 87171325 87171379 -30691248 + MIR3 SINE MIR 151 203 -5 330 263 39 78 chr9 87172449 87172654 -30689973 - Charlie7 DNA MER1_type -1 2611 2415 243 235 73 15 chr9 87172630 87172698 -30689929 - Charlie7 DNA MER1_type -2516 96 25 * 21 57 0 0 chr9 87173063 87173098 -30689529 + AT_rich Low_complexity Low_complexity 1 35 0 357 308 47 52 chr9 87173104 87173320 -30689307 - MIR SINE MIR -41 221 8 207 270 54 63 chr9 87173417 87173528 -30689099 + MIR SINE MIR 108 217 -45 209 289 48 0 chr9 87173720 87173803 -30688824 - MIR3 SINE MIR -32 176 90 254 341 32 32 chr9 87173999 87174122 -30688505 + MIR3 SINE MIR 1 123 -85 1739 149 11 15 chr9 87174250 87174519 -30688108 - AluJo SINE Alu -32 280 13 292 308 126 72 chr9 87174761 87175079 -30687548 - L2 LINE L2 -13 3259 2925 672 217 140 47 chr9 87175175 87175191 -30687436 + MIR SINE MIR 6 19 -243 1441 255 15 6 chr9 87175191 87175528 -30687099 + MER58B DNA MER1_type 1 340 -1 672 217 140 47 chr9 87175528 87175746 -30686881 + MIR SINE MIR 19 262 0 182 311 33 22 chr9 87175732 87175822 -30686805 + L2 LINE L2 3223 3313 0 * 771 214 30 6 chr9 87176415 87176583 -30686044 + MIR SINE MIR 29 200 -62 22 80 0 0 chr9 87176638 87176688 -30685939 + AT_rich Low_complexity Low_complexity 1 50 0 1390 122 0 5 chr9 87176689 87176886 -30685741 - MER2 DNA MER2_type -149 196 1 207 100 0 0 chr9 87177558 87177588 -30685039 + (A)n Simple_repeat Simple_repeat 1 30 0 708 118 20 142 chr9 87177862 87177986 -30684641 + MER96B DNA MER1_type? 1 92 -325 2329 100 3 0 chr9 87177986 87178286 -30684341 + AluSc SINE Alu 2 302 -7 708 118 20 142 chr9 87178286 87178365 -30684262 + MER96B DNA MER1_type? 92 179 -238 189 321 0 0 chr9 87178629 87178682 -30683945 + L2 LINE L2 3211 3263 -9 239 286 13 0 chr9 87178715 87178792 -30683835 - MIR SINE MIR 0 262 185 2939 81 8 0 chr9 87178862 87179221 -30683406 + THE1B LTR MaLR 1 362 -2 209 289 48 0 chr9 87179503 87179586 -30683041 - MIR3 SINE MIR -32 176 90 254 341 32 32 chr9 87179782 87179905 -30682722 + MIR3 SINE MIR 1 123 -85 1755 148 11 15 chr9 87180033 87180304 -30682323 - AluJo SINE Alu -32 280 11 234 313 150 58 chr9 87180544 87180838 -30681789 - L2 LINE L2 -13 3259 2939 672 217 140 47 chr9 87180956 87180972 -30681655 + MIR SINE MIR 6 19 -243 1441 255 15 6 chr9 87180972 87181309 -30681318 + MER58B DNA MER1_type 1 340 -1 672 217 140 47 chr9 87181309 87181527 -30681100 + MIR SINE MIR 19 262 0 182 311 33 22 chr9 87181513 87181603 -30681024 + L2 LINE L2 3223 3313 0 * 562 325 60 57 chr9 87183169 87183501 -30679126 - L2 LINE L2 0 3272 2940 335 289 85 3 chr9 87184270 87184425 -30678202 - MIR SINE MIR -44 218 52 28 48 0 0 chr9 87184485 87184527 -30678100 + AT_rich Low_complexity Low_complexity 1 42 0 415 301 21 15 chr9 87185563 87185725 -30676902 + MIR3 SINE MIR 17 183 -49 250 347 0 0 chr9 87185733 87185805 -30676822 - L2 LINE L2 -8 3264 3193 207 211 39 0 chr9 87186686 87186738 -30675889 + MIR SINE MIR 43 96 -112 213 263 25 38 chr9 87187199 87187279 -30675348 + L2 LINE L2 3216 3294 -19 1371 292 109 66 chr9 87188232 87189582 -30673045 + L2 LINE L2 1894 3313 0 330 261 141 0 chr9 87189799 87189891 -30672736 - L2 LINE L2 0 3313 3209 532 280 119 13 chr9 87189954 87190190 -30672437 - MIR SINE MIR 0 262 2 313 340 92 35 chr9 87190369 87190716 -30671911 - L2 LINE L2 -362 2952 2586 489 264 73 51 chr9 87192825 87193039 -30669588 - MIR SINE MIR -27 235 16 622 335 141 24 chr9 87193357 87194116 -30668511 - L2 LINE L2 -33 3280 2431 187 351 0 0 chr9 87194127 87194184 -30668443 - MIR SINE MIR -159 103 47 566 308 11 16 chr9 87194798 87194980 -30667647 - MER5A DNA MER1_type -8 181 1 213 219 0 0 chr9 87195258 87195299 -30667328 + (TG)n Simple_repeat Simple_repeat 1 41 0 1355 89 84 5 chr9 87195643 87195873 -30666754 - AluSg/x SINE Alu 0 350 106 405 123 57 16 chr9 87198229 87198351 -30664276 + (TA)n Simple_repeat Simple_repeat 2 128 0 180 0 0 0 chr9 87198476 87198496 -30664131 + (TC)n Simple_repeat Simple_repeat 1 20 0 200 291 112 107 chr9 87198512 87198708 -30663919 + L2 LINE L2 3075 3271 -1 2264 66 42 0 chr9 87199421 87199707 -30662920 - AluY SINE Alu -13 298 1 282 254 114 44 chr9 87199774 87199888 -30662739 - MIR SINE MIR -18 244 123 2226 183 48 5 chr9 87200051 87200493 -30662134 + L1MC3 LINE L1 7325 7785 0 282 278 65 59 chr9 87200579 87200748 -30661879 - L2 LINE L2 -942 2372 2203 189 322 104 35 chr9 87201926 87202041 -30660586 + MIR SINE MIR 44 166 -96 281 319 85 0 chr9 87202041 87202135 -30660492 - L2 LINE L2 -8 3264 3163 358 311 47 47 chr9 87202367 87202560 -30660067 + MIR SINE MIR 20 212 -50 192 303 15 15 chr9 87203847 87203913 -30658714 + L2 LINE L2 3196 3261 -11 368 354 51 0 chr9 87204617 87204792 -30657835 + MIR SINE MIR 31 214 -48 668 246 53 10 chr9 87204805 87205012 -30657615 + MIR SINE MIR 45 260 -2 843 265 83 15 chr9 87206688 87206952 -30655675 - L1ME3 LINE L1 0 6162 5881 2014 178 83 13 chr9 87207567 87207900 -30654727 + MLT2D LTR ERVL 1 309 -105 189 0 0 0 chr9 87207900 87207921 -30654706 + (TC)n Simple_repeat Simple_repeat 2 22 0 480 77 0 0 chr9 87207923 87207988 -30654639 + (CA)n Simple_repeat Simple_repeat 2 66 0 2014 178 83 13 chr9 87207988 87208038 -30654589 + MLT2D LTR ERVL 309 414 0 186 43 0 0 chr9 87209210 87209233 -30653394 + (TC)n Simple_repeat Simple_repeat 2 24 0 265 274 29 20 chr9 87209359 87209461 -30653166 + MIR SINE MIR 83 185 -77 21 57 0 0 chr9 87210007 87210042 -30652585 + AT_rich Low_complexity Low_complexity 1 35 0 31 0 0 0 chr9 87210089 87210120 -30652507 + AT_rich Low_complexity Low_complexity 1 31 0 21 57 0 0 chr9 87210227 87210262 -30652365 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr9 87211224 87211253 -30651374 + GC_rich Low_complexity Low_complexity 1 29 0 494 300 50 0 chr9 87211676 87211816 -30650811 + MIR SINE MIR 3 149 -113 1013 209 33 19 chr9 87211845 87212056 -30650571 - MER20 DNA MER1_type -4 215 2 305 295 32 0 chr9 87212119 87212214 -30650413 + MIR SINE MIR 47 144 -118 450 289 39 8 chr9 87212433 87212561 -30650066 - MIR SINE MIR -108 154 23 850 182 19 13 chr9 87213803 87213957 -30648670 - AluJo SINE Alu -157 155 1 226 327 62 35 chr9 87214072 87214185 -30648442 + MIR SINE MIR 23 138 -124 292 240 67 0 chr9 87214481 87214556 -30648071 - L2 LINE L2 -840 2474 2395 1478 181 84 75 chr9 87214571 87214942 -30647685 - MLT1A2 LTR MaLR 0 374 1 378 279 91 18 chr9 87216013 87216178 -30646449 - MIR SINE MIR -6 256 80 278 333 94 28 chr9 87216940 87217120 -30645507 - MIR SINE MIR -70 192 1 222 339 65 32 chr9 87217197 87217321 -30645306 + L2 LINE L2 3133 3260 -12 1569 154 11 0 chr9 87218161 87218428 -30644199 + L1MA4 LINE L1 6020 6289 -11 964 226 35 0 chr9 87218736 87218935 -30643692 + MIR SINE MIR 6 211 -51 377 247 21 0 chr9 87218936 87219033 -30643594 + L1MD3 LINE L1 7730 7828 -167 850 271 78 57 chr9 87220053 87220565 -30642062 - L1ME4a LINE L1 -188 5933 5411 207 284 163 14 chr9 87220571 87220712 -30641915 - MIR SINE MIR -96 166 5 203 271 34 0 chr9 87221474 87221533 -30641094 - L2 LINE L2 -1 3312 3252 1109 297 36 18 chr9 87221573 87221960 -30640667 + LTR16A LTR ERVL 52 445 -5 291 309 68 29 chr9 87222548 87222754 -30639873 - MIR3 SINE MIR -50 212 2 845 314 44 3 chr9 87222950 87223265 -30639362 + L3 LINE CR1 620 947 -630 613 81 0 0 chr9 87223282 87223356 -30639271 - AluY SINE Alu -235 83 10 1584 93 5 5 chr9 87223356 87223571 -30639056 + AluSg/x SINE Alu 85 299 -10 329 311 21 11 chr9 87223872 87224026 -30638601 + MIR SINE MIR 72 226 -36 180 231 220 55 chr9 87224060 87224151 -30638476 - L3 LINE CR1 -1460 117 12 330 115 0 39 chr9 87224453 87224505 -30638122 + MIR3 SINE MIR 111 160 -48 23 0 0 0 chr9 87225189 87225212 -30637415 + AT_rich Low_complexity Low_complexity 1 23 0 1737 238 42 22 chr9 87225664 87226159 -30636468 - Charlie4a DNA MER1_type -3 505 1 200 284 34 34 chr9 87227538 87227626 -30635001 - L2 LINE L2 -11 3261 3174 268 258 0 65 chr9 87227850 87227943 -30634684 + MIR SINE MIR 86 172 -90 243 88 0 0 chr9 87228280 87228314 -30634313 + (TC)n Simple_repeat Simple_repeat 1 34 0 28 0 0 0 chr9 87228334 87228362 -30634265 + AT_rich Low_complexity Low_complexity 1 28 0 453 302 16 19 chr9 87228511 87228681 -30633946 + MIR3 SINE MIR 3 173 -64 1730 272 134 26 chr9 87228819 87229277 -30633350 + L2 LINE L2 2151 2558 -755 2432 92 3 0 chr9 87229277 87229581 -30633046 - AluSp SINE Alu -6 307 3 1730 272 134 26 chr9 87229581 87230159 -30632468 + L2 LINE L2 2558 3313 0 339 316 115 6 chr9 87230193 87230367 -30632260 - MIR SINE MIR -65 197 5 180 0 0 0 chr9 87230415 87230435 -30632192 + (TTG)n Simple_repeat Simple_repeat 2 21 0 385 313 48 18 chr9 87231400 87231566 -30631061 - MIR SINE MIR -70 192 22 284 269 166 52 chr9 87231968 87232161 -30630466 + L2 LINE L2 2844 3058 -255 1300 234 147 20 chr9 87232161 87232609 -30630018 + MLT1D LTR MaLR 1 505 0 1602 169 92 34 chr9 87232755 87233104 -30629523 - L1MC3 LINE L1 -267 7518 7150 360 304 67 7 chr9 87233173 87233308 -30629319 - MIR SINE MIR -112 150 8 230 83 28 0 chr9 87233495 87233531 -30629096 - L1MC3 LINE L1 -172 7613 7577 384 260 48 10 chr9 87233740 87233844 -30628783 - MIR3 SINE MIR -87 121 14 257 350 20 0 chr9 87234476 87234592 -30628035 - MIR SINE MIR -65 143 35 2374 172 52 2 chr9 87234715 87235121 -30627506 - MSTB LTR MaLR 0 426 1 260 285 77 31 chr9 87235490 87235620 -30627007 + L2 LINE L2 3137 3272 0 1996 209 58 31 chr9 87235988 87236472 -30626155 - L1MB5 LINE L1 -8 6166 5670 604 300 86 14 chr9 87236978 87237188 -30625439 - MIR SINE MIR -25 237 13 2244 88 0 3 chr9 87237335 87237619 -30625008 + AluY SINE Alu 1 283 -28 430 91 0 0 chr9 87237622 87237677 -30624950 + Alu SINE Alu 243 297 -14 214 308 94 17 chr9 87238280 87238397 -30624230 + MIR SINE MIR 59 184 -78 270 267 40 0 chr9 87238519 87238594 -30624033 + (TATATG)n Simple_repeat Simple_repeat 6 83 0 2028 165 139 3 chr9 87239417 87239792 -30622835 + MSTB1 LTR MaLR 7 432 0 258 29 29 0 chr9 87239862 87239896 -30622731 + MADE1 DNA Mariner 46 80 0 627 308 21 47 chr9 87240076 87240310 -30622317 - MIR SINE MIR -19 243 16 393 306 46 17 chr9 87240348 87240521 -30622106 - MIR SINE MIR -13 249 72 207 0 0 0 chr9 87240533 87240556 -30622071 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 45263 38 2 0 chr9 87240558 87246694 -30615933 - L1PA4 LINE L1 -8 6147 1 183 186 93 0 chr9 87246700 87246743 -30615884 - MIR SINE MIR -200 62 16 469 128 77 0 chr9 87247393 87247471 -30615156 + MER3 DNA MER1_type 126 209 0 280 200 0 0 chr9 87247428 87247478 -30615149 - MER3 DNA MER1_type -119 90 41 * 275 305 12 0 chr9 87247636 87247718 -30614909 + MER96 DNA MER1_type? 8 90 -85 307 361 145 16 chr9 87247735 87247984 -30614643 + L2 LINE L2 2967 3247 -25 283 262 65 60 chr9 87248831 87248999 -30613628 - MIR3 SINE MIR -24 184 16 363 311 48 6 chr9 87249175 87249342 -30613285 + MIR SINE MIR 34 207 -55 258 286 38 76 chr9 87250253 87250358 -30612269 - L2 LINE L2 -31 3241 3141 413 249 0 88 chr9 87250415 87250596 -30612031 + MIR SINE MIR 96 260 -2 212 173 39 0 chr9 87250935 87250987 -30611640 + CT-rich Low_complexity Low_complexity 4 57 0 658 330 48 31 chr9 87251114 87251468 -30611159 - LTR16C LTR ERVL -11 480 121 189 0 0 0 chr9 87252115 87252136 -30610491 + (T)n Simple_repeat Simple_repeat 1 21 0 220 337 0 32 chr9 87252539 87252634 -30609993 - MIR SINE MIR -135 127 36 360 305 71 14 chr9 87253084 87253225 -30609402 + L2 LINE L2 3121 3269 -3 270 276 23 23 chr9 87253662 87253749 -30608878 + MIR SINE MIR 100 186 -76 267 336 8 42 chr9 87255171 87255290 -30607337 + L2 LINE L2 3139 3253 -19 295 254 174 14 chr9 87255562 87255700 -30606927 + MIR SINE MIR 97 256 -6 230 266 43 43 chr9 87256405 87256499 -30606128 - MIR SINE MIR -109 153 60 454 196 5 121 chr9 87257020 87257219 -30605408 - L1M4 LINE L1 -997 5149 4974 362 305 102 39 chr9 87257406 87257888 -30604739 - L1M4 LINE L1 -1938 4208 3685 187 333 24 36 chr9 87258234 87258318 -30604309 - MIR SINE MIR -1 261 179 219 348 43 0 chr9 87259032 87259124 -30603503 - MIR SINE MIR -77 185 90 206 322 76 1 chr9 87259333 87259480 -30603147 + MIR SINE MIR 16 198 -64 258 231 33 83 chr9 87260306 87260427 -30602200 + L2 LINE L2 3199 3313 0 512 289 104 24 chr9 87260807 87261018 -30601609 + MIR SINE MIR 19 246 -16 5191 49 0 30 chr9 87261557 87262191 -30600436 - L1PA7 LINE L1 0 6154 5540 460 326 82 11 chr9 87262696 87262880 -30599747 - MIR SINE MIR -46 216 20 343 274 177 21 chr9 87263870 87264056 -30598571 + MIR SINE MIR 37 251 -11 691 288 47 62 chr9 87265217 87265669 -30596958 + LTR16A1 LTR ERVL 13 457 0 180 111 0 0 chr9 87265703 87265730 -30596897 + (TG)n Simple_repeat Simple_repeat 1 27 0 261 287 60 72 chr9 87266269 87266436 -30596191 + L3 LINE CR1 1412 1576 -1 358 297 70 74 chr9 87268462 87268980 -30593647 - L2 LINE L2 -25 3288 2777 212 282 6 138 chr9 87269091 87269272 -30593355 - L2 LINE L2 -98 3174 3018 477 238 66 16 chr9 87270113 87270235 -30592392 - MIR SINE MIR -61 147 20 427 244 76 0 chr9 87270444 87270563 -30592064 - MIR SINE MIR -74 188 61 22 0 0 0 chr9 87271261 87271283 -30591344 + AT_rich Low_complexity Low_complexity 1 22 0 993 223 10 0 chr9 87271500 87271697 -30590930 - MER58A DNA MER1_type 0 224 26 26 74 0 0 chr9 87272823 87272877 -30589750 + AT_rich Low_complexity Low_complexity 1 54 0 2110 137 3 3 chr9 87273140 87273447 -30589180 + AluSx SINE Alu 1 307 -5 380 354 15 15 chr9 87273911 87274109 -30588518 - MIR SINE MIR -5 257 60 969 164 62 11 chr9 87274231 87274408 -30588219 + MER20 DNA MER1_type 34 219 0 277 320 141 0 chr9 87274707 87274863 -30587764 + L2 LINE L2 2596 2773 -541 288 337 51 28 chr9 87275033 87275211 -30587416 + L2 LINE L2 2918 3099 -173 206 206 31 31 chr9 87275268 87275365 -30587262 + (TTATA)n Simple_repeat Simple_repeat 3 99 0 * 238 111 37 62 chr9 87275316 87275397 -30587230 + (TTAAA)n Simple_repeat Simple_repeat 5 83 0 238 273 13 0 chr9 87275408 87275485 -30587142 + L1M4 LINE L1 4748 4825 -1321 23 0 0 0 chr9 87275580 87275603 -30587024 + AT_rich Low_complexity Low_complexity 1 23 0 343 274 62 46 chr9 87275785 87276420 -30586207 + L1M4 LINE L1 5198 5893 -228 2316 107 3 0 chr9 87277000 87277309 -30585318 + AluSx SINE Alu 1 310 -2 208 272 8 112 chr9 87277448 87277546 -30585081 + L3 LINE CR1 1264 1348 -229 1866 151 51 38 chr9 87277546 87277916 -30584711 - THE1C LTR MaLR 0 375 1 208 272 8 112 chr9 87277916 87277942 -30584685 + L3 LINE CR1 1348 1375 -202 237 290 0 14 chr9 87278499 87278568 -30584059 + LTR67 LTR ERVL 489 556 -1 188 258 106 0 chr9 87278605 87278671 -30583956 - L2 LINE L2 0 3272 3200 276 274 47 47 chr9 87279330 87279436 -30583191 + MIR SINE MIR 41 146 -62 2044 156 27 113 chr9 87279531 87280081 -30582546 + MLT1D LTR MaLR 1 503 -2 579 232 40 67 chr9 87280262 87280359 -30582268 - MIR SINE MIR -9 253 155 2310 116 3 0 chr9 87280359 87280670 -30581957 - AluSx SINE Alu 0 312 1 579 232 40 67 chr9 87280670 87280796 -30581831 - MIR SINE MIR -107 155 36 210 143 0 0 chr9 87281229 87281264 -30581363 + (TG)n Simple_repeat Simple_repeat 1 35 0 180 0 0 0 chr9 87281279 87281299 -30581328 + (TG)n Simple_repeat Simple_repeat 1 20 0 7679 29 0 0 chr9 87281494 87282978 -30579649 - L1PA4 LINE L1 -3 6152 4665 5777 27 6 0 chr9 87282978 87283650 -30578977 + L1PA4 LINE L1 3986 4661 -1485 300 27 0 0 chr9 87283681 87283718 -30578909 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 293 339 17 9 chr9 87283815 87283930 -30578697 + MER5B DNA MER1_type 18 133 -45 190 226 0 97 chr9 87283960 87284022 -30578605 - MER5B DNA MER1_type -121 57 2 292 307 100 7 chr9 87284121 87284271 -30578356 + MIR SINE MIR 91 254 -8 3559 131 9 15 chr9 87284561 87285089 -30577538 - MER1A DNA MER1_type 0 527 3 2576 62 0 0 chr9 87286337 87286641 -30575986 - AluY SINE Alu -7 304 1 279 0 0 0 chr9 87287086 87287117 -30575510 + (CA)n Simple_repeat Simple_repeat 2 32 0 1853 118 8 8 chr9 87287159 87287422 -30575205 - AluSx SINE Alu -49 263 1 664 200 0 43 chr9 87288443 87288583 -30574044 - MER63 DNA MER1_type -302 760 1 2134 135 0 3 chr9 87290383 87290686 -30571941 - AluSq SINE Alu -11 302 1 185 86 57 0 chr9 87292091 87292126 -30570501 + (TCTCTG)n Simple_repeat Simple_repeat 6 42 0 397 243 52 17 chr9 87292138 87292311 -30570316 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 371 287 6 23 chr9 87292252 87292426 -30570201 + CT-rich Low_complexity Low_complexity 2 172 0 * 315 248 40 56 chr9 87293919 87294044 -30568583 - MIR3 SINE MIR -9 199 77 1040 236 21 0 chr9 87295055 87295296 -30567331 - MIR SINE MIR -9 253 8 245 193 18 0 chr9 87295592 87295649 -30566978 - MIR SINE MIR -105 157 100 891 213 126 90 chr9 87296369 87296726 -30565901 - MLT1C LTR MaLR 0 467 21 288 318 116 42 chr9 87297565 87298167 -30564460 - L2 LINE L2 -74 3198 2553 238 212 15 15 chr9 87298637 87298703 -30563924 + CT-rich Low_complexity Low_complexity 3 68 0 4426 95 24 8 chr9 87299055 87299679 -30562948 + MER41B LTR ERV1 1 634 -1 645 181 35 0 chr9 87300581 87300697 -30561930 + MER45A DNA AcHobo 58 177 -1 393 353 28 24 chr9 87301218 87301467 -30561160 + L3 LINE CR1 1320 1569 -8 216 0 0 0 chr9 87301521 87301545 -30561082 + (T)n Simple_repeat Simple_repeat 1 24 0 212 158 0 0 chr9 87301699 87301737 -30560890 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 601 330 27 0 chr9 87302090 87302314 -30560313 + MIR SINE MIR 20 249 -13 191 264 0 0 chr9 87302452 87302505 -30560122 + L3 LINE CR1 1525 1577 0 286 255 102 83 chr9 87303760 87303917 -30558710 - MLT1I LTR MaLR -2 407 248 504 247 71 86 chr9 87304000 87304255 -30558372 + MLT1F-int LTR MaLR 1107 1357 -14 1591 246 88 11 chr9 87304267 87304701 -30557926 + MLT1F LTR MaLR 1 467 -75 256 346 133 21 chr9 87304729 87304963 -30557664 + L2 LINE L2 2557 2816 -498 824 307 101 19 chr9 87305362 87305727 -30556900 + LTR16C LTR ERVL 85 479 -12 346 273 0 10 chr9 87305742 87305841 -30556786 - MIR SINE MIR -12 250 153 264 264 35 0 chr9 87305838 87305925 -30556702 + MIR SINE MIR 128 217 -45 * 195 271 100 14 chr9 87305992 87306062 -30556565 - MIR SINE MIR -159 103 28 196 338 39 0 chr9 87306095 87306172 -30556455 + L2 LINE L2 3178 3257 -56 353 287 93 13 chr9 87306402 87306552 -30556075 + MIR SINE MIR 2 163 -99 2068 201 98 40 chr9 87306553 87307051 -30555576 - MLT1F LTR MaLR -2 540 14 403 277 67 41 chr9 87307367 87307562 -30555065 - MIR SINE MIR -60 202 3 305 227 23 0 chr9 87308323 87308411 -30554216 - MIR SINE MIR -99 163 74 400 289 111 47 chr9 87308734 87309159 -30553468 + HAL1 LINE L1 1218 1669 -838 1858 159 10 0 chr9 87309750 87310046 -30552581 - AluSx SINE Alu 0 312 14 225 0 0 0 chr9 87311190 87311215 -30551412 + (T)n Simple_repeat Simple_repeat 1 25 0 321 339 0 15 chr9 87311913 87312043 -30550584 + MIR SINE MIR 81 208 -54 297 338 49 16 chr9 87312304 87312612 -30550015 - L1M4 LINE L1 -2034 4112 3795 246 161 19 0 chr9 87313037 87313096 -30549531 - L1M4c LINE L1 -3960 2580 2521 2281 99 10 0 chr9 87313644 87313937 -30548690 + AluY SINE Alu 1 296 -15 451 270 40 8 chr9 87315055 87315181 -30547446 + MIR SINE MIR 84 213 -49 387 304 38 116 chr9 87317808 87318232 -30544395 - L2 LINE L2 -11 3261 2871 472 280 11 28 chr9 87319631 87319813 -30542814 + MER20B DNA MER1_type 1 179 -604 268 258 23 8 chr9 87320431 87320559 -30542068 + (TA)n Simple_repeat Simple_repeat 1 130 0 36 62 0 0 chr9 87320658 87320722 -30541905 + AT_rich Low_complexity Low_complexity 1 64 0 205 405 45 0 chr9 87320732 87320821 -30541806 + L2 LINE L2 3137 3229 -43 2096 75 0 29 chr9 87321272 87321552 -30541075 + AluY SINE Alu 26 297 -14 634 87 10 29 chr9 87321657 87321760 -30540867 + L1PA10 LINE L1 6067 6167 -1 291 247 134 25 chr9 87323097 87323235 -30539392 - MIR SINE MIR -65 143 4 254 343 65 0 chr9 87324574 87324682 -30537945 + L2 LINE L2 2565 2679 -635 763 235 31 0 chr9 87324749 87324945 -30537682 + MER3 DNA MER1_type 2 203 -6 180 135 0 0 chr9 87325017 87325054 -30537573 + (TGAA)n Simple_repeat Simple_repeat 2 38 0 267 374 136 0 chr9 87325467 87325614 -30537013 + L2 LINE L2 3103 3269 -3 399 323 81 12 chr9 87326125 87326286 -30536341 - MIR SINE MIR -59 203 32 372 278 67 46 chr9 87326393 87326534 -30536093 - MIR3 SINE MIR -10 198 50 1777 158 6 65 chr9 87326534 87326857 -30535770 - AluJo SINE Alu -5 307 4 372 278 67 46 chr9 87326857 87326909 -30535718 - MIR3 SINE MIR -158 50 1 359 293 84 24 chr9 87327012 87327179 -30535448 + L1ME LINE L1 5552 5728 -393 299 293 66 9 chr9 87327219 87327325 -30535302 + MIR SINE MIR 138 249 -13 195 300 200 8 chr9 87327879 87327999 -30534628 + MIR SINE MIR 100 242 -20 1951 149 147 18 chr9 87328434 87328816 -30533811 + Tigger2a DNA MER2_type 4 434 0 378 145 43 8 chr9 87329555 87329815 -30532812 + (TA)n Simple_repeat Simple_repeat 1 269 0 235 311 118 17 chr9 87330224 87330343 -30532284 + L2 LINE L2 3142 3272 0 2238 95 27 0 chr9 87330743 87331038 -30531589 + AluSp SINE Alu 1 303 -10 186 71 0 0 chr9 87331604 87331632 -30530995 + (T)n Simple_repeat Simple_repeat 1 28 0 196 323 62 0 chr9 87332718 87332783 -30529844 - L2 LINE L2 -18 3254 3186 240 325 42 17 chr9 87333161 87333281 -30529346 - L2 LINE L2 -162 3110 2988 480 279 70 0 chr9 87333992 87334150 -30528477 - MIR3 SINE MIR -31 177 9 1924 173 0 0 chr9 87334760 87335067 -30527560 + AluJo SINE Alu 1 307 -5 185 322 59 59 chr9 87335291 87335409 -30527218 - L2 LINE L2 -599 2715 2598 488 316 57 41 chr9 87335426 87335670 -30526957 + MIR SINE MIR 1 248 -14 1976 181 18 87 chr9 87335925 87336056 -30526571 - LTR32 LTR ERVL 0 471 333 3507 131 49 47 chr9 87336056 87336689 -30525938 + MER51A LTR ERV1 1 634 0 1976 181 18 87 chr9 87336689 87337054 -30525573 - LTR32 LTR ERVL -138 333 9 308 350 102 21 chr9 87337938 87338124 -30524503 + MIR SINE MIR 49 249 -13 226 200 22 0 chr9 87339128 87339173 -30523454 + (TAA)n Simple_repeat Simple_repeat 2 47 0 227 206 112 103 chr9 87339379 87339486 -30523141 - MIR SINE MIR -132 130 23 339 113 0 42 chr9 87340275 87340327 -30522300 - MADE1 DNA Mariner 0 80 30 2381 77 0 0 chr9 87340327 87340625 -30522002 + AluSx SINE Alu 1 298 -14 339 113 0 42 chr9 87340625 87340643 -30521984 - MADE1 DNA Mariner -50 30 13 301 77 0 39 chr9 87340800 87340852 -30521775 - MADE1 DNA Mariner -30 50 1 247 369 74 8 chr9 87341168 87341290 -30521337 - L2 LINE L2 -1 3271 3142 268 304 29 0 chr9 87341329 87341398 -30521229 + L2 LINE L2 2983 3053 -219 220 259 0 69 chr9 87341629 87341687 -30520940 + L2 LINE L2 3228 3281 -32 1907 173 6 13 chr9 87341743 87342055 -30520572 + AluSx SINE Alu 1 310 -2 2440 58 0 0 chr9 87342093 87342386 -30520241 + AluY SINE Alu 1 293 -18 2166 266 120 57 chr9 87342445 87344679 -30517948 + HAL1 LINE L1 1 2391 -116 22 35 0 0 chr9 87344723 87344752 -30517875 + AT_rich Low_complexity Low_complexity 1 29 0 361 259 179 6 chr9 87345376 87345538 -30517089 - MIR SINE MIR -64 198 9 362 233 30 53 chr9 87345886 87346019 -30516608 - MER63A DNA MER1_type 0 210 81 294 304 130 0 chr9 87349764 87349879 -30512748 + MIR SINE MIR 127 256 -6 358 307 63 8 chr9 87349960 87350087 -30512540 + MIR3 SINE MIR 13 146 -62 940 261 83 31 chr9 87350650 87350999 -30511628 - MLT1J2 LTR MaLR -83 367 1 215 286 0 57 chr9 87351299 87351369 -30511258 - L2 LINE L2 -8 3264 3199 273 339 86 40 chr9 87351453 87351627 -30511000 - L2 LINE L2 -239 3033 2852 200 346 85 63 chr9 87352714 87353032 -30509595 - L2 LINE L2 -337 2977 2653 183 326 22 43 chr9 87353037 87353129 -30509498 - L2 LINE L2 -40 3232 3143 541 322 34 34 chr9 87353477 87353622 -30509005 + MIR SINE MIR 16 163 -99 1971 158 39 0 chr9 87353622 87353957 -30508670 - MER7A DNA MER2_type 0 346 1 541 322 34 34 chr9 87353957 87354050 -30508577 + MIR SINE MIR 162 254 -8 423 0 0 0 chr9 87354052 87354099 -30508528 + (CAT)n Simple_repeat Simple_repeat 2 48 0 332 241 44 28 chr9 87354778 87354992 -30507635 - MLT1J2 LTR MaLR -74 376 101 181 336 57 49 chr9 87355528 87355650 -30506977 + L2 LINE L2 3146 3268 -4 761 266 0 0 chr9 87355723 87355896 -30506731 + FAM SINE Alu 1 173 -2 499 341 120 42 chr9 87357821 87358766 -30503861 + L1ME4a LINE L1 4031 5048 -1098 317 105 18 18 chr9 87358807 87358864 -30503763 - L1PA16 LINE L1 -7 6159 6103 220 234 0 0 chr9 87359040 87359087 -30503540 + (TA)n Simple_repeat Simple_repeat 2 48 0 195 389 93 14 chr9 87359160 87359376 -30503251 - MIR SINE MIR -25 237 5 476 261 66 32 chr9 87359478 87359552 -30503075 + L1ME4a LINE L1 5436 5506 -615 2695 145 4 13 chr9 87359552 87360006 -30502621 + L1PA16 LINE L1 5717 6166 0 476 261 66 32 chr9 87360006 87360208 -30502419 + L1ME4a LINE L1 5506 5719 -402 1857 179 106 54 chr9 87360266 87360438 -30502189 + MLT1D LTR MaLR 1 163 -342 2308 116 0 0 chr9 87360438 87360741 -30501886 - AluSx SINE Alu -9 303 1 1857 179 106 54 chr9 87360741 87361048 -30501579 + MLT1D LTR MaLR 163 505 0 321 179 143 27 chr9 87362464 87362576 -30500051 + L1ME4a LINE L1 5962 6086 -35 219 170 0 0 chr9 87363993 87364040 -30498587 + (CA)n Simple_repeat Simple_repeat 2 48 0 345 314 39 13 chr9 87365518 87365674 -30496953 + L2 LINE L2 2231 2390 -924 286 122 0 0 chr9 87365720 87365761 -30496866 + Tigger5 DNA MER2_type 2277 2317 -6 403 182 0 13 chr9 87365763 87365840 -30496787 - Tigger5 DNA MER2_type -2244 79 4 955 236 0 5 chr9 87365857 87366060 -30496567 - MER58A DNA MER1_type -6 218 17 217 342 8 34 chr9 87366105 87366222 -30496405 + L2 LINE L2 2426 2539 -775 219 395 37 9 chr9 87366371 87366480 -30496147 - L2 LINE L2 -5 3267 3156 371 164 57 14 chr9 87367073 87367213 -30495414 + (TA)n Simple_repeat Simple_repeat 1 146 0 257 156 46 29 chr9 87367224 87367397 -30495230 + (TA)n Simple_repeat Simple_repeat 2 177 0 185 328 146 21 chr9 87367434 87367626 -30495001 + L3 LINE CR1 1332 1547 -30 191 347 56 0 chr9 87367927 87367999 -30494628 + MIR SINE MIR 29 104 -158 642 305 79 27 chr9 87368051 87368379 -30494248 + MLT1I LTR MaLR 63 407 -2 450 286 36 7 chr9 87368398 87368538 -30494089 + MIR SINE MIR 119 262 0 251 253 44 22 chr9 87368785 87368876 -30493751 + MIR3 SINE MIR 110 202 -6 447 291 58 71 chr9 87369460 87369824 -30492803 + L1ME4a LINE L1 5530 5888 -233 377 343 78 34 chr9 87370757 87370961 -30491666 + MIR SINE MIR 50 262 0 28 0 0 0 chr9 87372056 87372084 -30490543 + AT_rich Low_complexity Low_complexity 1 28 0 429 180 0 0 chr9 87372096 87372185 -30490442 + (TG)n Simple_repeat Simple_repeat 2 90 0 313 277 133 24 chr9 87376230 87376448 -30486179 - MIR SINE MIR -6 256 1 342 357 13 13 chr9 87377442 87377596 -30485031 - L2 LINE L2 -219 3053 2900 2052 78 0 0 chr9 87378437 87378693 -30483934 + AluY SINE Alu 1 256 -55 395 281 78 8 chr9 87379707 87379835 -30482792 - L2 LINE L2 -3 3310 3174 185 362 35 0 chr9 87382163 87382221 -30480406 - MIR SINE MIR -105 103 44 331 339 34 60 chr9 87382755 87382988 -30479639 - MIR SINE MIR -13 249 23 1046 185 113 7 chr9 87383170 87383224 -30479403 + MER5C DNA MER1_type 2 49 -275 2497 123 11 19 chr9 87383224 87383591 -30479036 + THE1B LTR MaLR 1 364 0 1046 185 113 7 chr9 87383591 87383828 -30478799 + MER5C DNA MER1_type 49 324 0 446 323 0 8 chr9 87383993 87384117 -30478510 + MIR SINE MIR 18 140 -122 1519 181 18 25 chr9 87384128 87384405 -30478222 + L1MB4 LINE L1 5409 5683 -497 532 176 0 0 chr9 87384410 87384495 -30478132 + MER47A DNA MER2_type 29 113 -253 1598 128 37 0 chr9 87384658 87384901 -30477726 + MER47A DNA MER2_type 115 366 0 2510 175 28 8 chr9 87384904 87385372 -30477255 + L1MB4 LINE L1 5685 6161 -19 207 0 0 0 chr9 87385393 87385416 -30477211 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 189 111 22 89 chr9 87385456 87385501 -30477126 + MIR SINE MIR 151 192 -70 24 0 0 0 chr9 87385549 87385573 -30477054 + AT_rich Low_complexity Low_complexity 1 24 0 6251 162 14 6 chr9 87385617 87387625 -30475002 - L1PB1 LINE L1 -1 6150 4123 184 337 36 0 chr9 87387825 87387908 -30474719 + MIR3 SINE MIR 118 203 -5 736 102 94 8 chr9 87388877 87389005 -30473622 - L1MB2 LINE L1 -8 6163 6025 234 324 42 0 chr9 87389006 87389077 -30473550 - MER2 DNA MER2_type -1 344 271 24 32 0 0 chr9 87389077 87389108 -30473519 + AT_rich Low_complexity Low_complexity 1 31 0 442 148 0 0 chr9 87389120 87389201 -30473426 - MER2 DNA MER2_type -138 207 127 2233 79 26 26 chr9 87389301 87389483 -30473144 - AluY SINE Alu -7 304 120 195 69 0 0 chr9 87389483 87389512 -30473115 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2233 79 26 26 chr9 87389512 87389633 -30472994 - AluY SINE Alu -190 121 1 2288 164 5 5 chr9 87389633 87390017 -30472610 - L1MB2 LINE L1 -339 5832 5449 203 246 18 18 chr9 87390065 87390122 -30472505 + L2 LINE L2 3215 3271 -1 258 344 11 11 chr9 87390148 87390241 -30472386 + MIR3 SINE MIR 87 179 -29 234 0 0 0 chr9 87390485 87390511 -30472116 + (T)n Simple_repeat Simple_repeat 1 26 0 34 24 0 0 chr9 87390558 87390599 -30472028 + AT_rich Low_complexity Low_complexity 1 41 0 1856 247 44 25 chr9 87390603 87390915 -30471712 - L1ME3 LINE L1 -43 6119 5790 2101 170 2 78 chr9 87390915 87391310 -30471317 - MLT1A1 LTR MaLR 0 365 1 1856 247 44 25 chr9 87391310 87391563 -30471064 - L1ME3 LINE L1 -372 5790 5543 271 264 0 0 chr9 87391581 87391668 -30470959 + (TA)n Simple_repeat Simple_repeat 2 88 0 243 260 177 70 chr9 87391708 87392035 -30470592 + L1ME4a LINE L1 5675 6036 -85 246 254 0 14 chr9 87392282 87392353 -30470274 + L1ME4a LINE L1 6052 6121 0 1357 193 54 37 chr9 87393796 87394092 -30468535 + MLT2B3 LTR ERVL 254 554 0 300 228 213 37 chr9 87394475 87394611 -30468016 - L2 LINE L2 -481 2833 2674 935 252 5 5 chr9 87394629 87394835 -30467792 + MER58A DNA MER1_type 19 224 0 237 331 148 33 chr9 87394910 87395336 -30467291 - L2 LINE L2 -752 2562 2088 24 0 0 0 chr9 87395678 87395702 -30466925 + AT_rich Low_complexity Low_complexity 1 24 0 199 131 10 71 chr9 87395835 87395934 -30466693 + (TA)n Simple_repeat Simple_repeat 2 94 0 206 343 56 9 chr9 87395969 87396077 -30466550 - MIR3 SINE MIR -81 127 15 1560 196 55 42 chr9 87397096 87397478 -30465149 - MLT1C LTR MaLR -5 462 76 4078 186 39 3 chr9 87397478 87398176 -30464451 - MER44D DNA MER2_type 0 605 11 247 307 27 0 chr9 87398202 87398277 -30464350 - MLT1C LTR MaLR -390 77 1 1919 207 41 62 chr9 87399361 87399694 -30462933 - MLT1D LTR MaLR 0 505 185 2241 102 10 19 chr9 87399694 87400008 -30462619 - AluSq SINE Alu -2 311 1 1919 207 41 62 chr9 87400008 87400190 -30462437 - MLT1D LTR MaLR -320 185 1 377 283 0 18 chr9 87400377 87400490 -30462137 + MIR SINE MIR 150 260 -2 294 273 196 14 chr9 87401618 87401761 -30460866 - MIR3 SINE MIR -37 171 3 276 124 10 175 chr9 87401800 87401897 -30460730 - MER53 DNA DNA 0 189 109 245 143 0 20 chr9 87401910 87401959 -30460668 + (TA)n Simple_repeat Simple_repeat 1 48 0 261 136 45 45 chr9 87402042 87402108 -30460519 + MER53 DNA DNA 81 146 -43 245 267 116 93 chr9 87402652 87402824 -30459803 + MIR SINE MIR 70 245 -17 354 256 9 166 chr9 87403627 87403793 -30458834 - MER5B DNA MER1_type 0 178 50 2198 106 10 0 chr9 87403793 87404086 -30458541 - AluSq SINE Alu -17 296 1 354 256 9 166 chr9 87404086 87404130 -30458497 - MER5B DNA MER1_type -128 50 1 1275 281 131 36 chr9 87404165 87405034 -30457593 - L2 LINE L2 -541 2773 1822 882 229 15 10 chr9 87405203 87405404 -30457223 + MIR SINE MIR 8 209 -53 2331 119 0 0 chr9 87405423 87405735 -30456892 + AluSx SINE Alu 1 312 0 240 328 108 32 chr9 87405743 87405929 -30456698 - MIR3 SINE MIR -6 202 3 243 0 0 0 chr9 87406038 87406065 -30456562 + (T)n Simple_repeat Simple_repeat 1 27 0 212 316 134 21 chr9 87406500 87406687 -30455940 + L2 LINE L2 2845 3052 -220 193 394 38 30 chr9 87406783 87406915 -30455712 + L2 LINE L2 3102 3234 -38 261 109 0 0 chr9 87407492 87407538 -30455089 + (CA)n Simple_repeat Simple_repeat 2 47 0 532 328 121 41 chr9 87407651 87408224 -30454403 + L2 LINE L2 2645 3311 -2 325 358 8 0 chr9 87408636 87408756 -30453871 + L2 LINE L2 2940 3060 -212 25 0 0 0 chr9 87408826 87408851 -30453776 + AT_rich Low_complexity Low_complexity 1 25 0 181 383 99 28 chr9 87408851 87408992 -30453635 + L2 LINE L2 3122 3272 0 856 275 67 4 chr9 87409147 87409387 -30453240 + MER46C DNA MER2_type 82 336 -2 1837 155 3 23 chr9 87409634 87409938 -30452689 - AluJb SINE Alu -14 298 1 246 242 182 0 chr9 87410011 87410077 -30452550 + MIR SINE MIR 73 150 -112 238 290 148 23 chr9 87410157 87410333 -30452294 - L2 LINE L2 -900 2414 2217 287 325 79 0 chr9 87410803 87410917 -30451710 - MIR3 SINE MIR -13 195 73 21107 153 30 9 chr9 87411559 87419000 -30443627 + L1MA1 LINE L1 14 7616 -105 2930 69 121 0 chr9 87419324 87419728 -30442899 - MLT2A2 LTR ERVL 0 453 1 1561 186 0 50 chr9 87420044 87420345 -30442282 + AluJo SINE Alu 1 286 -26 294 143 0 0 chr9 87420345 87420394 -30442233 + (TATATG)n Simple_repeat Simple_repeat 2 50 0 2023 133 30 10 chr9 87422317 87422618 -30440009 - AluSx SINE Alu -5 307 1 488 136 93 59 chr9 87422645 87422763 -30439864 + MIR SINE MIR 64 185 -77 200 97 32 0 chr9 87422763 87422794 -30439833 + (TG)n Simple_repeat Simple_repeat 2 33 0 338 349 50 10 chr9 87422942 87423140 -30439487 + MIR SINE MIR 21 226 -36 222 280 327 6 chr9 87423127 87423295 -30439332 + MIR SINE MIR 23 244 -18 * 316 299 12 72 chr9 87424113 87424280 -30438347 + L1ME LINE L1 5625 5781 -340 222 62 0 0 chr9 87424294 87424326 -30438301 + (A)n Simple_repeat Simple_repeat 1 32 0 2224 85 4 0 chr9 87424326 87424607 -30438020 - AluSp SINE Alu -31 282 1 189 0 0 0 chr9 87424820 87424841 -30437786 + (GTTTG)n Simple_repeat Simple_repeat 5 25 0 369 0 0 0 chr9 87424843 87424884 -30437743 + (TG)n Simple_repeat Simple_repeat 1 41 0 1091 151 9 76 chr9 87427676 87427901 -30434726 + AluJb SINE Alu 87 296 -16 207 0 0 0 chr9 87427936 87427959 -30434668 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 891 262 22 55 chr9 87428045 87428102 -30434525 - L1ME1 LINE L1 -5 6161 6104 2352 86 0 13 chr9 87428102 87428415 -30434212 + AluY SINE Alu 1 309 -2 891 262 22 55 chr9 87428415 87428720 -30433907 - L1ME1 LINE L1 -62 6104 5811 274 189 38 0 chr9 87429153 87429206 -30433421 - MIR SINE MIR -72 136 82 692 177 33 107 chr9 87429424 87429583 -30433044 + MER105 DNA DNA 1 141 -63 1942 138 24 0 chr9 87429583 87429880 -30432747 - AluJb SINE Alu -8 304 1 692 177 33 107 chr9 87429880 87429935 -30432692 + MER105 DNA DNA 141 199 -5 278 231 77 29 chr9 87430043 87430147 -30432480 + MIR SINE MIR 104 212 -50 640 292 22 45 chr9 87430506 87430684 -30431943 + MER91A DNA MER1_type 1 174 -22 816 164 0 0 chr9 87430811 87430927 -30431700 + FLAM_C SINE Alu 1 116 -27 183 42 0 0 chr9 87430927 87430951 -30431676 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 432 156 16 125 chr9 87431021 87431149 -30431478 - MER63 DNA MER1_type -85 751 12 403 307 34 50 chr9 87431227 87431406 -30431221 - MIR SINE MIR -81 181 6 195 250 36 71 chr9 87432002 87432058 -30430569 + MIR SINE MIR 23 76 -186 265 324 65 9 chr9 87432115 87432223 -30430404 - MIR SINE MIR -48 214 101 6077 91 16 18 chr9 87432223 87433273 -30429354 + L1PA13 LINE L1 5111 6157 -6 21 0 0 0 chr9 87433274 87433295 -30429332 + AT_rich Low_complexity Low_complexity 1 21 0 1657 206 86 44 chr9 87433328 87433871 -30428756 + MLT1F1 LTR MaLR 3 567 0 240 267 40 13 chr9 87433954 87434029 -30428598 + MIR SINE MIR 74 150 -112 334 337 62 22 chr9 87434243 87434421 -30428206 + MIR SINE MIR 78 262 0 1794 152 45 0 chr9 87434634 87434923 -30427704 - AluSx SINE Alu -10 302 1 248 360 0 0 chr9 87435172 87435247 -30427380 + L2 LINE L2 3225 3299 -14 290 296 12 0 chr9 87436083 87436164 -30426463 + MIR SINE MIR 53 134 -74 2132 172 44 10 chr9 87436389 87436802 -30425825 + MSTB1 LTR MaLR 5 431 -1 428 331 161 20 chr9 87437236 87437924 -30424703 + L2 LINE L2 2075 2859 -455 398 362 46 0 chr9 87438236 87438410 -30424217 + MIR SINE MIR 18 199 -63 345 323 0 0 chr9 87438399 87438492 -30424135 - L2 LINE L2 -290 3023 2931 * 345 24 0 0 chr9 87440545 87440587 -30422040 + (TG)n Simple_repeat Simple_repeat 2 43 0 514 278 11 5 chr9 87442205 87442396 -30420231 + L1PB1 LINE L1 6 197 -6666 * 13590 191 14 20 chr9 87442393 87444747 -30417880 + L1PB1 LINE L1 1392 3759 -3108 2365 93 0 13 chr9 87444747 87445059 -30417568 + AluSc SINE Alu 1 308 -1 13590 191 14 20 chr9 87445059 87445770 -30416857 + L1PB1 LINE L1 3759 4473 -2394 2248 98 3 0 chr9 87445770 87446065 -30416562 + AluY SINE Alu 1 296 -15 13590 191 14 20 chr9 87446065 87448454 -30414173 + L1PB1 LINE L1 4473 6867 0 27 29 0 0 chr9 87448454 87448488 -30414139 + AT_rich Low_complexity Low_complexity 1 34 0 221 283 0 17 chr9 87449055 87449115 -30413512 - MIR3 SINE MIR -11 197 139 4832 152 39 42 chr9 87449116 87450440 -30412187 + L1MA9 LINE L1 4992 6310 -2 855 275 103 64 chr9 87450606 87451170 -30411457 + MLT1L LTR MaLR 6 591 -24 182 413 43 0 chr9 87451258 87451350 -30411277 + L2 LINE L2 3163 3258 -14 2656 240 19 16 chr9 87451502 87452203 -30410424 + MER97b DNA MER1_type? 1 703 -350 23 0 0 0 chr9 87452648 87452671 -30409956 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr9 87452814 87452846 -30409781 + AT_rich Low_complexity Low_complexity 1 32 0 673 230 76 28 chr9 87452989 87453280 -30409347 + MER97c DNA MER1_type? 785 1089 -1 185 312 169 26 chr9 87454324 87454478 -30408149 - MIR SINE MIR -48 214 39 777 272 65 9 chr9 87455172 87455404 -30407223 - MLT1J1 LTR MaLR -166 280 36 23 0 0 0 chr9 87455770 87455793 -30406834 + AT_rich Low_complexity Low_complexity 1 23 0 238 192 13 39 chr9 87455853 87455931 -30406696 + CT-rich Low_complexity Low_complexity 3 78 0 304 265 175 16 chr9 87456207 87456396 -30406231 - L1ME LINE L1 -503 5618 5400 21 0 0 0 chr9 87456533 87456554 -30406073 + AT_rich Low_complexity Low_complexity 1 21 0 425 330 119 16 chr9 87456554 87457048 -30405579 - L1ME LINE L1 -1542 4604 4060 192 322 27 128 chr9 87457831 87458089 -30404538 + L2 LINE L2 3021 3252 -20 186 43 0 0 chr9 87458096 87458119 -30404508 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 345 305 179 5 chr9 87458179 87458402 -30404225 - MIR SINE MIR 0 262 1 252 261 43 35 chr9 87459224 87459339 -30403288 + MER117 DNA MER1_type 1 116 -81 24 67 0 0 chr9 87460998 87461043 -30401584 + AT_rich Low_complexity Low_complexity 1 45 0 29 0 0 0 chr9 87461509 87461538 -30401089 + AT_rich Low_complexity Low_complexity 1 29 0 756 180 35 39 chr9 87461662 87461883 -30400744 - MLT1C LTR MaLR -141 249 39 358 365 19 28 chr9 87462735 87462946 -30399681 - L1ME LINE L1 -2310 3836 3628 3214 198 21 23 chr9 87462997 87464159 -30398468 - L1MC1 LINE L1 -669 5664 4503 3797 146 40 6 chr9 87464160 87464811 -30397816 + L1MC1 LINE L1 5643 6315 -18 21 57 0 0 chr9 87464849 87464884 -30397743 + AT_rich Low_complexity Low_complexity 1 35 0 266 355 83 16 chr9 87465443 87465564 -30397063 - MIR3 SINE MIR -67 141 13 336 48 0 0 chr9 87466330 87466372 -30396255 + (TG)n Simple_repeat Simple_repeat 2 43 0 749 204 22 0 chr9 87466382 87466519 -30396108 - FRAM SINE Alu -36 140 1 299 298 99 0 chr9 87466620 87466751 -30395876 + MIR SINE MIR 106 249 -13 514 337 50 10 chr9 87467593 87467795 -30394832 - MIR SINE MIR -52 210 1 214 171 43 43 chr9 87467892 87467962 -30394665 + (TATATG)n Simple_repeat Simple_repeat 3 72 0 32 0 0 0 chr9 87468154 87468186 -30394441 + AT_rich Low_complexity Low_complexity 1 32 0 243 156 0 0 chr9 87468207 87468252 -30394375 - LTR66 LTR ERVL -172 438 394 288 224 0 0 chr9 87468252 87468274 -30394353 + (TA)n Simple_repeat Simple_repeat 2 68 0 2114 138 0 0 chr9 87468287 87468583 -30394044 - AluSx SINE Alu -16 296 1 1278 142 9 28 chr9 87468613 87468831 -30393796 + AluSg/x SINE Alu 99 312 0 748 225 112 5 chr9 87469129 87469316 -30393311 + MER58 DNA MER1_type 1 207 -134 185 336 72 32 chr9 87469387 87469512 -30393115 + MIR3 SINE MIR 10 139 -69 421 178 66 79 chr9 87469792 87469944 -30392683 - MER69 DNA AcHobo -34 2492 2343 324 260 70 20 chr9 87469923 87470023 -30392604 - MER69A DNA AcHobo -72 105 1 * 1115 329 37 28 chr9 87470407 87470975 -30391652 + ERVL LTR ERVL 4476 5048 -716 299 249 82 56 chr9 87471036 87471252 -30391375 - L1MEd LINE L1 -4806 1323 1111 288 331 24 8 chr9 87471255 87471379 -30391248 - L1MEd LINE L1 -5538 581 456 280 286 41 10 chr9 87471925 87472023 -30390604 + MIR SINE MIR 97 197 -65 399 277 68 137 chr9 87472613 87472905 -30389722 + L2 LINE L2 2997 3268 -4 194 271 14 29 chr9 87473161 87473231 -30389396 - MIR3 SINE MIR -2 206 138 339 125 0 0 chr9 87473337 87473393 -30389234 + Alu SINE Alu 242 297 -5 317 368 9 0 chr9 87473394 87473508 -30389119 + L2 LINE L2 3197 3311 -2 291 114 0 0 chr9 87473511 87473555 -30389072 + (TGGA)n Simple_repeat Simple_repeat 3 46 0 183 100 0 0 chr9 87473555 87473585 -30389042 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 378 282 15 38 chr9 87473932 87474063 -30388564 - L2 LINE L2 -3 3269 3142 451 298 17 45 chr9 87474545 87474723 -30387904 + MIR3 SINE MIR 30 202 -6 265 214 11 11 chr9 87475049 87475138 -30387489 + (TG)n Simple_repeat Simple_repeat 2 90 0 195 323 46 0 chr9 87475572 87475637 -30386990 + MIR SINE MIR 86 153 -55 2164 125 0 0 chr9 87476852 87477148 -30385479 + AluSx SINE Alu 1 296 -16 286 239 171 40 chr9 87477402 87477578 -30385049 + L2 LINE L2 2776 2974 -340 1982 79 26 0 chr9 87479070 87479335 -30383292 + THE1A-int LTR MaLR 1309 1580 0 2457 106 29 9 chr9 87479335 87479683 -30382944 + THE1A LTR MaLR 1 355 0 289 326 11 0 chr9 87480199 87480288 -30382339 + (TG)n Simple_repeat Simple_repeat 2 91 0 398 218 161 46 chr9 87480610 87480784 -30381843 + L2 LINE L2 3120 3313 0 502 246 30 20 chr9 87480977 87481117 -30381510 - MER5B DNA MER1_type -34 155 2 290 343 48 70 chr9 87481157 87481428 -30381199 - L2 LINE L2 -93 3179 2915 971 157 15 66 chr9 87481692 87481889 -30380738 + MER5A DNA MER1_type 2 188 -1 318 198 0 141 chr9 87483475 87483596 -30379031 - MIR3 SINE MIR -102 106 3 264 320 159 55 chr9 87484845 87485210 -30377417 - L3 LINE CR1 -156 1421 1019 540 231 79 44 chr9 87485250 87485453 -30377174 - MER63A DNA MER1_type 0 210 1 180 0 0 0 chr9 87485754 87485774 -30376853 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 186 320 40 40 chr9 87485927 87486052 -30376575 + MIR3 SINE MIR 45 169 -39 709 232 72 5 chr9 87486787 87486981 -30375646 + L2 LINE L2 3107 3313 0 3366 191 29 23 chr9 87486984 87487632 -30374995 - MER82 DNA MER2_type 0 653 2 374 263 74 34 chr9 87487680 87487855 -30374772 + MIR SINE MIR 70 251 -11 357 300 100 28 chr9 87488269 87488449 -30374178 - MIR3 SINE MIR -15 193 1 318 50 0 0 chr9 87489312 87489352 -30373275 + (GGGA)n Simple_repeat Simple_repeat 4 43 0 201 108 0 0 chr9 87490737 87490774 -30371853 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 390 304 52 31 chr9 87491077 87491271 -30371356 - MIR SINE MIR -48 214 17 227 312 80 14 chr9 87491351 87491489 -30371138 + L2 LINE L2 2171 2317 -997 1325 270 89 50 chr9 87491491 87492442 -30370185 - L2 LINE L2 0 3313 2343 303 49 0 0 chr9 87492491 87492532 -30370095 + (CA)n Simple_repeat Simple_repeat 1 41 0 184 410 10 45 chr9 87492958 87493158 -30369469 - L2 LINE L2 -463 2851 2659 761 294 18 10 chr9 87493275 87493521 -30369106 - MIR SINE MIR -13 249 3 281 350 32 16 chr9 87493904 87494027 -30368600 - L2 LINE L2 0 3272 3148 271 239 110 37 chr9 87494123 87494232 -30368395 + MIR SINE MIR 37 153 -55 21 0 0 0 chr9 87494817 87494838 -30367789 + AT_rich Low_complexity Low_complexity 1 21 0 397 284 20 25 chr9 87494920 87495086 -30367541 - MIR SINE MIR -6 256 94 604 260 6 47 chr9 87495317 87495486 -30367141 + LTR33 LTR ERVL 67 228 -293 445 331 17 12 chr9 87495564 87495736 -30366891 + LTR33 LTR ERVL 349 521 0 240 377 58 7 chr9 87496947 87497101 -30365526 + MIR SINE MIR 70 231 -31 485 358 44 58 chr9 87497497 87497686 -30364941 - L2 LINE L2 0 3272 3082 988 211 6 6 chr9 87497686 87497861 -30364766 + MER96 DNA MER1_type 1 175 0 485 358 44 58 chr9 87497861 87498121 -30364506 - L2 LINE L2 -190 3082 2829 4005 162 88 12 chr9 87498691 87499169 -30363458 - MER72 LTR ERV1 0 722 177 1808 104 54 0 chr9 87499169 87499428 -30363199 + AluSg SINE Alu 29 301 -9 4005 162 88 12 chr9 87499428 87499620 -30363007 - MER72 LTR ERV1 -545 177 1 312 293 78 70 chr9 87499873 87500497 -30362130 - L1MC5 LINE L1 -57 7904 7276 244 276 46 11 chr9 87500573 87500660 -30361967 - MIR SINE MIR -119 143 54 241 217 0 0 chr9 87500988 87501034 -30361593 + L2 LINE L2 3267 3312 -1 676 333 48 71 chr9 87501058 87501590 -30361037 + L2 LINE L2 2483 2993 -279 2045 96 0 4 chr9 87501590 87501880 -30360747 - AluSg SINE Alu 0 311 23 676 333 48 71 chr9 87501880 87502154 -30360473 + L2 LINE L2 2993 3272 0 373 317 54 32 chr9 87502445 87502780 -30359847 - L2 LINE L2 -214 3058 2712 22 0 0 0 chr9 87503687 87503709 -30358918 + AT_rich Low_complexity Low_complexity 1 22 0 2027 145 39 15 chr9 87503741 87504072 -30358555 + MER44D DNA MER2_type 1 609 0 1068 243 124 119 chr9 87505392 87506021 -30356606 + MER45C DNA AcHobo 2 633 -320 238 204 19 19 chr9 87506016 87506070 -30356557 + MER45C DNA AcHobo 899 952 -1 * 542 233 9 35 chr9 87506520 87506636 -30355991 + MER81 DNA DNA 2 114 0 307 353 6 35 chr9 87506694 87506864 -30355763 - MIR SINE MIR -50 212 48 1720 146 8 0 chr9 87507403 87507663 -30354964 - AluJb SINE Alu -16 296 35 229 267 0 0 chr9 87507911 87507971 -30354656 - L2 LINE L2 -1 3312 3253 278 242 58 47 chr9 87508262 87508381 -30354246 - MIR SINE MIR -74 134 24 1174 194 184 50 chr9 87509374 87509750 -30352877 - MSTC LTR MaLR 0 428 3 217 347 42 11 chr9 87509907 87510002 -30352625 + MIR SINE MIR 13 110 -152 209 276 105 0 chr9 87510340 87510416 -30352211 - MIR3 SINE MIR -122 86 3 2375 196 65 6 chr9 87510517 87510992 -30351635 + MLT1D LTR MaLR 3 505 0 271 198 112 17 chr9 87511061 87511177 -30351450 + L1ME4a LINE L1 5790 5916 -205 231 190 63 51 chr9 87511252 87511331 -30351296 + L1ME4a LINE L1 6041 6120 -1 370 272 48 0 chr9 87511939 87512042 -30350585 - L2 LINE L2 -18 3295 3188 786 259 58 91 chr9 87512195 87512725 -30349902 + LTR33A LTR ERVL 1 513 -10 24 85 0 0 chr9 87513407 87513466 -30349161 + AT_rich Low_complexity Low_complexity 1 59 0 344 278 78 9 chr9 87514099 87514214 -30348413 - MIR3 SINE MIR -21 187 65 1345 207 61 116 chr9 87515048 87515541 -30347086 + MLT1B LTR MaLR 1 466 -1 316 250 42 10 chr9 87516398 87516494 -30346133 - MIR3 SINE MIR -27 181 83 192 40 0 0 chr9 87516708 87516733 -30345894 + (A)n Simple_repeat Simple_repeat 1 25 0 1953 120 10 23 chr9 87517136 87517436 -30345191 + AluSq SINE Alu 1 296 -17 253 243 73 7 chr9 87518155 87518291 -30344336 + L1ME2 LINE L1 4341 4485 -1661 426 247 0 0 chr9 87518306 87518379 -30344248 - AluJ/FLAM SINE Alu -239 73 1 2831 235 55 34 chr9 87518473 87520111 -30342516 + L1ME2 LINE L1 4489 6332 -2 2215 127 0 0 chr9 87520136 87520444 -30342183 + AluY SINE Alu 1 308 -3 422 285 171 1 chr9 87520766 87520960 -30341667 - MIR SINE MIR -35 227 5 419 266 37 0 chr9 87521510 87521619 -30341008 + MIR SINE MIR 57 169 -93 703 299 43 95 chr9 87522095 87522669 -30339958 + L2 LINE L2 2702 3259 -13 403 296 133 34 chr9 87523552 87523785 -30338842 + MIR SINE MIR 7 262 0 235 246 82 64 chr9 87523938 87524048 -30338579 - L2 LINE L2 -5 3308 3197 790 192 44 100 chr9 87524450 87524679 -30337948 - MER20 DNA MER1_type -3 216 1 180 0 0 0 chr9 87524876 87524896 -30337731 + (TC)n Simple_repeat Simple_repeat 1 20 0 515 305 75 0 chr9 87525140 87525327 -30337300 - MIR SINE MIR -51 211 11 3844 156 24 10 chr9 87525843 87526567 -30336060 - L1MA7 LINE L1 0 6291 5558 534 284 42 16 chr9 87526976 87527166 -30335461 - MIR SINE MIR -6 256 62 463 275 39 39 chr9 87527171 87527353 -30335274 - L2 LINE L2 0 3313 3132 272 282 74 27 chr9 87527413 87527562 -30335065 + MLT1I LTR MaLR 101 256 -153 254 185 15 31 chr9 87528175 87528240 -30334387 + T-rich Low_complexity Low_complexity 2 65 0 310 322 40 58 chr9 87528775 87528949 -30333678 - L2 LINE L2 -38 3234 3064 3404 139 8 19 chr9 87529127 87529660 -30332967 + MER1A DNA MER1_type 1 527 0 207 346 7 81 chr9 87529757 87529893 -30332734 - MIR SINE MIR -35 227 102 2793 93 3 3 chr9 87530876 87531251 -30331376 + THE1C LTR MaLR 1 375 0 22 35 0 0 chr9 87533053 87533082 -30329545 + AT_rich Low_complexity Low_complexity 1 29 0 351 303 91 0 chr9 87533220 87533352 -30329275 - MIR3 SINE MIR -64 144 1 326 376 17 8 chr9 87533567 87533684 -30328943 + MIR3 SINE MIR 10 127 -81 376 272 78 68 chr9 87535419 87535610 -30327017 - MIR SINE MIR -6 256 64 19220 170 29 10 chr9 87536369 87540408 -30322219 + L1MA1 LINE L1 19 4133 -3432 3929 166 4 0 chr9 87540411 87541145 -30321482 + L1MA1 LINE L1 5143 5879 -1686 * 5775 103 40 4 chr9 87541142 87542086 -30320541 + L1MA1 LINE L1 6736 7713 -8 24 32 0 0 chr9 87542086 87542117 -30320510 + AT_rich Low_complexity Low_complexity 1 31 0 273 259 9 27 chr9 87542288 87542400 -30320227 + HAL1 LINE L1 95 204 -2303 818 306 27 6 chr9 87542410 87542776 -30319851 + HAL1 LINE L1 1404 1777 -730 1496 153 11 11 chr9 87542786 87542979 -30319648 + L1MB1 LINE L1 5891 6086 -82 1710 125 119 32 chr9 87542979 87543324 -30319303 - THE1C LTR MaLR 0 375 1 1496 153 11 11 chr9 87543324 87543405 -30319222 + L1MB1 LINE L1 6085 6165 -3 965 279 88 14 chr9 87543497 87543916 -30318711 - LTR16A LTR ERVL 0 450 1 615 245 121 12 chr9 87543919 87544168 -30318459 + HAL1 LINE L1 1864 2139 -368 408 261 30 30 chr9 87544193 87544358 -30318269 + HAL1 LINE L1 2229 2393 -114 2301 69 21 0 chr9 87544661 87544951 -30317676 + AluY SINE Alu 1 296 -15 282 272 163 20 chr9 87545671 87545818 -30316809 + L2 LINE L2 3136 3303 -10 315 309 143 42 chr9 87546143 87546360 -30316267 - MIR SINE MIR -4 258 20 443 238 194 10 chr9 87549739 87549945 -30312682 + MLT1H LTR MaLR 1 244 -305 1546 211 87 51 chr9 87550815 87551516 -30311111 - Charlie7 DNA MER1_type -76 2536 1811 225 258 0 45 chr9 87551517 87551583 -30311044 - Charlie7 DNA MER1_type -2080 532 470 244 311 114 9 chr9 87551629 87551848 -30310779 - Charlie7 DNA MER1_type -2145 467 226 23 33 0 0 chr9 87552162 87552192 -30310435 + AT_rich Low_complexity Low_complexity 1 30 0 243 269 0 21 chr9 87552531 87552624 -30310003 + L1M4 LINE L1 2676 2766 -3380 234 242 74 0 chr9 87552864 87552959 -30309668 - L1ME4a LINE L1 -11 6110 6009 210 91 0 0 chr9 87552988 87553021 -30309606 + (CA)n Simple_repeat Simple_repeat 2 34 0 237 108 0 0 chr9 87553353 87553390 -30309237 + (TGG)n Simple_repeat Simple_repeat 1 37 0 677 184 0 0 chr9 87553499 87553608 -30309019 + FLAM_C SINE Alu 3 111 -32 228 191 0 0 chr9 87553644 87553686 -30308941 + Alu SINE Alu 70 111 -191 * 283 239 0 0 chr9 87553680 87553747 -30308880 + FLAM_A SINE Alu 66 132 -1 888 294 30 4 chr9 87553883 87554118 -30308509 + MIR SINE MIR 1 241 -21 323 293 27 41 chr9 87554314 87554461 -30308166 - L1M4 LINE L1 -1435 4711 4567 1332 244 14 3 chr9 87554557 87554909 -30307718 + L1PA16 LINE L1 3584 3939 -2207 5560 135 14 1 chr9 87554925 87556136 -30306491 + L1PA16 LINE L1 4929 6160 -6 328 338 35 41 chr9 87557426 87557571 -30305056 + MIR3 SINE MIR 40 183 -25 390 285 24 16 chr9 87559134 87559257 -30303370 + MIR SINE MIR 20 143 -119 239 335 82 71 chr9 87560738 87560828 -30301799 - L2 LINE L2 0 3272 3178 2299 68 7 46 chr9 87560828 87561135 -30301492 - AluY SINE Alu -16 295 1 239 335 82 71 chr9 87561135 87561214 -30301413 - L2 LINE L2 -94 3178 3101 333 228 33 11 chr9 87561420 87561512 -30301115 + LTR33 LTR ERVL 1 94 -427 274 330 71 0 chr9 87562122 87562234 -30300393 + L2 LINE L2 3133 3252 -20 230 318 0 0 chr9 87562591 87562654 -30299973 + GA-rich Low_complexity Low_complexity 2 64 0 432 270 27 0 chr9 87562686 87562797 -30299830 + L2 LINE L2 3197 3310 -3 422 275 40 13 chr9 87563005 87563154 -30299473 - MIR3 SINE MIR -19 189 37 252 341 138 21 chr9 87564118 87564408 -30298219 + L2 LINE L2 2594 2917 -397 1824 174 0 0 chr9 87564571 87564859 -30297768 + AluJb SINE Alu 6 293 -19 2564 30 7 3 chr9 87564949 87565252 -30297375 + AluY SINE Alu 1 304 -7 1247 133 207 113 chr9 87566053 87566444 -30296183 + MSTA LTR MaLR 1 428 0 1668 252 48 55 chr9 87566899 87567424 -30295203 + L1MEc LINE L1 597 1115 -5281 2057 115 7 11 chr9 87567424 87567711 -30294916 + AluSx SINE Alu 1 286 -26 1668 252 48 55 chr9 87567711 87568062 -30294565 + L1MEc LINE L1 1115 1467 -4929 1903 182 83 21 chr9 87568151 87568586 -30294041 - MLT1C LTR MaLR 0 467 6 233 276 14 8 chr9 87568591 87568760 -30293867 + L1 LINE L1 4936 5104 -1042 727 209 105 31 chr9 87568772 87569030 -30293597 + L1M4 LINE L1 3844 4120 -2026 200 284 92 9 chr9 87569057 87569166 -30293461 + L2 LINE L2 2208 2325 -989 23 0 0 0 chr9 87569526 87569549 -30293078 + AT_rich Low_complexity Low_complexity 1 23 0 2347 210 33 46 chr9 87570305 87570914 -30291713 + L1MC3 LINE L1 7109 7711 -74 546 79 26 0 chr9 87570914 87570990 -30291637 - MADE1 DNA Mariner 0 80 3 2347 210 33 46 chr9 87570990 87571014 -30291613 + L1MC3 LINE L1 7711 7734 -51 342 259 88 108 chr9 87571344 87571580 -30291047 - MIR SINE MIR 0 262 35 453 281 60 27 chr9 87572412 87572596 -30290031 - MIR3 SINE MIR 0 208 24 370 248 20 46 chr9 87572705 87572858 -30289769 + L1MC4 LINE L1 7473 7621 -421 1686 197 3 58 chr9 87572858 87573025 -30289602 + MLT1A1 LTR MaLR 1 176 -189 6086 87 25 9 chr9 87573025 87573898 -30288729 + L1PA13 LINE L1 5178 6068 -95 2597 118 0 0 chr9 87573898 87574262 -30288365 - THE1B LTR MaLR 0 364 1 6086 87 25 9 chr9 87574262 87574360 -30288267 + L1PA13 LINE L1 6068 6163 0 1686 197 3 58 chr9 87574360 87574573 -30288054 + MLT1A1 LTR MaLR 176 360 -5 622 237 114 15 chr9 87574637 87574956 -30287671 + L1MC4 LINE L1 7688 7995 0 223 296 102 0 chr9 87576083 87576171 -30286456 + L2 LINE L2 2900 2996 -276 317 226 10 88 chr9 87576393 87576495 -30286132 + MIR SINE MIR 28 121 -141 375 333 92 0 chr9 87576503 87576677 -30285950 - MIR SINE MIR -64 198 9 2056 124 35 51 chr9 87576986 87577060 -30285567 - THE1B LTR MaLR 0 364 290 2442 34 40 0 chr9 87577060 87577356 -30285271 + AluY SINE Alu 1 308 -3 2056 124 35 51 chr9 87577356 87577651 -30284976 - THE1B LTR MaLR -74 290 1 372 321 54 0 chr9 87577803 87577915 -30284712 + MIR SINE MIR 2 119 -143 2099 135 140 8 chr9 87578970 87579348 -30283279 + MSTA LTR MaLR 1 428 0 374 271 41 59 chr9 87579818 87580039 -30282588 - LTR40c LTR ERVL -91 374 158 1725 159 77 50 chr9 87580052 87580454 -30282173 - MSTB1 LTR MaLR 0 432 20 430 224 22 30 chr9 87580461 87580595 -30282032 - LTR40c LTR ERVL -332 133 1 203 175 0 0 chr9 87580763 87580803 -30281824 + T-rich Low_complexity Low_complexity 1 40 0 17451 157 24 9 chr9 87580803 87582530 -30280097 - L1PB1 LINE L1 0 6867 5168 273 57 0 0 chr9 87582530 87582565 -30280062 + (TTGTG)n Simple_repeat Simple_repeat 4 38 0 17451 157 24 9 chr9 87582565 87587598 -30275029 - L1PB1 LINE L1 -1699 5168 1 381 312 96 35 chr9 87587912 87588226 -30274401 - L1ME4a LINE L1 -199 5922 5590 422 211 0 22 chr9 87588720 87588810 -30273817 + MER21B LTR ERV1 1 88 -775 804 226 53 38 chr9 87588868 87589134 -30273493 + MER21B LTR ERV1 98 367 -496 3192 130 8 30 chr9 87589152 87589777 -30272850 - MER4B LTR ERV1 0 779 1 566 303 27 31 chr9 87589777 87590038 -30272589 + MER21B LTR ERV1 442 701 -162 270 264 0 58 chr9 87590227 87590314 -30272313 - MER5A DNA MER1_type 0 189 108 * 357 223 346 0 chr9 87590307 87590437 -30272190 + MER5A DNA MER1_type 9 183 -6 1804 168 58 6 chr9 87591277 87591622 -30271005 + MLT1A1 LTR MaLR 1 363 -2 378 335 78 17 chr9 87591646 87591838 -30270789 + MIR SINE MIR 36 237 -25 205 333 0 0 chr9 87591815 87591893 -30270734 - MIR SINE MIR 0 262 185 * 217 306 81 0 chr9 87591884 87591946 -30270681 - L2 LINE L2 0 3313 3247 218 250 39 0 chr9 87591960 87592012 -30270615 - MIR SINE MIR 0 262 209 460 209 75 34 chr9 87592065 87592210 -30270417 - MIR SINE MIR -60 202 58 261 180 49 0 chr9 87592242 87592303 -30270324 + MER116 DNA Mariner 3 66 -14 219 69 0 0 chr9 87592385 87592414 -30270213 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 521 343 0 0 chr9 87592630 87592805 -30269822 - MIR SINE MIR -3 259 85 1236 176 47 19 chr9 87594254 87594510 -30268117 - MLT1F1 LTR MaLR 0 567 305 550 199 34 20 chr9 87594555 87594701 -30267926 - MLT1F1 LTR MaLR -394 148 1 317 290 129 0 chr9 87594785 87594909 -30267718 + MIR3 SINE MIR 7 146 -62 254 299 75 9 chr9 87596365 87596472 -30266155 + MER5B DNA MER1_type 1 114 -64 246 344 8 47 chr9 87597532 87597660 -30264967 + L2 LINE L2 3183 3305 -8 268 243 28 75 chr9 87597713 87597757 -30264870 + MLT1C LTR MaLR 366 411 -56 2634 45 0 0 chr9 87597757 87598065 -30264562 + AluY SINE Alu 1 308 -3 268 243 28 75 chr9 87598065 87598127 -30264500 + MLT1C LTR MaLR 411 467 0 182 114 0 29 chr9 87598483 87598518 -30264109 + (GGAA)n Simple_repeat Simple_repeat 2 35 0 493 248 9 0 chr9 87599813 87599922 -30262705 + MER81 DNA DNA 1 110 -4 3182 237 56 30 chr9 87599997 87602031 -30260596 + L1ME1 LINE L1 4091 6166 0 663 191 9 0 chr9 87602221 87602331 -30260296 - FLAM_A SINE Alu -18 115 5 2465 82 0 3 chr9 87602370 87602673 -30259954 + AluSc SINE Alu 1 302 -7 359 293 54 0 chr9 87602690 87602837 -30259790 - L1ME4a LINE L1 -4 6117 5963 225 298 193 0 chr9 87602921 87603035 -30259592 + MIR SINE MIR 113 248 -14 325 288 76 5 chr9 87603134 87603332 -30259295 - L1ME4a LINE L1 -378 5743 5532 399 309 51 55 chr9 87603419 87603694 -30258933 + L1MEd LINE L1 13 286 -5833 387 234 9 45 chr9 87603913 87604024 -30258603 - MER81 DNA DNA -2 112 6 540 198 120 6 chr9 87604192 87604359 -30258268 - MER53 DNA DNA -3 186 1 305 245 41 10 chr9 87604567 87604665 -30257962 + L1MEd LINE L1 896 996 -5123 638 242 0 68 chr9 87604665 87604855 -30257772 + MIR SINE MIR 81 257 -5 426 216 24 16 chr9 87604976 87605101 -30257526 - MER103 DNA DNA -2 164 39 400 326 0 0 chr9 87605108 87605251 -30257376 - MIR SINE MIR -64 144 1 4027 134 16 126 chr9 87605384 87605661 -30256966 + pTR5 LTR ERV1 743 1049 -1557 189 0 0 0 chr9 87605661 87605682 -30256945 + (CAGC)n Simple_repeat Simple_repeat 1 21 0 4027 134 16 126 chr9 87605682 87606939 -30255688 + pTR5 LTR ERV1 1049 2606 0 195 311 97 29 chr9 87607826 87607929 -30254698 - L2 LINE L2 -1 3271 3162 340 108 0 31 chr9 87608180 87608245 -30254382 + (GGAA)n Simple_repeat Simple_repeat 2 64 0 255 221 70 35 chr9 87608723 87608809 -30253818 + MLT1K LTR MaLR 500 588 0 21 0 0 0 chr9 87609184 87609205 -30253422 + AT_rich Low_complexity Low_complexity 1 21 0 259 326 0 11 chr9 87609509 87609604 -30253023 - MLT1K LTR MaLR -337 251 158 1141 122 6 6 chr9 87609605 87609785 -30252842 - MSTA LTR MaLR -4 424 245 234 256 198 23 chr9 87610384 87610470 -30252157 + MIR SINE MIR 41 141 -121 315 298 122 0 chr9 87610478 87610609 -30252018 - L2 LINE L2 -15 3298 3152 2212 230 56 21 chr9 87610759 87611416 -30251211 + L1MC4 LINE L1 7170 7849 -193 477 290 38 67 chr9 87611541 87612243 -30250384 + L1MC4 LINE L1 7261 7977 -65 1316 177 20 0 chr9 87612816 87613070 -30249557 - Tigger6 DNA MER2_type -1251 346 88 2285 98 0 3 chr9 87613304 87613599 -30249028 - AluSp SINE Alu -19 294 1 2210 124 3 0 chr9 87613895 87614202 -30248425 - AluSx SINE Alu -4 308 1 280 335 85 43 chr9 87615062 87615226 -30247401 + MIR SINE MIR 19 189 -73 184 273 100 36 chr9 87617237 87617347 -30245280 - L2 LINE L2 -2 3270 3154 2099 122 7 0 chr9 87617611 87617907 -30244720 + AluSx SINE Alu 1 298 -14 1375 173 58 4 chr9 87618008 87618286 -30244341 + MER49 LTR ERV1 2 294 -629 1705 191 11 14 chr9 87618321 87618677 -30243950 + MER4D LTR ERV1 549 903 0 567 238 54 6 chr9 87619103 87619271 -30243356 - LTR16A LTR ERVL -1 449 274 181 200 0 0 chr9 87619391 87619426 -30243201 - L2 LINE L2 -24 3248 3214 * 192 182 26 91 chr9 87619399 87619476 -30243151 - MIR SINE MIR -25 237 166 649 297 48 32 chr9 87619994 87620243 -30242384 - MIR SINE MIR 0 262 10 300 333 20 0 chr9 87620632 87620734 -30241893 + L1ME LINE L1 5534 5637 -484 247 150 67 0 chr9 87621444 87621504 -30241123 + (AAATG)n Simple_repeat Simple_repeat 5 68 0 1665 155 93 25 chr9 87621605 87621972 -30240655 + L1MA9 LINE L1 5891 6282 -30 332 281 104 63 chr9 87622240 87622682 -30239945 + HAL1b LINE L1 309 768 -580 302 226 21 43 chr9 87622871 87622964 -30239663 - MIR3 SINE MIR -29 179 89 1772 247 185 1 chr9 87624473 87625128 -30237499 - LTR50 LTR ERVL -2 793 19 842 288 8 47 chr9 87625225 87625482 -30237145 - MIR SINE MIR -1 261 15 834 290 36 4 chr9 87625540 87625788 -30236839 - MIR SINE MIR 0 262 7 290 274 12 24 chr9 87626302 87626386 -30236241 + L2 LINE L2 3231 3313 0 21 0 0 0 chr9 87626805 87626826 -30235801 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr9 87627165 87627198 -30235429 + AT_rich Low_complexity Low_complexity 1 33 0 291 262 66 60 chr9 87627420 87627603 -30235024 - L1ME4a LINE L1 -53 6068 5885 303 125 10 52 chr9 87629692 87629788 -30232839 + (TA)n Simple_repeat Simple_repeat 1 92 0 250 203 17 17 chr9 87629802 87629861 -30232766 + (CATA)n Simple_repeat Simple_repeat 3 61 0 3601 196 52 18 chr9 87630169 87630897 -30231730 + L1MCa LINE L1 29 781 -5645 6292 187 94 18 chr9 87630906 87631194 -30231433 + L1MCa LINE L1 906 1171 -5255 1718 176 6 38 chr9 87631194 87631512 -30231115 + AluJb SINE Alu 1 308 -4 6292 187 94 18 chr9 87631512 87631801 -30230826 + L1MCa LINE L1 1171 1436 -4990 1433 173 12 109 chr9 87631801 87632205 -30230422 + MLT1A1 LTR MaLR 1 365 0 6292 187 94 18 chr9 87632205 87633175 -30229452 + L1MCa LINE L1 1436 2632 -3794 746 200 0 0 chr9 87633175 87633305 -30229322 + FLAM_C SINE Alu 3 132 -1 6292 187 94 18 chr9 87633305 87633733 -30228894 + L1MCa LINE L1 2632 3026 -3400 762 195 0 0 chr9 87633767 87633890 -30228737 - AluSq/x SINE Alu -190 123 1 1367 203 7 34 chr9 87633924 87634342 -30228285 + L1MCa LINE L1 3070 3476 -2950 1796 100 0 0 chr9 87634363 87634593 -30228034 - AluSq SINE Alu -83 230 1 2493 139 28 17 chr9 87634594 87634763 -30227864 + L1MC1 LINE L1 5844 6010 -323 1791 128 68 19 chr9 87634763 87635084 -30227543 - MER44D DNA MER2_type 0 609 3 2493 139 28 17 chr9 87635084 87635382 -30227245 + L1MC1 LINE L1 6010 6316 -17 219 278 186 10 chr9 87635395 87635492 -30227135 + MIR SINE MIR 61 174 -88 338 60 84 0 chr9 87636692 87636775 -30225852 + GA-rich Low_complexity Low_complexity 1 90 0 187 405 26 0 chr9 87637005 87637121 -30225506 - L2 LINE L2 -470 2844 2726 2081 169 0 16 chr9 87637275 87637641 -30224986 - MER46B DNA MER2_type -1 235 1 964 166 69 14 chr9 87637881 87638098 -30224529 - L1MC2 LINE L1 0 6344 6116 3482 114 20 34 chr9 87638098 87638407 -30224220 + L1PA13 LINE L1 5004 5316 -852 747 151 7 7 chr9 87638407 87638546 -30224081 - L1PA14 LINE L1 0 6161 6023 3482 114 20 34 chr9 87638546 87639047 -30223580 + L1PA13 LINE L1 5316 5783 -385 257 121 227 15 chr9 87639047 87639113 -30223514 - MADE1 DNA Mariner 0 80 1 2572 101 13 3 chr9 87639113 87639491 -30223136 + L1PA13 LINE L1 5782 6163 0 4563 162 18 2 chr9 87639528 87640330 -30222297 - L1MC2 LINE L1 -212 6132 5319 1506 181 46 12 chr9 87640326 87640651 -30221976 - L1MD3 LINE L1 0 7995 7660 * 5217 225 50 65 chr9 87640687 87642014 -30220613 + L1M4 LINE L1 1 1346 -5298 1899 150 7 10 chr9 87642014 87642314 -30220313 + AluJb SINE Alu 1 299 -13 5217 225 50 65 chr9 87642314 87644871 -30217756 + L1M4 LINE L1 1346 3947 -2697 264 301 104 25 chr9 87645214 87645377 -30217250 + MIR SINE MIR 20 195 -67 22 0 0 0 chr9 87646261 87646283 -30216344 + AT_rich Low_complexity Low_complexity 1 22 0 833 241 24 19 chr9 87646618 87646825 -30215802 - MER63A DNA MER1_type 0 210 3 565 266 45 19 chr9 87648071 87648319 -30214308 + Charlie8 DNA MER1_type 1 274 -2143 387 301 45 8 chr9 87648883 87649016 -30213611 - MIR SINE MIR -123 139 2 230 288 122 16 chr9 87649090 87649231 -30213396 - MIR SINE MIR -62 146 14 785 232 24 102 chr9 87650680 87650871 -30211756 - MIR SINE MIR -35 227 58 1975 190 94 26 chr9 87650871 87651340 -30211287 + MLT1D LTR MaLR 3 503 -2 785 232 24 102 chr9 87651340 87651394 -30211233 - MIR SINE MIR -204 58 1 284 376 75 8 chr9 87654043 87654176 -30208451 + L2 LINE L2 3127 3268 -4 297 345 36 7 chr9 87654692 87654831 -30207796 + MIR SINE MIR 1 143 -119 509 339 41 72 chr9 87654836 87655225 -30207402 - L2 LINE L2 0 3272 2896 193 235 38 129 chr9 87655237 87655369 -30207258 + MIR SINE MIR 142 261 -1 378 370 30 0 chr9 87656353 87656488 -30206139 - MIR3 SINE MIR -19 189 51 21 36 0 0 chr9 87657123 87657151 -30205476 + AT_rich Low_complexity Low_complexity 1 28 0 3536 41 7 0 chr9 87658396 87658835 -30203792 - L1P LINE L1 -1519 4627 4186 * 3935 41 0 2 chr9 87658834 87659323 -30203304 + L1P LINE L1 4590 5077 -1069 626 168 112 19 chr9 87659321 87659482 -30203145 + L1MC2 LINE L1 6169 6344 0 * 531 206 0 0 chr9 87659722 87659814 -30202813 + Tigger4(Zombi) DNA MER2_type 1 92 -2639 22094 29 2 1 chr9 87659914 87663339 -30199288 + L1PA2 LINE L1 2723 6153 -2 196 179 18 54 chr9 87663362 87663418 -30199209 + MIR SINE MIR 178 231 -31 21 57 0 0 chr9 87663419 87663454 -30199173 + AT_rich Low_complexity Low_complexity 1 35 0 5364 197 21 8 chr9 87664102 87665289 -30197338 - L1MC1 LINE L1 -3 6330 5132 665 183 52 63 chr9 87665296 87665487 -30197140 - L1MC5 LINE L1 -66 7895 7707 22 35 0 0 chr9 87665519 87665548 -30197079 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr9 87665579 87665610 -30197017 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr9 87665624 87665647 -30196980 + AT_rich Low_complexity Low_complexity 1 23 0 497 297 93 34 chr9 87665798 87666215 -30196412 - L1MC1 LINE L1 -1322 4824 4383 591 85 47 28 chr9 87666278 87666564 -30196063 + (TA)n Simple_repeat Simple_repeat 1 291 0 1240 197 84 21 chr9 87666663 87666947 -30195680 - AluJo SINE Alu 0 302 1 947 122 13 11 chr9 87667127 87668235 -30194392 - HSATII Satellite Satellite 0 1110 1 986 118 10 16 chr9 87668265 87669576 -30193051 - HSATII Satellite Satellite -3 1303 1 199 132 29 44 chr9 87669609 87669677 -30192950 + (GAATG)n Satellite Satellite 2 68 0 * 914 122 19 8 chr9 87669674 87670059 -30192568 - HSATII Satellite Satellite -102 389 1 714 136 0 45 chr9 87670093 87670269 -30192358 - HSATII Satellite Satellite -2 168 1 195 383 56 9 chr9 87670576 87670683 -30191944 - MIR3 SINE MIR 0 208 97 692 251 47 37 chr9 87670828 87671043 -30191584 + MIR SINE MIR 46 262 0 1290 189 66 24 chr9 87671889 87672223 -30190404 - MER7A DNA MER2_type 0 346 1 203 327 106 11 chr9 87672288 87672435 -30190192 - MIR SINE MIR -81 181 17 411 265 48 1 chr9 87673676 87673878 -30188749 - L1ME4a LINE L1 -224 5897 5683 1127 184 47 4 chr9 87673883 87674138 -30188489 - L1MD3 LINE L1 -1 7994 7729 2041 153 0 16 chr9 87674172 87674537 -30188090 - MER47A DNA MER2_type -7 359 1 344 341 45 0 chr9 87674566 87674698 -30187929 - L1ME4a LINE L1 -469 5652 5515 228 170 0 0 chr9 87675144 87675191 -30187436 + MER112 DNA MER1_type 121 167 -93 1261 175 54 14 chr9 87675217 87675514 -30187113 + MER33 DNA MER1_type 2 310 -14 26 30 0 0 chr9 87676778 87676811 -30185816 + AT_rich Low_complexity Low_complexity 1 33 0 574 278 60 53 chr9 87679148 87679579 -30183048 + MER113 DNA MER1_type? 83 516 -5 214 208 21 0 chr9 87679585 87679633 -30182994 + L3 LINE CR1 1527 1575 -2 2148 137 20 0 chr9 87680063 87680369 -30182258 + AluSx SINE Alu 1 312 0 196 272 22 76 chr9 87680777 87680869 -30181758 - L2 LINE L2 0 3272 3186 2152 150 8 3 chr9 87681916 87682270 -30180357 - MLT1A1 LTR MaLR 0 365 10 861 279 60 99 chr9 87682503 87682613 -30180014 + L2 LINE L2 2376 2489 -824 1541 212 85 14 chr9 87682613 87683047 -30179580 - MLT1C LTR MaLR -2 465 1 861 279 60 99 chr9 87683047 87683918 -30178709 + L2 LINE L2 2489 3313 0 409 234 36 27 chr9 87684603 87684714 -30177913 - MER81 DNA DNA -2 112 1 597 256 37 12 chr9 87685881 87686045 -30176582 - MIR SINE MIR -44 218 51 224 140 60 0 chr9 87686127 87686177 -30176450 + (TA)n Simple_repeat Simple_repeat 2 54 0 2229 100 3 13 chr9 87686208 87686508 -30176119 - AluSp SINE Alu -16 297 1 16271 41 12 0 chr9 87686662 87689478 -30173149 - L1PA4 LINE L1 -30 6125 3275 * 40639 35 22 1 chr9 87689475 87695499 -30167128 - L1PA2 LINE L1 -4 6151 1 24164 66 1 4 chr9 87695498 87698809 -30163818 - L1PA4 LINE L1 -2842 3304 2 * 191 294 79 40 chr9 87698897 87699023 -30163604 + MIR3 SINE MIR 4 134 -74 183 213 75 50 chr9 87698963 87699043 -30163584 + L2 LINE L2 2611 2692 -622 * 457 233 60 47 chr9 87699098 87699248 -30163379 + MIR SINE MIR 110 261 -1 191 360 0 12 chr9 87699744 87699830 -30162797 - MIR SINE MIR -146 116 32 279 0 0 0 chr9 87699833 87699864 -30162763 + (TG)n Simple_repeat Simple_repeat 2 32 0 186 325 136 24 chr9 87700174 87700506 -30162121 + L2 LINE L2 2362 2730 -584 486 267 43 18 chr9 87701788 87702006 -30160621 - L1MC4a LINE L1 -238 5883 5669 1176 270 113 38 chr9 87702236 87702839 -30159788 - L3 LINE CR1 -230 1347 700 758 237 22 58 chr9 87703009 87703233 -30159394 + L2 LINE L2 3098 3313 0 5210 79 6 0 chr9 87703464 87704185 -30158442 + L1PA8A LINE L1 5380 6104 -27 2229 100 3 13 chr9 87704338 87704638 -30157989 + AluSp SINE Alu 1 297 -16 224 140 60 0 chr9 87704669 87704719 -30157908 + (TA)n Simple_repeat Simple_repeat 1 53 0 597 256 37 12 chr9 87704801 87704965 -30157662 + MIR SINE MIR 51 218 -44 409 234 36 27 chr9 87706132 87706243 -30156384 + MER81 DNA DNA 1 112 -2 300 320 56 0 chr9 87706928 87707053 -30155574 - L2 LINE L2 0 3313 3182 2726 29 9 0 chr9 87707278 87707623 -30155004 - L1P LINE L1 -1612 4534 4187 7153 45 6 5 chr9 87707623 87709181 -30153446 + L1PA5 LINE L1 4590 6147 -7 2397 74 0 0 chr9 87710650 87710947 -30151680 + AluY SINE Alu 1 297 -14 503 69 14 0 chr9 87710947 87711019 -30151608 + (GA)n Simple_repeat Simple_repeat 1 73 0 442 247 62 10 chr9 87711020 87711117 -30151510 - L2 LINE L2 -18 3295 3194 251 325 94 26 chr9 87711125 87711242 -30151385 + MIR3 SINE MIR 81 205 -3 245 385 94 0 chr9 87711347 87711464 -30151163 - L2 LINE L2 -16 3256 3129 392 283 80 47 chr9 87711522 87712296 -30150331 - L1ME4a LINE L1 -53 6068 5255 760 158 0 43 chr9 87712364 87712503 -30150124 + FLAM_C SINE Alu 1 133 0 336 143 0 0 chr9 87712503 87712559 -30150068 + (GGA)n Simple_repeat Simple_repeat 2 57 0 3010 23 6 0 chr9 87712648 87713000 -30149627 + L1PA2 LINE L1 5800 6153 -2 192 179 18 54 chr9 87713023 87713079 -30149548 + MIR SINE MIR 178 231 -31 21 57 0 0 chr9 87713080 87713115 -30149512 + AT_rich Low_complexity Low_complexity 1 35 0 5058 197 21 8 chr9 87713763 87714950 -30147677 - L1MC1 LINE L1 -3 6330 5132 615 183 52 63 chr9 87714957 87715148 -30147479 - L1MC5 LINE L1 -66 7895 7707 22 35 0 0 chr9 87715180 87715209 -30147418 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr9 87715240 87715271 -30147356 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr9 87715285 87715308 -30147319 + AT_rich Low_complexity Low_complexity 1 23 0 329 290 67 35 chr9 87715459 87715714 -30146913 - L1MC1 LINE L1 -1322 4824 4562 623 77 29 45 chr9 87716033 87716321 -30146306 + (TA)n Simple_repeat Simple_repeat 1 283 0 1355 191 80 17 chr9 87716416 87716704 -30145923 - AluJo SINE Alu -6 306 1 437 275 29 31 chr9 87717168 87717331 -30145296 - MIR3 SINE MIR -17 191 33 226 271 139 49 chr9 87718745 87718867 -30143760 - MIR3 SINE MIR -52 156 24 1089 142 24 0 chr9 87719933 87720102 -30142525 - AluSg/x SINE Alu -18 294 122 9142 195 63 16 chr9 87720113 87724021 -30138606 + L1MA10 LINE L1 3083 7243 -510 897 110 0 0 chr9 87724021 87724157 -30138470 + (TA)n Simple_repeat Simple_repeat 1 136 0 9142 195 63 16 chr9 87724157 87724680 -30137947 + L1MA10 LINE L1 7243 7740 -13 417 236 38 0 chr9 87725227 87725333 -30137294 - MIR SINE MIR -86 176 67 387 333 57 25 chr9 87726204 87726363 -30136264 + MIR SINE MIR 49 212 -50 1799 146 0 11 chr9 87727002 87727313 -30135314 - AluSx SINE Alu 0 318 11 243 255 82 9 chr9 87727344 87727450 -30135177 - MIR SINE MIR -44 164 43 215 146 55 18 chr9 87727691 87727746 -30134881 + (GTTTG)n Simple_repeat Simple_repeat 2 58 0 25 31 0 0 chr9 87728109 87728141 -30134486 + AT_rich Low_complexity Low_complexity 1 32 0 436 313 42 42 chr9 87728478 87728695 -30133932 - MIR SINE MIR -17 245 29 199 279 126 18 chr9 87729067 87729178 -30133449 - MIR SINE MIR -29 233 111 * 319 276 31 71 chr9 87729156 87729283 -30133344 + MIR SINE MIR 16 137 -125 1322 242 89 16 chr9 87729452 87729877 -30132750 + MER66A LTR ERV1 97 478 0 231 300 135 18 chr9 87730245 87730415 -30132212 + L2 LINE L2 2867 3056 -216 331 305 53 11 chr9 87731245 87731340 -30131287 - L2 LINE L2 -10 3262 3164 708 283 78 37 chr9 87731343 87731587 -30131040 + MIR SINE MIR 6 259 -3 188 323 81 0 chr9 87732208 87732270 -30130357 - L2 LINE L2 -123 3149 3083 1541 210 3 16 chr9 87732297 87732606 -30130021 + AluJo SINE Alu 1 305 -7 702 200 32 26 chr9 87732844 87732999 -30129628 - MER45A DNA AcHobo -22 156 1 22 0 0 0 chr9 87733188 87733210 -30129417 + AT_rich Low_complexity Low_complexity 1 22 0 289 334 105 43 chr9 87733591 87733962 -30128665 + L3 LINE CR1 961 1354 -223 185 200 0 0 chr9 87735036 87735071 -30127556 - L2 LINE L2 -28 3244 3210 342 266 105 14 chr9 87735805 87735948 -30126679 - LTR67 LTR ERVL -4 553 398 23 33 0 0 chr9 87737316 87737346 -30125281 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr9 87737384 87737406 -30125221 + GC_rich Low_complexity Low_complexity 1 22 0 1129 16 0 0 chr9 87737746 87737868 -30124759 + L1PA2 LINE L1 6030 6151 -4 * 18127 38 5 0 chr9 87737865 87740729 -30121898 + L1PA4 LINE L1 3275 6152 -3 3266 34 3 0 chr9 87740737 87741122 -30121505 + L1PA4 LINE L1 5770 6155 0 213 65 0 0 chr9 87741147 87741178 -30121449 + (A)n Simple_repeat Simple_repeat 1 31 0 2378 187 36 95 chr9 87741454 87742041 -30120586 + MLT2B3 LTR ERVL 1 552 -2 295 328 58 35 chr9 87742154 87742325 -30120302 + L2 LINE L2 2613 2787 -527 251 277 84 34 chr9 87742352 87742471 -30120156 + L2 LINE L2 2914 3038 -234 1125 232 73 96 chr9 87743302 87743824 -30118803 - LTR33A LTR ERVL 0 523 14 1537 142 27 4 chr9 87744155 87744380 -30118247 - MER30 DNA MER1_type 0 230 1 842 114 27 34 chr9 87744491 87744640 -30117987 + FRAM SINE Alu 20 167 -9 531 289 117 5 chr9 87744796 87744993 -30117634 + MIR SINE MIR 32 250 -12 237 351 60 20 chr9 87745244 87745395 -30117232 - L2 LINE L2 0 3272 3116 258 236 11 34 chr9 87745707 87745796 -30116831 + GA-rich Low_complexity Low_complexity 4 90 0 222 369 100 8 chr9 87745805 87745935 -30116692 - L2 LINE L2 -182 3090 2949 274 339 11 75 chr9 87746028 87746214 -30116413 - L2 LINE L2 -468 2846 2673 589 278 92 34 chr9 87746285 87746333 -30116294 + LTR16A LTR ERVL 97 141 -309 1852 107 232 23 chr9 87746333 87746687 -30115940 - MSTA LTR MaLR 0 428 1 589 278 92 34 chr9 87746687 87746965 -30115662 + LTR16A LTR ERVL 141 442 -8 413 222 33 0 chr9 87748108 87748198 -30114429 - L1ME3A LINE L1 -230 5940 5848 207 0 0 0 chr9 87750078 87750101 -30112526 + (GA)n Simple_repeat Simple_repeat 2 24 0 392 333 6 6 chr9 87750625 87750787 -30111840 - MIR3 SINE MIR -15 193 32 188 246 49 0 chr9 87751255 87751316 -30111311 + MIR SINE MIR 108 171 -91 257 339 27 9 chr9 87751800 87751912 -30110715 + MIR SINE MIR 33 146 -62 288 0 0 0 chr9 87752577 87752609 -30110018 + (TG)n Simple_repeat Simple_repeat 2 33 0 2623 104 16 27 chr9 87752852 87753227 -30109400 - THE1C LTR MaLR 0 375 5 303 269 31 18 chr9 87754171 87754319 -30108308 + L1PA8A LINE L1 5659 5805 -326 242 271 54 54 chr9 87754386 87754552 -30108075 + L1ME4a LINE L1 5945 6110 -11 274 364 15 23 chr9 87755835 87755967 -30106660 - MIR SINE MIR -62 146 16 237 317 0 119 chr9 87756498 87756599 -30106028 + MIR SINE MIR 42 130 -78 198 0 0 0 chr9 87757314 87757336 -30105291 + (TAA)n Simple_repeat Simple_repeat 2 23 0 772 277 66 9 chr9 87757494 87757826 -30104801 + L2 LINE L2 775 1125 -2189 1968 138 28 0 chr9 87758181 87758463 -30104164 - AluSx SINE Alu -22 290 1 275 167 0 0 chr9 87758593 87758647 -30103980 - L1ME4a LINE L1 -4 6117 6064 373 251 120 77 chr9 87758695 87758994 -30103633 - L1ME3A LINE L1 -271 5850 5539 264 130 0 0 chr9 87759311 87759357 -30103270 + (CA)n Simple_repeat Simple_repeat 1 46 0 558 267 154 17 chr9 87759725 87759965 -30102662 + LTR37B LTR ERV1 196 468 0 411 143 66 22 chr9 87760624 87760715 -30101912 - LTR37A LTR ERV1 -23 403 309 4531 117 89 76 chr9 87760715 87762076 -30100551 + pTR5 LTR ERV1 66 2438 0 248 218 18 18 chr9 87762307 87762417 -30100210 + GA-rich Low_complexity Low_complexity 2 111 0 22 0 0 0 chr9 87763279 87763301 -30099326 + AT_rich Low_complexity Low_complexity 1 22 0 371 345 28 7 chr9 87763565 87763710 -30098917 - MIR SINE MIR -34 228 81 447 405 50 18 chr9 87764777 87765120 -30097507 - L2 LINE L2 -18 3254 2901 915 216 77 25 chr9 87765586 87766030 -30096597 - LTR33A LTR ERVL -23 500 2 208 329 14 14 chr9 87766164 87766237 -30096390 - L2 LINE L2 -607 2707 2635 1278 265 14 17 chr9 87766451 87766806 -30095821 + MLT1I LTR MaLR 55 408 -1 193 294 65 22 chr9 87766834 87766926 -30095701 + MIR SINE MIR 117 212 -50 255 61 0 0 chr9 87767545 87767578 -30095049 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 307 346 131 74 chr9 87767596 87767963 -30094664 - L2 LINE L2 -54 3218 2831 465 271 42 8 chr9 87768132 87768250 -30094377 + L2 LINE L2 3190 3311 -2 275 284 84 73 chr9 87768253 87768528 -30094099 - L2 LINE L2 -170 3102 2825 332 238 148 20 chr9 87769172 87769273 -30093354 + MIR SINE MIR 21 134 -74 1784 163 39 0 chr9 87769291 87769574 -30093053 + AluJo SINE Alu 1 294 -18 251 242 97 0 chr9 87769762 87769824 -30092803 - MIR SINE MIR -14 248 181 264 314 0 0 chr9 87769853 87769923 -30092704 - L2 LINE L2 -11 3261 3192 2315 132 5 65 chr9 87769964 87770351 -30092276 + THE1B LTR MaLR 1 364 0 241 229 0 49 chr9 87770385 87770446 -30092181 - L3 LINE CR1 -319 1258 1201 210 327 0 0 chr9 87771207 87771262 -30091365 + L2 LINE L2 3205 3259 -13 216 0 0 0 chr9 87771262 87771286 -30091341 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 701 212 104 26 chr9 87771425 87771618 -30091009 - MIR SINE MIR -3 259 52 359 77 0 46 chr9 87772521 87772586 -30090041 + (A)n Simple_repeat Simple_repeat 1 62 0 210 315 0 22 chr9 87774446 87774538 -30088089 + L2 LINE L2 2946 3035 -237 2481 64 13 0 chr9 87774867 87775165 -30087462 - AluSp SINE Alu -11 302 1 501 297 23 7 chr9 87775223 87775400 -30087227 - MIR SINE MIR -63 145 20 207 318 32 0 chr9 87775682 87775745 -30086882 - L2 LINE L2 -3 3269 3205 202 315 48 63 chr9 87775775 87776045 -30086582 + L2 LINE L2 2848 3113 -159 2144 128 0 0 chr9 87776477 87776774 -30085853 + AluSq SINE Alu 1 297 -16 604 323 48 8 chr9 87776994 87777245 -30085382 + MIR SINE MIR 2 262 0 440 288 29 100 chr9 87778194 87778545 -30084082 - MLT1I LTR MaLR -44 365 40 809 217 38 33 chr9 87779182 87779366 -30083261 - AluJb SINE Alu -5 307 123 193 276 13 66 chr9 87779886 87779962 -30082665 + MIR SINE MIR 113 184 -78 231 61 0 0 chr9 87780529 87780562 -30082065 + (CAAAAA)n Simple_repeat Simple_repeat 5 37 0 312 327 43 74 chr9 87781090 87781252 -30081375 - L2 LINE L2 0 3272 3116 267 229 29 29 chr9 87781270 87781340 -30081287 + MIR3 SINE MIR 3 72 -136 228 216 0 0 chr9 87781412 87781463 -30081164 + (CA)n Simple_repeat Simple_repeat 2 52 0 503 248 41 8 chr9 87781463 87781584 -30081043 + L2 LINE L2 3189 3313 0 236 309 0 91 chr9 87781581 87781691 -30080936 + MIR3 SINE MIR 76 175 -33 * 377 286 26 39 chr9 87782969 87783123 -30079504 - MIR SINE MIR -2 260 109 304 295 57 0 chr9 87783178 87783300 -30079327 + L2 LINE L2 3144 3272 0 396 315 34 20 chr9 87783326 87783475 -30079152 + MIR3 SINE MIR 31 181 -27 186 320 66 16 chr9 87783896 87784018 -30078609 - L2 LINE L2 -7 3306 3179 1475 201 28 88 chr9 87784743 87784847 -30077780 + MER58B DNA MER1_type 1 110 -2310 618 168 168 0 chr9 87784847 87784954 -30077673 - FLAM_A SINE Alu -8 125 1 1475 201 28 88 chr9 87784954 87785212 -30077415 + MER58B DNA MER1_type 110 341 0 192 273 18 0 chr9 87787202 87787257 -30075370 - MIR3 SINE MIR -4 204 149 909 228 5 15 chr9 87787378 87787580 -30075047 + MER106A DNA MER1_type 6 205 -31 242 279 0 0 chr9 87787588 87787656 -30074971 - MER117 DNA MER1_type -127 70 3 339 336 8 45 chr9 87787663 87787797 -30074830 - MIR SINE MIR -55 153 25 191 292 70 98 chr9 87788486 87788874 -30073753 + L2 LINE L2 2672 3054 -218 2108 145 135 11 chr9 87789094 87789473 -30073154 + MSTA LTR MaLR 1 426 -2 1641 252 30 5 chr9 87789723 87790152 -30072475 - MER113 DNA MER1_type? -60 461 22 353 368 0 12 chr9 87791102 87791268 -30071359 + L3 LINE CR1 909 1072 -505 2208 95 3 0 chr9 87791554 87791863 -30070764 - AluSx SINE Alu 0 310 1 303 270 270 31 chr9 87791965 87792291 -30070336 + L3 LINE CR1 1085 1488 -89 200 230 63 126 chr9 87793236 87793410 -30069217 - L2 LINE L2 -35 3237 3075 198 0 0 0 chr9 87793484 87793506 -30069121 + (A)n Simple_repeat Simple_repeat 1 22 0 2080 128 0 0 chr9 87794315 87794640 -30067987 + AluSx SINE Alu 1 325 0 233 327 45 19 chr9 87794642 87794798 -30067829 - HAL1 LINE L1 -129 2378 2219 913 157 30 54 chr9 87794830 87794996 -30067631 + AluJo SINE Alu 1 162 -150 1007 117 37 0 chr9 87795102 87795264 -30067363 + AluSp SINE Alu 125 292 -21 198 0 0 0 chr9 87795473 87795495 -30067132 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 237 274 32 0 chr9 87795673 87795735 -30066892 - L2 LINE L2 0 3313 3250 195 286 18 18 chr9 87796094 87796150 -30066477 - L2 LINE L2 -5 3267 3212 268 244 23 58 chr9 87796903 87796989 -30065638 + L2 LINE L2 3152 3234 -38 248 337 11 11 chr9 87797068 87797160 -30065467 + MER5B DNA MER1_type 10 101 -77 350 290 21 26 chr9 87797554 87797707 -30064920 + MIR SINE MIR 5 152 -60 2249 108 0 0 chr9 87798096 87798392 -30064235 - AluSg SINE Alu -10 300 5 227 227 0 0 chr9 87798708 87798752 -30063875 - LTR6A LTR ERV1 -394 170 127 333 346 84 28 chr9 87798796 87798975 -30063652 - MER5A DNA MER1_type 0 189 1 937 207 106 0 chr9 87799668 87799866 -30062761 + MER58A DNA MER1_type 1 219 -5 398 226 14 55 chr9 87800140 87800286 -30062341 - Charlie7 DNA MER1_type 0 2612 2473 265 305 23 81 chr9 87800417 87800591 -30062036 - L2 LINE L2 -189 3083 2920 461 319 40 28 chr9 87801786 87801905 -30060722 + L1MC/D LINE L1 3850 3966 -2180 1724 190 20 0 chr9 87801905 87802210 -30060417 + AluJb SINE Alu 2 312 0 461 319 40 28 chr9 87802210 87802485 -30060142 + L1MC/D LINE L1 3966 4249 -1897 1163 292 67 51 chr9 87802775 87803298 -30059329 + L1MC/D LINE L1 4297 4401 -1745 2206 110 0 13 chr9 87803298 87803598 -30059029 + AluSx SINE Alu 1 296 -16 1163 292 67 51 chr9 87803598 87804513 -30058114 + L1MC/D LINE L1 4401 5300 -846 612 248 153 0 chr9 87805016 87805173 -30057454 + MER5A DNA MER1_type 9 189 0 237 275 110 0 chr9 87805259 87805350 -30057277 - MIR SINE MIR -2 260 160 484 294 86 0 chr9 87805355 87805542 -30057085 - MER113 DNA MER1_type? -5 516 314 207 284 116 21 chr9 87805585 87805680 -30056947 - L3 LINE CR1 -178 1399 1296 405 258 114 37 chr9 87806187 87806513 -30056114 + L1ME4a LINE L1 5351 5698 -423 262 293 12 12 chr9 87806592 87806674 -30055953 + L1ME4a LINE L1 5739 5820 -301 310 273 76 71 chr9 87806808 87807046 -30055581 + L1MC4a LINE L1 5667 5905 -1903 51 75 0 0 chr9 87807439 87807546 -30055081 + AT_rich Low_complexity Low_complexity 1 107 0 320 226 164 41 chr9 87807589 87807735 -30054892 + L1ME4a LINE L1 5946 6109 -12 477 252 60 33 chr9 87809024 87809175 -30053452 - MER5B DNA MER1_type 0 178 24 327 324 45 22 chr9 87809278 87809457 -30053170 + L2 LINE L2 2659 2841 -473 2047 299 35 29 chr9 87809853 87810542 -30052085 - MER115 DNA AcHobo 0 693 1 348 335 39 87 chr9 87810563 87810817 -30051810 + L2 LINE L2 3027 3268 -4 315 334 50 31 chr9 87811907 87812086 -30050541 + MIR SINE MIR 30 209 -53 300 344 0 0 chr9 87812400 87812493 -30050134 - L2 LINE L2 -10 3262 3170 28 29 0 0 chr9 87812648 87812683 -30049944 + AT_rich Low_complexity Low_complexity 1 35 0 284 301 129 48 chr9 87812863 87813072 -30049555 - L2 LINE L2 -470 2844 2619 409 304 93 26 chr9 87814148 87814342 -30048285 - L3 LINE CR1 -74 1503 1297 2110 130 3 0 chr9 87814406 87814698 -30047929 + AluJb SINE Alu 1 293 -19 271 203 63 89 chr9 87815182 87815261 -30047366 - MIR SINE MIR -158 104 28 1341 167 89 14 chr9 87815273 87815580 -30047047 + MER33 DNA MER1_type 1 323 -1 527 324 91 39 chr9 87817273 87817736 -30044891 - MLT1K LTR MaLR -91 497 11 547 262 165 10 chr9 87818125 87818331 -30044296 - MIR SINE MIR -24 238 1 390 259 40 40 chr9 87818528 87818662 -30043965 + MIR SINE MIR 18 151 -106 1966 125 14 7 chr9 87818662 87818959 -30043668 + AluSq SINE Alu 1 299 -14 390 259 40 40 chr9 87818959 87819002 -30043625 + MIR SINE MIR 150 192 -65 387 0 0 0 chr9 87819023 87819066 -30043561 + (TAGTG)n Simple_repeat Simple_repeat 2 44 0 388 205 13 0 chr9 87820241 87820319 -30042308 - MER116 DNA Mariner -1 79 1 865 309 124 19 chr9 87820448 87820827 -30041800 + L2 LINE L2 2895 3313 0 225 246 439 0 chr9 87822301 87822415 -30040212 + MER5A DNA MER1_type 26 189 0 355 296 40 46 chr9 87822700 87822852 -30039775 + MER117 DNA MER1_type 8 158 -39 1127 214 62 0 chr9 87823641 87823851 -30038776 - MER58A DNA MER1_type 0 224 2 190 339 92 9 chr9 87823936 87824045 -30038582 - L2 LINE L2 -18 3254 3137 2383 125 119 8 chr9 87824901 87825286 -30037341 - MSTA LTR MaLR 0 428 1 472 333 35 5 chr9 87825644 87825842 -30036785 + MIR SINE MIR 2 205 -57 214 184 0 0 chr9 87825929 87825967 -30036660 - MIR SINE MIR -82 180 143 1332 86 86 9 chr9 87826020 87826241 -30036386 + LTR5 LTR ERVK 1 238 -731 214 254 15 72 chr9 87826419 87826510 -30036117 - MIR SINE MIR -82 180 53 8222 54 9 0 chr9 87826510 87827467 -30035160 + LTR5 LTR ERVK 1 966 -3 214 254 15 72 chr9 87827467 87827506 -30035121 - MIR SINE MIR -209 53 13 192 40 0 0 chr9 87827581 87827606 -30035021 + (CAT)n Simple_repeat Simple_repeat 3 27 0 916 261 35 0 chr9 87827845 87828048 -30034579 - MER63A DNA MER1_type 0 210 1 423 310 100 5 chr9 87828048 87828248 -30034379 + MIR SINE MIR 31 249 -13 204 309 181 0 chr9 87828641 87828735 -30033892 - MIR3 SINE MIR -1 207 97 289 284 14 0 chr9 87829112 87829186 -30033441 - MER103 DNA DNA -30 136 62 492 99 0 0 chr9 87829684 87829755 -30032872 + (TGGA)n Simple_repeat Simple_repeat 4 74 0 218 287 23 11 chr9 87829755 87829842 -30032785 + (TGAA)n Simple_repeat Simple_repeat 4 91 0 202 346 20 10 chr9 87829982 87830083 -30032544 - L2 LINE L2 -527 2787 2686 235 318 0 0 chr9 87830571 87830634 -30031993 + L2 LINE L2 3204 3266 -6 526 214 48 40 chr9 87830661 87830787 -30031840 - L2 LINE L2 0 3313 3187 330 324 159 0 chr9 87830817 87830962 -30031665 - MIR3 SINE MIR -2 206 39 215 356 170 0 chr9 87831267 87831402 -30031225 + MIR SINE MIR 53 210 -52 290 282 38 30 chr9 87832734 87832865 -30029762 + MIR3 SINE MIR 65 196 -12 335 289 123 72 chr9 87834290 87834658 -30027969 - L2 LINE L2 -276 2996 2614 246 311 96 15 chr9 87834910 87835045 -30027582 + MIR SINE MIR 117 262 0 185 316 129 39 chr9 87835859 87836450 -30026177 + L2 LINE L2 1853 2496 -818 199 356 183 0 chr9 87836674 87836789 -30025838 + L2 LINE L2 3136 3271 -1 1192 239 147 52 chr9 87837069 87837297 -30025330 - LTR33A LTR ERVL 0 523 318 739 181 100 19 chr9 87837297 87837457 -30025170 + MER69A DNA AcHobo 1 173 -4 1192 239 147 52 chr9 87837457 87837705 -30024922 - LTR33A LTR ERVL -205 318 2 1067 170 11 0 chr9 87838655 87838837 -30023790 - MER20 DNA MER1_type -5 214 31 814 119 0 119 chr9 87839031 87839182 -30023445 + FLAM_A SINE Alu 1 133 0 571 350 45 0 chr9 87839599 87839822 -30022805 - MIR SINE MIR -10 252 20 183 87 0 65 chr9 87840450 87840496 -30022131 + (TTCC)n Simple_repeat Simple_repeat 2 44 0 251 306 159 13 chr9 87840496 87840653 -30021974 - L2 LINE L2 -1 3271 3092 520 318 30 10 chr9 87841021 87841222 -30021405 - MIR SINE MIR -56 206 2 294 248 119 0 chr9 87843135 87843244 -30019383 - L1ME4a LINE L1 -2 6119 5998 379 224 174 6 chr9 87843286 87843447 -30019180 - L1ME4a LINE L1 -210 5911 5724 231 197 16 16 chr9 87843552 87843613 -30019014 - LTR33 LTR ERVL -59 462 402 * 237 269 185 9 chr9 87843599 87843707 -30018920 - LTR33 LTR ERVL -394 127 1 22 0 0 0 chr9 87844366 87844388 -30018239 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr9 87845731 87845753 -30016874 + AT_rich Low_complexity Low_complexity 1 22 0 225 338 25 99 chr9 87847642 87847843 -30014784 + L2 LINE L2 2868 3053 -219 2886 10 0 0 chr9 87848111 87848421 -30014206 + AluYb8 SINE Alu 1 310 -8 431 326 107 5 chr9 87848441 87848637 -30013990 - MIR SINE MIR -18 244 29 482 315 101 78 chr9 87848770 87849229 -30013398 + L2 LINE L2 2459 2950 -322 2507 138 60 17 chr9 87849229 87849643 -30012984 + MSTB1 LTR MaLR 1 432 0 482 315 101 78 chr9 87849643 87849971 -30012656 + L2 LINE L2 2950 3269 -3 215 288 17 0 chr9 87849991 87850050 -30012577 + MIR3 SINE MIR 126 185 -23 254 335 56 62 chr9 87850160 87850321 -30012306 + L3 LINE CR1 1417 1576 -1 239 333 23 11 chr9 87850451 87850538 -30012089 - MER5A DNA MER1_type -15 174 87 224 226 226 59 chr9 87850471 87850573 -30012054 + MER5A DNA MER1_type 47 165 -24 * 2130 92 0 11 chr9 87850585 87850894 -30011733 - AluSc SINE Alu 0 306 1 244 343 48 19 chr9 87850911 87851016 -30011611 + MIR SINE MIR 16 123 -85 228 318 140 0 chr9 87851597 87851704 -30010923 - L2 LINE L2 -1 3312 3191 654 231 82 51 chr9 87851714 87851870 -30010757 + MER3 DNA MER1_type 9 174 -35 1835 94 90 0 chr9 87851870 87852126 -30010501 - AluSp SINE Alu -24 289 11 654 231 82 51 chr9 87852126 87852164 -30010463 + MER3 DNA MER1_type 174 209 0 446 195 31 13 chr9 87852178 87852337 -30010290 + GA-rich Low_complexity Low_complexity 4 165 0 574 291 38 33 chr9 87853302 87853515 -30009112 - MIR SINE MIR -1 261 48 230 301 0 14 chr9 87853746 87853819 -30008808 - L2 LINE L2 0 3272 3201 234 0 0 0 chr9 87856446 87856472 -30006155 + (A)n Simple_repeat Simple_repeat 1 26 0 244 213 0 0 chr9 87856695 87856742 -30005885 + (TGAA)n Simple_repeat Simple_repeat 3 49 0 389 256 66 16 chr9 87857050 87857171 -30005456 + MER94 DNA DNA 2 128 -6 236 304 96 24 chr9 87857230 87857355 -30005272 + MIR SINE MIR 123 256 -6 1941 151 0 10 chr9 87857479 87857784 -30004843 + AluSx SINE Alu 1 302 -10 300 286 98 9 chr9 87857800 87857912 -30004715 - MIR SINE MIR -109 153 32 25 0 0 0 chr9 87859094 87859119 -30003508 + AT_rich Low_complexity Low_complexity 1 25 0 276 334 74 58 chr9 87859153 87859533 -30003094 + L2 LINE L2 1519 1904 -1410 190 260 31 52 chr9 87859604 87859700 -30002927 + L2 LINE L2 2421 2514 -800 279 309 15 81 chr9 87859714 87859850 -30002777 + MIR3 SINE MIR 33 159 -49 449 285 86 49 chr9 87860512 87860749 -30001878 + MIR SINE MIR 6 250 -12 282 319 35 35 chr9 87860780 87860924 -30001703 + MIR SINE MIR 63 206 -56 2676 117 19 6 chr9 87861084 87861443 -30001184 + THE1B LTR MaLR 1 364 0 11942 88 19 29 chr9 87861443 87863038 -29999589 + THE1B-int LTR MaLR 1 1580 0 2708 111 17 8 chr9 87863038 87863399 -29999228 + THE1B LTR MaLR 1 364 0 639 219 44 12 chr9 87863402 87863562 -29999065 - MIR SINE MIR -25 237 73 210 219 16 78 chr9 87863692 87863756 -29998871 + MIR3 SINE MIR 112 171 -37 289 333 51 0 chr9 87864509 87864626 -29998001 + MIR SINE MIR 126 248 -14 256 219 14 41 chr9 87864656 87864729 -29997898 + L3 LINE CR1 1165 1235 -342 1507 161 115 0 chr9 87864999 87865260 -29997367 + AluSx SINE Alu 8 298 -14 1951 149 14 0 chr9 87865389 87865677 -29996950 - AluSx SINE Alu -20 292 1 331 262 28 69 chr9 87865922 87866067 -29996560 + MLT1J LTR MaLR 3 141 -370 410 223 252 7 chr9 87867094 87867233 -29995394 - MER5A DNA MER1_type 0 189 17 450 313 30 55 chr9 87867401 87867602 -29995025 - MIR3 SINE MIR -61 147 2 1252 306 90 16 chr9 87867684 87868763 -29993864 + L1M4 LINE L1 3652 4828 -1318 23 68 0 0 chr9 87869892 87869936 -29992691 + AT_rich Low_complexity Low_complexity 1 44 0 551 99 111 0 chr9 87870648 87870729 -29991898 + 5S rRNA rRNA 1 90 -31 927 228 25 21 chr9 87870810 87871051 -29991576 - L1MEc LINE L1 -6117 279 38 240 203 14 40 chr9 87871080 87871154 -29991473 + (TAGA)n Simple_repeat Simple_repeat 2 73 0 384 178 0 14 chr9 87872084 87872157 -29990470 + MER81 DNA DNA 2 73 -41 321 279 28 50 chr9 87872350 87872529 -29990098 - L1MC/D LINE L1 -2352 5456 5282 378 314 47 55 chr9 87874088 87874513 -29988114 - MLT1L LTR MaLR -2 610 167 257 238 32 0 chr9 87874562 87874625 -29988002 - MLT1L LTR MaLR -537 78 14 411 292 103 66 chr9 87874736 87874979 -29987648 + MIR SINE MIR 5 256 -6 835 188 15 71 chr9 87875032 87875229 -29987398 + MER5A DNA MER1_type 1 186 -3 661 286 152 33 chr9 87875394 87875723 -29986904 + L2 LINE L2 2946 3313 0 222 296 32 40 chr9 87876034 87876159 -29986468 - L3b LINE CR1 -244 1339 1216 284 295 21 0 chr9 87876317 87876412 -29986215 + MIR SINE MIR 48 144 -118 402 268 99 86 chr9 87876703 87877076 -29985551 + LTR16B LTR ERVL 35 412 -52 351 284 107 23 chr9 87877413 87877596 -29985031 - MIR SINE MIR -37 225 26 2137 99 0 27 chr9 87877623 87877917 -29984710 + AluSx SINE Alu 1 286 -26 221 331 63 16 chr9 87878423 87878550 -29984077 + L2 LINE L2 2934 3066 -206 225 346 62 17 chr9 87878653 87878832 -29983795 + L2 LINE L2 2683 2869 -445 200 29 0 59 chr9 87879029 87879063 -29983564 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 519 169 45 0 chr9 87879065 87879154 -29983473 - FLAM_A SINE Alu -28 114 22 236 204 19 0 chr9 87879169 87879223 -29983404 + (CACAC)n Simple_repeat Simple_repeat 2 56 0 1084 276 66 42 chr9 87880269 87880751 -29981876 - MLT1J LTR MaLR -17 494 1 372 296 88 19 chr9 87882186 87882345 -29980282 - MIR SINE MIR -73 189 20 436 273 84 7 chr9 87882795 87882949 -29979678 - MIR SINE MIR -16 246 81 3813 221 48 9 chr9 87882981 87883842 -29978785 - MER97a DNA MER1_type? 0 894 1 24 0 0 0 chr9 87884490 87884514 -29978113 + AT_rich Low_complexity Low_complexity 1 24 0 455 307 78 32 chr9 87884892 87885110 -29977517 - L3 LINE CR1 -106 1471 1244 30 45 0 0 chr9 87885627 87885671 -29976956 + AT_rich Low_complexity Low_complexity 1 44 0 287 65 22 0 chr9 87886255 87886301 -29976326 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 1817 164 4 0 chr9 87886305 87886586 -29976041 - AluJo SINE Alu -30 282 1 198 268 0 18 chr9 87886587 87886643 -29975984 - MIR SINE MIR -207 55 1 195 235 160 42 chr9 87887502 87887621 -29975006 - MIR SINE MIR -7 255 123 577 286 0 39 chr9 87887781 87887984 -29974643 - L2 LINE L2 -1 3312 3118 488 302 24 6 chr9 87888838 87889007 -29973620 + MIR SINE MIR 20 191 -71 2009 152 3 0 chr9 87889047 87889350 -29973277 + AluSx SINE Alu 1 304 -8 222 118 0 0 chr9 87889581 87889615 -29973012 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 180 281 56 11 chr9 87889640 87889729 -29972898 - L2 LINE L2 0 3272 3180 338 257 48 126 chr9 87889816 87890022 -29972605 - LTR67 LTR ERVL -7 550 361 503 309 45 0 chr9 87890288 87890466 -29972161 - MIR SINE MIR -14 248 63 604 290 74 46 chr9 87891515 87891950 -29970677 + MLT1J LTR MaLR 65 511 0 284 281 122 7 chr9 87891987 87892126 -29970501 + MIR SINE MIR 32 186 -76 1842 158 0 0 chr9 87892198 87892471 -29970156 - AluJo SINE Alu -30 282 10 2373 115 133 16 chr9 87892568 87892951 -29969676 + MSTA LTR MaLR 1 428 0 9986 153 20 4 chr9 87892951 87894576 -29968051 + MSTA-int LTR MaLR 1 1651 0 2512 128 70 8 chr9 87894576 87894974 -29967653 + MSTA LTR MaLR 1 423 -5 362 98 20 0 chr9 87895074 87895125 -29967502 + MSTA LTR MaLR 377 428 0 1166 200 14 0 chr9 87896711 87896926 -29965701 - MER20 DNA MER1_type 0 219 2 617 271 70 22 chr9 87896931 87897160 -29965467 + MIR SINE MIR 13 252 -10 324 333 40 0 chr9 87897260 87897386 -29965241 - L2 LINE L2 -9 3263 3133 498 207 112 0 chr9 87898276 87898392 -29964235 + MER5A DNA MER1_type 59 187 -2 587 320 116 17 chr9 87899155 87899508 -29963119 + Tigger8 DNA MER2_type 273 660 -6 320 137 0 0 chr9 87900767 87900818 -29961809 + L2 LINE L2 3263 3313 0 258 319 0 0 chr9 87900893 87900962 -29961665 - MIR3 SINE MIR -50 158 90 2068 190 36 40 chr9 87900972 87901182 -29961445 + MLT1C LTR MaLR 1 210 -257 2324 100 0 7 chr9 87901182 87901492 -29961135 + AluSx SINE Alu 1 308 -4 2068 190 36 40 chr9 87901492 87901750 -29960877 + MLT1C LTR MaLR 210 467 0 287 375 7 7 chr9 87902060 87902196 -29960431 - L2 LINE L2 -211 3061 2926 333 236 82 9 chr9 87903731 87903841 -29958786 + Charlie7 DNA MER1_type 2495 2612 0 739 333 111 14 chr9 87904011 87904506 -29958121 + L3 LINE CR1 983 1525 -52 361 236 8 81 chr9 87905279 87905402 -29957225 - MIR SINE MIR -70 192 79 219 327 101 48 chr9 87906208 87906456 -29956171 - L2 LINE L2 -36 3236 2976 220 269 77 67 chr9 87907268 87907372 -29955255 - L2 LINE L2 0 3313 3209 364 257 48 9 chr9 87907519 87907624 -29955003 + L2 LINE L2 3162 3270 -2 679 128 0 83 chr9 87907919 87908052 -29954575 - FRAM SINE Alu -15 161 40 201 306 103 0 chr9 87908510 87908618 -29954009 + MIR SINE MIR 45 162 -68 299 313 20 10 chr9 87909045 87909144 -29953483 + L2 LINE L2 2944 3043 -229 722 255 125 65 chr9 87909466 87909611 -29953016 + MLT1F LTR MaLR 72 207 -335 787 202 29 109 chr9 87909611 87909849 -29952778 + MER20 DNA MER1_type 1 219 0 722 255 125 65 chr9 87909849 87910158 -29952469 + MLT1F LTR MaLR 207 538 -4 222 118 0 0 chr9 87910218 87910252 -29952375 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1938 122 7 7 chr9 87910253 87910532 -29952095 - AluJb SINE Alu -33 279 1 213 200 0 55 chr9 87911180 87911235 -29951392 - L2 LINE L2 -3 3269 3218 1631 174 12 20 chr9 87911402 87911809 -29950818 - L1MA9 LINE L1 0 6312 5860 692 273 127 66 chr9 87912049 87912121 -29950506 - MLT1I LTR MaLR -8 401 335 2381 82 0 31 chr9 87912121 87912438 -29950189 + AluY SINE Alu 1 307 -4 692 273 127 66 chr9 87912438 87912743 -29949884 - MLT1I LTR MaLR -74 335 1 418 195 26 44 chr9 87913445 87913545 -29949082 - MIR SINE MIR -20 242 143 1584 109 0 51 chr9 87913545 87913801 -29948826 - AluSg/x SINE Alu -4 308 66 418 195 26 44 chr9 87913801 87913813 -29948814 - MIR SINE MIR -119 143 132 186 43 0 0 chr9 87913881 87913904 -29948723 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 825 165 0 0 chr9 87913904 87914025 -29948602 - FLAM_C SINE Alu -22 121 1 335 308 37 0 chr9 87914026 87914133 -29948494 - MIR SINE MIR -146 116 6 193 302 58 22 chr9 87915218 87915357 -29947270 + MIR SINE MIR 48 191 -71 268 329 30 16 chr9 87916525 87916669 -29945958 + MIR SINE MIR 33 175 -65 360 211 89 0 chr9 87916709 87916799 -29945828 + MIR SINE MIR 58 155 -107 520 219 63 18 chr9 87917253 87917460 -29945167 - MIR SINE MIR -46 216 3 2415 98 0 0 chr9 87918093 87918400 -29944227 + AluSq SINE Alu 1 307 -6 232 333 53 15 chr9 87918410 87918542 -29944085 - MIR SINE MIR -117 145 9 201 296 70 0 chr9 87919007 87919078 -29943549 + MIR SINE MIR 37 112 -96 340 258 184 55 chr9 87919320 87919537 -29943090 - MIR SINE MIR -12 250 6 1001 283 40 63 chr9 87919613 87920086 -29942541 - LTR16B LTR ERVL 0 464 3 2074 209 116 28 chr9 87920429 87920974 -29941653 + MLT1E LTR MaLR 1 593 0 276 216 36 29 chr9 87921446 87921585 -29941042 + (TA)n Simple_repeat Simple_repeat 2 141 0 281 160 0 0 chr9 87921587 87921637 -29940990 - MER4B-int LTR ERV1 -5562 1196 1147 542 266 120 68 chr9 87921807 87922355 -29940272 + L1ME4a LINE L1 5292 5868 -253 2477 84 0 0 chr9 87922382 87922679 -29939948 + AluSx SINE Alu 1 297 -15 326 95 0 81 chr9 87923420 87923494 -29939133 - L1MC2 LINE L1 -2 6342 6275 1508 144 58 38 chr9 87923502 87923793 -29938834 + AluJb SINE Alu 3 299 -13 252 283 225 0 chr9 87924066 87924186 -29938441 + MIR SINE MIR 103 249 -13 310 321 30 8 chr9 87925280 87925411 -29937216 + MIR SINE MIR 73 206 -56 352 271 14 69 chr9 87925458 87925602 -29937025 - L2 LINE L2 0 3272 3137 594 199 140 0 chr9 87925631 87925767 -29936860 - MER58B DNA MER1_type 0 341 187 1115 78 0 0 chr9 87925963 87926104 -29936523 + AluY SINE Alu 153 293 -18 1668 65 5 5 chr9 87926115 87926332 -29936295 + L1PA8 LINE L1 5956 6172 0 2168 108 27 0 chr9 87926349 87926645 -29935982 + AluSx SINE Alu 1 304 -8 403 228 70 18 chr9 87926664 87926778 -29935849 - MER103 DNA DNA -44 122 3 180 219 0 0 chr9 87927163 87927204 -29935423 + (CA)n Simple_repeat Simple_repeat 2 42 0 1209 128 11 0 chr9 87927741 87927928 -29934699 - MER5A DNA MER1_type 0 189 1 2438 184 71 31 chr9 87928788 87929364 -29933263 - L1MD2 LINE L1 -10 6349 5751 749 247 35 6 chr9 87929518 87929692 -29932935 - MER58A DNA MER1_type 0 224 46 1554 211 3 19 chr9 87930044 87930356 -29932271 + AluJb SINE Alu 1 307 -5 559 171 11 33 chr9 87930391 87930572 -29932055 + GA-rich Low_complexity Low_complexity 1 177 0 486 305 84 26 chr9 87930641 87930867 -29931760 + MIR SINE MIR 23 261 -1 275 143 36 36 chr9 87931541 87931597 -29931030 - MLT1L LTR MaLR -76 539 484 255 312 81 43 chr9 87931870 87932427 -29930200 - L1M4 LINE L1 -1085 5061 4484 235 191 0 0 chr9 87932822 87932864 -29929763 - MER116 DNA Mariner 0 80 39 311 338 95 31 chr9 87932967 87933387 -29929240 - L2 LINE L2 -2 3311 2865 1620 158 58 29 chr9 87933506 87933854 -29928773 + MER46B DNA MER2_type 4 236 0 450 262 75 59 chr9 87936551 87936738 -29925889 + MIR SINE MIR 70 259 -3 257 281 0 0 chr9 87937471 87937535 -29925092 + MIR SINE MIR 49 112 -150 185 313 45 0 chr9 87939096 87939163 -29923464 - MIR3 SINE MIR -45 163 94 464 262 87 29 chr9 87939177 87939349 -29923278 - MIR SINE MIR 0 262 81 243 284 32 11 chr9 87939440 87939535 -29923092 + MIR SINE MIR 112 208 -54 207 325 185 0 chr9 87939983 87940140 -29922487 + MER91A DNA MER1_type 1 186 -10 1112 206 94 165 chr9 87940552 87941096 -29921531 - MLT1F1 LTR MaLR 0 567 63 463 271 182 22 chr9 87941110 87941335 -29921292 + MLT1J LTR MaLR 235 495 -16 297 280 80 0 chr9 87941408 87941508 -29921119 - MIR SINE MIR -67 141 34 337 323 0 24 chr9 87942693 87942817 -29919810 - MIR SINE MIR -59 149 29 656 277 118 60 chr9 87943020 87943251 -29919376 - MER102b DNA MER1_type -1095 333 78 1942 146 3 10 chr9 87943251 87943545 -29919082 - AluJo SINE Alu -20 292 1 656 277 118 60 chr9 87943545 87943627 -29919000 - MER102b DNA MER1_type -1350 78 2 275 179 0 18 chr9 87943747 87943803 -29918824 + L2 LINE L2 3005 3059 -254 1233 288 40 17 chr9 87943805 87944152 -29918475 + MLT1J LTR MaLR 16 370 -141 5846 75 42 12 chr9 87944152 87944995 -29917632 + L1P3 LINE L1 920 1776 -4685 * 36639 96 15 8 chr9 87944983 87951082 -29911545 + L1PA7 LINE L1 13 6149 -5 489 226 127 32 chr9 87951210 87951431 -29911196 + L2 LINE L2 3063 3304 -9 228 278 235 5 chr9 87952534 87952721 -29909906 - MIR SINE MIR -13 249 20 1187 198 104 84 chr9 87953198 87953385 -29909242 + MLT1D LTR MaLR 5 187 -318 2178 139 0 0 chr9 87953385 87953687 -29908940 + AluSx SINE Alu 1 302 -10 1236 170 5 0 chr9 87953692 87953898 -29908729 + L1MB1 LINE L1 5962 6168 0 1187 198 104 84 chr9 87953898 87954193 -29908434 + MLT1D LTR MaLR 190 503 -2 21 0 0 0 chr9 87955421 87955442 -29907185 + AT_rich Low_complexity Low_complexity 1 21 0 612 276 168 28 chr9 87956399 87956786 -29905841 + L1MCc LINE L1 25 465 -5958 1456 265 51 26 chr9 87957144 87957338 -29905289 + L1MCc LINE L1 2594 2782 -4340 1124 185 58 0 chr9 87957338 87957543 -29905084 + MER20 DNA MER1_type 2 218 -1 1456 265 51 26 chr9 87957543 87957918 -29904709 + L1MCc LINE L1 2782 3177 -3945 470 202 32 16 chr9 87957948 87958072 -29904555 + L1PA16 LINE L1 6025 6150 -16 * 2086 265 72 4 chr9 87958058 87958755 -29903872 + L1MCc LINE L1 3135 3878 -3063 11282 167 37 31 chr9 87958921 87960881 -29901746 + L1M1 LINE L1 16 1963 -5602 1512 186 0 8 chr9 87960881 87961145 -29901482 + AluJb SINE Alu 42 303 -9 11282 167 37 31 chr9 87961145 87961253 -29901374 + L1M1 LINE L1 1963 2069 -5496 2161 134 16 0 chr9 87961253 87961558 -29901069 + AluSx SINE Alu 1 310 -2 11282 167 37 31 chr9 87961558 87961693 -29900934 + L1M1 LINE L1 2069 2202 -5363 1814 154 21 4 chr9 87961693 87961972 -29900655 + AluSx SINE Alu 7 290 -22 11282 167 37 31 chr9 87961972 87963647 -29898980 + L1M1 LINE L1 2202 4284 -3281 655 12 12 0 chr9 87963649 87963731 -29898896 + AluY SINE Alu 2 84 -226 929 61 9 0 chr9 87963832 87963947 -29898680 - AluSq/x SINE Alu -196 116 1 202 348 58 14 chr9 87964131 87964269 -29898358 - MIR3 SINE MIR -62 146 3 342 0 0 0 chr9 87964336 87964374 -29898253 + (TA)n Simple_repeat Simple_repeat 2 39 0 279 0 0 0 chr9 87964374 87964405 -29898222 + (T)n Simple_repeat Simple_repeat 1 31 0 370 227 14 71 chr9 87965261 87965402 -29897225 - L1ME3 LINE L1 -9 6153 6021 2324 113 3 0 chr9 87965515 87965825 -29896802 - AluSq SINE Alu 0 313 3 566 272 25 39 chr9 87966525 87966775 -29895852 - MIR SINE MIR -12 250 4 691 216 144 115 chr9 87967560 87968004 -29894623 - LTR16A1 LTR ERVL 0 457 1 233 296 65 9 chr9 87968139 87968247 -29894380 + MIR SINE MIR 28 141 -121 185 182 0 0 chr9 87968383 87968416 -29894211 - MIR SINE MIR -107 155 123 2432 69 3 10 chr9 87968630 87968934 -29893693 + AluY SINE Alu 1 302 -9 2156 140 47 0 chr9 87968948 87969312 -29893315 + L1MC1 LINE L1 5934 6314 -19 187 260 247 0 chr9 87969327 87969477 -29893150 - MIR SINE MIR -6 256 70 183 100 0 0 chr9 87969979 87970009 -29892618 + (TTCA)n Simple_repeat Simple_repeat 2 31 0 270 207 24 49 chr9 87970493 87970575 -29892052 + MER96B DNA MER1_type? 8 87 -330 285 29 0 0 chr9 87970576 87970610 -29892017 + (CA)n Simple_repeat Simple_repeat 2 35 0 429 167 0 0 chr9 87970611 87970689 -29891938 + (TA)n Simple_repeat Simple_repeat 1 78 0 461 116 43 7 chr9 87970724 87970862 -29891765 + (TA)n Simple_repeat Simple_repeat 1 143 0 1702 135 4 23 chr9 87970881 87971140 -29891487 - AluSx SINE Alu -58 254 1 478 191 186 29 chr9 87971140 87971344 -29891283 - MER96B DNA MER1_type? -80 337 102 317 275 35 130 chr9 87971344 87971660 -29890967 - L2 LINE L2 -101 3171 2886 2124 92 4 7 chr9 87971707 87972011 -29890616 + AluSg SINE Alu 1 303 0 529 233 48 44 chr9 87972213 87972419 -29890208 - L1M4 LINE L1 -1595 4551 4345 2772 191 72 81 chr9 87972451 87973343 -29889284 - L1ME2 LINE L1 -17 6147 5264 3888 229 132 37 chr9 87973539 87973793 -29888834 - L1ME2 LINE L1 -1236 4910 4682 2277 98 3 3 chr9 87973793 87974089 -29888538 + AluSp SINE Alu 1 296 -17 3888 229 132 37 chr9 87974089 87974324 -29888303 - L1ME2 LINE L1 -1464 4682 4471 2407 84 0 0 chr9 87974324 87974620 -29888007 - AluY SINE Alu -15 296 1 3888 229 132 37 chr9 87974620 87975669 -29886958 - L1ME2 LINE L1 -1675 4471 3196 2072 120 0 10 chr9 87975669 87975960 -29886667 - AluSc SINE Alu -21 288 1 3888 229 132 37 chr9 87975960 87976097 -29886530 - L1ME2 LINE L1 -2950 3196 3073 1268 71 33 0 chr9 87976103 87976285 -29886342 - L1MA3 LINE L1 -1 6304 6117 1006 119 0 79 chr9 87976286 87976463 -29886164 - THE1B LTR MaLR -8 356 194 11966 154 42 21 chr9 87976463 87979075 -29883552 - L1MA3 LINE L1 -755 5391 2851 7799 29 0 0 chr9 87979076 87980350 -29882277 - L1PA3 LINE L1 -5 6150 4877 2169 18 21 0 chr9 87980350 87980635 -29881992 + L1P LINE L1 3797 4060 -2086 267 348 7 29 chr9 87980812 87980950 -29881677 + MLT1K LTR MaLR 448 582 -6 311 342 34 0 chr9 87981191 87981308 -29881319 + L2 LINE L2 3134 3254 -18 * 410 210 51 58 chr9 87981294 87981432 -29881195 - MIR SINE MIR -52 210 74 2233 94 19 10 chr9 87981825 87982133 -29880494 - AluSq SINE Alu -2 311 1 342 255 25 102 chr9 87982226 87982461 -29880166 + L2 LINE L2 2842 3058 -214 837 222 74 0 chr9 87983388 87983577 -29879050 + MLT1A1 LTR MaLR 163 365 0 2980 178 94 24 chr9 87983598 87984277 -29878350 + LTR8A LTR ERV1 1 727 0 2069 196 63 73 chr9 87984929 87985547 -29877080 + LTR9 LTR ERV1 1 612 0 403 222 136 34 chr9 87985785 87985961 -29876666 - MIR SINE MIR -49 213 20 196 351 26 0 chr9 87986397 87986474 -29876153 - MIR3 SINE MIR -15 193 115 270 297 90 13 chr9 87987230 87987385 -29875242 - MIR SINE MIR -11 251 85 5809 106 32 2 chr9 87987607 87989211 -29873416 + L1PA15 LINE L1 4525 6155 -10 2851 233 35 39 chr9 87989221 87989235 -29873392 + L1M1 LINE L1 3554 3567 -3998 2424 145 41 5 chr9 87989235 87989648 -29872979 + MSTA LTR MaLR 1 428 0 2851 233 35 39 chr9 87989648 87990511 -29872116 + L1M1 LINE L1 3567 4444 -3121 694 215 60 30 chr9 87990921 87991186 -29871441 + L1M1 LINE L1 4441 4713 -2852 444 141 12 35 chr9 87991191 87991276 -29871351 + AluJ/FLAM SINE Alu 2 84 -228 1630 269 85 36 chr9 87991685 87991903 -29870724 + L2 LINE L2 2322 2528 -785 2312 86 10 0 chr9 87991903 87992195 -29870432 - AluSc SINE Alu -14 295 1 1630 269 85 36 chr9 87992195 87992850 -29869777 + L2 LINE L2 2528 3245 -68 21 0 0 0 chr9 87992873 87992894 -29869733 + AT_rich Low_complexity Low_complexity 1 21 0 232 286 55 44 chr9 87994309 87994400 -29868227 - MIR SINE MIR -162 100 9 331 330 6 45 chr9 87995818 87996182 -29866445 + GA-rich Low_complexity Low_complexity 1 349 0 369 234 156 21 chr9 87996248 87996389 -29866238 + MER5A DNA MER1_type 30 189 0 205 275 0 58 chr9 87996704 87996773 -29865854 + L2 LINE L2 3198 3262 -10 332 283 43 11 chr9 87997407 87997499 -29865128 - L2 LINE L2 -10 3303 3209 2881 128 2 9 chr9 87997694 87998131 -29864496 - MER57B LTR ERV1 0 434 1 580 198 32 24 chr9 87998362 87998488 -29864139 + MLT1A1 LTR MaLR 1 127 -238 432 91 30 0 chr9 87998805 87998871 -29863756 + Tigger2 DNA MER2_type 1 68 -2650 2498 134 53 12 chr9 87998871 87999059 -29863568 + Tigger2 DNA MER2_type 2291 2470 -248 1909 142 3 41 chr9 87999059 87999377 -29863250 - AluSx SINE Alu -6 306 1 2498 134 53 12 chr9 87999377 87999599 -29863028 + Tigger2 DNA MER2_type 2470 2718 0 514 304 87 49 chr9 88000134 88000525 -29862102 - L2 LINE L2 0 3313 2908 358 298 116 5 chr9 88000816 88001014 -29861613 + MIR SINE MIR 43 262 0 233 318 11 11 chr9 88001175 88001263 -29861364 + MIR SINE MIR 36 123 -85 189 0 0 0 chr9 88001265 88001286 -29861341 + (A)n Simple_repeat Simple_repeat 1 21 0 439 245 73 39 chr9 88001447 88001625 -29861002 + MER20B DNA MER1_type 36 219 0 449 197 225 42 chr9 88002089 88002361 -29860266 + MLT1A1 LTR MaLR 231 555 0 2042 246 61 30 chr9 88002744 88003304 -29859323 + MLT1E LTR MaLR 1 577 -16 21 0 0 0 chr9 88003384 88003405 -29859222 + AT_rich Low_complexity Low_complexity 1 21 0 1540 184 70 21 chr9 88003529 88003856 -29858771 - MER2 DNA MER2_type 0 344 2 413 314 92 13 chr9 88003861 88004100 -29858527 - L1MC4a LINE L1 -1886 5922 5665 232 359 71 6 chr9 88004108 88004278 -29858349 - L1MC4a LINE L1 -2192 5616 5436 307 282 68 17 chr9 88004846 88004963 -29857664 - MIR SINE MIR -82 180 58 313 315 0 46 chr9 88005062 88005192 -29857435 + MIR3 SINE MIR 83 206 -2 471 276 32 22 chr9 88005804 88005989 -29856638 - L1ME4a LINE L1 -180 5941 5755 2366 83 0 29 chr9 88006038 88006351 -29856276 + AluY SINE Alu 3 306 -5 886 221 50 78 chr9 88006381 88006766 -29855861 - MLT1G1 LTR MaLR 0 595 151 2187 101 0 3 chr9 88006766 88007054 -29855573 + AluSq SINE Alu 10 296 -17 886 221 50 78 chr9 88007054 88007131 -29855496 - MLT1G1 LTR MaLR -444 151 73 216 194 42 14 chr9 88008932 88009004 -29853623 + (TGGG)n Simple_repeat Simple_repeat 2 75 0 228 273 15 0 chr9 88009205 88009271 -29853356 + L2 LINE L2 3246 3312 -1 225 288 17 0 chr9 88009299 88009358 -29853269 + GA-rich Low_complexity Low_complexity 3 62 0 580 258 60 18 chr9 88009434 88009651 -29852976 - MIR SINE MIR -17 245 20 2899 193 37 48 chr9 88009751 88010456 -29852171 + MER72 LTR ERV1 26 722 0 373 319 9 0 chr9 88010735 88010848 -29851779 - L2 LINE L2 -540 2774 2661 202 264 206 7 chr9 88011100 88011255 -29851372 - L2 LINE L2 -163 3109 2924 349 263 76 0 chr9 88013240 88013365 -29849262 - MIR SINE MIR -68 140 1 2452 72 0 3 chr9 88014936 88015242 -29847385 + AluY SINE Alu 2 306 -5 414 292 124 15 chr9 88015275 88015412 -29847215 + MIR3 SINE MIR 14 165 -43 1491 198 28 100 chr9 88015432 88015675 -29846952 - MER63B DNA MER1_type -626 436 242 874 198 125 5 chr9 88015675 88015867 -29846760 - MER58C DNA MER1_type 0 215 1 1491 198 28 100 chr9 88015867 88016093 -29846534 - MER63B DNA MER1_type -820 242 1 242 127 4 26 chr9 88017186 88017242 -29845385 + L1ME3A LINE L1 5388 5442 -722 * 939 202 65 16 chr9 88017240 88017487 -29845140 + L1MCc LINE L1 35 293 -6130 856 132 31 25 chr9 88017488 88017647 -29844980 - L1MA4 LINE L1 -1 6299 6140 2488 241 63 20 chr9 88017770 88018468 -29844159 + L1ME3A LINE L1 5436 6163 -7 1503 175 84 10 chr9 88018642 88018939 -29843688 - L1MD2 LINE L1 -15 6344 6026 1297 190 51 0 chr9 88018938 88019191 -29843436 + L1MD2 LINE L1 5761 6026 -333 * 224 285 89 42 chr9 88020030 88020244 -29842383 - L2 LINE L2 -222 3050 2827 1990 161 39 11 chr9 88021150 88021505 -29841122 - MLT1A1 LTR MaLR 0 365 1 297 291 93 13 chr9 88022467 88022618 -29840009 + L2 LINE L2 2878 3040 -232 247 239 14 42 chr9 88022776 88022847 -29839780 + L2 LINE L2 3205 3273 -40 218 307 63 16 chr9 88023101 88023228 -29839399 + MIR SINE MIR 76 208 -54 2020 130 72 23 chr9 88023352 88023699 -29838928 + THE1B LTR MaLR 1 364 0 701 229 33 0 chr9 88023785 88023938 -29838689 + L1ME3A LINE L1 5999 6156 -14 1954 188 177 133 chr9 88023975 88024952 -29837675 + LTR28 LTR ERV1 1 1020 0 35499 160 21 27 chr9 88024955 88031937 -29830690 + HUERS-P2 LTR ERV1 6 7090 -1 2111 187 249 104 chr9 88031946 88032837 -29829790 + LTR28 LTR ERV1 1 1020 0 1724 151 7 26 chr9 88032999 88033304 -29829323 + AluJb SINE Alu 3 301 -11 1142 151 107 13 chr9 88033655 88033880 -29828747 + LTR8A LTR ERV1 1 246 -481 689 150 44 12 chr9 88034041 88034201 -29828426 - MER3 DNA MER1_type 0 2399 2235 546 223 0 15 chr9 88034205 88034335 -29828292 - MER3 DNA MER1_type -41 168 41 3132 74 14 27 chr9 88034434 88034878 -29827749 + L1PA8 LINE L1 5735 6172 0 386 274 72 39 chr9 88034975 88035128 -29827499 + MIR SINE MIR 41 198 -64 267 368 123 0 chr9 88035171 88035326 -29827301 - MIR SINE MIR -78 184 11 1176 240 34 54 chr9 88035877 88036264 -29826363 - MLT1C LTR MaLR -88 379 1 1768 235 141 105 chr9 88036272 88037100 -29825527 + L2 LINE L2 1542 2502 -812 335 266 13 13 chr9 88037100 88037179 -29825448 - LTR67 LTR ERVL -363 194 116 1768 235 141 105 chr9 88037179 88037446 -29825181 + L2 LINE L2 2502 2758 -556 2173 119 0 0 chr9 88037604 88037907 -29824720 + AluSq SINE Alu 1 303 -10 478 263 201 21 chr9 88037933 88038222 -29824405 + L1MC4 LINE L1 7702 8042 0 1822 113 0 4 chr9 88038228 88038485 -29824142 + AluSx SINE Alu 1 256 -56 7076 121 72 48 chr9 88038588 88039765 -29822862 - THE1B-int LTR MaLR -374 1206 1 1837 132 4 0 chr9 88039765 88040023 -29822604 - THE1B LTR MaLR 0 364 106 2854 201 54 20 chr9 88040171 88040818 -29821809 + LTR65 LTR ERV1 1 669 0 311 80 40 0 chr9 88041882 88041932 -29820695 + AluSx SINE Alu 248 299 -2 22 56 0 0 chr9 88042047 88042083 -29820544 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr9 88042103 88042124 -29820503 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 88042279 88042300 -29820327 + AT_rich Low_complexity Low_complexity 1 21 0 21 95 0 0 chr9 88042645 88042708 -29819919 + AT_rich Low_complexity Low_complexity 1 63 0 6118 122 33 7 chr9 88042817 88043721 -29818906 + L1PB1 LINE L1 4859 5806 -345 324 0 0 0 chr9 88043721 88043757 -29818870 + (CA)n Simple_repeat Simple_repeat 2 37 0 6118 122 33 7 chr9 88043757 88044113 -29818514 + L1PB1 LINE L1 5806 6151 0 1953 160 47 0 chr9 88044270 88044608 -29818019 - MER46B DNA MER2_type -5 231 3 1370 293 70 64 chr9 88045078 88045861 -29816766 + MER110-int LTR ERV1 2730 3517 -1130 1006 151 0 0 chr9 88046470 88046629 -29815998 + AluSg/x SINE Alu 151 309 -1 2022 122 0 0 chr9 88047529 88047817 -29814810 - AluSx SINE Alu -24 288 1 1393 158 132 8 chr9 88048593 88048859 -29813768 + AluJb SINE Alu 1 299 -3 279 298 175 0 chr9 88048972 88049143 -29813484 - L1MC4a LINE L1 -1135 6673 6473 794 136 30 15 chr9 88049160 88049292 -29813335 - AluJb SINE Alu -177 135 2 448 243 120 50 chr9 88049305 88049663 -29812964 - L1MC4a LINE L1 -1351 6457 6075 348 277 71 0 chr9 88049812 88049924 -29812703 + MIR SINE MIR 92 211 -51 975 236 126 44 chr9 88050823 88051259 -29811368 - MLT1J LTR MaLR -37 474 3 345 306 41 25 chr9 88052209 88052330 -29810297 + MIR SINE MIR 21 143 -65 2711 220 38 38 chr9 88052417 88053054 -29809573 + MER21B LTR ERV1 1 637 -226 371 139 42 14 chr9 88053054 88053126 -29809501 + MER84 LTR ERVI 1 74 -433 3201 104 21 48 chr9 88053126 88053512 -29809115 + MER84 LTR ERV1 2 372 -135 1989 135 0 3 chr9 88053512 88053815 -29808812 - AluSx SINE Alu -10 302 1 3201 104 21 48 chr9 88053815 88053948 -29808679 + MER84 LTR ERV1 372 507 0 625 254 40 40 chr9 88053948 88054125 -29808502 + MER21B LTR ERV1 633 809 -54 277 87 0 22 chr9 88054446 88054492 -29808135 + L1P4 LINE L1 5403 5447 -721 1087 122 0 0 chr9 88054593 88054749 -29807878 + AluSq SINE Alu 142 297 -16 1658 145 24 14 chr9 88055354 88055643 -29806984 - AluSx SINE Alu -18 294 3 651 187 15 30 chr9 88055680 88055814 -29806813 - MIR SINE MIR -14 248 117 236 278 0 0 chr9 88055896 88055950 -29806677 + L2 LINE L2 3007 3060 -212 407 138 9 92 chr9 88056013 88056122 -29806505 + MER53 DNA DNA 89 188 -1 854 102 0 0 chr9 88056276 88056394 -29806233 + AluSg/x SINE Alu 178 295 -14 193 284 61 95 chr9 88056509 88056657 -29805970 + MIR SINE MIR 120 262 0 1847 144 147 11 chr9 88057049 88057423 -29805204 - MSTA LTR MaLR -3 425 1 259 286 8 13 chr9 88057554 88057675 -29804952 + MER5A DNA MER1_type 14 185 -4 628 215 16 8 chr9 88057760 88057881 -29804746 - MER5B DNA MER1_type -3 175 54 320 100 0 20 chr9 88057920 88057970 -29804657 - MSTA LTR MaLR -379 49 1 1901 150 7 0 chr9 88058161 88058461 -29804166 - AluJb SINE Alu -10 302 1 292 213 46 56 chr9 88059469 88059577 -29803050 + MIR SINE MIR 100 206 -56 326 316 38 8 chr9 88059679 88059812 -29802815 - MIR SINE MIR -50 212 76 532 216 24 56 chr9 88059894 88060019 -29802608 - MER5B DNA MER1_type -4 174 54 4443 156 43 55 chr9 88060049 88060515 -29802112 - L1MD1 LINE L1 -1 6241 5771 1573 173 14 24 chr9 88060515 88060810 -29801817 - AluJo SINE Alu -20 292 1 4443 156 43 55 chr9 88060810 88061412 -29801215 - L1MD1 LINE L1 -471 5771 5202 2065 83 60 20 chr9 88061412 88061713 -29800914 - AluSp SINE Alu 0 313 1 4443 156 43 55 chr9 88061713 88061728 -29800899 - L1MD1 LINE L1 -1040 5202 5188 2527 102 3 25 chr9 88061778 88062140 -29800487 - THE1A LTR MaLR -1 354 1 11690 101 1 8 chr9 88062140 88063302 -29799325 - THE1A-int LTR MaLR 0 1580 428 1969 103 33 0 chr9 88063302 88063594 -29799033 + AluSg SINE Alu 1 301 0 11690 101 1 8 chr9 88063594 88063992 -29798635 - THE1A-int LTR MaLR -1152 428 29 677 129 0 10 chr9 88063998 88064099 -29798528 - THE1A LTR MaLR 0 364 265 254 91 0 0 chr9 88064093 88064126 -29798501 - Alu SINE Alu -267 35 3 * 2113 111 13 0 chr9 88064158 88064465 -29798162 + AluSq SINE Alu 1 311 -2 478 235 56 47 chr9 88064821 88064996 -29797631 + MIR SINE MIR 36 210 -52 348 342 34 0 chr9 88064982 88065099 -29797528 - L2 LINE L2 -18 3254 3134 * 661 317 108 47 chr9 88065340 88065832 -29796795 - MLT1K LTR MaLR -6 582 61 250 299 0 0 chr9 88066696 88066763 -29795864 + MIR SINE MIR 72 138 -70 234 314 0 0 chr9 88066934 88067004 -29795623 - Charlie8 DNA MER1_type -2345 72 3 234 300 138 0 chr9 88067587 88067667 -29794960 + L2 LINE L2 3167 3257 -15 291 243 118 46 chr9 88067724 88067802 -29794825 + MIR3 SINE MIR 34 105 -103 1831 150 7 3 chr9 88067802 88068102 -29794525 - AluSx SINE Alu -11 301 1 291 243 118 46 chr9 88068102 88068175 -29794452 + MIR3 SINE MIR 105 196 -12 201 173 58 0 chr9 88070500 88070552 -29792075 - MIR SINE MIR -73 135 81 406 282 82 78 chr9 88070805 88071133 -29791494 - L2 LINE L2 -214 3058 2701 2286 88 0 10 chr9 88071133 88071441 -29791186 + AluSg1 SINE Alu 1 305 -4 406 282 82 78 chr9 88071441 88071623 -29791004 - L2 LINE L2 -571 2701 2521 199 228 105 0 chr9 88072393 88072450 -29790177 + MER5A DNA MER1_type 98 160 -29 2431 203 34 0 chr9 88073276 88073750 -29788877 + MLT1D LTR MaLR 16 505 0 483 308 128 0 chr9 88074587 88074821 -29787806 + L2 LINE L2 2648 2911 -403 636 261 141 20 chr9 88074821 88075020 -29787607 - MER58A DNA MER1_type -1 223 1 536 234 382 26 chr9 88075021 88075325 -29787302 + L2 LINE L2 2902 3313 0 182 276 345 17 chr9 88078020 88078136 -29784491 + MIR SINE MIR 21 174 -88 529 156 115 16 chr9 88078647 88078769 -29783858 - Charlie4 DNA MER1_type -5 1956 1823 926 207 13 48 chr9 88079075 88079302 -29783325 + MER20 DNA MER1_type 1 219 0 184 200 0 25 chr9 88079331 88079371 -29783256 - MIR SINE MIR -78 130 92 28 0 0 0 chr9 88079904 88079932 -29782695 + AT_rich Low_complexity Low_complexity 1 28 0 1663 118 103 15 chr9 88079994 88080282 -29782345 - AluSq SINE Alu 0 311 1 928 166 33 0 chr9 88081173 88081354 -29781273 + MSTB1 LTR MaLR 1 187 -245 538 147 0 72 chr9 88082661 88082799 -29779828 + L1ME2 LINE L1 6037 6158 -6 2180 141 31 34 chr9 88083145 88083212 -29779415 - Tigger2 DNA MER2_type 0 2718 2652 1955 132 45 3 chr9 88083212 88083500 -29779127 - AluJb SINE Alu -12 300 1 2180 141 31 34 chr9 88083500 88083850 -29778777 - Tigger2 DNA MER2_type -66 2652 2302 6849 109 39 26 chr9 88083953 88085085 -29777542 - Tigger2 DNA MER2_type -271 2447 1302 5022 118 26 10 chr9 88085084 88085888 -29776739 - Tigger2 DNA MER2_type -1605 1113 297 * 2678 35 0 3 chr9 88086008 88086320 -29776307 + AluY SINE Alu 1 311 0 744 139 0 0 chr9 88087223 88087338 -29775289 + FLAM_C SINE Alu 1 115 -18 350 308 41 7 chr9 88087884 88088030 -29774597 + HsTC2 DNA Tc2 736 886 -1012 1590 167 30 53 chr9 88089102 88089402 -29773225 + AluJo SINE Alu 6 298 -14 1717 143 20 17 chr9 88089475 88089768 -29772859 + AluJb SINE Alu 1 294 -18 788 226 134 21 chr9 88090211 88090494 -29772133 + LTR50 LTR ERVL 481 795 0 321 178 0 0 chr9 88091868 88091930 -29770697 - AluSp SINE Alu -120 183 131 242 28 0 28 chr9 88093532 88093568 -29769059 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 788 239 41 38 chr9 88094223 88094541 -29768086 - L1MC4 LINE L1 -4 8038 7720 220 294 108 20 chr9 88095524 88095626 -29767001 - MER5A DNA MER1_type -24 165 55 1614 171 27 20 chr9 88095672 88095964 -29766663 - AluJo SINE Alu 0 312 19 1100 224 37 0 chr9 88095964 88096259 -29766368 - L1M4 LINE L1 -817 5329 5024 1725 194 0 10 chr9 88096267 88096556 -29766071 - AluJo SINE Alu -26 286 1 230 267 0 0 chr9 88096690 88096750 -29765877 + L1ME1 LINE L1 1841 1900 -4496 3337 227 66 22 chr9 88096752 88097889 -29764738 + L1ME1 LINE L1 1968 3181 -3034 1750 173 10 13 chr9 88097889 88098201 -29764426 + AluJo SINE Alu 1 311 -1 3337 227 66 22 chr9 88098201 88098682 -29763945 + L1ME1 LINE L1 3181 3639 -2576 2957 204 38 15 chr9 88098694 88099347 -29763280 - MER76 LTR ERV -16 672 5 1665 209 64 99 chr9 88099349 88099761 -29762866 + L1ME1 LINE L1 3643 4068 -2147 1134 201 33 0 chr9 88099761 88099975 -29762652 - MER58A DNA MER1_type 0 224 4 1665 209 64 99 chr9 88099975 88100017 -29762610 + L1ME1 LINE L1 4068 4110 -2105 2060 147 0 0 chr9 88100017 88100309 -29762318 + AluJb SINE Alu 1 292 -20 1665 209 64 99 chr9 88100309 88100682 -29761945 + L1ME1 LINE L1 4110 4442 -1773 843 231 11 0 chr9 88100682 88100868 -29761759 + MLT1F1 LTR MaLR 372 559 -8 2290 216 100 11 chr9 88100891 88101502 -29761125 + L1ME1 LINE L1 5557 6221 -14 192 242 88 66 chr9 88104675 88104766 -29757861 - L2 LINE L2 0 3313 3221 436 327 89 5 chr9 88104900 88105114 -29757513 - L2 LINE L2 -272 3041 2810 233 288 27 0 chr9 88105138 88105211 -29757416 - L2 LINE L2 -60 3253 3179 366 300 191 19 chr9 88105534 88105744 -29756883 + MIR SINE MIR 7 252 -10 222 296 0 25 chr9 88106278 88106359 -29756268 + MER5A DNA MER1_type 89 167 -22 368 245 53 26 chr9 88106413 88106558 -29756069 + MER5A DNA MER1_type 1 161 -28 21 0 0 0 chr9 88107284 88107305 -29755322 + AT_rich Low_complexity Low_complexity 1 21 0 759 260 0 6 chr9 88107312 88107481 -29755146 + MER8 DNA MER2_type 1 168 -71 1353 150 79 8 chr9 88108083 88108336 -29754291 + AluJb SINE Alu 29 299 -13 256 379 41 12 chr9 88108622 88108791 -29753836 - L2 LINE L2 -439 2875 2702 21 0 0 0 chr9 88108823 88108844 -29753783 + AT_rich Low_complexity Low_complexity 1 21 0 2384 92 0 0 chr9 88109066 88109369 -29753258 + AluY SINE Alu 1 303 -8 1758 213 25 18 chr9 88110510 88110998 -29751629 + L1ME2 LINE L1 5654 6144 -20 245 283 34 52 chr9 88111035 88111268 -29751359 + L1MC4 LINE L1 7805 8033 -9 2184 109 10 20 chr9 88112107 88112409 -29750218 + AluSx SINE Alu 3 301 -11 771 108 52 0 chr9 88113844 88114078 -29748549 + (CA)n Simple_repeat Simple_repeat 1 246 0 249 336 123 0 chr9 88114234 88114356 -29748271 + L3b LINE CR1 1357 1493 -90 343 285 190 20 chr9 88115201 88115401 -29747226 + L2 LINE L2 2864 3097 -216 193 317 17 75 chr9 88115494 88115614 -29747013 + L2 LINE L2 3192 3304 -9 329 299 141 11 chr9 88115701 88115878 -29746749 - MIR SINE MIR -57 205 6 2210 38 4 0 chr9 88116176 88116442 -29746185 - L1PA5 LINE L1 -8 6146 5880 252 0 0 0 chr9 88116915 88116943 -29745684 + (CA)n Simple_repeat Simple_repeat 2 29 0 847 191 7 7 chr9 88117336 88117483 -29745144 - AluJb SINE Alu -13 299 153 811 296 45 5 chr9 88117688 88117911 -29744716 + MIR SINE MIR 20 251 -11 1171 127 21 0 chr9 88118709 88118898 -29743729 - Tigger3(Golem) DNA MER2_type -1 3028 2836 21 82 0 0 chr9 88120572 88120621 -29742006 + AT_rich Low_complexity Low_complexity 1 49 0 378 359 46 0 chr9 88120683 88120814 -29741813 + MIR SINE MIR 2 138 -124 942 252 103 53 chr9 88121830 88122473 -29740154 + L2 LINE L2 2645 3292 -21 234 301 9 71 chr9 88122733 88122846 -29739781 + L2 LINE L2 2553 2658 -656 452 152 13 0 chr9 88122954 88123033 -29739594 + L1MB7 LINE L1 6022 6101 -83 215 130 0 43 chr9 88123033 88123079 -29739548 + (CATATA)n Simple_repeat Simple_repeat 4 47 0 250 103 0 0 chr9 88123079 88123118 -29739509 + L1MB8 LINE L1 6103 6141 -37 185 285 161 39 chr9 88123603 88123733 -29738894 + MIR3 SINE MIR 1 146 -62 2400 82 0 19 chr9 88125842 88126158 -29736469 - AluY SINE Alu -1 310 1 22 56 0 0 chr9 88126542 88126578 -29736049 + AT_rich Low_complexity Low_complexity 1 36 0 1401 111 5 0 chr9 88126759 88126949 -29735678 - AluSg/x SINE Alu -25 287 97 343 284 154 56 chr9 88127004 88127166 -29735461 + MER5B DNA MER1_type 1 178 0 2263 68 10 0 chr9 88127218 88127512 -29735115 + AluY SINE Alu 1 297 -14 371 286 149 6 chr9 88127543 88127704 -29734923 + L1ME LINE L1 5641 5824 -297 2239 76 7 17 chr9 88127724 88128026 -29734601 - AluY SINE Alu -12 299 1 2078 158 57 5 chr9 88128347 88128733 -29733894 + MLT2C2 LTR ERVL 8 413 -51 984 182 0 157 chr9 88128802 88129082 -29733545 - MER8 DNA MER2_type 0 239 4 391 256 106 105 chr9 88129655 88129960 -29732667 + L1MC5 LINE L1 7665 8009 -33 21 0 0 0 chr9 88130178 88130199 -29732428 + AT_rich Low_complexity Low_complexity 1 21 0 2396 87 3 0 chr9 88130284 88130584 -29732043 + AluSp SINE Alu 1 301 -12 216 67 0 0 chr9 88130857 88130887 -29731740 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 429 279 44 82 chr9 88131362 88131545 -29731082 + MER91A DNA MER1_type 4 179 -17 219 300 0 0 chr9 88132150 88132200 -29730427 + L3 LINE CR1 1509 1558 -19 23 33 0 0 chr9 88132293 88132323 -29730304 + AT_rich Low_complexity Low_complexity 1 30 0 2190 136 0 0 chr9 88133379 88133680 -29728947 - AluSx SINE Alu -11 301 1 333 151 14 27 chr9 88134130 88134203 -29728424 - L1MB8 LINE L1 0 6178 6107 1450 167 7 17 chr9 88134247 88134535 -29728092 - L1MB8 LINE L1 -66 6112 5828 389 299 86 17 chr9 88134967 88135141 -29727486 - MIR SINE MIR -6 256 71 29 47 0 0 chr9 88135283 88135326 -29727301 + AT_rich Low_complexity Low_complexity 1 43 0 1895 158 0 16 chr9 88136186 88136490 -29726137 + AluJo SINE Alu 1 299 -13 209 286 0 20 chr9 88136791 88136840 -29725787 - MIR SINE MIR -132 76 29 534 292 65 0 chr9 88137281 88137449 -29725178 + MER58A DNA MER1_type 44 222 -2 296 331 165 18 chr9 88137638 88138031 -29724596 + L2 LINE L2 2084 2534 -780 993 153 0 0 chr9 88138797 88138947 -29723680 - AluJo SINE Alu -162 150 1 22 0 0 30 chr9 88140628 88140639 -29721988 + AT_rich Low_complexity Low_complexity 1 11 -21 4414 90 19 3 chr9 88140639 88141281 -29721346 + L1MA1 LINE L1 5651 6302 0 22 0 0 30 chr9 88141281 88141302 -29721325 + AT_rich Low_complexity Low_complexity 11 32 0 224 291 39 58 chr9 88141459 88141562 -29721065 - L2 LINE L2 -330 2983 2883 221 292 71 18 chr9 88141664 88141777 -29720850 - L2 LINE L2 -456 2858 2740 815 262 87 0 chr9 88141965 88142194 -29720433 + MIR SINE MIR 13 261 -1 183 42 0 0 chr9 88143226 88143250 -29719377 + (CAAAAA)n Simple_repeat Simple_repeat 4 27 0 346 367 40 7 chr9 88143390 88143540 -29719087 - MER5B DNA MER1_type -22 156 2 2081 58 0 4 chr9 88143551 88143808 -29718819 + AluY SINE Alu 46 301 -10 2408 74 0 0 chr9 88145442 88145739 -29716888 - AluSq SINE Alu -16 297 1 190 254 68 0 chr9 88146270 88146329 -29716298 - L3 LINE CR1 -290 1287 1225 413 176 55 11 chr9 88148309 88148400 -29714227 + MER81 DNA DNA 1 95 -19 21 36 0 0 chr9 88148802 88148830 -29713797 + AT_rich Low_complexity Low_complexity 1 28 0 2101 118 3 20 chr9 88149979 88150283 -29712344 + AluSg SINE Alu 1 299 -11 1916 149 3 32 chr9 88150807 88151115 -29711512 + AluJo SINE Alu 4 302 -10 237 239 14 56 chr9 88152089 88152160 -29710467 + L2 LINE L2 3246 3313 0 235 250 18 18 chr9 88153049 88153161 -29709466 - L1ME4a LINE L1 -3 6118 6007 1021 241 30 21 chr9 88153164 88153400 -29709227 - MER8 DNA MER2_type 0 239 2 200 372 64 32 chr9 88158033 88158189 -29704438 + L2 LINE L2 3036 3196 -76 * 543 257 148 17 chr9 88158180 88158274 -29704353 + L2 LINE L2 2186 2266 -1048 1215 202 19 79 chr9 88158274 88158555 -29704072 + MER2 DNA MER2_type 1 257 -87 1975 145 3 44 chr9 88158555 88158873 -29703754 - AluJb SINE Alu -5 307 3 1215 202 19 79 chr9 88158873 88158957 -29703670 + MER2 DNA MER2_type 257 344 0 543 257 148 17 chr9 88158957 88159099 -29703528 + L2 LINE L2 2266 2453 -861 2461 74 0 0 chr9 88159119 88159416 -29703211 + AluSc SINE Alu 1 297 -12 920 281 126 21 chr9 88159437 88159867 -29702760 + L2 LINE L2 2834 3308 -5 2497 75 0 0 chr9 88160208 88160513 -29702114 - AluY SINE Alu -6 305 1 21 36 0 0 chr9 88161548 88161576 -29701051 + AT_rich Low_complexity Low_complexity 1 28 0 185 296 0 122 chr9 88161685 88161783 -29700844 + MIR SINE MIR 20 105 -103 231 178 0 123 chr9 88161942 88162015 -29700612 + MIR SINE MIR 23 86 -122 2237 118 0 16 chr9 88162526 88162662 -29699965 + AluSx SINE Alu 1 138 -174 2375 109 0 0 chr9 88162662 88162974 -29699653 + AluSx SINE Alu 1 312 0 2237 118 0 16 chr9 88162974 88163143 -29699484 + AluSx SINE Alu 138 301 -11 2158 69 0 21 chr9 88164105 88164414 -29698213 - AluY SINE Alu 0 304 2 406 314 239 43 chr9 88164490 88165096 -29697531 + L3 LINE CR1 67 791 -786 189 121 0 0 chr9 88166924 88166957 -29695670 + (GA)n Simple_repeat Simple_repeat 2 34 0 214 231 33 22 chr9 88167088 88167179 -29695448 + T-rich Low_complexity Low_complexity 5 96 0 2108 96 6 71 chr9 88168064 88168386 -29694241 - AluSx SINE Alu -11 301 1 25 90 0 0 chr9 88168948 88169015 -29693612 + AT_rich Low_complexity Low_complexity 1 67 0 318 109 234 0 chr9 88169691 88169755 -29692872 + MER116 DNA Mariner 2 80 0 648 134 38 218 chr9 88169879 88170217 -29692410 + MER33 DNA MER1_type 1 260 -2325 1848 132 20 23 chr9 88170217 88170520 -29692107 - AluJb SINE Alu -10 302 1 648 134 38 218 chr9 88170520 88170576 -29692051 + MER33 DNA MER1_type 260 324 0 1186 147 0 0 chr9 88170937 88171100 -29691527 + AluSx SINE Alu 3 165 -147 311 78 39 0 chr9 88171132 88171183 -29691444 + Alu SINE Alu 250 302 0 1220 99 0 47 chr9 88172025 88172197 -29690430 - AluSg/x SINE Alu -17 295 132 1377 158 55 69 chr9 88172276 88172372 -29690255 + AluJo SINE Alu 1 97 -215 2470 74 0 19 chr9 88172372 88172682 -29689945 + AluY SINE Alu 1 304 -7 1377 158 55 69 chr9 88172682 88172876 -29689751 + AluJo SINE Alu 97 287 -25 23 0 0 0 chr9 88172876 88172899 -29689728 + AT_rich Low_complexity Low_complexity 1 23 0 273 348 57 6 chr9 88173504 88173662 -29688965 + L2 LINE L2 2447 2612 -702 520 279 149 6 chr9 88175390 88175571 -29687056 + MIR SINE MIR 59 262 0 587 242 126 42 chr9 88176078 88176268 -29686359 - MIR SINE MIR -56 206 1 236 320 88 0 chr9 88177136 88177261 -29685366 - MIR3 SINE MIR -15 193 58 21 89 0 0 chr9 88177632 88177688 -29684939 + AT_rich Low_complexity Low_complexity 1 56 0 2044 113 11 3 chr9 88178137 88178455 -29684172 - AluSx SINE Alu 0 320 1 234 208 0 0 chr9 88179179 88179232 -29683395 + (TAG)n Simple_repeat Simple_repeat 3 55 0 326 323 28 102 chr9 88179235 88179520 -29683107 - MIR3 SINE MIR 0 262 2 995 245 92 20 chr9 88179614 88179999 -29682628 + MLT1J2 LTR MaLR 1 413 -33 523 269 65 40 chr9 88180410 88180611 -29682016 - L2 LINE L2 -4 3309 3104 672 246 257 19 chr9 88180709 88181190 -29681437 - L2 LINE L2 0 3313 2704 216 319 44 97 chr9 88181228 88181341 -29681286 - MER91A DNA MER1_type 0 196 90 246 192 55 0 chr9 88182165 88182238 -29680389 + (TAAA)n Simple_repeat Simple_repeat 3 79 0 2239 105 0 0 chr9 88182284 88182578 -29680049 + AluSg SINE Alu 1 294 -16 1534 183 3 63 chr9 88182966 88183266 -29679361 - AluJo SINE Alu -30 282 1 24 53 0 0 chr9 88183852 88183890 -29678737 + AT_rich Low_complexity Low_complexity 1 38 0 315 271 54 114 chr9 88184036 88184202 -29678425 - MIR3 SINE MIR -11 197 42 2278 119 28 19 chr9 88184694 88185055 -29677572 + THE1B LTR MaLR 1 364 0 522 288 113 25 chr9 88185192 88185671 -29676956 + LTR33 LTR ERVL 1 521 0 323 237 61 79 chr9 88186674 88186788 -29675839 - L2 LINE L2 -8 3264 3153 305 270 56 0 chr9 88187288 88187377 -29675250 - MIR3 SINE MIR -34 174 81 301 273 27 27 chr9 88187426 88187536 -29675091 - MIR SINE MIR -36 226 117 212 179 0 0 chr9 88187644 88187683 -29674944 + T-rich Low_complexity Low_complexity 1 39 0 1503 182 61 7 chr9 88187847 88188127 -29674500 + AluJo SINE Alu 1 295 -17 2091 112 0 0 chr9 88188210 88188487 -29674140 + AluSx SINE Alu 35 311 -1 568 231 141 0 chr9 88188993 88189149 -29673478 - MER58A DNA MER1_type 0 224 47 1550 224 52 21 chr9 88189292 88189769 -29672858 - L1ME1 LINE L1 0 6166 5675 2043 145 0 7 chr9 88189824 88190128 -29672499 - AluJb SINE Alu -10 302 1 21 0 0 0 chr9 88190558 88190579 -29672048 + AT_rich Low_complexity Low_complexity 1 21 0 434 315 70 60 chr9 88190718 88191032 -29671595 + L2 LINE L2 2996 3312 -1 182 328 85 108 chr9 88191034 88191293 -29671334 + L2 LINE L2 3020 3272 0 201 342 54 77 chr9 88193262 88193575 -29669052 + L2 LINE L2 2621 2926 -388 25 0 0 0 chr9 88194003 88194028 -29668599 + AT_rich Low_complexity Low_complexity 1 25 0 233 255 160 11 chr9 88194504 88194598 -29668029 + MIR3 SINE MIR 90 197 -11 211 329 27 14 chr9 88194678 88194751 -29667876 + MIR SINE MIR 9 82 -180 210 91 0 0 chr9 88194760 88194793 -29667834 + (A)n Simple_repeat Simple_repeat 1 33 0 21 0 0 0 chr9 88194831 88194852 -29667775 + AT_rich Low_complexity Low_complexity 1 21 0 2264 115 0 0 chr9 88194938 88195243 -29667384 + AluSq SINE Alu 1 305 -8 424 295 51 9 chr9 88195259 88195410 -29667217 + MIR3 SINE MIR 34 191 -17 755 220 126 23 chr9 88195461 88195675 -29666952 + MIR SINE MIR 27 262 0 21 0 0 0 chr9 88195679 88195700 -29666927 + AT_rich Low_complexity Low_complexity 1 21 0 2265 117 0 7 chr9 88196091 88196400 -29666227 + AluSx SINE Alu 1 307 -5 21 0 0 0 chr9 88196625 88196646 -29665981 + AT_rich Low_complexity Low_complexity 1 21 0 942 211 24 5 chr9 88198467 88198675 -29663952 - MER58B DNA MER1_type 0 341 130 10967 22 1 0 chr9 88199322 88201373 -29661254 - L1PA3 LINE L1 0 6155 4104 1486 211 94 17 chr9 88201374 88201385 -29661242 + L2 LINE L2 2549 2558 -756 2139 126 7 0 chr9 88201385 88201679 -29660948 - AluSx SINE Alu -16 296 1 1486 211 94 17 chr9 88201679 88202028 -29660599 + L2 LINE L2 2558 2937 -377 520 296 6 31 chr9 88201997 88202159 -29660468 + L2 LINE L2 3146 3303 -10 * 218 302 0 0 chr9 88202632 88202685 -29659942 + GA-rich Low_complexity Low_complexity 2 54 0 2292 84 0 3 chr9 88203063 88203374 -29659253 + AluSx SINE Alu 1 310 0 633 216 164 14 chr9 88203390 88203603 -29659024 + MIR SINE MIR 12 256 -6 331 254 119 109 chr9 88206415 88206809 -29655818 + L1MEd LINE L1 121 518 -5601 2186 101 3 7 chr9 88207246 88207542 -29655085 + AluSx SINE Alu 4 298 -14 1638 199 95 46 chr9 88207947 88208464 -29654163 + MLT1F LTR MaLR 1 542 0 530 272 174 0 chr9 88209055 88209250 -29653377 - MIR SINE MIR 0 262 34 1763 138 17 27 chr9 88209261 88209557 -29653070 - AluJo SINE Alu -19 293 1 225 291 29 155 chr9 88210610 88210751 -29651876 + L2 LINE L2 2612 2703 -611 234 62 0 0 chr9 88210751 88210783 -29651844 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 225 291 29 155 chr9 88210783 88210919 -29651708 + L2 LINE L2 2703 2854 -460 1338 291 37 12 chr9 88210919 88211349 -29651278 + L2 LINE L2 2365 2805 -509 875 288 53 33 chr9 88211325 88211418 -29651209 + L2 LINE L2 2970 3060 -253 * 1189 178 14 14 chr9 88211418 88211637 -29650990 + MER20 DNA MER1_type 1 219 0 875 288 53 33 chr9 88211637 88211880 -29650747 + L2 LINE L2 3060 3313 0 220 333 140 0 chr9 88213427 88213520 -29649107 + MIR SINE MIR 37 142 -66 264 252 180 18 chr9 88213525 88213636 -29648991 - L2 LINE L2 -9 3304 3176 * 573 312 63 91 chr9 88213635 88214176 -29648451 - L2 LINE L2 0 3313 2783 2306 95 0 35 chr9 88214176 88214492 -29648135 + AluSg SINE Alu 1 305 -5 573 312 63 91 chr9 88214492 88214549 -29648078 - L2 LINE L2 -530 2783 2726 225 207 35 52 chr9 88214557 88214615 -29648012 - L2 LINE L2 -544 2770 2714 197 238 0 24 chr9 88214627 88214669 -29647958 - L2 LINE L2 -560 2754 2714 2279 213 57 24 chr9 88214670 88215219 -29647408 + MLT1F1 LTR MaLR 1 567 0 309 242 63 0 chr9 88215219 88215314 -29647313 + MLT1F1-int LTR MaLR 1 101 -1270 1793 163 99 0 chr9 88215374 88215706 -29646921 - MLT1A1 LTR MaLR 0 365 1 737 261 65 8 chr9 88215728 88215988 -29646639 + MLT1F1-int LTR MaLR 306 580 -791 2133 112 0 33 chr9 88215997 88216300 -29646327 + AluSp SINE Alu 2 294 -19 346 305 36 36 chr9 88216504 88216671 -29645956 + MLT1F1-int LTR MaLR 692 858 -513 1063 269 26 0 chr9 88217187 88217455 -29645172 + MLT1F1 LTR MaLR 4 278 -289 509 293 65 0 chr9 88217457 88217580 -29645047 - MIR SINE MIR -131 131 1 339 321 16 54 chr9 88217583 88217767 -29644860 - MIR SINE MIR -84 178 2 2191 111 0 0 chr9 88217801 88218112 -29644515 + AluSg SINE Alu 1 311 0 277 306 56 28 chr9 88218226 88218334 -29644293 - MIR SINE MIR -124 138 28 1880 139 29 64 chr9 88218643 88219018 -29643609 + MLT1A1 LTR MaLR 1 362 -3 402 176 176 51 chr9 88219339 88219515 -29643112 - L1ME4a LINE L1 -16 6105 5908 652 243 32 48 chr9 88219537 88219726 -29642901 - MIR SINE MIR 0 262 77 586 219 116 14 chr9 88220086 88220232 -29642395 + MIR SINE MIR 3 163 -99 2084 102 3 53 chr9 88220232 88220555 -29642072 + AluSx SINE Alu 1 307 -5 1426 258 88 33 chr9 88221246 88221444 -29641183 - L1ME3A LINE L1 -285 5884 5699 2200 100 40 3 chr9 88221444 88221743 -29640884 - AluSx SINE Alu -2 310 1 1426 258 88 33 chr9 88221743 88222170 -29640457 - L1ME3A LINE L1 -470 5699 5297 2093 128 3 28 chr9 88222170 88222489 -29640138 - AluJb SINE Alu -1 311 1 1426 258 88 33 chr9 88222489 88223136 -29639491 - L1ME3A LINE L1 -872 5297 4492 742 191 20 13 chr9 88223310 88223462 -29639165 - FRAM SINE Alu -2 174 22 890 289 68 14 chr9 88223500 88223929 -29638698 - L1ME3A LINE L1 -1793 4353 3902 266 283 0 0 chr9 88224322 88224375 -29638252 + L3 LINE CR1 463 515 -1062 837 248 62 21 chr9 88224938 88225180 -29637447 + MIR SINE MIR 6 257 -5 214 205 41 107 chr9 88225424 88225546 -29637081 + L3 LINE CR1 1189 1302 -275 378 282 153 16 chr9 88225558 88225682 -29636945 + L3 LINE CR1 1435 1575 -2 196 261 0 0 chr9 88227578 88227624 -29635003 + L2 LINE L2 3222 3267 -5 350 288 43 49 chr9 88228915 88229078 -29633549 + MIR SINE MIR 15 176 -86 360 238 143 0 chr9 88229473 88229578 -29633049 - MER103 DNA DNA -44 122 3 333 328 57 40 chr9 88229700 88229877 -29632750 + MIR3 SINE MIR 23 202 -6 189 0 0 0 chr9 88229954 88229975 -29632652 + (T)n Simple_repeat Simple_repeat 1 21 0 284 240 67 13 chr9 88231648 88231723 -29630904 + L2 LINE L2 3194 3272 0 1738 152 7 52 chr9 88232035 88232345 -29630282 - AluJb SINE Alu -16 296 1 235 285 169 29 chr9 88232557 88232682 -29629945 + MIR SINE MIR 16 157 -67 283 180 66 16 chr9 88232799 88232860 -29629767 - L2 LINE L2 -4 3268 3205 22 35 0 0 chr9 88233412 88233441 -29629186 + AT_rich Low_complexity Low_complexity 1 29 0 656 289 78 0 chr9 88233950 88234168 -29628459 + MLT1J LTR MaLR 45 279 -232 1073 160 0 17 chr9 88234788 88234991 -29627636 - AluJb SINE Alu 0 312 121 576 194 0 0 chr9 88234991 88235094 -29627533 + AluJb SINE Alu 176 278 -34 180 111 0 0 chr9 88235125 88235152 -29627475 + (GGGA)n Simple_repeat Simple_repeat 4 30 0 369 0 0 0 chr9 88235763 88235804 -29626823 + (TCTA)n Simple_repeat Simple_repeat 2 42 0 300 127 0 36 chr9 88235836 88235891 -29626736 - MER20 DNA MER1_type -70 149 97 2506 56 0 7 chr9 88236848 88237152 -29625475 + AluY SINE Alu 1 302 -9 495 334 110 36 chr9 88237685 88238370 -29624257 - L2 LINE L2 -8 3264 2526 776 139 9 0 chr9 88238551 88238666 -29623961 - AluJb SINE Alu -195 117 2 501 319 30 56 chr9 88239636 88239868 -29622759 - L2 LINE L2 -191 3081 2856 1705 250 45 42 chr9 88239882 88239958 -29622669 + HAL1 LINE L1 116 190 -2317 2219 183 36 10 chr9 88239958 88240373 -29622254 + MSTB LTR MaLR 1 426 0 1705 250 45 42 chr9 88240373 88240936 -29621691 + HAL1 LINE L1 190 757 -1750 1304 100 19 71 chr9 88240976 88241186 -29621441 - AluSg/x SINE Alu -20 290 92 918 153 117 54 chr9 88241360 88241478 -29621149 - MER46A DNA MER2_type -2495 236 127 2292 99 0 13 chr9 88241478 88241781 -29620846 + AluSq SINE Alu 1 299 -14 918 153 117 54 chr9 88241781 88241884 -29620743 - MER46A DNA MER2_type -2604 127 1 1423 218 144 9 chr9 88241884 88242320 -29620307 + MLT1E1 LTR MaLR 138 632 -22 230 179 36 0 chr9 88242340 88242396 -29620231 + L1ME1 LINE L1 6109 6166 0 * 479 247 98 25 chr9 88242391 88242666 -29619961 + HAL1 LINE L1 1067 1361 -1146 963 261 117 18 chr9 88242669 88243629 -29618998 + HAL1 LINE L1 1412 2496 -11 337 232 58 58 chr9 88244456 88244594 -29618033 + L1ME3 LINE L1 5569 5706 -464 1096 264 19 50 chr9 88244612 88245090 -29617537 + L1ME3 LINE L1 5692 6154 -8 314 272 94 84 chr9 88245257 88245673 -29616954 - L1MC4 LINE L1 0 8042 7623 2354 98 0 19 chr9 88245676 88245992 -29616635 - AluSx SINE Alu -2 310 1 2052 116 34 0 chr9 88246110 88246402 -29616225 - AluSx SINE Alu -10 302 1 1777 160 4 0 chr9 88247780 88248049 -29614578 - AluJb SINE Alu -42 270 1 21 0 0 0 chr9 88248056 88248077 -29614550 + AT_rich Low_complexity Low_complexity 1 21 0 2429 95 0 0 chr9 88248178 88248484 -29614143 + AluSx SINE Alu 1 306 -6 743 200 28 61 chr9 88249084 88249264 -29613363 + FRAM SINE Alu 1 166 -10 186 349 12 47 chr9 88250182 88250268 -29612359 + MIR SINE MIR 34 116 -92 239 234 16 47 chr9 88250599 88250663 -29611964 - L2 LINE L2 -3 3269 3208 354 209 15 119 chr9 88250666 88250697 -29611930 - L2 LINE L2 0 3313 3280 2385 110 90 22 chr9 88250697 88251098 -29611529 + MSTA LTR MaLR 1 428 0 354 209 15 119 chr9 88251098 88251200 -29611427 - L2 LINE L2 -33 3280 3194 247 341 30 23 chr9 88252998 88253130 -29609497 - L2 LINE L2 -1201 2113 1981 2617 187 26 14 chr9 88253642 88253910 -29608717 - L1ME1 LINE L1 -5 6161 5898 432 219 10 0 chr9 88253910 88254006 -29608621 - L1MB3 LINE L1 -7 6176 6080 2617 187 26 14 chr9 88254006 88254304 -29608323 - L1ME1 LINE L1 -268 5898 5588 252 270 40 14 chr9 88254474 88254548 -29608079 + MIR SINE MIR 185 260 -2 968 106 96 30 chr9 88254550 88254748 -29607879 + L1MA8 LINE L1 5771 5981 -310 958 130 7 0 chr9 88254757 88254903 -29607724 - FRAM SINE Alu -2 174 28 1159 120 103 16 chr9 88254905 88255147 -29607480 + L1MA8 LINE L1 6014 6276 -15 776 199 25 6 chr9 88255152 88255313 -29607314 + AluJb SINE Alu 1 164 -148 709 190 138 126 chr9 88255526 88255692 -29606935 - MLT1D LTR MaLR 0 505 343 634 152 0 0 chr9 88255692 88255791 -29606836 - HY3 scRNA scRNA -2 99 1 709 190 138 126 chr9 88255791 88255950 -29606677 - MLT1D LTR MaLR -162 343 176 482 202 62 0 chr9 88255959 88256088 -29606539 - L1MB7 LINE L1 -16 6168 6032 1147 121 0 0 chr9 88256143 88256300 -29606327 - AluJb SINE Alu -6 306 150 259 349 146 51 chr9 88256503 88256913 -29605714 - L3 LINE CR1 -1072 505 57 1435 116 32 49 chr9 88257963 88258066 -29604561 - L1MA5A LINE L1 -29 6268 6165 2157 118 7 0 chr9 88258066 88258363 -29604264 - AluSx SINE Alu -13 299 1 1435 116 32 49 chr9 88258363 88258543 -29604084 - L1MA5A LINE L1 -132 6165 5990 1800 168 7 7 chr9 88262520 88262817 -29599810 - AluJo SINE Alu -15 297 1 1901 138 0 0 chr9 88262848 88263101 -29599526 + AluSx SINE Alu 1 253 -59 1612 182 21 14 chr9 88263116 88263396 -29599231 - AluJo SINE Alu -30 282 1 2038 124 3 7 chr9 88264316 88264599 -29598028 + AluSq SINE Alu 5 286 -27 405 0 0 0 chr9 88264599 88264644 -29597983 + (CA)n Simple_repeat Simple_repeat 2 46 0 1549 201 59 3 chr9 88264686 88265009 -29597618 - MER7A DNA MER2_type -1 345 7 341 355 59 5 chr9 88265141 88265327 -29597300 - L3 LINE CR1 -861 716 521 339 261 0 75 chr9 88265555 88265689 -29596938 - MIR SINE MIR -80 182 59 29 0 0 0 chr9 88266102 88266131 -29596496 + AT_rich Low_complexity Low_complexity 1 29 0 1916 159 0 3 chr9 88266447 88266730 -29595897 + AluSx SINE Alu 1 282 -30 1543 167 0 48 chr9 88267352 88267622 -29595005 + AluJo SINE Alu 1 257 -55 331 343 138 43 chr9 88268014 88268224 -29594403 + MIR SINE MIR 1 230 -32 189 0 0 0 chr9 88268492 88268513 -29594114 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 277 154 163 57 chr9 88268696 88268819 -29593808 + HAL1 LINE L1 803 938 -1569 343 268 53 48 chr9 88268855 88268929 -29593698 + HAL1 LINE L1 1032 1104 -1403 2467 84 3 0 chr9 88268929 88269237 -29593390 - AluSp SINE Alu -4 309 1 343 268 53 48 chr9 88269237 88269371 -29593256 + HAL1 LINE L1 1104 1241 -1266 * 611 238 78 37 chr9 88269367 88269611 -29593016 + HAL1 LINE L1 2254 2507 0 1976 119 3 70 chr9 88269615 88269927 -29592700 + AluSx SINE Alu 1 291 -21 2328 101 0 0 chr9 88270774 88271070 -29591557 + AluSg SINE Alu 1 296 -14 186 43 0 0 chr9 88271295 88271318 -29591309 + (T)n Simple_repeat Simple_repeat 1 23 0 2356 81 0 13 chr9 88271379 88271677 -29590950 - AluY SINE Alu -17 294 1 815 228 7 0 chr9 88271823 88271972 -29590655 + AluJo SINE Alu 1 150 -162 1633 151 31 34 chr9 88271985 88272277 -29590350 - AluJo SINE Alu -19 293 3 404 232 11 11 chr9 88272285 88272380 -29590247 - MER2 DNA MER2_type -250 95 1 1356 161 0 22 chr9 88272858 88273088 -29589539 + AluJb SINE Alu 88 312 0 1067 209 40 37 chr9 88273155 88273476 -29589151 + MER33 DNA MER1_type 2 323 -1 1604 185 4 4 chr9 88274441 88274706 -29587921 + AluJb SINE Alu 35 299 -13 2244 106 0 7 chr9 88274946 88275238 -29587389 - AluSx SINE Alu -18 294 5 320 345 15 73 chr9 88275247 88275377 -29587250 - L1ME LINE L1 -386 5735 5626 1887 143 31 3 chr9 88275377 88275670 -29586957 - AluJb SINE Alu -11 301 1 320 345 15 73 chr9 88275670 88275800 -29586827 - L1ME LINE L1 -495 5626 5490 1870 163 3 3 chr9 88276061 88276362 -29586265 + AluJb SINE Alu 1 301 -11 2124 114 7 10 chr9 88276495 88276794 -29585833 - AluSg SINE Alu -12 298 1 324 323 71 8 chr9 88277307 88277434 -29585193 + MIR SINE MIR 19 153 -109 2059 122 13 26 chr9 88278148 88278459 -29584168 - AluSq SINE Alu -6 307 1 906 210 17 0 chr9 88278614 88278795 -29583832 + MER5A DNA MER1_type 5 188 -1 1969 143 10 3 chr9 88279545 88279852 -29582775 + AluSx SINE Alu 1 309 -3 21 89 0 0 chr9 88280050 88280106 -29582521 + AT_rich Low_complexity Low_complexity 1 56 0 2302 100 0 3 chr9 88280147 88280448 -29582179 + AluSx SINE Alu 1 300 -12 2357 77 0 10 chr9 88281459 88281759 -29580868 + AluY SINE Alu 1 297 -14 1584 137 34 19 chr9 88281768 88282031 -29580596 + AluSx SINE Alu 38 304 -8 1107 201 27 126 chr9 88282040 88282517 -29580110 + L1MD1 LINE L1 5794 6223 -19 1082 314 153 34 chr9 88282977 88284053 -29578574 + L2 LINE L2 1540 2743 -571 851 219 30 50 chr9 88284053 88284251 -29578376 - L1ME1 LINE L1 -104 6062 5871 2137 118 3 10 chr9 88284251 88284555 -29578072 - AluSx SINE Alu -10 302 1 851 219 30 50 chr9 88284555 88284657 -29577970 - L1ME1 LINE L1 -295 5871 5768 1989 150 17 0 chr9 88284697 88284990 -29577637 + AluJb SINE Alu 1 298 -14 918 224 13 35 chr9 88285264 88285442 -29577185 - MER58A DNA MER1_type -2196 224 51 3838 89 9 32 chr9 88285442 88286003 -29576624 + LTR14 LTR ERVK 1 548 0 918 224 13 35 chr9 88286003 88286052 -29576575 - MER58A DNA MER1_type -2369 51 2 776 209 0 0 chr9 88286096 88286225 -29576402 + FLAM_A SINE Alu 2 130 -3 420 220 106 43 chr9 88286324 88286465 -29576162 + MIR SINE MIR 63 212 -50 1967 147 3 13 chr9 88287215 88287521 -29575106 - AluSx SINE Alu 0 312 10 375 313 204 17 chr9 88288300 88288540 -29574087 - L2 LINE L2 -497 2817 2533 3314 257 70 59 chr9 88288541 88289484 -29573143 - L1MDb LINE L1 -2290 4116 3185 3438 33 9 5 chr9 88289484 88289910 -29572717 + L1PA4 LINE L1 5724 6151 -4 3314 257 70 59 chr9 88289910 88290067 -29572560 - L1MDb LINE L1 -3221 3185 3031 1644 189 0 14 chr9 88290067 88290364 -29572263 - AluJb SINE Alu -19 293 1 3314 257 70 59 chr9 88290364 88290524 -29572103 - L1MDb LINE L1 -3375 3031 2874 1861 174 0 7 chr9 88290524 88290823 -29571804 - AluJb SINE Alu -15 297 1 3314 257 70 59 chr9 88290823 88292303 -29570324 - L1MDb LINE L1 -3532 2874 1340 276 271 0 0 chr9 88292316 88292401 -29570226 + L1 LINE L1 5099 5183 -963 807 278 66 9 chr9 88292645 88292872 -29569755 - L2 LINE L2 -774 2540 2301 269 306 0 20 chr9 88292868 88292966 -29569661 + L3 LINE CR1 1480 1575 -2 * 288 330 48 10 chr9 88295834 88295937 -29566690 + L2 LINE L2 3201 3307 -6 1800 154 0 77 chr9 88297144 88297482 -29565145 + AluJb SINE Alu 1 312 0 551 154 36 18 chr9 88297964 88298074 -29564553 + FRAM SINE Alu 59 170 -6 907 194 13 13 chr9 88298487 88298642 -29563985 - FRAM SINE Alu -23 153 1 21 89 0 0 chr9 88298862 88298918 -29563709 + AT_rich Low_complexity Low_complexity 1 56 0 189 284 134 24 chr9 88299674 88299801 -29562826 + L2 LINE L2 2924 3064 -208 688 258 19 0 chr9 88299872 88300027 -29562600 - MIR SINE MIR -8 254 97 190 373 0 0 chr9 88300160 88300219 -29562408 + L2 LINE L2 3246 3304 -9 376 298 21 11 chr9 88300223 88300317 -29562310 + MIR3 SINE MIR 70 164 -44 2181 62 52 3 chr9 88301918 88302207 -29560420 + AluY SINE Alu 1 303 -8 1386 141 168 12 chr9 88302362 88302618 -29560009 + AluJb SINE Alu 1 296 -16 2157 107 3 3 chr9 88303349 88303648 -29558979 + AluSx SINE Alu 1 299 -13 2260 72 28 10 chr9 88303811 88304102 -29558525 + AluY SINE Alu 1 296 -15 459 275 22 36 chr9 88305487 88305625 -29557002 + L2 LINE L2 3176 3311 -2 208 193 18 18 chr9 88306536 88306593 -29556034 + A-rich Low_complexity Low_complexity 5 61 0 235 233 248 16 chr9 88308648 88308777 -29553850 - L2 LINE L2 -50 3263 3105 439 279 47 65 chr9 88308794 88309019 -29553608 - L2 LINE L2 -323 2949 2724 281 130 143 39 chr9 88309038 88309115 -29553512 - L1MD1 LINE L1 -15 6227 6143 419 178 0 44 chr9 88309120 88309210 -29553417 - L1MD2 LINE L1 -279 6080 5995 1856 97 0 0 chr9 88309564 88309802 -29552825 + AluSx SINE Alu 1 238 -74 447 157 14 0 chr9 88309824 88309894 -29552733 + AluSx SINE Alu 222 292 -19 239 322 38 66 chr9 88310603 88310786 -29551841 - L2 LINE L2 -337 2977 2800 789 310 39 20 chr9 88310805 88311006 -29551621 + MIR SINE MIR 2 211 -51 2126 120 7 7 chr9 88311006 88311306 -29551321 + AluSx SINE Alu 1 300 -12 789 310 39 20 chr9 88311306 88311359 -29551268 + MIR SINE MIR 211 261 -1 246 243 78 6 chr9 88312942 88313055 -29549572 + MIR SINE MIR 109 233 -29 1158 196 125 39 chr9 88313122 88313458 -29549169 + MLT1A1 LTR MaLR 1 365 0 1579 158 3 101 chr9 88313706 88314023 -29548604 - AluJo SINE Alu -26 286 1 336 265 71 95 chr9 88314028 88314239 -29548388 + MIR SINE MIR 47 252 -10 701 156 15 22 chr9 88314378 88314513 -29548114 + FRAM SINE Alu 42 175 -1 198 0 0 0 chr9 88315620 88315642 -29546985 + (TAAAA)n Simple_repeat Simple_repeat 5 26 0 26 50 0 0 chr9 88315697 88315737 -29546890 + AT_rich Low_complexity Low_complexity 1 40 0 22 56 0 0 chr9 88315769 88315805 -29546822 + AT_rich Low_complexity Low_complexity 1 36 0 283 286 17 0 chr9 88315861 88315980 -29546647 + L1ME4a LINE L1 5797 5917 -204 263 247 35 0 chr9 88316041 88316126 -29546501 + L1ME4a LINE L1 6009 6096 -25 4276 176 50 29 chr9 88316446 88316789 -29545838 + L1MB5 LINE L1 4107 4441 -1733 4057 85 19 21 chr9 88316789 88317177 -29545450 + L1MA2 LINE L1 5685 6073 -231 2150 109 3 7 chr9 88317177 88317479 -29545148 + AluSx SINE Alu 5 305 -7 4057 85 19 21 chr9 88317479 88317711 -29544916 + L1MA2 LINE L1 6073 6304 0 4276 176 50 29 chr9 88317711 88319133 -29543494 + L1MB5 LINE L1 4441 6096 -78 2341 68 3 10 chr9 88319148 88319441 -29543186 - AluSg SINE Alu -19 291 1 863 178 7 0 chr9 88319466 88319612 -29543015 + FRAM SINE Alu 18 164 -12 44 0 0 0 chr9 88319612 88319656 -29542971 + AT_rich Low_complexity Low_complexity 1 44 0 2206 112 0 35 chr9 88320476 88320788 -29541839 + AluSx SINE Alu 1 301 -11 427 324 55 57 chr9 88321214 88321581 -29541046 - L3 LINE CR1 -156 1421 1056 186 43 0 0 chr9 88321791 88321814 -29540813 + (A)n Simple_repeat Simple_repeat 1 23 0 242 93 0 23 chr9 88322306 88322349 -29540278 + (GAAAA)n Simple_repeat Simple_repeat 5 46 0 423 262 100 25 chr9 88322960 88323239 -29539388 + L1ME4a LINE L1 5598 5897 -224 243 258 150 0 chr9 88323281 88323401 -29539226 + L1ME4a LINE L1 5978 6115 -6 215 254 45 15 chr9 88323509 88323576 -29539051 + L3 LINE CR1 37 105 -1472 964 219 69 9 chr9 88323596 88323829 -29538798 - MIR SINE MIR 0 262 16 636 290 225 46 chr9 88323972 88324651 -29537976 + L3 LINE CR1 612 1412 -165 2331 103 3 0 chr9 88325630 88325930 -29536697 + AluSq SINE Alu 1 301 -12 281 275 34 0 chr9 88325937 88326052 -29536575 + L1ME4a LINE L1 5829 5933 -188 2241 96 0 0 chr9 88326166 88326447 -29536180 + AluSg SINE Alu 1 281 -29 1931 91 57 4 chr9 88327182 88327467 -29535160 + AluSq SINE Alu 5 303 0 496 286 25 37 chr9 88327801 88327962 -29534665 - MIR3 SINE MIR -33 175 17 2279 88 20 10 chr9 88328435 88328740 -29533887 + AluSq SINE Alu 1 308 -5 2405 91 3 0 chr9 88328893 88329200 -29533427 - AluSx SINE Alu -4 308 1 241 278 72 10 chr9 88329385 88329482 -29533145 + MIR SINE MIR 158 260 -2 709 130 28 0 chr9 88329780 88329888 -29532739 - FLAM_C SINE Alu -32 111 1 2044 134 17 3 chr9 88329900 88330198 -29532429 - AluSx SINE Alu -10 302 1 2327 91 0 26 chr9 88330479 88330788 -29531839 - AluSq SINE Alu -12 301 1 216 287 138 11 chr9 88331311 88331405 -29531222 + MIR SINE MIR 16 121 -87 236 275 14 43 chr9 88331865 88331934 -29530693 + L3b LINE CR1 1514 1580 -3 337 109 62 0 chr9 88332260 88332324 -29530303 + MIR3 SINE MIR 125 192 -16 25 51 0 0 chr9 88333197 88333236 -29529391 + GC_rich Low_complexity Low_complexity 1 39 0 899 253 27 0 chr9 88333751 88333976 -29528651 - MIR SINE MIR -26 236 6 2384 133 145 90 chr9 88334635 88335099 -29527528 - LTR36 LTR ERV1 0 611 107 2056 121 24 0 chr9 88335099 88335388 -29527239 - AluSq SINE Alu -17 296 1 2384 133 145 90 chr9 88335388 88335502 -29527125 - LTR36 LTR ERV1 -504 107 1 2398 103 0 3 chr9 88335997 88336307 -29526320 - AluSx SINE Alu -3 309 1 266 282 161 23 chr9 88336830 88337004 -29525623 + L2 LINE L2 3075 3272 0 397 252 30 30 chr9 88337337 88337468 -29525159 + MLT1K LTR MaLR 456 586 -2 505 264 51 28 chr9 88337839 88338017 -29524610 + MIR SINE MIR 34 215 -47 2223 94 0 0 chr9 88338017 88338293 -29524334 + AluSx SINE Alu 1 276 -36 233 284 102 11 chr9 88338502 88338590 -29524037 + L2 LINE L2 2967 3062 -210 22 0 0 0 chr9 88338748 88338770 -29523857 + AT_rich Low_complexity Low_complexity 1 22 0 520 287 79 15 chr9 88338800 88339018 -29523609 + MIR SINE MIR 4 235 -27 354 275 44 0 chr9 88339168 88339259 -29523368 - MER117 DNA MER1_type 0 197 103 1803 168 0 10 chr9 88339260 88339552 -29523075 - AluSx SINE Alu -3 309 21 2269 103 7 3 chr9 88340315 88340606 -29522021 + AluSx SINE Alu 1 292 -20 25 31 0 0 chr9 88340620 88340652 -29521975 + AT_rich Low_complexity Low_complexity 1 32 0 1038 115 0 0 chr9 88340671 88340810 -29521817 - AluJo SINE Alu -173 139 1 310 285 175 5 chr9 88340927 88341127 -29521500 + L2 LINE L2 2623 2856 -458 1802 219 81 40 chr9 88341162 88341499 -29521128 + MLT1D LTR MaLR 12 376 -129 2139 109 0 3 chr9 88341499 88341810 -29520817 - AluSx SINE Alu 0 310 1 1802 219 81 40 chr9 88341810 88341942 -29520685 + MLT1D LTR MaLR 376 501 -4 1639 189 19 32 chr9 88342072 88342442 -29520185 - MLT1A1 LTR MaLR 0 365 1 823 183 0 0 chr9 88342722 88342853 -29519774 + FRAM SINE Alu 2 132 -44 260 27 27 0 chr9 88342857 88342894 -29519733 + (TAAA)n Simple_repeat Simple_repeat 1 38 0 435 154 0 51 chr9 88344909 88344987 -29517640 - Tigger5 DNA MER2_type 0 2323 2250 399 241 0 0 chr9 88345026 88345105 -29517522 - Tigger5 DNA MER2_type -2244 79 1 253 0 54 0 chr9 88345324 88345361 -29517266 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 2303 67 0 7 chr9 88345363 88345645 -29516982 - AluY SINE Alu -31 280 1 27 49 0 0 chr9 88345859 88345900 -29516727 + AT_rich Low_complexity Low_complexity 1 41 0 1219 180 166 10 chr9 88346009 88346304 -29516323 + MER58B DNA MER1_type 1 341 0 402 276 10 0 chr9 88346895 88346993 -29515634 + MIR3 SINE MIR 98 196 -12 589 160 0 0 chr9 88347004 88347110 -29515517 + MIR SINE MIR 117 222 -40 220 310 223 52 chr9 88347574 88347942 -29514685 - L2 LINE L2 -4 3268 2838 2258 115 0 3 chr9 88348817 88349121 -29513506 - AluSx SINE Alu -9 303 1 344 202 30 40 chr9 88349334 88349433 -29513194 + MER21A LTR ERV1 700 797 -134 765 233 257 7 chr9 88349528 88350080 -29512547 + LTR50 LTR ERVL 1 523 0 1421 132 151 81 chr9 88350999 88351097 -29511530 + L1MB8 LINE L1 5797 5887 -291 2130 121 35 0 chr9 88351097 88351386 -29511241 + AluSx SINE Alu 1 299 -13 1421 132 151 81 chr9 88351386 88351644 -29510983 + L1MB8 LINE L1 5887 6178 0 622 255 115 33 chr9 88351831 88352060 -29510567 - L1 LINE L1 -2833 3313 3104 2347 72 0 10 chr9 88352060 88352352 -29510275 - AluSc SINE Alu -18 291 3 1417 178 68 7 chr9 88352355 88352636 -29509991 - AluJb SINE Alu -13 299 2 622 255 115 33 chr9 88352636 88352996 -29509631 - L1 LINE L1 -3043 3103 2663 1556 143 40 8 chr9 88353051 88353303 -29509324 - AluJo SINE Alu -12 300 41 780 301 75 15 chr9 88353648 88354037 -29508590 - L1M4 LINE L1 -2397 3749 3338 5038 149 43 5 chr9 88354054 88354914 -29507713 - L1MB7 LINE L1 -16 6168 5276 315 245 43 37 chr9 88354968 88355001 -29507626 - L1M4 LINE L1 -2875 3271 3240 1670 185 35 62 chr9 88355001 88355115 -29507512 + MLT2D LTR ERVL 4 119 -295 2093 113 38 0 chr9 88355115 88355407 -29507220 + AluSg SINE Alu 1 303 -7 1670 185 35 62 chr9 88355407 88355714 -29506913 + MLT2D LTR ERVL 119 414 0 315 245 43 37 chr9 88355714 88355868 -29506759 - L1M4 LINE L1 -2906 3240 3083 1438 137 176 4 chr9 88356138 88356393 -29506234 - AluJb SINE Alu -13 299 1 2183 86 31 0 chr9 88356518 88356810 -29505817 - AluSx SINE Alu -11 301 1 2182 137 0 0 chr9 88357760 88358060 -29504567 + AluSx SINE Alu 1 300 -12 607 305 16 5 chr9 88358178 88358365 -29504262 + MIR SINE MIR 65 253 -9 356 161 0 0 chr9 88359101 88359163 -29503464 - L2 LINE L2 -214 3058 2997 213 268 163 29 chr9 88359584 88359793 -29502834 + L2 LINE L2 1845 2081 -1233 2371 84 3 7 chr9 88360122 88360421 -29502206 - AluSg SINE Alu -12 298 1 935 242 132 38 chr9 88360920 88361313 -29501314 + MLT1J LTR MaLR 82 511 0 1376 295 59 11 chr9 88361314 88361775 -29500852 + MLT1J LTR MaLR 22 504 -7 440 215 215 0 chr9 88362829 88362973 -29499654 + MER5A DNA MER1_type 14 188 -1 22 0 0 0 chr9 88363562 88363584 -29499043 + AT_rich Low_complexity Low_complexity 1 22 0 267 54 0 0 chr9 88364176 88364213 -29498414 + (CAAAAA)n Simple_repeat Simple_repeat 1 37 0 2461 81 0 0 chr9 88364511 88364821 -29497806 + AluY SINE Alu 1 310 -1 2136 63 4 0 chr9 88365109 88365377 -29497250 - L1PA8 LINE L1 -4 6168 5900 3091 136 50 60 chr9 88365986 88366109 -29496518 + L1MB7 LINE L1 5581 5704 -480 2242 92 18 0 chr9 88366109 88366393 -29496234 - AluSp SINE Alu -24 289 1 3091 136 50 60 chr9 88366393 88366874 -29495753 + L1MB7 LINE L1 5704 6179 -5 26 0 0 0 chr9 88368100 88368126 -29494501 + AT_rich Low_complexity Low_complexity 1 26 0 537 315 17 0 chr9 88368342 88368580 -29494047 + L1ME LINE L1 5315 5556 -803 255 147 15 103 chr9 88368582 88368650 -29493977 + L3 LINE CR1 1496 1557 -20 627 284 29 5 chr9 88368652 88368860 -29493767 + L1ME LINE L1 5548 5760 -361 299 329 88 48 chr9 88370048 88370276 -29492351 + L2 LINE L2 3016 3252 -20 2324 102 3 3 chr9 88370279 88370583 -29492044 - AluSx SINE Alu -8 304 1 22 0 0 0 chr9 88370708 88370730 -29491897 + AT_rich Low_complexity Low_complexity 1 22 0 405 0 0 0 chr9 88370835 88370880 -29491747 + (CA)n Simple_repeat Simple_repeat 2 46 0 710 148 0 70 chr9 88370895 88371037 -29491590 - FLAM_A SINE Alu -1 132 1 422 279 107 38 chr9 88371075 88371361 -29491266 + L2 LINE L2 2757 3063 -250 378 42 0 0 chr9 88371405 88371453 -29491174 + (CA)n Simple_repeat Simple_repeat 2 49 0 1902 121 85 0 chr9 88371496 88371768 -29490859 - AluSx SINE Alu -17 295 1 263 198 161 25 chr9 88372184 88372265 -29490362 - MIR SINE MIR -12 250 159 500 207 5 106 chr9 88372270 88372458 -29490169 - MER104 DNA Tc2 -2 178 10 421 289 0 8 chr9 88372464 88372585 -29490042 - MIR SINE MIR -132 130 11 890 192 5 50 chr9 88372587 88372785 -29489842 + MER5A DNA MER1_type 1 189 0 2334 78 7 3 chr9 88372903 88373198 -29489429 + AluSx SINE Alu 1 296 -16 1673 183 17 7 chr9 88373278 88373579 -29489048 - AluJo SINE Alu -8 304 1 1168 118 41 0 chr9 88373746 88373916 -29488711 - AluSq SINE Alu -13 300 124 1026 104 0 0 chr9 88373980 88374105 -29488522 - AluSq SINE Alu -187 125 1 1130 174 25 42 chr9 88374144 88374385 -29488242 + Charlie1 DNA MER1_type 1433 1669 -1092 883 341 50 30 chr9 88374828 88375572 -29487055 + L2 LINE L2 2201 2959 -355 1690 129 59 22 chr9 88376393 88376664 -29485963 - AluJo SINE Alu -31 281 1 914 126 0 15 chr9 88376917 88377052 -29485575 + FLAM_C SINE Alu 1 133 0 2612 151 48 20 chr9 88377112 88377289 -29485338 + L1MB5 LINE L1 5648 5819 -355 2100 127 3 16 chr9 88377289 88377604 -29485023 + AluSx SINE Alu 1 311 -1 2612 151 48 20 chr9 88377604 88377931 -29484696 + L1MB5 LINE L1 5819 6166 -8 2285 107 3 0 chr9 88379581 88379880 -29482747 - AluSx SINE Alu -12 300 1 214 145 26 40 chr9 88380975 88381051 -29481576 + GA-rich Low_complexity Low_complexity 2 76 0 254 312 75 16 chr9 88381251 88381437 -29481190 + MER117 DNA MER1_type 1 197 0 2083 121 25 0 chr9 88381560 88381842 -29480785 - AluSx SINE Alu -18 294 6 1854 141 0 34 chr9 88381845 88382143 -29480484 - AluJo SINE Alu -24 288 1 2303 115 0 3 chr9 88384977 88385290 -29477337 - AluSq SINE Alu -1 312 1 216 0 0 0 chr9 88385290 88385314 -29477313 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 1039 155 0 0 chr9 88385314 88385462 -29477165 - AluSg/x SINE Alu -30 282 135 403 290 29 0 chr9 88386040 88386178 -29476449 + MIR3 SINE MIR 30 171 -37 184 196 18 89 chr9 88386657 88386713 -29475914 + L2 LINE L2 365 416 -2898 303 237 0 40 chr9 88386818 88386894 -29475733 + L3 LINE CR1 1417 1489 -88 184 255 0 0 chr9 88388784 88388831 -29473796 - MIR SINE MIR -113 149 103 2662 177 11 14 chr9 88389970 88390490 -29472137 - L1MB4 LINE L1 0 6180 5662 263 251 73 42 chr9 88390904 88391049 -29471578 - MIR SINE MIR -57 205 54 329 194 237 0 chr9 88391138 88391231 -29471396 + HAL1b LINE L1 867 981 -367 44 20 0 0 chr9 88391508 88391559 -29471068 + AT_rich Low_complexity Low_complexity 1 51 0 750 102 0 19 chr9 88391559 88391667 -29470960 - U6 snRNA snRNA -1 106 1 1777 185 7 0 chr9 88391794 88392096 -29470531 + AluJo SINE Alu 1 304 -8 2346 112 0 0 chr9 88392498 88392810 -29469817 + AluSx SINE Alu 1 312 0 1383 92 0 0 chr9 88393027 88393201 -29469426 + AluSg/x SINE Alu 133 306 -6 307 248 117 14 chr9 88393687 88393832 -29468795 - MIR SINE MIR -29 233 74 2260 91 0 57 chr9 88393982 88394300 -29468327 + AluSq SINE Alu 1 300 -13 927 242 128 71 chr9 88394609 88394744 -29467883 + MLT1F LTR MaLR 2 128 -414 2203 119 7 0 chr9 88394744 88395037 -29467590 + AluSx SINE Alu 1 295 -17 927 242 128 71 chr9 88395037 88395410 -29467217 + MLT1F LTR MaLR 128 539 -3 23 0 0 0 chr9 88395843 88395866 -29466761 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr9 88396125 88396146 -29466481 + AT_rich Low_complexity Low_complexity 1 21 0 2060 143 7 3 chr9 88396526 88396833 -29465794 + AluJb SINE Alu 1 308 -4 250 322 132 30 chr9 88397157 88397589 -29465038 - L2 LINE L2 -493 2821 2346 264 244 116 0 chr9 88397818 88397904 -29464723 - MER5A DNA MER1_type -87 102 7 797 220 6 0 chr9 88398069 88398228 -29464399 + L1PB4 LINE L1 5995 6154 -2 2064 133 7 0 chr9 88398231 88398517 -29464110 + AluSx SINE Alu 1 288 -24 192 325 58 58 chr9 88398544 88398750 -29463877 - L2 LINE L2 -389 2925 2720 1942 141 3 28 chr9 88399834 88400154 -29462473 - AluJb SINE Alu 0 312 1 424 234 36 0 chr9 88400420 88400531 -29462096 + MER103 DNA DNA 35 149 -17 537 335 51 0 chr9 88401088 88401285 -29461342 - MIR SINE MIR -35 227 21 26 50 0 0 chr9 88401499 88401539 -29461088 + AT_rich Low_complexity Low_complexity 1 40 0 1996 154 3 0 chr9 88401539 88401838 -29460789 - AluSx SINE Alu -10 302 3 508 269 17 46 chr9 88401907 88402073 -29460554 + MER117 DNA MER1_type 1 161 -36 1234 246 253 4 chr9 88402073 88402598 -29460029 + LTR50 LTR ERVL 1 656 -139 1870 149 27 7 chr9 88402650 88402945 -29459682 + AluJb SINE Alu 6 306 -6 182 36 0 36 chr9 88402947 88402975 -29459652 + (GGAGA)n Simple_repeat Simple_repeat 2 28 0 246 196 304 11 chr9 88402977 88403069 -29459558 + MER5A DNA MER1_type 71 189 0 228 67 0 0 chr9 88403161 88403191 -29459436 + LTR50 LTR ERVL 766 795 0 245 119 48 0 chr9 88403906 88403948 -29458679 + MER113 DNA MER1_type? 14 57 -464 21 0 0 0 chr9 88404069 88404090 -29458537 + AT_rich Low_complexity Low_complexity 1 21 0 257 304 38 0 chr9 88404207 88404286 -29458341 + L2 LINE L2 3223 3304 -9 1794 142 50 0 chr9 88404736 88405018 -29457609 + AluJb SINE Alu 1 296 -16 562 284 8 63 chr9 88405053 88405307 -29457320 - MIR SINE MIR -8 254 15 2055 121 3 13 chr9 88406274 88406572 -29456055 - AluSx SINE Alu -17 295 1 1058 171 68 0 chr9 88407305 88407510 -29455117 + MER20 DNA MER1_type 1 219 0 191 250 0 0 chr9 88407587 88407631 -29454996 + MIR SINE MIR 81 124 -84 210 265 191 0 chr9 88407652 88407720 -29454907 + MIR3 SINE MIR 81 161 -47 293 267 20 47 chr9 88407868 88408018 -29454609 - L2 LINE L2 -1 3312 3167 350 312 57 19 chr9 88408549 88408706 -29453921 + MIR SINE MIR 50 212 -50 23 78 0 0 chr9 88408877 88408928 -29453699 + AT_rich Low_complexity Low_complexity 1 51 0 322 296 107 38 chr9 88409066 88409568 -29453059 - L2 LINE L2 -187 3085 2537 306 248 72 48 chr9 88409676 88409801 -29452826 - MIR3 SINE MIR -3 205 78 2037 112 4 0 chr9 88409823 88410115 -29452512 - AluSx SINE Alu 0 309 17 559 182 0 0 chr9 88410116 88410204 -29452423 - AluSg/x SINE Alu -88 222 135 412 246 198 0 chr9 88410207 88410394 -29452233 - MER5C DNA MER1_type 0 324 101 777 182 8 0 chr9 88410396 88410528 -29452099 + FLAM_C SINE Alu 2 134 -9 330 68 0 0 chr9 88410775 88410819 -29451808 + Alu SINE Alu 1 44 -259 333 231 26 13 chr9 88410833 88410911 -29451716 - MLT1A1 LTR MaLR -215 150 72 2269 117 0 22 chr9 88410911 88411228 -29451399 + AluSx SINE Alu 1 310 -2 211 191 0 0 chr9 88411556 88411598 -29451029 + (TGG)n Simple_repeat Simple_repeat 3 44 0 23 54 0 0 chr9 88411929 88411966 -29450661 + AT_rich Low_complexity Low_complexity 1 37 0 1832 175 0 3 chr9 88412134 88412425 -29450202 - AluJo SINE Alu -22 290 1 2168 120 0 10 chr9 88412647 88412948 -29449679 + AluSq SINE Alu 1 298 -15 2200 100 0 7 chr9 88413233 88413522 -29449105 - AluSx SINE Alu -25 287 1 202 274 35 53 chr9 88413832 88413945 -29448682 + MIR SINE MIR 109 219 -43 740 178 8 8 chr9 88415285 88415414 -29447213 + AluJb SINE Alu 156 284 -28 2344 107 0 0 chr9 88415618 88415928 -29446699 + AluSg SINE Alu 1 310 0 445 325 19 0 chr9 88416163 88416320 -29446307 - MIR SINE MIR -71 191 32 187 301 60 12 chr9 88416370 88416453 -29446174 + L3 LINE CR1 65 151 -1426 335 343 57 9 chr9 88416563 88416773 -29445854 + L3 LINE CR1 258 477 -1100 220 213 98 0 chr9 88416808 88416869 -29445758 + MER5A DNA MER1_type 9 75 -114 1885 147 0 7 chr9 88416870 88417149 -29445478 + AluJb SINE Alu 2 278 -34 198 191 0 0 chr9 88417149 88417196 -29445431 + G-rich Low_complexity Low_complexity 3 49 0 771 106 106 24 chr9 88417413 88417536 -29445091 - FLAM_C SINE Alu 0 133 1 480 266 150 34 chr9 88417557 88417764 -29444863 + MIR SINE MIR 5 235 -27 1166 227 77 73 chr9 88418425 88418944 -29443683 + L1MC4 LINE L1 7357 7877 -165 204 125 0 0 chr9 88418987 88419019 -29443608 + (TAG)n Simple_repeat Simple_repeat 2 33 0 447 151 129 0 chr9 88419064 88419157 -29443470 + L1MB4 LINE L1 6046 6150 -30 406 145 0 0 chr9 88419158 88419220 -29443407 + Alu SINE Alu 238 299 -3 1785 177 23 0 chr9 88419231 88419530 -29443097 + AluJb SINE Alu 1 306 -6 257 91 45 0 chr9 88419547 88419591 -29443036 + L1MB4 LINE L1 6135 6180 0 356 122 0 0 chr9 88419616 88419665 -29442962 + FRAM/FAM SINE Alu 22 70 -105 2044 131 13 13 chr9 88419736 88420041 -29442586 + AluSx SINE Alu 1 305 -7 766 145 103 0 chr9 88420043 88420188 -29442439 + L1MC1 LINE L1 6173 6332 -1 2265 79 31 0 chr9 88420216 88420508 -29442119 - AluSq SINE Alu -12 301 1 2071 121 28 0 chr9 88421075 88421364 -29441263 - AluSx SINE Alu -15 297 1 2130 82 0 4 chr9 88421375 88421642 -29440985 - AluSq SINE Alu -5 308 43 263 315 46 0 chr9 88421643 88421751 -29440876 + L2 LINE L2 2515 2627 -687 2732 167 49 78 chr9 88422065 88422119 -29440508 + MER21B LTR ERV1 265 319 -544 1710 143 16 55 chr9 88422119 88422427 -29440200 + AluSx SINE Alu 1 296 -16 2732 167 49 78 chr9 88422427 88422617 -29440010 + MER21B LTR ERV1 319 513 -350 2161 128 0 3 chr9 88422617 88422923 -29439704 + AluSq SINE Alu 5 309 -4 2732 167 49 78 chr9 88422923 88423293 -29439334 + MER21B LTR ERV1 513 862 -1 251 219 125 0 chr9 88423426 88423490 -29439137 + MLT1I LTR MaLR 280 351 -58 417 313 73 7 chr9 88424042 88424192 -29438435 - MIR3 SINE MIR -28 180 21 2262 110 13 0 chr9 88424665 88424966 -29437661 - AluSx SINE Alu -7 305 1 2087 135 7 0 chr9 88426907 88427211 -29435416 - AluSx SINE Alu -2 310 5 307 347 91 0 chr9 88427468 88427589 -29435038 + L2 LINE L2 3141 3272 0 3800 129 0 0 chr9 88427957 88428484 -29434143 + MER1A DNA MER1_type 1 527 0 2337 93 0 0 chr9 88428857 88429147 -29433480 - AluSg SINE Alu -20 290 1 561 107 0 0 chr9 88429222 88429297 -29433330 + Alu SINE Alu 1 75 -235 2223 122 3 0 chr9 88430562 88430873 -29431754 + AluSx SINE Alu 1 312 0 1383 92 0 0 chr9 88431090 88431264 -29431363 + AluSg/x SINE Alu 131 304 -6 307 248 117 14 chr9 88431750 88431895 -29430732 - MIR SINE MIR -29 233 74 2260 91 0 57 chr9 88432045 88432363 -29430264 + AluSq SINE Alu 1 300 -13 204 305 127 34 chr9 88432522 88432640 -29429987 + L2 LINE L2 2693 2821 -493 2060 143 7 3 chr9 88432964 88433271 -29429356 - AluJb SINE Alu -4 308 1 21 0 0 0 chr9 88433651 88433672 -29428955 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr9 88433931 88433954 -29428673 + AT_rich Low_complexity Low_complexity 1 23 0 945 200 22 16 chr9 88434387 88434572 -29428055 - MLT1E LTR MaLR -3 590 405 235 271 0 18 chr9 88434759 88434839 -29427788 - AluJ/monomer SINE Alu -7 295 236 218 295 39 0 chr9 88435917 88435995 -29426632 + MIR3 SINE MIR 124 204 -4 2289 58 0 10 chr9 88436538 88436832 -29425795 + AluSc SINE Alu 1 291 -18 237 228 76 66 chr9 88436864 88437061 -29425566 + L1 LINE L1 3115 3313 -2833 1409 132 151 81 chr9 88437248 88437506 -29425121 - L1MB8 LINE L1 0 6178 5887 2004 121 35 0 chr9 88437506 88437795 -29424832 - AluSx SINE Alu -13 299 1 1409 132 151 81 chr9 88437795 88437893 -29424734 - L1MB8 LINE L1 -291 5887 5797 1166 82 0 0 chr9 88438081 88438240 -29424387 - L1P LINE L1 -3621 2525 2367 209 280 107 27 chr9 88438615 88438690 -29423937 + MIR SINE MIR 111 191 -71 230 331 108 8 chr9 88438738 88438868 -29423759 + L3 LINE CR1 571 713 -864 197 370 50 10 chr9 88438888 88438988 -29423639 - L3 LINE CR1 -462 1115 1012 526 310 124 57 chr9 88439020 88440107 -29422520 - L2 LINE L2 0 3272 2092 219 282 12 24 chr9 88440119 88440204 -29422423 - L2 LINE L2 -1335 1979 1896 426 246 34 77 chr9 88440214 88440421 -29422206 - LTR67 LTR ERVL -7 550 353 589 204 26 0 chr9 88441672 88441785 -29420842 - MIR3 SINE MIR -9 199 84 593 238 34 0 chr9 88442741 88442888 -29419739 - MER5A DNA MER1_type -37 152 1 201 39 0 0 chr9 88443374 88443400 -29419227 + (A)n Simple_repeat Simple_repeat 1 26 0 837 230 95 0 chr9 88443476 88443676 -29418951 + MER58A DNA MER1_type 5 223 -1 224 0 0 122 chr9 88443739 88443780 -29418847 + (A)n Simple_repeat Simple_repeat 1 36 0 265 146 22 45 chr9 88444858 88444947 -29417680 + GA-rich Low_complexity Low_complexity 1 87 0 1131 104 58 0 chr9 88444963 88445136 -29417491 - AluSg/x SINE Alu 0 312 130 318 288 193 0 chr9 88445984 88446159 -29416468 + MER20B DNA MER1_type 4 213 -6 1515 123 0 0 chr9 88446646 88446857 -29415770 + AluSx SINE Alu 1 211 -101 770 158 0 0 chr9 88446868 88446982 -29415645 - FLAM_C SINE Alu -15 118 5 784 199 0 50 chr9 88447526 88447687 -29414940 - AluJo SINE Alu -9 293 141 22 0 0 0 chr9 88447700 88447722 -29414905 + AT_rich Low_complexity Low_complexity 1 22 0 400 282 42 0 chr9 88447748 88447890 -29414737 + MER103 DNA DNA 12 159 -7 28 0 0 0 chr9 88448217 88448245 -29414382 + AT_rich Low_complexity Low_complexity 1 28 0 182 105 26 0 chr9 88448318 88448356 -29414271 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 532 295 57 27 chr9 88448818 88449073 -29413554 - MIR SINE MIR 0 262 10 842 161 8 0 chr9 88449140 88449270 -29413357 - AluJo SINE Alu -170 132 2 2384 61 0 0 chr9 88449304 88449599 -29413028 + AluY SINE Alu 1 295 -16 231 36 0 0 chr9 88449599 88449627 -29413000 + (TA)n Simple_repeat Simple_repeat 2 29 0 370 288 57 45 chr9 88450670 88450847 -29411780 - MIR3 SINE MIR -16 192 14 454 216 60 52 chr9 88451153 88451287 -29411340 - MER5B DNA MER1_type -29 149 15 984 243 14 9 chr9 88451310 88451532 -29411095 + MER58A DNA MER1_type 2 224 0 284 289 133 8 chr9 88452220 88452348 -29410279 - L2 LINE L2 -4 3268 3125 227 336 133 16 chr9 88452678 88452806 -29409821 - L3 LINE CR1 -75 1502 1360 213 330 40 30 chr9 88452972 88453072 -29409555 - L3 LINE CR1 -539 1038 938 534 242 130 19 chr9 88455436 88455597 -29407030 + MIR SINE MIR 2 180 -82 926 202 49 20 chr9 88455609 88455812 -29406815 + MER3 DNA MER1_type 1 209 0 342 275 55 75 chr9 88457068 88457187 -29405440 + L1ME4a LINE L1 5780 5895 -226 2006 117 3 23 chr9 88457187 88457495 -29405132 + AluSq SINE Alu 1 302 -11 342 275 55 75 chr9 88457495 88457575 -29405052 + L1ME4a LINE L1 5895 5975 -146 1829 147 7 3 chr9 88458239 88458531 -29404096 + AluJb SINE Alu 1 293 -19 262 273 0 0 chr9 88459282 88459348 -29403279 + GA-rich Low_complexity Low_complexity 4 69 0 335 299 0 0 chr9 88459635 88459732 -29402895 + MER5A DNA MER1_type 13 109 -80 865 237 11 0 chr9 88459797 88459983 -29402644 - MER5A DNA MER1_type -1 188 1 420 296 0 0 chr9 88460094 88460192 -29402435 + MIR SINE MIR 50 147 -115 1754 143 30 27 chr9 88460595 88460896 -29401731 - AluJb SINE Alu -10 302 1 2304 99 0 0 chr9 88460937 88461241 -29401386 - AluSx SINE Alu -8 304 1 542 145 0 0 chr9 88461942 88462025 -29400602 + AluJb SINE Alu 3 85 -227 285 51 0 0 chr9 88462967 88463006 -29399621 + (TG)n Simple_repeat Simple_repeat 1 39 0 205 366 38 11 chr9 88463009 88463192 -29399435 + L2 LINE L2 2577 2764 -550 375 295 116 0 chr9 88463414 88463526 -29399101 + L2 LINE L2 3139 3263 -9 28 29 0 0 chr9 88463935 88463970 -29398657 + AT_rich Low_complexity Low_complexity 1 35 0 289 257 129 10 chr9 88464323 88464424 -29398203 - MIR SINE MIR -118 144 32 276 77 0 0 chr9 88464553 88464592 -29398035 + (GA)n Simple_repeat Simple_repeat 1 39 0 210 37 0 0 chr9 88466071 88466098 -29396529 + (CA)n Simple_repeat Simple_repeat 1 27 0 290 342 0 62 chr9 88466266 88466427 -29396200 + MER5B DNA MER1_type 25 175 -3 1318 129 0 19 chr9 88466702 88466912 -29395715 + AluJb SINE Alu 87 292 -20 2073 135 0 3 chr9 88467212 88467524 -29395103 + AluSx SINE Alu 1 311 -1 218 295 39 0 chr9 88468522 88468600 -29394027 + MIR3 SINE MIR 124 204 -4 2572 23 3 0 chr9 88469143 88469443 -29393184 + AluY SINE Alu 1 301 -10 247 339 46 9 chr9 88470033 88470142 -29392485 + L2 LINE L2 3160 3272 0 25 0 0 0 chr9 88470142 88470167 -29392460 + AT_rich Low_complexity Low_complexity 1 25 0 363 241 115 17 chr9 88470585 88470770 -29391857 + L1MC4 LINE L1 5686 5805 -361 22 0 0 0 chr9 88470789 88470811 -29391816 + AT_rich Low_complexity Low_complexity 1 22 0 352 237 193 44 chr9 88471343 88471478 -29391149 + MER5B DNA MER1_type 3 157 -21 1568 174 11 21 chr9 88472701 88472983 -29389644 + AluJo SINE Alu 1 279 -33 1870 158 0 0 chr9 88472997 88473282 -29389345 + AluSx SINE Alu 1 285 -27 187 235 15 88 chr9 88473439 88473507 -29389120 - MIR SINE MIR -179 83 21 2233 104 0 0 chr9 88473769 88474068 -29388559 - AluSx SINE Alu -8 304 6 241 315 0 33 chr9 88474122 88474214 -29388413 + MIR SINE MIR 36 124 -84 407 302 107 18 chr9 88475219 88475444 -29387183 + MIR SINE MIR 4 248 -14 301 263 72 53 chr9 88476197 88476349 -29386278 - MIR SINE MIR -65 197 43 255 307 118 31 chr9 88476281 88476408 -29386219 + MIR3 SINE MIR 6 143 -65 * 370 274 96 55 chr9 88476518 88476664 -29385963 + L1MC4 LINE L1 6494 6702 -1140 441 0 0 0 chr9 88476682 88476731 -29385896 + (CA)n Simple_repeat Simple_repeat 2 50 0 214 273 114 53 chr9 88476806 88476938 -29385689 - L2 LINE L2 -212 3060 2921 465 333 48 6 chr9 88477452 88477617 -29385010 - MIR3 SINE MIR -7 201 30 383 243 52 42 chr9 88479123 88479353 -29383274 + L2 LINE L2 3008 3309 -4 1771 142 0 63 chr9 88479712 88480044 -29382583 - AluJb SINE Alu -1 311 1 219 346 137 33 chr9 88480848 88481001 -29381626 - MIR SINE MIR -90 172 4 204 339 128 9 chr9 88481012 88481121 -29381506 + MIR SINE MIR 24 145 -63 397 199 114 72 chr9 88481297 88481463 -29381164 + L1MC5 LINE L1 6930 7102 -859 4249 171 69 31 chr9 88481464 88481948 -29380679 + L1MB8 LINE L1 4970 5434 -744 1671 114 70 15 chr9 88481948 88482274 -29380353 + AluSx SINE Alu 1 312 0 4249 171 69 31 chr9 88482274 88482953 -29379674 + L1MB8 LINE L1 5434 6177 -1 785 180 20 55 chr9 88482950 88483150 -29379477 + L1MC5 LINE L1 7091 7283 -678 * 325 188 7 130 chr9 88483176 88483222 -29379405 + L1MC5 LINE L1 7405 7455 -506 2101 76 31 3 chr9 88483222 88483510 -29379117 - AluSq SINE Alu -17 296 1 325 188 7 130 chr9 88483510 88483601 -29379026 + L1MC5 LINE L1 7455 7525 -436 399 257 133 60 chr9 88484051 88484269 -29378358 + L1ME4a LINE L1 5774 6007 -114 1713 161 109 3 chr9 88484270 88484333 -29378294 - MER47A DNA MER2_type -1957 366 311 1476 167 53 43 chr9 88484333 88484633 -29377994 + AluJo SINE Alu 1 303 -9 1713 161 109 3 chr9 88484633 88484899 -29377728 - MER47A DNA MER2_type -2012 311 2 1688 158 17 0 chr9 88484946 88485237 -29377390 - AluJo SINE Alu -16 296 1 258 247 118 32 chr9 88485472 88485565 -29377062 + MIR3 SINE MIR 4 104 -104 273 226 23 187 chr9 88486355 88486665 -29375962 + L2 LINE L2 3007 3265 -7 714 82 0 0 chr9 88486679 88486777 -29375850 + (TGGA)n Simple_repeat Simple_repeat 1 98 0 651 254 108 9 chr9 88487418 88487631 -29374996 - MIR SINE MIR -19 243 10 182 304 0 0 chr9 88487681 88487727 -29374900 - MIR3 SINE MIR -6 202 157 476 286 161 15 chr9 88487735 88487934 -29374693 + MIR SINE MIR 35 262 0 1573 181 45 0 chr9 88488003 88488290 -29374337 + AluJb SINE Alu 1 300 -12 517 289 53 53 chr9 88488679 88488887 -29373740 - MIR SINE MIR -2 260 53 823 224 0 18 chr9 88488905 88489070 -29373557 + AluJb SINE Alu 137 298 -14 1645 154 0 38 chr9 88489947 88490239 -29372388 - AluSx SINE Alu -31 281 1 505 252 52 7 chr9 88490893 88491028 -29371599 - L2 LINE L2 0 3313 3173 21 36 0 0 chr9 88491643 88491671 -29370956 + AT_rich Low_complexity Low_complexity 1 28 0 1713 144 0 18 chr9 88492069 88492347 -29370280 + AluSx SINE Alu 1 273 -39 1730 124 0 0 chr9 88492447 88492689 -29369938 - AluSx SINE Alu -70 242 1 805 272 65 78 chr9 88493375 88493575 -29369052 + MLT1K LTR MaLR 97 298 -290 918 176 79 49 chr9 88493575 88493625 -29369002 + ORSL DNA AcHobo 1 48 -227 2179 82 20 0 chr9 88493625 88493917 -29368710 - AluY SINE Alu -13 298 1 918 176 79 49 chr9 88493917 88494133 -29368494 + ORSL DNA AcHobo 48 275 0 805 272 65 78 chr9 88494133 88494396 -29368231 + MLT1K LTR MaLR 298 554 -34 351 169 0 0 chr9 88494996 88495067 -29367560 + (TG)n Simple_repeat Simple_repeat 2 72 0 447 295 93 0 chr9 88495177 88495316 -29367311 + MIR3 SINE MIR 16 167 -41 183 261 0 43 chr9 88495352 88495398 -29367229 - L2 LINE L2 -14 3299 3256 196 271 0 0 chr9 88495441 88495489 -29367138 + L2 LINE L2 3265 3312 -1 218 178 44 0 chr9 88495490 88495535 -29367092 + GA-rich Low_complexity Low_complexity 1 47 0 764 253 6 0 chr9 88496119 88496293 -29366334 + MER117 DNA MER1_type 2 176 -21 209 167 0 0 chr9 88497013 88497049 -29365578 - L2 LINE L2 -27 3245 3210 1493 176 27 10 chr9 88497419 88497714 -29364913 + AluJb SINE Alu 1 300 -12 207 234 43 0 chr9 88497908 88497955 -29364672 - L3b LINE CR1 -4 1579 1531 1989 127 0 0 chr9 88497998 88498325 -29364302 + AluSx SINE Alu 1 327 0 3373 170 8 20 chr9 88498331 88498943 -29363684 + L1MB7 LINE L1 5521 6125 -59 330 194 370 9 chr9 88498970 88499078 -29363549 + MER5B DNA MER1_type 32 178 0 280 233 87 60 chr9 88499084 88499234 -29363393 - MIR3 SINE MIR -51 157 4 * 289 319 82 78 chr9 88499234 88499473 -29363154 + L2 LINE L2 3028 3267 -5 224 286 95 57 chr9 88499494 88499581 -29363046 - L2 LINE L2 -7 3265 3172 2015 145 68 31 chr9 88499581 88499932 -29362695 - THE1B LTR MaLR 0 364 1 224 286 95 57 chr9 88499932 88499949 -29362678 - L2 LINE L2 -100 3172 3157 300 265 37 52 chr9 88499997 88500133 -29362494 - L2 LINE L2 -220 3052 2919 321 301 90 32 chr9 88500196 88500352 -29362275 - L1M4 LINE L1 -1120 5026 4862 1511 233 115 15 chr9 88500374 88500842 -29361785 + LTR33A LTR ERVL 9 523 0 325 245 0 75 chr9 88500861 88500967 -29361660 + L1MC4 LINE L1 6606 6703 -1339 248 174 45 8 chr9 88500974 88501106 -29361521 + (TA)n Simple_repeat Simple_repeat 2 138 0 1566 178 7 7 chr9 88501106 88501399 -29361228 - AluJo SINE Alu -19 293 1 263 264 205 56 chr9 88501593 88501852 -29360775 - L1M4 LINE L1 -1495 4651 4432 2268 83 0 0 chr9 88501852 88502141 -29360486 - AluSc SINE Alu -20 289 1 263 264 205 56 chr9 88502141 88502490 -29360137 - L1M4 LINE L1 -1714 4432 3952 472 353 163 7 chr9 88502493 88502782 -29359845 - L3 LINE CR1 -1215 362 29 611 88 0 0 chr9 88503248 88503339 -29359288 + L1MA1 LINE L1 6210 6300 -2 755 255 87 15 chr9 88504381 88504577 -29358050 - MIR SINE MIR -51 211 2 1757 141 14 14 chr9 88505145 88505436 -29357191 + AluSx SINE Alu 9 299 -13 2037 129 7 0 chr9 88506260 88506555 -29356072 - AluSx SINE Alu -15 297 1 2138 116 0 3 chr9 88507793 88508095 -29354532 - AluSx SINE Alu -11 301 1 552 257 90 79 chr9 88508244 88508700 -29353927 + L1MC/D LINE L1 5339 5799 -2009 1541 167 33 10 chr9 88508846 88509151 -29353476 + AluJo SINE Alu 1 312 0 352 204 20 71 chr9 88510065 88510163 -29352464 - MER103 DNA DNA -43 123 31 526 250 55 85 chr9 88510453 88510781 -29351846 + L1ME4a LINE L1 5352 5669 -452 190 250 21 0 chr9 88510922 88510970 -29351657 - MER5A DNA MER1_type -20 169 121 2274 98 0 3 chr9 88511706 88512013 -29350614 - AluSq SINE Alu -7 306 1 940 198 61 5 chr9 88512227 88512424 -29350203 - MER3 DNA MER1_type 0 209 2 849 138 8 0 chr9 88512552 88512682 -29349945 - FLAM_C SINE Alu -10 133 3 1689 186 0 6 chr9 88512893 88513205 -29349422 - AluJo SINE Alu -2 310 1 1637 178 10 7 chr9 88514251 88514554 -29348073 - AluJb SINE Alu -8 304 1 23 0 0 0 chr9 88514643 88514666 -29347961 + AT_rich Low_complexity Low_complexity 1 23 0 2012 149 0 0 chr9 88515158 88515467 -29347160 + AluSx SINE Alu 1 309 -3 692 223 83 13 chr9 88515538 88515695 -29346932 - MER5B DNA MER1_type 0 178 11 470 206 108 67 chr9 88516816 88516877 -29345750 + L1ME4a LINE L1 5650 5707 -414 2252 68 0 0 chr9 88516877 88517181 -29345446 - AluSg SINE Alu 0 304 1 470 206 108 67 chr9 88517181 88517341 -29345286 + L1ME4a LINE L1 5707 5881 -240 324 221 116 0 chr9 88517378 88517473 -29345154 + L1ME4a LINE L1 5946 6051 -70 457 244 66 52 chr9 88517557 88517770 -29344857 - LTR33 LTR ERVL -2 519 304 422 283 44 50 chr9 88517856 88518036 -29344591 - LTR33 LTR ERVL -340 181 3 813 183 0 0 chr9 88518051 88518177 -29344450 - FLAM_A SINE Alu -4 129 4 410 288 78 7 chr9 88518484 88518637 -29343990 + MIR SINE MIR 90 253 -9 478 333 94 0 chr9 88518638 88518809 -29343818 - L3 LINE CR1 -208 1369 1183 1513 184 0 0 chr9 88518838 88519147 -29343480 + AluJb SINE Alu 1 309 0 257 212 91 0 chr9 88519439 88519505 -29343122 + MLT1K LTR MaLR 504 575 -13 386 284 18 18 chr9 88519541 88519650 -29342977 + MIR SINE MIR 21 129 -133 816 139 0 0 chr9 88519678 88519800 -29342827 - FLAM_C SINE Alu -17 126 5 197 369 90 9 chr9 88519808 88519919 -29342708 + MIR SINE MIR 119 238 -24 264 246 157 30 chr9 88519962 88520096 -29342531 - L3 LINE CR1 -641 936 786 214 250 18 18 chr9 88520385 88520441 -29342186 + MIR3 SINE MIR 14 69 -139 263 259 82 63 chr9 88520524 88520682 -29341945 - L2 LINE L2 -4 3309 3149 298 164 0 82 chr9 88520689 88520762 -29341865 - MLT1J2 LTR MaLR -14 436 370 401 289 40 46 chr9 88520851 88521024 -29341603 - MLT1I LTR MaLR -170 239 68 1039 180 12 0 chr9 88521143 88521315 -29341312 - FAM SINE Alu -1 174 1 281 245 17 3 chr9 88521317 88521433 -29341194 - L1ME LINE L1 -4915 1627 1514 368 293 23 0 chr9 88521516 88521649 -29340978 - L1ME LINE L1 -5043 1591 1456 826 122 0 0 chr9 88521666 88521781 -29340846 - FLAM_C SINE Alu -23 120 6 262 305 165 37 chr9 88521869 88522033 -29340594 - L1ME LINE L1 -5880 754 570 566 229 110 0 chr9 88522286 88522404 -29340223 - FLAM_A SINE Alu -2 131 1 295 276 125 68 chr9 88522423 88522557 -29340070 + LTR16C LTR ERVL 288 438 -53 1346 171 13 70 chr9 88522557 88522855 -29339772 - AluJo SINE Alu -30 282 2 295 276 125 68 chr9 88522855 88522912 -29339715 + LTR16C LTR ERVL 438 490 -1 2258 85 3 0 chr9 88523019 88523314 -29339313 - AluSp SINE Alu -17 296 1 414 301 64 56 chr9 88523923 88524265 -29338362 - MLT1J LTR MaLR -166 345 1 376 282 111 38 chr9 88524277 88524499 -29338128 + MIR SINE MIR 20 245 -17 264 292 45 11 chr9 88524568 88524657 -29337970 + L2 LINE L2 3180 3271 -1 216 260 62 42 chr9 88524675 88524771 -29337856 - MIR SINE MIR -68 140 43 1314 147 0 43 chr9 88524792 88525024 -29337603 - AluJb SINE Alu -3 309 88 774 306 50 21 chr9 88525077 88525505 -29337122 + LTR16A LTR ERVL 6 453 -4 2301 94 10 0 chr9 88525693 88526002 -29336625 - AluSx SINE Alu 0 312 1 1921 152 0 13 chr9 88526383 88526699 -29335928 - AluSx SINE Alu 0 312 1 1077 171 9 38 chr9 88527268 88527322 -29335305 - MER3 DNA MER1_type -5 204 150 2079 98 0 29 chr9 88527322 88527628 -29334999 + AluSx SINE Alu 1 297 -15 1077 171 9 38 chr9 88527628 88527783 -29334844 - MER3 DNA MER1_type -59 150 1 281 337 0 0 chr9 88527806 88527898 -29334729 + L2 LINE L2 3180 3271 -1 290 315 71 8 chr9 88527916 88528043 -29334584 - MIR3 SINE MIR -68 140 6 237 234 131 28 chr9 88528185 88528292 -29334335 - L1ME4a LINE L1 -37 6084 5967 580 129 12 0 chr9 88528354 88528439 -29334188 + AluS SINE Alu 2 87 -226 35 0 0 0 chr9 88528548 88528583 -29334044 + GC_rich Low_complexity Low_complexity 1 35 0 206 128 26 0 chr9 88528667 88528706 -29333921 + (CCG)n Simple_repeat Simple_repeat 2 41 0 52 109 0 0 chr9 88528815 88529035 -29333592 + GC_rich Low_complexity Low_complexity 1 220 0 25 65 0 0 chr9 88529087 88529133 -29333494 + GC_rich Low_complexity Low_complexity 1 46 0 285 29 0 0 chr9 88529195 88529229 -29333398 + (CCG)n Simple_repeat Simple_repeat 1 34 0 236 163 0 185 chr9 88529505 88529597 -29333030 + MIR3 SINE MIR 124 198 -10 * 309 252 39 39 chr9 88529591 88529694 -29332933 - MIR3 SINE MIR -14 194 92 595 255 128 17 chr9 88529999 88530234 -29332393 - MIR SINE MIR 0 262 2 300 318 42 47 chr9 88530358 88530550 -29332077 - MIR SINE MIR -23 239 49 1903 205 156 0 chr9 88530776 88531211 -29331416 + MLT1D LTR MaLR 1 503 -2 1596 155 3 55 chr9 88531232 88531542 -29331085 + AluJb SINE Alu 1 294 -18 188 234 21 43 chr9 88531618 88531665 -29330962 + L2 LINE L2 3182 3227 -86 237 65 0 0 chr9 88531665 88531696 -29330931 + (TCCC)n Simple_repeat Simple_repeat 1 31 0 1040 189 45 0 chr9 88531696 88531897 -29330730 - AluJb SINE Alu -18 294 85 423 221 0 47 chr9 88531906 88531992 -29330635 + L2 LINE L2 3188 3269 -3 315 268 56 0 chr9 88531998 88532069 -29330558 - MIR SINE MIR -70 192 118 218 235 196 10 chr9 88532164 88532266 -29330361 - MIR SINE MIR -29 233 113 1564 139 73 127 chr9 88532583 88532725 -29329902 + MLT1A2 LTR MaLR 1 149 -225 686 182 8 30 chr9 88532725 88532857 -29329770 + FLAM_C SINE Alu 2 130 -3 1564 139 73 127 chr9 88532857 88532871 -29329756 + MLT1A2 LTR MaLR 149 162 -212 750 118 9 0 chr9 88532871 88532981 -29329646 + HY1 scRNA scRNA 1 111 -1 1564 139 73 127 chr9 88532981 88533218 -29329409 + MLT1A2 LTR MaLR 162 374 0 232 200 0 0 chr9 88533719 88533764 -29328863 - L2 LINE L2 0 3313 3269 1454 256 68 43 chr9 88533861 88534346 -29328281 + MLT1K LTR MaLR 2 498 -90 254 221 52 13 chr9 88534606 88534683 -29327944 + L2 LINE L2 2228 2307 -1007 993 163 0 77 chr9 88535103 88535324 -29327303 + MER3 DNA MER1_type 6 209 0 204 270 91 91 chr9 88535770 88536032 -29326595 - L2 LINE L2 -1287 2027 1763 2064 166 0 3 chr9 88536032 88536345 -29326282 + AluJo SINE Alu 1 312 0 204 270 91 91 chr9 88536345 88536389 -29326238 - L2 LINE L2 -1550 1764 1721 640 182 0 74 chr9 88536391 88536539 -29326088 + FLAM_A SINE Alu 6 142 0 210 163 93 0 chr9 88536580 88536623 -29326004 + MIR SINE MIR 120 166 -96 2061 120 3 41 chr9 88536766 88537082 -29325545 - AluSx SINE Alu -8 304 1 504 234 21 99 chr9 88537436 88537628 -29324999 - MIR SINE MIR -49 213 37 2334 91 0 3 chr9 88538691 88538988 -29323639 + AluSg SINE Alu 1 296 -14 360 0 0 0 chr9 88539126 88539166 -29323461 + (CA)n Simple_repeat Simple_repeat 1 40 0 666 267 99 0 chr9 88539265 88539456 -29323171 + MIR SINE MIR 53 262 0 1757 187 5 39 chr9 88540037 88540341 -29322286 + L1MB4 LINE L1 4862 5148 -998 2487 24 41 7 chr9 88540341 88540633 -29321994 - AluY SINE Alu -9 302 1 1757 187 5 39 chr9 88540633 88540767 -29321860 + L1MB4 LINE L1 5148 5285 -861 1965 122 4 0 chr9 88540769 88541040 -29321587 + AluSg SINE Alu 9 280 -30 4160 178 17 31 chr9 88541062 88541983 -29320644 + L1MB4 LINE L1 5266 6173 -7 935 146 42 24 chr9 88541983 88542148 -29320479 - AluJb SINE Alu -21 291 124 400 225 45 0 chr9 88542164 88542253 -29320374 + MIR SINE MIR 61 153 -109 400 132 0 79 chr9 88542457 88542533 -29320094 + FLAM_A SINE Alu 1 70 -62 2149 133 3 0 chr9 88542713 88543013 -29319614 - AluSx SINE Alu -11 301 1 1426 258 102 42 chr9 88543671 88544175 -29318452 - MER115 DNA AcHobo 0 693 150 2411 96 0 3 chr9 88544175 88544476 -29318151 + AluSq SINE Alu 1 300 -13 1426 258 102 42 chr9 88544476 88544537 -29318090 - MER115 DNA AcHobo -543 150 94 271 305 46 38 chr9 88544816 88544947 -29317680 - MIR SINE MIR -58 150 19 804 132 0 8 chr9 88545195 88545316 -29317311 + FLAM_C SINE Alu 21 140 -3 1930 124 4 7 chr9 88545336 88545610 -29317017 - AluSx SINE Alu -37 275 3 221 330 94 77 chr9 88546225 88546284 -29316343 + L2 LINE L2 2450 2506 -808 1436 177 127 0 chr9 88546284 88546544 -29316083 - AluJb SINE Alu -8 294 2 221 330 94 77 chr9 88546544 88546659 -29315968 + L2 LINE L2 2506 2618 -696 1252 235 52 55 chr9 88546659 88546944 -29315683 + MLT1A1 LTR MaLR 1 286 -79 1718 189 13 16 chr9 88546944 88547082 -29315545 + AluJo SINE Alu 1 138 -174 2640 60 0 10 chr9 88547082 88547396 -29315231 + AluY SINE Alu 1 311 0 1718 189 13 16 chr9 88547396 88547569 -29315058 + AluJo SINE Alu 138 311 -1 1252 235 52 55 chr9 88547569 88547649 -29314978 + MLT1A1 LTR MaLR 286 365 0 221 330 94 77 chr9 88547649 88547992 -29314635 + L2 LINE L2 2618 2977 -337 537 323 65 32 chr9 88548318 88548628 -29313999 - L3 LINE CR1 -581 996 677 202 206 29 44 chr9 88548754 88548822 -29313805 + MIR SINE MIR 28 94 -168 381 339 132 29 chr9 88548952 88549232 -29313395 - L3 LINE CR1 -1060 517 209 317 109 18 0 chr9 88549372 88549427 -29313200 + (CA)n Simple_repeat Simple_repeat 2 57 0 294 346 73 15 chr9 88549738 88549874 -29312753 - MIR3 SINE MIR -62 146 3 187 273 156 0 chr9 88549953 88550030 -29312597 - L2 LINE L2 -8 3264 3176 1878 228 102 18 chr9 88551327 88551837 -29310790 + MLT1H1 LTR MaLR 1 553 -2 2249 121 0 3 chr9 88552020 88552325 -29310302 - AluSq SINE Alu -7 306 3 198 0 0 0 chr9 88552342 88552364 -29310263 + (A)n Simple_repeat Simple_repeat 1 22 0 293 259 83 66 chr9 88552494 88552668 -29309959 + L1MC5 LINE L1 7480 7650 -311 2411 66 7 10 chr9 88552668 88552969 -29309658 + AluY SINE Alu 1 300 -11 1585 168 23 49 chr9 88552978 88553282 -29309345 + AluJo SINE Alu 1 296 -16 293 259 83 66 chr9 88553282 88553316 -29309311 + L1MC5 LINE L1 7657 7689 -272 315 0 0 0 chr9 88553316 88553351 -29309276 + (TG)n Simple_repeat Simple_repeat 2 36 0 293 259 83 66 chr9 88553351 88553432 -29309195 + L1MC5 LINE L1 7689 7785 -176 259 317 154 24 chr9 88554156 88554279 -29308348 - MIR3 SINE MIR -40 168 30 218 308 11 55 chr9 88555016 88555107 -29307520 + MIR SINE MIR 20 106 -156 1582 171 63 14 chr9 88555247 88555534 -29307093 + AluJo SINE Alu 1 301 -11 1999 126 9 123 chr9 88555573 88556011 -29306616 + MLT1B LTR MaLR 1 388 -2 401 329 61 6 chr9 88556017 88556181 -29306446 + MIR SINE MIR 20 192 -70 2443 91 0 0 chr9 88556957 88557255 -29305372 - AluSg SINE Alu -12 298 1 274 313 25 0 chr9 88557758 88557838 -29304789 - Charlie8 DNA MER1_type -2197 220 139 1686 169 0 40 chr9 88557918 88558219 -29304408 - AluJo SINE Alu -11 301 13 659 258 66 48 chr9 88558238 88558509 -29304118 - L1ME3A LINE L1 -1 6169 5894 2025 159 0 6 chr9 88559147 88559461 -29303166 + AluSx SINE Alu 1 312 0 238 197 113 14 chr9 88559869 88559940 -29302687 - L1MC5 LINE L1 -52 7909 7832 535 234 73 46 chr9 88560034 88560295 -29302332 - L1ME2 LINE L1 -32 6132 5865 763 193 0 21 chr9 88560421 88560566 -29302061 + FRAM SINE Alu 25 166 -10 1525 108 12 39 chr9 88560930 88561189 -29301438 - MLT1B LTR MaLR -138 252 1 1045 187 0 0 chr9 88561578 88561744 -29300883 + FRAM SINE Alu 1 166 0 502 248 117 63 chr9 88561747 88561969 -29300658 + L1ME4a LINE L1 5874 6107 -14 1845 160 0 24 chr9 88562003 88562296 -29300331 - AluJb SINE Alu -26 286 1 231 36 0 0 chr9 88562299 88562327 -29300300 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 763 157 0 16 chr9 88562327 88562448 -29300179 - FLAM_C SINE Alu -23 120 2 23 0 0 0 chr9 88562493 88562516 -29300111 + AT_rich Low_complexity Low_complexity 1 23 0 732 291 102 0 chr9 88562657 88562853 -29299774 + MIR SINE MIR 26 241 -21 381 273 77 28 chr9 88563233 88563376 -29299251 + MIR SINE MIR 72 221 -41 1392 202 77 0 chr9 88563390 88563687 -29298940 + L1MB5 LINE L1 5855 6174 0 2199 115 3 0 chr9 88563980 88564284 -29298343 + AluSx SINE Alu 1 305 -7 2254 118 0 10 chr9 88564284 88564598 -29298029 + AluSx SINE Alu 1 311 -1 566 249 5 83 chr9 88564914 88564973 -29297654 - MER5B DNA MER1_type 0 178 116 2098 81 7 7 chr9 88564973 88565245 -29297382 + AluSq SINE Alu 1 272 -41 312 48 0 0 chr9 88565246 88565288 -29297339 + (CAAA)n Simple_repeat Simple_repeat 1 42 0 566 249 5 83 chr9 88565288 88565419 -29297208 - MER5B DNA MER1_type -61 117 1 182 287 0 79 chr9 88566593 88566694 -29295933 + L3 LINE CR1 1459 1551 -26 292 277 52 19 chr9 88567017 88567172 -29295455 + L1MC5 LINE L1 7394 7553 -408 690 187 0 49 chr9 88567237 88567360 -29295267 - FLAM_A SINE Alu -18 124 8 412 228 69 56 chr9 88567372 88567439 -29295188 + L1MC5 LINE L1 7690 7755 -206 2069 126 14 3 chr9 88567439 88567732 -29294895 + AluSx SINE Alu 1 296 -16 412 228 69 56 chr9 88567732 88567897 -29294730 + L1MC5 LINE L1 7755 7925 -36 713 212 0 30 chr9 88568262 88568394 -29294233 + FLAM_C SINE Alu 2 129 -14 315 0 0 0 chr9 88568399 88568434 -29294193 + (GA)n Simple_repeat Simple_repeat 2 36 0 461 267 183 30 chr9 88568444 88568875 -29293752 + L1ME3A LINE L1 5387 5883 -287 2407 136 5 23 chr9 88569443 88569876 -29292751 + L1MB3 LINE L1 5759 6183 0 195 276 35 35 chr9 88570411 88570498 -29292129 + MIR3 SINE MIR 11 97 -111 509 263 15 23 chr9 88571214 88571347 -29291280 + MIR SINE MIR 66 197 -65 257 289 186 33 chr9 88571494 88571604 -29291023 + L2 LINE L2 2925 3017 -255 761 164 0 22 chr9 88571604 88571738 -29290889 + AluJo SINE Alu 3 133 -169 257 289 186 33 chr9 88571738 88571928 -29290699 + L2 LINE L2 3017 3271 -1 331 287 91 35 chr9 88573924 88574067 -29288560 + MER5A DNA MER1_type 27 177 -12 247 319 126 17 chr9 88574240 88574359 -29288268 + MIR3 SINE MIR 59 190 -18 233 274 55 14 chr9 88574722 88574795 -29287832 - MIR SINE MIR -55 153 78 592 223 68 44 chr9 88575015 88575221 -29287406 + L3 LINE CR1 880 1090 -487 1623 198 13 19 chr9 88575463 88575771 -29286856 + AluJo SINE Alu 1 306 -6 231 246 115 0 chr9 88576075 88576136 -29286491 + L2 LINE L2 3188 3255 -17 279 0 0 0 chr9 88576794 88576825 -29285802 + (TG)n Simple_repeat Simple_repeat 1 31 0 48 85 0 0 chr9 88578922 88579040 -29283587 + GC_rich Low_complexity Low_complexity 1 118 0 182 105 26 0 chr9 88579420 88579458 -29283169 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 28 0 0 0 chr9 88579531 88579559 -29283068 + AT_rich Low_complexity Low_complexity 1 28 0 375 282 42 0 chr9 88579886 88580028 -29282599 - MER103 DNA DNA -7 159 12 22 0 0 0 chr9 88580054 88580076 -29282551 + AT_rich Low_complexity Low_complexity 1 22 0 789 205 0 50 chr9 88580089 88580250 -29282377 + AluJo SINE Alu 141 293 -9 797 171 0 0 chr9 88580791 88580908 -29281719 + FLAM_C SINE Alu 2 118 -15 1621 123 0 0 chr9 88580919 88581130 -29281497 - AluSx SINE Alu -101 211 1 1366 173 0 18 chr9 88581348 88581568 -29281059 + AluSx SINE Alu 61 276 -36 207 0 0 0 chr9 88581577 88581600 -29281027 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 258 309 36 24 chr9 88581803 88581887 -29280740 - MIR SINE MIR -21 241 157 27 49 0 0 chr9 88581962 88582003 -29280624 + AT_rich Low_complexity Low_complexity 1 41 0 345 361 136 0 chr9 88582037 88582206 -29280421 - MIR SINE MIR -64 198 7 2087 107 3 24 chr9 88582499 88582813 -29279814 - AluSq SINE Alu 0 308 1 1047 161 39 154 chr9 88582902 88583069 -29279558 + AluJo SINE Alu 1 124 -188 2081 121 0 0 chr9 88583069 88583403 -29279224 + AluSg SINE Alu 1 334 0 1047 161 39 154 chr9 88583403 88583520 -29279107 + AluJo SINE Alu 124 253 -59 2291 89 0 3 chr9 88583582 88583864 -29278763 + AluSx SINE Alu 11 291 -21 522 271 108 19 chr9 88583896 88584110 -29278517 - L1MC/D LINE L1 -1984 5824 5592 464 302 98 20 chr9 88584165 88584523 -29278104 - L1ME4a LINE L1 -82 6039 5654 327 297 62 55 chr9 88584565 88584643 -29277984 - L1ME4a LINE L1 -440 5681 5600 2058 120 24 0 chr9 88584643 88584935 -29277692 - AluSq SINE Alu -14 299 1 327 297 62 55 chr9 88584935 88585001 -29277626 - L1ME4a LINE L1 -521 5600 5536 233 281 92 7 chr9 88585059 88585212 -29277415 - L1ME4a LINE L1 -1 6120 5955 203 244 61 52 chr9 88585628 88585743 -29276884 - L2 LINE L2 -213 3059 2944 875 115 0 43 chr9 88585768 88585907 -29276720 + FLAM_C SINE Alu 1 133 -10 471 143 0 0 chr9 88586766 88586836 -29275791 + MLT1K LTR MaLR 519 588 0 310 265 82 10 chr9 88586947 88587045 -29275582 - L1ME4a LINE L1 -15 6106 6002 1664 133 34 0 chr9 88587046 88587309 -29275318 - AluSx SINE Alu -2 310 39 186 71 0 0 chr9 88587309 88587337 -29275290 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2117 102 0 0 chr9 88587337 88587622 -29275005 - AluSx SINE Alu -27 285 1 904 131 0 0 chr9 88587631 88587753 -29274874 - FLAM_C SINE Alu -9 124 3 1729 145 4 0 chr9 88587765 88588041 -29274586 - AluJb SINE Alu -18 294 18 270 163 70 12 chr9 88588081 88588167 -29274460 + (TCTA)n Simple_repeat Simple_repeat 1 91 0 733 236 71 94 chr9 88588171 88588438 -29274189 - MIR SINE MIR 0 262 2 1481 189 36 4 chr9 88588461 88588742 -29273885 + AluJo SINE Alu 1 290 -22 295 289 15 79 chr9 88588759 88588808 -29273819 - L1ME4a LINE L1 -346 5775 5724 2145 116 0 3 chr9 88588808 88589109 -29273518 - AluSc SINE Alu -9 300 1 295 289 15 79 chr9 88589109 88589367 -29273260 - L1ME4a LINE L1 -397 5724 5619 2558 170 25 14 chr9 88589490 88589867 -29272760 - L1MB7 LINE L1 -20 6164 5779 1775 152 0 32 chr9 88589867 88590176 -29272451 - AluJb SINE Alu -13 299 1 2558 170 25 14 chr9 88590176 88590280 -29272347 - L1MB7 LINE L1 -405 5779 5678 424 257 57 69 chr9 88591353 88591431 -29271196 + LTR67 LTR ERVL 101 178 -379 640 136 36 114 chr9 88591431 88591571 -29271056 - FLAM_C SINE Alu -4 129 1 424 257 57 69 chr9 88591571 88591667 -29270960 + LTR67 LTR ERVL 178 273 -284 1470 191 70 28 chr9 88592623 88592980 -29269647 + MLT1A2 LTR MaLR 3 374 0 748 181 0 0 chr9 88593047 88593163 -29269464 + FLAM_C SINE Alu 2 117 -26 23 0 0 0 chr9 88593166 88593189 -29269438 + AT_rich Low_complexity Low_complexity 1 23 0 2104 117 0 0 chr9 88593898 88594196 -29268431 + AluSx SINE Alu 1 298 -14 1357 258 118 37 chr9 88594315 88594746 -29267881 + MLT1J LTR MaLR 8 473 -38 2554 156 39 0 chr9 88595062 88595478 -29267149 + MSTB1 LTR MaLR 1 432 0 649 174 0 9 chr9 88595898 88596007 -29266620 + AluJo/FLAM SINE Alu 3 110 -202 244 196 22 0 chr9 88596007 88596053 -29266574 + Alu SINE Alu 245 291 -11 783 251 89 16 chr9 88596075 88596405 -29266222 + MLT1J LTR MaLR 3 397 -114 2250 130 37 8 chr9 88596491 88596844 -29265783 + THE1B LTR MaLR 1 363 -1 256 234 27 90 chr9 88597452 88597563 -29265064 - MIR3 SINE MIR -14 194 91 1586 164 68 0 chr9 88598599 88598716 -29263911 + AluJo SINE Alu 1 109 -203 567 0 0 0 chr9 88598716 88598779 -29263848 + (CA)n Simple_repeat Simple_repeat 2 64 0 1586 164 68 0 chr9 88598779 88598942 -29263685 + AluJo SINE Alu 109 300 -12 230 271 108 68 chr9 88599024 88599231 -29263396 - MIR SINE MIR -33 229 18 477 0 0 0 chr9 88601535 88601588 -29261039 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 1982 139 0 0 chr9 88601589 88601876 -29260751 - AluSx SINE Alu -25 287 1 251 341 23 39 chr9 88602099 88602228 -29260399 + L2 LINE L2 2954 3080 -192 180 0 0 0 chr9 88602338 88602358 -29260269 + (TGAA)n Simple_repeat Simple_repeat 3 22 0 195 228 53 35 chr9 88602366 88602423 -29260204 - MIR SINE MIR -116 146 89 2015 190 2 41 chr9 88602748 88603185 -29259442 - L1MB3 LINE L1 -67 6116 5697 291 350 14 21 chr9 88603900 88604040 -29258587 + MIR SINE MIR 9 147 -115 265 200 69 92 chr9 88605428 88605558 -29257069 + MIR SINE MIR 1 127 -81 2337 185 4 36 chr9 88606756 88607259 -29255368 - L1MB3 LINE L1 0 6183 5697 291 350 14 21 chr9 88607974 88608114 -29254513 + MIR SINE MIR 9 147 -115 183 300 0 0 chr9 88608373 88608423 -29254204 - MIR SINE MIR -72 136 87 317 258 62 78 chr9 88609221 88609349 -29253278 + MIR SINE MIR 7 132 -130 548 273 28 34 chr9 88609403 88609579 -29253048 - MIR SINE MIR -30 232 58 225 349 102 30 chr9 88610757 88611219 -29251408 - L2 LINE L2 -557 2757 2263 432 306 94 12 chr9 88611563 88611733 -29250894 - MIR SINE MIR -67 195 12 244 239 171 57 chr9 88614311 88614399 -29248228 + MER58 DNA MER1_type 2 99 -2321 1189 36 0 0 chr9 88614465 88614604 -29248023 + L1PA3 LINE L1 6014 6152 -3 364 331 40 13 chr9 88614891 88615042 -29247585 + MIR SINE MIR 57 211 -51 25 31 0 0 chr9 88615735 88615767 -29246860 + AT_rich Low_complexity Low_complexity 1 32 0 188 297 27 27 chr9 88616138 88616212 -29246415 - MIR SINE MIR -58 204 131 259 264 174 8 chr9 88616384 88616505 -29246122 - L1ME4a LINE L1 -34 6087 5947 2070 127 0 0 chr9 88616598 88616897 -29245730 - AluSx SINE Alu -13 299 1 455 277 108 12 chr9 88617154 88617320 -29245307 - L1ME4a LINE L1 -222 5899 5718 1954 118 3 3 chr9 88617367 88617654 -29244973 - AluSq SINE Alu 0 313 27 1781 157 14 0 chr9 88619875 88620155 -29242472 - AluSx SINE Alu -28 284 1 409 285 33 7 chr9 88620163 88620314 -29242313 - MIR SINE MIR -72 190 36 529 257 55 66 chr9 88620382 88620654 -29241973 - MER102b DNA MER1_type -1 340 72 847 127 64 51 chr9 88621508 88621665 -29240962 + FRAM SINE Alu 1 158 -18 415 204 140 0 chr9 88621670 88621763 -29240864 + L1MA9 LINE L1 6169 6274 -38 24 41 0 20 chr9 88621790 88621817 -29240810 + AT_rich Low_complexity Low_complexity 1 28 -20 1954 124 3 13 chr9 88621817 88622116 -29240511 - AluSx SINE Alu -16 296 1 24 41 0 20 chr9 88622116 88622137 -29240490 + AT_rich Low_complexity Low_complexity 28 48 0 432 308 164 0 chr9 88622293 88622439 -29240188 - MER5A DNA MER1_type -6 183 14 183 42 0 0 chr9 88622690 88622714 -29239913 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 389 48 0 32 chr9 88623003 88623066 -29239561 + L1PA6 LINE L1 6094 6154 0 263 71 12 107 chr9 88623066 88623150 -29239477 + (TA)n Simple_repeat Simple_repeat 1 76 0 539 206 222 0 chr9 88623313 88623493 -29239134 - MER58A DNA MER1_type -1 223 4 255 284 71 31 chr9 88623636 88623763 -29238864 + MIR SINE MIR 110 241 -21 1422 160 85 18 chr9 88623813 88624094 -29238533 + AluJb SINE Alu 1 300 -12 825 194 161 0 chr9 88625271 88625451 -29237176 - MER3 DNA MER1_type 0 209 1 449 295 25 0 chr9 88625453 88625575 -29237052 - MIR3 SINE MIR -3 205 81 606 51 0 0 chr9 88626382 88626460 -29236167 + (TCCA)n Simple_repeat Simple_repeat 1 78 0 517 340 82 38 chr9 88626460 88626751 -29235876 - L2 LINE L2 -16 3256 2953 492 334 63 49 chr9 88626825 88627256 -29235371 - L2 LINE L2 -571 2743 2307 1629 201 0 3 chr9 88627765 88628078 -29234549 - AluJb SINE Alu 0 312 1 1866 153 0 3 chr9 88679380 88679674 -29182953 + AluSx SINE Alu 3 295 -17 206 174 22 0 chr9 88679933 88679979 -29182648 + A-rich Low_complexity Low_complexity 5 51 0 364 198 0 2 chr9 88680319 88680387 -29182240 + MIR SINE MIR 92 159 -49 1134 264 231 0 chr9 88680475 88680925 -29181702 + MLT1H1 LTR MaLR 1 554 -1 238 263 274 0 chr9 88680964 88681059 -29181568 - MIR SINE MIR -123 139 19 1935 103 37 0 chr9 88681484 88681775 -29180852 + AluSx SINE Alu 1 301 0 2287 96 0 3 chr9 88681786 88682098 -29180529 + AluSx SINE Alu 1 311 -1 188 86 29 0 chr9 88682341 88682376 -29180251 + (TA)n Simple_repeat Simple_repeat 1 36 0 279 261 228 0 chr9 88682438 88682530 -29180097 + MIR SINE MIR 150 262 0 201 189 0 27 chr9 88683750 88683787 -29178840 + MIR SINE MIR 32 67 -141 183 277 59 41 chr9 88683922 88684027 -29178600 + MIR SINE MIR 4 113 -95 501 276 123 20 chr9 88684154 88684357 -29178270 - MIR SINE MIR -8 254 31 574 148 139 0 chr9 88684523 88684624 -29178003 + FLAM_A SINE Alu 4 118 -15 188 371 34 22 chr9 88685078 88685167 -29177460 + MIR SINE MIR 23 112 -150 724 276 32 40 chr9 88685183 88685433 -29177194 - MIR SINE MIR -5 257 10 1115 212 25 17 chr9 88685588 88685824 -29176803 - MER8 DNA MER2_type 0 239 2 390 264 52 58 chr9 88686583 88686738 -29175889 - L2 LINE L2 -1 3271 3118 680 275 55 34 chr9 88687811 88688047 -29174580 + MIR SINE MIR 20 260 -2 269 160 23 84 chr9 88688056 88688187 -29174440 + (TTATA)n Simple_repeat Simple_repeat 4 126 0 281 186 0 17 chr9 88688197 88688256 -29174371 - L1ME LINE L1 -375 5746 5689 242 287 87 35 chr9 88688650 88688765 -29173862 + L2 LINE L2 3133 3253 -19 1847 144 0 38 chr9 88689679 88689999 -29172628 + AluJb SINE Alu 1 308 -4 22 0 0 0 chr9 88690116 88690138 -29172489 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr9 88690386 88690409 -29172218 + AT_rich Low_complexity Low_complexity 1 23 0 933 164 6 0 chr9 88690476 88690635 -29171992 - AluJo/FRAM SINE Alu -19 293 134 1760 154 7 3 chr9 88690635 88690933 -29171694 - AluJo SINE Alu -13 299 1 355 297 157 11 chr9 88690957 88691142 -29171485 + MIR SINE MIR 22 233 -29 414 274 145 55 chr9 88691590 88691915 -29170712 + MLT1J2 LTR MaLR 67 420 -30 456 302 6 44 chr9 88692315 88692474 -29170153 + MIR SINE MIR 100 252 -10 343 324 133 14 chr9 88692527 88692737 -29169890 + MIR SINE MIR 15 249 -13 471 267 107 0 chr9 88695328 88695459 -29167168 - MER91B DNA MER1_type -42 148 4 180 346 62 0 chr9 88695545 88695626 -29167001 + MIR3 SINE MIR 83 168 -40 2164 116 0 0 chr9 88695952 88696254 -29166373 + AluSx SINE Alu 1 302 -10 239 248 168 10 chr9 88696351 88696452 -29166175 + L2 LINE L2 3137 3253 -19 335 314 160 6 chr9 88696715 88696871 -29165756 - MIR3 SINE MIR -26 182 3 314 340 72 21 chr9 88696974 88697168 -29165459 - L3 LINE CR1 -765 812 609 216 271 0 43 chr9 88697188 88697258 -29165369 - L2 LINE L2 -24 3248 3182 * 343 278 143 38 chr9 88697257 88697466 -29165161 - MIR SINE MIR -31 231 1 205 345 157 43 chr9 88697684 88697965 -29164662 + L2 LINE L2 2955 3267 -5 921 169 13 13 chr9 88698073 88698227 -29164400 - AluJo SINE Alu -8 294 141 1948 144 0 0 chr9 88698381 88698672 -29163955 - AluJb SINE Alu -20 292 2 641 271 128 0 chr9 88699017 88699220 -29163407 - MIR SINE MIR -21 241 13 180 262 0 24 chr9 88699328 88699370 -29163257 - MIR SINE MIR -62 146 106 1692 177 0 3 chr9 88699401 88699700 -29162927 - AluJb SINE Alu -12 300 3 823 179 8 0 chr9 88699701 88699835 -29162792 - AluJo SINE Alu -176 136 2 243 309 12 12 chr9 88700629 88700713 -29161914 + L2 LINE L2 3228 3311 -2 1216 166 151 4 chr9 88700767 88701045 -29161582 + MER33 DNA MER1_type 6 324 0 251 299 58 51 chr9 88701145 88701282 -29161345 + MIR SINE MIR 85 222 -40 21 0 0 0 chr9 88701797 88701818 -29160809 + AT_rich Low_complexity Low_complexity 1 21 0 237 368 0 28 chr9 88703104 88703210 -29159417 + MIR3 SINE MIR 58 160 -48 414 269 108 42 chr9 88703731 88703898 -29158729 + L3 LINE CR1 1393 1570 -7 327 250 68 11 chr9 88706276 88706364 -29156263 - MIR SINE MIR -70 192 100 34 24 0 0 chr9 88707346 88707387 -29155240 + AT_rich Low_complexity Low_complexity 1 41 0 735 178 25 0 chr9 88707436 88707554 -29155073 + FLAM_A SINE Alu 1 121 -12 231 346 118 0 chr9 88707565 88707692 -29154935 + L3 LINE CR1 907 1048 -529 445 285 93 16 chr9 88707781 88707974 -29154653 - L3 LINE CR1 -199 1378 1171 535 269 107 21 chr9 88708219 88708313 -29154314 - MER112 DNA MER1_type -6 254 169 2280 81 3 3 chr9 88708313 88708622 -29154005 + AluSc SINE Alu 1 309 0 535 269 107 21 chr9 88708622 88708761 -29153866 - MER112 DNA MER1_type -91 169 1 310 261 33 0 chr9 88708769 88708861 -29153766 + (CATA)n Simple_repeat Simple_repeat 1 95 0 1398 174 34 27 chr9 88708895 88709189 -29153438 - AluJo SINE Alu -16 296 1 1804 135 10 23 chr9 88710058 88710362 -29152265 + AluSx SINE Alu 6 305 -7 385 229 178 36 chr9 88711271 88711440 -29151187 - MIR SINE MIR -45 217 37 495 233 152 10 chr9 88711829 88711944 -29150683 + MER3 DNA MER1_type 6 102 -92 1712 185 0 7 chr9 88711944 88712246 -29150381 - AluJo SINE Alu -12 300 1 495 233 152 10 chr9 88712246 88712284 -29150343 + MER3 DNA MER1_type 102 133 -61 276 241 24 24 chr9 88712415 88712498 -29150129 + MER5B DNA MER1_type 96 178 0 1931 265 169 20 chr9 88712788 88713950 -29148677 - L2 LINE L2 0 3313 1968 836 220 13 0 chr9 88714005 88714164 -29148463 + FRAM SINE Alu 1 161 -15 391 325 56 19 chr9 88714702 88714862 -29147765 + MIR SINE MIR 95 260 -2 218 255 0 0 chr9 88715335 88715386 -29147241 + L2 LINE L2 2891 2941 -331 206 307 137 53 chr9 88717129 88717471 -29145156 + L2 LINE L2 2852 3222 -50 273 286 71 9 chr9 88717824 88717936 -29144691 - L2 LINE L2 -16 3256 3138 367 179 135 32 chr9 88718439 88718595 -29144032 - L1MC4 LINE L1 -242 7800 7629 768 165 0 30 chr9 88718604 88718737 -29143890 - FLAM_A SINE Alu -4 129 1 240 165 59 47 chr9 88720719 88720804 -29141823 - L1ME3A LINE L1 -130 6040 5955 218 292 14 14 chr9 88721634 88721706 -29140921 + L3 LINE CR1 1219 1290 -287 352 290 122 15 chr9 88721743 88721874 -29140753 + MIR SINE MIR 36 180 -82 642 299 75 17 chr9 88721922 88722163 -29140464 + L3 LINE CR1 1286 1540 -37 182 300 200 25 chr9 88722921 88723041 -29139586 + MIR3 SINE MIR 67 207 -1 314 236 94 57 chr9 88723585 88723691 -29138936 + MIR SINE MIR 37 146 -116 216 91 45 23 chr9 88725878 88725922 -29136705 + T-rich Low_complexity Low_complexity 2 46 0 4486 139 53 46 chr9 88725948 88726520 -29136107 - L1MB4 LINE L1 0 6180 5598 1466 156 39 14 chr9 88726520 88726802 -29135825 - AluJb SINE Alu -23 289 1 4486 139 53 46 chr9 88726802 88727121 -29135506 - L1MB4 LINE L1 -582 5598 5283 1584 149 37 0 chr9 88727128 88727396 -29135231 - AluJb SINE Alu -34 278 1 1142 188 24 8 chr9 88727398 88727653 -29134974 - L1MB4 LINE L1 -924 5222 4964 217 274 12 24 chr9 88727729 88727813 -29134814 + L2 LINE L2 3169 3251 -21 410 75 15 0 chr9 88727822 88727889 -29134738 + (TGGA)n Simple_repeat Simple_repeat 2 69 0 184 229 0 0 chr9 88728115 88728150 -29134477 - MIR3 SINE MIR -50 158 124 183 42 0 0 chr9 88728153 88728177 -29134450 + (CAGGG)n Simple_repeat Simple_repeat 2 25 0 718 258 325 17 chr9 88728341 88728686 -29133941 + L2 LINE L2 2863 3313 0 293 295 16 8 chr9 88729106 88729228 -29133399 + L1ME LINE L1 5617 5739 -382 341 289 61 0 chr9 88729720 88729834 -29132793 + MIR SINE MIR 61 181 -81 203 324 46 42 chr9 88730348 88730564 -29132063 - L2 LINE L2 -56 3216 3000 517 187 23 0 chr9 88730815 88730917 -29131710 + MER5A DNA MER1_type 2 106 -83 1622 156 80 0 chr9 88731881 88732156 -29130471 + AluSx SINE Alu 1 297 -15 2401 52 3 7 chr9 88732159 88732469 -29130158 + AluY SINE Alu 1 309 -2 253 215 54 54 chr9 88733037 88733130 -29129497 + MER5A DNA MER1_type 9 101 -88 2731 83 16 11 chr9 88733630 88734003 -29128624 + THE1C LTR MaLR 1 375 0 628 194 24 107 chr9 88734331 88734537 -29128090 + MER5A DNA MER1_type 1 189 0 578 286 43 0 chr9 88734786 88734947 -29127680 + MIR3 SINE MIR 30 197 -11 1954 98 16 23 chr9 88735027 88735333 -29127294 - AluSq SINE Alu -9 304 1 183 320 49 54 chr9 88736165 88736368 -29126259 - L2 LINE L2 -377 2937 2736 543 220 17 8 chr9 88736424 88736542 -29126085 - MER94 DNA DNA -4 130 12 412 308 41 14 chr9 88736632 88736778 -29125849 - L3 LINE CR1 -48 1529 1380 2053 110 0 3 chr9 88736833 88737150 -29125477 + AluSx SINE Alu 1 316 0 403 192 0 0 chr9 88737244 88737317 -29125310 - L2 LINE L2 -6 3266 3194 1634 213 88 62 chr9 88737321 88737389 -29125238 + L1MC4 LINE L1 6243 6308 -51 2153 102 0 3 chr9 88737389 88737693 -29124934 + AluSx SINE Alu 1 303 -9 1634 213 88 62 chr9 88737693 88737850 -29124777 + L1MC4 LINE L1 6308 6060 -299 1943 113 10 17 chr9 88737850 88738150 -29124477 + AluSx SINE Alu 1 298 -14 1634 213 88 62 chr9 88738150 88738460 -29124167 + L1MC4 LINE L1 6059 6359 0 198 349 16 0 chr9 88738491 88738554 -29124073 - L2 LINE L2 -92 3180 3117 216 242 132 55 chr9 88739461 88739552 -29123075 - MIR SINE MIR -32 230 133 2447 169 22 13 chr9 88739553 88740009 -29122618 + MER65C LTR ERV1 2 461 0 808 151 7 34 chr9 88740055 88740201 -29122426 + FLAM_C SINE Alu 1 142 -1 391 211 11 53 chr9 88740210 88740305 -29122322 + MIR SINE MIR 55 145 -117 307 273 10 50 chr9 88740831 88740930 -29121697 + MIR SINE MIR 166 260 -2 1421 138 135 0 chr9 88741124 88741384 -29121243 + AluJo SINE Alu 1 295 -17 226 327 188 0 chr9 88741689 88741790 -29120837 + L2 LINE L2 3138 3257 -15 189 143 0 0 chr9 88742479 88742507 -29120120 + MIR SINE MIR 119 146 -116 469 262 173 11 chr9 88743343 88743567 -29119060 + MIR SINE MIR 3 260 -2 928 133 113 44 chr9 88743630 88743833 -29118794 + MER20 DNA MER1_type 3 219 0 625 258 42 32 chr9 88744215 88744432 -29118195 - MIR SINE MIR -24 238 20 351 298 105 22 chr9 88745782 88745963 -29116664 + L1ME3A LINE L1 5131 5326 -820 1021 274 28 22 chr9 88745969 88746286 -29116341 + L1ME3A LINE L1 5381 5699 -471 1393 136 26 0 chr9 88746286 88746514 -29116113 + L1PA15 LINE L1 5927 6160 -5 1692 242 61 0 chr9 88746600 88747029 -29115598 + L1ME3A LINE L1 5711 6165 -5 972 84 8 0 chr9 88747244 88747375 -29115252 + AluSq/x SINE Alu 1 132 -180 2023 120 13 0 chr9 88747377 88747678 -29114949 + AluSq SINE Alu 1 305 -8 656 287 108 46 chr9 88747831 88748155 -29114472 + L2 LINE L2 2928 3271 -1 727 211 0 0 chr9 88748314 88748447 -29114180 + FLAM_A SINE Alu 9 141 -1 445 208 208 27 chr9 88748492 88748641 -29113986 - MER5A DNA MER1_type 0 189 14 323 210 109 50 chr9 88749272 88749391 -29113236 + MER5B DNA MER1_type 21 146 -32 2333 43 0 0 chr9 88750302 88750615 -29112012 - AluY SINE Alu 0 313 1 223 258 76 0 chr9 88750707 88750773 -29111854 + MIR SINE MIR 178 248 -14 2074 102 3 3 chr9 88751287 88751580 -29111047 + AluSx SINE Alu 1 293 -19 1084 161 5 10 chr9 88752460 88752659 -29109968 + AluJo SINE Alu 100 297 -15 443 212 124 9 chr9 88752787 88752900 -29109727 - MER5A DNA MER1_type 0 189 64 509 172 88 140 chr9 88752910 88753011 -29109616 - L1MC4 LINE L1 -11 8031 7926 2159 95 7 3 chr9 88753011 88753307 -29109320 - AluSx SINE Alu -15 297 1 509 172 88 140 chr9 88753307 88753455 -29109172 - L1MC4 LINE L1 -116 7926 7795 457 263 114 35 chr9 88753769 88754058 -29108569 + L2 LINE L2 2827 3138 -175 759 243 126 67 chr9 88754061 88754465 -29108162 - L2 LINE L2 0 3313 2886 382 261 78 14 chr9 88754505 88754647 -29107980 + L2 LINE L2 3162 3312 -1 31 0 0 0 chr9 88754867 88754898 -29107729 + GC_rich Low_complexity Low_complexity 1 31 0 250 288 133 14 chr9 88755509 88755676 -29106951 + L1ME4a LINE L1 5723 5869 -252 1708 174 13 3 chr9 88755676 88755975 -29106652 + AluJo SINE Alu 1 302 -10 250 288 133 14 chr9 88755975 88756092 -29106535 + L1ME4a LINE L1 5869 6041 -80 325 316 200 7 chr9 88756212 88756367 -29106260 - MIR SINE MIR -49 213 29 291 171 23 125 chr9 88757519 88757541 -29105086 - MER116 DNA Mariner -1 79 56 1580 189 7 0 chr9 88757541 88757832 -29104795 + AluJb SINE Alu 1 293 -19 291 171 23 125 chr9 88757832 88757897 -29104730 - MER116 DNA Mariner -24 56 1 2064 105 0 26 chr9 88758450 88758754 -29103873 + AluSx SINE Alu 1 296 -16 1205 252 144 24 chr9 88758864 88759316 -29103311 - L2 LINE L2 -4 3309 2804 264 247 47 113 chr9 88760145 88760295 -29102332 + MER5A DNA MER1_type 1 140 -49 203 270 112 22 chr9 88760223 88760312 -29102315 - MER5A DNA MER1_type -50 139 43 * 1654 164 0 20 chr9 88760314 88760606 -29102021 - AluJo SINE Alu -26 286 1 2364 63 0 7 chr9 88760778 88761078 -29101549 - AluY SINE Alu -13 298 1 666 122 0 0 chr9 88761498 88761605 -29101022 + (TTCC)n Simple_repeat Simple_repeat 4 110 0 1732 189 0 0 chr9 88761618 88761930 -29100697 - AluJb SINE Alu 0 312 1 2336 85 0 0 chr9 88763180 88763487 -29099140 - AluY SINE Alu -4 307 1 822 118 0 0 chr9 88763947 88764057 -29098570 + FLAM_C SINE Alu 9 118 -25 511 263 104 93 chr9 88765210 88765304 -29097323 + L1ME4a LINE L1 5644 5736 -385 2306 87 3 0 chr9 88765304 88765604 -29097023 + AluSp SINE Alu 1 301 -12 288 0 0 0 chr9 88765604 88765636 -29096991 + (TA)n Simple_repeat Simple_repeat 2 33 0 511 263 104 93 chr9 88765636 88766012 -29096615 + L1ME4a LINE L1 5735 6120 -1 357 191 167 48 chr9 88766678 88766804 -29095823 + MLT1G1 LTR MaLR 405 590 -4 318 330 25 8 chr9 88766889 88767007 -29095620 + L2 LINE L2 3193 3312 -1 307 231 185 77 chr9 88767014 88767144 -29095483 - MER5A DNA MER1_type -34 155 12 378 339 6 24 chr9 88767195 88767360 -29095267 - MER5A DNA MER1_type -7 182 21 198 354 61 0 chr9 88767549 88767631 -29094996 + MIR SINE MIR 119 205 -57 1583 167 3 41 chr9 88768052 88768346 -29094281 - AluJb SINE Alu -28 284 2 315 328 74 0 chr9 88768528 88768650 -29093977 + L2 LINE L2 3142 3272 0 204 318 162 44 chr9 88768963 88769394 -29093233 + L2 LINE L2 2306 2787 -527 382 184 175 26 chr9 88769484 88769598 -29093029 - L2 LINE L2 -1 3312 3182 652 201 34 7 chr9 88769695 88769844 -29092783 + MLT1H LTR MaLR 21 173 -376 285 138 17 17 chr9 88769970 88770028 -29092599 + MLT1G1 LTR MaLR 525 582 -13 1671 174 7 14 chr9 88770057 88770351 -29092276 - AluJb SINE Alu -19 293 2 2401 155 40 12 chr9 88770555 88770975 -29091652 - MSTB1 LTR MaLR 0 432 1 297 341 140 38 chr9 88771244 88771847 -29090780 - L2 LINE L2 -52 3220 2555 294 336 159 9 chr9 88772033 88772259 -29090368 - L2 LINE L2 -862 2452 2193 207 341 114 0 chr9 88772391 88772479 -29090148 + L2 LINE L2 3172 3269 -3 358 259 9 151 chr9 88772669 88772881 -29089746 - MER5A DNA MER1_type -1 188 7 1315 257 108 13 chr9 88772890 88773353 -29089274 + LTR33 LTR ERVL 2 508 -13 386 252 49 49 chr9 88773405 88773528 -29089099 - L2 LINE L2 -4 3268 3146 280 269 0 0 chr9 88773956 88774023 -29088604 + MIR SINE MIR 86 152 -110 307 324 186 16 chr9 88774095 88774342 -29088285 + L2 LINE L2 2983 3271 -1 321 210 16 0 chr9 88774376 88774438 -29088189 + Tigger5 DNA MER2_type 20 82 -2241 1408 141 36 0 chr9 88774440 88774660 -29087967 + Tigger5 DNA MER2_type 2094 2321 -2 409 289 0 41 chr9 88774679 88774800 -29087827 - MIR SINE MIR -110 152 37 327 272 105 57 chr9 88774896 88775052 -29087575 - MIR SINE MIR -11 251 79 2183 88 0 3 chr9 88775052 88775349 -29087278 + AluY SINE Alu 5 300 -11 327 272 105 57 chr9 88775349 88775420 -29087207 - MIR SINE MIR -183 79 13 210 105 0 53 chr9 88775562 88775600 -29087027 + (GAAA)n Simple_repeat Simple_repeat 4 39 0 1945 131 0 3 chr9 88776341 88776631 -29085996 - AluJb SINE Alu -23 289 1 404 298 26 98 chr9 88776667 88776972 -29085655 + L2 LINE L2 2947 3229 -43 441 191 7 121 chr9 88777057 88777198 -29085429 - MIR3 SINE MIR -28 180 56 328 234 104 0 chr9 88777277 88777354 -29085273 + MER5A DNA MER1_type 9 93 -96 24 32 0 0 chr9 88777689 88777720 -29084907 + AT_rich Low_complexity Low_complexity 1 31 0 371 287 53 27 chr9 88777750 88777938 -29084689 + L1ME LINE L1 5507 5702 -452 23 0 0 0 chr9 88778021 88778044 -29084583 + AT_rich Low_complexity Low_complexity 1 23 0 900 184 94 30 chr9 88778070 88778271 -29084356 + MIR SINE MIR 11 224 -38 2137 84 7 7 chr9 88778288 88778585 -29084042 - AluSc SINE Alu -12 297 1 1412 177 30 4 chr9 88779210 88779481 -29083146 + AluJo SINE Alu 14 291 -21 557 316 59 8 chr9 88779510 88779747 -29082880 - MIR SINE MIR -12 250 2 1933 128 0 26 chr9 88779969 88780274 -29082353 - AluSx SINE Alu -15 297 1 1603 155 19 48 chr9 88780276 88780586 -29082041 - AluJb SINE Alu -11 301 1 650 253 6 22 chr9 88780651 88780829 -29081798 + MER5B DNA MER1_type 1 175 -3 681 206 29 11 chr9 88780975 88781140 -29081487 + L1ME1 LINE L1 6005 6166 -4 3182 239 62 41 chr9 88781146 88781619 -29081008 + L1ME3 LINE L1 4178 4640 -1522 1614 188 0 7 chr9 88781619 88781922 -29080705 + AluJo SINE Alu 1 301 -11 3182 239 62 41 chr9 88781922 88782407 -29080220 + L1ME3 LINE L1 4640 5114 -1048 1748 159 0 17 chr9 88782407 88782732 -29079895 + AluSx SINE Alu 1 312 0 3182 239 62 41 chr9 88782732 88782744 -29079883 + L1ME3 LINE L1 5114 5124 -1038 1319 149 24 12 chr9 88782744 88782993 -29079634 + L1MA4 LINE L1 6043 6294 -6 3182 239 62 41 chr9 88782993 88783940 -29078687 + L1ME3 LINE L1 5124 6141 -21 186 133 0 0 chr9 88783999 88784029 -29078598 + (TTCTCC)n Simple_repeat Simple_repeat 4 33 0 316 286 67 19 chr9 88784097 88784202 -29078425 - HAL1 LINE L1 -1574 933 824 1084 176 5 0 chr9 88784462 88784649 -29077978 + MER5A DNA MER1_type 2 189 0 842 178 35 0 chr9 88784869 88785038 -29077589 - L1MB3 LINE L1 0 6183 6009 189 0 0 0 chr9 88785137 88785158 -29077469 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 799 148 0 23 chr9 88785158 88785277 -29077350 - FLAM_C SINE Alu -193 119 2 4797 168 31 13 chr9 88785287 88786411 -29076216 - L1MB3 LINE L1 -1 6182 5040 507 222 58 70 chr9 88786715 88786886 -29075741 + MIR SINE MIR 48 216 -46 245 261 84 42 chr9 88786958 88787077 -29075550 + L2 LINE L2 3147 3270 -2 280 130 174 0 chr9 88787352 88787398 -29075229 - MER81 DNA DNA -36 78 25 1261 93 0 22 chr9 88788174 88788356 -29074271 - AluSq SINE Alu -2 311 134 2806 28 0 6 chr9 88788356 88788675 -29073952 - AluYb8 SINE Alu -1 317 1 2108 62 0 84 chr9 88789724 88790068 -29072559 + AluSx SINE Alu 1 318 0 257 276 16 87 chr9 88790580 88790707 -29071920 + L2 LINE L2 2701 2818 -496 1988 155 3 0 chr9 88790737 88791034 -29071593 - AluSx SINE Alu -12 300 3 3480 142 54 7 chr9 88791083 88791661 -29070966 - L1MB5 LINE L1 0 6174 5570 277 214 169 11 chr9 88791761 88791850 -29070777 + L2 LINE L2 3167 3269 -3 497 308 6 35 chr9 88794117 88794289 -29068338 - MIR SINE MIR -55 207 41 198 0 0 0 chr9 88794372 88794394 -29068233 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 780 83 0 0 chr9 88794458 88794567 -29068060 + (TTTC)n Simple_repeat Simple_repeat 4 112 0 2220 100 0 0 chr9 88794573 88794852 -29067775 - AluSg SINE Alu -31 279 1 273 29 0 0 chr9 88795039 88795073 -29067554 + (CAGAGA)n Simple_repeat Simple_repeat 3 36 0 214 197 66 0 chr9 88795667 88795728 -29066899 + CT-rich Low_complexity Low_complexity 2 66 0 2331 107 0 0 chr9 88795878 88796178 -29066449 - AluSx SINE Alu -12 300 1 568 169 15 15 chr9 88796178 88796308 -29066319 + CT-rich Low_complexity Low_complexity 1 130 0 626 260 14 14 chr9 88796557 88796703 -29065924 - MIR3 SINE MIR -49 159 14 2039 132 41 0 chr9 88796958 88797253 -29065374 - AluSx SINE Alu -5 307 1 1164 136 66 5 chr9 88797259 88797457 -29065170 - L1PA16 LINE L1 -16 6150 5941 2424 185 7 17 chr9 88797763 88797941 -29064686 - MER47B DNA MER2_type -1905 418 240 2752 139 31 5 chr9 88797941 88798358 -29064269 + MSTA LTR MaLR 1 428 0 2424 185 7 17 chr9 88798358 88798601 -29064026 - MER47B DNA MER2_type -2083 240 1 1076 212 9 78 chr9 88798635 88798810 -29063817 - L1ME LINE L1 -3359 2721 2578 2210 117 7 0 chr9 88798810 88799109 -29063518 + AluSx SINE Alu 1 301 -11 1076 212 9 78 chr9 88799109 88799268 -29063359 - L1ME LINE L1 -3502 2578 2410 576 199 5 81 chr9 88799394 88799580 -29063047 - L1ME LINE L1 -3653 2427 2256 747 151 0 0 chr9 88799581 88799687 -29062940 - AluJb SINE Alu -12 300 195 1108 151 0 0 chr9 88799774 88799933 -29062694 - AluJo SINE Alu -153 159 1 3736 233 48 68 chr9 88799933 88800022 -29062605 - L1ME LINE L1 -3821 2259 2170 777 200 0 0 chr9 88800022 88800147 -29062480 + FLAM_A SINE Alu 2 126 -7 3736 233 48 68 chr9 88800147 88800213 -29062414 - L1ME LINE L1 -3910 2170 2104 2161 108 20 3 chr9 88800213 88800508 -29062119 - AluSx SINE Alu -8 304 5 3736 233 48 68 chr9 88800508 88801219 -29061408 - L1ME LINE L1 -3976 2104 1380 1861 161 7 7 chr9 88801219 88801518 -29061109 + AluJo SINE Alu 1 299 -13 3736 233 48 68 chr9 88801518 88801705 -29060922 - L1ME LINE L1 -4700 1380 1191 3153 186 31 46 chr9 88801705 88801943 -29060684 - MER6A DNA MER2_type -260 605 365 1820 145 13 51 chr9 88801943 88802254 -29060373 + AluJo SINE Alu 1 299 -13 3153 186 31 46 chr9 88802254 88802629 -29059998 - MER6A DNA MER2_type -500 365 1 3736 233 48 68 chr9 88802629 88802837 -29059790 - L1ME LINE L1 -4889 1191 980 1759 157 10 16 chr9 88802837 88803143 -29059484 - AluJo SINE Alu -8 304 1 3736 233 48 68 chr9 88803143 88803756 -29058871 - L1ME LINE L1 -5100 980 435 325 263 79 35 chr9 88803844 88803958 -29058669 - L1ME LINE L1 -5593 477 359 613 288 69 38 chr9 88804584 88804841 -29057786 + MIR SINE MIR 2 261 -1 478 247 71 45 chr9 88805158 88805312 -29057315 + MER5A DNA MER1_type 31 188 -1 267 345 0 0 chr9 88805317 88805404 -29057223 + GA-rich Low_complexity Low_complexity 3 89 0 240 283 30 30 chr9 88805722 88805821 -29056806 - L2 LINE L2 -196 3076 2978 373 240 57 57 chr9 88806109 88806284 -29056343 - L1ME4a LINE L1 0 6121 5947 2020 137 10 0 chr9 88806313 88806605 -29056022 - AluSx SINE Alu -17 295 1 445 255 43 82 chr9 88807955 88808139 -29054488 - MIR SINE MIR -66 196 20 185 221 55 158 chr9 88808215 88808257 -29054370 + L2 LINE L2 2654 2699 -615 2259 114 0 0 chr9 88808257 88808564 -29054063 - AluSg SINE Alu -3 307 1 185 221 55 158 chr9 88808564 88808648 -29053979 + L2 LINE L2 2699 2767 -547 368 208 10 0 chr9 88809092 88809193 -29053434 + (TGGA)n Simple_repeat Simple_repeat 1 102 0 262 360 37 15 chr9 88809442 88809578 -29053049 - L3 LINE CR1 -183 1394 1256 245 282 59 12 chr9 88809590 88809675 -29052952 - MLT1K LTR MaLR 0 588 500 1960 142 0 30 chr9 88809826 88810129 -29052498 - AluSx SINE Alu -18 294 1 446 303 26 32 chr9 88810436 88810591 -29052036 - L3 LINE CR1 -414 1163 1010 251 228 51 76 chr9 88810569 88810648 -29051979 + L2 LINE L2 3236 3312 -1 * 795 266 92 82 chr9 88810960 88811449 -29051178 - MLT1J LTR MaLR -15 496 3 258 316 100 27 chr9 88811644 88811858 -29050769 + L2 LINE L2 2770 2997 -275 788 240 5 39 chr9 88813098 88813306 -29049321 + MER3 DNA MER1_type 5 205 -4 810 262 53 5 chr9 88815481 88815687 -29046940 + MIR SINE MIR 47 262 0 441 329 24 6 chr9 88816716 88816883 -29045744 - MIR SINE MIR -65 197 28 221 296 0 0 chr9 88816900 88816954 -29045673 + MIR3 SINE MIR 103 156 -52 743 59 0 10 chr9 88817721 88817823 -29044804 + (TTC)n Simple_repeat Simple_repeat 2 102 0 1864 209 47 47 chr9 88817860 88818438 -29044189 - L1ME1 LINE L1 -3 6443 5866 5234 235 59 25 chr9 88818441 88820144 -29042483 - L1ME1 LINE L1 -2210 4216 2456 1329 272 65 79 chr9 88820150 88820418 -29042209 - L1ME1 LINE L1 -4410 2197 1927 2147 114 0 0 chr9 88820418 88820719 -29041908 + AluSx SINE Alu 1 301 0 1329 272 65 79 chr9 88820719 88821240 -29041387 - L1ME1 LINE L1 -4680 1927 1226 40 21 0 0 chr9 88821962 88822009 -29040618 + AT_rich Low_complexity Low_complexity 1 47 0 206 352 23 65 chr9 88822521 88822755 -29039872 + L2 LINE L2 2864 3086 -186 235 234 31 16 chr9 88823145 88823209 -29039418 - MER5A DNA MER1_type -1 188 124 2094 282 147 30 chr9 88823255 88824050 -29038577 + L1PA15 LINE L1 2 889 -5898 * 18042 200 19 18 chr9 88824017 88827542 -29035085 + L1PA15 LINE L1 1243 4794 -2022 864 224 0 0 chr9 88827542 88827707 -29034920 + FRAM SINE Alu 1 165 -1 18042 200 19 18 chr9 88827707 88829733 -29032894 + L1PA15 LINE L1 4794 6816 0 239 286 0 0 chr9 88829745 88829801 -29032826 - MER5A DNA MER1_type -124 65 10 521 353 31 0 chr9 88830189 88830413 -29032214 - MIR SINE MIR -12 250 20 377 221 173 0 chr9 88830491 88830595 -29032032 - L1MB7 LINE L1 -19 6165 6044 998 192 13 26 chr9 88830595 88830776 -29031851 + MLT2B2 LTR ERVL 224 451 -64 222 37 0 0 chr9 88830776 88830803 -29031824 + (TCTA)n Simple_repeat Simple_repeat 2 28 0 998 192 13 26 chr9 88830803 88830868 -29031759 + MLT2B2 LTR ERVL 451 515 0 2940 173 59 2 chr9 88830870 88831396 -29031231 - L1MB7 LINE L1 -142 6042 5487 1959 147 7 0 chr9 88831409 88831702 -29030925 - AluJo SINE Alu -17 295 1 2094 132 0 3 chr9 88831769 88832064 -29030563 - AluSx SINE Alu -18 294 1 370 302 44 73 chr9 88832527 88833050 -29029577 + L1M4 LINE L1 2533 3040 -3106 652 267 123 5 chr9 88833451 88833646 -29028981 + MIR SINE MIR 2 219 -43 436 202 18 37 chr9 88833646 88833755 -29028872 - MER94 DNA DNA -23 111 5 2119 118 17 0 chr9 88833936 88834223 -29028404 + AluSq SINE Alu 1 292 -21 390 307 149 29 chr9 88834287 88834737 -29027890 - L2 LINE L2 -859 2455 1952 348 345 73 37 chr9 88834989 88835198 -29027429 - MIR SINE MIR -32 230 11 2478 69 0 0 chr9 88835960 88836264 -29026363 - AluY SINE Alu -5 306 3 2283 81 10 3 chr9 88836547 88836842 -29025785 - AluSq SINE Alu -16 297 1 3959 181 57 27 chr9 88836844 88836920 -29025707 + Charlie1a DNA MER1_type 1 73 -2688 2069 186 17 3 chr9 88836920 88837280 -29025347 - MLT1A1 LTR MaLR 0 365 1 3959 181 57 27 chr9 88837280 88837484 -29025143 + Charlie1a DNA MER1_type 73 269 -2492 2171 136 0 0 chr9 88837484 88837785 -29024842 + AluSx SINE Alu 2 302 -10 3959 181 57 27 chr9 88837785 88838324 -29024303 + Charlie1a DNA MER1_type 269 846 -609 2275 174 10 25 chr9 88838381 88838777 -29023850 + MLT1B LTR MaLR 1 390 0 1921 146 0 26 chr9 88839384 88839686 -29022941 - AluSx SINE Alu -18 294 1 624 278 38 19 chr9 88840056 88840268 -29022359 + MLT1J1 LTR MaLR 3 218 -228 313 100 0 163 chr9 88840355 88840435 -29022192 + MLT1J2 LTR MaLR 363 429 -21 1482 174 91 11 chr9 88840534 88840821 -29021806 + AluJo SINE Alu 1 310 -2 333 62 0 0 chr9 88840910 88840958 -29021669 + (TG)n Simple_repeat Simple_repeat 2 49 0 384 298 30 8 chr9 88841553 88841684 -29020943 - MIR3 SINE MIR -14 194 61 1208 249 27 24 chr9 88841707 88842044 -29020583 - LTR16A LTR ERVL 0 450 113 210 71 0 0 chr9 88842271 88842299 -29020328 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 1177 204 87 59 chr9 88842723 88843081 -29019546 + LTR37A LTR ERV1 6 373 -53 2559 160 44 18 chr9 88843333 88843788 -29018839 + MLT1C LTR MaLR 1 467 0 4089 130 39 18 chr9 88844804 88845355 -29017272 - L1 LINE L1 -1311 4835 4264 2155 116 3 23 chr9 88845355 88845665 -29016962 - AluSx SINE Alu -8 304 1 4089 130 39 18 chr9 88845665 88845835 -29016792 - L1 LINE L1 -1882 4264 4099 381 115 66 0 chr9 88847183 88847244 -29015383 - LTR50 LTR ERVL 0 795 731 365 253 0 0 chr9 88847749 88847836 -29014791 - L2 LINE L2 0 3313 3227 2190 174 47 8 chr9 88848828 88849230 -29013397 - MSTB1 LTR MaLR 0 432 15 2694 93 28 0 chr9 88849782 88850136 -29012491 + THE1B LTR MaLR 1 364 0 446 193 48 0 chr9 88850506 88850589 -29012038 - MER91B DNA MER1_type -27 163 77 258 310 0 35 chr9 88850597 88850684 -29011943 - MER91B DNA MER1_type -61 129 46 1992 96 0 11 chr9 88850789 88851049 -29011578 + AluSx SINE Alu 42 298 -14 828 338 122 18 chr9 88851150 88851771 -29010856 + L3 LINE CR1 552 1237 -340 1591 195 7 7 chr9 88852097 88852395 -29010232 + AluJo SINE Alu 1 298 -14 280 259 75 81 chr9 88852526 88852700 -29009927 + L3 LINE CR1 1391 1563 -14 725 273 35 51 chr9 88852795 88852843 -29009784 - L1MC5 LINE L1 -396 7565 7518 1014 176 0 0 chr9 88852843 88853008 -29009619 - L1MB5 LINE L1 -3 6171 6007 725 273 35 51 chr9 88853008 88853270 -29009357 - L1MC5 LINE L1 -443 7518 7260 2501 85 0 0 chr9 88853310 88853617 -29009010 - AluSg SINE Alu -3 307 1 2493 50 0 0 chr9 88853890 88854188 -29008439 + AluY SINE Alu 1 298 -13 2087 129 0 3 chr9 88854215 88854510 -29008117 + AluSx SINE Alu 1 294 -18 511 242 45 15 chr9 88854525 88854657 -29007970 - L1MC5 LINE L1 -855 7106 6971 506 319 54 25 chr9 88854856 88855097 -29007530 + MIR SINE MIR 14 261 -1 839 215 98 8 chr9 88855420 88855666 -29006961 + LTR33 LTR ERVL 17 284 -237 476 277 13 13 chr9 88855695 88855854 -29006773 + LTR33 LTR ERVL 348 506 -15 507 187 0 0 chr9 88856004 88856095 -29006532 - FRAM SINE Alu -10 166 76 429 122 0 0 chr9 88856494 88856568 -29006059 + (TG)n Simple_repeat Simple_repeat 1 74 0 1890 133 7 20 chr9 88857217 88857511 -29005116 - AluJb SINE Alu -22 290 1 258 132 0 0 chr9 88859267 88859305 -29003322 + tRNA-Phe-TTC tRNA tRNA 1 38 -38 561 181 23 96 chr9 88860415 88860592 -29002035 - MER106B DNA MER1_type 0 1059 896 509 231 0 34 chr9 88860613 88860641 -29001986 - MLT1C LTR MaLR -6 461 434 16327 117 22 24 chr9 88860641 88862201 -29000426 + Tigger1 DNA MER2_type 1 1559 -859 2292 83 0 0 chr9 88862201 88862519 -29000108 + AluSc SINE Alu 1 318 0 16327 117 22 24 chr9 88862519 88863378 -28999249 + Tigger1 DNA MER2_type 1559 2418 0 509 231 0 34 chr9 88863378 88863466 -28999161 - MLT1C LTR MaLR -33 434 349 888 82 0 0 chr9 88863471 88863593 -28999034 + (TTCC)n Simple_repeat Simple_repeat 4 125 0 246 263 101 0 chr9 88863623 88863722 -28998905 + L3 LINE CR1 1298 1406 -171 240 229 84 24 chr9 88863769 88863852 -28998775 - MIR SINE MIR -56 206 119 1026 252 100 68 chr9 88863879 88864260 -28998367 - MSTD LTR MaLR -3 393 1 2198 96 14 0 chr9 88864857 88865160 -28997467 - AluSp SINE Alu 0 307 1 541 308 103 12 chr9 88865424 88865718 -28996909 - MLT1I LTR MaLR 0 409 52 682 205 0 0 chr9 88865856 88865968 -28996659 + AluJo SINE Alu 95 206 -106 276 335 80 71 chr9 88866026 88866378 -28996249 - L2 LINE L2 -2 3270 2916 2395 105 46 35 chr9 88867644 88868014 -28994613 + THE1C LTR MaLR 1 374 -1 403 307 73 7 chr9 88868093 88868230 -28994397 + L2 LINE L2 3123 3268 -4 873 179 64 46 chr9 88868520 88868693 -28993934 - MER45A DNA AcHobo -1 177 2 180 266 223 11 chr9 88869175 88869269 -28993358 + L2 LINE L2 3199 3312 -1 4607 152 17 51 chr9 88869319 88870202 -28992425 + L1MA9 LINE L1 5422 6274 -38 686 310 105 45 chr9 88870232 88870930 -28991697 - L2 LINE L2 0 3313 2571 2317 234 44 20 chr9 88871053 88871601 -28991026 + MER77 LTR ERV1 41 601 -4 288 0 0 0 chr9 88872069 88872101 -28990526 + (TG)n Simple_repeat Simple_repeat 1 32 0 2049 199 174 31 chr9 88872554 88873071 -28989556 - MLT1E LTR MaLR 0 593 3 313 323 24 54 chr9 88874278 88874445 -28988182 - MER5A DNA MER1_type -2 187 26 222 150 0 0 chr9 88874975 88875015 -28987612 + (TATAA)n Simple_repeat Simple_repeat 4 43 0 34 42 0 0 chr9 88875231 88875279 -28987348 + AT_rich Low_complexity Low_complexity 1 48 0 2042 226 60 32 chr9 88876551 88877116 -28985511 - L1MC4 LINE L1 -140 7902 7322 2531 101 19 25 chr9 88877117 88877483 -28985144 - THE1B LTR MaLR 0 364 1 248 89 0 44 chr9 88877526 88877571 -28985056 + (TCCC)n Simple_repeat Simple_repeat 2 44 0 2338 200 108 18 chr9 88877575 88877980 -28984647 - L1MC4 LINE L1 -980 7062 6592 323 44 22 0 chr9 88877980 88878025 -28984602 + (TCTA)n Simple_repeat Simple_repeat 3 48 0 2338 200 108 18 chr9 88878025 88878174 -28984453 - L1MC4 LINE L1 -1450 6592 6458 343 275 31 108 chr9 88880249 88880471 -28982156 + MER102b DNA MER1_type 113 317 -24 212 286 16 0 chr9 88881073 88881136 -28981491 - L2 LINE L2 -2521 793 730 299 384 0 14 chr9 88881882 88882020 -28980607 + L2 LINE L2 2554 2689 -625 242 254 84 0 chr9 88882419 88882490 -28980137 - MER91C DNA MER1_type -30 110 34 285 109 0 0 chr9 88882634 88882680 -28979947 + (CA)n Simple_repeat Simple_repeat 2 47 0 180 77 0 0 chr9 88882680 88882706 -28979921 + (TC)n Simple_repeat Simple_repeat 1 26 0 219 177 0 0 chr9 88882860 88882922 -28979705 + (TA)n Simple_repeat Simple_repeat 2 63 0 236 321 131 0 chr9 88882923 88883007 -28979620 + L2 LINE L2 3139 3233 -39 231 88 0 0 chr9 88883344 88883378 -28979249 + (TG)n Simple_repeat Simple_repeat 2 35 0 388 231 68 43 chr9 88883586 88883703 -28978924 - L2 LINE L2 -5 3308 3189 7964 82 11 9 chr9 88883875 88884930 -28977697 + MER11C LTR ERVK 1 1057 -14 2171 100 4 0 chr9 88885010 88885291 -28977336 + AluSg SINE Alu 7 288 -22 305 203 27 18 chr9 88886214 88886304 -28976323 - AluJ/monomer SINE Alu -3 299 243 860 195 6 6 chr9 88886425 88886584 -28976043 - FRAM SINE Alu -16 160 2 4052 104 21 7 chr9 88887592 88888151 -28974476 + L1PB2 LINE L1 5577 6143 -8 328 301 58 6 chr9 88888244 88888412 -28974215 + MIR SINE MIR 28 201 -61 2721 143 24 26 chr9 88888838 88889264 -28973363 + MSTB LTR MaLR 1 425 -1 679 296 49 11 chr9 88889562 88889804 -28972823 - MIR SINE MIR -14 248 1 640 362 123 14 chr9 88889939 88890571 -28972056 - L2 LINE L2 -534 2780 2080 2274 204 23 8 chr9 88890621 88891140 -28971487 + L1ME1 LINE L1 5635 6161 -5 202 297 162 20 chr9 88891148 88891296 -28971331 - L2 LINE L2 -1298 2016 1848 1156 246 36 76 chr9 88891316 88891792 -28970835 + MLT1J LTR MaLR 3 459 -52 525 164 75 15 chr9 88892222 88892356 -28970271 - L1MB7 LINE L1 0 6184 6043 183 262 27 81 chr9 88892373 88892522 -28970105 + L2 LINE L2 3121 3261 -52 266 252 49 110 chr9 88894552 88894798 -28967829 + MIR SINE MIR 5 237 -25 794 192 100 80 chr9 88894819 88895069 -28967558 + MIR SINE MIR 7 261 -1 1700 162 48 0 chr9 88895309 88895581 -28967046 - AluJo SINE Alu -27 285 1 26 0 0 0 chr9 88895581 88895607 -28967020 + AT_rich Low_complexity Low_complexity 1 26 0 598 243 53 20 chr9 88895616 88895768 -28966859 + FRAM SINE Alu 5 161 -5 327 194 31 10 chr9 88895768 88895866 -28966761 + GA-rich Low_complexity Low_complexity 1 100 0 1882 191 51 5 chr9 88896512 88896921 -28965706 - MSTA LTR MaLR 0 428 1 3731 85 0 0 chr9 88897296 88897814 -28964813 - THE1B-int LTR MaLR -1062 518 1 2181 123 25 33 chr9 88897814 88898181 -28964446 - THE1B LTR MaLR 0 364 1 1929 177 3 3 chr9 88898302 88898646 -28963981 + L1PA16 LINE L1 5807 6150 -16 371 192 131 0 chr9 88898688 88898787 -28963840 + L1M4 LINE L1 3061 3172 -2974 424 317 16 8 chr9 88899394 88899517 -28963110 - L2 LINE L2 0 3272 3149 228 326 0 0 chr9 88899876 88899974 -28962653 - L1MB7 LINE L1 -1876 5932 5835 226 147 0 0 chr9 88899983 88900017 -28962610 + tRNA-Ala-GCG tRNA tRNA 6 39 -36 678 272 100 12 chr9 88900017 88900337 -28962290 - L1MC4a LINE L1 -1966 5842 5495 1999 140 65 14 chr9 88900676 88901032 -28961595 + THE1C LTR MaLR 1 374 -1 828 293 162 11 chr9 88901094 88901446 -28961181 - L2 LINE L2 0 3313 2909 467 273 95 90 chr9 88901447 88902034 -28960593 - HAL1b LINE L1 -612 736 147 1581 213 0 29 chr9 88903152 88903462 -28959165 - AluJo SINE Alu -11 301 1 1361 255 31 55 chr9 88903774 88904283 -28958344 + LTR33 LTR ERVL 25 521 0 2283 154 86 8 chr9 88904926 88905321 -28957306 + MSTB LTR MaLR 1 426 0 441 294 74 25 chr9 88905406 88905569 -28957058 - L2 LINE L2 0 3272 3102 191 129 29 43 chr9 88905964 88906034 -28956593 + A-rich Low_complexity Low_complexity 3 71 0 444 218 134 34 chr9 88906323 88906478 -28956149 - MER5A DNA MER1_type -13 176 4 305 100 20 0 chr9 88907471 88907521 -28955106 + (TG)n Simple_repeat Simple_repeat 2 52 0 2291 55 3 35 chr9 88907744 88908055 -28954572 + AluY SINE Alu 1 301 -10 2776 143 48 2 chr9 88908172 88908677 -28953950 - L1MB4 LINE L1 -8 6172 5645 272 275 66 33 chr9 88908681 88908772 -28953855 - L2 LINE L2 -10 3303 3210 540 175 63 35 chr9 88909127 88909270 -28953357 - MER69 DNA AcHobo -2379 147 1 577 272 45 25 chr9 88909274 88909517 -28953110 - L2 LINE L2 -524 2790 2543 243 0 0 0 chr9 88910189 88910216 -28952411 + (TG)n Simple_repeat Simple_repeat 2 28 0 189 230 0 0 chr9 88910245 88910319 -28952308 + GA-rich Low_complexity Low_complexity 1 74 0 1043 253 75 38 chr9 88910558 88910665 -28951962 - L2 LINE L2 -705 2609 2507 390 21 0 0 chr9 88910665 88910712 -28951915 + (TG)n Simple_repeat Simple_repeat 2 48 0 1043 253 75 38 chr9 88910712 88911055 -28951572 - L2 LINE L2 -807 2507 2142 1060 150 50 55 chr9 88911285 88911505 -28951122 - THE1B LTR MaLR -2 362 144 374 286 53 18 chr9 88911505 88911676 -28950951 + L1M4 LINE L1 4284 4460 -1686 1340 188 9 100 chr9 88911939 88912370 -28950257 - L1MB8 LINE L1 0 6178 5787 12274 172 12 13 chr9 88912543 88915001 -28947626 - L1P LINE L1 -1482 4664 2210 348 200 10 10 chr9 88914996 88915096 -28947531 - L1MEc LINE L1 -5235 1161 1062 * 2848 7 0 0 chr9 88915251 88915558 -28947069 - AluYa5 SINE Alu -4 307 1 380 242 0 0 chr9 88916478 88916577 -28946050 - L1M4 LINE L1 -2097 4049 3951 1781 235 95 10 chr9 88916667 88917436 -28945191 - L1M4 LINE L1 -2391 3755 2922 6505 83 36 8 chr9 88917452 88918831 -28943796 - L1PA13 LINE L1 -19 6144 4748 2134 162 3 3 chr9 88919428 88919793 -28942834 + MER47A DNA MER2_type 2 366 0 628 305 91 89 chr9 88920959 88921770 -28940857 - L2 LINE L2 -888 2426 1614 2325 99 0 0 chr9 88921970 88922272 -28940355 + AluSx SINE Alu 1 302 -10 316 158 171 12 chr9 88924494 88924576 -28938051 + MIR SINE MIR 71 165 -97 1534 223 89 17 chr9 88925066 88925536 -28937091 - Charlie4a DNA MER1_type -1 507 4 211 354 0 0 chr9 88925737 88925802 -28936825 + L2 LINE L2 3110 3174 -98 452 313 47 0 chr9 88926859 88927009 -28935618 - MIR3 SINE MIR -6 202 46 433 236 19 28 chr9 88927226 88927332 -28935295 + MLT1C LTR MaLR 1 105 -400 * 2518 112 27 0 chr9 88927331 88927706 -28934921 + MSTA LTR MaLR 44 428 0 1144 205 86 30 chr9 88927710 88928047 -28934580 + MLT1C LTR MaLR 110 465 -2 280 302 36 18 chr9 88928079 88928235 -28934392 + MIR SINE MIR 7 153 -62 184 227 0 0 chr9 88928315 88928359 -28934268 - MIR SINE MIR -109 153 110 344 290 10 10 chr9 88928694 88928794 -28933833 + MER5B DNA MER1_type 1 100 -78 225 128 21 0 chr9 88928962 88929009 -28933618 - MER5C DNA MER1_type -50 274 227 192 167 218 0 chr9 88929054 88929132 -28933495 - MER5C DNA MER1_type -95 229 135 2250 231 10 23 chr9 88929132 88929733 -28932894 + L1ME1 LINE L1 5569 6161 -5 14100 119 29 40 chr9 88929772 88931020 -28931607 - Tigger1 DNA MER2_type 0 2418 1158 230 54 0 27 chr9 88931020 88931057 -28931570 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 14100 119 29 40 chr9 88931057 88931085 -28931542 - Tigger1 DNA MER2_type -1260 1158 1131 3770 36 0 0 chr9 88931085 88931535 -28931092 - L1PA4 LINE L1 -1 6154 5705 14100 119 29 40 chr9 88931535 88932702 -28929925 - Tigger1 DNA MER2_type -1287 1131 1 347 344 0 0 chr9 88932705 88932795 -28929832 - MER5C DNA MER1_type -234 90 1 188 258 65 0 chr9 88933529 88933591 -28929036 + MIR SINE MIR 86 151 -111 2358 91 10 0 chr9 88933598 88933907 -28928720 - AluSx SINE Alu 0 312 1 327 49 0 0 chr9 88935582 88935623 -28927004 + (CA)n Simple_repeat Simple_repeat 2 42 0 697 275 82 18 chr9 88935938 88936223 -28926404 - L1MC/D LINE L1 -599 5557 5288 3205 127 26 0 chr9 88936300 88936836 -28925791 - L1MA4 LINE L1 -5 6295 5746 2382 109 23 2 chr9 88936837 88937232 -28925395 + L1MA4 LINE L1 5322 5724 -576 322 309 107 33 chr9 88937322 88938043 -28924584 - L1MC/D LINE L1 -1038 5108 4335 328 176 11 182 chr9 88938344 88938520 -28924107 - L2 LINE L2 -56 3257 3112 2311 255 60 50 chr9 88938537 88939711 -28922916 + L1M4 LINE L1 2653 3837 -2309 897 204 51 6 chr9 88939827 88939984 -28922643 - AluJo SINE Alu -148 164 1 38729 85 16 11 chr9 88940058 88946168 -28916459 - L1PA8 LINE L1 -11 6161 11 303 187 13 27 chr9 88946745 88946820 -28915807 - LTR67 LTR ERVL -23 534 461 2033 126 0 11 chr9 88947355 88947641 -28914986 + AluSx SINE Alu 1 283 -29 828 232 45 0 chr9 88947960 88948158 -28914469 + LTR16A1 LTR ERVL 251 457 0 459 274 92 48 chr9 88948158 88948369 -28914258 + L1MC4a LINE L1 5746 5967 -154 2259 118 0 3 chr9 88949311 88949617 -28913010 - AluSq SINE Alu -8 305 1 297 164 18 0 chr9 88949798 88949853 -28912774 - L2 LINE L2 -1 3271 3216 902 278 81 40 chr9 88950156 88950670 -28911957 + L1ME4a LINE L1 5350 5902 -219 275 265 60 0 chr9 88950702 88950785 -28911842 + L1ME4a LINE L1 5989 6076 -45 2282 102 0 7 chr9 88950809 88951112 -28911515 - AluSc SINE Alu -8 301 1 2990 88 0 0 chr9 88951188 88951552 -28911075 + THE1B LTR MaLR 1 364 0 6964 28 5 1 chr9 88952206 88953661 -28908966 + L1PA4 LINE L1 4565 6021 -134 196 278 0 0 chr9 88953933 88953987 -28908640 - L2 LINE L2 -2 3311 3258 792 191 20 98 chr9 88956231 88956435 -28906192 + MIR SINE MIR 6 193 -69 3572 186 34 10 chr9 88956899 88957610 -28905017 + L1MB7 LINE L1 5450 6177 -7 265 232 43 0 chr9 88957742 88957811 -28904816 + LTR67 LTR ERVL 2 73 -484 443 273 126 75 chr9 88957959 88958293 -28904334 + LTR67 LTR ERVL 207 557 0 221 208 62 0 chr9 88958430 88958478 -28904149 - MIR SINE MIR -61 147 97 1864 191 68 21 chr9 88960471 88960896 -28901731 + MLT1C LTR MaLR 23 467 0 248 350 39 0 chr9 88961014 88961117 -28901510 - MER91A DNA MER1_type -89 107 1 273 75 0 0 chr9 88962700 88962740 -28899887 + (TG)n Simple_repeat Simple_repeat 1 40 0 480 288 100 41 chr9 88963412 88963683 -28898944 - L3 LINE CR1 -2 1575 1289 271 390 91 0 chr9 88963730 88963917 -28898710 + MIR SINE MIR 49 252 -10 217 324 40 0 chr9 88963924 88963998 -28898629 - L3 LINE CR1 -291 1286 1210 234 224 60 15 chr9 88964056 88964123 -28898504 - MER113 DNA MER1_type? 0 521 452 22 0 0 0 chr9 88964126 88964148 -28898479 + AT_rich Low_complexity Low_complexity 1 22 0 375 211 22 0 chr9 88964172 88964262 -28898365 - MER113 DNA MER1_type? -313 208 117 2245 147 113 2 chr9 88964364 88964772 -28897855 + L1MC2 LINE L1 5883 6335 -9 550 274 165 16 chr9 88965451 88965772 -28896855 + LTR16A LTR ERVL 82 450 0 304 329 112 14 chr9 88965844 88965987 -28896640 - MIR SINE MIR 0 262 106 240 60 0 60 chr9 88966535 88966585 -28896042 + (TTC)n Simple_repeat Simple_repeat 2 48 0 639 179 186 0 chr9 88967126 88967282 -28895345 - MER53 DNA DNA 0 189 5 262 262 0 0 chr9 88968619 88968680 -28893947 + GA-rich Low_complexity Low_complexity 1 61 0 1804 136 11 17 chr9 88968787 88969074 -28893553 - AluJb SINE Alu -3 309 25 694 197 27 14 chr9 88969275 88969437 -28893190 - L1MD3 LINE L1 0 7990 6205 296 320 61 44 chr9 88970027 88970208 -28892419 + MIR3 SINE MIR 22 205 -3 2183 132 0 0 chr9 88970702 88971006 -28891621 - AluSx SINE Alu -8 304 1 545 288 77 40 chr9 88971052 88971351 -28891276 - L2 LINE L2 -923 2391 2082 509 272 0 0 chr9 88971537 88971651 -28890976 - L2 LINE L2 0 3313 3200 335 276 53 32 chr9 88972712 88973135 -28889492 + L1ME2 LINE L1 5607 6027 -137 1709 203 0 0 chr9 88973207 88973512 -28889115 + AluJb SINE Alu 1 305 -7 344 282 58 0 chr9 88974509 88974612 -28888015 + L2 LINE L2 3197 3305 -8 648 262 45 65 chr9 88974848 88975291 -28887336 + L1ME4a LINE L1 4401 4834 -1312 771 251 121 0 chr9 88975311 88975534 -28887093 - MIR SINE MIR -2 260 11 466 265 99 27 chr9 88975678 88975901 -28886726 + L1ME4a LINE L1 5275 5513 -649 1152 182 25 21 chr9 88975905 88976141 -28886486 - MER96B DNA MER1_type? -180 237 1 554 295 84 8 chr9 88976145 88976382 -28886245 + L1ME4a LINE L1 5571 5825 -296 1684 259 30 36 chr9 88976824 88977330 -28885297 + LTR67 LTR ERVL 55 557 0 1103 170 16 0 chr9 88977483 88977677 -28884950 - MER3 DNA MER1_type -7 202 6 227 246 77 0 chr9 88977890 88977955 -28884672 + MLT1L LTR MaLR 34 103 -512 396 309 0 0 chr9 88978086 88978183 -28884444 + MIR3 SINE MIR 81 177 -31 21 0 0 0 chr9 88978189 88978210 -28884417 + AT_rich Low_complexity Low_complexity 1 21 0 292 253 51 41 chr9 88979020 88979160 -28883467 - MIR SINE MIR -1 261 70 410 266 79 52 chr9 88979164 88979393 -28883234 + MLT1K LTR MaLR 311 545 -43 252 347 0 0 chr9 88980265 88980337 -28882290 + MIR SINE MIR 78 149 -59 234 366 30 0 chr9 88980721 88980822 -28881805 + L2 LINE L2 3169 3272 0 23 54 0 0 chr9 88982466 88982503 -28880124 + AT_rich Low_complexity Low_complexity 1 37 0 605 318 75 39 chr9 88983394 88983895 -28878732 - L2 LINE L2 -64 3249 2729 852 188 71 10 chr9 88985176 88985373 -28877254 - MER3 DNA MER1_type 0 209 1 34 24 0 0 chr9 88987362 88987403 -28875224 + AT_rich Low_complexity Low_complexity 1 41 0 574 133 26 18 chr9 88987403 88987516 -28875111 - L1PB4 LINE L1 -2 6154 6041 246 309 50 43 chr9 88988853 88988992 -28873635 - MIR SINE MIR -12 250 111 794 213 50 0 chr9 88989123 88989344 -28873283 + L1M4 LINE L1 4158 4389 -1757 313 297 0 0 chr9 88989498 88989572 -28873055 - MIR SINE MIR -144 118 45 237 224 26 53 chr9 88989802 88989878 -28872749 - MIR SINE MIR -60 202 129 443 336 12 8 chr9 88990231 88990405 -28872222 - MIR3 SINE MIR -2 206 33 1335 256 78 32 chr9 88990913 88991422 -28871205 - L2 LINE L2 0 3313 2777 2288 90 0 0 chr9 88991422 88991710 -28870917 - AluSc SINE Alu -21 288 1 1335 256 78 32 chr9 88991710 88991723 -28870904 - L2 LINE L2 -536 2777 2766 2761 203 69 26 chr9 88991737 88991898 -28870729 - L1ME2 LINE L1 -1 6163 6003 947 279 73 51 chr9 88991898 88992449 -28870178 - L1MB1 LINE L1 -187 6002 5440 507 236 159 24 chr9 88992427 88992635 -28869992 - L1MB1 LINE L1 -1042 5104 4869 * 189 297 79 30 chr9 88992794 88992895 -28869732 + L2 LINE L2 3208 3313 0 459 0 0 0 chr9 88993010 88993061 -28869566 + (CA)n Simple_repeat Simple_repeat 1 51 0 215 326 0 20 chr9 88994550 88994648 -28867979 + L2 LINE L2 3173 3268 -4 251 300 131 8 chr9 88995185 88995315 -28867312 + MIR3 SINE MIR 60 205 -3 1187 142 0 0 chr9 88995962 88996131 -28866496 + AluSg/x SINE Alu 135 303 -9 252 0 0 0 chr9 88996246 88996274 -28866353 + (TG)n Simple_repeat Simple_repeat 2 29 0 27 49 0 0 chr9 88997290 88997331 -28865296 + AT_rich Low_complexity Low_complexity 1 41 0 265 215 15 0 chr9 88997438 88997503 -28865124 - MIR SINE MIR -37 225 160 231 235 0 49 chr9 88997641 88997722 -28864905 + MIR SINE MIR 109 185 -77 1057 253 117 61 chr9 88997738 88998287 -28864340 + Charlie7 DNA MER1_type 9 595 -2017 1730 150 56 39 chr9 88998287 88998422 -28864205 + AluJo SINE Alu 1 132 -180 2439 61 3 0 chr9 88998422 88998715 -28863912 + AluSp SINE Alu 10 303 -10 1730 150 56 39 chr9 88998715 88998885 -28863742 + AluJo SINE Alu 132 311 -1 1057 253 117 61 chr9 88998885 88998927 -28863700 + Charlie7 DNA MER1_type 595 633 -1979 394 229 21 73 chr9 88998959 88999151 -28863476 + Charlie7 DNA MER1_type 2430 2611 -1 476 274 52 0 chr9 88999657 88999810 -28862817 - MIR SINE MIR -5 257 97 1152 210 34 19 chr9 88999926 89000188 -28862439 + L1MD3 LINE L1 7730 7995 0 225 0 0 0 chr9 89000486 89000511 -28862116 + (TG)n Simple_repeat Simple_repeat 2 26 0 529 17 0 0 chr9 89000511 89000570 -28862057 - L1P LINE L1 -1205 4941 4883 724 203 0 15 chr9 89001170 89001303 -28861324 - FLAM_A SINE Alu -2 131 1 238 286 175 43 chr9 89001305 89001585 -28861042 - L2 LINE L2 -2 3311 2995 207 346 92 0 chr9 89002012 89002142 -28860485 + MIR SINE MIR 48 189 -73 1179 239 112 61 chr9 89002500 89002918 -28859709 + MLT1D LTR MaLR 1 447 -58 2350 79 0 0 chr9 89002918 89003210 -28859417 + AluY SINE Alu 5 296 -15 1179 239 112 61 chr9 89003210 89003263 -28859364 + MLT1D LTR MaLR 447 496 -9 385 190 74 8 chr9 89003673 89003794 -28858833 - MIR3 SINE MIR -53 155 27 323 179 89 0 chr9 89004053 89004109 -28858518 + MER58B DNA MER1_type 197 257 -84 1182 184 112 9 chr9 89004113 89004336 -28858291 + AluJo SINE Alu 1 246 -66 319 256 100 0 chr9 89004376 89004466 -28858161 + MER58B DNA MER1_type 243 341 0 241 320 13 0 chr9 89004504 89004579 -28858048 + GA-rich Low_complexity Low_complexity 3 78 0 2128 105 0 31 chr9 89004919 89005213 -28857414 + AluSq SINE Alu 1 285 -28 315 207 0 35 chr9 89005464 89005551 -28857076 + AluSp/q SINE Alu 220 303 0 403 240 97 80 chr9 89006629 89006672 -28855955 + MER5B DNA MER1_type 1 42 -136 2223 86 3 3 chr9 89006672 89006999 -28855628 + AluY SINE Alu 1 311 0 403 240 97 80 chr9 89006999 89007130 -28855497 + MER5B DNA MER1_type 42 178 0 192 200 0 0 chr9 89007800 89007840 -28854787 + MIR SINE MIR 4 43 -219 22 0 0 0 chr9 89007848 89007870 -28854757 + AT_rich Low_complexity Low_complexity 1 22 0 3978 138 45 9 chr9 89007875 89008825 -28853802 - L1PA16 LINE L1 0 6154 5133 683 237 27 5 chr9 89008835 89009021 -28853606 + MIR SINE MIR 53 242 -20 355 269 158 47 chr9 89009166 89009445 -28853182 - L1ME4a LINE L1 -188 5933 5624 191 318 62 45 chr9 89009585 89009764 -28852863 - L2 LINE L2 -609 2705 2524 186 288 0 30 chr9 89009928 89009994 -28852633 - MIR SINE MIR -184 78 15 546 223 40 20 chr9 89010682 89010830 -28851797 - L1ME4a LINE L1 -3 6118 5968 191 324 15 0 chr9 89011145 89011213 -28851414 - MIR3 SINE MIR -2 206 138 726 160 24 0 chr9 89011223 89011348 -28851279 - L1MB1 LINE L1 -1 6167 6040 1145 293 69 12 chr9 89011358 89011375 -28851252 + L2 LINE L2 2378 2393 -920 1772 183 51 9 chr9 89011375 89011725 -28850902 - MLT1A1 LTR MaLR 0 365 1 1145 293 69 12 chr9 89011725 89012298 -28850329 + L2 LINE L2 2393 3000 -313 679 185 0 23 chr9 89012378 89012508 -28850119 + FRAM SINE Alu 49 175 -1 180 0 0 0 chr9 89012596 89012616 -28850011 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 660 298 96 46 chr9 89012731 89013162 -28849465 - L1ME4a LINE L1 -307 5814 5348 2549 141 21 7 chr9 89013680 89014113 -28848514 - L1MA4A LINE L1 -28 6275 5837 386 308 50 0 chr9 89014332 89014452 -28848175 + MER91C DNA MER1_type 1 126 -14 203 308 120 8 chr9 89014538 89014655 -28847972 - MIR3 SINE MIR -35 173 44 239 219 0 27 chr9 89014658 89014731 -28847896 + (TTTA)n Simple_repeat Simple_repeat 2 72 0 1082 268 103 11 chr9 89015041 89015418 -28847209 - L1MC4a LINE L1 -1844 5964 5553 207 0 0 0 chr9 89015507 89015530 -28847097 + (TG)n Simple_repeat Simple_repeat 2 24 0 294 161 0 0 chr9 89015827 89015883 -28846744 - L1MA5 LINE L1 -1 6299 6244 405 201 32 52 chr9 89015883 89016037 -28846590 - L1MC4a LINE L1 -2373 5435 5285 242 311 20 7 chr9 89016057 89016208 -28846419 - L1MA5 LINE L1 -2392 5416 5264 243 61 0 0 chr9 89016559 89016592 -28846035 + (CAA)n Simple_repeat Simple_repeat 2 34 0 1250 245 11 0 chr9 89016872 89017145 -28845482 - L1ME1 LINE L1 -6 6160 5885 281 294 82 0 chr9 89017411 89017496 -28845131 - MIR SINE MIR -78 184 93 272 293 35 35 chr9 89017620 89017736 -28844891 + L2 LINE L2 3152 3267 -5 593 284 25 25 chr9 89019549 89019753 -28842874 + MIR SINE MIR 10 213 -49 1039 234 90 96 chr9 89019780 89020281 -28842346 - MLT1D LTR MaLR 0 505 8 323 327 101 21 chr9 89020311 89020748 -28841879 + L2 LINE L2 2584 3069 -203 534 138 9 17 chr9 89020923 89021039 -28841588 + (TGGA)n Simple_repeat Simple_repeat 3 117 0 309 237 27 97 chr9 89021335 89021450 -28841177 - MER5A DNA MER1_type -2 182 74 357 223 268 6 chr9 89021479 89021636 -28840991 + MIR SINE MIR 55 252 -10 609 69 0 0 chr9 89021656 89021743 -28840884 + (CAT)n Simple_repeat Simple_repeat 3 89 0 301 278 179 33 chr9 89021752 89021903 -28840724 - MER5B DNA MER1_type -2 176 4 435 173 207 13 chr9 89021913 89022063 -28840564 - MER5A DNA MER1_type -2 187 9 525 231 58 13 chr9 89023006 89023162 -28839465 - MIR SINE MIR -89 173 11 516 296 30 16 chr9 89023189 89023421 -28839206 - MIR SINE MIR -5 257 14 422 233 12 0 chr9 89023574 89023660 -28838967 - MLT1D LTR MaLR -415 90 4 245 242 162 10 chr9 89023681 89023780 -28838847 + L2 LINE L2 2599 2712 -602 710 174 6 18 chr9 89024133 89024463 -28838164 + GA-rich Low_complexity Low_complexity 1 326 0 1195 115 0 0 chr9 89024597 89024779 -28837848 - L1MA4A LINE L1 -5 6298 6117 608 198 87 6 chr9 89024873 89025045 -28837582 + MIR SINE MIR 66 251 -11 817 169 0 0 chr9 89025063 89025181 -28837446 + FLAM_C SINE Alu 1 118 -25 23 0 0 0 chr9 89025181 89025204 -28837423 + AT_rich Low_complexity Low_complexity 1 23 0 466 290 124 13 chr9 89027006 89027212 -28835415 - MIR SINE MIR -13 249 20 2436 82 0 0 chr9 89029004 89029298 -28833329 + AluY SINE Alu 1 294 -17 1804 163 10 17 chr9 89029310 89029604 -28833023 - AluJo SINE Alu -20 292 1 409 237 52 0 chr9 89029806 89029903 -28832724 - MIR SINE MIR -114 148 47 26 50 0 0 chr9 89032314 89032354 -28830273 + AT_rich Low_complexity Low_complexity 1 40 0 404 240 0 10 chr9 89032507 89032607 -28830020 - LTR67 LTR ERVL 0 557 459 243 281 103 43 chr9 89033850 89034035 -28828592 + L2 LINE L2 1920 2115 -1199 513 183 0 19 chr9 89034208 89034312 -28828315 - L1MB4 LINE L1 -3 6177 6076 342 185 176 9 chr9 89034415 89034523 -28828104 + MIR SINE MIR 9 134 -128 2491 76 0 3 chr9 89034936 89035237 -28827390 - AluSq SINE Alu -13 300 1 343 305 0 9 chr9 89035688 89035803 -28826824 - MIR SINE MIR -67 141 33 1974 163 21 3 chr9 89038117 89038455 -28824172 - MER2 DNA MER2_type 0 344 1 408 55 0 0 chr9 89038487 89038542 -28824085 + (TG)n Simple_repeat Simple_repeat 1 55 0 222 248 124 16 chr9 89038840 89038961 -28823666 + MIR SINE MIR 81 214 -48 1625 143 72 0 chr9 89039076 89039341 -28823286 - AluJb SINE Alu -17 295 12 380 233 160 33 chr9 89040319 89040469 -28822158 - MIR SINE MIR -41 221 53 212 250 29 15 chr9 89041143 89041211 -28821416 - MIR SINE MIR -110 98 30 2346 96 72 17 chr9 89041212 89041557 -28821070 - THE1B LTR MaLR 0 364 1 957 179 43 16 chr9 89043081 89043265 -28819362 - MER5A DNA MER1_type 0 189 1 997 113 14 7 chr9 89043454 89043596 -28819031 + FRAM SINE Alu 1 143 -33 471 281 141 5 chr9 89046369 89046568 -28816059 - Charlie8 DNA MER1_type -2156 261 36 707 184 0 0 chr9 89046977 89047091 -28815536 - FLAM_A SINE Alu -19 114 1 339 276 24 16 chr9 89047091 89047207 -28815420 - L1ME1 LINE L1 -25 6141 6022 497 152 0 11 chr9 89047504 89047596 -28815031 + MER53 DNA DNA 99 189 0 271 81 27 0 chr9 89047699 89047736 -28814891 - U2 snRNA snRNA -150 38 1 763 137 51 0 chr9 89047856 89047973 -28814654 - FLAM_C SINE Alu -19 124 2 495 0 0 0 chr9 89048336 89048391 -28814236 + (TTTTA)n Simple_repeat Simple_repeat 2 56 0 1907 101 105 0 chr9 89048395 89048653 -28813974 - AluSx SINE Alu -27 285 1 21 36 0 0 chr9 89049573 89049601 -28813026 + AT_rich Low_complexity Low_complexity 1 28 0 316 349 65 41 chr9 89049615 89049953 -28812674 + L1ME4a LINE L1 4674 5019 -1127 332 265 185 33 chr9 89051146 89051357 -28811270 + MIR SINE MIR 20 262 0 885 204 51 6 chr9 89051754 89051911 -28810716 - AluJo SINE Alu -148 164 1 24216 43 8 4 chr9 89051970 89055735 -28806892 - L1PA6 LINE L1 0 6154 2378 267 262 50 91 chr9 89056279 89056500 -28806127 - L1ME4a LINE L1 -29 6092 5881 2152 120 7 3 chr9 89056513 89056814 -28805813 - AluSc SINE Alu -5 304 3 1947 153 4 0 chr9 89056840 89057121 -28805506 - AluJb SINE Alu -30 282 1 289 280 40 20 chr9 89057169 89057269 -28805358 - L2 LINE L2 -2 3311 3210 439 312 52 43 chr9 89057863 89058190 -28804437 + L1ME4a LINE L1 5562 5891 -230 451 258 80 44 chr9 89059413 89059638 -28802989 + MIR SINE MIR 30 262 0 782 201 87 7 chr9 89059901 89060094 -28802533 + MIR SINE MIR 58 262 0 478 293 6 12 chr9 89060155 89060322 -28802305 - MIR3 SINE MIR -6 202 37 1894 152 23 3 chr9 89060974 89061317 -28801310 + L1MA4A LINE L1 5950 6299 -4 42173 67 8 4 chr9 89064055 89069806 -28792821 - L1P2 LINE L1 -389 5765 1 459 272 5 43 chr9 89069819 89070003 -28792624 + CT-rich Low_complexity Low_complexity 4 180 0 2059 135 0 0 chr9 89070964 89071269 -28791358 - AluSx SINE Alu 0 305 1 541 226 32 89 chr9 89071366 89071556 -28791071 + MER20B DNA MER1_type 1 179 -604 2409 102 0 0 chr9 89071821 89072125 -28790502 - AluSg SINE Alu -6 304 1 214 209 0 23 chr9 89072354 89072397 -28790230 + MER5A DNA MER1_type 108 149 -40 539 271 27 50 chr9 89072731 89072952 -28789675 - MIR SINE MIR -2 260 45 369 0 0 0 chr9 89074016 89074057 -28788570 + (TG)n Simple_repeat Simple_repeat 2 42 0 261 307 131 26 chr9 89074302 89074455 -28788172 + MIR SINE MIR 20 188 -74 1018 234 14 14 chr9 89075453 89075671 -28786956 - MER20 DNA MER1_type -1 218 1 438 116 0 0 chr9 89075821 89075890 -28786737 + L1PA6 LINE L1 6084 6152 -2 415 321 12 12 chr9 89075917 89076079 -28786548 + MER117 DNA MER1_type 3 164 -33 392 244 146 0 chr9 89076188 89076311 -28786316 + MER91B DNA MER1_type 50 190 0 252 337 41 0 chr9 89076374 89076472 -28786155 + L2 LINE L2 3136 3237 -35 653 205 103 11 chr9 89076501 89076686 -28785941 - Charlie4a DNA MER1_type -3 505 304 998 209 99 28 chr9 89076732 89076925 -28785702 - Charlie4a DNA MER1_type -1583 378 157 2114 154 19 24 chr9 89076925 89077302 -28785325 - THE1C LTR MaLR 0 375 1 998 209 99 28 chr9 89077302 89077390 -28785237 - Charlie4a DNA MER1_type -1804 157 77 186 250 0 0 chr9 89077698 89077738 -28784889 + L2 LINE L2 3228 3267 -5 1750 161 41 89 chr9 89078322 89078714 -28783913 - MLT1B LTR MaLR 0 390 18 191 290 72 0 chr9 89079215 89079284 -28783343 - MIR SINE MIR -108 154 81 1719 172 10 7 chr9 89079904 89080194 -28782433 - AluJb SINE Alu -21 291 1 304 266 121 48 chr9 89080678 89080885 -28781742 - MIR SINE MIR -17 245 24 433 320 67 17 chr9 89080903 89081081 -28781546 - MER117 DNA MER1_type -6 191 5 343 239 55 18 chr9 89081729 89081838 -28780789 + HAL1 LINE L1 2267 2379 -128 291 28 0 0 chr9 89082109 89082145 -28780482 + (TG)n Simple_repeat Simple_repeat 1 36 0 739 204 138 0 chr9 89082657 89082809 -28779818 + MER45A DNA AcHobo 1 173 -5 502 255 142 31 chr9 89082975 89083264 -28779363 - MLT1J2 LTR MaLR -156 294 1 207 182 0 0 chr9 89083451 89083484 -28779143 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 246 220 34 76 chr9 89083504 89083622 -28779005 - MER104 DNA Tc2 -63 117 5 302 258 47 0 chr9 89085332 89085460 -28777167 - L1ME4a LINE L1 -187 5934 5801 379 360 52 5 chr9 89085954 89086165 -28776462 + L3 LINE CR1 1321 1541 -36 1752 283 55 36 chr9 89086737 89087729 -28774898 - L2 LINE L2 -4 3309 2291 1370 170 0 9 chr9 89087729 89087953 -28774674 - MLT1A1 LTR MaLR 0 365 144 2510 119 24 11 chr9 89088122 89088492 -28774135 + THE1C LTR MaLR 1 375 0 11083 96 17 31 chr9 89088492 89090093 -28772534 + THE1C-int LTR MaLR 1 1579 -1 2124 94 115 12 chr9 89090094 89090434 -28772193 + THE1C LTR MaLR 1 375 0 444 117 29 126 chr9 89090434 89090537 -28772090 - MLT1A1 LTR MaLR -281 93 1 2504 260 97 3 chr9 89090538 89091457 -28771170 - L2 LINE L2 -1020 2294 1290 1602 159 26 26 chr9 89091558 89091829 -28770798 - AluJo SINE Alu -39 273 3 231 281 49 0 chr9 89094399 89094481 -28768146 + L3 LINE CR1 1373 1458 -119 263 296 41 10 chr9 89094642 89094740 -28767887 - MIR SINE MIR -157 105 5 472 307 156 52 chr9 89095425 89096289 -28766338 + L2 LINE L2 2268 3237 -35 605 265 11 32 chr9 89096432 89096617 -28766010 + MER5A DNA MER1_type 3 183 -6 431 100 33 0 chr9 89096823 89096883 -28765744 + AluSq/x SINE Alu 62 123 -190 27 0 0 0 chr9 89096961 89096988 -28765639 + AT_rich Low_complexity Low_complexity 1 27 0 2388 101 0 3 chr9 89097293 89097601 -28765026 - AluSx SINE Alu -5 307 1 747 217 72 10 chr9 89098415 89098622 -28764005 - MIR SINE MIR 0 262 43 303 71 0 0 chr9 89099795 89099837 -28762790 + (TGGA)n Simple_repeat Simple_repeat 1 42 0 2150 89 0 34 chr9 89099856 89100147 -28762480 + AluY SINE Alu 24 304 -7 462 18 0 0 chr9 89102251 89102306 -28760321 + (CA)n Simple_repeat Simple_repeat 2 56 0 790 308 0 5 chr9 89102597 89102821 -28759806 + MIR SINE MIR 23 245 -17 2272 123 0 7 chr9 89104070 89104380 -28758247 + AluSx SINE Alu 1 308 -4 189 373 137 30 chr9 89104410 89104673 -28757954 - L2 LINE L2 -339 2975 2685 1237 195 19 0 chr9 89104696 89104911 -28757716 - MER58A DNA MER1_type -1 223 5 221 382 0 0 chr9 89105349 89105506 -28757121 + C-rich Low_complexity Low_complexity 1 157 0 223 319 125 25 chr9 89105572 89105732 -28756895 + MIR SINE MIR 13 188 -74 299 270 52 52 chr9 89106996 89107111 -28755516 - L2 LINE L2 -17 3255 3141 228 287 22 81 chr9 89108360 89108496 -28754131 + MIR SINE MIR 129 256 -6 2129 114 17 0 chr9 89108852 89109142 -28753485 - AluSg SINE Alu -15 295 1 222 278 0 0 chr9 89109152 89109206 -28753421 - MER5B DNA MER1_type -123 55 2 207 0 0 0 chr9 89110086 89110109 -28752518 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 7402 45 0 4 chr9 89110109 89111330 -28751297 - L1PA5 LINE L1 -11 6143 4926 14622 36 0 1 chr9 89112222 89114567 -28748060 + L1PA4 LINE L1 3645 5987 -168 21369 68 2 0 chr9 89114672 89117368 -28745259 + L1P LINE L1 249 2949 -3197 1565 280 14 24 chr9 89117474 89117971 -28744656 - L1MCb LINE L1 -5551 494 3 270 250 0 0 chr9 89118339 89118403 -28744224 + L1MC4a LINE L1 5830 5893 -1915 33 25 0 0 chr9 89118443 89118483 -28744144 + AT_rich Low_complexity Low_complexity 1 40 0 304 250 144 64 chr9 89118503 89118767 -28743860 + L1MC4a LINE L1 6074 6358 -1450 1447 130 0 5 chr9 89118787 89118994 -28743633 + AluSg/x SINE Alu 97 302 -10 217 175 0 35 chr9 89119252 89119278 -28743349 + CT-rich Low_complexity Low_complexity 2 27 -29 1181 190 153 43 chr9 89119278 89119604 -28743023 - MLT1A1 LTR MaLR -2 363 2 217 175 0 35 chr9 89119604 89119634 -28742993 + CT-rich Low_complexity Low_complexity 27 56 0 1348 228 41 70 chr9 89119643 89119725 -28742902 + L1MC5 LINE L1 6637 6720 -1241 432 0 0 0 chr9 89119725 89119773 -28742854 + (CA)n Simple_repeat Simple_repeat 1 48 0 1348 228 41 70 chr9 89119773 89120150 -28742477 + L1MC5 LINE L1 6720 7083 -878 4905 127 4 8 chr9 89120521 89121240 -28741387 + THE1C-int LTR MaLR 864 1579 -1 2081 100 115 12 chr9 89121241 89121581 -28741046 + THE1C LTR MaLR 1 375 0 444 117 29 126 chr9 89121581 89121684 -28740943 - MLT1A2 LTR MaLR -281 93 1 1636 268 87 13 chr9 89121685 89122387 -28740240 - L2 LINE L2 -1020 2294 1541 321 399 87 0 chr9 89122820 89123166 -28739461 - L2 LINE L2 -2495 819 444 807 219 12 0 chr9 89124289 89124449 -28738178 + FRAM SINE Alu 1 162 -14 216 0 0 0 chr9 89124607 89124631 -28737996 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1128 144 0 0 chr9 89126463 89126630 -28735997 - AluSq SINE Alu -10 303 137 269 136 23 0 chr9 89126743 89126787 -28735840 - MSTB-int LTR MaLR -1606 45 1 2613 154 19 7 chr9 89126787 89127208 -28735419 - MSTB LTR MaLR 0 426 1 2396 82 7 3 chr9 89127439 89127742 -28734885 + AluSq SINE Alu 1 304 -9 209 237 0 34 chr9 89128131 89128190 -28734437 + A-rich Low_complexity Low_complexity 3 59 0 2136 163 52 5 chr9 89128357 89128762 -28733865 + L1 LINE L1 4043 4466 -1680 279 274 0 0 chr9 89129118 89129191 -28733436 - Charlie8 DNA MER1_type -1 2416 2344 1514 144 0 0 chr9 89129227 89129442 -28733185 - AluSx SINE Alu -97 215 1 656 194 106 12 chr9 89129837 89130007 -28732620 + MER113 DNA MER1_type? 287 472 -49 274 321 62 9 chr9 89130063 89130175 -28732452 - MIR SINE MIR -116 146 29 225 196 22 0 chr9 89130673 89130719 -28731908 + CT-rich Low_complexity Low_complexity 2 48 0 403 221 64 76 chr9 89130826 89130998 -28731629 - MER5B DNA MER1_type -3 175 6 429 311 68 0 chr9 89131076 89131224 -28731403 + MIR SINE MIR 26 183 -79 292 275 66 0 chr9 89131545 89131636 -28730991 + MIR SINE MIR 49 145 -63 443 171 53 13 chr9 89131702 89131854 -28730773 + GA-rich Low_complexity Low_complexity 3 160 0 205 273 0 0 chr9 89132402 89132457 -28730170 + MIR SINE MIR 61 115 -147 2369 80 3 3 chr9 89132501 89132801 -28729826 + AluY SINE Alu 1 300 -11 690 204 0 23 chr9 89133636 89133768 -28728859 + FLAM_A SINE Alu 4 132 -1 564 216 48 0 chr9 89134152 89134277 -28728350 + MER91C DNA MER1_type 1 131 -9 197 150 26 22 chr9 89135311 89135361 -28727266 + MIR SINE MIR 107 154 -54 899 219 99 0 chr9 89135484 89135685 -28726942 + MER58A DNA MER1_type 2 222 -2 220 291 30 67 chr9 89135735 89135780 -28726847 - MIR SINE MIR -7 255 210 2048 99 0 4 chr9 89135780 89136043 -28726584 - AluSx SINE Alu -12 300 39 220 291 30 67 chr9 89136043 89136131 -28726496 - MIR SINE MIR -52 210 127 190 318 33 40 chr9 89136204 89136355 -28726272 - L2 LINE L2 -221 3051 2902 396 297 75 42 chr9 89136477 89136689 -28725938 + Charlie8 DNA MER1_type 38 245 -2172 1878 281 98 24 chr9 89136706 89137342 -28725285 + MER115 DNA AcHobo 11 693 0 204 289 26 0 chr9 89137513 89137589 -28725038 - L2 LINE L2 -657 2657 2580 355 293 9 9 chr9 89137658 89137764 -28724863 - MER81 DNA DNA 0 114 9 290 276 103 32 chr9 89138260 89138375 -28724252 + MIR SINE MIR 77 207 -55 3087 123 47 6 chr9 89138375 89138889 -28723738 + L1MB4 LINE L1 5646 6180 0 290 276 103 32 chr9 89138889 89138929 -28723698 + MIR SINE MIR 207 243 -19 619 290 14 37 chr9 89139542 89139759 -28722868 + MIR SINE MIR 30 241 -21 390 299 153 0 chr9 89139883 89140040 -28722587 - MER5A DNA MER1_type 0 189 9 883 267 82 28 chr9 89140087 89140544 -28722083 - MLT1G3 LTR MaLR 0 567 24 1492 137 0 9 chr9 89140549 89140761 -28721866 - AluSg/x SINE Alu -14 298 89 605 238 31 153 chr9 89141395 89141782 -28720845 - MER102b DNA MER1_type -1 340 1 1826 10 0 0 chr9 89141830 89142034 -28720593 - L1PA2 LINE L1 0 6155 5952 2318 113 3 0 chr9 89142637 89142946 -28719681 - AluSg SINE Alu 0 310 1 317 266 35 26 chr9 89143053 89143166 -28719461 + MIR SINE MIR 78 191 -71 358 169 28 0 chr9 89143331 89143402 -28719225 + MER116 DNA Mariner 3 75 -5 260 234 0 85 chr9 89144202 89144242 -28718385 - L2 LINE L2 -20 3293 3251 965 210 83 5 chr9 89144242 89144447 -28718180 + MER58A DNA MER1_type 1 221 -3 260 234 0 85 chr9 89144447 89144500 -28718127 - L2 LINE L2 -62 3251 3208 442 279 29 23 chr9 89144741 89144913 -28717714 + MER5A DNA MER1_type 17 189 0 1915 139 3 29 chr9 89146190 89146499 -28716128 - AluJb SINE Alu -11 301 1 2198 85 26 23 chr9 89149789 89150096 -28712531 - AluSp SINE Alu -5 308 1 195 42 0 0 chr9 89151411 89151435 -28711192 + (A)n Simple_repeat Simple_repeat 1 24 0 2306 104 0 7 chr9 89151441 89151749 -28710878 + AluSx SINE Alu 1 306 -6 467 208 42 8 chr9 89151825 89151945 -28710682 + MER5C DNA MER1_type 1 124 -200 819 127 0 70 chr9 89152160 89152302 -28710325 - FLAM_C SINE Alu -1 132 1 2704 86 24 14 chr9 89153090 89153299 -28709328 - THE1C LTR MaLR 0 375 159 2342 103 0 3 chr9 89153299 89153599 -28709028 + AluSq SINE Alu 12 310 -3 2704 86 24 14 chr9 89153599 89153760 -28708867 - THE1C LTR MaLR -216 159 1 2064 142 0 0 chr9 89153915 89154204 -28708423 + AluJo SINE Alu 1 289 -23 22 0 0 0 chr9 89154204 89154226 -28708401 + AT_rich Low_complexity Low_complexity 1 22 0 543 279 58 0 chr9 89154532 89154686 -28707941 + MIR SINE MIR 65 227 -35 2300 98 0 0 chr9 89154686 89154981 -28707646 + AluSg1 SINE Alu 1 295 -14 192 77 0 0 chr9 89155513 89155539 -28707088 + (TTG)n Simple_repeat Simple_repeat 2 27 0 248 321 14 29 chr9 89156185 89156325 -28706302 + L2 LINE L2 1879 2016 -1298 800 363 92 21 chr9 89156366 89157410 -28705217 + L2 LINE L2 2115 3234 -38 515 315 113 10 chr9 89159480 89159683 -28702944 + MIR SINE MIR 20 243 -19 257 188 65 109 chr9 89161496 89161634 -28700993 - MIR SINE MIR -7 255 124 845 150 0 0 chr9 89163230 89163357 -28699270 + FLAM_C SINE Alu 1 127 -16 2163 117 0 0 chr9 89163604 89163885 -28698742 - AluSx SINE Alu -30 282 2 251 296 80 0 chr9 89165464 89165552 -28697075 - L2 LINE L2 -17 3296 3202 556 318 55 39 chr9 89165753 89166008 -28696619 + MIR SINE MIR 1 259 -3 270 0 0 0 chr9 89166196 89166226 -28696401 + (CA)n Simple_repeat Simple_repeat 1 30 0 222 118 0 0 chr9 89166535 89166569 -28696058 + (CA)n Simple_repeat Simple_repeat 2 35 0 214 302 0 0 chr9 89166831 89166894 -28695733 - L2 LINE L2 -2 3270 3208 311 260 47 60 chr9 89167070 89167220 -28695407 - L2 LINE L2 -191 3081 2934 438 299 113 51 chr9 89167300 89167866 -28694761 - L2 LINE L2 -559 2755 2155 195 261 109 0 chr9 89168056 89168148 -28694479 - MIR SINE MIR -160 102 1 771 246 128 25 chr9 89168330 89168611 -28694016 + MER5C DNA MER1_type 1 310 -14 299 264 132 0 chr9 89169504 89169610 -28693017 + L2 LINE L2 2931 3050 -263 225 0 0 0 chr9 89169618 89169643 -28692984 + (TG)n Simple_repeat Simple_repeat 1 25 0 240 35 0 0 chr9 89170642 89170671 -28691956 + (TTCA)n Simple_repeat Simple_repeat 2 30 0 383 333 32 0 chr9 89170673 89170799 -28691828 - L2 LINE L2 -6 3266 3137 901 266 121 45 chr9 89170958 89171022 -28691605 + MLT1F1 LTR MaLR 1 59 -508 2222 124 0 0 chr9 89171022 89171320 -28691307 + AluSx SINE Alu 1 298 -14 901 266 121 45 chr9 89171320 89171782 -28690845 + MLT1F1 LTR MaLR 59 567 0 390 299 153 0 chr9 89171829 89171986 -28690641 + MER5A DNA MER1_type 9 189 0 619 290 14 37 chr9 89172110 89172327 -28690300 - MIR SINE MIR -21 241 30 341 222 82 77 chr9 89173416 89173610 -28689017 + L1ME3A LINE L1 5976 6170 0 498 182 131 0 chr9 89173692 89173791 -28688836 - FLAM_A SINE Alu -15 127 16 366 23 0 0 chr9 89174752 89174795 -28687832 + (TG)n Simple_repeat Simple_repeat 2 44 0 242 321 60 0 chr9 89174982 89175116 -28687511 + L1MC/D LINE L1 5709 5850 -1958 22 35 0 0 chr9 89175211 89175240 -28687387 + AT_rich Low_complexity Low_complexity 1 29 0 811 90 0 0 chr9 89176293 89176404 -28686223 + L1PA5 LINE L1 6044 6154 0 240 340 50 0 chr9 89176567 89176667 -28685960 - L2 LINE L2 0 3272 3168 507 33 0 0 chr9 89177283 89177318 -28685309 + (TCCA)n Simple_repeat Simple_repeat 1 96 0 507 33 0 0 chr9 89177318 89177379 -28685248 + (TCCA)n Simple_repeat Simple_repeat 3 63 0 4014 108 19 3 chr9 89177428 89178018 -28684609 - L1PA15 LINE L1 -2 6163 5565 262 352 38 0 chr9 89178429 89178534 -28684093 + MIR SINE MIR 36 144 -118 * 345 320 53 40 chr9 89178532 89178757 -28683870 + L3 LINE CR1 1233 1460 -117 1041 164 6 6 chr9 89178956 89179127 -28683500 - AluJb SINE Alu -20 292 122 1773 152 3 24 chr9 89179348 89179637 -28682990 - AluSx SINE Alu -29 283 1 235 284 105 21 chr9 89179878 89179919 -28682708 + L2 LINE L2 3196 3232 -81 1322 220 186 28 chr9 89179919 89180355 -28682272 - MLT1D LTR MaLR 0 505 1 235 284 105 21 chr9 89180355 89180408 -28682219 + L2 LINE L2 3232 3298 -15 544 305 47 35 chr9 89180492 89180748 -28681879 + MIR SINE MIR 4 262 0 1816 137 7 15 chr9 89181284 89181579 -28681048 - AluSx SINE Alu 0 308 16 1211 137 104 0 chr9 89181628 89181840 -28680787 + L1PA11 LINE L1 5939 6172 -2 25 0 0 0 chr9 89181865 89181890 -28680737 + AT_rich Low_complexity Low_complexity 1 25 0 21 95 0 0 chr9 89181998 89182061 -28680566 + AT_rich Low_complexity Low_complexity 1 63 0 1855 148 0 31 chr9 89182198 89182489 -28680138 + AluJo SINE Alu 1 282 -30 469 278 17 83 chr9 89184940 89185120 -28677507 + MER91A DNA MER1_type 29 196 0 559 165 0 102 chr9 89187454 89187510 -28675117 + MER94 DNA DNA 1 40 -94 1733 174 3 7 chr9 89187510 89187819 -28674808 + AluJo SINE Alu 1 308 0 559 165 0 102 chr9 89187819 89187888 -28674739 + MER94 DNA DNA 40 114 -20 208 277 176 14 chr9 89189207 89189355 -28673272 - MIR3 SINE MIR -2 206 35 266 283 22 11 chr9 89189464 89189556 -28673071 + MER102b DNA MER1_type 247 339 -2 202 284 0 40 chr9 89190135 89190209 -28672418 + MIR SINE MIR 20 90 -118 187 324 0 15 chr9 89190291 89190359 -28672268 + L3 LINE CR1 1511 1577 0 269 247 86 69 chr9 89190625 89190799 -28671828 - L1MC5 LINE L1 -74 7887 7711 695 223 70 51 chr9 89190833 89191048 -28671579 + MIR SINE MIR 1 219 -43 290 281 79 18 chr9 89191476 89191590 -28671037 + L2 LINE L2 3187 3307 -6 2258 107 17 0 chr9 89192957 89193255 -28669372 - AluSx SINE Alu -9 303 1 392 201 63 69 chr9 89193662 89193821 -28668806 + MER103 DNA DNA 8 165 -1 767 168 8 0 chr9 89193860 89193979 -28668648 + FLAM_C SINE Alu 2 121 -12 359 264 21 74 chr9 89194197 89194389 -28668238 + L1ME4a LINE L1 5739 5920 -201 318 185 18 3 chr9 89194389 89194455 -28668172 + MIR SINE MIR 24 89 -119 1643 202 100 8 chr9 89194525 89194884 -28667743 + MLT1D LTR MaLR 1 392 -113 1597 212 35 12 chr9 89194884 89195229 -28667398 - MLT1A2 LTR MaLR -1 373 21 387 129 8 220 chr9 89195361 89195425 -28667202 + MLT1D LTR MaLR 402 426 -79 752 140 35 0 chr9 89195425 89195539 -28667088 - FLAM_C SINE Alu -14 119 2 387 129 8 220 chr9 89195539 89195606 -28667021 + MLT1D LTR MaLR 426 505 0 22 0 0 0 chr9 89195735 89195757 -28666870 + AT_rich Low_complexity Low_complexity 1 22 0 1236 180 52 26 chr9 89197425 89197658 -28664969 - AluJo SINE Alu -15 297 59 294 268 181 0 chr9 89197766 89197893 -28664734 - MIR SINE MIR -82 180 31 2162 119 7 0 chr9 89197942 89198235 -28664392 - AluSx SINE Alu -11 301 7 2513 67 0 22 chr9 89199005 89199321 -28663306 + AluY SINE Alu 1 309 -2 414 221 39 29 chr9 89200237 89200341 -28662286 + MIR SINE MIR 20 124 -138 959 183 90 115 chr9 89200369 89200692 -28661935 + MER46C DNA MER2_type 1 315 -23 1564 167 61 27 chr9 89201777 89202070 -28660557 - AluJo SINE Alu -9 303 1 359 328 97 41 chr9 89202468 89202758 -28659869 + L2 LINE L2 2900 3205 -67 2234 97 0 64 chr9 89202817 89203147 -28659480 + AluSx SINE Alu 1 309 -3 378 121 0 96 chr9 89204209 89204292 -28658335 + MLT1A1 LTR MaLR 1 75 -290 1969 220 284 34 chr9 89204535 89205394 -28657233 + L1MC4 LINE L1 6468 7541 -501 358 175 0 0 chr9 89205393 89205450 -28657177 + L1MC4 LINE L1 7845 7901 -141 * 224 253 127 0 chr9 89205628 89205707 -28656920 - MER5C DNA MER1_type -6 318 230 380 234 122 0 chr9 89205731 89205838 -28656789 - MER5C DNA MER1_type -200 124 5 186 192 0 0 chr9 89208101 89208153 -28654474 + (CTG)n Simple_repeat Simple_repeat 1 52 0 1361 160 157 4 chr9 89209890 89210020 -28652607 - AluJb SINE Alu 0 302 193 192 40 0 0 chr9 89210020 89210045 -28652582 + (TA)n Simple_repeat Simple_repeat 2 26 0 1361 160 157 4 chr9 89210045 89210176 -28652451 - AluJb SINE Alu -109 193 1 21 71 0 0 chr9 89210839 89210881 -28651746 + AT_rich Low_complexity Low_complexity 1 42 0 1855 139 31 11 chr9 89210918 89211205 -28651422 - AluJo SINE Alu -19 293 1 1668 156 42 25 chr9 89212297 89212580 -28650047 + AluSx SINE Alu 1 288 -24 1611 165 114 0 chr9 89212580 89212852 -28649775 + AluSx SINE Alu 1 303 -9 2040 96 0 28 chr9 89212856 89213138 -28649489 + AluSq SINE Alu 7 280 -33 351 0 0 0 chr9 89213138 89213177 -28649450 + (CA)n Simple_repeat Simple_repeat 1 39 0 249 286 0 16 chr9 89215697 89215785 -28646842 - MIR SINE MIR -86 122 37 221 210 16 0 chr9 89220099 89220161 -28642466 + (TG)n Simple_repeat Simple_repeat 1 63 0 335 278 9 26 chr9 89221586 89221629 -28640998 + (CA)n Simple_repeat Simple_repeat 2 44 -70 1476 163 77 89 chr9 89221629 89222021 -28640606 + MLT1B LTR MaLR 1 387 -3 335 278 9 26 chr9 89222021 89222092 -28640535 + (CA)n Simple_repeat Simple_repeat 44 114 0 1312 153 30 25 chr9 89222878 89223114 -28639513 + AluJb SINE Alu 1 237 -75 25 51 0 0 chr9 89224266 89224305 -28638322 + AT_rich Low_complexity Low_complexity 1 39 0 2314 89 0 7 chr9 89224407 89224698 -28637929 + AluSx SINE Alu 3 291 -21 448 244 93 21 chr9 89225355 89225585 -28637042 + L1MC4a LINE L1 5209 5456 -782 661 298 46 26 chr9 89225639 89225838 -28636789 + L1MC4a LINE L1 5566 5775 -2033 2452 97 0 0 chr9 89225838 89226147 -28636480 - AluSc SINE Alu 0 309 1 661 298 46 26 chr9 89226147 89226252 -28636375 + L1MC4a LINE L1 5775 5876 -1932 249 254 0 0 chr9 89226316 89226375 -28636252 + (TATG)n Simple_repeat Simple_repeat 4 62 0 2051 125 3 3 chr9 89226662 89226949 -28635678 + AluSx SINE Alu 1 287 -25 25 0 0 0 chr9 89226951 89226976 -28635651 + AT_rich Low_complexity Low_complexity 1 25 0 238 209 45 0 chr9 89226978 89227045 -28635582 + (TA)n Simple_repeat Simple_repeat 2 71 0 421 291 52 0 chr9 89227061 89227195 -28635432 - L1MC/D LINE L1 -2043 5765 5625 348 24 0 0 chr9 89227195 89227236 -28635391 + (CA)n Simple_repeat Simple_repeat 2 42 0 200 140 35 35 chr9 89227241 89227298 -28635329 + (TA)n Simple_repeat Simple_repeat 2 58 0 201 147 0 0 chr9 89227303 89227337 -28635290 + (TC)n Simple_repeat Simple_repeat 2 35 0 994 176 102 21 chr9 89227361 89227681 -28634946 + MSTD LTR MaLR 1 428 0 2006 141 0 25 chr9 89227785 89228104 -28634523 + AluJb SINE Alu 1 311 -1 378 143 0 0 chr9 89228791 89228854 -28633773 + (CA)n Simple_repeat Simple_repeat 1 63 0 223 245 22 24 chr9 89230632 89230723 -28631904 + MIR SINE MIR 69 158 -63 2110 196 54 14 chr9 89230728 89231172 -28631455 + MLT1C LTR MaLR 6 467 0 2339 82 0 30 chr9 89231377 89231681 -28630946 + AluSq SINE Alu 1 295 -18 2059 99 0 32 chr9 89231698 89232020 -28630607 + AluSc SINE Alu 35 347 0 679 251 47 17 chr9 89232269 89232504 -28630123 - MIR SINE MIR -10 252 11 531 280 108 14 chr9 89232697 89232911 -28629716 - MIR SINE MIR -1 261 28 288 0 0 0 chr9 89233481 89233513 -28629114 + (TAAAAA)n Simple_repeat Simple_repeat 3 34 0 21 0 0 0 chr9 89233788 89233809 -28628818 + AT_rich Low_complexity Low_complexity 1 21 0 1840 192 0 3 chr9 89233817 89234130 -28628497 + AluJb SINE Alu 1 312 0 2269 115 7 0 chr9 89234363 89234667 -28627960 + AluSx SINE Alu 1 306 -6 1636 151 44 17 chr9 89234978 89235276 -28627351 - L1MA8 LINE L1 -2 6289 5984 669 99 0 30 chr9 89235282 89235383 -28627244 - L1MA8 LINE L1 -610 5681 5584 2313 104 3 13 chr9 89235858 89236174 -28626453 - AluSp SINE Alu 0 313 1 22 0 0 0 chr9 89236354 89236376 -28626251 + AT_rich Low_complexity Low_complexity 1 22 0 861 136 43 12 chr9 89236401 89236563 -28626064 - L1MB4 LINE L1 0 6180 6014 2357 84 13 3 chr9 89236797 89237105 -28625522 + AluSq SINE Alu 1 311 -2 2070 112 0 30 chr9 89237346 89237642 -28624985 + AluSx SINE Alu 5 291 -21 1352 156 22 0 chr9 89237825 89238050 -28624577 - L1MA5A LINE L1 -7 6290 6061 594 304 69 49 chr9 89241882 89242228 -28620399 - L2 LINE L2 0 3272 2920 230 75 50 0 chr9 89242588 89242628 -28619999 + G-rich Low_complexity Low_complexity 1 42 0 326 325 100 0 chr9 89243082 89243242 -28619385 + MIR SINE MIR 48 223 -39 326 195 12 0 chr9 89245128 89245210 -28617417 + (TA)n Simple_repeat Simple_repeat 2 84 0 343 211 137 11 chr9 89246548 89246643 -28615984 + MIR SINE MIR 21 127 -81 218 250 0 0 chr9 89246646 89246684 -28615943 + L2 LINE L2 3258 3298 -15 641 120 32 32 chr9 89246684 89246809 -28615818 - L1MB7 LINE L1 0 6184 6060 218 250 0 0 chr9 89246809 89246826 -28615801 + L2 LINE L2 3297 3313 0 277 221 14 47 chr9 89246869 89247010 -28615617 - MIR SINE MIR -52 210 15 9962 40 108 2 chr9 89247028 89248288 -28614339 + SVA Other Other 28 1386 0 1568 188 72 7 chr9 89248643 89248760 -28613867 + AluJo SINE Alu 1 109 -203 207 0 0 0 chr9 89248760 89248783 -28613844 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 1568 188 72 7 chr9 89248783 89248958 -28613669 + AluJo SINE Alu 109 312 0 2576 138 57 5 chr9 89250423 89250830 -28611797 + MSTA LTR MaLR 1 428 0 947 172 93 20 chr9 89251081 89251285 -28611342 - MER20 DNA MER1_type 0 219 1 244 319 174 14 chr9 89251345 89251558 -28611069 - L2 LINE L2 -217 3055 2809 21 0 0 0 chr9 89252026 89252047 -28610580 + AT_rich Low_complexity Low_complexity 1 21 0 1141 258 106 52 chr9 89252122 89252583 -28610044 + MLT1K LTR MaLR 61 546 -42 2135 139 0 0 chr9 89252866 89253160 -28609467 - AluSx SINE Alu -18 294 1 475 234 39 0 chr9 89253316 89253444 -28609183 + L1ME1 LINE L1 6033 6165 -1 2529 78 0 0 chr9 89253448 89253757 -28608870 + AluY SINE Alu 1 309 -2 210 37 0 0 chr9 89253779 89253806 -28608821 + (CA)n Simple_repeat Simple_repeat 1 27 0 520 161 50 144 chr9 89256069 89256191 -28606436 + MER3 DNA MER1_type 47 148 -61 2295 109 3 0 chr9 89256191 89256502 -28606125 + AluSx SINE Alu 1 312 0 520 161 50 144 chr9 89256502 89256559 -28606068 + MER3 DNA MER1_type 148 209 0 4330 104 24 11 chr9 89256577 89257203 -28605424 + MER51A LTR ERV1 1 634 0 486 273 162 8 chr9 89257243 89257496 -28605131 + L2 LINE L2 3022 3313 0 224 319 42 34 chr9 89257956 89258075 -28604552 - L2 LINE L2 -180 3092 2973 356 341 64 34 chr9 89258133 89258397 -28604230 - L2 LINE L2 -350 2964 2693 240 273 0 0 chr9 89258784 89258839 -28603788 - L2 LINE L2 -8 3305 3251 406 249 230 72 chr9 89258971 89259082 -28603545 - HAL1 LINE L1 -22 2485 2393 2292 101 3 0 chr9 89259082 89259379 -28603248 - AluSq SINE Alu -9 304 7 406 249 230 72 chr9 89259379 89259820 -28602807 - HAL1 LINE L1 -114 2393 1846 267 277 0 0 chr9 89259841 89259924 -28602703 - HAL1 LINE L1 -736 1771 1689 1224 177 106 59 chr9 89260083 89260170 -28602457 - MER2 DNA MER2_type 0 345 264 2401 89 0 16 chr9 89260170 89260485 -28602142 + AluY SINE Alu 1 310 -1 1224 177 106 59 chr9 89260485 89260719 -28601908 - MER2 DNA MER2_type -81 264 9 1059 281 97 10 chr9 89260758 89261570 -28601057 - HAL1 LINE L1 -177 2330 1417 236 282 51 0 chr9 89261675 89261753 -28600874 + HAL1 LINE L1 204 285 -2222 369 228 0 152 chr9 89261830 89261897 -28600730 - HAL1 LINE L1 -2362 145 118 1665 140 13 51 chr9 89261897 89262039 -28600588 + L1MB3 LINE L1 5872 6018 -165 2516 80 3 0 chr9 89262039 89262350 -28600277 - AluSp SINE Alu -1 312 1 1665 140 13 51 chr9 89262350 89262522 -28600105 + L1MB3 LINE L1 6018 6174 -9 369 228 0 152 chr9 89262522 89262625 -28600002 - HAL1 LINE L1 -2389 118 1 1848 109 116 4 chr9 89262853 89263128 -28599499 + AluSq SINE Alu 1 306 -7 194 303 36 100 chr9 89263252 89263503 -28599124 + L3 LINE CR1 1150 1384 -193 2270 104 0 16 chr9 89264229 89264546 -28598081 + AluSx SINE Alu 1 312 0 189 250 0 58 chr9 89264993 89265045 -28597582 + L2 LINE L2 3242 3290 -23 2333 104 0 0 chr9 89265114 89265421 -28597206 - AluSx SINE Alu -4 308 2 2144 104 0 0 chr9 89265698 89265977 -28596650 - AluSx SINE Alu -14 298 20 1001 189 17 80 chr9 89266985 89267168 -28595459 + MER58A DNA MER1_type 1 167 -2253 2531 81 0 0 chr9 89267168 89267476 -28595151 - AluSg SINE Alu -2 308 1 1001 189 17 80 chr9 89267476 89267530 -28595097 + MER58A DNA MER1_type 167 223 -1 198 291 35 78 chr9 89267637 89267778 -28594849 + MIR SINE MIR 13 147 -61 588 318 16 41 chr9 89267861 89268106 -28594521 - MIR SINE MIR -1 261 23 262 105 18 18 chr9 89268688 89268745 -28593882 + (TA)n Simple_repeat Simple_repeat 1 57 0 400 287 90 11 chr9 89268757 89268964 -28593663 + L1ME4a LINE L1 5605 5825 -296 1053 194 122 73 chr9 89268998 89269466 -28593161 + L1MC4 LINE L1 7552 8042 0 183 80 0 0 chr9 89269603 89269628 -28592999 + (GAAA)n Simple_repeat Simple_repeat 2 26 0 453 199 48 41 chr9 89269654 89269800 -28592827 + L1ME4a LINE L1 5973 6119 -2 2458 103 0 0 chr9 89270177 89270489 -28592138 - AluSx SINE Alu 0 312 1 2439 218 58 27 chr9 89270573 89270882 -28591745 - L1MC4 LINE L1 -142 7900 7602 681 221 0 0 chr9 89270882 89271004 -28591623 - FLAM_A SINE Alu -11 122 1 2439 218 58 27 chr9 89271004 89271317 -28591310 - L1MC4 LINE L1 -440 7602 7259 423 132 26 13 chr9 89273951 89274027 -28588600 + MER116 DNA Mariner 1 77 -3 2218 123 0 7 chr9 89274029 89274330 -28588297 - AluSx SINE Alu -13 299 1 25 90 0 0 chr9 89274754 89274821 -28587806 + AT_rich Low_complexity Low_complexity 1 67 0 185 358 63 0 chr9 89274908 89275003 -28587624 + MIR SINE MIR 44 144 -118 2026 133 0 10 chr9 89276377 89276671 -28585956 + AluJb SINE Alu 1 291 -21 26 0 0 0 chr9 89276671 89276697 -28585930 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr9 89277326 89277347 -28585280 + AT_rich Low_complexity Low_complexity 1 21 0 1839 162 0 14 chr9 89278495 89278791 -28583836 - AluJo SINE Alu -16 296 5 705 242 26 34 chr9 89278795 89279003 -28583624 - MIR SINE MIR -56 206 1 2477 141 29 13 chr9 89279222 89279675 -28582952 + L1MB3 LINE L1 5721 6180 -3 1614 186 14 7 chr9 89279684 89280009 -28582618 + AluJo SINE Alu 1 312 0 466 198 0 0 chr9 89280667 89280748 -28581879 - AluJ/FLAM SINE Alu -229 83 3 1540 150 17 83 chr9 89281277 89281466 -28581161 + MLT1B LTR MaLR 5 144 -246 2329 110 0 13 chr9 89281466 89281776 -28580851 + AluSq SINE Alu 1 306 -7 1540 150 17 83 chr9 89281776 89281947 -28580680 + MLT1B LTR MaLR 144 325 -65 572 113 270 0 chr9 89281949 89282064 -28580563 - MER4C LTR ERV1 -20 445 300 1250 138 135 60 chr9 89282126 89282444 -28580183 - MER4A LTR ERV1 -322 342 1 597 103 0 0 chr9 89282448 89282526 -28580101 + MLT1B LTR MaLR 313 390 0 2856 77 16 0 chr9 89282737 89283113 -28579514 + L1PA10 LINE L1 5776 6157 -11 311 287 125 7 chr9 89283240 89283376 -28579251 + MIR SINE MIR 13 164 -98 1175 128 0 0 chr9 89283376 89283532 -28579095 + AluSx SINE Alu 6 161 -151 314 159 14 0 chr9 89283534 89283603 -28579024 + (TA)n Simple_repeat Simple_repeat 1 70 0 2075 104 0 4 chr9 89284332 89284611 -28578016 + AluSc SINE Alu 23 300 -9 1761 137 41 0 chr9 89284834 89285105 -28577522 + AluSx SINE Alu 28 309 -3 2352 97 3 0 chr9 89286010 89286319 -28576308 + AluSx SINE Alu 1 310 -2 196 297 16 0 chr9 89286900 89286964 -28575663 - L3b LINE CR1 -217 1366 1302 814 189 18 24 chr9 89287092 89287256 -28575371 - MER20 DNA MER1_type 0 219 57 398 267 0 0 chr9 89287390 89287491 -28575136 - MER5A DNA MER1_type -80 109 9 2267 94 10 3 chr9 89287532 89287839 -28574788 + AluSc SINE Alu 1 309 0 212 309 21 11 chr9 89287854 89287948 -28574679 + MIR SINE MIR 48 142 -120 535 136 12 0 chr9 89287984 89288065 -28574562 + FRAM SINE Alu 72 153 -23 863 170 0 0 chr9 89289547 89289688 -28572939 + MLT1A1 LTR MaLR 1 141 -224 2182 110 3 16 chr9 89289715 89290047 -28572580 + AluSq SINE Alu 3 313 0 1848 136 3 77 chr9 89290313 89290637 -28571990 + AluJo SINE Alu 1 300 -12 2393 85 3 0 chr9 89290798 89291092 -28571535 - AluSp SINE Alu -18 295 1 2290 103 3 10 chr9 89291653 89291965 -28570662 - AluSx SINE Alu -1 311 2 238 225 0 113 chr9 89292894 89292974 -28569653 - MER69 DNA AcHobo -2455 71 1 2389 98 0 0 chr9 89293008 89293303 -28569324 + AluY SINE Alu 1 295 -16 2333 111 13 0 chr9 89294282 89294589 -28568038 + AluSq SINE Alu 1 311 -2 23 33 0 0 chr9 89295807 89295837 -28566790 + GC_rich Low_complexity Low_complexity 1 30 0 268 317 0 0 chr9 89296861 89296943 -28565684 + (TG)n Simple_repeat Simple_repeat 1 82 0 221 100 50 0 chr9 89298092 89298132 -28564495 + CT-rich Low_complexity Low_complexity 3 44 0 2464 79 3 0 chr9 89298442 89298745 -28563882 + AluSp SINE Alu 1 304 -9 193 205 26 0 chr9 89298970 89299009 -28563618 + L2 LINE L2 3225 3264 -8 852 160 263 11 chr9 89299103 89299278 -28563349 + MER20 DNA MER1_type 1 219 0 315 188 89 107 chr9 89299317 89299342 -28563285 - MER5A DNA MER1_type -40 149 125 2176 105 7 7 chr9 89299342 89299648 -28562979 + AluSg SINE Alu 1 306 -4 315 188 89 107 chr9 89299648 89299734 -28562893 - MER5A DNA MER1_type -64 125 40 * 414 221 97 9 chr9 89299649 89299762 -28562865 + MER5A DNA MER1_type 67 189 0 284 281 0 0 chr9 89300529 89300560 -28562067 + A-rich Low_complexity Low_complexity 1 31 -51 2415 94 7 0 chr9 89300560 89300869 -28561758 + AluSx SINE Alu 1 311 -1 284 281 0 0 chr9 89300869 89300919 -28561708 + A-rich Low_complexity Low_complexity 30 82 0 272 301 59 50 chr9 89301054 89301191 -28561436 + L1MC/D LINE L1 5200 5334 -1158 1974 147 10 13 chr9 89301191 89301504 -28561123 + AluJb SINE Alu 1 312 0 272 301 59 50 chr9 89301504 89301808 -28560819 + L1MC/D LINE L1 5334 5645 -847 1677 129 148 10 chr9 89302102 89302413 -28560214 + L1MA2 LINE L1 5951 6304 0 1904 116 4 0 chr9 89302807 89303065 -28559562 - AluSp SINE Alu -54 259 1 243 265 24 36 chr9 89303325 89303408 -28559219 + MER5A DNA MER1_type 108 189 0 191 35 0 35 chr9 89305132 89305161 -28557466 + (TCTCC)n Simple_repeat Simple_repeat 5 32 0 * 367 158 0 40 chr9 89305157 89305258 -28557369 + CT-rich Low_complexity Low_complexity 3 99 0 355 227 13 0 chr9 89305293 89305368 -28557259 - Charlie8 DNA MER1_type 0 2417 2342 204 40 0 0 chr9 89305492 89305517 -28557110 + (CTG)n Simple_repeat Simple_repeat 2 26 0 454 244 79 24 chr9 89305640 89305767 -28556860 + MIR SINE MIR 1 134 -128 278 217 264 0 chr9 89305749 89305878 -28556749 + L2 LINE L2 1564 1726 -1588 * 1652 162 4 14 chr9 89305934 89306212 -28556415 - AluJb SINE Alu -7 305 31 2157 98 20 7 chr9 89306257 89306553 -28556074 - AluSq SINE Alu -13 300 1 1332 263 83 36 chr9 89306587 89306842 -28555785 + L2 LINE L2 1739 1980 -1333 1468 182 47 14 chr9 89306842 89307155 -28555472 - AluJo SINE Alu 0 322 1 1332 263 83 36 chr9 89307155 89307700 -28554927 + L2 LINE L2 1980 3302 -11 2369 81 3 19 chr9 89307704 89308013 -28554614 + AluSp SINE Alu 1 304 -9 997 276 87 34 chr9 89308165 89308799 -28553828 - L2 LINE L2 -143 3170 2512 2176 86 27 7 chr9 89308975 89309267 -28553360 + AluY SINE Alu 1 298 -13 341 146 43 76 chr9 89309286 89309471 -28553156 + (CATATA)n Simple_repeat Simple_repeat 2 180 0 238 172 90 28 chr9 89309454 89309599 -28553028 + (TA)n Simple_repeat Simple_repeat 1 154 0 * 493 160 76 10 chr9 89309614 89310032 -28552595 + (TA)n Simple_repeat Simple_repeat 1 445 0 2341 77 27 0 chr9 89310307 89310605 -28552022 + AluSq SINE Alu 1 306 -7 2277 112 3 3 chr9 89310752 89311064 -28551563 + AluSp SINE Alu 1 312 -1 418 294 61 30 chr9 89311166 89311363 -28551264 + MIR SINE MIR 56 258 -4 21 0 0 0 chr9 89311492 89311513 -28551114 + AT_rich Low_complexity Low_complexity 1 21 0 660 330 14 5 chr9 89311560 89311772 -28550855 + MIR SINE MIR 28 241 -21 205 188 62 0 chr9 89311774 89311822 -28550805 + GA-rich Low_complexity Low_complexity 1 51 0 23 0 0 0 chr9 89312251 89312274 -28550353 + AT_rich Low_complexity Low_complexity 1 23 0 1389 214 18 14 chr9 89312274 89312418 -28550209 - AluJb SINE Alu -30 282 140 567 70 10 20 chr9 89312418 89312518 -28550109 + (TTTA)n Simple_repeat Simple_repeat 2 100 0 2215 96 0 0 chr9 89312518 89312798 -28549829 - AluSg SINE Alu -29 281 2 1389 214 18 14 chr9 89312798 89312933 -28549694 - AluJb SINE Alu -171 141 1 180 0 0 0 chr9 89313129 89313149 -28549478 + (T)n Simple_repeat Simple_repeat 1 20 0 887 233 38 0 chr9 89313499 89313709 -28548918 + MIR SINE MIR 44 261 -1 2077 115 0 22 chr9 89313784 89314097 -28548530 + AluSx SINE Alu 5 310 -2 2117 180 150 40 chr9 89314624 89315203 -28547424 + LTR48B LTR ERV1 1 643 -1 584 173 0 3 chr9 89316358 89316499 -28546128 + MER53 DNA DNA 1 184 -5 700 296 59 0 chr9 89316608 89316811 -28545816 + MIR SINE MIR 48 262 0 2270 108 3 0 chr9 89318143 89318448 -28544179 - AluSx SINE Alu -6 306 1 980 174 28 38 chr9 89318542 89318755 -28543872 + L1MB3 LINE L1 5971 6181 -2 1763 169 17 3 chr9 89318832 89319133 -28543494 + AluJb SINE Alu 2 306 -6 2084 204 10 29 chr9 89319320 89319805 -28542822 + L1MB8 LINE L1 5300 5776 -402 22 0 0 0 chr9 89320335 89320357 -28542270 + AT_rich Low_complexity Low_complexity 1 22 0 1890 164 0 10 chr9 89320410 89320708 -28541919 - AluJb SINE Alu -17 295 1 1149 203 65 97 chr9 89320708 89321121 -28541506 + L1MB8 LINE L1 5779 6178 0 192 97 0 0 chr9 89321231 89321262 -28541365 + (TTTTTA)n Simple_repeat Simple_repeat 3 33 0 1485 160 0 8 chr9 89321262 89321500 -28541127 - AluJb SINE Alu -76 236 1 2311 96 6 3 chr9 89321596 89321908 -28540719 + AluSp SINE Alu 1 313 0 6542 29 0 0 chr9 89321908 89322667 -28539960 + L1PA4 LINE L1 5432 6190 0 526 179 0 0 chr9 89322861 89322945 -28539682 - FLAM_C SINE Alu -9 134 51 287 273 99 38 chr9 89323288 89323414 -28539213 + MER5A DNA MER1_type 25 149 -29 1210 206 65 84 chr9 89323739 89324098 -28538529 - MLT1C LTR MaLR 0 467 116 1995 137 14 0 chr9 89324098 89324382 -28538245 - AluSx SINE Alu -24 288 1 1210 206 65 84 chr9 89324382 89324439 -28538188 - MLT1C LTR MaLR -351 116 59 823 124 113 113 chr9 89324440 89324507 -28538120 - MSTA LTR MaLR -2 426 360 2225 123 0 3 chr9 89324507 89324809 -28537818 - AluSx SINE Alu -11 301 1 823 124 113 113 chr9 89324809 89324926 -28537701 - MSTA LTR MaLR -67 361 242 4137 148 47 34 chr9 89325244 89325949 -28536678 - L1PA16 LINE L1 0 6166 5449 2182 110 3 3 chr9 89325949 89326250 -28536377 - AluSc SINE Alu -8 301 1 4137 148 47 34 chr9 89326250 89326309 -28536318 - L1PA16 LINE L1 -717 5449 5392 2055 141 0 7 chr9 89326579 89326883 -28535744 + AluSx SINE Alu 1 302 -10 2239 98 0 0 chr9 89327184 89327480 -28535147 + AluSc SINE Alu 1 296 -13 2387 57 0 0 chr9 89328043 89328325 -28534302 + AluY SINE Alu 13 294 -17 285 143 0 0 chr9 89328950 89328992 -28533635 - 5S rRNA rRNA -79 42 1 1873 116 14 31 chr9 89329555 89329881 -28532746 - AluSq SINE Alu 0 313 11 447 106 0 0 chr9 89330340 89330406 -28532221 + (TA)n Simple_repeat Simple_repeat 2 67 0 2290 100 0 23 chr9 89330406 89330715 -28531912 - AluSx SINE Alu -6 306 5 916 226 67 5 chr9 89331086 89331294 -28531333 - MER58A DNA MER1_type -3 221 1 265 233 16 101 chr9 89332021 89332150 -28530477 + MLT1H LTR MaLR 237 354 -195 252 111 0 175 chr9 89332170 89332233 -28530394 + MLT1H LTR MaLR 498 549 0 2139 139 7 0 chr9 89332887 89333197 -28529430 - AluSx SINE Alu 0 312 1 180 153 28 14 chr9 89333960 89334032 -28528595 + (TA)n Simple_repeat Simple_repeat 2 74 0 240 184 31 0 chr9 89334096 89334194 -28528433 + (TA)n Simple_repeat Simple_repeat 2 102 0 2398 84 13 0 chr9 89334194 89334492 -28528135 - AluSp SINE Alu -11 302 1 34 84 0 0 chr9 89334509 89334592 -28528035 + AT_rich Low_complexity Low_complexity 1 83 0 387 179 60 12 chr9 89334653 89334821 -28527806 + (TA)n Simple_repeat Simple_repeat 1 176 0 2514 70 0 0 chr9 89335477 89335777 -28526850 - AluY SINE Alu -11 300 1 182 91 30 0 chr9 89335923 89335956 -28526671 + A-rich Low_complexity Low_complexity 1 34 0 450 250 9 19 chr9 89336164 89336272 -28526355 + MLT1I LTR MaLR 3 109 -300 230 211 87 77 chr9 89336962 89337066 -28525561 + L2 LINE L2 2565 2669 -645 362 307 87 45 chr9 89337243 89337530 -28525097 + L2 LINE L2 2306 2604 -710 508 183 16 48 chr9 89337595 89337721 -28524906 + MER58C DNA MER1_type 10 131 -84 339 148 12 25 chr9 89337722 89337803 -28524824 + GA-rich Low_complexity Low_complexity 1 80 0 478 197 8 0 chr9 89337813 89337922 -28524705 + MER58B DNA MER1_type 104 341 0 238 366 52 30 chr9 89337962 89338194 -28524433 + L2 LINE L2 2737 2973 -341 2183 136 0 0 chr9 89339806 89340115 -28522512 - AluSx SINE Alu -3 309 1 34 24 0 0 chr9 89340323 89340364 -28522263 + AT_rich Low_complexity Low_complexity 1 41 0 21 36 0 0 chr9 89341184 89341212 -28521415 + AT_rich Low_complexity Low_complexity 1 28 0 207 0 0 0 chr9 89341323 89341346 -28521281 + (TTTTA)n Simple_repeat Simple_repeat 1 23 0 183 300 20 0 chr9 89342081 89342131 -28520496 + MIR SINE MIR 97 147 -61 1766 94 20 0 chr9 89342516 89342770 -28519857 + L1MA4 LINE L1 6037 6295 -5 916 290 96 32 chr9 89343237 89343675 -28518952 + L3 LINE CR1 303 768 -809 877 321 60 45 chr9 89344216 89344752 -28517875 + L3 LINE CR1 1032 1575 -2 291 294 162 34 chr9 89347869 89348134 -28514493 + L2 LINE L2 2282 2580 -734 2316 82 0 0 chr9 89348338 89348632 -28513995 + AluSx SINE Alu 2 295 -17 2526 44 0 0 chr9 89348975 89349270 -28513357 - AluY SINE Alu -6 305 11 1935 124 17 0 chr9 89349896 89350187 -28512440 + AluSx SINE Alu 1 296 -16 1049 140 39 6 chr9 89350565 89350769 -28511858 + AluSq SINE Alu 100 309 0 216 0 0 0 chr9 89352595 89352619 -28510008 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 827 219 12 0 chr9 89352777 89352937 -28509690 - FRAM SINE Alu -14 162 1 2056 96 0 7 chr9 89354233 89354526 -28508101 - AluY SINE Alu 0 311 21 672 243 82 53 chr9 89355837 89356080 -28506547 - MIR SINE MIR 0 262 13 258 116 0 0 chr9 89356261 89356304 -28506323 + (TTCA)n Simple_repeat Simple_repeat 3 45 0 2051 140 0 6 chr9 89356411 89356725 -28505902 - AluJo SINE Alu 0 312 1 303 205 77 26 chr9 89357007 89357085 -28505542 + L2 LINE L2 2752 2833 -481 237 289 41 52 chr9 89357196 89357293 -28505334 + L2 LINE L2 2992 3087 -185 1049 165 10 31 chr9 89357353 89357547 -28505080 + MER20 DNA MER1_type 1 190 -29 243 0 0 0 chr9 89358040 89358067 -28504560 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 229 152 0 0 chr9 89358071 89358104 -28504523 - AluY SINE Alu -269 33 1 1971 125 3 26 chr9 89358184 89358489 -28504138 + AluSx SINE Alu 1 298 -14 420 274 110 103 chr9 89358594 89359061 -28503566 + MLT1I LTR MaLR 49 549 0 282 116 0 0 chr9 89359096 89359139 -28503488 + (CA)n Simple_repeat Simple_repeat 2 44 0 414 270 203 0 chr9 89359345 89359508 -28503119 + MER91A DNA MER1_type 1 196 0 448 310 73 59 chr9 89361103 89361406 -28501221 + L3 LINE CR1 1270 1576 -1 1113 211 0 18 chr9 89361679 89361902 -28500725 + MER20 DNA MER1_type 1 219 0 2287 97 0 3 chr9 89361942 89362251 -28500376 - AluSq SINE Alu -5 308 1 485 302 47 19 chr9 89362278 89362490 -28500137 - MIR SINE MIR -43 219 2 189 0 0 0 chr9 89363026 89363047 -28499580 + (CAT)n Simple_repeat Simple_repeat 3 23 0 459 281 105 0 chr9 89363952 89364105 -28498522 - MIR3 SINE MIR -1 207 39 367 338 19 32 chr9 89365166 89365323 -28497304 - MER5A DNA MER1_type 0 189 35 192 97 0 0 chr9 89365350 89365381 -28497246 + (TTCC)n Simple_repeat Simple_repeat 2 32 0 2018 132 3 0 chr9 89366191 89366494 -28496133 - AluSx SINE Alu -8 304 1 234 250 221 52 chr9 89366637 89366809 -28495818 + MLT1H LTR MaLR 79 279 -270 1474 209 0 19 chr9 89367725 89368041 -28494586 + AluJo SINE Alu 1 310 -2 2414 75 0 3 chr9 89368492 89368797 -28493830 + AluSc SINE Alu 2 305 -4 2689 83 6 0 chr9 89369435 89369795 -28492832 + L1PA13 LINE L1 5802 6163 0 245 266 198 0 chr9 89370313 89370505 -28492122 - L1MC5 LINE L1 -36 7925 7696 1875 137 7 3 chr9 89370680 89370972 -28491655 + AluJb SINE Alu 5 297 -15 1995 127 3 0 chr9 89371635 89371926 -28490701 + AluSp SINE Alu 1 292 -21 259 238 50 25 chr9 89372442 89372522 -28490105 - L1M3f LINE L1 -5017 311 230 433 333 39 13 chr9 89373312 89373468 -28489159 - L2 LINE L2 -3 3269 3110 696 257 43 104 chr9 89373533 89373756 -28488871 + MLT1J LTR MaLR 1 236 -275 1866 156 3 19 chr9 89373756 89374070 -28488557 + AluJo SINE Alu 1 309 -3 696 257 43 104 chr9 89374070 89374142 -28488485 + MLT1J LTR MaLR 236 311 -200 2048 194 29 52 chr9 89374142 89374658 -28487969 - MLT1D LTR MaLR -1 504 1 696 257 43 104 chr9 89374658 89374804 -28487823 + MLT1J LTR MaLR 311 416 -95 254 300 80 0 chr9 89374887 89374987 -28487640 - L2 LINE L2 -237 3035 2928 1866 122 0 0 chr9 89375336 89375599 -28487028 + AluSx SINE Alu 31 293 -19 214 302 0 0 chr9 89375747 89375833 -28486794 + (TAA)n Simple_repeat Simple_repeat 2 87 0 656 310 52 4 chr9 89375842 89376071 -28486556 - MIR SINE MIR -15 247 8 374 339 69 40 chr9 89376153 89376430 -28486197 - L3 LINE CR1 -7 1570 1286 1045 235 106 102 chr9 89377066 89377494 -28485133 + MLT1J LTR MaLR 8 440 -71 2518 53 0 0 chr9 89377494 89377798 -28484829 + AluY SINE Alu 1 304 -7 1045 235 106 102 chr9 89377798 89377871 -28484756 + MLT1J LTR MaLR 440 511 0 306 286 76 9 chr9 89378305 89378410 -28484217 - L2 LINE L2 -1389 1925 1814 226 262 0 33 chr9 89378423 89378484 -28484143 + MLT1K LTR MaLR 5 63 -525 425 102 10 31 chr9 89378788 89378886 -28483741 + (TCTA)n Simple_repeat Simple_repeat 2 97 0 229 268 171 0 chr9 89379725 89379807 -28482820 + L2 LINE L2 3176 3271 -1 273 310 132 33 chr9 89380405 89380647 -28481980 + L2 LINE L2 1480 1745 -1569 245 218 36 0 chr9 89380763 89380818 -28481809 - MLT1J2 LTR MaLR -294 156 100 748 301 21 0 chr9 89380822 89381015 -28481612 + MLT1I LTR MaLR 203 399 -10 33 0 0 0 chr9 89381173 89381206 -28481421 + AT_rich Low_complexity Low_complexity 1 33 0 382 76 106 30 chr9 89381206 89381272 -28481355 - AluJb SINE Alu -166 136 66 3639 138 51 16 chr9 89381334 89381965 -28480662 + MER39B LTR ERV1 1 653 0 920 272 138 39 chr9 89382283 89382768 -28479859 - MLT1L LTR MaLR 0 615 83 22 0 0 0 chr9 89382910 89382932 -28479695 + AT_rich Low_complexity Low_complexity 1 22 0 1502 156 52 39 chr9 89382973 89383455 -28479172 + AluJb SINE Alu 1 486 0 44024 51 1 3 chr9 89383462 89389625 -28473002 + L1PA4 LINE L1 2 6155 0 1778 130 7 46 chr9 89390235 89390579 -28472048 - AluSx SINE Alu 0 312 1 273 170 100 100 chr9 89390585 89390685 -28471942 + L2 LINE L2 3199 3298 -15 282 275 169 14 chr9 89390693 89390835 -28471792 - L3 LINE CR1 -20 1557 1394 943 133 14 0 chr9 89390853 89390996 -28471631 - FRAM SINE Alu -12 164 20 205 328 82 15 chr9 89391258 89391392 -28471235 - MIR3 SINE MIR -11 197 55 441 269 134 8 chr9 89392265 89392399 -28470228 - MIR SINE MIR -55 207 57 1806 168 0 3 chr9 89392431 89392729 -28469898 - AluJb SINE Alu -15 297 1 230 400 0 8 chr9 89392744 89392874 -28469753 + (CA)n Simple_repeat Simple_repeat 2 130 0 2607 106 20 3 chr9 89393851 89394209 -28468418 + THE1B LTR MaLR 1 364 0 502 210 23 6 chr9 89395736 89395912 -28466715 + GA-rich Low_complexity Low_complexity 2 180 0 600 305 80 44 chr9 89396002 89396500 -28466127 + MLT1K LTR MaLR 21 580 -8 572 72 0 0 chr9 89396579 89396648 -28465979 + LTR23 LTR ERV1 320 388 -49 248 0 0 30 chr9 89396648 89396681 -28465946 + (TC)n Simple_repeat Simple_repeat 2 33 0 204 40 0 0 chr9 89396680 89396705 -28465922 + (TA)n Simple_repeat Simple_repeat 1 25 0 * 281 369 76 13 chr9 89396848 89397005 -28465622 - L3 LINE CR1 -1 1576 1410 1069 150 28 0 chr9 89397040 89397220 -28465407 + AluJo SINE Alu 124 308 -4 1544 176 100 67 chr9 89397228 89397648 -28464979 + MLT1C LTR MaLR 34 467 0 545 286 87 0 chr9 89397648 89397833 -28464794 - L3 LINE CR1 -159 1418 1218 1925 160 3 10 chr9 89398097 89398403 -28464224 + AluJo SINE Alu 1 304 -8 1914 143 43 3 chr9 89399276 89399576 -28463051 + AluSx SINE Alu 1 312 0 2235 122 39 28 chr9 89400513 89400873 -28461754 - THE1B LTR MaLR 0 364 1 248 111 22 0 chr9 89400909 89400954 -28461673 + CT-rich Low_complexity Low_complexity 3 48 0 844 137 19 0 chr9 89400966 89401127 -28461500 + CT-rich Low_complexity Low_complexity 3 166 0 992 293 45 30 chr9 89401616 89402057 -28460570 + MLT1L LTR MaLR 159 606 -9 2242 133 0 0 chr9 89402207 89402516 -28460111 + AluSg SINE Alu 1 309 -1 1868 130 15 0 chr9 89403686 89403956 -28458671 + AluSx SINE Alu 1 274 -38 535 133 41 0 chr9 89404058 89404156 -28458471 + AluSg/x SINE Alu 206 307 -2 2310 52 0 4 chr9 89404166 89404438 -28458189 - AluY SINE Alu -16 295 25 2405 93 0 3 chr9 89404595 89404907 -28457720 - AluSx SINE Alu -1 311 1 1522 155 16 74 chr9 89404916 89405225 -28457402 - AluJo SINE Alu -21 291 1 28 61 0 0 chr9 89405234 89405283 -28457344 + AT_rich Low_complexity Low_complexity 1 49 0 566 236 0 0 chr9 89405316 89405422 -28457205 - FLAM_C SINE Alu -35 108 3 2122 142 7 0 chr9 89405905 89406215 -28456412 - AluSx SINE Alu 0 312 1 363 324 17 17 chr9 89406313 89406492 -28456135 + GA-rich Low_complexity Low_complexity 2 180 0 1567 200 11 4 chr9 89406876 89407156 -28455471 + AluJo SINE Alu 1 282 -30 6433 88 22 17 chr9 89407182 89408117 -28454510 - L1MA3 LINE L1 -1 6304 5365 201 28 28 56 chr9 89408128 89408164 -28454463 + (CAAAAA)n Simple_repeat Simple_repeat 1 35 0 436 311 113 13 chr9 89408685 89408923 -28453704 - MIR SINE MIR 0 262 1 305 328 9 26 chr9 89409074 89409190 -28453437 - MER5A DNA MER1_type -12 177 64 182 292 46 15 chr9 89409499 89409564 -28453063 - MIR SINE MIR -56 152 86 258 351 0 0 chr9 89410135 89410209 -28452418 - L2 LINE L2 -18 3254 3181 2157 134 0 10 chr9 89410504 89410809 -28451818 + AluSx SINE Alu 1 302 -10 444 239 78 64 chr9 89411986 89412204 -28450423 + MLT1K LTR MaLR 368 588 0 611 159 132 93 chr9 89412634 89412816 -28449811 + MER5A DNA MER1_type 1 189 0 982 211 9 9 chr9 89412918 89413131 -28449496 + MIR SINE MIR 47 259 -3 187 289 96 19 chr9 89413248 89413352 -28449275 + L2 LINE L2 2980 3091 -181 844 250 5 0 chr9 89413384 89413584 -28449043 + MIR SINE MIR 56 256 -6 295 226 32 0 chr9 89413652 89413714 -28448913 - MER96B DNA MER1_type? 0 417 354 266 172 190 0 chr9 89413761 89413819 -28448808 - MER58A DNA MER1_type -32 75 7 * 280 97 48 48 chr9 89413811 89413873 -28448754 + MER96B DNA MER1_type? 285 346 -71 599 275 0 0 chr9 89414575 89414706 -28447921 + L2 LINE L2 3136 3266 -6 453 272 98 12 chr9 89414765 89414938 -28447689 + MIR SINE MIR 48 235 -27 863 260 44 4 chr9 89415022 89415249 -28447378 + MLT1I LTR MaLR 58 293 -116 249 211 0 0 chr9 89415320 89415372 -28447255 + L2 LINE L2 3220 3271 -1 341 104 0 0 chr9 89415670 89415718 -28446909 - U5 snRNA snRNA -68 48 1 232 314 78 13 chr9 89415984 89416137 -28446490 - MIR SINE MIR -99 163 1 1941 122 0 0 chr9 89416883 89417145 -28445482 + AluSq SINE Alu 1 262 -51 270 0 0 0 chr9 89417294 89417324 -28445303 + (A)n Simple_repeat Simple_repeat 1 30 0 420 200 122 0 chr9 89417382 89417497 -28445130 - L2 LINE L2 -4 3309 3181 694 156 141 0 chr9 89417497 89417625 -28445002 - AluJb SINE Alu -12 300 155 26563 30 3 93 chr9 89417727 89421514 -28441113 + L1P LINE L1 1224 4668 -1478 5302 141 22 24 chr9 89521519 89521748 -28340879 + Tigger2 DNA MER2_type 1 229 -2489 2335 109 0 0 chr9 89521748 89522059 -28340568 - AluSq SINE Alu -2 311 1 5302 141 22 24 chr9 89522059 89522803 -28339824 + Tigger2 DNA MER2_type 229 972 -1746 244 88 0 0 chr9 89522805 89522839 -28339788 - MER58A DNA MER1_type -5 219 186 584 209 9 0 chr9 89522841 89522951 -28339676 - MER58A DNA MER1_type 0 122 12 776 126 0 17 chr9 89522989 89523108 -28339519 + FLAM_C SINE Alu 2 118 -25 2125 132 7 0 chr9 89523395 89523691 -28338936 + AluSx SINE Alu 1 298 -14 282 325 12 0 chr9 89523742 89523822 -28338805 + MIR SINE MIR 51 131 -131 1384 204 178 15 chr9 89523902 89524275 -28338352 + MLT2B1 LTR ERVL 43 490 -30 513 0 0 0 chr9 89524275 89524332 -28338295 + (CA)n Simple_repeat Simple_repeat 2 58 0 1384 204 178 15 chr9 89524332 89524369 -28338258 + MLT2B1 LTR ERVL 490 520 0 2200 91 21 3 chr9 89524548 89524835 -28337792 + AluSc SINE Alu 1 292 -17 1599 163 10 43 chr9 89525753 89526054 -28336573 - AluJb SINE Alu -17 295 5 239 305 133 0 chr9 89527137 89527242 -28335385 + MIR SINE MIR 25 143 -65 2138 121 6 13 chr9 89528066 89528379 -28334248 - AluSx SINE Alu 0 312 2 369 155 302 0 chr9 89528406 89528522 -28334105 - MER104 DNA Tc2 -12 168 18 508 279 149 13 chr9 89528956 89529110 -28333517 - MIR SINE MIR -75 187 13 2160 121 0 0 chr9 89529284 89529566 -28333061 + AluSx SINE Alu 20 301 -11 405 245 61 71 chr9 89529767 89530077 -28332550 - L1MC5 LINE L1 -46 7915 7609 198 103 0 0 chr9 89530671 89530700 -28331927 + (TATATG)n Simple_repeat Simple_repeat 5 33 0 2119 115 3 0 chr9 89530776 89531064 -28331563 - AluSq SINE Alu -24 289 1 275 305 200 48 chr9 89531122 89531332 -28331295 - L2 LINE L2 -1 3271 3030 2101 130 122 36 chr9 89532263 89532615 -28330012 + MSTA LTR MaLR 1 392 -36 2148 130 3 0 chr9 89532615 89532916 -28329711 - AluSg SINE Alu -8 302 1 2101 130 122 36 chr9 89532916 89532956 -28329671 + MSTA LTR MaLR 392 427 -1 2240 52 42 14 chr9 89534275 89534562 -28328065 - AluY SINE Alu -16 295 1 2323 179 40 13 chr9 89534710 89535179 -28327448 - L1PB4 LINE L1 0 6156 5675 8228 34 7 0 chr9 89535193 89536972 -28325655 - L1PA4 LINE L1 0 6155 4370 1329 155 18 5 chr9 89536972 89537236 -28325391 - L1PB4 LINE L1 -471 5685 5413 2957 130 18 52 chr9 89537899 89538470 -28324157 + L1MA9 LINE L1 5762 6312 0 326 327 101 52 chr9 89538483 89538731 -28323896 - L1MC/D LINE L1 -2245 5563 5304 2134 140 0 3 chr9 89539162 89539462 -28323165 - AluSx SINE Alu -13 299 1 509 309 121 46 chr9 89539506 89540341 -28322286 - L1MC/D LINE L1 -1335 4811 3902 559 316 93 16 chr9 89540454 89540675 -28321952 + MIR SINE MIR 3 235 -27 1566 154 42 74 chr9 89541263 89541575 -28321052 - AluJb SINE Alu -10 302 1 22 0 0 0 chr9 89542678 89542700 -28319927 + AT_rich Low_complexity Low_complexity 1 22 0 343 262 220 21 chr9 89543139 89543280 -28319347 + MIR3 SINE MIR 33 201 -7 199 246 105 18 chr9 89543490 89543547 -28319080 - L2 LINE L2 -10 3262 3201 1787 167 0 24 chr9 89543553 89543846 -28318781 - AluJo SINE Alu -26 286 1 2103 129 14 0 chr9 89544178 89544472 -28318155 + AluSx SINE Alu 1 298 -14 243 211 77 0 chr9 89544961 89545013 -28317614 + MIR3 SINE MIR 110 165 -43 21 0 0 0 chr9 89545931 89545952 -28316675 + AT_rich Low_complexity Low_complexity 1 21 0 646 168 0 0 chr9 89545971 89546078 -28316549 - U6 snRNA snRNA 0 107 1 186 368 0 0 chr9 89546610 89546667 -28315960 + L2 LINE L2 3006 3062 -251 193 254 16 127 chr9 89547356 89547482 -28315145 - L2 LINE L2 -2 3270 3159 699 316 81 54 chr9 89547841 89548357 -28314270 + L2 LINE L2 2225 2754 -560 413 194 39 47 chr9 89549714 89549843 -28312784 - MER94 DNA DNA 0 134 7 441 274 50 62 chr9 89550061 89550240 -28312387 - L2 LINE L2 0 3313 3137 2343 90 38 3 chr9 89550376 89550720 -28311907 - L1PA13 LINE L1 -3 6160 5805 2061 84 7 10 chr9 89550721 89550747 -28311880 + L1P4 LINE L1 5466 5491 -670 2037 140 0 3 chr9 89550747 89551033 -28311594 + AluSq SINE Alu 1 309 0 217 0 0 0 chr9 89551033 89551057 -28311570 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 2061 84 7 10 chr9 89551057 89551337 -28311290 + L1P4 LINE L1 5491 5772 -389 225 0 0 0 chr9 89551845 89551870 -28310757 + (A)n Simple_repeat Simple_repeat 1 25 0 330 299 10 21 chr9 89552474 89552571 -28310056 + MER5A DNA MER1_type 4 99 -90 2862 134 25 25 chr9 89553939 89554462 -28308165 - L1MA9 LINE L1 -1 6311 5789 225 136 23 0 chr9 89554531 89554575 -28308052 - L1MA9 LINE L1 -389 5779 5735 182 275 25 62 chr9 89554694 89554774 -28307853 + L2 LINE L2 471 547 -2767 1853 37 0 0 chr9 89554831 89555072 -28307555 - L1P LINE L1 -846 5300 5060 1787 48 9 0 chr9 89555073 89555302 -28307325 + L1PA4 LINE L1 5925 6155 0 22 70 0 0 chr9 89555421 89555464 -28307163 + AT_rich Low_complexity Low_complexity 1 43 0 12735 184 72 39 chr9 89556863 89560865 -28301762 - L1P3 LINE L1 -2286 4562 2 205 358 37 9 chr9 89561036 89561145 -28301482 - MIR SINE MIR -123 139 28 2166 124 0 10 chr9 89561353 89561660 -28300967 - AluSx SINE Alu -8 304 1 404 162 0 58 chr9 89561807 89561924 -28300703 + MER5A DNA MER1_type 2 189 0 672 151 62 45 chr9 89564212 89564391 -28298236 - MER53 DNA DNA -6 183 2 306 231 13 13 chr9 89564411 89564489 -28298138 - MIR SINE MIR -112 150 73 381 288 118 13 chr9 89564792 89564945 -28297682 + MER5B DNA MER1_type 2 170 -8 329 158 0 18 chr9 89565007 89565064 -28297563 - MER5B DNA MER1_type -7 171 116 1934 148 3 3 chr9 89565067 89565364 -28297263 + AluSx SINE Alu 2 298 -14 236 174 0 0 chr9 89566334 89566380 -28296247 + L1M1 LINE L1 5783 5828 -476 234 156 0 0 chr9 89566407 89566452 -28296175 + (TA)n Simple_repeat Simple_repeat 2 46 0 305 270 0 22 chr9 89566452 89566541 -28296086 + L1MC4 LINE L1 6614 6700 -1342 234 229 0 0 chr9 89566543 89566613 -28296014 + (TA)n Simple_repeat Simple_repeat 1 70 0 302 159 58 14 chr9 89566621 89566690 -28295937 + L1MCa LINE L1 1996 2067 -4359 303 203 0 0 chr9 89566690 89566769 -28295858 + (TA)n Simple_repeat Simple_repeat 2 80 0 383 84 0 121 chr9 89566771 89566854 -28295773 - L1M2 LINE L1 -504 5787 5715 461 286 7 21 chr9 89567052 89567192 -28295435 - MER5B DNA MER1_type 0 178 41 1060 177 70 40 chr9 89567221 89567593 -28295034 - L1MC5 LINE L1 -58 7903 7521 2252 114 3 3 chr9 89567643 89567951 -28294676 - AluSq SINE Alu -5 308 1 192 296 0 0 chr9 89568057 89568101 -28294526 + MER5B DNA MER1_type 6 49 -129 1483 194 135 35 chr9 89568105 89568514 -28294113 + MLT2B1 LTR ERVL 11 472 -48 189 0 0 0 chr9 89568514 89568535 -28294092 + (TA)n Simple_repeat Simple_repeat 2 22 0 1483 194 135 35 chr9 89568535 89568590 -28294037 + MLT2B1 LTR ERVL 472 520 0 958 212 114 102 chr9 89568590 89569364 -28293263 - L1MC5 LINE L1 -435 7526 6744 198 298 0 0 chr9 89569367 89569414 -28293213 - MER5B DNA MER1_type -111 67 21 42036 38 7 1 chr9 89569779 89575879 -28286748 + L1PA4 LINE L1 14 6152 -3 1951 152 0 3 chr9 89575912 89576214 -28286413 - AluJb SINE Alu -11 301 1 2206 120 7 0 chr9 89576745 89577045 -28285582 - AluSq SINE Alu -9 304 3 39 68 0 0 chr9 89577903 89577977 -28284650 + AT_rich Low_complexity Low_complexity 1 74 0 23 54 0 0 chr9 89578525 89578562 -28284065 + AT_rich Low_complexity Low_complexity 1 37 0 313 306 47 36 chr9 89578614 89578807 -28283820 - L1M4 LINE L1 -1333 4813 4619 212 288 14 14 chr9 89579452 89579525 -28283102 - MIR SINE MIR -15 247 175 2510 78 0 0 chr9 89579811 89580117 -28282510 - AluSc SINE Alu -3 306 1 288 259 56 68 chr9 89580322 89580484 -28282143 - MIR SINE MIR -66 196 37 1918 168 0 3 chr9 89581257 89581561 -28281066 + AluJb SINE Alu 1 303 -9 254 296 0 25 chr9 89582157 89582238 -28280389 - MIR SINE MIR -4 258 180 1918 149 47 10 chr9 89585668 89585969 -28276658 + AluSx SINE Alu 1 312 0 352 318 26 26 chr9 89586385 89586536 -28276091 + L2 LINE L2 3163 3313 0 21 0 0 0 chr9 89586961 89586982 -28275645 + AT_rich Low_complexity Low_complexity 1 21 0 7650 18 5 0 chr9 89588904 89590078 -28272549 + L1PA3 LINE L1 4987 6164 0 329 333 16 23 chr9 89590425 89590554 -28272073 - MIR SINE MIR -101 161 34 476 248 121 0 chr9 89592214 89592363 -28270264 + L1MC4a LINE L1 39 205 -5914 883 270 84 58 chr9 89592447 89593312 -28269315 + L1MC4a LINE L1 489 1417 -4893 1284 181 14 0 chr9 89593312 89593527 -28269100 - MER20 DNA MER1_type 0 219 2 883 270 84 58 chr9 89593527 89593611 -28269016 + L1MC4a LINE L1 1417 1497 -4813 41157 31 21 1 chr9 89593617 89599641 -28262986 + L1HS LINE L1 1 6148 -7 303 113 0 0 chr9 89599651 89599704 -28262923 + (A)n Simple_repeat Simple_repeat 1 53 0 317 309 101 27 chr9 89599704 89599892 -28262735 + L1MC4a LINE L1 1490 1691 -4619 244 260 49 34 chr9 89600095 89600299 -28262328 + L1MC4a LINE L1 5050 5256 -873 363 352 32 16 chr9 89600501 89600920 -28261707 + L1MC4a LINE L1 5464 5694 -459 25 0 0 0 chr9 89600933 89600958 -28261669 + AT_rich Low_complexity Low_complexity 1 25 0 2239 114 3 13 chr9 89601172 89601488 -28261139 - AluSq SINE Alu 0 313 1 304 311 86 0 chr9 89602330 89602481 -28260146 + L1ME4a LINE L1 5955 6118 -3 364 291 113 14 chr9 89602913 89603054 -28259573 - MIR SINE MIR -60 202 48 2031 120 37 17 chr9 89603541 89603840 -28258787 + AluSx SINE Alu 1 305 -7 270 0 0 0 chr9 89604914 89604944 -28257683 + (CA)n Simple_repeat Simple_repeat 2 31 0 1819 156 10 10 chr9 89605305 89605600 -28257027 + AluJb SINE Alu 4 298 -14 195 114 0 0 chr9 89606599 89606634 -28255993 + (T)n Simple_repeat Simple_repeat 1 35 0 325 326 105 9 chr9 89607531 89607875 -28254752 + L1ME4a LINE L1 5540 5916 -205 254 220 0 0 chr9 89609295 89609345 -28253282 + L2 LINE L2 3241 3290 -23 * 476 202 90 39 chr9 89609343 89609379 -28253248 - L2 LINE L2 0 3313 3280 2169 164 70 5 chr9 89609379 89609781 -28252846 + MSTA LTR MaLR 1 428 0 476 202 90 39 chr9 89609781 89609922 -28252705 - L2 LINE L2 -33 3280 3127 379 199 64 12 chr9 89610466 89610637 -28251990 + (TTATA)n Simple_repeat Simple_repeat 1 180 0 979 267 24 4 chr9 89610677 89610924 -28251703 + MIR SINE MIR 1 252 -10 361 318 73 7 chr9 89610928 89611079 -28251548 + MIR SINE MIR 53 213 -49 2592 46 0 0 chr9 89611130 89611433 -28251194 + AluY SINE Alu 1 303 -8 188 290 187 9 chr9 89611583 89611690 -28250937 - MIR SINE MIR -121 141 16 2367 102 0 3 chr9 89612186 89612500 -28250127 - AluSq SINE Alu 0 313 1 23 0 0 0 chr9 89613136 89613159 -28249468 + AT_rich Low_complexity Low_complexity 1 23 0 22 88 0 0 chr9 89613369 89613426 -28249201 + AT_rich Low_complexity Low_complexity 1 57 0 665 172 43 43 chr9 89614579 89614765 -28247862 - MER53 DNA DNA -1 188 3 282 29 0 0 chr9 89615209 89615244 -28247383 + (A)n Simple_repeat Simple_repeat 1 35 0 464 316 38 21 chr9 89615513 89615836 -28246791 + HAL1b LINE L1 377 564 -784 1241 256 102 12 chr9 89616314 89616837 -28245790 - MLT2E LTR ERVL -7 621 1 846 193 0 7 chr9 89617062 89617212 -28245415 + FRAM SINE Alu 4 152 -24 22 0 0 0 chr9 89617252 89617274 -28245353 + AT_rich Low_complexity Low_complexity 1 22 0 679 165 82 24 chr9 89617465 89617635 -28244992 + MER104 DNA MER2_type 1 180 0 2620 61 0 0 chr9 89617943 89618254 -28244373 - AluY SINE Alu 0 311 1 485 125 71 18 chr9 89620307 89620475 -28242152 + CT-rich Low_complexity Low_complexity 2 178 0 234 0 0 0 chr9 89620802 89620828 -28241799 + (TTG)n Simple_repeat Simple_repeat 2 27 0 629 154 228 19 chr9 89620973 89621135 -28241492 - L1MA9 LINE L1 -35 6277 6082 216 216 0 0 chr9 89621517 89621568 -28241059 + (TATATG)n Simple_repeat Simple_repeat 2 52 0 2070 133 3 3 chr9 89623264 89623564 -28239063 - AluSx SINE Alu -8 304 5 1065 249 112 60 chr9 89624136 89624798 -28237829 + L1ME4a LINE L1 5338 6033 -88 347 318 40 17 chr9 89626291 89626464 -28236163 - MER5B DNA MER1_type 0 178 2 978 188 12 6 chr9 89627457 89627627 -28235000 - MER5A DNA MER1_type 0 189 19 236 299 183 0 chr9 89627651 89627788 -28234839 - MER91A DNA MER1_type -6 190 29 372 218 58 11 chr9 89628466 89628553 -28234074 + MIR SINE MIR 59 149 -113 3501 124 11 2 chr9 89628844 89629375 -28233252 - L1PA16 LINE L1 -9 6157 5622 2287 148 18 0 chr9 89629378 89629913 -28232714 + L1P4 LINE L1 4925 5468 -698 1078 118 52 9 chr9 89629913 89630124 -28232503 - AluSc SINE Alu -2 307 88 373 363 45 16 chr9 89630383 89630628 -28231999 + HAL1b LINE L1 334 585 -763 1265 156 114 59 chr9 89630643 89630778 -28231849 + AluJo SINE Alu 3 129 -183 2144 126 0 13 chr9 89630778 89631087 -28231540 + AluSx SINE Alu 1 305 -7 1265 156 114 59 chr9 89631087 89631240 -28231387 + AluJo SINE Alu 129 307 -5 2158 116 3 0 chr9 89631604 89631898 -28230729 + AluSx SINE Alu 1 295 -17 430 240 91 0 chr9 89631944 89632065 -28230562 - FLAM_A SINE Alu -1 132 1 272 355 57 7 chr9 89632229 89632370 -28230257 + L2 LINE L2 2594 2741 -573 432 259 86 49 chr9 89632559 89632721 -28229906 + MIR SINE MIR 87 254 -8 396 333 109 11 chr9 89633233 89633416 -28229211 + MIR3 SINE MIR 5 205 -3 27 0 0 0 chr9 89633481 89633508 -28229119 + AT_rich Low_complexity Low_complexity 1 27 0 252 267 128 12 chr9 89634340 89634426 -28228201 - MER91C DNA MER1_type -24 116 21 1026 179 81 15 chr9 89636850 89637187 -28225440 + L1MD1 LINE L1 2407 2803 -3890 * 5905 214 56 37 chr9 89637162 89638181 -28224446 + L1MD1 LINE L1 3372 4370 -2266 1733 180 3 0 chr9 89638181 89638464 -28224163 - AluJb SINE Alu -17 295 12 5905 214 56 37 chr9 89638464 89639233 -28223394 + L1MD1 LINE L1 4370 5122 -1514 804 57 0 65 chr9 89639233 89639356 -28223271 - L1PA8 LINE L1 0 6172 6058 5905 214 56 37 chr9 89639356 89640763 -28221864 + L1MD1 LINE L1 5122 6636 0 394 316 90 10 chr9 89640862 89641150 -28221477 - L1MC/D LINE L1 -2154 5654 5344 2467 102 5 42 chr9 89641158 89641542 -28221085 - L1PB3 LINE L1 -3 6151 5782 308 289 0 0 chr9 89641543 89641633 -28220994 + L1MC4 LINE L1 6614 6703 -1339 6743 173 25 41 chr9 89641642 89643774 -28218853 - L1P5 LINE L1 -363 5791 3697 1911 175 0 0 chr9 89643989 89644297 -28218330 - AluJb SINE Alu -2 310 3 2641 108 8 3 chr9 89644782 89645152 -28217475 + THE1C LTR MaLR 4 375 0 233 325 62 98 chr9 89645588 89646006 -28216621 - L2 LINE L2 -1 3271 2869 720 234 102 30 chr9 89646153 89646350 -28216277 - MER20 DNA MER1_type 0 219 9 2391 134 9 0 chr9 89646350 89646686 -28215941 - MER1B DNA MER1_type 0 339 1 409 282 135 0 chr9 89646731 89646901 -28215726 - MIR SINE MIR -21 241 49 189 264 208 0 chr9 89647082 89647154 -28215473 + L2 LINE L2 3180 3266 -6 549 152 0 0 chr9 89647485 89647577 -28215050 - L1PA13 LINE L1 -4 6159 6068 2130 128 0 13 chr9 89648457 89648769 -28213858 + AluSg SINE Alu 1 308 -2 235 345 9 36 chr9 89648864 89648974 -28213653 - L2 LINE L2 -24 3248 3142 245 362 36 41 chr9 89649141 89649362 -28213265 - L2 LINE L2 -377 2937 2718 1596 214 10 44 chr9 89651454 89651520 -28211107 - MLT1A2 LTR MaLR 0 374 307 2327 87 0 19 chr9 89651520 89651829 -28210798 + AluSq SINE Alu 1 303 -10 1596 214 10 44 chr9 89651829 89652149 -28210478 - MLT1A2 LTR MaLR -67 307 1 523 282 40 44 chr9 89652365 89652664 -28209963 + L1ME4a LINE L1 5481 5774 -347 1948 148 0 55 chr9 89652717 89653042 -28209585 + AluSx SINE Alu 3 309 -3 343 262 178 37 chr9 89653113 89653304 -28209323 + L1ME4a LINE L1 5895 6112 -9 1108 133 11 0 chr9 89653396 89653577 -28209050 + L1PB2 LINE L1 5969 6151 0 5456 171 67 3 chr9 89654084 89655151 -28207476 - L1P LINE L1 -1227 4919 3785 199 329 38 0 chr9 89655151 89655230 -28207397 + MIR SINE MIR 65 146 -116 716 246 195 23 chr9 89655241 89655497 -28207130 + Charlie2 DNA MER1_type 42 341 -2521 1039 38 8 0 chr9 89655528 89655659 -28206968 - L1PA5 LINE L1 0 6154 6023 420 91 30 0 chr9 89655681 89655747 -28206880 - L1MB1 LINE L1 -71 6097 6030 2815 227 105 11 chr9 89655752 89656717 -28205910 + Charlie2 DNA MER1_type 1805 2859 -3 568 149 0 21 chr9 89657794 89657888 -28204739 - U6 snRNA snRNA -15 92 1 23 33 0 0 chr9 89657939 89657969 -28204658 + AT_rich Low_complexity Low_complexity 1 30 0 822 266 105 0 chr9 89657979 89658208 -28204419 + MIR SINE MIR 10 262 0 270 81 0 0 chr9 89658231 89658268 -28204359 + (CAT)n Simple_repeat Simple_repeat 3 39 0 250 312 13 13 chr9 89659126 89659203 -28203424 + MIR SINE MIR 20 96 -112 317 226 21 43 chr9 89659819 89659912 -28202715 - L1MC4 LINE L1 -1338 6704 6614 586 188 12 0 chr9 89659913 89660083 -28202544 + (TA)n Simple_repeat Simple_repeat 1 172 0 329 238 79 20 chr9 89660089 89660190 -28202437 - MIR SINE MIR -105 157 51 473 274 32 25 chr9 89660318 89660475 -28202152 + MIR3 SINE MIR 30 187 -21 22 0 0 0 chr9 89660665 89660687 -28201940 + AT_rich Low_complexity Low_complexity 1 22 0 297 364 8 33 chr9 89660727 89660848 -28201779 + L2 LINE L2 3151 3268 -4 458 66 0 0 chr9 89660860 89660921 -28201706 - L1P LINE L1 -748 5406 5346 1235 46 0 0 chr9 89660921 89661067 -28201560 + L1PA5 LINE L1 6000 6151 -3 34 0 0 0 chr9 89661067 89661101 -28201526 + AT_rich Low_complexity Low_complexity 1 34 0 241 294 11 43 chr9 89662178 89662270 -28200357 + GA-rich Low_complexity Low_complexity 1 89 0 4885 141 14 6 chr9 89662726 89663558 -28199069 - L1MA5 LINE L1 -5 6295 5457 966 253 56 75 chr9 89663811 89664187 -28198440 + MLT1H LTR MaLR 181 549 0 1115 174 0 78 chr9 89665456 89665698 -28196929 + AluJb SINE Alu 85 307 -5 199 356 50 38 chr9 89666264 89666424 -28196203 - MIR SINE MIR -12 250 89 23 54 0 0 chr9 89666425 89666462 -28196165 + AT_rich Low_complexity Low_complexity 1 37 0 645 271 4 119 chr9 89666463 89666740 -28195887 - MIR SINE MIR 0 262 18 808 143 0 0 chr9 89666939 89667051 -28195576 + FLAM_C SINE Alu 7 118 -25 21 0 0 0 chr9 89667051 89667072 -28195555 + AT_rich Low_complexity Low_complexity 1 21 0 45 34 0 0 chr9 89667323 89667382 -28195245 + AT_rich Low_complexity Low_complexity 1 59 0 208 234 12 41 chr9 89668747 89668919 -28193708 + CT-rich Low_complexity Low_complexity 1 166 0 328 237 41 10 chr9 89668973 89669070 -28193557 - L2 LINE L2 -1457 1857 1758 417 289 171 11 chr9 89669083 89669270 -28193357 - L2 LINE L2 -2359 955 739 1377 60 0 0 chr9 89669270 89669453 -28193174 - L1P LINE L1 -930 5216 5034 3424 70 0 2 chr9 89669453 89669892 -28192735 + L1PA7 LINE L1 5712 6152 -2 743 281 276 13 chr9 89669901 89670452 -28192175 - L2 LINE L2 -2563 751 56 439 293 35 78 chr9 89671051 89671307 -28191320 - MLT1J LTR MaLR -40 471 227 2206 83 0 21 chr9 89671355 89671644 -28190983 + AluY SINE Alu 4 286 -25 371 39 39 0 chr9 89671647 89671699 -28190928 + (TAAAA)n Simple_repeat Simple_repeat 2 55 0 235 195 0 0 chr9 89671817 89671858 -28190769 - MLT1L LTR MaLR -574 41 1 22 56 0 0 chr9 89673244 89673280 -28189347 + AT_rich Low_complexity Low_complexity 1 36 0 1944 138 7 7 chr9 89673310 89673608 -28189019 + AluSg SINE Alu 1 298 -12 449 341 103 39 chr9 89673659 89674467 -28188160 + L1M4 LINE L1 3626 4495 -1651 335 186 54 8 chr9 89674516 89674645 -28187982 + (TA)n Simple_repeat Simple_repeat 1 135 0 611 166 215 6 chr9 89675353 89675516 -28187111 + MIR SINE MIR 63 259 -3 353 338 82 32 chr9 89677074 89677477 -28185150 + HAL1 LINE L1 1218 1640 -867 523 326 127 55 chr9 89677899 89678332 -28184295 - L2 LINE L2 0 3272 2809 2059 155 56 29 chr9 89678739 89679278 -28183349 - MLT2A2 LTR ERVL 0 554 1 1366 161 0 14 chr9 89680014 89680237 -28182390 - MLT1D LTR MaLR -285 220 1 606 341 33 33 chr9 89680389 89680755 -28181872 - L2 LINE L2 -1945 1369 1004 292 287 20 10 chr9 89680774 89680875 -28181752 - L1ME LINE L1 -411 5710 5609 211 244 25 87 chr9 89681339 89681455 -28181172 - MER5B DNA MER1_type -69 120 4 1849 117 0 0 chr9 89681544 89681800 -28180827 - AluSq SINE Alu -2 311 56 282 206 0 0 chr9 89683063 89683126 -28179501 + (CA)n Simple_repeat Simple_repeat 2 64 0 379 300 96 54 chr9 89683210 89683678 -28178949 - L1ME3A LINE L1 -192 5970 5444 642 257 124 10 chr9 89683696 89683898 -28178729 + MIR SINE MIR 1 225 -37 203 125 25 0 chr9 89684378 89684418 -28178209 + (TAA)n Simple_repeat Simple_repeat 1 41 0 331 243 75 37 chr9 89684450 89684557 -28178070 - MIR SINE MIR -35 227 117 486 250 83 0 chr9 89684842 89684998 -28177629 + L2 LINE L2 1600 1768 -1546 436 313 115 16 chr9 89685620 89685802 -28176825 - MIR SINE MIR -43 219 20 1246 159 220 10 chr9 89686761 89687070 -28175557 - MLT1A2 LTR MaLR 0 374 1 1611 209 38 87 chr9 89687902 89688364 -28174263 + MLT1D LTR MaLR 1 436 -69 2037 104 7 4 chr9 89688364 89688680 -28173947 - AluSg SINE Alu 0 317 1 1611 209 38 87 chr9 89688680 89688747 -28173880 + MLT1D LTR MaLR 436 505 0 22 56 0 0 chr9 89689786 89689822 -28172805 + AT_rich Low_complexity Low_complexity 1 36 0 232 344 47 21 chr9 89689863 89690055 -28172572 - HAL1b LINE L1 -604 744 548 243 0 0 0 chr9 89690514 89690541 -28172086 + (CA)n Simple_repeat Simple_repeat 1 27 0 26 0 0 0 chr9 89690945 89690971 -28171656 + AT_rich Low_complexity Low_complexity 1 26 0 1657 211 44 7 chr9 89691530 89691943 -28170684 + L1MA4 LINE L1 5873 6300 0 2686 101 0 6 chr9 89692488 89692854 -28169773 + THE1B LTR MaLR 1 364 0 780 348 126 29 chr9 89692917 89693248 -28169379 + L2 LINE L2 1618 1915 -1399 1790 143 3 55 chr9 89693248 89693555 -28169072 - AluJo SINE Alu -21 291 1 780 348 126 29 chr9 89693555 89694160 -28168467 + L2 LINE L2 1915 2645 -669 406 306 110 32 chr9 89694196 89694415 -28168212 + MIR SINE MIR 6 241 -21 2168 102 7 0 chr9 89694880 89695163 -28167464 + AluSp SINE Alu 1 285 -28 192 40 0 0 chr9 89695163 89695188 -28167439 + (GA)n Simple_repeat Simple_repeat 2 26 0 2089 125 11 0 chr9 89695192 89695479 -28167148 + AluSx SINE Alu 3 292 -20 355 231 8 8 chr9 89695479 89695609 -28167018 + GA-rich Low_complexity Low_complexity 1 130 0 305 313 52 22 chr9 89696005 89696139 -28166488 - L2 LINE L2 -2 3311 3174 238 297 0 44 chr9 89696341 89696432 -28166195 + MIR SINE MIR 67 153 -109 6671 70 29 0 chr9 89696530 89697636 -28164991 - L1PA10 LINE L1 -3 6165 5047 2241 97 7 3 chr9 89699307 89699596 -28163031 + AluSx SINE Alu 1 290 -22 1801 166 7 0 chr9 89700122 89700433 -28162194 + AluSx SINE Alu 1 313 0 1457 198 58 24 chr9 89701211 89701504 -28161123 + AluJo SINE Alu 1 303 -9 21 0 0 0 chr9 89701990 89702011 -28160616 + AT_rich Low_complexity Low_complexity 1 21 0 2285 97 7 7 chr9 89702915 89703225 -28159402 + AluSg SINE Alu 1 310 0 217 156 47 62 chr9 89703325 89703389 -28159238 - MIR SINE MIR -8 254 192 1184 241 169 37 chr9 89703706 89704437 -28158190 - L2 LINE L2 0 3313 2466 2610 269 193 34 chr9 89704437 89705730 -28156897 - L2 LINE L2 -1816 1498 1 23 0 0 0 chr9 89706112 89706135 -28156492 + AT_rich Low_complexity Low_complexity 1 23 0 1160 138 0 0 chr9 89706433 89706593 -28156034 + FRAM SINE Alu 1 160 -16 879 274 14 5 chr9 89706624 89706832 -28155795 + MIR SINE MIR 7 216 -46 22 0 0 0 chr9 89706954 89706976 -28155651 + AT_rich Low_complexity Low_complexity 1 22 0 295 126 18 54 chr9 89707069 89707180 -28155447 + (TA)n Simple_repeat Simple_repeat 1 107 0 303 292 39 6 chr9 89707223 89707400 -28155227 - L1ME LINE L1 -239 5882 5692 2115 123 3 0 chr9 89707833 89708126 -28154501 + AluSq SINE Alu 1 294 -19 415 265 122 20 chr9 89708127 89708323 -28154304 + L1ME4a LINE L1 5427 5642 -2166 331 202 83 0 chr9 89708363 89708458 -28154169 + HsTC2 DNA Tc2 1 1893 -5 337 286 53 94 chr9 89708478 89708838 -28153789 + L1ME4a LINE L1 5725 6069 -52 264 156 0 0 chr9 89709133 89709178 -28153449 - Tigger2 DNA MER2_type -2673 45 1 * 632 221 34 0 chr9 89709178 89709326 -28153301 - Tigger3(Golem) DNA MER2_type -2744 285 133 786 137 10 142 chr9 89709692 89709897 -28152730 + AluJb SINE Alu 134 311 -1 2346 90 0 0 chr9 89710103 89710391 -28152236 - AluSg SINE Alu -22 288 1 1737 181 10 19 chr9 89711094 89711404 -28151223 - AluJb SINE Alu -5 307 1 893 202 12 6 chr9 89711878 89712051 -28150576 - MER5A DNA MER1_type 0 189 16 359 273 0 0 chr9 89712128 89712205 -28150422 - MER5A DNA MER1_type -77 112 36 2243 121 0 13 chr9 89712267 89712580 -28150047 - AluSx SINE Alu -3 309 1 300 257 0 55 chr9 89712648 89712757 -28149870 + T-rich Low_complexity Low_complexity 4 106 0 191 36 36 0 chr9 89712823 89712851 -28149776 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 1009 162 141 0 chr9 89713704 89713895 -28148732 + MER20 DNA MER1_type 2 219 0 7544 27 5 0 chr9 89714111 89715135 -28147492 + L1PA4 LINE L1 5123 6150 -5 397 82 0 41 chr9 89715135 89715151 -28147476 - L1MA4A LINE L1 -1 6302 6287 2228 108 44 33 chr9 89715151 89715511 -28147116 - THE1B LTR MaLR 0 364 1 397 82 0 41 chr9 89715511 89715567 -28147060 - L1MA4A LINE L1 -16 6287 6233 519 203 149 7 chr9 89715834 89715982 -28146645 + MER58C DNA MER1_type 47 215 0 536 307 73 40 chr9 89717432 89717658 -28144969 + L2 LINE L2 2997 3237 -76 216 0 0 0 chr9 89717658 89717682 -28144945 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 536 307 73 40 chr9 89717682 89717758 -28144869 + L2 LINE L2 3237 3309 -4 2375 138 6 3 chr9 89718077 89718440 -28144187 - THE1B LTR MaLR 0 364 1 225 315 22 22 chr9 89718484 89718576 -28144051 + MLT1L LTR MaLR 140 231 -384 654 272 56 6 chr9 89718624 89718804 -28143823 + MIR SINE MIR 12 200 -62 818 180 6 44 chr9 89718914 89719097 -28143530 + AluJb SINE Alu 137 312 0 865 141 0 15 chr9 89719771 89719906 -28142721 + FLAM_C SINE Alu 1 133 0 1873 164 59 53 chr9 89720564 89720825 -28141802 - L1MA10 LINE L1 -2 6332 6065 1876 128 51 45 chr9 89720825 89721160 -28141467 - MER1B DNA MER1_type 0 337 1 1873 164 59 53 chr9 89721160 89721391 -28141236 - L1MA10 LINE L1 -269 6065 5837 743 172 8 8 chr9 89721959 89722093 -28140534 + AluSq/x SINE Alu 1 134 -178 2100 125 6 27 chr9 89722385 89722722 -28139905 + MER1B DNA MER1_type 1 330 -9 407 354 39 24 chr9 89723282 89723466 -28139161 + HAL1 LINE L1 1597 1786 -721 1087 214 28 0 chr9 89723466 89723681 -28138946 - MER58A DNA MER1_type 0 224 4 407 354 39 24 chr9 89723681 89723702 -28138925 + HAL1 LINE L1 1786 1805 -702 233 349 77 18 chr9 89723713 89723882 -28138745 - L2 LINE L2 -339 2975 2797 328 310 114 6 chr9 89724328 89724486 -28138141 - LTR33A LTR ERVL -311 212 38 387 265 25 19 chr9 89725308 89725470 -28137157 - MER117 DNA MER1_type -34 163 1 2210 99 3 0 chr9 89725508 89725790 -28136837 - AluSp SINE Alu -30 283 1 261 335 161 19 chr9 89726141 89726296 -28136331 + MIR SINE MIR 66 242 -20 1256 166 14 29 chr9 89726413 89726691 -28135936 - L1MB8 LINE L1 -80 6098 5825 2192 122 0 0 chr9 89726692 89726988 -28135639 + AluSq SINE Alu 1 296 -17 1388 157 4 0 chr9 89726995 89727231 -28135396 - L1MB8 LINE L1 -475 5703 5467 315 0 0 0 chr9 89727339 89727374 -28135253 + (TG)n Simple_repeat Simple_repeat 1 35 0 2478 49 3 13 chr9 89728496 89728801 -28133826 + AluY SINE Alu 1 302 -9 532 269 55 40 chr9 89728857 89729110 -28133517 + MIR SINE MIR 2 258 -4 1897 137 0 57 chr9 89729169 89729483 -28133144 - AluSx SINE Alu -14 298 3 330 311 60 33 chr9 89729484 89729786 -28132841 + L1MC/D LINE L1 5511 5820 -1988 28 0 0 0 chr9 89729929 89729957 -28132670 + AT_rich Low_complexity Low_complexity 1 28 0 590 276 231 53 chr9 89730214 89730703 -28131924 + MLT1K LTR MaLR 13 588 0 233 309 140 37 chr9 89730723 89730966 -28131661 + L2 LINE L2 1753 2020 -1294 240 86 0 0 chr9 89731470 89731505 -28131122 + (TGAA)n Simple_repeat Simple_repeat 4 38 0 22 0 0 0 chr9 89732759 89732781 -28129846 + AT_rich Low_complexity Low_complexity 1 22 0 280 298 35 26 chr9 89733228 89733342 -28129285 + L3 LINE CR1 1385 1499 -78 2293 129 11 3 chr9 89733766 89734115 -28128512 - THE1B LTR MaLR 0 364 13 361 344 113 11 chr9 89734710 89734896 -28127731 + MIR SINE MIR 31 235 -27 423 114 23 61 chr9 89735431 89735563 -28127064 - MER96B DNA MER1_type? -239 178 52 2322 74 0 7 chr9 89735564 89735860 -28126767 - AluY SINE Alu -17 294 1 466 286 56 15 chr9 89735939 89736135 -28126492 - MER68 LTR ERV1 -30 532 329 1176 206 14 0 chr9 89737303 89737522 -28125105 + MER58A DNA MER1_type 2 223 -1 21 0 0 0 chr9 89737973 89737994 -28124633 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr9 89738060 89738094 -28124533 + AT_rich Low_complexity Low_complexity 1 34 0 1927 131 0 56 chr9 89738099 89738419 -28124208 + AluSx SINE Alu 1 302 -10 1239 163 0 30 chr9 89738502 89738705 -28123922 + AluJb SINE Alu 1 197 -115 2195 92 41 3 chr9 89738917 89739211 -28123416 + AluSq SINE Alu 1 305 -8 351 109 0 0 chr9 89739528 89739583 -28123044 - MER4A LTR ERV1 0 664 610 2613 45 0 0 chr9 89739584 89739895 -28122732 + AluY SINE Alu 1 311 0 1448 142 10 24 chr9 89739912 89740223 -28122404 - MER4A LTR ERV1 -39 625 261 674 81 0 10 chr9 89740223 89740322 -28122305 - MER4A LTR ERV1 -566 98 1 7791 93 52 39 chr9 89740330 89740592 -28122035 - MER4A-int LTR ERV1 -2 6596 6339 2133 138 3 0 chr9 89740592 89740897 -28121730 - AluSq SINE Alu -7 306 1 7791 93 52 39 chr9 89740897 89741110 -28121517 - MER4A-int LTR ERV1 -259 6339 6130 2137 110 10 26 chr9 89741110 89741418 -28121209 + AluSq SINE Alu 1 303 -10 7791 93 52 39 chr9 89741418 89742289 -28120338 - MER4A-int LTR ERV1 -468 6130 5231 669 164 0 0 chr9 89742316 89742420 -28120207 + AluSp/q SINE Alu 190 293 -20 584 97 4 68 chr9 89742443 89742696 -28119931 + (TA)n Simple_repeat Simple_repeat 1 236 0 304 250 0 54 chr9 89742699 89742791 -28119836 + L1MC4 LINE L1 6617 6703 -1339 1917 88 29 12 chr9 89742791 89743131 -28119496 - MER4-int LTR ERV1 -3516 3082 2737 1262 157 72 0 chr9 89743131 89743367 -28119260 + LTR8 LTR ERV1 1 253 -438 4314 66 52 10 chr9 89743367 89744063 -28118564 - MER4A-int LTR ERV1 -4110 2488 1764 278 50 25 0 chr9 89744083 89744123 -28118504 + (CA)n Simple_repeat Simple_repeat 2 42 0 925 96 10 36 chr9 89744133 89744353 -28118274 - MER4A-int LTR ERV1 -5775 983 713 2893 138 84 35 chr9 89744432 89744680 -28117947 - MER4A-int LTR ERV1 -6002 756 521 2129 137 0 0 chr9 89744680 89744986 -28117641 + AluSx SINE Alu 1 306 -6 2893 138 84 35 chr9 89744986 89745274 -28117353 - MER4A-int LTR ERV1 -6237 521 194 1336 250 65 6 chr9 89745281 89745633 -28116994 - MER4A-int LTR ERV1 -4107 2224 1852 302 132 8 124 chr9 89745681 89745802 -28116825 - MER4A-int LTR ERV1 -5765 833 727 2231 115 248 2 chr9 89745852 89746304 -28116323 - MER4A-int LTR ERV1 -6035 563 1 1803 134 9 22 chr9 89746306 89746656 -28115971 - MER4A LTR ERV1 0 664 261 508 128 10 49 chr9 89746656 89746758 -28115869 - MER4A LTR ERV1 -566 98 1 1728 174 7 42 chr9 89747063 89747373 -28115254 + AluJo SINE Alu 1 299 -13 347 163 276 0 chr9 89747642 89747740 -28114887 + L2 LINE L2 3189 3313 0 204 306 126 27 chr9 89747805 89747988 -28114639 - L2 LINE L2 -518 2796 2596 406 214 10 29 chr9 89748034 89748137 -28114490 + L1ME3A LINE L1 5456 5556 -608 1354 162 76 86 chr9 89748149 89748464 -28114163 + AluSx SINE Alu 1 312 0 629 135 18 0 chr9 89748464 89748575 -28114052 + GA-rich Low_complexity Low_complexity 2 114 0 1002 60 22 38 chr9 89748586 89748769 -28113858 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 552 208 238 50 chr9 89748790 89749088 -28113539 + L1ME3A LINE L1 5567 5920 -250 2198 134 0 0 chr9 89749145 89749450 -28113177 - AluSx SINE Alu -7 305 1 495 161 92 23 chr9 89750178 89750308 -28112319 - MER104 DNA Tc2 -35 145 7 2013 137 7 0 chr9 89751242 89751534 -28111093 - AluSx SINE Alu -18 294 1 961 141 0 0 chr9 89751880 89752015 -28110612 + AluJb SINE Alu 1 135 -177 1794 177 0 35 chr9 89752015 89752357 -28110270 + AluJb SINE Alu 1 312 0 215 283 33 0 chr9 89752410 89752470 -28110157 - L2 LINE L2 -12 3301 3240 22 56 0 0 chr9 89752859 89752895 -28109732 + AT_rich Low_complexity Low_complexity 1 36 0 534 237 40 73 chr9 89752936 89753018 -28109609 - MIR SINE MIR -11 251 168 877 191 60 25 chr9 89753018 89753217 -28109410 + MER63A DNA MER1_type 2 207 -3 534 237 40 73 chr9 89753217 89753311 -28109316 - MIR SINE MIR -94 168 81 183 80 0 0 chr9 89753633 89753658 -28108969 + (TTTC)n Simple_repeat Simple_repeat 2 26 0 1990 148 0 10 chr9 89753680 89753984 -28108643 - AluJb SINE Alu -11 301 1 2519 81 0 0 chr9 89754025 89754334 -28108293 + AluSg SINE Alu 2 310 0 342 0 0 0 chr9 89754335 89754373 -28108254 + (TA)n Simple_repeat Simple_repeat 2 39 0 1835 148 7 4 chr9 89754701 89754979 -28107648 + AluJo SINE Alu 14 292 -20 1726 85 0 30 chr9 89754984 89755220 -28107407 + AluSq SINE Alu 84 312 -1 194 326 144 0 chr9 89755567 89755699 -28106928 - L2 LINE L2 0 3272 3122 192 277 119 40 chr9 89756097 89756198 -28106429 + MIR SINE MIR 21 129 -79 1989 154 0 7 chr9 89756260 89756566 -28106061 + AluSx SINE Alu 1 304 -8 2018 107 6 64 chr9 89756566 89756893 -28105734 + AluSq SINE Alu 1 308 -5 1987 156 17 0 chr9 89757271 89757573 -28105054 + AluJb SINE Alu 3 309 -3 1984 104 31 0 chr9 89757603 89757862 -28104765 + AluSx SINE Alu 6 272 -40 306 0 0 0 chr9 89757871 89757905 -28104722 + (GA)n Simple_repeat Simple_repeat 1 34 0 419 267 83 67 chr9 89758406 89758586 -28104041 - MIR SINE MIR -15 247 65 695 320 43 41 chr9 89758833 89759107 -28103520 - L2 LINE L2 0 3313 3036 3972 134 12 70 chr9 89759107 89759840 -28102787 + LTR8 LTR ERV1 1 691 0 695 320 43 41 chr9 89759840 89759980 -28102647 - L2 LINE L2 -277 3036 2898 2373 242 149 30 chr9 89760110 89760341 -28102286 - L2 LINE L2 -410 2904 2702 2148 124 7 3 chr9 89760341 89760648 -28101979 + AluSx SINE Alu 1 308 -4 2373 242 149 30 chr9 89760648 89760986 -28101641 - L2 LINE L2 -612 2702 2406 2168 136 0 0 chr9 89760986 89761288 -28101339 - AluSx SINE Alu -10 302 1 2373 242 149 30 chr9 89761288 89761621 -28101006 - L2 LINE L2 -908 2406 1893 534 172 14 139 chr9 89762137 89762222 -28100405 + L1MD3 LINE L1 7813 7907 -88 1954 152 0 3 chr9 89762222 89762518 -28100109 + AluJb SINE Alu 1 295 -17 534 172 14 139 chr9 89762518 89762594 -28100033 + L1MD3 LINE L1 7907 7945 -50 1913 123 10 52 chr9 89762594 89762902 -28099725 + AluSx SINE Alu 1 295 -17 534 172 14 139 chr9 89762902 89762948 -28099679 + L1MD3 LINE L1 7945 7995 0 191 284 49 12 chr9 89763010 89763091 -28099536 - L2 LINE L2 -189 3083 3000 851 188 58 0 chr9 89763161 89763315 -28099312 + FAM SINE Alu 1 163 -12 216 0 0 0 chr9 89764566 89764590 -28098037 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1761 159 10 45 chr9 89764596 89764910 -28097717 + AluJb SINE Alu 1 303 -9 475 319 28 11 chr9 89765003 89765185 -28097442 + MER5A DNA MER1_type 1 185 -4 234 0 0 0 chr9 89765788 89765814 -28096813 + (CA)n Simple_repeat Simple_repeat 1 26 0 1240 178 84 44 chr9 89765878 89766153 -28096474 - AluJb SINE Alu -14 288 3 421 157 0 0 chr9 89766158 89766228 -28096399 - AluSq/x SINE Alu -179 134 65 299 266 24 10 chr9 89766234 89766330 -28096297 - MIR SINE MIR -59 149 45 1945 145 3 20 chr9 89766686 89767027 -28095600 + AluJb SINE Alu 1 312 0 463 266 25 35 chr9 89767311 89767510 -28095117 + MER113 DNA MER1_type? 104 300 -221 205 306 0 0 chr9 89767511 89767560 -28095067 + polypyrimidine Low_complexity Low_complexity 2 50 0 410 187 22 11 chr9 89767565 89767656 -28094971 + MER113 DNA MER1_type? 313 404 -117 2199 108 7 7 chr9 89767656 89767961 -28094666 - AluSx SINE Alu -7 305 1 965 136 18 24 chr9 89767961 89768130 -28094497 - AluSg/x SINE Alu -8 302 135 521 109 22 11 chr9 89768156 89768248 -28094379 + L1MC2 LINE L1 6251 6343 -1 26 50 0 0 chr9 89768260 89768300 -28094327 + AT_rich Low_complexity Low_complexity 1 40 0 278 178 14 0 chr9 89768443 89768468 -28094159 + A-rich Low_complexity Low_complexity 3 26 -50 2312 108 23 0 chr9 89768468 89768774 -28093853 + AluSq SINE Alu 1 313 0 278 178 14 0 chr9 89768774 89768821 -28093806 + A-rich Low_complexity Low_complexity 26 76 0 3967 35 0 0 chr9 89769055 89769519 -28093108 - L1PA4 LINE L1 -3 6152 5689 457 114 0 23 chr9 89769709 89769838 -28092789 - MER53 DNA DNA 0 189 5 404 246 161 51 chr9 89770395 89770620 -28092007 + MIR SINE MIR 3 244 -18 1685 187 30 0 chr9 89770714 89771014 -28091613 - AluJb SINE Alu -3 309 1 401 61 0 0 chr9 89771119 89771168 -28091459 - Alu SINE Alu -251 60 12 1771 130 0 0 chr9 89771168 89771414 -28091213 + AluSx SINE Alu 57 302 -10 502 233 70 47 chr9 89773224 89773396 -28089231 + LTR16A1 LTR ERVL 67 242 -215 225 288 54 18 chr9 89773396 89773482 -28089145 + L2 LINE L2 2780 2872 -442 465 90 0 0 chr9 89773482 89773549 -28089078 + (CA)n Simple_repeat Simple_repeat 2 68 0 225 288 54 18 chr9 89773549 89773573 -28089054 + L2 LINE L2 2872 2894 -420 865 136 0 0 chr9 89773597 89773715 -28088912 + FLAM_C SINE Alu 1 118 -25 270 311 126 7 chr9 89773749 89773884 -28088743 + L2 LINE L2 2912 3062 -210 2084 137 0 3 chr9 89773977 89774290 -28088337 - AluSx SINE Alu 0 312 1 494 286 13 26 chr9 89774495 89774649 -28087978 + MIR SINE MIR 2 153 -109 294 228 152 0 chr9 89774650 89774742 -28087885 - HsTC2 DNA Tc2 0 1900 1795 677 245 103 98 chr9 89774750 89775146 -28087481 - HsTC2 DNA Tc2 -316 1584 31 2231 132 0 0 chr9 89775436 89775746 -28086881 - AluSx SINE Alu -2 310 1 374 277 50 8 chr9 89775845 89775964 -28086663 + L2 LINE L2 3188 3311 -2 684 281 45 21 chr9 89776522 89776764 -28085863 + MIR SINE MIR 2 249 -13 308 288 38 30 chr9 89777721 89777853 -28084774 - MLT1L LTR MaLR -4 611 479 686 153 0 17 chr9 89778022 89778140 -28084487 - FLAM_C SINE Alu -25 118 3 327 242 33 20 chr9 89778180 89778293 -28084334 - MLT1L LTR MaLR -305 283 168 2190 117 0 19 chr9 89778312 89778628 -28083999 - AluSx SINE Alu -2 310 1 321 47 0 0 chr9 89778669 89778712 -28083915 + (CA)n Simple_repeat Simple_repeat 2 44 0 361 301 63 85 chr9 89778953 89779103 -28083524 + LTR67 LTR ERVL 156 308 -249 759 174 25 85 chr9 89779103 89779167 -28083460 + MER53 DNA DNA 1 67 -122 1706 118 50 105 chr9 89779167 89779490 -28083137 - AluSx SINE Alu -7 305 1 759 174 25 85 chr9 89779490 89779626 -28083001 + MER53 DNA DNA 67 189 0 361 301 63 85 chr9 89779626 89779794 -28082833 + LTR67 LTR ERVL 308 467 -90 363 291 154 37 chr9 89781077 89781376 -28081251 + MLT1K LTR MaLR 254 587 -1 2264 119 0 7 chr9 89782252 89782554 -28080073 + AluSx SINE Alu 1 300 -12 582 301 90 12 chr9 89782884 89783206 -28079421 - L2 LINE L2 -372 2942 2596 1534 191 102 164 chr9 89783222 89783950 -28078677 - LTR8 LTR ERV1 -8 683 1 898 246 73 60 chr9 89784054 89784207 -28078420 + MLT1J LTR MaLR 3 152 -359 2277 103 0 0 chr9 89784207 89784498 -28078129 - AluSg SINE Alu -19 291 1 898 246 73 60 chr9 89784498 89784645 -28077982 + MLT1J LTR MaLR 152 307 -204 990 280 47 31 chr9 89784659 89784980 -28077647 + MLT1H LTR MaLR 5 330 -219 2266 114 0 3 chr9 89785029 89785335 -28077292 - AluSq SINE Alu -8 305 1 628 255 0 0 chr9 89785502 89785647 -28076980 - AluJb SINE Alu -8 304 160 1951 140 3 34 chr9 89786335 89786656 -28075971 + AluJb SINE Alu 1 311 -1 2494 66 0 0 chr9 89786845 89787148 -28075479 + AluY SINE Alu 1 303 -8 242 235 20 0 chr9 89787446 89787497 -28075130 + CT-rich Low_complexity Low_complexity 3 54 0 3347 161 82 81 chr9 89787575 89787640 -28074987 - L1MB7 LINE L1 -65 6119 6056 1625 72 17 191 chr9 89787640 89787985 -28074642 - AluYa5 SINE Alu -6 305 21 3347 161 82 81 chr9 89787985 89788836 -28073791 - L1MB7 LINE L1 -128 6056 5202 2144 121 3 22 chr9 89788836 89789150 -28073477 - AluSg SINE Alu -2 308 1 3347 161 82 81 chr9 89789150 89789590 -28073037 - L1MB7 LINE L1 -982 5202 4764 1824 171 46 155 chr9 89789643 89789951 -28072676 - L1MB7 LINE L1 -1366 4780 4440 1493 132 118 49 chr9 89789951 89790098 -28072529 - AluJb SINE Alu -2 310 175 2294 76 7 30 chr9 89790098 89790402 -28072225 - AluSx SINE Alu -15 297 1 1493 132 118 49 chr9 89790402 89790542 -28072085 - AluJb SINE Alu -137 175 3 1824 171 46 155 chr9 89790542 89790929 -28071698 - L1MB7 LINE L1 -1706 4440 4181 1877 119 0 26 chr9 89790929 89791198 -28071429 - AluSx SINE Alu -50 262 1 1824 171 46 155 chr9 89791198 89791303 -28071324 - L1MB7 LINE L1 -1965 4181 4066 2629 215 77 60 chr9 89791735 89792525 -28070102 - L1ME1 LINE L1 -5 6161 5358 661 134 98 0 chr9 89792525 89792637 -28069990 - AluSc SINE Alu -15 294 172 604 235 15 73 chr9 89792637 89792897 -28069730 - L1ME1 LINE L1 -780 5366 5122 465 111 61 101 chr9 89792910 89793009 -28069618 - MER50 LTR ERV1 0 734 640 730 256 121 47 chr9 89793039 89793445 -28069182 - MER50 LTR ERV1 -298 436 1 791 137 29 0 chr9 89793537 89793676 -28068951 - L1MA8 LINE L1 -4 6287 6145 466 248 0 0 chr9 89793680 89793789 -28068838 - L1ME1 LINE L1 -1005 5141 5033 268 234 39 13 chr9 89794432 89794509 -28068118 + MIR SINE MIR 105 183 -79 338 272 44 35 chr9 89794735 89794849 -28067778 - MER5A DNA MER1_type -9 180 66 260 269 55 48 chr9 89794754 89794899 -28067728 + MER5A DNA MER1_type 43 188 -1 * 319 308 77 15 chr9 89795208 89795478 -28067149 + MLT1K LTR MaLR 240 588 0 678 287 49 14 chr9 89795810 89796033 -28066594 - MIR SINE MIR -4 258 28 446 274 79 32 chr9 89796949 89797139 -28065488 - MIR SINE MIR 0 262 64 31 76 0 0 chr9 89797688 89797754 -28064873 + GC_rich Low_complexity Low_complexity 1 66 0 234 229 0 33 chr9 89798939 89799000 -28063627 + L2 LINE L2 3248 3306 -7 2030 126 7 10 chr9 89799783 89800077 -28062550 - AluSq SINE Alu -20 293 1 207 224 26 13 chr9 89801137 89801213 -28061414 + (TTTG)n Simple_repeat Simple_repeat 2 78 0 1889 121 8 0 chr9 89801408 89801673 -28060954 + AluSq SINE Alu 38 304 -9 2284 116 0 0 chr9 89802070 89802372 -28060255 - AluSg SINE Alu -8 302 1 243 0 0 0 chr9 89802702 89802729 -28059898 + (T)n Simple_repeat Simple_repeat 1 27 0 22 35 0 0 chr9 89802805 89802834 -28059793 + AT_rich Low_complexity Low_complexity 1 29 0 623 269 148 9 chr9 89804019 89804235 -28058392 - MIR SINE MIR -5 257 12 204 239 164 0 chr9 89804421 89804488 -28058139 + MIR SINE MIR 46 123 -85 249 307 213 24 chr9 89804664 89804951 -28057676 + L2 LINE L2 2925 3265 -7 2136 82 38 51 chr9 89805156 89805476 -28057151 - AluSx SINE Alu 0 316 1 440 279 14 14 chr9 89805482 89805629 -28056998 - MIR SINE MIR -14 248 102 5849 136 92 56 chr9 89805699 89806887 -28055740 - Tigger3b DNA MER2_type 0 1231 2 2173 123 0 0 chr9 89806975 89807275 -28055352 - AluSx SINE Alu -12 300 1 206 281 67 45 chr9 89808136 89808225 -28054402 - MER5B DNA MER1_type -81 97 7 1786 142 8 0 chr9 89808236 89808496 -28054131 - AluSx SINE Alu -13 299 38 939 150 0 0 chr9 89808523 89808656 -28053971 + AluJ SINE Alu 1 133 -169 333 0 0 0 chr9 89808660 89808697 -28053930 + (TA)n Simple_repeat Simple_repeat 2 38 0 1246 73 85 0 chr9 89809021 89809186 -28053441 + L1P LINE L1 14 192 -5954 957 154 0 25 chr9 89809293 89809455 -28053172 + AluJ SINE Alu 130 287 -25 226 233 0 0 chr9 89810505 89810565 -28052062 + LTR66 LTR ERVL 380 439 -171 25 31 0 0 chr9 89810763 89810795 -28051832 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr9 89810958 89810987 -28051640 + AT_rich Low_complexity Low_complexity 1 29 0 695 248 114 0 chr9 89811397 89811599 -28051028 - MIR SINE MIR -26 236 12 183 220 80 20 chr9 89811652 89811702 -28050925 + MIR3 SINE MIR 115 167 -41 1226 277 182 27 chr9 89811704 89812238 -28050389 - L2 LINE L2 -15 3298 2848 2426 87 0 0 chr9 89812238 89812538 -28050089 - AluSq SINE Alu -13 300 1 1226 277 182 27 chr9 89812538 89813220 -28049407 - L2 LINE L2 -465 2848 1842 470 149 0 0 chr9 89813248 89813315 -28049312 - AluJ/FLAM SINE Alu -244 68 2 1303 138 76 47 chr9 89813316 89813591 -28049036 + L1MA9 LINE L1 6027 6309 -3 719 300 214 24 chr9 89813774 89814700 -28047927 - L2 LINE L2 -1981 1333 232 515 208 181 27 chr9 89814719 89814868 -28047759 - MER5B DNA MER1_type -3 175 4 2252 105 0 20 chr9 89815461 89815767 -28046860 + AluSx SINE Alu 1 300 -12 369 156 0 0 chr9 89815774 89815851 -28046776 + G-rich Low_complexity Low_complexity 3 79 0 759 297 40 75 chr9 89816364 89816567 -28046060 - L1ME3A LINE L1 -30 6140 5931 2284 122 3 0 chr9 89816567 89816879 -28045748 - AluSp SINE Alu 0 313 1 759 297 40 75 chr9 89816879 89817221 -28045406 - L1ME3A LINE L1 -239 5931 5614 264 222 1 0 chr9 89817250 89817298 -28045329 - MER5A DNA MER1_type -79 99 63 216 97 0 0 chr9 89817298 89817329 -28045298 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 897 78 94 0 chr9 89817331 89817459 -28045168 - AluSg/x SINE Alu -20 289 150 186 172 0 0 chr9 89817460 89817489 -28045138 - MER5A DNA MER1_type -145 44 16 466 238 75 50 chr9 89817556 89817667 -28044960 - L1ME3A LINE L1 -737 5425 5318 1793 148 12 55 chr9 89817667 89817992 -28044635 - AluSx SINE Alu -1 311 1 466 238 75 50 chr9 89817992 89818258 -28044369 - L1ME3A LINE L1 -844 5318 5149 826 140 7 47 chr9 89818414 89818564 -28044063 + AluSg/x SINE Alu 158 301 -11 22 0 0 30 chr9 89818564 89818575 -28044052 + AT_rich Low_complexity Low_complexity 1 11 -21 2004 110 41 10 chr9 89818575 89818865 -28043762 - AluSg SINE Alu -11 299 1 22 0 0 30 chr9 89818865 89818886 -28043741 + AT_rich Low_complexity Low_complexity 11 32 0 1671 92 0 0 chr9 89818966 89819184 -28043443 + L1P LINE L1 3 220 -5926 501 266 51 19 chr9 89819288 89819446 -28043181 - MIR SINE MIR -57 205 43 442 235 148 7 chr9 89821253 89821402 -28041225 - MIR SINE MIR 0 262 93 1185 44 0 0 chr9 89821427 89821563 -28041064 + L1PA5 LINE L1 6004 6139 -15 213 119 0 0 chr9 89821563 89821605 -28041022 + (TA)n Simple_repeat Simple_repeat 2 43 0 2156 120 0 10 chr9 89821621 89821922 -28040705 + AluJb SINE Alu 1 298 -14 1174 131 31 16 chr9 89821982 89822173 -28040454 - L1MB5 LINE L1 0 6174 5981 293 300 79 29 chr9 89822501 89822641 -28039986 - MER5A DNA MER1_type 0 189 43 * 308 282 78 42 chr9 89822530 89822672 -28039955 + MER5A DNA MER1_type 41 187 -2 1010 225 108 71 chr9 89823474 89824003 -28038624 - MER39 LTR ERV1 -4 703 1 1195 159 56 9 chr9 89824199 89824413 -28038214 - MSTA LTR MaLR 0 426 203 350 140 18 0 chr9 89824431 89824488 -28038139 + AluJb SINE Alu 11 68 -234 1610 147 0 0 chr9 89824607 89824845 -28037782 + AluJb SINE Alu 70 307 -5 1295 134 30 0 chr9 89824845 89825047 -28037580 - MSTA LTR MaLR -219 209 2 294 290 19 47 chr9 89825478 89825585 -28037042 + MIR SINE MIR 16 119 -89 2734 10 0 10 chr9 89825692 89825997 -28036630 - AluYa5 SINE Alu -9 302 1 2550 179 40 13 chr9 89826145 89826614 -28036013 - L1PB4 LINE L1 0 6156 5675 8800 34 7 0 chr9 89826628 89828407 -28034220 - L1PA4 LINE L1 0 6155 4370 1432 140 45 15 chr9 89828407 89828672 -28033955 - L1PB4 LINE L1 -471 5685 5413 28 0 0 0 chr9 89829281 89829309 -28033318 + AT_rich Low_complexity Low_complexity 1 28 0 2490 76 0 3 chr9 89830255 89830559 -28032068 - AluSc SINE Alu -6 303 1 2313 133 65 11 chr9 89830580 89831042 -28031585 - MER1A DNA MER1_type -3 526 1 399 261 17 8 chr9 89831910 89832029 -28030598 + L2 LINE L2 3181 3300 -13 297 190 17 0 chr9 89832056 89832114 -28030513 + L2 LINE L2 2424 2482 -832 286 291 26 21 chr9 89832345 89832534 -28030093 - L1M4 LINE L1 -1343 4803 4614 * 318 219 42 73 chr9 89832530 89832626 -28030001 + L1MC/D LINE L1 5602 5694 -427 1037 272 13 13 chr9 89832632 89832945 -28029682 + L1MC4 LINE L1 6745 7057 -985 327 49 0 0 chr9 89832954 89832995 -28029632 + (TG)n Simple_repeat Simple_repeat 2 42 0 195 42 0 0 chr9 89833540 89833564 -28029063 + (TGAA)n Simple_repeat Simple_repeat 3 26 0 2150 118 23 3 chr9 89834716 89835022 -28027605 - AluSx SINE Alu 0 312 1 23 0 0 0 chr9 89835073 89835096 -28027531 + AT_rich Low_complexity Low_complexity 1 23 0 309 89 0 0 chr9 89835697 89835742 -28026885 + (TCCC)n Simple_repeat Simple_repeat 3 47 0 2173 131 0 3 chr9 89936394 89936700 -27925927 - AluSc SINE Alu -4 305 1 559 143 19 0 chr9 89937038 89937143 -27925484 - L1MA9 LINE L1 -38 6274 6168 276 333 0 13 chr9 89938881 89938956 -27923671 + MIR SINE MIR 2 75 -187 718 247 139 79 chr9 89939455 89939973 -27922654 - MLT1H LTR MaLR 0 549 1 530 223 11 11 chr9 89940482 89940657 -27921970 + CT-rich Low_complexity Low_complexity 3 177 0 201 125 31 47 chr9 89941459 89941523 -27921104 + (TAA)n Simple_repeat Simple_repeat 2 64 0 284 247 12 0 chr9 89942433 89942514 -27920113 + (TA)n Simple_repeat Simple_repeat 1 82 0 2072 142 0 28 chr9 89945581 89945891 -27916736 + AluSx SINE Alu 1 303 -9 189 0 0 0 chr9 89945891 89945912 -27916715 + (GA)n Simple_repeat Simple_repeat 2 22 0 23 0 0 0 chr9 89947976 89947999 -27914628 + AT_rich Low_complexity Low_complexity 1 23 0 212 197 0 15 chr9 89948285 89948351 -27914276 + (TG)n Simple_repeat Simple_repeat 2 66 0 2084 155 3 0 chr9 89948623 89948933 -27913694 + AluSx SINE Alu 1 311 -1 1940 146 10 13 chr9 89949407 89949709 -27912918 - AluJb SINE Alu -11 301 1 5418 136 12 22 chr9 89949898 89951273 -27911354 + L1PA13 LINE L1 4020 5472 -691 1466 148 0 9 chr9 89951273 89951502 -27911125 + AluSg/x SINE Alu 75 301 -9 5418 136 12 22 chr9 89951502 89952180 -27910447 + L1PA13 LINE L1 5472 6156 -7 387 280 16 8 chr9 89952743 89952868 -27909759 - MER45A DNA AcHobo -44 134 9 251 147 0 73 chr9 89952900 89952968 -27909659 + (TTCTC)n Simple_repeat Simple_repeat 3 65 0 2480 42 10 7 chr9 89953140 89953446 -27909181 - AluY SINE Alu -4 307 1 196 276 69 35 chr9 89953923 89954010 -27908617 - MIR SINE MIR -12 250 161 580 286 50 42 chr9 89954021 89954251 -27908376 - MIR SINE MIR -10 252 35 1304 162 12 0 chr9 89954423 89954670 -27907957 + L1MA8 LINE L1 6021 6270 -21 496 198 8 16 chr9 89954884 89955010 -27907617 + Zaphod DNA AcHobo 3438 3562 -469 289 208 19 0 chr9 89955022 89955075 -27907552 - MER58 DNA MER1_type -2366 54 1 359 40 0 20 chr9 89956152 89956202 -27906425 + (TAGA)n Simple_repeat Simple_repeat 1 49 0 2691 175 127 22 chr9 89956962 89957136 -27905491 - MER39 LTR ERV1 0 707 553 2145 121 0 0 chr9 89957136 89957426 -27905201 - AluSx SINE Alu -22 290 1 2691 175 127 22 chr9 89957426 89957871 -27904756 - MER39 LTR ERV1 -154 553 1 221 255 59 0 chr9 89958410 89958461 -27904166 + L2 LINE L2 3219 3272 0 2084 115 24 0 chr9 89959770 89960058 -27902569 + AluSx SINE Alu 3 297 -15 182 191 0 128 chr9 89960601 89960648 -27901979 + MIR3 SINE MIR 114 154 -54 23 68 0 0 chr9 89961735 89961779 -27900848 + AT_rich Low_complexity Low_complexity 1 44 0 40 73 0 0 chr9 89961804 89961886 -27900741 + AT_rich Low_complexity Low_complexity 1 82 0 340 195 16 54 chr9 89961886 89962071 -27900556 + (TATAA)n Simple_repeat Simple_repeat 2 179 0 381 317 0 12 chr9 89962094 89962261 -27900366 - L1M4 LINE L1 -1492 4654 4490 602 229 28 0 chr9 89962567 89962711 -27899916 - L1ME2 LINE L1 -12 6152 6005 204 40 0 0 chr9 89962711 89962736 -27899891 + (T)n Simple_repeat Simple_repeat 1 25 0 1561 94 35 0 chr9 89962739 89962942 -27899685 - AluSq SINE Alu -103 210 1 771 249 38 19 chr9 89962942 89963151 -27899476 - L1ME2 LINE L1 -143 6021 5809 32 57 0 0 chr9 89963635 89963688 -27898939 + AT_rich Low_complexity Low_complexity 1 53 0 26 50 0 0 chr9 89964060 89964100 -27898527 + AT_rich Low_complexity Low_complexity 1 40 0 565 74 0 12 chr9 89964513 89964594 -27898033 - MADE1 DNA Mariner 0 80 1 326 311 11 0 chr9 89964645 89964735 -27897892 - L2 LINE L2 -1 3312 3222 272 290 58 52 chr9 89965301 89965456 -27897171 - HAL1b LINE L1 -863 485 330 24 0 0 0 chr9 89965510 89965534 -27897093 + AT_rich Low_complexity Low_complexity 1 24 0 234 0 0 0 chr9 89966419 89966445 -27896182 + (CA)n Simple_repeat Simple_repeat 2 27 0 23 54 0 0 chr9 89966499 89966536 -27896091 + AT_rich Low_complexity Low_complexity 1 37 0 189 227 68 0 chr9 89969218 89969262 -27893365 - L2 LINE L2 0 3272 3226 487 312 20 25 chr9 89970092 89970294 -27892333 - MIR SINE MIR -58 204 4 246 32 0 0 chr9 89970611 89970642 -27891985 + (TG)n Simple_repeat Simple_repeat 2 32 0 788 349 154 11 chr9 89970714 89971265 -27891362 - L3 LINE CR1 -7 1570 941 458 291 86 61 chr9 89971461 89971774 -27890853 - L1MEc LINE L1 -3925 2471 2151 250 329 50 43 chr9 89972063 89972343 -27890284 - HAL1 LINE L1 -803 1704 1423 506 240 33 0 chr9 89972347 89972468 -27890159 - MER63 DNA MER1_type -235 826 702 235 371 0 17 chr9 89972482 89972598 -27890029 + L2 LINE L2 2693 2806 -508 2348 71 0 0 chr9 89972809 89973128 -27889499 - AluY SINE Alu 0 319 1 1606 134 31 12 chr9 89973139 89973393 -27889234 - MLT1A1 LTR MaLR -3 362 104 186 369 62 54 chr9 89973446 89973687 -27888940 + L2 LINE L2 2978 3220 -52 457 338 75 31 chr9 89975057 89975406 -27887221 - L1M4 LINE L1 -2808 3338 2975 232 127 36 0 chr9 89977345 89977400 -27885227 + (TA)n Simple_repeat Simple_repeat 2 58 0 226 167 0 56 chr9 89977421 89977475 -27885152 - L1MC4 LINE L1 -1339 6703 6653 226 171 14 43 chr9 89977488 89977558 -27885069 + (TATAA)n Simple_repeat Simple_repeat 5 72 0 2264 106 3 0 chr9 89977582 89977885 -27884742 + AluSx SINE Alu 1 304 -8 244 297 62 23 chr9 89978628 89978756 -27883871 + L2 LINE L2 3117 3249 -64 2072 145 0 0 chr9 89978857 89979161 -27883466 + AluSx SINE Alu 1 304 -8 5463 270 83 28 chr9 89979161 89980006 -27882621 - L2 LINE L2 -94 3219 2422 2277 110 0 0 chr9 89980006 89980298 -27882329 + AluSx SINE Alu 3 294 -18 5463 270 83 28 chr9 89980298 89981604 -27881023 - L2 LINE L2 -891 2422 940 43206 30 21 1 chr9 89981605 89987637 -27874990 + L1HS LINE L1 1 6155 0 21 0 0 0 chr9 89987637 89987658 -27874969 + AT_rich Low_complexity Low_complexity 1 21 0 240 35 0 0 chr9 89987670 89987699 -27874928 + (A)n Simple_repeat Simple_repeat 1 29 0 808 264 54 25 chr9 89987807 89988084 -27874543 - L2 LINE L2 -2368 946 662 346 206 0 0 chr9 89988080 89988143 -27874484 + L2 LINE L2 3251 3313 0 * 186 192 0 0 chr9 89989058 89989110 -27873517 + (TCCA)n Simple_repeat Simple_repeat 4 55 0 229 333 59 29 chr9 89989112 89989214 -27873413 - L2 LINE L2 0 3272 3168 232 211 18 0 chr9 89989290 89989347 -27873280 + (TA)n Simple_repeat Simple_repeat 1 58 0 290 337 82 51 chr9 89990122 89990416 -27872211 - L2 LINE L2 -4 3268 2966 388 219 114 0 chr9 89993691 89993796 -27868831 - MIR SINE MIR 0 262 146 611 40 0 0 chr9 89993802 89993906 -27868721 - AluY SINE Alu 0 311 208 224 284 221 0 chr9 89993909 89994004 -27868623 - MIR SINE MIR -142 120 5 734 288 117 19 chr9 89994561 89995099 -27867528 - L1ME4a LINE L1 -239 5882 5292 200 191 0 44 chr9 89995230 89995298 -27867329 + (TAA)n Simple_repeat Simple_repeat 2 66 0 283 162 40 0 chr9 89995353 89995427 -27867200 + (TAGA)n Simple_repeat Simple_repeat 2 78 0 889 280 69 27 chr9 89995428 89996060 -27866567 - L1ME4a LINE L1 -189 5932 5260 380 268 91 72 chr9 89996067 89996276 -27866351 - L1ME4a LINE L1 -2129 4017 3805 366 293 42 57 chr9 89996488 89996700 -27865927 - HAL1 LINE L1 -7 2500 2292 612 274 58 40 chr9 89998105 89998331 -27864296 + L2 LINE L2 2064 2293 -1021 2829 151 70 15 chr9 89999992 90000521 -27862106 - L1PA16 LINE L1 -1 6165 5608 728 126 9 0 chr9 90000588 90000699 -27861928 - AluSg/x SINE Alu -7 303 192 628 298 32 3 chr9 90001289 90001503 -27861124 + MIR SINE MIR 19 241 -21 548 292 43 12 chr9 90001525 90001843 -27860784 - L1ME LINE L1 -382 5739 5409 28 0 0 0 chr9 90002157 90002185 -27860442 + AT_rich Low_complexity Low_complexity 1 28 0 2075 183 40 90 chr9 90002219 90002787 -27859840 + L1MDa LINE L1 2 541 -5999 1623 131 21 78 chr9 90002797 90003014 -27859613 + L1MDa LINE L1 2189 2376 -4164 2041 137 17 0 chr9 90003014 90003313 -27859314 + AluSx SINE Alu 1 304 -8 1623 131 21 78 chr9 90003313 90003478 -27859149 + L1MDa LINE L1 2376 2549 -3991 500 294 43 21 chr9 90003897 90004084 -27858543 - L2 LINE L2 0 3313 3123 2682 93 25 0 chr9 90004299 90004665 -27857962 - THE1C LTR MaLR 0 375 1 1060 258 28 67 chr9 90004665 90005026 -27857601 - LTR16A1 LTR ERVL -7 450 104 38 61 0 0 chr9 90005393 90005459 -27857168 + AT_rich Low_complexity Low_complexity 1 66 0 1822 161 0 36 chr9 90005480 90005785 -27856842 + AluJo SINE Alu 2 295 -17 777 281 29 24 chr9 90006263 90006473 -27856154 + MER115 DNA AcHobo 1 211 -482 218 121 61 0 chr9 90006796 90006862 -27855765 + (TA)n Simple_repeat Simple_repeat 2 71 0 393 277 43 0 chr9 90006901 90006995 -27855632 - MIR SINE MIR -146 116 19 217 132 0 0 chr9 90007084 90007122 -27855505 + (CAAAA)n Simple_repeat Simple_repeat 1 38 0 2154 94 3 17 chr9 90007498 90007796 -27854831 + AluSg SINE Alu 1 294 -16 2387 93 0 0 chr9 90008800 90009101 -27853526 + AluSc SINE Alu 1 301 -8 341 311 41 75 chr9 90012178 90012471 -27850156 + HAL1 LINE L1 830 1112 -1395 17599 124 25 18 chr9 90012481 90013313 -27849314 + L1M1 LINE L1 606 1430 -6135 2335 89 0 3 chr9 90013313 90013615 -27849012 - AluY SINE Alu -10 301 1 17599 124 25 18 chr9 90013615 90015674 -27846953 + L1M1 LINE L1 1430 3519 -4046 4418 77 20 6 chr9 90015708 90016341 -27846286 + L1MA3 LINE L1 5664 6305 0 674 264 51 57 chr9 90016651 90016756 -27845871 + L2 LINE L2 3001 3105 -208 6186 128 18 16 chr9 90016756 90017724 -27844903 + LTR5 LTR ERVK 1 969 0 674 264 51 57 chr9 90017724 90017745 -27844882 + L2 LINE L2 3105 3125 -188 2298 100 24 40 chr9 90017745 90018115 -27844512 - THE1B LTR MaLR 0 364 1 674 264 51 57 chr9 90018115 90018301 -27844326 + L2 LINE L2 3125 3312 -1 1216 79 6 0 chr9 90020226 90020391 -27842236 + AluSg/x SINE Alu 144 309 0 279 191 24 24 chr9 90021277 90021403 -27841224 + (TA)n Simple_repeat Simple_repeat 1 126 0 226 171 14 43 chr9 90021416 90021486 -27841141 + (TATAA)n Simple_repeat Simple_repeat 5 72 0 2315 107 3 0 chr9 90021510 90021819 -27840808 + AluSx SINE Alu 1 310 -2 455 360 42 11 chr9 90022208 90022397 -27840230 - MER91A DNA MER1_type -1 195 1 233 308 56 28 chr9 90022430 90022537 -27840090 - L2 LINE L2 -13 3300 3191 2351 96 3 0 chr9 90022561 90022863 -27839764 + AluY SINE Alu 1 303 -8 1774 122 7 3 chr9 90022969 90023255 -27839372 + LTR1 LTR ERV1 499 785 0 2035 154 55 96 chr9 90023345 90023942 -27838685 - LTR1 LTR ERV1 -212 573 1 281 219 0 0 chr9 90025884 90025948 -27836679 + L1M4 LINE L1 4730 4793 -1353 216 0 0 0 chr9 90026197 90026221 -27836406 + (A)n Simple_repeat Simple_repeat 1 24 0 32 67 0 0 chr9 90027177 90027237 -27835390 + AT_rich Low_complexity Low_complexity 1 60 0 795 255 36 0 chr9 90027264 90027456 -27835171 - MIR SINE MIR 0 262 64 573 181 10 14 chr9 90027550 90027709 -27834918 - L1MB8 LINE L1 -30 6148 5986 729 303 21 0 chr9 90027734 90027922 -27834705 - MIR SINE MIR -67 195 4 309 317 25 8 chr9 90027930 90028050 -27834577 + L1M4 LINE L1 3766 3887 -2259 246 315 11 22 chr9 90029213 90029305 -27833322 + MIR SINE MIR 24 114 -94 * 372 329 176 11 chr9 90029299 90029652 -27832975 + L2 LINE L2 1861 2271 -1043 204 326 0 0 chr9 90029740 90029789 -27832838 - MER5A DNA MER1_type -132 57 9 200 333 124 17 chr9 90030095 90030329 -27832298 + L2 LINE L2 2804 3062 -210 231 262 0 16 chr9 90030400 90030461 -27832166 + MLT1H LTR MaLR 134 193 -356 230 0 33 0 chr9 90031151 90031181 -27831446 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 679 194 72 14 chr9 90031770 90031938 -27830689 + AluJb SINE Alu 138 313 0 2382 63 3 31 chr9 90031961 90032279 -27830348 + AluY SINE Alu 1 309 -2 184 169 72 133 chr9 90032932 90033015 -27829612 - L3b LINE CR1 -283 1300 1223 803 56 28 0 chr9 90034035 90034142 -27828485 - L1PA10 LINE L1 -4 6164 6055 4801 85 11 0 chr9 90034384 90035029 -27827598 - L1PA10 LINE L1 -4 6164 5513 198 103 0 0 chr9 90035291 90035320 -27827307 + (CA)n Simple_repeat Simple_repeat 2 30 0 2443 116 80 5 chr9 90036961 90037359 -27825268 + MSTA LTR MaLR 1 428 0 1462 197 17 29 chr9 90037834 90038184 -27824443 + L1MC3 LINE L1 7434 7779 -6 1359 305 124 38 chr9 90038189 90038954 -27823673 - L2 LINE L2 -659 2655 1825 2274 118 0 7 chr9 90038984 90039290 -27823337 + AluSx SINE Alu 9 312 0 23 0 0 0 chr9 90039290 90039313 -27823314 + AT_rich Low_complexity Low_complexity 1 23 0 284 293 221 0 chr9 90039444 90039584 -27823043 - L2 LINE L2 -1319 1995 1825 2240 121 0 7 chr9 90039614 90039920 -27822707 + AluSx SINE Alu 9 312 0 187 352 104 0 chr9 90039935 90040060 -27822567 - L2 LINE L2 -1480 1834 1697 24 32 0 0 chr9 90040689 90040720 -27821907 + AT_rich Low_complexity Low_complexity 1 31 0 595 315 89 31 chr9 90041143 90041502 -27821125 + L1ME LINE L1 2334 2713 -3433 462 318 73 37 chr9 90041498 90041853 -27820774 + HAL1 LINE L1 1410 1777 -730 * 484 259 151 33 chr9 90043313 90043618 -27819009 + L1ME LINE L1 5384 5747 -374 1895 158 0 0 chr9 90043618 90043924 -27818703 + AluJb SINE Alu 11 316 0 484 259 151 33 chr9 90043924 90044007 -27818620 + L1ME LINE L1 5747 5819 -302 668 158 14 7 chr9 90044702 90044841 -27817786 - LTR37A LTR ERV1 -7 419 280 624 197 57 31 chr9 90044988 90045216 -27817411 + MER20B DNA MER1_type 550 783 0 242 333 16 16 chr9 90045955 90046084 -27816543 + LTR67 LTR ERVL 428 556 -1 195 100 0 0 chr9 90046733 90046763 -27815864 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 466 219 183 7 chr9 90047030 90047167 -27815460 - MER5A DNA MER1_type 0 189 29 382 319 60 87 chr9 90047256 90047726 -27814901 + L2 LINE L2 440 896 -2418 738 243 23 23 chr9 90047746 90047923 -27814704 + MER45A DNA AcHobo 2 178 0 1946 131 30 0 chr9 90047966 90048264 -27814363 - AluSq SINE Alu -6 307 1 340 354 46 8 chr9 90048883 90049013 -27813614 + HAL1 LINE L1 816 950 -1557 693 236 29 0 chr9 90049147 90049321 -27813306 - MLT1G LTR MaLR -2 588 410 2042 257 60 21 chr9 90049375 90050056 -27812571 - MER21B LTR ERV1 -58 805 98 1233 344 150 36 chr9 90050485 90051996 -27810631 + L2 LINE L2 1122 2804 -510 184 375 62 0 chr9 90052093 90052205 -27810422 + L2 LINE L2 2934 3052 -220 385 96 0 0 chr9 90052267 90052319 -27810308 + MER51D LTR ERV1 500 551 -106 24 0 0 0 chr9 90052319 90052343 -27810284 + AT_rich Low_complexity Low_complexity 1 24 0 270 340 107 10 chr9 90052359 90052462 -27810165 + L2 LINE L2 3145 3257 -15 252 275 11 79 chr9 90052704 90052882 -27809745 - MLT1J LTR MaLR -235 276 111 21 71 0 0 chr9 90053028 90053070 -27809557 + AT_rich Low_complexity Low_complexity 1 42 0 2181 120 3 0 chr9 90053221 90053522 -27809105 + AluSx SINE Alu 1 302 -10 213 269 0 0 chr9 90053603 90053670 -27808957 + (TA)n Simple_repeat Simple_repeat 1 67 0 203 30 0 61 chr9 90053805 90053838 -27808789 + (CAAAA)n Simple_repeat Simple_repeat 3 33 0 385 337 53 16 chr9 90053986 90054176 -27808451 - L2 LINE L2 -1009 2305 2109 2134 127 30 30 chr9 90054202 90054573 -27808054 + THE1C LTR MaLR 5 375 0 10189 109 48 15 chr9 90054573 90054928 -27807699 + THE1C-int LTR MaLR 1 343 -1237 2290 108 0 0 chr9 90054928 90055224 -27807403 - AluSc SINE Alu -10 299 4 10189 109 48 15 chr9 90055224 90056398 -27806229 + THE1C-int LTR MaLR 343 1580 0 2226 140 19 19 chr9 90056398 90056769 -27805858 + THE1C LTR MaLR 1 371 -4 447 361 3 10 chr9 90056817 90057130 -27805497 + MLT1-int LTR MaLR 266 576 -795 282 309 30 60 chr9 90057351 90057519 -27805108 + MLT1-int LTR MaLR 701 863 -508 805 243 19 10 chr9 90058092 90058298 -27804329 + MLT1F LTR MaLR 1 208 -334 488 90 0 64 chr9 90058298 90058376 -27804251 + MER31B LTR ERV1 1 73 -393 2585 146 26 2 chr9 90058458 90058884 -27803743 - L1MC1 LINE L1 -428 5905 5470 4460 230 68 7 chr9 90058915 90060268 -27802359 - L1M4 LINE L1 -1870 4276 2841 294 314 41 0 chr9 90060294 90060417 -27802210 + L1ME4a LINE L1 5471 5582 -539 254 305 159 46 chr9 90060498 90060578 -27802049 - MLT1J1 LTR MaLR -2 444 374 2916 111 22 15 chr9 90060578 90061038 -27801589 - MER4C LTR ERV1 0 465 3 254 305 159 46 chr9 90061038 90061328 -27801299 - MLT1J1 LTR MaLR -72 374 32 241 299 291 31 chr9 90061629 90062014 -27800613 + L2 LINE L2 2229 2713 -601 231 327 92 40 chr9 90062329 90062601 -27800026 + L2 LINE L2 3028 3313 0 194 324 59 29 chr9 90062877 90062979 -27799648 - L2 LINE L2 -48 3265 3161 2375 82 3 3 chr9 90063615 90063919 -27798708 + AluY SINE Alu 1 304 -7 1314 207 36 4 chr9 90064194 90064474 -27798153 + L1MD1 LINE L1 5946 6234 -8 2243 224 95 47 chr9 90064483 90065318 -27797309 + L1MC4 LINE L1 7011 7885 -157 1410 201 83 25 chr9 90065541 90065855 -27796772 - MER58B DNA MER1_type 0 341 10 23 54 0 0 chr9 90065945 90065982 -27796645 + AT_rich Low_complexity Low_complexity 1 37 0 918 249 123 9 chr9 90068049 90068471 -27794156 + L1ME4a LINE L1 5635 6104 -17 561 253 71 18 chr9 90070042 90070212 -27792415 + MIR SINE MIR 15 193 -69 684 290 36 18 chr9 90070328 90070552 -27792075 - MIR SINE MIR -14 248 21 185 232 18 80 chr9 90072534 90072646 -27789981 + MIR SINE MIR 118 222 -40 2310 94 0 7 chr9 90073056 90073364 -27789263 + AluSx SINE Alu 1 306 -6 240 235 20 88 chr9 90073485 90073587 -27789040 - MER5B DNA MER1_type -6 172 78 235 346 134 34 chr9 90073626 90073947 -27788680 - L2 LINE L2 -661 2653 2301 211 313 42 31 chr9 90074595 90074691 -27787936 + MIR SINE MIR 117 213 -49 753 291 153 48 chr9 90075582 90076267 -27786360 + L2 LINE L2 2559 3309 -4 226 245 11 85 chr9 90076453 90076547 -27786080 + HAL1 LINE L1 1538 1624 -883 1968 142 14 0 chr9 90076959 90077255 -27785372 - AluSx SINE Alu -12 300 1 344 293 116 31 chr9 90077288 90077547 -27785080 + L1ME1 LINE L1 2014 2254 -3961 305 211 232 0 chr9 90077928 90078023 -27784604 - HAL1 LINE L1 -924 1566 1450 21 0 0 0 chr9 90078323 90078344 -27784283 + AT_rich Low_complexity Low_complexity 1 21 0 336 276 11 11 chr9 90078372 90078459 -27784168 + L2 LINE L2 3226 3312 -1 334 289 64 82 chr9 90078631 90078927 -27783700 - L1MEd LINE L1 -1146 1344 967 2216 110 0 13 chr9 90079700 90079835 -27782792 + AluSq SINE Alu 1 136 -177 2140 134 0 0 chr9 90079835 90080133 -27782494 + AluSq SINE Alu 1 298 -15 2216 110 0 13 chr9 90080133 90080298 -27782329 + AluSq SINE Alu 136 297 -16 180 176 0 0 chr9 90080442 90080476 -27782151 + (CATATA)n Simple_repeat Simple_repeat 3 36 0 21 0 0 0 chr9 90080720 90080741 -27781886 + AT_rich Low_complexity Low_complexity 1 21 0 31 26 0 0 chr9 90081252 90081290 -27781337 + AT_rich Low_complexity Low_complexity 1 38 0 351 250 93 12 chr9 90081761 90081933 -27780694 + L1MC/D LINE L1 5621 5806 -2002 260 233 15 113 chr9 90082458 90082591 -27780036 - L2 LINE L2 -61 3252 3133 402 314 217 0 chr9 90082598 90082805 -27779822 - L2 LINE L2 -645 2669 2418 350 272 163 7 chr9 90082805 90082952 -27779675 - L2 LINE L2 -1398 1916 1747 2392 81 10 0 chr9 90082999 90083307 -27779320 + AluY SINE Alu 1 311 0 342 335 65 45 chr9 90083991 90084436 -27778191 + L1ME1 LINE L1 3331 3784 -2431 349 277 188 32 chr9 90084812 90085172 -27777455 + L1ME1 LINE L1 3995 4412 -1803 296 262 29 19 chr9 90085245 90085348 -27777279 + L1ME1 LINE L1 4556 4659 -1556 236 319 71 0 chr9 90085375 90085488 -27777139 + L1ME1 LINE L1 4791 4911 -1304 2278 226 29 4 chr9 90085612 90086156 -27776471 + L1ME1 LINE L1 5358 5915 -320 1931 122 4 0 chr9 90086304 90086575 -27776052 + AluSg SINE Alu 1 272 -38 203 209 18 91 chr9 90086601 90086711 -27775916 + (TAGGG)n Simple_repeat Simple_repeat 5 106 0 229 173 13 13 chr9 90086712 90086787 -27775840 + (CAAGG)n Simple_repeat Simple_repeat 2 76 0 470 234 22 15 chr9 90087160 90087297 -27775330 - MER5A DNA MER1_type -51 138 1 352 290 40 10 chr9 90087305 90087405 -27775222 - MIR SINE MIR -57 151 49 276 266 148 40 chr9 90087505 90087680 -27774947 - MIR SINE MIR -10 252 58 204 125 0 0 chr9 90088817 90088849 -27773778 + (CA)n Simple_repeat Simple_repeat 2 33 0 405 0 0 0 chr9 90089920 90089965 -27772662 + (TG)n Simple_repeat Simple_repeat 2 46 0 529 103 0 41 chr9 90089969 90090066 -27772561 - MER53 DNA DNA -2 187 95 598 204 0 17 chr9 90090376 90090557 -27772070 + GA-rich Low_complexity Low_complexity 1 178 0 691 275 128 29 chr9 90090822 90091277 -27771350 + L1ME4a LINE L1 5513 6012 -109 23 33 0 0 chr9 90091727 90091757 -27770870 + AT_rich Low_complexity Low_complexity 1 30 0 473 335 39 6 chr9 90091965 90092147 -27770480 + MIR SINE MIR 36 223 -39 1550 201 10 17 chr9 90092432 90092730 -27769897 + AluJb SINE Alu 4 299 -13 2485 50 0 0 chr9 90094483 90094766 -27767861 - AluY SINE Alu -12 299 17 2122 133 33 25 chr9 90094825 90095186 -27767441 + THE1B LTR MaLR 1 364 0 263 191 0 0 chr9 90096382 90096424 -27766203 + MIR SINE MIR 108 149 -59 182 294 55 46 chr9 90097057 90097166 -27765461 - L2 LINE L2 -1 3312 3203 642 237 160 0 chr9 90097293 90097449 -27765178 - MER5A DNA MER1_type 0 189 9 749 212 12 30 chr9 90097501 90097666 -27764961 - MER20 DNA MER1_type -31 188 27 4030 214 50 55 chr9 90097772 90097943 -27764684 + L1MDb LINE L1 184 354 -6052 2567 80 39 3 chr9 90097943 90098305 -27764322 + THE1C LTR MaLR 1 375 0 4030 214 50 55 chr9 90098305 90099016 -27763611 + L1MDb LINE L1 354 1067 -5339 637 156 0 18 chr9 90099016 90099125 -27763502 + U6 snRNA snRNA 1 107 0 4030 214 50 55 chr9 90099125 90100208 -27762419 + L1MDb LINE L1 1067 2286 -4120 2094 111 0 32 chr9 90101099 90101414 -27761213 - AluSg SINE Alu -5 305 1 351 254 145 32 chr9 90101567 90101774 -27760853 + MIR SINE MIR 28 261 -1 318 307 40 27 chr9 90103177 90103327 -27759300 + HAL1b LINE L1 331 482 -866 369 0 0 0 chr9 90103678 90103719 -27758908 + (CA)n Simple_repeat Simple_repeat 2 42 0 40 73 0 0 chr9 90103940 90104022 -27758605 + AT_rich Low_complexity Low_complexity 1 82 0 212 192 77 0 chr9 90104044 90104122 -27758505 + (TTAA)n Simple_repeat Simple_repeat 4 87 0 21 0 0 0 chr9 90104142 90104163 -27758464 + AT_rich Low_complexity Low_complexity 1 21 0 1715 166 33 7 chr9 90104549 90104851 -27757776 + LOR1b LTR ERV1 152 461 0 516 105 0 40 chr9 90104931 90105007 -27757620 + LOR1a LTR ERV1 425 497 0 1035 153 34 0 chr9 90105065 90105242 -27757385 + Tigger1 DNA MER2_type 49 231 -2187 1794 161 0 11 chr9 90105269 90105588 -27757039 - AluJb SINE Alu 0 316 1 8777 109 19 65 chr9 90105646 90106805 -27755822 + Tigger1 DNA MER2_type 1005 2083 -335 1609 188 18 0 chr9 90106805 90107087 -27755540 + AluJo SINE Alu 2 288 -24 8777 109 19 65 chr9 90107087 90107409 -27755218 + Tigger1 DNA MER2_type 2083 2418 0 198 294 105 42 chr9 90108526 90108669 -27753958 - MIR SINE MIR -63 199 48 254 264 14 0 chr9 90109037 90109109 -27753518 + (TATATG)n Simple_repeat Simple_repeat 4 76 0 2395 104 30 33 chr9 90109756 90110121 -27752506 - THE1B LTR MaLR 0 364 1 2051 138 0 28 chr9 90110794 90111112 -27751515 + AluSx SINE Alu 1 309 -3 249 286 0 26 chr9 90111167 90111244 -27751383 + (CATA)n Simple_repeat Simple_repeat 3 77 0 621 261 59 40 chr9 90111660 90111913 -27750714 - MIR SINE MIR -3 259 2 1986 134 0 37 chr9 90112595 90112894 -27749733 + AluSq SINE Alu 1 288 -25 979 176 12 0 chr9 90113451 90113621 -27749006 - AluJb SINE Alu -22 290 119 1157 237 96 72 chr9 90114440 90115023 -27747604 + MLT1E1 LTR MaLR 58 654 0 261 342 87 0 chr9 90116087 90116236 -27746391 + MIR SINE MIR 1 162 -100 1453 193 7 44 chr9 90116316 90116642 -27745985 + AluJo SINE Alu 1 315 0 632 181 0 0 chr9 90116645 90116750 -27745877 + AluJb SINE Alu 179 283 -29 329 301 122 0 chr9 90116923 90117046 -27745581 - MIR SINE MIR -21 241 104 1921 204 63 47 chr9 90117644 90118197 -27744430 + MER119 DNA MER1_type 5 566 -17 338 0 24 0 chr9 90118291 90118333 -27744294 + (TTA)n Simple_repeat Simple_repeat 3 45 0 1483 75 0 0 chr9 90118333 90118520 -27744107 - L1PA7 LINE L1 -18 6136 5950 2369 120 5 8 chr9 90118762 90119129 -27743498 + MER47A DNA MER2_type 1 366 0 329 346 16 38 chr9 90119134 90119319 -27743308 - MIR SINE MIR -76 186 6 347 301 155 5 chr9 90119664 90119877 -27742750 + L1ME4a LINE L1 5670 5914 -207 736 199 0 8 chr9 90120026 90120157 -27742470 + FLAM_A SINE Alu 1 130 -3 229 136 30 30 chr9 90120693 90120759 -27741868 + (TA)n Simple_repeat Simple_repeat 2 67 0 186 313 50 12 chr9 90120759 90120839 -27741788 + L3 LINE CR1 1402 1484 -93 352 316 83 6 chr9 90121210 90121378 -27741249 - MIR SINE MIR -10 252 72 14367 164 40 32 chr9 90171386 90172653 -27689974 + L1MA4A LINE L1 119 1375 -5630 2305 98 3 0 chr9 90172653 90172950 -27689677 + AluSp SINE Alu 3 300 -13 14367 164 40 32 chr9 90172950 90173967 -27688660 + L1MA4A LINE L1 1375 2383 -4622 213 65 0 0 chr9 90173967 90173998 -27688629 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 14367 164 40 32 chr9 90173998 90175328 -27687299 + L1MA4A LINE L1 2383 3701 -3304 2626 61 0 3 chr9 90175328 90175670 -27686957 + L1PA7 LINE L1 5814 6154 0 14367 164 40 32 chr9 90175670 90176359 -27686268 + L1MA4A LINE L1 3701 4383 -2622 1604 146 107 0 chr9 90176359 90176641 -27685986 + AluJo SINE Alu 5 314 0 14367 164 40 32 chr9 90176641 90178522 -27684105 + L1MA4A LINE L1 4383 6366 -639 393 128 12 23 chr9 90178539 90178625 -27684002 + GA-rich Low_complexity Low_complexity 2 86 0 1815 157 0 7 chr9 90178630 90178917 -27683710 + AluJb SINE Alu 28 312 0 3261 130 19 84 chr9 90178927 90179617 -27683010 + L1MA4A LINE L1 6357 7001 -4 2436 102 8 52 chr9 90180532 90180608 -27682019 - THE1B LTR MaLR 0 364 286 2347 100 10 0 chr9 90180608 90180917 -27681710 + AluSx SINE Alu 1 312 0 2436 102 8 52 chr9 90180917 90181221 -27681406 - THE1B LTR MaLR -78 286 1 998 33 0 0 chr9 90182816 90182938 -27679689 + L1PA4 LINE L1 6031 6152 -3 199 322 0 0 chr9 90183507 90183566 -27679061 - L2 LINE L2 -562 2752 2694 272 271 47 39 chr9 90183610 90183739 -27678888 + L1MC5 LINE L1 7604 7733 -228 2260 105 10 22 chr9 90184123 90184437 -27678190 - AluSx SINE Alu -2 310 1 6854 64 7 21 chr9 90184598 90185468 -27677159 + L1PA8 LINE L1 5194 6051 -121 2262 114 0 0 chr9 90185468 90185767 -27676860 + AluSg SINE Alu 1 299 -11 6854 64 7 21 chr9 90185767 90185876 -27676751 + L1PA8 LINE L1 6051 6160 -12 203 132 19 57 chr9 90185885 90185938 -27676689 + A-rich Low_complexity Low_complexity 3 53 0 419 237 29 19 chr9 90187483 90187634 -27674993 + MER63 DNA MER1_type 683 1060 0 186 43 0 0 chr9 90187693 90187716 -27674911 + (TC)n Simple_repeat Simple_repeat 1 23 0 290 311 36 96 chr9 90187756 90188036 -27674591 + L2 LINE L2 2967 3229 -43 519 295 22 49 chr9 90188090 90188314 -27674313 - MIR SINE MIR -30 232 15 327 106 0 76 chr9 90188371 90188437 -27674190 - MER106B DNA MER1_type -905 154 94 530 300 58 63 chr9 90188588 90188699 -27673928 - L1MC4a LINE L1 -1892 5916 5806 2212 129 0 0 chr9 90188699 90189008 -27673619 + AluSx SINE Alu 1 309 -3 530 300 58 63 chr9 90189008 90189306 -27673321 - L1MC4a LINE L1 -2002 5806 5509 2247 118 3 0 chr9 90190123 90190429 -27672198 + AluSx SINE Alu 1 307 -5 291 331 133 11 chr9 90190515 90190696 -27671931 - MIR SINE MIR -34 228 26 328 180 22 124 chr9 90191874 90191934 -27670693 - Tigger7 DNA MER2_type -7 2580 2530 2229 128 0 0 chr9 90191934 90192246 -27670381 + AluSx SINE Alu 1 312 0 328 180 22 124 chr9 90192246 90192274 -27670353 - Tigger7 DNA MER2_type -57 2530 2501 * 1274 200 75 4 chr9 90192271 90192511 -27670116 - Tigger7 DNA MER2_type -474 259 3 361 271 93 8 chr9 90192529 90192658 -27669969 - MIR3 SINE MIR -39 169 30 26 50 0 0 chr9 90193033 90193073 -27669554 + AT_rich Low_complexity Low_complexity 1 40 0 1974 121 43 0 chr9 90193158 90193439 -27669188 + AluSx SINE Alu 1 293 -19 381 254 60 76 chr9 90194663 90194839 -27667788 - MIR SINE MIR -64 144 2 1936 108 0 52 chr9 90195480 90195767 -27666860 + AluSg1 SINE Alu 1 272 -37 1004 48 8 0 chr9 90196915 90197040 -27665587 + L1PA8 LINE L1 6034 6159 -13 1074 86 0 0 chr9 90197049 90197200 -27665427 + (GGAA)n Simple_repeat Simple_repeat 2 152 0 226 258 0 16 chr9 90197975 90198037 -27664590 + HAL1 LINE L1 619 679 -1828 1531 177 15 72 chr9 90198112 90198497 -27664130 + L1MA8 LINE L1 5927 6281 -10 976 265 44 41 chr9 90198512 90199146 -27663481 + HAL1 LINE L1 1095 1835 -672 745 244 48 30 chr9 90199169 90199439 -27663188 + HAL1 LINE L1 1950 2224 -283 351 285 62 8 chr9 90199594 90199724 -27662903 + HAL1 LINE L1 2346 2482 -25 2840 125 6 15 chr9 90199724 90200196 -27662431 + L1MA5 LINE L1 5827 6294 -6 383 246 64 30 chr9 90200287 90200490 -27662137 - L1MC5 LINE L1 -212 7749 7540 780 288 57 22 chr9 90200519 90200748 -27661879 + MIR SINE MIR 2 238 -24 21 95 0 0 chr9 90200812 90200875 -27661752 + AT_rich Low_complexity Low_complexity 1 63 0 6673 71 10 2 chr9 90201019 90201908 -27660719 + L1PA7 LINE L1 5259 6154 0 4481 152 48 19 chr9 90202031 90202125 -27660502 + L1MB2 LINE L1 5276 5366 -805 357 24 0 0 chr9 90202125 90202167 -27660460 + (CA)n Simple_repeat Simple_repeat 2 43 0 4481 152 48 19 chr9 90202167 90202943 -27659684 + L1MB2 LINE L1 5366 6171 0 380 346 88 32 chr9 90202949 90203237 -27659390 + HAL1b LINE L1 271 586 -762 4147 97 75 12 chr9 90203237 90203890 -27658737 - L1MA3 LINE L1 0 6305 5612 380 346 88 32 chr9 90203890 90203977 -27658650 + HAL1b LINE L1 586 667 -681 181 257 139 83 chr9 90205177 90205321 -27657306 - L2 LINE L2 -1114 2200 2049 887 160 0 0 chr9 90205692 90205823 -27656804 + FLAM_C SINE Alu 1 131 -12 392 243 52 112 chr9 90206228 90206495 -27656132 + L1ME LINE L1 5507 5757 -364 251 193 79 0 chr9 90206547 90206661 -27655966 + (TA)n Simple_repeat Simple_repeat 2 124 0 1122 199 28 32 chr9 90206661 90206912 -27655715 + LTR8 LTR ERV1 442 691 0 596 209 187 7 chr9 90206912 90206934 -27655693 + MER8 DNA MER2_type 76 93 -146 192 77 0 0 chr9 90206934 90206960 -27655667 + (TA)n Simple_repeat Simple_repeat 1 26 0 596 209 187 7 chr9 90206960 90207076 -27655551 + MER8 DNA MER2_type 93 239 0 796 278 64 38 chr9 90207141 90207674 -27654953 + L1ME1 LINE L1 1337 1883 -4513 3289 200 58 9 chr9 90207692 90208486 -27654141 + L1MB7 LINE L1 5254 6086 -98 592 181 29 0 chr9 90208505 90208610 -27654017 - FLAM_A SINE Alu -27 115 8 346 154 143 0 chr9 90208610 90208701 -27653926 + L1MB7 LINE L1 6081 6184 0 3084 222 60 39 chr9 90208745 90210197 -27652430 + L1ME1 LINE L1 1949 3412 -2803 2777 227 87 26 chr9 90210257 90210464 -27652163 + L1ME1 LINE L1 4978 5171 -1064 2839 116 67 61 chr9 90210464 90210844 -27651783 + LTR64 LTR ERVK 1 377 -136 402 0 20 0 chr9 90210844 90210893 -27651734 + (TTG)n Simple_repeat Simple_repeat 2 180 0 2114 74 67 0 chr9 90210893 90211162 -27651465 - AluSp SINE Alu -26 287 1 2839 116 67 61 chr9 90211162 90211288 -27651339 + LTR64 LTR ERVK 376 511 -2 2777 227 87 26 chr9 90211288 90212268 -27650359 + L1ME1 LINE L1 5171 6234 -1 1746 57 0 5 chr9 90212398 90212609 -27650018 - L1PA6 LINE L1 -4 6150 5941 282 275 44 0 chr9 90212631 90212722 -27649905 - L1MC4 LINE L1 -428 7614 7520 882 244 61 8 chr9 90212929 90213175 -27649452 + L1MC4 LINE L1 6721 6979 -1063 1995 266 67 6 chr9 90213228 90213855 -27648772 + L1MC4 LINE L1 7238 7902 -140 210 241 19 0 chr9 90213905 90213959 -27648668 + GA-rich Low_complexity Low_complexity 1 55 0 780 188 0 21 chr9 90215545 90215689 -27646938 + FLAM_C SINE Alu 2 142 -1 278 339 15 15 chr9 90217088 90217218 -27645409 + MER5A DNA MER1_type 60 189 0 1001 174 21 32 chr9 90217226 90217416 -27645211 - MER5A DNA MER1_type 0 189 2 21 0 0 0 chr9 90217472 90217493 -27645134 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr9 90217598 90217624 -27645003 + AT_rich Low_complexity Low_complexity 1 26 0 1303 168 64 124 chr9 90218760 90219002 -27643625 - MLT1A1 LTR MaLR 0 365 153 1513 164 29 29 chr9 90219002 90219277 -27643350 - AluJo SINE Alu -32 280 6 1303 168 64 124 chr9 90219277 90219422 -27643205 - MLT1A1 LTR MaLR -212 153 1 366 331 20 34 chr9 90219742 90219890 -27642737 + MER91A DNA MER1_type 1 146 -50 259 197 70 28 chr9 90219976 90220047 -27642580 - MER3 DNA MER1_type -135 74 1 391 322 45 5 chr9 90220353 90220552 -27642075 + L1ME LINE L1 4055 4261 -1885 319 256 73 18 chr9 90220542 90220706 -27641921 + L1ME LINE L1 4627 4799 -1347 * 850 186 0 0 chr9 90222126 90222266 -27640361 + FLAM_C SINE Alu 1 140 -3 644 287 153 33 chr9 90223530 90224105 -27638522 + L2 LINE L2 1614 2257 -1057 1720 185 34 3 chr9 90224148 90224445 -27638182 + AluJb SINE Alu 1 306 -6 1744 133 102 7 chr9 90224561 90224846 -27637781 + AluJb SINE Alu 1 312 0 254 325 86 17 chr9 90225239 90225356 -27637271 + L2 LINE L2 3147 3271 -1 2307 151 22 92 chr9 90226108 90226564 -27636063 + MSTA LTR MaLR 5 428 0 418 291 90 46 chr9 90226720 90227129 -27635498 + L1ME LINE L1 5309 5741 -380 2299 106 0 0 chr9 90227162 90227455 -27635172 + AluSx SINE Alu 2 294 -18 1173 260 63 103 chr9 90227808 90228658 -27633969 + L1MEd LINE L1 299 1114 -5005 23 68 0 0 chr9 90228915 90228959 -27633668 + AT_rich Low_complexity Low_complexity 1 44 0 441 66 0 0 chr9 90229268 90229329 -27633298 + (TA)n Simple_repeat Simple_repeat 2 62 0 504 315 142 39 chr9 90230525 90231011 -27631616 - L3 LINE CR1 -1 1576 1041 1762 184 0 3 chr9 90231237 90231543 -27631084 + AluJo SINE Alu 1 305 0 246 387 24 0 chr9 90231543 90231667 -27630960 + MER5A DNA MER1_type 63 189 0 354 171 0 0 chr9 90231702 90231772 -27630855 + (CA)n Simple_repeat Simple_repeat 2 71 0 183 115 0 58 chr9 90232069 90232121 -27630506 + (GGAAA)n Simple_repeat Simple_repeat 2 50 0 217 260 80 0 chr9 90233007 90233057 -27629570 - L3 LINE CR1 -13 1564 1511 388 243 151 26 chr9 90233808 90233960 -27628667 - MER5B DNA MER1_type -7 171 1 2412 156 21 5 chr9 90234124 90234508 -27628119 + MLT1B LTR MaLR 1 390 0 1195 162 30 81 chr9 90234721 90235018 -27627609 + L1MA7 LINE L1 5903 6184 -107 237 329 70 62 chr9 90235245 90235488 -27627139 + L2 LINE L2 2857 3101 -171 260 236 0 0 chr9 90235525 90235580 -27627047 - Charlie8 DNA MER1_type -5 2412 2358 187 266 0 141 chr9 90236689 90236753 -27625874 - L3 LINE CR1 -119 1458 1404 2371 94 3 0 chr9 90237009 90237317 -27625310 + AluSc SINE Alu 1 309 0 499 304 22 11 chr9 90237541 90237725 -27624902 + L1ME LINE L1 5523 5708 -413 250 184 138 23 chr9 90237876 90237963 -27624664 + HAL1b LINE L1 1236 1332 -16 242 220 98 53 chr9 90238076 90238208 -27624419 + L1ME LINE L1 5683 5820 -301 709 150 115 0 chr9 90238460 90238573 -27624054 + FLAM_C SINE Alu 2 127 -16 1490 214 52 46 chr9 90238831 90238863 -27623764 - MLT1B LTR MaLR 0 390 360 2006 62 0 31 chr9 90238863 90239122 -27623505 + AluY SINE Alu 39 289 -22 1490 214 52 46 chr9 90239122 90239477 -27623150 - MLT1B LTR MaLR -30 360 1 634 132 84 19 chr9 90240394 90240600 -27622027 + L1MA9 LINE L1 5981 6312 0 2364 90 0 10 chr9 90240948 90241259 -27621368 + AluSx SINE Alu 1 308 -4 208 293 114 32 chr9 90241546 90241669 -27620958 - MIR3 SINE MIR -54 154 22 23 33 0 0 chr9 90241924 90241954 -27620673 + AT_rich Low_complexity Low_complexity 1 30 0 2498 58 7 10 chr9 90242039 90242347 -27620280 + AluY SINE Alu 2 308 -3 313 319 115 33 chr9 90242663 90242933 -27619694 + L2 LINE L2 3022 3313 0 361 219 189 66 chr9 90242969 90243197 -27619430 - MER112 DNA MER1_type 0 256 1 396 231 13 0 chr9 90243509 90243587 -27619040 - MER116 DNA Mariner 0 80 2 307 277 0 30 chr9 90243628 90243729 -27618898 - L1MC4 LINE L1 -1331 6711 6614 336 231 0 0 chr9 90243736 90243840 -27618787 + (TA)n Simple_repeat Simple_repeat 1 104 0 14363 95 13 1 chr9 90243847 90246476 -27616151 - L1PA7 LINE L1 -18 6136 3473 1049 217 55 0 chr9 90246549 90246599 -27616028 + AluJo SINE Alu 75 121 -191 234 0 0 0 chr9 90246599 90246625 -27616002 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1049 217 55 0 chr9 90246625 90246791 -27615836 + AluJo SINE Alu 121 303 -9 387 278 57 57 chr9 90246859 90247035 -27615592 - L2 LINE L2 -188 3125 2950 240 35 0 0 chr9 90247155 90247184 -27615443 + (A)n Simple_repeat Simple_repeat 1 29 0 773 126 0 0 chr9 90247402 90247505 -27615122 - AluSx SINE Alu -14 295 193 1067 138 0 0 chr9 90247506 90247651 -27614976 - AluSx SINE Alu -167 146 2 203 320 40 20 chr9 90248491 90248591 -27614036 + L2 LINE L2 2242 2343 -971 2037 123 30 13 chr9 90249038 90249340 -27613287 + AluSx SINE Alu 1 307 -5 232 310 11 0 chr9 90250169 90250256 -27612371 + (CATATA)n Simple_repeat Simple_repeat 6 93 0 880 157 0 15 chr9 90250545 90250717 -27611910 + FLAM_C SINE Alu 2 171 0 828 201 107 0 chr9 90250718 90250877 -27611750 + AluJb SINE Alu 121 296 -16 198 229 14 100 chr9 90251260 90251330 -27611297 + L2 LINE L2 3192 3255 -58 379 218 113 135 chr9 90251573 90251802 -27610825 + L2 LINE L2 3033 3256 -16 2317 101 0 16 chr9 90252806 90253122 -27609505 - AluSx SINE Alu -1 311 1 1862 143 10 14 chr9 90254499 90254793 -27607834 - AluJo SINE Alu -19 293 1 203 221 47 126 chr9 90255828 90256018 -27606609 - MIR3 SINE MIR -25 183 9 379 259 113 111 chr9 90257017 90257695 -27604932 + L1M4 LINE L1 709 1405 -5444 202 62 125 0 chr9 90260202 90260234 -27602393 + MIR SINE MIR 124 159 -103 842 159 14 14 chr9 90260570 90260715 -27601912 + FRAM SINE Alu 7 151 -25 23 0 0 0 chr9 90260716 90260739 -27601888 + AT_rich Low_complexity Low_complexity 1 23 0 1891 138 7 34 chr9 90260757 90261054 -27601573 + AluSx SINE Alu 1 289 -23 363 287 20 1 chr9 90261962 90262082 -27600545 + L1M4 LINE L1 3852 3973 -2875 25 65 0 0 chr9 90262181 90262227 -27600400 + AT_rich Low_complexity Low_complexity 1 46 0 2235 88 21 0 chr9 90262371 90262655 -27599972 - AluSp SINE Alu -23 290 1 24 106 0 0 chr9 90262780 90262874 -27599753 + AT_rich Low_complexity Low_complexity 1 94 0 475 311 83 18 chr9 90262907 90263184 -27599443 + L1M4 LINE L1 4252 4546 -2302 2135 104 28 0 chr9 90263186 90263474 -27599153 + AluSg SINE Alu 1 296 -14 350 269 21 0 chr9 90263474 90263556 -27599071 - L1MC4 LINE L1 -1341 6701 6615 326 300 0 0 chr9 90263477 90263567 -27599060 + L1MC4 LINE L1 6614 6703 -1339 * 251 158 21 74 chr9 90263661 90263756 -27598871 + L1MC4 LINE L1 6614 6703 -1339 537 321 63 20 chr9 90263806 90264155 -27598472 + L1M4 LINE L1 4659 5022 -1826 1045 224 98 73 chr9 90264308 90264826 -27597801 + LTR1B LTR ERV1 59 589 -237 2168 121 3 7 chr9 90264912 90265219 -27597408 - AluSx SINE Alu -6 306 1 382 311 95 69 chr9 90265359 90265664 -27596963 + L1M4 LINE L1 5279 5598 -1250 6634 62 4 29 chr9 90265664 90267133 -27595494 + L1PA13 LINE L1 4697 6162 -1 382 311 95 69 chr9 90267133 90267216 -27595411 + L1M4 LINE L1 5598 5677 -1171 597 55 0 0 chr9 90267462 90267535 -27595092 + L1PA7 LINE L1 6069 6141 -13 26 93 0 0 chr9 90267535 90267610 -27595017 + AT_rich Low_complexity Low_complexity 1 75 0 365 278 75 17 chr9 90268121 90268294 -27594333 + MLT1J1 LTR MaLR 76 258 -188 1022 210 64 11 chr9 90268734 90269015 -27593612 + L1ME2 LINE L1 5793 6088 -76 1896 141 17 3 chr9 90269141 90269438 -27593189 + AluSx SINE Alu 1 301 -11 628 143 0 0 chr9 90270492 90270583 -27592044 + AluJ/FLAM SINE Alu 1 91 -221 32 0 0 0 chr9 90270589 90270621 -27592006 + AT_rich Low_complexity Low_complexity 1 32 0 1918 175 34 13 chr9 90270634 90271016 -27591611 - MLT1B LTR MaLR 0 390 1 2085 135 0 0 chr9 90271597 90271885 -27590742 - AluSx SINE Alu -11 301 14 916 339 33 18 chr9 90271970 90273087 -27589540 + HERVL LTR ERVL 4104 5303 -461 265 304 103 16 chr9 90273538 90273732 -27588895 + LTR16A LTR ERVL 240 450 0 1598 206 13 20 chr9 90274087 90274388 -27588239 - AluJo SINE Alu -13 299 1 1902 187 3 3 chr9 90274480 90274833 -27587794 + MLT1A1 LTR MaLR 1 353 -12 193 305 0 0 chr9 90275410 90275469 -27587158 + L2 LINE L2 3214 3272 0 189 107 0 0 chr9 90275872 90275900 -27586727 + (A)n Simple_repeat Simple_repeat 1 28 0 594 134 0 118 chr9 90276367 90276494 -27586133 - FLAM_C SINE Alu -16 127 16 639 285 135 5 chr9 90276639 90276832 -27585795 - MIR SINE MIR -41 221 4 2532 54 0 0 chr9 90277041 90277336 -27585291 + AluY SINE Alu 1 295 -16 1151 151 0 3 chr9 90278100 90278323 -27584304 + AluJb SINE Alu 4 288 -24 314 309 113 0 chr9 90278391 90278585 -27584042 + MLT1K LTR MaLR 366 581 -7 673 263 110 76 chr9 90279024 90279496 -27583131 + MLT1J LTR MaLR 1 488 -23 294 120 40 27 chr9 90279641 90279716 -27582911 + GA-rich Low_complexity Low_complexity 3 78 0 186 206 41 14 chr9 90279768 90279841 -27582786 + GA-rich Low_complexity Low_complexity 3 77 0 251 133 80 0 chr9 90279893 90279968 -27582659 + GA-rich Low_complexity Low_complexity 3 83 0 530 355 62 8 chr9 90280437 90280679 -27581948 + MIR SINE MIR 8 262 0 711 217 49 36 chr9 90281229 90281357 -27581270 + L1MC5 LINE L1 7472 7597 -364 1843 192 0 0 chr9 90281357 90281659 -27580968 + AluJb SINE Alu 1 302 -10 711 217 49 36 chr9 90281659 90281834 -27580793 + L1MC5 LINE L1 7597 7779 -182 408 311 44 10 chr9 90281908 90282114 -27580513 + L1M4 LINE L1 2224 2436 -3710 21 71 0 0 chr9 90282275 90282317 -27580310 + AT_rich Low_complexity Low_complexity 1 42 0 1339 260 154 56 chr9 90282408 90283166 -27579461 - L2 LINE L2 -49 3264 2399 503 301 32 6 chr9 90285069 90285225 -27577402 + MER5A DNA MER1_type 30 189 0 1292 145 9 37 chr9 90285229 90285443 -27577184 + AluJb SINE Alu 84 291 -21 183 184 0 0 chr9 90285531 90285569 -27577058 + CT-rich Low_complexity Low_complexity 3 40 0 223 329 0 13 chr9 90285607 90285683 -27576944 + CT-rich Low_complexity Low_complexity 1 75 0 2295 105 0 0 chr9 90287422 90287726 -27574901 - AluSg SINE Alu -6 304 1 2365 87 0 3 chr9 90289405 90289705 -27572922 + AluY SINE Alu 1 299 -12 243 261 15 15 chr9 90289743 90289808 -27572819 + GA-rich Low_complexity Low_complexity 2 66 0 261 344 65 0 chr9 90289879 90289972 -27572655 - MIR SINE MIR -133 129 31 181 175 50 0 chr9 90290051 90290091 -27572536 + MIR3 SINE MIR 165 206 -2 287 242 12 31 chr9 90290461 90290471 -27572156 + (TTATA)n Simple_repeat Simple_repeat 4 13 -148 1817 134 76 0 chr9 90290471 90290746 -27571881 + AluSg SINE Alu 1 296 -14 287 242 12 31 chr9 90290746 90290896 -27571731 + (TTATA)n Simple_repeat Simple_repeat 13 161 0 25 51 0 0 chr9 90290925 90290964 -27571663 + AT_rich Low_complexity Low_complexity 1 39 0 5646 79 8 0 chr9 90291555 90292331 -27570296 - L1PA10 LINE L1 -10 6158 5377 1156 215 23 0 chr9 90292507 90292726 -27569901 + MER58A DNA MER1_type 1 224 0 560 301 17 11 chr9 90292734 90292910 -27569717 - MER5B DNA MER1_type 0 178 2 2338 167 39 5 chr9 90293600 90294014 -27568613 - MSTA LTR MaLR 0 428 1 2171 128 0 3 chr9 90294346 90294650 -27567977 + AluSx SINE Alu 1 303 -9 1837 110 40 40 chr9 90295594 90295893 -27566734 + AluSq SINE Alu 1 299 -14 611 161 9 27 chr9 90296009 90296121 -27566506 + FLAM_C SINE Alu 1 110 -33 201 74 0 0 chr9 90296125 90296152 -27566475 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 1364 184 7 3 chr9 90296649 90296942 -27565685 + L1MA4 LINE L1 5980 6273 -27 258 32 0 0 chr9 90296951 90296982 -27565645 + (TAAAA)n Simple_repeat Simple_repeat 4 34 0 466 316 98 0 chr9 90297041 90297215 -27565412 + MIR SINE MIR 61 251 -11 2019 127 3 0 chr9 90297224 90297507 -27565120 + AluSq SINE Alu 30 313 0 504 239 220 38 chr9 90298131 90298340 -27564287 - MIR SINE MIR -13 249 3 2588 55 0 0 chr9 90298404 90298715 -27563912 - AluY SINE Alu 0 311 1 7526 31 5 0 chr9 90298748 90300254 -27562373 - L1PA3 LINE L1 -2 6153 4646 9142 27 0 0 chr9 90300254 90301378 -27561249 + L1PA3 LINE L1 3537 4660 -1486 308 351 93 0 chr9 90301514 90301665 -27560962 - MIR SINE MIR 0 262 98 389 272 54 0 chr9 90302162 90302254 -27560373 + MIR SINE MIR 50 146 -62 366 323 23 15 chr9 90302394 90302527 -27560100 + MIR SINE MIR 31 164 -98 642 246 6 6 chr9 90302885 90303056 -27559571 + L1MEc LINE L1 49 219 -6177 433 43 14 14 chr9 90303106 90303175 -27559452 + (TTTTA)n Simple_repeat Simple_repeat 2 70 0 855 151 0 0 chr9 90303176 90303295 -27559332 - AluSq/x SINE Alu -193 119 1 239 286 44 0 chr9 90303306 90303397 -27559230 + L1MEc LINE L1 289 383 -6013 330 255 13 34 chr9 90303684 90303833 -27558794 + L1MEc LINE L1 673 818 -5578 3093 173 31 11 chr9 90303839 90304476 -27558151 + L1MB5 LINE L1 5392 6041 -133 1854 227 83 1 chr9 90304471 90305140 -27557487 - L1M4 LINE L1 -1016 5130 4314 * 310 162 0 0 chr9 90305303 90305371 -27557256 + L1MEc LINE L1 878 945 -5451 524 234 16 0 chr9 90305389 90305517 -27557110 - MLT1F1 LTR MaLR -2 565 436 1754 246 56 94 chr9 90305702 90305853 -27556774 + L1ME LINE L1 31 186 -5894 2178 145 30 0 chr9 90305853 90306190 -27556437 - MER7A DNA MER2_type 0 346 2 1754 246 56 94 chr9 90306190 90306463 -27556164 + L1ME LINE L1 186 468 -5612 1008 118 59 6 chr9 90306463 90306632 -27555995 + L1PA16 LINE L1 5980 6157 -9 1754 246 56 94 chr9 90306632 90307022 -27555605 + L1ME LINE L1 468 871 -5209 246 105 0 0 chr9 90307022 90307060 -27555567 + (TA)n Simple_repeat Simple_repeat 2 39 0 1754 246 56 94 chr9 90307060 90307860 -27554767 + L1ME LINE L1 871 1549 -4531 283 296 26 26 chr9 90307964 90308079 -27554548 + L1ME LINE L1 1597 1711 -4550 2071 155 10 0 chr9 90308118 90308422 -27554205 - AluJb SINE Alu 0 312 6 1456 248 53 62 chr9 90308508 90309448 -27553179 + L1ME LINE L1 1746 2675 -3405 2274 54 36 4 chr9 90309448 90309728 -27552899 + AluY SINE Alu 1 289 -22 1456 248 53 62 chr9 90309728 90309880 -27552747 + L1ME LINE L1 2675 2827 -3253 774 165 0 0 chr9 90309882 90309997 -27552630 + AluJo SINE Alu 1 115 -187 2512 106 20 13 chr9 90309997 90310392 -27552235 + MLT2A1 LTR ERVL 2 399 -45 279 173 0 0 chr9 90310411 90310463 -27552164 + (TA)n Simple_repeat Simple_repeat 1 52 0 396 19 38 0 chr9 90310463 90310516 -27552111 + MLT2A1 LTR ERVL 399 453 0 6369 68 7 0 chr9 90310516 90311356 -27551271 + HERVL-A1 LTR ERVL 1 846 -4808 2826 79 0 0 chr9 90311375 90311730 -27550897 - THE1A LTR MaLR 0 355 1 839 202 20 50 chr9 90311730 90311928 -27550699 + AluJo SINE Alu 110 301 -11 1405 181 48 18 chr9 90311935 90312377 -27550250 + L1ME LINE L1 2827 3281 -2799 1660 179 18 11 chr9 90312384 90312669 -27549958 + AluJb SINE Alu 1 287 -25 270 136 0 0 chr9 90312679 90312723 -27549904 + (GGAGAA)n Simple_repeat Simple_repeat 3 46 0 261 217 239 0 chr9 90312723 90312861 -27549766 + L1ME LINE L1 3267 3437 -2643 212 161 36 54 chr9 90312904 90312960 -27549667 + (CATA)n Simple_repeat Simple_repeat 2 56 0 744 218 0 0 chr9 90313416 90313549 -27549078 - FLAM_C SINE Alu -10 133 1 809 196 42 12 chr9 90315355 90315523 -27547104 - MER5B DNA MER1_type 0 178 6 473 190 314 0 chr9 90315543 90315680 -27546947 + MER5A DNA MER1_type 9 188 -1 558 189 0 228 chr9 90315723 90315951 -27546676 - MER5B DNA MER1_type -2 176 1 341 289 33 25 chr9 90316098 90316219 -27546408 - MER5A DNA MER1_type -67 122 1 598 71 71 0 chr9 90316599 90316683 -27545944 - HY4 scRNA scRNA -3 90 1 263 312 57 19 chr9 90316935 90317083 -27545544 + MIR SINE MIR 100 256 -6 1820 146 16 9 chr9 90317083 90317404 -27545223 - L1MC1 LINE L1 0 6333 6011 225 0 0 0 chr9 90318993 90319018 -27543609 + (T)n Simple_repeat Simple_repeat 1 25 0 306 0 0 0 chr9 90320379 90320413 -27542214 + (TG)n Simple_repeat Simple_repeat 2 35 0 2028 132 7 0 chr9 90320613 90320916 -27541711 - AluSx SINE Alu -7 305 1 277 368 81 40 chr9 90321059 90321355 -27541272 - L2 LINE L2 0 3272 2965 265 282 64 18 chr9 90321676 90321786 -27540841 - L2 LINE L2 -791 2523 2409 604 180 10 0 chr9 90321789 90321889 -27540738 + FLAM_C SINE Alu 3 103 -40 1960 170 34 28 chr9 90322699 90323087 -27539540 + MLT1B LTR MaLR 1 390 0 1283 164 9 23 chr9 90323092 90323104 -27539523 - AluJo SINE Alu -15 297 286 2199 125 3 0 chr9 90323104 90323408 -27539219 - AluSx SINE Alu 0 312 8 210 37 0 0 chr9 90323409 90323436 -27539191 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1283 164 9 23 chr9 90323436 90323635 -27538992 - AluJo SINE Alu -25 287 87 1918 149 4 0 chr9 90323650 90323931 -27538696 - AluSx SINE Alu -30 282 1 745 156 23 16 chr9 90324019 90324147 -27538480 - FLAM_C SINE Alu -14 129 1 198 0 0 0 chr9 90324147 90324169 -27538458 + (A)n Simple_repeat Simple_repeat 1 22 0 450 241 256 34 chr9 90324708 90324915 -27537712 + MIR SINE MIR 2 254 -8 1330 216 26 0 chr9 90324920 90325092 -27537535 - AluJb SINE Alu 0 301 118 195 100 0 0 chr9 90325092 90325122 -27537505 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 1330 216 26 0 chr9 90325122 90325238 -27537389 - AluJb SINE Alu -183 118 6 1363 215 52 64 chr9 90325920 90326386 -27536241 - MLT1C LTR MaLR 0 467 8 1918 158 10 0 chr9 90326406 90326704 -27535923 - AluJb SINE Alu -11 301 1 364 256 90 0 chr9 90327238 90327371 -27535256 - HAL1 LINE L1 -89 2418 2274 253 281 0 25 chr9 90327431 90327591 -27535036 + (CATA)n Simple_repeat Simple_repeat 4 159 0 269 263 0 0 chr9 90327592 90327672 -27534955 - HAL1 LINE L1 -287 2220 2141 1480 265 73 14 chr9 90327692 90328323 -27534304 - HAL1 LINE L1 -442 2065 1398 239 262 79 24 chr9 90328323 90328449 -27534178 - LTR33 LTR ERVL 0 521 389 403 259 0 22 chr9 90329065 90329200 -27533427 + HAL1 LINE L1 128 259 -2248 4610 178 90 31 chr9 90329933 90331155 -27531472 + Charlie1a DNA MER1_type 18 1311 -144 1726 138 7 60 chr9 90332107 90332405 -27530222 + AluJb SINE Alu 1 282 -30 207 69 0 0 chr9 90332408 90332437 -27530190 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 317 315 39 67 chr9 90333941 90333997 -27528630 + MIR SINE MIR 19 75 -187 2243 72 0 39 chr9 90333997 90334304 -27528323 - AluY SINE Alu -16 295 1 317 315 39 67 chr9 90334304 90334442 -27528185 + MIR SINE MIR 75 209 -53 287 296 130 19 chr9 90334891 90334999 -27527628 - MIR SINE MIR -138 124 5 2177 123 10 7 chr9 90335191 90335493 -27527134 - AluSc SINE Alu -6 303 1 23 0 0 0 chr9 90335683 90335706 -27526921 + AT_rich Low_complexity Low_complexity 1 23 0 991 150 5 65 chr9 90335734 90335824 -27526803 - MER2 DNA MER2_type -135 210 137 1942 150 0 13 chr9 90335824 90336137 -27526490 + AluSx SINE Alu 1 309 -3 991 150 5 65 chr9 90336137 90336246 -27526381 - MER2 DNA MER2_type -208 137 23 196 294 150 0 chr9 90336306 90336421 -27526206 - MIR SINE MIR -52 156 26 1862 215 26 10 chr9 90336708 90337098 -27525529 - MSTD LTR MaLR 0 396 1 787 151 5 61 chr9 90338252 90338272 -27524355 - FRAM SINE Alu -157 155 135 2652 102 3 3 chr9 90338272 90338634 -27523993 - THE1B LTR MaLR 0 364 3 10064 101 54 35 chr9 90338636 90340185 -27522442 - THE1B-int LTR MaLR 0 1580 3 2370 130 5 16 chr9 90340186 90340554 -27522073 - THE1B LTR MaLR 0 364 1 787 151 5 61 chr9 90340554 90340723 -27521904 - FRAM SINE Alu -177 135 1 195 42 0 0 chr9 90341179 90341203 -27521424 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 362 280 103 37 chr9 90341327 90341541 -27521086 + L1M4 LINE L1 2272 2499 -3647 338 318 95 0 chr9 90341910 90342036 -27520591 - HERVL LTR ERVL -1093 4561 4424 960 293 75 9 chr9 90342090 90342425 -27520202 - HERVL LTR ERVL -1440 4324 3968 590 300 44 49 chr9 90342472 90342709 -27519918 - HERVL LTR ERVL -2823 2831 2595 1626 148 22 19 chr9 90342709 90342980 -27519647 + AluSx SINE Alu 39 310 -2 590 300 44 49 chr9 90342980 90343129 -27519498 - HERVL LTR ERVL -3059 2595 2447 363 311 118 38 chr9 90343303 90343750 -27518877 - LTR33 LTR ERVL -1 520 17 2290 102 13 0 chr9 90343873 90344176 -27518451 - AluSx SINE Alu -5 307 1 243 0 0 0 chr9 90344185 90344212 -27518415 + (T)n Simple_repeat Simple_repeat 1 27 0 7206 34 16 0 chr9 90344230 90345265 -27517362 - L1PA5 LINE L1 -4 6150 5094 1780 144 77 3 chr9 90346130 90346415 -27516212 + AluSx SINE Alu 1 306 -6 599 225 30 52 chr9 90347285 90347501 -27515126 - MIR SINE MIR 0 262 49 275 103 0 0 chr9 90347952 90347991 -27514636 - MER4D LTR ERV1 -74 829 791 384 309 143 48 chr9 90348065 90348430 -27514197 + MLT1L LTR MaLR 142 471 -144 3353 61 32 5 chr9 90348430 90348871 -27513756 - L1PA7 LINE L1 -5 6149 5697 1841 169 7 10 chr9 90348875 90349177 -27513450 - AluJb SINE Alu -11 301 1 384 309 143 48 chr9 90349177 90349239 -27513388 + MLT1L LTR MaLR 473 615 0 339 320 55 39 chr9 90349455 90349583 -27513044 - L2 LINE L2 0 3272 3143 38 22 0 0 chr9 90349730 90349775 -27512852 + AT_rich Low_complexity Low_complexity 1 45 0 209 365 110 48 chr9 90350253 90350982 -27511645 - L2 LINE L2 -2119 1195 422 860 234 0 0 chr9 90350989 90351164 -27511463 + AluJb SINE Alu 137 311 -1 1881 139 33 0 chr9 90351427 90351728 -27510899 - AluSx SINE Alu 0 310 1 378 214 95 0 chr9 90351870 90351954 -27510673 - MIR SINE MIR -69 193 102 373 387 12 8 chr9 90352230 90352483 -27510144 + L1MEc LINE L1 85 338 -6058 1049 279 50 47 chr9 90352833 90353009 -27509618 + L1MEc LINE L1 1301 1475 -4921 2009 120 21 3 chr9 90353009 90353300 -27509327 + AluSx SINE Alu 1 296 -16 1049 279 50 47 chr9 90353300 90353652 -27508975 + L1MEc LINE L1 1475 1834 -4562 2202 49 83 10 chr9 90353652 90353940 -27508687 - AluY SINE Alu -2 309 1 1049 279 50 47 chr9 90353940 90354052 -27508575 + L1MEc LINE L1 1834 1944 -4452 316 143 0 71 chr9 90354061 90354131 -27508496 + L1MB7 LINE L1 4359 4423 -1723 2174 76 0 0 chr9 90354131 90354407 -27508220 - AluY SINE Alu -6 305 30 1981 118 16 23 chr9 90354536 90354842 -27507785 + AluSq SINE Alu 1 304 -9 358 154 39 87 chr9 90354858 90354962 -27507665 + L1MB7 LINE L1 4454 4552 -1594 295 85 43 0 chr9 90354963 90355010 -27507617 + AluJo SINE Alu 88 136 -166 3750 172 45 54 chr9 90355019 90355183 -27507444 + L1MB7 LINE L1 4541 4705 -1479 916 200 0 24 chr9 90355183 90355353 -27507274 + AluJo SINE Alu 137 302 0 3750 172 45 54 chr9 90355353 90356048 -27506579 + L1MB7 LINE L1 4705 5405 -779 1479 163 0 45 chr9 90356048 90356312 -27506315 + AluSx SINE Alu 3 254 -58 3750 172 45 54 chr9 90356312 90357092 -27505535 + L1MB7 LINE L1 5405 6165 -19 379 259 38 15 chr9 90357141 90357272 -27505355 + L1M4 LINE L1 4526 4659 -1487 24 32 0 0 chr9 90357408 90357439 -27505188 + AT_rich Low_complexity Low_complexity 1 31 0 1701 167 8 37 chr9 90357447 90357626 -27505001 - MER2 DNA MER2_type 0 345 179 1082 23 8 0 chr9 90357626 90357758 -27504869 - L1PA4 LINE L1 -3 6152 6020 1701 167 8 37 chr9 90357758 90357931 -27504696 - MER2 DNA MER2_type -166 179 3 953 313 107 22 chr9 90358027 90358561 -27504066 - L3 LINE CR1 -355 1222 644 277 344 70 31 chr9 90358654 90358782 -27503845 - MER5A DNA MER1_type 0 189 57 261 252 137 34 chr9 90359447 90359681 -27502946 + L1ME4a LINE L1 5725 5982 -139 1757 167 14 4 chr9 90360062 90360343 -27502284 + AluJo SINE Alu 1 284 -28 28 29 0 0 chr9 90360349 90360384 -27502243 + AT_rich Low_complexity Low_complexity 1 35 0 619 237 8 0 chr9 90360463 90360581 -27502046 - FLAM_C SINE Alu -24 119 1 2816 184 52 9 chr9 90360662 90361201 -27501426 - MER68 LTR ERV1 0 562 1 1914 160 0 31 chr9 90361338 90361656 -27500971 - AluJb SINE Alu -4 308 1 302 213 142 32 chr9 90361744 90361899 -27500728 - L1ME4a LINE L1 -12 6109 5938 229 231 51 0 chr9 90361899 90361977 -27500650 + (TA)n Simple_repeat Simple_repeat 2 83 0 263 344 69 32 chr9 90362166 90362355 -27500272 + L2 LINE L2 2736 2931 -383 286 256 88 16 chr9 90362455 90362580 -27500047 + L2 LINE L2 3180 3313 0 23 0 0 0 chr9 90364067 90364090 -27498537 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr9 90364323 90364358 -27498269 + AT_rich Low_complexity Low_complexity 1 35 0 229 268 24 12 chr9 90364646 90364728 -27497899 + L1ME2 LINE L1 5691 5773 -348 442 206 27 137 chr9 90366156 90366261 -27496366 + L1ME2 LINE L1 5960 6032 -132 2111 131 0 0 chr9 90366261 90366587 -27496040 - AluY SINE Alu 0 326 1 442 206 27 137 chr9 90366587 90366698 -27495929 + L1ME2 LINE L1 6032 6154 -10 259 260 81 32 chr9 90367225 90367348 -27495279 - LTR67 LTR ERVL -1 556 428 320 340 21 43 chr9 90368701 90368842 -27493785 + MIR SINE MIR 53 190 -72 21 36 0 0 chr9 90368910 90368938 -27493689 + AT_rich Low_complexity Low_complexity 1 28 0 25 51 0 0 chr9 90368978 90369017 -27493610 + AT_rich Low_complexity Low_complexity 1 39 0 30 27 0 0 chr9 90369035 90369072 -27493555 + AT_rich Low_complexity Low_complexity 1 37 0 230 302 16 16 chr9 90369448 90369511 -27493116 + MIR SINE MIR 12 74 -188 2003 173 0 0 chr9 90369642 90369943 -27492684 + AluJb SINE Alu 1 301 -11 28 48 0 0 chr9 90369946 90369988 -27492639 + AT_rich Low_complexity Low_complexity 1 42 0 318 160 33 31 chr9 90370029 90370456 -27492171 + (TA)n Simple_repeat Simple_repeat 1 428 0 1907 139 11 14 chr9 90370780 90371061 -27491566 - AluJb SINE Alu -30 282 3 46 33 0 0 chr9 90371082 90371142 -27491485 + AT_rich Low_complexity Low_complexity 1 60 0 21 0 0 0 chr9 90371225 90371246 -27491381 + AT_rich Low_complexity Low_complexity 1 21 0 542 97 0 52 chr9 90371646 90371780 -27490847 + (GGA)n Simple_repeat Simple_repeat 2 128 0 373 141 55 31 chr9 90371882 90372010 -27490617 + GA-rich Low_complexity Low_complexity 5 135 0 534 311 27 36 chr9 90373378 90373597 -27489030 + LTR16A LTR ERVL 1 217 -233 2122 141 0 0 chr9 90373782 90374086 -27488541 + AluSx SINE Alu 1 304 -8 252 279 48 0 chr9 90374230 90374334 -27488293 + L1 LINE L1 4561 4669 -1477 263 337 11 11 chr9 90374571 90374666 -27487961 - MLT1G1 LTR MaLR -50 545 451 896 185 6 0 chr9 90374703 90374860 -27487767 - FRAM SINE Alu -18 158 1 767 325 55 18 chr9 90374862 90375542 -27487085 + L1ME LINE L1 3626 4346 -1800 2217 57 0 4 chr9 90375652 90375917 -27486710 - AluY SINE Alu -15 296 33 328 302 114 39 chr9 90376107 90376140 -27486487 + L1ME LINE L1 5255 5284 -837 1201 167 43 26 chr9 90376140 90376373 -27486254 + MER8 DNA MER2_type 3 239 0 328 302 114 39 chr9 90376373 90376721 -27485906 + L1ME LINE L1 5284 5662 -459 225 132 0 0 chr9 90376721 90376759 -27485868 + (TG)n Simple_repeat Simple_repeat 2 39 0 1879 275 67 25 chr9 90378257 90378403 -27484224 + L2 LINE L2 1204 1342 -1972 1780 176 7 7 chr9 90378403 90378710 -27483917 + AluJo SINE Alu 1 307 -5 1879 275 67 25 chr9 90378710 90379233 -27483394 + L2 LINE L2 1342 1901 -1413 308 248 262 0 chr9 90379271 90379412 -27483215 + L2 LINE L2 3129 3306 -7 532 283 125 0 chr9 90381673 90381858 -27480769 + MIR SINE MIR 37 244 -18 2313 262 98 56 chr9 90384753 90386062 -27476565 + L1M2a LINE L1 1 1254 -5914 1077 58 13 7 chr9 90386062 90386217 -27476410 + (GAAA)n Simple_repeat Simple_repeat 1 156 0 2313 262 98 56 chr9 90386217 90386696 -27475931 + L1M2a LINE L1 1254 1712 -5456 5582 54 0 4 chr9 90386696 90387397 -27475230 + L1PA7 LINE L1 5457 6154 0 2313 262 98 56 chr9 90387397 90387778 -27474849 + L1M2a LINE L1 1712 2076 -5092 1837 142 4 0 chr9 90387778 90388038 -27474589 + AluSx SINE Alu 35 295 -17 2313 262 98 56 chr9 90388038 90388117 -27474510 + L1M2a LINE L1 2076 3016 -4152 690 207 82 47 chr9 90388308 90388564 -27474063 + L1MA9 LINE L1 6010 6274 -38 365 270 154 14 chr9 90388643 90388899 -27473728 - L1M LINE L1 -754 5416 5123 299 255 138 31 chr9 90389315 90389511 -27473116 + L1ME3 LINE L1 17 233 -6190 310 223 15 92 chr9 90389829 90389959 -27472668 + L1ME3 LINE L1 1175 1294 -5129 21 0 0 0 chr9 90389959 90389980 -27472647 + AT_rich Low_complexity Low_complexity 1 21 0 417 146 232 0 chr9 90389991 90390073 -27472554 - U6 snRNA snRNA -6 101 1 613 104 38 9 chr9 90390390 90390496 -27472131 + L1MA8 LINE L1 6178 6286 -5 289 237 61 23 chr9 90390506 90390637 -27471990 + L1ME3 LINE L1 1738 1873 -5058 2861 252 75 63 chr9 90390722 90393316 -27469311 + L1ME3 LINE L1 4340 6957 0 242 276 90 8 chr9 90393403 90393537 -27469090 - L1M4 LINE L1 -1537 4609 4465 1809 132 25 18 chr9 90393948 90394228 -27468399 + AluSx SINE Alu 15 296 -16 588 286 113 33 chr9 90395181 90395482 -27467145 - MLT1J LTR MaLR -182 329 5 961 204 0 0 chr9 90395527 90395699 -27466928 - AluJo/FRAM SINE Alu -5 307 136 1902 146 42 0 chr9 90395701 90395989 -27466638 - AluSx SINE Alu -12 300 1 22 35 0 0 chr9 90395989 90396018 -27466609 + AT_rich Low_complexity Low_complexity 1 29 0 24 53 0 0 chr9 90396039 90396077 -27466550 + AT_rich Low_complexity Low_complexity 1 38 0 2252 109 3 0 chr9 90396097 90396399 -27466228 - AluSq SINE Alu -10 303 1 29 28 0 0 chr9 90396785 90396821 -27465806 + AT_rich Low_complexity Low_complexity 1 36 0 32 98 0 0 chr9 90397004 90397106 -27465521 + AT_rich Low_complexity Low_complexity 1 102 0 339 65 0 0 chr9 90397627 90397673 -27464954 + (TG)n Simple_repeat Simple_repeat 2 47 0 413 136 28 182 chr9 90397940 90398116 -27464511 + MER104 DNA Tc2 31 179 -1 180 361 21 41 chr9 90399084 90399181 -27463446 - MIR3 SINE MIR -109 99 5 269 200 0 0 chr9 90401151 90401206 -27461421 + LTR67 LTR ERVL 486 540 -17 1774 94 51 14 chr9 90401316 90401592 -27461035 + L1MA1 LINE L1 6017 6302 0 5431 147 21 19 chr9 90401605 90403378 -27459249 - L1PB1 LINE L1 0 6151 4377 498 152 0 22 chr9 90403498 90403590 -27459037 - MER7A DNA MER2_type 0 336 247 943 249 68 61 chr9 90403592 90403919 -27458708 + LTR56 LTR ERV1 1 333 -112 1521 121 0 14 chr9 90403919 90404142 -27458485 + AluSg/x SINE Alu 88 307 -3 943 249 68 61 chr9 90404142 90404255 -27458372 + LTR56 LTR ERV1 333 444 -1 1654 140 12 0 chr9 90404277 90404534 -27458093 - MER7A DNA MER2_type -88 258 1 4180 163 24 1 chr9 90405197 90405878 -27456749 - MER44D DNA MER2_type -1 604 37 2071 286 93 41 chr9 90405956 90407338 -27455289 - L1MC4 LINE L1 -18 8024 6410 2042 139 0 13 chr9 90407338 90407640 -27454987 - AluSx SINE Alu -14 298 1 2071 286 93 41 chr9 90407640 90408017 -27454610 - L1MC4 LINE L1 -1632 6410 6054 2518 60 0 13 chr9 90408025 90408340 -27454287 - AluY SINE Alu 0 311 1 1044 267 131 10 chr9 90408408 90408722 -27453905 - L1MC4 LINE L1 -2017 5791 5416 1528 171 84 12 chr9 90408722 90409043 -27453584 + MER2 DNA MER2_type 1 344 0 1044 267 131 10 chr9 90409043 90409132 -27453495 - L1MC4 LINE L1 -2392 5416 5339 32 20 0 20 chr9 90409203 90409232 -27453395 + AT_rich Low_complexity Low_complexity 1 30 -19 2423 45 7 3 chr9 90409232 90409519 -27453108 - AluY SINE Alu -23 288 1 32 20 0 20 chr9 90409519 90409539 -27453088 + AT_rich Low_complexity Low_complexity 30 49 0 478 290 67 30 chr9 90409593 90409890 -27452737 - L1MC4a LINE L1 -1814 5994 5687 1000 199 46 37 chr9 90410201 90410405 -27452222 + MER20 DNA MER1_type 2 210 -9 3602 109 21 0 chr9 90410405 90410929 -27451698 - L1PA15 LINE L1 -4 6161 5627 1000 199 46 37 chr9 90410929 90410940 -27451687 + MER20 DNA MER1_type 210 219 0 21 0 0 0 chr9 90411056 90411077 -27451550 + AT_rich Low_complexity Low_complexity 1 21 0 2560 65 0 3 chr9 90411295 90411605 -27451022 - AluY SINE Alu -2 309 1 1863 155 3 10 chr9 90412468 90412771 -27449856 + AluJb SINE Alu 1 301 -11 1066 180 83 87 chr9 90413093 90413393 -27449234 + AluJo SINE Alu 2 300 -2 377 283 99 64 chr9 90413799 90414018 -27448609 + L1MC4a LINE L1 5412 5622 -2186 1334 46 6 12 chr9 90414018 90414191 -27448436 + L1PA6 LINE L1 5976 6147 -7 377 283 99 64 chr9 90414191 90414321 -27448306 + L1MC4a LINE L1 5622 5746 -2062 1792 181 33 9 chr9 90414321 90414657 -27447970 + MER2 DNA MER2_type 1 344 0 377 283 99 64 chr9 90414657 90414772 -27447855 + L1MC4a LINE L1 5746 5893 -1915 739 167 0 22 chr9 90415065 90415203 -27447424 + FLAM_C SINE Alu 1 135 -8 2236 97 0 3 chr9 90415297 90415595 -27447032 + AluSq SINE Alu 1 297 -16 203 0 37 0 chr9 90415599 90415626 -27447001 + (TG)n Simple_repeat Simple_repeat 1 28 0 184 253 114 25 chr9 90416283 90416362 -27446265 + MER5B DNA MER1_type 87 172 -6 1086 192 0 22 chr9 90416621 90416845 -27445782 - L1MA4A LINE L1 -12 6291 6073 290 222 30 101 chr9 90417399 90417498 -27445129 - L2 LINE L2 -8 3264 3173 239 278 0 0 chr9 90417923 90417977 -27444650 + L2 LINE L2 3201 3254 -18 684 192 33 0 chr9 90417977 90418097 -27444530 + Tigger3(Golem) DNA MER2_type 1 124 -2905 * 3353 152 100 13 chr9 90418072 90418764 -27443863 + Tigger3(Golem) DNA MER2_type 2278 3029 0 1718 178 0 4 chr9 90419421 90419702 -27442925 - AluJb SINE Alu -32 280 1 27 0 0 0 chr9 90420252 90420279 -27442348 + AT_rich Low_complexity Low_complexity 1 27 0 498 143 82 10 chr9 90420372 90420470 -27442157 - FRAM SINE Alu -61 115 11 2018 141 3 35 chr9 90420965 90421312 -27441315 - MER1B DNA MER1_type -1 336 1 425 254 132 56 chr9 90421542 90421607 -27441020 - MIR SINE MIR -33 229 170 378 0 0 0 chr9 90421607 90421649 -27440978 + (CAT)n Simple_repeat Simple_repeat 2 43 0 425 254 132 56 chr9 90421649 90421683 -27440944 - MIR SINE MIR -92 170 140 705 183 11 78 chr9 90421683 90421810 -27440817 + MER5B DNA MER1_type 1 112 -66 2332 89 3 0 chr9 90421810 90422112 -27440515 - AluSp SINE Alu -10 303 1 705 183 11 78 chr9 90422112 90422175 -27440452 + MER5B DNA MER1_type 112 178 0 425 254 132 56 chr9 90422175 90422287 -27440340 - MIR SINE MIR -122 140 1 432 186 0 0 chr9 90422548 90422634 -27439993 - L1ME3A LINE L1 -223 5947 5862 214 204 0 20 chr9 90422734 90422783 -27439844 + MER5B DNA MER1_type 131 178 0 220 319 55 11 chr9 90422805 90422896 -27439731 - MIR SINE MIR -167 95 1 766 261 37 0 chr9 90423157 90423375 -27439252 - L1ME3A LINE L1 -223 5947 5722 1617 124 39 0 chr9 90423445 90423727 -27438900 - L1MA8 LINE L1 -6 6285 5993 392 48 16 63 chr9 90423792 90423855 -27438772 - MADE1 DNA Mariner 0 80 21 1158 281 122 21 chr9 90423862 90424117 -27438510 - L1ME3A LINE L1 -629 5541 5313 1865 167 0 0 chr9 90424117 90424404 -27438223 - AluJo SINE Alu -16 296 10 1158 281 122 21 chr9 90424404 90425155 -27437472 - L1ME3A LINE L1 -857 5313 4430 1511 287 146 23 chr9 90425265 90427230 -27435397 + L1ME3A LINE L1 3673 5873 -297 2448 76 0 0 chr9 90427560 90427863 -27434764 - AluY SINE Alu -8 303 1 4373 24 0 0 chr9 90427978 90428485 -27434142 - L1PA5 LINE L1 -4 6150 5644 771 277 117 53 chr9 90428541 90429054 -27433573 - MLT1H LTR MaLR 0 549 4 306 247 52 0 chr9 90429126 90429203 -27433424 - L2 LINE L2 -5 3308 3228 6628 38 0 0 chr9 90429723 90430514 -27432113 - L1PA4 LINE L1 -1 6154 5364 4479 34 9 0 chr9 90430512 90431069 -27431558 + L1PA4 LINE L1 4807 5368 -778 * 793 320 126 22 chr9 90431817 90432342 -27430285 - L2 LINE L2 -1 3312 2721 231 216 114 23 chr9 90432352 90432440 -27430187 - L1MEc LINE L1 -4451 1945 1850 1117 150 27 94 chr9 90432451 90432850 -27429777 - L1MDa LINE L1 -3826 2714 2347 1358 183 102 102 chr9 90432860 90433152 -27429475 - L1MC4 LINE L1 0 8042 7748 2109 126 7 0 chr9 90433152 90433454 -27429173 + AluSx SINE Alu 1 304 -8 1358 183 102 102 chr9 90433454 90433690 -27428937 - L1MC4 LINE L1 -293 7749 7514 267 103 0 0 chr9 90433693 90433732 -27428895 + (TTCC)n Simple_repeat Simple_repeat 4 42 0 512 235 0 0 chr9 90433747 90433845 -27428782 - FLAM_A SINE Alu -44 98 1 698 235 57 27 chr9 90433888 90434186 -27428441 + L1ME4a LINE L1 5712 6018 -103 762 113 0 0 chr9 90434782 90434897 -27427730 + (TA)n Simple_repeat Simple_repeat 1 115 0 437 285 7 14 chr9 90434898 90435042 -27427585 - MIR SINE MIR -3 259 117 194 195 98 0 chr9 90435229 90435270 -27427357 - MIR SINE MIR -150 112 68 2254 67 0 25 chr9 90435488 90435773 -27426854 + AluY SINE Alu 1 278 -33 342 0 0 0 chr9 90435773 90435811 -27426816 + (CA)n Simple_repeat Simple_repeat 1 38 0 359 292 23 64 chr9 90436339 90436407 -27426220 + MIR SINE MIR 43 112 -150 1465 214 3 7 chr9 90436407 90436706 -27425921 - AluJo SINE Alu -12 300 3 359 292 23 64 chr9 90436706 90436808 -27425819 + MIR SINE MIR 112 206 -56 11414 175 30 21 chr9 90437805 90438481 -27424146 + L1PB2 LINE L1 2745 3413 -2738 1916 149 3 23 chr9 90438481 90438606 -27424021 + AluJb SINE Alu 1 127 -185 315 0 0 0 chr9 90438606 90438641 -27423986 + (TG)n Simple_repeat Simple_repeat 2 36 0 1916 149 3 23 chr9 90438641 90438823 -27423804 + AluJb SINE Alu 127 302 -10 11414 175 30 21 chr9 90438823 90441529 -27421098 + L1PB2 LINE L1 3413 6149 -2 22 0 0 0 chr9 90441696 90441718 -27420909 + AT_rich Low_complexity Low_complexity 1 22 0 446 213 52 37 chr9 90442764 90442900 -27419727 + L1ME2 LINE L1 5599 5736 -428 * 726 181 24 54 chr9 90442893 90443059 -27419568 + L1ME2 LINE L1 6003 6163 -1 731 231 72 17 chr9 90443417 90443662 -27418965 + MLT1D LTR MaLR 1 243 -224 633 162 19 0 chr9 90444149 90444254 -27418373 - L1PA8A LINE L1 -1 6130 6024 737 138 35 41 chr9 90444254 90444399 -27418228 - L1PA11 LINE L1 -112 6062 5919 361 313 11 6 chr9 90444774 90444953 -27417674 + L1MC4 LINE L1 7719 7898 -144 420 77 66 0 chr9 90444954 90445045 -27417582 + (TG)n Simple_repeat Simple_repeat 2 98 0 185 265 73 119 chr9 90445230 90445381 -27417246 + MIR SINE MIR 103 246 -16 180 111 0 0 chr9 90445865 90445892 -27416735 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 208 224 20 0 chr9 90445895 90445944 -27416683 - L2 LINE L2 0 3313 3264 745 153 29 7 chr9 90446067 90446204 -27416423 + L1PA15 LINE L1 6026 6165 0 249 261 92 92 chr9 90446393 90446535 -27416092 + MER5B DNA MER1_type 9 150 -28 421 152 0 2 chr9 90447781 90447855 -27414772 + MLT1F LTR MaLR 26 98 -457 13481 156 35 14 chr9 90447855 90449025 -27413602 - L1PA11 LINE L1 -1 7611 6466 2240 120 0 0 chr9 90449025 90449324 -27413303 - AluSx SINE Alu -13 299 1 13481 156 35 14 chr9 90449324 90451525 -27411102 - L1PA11 LINE L1 -1146 6466 4178 8826 223 30 27 chr9 90451529 90451550 -27411077 - L1PA11 LINE L1 -3373 4211 4192 16908 27 0 0 chr9 90451550 90454316 -27408311 - L1PA3 LINE L1 0 6155 3392 8826 223 30 27 chr9 90454316 90455354 -27407273 - L1PA11 LINE L1 -3392 4192 3158 2131 87 0 0 chr9 90455354 90455620 -27407007 + AluY SINE Alu 37 302 -9 8826 223 30 27 chr9 90455620 90457673 -27404954 - L1PA11 LINE L1 -4426 3158 20 958 252 72 34 chr9 90457701 90458118 -27404509 + MLT1F LTR MaLR 98 530 -12 623 266 161 67 chr9 90458952 90459203 -27403424 - L2 LINE L2 0 3313 3087 2438 168 41 53 chr9 90459203 90459318 -27403309 + MLT1D LTR MaLR 1 116 -389 2091 131 6 10 chr9 90459318 90459630 -27402997 - AluSx SINE Alu -1 311 1 2438 168 41 53 chr9 90459630 90460025 -27402602 + MLT1D LTR MaLR 116 505 0 623 266 161 67 chr9 90460025 90460265 -27402362 - L2 LINE L2 -226 3087 2752 1468 146 32 71 chr9 90460296 90460576 -27402051 + AluJb SINE Alu 34 302 -10 23 78 0 0 chr9 90461672 90461723 -27400904 + AT_rich Low_complexity Low_complexity 1 51 0 286 360 48 11 chr9 90461743 90461929 -27400698 - HAL1b LINE L1 -746 602 410 1782 210 40 85 chr9 90461971 90462500 -27400127 + MLT2B2 LTR ERVL 1 505 -10 1949 160 0 7 chr9 90463068 90463362 -27399265 - AluJo SINE Alu -20 292 1 35 54 0 0 chr9 90463476 90463532 -27399095 + AT_rich Low_complexity Low_complexity 1 56 0 22 70 0 0 chr9 90464105 90464148 -27398479 + AT_rich Low_complexity Low_complexity 1 43 0 6072 99 36 2 chr9 90464153 90465037 -27397590 - L1MA3 LINE L1 -2 6303 5390 21 57 0 0 chr9 90465299 90465334 -27397293 + AT_rich Low_complexity Low_complexity 1 35 0 2235 103 13 0 chr9 90465637 90465938 -27396689 - AluSx SINE Alu -7 305 1 1703 156 4 11 chr9 90466842 90467112 -27395515 + AluJb SINE Alu 36 303 -9 447 267 0 0 chr9 90467591 90467677 -27394950 + MIR SINE MIR 29 114 -148 415 170 312 0 chr9 90468413 90468554 -27394073 + L1PBa LINE L1 979 1163 -5700 701 184 0 0 chr9 90468571 90468707 -27393920 + L1PBa LINE L1 1332 1467 -5396 2885 219 11 4 chr9 90468710 90469455 -27393172 + L1 LINE L1 3271 4020 -2126 4897 100 27 3 chr9 90469578 90470325 -27392302 - L1MA3 LINE L1 -151 6154 5390 21 57 0 0 chr9 90470587 90470622 -27392005 + AT_rich Low_complexity Low_complexity 1 35 0 1566 110 23 0 chr9 90470925 90471144 -27391483 - AluSg/x SINE Alu -7 305 82 852 219 53 41 chr9 90471144 90471463 -27391164 - LTR56 LTR ERV1 -122 323 1 550 144 0 0 chr9 90471465 90471555 -27391072 + Tigger3(Golem) DNA MER2_type 2940 3029 0 2091 128 0 3 chr9 90471855 90472144 -27390483 + AluSx SINE Alu 1 288 -24 304 293 43 55 chr9 90472151 90472315 -27390312 + L1ME LINE L1 5658 5819 -302 276 174 0 0 chr9 90472343 90472389 -27390238 + AluSg/x SINE Alu 209 254 -46 356 376 50 2 chr9 90472463 90472645 -27389982 - MIR SINE MIR -64 144 3 1140 111 0 0 chr9 90473381 90473561 -27389066 + (TA)n Simple_repeat Simple_repeat 1 180 0 330 26 0 0 chr9 90473580 90473619 -27389008 + (CA)n Simple_repeat Simple_repeat 2 40 0 21 0 0 0 chr9 90473645 90473666 -27388961 + AT_rich Low_complexity Low_complexity 1 21 0 2476 99 28 39 chr9 90473946 90474310 -27388317 + THE1B LTR MaLR 3 362 -2 249 299 77 8 chr9 90474581 90474698 -27387929 + MLT1L LTR MaLR 397 521 -94 1972 181 6 3 chr9 90475259 90475623 -27387004 + MLT1A1 LTR MaLR 1 365 0 2173 114 56 22 chr9 90476478 90476837 -27385790 + THE1C LTR MaLR 1 371 -4 2162 179 0 11 chr9 90477083 90477452 -27385175 + MLT1A1 LTR MaLR 1 365 0 706 218 0 8 chr9 90477476 90477600 -27385027 + FLAM_A SINE Alu 1 123 -10 1811 180 3 3 chr9 90477600 90477894 -27384733 - AluJo SINE Alu -18 294 1 27 0 0 0 chr9 90477901 90477928 -27384699 + AT_rich Low_complexity Low_complexity 1 27 0 592 292 42 93 chr9 90477929 90478401 -27384226 - MLT1K LTR MaLR -16 572 125 229 81 0 0 chr9 90478657 90478694 -27383933 - MSTB1 LTR MaLR -37 395 359 541 210 76 0 chr9 90479016 90479135 -27383492 + FLAM_A SINE Alu 4 131 -2 590 365 89 23 chr9 90479136 90479841 -27382786 - L2 LINE L2 -2463 851 100 2236 136 89 7 chr9 90480544 90480971 -27381656 + L1MB8 LINE L1 5493 5954 -230 263 161 0 0 chr9 90480999 90481061 -27381566 + L1MB8 LINE L1 6113 6174 -4 2286 163 20 45 chr9 90481118 90481561 -27381066 - MSTB1 LTR MaLR 0 432 1 636 162 51 17 chr9 90482838 90482955 -27379672 - MER5B DNA MER1_type -19 159 39 2121 131 0 0 chr9 90482956 90483246 -27379381 + AluSx SINE Alu 1 290 -22 239 200 0 36 chr9 90483269 90483324 -27379303 - MER5B DNA MER1_type -125 53 1 1758 127 94 4 chr9 90483683 90483950 -27378677 + AluSx SINE Alu 5 295 -17 21 0 0 0 chr9 90485246 90485267 -27377360 + AT_rich Low_complexity Low_complexity 1 21 0 1823 88 0 0 chr9 90486045 90486295 -27376332 - L1PA13 LINE L1 -1 6162 5913 1894 147 44 33 chr9 90486460 90486820 -27375807 - THE1B LTR MaLR 0 364 1 11311 100 15 2 chr9 90486820 90488380 -27374247 - THE1B-int LTR MaLR 0 1580 1 2158 121 39 36 chr9 90488380 90488743 -27373884 - THE1B LTR MaLR 0 364 1 210 368 192 18 chr9 90488774 90489374 -27373253 + L2 LINE L2 2211 2914 -400 288 53 0 0 chr9 90489415 90489453 -27373174 + (A)n Simple_repeat Simple_repeat 1 38 0 350 239 57 0 chr9 90489483 90489571 -27373056 - MIR SINE MIR -48 214 122 1715 319 58 8 chr9 90490150 90490758 -27371869 + MER115 DNA AcHobo 56 693 0 203 186 47 23 chr9 90491115 90491158 -27371469 - MER91B DNA MER1_type -115 75 32 432 0 0 0 chr9 90491732 90491780 -27370847 + (ATG)n Simple_repeat Simple_repeat 1 48 0 402 318 15 8 chr9 90492188 90492320 -27370307 + L2 LINE L2 3179 3311 -2 220 343 96 0 chr9 90493328 90493401 -27369226 - L2 LINE L2 -5 3308 3229 1420 152 15 4 chr9 90493436 90493699 -27368928 + L1MD3 LINE L1 7730 7995 0 234 0 0 0 chr9 90494114 90494140 -27368487 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1464 160 60 25 chr9 90495001 90495282 -27367345 - AluJo SINE Alu -19 293 3 24 32 0 0 chr9 90495287 90495318 -27367309 + AT_rich Low_complexity Low_complexity 1 31 0 2221 111 0 10 chr9 90495328 90495626 -27367001 + AluSx SINE Alu 1 295 -17 1672 151 4 4 chr9 90495638 90495897 -27366730 + AluJo SINE Alu 37 295 -17 450 0 0 0 chr9 90495900 90495950 -27366677 + (TA)n Simple_repeat Simple_repeat 1 50 0 410 265 54 14 chr9 90495962 90496109 -27366518 - MLT1J LTR MaLR -354 157 5 340 336 28 0 chr9 90496156 90496263 -27366364 + L2 LINE L2 2236 2345 -969 711 276 131 53 chr9 90496271 90496723 -27365904 + MLT1J LTR MaLR 19 505 -6 343 324 141 24 chr9 90496788 90497203 -27365424 + L2 LINE L2 2456 2970 -343 1380 91 0 0 chr9 90497366 90497542 -27365085 - AluSg/x SINE Alu -51 261 86 1836 152 0 3 chr9 90497544 90497870 -27364757 - AluJb SINE Alu 0 325 1 194 353 107 41 chr9 90498510 90498632 -27363995 - MIR3 SINE MIR -22 186 57 385 333 108 34 chr9 90499398 90499807 -27362820 - L1ME4a LINE L1 -207 5914 5476 1753 194 0 19 chr9 90500391 90500700 -27361927 - AluJb SINE Alu -9 303 1 267 258 237 21 chr9 90500729 90500822 -27361805 - MIR SINE MIR -121 141 29 23 0 0 0 chr9 90500961 90500984 -27361643 + AT_rich Low_complexity Low_complexity 1 23 0 2051 110 0 0 chr9 90501626 90501918 -27360709 - L1PA13 LINE L1 -10 6153 5862 3713 141 16 3 chr9 90501921 90502963 -27359664 + L1PA13 LINE L1 4805 5862 -299 2178 116 0 3 chr9 90503143 90503437 -27359190 - AluSx SINE Alu -19 293 1 299 113 19 0 chr9 90503884 90503937 -27358690 + CT-rich Low_complexity Low_complexity 1 54 0 1955 100 22 4 chr9 90505012 90505110 -27357517 + AluSx SINE Alu 28 123 -189 315 0 0 0 chr9 90505110 90505145 -27357482 + (CA)n Simple_repeat Simple_repeat 2 36 0 1955 100 22 4 chr9 90505145 90505316 -27357311 + AluSx SINE Alu 123 302 -10 439 290 45 13 chr9 90505807 90505962 -27356665 + MIR3 SINE MIR 43 202 -6 249 242 40 89 chr9 90505998 90506122 -27356505 - MIR SINE MIR -50 212 95 1317 156 0 5 chr9 90507713 90507918 -27354709 - AluJo SINE Alu -4 308 105 1208 92 0 0 chr9 90507940 90508103 -27354524 + AluY SINE Alu 143 305 -6 207 296 68 61 chr9 90508115 90508247 -27354380 - MIR SINE MIR -128 134 2 367 200 22 22 chr9 90508355 90508445 -27354182 - MER5B DNA MER1_type -84 94 5 384 191 0 0 chr9 90508970 90509054 -27353573 + (TA)n Simple_repeat Simple_repeat 2 85 0 2022 157 0 3 chr9 90509109 90509415 -27353212 + AluJo SINE Alu 1 305 -7 2357 102 0 0 chr9 90509778 90510071 -27352556 + AluSx SINE Alu 5 297 -15 343 0 43 0 chr9 90510887 90510934 -27351693 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 564 308 136 56 chr9 90511230 90511973 -27350654 + HAL1b LINE L1 65 695 -653 25 49 0 33 chr9 90512144 90512169 -27350458 + AT_rich Low_complexity Low_complexity 1 25 -34 1608 181 35 7 chr9 90512169 90512451 -27350176 - AluJb SINE Alu -22 290 1 25 49 0 33 chr9 90512451 90512486 -27350141 + AT_rich Low_complexity Low_complexity 25 59 0 501 117 9 63 chr9 90512486 90512597 -27350030 + L1MA7 LINE L1 6187 6291 0 1039 257 57 71 chr9 90513282 90514002 -27348625 + L1MEd LINE L1 508 1217 -4902 261 310 69 41 chr9 90514018 90514330 -27348297 + L1MEd LINE L1 1296 1625 -4685 1230 190 73 0 chr9 90514330 90514630 -27347997 - MER33 DNA MER1_type 0 324 3 261 310 69 41 chr9 90514630 90514736 -27347891 + L1MEd LINE L1 1625 1726 -4584 1794 146 30 0 chr9 90514785 90515052 -27347575 + AluSx SINE Alu 1 275 -37 225 0 0 0 chr9 90515057 90515082 -27347545 + (TAAAA)n Simple_repeat Simple_repeat 4 28 0 319 261 68 11 chr9 90515291 90515379 -27347248 - L2 LINE L2 -333 2980 2888 521 307 28 20 chr9 90515764 90516015 -27346612 + LTR16A1 LTR ERVL 205 457 0 21 0 0 0 chr9 90517333 90517354 -27345273 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 90517603 90517625 -27345002 + AT_rich Low_complexity Low_complexity 1 22 0 226 197 0 16 chr9 90517645 90517706 -27344921 + L1M LINE L1 5317 5376 -2432 2043 170 0 0 chr9 90517718 90518030 -27344597 + AluJb SINE Alu 1 312 0 207 0 0 0 chr9 90518390 90518413 -27344214 + (CAAAAA)n Simple_repeat Simple_repeat 3 25 0 21 0 0 0 chr9 90518827 90518848 -27343779 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 90518896 90518917 -27343710 + AT_rich Low_complexity Low_complexity 1 21 0 263 240 40 0 chr9 90519182 90519257 -27343370 - MLT1G1 LTR MaLR -19 576 499 3163 134 2 16 chr9 90519695 90520253 -27342374 - L1P LINE L1 -888 5258 4709 965 206 0 0 chr9 90520454 90520609 -27342018 + AluJb SINE Alu 132 286 -26 31 26 0 0 chr9 90520615 90520653 -27341974 + AT_rich Low_complexity Low_complexity 1 38 0 4406 122 22 0 chr9 90521490 90522186 -27340441 + L1P LINE L1 2 712 -5434 610 216 124 60 chr9 90522394 90522612 -27340015 - MIR SINE MIR -13 249 18 719 263 50 6 chr9 90522982 90523161 -27339466 - MER5A DNA MER1_type -1 188 2 977 100 0 0 chr9 90523333 90523473 -27339154 + L1P LINE L1 1 140 -6006 3062 234 47 6 chr9 90523573 90524596 -27338031 - L1 LINE L1 -2453 3693 2629 1914 178 93 105 chr9 90524742 90525587 -27337040 + L1ME2 LINE L1 5320 6154 -10 323 266 0 0 chr9 90525636 90525730 -27336897 + L1ME LINE L1 3595 3688 -2458 293 206 108 0 chr9 90525964 90526066 -27336561 + L1ME LINE L1 5571 5683 -438 33 25 0 0 chr9 90526270 90526310 -27336317 + AT_rich Low_complexity Low_complexity 1 40 0 3895 150 13 15 chr9 90526403 90527116 -27335511 - L1MA7 LINE L1 -25 6266 5556 222 200 200 11 chr9 90527532 90527622 -27335005 - MIR SINE MIR -55 207 101 21 82 0 0 chr9 90527789 90527838 -27334789 + AT_rich Low_complexity Low_complexity 1 49 0 2861 49 5 11 chr9 90528961 90529330 -27333297 + L1PA8 LINE L1 5805 6171 -1 23 54 0 0 chr9 90530890 90530927 -27331700 + AT_rich Low_complexity Low_complexity 1 37 0 2420 132 9 21 chr9 90530969 90531401 -27331226 + L1MA3 LINE L1 5879 6305 0 327 286 44 0 chr9 90531482 90531573 -27331054 + MER5A DNA MER1_type 45 139 -50 1091 124 4 106 chr9 90531590 90531725 -27330902 - MLT1B LTR MaLR 0 390 286 2176 109 0 13 chr9 90531725 90532036 -27330591 - AluSg SINE Alu -3 307 1 1091 124 4 106 chr9 90532036 90532126 -27330501 - MLT1B LTR MaLR -104 286 188 401 77 0 0 chr9 90532177 90532229 -27330398 - Alu SINE Alu -258 52 1 683 167 17 0 chr9 90532613 90532733 -27329894 - MLT1B LTR MaLR -268 122 1 1858 166 0 0 chr9 90532959 90533249 -27329378 - AluJo SINE Alu -22 290 1 4215 39 0 0 chr9 90533270 90533778 -27328849 + L1PA5 LINE L1 5644 6151 -3 274 304 0 25 chr9 90534121 90534200 -27328427 - L3 LINE CR1 -519 1058 982 2132 95 7 36 chr9 90534925 90535230 -27327397 + AluSp SINE Alu 1 296 -17 590 290 12 24 chr9 90535357 90535526 -27327101 + MER5A DNA MER1_type 9 175 -14 685 228 73 116 chr9 90537219 90537600 -27325027 + MLT1A1 LTR MaLR 1 365 0 613 265 55 70 chr9 90537695 90538182 -27324445 + L1ME3A LINE L1 5414 5893 -277 450 258 19 7 chr9 90538539 90538694 -27323933 + L1M4 LINE L1 3543 3699 -2447 2366 104 26 16 chr9 90538694 90538947 -27323680 + L1MA4A LINE L1 5898 6158 -145 2238 82 4 0 chr9 90538947 90539228 -27323399 + AluSp SINE Alu 9 290 -23 2366 104 26 16 chr9 90539228 90539357 -27323270 + L1MA4A LINE L1 6158 6284 -19 395 216 90 42 chr9 90539445 90539612 -27323015 - L1M4 LINE L1 -2154 3992 3818 1813 144 18 0 chr9 90539613 90539918 -27322709 + AluJb SINE Alu 1 310 0 305 153 42 0 chr9 90540024 90540096 -27322531 - L1MB4 LINE L1 0 6180 6106 4962 146 36 3 chr9 90540129 90541714 -27320913 - L1MA4 LINE L1 -280 6020 4380 373 282 138 14 chr9 90541726 90542081 -27320546 - L1M4 LINE L1 -2415 3731 3333 3564 209 43 35 chr9 90542081 90542904 -27319723 - L1MB5 LINE L1 -8 6166 5331 1795 141 23 26 chr9 90542904 90543208 -27319419 - AluSx SINE Alu -9 303 1 3564 209 43 35 chr9 90543208 90543574 -27319053 - L1MB5 LINE L1 -843 5331 4969 193 144 65 14 chr9 90543574 90543713 -27318914 + (TA)n Simple_repeat Simple_repeat 2 147 0 204 182 81 20 chr9 90543747 90543895 -27318732 + (TA)n Simple_repeat Simple_repeat 2 158 0 2741 212 58 35 chr9 90543896 90544685 -27317942 - L1MB5 LINE L1 -1166 4980 4174 428 252 5 81 chr9 90544685 90544859 -27317768 + L1M4 LINE L1 3409 3564 -2582 2323 55 26 29 chr9 90544859 90545169 -27317458 + AluY SINE Alu 3 311 0 428 252 5 81 chr9 90545169 90545216 -27317411 + L1M4 LINE L1 3564 3613 -2533 317 246 0 0 chr9 90545221 90545290 -27317337 + FRAM SINE Alu 69 137 -29 1827 195 47 60 chr9 90545410 90545922 -27316705 + MLT1D LTR MaLR 1 505 0 1611 229 52 30 chr9 90545924 90546365 -27316262 + Charlie1a DNA MER1_type 18 473 -2288 2116 92 53 0 chr9 90546365 90546646 -27315981 - AluSp SINE Alu -17 296 1 1611 229 52 30 chr9 90546646 90546705 -27315922 + Charlie1a DNA MER1_type 473 529 -926 1185 260 20 69 chr9 90546708 90546981 -27315646 - L1MDb LINE L1 -5072 1337 1107 11477 24 0 0 chr9 90546981 90549088 -27313539 - L1PA3 LINE L1 0 6155 4046 1185 260 20 69 chr9 90549088 90549407 -27313220 - L1MDb LINE L1 -5302 1107 774 1374 328 56 38 chr9 90550166 90550879 -27311748 + L2 LINE L2 2032 2757 -557 2016 131 0 0 chr9 90550889 90551171 -27311456 - AluSx SINE Alu -30 282 1 25 0 0 0 chr9 90552003 90552028 -27310599 + AT_rich Low_complexity Low_complexity 1 25 0 7717 21 0 0 chr9 90552028 90552983 -27309644 - L1PA3 LINE L1 -3 6152 5198 433 18 0 0 chr9 90552983 90553038 -27309589 + L1PA3 LINE L1 5146 5200 -946 453 293 11 39 chr9 90553322 90553503 -27309124 - L2 LINE L2 -30 3283 3108 2268 107 7 0 chr9 90553506 90553805 -27308822 + AluSx SINE Alu 3 303 -9 243 346 87 0 chr9 90553873 90554000 -27308627 - L2 LINE L2 -491 2823 2686 208 200 20 20 chr9 90554195 90554245 -27308382 + (CATA)n Simple_repeat Simple_repeat 3 52 0 2216 115 0 3 chr9 90554876 90555172 -27307455 + AluSx SINE Alu 1 295 -17 1067 50 0 14 chr9 90555277 90555418 -27307209 - L1PA7 LINE L1 0 6154 6016 204 200 0 55 chr9 90555576 90555631 -27306996 + GA-rich Low_complexity Low_complexity 4 55 0 377 263 95 36 chr9 90555675 90555812 -27306815 + MER5A DNA MER1_type 2 146 -43 259 353 109 8 chr9 90556287 90556406 -27306221 + MIR SINE MIR 17 147 -61 218 266 0 47 chr9 90557961 90558025 -27304602 + L2 LINE L2 3251 3311 -2 1892 125 56 11 chr9 90558181 90558468 -27304159 + AluJb SINE Alu 1 300 -12 239 278 52 10 chr9 90558536 90558633 -27303994 + MARNA DNA Mariner 108 208 -378 30 69 0 0 chr9 90559212 90559270 -27303357 + AT_rich Low_complexity Low_complexity 1 58 0 27 49 0 0 chr9 90559484 90559525 -27303102 + AT_rich Low_complexity Low_complexity 1 41 0 2300 222 77 45 chr9 90560073 90560129 -27302498 + L1MC4 LINE L1 6718 6771 -1271 2153 109 0 0 chr9 90560129 90560435 -27302192 - AluSx SINE Alu 0 306 1 2300 222 77 45 chr9 90560435 90561197 -27301430 + L1MC4 LINE L1 6771 7563 -479 5091 86 26 32 chr9 90561201 90562016 -27300611 + L1PB1 LINE L1 5341 6150 -1 1216 213 49 18 chr9 90562054 90562383 -27300244 + L1MC4 LINE L1 7560 7898 -144 21 0 0 0 chr9 90562605 90562626 -27300001 + AT_rich Low_complexity Low_complexity 1 21 0 945 248 22 40 chr9 90562875 90563246 -27299381 + L1MC1 LINE L1 4206 4569 -1577 12276 97 11 44 chr9 90563251 90565661 -27296966 + L1PA7 LINE L1 6 2420 -4041 11430 55 1 0 chr9 90565661 90567104 -27295523 + HERV17 LTR ERV1 7183 8626 0 2565 56 0 0 chr9 90567104 90567428 -27295199 + LTR17 LTR ERV1 1 324 -456 22526 77 5 6 chr9 90567437 90570375 -27292252 + L1PA7 LINE L1 2403 5336 -1133 2245 68 40 24 chr9 90570375 90570671 -27291956 + AluY SINE Alu 1 301 -10 22526 77 5 6 chr9 90570671 90571805 -27290822 + L1PA7 LINE L1 5336 6469 0 311 187 33 44 chr9 90571824 90571915 -27290712 + L1MC1 LINE L1 4561 4650 -1496 4110 131 27 73 chr9 90571917 90572742 -27289885 + L1MC1 LINE L1 5547 6333 0 315 320 110 31 chr9 90572810 90573038 -27289589 - MIR SINE MIR -3 259 14 1173 151 83 23 chr9 90573078 90573296 -27289331 - AluJo SINE Alu -19 293 63 221 164 0 104 chr9 90573296 90573363 -27289264 + MIR SINE MIR 168 227 -35 414 272 37 29 chr9 90573463 90573599 -27289028 + MIR SINE MIR 111 247 -15 345 242 62 31 chr9 90573644 90573805 -27288822 + L1ME4a LINE L1 5726 5891 -230 186 43 0 0 chr9 90573835 90573858 -27288769 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2299 98 0 10 chr9 90574262 90574558 -27288069 + AluSg SINE Alu 1 293 -17 846 189 85 25 chr9 90575393 90575594 -27287033 + L1M4 LINE L1 805 1017 -5525 46 45 0 0 chr9 90575594 90575661 -27286966 + AT_rich Low_complexity Low_complexity 1 67 0 297 225 28 0 chr9 90575663 90575734 -27286893 + L1M4 LINE L1 1036 1108 -5438 863 226 37 46 chr9 90575735 90575756 -27286871 + L1M4 LINE L1 2895 2915 -3729 1572 80 0 84 chr9 90575756 90575995 -27286632 + AluSg/x SINE Alu 85 303 -9 863 226 37 46 chr9 90575995 90576296 -27286331 + L1M4 LINE L1 2915 3214 -3430 1046 268 44 31 chr9 90576308 90576409 -27286218 - L1ME3A LINE L1 -145 6019 5921 1636 182 34 3 chr9 90576409 90576706 -27285921 + AluJb SINE Alu 1 306 -6 1046 268 44 31 chr9 90576706 90577071 -27285556 - L1ME3A LINE L1 -243 5921 5542 299 161 25 62 chr9 90577101 90577182 -27285445 - MLT1G3 LTR MaLR -5 525 448 527 74 0 207 chr9 90577368 90577489 -27285138 - AluSg/x SINE Alu -132 180 85 333 229 0 0 chr9 90577511 90577581 -27285046 - L1M4b LINE L1 -5438 1421 1352 2355 83 3 0 chr9 90577674 90577963 -27284664 + AluSx SINE Alu 1 290 -22 2360 155 103 15 chr9 90578088 90578565 -27284062 + LTR44 LTR ERV1 1 519 0 324 0 0 0 chr9 90578593 90578629 -27283998 + (A)n Simple_repeat Simple_repeat 1 36 0 1655 233 140 3 chr9 90578902 90579468 -27283159 - L1ME1 LINE L1 -99 6067 5425 5891 207 57 71 chr9 90579586 90581099 -27281528 - L1MB8 LINE L1 0 6178 4646 2364 79 3 7 chr9 90581099 90581404 -27281223 - AluSc SINE Alu -5 304 1 5891 207 57 71 chr9 90581404 90582156 -27280471 - L1MB8 LINE L1 -1532 4646 3885 291 28 0 0 chr9 90582156 90582192 -27280435 + (TG)n Simple_repeat Simple_repeat 2 37 0 5891 207 57 71 chr9 90582192 90583132 -27279495 - L1MB8 LINE L1 -2293 3885 3063 1788 184 0 3 chr9 90583132 90583436 -27279191 - AluJo SINE Alu -7 305 3 5891 207 57 71 chr9 90583436 90583734 -27278893 - L1MB8 LINE L1 -3115 3063 2763 253 122 0 0 chr9 90583736 90583777 -27278850 - L1M4 LINE L1 -1542 4604 4564 653 175 0 0 chr9 90583829 90583943 -27278684 + L1MC1 LINE L1 6150 6263 -70 2066 141 3 13 chr9 90584318 90584631 -27277996 + AluJb SINE Alu 3 312 0 2199 88 3 3 chr9 90584632 90584915 -27277712 + AluSx SINE Alu 12 294 -18 3892 163 33 10 chr9 90584947 90585670 -27276957 - L1MC1 LINE L1 -2 6331 5592 198 91 0 0 chr9 90585772 90585805 -27276822 + (CAAAA)n Simple_repeat Simple_repeat 1 33 0 1202 248 132 59 chr9 90585843 90587044 -27275583 + L1ME LINE L1 140 1445 -4635 2045 133 3 7 chr9 90587353 90587647 -27274980 + AluSx SINE Alu 13 305 -7 308 271 81 97 chr9 90590004 90590262 -27272365 - MER112 DNA MER1_type -6 254 1 183 245 57 19 chr9 90591128 90591181 -27271446 + MIR3 SINE MIR 125 179 -29 261 135 0 0 chr9 90591687 90591739 -27270888 + (A)n Simple_repeat Simple_repeat 1 52 0 288 242 132 11 chr9 90592216 90592307 -27270320 + MIR SINE MIR 63 164 -98 34 65 0 0 chr9 90592881 90592943 -27269684 + AT_rich Low_complexity Low_complexity 1 62 0 2518 238 76 61 chr9 90593743 90594540 -27268087 + L1MC4 LINE L1 6842 7625 -417 1900 110 4 0 chr9 90594540 90594785 -27267842 + AluSx SINE Alu 42 287 -25 348 24 0 0 chr9 90594795 90594836 -27267791 + (CAT)n Simple_repeat Simple_repeat 1 41 0 2518 238 76 61 chr9 90594836 90594894 -27267733 + L1MC4 LINE L1 7633 7689 -353 1967 171 3 3 chr9 90594894 90595203 -27267424 + AluSx SINE Alu 1 309 -3 2518 238 76 61 chr9 90595203 90595518 -27267109 + L1MC4 LINE L1 7689 8042 0 189 195 0 0 chr9 90596215 90596256 -27266371 + GA-rich Low_complexity Low_complexity 2 42 0 1812 145 44 14 chr9 90597273 90597570 -27265057 + AluJo SINE Alu 2 307 -5 280 57 0 0 chr9 90597638 90597673 -27264954 + U2 snRNA snRNA 1 35 -153 1854 115 85 49 chr9 90597992 90598358 -27264269 + MLT1B LTR MaLR 1 379 -11 274 308 175 7 chr9 90598959 90599102 -27263525 - MIR3 SINE MIR -6 202 36 470 257 180 40 chr9 90599490 90599863 -27262764 + MLT1J LTR MaLR 79 503 -8 187 286 89 62 chr9 90600490 90600602 -27262025 - MIR3 SINE MIR -86 122 8 1828 166 0 3 chr9 90602259 90602565 -27260062 + AluJb SINE Alu 1 305 0 310 238 70 4 chr9 90603896 90604019 -27258608 + L1ME4a LINE L1 5707 5818 -303 386 228 47 27 chr9 90604029 90604178 -27258449 + L1ME4a LINE L1 5968 6119 -2 313 355 11 11 chr9 90606295 90606388 -27256239 + MIR3 SINE MIR 84 176 -32 209 323 193 4 chr9 90606468 90606602 -27256025 - MIR SINE MIR -74 188 32 26 0 0 0 chr9 90606797 90606823 -27255804 + AT_rich Low_complexity Low_complexity 1 26 0 2344 97 0 3 chr9 90607375 90607686 -27254941 + AluSg SINE Alu 1 310 0 306 208 13 0 chr9 90608552 90608629 -27253998 - L1MC5 LINE L1 -87 7874 7797 308 197 13 53 chr9 90608666 90608742 -27253885 + Tigger3(Golem) DNA MER2_type 1 73 -2956 13387 114 34 31 chr9 90608742 90611030 -27251597 - Tigger1 DNA MER2_type 0 2418 125 299 172 17 0 chr9 90611026 90611084 -27251543 + Tigger1 DNA MER2_type 70 128 -2290 * 427 195 13 0 chr9 90611084 90611161 -27251466 + Tigger3(Golem) DNA MER2_type 2951 3028 -1 295 231 153 26 chr9 90611189 90611418 -27251209 - L1MC5 LINE L1 -231 7730 7473 235 174 0 0 chr9 90611429 90611475 -27251152 - L1MC5 LINE L1 -554 7407 7362 297 0 0 0 chr9 90611519 90611552 -27251075 + (CA)n Simple_repeat Simple_repeat 2 34 0 2446 81 0 10 chr9 90611771 90612078 -27250549 - AluSp SINE Alu -9 304 1 229 345 106 0 chr9 90612971 90613084 -27249543 + MIR SINE MIR 18 142 -66 1918 157 0 10 chr9 90613149 90613454 -27249173 + AluJb SINE Alu 1 302 -10 252 0 0 0 chr9 90613479 90613507 -27249120 + (CAT)n Simple_repeat Simple_repeat 2 29 0 248 308 110 22 chr9 90613520 90613611 -27249016 + MIR SINE MIR 1 99 -163 258 345 35 9 chr9 90615145 90615258 -27247369 + L2 LINE L2 3179 3294 -19 2007 122 0 29 chr9 90615462 90615774 -27246853 - AluSx SINE Alu -9 303 1 325 298 43 21 chr9 90616262 90616403 -27246224 + L2 LINE L2 2900 3043 -229 204 286 79 0 chr9 90617443 90617506 -27245121 + L2 LINE L2 3187 3254 -18 252 254 109 43 chr9 90617732 90617870 -27244757 + L2 LINE L2 2156 2302 -1012 1041 334 149 24 chr9 90617994 90618667 -27243960 - L2 LINE L2 -481 2833 2077 243 252 54 18 chr9 90618792 90618903 -27243724 - L1ME LINE L1 -358 5804 5690 225 193 123 0 chr9 90619946 90620003 -27242624 - L3 LINE CR1 -320 1257 1194 509 276 58 38 chr9 90620498 90620791 -27241836 + LTR16A LTR ERVL 143 441 -9 2278 97 3 13 chr9 90620807 90621107 -27241520 + AluSq SINE Alu 2 298 -15 2069 98 0 4 chr9 90621469 90621743 -27240884 + AluSg SINE Alu 1 273 -37 206 286 226 8 chr9 90624050 90624183 -27238444 + L2 LINE L2 1606 1767 -1547 759 199 125 0 chr9 90624189 90624365 -27238262 - MER20 DNA MER1_type 0 219 22 723 311 35 4 chr9 90624391 90624619 -27238008 + L2 LINE L2 1764 1998 -1316 2217 100 0 17 chr9 90626067 90626366 -27236261 - AluSx SINE Alu -18 294 1 340 327 75 26 chr9 90626971 90627197 -27235430 + MIR SINE MIR 25 261 -1 621 171 157 0 chr9 90627264 90627404 -27235223 + L1MC4 LINE L1 7875 8036 -6 6877 209 75 61 chr9 90628086 90628110 -27234517 + L1MA4 LINE L1 16 38 -7527 1822 91 7 44 chr9 90628110 90628165 -27234462 + L1MA2 LINE L1 6018 6073 -231 2384 98 0 0 chr9 90628165 90628461 -27234166 + AluSx SINE Alu 1 296 -16 1822 91 7 44 chr9 90628461 90628703 -27233924 + L1MA2 LINE L1 6073 6304 0 6877 209 75 61 chr9 90628703 90630697 -27231930 + L1MA4 LINE L1 38 2002 -5563 4547 162 55 58 chr9 90630697 90631771 -27230856 - MER11C LTR ERVK 0 1071 1 6877 209 75 61 chr9 90631771 90632581 -27230046 + L1MA4 LINE L1 2002 2799 -4766 1932 139 17 23 chr9 90632581 90632882 -27229745 + AluSx SINE Alu 1 299 -13 6877 209 75 61 chr9 90632882 90633860 -27228767 + L1MA4 LINE L1 2799 4645 -2920 310 73 176 0 chr9 90633854 90633922 -27228705 + L1 LINE L1 5671 5750 -1815 * 1073 136 183 38 chr9 90633927 90634263 -27228364 + MSTA LTR MaLR 1 426 -2 4582 177 43 12 chr9 90634265 90636114 -27226513 + L1MA4 LINE L1 5759 7662 -57 1416 199 96 0 chr9 90636132 90636414 -27226213 + AluJb SINE Alu 1 309 -3 2433 106 0 0 chr9 90636630 90636942 -27225685 + AluSx SINE Alu 1 312 0 320 266 298 14 chr9 90637289 90637507 -27225120 - L2 LINE L2 -2 3311 3032 657 290 37 49 chr9 90638445 90638690 -27223937 + MIR SINE MIR 11 252 -10 2308 86 0 17 chr9 90638787 90639088 -27223539 + AluSq SINE Alu 1 296 -17 21 71 0 0 chr9 90639212 90639254 -27223373 + AT_rich Low_complexity Low_complexity 1 42 0 1814 184 0 13 chr9 90640011 90640327 -27222300 - AluJb SINE Alu 0 312 1 479 177 0 0 chr9 90641172 90641251 -27221376 - 5S rRNA rRNA -42 79 1 227 294 20 39 chr9 90641270 90641372 -27221255 + L2 LINE L2 3173 3272 0 1290 191 141 0 chr9 90641893 90642191 -27220436 - MER58B DNA MER1_type 0 341 2 400 98 0 61 chr9 90642443 90642525 -27220102 + MER53 DNA DNA 101 177 -12 * 466 128 0 0 chr9 90642469 90642547 -27220080 - MER53 DNA DNA -111 78 1 798 267 157 13 chr9 90642549 90642938 -27219689 + L1MC4a LINE L1 5496 5940 -1868 2345 78 0 0 chr9 90644400 90644706 -27217921 + L1PA14 LINE L1 5852 6157 -4 21 36 0 0 chr9 90644706 90644734 -27217893 + AT_rich Low_complexity Low_complexity 1 28 0 225 0 0 0 chr9 90644737 90644762 -27217865 + (TG)n Simple_repeat Simple_repeat 1 25 0 180 77 0 0 chr9 90644762 90644788 -27217839 + (GA)n Simple_repeat Simple_repeat 2 27 0 1766 158 9 25 chr9 90644926 90645243 -27217384 + AluJb SINE Alu 1 312 0 1359 150 4 22 chr9 90646549 90646776 -27215851 + AluJb SINE Alu 84 306 -6 2272 116 3 3 chr9 90646972 90647283 -27215344 + AluSq SINE Alu 1 311 -2 207 365 82 0 chr9 90648247 90648332 -27214295 + MIR SINE MIR 3 94 -168 21 0 0 0 chr9 90649117 90649138 -27213489 + AT_rich Low_complexity Low_complexity 1 21 0 254 125 52 21 chr9 90649276 90649372 -27213255 + (TA)n Simple_repeat Simple_repeat 2 100 0 369 0 0 0 chr9 90650918 90650959 -27211668 + (TG)n Simple_repeat Simple_repeat 2 42 0 201 196 0 0 chr9 90652883 90652934 -27209693 + A-rich Low_complexity Low_complexity 1 51 0 400 322 178 15 chr9 90653869 90654071 -27208556 - MIR SINE MIR -21 241 7 1994 96 10 61 chr9 90654513 90654825 -27207802 + AluSq SINE Alu 1 296 -17 23 33 0 0 chr9 90655482 90655512 -27207115 + AT_rich Low_complexity Low_complexity 1 30 0 216 333 0 16 chr9 90656086 90656149 -27206478 - L2 LINE L2 -22 3250 3189 1176 179 15 118 chr9 90656200 90656336 -27206291 + AluJb SINE Alu 2 86 -216 1709 144 0 22 chr9 90656336 90656606 -27206021 + AluJb SINE Alu 27 290 -22 1176 179 15 118 chr9 90656606 90656799 -27205828 + AluJb SINE Alu 86 297 -5 357 336 166 9 chr9 90656810 90657021 -27205606 - L2 LINE L2 -639 2675 2432 2058 151 23 3 chr9 90657128 90657480 -27205147 - MER46B DNA MER2_type -1 235 2 3019 183 60 55 chr9 90657866 90658832 -27203795 - Charlie1a DNA MER1_type 0 1455 485 794 235 130 54 chr9 90658835 90659112 -27203515 - Charlie1a DNA MER1_type -1156 299 2 441 291 0 61 chr9 90659113 90659278 -27203349 - MIR3 SINE MIR -48 160 6 679 203 0 0 chr9 90659350 90659473 -27203154 + FLAM_A SINE Alu 3 125 -8 1215 227 96 10 chr9 90659632 90659945 -27202682 + MER58B DNA MER1_type 1 340 -1 2263 113 0 0 chr9 90660901 90661203 -27201424 + AluSx SINE Alu 1 302 -10 379 294 48 35 chr9 90661667 90661956 -27200671 - L1ME LINE L1 -316 5805 5513 2181 125 0 0 chr9 90661957 90662269 -27200358 + AluSx SINE Alu 1 312 0 450 228 169 33 chr9 90663130 90663314 -27199313 - MIR SINE MIR -24 238 30 242 196 0 0 chr9 90663962 90664008 -27198619 + L1MC/D LINE L1 5724 5769 -2039 2132 119 0 26 chr9 90664211 90664523 -27198104 - AluSx SINE Alu -8 304 1 2036 152 0 0 chr9 90664523 90664824 -27197803 - AluSx SINE Alu -10 302 1 440 277 147 6 chr9 90665110 90665287 -27197340 + MIR SINE MIR 47 248 -14 2343 78 0 29 chr9 90665305 90665613 -27197014 - AluY SINE Alu -12 299 1 38 39 0 0 chr9 90666234 90666286 -27196341 + AT_rich Low_complexity Low_complexity 1 52 0 1570 141 110 11 chr9 90667969 90668232 -27194395 + AluJo SINE Alu 1 289 -23 1902 169 3 6 chr9 90668882 90669195 -27193432 - AluJb SINE Alu 0 312 1 484 176 24 0 chr9 90669660 90669745 -27192882 - FLAM SINE Alu -13 130 44 2296 77 40 0 chr9 90670508 90670807 -27191820 + AluY SINE Alu 1 311 0 32 26 0 0 chr9 90670807 90670846 -27191781 + AT_rich Low_complexity Low_complexity 1 39 0 2109 129 0 3 chr9 90670847 90671141 -27191486 + AluSx SINE Alu 1 293 -19 1244 147 118 5 chr9 90672570 90672781 -27189846 + MER46A DNA MER2_type 2 236 0 2135 137 0 0 chr9 90672875 90673174 -27189453 - AluSg SINE Alu -11 299 1 2011 118 52 0 chr9 90674330 90674619 -27188008 - AluSg SINE Alu -6 304 1 * 2269 116 3 0 chr9 90674619 90674920 -27187707 - AluSx SINE Alu -10 302 1 181 292 0 0 chr9 90675090 90675138 -27187489 - L2 LINE L2 -219 3053 3006 3692 60 2 2 chr9 90675303 90675749 -27186878 - L1PA6 LINE L1 0 6154 5709 461 274 115 35 chr9 90676243 90676443 -27186184 - MIR SINE MIR -3 259 39 1417 214 48 10 chr9 90676744 90677039 -27185588 - AluJo SINE Alu -6 306 1 200 316 40 13 chr9 90677192 90677268 -27185359 + MIR SINE MIR 161 238 -24 32 26 0 0 chr9 90677348 90677387 -27185240 + AT_rich Low_complexity Low_complexity 1 39 0 817 133 94 22 chr9 90677619 90677800 -27184827 + L1MA4 LINE L1 6100 6293 -7 24 53 0 0 chr9 90678044 90678082 -27184545 + AT_rich Low_complexity Low_complexity 1 38 0 250 201 216 37 chr9 90678336 90678470 -27184157 + L1M4 LINE L1 2752 2909 -3237 462 248 141 0 chr9 90678630 90678751 -27183876 + MIR SINE MIR 47 184 -78 297 196 84 28 chr9 90679023 90679130 -27183497 + L1MA9 LINE L1 6170 6282 -30 313 237 11 32 chr9 90679291 90679384 -27183243 + L2 LINE L2 2605 2695 -619 317 176 176 14 chr9 90679746 90679820 -27182807 + L2 LINE L2 3181 3266 -6 283 259 179 27 chr9 90679827 90679939 -27182688 - L2 LINE L2 -471 2843 2715 308 235 61 20 chr9 90680054 90680152 -27182475 - MER117 DNA MER1_type -81 116 15 2097 140 10 0 chr9 90680271 90680579 -27182048 + AluJo SINE Alu 1 311 -1 21 57 0 0 chr9 90680640 90680675 -27181952 + AT_rich Low_complexity Low_complexity 1 35 0 438 156 78 0 chr9 90681675 90681765 -27180862 + L1MC5 LINE L1 7370 7466 -495 259 111 56 122 chr9 90681817 90681907 -27180720 + L1MC5 LINE L1 7625 7708 -253 480 255 71 0 chr9 90681920 90682061 -27180566 + L1ME3 LINE L1 6011 6161 -1 275 245 82 27 chr9 90682069 90682216 -27180411 + L1MC5 LINE L1 7695 7849 -112 1906 189 157 126 chr9 90682326 90682587 -27180040 + L1MC3 LINE L1 6619 6870 -915 1764 174 0 10 chr9 90682587 90682885 -27179742 + AluJb SINE Alu 1 295 -17 1906 189 157 126 chr9 90682885 90683111 -27179516 + L1MC3 LINE L1 6870 7087 -698 366 211 10 77 chr9 90683111 90683215 -27179412 + MLT1F1 LTR MaLR 37 133 -434 1906 189 157 126 chr9 90683215 90683623 -27179004 + L1MC3 LINE L1 7087 7631 -154 1611 122 24 104 chr9 90684323 90684660 -27177967 - AluJo SINE Alu -2 310 1 2731 185 59 33 chr9 90684771 90684829 -27177798 + MER68 LTR ERV1 1 56 -506 2111 109 3 0 chr9 90684829 90685134 -27177493 + AluY SINE Alu 1 306 0 2731 185 59 33 chr9 90685134 90685620 -27177007 + MER68 LTR ERV1 56 560 -2 296 274 0 20 chr9 90685626 90685728 -27176899 - L1 LINE L1 -1088 5058 4959 310 295 82 16 chr9 90685744 90685866 -27176761 - L1ME3A LINE L1 0 6170 6041 294 315 22 0 chr9 90685947 90686036 -27176591 - MIR SINE MIR -87 121 31 992 330 114 30 chr9 90686519 90687422 -27175205 - L2 LINE L2 -1141 2173 1195 819 259 102 62 chr9 90688270 90688736 -27173891 + MER77 LTR ERV1 219 601 -4 23 86 0 0 chr9 90688740 90688798 -27173829 + AT_rich Low_complexity Low_complexity 1 58 0 813 134 34 0 chr9 90688887 90689006 -27173621 - FLAM_C SINE Alu -10 133 11 2513 216 78 74 chr9 90689496 90690515 -27172112 + L1M4 LINE L1 3584 4606 -1540 1152 258 49 32 chr9 90690699 90690803 -27171824 + L1M4 LINE L1 4640 4741 -1405 1913 153 0 16 chr9 90690803 90691116 -27171511 + AluJb SINE Alu 1 308 -4 1152 258 49 32 chr9 90691116 90691335 -27171292 + L1M4 LINE L1 4741 4978 -1168 2212 139 22 35 chr9 90691335 90691702 -27170925 - THE1B LTR MaLR -2 362 1 1152 258 49 32 chr9 90691702 90691875 -27170752 + L1M4 LINE L1 4978 5147 -999 468 297 256 2 chr9 90691922 90692363 -27170264 + L1MB8 LINE L1 3976 4528 -1618 2221 112 3 13 chr9 90692364 90692667 -27169960 - AluSx SINE Alu -8 304 5 346 245 195 31 chr9 90692689 90692848 -27169779 - MLT1I LTR MaLR -7 402 218 349 158 35 0 chr9 90692944 90693001 -27169626 - MLT1I LTR MaLR -341 68 10 240 254 97 74 chr9 90693130 90693347 -27169280 + L1MB8 LINE L1 4652 4873 -1273 * 402 259 115 33 chr9 90693342 90693575 -27169052 + L1MB8 LINE L1 5406 5650 -471 1693 162 46 36 chr9 90693776 90694078 -27168549 + AluJo SINE Alu 1 305 -7 312 340 93 28 chr9 90694098 90694345 -27168282 + L1MB8 LINE L1 5676 5938 -240 243 250 36 0 chr9 90694397 90694453 -27168174 + polypurine Low_complexity Low_complexity 3 60 0 829 100 0 2 chr9 90694527 90694776 -27167851 + AluSp SINE Alu 1 295 -18 21 0 0 0 chr9 90694776 90694797 -27167830 + AT_rich Low_complexity Low_complexity 1 21 0 2197 90 0 14 chr9 90694883 90695172 -27167455 + AluSq SINE Alu 1 285 -28 36 70 0 0 chr9 90695212 90695283 -27167344 + AT_rich Low_complexity Low_complexity 1 71 0 1822 155 3 0 chr9 90695385 90695669 -27166958 + AluJo SINE Alu 9 293 -19 2283 101 7 0 chr9 90695792 90696099 -27166528 + AluSg SINE Alu 1 309 -1 360 0 0 0 chr9 90696242 90696282 -27166345 + (CA)n Simple_repeat Simple_repeat 2 41 0 1262 215 163 0 chr9 90696283 90696534 -27166093 - AluJo SINE Alu -9 293 2 350 50 75 50 chr9 90696820 90696900 -27165727 + GA-rich Low_complexity Low_complexity 4 85 0 1587 144 12 0 chr9 90697558 90697801 -27164826 + AluSx SINE Alu 63 308 -4 380 258 55 25 chr9 90697859 90698002 -27164625 - MIR SINE MIR -27 181 35 261 75 0 0 chr9 90698243 90698283 -27164344 + (GA)n Simple_repeat Simple_repeat 2 41 0 1084 141 6 6 chr9 90698712 90698875 -27163752 + AluSg/x SINE Alu 132 294 -18 1901 105 18 11 chr9 90698877 90699153 -27163474 + AluSg SINE Alu 1 278 -32 2440 65 3 0 chr9 90699155 90699446 -27163181 + AluY SINE Alu 2 293 -18 2046 119 3 3 chr9 90699942 90700235 -27162392 - AluSg SINE Alu -17 293 1 378 0 0 0 chr9 90700372 90700414 -27162213 + (CA)n Simple_repeat Simple_repeat 1 42 0 268 372 0 0 chr9 90700607 90700701 -27161926 - Tigger8 DNA MER2_type -570 96 3 1773 168 10 7 chr9 90701446 90701749 -27160878 + AluJo SINE Alu 1 304 -8 989 115 0 32 chr9 90701749 90701905 -27160722 + AluJo/FRAM SINE Alu 159 309 -3 1653 137 20 8 chr9 90702026 90702281 -27160346 + AluJb SINE Alu 41 298 -14 209 132 0 26 chr9 90702909 90702947 -27159680 + (TA)n Simple_repeat Simple_repeat 2 38 0 487 298 67 0 chr9 90703276 90703310 -27159317 - MIR SINE MIR -61 201 171 1977 155 0 0 chr9 90703310 90703619 -27159008 + AluJo SINE Alu 1 309 -3 487 298 67 0 chr9 90703619 90703762 -27158865 - MIR SINE MIR -91 171 12 437 368 71 15 chr9 90703921 90704331 -27158296 + L2 LINE L2 2420 2852 -462 21 0 0 0 chr9 90704341 90704362 -27158265 + AT_rich Low_complexity Low_complexity 1 21 0 352 274 69 46 chr9 90704367 90704542 -27158085 - MIR SINE MIR -49 213 35 2165 121 0 7 chr9 90705078 90705376 -27157251 + AluSx SINE Alu 1 296 -16 870 90 0 0 chr9 90706200 90706311 -27156316 - AluSp/q SINE Alu -6 307 197 1800 132 4 22 chr9 90706311 90706583 -27156044 - AluSx SINE Alu -35 277 11 1143 78 7 0 chr9 90706585 90706727 -27155900 - AluSp SINE Alu -170 143 1 2051 123 3 10 chr9 90706728 90707036 -27155591 - AluSx SINE Alu -6 306 1 393 216 103 0 chr9 90707310 90707407 -27155220 + MIR SINE MIR 143 249 -13 2124 140 0 0 chr9 90707526 90707826 -27154801 - AluJb SINE Alu -12 300 1 545 107 0 0 chr9 90707873 90707948 -27154679 + Alu SINE Alu 2 76 -233 1984 98 0 0 chr9 90708048 90708331 -27154296 + AluSg SINE Alu 35 317 0 357 257 119 0 chr9 90708869 90708970 -27153657 + MIR SINE MIR 117 229 -33 363 63 53 168 chr9 90709044 90709083 -27153544 + L1MB3 LINE L1 6099 6122 -61 2065 127 10 0 chr9 90709083 90709382 -27153245 + AluSg SINE Alu 1 302 -8 363 63 53 168 chr9 90709382 90709437 -27153190 + L1MB3 LINE L1 6122 6182 -1 2192 113 0 7 chr9 90709466 90709766 -27152861 + AluSg SINE Alu 1 298 -12 2354 113 0 0 chr9 90710055 90710365 -27152262 - AluSx SINE Alu -2 310 1 4173 162 28 24 chr9 90710826 90710982 -27151645 + L1MB3 LINE L1 5421 5575 -608 2452 63 0 32 chr9 90710982 90711298 -27151329 + AluY SINE Alu 1 306 -5 4173 162 28 24 chr9 90711298 90711901 -27150726 + L1MB3 LINE L1 5575 6183 0 311 242 106 56 chr9 90712078 90712239 -27150388 + MIR SINE MIR 61 229 -33 23 0 0 0 chr9 90712584 90712607 -27150020 + GC_rich Low_complexity Low_complexity 1 23 0 334 269 113 111 chr9 90712891 90713377 -27149250 - L1M2 LINE L1 -5920 929 443 21 0 0 0 chr9 90713439 90713460 -27149167 + GC_rich Low_complexity Low_complexity 1 21 0 183 80 0 0 chr9 90713546 90713571 -27149056 + (CCG)n Simple_repeat Simple_repeat 1 25 0 266 223 32 32 chr9 90713674 90713768 -27148859 + (CCCG)n Simple_repeat Simple_repeat 2 95 0 29 60 0 0 chr9 90713827 90713877 -27148750 + GC_rich Low_complexity Low_complexity 1 50 0 26 30 0 0 chr9 90713958 90713991 -27148636 + GC_rich Low_complexity Low_complexity 1 33 0 2507 53 0 7 chr9 90714815 90715119 -27147508 + AluSg SINE Alu 1 302 -8 21 0 0 0 chr9 90715756 90715777 -27146850 + AT_rich Low_complexity Low_complexity 1 21 0 2461 81 3 0 chr9 90715779 90716089 -27146538 - AluSp SINE Alu -2 311 1 631 247 160 31 chr9 90716328 90716522 -27146105 - MIR SINE MIR -32 230 12 442 194 193 32 chr9 90716524 90716547 -27146080 - L1MC4a LINE L1 -302 5819 5801 2510 80 0 0 chr9 90716547 90716849 -27145778 - AluSx SINE Alu -10 302 1 442 194 193 32 chr9 90716849 90717030 -27145597 - L1MC4a LINE L1 -320 5801 5617 1563 198 3 7 chr9 90717552 90717845 -27144782 + AluJb SINE Alu 1 292 -20 273 163 0 0 chr9 90717856 90717905 -27144722 + GA-rich Low_complexity Low_complexity 2 50 0 718 168 0 0 chr9 90717915 90718028 -27144599 + FLAM_A SINE Alu 13 125 -17 2182 106 0 3 chr9 90718071 90718354 -27144273 + AluSp SINE Alu 1 282 -31 31 0 0 0 chr9 90718354 90718385 -27144242 + AT_rich Low_complexity Low_complexity 1 31 0 792 169 31 8 chr9 90718483 90718613 -27144014 + AluJo/FLAM SINE Alu 1 133 -169 435 145 48 12 chr9 90718532 90718615 -27144012 + FLAM_C SINE Alu 50 135 -8 2383 98 0 6 chr9 90719205 90719520 -27143107 - AluSq SINE Alu 0 313 1 2326 73 0 29 chr9 90719741 90720056 -27142571 + AluY SINE Alu 1 306 -5 656 176 59 49 chr9 90720109 90720313 -27142314 - Charlie2 DNA MER1_type -7 2855 2650 182 0 0 97 chr9 90720336 90720367 -27142260 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2718 196 46 90 chr9 90720388 90720436 -27142191 - MER21A LTR ERV1 -19 912 863 1819 145 7 3 chr9 90720436 90720751 -27141876 + AluSx SINE Alu 1 316 0 2718 196 46 90 chr9 90720751 90721435 -27141192 - MER21A LTR ERV1 -68 863 211 989 113 0 0 chr9 90721451 90721584 -27141043 - AluSp SINE Alu -180 133 1 459 202 0 11 chr9 90721584 90721673 -27140954 - MER39 LTR ERV1 -353 354 267 * 639 109 94 179 chr9 90721656 90721750 -27140877 - MER21A LTR ERV1 -733 198 128 2242 104 0 0 chr9 90721750 90722057 -27140570 - AluSx SINE Alu -5 307 1 639 109 94 179 chr9 90722057 90722163 -27140464 - MER21A LTR ERV1 -803 128 15 652 199 148 27 chr9 90722172 90722360 -27140267 - Charlie2 DNA MER1_type -225 2637 2473 2231 86 3 0 chr9 90722360 90722650 -27139977 - AluSc SINE Alu -18 291 1 652 199 148 27 chr9 90722650 90722758 -27139869 - Charlie2 DNA MER1_type -389 2473 2305 919 121 0 0 chr9 90722802 90722926 -27139701 - FLAM_A SINE Alu -6 127 4 298 213 13 0 chr9 90722938 90723013 -27139614 - Charlie2 DNA MER1_type -553 2309 2234 1203 156 0 70 chr9 90723013 90723081 -27139546 + AluJo SINE Alu 82 153 -159 2321 87 0 0 chr9 90723081 90723379 -27139248 + AluSg SINE Alu 1 298 -12 1203 156 0 70 chr9 90723379 90723554 -27139073 + AluJo SINE Alu 153 308 -4 267 103 0 0 chr9 90723572 90723611 -27139016 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 1887 144 0 0 chr9 90723680 90723972 -27138655 + AluSx SINE Alu 1 292 -20 547 259 65 61 chr9 90723973 90724236 -27138391 - Charlie2 DNA MER1_type -2555 307 44 2252 94 0 0 chr9 90724349 90724648 -27137979 - AluSx SINE Alu -13 299 1 304 330 105 11 chr9 90724763 90724954 -27137673 + L2 LINE L2 2277 2485 -829 285 227 84 34 chr9 90724989 90725108 -27137519 - LTR67 LTR ERVL -1 556 432 1786 120 109 37 chr9 90725893 90726243 -27136384 + THE1C LTR MaLR 1 375 0 2122 109 0 0 chr9 90726398 90726737 -27135890 - AluSx SINE Alu 0 339 1 1065 208 94 64 chr9 90726792 90726846 -27135781 + LTR56 LTR ERV1 9 60 -385 1907 138 0 0 chr9 90726846 90727180 -27135447 + AluSx SINE Alu 1 334 0 1065 208 94 64 chr9 90727180 90727548 -27135079 + LTR56 LTR ERV1 60 445 0 1639 119 0 107 chr9 90727719 90728037 -27134590 + AluSx SINE Alu 1 284 -28 547 319 155 37 chr9 90728124 90728338 -27134289 - L2 LINE L2 -576 2738 2551 2423 60 3 0 chr9 90728338 90728639 -27133988 + AluSp SINE Alu 1 302 -11 547 319 155 37 chr9 90728639 90729048 -27133579 - L2 LINE L2 -763 2551 2041 776 152 0 73 chr9 90729083 90729234 -27133393 + FLAM_C SINE Alu 4 143 0 1809 158 3 3 chr9 90729309 90729613 -27133014 + AluJb SINE Alu 3 306 -6 1258 180 19 0 chr9 90729864 90730075 -27132552 - MLT1A1 LTR MaLR -1 364 150 894 151 8 143 chr9 90730076 90730255 -27132372 - AluJb SINE Alu -17 295 156 2003 101 0 42 chr9 90730255 90730562 -27132065 - AluSx SINE Alu -17 295 2 894 151 8 143 chr9 90730562 90730627 -27132000 - AluJb SINE Alu -156 156 84 1463 181 66 0 chr9 90730628 90730916 -27131711 - AluJo SINE Alu -5 307 1 799 159 7 40 chr9 90730923 90730935 -27131692 - MLT1A1 LTR MaLR -215 150 139 6916 175 108 70 chr9 90730935 90732627 -27130000 + MER52A LTR ERV1 1 1755 0 799 159 7 40 chr9 90732627 90732765 -27129862 - MLT1A1 LTR MaLR -226 139 5 2100 118 0 0 chr9 90732813 90733109 -27129518 - AluSx SINE Alu -15 297 2 2995 118 33 0 chr9 90733231 90733714 -27128913 + L1MA4 LINE L1 5327 5825 -475 747 156 0 2 chr9 90733714 90733965 -27128662 + AluJ SINE Alu 1 305 -7 2548 164 12 2 chr9 90733966 90734448 -27128179 + L1MA4 LINE L1 5814 6300 0 2040 96 0 87 chr9 90734468 90734615 -27128012 + AluSc SINE Alu 1 104 -205 243 0 0 0 chr9 90734615 90734642 -27127985 + (TA)n Simple_repeat Simple_repeat 2 28 0 2040 96 0 87 chr9 90734642 90734827 -27127800 + AluSc SINE Alu 104 304 -5 2256 79 3 10 chr9 90735085 90735388 -27127239 + AluSp SINE Alu 7 307 -6 764 329 35 14 chr9 90735424 90735771 -27126856 - HAL1 LINE L1 -1594 913 560 2122 119 0 10 chr9 90735795 90736106 -27126521 - AluSg SINE Alu -2 308 1 1552 251 79 11 chr9 90736231 90736764 -27125863 + L1MC4 LINE L1 7000 7568 -474 2144 116 0 3 chr9 90736768 90737070 -27125557 + AluSq SINE Alu 1 301 -12 1060 145 0 12 chr9 90737070 90737233 -27125394 + AluSg/x SINE Alu 134 296 -16 2312 77 0 7 chr9 90737233 90737543 -27125084 + AluY SINE Alu 1 308 -3 860 126 0 8 chr9 90737593 90737720 -27124907 + AluJo SINE Alu 9 134 -178 493 261 63 46 chr9 90737764 90738048 -27124579 + L1MC4 LINE L1 7637 7925 -117 333 109 0 0 chr9 90738110 90738165 -27124462 + (TG)n Simple_repeat Simple_repeat 1 55 0 430 248 16 8 chr9 90738167 90738288 -27124339 + L1MC4 LINE L1 7918 8039 -3 2066 121 3 0 chr9 90738742 90739047 -27123580 + AluSx SINE Alu 1 306 -6 2404 62 0 10 chr9 90739235 90739542 -27123085 + AluY SINE Alu 1 304 -7 1853 151 7 0 chr9 90739544 90739843 -27122784 + AluJb SINE Alu 1 301 -11 198 103 0 0 chr9 90740129 90740158 -27122469 + (A)n Simple_repeat Simple_repeat 1 29 0 1476 171 76 0 chr9 90740160 90740451 -27122176 + AluJb SINE Alu 1 311 0 291 229 71 14 chr9 90740482 90740552 -27122075 + MIR SINE MIR 11 84 -178 250 88 0 0 chr9 90740821 90740855 -27121772 + AluSx SINE Alu 1 34 -266 4676 160 61 57 chr9 90740857 90741924 -27120703 + MER11C LTR ERVK 1 1071 0 1807 103 0 39 chr9 90741924 90742206 -27120421 + AluSx SINE Alu 31 301 -11 1269 105 5 11 chr9 90742208 90742399 -27120228 + AluSg/x SINE Alu 120 309 -3 1529 168 0 36 chr9 90742825 90743134 -27119493 - AluJo SINE Alu -14 298 1 381 176 15 0 chr9 90743134 90743202 -27119425 - FLAM_A SINE Alu -6 127 59 1963 145 0 0 chr9 90743262 90743566 -27119061 + AluSx SINE Alu 1 304 -8 1752 132 60 4 chr9 90743898 90744179 -27118448 - AluSx SINE Alu -15 297 1 1627 122 133 20 chr9 90744894 90745140 -27117487 + LTR23 LTR ERV1 1 218 -219 1538 166 29 32 chr9 90745140 90745448 -27117179 + AluJo SINE Alu 3 309 -3 1627 122 133 20 chr9 90745448 90745574 -27117053 + LTR23 LTR ERV1 218 437 0 305 271 108 65 chr9 90745713 90745860 -27116767 + L2 LINE L2 178 317 -2997 1251 156 135 107 chr9 90745860 90746252 -27116375 + MER57A LTR ERV1 1 403 0 305 271 108 65 chr9 90746252 90746455 -27116172 + L2 LINE L2 317 543 -2771 249 191 32 0 chr9 90746564 90746627 -27116000 - L1MA10 LINE L1 -1 6333 6269 2180 97 3 0 chr9 90746630 90746918 -27115709 + AluSx SINE Alu 4 292 -20 1526 210 76 38 chr9 90746975 90747423 -27115204 - L1ME1 LINE L1 -60 6106 5642 * 2281 194 56 30 chr9 90747418 90747711 -27114916 - L1ME1 LINE L1 -30 6136 5821 4881 124 30 43 chr9 90747711 90748060 -27114567 - LTR39 LTR ERV1 0 783 431 2191 91 3 3 chr9 90748060 90748356 -27114271 + AluSp SINE Alu 1 296 -17 4881 124 30 43 chr9 90748356 90748799 -27113828 - LTR39 LTR ERV1 -352 431 1 2281 194 56 30 chr9 90748799 90749041 -27113586 - L1ME1 LINE L1 -345 5821 5587 2171 88 0 3 chr9 90749044 90749359 -27113268 - AluSx SINE Alu 0 314 1 1928 141 7 0 chr9 90749442 90749747 -27112880 - AluJo SINE Alu -5 307 1 821 168 0 0 chr9 90749749 90749880 -27112747 - FLAM_A SINE Alu -2 131 1 575 309 133 35 chr9 90749907 90750229 -27112398 + L2 LINE L2 990 1279 -2035 2204 84 0 20 chr9 90750229 90750527 -27112100 - AluSg SINE Alu -18 292 1 575 309 133 35 chr9 90750527 90750812 -27111815 + L2 LINE L2 1279 1657 -1657 189 0 0 0 chr9 90750848 90750869 -27111758 + (TTTC)n Simple_repeat Simple_repeat 4 24 0 181 188 0 0 chr9 90751258 90751290 -27111337 + L2 LINE L2 448 479 -2835 217 299 32 32 chr9 90751290 90751392 -27111235 + MIR SINE MIR 42 148 -81 2355 84 0 0 chr9 90751464 90751773 -27110854 + AluSg SINE Alu 1 309 -1 2020 98 26 33 chr9 90751912 90752219 -27110408 + AluSx SINE Alu 1 305 -7 523 240 0 16 chr9 90752241 90752366 -27110261 + L1ME3A LINE L1 5797 5919 -251 2186 101 3 3 chr9 90752367 90752675 -27109952 - AluSg SINE Alu -2 308 1 187 286 16 16 chr9 90753124 90753187 -27109440 + MER5A DNA MER1_type 119 181 -8 2211 107 7 3 chr9 90753375 90753685 -27108942 - AluSp SINE Alu -2 311 1 1064 272 207 17 chr9 90753949 90754583 -27108044 - L2 LINE L2 0 3313 2555 726 201 14 101 chr9 90755222 90755431 -27107196 - MER20 DNA MER1_type -12 207 17 270 324 72 9 chr9 90755489 90755600 -27107027 + L2 LINE L2 3196 3313 0 224 320 109 43 chr9 90755890 90756260 -27106367 - L2 LINE L2 -212 3060 2661 2241 99 0 7 chr9 90756585 90756889 -27105738 + AluSq SINE Alu 1 302 -11 349 307 72 24 chr9 90757666 90757832 -27104795 + MIR SINE MIR 28 201 -61 358 168 188 20 chr9 90758038 90758139 -27104488 + MER3 DNA MER1_type 92 209 0 1966 95 32 0 chr9 90758631 90758916 -27103711 + AluSp SINE Alu 1 294 -19 299 196 0 0 chr9 90759136 90759187 -27103440 - MER66A LTR ERV1 -140 338 288 248 164 45 134 chr9 90759600 90759667 -27102960 + MER21B LTR ERV1 45 105 -758 3246 183 80 38 chr9 90759774 90760508 -27102119 + MER21B LTR ERV1 98 862 -1 510 17 0 0 chr9 90760524 90760583 -27102044 + (TA)n Simple_repeat Simple_repeat 2 60 0 978 167 0 32 chr9 90760796 90760982 -27101645 + AluJo SINE Alu 121 300 -12 2225 95 7 0 chr9 90761138 90761443 -27101184 - AluSq SINE Alu -6 307 1 1489 186 3 23 chr9 90761447 90761748 -27100879 - AluJo SINE Alu -15 297 3 1501 151 9 78 chr9 90761794 90762113 -27100514 + AluJo SINE Alu 1 297 -15 1122 215 162 26 chr9 90762113 90762452 -27100175 + MLT1D LTR MaLR 121 505 0 1313 110 0 0 chr9 90762521 90762703 -27099924 + AluSg/x SINE Alu 126 307 -3 1473 166 46 11 chr9 90763167 90763450 -27099177 + AluJb SINE Alu 1 293 -19 239 338 68 0 chr9 90764204 90764278 -27098349 - L2 LINE L2 -54 3259 3181 1299 270 53 40 chr9 90764278 90764486 -27098141 - LTR16B LTR ERVL -4 460 256 2301 76 0 3 chr9 90764486 90764790 -27097837 - AluSg SINE Alu -7 303 1 1299 270 53 40 chr9 90764790 90765033 -27097594 - LTR16B LTR ERVL -208 256 3 309 275 52 100 chr9 90765181 90765313 -27097314 + L1ME4a LINE L1 5904 6041 -80 2055 120 0 10 chr9 90765313 90765612 -27097015 - AluSc SINE Alu -13 296 1 309 275 52 100 chr9 90765612 90765665 -27096962 + L1ME4a LINE L1 6041 6079 -42 1714 123 48 27 chr9 90765665 90765958 -27096669 - AluSx SINE Alu -13 299 1 309 275 52 100 chr9 90765958 90766000 -27096627 + L1ME4a LINE L1 6079 6121 0 2168 89 0 20 chr9 90766005 90766309 -27096318 + AluY SINE Alu 1 298 -13 1020 118 147 63 chr9 90766431 90766669 -27095958 - Tigger2 DNA MER2_type 0 2718 2461 4372 127 24 50 chr9 90766700 90766994 -27095633 - Tigger2 DNA MER2_type -1953 765 465 1855 133 31 0 chr9 90766994 90767280 -27095347 - AluSx SINE Alu -17 295 1 4372 127 24 50 chr9 90767280 90767408 -27095219 - Tigger2 DNA MER2_type -2253 465 335 1674 185 0 0 chr9 90767408 90767694 -27094933 - AluJb SINE Alu -26 286 1 4372 127 24 50 chr9 90767694 90768000 -27094627 - Tigger2 DNA MER2_type -2383 335 55 1420 186 91 0 chr9 90768000 90768274 -27094353 + AluJo SINE Alu 1 299 -13 4372 127 24 50 chr9 90768274 90768328 -27094299 - Tigger2 DNA MER2_type -2663 55 1 2294 78 7 3 chr9 90768599 90768906 -27093721 + AluSx SINE Alu 1 308 -4 434 308 50 45 chr9 90768910 90769108 -27093519 + L1ME4a LINE L1 5286 5484 -2324 304 251 123 91 chr9 90769227 90769249 -27093378 + L1ME4a LINE L1 5742 5762 -359 2172 97 10 0 chr9 90769249 90769548 -27093079 + AluSp SINE Alu 1 302 -11 304 251 123 91 chr9 90769548 90769621 -27093006 + L1ME4a LINE L1 5762 5831 -290 1688 173 0 39 chr9 90769621 90769933 -27092694 + AluJb SINE Alu 7 306 -6 304 251 123 91 chr9 90769933 90770055 -27092572 + L1ME4a LINE L1 5831 5967 -154 804 255 19 61 chr9 90770548 90770811 -27091816 + MIR SINE MIR 11 262 0 2241 112 0 0 chr9 90770856 90771152 -27091475 - AluY SINE Alu -11 300 5 529 281 50 12 chr9 90773242 90773402 -27089225 + MIR3 SINE MIR 20 185 -23 752 207 0 22 chr9 90773550 90773685 -27088942 - FLAM_A SINE Alu 0 133 2 282 56 0 0 chr9 90774105 90774141 -27088486 + (TG)n Simple_repeat Simple_repeat 2 37 0 405 247 89 27 chr9 90774148 90774294 -27088333 + Charlie8 DNA MER1_type 93 247 -2170 2894 201 98 37 chr9 90775175 90776083 -27086544 - L1MB7 LINE L1 0 6184 5225 5230 188 69 20 chr9 90776430 90778529 -27084098 - L1MB4 LINE L1 0 6416 4209 1158 179 17 30 chr9 90778542 90778776 -27083851 - L1MB4 LINE L1 -4739 1645 1415 2861 194 133 46 chr9 90779587 90780419 -27082208 - L1MB4 LINE L1 -5427 957 53 967 211 110 51 chr9 90780428 90780783 -27081844 - HAL1 LINE L1 -1337 1170 795 9215 169 87 51 chr9 90780798 90781163 -27081464 - Charlie5 DNA MER1_type 0 2624 2273 2001 147 20 0 chr9 90781163 90781469 -27081158 - AluSx SINE Alu 0 312 1 9215 169 87 51 chr9 90781469 90783528 -27079099 - Charlie5 DNA MER1_type -351 2273 114 232 331 81 0 chr9 90783810 90783934 -27078693 + MER119 DNA MER1_type 1 134 -449 * 364 226 41 89 chr9 90783922 90784068 -27078559 + MER119 DNA MER1_type 445 583 0 283 232 45 14 chr9 90784077 90784156 -27078471 - MLT1J2 LTR MaLR -306 181 73 614 144 21 0 chr9 90784243 90784340 -27078287 - Tigger7 DNA MER2_type 0 2487 2389 * 1325 180 76 4 chr9 90784337 90784587 -27078040 - Tigger7 DNA MER2_type -2219 268 1 447 291 57 96 chr9 90784684 90785162 -27077465 - HAL1 LINE L1 -1777 730 272 2169 118 167 16 chr9 90785248 90785620 -27077007 - MSTA LTR MaLR 0 428 1 4752 130 47 19 chr9 90785620 90786388 -27076239 - MSTA-int LTR MaLR 0 1580 792 1195 133 232 23 chr9 90786389 90786652 -27075975 + MSTA LTR MaLR 45 362 -66 1500 171 24 27 chr9 90786652 90786945 -27075682 - MSTA-int LTR MaLR -813 767 476 1456 135 0 0 chr9 90786949 90787156 -27075471 + AluSg/x SINE Alu 89 295 -15 1938 108 56 0 chr9 90787211 90787497 -27075130 - AluSx SINE Alu -10 302 1 563 199 41 82 chr9 90787498 90787634 -27074993 - L1MC4 LINE L1 -641 7401 7272 2198 124 0 0 chr9 90787634 90787925 -27074702 + AluSg SINE Alu 1 291 -19 563 199 41 82 chr9 90787925 90787959 -27074668 - L1MC4 LINE L1 -770 7272 7238 850 218 35 5 chr9 90787962 90788164 -27074463 - L1MC4 LINE L1 -960 7082 6875 716 214 16 0 chr9 90788164 90788290 -27074337 + FLAM_A SINE Alu 1 128 -14 1570 232 102 10 chr9 90788293 90788686 -27073941 - L1MC4 LINE L1 -1156 6886 6458 384 104 26 13 chr9 90789352 90789429 -27073198 + (CA)n Simple_repeat Simple_repeat 1 78 0 2014 95 16 51 chr9 90789821 90789966 -27072661 + AluSx SINE Alu 1 150 -162 2341 65 21 0 chr9 90789966 90790257 -27072370 + AluY SINE Alu 1 297 -14 2014 95 16 51 chr9 90790257 90790427 -27072200 + AluSx SINE Alu 150 305 -7 2077 98 0 4 chr9 90790435 90790709 -27071918 + AluSg SINE Alu 7 279 -31 279 0 0 0 chr9 90790712 90790743 -27071884 + (TA)n Simple_repeat Simple_repeat 1 31 0 * 396 0 0 0 chr9 90790742 90790786 -27071841 + (GA)n Simple_repeat Simple_repeat 2 45 0 489 121 0 0 chr9 90790786 90790852 -27071775 + AluSg/x SINE Alu 217 282 -28 243 0 0 0 chr9 90790852 90790879 -27071748 + (TA)n Simple_repeat Simple_repeat 1 27 0 * 638 25 12 0 chr9 90790878 90790958 -27071669 + (GA)n Simple_repeat Simple_repeat 2 82 0 338 243 37 127 chr9 90790958 90791029 -27071598 - L1 LINE L1 -1609 4537 4461 1644 177 47 7 chr9 90791029 90791329 -27071298 - AluJo SINE Alu 0 312 1 338 243 37 127 chr9 90791329 90791446 -27071181 - L1 LINE L1 -1685 4461 4366 2077 98 47 0 chr9 90791641 90791940 -27070687 - AluSq SINE Alu 0 312 1 2277 111 0 0 chr9 90792044 90792341 -27070286 - AluSg SINE Alu -13 297 1 1864 102 11 33 chr9 90792346 90792621 -27070006 - L1PA10 LINE L1 0 6168 5900 2496 66 0 3 chr9 90793267 90793571 -27069056 - AluY SINE Alu -6 305 3 2041 131 0 0 chr9 90794045 90794373 -27068254 - AluJo SINE Alu 0 328 1 719 100 3 132 chr9 90794471 90794491 -27068136 + L1MC3 LINE L1 7660 7681 -346 2329 128 28 50 chr9 90794491 90794609 -27068018 + MLT1B LTR MaLR 1 120 -270 2350 85 0 0 chr9 90794609 90794902 -27067725 + AluSq SINE Alu 1 293 -20 2329 128 28 50 chr9 90794902 90795182 -27067445 + MLT1B LTR MaLR 120 390 0 719 100 3 132 chr9 90795182 90795291 -27067336 + L1MC3 LINE L1 7681 7802 -225 1770 156 20 27 chr9 90795291 90795592 -27067035 - AluJo SINE Alu -13 299 1 719 100 3 132 chr9 90795592 90795629 -27066998 + L1MC3 LINE L1 7802 8027 0 1875 134 33 0 chr9 90795697 90795999 -27066628 + AluSx SINE Alu 1 311 0 615 266 5 60 chr9 90796440 90796658 -27065969 - L2 LINE L2 0 3313 3108 1286 142 33 9 chr9 90796658 90796869 -27065758 + AluJb SINE Alu 87 302 -10 2230 105 3 0 chr9 90796961 90797247 -27065380 - AluSc SINE Alu -17 292 6 656 303 75 34 chr9 90797267 90797561 -27065066 - L2 LINE L2 -373 2941 2636 5288 46 6 3 chr9 90797570 90798597 -27064030 + MER11A LTR ERVK 1 1266 0 2937 241 122 18 chr9 90798607 90799263 -27063364 - L2 LINE L2 -702 2612 1820 1838 121 45 4 chr9 90799263 90799528 -27063099 + AluSg SINE Alu 1 276 -34 2937 241 122 18 chr9 90799528 90799843 -27062784 - L2 LINE L2 -1494 1820 1539 1588 192 90 72 chr9 90800158 90800261 -27062366 + MLT1D LTR MaLR 7 107 -398 2194 100 0 32 chr9 90800261 90800570 -27062057 + AluSg SINE Alu 6 304 -6 1588 192 90 72 chr9 90800570 90800898 -27061729 + MLT1D LTR MaLR 107 446 -59 2166 114 16 0 chr9 90800899 90801206 -27061421 + AluSx SINE Alu 1 312 0 1485 171 20 27 chr9 90801253 90801424 -27061203 - AluJo SINE Alu -22 290 120 243 0 0 0 chr9 90801424 90801451 -27061176 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1485 171 20 27 chr9 90801451 90801571 -27061056 - AluJo SINE Alu -192 120 1 482 125 0 0 chr9 90801572 90801644 -27060983 - MER5A DNA MER1_type -114 75 4 2028 132 14 0 chr9 90802084 90802373 -27060254 + AluY SINE Alu 5 297 -14 1357 100 0 11 chr9 90802376 90802556 -27060071 + AluJb SINE Alu 135 312 0 281 152 0 0 chr9 90802569 90802615 -27060012 + Alu SINE Alu 249 294 -8 21 0 0 0 chr9 90804083 90804104 -27058523 + AT_rich Low_complexity Low_complexity 1 21 0 1555 152 4 0 chr9 90804105 90804348 -27058279 - AluJb SINE Alu 0 312 69 2161 130 0 3 chr9 90804786 90805093 -27057534 + AluSx SINE Alu 1 306 -6 2304 210 29 0 chr9 90805236 90805722 -27056905 + L1M4 LINE L1 4700 5199 -947 1282 131 4 78 chr9 90805723 90805968 -27056659 + AluJb SINE Alu 85 311 -1 746 244 86 25 chr9 90806020 90806217 -27056410 - MER82 DNA MER2_type -1 652 444 287 310 118 24 chr9 90806276 90806429 -27056198 + MIR SINE MIR 36 196 -12 410 185 161 0 chr9 90806452 90806533 -27056094 - MER82 DNA MER2_type -559 94 1 2615 159 40 24 chr9 90806547 90806576 -27056051 + L1MB8 LINE L1 5254 5281 -897 2349 102 0 0 chr9 90806576 90806871 -27055756 + AluSx SINE Alu 1 295 -17 2615 159 40 24 chr9 90806871 90807330 -27055297 + L1MB8 LINE L1 5281 5829 -349 2147 138 0 0 chr9 90807330 90807635 -27054992 + AluJb SINE Alu 1 305 -7 2615 159 40 24 chr9 90807635 90807712 -27054915 + L1MB8 LINE L1 5829 5903 -275 837 151 70 38 chr9 90807718 90807904 -27054723 + L1MB8 LINE L1 5987 6178 0 3374 132 20 53 chr9 90807965 90808510 -27054117 - MER1A DNA MER1_type 0 527 1 1598 170 7 21 chr9 90809150 90809432 -27053195 - AluJb SINE Alu -1 311 34 713 120 0 0 chr9 90809432 90809524 -27053103 - AluJ/FLAM SINE Alu -219 93 2 561 327 75 51 chr9 90809824 90810241 -27052386 + L2 LINE L2 2131 2568 -746 2467 70 3 0 chr9 90810241 90810539 -27052088 + AluSp SINE Alu 1 299 -14 561 327 75 51 chr9 90810539 90810708 -27051919 + L2 LINE L2 2568 2731 -583 361 293 58 51 chr9 90810953 90811406 -27051221 + HAL1b LINE L1 181 455 -893 772 191 0 44 chr9 90811406 90811542 -27051085 - FLAM_A SINE Alu -3 130 1 361 293 58 51 chr9 90811542 90811574 -27051053 + HAL1b LINE L1 455 485 -863 340 333 52 0 chr9 90811836 90812046 -27050581 + L1ME LINE L1 2147 2367 -4029 335 295 178 32 chr9 90812154 90812435 -27050192 + L1ME LINE L1 3693 4014 -2201 269 270 32 0 chr9 90813136 90813199 -27049428 + L2 LINE L2 3190 3254 -59 2105 125 29 0 chr9 90815316 90815628 -27046999 - L1MA8 LINE L1 -248 6043 5723 186 278 204 80 chr9 90816226 90816550 -27046077 + L2 LINE L2 1551 1833 -1481 198 0 0 0 chr9 90816550 90816572 -27046055 + (TC)n Simple_repeat Simple_repeat 2 23 0 186 278 204 80 chr9 90816572 90816594 -27046033 + L2 LINE L2 1833 1851 -1463 2089 115 31 10 chr9 90816594 90816882 -27045745 - AluSq SINE Alu -19 294 1 186 278 204 80 chr9 90816882 90817024 -27045603 + L2 LINE L2 1851 2101 -1213 577 258 105 81 chr9 90817060 90817221 -27045406 - L1ME4a LINE L1 -10 6111 5955 2196 105 3 0 chr9 90817221 90817515 -27045112 - AluSc SINE Alu -12 297 3 577 258 105 81 chr9 90817515 90817778 -27044849 - L1ME4a LINE L1 -166 5955 5700 1651 139 31 76 chr9 90817778 90817964 -27044663 - AluJb SINE Alu -9 303 110 1898 78 27 105 chr9 90817964 90818296 -27044331 - AluYb8 SINE Alu -12 306 1 2203 106 3 3 chr9 90818298 90818591 -27044036 - AluSq SINE Alu -18 295 3 1651 139 31 76 chr9 90818591 90818718 -27043909 - AluJb SINE Alu -203 109 1 577 258 105 81 chr9 90818718 90818882 -27043745 - L1ME4a LINE L1 -421 5700 5508 286 288 117 6 chr9 90818951 90819114 -27043513 + L1ME LINE L1 4495 4675 -1540 808 155 0 0 chr9 90819199 90819315 -27043312 - FLAM_C SINE Alu -18 125 10 2100 120 10 3 chr9 90819410 90819701 -27042926 - AluSx SINE Alu -18 294 2 468 276 99 52 chr9 90819827 90820133 -27042494 + L1ME LINE L1 5287 5625 -565 2074 143 0 0 chr9 90820133 90820426 -27042201 - AluSx SINE Alu -19 293 1 468 276 99 52 chr9 90820426 90820653 -27041974 + L1ME LINE L1 5625 5840 -350 2292 99 3 19 chr9 90820777 90821091 -27041536 + AluSp SINE Alu 1 309 -4 2295 89 7 0 chr9 90821127 90821429 -27041198 - AluSx SINE Alu 0 312 9 7268 50 28 1 chr9 90821551 90822425 -27040202 + MER11D LTR ERVK 1 897 0 279 0 0 0 chr9 90822754 90822785 -27039842 + (A)n Simple_repeat Simple_repeat 1 31 0 1064 157 0 83 chr9 90823439 90823669 -27038958 - AluSg/x SINE Alu -15 297 87 209 87 0 87 chr9 90823672 90823718 -27038909 + (T)n Simple_repeat Simple_repeat 1 42 0 1083 173 10 0 chr9 90824083 90824280 -27038347 + L1PA16 LINE L1 5966 6164 -2 2232 76 7 7 chr9 90824314 90824617 -27038010 - AluY SINE Alu -8 303 1 2169 112 0 0 chr9 90824619 90824922 -27037705 - AluSx SINE Alu -9 303 1 183 80 0 0 chr9 90825035 90825060 -27037567 + (TAA)n Simple_repeat Simple_repeat 1 25 0 2244 100 0 0 chr9 90825399 90825700 -27036927 - AluY SINE Alu -10 301 1 1147 232 148 61 chr9 90825920 90826100 -27036527 + MLT1H LTR MaLR 1 164 -385 2064 115 3 16 chr9 90826100 90826236 -27036391 + AluSx SINE Alu 1 137 -175 2127 87 0 36 chr9 90826236 90826545 -27036082 + AluSx SINE Alu 1 298 -14 2064 115 3 16 chr9 90826545 90826722 -27035905 + AluSx SINE Alu 137 310 -2 1147 232 148 61 chr9 90826722 90827046 -27035581 + MLT1H LTR MaLR 164 549 0 656 269 7 0 chr9 90827328 90827477 -27035150 - MIR SINE MIR -6 256 107 21 36 0 0 chr9 90827762 90827790 -27034837 + AT_rich Low_complexity Low_complexity 1 28 0 483 141 263 10 chr9 90827796 90827895 -27034732 - FLAM_C SINE Alu -18 125 2 2234 76 0 29 chr9 90828247 90828562 -27034065 - AluSx SINE Alu -6 306 1 1024 166 81 25 chr9 90828563 90828798 -27033829 - L1MA7 LINE L1 -121 6170 5923 261 133 0 0 chr9 90829592 90829637 -27032990 + MER4-int LTR ERV1 1116 1160 -5438 552 262 27 27 chr9 90830183 90830332 -27032295 + MIR SINE MIR 42 190 -72 31 0 0 0 chr9 90830334 90830365 -27032262 + AT_rich Low_complexity Low_complexity 1 31 0 812 125 37 7 chr9 90830367 90830503 -27032124 - FRAM SINE Alu -37 139 1 470 248 0 0 chr9 90830509 90830614 -27032013 - MLT1B LTR MaLR -219 171 67 * 834 160 7 7 chr9 90830613 90830757 -27031870 - MLT1B LTR MaLR -246 144 1 569 216 0 0 chr9 90831001 90831103 -27031524 + AluJo/FLAM SINE Alu 2 103 -209 562 208 0 0 chr9 90831098 90831204 -27031423 + AluSg/x SINE Alu 195 300 -12 * 1999 120 0 0 chr9 90831972 90832279 -27030348 + AluSx SINE Alu 1 307 0 3339 144 20 51 chr9 90832539 90833120 -27029507 - LTR26 LTR ERV1 -9 594 31 2103 111 0 0 chr9 90833120 90833408 -27029219 - AluSx SINE Alu -24 288 1 3339 144 20 51 chr9 90833408 90833439 -27029188 - LTR26 LTR ERV1 -572 31 1 399 318 29 20 chr9 90833439 90833604 -27029023 - MIR SINE MIR -78 130 1 1330 158 11 62 chr9 90833635 90833908 -27028719 - LTR3 LTR ERVK 0 432 174 722 139 31 16 chr9 90833908 90834037 -27028590 - MER11A LTR ERVK 0 1266 1136 * 1081 123 18 0 chr9 90834009 90834172 -27028455 - LTR3 LTR ERVK -262 170 5 2191 225 68 89 chr9 90834420 90834810 -27027817 + L1MC4 LINE L1 6832 7228 -814 1798 154 0 16 chr9 90834810 90835121 -27027506 + AluSx SINE Alu 1 306 -6 2191 225 68 89 chr9 90835121 90835665 -27026962 + L1MC4 LINE L1 7228 7747 -295 505 155 119 0 chr9 90835665 90835749 -27026878 + MER58 DNA MER1_type 1 94 -247 2036 95 0 54 chr9 90835760 90836077 -27026550 + AluY SINE Alu 1 300 -11 385 229 12 0 chr9 90836083 90836166 -27026461 - MER34 LTR ERV1 -432 110 27 569 159 9 0 chr9 90836178 90836291 -27026336 + L1MA8 LINE L1 6176 6289 -2 1445 207 6 13 chr9 90836459 90836773 -27025854 + AluJo SINE Alu 1 312 0 2027 140 0 0 chr9 90836811 90837118 -27025509 - AluSq SINE Alu -6 307 1 1882 100 8 0 chr9 90837214 90837475 -27025152 - AluSx SINE Alu -2 310 48 2305 88 0 0 chr9 90837713 90838008 -27024619 - AluSg SINE Alu -15 295 1 1637 178 0 16 chr9 90838287 90838590 -27024037 - AluJb SINE Alu -14 298 1 725 166 23 7 chr9 90839338 90839481 -27023146 - MLT1A1 LTR MaLR -216 158 1 1362 189 33 30 chr9 90840332 90840634 -27021993 + AluJb SINE Alu 1 303 -9 775 336 92 14 chr9 90840635 90841061 -27021566 + L2 LINE L2 1024 1482 -1832 987 126 0 0 chr9 90841070 90841326 -27021301 - AluSg/x SINE Alu 0 390 135 422 273 69 56 chr9 90841503 90841600 -27021027 + L2 LINE L2 2208 2302 -1012 1510 111 0 22 chr9 90841600 90841825 -27020802 + AluJb SINE Alu 85 304 -8 422 273 69 56 chr9 90841825 90841958 -27020669 + L2 LINE L2 2302 2441 -873 260 235 86 12 chr9 90842002 90842083 -27020544 + MLT1L LTR MaLR 188 274 -341 2266 91 0 0 chr9 90842277 90842584 -27020043 - AluY SINE Alu -4 307 1 755 244 125 29 chr9 90842658 90842969 -27019658 + L2 LINE L2 2370 2710 -604 1108 187 0 14 chr9 90843707 90843916 -27018711 + AluJo SINE Alu 82 287 -25 240 35 0 0 chr9 90843928 90843957 -27018670 + (TA)n Simple_repeat Simple_repeat 1 29 0 1894 147 0 3 chr9 90843957 90844250 -27018377 - AluSx SINE Alu -20 292 1 2235 96 0 3 chr9 90844267 90844570 -27018057 - AluY SINE Alu -9 302 1 22 0 0 0 chr9 90844570 90844592 -27018035 + AT_rich Low_complexity Low_complexity 1 22 0 1782 217 105 40 chr9 90844919 90845445 -27017182 - MER68 LTR ERV1 -2 560 1 10582 44 4 45 chr9 90846595 90848060 -27014567 - SVA Other Other 0 1386 1 2369 75 0 0 chr9 90848427 90848722 -27013905 + AluSc SINE Alu 1 295 -14 234 0 0 0 chr9 90848899 90848925 -27013702 + (CA)n Simple_repeat Simple_repeat 1 26 0 1378 157 8 8 chr9 90848928 90849163 -27013464 - AluJb SINE Alu -20 292 58 2485 74 0 0 chr9 90849398 90849710 -27012917 - AluSx SINE Alu 0 312 1 258 282 60 113 chr9 90849781 90850161 -27012466 - L1ME LINE L1 -404 5717 5358 189 0 0 0 chr9 90850199 90850220 -27012407 + (TTTTG)n Simple_repeat Simple_repeat 4 24 0 2070 98 0 0 chr9 90850225 90850501 -27012126 - AluSx SINE Alu -36 276 1 31 44 0 0 chr9 90850522 90850567 -27012060 + AT_rich Low_complexity Low_complexity 1 45 0 2103 118 0 3 chr9 90850686 90850990 -27011637 - AluSx SINE Alu -9 303 1 1409 176 0 8 chr9 90851363 90851607 -27011020 + AluJb SINE Alu 56 297 -15 824 122 0 36 chr9 90852309 90852448 -27010179 - AluJo SINE Alu -178 134 1 2799 77 3 36 chr9 90852780 90853168 -27009459 - THE1C LTR MaLR 0 375 1 825 145 0 0 chr9 90853596 90853720 -27008907 + AluJo/FLAM SINE Alu 1 124 -188 1885 140 0 0 chr9 90853723 90854001 -27008626 - AluJb SINE Alu -15 297 20 309 203 152 51 chr9 90854574 90854653 -27007974 - L2 LINE L2 0 3313 3227 579 306 77 18 chr9 90854654 90855302 -27007325 - L1ME LINE L1 -1779 4367 3626 821 172 31 0 chr9 90855819 90855982 -27006645 + L1MB4 LINE L1 6013 6180 0 2159 105 3 3 chr9 90856004 90856310 -27006317 + AluSq SINE Alu 1 306 -7 302 184 0 46 chr9 90856401 90856488 -27006139 - L1MB3 LINE L1 -2 6181 6099 2059 181 46 28 chr9 90856638 90856941 -27005686 - MLT1C LTR MaLR 0 467 152 1969 115 14 0 chr9 90856941 90857236 -27005391 + AluSx SINE Alu 1 299 -13 2059 181 46 28 chr9 90857236 90857391 -27005236 - MLT1C LTR MaLR -315 152 1 493 219 89 77 chr9 90857466 90857635 -27004992 - LTR41 LTR ERVL -602 171 1 343 98 0 0 chr9 90857704 90857755 -27004872 - L1MB1 LINE L1 -1 6167 6117 1790 128 0 0 chr9 90857790 90858056 -27004571 - AluSx SINE Alu -18 294 29 837 228 11 0 chr9 90858057 90858237 -27004390 - AluJo SINE Alu -23 289 108 251 35 0 0 chr9 90858237 90858266 -27004361 + AluY SINE Alu 8 36 -266 503 354 115 37 chr9 90858578 90858850 -27003777 + L2 LINE L2 2326 2575 -739 2130 92 0 3 chr9 90858850 90859134 -27003493 - AluSx SINE Alu -9 303 21 503 354 115 37 chr9 90859134 90859401 -27003226 + L2 LINE L2 2575 2907 -407 353 151 35 81 chr9 90859654 90859740 -27002887 - L1MCa LINE L1 -4362 2064 1983 656 264 7 19 chr9 90860072 90860227 -27002400 + L2 LINE L2 3159 3311 -2 398 87 116 14 chr9 90860271 90860319 -27002308 - MER53 DNA DNA -79 110 56 368 145 70 16 chr9 90860319 90860403 -27002224 + Alu SINE Alu 1 46 -254 901 172 6 6 chr9 90860447 90860604 -27002023 + MER20 DNA MER1_type 58 214 -5 348 331 81 6 chr9 90861985 90862145 -27000482 + MIR SINE MIR 20 191 -71 243 262 274 0 chr9 90864976 90865060 -26997567 + L2 LINE L2 3129 3235 -37 30 18 0 54 chr9 90866231 90866261 -26996366 + AT_rich Low_complexity Low_complexity 1 28 -25 691 190 8 0 chr9 90866261 90866382 -26996245 - FLAM_A SINE Alu -8 125 4 30 18 0 54 chr9 90866382 90866407 -26996220 + AT_rich Low_complexity Low_complexity 28 53 0 396 304 58 47 chr9 90866454 90866645 -26995982 + MER117 DNA MER1_type 5 197 0 323 381 57 5 chr9 90866979 90867189 -26995438 - L2 LINE L2 -441 2873 2653 229 334 138 44 chr9 90867260 90867877 -26994750 + L2 LINE L2 1678 2352 -962 742 210 113 56 chr9 90867890 90868323 -26994304 - LTR37A LTR ERV1 0 426 5 252 59 0 0 chr9 90869453 90869487 -26993140 + (TG)n Simple_repeat Simple_repeat 1 34 0 5489 79 31 46 chr9 90869671 90871344 -26991283 + SVA Other Other 1 856 -604 21 57 0 0 chr9 90871344 90871379 -26991248 + GC_rich Low_complexity Low_complexity 1 35 0 5489 79 31 46 chr9 90871379 90871392 -26991235 + SVA Other Other 856 868 -592 6706 67 2 38 chr9 90871405 90872427 -26990200 + SVA Other Other 433 1370 -16 218 273 0 0 chr9 90873072 90873116 -26989511 - L2 LINE L2 -27 3286 3243 21 0 0 0 chr9 90873498 90873519 -26989108 + AT_rich Low_complexity Low_complexity 1 21 0 2260 114 0 0 chr9 90875023 90875322 -26987305 - AluSx SINE Alu -13 299 1 1270 179 106 40 chr9 90875565 90875839 -26986788 - AluJo SINE Alu -19 293 2 22 80 0 0 chr9 90875889 90875939 -26986688 + AT_rich Low_complexity Low_complexity 1 50 0 291 255 137 10 chr9 90876264 90876366 -26986261 - MIR SINE MIR -71 191 77 295 304 122 20 chr9 90877249 90877397 -26985230 + L2 LINE L2 2639 2801 -513 346 319 25 0 chr9 90877398 90877517 -26985110 - MER20B DNA MER1_type -661 122 1 2338 83 3 3 chr9 90877543 90877844 -26984783 - AluSc SINE Alu -8 301 1 1930 154 0 26 chr9 90878032 90878337 -26984290 - AluJb SINE Alu -15 297 1 23 33 0 0 chr9 90878864 90878894 -26983733 + AT_rich Low_complexity Low_complexity 1 30 0 789 199 0 27 chr9 90880416 90880562 -26982065 - FLAM_C SINE Alu 0 143 2 2209 116 17 7 chr9 90880752 90881053 -26981574 + AluSx SINE Alu 1 304 -8 1679 119 165 11 chr9 90881372 90881632 -26980995 + AluJo SINE Alu 1 300 -2 2101 108 10 26 chr9 90881995 90882301 -26980326 + AluSx SINE Alu 1 301 -11 2247 85 0 26 chr9 90882308 90882614 -26980013 - AluSq SINE Alu -15 298 1 243 0 0 0 chr9 90882683 90882710 -26979917 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 21 36 0 0 chr9 90884159 90884187 -26978440 + AT_rich Low_complexity Low_complexity 1 28 0 295 306 0 48 chr9 90884298 90884422 -26978205 + MIR3 SINE MIR 88 205 -3 2252 104 7 3 chr9 90885562 90885871 -26976756 - AluSx SINE Alu -2 310 1 2311 80 0 3 chr9 90885882 90886170 -26976457 - AluSc SINE Alu -22 287 1 21 0 0 0 chr9 90886425 90886446 -26976181 + AT_rich Low_complexity Low_complexity 1 21 0 1374 160 59 45 chr9 90886610 90886898 -26975729 - AluJo SINE Alu -20 292 1 214 220 326 8 chr9 90887108 90887240 -26975387 + MIR SINE MIR 86 259 -3 1884 106 16 80 chr9 90888296 90888608 -26974019 - AluSx SINE Alu -20 292 1 320 221 118 52 chr9 90888635 90888771 -26973856 + MIR3 SINE MIR 54 198 -10 762 297 56 49 chr9 90889947 90890355 -26972272 + MLT1K LTR MaLR 155 565 -23 2176 101 0 0 chr9 90890466 90890753 -26971874 + AluJb SINE Alu 21 307 -5 384 272 127 101 chr9 90891108 90891775 -26970852 - L1M2 LINE L1 -5508 1341 403 248 269 103 6 chr9 90891837 90891993 -26970634 - L2 LINE L2 -802 2512 2342 203 245 0 0 chr9 90892898 90892951 -26969676 - L2 LINE L2 -1904 1410 1358 2221 95 3 48 chr9 90893586 90893902 -26968725 - AluSq SINE Alu -11 302 1 186 280 0 0 chr9 90893933 90893983 -26968644 - MIR SINE MIR -74 134 85 1405 218 81 79 chr9 90895076 90895488 -26967139 - MLT1H LTR MaLR 0 549 93 2208 92 0 35 chr9 90895488 90895802 -26966825 - AluSg SINE Alu -7 303 1 1405 218 81 79 chr9 90895802 90895896 -26966731 - MLT1H LTR MaLR -456 93 1 923 239 44 4 chr9 90895902 90896128 -26966499 - MIR SINE MIR -26 236 2 2361 104 7 0 chr9 90896989 90897297 -26965330 - AluSx SINE Alu -2 310 1 1852 92 0 59 chr9 90897651 90897922 -26964705 - AluSg SINE Alu -39 271 17 315 122 0 0 chr9 90898193 90898242 -26964385 + (TCCCC)n Simple_repeat Simple_repeat 3 51 0 2012 134 0 0 chr9 90898268 90898552 -26964075 - AluSx SINE Alu -28 284 1 2328 81 3 7 chr9 90898628 90898926 -26963701 - AluSp SINE Alu -16 297 1 1989 156 3 0 chr9 90900478 90900785 -26961842 - AluJb SINE Alu -4 308 1 203 191 21 21 chr9 90900858 90900905 -26961722 + L2 LINE L2 1693 1739 -1575 674 276 144 51 chr9 90900954 90901133 -26961494 + L1MC/D LINE L1 3715 3876 -2270 2192 108 3 7 chr9 90901133 90901429 -26961198 + AluSc SINE Alu 1 295 -14 674 276 144 51 chr9 90901429 90901998 -26960629 + L1MC/D LINE L1 3876 4541 -1605 1896 156 3 13 chr9 90901998 90902300 -26960327 + AluJb SINE Alu 1 299 -13 674 276 144 51 chr9 90902300 90902333 -26960294 + L1MC/D LINE L1 4541 4570 -1576 396 0 0 0 chr9 90902361 90902405 -26960222 + (TG)n Simple_repeat Simple_repeat 2 45 0 252 63 0 206 chr9 90902449 90902512 -26960115 + FLAM SINE Alu 85 118 -15 881 126 0 0 chr9 90902557 90902676 -26959951 + AluSg/x SINE Alu 134 252 -58 334 273 172 30 chr9 90902711 90902909 -26959718 + L1MC/D LINE L1 5254 5479 -2329 277 209 83 0 chr9 90902965 90903031 -26959596 + MIR SINE MIR 66 139 -69 478 319 59 22 chr9 90903051 90903205 -26959422 - MIR SINE MIR -43 165 6 308 321 42 0 chr9 90903208 90903313 -26959314 + L1MC/D LINE L1 5490 5598 -523 579 184 40 32 chr9 90904151 90904276 -26958351 + MLT1J2 LTR MaLR 7 132 -318 622 253 118 18 chr9 90904281 90904502 -26958125 + MLT1J1 LTR MaLR 204 446 0 976 159 7 187 chr9 90904533 90904730 -26957897 + MER8 DNA MER2_type 1 131 -108 2307 96 6 6 chr9 90904730 90905042 -26957585 - AluSq SINE Alu -1 312 1 976 159 7 187 chr9 90905042 90905133 -26957494 + MER8 DNA MER2_type 131 237 -2 2112 140 0 0 chr9 90905613 90905905 -26956722 - AluSx SINE Alu -20 292 1 1599 152 53 0 chr9 90906969 90907232 -26955395 + Tigger3(Golem) DNA MER2_type 2750 3026 -3 265 291 116 23 chr9 90907238 90907410 -26955217 - L2 LINE L2 -1254 2060 1873 898 190 34 117 chr9 90907439 90907822 -26954805 - Charlie2 DNA MER1_type -2 2860 2510 854 185 28 28 chr9 90907822 90908000 -26954627 + LTR41 LTR ERVL 1 178 -595 349 179 43 0 chr9 90908649 90908727 -26953900 + LTR41 LTR ERVL 705 795 0 744 147 151 17 chr9 90908728 90908960 -26953667 - Charlie2 DNA MER1_type -349 2513 2251 5163 147 117 131 chr9 90908969 90909283 -26953344 + L1MC3 LINE L1 6247 6564 -1221 2252 107 0 3 chr9 90909283 90909592 -26953035 - AluSc SINE Alu -1 308 1 5163 147 117 131 chr9 90909592 90909982 -26952645 + L1MC3 LINE L1 6564 6958 -827 2170 139 0 0 chr9 90909982 90910291 -26952336 - AluSx SINE Alu -3 309 1 5163 147 117 131 chr9 90910291 90910328 -26952299 + L1MC3 LINE L1 6958 6994 -791 2118 176 36 25 chr9 90910328 90910720 -26951907 - MSTD LTR MaLR 0 396 1 5163 147 117 131 chr9 90910720 90910759 -26951868 + L1MC3 LINE L1 6994 7032 -753 195 100 0 0 chr9 90910759 90910789 -26951838 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 5163 147 117 131 chr9 90910789 90910842 -26951785 + L1MC3 LINE L1 7032 7084 -701 450 279 18 0 chr9 90910842 90910953 -26951674 + MLT1F1 LTR MaLR 35 147 -420 5163 147 117 131 chr9 90910953 90911559 -26951068 + L1MC3 LINE L1 7084 7778 -7 2414 99 0 3 chr9 90911566 90911878 -26950749 + AluSx SINE Alu 1 311 -1 270 106 43 0 chr9 90911891 90911938 -26950689 - Charlie2 DNA MER1_type -583 2279 2231 1049 286 20 29 chr9 90911951 90912294 -26950333 - Charlie2 DNA MER1_type -2522 340 1 184 284 90 0 chr9 90912304 90912371 -26950256 - L2 LINE L2 -1529 1785 1713 766 227 91 78 chr9 90912578 90912677 -26949950 + L2 LINE L2 1028 1124 -2190 2502 44 0 3 chr9 90912677 90912974 -26949653 - AluY SINE Alu -12 299 4 766 227 91 78 chr9 90912974 90913248 -26949379 + L2 LINE L2 1124 1406 -1908 729 249 50 27 chr9 90913260 90913481 -26949146 + MLT2F LTR ERVL 424 649 -14 3381 255 80 12 chr9 90913504 90914505 -26948122 + L2 LINE L2 1405 2473 -841 326 233 133 0 chr9 90914617 90914707 -26947920 + L1MC/D LINE L1 5720 5821 -1987 734 298 100 16 chr9 90915590 90916115 -26946512 - L1ME LINE L1 -378 5786 5213 2415 89 0 6 chr9 90916701 90917015 -26945612 - AluSq SINE Alu -1 312 1 257 294 22 11 chr9 90917206 90917298 -26945329 + MIR3 SINE MIR 90 182 -26 216 158 0 0 chr9 90917508 90917546 -26945081 + T-rich Low_complexity Low_complexity 1 38 0 697 200 32 0 chr9 90917852 90917977 -26944650 + MER63 DNA MER1_type 1 755 -81 26 64 0 0 chr9 90918451 90918498 -26944129 + AT_rich Low_complexity Low_complexity 1 47 0 1248 172 0 0 chr9 90918875 90919067 -26943560 + AluJo SINE Alu 5 196 -116 189 0 0 0 chr9 90919097 90919118 -26943509 + (TAA)n Simple_repeat Simple_repeat 2 22 0 33 0 0 0 chr9 90919364 90919397 -26943230 + AT_rich Low_complexity Low_complexity 1 33 0 25 51 0 0 chr9 90919527 90919566 -26943061 + AT_rich Low_complexity Low_complexity 1 39 0 270 289 126 0 chr9 90919769 90919904 -26942723 + L1M4 LINE L1 3632 3783 -2363 1845 155 7 7 chr9 90919909 90920205 -26942422 + AluJb SINE Alu 1 296 -16 355 337 36 24 chr9 90920226 90920478 -26942149 + L1M4 LINE L1 3743 3997 -2149 324 265 75 61 chr9 90920506 90920653 -26941974 - MER69A DNA AcHobo -1 176 28 383 233 42 33 chr9 90920859 90920979 -26941648 + MIR SINE MIR 137 257 -5 257 133 44 0 chr9 90922487 90922532 -26940095 - L1MC1 LINE L1 -1 6332 6286 2040 132 0 0 chr9 90922803 90923090 -26939537 + AluSx SINE Alu 13 299 -13 1576 126 0 71 chr9 90923092 90923347 -26939280 + AluSx SINE Alu 23 259 -53 37 23 0 0 chr9 90923347 90923391 -26939236 + AT_rich Low_complexity Low_complexity 1 44 0 26 30 0 0 chr9 90924717 90924750 -26937877 + AT_rich Low_complexity Low_complexity 1 33 0 205 250 0 0 chr9 90924864 90924908 -26937719 + CT-rich Low_complexity Low_complexity 3 46 0 3487 100 26 0 chr9 90925262 90925763 -26936864 - MER75 DNA T2_type 0 514 1 402 328 97 80 chr9 90926736 90926959 -26935668 - L2 LINE L2 -5 3302 3084 7244 48 0 1 chr9 90926959 90928398 -26934229 - L1PA5 LINE L1 0 6154 4716 402 328 97 80 chr9 90928398 90929350 -26933277 - L2 LINE L2 -223 3084 2073 585 319 32 23 chr9 90930075 90930291 -26932336 + MLT1K LTR MaLR 125 342 -246 500 272 74 12 chr9 90930327 90930489 -26932138 - MLT1K LTR MaLR -54 534 363 2305 172 39 34 chr9 90930497 90930934 -26931693 + MER68 LTR ERV1 123 561 -1 1830 167 0 0 chr9 90932595 90932877 -26929750 + AluJo SINE Alu 1 282 -30 189 0 0 0 chr9 90932880 90932901 -26929726 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 808 183 49 0 chr9 90934169 90934311 -26928316 - FRAM SINE Alu -24 152 4 338 310 204 51 chr9 90934638 90934854 -26927773 + L1ME LINE L1 5329 5577 -544 243 0 0 0 chr9 90934938 90934965 -26927662 + (CA)n Simple_repeat Simple_repeat 2 28 0 282 294 55 18 chr9 90936140 90936249 -26926378 - MIR SINE MIR -63 145 33 309 277 107 34 chr9 90937166 90937343 -26925284 + L1MEc LINE L1 1615 1804 -4592 32 43 0 0 chr9 90937909 90937955 -26924672 + AT_rich Low_complexity Low_complexity 1 46 0 2142 121 3 0 chr9 90937960 90938265 -26924362 - AluSx SINE Alu -2 310 5 21 89 0 0 chr9 90938507 90938563 -26924064 + AT_rich Low_complexity Low_complexity 1 56 0 2095 111 20 3 chr9 90938826 90939132 -26923495 + AluSq SINE Alu 1 311 -2 1389 89 35 0 chr9 90939480 90939683 -26922944 + L1MA1 LINE L1 6093 6302 0 464 350 53 76 chr9 90940261 90940655 -26921972 - L2 LINE L2 0 3272 2888 226 322 167 19 chr9 90940692 90940962 -26921665 - L2 LINE L2 -1545 1769 1460 2522 146 29 0 chr9 90940977 90941362 -26921265 + MER61B LTR ERV1 1 396 -29 731 334 205 29 chr9 90941480 90942475 -26920152 - L2 LINE L2 -1997 1317 148 405 259 79 22 chr9 90942450 90942589 -26920038 + MIR SINE MIR 29 175 -87 * 304 159 0 58 chr9 90942729 90942798 -26919829 + L1MB7 LINE L1 6108 6172 -12 1251 152 14 23 chr9 90943784 90944001 -26918626 - AluJo SINE Alu -14 298 84 279 322 93 8 chr9 90944884 90945002 -26917625 - MER5A DNA MER1_type -26 163 36 200 341 0 37 chr9 90945005 90945087 -26917540 + L2 LINE L2 3193 3271 -1 22 0 0 0 chr9 90945110 90945132 -26917495 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr9 90945161 90945189 -26917438 + AT_rich Low_complexity Low_complexity 1 28 0 192 368 144 23 chr9 90945319 90945493 -26917134 + L2 LINE L2 2778 2972 -342 2348 97 0 0 chr9 90946149 90946458 -26916169 - AluSq SINE Alu -4 309 1 1951 127 7 7 chr9 90947079 90947379 -26915248 + AluSq SINE Alu 1 300 -13 739 216 100 48 chr9 90948129 90948360 -26914267 - MIR SINE MIR 0 262 20 481 335 33 44 chr9 90949711 90949986 -26912641 + L1MDa LINE L1 27 298 -6242 4391 258 63 28 chr9 90949990 90951097 -26911530 - L1MEc LINE L1 -4779 1617 440 2292 113 0 0 chr9 90951097 90951407 -26911220 - AluSx SINE Alu -2 310 1 4391 258 63 28 chr9 90951407 90951828 -26910799 - L1MEc LINE L1 -5956 440 35 21 0 0 0 chr9 90952563 90952584 -26910043 + AT_rich Low_complexity Low_complexity 1 21 0 1951 81 77 0 chr9 90952586 90952847 -26909780 - AluSc SINE Alu -28 281 1 228 167 62 0 chr9 90953912 90953960 -26908667 + MIR SINE MIR 116 166 -96 1577 147 32 67 chr9 90954103 90954417 -26908210 - AluJo SINE Alu -9 303 1 329 375 111 7 chr9 90954560 90954704 -26907923 + L2 LINE L2 3102 3260 -12 26 0 0 0 chr9 90954980 90955006 -26907621 + AT_rich Low_complexity Low_complexity 1 26 0 330 157 0 0 chr9 90955088 90955139 -26907488 - AluJo SINE Alu -18 284 234 24 53 0 0 chr9 90955528 90955566 -26907061 + AT_rich Low_complexity Low_complexity 1 38 0 26 0 0 0 chr9 90955813 90955839 -26906788 + AT_rich Low_complexity Low_complexity 1 26 0 1230 184 60 0 chr9 90956087 90956305 -26906322 - AluJo SINE Alu -81 231 1 21 0 0 0 chr9 90956991 90957012 -26905615 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 90957946 90957967 -26904660 + AT_rich Low_complexity Low_complexity 1 21 0 631 145 79 13 chr9 90958117 90958269 -26904358 + L1ME1 LINE L1 5204 5365 -781 1711 141 66 3 chr9 90958269 90958588 -26904039 + L1MB8 LINE L1 5835 6173 -5 14834 114 20 16 chr9 90958588 90958851 -26903776 - Tigger1 DNA MER2_type 0 2418 2158 1646 161 50 20 chr9 90958851 90959149 -26903478 - AluJo SINE Alu -5 307 1 14834 114 20 16 chr9 90959149 90959355 -26903272 - Tigger1 DNA MER2_type -260 2158 1954 2168 89 14 3 chr9 90959355 90959646 -26902981 + AluSc SINE Alu 1 294 -15 14834 114 20 16 chr9 90959646 90961466 -26901161 - Tigger1 DNA MER2_type -464 1954 119 635 206 8 8 chr9 90961609 90961735 -26900892 - Tigger1 DNA MER2_type -2292 126 1 1376 192 74 10 chr9 90961739 90962036 -26900591 + L1ME1 LINE L1 5347 5662 -502 496 174 0 0 chr9 90962044 90962130 -26900497 + AluJ/FLAM SINE Alu 1 86 -226 33 0 0 0 chr9 90962137 90962170 -26900457 + AT_rich Low_complexity Low_complexity 1 33 0 1730 187 56 73 chr9 90962171 90962652 -26899975 + L1ME1 LINE L1 5650 6122 -44 346 298 115 26 chr9 90962654 90962845 -26899782 + MER77 LTR ERV1 326 533 -72 815 289 76 8 chr9 90963035 90963328 -26899299 - Charlie8 DNA MER1_type -67 274 77 2095 105 35 0 chr9 90963328 90963614 -26899013 + AluSx SINE Alu 1 296 -16 815 289 76 8 chr9 90963614 90963680 -26898947 - Charlie8 DNA MER1_type -264 77 17 291 139 0 0 chr9 90963888 90963931 -26898696 + Tigger1 DNA MER2_type 55 97 -2321 2466 96 43 5 chr9 90964673 90965048 -26897579 - L1PA16 LINE L1 -9 6157 5769 5681 56 6 3 chr9 90965048 90965756 -26896871 - L1PA7 LINE L1 -2 6152 5435 751 97 10 0 chr9 90965756 90965859 -26896768 - L1PA16 LINE L1 -382 5784 5681 4382 174 19 3 chr9 90965863 90967081 -26895546 + L1PA16 LINE L1 4439 5671 -495 2123 109 23 0 chr9 90967234 90967538 -26895089 + AluSx SINE Alu 1 311 -1 256 307 202 0 chr9 90967899 90968013 -26894614 - MIR3 SINE MIR -13 195 59 267 208 14 69 chr9 90969059 90969131 -26893496 - MIR SINE MIR -39 223 156 664 216 7 0 chr9 90969134 90969282 -26893345 - L1MA10 LINE L1 -3 6331 6183 681 213 58 19 chr9 90969286 90969493 -26893134 - L1ME1 LINE L1 -141 6025 5811 352 161 16 0 chr9 90969501 90969563 -26893064 - L1MD1 LINE L1 -24 6218 6156 469 342 88 59 chr9 90969578 90970239 -26892388 - L1MEd LINE L1 -5296 823 144 2078 113 10 0 chr9 90970429 90970721 -26891906 - AluSx SINE Alu -17 295 1 895 140 0 30 chr9 90970722 90970909 -26891718 - AluSc SINE Alu 0 309 129 27 0 0 0 chr9 90970984 90971011 -26891616 + AT_rich Low_complexity Low_complexity 1 27 0 2082 102 7 0 chr9 90971478 90971781 -26890846 - AluSx SINE Alu 0 305 1 23 33 0 0 chr9 90971782 90971812 -26890815 + AT_rich Low_complexity Low_complexity 1 30 0 2956 167 20 24 chr9 90973127 90973679 -26888948 + MER44D DNA MER2_type 1 605 0 438 216 222 33 chr9 90975102 90975255 -26887372 - MIR SINE MIR -68 194 13 2144 139 65 5 chr9 90975255 90975623 -26887004 + MLT1B LTR MaLR 1 390 0 25 51 0 0 chr9 90975727 90975766 -26886861 + AT_rich Low_complexity Low_complexity 1 39 0 1750 187 20 0 chr9 90976242 90976541 -26886086 + AluJo SINE Alu 1 305 -7 250 286 36 0 chr9 90976727 90976811 -26885816 - MIR SINE MIR -2 260 174 22 0 0 0 chr9 90976861 90976883 -26885744 + AT_rich Low_complexity Low_complexity 1 22 0 343 103 35 0 chr9 90977434 90977492 -26885135 - Alu SINE Alu -4 298 239 249 180 0 0 chr9 90977592 90977642 -26884985 + CT-rich Low_complexity Low_complexity 3 52 0 207 182 0 0 chr9 90977690 90977723 -26884904 + polypyrimidine Low_complexity Low_complexity 2 34 0 321 159 0 0 chr9 90977767 90977830 -26884797 + CT-rich Low_complexity Low_complexity 1 63 0 6623 90 8 17 chr9 90978322 90979124 -26883503 - L1PA11 LINE L1 -21 6153 5367 2165 124 0 13 chr9 90979124 90979430 -26883197 - AluSx SINE Alu -10 302 1 6623 90 8 17 chr9 90979430 90980146 -26882481 - L1PA11 LINE L1 -807 5367 4646 818 81 0 0 chr9 90980144 90980255 -26882372 - L1PA11 LINE L1 -1789 4357 4247 * 2718 219 63 74 chr9 90980739 90981726 -26880901 + L1ME LINE L1 31 1005 -5078 942 128 0 0 chr9 90981726 90981859 -26880768 + FLAM_C SINE Alu 1 133 0 2718 219 63 74 chr9 90981859 90981900 -26880727 + L1ME LINE L1 1005 1045 -5038 962 226 164 15 chr9 90981947 90982349 -26880278 + L1M4 LINE L1 3479 3940 -2206 * 1502 155 0 12 chr9 90982342 90982594 -26880033 + L1MB7 LINE L1 3729 3977 -2169 * 2015 146 35 8 chr9 90982592 90982961 -26879666 + L1MA9 LINE L1 5899 6277 -35 3650 156 35 0 chr9 90983048 90983702 -26878925 + L1MB7 LINE L1 5280 5956 -228 2234 99 3 0 chr9 90984636 90984944 -26877683 + AluSp SINE Alu 1 309 0 2440 58 17 0 chr9 90985902 90986197 -26876430 - AluY SINE Alu -11 300 1 182 358 154 12 chr9 90986406 90986568 -26876059 + L2 LINE L2 2113 2297 -1017 531 254 78 7 chr9 90986582 90986724 -26875903 + MER5B DNA MER1_type 26 177 -1 1518 145 124 0 chr9 90987239 90987488 -26875139 - AluSg SINE Alu -25 285 6 307 125 0 0 chr9 90987492 90987540 -26875087 - L1MB3 LINE L1 -40 6143 6096 9715 184 48 48 chr9 90987553 90988111 -26874516 - L1MA4 LINE L1 -281 6201 5645 2286 121 0 0 chr9 90988111 90988424 -26874203 - AluSq SINE Alu 0 313 1 9715 184 48 48 chr9 90988424 90989741 -26872886 - L1MA4 LINE L1 -837 5645 4330 2186 97 24 0 chr9 90989741 90990031 -26872596 - AluSx SINE Alu -15 297 1 9715 184 48 48 chr9 90990031 90990990 -26871637 - L1MA4 LINE L1 -2152 4330 3373 1822 170 24 0 chr9 90990990 90991278 -26871349 - AluJb SINE Alu -14 298 4 9715 184 48 48 chr9 90991278 90994738 -26867889 - L1MA4 LINE L1 -3109 3373 3 277 277 0 0 chr9 90994743 90994808 -26867819 + HAL1 LINE L1 2430 2494 -13 2175 132 3 0 chr9 90994813 90995124 -26867503 - AluSq SINE Alu -1 312 1 25 0 0 0 chr9 90995128 90995153 -26867474 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr9 90995326 90995355 -26867272 + AT_rich Low_complexity Low_complexity 1 29 0 27 29 0 0 chr9 90995466 90995500 -26867127 + AT_rich Low_complexity Low_complexity 1 34 0 34 79 0 0 chr9 90995725 90995801 -26866826 + AT_rich Low_complexity Low_complexity 1 76 0 1413 165 8 13 chr9 90995821 90996058 -26866569 - AluJo SINE Alu -22 290 55 248 250 18 18 chr9 90996069 90996125 -26866502 - MIR SINE MIR -137 71 16 2122 105 7 10 chr9 90996516 90996810 -26865817 - AluSq SINE Alu -20 293 1 21 0 0 0 chr9 90997199 90997220 -26865407 + AT_rich Low_complexity Low_complexity 1 21 0 393 286 123 23 chr9 90997696 90997997 -26864630 - L1ME4a LINE L1 -220 5901 5571 1241 267 99 22 chr9 90997999 90998342 -26864285 + LTR33 LTR ERVL 1 381 -140 3208 158 29 71 chr9 90998342 90999063 -26863564 - LTR8 LTR ERV1 0 691 1 1241 267 99 22 chr9 90999063 90999124 -26863503 + LTR33 LTR ERVL 381 436 -85 193 361 18 30 chr9 90999642 90999811 -26862816 + L2 LINE L2 2035 2201 -1113 * 618 218 85 66 chr9 90999809 90999998 -26862629 - L2 LINE L2 0 3313 3118 2087 137 0 10 chr9 90999998 91000304 -26862323 + AluSx SINE Alu 1 303 -9 618 218 85 66 chr9 91000304 91000325 -26862302 - L2 LINE L2 -195 3118 3099 2207 126 0 0 chr9 91000333 91000627 -26862000 + AluSx SINE Alu 5 298 -14 189 0 0 0 chr9 91000627 91000648 -26861979 + (GA)n Simple_repeat Simple_repeat 2 22 0 854 136 14 7 chr9 91000648 91000795 -26861832 + L1MB8 LINE L1 5823 5970 -208 412 284 11 0 chr9 91000795 91000890 -26861737 - MER5A DNA MER1_type -85 104 9 240 356 10 20 chr9 91000954 91001055 -26861572 + L2 LINE L2 2878 2977 -336 577 268 153 0 chr9 91001196 91001353 -26861274 + MER5A DNA MER1_type 9 189 0 1783 146 0 29 chr9 91002956 91003237 -26859390 + AluSx SINE Alu 6 278 -34 261 0 0 0 chr9 91003237 91003266 -26859361 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 251 242 0 61 chr9 91003374 91003440 -26859187 + MIR SINE MIR 61 122 -140 1907 115 0 4 chr9 91003475 91003744 -26858883 + AluY SINE Alu 34 301 -10 740 262 45 20 chr9 91003747 91003949 -26858678 + MIR SINE MIR 12 218 -44 * 2729 293 101 83 chr9 91003947 91005210 -26857417 + L2 LINE L2 1016 2256 -1057 2548 167 51 15 chr9 91005210 91005664 -26856963 - MER70A LTR ERVL 0 472 3 2729 293 101 83 chr9 91005664 91006150 -26856477 + L2 LINE L2 2256 2732 -581 1845 142 105 6 chr9 91006150 91006482 -26856145 - MLT1A1 LTR MaLR 0 365 1 2729 293 101 83 chr9 91006482 91006990 -26855637 + L2 LINE L2 2732 3303 -10 2143 75 4 4 chr9 91007691 91007969 -26854658 + AluY SINE Alu 26 303 -8 1699 146 24 49 chr9 91007969 91008298 -26854329 + Tigger1 DNA MER2_type 1 321 -2097 * 8204 114 45 10 chr9 91008295 91009577 -26853050 + Tigger1 DNA MER2_type 983 2309 -109 840 47 0 9 chr9 91009577 91009684 -26852943 - AluSg/x SINE Alu -9 300 195 337 121 0 0 chr9 91009684 91009742 -26852885 + Alu SINE Alu 245 302 0 1299 92 0 0 chr9 91009761 91009924 -26852703 - AluSq SINE Alu -112 201 39 487 145 24 0 chr9 91009927 91010010 -26852617 + Tigger1 DNA MER2_type 2300 2384 -34 254 354 117 31 chr9 91010363 91010586 -26852041 + L2 LINE L2 2809 3050 -222 23 105 0 0 chr9 91010816 91010902 -26851725 + AT_rich Low_complexity Low_complexity 1 86 0 358 282 112 58 chr9 91011599 91011740 -26850887 + MIR SINE MIR 45 202 -60 497 56 0 112 chr9 91011740 91011829 -26850798 + MADE1 DNA Mariner 2 80 0 358 282 112 58 chr9 91011829 91011893 -26850734 + MIR SINE MIR 202 261 -1 21 0 0 0 chr9 91012035 91012056 -26850571 + AT_rich Low_complexity Low_complexity 1 21 0 2337 72 0 10 chr9 91012071 91012363 -26850264 - AluSg SINE Alu -21 289 1 1809 136 54 31 chr9 91012468 91012820 -26849807 + MER46B DNA MER2_type 1 235 -1 1800 145 3 63 chr9 91013789 91014106 -26848521 + AluSx SINE Alu 1 298 -14 216 0 0 0 chr9 91015109 91015133 -26847494 + (ATG)n Simple_repeat Simple_repeat 2 25 0 2183 87 3 7 chr9 91015153 91015442 -26847185 - AluSx SINE Alu -24 288 1 21 0 0 0 chr9 91015565 91015586 -26847041 + AT_rich Low_complexity Low_complexity 1 21 0 2185 92 27 0 chr9 91015591 91015883 -26846744 + AluSx SINE Alu 2 301 -11 28 48 0 0 chr9 91017876 91017918 -26844709 + AT_rich Low_complexity Low_complexity 1 42 0 353 317 122 41 chr9 91018202 91018473 -26844154 + L1ME LINE L1 4693 4985 -1161 2132 109 0 0 chr9 91018496 91018806 -26843821 + AluSx SINE Alu 1 310 0 242 262 0 0 chr9 91019271 91019332 -26843295 + L1ME LINE L1 5631 5691 -430 1764 158 40 13 chr9 91019430 91019728 -26842899 + AluJo SINE Alu 7 312 0 489 285 101 25 chr9 91019903 91020219 -26842408 + L1M4 LINE L1 3897 4236 -1910 33 66 0 0 chr9 91020399 91020460 -26842167 + AT_rich Low_complexity Low_complexity 1 61 0 2314 248 147 36 chr9 91020485 91021189 -26841438 + HAL1 LINE L1 1219 1843 -664 189 94 0 0 chr9 91021189 91021221 -26841406 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 2314 248 147 36 chr9 91021221 91021237 -26841390 + HAL1 LINE L1 1843 1856 -651 2291 165 134 30 chr9 91021237 91021735 -26840892 + MER44D DNA MER2_type 1 605 0 2314 248 147 36 chr9 91021735 91022092 -26840535 + HAL1 LINE L1 1856 2417 -90 2290 105 0 0 chr9 91022135 91022431 -26840196 + AluSx SINE Alu 1 296 -16 23 33 0 0 chr9 91022846 91022876 -26839751 + AT_rich Low_complexity Low_complexity 1 30 0 2210 102 0 13 chr9 91022894 91023207 -26839420 - AluSc SINE Alu 0 309 1 1904 122 48 10 chr9 91023970 91024265 -26838362 + AluSx SINE Alu 1 306 -6 552 181 99 53 chr9 91024407 91024465 -26838162 - MER96B DNA MER1_type? -237 180 126 943 104 7 0 chr9 91024465 91024609 -26838018 - L1MB7 LINE L1 -2 6182 6038 552 181 99 53 chr9 91024609 91024721 -26837906 - MER96B DNA MER1_type? -291 126 2 23 33 0 0 chr9 91024882 91024912 -26837715 + AT_rich Low_complexity Low_complexity 1 30 0 2603 55 0 10 chr9 91024931 91025243 -26837384 - AluSc SINE Alu 0 309 1 358 264 46 0 chr9 91025248 91025335 -26837292 - MIR SINE MIR -119 143 53 2753 75 22 34 chr9 91025369 91025783 -26836844 + L1MA1 LINE L1 5894 6302 0 2260 114 7 7 chr9 91026010 91026318 -26836309 - AluSq SINE Alu -4 309 2 210 229 0 0 chr9 91026675 91026723 -26835904 + L3b LINE CR1 1534 1581 -2 228 184 0 0 chr9 91027409 91027458 -26835169 + CT-rich Low_complexity Low_complexity 1 49 0 2464 96 0 0 chr9 91028146 91028458 -26834169 + AluSx SINE Alu 1 312 0 249 352 61 24 chr9 91028980 91029193 -26833434 - L3 LINE CR1 -63 1514 1294 188 372 13 0 chr9 91029251 91029329 -26833298 - L2 LINE L2 0 3272 3194 2187 113 0 3 chr9 91029723 91030015 -26832612 - AluSq SINE Alu -18 295 5 656 184 46 0 chr9 91030026 91030178 -26832449 - MER53 DNA DNA -27 162 4 460 183 0 0 chr9 91030732 91030803 -26831824 - MER45 DNA AcHobo -1 1580 1510 778 167 0 16 chr9 91030805 91030931 -26831696 + FLAM_A SINE Alu 1 124 -9 1432 126 0 8 chr9 91030953 91031191 -26831436 + L1MA8 LINE L1 6050 6285 -6 28 0 0 0 chr9 91031202 91031230 -26831397 + AT_rich Low_complexity Low_complexity 1 28 0 770 122 0 0 chr9 91031230 91031337 -26831290 - U6 snRNA snRNA 0 107 1 415 293 81 0 chr9 91031351 91031450 -26831177 - MER45 DNA AcHobo -933 107 1 548 264 110 13 chr9 91031615 91031632 -26830995 - L3 LINE CR1 -732 845 831 2095 133 0 0 chr9 91031632 91031925 -26830702 - AluSx SINE Alu -17 295 3 548 264 110 13 chr9 91031925 91032134 -26830493 - L3 LINE CR1 -746 831 597 223 307 0 30 chr9 91032352 91032453 -26830174 + GA-rich Low_complexity Low_complexity 3 100 0 183 313 30 30 chr9 91033093 91033192 -26829435 + L2 LINE L2 2936 3034 -238 2138 87 0 93 chr9 91033308 91033652 -26828975 + AluSx SINE Alu 1 312 0 249 365 47 0 chr9 91033658 91033743 -26828884 + L2 LINE L2 3169 3257 -15 244 286 0 0 chr9 91033749 91033805 -26828822 + GA-rich Low_complexity Low_complexity 4 59 0 1681 165 70 0 chr9 91034937 91035052 -26827575 + AluJb SINE Alu 1 107 -205 315 0 0 0 chr9 91035052 91035087 -26827540 + (CA)n Simple_repeat Simple_repeat 2 36 0 1681 165 70 0 chr9 91035087 91035243 -26827384 + AluJb SINE Alu 107 291 -21 245 329 162 16 chr9 91035799 91036176 -26826451 - L2 LINE L2 -2201 1113 682 2157 115 7 7 chr9 91036502 91036806 -26825821 + AluSx SINE Alu 1 304 -8 219 36 0 0 chr9 91037165 91037193 -26825434 + (T)n Simple_repeat Simple_repeat 1 28 0 802 161 0 0 chr9 91037617 91037735 -26824892 + FLAM_C SINE Alu 1 118 -15 2008 144 0 25 chr9 91037773 91038093 -26824534 + AluSx SINE Alu 1 312 0 2180 132 0 3 chr9 91038097 91038407 -26824220 + AluSx SINE Alu 1 309 -3 486 236 200 0 chr9 91038686 91038851 -26823776 - MIR SINE MIR -2 260 63 287 271 222 7 chr9 91039416 91039560 -26823067 - MIR SINE MIR -35 227 53 239 348 42 17 chr9 91039917 91040035 -26822592 - MIR SINE MIR -55 153 33 2361 90 3 3 chr9 91040236 91040536 -26822091 + AluSq SINE Alu 1 300 -13 408 315 99 0 chr9 91040815 91040977 -26821650 - MER91A DNA MER1_type -11 185 8 2271 116 0 3 chr9 91041139 91041440 -26821187 - AluSx SINE Alu -12 300 1 249 139 0 0 chr9 91041642 91041685 -26820942 + (GGGA)n Simple_repeat Simple_repeat 3 45 0 1793 167 3 25 chr9 91043025 91043342 -26819285 - AluJb SINE Alu 0 312 3 355 250 0 0 chr9 91043587 91043663 -26818964 - HAL1 LINE L1 -354 2153 2078 410 311 68 44 chr9 91043794 91043890 -26818737 - L1MEc LINE L1 -3935 2461 2369 2342 104 0 0 chr9 91043890 91044189 -26818438 - AluSx SINE Alu -13 299 1 410 311 68 44 chr9 91044189 91044388 -26818239 - L1MEc LINE L1 -4027 2369 2159 2178 113 0 7 chr9 91044441 91044742 -26817885 - AluSc SINE Alu -10 299 1 361 344 60 48 chr9 91045041 91045125 -26817502 - HAL1 LINE L1 -742 1765 1683 1867 174 23 0 chr9 91045125 91045430 -26817197 - AluJb SINE Alu 0 312 1 361 344 60 48 chr9 91045430 91045679 -26816948 - HAL1 LINE L1 -824 1683 1428 203 267 133 0 chr9 91045795 91045870 -26816757 + L2 LINE L2 3225 3309 -4 326 276 78 46 chr9 91045875 91046158 -26816469 - L1MEc LINE L1 -4906 1299 1008 2466 66 3 10 chr9 91046184 91046488 -26816139 - AluSp SINE Alu -11 302 1 601 217 0 0 chr9 91046489 91046618 -26816009 - L1MB7 LINE L1 -23 6161 6033 2182 114 0 0 chr9 91046624 91046913 -26815714 - AluSx SINE Alu -23 289 1 479 131 36 0 chr9 91046914 91046998 -26815629 - L1ME1 LINE L1 -269 5897 5811 565 171 19 25 chr9 91047286 91047444 -26815183 + CT-rich Low_complexity Low_complexity 4 160 0 976 101 0 43 chr9 91047451 91047639 -26814988 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1820 173 17 0 chr9 91048174 91048475 -26814152 - AluJo SINE Alu -2 310 5 195 42 0 0 chr9 91048485 91048509 -26814118 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1874 155 0 33 chr9 91048516 91048820 -26813807 - AluSq SINE Alu -19 294 1 2348 107 3 0 chr9 91048932 91049242 -26813385 - AluSp SINE Alu -2 311 1 2152 85 29 4 chr9 91050015 91050334 -26812293 - AluSc SINE Alu 0 326 1 756 275 39 9 chr9 91050831 91051064 -26811563 + MIR SINE MIR 23 262 0 2311 83 7 0 chr9 91051162 91051462 -26811165 + AluY SINE Alu 1 302 -9 3250 152 21 31 chr9 91052271 91052586 -26810041 - L1MB3 LINE L1 -1 6182 5874 2349 98 0 0 chr9 91052586 91052891 -26809736 - AluY SINE Alu -6 305 1 3250 152 21 31 chr9 91052891 91053188 -26809439 - L1MB3 LINE L1 -309 5874 5576 3727 146 16 71 chr9 91053208 91053913 -26808714 + LTR8 LTR ERV1 1 666 -25 339 164 0 0 chr9 91053926 91053981 -26808646 + LTR8 LTR ERV1 635 689 -2 2266 109 3 0 chr9 91054576 91054878 -26807749 + AluSx SINE Alu 1 303 -9 3400 153 45 13 chr9 91055003 91055606 -26807021 + LTR26E LTR ERV1 1 622 0 2073 116 7 20 chr9 91055864 91056158 -26806469 + AluSx SINE Alu 3 292 -20 198 250 28 74 chr9 91056624 91056732 -26805895 + MIR SINE MIR 65 167 -95 1711 166 14 0 chr9 91056897 91057203 -26805424 - AluSx SINE Alu 0 310 1 399 299 117 65 chr9 91057381 91057859 -26804768 + L1ME4a LINE L1 5550 6052 -69 687 88 22 140 chr9 91058409 91058545 -26804082 + MLT1C LTR MaLR 2 121 -346 5672 192 2 3 chr9 91058648 91059621 -26803006 - MST-int LTR MaLR -679 972 1 326 303 59 20 chr9 91060614 91060767 -26801860 + MIR3 SINE MIR 13 170 -62 1268 117 15 39 chr9 91061085 91061291 -26801336 - AluJb SINE Alu -111 201 1 2051 140 0 0 chr9 91061629 91061921 -26800706 + AluSx SINE Alu 1 292 -20 1554 89 14 92 chr9 91061927 91062209 -26800418 - L1MA5A LINE L1 -5 6292 6033 2358 86 3 29 chr9 91062209 91062524 -26800103 - AluSq SINE Alu -6 307 1 254 348 29 0 chr9 91062533 91062671 -26799956 - HAL1 LINE L1 -783 1724 1583 2288 109 3 6 chr9 91064932 91065243 -26797384 + AluSx SINE Alu 1 310 -2 359 265 103 32 chr9 91065714 91065899 -26796728 - L2 LINE L2 -168 3104 2907 187 303 13 40 chr9 91066009 91066085 -26796542 - L2 LINE L2 -521 2793 2720 2261 116 3 0 chr9 91066397 91066698 -26795929 - AluSx SINE Alu -10 302 1 21 0 0 0 chr9 91066817 91066838 -26795789 + AT_rich Low_complexity Low_complexity 1 21 0 1943 107 0 4 chr9 91067226 91067534 -26795093 + AluSx SINE Alu 21 327 0 2314 136 28 58 chr9 91067813 91068057 -26794570 - L1MB7 LINE L1 -128 6056 5829 2327 101 0 13 chr9 91068057 91068373 -26794254 - AluSx SINE Alu 0 312 1 2314 136 28 58 chr9 91068373 91068563 -26794064 - L1MB7 LINE L1 -355 5829 5635 2257 103 3 0 chr9 91068764 91069066 -26793561 + AluSg SINE Alu 1 303 -7 2054 125 27 0 chr9 91069525 91069821 -26792806 + AluSx SINE Alu 1 304 -8 275 265 119 26 chr9 91070924 91071075 -26791552 - MIR SINE MIR -60 202 38 237 238 116 72 chr9 91072115 91072296 -26790331 + MIR3 SINE MIR 9 197 -11 1596 187 70 13 chr9 91072394 91072721 -26789906 - MLT1A1 LTR MaLR -7 498 14 220 205 205 0 chr9 91073034 91073112 -26789515 + MER5B DNA MER1_type 23 116 -62 230 229 0 0 chr9 91073198 91073246 -26789381 - MER5B DNA MER1_type -124 54 7 192 77 0 0 chr9 91074051 91074077 -26788550 + (A)n Simple_repeat Simple_repeat 1 26 0 37 0 0 0 chr9 91075490 91075527 -26787100 + AT_rich Low_complexity Low_complexity 1 37 0 2011 141 30 7 chr9 91076740 91077045 -26785582 - AluJb SINE Alu 0 312 1 2206 101 10 10 chr9 91078021 91078329 -26784298 + AluSg SINE Alu 1 308 -2 2012 149 3 0 chr9 91078672 91078974 -26783653 + AluSx SINE Alu 2 304 -8 25 0 0 0 chr9 91079001 91079026 -26783601 + AT_rich Low_complexity Low_complexity 1 25 0 209 309 21 21 chr9 91079588 91079685 -26782942 + (CATATA)n Simple_repeat Simple_repeat 1 97 0 348 306 71 0 chr9 91080772 91080942 -26781685 + L1ME4a LINE L1 5740 5921 -200 2575 55 0 0 chr9 91081040 91081350 -26781277 + AluY SINE Alu 2 311 0 2367 107 7 0 chr9 91081619 91081929 -26780698 + AluSx SINE Alu 1 312 0 552 155 0 0 chr9 91082596 91082680 -26779947 - AluSg1 SINE Alu -223 86 3 2116 124 0 3 chr9 91082848 91083146 -26779481 + AluSx SINE Alu 1 297 -15 2179 107 3 13 chr9 91083388 91083697 -26778930 + AluSq SINE Alu 1 306 -7 2380 81 0 13 chr9 91084236 91084543 -26778084 - AluY SINE Alu -8 303 1 1786 154 62 0 chr9 91084562 91084835 -26777792 - AluJb SINE Alu -22 290 1 2332 43 40 13 chr9 91085101 91085401 -26777226 - AluY SINE Alu -3 308 1 2007 151 0 0 chr9 91085711 91086009 -26776618 + AluSx SINE Alu 1 298 -14 881 137 0 22 chr9 91087051 91087190 -26775437 - FLAM_C SINE Alu -7 136 1 2112 141 0 0 chr9 91087382 91087681 -26774946 + AluSx SINE Alu 1 299 -13 329 274 125 65 chr9 91088092 91088260 -26774367 - MIR SINE MIR -67 195 18 258 324 0 0 chr9 91088257 91088331 -26774296 + MIR SINE MIR 189 262 0 * 2167 113 36 0 chr9 91089179 91089480 -26773147 - AluSx SINE Alu 0 312 1 335 318 23 8 chr9 91089704 91089836 -26772791 - MER94 DNA DNA 0 134 1 3189 168 19 74 chr9 91090341 91091072 -26771555 - LTR8 LTR ERV1 0 691 1 36 0 0 0 chr9 91091683 91091719 -26770908 + AT_rich Low_complexity Low_complexity 1 36 0 1274 103 0 0 chr9 91091719 91091875 -26770752 - AluJb SINE Alu -140 172 17 1614 134 3 88 chr9 91092428 91092748 -26769879 - MER4A LTR ERV1 0 664 372 590 102 10 10 chr9 91092800 91092898 -26769729 - MER4A LTR ERV1 -566 98 1 234 248 29 95 chr9 91092908 91093013 -26769614 + MIR3 SINE MIR 111 208 0 533 189 75 0 chr9 91093335 91093441 -26769186 - FLAM_C SINE Alu -19 114 1 512 130 11 11 chr9 91093442 91093534 -26769093 - MER58 DNA MER1_type -11 2409 2318 553 226 7 7 chr9 91093579 91093716 -26768911 + L1P3 LINE L1 1279 1415 -5046 463 242 0 10 chr9 91093718 91093817 -26768810 - MER58 DNA MER1_type -243 98 1 966 229 178 6 chr9 91093907 91094222 -26768405 - MLT1G LTR MaLR -199 391 23 2103 145 0 0 chr9 91094228 91094524 -26768103 - AluJb SINE Alu -15 297 2 377 206 113 31 chr9 91095428 91095525 -26767102 + MIR SINE MIR 84 188 -74 2496 132 62 0 chr9 91095853 91096256 -26766371 + MSTC LTR MaLR 1 428 0 418 291 94 8 chr9 91096453 91096580 -26766047 + MIR SINE MIR 24 161 -101 198 295 0 0 chr9 91096704 91096765 -26765862 - L2 LINE L2 -661 2653 2593 329 267 42 33 chr9 91097297 91097417 -26765210 - MER20 DNA MER1_type -20 199 79 2364 86 0 7 chr9 91097417 91097721 -26764906 - AluSg SINE Alu -8 302 1 391 188 12 12 chr9 91098340 91098425 -26764202 - MER20 DNA MER1_type -134 85 1 1949 79 105 0 chr9 91098475 91098741 -26763886 + AluSx SINE Alu 1 294 -18 186 311 16 16 chr9 91098752 91098813 -26763814 + L2 LINE L2 3186 3246 -26 22 0 0 0 chr9 91099222 91099244 -26763383 + AT_rich Low_complexity Low_complexity 1 22 0 2131 119 0 3 chr9 91099333 91099626 -26763001 - AluSg SINE Alu -18 292 1 216 250 62 0 chr9 91100155 91100219 -26762408 + L2 LINE L2 3246 3313 0 228 295 205 0 chr9 91100237 91100315 -26762312 + MIR SINE MIR 27 120 -88 274 292 97 69 chr9 91101176 91101320 -26761307 - L2 LINE L2 -15 3257 3110 248 325 66 60 chr9 91101575 91101726 -26760901 - L2 LINE L2 -521 2793 2642 353 289 41 0 chr9 91101741 91101838 -26760789 + L2 LINE L2 3197 3297 -16 486 311 110 5 chr9 91102295 91102504 -26760123 + MIR SINE MIR 18 248 -14 1272 123 6 6 chr9 91102516 91102695 -26759932 - AluSg/x SINE Alu 0 310 132 2237 116 3 3 chr9 91102695 91102998 -26759629 - AluSx SINE Alu -9 303 1 427 321 15 0 chr9 91103028 91103159 -26759468 + MLT1J LTR MaLR 1 133 -378 734 290 65 3 chr9 91103199 91103492 -26759135 + L1ME3A LINE L1 5494 5804 -366 304 333 119 0 chr9 91103758 91103917 -26758710 + L1ME3A LINE L1 5980 6157 -13 513 235 142 62 chr9 91103985 91104245 -26758382 + MLT1J LTR MaLR 231 511 0 198 208 0 0 chr9 91104301 91104349 -26758278 + (CA)n Simple_repeat Simple_repeat 1 48 0 779 276 84 36 chr9 91104364 91104814 -26757813 + L1MC/D LINE L1 5340 5811 -1997 24 32 0 0 chr9 91104814 91104845 -26757782 + AT_rich Low_complexity Low_complexity 1 31 0 2156 92 6 50 chr9 91105057 91105374 -26757253 - AluSx SINE Alu -9 303 1 23 33 0 0 chr9 91105396 91105426 -26757201 + AT_rich Low_complexity Low_complexity 1 30 0 2108 125 0 0 chr9 91106711 91107008 -26755619 - AluSx SINE Alu -14 298 2 21 0 0 0 chr9 91107013 91107034 -26755593 + AT_rich Low_complexity Low_complexity 1 21 0 2183 87 3 7 chr9 91107157 91107446 -26755181 + AluSx SINE Alu 1 288 -24 216 0 0 0 chr9 91107466 91107490 -26755137 + (CAT)n Simple_repeat Simple_repeat 2 25 0 2369 39 4 0 chr9 91108129 91108431 -26754196 + AluY SINE Alu 1 303 0 1961 147 0 23 chr9 91108489 91108795 -26753832 + AluJb SINE Alu 3 301 -11 1391 246 13 0 chr9 91109260 91109569 -26753058 + LTR16A LTR ERVL 138 450 0 723 336 59 8 chr9 91109610 91109967 -26752660 - L2 LINE L2 -510 2804 2430 766 247 14 104 chr9 91110290 91110493 -26752134 + MIR SINE MIR 2 222 -40 2371 93 0 7 chr9 91110493 91110795 -26751832 - AluSx SINE Alu -12 300 1 766 247 14 104 chr9 91110795 91110807 -26751820 + MIR SINE MIR 222 233 -29 2007 160 3 3 chr9 91110807 91111114 -26751513 - AluJo SINE Alu 0 312 6 766 247 14 104 chr9 91111114 91111184 -26751443 + MIR SINE MIR 233 262 0 378 315 16 24 chr9 91111186 91111313 -26751314 + L2 LINE L2 3187 3312 -1 544 275 76 70 chr9 91111323 91111625 -26751002 + MLT1J LTR MaLR 7 310 -201 2277 123 7 0 chr9 91111944 91112254 -26750373 + AluSx SINE Alu 1 312 0 21 0 0 0 chr9 91113350 91113371 -26749256 + AT_rich Low_complexity Low_complexity 1 21 0 991 161 114 0 chr9 91113500 91113693 -26748934 + MER20 DNA MER1_type 1 215 -4 21 57 0 0 chr9 91114197 91114232 -26748395 + AT_rich Low_complexity Low_complexity 1 35 0 486 130 111 0 chr9 91114622 91114730 -26747897 + L1MA8 LINE L1 6068 6187 -104 895 108 97 43 chr9 91114730 91114913 -26747714 + L1MA8 LINE L1 6094 6288 -3 1190 111 22 17 chr9 91115028 91115208 -26747419 + AluSx SINE Alu 1 181 -131 1833 138 14 11 chr9 91115208 91115491 -26747136 + AluSq SINE Alu 23 306 -7 1954 152 0 7 chr9 91117003 91117313 -26745314 + AluJo SINE Alu 1 308 -4 199 299 45 15 chr9 91117317 91117384 -26745243 + MER5A DNA MER1_type 47 115 -74 311 83 42 0 chr9 91117452 91117500 -26745127 - Alu SINE Alu -5 297 248 1233 204 17 0 chr9 91117600 91117831 -26744796 + AluJb SINE Alu 72 306 -6 23 33 0 0 chr9 91118232 91118262 -26744365 + AT_rich Low_complexity Low_complexity 1 30 0 243 0 0 0 chr9 91119501 91119528 -26743099 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 1123 86 86 0 chr9 91119852 91120026 -26742601 - MER30 DNA MER1_type -41 189 1 2147 99 3 30 chr9 91120556 91120858 -26741769 + AluSx SINE Alu 4 297 -15 353 211 200 0 chr9 91121066 91121156 -26741471 + HsTC2 DNA Tc2 14 121 -1777 240 111 0 0 chr9 91121370 91121406 -26741221 + (CA)n Simple_repeat Simple_repeat 2 37 0 379 204 111 45 chr9 91121513 91121696 -26740931 + MER5C DNA MER1_type 1 272 -52 2238 119 3 3 chr9 91121696 91121999 -26740628 - AluSx SINE Alu -9 303 1 379 204 111 45 chr9 91121999 91122056 -26740571 + MER5C DNA MER1_type 272 324 0 466 125 28 28 chr9 91122243 91122387 -26740240 + (TA)n Simple_repeat Simple_repeat 2 145 0 1548 180 48 7 chr9 91122406 91122678 -26739949 - AluJo SINE Alu -29 283 1 2074 144 0 3 chr9 91123247 91123559 -26739068 + AluSx SINE Alu 1 311 -1 193 364 74 8 chr9 91124630 91124751 -26737876 - L2 LINE L2 -2 3311 3183 1976 126 0 4 chr9 91125079 91125348 -26737279 + AluSx SINE Alu 6 273 -39 1634 232 75 2 chr9 91125711 91126137 -26736490 - L1ME3A LINE L1 -6 6164 5708 536 263 0 25 chr9 91126201 91126361 -26736266 + L1MEc LINE L1 225 380 -6207 2416 87 0 13 chr9 91126365 91126674 -26735953 + AluSx SINE Alu 1 305 -7 569 181 36 3 chr9 91126702 91126847 -26735780 + L1MEc LINE L1 933 1043 -5366 554 219 144 12 chr9 91127152 91127312 -26735315 + MER5A DNA MER1_type 9 189 0 2131 108 7 7 chr9 91127563 91127885 -26734742 + AluSx SINE Alu 1 312 0 193 276 79 13 chr9 91128205 91128281 -26734346 - MER5A DNA MER1_type -107 82 2 2321 95 7 0 chr9 91128540 91128834 -26733793 + AluSq SINE Alu 1 296 -17 481 143 26 0 chr9 91129218 91129295 -26733332 - AluJo SINE Alu -13 299 221 * 538 175 9 44 chr9 91129292 91129406 -26733221 - AluJo SINE Alu -157 155 46 2229 111 0 3 chr9 91129418 91129715 -26732912 - AluSq SINE Alu -17 296 1 508 238 83 36 chr9 91130214 91130382 -26732245 + MER5B DNA MER1_type 1 176 -2 1986 139 0 0 chr9 91130418 91130698 -26731929 + AluJb SINE Alu 21 300 -12 2284 105 0 0 chr9 91130713 91131007 -26731620 - AluSx SINE Alu -14 298 5 1981 166 0 0 chr9 91131384 91131686 -26730941 + AluSx SINE Alu 1 302 -10 207 47 23 47 chr9 91132338 91132381 -26730246 + (GAAA)n Simple_repeat Simple_repeat 1 42 0 1271 79 28 17 chr9 91132756 91132933 -26729694 - L1PA11 LINE L1 0 6174 5996 1257 151 166 11 chr9 91133346 91133611 -26729016 + AluSg SINE Alu 1 306 -4 1652 158 38 38 chr9 91133670 91133962 -26728665 + AluJb SINE Alu 1 292 -20 240 111 0 0 chr9 91133963 91133999 -26728628 + (CA)n Simple_repeat Simple_repeat 2 37 0 24 0 0 0 chr9 91134322 91134346 -26728281 + AT_rich Low_complexity Low_complexity 1 24 0 442 252 126 24 chr9 91135211 91135417 -26727210 + L1ME3 LINE L1 5599 5825 -296 381 287 37 0 chr9 91135470 91135578 -26727049 + L2 LINE L2 3201 3312 -1 231 200 0 22 chr9 91135615 91135660 -26726967 + CT-rich Low_complexity Low_complexity 3 46 0 449 257 102 5 chr9 91136308 91136495 -26726132 + L2 LINE L2 3104 3308 -5 26 50 0 0 chr9 91137247 91137287 -26725340 + GC_rich Low_complexity Low_complexity 1 40 0 268 285 0 12 chr9 91137308 91137411 -26725216 + G-rich Low_complexity Low_complexity 1 101 0 21 36 0 0 chr9 91137759 91137787 -26724840 + GC_rich Low_complexity Low_complexity 1 28 0 599 224 228 4 chr9 91138318 91138555 -26724072 + MER33 DNA MER1_type 5 294 -30 2443 71 0 7 chr9 91138798 91139107 -26723520 + AluSg1 SINE Alu 1 307 -2 2321 61 20 3 chr9 91139430 91139725 -26722902 + AluSp SINE Alu 1 300 -13 426 317 106 0 chr9 91140004 91140165 -26722462 - MER91A DNA MER1_type -11 185 8 2236 116 0 7 chr9 91140327 91140629 -26721998 - AluSx SINE Alu -12 300 1 1904 148 3 3 chr9 91140704 91140987 -26721640 - AluJb SINE Alu -29 283 1 866 248 89 15 chr9 91140988 91141258 -26721369 + L1ME3 LINE L1 5866 6155 -7 205 302 36 57 chr9 91141377 91141569 -26721058 - L2 LINE L2 -755 2559 2372 325 315 44 17 chr9 91141980 91142161 -26720466 + MIR SINE MIR 12 197 -65 521 79 13 0 chr9 91142475 91142551 -26720076 + L1PA16 LINE L1 6089 6165 -1 2299 92 7 0 chr9 91142556 91142851 -26719776 + AluSc SINE Alu 1 297 -12 1036 258 70 82 chr9 91142966 91143477 -26719150 - MLT1J LTR MaLR 0 511 7 327 315 16 24 chr9 91143487 91143614 -26719013 - L2 LINE L2 -1 3312 3187 798 247 14 104 chr9 91143616 91143686 -26718941 - MIR SINE MIR 0 262 187 1983 160 3 3 chr9 91143686 91143993 -26718634 + AluJo SINE Alu 6 312 0 798 247 14 104 chr9 91143993 91144005 -26718622 - MIR SINE MIR -75 187 176 2392 93 0 7 chr9 91144005 91144307 -26718320 + AluSx SINE Alu 1 300 -12 798 247 14 104 chr9 91144307 91144510 -26718117 - MIR SINE MIR -86 176 2 602 339 59 8 chr9 91144833 91145190 -26717437 + L2 LINE L2 2430 2804 -510 1503 226 26 13 chr9 91145231 91145540 -26717087 - LTR16A LTR ERVL 0 450 138 1963 147 0 23 chr9 91146005 91146311 -26716316 - AluJb SINE Alu -11 301 3 2424 47 4 0 chr9 91146369 91146671 -26715956 - AluY SINE Alu 0 303 1 1027 33 0 0 chr9 91146680 91146801 -26715826 - AluY SINE Alu -3 308 188 2272 109 6 6 chr9 91147028 91147340 -26715287 + AluSx SINE Alu 1 312 0 315 299 0 9 chr9 91147395 91147502 -26715125 + LTR16C LTR ERVL 376 481 -10 259 108 0 0 chr9 91148319 91148356 -26714271 - L1MCc LINE L1 -4993 1430 1394 314 221 13 13 chr9 91148474 91148551 -26714076 - MLT1K LTR MaLR -18 570 494 2470 65 20 0 chr9 91148575 91148869 -26713758 + AluSc SINE Alu 1 300 -9 872 161 0 0 chr9 91149058 91149188 -26713439 + FLAM_C SINE Alu 3 132 -1 799 245 24 77 chr9 91149204 91149447 -26713180 - L1MCc LINE L1 -4573 2549 2295 2357 110 3 0 chr9 91149447 91149757 -26712870 - AluSq SINE Alu -2 311 1 799 245 24 77 chr9 91149757 91149848 -26712779 - L1MCc LINE L1 -4827 2295 2034 4270 199 12 49 chr9 91149878 91151504 -26711123 - L1MA8 LINE L1 -25 6266 4699 1341 168 44 44 chr9 91151538 91151865 -26710762 + AluJo SINE Alu 9 335 0 1878 149 0 50 chr9 91151865 91152166 -26710461 + AluJb SINE Alu 1 286 -26 34 34 0 17 chr9 91152166 91152184 -26710443 + AT_rich Low_complexity Low_complexity 1 18 -40 2197 118 0 0 chr9 91152184 91152471 -26710156 + AluSx SINE Alu 1 287 -25 34 34 0 17 chr9 91152471 91152511 -26710116 + AT_rich Low_complexity Low_complexity 18 58 0 3091 233 58 40 chr9 91152516 91153898 -26708729 - L1MCc LINE L1 -4892 2049 642 943 269 26 45 chr9 91153983 91154282 -26708345 - L1MCc LINE L1 -5814 609 315 1645 164 60 4 chr9 91154282 91154563 -26708064 + AluJb SINE Alu 1 297 -15 1419 173 6 101 chr9 91154598 91154729 -26707898 - L1MCc LINE L1 -6093 330 188 1214 120 0 5 chr9 91154729 91154913 -26707714 + L1PB1 LINE L1 5969 6151 0 1419 173 6 101 chr9 91154913 91155128 -26707499 - L1MCc LINE L1 -6235 188 17 272 212 34 102 chr9 91155166 91155284 -26707343 - MLT1K LTR MaLR -321 267 158 2029 159 3 0 chr9 91155724 91156026 -26706601 + AluJb SINE Alu 1 303 -9 2189 135 0 0 chr9 91156358 91156662 -26705965 + AluSx SINE Alu 1 304 -8 408 293 60 0 chr9 91156977 91157093 -26705534 - L2 LINE L2 -255 3058 2936 1909 199 8 6 chr9 91157397 91157758 -26704869 - MLT1A1 LTR MaLR 0 365 4 40 21 0 0 chr9 91157842 91157889 -26704738 + AT_rich Low_complexity Low_complexity 1 47 0 2197 181 40 98 chr9 91158128 91158778 -26703849 + LTR9 LTR ERV1 1 612 0 294 290 0 0 chr9 91159036 91159129 -26703498 - L1M4 LINE L1 -2331 3815 3723 2047 136 7 13 chr9 91159138 91159313 -26703314 - AluSx SINE Alu -2 310 136 2904 19 0 0 chr9 91159313 91159629 -26702998 - AluYb8 SINE Alu -2 316 1 2047 136 7 13 chr9 91159629 91159761 -26702866 - AluSx SINE Alu -176 136 5 804 154 7 0 chr9 91159979 91160115 -26702512 + MLT1A1 LTR MaLR 2 138 -227 3814 175 69 56 chr9 91160115 91160942 -26701685 + MER21B LTR ERV1 1 838 -25 1307 201 18 0 chr9 91160963 91161192 -26701435 + MLT1A1 LTR MaLR 133 365 0 225 221 0 125 chr9 91161192 91161253 -26701374 - L2 LINE L2 -65 3248 3204 2719 122 54 5 chr9 91161253 91161680 -26700947 + MER83 LTR ERV1 1 448 0 225 221 0 125 chr9 91161680 91161722 -26700905 - L2 LINE L2 -109 3204 3158 962 268 196 28 chr9 91162735 91162864 -26699763 + L2 LINE L2 1535 1641 -1673 1791 153 89 9 chr9 91162864 91163211 -26699416 + THE1C LTR MaLR 1 375 0 962 268 196 28 chr9 91163211 91163626 -26699001 + L2 LINE L2 1641 2171 -1143 779 80 9 44 chr9 91163733 91163846 -26698781 - MSTA LTR MaLR 0 428 320 1468 235 32 40 chr9 91163847 91163981 -26698646 - MLT1H1 LTR MaLR -188 367 233 1648 123 146 4 chr9 91163981 91164241 -26698386 - AluSg SINE Alu -2 298 2 1468 235 32 40 chr9 91164241 91164476 -26698151 - MLT1H1 LTR MaLR -322 233 1 1058 281 52 8 chr9 91164476 91164843 -26697784 + L2 LINE L2 2315 2697 -617 1362 138 0 5 chr9 91164844 91165040 -26697587 - AluJb SINE Alu -13 299 105 6403 121 20 18 chr9 91165145 91166112 -26696515 + LTR5 LTR ERVK 1 969 0 372 169 0 0 chr9 91166185 91166244 -26696383 - AluJb SINE Alu -205 97 39 1209 303 86 4 chr9 91166246 91166627 -26696000 + L2 LINE L2 2693 3140 -173 2016 162 0 0 chr9 91166627 91166930 -26695697 - AluJb SINE Alu -7 305 3 1209 303 86 4 chr9 91166930 91167120 -26695507 + L2 LINE L2 3140 3313 0 626 146 0 0 chr9 91167727 91167823 -26694804 - AluSg/x SINE Alu -4 306 211 2452 81 3 3 chr9 91168090 91168397 -26694230 + AluSc SINE Alu 1 307 -2 510 275 163 0 chr9 91168443 91168603 -26694024 + MER5A DNA MER1_type 4 189 0 250 211 19 0 chr9 91168743 91168795 -26693832 + MIR SINE MIR 70 122 -140 961 168 0 97 chr9 91169589 91169743 -26692884 + L1MB7 LINE L1 16 143 -6399 2353 116 0 0 chr9 91169743 91170053 -26692574 + AluSx SINE Alu 1 310 -2 961 168 0 97 chr9 91170053 91170124 -26692503 + L1MB7 LINE L1 143 219 -6323 * 8937 200 38 35 chr9 91170122 91171429 -26691198 + L1MB7 LINE L1 3423 4725 -1957 387 0 0 0 chr9 91171429 91171472 -26691155 + (CA)n Simple_repeat Simple_repeat 2 44 0 8937 200 38 35 chr9 91171472 91171611 -26691016 + L1MB7 LINE L1 4725 4862 -1820 1714 188 3 10 chr9 91171611 91171915 -26690712 + AluJo SINE Alu 1 302 -10 8937 200 38 35 chr9 91171915 91172087 -26690540 + L1MB7 LINE L1 4862 5032 -1650 2199 123 0 0 chr9 91172087 91172380 -26690247 + AluSx SINE Alu 2 294 -18 8937 200 38 35 chr9 91172380 91172505 -26690122 + L1MB7 LINE L1 5032 5155 -1527 2036 128 44 0 chr9 91172505 91172802 -26689825 + AluSg SINE Alu 1 310 0 8937 200 38 35 chr9 91172802 91173295 -26689332 + L1MB7 LINE L1 5155 5645 -1037 2020 97 4 0 chr9 91173295 91173554 -26689073 + AluSp SINE Alu 36 295 -18 8937 200 38 35 chr9 91173554 91173677 -26688950 + L1MB7 LINE L1 5645 5766 -916 1762 166 7 14 chr9 91173677 91173973 -26688654 - AluJb SINE Alu -8 304 11 8937 200 38 35 chr9 91173973 91174591 -26688036 + L1MB7 LINE L1 5766 6414 -268 2453 86 3 0 chr9 91174591 91174895 -26687732 - AluSp SINE Alu -8 305 1 8937 200 38 35 chr9 91174895 91175165 -26687462 + L1MB7 LINE L1 6414 6682 0 1639 143 4 8 chr9 91175564 91175815 -26686812 + AluSx SINE Alu 34 283 -29 677 160 8 8 chr9 91175696 91175815 -26686812 + AluSg/x SINE Alu 165 334 0 286 78 20 20 chr9 91175815 91175866 -26686761 + (TAAAG)n Simple_repeat Simple_repeat 4 54 0 217 0 0 0 chr9 91176145 91176169 -26686458 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1858 109 0 51 chr9 91176169 91176445 -26686182 - AluSx SINE Alu -1 304 20 195 324 68 62 chr9 91176457 91176726 -26685901 + L2 LINE L2 2977 3239 -33 1336 162 162 0 chr9 91176744 91176997 -26685630 - AluJb SINE Alu -18 294 1 377 310 11 0 chr9 91177012 91177186 -26685441 + (CATG)n Simple_repeat Simple_repeat 3 178 0 313 267 0 22 chr9 91177201 91177336 -26685291 + (TATG)n Simple_repeat Simple_repeat 2 133 0 744 188 0 0 chr9 91177359 91177476 -26685151 - FLAM_C SINE Alu -16 117 1 257 259 0 0 chr9 91178557 91178615 -26684012 - MIR SINE MIR -36 226 169 860 182 0 0 chr9 91178643 91178786 -26683841 + FLAM_C SINE Alu 1 143 0 327 218 146 27 chr9 91178786 91178896 -26683731 - MIR SINE MIR -139 123 1 2538 44 40 0 chr9 91179005 91179303 -26683324 + AluY SINE Alu 2 311 0 1751 104 4 4 chr9 91179437 91179688 -26682939 - AluY SINE Alu -21 290 40 2387 62 0 0 chr9 91179881 91180171 -26682456 - AluY SINE Alu -21 290 1 235 286 41 31 chr9 91180504 91180602 -26682025 + MIR SINE MIR 18 116 -146 824 181 0 0 chr9 91180872 91181005 -26681622 + AluJb SINE Alu 1 133 -179 252 67 0 0 chr9 91181008 91181038 -26681589 + AluSg/x SINE Alu 219 248 -52 947 199 0 16 chr9 91181038 91181224 -26681403 + AluJo SINE Alu 85 267 -45 479 116 72 0 chr9 91181280 91181349 -26681278 - AluSg/x SINE Alu -22 287 214 926 126 21 14 chr9 91181530 91181673 -26680954 - AluSg SINE Alu -13 297 154 440 147 0 0 chr9 91181692 91181760 -26680867 + AluJb SINE Alu 69 136 -176 559 89 25 0 chr9 91181760 91181839 -26680788 + Alu SINE Alu 220 300 -11 1025 112 0 0 chr9 91181849 91181983 -26680644 - AluSg SINE Alu -159 151 18 1963 125 3 14 chr9 91182019 91182315 -26680312 + AluSc SINE Alu 1 293 -16 212 204 61 0 chr9 91183217 91183266 -26679361 - L2 LINE L2 0 3313 3262 1430 139 0 0 chr9 91183288 91183489 -26679138 - AluSg/x SINE Alu -17 293 93 886 97 127 0 chr9 91183492 91183626 -26679001 - AluJb SINE Alu -161 151 1 2058 156 49 20 chr9 91183730 91184121 -26678506 - L1MC1 LINE L1 0 6333 5932 435 142 11 197 chr9 91184372 91184479 -26678148 - MER104 DNA Tc2 -1724 174 113 2360 101 0 0 chr9 91184479 91184786 -26677841 + AluSg SINE Alu 1 307 -3 435 142 11 197 chr9 91184786 91184861 -26677766 - MER104 DNA Tc2 -1785 113 26 1780 150 10 24 chr9 91184943 91185237 -26677390 - AluJb SINE Alu -22 290 1 1017 134 6 6 chr9 91185592 91185749 -26676878 + AluSp SINE Alu 141 297 -16 243 343 10 10 chr9 91185749 91185848 -26676779 - L2 LINE L2 -618 2696 2598 2121 133 10 3 chr9 91186046 91186340 -26676287 + AluSx SINE Alu 3 298 -14 2231 109 0 0 chr9 91186983 91187277 -26675350 - AluSx SINE Alu -17 295 2 801 306 64 80 chr9 91187280 91187542 -26675085 + ERVL LTR ERVL 1088 1353 -4411 2375 101 0 0 chr9 91187542 91187839 -26674788 + AluSx SINE Alu 1 297 -15 801 306 64 80 chr9 91187839 91188482 -26674145 + ERVL LTR ERVL 1353 1979 -3785 414 288 18 0 chr9 91188616 91188727 -26673900 + ERVL LTR ERVL 2163 2275 -3489 852 162 116 5 chr9 91188728 91188771 -26673856 - Charlie5 DNA MER1_type 0 2585 2548 2522 48 10 0 chr9 91188771 91189061 -26673566 - AluY SINE Alu -17 294 2 852 162 116 5 chr9 91189061 91189215 -26673412 - Charlie5 DNA MER1_type -37 2548 2366 2196 129 0 0 chr9 91189220 91189522 -26673105 + AluSx SINE Alu 3 304 -8 696 113 10 0 chr9 91189600 91189697 -26672930 + FRAM SINE Alu 64 161 -15 495 300 0 20 chr9 91189698 91189848 -26672779 + ERVL LTR ERVL 4807 4953 -811 2272 92 0 0 chr9 91190198 91190490 -26672137 + AluY SINE Alu 4 295 -16 1308 66 0 0 chr9 91190490 91190641 -26671986 + AluSg/x SINE Alu 134 284 -28 1665 172 45 3 chr9 91191391 91191681 -26670946 + AluJo SINE Alu 1 302 -10 3364 130 35 8 chr9 91191834 91191955 -26670672 - MER1A DNA MER1_type -2173 529 413 2255 117 13 0 chr9 91191955 91192263 -26670364 - AluSx SINE Alu 0 312 1 3364 130 35 8 chr9 91192263 91192656 -26669971 - MER1A DNA MER1_type -2289 413 1 2393 99 0 6 chr9 91193356 91193706 -26668921 - AluSg SINE Alu 0 348 1 219 290 14 0 chr9 91193706 91193775 -26668852 + CT-rich Low_complexity Low_complexity 3 72 0 2061 133 0 37 chr9 91193783 91194107 -26668520 - AluSx SINE Alu 0 312 1 644 276 123 25 chr9 91194240 91194378 -26668249 + L1MC/D LINE L1 5445 5612 -2196 2162 39 0 35 chr9 91194378 91194673 -26667954 + AluY SINE Alu 35 320 0 644 276 123 25 chr9 91194673 91194736 -26667891 + L1MC/D LINE L1 5612 5667 -2141 2051 141 3 0 chr9 91194856 91195308 -26667319 + AluSx SINE Alu 1 453 0 2086 114 0 0 chr9 91196035 91196307 -26666320 - AluSq SINE Alu -41 272 1 358 269 67 10 chr9 91197874 91197978 -26664649 + L2 LINE L2 3204 3313 0 22 35 0 0 chr9 91198009 91198038 -26664589 + AT_rich Low_complexity Low_complexity 1 29 0 360 0 0 0 chr9 91198409 91198449 -26664178 + (TG)n Simple_repeat Simple_repeat 2 41 0 2296 82 10 13 chr9 91198490 91198796 -26663831 - AluSc SINE Alu -4 305 1 194 207 35 35 chr9 91199077 91199135 -26663492 - MER5B DNA MER1_type -6 172 115 1944 138 10 3 chr9 91199141 91199438 -26663189 + AluSx SINE Alu 7 305 -7 2363 107 7 0 chr9 91199669 91199977 -26662650 - AluSx SINE Alu -2 310 1 2620 55 0 0 chr9 91200246 91200556 -26662071 - AluY SINE Alu 0 311 2 403 278 74 6 chr9 91200648 91200824 -26661803 - L1ME4a LINE L1 -194 5927 5740 314 302 99 11 chr9 91201452 91201634 -26660993 + MIR SINE MIR 53 250 -12 1295 104 0 16 chr9 91201709 91201892 -26660735 + AluSc SINE Alu 130 309 0 213 261 54 43 chr9 91202147 91202239 -26660388 + MER91C DNA MER1_type 16 108 -32 279 308 98 21 chr9 91202250 91202393 -26660234 - L3 LINE CR1 -298 1279 1126 192 125 0 0 chr9 91202665 91202697 -26659930 + (TTTTC)n Simple_repeat Simple_repeat 2 33 0 266 258 16 0 chr9 91202804 91202866 -26659761 - L2 LINE L2 0 3272 3210 1021 194 9 46 chr9 91202879 91203095 -26659532 + MER63A DNA MER1_type 3 210 0 419 378 41 30 chr9 91203179 91203337 -26659290 - L3 LINE CR1 -1166 411 256 1973 108 0 0 chr9 91203337 91203597 -26659030 + AluSq SINE Alu 1 260 -53 419 378 41 30 chr9 91203597 91203777 -26658850 - L3 LINE CR1 -1321 256 69 1680 189 65 130 chr9 91203990 91204358 -26658269 + MLT1D LTR MaLR 1 391 -114 1927 151 3 3 chr9 91204358 91204656 -26657971 + AluJb SINE Alu 1 298 -14 2194 122 0 6 chr9 91204658 91204970 -26657657 + AluSg SINE Alu 1 310 0 1680 189 65 130 chr9 91204970 91205138 -26657489 + MLT1D LTR MaLR 392 505 0 2247 118 3 0 chr9 91205644 91205948 -26656679 + AluSq SINE Alu 2 306 -7 1793 167 3 25 chr9 91206950 91207267 -26655360 - AluJb SINE Alu 0 312 3 355 250 0 0 chr9 91207512 91207588 -26655039 - HAL1 LINE L1 -354 2153 2078 263 264 11 11 chr9 91207719 91207806 -26654821 - L1MEc LINE L1 -3935 2461 2375 2348 100 0 0 chr9 91207815 91208114 -26654513 - AluSx SINE Alu -13 299 1 239 348 42 17 chr9 91208315 91208433 -26654194 + MIR SINE MIR 33 153 -55 287 271 222 7 chr9 91208790 91208934 -26653693 + MIR SINE MIR 53 227 -35 486 236 200 0 chr9 91209499 91209664 -26652963 + MIR SINE MIR 63 260 -2 2180 132 0 3 chr9 91209943 91210253 -26652374 - AluSx SINE Alu -3 309 1 2008 144 0 25 chr9 91210257 91210577 -26652050 - AluSx SINE Alu 0 312 1 802 161 0 0 chr9 91210615 91210733 -26651894 - FLAM_C SINE Alu -15 118 1 219 36 0 0 chr9 91211157 91211185 -26651442 + (A)n Simple_repeat Simple_repeat 1 28 0 2157 115 7 7 chr9 91211544 91211848 -26650779 - AluSx SINE Alu -8 304 1 245 329 162 16 chr9 91212172 91212549 -26650078 + L2 LINE L2 682 1113 -2201 956 192 0 0 chr9 91213105 91213261 -26649366 - AluJb SINE Alu -21 291 136 315 0 0 0 chr9 91213261 91213296 -26649331 + (TG)n Simple_repeat Simple_repeat 2 36 0 184 340 0 0 chr9 91263581 91263634 -26598993 + MIR SINE MIR 15 67 -195 839 298 118 33 chr9 91263647 91263884 -26598743 - L2 LINE L2 0 3313 3098 1356 152 178 22 chr9 91263884 91264033 -26598594 - AluJo SINE Alu 0 312 188 267 31 0 0 chr9 91264033 91264065 -26598562 + (TTA)n Simple_repeat Simple_repeat 2 33 0 1356 152 178 22 chr9 91264065 91264185 -26598442 - AluJo SINE Alu -124 188 1 839 298 118 33 chr9 91264185 91264403 -26598224 - L2 LINE L2 -215 3098 2819 2346 94 7 0 chr9 91264451 91264750 -26597877 - AluSx SINE Alu -11 301 1 1900 166 0 0 chr9 91265039 91265323 -26597304 + AluJo SINE Alu 1 284 -28 241 316 0 13 chr9 91265344 91265423 -26597204 + GA-rich Low_complexity Low_complexity 1 78 0 850 169 12 6 chr9 91265559 91265719 -26596908 - L1MB7 LINE L1 -19 6165 6005 2050 137 10 10 chr9 91266395 91266701 -26595926 + AluSx SINE Alu 1 306 -6 673 220 0 15 chr9 91266883 91267015 -26595612 - FLAM_A SINE Alu -3 130 1 590 143 143 0 chr9 91267364 91267469 -26595158 - FLAM_C SINE Alu -22 121 2 2103 103 14 10 chr9 91267716 91268007 -26594620 - AluSx SINE Alu -10 302 11 302 313 150 29 chr9 91268024 91268337 -26594290 + L2 LINE L2 1730 2080 -1234 936 203 18 6 chr9 91268676 91268839 -26593788 + FAM SINE Alu 2 166 -9 966 197 30 0 chr9 91268844 91269042 -26593585 + L1MB5 LINE L1 5908 6111 -63 1179 152 6 0 chr9 91269067 91269238 -26593389 + AluSx SINE Alu 1 172 -140 716 143 95 30 chr9 91269718 91269860 -26592767 + MER96B DNA MER1_type? 1 157 -260 2421 97 0 0 chr9 91269860 91270159 -26592468 - AluSx SINE Alu -13 299 1 716 143 95 30 chr9 91270159 91270184 -26592443 + MER96B DNA MER1_type? 157 179 -238 406 304 40 54 chr9 91270240 91270566 -26592061 + L2 LINE L2 2918 3312 -1 658 245 26 7 chr9 91270584 91270739 -26591888 - MIR SINE MIR -34 228 71 483 303 13 7 chr9 91270749 91270904 -26591723 + L2 LINE L2 2531 2686 -628 810 127 0 0 chr9 91270914 91271068 -26591559 - AluSp/q SINE Alu 0 326 173 854 289 119 24 chr9 91271085 91271139 -26591488 + L2 LINE L2 2698 2745 -568 2381 100 3 0 chr9 91271139 91271439 -26591188 + AluSx SINE Alu 1 301 -11 854 289 119 24 chr9 91271439 91271705 -26590922 + L2 LINE L2 2745 2984 -329 1356 152 178 22 chr9 91271705 91271825 -26590802 + AluJo SINE Alu 1 101 -211 267 31 0 0 chr9 91271825 91271857 -26590770 + (TAA)n Simple_repeat Simple_repeat 2 33 0 1356 152 178 22 chr9 91271857 91272006 -26590621 + AluJo SINE Alu 101 312 0 854 289 119 24 chr9 91272006 91272243 -26590384 + L2 LINE L2 2984 3313 0 184 340 0 0 chr9 91272256 91272309 -26590318 - MIR SINE MIR -195 67 15 640 160 10 0 chr9 91272906 91273006 -26589621 - AluSc SINE Alu -43 266 166 * 733 150 42 0 chr9 91273002 91273122 -26589505 - AluSq/x SINE Alu -178 135 11 251 271 29 0 chr9 91273143 91273213 -26589414 + CT-rich Low_complexity Low_complexity 2 73 0 2211 109 0 0 chr9 91273351 91273664 -26588963 - AluSx SINE Alu 0 313 1 308 152 0 76 chr9 91273805 91273884 -26588743 + Charlie8 DNA MER1_type 102 174 -2243 199 236 0 73 chr9 91274328 91274383 -26588244 + MIR SINE MIR 196 246 -16 478 225 0 54 chr9 91274838 91274949 -26587678 + L2 LINE L2 3209 3313 0 231 188 0 0 chr9 91274949 91274997 -26587630 + (TGAA)n Simple_repeat Simple_repeat 2 49 0 543 297 0 66 chr9 91276281 91276493 -26586134 - MIR SINE MIR 0 262 65 2341 94 0 35 chr9 91276525 91276844 -26585783 - AluSx SINE Alu -4 308 1 2358 103 3 0 chr9 91277539 91277839 -26584788 + AluSx SINE Alu 1 301 -11 463 297 0 0 chr9 91278064 91278175 -26584452 - L2 LINE L2 -768 2546 2436 2308 98 0 10 chr9 91278373 91278678 -26583949 - AluSx SINE Alu -10 302 1 2002 112 45 0 chr9 91279214 91279501 -26583126 + AluSx SINE Alu 1 300 -12 2254 117 0 7 chr9 91279570 91279879 -26582748 - AluSq SINE Alu -6 307 1 2267 94 19 3 chr9 91280573 91280881 -26581746 - AluSp SINE Alu 0 313 1 290 311 10 34 chr9 91281017 91281226 -26581401 + HAL1 LINE L1 4 207 -2300 2222 102 3 0 chr9 91281234 91281528 -26581099 + AluSg SINE Alu 1 295 -15 1231 139 37 16 chr9 91281528 91281629 -26580998 + L1MA8 LINE L1 6032 6129 -162 2279 102 3 0 chr9 91281629 91281924 -26580703 - AluSg SINE Alu -14 296 1 1231 139 37 16 chr9 91281924 91282067 -26580560 + L1MA8 LINE L1 6129 6281 -10 1717 186 16 3 chr9 91282468 91282775 -26579852 - AluJb SINE Alu -1 311 1 24 0 0 0 chr9 91282856 91282880 -26579747 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr9 91283141 91283169 -26579458 + AT_rich Low_complexity Low_complexity 1 28 0 231 176 0 0 chr9 91283207 91283258 -26579369 - L1 LINE L1 -3963 2183 2133 224 327 40 0 chr9 91283517 91283618 -26579009 - L2 LINE L2 -50 3263 3159 2228 92 10 0 chr9 91283660 91283954 -26578673 - AluSc SINE Alu -12 297 1 2068 110 17 20 chr9 91284009 91284308 -26578319 - AluSx SINE Alu -14 298 1 21 57 0 0 chr9 91284893 91284928 -26577699 + AT_rich Low_complexity Low_complexity 1 35 0 326 322 41 45 chr9 91285005 91285272 -26577355 + L1ME LINE L1 3092 3357 -2789 8524 117 22 24 chr9 91285758 91285862 -26576765 - Tigger1 DNA MER2_type -1144 1274 1171 2116 108 0 3 chr9 91285862 91286148 -26576479 - AluSx SINE Alu -12 300 16 8524 117 22 24 chr9 91286148 91287039 -26575588 - Tigger1 DNA MER2_type -1247 1171 279 2133 131 7 0 chr9 91287039 91287336 -26575291 + AluSx SINE Alu 5 303 -9 8524 117 22 24 chr9 91287336 91287614 -26575013 - Tigger1 DNA MER2_type -2139 279 2 2227 119 0 3 chr9 91287663 91287974 -26574653 + AluSx SINE Alu 1 310 -2 421 269 11 96 chr9 91287982 91288264 -26574363 + L1ME LINE L1 5091 5348 -798 24 0 0 0 chr9 91288264 91288288 -26574339 + AT_rich Low_complexity Low_complexity 1 24 0 1255 135 5 0 chr9 91288288 91288481 -26574146 - L1PB2 LINE L1 -2 6149 5956 616 164 19 0 chr9 91288481 91288585 -26574042 - U6 snRNA snRNA -1 106 1 525 292 78 41 chr9 91288588 91288998 -26573629 + L1ME LINE L1 5337 5670 -451 26 30 0 0 chr9 91288998 91289031 -26573596 + AT_rich Low_complexity Low_complexity 1 33 0 2255 104 3 3 chr9 91289267 91289566 -26573061 - AluSg SINE Alu -11 299 1 392 277 44 99 chr9 91289965 91290300 -26572327 - MLT1K LTR MaLR 0 588 275 2203 99 3 10 chr9 91290300 91290594 -26572033 + AluSx SINE Alu 1 292 -20 392 277 44 99 chr9 91290594 91290641 -26571986 - MLT1K LTR MaLR -313 275 227 212 313 169 0 chr9 91290641 91290724 -26571903 + L2 LINE L2 3173 3269 -3 723 247 17 28 chr9 91290869 91291047 -26571580 + MIR SINE MIR 36 211 -51 671 296 33 33 chr9 91292048 91292288 -26570339 + MIR SINE MIR 17 256 -6 2033 144 7 0 chr9 91292292 91292591 -26570036 - AluSx SINE Alu -11 301 1 2246 99 3 0 chr9 91293214 91293506 -26569121 - AluSx SINE Alu -17 295 3 312 27 0 0 chr9 91293628 91293665 -26568962 + (TG)n Simple_repeat Simple_repeat 2 38 0 2233 113 0 0 chr9 91293680 91293973 -26568654 - AluSx SINE Alu -19 293 1 1451 144 0 5 chr9 91294103 91294311 -26568316 - AluJb SINE Alu -21 291 85 224 213 16 16 chr9 91294795 91294856 -26567771 + MIR SINE MIR 162 222 -40 2270 117 0 0 chr9 91295067 91295366 -26567261 + AluSx SINE Alu 1 299 -13 2150 133 3 0 chr9 91295627 91295928 -26566699 - AluSq SINE Alu -11 302 1 1032 197 30 0 chr9 91295953 91296151 -26566476 - L1MB5 LINE L1 -63 6111 5908 899 203 18 6 chr9 91296156 91296319 -26566308 - FAM SINE Alu -9 166 2 236 273 113 104 chr9 91296658 91296979 -26565648 - L2 LINE L2 -1234 2080 1763 2383 92 7 0 chr9 91296979 91297284 -26565343 + AluSx SINE Alu 3 309 -3 236 273 113 104 chr9 91297284 91297317 -26565310 - L2 LINE L2 -1551 1763 1732 1952 149 3 10 chr9 91297317 91297625 -26565002 - AluJb SINE Alu -6 306 1 236 273 113 104 chr9 91297625 91297731 -26564896 - L2 LINE L2 -1582 1732 1615 23 0 0 0 chr9 91298341 91298364 -26564263 + AT_rich Low_complexity Low_complexity 1 23 0 363 264 86 40 chr9 91298965 91299139 -26563488 - MIR SINE MIR -45 217 36 14366 121 21 40 chr9 91299204 91300052 -26562575 + Tigger1 DNA MER2_type 2 865 -1553 1717 195 0 21 chr9 91300052 91300393 -26562234 + AluJb SINE Alu 1 335 0 14366 121 21 40 chr9 91300393 91301150 -26561477 + Tigger1 DNA MER2_type 865 1551 -867 2374 96 0 7 chr9 91301150 91301452 -26561175 + AluSq SINE Alu 1 300 -13 14366 121 21 40 chr9 91301452 91302198 -26560429 + Tigger1 DNA MER2_type 1551 2310 -108 1029 173 0 0 chr9 91302204 91302372 -26560255 - AluJo SINE Alu -16 296 129 682 191 8 23 chr9 91302417 91302548 -26560079 - AluJo SINE Alu -169 133 5 714 145 26 0 chr9 91302550 91302667 -26559960 + Tigger1 DNA MER2_type 2299 2418 0 1563 201 52 3 chr9 91303283 91303591 -26559036 - MER58B DNA MER1_type 0 341 19 953 208 0 0 chr9 91305034 91305202 -26557425 - FRAM SINE Alu -8 168 1 270 268 14 14 chr9 91305319 91305390 -26557237 - MLT1L LTR MaLR -332 283 213 21 0 0 0 chr9 91305572 91305593 -26557034 + AT_rich Low_complexity Low_complexity 1 21 0 2129 119 3 0 chr9 91305727 91306050 -26556577 - AluSq SINE Alu 0 324 1 1704 205 28 3 chr9 91306404 91306731 -26555896 + MER58B DNA MER1_type 6 340 -1 216 0 0 0 chr9 91307367 91307391 -26555236 + (ATG)n Simple_repeat Simple_repeat 2 25 0 554 295 114 4 chr9 91307410 91307637 -26554990 - MIR SINE MIR -10 252 1 2359 87 0 25 chr9 91307931 91308252 -26554375 - AluSq SINE Alu 0 313 1 1798 134 32 29 chr9 91309186 91309463 -26553164 - AluJb SINE Alu -23 289 12 315 309 121 18 chr9 91309485 91309925 -26552702 - L1M4 LINE L1 -918 5228 4744 1799 189 3 0 chr9 91309933 91310229 -26552398 - AluJb SINE Alu -15 297 1 2186 110 7 0 chr9 91310236 91310556 -26552071 - AluSx SINE Alu 0 322 1 723 223 16 48 chr9 91311040 91311228 -26551399 + AluJb SINE Alu 120 301 -11 816 189 0 6 chr9 91311472 91311631 -26550996 + MER5B DNA MER1_type 1 158 -20 2461 58 0 19 chr9 91311690 91311999 -26550628 + AluY SINE Alu 9 311 0 21 36 0 0 chr9 91312249 91312277 -26550350 + AT_rich Low_complexity Low_complexity 1 28 0 969 89 0 0 chr9 91312355 91312479 -26550148 + FLAM_C SINE Alu 10 133 -10 2235 102 7 13 chr9 91312943 91313248 -26549379 - AluSq SINE Alu -10 303 1 430 306 72 34 chr9 91313286 91313521 -26549106 + MIR SINE MIR 16 259 -3 1866 155 21 0 chr9 91313568 91313852 -26548775 + AluJb SINE Alu 1 290 -22 2492 48 0 7 chr9 91314408 91314728 -26547899 - AluY SINE Alu 0 311 1 2064 143 0 10 chr9 91314730 91315037 -26547590 - AluSx SINE Alu -8 304 1 521 201 20 78 chr9 91315115 91315319 -26547308 - L1MEd LINE L1 -4943 1176 985 2087 138 14 0 chr9 91315404 91315693 -26546934 + AluSx SINE Alu 1 293 -19 577 282 46 10 chr9 91315953 91316148 -26546479 - L1MC4a LINE L1 -1762 6046 5845 2311 102 10 3 chr9 91316218 91316521 -26546106 - AluSq SINE Alu -6 307 3 650 239 104 38 chr9 91316522 91316811 -26545816 - L1MEd LINE L1 -5240 879 572 225 261 77 15 chr9 91316983 91317048 -26545579 - L1P LINE L1 -1355 4791 4723 2770 126 9 34 chr9 91317130 91317567 -26545060 + MSTB LTR MaLR 1 426 0 29 47 0 0 chr9 91318128 91318171 -26544456 + AT_rich Low_complexity Low_complexity 1 43 0 2393 67 0 0 chr9 91318171 91318470 -26544157 - L1PA8 LINE L1 -17 6155 5857 329 324 95 27 chr9 91318608 91318904 -26543723 + L1 LINE L1 3729 4044 -2102 435 269 181 41 chr9 91318940 91319211 -26543416 + L1 LINE L1 4137 4445 -1701 2192 94 25 0 chr9 91319363 91319649 -26542978 - AluY SINE Alu -14 297 5 342 147 43 9 chr9 91320315 91320431 -26542196 + (CA)n Simple_repeat Simple_repeat 1 120 0 290 270 81 54 chr9 91321079 91321227 -26541400 - MARNA DNA Mariner -129 457 306 2043 112 33 0 chr9 91321263 91321567 -26541060 + L1MA2 LINE L1 5991 6304 0 501 270 43 54 chr9 91321662 91321847 -26540780 - MARNA DNA Mariner -352 234 52 2326 104 0 0 chr9 91322673 91322970 -26539657 + AluSx SINE Alu 1 297 -15 3277 147 13 27 chr9 91323142 91323874 -26538753 + L1MA9 LINE L1 5097 5824 -488 485 167 0 62 chr9 91323876 91323972 -26538655 + FLAM_A SINE Alu 1 90 -52 323 133 0 17 chr9 91324009 91324069 -26538558 + (GGAGAA)n Simple_repeat Simple_repeat 5 63 0 2638 131 54 21 chr9 91324078 91324558 -26538069 + L1MA9 LINE L1 5817 6312 0 1988 130 0 29 chr9 91327852 91328160 -26534467 + AluSx SINE Alu 1 299 -13 229 235 222 0 chr9 91328204 91328285 -26534342 + L1 LINE L1 4735 4833 -1313 1913 138 31 0 chr9 91328344 91328635 -26533992 - AluJb SINE Alu -12 300 1 891 140 15 0 chr9 91328638 91328774 -26533853 - AluJb SINE Alu -174 138 1 21 36 0 0 chr9 91328880 91328908 -26533719 + AT_rich Low_complexity Low_complexity 1 28 0 339 248 167 34 chr9 91328944 91329178 -26533449 + L1MC/D LINE L1 5117 5381 -765 248 311 199 18 chr9 91329184 91329515 -26533112 + L1MC/D LINE L1 5404 5794 -2014 23 33 0 0 chr9 91330047 91330077 -26532550 + AT_rich Low_complexity Low_complexity 1 30 0 1400 124 29 14 chr9 91330519 91330728 -26531899 - AluJo SINE Alu -23 289 78 2401 81 0 0 chr9 91331142 91331437 -26531190 + AluY SINE Alu 1 295 -16 2135 129 3 0 chr9 91332092 91332402 -26530225 + AluSx SINE Alu 2 312 0 487 236 86 0 chr9 91334611 91334751 -26527876 - MIR SINE MIR -10 252 101 4206 116 8 76 chr9 91334872 91335612 -26527015 + LTR8 LTR ERV1 1 690 -1 2191 109 3 0 chr9 91335725 91336046 -26526581 - AluSx SINE Alu 0 322 1 595 254 66 62 chr9 91336221 91336465 -26526162 + MIR SINE MIR 18 262 0 415 222 35 28 chr9 91336504 91336648 -26525979 + L1 LINE L1 4882 5026 -1120 207 0 0 0 chr9 91337085 91337108 -26525519 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 209 301 106 55 chr9 91337252 91337451 -26525176 - L3 LINE CR1 -903 674 466 25 0 0 0 chr9 91338645 91338670 -26523957 + AT_rich Low_complexity Low_complexity 1 25 0 2333 187 70 64 chr9 91338851 91338968 -26523659 - MLT1E3 LTR MaLR -9 615 500 2098 139 133 13 chr9 91338968 91339350 -26523277 - MSTA LTR MaLR 0 428 1 2333 187 70 64 chr9 91339350 91339465 -26523162 - MLT1E3 LTR MaLR -124 500 387 1570 173 51 93 chr9 91339465 91339916 -26522711 + MSTB1 LTR MaLR 1 432 0 2333 187 70 64 chr9 91339916 91340293 -26522334 - MLT1E3 LTR MaLR -237 387 1 245 194 0 16 chr9 91340321 91340383 -26522244 + (TA)n Simple_repeat Simple_repeat 2 62 0 188 274 41 14 chr9 91341152 91341225 -26521402 - L2 LINE L2 -817 2497 2423 2337 67 3 33 chr9 91343355 91343655 -26518972 - AluSp SINE Alu 0 313 23 275 312 8 40 chr9 91344651 91344776 -26517851 + MER117 DNA MER1_type 1 121 -76 27 0 0 0 chr9 91345130 91345157 -26517470 + AT_rich Low_complexity Low_complexity 1 27 0 2355 108 3 0 chr9 91345180 91345485 -26517142 + AluSx SINE Alu 2 307 -5 310 319 112 34 chr9 91345728 91346023 -26516604 - L2 LINE L2 -596 2718 2401 5007 158 27 44 chr9 91346034 91346249 -26516378 + L1MB3 LINE L1 4698 4915 -1268 2048 138 0 7 chr9 91346249 91346546 -26516081 + AluJo SINE Alu 1 295 -17 5007 158 27 44 chr9 91346546 91347091 -26515536 + L1MB3 LINE L1 4915 5468 -715 1740 181 0 3 chr9 91347091 91347373 -26515254 + AluJb SINE Alu 2 282 -30 5007 158 27 44 chr9 91347373 91347925 -26514702 + L1MB3 LINE L1 5468 5980 -203 1882 169 0 19 chr9 91347925 91348233 -26514394 + AluJb SINE Alu 1 302 -10 5007 158 27 44 chr9 91348233 91348432 -26514195 + L1MB3 LINE L1 5980 6181 -2 234 0 0 0 chr9 91348657 91348683 -26513944 + (TG)n Simple_repeat Simple_repeat 1 26 0 951 169 7 0 chr9 91348683 91348831 -26513796 - AluJb SINE Alu -31 281 133 1571 197 8 42 chr9 91348918 91349274 -26513353 + MLT1A2 LTR MaLR 27 370 -4 321 229 69 107 chr9 91350682 91350729 -26511898 - L2 LINE L2 0 3313 3266 2443 97 0 0 chr9 91350729 91351038 -26511589 - AluSc SINE Alu 0 309 1 321 229 69 107 chr9 91351038 91351121 -26511506 - L2 LINE L2 -47 3266 3188 1655 131 0 16 chr9 91352200 91352445 -26510182 - AluSg/x SINE Alu -5 307 67 362 140 0 0 chr9 91352486 91352543 -26510084 - AluS SINE Alu -242 57 1 333 266 24 32 chr9 91352928 91353052 -26509575 + MER5A DNA MER1_type 31 160 -25 739 192 34 17 chr9 91354360 91354537 -26508090 + AluSp SINE Alu 2 181 -132 2024 149 0 3 chr9 91354925 91355227 -26507400 + AluSx SINE Alu 1 301 -11 1366 176 132 19 chr9 91355664 91355982 -26506645 + L1MB4 LINE L1 5826 6179 -1 2247 145 3 12 chr9 91356686 91357024 -26505603 + MER1B DNA MER1_type 3 337 0 2361 93 0 0 chr9 91357110 91357410 -26505217 + AluSx SINE Alu 5 304 -8 411 204 91 85 chr9 91357463 91357639 -26504988 - MIR SINE MIR -46 216 40 2180 119 0 7 chr9 91357753 91358055 -26504572 + AluSx SINE Alu 1 300 -12 258 271 15 6 chr9 91358247 91358422 -26504205 + MIR SINE MIR 114 254 -8 294 313 151 26 chr9 91358439 91358631 -26503996 - MIR SINE MIR -18 244 29 2261 115 0 6 chr9 91359376 91359690 -26502937 - AluSx SINE Alu 0 312 1 496 200 30 0 chr9 91359879 91359979 -26502648 + MLT1K LTR MaLR 481 583 -5 249 283 132 63 chr9 91360530 91360735 -26501892 - L2 LINE L2 -7 3265 3047 1743 162 38 3 chr9 91360940 91361230 -26501397 + AluJb SINE Alu 1 300 -12 201 309 0 0 chr9 91362131 91362186 -26500441 - L3b LINE CR1 -263 1320 1266 201 74 0 0 chr9 91362186 91362213 -26500414 + (CCCCG)n Simple_repeat Simple_repeat 3 29 0 2358 102 0 3 chr9 91362505 91362819 -26499808 - AluSp SINE Alu 0 313 1 833 211 6 6 chr9 91363495 91363661 -26498966 - FRAM SINE Alu 0 166 1 1852 170 7 13 chr9 91363691 91363997 -26498630 + AluJo SINE Alu 1 304 -8 28 29 0 0 chr9 91364607 91364642 -26497985 + AT_rich Low_complexity Low_complexity 1 35 0 2037 101 57 17 chr9 91364653 91364949 -26497678 - AluSg SINE Alu -2 308 1 219 125 0 0 chr9 91365963 91366003 -26496624 + (TC)n Simple_repeat Simple_repeat 2 41 0 1774 131 7 54 chr9 91366126 91366424 -26496203 + AluSx SINE Alu 10 293 -19 2231 125 7 0 chr9 91366448 91366753 -26495874 + AluSx SINE Alu 1 307 -5 2115 278 128 59 chr9 91367816 91367957 -26494670 - L2 LINE L2 -33 3280 3150 1841 131 3 62 chr9 91367957 91368263 -26494364 + AluJo SINE Alu 1 288 -24 2115 278 128 59 chr9 91368263 91369942 -26492685 - L2 LINE L2 -163 3150 1322 2077 122 36 3 chr9 91370012 91370315 -26492312 - AluSq SINE Alu 0 313 1 2209 111 10 7 chr9 91370575 91370873 -26491754 + AluJo SINE Alu 1 299 -13 2146 129 6 3 chr9 91371313 91371624 -26491003 - AluJb SINE Alu 0 312 1 35 24 0 0 chr9 91371742 91371784 -26490843 + AT_rich Low_complexity Low_complexity 1 42 0 2116 141 3 0 chr9 91372117 91372414 -26490213 - AluSx SINE Alu -14 298 1 2417 103 0 0 chr9 91372918 91373228 -26489399 + AluSx SINE Alu 1 310 -2 305 306 36 23 chr9 91374099 91374363 -26488264 + L1M4 LINE L1 3589 3852 -2294 293 294 83 44 chr9 91374439 91374643 -26487984 + L1M4 LINE L1 3954 4165 -1981 2052 194 65 65 chr9 91374786 91375225 -26487402 + MLT1D LTR MaLR 1 442 -63 1766 141 12 77 chr9 91375225 91375551 -26487076 - AluJo SINE Alu -7 305 1 2052 194 65 65 chr9 91375551 91375616 -26487011 + MLT1D LTR MaLR 441 505 0 2262 109 0 0 chr9 91375747 91376040 -26486587 - AluSx SINE Alu -19 293 1 998 217 81 46 chr9 91376042 91376365 -26486262 - HsTC2 DNA Tc2 -94 1804 1295 784 271 95 29 chr9 91376381 91376687 -26485940 - HsTC2 DNA Tc2 -1570 328 3 351 259 54 62 chr9 91376688 91376912 -26485715 + L1MC4a LINE L1 5681 5902 -1906 30 27 0 0 chr9 91376928 91376965 -26485662 + AT_rich Low_complexity Low_complexity 1 37 0 242 325 84 0 chr9 91377537 91377620 -26485007 + L2 LINE L2 3136 3225 -47 844 266 39 23 chr9 91377839 91378095 -26484532 - MIR SINE MIR 0 262 3 476 111 0 0 chr9 91378383 91378480 -26484147 + AluJ/FRAM SINE Alu 221 317 0 1780 135 36 46 chr9 91378534 91378838 -26483789 + AluJo SINE Alu 1 301 -11 528 122 0 0 chr9 91379014 91379096 -26483531 + (GAAA)n Simple_repeat Simple_repeat 1 82 0 210 37 0 0 chr9 91379335 91379362 -26483265 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 238 87 43 0 chr9 91379486 91379532 -26483095 + (TA)n Simple_repeat Simple_repeat 1 48 0 2107 114 3 32 chr9 91379685 91379993 -26482634 - AluSx SINE Alu -13 299 1 887 290 87 28 chr9 91380144 91380754 -26481873 + HAL1b LINE L1 1 646 -702 272 344 26 7 chr9 91380755 91380909 -26481718 + HAL1b LINE L1 668 824 -524 1504 158 46 46 chr9 91381016 91381324 -26481303 + AluJo SINE Alu 1 308 0 1717 186 0 3 chr9 91381336 91381648 -26480979 + AluJo SINE Alu 1 311 0 231 271 30 23 chr9 91381858 91381991 -26480636 + L1M4 LINE L1 2309 2442 -3704 2363 92 26 0 chr9 91382050 91382354 -26480273 + AluSx SINE Alu 1 312 0 518 183 24 9 chr9 91382395 91382555 -26480072 - MER58B DNA MER1_type -11 330 1 669 298 62 38 chr9 91382563 91383203 -26479424 + L1M4 LINE L1 3162 3817 -2329 25 65 0 0 chr9 91383225 91383271 -26479356 + AT_rich Low_complexity Low_complexity 1 46 0 691 241 60 12 chr9 91386547 91386713 -26475914 + MER5A DNA MER1_type 9 182 -7 491 254 33 8 chr9 91388754 91388876 -26473751 + L2 LINE L2 2834 2958 -355 1867 168 13 0 chr9 91389047 91389350 -26473277 - AluJb SINE Alu -5 307 1 2022 133 7 7 chr9 91389555 91389849 -26472778 + AluSx SINE Alu 1 294 -18 2398 82 3 3 chr9 91389908 91390211 -26472416 - AluSq SINE Alu -10 303 1 202 270 16 16 chr9 91390862 91390925 -26471702 - MIR3 SINE MIR -142 66 4 390 21 0 0 chr9 91391528 91391575 -26471052 + (TC)n Simple_repeat Simple_repeat 2 48 0 1659 158 50 18 chr9 91391575 91391853 -26470774 - AluJo SINE Alu -25 287 1 351 333 74 39 chr9 91392249 91392534 -26470093 + L2 LINE L2 552 846 -2468 2487 70 0 0 chr9 91392697 91392996 -26469631 - AluY SINE Alu -10 301 3 2133 125 3 0 chr9 91393224 91393521 -26469106 + AluSx SINE Alu 1 298 -14 297 0 0 0 chr9 91393531 91393564 -26469063 + (CA)n Simple_repeat Simple_repeat 2 34 0 2020 144 0 3 chr9 91393752 91394051 -26468576 + AluSx SINE Alu 1 298 -14 201 244 141 39 chr9 91394063 91394141 -26468486 - L2 LINE L2 -16 3256 3171 2329 96 3 3 chr9 91394237 91394549 -26468078 + AluSp SINE Alu 1 312 -1 302 295 105 9 chr9 91395086 91395191 -26467436 + MIR SINE MIR 32 146 -62 188 139 139 0 chr9 91396611 91396647 -26465980 - MER5A DNA MER1_type 0 189 149 1501 168 89 11 chr9 91396707 91396987 -26465640 - AluJb SINE Alu -6 306 5 21 36 0 0 chr9 91397021 91397049 -26465578 + AT_rich Low_complexity Low_complexity 1 28 0 267 31 0 0 chr9 91397065 91397097 -26465530 + (TAA)n Simple_repeat Simple_repeat 1 32 0 2053 136 0 0 chr9 91398110 91398396 -26464231 + AluSx SINE Alu 1 286 -26 310 279 98 33 chr9 91398457 91398579 -26464048 + L2 LINE L2 3184 3313 0 424 296 91 66 chr9 91398593 91398658 -26463969 + HAL1b LINE L1 330 392 -956 1821 139 66 0 chr9 91398658 91398946 -26463681 - AluSx SINE Alu -5 307 1 424 296 91 66 chr9 91398946 91399276 -26463351 + HAL1b LINE L1 392 735 -613 1846 151 34 0 chr9 91399658 91399956 -26462671 + AluJb SINE Alu 3 310 -2 1015 172 5 0 chr9 91399960 91400146 -26462481 + AluSg/x SINE Alu 121 307 -5 1997 152 13 3 chr9 91401169 91401510 -26461117 + AluJb SINE Alu 1 344 0 341 314 85 41 chr9 91401767 91402038 -26460589 + L1M4 LINE L1 3392 3674 -2472 220 366 10 20 chr9 91402218 91402319 -26460308 - MIR SINE MIR -89 119 20 2100 142 0 0 chr9 91402740 91403036 -26459591 + AluSx SINE Alu 1 296 -16 1692 152 48 28 chr9 91403071 91403360 -26459267 - AluJo SINE Alu -13 299 5 2057 128 0 26 chr9 91403655 91403967 -26458660 - AluSx SINE Alu -8 304 1 2300 106 6 3 chr9 91405026 91405337 -26457290 + AluSx SINE Alu 1 312 0 2122 129 0 0 chr9 91406323 91406632 -26455995 + AluSx SINE Alu 1 309 0 1018 203 0 48 chr9 91406644 91406871 -26455756 + L1M4 LINE L1 4190 4405 -1741 2278 122 0 0 chr9 91406874 91407186 -26455441 + AluSx SINE Alu 1 312 0 2162 136 0 7 chr9 91408202 91408512 -26454115 + AluSx SINE Alu 5 312 0 327 291 108 19 chr9 91409031 91409189 -26453438 - MARNA DNA Mariner -18 568 397 2066 147 0 0 chr9 91409531 91409830 -26452797 + AluSx SINE Alu 1 299 -13 215 286 27 18 chr9 91410186 91410298 -26452329 + (TATG)n Simple_repeat Simple_repeat 4 116 0 267 277 133 0 chr9 91410348 91410431 -26452196 + L2 LINE L2 3144 3237 -35 463 338 26 21 chr9 91410472 91410706 -26451921 - L2 LINE L2 -1319 1995 1761 579 316 25 28 chr9 91410758 91411043 -26451584 - MARNA DNA Mariner -251 335 52 2311 94 0 0 chr9 91411161 91411458 -26451169 - AluSx SINE Alu -15 297 1 361 200 123 39 chr9 91411552 91411682 -26450945 - MER113 DNA MER1_type? -380 141 1 575 253 20 20 chr9 91411719 91411865 -26450762 + MIR SINE MIR 46 191 -71 1466 147 20 20 chr9 91412741 91412992 -26449635 + AluJo SINE Alu 49 299 -13 253 202 20 121 chr9 91414122 91414221 -26448406 + L2 LINE L2 3224 3312 -1 415 226 81 66 chr9 91414667 91414848 -26447779 - MIR SINE MIR -46 216 36 1757 154 25 7 chr9 91414848 91415133 -26447494 - AluJo SINE Alu -22 290 1 977 127 8 0 chr9 91415133 91415267 -26447360 - AluSq/x SINE Alu -178 135 1 3001 121 53 51 chr9 91415283 91415769 -26446858 + L1MB2 LINE L1 5623 6107 -64 2626 155 34 2 chr9 91415769 91416182 -26446445 - MSTB LTR MaLR 0 426 1 2135 111 0 26 chr9 91416189 91416495 -26446132 + AluSx SINE Alu 1 298 -14 3001 121 53 51 chr9 91416495 91416547 -26446080 + L1MB2 LINE L1 6112 6170 -1 334 314 44 63 chr9 91417561 91417813 -26444814 + HAL1 LINE L1 1446 1692 -815 29 47 0 0 chr9 91418003 91418046 -26444581 + AT_rich Low_complexity Low_complexity 1 43 0 219 274 83 60 chr9 91419242 91419326 -26443301 + L3 LINE CR1 1431 1516 -61 379 291 22 67 chr9 91419334 91419513 -26443114 - MER5B DNA MER1_type -3 175 5 2155 117 3 7 chr9 91419761 91420061 -26442566 + AluSx SINE Alu 1 299 -13 392 234 194 57 chr9 91420262 91420437 -26442190 - L2 LINE L2 -1 3312 3114 1367 179 0 4 chr9 91420499 91420733 -26441894 - AluJo SINE Alu -37 275 43 2198 125 6 3 chr9 91420754 91421065 -26441562 - AluSx SINE Alu 0 312 1 1750 121 4 4 chr9 91421072 91421312 -26441315 - AluSx SINE Alu -19 293 54 1150 332 36 27 chr9 91421321 91421919 -26440708 - L2 LINE L2 -244 3069 2463 1809 170 0 3 chr9 91421987 91422276 -26440351 - AluJb SINE Alu -16 296 9 1986 147 7 0 chr9 91422764 91423057 -26439570 + AluSx SINE Alu 1 295 -17 206 260 26 0 chr9 91423058 91423135 -26439492 + GA-rich Low_complexity Low_complexity 1 79 0 785 79 42 18 chr9 91423149 91423314 -26439313 + GA-rich Low_complexity Low_complexity 1 169 0 1696 129 55 48 chr9 91423413 91423723 -26438904 + AluJb SINE Alu 1 312 0 320 284 71 57 chr9 91423724 91423865 -26438762 - MIR SINE MIR -92 170 28 6327 93 15 53 chr9 91425653 91425667 -26436960 + L1PA16 LINE L1 4693 4706 -1460 1466 156 80 42 chr9 91425667 91425955 -26436672 + AluJo SINE Alu 1 299 -13 6327 93 15 53 chr9 91425955 91427449 -26435178 + L1PA16 LINE L1 4706 6166 0 2149 107 17 0 chr9 91427457 91427757 -26434870 + AluSq SINE Alu 1 305 -8 475 313 71 22 chr9 91428452 91428676 -26433951 - MIR SINE MIR -17 245 11 1803 176 3 19 chr9 91428892 91429205 -26433422 - AluJo SINE Alu -4 308 1 404 271 13 60 chr9 91429248 91429399 -26433228 - MER117 DNA MER1_type 0 197 54 243 0 0 0 chr9 91429935 91429962 -26432665 + (GGA)n Simple_repeat Simple_repeat 1 27 0 644 144 31 0 chr9 91430469 91430566 -26432061 + U6 snRNA snRNA 2 101 -6 2209 96 3 7 chr9 91430612 91430904 -26431723 + AluSx SINE Alu 1 291 -21 327 104 0 0 chr9 91430904 91430952 -26431675 + (TA)n Simple_repeat Simple_repeat 2 49 0 704 223 62 26 chr9 91431132 91431325 -26431302 - AluSg/x SINE Alu -14 296 97 1677 146 94 17 chr9 91432040 91432177 -26430450 + AluJb SINE Alu 1 126 -186 2796 22 0 0 chr9 91432177 91432488 -26430139 + AluYb8 SINE Alu 1 311 -7 1677 146 94 17 chr9 91432488 91432638 -26429989 + AluJb SINE Alu 126 310 -2 325 269 86 0 chr9 91432725 91432818 -26429809 + MIR SINE MIR 2 102 -160 3010 127 33 80 chr9 91432818 91433416 -26429211 - MER7C DNA MER2_type 0 602 33 193 243 0 0 chr9 91433417 91433454 -26429173 + MIR SINE MIR 198 234 -28 2036 139 0 0 chr9 91433491 91433778 -26428849 + AluSx SINE Alu 1 287 -25 301 92 120 0 chr9 91433779 91433921 -26428706 + (TA)n Simple_repeat Simple_repeat 2 160 0 231 211 0 0 chr9 91433965 91434017 -26428610 - LTR66 LTR ERVL -171 439 388 307 329 68 28 chr9 91434056 91434308 -26428319 + L1M4 LINE L1 4023 4284 -1862 2223 110 16 7 chr9 91435068 91435377 -26427250 - AluSx SINE Alu 0 312 1 200 233 0 0 chr9 91435735 91435778 -26426849 + A-rich Low_complexity Low_complexity 1 43 0 198 107 0 0 chr9 91435920 91435948 -26426679 + L2 LINE L2 3232 3259 -13 2286 113 3 0 chr9 91436054 91436355 -26426272 + AluSx SINE Alu 1 302 -10 576 142 142 0 chr9 91436601 91436707 -26425920 + FLAM_C SINE Alu 1 121 -12 624 211 0 16 chr9 91437056 91437179 -26425448 + FLAM_A SINE Alu 1 121 -12 2018 137 10 10 chr9 91437370 91437676 -26424951 - AluSx SINE Alu -6 306 1 850 169 12 6 chr9 91438352 91438512 -26424115 + L1MB7 LINE L1 6005 6165 -19 241 316 0 13 chr9 91438648 91438727 -26423900 + CT-rich Low_complexity Low_complexity 1 78 0 1876 166 0 0 chr9 91438748 91439032 -26423595 - AluJo SINE Alu -28 284 1 1834 93 4 48 chr9 91439321 91439590 -26423037 + AluSc SINE Alu 1 257 -52 2256 101 0 3 chr9 91439590 91439886 -26422741 + AluSc SINE Alu 5 300 -9 2085 126 7 3 chr9 91440722 91441015 -26421612 + AluSx SINE Alu 1 294 -18 263 264 14 40 chr9 91441166 91441314 -26421313 - L1MC4 LINE L1 -190 7852 7709 664 256 13 6 chr9 91442205 91442361 -26420266 - MER58A DNA MER1_type 0 160 4 24 0 0 0 chr9 91442600 91442624 -26420003 + AT_rich Low_complexity Low_complexity 1 24 0 3718 114 16 72 chr9 91442624 91443034 -26419593 - Tigger3b DNA MER2_type -1797 1231 800 1715 157 0 51 chr9 91443034 91443347 -26419280 - AluJo SINE Alu -15 297 1 3718 114 16 72 chr9 91443347 91443411 -26419216 - Tigger3b DNA MER2_type -2228 800 734 2273 109 3 0 chr9 91443411 91443705 -26418922 + AluSq SINE Alu 1 295 -18 3718 114 16 72 chr9 91443705 91443716 -26418911 - Tigger3b DNA MER2_type -2294 734 724 2442 76 0 13 chr9 91443716 91443852 -26418775 + AluSx SINE Alu 1 137 -175 2404 84 13 0 chr9 91443852 91444150 -26418477 + AluSp SINE Alu 1 302 -11 2442 76 0 13 chr9 91444150 91444315 -26418312 + AluSx SINE Alu 137 298 -14 3718 114 16 72 chr9 91444315 91444489 -26418138 - Tigger3b DNA MER2_type -2304 724 606 1612 183 0 40 chr9 91444489 91444811 -26417816 - AluJo SINE Alu -3 309 1 3718 114 16 72 chr9 91444811 91444829 -26417798 - Tigger3b DNA MER2_type -2422 606 589 1090 166 0 16 chr9 91444836 91445023 -26417604 - FRAM SINE Alu 0 176 1 3498 111 20 76 chr9 91445040 91445080 -26417547 - Tigger3b DNA MER2_type -2458 570 529 1819 185 0 3 chr9 91445080 91445377 -26417250 + AluJb SINE Alu 1 296 -16 3498 111 20 76 chr9 91445377 91445709 -26416918 - Tigger3b DNA MER2_type -2499 529 242 2422 93 0 0 chr9 91445709 91446010 -26416617 - AluSq SINE Alu -12 301 1 3498 111 20 76 chr9 91446010 91446240 -26416387 - Tigger3b DNA MER2_type -2786 242 1 1850 133 3 75 chr9 91446303 91446635 -26415992 + AluJb SINE Alu 1 308 -4 2325 92 7 0 chr9 91447065 91447359 -26415268 + AluSx SINE Alu 1 296 -16 381 145 0 0 chr9 91447713 91447775 -26414852 - Alu SINE Alu 0 302 241 865 159 0 0 chr9 91447776 91447902 -26414725 + FLAM_C SINE Alu 1 126 -17 636 202 8 12 chr9 91447902 91448150 -26414477 + GA-rich Low_complexity Low_complexity 1 247 0 519 133 20 31 chr9 91448174 91448272 -26414355 + AluJ/FRAM SINE Alu 215 311 -1 2329 92 3 0 chr9 91448278 91448572 -26414055 + AluSg SINE Alu 1 295 -15 1181 170 0 19 chr9 91448574 91448786 -26413841 - AluJo SINE Alu -83 229 22 2000 167 0 0 chr9 91449909 91450220 -26412407 - AluJb SINE Alu -1 311 1 243 350 20 0 chr9 91450380 91450480 -26412147 + L2 LINE L2 2949 3050 -222 1859 171 0 3 chr9 91450490 91450788 -26411839 - AluJb SINE Alu -15 297 1 324 293 40 59 chr9 91451568 91451790 -26410837 + L1M4 LINE L1 2701 2918 -3228 201 340 0 0 chr9 91452093 91452190 -26410437 + A-rich Low_complexity Low_complexity 1 97 0 2270 113 0 0 chr9 91452358 91452659 -26409968 + AluSx SINE Alu 1 301 -11 600 150 142 33 chr9 91452678 91452798 -26409829 + FLAM_C SINE Alu 1 133 0 2193 117 0 10 chr9 91453191 91453490 -26409137 + AluSx SINE Alu 1 296 -16 2271 110 7 0 chr9 91453637 91453936 -26408691 + AluSx SINE Alu 1 301 -11 833 133 51 19 chr9 91453963 91454121 -26408506 + L1MB3 LINE L1 6021 6183 0 308 146 37 49 chr9 91454143 91454225 -26408402 - L1MB7 LINE L1 -2 6182 6102 2819 144 49 0 chr9 91454710 91455155 -26407472 + LTR24 LTR ERV1 1 467 0 1078 160 160 62 chr9 91455201 91455243 -26407384 + AluJo SINE Alu 1 37 -265 1501 150 0 70 chr9 91455243 91455530 -26407097 - AluJb SINE Alu -12 300 34 1078 160 160 62 chr9 91455530 91455762 -26406865 + AluJo SINE Alu 37 302 0 2219 118 3 10 chr9 91455813 91456127 -26406500 + AluSx SINE Alu 1 312 0 482 306 12 19 chr9 91456366 91456526 -26406101 + MIR3 SINE MIR 20 178 -30 802 171 8 0 chr9 91456533 91456662 -26405965 + FRAM SINE Alu 37 166 -10 290 151 0 0 chr9 91456662 91456715 -26405912 + L1MA3 LINE L1 6253 6305 0 2268 110 0 3 chr9 91456759 91457068 -26405559 + AluY SINE Alu 1 308 -3 272 213 0 0 chr9 91457111 91457172 -26405455 - MER5A DNA MER1_type -84 105 45 1298 131 21 34 chr9 91457261 91457498 -26405129 - L1MA2 LINE L1 -1 6303 6070 2126 143 0 0 chr9 91457504 91457805 -26404822 - AluSx SINE Alu -10 302 2 201 147 29 0 chr9 91457878 91457912 -26404715 + GA-rich Low_complexity Low_complexity 2 36 0 1103 83 11 17 chr9 91457913 91458093 -26404534 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 391 254 0 0 chr9 91458398 91458469 -26404158 - MER81 DNA DNA -38 76 6 407 194 122 0 chr9 91458474 91458572 -26404055 - MER5A DNA MER1_type -35 154 45 1692 156 31 24 chr9 91459210 91459499 -26403128 - AluJo SINE Alu -21 291 1 660 168 58 119 chr9 91459702 91459853 -26402774 + MIR SINE MIR 46 180 -82 2190 141 8 25 chr9 91459853 91460214 -26402413 - THE1A LTR MaLR 0 355 1 660 168 58 119 chr9 91460214 91460288 -26402339 + MIR SINE MIR 180 257 -5 710 190 8 0 chr9 91460770 91460891 -26401736 + FLAM_C SINE Alu 1 122 -11 199 271 90 49 chr9 91461145 91461289 -26401338 - L3 LINE CR1 -8 1569 1420 835 74 9 0 chr9 91461383 91461491 -26401136 + HY1 scRNA scRNA 1 109 -3 219 150 0 0 chr9 91461491 91461531 -26401096 + (A)n Simple_repeat Simple_repeat 1 40 0 2337 102 0 0 chr9 91461773 91462067 -26400560 - AluSp SINE Alu -14 299 6 1605 166 77 63 chr9 91462753 91462808 -26399819 + MER89 LTR ERV1 1 54 -505 234 0 0 0 chr9 91462808 91462834 -26399793 + (GA)n Simple_repeat Simple_repeat 2 27 0 2085 106 0 11 chr9 91462835 91463110 -26399517 - AluSx SINE Alu -40 272 1 1605 166 77 63 chr9 91463110 91463501 -26399126 + MER89 LTR ERV1 53 554 -5 2148 114 10 13 chr9 91464011 91464309 -26398318 + AluSx SINE Alu 1 297 -15 24 91 0 0 chr9 91467084 91467150 -26395477 + GC_rich Low_complexity Low_complexity 1 66 0 26 98 0 0 chr9 91467183 91467265 -26395362 + GC_rich Low_complexity Low_complexity 1 82 0 185 282 0 0 chr9 91467885 91467924 -26394703 + T-rich Low_complexity Low_complexity 1 39 0 1323 58 0 11 chr9 91468082 91468256 -26394371 - Tigger3(Golem) DNA MER2_type -235 2794 2623 955 145 53 7 chr9 91468306 91468458 -26394169 - Tigger3(Golem) DNA MER2_type -2838 191 33 193 243 0 0 chr9 91468459 91468496 -26394131 + MIR SINE MIR 198 234 -28 1898 147 7 0 chr9 91468533 91468818 -26393809 + AluSx SINE Alu 1 287 -25 301 92 120 0 chr9 91468819 91468961 -26393666 + (TA)n Simple_repeat Simple_repeat 2 160 0 231 211 0 0 chr9 91469005 91469057 -26393570 - LTR66 LTR ERVL -171 439 388 307 329 68 28 chr9 91469096 91469348 -26393279 + L1M4 LINE L1 4023 4284 -1862 2076 154 0 19 chr9 91470103 91470421 -26392206 - AluSx SINE Alu 0 312 1 2246 99 3 0 chr9 91471044 91471336 -26391291 - AluSx SINE Alu -17 295 3 312 27 0 0 chr9 91471458 91471495 -26391132 + (TG)n Simple_repeat Simple_repeat 2 38 0 2233 113 0 0 chr9 91471510 91471803 -26390824 - AluSx SINE Alu -19 293 1 1451 144 0 5 chr9 91471933 91472141 -26390486 - AluJb SINE Alu -21 291 85 224 213 16 16 chr9 91472624 91472685 -26389942 + MIR SINE MIR 162 222 -40 2270 117 0 0 chr9 91472896 91473195 -26389432 + AluSx SINE Alu 1 299 -13 227 130 0 22 chr9 91473349 91473395 -26389232 + (TA)n Simple_repeat Simple_repeat 1 45 0 377 224 119 102 chr9 91473430 91473575 -26389052 - L1ME4a LINE L1 -114 6007 5866 2154 101 35 3 chr9 91473575 91473862 -26388765 - AluSg SINE Alu -14 296 1 377 224 119 102 chr9 91473862 91474010 -26388617 - L1ME4a LINE L1 -255 5866 5709 240 265 12 12 chr9 91474066 91474149 -26388478 + L1 LINE L1 3370 3452 -2694 249 286 48 18 chr9 91474294 91474462 -26388165 + L1 LINE L1 3593 3765 -2381 2045 112 0 0 chr9 91475249 91475526 -26387101 + AluSx SINE Alu 1 277 -35 672 98 0 0 chr9 91475526 91475628 -26386999 + (TAGA)n Simple_repeat Simple_repeat 4 105 0 664 216 0 15 chr9 91475924 91476058 -26386569 + FLAM_A SINE Alu 1 132 -1 1574 153 56 31 chr9 91476096 91476383 -26386244 - AluJo SINE Alu -18 294 1 283 228 13 25 chr9 91476670 91476749 -26385878 + LTR37B LTR ERV1 6 83 -385 491 222 71 75 chr9 91476891 91477157 -26385470 + LTR37A LTR ERV1 199 463 -5 1702 167 23 36 chr9 91477523 91477828 -26384799 - AluJo SINE Alu -11 301 1 759 128 24 8 chr9 91477828 91477953 -26384674 + L1MB3 LINE L1 6005 6131 -52 1320 120 5 10 chr9 91477953 91478166 -26384461 - AluSq SINE Alu 0 306 95 1680 59 5 0 chr9 91478772 91478976 -26383651 + AluY SINE Alu 97 301 -10 770 146 0 29 chr9 91479512 91479649 -26382978 - FRAM SINE Alu -4 172 40 342 0 0 0 chr9 91480587 91480625 -26382002 + (CA)n Simple_repeat Simple_repeat 1 38 0 618 285 71 77 chr9 91480977 91481135 -26381492 - HAL1 LINE L1 -738 1769 1612 2209 125 0 0 chr9 91481135 91481431 -26381196 - AluSx SINE Alu -11 301 6 618 285 71 77 chr9 91481431 91481806 -26380821 - HAL1 LINE L1 -895 1612 1239 645 207 33 0 chr9 91481816 91481937 -26380690 - FLAM_C SINE Alu -7 126 2 325 266 57 70 chr9 91482164 91482322 -26380305 - HAL1 LINE L1 -1540 967 812 2031 150 64 22 chr9 91482364 91482711 -26379916 + THE1C LTR MaLR 1 365 -10 2239 116 0 0 chr9 91482711 91483013 -26379614 + AluSg SINE Alu 1 302 -8 2031 150 64 22 chr9 91483013 91483025 -26379602 + THE1C LTR MaLR 365 375 0 1978 97 0 34 chr9 91483317 91483616 -26379011 + AluSq SINE Alu 25 314 0 2456 251 63 31 chr9 91483983 91484726 -26377901 - L1ME3 LINE L1 -6 6156 5438 2380 86 7 0 chr9 91484726 91485029 -26377598 - AluSp SINE Alu -8 305 1 2456 251 63 31 chr9 91485029 91485744 -26376883 - L1ME3 LINE L1 -724 5438 4653 968 106 0 0 chr9 91485768 91485900 -26376727 + AluSg/x SINE Alu 177 308 -2 314 336 79 7 chr9 91486029 91486169 -26376458 + L2 LINE L2 3122 3271 -1 2253 113 0 3 chr9 91486426 91486736 -26375891 + AluSq SINE Alu 1 309 -4 342 284 158 68 chr9 91487114 91487628 -26374999 - MLT1K LTR MaLR -18 570 11 2265 121 3 6 chr9 91487686 91487999 -26374628 - AluSx SINE Alu 0 312 1 536 96 14 0 chr9 91488074 91488147 -26374480 - MADE1 DNA Mariner -6 74 1 231 337 83 44 chr9 91488147 91488328 -26374299 - L3 LINE CR1 -400 1177 990 375 60 0 0 chr9 91488781 91488831 -26373796 + (TC)n Simple_repeat Simple_repeat 1 50 0 1606 185 3 20 chr9 91488831 91489133 -26373494 - AluJb SINE Alu -15 297 1 7036 61 13 0 chr9 91489178 91490398 -26372229 - L1PA7 LINE L1 -20 6134 4901 597 96 0 12 chr9 91490400 91490483 -26372144 - L1PA7 LINE L1 -2358 3788 3707 2235 103 0 0 chr9 91490491 91490782 -26371845 + AluSx SINE Alu 1 291 -21 1058 136 0 0 chr9 91490964 91491111 -26371516 + AluSg/x SINE Alu 153 299 -11 1596 156 99 16 chr9 91491112 91491426 -26371201 - THE1C LTR MaLR -35 340 1 832 127 0 90 chr9 91491426 91491592 -26371035 + MER53 DNA DNA 37 187 -2 778 318 59 0 chr9 91491832 91492068 -26370559 - MIR SINE MIR -7 255 6 377 252 46 25 chr9 91492447 91492591 -26370036 + MLT1J2 LTR MaLR 67 209 -200 1750 173 23 7 chr9 91492809 91493116 -26369511 - AluJb SINE Alu 0 312 1 1568 137 4 4 chr9 91493776 91494029 -26368598 + AluSx SINE Alu 50 302 0 1695 149 45 10 chr9 91494772 91495060 -26367567 + AluJb SINE Alu 1 298 -14 2188 118 0 0 chr9 91495060 91495349 -26367278 + AluSx SINE Alu 24 312 0 25 51 0 0 chr9 91495453 91495492 -26367135 + AT_rich Low_complexity Low_complexity 1 39 0 2098 138 0 0 chr9 91496103 91496393 -26366234 + AluJb SINE Alu 6 295 -17 957 244 7 81 chr9 91496617 91496767 -26365860 - MIR SINE MIR 0 262 102 2063 140 51 61 chr9 91496767 91496895 -26365732 + MLT1B LTR MaLR 1 129 -261 2198 115 0 13 chr9 91496895 91497199 -26365428 + AluSx SINE Alu 1 300 -12 2063 140 51 61 chr9 91497199 91497464 -26365163 + MLT1B LTR MaLR 129 390 0 957 244 7 81 chr9 91497464 91497502 -26365125 - MIR SINE MIR -160 102 63 2466 83 0 3 chr9 91497502 91497804 -26364823 - AluSc SINE Alu -8 301 1 957 244 7 81 chr9 91497804 91497897 -26364730 - MIR SINE MIR -199 63 1 1354 166 59 47 chr9 91497917 91498237 -26364390 - MER33 DNA MER1_type 0 324 1 714 269 68 87 chr9 91498320 91498433 -26364194 + L2 LINE L2 2809 2923 -349 2303 107 3 0 chr9 91498433 91498741 -26363886 - AluSx SINE Alu -3 309 1 714 269 68 87 chr9 91498741 91499099 -26363528 + L2 LINE L2 2923 3271 -1 276 298 75 32 chr9 91499448 91499626 -26363001 - L2 LINE L2 -183 3089 2901 2442 83 0 6 chr9 91499626 91499938 -26362689 + AluY SINE Alu 1 310 -1 743 268 89 24 chr9 91500025 91500405 -26362222 + MLT1J LTR MaLR 100 582 -6 403 186 136 25 chr9 91501086 91501114 -26361513 - L1ME4a LINE L1 0 6121 6097 1697 181 3 3 chr9 91501114 91501406 -26361221 + AluJb SINE Alu 1 292 -20 403 186 136 25 chr9 91501406 91501495 -26361132 - L1ME4a LINE L1 -24 6097 5991 793 233 37 11 chr9 91501511 91501700 -26360927 - MLT1L LTR MaLR -4 611 418 393 308 88 22 chr9 91501791 91501973 -26360654 - MLT1L LTR MaLR -400 215 22 2052 138 0 3 chr9 91502158 91502456 -26360171 - AluJb SINE Alu -15 297 1 6000 157 64 11 chr9 91502457 91504064 -26358563 - L1PA16 LINE L1 0 6166 4645 2101 133 3 0 chr9 91504064 91504366 -26358261 - AluSx SINE Alu -9 303 1 6000 157 64 11 chr9 91504366 91504435 -26358192 - L1PA16 LINE L1 -1521 4645 4581 441 0 0 0 chr9 91504435 91504484 -26358143 + (TG)n Simple_repeat Simple_repeat 2 50 0 6000 157 64 11 chr9 91504484 91504924 -26357703 - L1PA16 LINE L1 -1585 4581 3938 1498 144 9 4 chr9 91505077 91505306 -26357321 - MER2 DNA MER2_type 0 345 116 2089 115 0 51 chr9 91505498 91505810 -26356817 + AluSx SINE Alu 1 296 -16 812 185 7 0 chr9 91505906 91506041 -26356586 - MER2 DNA MER2_type -209 136 1 266 194 15 15 chr9 91506512 91506579 -26356048 - L1M4 LINE L1 -3949 3008 2942 1710 195 47 14 chr9 91506583 91506927 -26355700 - MER82 DNA MER2_type -3 650 296 3962 251 73 13 chr9 91506946 91508383 -26354244 - L1M4 LINE L1 -4652 2307 957 1635 186 121 61 chr9 91508383 91508470 -26354157 - MER31B LTR ERV1 0 466 386 2258 106 3 19 chr9 91508470 91508781 -26353846 + AluSx SINE Alu 1 306 -6 1635 186 121 61 chr9 91508781 91509086 -26353541 - MER31B LTR ERV1 -80 386 43 2299 89 3 13 chr9 91509086 91509389 -26353238 + AluY SINE Alu 1 300 -11 1635 186 121 61 chr9 91509389 91509435 -26353192 - MER31B LTR ERV1 -423 43 1 3962 251 73 13 chr9 91509435 91509585 -26353042 - L1M4 LINE L1 -6002 957 426 1991 149 40 37 chr9 91509685 91510061 -26352566 + MLT2B3 LTR ERVL 178 554 0 1867 163 22 45 chr9 91510061 91510418 -26352209 + MLT1B LTR MaLR 42 390 0 2220 107 7 7 chr9 91511119 91511418 -26351209 - AluSx SINE Alu -13 299 1 1976 127 3 27 chr9 91512191 91512483 -26350144 + AluSx SINE Alu 1 285 -27 486 182 242 0 chr9 91512532 91512631 -26349996 + FLAM_C SINE Alu 2 124 -19 989 209 76 4 chr9 91512903 91513166 -26349461 + L1MC5 LINE L1 7026 7307 -654 351 158 232 0 chr9 91513267 91513349 -26349278 + L1MC5 LINE L1 7452 7552 -409 290 133 67 17 chr9 91513351 91513411 -26349216 + L1MC5 LINE L1 7723 7785 -176 877 138 92 0 chr9 91513411 91513563 -26349064 + AluSg/x SINE Alu 133 298 -11 280 191 229 9 chr9 91513566 91513671 -26348956 + L1MC5 LINE L1 7772 7899 -62 2218 106 7 3 chr9 91513688 91513981 -26348646 + AluSx SINE Alu 1 294 -18 1635 175 14 7 chr9 91514064 91514355 -26348272 + AluJb SINE Alu 1 293 -19 440 240 109 14 chr9 91514744 91514964 -26347663 - L1ME3A LINE L1 -121 6049 5779 325 228 132 9 chr9 91514934 91515048 -26347579 - L1M4 LINE L1 -3705 2441 2314 * 1225 179 119 35 chr9 91515256 91515541 -26347086 + AluJo SINE Alu 1 309 -3 189 224 118 53 chr9 91516212 91516288 -26346339 + L2 LINE L2 3191 3271 -1 1988 174 34 21 chr9 91516292 91516677 -26345950 + MLT1B LTR MaLR 1 390 0 593 101 0 34 chr9 91519713 91519802 -26342825 + AluJ/FLAM SINE Alu 1 86 -226 195 42 0 0 chr9 91519806 91519830 -26342797 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 237 83 0 0 chr9 91520696 91520732 -26341895 + (CA)n Simple_repeat Simple_repeat 2 37 0 935 124 5 124 chr9 91521338 91521531 -26341096 - FAM SINE Alu -5 170 1 1975 248 91 16 chr9 91524063 91524567 -26338060 + MLT1F LTR MaLR 1 542 0 358 250 68 145 chr9 91524629 91524806 -26337821 + MIR SINE MIR 1 155 -107 1101 176 0 41 chr9 91524806 91525027 -26337600 + L1MB3 LINE L1 5965 6176 -7 358 250 68 145 chr9 91525027 91525097 -26337530 + MIR SINE MIR 155 229 -33 1597 158 54 7 chr9 91525204 91525482 -26337145 + AluJb SINE Alu 1 291 -21 24 0 0 0 chr9 91525482 91525506 -26337121 + AT_rich Low_complexity Low_complexity 1 24 0 1252 202 73 0 chr9 91526018 91526299 -26336328 - MER58B DNA MER1_type 0 341 36 207 261 0 0 chr9 91527300 91527346 -26335281 + L2 LINE L2 3219 3264 -8 22 0 0 0 chr9 91527778 91527800 -26334827 + AT_rich Low_complexity Low_complexity 1 22 0 529 312 65 50 chr9 91528034 91528431 -26334196 + L2 LINE L2 2260 2662 -652 339 296 20 26 chr9 91528431 91528583 -26334044 + Charlie7 DNA MER1_type 2 152 -2460 2247 113 0 3 chr9 91528711 91529011 -26333616 + AluSx SINE Alu 1 299 -13 764 137 86 8 chr9 91529173 91529290 -26333337 - FLAM_C SINE Alu -16 127 2 248 254 116 14 chr9 91529294 91529432 -26333195 + Charlie7 DNA MER1_type 1758 1909 -703 640 191 42 30 chr9 91529432 91529600 -26333027 + L1MB8 LINE L1 6009 6178 0 957 170 13 0 chr9 91529605 91529758 -26332869 + FRAM SINE Alu 1 151 -25 981 242 144 12 chr9 91529762 91530242 -26332385 + Charlie7 DNA MER1_type 1914 2456 -156 277 296 64 57 chr9 91530267 91530531 -26332096 + L2 LINE L2 2698 2963 -351 312 281 37 0 chr9 91530674 91530756 -26331871 + L2 LINE L2 3228 3312 -1 1479 191 18 21 chr9 91531051 91531333 -26331294 + AluJo SINE Alu 1 281 -31 993 43 35 0 chr9 91531333 91531474 -26331153 + (GAGAA)n Simple_repeat Simple_repeat 3 148 0 23 0 0 0 chr9 91532444 91532467 -26330160 + AT_rich Low_complexity Low_complexity 1 23 0 396 0 0 0 chr9 91532702 91532746 -26329881 + (TG)n Simple_repeat Simple_repeat 2 45 0 26 0 0 0 chr9 91532810 91532836 -26329791 + AT_rich Low_complexity Low_complexity 1 26 0 1976 156 3 3 chr9 91533079 91533380 -26329247 + AluSx SINE Alu 1 301 -11 34 55 0 0 chr9 91535549 91535604 -26327023 + AT_rich Low_complexity Low_complexity 1 55 0 292 290 130 0 chr9 91535741 91535841 -26326786 - L2 LINE L2 -4 3309 3197 306 267 17 69 chr9 91536865 91536981 -26325646 + L1MC/D LINE L1 5667 5776 -2032 433 295 119 40 chr9 91537287 91538407 -26324220 + L1MEd LINE L1 448 1698 -4612 215 291 30 108 chr9 91538674 91538877 -26323750 - L2 LINE L2 -12 3301 3115 1595 183 4 7 chr9 91538877 91539151 -26323476 + AluJo SINE Alu 1 273 -39 246 332 144 26 chr9 91540410 91540723 -26321904 - L2 LINE L2 -638 2676 2327 2141 114 10 13 chr9 91541074 91541372 -26321255 - AluSx SINE Alu -15 297 1 1370 166 81 65 chr9 91541882 91542272 -26320355 - MER89 LTR ERV1 -5 554 172 2054 106 0 11 chr9 91542272 91542547 -26320080 + AluSx SINE Alu 1 272 -40 234 0 0 0 chr9 91542548 91542574 -26320053 + (TC)n Simple_repeat Simple_repeat 2 27 0 1370 166 81 65 chr9 91542574 91542629 -26319998 - MER89 LTR ERV1 -386 173 1 2318 112 3 0 chr9 91543309 91543614 -26319013 + AluSp SINE Alu 1 306 -7 1093 231 72 172 chr9 91543978 91544386 -26318241 + L2 LINE L2 2160 2607 -706 502 186 51 68 chr9 91544386 91544504 -26318123 + FLAM_A SINE Alu 10 125 -17 1093 231 72 172 chr9 91544504 91544620 -26318007 + L2 LINE L2 2607 2733 -580 1833 163 0 3 chr9 91544620 91544903 -26317724 - AluJb SINE Alu -30 282 1 1093 231 72 172 chr9 91544903 91545315 -26317312 + L2 LINE L2 2733 3108 -205 1641 154 60 4 chr9 91545593 91545859 -26316768 - AluSx SINE Alu -31 281 1 659 260 134 31 chr9 91545861 91546084 -26316543 - MIR SINE MIR -15 247 2 303 318 72 50 chr9 91546103 91546380 -26316247 - L2 LINE L2 -214 3099 2817 247 333 108 8 chr9 91547016 91547136 -26315491 + MIR3 SINE MIR 59 190 -18 1026 202 19 83 chr9 91548624 91548936 -26313691 + L1MC4 LINE L1 6785 7076 -966 1628 255 118 3 chr9 91548940 91549525 -26313102 + L1MC4 LINE L1 7246 7897 -145 601 356 42 8 chr9 91549828 91550089 -26312538 - L2 LINE L2 -337 2977 2708 210 197 45 15 chr9 91550104 91550170 -26312457 + (TA)n Simple_repeat Simple_repeat 1 68 0 3303 120 68 78 chr9 91550208 91550943 -26311684 + Tigger3b DNA MER2_type 27 754 -477 2192 124 3 0 chr9 91550949 91551256 -26311371 - AluSx SINE Alu -2 310 3 230 122 0 0 chr9 91551256 91551297 -26311330 + Tigger3b DNA MER2_type 734 774 -457 1332 128 244 0 chr9 91551297 91551571 -26311056 + Tigger3b DNA MER2_type 892 1232 0 1073 256 103 11 chr9 91551585 91551945 -26310682 - L1ME1 LINE L1 -88 6078 5686 23 0 0 0 chr9 91551971 91551994 -26310633 + AT_rich Low_complexity Low_complexity 1 23 0 710 229 57 13 chr9 91551994 91552151 -26310476 - FAM SINE Alu -11 164 1 1135 232 29 32 chr9 91552272 91552395 -26310232 - L1ME1 LINE L1 -1004 5142 5020 1997 153 0 3 chr9 91552395 91552695 -26309932 - 7SLRNA srpRNA srpRNA -11 309 11 1135 232 29 32 chr9 91552695 91552980 -26309647 - L1ME1 LINE L1 -1126 5020 4735 2073 135 0 3 chr9 91553114 91553411 -26309216 + AluSx SINE Alu 1 296 -16 262 319 42 6 chr9 91553419 91553585 -26309042 + L1ME3 LINE L1 4176 4347 -1799 611 326 43 0 chr9 91553631 91553818 -26308809 - MIR SINE MIR -32 230 36 2059 111 38 0 chr9 91553875 91554163 -26308464 + AluY SINE Alu 1 299 -12 709 224 33 63 chr9 91554166 91554248 -26308379 + L1ME3 LINE L1 4413 4496 -1650 1589 186 19 36 chr9 91554248 91554555 -26308072 + AluJb SINE Alu 3 304 -8 709 224 33 63 chr9 91554555 91554775 -26307852 + L1ME3 LINE L1 4496 4706 -1440 2007 130 13 7 chr9 91554882 91555183 -26307444 + AluSx SINE Alu 1 303 -9 2339 221 139 68 chr9 91555201 91555782 -26306845 + L1MC4 LINE L1 6415 6953 -1089 334 173 0 0 chr9 91555782 91555834 -26306793 - Alu SINE Alu -250 52 1 2224 119 0 0 chr9 91555844 91556138 -26306489 - AluSx SINE Alu -18 294 1 2339 221 139 68 chr9 91556138 91556268 -26306359 + L1MC4 LINE L1 6961 7080 -962 2468 74 3 0 chr9 91556268 91556578 -26306049 + AluY SINE Alu 1 311 0 2339 221 139 68 chr9 91556578 91556878 -26305749 + L1MC4 LINE L1 7080 7565 -477 730 189 0 35 chr9 91556883 91557026 -26305601 + AluJo SINE Alu 82 219 -93 586 172 0 0 chr9 91557030 91557169 -26305458 + AluJb SINE Alu 192 330 0 302 265 66 0 chr9 91557174 91557310 -26305317 + L1MC4 LINE L1 7572 7716 -326 1301 175 19 52 chr9 91557310 91557578 -26305049 + AluJo SINE Alu 34 292 -20 647 206 56 22 chr9 91557578 91557758 -26304869 + L1MC4 LINE L1 7733 7918 -124 348 205 0 115 chr9 91557791 91557913 -26304714 + L1MC4 LINE L1 7902 8009 -33 438 229 118 26 chr9 91557973 91558244 -26304383 + L1ME3 LINE L1 5047 5342 -804 * 809 73 0 0 chr9 91558243 91558352 -26304275 + L1PB1 LINE L1 6000 6108 -43 778 263 125 40 chr9 91558365 91558906 -26303721 + L1ME3 LINE L1 5352 5941 -229 257 244 5 51 chr9 91559037 91559165 -26303462 + L1ME3 LINE L1 5971 6088 -74 395 241 143 0 chr9 91559252 91559385 -26303242 - L2 LINE L2 -1215 2099 1948 25 0 0 0 chr9 91559869 91559894 -26302733 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr9 91560616 91560637 -26301990 + AT_rich Low_complexity Low_complexity 1 21 0 245 324 89 27 chr9 91561058 91561283 -26301344 + MIR SINE MIR 21 259 -3 205 311 14 0 chr9 91562035 91562109 -26300518 + L3 LINE CR1 931 1005 -572 708 78 0 0 chr9 91562113 91562203 -26300424 + 5S rRNA rRNA 1 90 -31 297 267 206 14 chr9 91562238 91562384 -26300243 + L3 LINE CR1 1051 1224 -353 240 148 148 0 chr9 91562389 91562443 -26300184 + L1MB4 LINE L1 6113 6174 -6 336 210 188 74 chr9 91563063 91563292 -26299335 - L2 LINE L2 -62 3251 2997 1940 130 61 28 chr9 91563433 91563794 -26298833 + THE1C LTR MaLR 1 373 -2 1436 147 50 29 chr9 91563903 91564141 -26298486 - AluJb SINE Alu -69 243 1 4271 169 50 16 chr9 91564232 91565247 -26297380 + L1MB3 LINE L1 5107 6172 -11 330 304 122 6 chr9 91565375 91565556 -26297071 + L2 LINE L2 2652 2853 -461 2356 100 0 0 chr9 91565827 91566128 -26296499 + AluSq SINE Alu 1 301 -12 327 65 0 0 chr9 91566128 91566174 -26296453 + (TA)n Simple_repeat Simple_repeat 2 47 0 297 306 107 8 chr9 91566190 91566311 -26296316 + L2 LINE L2 3149 3281 -32 1602 200 28 0 chr9 91566388 91566678 -26295949 - AluJo SINE Alu -14 298 1 2371 101 0 0 chr9 91567513 91567819 -26294808 + AluSq SINE Alu 1 306 -7 1093 231 72 172 chr9 91568183 91568591 -26294036 + L2 LINE L2 2160 2607 -706 502 186 51 68 chr9 91568591 91568709 -26293918 + FLAM_A SINE Alu 10 125 -17 1093 231 72 172 chr9 91568709 91568825 -26293802 + L2 LINE L2 2607 2733 -580 1833 163 0 3 chr9 91568825 91569108 -26293519 - AluJb SINE Alu -30 282 1 1093 231 72 172 chr9 91569108 91569520 -26293107 + L2 LINE L2 2733 3108 -205 1641 154 60 4 chr9 91569798 91570064 -26292563 - AluSx SINE Alu -31 281 1 659 260 134 31 chr9 91570066 91570289 -26292338 - MIR SINE MIR -15 247 2 303 318 72 50 chr9 91570308 91570585 -26292042 - L2 LINE L2 -214 3099 2817 247 333 108 8 chr9 91571221 91571341 -26291286 + MIR3 SINE MIR 59 190 -18 1026 202 19 83 chr9 91572829 91573141 -26289486 + L1MC4 LINE L1 6785 7076 -966 1628 255 118 3 chr9 91573145 91573730 -26288897 + L1MC4 LINE L1 7246 7897 -145 380 270 101 68 chr9 91574746 91575042 -26287585 + L1MC/D LINE L1 4402 4707 -1439 1906 124 6 60 chr9 91575076 91575407 -26287220 + AluSq SINE Alu 1 313 0 307 294 95 24 chr9 91575616 91575827 -26286800 + L1MC/D LINE L1 4850 5075 -1071 1236 171 0 12 chr9 91575909 91576149 -26286478 + L1MB3 LINE L1 5945 6181 -2 341 333 107 35 chr9 91576236 91576497 -26286130 + L1MC/D LINE L1 5524 5803 -2005 2021 79 8 8 chr9 91577020 91577285 -26285342 - AluY SINE Alu -9 302 38 204 323 86 0 chr9 91577558 91577651 -26284976 + MIR3 SINE MIR 98 198 -10 1557 170 3 62 chr9 91578267 91578591 -26284036 + AluJo SINE Alu 1 305 -7 2309 105 0 3 chr9 91578770 91579075 -26283552 + AluSx SINE Alu 1 304 -8 339 274 68 8 chr9 91579417 91579534 -26283093 + MIR3 SINE MIR 78 201 -7 311 87 0 0 chr9 91579639 91579685 -26282942 + U5 snRNA snRNA 1 46 -70 1776 144 18 7 chr9 91579802 91580080 -26282547 - AluSx SINE Alu -13 299 19 2132 111 0 29 chr9 91580668 91580983 -26281644 - AluSx SINE Alu -6 306 1 1177 154 72 9 chr9 91581060 91581281 -26281346 - MER46A DNA MER2_type 0 236 2 1822 160 0 49 chr9 91581298 91581623 -26281004 + AluSx SINE Alu 4 312 0 1768 171 30 7 chr9 91581923 91582221 -26280406 - AluJb SINE Alu -7 305 1 264 59 0 0 chr9 91582400 91582434 -26280193 + (TCCA)n Simple_repeat Simple_repeat 4 37 0 1417 148 97 4 chr9 91582434 91582663 -26279964 - 7SLRNA srpRNA srpRNA -11 309 56 193 240 37 53 chr9 91584019 91584095 -26278532 + MIR SINE MIR 94 169 -39 1355 218 150 5 chr9 91584554 91584981 -26277646 + LTR54B LTR ERV1 8 496 -2 2263 93 7 0 chr9 91584990 91585291 -26277336 - AluSq SINE Alu -10 303 1 202 125 42 21 chr9 91585418 91585466 -26277161 + A-rich Low_complexity Low_complexity 5 53 0 277 257 64 0 chr9 91585567 91585676 -26276951 - L1ME4a LINE L1 -7 6114 5999 622 208 39 0 chr9 91586461 91586591 -26276036 + MER5A DNA MER1_type 55 189 0 1596 147 36 14 chr9 91587431 91587560 -26275067 + AluSx SINE Alu 1 126 -186 183 42 0 0 chr9 91587560 91587584 -26275043 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1596 147 36 14 chr9 91587584 91587733 -26274894 + AluSx SINE Alu 126 285 -27 894 19 0 0 chr9 91587733 91587837 -26274790 + (CATAA)n Simple_repeat Simple_repeat 2 105 0 291 291 135 28 chr9 91588597 91588738 -26273889 + MIR SINE MIR 92 247 -15 21 0 0 0 chr9 91589068 91589089 -26273538 + AT_rich Low_complexity Low_complexity 1 21 0 503 185 114 71 chr9 91589342 91589526 -26273101 - L1ME1 LINE L1 -5 6161 5970 1314 232 135 48 chr9 91589578 91589913 -26272714 - L1MEc LINE L1 -1576 4639 4334 2035 102 18 0 chr9 91589913 91590209 -26272418 - AluSx SINE Alu 0 303 3 1314 232 135 48 chr9 91590209 91590518 -26272109 - L1MEc LINE L1 -1881 4334 3938 279 54 0 0 chr9 91590605 91590642 -26271985 + (TG)n Simple_repeat Simple_repeat 1 37 0 751 163 16 8 chr9 91590883 91591006 -26271621 + FLAM_A SINE Alu 1 124 -9 3059 255 90 39 chr9 91591322 91591705 -26270922 - L1MEc LINE L1 -2381 3834 3472 1042 172 105 86 chr9 91591705 91592066 -26270561 - MLT1A2 LTR MaLR -3 371 4 3059 255 90 39 chr9 91592066 91592661 -26269966 - L1MEc LINE L1 -2743 3472 2909 2104 136 38 16 chr9 91592661 91593028 -26269599 + THE1C LTR MaLR 1 375 0 9394 124 38 35 chr9 91593028 91594270 -26268357 + THE1C-int LTR MaLR 1 1251 -329 1904 183 0 0 chr9 91594270 91594582 -26268045 + AluSx SINE Alu 1 312 0 9394 124 38 35 chr9 91594582 91594914 -26267713 + THE1C-int LTR MaLR 1251 1580 0 1646 185 38 19 chr9 91594914 91595282 -26267345 + THE1C LTR MaLR 1 375 0 3059 255 90 39 chr9 91595282 91595389 -26267238 - L1MEc LINE L1 -3306 2909 2809 1074 249 73 0 chr9 91595389 91595706 -26266921 - MER58B DNA MER1_type -1 340 1 3059 255 90 39 chr9 91595706 91597191 -26265436 - L1MEc LINE L1 -3406 2809 1117 2388 92 0 3 chr9 91597191 91597497 -26265130 - AluSx SINE Alu -7 305 1 3059 255 90 39 chr9 91597497 91597980 -26264647 - L1MEc LINE L1 -5098 1117 660 369 344 127 5 chr9 91598358 91598570 -26264057 - L1MEc LINE L1 -6030 366 129 257 196 0 0 chr9 91598578 91598624 -26264003 - L1MEc LINE L1 -6316 80 35 621 264 94 30 chr9 91598913 91599148 -26263479 + MLT1J LTR MaLR 2 251 -260 1474 174 0 4 chr9 91599446 91599687 -26262940 + AluJo SINE Alu 1 240 -72 1105 265 84 10 chr9 91599965 91600340 -26262287 + L1ME3A LINE L1 5087 5433 -737 2119 132 10 0 chr9 91600340 91600635 -26261992 + AluSx SINE Alu 1 298 -14 189 0 0 0 chr9 91600635 91600656 -26261971 + (TA)n Simple_repeat Simple_repeat 2 22 0 279 0 0 0 chr9 91600655 91600686 -26261941 + (CA)n Simple_repeat Simple_repeat 2 32 0 1105 265 84 10 chr9 91600656 91600882 -26261745 + L1ME3A LINE L1 5432 5703 -467 2238 102 0 20 chr9 91600887 91601192 -26261435 + AluSq SINE Alu 1 299 -14 3189 203 33 9 chr9 91601196 91601993 -26260634 + L1MB2 LINE L1 4515 5330 -816 3927 155 59 22 chr9 91602051 91602868 -26259759 + L1MB2 LINE L1 5317 6163 -8 888 226 31 38 chr9 91602968 91603260 -26259367 + L1ME3A LINE L1 5789 6078 -92 410 168 84 109 chr9 91603413 91603608 -26259019 + MLT1J LTR MaLR 20 168 -278 245 296 93 23 chr9 91603720 91603892 -26258735 + MLT1J LTR MaLR 263 446 -65 366 290 96 28 chr9 91603937 91604178 -26258449 + L1ME3A LINE L1 3754 3977 -2169 1840 165 3 19 chr9 91604178 91604487 -26258140 + AluJb SINE Alu 1 304 -8 366 290 96 28 chr9 91604487 91604858 -26257769 + L1ME3A LINE L1 3977 4408 -1738 447 309 127 42 chr9 91604858 91604918 -26257709 - MLT1J LTR MaLR -13 498 445 2061 109 3 7 chr9 91604918 91605212 -26257415 + AluSx SINE Alu 14 306 -6 447 309 127 42 chr9 91605212 91605608 -26257019 - MLT1J LTR MaLR -66 445 3 1416 120 60 0 chr9 91605867 91606084 -26256543 - MER30 DNA MER1_type 0 230 1 484 300 145 52 chr9 91606522 91606942 -26255685 + L2 LINE L2 2167 2625 -689 21 0 0 0 chr9 91606952 91606973 -26255654 + AT_rich Low_complexity Low_complexity 1 21 0 2192 97 3 7 chr9 91607153 91607453 -26255174 - AluSx SINE Alu -13 299 1 23 0 0 0 chr9 91607751 91607774 -26254853 + AT_rich Low_complexity Low_complexity 1 23 0 369 279 29 12 chr9 91609277 91609449 -26253178 + L1ME3A LINE L1 5103 5277 -869 270 296 133 44 chr9 91609687 91609913 -26252714 + MLT1I LTR MaLR 104 349 -60 1223 209 105 34 chr9 91609964 91610418 -26252209 + L1ME3A LINE L1 5396 5894 -276 2469 54 0 0 chr9 91610418 91610714 -26251913 + AluY SINE Alu 1 296 -15 1223 209 105 34 chr9 91610714 91610764 -26251863 + L1ME3A LINE L1 5894 5939 -231 803 129 8 15 chr9 91610764 91610896 -26251731 + FLAM_C SINE Alu 3 133 0 198 0 0 0 chr9 91610936 91610958 -26251669 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 1064 177 110 50 chr9 91610959 91611401 -26251226 + L1MD2 LINE L1 5141 5594 -572 995 170 39 175 chr9 91611443 91611855 -26250772 + L1MD2 LINE L1 5887 6242 0 2215 124 0 3 chr9 91612530 91612837 -26249790 - AluSx SINE Alu -6 306 1 2219 103 0 0 chr9 91613531 91613813 -26248814 + AluSg SINE Alu 1 282 -28 2238 124 0 0 chr9 91613832 91614130 -26248497 + AluSx SINE Alu 1 298 -14 949 210 11 0 chr9 91614517 91614698 -26247929 - AluJb SINE Alu -15 297 115 1292 218 97 104 chr9 91615129 91615606 -26247021 + MER77 LTR ERV1 53 527 -78 2398 78 0 0 chr9 91615606 91615915 -26246712 + AluY SINE Alu 1 309 -2 1292 218 97 104 chr9 91615915 91615993 -26246634 + MER77 LTR ERV1 527 604 -1 22 35 0 0 chr9 91616074 91616103 -26246524 + AT_rich Low_complexity Low_complexity 1 29 0 1969 133 20 17 chr9 91616111 91616405 -26246222 - AluJb SINE Alu -15 297 3 31 26 0 0 chr9 91616516 91616554 -26246073 + AT_rich Low_complexity Low_complexity 1 38 0 1982 95 4 0 chr9 91616554 91616833 -26245794 - AluSx SINE Alu 0 310 31 1976 138 7 3 chr9 91617119 91617423 -26245204 + AluJo SINE Alu 2 306 -6 1235 118 39 0 chr9 91617789 91617992 -26244635 - MER30 DNA MER1_type 0 230 20 1524 170 94 4 chr9 91618009 91618274 -26244353 - AluJo SINE Alu -23 289 1 279 0 0 0 chr9 91618299 91618330 -26244297 + (A)n Simple_repeat Simple_repeat 1 31 0 2268 96 0 10 chr9 91619451 91619753 -26242874 + AluSx SINE Alu 1 299 -13 987 257 147 38 chr9 91620449 91621143 -26241484 - L2 LINE L2 0 3313 2551 1153 132 92 4 chr9 91621167 91621393 -26241234 - MER2 DNA MER2_type -3 342 97 603 177 154 80 chr9 91621393 91621568 -26241059 - MER8 DNA MER2_type 0 239 52 1317 172 19 80 chr9 91621615 91621929 -26240698 + AluJo SINE Alu 1 295 -17 313 212 24 0 chr9 91621972 91622057 -26240570 + L1MC4 LINE L1 7766 7852 -190 506 167 39 10 chr9 91622071 91622173 -26240454 + L1MC4 LINE L1 7269 7373 -669 988 195 62 5 chr9 91622189 91622270 -26240357 + AluJo SINE Alu 41 116 -196 192 77 0 0 chr9 91622270 91622296 -26240331 + (CAA)n Simple_repeat Simple_repeat 2 27 0 988 195 62 5 chr9 91622296 91622409 -26240218 + AluJo SINE Alu 116 246 -66 183 42 0 0 chr9 91622425 91622449 -26240178 + (T)n Simple_repeat Simple_repeat 1 24 0 307 157 114 0 chr9 91622566 91622636 -26239991 + L1MC4 LINE L1 7964 8041 -1 21 0 0 0 chr9 91622636 91622657 -26239970 + AT_rich Low_complexity Low_complexity 1 21 0 1945 170 7 0 chr9 91622710 91623016 -26239611 + AluJb SINE Alu 1 308 -4 821 209 6 18 chr9 91623158 91623321 -26239306 - AluJb SINE Alu -19 293 133 619 248 242 10 chr9 91623376 91623682 -26238945 - MLT1F LTR MaLR 0 542 166 246 233 68 0 chr9 91623815 91623888 -26238739 - MER2 DNA MER2_type 0 345 268 755 186 17 40 chr9 91623978 91624155 -26238472 - MER2 DNA MER2_type -172 173 1 1433 222 50 82 chr9 91624155 91624363 -26238264 + L1M4 LINE L1 2294 2507 -3639 1120 216 153 0 chr9 91624363 91624618 -26238009 + AluJo SINE Alu 2 295 -7 1433 222 50 82 chr9 91624618 91624781 -26237846 + L1M4 LINE L1 2507 2674 -3472 2516 57 0 0 chr9 91624781 91625079 -26237548 - AluY SINE Alu -13 298 1 1433 222 50 82 chr9 91625079 91625427 -26237200 + L1M4 LINE L1 2674 2991 -3155 870 110 28 48 chr9 91625436 91625581 -26237046 + FRAM SINE Alu 35 176 0 1117 160 246 25 chr9 91626078 91626322 -26236305 + AluJo SINE Alu 1 298 -14 1861 149 7 17 chr9 91626654 91626950 -26235677 + AluSx SINE Alu 1 293 -19 381 250 220 0 chr9 91627146 91627278 -26235349 + MIR SINE MIR 88 248 -14 1936 127 7 29 chr9 91627370 91627677 -26234950 - AluJb SINE Alu -12 300 1 462 33 0 0 chr9 91628341 91628402 -26234225 + AluSp/q SINE Alu 245 305 -8 252 0 0 0 chr9 91628452 91628480 -26234147 + (TG)n Simple_repeat Simple_repeat 1 28 0 343 288 8 24 chr9 91628868 91628993 -26233634 + MLT1J LTR MaLR 93 215 -296 1423 126 0 5 chr9 91628998 91629196 -26233431 + AluSx SINE Alu 1 197 -115 606 167 7 28 chr9 91629204 91629348 -26233279 + GA-rich Low_complexity Low_complexity 4 144 0 1661 162 37 3 chr9 91629364 91629661 -26232966 + AluJo SINE Alu 5 311 -1 453 229 89 56 chr9 91629669 91629883 -26232744 + MLT1J LTR MaLR 290 510 -1 2192 107 17 0 chr9 91631126 91631424 -26231203 - AluSx SINE Alu -9 303 1 2034 195 94 54 chr9 91631513 91632287 -26230340 - L1MCa LINE L1 -4656 2089 1076 1683 181 137 28 chr9 91632291 91632534 -26230093 - LTR45B LTR ERV1 0 489 274 1567 193 0 17 chr9 91632534 91632824 -26229803 - AluJo SINE Alu -24 288 4 1683 181 137 28 chr9 91632824 91633017 -26229610 - LTR45B LTR ERV1 -215 274 5 1023 184 24 5 chr9 91633022 91633234 -26229393 - L1MCa LINE L1 -4974 1071 856 782 201 56 33 chr9 91633265 91633479 -26229148 - L1MCa LINE L1 -5305 740 522 1090 115 22 6 chr9 91633579 91633761 -26228866 - L1MC1 LINE L1 -335 5998 5814 240 29 0 0 chr9 91633761 91633800 -26228827 - Alu SINE Alu 0 306 268 1512 160 102 0 chr9 91633955 91634211 -26228416 + AluJo SINE Alu 1 282 -30 900 204 33 0 chr9 91634234 91634415 -26228212 - Tigger1 DNA MER2_type -2230 188 2 1930 133 39 39 chr9 91634417 91634733 -26227894 - L1MA7 LINE L1 -186 6105 5787 273 89 0 0 chr9 91634733 91634778 -26227849 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 1930 133 39 39 chr9 91634778 91634822 -26227805 - L1MA7 LINE L1 -503 5788 5745 2474 114 19 32 chr9 91634822 91635191 -26227436 + THE1B LTR MaLR 1 364 0 7116 115 149 10 chr9 91635191 91635588 -26227039 + THE1B-int LTR MaLR 1 341 -1239 2083 119 25 0 chr9 91635588 91635873 -26226754 + AluSg SINE Alu 1 292 -18 7116 115 149 10 chr9 91635873 91636605 -26226022 + THE1B-int LTR MaLR 341 1287 -293 382 252 145 6 chr9 91636600 91636759 -26225868 - L1M4c LINE L1 -4179 2671 2491 * 1894 227 28 77 chr9 91636799 91637001 -26225626 - L1M4c LINE L1 -4158 2691 2481 212 75 0 25 chr9 91637001 91637041 -26225586 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1894 227 28 77 chr9 91637041 91637555 -26225072 - L1M4c LINE L1 -4368 2481 2072 1135 152 0 27 chr9 91637557 91637741 -26224886 - AluSg/x SINE Alu 0 310 132 2260 126 0 0 chr9 91637741 91638050 -26224577 - AluSx SINE Alu -3 309 1 252 379 7 7 chr9 91638188 91638328 -26224299 - MER110-int LTR ERV1 -2085 2562 2423 7264 118 26 2 chr9 91638329 91639354 -26223273 + THE1B-int LTR MaLR 531 1580 0 2516 125 11 24 chr9 91639354 91639723 -26222904 + THE1B LTR MaLR 1 364 0 345 158 0 35 chr9 91639723 91639780 -26222847 - L1M3e LINE L1 -6975 55 1 2866 203 27 24 chr9 91639791 91639838 -26222789 - L1M4 LINE L1 -1381 4765 4720 1842 163 7 10 chr9 91639838 91640133 -26222494 + AluJb SINE Alu 1 294 -18 2866 203 27 24 chr9 91640133 91640784 -26221843 - L1M4 LINE L1 -1426 4720 4065 207 0 0 0 chr9 91641225 91641248 -26221379 + (T)n Simple_repeat Simple_repeat 1 23 0 1123 156 24 54 chr9 91641318 91641523 -26221104 - AluJb SINE Alu -18 294 96 1733 156 17 36 chr9 91641653 91641955 -26220672 - AluJo SINE Alu -14 298 3 2552 152 19 29 chr9 91641984 91642466 -26220161 - L1MB5 LINE L1 -11 6163 5687 1580 108 36 114 chr9 91642484 91642818 -26219809 - AluYb8 SINE Alu -10 308 1 861 263 173 57 chr9 91642834 91643325 -26219302 - MLT1E LTR MaLR -43 550 3 290 226 54 0 chr9 91643466 91643559 -26219068 - L1M4 LINE L1 -3113 3033 2936 404 216 85 74 chr9 91643665 91643841 -26218786 - L1 LINE L1 -2512 3634 3457 1476 144 82 0 chr9 91643957 91644213 -26218414 + L1MC3 LINE L1 7342 7618 -167 2155 108 47 0 chr9 91644232 91644529 -26218098 + AluSx SINE Alu 1 311 -1 327 175 288 0 chr9 91644533 91644613 -26218014 + MLT1F1 LTR MaLR 412 514 -53 621 200 80 7 chr9 91644794 91644944 -26217683 + L1MC3 LINE L1 7624 7784 -1 2006 66 8 8 chr9 91644974 91645233 -26217394 - L1PB1 LINE L1 -38 6113 5855 2147 206 74 34 chr9 91645301 91645424 -26217203 - MER21B LTR ERV1 -28 835 718 2344 99 0 16 chr9 91645424 91645738 -26216889 - AluSx SINE Alu -1 311 3 2147 206 74 34 chr9 91645738 91646139 -26216488 - MER21B LTR ERV1 -145 718 290 465 226 32 0 chr9 91646254 91646347 -26216280 - MER21B LTR ERV1 -767 96 1 239 263 0 0 chr9 91646347 91646404 -26216223 + L1MEd LINE L1 92 148 -5971 391 189 11 21 chr9 91646408 91646503 -26216124 + MER20 DNA MER1_type 7 100 -119 3585 153 69 12 chr9 91646507 91647160 -26215467 - MER50 LTR ERV1 -44 690 1 472 156 59 148 chr9 91647161 91647296 -26215331 + MER20 DNA MER1_type 96 218 -1 223 231 19 0 chr9 91647580 91647632 -26214995 + (TA)n Simple_repeat Simple_repeat 1 53 0 816 224 10 10 chr9 91647678 91647870 -26214757 + AluJo SINE Alu 6 197 -115 1951 253 32 28 chr9 91647972 91648589 -26214038 + L1M4 LINE L1 3981 4600 -1546 833 121 0 26 chr9 91648652 91648768 -26213859 + AluJb SINE Alu 14 126 -186 453 76 0 0 chr9 91648782 91648848 -26213779 + (GA)n Simple_repeat Simple_repeat 2 67 0 845 161 0 0 chr9 91648913 91649043 -26213584 + FLAM_C SINE Alu 11 140 -3 1003 221 30 5 chr9 91649432 91649631 -26212996 + MIR SINE MIR 6 209 -53 2079 117 4 0 chr9 91649986 91650296 -26212331 - AluSq SINE Alu 0 311 1 210 333 32 0 chr9 91650373 91650436 -26212191 - L2 LINE L2 -54 3218 3154 2512 64 0 0 chr9 91650515 91650812 -26211815 + AluY SINE Alu 1 297 -14 274 288 46 105 chr9 91650872 91651025 -26211602 - L2 LINE L2 -219 3053 2910 28 29 0 0 chr9 91651273 91651308 -26211319 + AT_rich Low_complexity Low_complexity 1 35 0 1595 188 40 13 chr9 91651379 91651683 -26210944 + AluJo SINE Alu 1 312 0 550 165 0 0 chr9 91651713 91651798 -26210829 + FLAM SINE Alu 44 128 -15 23 0 0 0 chr9 91651865 91651888 -26210739 + AT_rich Low_complexity Low_complexity 1 23 0 586 236 138 0 chr9 91652304 91652507 -26210120 + L2 LINE L2 1859 2089 -1225 297 232 0 0 chr9 91652636 91652705 -26209922 + L2 LINE L2 2403 2471 -843 333 289 70 14 chr9 91653480 91653622 -26209005 - L1M4 LINE L1 -1316 4830 4681 2422 55 3 3 chr9 91653634 91653924 -26208703 - AluSc SINE Alu -19 290 1 298 295 98 27 chr9 91654514 91654613 -26208014 + L2 LINE L2 3194 3303 -10 1306 191 125 4 chr9 91654613 91654885 -26207742 + AluJb SINE Alu 1 305 -7 298 295 98 27 chr9 91654885 91654897 -26207730 + L2 LINE L2 3303 3313 0 830 159 0 0 chr9 91655234 91655360 -26207267 + FLAM_C SINE Alu 1 126 -17 986 201 113 80 chr9 91655705 91655779 -26206848 + MSTC LTR MaLR 1 71 -357 2152 114 0 14 chr9 91655779 91656076 -26206551 - AluSq SINE Alu -20 293 1 986 201 113 80 chr9 91656076 91656415 -26206212 + MSTC LTR MaLR 71 428 0 193 274 20 0 chr9 91657013 91657064 -26205563 - MER5B DNA MER1_type 0 178 127 284 263 22 73 chr9 91657087 91657224 -26205403 - MER5B DNA MER1_type 0 178 49 430 261 102 97 chr9 91657266 91657365 -26205262 - L1ME LINE L1 -308 5813 5716 2344 70 0 14 chr9 91657365 91657651 -26204976 - AluSg SINE Alu -28 282 1 430 261 102 97 chr9 91657651 91657934 -26204693 - L1ME LINE L1 -405 5716 5429 213 230 253 23 chr9 91657957 91658044 -26204583 - L2 LINE L2 0 3313 3207 570 217 108 18 chr9 91658232 91658398 -26204229 - MIR SINE MIR -21 241 61 1445 159 78 22 chr9 91658398 91658668 -26203959 + AluJb SINE Alu 1 285 -27 411 199 7 22 chr9 91658676 91658812 -26203815 + GA-rich Low_complexity Low_complexity 5 138 0 188 322 51 0 chr9 91658821 91658880 -26203747 - MIR SINE MIR -195 67 6 1803 164 38 27 chr9 91660399 91660771 -26201856 + L1MB3 LINE L1 5806 6181 -2 2199 177 141 61 chr9 91660836 91661396 -26201231 + MER77 LTR ERV1 1 605 0 1142 153 81 34 chr9 91661937 91662146 -26200481 - MER20 DNA MER1_type 0 219 1 352 318 30 15 chr9 91662234 91662366 -26200261 + L2 LINE L2 3180 3313 0 1825 177 3 21 chr9 91662769 91663096 -26199531 - MLT1B LTR MaLR -5 385 65 360 303 67 8 chr9 91663145 91663264 -26199363 - L2 LINE L2 0 3272 3147 5195 129 54 31 chr9 91663313 91663580 -26199047 - MER4D LTR ERV1 0 903 644 1663 152 69 0 chr9 91663580 91663870 -26198757 + AluJb SINE Alu 1 310 -2 5195 129 54 31 chr9 91663870 91664467 -26198160 - MER4D LTR ERV1 -259 644 19 2111 130 3 7 chr9 91664467 91664774 -26197853 - AluSx SINE Alu -6 306 1 825 124 88 0 chr9 91664775 91664912 -26197715 + AluSg/x SINE Alu 140 288 -24 242 331 55 55 chr9 91664976 91665121 -26197506 - L2 LINE L2 -182 3090 2946 360 177 9 43 chr9 91665217 91665333 -26197294 - MER41B LTR ERV1 -12 597 403 432 136 0 0 chr9 91665333 91665399 -26197228 + Alu SINE Alu 241 306 -5 2344 148 5 30 chr9 91665399 91665805 -26196822 - MER41B LTR ERV1 -127 508 113 207 69 0 0 chr9 91666022 91666051 -26196576 + (A)n Simple_repeat Simple_repeat 1 29 0 23 33 0 0 chr9 91666944 91666974 -26195653 + AT_rich Low_complexity Low_complexity 1 30 0 180 250 0 23 chr9 91667288 91667332 -26195295 + MIR SINE MIR 68 110 -98 195 42 0 0 chr9 91667341 91667365 -26195262 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 379 358 68 27 chr9 91667370 91667518 -26195109 - L2 LINE L2 -15 3257 3104 262 243 43 0 chr9 91667547 91667617 -26195010 + MIR3 SINE MIR 120 192 -16 2073 97 4 4 chr9 91668025 91668304 -26194323 + AluSp SINE Alu 30 308 -5 234 0 0 0 chr9 91668616 91668642 -26193985 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2032 126 16 19 chr9 91670037 91670347 -26192280 - AluSx SINE Alu -3 309 1 22 35 0 0 chr9 91670499 91670528 -26192099 + AT_rich Low_complexity Low_complexity 1 29 0 319 242 157 34 chr9 91670654 91670832 -26191795 + L1M4 LINE L1 4080 4279 -1867 1582 184 16 32 chr9 91670849 91671164 -26191463 + AluJb SINE Alu 1 310 -2 28 29 0 0 chr9 91671273 91671308 -26191319 + AT_rich Low_complexity Low_complexity 1 35 0 295 208 32 56 chr9 91671368 91671493 -26191134 - L1MC4 LINE L1 -19 8023 7902 1920 133 4 4 chr9 91671878 91672157 -26190470 + AluSx SINE Alu 1 279 -33 3953 173 41 25 chr9 91672200 91672977 -26189650 - L1MB8 LINE L1 -51 6127 5338 496 167 21 0 chr9 91672986 91673082 -26189545 + MIR SINE MIR 164 261 -1 342 293 95 78 chr9 91673100 91673492 -26189135 - L1M4 LINE L1 -3546 2600 2197 1889 126 0 66 chr9 91673492 91673810 -26188817 - AluJb SINE Alu -5 307 11 342 293 95 78 chr9 91673810 91673878 -26188749 - L1M4 LINE L1 -3949 2197 2132 921 235 100 22 chr9 91674118 91674467 -26188160 - L1ME LINE L1 -561 5601 5217 1958 145 26 3 chr9 91674468 91674771 -26187856 + AluSx SINE Alu 1 310 -2 243 88 0 0 chr9 91674771 91674805 -26187822 + (GGGGA)n Simple_repeat Simple_repeat 4 37 0 355 265 81 42 chr9 91674805 91675065 -26187562 - L1ME LINE L1 -917 5229 4960 1077 128 12 18 chr9 91675065 91675229 -26187398 - FRAM SINE Alu -10 166 4 292 183 113 78 chr9 91675243 91675358 -26187269 - L1ME LINE L1 -1249 4897 4779 342 213 0 0 chr9 91675437 91675498 -26187129 + MER58 DNA MER1_type 2354 2414 -6 232 235 88 0 chr9 91675522 91675590 -26187037 - L1ME LINE L1 -1430 4716 4643 5360 140 34 12 chr9 91675993 91676898 -26185729 + L1MA8 LINE L1 5364 6288 -3 291 255 91 55 chr9 91676914 91677025 -26185602 + L1MC/D LINE L1 5173 5279 -1055 2273 108 3 3 chr9 91677025 91677332 -26185295 + AluSq SINE Alu 1 307 -6 291 255 91 55 chr9 91677332 91677571 -26185056 + L1MC/D LINE L1 5279 5539 -795 765 235 18 12 chr9 91677717 91677883 -26184744 - MIR SINE MIR -95 167 1 1945 124 55 68 chr9 91677950 91678258 -26184369 + THE1C LTR MaLR 1 305 -70 2161 77 6 49 chr9 91678258 91678583 -26184044 - AluY SINE Alu 0 311 1 1945 124 55 68 chr9 91678583 91678654 -26183973 + THE1C LTR MaLR 305 375 0 21 57 0 0 chr9 91678881 91678916 -26183711 + AT_rich Low_complexity Low_complexity 1 35 0 25 65 0 0 chr9 91679530 91679576 -26183051 + AT_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr9 91680320 91680341 -26182286 + AT_rich Low_complexity Low_complexity 1 21 0 2402 81 7 0 chr9 91680454 91680761 -26181866 - AluSp SINE Alu -3 310 2 3869 173 73 30 chr9 91681453 91681726 -26180901 + L1MC3 LINE L1 6817 7077 -708 2540 63 0 0 chr9 91681726 91682026 -26180601 + AluY SINE Alu 1 300 -11 3869 173 73 30 chr9 91682026 91682577 -26180050 + L1MC3 LINE L1 7077 7676 -109 402 125 28 28 chr9 91682577 91682645 -26179982 + L1MC2 LINE L1 6259 6330 -14 254 233 178 11 chr9 91682731 91682821 -26179806 + L2 LINE L2 3209 3313 0 185 397 0 0 chr9 91682969 91683047 -26179580 - L2 LINE L2 -7 3306 3229 2075 121 14 0 chr9 91683050 91683340 -26179287 + AluSx SINE Alu 1 294 -18 2086 137 0 13 chr9 91683905 91684218 -26178409 - AluJb SINE Alu -3 309 1 458 333 140 22 chr9 91684218 91684533 -26178094 + L2 LINE L2 2626 2977 -337 273 246 0 0 chr9 91684672 91684729 -26177898 + MER82 DNA MER2_type 1 57 -596 1260 174 157 53 chr9 91685015 91685323 -26177304 + MSTD LTR MaLR 1 352 -44 1981 142 28 0 chr9 91685323 91685611 -26177016 + AluSx SINE Alu 1 296 -16 1260 174 157 53 chr9 91685611 91685659 -26176968 + MSTD LTR MaLR 352 394 -2 767 162 0 0 chr9 91685739 91685950 -26176677 + FLAM_C SINE Alu 1 211 0 691 184 77 0 chr9 91687089 91687257 -26175370 - MER3 DNA MER1_type -28 181 1 630 120 0 0 chr9 91687315 91687415 -26175212 + L1MB3 LINE L1 6077 6176 -7 216 0 0 0 chr9 91688400 91688424 -26174203 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1323 139 0 5 chr9 91688430 91688617 -26174010 - AluJb SINE Alu -42 270 85 2261 78 7 0 chr9 91689598 91689907 -26172720 + AluSp SINE Alu 1 311 0 255 152 45 15 chr9 91689910 91689976 -26172651 + HAL1 LINE L1 1572 1639 -868 245 345 21 0 chr9 91690148 91690293 -26172334 + L1M4 LINE L1 2675 2822 -3324 21 36 0 0 chr9 91690315 91690343 -26172284 + AT_rich Low_complexity Low_complexity 1 28 0 1733 171 3 18 chr9 91690355 91690641 -26171986 + AluJo SINE Alu 1 282 -30 225 0 0 0 chr9 91690645 91690670 -26171957 + (CAA)n Simple_repeat Simple_repeat 2 26 0 26 64 0 0 chr9 91690763 91690810 -26171817 + AT_rich Low_complexity Low_complexity 1 47 0 240 226 0 97 chr9 91690939 91691032 -26171595 - L2 LINE L2 -9 3263 3180 1805 158 0 50 chr9 91692627 91692930 -26169697 + AluJo SINE Alu 3 290 -22 509 208 6 38 chr9 91693107 91693125 -26169502 - L1MA10 LINE L1 -2 6332 6315 1607 218 27 54 chr9 91693125 91693643 -26168984 - L1ME2 LINE L1 -9 6391 5888 515 191 0 0 chr9 91693704 91693798 -26168829 - AluJo SINE Alu -83 229 136 1971 183 73 67 chr9 91693798 91694675 -26167952 - L1ME2 LINE L1 -503 5899 5031 25 75 0 0 chr9 91694683 91694736 -26167891 + AT_rich Low_complexity Low_complexity 1 53 0 2168 155 11 8 chr9 91694738 91695119 -26167508 + MER57A LTR ERV1 22 403 0 1655 216 37 7 chr9 91695122 91695576 -26167051 - L1ME2 LINE L1 -1358 5024 4557 680 147 0 0 chr9 91695577 91695679 -26166948 - AluJo SINE Alu -182 130 29 360 263 6 74 chr9 91695679 91695854 -26166773 - L1ME2 LINE L1 -1819 4563 4401 6033 29 0 12 chr9 91695961 91696648 -26165979 - SVA Other Other 0 1386 708 2214 113 7 0 chr9 91696776 91697076 -26165551 + AluSx SINE Alu 1 302 -10 1691 114 114 7 chr9 91697181 91697452 -26165175 + AluSg1 SINE Alu 1 300 -9 265 228 163 65 chr9 91697853 91697976 -26164651 - HAL1b LINE L1 -882 466 332 395 285 70 60 chr9 91698008 91698208 -26164419 - L1ME2 LINE L1 -4979 1405 1204 870 130 7 29 chr9 91699090 91699228 -26163399 + AluSq/x SINE Alu 1 135 -178 1785 173 10 20 chr9 91699436 91699742 -26162885 - AluJb SINE Alu -9 303 1 1433 73 91 5 chr9 91699814 91700034 -26162593 - MER75B DNA T2_type 0 243 5 578 52 0 0 chr9 91700036 91700113 -26162514 - MER75B DNA T2_type -166 77 1 1332 190 53 53 chr9 91700117 91700401 -26162226 - AluJo SINE Alu -28 284 1 1345 158 124 31 chr9 91700474 91700733 -26161894 - AluSx SINE Alu -28 284 2 2075 110 25 3 chr9 91701486 91701768 -26160859 + AluSx SINE Alu 1 288 -24 29 28 0 0 chr9 91701943 91701979 -26160648 + AT_rich Low_complexity Low_complexity 1 36 0 348 236 0 0 chr9 91702031 91702120 -26160507 + (TA)n Simple_repeat Simple_repeat 1 89 0 252 184 0 0 chr9 91702162 91702211 -26160416 + (CATATA)n Simple_repeat Simple_repeat 4 52 0 1776 137 76 4 chr9 91702212 91702489 -26160138 - AluJb SINE Alu -15 297 1 2140 134 3 0 chr9 91702702 91702992 -26159635 - AluSx SINE Alu -19 293 3 1139 134 0 0 chr9 91703283 91703447 -26159180 - FRAM SINE Alu 0 40 1 631 181 80 0 chr9 91703532 91703670 -26158957 + L1ME2 LINE L1 6010 6158 -6 1568 146 3 96 chr9 91704005 91704327 -26158300 - AluJo SINE Alu -20 292 1 1696 155 9 64 chr9 91704333 91704662 -26157965 - AluJo SINE Alu -1 311 1 1943 56 16 8 chr9 91704669 91704919 -26157708 - AluY SINE Alu -15 296 45 553 344 53 8 chr9 91705230 91705474 -26157153 + MIR SINE MIR 8 262 0 206 294 0 15 chr9 91706363 91706431 -26156196 - MIR SINE MIR -11 251 185 4618 41 0 5 chr9 91706496 91707080 -26155547 + LTR10C LTR ERV1 11 591 0 299 236 90 35 chr9 91707080 91707224 -26155403 - Charlie8 DNA MER1_type -61 2356 2205 2142 110 6 25 chr9 91707276 91707593 -26155034 - AluSp SINE Alu -2 311 1 276 308 0 0 chr9 91707717 91707824 -26154803 - Charlie8 DNA MER1_type -346 2071 1965 875 104 7 62 chr9 91707824 91707968 -26154659 - AluJb SINE Alu -176 136 1 533 273 27 0 chr9 91707988 91708138 -26154489 - Charlie8 DNA MER1_type -674 1743 1590 735 282 97 10 chr9 91708259 91708557 -26154070 - Charlie8 DNA MER1_type -1158 1259 936 1052 171 60 5 chr9 91708565 91708764 -26153863 - MER46A DNA MER2_type -26 210 1 1613 256 114 32 chr9 91708766 91709102 -26153525 - Charlie8 DNA MER1_type -1483 934 627 2125 125 3 3 chr9 91709102 91709397 -26153230 - AluSx SINE Alu -17 295 1 1613 256 114 32 chr9 91709397 91709852 -26152775 - Charlie8 DNA MER1_type -1790 627 78 1879 159 0 7 chr9 91709856 91710145 -26152482 - AluJb SINE Alu -25 287 1 675 219 42 52 chr9 91710277 91710469 -26152158 - MIR SINE MIR -72 190 1 214 316 83 87 chr9 91710568 91710786 -26151841 - L3 LINE CR1 -493 1084 868 1341 186 26 64 chr9 91710922 91711233 -26151394 - AluJo SINE Alu -13 299 1 2436 97 0 3 chr9 91711299 91711610 -26151017 + AluSq SINE Alu 1 310 -3 1653 204 32 6 chr9 91711980 91712318 -26150309 + MER7A DNA MER2_type 1 345 -1 551 94 47 28 chr9 91712950 91713056 -26149571 + L1MB3 LINE L1 6075 6182 -1 1883 182 0 0 chr9 91713073 91713375 -26149252 + AluJb SINE Alu 1 302 -10 2361 74 10 0 chr9 91714022 91714318 -26148309 + AluSq SINE Alu 1 299 -14 383 291 163 15 chr9 91714322 91714518 -26148109 - L1M4 LINE L1 -1784 4362 4138 410 361 110 0 chr9 91714736 91715099 -26147528 - L1M4 LINE L1 -1690 4456 4054 1779 173 0 42 chr9 91715709 91716022 -26146605 - AluJo SINE Alu -12 300 1 2281 115 0 0 chr9 91716213 91716517 -26146110 - AluSx SINE Alu -8 304 1 202 250 179 0 chr9 91716739 91716823 -26145804 + MIR3 SINE MIR 79 177 -31 231 36 0 0 chr9 91717019 91717047 -26145580 + (TTAA)n Simple_repeat Simple_repeat 2 29 0 2122 114 0 0 chr9 91717047 91717336 -26145291 - AluSx SINE Alu -23 289 1 887 222 71 23 chr9 91717344 91717740 -26144887 - L1MC5 LINE L1 -182 7779 7365 209 297 109 0 chr9 91717809 91717873 -26144754 - L2 LINE L2 0 3313 3243 377 210 174 56 chr9 91718496 91718691 -26143936 - MER112 DNA MER1_type -37 223 6 2151 118 7 0 chr9 91718883 91719180 -26143447 - AluSx SINE Alu -13 299 1 295 339 139 9 chr9 91719259 91719374 -26143253 - L2 LINE L2 -2 3270 3141 2689 242 67 91 chr9 91719510 91719791 -26142836 - L2 LINE L2 -1 3312 3026 1830 162 30 3 chr9 91719791 91720087 -26142540 + AluJo SINE Alu 1 304 -8 2689 242 67 91 chr9 91720087 91720751 -26141876 - L2 LINE L2 -287 3026 2348 2262 102 3 13 chr9 91720751 91721065 -26141562 + AluSx SINE Alu 1 311 -1 2689 242 67 91 chr9 91721065 91721472 -26141155 - L2 LINE L2 -965 2348 1989 2460 122 46 19 chr9 91721472 91721848 -26140779 + MSTA LTR MaLR 1 391 -37 2398 79 0 22 chr9 91721848 91722163 -26140464 - AluSx SINE Alu -4 308 1 2460 122 46 19 chr9 91722163 91722203 -26140424 + MSTA LTR MaLR 391 428 0 2689 242 67 91 chr9 91722203 91722257 -26140370 - L2 LINE L2 -1324 1989 1935 441 244 171 0 chr9 91722285 91722449 -26140178 + L2 LINE L2 3122 3313 0 2038 116 13 23 chr9 91722754 91723056 -26139571 - AluSx SINE Alu -13 299 1 251 400 11 27 chr9 91723079 91723264 -26139363 - L2 LINE L2 -202 3070 2889 236 337 0 30 chr9 91723381 91723482 -26139145 - L2 LINE L2 -504 2810 2713 632 217 12 6 chr9 91724462 91724628 -26137999 + MER104 DNA Tc2 6 172 -8 853 224 116 22 chr9 91725453 91725685 -26136942 + MIR SINE MIR 9 262 0 976 176 0 52 chr9 91725695 91725888 -26136739 - FRAM SINE Alu -1 175 1 1494 137 126 7 chr9 91725974 91726244 -26136383 + AluJo SINE Alu 1 302 0 572 216 0 48 chr9 91726350 91726475 -26136152 + L2 LINE L2 3194 3312 -1 2378 109 0 0 chr9 91726929 91727241 -26135386 - AluSx SINE Alu 0 312 1 634 244 6 0 chr9 91727368 91727536 -26135091 + MER104 DNA Tc2 6 174 -6 1997 110 40 7 chr9 91727947 91728247 -26134380 + AluSg SINE Alu 1 310 0 189 0 0 0 chr9 91728817 91728838 -26133789 + (TA)n Simple_repeat Simple_repeat 2 22 0 2044 143 10 0 chr9 91728985 91729278 -26133349 - AluJb SINE Alu -15 297 2 715 306 39 31 chr9 91729744 91730002 -26132625 + MIR SINE MIR 3 262 0 313 320 50 0 chr9 91730000 91730100 -26132527 - MIR SINE MIR -123 139 35 * 27 0 0 0 chr9 91730161 91730188 -26132439 + AT_rich Low_complexity Low_complexity 1 27 0 541 168 0 0 chr9 91730310 91730411 -26132216 + FLAM_C SINE Alu 42 142 -1 1777 147 7 34 chr9 91730572 91730711 -26131916 + AluJb SINE Alu 1 142 -170 1967 139 4 0 chr9 91730711 91731030 -26131597 + AluSx SINE Alu 4 323 0 1777 147 7 34 chr9 91731030 91731181 -26131446 + AluJb SINE Alu 142 284 -28 2188 119 0 22 chr9 91731961 91732279 -26130348 + AluJb SINE Alu 1 311 -1 501 292 238 5 chr9 91733256 91733458 -26129169 - MIR SINE MIR -6 256 8 1432 127 0 10 chr9 91733513 91733718 -26128909 + AluJo SINE Alu 87 289 -23 2083 153 0 3 chr9 91734439 91734740 -26127887 + AluJo SINE Alu 3 302 -10 180 0 0 0 chr9 91734816 91734836 -26127791 + (T)n Simple_repeat Simple_repeat 1 20 0 1972 161 0 3 chr9 91734849 91735160 -26127467 - AluJo SINE Alu -2 310 1 2048 128 16 16 chr9 91735493 91735805 -26126822 - AluSx SINE Alu 0 312 1 796 153 80 43 chr9 91735809 91735972 -26126655 - L1MC1 LINE L1 -12 6321 6153 1774 152 12 46 chr9 91736323 91736646 -26125981 + AluJo SINE Alu 1 312 0 253 240 20 0 chr9 91737730 91737780 -26124847 + MIR SINE MIR 13 63 -199 372 273 161 19 chr9 91737950 91738111 -26124516 + MIR SINE MIR 18 201 -61 315 323 50 35 chr9 91738231 91738429 -26124198 - L1M4 LINE L1 -1983 4399 4199 1845 126 22 47 chr9 91738468 91738837 -26123790 - AluY SINE Alu 0 361 1 2428 101 0 0 chr9 91739062 91739368 -26123259 - AluSx SINE Alu -6 306 1 350 132 97 132 chr9 91739508 91739563 -26123064 - L1MB7 LINE L1 0 6184 6134 1535 152 121 11 chr9 91739563 91739827 -26122800 + AluSg SINE Alu 1 293 -17 350 132 97 132 chr9 91739827 91739885 -26122742 - L1MB7 LINE L1 -50 6134 6075 699 188 0 43 chr9 91740129 91740267 -26122360 + FLAM_C SINE Alu 1 132 -1 2204 115 10 0 chr9 91740329 91740624 -26122003 + AluSx SINE Alu 1 298 -14 1643 156 78 7 chr9 91740902 91741184 -26121443 + AluJb SINE Alu 1 302 -10 442 188 23 77 chr9 91741601 91741763 -26120864 - L1M4 LINE L1 -2417 3965 3811 401 216 235 26 chr9 91741761 91741914 -26120713 + L1ME3A LINE L1 5887 6071 -99 * 463 216 69 0 chr9 91741973 91742075 -26120552 + MER97a DNA MER1_type? 1 109 -785 2181 96 10 0 chr9 91742446 91742738 -26119889 + AluSx SINE Alu 1 295 -17 2276 103 0 0 chr9 91743372 91743674 -26118953 - AluJb SINE Alu -10 302 1 232 243 44 29 chr9 91743725 91743861 -26118766 - L1M4 LINE L1 -3925 2459 2322 698 206 30 0 chr9 91744305 91744436 -26118191 - FRAM SINE Alu -4 172 38 28 0 0 0 chr9 91744670 91744698 -26117929 + AT_rich Low_complexity Low_complexity 1 28 0 2034 132 3 0 chr9 91744698 91744985 -26117642 - AluSq SINE Alu -23 290 3 1074 167 18 0 chr9 91745068 91745236 -26117391 + FAM SINE Alu 1 171 -4 433 326 53 95 chr9 91745335 91746629 -26115998 + L2 LINE L2 977 2216 -1098 2058 105 28 3 chr9 91746864 91747150 -26115477 + AluSx SINE Alu 11 303 -9 1654 141 41 26 chr9 91747370 91747639 -26114988 + AluJo SINE Alu 21 293 -19 339 317 157 34 chr9 91747645 91748221 -26114406 + L2 LINE L2 2377 3020 -252 515 159 35 44 chr9 91748257 91748296 -26114331 - L1MB3 LINE L1 -2 6181 6143 2234 122 0 6 chr9 91748296 91748608 -26114019 - AluSq SINE Alu -3 310 1 515 159 35 44 chr9 91748608 91748681 -26113946 - L1MB3 LINE L1 -40 6143 6070 2560 68 0 0 chr9 91748682 91749015 -26113612 + AluY SINE Alu 2 334 0 799 145 26 7 chr9 91749015 91749167 -26113460 - L1MB3 LINE L1 -101 6082 5928 238 261 116 0 chr9 91749229 91749298 -26113329 + L2 LINE L2 3229 3305 -8 1752 154 19 29 chr9 91750448 91750760 -26111867 + AluJb SINE Alu 1 309 -3 214 269 0 0 chr9 91750907 91750959 -26111668 + (TATATG)n Simple_repeat Simple_repeat 6 57 0 2289 94 0 7 chr9 91751063 91751360 -26111267 - AluSq SINE Alu -18 295 1 257 195 0 110 chr9 91751403 91751485 -26111142 + L2 LINE L2 3196 3268 -4 430 270 73 51 chr9 91751639 91751776 -26110851 - MIR SINE MIR -116 146 7 2042 139 3 0 chr9 91752163 91752458 -26110169 + AluSx SINE Alu 1 296 -16 369 0 0 0 chr9 91752582 91752623 -26110004 + (TG)n Simple_repeat Simple_repeat 2 42 0 3109 192 33 85 chr9 91752673 91753242 -26109385 - L1ME1 LINE L1 -6 6160 5563 861 129 0 95 chr9 91753242 91753389 -26109238 - FLAM_C SINE Alu 0 133 1 3109 192 33 85 chr9 91753389 91753531 -26109096 - L1ME1 LINE L1 -603 5563 5415 336 167 0 0 chr9 91753531 91753579 -26109048 - MER66B LTR ERV1 -141 345 298 3109 192 33 85 chr9 91753579 91753650 -26108977 - L1ME1 LINE L1 -751 5415 5342 2132 123 14 0 chr9 91753650 91753942 -26108685 - AluSx SINE Alu -16 296 1 3109 192 33 85 chr9 91753942 91754067 -26108560 - L1ME1 LINE L1 -824 5342 5212 764 198 0 0 chr9 91754067 91754183 -26108444 + FLAM_C SINE Alu 2 117 -16 447 35 0 0 chr9 91754183 91754240 -26108387 + (CA)n Simple_repeat Simple_repeat 2 58 0 3109 192 33 85 chr9 91754240 91754447 -26108180 - L1ME1 LINE L1 -952 5214 5106 291 288 0 9 chr9 91754456 91754567 -26108060 - L1ME1 LINE L1 -1739 4407 4298 1104 174 22 121 chr9 91754660 91755073 -26107554 - L1MB7 LINE L1 0 6184 5813 * 4011 190 45 29 chr9 91755068 91755111 -26107516 - L1MB5 LINE L1 0 6174 6133 2192 117 0 0 chr9 91755111 91755410 -26107217 - AluSx SINE Alu -13 299 1 4011 190 45 29 chr9 91755410 91756254 -26106373 - L1MB5 LINE L1 -41 6133 5254 2257 82 21 0 chr9 91756254 91756545 -26106082 + AluSx SINE Alu 1 297 -15 4011 190 45 29 chr9 91756545 91756981 -26105646 - L1MB5 LINE L1 -920 5254 4826 2513 171 43 27 chr9 91757003 91757519 -26105108 + L1MB5 LINE L1 5597 6120 -54 814 224 0 6 chr9 91757529 91757690 -26104937 - MLT1A2 LTR MaLR -214 160 1 1429 248 133 9 chr9 91757776 91758227 -26104400 - HAL1 LINE L1 -604 1903 1397 382 246 154 12 chr9 91758257 91758497 -26104130 - HAL1 LINE L1 -1201 1306 1033 197 156 0 65 chr9 91758563 91758640 -26103987 + CT-rich Low_complexity Low_complexity 1 72 0 358 274 108 67 chr9 91758644 91759016 -26103611 - HAL1 LINE L1 -1479 1028 642 193 217 65 0 chr9 91759099 91759145 -26103482 + MIR3 SINE MIR 120 168 -40 28 0 0 0 chr9 91759211 91759239 -26103388 + AT_rich Low_complexity Low_complexity 1 28 0 1525 143 108 21 chr9 91759391 91759678 -26102949 + AluJb SINE Alu 1 312 0 368 202 53 32 chr9 91759692 91759786 -26102841 + MIR SINE MIR 37 132 -130 197 333 86 12 chr9 91759791 91759872 -26102755 - L2 LINE L2 -32 3281 3195 21 95 0 0 chr9 91760946 91761009 -26101618 + AT_rich Low_complexity Low_complexity 1 63 0 1399 185 80 22 chr9 91761234 91761558 -26101069 + MLT1B LTR MaLR 1 343 -47 609 141 0 0 chr9 91761561 91761646 -26100981 + FLAM_C SINE Alu 35 119 -24 404 96 0 0 chr9 91761668 91761720 -26100907 + MLT1B LTR MaLR 339 390 0 248 258 97 0 chr9 91761899 91761985 -26100642 - MIR3 SINE MIR -39 169 73 1689 158 124 17 chr9 91762062 91762417 -26100210 + LTR54B LTR ERV1 104 496 -2 880 276 64 21 chr9 91762513 91762796 -26099831 - MER21-int LTR ERV1 -2291 4467 1267 284 146 219 24 chr9 91762797 91762879 -26099748 - MER67D LTR ERV1 -289 225 128 698 235 19 12 chr9 91763018 91763180 -26099447 - MER21-int LTR ERV1 -4104 1019 857 1397 183 7 121 chr9 91763284 91763670 -26098957 - MER21-int LTR ERV1 -6692 845 511 1874 139 38 0 chr9 91763670 91763957 -26098670 + AluSg SINE Alu 1 298 -12 1397 183 7 121 chr9 91763957 91764001 -26098626 - MER21-int LTR ERV1 -7026 511 464 660 9 37 28 chr9 91764049 91764156 -26098471 + (TCTA)n Simple_repeat Simple_repeat 4 111 0 2368 152 98 82 chr9 91764156 91764959 -26097668 + MER21B LTR ERV1 27 862 -1 1432 151 10 93 chr9 91765017 91765308 -26097319 - AluJo SINE Alu -45 267 1 1584 223 57 20 chr9 91765363 91765817 -26096810 - L1M4 LINE L1 -1840 4306 3836 773 195 16 0 chr9 91765822 91765950 -26096677 - FLAM_C SINE Alu -3 130 1 25 31 0 0 chr9 91765950 91765982 -26096645 + AT_rich Low_complexity Low_complexity 1 32 0 5046 214 52 115 chr9 91766058 91767009 -26095618 + L1M3b LINE L1 16 1025 -5326 2269 91 7 7 chr9 91767009 91767307 -26095320 - AluSq SINE Alu -15 298 1 5046 214 52 115 chr9 91767307 91767671 -26094956 + L1M3b LINE L1 1025 1410 -4941 2530 78 0 0 chr9 91767671 91767978 -26094649 - AluY SINE Alu -4 307 1 5046 214 52 115 chr9 91767978 91768498 -26094129 + L1M3b LINE L1 1410 1658 -4693 2198 129 3 3 chr9 91768498 91768809 -26093818 + AluSp SINE Alu 1 311 -2 5046 214 52 115 chr9 91768809 91769236 -26093391 + L1M3b LINE L1 1658 2110 -4241 1875 186 24 40 chr9 91769293 91769664 -26092963 + MLT1A1 LTR MaLR 1 365 0 2297 95 0 3 chr9 91769674 91769979 -26092648 - AluSg SINE Alu -3 307 4 2319 92 0 0 chr9 91770149 91770442 -26092185 + AluY SINE Alu 1 293 -18 296 286 51 0 chr9 91770474 91770572 -26092055 - L1M4 LINE L1 -2291 3855 3753 1780 130 51 7 chr9 91770607 91770912 -26091715 - AluY SINE Alu 0 311 1 815 173 8 0 chr9 91770916 91771043 -26091584 - FLAM_C SINE Alu -4 129 2 1397 243 49 35 chr9 91771118 91771589 -26091038 - L1M4 LINE L1 -2978 3168 2688 1642 154 21 76 chr9 91771589 91771746 -26090881 + AluJo SINE Alu 1 132 -180 2435 94 0 0 chr9 91771746 91772055 -26090572 + AluSc SINE Alu 1 309 0 1642 154 21 76 chr9 91772055 91772227 -26090400 + AluJo SINE Alu 132 312 0 1397 243 49 35 chr9 91772227 91772265 -26090362 - L1M4 LINE L1 -3458 2688 2652 1794 172 0 10 chr9 91772424 91772727 -26089900 - AluJo SINE Alu -12 300 1 1701 178 26 23 chr9 91772750 91773098 -26089529 - L1MB8 LINE L1 -1 6177 5829 1394 131 128 106 chr9 91773098 91773225 -26089402 - MER73 LTR ERVL -1 643 520 2032 131 3 13 chr9 91773225 91773530 -26089097 + AluSx SINE Alu 1 302 -10 1394 131 128 106 chr9 91773530 91773629 -26088998 - MER73 LTR ERVL -124 520 425 1545 170 0 7 chr9 91773629 91773925 -26088702 + AluJb SINE Alu 13 306 0 1394 131 128 106 chr9 91773925 91774056 -26088571 - MER73 LTR ERVL -219 425 276 962 170 0 12 chr9 91774060 91774231 -26088396 - AluJo SINE Alu -131 181 13 3926 145 18 33 chr9 91774675 91775343 -26087284 - L1MB2 LINE L1 -5 6166 5509 921 244 45 20 chr9 91775816 91776062 -26086565 + MIR SINE MIR 6 257 -5 25 0 0 0 chr9 91777369 91777394 -26085233 + GC_rich Low_complexity Low_complexity 1 25 0 321 26 0 0 chr9 91777919 91777957 -26084670 + (TG)n Simple_repeat Simple_repeat 2 39 0 1717 185 11 3 chr9 91780961 91781248 -26081379 - AluJo SINE Alu -23 289 1 213 65 0 0 chr9 91781529 91781560 -26081067 + (T)n Simple_repeat Simple_repeat 1 31 0 21 0 0 0 chr9 91781939 91781960 -26080667 + AT_rich Low_complexity Low_complexity 1 21 0 2226 177 18 5 chr9 91782098 91782483 -26080144 - MLT1B LTR MaLR 0 390 1 218 195 0 0 chr9 91782510 91782551 -26080076 + (CATA)n Simple_repeat Simple_repeat 1 41 0 1537 187 17 23 chr9 91782735 91783034 -26079593 - AluJb SINE Alu -15 297 1 585 348 43 4 chr9 91783220 91783499 -26079128 + L2 LINE L2 2224 2513 -801 464 276 152 16 chr9 91783586 91783836 -26078791 - HAL1b LINE L1 -614 734 451 1122 242 14 0 chr9 91783836 91784051 -26078576 - MER58A DNA MER1_type 0 224 7 395 276 87 80 chr9 91784190 91784466 -26078161 - HAL1b LINE L1 -1043 1303 1030 1700 163 35 3 chr9 91784466 91784748 -26077879 - AluJb SINE Alu -19 293 3 395 276 87 80 chr9 91784748 91784985 -26077642 - HAL1b LINE L1 -1316 1030 58 1096 180 35 5 chr9 91784995 91785195 -26077432 - AluJb SINE Alu -106 206 1 938 216 103 66 chr9 91785432 91785751 -26076876 + L1ME3A LINE L1 5424 5754 -416 473 208 114 25 chr9 91785972 91786160 -26076467 + MLT1H1 LTR MaLR 341 545 -4 1569 207 42 30 chr9 91786163 91786569 -26076058 + L1ME3A LINE L1 5760 6170 0 993 147 29 76 chr9 91787018 91787168 -26075459 - L1MD2 LINE L1 -16 6343 6206 2005 158 15 55 chr9 91787168 91787572 -26075055 + MLT1B LTR MaLR 3 390 0 993 147 29 76 chr9 91787572 91787659 -26074968 - L1MD2 LINE L1 -153 6206 6117 3933 154 39 26 chr9 91788607 91789334 -26073293 - L1MA5 LINE L1 0 6300 5565 2591 72 0 0 chr9 91789663 91789970 -26072657 - AluY SINE Alu -4 307 1 23 0 0 0 chr9 91790074 91790097 -26072530 + AT_rich Low_complexity Low_complexity 1 23 0 2114 106 11 0 chr9 91790097 91790381 -26072246 - AluSx SINE Alu -25 287 1 953 128 0 0 chr9 91790439 91790572 -26072055 - FLAM_C SINE Alu 0 133 1 1614 169 0 59 chr9 91790809 91791129 -26071498 + AluJo SINE Alu 1 301 -11 1513 179 0 26 chr9 91791173 91791441 -26071186 + AluJo SINE Alu 35 295 -17 283 299 29 69 chr9 91791960 91792134 -26070493 + L1ME4a LINE L1 5383 5549 -572 350 222 74 0 chr9 91792157 91792265 -26070362 - L1ME3A LINE L1 -14 6156 6041 268 200 0 86 chr9 91792456 91792526 -26070101 - L1ME3A LINE L1 -588 5576 5513 642 195 59 0 chr9 91792692 91792810 -26069817 + MER58B DNA MER1_type 217 341 0 277 288 99 8 chr9 91792810 91792941 -26069686 + L1ME4a LINE L1 5698 5842 -279 1065 275 34 74 chr9 91792942 91793354 -26069273 - L2 LINE L2 -11 3302 2914 1553 128 143 4 chr9 91793354 91793619 -26069008 + AluJo SINE Alu 1 302 0 1065 275 34 74 chr9 91793619 91793731 -26068896 - L2 LINE L2 -399 2914 2799 305 194 90 0 chr9 91793837 91793904 -26068723 + L1ME4a LINE L1 5957 6029 -92 189 0 0 0 chr9 91793908 91793929 -26068698 + (TA)n Simple_repeat Simple_repeat 2 22 0 269 234 32 117 chr9 91794144 91794171 -26068456 - MIR3 SINE MIR -24 184 156 2203 113 0 7 chr9 91794171 91794471 -26068156 - AluSx SINE Alu -14 298 1 269 234 32 117 chr9 91794471 91794537 -26068090 - MIR3 SINE MIR -52 156 99 222 174 0 0 chr9 91794757 91794803 -26067824 + (TATG)n Simple_repeat Simple_repeat 3 48 0 1483 170 62 20 chr9 91794810 91795210 -26067417 - L1MA4A LINE L1 -23 6277 5818 645 216 175 5 chr9 91795231 91795425 -26067202 + MIR SINE MIR 7 233 -29 2407 68 0 0 chr9 91796157 91796457 -26066170 + AluY SINE Alu 1 300 0 1475 204 10 25 chr9 91797322 91797636 -26064991 - AluJo SINE Alu -3 309 1 718 205 0 0 chr9 91797735 91797899 -26064728 - FLAM_C SINE Alu 0 180 17 1961 91 15 8 chr9 91799180 91799443 -26063184 - AluSx SINE Alu -7 305 41 246 234 18 108 chr9 91800218 91800329 -26062298 + MIR SINE MIR 149 249 -13 571 266 119 52 chr9 91800667 91801189 -26061438 - L2 LINE L2 -129 3184 1253 * 905 167 52 23 chr9 91801165 91801339 -26061288 + MER5A DNA MER1_type 11 189 0 352 268 86 5 chr9 91801339 91801517 -26061110 - L2 LINE L2 -2028 1286 996 2917 230 98 32 chr9 91801523 91802554 -26060073 + L1M4 LINE L1 2960 4058 -2088 321 338 7 15 chr9 91802578 91802714 -26059913 - L2 LINE L2 0 3313 3179 1244 131 0 0 chr9 91802812 91802987 -26059640 - AluSg/x SINE Alu -4 308 134 2618 60 0 0 chr9 91802987 91803287 -26059340 - AluSx SINE Alu -12 300 1 21 36 0 0 chr9 91803658 91803686 -26058941 + GC_rich Low_complexity Low_complexity 1 28 0 2855 87 24 91 chr9 91803737 91804553 -26058074 + SVA Other Other 393 868 -520 1731 94 5 0 chr9 91804655 91804878 -26057749 - AluSq SINE Alu -89 224 1 634 247 39 11 chr9 91805203 91805381 -26057246 - L1PB4 LINE L1 -13 6143 5961 2468 104 0 0 chr9 91805382 91805690 -26056937 - AluSx SINE Alu -4 308 1 2023 147 0 0 chr9 91806191 91806497 -26056130 - AluJb SINE Alu -4 308 3 356 280 50 35 chr9 91806527 91806727 -26055900 - L1MC5 LINE L1 -46 7915 7713 1171 91 0 36 chr9 91807020 91807185 -26055442 - AluSg/x SINE Alu -17 293 135 275 277 43 11 chr9 91807914 91808008 -26054619 + L1ME4a LINE L1 6007 6103 -18 2118 185 52 11 chr9 91808049 91808493 -26054134 + L1MB8 LINE L1 5714 6175 -3 215 31 31 0 chr9 91808580 91808612 -26054015 + (TG)n Simple_repeat Simple_repeat 2 34 0 2219 70 3 76 chr9 91808612 91808928 -26053699 - AluSg SINE Alu -17 293 1 320 175 0 32 chr9 91808935 91808998 -26053629 - AluJb SINE Alu -169 133 73 1534 168 28 4 chr9 91809004 91809254 -26053373 - AluJo SINE Alu -16 296 41 296 272 117 37 chr9 91809682 91809844 -26052783 - L1ME3A LINE L1 -8 6162 5988 815 221 13 0 chr9 91809940 91810094 -26052533 + MER58D DNA MER1_type 6 161 -225 1528 152 76 0 chr9 91810100 91810364 -26052263 - AluJo SINE Alu -3 309 26 1562 195 89 10 chr9 91810540 91810945 -26051682 + MLT1C LTR MaLR 1 437 -30 2425 84 0 0 chr9 91810946 91811242 -26051385 - AluSc SINE Alu -13 296 1 519 233 20 62 chr9 91811259 91811462 -26051165 - L1ME3A LINE L1 -615 5547 5355 4670 57 20 6 chr9 91811462 91812479 -26050148 + MER11A LTR ERVK 1 1266 0 27369 82 5 15 chr9 91812479 91816053 -26046574 + HERVK11 LTR ERVK 1 3539 -4414 20790 62 4 2 chr9 91816049 91818578 -26044049 + HERVK11 LTR ERVK 5421 7953 0 * 4483 61 22 22 chr9 91818578 91819616 -26043011 + MER11A LTR ERVK 1 1266 0 2031 113 69 0 chr9 91819654 91819945 -26042682 - AluSp SINE Alu -2 311 1 244 253 71 0 chr9 91819995 91820094 -26042533 - L1ME3A LINE L1 -886 5260 5155 1226 212 11 26 chr9 91820099 91820363 -26042264 - AluJo SINE Alu -30 282 23 2237 123 0 0 chr9 91820366 91820675 -26041952 - AluSx SINE Alu 0 309 1 2020 134 7 0 chr9 91820816 91821100 -26041527 + AluJo SINE Alu 1 286 -26 1140 266 79 47 chr9 91821116 91821456 -26041171 - L1ME3A LINE L1 -1135 5011 4641 2111 120 0 0 chr9 91821456 91821786 -26040841 - AluSx SINE Alu 0 330 1 1140 266 79 47 chr9 91821786 91822041 -26040586 - L1ME3A LINE L1 -1505 4641 4396 327 191 31 144 chr9 91822052 91822246 -26040381 - L1MC4 LINE L1 0 8042 7871 1825 159 20 0 chr9 91822247 91822542 -26040085 + AluJb SINE Alu 1 301 -11 1007 248 72 81 chr9 91822576 91822803 -26039824 - L1MC4 LINE L1 -294 7748 7521 1876 131 46 14 chr9 91822803 91823085 -26039542 - AluSg SINE Alu -18 292 2 2460 77 0 0 chr9 91823088 91823386 -26039241 - AluSg SINE Alu -10 300 3 2014 164 0 0 chr9 91823387 91823692 -26038935 - AluJb SINE Alu -7 305 1 1007 248 72 81 chr9 91823692 91823913 -26038714 - L1MC4 LINE L1 -522 7520 7298 1861 147 10 10 chr9 91824054 91824354 -26038273 + AluJo SINE Alu 6 305 -7 816 216 71 48 chr9 91824355 91824706 -26037921 - L1MC5 LINE L1 -194 7767 7409 1599 195 11 7 chr9 91824782 91825064 -26037563 - AluJb SINE Alu -24 288 6 248 324 34 6 chr9 91825072 91825251 -26037376 - L1ME3A LINE L1 -1820 4326 4143 298 104 0 42 chr9 91825430 91825478 -26037149 + FLAM SINE Alu 82 127 -6 766 144 15 30 chr9 91825495 91825627 -26037000 + FLAM_C SINE Alu 1 130 -3 2222 98 10 13 chr9 91825643 91825776 -26036851 + AluSx SINE Alu 1 133 -179 2122 101 17 27 chr9 91825776 91826073 -26036554 + AluSg SINE Alu 1 294 -16 2222 98 10 13 chr9 91826073 91826246 -26036381 + AluSx SINE Alu 133 306 -6 1886 132 75 60 chr9 91826538 91826939 -26035688 + LTR61 LTR ERV1 189 595 0 437 162 54 0 chr9 91826945 91827019 -26035608 - AluJb SINE Alu -79 233 156 1647 166 18 14 chr9 91827568 91827851 -26034776 + AluJo SINE Alu 1 284 -28 324 338 50 15 chr9 91827865 91828066 -26034561 + L1MB2 LINE L1 4763 4970 -1176 2160 129 3 0 chr9 91828198 91828500 -26034127 + AluSx SINE Alu 3 305 -7 1081 188 30 0 chr9 91828871 91829073 -26033554 - MER20 DNA MER1_type 0 219 12 759 272 93 38 chr9 91829073 91829285 -26033342 + L1MB2 LINE L1 5373 5572 -2236 1927 104 3 85 chr9 91829285 91829613 -26033014 - AluSx SINE Alu -11 301 1 759 272 93 38 chr9 91829613 91829797 -26032830 + L1MB2 LINE L1 5572 5791 -2017 245 128 0 0 chr9 91829797 91829836 -26032791 + Tigger4(Zombi) DNA MER2_type 1 39 -2692 * 391 119 45 0 chr9 91829812 91829879 -26032748 + Tigger4(Zombi) DNA MER2_type 2662 2731 0 2168 76 28 10 chr9 91829915 91830203 -26032424 + AluSc SINE Alu 1 293 -16 560 207 22 52 chr9 91830242 91830377 -26032250 + FLAM_A SINE Alu 2 132 -1 267 31 0 0 chr9 91830448 91830480 -26032147 + (TG)n Simple_repeat Simple_repeat 2 33 0 985 132 66 15 chr9 91830689 91830886 -26031741 + L1MB2 LINE L1 5958 6164 -7 2203 89 7 10 chr9 91832360 91832664 -26029963 - AluSx SINE Alu -9 303 1 279 341 0 0 chr9 91832665 91832756 -26029871 + MER102b DNA MER1_type 251 341 0 220 385 111 20 chr9 91833516 91833768 -26028859 - L2 LINE L2 -618 2696 2422 7458 148 29 5 chr9 91884228 91885420 -25977207 - Ricksha DNA DNA -1903 1343 123 423 236 98 46 chr9 91885429 91885603 -25977024 - MLT1J LTR MaLR -328 183 1 674 146 49 24 chr9 91885645 91885768 -25976859 + FLAM_C SINE Alu 5 130 -3 269 36 54 36 chr9 91885777 91885833 -25976794 + (TAAAAA)n Simple_repeat Simple_repeat 4 60 0 219 233 126 78 chr9 91885982 91886085 -25976542 - MIR3 SINE MIR -87 121 14 191 36 36 0 chr9 91886292 91886320 -25976307 + (TTCA)n Simple_repeat Simple_repeat 2 30 0 2391 75 3 0 chr9 91887565 91887859 -25974768 - AluSp SINE Alu -18 295 1 737 237 127 13 chr9 91889023 91889251 -25973376 - MIR SINE MIR 0 262 9 194 289 19 0 chr9 91889468 91889520 -25973107 + L2 LINE L2 3254 3306 -7 427 316 67 88 chr9 91889649 91890290 -25972337 - L2 LINE L2 0 3272 2638 1575 155 25 40 chr9 91890562 91890840 -25971787 + AluJo SINE Alu 1 274 -38 22 0 0 0 chr9 91890860 91890882 -25971745 + AT_rich Low_complexity Low_complexity 1 22 0 667 276 40 18 chr9 91892624 91892849 -25969778 - MIR SINE MIR -30 232 3 253 283 97 41 chr9 91892851 91892996 -25969631 - L2 LINE L2 -1337 1977 1825 263 229 14 57 chr9 91893227 91893297 -25969330 + MER5A DNA MER1_type 8 74 -115 443 265 103 54 chr9 91894746 91894969 -25967658 - L2 LINE L2 -1 3312 3079 198 328 57 16 chr9 91895169 91895291 -25967336 + L2 LINE L2 2905 3031 -241 28 0 0 0 chr9 91896658 91896686 -25965941 + AT_rich Low_complexity Low_complexity 1 28 0 387 159 53 0 chr9 91896687 91896857 -25965770 + (TA)n Simple_repeat Simple_repeat 2 180 0 789 333 107 13 chr9 91897396 91897862 -25964765 + L2 LINE L2 2804 3313 0 1916 121 85 0 chr9 91898848 91899129 -25963498 + AluSx SINE Alu 2 306 -6 897 262 62 113 chr9 91899389 91900000 -25962627 + HAL1b LINE L1 245 824 -524 1510 151 0 8 chr9 91900281 91900520 -25962107 + AluJb SINE Alu 1 237 -75 742 191 0 0 chr9 91900532 91900663 -25961964 + FLAM_A SINE Alu 1 131 -2 1827 177 0 0 chr9 91901332 91901626 -25961001 - AluJo SINE Alu -18 294 1 587 305 101 58 chr9 91901752 91902408 -25960219 + L1ME3A LINE L1 2745 3428 -2718 468 277 105 73 chr9 91902578 91903292 -25959335 + L1ME3A LINE L1 3698 4434 -1712 397 306 77 55 chr9 91903357 91903759 -25958868 + L1ME3A LINE L1 4488 4898 -1248 23 54 0 0 chr9 91903809 91903846 -25958781 + AT_rich Low_complexity Low_complexity 1 37 0 1370 181 45 45 chr9 91903901 91904188 -25958439 + AluJo SINE Alu 3 289 -13 2776 246 55 12 chr9 91904464 91905569 -25957058 + L1ME3A LINE L1 4976 6169 -1 1515 104 5 0 chr9 91905981 91906183 -25956444 + AluSg/x SINE Alu 95 297 -13 624 223 84 28 chr9 91906183 91906398 -25956229 - Charlie2a DNA MER1_type -1909 953 727 283 258 32 11 chr9 91906384 91906477 -25956150 - Charlie2a DNA MER1_type -2383 479 385 * 309 324 20 0 chr9 91906632 91906734 -25955893 - Charlie2a DNA MER1_type -2635 147 44 195 250 0 23 chr9 91907713 91907757 -25954870 + MER5A DNA MER1_type 126 168 -21 32 0 0 0 chr9 91909760 91909792 -25952835 + AT_rich Low_complexity Low_complexity 1 32 0 27 29 0 0 chr9 91910072 91910106 -25952521 + AT_rich Low_complexity Low_complexity 1 34 0 303 230 54 47 chr9 91911539 91911687 -25950940 - L1ME4a LINE L1 -38 6083 5935 26 0 0 0 chr9 91912350 91912376 -25950251 + AT_rich Low_complexity Low_complexity 1 26 0 1691 131 33 4 chr9 91912500 91912745 -25949882 - AluJo SINE Alu -30 282 31 619 257 146 6 chr9 91913949 91914186 -25948441 - MIR SINE MIR -3 259 8 237 188 21 0 chr9 91915578 91915626 -25947001 - MIR3 SINE MIR -9 199 151 1782 153 0 43 chr9 91915881 91916182 -25946445 - AluJo SINE Alu -16 296 9 22 35 0 0 chr9 91917382 91917411 -25945216 + AT_rich Low_complexity Low_complexity 1 29 0 1985 142 0 13 chr9 91918209 91918511 -25944116 + AluSx SINE Alu 1 298 -14 21 0 0 0 chr9 91919198 91919219 -25943408 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr9 91919493 91919527 -25943100 + AT_rich Low_complexity Low_complexity 1 34 0 683 192 0 8 chr9 91921100 91921225 -25941402 + FLAM_C SINE Alu 1 124 -9 25 0 0 0 chr9 91921225 91921250 -25941377 + AT_rich Low_complexity Low_complexity 1 25 0 1761 168 3 29 chr9 91921978 91922294 -25940333 + AluJo SINE Alu 1 308 -4 574 256 57 30 chr9 91922544 91922774 -25939853 - L1ME4a LINE L1 -284 5837 5602 357 281 87 51 chr9 91922862 91923115 -25939512 - L1ME4a LINE L1 -104 6017 5756 289 266 149 59 chr9 91923180 91924172 -25938455 - L1ME4a LINE L1 -754 5392 4491 1814 246 59 55 chr9 91924204 91924920 -25937707 - L1ME3A LINE L1 0 6239 5521 2365 80 0 7 chr9 91924969 91925269 -25937358 - AluSq SINE Alu -15 298 1 460 62 0 0 chr9 91925331 91925395 -25937232 - L1PA13 LINE L1 -19 6144 6081 465 234 29 111 chr9 91925407 91925723 -25936904 - L1ME3A LINE L1 -896 5319 5030 * 2110 268 111 38 chr9 91925722 91925943 -25936684 - L1MEc LINE L1 -2383 3832 3629 405 0 0 0 chr9 91925953 91925998 -25936629 + (TG)n Simple_repeat Simple_repeat 2 46 0 1643 189 3 7 chr9 91925998 91926284 -25936343 - AluJb SINE Alu -25 287 1 2110 268 111 38 chr9 91926284 91926839 -25935788 - L1MEc LINE L1 -2586 3629 3116 196 29 0 57 chr9 91926839 91926874 -25935753 + (TA)n Simple_repeat Simple_repeat 2 34 0 2110 268 111 38 chr9 91926874 91927665 -25934962 - L1MEc LINE L1 -3099 3116 2169 279 325 62 17 chr9 91927947 91928105 -25934522 - L1MEc LINE L1 -4588 1808 1634 2079 109 23 0 chr9 91928105 91928407 -25934220 - AluSq SINE Alu -4 309 1 279 325 62 17 chr9 91928407 91928488 -25934139 - L1MEc LINE L1 -4762 1634 1558 2417 46 3 43 chr9 91928688 91929011 -25933616 + AluY SINE Alu 1 310 -1 2196 81 3 0 chr9 91929548 91929833 -25932794 + AluY SINE Alu 25 310 -1 486 292 22 44 chr9 91930293 91930519 -25932108 + MLT1L LTR MaLR 369 589 -26 1771 135 37 30 chr9 91931065 91931362 -25931265 + AluJb SINE Alu 1 299 -13 381 194 41 20 chr9 91931842 91931940 -25930687 + L2 LINE L2 1441 1540 -1774 1914 250 46 6 chr9 91931954 91932478 -25930149 + L2 LINE L2 1713 2257 -1057 1301 240 122 92 chr9 91932488 91933021 -25929606 + MLT1H1 LTR MaLR 1 555 0 310 163 33 87 chr9 91933021 91933113 -25929514 + L2 LINE L2 2263 2349 -965 1582 178 7 14 chr9 91933172 91933458 -25929169 - AluJo SINE Alu -6 306 23 902 222 90 70 chr9 91933608 91933951 -25928676 + L2 LINE L2 2363 2712 -602 4400 124 61 22 chr9 91933952 91934725 -25927902 + L1MB3 LINE L1 5377 6179 -4 229 217 0 0 chr9 91934751 91934797 -25927830 + L2 LINE L2 2755 2800 -514 1607 132 21 117 chr9 91934898 91935232 -25927395 - AluJb SINE Alu -8 304 3 1812 104 50 47 chr9 91935237 91935516 -25927111 - AluSg SINE Alu -24 286 7 2055 114 7 39 chr9 91935526 91935832 -25926795 - AluSx SINE Alu -12 300 5 4458 180 39 5 chr9 91938690 91939682 -25922945 - L1MB7 LINE L1 0 6184 5155 25 0 0 0 chr9 91940839 91940864 -25921763 + AT_rich Low_complexity Low_complexity 1 25 0 28 29 0 0 chr9 91941369 91941404 -25921223 + AT_rich Low_complexity Low_complexity 1 35 0 509 310 78 55 chr9 91941515 91942002 -25920625 - L1M4 LINE L1 -913 5233 4736 248 221 13 0 chr9 91942730 91942807 -25919820 + (TA)n Simple_repeat Simple_repeat 2 79 0 2250 115 0 0 chr9 91942861 91943166 -25919461 + AluSx SINE Alu 3 307 -5 21 0 0 0 chr9 91943402 91943423 -25919204 + AT_rich Low_complexity Low_complexity 1 21 0 812 294 33 5 chr9 91943444 91943655 -25918972 + MIR SINE MIR 34 250 -12 343 197 0 42 chr9 91943775 91943846 -25918781 + MER5A DNA MER1_type 12 79 -110 1578 64 14 5 chr9 91944525 91944744 -25917883 + L1MA2 LINE L1 6084 6304 0 203 228 70 18 chr9 91945227 91945284 -25917343 + L2 LINE L2 3209 3268 -4 270 219 44 37 chr9 91945301 91945394 -25917233 + MER5A DNA MER1_type 87 189 0 579 254 11 38 chr9 91945422 91945607 -25917020 + LTR67 LTR ERVL 10 189 -368 550 301 77 19 chr9 91945618 91945983 -25916644 + L1ME LINE L1 5416 5801 -361 792 116 23 23 chr9 91946301 91946430 -25916197 + FRAM SINE Alu 29 157 -19 660 309 69 0 chr9 91946474 91946691 -25915936 + MIR SINE MIR 7 238 -24 226 353 57 71 chr9 91947487 91947770 -25914857 - L2 LINE L2 -5 3267 2989 477 295 23 0 chr9 91948268 91948397 -25914230 - L2 LINE L2 0 3313 3182 2267 101 7 13 chr9 91949495 91949802 -25912825 - AluSx SINE Alu -7 305 1 296 242 32 0 chr9 91950195 91950290 -25912337 - HAL1 LINE L1 -171 2336 2239 364 169 39 0 chr9 91950686 91950763 -25911864 + MIR SINE MIR 168 247 -15 460 250 54 18 chr9 91950791 91950959 -25911668 - MER104 DNA MER2_type -3 177 4 381 262 90 0 chr9 91951148 91951293 -25911334 - HAL1 LINE L1 -726 1781 1624 686 184 0 0 chr9 91951323 91951432 -25911195 - FLAM_C SINE Alu -34 109 1 334 292 119 38 chr9 91951481 91951666 -25910961 - HAL1 LINE L1 -1495 1012 813 2125 86 54 0 chr9 91951667 91951947 -25910680 + AluSp SINE Alu 1 295 -18 479 246 232 0 chr9 91952439 91952577 -25910050 + MER5A DNA MER1_type 15 184 -5 2299 99 3 0 chr9 91952700 91953003 -25909624 - AluSq SINE Alu -9 304 1 2347 74 0 3 chr9 91953440 91953736 -25908891 - AluY SINE Alu -16 295 1 964 203 21 21 chr9 91953963 91954155 -25908472 + AluJ SINE Alu 1 192 -120 1592 171 216 24 chr9 91954169 91954619 -25908008 - LTR10A LTR ERV1 -61 548 13 651 152 0 0 chr9 91954626 91954731 -25907896 + AluJ SINE Alu 188 292 -20 764 268 101 9 chr9 91954733 91954961 -25907666 + MIR SINE MIR 8 256 -6 26 0 0 0 chr9 91955490 91955516 -25907111 + AT_rich Low_complexity Low_complexity 1 26 0 184 0 62 31 chr9 91955915 91955947 -25906680 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 646 184 18 0 chr9 91955949 91956063 -25906564 - FLAM_C SINE Alu -27 116 1 396 0 0 0 chr9 91956192 91956236 -25906391 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1713 194 0 0 chr9 91956244 91956522 -25906105 - AluJo SINE Alu -34 278 1 940 165 193 52 chr9 91956618 91956945 -25905682 - L1MB7 LINE L1 -16 6168 5796 1592 176 23 16 chr9 91957060 91957367 -25905260 + AluJo SINE Alu 1 309 -3 371 256 69 54 chr9 91957367 91957764 -25904863 - L1M4 LINE L1 -4869 1673 1326 725 248 72 29 chr9 91957826 91958104 -25904523 - L1MC4 LINE L1 -142 7900 7611 268 275 51 22 chr9 91960014 91960152 -25902475 - HAL1b LINE L1 -739 609 468 676 289 96 99 chr9 91960175 91960791 -25901836 - HAL1 LINE L1 -970 1537 924 276 188 21 0 chr9 91962055 91962103 -25900524 + MIR SINE MIR 34 82 -180 217 226 0 19 chr9 91962116 91962169 -25900458 + L2 LINE L2 3217 3268 -4 * 234 267 219 0 chr9 91962153 91962299 -25900328 + MIR SINE MIR 75 252 -10 2261 112 0 0 chr9 91962733 91963045 -25899582 + AluSx SINE Alu 1 312 0 2135 112 14 3 chr9 91963704 91963999 -25898628 + AluSq SINE Alu 1 298 -15 255 194 60 45 chr9 91964691 91964758 -25897869 - L2 LINE L2 -5 3267 3200 611 188 0 8 chr9 91965169 91965286 -25897341 - MER92B LTR ERV1 -27 609 494 209 269 19 0 chr9 91965357 91965409 -25897218 + MIR SINE MIR 93 145 -63 809 246 0 18 chr9 91965434 91965605 -25897022 + FAM SINE Alu 1 168 -7 333 333 50 13 chr9 91966164 91966323 -25896304 + L1MEd LINE L1 561 725 -5394 373 310 96 13 chr9 91966515 91966754 -25895873 + L1MEc LINE L1 71 329 -6067 304 217 132 9 chr9 91966802 91966908 -25895719 + L1MEc LINE L1 756 874 -5522 3185 244 63 32 chr9 91966930 91968008 -25894619 + L1MEc LINE L1 65 1345 -5051 1851 158 14 3 chr9 91968008 91968300 -25894327 - AluJo SINE Alu -13 299 5 3185 244 63 32 chr9 91968300 91968861 -25893766 + L1MEc LINE L1 1345 1887 -4509 894 236 43 0 chr9 91968926 91969180 -25893447 + L1MEc LINE L1 1531 1795 -4601 2065 220 66 69 chr9 91969201 91970243 -25892384 + L1MEc LINE L1 1881 2888 -3327 2241 111 0 3 chr9 91970243 91970540 -25892087 - AluSx SINE Alu -16 296 1 2065 220 66 69 chr9 91970540 91970778 -25891849 + L1MEc LINE L1 2888 3125 -3090 1416 147 5 0 chr9 91970806 91971010 -25891617 - AluJo SINE Alu -107 205 1 1848 163 16 7 chr9 91971457 91971763 -25890864 - AluJb SINE Alu -3 309 1 307 372 115 71 chr9 91971773 91972182 -25890445 - L2 LINE L2 -21 3251 2825 402 270 14 54 chr9 91972187 91972335 -25890292 - MLT1H LTR MaLR 0 549 408 2086 118 21 0 chr9 91972467 91972756 -25889871 + AluSx SINE Alu 1 295 -17 640 199 135 6 chr9 91972805 91972961 -25889666 - MLT1H LTR MaLR -355 194 19 557 289 54 82 chr9 91973667 91974152 -25888475 - L1 LINE L1 -1879 4267 3797 1571 200 97 71 chr9 91974388 91974934 -25887693 - LTR38B LTR ERV1 -19 591 28 2307 105 3 3 chr9 91974934 91975239 -25887388 + AluSx SINE Alu 1 305 -7 1571 200 97 71 chr9 91975239 91975268 -25887359 - LTR38B LTR ERV1 -582 28 1 583 299 106 77 chr9 91975603 91975947 -25886680 - L1 LINE L1 -2680 3466 3097 1978 112 38 24 chr9 91975947 91976234 -25886393 - AluSx SINE Alu -21 291 1 583 299 106 77 chr9 91976234 91976464 -25886163 - L1 LINE L1 -3049 3097 2875 2236 125 3 3 chr9 91976686 91976999 -25885628 - AluSq SINE Alu 0 313 1 1102 75 0 0 chr9 91977520 91977654 -25884973 + AluY SINE Alu 1 134 -177 1994 46 0 0 chr9 91977654 91977891 -25884736 + AluY SINE Alu 74 310 -1 21 36 0 0 chr9 91980390 91980418 -25882209 + AT_rich Low_complexity Low_complexity 1 28 0 202 277 0 0 chr9 91981268 91981315 -25881312 + (CA)n Simple_repeat Simple_repeat 2 48 0 2297 87 17 0 chr9 91981356 91981654 -25880973 + AluSq SINE Alu 1 303 -10 219 261 0 0 chr9 91982187 91982233 -25880394 + MIR SINE MIR 209 254 -8 187 288 0 24 chr9 91982933 91982995 -25879632 - MIR SINE MIR -109 99 40 398 294 73 49 chr9 91984157 91984361 -25878266 - MIR SINE MIR -32 230 22 1801 73 73 12 chr9 91984832 91985078 -25877549 - AluSx SINE Alu -17 295 35 410 342 0 0 chr9 91985173 91985293 -25877334 - MIR3 SINE MIR -34 174 55 2372 87 3 0 chr9 91986137 91986436 -25876191 + AluSx SINE Alu 1 300 -12 282 246 131 41 chr9 91986438 91986560 -25876067 + HAL1b LINE L1 378 510 -838 24 0 0 0 chr9 91987743 91987767 -25874860 + AT_rich Low_complexity Low_complexity 1 24 0 2038 101 8 0 chr9 91988682 91988949 -25873678 - AluSq SINE Alu -6 307 39 548 234 7 26 chr9 91989035 91989189 -25873438 + L1MC5 LINE L1 7763 7913 -48 2343 103 0 3 chr9 91990395 91990696 -25871931 - AluSq SINE Alu -13 300 1 456 225 62 0 chr9 91990747 91990876 -25871751 + MER113 DNA MER1_type? 1 137 -384 257 159 0 0 chr9 91990892 91990936 -25871691 + MIR SINE MIR 193 236 -26 1727 179 10 3 chr9 91990959 91991249 -25871378 + AluJb SINE Alu 1 292 -20 2567 65 0 0 chr9 91991257 91991564 -25871063 + AluY SINE Alu 3 309 -2 6990 63 7 0 chr9 91991936 91993291 -25869336 - L1PA11 LINE L1 0 6174 4801 924 201 10 25 chr9 91993308 91993512 -25869115 - MER105 DNA DNA -2 202 2 264 310 86 43 chr9 91993512 91993805 -25868822 + L2 LINE L2 2370 2678 -636 2362 81 0 37 chr9 91994205 91994528 -25868099 - AluY SINE Alu 0 311 1 1959 138 7 7 chr9 91994820 91995116 -25867511 + AluSq SINE Alu 1 296 -17 702 142 58 17 chr9 91995123 91995243 -25867384 + FLAM_A SINE Alu 1 125 -8 325 164 0 60 chr9 91995636 91995703 -25866924 + MER112 DNA MER1_type 2 64 -196 281 245 77 7 chr9 91995717 91995886 -25866741 - L2 LINE L2 -1 3312 3171 1758 149 0 68 chr9 91995893 91996202 -25866425 + AluJo SINE Alu 1 288 -24 384 243 107 71 chr9 91996234 91996403 -25866224 + MER112 DNA MER1_type 86 260 0 983 153 59 64 chr9 91996743 91996945 -25865682 - AluJb SINE Alu -26 286 86 2244 116 7 3 chr9 91998133 91998436 -25864191 - AluSx SINE Alu -8 304 1 194 302 0 0 chr9 91998973 91999026 -25863601 - L3 LINE CR1 -393 1184 1132 2358 64 0 3 chr9 91999442 91999768 -25862859 + AluY SINE Alu 1 325 0 1844 143 0 74 chr9 92000180 92000516 -25862111 + AluJo SINE Alu 1 311 -1 194 213 21 0 chr9 92000519 92000566 -25862061 + L3b LINE CR1 1536 1583 0 973 121 100 104 chr9 92001351 92001591 -25861036 - L1MA9 LINE L1 -13 6299 6061 1686 153 65 0 chr9 92001850 92002125 -25860502 + AluJb SINE Alu 1 293 -19 1209 285 105 9 chr9 92002164 92002725 -25859902 + MLT1L LTR MaLR 1 615 0 547 340 98 38 chr9 92002767 92003369 -25859258 - L2 LINE L2 -687 2627 1956 2227 114 16 3 chr9 92003369 92003677 -25858950 + AluSx SINE Alu 1 312 0 547 340 98 38 chr9 92003677 92003927 -25858700 - L2 LINE L2 -1358 1956 1723 1745 160 20 3 chr9 92003930 92004224 -25858403 - AluJb SINE Alu -12 300 2 1630 159 52 17 chr9 92004398 92004688 -25857939 + AluJo SINE Alu 1 300 -12 1160 209 138 77 chr9 92004791 92005320 -25857307 + MER34B LTR ERV1 4 542 0 2261 85 0 0 chr9 92005434 92005749 -25856878 + AluSx SINE Alu 1 315 0 681 265 122 16 chr9 92006601 92006846 -25855781 + MER102a DNA MER1_type 59 329 -1 234 284 0 0 chr9 92006851 92006918 -25855709 + GA-rich Low_complexity Low_complexity 4 70 0 774 207 0 0 chr9 92007362 92007531 -25855096 + GA-rich Low_complexity Low_complexity 2 170 0 1875 156 0 14 chr9 92007545 92007833 -25854794 - AluJo SINE Alu -28 284 1 3896 196 35 11 chr9 92008145 92008866 -25853761 - MER21B LTR ERV1 -107 756 19 656 114 0 0 chr9 92008878 92008966 -25853661 + AluJo SINE Alu 11 98 -214 423 177 13 0 chr9 92008966 92009045 -25853582 + MER119 DNA MER1_type 419 498 -85 1049 165 16 16 chr9 92009047 92009241 -25853386 + AluJo SINE Alu 103 296 -16 399 284 0 0 chr9 92009271 92009359 -25853268 - MER21B LTR ERV1 -773 90 3 2414 100 0 0 chr9 92009664 92009974 -25852653 + AluY SINE Alu 1 310 -1 21 0 0 0 chr9 92010654 92010675 -25851952 + AT_rich Low_complexity Low_complexity 1 21 0 1646 144 56 46 chr9 92010677 92010982 -25851645 + AluJo SINE Alu 1 308 -4 1927 144 16 7 chr9 92011037 92011342 -25851285 + MER44D DNA MER2_type 32 609 0 2409 220 46 12 chr9 92011499 92012063 -25850564 - MER119 DNA MER1_type 0 583 1 260 67 67 0 chr9 92012158 92012218 -25850409 + (TA)n Simple_repeat Simple_repeat 1 64 0 228 196 54 0 chr9 92012264 92012320 -25850307 + MER116 DNA Mariner 16 74 -6 477 161 0 0 chr9 92012531 92012612 -25850015 + AluJ/FRAM SINE Alu 221 301 -11 1858 110 75 7 chr9 92012686 92012967 -25849660 + AluSq SINE Alu 1 300 -13 1585 159 14 54 chr9 92013416 92013711 -25848916 + AluJo SINE Alu 5 287 -25 186 43 0 0 chr9 92013720 92013743 -25848884 + (CA)n Simple_repeat Simple_repeat 2 24 0 2386 99 0 0 chr9 92014202 92014505 -25848122 - AluSc SINE Alu -4 305 3 295 169 21 71 chr9 92015036 92015081 -25847546 + L1MC3 LINE L1 6689 6735 -1073 808 164 0 15 chr9 92015081 92015215 -25847412 + FLAM_C SINE Alu 1 132 -1 295 169 21 71 chr9 92015215 92015291 -25847336 + L1MC3 LINE L1 6735 6802 -1006 571 131 12 0 chr9 92015301 92015385 -25847242 - AluJ/FLAM SINE Alu -226 86 2 241 234 131 66 chr9 92015412 92015549 -25847078 + L1MC4 LINE L1 6924 7069 -973 2080 159 0 3 chr9 92016471 92016779 -25845848 + AluJb SINE Alu 1 307 -5 21 26 0 26 chr9 92016951 92016963 -25845664 + AT_rich Low_complexity Low_complexity 1 12 -26 1852 164 0 7 chr9 92016963 92017255 -25845372 - AluJb SINE Alu -22 290 1 21 26 0 26 chr9 92017255 92017281 -25845346 + AT_rich Low_complexity Low_complexity 12 38 0 1733 83 0 4 chr9 92017733 92017962 -25844665 + L1M1 LINE L1 5381 5608 -697 1472 161 0 21 chr9 92017962 92018198 -25844429 - AluJo SINE Alu -81 231 1 656 177 44 9 chr9 92018431 92018544 -25844083 - FLAM_C SINE Alu -15 118 2 2162 70 3 90 chr9 92018550 92018883 -25843744 - AluSp SINE Alu 0 306 1 22 0 0 0 chr9 92018885 92018907 -25843720 + AT_rich Low_complexity Low_complexity 1 22 0 209 286 16 32 chr9 92019874 92019937 -25842690 - L2 LINE L2 -218 3054 2993 290 317 170 9 chr9 92019961 92020185 -25842442 - L2 LINE L2 -610 2704 2445 823 132 88 0 chr9 92020205 92020341 -25842286 - MLT1D LTR MaLR 0 505 358 779 163 0 0 chr9 92020342 92020465 -25842162 - AluJb SINE Alu -12 300 178 23 33 0 0 chr9 92020474 92020504 -25842123 + AT_rich Low_complexity Low_complexity 1 30 0 381 301 133 4 chr9 92021029 92021255 -25841372 + MIR SINE MIR 8 262 0 1502 154 62 65 chr9 92022534 92022826 -25839801 + AluJo SINE Alu 1 291 -21 1706 248 138 39 chr9 92023522 92024452 -25838175 + L1ME1 LINE L1 6 1027 -5043 606 201 169 0 chr9 92024455 92024644 -25837983 + L1ME1 LINE L1 1102 1322 -4758 1737 216 102 19 chr9 92024645 92025056 -25837571 + L1ME1 LINE L1 5115 5490 -610 1569 167 17 10 chr9 92025056 92025344 -25837283 + AluJo SINE Alu 1 290 -22 2358 82 24 0 chr9 92025353 92025645 -25836982 + AluSq SINE Alu 1 299 -14 1737 216 102 19 chr9 92025645 92025941 -25836686 + L1ME1 LINE L1 5497 5907 -193 24 67 0 0 chr9 92026336 92026381 -25836246 + AT_rich Low_complexity Low_complexity 1 45 0 3984 79 59 122 chr9 92026417 92026756 -25835871 - Tigger3(Golem) DNA MER2_type -3 3025 2666 510 61 0 0 chr9 92026756 92026822 -25835805 + (CA)n Simple_repeat Simple_repeat 2 67 0 3984 79 59 122 chr9 92026822 92027134 -25835493 - Tigger3(Golem) DNA MER2_type -362 2666 2432 2452 84 3 0 chr9 92027134 92027431 -25835196 + AluSp SINE Alu 1 298 -15 3984 79 59 122 chr9 92027431 92027579 -25835048 - Tigger3(Golem) DNA MER2_type -596 2432 2276 1425 165 41 8 chr9 92027712 92027955 -25834672 + MSTB LTR MaLR 176 426 0 2046 201 27 29 chr9 92027955 92027983 -25834644 + L1MC3 LINE L1 7305 7332 -453 2447 91 0 3 chr9 92027983 92028291 -25834336 + AluSq SINE Alu 1 307 -6 2046 201 27 29 chr9 92028291 92028744 -25833883 + L1MC3 LINE L1 7332 7785 0 2108 118 0 29 chr9 92029358 92029664 -25832963 - AluSx SINE Alu -15 297 1 673 157 102 68 chr9 92030273 92030420 -25832207 - MER106B DNA MER1_type -907 152 1 556 282 165 4 chr9 92030525 92030780 -25831847 - MLT1L LTR MaLR -10 605 310 277 239 56 0 chr9 92030963 92031034 -25831593 + MIR3 SINE MIR 87 161 -47 1931 160 27 0 chr9 92031108 92031402 -25831225 - AluJb SINE Alu -10 302 1 257 0 30 0 chr9 92031426 92031459 -25831168 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1386 262 65 0 chr9 92031483 92031850 -25830777 - L1ME3A LINE L1 -180 5990 5600 2186 124 0 0 chr9 92031863 92032161 -25830466 - AluSq SINE Alu -15 298 1 2432 79 0 16 chr9 92032569 92032885 -25829742 + AluY SINE Alu 1 311 0 875 67 8 25 chr9 92032941 92033061 -25829566 - L1MA3 LINE L1 -2 6303 6186 2466 96 0 0 chr9 92033257 92033569 -25829058 + AluSx SINE Alu 1 312 0 2232 117 3 7 chr9 92033621 92033929 -25828698 + AluSx SINE Alu 6 312 0 452 240 15 105 chr9 92034005 92034205 -25828422 + MER5A DNA MER1_type 1 182 -7 2342 83 0 0 chr9 92035107 92035396 -25827231 + AluSx SINE Alu 21 309 -3 198 0 0 0 chr9 92035775 92035797 -25826830 + (CA)n Simple_repeat Simple_repeat 2 23 0 272 253 0 11 chr9 92035797 92035850 -25826777 - L1MC4 LINE L1 -1347 6695 6642 1977 159 0 3 chr9 92035850 92036145 -25826482 - AluJb SINE Alu -16 296 3 272 253 0 11 chr9 92036145 92036178 -25826449 - L1MC4 LINE L1 -1400 6642 6610 403 256 49 39 chr9 92036281 92036484 -25826143 - MIR SINE MIR -5 257 53 24 0 0 0 chr9 92037907 92037931 -25824696 + GC_rich Low_complexity Low_complexity 1 24 0 195 100 0 0 chr9 92037932 92037962 -25824665 + (TCCC)n Simple_repeat Simple_repeat 1 30 0 34 55 0 0 chr9 92037974 92038029 -25824598 + GC_rich Low_complexity Low_complexity 1 55 0 28 48 0 0 chr9 92038085 92038127 -25824500 + GC_rich Low_complexity Low_complexity 1 42 0 1702 158 43 4 chr9 92039639 92039917 -25822710 + AluJo SINE Alu 1 289 -23 1605 160 248 27 chr9 92040026 92040470 -25822157 - MLT1F LTR MaLR 0 542 1 1752 153 7 0 chr9 92040702 92040989 -25821638 - AluSx SINE Alu -23 289 1 1918 119 18 0 chr9 92041713 92041999 -25820628 - AluSx SINE Alu -8 304 14 723 268 202 23 chr9 92042339 92042902 -25819725 - L2 LINE L2 -1 3312 2669 816 241 28 14 chr9 92042917 92043129 -25819498 - MLT1K LTR MaLR 0 588 374 510 293 150 6 chr9 92043155 92043322 -25819305 - MLT1K LTR MaLR -273 315 125 227 255 20 0 chr9 92043425 92043476 -25819151 - L1ME3A LINE L1 -106 6064 6013 260 330 60 32 chr9 92043573 92043742 -25818885 + L2 LINE L2 582 760 -2554 2236 80 0 49 chr9 92043742 92044067 -25818560 - AluSx SINE Alu -3 309 1 260 330 60 32 chr9 92044067 92044115 -25818512 + L2 LINE L2 760 805 -2509 3541 198 9 23 chr9 92044177 92044955 -25817672 - L1MA9 LINE L1 -38 6274 5508 279 350 129 16 chr9 92045310 92045627 -25817000 + L2 LINE L2 1327 1679 -1635 1495 126 0 0 chr9 92045643 92045858 -25816769 - AluSg/x SINE Alu -19 293 79 951 146 0 0 chr9 92045858 92046002 -25816625 - AluSq/x SINE Alu -168 144 1 789 147 0 0 chr9 92046036 92046152 -25816475 + FLAM_C SINE Alu 2 117 -26 258 32 0 0 chr9 92046157 92046188 -25816439 + (CA)n Simple_repeat Simple_repeat 2 32 0 447 171 0 0 chr9 92046188 92046258 -25816369 + FLAM SINE Alu 60 129 -14 409 329 73 58 chr9 92046287 92046339 -25816288 + L2 LINE L2 1698 1748 -1566 737 173 0 38 chr9 92046339 92046472 -25816155 - FLAM_C SINE Alu -5 128 1 409 329 73 58 chr9 92046472 92046732 -25815895 + L2 LINE L2 1748 2015 -1299 2326 78 0 3 chr9 92046754 92047050 -25815577 + AluSc SINE Alu 1 295 -14 628 289 99 15 chr9 92047060 92047261 -25815366 + MIR SINE MIR 33 250 -12 889 276 134 47 chr9 92047342 92047729 -25814898 - LTR33A LTR ERVL 0 523 103 358 265 138 51 chr9 92047854 92048050 -25814577 + MLT1K LTR MaLR 359 571 -17 2124 99 0 0 chr9 92048462 92048769 -25813858 - AluSx SINE Alu 0 307 1 183 286 71 0 chr9 92049102 92049158 -25813469 + L2 LINE L2 2996 3055 -217 363 333 51 0 chr9 92049673 92049790 -25812837 - L2 LINE L2 -25 3247 3125 377 218 127 18 chr9 92049823 92049933 -25812694 + MIR SINE MIR 72 193 -69 1543 245 31 37 chr9 92049982 92050463 -25812164 - LTR16C LTR ERVL -13 478 1 724 164 8 25 chr9 92050484 92050606 -25812021 - FRAM SINE Alu -23 153 34 784 128 0 101 chr9 92050680 92050828 -25811799 - FLAM_C SINE Alu 0 133 1 2290 81 0 0 chr9 92050875 92051172 -25811455 + AluSc SINE Alu 1 297 -12 875 186 62 16 chr9 92051172 92051366 -25811261 - L1PB4 LINE L1 -5 6151 5949 206 343 126 23 chr9 92051418 92051593 -25811034 - L2 LINE L2 -252 3061 2869 664 185 119 20 chr9 92051696 92051847 -25810780 - FAM SINE Alu -9 166 1 1913 158 17 9 chr9 92052596 92052943 -25809684 - L1MB7 LINE L1 -19 6165 5816 1589 116 87 39 chr9 92052946 92053112 -25809515 - L1MA9 LINE L1 -2 6310 6153 2201 98 3 0 chr9 92053112 92053409 -25809218 - AluSg SINE Alu -12 298 1 1589 116 87 39 chr9 92053409 92053552 -25809075 - L1MA9 LINE L1 -159 6153 5986 642 75 43 0 chr9 92053555 92053649 -25808978 - L1MB7 LINE L1 -345 5829 5732 4241 187 57 11 chr9 92053793 92054889 -25807738 - L1MB2 LINE L1 -36 6135 4987 1816 155 0 31 chr9 92054891 92055208 -25807419 - AluJb SINE Alu -5 307 1 306 293 57 75 chr9 92055273 92055485 -25807142 + L2 LINE L2 2628 2835 -479 473 291 152 6 chr9 92055633 92055791 -25806836 + MER5A DNA MER1_type 9 189 0 412 246 43 150 chr9 92055802 92055956 -25806671 - MER5B DNA MER1_type -4 174 42 2039 94 14 10 chr9 92055956 92056253 -25806374 - AluSg SINE Alu -2 308 11 412 246 43 150 chr9 92056253 92056285 -25806342 - MER5B DNA MER1_type -136 42 8 310 258 11 34 chr9 92056400 92056489 -25806138 + L1MC4a LINE L1 5550 5636 -2172 1524 250 210 20 chr9 92056856 92057461 -25805166 + L2 LINE L2 2007 2726 -588 198 0 0 0 chr9 92057473 92057495 -25805132 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 2013 110 0 3 chr9 92057495 92057777 -25804850 - AluSg SINE Alu -27 283 3 317 307 123 37 chr9 92057884 92058120 -25804507 + L2 LINE L2 2727 2941 -372 2318 53 0 0 chr9 92058120 92058436 -25804191 + AluSc SINE Alu 1 316 0 317 307 123 37 chr9 92058436 92058661 -25803966 + L2 LINE L2 2941 3313 0 337 290 126 13 chr9 92058667 92058905 -25803722 + L1MC4a LINE L1 5669 5933 -1875 451 229 136 22 chr9 92060537 92060713 -25801914 + MIR SINE MIR 9 200 -62 719 159 103 16 chr9 92060794 92060920 -25801707 - FRAM SINE Alu -14 162 26 281 151 208 0 chr9 92061489 92061542 -25801085 - L2 LINE L2 0 3313 3250 474 253 43 62 chr9 92061635 92061892 -25800735 + L1M4 LINE L1 3169 3420 -2726 * 761 194 331 5 chr9 92061890 92062156 -25800471 - L1ME LINE L1 -450 5714 5362 1216 215 24 24 chr9 92062256 92062549 -25800078 - AluSx SINE Alu -9 293 1 2220 92 26 0 chr9 92062553 92062857 -25799770 - AluSp SINE Alu -1 312 1 337 155 83 48 chr9 92062863 92062947 -25799680 - L1ME LINE L1 -869 5277 5191 405 0 0 0 chr9 92062952 92062997 -25799630 + (TG)n Simple_repeat Simple_repeat 2 46 0 363 260 68 20 chr9 92063160 92063306 -25799321 - L1MC4a LINE L1 -1834 5974 5822 395 293 191 73 chr9 92063326 92063776 -25798851 - HAL1 LINE L1 -938 1569 1067 330 303 83 53 chr9 92064498 92064726 -25797901 - HAL1 LINE L1 -2261 246 12 1584 152 3 73 chr9 92064828 92065157 -25797470 - AluJo SINE Alu 0 308 1 189 120 0 140 chr9 92065177 92065227 -25797400 - L2 LINE L2 -10 3262 3220 756 225 149 94 chr9 92065284 92065680 -25796947 - MLT1G1 LTR MaLR 0 595 157 2218 86 3 0 chr9 92065680 92065981 -25796646 - AluSx SINE Alu -10 302 1 756 225 149 94 chr9 92065981 92066148 -25796479 - MLT1G1 LTR MaLR -438 157 1 266 322 111 0 chr9 92066364 92066454 -25796173 - L2 LINE L2 -221 3051 2952 2030 121 7 0 chr9 92066824 92067121 -25795506 + AluSx SINE Alu 1 299 -13 221 304 130 17 chr9 92067185 92067300 -25795327 - MIR SINE MIR -27 235 108 647 143 0 16 chr9 92067693 92067819 -25794808 + L1MB2 LINE L1 6047 6170 -1 403 260 101 52 chr9 92068569 92068886 -25793741 - L1MC4a LINE L1 -678 5484 5117 307 325 0 0 chr9 92068938 92069021 -25793606 + MER58B DNA MER1_type 1 83 -258 1905 125 0 33 chr9 92069048 92069351 -25793276 - AluSx SINE Alu -19 293 1 987 190 107 32 chr9 92069363 92069469 -25793158 + MER58B DNA MER1_type 70 167 -2253 2043 128 3 0 chr9 92069469 92069775 -25792852 - AluSq SINE Alu -6 307 1 987 190 107 32 chr9 92069775 92069921 -25792706 + MER58B DNA MER1_type 167 341 0 455 224 105 86 chr9 92070647 92070857 -25791770 + MIR SINE MIR 31 244 -18 191 355 65 0 chr9 92072119 92072181 -25790446 - MIR SINE MIR -102 106 41 1558 146 0 63 chr9 92072631 92072792 -25789835 - AluJb SINE Alu -19 293 156 2080 124 0 0 chr9 92072792 92073091 -25789536 - AluSx SINE Alu -13 299 1 1558 146 0 63 chr9 92073091 92073216 -25789411 - AluJb SINE Alu -156 156 25 1783 159 0 10 chr9 92073525 92073826 -25788801 - AluJb SINE Alu -14 298 1 804 142 8 30 chr9 92074074 92074208 -25788419 - FLAM_C SINE Alu -2 131 1 1687 117 0 16 chr9 92075206 92075453 -25787174 - AluSx SINE Alu -16 296 54 1990 137 0 0 chr9 92076202 92076501 -25786126 - AluJb SINE Alu -13 299 1 239 198 429 11 chr9 92078089 92078180 -25784447 - MIR SINE MIR -113 149 21 21 0 0 0 chr9 92078268 92078289 -25784338 + AT_rich Low_complexity Low_complexity 1 21 0 217 167 14 56 chr9 92079031 92079103 -25783524 + (CGGGG)n Simple_repeat Simple_repeat 1 69 0 306 0 0 0 chr9 92079266 92079300 -25783327 + (CA)n Simple_repeat Simple_repeat 1 34 0 828 119 8 0 chr9 92079554 92079680 -25782947 - FLAM_C SINE Alu -16 127 1 680 246 251 0 chr9 92080624 92080827 -25781800 + MIR SINE MIR 7 260 -2 1793 127 50 17 chr9 92080893 92081193 -25781434 + AluJo SINE Alu 3 312 0 383 140 0 0 chr9 92081490 92081547 -25781080 - MLT1F1 LTR MaLR 0 567 511 513 246 75 8 chr9 92081548 92081682 -25780945 + MIR SINE MIR 49 191 -71 1864 197 62 31 chr9 92081808 92082229 -25780398 + MLT1F LTR MaLR 56 489 -53 1123 147 0 0 chr9 92082233 92082410 -25780217 - AluSg/x SINE Alu -12 298 122 2097 101 7 3 chr9 92082535 92082831 -25779796 + AluSp SINE Alu 1 297 -16 447 296 119 67 chr9 92082940 92083342 -25779285 - L2 LINE L2 -2575 739 317 1586 145 0 0 chr9 92083396 92083689 -25778938 + AluSx SINE Alu 43 335 0 192 40 0 0 chr9 92083688 92083713 -25778914 + (TTAAA)n Simple_repeat Simple_repeat 1 25 0 642 208 64 0 chr9 92083726 92083851 -25778776 + AluJo SINE Alu 2 134 -178 1482 212 3 10 chr9 92083928 92084221 -25778406 + AluJo SINE Alu 1 291 -11 22 0 0 0 chr9 92084223 92084245 -25778382 + AT_rich Low_complexity Low_complexity 1 22 0 2100 106 3 0 chr9 92084639 92084931 -25777696 + AluSx SINE Alu 1 293 -19 892 160 33 75 chr9 92084977 92085190 -25777437 - MSTD LTR MaLR 0 396 193 320 467 20 4 chr9 92085214 92085390 -25777237 - AluSc SINE Alu 0 299 246 312 107 0 54 chr9 92085392 92085448 -25777179 - MSTC LTR MaLR -375 53 1 7687 198 53 33 chr9 92085448 92085570 -25777057 - MSTD-int LTR MaLR 0 1735 1617 1978 110 4 0 chr9 92085570 92085877 -25776750 + AluSp SINE Alu 1 308 0 7687 198 53 33 chr9 92085877 92087066 -25775561 - MSTD-int LTR MaLR -118 1617 377 2186 102 0 0 chr9 92087066 92087361 -25775266 - AluSq SINE Alu -18 295 1 7687 198 53 33 chr9 92087361 92087746 -25774881 - MSTD-int LTR MaLR -1358 377 1 1381 147 172 75 chr9 92087746 92087796 -25774831 - MSTD LTR MaLR 0 396 352 1895 142 0 7 chr9 92087796 92088098 -25774529 - AluSx SINE Alu -12 300 1 1381 147 172 75 chr9 92088098 92088408 -25774219 - MSTD LTR MaLR -44 352 1 2191 102 3 9 chr9 92088503 92088818 -25773809 + AluSp SINE Alu 1 313 0 1694 215 75 50 chr9 92089062 92089213 -25773414 + MLT1D LTR MaLR 32 178 -327 1960 127 0 23 chr9 92089213 92089520 -25773107 - AluSx SINE Alu -12 300 1 1694 215 75 50 chr9 92089520 92089810 -25772817 + MLT1D LTR MaLR 178 484 -21 1931 149 3 0 chr9 92089834 92090135 -25772492 - AluJb SINE Alu -9 303 2 2063 127 3 29 chr9 92090419 92090727 -25771900 + AluSx SINE Alu 1 300 -12 262 94 0 38 chr9 92090799 92090852 -25771775 + (TA)n Simple_repeat Simple_repeat 1 51 0 1255 221 12 21 chr9 92090893 92091133 -25771494 + MER8 DNA MER2_type 2 239 0 197 292 0 0 chr9 92091157 92091205 -25771422 - L2 LINE L2 -21 3251 3204 24 0 0 0 chr9 92091297 92091321 -25771306 + AT_rich Low_complexity Low_complexity 1 24 0 262 159 23 0 chr9 92091330 92091374 -25771253 - MER57A LTR ERV1 -64 339 295 2072 139 0 10 chr9 92091549 92091859 -25770768 - AluSx SINE Alu -5 307 1 2471 241 55 21 chr9 92092310 92092981 -25769646 + Zaphod DNA AcHobo 1 694 -3337 1854 118 50 27 chr9 92093064 92093361 -25769266 - MER52C LTR ERV1 -3 1275 972 2288 98 0 0 chr9 92093362 92093659 -25768968 + AluSx SINE Alu 16 312 0 860 213 25 113 chr9 92093660 92093899 -25768728 + MLT1B LTR MaLR 157 390 0 1696 201 184 32 chr9 92093903 92093975 -25768652 + Zaphod DNA AcHobo 3419 3479 -552 2021 149 0 7 chr9 92093975 92094283 -25768344 + AluJb SINE Alu 1 306 -6 1696 201 184 32 chr9 92094283 92094742 -25767885 + Zaphod DNA AcHobo 3479 4031 0 2129 135 0 0 chr9 92094984 92095281 -25767346 + AluSx SINE Alu 1 297 -15 2070 97 4 0 chr9 92095672 92095940 -25766687 - AluSx SINE Alu -18 294 26 2377 89 0 3 chr9 92096169 92096471 -25766156 - AluY SINE Alu -10 301 1 245 145 0 65 chr9 92096687 92096749 -25765878 - LTR66 LTR ERVL -173 437 380 415 209 64 85 chr9 92096752 92096892 -25765735 - L1MC4a LINE L1 -302 5819 5788 2360 95 0 0 chr9 92096892 92097196 -25765431 - AluSg SINE Alu -6 304 1 415 209 64 85 chr9 92097196 92097308 -25765319 - L1MC4a LINE L1 -333 5788 5675 2175 128 0 7 chr9 92097320 92097626 -25765001 - AluSc SINE Alu -5 304 1 1279 178 87 4 chr9 92097662 92097892 -25764735 - AluJb SINE Alu -28 284 36 3429 195 123 85 chr9 92097982 92098583 -25764044 + MER69B DNA AcHobo 3 580 -1946 2393 82 0 0 chr9 92098583 92098877 -25763750 - AluY SINE Alu -15 296 3 3429 195 123 85 chr9 92098877 92099353 -25763274 + MER69B DNA AcHobo 580 1129 -1397 1950 164 3 3 chr9 92099353 92099664 -25762963 - AluJo SINE Alu -1 311 1 3429 195 123 85 chr9 92099664 92099737 -25762890 + MER69B DNA AcHobo 1129 1198 -28 2632 30 0 13 chr9 92099877 92100178 -25762449 + AluY SINE Alu 1 297 -14 730 142 0 0 chr9 92100292 92100398 -25762229 + L1MC3 LINE L1 7204 7309 -476 1264 104 6 0 chr9 92100398 92100580 -25762047 + MSTB LTR MaLR 1 183 -243 2089 121 4 0 chr9 92100587 92100867 -25761760 - AluSx SINE Alu -25 287 7 2326 92 3 3 chr9 92100990 92101293 -25761334 - AluSx SINE Alu -9 303 1 2397 67 0 13 chr9 92101730 92102029 -25760598 - AluY SINE Alu -16 295 1 2103 134 0 0 chr9 92102437 92102735 -25759892 + AluSq SINE Alu 1 298 -15 1405 262 65 0 chr9 92102748 92103115 -25759512 + L1ME3A LINE L1 5600 5990 -180 257 0 30 0 chr9 92103139 92103172 -25759455 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1914 160 27 0 chr9 92103196 92103490 -25759137 + AluJb SINE Alu 1 302 -10 26737 46 39 4 chr9 92103699 92107055 -25755572 - L1P LINE L1 -2668 3478 4 2365 94 0 0 chr9 92107062 92107360 -25755267 - AluSq SINE Alu -15 298 1 2332 106 0 0 chr9 92108371 92108664 -25753963 - AluSx SINE Alu -19 293 1 298 289 123 0 chr9 92108668 92108782 -25753845 - MIR SINE MIR -82 180 53 21 57 0 0 chr9 92108890 92108925 -25753702 + AT_rich Low_complexity Low_complexity 1 35 0 1155 170 31 62 chr9 92108940 92109164 -25753463 - MER20 DNA MER1_type 0 219 3 21 36 0 0 chr9 92109542 92109570 -25753057 + AT_rich Low_complexity Low_complexity 1 28 0 209 184 0 0 chr9 92109928 92109966 -25752661 + T-rich Low_complexity Low_complexity 4 41 0 2295 109 0 3 chr9 92110114 92110427 -25752200 - AluSx SINE Alu 0 312 1 322 275 78 7 chr9 92111638 92111780 -25750847 - L1ME4a LINE L1 0 6121 5970 280 244 37 82 chr9 92111793 92111928 -25750699 - L1ME4a LINE L1 -224 5897 5769 679 278 50 6 chr9 92111928 92112108 -25750519 - MIR SINE MIR -44 218 31 2118 108 34 3 chr9 92112144 92112441 -25750186 - AluSx SINE Alu -6 306 1 2130 98 7 0 chr9 92115312 92115606 -25747021 - AluSx SINE Alu 0 305 10 2256 106 0 7 chr9 92115926 92116218 -25746409 + AluSx SINE Alu 1 290 -22 1532 148 7 61 chr9 92116245 92116522 -25746105 + AluJo SINE Alu 3 264 -48 2246 99 7 16 chr9 92116532 92116836 -25745791 - AluSx SINE Alu -11 301 1 22 0 0 0 chr9 92116842 92116864 -25745763 + AT_rich Low_complexity Low_complexity 1 22 0 507 275 18 12 chr9 92116889 92117056 -25745571 - L1ME4a LINE L1 -324 5797 5630 1927 171 0 0 chr9 92117293 92117603 -25745024 - AluJb SINE Alu -2 310 1 535 246 220 7 chr9 92117660 92118062 -25744565 + L1MC4a LINE L1 5366 5818 -303 247 196 62 54 chr9 92118086 92118198 -25744429 + L1ME4a LINE L1 5943 6055 -66 1111 106 0 0 chr9 92118502 92118643 -25743984 - AluSq/x SINE Alu -171 141 1 1781 138 20 30 chr9 92118831 92119128 -25743499 - AluJo SINE Alu -18 294 1 675 36 0 0 chr9 92120384 92120467 -25742160 - AluY SINE Alu 0 310 228 1922 121 0 85 chr9 92121182 92121512 -25741115 - AluSx SINE Alu -10 302 1 2672 187 61 26 chr9 92122041 92122237 -25740390 - L1MC3 LINE L1 0 7785 7597 2246 122 3 0 chr9 92122237 92122548 -25740079 - AluSx SINE Alu 0 312 1 2672 187 61 26 chr9 92122548 92122971 -25739656 - L1MC3 LINE L1 -188 7597 7144 4155 183 57 12 chr9 92123501 92124424 -25738203 - L1MB7 LINE L1 0 6184 5224 225 196 0 0 chr9 92124424 92124470 -25738157 + (TG)n Simple_repeat Simple_repeat 2 47 0 2340 79 0 0 chr9 92124476 92124767 -25737860 - AluY SINE Alu -20 291 1 740 150 0 26 chr9 92124784 92124897 -25737730 - AluJb SINE Alu -26 286 177 1555 133 126 19 chr9 92124925 92125195 -25737432 - AluJo SINE Alu -13 299 1 859 137 47 85 chr9 92125350 92125561 -25737066 - L1MA10 LINE L1 0 6334 6132 1622 201 118 48 chr9 92125631 92126073 -25736554 + MER44D DNA MER2_type 1 528 -77 498 169 0 0 chr9 92126084 92126155 -25736472 + FLAM_A SINE Alu 49 119 -23 774 149 16 0 chr9 92126156 92126277 -25736350 + MER44D DNA MER2_type 483 605 0 758 161 37 24 chr9 92126277 92126444 -25736183 - L1MB1 LINE L1 -69 6099 5941 23 33 0 0 chr9 92126701 92126731 -25735896 + AT_rich Low_complexity Low_complexity 1 30 0 338 120 0 0 chr9 92127430 92127480 -25735147 - L1MC5 LINE L1 -103 7858 7809 1294 183 36 16 chr9 92127526 92127777 -25734850 - MLT1D LTR MaLR -44 461 206 733 184 0 146 chr9 92127785 92127997 -25734630 - L1MB5 LINE L1 -11 6163 5983 1264 193 47 18 chr9 92127997 92128271 -25734356 - L1MB5 LINE L1 -450 5724 5443 1958 147 3 0 chr9 92128287 92128572 -25734055 - AluJo SINE Alu -23 289 4 188 349 0 0 chr9 92128681 92128747 -25733880 - MIR SINE MIR 0 262 197 2312 24 3 0 chr9 92129775 92130064 -25732563 - L1P LINE L1 -2914 3232 2943 * 15453 18 0 0 chr9 92130061 92132455 -25730172 + L1HS LINE L1 3623 6016 -139 962 113 0 0 chr9 92132598 92132739 -25729888 + L1HS LINE L1 6015 6155 0 1963 92 45 57 chr9 92132853 92133167 -25729460 + AluSx SINE Alu 1 310 -2 879 209 234 6 chr9 92133169 92133524 -25729103 + L1MC5 LINE L1 7476 7911 -50 377 79 0 16 chr9 92135063 92135126 -25727501 + (TG)n Simple_repeat Simple_repeat 1 62 0 222 163 93 0 chr9 92135355 92135398 -25727229 + L2 LINE L2 3226 3272 0 196 283 0 0 chr9 92135416 92135462 -25727165 + L2 LINE L2 3221 3266 -6 475 281 205 0 chr9 92135482 92135653 -25726974 + MIR SINE MIR 36 241 -21 207 69 0 0 chr9 92135675 92135704 -25726923 + (CA)n Simple_repeat Simple_repeat 1 29 0 383 313 179 12 chr9 92136092 92136332 -25726295 + L3 LINE CR1 220 499 -1078 195 255 0 0 chr9 92136381 92136417 -25726210 + L2 LINE L2 3223 3261 -11 2194 114 0 3 chr9 92136417 92136716 -25725911 + AluSg SINE Alu 1 298 -12 206 255 0 0 chr9 92137046 92137097 -25725530 + A-rich Low_complexity Low_complexity 1 51 0 699 330 107 24 chr9 92137961 92138143 -25724484 + L1M4 LINE L1 3078 3244 -2902 1850 163 0 7 chr9 92138143 92138450 -25724177 + AluSx SINE Alu 3 307 -5 699 330 107 24 chr9 92138450 92139004 -25723623 + L1M4 LINE L1 3244 3875 -2271 2387 94 3 7 chr9 92139157 92139466 -25723161 + AluSc SINE Alu 1 308 -1 1608 178 46 3 chr9 92139509 92139813 -25722814 + L1MB7 LINE L1 5851 6167 -17 3609 176 36 64 chr9 92140213 92140691 -25721936 - L1MB5 LINE L1 -54 6120 5673 1755 161 0 39 chr9 92140691 92140996 -25721631 - AluSx SINE Alu -19 293 1 3609 176 36 64 chr9 92140996 92141349 -25721278 - L1MB5 LINE L1 -501 5673 5312 25 0 0 0 chr9 92141729 92141754 -25720873 + AT_rich Low_complexity Low_complexity 1 25 0 240 111 0 0 chr9 92141785 92141821 -25720806 + (TTTTC)n Simple_repeat Simple_repeat 4 39 0 1333 108 20 34 chr9 92142369 92142573 -25720054 + AluJo SINE Alu 101 301 -11 639 270 115 5 chr9 92143948 92144148 -25718479 + MIR SINE MIR 41 262 0 2118 152 7 0 chr9 92147933 92148243 -25714384 + AluSx SINE Alu 1 312 0 888 202 33 0 chr9 92148458 92148641 -25713986 + MER3 DNA MER1_type 9 197 -12 2204 109 3 0 chr9 92148818 92149126 -25713501 - AluSq SINE Alu 0 309 1 180 0 0 0 chr9 92149155 92149175 -25713452 + (TC)n Simple_repeat Simple_repeat 1 20 0 * 315 0 0 0 chr9 92149174 92149209 -25713418 + (CA)n Simple_repeat Simple_repeat 1 35 0 1954 133 0 17 chr9 92150094 92150387 -25712240 + AluJo SINE Alu 3 290 -22 230 276 35 0 chr9 92151131 92151189 -25711438 + MIR SINE MIR 88 147 -61 1211 173 71 11 chr9 92151292 92151575 -25711052 - MER33 DNA MER1_type -22 302 3 255 61 0 0 chr9 92151664 92151697 -25710930 + (TA)n Simple_repeat Simple_repeat 1 33 0 749 197 0 7 chr9 92152484 92152621 -25710006 - MER5B DNA MER1_type -42 136 1 2314 120 3 0 chr9 92153127 92153436 -25709191 + AluSg SINE Alu 1 310 0 784 231 75 9 chr9 92153538 92153750 -25708877 - MIR SINE MIR 0 262 37 1042 302 196 36 chr9 92153878 92154715 -25707912 + L2 LINE L2 1752 2453 -860 1959 179 0 0 chr9 92154715 92155027 -25707600 + AluJo SINE Alu 1 312 0 1042 302 196 36 chr9 92155027 92155477 -25707150 + L2 LINE L2 2453 3313 0 1645 209 23 38 chr9 92156405 92156771 -25705856 - LTR26E LTR ERV1 -12 603 177 2349 113 0 0 chr9 92156771 92157073 -25705554 - AluSx SINE Alu -10 302 1 1645 209 23 38 chr9 92157073 92157248 -25705379 - LTR26E LTR ERV1 -438 177 1 259 363 30 7 chr9 92158351 92158486 -25704141 - L2 LINE L2 -12 3260 3123 576 341 59 49 chr9 92158620 92159104 -25703523 - L2 LINE L2 -191 3081 2591 1630 208 10 3 chr9 92159104 92159412 -25703215 + AluJo SINE Alu 1 310 -2 576 341 59 49 chr9 92159412 92159647 -25702980 - L2 LINE L2 -681 2591 2360 588 193 109 0 chr9 92159974 92160093 -25702534 + MER5A DNA MER1_type 19 150 -39 1993 147 17 0 chr9 92160175 92160467 -25702160 - AluSx SINE Alu -15 297 1 194 304 170 0 chr9 92160521 92160656 -25701971 + L2 LINE L2 2249 2406 -908 840 127 40 0 chr9 92160663 92160789 -25701838 - FLAM_C SINE Alu -12 131 1 1851 160 45 0 chr9 92161035 92161322 -25701305 + AluJb SINE Alu 1 300 -12 423 290 117 19 chr9 92161471 92161633 -25700994 - MIR SINE MIR -34 228 51 21 0 0 0 chr9 92162585 92162606 -25700021 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 92165542 92165564 -25697063 + AT_rich Low_complexity Low_complexity 1 22 0 448 270 74 53 chr9 92168874 92169063 -25693564 - MIR SINE MIR -6 256 64 311 57 0 227 chr9 92169608 92169837 -25692790 + (GGA)n Simple_repeat Simple_repeat 1 177 0 455 335 185 16 chr9 92170677 92171044 -25691583 + L2 LINE L2 2877 3305 -8 270 303 0 0 chr9 92171353 92171442 -25691185 - L1MC4 LINE L1 -1339 6703 6615 302 236 0 0 chr9 92171450 92171505 -25691122 - L1MC4 LINE L1 -1340 6702 6648 1617 156 27 8 chr9 92171529 92171792 -25690835 - AluJo SINE Alu -44 268 1 180 70 70 0 chr9 92171873 92171916 -25690711 + (TG)n Simple_repeat Simple_repeat 1 46 0 325 123 53 29 chr9 92171929 92172100 -25690527 + (TG)n Simple_repeat Simple_repeat 1 175 0 220 219 0 0 chr9 92172121 92172162 -25690465 + (TG)n Simple_repeat Simple_repeat 1 41 0 332 220 2 7 chr9 92172199 92172371 -25690256 + Charlie4 DNA MER1_type 1825 1961 0 735 163 133 7 chr9 92174278 92174413 -25688214 + AluJo SINE Alu 2 153 -159 616 160 0 0 chr9 92174414 92174514 -25688113 - AluJ/FLAM SINE Alu -202 100 1 242 254 45 91 chr9 92175073 92175183 -25687444 - L2 LINE L2 -49 3223 3119 344 281 181 44 chr9 92175602 92175762 -25686865 + MIR SINE MIR 31 212 -50 2804 141 2 11 chr9 92175768 92176214 -25686413 + MER83 LTR ERV1 7 448 0 286 105 0 0 chr9 92176219 92176257 -25686370 + L2 LINE L2 3264 3301 -12 833 162 58 11 chr9 92176818 92176888 -25685739 + L1MB2 LINE L1 5296 5361 -822 2335 101 0 7 chr9 92176888 92177195 -25685432 + AluSc SINE Alu 1 305 -4 833 162 58 11 chr9 92177195 92177315 -25685312 + L1MB2 LINE L1 5361 5495 -688 703 118 0 0 chr9 92177328 92177421 -25685206 + AluS SINE Alu 2 94 -218 587 93 0 0 chr9 92177427 92177502 -25685125 + AluSg/x SINE Alu 203 277 -32 3573 143 39 56 chr9 92177502 92178204 -25684423 + L1MB2 LINE L1 5474 6163 -8 1889 170 3 10 chr9 92178592 92178903 -25683724 - AluJo SINE Alu -2 310 2 347 83 0 0 chr9 92179259 92179307 -25683320 + AluSc SINE Alu 221 268 -31 393 95 0 0 chr9 92179314 92179377 -25683250 + (TGGA)n Simple_repeat Simple_repeat 4 66 0 229 193 53 35 chr9 92180527 92180641 -25681986 + (CACAC)n Simple_repeat Simple_repeat 5 120 0 240 270 148 35 chr9 92182189 92182304 -25680323 - MIR SINE MIR -132 130 3 793 201 50 7 chr9 92183139 92183438 -25679189 - L1MA9 LINE L1 -22 6290 5883 263 292 28 0 chr9 92183952 92184024 -25678603 + MIR SINE MIR 92 165 -97 527 223 152 43 chr9 92184323 92184507 -25678120 + MIR SINE MIR 1 204 -58 994 172 10 53 chr9 92184521 92184729 -25677898 + MER2 DNA MER2_type 1 199 -146 234 176 137 0 chr9 92184729 92184780 -25677847 + Tigger4(Zombi) DNA MER2_type 1 58 -2673 900 114 23 0 chr9 92184781 92184913 -25677714 - FAM SINE Alu -16 169 35 1374 206 22 32 chr9 92185155 92185470 -25677157 + LTR8 LTR ERV1 380 691 0 188 216 0 39 chr9 92185508 92185559 -25677068 - MER5C DNA MER1_type -1 323 275 351 170 298 0 chr9 92185695 92185789 -25676838 - MER5C DNA MER1_type -202 122 1 475 243 135 0 chr9 92186880 92187028 -25675599 + MER96 DNA MER1_type? 8 175 0 920 192 20 30 chr9 92187548 92187751 -25674876 + MER3 DNA MER1_type 1 201 -8 277 216 0 0 chr9 92187716 92187767 -25674860 - MER3 DNA MER1_type -119 90 40 * 271 295 83 40 chr9 92188422 92188572 -25674055 - MIR SINE MIR -56 152 27 430 257 111 35 chr9 92189042 92189268 -25673359 - L2 LINE L2 -63 3250 3008 532 249 132 40 chr9 92189387 92189765 -25672862 + L1MC5 LINE L1 7453 7865 -96 1314 263 201 26 chr9 92190785 92191584 -25671043 - HAL1 LINE L1 -1187 1320 382 947 280 99 16 chr9 92191714 92192129 -25670498 - HAL1 LINE L1 -1994 513 57 21 36 0 0 chr9 92192173 92192201 -25670426 + AT_rich Low_complexity Low_complexity 1 28 0 1375 300 89 42 chr9 92192640 92193413 -25669214 + L2 LINE L2 1988 2822 -450 1910 84 48 0 chr9 92193413 92193662 -25668965 + AluSg SINE Alu 38 298 -12 1375 300 89 42 chr9 92193662 92193907 -25668720 + L2 LINE L2 2822 3054 -218 2158 119 3 0 chr9 92195045 92195340 -25667287 + AluSx SINE Alu 1 296 -16 2131 79 61 0 chr9 92196226 92196505 -25666122 + AluY SINE Alu 1 296 -15 2169 104 17 7 chr9 92196509 92196808 -25665819 + AluSg SINE Alu 1 302 -8 229 186 34 34 chr9 92197276 92197335 -25665292 + L1MC5 LINE L1 7855 7913 -48 1158 261 61 59 chr9 92197841 92198401 -25664226 - HAL1 LINE L1 -1002 1505 945 2276 94 10 3 chr9 92199106 92199405 -25663222 + AluY SINE Alu 9 309 -2 2509 73 0 6 chr9 92199513 92199826 -25662801 + AluY SINE Alu 1 311 0 1885 128 0 40 chr9 92201671 92201945 -25660682 + AluSq SINE Alu 1 263 -50 471 18 0 0 chr9 92202404 92202460 -25660167 + (TG)n Simple_repeat Simple_repeat 2 57 0 1046 109 193 15 chr9 92202460 92202662 -25659965 + MER21A LTR ERV1 28 265 -666 2844 176 43 43 chr9 92202666 92203222 -25659405 + MER21A LTR ERV1 376 931 0 664 165 0 9 chr9 92203791 92203900 -25658727 - AluJb SINE Alu -192 120 13 945 152 34 17 chr9 92204076 92204254 -25658373 + L1MB2 LINE L1 5989 6169 -2 261 94 71 0 chr9 92204397 92204482 -25658145 + (TA)n Simple_repeat Simple_repeat 1 91 0 21 0 0 0 chr9 92204489 92204510 -25658117 + AT_rich Low_complexity Low_complexity 1 21 0 198 150 0 0 chr9 92204642 92204682 -25657945 + (TCCA)n Simple_repeat Simple_repeat 3 42 0 1078 203 30 13 chr9 92204940 92205177 -25657450 - Charlie6 DNA MER1_type -205 3295 3055 2248 181 169 7 chr9 92205192 92205299 -25657328 - Charlie6 DNA MER1_type -1775 1725 1637 1694 155 7 51 chr9 92205299 92205595 -25657032 - AluJb SINE Alu -29 283 1 2248 181 169 7 chr9 92205595 92206039 -25656588 - Charlie6 DNA MER1_type -1863 1637 1085 1680 169 10 17 chr9 92206145 92206435 -25656192 + AluJo SINE Alu 1 288 -24 1745 169 41 12 chr9 92206813 92207133 -25655494 + L1MC1 LINE L1 6005 6333 0 284 208 0 0 chr9 92207447 92207500 -25655127 + FLAM SINE Alu 67 119 -14 855 217 36 0 chr9 92207531 92207697 -25654930 + AluJb SINE Alu 137 308 -4 966 156 29 6 chr9 92208533 92208706 -25653921 - FRAM SINE Alu 0 176 1 243 122 61 20 chr9 92208856 92208905 -25653722 - L1ME LINE L1 -245 5876 5826 997 236 37 50 chr9 92209050 92209347 -25653280 - MLT1I LTR MaLR -2 407 115 3350 178 56 25 chr9 92209348 92210174 -25652453 + L1MB7 LINE L1 5141 5994 -190 638 259 125 22 chr9 92210370 92210602 -25652025 + MIR SINE MIR 1 256 -6 344 329 110 0 chr9 92210932 92211087 -25651540 + L3 LINE CR1 1233 1404 -173 717 300 85 41 chr9 92211088 92211769 -25650858 + L2 LINE L2 2575 3272 0 2065 118 33 10 chr9 92212314 92212619 -25650008 + AluSx SINE Alu 1 312 0 990 116 0 27 chr9 92213369 92213516 -25649111 + FLAM_C SINE Alu 1 143 0 222 37 0 0 chr9 92213654 92213681 -25648946 + (TG)n Simple_repeat Simple_repeat 2 28 0 2129 124 3 14 chr9 92214367 92214686 -25647941 + AluSx SINE Alu 1 312 0 306 256 70 0 chr9 92214733 92214801 -25647826 - LTR16A LTR ERVL -6 444 371 3324 171 14 78 chr9 92214801 92215531 -25647096 + LTR8 LTR ERV1 1 683 -8 893 259 84 46 chr9 92215540 92215887 -25646740 - LTR16A LTR ERVL -72 378 19 985 291 114 48 chr9 92216629 92216667 -25645960 + HERVL LTR ERVL 3248 3282 -1714 1202 179 143 29 chr9 92216667 92216975 -25645652 - MER2 DNA MER2_type -1 343 1 985 291 114 48 chr9 92216975 92217391 -25645236 + HERVL LTR ERVL 3282 3480 -1516 2473 153 46 10 chr9 92217391 92217802 -25644825 + MSTB LTR MaLR 1 426 0 985 291 114 48 chr9 92217802 92218031 -25644596 + HERVL LTR ERVL 3480 3693 -1303 630 313 94 33 chr9 92218500 92219273 -25643354 + HERVL LTR ERVL 4534 5344 -310 2481 193 44 48 chr9 92220770 92221081 -25641546 - MER77 LTR ERV1 -6 599 312 1986 159 0 3 chr9 92221081 92221382 -25641245 - AluJo SINE Alu -12 300 1 2481 193 44 48 chr9 92221382 92221641 -25640986 - MER77 LTR ERV1 -293 312 54 271 277 0 15 chr9 92221671 92221736 -25640891 - L2 LINE L2 -52 3261 3198 2073 119 7 17 chr9 92222818 92223142 -25639485 + AluSg SINE Alu 11 310 0 354 200 38 0 chr9 92224614 92224694 -25637933 - L1MB1 LINE L1 -1 6167 6085 255 208 42 0 chr9 92224791 92224863 -25637764 - MER69 DNA AcHobo -908 318 244 286 228 99 105 chr9 92225553 92225715 -25636912 - MLT1H LTR MaLR 0 549 389 438 355 96 25 chr9 92226272 92226742 -25635885 - MERVL LTR ERVL -599 4886 4384 287 250 71 24 chr9 92226807 92226891 -25635736 - MERVL LTR ERVL -1517 4247 4160 428 201 82 15 chr9 92227224 92227358 -25635269 + L1MD1 LINE L1 5978 6120 -122 854 161 7 13 chr9 92227374 92227529 -25635098 + L1MD1 LINE L1 6088 6241 -1 311 357 8 0 chr9 92227918 92228044 -25634583 - MERVL LTR ERVL -2319 3335 3209 306 106 0 0 chr9 92229180 92229227 -25633400 + (TG)n Simple_repeat Simple_repeat 2 48 0 271 269 126 95 chr9 92231046 92231466 -25631161 + L1ME LINE L1 5388 5820 -301 1284 161 19 23 chr9 92231501 92231762 -25630865 - L1MB4 LINE L1 -1 6179 5920 2109 201 9 5 chr9 92232355 92232779 -25629848 - L1MB4 LINE L1 -278 5902 5477 501 280 76 15 chr9 92233698 92233972 -25628655 - L1MC5 LINE L1 -535 7492 7272 29 28 0 0 chr9 92234628 92234664 -25627963 + AT_rich Low_complexity Low_complexity 1 36 0 376 274 198 55 chr9 92235198 92235273 -25627354 - L1MC5 LINE L1 -64 7897 7834 2275 108 3 3 chr9 92235273 92235578 -25627049 - AluSx SINE Alu -7 305 1 376 274 198 55 chr9 92235578 92236028 -25626599 - L1MC5 LINE L1 -127 7834 7297 1194 221 97 82 chr9 92236172 92236694 -25625933 - L1MC4 LINE L1 -734 7227 6723 21 36 0 0 chr9 92238515 92238543 -25624084 + AT_rich Low_complexity Low_complexity 1 28 0 2117 138 0 16 chr9 92238579 92238883 -25623744 - AluSx SINE Alu -13 299 1 1784 176 53 11 chr9 92239076 92239433 -25623194 - MLT1F LTR MaLR -3 539 168 380 232 106 92 chr9 92240208 92240327 -25622300 - L1MC4 LINE L1 -974 7068 6952 2088 78 92 3 chr9 92240327 92240610 -25622017 - AluSq SINE Alu -5 308 1 380 232 106 92 chr9 92240610 92240783 -25621844 - L1MC4 LINE L1 -1090 6952 6772 304 291 24 80 chr9 92241347 92241514 -25621113 + L1MC/D LINE L1 5645 5799 -2009 694 255 120 0 chr9 92241514 92241714 -25620913 - MER58A DNA MER1_type 0 224 1 304 291 24 80 chr9 92241714 92241759 -25620868 + L1MC/D LINE L1 5799 5845 -1963 2199 86 0 45 chr9 92243662 92243975 -25618652 - AluY SINE Alu -12 299 1 912 183 15 50 chr9 92244129 92244331 -25618296 - MER20 DNA MER1_type -24 195 1 198 0 0 0 chr9 92244986 92245008 -25617619 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 673 237 65 6 chr9 92245766 92245935 -25616692 + LTR40a LTR ERVL 339 517 -2 274 228 175 76 chr9 92245936 92246107 -25616520 + HERVL40 LTR ERVL 1 188 -5342 1758 258 69 67 chr9 92246350 92247130 -25615497 + HERVL40 LTR ERVL 1234 1632 -1405 587 264 41 41 chr9 92247302 92247499 -25615128 + HERVL40 LTR ERVL 4448 4644 -886 274 266 138 0 chr9 92248302 92248396 -25614231 + MER66-int LTR ERV1 6151 6257 -419 * 567 223 108 0 chr9 92248359 92248498 -25614129 + HERVL68 LTR ERVL 2822 2975 -62 307 265 133 0 chr9 92248639 92248737 -25613890 + LTR40a LTR ERVL 31 141 -378 462 280 218 10 chr9 92248748 92249055 -25613572 + L2 LINE L2 2254 2624 -690 316 300 23 114 chr9 92249156 92249419 -25613208 - HAL1 LINE L1 -2262 245 7 727 177 0 15 chr9 92249886 92250016 -25612611 + AluJo/FLAM SINE Alu 6 133 -179 1411 206 14 32 chr9 92250019 92250301 -25612326 + AluJo SINE Alu 6 282 -30 536 261 167 0 chr9 92251300 92251522 -25611105 - MIR SINE MIR -1 261 3 694 238 98 114 chr9 92251791 92252177 -25610450 - MLT1I LTR MaLR 0 409 30 1233 133 0 0 chr9 92252214 92252387 -25610240 - AluSq SINE Alu -7 306 134 2406 84 3 7 chr9 92252387 92252696 -25609931 - AluY SINE Alu -3 308 1 578 181 0 0 chr9 92253104 92253198 -25609429 + FLAM_A SINE Alu 1 94 -48 1928 202 139 32 chr9 92253203 92253762 -25608865 + L1ME1 LINE L1 5483 6101 -65 183 241 103 0 chr9 92254851 92254909 -25607718 + MER5B DNA MER1_type 4 67 -111 2469 140 22 12 chr9 92255006 92255413 -25607214 - LTR57 LTR ERVL 0 411 1 442 169 137 24 chr9 92255717 92255841 -25606786 - MIR SINE MIR 0 262 125 2081 132 13 3 chr9 92256706 92257010 -25605617 - AluSx SINE Alu -5 307 1 186 353 109 8 chr9 92257029 92257148 -25605479 - L2 LINE L2 -11 3302 3172 296 345 58 0 chr9 92257215 92257354 -25605273 - L2 LINE L2 -269 3044 2898 2108 141 3 0 chr9 92258042 92258347 -25604280 + AluJb SINE Alu 1 306 -6 1550 177 116 3 chr9 92258377 92258722 -25603905 - MER58D DNA MER1_type -2 384 1 357 245 73 96 chr9 92258749 92258967 -25603660 + L1ME LINE L1 4120 4325 -1821 2381 92 7 0 chr9 92258967 92259271 -25603356 + AluSx SINE Alu 1 306 -6 357 245 73 96 chr9 92259271 92259488 -25603139 + L1ME LINE L1 4325 4545 -1601 270 259 197 50 chr9 92259545 92259865 -25602762 + L1ME LINE L1 4867 5233 -913 690 313 81 26 chr9 92259894 92260313 -25602314 + L1ME LINE L1 5273 5714 -448 2261 80 17 0 chr9 92260407 92260708 -25601919 - L1PA12 LINE L1 -284 5884 5579 1749 54 16 25 chr9 92260708 92260947 -25601680 + L1PA13 LINE L1 5923 6162 -1 1584 197 91 39 chr9 92260949 92261282 -25601345 - L1MEc LINE L1 -4164 2232 1863 1535 188 3 33 chr9 92261282 92261585 -25601042 + AluJo SINE Alu 2 295 -17 1584 197 91 39 chr9 92261585 92261759 -25600868 - L1MEc LINE L1 -4533 1863 1699 1334 219 65 14 chr9 92261760 92262176 -25600451 - L1MEc LINE L1 -5324 1072 556 1060 198 15 20 chr9 92263135 92263332 -25599295 - AluJo SINE Alu -32 280 85 702 183 0 0 chr9 92263332 92263447 -25599180 - AluJo SINE Alu -62 250 136 367 254 63 24 chr9 92263833 92263959 -25598668 + L2 LINE L2 2334 2464 -850 1394 243 213 2 chr9 92264080 92264586 -25598041 - MER90 LTR ERV1 0 575 1 1646 145 25 0 chr9 92264906 92265148 -25597479 + AluSx SINE Alu 52 299 -13 194 91 30 0 chr9 92266683 92266716 -25595911 + (CTCA)n Simple_repeat Simple_repeat 1 34 0 734 151 0 43 chr9 92267652 92267791 -25594836 - AluJo SINE Alu -169 133 1 22 0 0 0 chr9 92268719 92268741 -25593886 + AT_rich Low_complexity Low_complexity 1 22 0 2244 121 0 0 chr9 92269200 92269497 -25593130 - AluSx SINE Alu -15 297 1 513 294 77 13 chr9 92270074 92270143 -25592484 - MIR SINE MIR -12 250 187 390 21 0 0 chr9 92270143 92270190 -25592437 + (CA)n Simple_repeat Simple_repeat 1 47 0 513 294 77 13 chr9 92270190 92270355 -25592272 - MIR SINE MIR -75 187 1 192 229 0 37 chr9 92272086 92272144 -25590483 + MIR SINE MIR 19 71 -137 2259 104 7 0 chr9 92272195 92272494 -25590133 - AluSc SINE Alu -8 301 1 26 0 0 0 chr9 92274186 92274212 -25588415 + AT_rich Low_complexity Low_complexity 1 26 0 295 281 58 25 chr9 92274220 92274341 -25588286 - L2 LINE L2 -5 3267 3143 1869 142 7 35 chr9 92274543 92274853 -25587774 - AluSx SINE Alu -11 301 1 428 139 0 13 chr9 92275185 92275264 -25587363 + L1MA8 LINE L1 6209 6286 -5 553 328 35 0 chr9 92275651 92275852 -25586775 - MIR SINE MIR -49 213 6 2090 108 7 0 chr9 92275999 92276285 -25586342 + AluSq SINE Alu 12 299 -14 1725 158 46 3 chr9 92276451 92276735 -25585892 - AluJb SINE Alu -16 296 1 1219 228 119 18 chr9 92276796 92277182 -25585445 + MER57B LTR ERV1 10 434 0 869 184 55 138 chr9 92277248 92277682 -25584945 - LTR37B LTR ERV1 0 468 71 1053 163 0 0 chr9 92277682 92277842 -25584785 + AluSg/x SINE Alu 137 296 -16 400 330 31 29 chr9 92278283 92278500 -25584127 + MER20B DNA MER1_type 1 219 0 1002 143 128 20 chr9 92278961 92279157 -25583470 - MSTA LTR MaLR 0 428 212 243 146 0 0 chr9 92279449 92279490 -25583137 + (GA)n Simple_repeat Simple_repeat 1 41 0 468 67 0 0 chr9 92279661 92279721 -25582906 - MSTA LTR MaLR -368 60 1 367 309 43 6 chr9 92280166 92280328 -25582299 - L2 LINE L2 -1281 2033 1866 257 232 30 40 chr9 92280822 92280921 -25581706 + L2 LINE L2 2668 2765 -549 1442 225 39 49 chr9 92282564 92282950 -25579677 + L1P3 LINE L1 1102 1483 -4978 4985 80 25 2 chr9 92282973 92283891 -25578736 + L1PA10 LINE L1 4977 5918 -250 544 271 49 7 chr9 92283892 92284036 -25578591 - MLT2E LTR ERVL -468 160 11 348 305 129 41 chr9 92284048 92284295 -25578332 - L2 LINE L2 -255 3058 2768 2405 92 0 0 chr9 92284295 92284600 -25578027 + AluY SINE Alu 1 305 -6 348 305 129 41 chr9 92284600 92284738 -25577889 - L2 LINE L2 -545 2768 2644 1519 191 24 37 chr9 92285196 92285490 -25577137 + AluJo SINE Alu 1 290 -22 2374 156 25 37 chr9 92285512 92285943 -25576684 + MSTB LTR MaLR 1 426 0 23 33 0 0 chr9 92286056 92286086 -25576541 + AT_rich Low_complexity Low_complexity 1 30 0 489 232 35 14 chr9 92286086 92286228 -25576399 + L1ME LINE L1 5423 5567 -597 990 178 156 140 chr9 92286240 92286306 -25576321 + HAL1 LINE L1 1363 1427 -1080 1917 168 3 0 chr9 92286306 92286616 -25576011 + AluSx SINE Alu 1 311 -1 990 178 156 140 chr9 92286616 92287005 -25575622 + HAL1 LINE L1 1427 1825 -682 2177 109 13 13 chr9 92287008 92287312 -25575315 + AluSx SINE Alu 1 304 -8 355 248 128 0 chr9 92287478 92287611 -25575016 - L1M4 LINE L1 -2967 3179 3030 16013 87 14 2 chr9 92287933 92290925 -25571702 + L1PA7 LINE L1 3110 6150 -4 545 173 110 0 chr9 92290928 92291055 -25571572 + L1M4 LINE L1 3871 4011 -2135 1803 311 82 50 chr9 92291081 92291408 -25571219 - ERVL LTR ERVL -751 5013 4698 1778 163 7 0 chr9 92291408 92291685 -25570942 - AluJb SINE Alu -23 289 11 1803 311 82 50 chr9 92291685 92292439 -25570188 - ERVL LTR ERVL -1066 4698 3889 1251 159 62 126 chr9 92292439 92292804 -25569823 - MLT1A1 LTR MaLR 0 365 25 2169 114 10 0 chr9 92292804 92293101 -25569526 - AluSx SINE Alu -12 300 1 1251 159 62 126 chr9 92293101 92293125 -25569502 - MLT1A1 LTR MaLR -340 25 1 1803 311 82 50 chr9 92293125 92293205 -25569422 - ERVL LTR ERVL -1875 3889 3813 1144 243 225 3 chr9 92293209 92293784 -25568843 - Charlie2a DNA MER1_type -2108 754 1 891 220 184 48 chr9 92293950 92294379 -25568248 + MLT1D LTR MaLR 6 487 -18 282 280 27 0 chr9 92294573 92294648 -25567979 + MIR SINE MIR 53 129 -133 1619 157 3 77 chr9 92295016 92295328 -25567299 + AluJb SINE Alu 1 289 -23 317 351 82 18 chr9 92295356 92295527 -25567100 - L1M4 LINE L1 -1168 4978 4797 3738 177 78 10 chr9 92295678 92296778 -25565849 + L1MB7 LINE L1 4861 6047 -137 2076 137 0 3 chr9 92296778 92297071 -25565556 - AluSx SINE Alu -20 292 1 3738 177 78 10 chr9 92297071 92297195 -25565432 + L1MB7 LINE L1 6047 6161 -23 23434 159 38 22 chr9 92297205 92303521 -25559106 - L1PA10 LINE L1 -11 6472 24 460 272 125 17 chr9 92303833 92304065 -25558562 - L1M4 LINE L1 -1888 4258 4002 1334 181 115 58 chr9 92304068 92304467 -25558160 + MLT2B1 LTR ERVL 5 426 -94 436 196 14 27 chr9 92304484 92304632 -25557995 + CT-rich Low_complexity Low_complexity 2 147 0 303 308 86 60 chr9 92305096 92305444 -25557183 - L1M4 LINE L1 -3188 2958 2602 2859 13 0 0 chr9 92305564 92305875 -25556752 + AluY SINE Alu 1 311 0 1255 216 8 0 chr9 92307531 92307776 -25554851 + Tigger7 DNA MER2_type 1 247 -486 442 175 12 0 chr9 92307794 92307874 -25554753 + Tigger7 DNA MER2_type 2407 2487 0 1806 211 70 32 chr9 92308388 92308885 -25553742 - MER21B LTR ERV1 -25 838 323 439 242 60 34 chr9 92308912 92309061 -25553566 - MER21B LTR ERV1 -617 246 94 395 292 0 0 chr9 92309101 92309197 -25553430 - MER21B LTR ERV1 -767 96 1 1233 205 40 0 chr9 92311374 92311671 -25550956 + L1MC3 LINE L1 7469 7777 -8 1495 188 38 57 chr9 92311763 92312135 -25550492 + MLT1A1 LTR MaLR 1 365 0 2012 149 42 17 chr9 92312140 92312495 -25550132 + THE1B LTR MaLR 1 364 0 226 263 53 0 chr9 92312727 92312822 -25549805 + L1MC/D LINE L1 1644 1743 -4797 284 176 0 0 chr9 92312906 92312957 -25549670 + L1MC/D LINE L1 4910 4960 -1580 2138 165 48 33 chr9 92312957 92313417 -25549210 + MLT1C LTR MaLR 1 467 0 1546 212 28 11 chr9 92313444 92313802 -25548825 + MLT1A1 LTR MaLR 2 365 0 540 288 95 18 chr9 92313852 92314616 -25548011 + L1MC/D LINE L1 5118 5938 -748 340 324 7 48 chr9 92314805 92314950 -25547677 + L2 LINE L2 3134 3272 0 1711 156 56 70 chr9 92315161 92315629 -25546998 + MER41B LTR ERV1 100 467 -11 21 0 0 0 chr9 92315944 92315965 -25546662 + AT_rich Low_complexity Low_complexity 1 21 0 2245 110 0 0 chr9 92315968 92316260 -25546367 + AluSg SINE Alu 1 292 -18 418 345 24 12 chr9 92316777 92316945 -25545682 - MIR3 SINE MIR -24 184 15 773 249 99 67 chr9 92317768 92318081 -25544546 - L2 LINE L2 -1717 1597 1275 739 248 39 143 chr9 92318082 92318569 -25544058 + L2 LINE L2 2597 3002 -311 2360 85 0 3 chr9 92318569 92318862 -25543765 - AluSc SINE Alu -17 292 1 739 248 39 143 chr9 92318862 92318990 -25543637 + L2 LINE L2 3002 3142 -171 453 186 59 0 chr9 92318992 92319094 -25543533 + Tigger5 DNA MER2_type 2216 2323 0 544 200 48 55 chr9 92319094 92319239 -25543388 + L2 LINE L2 3169 3312 -1 1067 121 50 0 chr9 92319558 92319756 -25542871 + L1MA8 LINE L1 6084 6291 0 2370 90 3 0 chr9 92319760 92320060 -25542567 + AluSg SINE Alu 1 301 -9 241 231 39 0 chr9 92320719 92320771 -25541856 + MIR3 SINE MIR 7 60 -148 4473 190 63 37 chr9 92322175 92323353 -25539274 - L1MA10 LINE L1 -7 6327 5086 2347 85 0 22 chr9 92323353 92323670 -25538957 - AluSg SINE Alu 0 310 1 4473 190 63 37 chr9 92323670 92324220 -25538407 - L1MA10 LINE L1 -1248 5086 4552 1238 219 37 64 chr9 92324220 92324380 -25538247 + MSTD LTR MaLR 1 164 -232 3813 33 9 0 chr9 92324380 92324832 -25537795 + L1PA5 LINE L1 5690 6145 -9 1238 219 37 64 chr9 92324832 92325078 -25537549 + MSTD LTR MaLR 164 396 0 1138 187 26 64 chr9 92325078 92325421 -25537206 - L1MA10 LINE L1 -1590 4556 4227 2871 144 15 4 chr9 92325422 92325902 -25536725 + Tigger1 DNA MER2_type 3 487 -1931 755 172 16 0 chr9 92325902 92326024 -25536603 + AluJb SINE Alu 1 124 -188 2349 70 0 33 chr9 92326034 92326335 -25536292 - AluY SINE Alu -20 291 1 5167 129 17 8 chr9 92326345 92327206 -25535421 + Tigger1 DNA MER2_type 478 1346 -1072 837 129 89 0 chr9 92327209 92327356 -25535271 + AluSp SINE Alu 150 307 0 3375 106 8 4 chr9 92327359 92327848 -25534779 + L1PA13 LINE L1 5668 6158 -5 1872 271 85 27 chr9 92327848 92327988 -25534639 - L1M4 LINE L1 -1663 5294 5164 1628 170 0 51 chr9 92327988 92328099 -25534528 - AluSx SINE Alu -16 296 181 2346 87 0 0 chr9 92328099 92328386 -25534241 - AluSc SINE Alu -21 288 2 1628 170 0 51 chr9 92328386 92328586 -25534041 - AluSx SINE Alu -131 181 1 1872 271 85 27 chr9 92328586 92329495 -25533132 - L1M4 LINE L1 -1793 5164 4184 1250 283 49 17 chr9 92329612 92330301 -25532326 - L1M4 LINE L1 -2982 3975 3265 294 29 0 0 chr9 92330402 92330437 -25532190 + (TC)n Simple_repeat Simple_repeat 2 36 0 6007 238 71 23 chr9 92330484 92330640 -25531987 - L1M4 LINE L1 -4606 2353 2206 1588 209 17 0 chr9 92330640 92330927 -25531700 - AluJo SINE Alu -20 292 1 6007 238 71 23 chr9 92330927 92331104 -25531523 - L1M4 LINE L1 -4753 2206 2039 1689 130 84 68 chr9 92331104 92331247 -25531380 - THE1C LTR MaLR 0 375 236 2417 114 0 0 chr9 92331247 92331555 -25531072 + AluSg SINE Alu 1 308 -2 1689 130 84 68 chr9 92331555 92331780 -25530847 - THE1C LTR MaLR -139 236 1 6007 238 71 23 chr9 92331780 92333694 -25528933 - L1M4 LINE L1 -4920 2039 10 202 231 167 26 chr9 92335424 92335502 -25527125 + MIR SINE MIR 82 170 -92 1252 220 61 58 chr9 92335516 92335598 -25527029 + MSTD LTR MaLR 1 81 -315 3304 136 4 4 chr9 92335598 92336112 -25526515 - MER75 DNA T2_type 0 514 1 1252 220 61 58 chr9 92336112 92336424 -25526203 + MSTD LTR MaLR 81 396 0 239 277 68 34 chr9 92336805 92336982 -25525645 - MARNA DNA Mariner -390 196 14 32 0 0 0 chr9 92337063 92337095 -25525532 + AT_rich Low_complexity Low_complexity 1 32 0 287 258 105 48 chr9 92337719 92337843 -25524784 + MIR SINE MIR 48 178 -84 1428 204 39 14 chr9 92337886 92338166 -25524461 + AluJo SINE Alu 1 287 -25 8030 35 13 4 chr9 92338493 92340036 -25522591 + L1PA6 LINE L1 4335 5891 -263 510 237 83 55 chr9 92340041 92340394 -25522233 - MSTB2 LTR MaLR -80 377 4 1096 186 20 4 chr9 92340396 92340643 -25521984 + L1MB3 LINE L1 5932 6182 -1 3085 103 14 2 chr9 92340937 92341366 -25521261 - MER57B LTR ERV1 0 434 1 262 378 74 20 chr9 92341515 92341920 -25520707 - L2 LINE L2 -1093 2221 1795 476 240 31 8 chr9 92342062 92342191 -25520436 - L1ME LINE L1 -453 5668 5537 623 274 71 87 chr9 92342213 92342732 -25519895 + MLT1J LTR MaLR 1 511 0 1899 132 15 0 chr9 92342915 92343188 -25519439 + AluJb SINE Alu 11 287 -25 2357 79 16 10 chr9 92343215 92343520 -25519107 + AluSc SINE Alu 1 307 -2 1552 249 18 3 chr9 92343738 92344123 -25518504 - MER93a LTR ERV1 0 402 12 232 359 54 22 chr9 92344201 92344293 -25518334 - L2 LINE L2 -52 3220 3126 1734 157 27 30 chr9 92344472 92344772 -25517855 - AluSx SINE Alu -10 302 4 2300 93 0 6 chr9 92345834 92346145 -25516482 + AluSc SINE Alu 1 309 0 205 83 0 28 chr9 92346245 92346281 -25516346 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 378 0 0 0 chr9 92346444 92346486 -25516141 + (TG)n Simple_repeat Simple_repeat 1 42 0 234 0 0 0 chr9 92346485 92346511 -25516116 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 1976 109 0 0 chr9 92346512 92346787 -25515840 - AluSx SINE Alu -37 275 1 1980 156 15 3 chr9 92346789 92347116 -25515511 - MER41D LTR ERV1 -182 375 45 280 156 0 0 chr9 92347104 92347149 -25515478 - U2 snRNA snRNA -143 45 1 * 437 127 0 0 chr9 92347148 92347211 -25515416 - MER41D LTR ERV1 -494 63 1 326 137 0 0 chr9 92347215 92347266 -25515361 - L1MB7 LINE L1 -35 6149 6099 2010 161 13 30 chr9 92347266 92347600 -25515027 - MER47A DNA MER2_type -1957 366 37 1760 131 0 67 chr9 92347600 92347913 -25514714 + AluSx SINE Alu 1 292 -20 2010 161 13 30 chr9 92347913 92347950 -25514677 - MER47A DNA MER2_type -2286 37 1 1409 187 28 21 chr9 92348431 92348720 -25513907 - AluJo SINE Alu -17 295 5 519 220 16 99 chr9 92348756 92348823 -25513804 + MER5A DNA MER1_type 9 80 -109 1842 93 10 48 chr9 92348823 92349113 -25513514 + AluSq SINE Alu 35 313 0 519 220 16 99 chr9 92349113 92349236 -25513391 + MER5A DNA MER1_type 80 183 -6 203 133 0 0 chr9 92349552 92349582 -25513045 + (TG)n Simple_repeat Simple_repeat 1 30 0 1820 145 0 10 chr9 92349582 92349872 -25512755 - AluSq SINE Alu -26 287 1 186 172 31 62 chr9 92350292 92350356 -25512271 + MIR SINE MIR 67 128 -134 337 309 148 18 chr9 92350494 92350711 -25511916 + MIR SINE MIR 1 245 -17 1443 204 10 3 chr9 92351537 92351850 -25510777 - LTR5 LTR ERVK -654 315 1 966 294 100 27 chr9 92352531 92352906 -25509721 + LTR16A LTR ERVL 1 410 -40 2336 124 26 126 chr9 92352906 92353414 -25509213 + MSTB2 LTR MaLR 1 457 0 966 294 100 27 chr9 92353414 92353449 -25509178 + LTR16A LTR ERVL 410 441 -9 2473 264 69 29 chr9 92353453 92354879 -25507748 - L1ME LINE L1 -3338 2742 1373 1677 186 0 7 chr9 92354879 92355180 -25507447 - AluJb SINE Alu -13 299 1 2473 264 69 29 chr9 92355180 92356313 -25506314 - L1ME LINE L1 -4707 1373 77 381 22 0 0 chr9 92356313 92356359 -25506268 + (TG)n Simple_repeat Simple_repeat 2 47 0 2473 264 69 29 chr9 92356359 92356428 -25506199 - L1ME LINE L1 -6003 77 12 473 261 101 43 chr9 92356442 92356649 -25505978 - L1ME4a LINE L1 -38 6083 5865 1512 186 29 23 chr9 92356739 92357045 -25505582 + AluJb SINE Alu 1 308 -4 294 182 45 30 chr9 92357051 92357117 -25505510 + MLT1J LTR MaLR 109 175 -336 247 256 12 37 chr9 92357435 92357517 -25505110 - L1ME4a LINE L1 -520 5601 5522 564 299 95 41 chr9 92357657 92357995 -25504632 + L2 LINE L2 2958 3313 0 726 211 11 79 chr9 92358108 92358298 -25504329 + MER5A DNA MER1_type 2 178 -11 34 42 0 0 chr9 92359049 92359097 -25503530 + AT_rich Low_complexity Low_complexity 1 48 0 1454 160 85 7 chr9 92359188 92359469 -25503158 - AluSx SINE Alu -9 303 1 334 284 45 45 chr9 92359519 92359674 -25502953 + MER117 DNA MER1_type 6 160 -37 320 262 122 70 chr9 92360074 92360246 -25502381 - L1ME4a LINE L1 -6 6115 5935 446 224 0 10 chr9 92360300 92360398 -25502229 - L1MC4a LINE L1 -1877 5931 5835 366 250 0 80 chr9 92364370 92364470 -25498157 + L1MC4 LINE L1 6614 6705 -1337 315 333 9 0 chr9 92364389 92364494 -25498133 - L1MC4 LINE L1 -1323 6719 6614 * 210 162 0 0 chr9 92364495 92364532 -25498095 + (TA)n Simple_repeat Simple_repeat 2 38 0 2249 80 3 3 chr9 92365066 92365368 -25497259 + AluY SINE Alu 1 302 -9 829 156 15 0 chr9 92365708 92365843 -25496784 + FLAM_C SINE Alu 1 137 -6 941 283 74 30 chr9 92366999 92367335 -25495292 + MLT1I LTR MaLR 59 409 0 1869 153 0 3 chr9 92368341 92368636 -25493991 + AluJb SINE Alu 1 294 -18 397 312 173 36 chr9 92368682 92368863 -25493764 + HAL1 LINE L1 1416 1571 -936 1827 125 53 0 chr9 92368863 92369144 -25493483 + AluSq SINE Alu 1 296 -17 397 312 173 36 chr9 92369144 92369321 -25493306 + HAL1 LINE L1 1571 1823 -684 1651 168 0 59 chr9 92369671 92369993 -25492634 - AluJo SINE Alu -9 303 1 417 292 26 129 chr9 92370258 92370600 -25492027 + L2 LINE L2 189 495 -2819 2869 155 54 23 chr9 92370641 92371163 -25491464 - MER68 LTR ERV1 -22 540 3 5638 298 63 23 chr9 92371163 92373731 -25488896 + L2 LINE L2 601 3271 -42 1648 147 43 83 chr9 92375650 92375743 -25486884 - MLT2B2 LTR ERVL -200 315 220 1638 120 35 14 chr9 92375743 92376027 -25486600 + L1MA2 LINE L1 6014 6303 -1 1648 147 43 83 chr9 92376027 92376260 -25486367 - MLT2B2 LTR ERVL -295 220 2 419 272 0 9 chr9 92376260 92376374 -25486253 + MLT1E3 LTR MaLR 508 620 -4 341 303 0 11 chr9 92376661 92376750 -25485877 - L1MC4 LINE L1 -1339 6703 6616 * 363 337 0 0 chr9 92376672 92376764 -25485863 + L1MC4 LINE L1 6612 6703 -1339 * 411 234 0 43 chr9 92376744 92376838 -25485789 - L1MC4 LINE L1 -1339 6703 6614 279 114 0 0 chr9 92378778 92378822 -25483805 + (TG)n Simple_repeat Simple_repeat 1 44 0 825 324 50 29 chr9 92379665 92380328 -25482299 + L1MA9 LINE L1 5622 6298 -14 342 0 0 0 chr9 92380760 92380798 -25481829 + (CA)n Simple_repeat Simple_repeat 2 39 0 2063 195 33 84 chr9 92381244 92381892 -25480735 - LTR6A LTR ERV1 0 564 1 23 33 0 0 chr9 92382288 92382318 -25480309 + GC_rich Low_complexity Low_complexity 1 30 0 21 71 0 0 chr9 92382420 92382462 -25480165 + GC_rich Low_complexity Low_complexity 1 42 0 264 100 0 0 chr9 92384221 92384261 -25478366 + (TG)n Simple_repeat Simple_repeat 1 40 0 848 318 23 36 chr9 92385106 92385769 -25476858 + L1MA7 LINE L1 5622 6298 -14 405 0 0 0 chr9 92386202 92386247 -25476380 + (CA)n Simple_repeat Simple_repeat 2 46 0 246 105 0 0 chr9 92388270 92388308 -25474319 + (TG)n Simple_repeat Simple_repeat 1 38 0 735 298 34 68 chr9 92389098 92389742 -25472885 + L1MA7 LINE L1 5582 6203 -88 925 271 89 32 chr9 92390185 92390870 -25471757 + L1MA8 LINE L1 5483 6227 -64 201 94 0 0 chr9 92390874 92390906 -25471721 + (TA)n Simple_repeat Simple_repeat 2 33 0 1627 150 3 55 chr9 92391659 92391966 -25470661 + AluJb SINE Alu 1 291 -21 1765 174 47 17 chr9 92391966 92392328 -25470299 + L1MA6 LINE L1 5778 6150 -150 480 171 12 0 chr9 92392328 92392410 -25470217 + FRAM/FAM SINE Alu 1 82 -94 962 171 17 0 chr9 92392414 92392595 -25470032 + L1MA6 LINE L1 6117 6300 0 2730 153 12 28 chr9 92392608 92392740 -25469887 + L1MC1 LINE L1 5845 5978 -355 1551 183 7 10 chr9 92392740 92393046 -25469581 + AluJo SINE Alu 1 305 -7 2730 153 12 28 chr9 92393046 92393409 -25469218 + L1MC1 LINE L1 5978 6332 -1 276 297 52 45 chr9 92393878 92394033 -25468594 + MIR SINE MIR 86 241 -21 4212 115 8 5 chr9 92394427 92395027 -25467600 + LTR43 LTR ERV1 1 602 0 1679 170 88 20 chr9 92395211 92395553 -25467074 - MLT1A1 LTR MaLR 0 365 1 189 121 0 0 chr9 92395587 92395620 -25467007 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 211 200 0 0 chr9 92399081 92399126 -25463501 + (CA)n Simple_repeat Simple_repeat 1 45 0 195 129 0 0 chr9 92399988 92400019 -25462608 + (TAA)n Simple_repeat Simple_repeat 2 32 0 1782 238 90 19 chr9 92400030 92400563 -25462064 - MLT1E2 LTR MaLR 0 626 56 2274 112 3 0 chr9 92400793 92401098 -25461529 + AluY SINE Alu 1 306 -5 436 281 89 15 chr9 92401614 92401817 -25460810 + MLT1J2 LTR MaLR 1 218 -232 219 36 0 0 chr9 92402812 92402840 -25459787 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 207 214 12 119 chr9 92402922 92403006 -25459621 + MER5A DNA MER1_type 109 183 -6 2154 123 3 10 chr9 92403138 92403440 -25459187 - AluSq SINE Alu -13 300 1 197 172 15 88 chr9 92404053 92404130 -25458497 + MIR SINE MIR 58 129 -79 355 309 148 18 chr9 92404271 92404488 -25458139 + MIR SINE MIR 1 245 -17 218 205 0 0 chr9 92404871 92404910 -25457717 + (TG)n Simple_repeat Simple_repeat 2 40 0 1133 223 37 74 chr9 92405601 92405978 -25456649 + MLT1A1 LTR MaLR 2 364 -1 186 43 0 0 chr9 92409383 92409406 -25453221 + (TTTTA)n Simple_repeat Simple_repeat 4 26 0 2166 117 3 0 chr9 92409408 92409699 -25452928 - AluSx SINE Alu -20 292 1 344 151 12 23 chr9 92409699 92409785 -25452842 + MER96B DNA MER1_type? 97 181 -236 605 126 14 154 chr9 92411145 92411288 -25451339 + FLAM_C SINE Alu 3 125 -8 1885 164 5 86 chr9 92512762 92513159 -25349468 + MLT1A1 LTR MaLR 1 365 0 198 0 0 0 chr9 92513636 92513658 -25348969 + (T)n Simple_repeat Simple_repeat 1 22 0 853 219 22 0 chr9 92513759 92513942 -25348685 - MER5A DNA MER1_type -2 187 1 208 214 0 90 chr9 92514682 92514771 -25347856 - MER5B DNA MER1_type 0 178 98 244 221 59 15 chr9 92514914 92514982 -25347645 + L1ME3 LINE L1 5995 6065 -97 303 79 0 0 chr9 92515036 92515074 -25347553 + THE1B LTR MaLR 2 39 -316 2037 145 7 3 chr9 92515187 92515497 -25347130 + THE1B LTR MaLR 54 364 0 202 279 250 0 chr9 92515584 92515688 -25346939 - MER5B DNA MER1_type -48 130 1 2171 124 3 0 chr9 92516126 92516424 -25346203 - AluSx SINE Alu -9 303 5 243 0 0 0 chr9 92517275 92517302 -25345325 + (A)n Simple_repeat Simple_repeat 1 27 0 2198 101 3 17 chr9 92517302 92517590 -25345037 + AluSx SINE Alu 1 284 -28 201 278 71 71 chr9 92517610 92517736 -25344891 + MIR SINE MIR 20 145 -117 2381 123 97 12 chr9 92518055 92518439 -25344188 - MER4C LTR ERV1 -16 449 26 2295 52 72 0 chr9 92518439 92518729 -25343898 - AluY SINE Alu 0 311 1 2381 123 97 12 chr9 92518729 92518758 -25343869 - MER4C LTR ERV1 -439 26 1 1711 122 0 4 chr9 92519164 92519409 -25343218 + AluSg SINE Alu 1 244 -66 962 91 15 8 chr9 92519478 92519610 -25343017 - AluSq/x SINE Alu -179 133 1 1117 104 74 0 chr9 92519611 92519774 -25342853 - MER39B LTR ERV1 -478 175 1 884 160 0 0 chr9 92519842 92519973 -25342654 + FLAM_C SINE Alu 1 131 -12 198 0 0 0 chr9 92520143 92520165 -25342462 + (A)n Simple_repeat Simple_repeat 1 22 0 1753 138 3 32 chr9 92520167 92520479 -25342148 + AluSx SINE Alu 3 305 -7 410 187 22 11 chr9 92520479 92520570 -25342057 - MER113 DNA MER1_type? -117 404 313 205 306 0 0 chr9 92520575 92520624 -25342003 + polypurine Low_complexity Low_complexity 2 50 0 463 266 25 35 chr9 92520625 92520824 -25341803 - MER113 DNA MER1_type? -221 300 104 1945 145 3 20 chr9 92521108 92521449 -25341178 - AluJb SINE Alu 0 312 1 299 266 24 10 chr9 92521805 92521901 -25340726 + MIR SINE MIR 45 149 -59 421 157 0 0 chr9 92521907 92521977 -25340650 + AluSq/x SINE Alu 65 134 -179 1240 178 84 44 chr9 92521982 92522257 -25340370 + AluJb SINE Alu 3 288 -14 234 0 0 0 chr9 92522321 92522347 -25340280 + (TG)n Simple_repeat Simple_repeat 1 26 0 295 138 18 55 chr9 92523365 92523474 -25339153 + (CAGAGA)n Simple_repeat Simple_repeat 4 108 0 257 229 45 56 chr9 92523485 92523664 -25338963 + (CAGAGA)n Simple_repeat Simple_repeat 4 180 0 2219 121 0 3 chr9 92523733 92524039 -25338588 + AluSq SINE Alu 1 305 -8 990 280 47 31 chr9 92524088 92524409 -25338218 - MLT1H LTR MaLR -219 330 5 898 246 73 60 chr9 92524423 92524570 -25338057 - MLT1J LTR MaLR -204 307 163 2335 96 0 0 chr9 92524570 92524861 -25337766 + AluSg SINE Alu 1 291 -19 898 246 73 60 chr9 92524861 92525014 -25337613 - MLT1J LTR MaLR -348 163 3 455 138 64 53 chr9 92525118 92525212 -25337415 + LTR8 LTR ERV1 1 95 -596 763 211 97 26 chr9 92525344 92525571 -25337056 + LTR26 LTR ERV1 361 603 0 582 301 90 12 chr9 92525579 92525901 -25336726 + L2 LINE L2 2596 2942 -372 2235 123 0 7 chr9 92526231 92526533 -25336094 - AluSx SINE Alu -12 300 1 363 291 154 37 chr9 92527403 92527702 -25334925 - MLT1K LTR MaLR -1 587 254 361 301 63 85 chr9 92528984 92529152 -25333475 - LTR67 LTR ERVL -90 467 308 759 174 25 85 chr9 92529152 92529288 -25333339 - MER53 DNA DNA 0 189 67 1706 118 50 105 chr9 92529288 92529611 -25333016 + AluSx SINE Alu 1 305 -7 759 174 25 85 chr9 92529611 92529675 -25332952 - MER53 DNA DNA -122 67 1 361 301 63 85 chr9 92529675 92529825 -25332802 - LTR67 LTR ERVL -249 308 156 321 47 0 0 chr9 92530066 92530109 -25332518 + (TG)n Simple_repeat Simple_repeat 2 44 0 945 98 0 0 chr9 92530150 92530273 -25332354 + AluSq/x SINE Alu 1 123 -190 1496 114 0 27 chr9 92530373 92530592 -25332035 + AluSg/x SINE Alu 96 308 -2 327 242 33 20 chr9 92530611 92530724 -25331903 + MLT1L LTR MaLR 168 283 -305 686 153 0 17 chr9 92530764 92530882 -25331745 + FLAM_C SINE Alu 3 118 -25 308 288 38 30 chr9 92531051 92531183 -25331444 + MLT1L LTR MaLR 479 611 -4 684 281 45 21 chr9 92532140 92532382 -25330245 - MIR SINE MIR -13 249 2 374 277 50 8 chr9 92532940 92533059 -25329568 - L2 LINE L2 -2 3311 3188 2230 119 3 0 chr9 92533158 92533461 -25329166 + AluSx SINE Alu 1 304 -8 235 89 44 0 chr9 92533859 92533904 -25328723 - Alu SINE Alu 0 303 257 679 251 47 17 chr9 92534129 92534364 -25328263 + MIR SINE MIR 11 252 -10 2058 99 0 32 chr9 92534613 92534935 -25327692 - AluSc SINE Alu 0 347 35 2339 82 0 30 chr9 92534952 92535256 -25327371 - AluSq SINE Alu -18 295 1 2110 196 54 14 chr9 92535461 92535905 -25326722 - MLT1C LTR MaLR 0 467 6 223 245 22 24 chr9 92535910 92536001 -25326626 - MIR SINE MIR -63 145 69 378 143 0 0 chr9 92537779 92537842 -25324785 + (TG)n Simple_repeat Simple_repeat 1 63 0 994 174 113 24 chr9 92538403 92538681 -25323946 - MSTD LTR MaLR -43 385 1 201 147 0 0 chr9 92538705 92538739 -25323888 + (GA)n Simple_repeat Simple_repeat 2 35 0 200 140 35 35 chr9 92538744 92538801 -25323826 + (TA)n Simple_repeat Simple_repeat 1 57 0 348 24 0 0 chr9 92538806 92538847 -25323780 + (TG)n Simple_repeat Simple_repeat 2 42 0 421 291 52 0 chr9 92538847 92538981 -25323646 + L1MC/D LINE L1 5625 5765 -2043 238 209 45 0 chr9 92538997 92539064 -25323563 + (TA)n Simple_repeat Simple_repeat 2 71 0 25 0 0 0 chr9 92539066 92539091 -25323536 + AT_rich Low_complexity Low_complexity 1 25 0 2051 125 3 3 chr9 92539093 92539380 -25323247 - AluSx SINE Alu -25 287 1 249 254 0 0 chr9 92539667 92539726 -25322901 + (CATA)n Simple_repeat Simple_repeat 4 62 0 661 298 46 26 chr9 92539790 92539895 -25322732 - L1MC4a LINE L1 -1932 5876 5775 2313 117 0 0 chr9 92539895 92540204 -25322423 + AluSc SINE Alu 1 309 0 661 298 46 26 chr9 92540204 92540403 -25322224 - L1MC4a LINE L1 -2033 5775 5566 448 244 93 21 chr9 92540457 92540687 -25321940 - L1MC4a LINE L1 -782 5364 5209 775 118 8 24 chr9 92541343 92541470 -25321157 - AluSg/x SINE Alu -22 288 164 31 76 0 0 chr9 92541599 92541665 -25320962 + GC_rich Low_complexity Low_complexity 1 66 0 446 274 79 32 chr9 92542214 92542404 -25320223 + MIR SINE MIR 64 262 0 678 287 49 14 chr9 92543320 92543543 -25319084 + MIR SINE MIR 28 258 -4 319 308 77 15 chr9 92543875 92544145 -25318482 - MLT1K LTR MaLR 0 588 240 260 269 55 48 chr9 92544454 92544599 -25318028 - MER5A DNA MER1_type -1 188 43 * 338 272 44 35 chr9 92544504 92544618 -25318009 + MER5A DNA MER1_type 66 180 -9 268 234 39 13 chr9 92544844 92544921 -25317706 - MIR SINE MIR -79 183 105 466 248 0 0 chr9 92545564 92545673 -25316954 + L1ME1 LINE L1 5033 5141 -1005 791 137 29 0 chr9 92545677 92545816 -25316811 + L1MA8 LINE L1 6145 6287 -4 499 245 90 39 chr9 92545908 92546063 -25316564 + MER50 LTR ERV1 1 163 -571 610 211 13 88 chr9 92546229 92546456 -25316171 + L1ME1 LINE L1 5157 5366 -780 661 134 98 0 chr9 92546456 92546568 -25316059 + AluSc SINE Alu 172 294 -15 2629 215 77 60 chr9 92546568 92547358 -25315269 + L1ME1 LINE L1 5358 6161 -5 1824 171 46 155 chr9 92547790 92547895 -25314732 + L1MB7 LINE L1 4066 4181 -1965 1877 119 0 26 chr9 92547895 92548164 -25314463 + AluSx SINE Alu 1 262 -50 1824 171 46 155 chr9 92548164 92548551 -25314076 + L1MB7 LINE L1 4181 4440 -1706 1493 132 118 49 chr9 92548551 92548691 -25313936 + AluJb SINE Alu 3 132 -180 2294 76 7 30 chr9 92548691 92548995 -25313632 + AluSx SINE Alu 1 297 -15 1493 132 118 49 chr9 92548995 92549142 -25313485 + AluJb SINE Alu 132 310 -2 1824 171 46 155 chr9 92549142 92549450 -25313177 + L1MB7 LINE L1 4440 4780 -1366 3139 166 86 69 chr9 92549503 92549943 -25312684 + L1MB7 LINE L1 4764 5195 -989 2144 121 3 22 chr9 92549943 92550257 -25312370 + AluSg SINE Alu 1 308 -2 3139 166 86 69 chr9 92550257 92551099 -25311528 + L1MB7 LINE L1 5195 6066 -118 1625 72 17 191 chr9 92551108 92551453 -25311174 + AluYa5 SINE Alu 21 305 -6 599 174 0 0 chr9 92551785 92551883 -25310744 + AluJ/FLAM SINE Alu 2 99 -213 457 162 0 0 chr9 92551883 92551951 -25310676 - AluJ/FLAM SINE Alu -242 70 3 40 17 0 17 chr9 92552116 92552134 -25310493 + AT_rich Low_complexity Low_complexity 1 18 -39 2275 101 0 0 chr9 92552134 92552421 -25310206 + AluSg SINE Alu 1 287 -23 40 17 0 17 chr9 92552421 92552460 -25310167 + AT_rich Low_complexity Low_complexity 18 57 0 2055 134 0 13 chr9 92552460 92552765 -25309862 + AluSx SINE Alu 1 301 -11 233 293 0 0 chr9 92552910 92552985 -25309642 - MIR SINE MIR -4 258 184 472 217 108 0 chr9 92553065 92553185 -25309442 + L2 LINE L2 3180 3312 -1 1862 152 47 7 chr9 92553220 92553517 -25309110 - AluJb SINE Alu -1 311 3 638 265 156 0 chr9 92553796 92554007 -25308620 - MIR SINE MIR -11 251 8 2931 171 17 33 chr9 92554431 92554841 -25307786 + L1MB5 LINE L1 5594 5994 -180 1877 132 21 0 chr9 92554841 92555121 -25307506 - AluSx SINE Alu -18 294 9 2931 171 17 33 chr9 92555121 92555290 -25307337 + L1MB5 LINE L1 5994 6164 -10 815 279 84 76 chr9 92555925 92556506 -25306121 - MLT1G1 LTR MaLR 0 595 10 239 229 49 0 chr9 92556586 92556647 -25305980 + LTR67 LTR ERVL 486 549 -8 335 253 40 100 chr9 92556769 92556919 -25305708 + MIR SINE MIR 108 248 -14 235 163 0 0 chr9 92556982 92557025 -25305602 - MIR SINE MIR -142 120 78 2332 105 23 0 chr9 92557040 92557393 -25305234 + AluSq SINE Alu 1 360 0 3967 35 0 0 chr9 92557627 92558091 -25304536 - L1PA4 LINE L1 -3 6152 5689 457 114 0 23 chr9 92558281 92558410 -25304217 - MER53 DNA DNA 0 189 5 331 240 173 57 chr9 92558966 92559144 -25303483 + MIR SINE MIR 3 196 -66 497 308 163 26 chr9 92559276 92560092 -25302535 + L2 LINE L2 232 1159 -2155 1284 138 76 47 chr9 92560385 92560660 -25301967 - L1MA9 LINE L1 -3 6309 6027 441 149 0 0 chr9 92560661 92560728 -25301899 + AluJ/FLAM SINE Alu 2 68 -244 980 278 184 30 chr9 92560756 92561438 -25301189 + L2 LINE L2 1842 2417 -896 2446 87 0 0 chr9 92561438 92561738 -25300889 + AluSq SINE Alu 1 300 -13 980 278 184 30 chr9 92561738 92562272 -25300355 + L2 LINE L2 2417 3298 -15 412 244 76 0 chr9 92562377 92562496 -25300131 + MIR SINE MIR 12 139 -123 378 121 0 96 chr9 92563302 92563385 -25299242 + MLT1A1 LTR MaLR 1 75 -290 1771 247 49 44 chr9 92563628 92564195 -25298432 + L1MC4a LINE L1 6451 7020 -788 1039 201 31 85 chr9 92564169 92564487 -25298140 + L1MC4 LINE L1 7241 7541 -501 * 321 151 19 0 chr9 92564489 92564542 -25298085 + L1MC4 LINE L1 7848 7901 -141 224 253 127 0 chr9 92564720 92564799 -25297828 - MER5C DNA MER1_type -6 318 230 380 234 122 0 chr9 92564823 92564930 -25297697 - MER5C DNA MER1_type -200 124 5 186 192 0 0 chr9 92567194 92567246 -25295381 + (CTG)n Simple_repeat Simple_repeat 1 52 0 2229 114 17 0 chr9 92568607 92568905 -25293722 + AluSx SINE Alu 1 303 -9 290 281 79 18 chr9 92570272 92570386 -25292241 - L2 LINE L2 -6 3307 3187 246 191 43 85 chr9 92570814 92570908 -25291719 - MIR SINE MIR -43 219 130 361 131 21 0 chr9 92571008 92571082 -25291545 - Alu SINE Alu -246 54 1 245 217 93 70 chr9 92571807 92571936 -25290691 - MER68 LTR ERV1 -91 471 340 405 225 53 66 chr9 92573036 92573187 -25289440 + MLT1J LTR MaLR 325 473 -38 351 0 0 0 chr9 92573252 92573291 -25289336 + (TG)n Simple_repeat Simple_repeat 2 40 0 2039 100 13 35 chr9 92573501 92573811 -25288816 - AluSx SINE Alu -9 303 1 458 301 126 15 chr9 92574042 92574248 -25288379 + MIR SINE MIR 19 247 -15 502 233 70 47 chr9 92576306 92576478 -25286149 + LTR16A1 LTR ERVL 67 242 -215 225 288 54 18 chr9 92576478 92576564 -25286063 + L2 LINE L2 2780 2872 -442 465 90 0 0 chr9 92576564 92576631 -25285996 + (CA)n Simple_repeat Simple_repeat 2 68 0 225 288 54 18 chr9 92576631 92576655 -25285972 + L2 LINE L2 2872 2894 -420 469 278 17 83 chr9 92578019 92578199 -25284428 - MER91A DNA MER1_type 0 196 29 1855 148 0 31 chr9 92580650 92580941 -25281686 - AluJo SINE Alu -30 282 1 21 95 0 0 chr9 92581078 92581141 -25281486 + AT_rich Low_complexity Low_complexity 1 63 0 468 216 79 29 chr9 92581165 92581304 -25281323 - L2 LINE L2 -1 3312 3167 772 296 47 13 chr9 92581523 92581908 -25280719 - L1ME3A LINE L1 -219 5951 5554 2059 139 3 3 chr9 92582229 92582531 -25280096 - AluSx SINE Alu -10 302 1 692 286 6 0 chr9 92582650 92582832 -25279795 + MIR SINE MIR 6 188 -74 405 0 0 0 chr9 92582985 92583030 -25279597 + (CA)n Simple_repeat Simple_repeat 1 45 0 240 269 194 0 chr9 92583446 92583539 -25279088 + L2 LINE L2 3199 3309 -4 491 183 116 37 chr9 92583832 92583996 -25278631 - MIR SINE MIR 0 262 86 959 183 90 115 chr9 92585646 92585969 -25276658 - MER46C DNA MER2_type -23 315 1 414 221 39 29 chr9 92585997 92586101 -25276526 - MIR SINE MIR -138 124 20 2675 45 0 0 chr9 92587017 92587325 -25275302 - AluY SINE Alu -2 309 2 403 338 30 10 chr9 92587916 92588117 -25274510 - MIR SINE MIR -54 208 4 597 239 6 44 chr9 92588456 92588601 -25274026 + MER5B DNA MER1_type 6 144 -34 1824 166 0 17 chr9 92588601 92588891 -25273736 + AluJb SINE Alu 2 286 -26 597 239 6 44 chr9 92588891 92588925 -25273702 + MER5B DNA MER1_type 144 178 0 2408 94 3 0 chr9 92588987 92589296 -25273331 - AluSg SINE Alu 0 310 1 1395 197 10 47 chr9 92590163 92590463 -25272164 - AluJo SINE Alu -23 289 1 600 250 117 66 chr9 92590926 92591010 -25271617 + L1M4 LINE L1 4815 4893 -1253 604 183 148 0 chr9 92591010 92591125 -25271502 - FLAM_C SINE Alu 0 133 2 600 250 117 66 chr9 92591125 92591499 -25271128 + L1M4 LINE L1 4893 5308 -838 885 128 8 8 chr9 92591499 92591632 -25270995 + FLAM_C SINE Alu 1 133 0 600 250 117 66 chr9 92591632 92591729 -25270898 + L1M4 LINE L1 5308 5399 -747 542 193 72 174 chr9 92591737 92592152 -25270475 - Zaphod DNA AcHobo -1659 2372 2000 249 286 0 16 chr9 92593909 92593997 -25268630 - MIR SINE MIR -86 122 37 221 210 16 0 chr9 92598310 92598372 -25264255 + (TG)n Simple_repeat Simple_repeat 1 63 0 335 278 9 26 chr9 92599797 92599840 -25262787 + (CA)n Simple_repeat Simple_repeat 2 44 -70 1476 163 77 89 chr9 92599840 92600232 -25262395 + MLT1B LTR MaLR 1 387 -3 335 278 9 26 chr9 92600232 92600303 -25262324 + (CA)n Simple_repeat Simple_repeat 44 114 0 1312 153 30 25 chr9 92601089 92601325 -25261302 + AluJb SINE Alu 1 237 -75 25 51 0 0 chr9 92602477 92602516 -25260111 + AT_rich Low_complexity Low_complexity 1 39 0 2511 52 3 10 chr9 92602618 92602928 -25259699 + AluSg SINE Alu 3 310 0 324 270 43 61 chr9 92602933 92603096 -25259531 + L1MEc LINE L1 1581 1740 -4656 * 614 233 98 23 chr9 92603088 92603358 -25259269 + L1MEc LINE L1 2187 2445 -3770 623 269 148 9 chr9 92604409 92604625 -25258002 - MIR SINE MIR -5 257 12 2096 85 38 51 chr9 92605548 92605864 -25256763 - AluSx SINE Alu 0 312 1 404 288 15 0 chr9 92605885 92606017 -25256610 - MIR SINE MIR -27 235 102 5510 136 92 56 chr9 92606087 92607275 -25255352 - Tigger3b DNA MER2_type 0 1231 2 538 279 41 25 chr9 92607394 92607591 -25255036 - Zaphod DNA AcHobo -2492 1539 1340 2135 131 120 24 chr9 92607593 92607976 -25254651 + MSTA LTR MaLR 9 428 0 * 2638 212 86 71 chr9 92607976 92608278 -25254349 - Zaphod DNA AcHobo -2699 1332 1036 1687 184 21 10 chr9 92608278 92608566 -25254061 - AluJb SINE Alu -21 291 1 2638 212 86 71 chr9 92608566 92609219 -25253408 - Zaphod DNA AcHobo -2995 1036 359 2384 96 36 33 chr9 92609219 92609582 -25253045 + THE1B LTR MaLR 1 364 0 2638 212 86 71 chr9 92609582 92609648 -25252979 - Zaphod DNA AcHobo -3672 359 295 256 194 104 0 chr9 92609671 92609738 -25252889 - MLT1G1 LTR MaLR 0 595 522 372 276 73 8 chr9 92609945 92610068 -25252559 - MER5A DNA MER1_type -7 182 52 2323 93 3 3 chr9 92610492 92610792 -25251835 - AluSx SINE Alu -12 300 1 1641 124 136 8 chr9 92610804 92611069 -25251558 - AluSg SINE Alu -1 299 1 2430 89 3 0 chr9 92611070 92611373 -25251254 - AluSp SINE Alu -5 308 5 447 150 0 0 chr9 92611393 92611466 -25251161 - tRNA-Arg-CGA tRNA tRNA -3 73 1 367 146 0 0 chr9 92611472 92611527 -25251100 + MER51A LTR ERV1 580 634 0 2163 115 3 10 chr9 92612676 92612990 -25249637 - AluSq SINE Alu -1 312 1 585 264 81 24 chr9 92612998 92613293 -25249334 + L1M4 LINE L1 4737 5048 -1098 1871 142 187 48 chr9 92613549 92613987 -25248640 - LTR18B LTR ERVL -115 499 1 * 1947 163 80 67 chr9 92613987 92614434 -25248193 + LTR8A LTR ERV1 275 727 0 1081 147 12 0 chr9 92614496 92614659 -25247968 - AluSx SINE Alu -13 297 133 575 157 0 0 chr9 92614659 92614748 -25247879 - AluSx SINE Alu -223 90 2 202 278 218 0 chr9 92614942 92615075 -25247552 + MIR SINE MIR 14 175 -87 1323 223 36 72 chr9 92615098 92615470 -25247157 - HsTC2 DNA Tc2 2 1900 1371 1806 154 27 7 chr9 92615470 92615762 -25246865 - AluJo SINE Alu -14 298 1 1323 223 36 72 chr9 92615762 92615859 -25246768 - HsTC2 DNA Tc2 -527 1371 1272 414 333 25 0 chr9 92615881 92616043 -25246584 - HsTC2 DNA Tc2 -1234 664 499 330 318 104 0 chr9 92616040 92616241 -25246386 - HsTC2 DNA Tc2 -1675 223 2 * 180 111 0 0 chr9 92616736 92616763 -25245864 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 2054 110 4 7 chr9 92616764 92617037 -25245590 + AluSg SINE Alu 1 272 -38 1081 127 0 6 chr9 92617180 92617337 -25245290 - AluSg/x SINE Alu -17 293 138 222 177 16 202 chr9 92617366 92617427 -25245200 + MER5B DNA MER1_type 78 106 -72 2083 130 7 0 chr9 92617427 92617712 -25244915 - AluSx SINE Alu -25 287 1 222 177 16 202 chr9 92617712 92617774 -25244853 + MER5B DNA MER1_type 106 178 0 308 244 259 15 chr9 92617789 92617920 -25244707 - MER5B DNA MER1_type -8 170 8 2910 10 0 0 chr9 92618038 92618347 -25244280 + AluYa5 SINE Alu 1 309 -2 634 125 43 164 chr9 92618732 92618940 -25243687 + MER5A DNA MER1_type 4 186 -3 270 136 0 0 chr9 92620070 92620114 -25242513 + (T)n Simple_repeat Simple_repeat 1 44 0 423 189 76 68 chr9 92620119 92620201 -25242426 - L1MB7 LINE L1 -13 6171 6086 3129 38 0 0 chr9 92620201 92620591 -25242036 + L1PA3 LINE L1 5784 6155 0 423 189 76 68 chr9 92620591 92620640 -25241987 - L1MB7 LINE L1 -98 6086 6039 295 253 81 10 chr9 92620951 92621050 -25241577 + MIR SINE MIR 46 151 -111 444 118 0 0 chr9 92621560 92621628 -25240999 + (A)n Simple_repeat Simple_repeat 1 68 0 224 39 0 0 chr9 92621789 92621815 -25240812 + (T)n Simple_repeat Simple_repeat 1 26 0 215 308 62 84 chr9 92621919 92622107 -25240520 - L2 LINE L2 -1072 2242 2062 2169 136 25 11 chr9 92622107 92622474 -25240153 + L1MB2 LINE L1 5796 6167 -4 215 308 62 84 chr9 92622474 92622607 -25240020 - L2 LINE L2 -1252 2062 1928 228 276 146 22 chr9 92622961 92623117 -25239510 - MIR SINE MIR -48 214 37 2388 64 0 29 chr9 92623758 92624069 -25238558 + AluY SINE Alu 1 302 -9 2085 86 0 11 chr9 92624698 92624966 -25237661 + AluSq SINE Alu 1 265 -48 878 211 18 0 chr9 92625077 92625243 -25237384 + FRAM SINE Alu 1 161 -15 22 0 0 0 chr9 92626911 92626933 -25235694 + AT_rich Low_complexity Low_complexity 1 22 0 387 129 8 220 chr9 92627062 92627129 -25235498 - MLT1D LTR MaLR 0 505 478 752 140 35 0 chr9 92627129 92627243 -25235384 + FLAM_C SINE Alu 2 119 -14 387 129 8 220 chr9 92627243 92627307 -25235320 - MLT1D LTR MaLR -27 478 402 1597 212 35 12 chr9 92627439 92627784 -25234843 + MLT1A2 LTR MaLR 21 373 -1 * 1643 202 100 8 chr9 92627784 92628143 -25234484 - MLT1D LTR MaLR -113 392 1 318 185 18 3 chr9 92628213 92628279 -25234348 - MIR SINE MIR -119 89 24 359 264 21 74 chr9 92628279 92628471 -25234156 - L1ME4a LINE L1 -201 5920 5739 26563 30 3 93 chr9 92628726 92632513 -25230114 + L1P LINE L1 1224 4668 -1478 2056 123 0 3 chr9 92733263 92733563 -25129064 + AluSx SINE Alu 3 301 -11 306 274 268 0 chr9 92734174 92734331 -25128296 + MIR SINE MIR 61 259 -3 228 362 9 17 chr9 92734528 92734644 -25127983 + MIR SINE MIR 92 206 -56 826 122 0 8 chr9 92734697 92734820 -25127807 + FLAM_C SINE Alu 1 122 -21 360 0 0 0 chr9 92734820 92734860 -25127767 + (T)n Simple_repeat Simple_repeat 1 40 0 2136 75 7 0 chr9 92735030 92735312 -25127315 - AluY SINE Alu -27 284 1 35 0 0 0 chr9 92735313 92735348 -25127279 + AT_rich Low_complexity Low_complexity 1 35 0 966 157 6 6 chr9 92735350 92735509 -25127118 + AluJb SINE Alu 134 292 -20 21 71 0 0 chr9 92736175 92736217 -25126410 + AT_rich Low_complexity Low_complexity 1 42 0 803 131 8 0 chr9 92736582 92736704 -25125923 + AluSg/x SINE Alu 177 299 -11 2191 101 0 0 chr9 92738075 92738371 -25124256 - AluSx SINE Alu -16 296 1 2680 219 128 17 chr9 92738526 92739273 -25123354 - L1ME2 LINE L1 -9 6155 5313 574 234 32 6 chr9 92739262 92739420 -25123207 - L1ME2 LINE L1 -1198 4948 4787 * 204 258 161 0 chr9 92739430 92739492 -25123135 + L2 LINE L2 3201 3272 0 2143 123 0 0 chr9 92739572 92739874 -25122753 + AluSx SINE Alu 1 302 -10 1841 138 3 7 chr9 92741565 92741862 -25120765 + AluJb SINE Alu 1 296 -16 719 115 0 0 chr9 92742889 92742985 -25119642 + AluSg/x SINE Alu 191 286 -23 1538 181 10 23 chr9 92743075 92743379 -25119248 - AluJb SINE Alu -12 300 1 340 309 122 8 chr9 92743847 92744040 -25118587 - MIR SINE MIR -3 259 39 599 172 123 0 chr9 92744177 92744212 -25118415 - FLAM_A SINE Alu -174 137 108 1798 91 107 4 chr9 92744212 92744475 -25118152 + AluSq SINE Alu 1 290 -23 599 172 123 0 chr9 92744475 92744561 -25118066 - FLAM_A SINE Alu -203 108 1 317 285 42 73 chr9 92744688 92744853 -25117774 - MER20B DNA MER1_type -608 175 16 1649 163 112 13 chr9 92744897 92745210 -25117417 - MER2 DNA MER2_type 0 344 1 313 183 214 0 chr9 92745310 92745392 -25117235 + MIR SINE MIR 63 162 -46 1210 123 0 0 chr9 92745918 92746089 -25116538 - AluSg/x SINE Alu -14 298 128 243 33 0 0 chr9 92746092 92746122 -25116505 - AluY SINE Alu -267 32 3 214 235 20 0 chr9 92746669 92746720 -25115907 + L2 LINE L2 3221 3272 0 323 228 193 26 chr9 92749428 92749542 -25113085 - MIR3 SINE MIR -39 169 37 791 314 132 27 chr9 92749931 92750638 -25111989 - L2 LINE L2 0 3313 2516 239 333 35 35 chr9 92750686 92750800 -25111827 + MIR SINE MIR 44 157 -105 1555 214 69 0 chr9 92750844 92751162 -25111465 - MER7A DNA MER2_type -5 341 4 910 295 77 18 chr9 92751297 92751789 -25110838 + L1ME4a LINE L1 5582 6102 -19 353 275 143 19 chr9 92752260 92752475 -25110152 + MIR SINE MIR 20 262 0 * 399 284 8 16 chr9 92752469 92752598 -25110029 - MIR SINE MIR -63 145 30 601 226 86 27 chr9 92753242 92753428 -25109199 + MIR SINE MIR 56 252 -10 2169 122 0 0 chr9 92753515 92753855 -25108772 - AluSx SINE Alu 0 340 1 1568 167 40 0 chr9 92753988 92754263 -25108364 - AluJb SINE Alu -22 290 5 605 227 31 76 chr9 92754441 92754583 -25108044 - L1MC4a LINE L1 -1845 5963 5833 2101 81 49 0 chr9 92754583 92754867 -25107760 + AluSx SINE Alu 1 298 -14 605 227 31 76 chr9 92754867 92754949 -25107678 - L1MC4a LINE L1 -1975 5833 5749 2005 83 0 50 chr9 92755550 92755896 -25106731 + AluSg SINE Alu 1 310 0 1480 153 66 28 chr9 92755912 92756200 -25106427 + AluJo SINE Alu 14 312 0 584 144 53 0 chr9 92756216 92756348 -25106279 + GA-rich Low_complexity Low_complexity 2 140 0 321 228 181 16 chr9 92756388 92756515 -25106112 + L1ME4a LINE L1 5969 6116 -5 2207 75 0 0 chr9 92756660 92756940 -25105687 + AluSq SINE Alu 21 300 -13 247 196 22 0 chr9 92757453 92757499 -25105128 + MER5A DNA MER1_type 29 75 -114 2165 125 0 0 chr9 92757499 92757842 -25104785 + AluSx SINE Alu 1 343 0 217 178 22 0 chr9 92757845 92757890 -25104737 + MER5A DNA MER1_type 61 106 -83 781 213 51 15 chr9 92758123 92758320 -25104307 - MER46C DNA MER2_type 0 338 135 2147 114 0 0 chr9 92758374 92758671 -25103956 + AluSg SINE Alu 1 297 -13 370 251 108 91 chr9 92758674 92758905 -25103722 - L1ME4a LINE L1 -74 6047 5813 411 297 45 14 chr9 92759148 92759370 -25103257 - L1ME4a LINE L1 -16 6105 5877 2367 90 0 0 chr9 92759533 92759866 -25102761 - AluSx SINE Alu 0 333 1 290 304 116 43 chr9 92760071 92760311 -25102316 + MIR SINE MIR 2 262 0 1507 235 34 49 chr9 92760433 92760901 -25101726 + L1ME3 LINE L1 5448 5908 -262 653 224 166 109 chr9 92760924 92761429 -25101198 - MLT1H LTR MaLR -15 534 1 317 260 134 39 chr9 92761429 92761660 -25100967 + L1ME3 LINE L1 5904 6156 -6 546 238 146 51 chr9 92761660 92762059 -25100568 - MLT1J LTR MaLR -36 475 5 1924 139 7 0 chr9 92762060 92762347 -25100280 - AluSx SINE Alu -20 292 4 26 82 0 0 chr9 92762526 92762587 -25100040 + AT_rich Low_complexity Low_complexity 1 61 0 491 290 101 6 chr9 92763202 92763371 -25099256 + MIR SINE MIR 20 204 -58 1775 52 43 4 chr9 92763520 92763751 -25098876 + AluY SINE Alu 1 240 -71 1886 139 0 3 chr9 92763851 92764139 -25098488 - AluSx SINE Alu -25 287 1 548 315 86 14 chr9 92764399 92764621 -25098006 - MIR SINE MIR -12 250 13 195 42 0 0 chr9 92764903 92764927 -25097700 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 1883 151 7 0 chr9 92765193 92765485 -25097142 - AluJb SINE Alu -18 294 1 2285 195 9 9 chr9 92765977 92766419 -25096208 + L1MB5 LINE L1 5588 6029 -145 2262 182 25 2 chr9 92766452 92766853 -25095774 + MSTB LTR MaLR 2 411 -15 597 176 129 18 chr9 92766857 92767000 -25095627 + L1MB5 LINE L1 6008 6166 0 2749 13 0 0 chr9 92767109 92767419 -25095208 - AluYb8 SINE Alu -8 310 1 22 0 0 0 chr9 92767421 92767443 -25095184 + AT_rich Low_complexity Low_complexity 1 22 0 344 250 0 0 chr9 92767543 92767611 -25095016 + Charlie1 DNA MER1_type 2 69 -2692 246 203 25 13 chr9 92767655 92767734 -25094893 + CT-rich Low_complexity Low_complexity 3 82 0 1307 165 102 8 chr9 92767735 92767989 -25094638 - AluJb SINE Alu 0 312 35 1056 192 23 8 chr9 92767997 92768257 -25094370 + Charlie1 DNA MER1_type 2381 2644 -117 1901 119 0 60 chr9 92768279 92768597 -25094030 - AluSq SINE Alu -14 299 1 525 144 44 111 chr9 92768600 92768780 -25093847 + Charlie1 DNA MER1_type 2590 2757 -4 225 318 71 0 chr9 92768934 92769019 -25093608 - L2 LINE L2 -1 3271 3181 394 315 23 0 chr9 92769452 92769582 -25093045 + MIR3 SINE MIR 36 168 -40 208 163 0 47 chr9 92769684 92769727 -25092900 + MIR3 SINE MIR 165 205 -3 23 68 0 0 chr9 92770327 92770371 -25092256 + AT_rich Low_complexity Low_complexity 1 44 0 437 167 94 0 chr9 92770906 92771002 -25091625 + MIR SINE MIR 84 188 -74 1058 257 13 0 chr9 92771005 92771094 -25091533 - MIR SINE MIR -21 241 155 1338 102 49 82 chr9 92771094 92771203 -25091424 + MER46A DNA MER2_type 1 112 -2619 2140 123 0 0 chr9 92771203 92771504 -25091123 - AluSx SINE Alu -11 301 1 1338 102 49 82 chr9 92771504 92771638 -25090989 + MER46A DNA MER2_type 112 236 0 1058 257 13 0 chr9 92771638 92771785 -25090842 - MIR SINE MIR -107 155 2 2243 93 3 0 chr9 92772356 92772656 -25089971 - AluSp SINE Alu -12 301 1 278 216 152 45 chr9 92772950 92773110 -25089517 - MIR SINE MIR -70 192 26 347 297 0 10 chr9 92773241 92773342 -25089285 - MIR3 SINE MIR -36 172 73 1931 82 23 36 chr9 92773467 92773773 -25088854 - AluSx SINE Alu -10 302 1 350 293 0 0 chr9 92774556 92774638 -25087989 + L2 LINE L2 3191 3272 0 2237 88 0 0 chr9 92774658 92774953 -25087674 - AluSx SINE Alu -17 295 1 234 322 141 51 chr9 92775095 92775350 -25087277 - L3 LINE CR1 -40 1537 1260 674 313 78 6 chr9 92775506 92775851 -25086776 + L2 LINE L2 2229 2598 -716 742 227 10 15 chr9 92775854 92776105 -25086522 + MLT1H LTR MaLR 1 388 -207 2019 72 0 4 chr9 92776105 92776367 -25086260 - AluSg SINE Alu -46 264 4 423 234 13 0 chr9 92776370 92776447 -25086180 - MER7A DNA MER2_type -269 79 2 321 319 44 114 chr9 92776452 92776682 -25085945 + L2 LINE L2 3014 3224 -48 1251 146 19 0 chr9 92776682 92776887 -25085740 + MER3 DNA MER1_type 1 209 0 321 319 44 114 chr9 92776887 92776929 -25085698 + L2 LINE L2 3224 3267 -5 2005 176 61 5 chr9 92777064 92777439 -25085188 - MSTD LTR MaLR 0 396 1 725 187 0 8 chr9 92778049 92778172 -25084455 + FLAM_C SINE Alu 2 123 -20 2221 97 0 31 chr9 92778178 92778499 -25084128 - AluY SINE Alu 0 311 1 22 35 0 0 chr9 92778505 92778534 -25084093 + AT_rich Low_complexity Low_complexity 1 29 0 802 204 233 16 chr9 92778775 92779084 -25083543 + L2 LINE L2 2937 3312 -1 1225 165 47 19 chr9 92779267 92779697 -25082930 - LTR54 LTR ERV1 -5 505 4 2057 135 0 22 chr9 92779750 92780069 -25082558 - AluSx SINE Alu 0 312 1 213 247 141 24 chr9 92780210 92780295 -25082332 + MER5A DNA MER1_type 57 151 -38 201 204 23 0 chr9 92780501 92780545 -25082082 + L2 LINE L2 2920 2964 -349 2182 108 16 0 chr9 92780721 92781028 -25081599 - AluSx SINE Alu 0 312 1 565 285 50 46 chr9 92781343 92781603 -25081024 - MIR SINE MIR -1 261 1 2153 125 0 0 chr9 92781958 92782270 -25080357 + AluJb SINE Alu 1 312 0 23 0 0 0 chr9 92782630 92782653 -25079974 + AT_rich Low_complexity Low_complexity 1 23 0 321 229 220 0 chr9 92782658 92782767 -25079860 + MIR SINE MIR 33 165 -97 299 232 131 26 chr9 92782780 92782952 -25079675 - MIR SINE MIR -11 251 23 263 288 12 0 chr9 92782984 92783064 -25079563 + MIR SINE MIR 168 248 -14 27 62 0 0 chr9 92783325 92783373 -25079254 + GC_rich Low_complexity Low_complexity 1 48 0 489 209 192 57 chr9 92783666 92783843 -25078784 + MIR SINE MIR 14 214 -48 235 270 104 35 chr9 92784615 92784730 -25077897 - MIR SINE MIR -50 212 90 205 167 71 0 chr9 92785463 92785505 -25077122 + MIR SINE MIR 91 135 -73 21 0 0 0 chr9 92785517 92785538 -25077089 + AT_rich Low_complexity Low_complexity 1 21 0 2048 100 7 27 chr9 92785544 92785845 -25076782 - AluSx SINE Alu -17 295 1 1002 254 193 23 chr9 92785943 92786215 -25076412 - L2 LINE L2 -1 3312 3087 207 0 0 0 chr9 92786215 92786238 -25076389 + (CA)n Simple_repeat Simple_repeat 2 24 0 1002 254 193 23 chr9 92786238 92786769 -25075858 - L2 LINE L2 -226 3087 2358 1733 157 13 16 chr9 92786838 92787150 -25075477 + AluJb SINE Alu 1 311 -1 2302 103 0 0 chr9 92787157 92787467 -25075160 + AluSx SINE Alu 3 312 0 277 262 85 21 chr9 92787475 92787616 -25075011 + L1M4 LINE L1 2346 2495 -3651 821 290 46 20 chr9 92787624 92787969 -25074658 - L2 LINE L2 -2264 1050 697 322 226 27 104 chr9 92788390 92788574 -25074053 - MIR SINE MIR -57 151 16 1442 201 27 3 chr9 92788593 92788891 -25073736 - AluJb SINE Alu -7 305 1 251 257 29 0 chr9 92789040 92789110 -25073517 - MLT1K LTR MaLR -3 585 514 310 255 83 35 chr9 92789252 92789352 -25073275 - L1M4 LINE L1 -1954 4192 4081 2265 87 0 3 chr9 92789352 92789650 -25072977 - AluSq SINE Alu -16 297 1 310 255 83 35 chr9 92789650 92789694 -25072933 - L1M4 LINE L1 -2065 4081 4041 777 239 120 31 chr9 92789695 92789954 -25072673 - L2 LINE L2 -2 3311 3030 * 2747 211 54 50 chr9 92789944 92789957 -25072670 - L2 LINE L2 -611 2703 2692 2147 90 3 7 chr9 92789957 92790256 -25072371 + AluSg SINE Alu 1 298 -12 2747 211 54 50 chr9 92790256 92790977 -25071650 - L2 LINE L2 -622 2692 1966 629 193 44 22 chr9 92790977 92791112 -25071515 - L1MD2 LINE L1 -217 6142 6005 361 275 8 11 chr9 92791173 92791314 -25071313 - L1M4 LINE L1 -2401 3745 3608 838 173 0 0 chr9 92791445 92791584 -25071043 - FRAM SINE Alu -14 162 24 513 0 0 0 chr9 92791621 92791678 -25070949 + (TA)n Simple_repeat Simple_repeat 1 57 0 1881 162 0 3 chr9 92791699 92791995 -25070632 + AluJo SINE Alu 1 295 -17 1831 132 4 0 chr9 92792102 92792374 -25070253 - AluSx SINE Alu -39 273 1 322 264 27 18 chr9 92792375 92792485 -25070142 - L1MEd LINE L1 -6005 114 4 841 192 0 0 chr9 92792688 92792864 -25069763 + FRAM SINE Alu 1 176 0 1020 285 16 0 chr9 92792893 92793135 -25069492 - MIR SINE MIR -15 247 2 341 217 0 0 chr9 92793457 92793517 -25069110 + MIR SINE MIR 30 89 -119 741 174 0 36 chr9 92793563 92793701 -25068926 + FLAM_C SINE Alu 5 137 -6 273 204 61 0 chr9 92793706 92793755 -25068872 - L2 LINE L2 -7 3306 3255 271 295 0 0 chr9 92793777 92793838 -25068789 - tRNA-Gly-GGC tRNA tRNA -6 68 8 186 313 261 8 chr9 92793840 92793974 -25068653 + L3 LINE CR1 1407 1574 -3 425 245 10 10 chr9 92794147 92794249 -25068378 - MER117 DNA MER1_type 0 197 96 3140 112 45 4 chr9 92794662 92795128 -25067499 + MER31A LTR ERV1 1 485 0 352 285 99 96 chr9 92795198 92795510 -25067117 - L2 LINE L2 -22 3250 2938 263 208 122 16 chr9 92795538 92795634 -25066993 - HAL1b LINE L1 -74 1274 1182 610 180 0 0 chr9 92795887 92795987 -25066640 + AluJb SINE Alu 144 243 -69 1007 143 0 7 chr9 92796328 92796482 -25066145 - AluSc SINE Alu -9 300 148 335 173 0 0 chr9 92796485 92796537 -25066090 - AluS SINE Alu -210 92 41 462 235 84 42 chr9 92798449 92798568 -25064059 + MER63 DNA MER1_type 1 750 -312 279 172 156 16 chr9 92798570 92798634 -25063993 + MER63 DNA MER1_type 977 1049 -11 696 226 0 0 chr9 92799124 92799257 -25063370 - AluSg SINE Alu -176 134 2 194 288 131 39 chr9 92799881 92800034 -25062593 - L2 LINE L2 0 3272 3106 360 0 0 0 chr9 92800100 92800140 -25062487 + (TG)n Simple_repeat Simple_repeat 2 41 0 23 0 0 0 chr9 92800987 92801010 -25061617 + AT_rich Low_complexity Low_complexity 1 23 0 1609 191 16 0 chr9 92801090 92801394 -25061233 + AluJb SINE Alu 2 310 -2 2370 86 16 3 chr9 92801529 92801832 -25060795 + AluSx SINE Alu 6 312 0 1789 172 23 13 chr9 92801832 92802134 -25060493 + AluSq SINE Alu 1 305 -8 339 315 55 7 chr9 92802180 92802326 -25060301 - L1MC4a LINE L1 -1944 5864 5712 2121 226 115 38 chr9 92802442 92803239 -25059388 - L1MD3 LINE L1 -2 8040 7196 1758 269 75 24 chr9 92803253 92803725 -25058902 - L1MC4 LINE L1 -955 7087 6566 2310 131 0 0 chr9 92803725 92804030 -25058597 - AluSx SINE Alu -7 305 1 1758 269 75 24 chr9 92804030 92804267 -25058360 - L1MC4 LINE L1 -1476 6566 6342 346 304 9 36 chr9 92805488 92805600 -25057027 + MIR3 SINE MIR 3 111 -97 914 121 0 0 chr9 92805760 92805884 -25056743 - FRAM SINE Alu -16 160 37 639 189 0 0 chr9 92806005 92806111 -25056516 - AluJb SINE Alu -205 107 2 813 158 14 13 chr9 92806113 92806251 -25056376 - L1MB3 LINE L1 -355 5828 5693 405 0 0 0 chr9 92806251 92806296 -25056331 + (TG)n Simple_repeat Simple_repeat 2 46 0 813 158 14 13 chr9 92806296 92806335 -25056292 - L1MB3 LINE L1 -490 5693 5656 2130 125 0 29 chr9 92806366 92806677 -25055950 - AluSx SINE Alu -10 302 1 480 265 123 60 chr9 92806684 92806986 -25055641 - L1MDa LINE L1 -3904 2636 2316 506 319 42 47 chr9 92807095 92807324 -25055303 - HAL1b LINE L1 -488 860 632 2497 84 3 0 chr9 92807324 92807633 -25054994 - AluSp SINE Alu -3 310 1 506 319 42 47 chr9 92807633 92807788 -25054839 - HAL1b LINE L1 -716 632 478 332 282 132 55 chr9 92807803 92807893 -25054734 - HAL1 LINE L1 -1312 1195 1113 1635 181 3 26 chr9 92807893 92808196 -25054431 - AluJo SINE Alu -16 296 1 332 282 132 55 chr9 92808196 92808249 -25054378 - HAL1 LINE L1 -1394 1113 1066 1748 204 3 3 chr9 92808249 92808558 -25054069 - AluJo SINE Alu -3 309 1 332 282 132 55 chr9 92808558 92808686 -25053941 - HAL1 LINE L1 -1441 1066 902 345 174 0 0 chr9 92808837 92808906 -25053721 + (CA)n Simple_repeat Simple_repeat 2 70 0 601 193 18 9 chr9 92809035 92809144 -25053483 - AluJo SINE Alu -135 177 68 1386 164 69 0 chr9 92809144 92809376 -25053251 + AluSx SINE Alu 53 300 -12 533 147 0 0 chr9 92809377 92809452 -25053175 - AluJo SINE Alu -236 76 2 217 234 21 85 chr9 92809875 92809969 -25052658 + L2 LINE L2 3139 3226 -87 1827 96 4 0 chr9 92810781 92811011 -25051616 + AluSp SINE Alu 1 231 -82 413 126 92 143 chr9 92811032 92811114 -25051513 - MER104 DNA Tc2 -1785 113 37 2338 84 3 34 chr9 92811114 92811437 -25051190 + AluSp SINE Alu 1 313 0 413 126 92 143 chr9 92811437 92811473 -25051154 - MER104 DNA Tc2 -1861 37 1 345 327 214 0 chr9 92811932 92812091 -25050536 + L3 LINE CR1 1031 1223 -354 850 245 0 5 chr9 92812120 92812304 -25050323 + MIR SINE MIR 66 248 -14 246 120 20 0 chr9 92812693 92812743 -25049884 - AluJo SINE Alu 0 302 252 1139 151 11 6 chr9 92812743 92812922 -25049705 - AluJo SINE Alu -92 220 41 185 322 34 17 chr9 92813409 92813468 -25049159 + L3b LINE CR1 1510 1569 -14 640 332 17 13 chr9 92814870 92815105 -25047522 - MIR SINE MIR -20 242 7 312 221 117 0 chr9 92815213 92815290 -25047337 + L2 LINE L2 3155 3240 -32 2387 94 0 0 chr9 92816005 92816304 -25046323 - AluSx SINE Alu -13 299 1 2197 104 34 17 chr9 92816775 92817132 -25045495 - L1MB4 LINE L1 0 6180 5818 1101 422 7 10 chr9 92817132 92817433 -25045194 - AluJb SINE Alu -2 300 1 270 315 63 9 chr9 92818067 92818178 -25044449 - L2 LINE L2 0 3272 3156 250 295 88 26 chr9 92818553 92818708 -25043919 + MIR SINE MIR 58 229 -33 * 472 255 176 7 chr9 92818681 92818834 -25043793 - MIR SINE MIR -14 248 70 1337 65 43 21 chr9 92819617 92819803 -25042824 + MER30B DNA MER1_type 1 190 0 310 299 39 0 chr9 92819892 92819969 -25042658 + L2 LINE L2 3234 3313 0 1998 113 0 4 chr9 92820885 92821150 -25041477 + AluSx SINE Alu 41 304 -8 1662 153 27 0 chr9 92821595 92821856 -25040771 - AluJo SINE Alu -10 302 35 554 296 55 32 chr9 92822080 92822300 -25040327 + MIR SINE MIR 5 229 -33 289 272 76 54 chr9 92823840 92823932 -25038695 + MIR SINE MIR 11 104 -158 1844 122 37 65 chr9 92824160 92824481 -25038146 - AluJb SINE Alu 0 312 1 295 218 47 0 chr9 92824485 92824588 -25038039 - L2 LINE L2 -280 3033 2922 467 316 29 6 chr9 92824657 92824828 -25037799 - MIR3 SINE MIR -16 192 18 441 290 19 32 chr9 92825189 92825344 -25037283 - MIR3 SINE MIR -29 179 27 2304 64 61 17 chr9 92825346 92825642 -25036985 - AluSp SINE Alu -4 309 1 2197 72 13 63 chr9 92825645 92825963 -25036664 - AluSg SINE Alu -7 303 2 329 282 7 29 chr9 92826325 92826498 -25036129 + C-rich Low_complexity Low_complexity 1 169 0 195 298 70 0 chr9 92826722 92826836 -25035791 + MIR SINE MIR 31 152 -56 2315 104 10 0 chr9 92826903 92827211 -25035416 - AluSx SINE Alu -1 311 1 1690 85 5 13 chr9 92827238 92827462 -25035165 + AluY SINE Alu 82 303 -8 269 122 0 0 chr9 92827469 92827510 -25035117 - tRNA-Glu-GAG tRNA tRNA -34 41 1 2099 101 18 0 chr9 92827575 92827890 -25034737 + AluSq SINE Alu 1 320 0 1330 134 49 91 chr9 92828191 92828358 -25034269 + MER39B LTR ERV1 288 438 -215 4248 197 25 50 chr9 92828358 92829352 -25033275 - LTR5 LTR ERVK 0 969 1 1330 134 49 91 chr9 92829352 92829491 -25033136 + MER39B LTR ERV1 438 581 -72 721 206 0 15 chr9 92829512 92829643 -25032984 + AluJo/FLAM SINE Alu 1 129 -173 2166 140 0 0 chr9 92829645 92829945 -25032682 + AluSx SINE Alu 1 300 -12 299 312 239 18 chr9 92830000 92830327 -25032300 - L2 LINE L2 -2 3311 2913 720 203 15 11 chr9 92830466 92830749 -25031878 + CT-rich Low_complexity Low_complexity 1 284 0 2334 105 3 0 chr9 92830754 92831058 -25031569 - AluSq SINE Alu -8 305 1 2240 121 3 3 chr9 92831059 92831364 -25031263 - AluSx SINE Alu -7 305 1 307 302 10 10 chr9 92831655 92831751 -25030876 + MIR SINE MIR 48 143 -65 1804 209 72 26 chr9 92831751 92832095 -25030532 - L1ME3A LINE L1 -68 6102 5726 2274 111 3 16 chr9 92832095 92832411 -25030216 - AluSx SINE Alu 0 312 1 1804 209 72 26 chr9 92832411 92832569 -25030058 - L1ME3A LINE L1 -444 5726 5577 1300 129 13 47 chr9 92832569 92832801 -25029826 - AluJo SINE Alu -4 308 85 264 59 0 0 chr9 92832816 92832850 -25029777 + (TTTC)n Simple_repeat Simple_repeat 3 36 0 503 208 38 87 chr9 92832883 92832962 -25029665 - L1ME3A LINE L1 -620 5542 5461 2138 96 20 24 chr9 92832962 92833254 -25029373 - AluSg SINE Alu -19 291 1 503 208 38 87 chr9 92833254 92833357 -25029270 - L1ME3A LINE L1 -701 5461 5369 892 136 0 0 chr9 92833497 92833622 -25029005 - FLAM_C SINE Alu -18 125 1 692 220 54 59 chr9 92833636 92833822 -25028805 + MIR3 SINE MIR 24 208 0 1431 236 108 30 chr9 92833837 92834117 -25028510 + MLT1J LTR MaLR 4 337 -174 1836 166 27 0 chr9 92834117 92834413 -25028214 - AluJb SINE Alu -7 305 2 1431 236 108 30 chr9 92834413 92834603 -25028024 + MLT1J LTR MaLR 337 511 0 2145 121 0 7 chr9 92834621 92834926 -25027701 - AluSq SINE Alu -10 303 1 438 295 86 7 chr9 92834929 92835068 -25027559 - L2 LINE L2 -233 3080 2931 655 304 94 31 chr9 92835101 92835483 -25027144 + MLT1K LTR MaLR 164 569 -19 1403 153 124 69 chr9 92835530 92835876 -25026751 + MER47A DNA MER2_type 1 365 -1 386 220 12 184 chr9 92835924 92836092 -25026535 + MIR SINE MIR 4 142 -120 268 280 237 51 chr9 92836086 92836322 -25026305 + L2 LINE L2 2340 2619 -695 * 526 253 72 139 chr9 92836396 92836937 -25025690 + L2 LINE L2 2804 3308 -5 271 304 78 0 chr9 92837759 92837874 -25024753 + MIR SINE MIR 20 143 -65 396 209 101 54 chr9 92837958 92838087 -25024540 - MIR SINE MIR -64 198 64 2212 98 31 0 chr9 92839333 92839619 -25023008 - AluSx SINE Alu -16 296 2 1957 136 3 7 chr9 92840502 92840788 -25021839 - AluJb SINE Alu -13 299 15 376 364 92 11 chr9 92841130 92841402 -25021225 - L3 LINE CR1 -24 1553 1260 386 256 64 24 chr9 92841718 92841843 -25020784 + MIR SINE MIR 13 142 -120 859 133 0 8 chr9 92841851 92841979 -25020648 - L2 LINE L2 0 3313 3187 416 245 9 19 chr9 92841987 92842093 -25020534 + MIR SINE MIR 158 262 0 2593 56 0 3 chr9 92842114 92842416 -25020211 - AluY SINE Alu -10 301 1 180 0 0 0 chr9 92842688 92842708 -25019919 + (CCCCAA)n Simple_repeat Simple_repeat 1 20 0 369 216 199 51 chr9 92843029 92843205 -25019422 + MER5C DNA MER1_type 21 222 -102 1696 156 15 4 chr9 92843238 92843508 -25019119 - AluJb SINE Alu -9 303 31 1174 127 18 0 chr9 92843611 92843777 -25018850 + FRAM SINE Alu 1 162 -14 240 225 163 0 chr9 92843786 92843866 -25018761 + MER5C DNA MER1_type 232 324 0 315 277 71 50 chr9 92843885 92843997 -25018630 - L1ME4a LINE L1 -4 6117 6000 2291 121 0 9 chr9 92843997 92844312 -25018315 + AluSx SINE Alu 1 312 0 315 277 71 50 chr9 92844312 92844340 -25018287 - L1ME4a LINE L1 -121 6000 5974 198 293 114 71 chr9 92844613 92844753 -25017874 + L2 LINE L2 3122 3267 -5 213 317 20 50 chr9 92844812 92844913 -25017714 - MIR SINE MIR -7 255 158 2065 121 0 59 chr9 92845004 92845139 -25017488 + AluSx SINE Alu 2 143 -169 2300 115 0 6 chr9 92845139 92845452 -25017175 + AluSq SINE Alu 1 311 -2 2065 121 0 59 chr9 92845452 92845638 -25016989 + AluSx SINE Alu 143 304 -8 410 259 107 0 chr9 92846213 92846325 -25016302 - MIR3 SINE MIR -52 156 33 2467 103 0 0 chr9 92846836 92847148 -25015479 - AluSx SINE Alu 0 312 1 287 282 102 10 chr9 92847168 92847282 -25015345 - MIR SINE MIR -76 132 3 266 253 122 34 chr9 92847375 92847566 -25015061 - MIR SINE MIR -10 252 37 319 320 40 69 chr9 92847818 92847993 -25014634 - MIR3 SINE MIR -16 192 23 380 289 137 26 chr9 92848309 92848540 -25014087 + MIR SINE MIR 4 262 0 188 286 164 50 chr9 92848672 92848812 -25013815 - L2 LINE L2 -92 3180 3025 299 314 67 0 chr9 92849169 92849274 -25013353 - L2 LINE L2 -1 3271 3160 330 316 89 0 chr9 92849334 92849492 -25013135 - MIR3 SINE MIR -7 201 30 440 229 191 64 chr9 92849608 92849764 -25012863 + MIR SINE MIR 7 192 -70 2506 71 3 0 chr9 92849764 92850072 -25012555 + AluSp SINE Alu 1 309 -4 440 229 191 64 chr9 92850072 92850103 -25012524 + MIR SINE MIR 192 218 -44 2402 72 0 3 chr9 92851372 92851664 -25010963 + AluSx SINE Alu 1 291 -21 1120 203 45 66 chr9 92852270 92852458 -25010169 + L1ME3A LINE L1 5826 6005 -165 2240 121 6 10 chr9 92852458 92852771 -25009856 + AluJb SINE Alu 1 312 0 1120 203 45 66 chr9 92852771 92852933 -25009694 + L1ME3A LINE L1 6005 6169 -1 843 138 0 0 chr9 92853037 92853167 -25009460 + L1MB5 LINE L1 6045 6174 0 422 178 0 0 chr9 92853175 92853248 -25009379 + L1MD3 LINE L1 7729 7801 -194 314 240 62 31 chr9 92853300 92853396 -25009231 + MIR3 SINE MIR 58 156 -52 2247 80 25 0 chr9 92853617 92853903 -25008724 - AluSg SINE Alu -17 293 1 2233 110 0 0 chr9 92854416 92854715 -25007912 + AluSx SINE Alu 1 299 -13 2009 106 11 21 chr9 92854718 92855002 -25007625 + AluSx SINE Alu 19 299 -13 180 198 117 108 chr9 92855046 92855097 -25007530 + MIR SINE MIR 139 188 -74 800 145 30 15 chr9 92855097 92855228 -25007399 + FLAM_C SINE Alu 1 133 0 2330 104 0 7 chr9 92855232 92855540 -25007087 + AluSc SINE Alu 1 306 -3 180 198 117 108 chr9 92855540 92855594 -25007033 + MIR SINE MIR 190 250 -12 2295 81 0 17 chr9 92855656 92855953 -25006674 + AluY SINE Alu 1 292 -19 2225 101 0 0 chr9 92855963 92856269 -25006358 + AluSx SINE Alu 4 309 0 1063 138 0 24 chr9 92856779 92856946 -25005681 + FRAM SINE Alu 1 156 -20 209 326 11 11 chr9 92857032 92857121 -25005506 + GA-rich Low_complexity Low_complexity 2 90 0 268 299 8 16 chr9 92858224 92858351 -25004276 + CT-rich Low_complexity Low_complexity 3 128 0 2405 76 7 0 chr9 92858490 92858791 -25003836 + AluSx SINE Alu 5 307 -5 476 271 187 61 chr9 92860585 92860702 -25001925 - Charlie8 DNA MER1_type -84 257 156 2475 50 7 7 chr9 92860702 92861001 -25001626 - AluY SINE Alu -11 300 2 476 271 187 61 chr9 92861001 92861070 -25001557 - Charlie8 DNA MER1_type -185 156 97 1935 117 23 23 chr9 92861070 92861378 -25001249 - AluJb SINE Alu -4 308 1 476 271 187 61 chr9 92861378 92861785 -25000842 - Charlie8 DNA MER1_type -244 97 11 262 254 0 0 chr9 92862110 92862165 -25000462 - AluS SINE Alu -246 57 3 361 232 215 19 chr9 92862482 92862693 -24999934 - MIR SINE MIR -10 252 6 1896 149 32 74 chr9 92863496 92863673 -24998954 - MLT1B LTR MaLR 0 390 207 1914 128 0 49 chr9 92863673 92863978 -24998649 - AluJo SINE Alu -12 300 11 1896 149 32 74 chr9 92863978 92864203 -24998424 - MLT1B LTR MaLR -183 207 5 2026 131 57 0 chr9 92864252 92864535 -24998092 - AluSx SINE Alu -13 299 1 1379 162 0 25 chr9 92864540 92864781 -24997846 - AluJb SINE Alu -10 302 68 414 87 14 14 chr9 92864785 92864854 -24997773 + L1MB4 LINE L1 6112 6180 0 329 114 0 0 chr9 92864956 92865000 -24997627 - Alu SINE Alu -256 44 1 21 0 0 0 chr9 92865010 92865031 -24997596 + AT_rich Low_complexity Low_complexity 1 21 0 211 344 86 0 chr9 92865557 92865650 -24996977 + L2 LINE L2 2608 2708 -606 409 312 65 0 chr9 92865891 92866077 -24996550 + L2 LINE L2 2779 2976 -338 975 173 87 5 chr9 92866122 92866307 -24996320 - MER20 DNA MER1_type -19 200 1 611 318 92 9 chr9 92866307 92866622 -24996005 + L2 LINE L2 2973 3313 0 455 289 64 94 chr9 92866830 92867313 -24995314 - L2 LINE L2 -39 3233 2771 2042 134 42 3 chr9 92867451 92867786 -24994841 - L1MB4 LINE L1 0 6180 5833 1613 133 48 58 chr9 92867788 92868097 -24994530 - MER44D DNA MER2_type -2 607 32 429 153 11 0 chr9 92868108 92868200 -24994427 - L1MB4 LINE L1 -344 5836 5742 618 179 56 49 chr9 92868985 92869147 -24993480 + MER112 DNA MER1_type 91 253 -7 265 205 141 0 chr9 92869181 92869259 -24993368 - MIR SINE MIR -66 142 54 25 51 0 0 chr9 92869476 92869515 -24993112 + AT_rich Low_complexity Low_complexity 1 39 0 1581 173 4 0 chr9 92869515 92869763 -24992864 - AluJo SINE Alu -30 282 34 184 274 20 0 chr9 92869971 92870022 -24992605 + MIR3 SINE MIR 151 202 -6 444 251 45 48 chr9 92871288 92871520 -24991107 - MLT1J LTR MaLR -73 438 230 212 280 140 28 chr9 92871527 92871634 -24990993 - L2 LINE L2 -40 3232 3114 234 0 0 0 chr9 92871919 92871945 -24990682 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 281 300 0 25 chr9 92872292 92872372 -24990255 + MIR SINE MIR 28 105 -103 389 191 53 11 chr9 92872386 92872480 -24990147 + L2 LINE L2 3204 3301 -12 351 271 90 0 chr9 92873064 92873186 -24989441 - MIR SINE MIR -1 261 129 287 339 39 8 chr9 92873206 92873333 -24989294 + MIR SINE MIR 21 151 -111 2104 131 6 6 chr9 92873917 92874229 -24988398 - AluJb SINE Alu 0 312 1 282 56 0 0 chr9 92874758 92874794 -24987833 + (CAG)n Simple_repeat Simple_repeat 1 36 0 265 333 105 18 chr9 92876263 92876482 -24986145 - L2 LINE L2 -217 3055 2818 535 224 25 117 chr9 92876524 92876569 -24986058 + MER5B DNA MER1_type 1 49 -129 2317 90 0 23 chr9 92876569 92876879 -24985748 - AluSp SINE Alu -10 303 1 535 224 25 117 chr9 92876879 92877029 -24985598 + MER5B DNA MER1_type 49 178 0 276 235 173 0 chr9 92877658 92877739 -24984888 - MLT1G1 LTR MaLR -1 548 454 587 272 129 30 chr9 92877778 92878084 -24984543 - MLT1G1 LTR MaLR -248 347 4 601 148 0 0 chr9 92879312 92879400 -24983227 - AluJ/FLAM SINE Alu -223 89 2 2403 83 3 3 chr9 92879412 92879713 -24982914 - AluSp SINE Alu -11 302 2 2171 264 95 10 chr9 92879928 92880548 -24982079 + MER115 DNA AcHobo 11 683 -10 317 323 57 13 chr9 92880607 92880765 -24981862 - MIR3 SINE MIR -40 168 4 1734 208 112 52 chr9 92880946 92881255 -24981372 - L1MC5 LINE L1 -85 7876 7587 1789 154 27 17 chr9 92881255 92881554 -24981073 - AluJb SINE Alu -6 306 5 1734 208 112 52 chr9 92881554 92881880 -24980747 - L1MC5 LINE L1 -374 7587 7203 341 239 0 0 chr9 92881878 92881970 -24980657 - L1 LINE L1 -1822 4324 4233 * 1271 222 47 58 chr9 92882011 92882450 -24980177 - MER39 LTR ERV1 -2 705 67 286 160 20 0 chr9 92882441 92882491 -24980136 - MER34 LTR ERV1 -491 51 1 * 781 146 190 0 chr9 92882702 92882839 -24979788 - MER21B LTR ERV1 -375 488 326 1371 195 4 0 chr9 92882839 92883095 -24979532 - L1 LINE L1 -1902 4244 3988 399 41 0 0 chr9 92883126 92883175 -24979452 + (TTCC)n Simple_repeat Simple_repeat 4 52 0 1836 146 27 7 chr9 92883221 92883516 -24979111 - AluJb SINE Alu -10 302 2 1441 155 46 56 chr9 92883524 92883828 -24978799 - AluJo SINE Alu 0 312 12 3235 201 60 71 chr9 92883844 92883885 -24978742 - L1 LINE L1 -2161 3985 3945 189 0 0 0 chr9 92883885 92883906 -24978721 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 3235 201 60 71 chr9 92883906 92883976 -24978651 - L1 LINE L1 -2201 3945 3876 2360 104 0 3 chr9 92883976 92884284 -24978343 - AluSc SINE Alu -2 307 1 3235 201 60 71 chr9 92884284 92884573 -24978054 - L1 LINE L1 -2270 3876 3585 1940 133 24 3 chr9 92884573 92884866 -24977761 - AluSq SINE Alu -14 299 1 3235 201 60 71 chr9 92884866 92885007 -24977620 - L1 LINE L1 -2561 3585 3444 1903 165 13 3 chr9 92885007 92885316 -24977311 - AluJb SINE Alu 0 312 1 3235 201 60 71 chr9 92885316 92885434 -24977193 - L1 LINE L1 -2702 3444 3326 2439 98 0 0 chr9 92885434 92885741 -24976886 - AluSq SINE Alu -6 307 1 3235 201 60 71 chr9 92885741 92886260 -24976367 - L1 LINE L1 -2820 3326 2816 1999 246 101 49 chr9 92886228 92886922 -24975705 - L1M4b LINE L1 -6126 733 4 * 40672 59 37 2 chr9 92886961 92892896 -24969731 - L1PA7 LINE L1 0 6154 2 2316 104 0 3 chr9 92892967 92893274 -24969353 - AluSx SINE Alu -6 306 1 643 263 62 0 chr9 92893807 92893986 -24968641 - MER91B DNA MER1_type 0 190 1 2456 77 3 3 chr9 92894490 92894803 -24967824 - AluSp SINE Alu 0 313 1 1974 147 0 0 chr9 92894983 92895282 -24967345 - AluSx SINE Alu -11 301 3 224 330 138 0 chr9 92895917 92896026 -24966601 + L2 LINE L2 3145 3268 -4 2411 94 0 3 chr9 92896285 92896592 -24966035 + AluY SINE Alu 1 306 -5 309 89 0 0 chr9 92896622 92896667 -24965960 + (TA)n Simple_repeat Simple_repeat 2 46 0 288 154 0 0 chr9 92896924 92896976 -24965651 - L2 LINE L2 0 3313 3262 555 337 117 35 chr9 92896991 92897154 -24965473 + L2 LINE L2 2458 2606 -666 1952 152 0 26 chr9 92897154 92897463 -24965164 - AluJb SINE Alu -11 301 1 555 337 117 35 chr9 92897463 92898053 -24964574 + L2 LINE L2 2606 3272 0 252 379 90 10 chr9 92898350 92898638 -24963989 - L2 LINE L2 -537 2777 2467 2338 98 0 13 chr9 92899034 92899350 -24963277 - AluSx SINE Alu 0 312 1 2274 93 6 13 chr9 92899365 92899676 -24962951 - AluY SINE Alu -2 309 1 256 321 45 0 chr9 92899695 92899807 -24962820 - L2 LINE L2 -37 3235 3119 2549 69 0 3 chr9 92900202 92900507 -24962120 + AluSg SINE Alu 1 304 -6 2498 241 34 42 chr9 92901030 92901291 -24961336 - L1MEc LINE L1 -4541 1855 1593 1609 174 19 38 chr9 92901291 92901607 -24961020 - AluJo SINE Alu -2 310 1 2498 241 34 42 chr9 92901607 92902201 -24960426 - L1MEc LINE L1 -4803 1593 1007 542 88 64 12 chr9 92902215 92902386 -24960241 + (TA)n Simple_repeat Simple_repeat 1 180 0 390 248 34 6 chr9 92902397 92902881 -24959746 + (TTATA)n Simple_repeat Simple_repeat 1 497 0 1495 167 112 0 chr9 92902908 92903177 -24959450 - AluJo SINE Alu -12 300 2 3290 189 49 71 chr9 92903187 92903393 -24959234 - L1MEc LINE L1 -5499 897 688 2065 111 11 0 chr9 92903393 92903664 -24958963 + AluSx SINE Alu 1 274 -38 261 0 0 0 chr9 92903673 92903702 -24958925 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3290 189 49 71 chr9 92903702 92904399 -24958228 - L1MEc LINE L1 -5716 680 4 1140 300 167 65 chr9 92905056 92905864 -24956763 + L2 LINE L2 1890 2875 -397 2152 105 17 0 chr9 92905864 92906160 -24956467 - AluSq SINE Alu -12 301 1 1140 300 167 65 chr9 92906160 92906594 -24956033 + L2 LINE L2 2875 3264 -8 266 253 13 0 chr9 92907073 92907148 -24955479 + L1 LINE L1 3698 3773 -2373 964 92 0 0 chr9 92907161 92907281 -24955346 - AluSq/x SINE Alu -192 120 1 563 200 0 0 chr9 92907357 92907457 -24955170 - MER58 DNA MER1_type -2320 100 1 412 198 132 8 chr9 92907477 92907598 -24955029 - L1 LINE L1 -2313 3833 3698 814 305 137 60 chr9 92907761 92907811 -24954816 - L1M4 LINE L1 -2308 3838 3793 2097 158 3 0 chr9 92907811 92908115 -24954512 - AluSx SINE Alu -7 305 1 814 305 137 60 chr9 92908115 92908538 -24954089 - L1M4 LINE L1 -2353 3793 3404 2028 125 46 0 chr9 92908538 92908819 -24953808 + AluSx SINE Alu 7 300 -12 2344 83 7 7 chr9 92908821 92909121 -24953506 + AluSq SINE Alu 1 300 -13 814 305 137 60 chr9 92909121 92909303 -24953324 - L1M4 LINE L1 -2742 3404 3238 2408 74 3 7 chr9 92909303 92909599 -24953028 + AluY SINE Alu 1 295 -16 814 305 137 60 chr9 92909599 92909827 -24952800 - L1M4 LINE L1 -2908 3238 2881 266 235 29 29 chr9 92910014 92910116 -24952511 + (TATG)n Simple_repeat Simple_repeat 1 102 0 199 137 20 20 chr9 92910125 92910176 -24952451 + (TATATG)n Simple_repeat Simple_repeat 6 56 0 242 288 17 17 chr9 92910184 92910302 -24952325 + (TG)n Simple_repeat Simple_repeat 1 118 0 575 266 29 74 chr9 92911560 92911812 -24950815 + MIR SINE MIR 3 249 -13 427 296 115 13 chr9 92914352 92914503 -24948124 - L1ME4a LINE L1 0 6121 5938 405 39 0 0 chr9 92914503 92914554 -24948073 + (TG)n Simple_repeat Simple_repeat 2 52 0 427 296 115 13 chr9 92914554 92914628 -24947999 - L1ME4a LINE L1 -183 5938 5873 313 294 125 38 chr9 92914857 92915041 -24947586 - HAL1 LINE L1 -1478 1029 830 516 312 0 22 chr9 92915057 92915195 -24947432 - MER5A DNA MER1_type 0 189 55 4473 178 21 20 chr9 92915775 92916779 -24945848 - L1MB8 LINE L1 0 6178 5176 1707 155 3 68 chr9 92916779 92917089 -24945538 - AluJo SINE Alu -22 290 1 4473 178 21 20 chr9 92917089 92917625 -24945002 - L1MB8 LINE L1 -1002 5176 4642 21 36 0 0 chr9 92917627 92917655 -24944972 + AT_rich Low_complexity Low_complexity 1 28 0 198 0 0 0 chr9 92918106 92918128 -24944499 + (T)n Simple_repeat Simple_repeat 1 22 0 344 277 46 23 chr9 92918595 92918725 -24943902 - L1ME3A LINE L1 -14 6156 6024 1743 233 65 42 chr9 92918745 92918964 -24943663 - L1MB8 LINE L1 -3195 2951 2739 1908 135 4 0 chr9 92918964 92919238 -24943389 - AluSx SINE Alu -1 311 37 1743 233 65 42 chr9 92919238 92919714 -24942913 - L1MB8 LINE L1 -3407 2739 2240 1940 170 0 0 chr9 92919757 92920051 -24942576 + AluJb SINE Alu 12 305 -7 321 212 25 0 chr9 92920647 92920765 -24941862 + CT-rich Low_complexity Low_complexity 4 124 0 1112 225 0 9 chr9 92920767 92920989 -24941638 - MLT1F1 LTR MaLR -170 397 178 4455 158 27 25 chr9 92920994 92921827 -24940800 + L1MB7 LINE L1 5294 6131 -53 2071 117 28 7 chr9 92921827 92922117 -24940510 + AluSx SINE Alu 1 296 -16 4455 158 27 25 chr9 92922117 92922163 -24940464 + L1MB7 LINE L1 6131 6175 -9 914 218 11 0 chr9 92922167 92922346 -24940281 - MLT1F1 LTR MaLR -381 186 6 740 249 74 66 chr9 92922352 92922450 -24940177 + MIR SINE MIR 4 100 -162 2049 144 0 13 chr9 92922450 92922749 -24939878 - AluJo SINE Alu -17 295 1 740 249 74 66 chr9 92922749 92922907 -24939720 + MIR SINE MIR 100 262 0 1953 150 0 14 chr9 92924474 92924768 -24937859 - AluJo SINE Alu -18 294 5 944 180 11 44 chr9 92924982 92925165 -24937462 - AluJb SINE Alu -2 310 134 315 265 136 34 chr9 92925302 92925449 -24937178 + MIR3 SINE MIR 5 166 -42 210 250 130 46 chr9 92925696 92925804 -24936823 + L2 LINE L2 3063 3179 -93 475 314 15 29 chr9 92926721 92926925 -24935702 + L3 LINE CR1 1308 1508 -69 205 165 35 35 chr9 92927279 92927364 -24935263 + CT-rich Low_complexity Low_complexity 3 87 0 1867 156 0 11 chr9 92927592 92927898 -24934729 + AluJo SINE Alu 5 307 0 513 289 138 13 chr9 92927944 92928242 -24934385 - L1MC4a LINE L1 -1980 5828 5494 404 291 38 19 chr9 92928283 92928441 -24934186 + L3 LINE CR1 1414 1574 -3 236 312 0 0 chr9 92928903 92928980 -24933647 + CT-rich Low_complexity Low_complexity 2 78 0 772 302 103 0 chr9 92928990 92929222 -24933405 + MIR SINE MIR 2 257 -5 2294 111 0 7 chr9 92929238 92929545 -24933082 + AluSg SINE Alu 1 305 -5 183 214 214 0 chr9 92929546 92929602 -24933025 - L2 LINE L2 -3 3310 3243 405 308 58 43 chr9 92929639 92929847 -24932780 - L2 LINE L2 -212 3060 2850 327 264 126 24 chr9 92929952 92930119 -24932508 + L2 LINE L2 2791 2974 -340 224 312 88 71 chr9 92930237 92930407 -24932220 + L2 LINE L2 3030 3202 -70 2402 92 3 0 chr9 92930827 92931132 -24931495 + AluSp SINE Alu 1 306 -7 618 343 28 16 chr9 92931312 92931566 -24931061 - MIR SINE MIR -5 257 1 461 246 46 74 chr9 92931669 92931844 -24930783 + MIR3 SINE MIR 23 192 -16 234 81 0 0 chr9 92933390 92933427 -24929200 + (A)n Simple_repeat Simple_repeat 1 37 0 452 215 32 0 chr9 92933692 92933785 -24928842 + MIR SINE MIR 105 200 -62 240 208 129 59 chr9 92933944 92934045 -24928582 - L1ME4a LINE L1 -47 6074 5967 285 185 0 0 chr9 92934078 92934143 -24928484 + (TG)n Simple_repeat Simple_repeat 2 66 0 2453 68 0 7 chr9 92934157 92934451 -24928176 - AluY SINE Alu -19 292 1 261 254 0 17 chr9 92934943 92935002 -24927625 - L2 LINE L2 -10 3262 3205 270 324 157 0 chr9 92935113 92935221 -24927406 + L2 LINE L2 3147 3271 -1 314 301 37 31 chr9 92935255 92935418 -24927209 - L2 LINE L2 -190 3082 2919 826 204 88 42 chr9 92936267 92936552 -24926075 - L1MC5 LINE L1 -54 7907 7610 309 314 91 33 chr9 92936674 92936884 -24925743 - L1MCa LINE L1 -4226 2200 1979 320 247 32 32 chr9 92936914 92937007 -24925620 - L1MCa LINE L1 -4354 2072 1980 302 292 116 47 chr9 92937029 92937262 -24925365 - L1ME4a LINE L1 -111 6010 5762 1841 119 86 7 chr9 92937329 92937607 -24925020 - AluSq SINE Alu -11 302 3 2300 107 3 0 chr9 92937621 92937912 -24924715 - AluSx SINE Alu -20 292 1 198 284 0 54 chr9 92937942 92938016 -24924611 - MIR SINE MIR -11 251 182 278 333 26 0 chr9 92938289 92938367 -24924260 + L2 LINE L2 2893 2972 -341 248 363 38 31 chr9 92939755 92939917 -24922710 + MER5A DNA MER1_type 17 189 0 211 219 24 0 chr9 92939963 92940004 -24922623 - L3 LINE CR1 -136 1441 1400 323 246 123 8 chr9 92940279 92940409 -24922218 - L1ME4a LINE L1 0 6121 5977 1422 154 57 0 chr9 92940609 92940836 -24921791 - AluJb SINE Alu -72 240 1 2213 125 3 3 chr9 92940925 92941237 -24921390 - AluSx SINE Alu 0 312 1 371 258 46 73 chr9 92941608 92941759 -24920868 + MIR SINE MIR 76 222 -40 2487 81 0 0 chr9 92942616 92942913 -24919714 - AluSx SINE Alu -15 297 1 243 303 90 39 chr9 92943037 92943253 -24919374 - L2 LINE L2 -5 3308 3005 2326 106 0 16 chr9 92944695 92945006 -24917621 + AluSx SINE Alu 1 306 -6 2300 132 0 0 chr9 92945007 92945317 -24917310 + AluSx SINE Alu 1 310 -2 239 306 75 45 chr9 92945359 92945493 -24917134 - MIR SINE MIR -71 191 54 317 212 131 0 chr9 92945665 92945764 -24916863 - L2 LINE L2 0 3313 3202 578 234 65 0 chr9 92945766 92945920 -24916707 + MER3 DNA MER1_type 41 204 -5 331 289 91 0 chr9 92946295 92946416 -24916211 - MIR3 SINE MIR -29 179 48 436 259 105 49 chr9 92946525 92946687 -24915940 + MIR3 SINE MIR 30 200 -8 2264 123 0 7 chr9 92946748 92947050 -24915577 - AluSx SINE Alu -12 300 1 200 127 18 55 chr9 92948662 92948717 -24913910 + MIR3 SINE MIR 2 54 -154 450 310 65 48 chr9 92948849 92949078 -24913549 + MIR SINE MIR 18 250 -12 220 200 0 0 chr9 92950008 92950048 -24912579 + CT-rich Low_complexity Low_complexity 3 42 0 182 250 0 0 chr9 92950766 92950806 -24911821 + L2 LINE L2 3219 3258 -14 272 232 155 58 chr9 92952331 92952470 -24910157 - MIR3 SINE MIR -31 177 28 640 293 34 48 chr9 92953768 92954123 -24908504 + L3 LINE CR1 1147 1496 -81 365 274 34 14 chr9 92954170 92954316 -24908311 - MER103 DNA DNA -1 165 17 233 368 11 0 chr9 92954397 92954484 -24908143 + L3 LINE CR1 1489 1576 -1 459 183 23 99 chr9 92955079 92955114 -24907513 + MIR SINE MIR 77 113 -149 2235 102 3 10 chr9 92955114 92955409 -24907218 + AluSc SINE Alu 1 293 -16 459 183 23 99 chr9 92955409 92955504 -24907123 + MIR SINE MIR 113 197 -65 2217 121 11 6 chr9 92956054 92956409 -24906218 - L1PB1 LINE L1 -1 6150 5794 268 309 36 18 chr9 92956478 92956588 -24906039 + L2 LINE L2 3159 3270 -2 273 290 97 11 chr9 92957613 92957706 -24904921 + MIR SINE MIR 49 149 -113 244 321 12 0 chr9 92958188 92958272 -24904355 - MIR SINE MIR -97 165 81 2414 97 6 0 chr9 92959025 92959336 -24903291 + AluSp SINE Alu 1 313 0 725 266 61 26 chr9 92959636 92959865 -24902762 - MIR SINE MIR -6 256 20 468 242 31 8 chr9 92960104 92960232 -24902395 - Charlie8 DNA MER1_type -2161 256 126 298 351 47 27 chr9 92960339 92960487 -24902140 + L2 LINE L2 3122 3272 0 643 167 0 0 chr9 92961295 92961397 -24901230 + FRAM SINE Alu 20 121 -55 2313 96 10 16 chr9 92961459 92961773 -24900854 + AluSx SINE Alu 1 312 0 25234 40 42 3 chr9 92962049 92965407 -24897220 + L1P LINE L1 476 3965 -2181 886 294 68 6 chr9 92965514 92965851 -24896776 - L1ME4a LINE L1 -236 5885 5528 2487 93 0 3 chr9 92966088 92966400 -24896227 - AluSq SINE Alu -2 311 1 828 167 0 0 chr9 92966456 92966582 -24896045 - FRAM SINE Alu -30 146 21 206 314 153 8 chr9 92968084 92968202 -24894425 + MIR3 SINE MIR 2 136 -72 480 262 41 116 chr9 92968325 92968687 -24893940 - MARNA DNA Mariner -39 547 213 429 318 50 11 chr9 92968780 92968959 -24893668 - MIR SINE MIR -17 245 60 189 0 0 0 chr9 92969257 92969278 -24893349 + (A)n Simple_repeat Simple_repeat 1 21 0 246 333 157 20 chr9 92969292 92969490 -24893137 - L3 LINE CR1 0 1577 1353 244 233 33 0 chr9 92969652 92969712 -24892915 - L2 LINE L2 -45 3227 3166 212 296 62 25 chr9 92969708 92969789 -24892838 - L3 LINE CR1 -622 955 872 * 198 0 0 0 chr9 92970291 92970313 -24892314 + (T)n Simple_repeat Simple_repeat 1 22 0 236 29 0 29 chr9 92970563 92970597 -24892030 + (TTA)n Simple_repeat Simple_repeat 2 34 0 344 204 14 0 chr9 92970725 92970809 -24891818 + MIR SINE MIR 77 147 -61 462 275 88 20 chr9 92971234 92971529 -24891098 - L1MC4a LINE L1 -1878 5930 5616 305 261 65 42 chr9 92972108 92972253 -24890374 - MIR3 SINE MIR -76 132 8 652 255 93 9 chr9 92973039 92973255 -24889372 + MIR SINE MIR 23 256 -6 276 286 0 0 chr9 92975527 92975597 -24887030 + L2 LINE L2 3203 3272 0 506 291 14 7 chr9 92976186 92976334 -24886293 + MIR SINE MIR 3 151 -111 564 266 121 24 chr9 92977709 92977916 -24884711 + MIR SINE MIR 9 235 -27 670 198 175 46 chr9 92981098 92981315 -24881312 + MIR SINE MIR 18 262 0 371 204 28 93 chr9 92981528 92981636 -24880991 + MIR SINE MIR 89 189 -73 205 302 42 31 chr9 92982405 92982501 -24880126 + MIR SINE MIR 132 228 -34 226 322 22 22 chr9 92982857 92982947 -24879680 + MIR SINE MIR 64 153 -109 2297 123 0 0 chr9 92983009 92983311 -24879316 - AluSx SINE Alu -10 302 1 223 316 0 0 chr9 92983388 92983464 -24879163 - MIR SINE MIR -73 135 60 504 280 169 52 chr9 92983957 92984136 -24878491 + L2 LINE L2 2927 3084 -229 1738 168 27 9 chr9 92984136 92984392 -24878235 + MER2 DNA MER2_type 1 266 -78 1908 154 7 16 chr9 92984392 92984697 -24877930 - AluJo SINE Alu -10 302 1 1738 168 27 9 chr9 92984697 92984774 -24877853 + MER2 DNA MER2_type 266 340 -4 504 280 169 52 chr9 92984774 92984929 -24877698 + L2 LINE L2 3084 3304 -9 2082 118 3 50 chr9 92984929 92985252 -24877375 - AluSg SINE Alu -2 308 1 280 246 227 0 chr9 92985360 92985470 -24877157 - MIR SINE MIR -98 164 30 699 256 28 6 chr9 92987820 92988000 -24874627 + MIR SINE MIR 65 248 -14 1680 114 0 4 chr9 92989113 92989341 -24873286 - AluSx SINE Alu -22 290 64 272 306 57 40 chr9 92990112 92990236 -24872391 - L2 LINE L2 -6 3307 3182 251 239 141 0 chr9 92990524 92990595 -24872032 - L2 LINE L2 -95 3177 3097 * 298 229 167 21 chr9 92990593 92990689 -24871938 + MIR SINE MIR 79 188 -74 779 290 150 26 chr9 92991662 92992330 -24870297 - L2 LINE L2 -2 3311 2560 355 290 10 10 chr9 92994490 92994590 -24868037 - MIR SINE MIR -117 145 46 762 245 20 75 chr9 92995526 92995779 -24866848 - MIR SINE MIR -19 243 5 487 245 20 66 chr9 92996301 92996452 -24866175 - MIR3 SINE MIR -49 159 16 435 318 13 19 chr9 92996644 92996798 -24865829 + MIR3 SINE MIR 18 170 -38 534 101 0 0 chr9 92997353 92997432 -24865195 - MADE1 DNA Mariner -1 79 1 306 298 219 11 chr9 92998968 92999146 -24863481 + MIR SINE MIR 32 246 -16 186 71 0 0 chr9 92999241 92999269 -24863358 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 896 234 73 56 chr9 92999283 92999710 -24862917 - L1ME4a LINE L1 0 6121 5688 571 147 128 0 chr9 92999710 92999819 -24862808 + FRAM SINE Alu 39 161 -15 206 322 0 0 chr9 92999838 92999897 -24862730 + L2 LINE L2 3243 3301 -12 2096 127 7 7 chr9 92999897 93000197 -24862430 + AluSx SINE Alu 5 304 -8 404 223 23 31 chr9 93000212 93000342 -24862285 - L1ME4a LINE L1 -456 5665 5537 427 267 0 30 chr9 93000347 93000448 -24862179 - MER81 DNA DNA -5 109 12 405 303 80 29 chr9 93000488 93000760 -24861867 - L1ME4a LINE L1 -744 5402 5145 3737 160 20 28 chr9 93000760 93001380 -24861247 - L1MB8 LINE L1 0 6178 5564 1905 154 34 0 chr9 93001380 93001498 -24861129 + AluSx SINE Alu 2 115 -197 180 0 0 0 chr9 93001498 93001518 -24861109 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1905 154 34 0 chr9 93001518 93001697 -24860930 + AluSx SINE Alu 115 309 -3 3737 160 20 28 chr9 93001697 93001856 -24860771 - L1MB8 LINE L1 -614 5564 5405 405 303 80 29 chr9 93001856 93002047 -24860580 - L1ME4a LINE L1 -1001 5145 4918 2062 60 0 8 chr9 93002123 93002395 -24860232 - AluY SINE Alu 0 305 36 270 326 50 18 chr9 93002471 93002753 -24859874 - L1ME4a LINE L1 -1522 4624 4334 2056 147 0 3 chr9 93002972 93003272 -24859355 + AluJb SINE Alu 1 299 -13 449 49 49 0 chr9 93003272 93003353 -24859274 + (TA)n Simple_repeat Simple_repeat 1 85 0 2313 100 0 3 chr9 93003372 93003673 -24858954 + AluSq SINE Alu 1 300 -13 320 247 79 22 chr9 93003720 93003809 -24858818 - L1ME LINE L1 -336 5785 5692 225 235 167 10 chr9 93003854 93003956 -24858671 - MIR SINE MIR -44 218 101 893 334 101 23 chr9 93003958 93004122 -24858505 - L1ME LINE L1 -763 5383 5233 2233 117 3 3 chr9 93004122 93004420 -24858207 - AluSx SINE Alu -14 298 1 893 334 101 23 chr9 93004420 93005018 -24857609 - L1ME LINE L1 -913 5233 4735 2200 93 3 0 chr9 93005286 93005576 -24857051 - AluSg SINE Alu -17 293 3 469 318 87 39 chr9 93005693 93006208 -24856419 - HAL1 LINE L1 -738 1769 1230 189 0 0 0 chr9 93006210 93006231 -24856396 + (TAA)n Simple_repeat Simple_repeat 2 22 0 653 263 20 0 chr9 93006288 93006440 -24856187 - MIR SINE MIR -105 157 3 200 274 96 0 chr9 93006580 93006653 -24855974 - MIR SINE MIR -71 137 58 225 242 32 32 chr9 93006863 93006925 -24855702 - L2 LINE L2 -12 3260 3199 428 285 145 11 chr9 93006926 93007112 -24855515 - MLT1K LTR MaLR 0 588 378 636 276 41 27 chr9 93007173 93007394 -24855233 - MLT1K LTR MaLR -305 283 60 353 319 140 40 chr9 93007584 93008034 -24854593 - L2 LINE L2 -375 2939 2423 2306 84 3 3 chr9 93008034 93008331 -24854296 + AluSq SINE Alu 1 297 -16 353 319 140 40 chr9 93008331 93008429 -24854198 - L2 LINE L2 -891 2423 2336 312 325 97 9 chr9 93008632 93008746 -24853881 - MER5C DNA MER1_type -200 124 1 251 243 0 43 chr9 93008746 93008816 -24853811 - MIR3 SINE MIR -48 160 94 431 188 0 47 chr9 93008940 93009025 -24853602 - AluSc SINE Alu -114 195 115 240 266 0 0 chr9 93009213 93009322 -24853305 + (TG)n Simple_repeat Simple_repeat 1 109 0 221 317 158 0 chr9 93009327 93009409 -24853218 - MIR SINE MIR -79 183 89 670 152 45 45 chr9 93010270 93010402 -24852225 - FLAM_C SINE Alu -1 132 1 200 285 0 59 chr9 93013738 93013924 -24848703 + C-rich Low_complexity Low_complexity 5 179 0 * 342 235 72 12 chr9 93013816 93013982 -24848645 + (CCCTAA)n Simple_repeat Simple_repeat 3 178 0 209 111 44 0 chr9 93014233 93014278 -24848349 + G-rich Low_complexity Low_complexity 1 47 0 321 293 64 14 chr9 93017756 93017896 -24844731 + LTR16C LTR ERVL 241 387 -104 * 547 144 29 0 chr9 93017893 93017997 -24844630 + MLT1C LTR MaLR 361 467 0 4317 290 69 29 chr9 93018005 93018799 -24843828 + L1MD2 LINE L1 2130 2891 -3255 2105 119 10 0 chr9 93018799 93019092 -24843535 + AluSx SINE Alu 1 296 -16 1672 174 45 0 chr9 93019094 93019215 -24843412 + AluSx SINE Alu 1 115 -197 186 71 0 0 chr9 93019215 93019243 -24843384 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 1672 174 45 0 chr9 93019243 93019409 -24843218 + AluSx SINE Alu 115 301 -11 4317 290 69 29 chr9 93019409 93020427 -24842200 + L1MD2 LINE L1 2891 4075 -2071 3877 90 29 9 chr9 93020427 93020972 -24841655 - LTR38 LTR ERV1 0 556 1 4317 290 69 29 chr9 93020972 93021653 -24840974 + L1MD2 LINE L1 4075 4727 -1419 1176 158 0 0 chr9 93021658 93021835 -24840792 - AluSg/x SINE Alu -1 311 135 2125 219 98 23 chr9 93021866 93023004 -24839623 + L1MD2 LINE L1 4777 5990 -369 464 220 20 0 chr9 93023005 93023105 -24839522 + L1MD2 LINE L1 6256 6357 -2 308 297 36 43 chr9 93023303 93023441 -24839186 - L2 LINE L2 -19 3294 3158 375 285 15 8 chr9 93023445 93023575 -24839052 + LTR41 LTR ERVL 2 132 -641 776 326 78 7 chr9 93024141 93024663 -24837964 - L2 LINE L2 -155 3158 2606 312 296 74 28 chr9 93024770 93025094 -24837533 + L1MEc LINE L1 136 474 -5922 4034 182 41 13 chr9 93025184 93026444 -24836183 + L1MB7 LINE L1 4891 6184 0 320 206 16 0 chr9 93026602 93026665 -24835962 + MLT1D LTR MaLR 4 67 -438 374 167 15 0 chr9 93026668 93026734 -24835893 + MLT1D LTR MaLR 1 67 -438 358 136 17 0 chr9 93026737 93026796 -24835831 + MLT1D LTR MaLR 1 60 -445 1527 183 41 36 chr9 93026806 93027199 -24835428 + MLT1D LTR MaLR 5 399 -106 2527 201 86 34 chr9 93028298 93028595 -24834032 + MER67B LTR ERV1 1 281 -380 2074 105 17 10 chr9 93028595 93028889 -24833738 + AluSx SINE Alu 1 296 -16 2527 201 86 34 chr9 93028889 93029218 -24833409 + MER67B LTR ERV1 281 660 -1 1287 240 37 42 chr9 93029489 93029923 -24832704 - MER74A LTR ERVL -126 432 1 304 283 48 30 chr9 93029934 93030100 -24832527 - LTR41 LTR ERVL -21 752 584 1810 148 0 11 chr9 93030127 93030410 -24832217 - AluJo SINE Alu -32 280 1 399 289 9 0 chr9 93030426 93030540 -24832087 - L1MC4 LINE L1 -1333 6989 1995 3859 40 0 0 chr9 93030541 93030995 -24831632 - L1PA5 LINE L1 -8 6146 5693 192 200 0 0 chr9 93035395 93035440 -24827187 + (CA)n Simple_repeat Simple_repeat 2 46 0 665 300 104 64 chr9 93035800 93036360 -24826267 + L1MEc LINE L1 538 1187 -5015 517 245 0 22 chr9 93036366 93036550 -24826077 + (CA)n Simple_repeat Simple_repeat 1 180 0 453 302 88 34 chr9 93036555 93036996 -24825631 + HAL1 LINE L1 1183 1647 -860 1993 112 42 0 chr9 93037010 93037297 -24825330 + AluSg SINE Alu 1 299 -11 519 363 75 62 chr9 93037688 93038374 -24824253 + L1MEc LINE L1 2314 2987 -3228 938 290 96 12 chr9 93038515 93038994 -24823633 + MER69B DNA AcHobo 708 1226 0 24 0 0 0 chr9 93039055 93039079 -24823548 + AT_rich Low_complexity Low_complexity 1 24 0 2365 29 0 4 chr9 93039079 93039356 -24823271 - L1PA5 LINE L1 -6 6148 5873 2058 47 0 0 chr9 93039356 93039632 -24822995 + L1PA5 LINE L1 5604 5879 -275 206 79 0 26 chr9 93043658 93043696 -24818931 + (TTTTTG)n Simple_repeat Simple_repeat 3 39 0 329 324 48 0 chr9 93043986 93044091 -24818536 + L1ME4a LINE L1 5804 5913 -208 831 149 0 8 chr9 93044190 93044324 -24818303 - AluJo SINE Alu -178 134 2 275 301 37 25 chr9 93044695 93044858 -24817769 + (CGGGG)n Simple_repeat Simple_repeat 5 169 0 2054 121 0 3 chr9 93045749 93046046 -24816581 + AluSx SINE Alu 6 301 -11 218 242 30 0 chr9 93046901 93046967 -24815660 - L2 LINE L2 -323 2990 2923 259 286 0 127 chr9 93047146 93047335 -24815292 + G-rich Low_complexity Low_complexity 4 168 0 1924 132 24 0 chr9 93047562 93047850 -24814777 - AluSp SINE Alu -18 295 1 221 122 49 0 chr9 93050487 93050528 -24812099 + (TCTCTG)n Simple_repeat Simple_repeat 4 46 0 717 151 0 0 chr9 93050566 93050672 -24811955 + FLAM_C SINE Alu 1 106 -37 324 154 31 0 chr9 93050742 93050807 -24811820 - Alu SINE Alu 0 300 234 1936 77 49 45 chr9 93050807 93051094 -24811533 - AluSx SINE Alu -24 288 1 243 281 141 25 chr9 93051179 93051300 -24811327 + L2 LINE L2 3138 3272 0 335 247 101 0 chr9 93051309 93051398 -24811229 + MIR SINE MIR 107 204 -58 318 308 96 0 chr9 93051393 93051497 -24811130 - L2 LINE L2 0 3272 3159 * 214 150 25 0 chr9 93051757 93051797 -24810830 + MIR SINE MIR 105 145 -63 195 42 0 0 chr9 93053367 93053391 -24809236 + (CA)n Simple_repeat Simple_repeat 2 25 0 * 369 0 0 0 chr9 93053390 93053431 -24809196 + (TC)n Simple_repeat Simple_repeat 1 41 0 417 152 68 54 chr9 93053436 93053622 -24809005 - MER21A LTR ERV1 -27 904 677 644 130 22 0 chr9 93053623 93053744 -24808883 + AluSg/x SINE Alu 187 309 0 1822 169 48 35 chr9 93053744 93054116 -24808511 - MER21A LTR ERV1 -244 687 311 1163 124 48 172 chr9 93054276 93054631 -24807996 - MER21A LTR ERV1 -620 311 1 2152 90 3 35 chr9 93054958 93055269 -24807358 + AluSg SINE Alu 1 301 -9 1935 132 24 0 chr9 93055283 93055570 -24807057 + AluJb SINE Alu 4 297 -15 1115 164 0 19 chr9 93055639 93055846 -24806781 - AluSq SINE Alu -11 302 100 304 234 135 27 chr9 93056245 93056356 -24806271 - MIR SINE MIR -63 145 23 823 120 0 70 chr9 93056789 93056931 -24805696 + AluJo/FLAM SINE Alu 1 132 -180 2279 116 0 0 chr9 93056931 93057241 -24805386 + AluSg SINE Alu 1 310 0 1987 111 0 21 chr9 93057246 93057534 -24805093 + AluSq SINE Alu 1 282 -31 2241 86 3 0 chr9 93057534 93057825 -24804802 + AluSq SINE Alu 6 297 -16 26 116 0 0 chr9 93058499 93058637 -24803990 + GC_rich Low_complexity Low_complexity 1 138 0 217 167 24 0 chr9 93059226 93059268 -24803359 + (CA)n Simple_repeat Simple_repeat 1 43 0 207 318 15 0 chr9 93059576 93059642 -24802985 + MIR3 SINE MIR 118 184 -24 238 298 85 76 chr9 93060383 93060712 -24801915 - L2 LINE L2 -96 3176 2845 1051 290 95 34 chr9 93060730 93061268 -24801359 - MLT1E LTR MaLR -17 576 6 1973 119 0 14 chr9 93061317 93061635 -24800992 + AluSx SINE Alu 1 314 0 266 257 54 0 chr9 93061717 93061791 -24800836 - MIR3 SINE MIR -54 154 77 306 292 0 22 chr9 93061837 93061926 -24800701 - MLT1B LTR MaLR -59 331 245 356 368 7 21 chr9 93061966 93062110 -24800517 - MIR SINE MIR -54 208 67 1615 214 97 23 chr9 93062599 93063030 -24799597 - MLT1C LTR MaLR -4 463 1 1485 128 72 11 chr9 93063981 93064334 -24798293 - AluJb SINE Alu 0 370 2 223 329 14 0 chr9 93064554 93064627 -24798000 + MIR3 SINE MIR 3 76 -132 347 283 113 0 chr9 93064759 93064865 -24797762 - MIR SINE MIR -78 184 67 297 269 92 8 chr9 93065898 93066017 -24796610 + MIR3 SINE MIR 9 137 -71 226 315 45 0 chr9 93066205 93066294 -24796333 + MIR SINE MIR 29 121 -141 374 279 91 1 chr9 93066657 93066789 -24795838 + MIR SINE MIR 34 174 -58 207 0 0 0 chr9 93067669 93067692 -24794935 + (CACCC)n Simple_repeat Simple_repeat 4 26 0 202 326 20 31 chr9 93068102 93068200 -24794427 - MIR3 SINE MIR -29 179 83 356 156 16 0 chr9 93068860 93068935 -24793692 + AluS SINE Alu 1 62 -246 2046 131 0 3 chr9 93069035 93069326 -24793301 - AluSx SINE Alu -22 290 1 222 171 0 0 chr9 93069328 93069369 -24793258 + T-rich Low_complexity Low_complexity 3 43 0 1569 169 10 40 chr9 93069371 93069398 -24793229 - AluJb SINE Alu 0 312 286 180 97 0 0 chr9 93069398 93069429 -24793198 + (TCTCTG)n Simple_repeat Simple_repeat 4 34 0 1569 169 10 40 chr9 93069429 93069702 -24792925 - AluJb SINE Alu -26 286 21 388 177 140 107 chr9 93070094 93070196 -24792431 + MIR SINE MIR 50 147 -115 2158 121 3 3 chr9 93070196 93070501 -24792126 + AluSx SINE Alu 1 305 -7 388 177 140 107 chr9 93070501 93070604 -24792023 + MIR SINE MIR 147 258 -4 548 233 107 7 chr9 93070772 93070922 -24791705 + MIR3 SINE MIR 23 187 -21 583 237 22 0 chr9 93071256 93071391 -24791236 + L2 LINE L2 3134 3271 -1 749 317 12 12 chr9 93072153 93072402 -24790225 + MIR SINE MIR 9 257 -5 533 295 11 29 chr9 93072408 93072592 -24790035 - MIR SINE MIR -62 146 16 348 94 0 0 chr9 93073384 93073437 -24789190 + (GGA)n Simple_repeat Simple_repeat 1 53 0 381 70 0 0 chr9 93074006 93074063 -24788564 + (TG)n Simple_repeat Simple_repeat 2 58 0 314 317 10 0 chr9 93074622 93074723 -24787904 - MIR SINE MIR -74 134 33 206 220 0 0 chr9 93075296 93075346 -24787281 + L2 LINE L2 2914 2963 -309 261 0 0 0 chr9 93075347 93075376 -24787251 + (TCCCC)n Simple_repeat Simple_repeat 1 29 0 555 78 26 0 chr9 93076138 93076215 -24786412 - MADE1 DNA Mariner 0 80 2 290 263 93 8 chr9 93076222 93076340 -24786287 - MIR3 SINE MIR -71 137 10 222 355 58 8 chr9 93076526 93076647 -24785980 + MIR3 SINE MIR 78 204 -4 720 35 0 0 chr9 93077697 93077784 -24784843 + (TTCC)n Simple_repeat Simple_repeat 1 87 0 226 404 72 45 chr9 93077784 93078007 -24784620 - L2 LINE L2 -17 3255 3027 2123 264 84 20 chr9 93078400 93078577 -24784050 - L1ME3A LINE L1 -5 6165 6001 2107 78 53 0 chr9 93078577 93078858 -24783769 - AluSx SINE Alu -16 296 1 2123 264 84 20 chr9 93078858 93079929 -24782698 - L1ME3A LINE L1 -169 6001 4831 241 323 11 11 chr9 93079932 93080025 -24782602 - L2 LINE L2 -255 3017 2925 183 328 17 0 chr9 93080715 93080773 -24781854 - MIR SINE MIR -76 132 74 549 279 131 27 chr9 93080983 93081205 -24781422 - MIR SINE MIR -3 259 15 188 333 15 0 chr9 93081768 93081834 -24780793 + L2 LINE L2 3246 3312 -1 572 300 105 5 chr9 93081879 93082089 -24780538 + MIR SINE MIR 20 250 -12 205 309 100 27 chr9 93082394 93082504 -24780123 + L2 LINE L2 3151 3268 -4 222 315 0 14 chr9 93083567 93083640 -24778987 + MIR SINE MIR 52 123 -85 404 307 16 16 chr9 93083704 93083831 -24778796 - MER5B DNA MER1_type -48 130 4 203 324 235 0 chr9 93083842 93083944 -24778683 - MER5A DNA MER1_type 0 189 64 1882 59 0 0 chr9 93083944 93084189 -24778438 + AluY SINE Alu 61 305 0 192 343 84 84 chr9 93084425 93084746 -24777881 + L2 LINE L2 2899 3219 -53 1999 122 3 14 chr9 93085061 93085401 -24777226 + AluSq SINE Alu 1 337 0 264 171 73 12 chr9 93085837 93085919 -24776708 - MLT1K LTR MaLR -11 577 491 2067 129 3 0 chr9 93085998 93086293 -24776334 + AluSx SINE Alu 1 296 -16 1190 258 67 61 chr9 93086483 93086910 -24775717 - MLT1H LTR MaLR 0 549 117 2235 117 0 0 chr9 93086910 93087210 -24775417 + AluSx SINE Alu 1 300 -12 1190 258 67 61 chr9 93087210 93087306 -24775321 - MLT1H LTR MaLR -432 117 23 382 321 109 17 chr9 93087498 93087800 -24774827 - MLT1K LTR MaLR -131 457 128 354 266 106 9 chr9 93088460 93088573 -24774054 - L2 LINE L2 0 3313 3190 405 239 77 0 chr9 93088573 93088690 -24773937 + MER103 DNA DNA 39 164 -2 227 258 251 31 chr9 93088711 93088874 -24773753 - MIR3 SINE MIR -3 205 7 337 342 52 68 chr9 93088898 93089411 -24773216 - L1M4c LINE L1 -1205 1538 931 269 254 9 82 chr9 93089882 93089992 -24772635 - MIR SINE MIR -71 137 36 384 322 20 46 chr9 93090208 93090360 -24772267 - MIR3 SINE MIR -54 154 7 2277 71 3 46 chr9 93090423 93090747 -24771880 + AluY SINE Alu 1 310 -1 21 0 0 0 chr9 93091339 93091360 -24771267 + AT_rich Low_complexity Low_complexity 1 21 0 488 274 75 7 chr9 93091787 93091933 -24770694 - MIR SINE MIR -66 196 41 436 250 16 39 chr9 93091992 93092120 -24770507 + MIR3 SINE MIR 82 206 -2 486 298 99 26 chr9 93092218 93092409 -24770218 - MIR SINE MIR -10 252 48 307 280 108 25 chr9 93092440 93092597 -24770030 + L2 LINE L2 3140 3309 -4 218 130 0 56 chr9 93093122 93093176 -24769451 + (GAAAA)n Simple_repeat Simple_repeat 1 51 0 502 297 25 25 chr9 93093835 93093991 -24768636 - MIR SINE MIR -49 213 60 2363 65 7 0 chr9 93093991 93094285 -24768342 - AluSq SINE Alu -17 296 1 502 297 25 25 chr9 93094285 93094337 -24768290 - MIR SINE MIR -202 60 9 228 368 53 0 chr9 93094657 93094752 -24767875 - L2 LINE L2 -1 3271 3172 * 601 300 125 36 chr9 93094734 93095231 -24767396 - L2 LINE L2 -313 3000 2449 407 223 58 29 chr9 93095285 93095388 -24767239 - L2 LINE L2 0 3313 3208 852 176 0 13 chr9 93095712 93095865 -24766762 + AluSq SINE Alu 138 288 -25 3390 180 29 41 chr9 93095866 93096567 -24766060 + L1MB8 LINE L1 5478 6169 -9 2594 50 0 3 chr9 93096570 93096888 -24765739 - AluYb8 SINE Alu 0 318 2 343 319 132 17 chr9 93096925 93097213 -24765414 - L2 LINE L2 -453 2861 2541 322 245 93 72 chr9 93097213 93097234 -24765393 - L1MC2 LINE L1 -1 6343 6324 2221 120 0 0 chr9 93097234 93097543 -24765084 - AluSx SINE Alu -3 309 1 322 245 93 72 chr9 93097543 93097660 -24764967 - L1MC2 LINE L1 -20 6324 6202 278 346 79 15 chr9 93097670 93097872 -24764755 - L2 LINE L2 -799 2515 2301 213 321 38 8 chr9 93097869 93098000 -24764627 + L2 LINE L2 2851 2985 -287 * 242 336 50 17 chr9 93098574 93098693 -24763934 + L2 LINE L2 3183 3305 -8 602 241 115 5 chr9 93098946 93099141 -24763486 - MIR SINE MIR -4 258 51 326 282 77 17 chr9 93099584 93099701 -24762926 - MIR SINE MIR -118 144 21 216 191 29 59 chr9 93099847 93099915 -24762712 + MIR SINE MIR 40 105 -157 287 266 0 0 chr9 93100414 93100478 -24762149 + L2 LINE L2 3208 3271 -42 318 248 161 9 chr9 93100975 93101110 -24761517 + MIR SINE MIR 16 167 -63 468 321 42 12 chr9 93101145 93101313 -24761314 - MIR SINE MIR -81 181 9 351 254 0 82 chr9 93101885 93102007 -24760620 + MIR SINE MIR 37 148 -60 229 308 77 0 chr9 93102909 93102987 -24759640 + MIR SINE MIR 79 162 -100 328 336 66 0 chr9 93103746 93103883 -24758744 + MIR SINE MIR 113 258 -4 892 207 117 0 chr9 93104925 93105147 -24757480 - MIR SINE MIR 0 262 15 213 264 0 83 chr9 93105190 93105262 -24757365 - L2 LINE L2 -12 3301 3236 481 309 67 0 chr9 93105344 93105493 -24757134 + MIR SINE MIR 29 187 -75 253 293 61 54 chr9 93105668 93105815 -24756812 - L2 LINE L2 -191 3081 2934 410 299 17 0 chr9 93105815 93105932 -24756695 - MER117 DNA MER1_type -7 190 72 456 215 116 41 chr9 93106087 93106259 -24756368 + MER5A DNA MER1_type 3 187 -2 731 281 21 29 chr9 93106843 93107084 -24755543 + MIR SINE MIR 15 258 -4 196 252 110 47 chr9 93107211 93107338 -24755289 - MIR3 SINE MIR -69 139 5 199 245 19 0 chr9 93107693 93107746 -24754881 + MIR SINE MIR 78 131 -77 262 302 31 0 chr9 93107968 93108064 -24754563 - MIR3 SINE MIR -16 192 94 681 286 60 14 chr9 93108733 93108950 -24753677 + MIR SINE MIR 28 254 -8 866 271 45 0 chr9 93108983 93109204 -24753423 - MIR SINE MIR -27 235 5 278 350 61 6 chr9 93109988 93110151 -24752476 - MIR SINE MIR -3 259 88 385 284 216 0 chr9 93110394 93110556 -24752071 + MIR SINE MIR 55 251 -11 1047 158 3 0 chr9 93110559 93110851 -24751776 + (TCCA)n Simple_repeat Simple_repeat 1 293 0 221 272 31 0 chr9 93111182 93111257 -24751370 - MIR SINE MIR -62 146 80 1806 134 28 14 chr9 93112746 93113036 -24749591 - AluSx SINE Alu -18 294 1 332 305 81 58 chr9 93113090 93113313 -24749314 - MIR SINE MIR 0 262 35 375 236 34 0 chr9 93113360 93113449 -24749178 - MIR SINE MIR -149 113 22 333 283 28 0 chr9 93115612 93115718 -24746909 - MIR SINE MIR -62 146 38 238 123 62 62 chr9 93116224 93116289 -24746338 - MIR SINE MIR -34 228 164 2013 86 4 0 chr9 93116301 93116568 -24746059 + AluSx SINE Alu 1 268 -44 734 298 46 13 chr9 93116575 93116813 -24745814 - MIR SINE MIR -1 261 16 497 238 178 5 chr9 93118146 93118331 -24744296 - MIR SINE MIR -25 237 21 437 321 88 19 chr9 93119344 93119559 -24743068 + MIR SINE MIR 25 254 -8 210 293 52 35 chr9 93119770 93119886 -24742741 - MIR SINE MIR -71 137 20 238 294 44 59 chr9 93120134 93120270 -24742357 + MIR3 SINE MIR 10 143 -65 548 353 38 21 chr9 93120450 93120688 -24741939 + MIR SINE MIR 21 262 0 317 288 139 0 chr9 93121889 93122045 -24740582 - MIR SINE MIR -53 209 33 418 281 126 24 chr9 93122231 93122398 -24740229 + MIR SINE MIR 56 239 -23 336 339 8 0 chr9 93122637 93122755 -24739872 + MIR SINE MIR 30 148 -60 289 206 33 22 chr9 93123311 93123403 -24739224 + MIR3 SINE MIR 95 187 -21 486 268 16 88 chr9 93123495 93123689 -24738938 + MIR SINE MIR 12 191 -71 287 245 39 20 chr9 93123711 93123813 -24738814 + L2 LINE L2 2873 2976 -337 269 313 0 0 chr9 93123863 93123959 -24738668 - MIR SINE MIR -21 241 146 359 268 65 8 chr9 93123963 93124086 -24738541 + MIR SINE MIR 2 131 -131 699 293 79 33 chr9 93124147 93124451 -24738176 + L2 LINE L2 2995 3312 -1 1451 219 96 59 chr9 93124524 93124881 -24737746 - MLT1J LTR MaLR 0 511 130 1522 148 59 59 chr9 93124881 93125185 -24737442 + AluJo SINE Alu 1 304 -8 1451 219 96 59 chr9 93125185 93125319 -24737308 - MLT1J LTR MaLR -381 130 2 249 221 36 164 chr9 93125381 93125430 -24737197 - MLT1H LTR MaLR 0 549 495 1900 98 44 7 chr9 93125430 93125740 -24736887 + AluSx SINE Alu 1 320 0 249 221 36 164 chr9 93125740 93125829 -24736798 - MLT1H LTR MaLR -54 495 428 4167 173 46 64 chr9 93125949 93127078 -24735549 - L1MD2 LINE L1 -8 6234 5128 586 183 0 9 chr9 93127149 93127264 -24735363 - L1MC/D LINE L1 -635 5724 5611 430 219 73 0 chr9 93127262 93127385 -24735242 - L1MD2 LINE L1 -1073 5073 4942 * 2218 112 0 3 chr9 93127415 93127727 -24734900 + AluSq SINE Alu 1 311 -2 237 295 95 21 chr9 93127733 93127923 -24734704 + L1MEc LINE L1 1282 1485 -4911 446 211 216 57 chr9 93128910 93129104 -24733523 - MIR SINE MIR -8 254 30 324 260 10 48 chr9 93129163 93129267 -24733360 + MIR SINE MIR 50 149 -59 1862 166 53 34 chr9 93129567 93129947 -24732680 - MLT1B LTR MaLR -3 387 1 218 258 97 77 chr9 93130508 93130663 -24731964 - L2 LINE L2 -190 3082 2925 419 335 44 6 chr9 93131351 93131533 -24731094 - MIR SINE MIR -17 245 57 1122 115 30 0 chr9 93132361 93132526 -24730101 + AluSg/x SINE Alu 135 304 -8 236 118 37 59 chr9 93132775 93132911 -24729716 + (CA)n Simple_repeat Simple_repeat 2 134 0 357 191 34 56 chr9 93132941 93133119 -24729508 + (CA)n Simple_repeat Simple_repeat 1 174 0 240 75 38 19 chr9 93133172 93133225 -24729402 + (CA)n Simple_repeat Simple_repeat 2 55 0 209 189 0 0 chr9 93133625 93133662 -24728965 + (TG)n Simple_repeat Simple_repeat 2 38 0 230 309 166 30 chr9 93134171 93134472 -24728155 - L2 LINE L2 -95 3177 2836 301 263 102 27 chr9 93134693 93134825 -24727802 + MIR SINE MIR 14 150 -58 377 318 46 7 chr9 93135212 93135363 -24727264 - MIR SINE MIR -66 196 40 266 296 151 13 chr9 93135363 93135522 -24727105 + L2 LINE L2 3089 3269 -3 331 263 40 0 chr9 93136328 93136427 -24726200 - MIR SINE MIR -11 251 149 598 271 7 0 chr9 93136486 93136641 -24725986 - MER5B DNA MER1_type -20 158 3 405 153 0 0 chr9 93136673 93136745 -24725882 - L1MA10 LINE L1 -3 6331 6260 4274 142 22 38 chr9 93136753 93136992 -24725635 - L1MB2 LINE L1 -31 6140 5899 2047 113 10 16 chr9 93136992 93137301 -24725326 + AluSx SINE Alu 1 307 -5 4274 142 22 38 chr9 93137301 93137870 -24724757 - L1MB2 LINE L1 -272 5899 5345 635 237 72 39 chr9 93137886 93138211 -24724416 - LTR33 LTR ERVL -114 407 10 188 276 17 17 chr9 93138212 93138270 -24724357 - MIR SINE MIR -86 176 119 181 339 0 0 chr9 93138646 93138708 -24723919 - MIR3 SINE MIR -31 177 116 286 364 25 8 chr9 93139154 93139272 -24723355 - MIR3 SINE MIR 0 208 89 217 297 22 11 chr9 93139588 93139679 -24722948 - MIR3 SINE MIR -8 200 109 718 172 115 0 chr9 93139831 93139988 -24722639 - MER20 DNA MER1_type -6 213 39 337 258 2 11 chr9 93140493 93140597 -24722030 + MIR SINE MIR 44 148 -60 192 97 0 0 chr9 93142059 93142090 -24720537 + (TG)n Simple_repeat Simple_repeat 1 31 0 206 326 106 0 chr9 93142153 93142285 -24720342 - MIR3 SINE MIR -1 207 62 451 255 124 13 chr9 93142605 93142758 -24719869 - MIR SINE MIR -73 189 20 192 258 169 22 chr9 93142880 93142969 -24719658 + MIR3 SINE MIR 74 175 -33 879 228 65 14 chr9 93143055 93143270 -24719357 + MIR SINE MIR 20 245 -17 2111 46 0 4 chr9 93143273 93143532 -24719095 - AluY SINE Alu -14 297 40 200 211 96 0 chr9 93144614 93144666 -24717961 + L2 LINE L2 3168 3224 -89 241 286 155 0 chr9 93145404 93145488 -24717139 - MIR3 SINE MIR -3 205 109 1675 240 102 17 chr9 93146247 93146895 -24715732 - MER21B LTR ERV1 -125 738 1 296 289 224 55 chr9 93147256 93147658 -24714969 + L2 LINE L2 2844 3313 0 2909 187 72 56 chr9 93147716 93148010 -24714617 + L1MB7 LINE L1 5296 5584 -594 2200 108 0 3 chr9 93148010 93148315 -24714312 + AluSx SINE Alu 1 304 -8 2909 187 72 56 chr9 93148315 93148723 -24713904 + L1MB7 LINE L1 5584 5984 -194 490 134 0 49 chr9 93148723 93148805 -24713822 - MADE1 DNA Mariner 0 80 3 2909 187 72 56 chr9 93148805 93148910 -24713717 + L1MB7 LINE L1 5984 6113 -65 2028 117 0 26 chr9 93148910 93149218 -24713409 - AluSx SINE Alu -12 300 1 2909 187 72 56 chr9 93149218 93149275 -24713352 + L1MB7 LINE L1 6113 6168 -10 204 40 0 0 chr9 93149414 93149439 -24713188 + (TG)n Simple_repeat Simple_repeat 2 26 0 356 290 40 0 chr9 93149919 93150043 -24712584 - MIR SINE MIR -66 196 68 325 263 84 0 chr9 93150039 93150134 -24712493 + MIR SINE MIR 94 196 -66 * 222 342 13 0 chr9 93150741 93150820 -24711807 + MIR SINE MIR 74 153 -55 530 237 23 8 chr9 93150883 93151014 -24711613 + MER20B DNA MER1_type 36 168 -615 583 302 49 20 chr9 93151831 93152076 -24710551 + MIR SINE MIR 11 262 0 534 286 20 56 chr9 93152142 93152232 -24710395 - MIR SINE MIR -54 208 116 2333 82 0 3 chr9 93152232 93152538 -24710089 + AluY SINE Alu 1 305 -6 534 286 20 56 chr9 93152538 93152643 -24709984 - MIR SINE MIR -146 116 20 242 268 18 0 chr9 93152663 93152719 -24709908 + L3 LINE CR1 1393 1449 -128 192 200 0 0 chr9 93152933 93152973 -24709654 + (TG)n Simple_repeat Simple_repeat 2 41 0 236 238 95 0 chr9 93153579 93153663 -24708964 + L3b LINE CR1 1277 1368 -215 239 241 17 0 chr9 93154077 93154135 -24708492 - MIR SINE MIR -88 120 62 257 217 0 0 chr9 93154368 93154414 -24708213 + tRNA-Leu-CTG tRNA tRNA 36 81 -5 580 295 170 5 chr9 93154655 93154879 -24707748 + MIR SINE MIR 2 262 0 193 265 0 0 chr9 93155903 93155952 -24706675 + L2 LINE L2 2986 3034 -238 * 375 337 67 60 chr9 93155944 93156208 -24706419 + L2 LINE L2 2817 3086 -186 2600 127 84 0 chr9 93156208 93156602 -24706025 + MSTA LTR MaLR 1 427 -1 375 337 67 60 chr9 93156602 93156738 -24705889 + L2 LINE L2 3086 3220 -52 443 250 56 12 chr9 93156870 93157030 -24705597 - L1ME3A LINE L1 -8 6162 5996 1334 171 101 25 chr9 93157134 93157420 -24705207 - AluJo SINE Alu 0 312 5 931 266 128 34 chr9 93157425 93157958 -24704669 - L1M4 LINE L1 -942 5204 4622 357 82 0 0 chr9 93157961 93158010 -24704617 + (CA)n Simple_repeat Simple_repeat 2 50 0 265 247 151 32 chr9 93158203 93158296 -24704331 - L1M4 LINE L1 -1304 4842 4739 1931 161 7 3 chr9 93158623 93158921 -24703706 + AluJb SINE Alu 2 300 -12 2100 95 92 0 chr9 93158921 93159204 -24703423 + AluSc SINE Alu 1 309 0 2085 150 0 0 chr9 93159434 93159728 -24702899 - AluSx SINE Alu -18 294 1 197 359 109 0 chr9 93159817 93159909 -24702718 + L2 LINE L2 3155 3256 -16 8115 219 55 43 chr9 93159979 93160502 -24702125 - L1ME1 LINE L1 -4 6162 5647 1322 78 11 16 chr9 93160502 93160693 -24701934 + MER30B DNA MER1_type 1 190 0 8115 219 55 43 chr9 93160693 93163717 -24698910 - L1ME1 LINE L1 -519 5647 2590 1840 125 14 54 chr9 93164411 93164762 -24697865 + MER1B DNA MER1_type 1 337 0 350 348 137 5 chr9 93164909 93165113 -24697514 - MIR SINE MIR -12 250 20 450 305 0 21 chr9 93165514 93165655 -24696972 + MIR SINE MIR 16 153 -55 640 287 42 13 chr9 93165845 93166082 -24696545 + L2 LINE L2 2733 2976 -338 897 222 65 134 chr9 93166082 93166575 -24696052 - MLT1H LTR MaLR 0 548 118 2009 122 28 3 chr9 93166575 93166862 -24695765 - AluJo SINE Alu -16 296 3 897 222 65 134 chr9 93166862 93166950 -24695677 - MLT1H LTR MaLR -430 118 26 454 314 66 31 chr9 93167796 93168022 -24694605 - MIR SINE MIR 0 262 29 247 258 22 45 chr9 93168619 93168708 -24693919 - MIR3 SINE MIR -41 167 81 475 248 15 15 chr9 93169030 93169163 -24693464 + MIR3 SINE MIR 14 146 -62 339 219 59 47 chr9 93169249 93169407 -24693220 - MIR3 SINE MIR -78 130 15 393 252 92 0 chr9 93169612 93169731 -24692896 - L3 LINE CR1 -101 1476 1347 221 319 166 24 chr9 93170059 93170186 -24692441 + MIR SINE MIR 16 160 -58 245 214 36 0 chr9 93171166 93171222 -24691405 - MER5A DNA MER1_type -119 70 13 1661 151 12 12 chr9 93171408 93171667 -24690960 + AluJo SINE Alu 39 297 -15 272 295 33 16 chr9 93171667 93171789 -24690838 + L1MC4 LINE L1 7166 7289 -753 315 319 126 49 chr9 93171948 93172400 -24690227 + L1MC4 LINE L1 7519 8005 -37 261 0 0 0 chr9 93172425 93172454 -24690173 + (CA)n Simple_repeat Simple_repeat 2 30 0 2175 116 0 38 chr9 93172464 93172783 -24689844 + AluSg SINE Alu 1 307 -3 607 305 11 5 chr9 93173071 93173258 -24689369 + MIR SINE MIR 12 199 -63 288 229 24 12 chr9 93173635 93173718 -24688909 + MLT1I LTR MaLR 324 407 -2 407 229 7 83 chr9 93174236 93174380 -24688247 + L2 LINE L2 2914 3046 -226 409 248 52 72 chr9 93174855 93175008 -24687619 - L2 LINE L2 -1 3312 3163 2437 93 0 0 chr9 93175019 93175319 -24687308 + AluSx SINE Alu 1 300 -12 706 228 147 22 chr9 93175449 93175673 -24686954 - MIR SINE MIR 0 262 11 187 238 0 0 chr9 93175952 93176015 -24686612 - L2 LINE L2 -215 3057 2995 211 295 219 0 chr9 93176238 93176448 -24686179 + L2 LINE L2 2804 3059 -254 472 318 11 11 chr9 93176705 93176881 -24685746 + (CA)n Simple_repeat Simple_repeat 1 176 0 202 373 34 23 chr9 93176809 93176986 -24685641 + (CATG)n Simple_repeat Simple_repeat 1 179 0 * 268 305 28 35 chr9 93176935 93176988 -24685639 + (CATATA)n Simple_repeat Simple_repeat 2 54 -87 234 0 0 0 chr9 93176988 93177014 -24685613 + (CA)n Simple_repeat Simple_repeat 1 26 0 268 305 28 35 chr9 93177014 93177101 -24685526 + (CATATA)n Simple_repeat Simple_repeat 54 141 0 333 186 0 0 chr9 93177653 93177723 -24684904 + GA-rich Low_complexity Low_complexity 1 70 0 379 219 12 0 chr9 93177734 93177816 -24684811 - MER81 DNA DNA -30 84 2 188 257 208 40 chr9 93178266 93178367 -24684260 - MER5A DNA MER1_type -2 187 70 2635 123 38 25 chr9 93178386 93178864 -24683763 - MER31A LTR ERV1 -1 484 1 405 293 186 50 chr9 93179866 93180204 -24682423 + HAL1b LINE L1 345 633 -951 726 254 51 34 chr9 93180255 93180491 -24682136 - MIR SINE MIR -10 252 13 468 268 11 31 chr9 93180519 93180757 -24681870 + HAL1b LINE L1 831 932 -652 2262 104 3 7 chr9 93180759 93181067 -24681560 + AluSp SINE Alu 5 311 -2 2330 102 0 0 chr9 93181652 93181945 -24680682 - AluSx SINE Alu -17 295 3 317 346 84 0 chr9 93183990 93184203 -24678424 - MIR SINE MIR -10 252 18 280 193 0 0 chr9 93184652 93184709 -24677918 + MIR3 SINE MIR 115 171 -37 375 340 123 8 chr9 93184882 93185135 -24677492 + L2 LINE L2 2910 3191 -81 234 0 0 0 chr9 93185256 93185282 -24677345 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 644 208 8 0 chr9 93185286 93185416 -24677211 + FLAM_C SINE Alu 2 132 -11 901 261 10 0 chr9 93185975 93186182 -24676445 + MIR SINE MIR 4 212 -50 342 317 131 35 chr9 93186230 93186489 -24676138 - L2 LINE L2 -72 3241 2958 2491 61 0 3 chr9 93186543 93186838 -24675789 - AluY SINE Alu -15 296 3 2244 93 10 17 chr9 93186840 93187141 -24675486 - AluSp SINE Alu -14 299 1 250 188 24 47 chr9 93187794 93187879 -24674748 + A-rich Low_complexity Low_complexity 3 85 0 947 151 12 0 chr9 93188050 93188222 -24674405 + CT-rich Low_complexity Low_complexity 2 175 0 180 0 0 0 chr9 93188220 93188240 -24674387 + (TC)n Simple_repeat Simple_repeat 1 20 0 * 2079 125 14 3 chr9 93188240 93188537 -24674090 - AluSc SINE Alu -9 300 1 272 346 0 19 chr9 93188677 93188781 -24673846 + MIR SINE MIR 28 129 -79 1132 252 103 29 chr9 93188796 93189212 -24673415 + MLT1J2 LTR MaLR 1 447 -3 261 365 115 5 chr9 93189380 93189572 -24673055 + L2 LINE L2 2635 2847 -467 210 333 24 32 chr9 93189843 93189954 -24672673 + L2 LINE L2 3183 3294 -19 1782 143 64 9 chr9 93189954 93190283 -24672344 - MER7A DNA MER2_type -1 345 1 210 333 24 32 chr9 93190283 93190294 -24672333 + L2 LINE L2 3294 3304 -9 2460 87 0 3 chr9 93191920 93192232 -24670395 - AluY SINE Alu 0 311 1 1215 140 6 0 chr9 93192257 93192451 -24670176 + AluSg/x SINE Alu 112 306 0 208 299 93 21 chr9 93192911 93193008 -24669619 + L2 LINE L2 3116 3219 -53 2097 119 3 14 chr9 93193323 93193617 -24669010 + AluSq SINE Alu 1 291 -22 300 53 0 0 chr9 93193620 93193658 -24668969 + (CAAAA)n Simple_repeat Simple_repeat 4 41 0 290 171 73 12 chr9 93194094 93194176 -24668451 - MLT1K LTR MaLR -11 577 491 2168 129 3 0 chr9 93194255 93194550 -24668077 + AluSx SINE Alu 1 296 -16 1299 256 67 61 chr9 93194740 93195167 -24667460 - MLT1H LTR MaLR 0 549 117 2343 117 0 0 chr9 93195167 93195467 -24667160 + AluSx SINE Alu 1 300 -12 1299 256 67 61 chr9 93195467 93195563 -24667064 - MLT1H LTR MaLR -432 117 23 422 321 109 17 chr9 93195755 93196057 -24666570 - MLT1K LTR MaLR -131 457 128 363 266 106 9 chr9 93196717 93196830 -24665797 - L2 LINE L2 0 3313 3190 423 239 77 0 chr9 93196830 93196947 -24665680 + MER103 DNA DNA 39 164 -2 224 253 253 33 chr9 93196968 93197118 -24665509 - MIR3 SINE MIR -3 205 23 662 164 25 28 chr9 93197154 93197661 -24664966 + CT-rich Low_complexity Low_complexity 1 505 0 253 254 9 82 chr9 93198139 93198249 -24664378 - MIR SINE MIR -71 137 36 346 287 15 33 chr9 93198456 93198617 -24664010 - MIR3 SINE MIR -54 154 7 2393 71 3 49 chr9 93198680 93199005 -24663622 + AluY SINE Alu 1 310 -1 21 0 0 0 chr9 93199597 93199618 -24663009 + AT_rich Low_complexity Low_complexity 1 21 0 465 274 75 7 chr9 93200045 93200191 -24662436 - MIR SINE MIR -66 196 41 418 250 16 39 chr9 93200250 93200378 -24662249 + MIR3 SINE MIR 82 206 -2 441 281 54 30 chr9 93200500 93200667 -24661960 - MIR SINE MIR -44 218 48 307 236 118 36 chr9 93200745 93200855 -24661772 + L2 LINE L2 3150 3268 -4 218 130 0 56 chr9 93201380 93201434 -24661193 + (GAAAA)n Simple_repeat Simple_repeat 1 51 0 467 291 25 26 chr9 93202096 93202249 -24660378 - MIR SINE MIR -52 210 60 2485 65 7 0 chr9 93202249 93202543 -24660084 - AluSq SINE Alu -17 296 1 467 291 25 26 chr9 93202543 93202595 -24660032 - MIR SINE MIR -202 60 9 210 347 53 0 chr9 93202915 93203010 -24659617 - L2 LINE L2 -1 3312 3213 527 295 164 44 chr9 93203032 93203489 -24659138 - L2 LINE L2 -354 2960 2449 382 223 58 29 chr9 93203543 93203646 -24658981 - L2 LINE L2 0 3313 3208 1273 180 0 52 chr9 93203879 93204146 -24658481 - AluJo SINE Alu 0 312 60 393 307 49 53 chr9 93204370 93204614 -24658013 - L2 LINE L2 -735 2579 2337 2444 96 21 19 chr9 93204801 93205175 -24657452 + THE1C LTR MaLR 1 375 0 344 308 91 7 chr9 93205182 93205325 -24657302 + L1ME4a LINE L1 5949 6103 -18 384 183 34 40 chr9 93206101 93206276 -24656351 + GA-rich Low_complexity Low_complexity 1 174 0 244 169 40 45 chr9 93206302 93206479 -24656148 + GA-rich Low_complexity Low_complexity 3 178 0 191 226 0 16 chr9 93206510 93206572 -24656055 + G-rich Low_complexity Low_complexity 4 64 0 431 315 95 18 chr9 93207453 93207617 -24655010 + MIR SINE MIR 17 190 -62 220 322 124 8 chr9 93207644 93207765 -24654862 - MIR SINE MIR -54 154 20 336 322 109 16 chr9 93208043 93208226 -24654401 + MIR SINE MIR 9 208 -54 223 195 0 0 chr9 93208764 93208805 -24653822 + (TTA)n Simple_repeat Simple_repeat 2 42 0 384 296 82 6 chr9 93208825 93208984 -24653643 - MER117 DNA MER1_type -26 171 1 195 354 13 0 chr9 93209731 93209810 -24652817 + MIR SINE MIR 74 153 -109 793 204 5 91 chr9 93209962 93210123 -24652504 + MER3 DNA MER1_type 1 140 -69 2404 86 3 0 chr9 93210123 93210424 -24652203 - AluSp SINE Alu -7 306 5 793 204 5 91 chr9 93210424 93210483 -24652144 + MER3 DNA MER1_type 140 202 -7 242 250 305 16 chr9 93210616 93210744 -24651883 - MIR3 SINE MIR -32 176 12 2563 59 3 0 chr9 93210934 93211240 -24651387 - AluY SINE Alu -4 307 1 251 239 14 0 chr9 93211945 93212016 -24650611 + MER117 DNA MER1_type 100 171 -26 24 85 0 0 chr9 93212080 93212139 -24650488 + AT_rich Low_complexity Low_complexity 1 59 0 334 212 68 116 chr9 93212310 93212456 -24650171 + L2 LINE L2 3161 3299 -14 4473 160 75 8 chr9 93212461 93213579 -24649048 + L1MB8 LINE L1 4989 6178 0 327 49 0 0 chr9 93214111 93214152 -24648475 + (CA)n Simple_repeat Simple_repeat 2 42 0 372 324 8 11 chr9 93214187 93214456 -24648171 + (CA)n Simple_repeat Simple_repeat 1 267 0 2235 97 120 49 chr9 93215472 93215641 -24646986 + MSTA LTR MaLR 1 156 -272 2300 124 7 0 chr9 93215641 93215947 -24646680 + AluSx SINE Alu 1 308 -4 2235 97 120 49 chr9 93215947 93216102 -24646525 + MSTA LTR MaLR 156 360 -68 2022 149 0 13 chr9 93216102 93216417 -24646210 - AluSx SINE Alu -1 311 1 2235 97 120 49 chr9 93216417 93216482 -24646145 + MSTA LTR MaLR 360 419 -9 1002 253 128 27 chr9 93216885 93217095 -24645532 + LTR16C LTR ERVL 88 275 -216 1743 154 133 18 chr9 93217095 93217477 -24645150 + MSTA LTR MaLR 1 426 -2 1002 253 128 27 chr9 93217477 93217633 -24644994 + LTR16C LTR ERVL 275 491 0 391 306 0 86 chr9 93217745 93217931 -24644696 - MIR SINE MIR -33 229 60 2418 91 0 3 chr9 93217933 93218242 -24644385 + AluSx SINE Alu 5 312 0 326 292 22 36 chr9 93218569 93218706 -24643921 + L2 LINE L2 3167 3301 -12 542 227 47 0 chr9 93219892 93220020 -24642607 + MLT1G1 LTR MaLR 1 134 -461 312 229 66 41 chr9 93220018 93220140 -24642487 + MLT1H1 LTR MaLR 100 224 -306 * 415 246 120 0 chr9 93220216 93220358 -24642269 + MLT1H1 LTR MaLR 397 555 0 334 310 76 8 chr9 93220362 93220499 -24642128 - MIR SINE MIR -68 140 41 888 113 8 23 chr9 93220499 93220632 -24641995 + FLAM_C SINE Alu 1 131 -2 334 310 76 8 chr9 93220632 93220645 -24641982 - MIR SINE MIR -167 41 30 721 221 23 6 chr9 93220952 93221124 -24641503 - MER5B DNA MER1_type 0 178 4 222 91 0 0 chr9 93221278 93221311 -24641316 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 1402 181 71 39 chr9 93221941 93222222 -24640405 + AluJo SINE Alu 3 292 -20 573 203 13 72 chr9 93222290 93222443 -24640184 - MER5B DNA MER1_type -34 144 1 1098 275 68 53 chr9 93222443 93223062 -24639565 + L1MC4a LINE L1 4811 4972 -1174 2074 146 27 11 chr9 93223062 93223431 -24639196 + THE1C LTR MaLR 1 375 0 1098 275 68 53 chr9 93223431 93223870 -24638757 + L1MC4a LINE L1 4972 5403 -743 2118 133 0 26 chr9 93224079 93224388 -24638239 + AluSx SINE Alu 2 302 -10 217 291 0 47 chr9 93224491 93224577 -24638050 + MIR SINE MIR 41 122 -86 1190 210 72 70 chr9 93225619 93225990 -24636637 + MLT2B1 LTR ERVL 105 374 -40 233 232 0 0 chr9 93226058 93226114 -24636513 + MLT2B1 LTR ERVL 464 519 -1 353 258 11 0 chr9 93226394 93226487 -24636140 - MIR SINE MIR -118 144 51 2177 139 27 33 chr9 93226532 93226898 -24635729 + THE1B LTR MaLR 1 364 0 424 206 138 70 chr9 93227011 93227356 -24635271 + MLT1F LTR MaLR 82 450 0 315 295 110 60 chr9 93227455 93227791 -24634836 + MLT1I LTR MaLR 31 383 -26 285 29 0 0 chr9 93228360 93228394 -24634233 + (GA)n Simple_repeat Simple_repeat 1 34 0 197 311 58 10 chr9 93228613 93228716 -24633911 - L2 LINE L2 -339 2974 2867 459 273 103 0 chr9 93228759 93228924 -24633703 + MIR SINE MIR 10 191 -71 233 330 51 8 chr9 93229094 93229212 -24633415 + MIR SINE MIR 20 142 -120 312 305 25 17 chr9 93229861 93229982 -24632645 + MIR SINE MIR 44 164 -65 207 304 0 14 chr9 93231282 93231351 -24631276 - MIR SINE MIR -31 231 164 1417 158 95 4 chr9 93231729 93231970 -24630657 + AluSx SINE Alu 5 267 -45 1674 130 128 68 chr9 93232333 93232701 -24629926 - MSTD LTR MaLR -6 390 1 666 284 77 34 chr9 93232721 93232821 -24629806 + L1ME4a LINE L1 5482 5576 -545 2021 160 0 0 chr9 93232821 93233121 -24629506 + AluSx SINE Alu 1 300 -12 666 284 77 34 chr9 93233121 93233498 -24629129 + L1ME4a LINE L1 5576 5980 -141 189 107 0 0 chr9 93233546 93233574 -24629053 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 382 272 22 77 chr9 93233654 93233966 -24628661 + L1MB5 LINE L1 2968 3262 -2884 2371 142 26 47 chr9 93235253 93235675 -24626952 - MLT2D LTR ERVL 0 414 2 635 298 55 18 chr9 93235691 93235909 -24626718 - LTR16A LTR ERVL -47 403 178 344 242 0 0 chr9 93235920 93235986 -24626641 - MLT1A1 LTR MaLR -262 103 38 1158 221 12 24 chr9 93236003 93236256 -24626371 + MLT1A1 LTR MaLR 116 365 0 481 283 79 6 chr9 93236347 93236524 -24626103 - MIR SINE MIR -41 221 32 695 329 0 0 chr9 93236679 93236889 -24625738 - MIR SINE MIR -51 211 2 2360 90 7 0 chr9 93237006 93237305 -24625322 + AluY SINE Alu 2 302 -9 441 344 106 7 chr9 93238263 93238667 -24623960 + L2 LINE L2 2342 2785 -529 1446 226 33 30 chr9 93238668 93239037 -24623590 + MLT1A2 LTR MaLR 1 464 -3 437 336 45 4 chr9 93239291 93239535 -24623092 + LTR16C LTR ERVL 238 491 0 313 338 90 20 chr9 93239548 93239749 -24622878 + L2 LINE L2 3058 3272 0 966 176 45 0 chr9 93239762 93239938 -24622689 + L1MB5 LINE L1 3943 4126 -2020 1608 136 9 0 chr9 93239948 93240169 -24622458 + AluSx SINE Alu 23 245 -67 1299 101 74 0 chr9 93240202 93240419 -24622208 - L1MA8 LINE L1 -3 6288 6056 23 0 0 0 chr9 93240430 93240453 -24622174 + AT_rich Low_complexity Low_complexity 1 23 0 863 205 0 6 chr9 93240453 93240614 -24622013 - FRAM SINE Alu -23 153 1 4478 181 35 5 chr9 93240627 93242473 -24620154 + L1MB5 LINE L1 4156 6174 0 1940 154 3 7 chr9 93242480 93242778 -24619849 + AluJb SINE Alu 1 297 -15 4152 17 0 0 chr9 93242951 93243416 -24619211 - L1PA3 LINE L1 0 6155 5691 280 264 110 11 chr9 93243895 93243986 -24618641 + MIR SINE MIR 33 132 -76 307 281 75 31 chr9 93244020 93244180 -24618447 + L1ME4a LINE L1 5615 5781 -340 480 218 60 8 chr9 93244271 93244404 -24618223 + L1ME4a LINE L1 5970 6109 -12 193 28 0 56 chr9 93244480 93244516 -24618111 + (AAATG)n Simple_repeat Simple_repeat 4 37 0 2540 83 3 0 chr9 93244725 93245037 -24617590 - AluSp SINE Alu 0 313 1 875 152 0 0 chr9 93245204 93245336 -24617291 + FLAM_C SINE Alu 2 133 0 192 125 0 0 chr9 93245543 93245575 -24617052 + (TG)n Simple_repeat Simple_repeat 1 32 0 1668 159 22 11 chr9 93245578 93245855 -24616772 - AluJb SINE Alu -32 280 1 330 224 21 56 chr9 93246095 93246238 -24616389 - HAL1b LINE L1 -296 1052 915 347 263 128 45 chr9 93246238 93246481 -24616146 - L1MEc LINE L1 -4093 2732 2470 1422 164 131 54 chr9 93246708 93247043 -24615584 - MLT1A1 LTR MaLR -2 363 3 259 295 95 21 chr9 93247283 93247473 -24615154 - L1MEc LINE L1 -4911 1914 1711 2417 98 0 0 chr9 93247479 93247786 -24614841 - AluSq SINE Alu -2 311 5 1991 117 4 0 chr9 93247936 93248201 -24614426 + AluSx SINE Alu 31 296 -16 226 232 0 0 chr9 93248260 93248316 -24614311 + L1MC4 LINE L1 6648 6703 -1339 269 263 6 70 chr9 93248319 93248431 -24614196 - L1MEc LINE L1 -5065 1569 1470 1596 175 23 40 chr9 93248431 93248734 -24613893 - AluJb SINE Alu -10 302 5 269 263 6 70 chr9 93248734 93248792 -24613835 - L1MEc LINE L1 -5164 1470 1410 2480 173 14 42 chr9 93249018 93249538 -24613089 - L1MB7 LINE L1 -17 6167 5663 929 184 8 33 chr9 93249538 93249774 -24612853 - L1MEc LINE L1 -5147 1395 1164 1412 198 0 12 chr9 93249776 93250068 -24612559 + AluJb SINE Alu 42 330 0 4806 181 44 77 chr9 93250070 93250488 -24612139 - L1MEc LINE L1 -5364 1178 748 207 69 0 0 chr9 93250488 93250517 -24612110 + (TG)n Simple_repeat Simple_repeat 1 29 0 4806 181 44 77 chr9 93250517 93251253 -24611374 - L1MEc LINE L1 -5794 748 62 327 230 27 0 chr9 93251983 93252057 -24610570 - HAL1b LINE L1 -415 933 858 2135 144 0 26 chr9 93253149 93253495 -24609132 + MER1B DNA MER1_type 1 337 0 264 274 48 0 chr9 93253911 93253995 -24608632 - MLT1J LTR MaLR -1 510 423 569 265 0 26 chr9 93254178 93254329 -24608298 - MLT1J LTR MaLR -278 233 87 527 217 78 16 chr9 93254833 93254962 -24607665 - FLAM_C SINE Alu -5 138 2 181 223 121 102 chr9 93255491 93255657 -24606970 - MIR SINE MIR -83 179 11 2240 93 0 26 chr9 93256133 93256443 -24606184 - AluSc SINE Alu -2 307 6 213 213 0 0 chr9 93257166 93257213 -24605414 + CT-rich Low_complexity Low_complexity 4 50 0 856 138 6 22 chr9 93257214 93257395 -24605232 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 254 79 0 26 chr9 93257395 93257433 -24605194 + (TTCC)n Simple_repeat Simple_repeat 1 37 0 545 184 9 0 chr9 93257433 93257547 -24605080 + CT-rich Low_complexity Low_complexity 1 115 0 953 140 51 0 chr9 93257547 93257704 -24604923 - AluSg/x SINE Alu -11 301 137 316 242 44 22 chr9 93257858 93257949 -24604678 - MER5A DNA MER1_type -80 109 17 861 254 43 0 chr9 93258392 93258601 -24604026 + MIR SINE MIR 28 245 -17 310 268 84 21 chr9 93258628 93258770 -24603857 - MIR SINE MIR -90 172 22 244 364 35 0 chr9 93258782 93258925 -24603702 + (CCCCAA)n Simple_repeat Simple_repeat 2 149 0 373 349 23 0 chr9 93258948 93259123 -24603504 + (CCCCAA)n Simple_repeat Simple_repeat 1 179 0 382 311 16 44 chr9 93259141 93259405 -24603222 + (CCCCAA)n Simple_repeat Simple_repeat 1 256 0 273 374 0 0 chr9 93259426 93259573 -24603054 + (CCCCAA)n Simple_repeat Simple_repeat 3 149 0 347 321 11 43 chr9 93259591 93259775 -24602852 + (CCCCAA)n Simple_repeat Simple_repeat 2 179 0 359 317 11 44 chr9 93259796 93259979 -24602648 + (CCCCAA)n Simple_repeat Simple_repeat 3 179 0 323 352 14 0 chr9 93259997 93260142 -24602485 + (CCCCAA)n Simple_repeat Simple_repeat 2 148 0 197 391 47 8 chr9 93260535 93260663 -24601964 + MIR3 SINE MIR 3 135 -73 457 284 7 14 chr9 93260697 93260838 -24601789 - MIR SINE MIR -110 152 13 1021 118 0 0 chr9 93260963 93261099 -24601528 - AluSg/x SINE Alu -25 287 152 755 241 133 19 chr9 93262011 93262497 -24600130 + L2 LINE L2 2638 3171 -142 293 284 157 29 chr9 93263231 93263435 -24599192 + L3 LINE CR1 1083 1312 -265 338 268 27 9 chr9 93263462 93263574 -24599053 - MER117 DNA MER1_type -26 171 58 317 286 216 4 chr9 93264860 93265101 -24597526 + L1ME4a LINE L1 5649 5940 -181 231 254 175 46 chr9 93266154 93266371 -24596256 + MIR SINE MIR 5 249 -13 255 271 0 0 chr9 93266431 93266501 -24596126 - L1MC4 LINE L1 -59 7983 7914 231 225 25 25 chr9 93266501 93266581 -24596046 + (TCTA)n Simple_repeat Simple_repeat 2 81 0 795 234 135 26 chr9 93266598 93266993 -24595634 - L1MC4 LINE L1 -149 7893 7357 211 204 23 0 chr9 93267118 93267162 -24595465 + CT-rich Low_complexity Low_complexity 2 46 0 408 323 41 46 chr9 93267235 93267671 -24594956 - L1MEc LINE L1 -1173 5042 4609 347 301 120 26 chr9 93267666 93268241 -24594386 - L1MEc LINE L1 -2235 3980 3352 * 615 316 82 43 chr9 93268297 93268601 -24594026 - L1MEc LINE L1 -3372 2843 2552 2045 149 56 12 chr9 93268601 93268923 -24593704 + MER1B DNA MER1_type 1 336 -1 615 316 82 43 chr9 93268923 93269300 -24593327 - L1MEc LINE L1 -3663 2552 2173 532 287 93 61 chr9 93269637 93269845 -24592782 - HAL1b LINE L1 -703 645 445 1158 168 105 113 chr9 93269845 93270244 -24592383 + MSTD LTR MaLR 1 396 0 532 287 93 61 chr9 93270244 93270624 -24592003 - HAL1b LINE L1 -903 445 38 205 189 113 19 chr9 93271788 93271841 -24590786 - L2 LINE L2 -2 3270 3213 186 327 112 19 chr9 93271930 93272037 -24590590 + L2 LINE L2 2854 2970 -343 414 279 50 62 chr9 93272095 93272335 -24590292 + L2 LINE L2 3075 3311 -2 310 287 53 0 chr9 93272318 93272412 -24590215 - MIR SINE MIR -66 142 44 * 306 295 96 77 chr9 93272732 93273159 -24589468 - L2 LINE L2 -22 3250 2816 356 286 178 5 chr9 93273233 93273418 -24589209 - L3 LINE CR1 -5 1572 1356 224 254 56 14 chr9 93274275 93274346 -24588281 - MIR SINE MIR -97 111 38 287 279 23 12 chr9 93274809 93274895 -24587732 - MIR SINE MIR -152 110 24 796 164 86 7 chr9 93275035 93275187 -24587440 + FRAM SINE Alu 1 161 -15 261 0 0 0 chr9 93275187 93275204 -24587423 + (CA)n Simple_repeat Simple_repeat 1 46 0 261 0 0 0 chr9 93275204 93275233 -24587394 + (CA)n Simple_repeat Simple_repeat 2 30 0 317 181 284 9 chr9 93276642 93276758 -24585869 - MIR SINE MIR -14 248 101 1165 144 35 0 chr9 93276791 93276965 -24585662 - MLT1A1 LTR MaLR 0 365 186 903 181 108 27 chr9 93276965 93277224 -24585403 + L1MC3 LINE L1 6819 7098 -687 330 260 20 10 chr9 93277225 93277325 -24585302 + MLT1F1 LTR MaLR 37 137 -430 615 107 0 0 chr9 93277327 93277411 -24585216 + L1MC3 LINE L1 7200 7283 -502 2098 148 70 6 chr9 93277411 93277769 -24584858 - MSTA LTR MaLR 0 428 48 448 116 24 21 chr9 93278666 93278744 -24583883 - MSTA LTR MaLR -371 57 1 2291 173 52 44 chr9 93278744 93279247 -24583380 + L1MC3 LINE L1 7279 7785 0 711 240 29 45 chr9 93279240 93279486 -24583141 + L1ME4a LINE L1 1467 1708 -4832 * 2072 281 99 49 chr9 93279627 93281792 -24580835 + L1ME4a LINE L1 3607 5886 -674 326 120 0 0 chr9 93281792 93281842 -24580785 + LTR33 LTR ERVL 2 51 -470 1033 274 97 12 chr9 93281846 93282186 -24580441 + LTR33 LTR ERVL 153 521 0 572 329 68 27 chr9 93282188 93282553 -24580074 + L1ME4a LINE L1 5888 6267 -297 2079 131 3 3 chr9 93283231 93283536 -24579091 + AluSx SINE Alu 1 305 -7 447 214 12 0 chr9 93283649 93283733 -24578894 + MER58B DNA MER1_type 257 341 0 544 292 146 40 chr9 93283738 93284320 -24578307 - L2 LINE L2 -810 2504 1861 1346 120 5 14 chr9 93285428 93285644 -24576983 + L1PA13 LINE L1 5950 6163 0 2259 122 39 30 chr9 93285952 93286313 -24576314 + THE1B LTR MaLR 1 364 0 992 240 123 27 chr9 93286636 93286936 -24575691 - MLT1I LTR MaLR -1 408 80 241 309 157 22 chr9 93287928 93288106 -24574521 - L1MC/D LINE L1 -2009 5799 5598 225 0 0 0 chr9 93289162 93289187 -24573440 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 2036 123 0 14 chr9 93289187 93289471 -24573156 - AluSx SINE Alu -32 280 1 2176 222 63 45 chr9 93289480 93290078 -24572549 - MLT1E2 LTR MaLR 0 626 18 356 233 44 107 chr9 93290753 93290959 -24571668 - MIR3 SINE MIR -15 193 1 753 190 145 20 chr9 93291059 93291259 -24571368 + MIR SINE MIR 4 228 -34 1112 226 92 50 chr9 93291460 93291849 -24570778 - Charlie8 DNA MER1_type -2141 276 1 377 254 54 21 chr9 93292341 93292553 -24570074 + L1MB7 LINE L1 5702 5823 -298 1695 77 0 14 chr9 93292629 93292849 -24569778 + AluY SINE Alu 84 300 -11 228 235 20 69 chr9 93292985 93293087 -24569540 + L1ME4a LINE L1 6361 6457 -58 489 229 19 6 chr9 93293098 93293255 -24569372 + GA-rich Low_complexity Low_complexity 2 160 0 2027 134 10 10 chr9 93293438 93293744 -24568883 + AluSg SINE Alu 1 306 -4 576 224 93 138 chr9 93294346 93294796 -24567831 + MLT1K LTR MaLR 147 576 -12 343 314 19 0 chr9 93294847 93294952 -24567675 + L2 LINE L2 3166 3272 0 211 150 25 0 chr9 93296185 93296225 -24566402 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 2198 104 10 7 chr9 93296441 93296738 -24565889 + AluSx SINE Alu 1 298 -14 261 346 10 0 chr9 93296942 93297046 -24565581 + L3 LINE CR1 1374 1478 -99 263 327 10 10 chr9 93297160 93297264 -24565363 + MIR SINE MIR 12 115 -147 445 221 116 68 chr9 93297374 93297809 -24564818 + MLT1G LTR MaLR 12 584 -6 267 282 94 0 chr9 93298585 93298670 -24563957 + L2 LINE L2 2666 2758 -556 783 141 101 144 chr9 93298705 93298991 -24563636 - MLT1B LTR MaLR 0 374 113 867 143 0 0 chr9 93299024 93299143 -24563484 - FRAM SINE Alu -64 112 1 1280 152 172 35 chr9 93299148 93299404 -24563223 - AluJo SINE Alu -21 291 1 547 151 63 56 chr9 93299404 93299530 -24563097 - MLT1B LTR MaLR -263 127 1 557 298 106 5 chr9 93299635 93299833 -24562794 + MIR SINE MIR 45 262 0 257 313 104 18 chr9 93300900 93301063 -24561564 + L3 LINE CR1 1306 1482 -95 539 220 120 7 chr9 93301703 93301853 -24560774 - MIR SINE MIR -82 180 14 506 267 136 0 chr9 93301924 93302118 -24560509 - MIR SINE MIR -12 250 32 1242 183 72 109 chr9 93302258 93302663 -24559964 + MLT1B LTR MaLR 1 390 0 595 225 14 3 chr9 93302735 93303033 -24559594 + (TGGA)n Simple_repeat Simple_repeat 1 301 0 576 270 39 9 chr9 93304489 93304722 -24557905 - MIR SINE MIR -10 252 13 431 288 77 17 chr9 93304729 93304962 -24557665 + MIR SINE MIR 4 250 -12 398 230 0 9 chr9 93304979 93305092 -24557535 + GA-rich Low_complexity Low_complexity 2 113 0 281 214 57 0 chr9 93306303 93306373 -24556254 + MER116 DNA Mariner 6 79 -1 536 311 72 14 chr9 93306409 93306618 -24556009 - MIR SINE MIR -17 245 25 424 242 64 36 chr9 93307217 93307416 -24555211 + MIR SINE MIR 12 214 -48 248 120 20 0 chr9 93308316 93308366 -24554261 + CT-rich Low_complexity Low_complexity 4 54 0 393 242 131 10 chr9 93308368 93308524 -24554103 + MIR SINE MIR 20 196 -62 275 230 35 0 chr9 93308658 93308771 -24553856 + CT-rich Low_complexity Low_complexity 3 119 0 186 315 29 84 chr9 93308817 93309090 -24553537 - L2 LINE L2 -96 3176 2919 299 197 77 51 chr9 93309888 93310005 -24552622 - MIR SINE MIR -119 143 24 259 228 26 70 chr9 93310083 93310197 -24552430 - MIR SINE MIR -77 131 23 446 209 97 100 chr9 93310596 93310857 -24551770 - MLT1H LTR MaLR 0 549 212 2169 115 7 0 chr9 93310857 93311152 -24551475 + AluSx SINE Alu 1 297 -15 446 209 97 100 chr9 93311152 93311240 -24551387 - MLT1H LTR MaLR -337 212 125 378 265 26 34 chr9 93311417 93311534 -24551093 + MIR SINE MIR 132 247 -15 375 178 267 0 chr9 93311545 93311635 -24550992 - MER81 DNA DNA 0 114 1 1095 143 0 12 chr9 93311989 93312150 -24550477 - AluJb SINE Alu -17 295 137 527 317 18 6 chr9 93313121 93313288 -24549339 + MIR SINE MIR 50 218 -44 268 319 0 14 chr9 93313293 93313365 -24549262 - L2 LINE L2 -2 3311 3241 634 245 63 0 chr9 93313908 93314067 -24548560 - MER5A DNA MER1_type -4 185 17 434 173 39 55 chr9 93314079 93314170 -24548457 - MIR SINE MIR -113 149 59 653 174 9 0 chr9 93314170 93314279 -24548348 + MER81 DNA DNA 5 114 0 434 173 39 55 chr9 93314279 93314314 -24548313 - MIR SINE MIR -203 59 25 559 241 123 20 chr9 93314377 93314580 -24548047 - MIR SINE MIR -2 260 37 393 331 111 0 chr9 93314634 93314806 -24547821 + MIR SINE MIR 3 193 -69 327 143 0 0 chr9 93314896 93314952 -24547675 + MLT2D LTR ERVL 278 333 -81 778 84 28 34 chr9 93315000 93315179 -24547448 + (TCTA)n Simple_repeat Simple_repeat 1 178 0 249 111 37 37 chr9 93315198 93315279 -24547348 + (TCTA)n Simple_repeat Simple_repeat 1 81 0 745 90 39 30 chr9 93315319 93315554 -24547073 + (TCTA)n Simple_repeat Simple_repeat 1 237 0 270 150 0 0 chr9 93315557 93315623 -24547004 + MLT2C1 LTR ERVL 357 397 0 282 295 166 26 chr9 93315820 93316300 -24546327 - L2 LINE L2 0 3272 2715 451 296 53 47 chr9 93317029 93317198 -24545429 + L3 LINE CR1 1346 1515 -62 1718 177 3 17 chr9 93317203 93317522 -24545105 - AluSx SINE Alu 0 315 1 1709 174 17 13 chr9 93318171 93318470 -24544157 + AluJb SINE Alu 1 300 -12 189 222 0 0 chr9 93318579 93318615 -24544012 - L2 LINE L2 -73 3199 3164 221 176 35 59 chr9 93318649 93318734 -24543893 + L2 LINE L2 3177 3259 -13 189 0 0 0 chr9 93318736 93318757 -24543870 + (TGAA)n Simple_repeat Simple_repeat 3 23 0 2140 122 0 0 chr9 93318845 93319139 -24543488 + AluSg SINE Alu 1 294 -16 262 299 77 26 chr9 93319859 93319976 -24542651 + MIR SINE MIR 22 144 -64 585 257 28 52 chr9 93320441 93320644 -24541983 - MLT1K LTR MaLR 0 588 391 2296 105 0 3 chr9 93320644 93320949 -24541678 - AluSx SINE Alu -8 304 1 585 257 28 52 chr9 93320949 93320994 -24541633 - MLT1K LTR MaLR -197 391 346 3554 184 56 50 chr9 93321195 93321946 -24540681 + L1MB7 LINE L1 4292 5037 -1147 1648 103 0 18 chr9 93321946 93322170 -24540457 + AluSc SINE Alu 1 220 -89 3554 184 56 50 chr9 93322170 93323212 -24539415 + L1MB7 LINE L1 5037 6101 -83 1968 135 3 38 chr9 93323213 93323532 -24539095 + AluJo SINE Alu 1 308 -4 587 276 100 24 chr9 93323736 93323986 -24538641 + MER41E LTR ERV1 239 507 -5 466 80 27 0 chr9 93323991 93324066 -24538561 + L1MB7 LINE L1 6095 6171 -13 2276 69 18 0 chr9 93324067 93324373 -24538254 - AluSp SINE Alu 0 312 2 340 310 0 0 chr9 93324404 93324504 -24538123 + MIR SINE MIR 157 256 -6 260 324 30 3 chr9 93325220 93325327 -24537300 - MIR SINE MIR -87 121 11 718 231 35 94 chr9 93325341 93325497 -24537130 - MIR SINE MIR -10 252 115 1636 90 27 0 chr9 93325497 93325719 -24536908 + MER30 DNA MER1_type 3 230 0 718 231 35 94 chr9 93325719 93325818 -24536809 - MIR SINE MIR -147 115 12 1585 132 128 0 chr9 93325982 93326240 -24536387 - AluSp SINE Alu -12 291 1 451 221 127 9 chr9 93326483 93326640 -24535987 + MIR SINE MIR 14 187 -65 201 276 40 26 chr9 93326878 93326954 -24535673 - MIR SINE MIR -85 123 47 246 300 43 0 chr9 93327200 93327270 -24535357 + MIR SINE MIR 28 100 -108 241 118 0 0 chr9 93327273 93327307 -24535320 - MER112 DNA MER1_type -33 227 194 185 273 180 17 chr9 93327641 93327771 -24534856 - MIR SINE MIR -58 150 33 365 196 0 76 chr9 93328221 93328313 -24534314 + MIR SINE MIR 62 146 -62 272 30 0 0 chr9 93328812 93328845 -24533782 - U2 snRNA snRNA -155 33 1 464 254 4 59 chr9 93328954 93329094 -24533533 - L1ME3A LINE L1 -214 5956 5833 2181 102 17 3 chr9 93329094 93329387 -24533240 - AluSx SINE Alu -15 297 1 464 254 4 59 chr9 93329387 93329482 -24533145 - L1ME3A LINE L1 -337 5833 5734 283 109 22 0 chr9 93329529 93329575 -24533052 + L2 LINE L2 3263 3309 -4 494 271 7 14 chr9 93329896 93330040 -24532587 + MIR3 SINE MIR 4 146 -62 229 171 0 6 chr9 93330372 93330415 -24532212 + L2 LINE L2 3146 3229 -84 1956 123 0 4 chr9 93330496 93330765 -24531862 - AluSx SINE Alu -44 268 1 476 221 32 65 chr9 93330880 93331097 -24531530 - Charlie4a DNA MER1_type -3 505 296 921 191 0 0 chr9 93331103 93331265 -24531362 + AluJb SINE Alu 139 300 -12 1205 188 36 43 chr9 93331271 93331575 -24531052 - Charlie4a DNA MER1_type -206 302 1 388 299 89 56 chr9 93332046 93333111 -24529516 + L1M4 LINE L1 3100 4199 -1947 22 0 0 0 chr9 93333450 93333472 -24529155 + AT_rich Low_complexity Low_complexity 1 22 0 1850 144 14 14 chr9 93333551 93333836 -24528791 + AluJb SINE Alu 1 285 -27 334 315 9 0 chr9 93334472 93334583 -24528044 + (CA)n Simple_repeat Simple_repeat 1 112 0 188 211 0 18 chr9 93335475 93335532 -24527095 + CT-rich Low_complexity Low_complexity 2 57 0 303 300 154 9 chr9 93335696 93335806 -24526821 + L2 LINE L2 3185 3310 -3 2012 118 0 4 chr9 93335936 93336276 -24526351 - AluSx SINE Alu 0 343 5 1379 152 0 0 chr9 93336591 93336802 -24525825 + AluJb SINE Alu 84 294 -18 22 35 0 0 chr9 93337207 93337236 -24525391 + AT_rich Low_complexity Low_complexity 1 29 0 349 297 18 95 chr9 93337621 93337843 -24524784 + L1MDa LINE L1 2412 2616 -3924 3378 243 77 26 chr9 93338251 93339850 -24522777 + L1MDa LINE L1 1121 2801 -3920 1128 200 110 3 chr9 93339844 93340134 -24522493 + MLT1-int LTR MaLR 281 601 -770 * 2617 233 60 2 chr9 93340130 93340979 -24521648 + L1MDa LINE L1 2760 3657 -2883 1098 227 84 21 chr9 93340985 93341403 -24521224 + L1MDa LINE L1 4281 4724 -1816 868 219 72 25 chr9 93341404 93341641 -24520986 + L1ME1 LINE L1 18 265 -6275 2043 212 79 12 chr9 93341647 93342128 -24520499 + MLT2B1 LTR ERVL 1 513 -7 3643 229 66 69 chr9 93342135 93343505 -24519122 + MLT1A1-int LTR MaLR 5 1370 -1 1410 205 27 43 chr9 93343506 93343830 -24518797 + MLT1A1 LTR MaLR 1 320 -45 2572 107 8 11 chr9 93343830 93344195 -24518432 - THE1B LTR MaLR 0 364 1 1410 205 27 43 chr9 93344195 93344241 -24518386 + MLT1A1 LTR MaLR 320 365 0 7362 201 85 16 chr9 93344246 93346174 -24516453 + L1ME1 LINE L1 272 2332 -4208 214 204 0 20 chr9 93346175 93346224 -24516403 + (CATATA)n Simple_repeat Simple_repeat 3 50 0 387 154 53 0 chr9 93346227 93346396 -24516231 + (TA)n Simple_repeat Simple_repeat 1 178 0 42 20 0 0 chr9 93346398 93346447 -24516180 + AT_rich Low_complexity Low_complexity 1 49 0 216 158 0 0 chr9 93346474 93346512 -24516115 + (CATATA)n Simple_repeat Simple_repeat 5 42 0 227 173 39 0 chr9 93346540 93346592 -24516035 + (TA)n Simple_repeat Simple_repeat 1 54 0 2583 200 47 34 chr9 93346607 93347703 -24514924 + L1ME1 LINE L1 2337 3435 -3105 563 271 23 0 chr9 93347707 93347840 -24514787 + FLAM_A SINE Alu 6 141 -1 3995 233 49 50 chr9 93347840 93347900 -24514727 + L1ME1 LINE L1 3430 3489 -3051 1961 130 14 0 chr9 93347900 93348176 -24514451 + AluSg SINE Alu 1 280 -30 3995 233 49 50 chr9 93348176 93349538 -24513089 + L1ME1 LINE L1 3489 4852 -1688 183 80 0 0 chr9 93349538 93349563 -24513064 + (CATATA)n Simple_repeat Simple_repeat 5 29 0 3995 233 49 50 chr9 93349563 93349845 -24512782 + L1ME1 LINE L1 4852 5133 -1407 1828 204 132 14 chr9 93349857 93350202 -24512425 + L1ME1 LINE L1 5625 5928 -632 1636 181 64 54 chr9 93350202 93350240 -24512387 + MSTD LTR MaLR 1 37 -359 2176 129 0 3 chr9 93350240 93350542 -24512085 - AluSx SINE Alu -11 301 1 1636 181 64 54 chr9 93350542 93350895 -24511732 + MSTD LTR MaLR 37 396 0 1828 204 132 14 chr9 93350895 93351370 -24511257 + L1ME1 LINE L1 5928 6539 -21 303 301 94 52 chr9 93351754 93351967 -24510660 + L1MB7 LINE L1 2945 3166 -2980 1789 165 7 0 chr9 93352000 93352285 -24510342 - AluJb SINE Alu -1 311 25 1530 269 88 28 chr9 93352381 93352950 -24509677 + L1ME4a LINE L1 2 604 -5938 4093 174 47 30 chr9 93352976 93353148 -24509479 + L1MB7 LINE L1 4616 4783 -1401 197 62 0 31 chr9 93353148 93353180 -24509447 + (TA)n Simple_repeat Simple_repeat 1 31 0 4093 174 47 30 chr9 93353180 93354539 -24508088 + L1MB7 LINE L1 4783 6168 -16 22 0 0 0 chr9 93354752 93354774 -24507853 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr9 93354964 93354991 -24507636 + AT_rich Low_complexity Low_complexity 1 27 0 245 293 75 0 chr9 93354996 93355102 -24507525 + L1ME4a LINE L1 4253 4366 -2278 1676 174 23 13 chr9 93355180 93355479 -24507148 - AluJo SINE Alu -10 302 1 3278 73 0 2 chr9 93356009 93356436 -24506191 - L1PA11 LINE L1 -3 6171 5746 2011 71 0 0 chr9 93356436 93356703 -24505924 + L1P4 LINE L1 5444 5710 -464 26 64 0 0 chr9 93356861 93356908 -24505719 + AT_rich Low_complexity Low_complexity 1 47 0 22 0 0 0 chr9 93358561 93358583 -24504044 + AT_rich Low_complexity Low_complexity 1 22 0 2217 152 61 16 chr9 93358745 93359239 -24503388 - Charlie1b DNA MER1_type -6 517 2 2351 116 108 8 chr9 93359435 93359823 -24502804 - MSTA LTR MaLR -1 427 1 205 186 0 0 chr9 93360083 93360126 -24502501 + (TATATG)n Simple_repeat Simple_repeat 3 45 0 378 305 73 54 chr9 93360164 93360778 -24501849 + L1ME4a LINE L1 4953 5578 -1066 296 284 160 37 chr9 93360862 93361301 -24501326 + L1ME4a LINE L1 5800 6302 -535 354 300 112 22 chr9 93361333 93361646 -24500981 + L1ME4a LINE L1 6268 6608 -11 21 0 0 0 chr9 93361646 93361667 -24500960 + AT_rich Low_complexity Low_complexity 1 21 0 441 281 101 6 chr9 93362664 93362842 -24499785 + MIR SINE MIR 20 214 -48 2064 157 120 0 chr9 93362946 93363328 -24499299 - MSTA LTR MaLR 0 428 1 299 269 74 9 chr9 93363387 93363495 -24499132 - MIR SINE MIR -61 147 33 338 270 101 0 chr9 93363995 93364143 -24498484 - MER103 DNA DNA -1 165 3 626 293 109 23 chr9 93364176 93364480 -24498147 + L2 LINE L2 2984 3313 0 416 316 32 7 chr9 93364725 93364880 -24497747 - MIR SINE MIR -12 250 92 3421 210 78 51 chr9 93364889 93365095 -24497532 - L1M4 LINE L1 -1561 5396 5197 660 212 0 23 chr9 93365095 93365227 -24497400 - FLAM_A SINE Alu -4 129 1 3421 210 78 51 chr9 93365227 93366850 -24495777 - L1M4 LINE L1 -1760 5197 3412 478 214 0 0 chr9 93366867 93366956 -24495671 - LTR52-int LTR ERVL -3271 285 197 886 203 17 117 chr9 93366956 93367256 -24495371 - LTR52 LTR ERVL -19 402 133 393 261 51 0 chr9 93367270 93367408 -24495219 - L1M4 LINE L1 -3629 3328 3184 874 213 11 6 chr9 93367408 93367582 -24495045 - AluJo SINE Alu -11 301 127 1277 232 66 101 chr9 93367587 93367671 -24494956 - L1M4 LINE L1 -3787 3170 3085 2259 108 3 22 chr9 93367671 93367987 -24494640 - AluSx SINE Alu -2 310 1 1277 232 66 101 chr9 93367987 93368968 -24493659 - L1M4 LINE L1 -3872 3085 2157 2097 114 7 0 chr9 93368968 93369277 -24493350 - AluSg SINE Alu 0 311 1 1277 232 66 101 chr9 93369277 93369537 -24493090 - L1M4 LINE L1 -4800 2157 1889 469 214 129 62 chr9 93369661 93369871 -24492756 - L1ME LINE L1 -305 5816 5593 1708 234 131 22 chr9 93370835 93371475 -24491152 - L1M4 LINE L1 -4956 1899 1190 317 266 32 32 chr9 93371526 93371650 -24490977 - L1M4 LINE L1 -5655 1200 1077 430 279 53 45 chr9 93371997 93372241 -24490386 - L1M4 LINE L1 -6611 248 3 186 43 0 0 chr9 93372388 93372411 -24490216 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 245 369 39 15 chr9 93372463 93372593 -24490034 - MIR3 SINE MIR -68 140 8 1529 264 50 0 chr9 93373282 93373718 -24488909 + LTR33 LTR ERVL 1 458 -63 374 294 18 0 chr9 93373820 93373929 -24488698 + MIR SINE MIR 35 145 -63 2113 113 7 20 chr9 93373935 93374235 -24488392 + AluSx SINE Alu 1 296 -16 2183 200 77 13 chr9 93374250 93374845 -24487782 - Charlie2 DNA MER1_type 0 2862 2230 520 264 0 50 chr9 93374944 93375103 -24487524 - Charlie2 DNA MER1_type -2503 279 129 1939 122 3 62 chr9 93375142 93375300 -24487327 - AluSx SINE Alu -26 286 153 5768 63 1 1 chr9 93375300 93376026 -24486601 - L1PA8 LINE L1 0 6172 5447 1939 122 3 62 chr9 93376026 93376171 -24486456 - AluSx SINE Alu -159 153 1 412 191 110 59 chr9 93376173 93376309 -24486318 - Charlie2 DNA MER1_type -2639 143 1 417 239 103 39 chr9 93376469 93376624 -24486003 + MIR SINE MIR 80 244 -18 545 305 145 37 chr9 93377601 93377926 -24484701 + MLT1H LTR MaLR 1 360 -189 300 263 13 0 chr9 93377969 93378045 -24484582 + MLT1H LTR MaLR 457 533 -16 510 306 87 0 chr9 93378242 93378415 -24484212 + MIR SINE MIR 2 189 -73 758 146 85 18 chr9 93378422 93378586 -24484041 - L1MA8 LINE L1 -2 6289 6115 3414 132 20 23 chr9 93378587 93379043 -24483584 - L1MA8 LINE L1 -508 5783 5327 2270 107 0 7 chr9 93379043 93379351 -24483276 - AluSc SINE Alu -3 306 1 3414 132 20 23 chr9 93379351 93379832 -24482795 - L1MA8 LINE L1 -964 5327 4842 2089 112 18 0 chr9 93380382 93380658 -24481969 - AluSx SINE Alu -26 286 6 1981 100 0 39 chr9 93381301 93381581 -24481046 + AluSq SINE Alu 34 302 -11 1900 236 79 106 chr9 93381597 93381847 -24480780 - MLT1G LTR MaLR -8 582 327 1622 218 179 23 chr9 93381847 93382360 -24480267 - MLT1E LTR MaLR 0 593 1 1900 236 79 106 chr9 93382360 93382693 -24479934 - MLT1G LTR MaLR -263 327 20 565 250 8 0 chr9 93382760 93382892 -24479735 + MER94 DNA DNA 2 134 0 1234 270 125 11 chr9 93383169 93383617 -24479010 - MLT1K LTR MaLR -57 531 33 939 247 130 78 chr9 93383844 93384106 -24478521 - MLT1H LTR MaLR 0 549 302 1869 169 27 6 chr9 93384106 93384443 -24478184 + MER2 DNA MER2_type 1 344 0 939 247 130 78 chr9 93384443 93384501 -24478126 - MLT1H LTR MaLR -247 302 248 1825 194 0 0 chr9 93384501 93384810 -24477817 - AluJb SINE Alu -3 309 1 939 247 130 78 chr9 93384810 93385010 -24477617 - MLT1H LTR MaLR -301 248 1 2146 158 2 45 chr9 93385164 93385435 -24477192 + L1MB3 LINE L1 5561 5811 -372 2524 55 0 0 chr9 93385435 93385726 -24476901 + AluY SINE Alu 2 292 -19 2146 158 2 45 chr9 93385726 93385858 -24476769 + L1MB3 LINE L1 5811 5947 -236 2215 89 31 3 chr9 93385975 93386267 -24476360 - AluSq SINE Alu -13 300 1 277 301 83 45 chr9 93386563 93386696 -24475931 + MER5B DNA MER1_type 40 177 -1 2551 186 41 65 chr9 93387141 93387818 -24474809 - L1MC4 LINE L1 0 8042 7382 182 234 21 0 chr9 93387830 93387877 -24474750 + MIR SINE MIR 102 149 -113 403 280 19 38 chr9 93388069 93388226 -24474401 - MIR SINE MIR -108 154 1 236 182 152 30 chr9 93388590 93388689 -24473938 - MIR SINE MIR -34 228 118 2479 68 0 0 chr9 93388908 93389203 -24473424 - AluSc SINE Alu -14 295 1 1879 36 54 5 chr9 93390715 93390938 -24471689 - AluY SINE Alu -14 297 64 464 245 65 45 chr9 93390948 93391024 -24471603 - MIR SINE MIR -41 221 148 2202 96 0 3 chr9 93391024 93391375 -24471252 - AluSc SINE Alu 0 350 1 464 245 65 45 chr9 93391375 93391497 -24471130 - MIR SINE MIR -114 148 18 182 324 9 29 chr9 93391590 93391695 -24470932 - L3 LINE CR1 -4 1573 1471 659 269 47 0 chr9 93392653 93392824 -24469803 + MER5A DNA MER1_type 5 183 -6 193 217 0 22 chr9 93392881 93392927 -24469700 + L2 LINE L2 3264 3308 -5 2074 102 20 14 chr9 93393434 93393728 -24468899 - AluSg SINE Alu -14 296 1 212 227 35 43 chr9 93394953 93395094 -24467533 + (CGGG)n Simple_repeat Simple_repeat 2 141 0 274 198 45 9 chr9 93395165 93395276 -24467351 + (CGCGG)n Simple_repeat Simple_repeat 1 115 0 46 62 0 0 chr9 93395276 93395357 -24467270 + GC_rich Low_complexity Low_complexity 1 81 0 288 0 0 0 chr9 93395365 93395397 -24467230 + (CGG)n Simple_repeat Simple_repeat 3 34 0 31 26 0 0 chr9 93395528 93395566 -24467061 + GC_rich Low_complexity Low_complexity 1 38 0 26 74 0 0 chr9 93396067 93396121 -24466506 + AT_rich Low_complexity Low_complexity 1 54 0 243 61 0 0 chr9 93398469 93398502 -24464125 + (T)n Simple_repeat Simple_repeat 1 33 0 23 0 0 0 chr9 93398871 93398894 -24463733 + AT_rich Low_complexity Low_complexity 1 23 0 358 282 19 19 chr9 93399379 93399482 -24463145 + MIR3 SINE MIR 58 160 -48 472 192 20 20 chr9 93399490 93399589 -24463038 + MER117 DNA MER1_type 6 104 -93 797 226 54 32 chr9 93399692 93399913 -24462714 - MER112 DNA MER1_type -34 226 1 1376 169 49 55 chr9 93400420 93400746 -24461881 - MER33 DNA MER1_type 0 324 1 308 313 47 20 chr9 93401333 93401483 -24461144 + MIR SINE MIR 38 191 -71 239 313 111 0 chr9 93402174 93402318 -24460309 - MARNA DNA Mariner -249 337 178 276 230 62 93 chr9 93402823 93402984 -24459643 + MER104 DNA Tc2 9 164 -16 183 42 0 0 chr9 93403071 93403095 -24459532 + (C)n Simple_repeat Simple_repeat 1 24 0 252 349 56 8 chr9 93403339 93403465 -24459162 + MIR3 SINE MIR 14 145 -63 535 198 33 41 chr9 93403604 93403725 -24458902 - MER117 DNA MER1_type 0 197 78 372 22 0 0 chr9 93403863 93403908 -24458719 + (GA)n Simple_repeat Simple_repeat 2 46 0 332 254 44 61 chr9 93403908 93404022 -24458605 - MIR3 SINE MIR -82 126 15 229 343 19 28 chr9 93404296 93404404 -24458223 + MIR SINE MIR 47 153 -109 943 150 128 116 chr9 93405839 93406159 -24456468 + MER33 DNA MER1_type 1 324 0 337 250 0 0 chr9 93406159 93406239 -24456388 - MIR3 SINE MIR -48 160 81 26 0 0 0 chr9 93406917 93406943 -24455684 + AT_rich Low_complexity Low_complexity 1 26 0 529 308 77 0 chr9 93407035 93407230 -24455397 - MIR SINE MIR -11 251 42 234 215 190 0 chr9 93407243 93407322 -24455305 - MIR SINE MIR -81 181 88 232 293 13 0 chr9 93407806 93407881 -24454746 + MIR3 SINE MIR 91 166 -42 901 232 71 65 chr9 93408138 93408755 -24453872 - MLT1G LTR MaLR 0 577 13 230 328 0 32 chr9 93408779 93408904 -24453723 + (TCTA)n Simple_repeat Simple_repeat 3 123 0 451 257 48 21 chr9 93409022 93409179 -24453448 - MIR SINE MIR -62 146 26 555 270 129 73 chr9 93409271 93410052 -24452575 - L1ME4a LINE L1 0 6121 5297 21 0 0 0 chr9 93410189 93410210 -24452417 + AT_rich Low_complexity Low_complexity 1 21 0 2848 137 94 14 chr9 93410255 93410933 -24451694 + L1MB4 LINE L1 5155 5887 -293 1619 178 50 15 chr9 93410961 93411247 -24451380 + L1MB2 LINE L1 5787 6088 -83 1631 154 103 6 chr9 93411247 93411559 -24451068 + MER2 DNA MER2_type 3 344 0 1619 178 50 15 chr9 93411559 93411609 -24451018 + L1MB2 LINE L1 6088 6135 -36 310 333 93 23 chr9 93411790 93412090 -24450537 - L1ME4a LINE L1 -1099 5047 4727 316 255 128 10 chr9 93412229 93412331 -24450296 - MIR SINE MIR -124 138 25 441 269 46 25 chr9 93412717 93412955 -24449672 - L1ME LINE L1 -301 5820 5578 641 310 94 28 chr9 93413611 93414153 -24448474 - L1ME4a LINE L1 -1542 4604 4027 540 293 94 14 chr9 93414361 93414669 -24447958 - L1ME4a LINE L1 -2200 3946 3616 306 210 123 0 chr9 93414681 93414762 -24447865 + MER117 DNA MER1_type 1 91 -106 412 323 49 38 chr9 93416310 93416654 -24445973 - HAL1b LINE L1 -791 557 210 2117 99 7 14 chr9 93416872 93417181 -24445446 - AluSq SINE Alu 0 307 1 1689 135 52 8 chr9 93417520 93417787 -24444840 - AluJo SINE Alu -5 307 29 3093 166 20 19 chr9 93418226 93418448 -24444179 - L1MB2 LINE L1 -1 6170 5950 1985 123 52 12 chr9 93418448 93418772 -24443855 + MER1B DNA MER1_type 1 337 0 3093 166 20 19 chr9 93418772 93419138 -24443489 - L1MB2 LINE L1 -221 5950 5581 2144 128 0 13 chr9 93419138 93419450 -24443177 - AluSx SINE Alu -4 308 1 375 209 22 101 chr9 93419546 93419685 -24442942 - MIR SINE MIR -61 147 20 537 288 79 19 chr9 93421203 93421418 -24441209 + MIR SINE MIR 16 243 -19 393 195 17 44 chr9 93421805 93421932 -24440695 - L1ME LINE L1 -350 5820 5703 259 322 0 0 chr9 93422009 93422096 -24440531 - L1ME LINE L1 -448 5714 5628 473 275 26 42 chr9 93422481 93422674 -24439953 - L1MC4a LINE L1 -1907 5901 5712 1864 206 126 100 chr9 93422696 93423647 -24438980 - L1MEc LINE L1 -4699 1697 719 1826 181 98 69 chr9 93423647 93424138 -24438489 - MLT1D LTR MaLR 0 505 1 1864 206 126 100 chr9 93424138 93424166 -24438461 - L1MEc LINE L1 -5677 719 693 1421 141 83 0 chr9 93424166 93424407 -24438220 - AluSx SINE Alu -18 294 34 260 224 35 0 chr9 93424409 93424467 -24438160 - L1MEc LINE L1 -5698 698 639 684 207 191 21 chr9 93424474 93424662 -24437965 + MER58A DNA MER1_type 1 220 -4 1459 277 73 10 chr9 93424680 93425174 -24437453 - L1MEc LINE L1 -5829 567 43 202 365 0 0 chr9 93425713 93425787 -24436840 - MIR SINE MIR -77 131 58 1716 274 59 18 chr9 93425838 93426397 -24436230 - MLT1K LTR MaLR -5 583 2 1416 146 65 11 chr9 93427451 93427711 -24434916 + ORSL DNA AcHobo 2 275 0 342 246 14 21 chr9 93428135 93428277 -24434350 + MIR3 SINE MIR 24 164 -44 2322 105 7 0 chr9 93428867 93429171 -24433456 - AluSx SINE Alu -6 306 1 2311 110 0 10 chr9 93429912 93430222 -24432405 - AluSx SINE Alu -5 307 1 318 231 96 23 chr9 93430275 93430414 -24432213 - HAL1b LINE L1 -1 6120 1210 2241 120 0 0 chr9 93430416 93430717 -24431910 - AluSq SINE Alu -12 301 1 720 121 68 0 chr9 93431069 93431201 -24431426 - MER5A DNA MER1_type -38 151 11 207 272 136 0 chr9 93431829 93431954 -24430673 + MIR3 SINE MIR 36 177 -31 392 255 85 14 chr9 93432301 93432442 -24430185 - MIR SINE MIR -58 150 14 422 242 10 0 chr9 93433044 93433143 -24429484 - MER103 DNA DNA -49 117 18 264 196 0 0 chr9 93434200 93434246 -24428381 - L2 LINE L2 -21 3292 3247 189 195 0 0 chr9 93434831 93434872 -24427755 + (TAGA)n Simple_repeat Simple_repeat 2 42 0 458 241 27 0 chr9 93434935 93435047 -24427580 + L2 LINE L2 3199 3313 0 321 109 0 0 chr9 93435149 93435204 -24427423 + (TG)n Simple_repeat Simple_repeat 2 56 0 425 271 76 46 chr9 93436159 93436324 -24426303 + L2 LINE L2 2877 3054 -259 1719 164 0 28 chr9 93436324 93436641 -24425986 - AluJb SINE Alu -3 309 2 425 271 76 46 chr9 93436641 93436737 -24425890 + L2 LINE L2 3054 3146 -167 4273 217 35 30 chr9 93436853 93437919 -24424708 - L1MC4a LINE L1 -1 7807 6737 311 255 28 47 chr9 93437922 93438028 -24424599 + L2 LINE L2 3210 3313 0 252 204 0 19 chr9 93438864 93438918 -24423709 - MIR SINE MIR -62 146 94 2122 128 7 0 chr9 93439494 93439790 -24422837 - AluSx SINE Alu -14 298 1 283 299 0 0 chr9 93439814 93439911 -24422716 + MIR SINE MIR 160 256 -6 281 255 102 10 chr9 93440258 93440370 -24422257 + MIR SINE MIR 43 161 -62 409 209 7 105 chr9 93440982 93441135 -24421492 - L1ME4a LINE L1 0 6121 5984 271 202 143 24 chr9 93441193 93441277 -24421350 - L2 LINE L2 -5 3308 3215 192 111 0 0 chr9 93441550 93441586 -24421041 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 9914 192 113 83 chr9 93441586 93442863 -24419764 - L1MCa LINE L1 -1206 5220 3983 1510 156 0 8 chr9 93442863 93443101 -24419526 - MER46A DNA MER2_type 0 236 1 9914 192 113 83 chr9 93443101 93445825 -24416802 - L1MCa LINE L1 -2443 3983 1037 1929 162 0 0 chr9 93445825 93446130 -24416497 + AluJb SINE Alu 7 311 0 9914 192 113 83 chr9 93446130 93447199 -24415428 - L1MCa LINE L1 -5389 1037 1 4325 214 26 59 chr9 93447189 93448563 -24414064 - L1MCb LINE L1 -4852 1193 1 * 209 171 0 0 chr9 93448768 93448809 -24413818 + MIR SINE MIR 109 149 -113 192 288 30 0 chr9 93449648 93449714 -24412913 + L2 LINE L2 3200 3267 -5 199 326 42 11 chr9 93450411 93450506 -24412121 - L2 LINE L2 -256 3016 2919 1638 129 54 9 chr9 93450675 93450993 -24411634 + MER33 DNA MER1_type 1 324 0 1986 260 240 37 chr9 93451055 93453445 -24409182 - L2 LINE L2 0 3313 442 285 327 145 6 chr9 93453446 93453605 -24409022 + MIR SINE MIR 60 240 -22 1004 168 0 0 chr9 93455043 93455204 -24407423 - FRAM SINE Alu -12 164 4 387 276 92 25 chr9 93455252 93455448 -24407179 + MIR SINE MIR 2 210 -52 256 255 102 0 chr9 93455694 93455792 -24406835 + MIR SINE MIR 128 235 -27 2227 187 96 46 chr9 93456212 93456822 -24405805 - L1MD3 LINE L1 -1 8039 7413 526 303 83 44 chr9 93457114 93457254 -24405373 - L1M4 LINE L1 -1534 4612 4479 1722 158 16 54 chr9 93457254 93457570 -24405057 - AluJo SINE Alu -8 304 1 526 303 83 44 chr9 93457570 93457648 -24404979 - L1M4 LINE L1 -1667 4479 4405 2293 121 0 3 chr9 93457648 93457955 -24404672 - AluSx SINE Alu -3 309 4 526 303 83 44 chr9 93457955 93458352 -24404275 - L1M4 LINE L1 -1741 4405 3972 184 29 0 57 chr9 93458370 93458405 -24404222 + (TTG)n Simple_repeat Simple_repeat 1 33 0 244 276 189 46 chr9 93458448 93459641 -24402986 - L1M4 LINE L1 -2358 3788 2425 484 212 44 0 chr9 93459764 93459877 -24402750 - L1MD3 LINE L1 0 7995 7878 224 289 0 0 chr9 93460099 93460151 -24402476 + CT-rich Low_complexity Low_complexity 2 53 0 543 298 38 23 chr9 93460599 93460861 -24401766 - HAL1 LINE L1 -857 1650 1385 186 204 45 0 chr9 93461268 93461312 -24401315 + MIR3 SINE MIR 109 154 -54 707 218 0 58 chr9 93462578 93462766 -24399861 - Charlie8 DNA MER1_type -2159 258 82 1965 147 7 7 chr9 93463367 93463666 -24398961 - AluSx SINE Alu -13 299 1 1541 184 12 9 chr9 93463693 93464013 -24398614 - MER33 DNA MER1_type 0 324 4 515 344 41 47 chr9 93464155 93464647 -24397980 + L2 LINE L2 2819 3307 -6 374 308 38 38 chr9 93465299 93465432 -24397195 - MIR3 SINE MIR -3 205 73 281 235 184 37 chr9 93465895 93466031 -24396596 - L3 LINE CR1 -18 1559 1404 455 302 186 0 chr9 93466317 93466489 -24396138 + MIR SINE MIR 28 231 -31 199 226 75 19 chr9 93466566 93466619 -24396008 + L2 LINE L2 3182 3237 -35 212 185 49 123 chr9 93467736 93467817 -24394810 - L2 LINE L2 -3 3310 3236 190 278 83 53 chr9 93468031 93468164 -24394463 - MIR3 SINE MIR -42 166 30 318 259 185 7 chr9 93468564 93468699 -24393928 - L3 LINE CR1 -87 1490 1332 236 320 72 13 chr9 93470075 93470228 -24392399 - L2 LINE L2 -549 2765 2604 445 309 51 11 chr9 93470265 93470443 -24392184 + MIR SINE MIR 76 260 -2 226 238 0 0 chr9 93470485 93470548 -24392079 + L1MC4 LINE L1 6640 6702 -1340 300 300 25 0 chr9 93470591 93470671 -24391956 + L1MC4 LINE L1 6614 6695 -1347 235 182 0 18 chr9 93470673 93470728 -24391899 + LTR66 LTR ERVL 394 447 -163 190 291 39 58 chr9 93471517 93471620 -24391007 - L3 LINE CR1 -149 1428 1328 560 280 19 11 chr9 93471644 93471811 -24390816 + MIR SINE MIR 2 175 -33 235 299 102 22 chr9 93471972 93472109 -24390518 + MIR SINE MIR 107 254 -8 212 186 279 12 chr9 93472661 93472747 -24389880 + MIR SINE MIR 98 206 -56 959 307 63 19 chr9 93473767 93474242 -24388385 + LTR33A LTR ERVL 7 502 -21 205 115 19 173 chr9 93475011 93475043 -24387584 + MIR3 SINE MIR 117 140 -68 2231 88 3 0 chr9 93475043 93475328 -24387299 + AluSq SINE Alu 28 313 0 205 115 19 173 chr9 93475328 93475347 -24387280 + MIR3 SINE MIR 140 160 -48 554 237 0 0 chr9 93475385 93475499 -24387128 - MER117 DNA MER1_type -47 150 37 941 293 16 4 chr9 93475956 93476205 -24386422 - MIR SINE MIR -4 258 7 388 273 133 14 chr9 93476362 93476505 -24386122 - MIR SINE MIR -71 191 32 331 248 155 0 chr9 93476504 93476633 -24385994 - MIR3 SINE MIR -18 190 42 * 446 323 95 4 chr9 93477283 93477515 -24385112 + MIR SINE MIR 2 254 -8 509 228 74 0 chr9 93477598 93477728 -24384899 - MIR SINE MIR -38 224 85 348 179 36 24 chr9 93478011 93478095 -24384532 + L1MD3 LINE L1 7907 7991 -4 2456 60 9 25 chr9 93478095 93478410 -24384217 + AluSp SINE Alu 1 310 -3 2461 90 0 3 chr9 93478687 93478997 -24383630 - AluSq SINE Alu -4 309 1 221 235 10 112 chr9 93480392 93480490 -24382137 + L2 LINE L2 3226 3313 0 182 323 50 81 chr9 93480491 93480590 -24382037 + L2 LINE L2 3174 3269 -3 298 290 87 7 chr9 93480697 93480835 -24381792 + Tigger8 DNA MER2_type 432 580 -86 323 334 17 54 chr9 93481047 93481234 -24381393 + MIR SINE MIR 30 211 -51 1636 253 147 39 chr9 93481270 93482087 -24380540 + L2 LINE L2 2416 3313 0 309 261 0 0 chr9 93482661 93482726 -24379901 + L2 LINE L2 3248 3312 -1 269 290 14 0 chr9 93482845 93482914 -24379713 - L2 LINE L2 -8 3264 3195 198 0 0 0 chr9 93483839 93483861 -24378766 + (T)n Simple_repeat Simple_repeat 1 22 0 194 345 60 0 chr9 93484750 93484834 -24377793 - MIR SINE MIR -59 149 61 193 300 100 56 chr9 93485072 93485162 -24377465 + MIR SINE MIR 37 130 -78 601 264 52 82 chr9 93485228 93485459 -24377168 - MIR SINE MIR -21 241 18 307 179 39 13 chr9 93485517 93485595 -24377032 + MER116 DNA Mariner 1 80 0 1026 246 34 44 chr9 93485898 93486309 -24376318 + Tigger8 DNA MER2_type 174 580 -86 182 300 83 8 chr9 93486682 93486802 -24375825 + MIR SINE MIR 73 201 -61 786 195 110 72 chr9 93487131 93487423 -24375204 + MER46C DNA MER2_type 1 303 -35 289 255 180 65 chr9 93488607 93488807 -24373820 - MLT1K LTR MaLR -345 243 21 439 259 24 42 chr9 93489147 93489313 -24373314 + MER103 DNA DNA 3 165 -1 308 340 43 25 chr9 93489361 93489523 -24373104 - L2 LINE L2 -543 2771 2607 389 274 11 0 chr9 93489537 93489632 -24372995 - MER58B DNA MER1_type -35 306 211 601 312 106 28 chr9 93489678 93490037 -24372590 + L2 LINE L2 2920 3306 -7 390 317 98 6 chr9 93490296 93490460 -24372167 - MIR3 SINE MIR -15 193 15 207 254 182 27 chr9 93490581 93490691 -24371936 - L2 LINE L2 0 3272 3146 276 268 80 22 chr9 93490790 93490928 -24371699 + MER117 DNA MER1_type 52 197 0 712 256 47 105 chr9 93491065 93491140 -24371487 - MIR SINE MIR 0 262 184 1905 164 0 3 chr9 93491140 93491433 -24371194 - AluJb SINE Alu -16 296 5 712 256 47 105 chr9 93491433 93491634 -24370993 - MIR SINE MIR -78 184 2 2199 110 0 32 chr9 93491873 93492181 -24370446 + AluSx SINE Alu 1 298 -14 378 163 58 23 chr9 93492892 93492978 -24369649 - MIR3 SINE MIR -21 187 99 1157 231 232 6 chr9 93493065 93493590 -24369037 - L2 LINE L2 0 3313 2682 908 274 14 11 chr9 93493899 93494140 -24368487 + MIR SINE MIR 25 262 0 252 275 235 20 chr9 93494258 93494407 -24368220 - MIR SINE MIR -13 249 69 1282 176 34 21 chr9 93494601 93494834 -24367793 + MER46A DNA MER2_type 1 236 0 192 345 35 0 chr9 93497608 93497695 -24364932 - L2 LINE L2 -24 3289 3200 377 336 24 8 chr9 93497779 93497904 -24364723 + MIR SINE MIR 13 139 -123 335 337 111 6 chr9 93498775 93498956 -24363671 - L2 LINE L2 -1 3312 3113 * 954 227 60 211 chr9 93498942 93499549 -24363078 - L2 LINE L2 -557 2757 2246 741 144 17 0 chr9 93499549 93499667 -24362960 + FLAM_A SINE Alu 23 142 0 954 227 60 211 chr9 93499667 93500019 -24362608 - L2 LINE L2 -1068 2246 1843 225 322 136 8 chr9 93500477 93500595 -24362032 - MIR3 SINE MIR -28 180 48 183 326 82 31 chr9 93500830 93500928 -24361699 + MIR SINE MIR 29 131 -77 * 389 238 12 0 chr9 93500915 93500995 -24361632 - L2 LINE L2 -23 3249 3169 1121 227 148 35 chr9 93501281 93501735 -24360892 - MLT1D LTR MaLR 0 505 1 23 54 0 0 chr9 93502303 93502340 -24360287 + AT_rich Low_complexity Low_complexity 1 37 0 248 326 45 11 chr9 93502811 93502900 -24359727 + MIR3 SINE MIR 9 100 -108 233 278 98 68 chr9 93503063 93503196 -24359431 - L2 LINE L2 -6 3307 3171 196 226 54 65 chr9 93503337 93503430 -24359197 - L2 LINE L2 -166 3106 3015 297 306 36 18 chr9 93503504 93503615 -24359012 - MIR SINE MIR -62 146 34 300 254 0 14 chr9 93504011 93504082 -24358545 - MIR SINE MIR -188 74 5 461 349 58 11 chr9 93504171 93504360 -24358267 - MIR SINE MIR -42 220 23 323 338 91 18 chr9 93504335 93504554 -24358073 - L3 LINE CR1 -47 1530 1296 * 652 293 58 5 chr9 93504817 93505025 -24357602 + MIR SINE MIR 39 257 -5 459 249 98 55 chr9 93505233 93505441 -24357186 - MIR SINE MIR -35 227 5 1177 215 68 12 chr9 93505507 93505833 -24356794 - MLT1A2 LTR MaLR -30 344 1 436 330 23 17 chr9 93505925 93506101 -24356526 - MIR3 SINE MIR -16 192 16 250 296 78 9 chr9 93506360 93506475 -24356152 + MIR SINE MIR 30 152 -56 381 240 67 84 chr9 93506727 93506804 -24355823 + MER5A DNA MER1_type 9 86 -103 686 168 8 38 chr9 93506804 93506935 -24355692 + FLAM_A SINE Alu 5 131 -2 381 240 67 84 chr9 93506935 93507036 -24355591 + MER5A DNA MER1_type 86 184 -5 269 213 33 16 chr9 93507124 93507185 -24355442 + MIR3 SINE MIR 93 154 -54 736 258 68 65 chr9 93508236 93508573 -24354054 - MER102b DNA MER1_type -3 338 1 424 299 183 15 chr9 93508824 93509291 -24353336 + L2 LINE L2 2507 3057 -215 967 274 56 41 chr9 93509526 93509916 -24352711 - MLT1I LTR MaLR -7 402 7 188 274 0 0 chr9 93510320 93510371 -24352256 + MIR SINE MIR 95 145 -117 289 292 264 7 chr9 93510468 93510612 -24352015 + MIR SINE MIR 48 228 -34 260 279 205 6 chr9 93511188 93511349 -24351278 + MER117 DNA MER1_type 5 197 0 303 296 12 0 chr9 93511349 93511430 -24351197 - MIR SINE MIR -58 150 69 461 277 61 20 chr9 93512371 93512519 -24350108 - MER117 DNA MER1_type -42 155 2 302 265 97 66 chr9 93512956 93513152 -24349475 + L3 LINE CR1 1328 1529 -48 4308 171 36 39 chr9 93513872 93514875 -24347752 - Charlie2 DNA MER1_type -4 2858 1859 742 287 71 32 chr9 93514878 93515188 -24347439 - Charlie2 DNA MER1_type -2536 326 5 1971 147 40 3 chr9 93516143 93516485 -24346142 - AluJo SINE Alu 0 353 1 386 226 36 0 chr9 93516578 93516662 -24345965 + MIR SINE MIR 108 194 -68 185 304 13 51 chr9 93516695 93516774 -24345853 + MIR SINE MIR 71 146 -62 270 205 64 13 chr9 93517747 93517825 -24344802 + MER103 DNA DNA 2 83 -83 280 329 126 19 chr9 93517969 93518176 -24344451 - MIR SINE MIR 0 262 34 209 250 120 127 chr9 93518678 93518970 -24343657 + L2 LINE L2 2974 3263 -9 219 291 0 0 chr9 93519378 93519433 -24343194 - MIR SINE MIR -67 141 87 1427 108 80 0 chr9 93519467 93519680 -24342947 - MER30 DNA MER1_type 0 230 1 181 229 160 23 chr9 93519853 93519982 -24342645 - MIR SINE MIR -51 211 34 203 308 94 0 chr9 93519996 93520113 -24342514 - MER5A DNA MER1_type -23 166 39 499 281 49 18 chr9 93520509 93520673 -24341954 - MIR SINE MIR -88 174 6 577 181 13 58 chr9 93520825 93520980 -24341647 - MIR3 SINE MIR -58 150 3 1372 233 144 11 chr9 93522443 93522893 -24339734 + L1ME3A LINE L1 5627 6136 -34 800 209 144 30 chr9 93522897 93523098 -24339529 - MER58A DNA MER1_type 0 224 1 207 239 57 45 chr9 93523821 93523909 -24338718 - MIR3 SINE MIR -12 196 108 494 288 50 19 chr9 93524151 93524311 -24338316 - MIR SINE MIR -71 191 27 1382 273 67 53 chr9 93525655 93526205 -24336422 - MLT1E LTR MaLR -2 591 34 274 198 69 79 chr9 93526207 93526308 -24336319 + MIR SINE MIR 48 147 -61 339 164 15 0 chr9 93526728 93526795 -24335832 - MER116 DNA Mariner 0 80 13 189 206 44 73 chr9 93526945 93527013 -24335614 - MIR3 SINE MIR -1 207 142 658 298 55 13 chr9 93527818 93528056 -24334571 + MIR SINE MIR 2 249 -13 201 349 41 58 chr9 93528174 93528346 -24334281 - L2 LINE L2 -30 3242 3074 268 310 123 26 chr9 93528443 93528598 -24334029 - L2 LINE L2 -498 2816 2647 236 215 15 62 chr9 93529014 93529079 -24333548 + MIR SINE MIR 186 247 -15 2249 106 30 3 chr9 93529116 93529417 -24333210 + AluSx SINE Alu 1 309 -3 2344 87 3 0 chr9 93529513 93529800 -24332827 + AluSc SINE Alu 1 288 -21 226 313 0 30 chr9 93529952 93530019 -24332608 + MIR SINE MIR 18 82 -180 575 326 30 26 chr9 93530162 93530395 -24332232 + MIR SINE MIR 17 250 -12 1494 219 45 34 chr9 93531278 93531635 -24330992 - MLT1A2 LTR MaLR -13 361 1 355 310 102 30 chr9 93531935 93532339 -24330288 + HAL1b LINE L1 208 1711 -796 2623 64 0 3 chr9 93532508 93532819 -24329808 - AluY SINE Alu -1 310 1 802 205 84 0 chr9 93532890 93533056 -24329571 + MER5A DNA MER1_type 10 189 0 351 284 42 47 chr9 93533461 93533651 -24328976 + L2 LINE L2 3082 3270 -43 1044 201 0 0 chr9 93533785 93533964 -24328663 - MER5A DNA MER1_type -10 179 1 22 0 0 0 chr9 93534149 93534171 -24328456 + AT_rich Low_complexity Low_complexity 1 22 0 284 290 84 70 chr9 93534419 93534975 -24327652 + L1ME4a LINE L1 5333 5896 -225 183 172 0 0 chr9 93535463 93535492 -24327135 - L2 LINE L2 -34 3238 3210 * 1034 195 41 0 chr9 93535466 93535661 -24326966 - MIR SINE MIR -31 231 29 286 300 113 31 chr9 93536349 93536509 -24326118 + MIR3 SINE MIR 21 193 -15 276 246 40 32 chr9 93537020 93537146 -24325481 + MIR SINE MIR 14 140 -122 288 281 42 10 chr9 93537607 93537703 -24324924 - MIR SINE MIR -161 101 3 240 220 0 0 chr9 93537925 93537975 -24324652 + L3b LINE CR1 1331 1380 -203 4306 235 44 13 chr9 93538158 93540173 -24322454 - L1ME2 LINE L1 -230 6003 3920 278 164 45 0 chr9 93540338 93540405 -24322222 - L1MA9 LINE L1 -44 6268 6199 2301 198 29 54 chr9 93540661 93541308 -24321319 - L1ME1 LINE L1 -5 6161 5531 3141 268 72 29 chr9 93541310 93544157 -24318470 - L1ME2 LINE L1 -2449 3766 150 243 315 24 71 chr9 93544688 93544815 -24317812 + MIR SINE MIR 16 136 -72 485 313 127 47 chr9 93544955 93545403 -24317224 - L2 LINE L2 0 3313 2830 199 227 13 67 chr9 93546624 93546699 -24315928 + MIR SINE MIR 67 137 -71 448 247 32 51 chr9 93548155 93548313 -24314314 + MIR3 SINE MIR 23 177 -31 552 261 128 5 chr9 93548381 93548576 -24314051 + Charlie8 DNA MER1_type 62 280 -2137 245 271 29 0 chr9 93548633 93548703 -24313924 + Charlie8 DNA MER1_type 2344 2415 -2 482 242 46 46 chr9 93550161 93550314 -24312313 + MIR SINE MIR 98 250 -12 250 293 0 0 chr9 93550747 93550822 -24311805 + MER103 DNA DNA 16 90 -76 1980 92 92 0 chr9 93552218 93552480 -24310147 + AluSx SINE Alu 1 286 -26 288 0 0 0 chr9 93552480 93552512 -24310115 + (GA)n Simple_repeat Simple_repeat 2 33 0 294 258 158 8 chr9 93553074 93553194 -24309433 + MIR SINE MIR 56 193 -69 386 232 62 18 chr9 93553348 93553460 -24309167 - MIR3 SINE MIR -88 120 4 195 42 0 0 chr9 93553521 93553545 -24309082 + (CTG)n Simple_repeat Simple_repeat 1 24 0 778 256 35 17 chr9 93553547 93553777 -24308850 - MIR SINE MIR -6 256 23 233 278 0 10 chr9 93554640 93554737 -24307890 + CT-rich Low_complexity Low_complexity 3 98 0 192 125 0 0 chr9 93554948 93554980 -24307647 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 298 159 62 142 chr9 93555051 93555164 -24307463 + L2 LINE L2 3202 3305 -8 269 221 26 39 chr9 93555705 93555782 -24306845 - L2 LINE L2 -212 3060 2985 846 243 16 16 chr9 93555936 93556125 -24306502 - MER5A DNA MER1_type 0 189 1 471 299 61 0 chr9 93556230 93556394 -24306233 - MLT1J2 LTR MaLR -33 417 244 262 363 38 0 chr9 93556751 93556831 -24305796 - L3 LINE CR1 -509 1068 986 213 306 0 0 chr9 93556840 93556889 -24305738 - L2 LINE L2 0 3313 3265 520 267 80 28 chr9 93557787 93557963 -24304664 - MIR SINE MIR -4 258 74 874 286 12 20 chr9 93557964 93558212 -24304415 - MIR SINE MIR 0 262 17 225 315 49 56 chr9 93558243 93558386 -24304241 - MIR3 SINE MIR -13 195 54 2221 128 0 13 chr9 93558427 93558740 -24303887 - AluSx SINE Alu -2 310 2 284 302 93 14 chr9 93558766 93558905 -24303722 + MIR SINE MIR 98 247 -15 266 309 99 0 chr9 93559296 93559377 -24303250 - MIR SINE MIR -77 131 43 8038 44 5 10 chr9 93559429 93561195 -24301432 - L1PA5 LINE L1 0 6154 4386 300 300 0 10 chr9 93561252 93561352 -24301275 - L1ME4a LINE L1 -57 6064 5966 3160 210 23 48 chr9 93561362 93561481 -24301146 - L1ME1 LINE L1 -6 6160 6040 791 139 0 58 chr9 93561481 93561618 -24301009 + FLAM_C SINE Alu 1 129 -4 3160 210 23 48 chr9 93561618 93561640 -24300987 - L1ME1 LINE L1 -126 6040 6019 1895 159 3 3 chr9 93561640 93561935 -24300692 + AluJo SINE Alu 4 298 -14 3160 210 23 48 chr9 93561935 93562607 -24300020 - L1ME1 LINE L1 -147 6019 5366 298 67 0 22 chr9 93562608 93562653 -24299974 + L1M LINE L1 5322 5365 -809 * 4898 163 7 24 chr9 93562649 93564119 -24298508 - L1P5 LINE L1 -506 5645 4204 4479 175 48 51 chr9 93564119 93565335 -24297292 - L1ME1 LINE L1 -814 5332 4121 1893 129 66 3 chr9 93565335 93565638 -24296989 + MER7A DNA MER2_type 1 320 -26 1729 171 17 22 chr9 93565655 93566017 -24296610 - L1ME1 LINE L1 -2028 4118 3759 332 310 38 4 chr9 93566322 93566462 -24296165 + MIR SINE MIR 22 160 -56 322 288 133 44 chr9 93566688 93566914 -24295713 - MIR SINE MIR -12 250 5 297 311 0 34 chr9 93567257 93567376 -24295251 - MIR SINE MIR -74 134 20 221 302 0 0 chr9 93567422 93567475 -24295152 + L3 LINE CR1 1494 1546 -31 342 294 0 0 chr9 93567494 93567586 -24295041 - MER117 DNA MER1_type -8 189 98 270 0 0 0 chr9 93569580 93569610 -24293017 + (CA)n Simple_repeat Simple_repeat 2 31 0 234 176 0 0 chr9 93574844 93574895 -24287732 + A-rich Low_complexity Low_complexity 1 51 0 279 241 241 0 chr9 93577328 93577461 -24285166 - Charlie8 DNA MER1_type -2195 222 58 2083 131 0 16 chr9 93577464 93577770 -24284857 + AluJb SINE Alu 1 301 -11 187 232 188 0 chr9 93579729 93579798 -24282829 - MIR SINE MIR -97 165 84 280 234 64 32 chr9 93580305 93580399 -24282228 - MIR3 SINE MIR -24 184 88 395 282 215 29 chr9 93580746 93580955 -24281672 - MIR SINE MIR -9 253 6 225 303 169 40 chr9 93581050 93581400 -24281227 + L2 LINE L2 2874 3268 -4 475 306 58 32 chr9 93583147 93583490 -24279137 + HAL1b LINE L1 390 741 -607 22 0 0 0 chr9 93583529 93583551 -24279076 + AT_rich Low_complexity Low_complexity 1 22 0 2493 149 57 5 chr9 93584281 93584718 -24277909 + MLT1C LTR MaLR 1 460 -7 204 40 0 0 chr9 93584766 93584791 -24277836 + (CCCCCA)n Simple_repeat Simple_repeat 5 29 0 957 301 112 3 chr9 93585065 93585404 -24277223 + LTR16A LTR ERVL 1 376 -74 324 0 0 0 chr9 93585512 93585548 -24277079 + (TG)n Simple_repeat Simple_repeat 2 37 0 638 165 0 0 chr9 93585548 93585651 -24276976 - FLAM_C SINE Alu -26 117 15 1950 266 85 76 chr9 93585856 93586069 -24276558 + HAL1b LINE L1 56 266 -1082 2156 100 4 4 chr9 93586069 93586373 -24276254 - AluSc SINE Alu 0 304 1 1950 266 85 76 chr9 93586373 93586393 -24276234 + HAL1b LINE L1 266 284 -1064 1615 180 18 4 chr9 93586393 93586543 -24276084 - AluJo SINE Alu -30 282 125 189 0 0 0 chr9 93586543 93586564 -24276063 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1615 180 18 4 chr9 93586564 93586691 -24275936 - AluJo SINE Alu -187 125 1 1950 266 85 76 chr9 93586691 93587455 -24275172 + HAL1b LINE L1 284 1071 -277 2184 122 0 20 chr9 93587455 93587758 -24274869 + AluSx SINE Alu 3 299 -13 1950 266 85 76 chr9 93587758 93588032 -24274595 + HAL1b LINE L1 1071 1341 -7 310 192 39 26 chr9 93588176 93588254 -24274373 - L1MCa LINE L1 -4354 2072 1994 360 258 136 56 chr9 93588498 93588696 -24273931 - MIR SINE MIR -15 247 34 420 222 205 22 chr9 93588970 93589155 -24273472 - MIR SINE MIR -3 259 41 318 185 15 0 chr9 93589155 93589220 -24273407 + MER52A LTR ERV1 1 66 -1689 7393 181 118 24 chr9 93590010 93591573 -24271054 + MER52A LTR ERV1 46 1755 0 244 252 0 0 chr9 93591681 93591740 -24270887 + MIR SINE MIR 43 102 -106 1875 68 0 0 chr9 93592215 93592435 -24270192 - AluY SINE Alu -16 295 76 2027 161 0 3 chr9 93592458 93592763 -24269864 - AluJo SINE Alu -8 304 1 197 179 0 18 chr9 93593211 93593267 -24269360 + (TCCA)n Simple_repeat Simple_repeat 4 58 0 284 343 17 6 chr9 93593317 93593492 -24269135 + (TCCA)n Simple_repeat Simple_repeat 1 177 0 311 113 19 0 chr9 93593740 93593793 -24268834 + GA-rich Low_complexity Low_complexity 2 55 0 187 215 308 0 chr9 93594162 93594227 -24268400 - MIR SINE MIR -70 192 108 494 204 39 0 chr9 93594362 93594465 -24268162 + MIR SINE MIR 109 215 -47 755 337 93 33 chr9 93594510 93595494 -24267133 - L2 LINE L2 -4 3268 2221 231 88 0 0 chr9 93595782 93595816 -24266811 + (TCC)n Simple_repeat Simple_repeat 2 35 0 206 211 0 53 chr9 93596051 93596108 -24266519 - L3 LINE CR1 -125 1452 1399 182 313 83 0 chr9 93596355 93596451 -24266176 - MIR SINE MIR -60 148 45 428 269 14 22 chr9 93597536 93597720 -24264907 - MIR SINE MIR -63 145 8 590 293 31 26 chr9 93597776 93597967 -24264660 - MIR SINE MIR -12 250 59 800 187 152 0 chr9 93597972 93598170 -24264457 + MIR SINE MIR 14 241 -21 923 273 90 44 chr9 93598177 93598566 -24264061 + MLT1C LTR MaLR 1 407 -60 2332 114 0 0 chr9 93598610 93598917 -24263710 - AluSq SINE Alu -6 307 1 291 241 102 1 chr9 93600330 93600445 -24262182 - MIR SINE MIR -62 146 21 215 340 70 42 chr9 93600703 93600944 -24261683 - L2 LINE L2 -337 2977 2730 2238 87 3 3 chr9 93602025 93602312 -24260315 + AluSq SINE Alu 12 298 -15 1040 102 11 11 chr9 93602321 93602497 -24260130 + L1PA11 LINE L1 5997 6172 -2 206 236 22 90 chr9 93602503 93602592 -24260035 - MIR SINE MIR -108 154 72 198 311 16 0 chr9 93602805 93602866 -24259761 + L2 LINE L2 3246 3307 -6 446 310 83 35 chr9 93603135 93603364 -24259263 + MIR SINE MIR 2 241 -21 684 198 9 101 chr9 93604067 93604284 -24258343 - MIR SINE MIR 0 262 66 791 244 66 5 chr9 93604694 93604907 -24257720 + MIR SINE MIR 34 259 -3 214 288 50 0 chr9 93605179 93605259 -24257368 - MIR SINE MIR -103 105 22 2647 96 0 6 chr9 93606315 93606681 -24255946 - THE1B LTR MaLR 0 364 1 392 291 184 15 chr9 93607125 93607331 -24255296 + L2 LINE L2 3002 3242 -71 237 263 0 79 chr9 93607397 93607473 -24255154 - MIR SINE MIR 0 262 193 293 363 16 0 chr9 93607577 93607701 -24254926 - MIR SINE MIR -55 207 82 189 357 84 19 chr9 93608448 93608661 -24253966 + L2 LINE L2 2615 2841 -473 187 235 100 95 chr9 93608686 93608886 -24253741 + L2 LINE L2 2965 3165 -107 1514 148 30 0 chr9 93608975 93609205 -24253422 - AluJo SINE Alu -55 257 21 216 97 0 0 chr9 93609228 93609259 -24253368 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 2000 127 143 13 chr9 93609394 93609773 -24252854 + MSTA LTR MaLR 1 428 0 218 327 84 19 chr9 93609858 93609965 -24252662 - MIR SINE MIR -61 147 34 2142 85 0 43 chr9 93610150 93610456 -24252171 + AluSc SINE Alu 13 306 0 199 250 47 16 chr9 93610736 93610800 -24251827 - MIR SINE MIR -62 146 81 249 270 63 27 chr9 93611162 93611273 -24251354 - MIR3 SINE MIR -24 184 70 271 358 58 7 chr9 93611775 93611912 -24250715 + L2 LINE L2 3170 3313 0 266 278 0 0 chr9 93611912 93611984 -24250643 + (TGAA)n Simple_repeat Simple_repeat 2 73 0 886 255 13 22 chr9 93612534 93612765 -24249862 - MIR SINE MIR -6 256 28 625 269 38 6 chr9 93613436 93613596 -24249031 + MER91A DNA MER1_type 1 165 -31 204 338 14 36 chr9 93613750 93613889 -24248738 + (CCCTAA)n Simple_repeat Simple_repeat 6 141 0 195 348 0 0 chr9 93614318 93614387 -24248240 - MIR SINE MIR -148 114 46 299 260 115 0 chr9 93614435 93614539 -24248088 + L2 LINE L2 3133 3248 -24 222 296 92 0 chr9 93614677 93614775 -24247852 + MIR3 SINE MIR 97 203 -5 227 289 105 46 chr9 93615590 93615742 -24246885 - L2 LINE L2 -530 2784 2624 279 259 166 50 chr9 93616742 93616881 -24245746 - MIR SINE MIR 0 262 108 211 269 97 0 chr9 93616910 93617003 -24245624 + MIR3 SINE MIR 92 193 -15 29 0 0 0 chr9 93617041 93617070 -24245557 + GC_rich Low_complexity Low_complexity 1 29 0 268 315 14 27 chr9 93617395 93617541 -24245086 + (CGGGG)n Simple_repeat Simple_repeat 4 147 0 298 290 94 49 chr9 93619102 93619326 -24243301 - L2 LINE L2 -404 2910 2677 288 336 0 25 chr9 93619439 93619561 -24243066 + L3 LINE CR1 1383 1501 -76 189 259 205 18 chr9 93619599 93619711 -24242916 + MIR SINE MIR 60 192 -70 244 167 21 0 chr9 93619768 93619816 -24242811 + L3 LINE CR1 1528 1576 -1 198 282 27 64 chr9 93619847 93619957 -24242670 - MIR SINE MIR -109 153 48 2026 143 0 14 chr9 93620159 93620480 -24242147 - AluSq SINE Alu 0 317 1 1352 258 33 51 chr9 93620675 93621160 -24241467 - L2 LINE L2 -3 3310 2838 2246 129 3 0 chr9 93621160 93621463 -24241164 + AluSg SINE Alu 1 304 -6 1352 258 33 51 chr9 93621463 93621519 -24241108 - L2 LINE L2 -475 2838 2782 6678 252 103 36 chr9 93621520 93621937 -24240690 + L1MEc LINE L1 1380 1768 -4471 2193 126 0 0 chr9 93621937 93622231 -24240396 + AluSx SINE Alu 1 294 -18 6678 252 103 36 chr9 93622231 93622562 -24240065 + L1MEc LINE L1 1768 2076 -4163 2174 136 10 0 chr9 93622562 93622870 -24239757 + AluJb SINE Alu 2 312 0 6678 252 103 36 chr9 93622870 93626251 -24236376 + L1MEc LINE L1 2076 5768 -471 1534 167 120 0 chr9 93626251 93626526 -24236101 + AluJb SINE Alu 1 308 -4 6678 252 103 36 chr9 93626526 93626553 -24236074 + L1MEc LINE L1 5768 5792 -447 197 160 0 40 chr9 93626596 93626646 -24235981 + (CACCAT)n Simple_repeat Simple_repeat 3 50 0 241 319 0 0 chr9 93626709 93626778 -24235849 + (CCA)n Simple_repeat Simple_repeat 3 71 0 214 328 85 55 chr9 93627596 93627831 -24234796 + L2 LINE L2 3030 3271 -1 2184 139 0 3 chr9 93628776 93629077 -24233550 - AluSx SINE Alu 0 312 13 180 322 17 0 chr9 93629105 93629164 -24233463 + L2 LINE L2 3207 3266 -6 405 167 112 114 chr9 93629502 93629728 -24232899 - MIR SINE MIR -6 256 11 260 174 278 9 chr9 93629895 93630010 -24232617 - MER5B DNA MER1_type 0 178 33 936 117 23 6 chr9 93630010 93630181 -24232446 + CT-rich Low_complexity Low_complexity 3 176 0 2120 115 0 4 chr9 93630181 93630460 -24232167 - AluSg SINE Alu -32 278 1 506 67 13 0 chr9 93630460 93630535 -24232092 + (TTTC)n Simple_repeat Simple_repeat 3 78 0 2104 133 7 13 chr9 93630541 93630843 -24231784 - AluSx SINE Alu 0 312 13 254 135 0 0 chr9 93630889 93630926 -24231701 - AluSx SINE Alu -271 37 1 222 184 0 0 chr9 93630928 93630966 -24231661 - MER5B DNA MER1_type -136 42 5 2038 149 0 0 chr9 93631060 93631348 -24231279 - AluJb SINE Alu -15 297 10 197 281 47 117 chr9 93631637 93631808 -24230819 + L2 LINE L2 3021 3179 -93 330 227 34 42 chr9 93631938 93632057 -24230570 - L2 LINE L2 -212 3060 2943 396 281 12 12 chr9 93632868 93633032 -24229595 + (CTA)n Simple_repeat Simple_repeat 1 164 0 1667 172 42 22 chr9 93633032 93633387 -24229240 + THE1C LTR MaLR 14 375 0 206 315 24 16 chr9 93633397 93633524 -24229103 + (CTA)n Simple_repeat Simple_repeat 1 128 0 241 86 0 0 chr9 93633630 93633665 -24228962 - MER4E LTR ERV1 0 766 732 26 50 0 0 chr9 93633665 93633705 -24228922 + AT_rich Low_complexity Low_complexity 1 40 0 3353 107 15 62 chr9 93633705 93634305 -24228322 - MER4B LTR ERV1 -38 572 1 347 328 3 0 chr9 93634306 93634418 -24228209 - MIR SINE MIR -59 149 39 186 231 0 0 chr9 93634579 93634618 -24228009 + L2 LINE L2 3271 3309 -4 254 346 60 0 chr9 93634842 93634975 -24227652 - MIR SINE MIR -71 191 51 570 308 168 21 chr9 93635604 93635848 -24226779 + L2 LINE L2 2878 3085 -228 2223 89 0 11 chr9 93635848 93636171 -24226456 - AluSc SINE Alu 0 320 1 570 308 168 21 chr9 93636171 93636305 -24226322 + L2 LINE L2 3085 3313 0 196 187 40 27 chr9 93636508 93636583 -24226044 - L3 LINE CR1 -78 1499 1424 281 206 0 0 chr9 93636983 93637056 -24225571 - MER5A DNA MER1_type -113 76 4 181 301 48 12 chr9 93637065 93637148 -24225479 - MIR SINE MIR -63 145 60 319 207 24 49 chr9 93638087 93638169 -24224458 - MIR SINE MIR -88 120 41 389 279 18 9 chr9 93638283 93638394 -24224233 + MIR3 SINE MIR 46 157 -51 418 263 27 49 chr9 93639019 93639197 -24223430 + MIR SINE MIR 4 176 -32 379 250 22 11 chr9 93639535 93639627 -24223000 - L2 LINE L2 -1 3271 3179 732 163 34 0 chr9 93639627 93639959 -24222668 + (TGGA)n Simple_repeat Simple_repeat 1 343 0 294 333 72 9 chr9 93639987 93640098 -24222529 + L2 LINE L2 3193 3310 -3 842 209 60 38 chr9 93640105 93640340 -24222287 + MIR SINE MIR 15 254 -8 197 232 12 61 chr9 93641388 93641470 -24221157 - MIR SINE MIR -72 136 59 431 256 16 16 chr9 93641718 93641843 -24220784 + MIR SINE MIR 61 185 -77 207 130 56 0 chr9 93643322 93643376 -24219251 + GA-rich Low_complexity Low_complexity 2 58 0 247 256 23 23 chr9 93643378 93643464 -24219163 + (CAGAGA)n Simple_repeat Simple_repeat 2 87 0 * 323 344 6 6 chr9 93643417 93643597 -24219030 + GA-rich Low_complexity Low_complexity 1 180 0 197 278 26 78 chr9 93643967 93644082 -24218545 + MIR3 SINE MIR 14 122 -86 239 274 0 0 chr9 93644648 93644699 -24217928 - MIR SINE MIR -181 81 31 651 256 121 10 chr9 93644927 93645126 -24217501 + MIR SINE MIR 23 243 -19 519 225 101 0 chr9 93645171 93645300 -24217327 - MIR SINE MIR -74 188 47 527 200 19 19 chr9 93645360 93645520 -24217107 + CT-rich Low_complexity Low_complexity 1 160 0 235 242 16 0 chr9 93645520 93645582 -24217045 - L2 LINE L2 -2 3311 3249 297 244 168 0 chr9 93646284 93646415 -24216212 + L2 LINE L2 2921 3073 -240 2433 226 26 12 chr9 93646419 93646771 -24215856 + MLT1G LTR MaLR 3 367 -223 1733 217 68 56 chr9 93646771 93647268 -24215359 - MLT1D LTR MaLR -2 503 1 2433 226 26 12 chr9 93647268 93647481 -24215146 + MLT1G LTR MaLR 367 576 -14 344 219 104 49 chr9 93647525 93647649 -24214978 + L2 LINE L2 3103 3219 -94 2001 150 16 3 chr9 93647649 93647955 -24214672 - AluSx SINE Alu -2 310 1 344 219 104 49 chr9 93647955 93647981 -24214646 + L2 LINE L2 3219 3242 -71 2012 124 157 5 chr9 93647981 93648351 -24214276 - MSTA LTR MaLR -2 426 1 344 219 104 49 chr9 93648351 93648382 -24214245 + L2 LINE L2 3242 3295 -18 357 291 17 8 chr9 93648388 93648505 -24214122 + L2 LINE L2 3139 3256 -16 1119 217 105 117 chr9 93648777 93648841 -24213786 - MLT2B1 LTR ERVL 0 414 351 243 0 0 0 chr9 93648841 93648868 -24213759 + (CA)n Simple_repeat Simple_repeat 2 28 0 1119 217 105 117 chr9 93648868 93649222 -24213405 - MLT2B1 LTR ERVL -63 351 1 732 277 103 23 chr9 93649222 93649522 -24213105 + LTR33 LTR ERVL 24 347 -174 1644 167 26 39 chr9 93650193 93650499 -24212128 + AluJo SINE Alu 1 302 -10 260 294 133 56 chr9 93650878 93651058 -24211569 + L2 LINE L2 3118 3311 -2 374 340 58 24 chr9 93651622 93651828 -24210799 + MIR SINE MIR 39 251 -11 229 282 77 0 chr9 93652428 93652506 -24210121 - L2 LINE L2 0 3313 3230 369 317 70 18 chr9 93652565 93652792 -24209835 - L2 LINE L2 -833 2481 2243 270 253 0 0 chr9 93652854 93652937 -24209690 + (ATG)n Simple_repeat Simple_repeat 1 83 0 310 261 63 42 chr9 93652937 93653079 -24209548 - MIR SINE MIR -1 261 117 354 23 0 0 chr9 93653118 93653161 -24209466 + (GA)n Simple_repeat Simple_repeat 2 44 0 1661 138 71 4 chr9 93653185 93653438 -24209189 - AluJb SINE Alu -35 277 8 483 217 0 0 chr9 93654286 93654443 -24208184 + (TG)n Simple_repeat Simple_repeat 1 157 0 525 290 12 0 chr9 93654558 93654727 -24207900 + CT-rich Low_complexity Low_complexity 1 171 0 316 281 81 19 chr9 93655232 93655392 -24207235 - MIR3 SINE MIR -2 206 37 1844 158 11 7 chr9 93655604 93655889 -24206738 - AluJb SINE Alu -26 286 1 2008 166 61 20 chr9 93655970 93656379 -24206248 + MSTB LTR MaLR 1 426 0 190 103 0 0 chr9 93659118 93659147 -24203480 + L2 LINE L2 3285 3313 0 330 243 19 39 chr9 93659150 93659253 -24203374 - MIR3 SINE MIR -3 205 105 286 313 61 17 chr9 93659618 93659733 -24202894 + MIR SINE MIR 46 165 -97 287 305 15 73 chr9 93660112 93660231 -24202396 + MIR SINE MIR 22 95 -113 923 186 55 10 chr9 93660231 93660430 -24202197 + MER3 DNA MER1_type 1 208 -1 287 305 15 73 chr9 93660430 93660466 -24202161 + MIR SINE MIR 95 132 -76 711 258 65 18 chr9 93660825 93661054 -24201573 + MIR SINE MIR 9 248 -14 220 336 239 0 chr9 93661678 93661812 -24200815 - L2 LINE L2 -6 3266 3101 735 170 220 55 chr9 93661819 93661931 -24200696 + MER96B DNA MER1_type? 4 96 -321 2285 101 0 3 chr9 93661931 93662228 -24200399 - AluSq SINE Alu -17 296 1 735 170 220 55 chr9 93662228 93662315 -24200312 + MER96B DNA MER1_type? 96 236 -181 717 270 77 10 chr9 93662374 93662570 -24200057 - MER63A DNA MER1_type 0 210 2 217 317 113 58 chr9 93662608 93662848 -24199779 - L2 LINE L2 -213 3059 2807 2318 84 3 0 chr9 93662985 93663269 -24199358 - AluSp SINE Alu -26 287 3 1809 220 13 2 chr9 93663269 93663665 -24198962 + MER63B DNA MER1_type 8 407 -29 460 226 36 167 chr9 93664041 93664293 -24198334 - MIR SINE MIR -4 258 40 231 239 42 56 chr9 93664495 93664566 -24198061 - MIR SINE MIR -60 148 79 21 0 0 0 chr9 93664795 93664816 -24197811 + AT_rich Low_complexity Low_complexity 1 21 0 2211 105 3 3 chr9 93664816 93665102 -24197525 - AluSx SINE Alu -26 286 1 773 356 58 17 chr9 93665783 93666131 -24196496 + L3 LINE CR1 895 1256 -321 435 78 0 0 chr9 93666659 93666723 -24195904 + (CA)n Simple_repeat Simple_repeat 1 64 0 283 274 92 49 chr9 93666730 93666894 -24195733 + MIR SINE MIR 7 177 -85 1129 293 75 42 chr9 93667024 93667172 -24195455 - MLT1L LTR MaLR 0 615 473 2285 119 0 0 chr9 93667172 93667484 -24195143 - AluSx SINE Alu 0 312 1 1129 293 75 42 chr9 93667484 93667885 -24194742 - MLT1L LTR MaLR -142 473 48 213 211 0 0 chr9 93667953 93668005 -24194622 + CT-rich Low_complexity Low_complexity 3 54 0 473 284 27 20 chr9 93668441 93668589 -24194038 + MIR3 SINE MIR 39 187 -21 180 250 42 56 chr9 93668581 93668653 -24193974 - L2 LINE L2 -475 2839 2769 * 241 347 13 0 chr9 93669031 93669106 -24193521 - L2 LINE L2 -46 3267 3192 362 310 95 92 chr9 93669180 93669506 -24193121 + L2 LINE L2 2985 3311 -2 282 316 21 0 chr9 93669601 93669696 -24192931 - L2 LINE L2 0 3272 3176 853 131 0 0 chr9 93670175 93670297 -24192330 + FLAM_C SINE Alu 1 122 -21 252 0 0 0 chr9 93670297 93670325 -24192302 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 193 222 22 0 chr9 93670340 93670385 -24192242 - L2 LINE L2 -5 3308 3263 308 306 0 0 chr9 93670934 93671019 -24191608 - MIR3 SINE MIR -21 187 103 194 316 20 61 chr9 93671780 93671878 -24190749 - L2 LINE L2 0 3272 3179 272 257 14 27 chr9 93672168 93672242 -24190385 + MIR SINE MIR 20 92 -170 379 165 0 68 chr9 93672396 93672529 -24190098 + MER96B DNA MER1_type? 61 184 -233 23 0 0 0 chr9 93673029 93673052 -24189575 + GC_rich Low_complexity Low_complexity 1 23 0 503 260 44 92 chr9 93674346 93674518 -24188109 - L1MEc LINE L1 -3922 2322 2143 2034 133 10 7 chr9 93674518 93674826 -24187801 - AluJb SINE Alu -2 310 2 503 260 44 92 chr9 93674826 93675152 -24187475 - L1MEc LINE L1 -4101 2143 1859 1137 150 0 0 chr9 93675157 93675330 -24187297 - AluSg/x SINE Alu -18 292 120 267 31 0 0 chr9 93675626 93675658 -24186969 + (TG)n Simple_repeat Simple_repeat 2 33 0 301 260 30 0 chr9 93675994 93676094 -24186533 + MIR3 SINE MIR 91 193 -15 228 229 0 36 chr9 93676406 93676489 -24186138 + C-rich Low_complexity Low_complexity 3 82 0 29 60 0 0 chr9 93676720 93676770 -24185857 + GC_rich Low_complexity Low_complexity 1 50 0 39 82 0 22 chr9 93676839 93676974 -24185653 + GC_rich Low_complexity Low_complexity 1 132 0 512 313 130 0 chr9 93677982 93678174 -24184453 + MIR SINE MIR 46 262 0 371 145 14 159 chr9 93679131 93679269 -24183358 + MIR3 SINE MIR 82 199 -9 404 329 7 0 chr9 93679802 93679945 -24182682 + MER103 DNA DNA 16 159 -7 2386 61 0 3 chr9 93680374 93680669 -24181958 - AluY SINE Alu -17 294 1 510 317 210 23 chr9 93680706 93680771 -24181856 - L2 LINE L2 0 3272 3220 866 148 0 15 chr9 93680771 93680906 -24181721 + FLAM_A SINE Alu 1 133 0 510 317 210 23 chr9 93680906 93681140 -24181487 - L2 LINE L2 -52 3220 2917 1101 267 128 9 chr9 93681173 93681603 -24181024 - MLT1L LTR MaLR 0 615 135 594 319 38 6 chr9 93682111 93682318 -24180309 - MIR SINE MIR -32 230 16 370 349 0 8 chr9 93682529 93682661 -24179966 - MIR3 SINE MIR -70 138 8 248 186 0 0 chr9 93683095 93683138 -24179489 + MIR SINE MIR 111 153 -109 2151 82 0 0 chr9 93683181 93683460 -24179167 + AluSc SINE Alu 14 292 -17 703 274 133 17 chr9 93684269 93684503 -24178124 + MIR SINE MIR 2 262 0 184 333 32 41 chr9 93685150 93685273 -24177354 - MIR3 SINE MIR -4 204 83 376 221 0 0 chr9 93685309 93685386 -24177241 - MIR SINE MIR -72 190 114 1001 160 5 7 chr9 93685496 93685938 -24176689 + (TCCA)n Simple_repeat Simple_repeat 1 441 0 1013 144 9 2 chr9 93685958 93686367 -24176260 + (TCCA)n Simple_repeat Simple_repeat 1 592 0 481 306 112 26 chr9 93686534 93686870 -24175757 - L2 LINE L2 -207 3065 2680 1247 192 18 0 chr9 93686870 93687089 -24175538 + MER58A DNA MER1_type 1 223 -1 481 306 112 26 chr9 93687089 93687233 -24175394 - L2 LINE L2 -592 2680 2550 298 318 93 28 chr9 93688342 93688449 -24174178 - MIR SINE MIR -130 132 19 183 228 203 13 chr9 93688525 93688604 -24174023 - MIR3 SINE MIR -27 181 88 432 360 128 33 chr9 93689075 93689411 -24173216 - L2 LINE L2 0 3313 2946 256 309 60 24 chr9 93689405 93689489 -24173138 + MIR SINE MIR 93 179 -83 * 204 125 0 0 chr9 93689486 93689518 -24173109 + L2 LINE L2 3264 3295 -18 * 222 229 10 135 chr9 93689566 93689662 -24172965 + MIR3 SINE MIR 83 166 -42 317 269 48 39 chr9 93689764 93689868 -24172759 - MIR SINE MIR -68 140 36 382 237 79 66 chr9 93690198 93690350 -24172277 - L2 LINE L2 0 3313 3160 348 270 32 40 chr9 93690419 93690545 -24172082 - MIR SINE MIR -53 209 85 549 305 11 17 chr9 93691248 93691425 -24171202 - MIR3 SINE MIR -11 197 22 207 210 74 74 chr9 93691918 93691999 -24170628 - MIR SINE MIR -162 100 20 245 250 0 29 chr9 93692360 93692428 -24170199 + L3b LINE CR1 1322 1387 -196 599 258 153 9 chr9 93693854 93694083 -24168544 - MIR SINE MIR 0 262 1 512 269 149 53 chr9 93696517 93696818 -24165809 + MER102a DNA MER1_type 1 330 0 374 343 15 7 chr9 93697801 93697938 -24164689 - MIR3 SINE MIR -38 170 33 1882 155 0 7 chr9 93698070 93698373 -24164254 - AluJb SINE Alu -11 301 1 233 344 12 57 chr9 93698434 93698636 -24163991 - MIR3 SINE MIR -70 192 5 214 229 189 85 chr9 93698969 93699122 -24163505 + MIR SINE MIR 40 208 -54 2005 116 43 0 chr9 93699131 93699407 -24163220 + AluSx SINE Alu 1 288 -24 212 257 71 0 chr9 93699451 93699521 -24163106 + MIR SINE MIR 79 153 -55 529 230 9 9 chr9 93700190 93700303 -24162324 + MIR SINE MIR 80 192 -70 1688 109 0 4 chr9 93700590 93700820 -24161807 - AluSg/x SINE Alu -17 293 65 1085 276 61 3 chr9 93700838 93701230 -24161397 - LTR33 LTR ERVL -51 470 56 357 148 12 99 chr9 93701285 93701366 -24161261 - MIR SINE MIR -108 154 81 474 297 36 31 chr9 93701459 93701654 -24160973 - MIR3 SINE MIR -1 207 12 263 257 162 0 chr9 93702555 93702629 -24159998 - MIR3 SINE MIR -54 154 69 441 216 35 35 chr9 93702684 93702800 -24159827 + MIR SINE MIR 47 162 -100 432 300 157 22 chr9 93702974 93703204 -24159423 - MIR SINE MIR 0 262 2 338 278 83 53 chr9 93703669 93703838 -24158789 - MIR SINE MIR -37 225 52 269 281 114 33 chr9 93703944 93704154 -24158473 - L2 LINE L2 -534 2780 2554 346 320 184 5 chr9 93704157 93704363 -24158264 - MIR SINE MIR -18 244 2 246 377 99 54 chr9 93704470 93704693 -24157934 - L2 LINE L2 -40 3232 3000 267 243 103 47 chr9 93705481 93705588 -24157039 - MIR SINE MIR -31 231 119 736 248 38 24 chr9 93706225 93706435 -24156192 - MIR SINE MIR -21 241 29 2130 116 7 3 chr9 93706440 93706750 -24155877 - AluSx SINE Alu -1 311 1 370 313 17 9 chr9 93706930 93707045 -24155582 + MIR3 SINE MIR 71 186 -22 255 371 52 0 chr9 93707149 93707265 -24155362 - MIR3 SINE MIR -4 204 83 317 304 20 10 chr9 93708400 93708502 -24154125 + MIR SINE MIR 30 132 -76 1595 162 81 0 chr9 93708667 93708788 -24153839 + AluJo SINE Alu 1 111 -201 321 50 50 0 chr9 93708788 93708848 -24153779 + (TAA)n Simple_repeat Simple_repeat 2 64 0 1595 162 81 0 chr9 93708848 93708997 -24153630 + AluJo SINE Alu 111 293 -19 314 355 12 18 chr9 93709007 93709176 -24153451 - L2 LINE L2 -208 3064 2897 211 219 0 0 chr9 93709459 93709500 -24153127 - L2 LINE L2 -2 3311 3271 215 290 65 11 chr9 93710092 93710185 -24152442 - L2 LINE L2 -50 3263 3166 181 377 135 0 chr9 93710392 93710607 -24152020 - L2 LINE L2 -510 2804 2561 185 250 21 0 chr9 93710906 93710954 -24151673 - L2 LINE L2 -31 3241 3193 554 211 24 8 chr9 93711189 93711312 -24151315 - MIR SINE MIR -108 154 30 300 338 30 15 chr9 93711398 93711664 -24150963 - L1ME4a LINE L1 -228 5893 5624 203 256 0 0 chr9 93711668 93711711 -24150916 + MIR SINE MIR 28 70 -192 235 122 24 0 chr9 93711711 93711752 -24150875 - MER66B LTR ERV1 0 486 445 183 317 19 58 chr9 93713093 93713197 -24149430 - MIR SINE MIR -72 136 37 461 342 15 35 chr9 93713512 93713711 -24148916 - L1ME4a LINE L1 -1857 4289 4095 188 323 15 0 chr9 93713807 93713872 -24148755 - L2 LINE L2 0 3272 3207 1849 143 20 7 chr9 93713920 93714221 -24148406 - AluJo SINE Alu -7 305 1 229 114 0 0 chr9 93714442 93714477 -24148150 - MIR SINE MIR -92 116 82 214 283 17 0 chr9 93714837 93714897 -24147730 + MIR SINE MIR 2 62 -200 589 93 0 21 chr9 93714903 93715000 -24147627 - L1PA11 LINE L1 0 6174 6080 278 349 113 33 chr9 93715203 93715415 -24147212 + MIR SINE MIR 28 256 -6 225 178 0 0 chr9 93715614 93715659 -24146968 + (TG)n Simple_repeat Simple_repeat 1 45 0 355 257 34 1 chr9 93715660 93715758 -24146869 - MIR SINE MIR -62 146 47 368 334 22 3 chr9 93716120 93716274 -24146353 + MIR SINE MIR 22 148 -60 450 338 68 24 chr9 93717918 93718125 -24144502 - MIR SINE MIR -12 250 35 264 318 74 15 chr9 93718930 93719095 -24143532 + MIR SINE MIR 21 205 -3 382 283 9 9 chr9 93719112 93719225 -24143402 + MIR SINE MIR 8 120 -142 272 341 154 20 chr9 93719447 93719693 -24142934 + L2 LINE L2 2976 3254 -18 342 263 150 56 chr9 93720808 93721021 -24141606 - L2 LINE L2 0 3313 3081 380 345 18 0 chr9 93721053 93721166 -24141461 - MER5B DNA MER1_type -61 117 3 252 198 105 0 chr9 93721197 93721265 -24141362 - MIR3 SINE MIR -133 75 8 459 238 118 29 chr9 93721390 93721597 -24141030 + MIR3 SINE MIR 10 255 -7 257 265 29 0 chr9 93721542 93721610 -24141017 + L2 LINE L2 3203 3272 0 * 1096 158 50 63 chr9 93721788 93722010 -24140617 + MER20 DNA MER1_type 1 219 0 272 331 90 49 chr9 93722061 93722429 -24140198 + L2 LINE L2 2853 3235 -37 382 277 40 0 chr9 93723025 93723126 -24139501 + L2 LINE L2 3209 3313 0 211 259 93 0 chr9 93723306 93723360 -24139267 - MIR SINE MIR -72 136 78 483 301 29 40 chr9 93724202 93724375 -24138252 + MIR3 SINE MIR 37 207 -1 469 289 33 11 chr9 93724534 93724718 -24137909 + MIR SINE MIR 44 230 -32 935 234 115 74 chr9 93725223 93725559 -24137068 + L2 LINE L2 2807 3171 -142 1120 125 33 5 chr9 93725559 93725743 -24136884 - L1MB2 LINE L1 0 6171 5983 935 234 115 74 chr9 93725743 93725893 -24136734 + L2 LINE L2 3171 3313 0 345 331 69 15 chr9 93725912 93726127 -24136500 - MIR SINE MIR 0 262 26 321 333 22 43 chr9 93726481 93726619 -24136008 + MIR SINE MIR 67 201 -61 302 336 186 7 chr9 93726739 93726879 -24135748 - MIR3 SINE MIR -1 207 43 216 290 37 56 chr9 93728707 93728814 -24133813 - MIR3 SINE MIR -14 194 90 347 356 38 0 chr9 93729586 93729746 -24132881 - MIR3 SINE MIR -24 184 19 473 237 15 30 chr9 93730332 93730463 -24132164 + MIR SINE MIR 21 149 -113 835 266 7 68 chr9 93730612 93730776 -24131851 + MIR SINE MIR 2 144 -118 2129 115 0 34 chr9 93730776 93731099 -24131528 + AluSx SINE Alu 1 312 0 835 266 7 68 chr9 93731099 93731212 -24131415 + MIR SINE MIR 144 262 0 200 324 39 105 chr9 93731252 93731558 -24131069 - L2 LINE L2 -69 3203 2918 262 295 188 20 chr9 93731659 93731808 -24130819 + MIR SINE MIR 56 229 -33 245 310 11 11 chr9 93733098 93733185 -24129442 + MIR3 SINE MIR 113 199 -9 619 245 14 14 chr9 93733474 93733621 -24129006 + MIR SINE MIR 14 160 -102 223 265 45 63 chr9 93734053 93734172 -24128455 - MIR SINE MIR -31 177 41 1873 152 24 0 chr9 93734363 93734653 -24127974 + AluJb SINE Alu 1 297 -15 351 335 79 6 chr9 93734950 93735114 -24127513 + MIR SINE MIR 38 213 -49 241 259 2 84 chr9 93735777 93735897 -24126730 + MIR SINE MIR 63 171 -37 193 301 151 0 chr9 93735907 93735980 -24126647 - MIR3 SINE MIR -9 199 116 382 311 25 8 chr9 93736425 93736547 -24126080 + MIR SINE MIR 6 129 -133 446 298 43 7 chr9 93737125 93737243 -24125384 + MIR SINE MIR 47 172 -90 2225 105 0 3 chr9 93737243 93737547 -24125080 + AluSx SINE Alu 1 303 -9 446 298 43 7 chr9 93737547 93737569 -24125058 + MIR SINE MIR 172 192 -70 332 293 45 30 chr9 93738300 93738433 -24124194 + MIR3 SINE MIR 11 145 -63 226 118 39 39 chr9 93738526 93738577 -24124050 - MIR3 SINE MIR -52 156 106 298 271 62 42 chr9 93739022 93739118 -24123509 + MIR3 SINE MIR 81 178 -30 925 263 26 13 chr9 93739260 93739492 -24123135 + MIR SINE MIR 27 261 -1 271 299 109 25 chr9 93739998 93740147 -24122480 + MIR SINE MIR 4 167 -63 964 246 66 25 chr9 93740176 93740420 -24122207 + MIR SINE MIR 8 261 -1 437 309 27 13 chr9 93740473 93740622 -24122005 + MER117 DNA MER1_type 47 197 0 482 335 33 19 chr9 93740709 93740921 -24121706 - L3 LINE CR1 -20 1557 1343 1792 142 0 14 chr9 93741178 93741459 -24121168 - AluJb SINE Alu -5 307 31 704 143 265 0 chr9 93741520 93741667 -24120960 - MER53 DNA DNA -1 188 3 190 292 221 18 chr9 93741692 93741805 -24120822 - MIR SINE MIR -57 151 16 203 186 34 85 chr9 93742378 93742437 -24120190 - L2 LINE L2 -12 3260 3205 435 294 52 13 chr9 93742846 93742999 -24119628 - MIR SINE MIR -31 231 73 385 311 91 75 chr9 93743278 93743609 -24119018 - L2 LINE L2 -6 3266 2931 522 261 0 49 chr9 93743931 93744073 -24118554 + MIR SINE MIR 47 181 -81 715 258 54 8 chr9 93745059 93745280 -24117347 + MIR SINE MIR 25 246 -16 1888 161 0 7 chr9 93745346 93745650 -24116977 - AluJo SINE Alu -5 307 6 292 294 67 2 chr9 93745692 93745804 -24116823 - MIR SINE MIR -72 136 41 854 196 40 0 chr9 93746373 93746546 -24116081 - MER20 DNA MER1_type 0 219 40 410 310 57 6 chr9 93746546 93746704 -24115923 - MIR SINE MIR -57 205 40 191 338 40 0 chr9 93748101 93748175 -24114452 - MIR SINE MIR -68 194 118 2312 83 0 0 chr9 93749252 93749541 -24113086 + AluSg SINE Alu 1 289 -21 320 357 0 0 chr9 93749619 93749717 -24112910 - MIR3 SINE MIR -15 193 96 207 0 0 0 chr9 93750674 93750697 -24111930 + (A)n Simple_repeat Simple_repeat 1 23 0 22 0 0 0 chr9 93750766 93750788 -24111839 + AT_rich Low_complexity Low_complexity 1 22 0 1820 127 36 45 chr9 93751258 93751566 -24111061 + AluSx SINE Alu 1 305 -7 228 338 109 30 chr9 93752275 93752577 -24110050 + L2 LINE L2 2596 2921 -393 242 310 53 44 chr9 93753649 93753762 -24108865 - MIR SINE MIR -63 145 32 554 299 82 5 chr9 93753799 93753983 -24108644 - MIR SINE MIR -12 250 53 259 287 0 35 chr9 93754240 93754327 -24108300 - MIR SINE MIR -79 129 46 506 303 34 11 chr9 93755248 93755423 -24107204 - MIR SINE MIR -11 251 73 549 187 28 8 chr9 93755834 93755985 -24106642 - MIR SINE MIR -65 143 38 248 331 74 43 chr9 93756474 93756637 -24105990 - MIR SINE MIR -78 184 17 458 317 12 6 chr9 93757275 93757436 -24105191 - MIR SINE MIR -95 167 6 195 42 0 0 chr9 93758120 93758144 -24104483 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 2499 206 31 8 chr9 93759132 93759642 -24102985 - Charlie1b DNA MER1_type 0 523 2 226 220 0 0 chr9 93760174 93760224 -24102403 + L1ME4a LINE L1 5724 5773 -348 1602 107 0 9 chr9 93760379 93760604 -24102023 - AluSc SINE Alu 0 309 87 723 135 29 0 chr9 93760605 93760709 -24101918 + AluSc SINE Alu 9 115 -194 344 275 42 0 chr9 93760727 93760847 -24101780 + L1ME4a LINE L1 5989 6113 -8 478 283 16 71 chr9 93761390 93761574 -24101053 - MIR3 SINE MIR -17 191 18 2255 87 13 7 chr9 93761610 93761919 -24100708 - AluSx SINE Alu -1 311 1 533 198 0 63 chr9 93761942 93762068 -24100559 + MIR3 SINE MIR 45 162 -46 480 299 14 0 chr9 93762406 93762553 -24100074 - MIR SINE MIR -12 250 102 302 324 29 19 chr9 93762664 93762769 -24099858 - MIR3 SINE MIR -15 193 88 1634 191 81 29 chr9 93763468 93763924 -24098703 - Charlie4a DNA MER1_type -8 500 21 234 355 65 32 chr9 93763926 93764050 -24098577 - MIR3 SINE MIR -27 181 54 457 147 53 0 chr9 93764325 93764400 -24098227 - MADE1 DNA Mariner -1 79 1 569 282 120 29 chr9 93764408 93764617 -24098010 - MIR SINE MIR -11 251 24 187 347 42 0 chr9 93764773 93764845 -24097782 + L2 LINE L2 3148 3222 -50 244 198 143 66 chr9 93765516 93765607 -24097020 - MIR SINE MIR -98 164 67 * 267 216 34 80 chr9 93765590 93765678 -24096949 + MIR SINE MIR 178 261 -1 413 279 50 31 chr9 93767468 93767629 -24094998 - MIR3 SINE MIR -42 166 3 333 330 28 9 chr9 93767681 93767790 -24094837 - MIR SINE MIR -62 200 90 336 148 0 0 chr9 93767871 93767932 -24094695 + (TCC)n Simple_repeat Simple_repeat 3 63 0 654 164 0 97 chr9 93768055 93768189 -24094438 - AluJo SINE Alu -145 167 47 1857 106 0 35 chr9 93768294 93768578 -24094049 + AluSp SINE Alu 25 298 -15 282 320 41 0 chr9 93768655 93768752 -24093875 - L2 LINE L2 -2 3270 3170 229 256 120 26 chr9 93769834 93769951 -24092676 + MIR3 SINE MIR 73 200 -8 195 340 90 10 chr9 93770159 93770259 -24092368 + MIR3 SINE MIR 61 168 -40 381 232 63 1 chr9 93770593 93770703 -24091924 - MIR SINE MIR -73 135 19 326 371 28 0 chr9 93770853 93770996 -24091631 + MIR SINE MIR 108 254 -8 291 372 191 0 chr9 93772190 93772405 -24090222 + MIR SINE MIR 7 262 0 438 276 1 17 chr9 93772409 93772552 -24090075 - MIR SINE MIR -53 155 15 209 290 37 75 chr9 93772945 93773052 -24089575 - L2 LINE L2 -173 3099 2997 508 76 76 0 chr9 93773072 93773151 -24089476 - L1MA5 LINE L1 -66 6234 6150 236 100 80 0 chr9 93773150 93773200 -24089427 + L1MA5 LINE L1 6245 6298 -2 * 2029 137 137 13 chr9 93773387 93773768 -24088859 + MSTA LTR MaLR 1 428 0 183 100 0 0 chr9 93773935 93773965 -24088662 + (CAGGG)n Simple_repeat Simple_repeat 1 30 0 309 397 98 13 chr9 93774798 93775022 -24087605 + MIR SINE MIR 20 262 0 2218 115 3 0 chr9 93775042 93775354 -24087273 + AluSp SINE Alu 1 313 0 336 316 132 7 chr9 93776954 93777090 -24085537 + MIR SINE MIR 92 244 -18 308 234 32 43 chr9 93777121 93777215 -24085412 - L2 LINE L2 -19 3253 3161 232 26 0 51 chr9 93777320 93777359 -24085268 + (TAA)n Simple_repeat Simple_repeat 2 38 0 1129 163 108 0 chr9 93777783 93778034 -24084593 + L1M4 LINE L1 5327 5604 -570 259 344 92 23 chr9 93778098 93778229 -24084398 - MIR3 SINE MIR -62 146 7 * 355 315 148 23 chr9 93778171 93778387 -24084240 + MIR SINE MIR 18 260 -2 356 164 14 14 chr9 93778584 93778657 -24083970 - Tigger5 DNA MER2_type 0 2323 2251 279 196 0 18 chr9 93778626 93778682 -24083945 - Tigger5 DNA MER2_type -2268 55 1 * 292 183 366 0 chr9 93778986 93779079 -24083548 - MIR SINE MIR -44 218 92 1781 144 7 13 chr9 93779367 93779672 -24082955 + AluSx SINE Alu 3 305 -7 376 283 35 15 chr9 93780115 93780303 -24082324 - MIR3 SINE MIR -61 147 3 756 220 6 0 chr9 93780347 93780515 -24082112 + L1MC3 LINE L1 7412 7580 -205 1044 191 10 5 chr9 93780525 93780719 -24081908 + L1MC2 LINE L1 6139 6333 -11 329 269 7 99 chr9 93780793 93780934 -24081693 + L2 LINE L2 3186 3313 0 583 291 32 31 chr9 93781821 93782073 -24080554 - MIR SINE MIR -1 261 9 232 321 47 0 chr9 93782234 93782340 -24080287 + L2 LINE L2 2997 3107 -165 282 29 0 0 chr9 93782410 93782445 -24080182 + (TGAA)n Simple_repeat Simple_repeat 4 38 0 906 250 52 28 chr9 93782494 93782742 -24079885 + MIR SINE MIR 8 261 -1 737 203 31 12 chr9 93782765 93782928 -24079699 - MIR3 SINE MIR -26 182 17 393 336 0 0 chr9 93783832 93783945 -24078682 + MIR SINE MIR 133 245 -17 253 250 0 0 chr9 93784121 93784181 -24078446 - MIR SINE MIR -100 162 103 180 77 0 0 chr9 93784615 93784641 -24077986 + (TA)n Simple_repeat Simple_repeat 2 27 0 1940 132 7 11 chr9 93784641 93784928 -24077699 - AluSx SINE Alu -26 286 1 288 0 0 0 chr9 93785210 93785242 -24077385 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 313 371 95 22 chr9 93785691 93785923 -24076704 - MIR SINE MIR 0 262 14 305 341 106 12 chr9 93785884 93786054 -24076573 + MIR SINE MIR 58 243 -19 * 435 221 11 0 chr9 93786500 93786619 -24076008 + MIR SINE MIR 104 223 -39 2209 82 4 0 chr9 93786768 93787069 -24075558 - AluSg SINE Alu 0 302 1 658 316 96 67 chr9 93788843 93789681 -24072946 + L2 LINE L2 2364 3222 -50 256 171 105 13 chr9 93790259 93790335 -24072292 + MIR SINE MIR 30 112 -96 1750 168 0 46 chr9 93791083 93791410 -24071217 + AluJo SINE Alu 1 312 0 3005 104 16 5 chr9 93791422 93791865 -24070762 + L1MD1 LINE L1 5792 6239 -3 2121 120 3 0 chr9 93791865 93792157 -24070470 + AluSx SINE Alu 1 293 -19 2252 92 0 0 chr9 93792190 93792485 -24070142 + AluSg SINE Alu 1 295 -15 424 212 34 17 chr9 93792495 93792613 -24070014 + L1ME3A LINE L1 5940 6059 -111 780 122 8 0 chr9 93792804 93792927 -24069700 - AluSg/x SINE Alu -2 310 187 386 82 0 16 chr9 93793029 93793090 -24069537 + MADE1 DNA Mariner 21 80 0 1070 129 12 96 chr9 93793090 93793330 -24069297 - L1MB5 LINE L1 -249 5925 5706 634 180 23 41 chr9 93793425 93793597 -24069030 + MER53 DNA DNA 3 171 -18 2059 51 0 8 chr9 93793769 93794023 -24068604 + AluY SINE Alu 1 252 -59 1269 153 19 65 chr9 93794028 93794413 -24068214 - MLT2B1 LTR ERVL -52 362 1 268 308 67 36 chr9 93794420 93794615 -24068012 - L2 LINE L2 -252 3020 2820 286 296 74 0 chr9 93795210 93795291 -24067336 + MIR SINE MIR 60 146 -62 325 218 26 13 chr9 93795346 93795424 -24067203 + MER116 DNA Mariner 2 80 0 405 294 16 72 chr9 93795443 93795637 -24066990 - MIR SINE MIR 0 262 80 264 264 0 23 chr9 93795849 93795936 -24066691 + MIR SINE MIR 68 152 -56 242 316 0 0 chr9 93795939 93796015 -24066612 + HsTC2 DNA Tc2 4 79 -1819 856 114 0 16 chr9 93796151 93796274 -24066353 + FLAM_C SINE Alu 5 125 -18 568 211 0 0 chr9 93796298 93796412 -24066215 - MIR SINE MIR -54 208 95 23 0 0 29 chr9 93796946 93796960 -24065667 + AT_rich Low_complexity Low_complexity 1 14 -19 2114 69 0 14 chr9 93796960 93797235 -24065392 + AluY SINE Alu 28 298 -13 23 0 0 29 chr9 93797235 93797254 -24065373 + AT_rich Low_complexity Low_complexity 14 33 0 527 177 137 0 chr9 93797442 93797566 -24065061 - L1MD2 LINE L1 -4 6355 6215 495 318 84 81 chr9 93797566 93797959 -24064668 + L2 LINE L2 2879 3272 0 195 300 0 29 chr9 93797983 93798053 -24064574 - MIR3 SINE MIR -138 70 3 1838 157 40 0 chr9 93798934 93799374 -24063253 + AluSx SINE Alu 1 452 0 252 184 0 46 chr9 93799405 93799492 -24063135 + A-rich Low_complexity Low_complexity 3 85 0 368 294 15 118 chr9 93799492 93799696 -24062931 + MIR SINE MIR 8 190 -72 1029 120 7 0 chr9 93799837 93799987 -24062640 - AluSg/x SINE Alu -57 253 103 200 351 35 18 chr9 93799988 93800102 -24062525 - L2 LINE L2 -45 3268 3153 232 218 170 68 chr9 93800148 93800295 -24062332 - L2 LINE L2 -3136 178 17 227 324 67 9 chr9 93800700 93800805 -24061822 - L2 LINE L2 -17 3255 3145 296 221 39 26 chr9 93800830 93800907 -24061720 - L2 LINE L2 -6 3266 3189 407 395 44 12 chr9 93801743 93801991 -24060636 + MIR SINE MIR 7 262 0 2284 64 3 10 chr9 93802157 93802452 -24060175 + AluY SINE Alu 1 293 -18 184 276 172 0 chr9 93802513 93802571 -24060056 - MIR SINE MIR -106 102 35 659 304 11 11 chr9 93802616 93802807 -24059820 - MIR SINE MIR -71 191 1 186 349 63 0 chr9 93803412 93803475 -24059152 - L2 LINE L2 -2 3270 3204 237 191 15 29 chr9 93803605 93803673 -24058954 + CT-rich Low_complexity Low_complexity 1 67 0 1576 161 77 0 chr9 93803865 93804138 -24058489 + AluJo SINE Alu 3 296 -16 537 288 29 101 chr9 93804797 93805075 -24057552 - L2 LINE L2 0 3272 3015 382 222 71 0 chr9 93805307 93805406 -24057221 - MIR SINE MIR -21 241 136 519 174 0 0 chr9 93805531 93805617 -24057010 - MIR SINE MIR -141 121 36 248 312 35 35 chr9 93806394 93806535 -24056092 + MIR3 SINE MIR 45 185 -23 351 333 50 19 chr9 93806690 93806849 -24055778 + MIR SINE MIR 20 183 -79 314 320 74 0 chr9 93806904 93807071 -24055556 + MIR SINE MIR 40 217 -45 273 314 136 8 chr9 93807560 93807678 -24054949 - L3 LINE CR1 -15 1562 1430 460 287 63 7 chr9 93807691 93807834 -24054793 + MIR SINE MIR 1 151 -111 310 306 18 27 chr9 93808193 93808304 -24054323 - MIR SINE MIR -65 143 34 255 343 145 14 chr9 93808487 93808694 -24053933 - MIR SINE MIR -6 256 23 2338 100 0 0 chr9 93808880 93809190 -24053437 - AluSg SINE Alu 0 310 1 263 247 31 52 chr9 93809552 93809649 -24052978 + MIR3 SINE MIR 88 182 -26 248 295 74 11 chr9 93809946 93810041 -24052586 + MIR3 SINE MIR 76 176 -32 261 294 33 36 chr9 93810639 93810800 -24051827 + MIR3 SINE MIR 26 184 -24 276 353 69 0 chr9 93811606 93811722 -24050905 + MIR SINE MIR 96 219 -43 208 313 36 18 chr9 93812157 93812269 -24050358 - L2 LINE L2 -288 3025 2912 210 287 21 21 chr9 93813323 93813417 -24049210 + MIR SINE MIR 56 149 -59 232 297 54 0 chr9 93813977 93814051 -24048576 + MIR3 SINE MIR 81 158 -50 456 303 47 60 chr9 93814511 93814693 -24047934 + MIR SINE MIR 25 205 -57 1492 139 0 0 chr9 93814693 93814908 -24047719 + AluJo SINE Alu 86 300 -12 456 303 47 60 chr9 93814908 93814959 -24047668 + MIR SINE MIR 205 255 -7 1072 135 0 0 chr9 93815448 93815604 -24047023 + AluSg/x SINE Alu 156 311 -1 287 258 101 22 chr9 93815662 93815751 -24046876 - L2 LINE L2 -30 3283 3188 448 284 57 28 chr9 93816154 93816330 -24046297 - MIR SINE MIR -80 182 2 590 231 45 8 chr9 93817220 93817354 -24045273 - MIR SINE MIR -123 139 1 231 334 47 29 chr9 93817357 93817496 -24045131 - MIR SINE MIR -63 145 4 194 309 15 0 chr9 93817733 93817801 -24044826 + MIR SINE MIR 66 134 -74 411 270 6 75 chr9 93818053 93818212 -24044415 - MIR SINE MIR -4 258 111 511 280 233 0 chr9 93818598 93818787 -24043840 - MIR SINE MIR 0 262 30 335 299 84 24 chr9 93818805 93818972 -24043655 + MIR3 SINE MIR 13 189 -19 261 206 0 82 chr9 93819571 93819644 -24042983 - L3 LINE CR1 -431 1146 1080 2157 111 35 0 chr9 93819919 93820207 -24042420 + AluSx SINE Alu 1 298 -14 675 250 29 24 chr9 93820314 93820530 -24042097 + MIR SINE MIR 40 256 -6 180 0 0 0 chr9 93820775 93820795 -24041832 + (TTA)n Simple_repeat Simple_repeat 2 21 0 404 206 0 0 chr9 93820903 93820971 -24041656 + AluJ/FLAM SINE Alu 1 68 -244 1355 106 14 43 chr9 93821094 93821301 -24041326 + AluJo SINE Alu 100 300 -12 540 244 118 35 chr9 93822028 93822257 -24040370 + L2 LINE L2 2832 3079 -193 265 293 38 38 chr9 93822289 93822345 -24040282 + L2 LINE L2 3202 3260 -53 2289 125 3 0 chr9 93822345 93822656 -24039971 + AluSx SINE Alu 1 312 0 265 293 38 38 chr9 93822656 93822705 -24039922 + L2 LINE L2 3259 3307 -6 286 275 12 12 chr9 93822965 93823045 -24039582 - MIR SINE MIR -92 116 37 401 246 50 58 chr9 93823936 93824078 -24038549 + MIR SINE MIR 17 161 -68 540 211 14 5 chr9 93824183 93824409 -24038218 + (TGG)n Simple_repeat Simple_repeat 1 228 0 280 311 68 27 chr9 93824992 93825140 -24037487 + MIR SINE MIR 109 262 0 1273 134 20 103 chr9 93825171 93825287 -24037340 - Charlie5 DNA MER1_type -1 2623 2499 1632 182 0 40 chr9 93825287 93825583 -24037044 + AluJo SINE Alu 7 290 -22 1273 134 20 103 chr9 93825583 93825816 -24036811 - Charlie5 DNA MER1_type -125 2499 2303 616 153 68 0 chr9 93825799 93825917 -24036710 - Charlie5 DNA MER1_type -251 2361 2236 * 2065 128 34 3 chr9 93825923 93826220 -24036407 - AluSx SINE Alu -6 306 1 616 162 0 0 chr9 93826224 93826329 -24036298 - MER3 DNA MER1_type -87 122 65 187 279 16 16 chr9 93826338 93826399 -24036228 - MIR SINE MIR -63 145 85 185 351 168 0 chr9 93826561 93826692 -24035935 - L3 LINE CR1 -193 1384 1232 349 287 47 16 chr9 93827782 93827911 -24034716 - MIR SINE MIR -101 161 29 1729 206 8 14 chr9 93828855 93829209 -24033418 + MER63 DNA MER1_type 681 1032 -28 207 301 37 21 chr9 93830278 93830390 -24032237 - MIR SINE MIR -79 129 20 219 250 135 21 chr9 93830688 93830784 -24031843 - L2 LINE L2 -34 3279 3173 196 333 0 0 chr9 93831796 93831856 -24030771 - L2 LINE L2 -9 3304 3245 393 312 46 17 chr9 93832002 93832175 -24030452 - MIR SINE MIR -70 192 15 980 15 0 52 chr9 93832344 93832480 -24030147 + L1PA4 LINE L1 6027 6155 0 256 267 193 0 chr9 93832554 93832689 -24029938 + MIR SINE MIR 81 241 -21 287 314 97 0 chr9 93833561 93833685 -24028942 + MIR SINE MIR 88 223 -39 207 238 119 10 chr9 93833820 93833921 -24028706 - MIR SINE MIR -116 146 35 181 337 0 48 chr9 93837019 93837102 -24025525 - L2 LINE L2 -53 3219 3141 2259 107 3 0 chr9 93837194 93837492 -24025135 + AluSx SINE Alu 8 306 -6 288 227 0 0 chr9 93837951 93838039 -24024588 + (CA)n Simple_repeat Simple_repeat 2 89 0 9981 224 50 47 chr9 93838341 93839677 -24022950 + L1ME1 LINE L1 2154 3485 -2681 2553 64 0 26 chr9 93839677 93839990 -24022637 + AluSg SINE Alu 1 305 -5 9981 224 50 47 chr9 93839990 93841369 -24021258 + L1ME1 LINE L1 3485 4883 -1283 2300 87 37 0 chr9 93841369 93841667 -24020960 - AluSp SINE Alu -4 309 1 9981 224 50 47 chr9 93841667 93842911 -24019716 + L1ME1 LINE L1 4883 6122 -44 313 271 30 36 chr9 93842794 93842960 -24019667 + L1MA10 LINE L1 6169 6333 -1 * 5288 205 134 18 chr9 93843036 93843740 -24018887 + L1ME4a LINE L1 3627 4248 -1914 821 154 8 0 chr9 93843740 93843870 -24018757 + FLAM_A SINE Alu 1 131 -2 5288 205 134 18 chr9 93843870 93844762 -24017865 + L1ME4a LINE L1 4248 5407 -755 356 243 83 21 chr9 93844894 93845038 -24017589 - MIR SINE MIR -70 192 40 389 269 122 30 chr9 93845227 93845424 -24017203 + MIR SINE MIR 48 262 0 206 94 0 0 chr9 93845902 93845934 -24016693 - L2 LINE L2 0 3313 3282 465 250 26 0 chr9 93845994 93846110 -24016517 + MIR SINE MIR 39 157 -105 214 61 30 0 chr9 93846926 93846959 -24015668 + MIR SINE MIR 112 145 -117 2020 106 65 0 chr9 93848164 93848457 -24014170 + AluSx SINE Alu 1 312 0 658 256 32 92 chr9 93848879 93848945 -24013682 - MIR SINE MIR 0 262 194 2400 100 0 0 chr9 93848945 93849254 -24013373 - AluSx SINE Alu -1 311 3 658 256 32 92 chr9 93849254 93849437 -24013190 - MIR SINE MIR -68 194 28 387 267 54 79 chr9 93849580 93849680 -24012947 - L2 LINE L2 -181 3091 2990 898 196 73 0 chr9 93849680 93849884 -24012743 - MER20 DNA MER1_type 0 219 1 387 267 54 79 chr9 93849884 93850185 -24012442 - L2 LINE L2 -282 2990 2697 206 325 75 0 chr9 93850958 93851038 -24011589 - L2 LINE L2 -49 3223 3138 448 216 216 66 chr9 93851302 93851561 -24011066 - MLT1J1 LTR MaLR -148 298 1 199 289 26 0 chr9 93851743 93851819 -24010808 - L3 LINE CR1 -203 1374 1297 342 294 22 15 chr9 93852762 93852898 -24009729 + MIR3 SINE MIR 25 161 -47 232 254 0 0 chr9 93853080 93853135 -24009492 + MIR SINE MIR 89 143 -119 375 287 25 38 chr9 93853567 93853724 -24008903 + MIR3 SINE MIR 47 201 -7 440 260 14 21 chr9 93855617 93855764 -24006863 + L1ME4a LINE L1 5466 5608 -513 * 809 119 10 0 chr9 93855760 93855957 -24006670 + L1PB1 LINE L1 5911 6150 -1 486 232 170 33 chr9 93855983 93856224 -24006403 + L1ME4a LINE L1 5603 5876 -245 303 150 0 0 chr9 93857248 93857308 -24005319 + (A)n Simple_repeat Simple_repeat 1 60 0 21 0 0 0 chr9 93858195 93858216 -24004411 + AT_rich Low_complexity Low_complexity 1 21 0 1313 224 102 15 chr9 93858335 93858746 -24003881 - MLT1C LTR MaLR -20 447 1 722 193 155 9 chr9 93858797 93859010 -24003617 - L1MB5 LINE L1 -8 6166 5923 1735 288 64 38 chr9 93859393 93860192 -24002435 + L2 LINE L2 1431 2250 -1064 355 256 22 53 chr9 93860197 93860424 -24002203 + L1M4 LINE L1 4957 5176 -970 212 304 127 0 chr9 93861557 93861636 -24000991 + MIR SINE MIR 88 176 -86 9846 28 2 0 chr9 93863122 93864343 -23998284 - L1P LINE L1 -901 5245 4023 494 237 52 23 chr9 93865849 93866022 -23996605 + L2 LINE L2 2345 2522 -792 239 238 0 16 chr9 93866016 93866079 -23996548 + L2 LINE L2 3250 3311 -2 * 2263 128 10 0 chr9 93866127 93866431 -23996196 + AluSq SINE Alu 2 308 -5 274 291 34 40 chr9 93866525 93866673 -23995954 + MLT1H LTR MaLR 92 238 -311 257 311 0 0 chr9 93867040 93867114 -23995513 - MIR3 SINE MIR -14 194 121 391 279 0 57 chr9 93868233 93868373 -23994254 + FLAM_A SINE Alu 2 133 0 253 125 20 57 chr9 93868577 93868640 -23993987 + THE1B LTR MaLR 3 68 -307 406 284 226 0 chr9 93869267 93869422 -23993205 + MIR SINE MIR 2 191 -71 444 191 12 12 chr9 93869528 93869612 -23993015 - FRAM SINE Alu -16 160 77 269 292 50 67 chr9 93869614 93869734 -23992893 + MIR SINE MIR 13 130 -132 21 0 0 0 chr9 93871211 93871232 -23991395 + AT_rich Low_complexity Low_complexity 1 21 0 244 307 88 9 chr9 93871531 93871645 -23990982 - MIR SINE MIR -59 203 81 193 238 24 0 chr9 93872825 93872867 -23989760 + MER5B DNA MER1_type 4 46 -132 404 264 52 40 chr9 93872947 93873121 -23989506 - MLT1J2 LTR MaLR -238 212 37 937 153 6 6 chr9 93873939 93874116 -23988511 + CT-rich Low_complexity Low_complexity 2 178 0 1966 142 13 10 chr9 93874789 93875099 -23987528 + AluSx SINE Alu 1 311 -1 270 0 0 0 chr9 93875273 93875303 -23987324 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 272 252 70 35 chr9 93877574 93877689 -23984938 + MIR3 SINE MIR 73 191 -17 410 324 33 44 chr9 93877907 93878153 -23984474 + MIR SINE MIR 11 252 -10 233 88 0 0 chr9 93881437 93881471 -23981156 - Alu SINE Alu -268 34 1 1679 128 65 48 chr9 93881521 93881811 -23980816 - AluJo SINE Alu -17 295 1 1427 222 30 82 chr9 93881895 93881998 -23980629 + L1ME2 LINE L1 5647 5754 -410 2237 106 7 0 chr9 93881998 93882300 -23980327 + AluSc SINE Alu 5 308 -1 1427 222 30 82 chr9 93882300 93882732 -23979895 + L1ME2 LINE L1 5754 6154 -10 256 318 83 40 chr9 93882975 93883302 -23979325 - L2 LINE L2 -385 2929 2589 1187 12 24 31 chr9 93883320 93883577 -23979050 + (TCTA)n Simple_repeat Simple_repeat 1 255 0 2016 124 7 11 chr9 93883577 93883860 -23978767 - AluSx SINE Alu -30 282 1 1469 229 138 46 chr9 93883904 93884467 -23978160 + Zaphod DNA AcHobo 1 615 -3416 1980 131 0 0 chr9 93884505 93884773 -23977854 - AluSx SINE Alu -8 304 37 202 353 16 8 chr9 93887919 93888041 -23974586 + L2 LINE L2 2942 3064 -208 389 293 64 0 chr9 93888385 93888520 -23974107 - MIR3 SINE MIR -7 201 58 996 186 57 0 chr9 93889862 93890056 -23972571 - Tigger3(Golem) DNA MER2_type -2822 207 3 228 317 78 14 chr9 93890706 93890848 -23971779 - Charlie7 DNA MER1_type -2456 156 6 315 280 21 11 chr9 93891013 93891106 -23971521 + MIR SINE MIR 59 152 -110 204 213 131 16 chr9 93891797 93891858 -23970769 - L2 LINE L2 -57 3215 3148 247 247 130 39 chr9 93892077 93892231 -23970396 - L2 LINE L2 -186 3086 2919 431 294 0 7 chr9 93892628 93892774 -23969853 + MIR SINE MIR 24 168 -94 587 257 61 85 chr9 93892871 93893070 -23969557 + MER113 DNA MER1_type? 141 343 -178 2234 59 24 0 chr9 93893070 93893359 -23969268 + L1PA4 LINE L1 5860 6155 0 587 257 61 85 chr9 93893359 93893435 -23969192 + MER113 DNA MER1_type? 343 419 -102 2026 161 0 0 chr9 93893435 93893740 -23968887 - AluJb SINE Alu -7 305 1 587 257 61 85 chr9 93893740 93893841 -23968786 + MER113 DNA MER1_type? 419 509 -12 275 122 20 0 chr9 93894079 93894128 -23968499 + CT-rich Low_complexity Low_complexity 1 50 0 473 282 183 5 chr9 93894613 93894826 -23967801 - MIR SINE MIR -1 261 11 222 233 67 0 chr9 93895169 93895229 -23967398 + MIR SINE MIR 119 182 -80 352 284 105 25 chr9 93895454 93895760 -23966867 + L2 LINE L2 2706 3081 -191 363 252 63 18 chr9 93896455 93896566 -23966061 + MIR SINE MIR 32 147 -61 771 279 40 24 chr9 93897370 93897621 -23965006 - MIR SINE MIR -1 261 7 458 252 148 7 chr9 93897973 93898128 -23964499 + LTR33 LTR ERVL 5 181 -340 357 298 47 23 chr9 93898125 93898296 -23964331 + LTR33 LTR ERVL 347 521 0 * 518 302 86 25 chr9 93898515 93898760 -23963867 + MIR SINE MIR 3 262 0 312 286 131 49 chr9 93899317 93899667 -23962960 + L1MC4a LINE L1 5793 6171 -1637 26 50 0 0 chr9 93899926 93899966 -23962661 + AT_rich Low_complexity Low_complexity 1 40 0 1184 173 129 4 chr9 93899966 93900244 -23962383 - MER33 DNA MER1_type -11 313 1 1363 202 19 41 chr9 93900378 93900391 -23962236 + L1MB8 LINE L1 5815 5827 -351 2353 82 0 3 chr9 93900391 93900682 -23961945 + AluSx SINE Alu 21 310 -2 1363 202 19 41 chr9 93900682 93901030 -23961597 + L1MB8 LINE L1 5827 6168 -10 519 168 0 0 chr9 93901049 93901144 -23961483 + G-rich Low_complexity Low_complexity 2 96 0 193 149 81 95 chr9 93901326 93901400 -23961227 + MIR SINE MIR 100 172 -90 542 325 39 0 chr9 93902326 93902529 -23960098 + MIR SINE MIR 17 227 -35 376 298 40 56 chr9 93903073 93903306 -23959321 - MIR SINE MIR 0 262 36 1025 172 6 0 chr9 93903679 93903853 -23958774 + MER58A DNA MER1_type 47 221 -3 196 320 50 10 chr9 93903853 93903953 -23958674 + MIR SINE MIR 15 118 -144 684 176 13 18 chr9 93903996 93904221 -23958406 + (CACCAT)n Simple_repeat Simple_repeat 1 223 0 266 203 0 38 chr9 93904240 93904319 -23958308 + (CACCAT)n Simple_repeat Simple_repeat 4 79 0 188 33 0 33 chr9 93904884 93904914 -23957713 + (TGGGGG)n Simple_repeat Simple_repeat 5 33 0 331 161 86 54 chr9 93905056 93905149 -23957478 + MER103 DNA DNA 14 109 -57 202 188 0 0 chr9 93905150 93905182 -23957445 + polypurine Low_complexity Low_complexity 1 32 0 577 228 9 0 chr9 93905626 93905740 -23956887 + MIR SINE MIR 25 139 -123 363 244 35 61 chr9 93905872 93905987 -23956640 + MIR3 SINE MIR 14 125 -83 21 0 0 0 chr9 93907326 93907347 -23955280 + GC_rich Low_complexity Low_complexity 1 21 0 467 258 0 0 chr9 93908246 93908343 -23954284 - MIR SINE MIR -140 122 26 1898 138 0 33 chr9 93908382 93908686 -23953941 + AluJo SINE Alu 11 304 -8 546 252 33 28 chr9 93909603 93909817 -23952810 + L1MC5 LINE L1 7023 7237 -724 831 251 35 107 chr9 93909942 93910575 -23952052 + L1MC5 LINE L1 7326 7912 -49 474 271 3 13 chr9 93910773 93911088 -23951539 + (CACCC)n Simple_repeat Simple_repeat 1 311 0 251 234 181 0 chr9 93912344 93912438 -23950189 + MIR3 SINE MIR 62 172 -36 539 326 110 31 chr9 93912444 93912800 -23949827 + L2 LINE L2 2275 2658 -656 557 273 96 101 chr9 93912887 93913304 -23949323 + L2 LINE L2 2819 3233 -39 215 149 0 21 chr9 93913335 93913382 -23949245 + (GGGA)n Simple_repeat Simple_repeat 4 49 0 319 209 19 0 chr9 93913455 93913560 -23949067 + (TCCA)n Simple_repeat Simple_repeat 3 109 0 184 364 15 0 chr9 93913567 93913633 -23948994 - L2 LINE L2 -3 3310 3244 240 233 128 12 chr9 93913799 93913885 -23948742 - MIR SINE MIR -69 139 44 313 280 96 32 chr9 93913928 93914146 -23948481 + MIR SINE MIR 12 243 -19 194 288 110 0 chr9 93914469 93914542 -23948085 - MIR SINE MIR -108 154 74 433 244 142 36 chr9 93914631 93914648 -23947979 + L1ME4a LINE L1 5592 5606 -515 2086 153 0 0 chr9 93914648 93914955 -23947672 + AluJb SINE Alu 3 309 -3 433 244 142 36 chr9 93914955 93915212 -23947415 + L1ME4a LINE L1 5606 5895 -226 330 291 36 18 chr9 93915272 93915382 -23947245 + L1ME4a LINE L1 5999 6110 -11 2207 91 0 30 chr9 93915484 93915782 -23946845 + AluSc SINE Alu 14 302 -7 436 250 109 8 chr9 93916287 93916415 -23946212 + MIR SINE MIR 13 153 -109 2330 82 34 0 chr9 93916433 93916726 -23945901 - AluSg SINE Alu -7 303 1 182 335 102 20 chr9 93916786 93916983 -23945644 - L2 LINE L2 -11 3261 3049 2050 148 27 0 chr9 93917086 93917384 -23945243 + AluJb SINE Alu 1 306 -6 1982 182 17 0 chr9 93917428 93917785 -23944842 + L1MB5 LINE L1 5812 6174 0 234 291 87 8 chr9 93917882 93918009 -23944618 - L2 LINE L2 -572 2742 2606 251 208 52 13 chr9 93918024 93918101 -23944526 + CT-rich Low_complexity Low_complexity 6 85 0 205 295 76 9 chr9 93918122 93918227 -23944400 - L2 LINE L2 -24 3248 3137 * 411 295 61 26 chr9 93918222 93918416 -23944211 - MIR3 SINE MIR -3 205 2 905 153 0 0 chr9 93919067 93919198 -23943429 + AluSq/x SINE Alu 1 131 -182 2446 162 43 9 chr9 93919216 93919636 -23942991 + Tigger2a DNA MER2_type 1 434 0 1661 160 17 14 chr9 93919638 93919931 -23942696 - AluJb SINE Alu -18 294 1 365 289 94 8 chr9 93920017 93920145 -23942482 - MER5A DNA MER1_type -4 185 47 229 184 301 19 chr9 93920643 93920746 -23941881 + MIR SINE MIR 19 150 -58 263 271 84 30 chr9 93921073 93921239 -23941388 - L2 LINE L2 -224 3048 2874 223 299 23 0 chr9 93921767 93921854 -23940773 - MIR SINE MIR -127 135 47 205 284 53 11 chr9 93922346 93922441 -23940186 - MIR SINE MIR -70 138 40 310 233 12 12 chr9 93923008 93923094 -23939533 - MIR3 SINE MIR -42 166 81 187 309 52 0 chr9 93923136 93923233 -23939394 + MIR3 SINE MIR 87 188 -20 384 301 82 27 chr9 93923477 93923623 -23939004 - L2 LINE L2 0 3313 3160 211 213 240 13 chr9 93923686 93923761 -23938866 + MER5B DNA MER1_type 57 148 -30 374 272 132 22 chr9 93923782 93924054 -23938573 - L2 LINE L2 -203 3110 2809 275 249 0 73 chr9 93924072 93924197 -23938430 + MER5B DNA MER1_type 78 176 -2 586 257 56 13 chr9 93924205 93924400 -23938227 + MIR SINE MIR 20 219 -43 213 39 0 0 chr9 93924556 93924582 -23938045 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 421 294 272 28 chr9 93925096 93925821 -23936806 + L2 LINE L2 2340 3266 -6 449 286 52 7 chr9 93925850 93926004 -23936623 - MIR SINE MIR -67 195 35 182 265 20 0 chr9 93926225 93926274 -23936353 - MIR SINE MIR -96 166 117 180 0 0 0 chr9 93926276 93926296 -23936331 + (GAGAA)n Simple_repeat Simple_repeat 5 24 0 2249 93 0 28 chr9 93926347 93926668 -23935959 + AluSx SINE Alu 1 312 0 819 130 8 0 chr9 93926780 93926903 -23935724 + AluSg/x SINE Alu 178 301 -11 538 264 84 50 chr9 93927170 93927409 -23935218 + MIR SINE MIR 4 250 -12 320 297 7 61 chr9 93927808 93927956 -23934671 - MIR SINE MIR -2 260 121 2395 58 0 32 chr9 93927991 93928304 -23934323 - AluY SINE Alu -8 303 1 400 280 45 30 chr9 93928339 93928539 -23934088 + L1ME4a LINE L1 5712 5914 -207 278 340 0 10 chr9 93928547 93928647 -23933980 + GA-rich Low_complexity Low_complexity 4 102 0 2114 111 7 0 chr9 93928670 93928968 -23933659 + AluSq SINE Alu 1 300 -13 246 271 140 28 chr9 93929156 93929263 -23933364 + MIR3 SINE MIR 87 205 -3 380 193 68 0 chr9 93929457 93929545 -23933082 - MIR SINE MIR -65 143 50 216 0 0 0 chr9 93930516 93930540 -23932087 + (A)n Simple_repeat Simple_repeat 1 24 0 576 218 42 67 chr9 93930542 93930707 -23931920 + MER63A DNA MER1_type 46 206 -4 381 276 1 0 chr9 93930729 93930825 -23931802 + MIR SINE MIR 71 165 -61 371 224 17 60 chr9 93930858 93930974 -23931653 - L2 LINE L2 -10 3303 3193 184 200 0 44 chr9 93931075 93931120 -23931507 + MIR SINE MIR 104 146 -62 2208 95 0 0 chr9 93931182 93931478 -23931149 + AluSc SINE Alu 5 300 -9 185 300 0 0 chr9 93931494 93931544 -23931083 - MIR SINE MIR -109 153 104 308 300 11 0 chr9 93932131 93932221 -23930406 - L3b LINE CR1 -197 1386 1296 289 264 47 31 chr9 93932463 93932592 -23930035 + MIR3 SINE MIR 61 191 -17 26 0 0 0 chr9 93933342 93933368 -23929259 + GC_rich Low_complexity Low_complexity 1 26 0 2101 75 23 45 chr9 93933567 93933875 -23928752 + AluSx SINE Alu 12 312 0 212 245 196 0 chr9 93933954 93934056 -23928571 - MIR SINE MIR 0 262 141 180 358 25 0 chr9 93934072 93934153 -23928474 - MIR3 SINE MIR -49 159 77 188 218 18 18 chr9 93934217 93934272 -23928355 + MIR SINE MIR 47 101 -107 222 256 116 12 chr9 93934982 93935068 -23927559 + MIR SINE MIR 20 114 -148 1733 187 156 25 chr9 93935263 93935706 -23926921 - MLT1D LTR MaLR -2 503 3 342 206 0 0 chr9 93935708 93935771 -23926856 - MIR SINE MIR -63 145 83 653 274 62 46 chr9 93936264 93936543 -23926084 + LTR16A1 LTR ERVL 151 442 -15 255 282 146 0 chr9 93938305 93938408 -23924219 - MIR SINE MIR -139 123 6 232 227 30 15 chr9 93938502 93938568 -23924059 - L3 LINE CR1 -88 1489 1423 182 269 93 9 chr9 93938872 93938980 -23923647 - L2 LINE L2 -189 3083 2967 321 265 223 46 chr9 93939155 93939415 -23923212 + MER102b DNA MER1_type 33 338 -3 452 322 73 11 chr9 93939419 93939596 -23923031 + MIR SINE MIR 18 205 -57 1836 160 10 13 chr9 93939839 93940152 -23922475 - AluSx SINE Alu 0 312 1 643 157 52 22 chr9 93940154 93940288 -23922339 + MIR SINE MIR 97 234 -28 468 238 97 15 chr9 93940866 93941003 -23921624 - MIR SINE MIR -62 146 35 234 329 110 18 chr9 93942107 93942271 -23920356 + MIR SINE MIR 80 258 -4 569 200 37 37 chr9 93942339 93942474 -23920153 - MIR SINE MIR -36 226 92 2052 174 35 0 chr9 93943484 93943922 -23918705 + MLT2B1 LTR ERVL 1 511 -9 270 293 153 53 chr9 93943970 93944291 -23918336 - L2 LINE L2 -22 3250 2898 413 284 153 22 chr9 93944381 93944649 -23917978 + L2 LINE L2 2842 3144 -169 686 333 133 10 chr9 93944772 93945157 -23917470 + L2 LINE L2 2882 3313 0 317 273 279 0 chr9 93945686 93945847 -23916780 + MIR SINE MIR 30 235 -27 599 295 37 28 chr9 93946431 93946648 -23915979 - MIR SINE MIR -21 241 23 307 294 28 9 chr9 93947240 93947349 -23915278 - MIR SINE MIR -118 144 34 1278 252 82 20 chr9 93948810 93949263 -23913364 + Charlie4a DNA MER1_type 26 506 -2 251 298 214 21 chr9 93949689 93949791 -23912836 + L2 LINE L2 2603 2684 -630 1478 143 104 14 chr9 93949791 93950070 -23912557 + AluJo SINE Alu 1 304 -8 251 298 214 21 chr9 93950070 93950256 -23912371 + L2 LINE L2 2684 2947 -367 2178 147 131 8 chr9 93951131 93951512 -23911115 + MSTA LTR MaLR 1 428 0 419 311 68 6 chr9 93951587 93951764 -23910863 - MIR SINE MIR -70 192 5 241 316 90 17 chr9 93952666 93952843 -23909784 - MIR3 SINE MIR -15 193 4 951 260 241 12 chr9 93953261 93953790 -23908837 + L2 LINE L2 2657 3308 -5 777 281 50 13 chr9 93953898 93954136 -23908491 + MIR SINE MIR 16 262 0 622 252 17 113 chr9 93954157 93954502 -23908125 - L2 LINE L2 -36 3236 2925 503 232 16 8 chr9 93954525 93954650 -23907977 - MIR SINE MIR -109 153 28 247 276 26 13 chr9 93955194 93955270 -23907357 - MIR SINE MIR -68 140 64 345 292 83 21 chr9 93955560 93955704 -23906923 - MIR SINE MIR -8 254 102 1934 151 0 3 chr9 93957328 93957627 -23905000 + AluSx SINE Alu 1 298 -14 315 246 63 63 chr9 93957791 93957933 -23904694 + L2 LINE L2 3156 3297 -16 487 166 141 14 chr9 93957937 93958068 -23904559 - MIR SINE MIR -67 141 1 553 298 36 6 chr9 93958728 93958896 -23903731 - MER5B DNA MER1_type -5 173 1 267 336 53 0 chr9 93958926 93959039 -23903588 + L2 LINE L2 3134 3252 -20 443 289 4 77 chr9 93959391 93959626 -23903001 + L2 LINE L2 3077 3294 -19 459 231 131 44 chr9 93960187 93960347 -23902280 - Charlie8 DNA MER1_type -2199 218 45 411 107 0 0 chr9 93960363 93960438 -23902189 + (CA)n Simple_repeat Simple_repeat 2 76 0 183 156 0 0 chr9 93960633 93960665 -23901962 + CT-rich Low_complexity Low_complexity 1 32 0 212 250 0 50 chr9 93960694 93960754 -23901873 - MIR SINE MIR -110 152 96 183 133 44 0 chr9 93960801 93960846 -23901781 - MIR SINE MIR -75 133 87 252 261 109 11 chr9 93961304 93961396 -23901231 - MIR SINE MIR -142 120 20 1356 210 30 4 chr9 93961762 93962033 -23900594 + AluJo SINE Alu 4 281 -31 220 263 18 0 chr9 93962185 93962242 -23900385 - MIR SINE MIR -64 144 87 197 250 17 33 chr9 93962672 93962732 -23899895 - L2 LINE L2 -1 3271 3213 1996 115 7 14 chr9 93962874 93963169 -23899458 + AluSx SINE Alu 1 293 -19 487 279 46 30 chr9 93963266 93963463 -23899164 - MIR SINE MIR -55 207 8 2084 116 3 3 chr9 93963756 93964059 -23898568 - AluSx SINE Alu -9 303 1 209 374 65 22 chr9 93964147 93964286 -23898341 + MIR SINE MIR 3 150 -58 211 321 0 0 chr9 93964483 93964536 -23898091 + L2 LINE L2 3207 3259 -13 841 156 43 32 chr9 93965089 93965275 -23897352 - MER53 DNA DNA -1 188 1 341 310 28 21 chr9 93965984 93966126 -23896501 + MIR SINE MIR 48 190 -72 240 220 34 17 chr9 93966181 93966240 -23896387 - MIR SINE MIR -63 145 86 757 179 130 58 chr9 93967345 93967568 -23895059 + MIR SINE MIR 14 252 -10 221 185 56 0 chr9 93967836 93967890 -23894737 - MIR SINE MIR -108 154 98 248 276 20 31 chr9 93968823 93968921 -23893706 - MIR SINE MIR -136 126 30 431 240 10 0 chr9 93969050 93969150 -23893477 - MIR SINE MIR -116 146 46 250 150 0 0 chr9 93969174 93969214 -23893413 + MER3 DNA MER1_type 23 62 -147 359 198 97 10 chr9 93969219 93969332 -23893295 - Charlie5 DNA MER1_type -2489 123 1 524 319 77 35 chr9 93969404 93969946 -23892681 + L2 LINE L2 2481 3066 -206 215 214 0 0 chr9 93970092 93970134 -23892493 + (TGAA)n Simple_repeat Simple_repeat 2 43 0 314 207 86 93 chr9 93970383 93970523 -23892104 - MIR3 SINE MIR -47 161 23 514 368 37 31 chr9 93970573 93970894 -23891733 + L1MC4 LINE L1 4337 4659 -1487 2150 156 69 41 chr9 93970895 93971375 -23891252 + L1MC2 LINE L1 5837 6333 -11 2370 107 0 0 chr9 93971375 93971685 -23890942 + AluSx SINE Alu 1 310 -2 2150 156 69 41 chr9 93971685 93971697 -23890930 + L1MC2 LINE L1 6333 6343 -1 45 75 0 0 chr9 93971698 93971792 -23890835 + AT_rich Low_complexity Low_complexity 1 94 0 547 290 73 37 chr9 93971841 93972297 -23890330 + L1MC4 LINE L1 4724 5219 -943 1141 218 92 48 chr9 93972297 93972655 -23889972 + MLT1A2 LTR MaLR 1 374 0 547 290 73 37 chr9 93972655 93972864 -23889763 + L1MC4 LINE L1 5219 5419 -743 1179 178 0 5 chr9 93972864 93973055 -23889572 + AluJb SINE Alu 85 274 -38 535 223 61 20 chr9 93973109 93973257 -23889370 + L1MC4 LINE L1 5411 5564 -2244 2611 62 3 0 chr9 93973270 93973579 -23889048 - AluY SINE Alu -1 310 1 401 225 195 23 chr9 93973584 93974490 -23888137 + L1MC4 LINE L1 5625 6621 -1187 4076 136 26 52 chr9 93974516 93974747 -23887880 + Tigger2 DNA MER2_type 1 236 -2482 2236 109 7 0 chr9 93974747 93975041 -23887586 - AluSx SINE Alu -16 296 1 4076 136 26 52 chr9 93975041 93975074 -23887553 + Tigger2 DNA MER2_type 236 268 -2450 1995 142 3 14 chr9 93975074 93975369 -23887258 - AluSx SINE Alu -20 292 1 4076 136 26 52 chr9 93975369 93975880 -23886747 + Tigger2 DNA MER2_type 268 757 -1961 1268 149 66 4 chr9 93975935 93976177 -23886450 + Tigger2 DNA MER2_type 2452 2708 -10 1721 226 64 0 chr9 93976177 93976601 -23886026 + L1MC4 LINE L1 6679 7129 -913 2254 208 116 25 chr9 93976640 93977336 -23885291 + L1MC4 LINE L1 7226 7996 -46 2071 146 130 3 chr9 93977336 93977714 -23884913 + MSTB LTR MaLR 1 426 0 2254 208 116 25 chr9 93977714 93977766 -23884861 + L1MC4 LINE L1 7996 8042 0 183 42 0 0 chr9 93977771 93977795 -23884832 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 2018 206 38 22 chr9 93978044 93978539 -23884088 - MLT1D LTR MaLR -2 503 1 1680 174 34 39 chr9 93978606 93978963 -23883664 - THE1A LTR MaLR 0 355 1 247 205 90 0 chr9 93979189 93979267 -23883360 + L1ME LINE L1 5764 5848 -273 24 0 0 0 chr9 93979611 93979635 -23882992 + AT_rich Low_complexity Low_complexity 1 24 0 1547 109 0 15 chr9 93979853 93980078 -23882549 - AluSg/x SINE Alu 0 310 88 802 136 71 6 chr9 93980201 93980370 -23882257 - AluSx SINE Alu -124 188 9 346 290 49 19 chr9 93980910 93981072 -23881555 + L1ME4a LINE L1 5728 5894 -227 2289 151 61 9 chr9 93981129 93981554 -23881073 + L1MB7 LINE L1 5722 6168 -16 587 227 211 9 chr9 93982290 93982507 -23880120 + MIR SINE MIR 7 261 -1 409 181 245 11 chr9 93982655 93982749 -23879878 + MSTC LTR MaLR 1 116 -312 336 143 0 0 chr9 93982759 93982829 -23879798 + (TC)n Simple_repeat Simple_repeat 1 70 0 341 217 33 0 chr9 93982830 93982922 -23879705 + MSTC LTR MaLR 300 394 -2 322 258 0 0 chr9 93982924 93982990 -23879637 + MER5A DNA MER1_type 31 96 -93 250 136 0 23 chr9 93982990 93983034 -23879593 + MLT1G LTR MaLR 1 43 -552 1009 230 115 53 chr9 93983077 93983512 -23879115 + MLT1C LTR MaLR 6 467 0 823 285 137 17 chr9 93983512 93983978 -23878649 + MLT1G LTR MaLR 51 573 -17 393 226 15 83 chr9 93984854 93984987 -23877640 - MIR SINE MIR 0 262 139 213 158 35 22 chr9 93985497 93985561 -23877066 + MIR SINE MIR 57 123 -85 284 244 103 0 chr9 93985678 93985756 -23876871 - MIR SINE MIR -78 184 99 432 312 56 40 chr9 93986283 93986533 -23876094 + MIR SINE MIR 8 261 -1 889 246 13 22 chr9 93986922 93987146 -23875481 + MIR SINE MIR 38 259 -3 23 0 0 0 chr9 93987247 93987270 -23875357 + AT_rich Low_complexity Low_complexity 1 23 0 209 190 35 35 chr9 93987938 93987996 -23874631 - MIR SINE MIR -55 153 96 2460 140 47 2 chr9 93988170 93988571 -23874056 - MSTB LTR MaLR -7 419 1 4486 222 156 18 chr9 93988715 93990338 -23872289 + L1M4 LINE L1 3337 5183 -963 914 179 25 6 chr9 93990338 93990500 -23872127 - AluJb SINE Alu -9 303 139 235 211 90 64 chr9 93990508 93990562 -23872065 + L1M4 LINE L1 5175 5226 -920 1951 148 34 10 chr9 93990562 93990860 -23871767 + AluJo SINE Alu 1 305 -7 235 211 90 64 chr9 93990860 93990896 -23871731 + L1M4 LINE L1 5226 5260 -886 2161 125 83 0 chr9 93990896 93991233 -23871394 - MER47A DNA MER2_type -1 365 1 235 211 90 64 chr9 93991233 93991297 -23871330 + L1M4 LINE L1 5260 5334 -812 2008 222 82 125 chr9 93991302 93991669 -23870958 + L1MC4a LINE L1 6061 6442 -1366 2046 135 10 7 chr9 93991669 93991966 -23870661 + AluSx SINE Alu 1 298 -14 2008 222 82 125 chr9 93991966 93992757 -23869870 + L1MC4a LINE L1 6442 7149 -659 2298 97 3 0 chr9 93992757 93993055 -23869572 + AluSx SINE Alu 1 299 -13 2008 222 82 125 chr9 93993055 93993184 -23869443 + L1MC4a LINE L1 7149 7282 -526 668 304 65 0 chr9 93993963 93994177 -23868450 - MIR SINE MIR -6 256 29 188 272 86 25 chr9 93994185 93994266 -23868361 - L2 LINE L2 -60 3253 3168 2153 116 3 20 chr9 93994299 93994593 -23868034 + AluSx SINE Alu 1 289 -23 576 39 51 0 chr9 93994981 93995059 -23867568 + MSTB LTR MaLR 1 82 -344 536 286 45 22 chr9 93995384 93995562 -23867065 + MIR SINE MIR 69 250 -12 432 324 66 21 chr9 93996388 93996629 -23865998 - L1ME4a LINE L1 -72 6049 5798 753 283 76 81 chr9 93996690 93997097 -23865530 + L2 LINE L2 2851 3255 -17 354 240 178 14 chr9 93997493 93997639 -23864988 - MIR3 SINE MIR -15 193 24 310 308 39 0 chr9 93997657 93997761 -23864866 + MIR SINE MIR 39 146 -62 588 315 60 9 chr9 93997773 93998005 -23864622 + MIR SINE MIR 5 248 -14 1228 147 87 28 chr9 93998581 93998833 -23863794 + L1MD3 LINE L1 7729 7995 0 485 284 47 75 chr9 93998990 93999111 -23863516 + MIR SINE MIR 15 138 -124 968 98 0 0 chr9 93999111 93999244 -23863383 + L1MA2 LINE L1 6172 6304 0 485 284 47 75 chr9 93999244 93999376 -23863251 + MIR SINE MIR 138 261 -1 2329 116 9 3 chr9 93999403 93999749 -23862878 - MLT1A1 LTR MaLR 0 365 18 465 19 0 0 chr9 93999935 93999989 -23862638 + (ATG)n Simple_repeat Simple_repeat 1 54 0 950 140 18 10 chr9 93999994 94000162 -23862465 - MLT1A1 LTR MaLR 0 365 224 283 275 9 73 chr9 94000162 94000271 -23862356 - MIR SINE MIR -90 118 17 717 257 56 23 chr9 94000778 94000992 -23861635 + MIR SINE MIR 28 248 -14 266 270 48 48 chr9 94001671 94001797 -23860830 + MIR3 SINE MIR 53 178 -30 378 285 57 76 chr9 94002403 94002666 -23859961 - L2 LINE L2 -57 3215 2958 190 220 20 0 chr9 94003111 94003161 -23859466 - MIR SINE MIR -44 218 168 745 201 43 41 chr9 94003177 94003401 -23859226 + MIR SINE MIR 41 262 0 740 263 108 17 chr9 94004054 94004286 -23858341 + MIR SINE MIR 10 262 0 457 280 60 15 chr9 94004595 94004795 -23857832 + LTR16A LTR ERVL 106 314 -136 1545 216 106 24 chr9 94004844 94005270 -23857357 - MLT1D LTR MaLR -17 488 28 605 254 140 26 chr9 94006359 94006587 -23856040 - MIR SINE MIR -7 255 2 302 323 10 10 chr9 94006596 94006695 -23855932 + MIR SINE MIR 46 144 -64 474 261 33 62 chr9 94006879 94007090 -23855537 + MLT1L LTR MaLR 214 418 -197 551 276 95 70 chr9 94007272 94007862 -23854765 + L2 LINE L2 2633 3298 -15 584 292 33 41 chr9 94007893 94008136 -23854491 - MIR SINE MIR -2 260 20 360 297 14 58 chr9 94008570 94008708 -23853919 + MIR SINE MIR 60 191 -71 275 299 161 17 chr9 94009657 94009831 -23852796 + L2 LINE L2 2914 3112 -160 1315 150 9 0 chr9 94010074 94010300 -23852327 + L1M3 LINE L1 5442 5669 -502 180 226 113 16 chr9 94010300 94010362 -23852265 - MIR SINE MIR -193 69 2 1870 174 0 10 chr9 94011092 94011390 -23851237 - AluJo SINE Alu -17 295 1 651 294 54 72 chr9 94011461 94011852 -23850775 + L2 LINE L2 2899 3282 -31 345 240 120 16 chr9 94011885 94012010 -23850617 + MIR SINE MIR 113 250 -12 1078 154 0 0 chr9 94013263 94013425 -23849202 + AluSg/x SINE Alu 134 295 -15 2532 197 34 4 chr9 94014135 94014664 -23847963 + MER68 LTR ERV1 10 554 -8 296 262 116 70 chr9 94014718 94014890 -23847737 - MIR SINE MIR -10 252 73 2304 111 0 13 chr9 94014903 94015219 -23847408 + AluSx SINE Alu 1 312 0 1378 235 43 9 chr9 94015449 94015794 -23846833 + MLT1A2 LTR MaLR 1 357 -17 747 282 52 11 chr9 94015801 94016148 -23846479 + L1ME4a LINE L1 5761 6121 0 240 238 159 0 chr9 94016840 94016903 -23845724 - L2 LINE L2 -3 3269 3197 332 317 92 6 chr9 94017560 94017724 -23844903 + MIR SINE MIR 73 250 -12 192 273 0 0 chr9 94018017 94018072 -23844555 - MIR3 SINE MIR -53 155 101 397 284 72 31 chr9 94018757 94018951 -23843676 + MIR3 SINE MIR 7 208 0 341 247 0 0 chr9 94019498 94019571 -23843056 + MIR SINE MIR 75 147 -115 362 265 85 58 chr9 94020447 94020531 -23842096 + MIR SINE MIR 63 143 -119 2186 109 0 3 chr9 94020531 94020825 -23841802 + AluSx SINE Alu 1 293 -19 362 265 85 58 chr9 94020825 94020847 -23841780 + MIR SINE MIR 143 163 -99 1491 190 19 48 chr9 94020847 94021157 -23841470 + AluJo SINE Alu 3 303 -9 362 265 85 58 chr9 94021157 94021238 -23841389 + MIR SINE MIR 163 256 -6 549 220 32 86 chr9 94021820 94022006 -23840621 + MIR SINE MIR 14 189 -73 471 27 13 27 chr9 94022008 94022083 -23840544 + (TG)n Simple_repeat Simple_repeat 2 75 0 * 491 0 17 0 chr9 94022082 94022141 -23840486 + (TA)n Simple_repeat Simple_repeat 1 60 0 25 0 0 0 chr9 94022302 94022327 -23840300 + AT_rich Low_complexity Low_complexity 1 25 0 395 291 58 53 chr9 94022386 94022820 -23839807 - L1MC4a LINE L1 -97 6024 5597 548 298 24 54 chr9 94023238 94023443 -23839184 + MIR SINE MIR 64 262 0 203 270 84 13 chr9 94023477 94023600 -23839027 - MIR SINE MIR -60 148 20 251 292 207 20 chr9 94023904 94024235 -23838392 + L2 LINE L2 2563 2963 -309 576 106 0 0 chr9 94024575 94024660 -23837967 + (CA)n Simple_repeat Simple_repeat 1 85 0 180 191 24 48 chr9 94024822 94024864 -23837763 + L2 LINE L2 3272 3312 -1 893 293 83 40 chr9 94027148 94027705 -23834922 + L1ME4a LINE L1 5384 5964 -157 1633 152 0 94 chr9 94027826 94028155 -23834472 + AluJb SINE Alu 1 298 -4 1917 138 0 23 chr9 94028190 94028494 -23834133 + AluJo SINE Alu 1 297 -15 194 196 43 0 chr9 94029005 94029051 -23833576 - L2 LINE L2 -12 3260 3213 309 250 14 14 chr9 94029098 94029170 -23833457 + MIR SINE MIR 22 93 -169 338 131 49 16 chr9 94029497 94029558 -23833069 - MIR SINE MIR -106 156 94 494 231 63 28 chr9 94029566 94029709 -23832918 - MIR SINE MIR -105 157 10 580 217 118 59 chr9 94029765 94029968 -23832659 + MIR SINE MIR 47 261 -1 249 229 124 9 chr9 94031845 94031950 -23830677 - MIR SINE MIR -133 129 13 195 308 0 0 chr9 94032116 94032168 -23830459 - MER5A DNA MER1_type 0 189 138 210 143 0 0 chr9 94032639 94032674 -23829953 + (A)n Simple_repeat Simple_repeat 1 35 0 387 291 3 26 chr9 94032947 94033120 -23829507 - MIR SINE MIR -45 217 52 487 276 98 55 chr9 94033245 94033499 -23829128 - L2 LINE L2 -1 3312 3048 816 127 242 0 chr9 94034097 94034262 -23828365 + L1MC1 LINE L1 6129 6333 0 418 247 144 14 chr9 94036150 94036296 -23826331 - MIR3 SINE MIR -9 199 35 180 0 0 0 chr9 94036649 94036669 -23825958 + (TTTAA)n Simple_repeat Simple_repeat 3 22 0 324 0 0 0 chr9 94036674 94036710 -23825917 + (CA)n Simple_repeat Simple_repeat 2 37 0 479 203 102 8 chr9 94036789 94036907 -23825720 + L1MD3 LINE L1 7710 7838 -157 312 299 43 12 chr9 94038731 94038847 -23823780 - MIR3 SINE MIR -32 176 60 248 287 64 43 chr9 94039040 94039134 -23823493 + L2 LINE L2 3162 3257 -56 214 281 44 54 chr9 94039161 94039298 -23823329 - MIR SINE MIR -69 139 14 36 0 0 0 chr9 94039830 94039866 -23822761 + GC_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr9 94040627 94040649 -23821978 + GC_rich Low_complexity Low_complexity 1 22 0 999 137 158 0 chr9 94041236 94041426 -23821201 + L1MD2 LINE L1 6138 6357 -2 267 31 0 0 chr9 94041600 94041632 -23820995 + (CA)n Simple_repeat Simple_repeat 2 33 0 411 21 0 0 chr9 94041811 94041859 -23820768 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 255 313 60 0 chr9 94041867 94041950 -23820677 - L2 LINE L2 -5 3308 3221 1405 178 63 3 chr9 94043226 94043513 -23819114 - AluJb SINE Alu -8 304 1 275 270 170 30 chr9 94043553 94043685 -23818942 + MIR SINE MIR 22 146 -62 696 281 126 4 chr9 94043942 94044032 -23818595 - MIR SINE MIR 0 262 184 201 74 0 0 chr9 94044032 94044059 -23818568 + (CAT)n Simple_repeat Simple_repeat 1 27 0 696 281 126 4 chr9 94044059 94044199 -23818428 - MIR SINE MIR -78 184 4 490 307 53 23 chr9 94044865 94045075 -23817552 + MIR SINE MIR 23 242 -20 236 370 0 0 chr9 94045145 94045218 -23817409 + L2 LINE L2 3193 3265 -7 417 274 48 16 chr9 94045373 94045497 -23817130 - MIR SINE MIR -48 214 87 290 213 139 37 chr9 94045850 94045958 -23816669 - L2 LINE L2 -1 3271 3153 315 291 86 26 chr9 94046154 94046224 -23816403 + MIR SINE MIR 86 150 -112 1980 108 3 20 chr9 94046224 94046521 -23816106 + AluSx SINE Alu 1 292 -20 315 291 86 26 chr9 94046521 94046601 -23816026 + MIR SINE MIR 150 245 -17 259 281 58 50 chr9 94046861 94046982 -23815645 + MIR3 SINE MIR 82 203 -5 322 158 0 35 chr9 94047479 94047536 -23815091 - L2 LINE L2 -5 3267 3213 1245 292 76 9 chr9 94047628 94048060 -23814567 - MLT1E LTR MaLR 0 593 133 283 91 68 0 chr9 94048168 94048212 -23814415 - L2 LINE L2 -5 3308 3262 467 236 65 8 chr9 94048272 94048395 -23814232 - MLT1E LTR MaLR -432 161 32 464 329 59 41 chr9 94048420 94048778 -23813849 - L2 LINE L2 -160 3112 2739 420 259 188 18 chr9 94049058 94049228 -23813399 + MIR SINE MIR 36 234 -28 2250 115 51 51 chr9 94049231 94049252 -23813375 - MLT1B LTR MaLR 0 390 370 2594 125 42 33 chr9 94049252 94049481 -23813146 - MSTA LTR MaLR 0 428 192 2089 107 3 10 chr9 94049481 94049781 -23812846 - AluSx SINE Alu -14 298 1 2594 125 42 33 chr9 94049781 94049975 -23812652 - MSTA LTR MaLR -236 192 1 2250 115 51 51 chr9 94049975 94050343 -23812284 - MLT1B LTR MaLR -19 371 1 350 219 180 31 chr9 94051288 94051416 -23811211 - MIR SINE MIR -13 249 103 252 262 101 40 chr9 94051530 94051679 -23810948 - L2 LINE L2 -168 3104 2947 240 35 0 0 chr9 94051749 94051778 -23810849 + (T)n Simple_repeat Simple_repeat 1 29 0 1010 292 7 3 chr9 94051794 94052102 -23810525 + L1ME LINE L1 5372 5680 -490 304 259 142 48 chr9 94052104 94052315 -23810312 - MLT1H LTR MaLR 0 549 293 2940 151 39 86 chr9 94052473 94052772 -23809855 - L1MB8 LINE L1 -2 6176 5864 1613 155 57 7 chr9 94052772 94053069 -23809558 - AluSx SINE Alu 0 312 1 1751 178 0 25 chr9 94053069 94053389 -23809238 - AluJo SINE Alu 0 312 1 2940 151 39 86 chr9 94053389 94053738 -23808889 - L1MB8 LINE L1 -312 5866 5558 244 318 78 39 chr9 94054109 94054238 -23808389 - MIR3 SINE MIR -33 175 42 3085 224 83 36 chr9 94054431 94055206 -23807421 + MER21B LTR ERV1 1 811 -52 243 328 0 0 chr9 94055234 94055298 -23807329 - L2 LINE L2 -4 3309 3246 507 279 99 59 chr9 94055300 94055572 -23807055 - L1ME4a LINE L1 -148 5973 5691 1688 155 31 138 chr9 94055811 94056133 -23806494 - MLT1C LTR MaLR 0 467 221 2082 125 0 3 chr9 94056133 94056446 -23806181 + AluSx SINE Alu 1 312 0 1688 155 31 138 chr9 94056446 94056646 -23805981 - MLT1C LTR MaLR -246 221 1 646 122 10 20 chr9 94056678 94056776 -23805851 + FLAM_A SINE Alu 27 123 -19 675 277 22 11 chr9 94057078 94057262 -23805365 - MLT1I LTR MaLR 0 409 224 764 200 107 68 chr9 94057266 94057546 -23805081 - LTR50 LTR ERVL -19 776 486 398 241 280 19 chr9 94057581 94057788 -23804839 - LTR50 LTR ERVL -496 299 39 543 211 232 0 chr9 94058117 94058259 -23804368 + MER5A DNA MER1_type 9 183 -6 219 36 0 0 chr9 94058320 94058348 -23804279 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1746 209 56 31 chr9 94058643 94059092 -23803535 - MLT1C LTR MaLR 0 467 8 268 290 129 11 chr9 94059606 94059699 -23802928 + L2 LINE L2 3146 3249 -23 307 298 16 32 chr9 94059702 94059826 -23802801 - LTR16C LTR ERVL -7 484 363 388 179 232 80 chr9 94059835 94059986 -23802641 - MER96 DNA MER1_type? 0 175 2 281 278 38 83 chr9 94059991 94060124 -23802503 - LTR16A1 LTR ERVL -134 323 197 299 234 0 13 chr9 94060314 94060391 -23802236 + (TGAA)n Simple_repeat Simple_repeat 1 76 0 732 152 0 0 chr9 94061101 94061206 -23801421 + FLAM_C SINE Alu 14 118 -25 183 329 100 0 chr9 94061249 94061319 -23801308 - L2 LINE L2 0 3313 3237 494 249 6 0 chr9 94061413 94061586 -23801041 + (TGGA)n Simple_repeat Simple_repeat 1 174 0 687 282 59 109 chr9 94061622 94062200 -23800427 + MLT1K LTR MaLR 30 578 -10 186 191 0 0 chr9 94062217 94062259 -23800368 + (TGAA)n Simple_repeat Simple_repeat 2 43 0 273 346 38 15 chr9 94062722 94062855 -23799772 - L2 LINE L2 -210 3062 2927 1221 159 0 95 chr9 94062938 94063091 -23799536 + AluJo SINE Alu 1 120 -192 1819 161 13 0 chr9 94063091 94063389 -23799238 + AluSq SINE Alu 1 302 -11 1221 159 0 95 chr9 94063389 94063499 -23799128 + AluJo SINE Alu 120 239 -73 244 276 18 44 chr9 94063661 94063791 -23798836 + MER5B DNA MER1_type 42 179 -10 376 313 25 95 chr9 94063814 94064130 -23798497 - MLT1J LTR MaLR -61 450 157 237 264 52 130 chr9 94064250 94064481 -23798146 - L2 LINE L2 -629 2685 2473 2316 82 3 3 chr9 94064711 94065016 -23797611 + AluSp SINE Alu 1 305 -8 478 281 233 0 chr9 94065271 94065481 -23797146 - MIR SINE MIR 0 262 4 1704 154 20 17 chr9 94065608 94065907 -23796720 + AluJb SINE Alu 1 300 -12 609 233 0 0 chr9 94066206 94066322 -23796305 + FLAM_C SINE Alu 23 138 -5 1838 153 0 3 chr9 94066323 94066617 -23796010 + AluJo SINE Alu 2 294 -18 803 232 0 18 chr9 94067598 94067766 -23794861 - MIR SINE MIR 0 262 98 2137 218 68 67 chr9 94067766 94068472 -23794155 + L1M4 LINE L1 39 745 -5651 2166 157 19 16 chr9 94068575 94068939 -23793688 - MLT1A1 LTR MaLR 0 365 1 21 0 0 0 chr9 94068961 94068982 -23793645 + AT_rich Low_complexity Low_complexity 1 21 0 1379 218 76 41 chr9 94068983 94069399 -23793228 + L1M4 LINE L1 746 1183 -5213 2058 110 0 3 chr9 94069399 94069700 -23792927 + AluSg SINE Alu 1 300 -10 1379 218 76 41 chr9 94069700 94069769 -23792858 + L1M4 LINE L1 1183 1248 -5148 359 162 31 39 chr9 94069752 94069880 -23792747 + L1M4 LINE L1 2991 5542 -711 * 836 212 3 86 chr9 94069878 94070170 -23792457 + L1ME LINE L1 3673 3940 -2206 800 133 0 22 chr9 94070177 94070312 -23792315 - FLAM_C SINE Alu -1 142 11 210 37 0 0 chr9 94070348 94070375 -23792252 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2217 112 49 25 chr9 94070410 94070776 -23791851 - THE1C LTR MaLR 0 375 1 615 239 102 18 chr9 94071209 94071376 -23791251 + FRAM SINE Alu 1 174 -2 431 60 12 48 chr9 94071376 94071459 -23791168 + (GGAA)n Simple_repeat Simple_repeat 1 80 0 962 181 88 74 chr9 94071459 94071779 -23790848 + L1ME LINE L1 4044 4364 -1782 791 210 0 0 chr9 94071789 94071932 -23790695 - FLAM_C SINE Alu 0 143 1 2356 217 53 14 chr9 94071963 94072607 -23790020 + L1ME LINE L1 4399 5067 -1079 1515 180 80 35 chr9 94072619 94073015 -23789612 + MLT1C LTR MaLR 6 390 0 1023 218 58 20 chr9 94073018 94073415 -23789212 + L1ME LINE L1 5069 5477 -689 1357 182 29 63 chr9 94073422 94073789 -23788838 + MLT1A1 LTR MaLR 1 427 -1 836 189 6 13 chr9 94073800 94073959 -23788668 + MLT1A1 LTR MaLR 1 158 -207 2092 111 0 0 chr9 94073960 94074249 -23788378 + AluSx SINE Alu 2 290 -22 1197 164 44 32 chr9 94074251 94074501 -23788126 + AluJo SINE Alu 57 309 -3 415 292 44 15 chr9 94074582 94074719 -23787908 - MIR SINE MIR -102 160 20 317 339 22 97 chr9 94075319 94075464 -23787163 + L3 LINE CR1 1361 1485 -92 2333 61 27 0 chr9 94075464 94075761 -23786866 + AluSx SINE Alu 1 305 -7 317 339 22 97 chr9 94075761 94075842 -23786785 + L3 LINE CR1 1485 1570 -7 1807 137 0 4 chr9 94075869 94076140 -23786487 - AluSx SINE Alu -9 303 34 2194 153 16 16 chr9 94076151 94076517 -23786110 + MSTB LTR MaLR 1 366 -60 635 51 25 0 chr9 94076518 94076597 -23786030 + AluSg/x SINE Alu 213 293 -17 511 110 0 0 chr9 94076597 94076670 -23785957 + MSTB LTR MaLR 356 428 0 892 162 0 71 chr9 94077025 94077222 -23785405 + AluSg/x SINE Alu 117 299 -11 300 152 0 0 chr9 94077466 94077512 -23785115 - MER33 DNA MER1_type 0 363 318 1693 159 3 49 chr9 94077512 94077901 -23784726 - AluJo SINE Alu 0 374 1 1521 165 21 0 chr9 94077901 94078191 -23784436 - MER33 DNA MER1_type -39 285 1 1981 106 4 0 chr9 94078226 94078501 -23784126 + AluSx SINE Alu 24 299 -13 209 33 33 0 chr9 94078967 94078997 -23783630 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1645 166 7 7 chr9 94078999 94079283 -23783344 - AluJo SINE Alu -28 284 1 313 167 269 9 chr9 94080170 94080278 -23782349 + MIR SINE MIR 113 248 -14 183 152 0 30 chr9 94080251 94080284 -23782343 + L2 LINE L2 3267 3298 -15 * 268 336 9 9 chr9 94080608 94080724 -23781903 - L1ME LINE L1 -432 5689 5574 346 272 156 42 chr9 94080742 94080992 -23781635 - L1ME LINE L1 -911 5448 5257 1935 103 33 0 chr9 94081002 94081305 -23781322 - AluSx SINE Alu 0 312 1 195 42 0 0 chr9 94081345 94081369 -23781258 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 420 280 40 16 chr9 94081441 94081566 -23781061 - L2 LINE L2 0 3272 3145 203 393 11 22 chr9 94081827 94082005 -23780622 - L2 LINE L2 -434 2880 2705 432 230 52 3 chr9 94083291 94083414 -23779213 - MLT1F LTR MaLR -127 468 279 469 274 83 30 chr9 94083421 94083589 -23779038 + MLT1G1 LTR MaLR 152 328 -267 1426 165 19 19 chr9 94083721 94083988 -23778639 + AluJo SINE Alu 2 268 -44 254 32 0 0 chr9 94083989 94084020 -23778607 + (GA)n Simple_repeat Simple_repeat 2 32 0 371 113 16 0 chr9 94084020 94084082 -23778545 + (GGAA)n Simple_repeat Simple_repeat 2 64 0 188 119 0 24 chr9 94084131 94084173 -23778454 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 835 224 0 0 chr9 94084219 94084375 -23778252 + MER58B DNA MER1_type 183 338 -3 197 343 28 28 chr9 94084390 94084498 -23778129 - MIR SINE MIR -80 128 21 719 288 206 6 chr9 94084723 94085063 -23777564 + MLT1K LTR MaLR 20 427 -161 234 62 0 0 chr9 94085601 94085633 -23776994 + (TTTTC)n Simple_repeat Simple_repeat 2 33 0 479 195 0 11 chr9 94085756 94085843 -23776784 - FAM SINE Alu -2 183 98 270 286 12 24 chr9 94085848 94085932 -23776695 - MER5A DNA MER1_type -22 167 85 249 264 100 55 chr9 94085852 94085962 -23776665 + MER5B DNA MER1_type 27 141 -37 * 825 91 0 66 chr9 94085962 94086083 -23776544 - FLAM_C SINE Alu -17 126 14 314 282 46 61 chr9 94086269 94086400 -23776227 - MIR3 SINE MIR -3 205 77 185 0 40 0 chr9 94086479 94086504 -23776123 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 25 31 0 0 chr9 94086507 94086539 -23776088 + AT_rich Low_complexity Low_complexity 1 32 0 1520 142 9 85 chr9 94086539 94086857 -23775770 - AluJo SINE Alu -18 294 1 182 161 0 0 chr9 94087810 94087841 -23774786 - L2 LINE L2 -1 3271 3241 283 271 144 0 chr9 94088052 94088170 -23774457 + MLT1L LTR MaLR 111 245 -370 873 122 0 0 chr9 94088240 94088363 -23774264 + AluSq/x SINE Alu 11 133 -179 456 261 112 37 chr9 94088456 94088671 -23773956 + MLT1L LTR MaLR 372 602 -13 2024 226 72 60 chr9 94089397 94090033 -23772594 - MER21B LTR ERV1 -124 739 96 297 240 30 70 chr9 94090086 94090167 -23772460 - MER21B LTR ERV1 -767 96 18 306 0 0 0 chr9 94090167 94090201 -23772426 + (TA)n Simple_repeat Simple_repeat 1 34 0 297 240 30 70 chr9 94090201 94090219 -23772408 - MER21B LTR ERV1 -845 18 1 231 271 0 0 chr9 94090306 94090354 -23772273 + MER94 DNA DNA 87 134 0 298 316 105 30 chr9 94090800 94090933 -23771694 - MER91A DNA MER1_type -26 170 28 1656 162 14 0 chr9 94091150 94091483 -23771144 + AluSx SINE Alu 1 337 0 2345 138 2 44 chr9 94091621 94092034 -23770593 + MSTD LTR MaLR 1 396 0 3981 121 30 30 chr9 94092130 94092435 -23770192 - MER41B LTR ERV1 0 635 331 2321 78 0 0 chr9 94092435 94092729 -23769898 - AluY SINE Alu -17 294 1 3981 121 30 30 chr9 94092729 94093058 -23769569 - MER41B LTR ERV1 -303 332 1 2405 199 63 38 chr9 94093219 94093833 -23768794 + MER92B LTR ERV1 7 636 0 2229 91 0 3 chr9 94094199 94094495 -23768132 - AluSg SINE Alu -14 296 2 218 333 12 12 chr9 94094540 94094624 -23768003 - MIR3 SINE MIR 0 208 125 224 292 50 50 chr9 94094635 94094755 -23767872 + L2 LINE L2 3153 3272 0 1709 151 3 40 chr9 94094810 94095114 -23767513 - AluJo SINE Alu -16 296 4 314 257 225 32 chr9 94095525 94095712 -23766915 - MIR SINE MIR -11 251 29 2255 88 0 0 chr9 94095798 94096093 -23766534 + AluSg SINE Alu 1 295 -15 1175 275 87 35 chr9 94096372 94096471 -23766156 - LTR16C LTR ERVL -4 487 395 2072 91 0 24 chr9 94096471 94096769 -23765858 + AluSx SINE Alu 2 292 -20 1175 275 87 35 chr9 94096769 94097131 -23765496 - LTR16C LTR ERVL -96 395 2 540 129 138 26 chr9 94097257 94097373 -23765254 - MER65A LTR ERV1 -1 444 316 2095 87 0 17 chr9 94097376 94097687 -23764940 - AluSq SINE Alu 0 306 1 648 188 106 24 chr9 94097687 94097857 -23764770 - MER65A LTR ERV1 -257 188 5 6617 231 87 36 chr9 94097862 94100411 -23762216 - MER65A-int LTR ERV1 -1 4870 2675 496 149 0 0 chr9 94100420 94100494 -23762133 - U13 snRNA snRNA -30 74 1 622 244 8 0 chr9 94100518 94100645 -23761982 + FLAM_A SINE Alu 1 128 -5 861 147 55 92 chr9 94100649 94100735 -23761892 - MER21B-int LTR ERV1 -2586 4012 3924 2142 92 0 0 chr9 94100735 94101044 -23761583 + AluSc SINE Alu 1 309 0 861 147 55 92 chr9 94101044 94101250 -23761377 - MER21B-int LTR ERV1 -2674 3924 3731 801 163 10 51 chr9 94101338 94101534 -23761093 - MER21B-int LTR ERV1 -2869 3729 3542 2179 111 0 0 chr9 94101560 94101857 -23760770 + AluSg SINE Alu 1 297 -13 1459 128 26 0 chr9 94102104 94102338 -23760289 - AluSx SINE Alu -72 240 1 1058 210 44 135 chr9 94102338 94102387 -23760240 - MER21B-int LTR ERV1 -281 1505 1453 2137 112 0 3 chr9 94102387 94102681 -23759946 + AluSg SINE Alu 3 295 -15 1058 210 44 135 chr9 94102681 94103238 -23759389 - MER21B-int LTR ERV1 -333 1453 1067 2427 40 10 0 chr9 94103238 94103535 -23759092 + AluY SINE Alu 1 300 -11 1058 210 44 135 chr9 94103535 94103926 -23758701 - MER21B-int LTR ERV1 -719 1067 642 465 230 0 48 chr9 94103932 94104058 -23758569 + MER54B LTR ERVL 95 214 -579 1228 218 97 75 chr9 94104125 94104149 -23758478 - MER21B-int LTR ERV1 -4231 640 618 2066 114 10 0 chr9 94104149 94104448 -23758179 - AluSq SINE Alu -11 302 1 1228 218 97 75 chr9 94104448 94104839 -23757788 - MER21B-int LTR ERV1 -4253 618 210 2027 130 3 0 chr9 94104839 94105139 -23757488 + AluSq SINE Alu 1 301 -12 1228 218 97 75 chr9 94105139 94105226 -23757401 - MER21B-int LTR ERV1 -4661 210 126 1084 201 74 4 chr9 94105227 94105456 -23757171 + AluJb SINE Alu 1 245 -67 796 83 0 9 chr9 94105496 94105604 -23757023 + MER30 DNA MER1_type 1 107 -123 497 140 40 40 chr9 94105729 94105829 -23756798 - MER65B LTR ERV1 -431 100 1 2020 123 7 0 chr9 94105830 94106123 -23756504 - AluSx SINE Alu -17 295 1 751 242 66 48 chr9 94106181 94106408 -23756219 - MER21B LTR ERV1 -60 803 573 2160 93 13 13 chr9 94106459 94106769 -23755858 - AluSg SINE Alu 0 310 1 2191 96 17 0 chr9 94107340 94107641 -23754986 + AluSx SINE Alu 1 306 -6 2077 120 7 0 chr9 94108035 94108336 -23754291 + AluSg SINE Alu 1 303 -7 1232 226 52 18 chr9 94108336 94108667 -23753960 - MER92C LTR ERV1 -12 542 128 2031 109 0 26 chr9 94108694 94109006 -23753621 + AluSq SINE Alu 1 304 -9 900 155 107 5 chr9 94109008 94109195 -23753432 + AluJo SINE Alu 104 309 -3 180 0 0 0 chr9 94109212 94109232 -23753395 + (TTAA)n Simple_repeat Simple_repeat 2 21 0 506 114 8 197 chr9 94109244 94109376 -23753251 - MER92B LTR ERV1 -529 107 1 552 247 90 58 chr9 94109453 94109526 -23753101 + L2 LINE L2 2683 2752 -520 209 32 0 32 chr9 94109526 94109557 -23753070 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 1675 149 14 0 chr9 94109557 94109833 -23752794 - AluSx SINE Alu -32 280 1 552 247 90 58 chr9 94109833 94110067 -23752560 + L2 LINE L2 2751 3002 -270 690 176 6 82 chr9 94110123 94110208 -23752419 - MER72 LTR ERV1 0 722 653 1866 67 0 31 chr9 94110208 94110462 -23752165 - AluSq SINE Alu -12 301 56 690 176 6 82 chr9 94110462 94110535 -23752092 - MER72 LTR ERV1 -69 653 576 1025 157 6 6 chr9 94110643 94110815 -23751812 + AluSc SINE Alu 123 294 -15 1949 174 17 20 chr9 94110816 94111161 -23751466 - MER72 LTR ERV1 -140 582 239 848 125 0 0 chr9 94111258 94111378 -23751249 - FLAM_C SINE Alu -18 125 6 919 221 26 15 chr9 94111398 94111593 -23751034 - MER72 LTR ERV1 -525 197 1 269 228 11 11 chr9 94111654 94111746 -23750881 - Charlie5 DNA MER1_type 0 2614 2523 1546 159 12 47 chr9 94111767 94112087 -23750540 - L1MB2 LINE L1 -2 6169 5861 206 227 67 0 chr9 94112089 94112208 -23750419 + (TA)n Simple_repeat Simple_repeat 1 127 0 2138 111 0 7 chr9 94112227 94112524 -23750103 - AluSx SINE Alu -17 295 1 376 80 0 0 chr9 94112577 94112627 -23750000 - LTR54 LTR ERV1 -75 435 386 588 80 0 0 chr9 94112627 94112702 -23749925 - Alu SINE Alu -235 76 2 372 187 40 13 chr9 94112703 94112778 -23749849 - LTR54 LTR ERV1 -184 326 250 22 35 0 0 chr9 94112797 94112826 -23749801 + AT_rich Low_complexity Low_complexity 1 29 0 326 136 0 17 chr9 94112835 94112894 -23749733 - FAM SINE Alu -2 177 120 188 261 0 22 chr9 94112908 94112954 -23749673 - L3 LINE CR1 -1060 517 473 1932 55 0 0 chr9 94112968 94113205 -23749422 - AluY SINE Alu -17 294 58 25 0 0 0 chr9 94113205 94113230 -23749397 + AT_rich Low_complexity Low_complexity 1 25 0 1818 154 3 0 chr9 94113230 94113516 -23749111 - AluSx SINE Alu -25 287 1 237 188 62 143 chr9 94113520 94113632 -23748995 + LTR56 LTR ERV1 119 221 -224 1215 180 47 19 chr9 94113692 94113971 -23748656 + LTR54 LTR ERV1 1 309 -189 1451 176 4 0 chr9 94113971 94114215 -23748412 + AluJb SINE Alu 1 245 -67 3402 154 38 11 chr9 94114216 94114774 -23747853 + MER50 LTR ERV1 131 703 -31 738 238 107 5 chr9 94114788 94114994 -23747633 + LTR56 LTR ERV1 219 445 0 1864 152 3 0 chr9 94115118 94115420 -23747207 + AluSx SINE Alu 1 303 -9 25 0 0 0 chr9 94115420 94115445 -23747182 + AT_rich Low_complexity Low_complexity 1 25 0 3226 134 6 26 chr9 94115627 94115915 -23746712 - MER41E LTR ERV1 -16 496 221 2435 40 10 0 chr9 94115915 94116213 -23746414 - AluY SINE Alu -10 301 1 3226 134 6 26 chr9 94116213 94116430 -23746197 - MER41E LTR ERV1 -291 221 1 1998 130 3 0 chr9 94116471 94116772 -23745855 - AluSx SINE Alu -10 302 1 392 196 161 89 chr9 94116866 94116936 -23745691 - MIR SINE MIR -46 216 152 1686 134 0 4 chr9 94116936 94117189 -23745438 - AluJo SINE Alu -16 296 45 392 196 161 89 chr9 94117189 94117286 -23745341 - MIR SINE MIR -110 152 37 2071 144 82 56 chr9 94117923 94117987 -23744640 - L1MB7 LINE L1 -7 6177 6116 2250 93 3 0 chr9 94117987 94118289 -23744338 - AluSp SINE Alu -10 303 1 2071 144 82 56 chr9 94118289 94118674 -23743953 - L1MB7 LINE L1 -68 6116 5716 1622 178 0 34 chr9 94118749 94119070 -23743557 - AluSg SINE Alu 0 310 1 1960 105 27 10 chr9 94119215 94119509 -23743118 + AluSg SINE Alu 11 309 -1 942 154 13 0 chr9 94119523 94119679 -23742948 - LTR64 LTR ERVK -301 257 100 391 279 84 22 chr9 94119886 94120065 -23742562 + MIR SINE MIR 2 191 -71 2090 105 16 0 chr9 94120282 94120587 -23742040 - AluSg SINE Alu 0 310 1 2143 82 7 7 chr9 94120595 94120898 -23741729 - AluSx SINE Alu -9 303 1 373 284 152 42 chr9 94120898 94121162 -23741465 + L2 LINE L2 3008 3300 -13 308 276 102 10 chr9 94121186 94121284 -23741343 - MIR SINE MIR -82 126 20 241 325 205 0 chr9 94122188 94122354 -23740273 + L2 LINE L2 2404 2603 -711 270 0 0 0 chr9 94122456 94122486 -23740141 + (TG)n Simple_repeat Simple_repeat 2 31 0 633 314 52 65 chr9 94122900 94123225 -23739402 + L2 LINE L2 2866 3186 -86 283 276 124 9 chr9 94123258 94123363 -23739264 - MIR SINE MIR -96 166 50 692 118 131 207 chr9 94123649 94123886 -23738741 - AluSq SINE Alu -89 224 6 29 0 0 0 chr9 94124064 94124093 -23738534 + AT_rich Low_complexity Low_complexity 1 29 0 2243 113 0 7 chr9 94124093 94124403 -23738224 - AluSg SINE Alu -1 309 2 586 227 7 64 chr9 94126160 94126301 -23736326 - L2 LINE L2 0 3272 3140 1515 188 4 14 chr9 94126803 94127079 -23735548 - AluJo SINE Alu -9 303 31 836 176 0 0 chr9 94127119 94127244 -23735383 + FLAM_C SINE Alu 1 125 -18 2238 109 3 7 chr9 94127376 94127678 -23734949 - AluSp SINE Alu -11 302 2 2211 129 0 3 chr9 94127690 94127993 -23734634 - AluSg SINE Alu -8 302 1 2343 94 6 25 chr9 94128159 94128478 -23734149 - AluSq SINE Alu 0 313 1 1886 161 0 7 chr9 94128684 94128975 -23733652 + AluJb SINE Alu 5 293 -19 565 164 121 43 chr9 94128987 94129103 -23733524 + FLAM_A SINE Alu 1 125 -8 2117 64 0 19 chr9 94129452 94129716 -23732911 + AluY SINE Alu 41 299 -12 497 232 80 24 chr9 94129943 94130068 -23732559 - FLAM_A SINE Alu -1 132 1 2877 10 0 0 chr9 94130294 94130600 -23732027 - AluY SINE Alu -5 306 1 536 301 114 37 chr9 94132216 94132470 -23730157 + L2 LINE L2 1723 2009 -1305 1718 169 14 17 chr9 94132470 94132760 -23729867 - AluJb SINE Alu -23 289 1 536 301 114 37 chr9 94132760 94132830 -23729797 + L2 LINE L2 2009 2072 -1242 2305 99 0 7 chr9 94132833 94133135 -23729492 - AluSc SINE Alu -9 300 1 2279 66 107 0 chr9 94133150 94133469 -23729158 - THE1A LTR MaLR -2 353 1 6654 86 15 35 chr9 94133469 94134451 -23728176 - THE1A-int LTR MaLR 0 1580 618 1233 155 6 0 chr9 94134451 94134632 -23727995 + AluSq SINE Alu 113 294 -19 4359 82 15 0 chr9 94134711 94135317 -23727310 - THE1A-int LTR MaLR -965 615 1 2766 69 17 3 chr9 94135317 94135667 -23726960 - THE1A LTR MaLR 0 355 1 532 219 182 11 chr9 94135667 94135854 -23726773 + L2 LINE L2 2129 2347 -967 844 151 59 20 chr9 94136142 94136294 -23726333 - AluJb SINE Alu -18 294 137 689 159 43 14 chr9 94136321 94136459 -23726168 - MER20 DNA MER1_type -70 149 8 347 229 187 22 chr9 94136583 94136744 -23725883 - MLT1J2 LTR MaLR 0 409 266 2261 120 0 0 chr9 94136959 94137258 -23725369 - AluSx SINE Alu -13 299 1 378 239 277 16 chr9 94137266 94137454 -23725173 - MIR SINE MIR -24 238 2 2199 104 0 26 chr9 94137618 94137925 -23724702 + AluSx SINE Alu 13 311 -1 363 276 160 13 chr9 94138098 94138254 -23724373 - MIR SINE MIR -44 218 40 1736 172 0 35 chr9 94138949 94139268 -23723359 + AluJb SINE Alu 1 308 -4 610 271 184 0 chr9 94139845 94140063 -23722564 - MIR SINE MIR -3 259 2 2160 126 3 0 chr9 94140684 94140977 -23721650 + AluJb SINE Alu 1 294 -18 227 288 31 98 chr9 94141037 94141200 -23721427 - L2 LINE L2 -203 3069 2918 370 262 83 40 chr9 94141559 94141742 -23720885 - MIR SINE MIR -46 216 18 263 281 133 22 chr9 94141997 94142132 -23720495 + L2 LINE L2 3164 3313 0 360 313 112 72 chr9 94142299 94142338 -23720289 + L1MC4a LINE L1 5574 5610 -2198 2286 84 0 3 chr9 94142338 94142660 -23719967 + AluSx SINE Alu 1 321 0 360 313 112 72 chr9 94142660 94142697 -23719930 + L1MC4a LINE L1 5610 5644 -2164 1546 164 7 69 chr9 94142697 94143186 -23719441 + AluJb SINE Alu 1 470 0 360 313 112 72 chr9 94143186 94143318 -23719309 + L1MC4a LINE L1 5644 5769 -2039 437 116 0 70 chr9 94143318 94143353 -23719274 + MADE1 DNA Mariner 1 37 -43 2604 44 3 0 chr9 94143353 94143648 -23718979 - AluSp SINE Alu -17 296 1 437 116 0 70 chr9 94143648 94143698 -23718929 + MADE1 DNA Mariner 37 80 0 360 313 112 72 chr9 94143698 94143888 -23718739 + L1MC4a LINE L1 5769 5992 -1816 637 249 107 10 chr9 94144011 94144208 -23718419 - MIR SINE MIR -30 232 17 805 143 8 8 chr9 94144249 94144382 -23718245 + FLAM_C SINE Alu 1 133 0 30 0 0 0 chr9 94144706 94144736 -23717891 + GC_rich Low_complexity Low_complexity 1 30 0 231 36 0 0 chr9 94144840 94144868 -23717759 + (CGG)n Simple_repeat Simple_repeat 2 29 0 23 0 0 0 chr9 94144882 94144905 -23717722 + GC_rich Low_complexity Low_complexity 1 23 0 426 343 29 11 chr9 94145234 94145409 -23717218 + MIR3 SINE MIR 20 197 -11 344 275 147 72 chr9 94145941 94146261 -23716366 + L2 LINE L2 2924 3267 -5 732 237 85 0 chr9 94146274 94146451 -23716176 - MIR SINE MIR -11 251 60 234 0 0 0 chr9 94147056 94147082 -23715545 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 467 277 14 34 chr9 94147140 94147288 -23715339 + MIR SINE MIR 9 153 -109 548 258 26 19 chr9 94147354 94147509 -23715118 - MIR SINE MIR -78 184 29 941 184 29 6 chr9 94147648 94147822 -23714805 + MER45A DNA AcHobo 1 178 0 2559 60 0 0 chr9 94148203 94148501 -23714126 - AluSx SINE Alu -8 304 7 365 325 123 6 chr9 94148584 94148747 -23713880 - MIR SINE MIR -20 242 61 772 99 0 9 chr9 94148768 94148879 -23713748 - HY1 scRNA scRNA -2 110 1 2272 92 17 7 chr9 94149007 94149302 -23713325 - AluSq SINE Alu -15 298 1 2617 58 0 0 chr9 94149316 94149625 -23713002 - AluY SINE Alu -2 309 1 2352 112 0 0 chr9 94149664 94149976 -23712651 - AluSx SINE Alu 0 312 1 251 299 165 16 chr9 94150733 94150860 -23711767 + L2 LINE L2 2554 2699 -615 1561 200 0 4 chr9 94150881 94151161 -23711466 - AluJo SINE Alu -12 300 22 2311 129 0 0 chr9 94151176 94151487 -23711140 - AluSx SINE Alu -1 311 1 187 231 15 92 chr9 94151493 94151558 -23711069 + L2 LINE L2 2694 2753 -561 886 276 44 86 chr9 94151566 94151686 -23710941 + L2 LINE L2 2884 3007 -265 1900 129 26 51 chr9 94151686 94151997 -23710630 + AluSx SINE Alu 4 306 -6 886 276 44 86 chr9 94151997 94152282 -23710345 + L2 LINE L2 3007 3272 0 234 198 0 3 chr9 94152491 94152544 -23710083 - HAL1b LINE L1 -862 486 441 309 26 0 0 chr9 94152604 94152642 -23709985 + (CA)n Simple_repeat Simple_repeat 1 38 0 295 307 118 0 chr9 94153018 94153145 -23709482 + MIR SINE MIR 98 239 -23 2078 128 0 14 chr9 94153162 94153859 -23708768 - AluJb SINE Alu 0 693 1 2303 87 0 20 chr9 94153237 94153536 -23709091 + AluSq SINE Alu 1 293 -20 181 319 92 17 chr9 94154097 94154216 -23708411 - MIR3 SINE MIR -78 130 3 1865 158 6 32 chr9 94154368 94154679 -23707948 + AluJb SINE Alu 3 305 -7 449 325 128 14 chr9 94154944 94155454 -23707173 - L2 LINE L2 -218 3054 2470 1711 198 26 81 chr9 94156052 94156119 -23706508 - MLT1D LTR MaLR 0 505 436 1193 441 0 3 chr9 94156119 94156436 -23706191 + AluSx SINE Alu 1 316 0 1711 198 26 81 chr9 94156436 94156457 -23706170 - MLT1D LTR MaLR -69 436 415 2213 93 18 0 chr9 94156457 94156758 -23705869 - AluSq SINE Alu 0 306 1 1711 198 26 81 chr9 94156758 94157196 -23705431 - MLT1D LTR MaLR -90 415 5 425 328 70 39 chr9 94157290 94157549 -23705078 - L3 LINE CR1 -81 1496 1230 397 291 62 112 chr9 94157939 94158296 -23704331 - L2 LINE L2 -1 3271 2933 821 286 32 20 chr9 94158338 94158590 -23704037 + MIR SINE MIR 8 262 0 2279 114 10 3 chr9 94158747 94159054 -23703573 - AluSx SINE Alu -2 310 2 180 0 0 0 chr9 94159133 94159153 -23703474 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 2329 88 0 0 chr9 94159153 94159436 -23703191 - AluSg SINE Alu -26 284 2 879 130 0 43 chr9 94159437 94159575 -23703052 - AluJo/FLAM SINE Alu -170 132 1 957 272 34 4 chr9 94159736 94159975 -23702652 - MIR SINE MIR -16 246 1 410 232 85 55 chr9 94160036 94160200 -23702427 - L3 LINE CR1 -198 1379 1211 259 308 120 17 chr9 94160553 94160670 -23701957 + MIR SINE MIR 23 151 -57 299 179 15 0 chr9 94160685 94160752 -23701875 + (TA)n Simple_repeat Simple_repeat 2 69 0 444 200 0 0 chr9 94160785 94160860 -23701767 - MIR SINE MIR -186 76 2 524 274 121 0 chr9 94160938 94161095 -23701532 - MIR SINE MIR -6 256 81 332 241 69 11 chr9 94162066 94162153 -23700474 - MIR SINE MIR -149 113 22 537 320 69 9 chr9 94162227 94162458 -23700169 - MIR SINE MIR -11 251 7 2215 178 48 40 chr9 94162466 94162965 -23699662 - MLT1D LTR MaLR -2 503 1 348 24 0 0 chr9 94163588 94163629 -23698998 + (TCCA)n Simple_repeat Simple_repeat 1 41 0 919 247 10 0 chr9 94163862 94164056 -23698571 + MIR SINE MIR 67 262 0 382 198 12 47 chr9 94164037 94164123 -23698504 - MIR SINE MIR -100 162 80 * 1723 146 113 0 chr9 94164344 94164619 -23698008 + AluJo SINE Alu 1 306 -6 647 271 21 27 chr9 94164767 94164955 -23697672 - MIR SINE MIR -24 238 52 1019 249 22 91 chr9 94165019 94165131 -23697496 - MER20B DNA MER1_type -394 389 271 2054 154 10 0 chr9 94165131 94165430 -23697197 + AluJo SINE Alu 1 302 -10 1019 249 22 91 chr9 94165430 94165734 -23696893 - MER20B DNA MER1_type -512 271 2 609 321 38 5 chr9 94166055 94166267 -23696360 - MIR SINE MIR -10 252 34 1609 199 0 50 chr9 94166300 94166475 -23696152 - AluJo SINE Alu -4 308 155 2473 81 0 0 chr9 94166475 94166772 -23695855 - AluSg SINE Alu -13 297 1 1609 199 0 50 chr9 94166772 94166913 -23695714 - AluJo SINE Alu -157 155 8 187 311 107 33 chr9 94167456 94167578 -23695049 - L2 LINE L2 -3 3269 3139 185 364 76 0 chr9 94167621 94167753 -23694874 - L2 LINE L2 -376 2938 2797 440 275 37 0 chr9 94168031 94168140 -23694487 - L2 LINE L2 -2 3311 3199 2336 100 0 28 chr9 94168371 94168690 -23693937 + AluSx SINE Alu 1 310 -2 1964 147 3 10 chr9 94168711 94169004 -23693623 + AluJb SINE Alu 5 295 -17 2046 125 4 4 chr9 94169799 94170114 -23692513 - AluSx SINE Alu 0 315 1 2382 103 3 3 chr9 94170595 94170907 -23691720 - AluSq SINE Alu -1 312 1 29 28 0 0 chr9 94170907 94170943 -23691684 + AT_rich Low_complexity Low_complexity 1 36 0 242 300 50 25 chr9 94171038 94171158 -23691469 - MIR SINE MIR -67 141 19 263 291 156 28 chr9 94171198 94171339 -23691288 + MIR SINE MIR 34 192 -70 2134 132 0 0 chr9 94171357 94171653 -23690974 - AluSx SINE Alu -14 298 3 1597 178 0 8 chr9 94172453 94172711 -23689916 - AluJb SINE Alu -17 295 40 358 82 0 0 chr9 94173059 94173108 -23689519 + AluJ/FLAM SINE Alu 9 57 -245 27 62 0 0 chr9 94173696 94173744 -23688883 + AT_rich Low_complexity Low_complexity 1 48 0 841 147 7 7 chr9 94173864 94174000 -23688627 - AluJb SINE Alu -176 136 1 2239 109 3 0 chr9 94174833 94175127 -23687500 - AluSq SINE Alu -18 295 1 327 360 51 0 chr9 94175129 94175307 -23687320 - MIR SINE MIR -64 198 12 638 110 81 103 chr9 94175489 94175595 -23687032 + AluJo/FLAM SINE Alu 1 105 -197 2154 101 7 17 chr9 94175595 94175891 -23686736 - AluSq SINE Alu -20 293 1 638 110 81 103 chr9 94175891 94175920 -23686707 + AluJo/FLAM SINE Alu 105 133 -169 1661 148 10 27 chr9 94175961 94176259 -23686368 - L1MB3 LINE L1 -1 6182 5890 207 219 0 0 chr9 94176281 94176322 -23686305 + T-rich Low_complexity Low_complexity 1 41 0 34 0 0 0 chr9 94176569 94176603 -23686024 + AT_rich Low_complexity Low_complexity 1 34 0 866 147 0 0 chr9 94176603 94176732 -23685895 - FLAM_C SINE Alu -4 129 1 255 114 45 0 chr9 94177664 94177708 -23684919 - MIR3 SINE MIR -54 154 109 188 363 40 96 chr9 94178261 94178512 -23684115 + L2 LINE L2 2950 3186 -86 470 269 12 31 chr9 94178639 94178749 -23683878 + MIR3 SINE MIR 46 154 -54 2163 113 0 10 chr9 94178749 94179049 -23683578 - AluSx SINE Alu -15 297 1 470 269 12 31 chr9 94179049 94179098 -23683529 + MIR3 SINE MIR 154 202 -6 303 317 0 0 chr9 94179224 94179328 -23683299 + MIR SINE MIR 42 145 -63 292 211 0 40 chr9 94179785 94179861 -23682766 + MIR SINE MIR 112 184 -78 28 0 0 0 chr9 94179890 94179918 -23682709 + AT_rich Low_complexity Low_complexity 1 28 0 749 147 0 77 chr9 94179918 94180061 -23682566 - FLAM_C SINE Alu -1 132 1 442 249 136 38 chr9 94180156 94180369 -23682258 + MIR SINE MIR 24 257 -5 255 229 183 59 chr9 94180569 94180722 -23681905 + MIR SINE MIR 79 250 -12 3779 188 35 83 chr9 94180767 94181814 -23680813 - L1M4 LINE L1 -1085 5061 3965 1481 157 21 102 chr9 94181814 94182146 -23680481 - AluYb8 SINE Alu -12 306 2 3779 188 35 83 chr9 94182146 94182188 -23680439 - L1M4 LINE L1 -2181 3965 3923 2020 117 0 11 chr9 94182188 94182499 -23680128 - AluSc SINE Alu 0 308 1 1528 153 59 38 chr9 94182507 94182646 -23679981 - AluJo SINE Alu -14 298 163 1645 166 44 37 chr9 94182646 94182941 -23679686 - AluSx SINE Alu -15 297 1 1528 153 59 38 chr9 94182941 94183088 -23679539 - AluJo SINE Alu -149 163 6 3779 188 35 83 chr9 94183088 94183149 -23679478 - L1M4 LINE L1 -2128 4018 3956 574 268 149 75 chr9 94183155 94183591 -23679036 - L1MEc LINE L1 -3962 2625 2223 2225 122 0 0 chr9 94183591 94183894 -23678733 - AluSx SINE Alu -9 303 1 574 268 149 75 chr9 94183894 94184718 -23677909 - L1MEc LINE L1 -4364 2223 1271 1825 157 55 7 chr9 94184770 94185063 -23677564 - AluJo SINE Alu -5 307 1 327 270 206 32 chr9 94185063 94185311 -23677316 - L1MEc LINE L1 -5186 1223 933 2548 69 0 0 chr9 94185585 94185890 -23676737 - AluY SINE Alu -6 305 1 229 267 33 0 chr9 94186096 94186156 -23676471 - L1MEc LINE L1 -5998 398 337 400 174 12 70 chr9 94186779 94186865 -23675762 + MLT2E LTR ERVL 13 93 -535 604 216 0 0 chr9 94186973 94187098 -23675529 - FLAM_C SINE Alu -5 138 14 1863 221 193 33 chr9 94187130 94187773 -23674854 - LTR41 LTR ERVL -11 762 17 693 277 39 22 chr9 94187804 94188035 -23674592 + MIR SINE MIR 4 238 -24 1198 78 0 0 chr9 94188077 94188243 -23674384 + AluSg/x SINE Alu 143 308 0 1988 131 23 13 chr9 94188393 94188529 -23674098 + AluSx SINE Alu 1 134 -178 2415 75 3 7 chr9 94188529 94188834 -23673793 + AluSp SINE Alu 1 304 -9 1988 131 23 13 chr9 94188834 94189003 -23673624 + AluSx SINE Alu 134 309 -3 2107 143 28 22 chr9 94189028 94189391 -23673236 + MLT1A1 LTR MaLR 1 365 0 226 312 107 51 chr9 94189413 94189666 -23672961 + L2 LINE L2 2709 2975 -339 2545 51 0 0 chr9 94190832 94191127 -23671500 - AluY SINE Alu -16 295 1 291 279 66 66 chr9 94191185 94191321 -23671306 - MIR SINE MIR -75 187 52 251 211 0 122 chr9 94192192 94192234 -23670393 + MIR SINE MIR 82 109 -153 1931 157 0 25 chr9 94192234 94192552 -23670075 - AluJo SINE Alu -2 310 1 251 211 0 122 chr9 94192552 94192599 -23670028 + MIR SINE MIR 109 160 -102 263 255 77 43 chr9 94192729 94192890 -23669737 + MIR3 SINE MIR 20 187 -21 370 272 109 87 chr9 94193073 94193471 -23669156 + L2 LINE L2 2554 3011 -302 2151 115 10 0 chr9 94193471 94193767 -23668860 - AluSx SINE Alu -13 299 1 370 272 109 87 chr9 94193767 94194018 -23668609 + L2 LINE L2 3011 3255 -58 2043 144 0 13 chr9 94194814 94195119 -23667508 - AluSx SINE Alu -11 301 1 189 233 23 0 chr9 94195223 94195266 -23667361 + L2 LINE L2 3265 3308 -5 336 257 29 9 chr9 94195318 94195423 -23667204 - L2 LINE L2 -4 3309 3203 195 302 186 6 chr9 94195634 94195806 -23666821 - MIR SINE MIR -7 255 53 398 319 72 30 chr9 94195935 94196170 -23666457 + MIR SINE MIR 2 246 -16 345 184 126 0 chr9 94197077 94197164 -23665463 - MLT1E1 LTR MaLR -413 241 144 970 301 121 40 chr9 94197199 94198713 -23663914 + L1MC/D LINE L1 3014 4668 -1478 372 22 0 0 chr9 94198753 94198798 -23663829 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 302 311 19 38 chr9 94198809 94199018 -23663609 + L1MC/D LINE L1 4801 5005 -1141 764 246 39 0 chr9 94199158 94199361 -23663266 + L1MC/D LINE L1 5254 5464 -2344 265 370 10 0 chr9 94199416 94199516 -23663111 + L1MC/D LINE L1 5559 5659 -2149 292 105 0 0 chr9 94199517 94199555 -23663072 - THE1C LTR MaLR -1 374 337 1831 79 4 48 chr9 94199557 94199809 -23662818 + AluSq SINE Alu 1 241 -72 221 311 0 16 chr9 94199998 94200059 -23662568 + polypyrimidine Low_complexity Low_complexity 1 60 0 2057 131 10 0 chr9 94200059 94200350 -23662277 - AluSx SINE Alu -18 294 1 229 243 28 84 chr9 94200996 94201103 -23661524 + MIR SINE MIR 23 123 -85 347 285 52 41 chr9 94201461 94201633 -23660994 - L2 LINE L2 -3 3310 3137 2056 136 3 23 chr9 94201635 94201944 -23660683 + AluSx SINE Alu 2 304 -8 403 189 11 0 chr9 94202547 94202642 -23659985 - L1MA5 LINE L1 -3 6297 6202 297 256 203 48 chr9 94202669 94202857 -23659770 - L1ME4a LINE L1 -2 6119 5961 1865 140 7 20 chr9 94202857 94203157 -23659470 - AluJo SINE Alu -16 296 1 297 256 203 48 chr9 94203157 94203289 -23659338 - L1ME4a LINE L1 -160 5961 5851 201 39 0 0 chr9 94203289 94203315 -23659312 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1683 153 25 29 chr9 94203315 94203462 -23659165 - AluJb SINE Alu -32 280 133 2378 98 3 0 chr9 94203462 94203757 -23658870 - AluSp SINE Alu -17 296 1 1683 153 25 29 chr9 94203757 94203890 -23658737 - AluJb SINE Alu -179 133 1 297 256 203 48 chr9 94203890 94203961 -23658666 - L1ME4a LINE L1 -269 5852 5665 313 256 29 80 chr9 94204021 94204158 -23658469 + MIR SINE MIR 62 191 -71 238 323 62 0 chr9 94204181 94204277 -23658350 + L2 LINE L2 3195 3296 -17 373 229 13 10 chr9 94204716 94204820 -23657807 + MLT1I LTR MaLR 320 408 -1 474 257 178 10 chr9 94204838 94205040 -23657587 - MIR SINE MIR -16 246 11 605 225 156 6 chr9 94205057 94205217 -23657410 - MER5A DNA MER1_type 0 189 6 283 319 121 25 chr9 94205997 94206154 -23656473 + MIR SINE MIR 79 250 -12 378 329 19 25 chr9 94206243 94206401 -23656226 + MIR3 SINE MIR 46 202 -6 662 232 77 17 chr9 94206597 94206778 -23655849 + L2 LINE L2 2555 2746 -568 786 266 82 40 chr9 94206827 94207207 -23655420 + L1M4c LINE L1 1014 1415 -4969 2475 81 7 0 chr9 94207207 94207516 -23655111 + AluSp SINE Alu 1 311 -2 786 266 82 40 chr9 94207516 94207559 -23655068 + L1M4c LINE L1 1415 1455 -4929 710 275 50 23 chr9 94207592 94207826 -23654801 + L1M4c LINE L1 1741 1984 -4579 2249 115 0 0 chr9 94207826 94208122 -23654505 - AluJo SINE Alu -16 296 1 710 275 50 23 chr9 94208122 94208145 -23654482 + L1M4c LINE L1 1984 2005 -4558 231 301 115 27 chr9 94208404 94208587 -23654040 + L2 LINE L2 2936 3134 -179 722 174 0 7 chr9 94208598 94208742 -23653885 + CT-rich Low_complexity Low_complexity 2 144 0 1614 141 63 22 chr9 94208766 94209035 -23653592 - AluJo SINE Alu -32 280 1 477 296 0 35 chr9 94209042 94209214 -23653413 + L2 LINE L2 3143 3308 -5 276 311 46 33 chr9 94209554 94209705 -23652922 + L2 LINE L2 2499 2651 -663 235 262 215 20 chr9 94209921 94210070 -23652557 + L2 LINE L2 2929 3106 -166 198 250 0 0 chr9 94210116 94210156 -23652471 + L2 LINE L2 3265 3304 -9 1682 167 6 22 chr9 94210216 94210533 -23652094 - AluJb SINE Alu 0 312 1 437 202 24 0 chr9 94210555 94210639 -23651988 - L2 LINE L2 -1 3271 3186 395 261 0 54 chr9 94210654 94210685 -23651942 + L2 LINE L2 3204 3235 -78 2449 68 0 0 chr9 94210685 94210980 -23651647 - AluY SINE Alu -16 295 1 395 261 0 54 chr9 94210980 94211059 -23651568 + L2 LINE L2 3235 3308 -5 210 37 0 0 chr9 94211300 94211327 -23651300 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1671 188 38 0 chr9 94212632 94212924 -23649703 + AluJo SINE Alu 1 303 -9 2380 82 7 3 chr9 94214186 94214491 -23648136 - AluSp SINE Alu -7 306 1 350 238 19 9 chr9 94215165 94215270 -23647357 - L1MC4a LINE L1 -1862 5946 5841 496 217 42 28 chr9 94215527 94215670 -23646957 + MIR SINE MIR 105 249 -13 302 244 83 75 chr9 94216292 94216434 -23646193 + MIR SINE MIR 6 148 -114 2027 120 10 45 chr9 94216434 94216743 -23645884 - AluSx SINE Alu -14 298 1 302 244 83 75 chr9 94216743 94216857 -23645770 + MIR SINE MIR 148 260 -2 2111 51 0 77 chr9 94217238 94217551 -23645076 - L1PA5 LINE L1 0 6154 5866 423 306 19 19 chr9 94217580 94217740 -23644887 - MER5B DNA MER1_type -4 174 15 564 277 17 11 chr9 94217782 94217959 -23644668 + MER5B DNA MER1_type 1 178 0 2083 121 47 25 chr9 94218196 94218561 -23644066 + THE1C LTR MaLR 1 373 -2 516 286 119 4 chr9 94218919 94219146 -23643481 + MIR SINE MIR 10 262 0 2188 84 0 66 chr9 94219238 94219571 -23643056 - AluY SINE Alu 0 311 1 1737 177 11 0 chr9 94219574 94219857 -23642770 - AluJb SINE Alu -26 286 1 3581 205 27 12 chr9 94219965 94220779 -23641848 - L1MD2 LINE L1 -64 6295 5470 725 142 0 0 chr9 94220815 94220928 -23641699 + AluJb SINE Alu 199 311 -1 2812 174 20 38 chr9 94220928 94221683 -23640944 - L1MC4a LINE L1 -385 5799 5060 2139 129 0 3 chr9 94221683 94221977 -23640650 - AluSx SINE Alu -19 293 1 2812 174 20 38 chr9 94221977 94222192 -23640435 - L1MC4a LINE L1 -1124 5060 4843 372 261 144 62 chr9 94222287 94222701 -23639926 + MLT1H LTR MaLR 1 547 -8 3933 126 18 13 chr9 94222780 94223399 -23639228 - L1PA15 LINE L1 0 6165 5544 925 284 162 8 chr9 94223476 94223871 -23638756 - MER113 DNA MER1_type? -5 516 61 228 172 0 0 chr9 94223975 94224033 -23638594 + CT-rich Low_complexity Low_complexity 2 59 0 256 104 19 84 chr9 94224058 94224088 -23638539 - HERV17 LTR ERV1 -7779 847 817 210 105 0 0 chr9 94224088 94224126 -23638501 + (TCTG)n Simple_repeat Simple_repeat 1 38 0 256 104 19 84 chr9 94224126 94224249 -23638378 - HERV17 LTR ERV1 -7809 817 704 215 214 14 0 chr9 94224249 94224319 -23638308 + CT-rich Low_complexity Low_complexity 1 71 0 1387 199 85 72 chr9 94224336 94224669 -23637958 - MLT2B1 LTR ERVL -119 401 1 264 160 20 0 chr9 94225761 94225811 -23636816 + MIR SINE MIR 94 144 -64 1793 186 0 3 chr9 94226066 94226373 -23636254 - AluJb SINE Alu -6 306 1 207 0 0 0 chr9 94226588 94226611 -23636016 + (ATTG)n Simple_repeat Simple_repeat 2 24 0 1907 136 14 0 chr9 94226611 94226892 -23635735 - AluSx SINE Alu -27 285 1 203 228 53 0 chr9 94226920 94226977 -23635650 - MIR SINE MIR -1 261 202 * 402 285 130 15 chr9 94226976 94227176 -23635451 + MIR SINE MIR 31 253 -9 294 329 6 60 chr9 94227965 94228132 -23634495 - MIR3 SINE MIR -23 185 28 787 302 109 4 chr9 94228139 94228387 -23634240 + MLT1J LTR MaLR 1 274 -237 339 252 108 58 chr9 94228522 94228661 -23633966 - MLT1H LTR MaLR -195 354 209 214 147 0 0 chr9 94228830 94228864 -23633763 + (TGGA)n Simple_repeat Simple_repeat 3 36 0 213 255 20 0 chr9 94229197 94229248 -23633379 + MIR SINE MIR 22 73 -135 2087 137 0 28 chr9 94229366 94229687 -23632940 - AluSx SINE Alu 0 312 1 640 66 0 22 chr9 94229708 94229799 -23632828 - Alu SINE Alu -3 309 221 21 57 0 0 chr9 94229834 94229869 -23632758 + AT_rich Low_complexity Low_complexity 1 35 0 2067 125 0 0 chr9 94230380 94230681 -23631946 - AluSx SINE Alu 0 302 2 214 300 118 9 chr9 94231569 94231679 -23630948 - MIR SINE MIR -14 248 127 184 284 155 0 chr9 94231828 94231944 -23630683 + MIR3 SINE MIR 71 204 -4 1103 251 60 3 chr9 94232169 94232504 -23630123 + LTR37A LTR ERV1 71 424 -2 249 180 49 16 chr9 94233479 94233540 -23629087 - MIR SINE MIR -112 150 88 2150 206 95 118 chr9 94233874 94234685 -23627942 + LTR1B LTR ERV1 35 826 0 825 173 95 28 chr9 94234833 94235012 -23627615 - MER3 DNA MER1_type -4 205 15 237 307 31 43 chr9 94235141 94235304 -23627323 - MLT1J LTR MaLR -326 185 25 344 262 14 83 chr9 94236169 94236262 -23626365 + MIR3 SINE MIR 68 149 -59 671 232 103 5 chr9 94236262 94236456 -23626171 + MER58C DNA MER1_type 3 215 0 344 262 14 83 chr9 94236456 94236507 -23626120 + MIR3 SINE MIR 149 202 -6 2861 16 0 3 chr9 94236846 94237162 -23625465 - AluYb8 SINE Alu -3 315 1 191 129 0 0 chr9 94237481 94237512 -23625115 + MIR SINE MIR 84 114 -94 21 0 0 0 chr9 94237645 94237666 -23624961 + AT_rich Low_complexity Low_complexity 1 21 0 330 227 55 70 chr9 94237676 94237804 -23624823 - MIR SINE MIR -14 248 123 678 184 0 0 chr9 94238279 94238393 -23624234 - FLAM_C SINE Alu -28 115 2 1954 133 4 11 chr9 94238638 94238917 -23623710 + AluSq SINE Alu 3 279 -34 199 360 0 0 chr9 94238944 94239019 -23623608 - MIR SINE MIR -132 130 56 358 328 53 12 chr9 94239142 94239313 -23623314 - MIR SINE MIR -74 188 11 2249 104 10 0 chr9 94239402 94239699 -23622928 - AluSg SINE Alu -10 300 1 412 228 18 18 chr9 94239997 94240111 -23622516 - MIR SINE MIR -102 160 47 257 331 33 8 chr9 94240512 94240633 -23621994 + MIR3 SINE MIR 48 171 -37 648 170 0 57 chr9 94241770 94241911 -23620716 - MLT1F1 LTR MaLR 0 567 435 271 272 82 39 chr9 94242272 94242478 -23620149 - L1ME3 LINE L1 -214 5948 5734 21 0 0 0 chr9 94243069 94243090 -23619537 + AT_rich Low_complexity Low_complexity 1 21 0 603 100 0 0 chr9 94243090 94243170 -23619457 - AluSp/q SINE Alu -17 296 217 2280 86 3 7 chr9 94243348 94243639 -23618988 - AluY SINE Alu -17 294 5 191 301 10 48 chr9 94243750 94243853 -23618774 + MIR SINE MIR 118 216 -46 190 298 0 0 chr9 94243883 94243930 -23618697 - L3 LINE CR1 -143 1434 1388 1031 318 134 20 chr9 94244239 94244304 -23618323 + L2 LINE L2 1891 1947 -1367 1914 135 0 37 chr9 94244304 94244601 -23618026 - AluJb SINE Alu -22 290 5 1031 318 134 20 chr9 94244601 94245281 -23617346 + L2 LINE L2 1947 2721 -593 1531 194 22 64 chr9 94245653 94246060 -23616567 + MLT1B LTR MaLR 1 390 0 1994 119 3 46 chr9 94246090 94246127 -23616500 + AluSx SINE Alu 1 38 -274 2377 85 0 0 chr9 94246127 94246422 -23616205 - AluSc SINE Alu -14 295 1 1994 119 3 46 chr9 94246422 94246686 -23615941 + AluSx SINE Alu 38 289 -23 875 304 65 33 chr9 94246686 94247529 -23615098 + L1ME3A LINE L1 4185 5054 -1092 599 126 0 0 chr9 94247529 94247616 -23615011 + AluS SINE Alu 2 88 -224 1214 151 32 32 chr9 94247786 94248005 -23614622 + MER20 DNA MER1_type 1 219 0 928 322 52 22 chr9 94248058 94248635 -23613992 + L1ME3A LINE L1 5259 5852 -318 2228 79 3 63 chr9 94248782 94249099 -23613528 - AluY SINE Alu -13 298 1 255 238 9 29 chr9 94249250 94249355 -23613272 - L1MC4 LINE L1 -1339 6703 6601 559 128 23 0 chr9 94249365 94249451 -23613176 - MLT1B LTR MaLR -3 387 300 696 100 0 0 chr9 94249551 94249641 -23612986 - MLT1B LTR MaLR -300 90 1 235 319 44 39 chr9 94249679 94249861 -23612766 - L1P LINE L1 -2361 3785 3603 206 256 61 0 chr9 94250067 94250149 -23612478 + L2 LINE L2 2702 2788 -526 845 210 6 6 chr9 94250199 94250356 -23612271 - AluJb SINE Alu -19 293 137 184 269 59 59 chr9 94250361 94250480 -23612147 + L2 LINE L2 2945 3063 -209 649 239 40 28 chr9 94251291 94251467 -23611160 + MLT1B LTR MaLR 1 178 -196 398 22 67 45 chr9 94251467 94251556 -23611071 + CT-rich Low_complexity Low_complexity 1 91 0 1002 198 11 11 chr9 94251561 94251748 -23610879 + MLT1B LTR MaLR 204 390 0 304 209 0 30 chr9 94252325 94252392 -23610235 + AluS SINE Alu 7 71 -232 1767 225 27 0 chr9 94252405 94252809 -23609818 - L1P LINE L1 -805 5341 4927 259 211 200 11 chr9 94252892 94252987 -23609640 + L2 LINE L2 3200 3312 -1 199 315 102 9 chr9 94253006 94253114 -23609513 + MIR3 SINE MIR 83 200 -8 267 273 201 7 chr9 94253432 94253571 -23609056 + MIR SINE MIR 91 256 -6 602 297 11 5 chr9 94253615 94253800 -23608827 + LTR67 LTR ERVL 360 545 -12 528 300 18 6 chr9 94254434 94254604 -23608023 - MIR3 SINE MIR -3 205 34 2247 96 0 29 chr9 94254887 94255200 -23607427 + AluSc SINE Alu 1 304 -5 306 50 0 0 chr9 94255546 94255586 -23607041 + (CA)n Simple_repeat Simple_repeat 2 41 0 624 188 23 0 chr9 94255656 94255789 -23606838 + L1MA7 LINE L1 6156 6291 0 262 111 0 37 chr9 94255790 94255844 -23606783 + (GGAA)n Simple_repeat Simple_repeat 3 54 0 1444 197 24 28 chr9 94256016 94256306 -23606321 + AluJo SINE Alu 2 290 -22 280 341 0 41 chr9 94256310 94256433 -23606194 - MER5B DNA MER1_type -60 118 1 267 270 0 0 chr9 94256689 94256752 -23605875 - MIR SINE MIR -83 125 63 592 221 31 60 chr9 94256786 94257007 -23605620 + MIR SINE MIR 34 244 -18 1926 149 10 3 chr9 94257464 94257765 -23604862 - AluSx SINE Alu -9 303 1 333 222 127 24 chr9 94257919 94258045 -23604582 + MIR SINE MIR 90 228 -34 1157 154 0 0 chr9 94258518 94258700 -23603927 + AluY SINE Alu 130 311 0 26 50 0 0 chr9 94260239 94260279 -23602348 + AT_rich Low_complexity Low_complexity 1 40 0 2272 104 7 0 chr9 94261074 94261373 -23601254 - AluSp SINE Alu -12 301 1 298 228 123 9 chr9 94261703 94261817 -23600810 + L1ME4a LINE L1 5984 6110 -11 228 182 0 0 chr9 94262540 94262584 -23600043 + A-rich Low_complexity Low_complexity 1 44 0 207 333 20 29 chr9 94262896 94262998 -23599629 - MIR SINE MIR -63 145 45 452 251 207 6 chr9 94263227 94263406 -23599221 - MIR SINE MIR -11 251 37 207 265 0 0 chr9 94264185 94264234 -23598393 + L2 LINE L2 3137 3185 -87 1260 167 31 49 chr9 94264395 94264683 -23597944 - L1MD2 LINE L1 -496 5863 5581 1252 162 4 22 chr9 94264818 94265046 -23597581 - L1MD2 LINE L1 -671 5571 5348 1131 273 103 47 chr9 94265126 94266156 -23596471 - L2 LINE L2 -6 3307 2227 368 208 0 0 chr9 94266267 94266339 -23596288 + MER116 DNA Mariner 1 72 -8 582 278 163 0 chr9 94266346 94266555 -23596072 - MER46C DNA MER2_type -77 261 19 536 315 73 9 chr9 94266593 94266825 -23595802 + L3 LINE CR1 1295 1541 -36 525 298 40 50 chr9 94267678 94268000 -23594627 + L1ME3A LINE L1 5619 5937 -233 188 358 117 8 chr9 94269228 94269348 -23593279 + L2 LINE L2 3167 3299 -14 267 283 17 58 chr9 94270572 94270745 -23591882 + (CAGAGA)n Simple_repeat Simple_repeat 6 171 0 2003 175 16 32 chr9 94270915 94271286 -23591341 - MLT1A1 LTR MaLR 0 365 1 188 286 160 40 chr9 94271465 94271640 -23590987 - L3 LINE CR1 -193 1384 1189 999 304 7 20 chr9 94271647 94271943 -23590684 - MLT1I LTR MaLR -2 407 116 412 191 11 22 chr9 94272407 94272496 -23590131 + MLT1J2 LTR MaLR 344 431 -19 826 265 15 5 chr9 94273622 94273826 -23588801 + MER20 DNA MER1_type 1 206 -13 469 108 10 108 chr9 94273993 94274095 -23588532 - MLT1J2 LTR MaLR -3 447 356 223 241 241 13 chr9 94274771 94274850 -23587777 + MIR SINE MIR 28 124 -84 244 298 196 24 chr9 94275079 94275247 -23587380 + MIR SINE MIR 22 218 -44 313 289 0 36 chr9 94275514 94275597 -23587030 + MIR3 SINE MIR 90 169 -39 764 185 0 15 chr9 94275602 94275732 -23586895 + FLAM_A SINE Alu 2 129 -4 797 179 77 0 chr9 94275748 94275904 -23586723 - MER20 DNA MER1_type -11 208 41 366 273 50 16 chr9 94275910 94276031 -23586596 - MIR SINE MIR -11 251 127 223 301 128 30 chr9 94276152 94276285 -23586342 + MIR3 SINE MIR 3 148 -60 594 349 76 33 chr9 94276568 94277279 -23585348 + L2 LINE L2 2332 3085 -187 7257 121 51 35 chr9 94277279 94278491 -23584136 - Tigger3b DNA MER2_type 0 1231 1 594 349 76 33 chr9 94278491 94278637 -23583990 + L2 LINE L2 3085 3223 -49 1943 144 11 0 chr9 94278898 94279182 -23583445 + L1PA16 LINE L1 5879 6165 -1 1292 170 42 9 chr9 94279391 94279603 -23583024 - MER20 DNA MER1_type 0 219 1 352 295 45 9 chr9 94280067 94280179 -23582448 - MIR3 SINE MIR -19 189 74 219 250 156 16 chr9 94280642 94280706 -23581921 + MIR SINE MIR 20 92 -170 251 254 18 79 chr9 94280806 94280920 -23581707 - MIR SINE MIR -120 142 36 204 329 0 26 chr9 94281014 94281090 -23581537 + MIR SINE MIR 152 225 -37 371 318 76 19 chr9 94281179 94281390 -23581237 - MIR SINE MIR -37 225 3 198 103 0 0 chr9 94282055 94282084 -23580543 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 475 220 105 68 chr9 94282098 94282289 -23580338 + MIR SINE MIR 19 216 -46 330 376 9 0 chr9 94282422 94282531 -23580096 + L2 LINE L2 3163 3272 0 206 294 15 0 chr9 94282598 94282666 -23579961 - MIR SINE MIR -72 136 68 215 303 161 35 chr9 94282796 94283163 -23579464 - L2 LINE L2 -339 2975 2563 271 378 99 7 chr9 94283488 94283639 -23578988 - L3 LINE CR1 -19 1558 1394 424 217 78 16 chr9 94284411 94284540 -23578087 - MIR SINE MIR -61 201 65 1857 207 76 19 chr9 94284866 94285276 -23577351 - MER63B DNA MER1_type 0 436 4 383 306 69 0 chr9 94285493 94285637 -23576990 - MIR SINE MIR -28 234 81 5618 161 7 42 chr9 94287391 94288832 -23573795 - L1MA6 LINE L1 -1 6299 4930 1274 169 5 0 chr9 94288832 94289039 -23573588 - L1PA16 LINE L1 -9 6157 5950 5618 161 7 42 chr9 94289039 94289411 -23573216 - L1MA6 LINE L1 -1370 4930 4547 391 198 19 9 chr9 94289955 94290061 -23572566 - L1MA8 LINE L1 -10 6281 6175 9077 224 49 47 chr9 94290061 94293525 -23569102 - L1PA12 LINE L1 -3291 4293 7 219 171 24 0 chr9 94293879 94293920 -23568707 + (CTA)n Simple_repeat Simple_repeat 3 44 0 564 297 80 29 chr9 94293920 94294159 -23568468 - MIR SINE MIR -5 257 7 287 224 198 35 chr9 94294350 94294466 -23568161 - MLT1H LTR MaLR -64 485 351 1856 153 36 15 chr9 94294552 94294885 -23567742 - L1MC3 LINE L1 -189 7596 7257 1668 181 130 17 chr9 94295113 94295467 -23567160 - MSTD LTR MaLR -2 394 1 1155 312 34 63 chr9 94295565 94296293 -23566334 + L1PA15 LINE L1 208 914 -5873 16197 209 32 10 chr9 94296316 94300092 -23562535 + L1PA15 LINE L1 1330 5020 -1797 2073 114 7 3 chr9 94300092 94300389 -23562238 + AluSg SINE Alu 1 298 -12 16197 209 32 10 chr9 94300389 94300823 -23561804 + L1PA15 LINE L1 5020 5443 -1374 261 0 0 0 chr9 94300823 94300852 -23561775 + (TA)n Simple_repeat Simple_repeat 1 29 0 16197 209 32 10 chr9 94300852 94301819 -23560808 + L1PA15 LINE L1 5443 6630 -187 213 285 15 15 chr9 94302030 94302160 -23560467 + A-rich Low_complexity Low_complexity 3 132 0 3488 42 2 5 chr9 94305391 94305797 -23556830 + L1PA8 LINE L1 5768 6172 0 934 144 156 6 chr9 94306596 94306776 -23555851 + L1PA15 LINE L1 6610 6816 0 21 0 0 0 chr9 94306945 94306966 -23555661 + AT_rich Low_complexity Low_complexity 1 21 0 261 211 0 0 chr9 94307347 94307399 -23555228 - L2 LINE L2 0 3313 3262 199 326 59 56 chr9 94307746 94308034 -23554593 - L2 LINE L2 -167 3105 2817 605 229 58 43 chr9 94308044 94308232 -23554395 + MIR SINE MIR 58 248 -14 2452 78 3 0 chr9 94308956 94309264 -23553363 + AluY SINE Alu 1 309 -2 1095 274 132 36 chr9 94309949 94310691 -23551936 - L1ME4a LINE L1 -14 6107 5295 1357 189 28 4 chr9 94310838 94311086 -23551541 - MER21B LTR ERV1 -124 739 486 1560 219 56 80 chr9 94311163 94311206 -23551421 - MER21B LTR ERV1 -354 509 467 1856 149 26 33 chr9 94311206 94311508 -23551119 - AluJb SINE Alu -12 300 1 1560 219 56 80 chr9 94311508 94311967 -23550660 - MER21B LTR ERV1 -396 467 19 261 321 160 0 chr9 94311976 94312110 -23550517 - MIR SINE MIR -36 172 17 204 214 18 18 chr9 94313339 94313395 -23549232 - L2 LINE L2 0 3313 3258 4593 149 47 0 chr9 94313409 94314133 -23548494 + L1PA16 LINE L1 5391 6148 -18 1158 273 88 58 chr9 94314138 94314709 -23547918 - MLT1L LTR MaLR -27 588 1 241 316 87 0 chr9 94314722 94314918 -23547709 - L1P5 LINE L1 -669 5482 5270 209 322 88 85 chr9 94315475 94315770 -23546857 + L2 LINE L2 2969 3264 -8 394 229 102 34 chr9 94316160 94316278 -23546349 - MIR SINE MIR -1 261 136 2479 184 68 20 chr9 94316624 94317120 -23545507 + Charlie1b DNA MER1_type 2 521 -2 245 337 153 0 chr9 94317265 94317363 -23545264 - L2 LINE L2 0 3272 3160 316 252 76 50 chr9 94317895 94318048 -23544579 - MER5A DNA MER1_type -28 161 2 269 227 147 27 chr9 94318063 94318138 -23544489 - MER5B DNA MER1_type -10 168 85 2211 119 3 0 chr9 94318629 94318924 -23543703 - AluSp SINE Alu -17 296 1 180 302 0 19 chr9 94318999 94319052 -23543575 - MIR3 SINE MIR -19 189 138 433 311 33 7 chr9 94319086 94319237 -23543390 + MIR3 SINE MIR 29 183 -25 204 97 0 0 chr9 94319337 94319368 -23543259 + (A)n Simple_repeat Simple_repeat 1 31 0 3266 146 35 52 chr9 94319537 94319603 -23543024 - L1MA9 LINE L1 0 6312 6246 2187 127 0 6 chr9 94319603 94319917 -23542710 - AluSx SINE Alu 0 312 1 3266 146 35 52 chr9 94319917 94320384 -23542243 - L1MA9 LINE L1 -66 6246 5772 201 74 0 0 chr9 94320384 94320411 -23542216 + (TA)n Simple_repeat Simple_repeat 2 28 0 3266 146 35 52 chr9 94320411 94320457 -23542170 - L1MA9 LINE L1 -540 5772 5741 2117 106 7 20 chr9 94320457 94320760 -23541867 - AluSp SINE Alu -14 299 1 3266 146 35 52 chr9 94320760 94320815 -23541812 - L1MA9 LINE L1 -571 5741 5687 182 338 0 44 chr9 94321284 94321352 -23541275 - MER5B DNA MER1_type -23 155 91 335 246 205 0 chr9 94321697 94321812 -23540815 - LTR16C LTR ERVL 0 491 352 1766 201 8 36 chr9 94321812 94322204 -23540423 - MSTB1 LTR MaLR 0 432 52 248 307 0 40 chr9 94322193 94322268 -23540359 - LTR16C LTR ERVL -129 362 291 * 881 172 121 40 chr9 94322283 94322481 -23540146 + MER20 DNA MER1_type 1 214 -5 415 323 36 26 chr9 94322474 94322666 -23539961 - LTR16C LTR ERVL -199 292 99 * 677 261 60 47 chr9 94322909 94323089 -23539538 + MIR SINE MIR 5 190 -72 282 56 0 0 chr9 94323089 94323125 -23539502 + (TG)n Simple_repeat Simple_repeat 1 36 0 677 261 60 47 chr9 94323125 94323178 -23539449 + MIR SINE MIR 190 241 -21 489 141 26 0 chr9 94323621 94323699 -23538928 + MADE1 DNA Mariner 1 80 0 244 348 112 12 chr9 94323707 94323868 -23538759 - MER5B DNA MER1_type 0 178 2 198 338 100 0 chr9 94323889 94323969 -23538658 + L2 LINE L2 3173 3260 -12 2454 73 7 0 chr9 94324268 94324570 -23538057 + AluSg SINE Alu 2 305 -5 1959 116 49 7 chr9 94324695 94324980 -23537647 - AluSx SINE Alu -15 297 1 426 306 92 45 chr9 94325047 94325556 -23537071 + L1M4 LINE L1 2235 2767 -3379 613 202 0 0 chr9 94325572 94325691 -23536936 + MER33 DNA MER1_type 2 120 -204 22832 120 19 83 chr9 94325700 94326104 -23536523 + L1P3 LINE L1 5 434 -6027 306 0 0 0 chr9 94326104 94326138 -23536489 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 22832 120 19 83 chr9 94326138 94328208 -23534419 + L1P3 LINE L1 434 2405 -4056 4495 41 8 0 chr9 94328208 94328717 -23533910 + L1PA4 LINE L1 5637 6154 -1 22832 120 19 83 chr9 94328717 94330531 -23532096 + L1P3 LINE L1 2405 4334 -2127 353 276 63 58 chr9 94330651 94330870 -23531757 - MIR SINE MIR -16 246 28 2629 117 11 11 chr9 94331253 94331628 -23530999 - THE1C LTR MaLR 0 375 1 10765 120 30 37 chr9 94331628 94333219 -23529408 - THE1C-int LTR MaLR 0 1580 1 2446 126 21 13 chr9 94333219 94333591 -23529036 - THE1C LTR MaLR 0 375 1 217 280 140 10 chr9 94333753 94333853 -23528774 - L2 LINE L2 -4 3268 3156 198 297 16 0 chr9 94334338 94334402 -23528225 - L2 LINE L2 -4 3268 3204 237 176 20 20 chr9 94334442 94334493 -23528134 + GA-rich Low_complexity Low_complexity 2 52 0 2102 289 106 89 chr9 94334508 94334898 -23527729 - L2 LINE L2 -592 2722 2340 1689 146 6 119 chr9 94334898 94335226 -23527401 - AluSx SINE Alu -11 291 1 2102 289 106 89 chr9 94335226 94335303 -23527324 - L2 LINE L2 -974 2340 2266 2594 124 5 16 chr9 94335303 94335682 -23526945 + THE1C LTR MaLR 1 375 0 2102 289 106 89 chr9 94335682 94337707 -23524920 - L2 LINE L2 -1048 2266 189 605 291 58 54 chr9 94338129 94338511 -23524116 + L1MC/D LINE L1 5424 5812 -309 2483 76 0 3 chr9 94338680 94338984 -23523643 + AluY SINE Alu 1 303 -8 2204 108 0 9 chr9 94339349 94339664 -23522963 + AluSx SINE Alu 1 312 0 1606 250 71 34 chr9 94340069 94341007 -23521620 - L1ME LINE L1 -457 5705 4722 1694 127 11 124 chr9 94341010 94341365 -23521262 - MER50 LTR ERV1 -23 711 397 1279 98 47 142 chr9 94341359 94341633 -23520994 - MER50 LTR ERV1 -486 248 1 * 2008 231 60 19 chr9 94341633 94342021 -23520606 - L1ME LINE L1 -1425 4721 4292 1802 132 39 4 chr9 94342021 94342301 -23520326 + L1PA15 LINE L1 5873 6162 -3 2008 231 60 19 chr9 94342301 94342593 -23520034 - L1ME LINE L1 -1854 4292 4013 23 33 0 0 chr9 94343135 94343165 -23519462 + AT_rich Low_complexity Low_complexity 1 30 0 217 279 0 0 chr9 94343239 94343300 -23519327 + CT-rich Low_complexity Low_complexity 4 64 0 392 281 12 43 chr9 94343541 94343705 -23518922 + MIR SINE MIR 104 262 0 449 214 105 88 chr9 94344466 94344704 -23517923 - LTR37A LTR ERV1 -184 242 1 15400 157 31 3 chr9 94344911 94347418 -23515209 + L1 LINE L1 14 2590 -4975 1215 210 45 17 chr9 94347413 94347628 -23514999 + L1 LINE L1 5605 5832 -1733 * 246 32 0 0 chr9 94347628 94347659 -23514968 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 1215 210 45 17 chr9 94347659 94347734 -23514893 + L1 LINE L1 5832 5903 -1662 4391 92 10 10 chr9 94347742 94348340 -23514287 + L1MA1 LINE L1 5705 6302 0 2079 118 3 40 chr9 94348652 94348974 -23513653 - AluSq SINE Alu -3 310 1 727 226 68 0 chr9 94349588 94349734 -23512893 - MER58A DNA MER1_type 0 158 3 191 273 36 0 chr9 94349905 94349960 -23512667 - L2 LINE L2 -1 3312 3256 519 260 88 48 chr9 94350813 94351063 -23511564 + MIR SINE MIR 2 261 -1 199 294 0 0 chr9 94351530 94351581 -23511046 - L2 LINE L2 -15 3257 3207 332 345 20 20 chr9 94351987 94352135 -23510492 - MIR3 SINE MIR -55 153 6 268 275 233 0 chr9 94352485 94352605 -23510022 - MER5A DNA MER1_type -1 188 41 466 200 0 11 chr9 94352667 94352757 -23509870 - MER5B DNA MER1_type -39 139 51 936 137 101 0 chr9 94352789 94352957 -23509670 + L1MA6 LINE L1 6116 6300 0 2266 101 7 3 chr9 94353219 94353525 -23509102 - AluSp SINE Alu -6 307 1 630 337 45 64 chr9 94353668 94354137 -23508490 - L2 LINE L2 -2 3270 2811 586 278 91 46 chr9 94354184 94354331 -23508296 + MIR SINE MIR 10 174 -88 2273 105 0 3 chr9 94354331 94354626 -23508001 - AluSg SINE Alu -16 294 1 586 278 91 46 chr9 94354626 94354719 -23507908 + MIR SINE MIR 174 261 -1 21 0 0 0 chr9 94355664 94355685 -23506942 + AT_rich Low_complexity Low_complexity 1 21 0 186 209 23 0 chr9 94356036 94356079 -23506548 + L2 LINE L2 3226 3269 -3 372 242 32 64 chr9 94356276 94356417 -23506210 + L1MC/D LINE L1 5686 5815 -349 200 352 46 9 chr9 94356705 94356813 -23505814 - MIR3 SINE MIR -86 122 11 1815 152 0 0 chr9 94357024 94357288 -23505339 + AluSx SINE Alu 1 264 -48 189 0 0 0 chr9 94357359 94357380 -23505247 + (TG)n Simple_repeat Simple_repeat 1 21 0 352 333 44 38 chr9 94359077 94359162 -23503465 - MIR3 SINE MIR -21 187 104 4815 163 36 19 chr9 94359162 94359942 -23502685 - MER54B LTR ERVL 0 793 1 352 333 44 38 chr9 94359942 94360039 -23502588 - MIR3 SINE MIR -104 104 4 221 106 0 43 chr9 94361837 94361884 -23500743 + (TGGGGG)n Simple_repeat Simple_repeat 3 47 0 249 226 16 0 chr9 94361890 94361952 -23500675 - Charlie8 DNA MER1_type -17 2400 2338 28 0 0 0 chr9 94362392 94362420 -23500207 + AT_rich Low_complexity Low_complexity 1 28 0 351 314 29 35 chr9 94362489 94362661 -23499966 - MIR SINE MIR -25 237 67 768 321 0 0 chr9 94364042 94364263 -23498364 - MIR SINE MIR -4 258 38 246 270 191 8 chr9 94364357 94364573 -23498054 + L2 LINE L2 2933 3268 -4 220 298 46 53 chr9 94365089 94365240 -23497387 + L3 LINE CR1 1123 1272 -305 239 276 17 0 chr9 94365418 94365476 -23497151 + L3 LINE CR1 1387 1445 -132 538 114 13 0 chr9 94365808 94365887 -23496740 - MADE1 DNA Mariner 0 80 1 250 288 0 0 chr9 94366279 94366345 -23496282 - MIR SINE MIR -106 102 37 415 316 35 18 chr9 94366655 94366826 -23495801 - MIR3 SINE MIR -17 191 18 275 319 97 11 chr9 94367192 94367394 -23495233 + MIR SINE MIR 42 259 -3 259 95 48 95 chr9 94367799 94367862 -23494765 - HSMAR1 DNA Mariner 0 1287 1228 522 272 30 24 chr9 94368391 94368560 -23494067 + MIR SINE MIR 37 206 -56 1842 93 0 4 chr9 94368743 94368980 -23493647 - AluSc SINE Alu -40 269 34 210 281 22 104 chr9 94369297 94369432 -23493195 - MIR3 SINE MIR 0 208 85 523 289 52 22 chr9 94369980 94370205 -23492422 + MIR SINE MIR 25 259 -3 225 390 37 0 chr9 94370989 94371071 -23491556 - MIR SINE MIR -70 192 108 324 291 87 0 chr9 94371616 94371719 -23490908 - MIR3 SINE MIR 0 208 97 428 256 47 25 chr9 94371895 94372051 -23490576 + MIR SINE MIR 37 187 -60 498 188 0 0 chr9 94372107 94372187 -23490440 - MADE1 DNA Mariner 0 80 1 858 232 21 5 chr9 94373007 94373201 -23489426 + MER58A DNA MER1_type 28 224 0 297 297 101 74 chr9 94373634 94373782 -23488845 + MIR3 SINE MIR 14 165 -43 424 302 16 0 chr9 94373947 94374076 -23488551 - MIR SINE MIR -15 247 117 295 330 11 11 chr9 94374678 94374772 -23487855 - MIR SINE MIR -62 146 53 1066 182 0 0 chr9 94374778 94374943 -23487684 - AluJb SINE Alu -16 296 132 2002 114 7 0 chr9 94374950 94375223 -23487404 - AluSg SINE Alu -35 275 1 341 222 32 16 chr9 94375528 94375654 -23486973 + (TA)n Simple_repeat Simple_repeat 1 128 0 236 279 0 0 chr9 94376709 94376770 -23485857 - L2 LINE L2 -2 3270 3210 21 0 0 0 chr9 94376814 94376835 -23485792 + AT_rich Low_complexity Low_complexity 1 21 0 390 275 158 70 chr9 94376899 94376998 -23485629 - MER5A DNA MER1_type -1 188 99 2177 115 0 0 chr9 94376998 94377293 -23485334 - AluSx SINE Alu -17 295 1 390 275 158 70 chr9 94377293 94377364 -23485263 - MER5A DNA MER1_type -90 99 3 222 338 0 0 chr9 94377636 94377713 -23484914 - MIR3 SINE MIR -14 194 118 274 356 11 0 chr9 94378872 94378962 -23483665 - MIR SINE MIR -170 92 2 392 190 66 8 chr9 94379172 94379274 -23483353 - MER5A DNA MER1_type -77 112 4 851 283 21 77 chr9 94379606 94379831 -23482796 + L1MC4 LINE L1 7097 7333 -709 2106 145 0 0 chr9 94379831 94380142 -23482485 - AluSx SINE Alu -1 311 1 851 283 21 77 chr9 94380142 94380435 -23482192 + L1MC4 LINE L1 7333 7586 -456 519 168 210 8 chr9 94380462 94380581 -23482046 - MER5A DNA MER1_type 0 189 47 438 258 215 34 chr9 94380683 94380981 -23481646 + L1MC4 LINE L1 7690 8041 -1 866 183 7 7 chr9 94381343 94381496 -23481131 - LTR32 LTR ERVL -2 469 317 2031 161 24 6 chr9 94381552 94381887 -23480740 - LTR32 LTR ERVL -119 352 12 22 56 0 0 chr9 94381995 94382031 -23480596 + AT_rich Low_complexity Low_complexity 1 36 0 493 244 122 44 chr9 94382031 94382236 -23480391 + LTR68 LTR ERV1 220 440 -300 1740 51 9 5 chr9 94382557 94382773 -23479854 + AluY SINE Alu 86 302 -9 452 251 39 73 chr9 94382879 94383155 -23479472 + L1MC4a LINE L1 5769 6034 -87 202 125 68 11 chr9 94383234 94383322 -23479305 + (TATAA)n Simple_repeat Simple_repeat 3 95 0 333 182 15 45 chr9 94383333 94383465 -23479162 + (TATAA)n Simple_repeat Simple_repeat 1 128 0 280 228 139 79 chr9 94383544 94383645 -23478982 + L2 LINE L2 3193 3299 -14 221 307 23 11 chr9 94384640 94384728 -23477899 + MIR SINE MIR 58 146 -62 259 87 67 39 chr9 94386199 94386303 -23476324 + (TA)n Simple_repeat Simple_repeat 1 107 0 22 0 0 0 chr9 94386314 94386336 -23476291 + AT_rich Low_complexity Low_complexity 1 22 0 330 87 0 0 chr9 94386927 94386973 -23475654 + (TG)n Simple_repeat Simple_repeat 1 46 0 301 183 58 25 chr9 94387445 94387565 -23475062 + (TG)n Simple_repeat Simple_repeat 1 124 0 301 105 84 0 chr9 94387583 94387678 -23474949 + (TG)n Simple_repeat Simple_repeat 1 103 0 368 312 70 33 chr9 94387687 94387902 -23474725 - MIR SINE MIR -17 245 23 216 191 0 0 chr9 94389169 94389211 -23473416 + L2 LINE L2 2720 2761 -553 195 338 28 14 chr9 94389538 94389609 -23473018 - MIR3 SINE MIR -32 176 105 2112 116 7 26 chr9 94389679 94389989 -23472638 - AluSg SINE Alu -6 304 1 441 214 107 57 chr9 94390755 94390914 -23471713 + MER5A DNA MER1_type 23 189 0 229 322 92 11 chr9 94390959 94391046 -23471581 - MIR SINE MIR -92 170 77 363 44 0 0 chr9 94391203 94391248 -23471379 - MADE1 DNA Mariner 0 80 36 862 288 28 0 chr9 94391546 94391761 -23470866 + MER58A DNA MER1_type 4 224 0 3381 170 8 6 chr9 94391847 94392555 -23470072 + L1MA4A LINE L1 5508 6278 -25 542 63 13 0 chr9 94392795 94392874 -23469753 + (TCTA)n Simple_repeat Simple_repeat 3 82 0 330 304 120 16 chr9 94393578 94393703 -23468924 - L2 LINE L2 -24 3289 3152 371 346 76 5 chr9 94394262 94394447 -23468180 - MIR SINE MIR 0 262 65 961 202 16 27 chr9 94394485 94394673 -23467954 - AluJo SINE Alu -126 186 1 189 0 0 0 chr9 94395025 94395046 -23467581 + (T)n Simple_repeat Simple_repeat 1 21 0 195 129 0 0 chr9 94395327 94395358 -23467269 + (GA)n Simple_repeat Simple_repeat 2 32 0 792 135 0 53 chr9 94396366 94396499 -23466128 - AluJ SINE Alu -5 307 182 966 202 16 27 chr9 94396718 94396906 -23465721 - AluJ SINE Alu -126 186 1 2070 115 19 6 chr9 94397062 94397384 -23465243 - HSMAR2 DNA Mariner -976 326 1 25 0 0 0 chr9 94397692 94397717 -23464910 + AT_rich Low_complexity Low_complexity 1 25 0 414 247 180 27 chr9 94398315 94398465 -23464162 - MER5A DNA MER1_type -7 182 10 23 0 0 0 chr9 94398987 94399010 -23463617 + AT_rich Low_complexity Low_complexity 1 23 0 231 256 58 12 chr9 94399063 94399149 -23463478 + MLT1J LTR MaLR 83 172 -339 402 229 7 111 chr9 94399339 94399483 -23463144 + MER94 DNA DNA 6 134 0 266 345 101 0 chr9 94399672 94399791 -23462836 - MIR3 SINE MIR -75 133 3 345 201 2 72 chr9 94399795 94399907 -23462720 - MLT1J2 LTR MaLR 0 450 340 437 234 53 83 chr9 94399942 94400001 -23462626 - MLT1J1 LTR MaLR -243 207 148 477 84 0 0 chr9 94400001 94400072 -23462555 + (TA)n Simple_repeat Simple_repeat 1 71 0 437 234 53 83 chr9 94400072 94400205 -23462422 - MLT1J1 LTR MaLR -302 148 21 2177 166 11 37 chr9 94400342 94400554 -23462073 - MLT1A2 LTR MaLR -4 370 171 2894 12 0 3 chr9 94400554 94400873 -23461754 - AluYb8 SINE Alu 0 318 1 2177 166 11 37 chr9 94400873 94401040 -23461587 - MLT1A2 LTR MaLR -203 171 1 307 277 75 11 chr9 94401287 94401381 -23461246 - L2 LINE L2 -1 3271 3172 214 384 23 0 chr9 94401527 94401613 -23461014 - L2 LINE L2 -195 3077 2990 363 228 0 73 chr9 94401655 94401731 -23460896 - MIR SINE MIR -12 250 185 1436 102 117 0 chr9 94401731 94401937 -23460690 + MER30 DNA MER1_type 1 230 0 363 228 0 73 chr9 94401937 94401983 -23460644 - MIR SINE MIR -77 185 137 328 303 101 37 chr9 94402841 94403029 -23459598 - L2 LINE L2 0 3313 3114 856 273 189 22 chr9 94403083 94403527 -23459100 + LTR33 LTR ERVL 1 518 -3 290 356 46 23 chr9 94403538 94403757 -23458870 - L2 LINE L2 -225 3047 2824 224 358 0 12 chr9 94403837 94403918 -23458709 - L2 LINE L2 -211 3061 2982 2162 114 0 22 chr9 94404671 94404987 -23457640 + AluSc SINE Alu 1 309 0 181 278 0 0 chr9 94405383 94405419 -23457208 + L2 LINE L2 3257 3292 -21 1571 99 80 0 chr9 94405505 94405718 -23456909 - MER30 DNA MER1_type 0 230 1 1082 105 4 8 chr9 94405969 94406220 -23456407 + (TTTC)n Simple_repeat Simple_repeat 1 250 0 2357 102 0 0 chr9 94406224 94406529 -23456098 - AluSx SINE Alu -7 305 1 190 189 0 0 chr9 94406682 94406719 -23455908 - L2 LINE L2 -4 3309 3273 273 305 69 35 chr9 94406720 94406758 -23455869 - MIR SINE MIR -13 249 214 2027 128 0 3 chr9 94406758 94407048 -23455579 - AluSx SINE Alu -23 289 1 273 305 69 35 chr9 94407048 94407183 -23455444 - MIR SINE MIR -48 214 70 343 175 32 16 chr9 94407188 94407251 -23455376 + MER81 DNA DNA 1 64 -50 271 293 104 9 chr9 94407262 94407368 -23455259 + MIR SINE MIR 25 140 -68 510 281 55 21 chr9 94407701 94407939 -23454688 - L2 LINE L2 -179 3093 2848 606 298 31 0 chr9 94408060 94408251 -23454376 - MIR SINE MIR -17 245 49 1743 181 58 112 chr9 94408850 94409403 -23453224 + Charlie1b DNA MER1_type 1 523 0 416 296 75 24 chr9 94410592 94410805 -23451822 + L2 LINE L2 2915 3138 -175 1989 250 87 65 chr9 94410852 94411349 -23451278 - HAL1 LINE L1 -33 2474 1990 1121 197 0 67 chr9 94411349 94411588 -23451039 - MER58A DNA MER1_type 0 224 2 1989 250 87 65 chr9 94411588 94412167 -23450460 - HAL1 LINE L1 -517 1990 1374 1906 168 3 3 chr9 94412668 94412965 -23449662 - AluSx SINE Alu -15 297 1 248 256 156 11 chr9 94413003 94413093 -23449534 + L2 LINE L2 3164 3266 -6 1682 179 14 3 chr9 94413499 94413796 -23448831 + AluJb SINE Alu 3 302 -10 188 340 64 7 chr9 94413799 94413940 -23448687 - L2 LINE L2 -888 2426 2278 258 333 88 9 chr9 94413990 94414104 -23448523 - MIR3 SINE MIR -77 131 9 291 294 39 0 chr9 94415180 94415282 -23447345 + MIR SINE MIR 47 152 -110 408 20 0 0 chr9 94415290 94415339 -23447288 + (CA)n Simple_repeat Simple_repeat 2 50 0 232 152 65 0 chr9 94415652 94415698 -23446929 + GA-rich Low_complexity Low_complexity 4 52 0 365 360 66 0 chr9 94415910 94416046 -23446581 - L2 LINE L2 -5 3267 3123 448 281 138 14 chr9 94416124 94416341 -23446286 + MIR SINE MIR 1 244 -18 875 214 62 0 chr9 94417094 94417272 -23445355 - MER5A DNA MER1_type 0 189 1 1420 294 75 30 chr9 94417599 94418208 -23444419 + HAL1 LINE L1 3 639 -1868 1086 104 0 0 chr9 94418736 94418880 -23443747 - AluSq SINE Alu -17 296 153 4664 63 28 3 chr9 94418880 94419886 -23442741 - MER11A LTR ERVK 0 1266 1 233 170 0 43 chr9 94419886 94419930 -23442697 - AluSq SINE Alu -144 157 116 710 205 0 0 chr9 94419939 94420056 -23442571 - FLAM_C SINE Alu -16 117 1 556 262 40 157 chr9 94420524 94421023 -23441604 - L1M LINE L1 -744 5402 5080 1132 283 84 46 chr9 94421023 94421525 -23441102 - LTR33A LTR ERVL 0 523 3 556 262 40 157 chr9 94421525 94421935 -23440692 - L1M LINE L1 -1066 5080 4623 474 287 98 0 chr9 94422031 94422174 -23440453 - MLT1I LTR MaLR -250 159 3 451 156 22 22 chr9 94422487 94422577 -23440050 + L1MB8 LINE L1 5638 5727 -457 520 80 0 53 chr9 94422601 94422687 -23439940 + L1MB8 LINE L1 5858 5947 -231 404 73 0 0 chr9 94422687 94422742 -23439885 + L1MB8 LINE L1 6124 6178 0 520 80 0 53 chr9 94422742 94422756 -23439871 + L1MB8 LINE L1 5947 6178 0 23 0 0 0 chr9 94423088 94423111 -23439516 + AT_rich Low_complexity Low_complexity 1 23 0 941 148 0 0 chr9 94423146 94423288 -23439339 + FLAM_C SINE Alu 1 142 -1 245 228 59 40 chr9 94423293 94423394 -23439233 - L1ME4a LINE L1 -38 6083 5981 2351 95 0 0 chr9 94423588 94423883 -23438744 - AluSc SINE Alu -14 295 1 351 377 22 16 chr9 94424086 94424157 -23438470 - MIR SINE MIR -42 220 151 5325 116 23 22 chr9 94424157 94424935 -23437692 + MER4E LTR ERV1 1 779 0 351 377 22 16 chr9 94424935 94425046 -23437581 - MIR SINE MIR -111 151 37 259 296 143 10 chr9 94425337 94425435 -23437192 + MIR3 SINE MIR 88 198 -10 264 267 78 9 chr9 94425598 94425714 -23436913 + L2 LINE L2 3148 3271 -1 1053 283 73 38 chr9 94425722 94426199 -23436428 + MLT1J LTR MaLR 5 498 -13 1814 175 13 0 chr9 94426222 94426530 -23436097 + AluJo SINE Alu 1 312 0 2672 236 61 22 chr9 94426979 94428669 -23433958 + L1MDa LINE L1 1564 3331 -3209 431 184 19 19 chr9 94428711 94428814 -23433813 - L1M4 LINE L1 -3130 3016 2914 2298 311 42 8 chr9 94428819 94429654 -23432973 + HERV16 LTR ERVL 2270 3015 -1981 600 302 30 60 chr9 94429671 94430002 -23432625 + HERV16 LTR ERVL 3307 3627 -2137 1084 159 11 0 chr9 94430407 94430583 -23432044 - LTR38 LTR ERV1 -6 550 373 8367 34 7 0 chr9 94430583 94431569 -23431058 - L1PA4 LINE L1 -1727 4419 3427 8224 40 6 0 chr9 94431569 94433280 -23429347 + L1PA4 LINE L1 4439 6155 0 2351 120 34 26 chr9 94433280 94433663 -23428964 - LTR38 LTR ERV1 -170 386 1 310 256 44 0 chr9 94433860 94433950 -23428677 + L1ME4a LINE L1 5731 5824 -297 1624 187 10 17 chr9 94433998 94434287 -23428340 - AluJo SINE Alu -25 287 1 365 290 76 23 chr9 94434443 94434705 -23427922 + L1ME4a LINE L1 5835 6110 -11 308 322 111 17 chr9 94435045 94435225 -23427402 + L3 LINE CR1 1116 1312 -265 1920 191 3 17 chr9 94435967 94436324 -23426303 - MLT1A1 LTR MaLR 0 365 14 218 354 110 8 chr9 94436606 94436733 -23425894 + MER91A DNA MER1_type 11 150 -46 1829 219 21 21 chr9 94436792 94437166 -23425461 + MLT1A2 LTR MaLR 1 374 0 257 318 78 23 chr9 94437843 94437972 -23424655 + MIR3 SINE MIR 38 173 -35 231 306 72 9 chr9 94438000 94438111 -23424516 - MLT1J LTR MaLR -58 453 336 733 254 5 53 chr9 94438164 94438373 -23424254 - MLT1J LTR MaLR -312 199 1 1054 201 128 21 chr9 94438520 94438808 -23423819 - MER33 DNA MER1_type 0 324 6 339 275 11 11 chr9 94439068 94439159 -23423468 + MIR SINE MIR 52 142 -120 875 290 49 3 chr9 94439629 94439957 -23422670 + L1ME4a LINE L1 5517 5859 -262 753 250 21 31 chr9 94440155 94440347 -23422280 - MER20 DNA MER1_type 0 219 30 439 150 18 106 chr9 94440423 94440536 -23422091 + MER110A LTR ERV1 81 183 -285 236 290 21 0 chr9 94440619 94440712 -23421915 + MER110 LTR ERV1 177 271 -220 282 248 152 0 chr9 94440754 94440859 -23421768 + MER110 LTR ERV1 367 487 -4 2127 101 0 4 chr9 94440876 94441184 -23421443 - AluSg SINE Alu 0 311 5 233 106 0 43 chr9 94441469 94441516 -23421111 + (CATA)n Simple_repeat Simple_repeat 2 46 0 375 289 40 64 chr9 94442051 94442224 -23420403 + MIR SINE MIR 48 216 -46 208 264 110 11 chr9 94442780 94442871 -23419756 - MIR SINE MIR -161 101 2 191 222 69 56 chr9 94443679 94443751 -23418876 + L2 LINE L2 2636 2708 -606 2721 116 103 2 chr9 94443810 94444217 -23418410 - MER83 LTR ERV1 0 448 1 2048 116 7 10 chr9 94444664 94444966 -23417661 + AluSx SINE Alu 1 301 -11 320 345 108 36 chr9 94445483 94445790 -23416837 + L2 LINE L2 2907 3235 -37 236 300 69 46 chr9 94445936 94446066 -23416561 + MIR3 SINE MIR 3 135 -73 198 0 0 0 chr9 94446825 94446847 -23415780 + (TTCA)n Simple_repeat Simple_repeat 3 24 0 218 288 51 0 chr9 94446854 94446913 -23415714 - L2 LINE L2 -14 3258 3197 212 163 47 0 chr9 94446916 94446959 -23415668 + (TAGA)n Simple_repeat Simple_repeat 1 45 0 235 266 47 0 chr9 94447117 94447181 -23415446 - L2 LINE L2 -192 3080 3014 231 36 0 0 chr9 94447588 94447616 -23415011 + (TG)n Simple_repeat Simple_repeat 1 28 0 231 146 0 0 chr9 94448014 94448069 -23414558 + (T)n Simple_repeat Simple_repeat 1 55 0 317 370 37 15 chr9 94448230 94448365 -23414262 + L2 LINE L2 3124 3261 -11 1764 93 4 17 chr9 94448555 94448791 -23413836 - AluSp SINE Alu -80 233 1 364 274 32 11 chr9 94448920 94449015 -23413612 - MIR SINE MIR -150 112 16 190 256 103 83 chr9 94449251 94449407 -23413220 + L2 LINE L2 2906 3064 -208 262 261 0 0 chr9 94449537 94449602 -23413025 + MIR SINE MIR 57 121 -141 287 315 37 0 chr9 94450032 94450140 -23412487 + MIR SINE MIR 34 145 -63 29 0 0 0 chr9 94450603 94450632 -23411995 + AT_rich Low_complexity Low_complexity 1 29 0 353 274 24 79 chr9 94451086 94451338 -23411289 - MER113 DNA MER1_type? -135 386 149 689 214 19 13 chr9 94451341 94451500 -23411127 - MER104 DNA Tc2 -1 179 20 309 286 151 16 chr9 94451666 94451792 -23410835 - MIR SINE MIR -76 186 44 1777 181 13 19 chr9 94452162 94452471 -23410156 - AluSx SINE Alu -5 307 1 324 281 165 7 chr9 94452484 94452619 -23410008 - MIR SINE MIR -56 206 53 4573 155 42 30 chr9 94452640 94453530 -23409097 - L1MD1 LINE L1 0 6242 5343 7144 138 58 8 chr9 94453530 94454701 -23407926 + Tigger3b DNA MER2_type 2 1231 0 326 129 86 0 chr9 94454745 94454815 -23407812 - L1MD2 LINE L1 0 6359 6284 3986 188 62 13 chr9 94454815 94455651 -23406976 + L1MB8 LINE L1 5290 6166 -12 1028 212 4 52 chr9 94455673 94455923 -23406704 - L1MD2 LINE L1 -56 6303 6066 4742 66 41 2 chr9 94457096 94457702 -23404925 - L1PA10 LINE L1 -11 6157 5528 22 35 0 0 chr9 94457757 94457786 -23404841 + AT_rich Low_complexity Low_complexity 1 29 0 383 126 13 5 chr9 94458025 94458102 -23404525 - MLT2B1 LTR ERVL -1 519 369 1990 168 49 3 chr9 94458132 94458507 -23404120 - MLT2D LTR ERVL -20 444 1 1730 144 29 45 chr9 94459333 94459646 -23402981 - AluJo SINE Alu -4 308 1 336 319 74 25 chr9 94460435 94460598 -23402029 - L1ME LINE L1 -370 5800 5630 276 362 43 0 chr9 94460653 94460747 -23401880 + L2 LINE L2 3125 3222 -50 250 302 138 26 chr9 94460929 94460971 -23401656 - MIR3 SINE MIR -65 143 107 1614 123 0 63 chr9 94460971 94461224 -23401403 + AluSx SINE Alu 38 274 -38 250 302 138 26 chr9 94461224 94461297 -23401330 - MIR3 SINE MIR -101 107 15 207 261 87 0 chr9 94461506 94461575 -23401052 - MIR3 SINE MIR -6 202 128 366 267 155 6 chr9 94461912 94462073 -23400554 - MLT1J2 LTR MaLR 0 450 266 213 195 26 91 chr9 94462219 94462296 -23400331 + MIR SINE MIR 104 175 -87 388 221 107 15 chr9 94462765 94462896 -23399731 + MIR SINE MIR 117 259 -3 264 210 174 58 chr9 94463321 94463459 -23399168 - LTR16C LTR ERVL -23 468 315 247 277 46 0 chr9 94463776 94463841 -23398786 + L2 LINE L2 3011 3078 -235 2386 96 0 10 chr9 94464005 94464318 -23398309 + AluSx SINE Alu 3 312 0 644 247 6 6 chr9 94465397 94465563 -23397064 + MIR SINE MIR 97 262 0 431 344 52 16 chr9 94466372 94466564 -23396063 - MIR SINE MIR -13 249 51 443 346 34 14 chr9 94467511 94467719 -23394908 - L3 LINE CR1 -150 1427 1216 198 254 102 0 chr9 94467916 94467975 -23394652 - L2 LINE L2 -15 3298 3234 190 262 168 19 chr9 94468809 94468916 -23393711 + MIR SINE MIR 22 144 -64 546 267 176 43 chr9 94469002 94469614 -23393013 - L2 LINE L2 -4 3309 2642 228 287 139 16 chr9 94470446 94470575 -23392052 - MIR SINE MIR -70 192 48 296 263 0 12 chr9 94470761 94470841 -23391786 + MIR SINE MIR 61 139 -69 2369 93 7 0 chr9 94470885 94471185 -23391442 - AluSx SINE Alu -10 302 1 612 340 105 38 chr9 94471893 94472604 -23390023 + L2 LINE L2 2508 3267 -5 270 291 218 60 chr9 94473027 94473261 -23389366 + L2 LINE L2 3042 3312 -1 356 329 93 19 chr9 94473316 94473532 -23389095 + MIR SINE MIR 20 251 -11 485 302 107 51 chr9 94473558 94474084 -23388543 - LTR67 LTR ERVL -1 556 2 429 328 98 31 chr9 94474244 94474601 -23388026 - LTR33 LTR ERVL -130 391 11 219 265 0 0 chr9 94475425 94475474 -23387153 + L3 LINE CR1 1426 1474 -103 354 373 22 8 chr9 94475685 94475819 -23386808 + MIR SINE MIR 20 155 -107 * 760 256 99 5 chr9 94475812 94476023 -23386604 - MIR SINE MIR -1 261 31 1882 135 0 40 chr9 94476175 94476479 -23386148 - AluJo SINE Alu -3 309 18 183 80 0 0 chr9 94476773 94476798 -23385829 + (CAT)n Simple_repeat Simple_repeat 3 27 0 207 0 0 0 chr9 94477427 94477450 -23385177 + (GA)n Simple_repeat Simple_repeat 2 24 0 241 274 82 0 chr9 94478031 94478104 -23384523 + MIR SINE MIR 178 256 -6 240 320 39 0 chr9 94478548 94478651 -23383976 - MIR SINE MIR -83 125 19 199 242 40 111 chr9 94479208 94479307 -23383320 + MER5B DNA MER1_type 68 159 -19 312 219 176 42 chr9 94479594 94479713 -23382914 + MIR SINE MIR 17 151 -57 345 285 51 15 chr9 94480476 94480613 -23382014 + MIR SINE MIR 2 143 -119 387 317 67 6 chr9 94481757 94481937 -23380690 + MIR SINE MIR 66 256 -6 247 254 69 31 chr9 94482030 94482160 -23380467 + L3 LINE CR1 1400 1534 -43 340 165 35 87 chr9 94482168 94482283 -23380344 + MER5A DNA MER1_type 9 117 -72 2026 142 3 0 chr9 94482944 94482995 -23379632 + AluSx SINE Alu 3 52 -260 185 35 69 0 chr9 94482995 94483024 -23379603 + G-rich Low_complexity Low_complexity 51 81 0 2026 142 3 0 chr9 94483024 94483274 -23379353 + AluSx SINE Alu 52 305 -7 2085 121 0 0 chr9 94483450 94483758 -23378869 + AluSx SINE Alu 1 308 0 2883 118 88 4 chr9 94484038 94484502 -23378125 + MER84 LTR ERV1 1 503 -4 2051 120 37 51 chr9 94484722 94485073 -23377554 + MER4C LTR ERV1 1 346 -119 312 27 0 0 chr9 94485073 94485110 -23377517 + (A)n Simple_repeat Simple_repeat 1 37 0 892 164 0 87 chr9 94485136 94485319 -23377308 + MER4C LTR ERV1 299 465 0 299 336 28 76 chr9 94485669 94485809 -23376818 + MIR SINE MIR 20 144 -118 962 143 51 6 chr9 94485809 94485984 -23376643 + L1MC1 LINE L1 6145 6327 -6 299 336 28 76 chr9 94485984 94486093 -23376534 + MIR SINE MIR 144 257 -5 184 250 19 0 chr9 94486218 94486270 -23376357 - L2 LINE L2 0 3272 3220 301 368 36 10 chr9 94487317 94487510 -23375117 - MIR SINE MIR -30 232 35 818 126 14 28 chr9 94488178 94488321 -23374306 + MLT2D LTR ERVL 1 141 -273 187 350 12 12 chr9 94488527 94488607 -23374020 - L2 LINE L2 -553 2761 2682 377 271 84 18 chr9 94488650 94488816 -23373811 - MER5B DNA MER1_type 0 178 2 208 372 9 9 chr9 94489234 94489347 -23373280 - MIR SINE MIR -75 133 21 452 267 7 7 chr9 94489624 94489759 -23372868 - MIR3 SINE MIR -1 207 73 587 312 69 71 chr9 94489814 94490391 -23372236 + HAL1 LINE L1 4 579 -1928 865 254 65 67 chr9 94490411 94490841 -23371786 + HAL1 LINE L1 710 1138 -1369 183 188 0 0 chr9 94491117 94491149 -23371478 + MER5B DNA MER1_type 1 32 -146 340 233 241 9 chr9 94491535 94491651 -23370976 + MIR3 SINE MIR 29 171 -37 604 200 9 0 chr9 94492964 94493074 -23369553 + MER81 DNA DNA 4 114 0 194 0 39 0 chr9 94493649 94493675 -23368952 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2114 125 3 0 chr9 94493678 94493966 -23368661 - AluSx SINE Alu -23 289 1 22 0 0 0 chr9 94494198 94494220 -23368407 + AT_rich Low_complexity Low_complexity 1 22 0 305 246 175 24 chr9 94494631 94494757 -23367870 + MIR SINE MIR 9 153 -109 2264 115 0 6 chr9 94494955 94495269 -23367358 - AluSx SINE Alu 0 312 1 222 228 187 32 chr9 94495775 94495898 -23366729 - MIR3 SINE MIR -63 145 4 486 234 222 12 chr9 94496316 94496487 -23366140 + MIR SINE MIR 20 226 -36 235 384 105 6 chr9 94496646 94496818 -23365809 - MIR SINE MIR -54 208 20 273 287 99 30 chr9 94497781 94497882 -23364745 - L3 LINE CR1 -83 1494 1387 593 283 22 0 chr9 94499590 94499770 -23362857 + MIR SINE MIR 68 251 -11 212 0 36 0 chr9 94499876 94499904 -23362723 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 195 331 125 7 chr9 94500047 94500183 -23362444 - MIR SINE MIR -26 236 85 306 106 0 0 chr9 94500524 94500571 -23362056 + (CA)n Simple_repeat Simple_repeat 2 48 0 401 298 35 14 chr9 94501192 94501333 -23361294 + MIR3 SINE MIR 65 208 0 1684 170 0 50 chr9 94501464 94501821 -23360806 - AluJb SINE Alu 0 342 1 180 158 0 0 chr9 94502143 94502181 -23360446 + (AGATG)n Simple_repeat Simple_repeat 2 39 0 484 284 118 5 chr9 94502263 94502474 -23360153 - MIR SINE MIR -3 259 25 561 181 107 13 chr9 94503610 94503759 -23358868 - MER103 DNA DNA -3 163 1 445 283 72 18 chr9 94504834 94505000 -23357627 - MIR SINE MIR -63 199 25 359 303 70 49 chr9 94505496 94505681 -23356946 - MIR SINE MIR -54 208 20 183 80 0 0 chr9 94505771 94505796 -23356831 + (T)n Simple_repeat Simple_repeat 1 25 0 246 351 91 25 chr9 94506850 94507092 -23355535 - MIR SINE MIR -3 259 2 310 265 20 20 chr9 94507468 94507566 -23355061 - MIR SINE MIR -91 117 20 261 83 0 0 chr9 94507655 94507691 -23354936 + (T)n Simple_repeat Simple_repeat 1 36 0 339 74 41 0 chr9 94508116 94508170 -23354457 + L1MA7 LINE L1 5736 5791 -380 275 150 17 0 chr9 94508174 94508234 -23354393 + (TA)n Simple_repeat Simple_repeat 1 61 0 2837 130 42 24 chr9 94508237 94508615 -23354012 + L1MA7 LINE L1 5783 6174 -117 333 0 0 0 chr9 94508615 94508652 -23353975 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 2837 130 42 24 chr9 94508652 94508773 -23353854 + L1MA7 LINE L1 6174 6291 0 22 0 0 0 chr9 94509360 94509382 -23353245 + AT_rich Low_complexity Low_complexity 1 22 0 475 237 51 32 chr9 94509550 94509706 -23352921 - MER103 DNA DNA 0 166 8 645 318 41 12 chr9 94516444 94516689 -23345938 + MIR SINE MIR 5 256 -6 354 315 54 0 chr9 94518285 94518434 -23344193 - MIR SINE MIR -16 246 90 1998 149 0 7 chr9 94518444 94518740 -23343887 + AluJo SINE Alu 5 298 -14 260 247 0 32 chr9 94518750 94518843 -23343784 - L1MC4 LINE L1 -1339 6703 6614 * 290 221 35 0 chr9 94518764 94518850 -23343777 + L1MC4 LINE L1 6614 6702 -1340 216 276 17 0 chr9 94520520 94520578 -23342049 + MER91 DNA MER1_type 3 61 -79 2288 110 0 0 chr9 94521229 94521530 -23341097 + AluSx SINE Alu 1 301 -11 1944 123 0 0 chr9 94521772 94522040 -23340587 + AluSx SINE Alu 38 305 -7 1546 237 9 12 chr9 94522733 94523066 -23339561 + MER58B DNA MER1_type 1 332 -9 21 36 0 0 chr9 94523595 94523623 -23339004 + AT_rich Low_complexity Low_complexity 1 28 0 343 350 73 14 chr9 94524759 94524979 -23337648 + L2 LINE L2 2818 3050 -222 249 256 128 0 chr9 94525140 94525218 -23337409 + L2 LINE L2 3226 3313 0 262 169 31 0 chr9 94525508 94525573 -23337054 + GA-rich Low_complexity Low_complexity 2 68 0 213 207 0 35 chr9 94525884 94525942 -23336685 + (GGGTG)n Simple_repeat Simple_repeat 3 58 0 1275 89 0 0 chr9 94525942 94526121 -23336506 + (TCCC)n Simple_repeat Simple_repeat 1 179 0 249 33 0 0 chr9 94526121 94526151 -23336476 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 581 330 66 29 chr9 94526300 94526805 -23335822 - L2 LINE L2 -15 3298 2776 330 272 33 0 chr9 94527969 94528061 -23334566 + GA-rich Low_complexity Low_complexity 6 100 0 898 254 119 57 chr9 94528307 94528744 -23333883 + MLT1J LTR MaLR 3 466 -45 301 273 45 58 chr9 94530216 94530370 -23332257 + MIR SINE MIR 37 188 -74 2940 182 20 40 chr9 94530380 94530523 -23332104 + L1MD2 LINE L1 5779 5923 -436 1782 171 108 27 chr9 94530523 94530857 -23331770 + MLT1A1 LTR MaLR 1 361 -4 2940 182 20 40 chr9 94530857 94531306 -23331321 + L1MD2 LINE L1 5923 6359 0 2249 97 0 0 chr9 94531789 94532088 -23330539 + AluSc SINE Alu 1 299 0 2054 116 3 17 chr9 94533181 94533348 -23329279 - AluSc SINE Alu -11 298 135 2358 62 20 7 chr9 94533348 94533640 -23328987 - AluY SINE Alu -15 296 1 2054 116 3 17 chr9 94533640 94533774 -23328853 - AluSc SINE Alu -174 135 1 240 235 84 127 chr9 94534601 94534767 -23327860 + MIR SINE MIR 75 233 -29 202 307 26 111 chr9 94535062 94535332 -23327295 + L2 LINE L2 2853 3099 -173 347 348 90 7 chr9 94535930 94536085 -23326542 - MIR SINE MIR -75 187 20 1004 114 0 0 chr9 94536263 94536395 -23326232 + AluSq/x SINE Alu 1 132 -180 2021 106 53 3 chr9 94536914 94537196 -23325431 + AluSx SINE Alu 1 296 -16 445 255 99 7 chr9 94537548 94537689 -23324938 + MLT1H LTR MaLR 6 159 -390 349 285 112 6 chr9 94537722 94537961 -23324666 + MLT1H LTR MaLR 248 546 -3 249 325 36 12 chr9 94538304 94538387 -23324240 - L2 LINE L2 -2 3270 3186 327 278 90 42 chr9 94538443 94538587 -23324040 - MIR3 SINE MIR -9 199 49 436 306 48 48 chr9 94539326 94539555 -23323072 + MIR SINE MIR 22 250 -12 795 248 22 78 chr9 94539701 94539886 -23322741 + MIR SINE MIR 7 174 -88 2223 123 3 0 chr9 94539886 94540187 -23322440 - AluSx SINE Alu -10 302 1 795 248 22 78 chr9 94540187 94540271 -23322356 + MIR SINE MIR 174 261 -1 259 308 164 19 chr9 94541111 94541270 -23321357 - MIR3 SINE MIR -23 185 4 243 354 0 0 chr9 94541429 94541494 -23321133 - L2 LINE L2 -5 3267 3203 337 262 31 112 chr9 94541857 94542039 -23320588 + MIR SINE MIR 37 207 -55 271 264 56 80 chr9 94543903 94543948 -23318679 + L2 LINE L2 3148 3193 -79 2404 84 0 6 chr9 94543948 94544259 -23318368 - AluY SINE Alu -2 309 1 271 264 56 80 chr9 94544259 94544338 -23318289 + L2 LINE L2 3193 3269 -3 232 368 0 0 chr9 94544339 94544434 -23318193 + MIR SINE MIR 57 151 -111 1500 199 42 3 chr9 94544993 94545304 -23317323 + MER33 DNA MER1_type 2 324 0 396 274 72 97 chr9 94545691 94545735 -23316892 + MIR SINE MIR 21 65 -197 246 32 0 0 chr9 94545735 94545766 -23316861 + (TC)n Simple_repeat Simple_repeat 2 32 0 2162 117 3 0 chr9 94545766 94546056 -23316571 - AluSq SINE Alu -22 291 1 396 274 72 97 chr9 94546056 94546247 -23316380 + MIR SINE MIR 63 251 -11 278 280 33 23 chr9 94546351 94546459 -23316168 + MIR3 SINE MIR 65 157 -51 314 235 48 72 chr9 94546519 94546685 -23315942 + MER103 DNA DNA 3 164 -2 191 309 117 0 chr9 94547678 94547772 -23314855 + MIR SINE MIR 49 153 -109 316 278 52 43 chr9 94547974 94548089 -23314538 + MIR SINE MIR 13 128 -134 1932 146 0 35 chr9 94548826 94549141 -23313486 - AluSx SINE Alu -8 304 1 267 37 37 37 chr9 94549553 94549607 -23313020 + (CAAAAA)n Simple_repeat Simple_repeat 1 54 0 433 325 124 5 chr9 94550245 94550454 -23312173 + MIR SINE MIR 29 262 0 415 366 94 7 chr9 94550563 94550839 -23311788 + L3b LINE CR1 1116 1415 -168 313 301 77 96 chr9 94550888 94551073 -23311554 + L3 LINE CR1 1134 1312 -265 501 47 0 0 chr9 94551073 94551137 -23311490 + (TG)n Simple_repeat Simple_repeat 1 64 0 313 301 77 96 chr9 94551137 94551263 -23311364 + L3 LINE CR1 1312 1439 -138 348 322 77 34 chr9 94551280 94551513 -23311114 + MIR SINE MIR 6 248 -14 276 100 0 0 chr9 94551695 94551735 -23310892 + (TATATG)n Simple_repeat Simple_repeat 4 43 0 238 75 0 0 chr9 94551736 94551776 -23310851 - LTR66 LTR ERVL -172 438 399 213 235 0 0 chr9 94551809 94551894 -23310733 + (TATAA)n Simple_repeat Simple_repeat 5 89 0 776 236 40 0 chr9 94552354 94552528 -23310099 - MER3 DNA MER1_type -28 181 1 467 260 54 70 chr9 94553182 94553424 -23309203 + MIR SINE MIR 20 257 -5 216 0 0 0 chr9 94554994 94555018 -23307609 + (T)n Simple_repeat Simple_repeat 1 24 0 237 353 13 33 chr9 94555256 94555409 -23307218 - L2 LINE L2 0 3272 3123 321 279 0 0 chr9 94555531 94555610 -23307017 - MER116 DNA Mariner 0 80 2 352 248 48 76 chr9 94555611 94555756 -23306871 + MIR SINE MIR 78 218 -44 317 246 67 37 chr9 94556388 94556522 -23306105 - MER117 DNA MER1_type -54 143 6 1439 106 20 63 chr9 94556710 94556965 -23305662 + L1MA9 LINE L1 6069 6312 0 214 398 26 9 chr9 94557136 94557249 -23305378 - L2 LINE L2 -4 3268 3154 2225 118 0 3 chr9 94557276 94557573 -23305054 - AluSx SINE Alu -16 296 1 656 276 57 24 chr9 94558033 94558279 -23304348 - MIR SINE MIR -5 257 4 339 306 25 25 chr9 94558815 94558936 -23303691 + L2 LINE L2 3151 3271 -1 335 343 30 0 chr9 94559116 94559215 -23303412 - L2 LINE L2 -1 3271 3170 336 171 61 49 chr9 94559595 94559677 -23302950 + MIR SINE MIR 63 145 -63 211 279 195 30 chr9 94560554 94560738 -23301889 + MIR SINE MIR 37 255 -7 512 294 37 6 chr9 94560877 94561040 -23301587 + MER117 DNA MER1_type 25 192 -5 561 319 81 0 chr9 94561376 94561586 -23301041 - MIR SINE MIR 0 262 36 448 240 33 16 chr9 94561884 94562005 -23300622 + MER103 DNA DNA 38 160 -6 320 319 152 21 chr9 94562225 94562416 -23300211 - MIR SINE MIR -42 220 5 936 202 22 0 chr9 94563245 94563423 -23299204 - MER58A DNA MER1_type -1 223 42 337 282 102 102 chr9 94563523 94563778 -23298849 - MIR SINE MIR -6 256 2 294 237 26 0 chr9 94564357 94564433 -23298194 + MER103 DNA DNA 2 79 -87 262 301 0 0 chr9 94564438 94564521 -23298106 + L2 LINE L2 2723 2805 -509 * 353 262 86 48 chr9 94564496 94564706 -23297921 + L2 LINE L2 2972 3189 -124 1173 172 13 5 chr9 94564710 94565024 -23297603 + MLT1A1 LTR MaLR 1 365 0 282 295 13 0 chr9 94565026 94565104 -23297523 + L2 LINE L2 3188 3266 -47 240 279 44 0 chr9 94565116 94565184 -23297443 + MER103 DNA DNA 95 165 -1 566 281 104 13 chr9 94565302 94565533 -23297094 - MIR SINE MIR 0 262 11 230 384 113 13 chr9 94566170 94566329 -23296298 - L2 LINE L2 -232 3040 2866 1712 66 56 0 chr9 94566939 94567152 -23295475 - AluY SINE Alu -12 299 75 2006 248 87 37 chr9 94567251 94567459 -23295168 + MLT1E LTR MaLR 1 197 -396 2268 103 0 10 chr9 94567459 94567769 -23294858 - AluSq SINE Alu -4 309 3 2006 248 87 37 chr9 94567769 94568124 -23294503 + MLT1E LTR MaLR 197 592 -1 370 296 28 9 chr9 94568259 94568367 -23294260 + MIR SINE MIR 37 146 -62 219 211 0 0 chr9 94569059 94569097 -23293530 - L2 LINE L2 -95 3218 3181 256 360 59 18 chr9 94569340 94569511 -23293116 + MIR SINE MIR 30 214 -48 341 341 72 6 chr9 94570768 94570949 -23291678 + MIR3 SINE MIR 2 192 -70 278 296 65 18 chr9 94571441 94571586 -23291041 + MIR SINE MIR 31 179 -83 472 289 34 0 chr9 94572084 94572233 -23290394 - MIR SINE MIR -12 250 97 386 263 147 13 chr9 94573100 94573256 -23289371 - MIR SINE MIR -67 195 19 230 325 51 32 chr9 94575321 94575478 -23287149 - MIR SINE MIR -32 230 71 283 280 21 21 chr9 94575757 94575850 -23286777 + MIR3 SINE MIR 112 204 -4 321 340 113 14 chr9 94576815 94576956 -23285671 + L2 LINE L2 3117 3271 -1 241 336 93 0 chr9 94577015 94577122 -23285505 - MIR3 SINE MIR -6 202 86 229 284 25 25 chr9 94578021 94578102 -23284525 + MIR SINE MIR 50 130 -78 202 307 91 23 chr9 94578637 94578725 -23283902 + L2 LINE L2 3111 3204 -68 190 313 0 71 chr9 94578925 94579024 -23283603 + MIR SINE MIR 123 214 -48 709 307 22 0 chr9 94579601 94579826 -23282801 - MIR SINE MIR 0 262 33 412 269 47 74 chr9 94580036 94580252 -23282375 + MIR SINE MIR 47 254 -8 264 274 71 12 chr9 94580265 94580349 -23282278 + MIR3 SINE MIR 93 181 -27 285 98 0 0 chr9 94580525 94580566 -23282061 + (CA)n Simple_repeat Simple_repeat 2 42 0 311 282 0 0 chr9 94581085 94581163 -23281464 - MIR SINE MIR -115 147 70 272 290 49 37 chr9 94581264 94581432 -23281195 + MIR SINE MIR 3 171 -60 1865 204 125 22 chr9 94581447 94581903 -23280724 + MLT1D LTR MaLR 3 505 0 2234 107 54 3 chr9 94581968 94582304 -23280323 + L1MA2 LINE L1 5950 6302 -2 196 267 17 17 chr9 94582767 94582827 -23279800 - MIR SINE MIR -56 152 93 362 188 0 0 chr9 94583664 94583733 -23278894 + MER116 DNA Mariner 12 80 0 616 255 106 5 chr9 94584237 94584430 -23278197 - MIR SINE MIR -14 248 39 2699 81 10 65 chr9 94584476 94584678 -23277949 - THE1B LTR MaLR 0 364 191 2259 113 0 0 chr9 94584678 94584979 -23277648 - AluY SINE Alu -10 301 1 2699 81 10 65 chr9 94584979 94585161 -23277466 - THE1B LTR MaLR -173 191 1 224 167 21 0 chr9 94585189 94585237 -23277390 + GA-rich Low_complexity Low_complexity 4 52 0 264 268 12 37 chr9 94585319 94585401 -23277226 - L2 LINE L2 -43 3270 3191 895 235 36 0 chr9 94585403 94585599 -23277028 + MER20 DNA MER1_type 1 203 -16 296 229 0 0 chr9 94586615 94586676 -23275951 + L2 LINE L2 3249 3309 -4 1318 84 0 0 chr9 94587044 94587211 -23275416 + AluY SINE Alu 142 308 -3 259 306 35 0 chr9 94587428 94587513 -23275114 - L2 LINE L2 -4 3309 3222 406 311 54 6 chr9 94587626 94587793 -23274834 - MIR SINE MIR -71 191 17 625 266 82 5 chr9 94588183 94588398 -23274229 + MIR SINE MIR 33 261 -1 1218 131 18 54 chr9 94588594 94588816 -23273811 + MER20 DNA MER1_type 6 219 0 2023 171 48 8 chr9 94589372 94589723 -23272904 - MLT1A1 LTR MaLR 0 365 1 365 311 79 13 chr9 94589749 94589977 -23272650 - MIR SINE MIR -13 249 7 261 364 139 23 chr9 94590238 94590584 -23272043 - L2 LINE L2 -40 3232 2847 274 315 49 14 chr9 94591467 94591589 -23271038 - MIR SINE MIR -9 253 124 822 183 8 0 chr9 94591589 94591720 -23270907 + FLAM_A SINE Alu 2 133 0 274 315 49 14 chr9 94591720 94591740 -23270887 - MIR SINE MIR -138 124 106 471 35 0 0 chr9 94592296 94592353 -23270274 + (TG)n Simple_repeat Simple_repeat 2 58 0 596 346 68 30 chr9 94592824 94593604 -23269023 - L2 LINE L2 0 3272 2467 408 325 69 0 chr9 94593921 94594081 -23268546 + MIR SINE MIR 6 176 -86 2286 152 43 0 chr9 94594426 94594774 -23267853 + MLT1A1 LTR MaLR 3 365 0 335 315 131 74 chr9 94594791 94595226 -23267401 + L2 LINE L2 2809 3268 -4 3134 219 66 19 chr9 94595816 94596774 -23265853 - Charlie2 DNA MER1_type -18 2844 1842 702 259 235 8 chr9 94596772 94597027 -23265600 - Charlie2 DNA MER1_type -2548 314 2 * 234 226 38 0 chr9 94597242 94597295 -23265332 - MIR3 SINE MIR 0 208 154 372 355 26 0 chr9 94597298 94597487 -23265140 + MER117 DNA MER1_type 3 196 -1 736 298 23 27 chr9 94598258 94598520 -23264107 - L1MC/D LINE L1 -2070 5738 5478 379 315 37 0 chr9 94599305 94599413 -23263214 + L2 LINE L2 3202 3313 0 361 303 90 0 chr9 94599459 94599581 -23263046 - MIR SINE MIR -73 189 57 705 153 21 25 chr9 94600027 94600271 -23262356 + CT-rich Low_complexity Low_complexity 1 243 0 239 56 83 0 chr9 94600375 94600411 -23262216 + CT-rich Low_complexity Low_complexity 2 40 0 624 162 16 43 chr9 94600417 94600602 -23262025 + C-rich Low_complexity Low_complexity 1 180 0 289 223 21 11 chr9 94600628 94600722 -23261905 + CT-rich Low_complexity Low_complexity 2 96 0 281 355 41 33 chr9 94601628 94601749 -23260878 - L2 LINE L2 0 3313 3192 756 135 0 0 chr9 94601769 94601880 -23260747 - Tigger5 DNA MER2_type 0 2323 2213 406 216 47 94 chr9 94601881 94602052 -23260575 - MIR SINE MIR -37 225 63 256 297 119 17 chr9 94603312 94603430 -23259197 - MIR SINE MIR -109 153 24 494 292 105 18 chr9 94603510 94603681 -23258946 - MIR3 SINE MIR -5 203 18 252 325 39 118 chr9 94603886 94604089 -23258538 - L2 LINE L2 -49 3223 3037 645 326 120 21 chr9 94604127 94604510 -23258117 - L2 LINE L2 -1 3312 2892 1010 117 43 0 chr9 94604514 94604711 -23257916 + AluYb8 SINE Alu 150 353 0 231 357 75 41 chr9 94605468 94605762 -23256865 + L2 LINE L2 1791 2094 -1220 318 115 0 0 chr9 94606377 94606429 -23256198 + (TA)n Simple_repeat Simple_repeat 2 53 0 954 196 22 0 chr9 94607259 94607438 -23255189 + MER5A DNA MER1_type 6 188 -1 307 254 225 14 chr9 94607833 94607971 -23254656 - MIR3 SINE MIR -18 190 24 764 313 36 8 chr9 94608639 94608888 -23253739 - MIR SINE MIR -6 256 1 2331 97 6 10 chr9 94608939 94609250 -23253377 - AluSg SINE Alu 0 310 1 185 212 0 0 chr9 94609860 94609893 -23252734 - MIR SINE MIR -209 53 21 315 240 50 40 chr9 94610018 94610118 -23252509 - MLT1L LTR MaLR -1 614 514 1077 261 75 24 chr9 94610778 94611112 -23251515 - MLT1I LTR MaLR -4 405 55 310 271 63 62 chr9 94611972 94611987 -23250640 + MIR SINE MIR 23 36 -212 2235 123 0 0 chr9 94611987 94612289 -23250338 + AluSg SINE Alu 1 302 -8 310 271 63 62 chr9 94612289 94612443 -23250184 + MIR SINE MIR 36 192 -56 300 278 165 0 chr9 94612733 94612866 -23249761 + L2 LINE L2 2599 2753 -561 260 307 89 111 chr9 94613064 94613334 -23249293 + L2 LINE L2 2923 3186 -86 207 227 152 15 chr9 94613423 94613489 -23249138 + L2 LINE L2 3239 3313 0 1655 190 7 3 chr9 94613724 94614029 -23248598 - AluJo SINE Alu -6 306 1 186 271 0 0 chr9 94614130 94614178 -23248449 + MIR SINE MIR 107 154 -108 1238 119 0 11 chr9 94614449 94614625 -23248002 - AluSg/x SINE Alu -5 305 132 2314 98 0 10 chr9 94614625 94614931 -23247696 - AluSx SINE Alu -9 303 1 414 312 75 27 chr9 94615714 94615900 -23246727 + MIR SINE MIR 50 244 -18 396 324 62 29 chr9 94615927 94616151 -23246476 - MIR SINE MIR -6 256 16 215 317 69 20 chr9 94616229 94616330 -23246297 - L2 LINE L2 0 3272 3167 266 305 97 84 chr9 94616353 94616480 -23246147 + L2 LINE L2 3034 3167 -105 2152 129 0 0 chr9 94616480 94616767 -23245860 - AluSx SINE Alu -25 287 1 266 305 97 84 chr9 94616767 94616865 -23245762 + L2 LINE L2 3167 3262 -10 1724 187 32 40 chr9 94617174 94617548 -23245079 + MLT1A2 LTR MaLR 4 374 0 189 0 0 0 chr9 94618152 94618173 -23244454 + (TA)n Simple_repeat Simple_repeat 2 22 0 876 152 41 0 chr9 94618173 94618318 -23244309 - AluSg/x SINE Alu -25 285 135 581 299 108 50 chr9 94618966 94619131 -23243496 - L2 LINE L2 -3 3310 3156 1914 137 78 28 chr9 94619131 94619488 -23243139 + THE1C LTR MaLR 1 375 0 581 299 108 50 chr9 94619488 94620013 -23242614 - L2 LINE L2 -157 3156 2584 2443 68 7 7 chr9 94620038 94620347 -23242280 + AluY SINE Alu 1 309 -2 570 240 89 49 chr9 94621310 94621556 -23241071 + MER112 DNA MER1_type 1 256 -4 501 214 166 14 chr9 94621636 94621781 -23240846 - MLT1I LTR MaLR 0 409 243 849 210 49 6 chr9 94621888 94622050 -23240577 + MER45A DNA AcHobo 1 169 -9 274 263 50 0 chr9 94622066 94622146 -23240481 + MIR SINE MIR 108 191 -71 222 340 31 10 chr9 94622272 94622369 -23240258 + L2 LINE L2 2967 3065 -207 212 317 95 52 chr9 94622465 94622835 -23239792 + L2 LINE L2 2593 2977 -336 2164 124 0 0 chr9 94622837 94623136 -23239491 + AluSx SINE Alu 6 304 -8 860 287 39 32 chr9 94623734 94623833 -23238794 - MLT1I LTR MaLR -30 379 282 1708 171 17 13 chr9 94623833 94624131 -23238496 - AluJb SINE Alu -10 302 4 860 287 39 32 chr9 94624131 94624313 -23238314 - MLT1I LTR MaLR -127 282 96 1330 198 204 0 chr9 94626060 94626115 -23236512 - MLT1D LTR MaLR 0 505 463 228 86 0 0 chr9 94626115 94626150 -23236477 + (CA)n Simple_repeat Simple_repeat 2 36 0 1330 198 204 0 chr9 94626150 94626253 -23236374 - MLT1D LTR MaLR -42 463 382 234 62 0 0 chr9 94626253 94626285 -23236342 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1330 198 204 0 chr9 94626285 94626478 -23236149 - MLT1D LTR MaLR -123 382 81 243 0 0 0 chr9 94626478 94626505 -23236122 + (T)n Simple_repeat Simple_repeat 1 27 0 238 321 160 0 chr9 94626626 94626732 -23235895 - MIR SINE MIR -17 245 123 258 350 24 32 chr9 94627221 94627344 -23235283 + MIR SINE MIR 20 141 -67 451 267 133 0 chr9 94627492 94627627 -23235000 + MIR SINE MIR 2 154 -108 494 257 22 61 chr9 94627752 94627961 -23234666 + MIR SINE MIR 42 241 -21 326 343 94 6 chr9 94628690 94628871 -23233756 - MIR SINE MIR -17 245 49 623 302 150 8 chr9 94629774 94630148 -23232479 - L1ME3A LINE L1 -294 5876 5450 773 316 26 61 chr9 94630246 94630774 -23231853 - L1ME3A LINE L1 -754 5392 4883 2708 85 95 5 chr9 94630809 94631220 -23231407 - LTR7 LTR ERV1 -2 448 1 2209 101 48 13 chr9 94631220 94631597 -23231030 - HERVH LTR ERV1 0 7713 7324 1271 131 28 0 chr9 94631597 94631811 -23230816 - HERVH LTR ERV1 -1894 5819 5600 3919 160 1 1 chr9 94631812 94632474 -23230153 - HERVH LTR ERV1 -2564 5149 4488 1859 122 9 6 chr9 94632476 94632795 -23229832 - HERVH LTR ERV1 -3720 3993 3674 12379 88 37 25 chr9 94632899 94634851 -23227776 - HERVH LTR ERV1 -5738 1975 1 2374 102 99 5 chr9 94634859 94635263 -23227364 - LTR7 LTR ERV1 -8 442 1 461 304 138 28 chr9 94635272 94635699 -23226928 - L1ME3A LINE L1 -1310 4836 4363 277 328 57 0 chr9 94635762 94636002 -23226625 - L1ME3A LINE L1 -1854 4292 4038 462 283 64 86 chr9 94636012 94636199 -23226428 + MIR SINE MIR 6 188 -74 261 210 0 0 chr9 94636200 94636262 -23226365 + (TA)n Simple_repeat Simple_repeat 2 63 0 238 239 0 0 chr9 94636266 94636312 -23226315 + MIR SINE MIR 207 252 -10 303 316 0 7 chr9 94636328 94636480 -23226147 - L1ME3A LINE L1 -2113 4033 3883 3830 138 21 0 chr9 94637113 94637735 -23224892 + MER41B LTR ERV1 1 635 0 22 56 0 0 chr9 94637813 94637849 -23224778 + AT_rich Low_complexity Low_complexity 1 36 0 2505 135 45 15 chr9 94637865 94638386 -23224241 - MER4B LTR ERV1 0 779 78 2172 145 4 67 chr9 94638486 94638947 -23223680 + MER4B LTR ERV1 174 605 -5 1898 243 100 50 chr9 94639522 94640288 -23222339 - L1ME3A LINE L1 -14 6156 5306 1756 169 110 3 chr9 94640288 94640625 -23222002 - MER83C LTR ERV1 0 373 1 1898 243 100 50 chr9 94640625 94641066 -23221561 - L1ME3A LINE L1 -864 5306 4889 319 64 0 0 chr9 94641230 94641277 -23221350 - MADE1 DNA Mariner -33 47 1 1211 70 45 30 chr9 94641277 94641452 -23221175 - L1MA4 LINE L1 -341 5959 5779 324 0 0 0 chr9 94641452 94641488 -23221139 + (TA)n Simple_repeat Simple_repeat 2 37 0 1211 70 45 30 chr9 94641488 94641512 -23221115 - L1MA4 LINE L1 -521 5779 5757 1736 120 14 7 chr9 94641535 94641819 -23220808 - L1MA1 LINE L1 0 6302 6017 1911 153 7 10 chr9 94641836 94642143 -23220484 - AluSq SINE Alu -7 306 1 235 277 12 12 chr9 94642824 94642907 -23219720 + HsTC2 DNA Tc2 47 129 -1769 2181 107 0 35 chr9 94642936 94643253 -23219374 - AluSg SINE Alu -4 306 1 1379 209 123 6 chr9 94643426 94643794 -23218833 + MSTD LTR MaLR 1 396 0 1944 162 0 10 chr9 94643846 94644160 -23218467 - AluSx SINE Alu -1 311 1 4224 115 28 17 chr9 94644176 94645027 -23217600 - L1MA4 LINE L1 -317 5983 5121 4815 169 28 25 chr9 94645027 94646130 -23216497 + L1MA4 LINE L1 4014 5119 -1027 203 181 0 86 chr9 94646223 94646328 -23216299 + T-rich Low_complexity Low_complexity 5 100 0 181 415 100 31 chr9 94647180 94647561 -23215066 + L2 LINE L2 2866 3272 0 26 30 0 0 chr9 94648280 94648313 -23214314 + AT_rich Low_complexity Low_complexity 1 33 0 229 262 43 128 chr9 94648690 94648854 -23213773 + MIR3 SINE MIR 8 157 -51 405 340 4 30 chr9 94648943 94649175 -23213452 - Charlie8 DNA MER1_type -2188 229 4 358 252 44 68 chr9 94649532 94649569 -23213058 + MER113 DNA MER1_type? 1 37 -484 2292 198 103 6 chr9 94649569 94650063 -23212564 + MLT1F LTR MaLR 1 542 0 358 252 44 68 chr9 94650063 94650231 -23212396 + MER113 DNA MER1_type? 37 201 -320 25 31 0 0 chr9 94650261 94650293 -23212334 + AT_rich Low_complexity Low_complexity 1 32 0 3079 183 9 52 chr9 94650293 94651047 -23211580 - L1MA9 LINE L1 -38 6274 5553 326 215 17 14 chr9 94651058 94651241 -23211386 + MER113 DNA MER1_type? 239 470 -51 340 326 44 30 chr9 94651537 94651672 -23210955 - MIR3 SINE MIR -61 147 11 300 70 0 0 chr9 94651993 94652036 -23210591 + (CA)n Simple_repeat Simple_repeat 1 43 0 218 228 0 35 chr9 94654139 94654196 -23208431 - MIR SINE MIR -128 134 80 1238 136 0 0 chr9 94654196 94654373 -23208254 + AluSq SINE Alu 135 311 -2 571 37 24 0 chr9 94654473 94654555 -23208072 + (TCTA)n Simple_repeat Simple_repeat 3 86 0 302 306 240 8 chr9 94654557 94654799 -23207828 - L2 LINE L2 -32 3281 2984 188 35 35 0 chr9 94654904 94654933 -23207694 + (TG)n Simple_repeat Simple_repeat 2 31 0 239 348 35 104 chr9 94655792 94656166 -23206461 - L2 LINE L2 -58 3214 2867 260 203 0 51 chr9 94656715 94656774 -23205853 + L2 LINE L2 3201 3256 -16 365 367 34 0 chr9 94656912 94657119 -23205508 - MIR SINE MIR -2 260 47 221 282 26 13 chr9 94657155 94657233 -23205394 + L3 LINE CR1 1242 1320 -257 274 310 70 39 chr9 94657565 94657694 -23204933 - MIR SINE MIR -74 134 1 227 254 68 85 chr9 94658382 94658500 -23204127 - MIR3 SINE MIR -21 187 72 379 256 159 31 chr9 94658697 94658892 -23203735 - MIR SINE MIR -12 250 31 212 250 19 0 chr9 94658967 94659019 -23203608 - L2 LINE L2 0 3313 3261 219 283 50 30 chr9 94659391 94659490 -23203137 - L2 LINE L2 -498 2816 2716 700 329 93 18 chr9 94659494 94659947 -23202680 - MLT1J LTR MaLR -1 510 24 542 260 32 112 chr9 94661005 94661282 -23201345 + MIR SINE MIR 5 259 -3 1381 195 254 7 chr9 94661411 94661816 -23200811 - MLT1D LTR MaLR 0 505 1 199 309 18 0 chr9 94662527 94662582 -23200045 + MIR SINE MIR 91 146 -62 381 327 92 23 chr9 94663728 94663945 -23198682 - MIR SINE MIR -3 259 28 314 263 85 52 chr9 94664074 94664259 -23198368 - MIR SINE MIR -11 251 63 791 247 25 42 chr9 94664276 94664515 -23198112 - MIR SINE MIR -20 242 8 383 296 73 41 chr9 94665509 94665729 -23196898 - MIR SINE MIR -32 230 4 310 290 74 80 chr9 94666043 94666066 -23196561 - L2 LINE L2 -1 3271 3249 1539 222 135 22 chr9 94666066 94666097 -23196530 + MLT1H LTR MaLR 3 29 -520 279 0 0 0 chr9 94666097 94666128 -23196499 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1539 222 135 22 chr9 94666128 94666586 -23196041 + MLT1H LTR MaLR 29 547 -2 310 290 74 80 chr9 94666586 94666724 -23195903 - L2 LINE L2 -23 3249 3111 349 329 68 0 chr9 94667202 94667348 -23195279 + MIR SINE MIR 35 190 -72 1020 310 54 28 chr9 94668145 94668532 -23194095 + L2 LINE L2 2917 3313 0 444 262 48 28 chr9 94669335 94669480 -23193147 - MIR SINE MIR -78 184 37 406 366 72 24 chr9 94669869 94670246 -23192381 + L2 LINE L2 2483 2877 -437 2182 126 0 10 chr9 94670287 94670588 -23192039 - AluSx SINE Alu -6 306 9 269 215 96 105 chr9 94670598 94670807 -23191820 + MLT1K LTR MaLR 364 570 -18 243 308 48 110 chr9 94670825 94671117 -23191510 - L2 LINE L2 -109 3163 2890 2275 120 31 14 chr9 94671468 94671825 -23190802 + THE1B LTR MaLR 1 363 -1 355 256 80 36 chr9 94672702 94672839 -23189788 - L2 LINE L2 -2 3270 3128 1974 104 100 4 chr9 94673105 94673384 -23189243 + AluSg SINE Alu 1 306 -4 22 35 0 0 chr9 94673417 94673446 -23189181 + AT_rich Low_complexity Low_complexity 1 29 0 2179 127 3 9 chr9 94676013 94676328 -23186299 + AluSq SINE Alu 1 313 0 282 276 163 30 chr9 94676686 94676889 -23185738 + MER102a DNA MER1_type 99 328 -2 993 184 13 57 chr9 94677550 94677778 -23184849 - MER20 DNA MER1_type -1 218 1 204 339 0 0 chr9 94678289 94678354 -23184273 + GA-rich Low_complexity Low_complexity 1 65 0 303 246 239 30 chr9 94679092 94679226 -23183401 - MLT1H LTR MaLR -383 166 5 303 307 170 43 chr9 94679230 94679559 -23183068 + L1MC4a LINE L1 5579 5949 -1859 943 225 5 14 chr9 94679651 94679864 -23182763 + MER20 DNA MER1_type 3 213 -6 311 264 264 39 chr9 94679890 94680170 -23182457 + L2 LINE L2 2266 2608 -706 288 263 168 52 chr9 94680632 94680789 -23181838 + MIR SINE MIR 7 183 -63 688 357 105 17 chr9 94681047 94681697 -23180930 + L2 LINE L2 88 885 -2429 419 330 38 9 chr9 94681721 94681933 -23180694 + L2 LINE L2 1170 1387 -1927 308 331 15 15 chr9 94681943 94682079 -23180548 + L2 LINE L2 1917 2052 -1262 2026 159 37 31 chr9 94682083 94682632 -23179995 - MLT2A2 LTR ERVL -2 552 1 1272 312 111 39 chr9 94682656 94683826 -23178801 + L2 LINE L2 2067 3313 0 635 267 0 0 chr9 94684007 94684168 -23178459 - L1MB7 LINE L1 -16 6168 6008 3747 83 0 6 chr9 94684168 94684671 -23177956 - LTR3b LTR ERVK 0 500 1 1078 167 13 34 chr9 94684671 94684904 -23177723 - L1MB7 LINE L1 -161 6013 5786 574 119 18 18 chr9 94684900 94685009 -23177618 + L1MB7 LINE L1 5660 5768 -416 * 230 253 330 0 chr9 94685021 94685112 -23177515 + L2 LINE L2 3152 3272 0 210 219 0 31 chr9 94685133 94685197 -23177430 + (TAA)n Simple_repeat Simple_repeat 3 64 0 188 367 78 0 chr9 94685636 94685726 -23176901 + L2 LINE L2 3175 3271 -1 234 234 0 65 chr9 94686175 94686252 -23176375 + MIR3 SINE MIR 130 201 -7 246 284 0 0 chr9 94686741 94686822 -23175805 + CT-rich Low_complexity Low_complexity 3 83 0 * 706 196 0 17 chr9 94686802 94686981 -23175646 + C-rich Low_complexity Low_complexity 3 178 0 303 207 15 30 chr9 94686951 94687086 -23175541 + CT-rich Low_complexity Low_complexity 3 135 0 * 679 350 83 18 chr9 94687146 94687740 -23174887 + L2 LINE L2 2678 3313 0 350 352 16 16 chr9 94687781 94687909 -23174718 + L2 LINE L2 2968 3095 -177 206 263 0 62 chr9 94687945 94688025 -23174602 + MIR3 SINE MIR 131 205 -3 258 197 70 84 chr9 94688038 94688109 -23174518 + MIR SINE MIR 42 111 -97 235 311 226 5 chr9 94688413 94688612 -23174015 - MIR SINE MIR -12 250 9 302 349 18 9 chr9 94689434 94689543 -23173084 + MIR SINE MIR 21 130 -78 828 193 5 83 chr9 94689613 94689805 -23172822 - AluJo SINE Alu -14 298 122 271 295 19 19 chr9 94690368 94690473 -23172154 + L2 LINE L2 1798 1902 -1412 193 257 108 27 chr9 94690623 94690697 -23171930 + L2 LINE L2 2916 2995 -277 180 77 0 0 chr9 94691168 94691194 -23171433 + (CAA)n Simple_repeat Simple_repeat 2 27 0 323 257 142 78 chr9 94691626 94692365 -23170262 - LTR33A LTR ERVL -9 514 1 332 212 189 8 chr9 94693155 94693287 -23169340 + MIR SINE MIR 101 256 -6 222 37 0 0 chr9 94693732 94693759 -23168868 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 217 344 152 23 chr9 94694305 94694872 -23167755 - L2 LINE L2 -350 2964 2325 223 240 39 11 chr9 94694920 94695002 -23167625 + MIR SINE MIR 87 134 -74 200 279 39 58 chr9 94695739 94695843 -23166784 + L2 LINE L2 441 542 -2772 229 282 13 51 chr9 94695896 94695974 -23166653 + L2 LINE L2 3194 3268 -4 2070 125 0 13 chr9 94695989 94696302 -23166325 + AluSg SINE Alu 2 310 0 588 299 50 5 chr9 94696543 94696744 -23165883 + MIR SINE MIR 53 262 0 200 268 134 12 chr9 94696947 94697029 -23165598 + MIR SINE MIR 165 256 -6 427 257 29 0 chr9 94697029 94697134 -23165493 - MLT1K LTR MaLR -2 586 479 315 132 0 0 chr9 94697332 94697400 -23165227 + (TA)n Simple_repeat Simple_repeat 2 69 0 781 225 62 8 chr9 94697789 94697996 -23164631 - MER20 DNA MER1_type -7 212 1 373 307 74 11 chr9 94698179 94698355 -23164272 + MIR3 SINE MIR 12 198 -10 2474 105 19 11 chr9 94698531 94698903 -23163724 - THE1C LTR MaLR 0 375 1 270 252 71 71 chr9 94699279 94699406 -23163221 - MIR SINE MIR -76 132 20 626 245 203 47 chr9 94699724 94700128 -23162499 - MLT1C LTR MaLR 0 467 1 1607 146 4 0 chr9 94700250 94700490 -23162137 - AluSg/x SINE Alu -5 305 65 226 366 41 16 chr9 94700599 94700722 -23161905 + MIR3 SINE MIR 42 167 -41 201 263 0 18 chr9 94701320 94701377 -23161250 + T-rich Low_complexity Low_complexity 3 58 0 244 284 79 24 chr9 94701387 94701514 -23161113 - L2 LINE L2 -1 3271 3138 212 196 22 0 chr9 94701525 94701571 -23161056 + (CATAT)n Simple_repeat Simple_repeat 4 50 0 2725 99 12 15 chr9 94702715 94703120 -23159507 + MLT2A2 LTR ERVL 1 404 -49 257 93 41 52 chr9 94703122 94703219 -23159408 + (TA)n Simple_repeat Simple_repeat 2 97 0 349 74 19 0 chr9 94703289 94703343 -23159284 + MLT2A2 LTR ERVL 399 453 0 3449 157 30 82 chr9 94703355 94704599 -23158028 - L1MB1 LINE L1 -5 6163 4981 349 363 90 36 chr9 94704675 94705008 -23157619 + L2 LINE L2 2899 3249 -23 518 85 43 0 chr9 94705012 94705106 -23157521 + GA-rich Low_complexity Low_complexity 4 101 0 890 160 2 11 chr9 94705198 94705363 -23157264 + MLT1A1 LTR MaLR 1 141 -224 224 119 0 24 chr9 94705865 94705907 -23156720 + (TTTC)n Simple_repeat Simple_repeat 2 42 0 184 398 45 23 chr9 94707060 94707148 -23155479 + L2 LINE L2 3168 3257 -15 2081 176 3 6 chr9 94707821 94708179 -23154448 + MLT1A1 LTR MaLR 1 357 -8 524 223 46 15 chr9 94708197 94708327 -23154300 - MLT1E LTR MaLR 0 654 521 605 288 7 0 chr9 94708448 94708594 -23154033 - MLT1E LTR MaLR -142 451 305 1398 224 24 18 chr9 94709320 94709659 -23152968 - MER58B DNA MER1_type 0 341 1 1940 218 113 29 chr9 94710333 94710997 -23151630 - L1MC4 LINE L1 0 8042 7323 834 241 49 45 chr9 94711065 94711307 -23151320 - L1MC4 LINE L1 -919 7123 6878 2439 111 80 5 chr9 94711307 94711705 -23150922 - MSTA LTR MaLR 0 428 1 834 241 49 45 chr9 94711705 94711748 -23150879 - L1MC4 LINE L1 -1164 6878 6837 209 170 0 111 chr9 94711769 94711904 -23150723 + T-rich Low_complexity Low_complexity 5 124 0 252 319 50 21 chr9 94711914 94712055 -23150572 - L1MC4 LINE L1 -1233 6809 6665 248 173 19 0 chr9 94712066 94712118 -23150509 + (CAGA)n Simple_repeat Simple_repeat 4 56 0 477 215 0 0 chr9 94712119 94712268 -23150359 + (CA)n Simple_repeat Simple_repeat 1 149 0 272 230 14 0 chr9 94712341 94712415 -23150212 + MLT1L LTR MaLR 539 613 -2 22 0 0 0 chr9 94712492 94712514 -23150113 + AT_rich Low_complexity Low_complexity 1 22 0 345 277 64 58 chr9 94713459 94713647 -23148980 + L1M4 LINE L1 4142 4330 -1816 358 311 88 20 chr9 94713861 94713901 -23148726 - MIR SINE MIR -76 186 150 1860 199 7 44 chr9 94713901 94714312 -23148315 + MSTD LTR MaLR 1 396 0 358 311 88 20 chr9 94714312 94714419 -23148208 - MIR SINE MIR -112 150 29 1984 130 0 57 chr9 94714673 94714989 -23147638 + AluSx SINE Alu 3 300 -12 1736 212 36 13 chr9 94715599 94715986 -23146641 - MSTD LTR MaLR 0 396 1 2631 101 11 13 chr9 94716042 94716418 -23146209 - THE1C LTR MaLR 0 375 1 245 359 84 42 chr9 94716587 94716896 -23145731 + L2 LINE L2 2939 3260 -12 251 349 60 87 chr9 94718073 94718291 -23144336 - L2 LINE L2 -19 3253 3042 402 333 56 32 chr9 94718324 94718573 -23144054 + MIR SINE MIR 2 256 -6 230 274 27 0 chr9 94719542 94719615 -23143012 - MIR SINE MIR -16 246 172 916 267 48 44 chr9 94719682 94720117 -23142510 - MLT1J LTR MaLR -45 466 30 300 290 41 62 chr9 94720137 94720282 -23142345 - MIR SINE MIR -109 153 12 239 306 18 54 chr9 94720363 94720474 -23142153 + MER81 DNA DNA 1 107 -7 198 0 0 0 chr9 94720501 94720523 -23142104 + (A)n Simple_repeat Simple_repeat 1 22 0 405 0 0 0 chr9 94721015 94721060 -23141567 + (TC)n Simple_repeat Simple_repeat 2 46 0 276 30 0 0 chr9 94721059 94721092 -23141535 + (TG)n Simple_repeat Simple_repeat 2 34 0 * 190 385 72 6 chr9 94721219 94721385 -23141242 - L2 LINE L2 -548 2766 2590 254 197 76 15 chr9 94721453 94721519 -23141108 - LTR16C LTR ERVL -2 489 420 1374 130 68 14 chr9 94722502 94722709 -23139918 - AluJb SINE Alu -9 303 86 474 293 19 34 chr9 94723529 94723737 -23138890 + MIR SINE MIR 48 252 -10 470 347 97 5 chr9 94723910 94724126 -23138501 - MIR SINE MIR 0 262 27 5588 137 7 7 chr9 94724202 94725322 -23137305 - L1MA3 LINE L1 -101 7623 6503 5844 186 16 12 chr9 94725324 94726616 -23136011 - L1MA3 LINE L1 -1786 5779 4484 2343 93 0 0 chr9 94726628 94726928 -23135699 + AluSx SINE Alu 11 310 -2 213 250 0 0 chr9 94727039 94727099 -23135528 + (TA)n Simple_repeat Simple_repeat 1 60 0 1893 131 3 18 chr9 94727385 94727668 -23134959 - AluSg SINE Alu -31 279 1 5023 171 10 26 chr9 94727672 94728099 -23134528 - L1MA3 LINE L1 -3114 4451 4018 2310 66 3 26 chr9 94728099 94728403 -23134224 - AluY SINE Alu -14 297 1 5023 171 10 26 chr9 94728403 94729423 -23133204 - L1MA3 LINE L1 -3547 4018 3035 2273 102 0 20 chr9 94729423 94729726 -23132901 + AluSg SINE Alu 1 297 -13 5023 171 10 26 chr9 94729726 94729990 -23132637 - L1MA3 LINE L1 -4530 3035 2768 308 203 16 0 chr9 94730093 94730157 -23132470 - L1MA3 LINE L1 -6123 1442 1378 8406 160 12 14 chr9 94730157 94731636 -23130991 - L1MA3 LINE L1 -6079 1486 10 262 281 101 101 chr9 94731854 94731932 -23130695 + MIR SINE MIR 28 105 -157 1857 179 10 0 chr9 94731932 94732239 -23130388 - AluJb SINE Alu -2 310 1 262 281 101 101 chr9 94732239 94732359 -23130268 + MIR SINE MIR 104 226 -36 292 358 34 36 chr9 94733049 94733288 -23129339 + MIR SINE MIR 17 255 -7 304 314 40 32 chr9 94733305 94733429 -23129198 - L2 LINE L2 0 3272 3148 275 290 110 35 chr9 94735031 94735176 -23127451 + MIR SINE MIR 63 218 -44 24 77 0 0 chr9 94735176 94735228 -23127399 + AT_rich Low_complexity Low_complexity 1 52 0 216 0 0 0 chr9 94735690 94735714 -23126913 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1775 158 49 30 chr9 94736368 94736736 -23125891 - THE1C LTR MaLR 0 375 1 266 358 78 73 chr9 94737408 94737821 -23124806 - L2 LINE L2 -34 3238 2824 1978 106 7 4 chr9 94738098 94738400 -23124227 + AluSx SINE Alu 11 313 0 312 338 28 72 chr9 94738588 94738917 -23123710 - L2 LINE L2 -214 3058 2742 1714 186 3 13 chr9 94739307 94739614 -23123013 - AluJb SINE Alu -6 306 3 285 29 0 0 chr9 94739835 94739869 -23122758 + (TG)n Simple_repeat Simple_repeat 1 34 0 209 197 15 0 chr9 94739916 94739982 -23122645 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 21 0 0 0 chr9 94740090 94740111 -23122516 + AT_rich Low_complexity Low_complexity 1 21 0 218 258 16 0 chr9 94740771 94740833 -23121794 + MIR SINE MIR 173 235 -27 793 240 39 0 chr9 94741077 94741256 -23121371 + MIR SINE MIR 45 230 -32 1965 148 0 27 chr9 94741808 94742105 -23120522 - AluSx SINE Alu -23 289 1 1554 206 47 14 chr9 94742114 94742473 -23120154 + MLT1A2 LTR MaLR 4 374 0 2299 66 0 20 chr9 94742906 94743208 -23119419 + AluY SINE Alu 2 297 -14 180 345 11 46 chr9 94743582 94743669 -23118958 - L2 LINE L2 -2 3270 3187 368 276 158 0 chr9 94743683 94743810 -23118817 - MIR3 SINE MIR -28 180 34 441 0 0 0 chr9 94744500 94744549 -23118078 + (CA)n Simple_repeat Simple_repeat 2 50 0 252 0 0 0 chr9 94744549 94744577 -23118050 + (A)n Simple_repeat Simple_repeat 1 28 0 428 274 131 25 chr9 94744868 94745105 -23117522 + MLT1J2 LTR MaLR 70 331 -119 276 167 0 0 chr9 94745546 94745594 -23117033 + MLT1L LTR MaLR 170 217 -398 205 330 87 17 chr9 94746229 94746344 -23116283 + MIR SINE MIR 1 123 -139 619 287 40 0 chr9 94748668 94748842 -23113785 + MIR SINE MIR 1 181 -81 1776 175 13 30 chr9 94748869 94749172 -23113455 + AluJb SINE Alu 3 300 -12 231 263 105 23 chr9 94749195 94749328 -23113299 - MIR SINE MIR -27 235 92 220 325 44 18 chr9 94750481 94750595 -23112032 + MIR3 SINE MIR 82 198 -10 629 271 86 19 chr9 94751623 94751833 -23110794 - MER58A DNA MER1_type 0 224 1 365 303 46 17 chr9 94751834 94752009 -23110618 - L1ME LINE L1 -466 5655 5476 915 108 0 2 chr9 94752014 94752275 -23110352 + AluSx SINE Alu 1 309 0 374 310 90 0 chr9 94752911 94753066 -23109561 + MIR SINE MIR 21 189 -73 634 316 72 29 chr9 94753760 94754146 -23108481 - L2 LINE L2 -559 2755 2353 260 288 59 42 chr9 94754148 94754266 -23108361 + MIR SINE MIR 16 135 -73 399 283 19 9 chr9 94754311 94754417 -23108210 - MER5B DNA MER1_type -60 118 12 319 312 43 21 chr9 94755260 94755401 -23107226 + L3b LINE CR1 1154 1297 -286 301 335 120 25 chr9 94755543 94755701 -23106926 + MIR SINE MIR 20 192 -70 210 191 0 0 chr9 94755991 94756033 -23106594 + (TG)n Simple_repeat Simple_repeat 2 43 0 944 295 85 27 chr9 94756514 94757080 -23105547 - L1ME3A LINE L1 -278 5892 5300 1352 297 153 42 chr9 94757157 94758526 -23104101 - L1ME3A LINE L1 -913 5233 3729 273 57 0 0 chr9 94758704 94758739 -23103888 + MADE1 DNA Mariner 1 35 -45 24 0 0 0 chr9 94759096 94759120 -23103507 + AT_rich Low_complexity Low_complexity 1 24 0 454 346 51 17 chr9 94759123 94759360 -23103267 - MIR SINE MIR -17 245 1 199 267 131 102 chr9 94760595 94760771 -23101856 + MIR SINE MIR 21 201 -61 2335 125 22 11 chr9 94760771 94761131 -23101496 - THE1B LTR MaLR 0 364 1 445 305 58 31 chr9 94761835 94762058 -23100569 - MIR SINE MIR -11 251 23 201 147 0 0 chr9 94762694 94762728 -23099899 + (CATATA)n Simple_repeat Simple_repeat 3 36 0 9689 30 7 4 chr9 94762975 94764930 -23097697 - L1PA2 LINE L1 0 6155 4202 321 369 83 5 chr9 94765204 94765421 -23097206 - MIR SINE MIR -11 251 18 1088 164 49 18 chr9 94765424 94765649 -23096978 + Tigger1 DNA MER2_type 1 232 -2186 1326 153 0 0 chr9 94765683 94765872 -23096755 - AluSx SINE Alu -123 189 1 11299 142 32 4 chr9 94765872 94767861 -23094766 + Tigger1 DNA MER2_type 217 2260 -158 6032 98 24 3 chr9 94767861 94768809 -23093818 + L1MA1 LINE L1 5334 6301 -1 831 179 33 5 chr9 94768811 94768995 -23093632 + Tigger1 DNA MER2_type 2230 2418 0 2173 47 0 4 chr9 94769290 94769545 -23093082 - AluY SINE Alu -18 293 40 2370 99 0 3 chr9 94770087 94770390 -23092237 + AluSc SINE Alu 1 302 -7 265 219 16 23 chr9 94770492 94770620 -23092007 + CT-rich Low_complexity Low_complexity 3 129 0 1344 305 98 23 chr9 94771631 94772955 -23089672 + L1MEc LINE L1 37 1384 -4831 465 203 0 16 chr9 94773001 94773123 -23089504 + L1MEc LINE L1 1600 1715 -861 814 194 0 0 chr9 94773127 94773256 -23089371 + FLAM_C SINE Alu 1 129 -4 1454 231 78 56 chr9 94773319 94773648 -23088979 + MLT1F LTR MaLR 30 375 -167 2112 154 19 25 chr9 94773648 94774012 -23088615 + THE1B LTR MaLR 1 362 -2 1454 231 78 56 chr9 94774012 94774184 -23088443 + MLT1F LTR MaLR 375 542 0 714 252 30 89 chr9 94774208 94774645 -23087982 + L1ME1 LINE L1 3677 4081 -2065 2246 112 0 3 chr9 94774645 94774940 -23087687 - AluSq SINE Alu -19 294 1 714 252 30 89 chr9 94774940 94775010 -23087617 + L1ME1 LINE L1 4081 4154 -1992 3141 212 49 25 chr9 94775057 94776156 -23086471 + L1ME1 LINE L1 5037 6161 -5 252 365 0 0 chr9 94776249 94776334 -23086293 - L2 LINE L2 -3 3269 3185 268 377 35 42 chr9 94776648 94776932 -23085695 - L2 LINE L2 -800 2514 2233 995 333 172 34 chr9 94777173 94778243 -23084384 - L2 LINE L2 -1696 1618 401 325 302 170 6 chr9 94778446 94778605 -23084022 + MIR SINE MIR 7 191 -71 2376 101 0 0 chr9 94778627 94778935 -23083692 + AluY SINE Alu 1 308 -3 1070 216 54 8 chr9 94779984 94780225 -23082402 + MIR SINE MIR 11 262 0 186 354 12 0 chr9 94781283 94781365 -23081262 + MIR SINE MIR 48 130 -132 328 320 115 55 chr9 94782819 94783019 -23079608 - MIR SINE MIR -14 248 37 332 251 101 56 chr9 94783561 94783740 -23078887 + MLT1J2 LTR MaLR 79 265 -185 240 312 81 40 chr9 94783895 94784068 -23078559 - L2 LINE L2 -500 2814 2635 446 379 24 0 chr9 94784242 94784448 -23078179 - MIR SINE MIR -32 230 20 198 0 0 0 chr9 94784476 94784498 -23078129 + (TTGG)n Simple_repeat Simple_repeat 2 23 0 2011 132 0 0 chr9 94784501 94784781 -23077846 - AluSq SINE Alu -31 282 3 267 31 0 0 chr9 94785733 94785765 -23076862 + (ATG)n Simple_repeat Simple_repeat 2 33 0 263 200 100 0 chr9 94785900 94785970 -23076657 + MER116 DNA Mariner 4 80 0 264 311 142 44 chr9 94785987 94786271 -23076356 - L2 LINE L2 -245 3068 2759 1462 171 0 0 chr9 94786323 94786551 -23076076 - L1PB4 LINE L1 -1 6155 5928 874 176 0 0 chr9 94786551 94786699 -23075928 - L1PB4 LINE L1 -85 6071 5924 * 1315 179 0 0 chr9 94786697 94786915 -23075712 - L1PB4 LINE L1 -87 6069 5852 416 378 6 0 chr9 94786918 94787098 -23075529 - L2 LINE L2 -604 2710 2530 301 234 122 43 chr9 94788458 94788650 -23073977 - MIR SINE MIR -44 218 11 284 302 78 120 chr9 94788998 94789240 -23073387 + L2 LINE L2 3030 3261 -11 431 250 0 10 chr9 94789329 94789433 -23073194 - L1ME2 LINE L1 -16 6148 6046 343 325 68 8 chr9 94790443 94790560 -23072067 - L2 LINE L2 -5 3267 3144 336 299 68 0 chr9 94790728 94790845 -23071782 + MIR SINE MIR 18 142 -66 1547 247 83 37 chr9 94790979 94791461 -23071166 - MLT1D LTR MaLR 0 505 2 333 0 0 0 chr9 94791506 94791543 -23071084 + (TA)n Simple_repeat Simple_repeat 1 37 0 324 304 20 10 chr9 94791622 94791724 -23070903 + MIR SINE MIR 3 105 -157 1347 209 3 49 chr9 94791933 94792239 -23070388 - AluJo SINE Alu -20 292 1 203 175 0 0 chr9 94792278 94792318 -23070309 + T-rich Low_complexity Low_complexity 1 40 0 879 165 25 0 chr9 94792318 94792476 -23070151 - LTR9 LTR ERV1 -86 526 365 1860 168 28 34 chr9 94792477 94792835 -23069792 - HUERS-P3 LTR ERV1 -8388 531 176 231 165 51 38 chr9 94793028 94793107 -23069520 + CT-rich Low_complexity Low_complexity 2 81 0 315 0 0 0 chr9 94793441 94793476 -23069151 + (CA)n Simple_repeat Simple_repeat 2 36 0 260 396 42 0 chr9 94793556 94793700 -23068927 + L2 LINE L2 3118 3267 -5 2290 90 0 7 chr9 94794080 94794381 -23068246 - AluY SINE Alu -12 299 1 193 172 17 103 chr9 94794441 94794499 -23068128 - L2 LINE L2 -2 3270 3218 460 250 30 73 chr9 94795152 94795316 -23067311 + MIR SINE MIR 18 174 -88 261 83 0 0 chr9 94795358 94795394 -23067233 + (TG)n Simple_repeat Simple_repeat 1 36 0 204 158 0 0 chr9 94795394 94795432 -23067195 + GA-rich Low_complexity Low_complexity 2 39 0 443 213 10 20 chr9 94795526 94795650 -23066977 - MIR SINE MIR -63 145 36 209 103 0 0 chr9 94797516 94797545 -23065082 + (A)n Simple_repeat Simple_repeat 1 29 0 182 37 37 0 chr9 94797811 94797838 -23064789 + (TAA)n Simple_repeat Simple_repeat 3 30 0 967 247 51 48 chr9 94797838 94798271 -23064356 + HAL1b LINE L1 382 815 -533 347 233 123 46 chr9 94798280 94798301 -23064326 + HAL1b LINE L1 881 899 -449 1852 77 8 58 chr9 94798301 94798561 -23064066 - AluSg SINE Alu -63 247 1 347 233 123 46 chr9 94798561 94798758 -23063869 + HAL1b LINE L1 899 1116 -232 271 325 31 74 chr9 94799324 94799487 -23063140 + L2 LINE L2 3116 3271 -1 1626 89 0 0 chr9 94799537 94799740 -23062887 + L1PA5 LINE L1 5952 6154 0 2133 170 35 28 chr9 94800419 94800969 -23061658 + MLT2A2 LTR ERVL 1 554 0 1224 108 28 11 chr9 94801105 94801281 -23061346 - THE1B LTR MaLR -185 179 1 12028 94 2 1 chr9 94801285 94802857 -23059770 - THE1B-int LTR MaLR -5 1575 2 2333 145 19 25 chr9 94802858 94803224 -23059403 - THE1B LTR MaLR 0 364 1 516 276 69 0 chr9 94803919 94804093 -23058534 - MIR SINE MIR -12 250 65 1217 159 14 45 chr9 94804190 94804410 -23058217 + MER20 DNA MER1_type 1 213 -6 22 0 0 0 chr9 94804429 94804451 -23058176 + AT_rich Low_complexity Low_complexity 1 22 0 578 332 52 56 chr9 94805363 94805855 -23056772 + L2 LINE L2 2753 3255 -17 266 227 9 18 chr9 94805883 94805993 -23056634 + GA-rich Low_complexity Low_complexity 2 110 0 230 274 0 20 chr9 94806060 94806111 -23056516 - MIR SINE MIR -129 79 30 219 349 26 20 chr9 94806355 94806507 -23056120 - MIR SINE MIR -7 255 103 297 353 56 52 chr9 94806564 94806650 -23055977 + L2 LINE L2 2966 3050 -222 2346 86 3 10 chr9 94806650 94806953 -23055674 - L1PA7 LINE L1 0 6154 5854 297 353 56 52 chr9 94806953 94807172 -23055455 + L2 LINE L2 3050 3272 0 305 287 37 37 chr9 94807180 94807288 -23055339 - L2 LINE L2 -20 3252 3145 187 250 185 56 chr9 94807774 94807882 -23054745 - L2 LINE L2 0 3313 3192 339 261 94 14 chr9 94808271 94808409 -23054218 - MIR SINE MIR -5 257 109 9290 111 16 16 chr9 94808411 94808936 -23053691 + HSMAR1 DNA Mariner 1 525 -762 2411 64 0 0 chr9 94808936 94809220 -23053407 + AluY SINE Alu 1 287 -24 234 0 0 0 chr9 94809220 94809246 -23053381 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 2411 64 0 0 chr9 94809246 94809257 -23053370 + AluY SINE Alu 286 296 -15 9290 111 16 16 chr9 94809257 94810015 -23052612 + HSMAR1 DNA Mariner 524 1284 -3 346 341 8 8 chr9 94810213 94810339 -23052288 - MIR3 SINE MIR -38 170 45 371 364 76 9 chr9 94810444 94810669 -23051958 + MIR SINE MIR 20 259 -3 393 22 0 0 chr9 94811307 94811353 -23051274 + (TC)n Simple_repeat Simple_repeat 1 46 0 198 0 0 0 chr9 94811357 94811379 -23051248 + (TG)n Simple_repeat Simple_repeat 2 23 0 54 62 0 23 chr9 94811402 94811531 -23051096 + AT_rich Low_complexity Low_complexity 1 126 0 271 277 18 62 chr9 94811873 94811985 -23050642 - L2 LINE L2 -6 3266 3160 185 268 141 0 chr9 94812026 94812097 -23050530 + MIR SINE MIR 124 204 -58 528 276 201 0 chr9 94812113 94812225 -23050402 + MIR SINE MIR 3 91 -171 1975 128 58 76 chr9 94812225 94812607 -23050020 + THE1C LTR MaLR 1 375 0 528 276 201 0 chr9 94812607 94812708 -23049919 + MIR SINE MIR 91 259 -3 318 356 47 86 chr9 94813262 94813748 -23048879 - L2 LINE L2 0 3272 2806 596 306 36 27 chr9 94814508 94814727 -23047900 - MIR SINE MIR -3 259 39 253 274 71 48 chr9 94815262 94815430 -23047197 - MLT1K LTR MaLR -18 570 399 244 349 19 9 chr9 94815858 94815964 -23046663 - MIR SINE MIR -64 144 38 2968 140 101 35 chr9 94817051 94817544 -23045083 - MER1A DNA MER1_type 0 527 2 303 131 33 16 chr9 94817758 94817819 -23044808 + L1MB7 LINE L1 6123 6184 0 1268 195 53 7 chr9 94818036 94818338 -23044289 + MER33 DNA MER1_type 9 324 0 2213 120 3 0 chr9 94818631 94818930 -23043697 + AluSg SINE Alu 2 301 -9 548 113 0 12 chr9 94819267 94819347 -23043280 - MADE1 DNA Mariner -1 79 1 2448 67 0 29 chr9 94819406 94819721 -23042906 - AluY SINE Alu -5 306 1 21 0 0 0 chr9 94819725 94819746 -23042881 + AT_rich Low_complexity Low_complexity 1 21 0 216 320 131 0 chr9 94819870 94820023 -23042604 - MIR SINE MIR -2 260 88 763 294 86 16 chr9 94821574 94821819 -23040808 + MIR SINE MIR 1 262 0 259 329 27 20 chr9 94821935 94822081 -23040546 - MIR SINE MIR -48 214 68 * 407 306 88 58 chr9 94822061 94822355 -23040272 + L2 LINE L2 3011 3313 0 327 264 144 36 chr9 94822439 94822606 -23040021 + MIR SINE MIR 77 261 -1 242 304 124 31 chr9 94822942 94823103 -23039524 - MIR3 SINE MIR -26 182 7 583 297 54 31 chr9 94823750 94823972 -23038655 - MIR SINE MIR -12 250 24 970 206 151 88 chr9 94824471 94824894 -23037733 - MLT1J2 LTR MaLR 0 450 1 2276 115 0 0 chr9 94825012 94825324 -23037303 + AluSx SINE Alu 1 312 0 400 324 14 14 chr9 94825679 94825824 -23036803 + MER117 DNA MER1_type 11 155 -42 1505 195 23 85 chr9 94825834 94826223 -23036404 - MLT1A1 LTR MaLR 0 365 1 1973 174 169 17 chr9 94826226 94826595 -23036032 + MLT2C2 LTR ERVL 1 437 -27 399 56 0 0 chr9 94826595 94826649 -23035978 + (TG)n Simple_repeat Simple_repeat 2 55 0 1973 174 169 17 chr9 94826649 94826682 -23035945 + MLT2C2 LTR ERVL 437 464 0 966 143 0 0 chr9 94827140 94827273 -23035354 + FLAM_C SINE Alu 1 133 0 194 281 122 0 chr9 94827507 94827589 -23035038 - L2 LINE L2 -10 3262 3171 650 248 14 56 chr9 94827676 94827890 -23034737 - L2 LINE L2 0 3313 3109 377 283 118 78 chr9 94827893 94828267 -23034360 - MLT1I LTR MaLR -2 407 19 399 224 12 0 chr9 94828271 94828356 -23034271 - L2 LINE L2 -507 2807 2722 399 293 41 0 chr9 94829349 94829472 -23033155 - MER94 DNA DNA 0 134 7 2076 150 29 40 chr9 94829824 94830203 -23032424 - THE1C LTR MaLR 0 375 1 24 32 0 0 chr9 94830357 94830388 -23032239 + AT_rich Low_complexity Low_complexity 1 31 0 258 343 22 0 chr9 94831217 94831320 -23031307 + MER5A DNA MER1_type 10 103 -75 196 344 65 11 chr9 94831429 94831522 -23031105 - MIR SINE MIR -78 184 87 2494 62 0 3 chr9 94831554 94831862 -23030765 - AluY SINE Alu -4 307 1 22 35 0 0 chr9 94832017 94832046 -23030581 + AT_rich Low_complexity Low_complexity 1 29 0 354 207 378 7 chr9 94832637 94832772 -23029855 - MER5A DNA MER1_type -1 188 4 311 308 32 65 chr9 94832806 94832991 -23029636 + MIR SINE MIR 84 262 0 2653 134 368 7 chr9 94833299 94833903 -23028724 + MER52C LTR ERV1 1 822 -456 1506 128 0 0 chr9 94833903 94834106 -23028521 + AluSq SINE Alu 1 203 -110 6874 119 4 3 chr9 94834108 94835110 -23027517 - THE1A-int LTR MaLR -577 1003 1 1707 103 0 0 chr9 94835110 94835344 -23027283 - THE1A LTR MaLR 0 355 122 947 59 0 0 chr9 94885346 94885465 -22977162 - THE1A LTR MaLR -236 119 1 4825 181 100 14 chr9 94885465 94886457 -22976170 + MER52C-int LTR ERV1 2131 3207 -3884 3480 169 32 15 chr9 94886510 94887163 -22975464 + MER52C-int LTR ERV1 830 1493 -5598 631 145 23 38 chr9 94887171 94887302 -22975325 + MER52C-int LTR ERV1 1620 1748 -5789 * 1587 144 64 13 chr9 94887299 94887612 -22975015 - MER51-int LTR ERV1 -6470 1346 1018 257 89 44 0 chr9 94887625 94887670 -22974957 + MER52C-int LTR ERV1 1064 1110 -7010 1483 147 62 0 chr9 94887672 94887979 -22974648 + MER52C-int LTR ERV1 3946 4271 -3266 * 2076 174 128 18 chr9 94887969 94888800 -22973827 + MER52C-int LTR ERV1 2357 5748 -1670 401 57 0 0 chr9 94888798 94888851 -22973776 + MER52C-int LTR ERV1 5976 6028 -1177 * 1131 144 10 20 chr9 94888849 94889051 -22973576 + MER52C-int LTR ERV1 6892 7091 0 6355 153 72 35 chr9 94889052 94890282 -22972345 + MER52C LTR ERV1 2 1277 -1 366 282 80 21 chr9 94890292 94890463 -22972164 + MIR SINE MIR 61 250 -12 289 190 0 17 chr9 94890657 94890715 -22971912 - MER58 DNA MER1_type 0 2420 2364 271 159 0 95 chr9 94890714 94890777 -22971850 - MER58 DNA MER1_type -113 228 172 * 387 0 0 0 chr9 94890777 94890820 -22971807 + (TAAAA)n Simple_repeat Simple_repeat 2 44 0 373 295 25 25 chr9 94891042 94891164 -22971463 - MIR SINE MIR -56 152 31 183 80 0 0 chr9 94891674 94891699 -22970928 + (TAA)n Simple_repeat Simple_repeat 3 27 0 241 212 19 6 chr9 94891767 94891828 -22970799 - MIR SINE MIR -63 145 96 694 201 16 157 chr9 94891934 94892104 -22970523 + L1MB8 LINE L1 5908 6100 -78 1605 173 35 25 chr9 94892104 94892387 -22970240 - AluJb SINE Alu -26 286 1 694 201 16 157 chr9 94892387 94892406 -22970221 + L1MB8 LINE L1 6100 6120 -58 2348 79 0 51 chr9 94892406 94892721 -22969906 + AluY SINE Alu 1 299 -12 694 201 16 157 chr9 94892721 94892843 -22969784 + L1MB8 LINE L1 6120 6176 -2 374 395 0 0 chr9 94893248 94893377 -22969250 - L2 LINE L2 -1 3271 3143 477 273 6 31 chr9 94893791 94893952 -22968675 - MIR SINE MIR -34 228 72 * 698 339 122 11 chr9 94893949 94894391 -22968236 + L2 LINE L2 2075 2565 -749 751 221 26 91 chr9 94894405 94894745 -22967882 - MER33 DNA MER1_type -6 318 1 513 254 133 32 chr9 94894749 94895028 -22967599 + L2 LINE L2 2582 2888 -426 925 279 92 40 chr9 94895410 94895790 -22966837 + L2 LINE L2 2913 3312 -1 1943 196 32 44 chr9 94897037 94897536 -22965091 - MLT1D LTR MaLR -10 495 3 253 307 53 33 chr9 94897626 94897776 -22964851 + MER67B LTR ERV1 37 189 -472 2385 87 0 0 chr9 94897788 94898088 -22964539 - AluSc SINE Alu -9 300 1 266 278 62 35 chr9 94898203 94898347 -22964280 + MER67A LTR ERV1 395 542 -1 2332 79 0 0 chr9 94898758 94899062 -22963565 + AluY SINE Alu 1 304 -7 2442 64 0 6 chr9 94899822 94900133 -22962494 - AluY SINE Alu -2 309 1 243 369 93 40 chr9 94900291 94900950 -22961677 - L2 LINE L2 -210 3062 2376 671 264 65 0 chr9 94901975 94902160 -22960467 - MIR SINE MIR -13 249 55 430 361 157 11 chr9 94902159 94902541 -22960086 - L3 LINE CR1 -11 1566 1129 * 201 287 178 16 chr9 94902705 94902834 -22959793 + MIR SINE MIR 49 198 -64 12343 141 42 29 chr9 94902839 94903799 -22958828 + Tigger1 DNA MER2_type 11 957 -1461 2253 131 8 8 chr9 94903799 94904151 -22958476 - THE1A LTR MaLR -3 352 1 12343 141 42 29 chr9 94904151 94905103 -22957524 + Tigger1 DNA MER2_type 957 1895 -523 1473 178 10 56 chr9 94905103 94905406 -22957221 - AluJo SINE Alu -23 289 1 12343 141 42 29 chr9 94905406 94905788 -22956839 + Tigger1 DNA MER2_type 1895 2341 -77 2444 84 3 0 chr9 94905788 94906096 -22956531 + AluSp SINE Alu 1 309 -4 12343 141 42 29 chr9 94906096 94906176 -22956451 + Tigger1 DNA MER2_type 2341 2418 0 2671 257 141 36 chr9 94906248 94907307 -22955320 + L1MD1 LINE L1 18 1187 -5353 1310 175 68 45 chr9 94907298 94907697 -22954930 + L1MD1 LINE L1 2242 2649 -3891 * 310 82 20 0 chr9 94907701 94907750 -22954877 - MADE1 DNA Mariner -3 77 28 3418 268 62 34 chr9 94907751 94909634 -22952993 + L1MD1 LINE L1 2654 4588 -1952 1530 189 15 9 chr9 94909633 94910005 -22952622 + L1MD1 LINE L1 5605 5982 -654 * 2025 125 111 5 chr9 94910031 94910408 -22952219 - L1PA16 LINE L1 -4 6162 5746 3108 175 28 16 chr9 94910408 94911043 -22951584 + L1MD1 LINE L1 5976 6622 -14 287 97 194 0 chr9 94911207 94911269 -22951358 + MER103 DNA DNA 20 93 -73 2156 114 0 13 chr9 94911440 94911756 -22950871 + AluSx SINE Alu 1 312 0 366 279 122 29 chr9 94913454 94913626 -22949001 + MIR SINE MIR 5 192 -70 2206 84 36 19 chr9 94914080 94914388 -22948239 - AluSp SINE Alu 0 313 1 193 359 23 39 chr9 94914721 94914849 -22947778 + L2 LINE L2 2958 3083 -189 180 270 40 54 chr9 94914908 94914982 -22947645 + L2 LINE L2 3185 3257 -15 381 75 0 0 chr9 94915527 94915580 -22947047 + (CA)n Simple_repeat Simple_repeat 2 54 0 280 232 72 14 chr9 94916010 94916079 -22946548 + L2 LINE L2 3241 3313 0 268 230 11 69 chr9 94916343 94916430 -22946197 + MIR SINE MIR 70 151 -57 305 255 83 63 chr9 94916974 94917320 -22945307 + MLT1J2 LTR MaLR 73 409 0 222 343 14 14 chr9 94917564 94917637 -22944990 + MIR SINE MIR 20 92 -170 198 162 0 59 chr9 94918289 94918357 -22944270 + T-rich Low_complexity Low_complexity 4 67 0 213 313 0 0 chr9 94919239 94919287 -22943340 - L2 LINE L2 -215 3057 3010 326 256 24 104 chr9 94919860 94919985 -22942642 + MIR3 SINE MIR 42 156 -52 645 58 0 0 chr9 94920014 94920100 -22942527 + (TG)n Simple_repeat Simple_repeat 1 86 0 2792 129 5 2 chr9 94921118 94921551 -22941076 - MER57B LTR ERV1 0 434 1 250 266 64 53 chr9 94921783 94921877 -22940750 - MIR SINE MIR -158 104 10 502 253 26 32 chr9 94922083 94922237 -22940390 - MIR SINE MIR -1 261 109 644 266 113 14 chr9 94922562 94922784 -22939843 - MLT1D LTR MaLR 0 505 262 435 167 142 25 chr9 94922826 94922946 -22939681 - MLT1D LTR MaLR -359 146 13 1946 143 55 25 chr9 94923061 94923425 -22939202 - THE1C LTR MaLR 0 375 1 383 297 163 12 chr9 94924393 94924713 -22937914 + HsTC2 DNA Tc2 488 855 -1043 191 399 58 0 chr9 94925062 94925200 -22937427 + MIR3 SINE MIR 31 176 -32 28 0 0 0 chr9 94925349 94925377 -22937250 + AT_rich Low_complexity Low_complexity 1 28 0 188 108 0 27 chr9 94925594 94925631 -22936996 + (TTCTCC)n Simple_repeat Simple_repeat 1 36 0 287 356 54 43 chr9 94925676 94926054 -22936573 + L2 LINE L2 2706 3095 -177 547 310 28 37 chr9 94926713 94926929 -22935698 - MIR SINE MIR -26 236 23 207 312 0 26 chr9 94927239 94927316 -22935311 + MIR3 SINE MIR 15 89 -119 3122 35 5 2 chr9 94927766 94928166 -22934461 - L1P LINE L1 -1285 4861 4461 403 329 7 21 chr9 94929005 94929145 -22933482 - MIR SINE MIR -73 189 52 218 281 45 56 chr9 94929446 94929535 -22933092 - MIR3 SINE MIR -52 156 69 434 323 24 0 chr9 94929633 94929800 -22932827 + MIR SINE MIR 65 235 -27 309 270 31 82 chr9 94931503 94931662 -22930965 - MIR SINE MIR -61 201 51 314 345 0 9 chr9 94931744 94931854 -22930773 - L2 LINE L2 0 3272 3164 919 277 146 6 chr9 94932011 94932475 -22930152 - L2 LINE L2 -173 3140 2623 212 301 54 0 chr9 94933595 94933688 -22928939 - MIR SINE MIR -104 158 61 230 325 44 44 chr9 94933794 94933908 -22928719 + MIR SINE MIR 8 121 -141 1601 213 48 11 chr9 94934740 94935111 -22927516 - MSTD LTR MaLR -11 385 1 254 215 271 9 chr9 94935116 94935223 -22927404 - MIR SINE MIR -114 148 14 498 136 0 0 chr9 94937329 94937410 -22925217 + (TA)n Simple_repeat Simple_repeat 1 81 0 210 37 0 0 chr9 94937410 94937437 -22925190 + (GA)n Simple_repeat Simple_repeat 2 28 0 2302 117 8 17 chr9 94937458 94937816 -22924811 + THE1A LTR MaLR 1 355 0 479 322 41 16 chr9 94938278 94938516 -22924111 - MIR SINE MIR -14 248 6 248 128 0 21 chr9 94938538 94938585 -22924042 + (TTC)n Simple_repeat Simple_repeat 1 46 0 185 225 25 0 chr9 94938680 94938720 -22923907 - L2 LINE L2 -13 3259 3219 311 302 132 7 chr9 94938767 94938917 -22923710 - MIR SINE MIR -14 248 85 362 298 120 60 chr9 94939085 94939451 -22923176 + L1ME4a LINE L1 5518 5861 -260 700 205 0 0 chr9 94939451 94939568 -22923059 + FLAM_C SINE Alu 1 117 -16 195 42 0 0 chr9 94939572 94939596 -22923031 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 362 298 120 60 chr9 94939596 94939758 -22922869 + L1ME4a LINE L1 5863 6083 -38 306 251 295 39 chr9 94939765 94939972 -22922655 - MIR SINE MIR 0 262 3 188 143 24 0 chr9 94943418 94943460 -22919167 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1515 288 114 21 chr9 94943471 94944290 -22918337 - L2 LINE L2 -225 3088 2176 194 364 26 13 chr9 94944289 94944366 -22918261 - L2 LINE L2 -41 3231 3154 * 197 336 75 15 chr9 94944696 94944830 -22917797 + MIR SINE MIR 47 188 -74 1769 200 42 77 chr9 94944886 94945461 -22917166 - MER34B LTR ERV1 0 565 11 290 325 120 0 chr9 94945572 94945689 -22916938 - MLT1K LTR MaLR -109 479 349 442 237 118 26 chr9 94945846 94945998 -22916629 - MLT1K LTR MaLR -279 309 144 600 175 18 0 chr9 94946199 94946313 -22916314 + AluJb SINE Alu 196 311 -1 2428 236 30 30 chr9 94947039 94947682 -22914945 - L1MD3 LINE L1 0 7995 7353 246 309 24 12 chr9 94947793 94947877 -22914750 + L2 LINE L2 2701 2785 -529 377 300 59 56 chr9 94947955 94948242 -22914385 + L2 LINE L2 2991 3278 -35 876 89 0 44 chr9 94948325 94948460 -22914167 - MER4D LTR ERV1 0 903 775 633 49 0 0 chr9 94948463 94948544 -22914083 + (GGAA)n Simple_repeat Simple_repeat 4 84 0 330 293 52 43 chr9 94949751 94949867 -22912760 - MIR3 SINE MIR -50 158 42 2123 113 10 10 chr9 94950493 94950794 -22911833 - AluSx SINE Alu -11 301 1 302 316 108 14 chr9 94950944 94951083 -22911544 - MIR3 SINE MIR -21 187 36 184 395 33 20 chr9 94951357 94951509 -22911118 - MER5A DNA MER1_type -1 188 35 358 306 74 8 chr9 94951793 94951914 -22910713 + L2 LINE L2 3182 3310 -3 252 298 65 48 chr9 94951940 94952064 -22910563 + L2 LINE L2 3139 3264 -8 1919 126 0 0 chr9 94952401 94952663 -22909964 + AluSq SINE Alu 35 296 -17 9099 28 6 2 chr9 94952871 94954038 -22908589 - L1PA3 LINE L1 -711 5444 4273 6184 19 0 10 chr9 94954038 94954759 -22907868 + L1PA3 LINE L1 5442 6155 0 226 261 67 79 chr9 94955580 94955614 -22907013 - MIR SINE MIR -52 210 177 2368 143 6 3 chr9 94955614 94955977 -22906650 - THE1B LTR MaLR 0 364 1 226 261 67 79 chr9 94955977 94956107 -22906520 - MIR SINE MIR -85 177 48 344 344 31 0 chr9 94956220 94956348 -22906279 + MIR SINE MIR 119 250 -12 2294 106 28 22 chr9 94956363 94956722 -22905905 + THE1C LTR MaLR 15 375 0 9408 130 33 33 chr9 94956722 94958302 -22904325 + THE1C-int LTR MaLR 1 1580 0 2079 125 22 44 chr9 94958313 94958674 -22903953 + THE1C LTR MaLR 18 370 -5 415 296 71 6 chr9 94959093 94959262 -22903365 + MIR SINE MIR 71 250 -12 1469 191 87 21 chr9 94959913 94960248 -22902379 - MLT1A2 LTR MaLR 0 374 18 295 316 68 17 chr9 94960280 94960397 -22902230 + L3 LINE CR1 1062 1184 -393 890 262 39 31 chr9 94960875 94960907 -22901720 - L1M1 LINE L1 -4373 3192 3162 2079 138 0 0 chr9 94960907 94961203 -22901424 - AluSg SINE Alu -14 296 1 890 262 39 31 chr9 94961203 94961525 -22901102 - L1M1 LINE L1 -4403 3162 2835 342 190 0 0 chr9 94961531 94961610 -22901017 + L1MA6 LINE L1 6222 6300 0 218 150 0 0 chr9 94961738 94961778 -22900849 + L2 LINE L2 3274 3313 0 7503 31 7 0 chr9 94962432 94963733 -22898894 - L1PA3 LINE L1 0 6155 4851 7488 39 7 1 chr9 94963733 94964659 -22897968 + L1PA3 LINE L1 3931 4861 -1285 198 312 0 26 chr9 94965109 94965186 -22897441 - MIR3 SINE MIR -119 89 15 553 311 27 36 chr9 94965494 94965713 -22896914 + MIR SINE MIR 20 236 -26 281 356 54 43 chr9 94966372 94966750 -22895877 - L2 LINE L2 -177 3095 2706 188 108 0 27 chr9 94966795 94966832 -22895795 + (GGAGAA)n Simple_repeat Simple_repeat 1 36 0 28 0 0 0 chr9 94967049 94967077 -22895550 + AT_rich Low_complexity Low_complexity 1 28 0 200 399 58 0 chr9 94967226 94967364 -22895263 - MIR3 SINE MIR -32 176 31 470 303 159 9 chr9 94967715 94968035 -22894592 - HsTC2 DNA Tc2 -1043 855 488 1946 143 55 25 chr9 94969007 94969371 -22893256 + THE1C LTR MaLR 1 375 0 710 235 93 109 chr9 94969474 94969870 -22892757 + MLT1D LTR MaLR 1 505 0 518 247 26 32 chr9 94970195 94970349 -22892278 + MIR SINE MIR 109 261 -1 246 266 64 53 chr9 94970555 94970649 -22891978 + MIR SINE MIR 10 104 -158 2781 132 5 2 chr9 94970881 94971314 -22891313 + MER57B LTR ERV1 1 434 0 21 0 0 0 chr9 94971481 94971502 -22891125 + AT_rich Low_complexity Low_complexity 1 21 0 557 72 12 0 chr9 94972338 94972421 -22890206 + (CA)n Simple_repeat Simple_repeat 1 84 0 308 264 24 104 chr9 94972450 94972575 -22890052 - MIR3 SINE MIR -52 156 42 214 313 0 0 chr9 94973148 94973196 -22889431 + L2 LINE L2 3010 3057 -215 198 162 0 59 chr9 94974078 94974146 -22888481 + A-rich Low_complexity Low_complexity 4 67 0 234 329 14 14 chr9 94974798 94974871 -22887756 - MIR SINE MIR -170 92 20 394 283 158 65 chr9 94975115 94975524 -22887103 - MLT1J2 LTR MaLR 0 412 1 268 230 11 69 chr9 94976005 94976092 -22886535 - MIR SINE MIR -57 151 70 285 232 72 14 chr9 94976356 94976425 -22886202 - L2 LINE L2 0 3313 3241 381 75 0 0 chr9 94976855 94976908 -22885719 + (TG)n Simple_repeat Simple_repeat 2 54 0 189 359 23 39 chr9 94977587 94977715 -22884912 - L2 LINE L2 -189 3083 2958 2034 85 37 27 chr9 94978048 94978376 -22884251 + AluSp SINE Alu 1 313 0 371 279 122 29 chr9 94978813 94978985 -22883642 - MIR SINE MIR -70 192 5 2121 117 0 13 chr9 94980685 94981001 -22881626 - AluSx SINE Alu 0 312 1 301 234 133 0 chr9 94981106 94981234 -22881393 - MER103 DNA DNA -2 164 20 3141 173 28 17 chr9 94981398 94982038 -22880589 - L1MD1 LINE L1 -14 6622 5976 2026 127 108 5 chr9 94982038 94982412 -22880215 + L1PA16 LINE L1 5746 6162 -4 1623 189 15 9 chr9 94982438 94982810 -22879817 - L1MD1 LINE L1 -654 5982 5605 * 3638 269 65 38 chr9 94982809 94984693 -22877934 - L1MD1 LINE L1 -1952 4588 2654 326 82 20 0 chr9 94984694 94984743 -22877884 + MADE1 DNA Mariner 28 77 -3 1359 191 65 40 chr9 94984747 94985145 -22877482 - L1MD1 LINE L1 -3891 2649 2242 761 214 67 24 chr9 94985136 94985346 -22877281 - L1MD1 LINE L1 -5353 1187 969 * 2129 267 89 43 chr9 95035348 95036195 -22826432 - L1MD1 LINE L1 -5764 776 18 12201 145 42 29 chr9 95036267 95036347 -22826280 - Tigger1 DNA MER2_type 0 2418 2341 2475 84 3 0 chr9 95036347 95036655 -22825972 - AluSp SINE Alu -4 309 1 12201 145 42 29 chr9 95036655 95037037 -22825590 - Tigger1 DNA MER2_type -77 2341 1966 1396 191 10 56 chr9 95037037 95037166 -22825461 + AluJo SINE Alu 1 134 -178 24 0 0 0 chr9 95037166 95037190 -22825437 + AT_rich Low_complexity Low_complexity 1 24 0 1396 191 10 56 chr9 95037190 95037340 -22825287 + AluJo SINE Alu 134 289 -23 12201 145 42 29 chr9 95037340 95038292 -22824335 - Tigger1 DNA MER2_type -452 1966 1028 2271 123 11 8 chr9 95038292 95038643 -22823984 + THE1A LTR MaLR 1 352 -3 12201 145 42 29 chr9 95038643 95039602 -22823025 - Tigger1 DNA MER2_type -1390 1028 11 201 287 178 16 chr9 95039607 95039736 -22822891 - MIR SINE MIR -64 198 49 397 369 129 10 chr9 95039900 95040209 -22822418 + L3 LINE CR1 1129 1474 -103 196 321 123 0 chr9 95040281 95040362 -22822265 + MIR SINE MIR 55 145 -63 267 368 93 40 chr9 95041491 95042150 -22820477 + L2 LINE L2 2376 3062 -210 2441 67 0 6 chr9 95042308 95042620 -22820007 + AluY SINE Alu 1 310 -1 2325 77 0 0 chr9 95043381 95043681 -22818946 - AluY SINE Alu -11 300 1 266 278 62 35 chr9 95044092 95044236 -22818391 - MER67A LTR ERV1 -1 542 395 2131 127 0 0 chr9 95044352 95044652 -22817975 + AluSc SINE Alu 1 300 -9 253 307 53 33 chr9 95044664 95044814 -22817813 - MER67B LTR ERV1 -472 189 37 1865 201 34 44 chr9 95044904 95045402 -22817225 + MLT1D LTR MaLR 3 495 -10 925 279 92 40 chr9 95046649 95047029 -22815598 - L2 LINE L2 -1 3312 2913 513 254 133 32 chr9 95047411 95047690 -22814937 - L2 LINE L2 -426 2888 2582 751 221 26 91 chr9 95047694 95048034 -22814593 + MER33 DNA MER1_type 1 318 -6 685 342 122 11 chr9 95048048 95048490 -22814137 - L2 LINE L2 -749 2565 2075 477 273 6 31 chr9 95048487 95048648 -22813979 + MIR SINE MIR 72 228 -34 * 1669 221 2 3 chr9 95049015 95049463 -22813164 + L1M LINE L1 4949 5395 -779 2651 146 44 4 chr9 95049570 95050023 -22812604 + L1PA16 LINE L1 5683 6153 -13 619 141 0 0 chr9 95050142 95050234 -22812393 + L1PB4 LINE L1 6053 6144 -12 206 382 174 0 chr9 95050349 95050527 -22812100 - MIR SINE MIR -25 237 29 293 279 150 29 chr9 95050692 95050832 -22811795 - MIR3 SINE MIR -22 186 30 1277 206 127 114 chr9 95052540 95053267 -22809360 - LTR1B LTR ERV1 0 826 91 340 361 62 40 chr9 95053419 95053646 -22808981 - MIR SINE MIR -11 251 20 252 306 24 24 chr9 95054917 95055002 -22807625 + MIR3 SINE MIR 15 99 -109 1944 109 84 0 chr9 95055213 95055488 -22807139 + AluSq SINE Alu 1 298 -15 184 176 0 98 chr9 95056235 95056286 -22806341 + L3 LINE CR1 1440 1485 -92 191 304 0 0 chr9 95056628 95056674 -22805953 + MIR SINE MIR 69 114 -94 503 157 39 0 chr9 95057564 95057666 -22804961 - L1MA8 LINE L1 -22 6269 6164 3409 67 0 7 chr9 95057666 95058117 -22804510 + LTR7 LTR ERV1 1 448 -2 3540 121 16 18 chr9 95058119 95058740 -22803887 + HERVH LTR ERV1 1 620 -7093 15481 97 34 16 chr9 95058741 95061253 -22801374 + HERVH LTR ERV1 437 2995 -4718 781 145 41 0 chr9 95061232 95061377 -22801250 + HERVH LTR ERV1 3140 3290 -4423 * 2989 127 2 6 chr9 95061367 95061870 -22800757 + HERVH LTR ERV1 3492 3992 -3721 2742 154 3 2 chr9 95061874 95062489 -22800138 + HERVH LTR ERV1 4489 5149 -2564 902 100 7 13 chr9 95062490 95062640 -22799987 + HERVH LTR ERV1 5600 5748 -1965 1893 68 53 25 chr9 95062641 95062962 -22799665 + HERVH LTR ERV1 7384 7713 0 3419 62 0 9 chr9 95062962 95063412 -22799215 + LTR7 LTR ERV1 1 446 -4 2004 119 32 50 chr9 95063417 95063821 -22798806 - L1MA8 LINE L1 -124 6167 5771 1620 217 43 62 chr9 95064395 95064907 -22797720 - MLT2B1 LTR ERVL -1 519 18 1897 100 38 24 chr9 95064915 95065204 -22797423 + AluSq SINE Alu 5 297 -16 243 357 41 20 chr9 95065365 95065463 -22797164 - L3 LINE CR1 -44 1533 1434 197 281 52 74 chr9 95065520 95065655 -22796972 - MIR SINE MIR -13 249 118 21 0 0 0 chr9 95065655 95065676 -22796951 + AT_rich Low_complexity Low_complexity 1 21 0 197 311 16 66 chr9 95066026 95066148 -22796479 + L2 LINE L2 3183 3298 -15 190 318 71 56 chr9 95066251 95066377 -22796250 + L2 LINE L2 3145 3272 0 1958 214 62 20 chr9 95067068 95067653 -22794974 + L1M4c LINE L1 1221 1829 -4555 1295 251 38 62 chr9 95067690 95068349 -22794278 - L1M4c LINE L1 -5427 1115 493 1934 153 10 0 chr9 95068366 95068661 -22793966 - AluSx SINE Alu -14 298 1 548 279 72 38 chr9 95069090 95069409 -22793218 + L1MC4a LINE L1 5598 5927 -1881 236 314 65 16 chr9 95069622 95069746 -22792881 + L2 LINE L2 2732 2861 -453 42 0 0 0 chr9 95069776 95069818 -22792809 + AT_rich Low_complexity Low_complexity 1 42 0 299 339 107 57 chr9 95069836 95069988 -22792639 + L2 LINE L2 2897 3040 -273 1966 179 0 0 chr9 95069988 95070296 -22792331 + AluJb SINE Alu 3 310 -2 299 339 107 57 chr9 95070296 95070509 -22792118 + L2 LINE L2 3040 3280 -33 188 298 12 95 chr9 95073561 95073645 -22788982 + MIR SINE MIR 1 77 -185 288 371 73 0 chr9 95073779 95073930 -22788697 - MIR SINE MIR -72 190 29 236 309 78 49 chr9 95074659 95074845 -22787782 + MIR3 SINE MIR 5 192 -63 301 213 12 62 chr9 95075593 95075673 -22786954 - MIR SINE MIR -117 91 16 180 264 155 16 chr9 95076139 95076268 -22786359 - L2 LINE L2 -181 3091 2945 1983 140 0 3 chr9 95076868 95077189 -22785438 - AluSx SINE Alu 0 312 1 296 256 94 43 chr9 95077460 95077577 -22785050 - MIR3 SINE MIR -5 203 81 242 305 37 73 chr9 95078057 95078221 -22784406 + MIR3 SINE MIR 13 170 -38 304 300 82 0 chr9 95079492 95079602 -22783025 + MIR SINE MIR 17 135 -73 188 346 37 0 chr9 95079604 95079685 -22782942 + L2 LINE L2 3218 3301 -12 322 227 11 0 chr9 95079846 95079934 -22782693 - MER53 DNA DNA 0 189 101 216 319 37 107 chr9 95080269 95080623 -22782004 + L2 LINE L2 2019 2347 -967 248 323 98 0 chr9 95081276 95081409 -22781218 - MIR SINE MIR -12 250 105 659 234 0 0 chr9 95081439 95081563 -22781064 - MER45A DNA AcHobo -53 125 2 317 302 40 12 chr9 95082092 95082222 -22780405 - MIR SINE MIR -83 125 36 21 0 0 0 chr9 95082231 95082252 -22780375 + AT_rich Low_complexity Low_complexity 1 21 0 2216 102 0 0 chr9 95082318 95082611 -22780016 + AluSc SINE Alu 1 293 -16 1848 139 56 0 chr9 95083191 95083478 -22779149 - AluSx SINE Alu -9 303 1 27 0 0 0 chr9 95083972 95083999 -22778628 + AT_rich Low_complexity Low_complexity 1 27 0 323 331 32 24 chr9 95084280 95084404 -22778223 + L2 LINE L2 2208 2332 -982 219 139 0 0 chr9 95084489 95084525 -22778102 + (T)n Simple_repeat Simple_repeat 1 36 0 268 377 57 19 chr9 95085539 95085698 -22776929 + L1ME3A LINE L1 427 591 -5528 648 325 61 57 chr9 95085703 95086146 -22776481 + L1ME3A LINE L1 620 1067 -5052 2505 84 0 0 chr9 95086146 95086457 -22776170 + AluY SINE Alu 1 311 0 648 325 61 57 chr9 95086457 95086487 -22776140 + L1ME3A LINE L1 1067 1095 -5024 341 273 131 43 chr9 95086613 95087006 -22775621 + L1ME3A LINE L1 1095 1656 -4473 491 306 87 36 chr9 95087489 95087881 -22774746 + L1ME3A LINE L1 2217 2628 -3501 324 241 50 30 chr9 95088176 95088375 -22774252 + L1ME3A LINE L1 2832 3034 -3095 2098 64 6 76 chr9 95088398 95088623 -22774004 + L1PA13 LINE L1 5856 6052 -111 2121 130 7 0 chr9 95088623 95088931 -22773696 + AluSx SINE Alu 3 312 0 2098 64 6 76 chr9 95088931 95089035 -22773592 + L1PA13 LINE L1 6052 6162 -1 1765 183 0 34 chr9 95089052 95089375 -22773252 + AluJb SINE Alu 1 312 0 2339 89 0 6 chr9 95089471 95089784 -22772843 - AluY SINE Alu 0 311 1 24 32 0 0 chr9 95089791 95089822 -22772805 + AT_rich Low_complexity Low_complexity 1 31 0 5113 161 60 35 chr9 95089926 95091541 -22771086 - L1PA16 LINE L1 -8 6861 5212 * 5569 205 25 9 chr9 95091533 95092533 -22770094 - L1PA16 LINE L1 -5832 1017 2 2103 108 7 16 chr9 95092748 95093054 -22769573 + AluSg SINE Alu 1 303 -7 720 130 23 0 chr9 95093198 95093329 -22769298 - L1MA5 LINE L1 -2 6298 6165 351 245 77 28 chr9 95093557 95093700 -22768927 + L1ME3A LINE L1 3790 3939 -2190 867 291 39 28 chr9 95093761 95094118 -22768509 - MLT1I LTR MaLR 0 409 49 2244 102 7 0 chr9 95094128 95094432 -22768195 - AluSc SINE Alu -3 306 1 549 296 148 31 chr9 95094519 95095101 -22767526 + L1ME3A LINE L1 3988 4637 -1492 351 277 87 87 chr9 95095408 95095661 -22766966 + L1ME3A LINE L1 5006 5258 -871 949 302 60 16 chr9 95095673 95096261 -22766366 + L1ME3A LINE L1 5291 5907 -246 267 232 0 0 chr9 95096488 95096570 -22766057 + (TCTA)n Simple_repeat Simple_repeat 1 82 0 1468 211 113 3 chr9 95096572 95096899 -22765728 - MLT1A1 LTR MaLR 0 365 3 333 0 0 0 chr9 95096901 95096938 -22765689 + (TCTA)n Simple_repeat Simple_repeat 3 39 0 239 246 16 0 chr9 95097466 95097527 -22765100 + L2 LINE L2 3252 3313 0 300 196 111 128 chr9 95098860 95099166 -22763461 - LTR50 LTR ERVL 0 795 495 232 104 62 0 chr9 95099515 95099563 -22763064 + (CATATA)n Simple_repeat Simple_repeat 6 56 0 265 287 75 16 chr9 95099734 95099924 -22762703 - L1ME LINE L1 -344 5777 5576 658 178 0 59 chr9 95100191 95100326 -22762301 - FLAM_C SINE Alu -16 127 1 258 386 20 39 chr9 95100742 95100895 -22761732 + L2 LINE L2 3117 3266 -6 471 194 4 174 chr9 95100978 95101225 -22761402 + L1MA10 LINE L1 6117 6321 -13 2233 88 10 3 chr9 95101517 95101814 -22760813 - AluSp SINE Alu -14 299 1 229 246 15 0 chr9 95102717 95102782 -22759845 - L1ME3A LINE L1 -15 6155 6090 1512 161 86 15 chr9 95102802 95103069 -22759558 - AluSx SINE Alu -26 286 1 654 188 67 86 chr9 95103073 95103328 -22759299 - L1ME3A LINE L1 -72 6098 5849 25 65 0 0 chr9 95103332 95103378 -22759249 + AT_rich Low_complexity Low_complexity 1 46 0 441 0 0 0 chr9 95103519 95103568 -22759059 + (CA)n Simple_repeat Simple_repeat 2 50 0 253 182 15 15 chr9 95103645 95103711 -22758916 + CT-rich Low_complexity Low_complexity 2 67 0 358 321 88 25 chr9 95104939 95105098 -22757529 - MIR SINE MIR -71 191 23 194 204 68 0 chr9 95105709 95105753 -22756874 - L2 LINE L2 -240 3032 2986 193 287 46 23 chr9 95105908 95105995 -22756632 - L2 LINE L2 -460 2854 2766 2326 132 14 3 chr9 95106301 95106672 -22755955 + THE1C LTR MaLR 1 375 0 319 357 0 0 chr9 95108801 95108927 -22753700 + MIR3 SINE MIR 52 177 -31 197 62 0 31 chr9 95109412 95109444 -22753183 + (TAA)n Simple_repeat Simple_repeat 2 32 0 235 310 23 31 chr9 95109683 95109812 -22752815 - MIR SINE MIR -62 146 19 284 283 214 44 chr9 95109910 95110069 -22752558 + MER63A DNA MER1_type 1 186 -24 331 336 9 9 chr9 95110453 95110569 -22752058 + L2 LINE L2 3188 3303 -10 230 298 163 7 chr9 95110607 95110748 -22751879 + MIR SINE MIR 73 235 -27 501 151 0 0 chr9 95110775 95110861 -22751766 + CT-rich Low_complexity Low_complexity 2 87 0 258 105 0 0 chr9 95110881 95110919 -22751708 + (TTA)n Simple_repeat Simple_repeat 2 39 0 257 313 10 31 chr9 95111337 95111433 -22751194 - L2 LINE L2 -18 3295 3202 274 354 68 10 chr9 95111495 95111701 -22750926 - L2 LINE L2 -428 2886 2669 210 250 88 75 chr9 95111736 95111816 -22750811 + L2 LINE L2 3191 3271 -1 38 22 0 0 chr9 95111833 95111878 -22750749 + AT_rich Low_complexity Low_complexity 1 45 0 7298 13 2 0 chr9 95111888 95112722 -22749905 - L1PA2 LINE L1 -8 6147 5312 5312 31 0 0 chr9 95112718 95113361 -22749266 + L1PA2 LINE L1 4653 5295 -851 * 35 71 0 0 chr9 95113361 95113431 -22749196 + AT_rich Low_complexity Low_complexity 1 70 0 195 396 89 12 chr9 95113431 95113600 -22749027 - MIR SINE MIR -61 201 20 2750 203 77 29 chr9 95113829 95114528 -22748099 - MER44D DNA MER2_type 0 605 1 617 286 73 73 chr9 95114755 95115140 -22747487 - MLT1J LTR MaLR 0 511 127 310 345 84 14 chr9 95115585 95115727 -22746900 - MER5A DNA MER1_type 0 189 38 425 363 22 18 chr9 95115790 95116016 -22746611 - MIR SINE MIR -34 228 2 209 362 81 7 chr9 95116868 95117017 -22745610 + L2 LINE L2 1850 2009 -1305 672 323 18 14 chr9 95117142 95117362 -22745265 + MIR SINE MIR 29 249 -13 757 282 90 57 chr9 95118067 95118785 -22743842 + L1ME LINE L1 272 1020 -5050 1730 116 34 10 chr9 95118785 95119079 -22743548 + L1MA2 LINE L1 6004 6304 0 757 282 90 57 chr9 95119079 95119152 -22743475 + L1ME LINE L1 1020 1089 -4981 2654 118 0 0 chr9 95119222 95119602 -22743025 + L1PA8 LINE L1 5793 6172 0 338 279 81 72 chr9 95119781 95120003 -22742624 + L1ME LINE L1 1241 1464 -4616 675 239 78 24 chr9 95120021 95120276 -22742351 + L1ME2 LINE L1 32 300 -6123 890 116 12 41 chr9 95120284 95120456 -22742171 - L1MA7 LINE L1 -2 6289 6123 237 114 0 0 chr9 95120704 95120739 -22741888 - L1MA7 LINE L1 -152 6139 6105 * 595 307 111 10 chr9 95120737 95121043 -22741584 + L1ME2 LINE L1 301 637 -5786 1090 259 109 28 chr9 95121115 95121596 -22741031 + L1ME2 LINE L1 3776 4217 -2742 673 283 11 5 chr9 95121596 95121780 -22740847 + MER5A DNA MER1_type 4 188 -1 1090 259 109 28 chr9 95121780 95121997 -22740630 + L1ME2 LINE L1 4217 4415 -2544 2583 90 26 18 chr9 95121997 95122385 -22740242 + L1PA13 LINE L1 5773 6163 0 1090 259 109 28 chr9 95122385 95124572 -22738055 + L1ME2 LINE L1 4415 6925 -34 223 382 106 24 chr9 95125559 95125852 -22736775 + L2 LINE L2 2988 3304 -9 313 265 10 39 chr9 95125983 95126085 -22736542 + MLT1I LTR MaLR 297 395 -14 27 0 0 0 chr9 95126370 95126397 -22736230 + AT_rich Low_complexity Low_complexity 1 27 0 261 279 38 13 chr9 95127122 95127201 -22735426 - MIR SINE MIR -112 150 70 30 69 0 0 chr9 95127283 95127341 -22735286 + AT_rich Low_complexity Low_complexity 1 58 0 183 100 0 0 chr9 95127820 95127850 -22734777 + (A)n Simple_repeat Simple_repeat 1 30 0 644 112 17 17 chr9 95129053 95129169 -22733458 + L1PB3 LINE L1 5308 5423 -733 1187 122 6 0 chr9 95129172 95129336 -22733291 + AluSx SINE Alu 1 165 -147 456 146 12 0 chr9 95129337 95129419 -22733208 + AluSc SINE Alu 224 306 -3 2269 115 3 52 chr9 95129419 95129801 -22732826 + L1PB3 LINE L1 5420 5782 -372 433 113 44 28 chr9 95129808 95130061 -22732566 + (TA)n Simple_repeat Simple_repeat 1 257 0 23 33 0 0 chr9 95130065 95130095 -22732532 + AT_rich Low_complexity Low_complexity 1 30 0 2013 149 35 24 chr9 95130099 95130468 -22732159 + L1PB3 LINE L1 5782 6154 0 2239 153 37 37 chr9 95130636 95131126 -22731501 + MLT2A2 LTR ERVL 1 491 -63 7174 94 58 61 chr9 95131126 95132396 -22730231 - MER11A LTR ERVK 0 1266 1 2239 153 37 37 chr9 95132396 95132461 -22730166 + MLT2A2 LTR ERVL 491 554 0 409 267 46 23 chr9 95132779 95132910 -22729717 - MIR SINE MIR -42 220 87 238 361 104 30 chr9 95133756 95134025 -22728602 - L2 LINE L2 -338 2976 2688 323 368 111 19 chr9 95134136 95134506 -22728121 + L1MC/D LINE L1 5332 5735 -2073 257 301 45 65 chr9 95134611 95134810 -22727817 + LTR33 LTR ERVL 155 349 -172 367 275 46 23 chr9 95134828 95134959 -22727668 - MIR SINE MIR -42 220 87 714 261 49 29 chr9 95185691 95185936 -22676691 + MIR SINE MIR 13 262 0 244 327 28 28 chr9 95186091 95186198 -22676429 + L3 LINE CR1 348 454 -1123 381 340 19 45 chr9 95186426 95186582 -22676045 + MIR SINE MIR 2 153 -109 538 263 39 45 chr9 95186638 95186817 -22675810 - MIR SINE MIR -81 181 4 450 300 49 38 chr9 95186863 95187126 -22675501 - L2 LINE L2 0 3313 3048 248 350 60 0 chr9 95188052 95188152 -22674475 + MIR3 SINE MIR 4 109 -99 22 80 0 0 chr9 95188303 95188353 -22674274 + AT_rich Low_complexity Low_complexity 1 50 0 399 265 34 8 chr9 95188424 95188541 -22674086 - L1MC4 LINE L1 -148 7894 7775 831 264 61 108 chr9 95188541 95189293 -22673334 - L1M4c LINE L1 -4453 2372 1503 1358 247 4 0 chr9 95189310 95189585 -22673042 - AluJo SINE Alu -36 276 1 585 243 14 0 chr9 95189585 95189725 -22672902 - L1M4c LINE L1 -5031 1511 1370 1917 132 73 22 chr9 95189865 95190222 -22672405 - THE1C LTR MaLR 0 375 1 9243 146 10 36 chr9 95190223 95191842 -22670785 - THE1C-int LTR MaLR -1 1579 3 1750 150 67 28 chr9 95191844 95192203 -22670424 - THE1C LTR MaLR 0 375 3 694 239 114 28 chr9 95192246 95192668 -22669959 - L1MDa LINE L1 -2699 3841 3384 438 282 12 7 chr9 95192680 95192884 -22669743 - L1MDa LINE L1 -5175 1355 1126 4826 186 25 8 chr9 95192929 95193182 -22669445 + L1MC1 LINE L1 5360 5607 -726 267 103 0 0 chr9 95193182 95193221 -22669406 + (CTATA)n Simple_repeat Simple_repeat 1 39 0 4826 186 25 8 chr9 95193221 95193526 -22669101 + L1MC1 LINE L1 5607 5905 -428 3088 163 37 25 chr9 95193526 95194121 -22668506 + MER7C DNA MER2_type 1 602 0 4826 186 25 8 chr9 95194121 95194519 -22668108 + L1MC1 LINE L1 5905 6333 0 * 7323 263 54 25 chr9 95194512 95195223 -22667404 + L1ME1 LINE L1 2174 2862 -3296 2096 110 3 3 chr9 95195223 95195524 -22667103 - AluY SINE Alu -10 301 1 7323 263 54 25 chr9 95195524 95197960 -22664667 + L1ME1 LINE L1 2862 5415 -743 902 226 73 55 chr9 95197959 95198286 -22664341 + L1ME1 LINE L1 5830 6162 -4 * 911 213 83 65 chr9 95198366 95198511 -22664116 + L1ME3A LINE L1 4458 4599 -1547 210 37 0 0 chr9 95198511 95198538 -22664089 + (TG)n Simple_repeat Simple_repeat 2 28 0 911 213 83 65 chr9 95198538 95198838 -22663789 + L1ME3A LINE L1 4599 4911 -1235 274 314 57 0 chr9 95198882 95199022 -22663605 + L1ME3A LINE L1 4998 5145 -1001 259 132 57 19 chr9 95199255 95199308 -22663319 + L1PB3 LINE L1 5461 5515 -639 1289 158 174 32 chr9 95199308 95199619 -22663008 - THE1A LTR MaLR 0 355 1 1114 88 0 19 chr9 95199619 95199779 -22662848 - THE1A-int LTR MaLR 0 1580 1424 563 141 0 0 chr9 95199767 95199859 -22662768 - THE1B-int LTR MaLR -1488 92 1 * 1986 160 33 28 chr9 95199859 95200221 -22662406 - THE1B LTR MaLR 0 364 1 1570 134 7 55 chr9 95200221 95200361 -22662266 + L1PB3 LINE L1 5511 5656 -495 2261 127 19 25 chr9 95200361 95200723 -22661904 + THE1B LTR MaLR 1 360 -4 10889 105 6 38 chr9 95200727 95201132 -22661495 + THE1B-int LTR MaLR 1 417 -1163 731 83 9 0 chr9 95201132 95201240 -22661387 + (TTCC)n Simple_repeat Simple_repeat 4 112 0 10889 105 6 38 chr9 95201240 95201253 -22661374 + THE1B-int LTR MaLR 417 429 -1151 1927 122 17 44 chr9 95201253 95201549 -22661078 - AluSx SINE Alu -9 303 16 10889 105 6 38 chr9 95201549 95202761 -22659866 + THE1B-int LTR MaLR 429 1580 0 2094 140 19 30 chr9 95202763 95203127 -22659500 + THE1B LTR MaLR 3 362 -2 1570 134 7 55 chr9 95203127 95203269 -22659358 + L1PB3 LINE L1 5660 5787 -364 2154 135 9 0 chr9 95203348 95203695 -22658932 + L1PB3 LINE L1 5797 6146 -8 1036 57 6 13 chr9 95203695 95203853 -22658774 + (TCTA)n Simple_repeat Simple_repeat 2 158 0 954 285 41 45 chr9 95203970 95204359 -22658268 + L1M4c LINE L1 1069 1457 -4927 1968 149 0 7 chr9 95204359 95204654 -22657973 - AluSx SINE Alu -17 295 3 954 285 41 45 chr9 95204654 95204798 -22657829 + L1M4c LINE L1 1457 1600 -4784 699 260 101 22 chr9 95204802 95205041 -22657586 + L1M1 LINE L1 2974 3193 -4374 1571 199 13 3 chr9 95205041 95205342 -22657285 + AluJb SINE Alu 4 307 -5 699 260 101 22 chr9 95205342 95205652 -22656975 + L1M1 LINE L1 3193 3562 -4005 279 331 38 0 chr9 95206233 95206390 -22656237 + L1ME3A LINE L1 5131 5293 -853 376 226 198 9 chr9 95206437 95206565 -22656062 + L1ME3A LINE L1 5374 5477 -693 955 167 21 94 chr9 95206565 95206798 -22655829 - MER20 DNA MER1_type 0 219 4 376 226 198 9 chr9 95206798 95206881 -22655746 + L1ME3A LINE L1 5477 5625 -545 823 256 197 17 chr9 95206886 95207307 -22655320 + L1ME3A LINE L1 5660 6156 -14 2451 176 27 55 chr9 95207416 95208001 -22654626 - L1MA10 LINE L1 0 6334 5766 2182 97 0 27 chr9 95208242 95208541 -22654086 + AluSc SINE Alu 1 291 -18 276 311 9 28 chr9 95208637 95208743 -22653884 + MLT1K LTR MaLR 18 121 -467 548 179 0 0 chr9 95209805 95209939 -22652688 - AluJ SINE Alu 0 334 201 * 741 197 7 7 chr9 95209935 95210077 -22652550 - AluJ SINE Alu -170 142 1 530 294 16 0 chr9 95210080 95210206 -22652421 - MIR SINE MIR -106 156 29 323 362 68 12 chr9 95210440 95210603 -22652024 + MER91A DNA MER1_type 12 183 -13 228 35 0 0 chr9 95210789 95210818 -22651809 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2077 60 30 4 chr9 95211107 95211372 -22651255 - AluY SINE Alu -39 272 1 1684 207 36 27 chr9 95211480 95211929 -22650698 - L1MD3 LINE L1 -16 7979 7527 711 233 99 54 chr9 95212199 95212512 -22650115 - L1MC4a LINE L1 -451 7357 7031 3518 209 22 30 chr9 95213126 95213840 -22648787 + L1MB5 LINE L1 5319 6026 -148 2062 133 3 0 chr9 95213840 95214142 -22648485 + AluSq SINE Alu 1 303 -10 3518 209 22 30 chr9 95214142 95214289 -22648338 + L1MB5 LINE L1 6026 6173 -1 778 261 158 51 chr9 95214351 95214959 -22647668 - L1ME3 LINE L1 -2 6160 5488 270 81 0 0 chr9 95215128 95215165 -22647462 + (TCTA)n Simple_repeat Simple_repeat 4 40 0 410 203 44 0 chr9 95215173 95215331 -22647296 + (TA)n Simple_repeat Simple_repeat 1 165 0 2357 301 72 17 chr9 95215475 95216911 -22645716 - L1ME3 LINE L1 -966 5180 3667 333 0 0 0 chr9 95217342 95217379 -22645248 + (CA)n Simple_repeat Simple_repeat 2 38 0 1700 94 22 38 chr9 95217399 95217666 -22644961 - L1PA10 LINE L1 -11 6157 5895 466 287 77 28 chr9 95218171 95218352 -22644275 + L1MEd LINE L1 978 1167 -5363 392 222 90 60 chr9 95218494 95218728 -22643899 + L1MEd LINE L1 1276 1516 -5014 482 284 51 82 chr9 95218771 95218963 -22643664 + L1MEd LINE L1 1722 1900 -4640 2146 126 0 3 chr9 95218963 95219272 -22643355 - AluY SINE Alu -3 308 1 482 284 51 82 chr9 95219272 95219434 -22643193 + L1MEd LINE L1 1900 2065 -4475 252 314 45 36 chr9 95219806 95220026 -22642601 + L1MEd LINE L1 2525 2746 -3794 1931 138 31 0 chr9 95220033 95220322 -22642305 - AluSx SINE Alu -14 298 1 829 231 41 53 chr9 95220613 95220856 -22641771 - MIR SINE MIR -21 241 2 372 288 95 43 chr9 95220919 95221697 -22640930 + L1MEd LINE L1 3120 3940 -2600 965 202 4 119 chr9 95221843 95222095 -22640532 - MER58A DNA MER1_type -1 223 1 526 250 23 23 chr9 95222103 95222231 -22640396 - MER5B DNA MER1_type 0 178 51 316 333 94 12 chr9 95222295 95222466 -22640161 + MLT1J2 LTR MaLR 266 450 0 1867 146 29 26 chr9 95222707 95223015 -22639612 - AluSx SINE Alu -3 309 1 207 0 0 0 chr9 95223195 95223218 -22639409 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 25 0 0 0 chr9 95223412 95223437 -22639190 + AT_rich Low_complexity Low_complexity 1 25 0 1072 270 97 8 chr9 95224131 95224501 -22638126 + MLT1J2 LTR MaLR 38 440 -10 21 0 0 0 chr9 95225573 95225594 -22637033 + AT_rich Low_complexity Low_complexity 1 21 0 2482 65 0 3 chr9 95225622 95225931 -22636696 - AluY SINE Alu -3 308 1 23 0 0 0 chr9 95225931 95225954 -22636673 + AT_rich Low_complexity Low_complexity 1 23 0 1438 223 23 0 chr9 95226347 95226652 -22635975 + AluJo SINE Alu 1 312 0 274 344 70 32 chr9 95227088 95227245 -22635382 + MIR SINE MIR 2 164 -98 343 266 18 18 chr9 95227370 95227479 -22635148 + MIR SINE MIR 31 139 -123 305 164 77 58 chr9 95227568 95227672 -22634955 - MIR SINE MIR -38 224 119 1415 229 3 10 chr9 95227797 95228107 -22634520 - AluJo SINE Alu -4 308 1 348 294 42 21 chr9 95228846 95228989 -22633638 - MIR SINE MIR -108 154 9 292 323 32 0 chr9 95229224 95229317 -22633310 - MIR3 SINE MIR -4 204 109 198 328 0 0 chr9 95229795 95229862 -22632765 + L2 LINE L2 3242 3308 -5 515 272 37 6 chr9 95230342 95230504 -22632123 - MIR3 SINE MIR -21 187 21 189 226 0 0 chr9 95231634 95231687 -22630940 + CT-rich Low_complexity Low_complexity 5 57 0 277 345 65 30 chr9 95231770 95232002 -22630625 + MIR SINE MIR 17 256 -6 300 286 104 66 chr9 95232220 95232402 -22630225 + MIR SINE MIR 48 236 -26 194 141 99 113 chr9 95233909 95233980 -22628647 - L2 LINE L2 0 3272 3203 305 257 139 0 chr9 95234006 95234107 -22628520 - L2 LINE L2 0 3272 3158 336 340 82 6 chr9 95234442 95234601 -22628026 - MIR SINE MIR -71 191 21 303 356 16 8 chr9 95235341 95235537 -22627090 + MIR SINE MIR 20 262 0 334 320 81 41 chr9 95236544 95236716 -22625911 - MIR3 SINE MIR -13 195 17 368 297 135 31 chr9 95236769 95236998 -22625629 - MIR SINE MIR -2 260 8 234 267 17 0 chr9 95237140 95237200 -22625427 - MIR SINE MIR -153 109 49 222 326 0 34 chr9 95237267 95237356 -22625271 + MIR SINE MIR 61 146 -62 659 242 22 60 chr9 95237904 95238086 -22624541 + MER5B DNA MER1_type 4 178 0 340 256 238 30 chr9 95238278 95238442 -22624185 + MIR SINE MIR 59 256 -6 499 182 16 0 chr9 95238484 95238605 -22624022 + GA-rich Low_complexity Low_complexity 2 124 0 533 379 58 14 chr9 95238621 95239038 -22623589 + L2 LINE L2 2449 2883 -431 346 368 24 59 chr9 95239095 95239383 -22623244 + L2 LINE L2 2914 3191 -81 315 71 0 0 chr9 95239397 95239439 -22623188 + (CA)n Simple_repeat Simple_repeat 1 42 0 190 283 17 17 chr9 95240174 95240234 -22622393 - MIR3 SINE MIR -3 205 146 559 245 50 55 chr9 95240337 95240537 -22622090 + MLT1E1 LTR MaLR 1 199 -425 2071 137 0 13 chr9 95240540 95240927 -22621700 - AluSx SINE Alu 0 383 1 1000 242 155 17 chr9 95240928 95241283 -22621344 + MLT1E1 LTR MaLR 241 644 -10 766 340 30 26 chr9 95241334 95241796 -22620831 + MLT1K LTR MaLR 125 588 0 684 308 11 15 chr9 95242003 95242266 -22620361 - MIR SINE MIR 0 262 1 531 331 0 0 chr9 95242544 95242677 -22619950 + MIR SINE MIR 19 151 -57 269 222 0 0 chr9 95242936 95242999 -22619628 - MIR SINE MIR -110 152 90 2271 178 65 6 chr9 95243306 95243818 -22618809 - L1MC3 LINE L1 -6 7779 7238 1352 193 69 43 chr9 95244105 95244453 -22618174 - L1MA9 LINE L1 -385 5915 5559 1801 129 49 36 chr9 95244454 95244819 -22617808 + L1MA9 LINE L1 5939 6308 -4 282 138 0 0 chr9 95245076 95245134 -22617493 + (TGAA)n Simple_repeat Simple_repeat 1 58 0 311 261 174 9 chr9 95245507 95245622 -22617005 - MIR SINE MIR -105 157 24 370 314 58 0 chr9 95246974 95247095 -22615532 - MIR SINE MIR -15 247 120 251 356 69 20 chr9 95248279 95248380 -22614247 + L2 LINE L2 3148 3253 -19 1373 184 20 62 chr9 95248391 95248557 -22614070 - AluJb SINE Alu -21 291 142 2558 66 0 0 chr9 95248557 95248862 -22613765 - AluY SINE Alu -6 305 1 1373 184 20 62 chr9 95248862 95248999 -22613628 - AluJb SINE Alu -170 142 1 289 253 83 81 chr9 95250979 95251122 -22611505 - MIR3 SINE MIR -81 127 4 699 90 0 0 chr9 95251326 95251426 -22611201 + (GGAA)n Simple_repeat Simple_repeat 3 102 0 406 346 7 26 chr9 95251781 95251934 -22610693 - MIR3 SINE MIR -15 193 44 767 126 0 0 chr9 95252279 95252390 -22610237 + FLAM_C SINE Alu 1 111 -32 1528 151 0 0 chr9 95252397 95252615 -22610012 - AluSg/x SINE Alu -16 296 79 21 0 0 0 chr9 95252617 95252638 -22609989 + AT_rich Low_complexity Low_complexity 1 21 0 2645 101 0 0 chr9 95253088 95253443 -22609184 - THE1A LTR MaLR 0 355 1 11540 97 8 4 chr9 95253443 95255017 -22607610 - THE1A-int LTR MaLR 0 1580 1 2674 90 3 3 chr9 95255017 95255372 -22607255 - THE1A LTR MaLR 0 355 1 2003 122 50 44 chr9 95256088 95256450 -22606177 - THE1B LTR MaLR 0 364 1 335 367 37 47 chr9 95256504 95256773 -22605854 - L2 LINE L2 -144 3128 2861 2498 243 4 13 chr9 95256773 95257320 -22605307 + MLT1F LTR MaLR 1 542 0 335 367 37 47 chr9 95257320 95257477 -22605150 - L2 LINE L2 -411 2861 2704 351 242 180 23 chr9 95258140 95258268 -22604359 - MER5A DNA MER1_type 0 189 42 399 305 85 23 chr9 95258350 95258527 -22604100 - L3 LINE CR1 -53 1524 1337 246 62 0 0 chr9 95258657 95258689 -22603938 + (TGAA)n Simple_repeat Simple_repeat 4 35 0 264 351 32 11 chr9 95259095 95259189 -22603438 + MIR3 SINE MIR 4 99 -109 197 290 80 65 chr9 95260226 95260364 -22602263 - MIR SINE MIR -106 156 17 209 256 58 58 chr9 95260367 95260453 -22602174 + MIR SINE MIR 60 145 -117 414 0 0 0 chr9 95260593 95260639 -22601988 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 312 194 97 54 chr9 95261032 95261125 -22601502 - MIR3 SINE MIR -20 188 92 183 80 0 0 chr9 95261496 95261521 -22601106 + (TG)n Simple_repeat Simple_repeat 2 26 0 23 33 0 0 chr9 95261849 95261879 -22600748 + AT_rich Low_complexity Low_complexity 1 30 0 27 49 0 0 chr9 95263343 95263384 -22599243 + AT_rich Low_complexity Low_complexity 1 41 0 268 293 9 57 chr9 95263506 95263612 -22599015 + MIR SINE MIR 57 157 -105 210 71 0 0 chr9 95264131 95264159 -22598468 + (T)n Simple_repeat Simple_repeat 1 28 0 26 0 0 0 chr9 95264297 95264323 -22598304 + AT_rich Low_complexity Low_complexity 1 26 0 305 279 13 13 chr9 95264383 95264462 -22598165 + L2 LINE L2 3188 3266 -6 254 265 26 34 chr9 95264576 95264693 -22597934 + GA-rich Low_complexity Low_complexity 4 119 0 182 128 26 0 chr9 95264929 95264968 -22597659 + (CA)n Simple_repeat Simple_repeat 1 40 0 313 305 35 89 chr9 95265134 95265337 -22597290 + MIR3 SINE MIR 5 196 -12 231 271 62 52 chr9 95265430 95265526 -22597101 - MIR SINE MIR -48 214 118 184 400 61 0 chr9 95265765 95265880 -22596747 + MIR SINE MIR 28 149 -59 564 303 11 6 chr9 95265940 95266118 -22596509 + MIR SINE MIR 48 226 -36 2189 117 3 0 chr9 95266217 95266515 -22596112 + AluSp SINE Alu 1 299 -14 2185 119 7 0 chr9 95266515 95266810 -22595817 + AluSx SINE Alu 3 299 -13 185 297 27 0 chr9 95267395 95267469 -22595158 - L2 LINE L2 -673 2641 2566 593 359 29 0 chr9 95268163 95268369 -22594258 - MIR SINE MIR -2 260 49 218 176 176 65 chr9 95268437 95268545 -22594082 - MIR SINE MIR -92 170 51 2149 224 25 23 chr9 95268635 95269241 -22593386 - L1MC4a LINE L1 -32 7776 7170 293 322 40 0 chr9 95270217 95270366 -22592261 + (CACCAT)n Simple_repeat Simple_repeat 4 158 0 233 301 203 0 chr9 95270480 95270603 -22592024 - MIR SINE MIR -44 218 71 252 227 55 36 chr9 95270612 95270722 -22591905 - MIR3 SINE MIR -5 203 92 686 173 0 7 chr9 95272030 95272169 -22590458 + GA-rich Low_complexity Low_complexity 4 141 0 220 303 61 92 chr9 95272300 95272617 -22590010 - L2 LINE L2 -199 3073 2760 185 296 0 0 chr9 95272792 95272836 -22589791 + MIR SINE MIR 103 146 -62 417 266 14 77 chr9 95273064 95273207 -22589420 - MIR3 SINE MIR -60 148 15 388 151 0 12 chr9 95273876 95273962 -22588665 - L1PB4 LINE L1 0 6156 6072 2094 20 0 0 chr9 95273962 95274210 -22588417 - L1P LINE L1 -1815 4331 4084 5860 28 1 1 chr9 95274210 95274898 -22587729 + L1PA4 LINE L1 5465 6154 -1 4933 144 10 12 chr9 95274921 95276009 -22586618 - L1PB4 LINE L1 -69 6087 5005 263 308 66 0 chr9 95276504 95276595 -22586032 + L2 LINE L2 3172 3268 -4 292 293 49 12 chr9 95277489 95277571 -22585056 + MIR SINE MIR 63 147 -61 205 276 0 66 chr9 95277956 95278032 -22584595 + GA-rich Low_complexity Low_complexity 2 72 0 297 338 38 52 chr9 95278188 95278361 -22584266 - MIR SINE MIR -56 206 38 428 330 47 11 chr9 95278610 95278801 -22583826 + MIR SINE MIR 11 208 -54 222 283 20 50 chr9 95279476 95279575 -22583052 - MIR SINE MIR -26 236 141 1116 170 134 25 chr9 95279759 95279828 -22582799 + MLT1E2 LTR MaLR 1 61 -565 1896 182 11 21 chr9 95279828 95280207 -22582420 + THE1C LTR MaLR 1 375 0 1116 170 134 25 chr9 95280207 95280413 -22582214 + MLT1E2 LTR MaLR 61 306 -320 437 343 56 20 chr9 95280600 95280798 -22581829 - L3 LINE CR1 -106 1471 1267 358 237 321 0 chr9 95280863 95280994 -22581633 + MER5A DNA MER1_type 8 180 -9 237 83 17 33 chr9 95281017 95281077 -22581550 + (CAAAA)n Simple_repeat Simple_repeat 3 61 0 2323 119 34 8 chr9 95281113 95281466 -22581161 - THE1B LTR MaLR 0 364 3 1370 178 0 119 chr9 95282435 95282778 -22579849 - AluJo SINE Alu 0 302 1 285 305 107 43 chr9 95283311 95283544 -22579083 - MIR SINE MIR 0 262 15 201 350 147 17 chr9 95284078 95284255 -22578372 + MIR SINE MIR 34 233 -29 208 294 0 0 chr9 95284941 95284992 -22577635 + L2 LINE L2 3258 3308 -5 194 314 8 116 chr9 95284988 95285061 -22577566 - MIR SINE MIR -140 122 65 * 461 281 0 0 chr9 95285061 95285175 -22577452 + MER81 DNA DNA 1 114 0 194 314 8 116 chr9 95285175 95285222 -22577405 - MIR SINE MIR -197 65 15 683 185 8 0 chr9 95335436 95335555 -22527072 + MLT1L LTR MaLR 155 274 -341 474 296 59 0 chr9 95335669 95335804 -22526823 + MLT1L LTR MaLR 424 566 -49 201 377 130 14 chr9 95335865 95336072 -22526555 - L2 LINE L2 -172 3100 2870 190 275 0 0 chr9 95336292 95336332 -22526295 + MER5B DNA MER1_type 4 43 -135 23 0 0 0 chr9 95336456 95336479 -22526148 + AT_rich Low_complexity Low_complexity 1 23 0 482 306 55 27 chr9 95337013 95337196 -22525431 - MER5A DNA MER1_type 0 189 2 264 266 73 46 chr9 95337259 95337368 -22525259 + MIR SINE MIR 49 160 -102 394 352 96 35 chr9 95338078 95338476 -22524151 + L2 LINE L2 2362 2783 -531 835 205 87 0 chr9 95338501 95338686 -22523941 - MER3 DNA MER1_type -3 206 6 274 354 0 7 chr9 95338894 95339038 -22523589 + L1ME2 LINE L1 5688 5830 -1978 1413 237 21 16 chr9 95339063 95339439 -22523188 + L1ME2 LINE L1 5778 6155 -9 21 36 0 0 chr9 95339439 95339467 -22523160 + AT_rich Low_complexity Low_complexity 1 28 0 332 254 86 105 chr9 95339926 95340135 -22522492 + MLT1K LTR MaLR 378 582 -6 686 234 83 105 chr9 95340209 95340790 -22521837 - L1MC5 LINE L1 -51 7910 7343 1604 86 0 5 chr9 95341082 95341303 -22521324 - L1PA13 LINE L1 -12 6151 5932 374 74 0 37 chr9 95341320 95341374 -22521253 + L1PA13 LINE L1 5899 5950 -211 959 230 46 106 chr9 95341380 95342059 -22520568 - L1MC4 LINE L1 -740 7221 6620 316 282 73 48 chr9 95342345 95342551 -22520076 - L1MC4a LINE L1 -1541 6267 6057 459 0 0 0 chr9 95343355 95343406 -22519221 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 432 316 36 16 chr9 95344298 95344491 -22518136 + MIR3 SINE MIR 6 202 -6 29 0 0 0 chr9 95344964 95344993 -22517634 + AT_rich Low_complexity Low_complexity 1 29 0 396 247 34 0 chr9 95345549 95345638 -22516989 + MER5A DNA MER1_type 10 101 -88 353 316 65 7 chr9 95346161 95346300 -22516327 + MIR SINE MIR 111 257 -5 22 35 0 0 chr9 95346492 95346521 -22516106 + AT_rich Low_complexity Low_complexity 1 29 0 283 289 114 9 chr9 95347620 95347734 -22514893 + MIR SINE MIR 24 149 -59 389 241 310 11 chr9 95348061 95348256 -22514371 + MLT1L LTR MaLR 268 453 -58 1466 214 36 0 chr9 95348375 95348706 -22513921 - MER2 DNA MER2_type -1 343 1 397 283 0 9 chr9 95348927 95349033 -22513594 + MIR SINE MIR 47 151 -111 183 366 69 0 chr9 95349503 95349604 -22513023 + MIR SINE MIR 37 144 -64 1621 219 76 21 chr9 95350023 95350291 -22512336 - MLT1C LTR MaLR -1 466 165 2301 126 19 13 chr9 95350291 95350663 -22511964 - THE1C LTR MaLR 0 375 2 1621 219 76 21 chr9 95350663 95350814 -22511813 - MLT1C LTR MaLR -302 165 24 849 101 40 0 chr9 95351085 95351234 -22511393 + GA-rich Low_complexity Low_complexity 2 156 0 397 216 59 0 chr9 95351879 95351981 -22510646 - MER45C DNA AcHobo -44 909 802 1322 157 43 4 chr9 95351986 95352419 -22510208 - LTR54 LTR ERV1 0 510 1 * 1395 311 91 46 chr9 95352419 95353174 -22509453 - MER45C DNA AcHobo -163 790 1 2016 108 0 51 chr9 95354126 95354440 -22508187 + AluY SINE Alu 1 298 -13 21 43 0 0 chr9 95354440 95354463 -22508164 + AT_rich Low_complexity Low_complexity 1 23 0 1933 164 0 7 chr9 95354500 95354805 -22507822 - AluSx SINE Alu -9 303 1 637 292 98 44 chr9 95355576 95356007 -22506620 - L2 LINE L2 -66 3247 2777 770 122 61 0 chr9 95356049 95356164 -22506463 - AluSc SINE Alu -16 293 172 480 301 117 19 chr9 95356181 95356392 -22506235 - L2 LINE L2 -610 2704 2462 1575 176 3 62 chr9 95356392 95356716 -22505911 + AluJo SINE Alu 1 305 -7 480 301 117 19 chr9 95356716 95356760 -22505867 - L2 LINE L2 -852 2462 2424 376 361 26 16 chr9 95357068 95357259 -22505368 - MIR SINE MIR -50 212 20 505 319 67 44 chr9 95358020 95358438 -22504189 + L2 LINE L2 2607 3047 -266 1121 221 84 47 chr9 95358484 95358908 -22503719 + MLT2B1 LTR ERVL 3 534 -20 414 107 24 24 chr9 95358913 95358997 -22503630 + CT-rich Low_complexity Low_complexity 1 84 0 1534 166 40 24 chr9 95359013 95359309 -22503318 - MER2 DNA MER2_type -41 304 4 242 139 0 0 chr9 95359313 95359349 -22503278 + MLT2B1 LTR ERVL 483 518 -2 1839 113 0 4 chr9 95359409 95359656 -22502971 + AluSx SINE Alu 21 266 -46 30 27 0 0 chr9 95359657 95359694 -22502933 + AT_rich Low_complexity Low_complexity 1 37 0 312 236 36 36 chr9 95359755 95359865 -22502762 - MLT1J2 LTR MaLR -78 372 263 3742 231 19 7 chr9 95360017 95360982 -22501645 - L1MA9 LINE L1 -157 6155 5180 3722 264 56 30 chr9 95360983 95362180 -22500447 + HERVL-B1 LTR ERVL 25 1260 -4394 3023 92 22 22 chr9 95362180 95362624 -22500003 - MLT2A1 LTR ERVL 0 444 1 3722 264 56 30 chr9 95362624 95362723 -22499904 + HERVL-B1 LTR ERVL 1260 1355 -4299 * 8264 159 22 11 chr9 95362719 95364154 -22498473 + ERVL-B1 LTR ERVL 4312 5762 -2 761 187 88 6 chr9 95364001 95364172 -22498455 + Ricksha DNA DNA 185 369 -2877 * 960 181 24 0 chr9 95364182 95364348 -22498279 - AluJ SINE Alu -11 301 132 603 133 17 8 chr9 95364358 95364478 -22498149 + CT-rich Low_complexity Low_complexity 1 121 0 609 216 0 8 chr9 95364478 95364603 -22498024 - AluJ SINE Alu -177 125 2 1226 245 4 101 chr9 95364606 95365071 -22497556 + MLT2B1 LTR ERVL 90 509 -11 23 33 0 0 chr9 95365749 95365779 -22496848 + AT_rich Low_complexity Low_complexity 1 30 0 5375 248 58 39 chr9 95365788 95368837 -22493790 - L1MEc LINE L1 -1541 4674 1576 785 164 0 50 chr9 95368845 95368985 -22493642 - AluJ SINE Alu -169 133 1 30 0 0 0 chr9 95368990 95369020 -22493607 + AT_rich Low_complexity Low_complexity 1 30 0 2715 276 37 26 chr9 95369066 95369962 -22492665 - L1MEc LINE L1 -5461 935 30 311 320 82 55 chr9 95370183 95370474 -22492153 - L3 LINE CR1 -607 970 672 21 82 0 0 chr9 95371083 95371132 -22491495 + AT_rich Low_complexity Low_complexity 1 49 0 291 373 47 0 chr9 95371424 95371593 -22491034 - MIR SINE MIR -38 224 48 399 314 44 25 chr9 95371793 95371952 -22490675 + MER5B DNA MER1_type 17 178 0 369 362 111 53 chr9 95371967 95372608 -22490019 - L2 LINE L2 -438 2876 2199 285 98 0 0 chr9 95372626 95372667 -22489960 + (TGG)n Simple_repeat Simple_repeat 1 41 0 1613 181 16 26 chr9 95372681 95372990 -22489637 - AluJo SINE Alu 0 312 7 217 349 72 0 chr9 95373650 95373733 -22488894 - MIR3 SINE MIR -30 178 90 28 61 0 0 chr9 95374964 95375013 -22487614 + AT_rich Low_complexity Low_complexity 1 49 0 182 261 174 14 chr9 95375185 95375254 -22487373 + L2 LINE L2 3179 3258 -14 1158 251 75 62 chr9 95375619 95376180 -22486447 + MLT1L LTR MaLR 48 615 0 235 376 60 0 chr9 95376780 95376897 -22485730 - L3 LINE CR1 -83 1494 1371 918 206 39 0 chr9 95377004 95377184 -22485443 + MER20 DNA MER1_type 33 219 0 2203 117 10 0 chr9 95377658 95377967 -22484660 - AluSx SINE Alu 0 312 1 346 318 52 58 chr9 95378406 95378560 -22484067 + MIR3 SINE MIR 32 184 -24 187 318 118 12 chr9 95378960 95379045 -22483582 + MIR3 SINE MIR 6 99 -109 21 0 0 0 chr9 95379143 95379164 -22483463 + AT_rich Low_complexity Low_complexity 1 21 0 472 257 84 44 chr9 95379196 95379422 -22483205 - MLT1K LTR MaLR -8 580 346 275 376 37 12 chr9 95380003 95380165 -22482462 - MIR3 SINE MIR -9 199 34 211 372 47 33 chr9 95380156 95380557 -22482070 + L2 LINE L2 2641 3046 -226 * 255 279 58 10 chr9 95380969 95381073 -22481554 + MER117 DNA MER1_type 75 183 -14 474 18 0 0 chr9 95382009 95382064 -22480563 + (TG)n Simple_repeat Simple_repeat 2 56 0 2197 76 7 0 chr9 95382282 95382559 -22480068 + AluSp SINE Alu 1 279 -34 221 180 20 0 chr9 95382559 95382609 -22480018 + GA-rich Low_complexity Low_complexity 2 52 0 404 302 52 52 chr9 95382991 95383239 -22479388 - L2 LINE L2 -621 2693 2446 1826 141 26 3 chr9 95383353 95383665 -22478962 + L1MA4 LINE L1 5976 6294 -6 2761 248 76 77 chr9 95384606 95386773 -22475854 + L1MEc LINE L1 1887 3993 -2222 4861 41 0 2 chr9 95386773 95387348 -22475279 + L1PA5 LINE L1 5563 6145 -9 2761 248 76 77 chr9 95387348 95388375 -22474252 + L1MEc LINE L1 3993 5020 -1195 * 3426 236 32 10 chr9 95388368 95389301 -22473326 + L1MB5 LINE L1 5280 6231 -12 1748 235 76 26 chr9 95389328 95390026 -22472601 + L1ME1 LINE L1 4328 5060 -1086 4377 100 36 9 chr9 95390150 95390494 -22472133 - L1PB1 LINE L1 -1 6150 5817 396 71 0 0 chr9 95390494 95390550 -22472077 + (TG)n Simple_repeat Simple_repeat 2 57 0 4377 100 36 9 chr9 95390550 95390866 -22471761 - L1PB1 LINE L1 -334 5817 5472 9700 61 1 0 chr9 95390878 95392118 -22470509 - L1PA6 LINE L1 -1784 4362 3122 7987 49 0 4 chr9 95392117 95393912 -22468715 + L1PA6 LINE L1 4367 6154 0 2407 187 15 6 chr9 95393913 95394618 -22468009 - L1P5 LINE L1 -686 5465 4751 453 267 14 42 chr9 95394614 95394831 -22467796 + L1ME1 LINE L1 5050 5260 -886 * 273 243 0 0 chr9 95394831 95394901 -22467726 + (TA)n Simple_repeat Simple_repeat 1 70 0 2010 258 32 10 chr9 95394952 95395549 -22467078 + L1ME1 LINE L1 5365 5974 -192 467 108 0 36 chr9 95395620 95395703 -22466924 - AluSg/x SINE Alu -41 271 192 1549 95 5 5 chr9 95395707 95395918 -22466709 - AluSx SINE Alu -93 219 9 433 200 1 0 chr9 95395930 95396019 -22466608 + L1ME1 LINE L1 6051 6140 -30 325 58 39 0 chr9 95397096 95397148 -22465479 + (TC)n Simple_repeat Simple_repeat 1 54 0 517 281 83 68 chr9 95397162 95397389 -22465238 - MLT1H LTR MaLR -259 290 57 3568 98 14 0 chr9 95397389 95397889 -22464738 - MER84 LTR ERV1 0 507 1 517 281 83 68 chr9 95397889 95397939 -22464688 - MLT1H LTR MaLR -492 57 9 220 288 85 10 chr9 95398492 95398616 -22464011 - MIR SINE MIR -51 157 22 1992 66 8 12 chr9 95398676 95398933 -22463694 - AluY SINE Alu -1 310 55 412 299 39 24 chr9 95399570 95399697 -22462930 + MIR SINE MIR 17 145 -63 280 303 34 11 chr9 95399784 95399873 -22462754 + L3 LINE CR1 1258 1348 -229 1058 315 57 23 chr9 95399980 95400504 -22462123 - L2 LINE L2 -567 2747 2206 205 284 176 14 chr9 95400505 95400653 -22461974 - L2 LINE L2 -226 3046 2875 1347 245 183 37 chr9 95401277 95401823 -22460804 - MLT1E2 LTR MaLR 0 626 1 383 302 35 16 chr9 95401991 95402164 -22460463 + MIR SINE MIR 15 195 -64 305 270 20 20 chr9 95402226 95402326 -22460301 - MIR SINE MIR -60 148 49 2321 68 0 0 chr9 95403025 95403304 -22459323 + AluY SINE Alu 1 279 -32 288 0 0 0 chr9 95403319 95403351 -22459276 + (TAA)n Simple_repeat Simple_repeat 2 33 0 1066 163 31 0 chr9 95403998 95404194 -22458433 - L1MA9 LINE L1 -507 5805 5604 * 1699 196 34 70 chr9 95404182 95404651 -22457976 + L1MA9 LINE L1 5823 6274 -38 465 366 75 0 chr9 95404870 95405031 -22457596 + MER91A DNA MER1_type 4 176 -20 192 182 34 0 chr9 95405650 95405738 -22456889 + (TA)n Simple_repeat Simple_repeat 2 92 0 297 0 0 0 chr9 95405770 95405803 -22456824 + (TG)n Simple_repeat Simple_repeat 2 34 0 693 186 0 90 chr9 95405807 95405963 -22456664 - MLT1D LTR MaLR -363 142 1 257 106 0 21 chr9 95405977 95406024 -22456603 + (TA)n Simple_repeat Simple_repeat 1 46 0 23 0 0 0 chr9 95406051 95406074 -22456553 + AT_rich Low_complexity Low_complexity 1 23 0 1973 196 50 77 chr9 95406221 95406740 -22455887 - MLT1D LTR MaLR 0 505 1 640 209 37 18 chr9 95406808 95406971 -22455656 + MIR SINE MIR 85 250 -12 227 232 74 11 chr9 95407181 95407276 -22455351 + L1ME4a LINE L1 6020 6120 -1 188 254 0 14 chr9 95407295 95407366 -22455261 + (TA)n Simple_repeat Simple_repeat 1 70 0 25919 136 10 17 chr9 95408096 95414521 -22448106 + L1PA8A LINE L1 2 6444 -2 326 278 89 41 chr9 95414546 95414715 -22447912 + MIR SINE MIR 49 225 -37 * 512 327 94 9 chr9 95414696 95414919 -22447708 + MIR SINE MIR 17 258 -4 182 234 21 0 chr9 95415669 95415716 -22446911 + MIR SINE MIR 102 149 -113 236 296 15 22 chr9 95415746 95415881 -22446746 + CT-rich Low_complexity Low_complexity 2 135 0 181 265 59 44 chr9 95416305 95416373 -22446254 - L2 LINE L2 0 3313 3245 642 317 57 13 chr9 95417445 95417675 -22444952 - MIR SINE MIR 0 262 23 256 24 24 24 chr9 95418606 95418648 -22443979 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 400 70 0 18 chr9 95418927 95418984 -22443643 + U2 snRNA snRNA 1 56 -132 197 302 0 16 chr9 95419056 95419119 -22443508 + MIR SINE MIR 69 130 -132 492 308 81 18 chr9 95419180 95419401 -22443226 - LTR16A1 LTR ERVL -2 455 221 3555 159 32 31 chr9 95419401 95420111 -22442516 - L1MA6 LINE L1 -74 6226 5516 938 191 0 6 chr9 95420111 95420273 -22442354 + FRAM SINE Alu 1 158 -18 3318 157 30 26 chr9 95420293 95421135 -22441492 - L1MA6 LINE L1 -743 5403 4679 288 236 24 57 chr9 95421076 95421199 -22441428 + L1MB7 LINE L1 6057 6175 -9 * 559 340 19 19 chr9 95421199 95421408 -22441219 + L1MEd LINE L1 572 780 -5339 535 226 24 42 chr9 95421427 95421595 -22441032 + MIR SINE MIR 98 262 0 23 54 0 0 chr9 95421934 95421971 -22440656 + AT_rich Low_complexity Low_complexity 1 37 0 281 355 16 0 chr9 95422164 95422285 -22440342 - L1MEd LINE L1 -5749 370 248 236 309 66 66 chr9 95422900 95423052 -22439575 + L2 LINE L2 3121 3272 0 211 229 49 8 chr9 95423267 95423370 -22439257 + (TA)n Simple_repeat Simple_repeat 2 112 -16 303 28 0 0 chr9 95423370 95423406 -22439221 + (TG)n Simple_repeat Simple_repeat 2 37 0 211 229 49 8 chr9 95423406 95423424 -22439203 + (TA)n Simple_repeat Simple_repeat 112 128 0 297 275 301 10 chr9 95423470 95423663 -22438964 + MIR SINE MIR 1 249 -13 211 388 78 0 chr9 95424463 95424566 -22438061 + MIR SINE MIR 64 174 -88 1072 170 10 5 chr9 95424998 95425052 -22437575 - MLT2C2 LTR ERVL -257 207 155 207 0 0 0 chr9 95425052 95425075 -22437552 + (CA)n Simple_repeat Simple_repeat 2 24 0 1072 170 10 5 chr9 95425075 95425226 -22437401 - MLT2C2 LTR ERVL -309 155 1 250 332 106 10 chr9 95425253 95425452 -22437175 + L3 LINE CR1 1187 1404 -173 289 289 60 0 chr9 95426031 95426114 -22436513 + MIR SINE MIR 61 148 -114 2442 90 3 0 chr9 95426408 95426720 -22435907 + AluSp SINE Alu 1 313 0 379 350 119 9 chr9 95427458 95427684 -22434943 - MIR SINE MIR 0 262 12 352 326 73 41 chr9 95427692 95427910 -22434717 + MIR SINE MIR 26 250 -12 1626 229 112 47 chr9 95428422 95429085 -22433542 - MER50 LTR ERV1 -19 715 10 1206 230 119 60 chr9 95429253 95429688 -22432939 + MLT2B1 LTR ERVL 1 461 -59 21 0 0 0 chr9 95430344 95430365 -22432262 + AT_rich Low_complexity Low_complexity 1 21 0 1230 204 99 24 chr9 95431741 95432075 -22430552 - MLT1B LTR MaLR 0 390 32 432 289 61 45 chr9 95432828 95433062 -22429565 - MIR SINE MIR -5 257 23 571 181 0 0 chr9 95433482 95433599 -22429028 + L1PB4 LINE L1 6050 6166 0 988 228 53 61 chr9 95434407 95435222 -22427405 + L1MC4 LINE L1 5900 6620 -1188 301 268 14 65 chr9 95435203 95435341 -22427286 + L1MC4 LINE L1 6615 6745 -1297 * 3024 250 72 43 chr9 95485358 95486465 -22376162 + L1MC4a LINE L1 6670 7808 0 330 132 0 0 chr9 95487194 95487247 -22375380 + (CA)n Simple_repeat Simple_repeat 1 53 0 523 53 67 0 chr9 95487619 95487694 -22374933 - L1PA13 LINE L1 -6 6157 6078 264 333 12 0 chr9 95488765 95488846 -22373781 + MIR SINE MIR 3 84 -178 296 95 0 0 chr9 95488892 95488934 -22373693 - MADE1 DNA Mariner -38 42 1 186 284 30 0 chr9 95488934 95489001 -22373626 + MIR SINE MIR 156 224 -38 24 0 0 0 chr9 95489123 95489147 -22373480 + AT_rich Low_complexity Low_complexity 1 24 0 2006 139 3 7 chr9 95489972 95490266 -22372361 + AluSx SINE Alu 1 293 -19 195 293 26 103 chr9 95491491 95491607 -22371020 - L2 LINE L2 0 3313 3207 335 250 50 0 chr9 95492531 95492611 -22370016 - MER91C DNA MER1_type -38 102 19 380 356 85 29 chr9 95493518 95493928 -22368699 - L2 LINE L2 -48 3265 2833 424 353 39 23 chr9 95494013 95494271 -22368356 - L2 LINE L2 -727 2587 2326 460 293 0 58 chr9 95495757 95495948 -22366679 + MLT1K LTR MaLR 401 580 -8 22 35 0 0 chr9 95496923 95496952 -22365675 + AT_rich Low_complexity Low_complexity 1 29 0 468 298 146 19 chr9 95497000 95497205 -22365422 - MIR SINE MIR -12 250 20 186 292 46 15 chr9 95497207 95497272 -22365355 - MIR SINE MIR -79 183 117 1359 210 68 60 chr9 95497279 95497540 -22365087 - MSTD LTR MaLR -11 385 119 2422 122 8 19 chr9 95497540 95497908 -22364719 + THE1B LTR MaLR 1 364 0 1359 210 68 60 chr9 95497908 95498027 -22364600 - MSTD LTR MaLR -277 119 2 334 331 97 6 chr9 95498984 95499159 -22363468 - MIR SINE MIR -70 192 2 464 370 34 32 chr9 95500042 95500510 -22362117 + MLT1J LTR MaLR 43 511 0 180 385 0 0 chr9 95500720 95500803 -22361824 + MIR SINE MIR 31 113 -149 230 229 98 16 chr9 95501824 95501885 -22360742 - L2 LINE L2 -1 3271 3206 951 293 37 50 chr9 95502184 95502503 -22360124 + MLT1I LTR MaLR 88 390 -19 239 0 32 0 chr9 95502592 95502623 -22360004 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 7591 33 0 0 chr9 95502625 95503747 -22358880 - L1PA3 LINE L1 -5 6150 5029 6024 14 0 0 chr9 95503747 95504444 -22358183 + L1PA3 LINE L1 4319 5015 -1131 484 278 145 10 chr9 95505346 95505542 -22357085 + MIR SINE MIR 35 256 -6 428 321 112 22 chr9 95505814 95506091 -22356536 + L3 LINE CR1 1233 1534 -43 253 358 46 0 chr9 95506494 95506603 -22356024 + MIR SINE MIR 25 138 -70 250 323 21 0 chr9 95506629 95506725 -22355902 + MIR3 SINE MIR 101 198 -10 277 364 36 0 chr9 95506739 95506849 -22355778 - L2 LINE L2 -12 3260 3147 2055 118 0 21 chr9 95507093 95507408 -22355219 + AluSq SINE Alu 3 311 0 428 250 46 59 chr9 95507440 95507592 -22355035 - MIR SINE MIR 0 262 113 297 330 9 0 chr9 95507612 95507718 -22354909 + MER117 DNA MER1_type 30 136 -61 596 332 12 58 chr9 95507723 95508051 -22354576 - L2 LINE L2 -11 3302 2990 378 320 40 7 chr9 95508244 95508394 -22354233 + MIR SINE MIR 79 233 -29 2243 113 3 0 chr9 95508736 95509037 -22353590 - AluSx SINE Alu -10 302 1 23 0 0 0 chr9 95509046 95509069 -22353558 + AT_rich Low_complexity Low_complexity 1 23 0 377 252 89 8 chr9 95509346 95509469 -22353158 - MIR SINE MIR -13 249 117 247 357 57 7 chr9 95509472 95509612 -22353015 - MIR SINE MIR -113 149 3 199 376 0 43 chr9 95509935 95510052 -22352575 + MIR3 SINE MIR 3 114 -94 335 228 60 54 chr9 95510219 95510386 -22352241 - MIR3 SINE MIR -14 194 27 432 0 0 0 chr9 95510912 95510960 -22351667 + (CATAT)n Simple_repeat Simple_repeat 5 52 0 296 319 71 53 chr9 95511044 95511213 -22351414 - MIR SINE MIR -70 192 21 2777 116 14 14 chr9 95511483 95511906 -22350721 + L1PA11 LINE L1 5741 6163 -11 259 271 179 21 chr9 95512820 95512960 -22349667 - MER103 DNA DNA -2 164 3 399 286 111 54 chr9 95513209 95513506 -22349121 - L3 LINE CR1 -120 1457 1144 1840 19 0 0 chr9 95513532 95513564 -22349063 - L1PA4 LINE L1 -265 5890 5859 585 261 65 19 chr9 95513564 95513741 -22348886 - L1MC4 LINE L1 -2184 5858 5664 785 11 0 0 chr9 95513741 95513831 -22348796 + L1PA4 LINE L1 6059 6151 -4 585 261 65 19 chr9 95513831 95513913 -22348714 - L1MC4 LINE L1 -2378 5664 5587 342 409 62 32 chr9 95514789 95515158 -22347469 - L2 LINE L2 -7 3265 2886 664 255 25 6 chr9 95515287 95515444 -22347183 + MER5A DNA MER1_type 30 189 0 2451 117 8 16 chr9 95516660 95517027 -22345600 + THE1B LTR MaLR 1 364 0 9556 114 52 36 chr9 95517029 95518583 -22344044 + THE1B-int LTR MaLR 3 1580 0 2171 109 0 3 chr9 95518583 95518877 -22343750 + THE1B LTR MaLR 1 293 -71 2004 88 32 0 chr9 95519409 95519694 -22342933 + L1PA13 LINE L1 5865 6158 -5 203 257 71 33 chr9 95519895 95519999 -22342628 + MER5B DNA MER1_type 57 176 -13 1657 85 0 0 chr9 95520113 95520337 -22342290 + L1PA8 LINE L1 5948 6171 -1 2268 107 3 0 chr9 95520366 95520666 -22341961 + AluY SINE Alu 1 301 -10 222 37 0 0 chr9 95520759 95520786 -22341841 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 363 44 0 0 chr9 95521367 95521412 -22341215 + (TG)n Simple_repeat Simple_repeat 2 46 0 279 253 253 23 chr9 95521887 95522061 -22340566 - MIR SINE MIR -2 260 47 272 346 0 55 chr9 95522128 95522345 -22340282 + L3 LINE CR1 1278 1562 -15 337 298 48 32 chr9 95522654 95522778 -22339849 + MIR SINE MIR 131 256 -6 895 314 127 10 chr9 95522794 95523195 -22339432 + LTR16A LTR ERVL 3 450 0 278 333 36 8 chr9 95524022 95524188 -22338439 - MIR SINE MIR -11 251 47 201 239 0 0 chr9 95524293 95524339 -22338288 + GA-rich Low_complexity Low_complexity 2 47 0 738 261 31 54 chr9 95525801 95526062 -22336565 + MIR SINE MIR 8 262 0 490 291 0 47 chr9 95526097 95526269 -22336358 - L1PA16 LINE L1 -16 6150 5987 872 191 59 34 chr9 95526378 95526582 -22336045 + MER63A DNA MER1_type 1 209 -1 423 265 15 8 chr9 95526845 95526977 -22335650 - MER103 DNA DNA -33 133 1 826 355 106 43 chr9 95527373 95528459 -22334168 + L2 LINE L2 1218 2420 -894 2573 21 0 0 chr9 95528459 95528746 -22333881 - AluYb8 SINE Alu 0 318 32 826 355 106 43 chr9 95528746 95529106 -22333521 + L2 LINE L2 2420 2756 -558 369 0 0 0 chr9 95529204 95529245 -22333382 + (CA)n Simple_repeat Simple_repeat 2 42 0 275 325 26 0 chr9 95529252 95529329 -22333298 + L2 LINE L2 2980 3058 -214 1622 285 117 80 chr9 95529655 95530826 -22331801 + HAL1 LINE L1 1 1127 -1380 1902 168 0 3 chr9 95530826 95531135 -22331492 + AluJb SINE Alu 1 308 -4 1622 285 117 80 chr9 95531135 95532381 -22330246 + HAL1 LINE L1 1127 2507 0 392 306 57 0 chr9 95533062 95533186 -22329441 + L2 LINE L2 3138 3268 -4 497 385 20 0 chr9 95533295 95533490 -22329137 + MIR SINE MIR 6 204 -58 252 246 313 8 chr9 95534117 95534251 -22328376 + MIR SINE MIR 88 262 0 487 180 170 0 chr9 95534959 95535059 -22327568 - Tigger1 DNA MER2_type -1 2417 2301 16149 26 4 0 chr9 95535059 95536991 -22325636 - L1PA4 LINE L1 -1482 4664 2726 7415 37 3 0 chr9 95536992 95538464 -22324163 + L1PA4 LINE L1 4678 6152 -3 2910 151 39 6 chr9 95538469 95538567 -22324060 - Tigger1 DNA MER2_type -105 2313 2220 1685 189 0 17 chr9 95538567 95538863 -22323764 + AluSq SINE Alu 1 291 -22 2910 151 39 6 chr9 95538863 95539300 -22323327 - Tigger1 DNA MER2_type -198 2220 1760 874 113 0 16 chr9 95539301 95539425 -22323202 + AluSq/x SINE Alu 1 122 -190 315 122 0 0 chr9 95539441 95539490 -22323137 + (TG)n Simple_repeat Simple_repeat 2 50 0 313 296 23 0 chr9 95539496 95539584 -22323043 - L1MC4 LINE L1 -1339 6703 6614 232 282 0 14 chr9 95539586 95539728 -22322899 + (TA)n Simple_repeat Simple_repeat 2 141 0 243 0 0 0 chr9 95539728 95539755 -22322872 + (CA)n Simple_repeat Simple_repeat 2 28 0 869 180 20 7 chr9 95539760 95539910 -22322717 + AluSg/x SINE Alu 134 285 -27 180 0 0 0 chr9 95539910 95539930 -22322697 + (TTAAA)n Simple_repeat Simple_repeat 3 22 0 2162 105 6 0 chr9 95539930 95540244 -22322383 - Tigger1 DNA MER2_type -649 1769 1454 1650 187 74 28 chr9 95540247 95540637 -22321990 + L1PA16 LINE L1 5759 6166 0 7853 162 41 9 chr9 95540639 95542042 -22320585 - Tigger1 DNA MER2_type -968 1450 2 565 175 0 0 chr9 95542119 95542222 -22320405 + Ricksha DNA DNA 1 103 -3143 366 125 0 0 chr9 95542227 95542283 -22320344 + ERVL LTR ERVL 5643 5698 -66 421 277 8 8 chr9 95543504 95543634 -22318993 + L1MC4a LINE L1 6443 6572 -1236 747 241 74 25 chr9 95543636 95543839 -22318788 - MLT1G LTR MaLR -2 588 376 586 293 54 22 chr9 95543840 95544062 -22318565 - MLT1G LTR MaLR -342 248 20 216 301 14 0 chr9 95544098 95544171 -22318456 + (TA)n Simple_repeat Simple_repeat 1 74 0 2683 277 35 55 chr9 95544171 95545070 -22317557 + L1MC4 LINE L1 6595 7461 -581 2313 173 21 2 chr9 95545070 95545498 -22317129 + L1MC1 LINE L1 5895 6330 -3 2683 277 35 55 chr9 95545498 95545928 -22316699 + L1MC4 LINE L1 7461 7898 -144 669 189 59 12 chr9 95545992 95546161 -22316466 + MLT1B LTR MaLR 1 177 -213 633 203 235 64 chr9 95546310 95546561 -22316066 + MLT1B LTR MaLR 174 467 0 249 262 0 0 chr9 95546574 95546635 -22315992 + L1MC4 LINE L1 7977 8037 -5 1129 88 5 74 chr9 95546639 95546856 -22315771 + L1MA8 LINE L1 6086 6287 -4 2190 114 13 32 chr9 95547205 95547521 -22315106 + AluSx SINE Alu 1 310 -2 641 299 131 51 chr9 95547885 95548466 -22314161 + L2 LINE L2 2685 3311 -2 3590 189 56 44 chr9 95548479 95549370 -22313257 + L1MD2 LINE L1 5444 6351 -8 299 225 47 8 chr9 95549445 95549574 -22313053 + (TA)n Simple_repeat Simple_repeat 1 134 0 244 288 50 12 chr9 95549581 95549661 -22312966 + MIR SINE MIR 180 262 0 205 301 87 39 chr9 95549668 95549771 -22312856 + L2 LINE L2 3163 3270 -2 387 313 27 20 chr9 95549886 95550033 -22312594 + MIR3 SINE MIR 60 207 -1 2506 65 3 0 chr9 95550988 95551297 -22311330 - AluY SINE Alu -1 310 1 253 355 145 8 chr9 95552271 95552395 -22310232 - MER5A DNA MER1_type -48 141 1 453 278 11 28 chr9 95553059 95553239 -22309388 + (TTCA)n Simple_repeat Simple_repeat 1 177 0 2120 114 7 0 chr9 95553348 95553726 -22308901 - AluSq SINE Alu 0 380 1 247 352 0 38 chr9 95554046 95554151 -22308476 + L2 LINE L2 3172 3272 -41 462 18 0 0 chr9 95554605 95554660 -22307967 + (TG)n Simple_repeat Simple_repeat 2 56 0 231 353 83 23 chr9 95555325 95555458 -22307169 + L2 LINE L2 3089 3229 -43 205 264 33 11 chr9 95555501 95555592 -22307035 + A-rich Low_complexity Low_complexity 2 94 0 217 351 53 11 chr9 95556300 95556394 -22306233 - L2 LINE L2 -19 3294 3197 * 315 338 70 0 chr9 95556388 95556530 -22306097 - MIR SINE MIR -81 181 30 2000 120 150 5 chr9 95557890 95558257 -22304370 + MSTA LTR MaLR 1 420 -8 7375 158 76 40 chr9 95558259 95558744 -22303883 + MSTA-int LTR MaLR 19 485 -1095 2207 125 6 10 chr9 95558744 95559056 -22303571 + AluSx SINE Alu 1 311 -1 7375 158 76 40 chr9 95559056 95560078 -22302549 + MSTA-int LTR MaLR 485 1580 0 2130 147 98 8 chr9 95560082 95560471 -22302156 + MSTA LTR MaLR 5 428 0 209 413 23 12 chr9 95560659 95560831 -22301796 - MER5B DNA MER1_type -1 177 4 4281 189 7 12 chr9 95561375 95562933 -22299694 + L1PA16 LINE L1 4524 6073 -93 36 40 0 0 chr9 95562978 95563028 -22299599 + AT_rich Low_complexity Low_complexity 1 50 0 293 200 0 12 chr9 95563047 95563127 -22299500 + L1PA16 LINE L1 6087 6165 -1 748 176 57 13 chr9 95563255 95563414 -22299213 - MER20 DNA MER1_type -53 166 1 340 399 0 0 chr9 95563690 95563811 -22298816 + L2 LINE L2 3180 3303 -10 216 0 0 0 chr9 95563811 95563835 -22298792 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 340 399 0 0 chr9 95563835 95563846 -22298781 + L2 LINE L2 3302 3312 -1 284 350 76 73 chr9 95563865 95564208 -22298419 - L2 LINE L2 -11 3261 2918 226 359 68 21 chr9 95564305 95564497 -22298130 - L2 LINE L2 -461 2853 2653 2247 120 7 0 chr9 95564573 95564873 -22297754 - AluSx SINE Alu -10 302 1 186 337 11 34 chr9 95566294 95566383 -22296244 + MIR SINE MIR 175 261 -1 198 118 0 0 chr9 95566395 95566429 -22296198 + (TTA)n Simple_repeat Simple_repeat 1 34 0 1694 170 84 14 chr9 95567199 95567546 -22295081 + THE1C LTR MaLR 5 375 0 486 267 49 22 chr9 95569414 95569591 -22293036 + L1MC4a LINE L1 6815 7001 -807 198 103 0 0 chr9 95569591 95569620 -22293007 + (TGAA)n Simple_repeat Simple_repeat 2 30 0 486 267 49 22 chr9 95569620 95569667 -22292960 + L1MC4a LINE L1 7001 7045 -763 1791 201 114 74 chr9 95569702 95570273 -22292354 - MER6A DNA MER2_type -2 603 10 1160 235 61 65 chr9 95570281 95570754 -22291873 - MLT1D LTR MaLR -32 473 3 580 240 86 0 chr9 95570756 95570989 -22291638 + L1MC4 LINE L1 7119 7371 -671 * 698 293 47 42 chr9 95570987 95571601 -22291026 + L1MEc LINE L1 1202 1818 -4578 22 35 0 0 chr9 95571614 95571643 -22290984 + AT_rich Low_complexity Low_complexity 1 29 0 1249 238 53 19 chr9 95571665 95572026 -22290601 + L1MEc LINE L1 59 431 -5965 660 261 9 5 chr9 95572017 95572232 -22290395 + L1M4 LINE L1 4537 4752 -1394 * 1488 91 32 9 chr9 95572498 95572717 -22289910 - MER30 DNA MER1_type 0 230 7 937 143 55 206 chr9 95572903 95573289 -22289338 - MER4C LTR ERV1 -2 463 171 1965 138 3 16 chr9 95573289 95573593 -22289034 + AluSg SINE Alu 1 300 -10 937 143 55 206 chr9 95573593 95573716 -22288911 - MER4C LTR ERV1 -294 171 31 3511 55 0 7 chr9 95573716 95574167 -22288460 - LTR7 LTR ERV1 -2 448 1 2384 64 59 13 chr9 95574167 95574540 -22288087 - HERVH LTR ERV1 0 7713 7324 1352 110 18 9 chr9 95574540 95574758 -22287869 - HERVH LTR ERV1 -1894 5819 5600 4175 129 3 6 chr9 95574759 95575423 -22287204 - HERVH LTR ERV1 -2564 5149 4488 3168 117 0 6 chr9 95575425 95575930 -22286697 - HERVH LTR ERV1 -3720 3993 3492 638 219 7 7 chr9 95575920 95576071 -22286556 - HERVH LTR ERV1 -4423 3290 3140 * 17840 87 28 11 chr9 95576217 95578953 -22283674 - HERVH LTR ERV1 -4931 2782 1 3255 63 16 5 chr9 95578955 95579398 -22283229 - LTR7 LTR ERV1 -2 448 1 316 335 40 6 chr9 95579947 95580120 -22282507 + MIR SINE MIR 65 243 -19 312 220 22 33 chr9 95580545 95580636 -22281991 - MIR3 SINE MIR -37 171 82 302 227 0 15 chr9 95581189 95581255 -22281372 + L2 LINE L2 3208 3272 0 674 268 119 40 chr9 95582299 95582433 -22280194 + L1ME3A LINE L1 5554 5676 -494 1846 120 4 22 chr9 95582433 95582708 -22279919 + AluSx SINE Alu 34 303 -9 674 268 119 40 chr9 95582708 95582950 -22279677 + L1ME3A LINE L1 5676 5960 -210 210 298 114 38 chr9 95582964 95583095 -22279532 + MIR SINE MIR 28 168 -94 246 269 0 39 chr9 95583249 95583353 -22279274 + CT-rich Low_complexity Low_complexity 4 103 0 305 347 85 48 chr9 95583753 95584271 -22278356 + L2 LINE L2 2631 3181 -132 465 84 0 0 chr9 95585040 95585111 -22277516 + (CA)n Simple_repeat Simple_repeat 2 72 0 223 350 25 0 chr9 95585155 95585235 -22277392 + MIR SINE MIR 48 129 -133 2124 132 0 0 chr9 95636109 95636419 -22226208 - AluSg SINE Alu 0 310 1 377 292 21 42 chr9 95636567 95636711 -22225916 - L2 LINE L2 0 3313 3173 254 247 34 0 chr9 95636714 95636803 -22225824 + (TA)n Simple_repeat Simple_repeat 1 92 0 291 193 0 0 chr9 95636972 95637029 -22225598 + L1 LINE L1 4278 4334 -1812 * 1341 121 0 0 chr9 95637023 95637221 -22225406 - L1MA2 LINE L1 -34 6270 6073 4972 191 36 6 chr9 95637238 95639052 -22223575 + L1PA16 LINE L1 4303 6166 0 1671 224 19 74 chr9 95640076 95640603 -22222024 + MLT1D LTR MaLR 6 503 -2 316 339 58 12 chr9 95640814 95640985 -22221642 + MIR SINE MIR 84 262 0 385 329 0 60 chr9 95641288 95641504 -22221123 + MIR SINE MIR 56 258 -4 680 269 159 47 chr9 95641535 95641857 -22220770 - MSTD LTR MaLR -7 389 2 197 33 33 0 chr9 95641948 95641978 -22220649 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 707 183 84 14 chr9 95642016 95642229 -22220398 - MER3 DNA MER1_type 0 2611 2384 411 258 0 0 chr9 95642243 95642332 -22220295 - MER81 DNA DNA -21 93 5 6714 76 33 2 chr9 95642357 95644106 -22218521 - L1PA7 LINE L1 0 6154 4370 8290 94 8 1 chr9 95644106 95645285 -22217342 + L1P LINE L1 3138 4325 -1821 652 203 27 0 chr9 95645297 95645445 -22217182 - MER3 DNA MER1_type 0 2386 2235 466 168 112 9 chr9 95645449 95645556 -22217071 - MER3 DNA MER1_type -41 168 51 538 259 59 55 chr9 95646704 95647144 -22215483 + L1MEd LINE L1 1087 1528 -5002 228 276 152 18 chr9 95647487 95647704 -22214923 + L1MEd LINE L1 1795 2040 -4500 255 125 0 0 chr9 95647972 95648012 -22214615 + (A)n Simple_repeat Simple_repeat 1 40 0 295 275 132 27 chr9 95648080 95648338 -22214289 + L1MEd LINE L1 3125 3409 -3131 331 200 35 0 chr9 95648368 95648453 -22214174 + L1PA16 LINE L1 6079 6166 0 417 303 55 28 chr9 95649021 95649311 -22213316 + L1MEd LINE L1 4259 4556 -1984 696 74 0 0 chr9 95649342 95649437 -22213190 + (GGAA)n Simple_repeat Simple_repeat 4 98 0 235 234 11 11 chr9 95649874 95649968 -22212659 + (TG)n Simple_repeat Simple_repeat 1 94 0 242 321 52 41 chr9 95649971 95650335 -22212292 + L1MEd LINE L1 5023 5390 -1150 3823 222 50 32 chr9 95650449 95652173 -22210454 + L1MB7 LINE L1 4427 6175 -9 22 70 0 0 chr9 95652229 95652272 -22210355 + AT_rich Low_complexity Low_complexity 1 43 0 245 291 151 35 chr9 95652595 95652767 -22209860 - MIR SINE MIR -16 246 55 4037 135 30 11 chr9 95652803 95653530 -22209097 + L1MA5A LINE L1 5556 6296 -1 637 73 0 83 chr9 95653645 95653754 -22208873 + L1PA10 LINE L1 6069 6168 0 27 29 0 0 chr9 95653791 95653825 -22208802 + AT_rich Low_complexity Low_complexity 1 34 0 1808 136 7 14 chr9 95653827 95654122 -22208505 - AluSx SINE Alu -19 293 1 21 0 0 0 chr9 95654170 95654191 -22208436 + AT_rich Low_complexity Low_complexity 1 21 0 2115 127 3 3 chr9 95654218 95654517 -22208110 + AluSx SINE Alu 1 299 -13 186 43 0 0 chr9 95655498 95655521 -22207106 + (TGAA)n Simple_repeat Simple_repeat 3 25 0 286 242 15 0 chr9 95655648 95655714 -22206913 - MIR SINE MIR -63 145 87 314 324 38 9 chr9 95655965 95656070 -22206557 + L1M2a LINE L1 2 109 -7059 14800 195 35 14 chr9 95656922 95658832 -22203795 - L1PB1 LINE L1 -4 6863 4995 189 0 0 0 chr9 95658832 95658853 -22203774 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 14800 195 35 14 chr9 95658853 95662843 -22199784 - L1PB1 LINE L1 -1872 4995 874 508 296 5 0 chr9 95662821 95663007 -22199620 - L1PB1 LINE L1 -6669 194 8 * 1752 202 29 19 chr9 95663184 95663561 -22199066 - L1MC3 LINE L1 -181 7604 7224 802 284 136 13 chr9 95663819 95664281 -22198346 - LTR33 LTR ERVL -2 519 1 274 313 206 33 chr9 95664353 95664596 -22198031 - L3 LINE CR1 -105 1472 1188 224 260 90 20 chr9 95665071 95665171 -22197456 - MIR SINE MIR -96 166 60 207 0 0 0 chr9 95665846 95665869 -22196758 + (T)n Simple_repeat Simple_repeat 1 23 0 450 127 0 14 chr9 95666126 95666197 -22196430 + MER5B DNA MER1_type 1 70 -108 2036 132 3 7 chr9 95666317 95666627 -22196000 - AluSc SINE Alu 0 309 1 280 257 218 10 chr9 95666646 95666747 -22195880 - MIR3 SINE MIR -47 161 40 220 316 72 72 chr9 95667232 95667371 -22195256 - MIR3 SINE MIR -49 159 21 418 346 28 28 chr9 95667381 95667592 -22195035 + MIR SINE MIR 20 230 -32 248 299 128 26 chr9 95668492 95668609 -22194018 - MIR3 SINE MIR -33 175 47 202 230 20 0 chr9 95668735 95668785 -22193842 + L2 LINE L2 3164 3204 -68 202 243 100 14 chr9 95669292 95669362 -22193265 + MIR SINE MIR 54 129 -79 22 0 0 0 chr9 95669651 95669673 -22192954 + AT_rich Low_complexity Low_complexity 1 22 0 5160 163 27 0 chr9 95669890 95670815 -22191812 - L1MA4A LINE L1 -3 6300 5351 308 281 156 15 chr9 95670928 95671063 -22191564 - L3 LINE CR1 -344 1233 1080 201 161 0 0 chr9 95672312 95672343 -22190284 + (TATG)n Simple_repeat Simple_repeat 4 34 0 360 270 107 34 chr9 95672658 95672808 -22189819 - MIR SINE MIR -65 143 37 378 289 50 41 chr9 95673371 95673492 -22189135 - MIR3 SINE MIR -25 183 62 207 394 50 43 chr9 95673969 95674246 -22188381 - L2 LINE L2 -337 2977 2699 256 321 18 143 chr9 95674743 95675079 -22187548 + L2 LINE L2 2967 3260 -12 218 222 0 0 chr9 95675090 95675135 -22187492 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 23 54 0 0 chr9 95675414 95675451 -22187176 + AT_rich Low_complexity Low_complexity 1 37 0 324 208 0 0 chr9 95675636 95675737 -22186890 + (CTATT)n Simple_repeat Simple_repeat 2 102 0 185 307 27 27 chr9 95675992 95676067 -22186560 - L2 LINE L2 -264 3008 2934 367 312 35 17 chr9 95676767 95676940 -22185687 + L1MEc LINE L1 82 257 -6139 1540 269 81 72 chr9 95677308 95678565 -22184062 + L1MEc LINE L1 659 1927 -4469 1200 268 57 28 chr9 95678600 95679093 -22183534 + L1MEc LINE L1 2323 2829 -3386 219 288 81 45 chr9 95679197 95679308 -22183319 + MIR3 SINE MIR 53 167 -41 193 243 0 100 chr9 95679342 95679412 -22183215 + L2 LINE L2 3251 3313 0 2025 117 34 0 chr9 95679841 95680132 -22182495 + AluSq SINE Alu 1 301 -12 303 140 0 0 chr9 95680132 95680182 -22182445 + (GA)n Simple_repeat Simple_repeat 1 50 0 21 36 0 0 chr9 95680460 95680488 -22182139 + AT_rich Low_complexity Low_complexity 1 28 0 472 275 0 8 chr9 95680545 95680665 -22181962 - MLT1C LTR MaLR 0 467 349 183 431 28 9 chr9 95680855 95680964 -22181663 - L2 LINE L2 -64 3208 3098 497 309 51 48 chr9 95681213 95681566 -22181061 + L1MCa LINE L1 1367 1720 -4820 610 312 90 37 chr9 95682060 95682680 -22179947 + L1MCa LINE L1 2441 3097 -3443 395 282 37 65 chr9 95682681 95682926 -22179701 - L2 LINE L2 -129 3184 2947 1954 159 30 21 chr9 95682989 95683361 -22179266 + THE1C LTR MaLR 1 375 0 297 290 80 81 chr9 95683366 95683627 -22179000 + L1ME LINE L1 5512 5771 -391 31 88 0 0 chr9 95683723 95683803 -22178824 + AT_rich Low_complexity Low_complexity 1 80 0 282 73 0 0 chr9 95684134 95684175 -22178452 + (TG)n Simple_repeat Simple_repeat 2 42 0 314 240 0 10 chr9 95685159 95685263 -22177364 + CT-rich Low_complexity Low_complexity 1 103 0 23 54 0 0 chr9 95685573 95685610 -22177017 + AT_rich Low_complexity Low_complexity 1 37 0 634 202 0 124 chr9 95686138 95686316 -22176311 + FRAM SINE Alu 1 152 -24 226 318 35 35 chr9 95686318 95686403 -22176224 - L2 LINE L2 -21 3292 3208 311 253 0 13 chr9 95686872 95686951 -22175676 - MIR SINE MIR -66 142 65 229 268 0 24 chr9 95687062 95687144 -22175483 - MIR SINE MIR 0 262 183 439 268 9 18 chr9 95687226 95687338 -22175289 + L2 LINE L2 3188 3298 -15 292 314 0 0 chr9 95688095 95688165 -22174462 - L3 LINE CR1 -5 1572 1503 355 240 80 91 chr9 95688565 95688806 -22173821 - L1ME LINE L1 -691 5475 5255 24 0 0 0 chr9 95689203 95689227 -22173400 + AT_rich Low_complexity Low_complexity 1 24 0 4711 189 24 46 chr9 95689236 95691251 -22171376 - L1MA9 LINE L1 -10 6302 4314 285 337 108 41 chr9 95691360 95691545 -22171082 - MIR SINE MIR -34 174 16 222 37 0 0 chr9 95691845 95691872 -22170755 + (TAA)n Simple_repeat Simple_repeat 1 27 0 1376 302 137 37 chr9 95692720 95692914 -22169713 - L2 LINE L2 -2 3311 3138 834 189 44 5 chr9 95692914 95693120 -22169507 + L1MA4 LINE L1 6085 6298 -2 1376 302 137 37 chr9 95693120 95694124 -22168503 - L2 LINE L2 -175 3138 1987 189 0 0 0 chr9 95695017 95695038 -22167589 + (CAT)n Simple_repeat Simple_repeat 1 21 0 294 346 81 38 chr9 95695935 95696120 -22166507 + MIR3 SINE MIR 6 198 -10 272 308 29 71 chr9 95696187 95696369 -22166258 + MIR SINE MIR 20 194 -14 327 245 53 33 chr9 95697053 95697188 -22165439 - MIR SINE MIR -31 177 40 538 311 116 0 chr9 95697809 95698034 -22164593 - MIR SINE MIR 0 262 12 957 308 111 13 chr9 95699566 95699953 -22162674 + L2 LINE L2 2886 3310 -3 1919 155 3 7 chr9 95700063 95700359 -22162268 + AluSx SINE Alu 2 296 -16 240 377 25 16 chr9 95700591 95700713 -22161914 - MIR SINE MIR -69 139 21 1045 276 66 11 chr9 95700785 95701204 -22161423 + LTR16A LTR ERVL 8 443 -7 893 117 52 7 chr9 95701454 95701608 -22161019 - MSTA LTR MaLR -2 426 266 7624 28 4 0 chr9 95701784 95703029 -22159598 - L1PA3 LINE L1 0 6155 4910 13486 34 0 1 chr9 95703029 95704725 -22157902 + L1PA3 LINE L1 3229 4923 -1223 299 259 82 19 chr9 95705586 95705744 -22156883 - MER117 DNA MER1_type -28 169 2 2316 110 3 0 chr9 95705778 95706087 -22156540 + AluSq SINE Alu 1 310 -3 202 336 131 8 chr9 95706818 95706940 -22155687 - L2 LINE L2 0 3272 3136 1670 179 39 41 chr9 95707014 95707377 -22155250 - MLT1A1 LTR MaLR -3 362 1 296 222 86 12 chr9 95707378 95707459 -22155168 - L2 LINE L2 -32 3281 3195 190 237 0 0 chr9 95707759 95707797 -22154830 - L2 LINE L2 -93 3179 3142 462 88 0 0 chr9 95708587 95708655 -22153972 + (GGGAA)n Simple_repeat Simple_repeat 2 69 0 337 200 0 0 chr9 95708657 95708717 -22153910 + GA-rich Low_complexity Low_complexity 3 62 0 2871 285 94 32 chr9 95708763 95710107 -22152520 + L2 LINE L2 1815 3246 -67 22 35 0 0 chr9 95710119 95710148 -22152479 + AT_rich Low_complexity Low_complexity 1 29 0 582 305 8 23 chr9 95710316 95710554 -22152073 - MIR SINE MIR -3 259 27 231 371 85 52 chr9 95710671 95711059 -22151568 - L2 LINE L2 -1 3271 2871 2068 115 40 43 chr9 95711231 95711605 -22151022 + THE1C LTR MaLR 1 373 -2 406 273 45 34 chr9 95711666 95711842 -22150785 - MER5B DNA MER1_type 0 178 1 364 290 40 0 chr9 95712027 95712127 -22150500 + MIR SINE MIR 141 244 -18 197 300 142 47 chr9 95712143 95712396 -22150231 - L2 LINE L2 -900 2414 2138 247 333 17 25 chr9 95712404 95712524 -22150103 + MIR SINE MIR 98 216 -46 554 323 48 32 chr9 95713050 95713301 -22149326 - MIR SINE MIR -3 259 5 270 56 0 0 chr9 95713329 95713365 -22149262 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2025 98 3 24 chr9 95713367 95713654 -22148973 - AluSg SINE Alu -29 281 1 188 216 0 39 chr9 95713692 95713743 -22148884 - MIR SINE MIR -57 151 103 2289 111 3 0 chr9 95714018 95714325 -22148302 - AluSc SINE Alu -1 308 1 314 307 7 73 chr9 95714737 95714887 -22147740 + MIR SINE MIR 42 181 -81 26 0 0 0 chr9 95715505 95715531 -22147096 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr9 95715708 95715729 -22146898 + AT_rich Low_complexity Low_complexity 1 21 0 196 294 11 54 chr9 95715758 95715850 -22146777 + MIR3 SINE MIR 109 196 -12 692 250 34 0 chr9 95716485 95716661 -22145966 - MIR SINE MIR -4 258 77 196 270 16 0 chr9 95716855 95716918 -22145709 + L2 LINE L2 2550 2613 -701 256 287 49 57 chr9 95718164 95718286 -22144341 + MIR SINE MIR 68 188 -74 375 119 0 0 chr9 95718433 95718500 -22144127 + (TC)n Simple_repeat Simple_repeat 1 67 0 261 323 40 48 chr9 95718553 95718677 -22143950 + MIR3 SINE MIR 3 125 -83 1008 154 35 75 chr9 95718758 95718985 -22143642 + MER20 DNA MER1_type 1 218 -1 1970 128 29 31 chr9 95719115 95719222 -22143405 - L1MA9 LINE L1 -1 6311 6205 2273 103 12 100 chr9 95719222 95719631 -22142996 + THE1C LTR MaLR 3 375 0 1970 128 29 31 chr9 95719631 95719905 -22142722 - L1MA9 LINE L1 -107 6205 5931 2904 178 35 6 chr9 95719906 95720866 -22141761 + L1MA8 LINE L1 4873 5860 -431 289 319 17 50 chr9 95721014 95721133 -22141494 - MIR SINE MIR -83 179 65 21 0 0 0 chr9 95721714 95721735 -22140892 + AT_rich Low_complexity Low_complexity 1 21 0 344 288 75 87 chr9 95722781 95723170 -22139457 + L2 LINE L2 1487 1870 -1444 277 238 98 63 chr9 95723232 95723375 -22139252 + L2 LINE L2 1846 1993 -1321 4182 204 14 33 chr9 95723396 95725175 -22137452 - L1MB7 LINE L1 -8 6674 4936 25 0 0 0 chr9 95725196 95725221 -22137406 + AT_rich Low_complexity Low_complexity 1 25 0 3883 228 22 37 chr9 95725368 95726471 -22136156 - L1MB7 LINE L1 -5435 1107 22 452 358 28 46 chr9 95726491 95726882 -22135745 + L2 LINE L2 2035 2418 -896 252 200 33 0 chr9 95727225 95727285 -22135342 + MLT1K LTR MaLR 523 584 -4 23 33 0 0 chr9 95727952 95727982 -22134645 + AT_rich Low_complexity Low_complexity 1 30 0 529 257 131 14 chr9 95728994 95729216 -22133411 + MIR SINE MIR 3 250 -12 225 222 56 0 chr9 95729224 95729278 -22133349 - L2 LINE L2 -6 3307 3251 230 295 74 42 chr9 95729360 95729455 -22133172 + MIR SINE MIR 43 140 -68 520 315 149 5 chr9 95729517 95729739 -22132888 - MIR SINE MIR -1 261 8 41 36 0 0 chr9 95731045 95731100 -22131527 + AT_rich Low_complexity Low_complexity 1 55 0 2122 123 0 10 chr9 95731138 95731440 -22131187 + AluSx SINE Alu 1 299 -13 195 69 0 0 chr9 95732176 95732205 -22130422 + (TAAAAA)n Simple_repeat Simple_repeat 6 34 0 315 273 0 26 chr9 95732222 95732299 -22130328 - MER91 DNA MER1_type -81 115 41 218 195 0 0 chr9 95733416 95733457 -22129170 + GA-rich Low_complexity Low_complexity 3 43 0 405 39 0 0 chr9 95733457 95733508 -22129119 + (GGAA)n Simple_repeat Simple_repeat 3 53 0 2345 96 0 0 chr9 95733784 95734085 -22128542 + AluY SINE Alu 1 301 -10 30 0 0 0 chr9 95734085 95734115 -22128512 + AT_rich Low_complexity Low_complexity 1 30 0 222 346 74 0 chr9 95734521 95734683 -22127944 + L2 LINE L2 2558 2731 -583 302 369 63 22 chr9 95735063 95735285 -22127342 + MIR SINE MIR 20 250 -12 1127 69 0 0 chr9 95736283 95736427 -22126200 + L1PA8 LINE L1 6020 6163 -9 496 297 7 26 chr9 95736437 95736592 -22126035 + MIR SINE MIR 20 171 -91 344 343 112 35 chr9 95736959 95737449 -22125178 + L2 LINE L2 2503 3032 -240 22 0 0 0 chr9 95737540 95737562 -22125065 + AT_rich Low_complexity Low_complexity 1 22 0 232 128 26 0 chr9 95737566 95737605 -22125022 + L2 LINE L2 3015 3054 -218 451 271 124 7 chr9 95738449 95738755 -22123872 - L1MC4 LINE L1 -1 8041 7700 1625 160 14 7 chr9 95738763 95739070 -22123557 - AluSx SINE Alu 0 309 1 190 338 62 25 chr9 95739073 95739153 -22123474 + MIR SINE MIR 25 107 -101 23 54 0 0 chr9 95739259 95739296 -22123331 + AT_rich Low_complexity Low_complexity 1 37 0 2144 126 7 3 chr9 95739517 95739818 -22122809 + AluSx SINE Alu 1 302 -10 218 255 0 0 chr9 95741799 95741850 -22120777 + CT-rich Low_complexity Low_complexity 2 52 0 820 120 16 0 chr9 95742103 95742228 -22120399 + AluJb SINE Alu 1 127 -185 24 32 0 0 chr9 95742228 95742259 -22120368 + AT_rich Low_complexity Low_complexity 1 31 0 229 271 24 47 chr9 95742326 95742411 -22120216 + MIR SINE MIR 57 139 -123 221 304 29 0 chr9 95742822 95742891 -22119736 + GA-rich Low_complexity Low_complexity 5 75 0 31475 46 2 0 chr9 95742893 95746948 -22115679 - L1P LINE L1 -2068 4078 15 239 104 21 0 chr9 95747003 95747051 -22115576 + (TA)n Simple_repeat Simple_repeat 2 50 0 357 288 106 49 chr9 95747340 95747445 -22115182 + MIR SINE MIR 12 110 -152 2220 107 3 19 chr9 95747445 95747762 -22114865 - AluSq SINE Alu -1 312 1 357 288 106 49 chr9 95747762 95747882 -22114745 + MIR SINE MIR 110 250 -12 197 211 18 0 chr9 95748591 95748648 -22113979 + (TGGA)n Simple_repeat Simple_repeat 1 58 0 21 0 0 0 chr9 95748722 95748743 -22113884 + AT_rich Low_complexity Low_complexity 1 21 0 276 368 6 39 chr9 95749377 95749559 -22113068 - MER5A DNA MER1_type 0 189 14 183 343 101 41 chr9 95749873 95750042 -22112585 + MIR SINE MIR 69 247 -15 339 349 67 14 chr9 95750171 95750321 -22112306 + MIR SINE MIR 32 187 -63 2107 184 49 0 chr9 95750348 95750756 -22111871 - MSTA LTR MaLR 0 428 1 9168 172 16 1 chr9 95750756 95752368 -22110259 - MSTA-int LTR MaLR 0 1651 17 2330 145 48 12 chr9 95752368 95752781 -22109846 - MSTA LTR MaLR 0 428 1 2324 151 46 12 chr9 95753066 95753478 -22109149 - MSTB LTR MaLR 0 426 1 318 241 13 0 chr9 95753478 95753557 -22109070 + MIR SINE MIR 81 160 -102 214 222 0 0 chr9 95753690 95753735 -22108892 + MIR SINE MIR 97 141 -121 310 240 51 28 chr9 95753836 95753986 -22108641 - MLT1J2 LTR MaLR -191 218 69 402 278 0 0 chr9 95754065 95754162 -22108465 + MIR SINE MIR 159 255 -7 2175 123 3 0 chr9 95754239 95754556 -22108071 - AluSx SINE Alu 0 312 1 215 324 81 0 chr9 95754841 95754915 -22107712 - L2 LINE L2 -254 3018 2939 1744 148 71 46 chr9 95755346 95755712 -22106915 - THE1C LTR MaLR 0 375 1 193 296 93 0 chr9 95755776 95755830 -22106797 + MIR SINE MIR 50 108 -154 187 263 44 70 chr9 95755789 95755903 -22106724 + L2 LINE L2 2749 2859 -455 * 243 88 0 0 chr9 95756266 95756300 -22106327 + (TG)n Simple_repeat Simple_repeat 1 34 0 281 312 35 43 chr9 95756399 95756540 -22106087 + MIR SINE MIR 98 237 -25 190 143 86 0 chr9 95756550 95756585 -22106042 - L2 LINE L2 -2 3270 3233 188 111 28 0 chr9 95757316 95757352 -22105275 + (TA)n Simple_repeat Simple_repeat 1 37 0 396 0 0 0 chr9 95757594 95757638 -22104989 + (TG)n Simple_repeat Simple_repeat 2 45 0 893 185 9 24 chr9 95758156 95758367 -22104260 + L1MC2 LINE L1 6115 6322 -22 1164 171 45 31 chr9 95758415 95758637 -22103990 + AluJb SINE Alu 62 286 -26 233 149 21 21 chr9 95758687 95758734 -22103893 + L2 LINE L2 2979 3025 -247 295 217 57 57 chr9 95758842 95758948 -22103679 + MLT1J2 LTR MaLR 344 449 -1 197 324 29 29 chr9 95758957 95759062 -22103565 + L2 LINE L2 3193 3297 -16 380 345 48 19 chr9 95759103 95759312 -22103315 + MIR SINE MIR 5 219 -43 1910 221 42 50 chr9 95760008 95760511 -22102116 - MLT2B3 LTR ERVL -53 501 3 1488 203 19 39 chr9 95761485 95761867 -22100760 + MLT1A2 LTR MaLR 1 466 -1 1089 219 19 38 chr9 95762920 95763185 -22099442 + MIR SINE MIR 3 262 0 453 340 103 0 chr9 95763346 95763531 -22099096 - MIR SINE MIR -39 223 20 1764 164 3 32 chr9 95763547 95763859 -22098768 + AluJb SINE Alu 1 303 -9 217 335 162 31 chr9 95764302 95764493 -22098134 + MIR SINE MIR 46 261 -1 847 245 52 0 chr9 95764509 95764701 -22097926 + MIR SINE MIR 44 245 -17 333 148 11 45 chr9 95765465 95765553 -22097074 + T-rich Low_complexity Low_complexity 3 87 0 24 32 0 0 chr9 95766106 95766137 -22096490 + AT_rich Low_complexity Low_complexity 1 31 0 368 236 0 47 chr9 95766625 95766731 -22095896 + MIR SINE MIR 92 192 -70 1843 297 67 66 chr9 95767821 95768081 -22094546 + L2 LINE L2 1931 2189 -1124 1705 107 58 84 chr9 95768081 95768390 -22094237 - AluSx SINE Alu -11 301 1 1843 297 67 66 chr9 95768390 95769195 -22093432 + L2 LINE L2 2189 3000 -313 460 262 40 0 chr9 95769655 95769781 -22092846 - MIR SINE MIR -79 183 53 311 246 52 137 chr9 95770076 95770287 -22092340 + L3 LINE CR1 1370 1562 -15 261 311 75 31 chr9 95770327 95770488 -22092139 - LTR16C LTR ERVL 0 491 324 1493 176 58 112 chr9 95770916 95771244 -22091383 + MLT1D LTR MaLR 1 290 -215 2224 119 0 10 chr9 95771244 95771556 -22091071 - AluSg1 SINE Alu 0 309 1 1493 176 58 112 chr9 95771556 95771761 -22090866 + MLT1D LTR MaLR 290 505 0 267 200 49 0 chr9 95771834 95771913 -22090714 - MLT1I LTR MaLR -4 446 318 349 271 15 59 chr9 95772028 95772231 -22090396 - MLT1I LTR MaLR -123 286 108 183 80 0 0 chr9 95772925 95772950 -22089677 + (TTC)n Simple_repeat Simple_repeat 1 25 0 443 326 43 101 chr9 95773113 95773460 -22089167 + L2 LINE L2 2944 3270 -2 1547 186 32 46 chr9 95773731 95774101 -22088526 + MLT1A1 LTR MaLR 1 365 0 206 315 14 0 chr9 95774450 95774523 -22088104 + CT-rich Low_complexity Low_complexity 3 76 0 336 48 0 0 chr9 95775180 95775222 -22087405 + (CA)n Simple_repeat Simple_repeat 2 43 0 2129 99 14 24 chr9 95775297 95775591 -22087036 - AluSc SINE Alu -18 291 1 340 352 121 19 chr9 95775869 95776366 -22086261 + L2 LINE L2 2550 3099 -173 194 354 0 12 chr9 95776458 95776540 -22086087 + L2 LINE L2 3228 3308 -5 365 295 26 64 chr9 95777196 95777349 -22085278 + MIR3 SINE MIR 33 182 -26 220 252 93 75 chr9 95778046 95778153 -22084474 - MIR SINE MIR -6 256 148 191 189 151 0 chr9 95778509 95778562 -22084065 + L2 LINE L2 1022 1082 -2232 704 144 28 28 chr9 95779013 95779193 -22083434 + GA-rich Low_complexity Low_complexity 1 180 0 418 287 16 25 chr9 95780227 95780349 -22082278 + MIR SINE MIR 9 129 -79 181 213 160 43 chr9 95780570 95780664 -22081963 - L2 LINE L2 -1 3312 3208 333 0 0 0 chr9 95780768 95780805 -22081822 + (TG)n Simple_repeat Simple_repeat 2 38 0 230 381 31 21 chr9 95780810 95780907 -22081720 - L2 LINE L2 -262 3010 2913 226 333 38 103 chr9 95780991 95781134 -22081493 - L2 LINE L2 -474 2840 2724 686 156 0 55 chr9 95781134 95781262 -22081365 - FLAM_A SINE Alu -9 124 4 226 333 38 103 chr9 95781262 95781409 -22081218 - L2 LINE L2 -590 2724 2569 663 272 108 39 chr9 95782565 95782870 -22079757 - L2 LINE L2 -2 3311 2986 214 269 19 0 chr9 95783371 95783423 -22079204 - L2 LINE L2 -221 3051 2999 242 239 0 0 chr9 95783790 95783836 -22078791 - L2 LINE L2 -34 3279 3234 184 311 0 33 chr9 95783843 95783904 -22078723 + L2 LINE L2 3254 3312 -1 247 375 69 26 chr9 95783916 95784148 -22078479 - L2 LINE L2 -342 2972 2731 208 148 33 49 chr9 95784152 95784213 -22078414 + A-rich Low_complexity Low_complexity 3 62 0 1067 197 98 20 chr9 95785381 95785737 -22076890 - MER114 LTR ERV -246 402 19 25 0 0 0 chr9 95786006 95786031 -22076596 + AT_rich Low_complexity Low_complexity 1 25 0 30 27 0 0 chr9 95786099 95786136 -22076491 + AT_rich Low_complexity Low_complexity 1 37 0 578 277 100 73 chr9 95786705 95787176 -22075451 - MLT1H LTR MaLR -4 545 57 2441 62 13 0 chr9 95787176 95787480 -22075147 + AluY SINE Alu 1 308 -3 578 277 100 73 chr9 95787480 95787539 -22075088 - MLT1H LTR MaLR -492 57 1 221 388 52 0 chr9 95787948 95788064 -22074563 - L2 LINE L2 -1 3271 3150 230 56 28 0 chr9 95788742 95788778 -22073849 + (TG)n Simple_repeat Simple_repeat 2 38 0 354 256 38 68 chr9 95788991 95789124 -22073503 + MIR SINE MIR 8 136 -126 204 172 52 86 chr9 95789226 95789284 -22073343 - L3 LINE CR1 -894 683 628 198 316 44 108 chr9 95789587 95789745 -22072882 - L2 LINE L2 0 3272 3125 705 307 175 15 chr9 95790013 95790478 -22072149 - L2 LINE L2 -4 3309 2759 195 182 0 23 chr9 95790488 95790532 -22072095 + L2 LINE L2 3268 3310 -3 212 337 73 39 chr9 95790804 95790982 -22071645 - L2 LINE L2 -237 3035 2852 607 258 0 0 chr9 95791662 95791786 -22070841 + MIR SINE MIR 2 125 -137 197 231 19 19 chr9 95792034 95792086 -22070541 - MIR SINE MIR -171 91 40 350 351 38 8 chr9 95792106 95792237 -22070390 - MIR3 SINE MIR -36 172 38 218 346 20 10 chr9 95792857 95792958 -22069669 + L3 LINE CR1 998 1099 -478 4180 179 18 53 chr9 95793259 95794123 -22068504 - L1MB3 LINE L1 -2 6181 5344 2655 114 12 19 chr9 95794123 95794545 -22068082 - L1PA10 LINE L1 0 6168 5750 4180 179 18 53 chr9 95794545 95794756 -22067871 - L1MB3 LINE L1 -839 5344 5127 434 338 169 14 chr9 95795817 95796101 -22066526 - L2 LINE L2 -534 2780 2453 362 313 31 31 chr9 95796096 95796259 -22066368 + L2 LINE L2 2920 3082 -190 * 886 295 9 0 chr9 95796389 95796616 -22066011 + MIR SINE MIR 13 241 -21 294 337 19 53 chr9 95796728 95796928 -22065699 - L2 LINE L2 -874 2440 2250 1741 218 66 14 chr9 95796928 95797369 -22065258 - MLT1C LTR MaLR -3 464 1 294 337 19 53 chr9 95797369 95797432 -22065195 - L2 LINE L2 -1064 2250 2186 513 336 40 16 chr9 95797437 95797684 -22064943 + MIR SINE MIR 8 260 -2 317 315 40 70 chr9 95797912 95798245 -22064382 + L3 LINE CR1 1186 1560 -17 891 305 27 14 chr9 95798782 95799077 -22063550 + LTR16A LTR ERVL 25 323 -127 857 128 13 0 chr9 95799160 95799309 -22063318 - L1MA10 LINE L1 -5 6329 6179 9112 211 35 37 chr9 95799570 95802648 -22059979 - L1MA9 LINE L1 -202 6110 3042 1786 172 0 7 chr9 95802648 95802950 -22059677 - AluJb SINE Alu -12 300 1 9112 211 35 37 chr9 95802950 95803107 -22059520 - L1MA9 LINE L1 -3270 3042 2886 335 304 113 0 chr9 95803107 95803222 -22059405 + LTR16A LTR ERVL 318 445 -5 1270 296 80 0 chr9 95803226 95803665 -22058962 + L2 LINE L2 1710 2183 -1131 694 267 33 8 chr9 95803665 95803871 -22058756 - MER58B DNA MER1_type 0 341 1 207 233 186 78 chr9 95803918 95804047 -22058580 + L2 LINE L2 2261 2403 -911 934 340 99 39 chr9 95804087 95804807 -22057820 + L2 LINE L2 2549 3301 -12 1848 297 31 71 chr9 95804813 95805976 -22056651 + HAL1 LINE L1 4 1119 -1388 823 251 105 56 chr9 95805980 95806325 -22056302 + MLT2D LTR ERVL 1 369 -45 486 75 0 0 chr9 95806325 95806392 -22056235 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 823 251 105 56 chr9 95806392 95806437 -22056190 + MLT2D LTR ERVL 369 410 -4 1028 293 76 48 chr9 95806437 95806655 -22055972 + HAL1 LINE L1 1119 1329 -1178 947 275 9 0 chr9 95806655 95806877 -22055750 + MER58A DNA MER1_type 1 224 0 1028 293 76 48 chr9 95806877 95807471 -22055156 + HAL1 LINE L1 1329 1954 -553 478 139 35 0 chr9 95807519 95807605 -22055022 + MLT2B1 LTR ERVL 1 89 -431 645 152 16 5 chr9 95807608 95807732 -22054895 + MSTA LTR MaLR 1 131 -244 983 214 63 100 chr9 95807820 95807905 -22054722 - MLT1A1 LTR MaLR 0 365 278 7167 190 4 21 chr9 95807905 95810193 -22052434 - L1PA15 LINE L1 -3 6162 3877 983 214 63 100 chr9 95810193 95810486 -22052141 - MLT1A1 LTR MaLR -87 278 1 225 256 37 37 chr9 95812276 95812358 -22050269 - MIR SINE MIR -89 173 92 364 276 68 68 chr9 95813475 95813638 -22048989 + HAL1b LINE L1 39 201 -1147 2070 128 0 3 chr9 95813718 95814008 -22048619 + AluSx SINE Alu 11 299 -13 21 36 0 0 chr9 95814293 95814321 -22048306 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr9 95814449 95814475 -22048152 + AT_rich Low_complexity Low_complexity 1 26 0 385 289 122 37 chr9 95814718 95814988 -22047639 - L2 LINE L2 -338 2976 2684 781 223 37 28 chr9 95815573 95815803 -22046824 + MIR SINE MIR 33 260 -2 963 215 5 0 chr9 95816017 95816222 -22046405 - L1PB4 LINE L1 0 6156 5951 22 56 0 0 chr9 95816249 95816285 -22046342 + AT_rich Low_complexity Low_complexity 1 36 0 280 262 68 0 chr9 95816429 95816532 -22046095 + MER103 DNA DNA 55 164 -2 298 235 0 0 chr9 95816808 95816876 -22045751 + MLT2B3 LTR ERVL 1 68 -486 1452 231 59 109 chr9 95816975 95817434 -22045193 + MLT2B3 LTR ERVL 73 508 -46 422 35 0 18 chr9 95817466 95817523 -22045104 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 2581 127 29 5 chr9 95818273 95818689 -22043938 + L1PA13 LINE L1 5735 6160 -3 1882 131 0 60 chr9 95818715 95819029 -22043598 - AluSx SINE Alu -17 295 1 532 299 62 50 chr9 95819116 95819437 -22043190 - L2 LINE L2 0 3313 2989 763 134 121 0 chr9 95819674 95819823 -22042804 + L1MA4A LINE L1 6137 6303 0 212 348 87 7 chr9 95821008 95821146 -22041481 + MIR SINE MIR 4 152 -110 458 360 0 0 chr9 95821300 95821436 -22041191 + MIR3 SINE MIR 65 200 -8 299 291 0 39 chr9 95821490 95821593 -22041034 - MIR SINE MIR 0 262 164 267 146 0 91 chr9 95821715 95821770 -22040857 - MIR SINE MIR 0 262 213 453 294 145 23 chr9 95821913 95822127 -22040500 - MIR SINE MIR 0 262 23 237 272 123 0 chr9 95822383 95822497 -22040130 - L1ME4a LINE L1 -2 6119 5992 689 298 35 8 chr9 95822651 95822906 -22039721 - MIR SINE MIR 0 262 1 967 278 41 9 chr9 95822949 95823266 -22039361 - L1ME4a LINE L1 -195 5926 5600 195 111 0 0 chr9 95823605 95823632 -22038995 - MIR SINE MIR -18 244 218 186 265 82 0 chr9 95823606 95823655 -22038972 - L2 LINE L2 -25 3247 3195 * 391 342 18 0 chr9 95823987 95824098 -22038529 - MER81 DNA DNA 0 114 2 256 321 49 69 chr9 95824364 95824610 -22038017 - L2 LINE L2 -169 3103 2863 677 345 87 26 chr9 95824827 95825375 -22037252 - L2 LINE L2 0 3313 2712 296 256 39 13 chr9 95825488 95825566 -22037061 - L2 LINE L2 -31 3241 3162 298 329 20 47 chr9 95825572 95825721 -22036906 + MIR SINE MIR 109 253 -9 27 92 0 0 chr9 95826134 95826210 -22036417 + AT_rich Low_complexity Low_complexity 1 76 0 22 35 0 0 chr9 95826772 95826801 -22035826 + AT_rich Low_complexity Low_complexity 1 29 0 1594 117 0 0 chr9 95826801 95827032 -22035595 - L1MA1 LINE L1 -4 6298 6068 283 343 23 0 chr9 95827117 95827254 -22035373 + MIR3 SINE MIR 54 194 -14 181 295 62 84 chr9 95827443 95827670 -22034957 - MIR SINE MIR -10 252 31 520 297 22 22 chr9 95828240 95828422 -22034205 - MIR SINE MIR -75 187 6 529 316 111 8 chr9 95828722 95828956 -22033671 + MIR SINE MIR 5 262 0 3668 217 57 26 chr9 95828957 95830459 -22032168 - L1MB8 LINE L1 -1 6177 4608 272 33 33 50 chr9 95830459 95830519 -22032108 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 3668 217 57 26 chr9 95830519 95830810 -22031817 - L1MB8 LINE L1 -1570 4608 4328 21 36 0 0 chr9 95830845 95830873 -22031754 + AT_rich Low_complexity Low_complexity 1 28 0 329 338 34 20 chr9 95831012 95831216 -22031411 - MIR SINE MIR -32 230 24 314 302 180 32 chr9 95831303 95831492 -22031135 + MIR SINE MIR 22 238 -24 1071 322 107 14 chr9 95831877 95832389 -22030238 + MLT1G1 LTR MaLR 26 585 -10 322 317 20 10 chr9 95832526 95832627 -22030000 - L2 LINE L2 -4 3268 3167 1256 304 72 45 chr9 95832846 95833385 -22029242 - MLT1G1 LTR MaLR -36 559 6 255 314 71 62 chr9 95833827 95834037 -22028590 + L2 LINE L2 3090 3301 -12 4737 177 20 48 chr9 95834213 95834769 -22027858 + L1MC2 LINE L1 6137 6707 -1043 1248 211 57 72 chr9 95834769 95835171 -22027456 + MSTD LTR MaLR 1 396 0 4737 177 20 48 chr9 95835171 95835666 -22026961 + L1MC2 LINE L1 6707 7750 0 544 297 99 9 chr9 95836738 95836960 -22025667 + MIR SINE MIR 21 262 0 660 290 205 25 chr9 95836972 95837420 -22025207 + L3 LINE CR1 739 1267 -310 3423 270 91 49 chr9 95837510 95838316 -22024311 + L2 LINE L2 1330 2101 -1213 2092 109 0 0 chr9 95838316 95838629 -22023998 + AluSx SINE Alu 1 313 0 3423 270 91 49 chr9 95838629 95839116 -22023511 + L2 LINE L2 2101 2702 -612 2888 151 57 0 chr9 95839116 95839680 -22022947 - L1MA8 LINE L1 -5 6286 5691 3423 270 91 49 chr9 95839680 95839941 -22022686 + L2 LINE L2 2702 2951 -363 1121 196 16 8 chr9 95840025 95840280 -22022347 + L1MA10 LINE L1 4203 4459 -1687 4757 208 9 34 chr9 95840282 95841806 -22020821 + L1MA10 LINE L1 4848 6334 0 213 229 0 42 chr9 95841878 95841926 -22020701 - MIR SINE MIR -150 112 67 387 119 0 0 chr9 95842211 95842278 -22020349 + (TA)n Simple_repeat Simple_repeat 2 68 0 264 149 0 0 chr9 95843331 95843378 -22019249 + (TG)n Simple_repeat Simple_repeat 1 47 0 258 355 140 46 chr9 95844654 95845333 -22017294 + L2 LINE L2 2230 2972 -342 188 362 0 0 chr9 95845374 95845443 -22017184 - L2 LINE L2 -4 3309 3241 2099 140 19 32 chr9 95845457 95845835 -22016792 - THE1C LTR MaLR 0 375 3 249 77 0 77 chr9 95846146 95846211 -22016416 + (TTTC)n Simple_repeat Simple_repeat 1 60 0 657 69 0 0 chr9 95846211 95846298 -22016329 + (TTCC)n Simple_repeat Simple_repeat 1 87 0 303 316 45 39 chr9 95846303 95846458 -22016169 - L3 LINE CR1 -2 1575 1420 221 345 91 38 chr9 95846472 95846681 -22015946 + MIR SINE MIR 29 248 -14 213 39 0 0 chr9 95846815 95846841 -22015786 + (CA)n Simple_repeat Simple_repeat 2 27 0 402 21 0 0 chr9 95847132 95847179 -22015448 + (TA)n Simple_repeat Simple_repeat 2 48 0 297 371 35 0 chr9 95847264 95847380 -22015247 + L2 LINE L2 3185 3304 -9 1519 163 6 55 chr9 95848679 95849022 -22013605 + L1MA10 LINE L1 6006 6331 -3 1521 222 84 27 chr9 95849378 95849820 -22012807 + MLT1C LTR MaLR 1 467 0 1039 242 53 4 chr9 95850193 95850474 -22012153 + LTR16A LTR ERVL 156 450 0 188 111 28 0 chr9 95851226 95851262 -22011365 + (CA)n Simple_repeat Simple_repeat 2 38 0 23 0 0 0 chr9 95852029 95852052 -22010575 + AT_rich Low_complexity Low_complexity 1 23 0 418 297 38 83 chr9 95853443 95853709 -22008918 - MIR SINE MIR -6 256 3 313 306 194 11 chr9 95853731 95853917 -22008710 + L3 LINE CR1 1180 1399 -178 199 368 0 0 chr9 95854507 95854564 -22008063 - L2 LINE L2 -92 3180 3124 272 296 40 33 chr9 95855030 95855182 -22007445 + MIR SINE MIR 40 192 -70 233 290 135 48 chr9 95855362 95855569 -22007058 + L2 LINE L2 3059 3283 -30 183 371 9 19 chr9 95855630 95855735 -22006892 + MIR3 SINE MIR 86 189 -19 706 311 0 0 chr9 95858268 95858461 -22004166 - MIR SINE MIR -21 241 49 201 176 0 0 chr9 95858497 95858531 -22004096 + A-rich Low_complexity Low_complexity 1 34 0 224 351 126 26 chr9 95858590 95858861 -22003766 - L2 LINE L2 -36 3277 2980 194 365 28 28 chr9 95859942 95860049 -22002578 - MIR3 SINE MIR -93 115 9 408 308 42 51 chr9 95860304 95860518 -22002109 + MIR SINE MIR 38 249 -13 351 0 0 0 chr9 95860756 95860795 -22001832 + (CA)n Simple_repeat Simple_repeat 2 40 0 359 356 0 9 chr9 95861029 95861144 -22001483 - L2 LINE L2 0 3313 3200 192 262 0 0 chr9 95861437 95861479 -22001148 + MIR SINE MIR 102 143 -119 400 295 76 129 chr9 95861524 95861866 -22000761 + L2 LINE L2 2949 3272 0 534 257 63 0 chr9 95862564 95862739 -21999888 - Charlie8 DNA MER1_type -2231 186 1 1865 171 3 0 chr9 95863134 95863433 -21999194 + AluJb SINE Alu 1 300 -12 352 240 91 78 chr9 95863867 95864021 -21998606 + MER57B LTR ERV1 106 261 -173 373 152 13 13 chr9 95864070 95864149 -21998478 + LTR54 LTR ERV1 432 510 0 221 241 37 0 chr9 95864400 95864454 -21998173 + L2 LINE L2 3210 3265 -7 297 0 0 0 chr9 95864515 95864548 -21998079 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 1077 185 129 59 chr9 95864852 95865209 -21997418 - MLT1B LTR MaLR -8 382 1 241 230 50 10 chr9 95866400 95866500 -21996127 + (TA)n Simple_repeat Simple_repeat 1 104 0 328 309 27 90 chr9 95867026 95867249 -21995378 + L2 LINE L2 2972 3180 -92 609 314 36 9 chr9 95867285 95867508 -21995119 - MIR SINE MIR -16 246 18 189 107 0 0 chr9 95867514 95867542 -21995085 + (TA)n Simple_repeat Simple_repeat 1 28 0 198 103 0 0 chr9 95867635 95867664 -21994963 + (A)n Simple_repeat Simple_repeat 1 29 0 740 246 173 0 chr9 95867700 95867920 -21994707 - MLT1H1 LTR MaLR 0 555 298 234 276 26 0 chr9 95868078 95868154 -21994473 - MLT1H1 LTR MaLR -476 79 2 467 350 0 0 chr9 95868337 95868474 -21994153 + L2 LINE L2 3136 3272 0 224 273 0 0 chr9 95868552 95868596 -21994031 + MIR3 SINE MIR 157 200 -8 836 323 92 22 chr9 95868632 95869124 -21993503 + L3 LINE CR1 939 1464 -113 2093 99 3 14 chr9 95869402 95869710 -21992917 - AluY SINE Alu 0 305 1 407 336 8 0 chr9 95869879 95870007 -21992620 - MIR SINE MIR -116 146 18 180 311 14 40 chr9 95870092 95870166 -21992461 + L2 LINE L2 3180 3251 -62 430 319 60 0 chr9 95870440 95870606 -21992021 + MIR SINE MIR 56 231 -31 388 332 71 25 chr9 95870608 95870846 -21991781 + MLT1J2 LTR MaLR 37 285 -165 252 372 0 13 chr9 95871373 95871451 -21991176 - MIR SINE MIR -166 96 20 24 0 0 0 chr9 95872382 95872406 -21990221 + AT_rich Low_complexity Low_complexity 1 24 0 279 0 0 0 chr9 95872539 95872570 -21990057 + (A)n Simple_repeat Simple_repeat 1 31 0 414 338 15 45 chr9 95872573 95872771 -21989856 - MIR SINE MIR -6 256 65 225 296 0 0 chr9 95873177 95873231 -21989396 + GA-rich Low_complexity Low_complexity 3 56 0 1552 184 0 55 chr9 95873519 95873828 -21988799 + AluJb SINE Alu 13 304 -8 1162 249 55 49 chr9 95873904 95874430 -21988197 + L1MC5 LINE L1 6999 7527 -434 2343 120 25 11 chr9 95874499 95874856 -21987771 + THE1B LTR MaLR 1 362 -2 9669 120 49 37 chr9 95874858 95876420 -21986207 + THE1B-int LTR MaLR 1 1580 0 2197 134 21 43 chr9 95876420 95876792 -21985835 + THE1B LTR MaLR 1 364 0 23 33 0 0 chr9 95876994 95877024 -21985603 + AT_rich Low_complexity Low_complexity 1 30 0 197 185 67 151 chr9 95877287 95877406 -21985221 + MIR SINE MIR 136 244 -18 256 359 42 21 chr9 95877739 95877881 -21984746 + L3 LINE CR1 1416 1560 -17 431 299 48 43 chr9 95877911 95878118 -21984509 - MIR SINE MIR -15 247 40 441 0 0 0 chr9 95878229 95878278 -21984349 + (TG)n Simple_repeat Simple_repeat 2 50 0 199 296 0 99 chr9 95878298 95878379 -21984248 - MIR SINE MIR -162 100 28 238 329 0 0 chr9 95878704 95878780 -21983847 + (CATA)n Simple_repeat Simple_repeat 4 79 0 302 336 22 22 chr9 95878941 95879078 -21983549 - MER5A DNA MER1_type -18 171 35 401 278 46 0 chr9 95879215 95879323 -21983304 + MIR SINE MIR 100 212 -50 747 307 13 4 chr9 95879767 95879995 -21982632 + MIR SINE MIR 13 242 -20 399 312 73 7 chr9 95880678 95881018 -21981609 - MLT1I LTR MaLR 0 409 5 382 348 79 50 chr9 95881083 95881677 -21980950 - L2 LINE L2 -85 3187 2578 228 353 78 7 chr9 95881950 95882103 -21980524 - MIR SINE MIR -74 188 25 600 312 73 28 chr9 95882707 95883024 -21979603 - MLT1I LTR MaLR -8 401 71 369 324 30 14 chr9 95883683 95883864 -21978763 + MIR SINE MIR 3 184 -62 1109 229 98 81 chr9 95883903 95884436 -21978191 - MLT1H LTR MaLR -1 548 7 365 232 56 84 chr9 95885140 95885282 -21977345 - MIR SINE MIR -43 219 82 371 277 50 28 chr9 95885578 95885719 -21976908 + MIR SINE MIR 65 208 -54 259 350 68 0 chr9 95886440 95886557 -21976070 - MIR3 SINE MIR -73 135 11 210 367 41 0 chr9 95887142 95887240 -21975387 + MIR3 SINE MIR 100 201 -7 242 275 104 16 chr9 95887369 95887562 -21975065 - L1MC/D LINE L1 -2056 5752 5543 456 19 0 0 chr9 95887637 95887690 -21974937 + (ATG)n Simple_repeat Simple_repeat 1 53 0 344 314 32 16 chr9 95887763 95887887 -21974740 - MIR SINE MIR -124 138 13 528 372 63 27 chr9 95888285 95888761 -21973866 - L3 LINE CR1 -137 1440 948 203 388 35 35 chr9 95889164 95889280 -21973347 - MIR SINE MIR -119 143 28 401 361 93 0 chr9 95889767 95889961 -21972666 - MIR SINE MIR -2 260 49 204 277 228 0 chr9 95890009 95890110 -21972517 - MER5A DNA MER1_type -7 182 59 260 306 138 38 chr9 95890957 95891117 -21971510 + MIR SINE MIR 2 177 -85 295 366 68 11 chr9 95891630 95891821 -21970806 + MIR SINE MIR 5 206 -56 241 320 60 30 chr9 95891829 95891929 -21970698 - MIR SINE MIR -111 151 49 193 247 79 45 chr9 95891998 95892087 -21970540 + L3 LINE CR1 920 1011 -566 2203 233 49 69 chr9 95892484 95892644 -21969983 + L1MD2 LINE L1 4296 4458 -1901 2242 120 0 0 chr9 95892644 95892943 -21969684 + AluSc SINE Alu 5 303 -6 2203 233 49 69 chr9 95892943 95893060 -21969567 + L1MD2 LINE L1 4458 4576 -1783 2118 138 45 23 chr9 95893060 95893414 -21969213 + THE1B LTR MaLR 1 362 -2 2203 233 49 69 chr9 95893414 95894171 -21968456 + L1MD2 LINE L1 4576 5347 -1012 2340 93 0 0 chr9 95894171 95894471 -21968156 + AluY SINE Alu 1 300 -11 2203 233 49 69 chr9 95894471 95894622 -21968005 + L1MD2 LINE L1 5347 5500 -859 2636 161 9 2 chr9 95894622 95895075 -21967552 + L1PA16 LINE L1 5706 6161 -5 2203 233 49 69 chr9 95895075 95895322 -21967305 + L1MD2 LINE L1 5500 5706 -653 1151 229 36 36 chr9 95895325 95895683 -21966944 + MLT1A1 LTR MaLR 1 358 -7 1374 238 66 70 chr9 95895694 95896298 -21966329 + L1MD2 LINE L1 5709 6310 -49 230 300 14 0 chr9 95897088 95897158 -21965469 - MIR SINE MIR -34 228 158 271 290 26 48 chr9 95897521 95897673 -21964954 - MIR SINE MIR -62 146 16 1435 252 17 67 chr9 95897730 95897952 -21964675 + LTR16C LTR ERVL 50 239 -252 3558 163 14 34 chr9 95897952 95898693 -21963934 - L1MB2 LINE L1 0 6171 5446 1435 252 17 67 chr9 95898693 95898935 -21963692 + LTR16C LTR ERVL 239 491 0 28 48 0 0 chr9 95899544 95899586 -21963041 + AT_rich Low_complexity Low_complexity 1 42 0 430 295 78 36 chr9 95899714 95899907 -21962720 - L3 LINE CR1 -53 1524 1324 4557 195 9 7 chr9 95900767 95901722 -21960905 - L1MB2 LINE L1 -1752 4394 3438 7434 55 3 0 chr9 95901752 95903066 -21959561 - L1PA7 LINE L1 -12 6142 4824 2897 82 0 18 chr9 95903070 95903450 -21959177 - L1PA7 LINE L1 0 6154 5782 8864 90 5 1 chr9 95903451 95904657 -21957970 - L1PA7 LINE L1 -1308 4838 3628 7543 103 9 0 chr9 95904724 95905823 -21956804 + L1P LINE L1 2332 3440 -2706 2199 202 12 80 chr9 95905819 95905899 -21956728 - L1MB2 LINE L1 -2681 3465 3381 * 2089 115 0 0 chr9 95905899 95906220 -21956407 - AluSc SINE Alu 0 322 2 2199 202 12 80 chr9 95906220 95906800 -21955827 - L1MB2 LINE L1 -2765 3381 2849 1811 176 3 0 chr9 95906812 95907102 -21955525 + L1PB3 LINE L1 5859 6149 -5 345 100 0 0 chr9 95907344 95907394 -21955233 + (TTCC)n Simple_repeat Simple_repeat 3 52 0 203 291 19 78 chr9 95907538 95907641 -21954986 - L2 LINE L2 -43 3229 3133 377 292 113 12 chr9 95907757 95907967 -21954660 - MIR SINE MIR -3 259 32 232 170 189 0 chr9 95908747 95908800 -21953827 + MLT1E2 LTR MaLR 1 63 -486 282 308 87 10 chr9 95908898 95909002 -21953625 + MLT1E2 LTR MaLR 256 367 -182 21 0 0 0 chr9 95909107 95909128 -21953499 + AT_rich Low_complexity Low_complexity 1 21 0 2415 83 17 20 chr9 95909128 95909476 -21953151 - L1MA2 LINE L1 0 6304 5958 344 250 26 0 chr9 95909993 95910069 -21952558 - MER2 DNA MER2_type 0 345 268 4899 172 22 32 chr9 95910160 95910682 -21951945 - L1PA16 LINE L1 -9 6157 5631 315 0 0 0 chr9 95910682 95910717 -21951910 + (TG)n Simple_repeat Simple_repeat 2 36 0 4899 172 22 32 chr9 95910717 95911684 -21950943 - L1PA16 LINE L1 -535 5631 4688 1134 181 0 0 chr9 95911717 95911910 -21950717 - MER2 DNA MER2_type -152 193 1 375 358 23 28 chr9 95912529 95912705 -21949922 + MIR3 SINE MIR 9 183 -25 418 340 96 26 chr9 95912790 95913061 -21949566 + L2 LINE L2 2564 2853 -461 969 236 16 89 chr9 95913061 95913374 -21949253 + MLT1E2 LTR MaLR 337 626 0 277 240 80 0 chr9 95913958 95914033 -21948594 - MIR3 SINE MIR -32 176 96 259 125 107 36 chr9 95914089 95914145 -21948482 + L1MA8 LINE L1 3879 3938 -2208 26 0 0 0 chr9 95914145 95914171 -21948456 + AT_rich Low_complexity Low_complexity 1 26 0 1295 210 4 15 chr9 95914186 95914442 -21948185 + L1MA8 LINE L1 3929 4183 -1963 1712 155 36 7 chr9 95914442 95914720 -21947907 + AluSx SINE Alu 11 296 -16 207 114 0 0 chr9 95914740 95914775 -21947852 + (GGA)n Simple_repeat Simple_repeat 3 37 0 6349 166 32 12 chr9 95914802 95914899 -21947728 + L1MA8 LINE L1 4151 4245 -2046 351 0 0 0 chr9 95914899 95914938 -21947689 + (CA)n Simple_repeat Simple_repeat 2 40 0 6349 166 32 12 chr9 95914938 95916936 -21945691 + L1MA8 LINE L1 4245 6285 -6 26 30 0 0 chr9 95916937 95916970 -21945657 + AT_rich Low_complexity Low_complexity 1 33 0 199 324 127 32 chr9 95917507 95917760 -21944867 - L2 LINE L2 -353 2961 2685 2829 173 10 10 chr9 95917950 95918414 -21944213 + L1MB3 LINE L1 5686 6152 -31 2251 103 10 0 chr9 95918414 95918724 -21943903 - AluSp SINE Alu 0 313 1 2829 173 10 10 chr9 95918724 95918755 -21943872 + L1MB3 LINE L1 6151 6181 -2 859 142 0 8 chr9 95918772 95918906 -21943721 + FLAM_C SINE Alu 1 133 0 194 266 16 16 chr9 95919615 95919679 -21942948 + MIR SINE MIR 81 144 -64 271 287 85 73 chr9 95920399 95920440 -21942187 - MIR3 SINE MIR -15 193 154 489 286 138 27 chr9 95920440 95920737 -21941890 - MER102a DNA MER1_type 0 330 1 271 287 85 73 chr9 95920737 95920859 -21941768 - MIR3 SINE MIR -54 154 28 411 255 39 0 chr9 95921005 95921107 -21941520 - L2 LINE L2 -1 3312 3207 534 349 40 50 chr9 95921108 95921486 -21941141 + L2 LINE L2 2881 3254 -18 263 313 104 0 chr9 95922124 95922220 -21940407 + L3 LINE CR1 1256 1361 -216 227 353 66 16 chr9 95922273 95922395 -21940232 - L2 LINE L2 -9 3263 3136 191 355 16 0 chr9 95922485 95922547 -21940080 + MIR SINE MIR 53 115 -147 239 351 26 35 chr9 95922655 95922769 -21939858 + L3 LINE CR1 1413 1525 -52 1979 145 0 0 chr9 95923047 95923425 -21939202 - AluSx SINE Alu 0 399 22 327 337 169 4 chr9 95923432 95923675 -21938952 + L2 LINE L2 2470 2752 -562 262 235 61 78 chr9 95923778 95923893 -21938734 + L2 LINE L2 2926 3038 -275 282 56 0 0 chr9 95924909 95924945 -21937682 + (TTA)n Simple_repeat Simple_repeat 2 37 0 219 264 174 45 chr9 95925077 95925232 -21937395 + MIR3 SINE MIR 34 208 0 396 0 0 0 chr9 95925949 95925993 -21936634 + (GGAA)n Simple_repeat Simple_repeat 1 44 0 704 188 6 17 chr9 95925993 95926174 -21936453 + GA-rich Low_complexity Low_complexity 2 180 0 674 300 30 13 chr9 95926435 95926668 -21935959 - MIR SINE MIR -12 250 14 215 337 0 43 chr9 95926765 95926857 -21935770 - MIR SINE MIR -62 200 113 231 335 145 18 chr9 95926999 95927220 -21935407 + MIR SINE MIR 9 257 -5 198 103 0 0 chr9 95927223 95927252 -21935375 + (CAT)n Simple_repeat Simple_repeat 1 29 0 258 236 9 104 chr9 95927332 95927438 -21935189 + MIR SINE MIR 57 152 -110 416 278 131 17 chr9 95927806 95927982 -21934645 + MIR SINE MIR 5 200 -62 401 339 28 17 chr9 95928212 95928389 -21934238 - MIR SINE MIR -3 259 81 284 300 25 0 chr9 95929204 95929284 -21933343 - MIR SINE MIR -93 115 34 2808 148 15 15 chr9 95929493 95929951 -21932676 + L1PA15 LINE L1 5708 6165 0 22 0 0 0 chr9 95929953 95929975 -21932652 + AT_rich Low_complexity Low_complexity 1 22 0 289 282 0 0 chr9 95930286 95930364 -21932263 + MIR SINE MIR 124 201 -61 2243 84 3 3 chr9 95931113 95931440 -21931187 + AluSq SINE Alu 1 327 0 345 298 42 60 chr9 95931623 95931791 -21930836 + MIR SINE MIR 20 184 -78 25 0 0 0 chr9 95931991 95932016 -21930611 + AT_rich Low_complexity Low_complexity 1 25 0 267 296 97 58 chr9 95932295 95932501 -21930126 + MIR SINE MIR 17 230 -32 22 35 0 0 chr9 95932532 95932561 -21930066 + AT_rich Low_complexity Low_complexity 1 29 0 195 270 0 0 chr9 95933134 95933171 -21929456 + L2 LINE L2 3255 3291 -22 304 337 12 47 chr9 95933477 95933646 -21928981 + MIR SINE MIR 100 262 0 198 228 326 22 chr9 95934518 95934610 -21928017 - MIR SINE MIR -129 133 14 193 325 12 12 chr9 95934911 95934991 -21927636 - MIR3 SINE MIR -18 190 111 323 198 12 126 chr9 95935083 95935250 -21927377 + L1MCa LINE L1 1957 2104 -4322 255 355 82 0 chr9 95935651 95935761 -21926866 - MIR SINE MIR -79 183 65 363 269 0 0 chr9 95937103 95937233 -21925394 + GA-rich Low_complexity Low_complexity 1 130 0 21 0 0 0 chr9 95937516 95937537 -21925090 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr9 95937537 95937558 -21925069 + (GA)n Simple_repeat Simple_repeat 2 22 0 356 291 112 107 chr9 95938166 95938425 -21924202 - L1M2 LINE L1 -5553 1296 1040 207 0 0 0 chr9 95938425 95938448 -21924179 + (CCG)n Simple_repeat Simple_repeat 1 23 0 356 291 112 107 chr9 95938448 95938989 -21923638 - L1M2 LINE L1 -5809 1040 492 516 105 0 0 chr9 95940367 95940443 -21922184 + (TA)n Simple_repeat Simple_repeat 1 76 0 23 0 0 0 chr9 95940657 95940680 -21921947 + AT_rich Low_complexity Low_complexity 1 23 0 315 340 26 19 chr9 95941610 95941766 -21920861 - MIR3 SINE MIR -31 177 21 692 305 35 31 chr9 95942465 95942724 -21919903 + MIR SINE MIR 3 262 0 412 326 11 19 chr9 95942824 95943021 -21919606 - MIR SINE MIR -48 214 18 325 274 85 0 chr9 95943205 95943311 -21919316 + MIR SINE MIR 40 154 -108 182 203 0 152 chr9 95944007 95944032 -21918595 - L3 LINE CR1 -27 1550 1538 425 248 57 14 chr9 95944032 95944173 -21918454 - MER5B DNA MER1_type 0 178 32 228 189 78 67 chr9 95944951 95945041 -21917586 + MIR SINE MIR 34 124 -84 285 237 27 33 chr9 95945328 95945432 -21917195 + MIR SINE MIR 42 147 -61 302 261 22 102 chr9 95945634 95945948 -21916679 + L1MC5 LINE L1 7639 7927 -34 226 298 30 61 chr9 95946017 95946148 -21916479 - MIR3 SINE MIR -68 140 14 287 321 38 9 chr9 95946275 95946381 -21916246 - MER20B DNA MER1_type -604 179 71 862 253 38 25 chr9 95946570 95946807 -21915820 + MIR SINE MIR 13 252 -10 553 212 32 156 chr9 95947128 95947468 -21915159 - L2 LINE L2 -7 3306 3009 362 251 65 50 chr9 95947506 95947677 -21914950 + MIR3 SINE MIR 35 208 0 252 277 181 0 chr9 95949021 95949104 -21913523 - MIR3 SINE MIR -50 158 61 213 345 12 0 chr9 95950028 95950112 -21912515 + L2 LINE L2 3188 3272 0 203 225 25 0 chr9 95950733 95950773 -21911854 - MIR SINE MIR -16 246 206 223 289 0 0 chr9 95950890 95950942 -21911685 + L2 LINE L2 3204 3255 -17 210 91 0 0 chr9 95950951 95950984 -21911643 + (TGAA)n Simple_repeat Simple_repeat 2 34 0 449 290 127 26 chr9 95951159 95951233 -21911394 - MARNA DNA Mariner -39 547 482 1260 204 90 25 chr9 95951233 95951451 -21911176 + MER2 DNA MER2_type 1 280 -64 28 29 0 0 chr9 95951451 95951486 -21911141 + AT_rich Low_complexity Low_complexity 1 35 0 1260 204 90 25 chr9 95951486 95951556 -21911071 + MER2 DNA MER2_type 280 344 0 449 290 127 26 chr9 95951556 95951788 -21910839 - MARNA DNA Mariner -104 482 210 335 323 20 94 chr9 95951930 95952131 -21910496 - MIR3 SINE MIR -17 191 6 273 331 39 24 chr9 95952363 95952490 -21910137 - L2 LINE L2 -21 3251 3123 215 326 62 21 chr9 95952888 95953081 -21909546 + L2 LINE L2 3112 3312 -1 2485 99 0 0 chr9 95953393 95953705 -21908922 - AluSx SINE Alu 0 312 1 427 316 7 0 chr9 95953819 95953955 -21908672 - L2 LINE L2 -531 2783 2647 244 228 18 0 chr9 95954603 95954660 -21907967 + (TCCA)n Simple_repeat Simple_repeat 4 61 0 227 186 0 17 chr9 95954665 95954724 -21907903 + CT-rich Low_complexity Low_complexity 4 61 0 333 160 34 0 chr9 95954736 95954865 -21907762 + (TCCA)n Simple_repeat Simple_repeat 1 133 0 678 202 82 11 chr9 95956126 95956309 -21906318 - MIR SINE MIR -1 261 66 798 193 151 10 chr9 95956451 95956643 -21905984 - MER20 DNA MER1_type 0 219 1 220 321 57 9 chr9 95956961 95957067 -21905560 - L2 LINE L2 -4 3309 3199 200 246 36 45 chr9 95957071 95957181 -21905446 - MIR3 SINE MIR -13 195 87 200 325 38 32 chr9 95957769 95957926 -21904701 + L2 LINE L2 2932 3089 -183 857 279 12 24 chr9 95958036 95958290 -21904337 + MIR SINE MIR 12 262 0 432 181 93 163 chr9 95958683 95958953 -21903674 - ORSL DNA AcHobo -7 268 18 226 333 12 12 chr9 95959054 95959135 -21903492 - MIR3 SINE MIR -40 168 88 1359 144 55 4 chr9 95959353 95959609 -21903018 + L1MA8 LINE L1 6022 6290 -1 256 215 34 184 chr9 95959713 95959946 -21902681 - L2 LINE L2 0 3313 3116 241 232 18 0 chr9 95960777 95960833 -21901794 - L2 LINE L2 -3 3310 3254 2314 85 0 3 chr9 95962182 95962493 -21900134 - AluSq SINE Alu 0 310 1 406 275 69 19 chr9 95962576 95962736 -21899891 - MIR SINE MIR -70 192 25 * 501 236 58 45 chr9 95962732 95962952 -21899675 - MIR SINE MIR -12 250 30 351 271 23 38 chr9 95963169 95963302 -21899325 - MIR SINE MIR -58 204 74 195 42 0 0 chr9 95963943 95963967 -21898660 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 303 297 45 32 chr9 95964210 95964365 -21898262 - MIR3 SINE MIR 0 208 52 350 316 19 25 chr9 95964401 95964559 -21898068 + MIR SINE MIR 8 164 -98 22 35 0 0 chr9 95964611 95964640 -21897987 + AT_rich Low_complexity Low_complexity 1 29 0 347 247 108 43 chr9 95964913 95965056 -21897571 + MIR SINE MIR 29 185 -68 1965 197 35 11 chr9 95965278 95965409 -21897218 - MLT1B LTR MaLR -5 385 259 363 44 0 0 chr9 95965409 95965454 -21897173 + (TC)n Simple_repeat Simple_repeat 1 45 0 1965 197 35 11 chr9 95965454 95965698 -21896929 - MLT1B LTR MaLR -131 259 1 231 295 152 0 chr9 95966182 95966294 -21896333 + MIR SINE MIR 79 207 -55 232 227 0 114 chr9 95967453 95967541 -21895086 - MIR3 SINE MIR -41 167 90 207 139 0 0 chr9 95968101 95968137 -21894490 + (GA)n Simple_repeat Simple_repeat 2 37 0 229 300 38 13 chr9 95968696 95968812 -21893815 - MIR SINE MIR -70 138 20 315 350 43 5 chr9 95970054 95970240 -21892387 + MIR SINE MIR 70 262 0 279 0 0 0 chr9 95970292 95970323 -21892304 + (TG)n Simple_repeat Simple_repeat 2 32 0 273 125 0 0 chr9 95970326 95970382 -21892245 + (TA)n Simple_repeat Simple_repeat 1 56 0 306 318 55 0 chr9 95970436 95970546 -21892081 + MIR3 SINE MIR 68 183 -25 21 0 0 0 chr9 95972481 95972502 -21890125 + AT_rich Low_complexity Low_complexity 1 21 0 1099 181 20 0 chr9 95972631 95972830 -21889797 - MER3 DNA MER1_type -1 208 6 411 268 59 26 chr9 95972906 95973059 -21889568 + MIR SINE MIR 105 262 0 233 240 0 0 chr9 95973141 95973191 -21889436 - L2 LINE L2 -219 3053 3004 565 268 40 31 chr9 95973266 95973490 -21889137 + L1MA9 LINE L1 6049 6274 -38 226 239 0 0 chr9 95974386 95974432 -21888195 + (TTCA)n Simple_repeat Simple_repeat 2 47 0 251 170 0 0 chr9 95974432 95974479 -21888148 - L2 LINE L2 0 3313 3267 250 309 37 20 chr9 95974492 95974605 -21888022 - MIR SINE MIR -79 129 36 387 113 0 0 chr9 95975102 95975164 -21887463 + (GGGA)n Simple_repeat Simple_repeat 4 65 0 326 331 44 16 chr9 95975194 95975442 -21887185 + L3 LINE CR1 1250 1504 -73 230 378 45 49 chr9 95975550 95975796 -21886831 - L2 LINE L2 -9 3263 3019 1698 238 58 38 chr9 95975845 95976349 -21886278 - LTR33 LTR ERVL -3 518 5 192 267 0 0 chr9 95976623 95976668 -21885959 - L2 LINE L2 -91 3181 3137 24 0 0 0 chr9 95977216 95977240 -21885387 + AT_rich Low_complexity Low_complexity 1 24 0 194 331 29 29 chr9 95977549 95977685 -21884942 - MIR3 SINE MIR -53 155 20 337 323 18 47 chr9 95978243 95978412 -21884215 + MIR SINE MIR 36 198 -64 417 310 57 26 chr9 95978599 95978828 -21883799 + MIR SINE MIR 4 239 -23 481 337 56 16 chr9 95979525 95979777 -21882850 + MIR SINE MIR 1 262 0 24 0 0 0 chr9 95979971 95979995 -21882632 + AT_rich Low_complexity Low_complexity 1 24 0 188 269 19 0 chr9 95981205 95981257 -21881370 + MIR3 SINE MIR 102 154 -54 289 324 59 69 chr9 95982533 95982737 -21879890 - L2 LINE L2 -30 3242 3041 511 123 0 12 chr9 95983086 95983167 -21879460 - MADE1 DNA Mariner 0 80 1 2437 186 19 2 chr9 95983763 95984188 -21878439 - MSTB1 LTR MaLR 0 432 1 258 309 126 35 chr9 95984473 95984703 -21877924 + MIR SINE MIR 12 262 0 239 229 0 12 chr9 95984903 95984986 -21877641 + GA-rich Low_complexity Low_complexity 3 84 0 325 376 24 5 chr9 95985672 95985877 -21876750 - MIR SINE MIR -18 244 36 186 43 0 0 chr9 95986295 95986318 -21876309 + (TTG)n Simple_repeat Simple_repeat 2 24 0 328 225 0 34 chr9 95986887 95986976 -21875651 - MER103 DNA DNA -71 95 10 310 371 100 0 chr9 95987145 95987285 -21875342 + MER91A DNA MER1_type 22 175 -21 181 339 0 17 chr9 95987353 95987412 -21875215 + MIR SINE MIR 77 134 -74 275 286 57 0 chr9 95987740 95987845 -21874782 - MIR SINE MIR -24 238 128 1759 174 3 16 chr9 95988500 95988810 -21873817 - AluJo SINE Alu -6 306 1 289 242 188 23 chr9 95989737 95989782 -21872845 + MIR SINE MIR 110 146 -116 783 250 23 34 chr9 95989782 95990046 -21872581 - MIR SINE MIR 0 262 2 289 242 188 23 chr9 95990046 95990128 -21872499 + MIR SINE MIR 146 258 -4 222 333 0 11 chr9 95990627 95990714 -21871913 - L2 LINE L2 -1 3271 3186 382 257 68 14 chr9 95991337 95991485 -21871142 + MIR SINE MIR 90 245 -17 326 314 37 23 chr9 95991858 95992066 -21870561 - MIR3 SINE MIR -55 207 3 299 300 64 21 chr9 95992576 95992716 -21869911 - L1ME LINE L1 -287 5834 5689 279 79 0 0 chr9 95992930 95992968 -21869659 + (TG)n Simple_repeat Simple_repeat 1 38 0 1098 155 103 0 chr9 95993009 95993203 -21869424 + MER20 DNA MER1_type 6 219 0 338 298 7 43 chr9 95993373 95993514 -21869113 + MIR3 SINE MIR 60 195 -13 197 341 0 0 chr9 95993939 95994021 -21868606 - MIR SINE MIR -91 117 36 23 33 0 0 chr9 95994654 95994684 -21867943 + AT_rich Low_complexity Low_complexity 1 30 0 471 220 177 14 chr9 95994820 95994961 -21867666 - MER5A DNA MER1_type 0 189 26 183 311 40 0 chr9 95995060 95995134 -21867493 - L2 LINE L2 -8 3264 3188 227 348 22 0 chr9 95995233 95995322 -21867305 - MIR SINE MIR -74 134 44 451 295 0 0 chr9 95995473 95995585 -21867042 + MIR3 SINE MIR 89 200 -8 238 304 98 0 chr9 95996146 95996258 -21866369 + MIR3 SINE MIR 58 180 -28 277 232 29 0 chr9 95996546 95996615 -21866012 - MER91A DNA MER1_type -13 183 113 220 342 144 18 chr9 95996710 95996821 -21865806 + L2 LINE L2 3136 3260 -12 186 258 0 0 chr9 95996825 95996887 -21865740 + GA-rich Low_complexity Low_complexity 3 64 0 239 301 107 0 chr9 95996994 95997097 -21865530 - MIR SINE MIR -70 192 79 903 200 33 38 chr9 95998169 95998379 -21864248 + MER3 DNA MER1_type 1 209 0 374 333 97 35 chr9 95998384 95998612 -21864015 - MIR SINE MIR -9 253 12 335 158 20 52 chr9 95998947 95999048 -21863579 + L1ME LINE L1 5600 5700 -421 379 297 125 5 chr9 95999253 95999445 -21863182 + MIR SINE MIR 6 220 -42 3043 94 17 0 chr9 95999452 95999867 -21862760 + L1PA13 LINE L1 5741 6162 -1 185 224 0 20 chr9 95999877 95999926 -21862701 + MIR SINE MIR 213 260 -2 186 209 0 0 chr9 96000044 96000087 -21862540 + (CATATA)n Simple_repeat Simple_repeat 1 43 0 21 0 0 0 chr9 96000182 96000203 -21862424 + AT_rich Low_complexity Low_complexity 1 21 0 186 143 0 0 chr9 96000210 96000245 -21862382 + (TTA)n Simple_repeat Simple_repeat 1 35 0 205 318 18 18 chr9 96000309 96000419 -21862208 - MIR SINE MIR -66 196 87 2297 106 0 3 chr9 96000841 96001144 -21861483 - AluSg SINE Alu -8 302 1 325 290 42 51 chr9 96001476 96001690 -21860937 - L1ME LINE L1 -308 5813 5602 244 182 36 0 chr9 96001725 96001780 -21860847 + (CA)n Simple_repeat Simple_repeat 2 58 0 237 299 0 15 chr9 96001884 96001951 -21860676 - MIR SINE MIR -105 157 92 556 281 33 7 chr9 96002854 96003007 -21859620 + MIR SINE MIR 10 166 -96 403 165 18 18 chr9 96003539 96003648 -21858979 + (TGAA)n Simple_repeat Simple_repeat 3 111 0 316 39 77 0 chr9 96004581 96004633 -21857994 + (TTATA)n Simple_repeat Simple_repeat 5 60 0 342 241 0 37 chr9 96004638 96004716 -21857911 + (TA)n Simple_repeat Simple_repeat 1 75 -29 2206 107 7 0 chr9 96004716 96005014 -21857613 + AluSg SINE Alu 1 300 -10 342 241 0 37 chr9 96005014 96005043 -21857584 + (TA)n Simple_repeat Simple_repeat 75 104 0 267 322 15 25 chr9 96005103 96005249 -21857378 + MIR3 SINE MIR 15 158 -63 386 328 69 42 chr9 96005542 96005731 -21856896 - MIR SINE MIR -13 249 56 2556 150 18 2 chr9 96005916 96006369 -21856258 + L1MA7 LINE L1 5323 5782 -509 305 289 13 0 chr9 96006372 96006448 -21856179 + Tigger5 DNA MER2_type 1 77 -2246 323 87 0 0 chr9 96006472 96006518 -21856109 - Tigger5 DNA MER2_type -36 2287 2242 * 480 116 0 47 chr9 96006508 96006594 -21856033 + Tigger5 DNA MER2_type 2242 2323 0 2715 154 16 12 chr9 96006594 96007100 -21855527 + L1MA7 LINE L1 5784 6291 0 261 255 71 78 chr9 96007857 96007998 -21854629 + MIR3 SINE MIR 4 143 -65 217 294 220 9 chr9 96008439 96008548 -21854079 + MIR SINE MIR 20 151 -57 866 189 15 53 chr9 96008550 96008708 -21853919 - MER105 DNA DNA -2 202 52 923 202 72 0 chr9 96008708 96008901 -21853726 + MER3 DNA MER1_type 2 208 -1 866 189 15 53 chr9 96008901 96008948 -21853679 - MER105 DNA DNA -152 52 5 549 55 0 0 chr9 96009916 96009989 -21852638 + (TCCA)n Simple_repeat Simple_repeat 1 73 0 346 262 12 0 chr9 96010994 96011078 -21851549 - MIR3 SINE MIR 0 208 124 216 235 15 103 chr9 96011096 96011164 -21851463 + L2 LINE L2 3251 3312 -1 285 276 13 0 chr9 96011856 96011932 -21850695 - MIR SINE MIR -111 151 75 284 239 22 33 chr9 96012805 96012897 -21849730 - L3 LINE CR1 -1 1576 1486 185 261 204 49 chr9 96012924 96013066 -21849561 - L3 LINE CR1 -180 1397 1234 756 258 44 8 chr9 96013340 96013592 -21849035 + Charlie1 DNA MER1_type 3 263 -2498 274 239 0 0 chr9 96013567 96013634 -21848993 + Charlie1 DNA MER1_type 2628 2694 -67 * 346 323 69 28 chr9 96013683 96014002 -21848625 - L2 LINE L2 -474 2840 2509 196 303 34 91 chr9 96014001 96014176 -21848451 - L3 LINE CR1 -340 1237 1073 * 320 376 85 12 chr9 96014525 96014690 -21847937 + MIR3 SINE MIR 20 196 -12 201 39 0 0 chr9 96015190 96015216 -21847411 + (TA)n Simple_repeat Simple_repeat 1 26 0 311 306 20 0 chr9 96015406 96015504 -21847123 + CT-rich Low_complexity Low_complexity 1 100 0 428 76 0 15 chr9 96015759 96015825 -21846802 + (TGGA)n Simple_repeat Simple_repeat 1 65 0 2227 108 26 0 chr9 96015865 96016170 -21846457 - AluSq SINE Alu 0 313 1 315 368 24 24 chr9 96016173 96016339 -21846288 + L2 LINE L2 2690 2855 -459 379 288 37 25 chr9 96016652 96016815 -21845812 + MIR SINE MIR 98 262 0 236 275 87 0 chr9 96017241 96017310 -21845317 - L2 LINE L2 -10 3303 3229 579 217 147 0 chr9 96018024 96018153 -21844474 + FRAM SINE Alu 1 146 -30 270 384 8 8 chr9 96018756 96018881 -21843746 + MIR SINE MIR 20 144 -118 235 324 110 21 chr9 96019909 96020054 -21842573 + MIR3 SINE MIR 2 159 -49 2293 95 7 7 chr9 96020420 96020724 -21841903 + AluSq SINE Alu 1 304 -9 658 286 71 5 chr9 96020822 96021032 -21841595 - MIR SINE MIR -22 240 17 299 311 10 10 chr9 96021718 96021821 -21840806 + MIR3 SINE MIR 58 160 -48 2083 136 7 3 chr9 96021827 96022136 -21840491 - AluSg SINE Alu 0 310 1 449 219 51 148 chr9 96022136 96022332 -21840295 - MER5B DNA MER1_type -1 177 1 699 172 178 6 chr9 96022343 96022500 -21840127 + MER5A DNA MER1_type 6 189 0 249 311 97 10 chr9 96022568 96022671 -21839956 - L2 LINE L2 -13 3259 3148 277 200 31 15 chr9 96022758 96022823 -21839804 - L2 LINE L2 -1 3312 3247 408 275 9 9 chr9 96023418 96023527 -21839100 + MIR SINE MIR 40 148 -60 334 298 91 0 chr9 96023760 96023881 -21838746 - MIR SINE MIR -128 134 3 344 291 142 24 chr9 96024296 96024423 -21838204 - L2 LINE L2 -5 3267 3126 385 308 8 8 chr9 96024520 96024637 -21837990 + L2 LINE L2 3190 3306 -7 565 293 63 42 chr9 96024688 96024927 -21837700 - MIR SINE MIR -6 256 13 401 269 265 16 chr9 96025303 96025548 -21837079 - L2 LINE L2 0 3313 3008 204 235 20 0 chr9 96026043 96026094 -21836533 + (TTCA)n Simple_repeat Simple_repeat 4 55 0 561 303 92 60 chr9 96026140 96026421 -21836206 - L2 LINE L2 -7 3265 2976 424 333 33 20 chr9 96026587 96026913 -21835714 - L1MC4a LINE L1 -335 5835 5529 253 376 16 24 chr9 96027290 96027415 -21835212 - L2 LINE L2 0 3272 3149 262 393 30 7 chr9 96027558 96027693 -21834934 - MIR SINE MIR -101 161 24 231 279 0 29 chr9 96028413 96028481 -21834146 - MIR SINE MIR -93 169 104 653 289 145 51 chr9 96028715 96028758 -21833869 - L2 LINE L2 -456 2858 2820 3644 168 21 3 chr9 96028758 96029437 -21833190 + L1PB4 LINE L1 5466 6156 0 653 289 145 51 chr9 96029437 96029957 -21832670 - L2 LINE L2 -494 2820 2242 435 270 69 6 chr9 96030487 96030646 -21831981 - MIR SINE MIR 0 262 94 1657 191 0 28 chr9 96030852 96031171 -21831456 + AluJo SINE Alu 1 310 -2 315 307 68 43 chr9 96032370 96032533 -21830094 + MIR3 SINE MIR 15 181 -27 210 312 40 48 chr9 96032787 96032912 -21829715 + L2 LINE L2 3149 3272 0 236 300 0 0 chr9 96033077 96033137 -21829490 + MIR3 SINE MIR 100 159 -49 476 339 68 45 chr9 96033153 96033794 -21828833 - L2 LINE L2 -1 3271 2546 363 220 0 0 chr9 96034079 96034170 -21828457 + (TG)n Simple_repeat Simple_repeat 2 92 0 393 293 49 0 chr9 96034548 96034671 -21827956 + MIR3 SINE MIR 66 194 -14 498 292 46 21 chr9 96034774 96034967 -21827660 - MIR3 SINE MIR 0 208 10 379 353 45 0 chr9 96037060 96037193 -21825434 - L2 LINE L2 0 3272 3134 2529 81 0 0 chr9 96038619 96038929 -21823698 + AluY SINE Alu 1 310 -1 26 0 0 0 chr9 96039178 96039204 -21823423 + AT_rich Low_complexity Low_complexity 1 26 0 501 289 37 147 chr9 96039509 96040262 -21822365 + L1ME2 LINE L1 19 688 -5431 735 306 87 38 chr9 96040626 96041181 -21821446 + L1ME2 LINE L1 2246 2827 -3302 357 304 85 55 chr9 96041499 96041537 -21821090 + L1ME2 LINE L1 4113 4148 -1981 2382 57 0 7 chr9 96041537 96041834 -21820793 + AluY SINE Alu 1 295 -16 357 304 85 55 chr9 96041834 96041996 -21820631 + L1ME2 LINE L1 4148 4319 -1810 347 257 9 51 chr9 96042105 96042319 -21820308 + L1ME2 LINE L1 4388 4592 -1537 357 284 107 98 chr9 96042477 96042493 -21820134 + L1ME2 LINE L1 4766 4780 -1349 2095 95 4 0 chr9 96042493 96042766 -21819861 + AluSp SINE Alu 1 274 -39 357 284 107 98 chr9 96042766 96042970 -21819657 + L1ME2 LINE L1 4780 4981 -1148 2064 133 3 0 chr9 96042970 96043288 -21819339 + AluSq SINE Alu 1 319 0 357 284 107 98 chr9 96043288 96043512 -21819115 + L1ME2 LINE L1 4981 5216 -913 513 273 70 84 chr9 96043535 96044236 -21818391 + L1ME2 LINE L1 5241 5931 -216 354 315 102 42 chr9 96045102 96045318 -21817309 + MIR SINE MIR 21 249 -13 225 0 0 0 chr9 96046006 96046031 -21816596 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 1625 146 56 17 chr9 96046049 96046336 -21816291 + AluJb SINE Alu 1 298 -14 429 324 7 0 chr9 96047343 96047491 -21815136 + L3 LINE CR1 1317 1465 -112 22 35 0 0 chr9 96048576 96048605 -21814022 + AT_rich Low_complexity Low_complexity 1 29 0 433 319 48 11 chr9 96048944 96049132 -21813495 + MIR SINE MIR 68 262 0 189 292 156 42 chr9 96049389 96049485 -21813142 + MIR SINE MIR 156 262 0 2868 13 0 6 chr9 96051421 96051739 -21810888 + AluYb8 SINE Alu 1 316 -2 23 0 0 0 chr9 96052496 96052519 -21810108 + AT_rich Low_complexity Low_complexity 1 23 0 427 287 77 43 chr9 96052926 96053135 -21809492 - MIR SINE MIR 0 262 47 221 298 95 24 chr9 96053223 96053307 -21809320 - L2 LINE L2 -30 3242 3153 253 193 284 28 chr9 96054002 96054111 -21808516 - MIR SINE MIR -13 249 113 924 182 29 0 chr9 96054121 96054291 -21808336 + MER3 DNA MER1_type 2 129 -80 193 206 79 48 chr9 96054305 96054368 -21808259 - MIR SINE MIR -95 113 49 273 270 11 22 chr9 96055000 96055089 -21807538 - MIR SINE MIR -63 145 58 416 243 21 62 chr9 96055343 96055487 -21807140 - L2 LINE L2 0 3313 3176 287 311 20 80 chr9 96055586 96055737 -21806890 - MIR SINE MIR -113 149 8 218 272 24 136 chr9 96056305 96056430 -21806197 + L2 LINE L2 3141 3251 -21 1141 162 1 0 chr9 96056746 96057344 -21805283 - ALR/Alpha Satellite centromeric 0 598 1 1156 153 6 2 chr9 96057357 96058363 -21804264 - ALR/Alpha Satellite centromeric 0 1010 1 1104 165 7 0 chr9 96058376 96059718 -21802909 - ALR/Alpha Satellite centromeric 0 1351 1 1134 167 7 2 chr9 96059825 96063191 -21799436 - ALR/Alpha Satellite centromeric 0 3384 1 955 185 0 3 chr9 96063293 96063543 -21799084 - ALR/Alpha Satellite centromeric 0 249 1 1123 159 2 0 chr9 96063556 96064223 -21798404 - ALR/Alpha Satellite centromeric 0 668 1 1156 169 7 1 chr9 96064236 96067813 -21794814 - ALR/Alpha Satellite centromeric 0 3598 1 1104 173 7 2 chr9 96067946 96070450 -21792177 - ALR/Alpha Satellite centromeric 0 2518 1 273 346 44 15 chr9 96070562 96070698 -21791929 + MIR3 SINE MIR 30 169 -39 1064 244 28 0 chr9 96071054 96071271 -21791356 + MER58A DNA MER1_type 2 224 0 1194 122 0 0 chr9 96071393 96071557 -21791070 + AluSg/x SINE Alu 135 298 -14 358 275 150 0 chr9 96071732 96071852 -21790775 - MIR SINE MIR -67 141 4 739 299 81 58 chr9 96072546 96072981 -21789646 + LTR67 LTR ERVL 109 553 -4 272 228 16 16 chr9 96073392 96073519 -21789108 + CT-rich Low_complexity Low_complexity 1 127 0 283 216 46 37 chr9 96074238 96074325 -21788302 + MIR3 SINE MIR 103 191 -17 348 279 93 21 chr9 96075257 96075397 -21787230 + MIR SINE MIR 102 251 -11 2113 116 33 7 chr9 96075432 96075735 -21786892 - AluSx SINE Alu -1 311 1 553 259 84 6 chr9 96075763 96075929 -21786698 - MIR SINE MIR -78 184 6 429 344 45 22 chr9 96075931 96076155 -21786472 - MIR SINE MIR -12 250 22 466 313 51 18 chr9 96076477 96076694 -21785933 + MIR SINE MIR 34 257 -5 330 335 43 11 chr9 96076735 96076920 -21785707 + MIR3 SINE MIR 9 199 -9 365 313 124 74 chr9 96077912 96078330 -21784297 - L2 LINE L2 0 3272 2834 908 222 92 10 chr9 96078483 96078690 -21783937 + MER58A DNA MER1_type 1 224 0 944 268 99 3 chr9 96078709 96079023 -21783604 - MER2 DNA MER2_type 0 344 1 360 311 72 57 chr9 96079570 96079779 -21782848 - MIR SINE MIR -19 243 32 1719 184 36 0 chr9 96079850 96080159 -21782468 + MER2 DNA MER2_type 1 320 -25 26 0 0 0 chr9 96080243 96080269 -21782358 + AT_rich Low_complexity Low_complexity 1 26 0 310 264 191 34 chr9 96080286 96080464 -21782163 - MIR SINE MIR -54 208 3 276 257 14 54 chr9 96081892 96081966 -21780661 - L2 LINE L2 0 3272 3202 189 309 0 0 chr9 96081968 96082023 -21780604 + MIR SINE MIR 207 261 -1 199 389 33 0 chr9 96082057 96082147 -21780480 + L3 LINE CR1 1426 1518 -59 477 382 47 54 chr9 96082366 96082978 -21779649 + L2 LINE L2 2227 2834 -480 1796 133 4 0 chr9 96082978 96083275 -21779352 - AluSc SINE Alu 0 342 45 385 301 106 56 chr9 96083346 96083668 -21778959 + L2 LINE L2 2935 3272 0 250 286 113 25 chr9 96084639 96084842 -21777785 - MIR SINE MIR -14 248 28 427 264 65 19 chr9 96084934 96085089 -21777538 + MIR SINE MIR 76 237 -25 254 322 33 25 chr9 96085418 96085539 -21777088 - L3 LINE CR1 -90 1487 1366 193 231 19 37 chr9 96085520 96085599 -21777028 - L3b LINE CR1 -330 1253 1178 * 2011 137 0 20 chr9 96085941 96086247 -21776380 + AluSg SINE Alu 1 300 -10 336 148 0 0 chr9 96086288 96086349 -21776278 + (TCCC)n Simple_repeat Simple_repeat 4 64 0 320 227 45 11 chr9 96087119 96087207 -21775420 + L1MC4 LINE L1 6613 6703 -1339 233 90 0 119 chr9 96087213 96087280 -21775347 - L1MCa LINE L1 -4362 2064 2006 402 129 0 74 chr9 96087286 96087449 -21775178 + (TA)n Simple_repeat Simple_repeat 2 152 0 553 296 126 35 chr9 96087707 96088024 -21774603 - L2 LINE L2 -1 3312 2967 499 317 43 0 chr9 96088459 96088623 -21774004 - MIR3 SINE MIR -10 198 28 287 177 16 0 chr9 96088663 96088725 -21773902 + CT-rich Low_complexity Low_complexity 2 64 0 24 32 0 0 chr9 96089433 96089464 -21773163 + AT_rich Low_complexity Low_complexity 1 31 0 63 0 0 0 chr9 96089812 96089875 -21772752 + AT_rich Low_complexity Low_complexity 1 63 0 216 67 0 0 chr9 96090110 96090140 -21772487 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 1291 309 98 53 chr9 96090146 96091228 -21771399 - L2 LINE L2 -445 2869 1739 2123 93 21 4 chr9 96091682 96091984 -21770643 + AluSp SINE Alu 1 307 0 2405 96 0 6 chr9 96093279 96093593 -21769034 + AluSx SINE Alu 1 312 0 223 263 138 12 chr9 96093867 96093947 -21768680 + L2 LINE L2 3183 3272 0 394 322 51 81 chr9 96094406 96094816 -21767811 - L2 LINE L2 -2 3270 2873 2235 125 0 0 chr9 96094858 96095163 -21767464 - AluSx SINE Alu -6 306 2 427 323 8 8 chr9 96095932 96096065 -21766562 - MIR SINE MIR -113 149 17 227 146 0 0 chr9 96096682 96096723 -21765904 - L2 LINE L2 0 3313 3273 223 291 0 0 chr9 96096731 96096786 -21765841 + (TG)n Simple_repeat Simple_repeat 2 56 0 269 285 25 19 chr9 96097229 96097387 -21765240 + (TCTA)n Simple_repeat Simple_repeat 3 161 0 254 298 16 50 chr9 96097701 96097822 -21764805 + MIR SINE MIR 33 149 -59 278 324 16 87 chr9 96097840 96098025 -21764602 - MIR SINE MIR -71 191 20 1678 180 23 7 chr9 96098240 96098582 -21764045 - AluJb SINE Alu 0 312 1 229 252 88 81 chr9 96098957 96099121 -21763506 - MIR3 SINE MIR -71 137 2 619 183 14 70 chr9 96099157 96099299 -21763328 - MER94 DNA DNA 0 134 1 301 345 52 17 chr9 96099788 96099962 -21762665 - MIR3 SINE MIR -6 202 23 424 276 68 13 chr9 96100030 96100193 -21762434 + MIR SINE MIR 18 186 -64 1818 171 2 89 chr9 96100226 96100640 -21761987 - L1MB1 LINE L1 0 6168 5791 469 284 0 37 chr9 96101330 96101464 -21761163 + MIR3 SINE MIR 72 200 -8 219 167 0 0 chr9 96102054 96102096 -21760531 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 260 336 117 8 chr9 96102180 96102308 -21760319 + L2 LINE L2 3123 3264 -8 228 67 0 0 chr9 96103184 96103214 -21759413 + (CA)n Simple_repeat Simple_repeat 1 30 0 329 320 150 13 chr9 96104683 96104917 -21757710 + L3 LINE CR1 1311 1576 -1 2131 121 10 7 chr9 96105030 96105336 -21757291 + AluSq SINE Alu 1 307 -6 197 274 123 0 chr9 96105528 96105601 -21757026 + MIR SINE MIR 88 169 -93 317 277 21 0 chr9 96106299 96106393 -21756234 - MIR SINE MIR -109 153 58 2133 146 7 0 chr9 96106902 96107210 -21755417 - AluSx SINE Alu -2 310 1 284 287 176 7 chr9 96107701 96107837 -21754790 - MIR SINE MIR -16 246 88 346 253 36 53 chr9 96108582 96108736 -21753891 + MIR SINE MIR 7 154 -61 189 0 0 0 chr9 96108891 96108912 -21753715 + (T)n Simple_repeat Simple_repeat 1 21 0 286 283 123 43 chr9 96109399 96109586 -21753041 + MIR SINE MIR 23 224 -38 267 161 0 0 chr9 96110100 96110156 -21752471 + T-rich Low_complexity Low_complexity 1 56 0 2466 82 0 0 chr9 96110636 96110940 -21751687 + AluY SINE Alu 1 304 -7 738 222 62 10 chr9 96111484 96111678 -21750949 + MER3 DNA MER1_type 6 209 0 506 281 107 0 chr9 96111689 96111867 -21750760 + MIR SINE MIR 53 249 -13 2367 98 13 10 chr9 96111896 96112203 -21750424 - AluSc SINE Alu -1 308 1 196 324 29 7 chr9 96112544 96112680 -21749947 + L2 LINE L2 2945 3083 -189 222 295 26 13 chr9 96113197 96113275 -21749352 + L2 LINE L2 3232 3310 -3 245 312 11 11 chr9 96113517 96113610 -21749017 + GA-rich Low_complexity Low_complexity 1 93 0 241 246 236 13 chr9 96113750 96113865 -21748762 - MIR SINE MIR -72 190 54 278 305 126 20 chr9 96113962 96114113 -21748514 - MIR SINE MIR -47 215 49 186 136 91 23 chr9 96116163 96116207 -21746420 + L2 LINE L2 3267 3313 0 186 138 0 0 chr9 96117436 96117465 -21745162 + MIR SINE MIR 115 143 -65 261 75 57 0 chr9 96118505 96118558 -21744069 + (TG)n Simple_repeat Simple_repeat 2 57 0 2457 74 0 0 chr9 96118801 96119097 -21743530 - AluY SINE Alu -15 296 1 456 294 77 0 chr9 96119200 96119370 -21743257 + MER117 DNA MER1_type 1 183 -14 257 289 179 19 chr9 96119714 96119870 -21742757 + MIR SINE MIR 20 200 -62 1971 118 62 3 chr9 96119915 96120204 -21742423 + AluSq SINE Alu 1 306 -7 267 54 0 0 chr9 96120549 96120586 -21742041 + (TG)n Simple_repeat Simple_repeat 2 38 0 271 339 16 16 chr9 96121131 96121258 -21741369 + MIR3 SINE MIR 76 202 -6 183 80 0 0 chr9 96121316 96121341 -21741286 + (GA)n Simple_repeat Simple_repeat 2 26 0 215 360 45 0 chr9 96121593 96121682 -21740945 - MIR3 SINE MIR -15 193 101 762 299 69 0 chr9 96121964 96122181 -21740446 + MIR SINE MIR 15 246 -16 212 83 0 28 chr9 96122183 96122219 -21740408 + (CTG)n Simple_repeat Simple_repeat 1 35 0 236 248 224 32 chr9 96140636 96140761 -21721866 - MIR3 SINE MIR -33 175 27 31 68 0 0 chr9 96141530 96141589 -21721038 + AT_rich Low_complexity Low_complexity 1 59 0 2616 156 21 8 chr9 96141840 96142315 -21720312 - L1MB1 LINE L1 0 6168 5688 240 200 31 0 chr9 96144161 96144226 -21718401 + L1MD3 LINE L1 7929 7995 0 23 0 0 0 chr9 96144601 96144624 -21718003 + AT_rich Low_complexity Low_complexity 1 23 0 214 309 136 0 chr9 96145641 96145722 -21716905 + L2 LINE L2 3181 3272 0 315 85 0 0 chr9 96145848 96145895 -21716732 + (TG)n Simple_repeat Simple_repeat 2 48 0 252 260 163 8 chr9 96146122 96146245 -21716382 + L2 LINE L2 2900 3041 -231 427 301 20 65 chr9 96147196 96147442 -21715185 - MIR SINE MIR -26 236 2 198 0 0 0 chr9 96149493 96149515 -21713112 + (A)n Simple_repeat Simple_repeat 1 22 0 285 336 0 0 chr9 96150553 96150660 -21711967 + MIR SINE MIR 47 153 -55 430 325 36 6 chr9 96150953 96151119 -21711508 + MIR SINE MIR 20 190 -72 236 240 33 116 chr9 96151254 96151375 -21711252 - MIR3 SINE MIR -17 191 81 457 258 16 16 chr9 96151997 96152125 -21710502 + MIR3 SINE MIR 74 201 -7 212 117 50 17 chr9 96152898 96152958 -21709669 + CT-rich Low_complexity Low_complexity 1 62 0 194 193 18 0 chr9 96153436 96153493 -21709134 + CT-rich Low_complexity Low_complexity 4 61 0 552 299 14 12 chr9 96153931 96154164 -21708463 - L1ME LINE L1 -507 5655 5428 482 367 6 0 chr9 96154168 96154337 -21708290 - MIR3 SINE MIR -3 205 36 530 300 69 36 chr9 96154356 96154633 -21707994 + Charlie8 DNA MER1_type 1 286 -2131 512 262 76 31 chr9 96155609 96155834 -21706793 + MIR SINE MIR 1 235 -27 247 277 102 29 chr9 96155981 96156118 -21706509 - MER103 DNA DNA -17 149 3 514 365 62 38 chr9 96156242 96156261 -21706366 + L2 LINE L2 2851 2868 -445 1834 167 3 0 chr9 96156261 96156593 -21706034 - AluSx SINE Alu 0 333 1 514 365 62 38 chr9 96156593 96157024 -21705603 + L2 LINE L2 2868 3313 0 489 289 15 4 chr9 96157049 96157212 -21705415 - MIR SINE MIR -37 171 15 208 180 0 20 chr9 96157887 96157937 -21704690 + A-rich Low_complexity Low_complexity 4 52 0 404 319 69 14 chr9 96158343 96158487 -21704140 + MIR SINE MIR 90 241 -21 182 329 73 12 chr9 96158679 96158761 -21703866 - L2 LINE L2 -213 3059 2973 2100 94 7 24 chr9 96158994 96159318 -21703309 - AluSq SINE Alu 0 319 1 341 250 40 10 chr9 96159319 96159419 -21703208 - MIR SINE MIR -6 256 154 282 305 78 16 chr9 96159490 96159618 -21703009 - MIR SINE MIR -109 153 18 424 155 12 36 chr9 96160222 96160306 -21702321 + L2 LINE L2 3232 3313 0 222 288 88 0 chr9 96160447 96160527 -21702100 + L3 LINE CR1 1372 1458 -119 * 229 377 22 51 chr9 96160524 96160662 -21701965 - L2 LINE L2 -2 3270 3137 225 303 55 37 chr9 96161823 96161932 -21700695 - MIR3 SINE MIR -17 191 81 299 343 145 12 chr9 96162169 96162341 -21700286 + MIR SINE MIR 2 196 -66 278 232 0 29 chr9 96162893 96162962 -21699665 + GA-rich Low_complexity Low_complexity 2 68 0 536 260 33 0 chr9 96163015 96163154 -21699473 - MIR SINE MIR -63 145 32 3282 100 2 24 chr9 96163933 96164394 -21698233 - L1PA13 LINE L1 -4 6159 5709 189 243 0 0 chr9 96164753 96164790 -21697837 - MIR SINE MIR -142 120 84 331 316 51 0 chr9 96164803 96164901 -21697726 - L2 LINE L2 -1 3271 3169 1015 232 57 74 chr9 96165340 96165676 -21696951 - LTR16C LTR ERVL -76 415 86 647 213 66 105 chr9 96166477 96166735 -21695892 + L2 LINE L2 3065 3312 -1 200 180 0 20 chr9 96166792 96166842 -21695785 + GA-rich Low_complexity Low_complexity 1 49 0 211 327 40 20 chr9 96166869 96166970 -21695657 - MIR SINE MIR -41 221 119 256 323 159 20 chr9 96167033 96167234 -21695393 + MIR SINE MIR 18 246 -16 209 286 60 36 chr9 96167896 96167980 -21694647 + MIR3 SINE MIR 95 180 -28 660 350 8 16 chr9 96168612 96168855 -21693772 + MIR SINE MIR 17 257 -5 433 319 127 19 chr9 96170134 96170448 -21692179 + L2 LINE L2 2459 2806 -508 393 303 61 50 chr9 96170522 96170799 -21691828 + L2 LINE L2 2976 3255 -17 374 337 12 18 chr9 96170798 96170961 -21691666 - MIR3 SINE MIR -11 197 36 * 509 269 64 12 chr9 96171723 96171894 -21690733 + MIR SINE MIR 29 208 -54 310 215 123 0 chr9 96171894 96171959 -21690668 - MER91B DNA MER1_type -117 73 1 2041 99 0 0 chr9 96172102 96172394 -21690233 - L1P LINE L1 -1193 4953 4662 985 47 8 16 chr9 96172394 96172521 -21690106 + L1PA8 LINE L1 6047 6172 0 559 244 16 0 chr9 96172656 96172779 -21689848 + MER3 DNA MER1_type 1 125 -84 195 253 0 80 chr9 96179669 96179744 -21682883 + L2 LINE L2 525 593 -2721 203 372 95 47 chr9 96197958 96198254 -21664373 + L2 LINE L2 2963 3272 0 513 282 114 37 chr9 96199328 96199764 -21662863 + L2 LINE L2 2753 3235 -78 208 195 0 24 chr9 96199872 96199913 -21662714 - L2 LINE L2 -15 3257 3218 224 307 73 138 chr9 96200727 96200945 -21661682 - L3 LINE CR1 -113 1464 1261 496 317 142 37 chr9 96201104 96201618 -21661009 - L3 LINE CR1 -322 1255 688 2067 91 0 0 chr9 96201710 96201964 -21660663 + AluSx SINE Alu 1 254 -58 393 274 236 29 chr9 96202385 96202593 -21660034 + MIR SINE MIR 2 252 -10 264 241 29 124 chr9 96204469 96204606 -21658021 + L2 LINE L2 3136 3259 -13 27 62 0 0 chr9 96204860 96204908 -21657719 + AT_rich Low_complexity Low_complexity 1 48 0 286 287 32 0 chr9 96205261 96205355 -21657272 + MIR SINE MIR 110 206 -56 274 226 0 71 chr9 96205662 96205746 -21656881 + MER3 DNA MER1_type 132 209 0 247 203 40 0 chr9 96205909 96205983 -21656644 - MIR SINE MIR -115 147 71 349 352 8 0 chr9 96206536 96206661 -21655966 - MIR3 SINE MIR 0 208 83 348 268 132 0 chr9 96206821 96206986 -21655641 - MIR SINE MIR -16 246 58 616 298 58 13 chr9 96207358 96207583 -21655044 - MIR SINE MIR -21 241 7 206 235 12 0 chr9 96208969 96209050 -21653577 + (TTCA)n Simple_repeat Simple_repeat 3 84 0 211 306 56 9 chr9 96209187 96209295 -21653332 - L2 LINE L2 -23 3249 3137 235 322 60 91 chr9 96209935 96210233 -21652394 + L2 LINE L2 2935 3223 -49 297 75 0 0 chr9 96210438 96210478 -21652149 + (GAATG)n Simple_repeat Simple_repeat 3 42 0 328 214 22 22 chr9 96210782 96210871 -21651756 + MIR SINE MIR 89 177 -85 184 321 49 0 chr9 96211610 96211691 -21650936 - MIR SINE MIR -10 252 168 229 257 9 35 chr9 96212916 96213029 -21649598 + (CA)n Simple_repeat Simple_repeat 1 110 0 380 291 23 12 chr9 96214849 96215021 -21647606 + (TTCA)n Simple_repeat Simple_repeat 3 176 0 438 351 62 34 chr9 96215029 96215382 -21647245 - L2 LINE L2 -3 3269 2907 201 333 65 26 chr9 96215486 96215639 -21646988 - L2 LINE L2 -195 3077 2919 183 254 48 16 chr9 96215769 96215832 -21646795 - L2 LINE L2 -540 2774 2710 247 286 12 0 chr9 96216231 96216315 -21646312 - MIR SINE MIR -15 247 163 190 290 14 14 chr9 96216484 96216553 -21646074 - MIR SINE MIR -176 86 18 407 280 16 39 chr9 96217406 96217588 -21645039 + CT-rich Low_complexity Low_complexity 2 179 0 332 305 32 48 chr9 96217752 96217939 -21644688 - MIR3 SINE MIR -18 190 7 200 250 23 0 chr9 96218616 96218660 -21643967 - L2 LINE L2 -18 3254 3210 786 261 29 14 chr9 96218904 96219111 -21643516 + MER63A DNA MER1_type 1 210 0 296 306 102 0 chr9 96219235 96219333 -21643294 + L2 LINE L2 3152 3259 -13 398 297 0 0 chr9 96219340 96219451 -21643176 + MIR SINE MIR 37 147 -61 308 203 29 0 chr9 96219463 96219532 -21643095 - Charlie8 DNA MER1_type 0 2417 2347 2370 81 0 0 chr9 96219558 96219843 -21642784 + AluSx SINE Alu 1 285 -27 582 158 0 0 chr9 96220024 96220125 -21642502 - FLAM_A SINE Alu -1 141 41 425 272 76 43 chr9 96220155 96220339 -21642288 - L1ME3 LINE L1 -45 6117 5928 242 218 0 18 chr9 96220356 96220411 -21642216 - L1ME3 LINE L1 -198 5964 5911 690 249 53 71 chr9 96220641 96220922 -21641705 - Charlie8 DNA MER1_type -2141 276 1 394 294 90 17 chr9 96221196 96221373 -21641254 - MIR SINE MIR -12 250 61 259 294 0 0 chr9 96221641 96221709 -21640918 + (TTCA)n Simple_repeat Simple_repeat 1 68 0 194 0 0 37 chr9 96221840 96221867 -21640760 + (TAA)n Simple_repeat Simple_repeat 2 27 0 634 274 67 14 chr9 96222191 96222399 -21640228 + MIR SINE MIR 17 235 -27 499 237 4 8 chr9 96222424 96222670 -21639957 + (ATG)n Simple_repeat Simple_repeat 1 244 0 23 0 0 0 chr9 96223980 96224003 -21638624 + AT_rich Low_complexity Low_complexity 1 23 0 186 43 0 0 chr9 96224349 96224372 -21638255 + (TTTTA)n Simple_repeat Simple_repeat 4 26 0 2491 81 0 0 chr9 96224445 96224742 -21637885 - AluSc SINE Alu -12 297 1 499 346 0 21 chr9 96225361 96225549 -21637078 - MER5A DNA MER1_type -5 184 1 339 179 0 0 chr9 96225582 96225649 -21636978 + (CA)n Simple_repeat Simple_repeat 1 67 0 386 280 23 15 chr9 96226212 96226344 -21636283 - MIR SINE MIR -109 153 21 206 287 58 46 chr9 96226952 96227039 -21635588 - MIR3 SINE MIR -7 201 114 389 326 26 26 chr9 96227048 96227241 -21635386 - MIR3 SINE MIR 0 208 16 291 273 13 0 chr9 96227824 96227901 -21634726 - L2 LINE L2 0 3272 3195 396 0 0 0 chr9 96227963 96228007 -21634620 + (TCCA)n Simple_repeat Simple_repeat 3 46 0 218 341 113 35 chr9 96228104 96228333 -21634294 - L2 LINE L2 -110 3162 2916 465 327 71 28 chr9 96228344 96228696 -21633931 + L2 LINE L2 2929 3295 -18 360 133 0 0 chr9 96228707 96228767 -21633860 + (TGGA)n Simple_repeat Simple_repeat 2 61 0 302 306 50 62 chr9 96229557 96229717 -21632910 - MIR3 SINE MIR -50 158 1 293 276 117 37 chr9 96230094 96230257 -21632370 + MIR SINE MIR 34 209 -53 197 303 82 41 chr9 96231222 96231344 -21631283 - L2 LINE L2 -218 3054 2928 348 333 47 6 chr9 96231824 96231995 -21630632 - MIR3 SINE MIR -1 207 30 307 268 94 87 chr9 96232315 96232570 -21630057 - L1ME4a LINE L1 -1 6120 5868 1515 189 17 17 chr9 96232570 96232696 -21629931 + AluJo SINE Alu 2 127 -185 297 0 0 0 chr9 96232696 96232729 -21629898 + (TAA)n Simple_repeat Simple_repeat 1 33 0 1515 189 17 17 chr9 96232729 96232893 -21629734 + AluJo SINE Alu 126 292 -20 307 268 94 87 chr9 96232893 96233179 -21629448 - L1ME4a LINE L1 -253 5868 5575 1526 98 5 5 chr9 96233457 96233708 -21628919 + AluSg/x SINE Alu 79 329 0 545 84 0 0 chr9 96233800 96233871 -21628756 - Alu SINE Alu -246 72 2 238 250 57 73 chr9 96234351 96234475 -21628152 - L2 LINE L2 -210 3103 2982 443 340 24 10 chr9 96234848 96235057 -21627570 - MIR SINE MIR -31 231 20 506 237 77 67 chr9 96235759 96235811 -21626816 - MIR SINE MIR -54 208 158 1474 200 55 14 chr9 96235811 96236101 -21626526 - AluJo SINE Alu -10 302 1 506 237 77 67 chr9 96236101 96236242 -21626385 - MIR SINE MIR -104 158 13 221 292 0 0 chr9 96236958 96237023 -21625604 + MIR SINE MIR 39 103 -105 615 262 29 118 chr9 96237524 96237556 -21625071 + L2 LINE L2 2666 2699 -614 1911 88 0 4 chr9 96237556 96237794 -21624833 - AluSg SINE Alu -10 300 64 615 262 29 118 chr9 96237794 96238479 -21624148 + L2 LINE L2 2699 3313 0 317 269 13 0 chr9 96239231 96239309 -21623318 + (CACCAT)n Simple_repeat Simple_repeat 5 83 0 597 266 36 17 chr9 96239314 96239545 -21623082 - MIR SINE MIR -7 255 22 202 211 0 0 chr9 96240369 96240407 -21622220 + MIR SINE MIR 109 146 -116 412 253 38 44 chr9 96240479 96240637 -21621990 + MIR SINE MIR 104 260 -2 265 228 0 122 chr9 96240743 96240866 -21621761 + MIR SINE MIR 50 157 -105 256 255 35 24 chr9 96241197 96241307 -21621320 - MIR SINE MIR -61 147 79 260 342 50 0 chr9 96241699 96241819 -21620808 - MIR3 SINE MIR -25 183 58 195 100 0 0 chr9 96241843 96241873 -21620754 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 654 62 0 0 chr9 96242017 96242097 -21620530 + MADE1 DNA Mariner 1 80 0 247 342 106 35 chr9 96242170 96242369 -21620258 - L2 LINE L2 -339 2975 2763 331 359 10 20 chr9 96242714 96242909 -21619718 - MIR SINE MIR -33 229 37 185 310 35 23 chr9 96243321 96243408 -21619219 - L2 LINE L2 -49 3223 3136 551 318 17 3 chr9 96243454 96243669 -21618958 - MIR SINE MIR -17 245 31 334 318 80 11 chr9 96244542 96244718 -21617909 + MIR SINE MIR 53 240 -22 233 0 62 0 chr9 96248445 96248477 -21614150 + (GAAA)n Simple_repeat Simple_repeat 1 34 0 355 176 0 66 chr9 96249285 96249376 -21613251 + MIR SINE MIR 85 169 -93 299 202 11 0 chr9 96249935 96250029 -21612598 + (TA)n Simple_repeat Simple_repeat 2 96 0 204 182 0 0 chr9 96250274 96250318 -21612309 + A-rich Low_complexity Low_complexity 1 44 0 245 346 98 7 chr9 96250889 96251042 -21611585 - Tigger8 DNA MER2_type -18 648 482 251 214 14 0 chr9 96251237 96251307 -21611320 + (TA)n Simple_repeat Simple_repeat 2 72 0 270 0 0 0 chr9 96251310 96251340 -21611287 + (CA)n Simple_repeat Simple_repeat 1 30 0 439 289 33 0 chr9 96251442 96251594 -21611033 + MIR SINE MIR 75 231 -31 548 331 45 7 chr9 96251616 96251885 -21610742 - Tigger8 DNA MER2_type -338 328 50 300 158 0 0 chr9 96252294 96252351 -21610276 + (CA)n Simple_repeat Simple_repeat 2 58 0 624 183 38 30 chr9 96253485 96253616 -21609011 + L1ME3A LINE L1 6034 6165 -5 284 277 45 9 chr9 96253872 96253991 -21608636 + MIR SINE MIR 38 159 -72 2109 137 10 0 chr9 96254211 96254510 -21608117 - AluSx SINE Alu -10 302 1 182 304 51 13 chr9 96255370 96255449 -21607178 - L2 LINE L2 -9 3304 3223 201 231 8 143 chr9 96255572 96255768 -21606859 - L2 LINE L2 -309 2963 2796 2177 143 24 0 chr9 96255806 96256134 -21606493 - THE1B LTR MaLR -1 363 28 1293 257 48 14 chr9 96256148 96256502 -21606125 - LTR16C LTR ERVL -29 462 97 977 193 11 11 chr9 96257242 96257429 -21605198 - MER5A DNA MER1_type 0 189 3 21 0 0 0 chr9 96257499 96257520 -21605107 + AT_rich Low_complexity Low_complexity 1 21 0 249 370 10 21 chr9 96257639 96257831 -21604796 - L2 LINE L2 -256 3016 2827 235 333 83 0 chr9 96257842 96257938 -21604689 - L2 LINE L2 -232 3040 2937 240 122 0 0 chr9 96258272 96258313 -21604314 + (CA)n Simple_repeat Simple_repeat 2 42 0 522 333 4 18 chr9 96258953 96259178 -21603449 - MIR SINE MIR -1 261 40 603 203 145 29 chr9 96260494 96260735 -21601892 + MER33 DNA MER1_type 3 271 -53 2129 124 20 0 chr9 96260737 96261043 -21601584 + AluSx SINE Alu 1 312 0 391 194 0 0 chr9 96261080 96261147 -21601480 + MER33 DNA MER1_type 258 324 0 216 250 0 0 chr9 96261516 96261564 -21601063 + L2 LINE L2 3265 3312 -1 917 206 33 6 chr9 96261616 96261796 -21600831 + MER58A DNA MER1_type 29 213 -11 464 174 60 141 chr9 96261833 96261971 -21600656 + FRAM SINE Alu 22 149 -163 354 23 0 0 chr9 96261971 96262014 -21600613 + (CA)n Simple_repeat Simple_repeat 2 44 0 308 224 0 0 chr9 96262320 96262387 -21600240 - L2 LINE L2 -3 3310 3244 189 338 0 14 chr9 96262445 96262519 -21600108 + L2 LINE L2 3200 3272 0 485 295 134 9 chr9 96262635 96262859 -21599768 + MIR SINE MIR 11 262 0 204 179 0 0 chr9 96265146 96265185 -21597442 + A-rich Low_complexity Low_complexity 1 39 0 196 300 0 0 chr9 96265192 96265242 -21597385 - L2 LINE L2 -13 3259 3210 286 243 143 43 chr9 96265769 96265909 -21596718 - MER5A DNA MER1_type -2 187 34 211 316 84 11 chr9 96266360 96266455 -21596172 + MIR3 SINE MIR 55 156 -52 319 320 61 12 chr9 96266512 96266692 -21595935 + MIR SINE MIR 60 248 -14 381 22 0 0 chr9 96267612 96267658 -21594969 + (CA)n Simple_repeat Simple_repeat 1 46 0 332 321 83 30 chr9 96268405 96268573 -21594054 - MIR SINE MIR -1 261 85 198 280 21 21 chr9 96268890 96268983 -21593644 - MIR SINE MIR -72 136 44 306 250 104 42 chr9 96268994 96269138 -21593489 + MIR SINE MIR 1 153 -109 183 162 0 0 chr9 96269200 96269237 -21593390 + (ATG)n Simple_repeat Simple_repeat 3 39 0 * 282 116 0 0 chr9 96269235 96269278 -21593349 + (GGA)n Simple_repeat Simple_repeat 2 44 0 235 353 108 4 chr9 96269626 96269858 -21592769 + L2 LINE L2 2503 2758 -556 1678 173 3 27 chr9 96270118 96270413 -21592214 + AluJb SINE Alu 1 288 -24 409 172 81 0 chr9 96270465 96270564 -21592063 - MIR SINE MIR -54 208 102 206 306 56 14 chr9 96270651 96270723 -21591904 - MIR SINE MIR -185 77 3 278 347 56 7 chr9 96270948 96271092 -21591535 + MIR SINE MIR 58 208 -54 24 0 0 0 chr9 96271651 96271675 -21590952 + AT_rich Low_complexity Low_complexity 1 24 0 305 302 95 16 chr9 96271727 96271853 -21590774 - MIR SINE MIR -86 176 41 225 83 0 0 chr9 96272613 96272649 -21589978 + L1MA10 LINE L1 6298 6333 -1 187 339 182 0 chr9 96272681 96272802 -21589825 + L2 LINE L2 2570 2712 -602 209 324 94 94 chr9 96272963 96273020 -21589607 + L2 LINE L2 2915 2971 -301 1843 122 44 37 chr9 96273020 96273314 -21589313 - AluSx SINE Alu -15 297 2 209 324 94 94 chr9 96273314 96273596 -21589031 + L2 LINE L2 2970 3254 -18 264 241 60 83 chr9 96274948 96275081 -21587546 - MIR SINE MIR -58 150 21 609 155 63 194 chr9 96275536 96275788 -21586839 - MER20 DNA MER1_type 0 219 1 257 298 0 44 chr9 96275788 96275894 -21586733 - MIR3 SINE MIR -48 160 58 263 319 22 0 chr9 96276305 96276396 -21586231 + MIR SINE MIR 53 145 -117 184 263 76 76 chr9 96276550 96276668 -21585959 - L2 LINE L2 -188 3084 2967 2206 112 7 0 chr9 96276669 96276963 -21585664 + AluSq SINE Alu 1 296 -17 484 250 147 30 chr9 96277105 96277337 -21585290 + MIR SINE MIR 4 262 0 2340 105 0 0 chr9 96277482 96277786 -21584841 + AluSq SINE Alu 1 304 -9 397 279 49 8 chr9 96277887 96278009 -21584618 + MIR SINE MIR 119 245 -17 285 258 15 0 chr9 96278023 96278089 -21584538 + (CAT)n Simple_repeat Simple_repeat 2 68 0 190 313 36 45 chr9 96278652 96278764 -21583863 - MIR SINE MIR -62 146 36 294 320 10 10 chr9 96278798 96278898 -21583729 + MIR SINE MIR 51 150 -112 422 329 32 0 chr9 96279013 96279168 -21583459 + MIR SINE MIR 93 252 -10 202 321 170 25 chr9 96279753 96280030 -21582597 + L3 LINE CR1 915 1231 -346 229 184 92 26 chr9 96280093 96280169 -21582458 - MIR SINE MIR -1 261 181 220 355 41 8 chr9 96280307 96280428 -21582199 + L3 LINE CR1 1338 1462 -115 2075 105 0 0 chr9 96281088 96281354 -21581273 + AluSx SINE Alu 16 281 -31 386 38 0 19 chr9 96281357 96281410 -21581217 + (GGAA)n Simple_repeat Simple_repeat 1 52 0 233 207 130 83 chr9 96281849 96282018 -21580609 + HAL1b LINE L1 1172 1348 0 396 203 164 23 chr9 96283588 96283716 -21578911 - MIR3 SINE MIR -25 183 38 222 278 0 19 chr9 96284202 96284256 -21578371 + MER5A DNA MER1_type 9 61 -128 334 172 283 0 chr9 96284306 96284405 -21578222 + MER5A DNA MER1_type 63 189 0 318 297 119 0 chr9 96284464 96284582 -21578045 + L2 LINE L2 3141 3272 0 4440 12 24 0 chr9 96285132 96285636 -21576991 + L1PA3 LINE L1 5640 6155 0 320 282 40 40 chr9 96285647 96285771 -21576856 - MIR3 SINE MIR -49 159 36 185 316 35 0 chr9 96286420 96286477 -21576150 + MIR SINE MIR 76 134 -74 375 347 57 26 chr9 96286537 96286889 -21575738 + L2 LINE L2 2522 2884 -430 859 202 113 123 chr9 96286914 96287090 -21575537 - MER113 DNA MER1_type? 0 521 345 2132 116 7 16 chr9 96287090 96287393 -21575234 + AluSq SINE Alu 1 300 -13 859 202 113 123 chr9 96287393 96287620 -21575007 - MER113 DNA MER1_type? -176 345 122 2895 3 0 0 chr9 96287620 96287925 -21574702 - AluYa5 SINE Alu -6 305 1 859 202 113 123 chr9 96287925 96288040 -21574587 - MER113 DNA MER1_type? -399 122 7 183 343 141 0 chr9 96288311 96288410 -21574217 + L2 LINE L2 3160 3272 0 217 330 43 9 chr9 96288658 96288773 -21573854 + MIR SINE MIR 31 149 -59 226 352 76 0 chr9 96289356 96289501 -21573126 + MIR SINE MIR 88 243 -19 31 0 0 0 chr9 96289963 96289994 -21572633 + AT_rich Low_complexity Low_complexity 1 31 0 373 312 70 13 chr9 96290327 96290484 -21572143 + MER117 DNA MER1_type 1 166 -31 334 302 50 14 chr9 96291156 96291295 -21571332 - MIR SINE MIR -92 170 27 666 290 106 41 chr9 96291353 96291795 -21570832 - L2 LINE L2 0 3313 2843 542 311 68 17 chr9 96292419 96292654 -21569973 - MIR SINE MIR -5 257 11 198 423 35 0 chr9 96292790 96292932 -21569695 - MIR SINE MIR -96 166 20 312 266 46 9 chr9 96293097 96293206 -21569421 + MIR3 SINE MIR 7 119 -89 251 274 0 16 chr9 96293548 96293610 -21569017 + L2 LINE L2 3253 3313 0 394 273 21 14 chr9 96294061 96294204 -21568423 + MIR SINE MIR 48 191 -71 180 125 0 0 chr9 96294522 96294554 -21568073 + (GA)n Simple_repeat Simple_repeat 1 32 0 626 113 9 0 chr9 96294620 96294735 -21567892 + (GA)n Simple_repeat Simple_repeat 1 116 0 268 290 65 40 chr9 96294871 96294995 -21567632 - MIR SINE MIR -62 146 20 250 301 49 16 chr9 96295547 96295730 -21566897 + L2 LINE L2 2920 3108 -164 197 262 33 49 chr9 96295892 96295953 -21566674 + MIR3 SINE MIR 101 160 -48 325 317 130 24 chr9 96295977 96296185 -21566442 + MIR SINE MIR 6 235 -27 363 304 66 33 chr9 96296991 96297172 -21565455 + MIR SINE MIR 14 200 -62 550 258 87 39 chr9 96297405 96297549 -21565078 + MIR SINE MIR 3 164 -98 1957 149 0 16 chr9 96297549 96297858 -21564769 + AluJb SINE Alu 1 304 -8 550 258 87 39 chr9 96297858 96297938 -21564689 + MIR SINE MIR 164 239 -23 1160 210 143 77 chr9 96298038 96298519 -21564108 + MLT1G LTR MaLR 38 590 0 849 217 45 54 chr9 96298539 96298760 -21563867 + MER58A DNA MER1_type 4 222 -2 267 177 161 0 chr9 96298832 96298894 -21563733 - MIR SINE MIR -112 150 79 267 317 41 24 chr9 96299825 96299948 -21562679 - L2 LINE L2 -25 3288 3164 216 294 0 0 chr9 96300365 96300432 -21562195 + C-rich Low_complexity Low_complexity 1 67 0 243 273 153 26 chr9 96300763 96300929 -21561698 + MIR SINE MIR 30 215 -47 363 329 40 9 chr9 96300939 96301164 -21561463 - MIR SINE MIR -11 251 20 426 237 52 37 chr9 96301652 96301738 -21560889 + MIR SINE MIR 105 195 -67 2524 80 0 3 chr9 96301738 96302049 -21560578 + AluY SINE Alu 2 311 0 426 237 52 37 chr9 96302049 96302097 -21560530 + MIR SINE MIR 195 241 -21 200 257 157 14 chr9 96302224 96302294 -21560333 + MIR SINE MIR 58 137 -71 367 290 139 20 chr9 96302463 96302715 -21559912 + L1MB7 LINE L1 3526 3807 -2339 310 240 42 31 chr9 96302736 96302832 -21559795 + L1MB7 LINE L1 4076 4172 -1974 5214 53 16 0 chr9 96302834 96303476 -21559151 + L1PA5 LINE L1 5503 6154 0 2464 106 0 0 chr9 96303492 96303804 -21558823 + AluSx SINE Alu 1 312 0 250 264 9 0 chr9 96304162 96304268 -21558359 + L1MB7 LINE L1 4151 4257 -1889 * 7281 138 17 14 chr9 96304248 96304898 -21557729 + L1MA3 LINE L1 3949 4596 -1709 2009 143 71 34 chr9 96304898 96305249 -21557378 - THE1B LTR MaLR 0 364 1 7281 138 17 14 chr9 96305249 96306946 -21555681 + L1MA3 LINE L1 4596 6305 0 5009 176 32 23 chr9 96306934 96308846 -21553781 + L1MB7 LINE L1 4244 6164 -20 * 316 306 86 27 chr9 96309165 96309351 -21553276 + MIR SINE MIR 65 261 -1 647 268 135 38 chr9 96309469 96309809 -21552818 + L2 LINE L2 2938 3310 -3 219 295 0 0 chr9 96309819 96309914 -21552713 + (TA)n Simple_repeat Simple_repeat 1 95 0 411 255 94 20 chr9 96310131 96310280 -21552347 + MLT1I LTR MaLR 244 403 -6 494 312 69 9 chr9 96310349 96310567 -21552060 - MIR SINE MIR -12 250 20 647 283 16 0 chr9 96310662 96310846 -21551781 - MIR SINE MIR -73 189 3 387 0 0 0 chr9 96311214 96311257 -21551370 + (TG)n Simple_repeat Simple_repeat 2 44 0 596 312 74 53 chr9 96311294 96312052 -21550575 + L2 LINE L2 2267 3054 -218 194 237 0 85 chr9 96312172 96312231 -21550396 + L2 LINE L2 3137 3190 -82 995 182 19 67 chr9 96312264 96312473 -21550154 - AluJb SINE Alu -113 199 1 255 328 138 6 chr9 96312781 96312955 -21549672 + MIR SINE MIR 66 262 0 24 32 0 0 chr9 96314021 96314052 -21548575 + AT_rich Low_complexity Low_complexity 1 31 0 234 111 0 0 chr9 96315257 96315293 -21547334 + MIR SINE MIR 117 152 -110 702 291 28 71 chr9 96315462 96315695 -21546932 + MLT1K LTR MaLR 211 422 -166 2449 81 0 0 chr9 96315695 96315990 -21546637 - AluSc SINE Alu -14 295 1 702 291 28 71 chr9 96315990 96316148 -21546479 + MLT1K LTR MaLR 422 585 -3 197 265 10 61 chr9 96316157 96316255 -21546372 + MIR SINE MIR 162 254 -8 238 365 48 32 chr9 96316993 96317245 -21545382 + L2 LINE L2 2588 2843 -471 218 328 79 74 chr9 96317287 96317476 -21545151 + L2 LINE L2 2902 3091 -181 433 310 6 35 chr9 96317909 96318080 -21544547 + MIR SINE MIR 3 168 -94 2276 107 3 0 chr9 96318348 96318656 -21543971 + AluSx SINE Alu 1 309 -3 678 324 36 9 chr9 96318811 96319036 -21543591 + MIR SINE MIR 12 242 -20 274 299 50 43 chr9 96320160 96320335 -21542292 - MIR SINE MIR -61 147 14 575 279 43 64 chr9 96321001 96321047 -21541580 + MIR SINE MIR 23 68 -194 2090 110 0 70 chr9 96321047 96321374 -21541253 + AluSx SINE Alu 1 304 -8 575 279 43 64 chr9 96321374 96321560 -21541067 + MIR SINE MIR 68 250 -12 2250 97 3 17 chr9 96322041 96322340 -21540287 + AluSx SINE Alu 1 295 -17 263 321 101 38 chr9 96322376 96322585 -21540042 - MIR SINE MIR -22 240 19 288 276 60 8 chr9 96322662 96322796 -21539831 + MIR3 SINE MIR 35 175 -33 355 296 71 30 chr9 96323120 96323289 -21539338 - MIR3 SINE MIR -3 205 30 252 289 97 0 chr9 96323364 96323501 -21539126 + MIR3 SINE MIR 6 162 -46 540 238 103 0 chr9 96323559 96323685 -21538942 + Charlie8 DNA MER1_type 72 210 -2207 307 340 61 20 chr9 96323896 96324143 -21538484 - L3 LINE CR1 -202 1375 1119 1318 228 129 26 chr9 96324400 96324817 -21537810 - MLT1C LTR MaLR -2 465 6 298 289 35 9 chr9 96324953 96325067 -21537560 + L2 LINE L2 3180 3296 -17 333 320 11 6 chr9 96326054 96326164 -21536463 + GA-rich Low_complexity Low_complexity 1 114 -62 869 143 0 0 chr9 96326164 96326297 -21536330 + FLAM_C SINE Alu 1 133 0 333 320 11 6 chr9 96326297 96326361 -21536266 + GA-rich Low_complexity Low_complexity 114 176 0 630 255 12 21 chr9 96326378 96326708 -21535919 + GA-rich Low_complexity Low_complexity 1 327 0 2334 108 3 0 chr9 96327138 96327444 -21535183 + AluSg SINE Alu 1 307 -3 251 282 39 19 chr9 96327501 96327604 -21535023 - MIR SINE MIR -117 145 41 630 211 72 0 chr9 96328322 96328474 -21534153 + MIR SINE MIR 34 196 -66 638 171 6 29 chr9 96328483 96328653 -21533974 + GA-rich Low_complexity Low_complexity 2 167 0 585 308 142 22 chr9 96328864 96329279 -21533348 - L2 LINE L2 -8 3305 2841 601 231 28 55 chr9 96329401 96329533 -21533094 - MIR SINE MIR -12 250 123 1846 161 27 7 chr9 96329533 96329832 -21532795 + AluJb SINE Alu 3 307 -5 601 231 28 55 chr9 96329832 96329881 -21532746 - MIR SINE MIR -139 123 74 525 270 32 85 chr9 96330319 96330470 -21532157 + MIR SINE MIR 15 149 -113 2401 61 0 0 chr9 96330470 96330775 -21531852 + AluY SINE Alu 1 305 0 525 270 32 85 chr9 96330775 96330870 -21531757 + MIR SINE MIR 149 248 -14 308 360 6 6 chr9 96332702 96332866 -21529761 - MIR SINE MIR -79 183 20 381 302 14 14 chr9 96333640 96333779 -21528848 - MIR SINE MIR -91 171 33 404 252 98 28 chr9 96334454 96334597 -21528030 - MIR SINE MIR -70 192 40 275 300 60 10 chr9 96334631 96334731 -21527896 + L2 LINE L2 3168 3272 0 215 259 0 9 chr9 96334736 96334844 -21527783 + (TGAA)n Simple_repeat Simple_repeat 4 110 0 242 330 17 8 chr9 96334875 96334993 -21527634 + (TGAA)n Simple_repeat Simple_repeat 2 120 0 213 361 8 0 chr9 96335479 96335612 -21527015 + MIR3 SINE MIR 75 208 0 248 270 40 14 chr9 96336115 96336189 -21526438 + MIR SINE MIR 121 196 -66 227 340 19 19 chr9 96336255 96336358 -21526269 + MIR3 SINE MIR 54 156 -52 284 248 88 22 chr9 96336358 96336495 -21526132 + MER117 DNA MER1_type 2 147 -50 333 331 31 16 chr9 96336704 96336831 -21525796 + MIR SINE MIR 19 147 -61 537 269 87 0 chr9 96336872 96337091 -21525536 + L1ME4a LINE L1 5657 5894 -227 241 294 15 0 chr9 96337318 96337386 -21525241 + MIR3 SINE MIR 137 205 -3 1626 170 57 20 chr9 96337745 96338045 -21524582 - AluJb SINE Alu -1 311 1 288 53 0 0 chr9 96338691 96338729 -21523898 + (A)n Simple_repeat Simple_repeat 1 38 0 2259 127 44 11 chr9 96338932 96339295 -21523332 - THE1C LTR MaLR 0 375 1 207 229 49 0 chr9 96339682 96339743 -21522884 - MIR SINE MIR -72 190 127 502 252 159 5 chr9 96340265 96340479 -21522148 + MIR SINE MIR 5 251 -11 2312 115 0 0 chr9 96340495 96340800 -21521827 - AluSx SINE Alu 0 312 8 359 338 14 14 chr9 96340848 96340993 -21521634 - MIR3 SINE MIR -31 177 33 262 253 10 40 chr9 96342010 96342109 -21520518 + CT-rich Low_complexity Low_complexity 4 99 0 239 321 132 19 chr9 96342596 96342808 -21519819 + MIR SINE MIR 20 255 -7 260 231 15 0 chr9 96342953 96343018 -21519609 + GA-rich Low_complexity Low_complexity 1 66 0 208 280 20 0 chr9 96343572 96343622 -21519005 - L2 LINE L2 -8 3264 3214 396 337 24 18 chr9 96343653 96343822 -21518805 + MLT1K LTR MaLR 2 171 -417 437 263 53 20 chr9 96343900 96344052 -21518575 + MLT1K LTR MaLR 432 588 0 339 338 26 7 chr9 96344052 96344203 -21518424 - MIR SINE MIR -89 173 20 858 308 141 5 chr9 96344281 96344722 -21517905 + L2 LINE L2 2813 3313 0 685 323 35 40 chr9 96344781 96345070 -21517557 - LTR16C LTR ERVL -4 487 199 2723 104 0 3 chr9 96345070 96345435 -21517192 - THE1B LTR MaLR 0 364 1 685 323 35 40 chr9 96345435 96345548 -21517079 - LTR16C LTR ERVL -292 199 87 194 376 17 0 chr9 96345775 96345892 -21516735 - L2 LINE L2 -13 3259 3141 342 302 43 29 chr9 96346515 96346654 -21515973 - MIR SINE MIR -110 152 12 193 171 0 49 chr9 96346679 96346720 -21515907 + MIR SINE MIR 110 148 -114 1643 180 0 55 chr9 96346724 96347035 -21515592 + AluJo SINE Alu 1 294 -18 403 329 62 44 chr9 96347409 96347749 -21514878 + L2 LINE L2 2967 3312 -1 438 275 98 52 chr9 96349058 96349251 -21513376 + MIR SINE MIR 47 248 -14 3808 12 0 0 chr9 96349634 96350057 -21512570 - L1PA3 LINE L1 -244 5911 5489 1975 38 0 0 chr9 96350057 96350291 -21512336 + L1PA3 LINE L1 5921 6155 0 213 175 0 0 chr9 96350567 96350607 -21512020 + (TG)n Simple_repeat Simple_repeat 1 40 0 * 294 162 0 0 chr9 96350606 96350680 -21511947 + GA-rich Low_complexity Low_complexity 1 74 0 188 100 25 0 chr9 96350709 96350749 -21511878 + (CA)n Simple_repeat Simple_repeat 2 42 0 * 212 130 22 0 chr9 96350748 96350794 -21511833 + GA-rich Low_complexity Low_complexity 2 48 0 335 261 33 39 chr9 96350867 96351047 -21511580 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 937 124 0 32 chr9 96351095 96351281 -21511346 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 824 162 23 6 chr9 96351286 96351631 -21510996 + GA-rich Low_complexity Low_complexity 1 351 0 238 146 18 18 chr9 96352061 96352116 -21510511 + (CATA)n Simple_repeat Simple_repeat 3 57 0 328 134 0 75 chr9 96352233 96352300 -21510327 - MIR SINE MIR -70 192 131 190 286 16 16 chr9 96352452 96352515 -21510112 - MIR3 SINE MIR -33 175 113 249 227 0 213 chr9 96352520 96352745 -21509882 - MER91B DNA MER1_type -7 183 7 1333 185 5 0 chr9 96353124 96353340 -21509287 + AluJb SINE Alu 85 301 -11 297 313 31 0 chr9 96353374 96353470 -21509157 - MIR SINE MIR -110 152 54 829 295 111 27 chr9 96354165 96354616 -21508011 + L2 LINE L2 2819 3307 -6 345 341 7 15 chr9 96354675 96354810 -21507817 - MIR3 SINE MIR -65 143 10 212 289 62 0 chr9 96355271 96355368 -21507259 + MIR SINE MIR 35 137 -71 396 328 39 28 chr9 96355466 96355681 -21506946 - MIR SINE MIR -25 237 21 357 240 70 0 chr9 96355721 96355821 -21506806 - MIR3 SINE MIR -20 188 82 203 270 54 14 chr9 96355992 96356066 -21506561 + L2 LINE L2 3196 3272 0 2277 100 3 10 chr9 96356302 96356612 -21506015 - AluSp SINE Alu -1 312 5 215 321 0 37 chr9 96356620 96356701 -21505926 + MIR SINE MIR 109 186 -76 240 59 0 0 chr9 96356895 96356929 -21505698 + (TG)n Simple_repeat Simple_repeat 2 35 0 247 264 72 76 chr9 96357035 96357215 -21505412 - MIR3 SINE MIR -69 139 6 42372 62 4 1 chr9 96357441 96363559 -21499068 - L1PA5 LINE L1 -7 6147 11 452 257 156 55 chr9 96363714 96364131 -21498496 + MLT1L LTR MaLR 151 609 -6 854 224 17 6 chr9 96364290 96364469 -21498158 - MER5A DNA MER1_type -8 181 1 22 0 0 0 chr9 96364496 96364518 -21498109 + AT_rich Low_complexity Low_complexity 1 22 0 1188 143 10 0 chr9 96364908 96365104 -21497523 + L1PB1 LINE L1 3 200 -6663 14717 191 29 9 chr9 96365106 96370235 -21492392 + L1PB1 LINE L1 636 6044 -823 198 0 0 0 chr9 96370235 96370257 -21492370 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 14717 191 29 9 chr9 96370257 96371096 -21491531 + L1PB1 LINE L1 6044 6865 -2 200 114 0 29 chr9 96371112 96371147 -21491480 + (GAA)n Simple_repeat Simple_repeat 3 36 0 235 281 127 40 chr9 96371178 96371304 -21491323 - MIR SINE MIR -65 143 16 353 340 65 0 chr9 96371900 96372053 -21490574 + MIR SINE MIR 85 247 -15 291 292 124 12 chr9 96372904 96373065 -21489562 + MIR SINE MIR 2 180 -82 2673 124 0 5 chr9 96373341 96373729 -21488898 + THE1-int LTR MaLR 19 404 -1176 288 239 42 0 chr9 96374676 96374747 -21487880 + MIR SINE MIR 117 190 -72 1853 160 0 33 chr9 96374755 96375061 -21487566 + AluSx SINE Alu 1 296 -16 4946 151 59 8 chr9 96375270 96376078 -21486549 + L1MA8 LINE L1 4790 5555 -736 1699 165 81 34 chr9 96376078 96376436 -21486191 + THE1C LTR MaLR 1 375 0 10041 130 34 40 chr9 96376438 96378025 -21484602 + THE1C-int LTR MaLR 3 1580 0 2085 133 67 25 chr9 96378025 96378385 -21484242 + THE1C LTR MaLR 1 375 0 4946 151 59 8 chr9 96378385 96378520 -21484107 + L1MA8 LINE L1 5555 5682 -609 513 0 0 0 chr9 96378520 96378577 -21484050 + (TA)n Simple_repeat Simple_repeat 2 58 0 4946 151 59 8 chr9 96378577 96379040 -21483587 + L1MA8 LINE L1 5682 6278 -13 395 274 77 39 chr9 96379193 96379401 -21483226 + L2 LINE L2 3098 3313 0 40201 60 4 0 chr9 96379798 96385630 -21476997 - L1PA5 LINE L1 -6 6148 297 598 82 0 0 chr9 96385630 96385703 -21476924 - L1PA5 LINE L1 -6063 83 11 396 330 78 11 chr9 96386311 96386502 -21476125 - MIR SINE MIR -50 212 9 493 238 6 11 chr9 96386620 96386801 -21475826 + GA-rich Low_complexity Low_complexity 1 180 0 304 296 35 35 chr9 96386811 96386926 -21475701 + MER5A DNA MER1_type 73 187 -2 1132 268 84 73 chr9 96387083 96387433 -21475194 + HsTC2a DNA Tc2 1 360 -1540 2040 143 44 19 chr9 96387433 96387796 -21474831 + L1MB8 LINE L1 5807 6178 0 1132 268 84 73 chr9 96387796 96387968 -21474659 + HsTC2a DNA Tc2 360 529 -215 582 138 32 0 chr9 96387984 96388078 -21474549 - Tigger7 DNA MER2_type 0 2487 2391 * 1314 185 122 0 chr9 96388077 96388315 -21474312 - Tigger7 DNA MER2_type -466 267 1 484 225 82 22 chr9 96388315 96388488 -21474139 + HsTC2a DNA Tc2 561 744 0 1474 170 8 4 chr9 96390258 96390505 -21472122 - L1MD1 LINE L1 -1 6241 5994 302 217 14 0 chr9 96390655 96390724 -21471903 - L1MD1 LINE L1 -525 5596 5527 1860 153 20 10 chr9 96391066 96391367 -21471260 + AluSx SINE Alu 1 304 -8 1383 165 4 40 chr9 96391630 96391879 -21470748 + AluJo SINE Alu 59 298 -14 204 260 39 13 chr9 96392517 96392594 -21470033 + MIR3 SINE MIR 128 206 -2 339 263 0 0 chr9 96394144 96394220 -21468407 - L2 LINE L2 -4 3268 3193 204 204 0 23 chr9 96394254 96394298 -21468329 + MIR SINE MIR 83 125 -83 501 265 29 29 chr9 96394742 96394912 -21467715 - MIR SINE MIR -73 189 20 309 304 55 39 chr9 96395173 96395362 -21467265 - MIR SINE MIR -54 154 3 398 289 21 15 chr9 96395719 96395872 -21466755 - MIR SINE MIR -64 144 36 468 319 36 48 chr9 96395880 96396131 -21466496 + MIR SINE MIR 1 248 -14 253 260 26 120 chr9 96396705 96396842 -21465785 + MIR3 SINE MIR 30 146 -62 535 262 11 75 chr9 96396842 96396889 -21465738 - MER5B DNA MER1_type 0 178 130 2192 116 0 3 chr9 96396889 96397199 -21465428 - AluSq SINE Alu -4 309 1 535 262 11 75 chr9 96397199 96397338 -21465289 - MER5B DNA MER1_type -48 130 4 253 260 26 120 chr9 96397338 96397392 -21465235 + MIR3 SINE MIR 146 203 -5 270 344 61 30 chr9 96397451 96397582 -21465045 - MIR3 SINE MIR -34 174 40 271 355 18 6 chr9 96397608 96397774 -21464853 + A-rich Low_complexity Low_complexity 2 169 0 226 33 0 0 chr9 96398315 96398345 -21464282 - MADE1 DNA Mariner -34 46 17 227 296 86 62 chr9 96399502 96399664 -21462963 + MER5A DNA MER1_type 2 167 -22 462 36 0 0 chr9 96400416 96400472 -21462155 + (CATATA)n Simple_repeat Simple_repeat 6 61 0 295 354 9 9 chr9 96401011 96401124 -21461503 - MIR3 SINE MIR -94 114 2 280 274 80 35 chr9 96402007 96402120 -21460507 + MIR SINE MIR 16 133 -75 315 104 0 0 chr9 96402380 96402428 -21460199 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 1425 199 40 73 chr9 96402939 96403361 -21459266 - MER113 DNA MER1_type? -113 408 1 504 313 7 14 chr9 96404437 96404581 -21458046 - L2 LINE L2 -9 3263 3121 594 152 111 0 chr9 96404781 96404880 -21457747 + FLAM_C SINE Alu 2 111 -32 22 0 0 0 chr9 96404893 96404915 -21457712 + AT_rich Low_complexity Low_complexity 1 22 0 2157 69 4 11 chr9 96405404 96405679 -21456948 + AluY SINE Alu 39 311 0 280 284 172 0 chr9 96405696 96405812 -21456815 + MIR SINE MIR 11 146 -116 199 336 140 19 chr9 96406465 96406572 -21456055 - L2 LINE L2 -5 3267 3148 345 353 33 19 chr9 96406694 96406891 -21455736 - MIR SINE MIR -20 242 43 332 266 141 8 chr9 96407217 96407345 -21455282 + MIR SINE MIR 112 256 -6 458 248 32 16 chr9 96407346 96407471 -21455156 - L2 LINE L2 -2 3311 3185 228 262 60 24 chr9 96407763 96407847 -21454780 - L2 LINE L2 -8 3264 3178 636 245 36 63 chr9 96407856 96408109 -21454518 + MER46C DNA MER2_type 80 325 -13 554 311 40 0 chr9 96408116 96408267 -21454360 - MIR SINE MIR -104 158 2 495 279 90 26 chr9 96408274 96408507 -21454120 - MIR SINE MIR -13 249 2 231 320 26 0 chr9 96408617 96408695 -21453932 + L2 LINE L2 2647 2726 -588 223 247 86 49 chr9 96408732 96408813 -21453814 - L2 LINE L2 -40 3232 3149 190 318 72 64 chr9 96408801 96409037 -21453590 + L2 LINE L2 2737 2974 -340 * 372 294 59 20 chr9 96409055 96409208 -21453419 + L2 LINE L2 3154 3312 -1 195 410 37 8 chr9 96409658 96409792 -21452835 + L2 LINE L2 3134 3271 -1 400 227 35 14 chr9 96410601 96410742 -21451885 - MER103 DNA DNA -5 161 18 2105 92 39 29 chr9 96410880 96411186 -21451441 + AluSx SINE Alu 1 309 -3 526 288 0 0 chr9 96411303 96411428 -21451199 - L2 LINE L2 -7 3306 3182 2490 87 0 0 chr9 96411519 96411830 -21450797 + AluY SINE Alu 1 311 0 794 208 104 163 chr9 96411897 96412358 -21450269 + L2 LINE L2 2880 3313 0 379 319 26 0 chr9 96412478 96412591 -21450036 - MIR SINE MIR -111 151 36 215 239 9 0 chr9 96413131 96413240 -21449387 + (TTCA)n Simple_repeat Simple_repeat 1 110 0 200 313 134 0 chr9 96413341 96413408 -21449219 + MIR3 SINE MIR 81 156 -52 399 21 0 0 chr9 96413636 96413684 -21448943 + (CA)n Simple_repeat Simple_repeat 1 48 0 324 0 0 0 chr9 96413777 96413813 -21448814 + (TC)n Simple_repeat Simple_repeat 1 36 0 387 56 0 0 chr9 96413814 96413868 -21448759 + (TA)n Simple_repeat Simple_repeat 2 55 0 484 155 0 0 chr9 96413868 96413939 -21448688 - AluSg/x SINE Alu -27 285 215 1204 161 0 62 chr9 96413984 96414208 -21448419 - AluJb SINE Alu -102 210 1 306 253 58 0 chr9 96414211 96414298 -21448329 + MER112 DNA MER1_type 157 248 -12 206 368 104 37 chr9 96414441 96414740 -21447887 + L2 LINE L2 2659 2977 -337 1563 230 86 71 chr9 96415302 96415975 -21446652 + MER45R DNA AcHobo 1 683 -898 1545 172 6 6 chr9 96415990 96416310 -21446317 - L1M2 LINE L1 -678 5613 5294 788 234 39 25 chr9 96417733 96418068 -21444559 + MER4C LTR ERV1 166 465 0 585 173 64 13 chr9 96418274 96418430 -21444197 - Charlie2a DNA MER1_type 0 2862 2699 468 220 39 11 chr9 96418421 96418603 -21444024 - Charlie2a DNA MER1_type -1203 1659 1473 * 336 239 9 28 chr9 96418667 96418776 -21443851 - Charlie2b DNA MER1_type -2110 672 566 535 280 138 13 chr9 96418819 96419051 -21443576 - Charlie2b DNA MER1_type -2593 269 9 282 203 89 38 chr9 96522227 96522306 -21340321 + MER109 Unknown Unknown 273 355 -2077 * 2659 155 76 0 chr9 96522275 96522764 -21339863 + MER109 Unknown Unknown 1598 2123 -309 1045 132 48 47 chr9 96522897 96523226 -21339401 - LTR35 LTR ERV1 -228 390 1 245 29 0 29 chr9 96523311 96523346 -21339281 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2047 75 0 26 chr9 96523382 96523647 -21338980 - AluSq SINE Alu -53 260 3 1820 194 34 40 chr9 96523650 96524123 -21338504 - L1MDa LINE L1 -4375 2165 1696 189 254 63 79 chr9 96549447 96549573 -21313054 - MIR SINE MIR -138 124 1 249 218 0 0 chr9 96549938 96549993 -21312634 - tRNA-Lys-AAA tRNA tRNA -14 62 8 272 220 0 0 chr9 96550112 96550171 -21312456 - tRNA-Cys-TGC tRNA tRNA -13 62 4 1941 143 12 58 chr9 96551770 96552233 -21310394 + L1M3 LINE L1 5169 5620 -548 * 10582 123 8 10 chr9 96552229 96553712 -21308915 + L1P LINE L1 15 1494 -4652 4663 152 28 13 chr9 96553684 96554511 -21308116 + L1MC1 LINE L1 5364 6202 -131 * 825 157 34 64 chr9 96567145 96567349 -21295278 + L1M4 LINE L1 3584 3781 -2365 319 172 54 32 chr9 96567356 96567449 -21295178 + L1MC1 LINE L1 6239 6333 0 1230 192 77 28 chr9 96567666 96567829 -21294798 - AluJb SINE Alu -10 302 118 405 39 0 0 chr9 96567829 96567880 -21294747 + (TTA)n Simple_repeat Simple_repeat 2 52 0 1230 192 77 28 chr9 96567880 96568002 -21294625 - AluJb SINE Alu -194 118 3 269 302 108 16 chr9 96697452 96697581 -21165046 + L2 LINE L2 3158 3298 -15 659 270 42 32 chr9 96697668 96698062 -21164565 + LTR16B LTR ERVL 40 464 0 222 220 0 0 chr9 96698066 96698116 -21164511 - MIR SINE MIR -62 146 97 843 246 9 14 chr9 96698140 96698351 -21164276 + MER63A DNA MER1_type 1 210 0 183 302 115 29 chr9 96698808 96698947 -21163680 - MIR SINE MIR -3 259 109 36 23 0 0 chr9 96699371 96699414 -21163213 + AT_rich Low_complexity Low_complexity 1 43 0 472 351 13 9 chr9 96700216 96700441 -21162186 + MIR SINE MIR 36 261 -1 206 262 180 0 chr9 96700485 96700546 -21162081 + MIR3 SINE MIR 115 186 -22 412 316 90 9 chr9 96701074 96701286 -21161341 + MIR SINE MIR 28 256 -6 2366 57 0 30 chr9 96701429 96701730 -21160897 - AluY SINE Alu -19 292 1 300 111 0 0 chr9 96704042 96704087 -21158540 + (CA)n Simple_repeat Simple_repeat 2 46 0 579 221 14 14 chr9 96704388 96704528 -21158099 + MER103 DNA DNA 8 147 -19 270 267 78 43 chr9 96704730 96704846 -21157781 - MIR SINE MIR -98 164 45 199 279 10 67 chr9 96705048 96705129 -21157498 - L2 LINE L2 -208 3064 2989 881 256 57 0 chr9 96705129 96705340 -21157287 - MER58A DNA MER1_type 0 224 2 199 279 10 67 chr9 96705340 96705362 -21157265 - L2 LINE L2 -283 2989 2967 24 32 0 0 chr9 96706252 96706283 -21156344 + AT_rich Low_complexity Low_complexity 1 31 0 462 295 62 16 chr9 96707254 96707459 -21155168 - MIR SINE MIR -21 241 30 752 270 54 0 chr9 96707993 96708197 -21154430 - MIR SINE MIR 0 262 48 1785 169 10 19 chr9 96708280 96708594 -21154033 + AluJb SINE Alu 1 311 -1 262 310 78 16 chr9 96708695 96708824 -21153803 - MIR SINE MIR -21 241 105 349 285 44 63 chr9 96709493 96709651 -21152976 - MIR SINE MIR -74 188 34 432 0 0 0 chr9 96709653 96709701 -21152926 + (TG)n Simple_repeat Simple_repeat 2 49 0 416 279 30 24 chr9 96710154 96710319 -21152308 - MIR SINE MIR -58 204 39 747 193 0 28 chr9 96710633 96710778 -21151849 + FLAM_A SINE Alu 1 141 -1 2342 80 11 0 chr9 96710867 96711153 -21151474 - AluSg SINE Alu -21 289 1 273 276 51 10 chr9 96712276 96712374 -21150253 + MIR SINE MIR 2 103 -159 208 230 69 103 chr9 96712660 96712747 -21149880 + MIR3 SINE MIR 113 196 -12 511 311 50 6 chr9 96713144 96713324 -21149303 + MIR3 SINE MIR 19 206 -2 324 282 34 72 chr9 96713419 96713431 -21149196 - MIR3 SINE MIR 0 262 251 188 219 0 0 chr9 96713431 96713463 -21149164 - L2 LINE L2 -19 3253 3222 324 282 34 72 chr9 96713463 96713616 -21149011 - MIR3 SINE MIR -11 251 2 485 277 36 0 chr9 96713950 96714062 -21148565 - L2 LINE L2 -2 3270 3155 282 348 54 9 chr9 96714428 96714540 -21148087 + L2 LINE L2 3139 3255 -17 224 341 22 0 chr9 96714628 96714719 -21147908 - MIR SINE MIR -68 140 48 1239 201 63 52 chr9 96715489 96715838 -21146789 + L1 LINE L1 3895 4247 -1899 249 241 19 0 chr9 96715896 96715950 -21146677 + MIR3 SINE MIR 135 189 -19 23 0 0 0 chr9 96716151 96716174 -21146453 + AT_rich Low_complexity Low_complexity 1 23 0 455 299 159 0 chr9 96716193 96716394 -21146233 + MIR SINE MIR 1 233 -29 5790 159 29 7 chr9 96716486 96717844 -21144783 + L1PA16 LINE L1 4775 6157 -9 399 41 0 0 chr9 96717846 96717895 -21144732 + (CA)n Simple_repeat Simple_repeat 1 49 0 2365 101 0 10 chr9 96718092 96718400 -21144227 + AluSx SINE Alu 1 305 -7 221 318 93 53 chr9 96718484 96718635 -21143992 + MIR SINE MIR 24 180 -82 415 330 64 15 chr9 96718650 96718853 -21143774 + MIR SINE MIR 4 216 -46 198 317 24 0 chr9 96719598 96719680 -21142947 + MIR SINE MIR 86 169 -93 222 203 47 62 chr9 96720276 96720340 -21142287 + L2 LINE L2 3210 3272 0 6939 193 142 18 chr9 96721054 96722524 -21140103 + MER52A LTR ERV1 1 1651 -104 1188 249 32 32 chr9 96722601 96722947 -21139680 + L1ME3A LINE L1 5825 6170 0 1120 161 0 0 chr9 96722996 96723170 -21139457 + MER2 DNA MER2_type 1 174 -171 2303 126 131 11 chr9 96723210 96723592 -21139035 - MSTA LTR MaLR 0 428 1 328 254 42 0 chr9 96723644 96723715 -21138912 + MER2 DNA MER2_type 271 344 -1 346 323 63 0 chr9 96723742 96723869 -21138758 - MIR3 SINE MIR -7 201 67 282 106 0 0 chr9 96725964 96726011 -21136616 + (CATA)n Simple_repeat Simple_repeat 2 48 0 272 328 92 15 chr9 96726044 96726175 -21136452 + MIR3 SINE MIR 6 146 -62 2179 97 4 0 chr9 96726356 96726658 -21135969 - AluSg SINE Alu 0 303 1 4607 163 21 8 chr9 96726844 96727477 -21135150 + L1MA10 LINE L1 5522 6170 -164 180 111 0 0 chr9 96727477 96727504 -21135123 + (CA)n Simple_repeat Simple_repeat 2 28 0 4607 163 21 8 chr9 96727504 96727668 -21134959 + L1MA10 LINE L1 6170 6330 -4 1910 110 59 10 chr9 96728333 96728623 -21134004 - AluSc SINE Alu -5 304 1 256 278 56 0 chr9 96728663 96728735 -21133892 + MIR SINE MIR 72 147 -61 426 273 29 7 chr9 96729389 96729510 -21133117 + MIR3 SINE MIR 67 193 -15 519 100 0 62 chr9 96729510 96729590 -21133037 - MADE1 DNA Mariner -2 78 4 426 273 29 7 chr9 96729590 96729607 -21133020 + MIR3 SINE MIR 193 208 0 378 246 85 17 chr9 96729606 96729724 -21132903 + MIR SINE MIR 77 202 -60 * 668 296 14 19 chr9 96730146 96730359 -21132268 - Charlie8 DNA MER1_type -2155 262 51 1971 164 0 3 chr9 96731074 96731385 -21131242 + AluJb SINE Alu 1 310 -2 234 323 53 43 chr9 96731473 96731677 -21130950 + MIR SINE MIR 1 207 -55 201 294 0 0 chr9 96731833 96731884 -21130743 + L2 LINE L2 2927 2977 -337 416 252 16 32 chr9 96731933 96732056 -21130571 - L2 LINE L2 -14 3299 3179 273 220 0 0 chr9 96732395 96732445 -21130182 - L2 LINE L2 -8 3305 3256 * 1669 342 134 19 chr9 96732444 96733680 -21128947 - L2 LINE L2 -591 2723 1192 1908 155 0 7 chr9 96733680 96733970 -21128657 + AluSx SINE Alu 1 288 -24 1669 342 134 19 chr9 96733970 96734624 -21128003 - L2 LINE L2 -2122 1192 615 330 314 110 0 chr9 96735130 96735248 -21127379 + L2 LINE L2 3142 3272 0 290 308 14 21 chr9 96736064 96736207 -21126420 + GA-rich Low_complexity Low_complexity 1 142 0 328 240 80 87 chr9 96736897 96737047 -21125580 + MIR3 SINE MIR 8 156 -52 186 143 0 0 chr9 96737428 96737463 -21125164 + (TG)n Simple_repeat Simple_repeat 1 35 0 21 0 0 0 chr9 96737716 96737737 -21124890 + AT_rich Low_complexity Low_complexity 1 21 0 276 347 77 18 chr9 96737800 96737970 -21124657 - MIR SINE MIR -75 187 8 4716 235 94 75 chr9 96738628 96738704 -21123923 + L1MEc LINE L1 36 109 -6106 486 0 0 0 chr9 96738704 96738758 -21123869 + (CA)n Simple_repeat Simple_repeat 2 55 0 1868 114 0 0 chr9 96738758 96739020 -21123607 + AluY SINE Alu 46 307 -4 4716 235 94 75 chr9 96739020 96740330 -21122297 + L1MEc LINE L1 109 1392 -4823 297 0 0 0 chr9 96740330 96740363 -21122264 + (TC)n Simple_repeat Simple_repeat 2 34 0 4716 235 94 75 chr9 96740363 96741356 -21121271 + L1MEc LINE L1 1392 2364 -3851 2066 135 7 0 chr9 96741356 96741653 -21120974 + AluSq SINE Alu 1 299 -14 4716 235 94 75 chr9 96741653 96743198 -21119429 + L1MEc LINE L1 2364 4037 -2178 24552 51 0 1 chr9 96743198 96746921 -21115706 + L1PA5 LINE L1 2431 6154 0 4716 235 94 75 chr9 96746921 96747208 -21115419 + L1MEc LINE L1 4037 4317 -1898 208 241 35 17 chr9 96747253 96747311 -21115316 + MIR3 SINE MIR 135 193 -15 324 316 19 39 chr9 96747475 96747630 -21114997 + MIR SINE MIR 10 146 -62 225 0 0 0 chr9 96747814 96747839 -21114788 + (CA)n Simple_repeat Simple_repeat 2 26 0 317 320 115 0 chr9 96748375 96748497 -21114130 - L2 LINE L2 0 3313 3178 303 211 115 19 chr9 96748592 96748696 -21113931 + MIR SINE MIR 119 232 -30 373 304 38 32 chr9 96749600 96749758 -21112869 + MIR SINE MIR 46 204 -58 480 331 31 2 chr9 96749991 96750187 -21112440 - MIR3 SINE MIR -5 203 1 306 263 168 53 chr9 96750271 96750480 -21112147 + L2 LINE L2 2827 3059 -213 1622 155 10 31 chr9 96750573 96750863 -21111764 - AluJo SINE Alu -28 284 1 217 279 12 58 chr9 96750997 96751083 -21111544 + L2 LINE L2 3184 3265 -7 784 271 29 33 chr9 96751732 96751942 -21110685 - MIR SINE MIR -52 210 2 208 352 46 36 chr9 96751942 96752138 -21110489 + L2 LINE L2 2696 2893 -421 1009 251 9 5 chr9 96752162 96752385 -21110242 - MER58A DNA MER1_type 0 224 1 429 70 0 0 chr9 96752442 96752499 -21110128 + (CA)n Simple_repeat Simple_repeat 2 58 0 231 341 135 48 chr9 96752505 96752757 -21109870 + L2 LINE L2 2951 3224 -48 488 314 58 11 chr9 96753442 96753691 -21108936 - MIR SINE MIR 0 262 5 332 184 82 102 chr9 96753714 96753812 -21108815 - MER53 DNA DNA 0 189 94 513 0 0 0 chr9 96754181 96754238 -21108389 + (TG)n Simple_repeat Simple_repeat 2 58 0 315 366 30 0 chr9 96754587 96754721 -21107906 - MIR3 SINE MIR -7 201 64 215 236 18 0 chr9 96754925 96754980 -21107647 + (TG)n Simple_repeat Simple_repeat 1 56 0 245 375 23 0 chr9 96755210 96755338 -21107289 + MIR3 SINE MIR 42 172 -36 248 274 12 36 chr9 96755913 96755997 -21106630 + L2 LINE L2 3186 3267 -5 2172 100 7 17 chr9 96756182 96756481 -21106146 + AluSg SINE Alu 1 296 -14 1824 146 0 81 chr9 96757017 96757339 -21105288 - AluSx SINE Alu -16 296 1 28 79 0 0 chr9 96757406 96757469 -21105158 + AT_rich Low_complexity Low_complexity 1 63 0 741 282 59 14 chr9 96758558 96758778 -21103849 - MIR SINE MIR -21 241 12 588 205 79 114 chr9 96758816 96759070 -21103557 - MIR SINE MIR 0 262 18 260 150 183 0 chr9 96759194 96759254 -21103373 - MER116 DNA Mariner -9 71 1 247 257 62 88 chr9 96759295 96759408 -21103219 + MIR SINE MIR 23 132 -76 2160 171 37 0 chr9 96759555 96759930 -21102697 + L1MC1 LINE L1 5940 6328 -5 2526 69 0 0 chr9 96760146 96760450 -21102177 - AluY SINE Alu -7 304 1 518 353 16 24 chr9 96761080 96761335 -21101292 - MIR SINE MIR 0 262 10 5957 145 17 35 chr9 96761648 96762867 -21099760 + L1MA4 LINE L1 5050 6289 -11 2118 105 0 0 chr9 96762867 96763144 -21099483 + AluSc SINE Alu 1 277 -32 1024 120 0 11 chr9 96763145 96763320 -21099307 + (GAAA)n Simple_repeat Simple_repeat 2 174 0 5957 145 17 35 chr9 96763320 96763377 -21099250 + L1MA4 LINE L1 6288 6300 0 548 143 155 0 chr9 96763380 96763464 -21099163 + FLAM_C SINE Alu 22 118 -25 617 340 95 40 chr9 96763580 96764001 -21098626 + L2 LINE L2 2826 3269 -3 560 281 115 21 chr9 96765036 96765271 -21097356 + MIR SINE MIR 4 260 -2 2820 10 0 0 chr9 96765342 96765650 -21096977 + AluY SINE Alu 1 308 -3 255 253 0 35 chr9 96765937 96766024 -21096603 + GA-rich Low_complexity Low_complexity 2 85 0 230 328 288 11 chr9 96766026 96766203 -21096424 - MIR SINE MIR -4 258 33 * 433 354 36 10 chr9 96766189 96766381 -21096246 - MIR SINE MIR -29 233 37 216 213 16 0 chr9 96766506 96766567 -21096060 + (TA)n Simple_repeat Simple_repeat 2 63 0 285 311 75 9 chr9 96767115 96767221 -21095406 + MIR SINE MIR 17 129 -133 2181 116 19 23 chr9 96767427 96767737 -21094890 + AluSx SINE Alu 2 310 -2 1072 177 40 134 chr9 96767830 96768203 -21094424 + MLT1A1 LTR MaLR 25 362 -3 376 195 55 62 chr9 96768228 96768356 -21094271 + L3 LINE CR1 1168 1294 -283 * 531 309 31 11 chr9 96768348 96768592 -21094035 - MIR SINE MIR -7 255 10 187 322 71 54 chr9 96768626 96768690 -21093937 + L3 LINE CR1 1316 1377 -200 1852 169 0 3 chr9 96768690 96768980 -21093647 + AluJb SINE Alu 1 289 -23 187 322 71 54 chr9 96768980 96769154 -21093473 + L3 LINE CR1 1377 1558 -19 1321 228 84 42 chr9 96769564 96770160 -21092467 + L1MC5 LINE L1 7294 7914 -47 337 316 64 47 chr9 96770746 96770917 -21091710 + MIR SINE MIR 50 223 -39 319 350 0 8 chr9 96770978 96771098 -21091529 - L2 LINE L2 -18 3295 3177 296 344 91 36 chr9 96771086 96771307 -21091320 + L3 LINE CR1 1342 1574 -3 * 22 0 0 0 chr9 96771330 96771352 -21091275 + AT_rich Low_complexity Low_complexity 1 22 0 835 334 75 35 chr9 96771507 96772053 -21090574 - L2 LINE L2 -261 3011 2447 792 265 22 20 chr9 96772347 96772604 -21090023 + MIR SINE MIR 6 262 0 221 274 96 0 chr9 96773096 96773169 -21089458 - MER5A DNA MER1_type -1 188 109 443 268 41 82 chr9 96773314 96773534 -21089093 + L2 LINE L2 3097 3307 -6 611 280 15 82 chr9 96773987 96774255 -21088372 + MIR SINE MIR 13 262 0 969 239 9 5 chr9 96774341 96774559 -21088068 - MER58A DNA MER1_type 0 224 6 615 235 12 6 chr9 96774569 96774729 -21087898 + MIR SINE MIR 77 235 -27 392 319 44 0 chr9 96774945 96775058 -21087569 + L2 LINE L2 3132 3249 -23 291 286 18 27 chr9 96775062 96775174 -21087453 + (ATGGTG)n Simple_repeat Simple_repeat 5 115 0 * 303 260 0 30 chr9 96775091 96775191 -21087436 + (TGG)n Simple_repeat Simple_repeat 2 98 0 211 310 17 0 chr9 96775504 96775562 -21087065 - MIR SINE MIR -60 148 90 263 309 85 21 chr9 96775573 96775667 -21086960 + MIR SINE MIR 53 152 -56 351 338 46 20 chr9 96775906 96776057 -21086570 - MIR3 SINE MIR -22 186 32 280 232 4 27 chr9 96776135 96776223 -21086404 - MIR SINE MIR -116 92 8 219 372 106 0 chr9 96777069 96777182 -21085445 - MIR SINE MIR -92 170 46 185 32 0 65 chr9 96777279 96777310 -21085317 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 677 325 44 74 chr9 96777833 96778393 -21084234 + L2 LINE L2 2718 3270 -2 330 277 22 66 chr9 96778805 96778843 -21083784 + L2 LINE L2 2561 2599 -715 1520 145 25 72 chr9 96778843 96779027 -21083600 - AluJo SINE Alu -9 303 139 2316 121 0 0 chr9 96779027 96779333 -21083294 - AluSg SINE Alu -4 306 1 1520 145 25 72 chr9 96779333 96779466 -21083161 - AluJo SINE Alu -173 139 1 330 277 22 66 chr9 96779466 96779564 -21083063 + L2 LINE L2 2599 2691 -623 2254 120 0 0 chr9 96779785 96780086 -21082541 + AluSx SINE Alu 1 301 -11 2382 80 7 3 chr9 96780324 96780623 -21082004 + AluSq SINE Alu 1 300 -13 228 243 66 40 chr9 96780636 96780788 -21081839 - L1ME LINE L1 -284 5882 5727 246 242 81 0 chr9 96781480 96781542 -21081085 + MIR SINE MIR 88 154 -108 376 127 14 14 chr9 96781545 96781616 -21081011 - MER116 DNA Mariner -6 74 4 725 228 33 33 chr9 96781679 96781890 -21080737 + MLT1J2 LTR MaLR 1 211 -239 2199 121 0 3 chr9 96781952 96782250 -21080377 - AluSx SINE Alu -15 297 1 189 0 0 0 chr9 96782306 96782327 -21080300 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 292 183 0 17 chr9 96782327 96782387 -21080240 + MLT1J2 LTR MaLR 377 435 -15 197 33 33 0 chr9 96782445 96782475 -21080152 + (ATG)n Simple_repeat Simple_repeat 3 33 0 1834 135 0 8 chr9 96783100 96783403 -21079224 + AluSx SINE Alu 26 326 0 305 224 79 0 chr9 96784493 96784569 -21078058 - MER91C DNA MER1_type -35 105 24 1070 182 57 5 chr9 96785192 96785401 -21077226 + MER58A DNA MER1_type 5 224 0 195 219 0 0 chr9 96785408 96785448 -21077179 - MIR SINE MIR -118 144 106 371 226 12 12 chr9 96785623 96785707 -21076920 - MIR3 SINE MIR -48 160 77 532 331 112 64 chr9 96786338 96786730 -21075897 + L2 LINE L2 2682 3102 -170 1614 181 3 48 chr9 96786730 96786907 -21075720 - AluJb SINE Alu -17 295 136 207 0 0 0 chr9 96786907 96786930 -21075697 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1614 181 3 48 chr9 96786930 96787061 -21075566 - AluJb SINE Alu -176 136 1 532 331 112 64 chr9 96787061 96787225 -21075402 + L2 LINE L2 3102 3257 -15 189 0 0 0 chr9 96787716 96787737 -21074890 + (A)n Simple_repeat Simple_repeat 1 21 0 311 191 292 0 chr9 96788298 96788387 -21074240 + MIR SINE MIR 148 262 0 1955 172 0 0 chr9 96788592 96788900 -21073727 + AluSx SINE Alu 1 308 -4 1283 126 17 0 chr9 96788922 96789096 -21073531 - AluSg/x SINE Alu -13 299 123 221 0 0 33 chr9 96789123 96789153 -21073474 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 225 0 0 0 chr9 96789767 96789792 -21072835 + (T)n Simple_repeat Simple_repeat 1 25 0 28 48 0 0 chr9 96790211 96790253 -21072374 + AT_rich Low_complexity Low_complexity 1 42 0 242 343 7 84 chr9 96790253 96790396 -21072231 + L2 LINE L2 3141 3272 0 312 226 39 69 chr9 96790524 96790626 -21072001 - MIR SINE MIR -92 116 18 367 321 92 38 chr9 96790753 96790937 -21071690 - L3 LINE CR1 -9 1568 1375 324 0 0 0 chr9 96791202 96791238 -21071389 + (CA)n Simple_repeat Simple_repeat 1 36 0 593 233 20 7 chr9 96791413 96791559 -21071068 + MIR SINE MIR 45 192 -70 319 219 16 0 chr9 96791826 96791890 -21070737 + MIR SINE MIR 88 152 -110 372 272 52 22 chr9 96791923 96792059 -21070568 - MIR SINE MIR -38 224 85 1902 54 0 0 chr9 96792820 96793059 -21069568 + L1PA5 LINE L1 5916 6154 0 356 340 68 7 chr9 96793072 96793219 -21069408 + MER91A DNA MER1_type 41 196 0 228 292 149 26 chr9 96793221 96793324 -21069303 + MIR SINE MIR 84 214 -48 2277 117 0 0 chr9 96793324 96793622 -21069005 + AluSq SINE Alu 1 298 -15 228 292 149 26 chr9 96793622 96793672 -21068955 + MIR SINE MIR 214 256 -6 186 103 0 0 chr9 96793673 96793702 -21068925 + (TTA)n Simple_repeat Simple_repeat 2 30 0 193 250 147 0 chr9 96794834 96794902 -21067725 - MIR SINE MIR -77 185 108 424 216 47 14 chr9 96795122 96795270 -21067357 + L1MC4 LINE L1 5749 5901 -1907 731 183 7 15 chr9 96795276 96795413 -21067214 - FLAM_C SINE Alu -7 136 1 275 71 24 0 chr9 96795449 96795491 -21067136 + (TA)n Simple_repeat Simple_repeat 1 43 0 2271 160 62 12 chr9 96795886 96796292 -21066335 + MSTB LTR MaLR 1 426 0 1136 237 64 124 chr9 96796490 96797178 -21065449 + L1MC4 LINE L1 6611 7255 -733 1303 231 78 9 chr9 96797331 96797781 -21064846 + Charlie4a DNA MER1_type 27 507 -1 635 268 91 55 chr9 96797786 96797980 -21064647 + L1MC5 LINE L1 7370 7556 -405 2349 120 0 0 chr9 96797980 96798289 -21064338 - AluSx SINE Alu -3 309 1 635 268 91 55 chr9 96798289 96798620 -21064007 + L1MC5 LINE L1 7556 7914 -47 3722 146 16 35 chr9 96798770 96799229 -21063398 - L1MC1 LINE L1 0 6333 5892 2228 98 10 3 chr9 96799229 96799525 -21063102 - AluSx SINE Alu -14 298 1 3722 146 16 35 chr9 96799525 96799813 -21062814 - L1MC1 LINE L1 -441 5892 5600 588 180 0 9 chr9 96799913 96800024 -21062603 + MER66B LTR ERV1 2 111 -375 2022 171 48 8 chr9 96800036 96800415 -21062212 + MER66B LTR ERV1 1 394 -92 207 0 0 0 chr9 96800416 96800439 -21062188 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1230 147 257 14 chr9 96800441 96800837 -21061790 - L1MC1 LINE L1 -724 5609 5119 2334 98 3 0 chr9 96800843 96801138 -21061489 - AluSx SINE Alu -16 296 1 304 190 7 14 chr9 96801195 96801269 -21061358 + MLT1J2 LTR MaLR 354 435 -15 197 33 33 0 chr9 96801327 96801357 -21061270 + (ATG)n Simple_repeat Simple_repeat 3 33 0 316 119 15 45 chr9 96801440 96801507 -21061120 - Alu SINE Alu -253 49 1 22 0 0 0 chr9 96802340 96802362 -21060265 + AT_rich Low_complexity Low_complexity 1 22 0 190 289 22 0 chr9 96802367 96802412 -21060215 - L2 LINE L2 -14 3299 3254 1453 254 121 21 chr9 96802559 96803087 -21059540 + MLT1E LTR MaLR 13 593 0 22 35 0 0 chr9 96803092 96803121 -21059506 + AT_rich Low_complexity Low_complexity 1 29 0 1918 150 28 0 chr9 96803126 96803413 -21059214 + AluJb SINE Alu 2 296 -16 204 125 0 0 chr9 96803556 96803588 -21059039 + (TAA)n Simple_repeat Simple_repeat 2 33 0 562 274 59 11 chr9 96803594 96803780 -21058847 - MIR SINE MIR -2 260 66 299 250 59 37 chr9 96803929 96803999 -21058628 - MIR SINE MIR 0 262 195 2285 95 86 6 chr9 96803999 96804348 -21058279 + MER51B LTR ERV1 1 377 0 299 250 59 37 chr9 96804348 96804413 -21058214 - MIR SINE MIR -67 195 124 1591 234 83 9 chr9 96804469 96804901 -21057726 + MLT1C LTR MaLR 1 464 -3 2963 53 5 0 chr9 96804901 96805279 -21057348 + LTR8 LTR ERV1 2 381 -310 1861 211 68 14 chr9 96805281 96805764 -21056863 - LTR22 LTR ERVK 0 509 1 * 2236 71 10 3 chr9 96805764 96806074 -21056553 + LTR8 LTR ERV1 380 691 0 37551 70 14 23 chr9 96806074 96810618 -21052009 + HUERS-P1 LTR ERV1 1 4582 -1681 22259 31 0 0 chr9 96810618 96814070 -21048557 + L1PA3 LINE L1 2696 6152 -3 1555 49 0 0 chr9 96813889 96814073 -21048554 + L1PA3 LINE L1 5972 6155 0 * 30 0 0 0 chr9 96814073 96814103 -21048524 + AT_rich Low_complexity Low_complexity 1 30 0 37551 70 14 23 chr9 96814103 96815843 -21046784 + HUERS-P1 LTR ERV1 4584 6262 -1 5373 78 7 3 chr9 96815844 96816532 -21046095 + LTR8 LTR ERV1 1 691 0 203 224 20 0 chr9 96816895 96816944 -21045683 + (TA)n Simple_repeat Simple_repeat 1 50 0 255 266 165 32 chr9 96817203 96817421 -21045206 + MIR SINE MIR 16 262 0 256 246 87 36 chr9 96818057 96818195 -21044432 + MIR3 SINE MIR 31 175 -33 855 205 21 86 chr9 96819970 96820204 -21042423 + MER20 DNA MER1_type 1 219 0 187 282 0 0 chr9 96820206 96820245 -21042382 + MIR SINE MIR 33 71 -191 694 259 52 10 chr9 96820246 96820439 -21042188 + MIR SINE MIR 44 244 -18 384 255 72 31 chr9 96820459 96820642 -21041985 - MIR SINE MIR -62 200 16 297 260 285 1 chr9 96821250 96821429 -21041198 - MIR SINE MIR -3 259 34 428 269 136 19 chr9 96821709 96821915 -21040712 + MIR SINE MIR 31 261 -1 1271 184 0 0 chr9 96821961 96822167 -21040460 - AluJb SINE Alu -20 292 87 338 274 0 21 chr9 96823027 96823122 -21039505 + L2 LINE L2 3168 3260 -12 550 261 54 50 chr9 96823437 96823698 -21038929 - MIR SINE MIR 0 262 1 400 244 0 0 chr9 96823812 96823890 -21038737 - AluJb SINE Alu -29 273 196 194 355 50 16 chr9 96824262 96824383 -21038244 - MIR SINE MIR -118 144 20 2479 60 3 35 chr9 96825487 96825804 -21036823 - AluY SINE Alu -4 307 1 580 256 58 17 chr9 96826207 96826379 -21036248 + MIR SINE MIR 63 241 -21 216 320 67 27 chr9 96827320 96827470 -21035157 - MIR SINE MIR -6 256 101 457 299 15 46 chr9 96828283 96828480 -21034147 - MIR SINE MIR -7 255 65 267 277 252 0 chr9 96833158 96833317 -21029310 + MIR SINE MIR 64 262 0 3326 15 0 0 chr9 96834039 96834461 -21028166 - L1P1 LINE L1 -528 5627 5206 2812 19 0 0 chr9 96834461 96834773 -21027854 + L1PA2 LINE L1 5837 6155 0 537 258 58 37 chr9 96835083 96835273 -21027354 + MIR3 SINE MIR 1 194 -14 220 247 53 107 chr9 96835419 96835569 -21027058 + MIR SINE MIR 65 206 -56 21 57 0 0 chr9 96836062 96836097 -21026530 + AT_rich Low_complexity Low_complexity 1 35 0 293 271 76 8 chr9 96836120 96836238 -21026389 + MIR SINE MIR 13 138 -124 1261 228 111 5 chr9 96837330 96837699 -21024928 + LTR52 LTR ERVL 11 418 -3 6512 221 93 51 chr9 96837706 96839692 -21022935 + LTR52-int LTR ERVL 8 2075 -1481 5159 206 62 25 chr9 96839789 96841009 -21021618 + LTR52-int LTR ERVL 2251 3556 0 1792 190 34 36 chr9 96841010 96841425 -21021202 + LTR52 LTR ERVL 2 415 -6 2291 93 3 13 chr9 96841481 96841794 -21020833 + AluSp SINE Alu 1 310 -3 329 365 57 58 chr9 96842476 96843183 -21019444 + L2 LINE L2 2178 2883 -431 375 249 143 42 chr9 96843342 96843531 -21019096 + L2 LINE L2 3101 3308 -5 229 128 0 0 chr9 96843835 96843874 -21018753 + L1MB8 LINE L1 6135 6173 -5 265 222 0 28 chr9 96843984 96844056 -21018571 + MIR SINE MIR 28 97 -165 272 314 112 30 chr9 96844742 96844911 -21017716 + MIR SINE MIR 68 250 -12 448 250 214 15 chr9 96844917 96845113 -21017514 + MIR SINE MIR 28 262 0 499 301 26 10 chr9 96845492 96845685 -21016942 - MIR SINE MIR -1 261 66 2924 3 0 3 chr9 96845831 96846143 -21016484 + AluYa5 SINE Alu 1 311 0 344 286 51 31 chr9 96846423 96846619 -21016008 + L2 LINE L2 2889 3088 -184 404 291 60 8 chr9 96847564 96847698 -21014929 - MER117 DNA MER1_type -1 196 56 522 255 36 47 chr9 96848023 96848215 -21014412 + MIR SINE MIR 23 212 -50 437 315 67 73 chr9 96848961 96849508 -21013119 - L2 LINE L2 0 3272 2693 1735 222 52 48 chr9 96849509 96849986 -21012641 + MLT2B1 LTR ERVL 1 479 -41 203 184 0 0 chr9 96849987 96850025 -21012602 + (TA)n Simple_repeat Simple_repeat 2 39 0 305 132 0 88 chr9 96850031 96850099 -21012528 + MLT2C2 LTR ERVL 403 464 0 431 320 31 0 chr9 96850108 96850302 -21012325 - L2 LINE L2 -627 2687 2488 458 311 103 9 chr9 96850639 96850960 -21011667 - L2 LINE L2 -1045 2269 1919 308 248 8 0 chr9 96851549 96851666 -21010961 + CT-rich Low_complexity Low_complexity 1 118 0 204 286 0 0 chr9 96852019 96852068 -21010559 + (CA)n Simple_repeat Simple_repeat 1 49 0 360 306 25 16 chr9 96852209 96852330 -21010297 - MIR SINE MIR -120 142 21 243 208 0 38 chr9 96853027 96853080 -21009547 - MER117 DNA MER1_type -124 73 23 2325 96 0 0 chr9 96853917 96854210 -21008417 + AluY SINE Alu 1 293 -18 304 289 58 8 chr9 96854300 96854421 -21008206 - MIR SINE MIR -24 238 112 252 304 76 54 chr9 96855542 96855726 -21006901 + MIR3 SINE MIR 17 204 -4 486 261 12 24 chr9 96855881 96856046 -21006581 + MIR SINE MIR 2 164 -98 423 286 41 20 chr9 96856580 96856727 -21005900 - MIR3 SINE MIR -11 197 48 202 222 67 0 chr9 96857752 96857797 -21004830 + L2 LINE L2 3205 3252 -20 378 0 0 0 chr9 96858048 96858090 -21004537 + (CA)n Simple_repeat Simple_repeat 2 43 0 580 186 77 55 chr9 96858745 96858928 -21003699 + MIR SINE MIR 33 219 -43 191 231 0 0 chr9 96859430 96859482 -21003145 - L2 LINE L2 -310 2962 2911 188 316 73 28 chr9 96859728 96859975 -21002652 + L2 LINE L2 2994 3251 -21 212 274 21 32 chr9 96860428 96860523 -21002104 + MIR SINE MIR 102 195 -67 538 230 103 0 chr9 96860590 96860716 -21001911 + MER58B DNA MER1_type 202 340 -1 275 254 59 25 chr9 96860988 96861106 -21001521 + L1ME4a LINE L1 5964 6085 -36 288 252 45 36 chr9 96861941 96862052 -21000575 + L2 LINE L2 3183 3294 -19 432 0 0 0 chr9 96862213 96862261 -21000366 + (TAA)n Simple_repeat Simple_repeat 1 48 0 198 272 59 59 chr9 96862363 96862433 -21000194 - MIR SINE MIR -44 218 146 2171 111 0 10 chr9 96862433 96862756 -20999871 - AluSq SINE Alu 0 313 3 198 272 59 59 chr9 96862756 96862821 -20999806 - MIR SINE MIR -115 147 83 592 271 39 7 chr9 96862890 96863045 -20999582 + L3 LINE CR1 1416 1575 -2 200 371 10 10 chr9 96863169 96863266 -20999361 + MIR SINE MIR 5 101 -161 342 276 92 15 chr9 96863805 96863960 -20998667 + MIR3 SINE MIR 3 169 -65 385 308 83 13 chr9 96864726 96864882 -20997745 + MIR SINE MIR 26 192 -70 502 231 83 47 chr9 96865083 96865252 -20997375 - MIR3 SINE MIR -19 189 15 425 273 128 73 chr9 96865282 96865571 -20997056 + L3 LINE CR1 1261 1565 -12 232 180 20 20 chr9 96865602 96865652 -20996975 + GA-rich Low_complexity Low_complexity 2 51 0 258 262 0 0 chr9 96865918 96865979 -20996648 + (CAT)n Simple_repeat Simple_repeat 1 61 0 372 296 210 0 chr9 96865985 96866161 -20996466 - MIR SINE MIR -13 249 37 238 270 87 71 chr9 96866528 96866654 -20995973 - L2 LINE L2 -6 3266 3139 241 333 91 0 chr9 96866834 96866933 -20995694 + MIR SINE MIR 48 155 -107 503 278 167 0 chr9 96866963 96867161 -20995466 - MIR SINE MIR 0 262 32 360 43 0 0 chr9 96868486 96868532 -20994095 + (TG)n Simple_repeat Simple_repeat 2 47 0 342 0 0 0 chr9 96868646 96868684 -20993943 + (TG)n Simple_repeat Simple_repeat 2 39 0 1421 126 18 98 chr9 96868802 96868946 -20993681 + L1PB2 LINE L1 5887 6041 -110 2810 3 0 0 chr9 96868946 96869241 -20993386 + AluY SINE Alu 1 295 -16 1421 126 18 98 chr9 96869241 96869254 -20993373 + L1PB2 LINE L1 6041 6053 -98 1905 117 99 0 chr9 96869254 96869527 -20993100 + AluSx SINE Alu 1 300 -12 1421 126 18 98 chr9 96869527 96869654 -20992973 + L1PB2 LINE L1 6053 6149 -2 538 196 20 68 chr9 96869675 96869823 -20992804 - MIR SINE MIR -72 190 50 246 32 0 0 chr9 96870047 96870078 -20992549 + (CA)n Simple_repeat Simple_repeat 2 32 0 344 278 19 9 chr9 96870200 96870308 -20992319 - L2 LINE L2 -2 3311 3203 286 330 31 0 chr9 96870711 96870808 -20991819 + L2 LINE L2 3127 3226 -46 275 231 0 26 chr9 96871421 96871499 -20991128 + MIR SINE MIR 77 152 -110 2404 78 0 7 chr9 96871541 96871848 -20990779 - AluY SINE Alu -5 306 2 283 244 35 23 chr9 96872602 96872688 -20989939 + MIR SINE MIR 38 124 -84 315 113 0 0 chr9 96872946 96872999 -20989628 + (TTCA)n Simple_repeat Simple_repeat 1 53 0 194 375 91 0 chr9 96873018 96873106 -20989521 - L2 LINE L2 -52 3220 3125 289 67 0 22 chr9 96873780 96873825 -20988802 + L1MA5 LINE L1 6257 6300 0 1915 92 0 27 chr9 96874304 96874564 -20988063 + AluY SINE Alu 1 253 -58 1442 126 42 0 chr9 96874684 96874898 -20987729 - AluSx SINE Alu -88 224 2 226 262 64 52 chr9 96875083 96875255 -20987372 - L2 LINE L2 -174 3098 2925 561 321 51 26 chr9 96875309 96875620 -20987007 - L2 LINE L2 -400 2914 2596 289 359 8 0 chr9 96876771 96876888 -20985739 + L2 LINE L2 2587 2704 -610 1542 196 50 72 chr9 96876919 96877180 -20985447 - MLT1D LTR MaLR 0 505 259 2283 113 0 3 chr9 96877180 96877482 -20985145 - AluSg SINE Alu -9 301 1 1542 196 50 72 chr9 96877482 96877736 -20984891 - MLT1D LTR MaLR -246 259 1 543 253 23 99 chr9 96877812 96878033 -20984594 + L2 LINE L2 3065 3268 -4 483 281 27 7 chr9 96878208 96878354 -20984273 - MIR SINE MIR -6 256 108 335 281 123 7 chr9 96878526 96878672 -20983955 - MIR SINE MIR -14 248 86 333 0 0 0 chr9 96878790 96878827 -20983800 + (CA)n Simple_repeat Simple_repeat 1 37 0 386 230 23 0 chr9 96879855 96879942 -20982685 + MIR SINE MIR 30 118 -90 580 304 17 22 chr9 96880090 96880320 -20982307 + MIR SINE MIR 31 259 -3 2452 153 36 5 chr9 96880731 96881144 -20981483 + MSTB LTR MaLR 1 426 0 230 81 27 0 chr9 96881640 96881677 -20980950 + (TC)n Simple_repeat Simple_repeat 2 39 0 392 314 7 14 chr9 96882189 96882329 -20980298 + MIR SINE MIR 68 206 -56 312 267 99 50 chr9 96882471 96882632 -20979995 + MIR SINE MIR 84 252 -10 240 35 0 0 chr9 96882635 96882664 -20979963 + (TTA)n Simple_repeat Simple_repeat 1 29 0 5370 192 39 28 chr9 96882700 96884786 -20977841 + L1MC2 LINE L1 4233 6336 -8 5383 66 1 30 chr9 96884886 96885612 -20977015 - L1PA7 LINE L1 0 6154 5450 885 229 17 0 chr9 96885615 96885794 -20976833 + MER58A DNA MER1_type 43 224 0 21 0 0 0 chr9 96885849 96885870 -20976757 + AT_rich Low_complexity Low_complexity 1 21 0 1320 220 96 94 chr9 96886262 96886331 -20976296 + MLT1D LTR MaLR 3 70 -435 2005 151 2 90 chr9 96886331 96886755 -20975872 + MLT1B LTR MaLR 1 387 -3 1320 220 96 94 chr9 96886755 96887184 -20975443 + MLT1D LTR MaLR 70 502 -3 287 250 39 19 chr9 96887402 96887506 -20975121 + MIR SINE MIR 86 191 -71 339 25 0 0 chr9 96887867 96887907 -20974720 + (CA)n Simple_repeat Simple_repeat 2 41 0 272 255 0 85 chr9 96887922 96888016 -20974611 - MIR3 SINE MIR -54 154 69 231 222 0 0 chr9 96888823 96888877 -20973750 + L2 LINE L2 3199 3252 -20 207 0 0 0 chr9 96889067 96889090 -20973537 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 202 250 0 54 chr9 96889112 96889168 -20973459 - MIR3 SINE MIR -16 192 140 * 513 213 60 27 chr9 96889160 96889310 -20973317 + MIR SINE MIR 108 262 0 463 229 236 13 chr9 96889640 96889797 -20972830 + MER91A DNA MER1_type 5 196 0 303 283 66 28 chr9 96889867 96889973 -20972654 + L2 LINE L2 3202 3311 -2 1379 200 59 10 chr9 96889986 96890276 -20972351 - AluJo SINE Alu -8 304 1 694 289 75 34 chr9 96890653 96891002 -20971625 + L2 LINE L2 2949 3311 -2 217 328 26 35 chr9 96892278 96892394 -20970233 - L2 LINE L2 0 3272 3158 541 297 35 71 chr9 96892512 96892995 -20969632 - L2 LINE L2 -180 3092 2618 339 225 45 0 chr9 96893354 96893443 -20969184 + MIR SINE MIR 59 151 -111 412 292 36 30 chr9 96893561 96893601 -20969026 - MIR SINE MIR -13 249 211 1152 202 19 95 chr9 96893601 96893968 -20968659 + MER58B DNA MER1_type 2 340 -1 412 292 36 30 chr9 96893968 96894095 -20968532 - MIR SINE MIR -51 211 81 324 351 27 9 chr9 96894225 96894336 -20968291 + L2 LINE L2 3138 3250 -22 341 301 81 17 chr9 96894683 96894856 -20967771 + MIR3 SINE MIR 15 155 -53 318 292 80 9 chr9 96895129 96895242 -20967385 - MIR SINE MIR -77 185 65 983 317 82 2 chr9 96895247 96895648 -20966979 + LTR16A LTR ERVL 16 448 -2 23 0 0 0 chr9 96895952 96895975 -20966652 + AT_rich Low_complexity Low_complexity 1 23 0 850 301 81 16 chr9 96896510 96896952 -20965675 + L1ME4a LINE L1 5541 6011 -110 241 290 145 0 chr9 96897054 96897199 -20965428 + MIR SINE MIR 80 245 -17 430 245 6 10 chr9 96897331 96897644 -20964983 + (CA)n Simple_repeat Simple_repeat 1 311 0 543 289 0 6 chr9 96897738 96897911 -20964716 + (CA)n Simple_repeat Simple_repeat 1 172 0 290 251 0 6 chr9 96897958 96898133 -20964494 + (CA)n Simple_repeat Simple_repeat 1 174 0 236 255 21 21 chr9 96898135 96898229 -20964398 + (CATA)n Simple_repeat Simple_repeat 1 94 0 183 80 0 0 chr9 96898244 96898269 -20964358 + (CA)n Simple_repeat Simple_repeat 2 26 0 216 283 25 69 chr9 96899058 96899217 -20963410 - L2 LINE L2 -13 3300 3149 345 300 116 48 chr9 96899235 96899636 -20962991 + L2 LINE L2 1752 2189 -1125 1773 190 64 3 chr9 96899636 96899978 -20962649 + MLT1A1 LTR MaLR 1 363 -2 345 300 116 48 chr9 96899978 96900033 -20962594 + L2 LINE L2 2189 2239 -1075 261 323 139 26 chr9 96900239 96900706 -20961921 - L2 LINE L2 -1231 2083 1564 1197 201 91 15 chr9 96900860 96901123 -20961504 + AluJo SINE Alu 2 284 -18 187 366 23 8 chr9 96901656 96901787 -20960840 - L3 LINE CR1 -291 1286 1154 261 308 87 10 chr9 96902141 96902245 -20960382 + L2 LINE L2 2939 3050 -222 342 316 26 0 chr9 96902393 96902510 -20960117 + MIR SINE MIR 99 218 -44 261 373 39 0 chr9 96902568 96902670 -20959957 + L2 LINE L2 3141 3246 -26 234 0 0 0 chr9 96902670 96902696 -20959931 + (TGAA)n Simple_repeat Simple_repeat 4 29 0 21 36 0 0 chr9 96903128 96903156 -20959471 + AT_rich Low_complexity Low_complexity 1 28 0 2800 88 0 3 chr9 96903258 96903622 -20959005 + THE1B LTR MaLR 1 363 -1 465 278 29 23 chr9 96904742 96904915 -20957712 - MIR SINE MIR -58 204 31 237 295 105 9 chr9 96905323 96905428 -20957199 - MIR SINE MIR -63 145 31 440 266 157 13 chr9 96905546 96905775 -20956852 - MIR SINE MIR 0 262 1 227 256 26 0 chr9 96906489 96906567 -20956060 + GA-rich Low_complexity Low_complexity 3 82 0 595 145 47 17 chr9 96906578 96906750 -20955877 + GA-rich Low_complexity Low_complexity 2 178 0 884 121 23 12 chr9 96906768 96906941 -20955686 + GA-rich Low_complexity Low_complexity 4 178 0 321 311 11 0 chr9 96907070 96907160 -20955467 + MER91A DNA MER1_type 1 91 -105 313 275 54 48 chr9 96907438 96907605 -20955022 - MIR SINE MIR -75 187 20 299 380 53 22 chr9 96907869 96908095 -20954532 + L3 LINE CR1 207 439 -1138 249 305 78 23 chr9 96908469 96908597 -20954030 - MIR3 SINE MIR -59 149 15 689 181 14 139 chr9 96908601 96908816 -20953811 - MER5A DNA MER1_type 0 189 2 1955 113 25 14 chr9 96908934 96909217 -20953410 - AluSg SINE Alu 0 310 25 239 231 19 0 chr9 96909224 96909276 -20953351 - MER5A DNA MER1_type -108 81 29 24 32 0 0 chr9 96909488 96909519 -20953108 + AT_rich Low_complexity Low_complexity 1 31 0 1065 186 51 140 chr9 96910231 96910624 -20952003 + MLT1A1 LTR MaLR 1 358 -7 247 317 42 6 chr9 96910980 96911147 -20951480 + (TTCA)n Simple_repeat Simple_repeat 2 174 0 208 328 86 43 chr9 96911147 96911333 -20951294 - L2 LINE L2 0 3272 3079 203 319 72 30 chr9 96911539 96911705 -20950922 - L2 LINE L2 -1413 1901 1729 222 37 0 0 chr9 96911905 96911932 -20950695 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 2406 75 14 0 chr9 96911937 96912232 -20950395 - AluSp SINE Alu -14 299 1 358 313 0 9 chr9 96913004 96913116 -20949511 - MIR SINE MIR -132 130 20 275 227 117 78 chr9 96914069 96914197 -20948430 + MER94 DNA DNA 1 133 -1 525 165 0 0 chr9 96914361 96914458 -20948169 + CT-rich Low_complexity Low_complexity 2 98 0 453 253 83 39 chr9 96914581 96914815 -20947812 - MIR SINE MIR -3 259 8 25 51 0 0 chr9 96915072 96915111 -20947516 + AT_rich Low_complexity Low_complexity 1 39 0 238 309 112 22 chr9 96915153 96915306 -20947321 - MIR3 SINE MIR -67 141 6 221 403 14 0 chr9 96915374 96915470 -20947157 + MIR SINE MIR 109 249 -13 196 233 23 0 chr9 96915470 96915513 -20947114 + L2 LINE L2 3210 3253 -19 2288 99 3 0 chr9 96915754 96916047 -20946580 + AluSp SINE Alu 11 304 -9 468 273 36 57 chr9 96916072 96916266 -20946361 + MIR SINE MIR 22 211 -51 1233 244 99 118 chr9 96916267 96917564 -20945063 + L2 LINE L2 2038 3312 -1 213 279 0 16 chr9 96917605 96917666 -20944961 + (CTA)n Simple_repeat Simple_repeat 3 62 0 2021 128 40 100 chr9 96917836 96918235 -20944392 + THE1C LTR MaLR 1 375 0 1630 145 19 32 chr9 96918245 96918298 -20944329 + L1MC3 LINE L1 7479 7531 -254 2207 149 45 131 chr9 96918298 96918856 -20943771 + MER67D LTR ERV1 1 510 -4 1630 145 19 32 chr9 96918856 96919112 -20943515 + L1MC3 LINE L1 7531 7784 -1 2388 113 48 66 chr9 96919119 96919561 -20943066 + L1MA7 LINE L1 5852 6285 -6 293 276 53 0 chr9 96919637 96919713 -20942914 + MIR SINE MIR 65 144 -64 449 225 0 0 chr9 96919754 96919843 -20942784 + MER106B DNA MER1_type 61 149 -910 183 309 0 29 chr9 96920121 96920189 -20942438 - L3 LINE CR1 -92 1485 1420 2366 106 0 0 chr9 96921011 96921322 -20941305 - AluSx SINE Alu -1 311 1 378 274 26 9 chr9 96921353 96921466 -20941161 - MIR SINE MIR -79 183 69 271 254 188 14 chr9 96921571 96921709 -20940918 + L2 LINE L2 2917 3078 -194 191 306 25 124 chr9 96921724 96921774 -20940853 + L2 LINE L2 3203 3256 -57 2202 94 3 33 chr9 96921774 96921995 -20940632 - AluSx SINE Alu -14 298 87 1208 29 12 23 chr9 96921995 96922166 -20940461 + (GAAA)n Simple_repeat Simple_repeat 1 169 0 2202 94 3 33 chr9 96922166 96922251 -20940376 - AluSx SINE Alu -225 87 1 191 306 25 124 chr9 96922251 96922321 -20940306 + L2 LINE L2 3256 3311 -2 187 286 127 16 chr9 96922311 96922374 -20940253 - MIR SINE MIR -119 89 20 * 23 0 0 0 chr9 96923263 96923286 -20939341 + AT_rich Low_complexity Low_complexity 1 23 0 1331 123 38 0 chr9 96923998 96924209 -20938418 + L1PA16 LINE L1 5945 6163 -3 535 299 45 6 chr9 96924234 96924453 -20938174 + L1P4 LINE L1 5588 5826 -348 324 127 0 18 chr9 96924453 96924508 -20938119 - L2 LINE L2 -65 3248 3195 343 195 97 44 chr9 96924508 96924621 -20938006 + L1MC4a LINE L1 5783 5901 -1907 1267 188 60 5 chr9 96925057 96925159 -20937468 + MER30 DNA MER1_type 1 96 -134 225 0 0 0 chr9 96925159 96925184 -20937443 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 2422 76 3 3 chr9 96925193 96925494 -20937133 - AluSp SINE Alu -12 301 1 1267 188 60 5 chr9 96925494 96925599 -20937028 + MER30 DNA MER1_type 103 230 0 337 304 61 17 chr9 96925639 96925754 -20936873 + MIR SINE MIR 21 140 -68 2254 94 6 28 chr9 96926055 96926374 -20936253 - AluSq SINE Alu -1 312 1 371 323 99 21 chr9 96926877 96927069 -20935558 - MIR SINE MIR -15 247 41 358 266 126 35 chr9 96927232 96927375 -20935252 - MIR SINE MIR -72 190 35 196 238 88 0 chr9 96927616 96927696 -20934931 - MIR SINE MIR -112 150 64 867 205 0 56 chr9 96927704 96927899 -20934728 + L1MA9 LINE L1 5945 6128 -184 1406 198 0 32 chr9 96927910 96928188 -20934439 - AluJo SINE Alu -14 298 30 805 218 0 45 chr9 96928188 96928390 -20934237 + L1MA10 LINE L1 6142 6334 0 251 113 32 97 chr9 96928489 96928551 -20934076 - PABL_B LTR ERV1 -71 596 539 202 308 26 26 chr9 96928823 96928901 -20933726 + MIR SINE MIR 21 98 -110 324 298 14 86 chr9 96928993 96929084 -20933543 + MIR SINE MIR 61 139 -69 1967 156 0 0 chr9 96929084 96929386 -20933241 + AluSx SINE Alu 1 302 -10 324 298 14 86 chr9 96929386 96929445 -20933182 + MIR SINE MIR 139 201 -7 270 248 37 40 chr9 96929523 96929645 -20932982 + MIR SINE MIR 6 129 -79 336 324 139 29 chr9 96929760 96930041 -20932586 + MLT1I LTR MaLR 98 409 0 362 335 42 18 chr9 96931787 96931954 -20930673 + MIR3 SINE MIR 21 191 -17 2207 102 10 26 chr9 96932396 96932748 -20929879 + AluSg SINE Alu 1 347 0 2269 107 7 0 chr9 96933172 96933480 -20929147 - AluY SINE Alu 0 311 2 1500 178 16 66 chr9 96934402 96934577 -20928050 - AluJo SINE Alu -8 304 122 396 0 0 0 chr9 96934577 96934621 -20928006 + (TA)n Simple_repeat Simple_repeat 2 45 0 2392 93 0 0 chr9 96934621 96934921 -20927706 - AluY SINE Alu -11 300 1 1500 178 16 66 chr9 96934921 96935064 -20927563 - AluJo SINE Alu -188 124 1 454 216 90 37 chr9 96935325 96935459 -20927168 + MIR SINE MIR 20 160 -102 486 272 99 26 chr9 96935493 96935684 -20926943 + MIR SINE MIR 58 262 0 258 81 0 0 chr9 96935926 96935963 -20926664 + (TG)n Simple_repeat Simple_repeat 2 38 0 306 0 0 0 chr9 96936207 96936241 -20926386 + (TG)n Simple_repeat Simple_repeat 2 35 0 212 297 11 77 chr9 96937614 96937705 -20924922 - L2 LINE L2 -6 3266 3182 * 361 329 29 18 chr9 96937704 96937874 -20924753 + MIR SINE MIR 20 191 -71 227 302 201 6 chr9 96937954 96938123 -20924504 - MIR SINE MIR -13 249 48 1890 144 0 14 chr9 96938924 96939238 -20923389 + AluSg SINE Alu 1 310 0 321 47 0 0 chr9 96939372 96939415 -20923212 + (TG)n Simple_repeat Simple_repeat 2 44 0 945 289 120 48 chr9 96939519 96940769 -20921858 - L1MC4a LINE L1 -302 5819 4563 30 45 0 0 chr9 96940773 96940817 -20921810 + AT_rich Low_complexity Low_complexity 1 44 0 404 284 14 40 chr9 96940928 96941076 -20921551 + MLT1J2 LTR MaLR 62 205 -245 553 233 26 0 chr9 96941439 96941555 -20921072 + MIR SINE MIR 32 150 -112 662 353 114 16 chr9 96941769 96942381 -20920246 - L1MC4a LINE L1 -2466 3680 3009 423 352 82 17 chr9 96942626 96942859 -20919768 + MIR SINE MIR 14 261 -1 1975 211 104 0 chr9 96943280 96943730 -20918897 + MLT1D LTR MaLR 1 497 -8 374 287 57 16 chr9 96943751 96943873 -20918754 - MIR SINE MIR -111 151 25 21 0 0 0 chr9 96944110 96944131 -20918496 + AT_rich Low_complexity Low_complexity 1 21 0 359 325 47 18 chr9 96944435 96944615 -20918012 - MIR SINE MIR -71 191 9 2214 123 0 3 chr9 96944847 96945149 -20917478 + AluSx SINE Alu 1 301 -11 260 283 65 0 chr9 96945546 96945572 -20917055 + MER103 DNA DNA 22 45 -121 580 229 0 73 chr9 96945572 96945764 -20916863 - MER104 DNA MER2_type -1 179 2 260 283 65 0 chr9 96945764 96945829 -20916798 + MER103 DNA DNA 45 119 -47 201 217 185 33 chr9 96946491 96946583 -20916044 + MIR SINE MIR 39 144 -64 2545 66 0 0 chr9 96946618 96946923 -20915704 + AluY SINE Alu 1 305 -6 198 382 62 0 chr9 96947673 96947817 -20914810 - L2 LINE L2 -35 3237 3085 225 0 0 0 chr9 96947991 96948016 -20914611 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 2234 120 0 0 chr9 96948107 96948415 -20914212 + AluY SINE Alu 1 308 -3 198 281 53 140 chr9 96948456 96948627 -20914000 - L2 LINE L2 -198 3074 2919 400 256 22 0 chr9 96948719 96948809 -20913818 - L2 LINE L2 -5 3308 3217 415 256 160 23 chr9 96948853 96949053 -20913574 - MIR SINE MIR 0 262 38 * 782 271 29 42 chr9 96949050 96949290 -20913337 + MIR SINE MIR 26 262 0 721 226 20 64 chr9 96949778 96949982 -20912645 - MIR SINE MIR -5 257 63 212 186 0 23 chr9 96949979 96950022 -20912605 + MIR SINE MIR 69 110 -152 * 261 291 55 27 chr9 96950091 96950201 -20912426 - MIR SINE MIR -66 142 30 355 304 35 0 chr9 96950976 96951091 -20911536 - MIR3 SINE MIR -17 191 73 210 328 197 5 chr9 96951137 96951335 -20911292 - MIR SINE MIR -18 244 9 469 296 20 25 chr9 96951984 96952186 -20910441 + MIR SINE MIR 52 256 -6 438 332 40 5 chr9 96952314 96952516 -20910111 + MIR SINE MIR 49 257 -5 344 259 12 0 chr9 96953764 96953845 -20908782 - MIR SINE MIR -22 240 159 1138 216 145 75 chr9 96953846 96954300 -20908327 + MLT1D LTR MaLR 2 487 -18 191 258 280 0 chr9 96954303 96954396 -20908231 - MIR SINE MIR -98 164 46 * 222 280 37 56 chr9 96954343 96954450 -20908177 + MIR3 SINE MIR 12 116 -92 244 281 170 33 chr9 96954561 96954714 -20907913 - MIR3 SINE MIR -14 194 21 349 245 69 11 chr9 96954757 96954877 -20907750 - MIR3 SINE MIR -38 170 46 229 230 216 50 chr9 96955016 96955155 -20907472 + L2 LINE L2 3148 3309 -4 2146 234 39 39 chr9 96955301 96955840 -20906787 + MLT1F LTR MaLR 4 542 0 313 280 45 30 chr9 96956111 96956243 -20906384 + MIR3 SINE MIR 15 148 -60 343 318 52 19 chr9 96956317 96956471 -20906156 + MIR SINE MIR 92 250 -12 1669 272 114 111 chr9 96956545 96957977 -20904650 + L1M2 LINE L1 2 1438 -5411 9405 191 52 46 chr9 96957980 96958122 -20904505 + L1PA13 LINE L1 2941 3081 -3082 2296 100 3 13 chr9 96958122 96958431 -20904196 + AluSp SINE Alu 1 306 -7 9405 191 52 46 chr9 96958431 96959109 -20903518 + L1PA13 LINE L1 3081 3754 -2409 2386 76 0 20 chr9 96959109 96959412 -20903215 + AluSg SINE Alu 1 297 -13 9405 191 52 46 chr9 96959412 96960515 -20902112 + L1PA13 LINE L1 3754 4849 -1314 2238 129 161 11 chr9 96960515 96960887 -20901740 - MSTA LTR MaLR 0 428 1 9405 191 52 46 chr9 96960887 96961604 -20901023 + L1PA13 LINE L1 4849 5612 -551 2219 131 0 0 chr9 96961604 96961916 -20900711 + AluSx SINE Alu 1 312 0 9405 191 52 46 chr9 96961916 96962468 -20900159 + L1PA13 LINE L1 5612 6159 -4 519 235 43 68 chr9 96962527 96962761 -20899866 - L2 LINE L2 -7 3306 3079 879 278 20 28 chr9 96962773 96963165 -20899462 - L1MDa LINE L1 -1406 5134 4746 * 4683 229 31 64 chr9 96963142 96964035 -20898592 - L1MDa LINE L1 -1701 4839 4026 207 0 0 0 chr9 96964035 96964058 -20898569 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 4683 229 31 64 chr9 96964058 96964825 -20897802 - L1MDa LINE L1 -2514 4026 3235 1320 195 69 46 chr9 96964836 96965184 -20897443 + MLT1A1 LTR MaLR 1 356 -9 2290 254 40 1 chr9 96965207 96965860 -20896767 - L1MDa LINE L1 -3317 3223 2546 1601 213 17 3 chr9 96965860 96966156 -20896471 + AluJb SINE Alu 1 300 -12 2526 132 97 2 chr9 96966253 96966678 -20895949 + MER4E LTR ERV1 1 465 -314 1155 106 0 0 chr9 96966731 96966882 -20895745 + MER4E LTR ERV1 616 766 0 1052 184 0 0 chr9 96966886 96967044 -20895583 - FRAM SINE Alu -7 159 2 1922 257 101 53 chr9 96967051 96967665 -20894962 - L1MDa LINE L1 -5526 1014 259 360 0 0 0 chr9 96967665 96967705 -20894922 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 1922 257 101 53 chr9 96967705 96967938 -20894689 - L1MDa LINE L1 -6281 259 39 632 185 172 7 chr9 96967939 96968090 -20894537 + MER58C DNA MER1_type 40 215 0 250 340 0 9 chr9 96968096 96968202 -20894425 - L2 LINE L2 -520 2794 2690 214 277 0 15 chr9 96968352 96968417 -20894210 - MIR SINE MIR -168 94 31 268 325 17 17 chr9 96968991 96969108 -20893519 + MIR3 SINE MIR 56 172 -36 2068 105 3 7 chr9 96969194 96969505 -20893122 - AluSx SINE Alu 0 310 1 2068 105 16 40 chr9 96969521 96969825 -20892802 - AluSq SINE Alu -16 297 1 1174 137 16 21 chr9 96970229 96970419 -20892208 - AluJo SINE Alu -3 309 121 604 194 56 14 chr9 96970429 96970573 -20892054 - L1MB7 LINE L1 0 6184 6035 951 118 0 96 chr9 96970588 96970766 -20891861 - AluSg/x SINE Alu -26 283 123 1069 134 0 0 chr9 96970773 96970930 -20891697 - AluSg/x SINE Alu -20 292 136 6965 69 2 21 chr9 96970932 96971901 -20890726 - SVA Other Other 0 1386 474 663 185 30 22 chr9 96972076 96972211 -20890416 + AluJo SINE Alu 2 137 -175 5553 66 24 64 chr9 96972418 96973266 -20889361 - SVA Other Other -520 866 53 216 0 0 0 chr9 96973266 96973290 -20889337 + (GGGAGA)n Simple_repeat Simple_repeat 3 26 0 734 163 30 22 chr9 96973299 96973434 -20889193 - AluJo SINE Alu -175 137 2 248 298 155 11 chr9 96973533 96973714 -20888913 + MIR SINE MIR 56 262 0 260 281 36 15 chr9 96973790 96973913 -20888714 - MIR SINE MIR -67 141 38 3360 100 18 59 chr9 96974962 96975271 -20887356 + L1PA16 LINE L1 5620 5897 -269 2221 116 0 3 chr9 96975271 96975572 -20887055 + AluSq SINE Alu 1 300 -13 3360 100 18 59 chr9 96975572 96975823 -20886804 + L1PA16 LINE L1 5897 6157 -9 384 301 15 8 chr9 96975943 96976076 -20886551 + MIR SINE MIR 57 190 -72 351 250 50 96 chr9 96976340 96976560 -20886067 + MIR SINE MIR 28 237 -25 253 324 86 45 chr9 96976789 96977011 -20885616 - MIR SINE MIR -28 234 4 2082 68 0 19 chr9 96977013 96977277 -20885350 - AluY SINE Alu -15 296 38 4874 155 52 6 chr9 96977415 96978268 -20884359 + L1MB2 LINE L1 5282 6171 0 298 319 18 0 chr9 96978556 96978669 -20883958 + MIR3 SINE MIR 90 204 -4 318 80 0 0 chr9 96978903 96978953 -20883674 + (A)n Simple_repeat Simple_repeat 1 50 0 2303 92 0 0 chr9 96979008 96979309 -20883318 - AluSc SINE Alu 0 301 1 727 236 39 10 chr9 96979454 96979662 -20882965 - MIR SINE MIR 0 262 49 221 234 47 75 chr9 96979772 96979879 -20882748 - MIR SINE MIR -84 124 21 319 335 76 0 chr9 96979971 96980129 -20882498 - MIR SINE MIR -6 256 87 632 246 52 63 chr9 96980264 96980516 -20882111 - MIR SINE MIR -11 251 3 4197 183 37 43 chr9 96980556 96981400 -20881227 - MER21B LTR ERV1 -11 852 14 294 302 54 39 chr9 96981405 96981534 -20881093 - MIR SINE MIR -100 162 32 234 259 114 46 chr9 96983227 96983358 -20879269 + L1ME3A LINE L1 6022 6161 -9 486 33 0 0 chr9 96983367 96983427 -20879200 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 342 268 80 7 chr9 96983439 96983577 -20879050 + L1ME4a LINE L1 5973 6120 -1 351 296 48 16 chr9 96984161 96984286 -20878341 - MIR SINE MIR -85 177 49 23 54 0 0 chr9 96984544 96984581 -20878046 + AT_rich Low_complexity Low_complexity 1 37 0 360 0 0 0 chr9 96984774 96984814 -20877813 + (CA)n Simple_repeat Simple_repeat 2 41 0 24 53 0 0 chr9 96984949 96984987 -20877640 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr9 96985128 96985149 -20877478 + AT_rich Low_complexity Low_complexity 1 21 0 309 259 50 37 chr9 96985717 96985890 -20876737 + L1ME LINE L1 5634 5811 -359 467 254 0 16 chr9 96985954 96986076 -20876551 + MIR SINE MIR 51 170 -92 551 258 70 37 chr9 96986164 96986408 -20876219 - MIR SINE MIR 0 262 11 2376 81 3 3 chr9 96986540 96986847 -20875780 - AluY SINE Alu -4 307 1 473 267 50 6 chr9 96987574 96987735 -20874892 + MIR SINE MIR 18 185 -77 403 289 0 0 chr9 96988946 96989060 -20873567 + MIR SINE MIR 117 230 -32 259 377 35 0 chr9 96989483 96989597 -20873030 + MIR SINE MIR 32 149 -59 1236 219 100 76 chr9 96989649 96990187 -20872440 + MLT1H1 LTR MaLR 4 554 -1 22 0 0 0 chr9 96990690 96990712 -20871915 + AT_rich Low_complexity Low_complexity 1 22 0 1485 224 129 47 chr9 96990746 96991211 -20871416 - MLT1D LTR MaLR -2 503 1 253 218 177 20 chr9 96992546 96992697 -20869930 + MIR3 SINE MIR 5 184 -75 432 0 0 0 chr9 96993110 96993158 -20869469 + (CA)n Simple_repeat Simple_repeat 2 49 0 530 283 97 54 chr9 96993433 96993939 -20868688 + MLT1K LTR MaLR 5 580 -8 393 58 0 0 chr9 96994691 96994743 -20867884 + (CA)n Simple_repeat Simple_repeat 2 53 0 290 264 151 0 chr9 96995227 96995333 -20867294 - MIR SINE MIR -25 237 116 212 254 45 4 chr9 96995896 96995982 -20866645 - MIR SINE MIR -65 143 55 303 325 32 38 chr9 96996071 96996228 -20866399 - MIR SINE MIR -79 183 28 223 301 120 15 chr9 96996730 96996989 -20865638 + L2 LINE L2 2625 2910 -404 833 300 29 47 chr9 96996994 96997084 -20865543 - LTR16A LTR ERVL -17 433 343 1221 189 177 0 chr9 96997084 96997349 -20865278 + AluJo SINE Alu 1 312 0 833 300 29 47 chr9 96997349 96997601 -20865026 - LTR16A LTR ERVL -107 343 97 222 37 0 0 chr9 96997761 96997788 -20864839 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 369 256 37 0 chr9 96997796 96997878 -20864749 - L2 LINE L2 -21 3292 3208 218 284 7 64 chr9 96998469 96998520 -20864107 + GA-rich Low_complexity Low_complexity 2 54 -80 2035 114 42 0 chr9 96998520 96998809 -20863818 + AluSg SINE Alu 1 301 -9 218 284 7 64 chr9 96998809 96998898 -20863729 + GA-rich Low_complexity Low_complexity 54 134 0 254 307 13 27 chr9 96998942 96999092 -20863535 + GA-rich Low_complexity Low_complexity 2 149 0 * 268 285 16 24 chr9 96998995 96999118 -20863509 + A-rich Low_complexity Low_complexity 5 126 0 274 314 11 18 chr9 96999160 96999270 -20863357 + GA-rich Low_complexity Low_complexity 1 110 -255 1790 44 0 0 chr9 96999270 96999473 -20863154 + AluY SINE Alu 107 309 -2 274 314 11 18 chr9 96999473 96999528 -20863099 + GA-rich Low_complexity Low_complexity 110 365 0 330 355 37 14 chr9 97000060 97000277 -20862350 - MIR SINE MIR -13 249 28 1350 244 65 34 chr9 97000499 97000805 -20861822 - MLT1C LTR MaLR 0 467 141 2229 107 23 3 chr9 97000805 97001104 -20861523 + AluSx SINE Alu 1 305 -7 1350 244 65 34 chr9 97001104 97001240 -20861387 - MLT1C LTR MaLR -326 141 11 977 193 6 0 chr9 97001549 97001715 -20860912 - MER58B DNA MER1_type 0 341 175 1491 164 31 105 chr9 97001721 97002045 -20860582 + AluJb SINE Alu 5 304 -8 212 200 22 0 chr9 97002173 97002218 -20860409 + MIR SINE MIR 106 151 -111 234 231 58 0 chr9 97002319 97002371 -20860256 - L2 LINE L2 -1 3271 3217 2197 122 0 0 chr9 97002872 97003183 -20859444 + AluY SINE Alu 1 311 0 2277 186 61 14 chr9 97003219 97003714 -20858913 - L1MB8 LINE L1 -10 6168 5651 511 252 70 70 chr9 97003770 97003870 -20858757 + MIR SINE MIR 1 100 -162 1716 121 4 0 chr9 97003870 97004102 -20858525 - AluSx SINE Alu -22 290 58 511 252 70 70 chr9 97004102 97004259 -20858368 + MIR SINE MIR 99 258 -4 330 335 16 39 chr9 97004554 97004808 -20857819 - L2 LINE L2 -212 3060 2813 383 264 49 21 chr9 97004954 97005098 -20857529 - MIR SINE MIR 0 262 115 234 208 52 39 chr9 97005106 97005183 -20857444 + MIR SINE MIR 170 247 -15 2129 142 94 13 chr9 97005527 97005922 -20856705 + MSTA LTR MaLR 1 427 -1 13019 138 98 7 chr9 97006623 97008839 -20853788 + Tigger1 DNA MER2_type 2 2418 0 1395 167 29 16 chr9 97009001 97009246 -20853381 + LTR10B LTR ERV1 300 547 0 239 317 8 0 chr9 97009288 97009408 -20853219 + (TA)n Simple_repeat Simple_repeat 2 122 0 6387 86 19 2 chr9 97009738 97010599 -20852028 + L1PA10 LINE L1 5277 6151 -17 385 242 103 18 chr9 97010977 97011142 -20851485 + MIR3 SINE MIR 16 194 -14 387 0 0 0 chr9 97011240 97011283 -20851344 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 304 281 93 7 chr9 97011342 97011481 -20851146 + MIR SINE MIR 48 198 -64 185 258 81 73 chr9 97011469 97011593 -20851034 + L2 LINE L2 3189 3313 0 * 1504 226 81 27 chr9 97011729 97012211 -20850416 - Charlie4a DNA MER1_type 0 508 1 237 65 0 0 chr9 97012391 97012422 -20850205 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 226 246 0 0 chr9 97012433 97012490 -20850137 + MIR SINE MIR 84 140 -68 188 183 22 0 chr9 97013160 97013202 -20849425 - MIR SINE MIR -62 164 97 443 323 35 10 chr9 97013305 97013503 -20849124 + MIR SINE MIR 49 251 -11 324 70 0 0 chr9 97013950 97013993 -20848634 + (TCCA)n Simple_repeat Simple_repeat 3 45 0 959 157 6 18 chr9 97014572 97014738 -20847889 + FRAM SINE Alu 1 160 -16 934 296 59 23 chr9 97014741 97015184 -20847443 + L1ME4a LINE L1 5445 5903 -218 259 318 0 0 chr9 97015294 97015357 -20847270 + MLT1K LTR MaLR 2 64 -524 722 199 45 7 chr9 97016231 97016429 -20846198 - MLT1B LTR MaLR 0 390 149 675 139 0 0 chr9 97016474 97016575 -20846052 + AluSg/x SINE Alu 188 288 -22 869 142 84 124 chr9 97016581 97016715 -20845912 - MLT1C LTR MaLR -172 295 172 1563 87 0 0 chr9 97016715 97016911 -20845716 - AluY SINE Alu -16 295 100 869 142 84 124 chr9 97016911 97017001 -20845626 - MLT1C LTR MaLR -295 172 80 1008 134 42 0 chr9 97017001 97017263 -20845364 + L1MA4A LINE L1 5979 6301 -2 2084 126 0 0 chr9 97017283 97017561 -20845066 + AluSx SINE Alu 5 319 0 221 27 54 0 chr9 97017561 97017598 -20845029 + (CAAAA)n Simple_repeat Simple_repeat 3 180 0 522 133 36 0 chr9 97017600 97017683 -20844944 - MLT1C LTR MaLR -301 89 4 243 125 0 0 chr9 97017756 97017796 -20844831 + (TTCA)n Simple_repeat Simple_repeat 3 42 0 1509 199 30 3 chr9 97018260 97018562 -20844065 - AluJb SINE Alu -2 310 1 263 275 176 43 chr9 97018637 97018870 -20843757 - L2 LINE L2 -20 3293 3030 218 321 0 0 chr9 97018916 97018969 -20843658 + L2 LINE L2 3209 3261 -11 192 279 81 0 chr9 97018988 97019074 -20843553 + MIR SINE MIR 114 206 -56 239 244 35 0 chr9 97019351 97019437 -20843190 - L2 LINE L2 -302 2970 2882 2012 149 0 0 chr9 97019574 97019863 -20842764 - AluJb SINE Alu -23 289 1 813 218 0 36 chr9 97019990 97020183 -20842444 + AluJb SINE Alu 115 300 -12 1780 131 3 108 chr9 97020407 97020607 -20842020 - AluSp SINE Alu -1 312 159 2321 98 25 0 chr9 97020607 97020933 -20841694 - L1PA10 LINE L1 -19 6149 5816 1780 131 3 108 chr9 97020933 97021067 -20841560 - AluSp SINE Alu -154 159 13 232 311 0 0 chr9 97021094 97021155 -20841472 + GA-rich Low_complexity Low_complexity 1 61 0 202 290 0 86 chr9 97021201 97021294 -20841333 + L2 LINE L2 2967 3051 -221 1818 158 24 10 chr9 97021497 97021616 -20841011 + AluJo SINE Alu 2 118 -194 459 0 0 0 chr9 97021616 97021667 -20840960 + (CA)n Simple_repeat Simple_repeat 2 52 0 1818 158 24 10 chr9 97021667 97021845 -20840782 + AluJo SINE Alu 118 303 -9 198 167 0 0 chr9 97021851 97021887 -20840740 + GA-rich Low_complexity Low_complexity 1 36 0 286 296 64 24 chr9 97022494 97022619 -20840008 + MIR SINE MIR 79 208 -54 446 323 66 15 chr9 97023312 97023510 -20839117 - MIR SINE MIR -14 248 41 226 228 38 25 chr9 97023592 97023671 -20838956 + L1MC5 LINE L1 7847 7926 -35 373 293 41 0 chr9 97023709 97023832 -20838795 + MIR SINE MIR 133 260 -2 28 48 0 0 chr9 97024048 97024090 -20838537 + AT_rich Low_complexity Low_complexity 1 42 0 322 214 99 30 chr9 97024486 97024617 -20838010 - L1ME4a LINE L1 0 6121 5982 598 203 177 0 chr9 97024703 97024861 -20837766 + MER53 DNA DNA 1 186 -3 225 331 25 16 chr9 97024922 97025043 -20837584 + L2 LINE L2 3137 3258 -55 315 0 0 0 chr9 97025055 97025090 -20837537 + (CA)n Simple_repeat Simple_repeat 1 35 0 306 315 43 18 chr9 97025346 97025561 -20837066 + MIR SINE MIR 44 262 0 1052 170 0 13 chr9 97026380 97026639 -20835988 - AluJb SINE Alu -7 305 2 307 281 35 18 chr9 97026644 97026758 -20835869 - MIR SINE MIR -63 145 30 2024 134 40 11 chr9 97026958 97027309 -20835318 + MER46B DNA MER2_type 1 236 0 709 308 51 21 chr9 97028027 97028164 -20834463 - LTR16C LTR ERVL -2 489 358 1743 126 93 68 chr9 97028164 97028215 -20834412 - THE1C LTR MaLR 0 375 327 1957 98 64 20 chr9 97028215 97028510 -20834117 - AluSq SINE Alu -1 312 5 1743 126 93 68 chr9 97028510 97028824 -20833803 - THE1C LTR MaLR -48 327 1 709 308 51 21 chr9 97028824 97029017 -20833610 - LTR16C LTR ERVL -133 358 149 602 285 30 33 chr9 97029399 97029669 -20832958 + L1MC4a LINE L1 5664 5932 -1876 1930 161 0 10 chr9 97030020 97030319 -20832308 + AluJo SINE Alu 1 296 -16 1609 177 7 27 chr9 97030562 97030861 -20831766 - AluJb SINE Alu -9 303 11 2482 216 32 66 chr9 97031431 97032116 -20830511 + LTR8 LTR ERV1 30 691 0 209 309 37 0 chr9 97032160 97032241 -20830386 - MIR SINE MIR -70 192 109 210 242 15 30 chr9 97032612 97032678 -20829949 + CT-rich Low_complexity Low_complexity 2 66 0 243 125 0 0 chr9 97032986 97033026 -20829601 + (TG)n Simple_repeat Simple_repeat 1 40 0 234 269 0 0 chr9 97033085 97033137 -20829490 + Tigger3b DNA MER2_type 27 78 -1153 620 198 112 0 chr9 97033138 97033254 -20829373 + AluJ SINE Alu 1 129 -173 499 248 9 0 chr9 97033262 97033367 -20829260 + AluJ SINE Alu 132 237 -75 3959 130 307 21 chr9 97033367 97033649 -20828978 + Tigger3b DNA MER2_type 71 271 -2757 2065 112 38 3 chr9 97033649 97033980 -20828647 + AluSx SINE Alu 1 341 0 3959 130 307 21 chr9 97033980 97034598 -20828029 + Tigger3b DNA MER2_type 271 1231 0 295 122 0 20 chr9 97034598 97034644 -20827983 + MLT2B2 LTR ERVL 471 515 0 756 240 115 105 chr9 97034644 97035286 -20827341 + L2 LINE L2 2665 3281 -32 457 182 0 0 chr9 97035291 97035368 -20827259 + MLT1G1 LTR MaLR 1 77 -518 270 358 42 49 chr9 97035814 97036102 -20826525 + L2 LINE L2 2951 3236 -36 871 243 8 38 chr9 97036352 97036587 -20826040 + MIR SINE MIR 35 262 0 781 203 62 21 chr9 97037467 97037659 -20824968 - MER115 DNA AcHobo -2 691 492 232 91 45 23 chr9 97038699 97038743 -20823884 - HSMAR1 DNA Mariner -1242 45 1 388 319 62 0 chr9 97038873 97039083 -20823544 - MIR SINE MIR 0 262 40 533 291 45 20 chr9 97040161 97040360 -20822267 + MIR SINE MIR 59 262 0 203 259 35 17 chr9 97040489 97040547 -20822080 + L3 LINE CR1 1292 1350 -227 1793 276 113 51 chr9 97040749 97041916 -20820711 - L2 LINE L2 -296 3017 1780 634 189 25 25 chr9 97041999 97042158 -20820469 - MER69 DNA AcHobo 0 2526 2368 896 178 61 0 chr9 97042192 97042355 -20820272 - MER20 DNA MER1_type -1 218 46 477 304 128 8 chr9 97042527 97042777 -20819850 - L2 LINE L2 -1755 1559 1280 1736 198 19 19 chr9 97043211 97043524 -20819103 + L1MD3 LINE L1 7606 7922 -73 1984 72 46 4 chr9 97043524 97043815 -20818812 + AluY SINE Alu 7 308 0 1736 198 19 19 chr9 97043815 97043874 -20818753 + L1MD3 LINE L1 7921 7979 -16 1918 151 0 17 chr9 97044808 97045099 -20817528 - AluSx SINE Alu -26 286 1 209 288 0 0 chr9 97045104 97045163 -20817464 + MIR SINE MIR 96 154 -108 253 261 43 11 chr9 97045896 97045988 -20816639 - L2 LINE L2 -291 2981 2887 374 241 117 14 chr9 97046089 97046234 -20816393 + MIR3 SINE MIR 6 165 -43 234 0 0 0 chr9 97046443 97046469 -20816158 + (TTA)n Simple_repeat Simple_repeat 2 27 0 276 345 0 9 chr9 97046741 97046851 -20815776 - MIR SINE MIR -115 147 39 2309 234 101 63 chr9 97047259 97048024 -20814603 + MER21B LTR ERV1 12 805 -58 380 281 36 66 chr9 97048254 97048421 -20814206 - MIR SINE MIR -81 181 20 1787 158 50 0 chr9 97048460 97048757 -20813870 + AluJb SINE Alu 1 312 0 370 357 59 34 chr9 97048975 97049362 -20813265 + L2 LINE L2 2916 3312 -1 266 211 0 0 chr9 97049457 97049514 -20813113 + MER5A DNA MER1_type 53 109 -80 223 325 13 0 chr9 97049669 97049746 -20812881 - L2 LINE L2 -24 3248 3171 2819 73 3 0 chr9 97049759 97050113 -20812514 + THE1A LTR MaLR 1 355 0 343 243 103 15 chr9 97050565 97050701 -20811926 + L1ME4a LINE L1 5779 5926 -195 283 302 0 26 chr9 97050878 97050994 -20811633 + MIR SINE MIR 68 180 -82 214 239 56 0 chr9 97051195 97051266 -20811361 + MIR SINE MIR 67 141 -67 207 0 0 0 chr9 97051536 97051559 -20811068 + (T)n Simple_repeat Simple_repeat 1 23 0 1809 167 17 0 chr9 97051559 97051852 -20810775 + AluJb SINE Alu 1 298 -14 427 269 8 15 chr9 97052511 97052641 -20809986 + L2 LINE L2 3185 3313 0 504 272 8 0 chr9 97052651 97052776 -20809851 - MIR SINE MIR -96 166 41 2179 164 48 17 chr9 97052823 97053163 -20809464 - MSTA LTR MaLR 0 428 71 2124 154 19 21 chr9 97053163 97053202 -20809425 - THE1C LTR MaLR 0 375 337 2352 96 0 0 chr9 97053202 97053505 -20809122 + AluY SINE Alu 1 303 -8 2124 154 19 21 chr9 97053505 97053841 -20808786 - THE1C LTR MaLR -38 337 1 2179 164 48 17 chr9 97053841 97053915 -20808712 - MSTA LTR MaLR -357 71 1 629 297 78 30 chr9 97054314 97054677 -20807950 + L1MC4a LINE L1 5568 5947 -174 275 272 140 29 chr9 97055620 97055756 -20806871 - L3 LINE CR1 -2 1575 1425 4206 123 5 25 chr9 97055882 97056022 -20806605 - MER41B LTR ERV1 0 635 494 2102 119 0 64 chr9 97056022 97056350 -20806277 + AluSx SINE Alu 1 307 -5 4206 123 5 25 chr9 97056350 97056857 -20805770 - MER41B LTR ERV1 -141 494 1 236 247 164 0 chr9 97056900 97056973 -20805654 - MIR3 SINE MIR -14 194 110 226 267 105 12 chr9 97057140 97057226 -20805401 - MIR SINE MIR -7 255 162 24 0 0 0 chr9 97057633 97057657 -20804970 + AT_rich Low_complexity Low_complexity 1 24 0 340 111 32 0 chr9 97057747 97057810 -20804817 + (CA)n Simple_repeat Simple_repeat 2 66 0 510 252 89 42 chr9 97058521 97058735 -20803892 - MIR SINE MIR -26 236 13 305 208 56 0 chr9 97060079 97060151 -20802476 - MIR SINE MIR -79 183 108 407 287 54 18 chr9 97060728 97060895 -20801732 - MIR SINE MIR -44 218 46 182 231 39 0 chr9 97062918 97062970 -20799657 + L2 LINE L2 2823 2876 -437 333 319 78 59 chr9 97063477 97064077 -20798550 - L2 LINE L2 -3 3310 2686 249 358 49 24 chr9 97064068 97064191 -20798436 - L2 LINE L2 -21 3251 3126 * 333 293 112 48 chr9 97064217 97064466 -20798161 + MLT1J LTR MaLR 9 273 -238 2314 108 0 0 chr9 97064617 97064922 -20797705 + AluSx SINE Alu 1 305 -7 262 298 58 16 chr9 97064922 97065043 -20797584 + MLT1J LTR MaLR 378 503 -8 2055 84 14 3 chr9 97066384 97066669 -20795958 + L1PA13 LINE L1 5872 6159 -4 256 325 19 39 chr9 97066804 97066958 -20795669 + MIR SINE MIR 33 183 -79 460 298 130 19 chr9 97067151 97067359 -20795268 + MIR SINE MIR 21 251 -11 207 167 0 0 chr9 97067435 97067477 -20795150 + A-rich Low_complexity Low_complexity 1 42 0 366 248 43 12 chr9 97067497 97067634 -20794993 + MIR SINE MIR 23 160 -58 909 204 70 5 chr9 97068087 97068273 -20794354 - MER20 DNA MER1_type -6 213 16 2726 142 69 2 chr9 97068752 97069202 -20793425 - L1MB3 LINE L1 -3 6180 5701 486 310 49 11 chr9 97069452 97069636 -20792991 - MIR SINE MIR -48 214 24 980 95 7 0 chr9 97070365 97070502 -20792125 + AluSp/q SINE Alu 176 313 0 266 320 19 10 chr9 97070643 97070746 -20791881 - L2 LINE L2 -1686 1628 1525 369 307 39 8 chr9 97071349 97071476 -20791151 - MER117 DNA MER1_type -11 186 56 254 242 116 11 chr9 97072108 97072203 -20790424 + MIR3 SINE MIR 84 188 -20 411 326 8 16 chr9 97072354 97072483 -20790144 - MIR SINE MIR -65 143 16 360 326 67 28 chr9 97072812 97072990 -20789637 - MIR SINE MIR -16 246 62 542 290 140 0 chr9 97073223 97073437 -20789190 - MIR SINE MIR -15 247 4 661 236 168 0 chr9 97073443 97073604 -20789023 - MER5A DNA MER1_type -1 188 1 998 216 9 69 chr9 97073624 97073856 -20788771 - MER58A DNA MER1_type -6 218 1 946 229 6 0 chr9 97073930 97074113 -20788514 + MER5A DNA MER1_type 1 184 -5 333 354 25 34 chr9 97074196 97074433 -20788194 + MIR SINE MIR 16 250 -12 462 261 51 40 chr9 97074758 97074934 -20787693 + MIR SINE MIR 13 190 -72 310 239 33 11 chr9 97075120 97075212 -20787415 + MER5B DNA MER1_type 7 100 -78 2368 89 3 13 chr9 97075218 97075533 -20787094 - AluSp SINE Alu -1 312 1 32 67 0 0 chr9 97075567 97075627 -20787000 + AT_rich Low_complexity Low_complexity 1 60 0 21 0 0 0 chr9 97075646 97075667 -20786960 + AT_rich Low_complexity Low_complexity 1 21 0 2234 230 62 25 chr9 97075668 97075810 -20786817 + L1M4 LINE L1 4102 4237 -1909 186 43 0 0 chr9 97075810 97075833 -20786794 + (CATA)n Simple_repeat Simple_repeat 4 26 0 2234 230 62 25 chr9 97075833 97076299 -20786328 + L1M4 LINE L1 4237 4733 -1413 2098 225 104 39 chr9 97076404 97076809 -20785818 - L1MC4 LINE L1 -128 7914 7448 2150 109 0 26 chr9 97076809 97077113 -20785514 - AluSc SINE Alu -13 296 1 2098 225 104 39 chr9 97077113 97077373 -20785254 - L1MC4 LINE L1 -594 7448 7206 2394 80 3 0 chr9 97077443 97077745 -20784882 + AluY SINE Alu 1 303 -8 263 259 0 0 chr9 97077757 97077815 -20784812 - L2 LINE L2 -227 3045 2988 265 337 66 44 chr9 97078025 97078206 -20784421 - L2 LINE L2 -573 2741 2557 343 330 43 27 chr9 97078272 97078457 -20784170 - L2 LINE L2 -161 3111 2924 239 245 0 8 chr9 97078701 97078837 -20783790 + (CCA)n Simple_repeat Simple_repeat 1 134 0 374 293 335 0 chr9 97078850 97079041 -20783586 - MIR SINE MIR -6 256 2 263 331 23 90 chr9 97079553 97079852 -20782775 + L2 LINE L2 2648 2926 -388 309 208 0 65 chr9 97079988 97080065 -20782562 + L2 LINE L2 3242 3313 0 185 384 72 16 chr9 97080237 97080362 -20782265 - L2 LINE L2 -4 3268 3137 345 241 148 43 chr9 97080400 97080562 -20782065 - MIR SINE MIR -18 244 66 199 263 253 0 chr9 97080735 97080830 -20781797 - MIR3 SINE MIR -50 158 40 257 366 64 23 chr9 97081360 97081532 -20781095 - L2 LINE L2 -5 3267 3089 * 497 272 39 91 chr9 97081522 97081776 -20780851 + MIR SINE MIR 8 248 -14 55 62 0 0 chr9 97081784 97081881 -20780746 + AT_rich Low_complexity Low_complexity 1 97 0 225 261 98 33 chr9 97082134 97082226 -20780401 - L2 LINE L2 -31 3282 3185 1772 187 0 0 chr9 97082276 97082576 -20780051 + Tigger3b DNA MER2_type 3 302 -929 756 203 8 8 chr9 97082576 97082709 -20779918 - AluJo SINE Alu -178 134 2 5028 125 69 38 chr9 97082709 97083622 -20779005 + Tigger3b DNA MER2_type 291 1231 0 683 161 25 0 chr9 97083777 97083895 -20778732 - L1MD3 LINE L1 0 7995 7875 832 219 78 44 chr9 97083896 97084166 -20778461 - MLT2D LTR ERVL -135 279 1 387 181 11 32 chr9 97084169 97084263 -20778364 - L1MD3 LINE L1 -123 7872 7781 226 304 54 22 chr9 97084363 97084455 -20778172 + MIR SINE MIR 8 102 -160 368 88 18 0 chr9 97084539 97084596 -20778031 + (CA)n Simple_repeat Simple_repeat 1 58 0 205 327 35 80 chr9 97085531 97085644 -20776983 - L2 LINE L2 -28 3244 3137 532 200 0 24 chr9 97085919 97086044 -20776583 + L1MB7 LINE L1 6054 6175 -9 257 277 0 0 chr9 97086240 97086305 -20776322 + (CATTC)n Simple_repeat Simple_repeat 3 67 0 232 313 52 78 chr9 97086359 97086474 -20776153 - L2 LINE L2 -46 3226 3115 1020 292 4 4 chr9 97086474 97086731 -20775896 - MIR SINE MIR 0 262 6 336 336 51 68 chr9 97086767 97086865 -20775762 - L2 LINE L2 -274 3039 2941 2352 105 0 3 chr9 97086865 97087170 -20775457 + AluSx SINE Alu 1 304 -8 336 336 51 68 chr9 97087170 97087306 -20775321 - L2 LINE L2 -372 2941 2809 881 284 105 21 chr9 97087322 97087752 -20774875 - MLT1L LTR MaLR 0 615 150 225 178 0 0 chr9 97088068 97088113 -20774514 + CT-rich Low_complexity Low_complexity 1 45 0 1825 138 46 89 chr9 97088287 97088679 -20773948 - THE1C LTR MaLR 0 375 1 205 353 12 0 chr9 97089637 97089722 -20772905 + MIR SINE MIR 59 144 -118 2926 214 208 26 chr9 97090142 97091149 -20771478 - L1MC4 LINE L1 -144 7898 6709 318 26 0 0 chr9 97091158 97091197 -20771430 + (TG)n Simple_repeat Simple_repeat 2 40 0 197 119 24 0 chr9 97091198 97091240 -20771387 + GA-rich Low_complexity Low_complexity 2 44 0 2190 109 7 0 chr9 97091252 97091555 -20771072 - AluSg SINE Alu -5 305 1 429 250 0 10 chr9 97092322 97092426 -20770201 + MIR SINE MIR 146 248 -14 1125 195 27 36 chr9 97092571 97092792 -20769835 - MER20 DNA MER1_type 0 219 1 240 313 137 39 chr9 97093258 97093514 -20769113 + MLT1K LTR MaLR 150 430 -158 2101 114 4 0 chr9 97093522 97093840 -20768787 + AluSx SINE Alu 1 319 0 522 133 36 0 chr9 97093842 97093925 -20768702 - MLT1B LTR MaLR -301 89 4 243 125 0 0 chr9 97093998 97094038 -20768589 + (TTCA)n Simple_repeat Simple_repeat 3 42 0 1504 199 30 3 chr9 97094502 97094804 -20767823 - AluJb SINE Alu -2 310 1 333 275 176 43 chr9 97094879 97095112 -20767515 - L2 LINE L2 -20 3293 3030 236 321 0 0 chr9 97095158 97095211 -20767416 + L2 LINE L2 3209 3261 -11 262 267 65 57 chr9 97095376 97095676 -20766951 - L2 LINE L2 -129 3184 2883 1945 156 0 0 chr9 97095813 97096102 -20766525 - AluJb SINE Alu -23 289 1 880 218 0 36 chr9 97096229 97096422 -20766205 + AluJb SINE Alu 115 300 -12 1765 131 3 108 chr9 97096646 97096846 -20765781 - AluSp SINE Alu -1 312 159 2453 98 25 0 chr9 97096846 97097172 -20765455 - L1PA10 LINE L1 -19 6149 5816 1765 131 3 108 chr9 97097172 97097306 -20765321 - AluSp SINE Alu -154 159 13 232 311 0 0 chr9 97097333 97097394 -20765233 + GA-rich Low_complexity Low_complexity 1 61 0 198 302 28 89 chr9 97097417 97097596 -20765031 + L2 LINE L2 2949 3116 -156 1807 158 24 10 chr9 97097737 97097856 -20764771 + AluJo SINE Alu 2 118 -194 459 0 0 0 chr9 97097856 97097907 -20764720 + (CA)n Simple_repeat Simple_repeat 2 52 0 1807 158 24 10 chr9 97097907 97098085 -20764542 + AluJo SINE Alu 118 303 -9 198 167 0 0 chr9 97098091 97098127 -20764500 + GA-rich Low_complexity Low_complexity 1 36 0 319 249 108 11 chr9 97098721 97098859 -20763768 + MIR SINE MIR 58 208 -54 496 323 66 15 chr9 97099552 97099750 -20762877 - MIR SINE MIR -14 248 41 229 228 38 25 chr9 97099832 97099911 -20762716 + L1MC5 LINE L1 7847 7926 -35 405 275 33 6 chr9 97099923 97100072 -20762555 + MIR SINE MIR 18 260 -2 28 48 0 0 chr9 97100288 97100330 -20762297 + AT_rich Low_complexity Low_complexity 1 42 0 332 214 99 30 chr9 97100726 97100857 -20761770 - L1ME4a LINE L1 0 6121 5982 627 199 180 6 chr9 97100943 97101104 -20761523 + MER53 DNA DNA 1 189 0 255 331 25 16 chr9 97101162 97101283 -20761344 + L2 LINE L2 3137 3258 -55 315 0 0 0 chr9 97101295 97101330 -20761297 + (CA)n Simple_repeat Simple_repeat 1 35 0 225 237 17 0 chr9 97101467 97101526 -20761101 - L1ME4a LINE L1 -355 5766 5707 356 303 49 29 chr9 97101586 97101801 -20760826 + MIR SINE MIR 44 262 0 1042 170 0 13 chr9 97102620 97102879 -20759748 - AluJb SINE Alu -7 305 2 344 281 35 18 chr9 97102884 97102998 -20759629 - MIR SINE MIR -63 145 30 2136 134 40 11 chr9 97103198 97103549 -20759078 + MER46B DNA MER2_type 1 236 0 711 300 123 22 chr9 97104267 97104404 -20758223 - LTR16C LTR ERVL -2 489 367 1854 139 87 63 chr9 97104404 97104455 -20758172 - THE1C LTR MaLR 0 375 327 1879 108 64 20 chr9 97104455 97104750 -20757877 - AluSq SINE Alu -1 312 5 1854 139 87 63 chr9 97104750 97105064 -20757563 - THE1C LTR MaLR -48 327 1 711 300 123 22 chr9 97105064 97105293 -20757334 - LTR16C LTR ERVL -124 367 86 181 264 121 11 chr9 97105398 97105489 -20757138 + MIR3 SINE MIR 81 181 -27 621 285 30 33 chr9 97105639 97105909 -20756718 + L1MC4a LINE L1 5664 5932 -1876 1921 161 0 10 chr9 97106260 97106559 -20756068 + AluJo SINE Alu 1 296 -16 1604 177 7 27 chr9 97106802 97107101 -20755526 - AluJb SINE Alu -9 303 11 2490 216 32 66 chr9 97107671 97108356 -20754271 + LTR8 LTR ERV1 30 691 0 230 309 37 0 chr9 97108400 97108481 -20754146 - MIR SINE MIR -70 192 109 210 242 15 30 chr9 97108852 97108918 -20753709 + CT-rich Low_complexity Low_complexity 2 66 0 243 125 0 0 chr9 97109226 97109266 -20753361 + (TG)n Simple_repeat Simple_repeat 1 40 0 238 269 0 0 chr9 97109325 97109377 -20753250 + Tigger3b DNA MER2_type 27 78 -1153 662 198 112 0 chr9 97109378 97109494 -20753133 + AluJ SINE Alu 1 129 -173 539 248 9 0 chr9 97109502 97109607 -20753020 + AluJ SINE Alu 132 237 -75 4013 130 308 21 chr9 97109607 97109889 -20752738 + Tigger3b DNA MER2_type 71 271 -2757 2046 112 38 3 chr9 97109889 97110220 -20752407 + AluSx SINE Alu 1 341 0 4013 130 308 21 chr9 97110220 97110837 -20751790 + Tigger3b DNA MER2_type 271 1231 0 298 122 0 20 chr9 97110837 97110883 -20751744 + MLT2B2 LTR ERVL 471 515 0 884 240 115 105 chr9 97110883 97111525 -20751102 + L2 LINE L2 2665 3281 -32 454 182 0 0 chr9 97111530 97111607 -20751020 + MLT1G1 LTR MaLR 1 77 -518 181 342 43 43 chr9 97112488 97112605 -20750022 - L2 LINE L2 -35 3237 3121 527 323 52 19 chr9 97113195 97113464 -20749163 + LTR33 LTR ERVL 12 289 -232 391 256 85 0 chr9 97113497 97113626 -20749001 + LTR33 LTR ERVL 380 519 -2 414 100 0 0 chr9 97113732 97113792 -20748835 + (TG)n Simple_repeat Simple_repeat 2 61 0 352 349 18 6 chr9 97114551 97114717 -20747910 - MER117 DNA MER1_type 0 197 30 278 286 117 41 chr9 97115072 97115268 -20747359 + MLT1K LTR MaLR 378 588 0 368 323 93 12 chr9 97115319 97115480 -20747147 + MIR SINE MIR 13 186 -76 26 50 0 0 chr9 97115753 97115793 -20746834 + AT_rich Low_complexity Low_complexity 1 40 0 834 225 80 10 chr9 97116484 97116684 -20745943 + MIR SINE MIR 47 260 -2 619 218 102 9 chr9 97116714 97116897 -20745730 - MIR SINE MIR -63 199 6 211 383 52 7 chr9 97117539 97117693 -20744934 - MIR SINE MIR -12 250 90 2166 127 0 0 chr9 97118132 97118432 -20744195 + AluSx SINE Alu 1 300 -12 355 347 47 6 chr9 97118550 97118720 -20743907 + MLT1K LTR MaLR 74 250 -338 837 218 117 10 chr9 97118722 97118919 -20743708 + MIR SINE MIR 6 223 -39 247 287 110 89 chr9 97118957 97119194 -20743433 + MLT1K LTR MaLR 257 498 -90 438 178 44 0 chr9 97119268 97119358 -20743269 - MER5A DNA MER1_type -5 184 91 1187 264 143 16 chr9 97119369 97119809 -20742818 - MLT1D LTR MaLR -5 500 5 474 184 0 0 chr9 97119818 97119894 -20742733 - MER5A DNA MER1_type -113 76 1 218 364 55 27 chr9 97120549 97120659 -20741968 + L2 LINE L2 3145 3257 -15 343 323 132 38 chr9 97121265 97121500 -20741127 - MIR SINE MIR -1 261 5 1673 272 51 46 chr9 97121502 97122194 -20740433 - L1ME3A LINE L1 -9 6161 5467 194 288 168 32 chr9 97122647 97122772 -20739855 + MIR SINE MIR 50 191 -71 207 0 0 0 chr9 97122822 97122845 -20739782 + (TTA)n Simple_repeat Simple_repeat 1 23 0 484 287 30 28 chr9 97122847 97123012 -20739615 - MIR SINE MIR -62 146 5 190 360 132 7 chr9 97123775 97123911 -20738716 - L2 LINE L2 -1 3271 3119 2324 103 0 0 chr9 97124023 97124325 -20738302 - AluSx SINE Alu -10 302 1 364 255 11 32 chr9 97125197 97125291 -20737336 + MIR SINE MIR 1 92 -170 231 271 123 16 chr9 97126486 97126608 -20736019 - L2 LINE L2 0 3272 3138 201 224 0 0 chr9 97126855 97126913 -20735714 + CT-rich Low_complexity Low_complexity 1 58 0 231 133 0 0 chr9 97126947 97126992 -20735635 + (TCCA)n Simple_repeat Simple_repeat 4 48 0 2184 138 0 6 chr9 97127221 97127532 -20735095 - AluSx SINE Alu -3 309 1 243 122 0 0 chr9 97127958 97128007 -20734620 + (TC)n Simple_repeat Simple_repeat 2 50 0 267 31 0 0 chr9 97128007 97128039 -20734588 + (CA)n Simple_repeat Simple_repeat 1 32 0 40 49 0 0 chr9 97128153 97128214 -20734413 + AT_rich Low_complexity Low_complexity 1 61 0 242 215 51 38 chr9 97128386 97128465 -20734162 + Charlie1 DNA MER1_type 2351 2430 -331 191 279 131 0 chr9 97129658 97129719 -20732908 + MIR SINE MIR 78 146 -62 412 58 43 29 chr9 97129847 97129916 -20732711 + L1PA16 LINE L1 6097 6166 0 292 244 89 11 chr9 97130030 97130120 -20732507 + MIR3 SINE MIR 97 193 -15 366 289 11 0 chr9 97130521 97130611 -20732016 + L2 LINE L2 3181 3271 -1 252 361 90 8 chr9 97130657 97130779 -20731848 + L2 LINE L2 3118 3249 -23 204 40 0 0 chr9 97130782 97130807 -20731820 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 455 288 17 45 chr9 97130978 97131155 -20731472 - MIR3 SINE MIR -21 187 16 228 322 95 57 chr9 97131667 97131878 -20730749 + MIR SINE MIR 13 231 -31 1183 191 0 17 chr9 97132065 97132295 -20730332 - AluJo SINE Alu -1 311 86 201 322 53 23 chr9 97132815 97132986 -20729641 - MIR SINE MIR -10 252 77 192 318 174 25 chr9 97133652 97133973 -20728654 + L2 LINE L2 2509 2877 -437 364 235 59 0 chr9 97134275 97134360 -20728267 + MIR3 SINE MIR 96 185 -23 343 245 71 0 chr9 97134568 97134666 -20727961 + MIR3 SINE MIR 66 170 -38 628 236 32 51 chr9 97136093 97136309 -20726318 - MIR SINE MIR -20 242 31 417 190 25 0 chr9 97136558 97136637 -20725990 - MER44D DNA MER2_type 0 705 625 977 162 139 0 chr9 97136638 97136811 -20725816 + MSTA LTR MaLR 1 197 -231 1211 126 107 19 chr9 97136960 97137166 -20725461 + MSTA LTR MaLR 202 425 -3 2837 158 17 2 chr9 97137166 97137635 -20724992 - MER44D DNA MER2_type -73 532 2 198 356 43 17 chr9 97137696 97137811 -20724816 + MIR SINE MIR 21 138 -124 517 296 21 32 chr9 97138023 97138209 -20724418 - MIR SINE MIR -74 188 5 265 315 64 27 chr9 97138339 97138512 -20724115 + MIR SINE MIR 40 218 -44 2128 105 7 0 chr9 97139099 97139376 -20723251 - AluSq SINE Alu -14 299 21 340 276 19 26 chr9 97139389 97139545 -20723082 + (TCTCTG)n Simple_repeat Simple_repeat 2 156 0 1811 164 7 16 chr9 97139773 97140083 -20722544 - AluSx SINE Alu -5 307 1 213 216 20 0 chr9 97140102 97140153 -20722474 + CT-rich Low_complexity Low_complexity 4 55 0 198 118 0 0 chr9 97140670 97140704 -20721923 + (CA)n Simple_repeat Simple_repeat 2 35 0 21 0 0 0 chr9 97141094 97141115 -20721512 + AT_rich Low_complexity Low_complexity 1 21 0 310 319 21 0 chr9 97141117 97141211 -20721416 - MIR SINE MIR -133 129 34 216 355 81 0 chr9 97141716 97141840 -20720787 + MIR3 SINE MIR 53 186 -22 368 299 103 0 chr9 97141977 97142074 -20720553 + MER96 DNA MER1_type? 69 175 0 276 301 78 10 chr9 97142297 97142400 -20720227 + L2 LINE L2 3162 3271 -1 1213 288 27 40 chr9 97142405 97142894 -20719733 + L2 LINE L2 2535 3012 -301 189 0 0 0 chr9 97142971 97142992 -20719635 + (CA)n Simple_repeat Simple_repeat 1 21 0 23 68 0 0 chr9 97143135 97143179 -20719448 + AT_rich Low_complexity Low_complexity 1 44 0 421 106 18 65 chr9 97143220 97143390 -20719237 + (TA)n Simple_repeat Simple_repeat 2 163 0 306 248 56 81 chr9 97143394 97143555 -20719072 + L2 LINE L2 3150 3306 -7 980 220 77 5 chr9 97143644 97143853 -20718774 - MER58A DNA MER1_type 0 224 1 263 244 47 71 chr9 97143853 97143980 -20718647 + L2 LINE L2 3189 3312 -1 982 200 29 33 chr9 97144017 97144227 -20718400 + MER3 DNA MER1_type 1 209 0 201 214 0 86 chr9 97144243 97144313 -20718314 + L2 LINE L2 3000 3063 -209 511 323 36 36 chr9 97144373 97144624 -20718003 - MIR SINE MIR 0 262 12 425 324 6 12 chr9 97144775 97144942 -20717685 - MIR3 SINE MIR -13 195 29 289 384 20 0 chr9 97144976 97145075 -20717552 - L2 LINE L2 -18 3254 3154 437 285 53 69 chr9 97145148 97145339 -20717288 + MIR SINE MIR 1 194 -14 1190 211 30 15 chr9 97145339 97145604 -20717023 - AluJo SINE Alu -1 311 43 320 227 117 8 chr9 97145755 97145883 -20716744 - AluJo SINE Alu -113 189 48 448 200 24 12 chr9 97145897 97145982 -20716645 - AluJ/FLAM SINE Alu -225 87 2 242 174 46 138 chr9 97145985 97146094 -20716533 + MER104 DNA Tc2 35 133 -47 318 240 155 0 chr9 97146108 97146237 -20716390 + MIR SINE MIR 114 262 0 186 357 63 24 chr9 97146252 97146378 -20716249 - L2 LINE L2 -165 3107 2977 306 328 99 20 chr9 97147431 97147632 -20714995 + MIR SINE MIR 46 262 0 390 69 0 0 chr9 97148343 97148401 -20714226 + (TCCA)n Simple_repeat Simple_repeat 1 58 0 299 318 112 0 chr9 97149068 97149175 -20713452 + MIR3 SINE MIR 69 187 -21 210 281 45 67 chr9 97149184 97149273 -20713354 - MIR SINE MIR -59 149 63 2093 152 3 0 chr9 97149307 97149653 -20712974 - AluSx SINE Alu 0 347 1 337 363 26 22 chr9 97149900 97150126 -20712501 - MIR SINE MIR 0 262 36 1014 214 24 15 chr9 97150552 97150758 -20711869 + MER63A DNA MER1_type 1 208 -2 236 333 57 48 chr9 97151911 97152016 -20710611 - L2 LINE L2 -41 3231 3126 445 266 16 23 chr9 97153060 97153188 -20709439 + MER5A DNA MER1_type 14 140 -49 339 321 27 33 chr9 97153134 97153318 -20709309 + MIR3 SINE MIR 5 187 -21 * 216 0 0 0 chr9 97153324 97153348 -20709279 + (TG)n Simple_repeat Simple_repeat 2 25 0 216 0 0 0 chr9 97153748 97153772 -20708855 + (TG)n Simple_repeat Simple_repeat 2 25 0 1789 178 7 3 chr9 97153927 97154213 -20708414 - AluJb SINE Alu -25 287 1 339 247 111 34 chr9 97154586 97154707 -20707920 + MIR SINE MIR 31 159 -72 395 232 0 0 chr9 97154775 97154857 -20707770 + L2 LINE L2 2195 2276 -1038 1934 124 14 24 chr9 97154875 97155166 -20707461 - AluSc SINE Alu -6 303 16 865 191 6 6 chr9 97155166 97155313 -20707314 - MER54A LTR ERVL -7 894 745 3460 172 85 11 chr9 97155363 97155530 -20707097 - MER54B LTR ERVL -112 681 528 282 29 0 0 chr9 97155530 97155565 -20707062 + (TC)n Simple_repeat Simple_repeat 2 36 0 3460 172 85 11 chr9 97155565 97156031 -20706596 - MER54B LTR ERVL -265 528 1 1525 276 97 34 chr9 97156033 97156629 -20705998 + L2 LINE L2 2285 2842 -471 1693 102 12 31 chr9 97156629 97156883 -20705744 + AluSg SINE Alu 1 249 -61 1525 276 97 34 chr9 97156883 97157128 -20705499 + L2 LINE L2 2842 3070 -243 1033 216 20 0 chr9 97157128 97157332 -20705295 + MER3 DNA MER1_type 1 208 -1 1525 276 97 34 chr9 97157332 97157463 -20705164 + L2 LINE L2 3070 3313 0 270 288 167 8 chr9 97157492 97157624 -20705003 - MIR SINE MIR -70 192 40 221 232 18 0 chr9 97157647 97157703 -20704924 + L3 LINE CR1 1518 1574 -3 520 306 65 0 chr9 97158283 97158468 -20704159 + MIR SINE MIR 30 229 -33 482 317 27 11 chr9 97158831 97159017 -20703610 - Charlie8 DNA MER1_type -2141 276 88 303 246 25 25 chr9 97159086 97159208 -20703419 + (CATATA)n Simple_repeat Simple_repeat 6 127 0 273 330 114 0 chr9 97160269 97160445 -20702182 + MIR SINE MIR 6 201 -61 1012 315 70 21 chr9 97160446 97160875 -20701752 - LTR16A LTR ERVL 0 450 1 1913 169 70 0 chr9 97161037 97161368 -20701259 + MLT1A1 LTR MaLR 12 365 0 390 295 129 7 chr9 97161484 97161623 -20701004 - MIR SINE MIR -59 203 48 279 309 63 24 chr9 97161780 97161906 -20700721 + L2 LINE L2 3141 3271 -1 196 367 128 9 chr9 97162672 97162781 -20699846 - L2 LINE L2 -18 3254 3133 180 0 0 0 chr9 97163266 97163286 -20699341 + (TA)n Simple_repeat Simple_repeat 2 21 0 2472 154 0 13 chr9 97164396 97164786 -20697841 + MLT1B LTR MaLR 1 385 -5 203 0 0 36 chr9 97164808 97164836 -20697791 + (TTG)n Simple_repeat Simple_repeat 1 27 0 1561 159 11 36 chr9 97164841 97165117 -20697510 - AluJb SINE Alu -43 269 1 302 219 21 21 chr9 97165196 97165292 -20697335 - Charlie4 DNA MER1_type -53 1908 1813 621 191 104 78 chr9 97165714 97165944 -20696683 - MER106A DNA MER1_type 0 236 1 230 326 80 36 chr9 97165947 97166085 -20696542 - MIR3 SINE MIR -51 157 14 199 315 112 0 chr9 97166085 97166174 -20696453 - MIR SINE MIR -76 132 34 629 116 45 0 chr9 97166391 97166546 -20696081 + (TA)n Simple_repeat Simple_repeat 1 162 0 186 115 58 0 chr9 97166575 97166627 -20696000 + (TA)n Simple_repeat Simple_repeat 1 55 0 327 324 52 29 chr9 97167304 97167440 -20695187 + MIR SINE MIR 54 192 -70 185 229 125 0 chr9 97167942 97167990 -20694637 + L2 LINE L2 3255 3308 -5 281 319 80 31 chr9 97168405 97168568 -20694059 + MIR SINE MIR 20 190 -72 471 262 7 55 chr9 97168657 97168802 -20693825 - MIR SINE MIR -99 163 26 331 280 63 21 chr9 97169538 97169681 -20692946 + MIR SINE MIR 20 168 -94 492 18 0 0 chr9 97169806 97169863 -20692764 + (TG)n Simple_repeat Simple_repeat 2 58 0 228 218 18 0 chr9 97170577 97170632 -20691995 + L2 LINE L2 3217 3272 0 1553 198 0 0 chr9 97170753 97171011 -20691616 - AluJo SINE Alu -54 258 1 260 289 185 6 chr9 97171405 97171578 -20691049 + MIR SINE MIR 3 206 -56 353 244 0 0 chr9 97171615 97171693 -20690934 + MIR SINE MIR 185 262 0 216 86 0 0 chr9 97172246 97172281 -20690346 + (A)n Simple_repeat Simple_repeat 1 35 0 584 294 141 32 chr9 97173065 97173504 -20689123 + L2 LINE L2 2827 3313 0 208 311 0 0 chr9 97173510 97173571 -20689056 + MIR SINE MIR 176 236 -26 259 314 48 89 chr9 97174263 97174511 -20688116 - L2 LINE L2 -19 3253 3016 2262 112 36 20 chr9 97174567 97174925 -20687702 + THE1B LTR MaLR 1 364 0 1963 106 102 0 chr9 97175585 97175868 -20686759 - AluSx SINE Alu 0 312 1 180 111 0 0 chr9 97175896 97175923 -20686704 + (T)n Simple_repeat Simple_repeat 1 27 0 204 280 86 20 chr9 97176013 97176186 -20686441 - MIR SINE MIR -15 247 9 206 200 263 12 chr9 97176512 97176592 -20686035 - L2 LINE L2 -2 3270 3171 498 273 32 7 chr9 97176663 97176817 -20685810 - MIR SINE MIR -90 172 15 229 336 37 22 chr9 97176975 97177109 -20685518 - MIR SINE MIR -112 150 15 186 148 56 56 chr9 97177286 97177340 -20685287 + L2 LINE L2 2919 2972 -341 442 302 30 24 chr9 97177677 97177846 -20684781 - MIR SINE MIR -73 189 20 180 250 0 0 chr9 97177903 97177951 -20684676 + L2 LINE L2 3225 3272 0 357 344 39 0 chr9 97178682 97178810 -20683817 - MIR3 SINE MIR -14 194 62 335 295 32 83 chr9 97178866 97179083 -20683544 + MIR SINE MIR 57 262 0 226 229 21 0 chr9 97179472 97179520 -20683107 + GA-rich Low_complexity Low_complexity 1 49 0 201 324 20 29 chr9 97179811 97179913 -20682714 - MIR SINE MIR -67 141 41 197 439 47 0 chr9 97181256 97181363 -20681264 - L2 LINE L2 -20 3252 3141 22 56 0 0 chr9 97181377 97181413 -20681214 + AT_rich Low_complexity Low_complexity 1 36 0 276 291 91 62 chr9 97181498 97181851 -20680776 - L2 LINE L2 -336 2977 2614 205 308 66 11 chr9 97183038 97183129 -20679498 - L3 LINE CR1 -75 1502 1407 528 270 37 0 chr9 97183169 97183332 -20679295 - MIR SINE MIR -13 249 81 219 334 58 34 chr9 97183499 97183736 -20678891 + MIR SINE MIR 15 256 -6 281 250 0 40 chr9 97184414 97184490 -20678137 - MER5B DNA MER1_type -31 147 75 226 317 37 0 chr9 97185384 97185466 -20677161 + MIR SINE MIR 108 192 -70 311 297 146 42 chr9 97185799 97185991 -20676636 - MIR SINE MIR 0 262 51 1749 259 23 40 chr9 97186173 97186741 -20675886 + MER74A LTR ERVL 1 558 0 426 369 0 0 chr9 97186860 97187017 -20675610 - L2 LINE L2 0 3272 3116 483 290 51 23 chr9 97187217 97187393 -20675234 - MIR SINE MIR -76 186 6 201 283 150 25 chr9 97187373 97187493 -20675134 + MIR3 SINE MIR 65 199 -9 * 254 222 93 28 chr9 97187910 97188018 -20674609 + L3 LINE CR1 979 1093 -484 366 287 43 0 chr9 97188136 97188251 -20674376 + L1ME3 LINE L1 5947 6066 -96 467 239 24 84 chr9 97188263 97188430 -20674197 + L1MA10 LINE L1 6139 6295 -39 307 257 59 30 chr9 97188540 97188641 -20673986 + L1ME LINE L1 5499 5602 -519 3114 81 0 0 chr9 97188997 97189405 -20673222 + L1PA8 LINE L1 5762 6169 -3 442 286 94 12 chr9 97190139 97190247 -20672380 + MIR SINE MIR 2 130 -132 2331 103 0 0 chr9 97190247 97190549 -20672078 - AluSx SINE Alu -2 310 9 442 286 94 12 chr9 97190549 97190611 -20672016 + MIR SINE MIR 130 186 -76 191 200 50 0 chr9 97190683 97190723 -20671904 - L2 LINE L2 -8 3264 3223 215 355 73 33 chr9 97191010 97191283 -20671344 + L2 LINE L2 2198 2481 -833 320 267 42 42 chr9 97191774 97191894 -20670733 + L2 LINE L2 3151 3270 -2 31 26 0 0 chr9 97192422 97192460 -20670167 + AT_rich Low_complexity Low_complexity 1 38 0 2203 139 0 0 chr9 97192659 97192969 -20669658 - AluSx SINE Alu -2 310 1 2308 113 3 0 chr9 97193425 97193736 -20668891 + AluSx SINE Alu 1 312 0 321 293 65 8 chr9 97193791 97193914 -20668713 + MIR SINE MIR 120 249 -13 199 250 0 0 chr9 97194454 97194506 -20668121 - MIR SINE MIR -6 256 205 278 271 78 54 chr9 97194526 97194655 -20667972 - L2 LINE L2 0 3313 3182 273 297 152 14 chr9 97194655 97194800 -20667827 - MIR SINE MIR -65 197 33 236 322 71 60 chr9 97194868 97195051 -20667576 + MIR SINE MIR 21 205 -57 585 42 0 0 chr9 97195754 97195826 -20666801 + (TATG)n Simple_repeat Simple_repeat 3 74 0 2018 132 0 0 chr9 97195826 97196098 -20666529 - AluSx SINE Alu -38 274 3 43847 32 23 1 chr9 97196758 97202777 -20659850 - L1PA2 LINE L1 0 6155 1 222 253 111 30 chr9 97202790 97202889 -20659738 - MIR SINE MIR -152 110 4 183 42 0 0 chr9 97203459 97203483 -20659144 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 183 245 181 53 chr9 97203492 97203586 -20659041 - MIR SINE MIR -80 128 23 232 354 55 24 chr9 97204280 97204407 -20658220 + L2 LINE L2 3141 3271 -1 180 0 0 0 chr9 97204989 97205009 -20657618 + (GGA)n Simple_repeat Simple_repeat 2 21 0 199 188 14 29 chr9 97205499 97205568 -20657059 + (TATATG)n Simple_repeat Simple_repeat 3 70 0 386 324 56 7 chr9 97205594 97205736 -20656891 - MIR SINE MIR -110 152 4 231 114 0 0 chr9 97206227 97206262 -20656365 + (AGGGGG)n Simple_repeat Simple_repeat 5 39 0 202 406 0 0 chr9 97206395 97206464 -20656163 + MIR SINE MIR 31 99 -109 400 283 116 23 chr9 97206474 97206647 -20655980 + MIR SINE MIR 18 206 -56 291 298 78 74 chr9 97206747 97207056 -20655571 - L2 LINE L2 -22 3250 2941 198 250 0 18 chr9 97207071 97207127 -20655500 + L2 LINE L2 3258 3312 -1 228 277 0 0 chr9 97207127 97207174 -20655453 + polypurine Low_complexity Low_complexity 2 48 0 462 305 71 18 chr9 97207215 97207441 -20655186 - L2 LINE L2 -522 2792 2555 327 318 23 45 chr9 97207974 97208150 -20654477 + MIR SINE MIR 21 192 -70 2026 155 0 0 chr9 97208206 97208516 -20654111 + AluSx SINE Alu 1 310 -2 333 351 55 49 chr9 97208545 97208910 -20653717 - L3 LINE CR1 -15 1562 1196 307 300 11 0 chr9 97208909 97208999 -20653628 - MIR3 SINE MIR -14 194 104 * 2198 119 3 3 chr9 97209465 97209776 -20652851 - AluSx SINE Alu -1 311 1 1641 193 0 0 chr9 97209814 97210094 -20652533 + AluJb SINE Alu 1 280 -32 288 295 62 27 chr9 97210139 97210251 -20652376 + MER5B DNA MER1_type 60 175 -3 240 306 40 29 chr9 97210600 97210773 -20651854 - MIR SINE MIR -11 251 77 356 284 0 0 chr9 97211142 97211237 -20651390 - L1ME LINE L1 -336 5785 5691 2195 199 70 70 chr9 97212245 97212898 -20649729 + MLT1E1 LTR MaLR 2 654 0 317 311 19 0 chr9 97213235 97213341 -20649286 + L2 LINE L2 2613 2720 -594 1868 121 8 4 chr9 97213373 97213637 -20648990 + AluSx SINE Alu 45 309 -3 330 273 99 0 chr9 97214149 97214270 -20648357 - MIR SINE MIR -73 189 57 181 349 125 20 chr9 97215264 97215416 -20647211 + MIR SINE MIR 26 193 -69 775 261 0 37 chr9 97216111 97216329 -20646298 + MER63A DNA MER1_type 1 210 0 265 260 13 0 chr9 97216615 97216692 -20645935 - MIR SINE MIR -15 247 170 320 322 104 5 chr9 97216696 97216898 -20645729 + MIR SINE MIR 27 248 -14 204 286 143 0 chr9 97217017 97217101 -20645526 - MIR SINE MIR -68 140 45 2276 101 0 10 chr9 97217102 97217408 -20645219 + AluSc SINE Alu 1 303 -6 1869 162 23 10 chr9 97217999 97218337 -20644290 - AluJb SINE Alu 0 312 1 405 250 15 83 chr9 97218463 97218667 -20643960 - MIR SINE MIR -40 222 33 467 184 26 53 chr9 97218715 97218829 -20643798 - L1MC4 LINE L1 -10 8032 7922 203 309 48 24 chr9 97218846 97218930 -20643697 + MIR3 SINE MIR 87 172 -36 375 258 39 8 chr9 97219997 97220125 -20642502 - MIR3 SINE MIR -62 146 15 2827 119 2 0 chr9 97220345 97220747 -20641880 - L1PB1 LINE L1 -3 6148 5746 860 282 23 9 chr9 97220877 97221097 -20641530 + MER58A DNA MER1_type 1 223 -1 191 296 128 40 chr9 97221480 97221605 -20641022 - MIR SINE MIR -90 172 37 200 35 35 0 chr9 97222070 97222099 -20640528 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 606 311 102 25 chr9 97222099 97222809 -20639818 - L2 LINE L2 -13 3300 2546 256 301 171 0 chr9 97222843 97222966 -20639661 - MIR SINE MIR -74 188 45 319 303 0 0 chr9 97223179 97223278 -20639349 - MIR SINE MIR -69 139 41 195 294 15 44 chr9 97223910 97223978 -20638649 - MIR3 SINE MIR -30 178 113 228 288 59 17 chr9 97224086 97224204 -20638423 + MIR SINE MIR 125 247 -15 387 205 48 0 chr9 97224445 97224528 -20638099 + L2 LINE L2 3227 3313 0 259 355 157 3 chr9 97225179 97225472 -20637155 - L3 LINE CR1 -94 1483 1146 219 273 0 0 chr9 97225520 97225575 -20637052 + (TTA)n Simple_repeat Simple_repeat 1 55 0 530 309 83 14 chr9 97225582 97225799 -20636828 - MIR SINE MIR -23 239 8 189 299 45 0 chr9 97226396 97226463 -20636164 - MIR SINE MIR -67 195 126 1441 140 0 23 chr9 97226649 97226870 -20635757 - AluSg/x SINE Alu -13 299 84 320 306 132 0 chr9 97227200 97227321 -20635306 - MIR SINE MIR -3 259 123 213 315 20 67 chr9 97228241 97228390 -20634237 - MIR3 SINE MIR -62 146 5 322 288 230 16 chr9 97228944 97229135 -20633492 - MIR SINE MIR -14 248 17 390 260 190 40 chr9 97229698 97229844 -20632783 + MIR SINE MIR 20 205 -57 2300 96 17 0 chr9 97229844 97230145 -20632482 + AluY SINE Alu 1 306 -5 390 260 190 40 chr9 97230145 97230198 -20632429 + MIR SINE MIR 205 249 -13 433 274 126 40 chr9 97230370 97230545 -20632082 - MIR SINE MIR -20 242 53 341 251 49 68 chr9 97230556 97230719 -20631908 + L3 LINE CR1 1097 1256 -321 281 256 31 157 chr9 97230794 97230861 -20631766 - MIR SINE MIR -48 214 140 1844 163 0 10 chr9 97230861 97231149 -20631478 + AluJo SINE Alu 7 291 -21 281 256 31 157 chr9 97231149 97231304 -20631323 - MIR SINE MIR -122 140 20 218 178 44 0 chr9 97231699 97231744 -20630883 + A-rich Low_complexity Low_complexity 4 50 0 298 322 16 25 chr9 97231941 97232062 -20630565 + MIR3 SINE MIR 11 130 -78 249 153 237 0 chr9 97232079 97232138 -20630489 - L2 LINE L2 0 3313 3241 2186 134 33 30 chr9 97232481 97232817 -20629810 - MER1B DNA MER1_type 0 337 1 304 213 12 62 chr9 97232886 97232966 -20629661 - L2 LINE L2 0 3313 3238 757 168 0 0 chr9 97233021 97233128 -20629499 + AluJb SINE Alu 2 108 -204 1320 251 94 38 chr9 97233495 97233974 -20628653 + MLT1F1 LTR MaLR 61 566 -1 238 303 83 9 chr9 97234062 97234171 -20628456 - L2 LINE L2 -1 3271 3155 184 358 124 0 chr9 97234610 97234747 -20627880 + MIR SINE MIR 109 262 0 1200 65 0 0 chr9 97235650 97235789 -20626838 - AluY SINE Alu -171 140 2 1835 146 6 50 chr9 97235789 97236112 -20626515 - AluJo SINE Alu -3 309 1 417 292 15 8 chr9 97236683 97236813 -20625814 - L2 LINE L2 0 3313 3183 232 367 0 18 chr9 97236870 97236979 -20625648 - MIR SINE MIR -109 153 47 242 309 0 31 chr9 97237575 97237672 -20624955 - MIR SINE MIR -82 126 33 283 256 26 43 chr9 97238137 97238254 -20624373 + L1ME4a LINE L1 5920 6034 -87 1250 280 64 84 chr9 97238596 97239203 -20623424 + MLT1G LTR MaLR 1 590 0 429 265 35 15 chr9 97239416 97239560 -20623067 - MIR SINE MIR -63 145 49 1668 149 107 7 chr9 97239770 97240051 -20622576 - AluSx SINE Alu -3 309 1 22 35 0 0 chr9 97240095 97240124 -20622503 + AT_rich Low_complexity Low_complexity 1 29 0 366 23 0 0 chr9 97240323 97240366 -20622261 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 209 307 20 10 chr9 97240436 97240537 -20622090 + (TA)n Simple_repeat Simple_repeat 1 102 0 721 254 52 76 chr9 97240646 97241067 -20621560 - L1ME4a LINE L1 -254 5867 5457 736 343 92 19 chr9 97241114 97241528 -20621099 - L3 LINE CR1 -454 1123 680 199 363 90 17 chr9 97241555 97241789 -20620838 - MIR SINE MIR -9 253 3 297 0 0 0 chr9 97241991 97242024 -20620603 + (CA)n Simple_repeat Simple_repeat 2 34 0 335 234 127 44 chr9 97242025 97242183 -20620444 - L2 LINE L2 -1 3312 3142 452 319 38 0 chr9 97242286 97242443 -20620184 - L3 LINE CR1 -1118 459 297 2134 105 14 3 chr9 97242555 97242840 -20619787 + AluSx SINE Alu 1 288 -24 286 0 91 0 chr9 97242888 97242932 -20619695 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 197 315 45 54 chr9 97242952 97243063 -20619564 - L3 LINE CR1 -1426 151 42 598 306 46 32 chr9 97243697 97243981 -20618646 + L1ME1 LINE L1 5483 5770 -351 2196 293 74 33 chr9 97244119 97245321 -20617306 + L1ME LINE L1 6 1146 -4832 2139 214 46 27 chr9 97245343 97246020 -20616607 + L1M4 LINE L1 4129 4818 -1328 754 332 54 25 chr9 97246164 97246571 -20616056 - L2 LINE L2 -555 2759 2341 27 0 0 0 chr9 97246811 97246838 -20615789 + AT_rich Low_complexity Low_complexity 1 27 0 253 246 14 29 chr9 97247203 97247272 -20615355 - L2 LINE L2 0 3272 3205 227 108 27 0 chr9 97248045 97248082 -20614545 + L1M4 LINE L1 5575 5612 -572 2452 150 6 70 chr9 97248087 97248508 -20614119 + L1MB8 LINE L1 5569 5955 -223 1640 154 68 0 chr9 97248508 97248788 -20613839 + AluSx SINE Alu 1 299 -13 2452 150 6 70 chr9 97248788 97248866 -20613761 + L1MB8 LINE L1 5955 6036 -142 2213 102 0 0 chr9 97248866 97249180 -20613447 + AluSq SINE Alu 1 314 0 1034 259 88 16 chr9 97249182 97249502 -20613125 + L1ME1 LINE L1 5821 6163 -3 21 0 0 0 chr9 97249659 97249680 -20612947 + AT_rich Low_complexity Low_complexity 1 21 0 1252 284 67 36 chr9 97250110 97250635 -20611992 + MLT1H1 LTR MaLR 1 541 -14 320 323 0 39 chr9 97250649 97250724 -20611903 + MIR SINE MIR 85 155 -107 2129 121 0 29 chr9 97250724 97251037 -20611590 + AluSx SINE Alu 1 304 -8 320 323 0 39 chr9 97251037 97251088 -20611539 + MIR SINE MIR 155 206 -56 242 291 81 23 chr9 97251144 97251230 -20611397 - L2 LINE L2 0 3272 3182 2389 76 0 0 chr9 97251236 97251527 -20611100 + AluY SINE Alu 1 291 -20 237 302 93 22 chr9 97252638 97252777 -20609850 - MIR SINE MIR -9 253 105 644 330 51 81 chr9 97253318 97254021 -20608606 - L2 LINE L2 -19 3253 2561 275 270 9 43 chr9 97254290 97254405 -20608222 + A-rich Low_complexity Low_complexity 5 115 0 291 122 0 0 chr9 97255130 97255179 -20607448 + (TTCA)n Simple_repeat Simple_repeat 1 49 0 942 191 62 122 chr9 97255230 97255566 -20607061 - MLT1B LTR MaLR -5 385 70 1282 212 39 67 chr9 97255569 97255927 -20606700 + MLT1B LTR MaLR 5 352 -38 580 153 0 0 chr9 97255928 97256013 -20606614 + Tigger4(Zombi) DNA MER2_type 1 85 -2646 753 132 53 0 chr9 97256028 97256142 -20606485 - MER30 DNA MER1_type 0 230 111 480 301 50 46 chr9 97256166 97256298 -20606329 - L2 LINE L2 -830 2484 2354 2162 137 0 3 chr9 97256298 97256611 -20606016 - AluSx SINE Alu 0 312 1 923 131 0 21 chr9 97256612 97256757 -20605870 - L1PA15 LINE L1 -4 6161 6020 480 301 50 46 chr9 97256757 97256861 -20605766 - L2 LINE L2 -959 2355 2245 772 298 161 28 chr9 97256974 97257434 -20605193 + LTR33 LTR ERVL 1 521 0 276 293 18 22 chr9 97258059 97258289 -20604338 + A-rich Low_complexity Low_complexity 3 305 0 745 169 0 0 chr9 97258294 97258412 -20604215 + L1PB1 LINE L1 6008 6125 -26 1745 118 8 0 chr9 97258422 97258676 -20603951 + L1MA5 LINE L1 6037 6292 -8 1381 143 15 0 chr9 97258864 97259067 -20603560 + AluSg/x SINE Alu 77 282 -27 234 0 0 0 chr9 97259067 97259093 -20603534 + (CA)n Simple_repeat Simple_repeat 2 27 0 416 384 33 4 chr9 97259243 97259485 -20603142 - MIR SINE MIR -11 251 3 309 350 134 11 chr9 97259816 97260002 -20602625 + MIR SINE MIR 54 262 0 281 281 148 30 chr9 97260109 97260244 -20602383 - MIR3 SINE MIR -38 170 20 1529 220 38 35 chr9 97260273 97260619 -20602008 + MLT2D LTR ERVL 3 349 -65 2290 122 0 0 chr9 97260640 97260944 -20601683 - AluSg SINE Alu -6 304 1 354 61 0 0 chr9 97261032 97261081 -20601546 + (TG)n Simple_repeat Simple_repeat 2 50 0 281 178 0 0 chr9 97261082 97261127 -20601500 + MLT2D LTR ERVL 420 464 0 193 283 0 0 chr9 97261820 97261866 -20600761 + MIR3 SINE MIR 157 202 -6 425 296 73 6 chr9 97262151 97262330 -20600297 + MIR SINE MIR 50 240 -22 1510 189 10 37 chr9 97262331 97262627 -20600000 - AluJo SINE Alu -24 288 1 580 236 18 0 chr9 97262672 97262782 -20599845 - FLAM_A SINE Alu -26 116 5 263 296 193 0 chr9 97263026 97263161 -20599466 - L2 LINE L2 -5 3267 3107 449 289 44 77 chr9 97263579 97263829 -20598798 + MIR SINE MIR 17 249 -13 216 283 0 0 chr9 97264026 97264079 -20598548 + L2 LINE L2 765 817 -2497 575 281 20 30 chr9 97264671 97264870 -20597757 + MLT1H LTR MaLR 94 290 -259 228 228 0 18 chr9 97265028 97265085 -20597542 + MLT1H LTR MaLR 471 526 -16 309 268 54 36 chr9 97265111 97265223 -20597404 - MIR SINE MIR -87 175 62 241 278 111 0 chr9 97266056 97266146 -20596481 + MIR SINE MIR 25 124 -84 23 0 0 0 chr9 97266328 97266351 -20596276 + AT_rich Low_complexity Low_complexity 1 23 0 235 275 9 55 chr9 97266357 97266466 -20596161 + MIR SINE MIR 51 154 -108 230 49 0 49 chr9 97267113 97267154 -20595473 + (CAGAGA)n Simple_repeat Simple_repeat 4 42 0 271 327 97 30 chr9 97267521 97267686 -20594941 + L3 LINE CR1 1010 1185 -392 327 355 18 6 chr9 97267835 97268004 -20594623 - MIR SINE MIR -1 261 91 1019 197 22 0 chr9 97268006 97268184 -20594443 - MER20 DNA MER1_type 0 219 38 1857 321 28 8 chr9 97269486 97270064 -20592563 + HERV16 LTR ERVL 2567 3164 -2013 1945 163 121 16 chr9 97270064 97270451 -20592176 - MSTA LTR MaLR 0 428 1 1857 321 28 8 chr9 97270451 97270568 -20592059 + HERV16 LTR ERVL 3164 3277 -1900 394 262 10 10 chr9 97270741 97270844 -20591783 + HERV16 LTR ERVL 3198 3300 -1696 707 234 132 0 chr9 97271480 97271647 -20590980 - MER5A DNA MER1_type 0 189 1 565 304 73 14 chr9 97271753 97271973 -20590654 + MIR SINE MIR 17 249 -13 234 287 0 46 chr9 97272332 97272419 -20590208 + L2 LINE L2 3223 3305 -8 278 316 143 15 chr9 97272432 97272565 -20590062 + MIR3 SINE MIR 34 183 -25 466 268 106 2 chr9 97272569 97272722 -20589905 + MIR3 SINE MIR 2 151 -57 546 189 0 0 chr9 97273145 97273240 -20589387 + AluJb SINE Alu 210 304 -8 395 307 57 7 chr9 97273259 97273399 -20589228 + MIR SINE MIR 60 206 -56 295 311 107 25 chr9 97274725 97274847 -20587780 + MIR SINE MIR 16 147 -61 275 443 0 0 chr9 97275204 97275317 -20587310 + L2 LINE L2 3136 3248 -24 2610 196 22 114 chr9 97275904 97276086 -20586541 - LTR8 LTR ERV1 0 691 494 2546 62 0 0 chr9 97276086 97276393 -20586234 - AluY SINE Alu -4 307 1 2610 196 22 114 chr9 97276393 97276590 -20586037 - LTR8 LTR ERV1 -197 494 280 1734 94 5 0 chr9 97276590 97276814 -20585813 + AluSc SINE Alu 84 308 -1 2610 196 22 114 chr9 97276814 97277111 -20585516 - LTR8 LTR ERV1 -411 280 89 2069 142 19 48 chr9 97277111 97277484 -20585143 - THE1B LTR MaLR -2 362 1 2610 196 22 114 chr9 97277484 97277566 -20585061 - LTR8 LTR ERV1 -602 89 1 259 274 68 87 chr9 97277951 97278421 -20584206 - L1M4 LINE L1 -3480 2666 2206 1791 186 6 6 chr9 97278438 97278749 -20583878 + AluJb SINE Alu 1 311 -1 207 100 0 0 chr9 97279154 97279184 -20583443 + (CATA)n Simple_repeat Simple_repeat 2 31 0 4566 157 87 5 chr9 97279552 97280379 -20582248 + MER4D LTR ERV1 1 895 -8 277 265 77 34 chr9 97280538 97280655 -20581972 + MLT1H LTR MaLR 158 279 -270 * 444 238 37 67 chr9 97280650 97280814 -20581813 + MLT1H LTR MaLR 384 542 -7 410 225 7 116 chr9 97281552 97281621 -20581006 - MIR3 SINE MIR -10 198 150 459 286 95 25 chr9 97281621 97281862 -20580765 - MIR SINE MIR 0 262 5 410 225 7 116 chr9 97281862 97281930 -20580697 - MIR3 SINE MIR -58 150 76 252 305 49 0 chr9 97281940 97282022 -20580605 - L2 LINE L2 -1 3271 3186 270 0 0 0 chr9 97282680 97282710 -20579917 + (TA)n Simple_repeat Simple_repeat 1 30 0 * 396 0 0 0 chr9 97282709 97282753 -20579874 + (CA)n Simple_repeat Simple_repeat 2 45 0 663 288 27 17 chr9 97283576 97283820 -20578807 + MIR SINE MIR 9 254 -8 231 222 0 0 chr9 97284494 97284548 -20578079 + (TAA)n Simple_repeat Simple_repeat 1 54 0 215 326 42 0 chr9 97284585 97284680 -20577947 - MIR SINE MIR -31 231 133 195 313 193 27 chr9 97284977 97285127 -20577500 - L2 LINE L2 -574 2740 2566 332 321 133 5 chr9 97285209 97285405 -20577222 - MIR SINE MIR -15 247 27 298 337 109 0 chr9 97287845 97288020 -20574607 - MIR SINE MIR -18 244 51 245 318 0 0 chr9 97288306 97288372 -20574255 - MLT1I LTR MaLR -273 136 71 188 269 90 13 chr9 97288561 97288639 -20573988 + MIR SINE MIR 82 165 -97 321 269 76 41 chr9 97288789 97288960 -20573667 + L2 LINE L2 3136 3312 -1 273 57 0 0 chr9 97289168 97289203 -20573424 + (CA)n Simple_repeat Simple_repeat 2 36 0 237 271 0 0 chr9 97289398 97289446 -20573181 + (TGG)n Simple_repeat Simple_repeat 2 49 0 2040 147 0 7 chr9 97289617 97289917 -20572710 - AluSx SINE Alu -8 304 7 823 223 59 47 chr9 97290747 97291003 -20571624 + MIR SINE MIR 3 261 -1 460 288 36 0 chr9 97292114 97292225 -20570402 + L2 LINE L2 3158 3272 0 181 207 46 115 chr9 97292374 97292461 -20570166 - MIR3 SINE MIR -17 191 111 547 317 36 20 chr9 97293066 97293315 -20569312 - MIR SINE MIR -2 260 8 318 304 40 16 chr9 97293530 97293655 -20568972 - MIR SINE MIR -100 162 35 290 316 35 58 chr9 97293959 97294133 -20568494 + MIR SINE MIR 79 248 -14 251 383 21 37 chr9 97294542 97294730 -20567897 + L2 LINE L2 2635 2819 -495 181 355 33 33 chr9 97294778 97294930 -20567697 + L2 LINE L2 2903 3054 -218 195 309 0 48 chr9 97296271 97296355 -20566272 + MIR SINE MIR 104 183 -79 391 291 70 50 chr9 97297158 97297357 -20565270 + MIR SINE MIR 59 261 -1 186 167 0 0 chr9 97297414 97297450 -20565177 + A-rich Low_complexity Low_complexity 1 36 0 187 200 0 25 chr9 97297897 97297937 -20564690 - L2 LINE L2 -4 3268 3230 302 271 172 59 chr9 97298179 97298382 -20564245 + MIR SINE MIR 21 246 -16 196 138 0 0 chr9 97298395 97298424 -20564203 + L2 LINE L2 3266 3294 -19 1104 274 61 20 chr9 97298602 97298996 -20563631 - L2 LINE L2 0 3313 2904 188 0 74 0 chr9 97299386 97299413 -20563214 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 459 291 133 25 chr9 97299525 97299721 -20562906 + MIR SINE MIR 20 236 -26 2369 116 40 32 chr9 97299727 97300099 -20562528 + THE1C LTR MaLR 1 375 0 700 275 45 21 chr9 97300119 97300406 -20562221 + L1ME3 LINE L1 5757 6050 -112 580 264 6 45 chr9 97300412 97300590 -20562037 + MER3 DNA MER1_type 5 128 -81 309 176 59 35 chr9 97300608 97300693 -20561934 + L1ME3 LINE L1 6046 6132 -30 198 301 26 72 chr9 97300751 97300904 -20561723 - MIR SINE MIR -56 206 61 377 282 17 43 chr9 97300973 97301090 -20561537 - L2 LINE L2 -5 3308 3195 22 56 0 0 chr9 97301858 97301894 -20560733 + AT_rich Low_complexity Low_complexity 1 36 0 432 259 62 40 chr9 97301907 97302131 -20560496 + L1MC/D LINE L1 2956 3184 -2962 464 0 0 18 chr9 97302353 97302410 -20560217 + (TAGA)n Simple_repeat Simple_repeat 1 56 0 324 291 18 9 chr9 97302520 97302630 -20559997 + L1MC/D LINE L1 3364 3474 -2672 319 277 54 23 chr9 97302890 97303020 -20559607 + L1MC/D LINE L1 3853 3986 -2160 286 333 126 25 chr9 97303259 97303893 -20558734 + L1MC/D LINE L1 4204 4901 -1245 394 251 90 72 chr9 97303922 97304201 -20558426 + L1MC/D LINE L1 4972 5255 -891 307 242 152 20 chr9 97304232 97304476 -20558151 + L1MC/D LINE L1 5266 5541 -2267 1491 206 35 3 chr9 97304881 97305167 -20557460 + AluJo SINE Alu 2 296 -16 474 289 95 11 chr9 97305449 97305639 -20556988 - MIR SINE MIR -30 232 27 390 363 35 32 chr9 97306008 97306292 -20556335 + L2 LINE L2 2616 2900 -414 406 288 24 8 chr9 97306468 97306593 -20556034 + L2 LINE L2 3186 3312 -1 348 281 37 37 chr9 97307324 97307459 -20555168 - L2 LINE L2 0 3313 3179 192 222 11 22 chr9 97307462 97307552 -20555075 + (TA)n Simple_repeat Simple_repeat 1 89 0 229 197 148 0 chr9 97307562 97307623 -20555004 - L1MC3 LINE L1 -1135 6650 6581 239 344 110 7 chr9 97308138 97308292 -20554335 - MIR3 SINE MIR -14 194 25 200 285 134 77 chr9 97308508 97308754 -20553873 + L2 LINE L2 2831 3090 -182 237 214 0 0 chr9 97308798 97308840 -20553787 - MIR SINE MIR -12 250 209 507 261 36 0 chr9 97309440 97309578 -20553049 - MIR SINE MIR -63 199 57 376 320 141 26 chr9 97309799 97310033 -20552594 + MIR SINE MIR 1 261 -1 240 100 0 0 chr9 97310544 97310584 -20552043 + (CA)n Simple_repeat Simple_repeat 2 41 0 230 362 96 69 chr9 97311044 97311123 -20551504 + L2 LINE L2 2858 2933 -339 388 121 0 15 chr9 97311123 97311189 -20551438 + L1MA7 LINE L1 6227 6291 0 230 362 96 69 chr9 97311189 97311327 -20551300 + L2 LINE L2 2933 3081 -191 678 235 21 119 chr9 97311610 97311895 -20550732 - MIR SINE MIR -1 261 5 315 261 0 0 chr9 97313035 97313104 -20549523 - MIR3 SINE MIR -53 155 87 260 266 45 78 chr9 97313104 97313258 -20549369 - MIR SINE MIR -26 236 88 415 368 14 9 chr9 97314230 97314450 -20548177 + MIR SINE MIR 12 232 -30 2327 63 0 3 chr9 97314494 97314823 -20547804 + AluY SINE Alu 1 328 0 309 263 32 32 chr9 97314927 97315022 -20547605 - L2 LINE L2 -4 3309 3215 2121 121 3 0 chr9 97315078 97315376 -20547251 + AluSg SINE Alu 1 299 -11 361 205 36 33 chr9 97315703 97315826 -20546801 + MIR3 SINE MIR 67 190 -18 262 328 46 84 chr9 97316509 97316640 -20545987 - MIR SINE MIR -66 142 16 569 88 12 12 chr9 97317406 97317486 -20545141 + MADE1 DNA Mariner 1 80 0 291 354 96 42 chr9 97317495 97317828 -20544799 - L2 LINE L2 -86 3186 2836 299 266 28 37 chr9 97317880 97317989 -20544638 - MIR SINE MIR -96 166 59 632 313 55 55 chr9 97318004 97318368 -20544259 + L2 LINE L2 2946 3309 -4 256 331 42 28 chr9 97318472 97318614 -20544013 - L2 LINE L2 -580 2734 2591 273 354 26 0 chr9 97319234 97319347 -20543280 - L2 LINE L2 -9 3263 3148 404 269 146 12 chr9 97319409 97319580 -20543047 - MIR SINE MIR -20 242 49 475 233 116 44 chr9 97320811 97321046 -20541581 + MIR SINE MIR 17 258 -4 242 244 73 37 chr9 97321054 97321136 -20541491 - MIR SINE MIR 0 262 178 250 215 8 31 chr9 97321538 97321668 -20540959 + (CTATT)n Simple_repeat Simple_repeat 4 130 0 288 258 30 0 chr9 97322052 97322118 -20540509 - L2 LINE L2 -17 3296 3229 411 340 138 5 chr9 97322142 97322345 -20540282 - MIR SINE MIR -16 246 17 379 322 66 7 chr9 97323253 97323405 -20539222 - MIR SINE MIR -101 161 1 369 288 25 49 chr9 97323580 97323743 -20538884 - MIR SINE MIR -46 216 58 580 205 74 70 chr9 97323818 97324062 -20538565 + MER112 DNA MER1_type 7 251 -9 793 321 22 11 chr9 97324072 97324349 -20538278 + L3 LINE CR1 1225 1504 -73 191 289 116 17 chr9 97324608 97324720 -20537907 + MIR SINE MIR 15 204 -4 236 294 20 68 chr9 97325457 97325603 -20537024 + L2 LINE L2 2829 2967 -305 202 200 0 0 chr9 97325977 97326017 -20536610 + MIR SINE MIR 104 143 -65 4490 112 22 5 chr9 97326096 97326696 -20535931 + MER4B LTR ERV1 1 610 0 205 302 0 0 chr9 97326797 97326850 -20535777 + CT-rich Low_complexity Low_complexity 3 55 0 304 287 35 23 chr9 97327492 97327579 -20535048 + MIR SINE MIR 58 145 -63 216 311 66 0 chr9 97327898 97327959 -20534668 - L2 LINE L2 -59 3254 3190 218 56 28 0 chr9 97329191 97329227 -20533400 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 713 311 133 46 chr9 97329227 97329423 -20533204 + MLT1K LTR MaLR 23 201 -387 1992 216 46 46 chr9 97329423 97329924 -20532703 + MLT1D LTR MaLR 5 505 0 713 311 133 46 chr9 97329924 97330238 -20532389 + MLT1K LTR MaLR 201 578 -10 652 338 74 33 chr9 97330261 97330628 -20531999 - L3 LINE CR1 -145 1432 1051 932 154 0 0 chr9 97330686 97330829 -20531798 + AluJo SINE Alu 1 143 -169 207 150 0 67 chr9 97330844 97330904 -20531723 + (TAAAAA)n Simple_repeat Simple_repeat 3 58 0 615 299 75 9 chr9 97331108 97331322 -20531305 + MIR SINE MIR 11 238 -24 1455 292 29 6 chr9 97331900 97332376 -20530251 - LTR16C LTR ERVL 0 491 5 205 196 20 0 chr9 97333098 97333149 -20529478 + (CA)n Simple_repeat Simple_repeat 1 52 0 294 206 0 29 chr9 97333530 97333598 -20529029 + L1MD3 LINE L1 7152 7217 -778 443 207 52 0 chr9 97333834 97333950 -20528677 + L1MD3 LINE L1 7155 7276 -719 568 259 32 9 chr9 97333954 97334128 -20528499 + MLT1F1 LTR MaLR 3 183 -372 1588 142 81 169 chr9 97334130 97334720 -20527907 + L1MD3 LINE L1 7458 7995 0 283 283 94 9 chr9 97335801 97335907 -20526720 + MIR SINE MIR 13 127 -135 190 297 0 68 chr9 97335959 97336033 -20526594 + L2 LINE L2 3204 3272 0 415 246 72 36 chr9 97336042 97336180 -20526447 + MIR SINE MIR 120 262 0 322 310 28 21 chr9 97336788 97336930 -20525697 - MIR SINE MIR -74 188 46 407 298 84 26 chr9 97336970 97337161 -20525466 - MIR SINE MIR -12 250 49 236 329 46 46 chr9 97337173 97337264 -20525363 + MIR3 SINE MIR 54 147 -61 1479 201 0 28 chr9 97337264 97337552 -20525075 - L1MB1 LINE L1 0 6168 5889 236 329 46 46 chr9 97337552 97337612 -20525015 + MIR3 SINE MIR 146 205 -3 296 293 20 80 chr9 97337712 97337862 -20524765 + MIR SINE MIR 63 203 -59 290 336 60 44 chr9 97338136 97338184 -20524443 + MIR SINE MIR 7 53 -209 2661 108 8 0 chr9 97338184 97338536 -20524091 - THE1A LTR MaLR 0 355 1 12146 99 8 1 chr9 97338536 97340105 -20522522 - THE1A-int LTR MaLR 0 1580 1 2750 103 9 0 chr9 97340112 97340460 -20522167 - THE1A LTR MaLR -4 351 1 290 336 60 44 chr9 97340460 97340652 -20521975 + MIR SINE MIR 58 260 -2 2199 114 0 0 chr9 97341166 97341456 -20521171 + AluY SINE Alu 1 290 -21 274 308 51 8 chr9 97341590 97341707 -20520920 - MIR SINE MIR -21 241 120 373 196 14 16 chr9 97341924 97342023 -20520604 - MLT1B LTR MaLR -233 146 44 1010 174 7 19 chr9 97342170 97342428 -20520199 - MLT1B-int LTR MaLR -1172 199 1 1659 171 45 77 chr9 97342428 97342662 -20519965 - MLT1B LTR MaLR 0 390 173 1991 107 0 15 chr9 97342662 97342932 -20519695 - AluSx SINE Alu -11 301 36 1659 171 45 77 chr9 97342932 97343100 -20519527 - MLT1B LTR MaLR -217 173 1 542 287 36 20 chr9 97343212 97343407 -20519220 - MIR SINE MIR 0 262 65 409 312 36 7 chr9 97343879 97344017 -20518610 + MIR SINE MIR 50 191 -71 883 140 4 183 chr9 97344083 97344318 -20518309 + 7SK RNA RNA 1 193 0 286 260 14 0 chr9 97344475 97344548 -20518079 - L1MA10 LINE L1 -1 6333 6260 * 813 145 13 5 chr9 97344547 97344696 -20517931 + L1M1 LINE L1 5517 5666 -634 212 385 139 5 chr9 97344770 97344978 -20517649 + MIR SINE MIR 11 246 -16 220 125 25 0 chr9 97345485 97345525 -20517102 + (CA)n Simple_repeat Simple_repeat 1 41 0 257 303 45 53 chr9 97346357 97346489 -20516138 + MIR SINE MIR 22 152 -110 656 250 0 7 chr9 97346559 97346703 -20515924 - MIR SINE MIR -100 162 20 844 215 16 0 chr9 97346718 97346904 -20515723 - L1MD3 LINE L1 -12 7983 7795 1442 194 59 29 chr9 97347193 97347534 -20515093 - L1MC4a LINE L1 -188 7620 7270 1160 254 74 43 chr9 97347539 97347984 -20514643 + MLT1C LTR MaLR 9 467 0 1607 164 20 7 chr9 97347985 97348283 -20514344 - L1MC4a LINE L1 -532 7276 6975 388 289 37 42 chr9 97348438 97348628 -20513999 - MIR SINE MIR -71 191 3 344 255 97 9 chr9 97349796 97349913 -20512714 + MLT1H LTR MaLR 63 223 -232 636 157 36 24 chr9 97350019 97350185 -20512442 - Tigger3(Golem) DNA MER2_type -405 2624 2457 185 370 11 0 chr9 97350229 97350321 -20512306 + MIR SINE MIR 52 144 -118 232 196 0 0 chr9 97350476 97350522 -20512105 + L2 LINE L2 3268 3313 0 194 91 30 0 chr9 97350572 97350605 -20512022 + (TA)n Simple_repeat Simple_repeat 2 35 0 234 136 0 0 chr9 97351610 97351654 -20510973 + (TG)n Simple_repeat Simple_repeat 2 45 0 186 187 0 40 chr9 97351844 97351919 -20510708 + GA-rich Low_complexity Low_complexity 4 75 0 371 270 43 65 chr9 97351956 97352141 -20510486 - MIR SINE MIR -39 223 43 415 332 45 30 chr9 97352641 97352840 -20509787 + MIR SINE MIR 34 235 -27 207 114 0 0 chr9 97352898 97352933 -20509694 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 324 344 85 5 chr9 97353913 97354102 -20508525 + MIR SINE MIR 35 238 -24 223 321 96 41 chr9 97355050 97355268 -20507359 + MIR SINE MIR 33 262 0 1831 214 54 5 chr9 97355558 97355950 -20506677 + MLT1C LTR MaLR 53 463 -4 195 295 209 38 chr9 97355982 97356192 -20506435 + L2 LINE L2 3007 3252 -20 203 255 0 0 chr9 97356990 97357041 -20505586 - MIR SINE MIR -73 135 85 1163 167 44 0 chr9 97358351 97358555 -20504072 + MER20 DNA MER1_type 6 218 -1 498 263 51 0 chr9 97359175 97359312 -20503315 - L2 LINE L2 -243 3070 2927 2455 153 30 35 chr9 97359353 97359783 -20502844 + MSTC LTR MaLR 1 428 0 767 177 146 24 chr9 97359927 97360091 -20502536 - MER20 DNA MER1_type 0 219 36 381 22 0 0 chr9 97360122 97360168 -20502459 + (GA)n Simple_repeat Simple_repeat 2 47 0 224 296 28 14 chr9 97360621 97360692 -20501935 - MIR SINE MIR -120 142 71 182 283 19 0 chr9 97361420 97361473 -20501154 + MIR SINE MIR 73 126 -82 281 276 310 20 chr9 97361503 97361706 -20500921 - MIR SINE MIR 0 262 1 517 260 51 31 chr9 97362051 97362247 -20500380 - Charlie8 DNA MER1_type -2150 267 68 189 0 0 0 chr9 97362263 97362284 -20500343 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 917 293 125 23 chr9 97362443 97362970 -20499657 + L2 LINE L2 2739 3313 0 408 276 68 41 chr9 97363041 97363262 -20499365 + L1ME LINE L1 5582 5808 -313 236 298 198 16 chr9 97364490 97364611 -20498016 - L3 LINE CR1 -13 1564 1422 239 371 9 17 chr9 97364687 97364803 -20497824 + MIR3 SINE MIR 5 119 -89 215 325 103 8 chr9 97364927 97365044 -20497583 + L2 LINE L2 3145 3272 0 2135 132 0 7 chr9 97365313 97365623 -20497004 + AluSc SINE Alu 1 308 -1 371 303 72 7 chr9 97366320 97366472 -20496155 - MER112 DNA MER1_type -12 248 87 182 375 14 14 chr9 97366671 97366743 -20495884 + MIR SINE MIR 24 95 -167 291 54 0 0 chr9 97366910 97366947 -20495680 + (TTCA)n Simple_repeat Simple_repeat 2 38 0 555 289 159 47 chr9 97366951 97367353 -20495274 - L2 LINE L2 0 3313 2867 192 161 0 0 chr9 97368034 97368065 -20494562 + MIR SINE MIR 49 79 -183 766 204 12 12 chr9 97368091 97368253 -20494374 + MIR SINE MIR 60 221 -41 822 102 8 24 chr9 97369074 97369201 -20493426 + 7SK RNA RNA 1 125 -68 21225 126 14 17 chr9 97369313 97369550 -20493077 - L1PA8A LINE L1 -123 6323 6087 809 115 0 0 chr9 97369550 97369663 -20492964 - L1PA7 LINE L1 -1 6153 6041 21225 126 14 17 chr9 97369663 97371221 -20491406 - L1PA8A LINE L1 -359 6087 4526 1584 54 0 0 chr9 97371221 97371407 -20491220 - L1PA4 LINE L1 -3 6152 5967 21225 126 14 17 chr9 97371407 97374669 -20487958 - L1PA8A LINE L1 -1920 4526 1233 231 103 0 0 chr9 97374669 97374708 -20487919 + (TTG)n Simple_repeat Simple_repeat 1 39 0 21225 126 14 17 chr9 97374708 97375348 -20487279 - L1PA8A LINE L1 -5213 1233 593 891 135 8 0 chr9 97375363 97375496 -20487131 - AluSq/x SINE Alu -178 134 1 203 357 47 23 chr9 97375533 97375662 -20486965 - L2 LINE L2 -2 3311 3180 277 279 47 12 chr9 97376117 97376203 -20486424 - L2 LINE L2 -17 3255 3167 302 247 53 53 chr9 97376529 97376684 -20485943 - MIR SINE MIR -54 154 4 273 324 15 37 chr9 97377046 97377182 -20485445 + L3 LINE CR1 810 942 -635 999 223 39 18 chr9 97377182 97377411 -20485216 + L1M2c LINE L1 1 234 -6555 9153 224 78 35 chr9 97377722 97381225 -20481402 + L1M2c LINE L1 1328 5068 -1720 2079 139 119 21 chr9 97381225 97381613 -20481014 + MSTA LTR MaLR 1 426 -2 9153 224 78 35 chr9 97381613 97382083 -20480544 + L1M2c LINE L1 5068 5516 -1272 207 357 64 25 chr9 97383578 97383735 -20478892 + MIR3 SINE MIR 45 207 -1 628 277 123 47 chr9 97384129 97384340 -20478287 - L2 LINE L2 -5 3308 3114 2116 117 0 3 chr9 97384340 97384657 -20477970 - AluSx SINE Alu 0 316 1 628 277 123 47 chr9 97384657 97384891 -20477736 - L2 LINE L2 -199 3114 2828 664 232 66 7 chr9 97385271 97385422 -20477205 + MER58B DNA MER1_type 182 341 0 197 367 50 17 chr9 97385500 97385620 -20477007 + MIR SINE MIR 22 145 -63 1031 88 0 0 chr9 97385625 97385750 -20476877 + AluSq/x SINE Alu 1 125 -187 313 324 27 0 chr9 97386085 97386196 -20476431 + MIR SINE MIR 93 206 -56 2034 215 66 10 chr9 97386270 97386754 -20475873 - L1MB7 LINE L1 -10 6174 5664 264 245 19 94 chr9 97386762 97386831 -20475796 + MIR SINE MIR 89 149 -113 1907 139 24 3 chr9 97386831 97387140 -20475487 - AluSx SINE Alu 0 312 1 264 245 19 94 chr9 97387140 97387176 -20475451 + MIR SINE MIR 149 186 -76 21 0 0 0 chr9 97387236 97387257 -20475370 + AT_rich Low_complexity Low_complexity 1 21 0 228 234 65 56 chr9 97387815 97387922 -20474705 - L2 LINE L2 -3 3310 3203 788 277 146 34 chr9 97388327 97388684 -20473943 - MLT1J LTR MaLR -7 504 108 617 283 44 15 chr9 97389348 97389553 -20473074 + MIR SINE MIR 16 226 -36 181 0 69 0 chr9 97389962 97389991 -20472636 + (TCTCCC)n Simple_repeat Simple_repeat 4 34 0 240 86 0 0 chr9 97390215 97390250 -20472377 + (A)n Simple_repeat Simple_repeat 1 35 0 224 238 69 62 chr9 97390692 97390852 -20471775 + MIR SINE MIR 52 212 -50 208 273 86 39 chr9 97391214 97391342 -20471285 - MIR3 SINE MIR -35 173 40 215 269 0 0 chr9 97391470 97391522 -20471105 - L2 LINE L2 -12 3301 3250 225 239 0 120 chr9 97391598 97391690 -20470937 + L2 LINE L2 3186 3266 -6 2073 161 3 20 chr9 97392146 97392487 -20470140 + MER1B DNA MER1_type 3 337 0 304 290 30 76 chr9 97393037 97393168 -20469459 + MIR3 SINE MIR 35 159 -49 665 265 10 29 chr9 97393171 97393375 -20469252 + Charlie8 DNA MER1_type 2 201 -2216 187 225 0 0 chr9 97393574 97393614 -20469013 + MIR3 SINE MIR 151 190 -18 208 351 7 40 chr9 97394561 97394712 -20467915 + L2 LINE L2 2716 2861 -453 2114 141 32 22 chr9 97394773 97395143 -20467484 + THE1C LTR MaLR 1 374 -1 356 304 56 103 chr9 97395176 97395515 -20467112 + L2 LINE L2 2939 3261 -11 24 0 0 0 chr9 97395631 97395655 -20466972 + AT_rich Low_complexity Low_complexity 1 24 0 236 340 57 17 chr9 97396849 97397075 -20465552 + MIR SINE MIR 18 254 -8 1180 174 14 14 chr9 97397484 97397703 -20464924 + MER20 DNA MER1_type 1 219 0 223 291 0 0 chr9 97398210 97398265 -20464362 - L2 LINE L2 -10 3262 3208 269 304 155 27 chr9 97398822 97398970 -20463657 + MIR SINE MIR 23 189 -73 224 119 34 51 chr9 97399141 97399200 -20463427 + (CATTT)n Simple_repeat Simple_repeat 2 59 0 227 306 0 0 chr9 97399368 97399430 -20463197 - MIR SINE MIR -90 172 111 1721 159 7 30 chr9 97399691 97399993 -20462634 + AluSx SINE Alu 1 295 -17 244 259 185 0 chr9 97400029 97400110 -20462517 - MIR SINE MIR -110 152 57 591 264 103 29 chr9 97401069 97401311 -20461316 - MIR SINE MIR -1 261 2 267 336 82 0 chr9 97401822 97401932 -20460695 + MIR SINE MIR 28 146 -62 189 147 0 0 chr9 97402260 97402294 -20460333 + (TG)n Simple_repeat Simple_repeat 1 34 0 216 301 18 30 chr9 97402294 97402460 -20460167 + GA-rich Low_complexity Low_complexity 2 165 0 202 266 0 16 chr9 97403018 97403082 -20459545 + CT-rich Low_complexity Low_complexity 2 64 0 542 290 91 13 chr9 97403263 97403494 -20459133 + MIR SINE MIR 13 261 -1 214 268 61 37 chr9 97403701 97403783 -20458844 + L3 LINE CR1 776 859 -718 248 302 52 17 chr9 97403850 97403966 -20458661 - MIR SINE MIR -82 180 61 185 140 43 43 chr9 97404399 97404492 -20458135 + (TTATA)n Simple_repeat Simple_repeat 5 97 0 398 195 49 12 chr9 97404517 97404681 -20457946 + (TA)n Simple_repeat Simple_repeat 2 171 0 197 175 28 34 chr9 97404715 97404892 -20457735 + (TATAA)n Simple_repeat Simple_repeat 5 180 0 329 259 42 54 chr9 97406576 97406742 -20455885 - MIR3 SINE MIR -15 193 30 688 227 98 45 chr9 97406775 97407061 -20455566 + MER113 DNA MER1_type? 8 308 -213 464 248 41 8 chr9 97407589 97407710 -20454917 - L2 LINE L2 0 3313 3189 207 219 177 10 chr9 97407829 97407925 -20454702 + MIR3 SINE MIR 82 193 -15 271 250 0 13 chr9 97408206 97408282 -20454345 - MIR SINE MIR -8 254 180 1119 225 67 97 chr9 97408292 97408509 -20454118 - LTR16C LTR ERVL 0 491 288 1637 179 43 7 chr9 97408509 97408810 -20453817 + AluJb SINE Alu 1 312 0 1119 225 67 97 chr9 97408810 97408965 -20453662 - LTR16C LTR ERVL -203 288 130 239 302 0 0 chr9 97409269 97409332 -20453295 + (TATG)n Simple_repeat Simple_repeat 2 64 0 803 190 78 0 chr9 97409443 97409585 -20453042 - MER45A DNA AcHobo 0 178 26 214 227 0 0 chr9 97409746 97409808 -20452819 + MIR SINE MIR 92 140 -68 248 227 253 0 chr9 97409988 97410063 -20452564 + MIR SINE MIR 34 127 -81 215 233 0 0 chr9 97410301 97410344 -20452283 + (CATA)n Simple_repeat Simple_repeat 2 44 0 208 347 0 10 chr9 97410690 97410788 -20451839 + CT-rich Low_complexity Low_complexity 1 97 0 216 252 45 54 chr9 97410971 97411082 -20451545 + MIR SINE MIR 68 145 -63 348 43 0 0 chr9 97411168 97411214 -20451413 + (ATTG)n Simple_repeat Simple_repeat 2 47 0 344 287 36 30 chr9 97412849 97412983 -20449644 - MIR SINE MIR -77 185 51 395 299 69 0 chr9 97412983 97413127 -20449500 + MIR3 SINE MIR 1 154 -54 275 238 30 50 chr9 97413617 97413718 -20448909 + MIR SINE MIR 164 262 0 300 286 41 0 chr9 97413723 97413821 -20448806 - L2 LINE L2 -23 3249 3148 345 291 71 7 chr9 97413834 97413975 -20448652 - MIR SINE MIR -111 151 2 280 282 127 0 chr9 97414185 97414295 -20448332 - MIR SINE MIR -56 152 29 194 396 10 0 chr9 97414955 97415056 -20447571 - L2 LINE L2 -30 3242 3141 1016 256 74 74 chr9 97415183 97415723 -20446904 - MLT1H LTR MaLR -5 544 5 195 339 68 25 chr9 97416374 97416492 -20446135 - L2 LINE L2 -231 3041 2919 288 287 8 62 chr9 97417050 97417179 -20445448 + MIR3 SINE MIR 81 202 -6 355 284 20 20 chr9 97417431 97417579 -20445048 - MIR SINE MIR -29 233 86 233 292 62 28 chr9 97417911 97418055 -20444572 + MIR SINE MIR 108 256 -6 337 365 0 0 chr9 97419184 97419299 -20443328 + L2 LINE L2 3149 3263 -9 186 167 0 0 chr9 97419614 97419650 -20442977 + (TCCA)n Simple_repeat Simple_repeat 1 36 0 180 284 86 0 chr9 97420561 97420642 -20441985 - L2 LINE L2 -16 3256 3169 339 305 0 0 chr9 97420676 97420771 -20441856 + L1MC4 LINE L1 6609 6703 -1339 773 276 15 30 chr9 97420823 97421087 -20441540 - MIR SINE MIR 0 262 3 333 374 12 12 chr9 97421190 97421436 -20441191 - L2 LINE L2 -450 2864 2619 1256 311 48 32 chr9 97421438 97421933 -20440694 + LTR33 LTR ERVL 19 521 0 2540 80 0 6 chr9 97423102 97423436 -20439191 - AluSq SINE Alu 0 332 1 206 200 0 33 chr9 97423785 97423845 -20438782 + (TA)n Simple_repeat Simple_repeat 2 59 0 782 300 63 33 chr9 97423907 97424061 -20438566 - L2 LINE L2 0 3313 3165 2018 161 0 6 chr9 97424061 97424089 -20438538 - AluSx SINE Alu -3 309 282 208 0 0 0 chr9 97424089 97424112 -20438515 + (TTTTA)n Simple_repeat Simple_repeat 1 175 0 2018 161 0 6 chr9 97424112 97424394 -20438233 - AluSx SINE Alu -30 282 1 782 300 63 33 chr9 97424394 97424699 -20437928 - L2 LINE L2 -148 3165 2840 199 327 37 9 chr9 97425499 97425606 -20437021 - L3 LINE CR1 -75 1502 1393 721 179 0 0 chr9 97425724 97425847 -20436780 - FRAM SINE Alu -21 155 33 320 281 158 14 chr9 97426561 97426700 -20435927 - MIR3 SINE MIR -11 197 39 380 327 99 5 chr9 97427138 97427349 -20435278 + MIR SINE MIR 32 262 0 216 0 0 0 chr9 97427526 97427550 -20435077 + (A)n Simple_repeat Simple_repeat 1 24 0 296 181 42 14 chr9 97429671 97429743 -20432884 - MIR3 SINE MIR -54 154 81 880 170 27 21 chr9 97430977 97431165 -20431462 + MER53 DNA DNA 1 189 0 449 264 136 38 chr9 97431217 97431378 -20431249 + L2 LINE L2 2362 2506 -808 1799 157 13 0 chr9 97431378 97431677 -20430950 + AluSx SINE Alu 1 303 -9 449 264 136 38 chr9 97431677 97431780 -20430847 + L2 LINE L2 2506 2652 -662 204 40 0 0 chr9 97431839 97431864 -20430763 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 1385 195 4 8 chr9 97431884 97432140 -20430487 + MER58B DNA MER1_type 87 341 0 456 298 53 11 chr9 97432140 97432328 -20430299 + L2 LINE L2 2673 2868 -446 201 184 0 0 chr9 97432330 97432368 -20430259 + L2 LINE L2 3017 3054 -218 219 270 50 30 chr9 97432442 97432542 -20430085 + L2 LINE L2 3168 3269 -3 350 279 132 0 chr9 97432853 97432982 -20429645 + MIR3 SINE MIR 30 175 -33 256 283 40 24 chr9 97433491 97433583 -20429044 + MIR SINE MIR 29 124 -84 375 295 0 9 chr9 97433651 97433763 -20428864 + L2 LINE L2 3203 3313 0 267 240 0 0 chr9 97433792 97433842 -20428785 - MER117 DNA MER1_type -26 171 122 377 206 0 22 chr9 97434116 97434208 -20428419 + MER113 DNA MER1_type? 126 215 -306 26 0 0 0 chr9 97434350 97434376 -20428251 + AT_rich Low_complexity Low_complexity 1 26 0 2185 100 0 17 chr9 97434656 97434946 -20427681 + AluSc SINE Alu 1 285 -24 314 276 20 0 chr9 97435624 97435722 -20426905 + (CATATA)n Simple_repeat Simple_repeat 2 101 0 1203 35 25 124 chr9 97436461 97436530 -20426097 + L1MA1 LINE L1 6121 6195 -107 1599 132 120 8 chr9 97436530 97436796 -20425831 + AluSg1 SINE Alu 1 296 -13 1203 35 25 124 chr9 97436796 97436872 -20425755 + L1MA1 LINE L1 6195 6243 -59 2115 142 0 0 chr9 97436872 97437174 -20425453 + AluSx SINE Alu 1 302 -10 1203 35 25 124 chr9 97437174 97437229 -20425398 + L1MA1 LINE L1 6243 6302 0 182 233 67 22 chr9 97437506 97437596 -20425031 - MIR3 SINE MIR -4 204 111 189 175 25 12 chr9 97437706 97437755 -20424872 - MIR SINE MIR -112 150 103 513 249 66 46 chr9 97439302 97439499 -20423128 - MER3 DNA MER1_type -8 201 1 263 321 11 18 chr9 97440194 97440417 -20422210 + CT-rich Low_complexity Low_complexity 1 221 0 404 310 63 69 chr9 97441388 97441707 -20420920 + L2 LINE L2 2457 2773 -541 3156 72 0 8 chr9 97441707 97442107 -20420520 + THE1-int LTR MaLR 1184 1580 0 935 256 55 74 chr9 97442703 97443325 -20419302 + L2 LINE L2 2576 3191 -122 392 0 21 0 chr9 97443325 97443373 -20419254 + (CA)n Simple_repeat Simple_repeat 2 50 0 935 256 55 74 chr9 97443373 97443474 -20419153 + L2 LINE L2 3191 3292 -21 282 316 28 38 chr9 97443752 97443964 -20418663 - L2 LINE L2 -556 2758 2549 231 303 30 0 chr9 97444785 97444851 -20417776 + MIR3 SINE MIR 94 161 -47 480 335 21 26 chr9 97447384 97447617 -20415010 + L2 LINE L2 2829 3060 -212 268 295 0 32 chr9 97447738 97447833 -20414794 - L2 LINE L2 -8 3264 3173 223 242 0 0 chr9 97447920 97447982 -20414645 - MIR SINE MIR -85 123 62 320 348 15 0 chr9 97449115 97449250 -20413377 + CT-rich Low_complexity Low_complexity 1 137 0 23 0 0 0 chr9 97449571 97449594 -20413033 + AT_rich Low_complexity Low_complexity 1 23 0 508 191 0 0 chr9 97449661 97449745 -20412882 + AluJ/FLAM SINE Alu 2 85 -227 206 206 16 0 chr9 97450076 97450139 -20412488 + (TCCA)n Simple_repeat Simple_repeat 4 67 0 340 333 42 7 chr9 97450249 97450393 -20412234 - MIR3 SINE MIR -5 203 55 191 343 123 55 chr9 97450398 97450544 -20412083 - MIR3 SINE MIR -15 193 38 829 235 122 0 chr9 97451442 97451672 -20410955 - L1ME2 LINE L1 -2 6162 5905 1788 186 21 3 chr9 97451672 97451999 -20410628 + MER58B DNA MER1_type 1 333 -8 292 229 72 0 chr9 97452005 97452088 -20410539 - L1ME2 LINE L1 -252 5912 5824 440 360 5 5 chr9 97452150 97452347 -20410280 - MER117 DNA MER1_type 0 197 1 528 304 77 1 chr9 97452368 97452591 -20410036 + MIR SINE MIR 15 251 -11 287 320 124 7 chr9 97452826 97452979 -20409648 + L2 LINE L2 2720 2890 -424 418 138 0 23 chr9 97453107 97453194 -20409433 - L1MB7 LINE L1 -16 6168 6084 2491 132 27 52 chr9 97453194 97453633 -20408994 - MSTA LTR MaLR 0 428 1 3265 150 88 0 chr9 97453634 97454233 -20408394 - L1MB7 LINE L1 -97 6087 5436 1216 88 0 0 chr9 97454439 97454586 -20408041 - AluSc SINE Alu -162 147 1 216 263 84 32 chr9 97455230 97455325 -20407302 + L2 LINE L2 3161 3260 -12 2363 159 39 10 chr9 97455718 97456133 -20406494 - MSTA LTR MaLR 0 428 2 241 310 12 2 chr9 97456403 97456503 -20406124 - MIR SINE MIR -62 146 52 205 287 139 0 chr9 97456629 97456730 -20405897 + MIR SINE MIR 30 144 -64 350 259 209 20 chr9 97457070 97457240 -20405387 - L1ME4a LINE L1 -227 5894 5757 188 35 35 0 chr9 97457240 97457269 -20405358 + (TA)n Simple_repeat Simple_repeat 1 30 0 350 259 209 20 chr9 97457269 97457395 -20405232 - L1ME4a LINE L1 -364 5757 5542 222 352 0 0 chr9 97458074 97458165 -20404462 - MIR SINE MIR 0 262 172 232 370 50 8 chr9 97458573 97458692 -20403935 + MIR SINE MIR 21 144 -118 2334 190 59 2 chr9 97458735 97459213 -20403414 + MLT1D LTR MaLR 1 505 0 239 288 144 18 chr9 97459224 97459446 -20403181 + MIR SINE MIR 13 262 0 216 0 0 0 chr9 97460517 97460541 -20402086 + (T)n Simple_repeat Simple_repeat 1 24 0 218 284 64 9 chr9 97460655 97460764 -20401863 + MIR SINE MIR 36 150 -112 349 301 7 37 chr9 97461890 97462026 -20400601 - MIR SINE MIR -112 150 19 25 31 0 0 chr9 97462181 97462213 -20400414 + AT_rich Low_complexity Low_complexity 1 32 0 202 196 22 0 chr9 97462219 97462265 -20400362 - L2 LINE L2 -4 3268 3222 * 633 278 15 34 chr9 97462232 97462437 -20400190 - MIR SINE MIR -12 250 50 213 289 0 0 chr9 97463056 97463108 -20399519 + MIR3 SINE MIR 105 156 -52 757 258 79 4 chr9 97463175 97463404 -20399223 - MIR SINE MIR 0 262 17 808 195 6 24 chr9 97464037 97464201 -20398426 + FRAM SINE Alu 1 161 -15 436 274 49 37 chr9 97464228 97464392 -20398235 + MIR SINE MIR 47 212 -50 374 303 29 57 chr9 97465181 97465356 -20397271 - L2 LINE L2 0 3313 3144 425 272 75 23 chr9 97465403 97465576 -20397051 + MIR SINE MIR 81 262 0 225 269 154 88 chr9 97466696 97466876 -20395751 - MLT1J LTR MaLR -232 279 75 1624 143 52 80 chr9 97466876 97467262 -20395365 - THE1C LTR MaLR 0 375 1 225 269 154 88 chr9 97467262 97467341 -20395286 - MLT1J LTR MaLR -436 75 3 407 254 83 28 chr9 97467458 97467639 -20394988 + MIR SINE MIR 57 247 -15 306 248 93 0 chr9 97467727 97467869 -20394758 + MIR SINE MIR 32 191 -63 357 361 97 0 chr9 97467909 97468136 -20394491 + MIR SINE MIR 1 249 -13 231 114 0 0 chr9 97468149 97468184 -20394443 + (ATG)n Simple_repeat Simple_repeat 2 36 0 180 77 0 0 chr9 97468202 97468228 -20394399 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 255 308 15 0 chr9 97469038 97469103 -20393524 + Charlie8 DNA MER1_type 1 66 -2351 270 0 0 0 chr9 97469119 97469149 -20393478 + (A)n Simple_repeat Simple_repeat 1 30 0 427 290 10 0 chr9 97469244 97469344 -20393283 + Charlie8 DNA MER1_type 176 276 -2141 1974 141 42 30 chr9 97469404 97469738 -20392889 + MER1B DNA MER1_type 2 339 0 207 213 213 0 chr9 97470343 97470404 -20392223 + MIR3 SINE MIR 81 154 -54 237 320 0 0 chr9 97470591 97470669 -20391958 + L2 LINE L2 2811 2888 -384 193 250 0 0 chr9 97470841 97470881 -20391746 + MIR SINE MIR 50 89 -173 192 315 0 0 chr9 97470979 97471033 -20391594 + MIR SINE MIR 83 136 -126 284 204 19 0 chr9 97471053 97471107 -20391520 + Tigger5 DNA MER2_type 1 55 -2268 447 200 11 11 chr9 97471114 97471204 -20391423 + Tigger5 DNA MER2_type 2234 2323 0 246 326 42 0 chr9 97471205 97471300 -20391327 + MIR SINE MIR 154 252 -10 213 310 90 10 chr9 97471813 97471913 -20390714 + L2 LINE L2 3141 3248 -24 272 247 144 0 chr9 97472028 97472125 -20390502 + MIR SINE MIR 34 144 -64 209 325 113 12 chr9 97472326 97472486 -20390141 - MIR SINE MIR -26 236 61 372 295 9 9 chr9 97472658 97472770 -20389857 - MIR3 SINE MIR -11 197 86 2038 144 0 0 chr9 97473374 97473665 -20388962 + AluY SINE Alu 1 291 -20 338 328 0 35 chr9 97473849 97473926 -20388701 + MIR SINE MIR 88 166 -96 568 89 13 0 chr9 97473926 97474005 -20388622 - MADE1 DNA Mariner 0 80 1 338 328 0 35 chr9 97474005 97474101 -20388526 + MIR SINE MIR 166 255 -7 611 286 124 14 chr9 97474254 97474471 -20388156 - MIR SINE MIR -1 261 21 219 69 0 0 chr9 97474491 97474520 -20388107 + (TCCA)n Simple_repeat Simple_repeat 4 32 0 238 250 177 31 chr9 97474520 97474616 -20388011 - L2 LINE L2 -22 3291 3182 208 250 0 0 chr9 97475198 97475254 -20387373 + MIR SINE MIR 99 154 -108 272 296 0 25 chr9 97475288 97475369 -20387258 - MER96B DNA MER1_type? -1 416 338 * 572 178 47 31 chr9 97475368 97475497 -20387130 - MER96B DNA MER1_type? -286 131 1 378 322 84 1 chr9 97475670 97475812 -20386815 + MIR SINE MIR 37 187 -63 2147 120 0 10 chr9 97475900 97476201 -20386426 - AluSq SINE Alu -15 298 1 308 311 38 0 chr9 97476338 97476444 -20386183 + MIR SINE MIR 41 150 -58 331 261 15 92 chr9 97477683 97477878 -20384749 - MIR SINE MIR -50 212 33 342 247 26 105 chr9 97478156 97478346 -20384281 + HAL1 LINE L1 1287 1461 -1046 226 305 9 19 chr9 97478894 97478999 -20383628 - MIR SINE MIR -42 220 117 230 333 0 26 chr9 97479370 97479487 -20383140 + CT-rich Low_complexity Low_complexity 4 117 0 302 300 165 12 chr9 97479621 97479791 -20382836 - MIR SINE MIR -65 197 2 214 385 34 0 chr9 97479957 97480074 -20382553 - MIR SINE MIR -89 173 53 1161 253 94 41 chr9 97480550 97480988 -20381639 + MLT1C LTR MaLR 7 467 0 822 178 33 124 chr9 97481050 97481291 -20381336 - AluJo SINE Alu -93 219 1 219 36 0 0 chr9 97482374 97482402 -20380225 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 696 313 42 8 chr9 97482528 97482768 -20379859 - MIR SINE MIR -6 256 9 513 321 64 23 chr9 97483125 97483343 -20379284 - MIR SINE MIR -3 259 33 375 23 0 0 chr9 97483419 97483463 -20379164 + (TA)n Simple_repeat Simple_repeat 1 44 0 786 82 0 0 chr9 97483463 97483561 -20379066 - AluSg1 SINE Alu -210 99 2 298 301 170 62 chr9 97483951 97484287 -20378340 - L2 LINE L2 -8 3264 2893 219 324 15 0 chr9 97484407 97484475 -20378152 - MIR3 SINE MIR -14 194 126 258 268 120 42 chr9 97484634 97484776 -20377851 - MIR SINE MIR -28 234 82 285 292 31 39 chr9 97485800 97485930 -20376697 - L2 LINE L2 -13 3300 3172 427 316 45 29 chr9 97485936 97486180 -20376447 - MIR SINE MIR -12 250 3 2164 135 0 0 chr9 97486433 97486730 -20375897 + AluSg SINE Alu 1 297 -13 387 293 7 44 chr9 97486969 97487163 -20375464 + MIR SINE MIR 21 206 -56 26 30 0 0 chr9 97487196 97487229 -20375398 + AT_rich Low_complexity Low_complexity 1 33 0 205 237 51 34 chr9 97487354 97487413 -20375214 - L2 LINE L2 -4 3268 3209 25 0 0 0 chr9 97487566 97487591 -20375036 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr9 97487706 97487727 -20374900 + AT_rich Low_complexity Low_complexity 1 21 0 359 363 65 0 chr9 97488054 97488222 -20374405 + MIR SINE MIR 34 212 -50 375 218 97 103 chr9 97488348 97488492 -20374135 - LTR33 LTR ERVL -3 518 374 1745 211 31 40 chr9 97488492 97488914 -20373713 - LTR52 LTR ERVL -3 418 1 375 218 97 103 chr9 97488914 97488934 -20373693 - LTR33 LTR ERVL -147 374 355 435 323 45 27 chr9 97489024 97489244 -20373383 - LTR33 LTR ERVL -295 226 3 1954 158 3 3 chr9 97489275 97489585 -20373042 + AluSq SINE Alu 1 310 -3 409 333 142 18 chr9 97489633 97489858 -20372769 - MIR SINE MIR -5 257 5 383 255 37 48 chr9 97490044 97490229 -20372398 - MIR SINE MIR -62 146 2 433 293 8 23 chr9 97490730 97490863 -20371764 - MIR3 SINE MIR -46 162 32 269 290 56 37 chr9 97490943 97491050 -20371577 + L2 LINE L2 3147 3255 -58 * 353 334 46 89 chr9 97491048 97491398 -20371229 + L2 LINE L2 2938 3272 0 223 309 63 32 chr9 97491663 97491811 -20370816 - MIR SINE MIR -48 160 18 320 256 99 33 chr9 97492270 97492391 -20370236 - MIR SINE MIR -75 187 59 241 299 79 16 chr9 97493269 97493396 -20369231 - MIR3 SINE MIR -67 141 7 721 208 81 65 chr9 97493895 97494155 -20368472 + ORSL DNA AcHobo 12 275 0 2178 119 3 3 chr9 97494177 97494479 -20368148 - AluSx SINE Alu -10 302 1 291 328 63 32 chr9 97495068 97495257 -20367370 + MIR SINE MIR 36 230 -32 266 304 159 31 chr9 97496250 97496609 -20366018 - L2 LINE L2 -104 3209 2805 230 332 99 43 chr9 97496717 97497005 -20365622 - L2 LINE L2 -181 3091 2778 2448 176 34 36 chr9 97497018 97497496 -20365131 - L1MC1 LINE L1 0 6333 5857 1046 163 0 26 chr9 97497762 97497952 -20364675 - MER3 DNA MER1_type -24 185 1 231 317 63 88 chr9 97497989 97498060 -20364567 + MIR SINE MIR 20 91 -171 2383 196 11 11 chr9 97498060 97498519 -20364108 - L1MB4 LINE L1 0 6180 5722 231 317 63 88 chr9 97498519 97498652 -20363975 + MIR SINE MIR 91 219 -43 234 278 43 91 chr9 97499418 97499605 -20363022 - MLT1L LTR MaLR -221 394 217 204 333 89 15 chr9 97499705 97499840 -20362787 - L2 LINE L2 -209 3063 2919 2093 138 0 16 chr9 97500676 97500988 -20361639 - AluSx SINE Alu 0 312 6 1546 214 63 6 chr9 97501079 97501438 -20361189 - L1MD3 LINE L1 -8 7987 7503 183 80 0 0 chr9 97501438 97501463 -20361164 + (CATAT)n Simple_repeat Simple_repeat 3 27 0 1546 214 63 6 chr9 97501463 97501570 -20361057 - L1MD3 LINE L1 -492 7503 7404 586 163 0 0 chr9 97501573 97501659 -20360968 - MLT1F1 LTR MaLR -445 122 37 314 247 115 50 chr9 97502661 97502843 -20359784 + L2 LINE L2 3014 3207 -106 * 692 245 74 23 chr9 97502837 97503053 -20359574 + MIR SINE MIR 36 262 0 372 265 26 8 chr9 97503074 97503191 -20359436 + L2 LINE L2 3186 3304 -9 225 364 33 38 chr9 97504527 97504711 -20357916 - L2 LINE L2 -454 2860 2678 338 213 9 102 chr9 97505606 97505714 -20356913 + MIR SINE MIR 115 212 -50 * 649 304 95 23 chr9 97505698 97506004 -20356623 + L2 LINE L2 2956 3283 -30 490 264 16 0 chr9 97506365 97506486 -20356141 - MIR SINE MIR -27 235 113 2135 136 0 0 chr9 97506878 97507179 -20355448 - AluSx SINE Alu -11 301 1 437 267 74 74 chr9 97508283 97508568 -20354059 + L2 LINE L2 2863 3147 -125 256 155 14 84 chr9 97508605 97508676 -20353951 - MIR3 SINE MIR -135 73 8 2000 112 0 87 chr9 97509046 97509369 -20353258 + AluSx SINE Alu 1 295 -17 2025 152 58 19 chr9 97509453 97509814 -20352813 + THE1C LTR MaLR 1 375 0 216 308 0 0 chr9 97510072 97510124 -20352503 - MIR SINE MIR -69 139 88 448 308 8 0 chr9 97510182 97510315 -20352312 + MIR SINE MIR 64 197 -65 215 233 133 33 chr9 97510412 97510502 -20352125 + MIR3 SINE MIR 67 165 -43 * 454 284 88 0 chr9 97510495 97510643 -20351984 + MIR SINE MIR 85 245 -17 743 12 47 0 chr9 97511105 97511191 -20351436 + L1P1 LINE L1 5563 5652 -503 1756 49 0 0 chr9 97511291 97511495 -20351132 + L1PA4 LINE L1 5951 6154 -1 470 357 65 15 chr9 97512037 97512300 -20350327 - L3 LINE CR1 -3 1574 1299 327 351 60 15 chr9 97513561 97513695 -20348932 - MIR3 SINE MIR -60 148 9 245 240 0 0 chr9 97513743 97513793 -20348834 + (ATGGTG)n Simple_repeat Simple_repeat 3 52 0 1739 191 32 17 chr9 97514090 97514510 -20348117 + MLT2B1 LTR ERVL 3 478 -42 249 33 0 0 chr9 97514510 97514540 -20348087 + (TCCA)n Simple_repeat Simple_repeat 2 31 0 209 98 24 0 chr9 97514560 97514601 -20348026 + (TC)n Simple_repeat Simple_repeat 1 42 0 1734 120 77 7 chr9 97514601 97514875 -20347752 - AluSx SINE Alu -11 301 9 327 124 0 35 chr9 97514875 97514943 -20347684 + MLT2B1 LTR ERVL 389 520 0 196 350 106 31 chr9 97515178 97515498 -20347129 - L2 LINE L2 -1357 1957 1614 223 227 0 23 chr9 97515647 97515691 -20346936 + MIR SINE MIR 43 85 -123 536 311 55 58 chr9 97515934 97516629 -20345998 + L1MC4a LINE L1 5255 5947 -1861 278 246 0 16 chr9 97517001 97517062 -20345565 + CT-rich Low_complexity Low_complexity 1 60 0 182 262 66 16 chr9 97517082 97517143 -20345484 - L2 LINE L2 -62 3251 3188 212 250 0 0 chr9 97518245 97518293 -20344334 + L2 LINE L2 3211 3258 -14 220 307 27 0 chr9 97518566 97518641 -20343986 - MIR SINE MIR -112 150 74 1500 233 41 60 chr9 97518881 97519345 -20343282 - MLT1C LTR MaLR -3 464 10 956 255 17 8 chr9 97519379 97519618 -20343009 + MIR SINE MIR 4 244 -18 560 312 34 30 chr9 97519636 97519870 -20342757 + MIR SINE MIR 9 243 -19 311 341 151 6 chr9 97520608 97520787 -20341840 + MIR SINE MIR 2 206 -56 * 479 280 107 100 chr9 97520783 97521072 -20341555 + L2 LINE L2 2981 3271 -1 1300 47 6 53 chr9 97521105 97521276 -20341351 + AluY SINE Alu 1 163 -148 507 237 98 55 chr9 97521435 97521643 -20340984 - MIR SINE MIR -31 231 13 220 301 266 7 chr9 97522137 97522280 -20340347 - MIR SINE MIR -52 210 31 7472 179 49 52 chr9 97523539 97523700 -20338927 - L1MC3 LINE L1 -8 7777 7617 360 0 0 0 chr9 97523700 97523740 -20338887 + (CA)n Simple_repeat Simple_repeat 2 41 0 7472 179 49 52 chr9 97523740 97525256 -20337371 - L1MC3 LINE L1 -168 7617 6106 1358 254 47 82 chr9 97525417 97525989 -20336638 - L1MCb LINE L1 -5493 552 1 1263 295 124 8 chr9 97526678 97527152 -20335475 - MLT1H LTR MaLR -6 543 15 1904 114 13 67 chr9 97527191 97527511 -20335116 + AluSx SINE Alu 1 304 0 208 261 45 23 chr9 97528629 97528717 -20333910 - MIR SINE MIR -75 187 98 483 287 60 30 chr9 97529137 97529304 -20333323 + MER5A DNA MER1_type 7 178 -11 1900 132 3 33 chr9 97529741 97530045 -20332582 - AluSc SINE Alu -14 295 1 1510 153 55 18 chr9 97530423 97530698 -20331929 + AluJb SINE Alu 13 297 -15 3761 165 69 8 chr9 97531497 97532208 -20330419 + L1MB4 LINE L1 5408 6161 -19 25 75 0 0 chr9 97532213 97532266 -20330361 + AT_rich Low_complexity Low_complexity 1 53 0 441 348 71 9 chr9 97534482 97534692 -20327935 + MIR SINE MIR 23 245 -17 268 227 100 0 chr9 97535466 97535559 -20327068 + MIR SINE MIR 51 150 -62 386 274 196 23 chr9 97535751 97535970 -20326657 + MIR SINE MIR 4 260 -2 364 231 0 104 chr9 97536280 97536414 -20326213 - MIR3 SINE MIR -30 178 59 324 315 21 14 chr9 97536650 97536793 -20325834 + GA-rich Low_complexity Low_complexity 1 144 0 331 282 61 30 chr9 97536811 97536942 -20325685 - MIR SINE MIR -32 230 96 245 196 0 20 chr9 97537108 97537159 -20325468 + (TTCA)n Simple_repeat Simple_repeat 1 50 0 2234 109 0 0 chr9 97537411 97537705 -20324922 - AluSg SINE Alu -16 294 1 206 200 0 33 chr9 97538054 97538114 -20324513 + (TA)n Simple_repeat Simple_repeat 2 59 0 928 298 63 33 chr9 97538176 97538330 -20324297 - L2 LINE L2 0 3313 3165 2001 161 0 6 chr9 97538330 97538663 -20323964 - AluSx SINE Alu 0 312 1 928 298 63 33 chr9 97538663 97538968 -20323659 - L2 LINE L2 -148 3165 2840 289 282 81 24 chr9 97539065 97539189 -20323438 + L2 LINE L2 3182 3312 -1 209 83 28 0 chr9 97539191 97539227 -20323400 + (TGAA)n Simple_repeat Simple_repeat 3 39 0 257 228 171 32 chr9 97539498 97539621 -20323006 + MIR3 SINE MIR 10 149 -59 881 267 79 13 chr9 97540272 97540587 -20322040 - L2 LINE L2 -532 2782 2447 210 37 0 0 chr9 97540977 97541004 -20321623 + (TG)n Simple_repeat Simple_repeat 1 27 0 265 270 216 0 chr9 97541959 97542070 -20320557 + MIR SINE MIR 49 183 -79 325 303 30 61 chr9 97542892 97543024 -20319603 - MIR SINE MIR -112 150 23 290 212 85 0 chr9 97543525 97543605 -20319022 - MIR SINE MIR -70 138 64 185 257 284 9 chr9 97544639 97544748 -20317879 + MIR SINE MIR 23 161 -101 249 293 69 49 chr9 97544835 97544994 -20317633 - MIR3 SINE MIR -58 150 9 234 289 29 67 chr9 97545050 97545154 -20317473 - MIR SINE MIR -116 146 47 341 269 40 71 chr9 97545611 97545797 -20316830 + MIR3 SINE MIR 2 183 -67 515 313 75 50 chr9 97546013 97546253 -20316374 - MIR SINE MIR -1 261 16 220 229 281 0 chr9 97546381 97546477 -20316150 + MIR SINE MIR 29 151 -111 509 351 41 12 chr9 97546549 97546791 -20315836 - MIR SINE MIR 0 262 14 180 333 0 0 chr9 97546797 97546851 -20315776 + MIR SINE MIR 209 262 0 292 136 0 0 chr9 97547208 97547252 -20315375 - AluY SINE Alu -208 93 50 697 95 11 0 chr9 97547257 97547352 -20315275 + AluY SINE Alu 206 301 -10 199 319 195 49 chr9 97547763 97548111 -20314516 + L3 LINE CR1 1178 1576 -1 204 125 42 21 chr9 97548291 97548339 -20314288 + (TTCA)n Simple_repeat Simple_repeat 4 52 0 356 304 131 23 chr9 97548438 97548652 -20313975 + L3 LINE CR1 926 1162 -415 330 271 84 9 chr9 97548693 97548800 -20313827 - MIR SINE MIR -52 210 96 239 325 0 0 chr9 97548912 97548995 -20313632 + MIR SINE MIR 169 251 -11 1488 231 136 24 chr9 97549016 97549300 -20313327 - MLT1C LTR MaLR 0 467 120 1477 181 4 4 chr9 97549300 97549560 -20313067 + AluSx SINE Alu 1 260 -52 1488 231 136 24 chr9 97549560 97549695 -20312932 - MLT1C LTR MaLR -347 120 1 304 54 0 0 chr9 97549703 97549740 -20312887 - MADE1 DNA Mariner 0 80 44 210 301 237 13 chr9 97550142 97550298 -20312329 - MIR SINE MIR -21 241 51 223 284 75 0 chr9 97551018 97551085 -20311542 + MIR SINE MIR 44 115 -93 626 332 62 9 chr9 97551173 97551399 -20311228 + MIR SINE MIR 2 239 -23 275 347 35 80 chr9 97551436 97551635 -20310992 - L2 LINE L2 -129 3143 2954 224 272 66 33 chr9 97551668 97551805 -20310822 + L2 LINE L2 2865 3009 -263 322 365 46 50 chr9 97552858 97553099 -20309528 - L2 LINE L2 -213 3059 2820 3004 212 7 7 chr9 97554789 97555331 -20307296 - MLT1F LTR MaLR 0 542 1 234 318 41 59 chr9 97555351 97555521 -20307106 - L3b LINE CR1 -131 1452 1286 391 224 58 96 chr9 97556111 97556267 -20306360 + MIR SINE MIR 64 213 -49 378 301 110 17 chr9 97556968 97557141 -20305486 + MIR SINE MIR 12 200 -62 404 286 33 42 chr9 97558940 97559127 -20303500 + MIR SINE MIR 13 192 -70 333 316 60 8 chr9 97559773 97559906 -20302721 - L2 LINE L2 -10 3303 3164 467 333 90 54 chr9 97560488 97560913 -20301714 + L2 LINE L2 2716 3166 -106 1268 165 33 5 chr9 97560913 97561125 -20301502 - MER20 DNA MER1_type -1 218 1 467 333 90 54 chr9 97561125 97561236 -20301391 + L2 LINE L2 3166 3272 0 1608 213 49 39 chr9 97562071 97562460 -20300167 - MSTD LTR MaLR -3 393 1 400 281 14 43 chr9 97562675 97562814 -20299813 + L2 LINE L2 3175 3309 -4 879 275 156 29 chr9 97562878 97563296 -20299331 + MLT1J LTR MaLR 41 511 0 768 302 24 8 chr9 97563714 97563966 -20298661 + MIR SINE MIR 3 258 -4 602 191 164 7 chr9 97564604 97564756 -20297871 + MLT1B LTR MaLR 1 176 -214 222 205 36 0 chr9 97564766 97564849 -20297778 + CT-rich Low_complexity Low_complexity 1 86 0 1029 182 37 0 chr9 97564874 97565061 -20297566 + MLT1B LTR MaLR 197 390 0 1029 279 141 34 chr9 97566174 97566651 -20295976 - MLT1H LTR MaLR 0 549 22 758 328 20 4 chr9 97566965 97567209 -20295418 + MIR SINE MIR 3 250 -12 237 65 0 0 chr9 97567210 97567241 -20295386 + (TTA)n Simple_repeat Simple_repeat 2 32 0 247 320 13 0 chr9 97568343 97568421 -20294206 + L2 LINE L2 3226 3304 -9 211 194 0 0 chr9 97568475 97568511 -20294116 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 209 250 0 88 chr9 97569005 97569085 -20293542 + L2 LINE L2 3155 3227 -45 532 292 0 8 chr9 97569980 97570110 -20292517 - L2 LINE L2 -1 3312 3184 459 295 30 18 chr9 97570277 97570443 -20292184 + MIR SINE MIR 75 242 -20 237 324 0 14 chr9 97570534 97570605 -20292022 - L2 LINE L2 -189 3083 3014 252 279 221 17 chr9 97570617 97570789 -20291838 - MIR SINE MIR -10 252 46 704 305 69 16 chr9 97570861 97571107 -20291520 - MIR SINE MIR -1 261 3 186 321 54 77 chr9 97571155 97571323 -20291304 + MIR SINE MIR 48 211 -51 260 353 123 41 chr9 97571423 97571692 -20290935 + L3 LINE CR1 1227 1517 -60 580 299 73 54 chr9 97571695 97572349 -20290278 + L2 LINE L2 2601 3261 -52 454 244 79 8 chr9 97572914 97573041 -20289586 - MIR SINE MIR -97 165 30 224 293 0 17 chr9 97573150 97573208 -20289419 - MIR SINE MIR -165 97 41 218 389 0 0 chr9 97573503 97573575 -20289052 - L2 LINE L2 -67 3205 3134 203 265 20 0 chr9 97573813 97573862 -20288765 + L2 LINE L2 3223 3272 0 2146 119 6 13 chr9 97574876 97575188 -20287439 - AluSx SINE Alu -2 310 1 283 262 34 37 chr9 97575220 97575347 -20287280 - MIR SINE MIR -46 162 40 239 120 0 40 chr9 97575857 97575907 -20286720 + (GGAA)n Simple_repeat Simple_repeat 2 49 0 472 356 50 44 chr9 97576029 97576524 -20286103 - L2 LINE L2 -5 3308 2811 345 263 44 66 chr9 97577895 97578032 -20284595 - MIR3 SINE MIR -34 174 41 258 125 0 0 chr9 97578878 97578918 -20283709 - MLT2C2 LTR ERVL -2 462 423 333 109 0 0 chr9 97578927 97578982 -20283645 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 288 53 0 0 chr9 97579060 97579098 -20283529 + (TC)n Simple_repeat Simple_repeat 1 38 0 246 135 0 0 chr9 97579099 97579136 -20283491 + (TCTA)n Simple_repeat Simple_repeat 1 37 0 252 324 45 0 chr9 97579482 97579593 -20283034 - MIR SINE MIR -57 151 36 595 266 89 0 chr9 97579608 97579777 -20282850 + MER20 DNA MER1_type 27 210 -9 234 295 16 16 chr9 97579951 97580012 -20282615 - MIR SINE MIR -69 139 79 2096 141 0 3 chr9 97580336 97580634 -20281993 + AluSx SINE Alu 1 297 -15 605 318 33 9 chr9 97580727 97580938 -20281689 + MIR SINE MIR 11 226 -36 245 233 200 0 chr9 97581029 97581089 -20281538 + MIR3 SINE MIR 86 157 -51 688 326 25 17 chr9 97581893 97582132 -20280495 - MIR SINE MIR -15 247 7 245 192 58 0 chr9 97582230 97582282 -20280345 + MIR3 SINE MIR 153 207 -1 694 268 148 0 chr9 97582371 97582580 -20280047 - MIR SINE MIR -21 241 2 489 227 118 0 chr9 97583241 97583360 -20279267 + MER94 DNA DNA 1 133 -1 193 287 213 0 chr9 97583375 97583469 -20279158 - MIR SINE MIR -69 193 80 1965 116 60 0 chr9 97585104 97585389 -20277238 + AluSx SINE Alu 1 302 -10 256 360 81 26 chr9 97585518 97585790 -20276837 + L2 LINE L2 2624 2910 -404 313 250 0 29 chr9 97586150 97586254 -20276373 + (TGAA)n Simple_repeat Simple_repeat 1 101 0 240 300 0 0 chr9 97586310 97586390 -20276237 + (TGAA)n Simple_repeat Simple_repeat 2 81 0 670 230 63 37 chr9 97587725 97587916 -20274711 + MER58A DNA MER1_type 6 201 -23 480 95 27 0 chr9 97587921 97587995 -20274632 + L1PA16 LINE L1 6083 6158 -8 256 318 56 9 chr9 97588082 97588189 -20274438 + MIR SINE MIR 112 223 -39 255 175 193 0 chr9 97588760 97588817 -20273810 + L2 LINE L2 3155 3222 -50 201 213 0 0 chr9 97588969 97589016 -20273611 + (TGG)n Simple_repeat Simple_repeat 2 48 0 507 257 124 35 chr9 97589585 97589787 -20272840 - MIR SINE MIR -34 228 9 417 246 22 8 chr9 97589790 97589896 -20272731 + MER5A DNA MER1_type 4 112 -77 262 266 92 9 chr9 97590544 97590653 -20271974 - MIR SINE MIR -26 236 119 586 175 0 0 chr9 97591059 97591162 -20271465 - MLT1E LTR MaLR 0 593 491 2822 139 73 11 chr9 97591164 97591712 -20270915 + L1M4c LINE L1 1614 2195 -4189 480 324 81 11 chr9 97591725 97591910 -20270717 - MLT1E LTR MaLR -113 480 283 5175 116 20 28 chr9 97591911 97592884 -20269743 - L1PA13 LINE L1 0 6163 5152 7372 154 69 6 chr9 97592885 97594364 -20268263 - L1M4c LINE L1 -4790 1594 23 22 0 0 0 chr9 97596016 97596038 -20266589 + AT_rich Low_complexity Low_complexity 1 22 0 776 211 5 108 chr9 97596781 97597004 -20265623 + AluJb SINE Alu 83 282 -30 515 252 7 52 chr9 97597090 97597126 -20265501 - MER5B DNA MER1_type -4 174 138 1787 154 43 32 chr9 97597126 97597497 -20265130 - THE1C LTR MaLR 0 375 1 515 252 7 52 chr9 97597497 97597595 -20265032 - MER5B DNA MER1_type -40 138 46 11944 202 34 12 chr9 97597596 97600502 -20262125 - L1PA15 LINE L1 -13 6803 3786 243 61 0 0 chr9 97600502 97600535 -20262092 + (TG)n Simple_repeat Simple_repeat 2 34 0 11944 202 34 12 chr9 97600535 97601283 -20261344 - L1PA15 LINE L1 -3030 3786 3056 563 148 42 21 chr9 97601288 97601430 -20261197 - L1PA15 LINE L1 -4586 2201 2057 4254 241 41 89 chr9 97601439 97601656 -20260971 - L1PA12 LINE L1 -3745 3839 3613 2651 43 0 0 chr9 97601656 97601959 -20260668 - AluY SINE Alu -8 303 1 4254 241 41 89 chr9 97601959 97602164 -20260463 - L1PA12 LINE L1 -3971 3613 3400 681 56 0 0 chr9 97602164 97602254 -20260373 - L1PA5 LINE L1 -4 6150 6061 4254 241 41 89 chr9 97602254 97605148 -20257479 - L1PA12 LINE L1 -4184 3400 7 242 269 0 30 chr9 97605151 97605218 -20257409 - MER5B DNA MER1_type -110 68 4 391 268 185 0 chr9 97605264 97605421 -20257206 - MER5A DNA MER1_type 0 189 4 1030 151 92 0 chr9 97606031 97606216 -20256411 - MER66A LTR ERV1 0 478 277 209 208 0 21 chr9 97606264 97606312 -20256315 + (TTCA)n Simple_repeat Simple_repeat 1 47 0 206 284 0 27 chr9 97606935 97607009 -20255618 + L2 LINE L2 3241 3312 -1 483 319 27 38 chr9 97607406 97607669 -20254958 - MIR SINE MIR 0 262 3 450 301 151 16 chr9 97608559 97608878 -20253749 + L3 LINE CR1 959 1320 -257 583 256 34 94 chr9 97608888 97609122 -20253505 + MIR SINE MIR 37 256 -6 714 213 132 0 chr9 97609651 97609825 -20252802 + MIR SINE MIR 9 205 -57 499 268 20 46 chr9 97611326 97611479 -20251148 - MER5B DNA MER1_type 0 178 30 227 373 10 10 chr9 97611498 97611600 -20251027 + L2 LINE L2 2794 2895 -419 2099 110 27 137 chr9 97611714 97612195 -20250432 - MSTA LTR MaLR 0 428 1 209 302 94 47 chr9 97612251 97612400 -20250227 + L2 LINE L2 3158 3313 0 1787 195 41 27 chr9 97612580 97613022 -20249605 + LTR45B LTR ERV1 2 449 -40 255 286 39 0 chr9 97613099 97613176 -20249451 + L2 LINE L2 3193 3272 0 182 379 50 6 chr9 97614105 97614266 -20248361 - MIR SINE MIR -90 172 5 2298 106 47 36 chr9 97614396 97614756 -20247871 + THE1B LTR MaLR 1 364 0 255 275 111 53 chr9 97614842 97615031 -20247596 + L2 LINE L2 2599 2798 -516 219 309 0 15 chr9 97615125 97615193 -20247434 + MIR SINE MIR 188 254 -8 189 147 0 0 chr9 97615210 97615244 -20247383 + (TTA)n Simple_repeat Simple_repeat 3 36 0 307 347 106 47 chr9 97615315 97615589 -20247038 + L2 LINE L2 2973 3262 -10 1714 189 0 3 chr9 97615677 97615983 -20246644 + AluJo SINE Alu 1 305 -7 453 324 0 0 chr9 97616317 97616496 -20246131 + (CA)n Simple_repeat Simple_repeat 2 180 0 327 270 0 0 chr9 97616526 97616762 -20245865 + (CA)n Simple_repeat Simple_repeat 1 236 0 255 160 0 0 chr9 97616767 97616817 -20245810 - MER4-int LTR ERV1 -5438 1160 1111 301 313 53 40 chr9 97616862 97617012 -20245615 - L2 LINE L2 -4 3309 3158 497 252 48 14 chr9 97617077 97617224 -20245403 - MIR SINE MIR -12 250 99 271 273 104 52 chr9 97617722 97617876 -20244751 - MIR3 SINE MIR -35 173 12 404 274 43 39 chr9 97618301 97618459 -20244168 - Tigger8 DNA MER2_type -24 642 481 2390 159 2 44 chr9 97618459 97618892 -20243735 + MER47B DNA MER2_type 1 415 -3 404 274 43 39 chr9 97618892 97618967 -20243660 - Tigger8 DNA MER2_type -185 481 408 275 411 8 8 chr9 97619095 97619224 -20243403 - MIR SINE MIR -63 145 17 969 188 11 0 chr9 97619237 97619423 -20243204 - MER5A DNA MER1_type -1 188 1 300 321 161 0 chr9 97619442 97619604 -20243023 - MIR SINE MIR -51 211 24 704 296 39 0 chr9 97619628 97619888 -20242739 - Tigger8 DNA MER2_type -305 361 92 363 299 71 19 chr9 97620471 97620625 -20242002 + MIR SINE MIR 31 192 -70 294 193 109 144 chr9 97622205 97622407 -20240220 - MIR SINE MIR 0 262 68 788 304 22 0 chr9 97622555 97622782 -20239845 + MIR SINE MIR 31 262 0 1704 186 0 4 chr9 97623461 97623740 -20238887 + AluJo SINE Alu 1 278 -34 31 44 0 0 chr9 97623791 97623836 -20238791 + AT_rich Low_complexity Low_complexity 1 45 0 234 339 6 27 chr9 97624968 97625151 -20237476 + (CAT)n Simple_repeat Simple_repeat 2 180 0 368 308 62 65 chr9 97625305 97625646 -20236981 + MLT1K LTR MaLR 197 536 -52 268 309 55 18 chr9 97626095 97626205 -20236422 + MIR SINE MIR 31 144 -64 576 236 16 16 chr9 97626346 97626473 -20236154 - MIR3 SINE MIR -6 202 76 22 0 0 0 chr9 97626521 97626543 -20236084 + AT_rich Low_complexity Low_complexity 1 22 0 218 293 283 0 chr9 97626604 97626710 -20235917 + L2 LINE L2 3136 3271 -1 2013 123 0 11 chr9 97626830 97627114 -20235513 + AluSx SINE Alu 1 281 -31 459 0 0 0 chr9 97627114 97627165 -20235462 + (CA)n Simple_repeat Simple_repeat 2 52 0 234 0 0 0 chr9 97627466 97627492 -20235135 + (T)n Simple_repeat Simple_repeat 1 26 0 367 350 125 10 chr9 97627924 97628124 -20234503 + MIR SINE MIR 28 250 -12 539 283 51 28 chr9 97628199 97628376 -20234251 - MER5A DNA MER1_type 0 189 9 192 335 112 13 chr9 97628513 97628665 -20233962 - L3b LINE CR1 -197 1386 1220 320 337 130 18 chr9 97628763 97628932 -20233695 - MIR3 SINE MIR -5 203 16 307 269 74 0 chr9 97629106 97629214 -20233413 - MIR SINE MIR -94 168 53 246 175 35 18 chr9 97629227 97629284 -20233343 - L2 LINE L2 0 3313 3256 359 336 141 14 chr9 97630095 97630315 -20232312 - MIR SINE MIR -13 249 2 346 300 0 20 chr9 97630527 97630627 -20232000 + L1MC4 LINE L1 6614 6711 -1331 333 68 0 0 chr9 97630640 97630684 -20231943 + (TA)n Simple_repeat Simple_repeat 1 44 0 250 255 0 0 chr9 97630724 97630775 -20231852 + L2 LINE L2 3253 3303 -10 210 205 39 0 chr9 97630792 97630870 -20231757 + CT-rich Low_complexity Low_complexity 2 82 0 348 313 8 0 chr9 97631456 97631584 -20231043 - Charlie8 DNA MER1_type -2193 224 96 261 323 161 32 chr9 97632018 97632173 -20230454 + MIR SINE MIR 14 188 -74 287 344 8 23 chr9 97632219 97632350 -20230277 + MER5B DNA MER1_type 1 129 -49 522 225 72 0 chr9 97632596 97632707 -20229920 + L2 LINE L2 3187 3305 -8 357 309 26 87 chr9 97634224 97634602 -20228025 - MLT1I LTR MaLR -8 401 47 294 194 0 0 chr9 97636188 97636255 -20226372 + (TG)n Simple_repeat Simple_repeat 2 68 0 2582 61 0 0 chr9 97637092 97637402 -20225225 + AluY SINE Alu 1 310 -1 452 279 0 0 chr9 97638291 97638402 -20224225 + L2 LINE L2 3194 3304 -9 1328 214 82 0 chr9 97640265 97640545 -20222082 + AluJo SINE Alu 1 303 -9 23 0 0 0 chr9 97640565 97640588 -20222039 + AT_rich Low_complexity Low_complexity 1 23 0 229 329 0 13 chr9 97640602 97640678 -20221949 - MIR SINE MIR -168 94 20 2546 113 10 0 chr9 97640689 97641077 -20221550 - L1PA16 LINE L1 0 6166 5775 1167 279 61 73 chr9 97641130 97641304 -20221323 - L1MC4 LINE L1 0 8042 7867 2513 47 0 7 chr9 97641304 97641601 -20221026 + AluY SINE Alu 1 295 -16 1167 279 61 73 chr9 97641601 97642360 -20220267 - L1MC4 LINE L1 -175 7867 7120 414 0 0 0 chr9 97642401 97642447 -20220180 + (TG)n Simple_repeat Simple_repeat 2 47 0 195 42 0 0 chr9 97643283 97643307 -20219320 + (CGGGG)n Simple_repeat Simple_repeat 5 28 0 1128 213 45 0 chr9 97643828 97644049 -20218578 - MIR SINE MIR 0 262 32 316 297 137 80 chr9 97644401 97644543 -20218084 + L2 LINE L2 2998 3157 -115 929 253 14 5 chr9 97644543 97644764 -20217863 + MER58A DNA MER1_type 1 223 -1 316 297 137 80 chr9 97644764 97644833 -20217794 + L2 LINE L2 3157 3221 -51 517 349 91 43 chr9 97645849 97646334 -20216293 - L3 LINE CR1 -4 1573 1066 515 226 65 13 chr9 97647580 97647735 -20214892 - MER104 DNA Tc2 -14 166 4 2170 186 72 16 chr9 97648001 97648500 -20214127 + L1MB5 LINE L1 5648 6174 0 202 316 102 0 chr9 97649432 97649530 -20213097 + L2 LINE L2 2918 3025 -247 1684 45 0 0 chr9 97649619 97649817 -20212810 + AluY SINE Alu 105 302 -9 820 158 103 7 chr9 97649865 97650011 -20212616 + FRAM SINE Alu 1 158 -18 611 284 98 77 chr9 97650436 97650914 -20211713 + L1MEd LINE L1 668 1155 -4964 911 265 61 40 chr9 97652248 97652675 -20209952 - LTR16A1 LTR ERVL -21 436 1 244 167 14 28 chr9 97653004 97653076 -20209551 - L1MA7 LINE L1 0 6291 6221 * 2163 167 2 12 chr9 97653074 97653475 -20209152 + L1M2 LINE L1 5407 5803 -488 302 173 0 0 chr9 97653510 97653562 -20209065 - L2 LINE L2 0 3313 3262 284 390 52 0 chr9 97653889 97654025 -20208602 - L2 LINE L2 -14 3258 3116 687 314 152 17 chr9 97654280 97654701 -20207926 - L2 LINE L2 -457 2857 2380 230 376 67 18 chr9 97654743 97654908 -20207719 - L2 LINE L2 -224 3048 2876 234 0 0 0 chr9 97655067 97655093 -20207534 + (TTG)n Simple_repeat Simple_repeat 2 27 0 951 179 27 5 chr9 97655681 97655865 -20206762 - MER58A DNA MER1_type 0 224 37 2003 135 4 0 chr9 97656159 97656460 -20206167 - AluSx SINE Alu 0 302 1 5530 142 7 0 chr9 97656658 97657607 -20205020 + L1PA16 LINE L1 5203 6158 -8 684 328 79 14 chr9 97657722 97658091 -20204536 - LTR16C LTR ERVL -2 489 97 622 267 63 77 chr9 97658828 97659113 -20203514 + L3 LINE CR1 1265 1545 -32 361 271 239 11 chr9 97659119 97659307 -20203320 + MIR SINE MIR 31 261 -1 486 316 5 58 chr9 97659818 97660024 -20202603 - MIR SINE MIR -3 259 65 382 288 30 78 chr9 97660436 97660466 -20202161 + MIR SINE MIR 7 37 -225 2194 97 0 7 chr9 97660466 97660765 -20201862 + AluSc SINE Alu 1 297 -12 382 288 30 78 chr9 97660765 97660938 -20201689 + MIR SINE MIR 37 210 -52 250 311 48 19 chr9 97661743 97661846 -20200781 + MIR SINE MIR 79 184 -78 330 341 132 44 chr9 97661877 97662264 -20200363 - L2 LINE L2 -36 3277 2857 426 296 113 42 chr9 97663020 97663205 -20199422 + MIR3 SINE MIR 1 199 -9 227 216 0 20 chr9 97663438 97663489 -20199138 - MIR SINE MIR -130 132 83 201 256 116 23 chr9 97665438 97665524 -20197103 + MIR SINE MIR 85 178 -84 810 254 141 0 chr9 97665986 97666269 -20196358 - MER5C DNA MER1_type -1 323 1 542 248 12 31 chr9 97666351 97666512 -20196115 + L2 LINE L2 3138 3295 -18 455 320 105 48 chr9 97666775 97667271 -20195356 + L1MEd LINE L1 889 1356 -1134 2648 68 2 92 chr9 97667271 97667685 -20194942 + MER51B LTR ERV1 1 377 0 4139 135 16 44 chr9 97667685 97668393 -20194234 + LTR8 LTR ERV1 3 691 0 455 320 105 48 chr9 97668393 97668628 -20193999 + L1MEd LINE L1 1355 1752 -738 626 271 106 61 chr9 97668898 97669371 -20193256 + L1MEd LINE L1 2093 2586 -3543 2170 98 30 3 chr9 97669546 97669841 -20192786 + AluSg SINE Alu 1 303 -7 761 215 11 54 chr9 97669971 97670157 -20192470 - MER5B DNA MER1_type 0 178 1 263 307 112 30 chr9 97670702 97670871 -20191756 + MIR SINE MIR 28 262 0 393 330 145 36 chr9 97671579 97671937 -20190690 - L2 LINE L2 -11 3261 2865 966 165 121 15 chr9 97671983 97672256 -20190371 + MER33 DNA MER1_type 1 302 -22 256 311 33 36 chr9 97672457 97672763 -20189864 + L1M4 LINE L1 4096 4400 -1746 2119 196 14 7 chr9 97672862 97673307 -20189320 - L1MD1 LINE L1 -1 6224 5777 1778 208 25 6 chr9 97673310 97673666 -20188961 + MLT1A1 LTR MaLR 3 365 0 6516 241 73 2 chr9 97673666 97675273 -20187354 + MLT1A1-int LTR MaLR 1 1722 -13 1670 215 25 8 chr9 97675284 97675608 -20187019 + MLT1A1 LTR MaLR 1 333 -32 1868 165 42 0 chr9 97675608 97675942 -20186685 + MER7A DNA MER2_type 1 346 0 1670 215 25 8 chr9 97675942 97675975 -20186652 + MLT1A1 LTR MaLR 333 364 -1 2359 210 20 4 chr9 97675975 97676665 -20185962 - L1MD1 LINE L1 -444 5781 5082 301 191 113 9 chr9 97676743 97676858 -20185769 - L1MD1 LINE L1 -1052 5077 4951 299 157 14 0 chr9 97676863 97676933 -20185694 + CT-rich Low_complexity Low_complexity 2 72 0 1968 250 34 24 chr9 97676947 97677706 -20184921 - L1MD1 LINE L1 -1198 4931 4165 1130 263 36 26 chr9 97677692 97678076 -20184551 - L1MD1 LINE L1 -4541 1588 1201 * 1041 292 106 18 chr9 97678077 97678588 -20184039 + L1MC4a LINE L1 5423 5978 -1830 380 306 61 28 chr9 97678969 97679149 -20183478 + MIR SINE MIR 77 262 0 1529 154 42 0 chr9 97679364 97679624 -20183003 - L1PA15 LINE L1 -1 6164 5894 186 307 93 13 chr9 97680239 97680314 -20182313 - L3b LINE CR1 -3 1580 1500 210 219 0 0 chr9 97680636 97680677 -20181950 + (TG)n Simple_repeat Simple_repeat 2 42 0 752 244 196 29 chr9 97680766 97681082 -20181545 + MLT1H1 LTR MaLR 49 417 -138 1560 259 52 72 chr9 97681139 97681435 -20181192 + L1ME LINE L1 8 308 -5762 2373 85 0 0 chr9 97681435 97681730 -20180897 + AluSg SINE Alu 1 295 -15 1560 259 52 72 chr9 97681730 97682124 -20180503 + L1ME LINE L1 308 684 -5386 253 293 47 19 chr9 97682146 97682252 -20180375 - MIR SINE MIR -6 256 148 198 103 0 0 chr9 97682365 97682394 -20180233 + (TAA)n Simple_repeat Simple_repeat 2 30 0 436 300 29 0 chr9 97682807 97682947 -20179680 - MIR SINE MIR -104 158 15 30 45 0 0 chr9 97683903 97683947 -20178680 + AT_rich Low_complexity Low_complexity 1 44 0 1378 290 75 47 chr9 97684587 97685079 -20177548 + L1MEc LINE L1 679 1156 -5059 2344 115 0 0 chr9 97685079 97685392 -20177235 + AluSq SINE Alu 1 313 0 1378 290 75 47 chr9 97685392 97685507 -20177120 + L1MEc LINE L1 1156 1266 -4949 285 29 0 0 chr9 97685507 97685541 -20177086 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 1378 290 75 47 chr9 97685541 97687051 -20175576 + L1MEc LINE L1 1266 2812 -3403 399 306 81 5 chr9 97688504 97688726 -20173901 - L1MD1 LINE L1 -4908 1211 973 2286 117 122 8 chr9 97689509 97689893 -20172734 + MSTA LTR MaLR 1 428 0 337 306 218 5 chr9 97689903 97690096 -20172531 - MIR SINE MIR 0 262 29 195 162 0 0 chr9 97691250 97691287 -20171340 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 288 262 119 0 chr9 97691298 97691382 -20171245 - L1MC4a LINE L1 -1884 5924 5831 260 282 14 0 chr9 97691398 97691469 -20171158 + MIR SINE MIR 84 155 -107 300 143 0 0 chr9 97691791 97691847 -20170780 + (TG)n Simple_repeat Simple_repeat 1 56 0 298 306 139 23 chr9 97691968 97692141 -20170486 + MIR SINE MIR 20 212 -50 189 0 0 0 chr9 97693380 97693401 -20169226 + (A)n Simple_repeat Simple_repeat 1 21 0 1836 171 0 0 chr9 97693494 97693793 -20168834 - AluSx SINE Alu -5 307 9 434 344 57 45 chr9 97693800 97694114 -20168513 + L2 LINE L2 2510 2827 -487 367 236 96 45 chr9 97694212 97694390 -20168237 + L1MA5 LINE L1 556 742 -6426 7334 191 9 48 chr9 97694484 97695898 -20166729 + L1MA5 LINE L1 643 2001 -5167 730 136 0 107 chr9 97695906 97696046 -20166581 + FLAM_C SINE Alu 1 125 -18 3166 217 35 49 chr9 97696064 97697024 -20165603 + L1MA5 LINE L1 1997 2943 -4225 * 7031 181 16 51 chr9 97697004 97697533 -20165094 + L1MA5 LINE L1 4734 5280 -2041 231 36 0 0 chr9 97697533 97697561 -20165066 + (CA)n Simple_repeat Simple_repeat 2 29 0 7031 181 16 51 chr9 97697561 97698097 -20164530 + L1MA5 LINE L1 5280 5833 -1488 1981 117 0 31 chr9 97698097 97698438 -20164189 + AluSg SINE Alu 1 332 0 7031 181 16 51 chr9 97698438 97699297 -20163330 + L1MA5 LINE L1 5833 6592 -729 4276 155 21 11 chr9 97699407 97700167 -20162460 + L1MA5 LINE L1 6552 7319 -2 210 37 0 0 chr9 97700771 97700798 -20161829 + (A)n Simple_repeat Simple_repeat 1 27 0 246 319 107 34 chr9 97700900 97701089 -20161538 - MIR SINE MIR -56 206 3 418 181 170 11 chr9 97701141 97701235 -20161392 - L2 LINE L2 -13 3259 3151 237 333 180 0 chr9 97701584 97701734 -20160893 + MIR3 SINE MIR 29 205 -3 352 261 32 70 chr9 97702109 97702266 -20160361 - MIR3 SINE MIR -18 190 40 23 54 0 0 chr9 97702522 97702559 -20160068 + AT_rich Low_complexity Low_complexity 1 37 0 293 275 64 9 chr9 97702827 97702936 -20159691 + MIR SINE MIR 85 199 -63 188 268 225 0 chr9 97702967 97703038 -20159589 - MIR SINE MIR -50 212 126 6448 26 0 5 chr9 97703163 97703921 -20158706 - L1PA3 LINE L1 0 6155 5402 788 249 28 18 chr9 97703924 97704141 -20158486 + MER20 DNA MER1_type 1 219 0 190 300 54 46 chr9 97704367 97704497 -20158130 + L2 LINE L2 3140 3270 -43 184 336 80 56 chr9 97704525 97704650 -20157977 - MIR SINE MIR -86 176 49 289 242 13 55 chr9 97704909 97705026 -20157601 + MIR SINE MIR 73 183 -62 2997 222 28 0 chr9 97705041 97705676 -20156951 + MER82 DNA MER2_type 1 653 0 1266 252 85 25 chr9 97705709 97706017 -20156610 + L1ME3A LINE L1 5325 5613 -557 1982 132 3 35 chr9 97706017 97706335 -20156292 + AluSx SINE Alu 1 308 -4 1266 252 85 25 chr9 97706335 97706774 -20155853 + L1ME3A LINE L1 5613 6170 0 312 369 56 12 chr9 97706854 97707014 -20155613 + MER5B DNA MER1_type 3 169 -9 204 209 174 23 chr9 97707107 97707193 -20155434 - MIR SINE MIR -65 143 63 * 363 282 21 21 chr9 97707190 97707330 -20155297 - MIR SINE MIR -54 208 69 405 344 0 8 chr9 97709358 97709489 -20153138 + MIR SINE MIR 20 149 -113 226 390 67 34 chr9 97709742 97710011 -20152616 + L2 LINE L2 2430 2707 -607 910 189 0 7 chr9 97710143 97710296 -20152331 + MER20 DNA MER1_type 67 218 -1 333 0 0 0 chr9 97711023 97711060 -20151567 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 22 35 0 0 chr9 97711241 97711270 -20151357 + AT_rich Low_complexity Low_complexity 1 29 0 206 195 177 88 chr9 97711776 97711889 -20150738 - MIR SINE MIR -16 246 124 402 338 48 0 chr9 97712082 97712227 -20150400 - MIR SINE MIR -71 191 40 444 314 12 35 chr9 97713349 97713518 -20149109 - MIR3 SINE MIR -42 166 2 508 254 102 29 chr9 97714227 97714432 -20148195 - MIR SINE MIR -3 259 40 2425 76 0 0 chr9 97714502 97714805 -20147822 - AluY SINE Alu -8 303 1 632 296 138 62 chr9 97714834 97715365 -20147262 - L2 LINE L2 0 3313 2731 1318 210 96 13 chr9 97715648 97715962 -20146665 - MER58B DNA MER1_type -1 340 1 2581 127 4 67 chr9 97716099 97716549 -20146078 - MSTB LTR MaLR -4 422 1 1382 306 59 2 chr9 97716618 97717078 -20145549 + LTR16C LTR ERVL 2 487 -4 496 359 43 31 chr9 97717189 97717515 -20145112 + L3 LINE CR1 1245 1574 -3 408 366 12 6 chr9 97718232 97718393 -20144234 + MIR3 SINE MIR 39 200 -8 189 74 0 0 chr9 97718479 97718506 -20144121 + (CA)n Simple_repeat Simple_repeat 2 28 0 284 143 82 0 chr9 97718822 97718871 -20143756 + MER63A DNA MER1_type 5 57 0 249 333 14 0 chr9 97718904 97718976 -20143651 + MER63A DNA MER1_type 133 205 -5 2412 83 3 0 chr9 97719381 97719683 -20142944 + AluY SINE Alu 1 303 -8 1013 193 222 0 chr9 97720022 97720036 -20142591 + L1M4 LINE L1 3599 3609 -2537 1348 183 43 75 chr9 97720036 97720358 -20142269 + AluJb SINE Alu 1 312 0 1013 193 222 0 chr9 97720358 97720649 -20141978 + L1M4 LINE L1 3609 3972 -2174 404 301 97 15 chr9 97720871 97721077 -20141550 + MIR SINE MIR 40 262 0 368 353 8 16 chr9 97721215 97721337 -20141290 + MIR3 SINE MIR 85 205 -3 537 243 86 7 chr9 97722268 97722420 -20140207 - MER20 DNA MER1_type 0 219 56 1265 131 10 0 chr9 97722478 97722684 -20139943 + L1MA3 LINE L1 6090 6297 -8 276 411 68 28 chr9 97722712 97722960 -20139667 + L2 LINE L2 2973 3230 -42 329 241 58 88 chr9 97723077 97723214 -20139413 - MLT1K LTR MaLR -4 584 452 300 261 23 69 chr9 97725399 97725529 -20137098 + MIR SINE MIR 45 168 -94 185 313 115 31 chr9 97725682 97725778 -20136849 + MIR SINE MIR 119 222 -40 287 288 80 12 chr9 97726181 97726308 -20136319 + MER5A DNA MER1_type 12 161 -28 439 322 29 0 chr9 97726471 97726642 -20135985 + MIR SINE MIR 13 188 -74 690 315 64 62 chr9 97726682 97727323 -20135304 + L1MEc LINE L1 44 685 -5711 697 301 34 5 chr9 97727339 97727545 -20135082 + MER58A DNA MER1_type 12 223 -1 617 279 97 68 chr9 97727720 97727759 -20134868 + L1MEc LINE L1 805 841 -5555 1691 193 6 10 chr9 97727759 97728070 -20134557 + AluJo SINE Alu 1 310 -2 617 279 97 68 chr9 97728070 97729140 -20133487 + L1MEc LINE L1 841 1934 -4462 1150 374 3 60 chr9 97729191 97729509 -20133118 + AluJo SINE Alu 1 300 -2 224 316 0 0 chr9 97729691 97729748 -20132879 - L2 LINE L2 -61 3211 3155 252 348 0 76 chr9 97730003 97730121 -20132506 + L2 LINE L2 2255 2363 -951 2159 95 3 3 chr9 97730357 97730674 -20131953 - AluSq SINE Alu 0 317 1 281 346 148 4 chr9 97731095 97731358 -20131269 + L2 LINE L2 2466 2766 -548 260 280 80 30 chr9 97731425 97731525 -20131102 + L2 LINE L2 3155 3259 -13 2254 129 0 0 chr9 97732448 97732757 -20129870 + AluSx SINE Alu 1 309 -3 317 318 84 50 chr9 97732791 97733030 -20129597 + L2 LINE L2 2836 3082 -190 419 297 22 49 chr9 97733553 97733738 -20128889 - MLT1K LTR MaLR -250 338 159 216 250 57 93 chr9 97734132 97734272 -20128355 + MIR3 SINE MIR 2 136 -72 200 89 89 0 chr9 97734876 97734932 -20127695 + (TTAA)n Simple_repeat Simple_repeat 3 63 0 481 261 45 60 chr9 97734960 97735159 -20127468 - L2 LINE L2 0 3313 3118 2223 55 19 58 chr9 97735442 97735753 -20126874 - AluY SINE Alu -12 299 1 417 313 28 0 chr9 97736358 97736540 -20126087 - MER117 DNA MER1_type -6 191 5 313 287 25 0 chr9 97737094 97737216 -20125411 + L1MA9 LINE L1 6150 6274 -38 212 272 175 48 chr9 97737281 97737384 -20125243 + MIR3 SINE MIR 13 128 -80 3747 114 96 85 chr9 97738149 97739542 -20123085 - pTR5 LTR ERV1 0 2438 66 417 278 111 14 chr9 97740371 97740515 -20122112 - MIR3 SINE MIR -30 178 21 205 236 106 57 chr9 97740677 97740800 -20121827 - L2 LINE L2 -75 3238 3110 189 0 0 0 chr9 97741659 97741680 -20120947 + (TG)n Simple_repeat Simple_repeat 2 22 0 345 131 0 0 chr9 97741797 97741858 -20120769 + (GA)n Simple_repeat Simple_repeat 2 62 0 21 0 0 0 chr9 97742702 97742723 -20119904 + AT_rich Low_complexity Low_complexity 1 21 0 261 273 68 0 chr9 97743162 97743250 -20119377 - MIR SINE MIR -73 189 96 294 345 49 28 chr9 97743404 97743546 -20119081 + MIR SINE MIR 20 164 -98 225 65 0 0 chr9 97743558 97743589 -20119038 + (AAATG)n Simple_repeat Simple_repeat 5 35 0 2158 123 3 22 chr9 97743678 97743996 -20118631 - AluSx SINE Alu 0 312 1 1648 280 38 19 chr9 97744043 97744575 -20118052 - MLT1F LTR MaLR 0 542 1 210 378 13 20 chr9 97744927 97745078 -20117549 - MER5A DNA MER1_type 0 189 40 192 315 68 68 chr9 97744954 97745100 -20117527 + MER5A DNA MER1_type 38 183 -6 * 1742 178 11 0 chr9 97745866 97746147 -20116480 + AluJb SINE Alu 12 295 -17 726 293 34 21 chr9 97746256 97746495 -20116132 + MIR SINE MIR 8 249 -13 282 298 60 73 chr9 97746503 97746721 -20115906 - L2 LINE L2 -248 3024 2810 222 299 222 7 chr9 97747616 97747760 -20114867 - MIR SINE MIR -67 195 21 324 295 42 11 chr9 97747788 97747883 -20114744 + L2 LINE L2 3172 3269 -3 357 323 35 93 chr9 97748614 97748840 -20113787 + MIR SINE MIR 49 261 -1 1792 155 3 65 chr9 97748904 97749226 -20113401 + AluSx SINE Alu 1 302 -10 346 319 90 69 chr9 97749301 97749636 -20112991 - L2 LINE L2 0 3272 2931 652 239 9 74 chr9 97749697 97749927 -20112700 - MER20 DNA MER1_type -4 215 1 339 318 0 0 chr9 97751381 97751560 -20111067 + (TA)n Simple_repeat Simple_repeat 1 179 0 207 232 61 49 chr9 97751504 97751668 -20110959 + (TCTA)n Simple_repeat Simple_repeat 4 169 0 * 10684 42 2 1 chr9 97753813 97755897 -20106730 - L1PA5 LINE L1 -1 6153 4069 193 356 0 0 chr9 97755897 97755970 -20106657 + MIR SINE MIR 131 203 -59 23 0 0 0 chr9 97757341 97757364 -20105263 + AT_rich Low_complexity Low_complexity 1 23 0 268 333 89 24 chr9 97757411 97757534 -20105093 - L2 LINE L2 -4 3268 3138 277 329 132 18 chr9 97757852 97758019 -20104608 + MIR SINE MIR 59 244 -18 239 364 29 0 chr9 97758053 97758202 -20104425 + MIR SINE MIR 29 185 -64 235 357 0 0 chr9 97758213 97758297 -20104330 - L2 LINE L2 0 3272 3189 22 0 0 0 chr9 97758409 97758431 -20104196 + AT_rich Low_complexity Low_complexity 1 22 0 2368 119 19 8 chr9 97759509 97759880 -20102747 - THE1C LTR MaLR 0 375 1 457 204 97 0 chr9 97760066 97760159 -20102468 - MER5A DNA MER1_type -79 110 9 946 183 23 0 chr9 97760567 97760742 -20101885 - MSTD LTR MaLR 0 396 218 210 323 76 62 chr9 97760911 97761199 -20101428 + L2 LINE L2 2557 2848 -466 1969 188 26 36 chr9 97761266 97761307 -20101320 - MLT2D LTR ERVL 0 414 374 333 0 0 0 chr9 97761307 97761344 -20101283 + (TG)n Simple_repeat Simple_repeat 2 38 0 1969 188 26 36 chr9 97761344 97761718 -20100909 - MLT2D LTR ERVL -40 374 3 639 208 202 11 chr9 97762070 97762248 -20100379 + MIR SINE MIR 41 252 -10 686 176 0 80 chr9 97762443 97762619 -20100008 + Tigger1 DNA MER2_type 2 163 -2255 416 83 0 14 chr9 97762600 97762672 -20099955 + Tigger1 DNA MER2_type 2202 2272 -146 * 488 162 0 68 chr9 97762675 97762792 -20099835 + Tigger1 DNA MER2_type 55 163 -2255 * 1278 132 0 5 chr9 97762778 97762991 -20099636 + Tigger1 DNA MER2_type 2207 2418 0 1996 116 0 4 chr9 97763116 97763391 -20099236 + AluSg SINE Alu 1 274 -36 265 324 122 11 chr9 97763623 97763797 -20098830 + MIR SINE MIR 19 210 -52 2106 134 3 0 chr9 97763975 97764281 -20098346 - AluSx SINE Alu -5 307 1 251 211 133 44 chr9 97764370 97764460 -20098167 + MER5B DNA MER1_type 1 98 -80 2111 105 0 20 chr9 97764497 97764802 -20097825 + AluSq SINE Alu 1 299 -14 384 214 220 0 chr9 97765371 97765539 -20097088 - L1MC4 LINE L1 -2 8040 7836 190 364 0 0 chr9 97766265 97766353 -20096274 + MIR SINE MIR 146 233 -29 296 259 0 0 chr9 97766745 97766799 -20095828 + L2 LINE L2 3203 3256 -16 246 350 0 0 chr9 97766988 97767048 -20095579 - L2 LINE L2 -10 3262 3203 1768 140 0 0 chr9 97767097 97767354 -20095273 - AluSx SINE Alu -17 295 39 24 103 0 0 chr9 97767615 97767702 -20094925 + AT_rich Low_complexity Low_complexity 1 87 0 312 137 0 0 chr9 97767842 97767893 -20094734 + (CA)n Simple_repeat Simple_repeat 2 52 0 221 233 0 0 chr9 97768101 97768144 -20094483 + (TG)n Simple_repeat Simple_repeat 2 44 0 1183 212 40 54 chr9 97769258 97769632 -20092995 + MLT1A2 LTR MaLR 3 374 0 243 88 0 0 chr9 97769698 97769732 -20092895 + (TCC)n Simple_repeat Simple_repeat 3 36 0 206 318 8 24 chr9 97769815 97769941 -20092686 + CT-rich Low_complexity Low_complexity 3 126 0 208 185 22 43 chr9 97769961 97770053 -20092574 + CT-rich Low_complexity Low_complexity 1 90 0 301 289 141 19 chr9 97770546 97770702 -20091925 - MIR SINE MIR 0 262 88 447 295 36 0 chr9 97770829 97770968 -20091659 - MIR SINE MIR -45 217 74 21 57 0 0 chr9 97771234 97771269 -20091358 + AT_rich Low_complexity Low_complexity 1 35 0 31 0 0 0 chr9 97771482 97771513 -20091114 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr9 97771688 97771712 -20090915 + AT_rich Low_complexity Low_complexity 1 24 0 2000 138 21 44 chr9 97771974 97772358 -20090269 + THE1C LTR MaLR 1 375 0 659 257 58 35 chr9 97773124 97773350 -20089277 - MIR SINE MIR -2 260 30 21 57 0 0 chr9 97773414 97773449 -20089178 + AT_rich Low_complexity Low_complexity 1 35 0 248 56 28 0 chr9 97773953 97773989 -20088638 - MLT1I LTR MaLR -279 130 94 198 340 40 10 chr9 97775320 97775420 -20087207 - MIR SINE MIR -76 132 30 22 70 0 0 chr9 97776544 97776587 -20086040 + AT_rich Low_complexity Low_complexity 1 43 0 247 161 81 0 chr9 97776587 97776649 -20085978 + HSMAR1 DNA Mariner 1221 1287 0 204 329 14 14 chr9 97777392 97777465 -20085162 - MIR SINE MIR -161 101 29 483 288 98 16 chr9 97778124 97778308 -20084319 - MIR SINE MIR -11 251 53 188 297 216 0 chr9 97778419 97778493 -20084134 - MIR SINE MIR -74 134 45 261 0 0 0 chr9 97779084 97779113 -20083514 + (T)n Simple_repeat Simple_repeat 1 29 0 265 382 115 7 chr9 97779935 97780152 -20082475 - MIR SINE MIR -23 239 3 294 261 68 99 chr9 97781279 97781440 -20081187 - MIR3 SINE MIR -12 196 41 225 368 0 28 chr9 97782391 97782497 -20080130 - L2 LINE L2 -207 3065 2963 300 111 0 0 chr9 97782506 97782551 -20080076 + (TG)n Simple_repeat Simple_repeat 2 46 0 3988 254 76 65 chr9 97782960 97785125 -20077502 + L1MB8 LINE L1 4 2160 -4799 3416 185 59 1 chr9 97785125 97785866 -20076761 + L1MA7 LINE L1 5508 6291 0 3988 254 76 65 chr9 97785866 97786125 -20076502 + L1MB8 LINE L1 2160 2415 -4544 4493 224 23 27 chr9 97786423 97788578 -20074049 + L1MB8 LINE L1 4806 6951 -38 317 169 26 0 chr9 97790261 97790338 -20072289 + CT-rich Low_complexity Low_complexity 3 81 0 2067 146 46 3 chr9 97790667 97790990 -20071637 + MER1B DNA MER1_type 1 337 0 373 307 22 44 chr9 97791367 97791504 -20071123 - MIR SINE MIR -125 137 4 202 333 54 18 chr9 97792809 97792920 -20069707 - L2 LINE L2 0 3313 3199 332 346 30 23 chr9 97792983 97793116 -20069511 - L2 LINE L2 -2 3270 3137 498 269 37 125 chr9 97793206 97793335 -20069292 + L2 LINE L2 2770 2909 -404 940 157 91 52 chr9 97793335 97793545 -20069082 - MER20 DNA MER1_type 0 219 2 498 269 37 125 chr9 97793545 97793647 -20068980 + L2 LINE L2 2909 3018 -295 1365 114 27 0 chr9 97793647 97793867 -20068760 + L1MA1 LINE L1 6072 6297 -5 498 269 37 125 chr9 97793867 97794159 -20068468 + L2 LINE L2 3018 3313 0 2364 102 13 39 chr9 97794383 97794707 -20067920 + THE1C LTR MaLR 2 316 -59 203 0 0 36 chr9 97794707 97794735 -20067892 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 2364 102 13 39 chr9 97794735 97794794 -20067833 + THE1C LTR MaLR 316 375 0 228 264 28 56 chr9 97795256 97795328 -20067299 - L2 LINE L2 -69 3244 3175 365 235 42 0 chr9 97795701 97795820 -20066807 - MER103 DNA DNA -8 158 35 463 250 6 32 chr9 97795884 97796040 -20066587 - MER104 DNA Tc2 -14 166 15 250 294 0 12 chr9 97796296 97796381 -20066246 + MLT1I LTR MaLR 82 165 -244 673 100 58 8 chr9 97796800 97796920 -20065707 + L1PA12 LINE L1 6043 6168 0 2417 219 45 6 chr9 97797814 97798349 -20064278 - MER74A LTR ERVL -2 556 1 400 293 32 0 chr9 97798447 97798570 -20064057 - MIR SINE MIR -6 256 130 340 277 40 0 chr9 97798748 97798849 -20063778 - MIR SINE MIR -22 240 136 2760 179 9 7 chr9 97799099 97799642 -20062985 + L1MB3 LINE L1 5483 6026 -157 443 184 0 0 chr9 97799634 97799721 -20062906 + L1MB4 LINE L1 6062 6148 -32 * 213 39 0 0 chr9 97799721 97799747 -20062880 + (TTATG)n Simple_repeat Simple_repeat 5 30 0 1020 155 3 3 chr9 97799978 97800280 -20062347 + MLT1B LTR MaLR 7 390 0 299 238 129 10 chr9 97801060 97801161 -20061466 + MIR SINE MIR 59 171 -91 230 229 29 14 chr9 97801338 97801408 -20061219 + GA-rich Low_complexity Low_complexity 2 72 0 796 300 107 28 chr9 97802094 97802146 -20060481 + L2 LINE L2 2921 2967 -346 1065 220 62 13 chr9 97802146 97802455 -20060172 - MER33 DNA MER1_type 0 324 1 796 300 107 28 chr9 97802455 97802765 -20059862 + L2 LINE L2 2967 3312 -1 278 380 41 63 chr9 97802863 97803181 -20059446 + L2 LINE L2 2918 3228 -44 511 286 71 10 chr9 97803234 97803430 -20059197 - L2 LINE L2 -8 3305 3098 200 254 0 18 chr9 97803529 97803584 -20059043 + MIR SINE MIR 87 140 -68 633 129 50 0 chr9 97804145 97804246 -20058381 - L1PA11 LINE L1 0 6174 6069 753 113 0 0 chr9 97804247 97804353 -20058274 - U6 snRNA snRNA -1 106 1 199 222 37 0 chr9 97804358 97804412 -20058215 - MIR SINE MIR -101 161 106 264 130 0 0 chr9 97804645 97804691 -20057936 + (TGGA)n Simple_repeat Simple_repeat 1 46 0 397 342 9 0 chr9 97805108 97805219 -20057408 + MIR3 SINE MIR 74 185 -23 243 347 53 0 chr9 97805256 97805351 -20057276 - L2 LINE L2 0 3272 3173 291 307 0 0 chr9 97806836 97806924 -20055703 + (TTCA)n Simple_repeat Simple_repeat 1 88 0 440 328 45 20 chr9 97807102 97807298 -20055329 + MIR SINE MIR 30 230 -32 2408 101 14 25 chr9 97807841 97808209 -20054418 - THE1B LTR MaLR 0 364 1 1627 192 7 27 chr9 97808232 97808524 -20054103 - AluSx SINE Alu -26 286 1 214 314 146 80 chr9 97808972 97809109 -20053518 - MIR SINE MIR -70 192 47 23 0 0 0 chr9 97809825 97809848 -20052779 + AT_rich Low_complexity Low_complexity 1 23 0 565 299 11 23 chr9 97809848 97810022 -20052605 - MIR SINE MIR -55 207 36 2055 138 7 3 chr9 97811329 97811633 -20050994 - AluSx SINE Alu -7 305 1 290 250 139 0 chr9 97811941 97812049 -20050578 + MER63 DNA MER1_type 1 749 -87 518 294 70 114 chr9 97812132 97812220 -20050407 + L2 LINE L2 2832 2922 -350 2629 103 8 0 chr9 97812220 97812579 -20050048 - THE1B LTR MaLR -2 362 1 518 294 70 114 chr9 97812579 97812945 -20049682 + L2 LINE L2 2922 3266 -6 630 251 106 26 chr9 97813348 97813575 -20049052 + MIR SINE MIR 10 254 -8 243 375 18 9 chr9 97814505 97814617 -20048010 - L2 LINE L2 0 3272 3160 248 306 149 16 chr9 97815421 97815542 -20047085 + MIR3 SINE MIR 6 142 -66 243 133 0 0 chr9 97815735 97815780 -20046847 + (TA)n Simple_repeat Simple_repeat 1 45 0 340 336 34 17 chr9 97815849 97815968 -20046659 + L2 LINE L2 3144 3264 -8 458 272 47 35 chr9 97817391 97817560 -20045067 - MIR3 SINE MIR -35 173 3 2284 79 52 15 chr9 97817589 97817932 -20044695 - L1PA10 LINE L1 0 6168 5813 243 0 0 0 chr9 97818254 97818281 -20044346 + (TG)n Simple_repeat Simple_repeat 2 28 0 258 204 0 0 chr9 97818859 97818908 -20043719 + MER94 DNA DNA 4 52 -82 294 29 0 0 chr9 97819108 97819143 -20043484 + (TG)n Simple_repeat Simple_repeat 2 36 0 654 284 50 16 chr9 97819792 97820101 -20042526 + MLT1H1 LTR MaLR 1 358 -237 441 0 0 0 chr9 97820380 97820429 -20042198 + (CA)n Simple_repeat Simple_repeat 2 50 0 321 252 136 29 chr9 97820450 97820593 -20042034 - MIR SINE MIR -59 203 53 498 256 39 8 chr9 97820816 97820945 -20041682 + MIR SINE MIR 77 209 -53 239 297 80 112 chr9 97821084 97821370 -20041257 - L2 LINE L2 -99 3173 2897 238 328 107 23 chr9 97821496 97821673 -20040954 - L2 LINE L2 -557 2757 2566 278 365 170 20 chr9 97822934 97823334 -20039293 + L2 LINE L2 2854 3313 0 2189 108 3 0 chr9 97823336 97823631 -20038996 + AluSx SINE Alu 1 296 -16 231 114 0 0 chr9 97823631 97823666 -20038961 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 314 344 25 8 chr9 97823893 97824015 -20038612 + MER5A DNA MER1_type 48 171 -18 * 629 208 8 8 chr9 97823907 97824032 -20038595 - MER5A DNA MER1_type -50 139 15 185 250 62 94 chr9 97824048 97824176 -20038451 + L2 LINE L2 3189 3312 -1 1914 148 0 23 chr9 97824603 97824906 -20037721 + AluSx SINE Alu 1 296 -16 204 163 0 0 chr9 97825092 97825135 -20037492 + (CATA)n Simple_repeat Simple_repeat 2 44 0 24 32 0 0 chr9 97826327 97826358 -20036269 + AT_rich Low_complexity Low_complexity 1 31 0 273 277 9 62 chr9 97826536 97826648 -20035979 + MIR SINE MIR 111 216 -46 2418 94 0 3 chr9 97826808 97827116 -20035511 - AluSx SINE Alu -5 307 1 412 244 24 16 chr9 97827585 97827712 -20034915 - MER117 DNA MER1_type -41 156 29 908 234 31 27 chr9 97828312 97828573 -20034054 - MIR SINE MIR 0 262 1 445 301 38 16 chr9 97828704 97828887 -20033740 - MIR SINE MIR -51 211 25 263 206 28 14 chr9 97829381 97829522 -20033105 + CT-rich Low_complexity Low_complexity 1 143 0 267 313 60 53 chr9 97830705 97830784 -20031843 - L2 LINE L2 0 3272 3190 1713 83 0 0 chr9 97830784 97831013 -20031614 + L1PA6 LINE L1 5925 6153 -1 267 313 60 53 chr9 97831013 97831083 -20031544 - L2 LINE L2 -82 3190 3122 489 287 98 6 chr9 97831267 97831431 -20031196 + MIR3 SINE MIR 21 199 -9 223 188 16 16 chr9 97832222 97832286 -20030341 + CT-rich Low_complexity Low_complexity 2 65 0 298 333 95 1 chr9 97832504 97832643 -20029984 - MIR SINE MIR -67 141 40 209 255 114 98 chr9 97832799 97832983 -20029644 - L2 LINE L2 -4 3309 3123 260 361 44 6 chr9 97833928 97834086 -20028541 + MLT1G LTR MaLR 28 191 -404 872 233 122 24 chr9 97834113 97834401 -20028226 + MLT1G LTR MaLR 262 577 -13 309 290 87 14 chr9 97834417 97834555 -20028072 + MIR SINE MIR 115 262 0 519 281 96 44 chr9 97834821 97835070 -20027557 + L3 LINE CR1 1195 1456 -121 329 231 50 38 chr9 97835833 97835964 -20026663 - MLT1I LTR MaLR -255 154 21 262 286 36 12 chr9 97836050 97836134 -20026493 + MIR SINE MIR 107 192 -70 199 167 30 15 chr9 97836742 97836808 -20025819 + (TTCA)n Simple_repeat Simple_repeat 4 70 0 469 328 86 33 chr9 97836857 97836938 -20025689 - L2 LINE L2 -13 3259 3184 240 35 0 0 chr9 97836938 97836967 -20025660 + (CAA)n Simple_repeat Simple_repeat 2 30 0 469 328 86 33 chr9 97836967 97837187 -20025440 - L2 LINE L2 -88 3184 2942 189 310 28 56 chr9 97837916 97838058 -20024569 - MIR SINE MIR -71 191 54 24 32 0 0 chr9 97838169 97838200 -20024427 + AT_rich Low_complexity Low_complexity 1 31 0 264 189 0 0 chr9 97838409 97838462 -20024165 - L1ME LINE L1 -252 5869 5817 247 333 0 0 chr9 97838537 97838597 -20024030 + MIR SINE MIR 16 75 -133 289 300 50 42 chr9 97839733 97839853 -20022774 - MIR3 SINE MIR 0 208 88 219 261 169 0 chr9 97839922 97839987 -20022640 + MIR SINE MIR 65 140 -122 183 162 0 0 chr9 97841171 97841208 -20021419 + GA-rich Low_complexity Low_complexity 4 40 0 421 314 16 0 chr9 97842194 97842318 -20020309 + MIR3 SINE MIR 35 160 -48 288 337 12 0 chr9 97843286 97843369 -20019258 - L2 LINE L2 -5 3308 3225 1572 210 54 18 chr9 97843380 97843822 -20018805 + L1ME2 LINE L1 5596 6053 -111 469 307 211 10 chr9 97843940 97844253 -20018374 - L2 LINE L2 -94 3219 2844 198 379 99 38 chr9 97845496 97845789 -20016838 + L2 LINE L2 2882 3192 -80 228 286 38 29 chr9 97845859 97845964 -20016663 - MIR SINE MIR -66 196 91 1567 160 82 26 chr9 97847269 97847612 -20015015 - MSTA LTR MaLR 0 428 67 375 243 129 91 chr9 97847673 97847936 -20014691 - MLT1H LTR MaLR -276 273 1 3417 188 21 29 chr9 97848030 97849523 -20013104 - L1MB1 LINE L1 -169 6020 4536 226 304 67 37 chr9 97849603 97849738 -20012889 + MIR SINE MIR 85 223 -39 296 325 71 71 chr9 97851502 97851785 -20010842 + MLT1K LTR MaLR 158 440 -148 1266 243 64 45 chr9 97851925 97852485 -20010142 + L1ME1 LINE L1 5592 6162 -4 346 311 87 35 chr9 97853783 97853963 -20008664 + MIR3 SINE MIR 8 206 -56 35 0 0 0 chr9 97853970 97854005 -20008622 + AT_rich Low_complexity Low_complexity 1 35 0 1716 141 54 3 chr9 97854048 97854345 -20008282 - L1PA16 LINE L1 -9 6157 5846 302 361 80 9 chr9 97854702 97854867 -20007760 - MIR3 SINE MIR -64 144 4 354 313 80 34 chr9 97854974 97855150 -20007477 - MIR3 SINE MIR -9 199 16 182 327 240 0 chr9 97855595 97855699 -20006928 + L2 LINE L2 2926 3054 -259 290 377 41 0 chr9 97858667 97858789 -20003838 - L2 LINE L2 0 3272 3146 22 0 0 0 chr9 97859231 97859253 -20003374 + AT_rich Low_complexity Low_complexity 1 22 0 4753 161 26 14 chr9 97859950 97860865 -20001762 + L1MA10 LINE L1 5408 6333 -1 1835 129 32 47 chr9 97861204 97861545 -20001082 - MER44D DNA MER2_type 0 609 4 226 303 48 62 chr9 97862058 97862184 -20000443 - MIR SINE MIR -65 143 46 229 304 176 20 chr9 97862528 97862676 -19999951 + MIR SINE MIR 18 188 -74 301 288 54 2 chr9 97862989 97863106 -19999521 + MIR SINE MIR 33 154 -61 330 338 32 37 chr9 97863176 97863392 -19999235 - MIR SINE MIR -42 220 6 442 278 68 0 chr9 97863831 97863964 -19998663 - MIR SINE MIR -42 220 79 389 345 128 5 chr9 97864012 97864215 -19998412 - MIR SINE MIR -15 247 20 1349 169 34 0 chr9 97865055 97865292 -19997335 - L1PB4 LINE L1 -2 6154 5910 223 326 61 20 chr9 97865627 97865725 -19996902 - MER5B DNA MER1_type -76 102 1 203 271 21 0 chr9 97866686 97866734 -19995893 + MIR3 SINE MIR 112 160 -48 263 181 241 0 chr9 97867066 97867149 -19995478 + MIR3 SINE MIR 105 207 -1 242 310 54 47 chr9 97867375 97867504 -19995123 + MIR SINE MIR 63 192 -70 239 325 137 39 chr9 97868719 97868857 -19993770 - L2 LINE L2 0 3272 3149 405 0 0 0 chr9 97868857 97868902 -19993725 + (CA)n Simple_repeat Simple_repeat 2 46 0 239 325 137 39 chr9 97868902 97868997 -19993630 - L2 LINE L2 -123 3149 3016 248 299 222 14 chr9 97869180 97869324 -19993303 + MIR SINE MIR 86 259 -3 191 351 0 0 chr9 97869418 97869475 -19993152 + MIR SINE MIR 40 96 -112 672 179 46 20 chr9 97869688 97869839 -19992788 - L1PB2 LINE L1 -1 6150 5996 463 271 61 6 chr9 97869839 97870020 -19992607 - L1PBa LINE L1 -6667 196 6 193 277 24 48 chr9 97870112 97870195 -19992432 - MIR SINE MIR -110 98 18 202 188 0 0 chr9 97870214 97870246 -19992381 + (TGG)n Simple_repeat Simple_repeat 1 32 0 599 314 17 42 chr9 97870561 97870800 -19991827 - MIR SINE MIR -10 252 20 254 348 45 9 chr9 97870801 97870913 -19991714 - L3 LINE CR1 -73 1504 1389 2048 132 0 10 chr9 97871515 97871819 -19990808 + AluSg SINE Alu 1 301 -9 264 283 36 72 chr9 97872158 97872296 -19990331 - MIR SINE MIR -117 145 13 1707 156 73 0 chr9 97872331 97872606 -19990021 + AluSx SINE Alu 1 295 -17 521 283 71 67 chr9 97872838 97873078 -19989549 + MIR SINE MIR 4 244 -18 262 296 23 53 chr9 97873287 97873419 -19989208 + CT-rich Low_complexity Low_complexity 4 131 0 306 0 0 0 chr9 97873962 97873996 -19988631 + (T)n Simple_repeat Simple_repeat 1 34 0 294 29 0 0 chr9 97874303 97874338 -19988289 + (TG)n Simple_repeat Simple_repeat 2 36 0 367 330 86 19 chr9 97874463 97874672 -19987955 + MIR SINE MIR 34 256 -6 197 289 133 24 chr9 97874897 97874980 -19987647 + L2 LINE L2 2962 3053 -219 204 325 25 50 chr9 97875126 97875246 -19987381 + L3 LINE CR1 1324 1440 -137 208 393 11 44 chr9 97875396 97875579 -19987048 - MER5B DNA MER1_type -1 177 1 548 309 48 10 chr9 97875846 97876053 -19986574 - MIR SINE MIR -29 233 19 822 180 22 56 chr9 97876369 97876547 -19986080 + MER63A DNA MER1_type 4 175 -35 356 289 141 8 chr9 97877297 97877425 -19985202 + MIR3 SINE MIR 2 146 -62 395 294 68 114 chr9 97877679 97878073 -19984554 + L2 LINE L2 2897 3272 0 195 267 0 0 chr9 97878681 97878726 -19983901 - L2 LINE L2 -4 3309 3265 316 319 11 81 chr9 97878791 97878976 -19983651 + MIR SINE MIR 50 221 -41 205 138 0 0 chr9 97879516 97879545 -19983082 + (GAA)n Simple_repeat Simple_repeat 2 30 0 2028 101 0 57 chr9 97879545 97879867 -19982760 + AluY SINE Alu 1 305 0 332 247 62 0 chr9 97879928 97880025 -19982602 + ORSL DNA AcHobo 170 272 -3 1120 211 14 0 chr9 97880110 97880323 -19982304 - MER20 DNA MER1_type 0 219 4 823 244 45 151 chr9 97880388 97880987 -19981640 + L2 LINE L2 2745 3296 -17 186 43 0 0 chr9 97880991 97881014 -19981613 + (AATTG)n Simple_repeat Simple_repeat 5 27 0 245 316 101 68 chr9 97881912 97882279 -19980348 + L2 LINE L2 2534 2912 -402 278 323 120 55 chr9 97882318 97882643 -19979984 - L3 LINE CR1 -104 1473 1128 263 326 11 0 chr9 97883046 97883135 -19979492 - L2 LINE L2 -256 3016 2927 180 0 0 0 chr9 97883579 97883599 -19979028 + (T)n Simple_repeat Simple_repeat 1 20 0 1500 212 12 6 chr9 97884110 97884440 -19978187 - MER58B DNA MER1_type 0 341 10 339 299 212 13 chr9 97884590 97884793 -19977834 - MIR SINE MIR -23 239 8 229 284 102 68 chr9 97885271 97885447 -19977180 + L3 LINE CR1 1178 1359 -218 260 230 5 17 chr9 97885676 97885741 -19976886 + MIR SINE MIR 80 137 -71 561 296 201 29 chr9 97886193 97886670 -19975957 + L3 LINE CR1 966 1524 -53 503 332 42 5 chr9 97887097 97887290 -19975337 + MIR SINE MIR 20 219 -43 313 338 23 7 chr9 97887356 97887496 -19975131 - MIR SINE MIR -80 128 12 188 163 0 20 chr9 97887855 97887904 -19974723 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 286 299 10 31 chr9 97887932 97888029 -19974598 + MIR SINE MIR 45 139 -69 21 36 0 0 chr9 97888363 97888391 -19974236 + AT_rich Low_complexity Low_complexity 1 28 0 185 139 23 0 chr9 97888415 97888458 -19974169 + T-rich Low_complexity Low_complexity 5 48 0 332 319 44 19 chr9 97890018 97890178 -19972449 + MIR SINE MIR 1 164 -98 310 290 64 66 chr9 97890987 97891239 -19971388 - MIR3 SINE MIR -1 261 8 346 299 35 62 chr9 97891327 97891471 -19971156 - MIR SINE MIR -111 151 12 479 256 0 51 chr9 97892269 97892352 -19970275 - L2 LINE L2 0 3313 3236 2627 168 12 2 chr9 97892352 97892774 -19969853 - MSTB LTR MaLR 0 426 1 479 256 0 51 chr9 97892774 97892807 -19969820 - L2 LINE L2 -77 3236 3203 263 342 21 31 chr9 97892840 97893033 -19969594 - L2 LINE L2 -270 3002 2812 224 217 0 0 chr9 97894576 97894622 -19968005 + CT-rich Low_complexity Low_complexity 2 47 0 342 317 149 25 chr9 97894704 97894920 -19967707 - MIR SINE MIR -14 248 6 316 243 0 112 chr9 97895171 97895231 -19967396 - L2 LINE L2 0 3313 3269 612 233 28 23 chr9 97895231 97895407 -19967220 - MER5B DNA MER1_type 0 178 2 316 243 0 112 chr9 97895407 97895453 -19967174 - L2 LINE L2 -44 3269 3219 255 311 68 0 chr9 97895728 97895802 -19966825 - L2 LINE L2 -46 3267 3189 288 274 19 98 chr9 97896491 97896688 -19965939 + MIR3 SINE MIR 35 215 -29 275 246 46 0 chr9 97897401 97897466 -19965161 - MIR SINE MIR -103 159 92 363 353 24 24 chr9 97897664 97897834 -19964793 + MLT1I LTR MaLR 126 295 -114 187 400 96 9 chr9 97897922 97898037 -19964590 - MIR SINE MIR -131 131 7 360 0 0 0 chr9 97898098 97898138 -19964489 + (CA)n Simple_repeat Simple_repeat 1 40 0 434 169 8 9 chr9 97898276 97898370 -19964257 - MER5A DNA MER1_type -92 97 4 215 273 15 30 chr9 97899661 97899739 -19962888 + CT-rich Low_complexity Low_complexity 4 133 0 3257 66 0 16 chr9 97899778 97900216 -19962411 - L1PA7 LINE L1 -1 6153 5723 270 370 0 0 chr9 97900387 97900468 -19962159 + MIR SINE MIR 20 100 -162 330 300 23 46 chr9 97900622 97900752 -19961875 - L2 LINE L2 -4 3309 3183 422 278 83 6 chr9 97900768 97900937 -19961690 + MER58C DNA MER1_type 26 207 -8 412 350 48 64 chr9 97901234 97901545 -19961082 + L2 LINE L2 2966 3271 -1 22 35 0 0 chr9 97902197 97902226 -19960401 + AT_rich Low_complexity Low_complexity 1 29 0 259 251 115 71 chr9 97902251 97902434 -19960193 - MIR3 SINE MIR -16 192 2 549 311 118 47 chr9 97903026 97903434 -19959193 + HAL1 LINE L1 638 1074 -1433 219 139 0 0 chr9 97903440 97903476 -19959151 + (TA)n Simple_repeat Simple_repeat 1 36 0 682 258 142 55 chr9 97903574 97904245 -19958382 + LTR41 LTR ERVL 6 764 -9 320 327 61 52 chr9 97904335 97904926 -19957701 + HAL1 LINE L1 1291 1886 -621 2103 123 0 7 chr9 97905039 97905339 -19957288 + AluSx SINE Alu 1 298 -14 341 270 62 80 chr9 97905544 97905770 -19956857 + HAL1 LINE L1 2286 2507 0 205 316 13 0 chr9 97905796 97905872 -19956755 + MIR SINE MIR 185 261 -1 296 254 35 21 chr9 97906857 97906999 -19955628 + (TA)n Simple_repeat Simple_repeat 2 145 0 212 312 65 0 chr9 97908085 97908162 -19954465 + L2 LINE L2 3172 3253 -19 295 348 43 0 chr9 97908671 97908809 -19953818 - MIR SINE MIR -19 243 100 258 266 76 49 chr9 97909205 97909347 -19953280 + MIR SINE MIR 42 185 -63 350 307 63 8 chr9 97909992 97910119 -19952508 + MIR SINE MIR 30 163 -99 26 0 0 0 chr9 97910205 97910231 -19952396 + AT_rich Low_complexity Low_complexity 1 26 0 642 300 22 22 chr9 97910249 97910476 -19952151 - MIR SINE MIR -34 228 2 364 99 28 0 chr9 97910952 97911023 -19951604 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 271 234 62 0 chr9 97911185 97911249 -19951378 + MER58A DNA MER1_type 1 68 -39 8228 203 33 9 chr9 97911493 97913476 -19949151 - L1PA16 LINE L1 -9 6157 4072 375 23 0 0 chr9 97913476 97913520 -19949107 + (CTATT)n Simple_repeat Simple_repeat 5 48 0 8228 203 33 9 chr9 97913520 97914584 -19948043 - L1PA16 LINE L1 -2094 4072 3035 741 241 0 0 chr9 97914601 97914767 -19947860 + MER58A DNA MER1_type 44 209 -15 289 176 0 0 chr9 97914814 97914865 -19947762 - LTR33A LTR ERVL 0 523 473 230 371 86 9 chr9 97915624 97915740 -19946887 + L2 LINE L2 3187 3311 -2 212 333 8 54 chr9 97916139 97916272 -19946355 + MIR SINE MIR 32 157 -63 22 56 0 0 chr9 97917287 97917323 -19945304 + AT_rich Low_complexity Low_complexity 1 36 0 230 333 69 21 chr9 97917805 97917949 -19944678 - L2 LINE L2 -718 2596 2446 213 269 0 0 chr9 97919710 97919762 -19942865 + (CA)n Simple_repeat Simple_repeat 1 52 0 23 0 0 0 chr9 97920487 97920510 -19942117 + AT_rich Low_complexity Low_complexity 1 23 0 421 283 53 0 chr9 97921125 97921238 -19941389 - MIR SINE MIR -70 138 20 206 118 0 0 chr9 97922093 97922127 -19940500 + (T)n Simple_repeat Simple_repeat 1 34 0 249 109 0 78 chr9 97922214 97922278 -19940349 - L1MA4A LINE L1 0 6303 6245 531 158 105 111 chr9 97923312 97923435 -19939192 + MER5A DNA MER1_type 1 124 -65 2084 105 3 17 chr9 97923435 97923730 -19938897 - AluSp SINE Alu -17 296 6 531 158 105 111 chr9 97923730 97923796 -19938831 + MER5A DNA MER1_type 124 189 0 245 352 49 22 chr9 97924017 97924162 -19938465 - MIR3 SINE MIR -67 141 4 450 321 12 0 chr9 97924240 97924402 -19938225 + MER117 DNA MER1_type 22 185 -12 243 128 26 13 chr9 97924634 97924712 -19937915 + (CAAA)n Simple_repeat Simple_repeat 2 80 0 514 280 33 11 chr9 97926273 97926455 -19936172 + MER110-int LTR ERV1 4298 4483 -164 234 204 0 0 chr9 97926667 97926716 -19935911 + MER110 LTR ERV1 1 49 -442 2020 189 83 0 chr9 97926716 97927161 -19935466 + MER110 LTR ERV1 9 490 -1 209 294 184 71 chr9 97927235 97927670 -19934957 - L2 LINE L2 0 3313 2830 2231 94 3 3 chr9 97928427 97928726 -19933901 + AluY SINE Alu 1 299 -12 2051 175 5 22 chr9 97928970 97929290 -19933337 - MLT1A1 LTR MaLR 0 365 50 3430 69 2 9 chr9 97929290 97929737 -19932890 + MLT2A1 LTR ERVL 1 444 0 2051 175 5 22 chr9 97929737 97929787 -19932840 - MLT1A1 LTR MaLR -315 50 1 1012 299 98 34 chr9 97929787 97930683 -19931944 + L1MEd LINE L1 46 999 -5120 216 324 48 19 chr9 97931206 97931311 -19931316 - MIR SINE MIR -47 215 108 250 33 0 0 chr9 97931340 97931370 -19931257 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1834 122 0 0 chr9 97931370 97931617 -19931010 - AluSg SINE Alu -28 282 36 2523 55 0 3 chr9 97931623 97931931 -19930696 - AluY SINE Alu -4 307 1 2065 159 0 0 chr9 97932428 97932729 -19929898 + AluSx SINE Alu 1 301 -11 346 372 124 0 chr9 97933040 97933266 -19929361 - MIR SINE MIR -5 257 4 253 233 14 0 chr9 97933366 97933439 -19929188 + MER103 DNA DNA 89 162 -4 225 276 17 0 chr9 97934364 97934422 -19928205 - MIR3 SINE MIR 0 208 150 312 262 198 43 chr9 97935133 97935320 -19927307 + HAL1 LINE L1 825 1040 -1467 279 253 0 13 chr9 97935573 97935648 -19926979 + LTR16B LTR ERVL 85 158 -306 1036 194 22 9 chr9 97936123 97936355 -19926272 - MER46A DNA MER2_type -1 235 1 242 252 24 39 chr9 97936817 97936944 -19925683 + L1MEd LINE L1 2269 2393 -3736 28 48 0 0 chr9 97937120 97937162 -19925465 + AT_rich Low_complexity Low_complexity 1 42 0 32 75 0 0 chr9 97937298 97937365 -19925262 + AT_rich Low_complexity Low_complexity 1 67 0 255 299 181 28 chr9 97938540 97938684 -19923943 + MIR3 SINE MIR 20 185 -23 186 43 0 0 chr9 97938801 97938824 -19923803 + (CA)n Simple_repeat Simple_repeat 1 23 0 327 272 129 82 chr9 97938879 97939111 -19923516 - MIR SINE MIR -12 250 8 289 291 89 49 chr9 97939741 97939944 -19922683 - MIR SINE MIR 0 262 52 31 26 0 0 chr9 97941133 97941171 -19921456 + AT_rich Low_complexity Low_complexity 1 38 0 271 357 101 10 chr9 97941267 97941466 -19921161 + MIR SINE MIR 44 260 -2 340 279 126 0 chr9 97941524 97941635 -19920992 + L2 LINE L2 3189 3313 0 183 351 79 18 chr9 97942013 97942127 -19920500 - L2 LINE L2 -6 3307 3187 439 295 46 54 chr9 97942459 97942700 -19919927 - MIR SINE MIR -19 243 5 203 354 12 37 chr9 97942717 97942799 -19919828 + L2 LINE L2 3001 3080 -192 252 348 92 14 chr9 97942868 97943009 -19919618 + L2 LINE L2 3119 3270 -2 277 237 0 0 chr9 97943690 97943749 -19918878 - MER81 DNA DNA -36 78 20 238 314 48 38 chr9 97943870 97943975 -19918652 + MLT1H LTR MaLR 238 343 -206 573 297 31 66 chr9 97944082 97944368 -19918259 + L3 LINE CR1 1244 1519 -58 324 0 0 0 chr9 97944526 97944562 -19918065 + (TG)n Simple_repeat Simple_repeat 2 37 0 1263 277 50 65 chr9 97944853 97945520 -19917107 + MLT2F LTR ERVL 1 657 -6 200 303 20 81 chr9 97945571 97945670 -19916957 + MIR SINE MIR 2 94 -168 374 192 26 0 chr9 97945674 97945752 -19916875 + MLT1F1 LTR MaLR 1 80 -462 3635 117 123 118 chr9 97945757 97947142 -19915485 + pTR5 LTR ERV1 743 2438 0 745 241 94 13 chr9 97947160 97947534 -19915093 + MLT1F1 LTR MaLR 96 565 -2 337 289 30 37 chr9 97947578 97947713 -19914914 + MIR SINE MIR 120 253 -9 353 321 28 0 chr9 97948593 97948699 -19913928 + MIR SINE MIR 77 185 -77 258 222 28 14 chr9 97949106 97949178 -19913449 + Tigger5 DNA MER2_type 2251 2323 0 228 336 48 56 chr9 97949232 97949357 -19913270 - MIR SINE MIR -109 153 30 225 274 14 14 chr9 97949932 97950005 -19912622 + Tigger5 DNA MER2_type 2251 2323 0 1479 203 81 12 chr9 97950036 97950356 -19912271 - MER61A LTR ERV1 0 343 2 226 385 42 10 chr9 97950387 97950483 -19912144 - MIR SINE MIR -58 150 52 201 345 36 12 chr9 97950930 97951014 -19911613 + MIR SINE MIR 46 131 -131 478 322 23 29 chr9 97951240 97951400 -19911227 + MIR3 SINE MIR 12 172 -36 777 237 12 0 chr9 97951400 97951573 -19911054 + MER5B DNA MER1_type 4 178 0 2295 176 24 9 chr9 97951716 97952166 -19910461 - MLT1C LTR MaLR 0 467 11 337 339 148 25 chr9 97953195 97953472 -19909155 - L2 LINE L2 -9 3263 2953 182 387 72 21 chr9 97953511 97953705 -19908922 - L2 LINE L2 -405 2909 2706 2183 83 69 0 chr9 97954503 97954792 -19907835 + AluY SINE Alu 1 309 -2 209 33 33 0 chr9 97955401 97955431 -19907196 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 210 299 15 0 chr9 97955795 97955862 -19906765 + CT-rich Low_complexity Low_complexity 4 71 0 2561 154 5 16 chr9 97956338 97956452 -19906175 + MSTA LTR MaLR 5 119 -309 1887 126 79 25 chr9 97956452 97956808 -19905819 - THE1C LTR MaLR 0 375 1 2561 154 5 16 chr9 97956808 97957122 -19905505 + MSTA LTR MaLR 119 428 0 441 291 104 0 chr9 97957469 97957603 -19905024 - MIR3 SINE MIR -38 170 23 313 361 23 8 chr9 97957819 97957949 -19904678 + MIR3 SINE MIR 10 141 -67 902 264 79 49 chr9 97959810 97960241 -19902386 - LTR16B LTR ERVL -20 444 1 494 352 80 8 chr9 97962608 97962858 -19899769 - L3 LINE CR1 -2 1575 1308 363 299 60 22 chr9 97962886 97963070 -19899557 + MIR SINE MIR 64 254 -8 424 358 51 10 chr9 97963724 97964017 -19898610 + LTR16A LTR ERVL 71 375 -75 31 26 0 0 chr9 97965464 97965502 -19897125 + AT_rich Low_complexity Low_complexity 1 38 0 418 277 168 25 chr9 97965543 97965745 -19896882 + MIR SINE MIR 32 262 0 2198 106 3 0 chr9 97965891 97966184 -19896443 + AluSg SINE Alu 1 294 -16 204 302 0 0 chr9 97966491 97966544 -19896083 - L2 LINE L2 -24 3289 3237 349 345 102 11 chr9 97966645 97966822 -19895805 + MIR SINE MIR 63 255 -7 198 103 0 0 chr9 97967576 97967605 -19895022 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 266 347 101 58 chr9 97967926 97968324 -19894303 - L2 LINE L2 -358 2956 2542 351 302 0 0 chr9 97969540 97969636 -19892991 + MIR SINE MIR 57 152 -110 268 328 46 63 chr9 97969865 97970039 -19892588 - MIR SINE MIR -8 254 84 25 0 0 0 chr9 97970120 97970145 -19892482 + AT_rich Low_complexity Low_complexity 1 25 0 206 150 0 25 chr9 97970585 97970625 -19892002 + (TG)n Simple_repeat Simple_repeat 2 40 0 1965 128 0 0 chr9 97970822 97971134 -19891493 + AluSg SINE Alu 1 312 0 1276 116 0 5 chr9 97971180 97971378 -19891249 + L1PB1 LINE L1 5955 6151 0 1101 283 77 28 chr9 97971665 97972092 -19890535 + MLT1H LTR MaLR 102 549 0 390 260 40 0 chr9 97972784 97972934 -19889693 + (TA)n Simple_repeat Simple_repeat 2 157 0 24 32 0 0 chr9 97972951 97972982 -19889645 + AT_rich Low_complexity Low_complexity 1 31 0 242 340 32 0 chr9 97973018 97973112 -19889515 - MIR3 SINE MIR -54 154 58 814 267 57 27 chr9 97973321 97973654 -19888973 + MER2 DNA MER2_type 1 343 -1 1101 253 59 37 chr9 97973798 97974253 -19888374 - L1ME1 LINE L1 0 6164 5697 3753 163 24 104 chr9 97974253 97975254 -19887373 + Tigger1 DNA MER2_type 1 921 -1497 2918 142 36 0 chr9 97975445 97975945 -19886682 - Tigger1 DNA MER2_type -1465 953 436 811 174 48 0 chr9 97976124 97976291 -19886336 - Tigger1 DNA MER2_type -2054 364 190 545 121 0 0 chr9 97976301 97976384 -19886243 - MLT2A2 LTR ERVL -370 83 1 819 310 19 10 chr9 97976384 97976694 -19885933 - L1MCa LINE L1 -5506 539 227 1709 184 127 21 chr9 97976694 97976867 -19885760 + MSTA LTR MaLR 1 154 -274 1565 111 22 4 chr9 97976867 97977093 -19885534 + MER30 DNA MER1_type 1 230 0 1709 184 127 21 chr9 97977093 97977306 -19885321 + MSTA LTR MaLR 154 428 0 479 290 36 27 chr9 97977308 97977554 -19885073 - L1MCa LINE L1 -5816 320 3 2333 86 0 0 chr9 97977617 97977908 -19884719 + AluY SINE Alu 1 291 -20 180 366 0 0 chr9 97978028 97978099 -19884528 + L2 LINE L2 3242 3312 -1 242 306 123 12 chr9 97978231 97978401 -19884226 - MIR SINE MIR -11 251 63 190 262 0 0 chr9 97978950 97978992 -19883635 + MIR SINE MIR 2 43 -219 190 262 0 0 chr9 97979545 97979587 -19883040 - MIR SINE MIR -219 43 2 383 268 1 0 chr9 97979966 97980073 -19882554 - MLT1J1 LTR MaLR -328 122 15 381 278 0 0 chr9 97980081 97980171 -19882456 + MIR SINE MIR 173 262 0 322 329 51 32 chr9 97980367 97980525 -19882102 - MIR SINE MIR -90 172 12 1333 166 8 0 chr9 97980668 97980927 -19881700 - L1MA4A LINE L1 -1 6302 6042 460 317 30 25 chr9 97980960 97981159 -19881468 + L3 LINE CR1 1086 1285 -292 304 324 198 16 chr9 97981348 97981530 -19881097 + L3 LINE CR1 1351 1565 -12 385 313 12 43 chr9 97982092 97982255 -19880372 - MIR SINE MIR -56 206 49 537 214 97 13 chr9 97983544 97983719 -19878908 + MIR SINE MIR 73 262 0 249 298 44 19 chr9 97984340 97984498 -19878129 - L1P5 LINE L1 -610 5546 5385 249 324 91 7 chr9 97984604 97984879 -19877748 - L1M4 LINE L1 -891 5255 4958 21 0 0 0 chr9 97985571 97985592 -19877035 + AT_rich Low_complexity Low_complexity 1 21 0 772 302 36 8 chr9 97985613 97985861 -19876766 - MIR SINE MIR 0 262 8 627 317 27 9 chr9 97985901 97986126 -19876501 + MIR SINE MIR 32 260 -2 1648 152 0 0 chr9 97986230 97986473 -19876154 + AluJb SINE Alu 1 243 -69 188 250 31 16 chr9 97986625 97986689 -19875938 + MIR3 SINE MIR 133 197 -11 1836 185 0 22 chr9 97987510 97987824 -19874803 - AluJo SINE Alu -5 307 1 291 288 13 72 chr9 97987895 97988048 -19874579 - MIR3 SINE MIR -61 147 4 180 289 178 30 chr9 97988735 97988870 -19873757 - MER5A DNA MER1_type 0 189 35 275 261 115 61 chr9 97989017 97989182 -19873445 + MER5B DNA MER1_type 3 176 -2 197 289 0 0 chr9 97989917 97989962 -19872665 + L2 LINE L2 3258 3302 -11 349 254 64 29 chr9 97989976 97990149 -19872478 - L1MC4a LINE L1 -1902 5906 5728 274 180 67 56 chr9 97990152 97990241 -19872386 - L1MC4a LINE L1 -499 5622 5533 2303 163 39 11 chr9 97990943 97991385 -19871242 + L1MA9 LINE L1 5627 6080 -232 182 33 67 0 chr9 97991573 97991603 -19871024 + A-rich Low_complexity Low_complexity 3 34 0 191 315 11 22 chr9 97991677 97991766 -19870861 + MIR SINE MIR 163 250 -12 189 279 29 29 chr9 97991805 97991873 -19870754 + MIR SINE MIR 23 90 -118 23 0 0 0 chr9 97991899 97991922 -19870705 + AT_rich Low_complexity Low_complexity 1 23 0 454 307 45 29 chr9 97992426 97992670 -19869957 - MIR SINE MIR -2 260 13 204 267 0 0 chr9 97992789 97992834 -19869793 + (TA)n Simple_repeat Simple_repeat 2 46 0 551 162 7 29 chr9 97994837 97994973 -19867654 + CT-rich Low_complexity Low_complexity 1 133 0 391 275 155 27 chr9 97995108 97995253 -19867374 + L1MC4 LINE L1 6455 6580 -1462 1504 214 13 101 chr9 97995253 97995805 -19866822 - MLT1D LTR MaLR -2 503 1 391 275 155 27 chr9 97995805 97995917 -19866710 + L1MC4 LINE L1 6580 6745 -1297 385 349 8 0 chr9 97995925 97996051 -19866576 - LTR16A LTR ERVL -114 336 210 323 192 13 0 chr9 97996071 97996149 -19866478 + GA-rich Low_complexity Low_complexity 2 80 0 186 361 66 0 chr9 97996614 97996675 -19865952 + L2 LINE L2 3168 3232 -40 307 362 106 33 chr9 97996691 97997241 -19865386 + L2 LINE L2 2296 2885 -429 1938 159 116 35 chr9 97997514 97997732 -19864895 - MSTA LTR MaLR 0 428 229 2226 89 0 3 chr9 97997732 97998037 -19864590 - AluSg SINE Alu 0 304 1 1938 159 116 35 chr9 97998037 97998213 -19864414 - MSTA LTR MaLR -199 229 1 232 269 77 13 chr9 97998229 97998307 -19864320 + L2 LINE L2 3231 3313 0 229 320 62 31 chr9 97998300 97998397 -19864230 + MIR3 SINE MIR 8 107 -101 * 2155 315 121 45 chr9 97998490 97999235 -19863392 + L2 LINE L2 1441 2128 -1185 2374 83 3 3 chr9 97999235 97999536 -19863091 - AluSp SINE Alu -12 301 1 2155 315 121 45 chr9 97999536 98000290 -19862337 + L2 LINE L2 2128 3058 -255 477 328 53 33 chr9 98000660 98001358 -19861269 - L1M4 LINE L1 -749 5397 4686 326 305 57 0 chr9 98001510 98001687 -19860940 - L1M4 LINE L1 -1854 4292 4106 4480 171 26 52 chr9 98002721 98003651 -19858976 + L1MB3 LINE L1 17 922 -5462 1497 213 6 6 chr9 98003681 98004033 -19858594 - L1PB1 LINE L1 -1736 4410 4059 * 5607 176 11 2 chr9 98004025 98005761 -19856866 + L1PB1 LINE L1 4398 6151 0 4571 194 37 31 chr9 98005770 98005844 -19856783 + L1MB3 LINE L1 935 1007 -5375 436 0 33 17 chr9 98005844 98005904 -19856723 + (GAAA)n Simple_repeat Simple_repeat 3 63 0 4571 194 37 31 chr9 98005904 98005960 -19856667 + L1MB3 LINE L1 1007 1061 -5321 1109 166 166 73 chr9 98005960 98006303 -19856324 - THE1C LTR MaLR 0 375 1 4571 194 37 31 chr9 98006303 98008871 -19853756 + L1MB3 LINE L1 1061 3741 -2641 710 51 20 0 chr9 98008871 98008969 -19853658 + (GAAA)n Simple_repeat Simple_repeat 4 103 0 4571 194 37 31 chr9 98008969 98009085 -19853542 + L1MB3 LINE L1 3741 3855 -2527 4217 199 27 92 chr9 98009073 98009664 -19852963 + L1MB3 LINE L1 4387 5015 -1404 * 4003 147 16 46 chr9 98009664 98010462 -19852165 + L1MA4A LINE L1 5528 6301 -2 4217 199 27 92 chr9 98010462 98012036 -19850591 + L1MB3 LINE L1 5015 6417 -2 21 0 0 0 chr9 98013056 98013077 -19849550 + AT_rich Low_complexity Low_complexity 1 21 0 4199 224 27 73 chr9 98013101 98013431 -19849196 + L1MB3 LINE L1 4431 4775 -1408 3808 153 16 47 chr9 98013431 98014218 -19848409 + L1MA4A LINE L1 5539 6301 -2 4199 224 27 73 chr9 98014218 98015792 -19846835 + L1MB3 LINE L1 4775 6181 -2 201 319 54 54 chr9 98016745 98016911 -19845716 - MIR3 SINE MIR -28 180 15 757 281 0 0 chr9 98016985 98017163 -19845464 + MER45A DNA AcHobo 1 178 0 447 284 72 46 chr9 98017611 98017805 -19844822 + MIR SINE MIR 7 205 -57 253 226 76 13 chr9 98018559 98018668 -19843959 + MIR SINE MIR 81 206 -2 259 287 67 85 chr9 98020653 98020817 -19841810 + L2 LINE L2 3046 3206 -66 21 0 0 0 chr9 98021209 98021230 -19841397 + AT_rich Low_complexity Low_complexity 1 21 0 1683 202 0 10 chr9 98021600 98021897 -19840730 - AluJb SINE Alu -16 296 3 2279 104 3 3 chr9 98021950 98022258 -19840369 - AluSg SINE Alu -2 308 1 289 310 133 0 chr9 98022296 98022409 -19840218 + L2 LINE L2 3185 3312 -1 332 293 135 14 chr9 98022589 98022811 -19839816 - MIR SINE MIR -12 250 2 2287 112 0 0 chr9 98023038 98023341 -19839286 + AluSx SINE Alu 1 303 -9 227 53 0 26 chr9 98023578 98023616 -19839011 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 210 375 0 18 chr9 98023673 98023785 -19838842 - MIR SINE MIR -93 169 60 1403 74 32 105 chr9 98023886 98024171 -19838456 + L1P4 LINE L1 5261 5524 -639 1086 107 0 0 chr9 98024148 98024307 -19838320 + L1PA13 LINE L1 6005 6163 0 * 481 319 18 12 chr9 98025338 98025507 -19837120 + MER5B DNA MER1_type 8 177 -1 200 355 43 11 chr9 98025507 98025594 -19837033 + MIR3 SINE MIR 114 203 -5 207 0 0 0 chr9 98026154 98026177 -19836450 + (TTG)n Simple_repeat Simple_repeat 2 24 0 311 302 52 17 chr9 98026531 98026647 -19835980 + L2 LINE L2 3149 3268 -4 216 0 0 0 chr9 98026936 98026960 -19835667 + (A)n Simple_repeat Simple_repeat 1 24 0 218 256 99 16 chr9 98028301 98028422 -19834205 + L2 LINE L2 1938 2068 -1246 508 289 39 8 chr9 98028476 98028758 -19833869 + MLT1I LTR MaLR 86 406 -3 309 320 135 45 chr9 98029619 98029953 -19832674 + L3 LINE CR1 1170 1533 -44 2128 110 10 3 chr9 98030539 98030847 -19831780 - AluSg SINE Alu 0 310 1 320 338 140 0 chr9 98031084 98031241 -19831386 - MIR SINE MIR -12 250 72 1188 224 136 11 chr9 98031432 98031784 -19830843 - MSTD LTR MaLR 0 396 1 542 239 21 21 chr9 98031903 98032045 -19830582 + L2 LINE L2 3172 3313 0 280 322 6 27 chr9 98033384 98033567 -19829060 + CT-rich Low_complexity Low_complexity 2 180 0 2197 124 0 0 chr9 98033772 98034070 -19828557 + AluSx SINE Alu 1 298 -14 189 0 0 0 chr9 98035268 98035289 -19827338 + (A)n Simple_repeat Simple_repeat 1 21 0 1973 132 3 50 chr9 98035968 98036287 -19826340 - AluSx SINE Alu -8 304 1 27 0 0 0 chr9 98036287 98036314 -19826313 + AT_rich Low_complexity Low_complexity 1 27 0 526 372 108 26 chr9 98037015 98037440 -19825187 + L2 LINE L2 2807 3266 -6 225 0 0 0 chr9 98037812 98037837 -19824790 + (TTA)n Simple_repeat Simple_repeat 3 27 0 7403 37 0 0 chr9 98037837 98039035 -19823592 - L1PA3 LINE L1 -18 6137 4940 314 321 62 29 chr9 98039174 98039448 -19823179 + HAL1 LINE L1 229 511 -1996 380 320 126 34 chr9 98039506 98039681 -19822946 + HAL1 LINE L1 592 782 -1725 767 291 92 32 chr9 98039745 98039940 -19822687 + HAL1 LINE L1 876 1058 -1449 2381 96 3 0 chr9 98039940 98040243 -19822384 + AluSc SINE Alu 1 304 -5 767 291 92 32 chr9 98040243 98040449 -19822178 + HAL1 LINE L1 1058 1301 -1206 409 296 122 39 chr9 98040545 98041061 -19821566 + HAL1 LINE L1 1501 2059 -448 236 185 11 33 chr9 98041063 98041155 -19821472 + (TA)n Simple_repeat Simple_repeat 1 90 0 532 289 120 14 chr9 98041183 98041467 -19821160 + HAL1 LINE L1 2084 2397 -110 511 318 56 39 chr9 98041735 98042072 -19820555 + L1M4 LINE L1 2151 2493 -3653 238 290 58 14 chr9 98043003 98043072 -19819555 + MIR SINE MIR 54 125 -83 4743 54 5 0 chr9 98043123 98043711 -19818916 - LTR10C LTR ERV1 0 591 1 347 369 46 64 chr9 98044086 98044368 -19818259 + L2 LINE L2 2993 3269 -3 199 333 25 0 chr9 98045346 98045427 -19817200 + MIR SINE MIR 39 121 -87 371 272 73 24 chr9 98045712 98045918 -19816709 - L1MC5 LINE L1 -51 7910 7695 26 64 0 0 chr9 98046283 98046330 -19816297 + AT_rich Low_complexity Low_complexity 1 47 0 2204 109 3 0 chr9 98046423 98046717 -19815910 + AluSx SINE Alu 1 295 -17 369 58 0 0 chr9 98046718 98046770 -19815857 + (TA)n Simple_repeat Simple_repeat 2 53 0 11427 35 1 0 chr9 98046772 98048901 -19813726 - L1PA4 LINE L1 -17 6138 4008 344 80 0 0 chr9 98048902 98048952 -19813675 + L1P LINE L1 1078 1127 -5019 208 351 13 0 chr9 98050321 98050398 -19812229 - L3 LINE CR1 -90 1487 1410 459 299 180 41 chr9 98050662 98051217 -19811410 - L3 LINE CR1 -354 1223 592 463 342 138 29 chr9 98051582 98052269 -19810358 - L2 LINE L2 -94 3219 2458 612 233 13 20 chr9 98052795 98052945 -19809682 + L2 LINE L2 3111 3259 -54 299 258 61 0 chr9 98054272 98054338 -19808289 - L2 LINE L2 -33 3280 3211 492 141 99 68 chr9 98054756 98054947 -19807680 - Charlie5 DNA MER1_type 0 2623 2427 321 26 0 0 chr9 98055343 98055381 -19807246 + (CAGG)n Simple_repeat Simple_repeat 2 39 0 621 250 43 32 chr9 98056744 98056932 -19805695 + MIR SINE MIR 7 196 -66 692 301 56 29 chr9 98056963 98057305 -19805322 - MER21B LTR ERV1 -149 714 364 340 247 32 89 chr9 98057365 98057523 -19805104 - MER21B LTR ERV1 -691 172 24 370 222 170 37 chr9 98057587 98057722 -19804905 - MER58B DNA MER1_type 0 341 63 25 75 0 0 chr9 98057758 98057811 -19804816 + AT_rich Low_complexity Low_complexity 1 53 0 201 246 0 33 chr9 98057821 98057882 -19804745 + (TTA)n Simple_repeat Simple_repeat 1 59 0 250 357 16 71 chr9 98059440 98059622 -19803005 + L2 LINE L2 2912 3083 -189 216 0 0 0 chr9 98059773 98059797 -19802830 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 2135 79 38 10 chr9 98059817 98060108 -19802519 - AluY SINE Alu -12 299 1 234 220 0 17 chr9 98060585 98060644 -19801983 + (TA)n Simple_repeat Simple_repeat 2 59 0 311 136 17 0 chr9 98060644 98060703 -19801924 + (CA)n Simple_repeat Simple_repeat 2 61 0 191 262 0 0 chr9 98061008 98061050 -19801577 + MIR SINE MIR 108 149 -113 541 257 87 16 chr9 98061744 98061927 -19800700 - MIR SINE MIR -16 246 51 392 320 122 0 chr9 98062827 98062983 -19799644 + MIR SINE MIR 76 250 -12 21 0 0 0 chr9 98062986 98063007 -19799620 + AT_rich Low_complexity Low_complexity 1 21 0 253 316 110 0 chr9 98063736 98063872 -19798755 + L2 LINE L2 2329 2479 -835 268 288 74 61 chr9 98063879 98064042 -19798585 - L2 LINE L2 -618 2696 2532 378 306 57 52 chr9 98064138 98064331 -19798296 + MIR SINE MIR 58 251 -11 24 53 0 0 chr9 98064344 98064382 -19798245 + AT_rich Low_complexity Low_complexity 1 38 0 225 94 0 0 chr9 98064571 98064603 -19798024 + (TG)n Simple_repeat Simple_repeat 2 33 0 210 231 0 0 chr9 98065123 98065162 -19797465 + MIR SINE MIR 57 95 -167 272 281 62 89 chr9 98065312 98065458 -19797169 - MIR SINE MIR -116 146 5 2139 111 3 13 chr9 98065575 98065873 -19796754 - AluSc SINE Alu -14 295 1 200 300 36 55 chr9 98066207 98066317 -19796310 + L2 LINE L2 2950 3057 -215 189 289 36 36 chr9 98066481 98066564 -19796063 + L2 LINE L2 3229 3311 -2 232 204 0 0 chr9 98066591 98066635 -19795992 - LTR16B LTR ERVL -14 450 407 341 316 7 0 chr9 98066744 98066880 -19795747 - LTR16B LTR ERVL -266 198 62 283 359 26 86 chr9 98066963 98067311 -19795316 - L2 LINE L2 0 3272 2946 1995 166 72 13 chr9 98067446 98067820 -19794807 - MSTD LTR MaLR 0 396 1 585 339 85 32 chr9 98068296 98068765 -19793862 + L2 LINE L2 2819 3312 -1 193 366 12 12 chr9 98069739 98069821 -19792806 + L2 LINE L2 3137 3218 -54 1228 174 14 11 chr9 98070251 98070607 -19792020 + L1MA7 LINE L1 5817 6279 -12 807 196 0 0 chr9 98070613 98070746 -19791881 - FLAM_C SINE Alu 0 133 1 31 0 0 0 chr9 98070747 98070778 -19791849 + AT_rich Low_complexity Low_complexity 1 31 0 276 222 14 0 chr9 98070779 98070851 -19791776 + L1PA8A LINE L1 5388 5460 -671 274 332 56 9 chr9 98070945 98071110 -19791517 - MIR SINE MIR -57 205 33 276 309 74 74 chr9 98071485 98071518 -19791109 + MIR3 SINE MIR 19 51 -157 2137 128 0 22 chr9 98071518 98071831 -19790796 + AluSx SINE Alu 1 306 -6 276 309 74 74 chr9 98071831 98071972 -19790655 + MIR3 SINE MIR 50 193 -15 846 225 15 5 chr9 98072571 98072771 -19789856 - MER3 DNA MER1_type -6 203 2 308 268 19 85 chr9 98074499 98074642 -19787985 + MIR SINE MIR 8 138 -70 304 301 44 44 chr9 98075630 98075766 -19786861 - L2 LINE L2 -205 3067 2932 186 43 0 0 chr9 98075785 98075808 -19786819 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 405 271 8 39 chr9 98077449 98077578 -19785049 - L2 LINE L2 -216 3056 2932 240 380 13 20 chr9 98078038 98078188 -19784439 + L2 LINE L2 2935 3083 -189 22 35 0 0 chr9 98078343 98078372 -19784255 + AT_rich Low_complexity Low_complexity 1 29 0 515 316 73 0 chr9 98078475 98078652 -19783975 + MIR SINE MIR 60 249 -13 181 167 0 0 chr9 98079643 98079673 -19782954 + MIR SINE MIR 131 160 -102 250 342 58 11 chr9 98079934 98080124 -19782503 + L2 LINE L2 2313 2511 -803 686 258 0 7 chr9 98080440 98080595 -19782032 - MER96 DNA MER1_type? 0 175 22 288 163 20 0 chr9 98080600 98080649 -19781978 - MER5A DNA MER1_type -136 53 4 236 380 70 68 chr9 98080747 98081102 -19781525 + L2 LINE L2 2916 3271 -1 267 275 88 0 chr9 98081280 98081360 -19781267 - L2 LINE L2 -18 3254 3168 252 59 0 0 chr9 98081399 98081433 -19781194 + (TG)n Simple_repeat Simple_repeat 1 34 0 181 221 29 0 chr9 98081475 98081543 -19781084 + (TA)n Simple_repeat Simple_repeat 2 71 0 215 330 59 8 chr9 98081551 98081669 -19780958 + MIR SINE MIR 73 196 -66 252 238 0 32 chr9 98083159 98083222 -19779405 + MLT1K LTR MaLR 181 241 -347 2442 70 0 0 chr9 98083578 98083880 -19778747 + AluY SINE Alu 1 302 -9 190 295 57 48 chr9 98083966 98084071 -19778556 - MIR SINE MIR -110 152 47 316 202 191 55 chr9 98084243 98084426 -19778201 - MLT1A1 LTR MaLR -157 208 1 * 357 286 113 20 chr9 98084426 98084627 -19778000 - MER69 DNA AcHobo -1003 223 4 22 0 0 0 chr9 98084729 98084751 -19777876 + AT_rich Low_complexity Low_complexity 1 22 0 803 233 9 47 chr9 98084816 98085031 -19777596 - MER3 DNA MER1_type 0 209 3 2083 114 3 31 chr9 98085193 98085510 -19777117 - AluSg SINE Alu -2 308 1 400 263 91 34 chr9 98085641 98085816 -19776811 - MIR SINE MIR -57 205 21 189 107 0 0 chr9 98086617 98086645 -19775982 + (CA)n Simple_repeat Simple_repeat 1 28 0 281 98 0 20 chr9 98087093 98087144 -19775483 + (TG)n Simple_repeat Simple_repeat 1 50 0 256 300 77 46 chr9 98087821 98087951 -19774676 - L2 LINE L2 0 3313 3180 183 398 41 18 chr9 98088157 98088378 -19774249 - L2 LINE L2 -550 2764 2539 206 0 0 65 chr9 98088471 98088502 -19774125 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 1873 131 3 70 chr9 98088692 98089021 -19773606 - AluSx SINE Alu -5 307 1 449 327 23 9 chr9 98089057 98089271 -19773356 + LTR50 LTR ERVL 389 605 -190 282 270 97 32 chr9 98089244 98089429 -19773198 + LTR33A LTR ERVL 327 523 0 * 211 318 5 90 chr9 98090438 98090661 -19771966 - L2 LINE L2 -830 2484 2281 2247 89 3 0 chr9 98090781 98091073 -19771554 + AluY SINE Alu 1 293 -18 183 348 14 14 chr9 98091789 98091858 -19770769 + MIR3 SINE MIR 4 72 -136 261 397 40 23 chr9 98092028 98092202 -19770425 - MIR3 SINE MIR -17 191 15 366 80 0 0 chr9 98092203 98092253 -19770374 + (TTC)n Simple_repeat Simple_repeat 1 50 0 27 49 0 0 chr9 98092972 98093013 -19769614 + AT_rich Low_complexity Low_complexity 1 41 0 357 313 87 43 chr9 98093286 98093494 -19769133 - L1ME LINE L1 -509 5657 5441 29 0 0 0 chr9 98094211 98094240 -19768387 + AT_rich Low_complexity Low_complexity 1 29 0 252 241 145 92 chr9 98094690 98094897 -19767730 + MIR SINE MIR 45 262 0 2499 87 0 0 chr9 98095038 98095348 -19767279 + AluY SINE Alu 1 310 -1 2287 45 0 0 chr9 98095736 98096000 -19766627 + AluY SINE Alu 35 298 -13 911 182 13 0 chr9 98096142 98096296 -19766331 + FRAM SINE Alu 1 155 -21 396 0 0 0 chr9 98097555 98097599 -19765028 + (A)n Simple_repeat Simple_repeat 1 44 0 400 333 14 14 chr9 98098443 98098590 -19764037 + MIR SINE MIR 2 148 -114 1864 151 10 16 chr9 98098969 98099273 -19763354 + AluSx SINE Alu 1 302 -10 211 236 0 56 chr9 98099522 98099594 -19763033 + CT-rich Low_complexity Low_complexity 2 69 0 212 98 0 24 chr9 98100165 98100206 -19762421 + (GA)n Simple_repeat Simple_repeat 1 40 0 275 331 16 0 chr9 98100210 98100337 -19762290 + GA-rich Low_complexity Low_complexity 2 130 0 278 194 14 0 chr9 98100351 98100423 -19762204 + GA-rich Low_complexity Low_complexity 2 74 0 192 350 49 32 chr9 98100832 98100955 -19761672 + MIR3 SINE MIR 36 160 -48 1050 52 7 0 chr9 98101283 98101419 -19761208 - L1PA5 LINE L1 0 6154 6018 327 265 123 29 chr9 98101421 98101591 -19761036 - MER102b DNA MER1_type -12 329 144 351 327 28 9 chr9 98102617 98102724 -19759903 + L2 LINE L2 3142 3250 -22 203 348 17 42 chr9 98102963 98103081 -19759546 + MIR SINE MIR 33 147 -61 2240 127 8 30 chr9 98103092 98103463 -19759164 + THE1B LTR MaLR 1 363 -1 198 0 0 0 chr9 98103495 98103517 -19759110 + (T)n Simple_repeat Simple_repeat 1 22 0 1882 133 0 0 chr9 98103517 98103773 -19758854 - AluSx SINE Alu -56 256 1 443 316 68 11 chr9 98105316 98105493 -19757134 + MIR SINE MIR 51 237 -25 806 237 50 28 chr9 98105703 98106061 -19756566 - MER69 DNA AcHobo -214 2312 1947 679 227 12 18 chr9 98106057 98106220 -19756407 - MER69 DNA AcHobo -829 397 236 * 580 235 17 57 chr9 98106236 98106466 -19756161 - MLT1A1 LTR MaLR 0 365 145 772 310 61 9 chr9 98156467 98156809 -19705818 + L1ME3A LINE L1 5803 6162 -8 21 0 0 0 chr9 98157062 98157083 -19705544 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 98157115 98157137 -19705490 + AT_rich Low_complexity Low_complexity 1 22 0 190 326 70 70 chr9 98157449 98157535 -19705092 + L2 LINE L2 2983 3068 -204 7011 57 26 0 chr9 98157578 98158452 -19704175 - MER11D LTR ERVK 0 897 1 305 310 109 23 chr9 98158459 98158633 -19703994 + L2 LINE L2 3122 3310 -3 749 241 13 53 chr9 98158868 98159096 -19703531 - MER20 DNA MER1_type 0 219 1 315 379 40 23 chr9 98160088 98160265 -19702362 + L2 LINE L2 2560 2739 -575 198 327 79 82 chr9 98160570 98160873 -19701754 + L2 LINE L2 2971 3272 0 1153 200 91 15 chr9 98160884 98161165 -19701462 + MER61B LTR ERV1 1 396 -29 340 323 8 8 chr9 98161336 98161466 -19701161 + CT-rich Low_complexity Low_complexity 1 130 0 452 296 168 48 chr9 98161470 98161882 -19700745 - L2 LINE L2 -2 3311 2851 436 312 72 36 chr9 98162075 98162113 -19700514 + MLT1L LTR MaLR 116 151 -464 410 303 76 20 chr9 98162113 98162311 -19700316 + MER63A DNA MER1_type 2 210 0 436 312 72 36 chr9 98162311 98162522 -19700105 + MLT1L LTR MaLR 151 374 -241 232 339 24 32 chr9 98162669 98162793 -19699834 - MIR3 SINE MIR -41 167 45 703 222 12 0 chr9 98162920 98163087 -19699540 + L1PA16 LINE L1 5998 6166 0 1254 283 28 30 chr9 98163305 98163807 -19698820 - L1ME3A LINE L1 -2 6168 5668 270 233 0 0 chr9 98163809 98163869 -19698758 + Tigger1 DNA MER2_type 1 60 -2358 15781 29 2 2 chr9 98163903 98166557 -19696070 - L1PA4 LINE L1 -3 6152 3501 1364 166 21 0 chr9 98166557 98166784 -19695843 + Tigger1 DNA MER2_type 47 278 -2140 1909 194 35 30 chr9 98166784 98167330 -19695297 + MLT2A2 LTR ERVL 1 553 -1 7332 137 13 21 chr9 98167332 98168536 -19694091 + Tigger1 DNA MER2_type 283 1477 -941 5396 247 33 12 chr9 98168543 98171066 -19691561 + L1PBa LINE L1 3 1643 -5220 5367 147 25 13 chr9 98171066 98172004 -19690623 + Tigger1 DNA MER2_type 1465 2413 -5 362 266 55 0 chr9 98172005 98172114 -19690513 - L1ME3A LINE L1 -501 5669 5555 * 1143 214 53 8 chr9 98172098 98172360 -19690267 - L1MC2 LINE L1 -291 6053 5780 515 258 28 52 chr9 98172362 98172614 -19690013 - L1MCb LINE L1 -3653 2911 2666 931 327 23 10 chr9 98172623 98173011 -19689616 - L1MCb LINE L1 -5652 393 1 239 227 18 55 chr9 98173032 98173142 -19689485 + T-rich Low_complexity Low_complexity 2 107 0 23 54 0 0 chr9 98173506 98173543 -19689084 + AT_rich Low_complexity Low_complexity 1 37 0 208 422 16 8 chr9 98173637 98173765 -19688862 - MIR SINE MIR -63 145 17 576 326 194 7 chr9 98174037 98174460 -19688167 + L2 LINE L2 2236 2737 -577 180 336 149 0 chr9 98174546 98174653 -19687974 + L2 LINE L2 3150 3272 0 289 322 99 8 chr9 98175474 98175595 -19687032 - MER102a DNA MER1_type -1 329 198 22 56 0 0 chr9 98177817 98177853 -19684774 + AT_rich Low_complexity Low_complexity 1 36 0 21 82 0 0 chr9 98179287 98179336 -19683291 + AT_rich Low_complexity Low_complexity 1 49 0 22 35 0 0 chr9 98179439 98179468 -19683159 + AT_rich Low_complexity Low_complexity 1 29 0 329 289 0 0 chr9 98181194 98181277 -19681350 + (TAAG)n Simple_repeat Simple_repeat 3 85 0 21 57 0 0 chr9 98181891 98181926 -19680701 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr9 98187678 98187708 -19674919 + AT_rich Low_complexity Low_complexity 1 30 0 200 272 17 35 chr9 98188354 98188527 -19674100 + (TAA)n Simple_repeat Simple_repeat 3 172 0 2405 82 0 0 chr9 98189497 98189791 -19672836 + AluSq SINE Alu 1 294 -19 228 409 5 48 chr9 98189841 98190027 -19672600 - MIR SINE MIR -65 197 20 34 55 0 0 chr9 98190317 98190372 -19672255 + AT_rich Low_complexity Low_complexity 1 55 0 1196 261 130 26 chr9 98190486 98190842 -19671785 + L1ME1 LINE L1 5296 5614 -552 453 19 0 0 chr9 98190842 98190896 -19671731 + (CA)n Simple_repeat Simple_repeat 2 55 0 1196 261 130 26 chr9 98190896 98191201 -19671426 + L1ME1 LINE L1 5614 6025 -141 262 159 102 34 chr9 98191207 98191295 -19671332 - MER53 DNA DNA -88 101 8 290 149 0 0 chr9 98191304 98191351 -19671276 + L1ME3 LINE L1 6016 6062 -100 22 0 0 0 chr9 98191442 98191464 -19671163 + AT_rich Low_complexity Low_complexity 1 22 0 2021 103 7 0 chr9 98191746 98192017 -19670610 + AluSq SINE Alu 34 306 -7 417 340 0 14 chr9 98192905 98193049 -19669578 + MIR SINE MIR 7 148 -114 2473 81 3 0 chr9 98193173 98193481 -19669146 + AluSp SINE Alu 1 309 -4 262 344 86 19 chr9 98194920 98195152 -19667475 + MIR SINE MIR 19 260 -2 926 220 0 0 chr9 98195216 98195384 -19667243 - AluJb SINE Alu -8 304 137 526 293 113 5 chr9 98195461 98195673 -19666954 - MIR SINE MIR -25 237 3 519 238 24 55 chr9 98195872 98196036 -19666591 - MLT1I LTR MaLR -2 407 249 225 0 0 0 chr9 98196068 98196093 -19666534 + (TG)n Simple_repeat Simple_repeat 2 26 0 1628 116 37 35 chr9 98196117 98196440 -19666187 - L1PA13 LINE L1 0 6172 5886 285 257 28 69 chr9 98196474 98196604 -19666023 - MLT1I LTR MaLR -206 203 81 448 282 0 57 chr9 98196680 98196804 -19665823 + L2 LINE L2 3191 3307 -6 1003 101 5 28 chr9 98197229 98197447 -19665180 + (TTCC)n Simple_repeat Simple_repeat 1 213 0 22 0 0 0 chr9 98197816 98197838 -19664789 + AT_rich Low_complexity Low_complexity 1 22 0 235 333 0 0 chr9 98197998 98198079 -19664548 + MIR SINE MIR 174 254 -8 684 196 0 23 chr9 98198331 98198464 -19664163 - FLAM_C SINE Alu -2 141 12 473 318 88 9 chr9 98198532 98198749 -19663878 - MLT1J LTR MaLR -138 373 140 286 297 99 0 chr9 98198907 98199008 -19663619 - L2 LINE L2 0 3272 3162 237 280 53 0 chr9 98199408 98199483 -19663144 + MLT1I LTR MaLR 71 149 -260 294 163 244 0 chr9 98199634 98199720 -19662907 + MLT1I LTR MaLR 278 384 -25 554 327 105 23 chr9 98200024 98200290 -19662337 + MLT1K LTR MaLR 88 375 -213 401 227 52 0 chr9 98200469 98200566 -19662061 - L1MD3 LINE L1 -107 7888 7787 2194 159 17 17 chr9 98200590 98201011 -19661616 - L1MA8 LINE L1 -5 6286 5866 398 117 0 0 chr9 98201011 98201071 -19661556 + L1MA8 LINE L1 5825 5884 -407 1373 256 103 17 chr9 98201073 98201541 -19661086 - L1MD2 LINE L1 -184 6175 5668 192 336 42 35 chr9 98201891 98202034 -19660593 - L2 LINE L2 -996 2318 2175 201 74 0 0 chr9 98202346 98202373 -19660254 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 26 0 0 0 chr9 98202373 98202399 -19660228 + AT_rich Low_complexity Low_complexity 1 26 0 227 300 14 0 chr9 98202687 98202757 -19659870 + MIR SINE MIR 73 143 -65 204 339 60 60 chr9 98202935 98203183 -19659444 + L2 LINE L2 2698 2945 -369 211 316 92 46 chr9 98203229 98203381 -19659246 + L2 LINE L2 3112 3270 -43 216 97 0 0 chr9 98204814 98204845 -19657782 + (T)n Simple_repeat Simple_repeat 1 31 0 402 269 0 29 chr9 98205406 98205510 -19657117 + MIR3 SINE MIR 82 182 -26 2279 91 3 0 chr9 98205862 98206158 -19656469 + AluSp SINE Alu 1 297 -16 2076 297 100 10 chr9 98207254 98207553 -19655074 + L2 LINE L2 1984 2255 -1058 463 140 11 11 chr9 98207553 98207646 -19654981 + L1MA10 LINE L1 6227 6319 -15 2076 297 100 10 chr9 98207646 98208333 -19654294 + L2 LINE L2 2255 3069 -244 410 308 17 8 chr9 98208362 98208482 -19654145 + L2 LINE L2 3191 3311 -2 453 315 41 58 chr9 98209906 98209967 -19652660 + MIR SINE MIR 5 66 -196 2136 110 17 3 chr9 98209967 98210259 -19652368 - AluSc SINE Alu -13 296 1 453 315 41 58 chr9 98210259 98210459 -19652168 + MIR SINE MIR 66 262 0 222 392 69 0 chr9 98210807 98210937 -19651690 - MIR3 SINE MIR -24 184 46 2364 105 0 0 chr9 98211299 98211604 -19651023 + AluSg SINE Alu 3 307 -3 186 133 0 0 chr9 98212226 98212256 -19650371 + (CA)n Simple_repeat Simple_repeat 1 30 0 763 151 38 27 chr9 98212367 98212553 -19650074 - MER53 DNA DNA 0 189 2 243 200 0 0 chr9 98212754 98212799 -19649828 - L1ME LINE L1 -410 5760 5716 572 271 35 31 chr9 98212847 98213076 -19649551 - L1ME LINE L1 -448 5722 5493 352 108 39 54 chr9 98213077 98213206 -19649421 + (TCTA)n Simple_repeat Simple_repeat 2 128 0 805 260 84 20 chr9 98213214 98213806 -19648821 - L1ME LINE L1 -697 5467 4838 275 346 115 19 chr9 98213947 98214268 -19648359 - L2 LINE L2 -94 3219 2868 213 320 52 64 chr9 98214984 98215156 -19647471 + MIR SINE MIR 37 206 -56 408 287 18 66 chr9 98216062 98216124 -19646503 - MIR3 SINE MIR -2 206 143 898 180 93 0 chr9 98216124 98216296 -19646331 - MER5A DNA MER1_type 0 189 2 408 287 18 66 chr9 98216296 98216400 -19646227 - MIR3 SINE MIR -65 143 48 538 157 20 20 chr9 98216809 98216911 -19645716 + CT-rich Low_complexity Low_complexity 3 104 0 429 109 0 0 chr9 98217015 98217079 -19645548 + (TTCC)n Simple_repeat Simple_repeat 4 67 0 711 206 0 0 chr9 98217084 98217215 -19645412 - FLAM_A SINE Alu -2 131 1 207 100 0 0 chr9 98217338 98217368 -19645259 + (TG)n Simple_repeat Simple_repeat 2 31 0 265 254 66 52 chr9 98217397 98217610 -19645017 - MER113 DNA MER1_type? -304 217 2 2163 152 40 3 chr9 98218125 98218500 -19644127 + MLT1B LTR MaLR 1 389 -1 27 81 0 0 chr9 98219239 98219301 -19643326 + AT_rich Low_complexity Low_complexity 1 62 0 889 259 46 11 chr9 98219320 98219667 -19642960 - L1ME4a LINE L1 -81 6040 5682 297 243 14 0 chr9 98219704 98219774 -19642853 - L1ME4a LINE L1 -515 5606 5536 800 287 46 30 chr9 98219789 98220117 -19642510 - MLT1I LTR MaLR -17 392 60 340 263 170 13 chr9 98220221 98220445 -19642182 - L1ME4a LINE L1 -2293 5515 5257 326 341 111 0 chr9 98220796 98220931 -19641696 + MIR3 SINE MIR 5 154 -54 243 258 0 0 chr9 98220980 98221042 -19641585 - MER117 DNA MER1_type -6 191 130 24 0 0 0 chr9 98221931 98221955 -19640672 + AT_rich Low_complexity Low_complexity 1 24 0 2133 229 16 46 chr9 98223095 98223260 -19639367 - MLT1F LTR MaLR -4 538 370 2345 88 3 0 chr9 98223260 98223555 -19639072 + AluSx SINE Alu 1 296 -16 2133 229 16 46 chr9 98223555 98223934 -19638693 - MLT1F LTR MaLR -172 370 10 2702 142 56 2 chr9 98224205 98224635 -19637992 + MSTB2 LTR MaLR 1 453 -4 1664 205 0 0 chr9 98224885 98225197 -19637430 - AluJb SINE Alu 0 312 1 181 220 0 40 chr9 98225456 98225506 -19637121 - L2 LINE L2 -652 2662 2615 2455 298 90 62 chr9 98225775 98227279 -19635348 + L2 LINE L2 1734 3294 -19 226 293 13 0 chr9 98227631 98227706 -19634921 + L2 LINE L2 2985 3060 -212 600 337 0 10 chr9 98228036 98228235 -19634392 - MIR SINE MIR -18 244 48 24 67 0 0 chr9 98228861 98228906 -19633721 + AT_rich Low_complexity Low_complexity 1 45 0 4073 84 11 0 chr9 98228998 98229546 -19633081 + MER41A LTR ERV1 1 554 0 550 308 143 36 chr9 98229588 98229974 -19632653 + MLT1J2 LTR MaLR 24 450 0 249 347 62 23 chr9 98232034 98232210 -19630417 + L3 LINE CR1 1112 1294 -283 22 0 0 0 chr9 98232898 98232920 -19629707 + AT_rich Low_complexity Low_complexity 1 22 0 215 371 69 0 chr9 98233966 98234082 -19628545 + L3 LINE CR1 1293 1416 -161 431 318 46 26 chr9 98234131 98234282 -19628345 + L3 LINE CR1 1412 1565 -12 1508 213 3 3 chr9 98234833 98235162 -19627465 - L1MC3 LINE L1 -4 7781 7453 1376 238 36 20 chr9 98235172 98235531 -19627096 + MLT1A2 LTR MaLR 11 374 0 1909 198 129 95 chr9 98235531 98235794 -19626833 - L1MC3 LINE L1 -328 7457 7204 251 274 0 0 chr9 98235794 98235856 -19626771 - MLT1F1 LTR MaLR -442 125 64 1909 198 129 95 chr9 98235856 98236212 -19626415 - L1MC3 LINE L1 -581 7204 6754 30 0 0 0 chr9 98236213 98236243 -19626384 + AT_rich Low_complexity Low_complexity 1 30 0 8192 172 38 7 chr9 98236316 98237329 -19625298 + L1M1 LINE L1 12 1083 -6482 261 0 0 0 chr9 98237329 98237358 -19625269 + (CAAAA)n Simple_repeat Simple_repeat 1 29 0 8192 172 38 7 chr9 98237358 98237770 -19624857 + L1M1 LINE L1 1083 1481 -6084 21 82 0 0 chr9 98238452 98238501 -19624126 + AT_rich Low_complexity Low_complexity 1 49 0 13199 183 21 28 chr9 98240810 98241041 -19621586 + L1MEc LINE L1 2960 3191 -4374 2249 115 7 3 chr9 98241041 98241346 -19621281 + AluSg SINE Alu 1 306 -4 13199 183 21 28 chr9 98241346 98243554 -19619073 + L1MEc LINE L1 3191 5372 -2193 2162 127 0 6 chr9 98243554 98243869 -19618758 + AluSq SINE Alu 1 313 0 13199 183 21 28 chr9 98243869 98245150 -19617477 + L1MEc LINE L1 5372 6661 -904 303 269 13 0 chr9 98245151 98245229 -19617398 - L1MC4 LINE L1 -1350 6692 6614 265 169 13 52 chr9 98245232 98245309 -19617318 + (TA)n Simple_repeat Simple_repeat 2 75 0 353 233 0 83 chr9 98245452 98245585 -19617042 - L1MA4 LINE L1 -60 6240 6119 2266 110 3 0 chr9 98245587 98245897 -19616730 + AluY SINE Alu 1 311 0 298 195 32 24 chr9 98246134 98246257 -19616370 + (TTATA)n Simple_repeat Simple_repeat 1 124 0 192 92 46 46 chr9 98246258 98246323 -19616304 + (TATAA)n Simple_repeat Simple_repeat 3 67 0 245 296 99 31 chr9 98247344 98247506 -19615121 + L2 LINE L2 2876 3048 -265 5163 180 17 17 chr9 98247564 98249367 -19613260 - L1PA15 LINE L1 -21 6795 4995 6094 225 20 5 chr9 98249368 98250854 -19611773 + L1P LINE L1 2841 4348 -1798 4054 220 9 9 chr9 98250856 98252081 -19610546 - L1PA15 LINE L1 -4110 2687 1447 668 286 94 27 chr9 98252148 98252445 -19610182 - L2 LINE L2 -368 2946 2630 1516 213 7 3 chr9 98252530 98252826 -19609801 - AluJo SINE Alu -15 297 1 244 143 0 0 chr9 98253702 98253744 -19608883 + Alu SINE Alu 121 162 -141 1825 102 4 0 chr9 98253744 98253980 -19608647 + AluSx SINE Alu 60 296 -16 21 36 0 0 chr9 98255199 98255227 -19607400 + AT_rich Low_complexity Low_complexity 1 28 0 186 43 0 0 chr9 98255256 98255279 -19607348 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 621 327 91 34 chr9 98255285 98255802 -19606825 - L2 LINE L2 -8 3305 2771 213 342 25 42 chr9 98255962 98256082 -19606545 + L2 LINE L2 3155 3272 0 232 197 61 30 chr9 98256110 98256176 -19606451 - MIR SINE MIR -105 157 90 2039 139 0 10 chr9 98257378 98257673 -19604954 + AluSg SINE Alu 2 293 -17 500 337 22 6 chr9 98257806 98257987 -19604640 - MER91B DNA MER1_type -5 185 2 314 267 169 46 chr9 98258186 98258381 -19604246 - MIR SINE MIR -14 248 30 317 297 79 0 chr9 98258536 98258637 -19603990 + MER5A DNA MER1_type 1 109 -80 204 67 0 0 chr9 98259880 98259910 -19602717 + (GA)n Simple_repeat Simple_repeat 1 30 0 237 178 0 0 chr9 98261714 98261759 -19600868 + (TCCA)n Simple_repeat Simple_repeat 4 48 0 411 260 29 53 chr9 98262083 98262291 -19600336 - MER3 DNA MER1_type -5 204 2 363 288 120 42 chr9 98262583 98262945 -19599682 - MLT1H LTR MaLR -16 539 130 189 233 0 0 chr9 98264132 98264175 -19598452 + L2 LINE L2 3271 3313 0 22 0 0 0 chr9 98264327 98264349 -19598278 + AT_rich Low_complexity Low_complexity 1 22 0 3297 38 0 2 chr9 98264359 98264757 -19597870 + L1PA7 LINE L1 5755 6151 -3 269 237 8 23 chr9 98264795 98264926 -19597701 + GA-rich Low_complexity Low_complexity 2 130 0 229 292 22 11 chr9 98265240 98265329 -19597298 - MIR SINE MIR -68 194 105 349 221 24 55 chr9 98265365 98265492 -19597135 + L1ME LINE L1 5473 5595 -526 407 164 0 0 chr9 98265510 98265571 -19597056 + AluJ/FLAM SINE Alu 3 63 -249 279 338 8 30 chr9 98266517 98266650 -19595977 + MIR SINE MIR 15 144 -118 242 358 68 27 chr9 98267248 98267396 -19595231 + MIR SINE MIR 69 222 -40 456 304 0 47 chr9 98268083 98268254 -19594373 + MIR SINE MIR 21 183 -79 352 302 226 16 chr9 98268539 98268787 -19593840 + MLT1K LTR MaLR 270 569 -19 242 281 37 0 chr9 98268807 98268889 -19593738 - MIR SINE MIR -108 154 70 321 356 31 37 chr9 98268898 98269061 -19593566 + MIR SINE MIR 14 175 -87 186 290 14 0 chr9 98269371 98269440 -19593187 - L2 LINE L2 -692 2622 2553 335 306 40 16 chr9 98269953 98270077 -19592550 + MIR SINE MIR 3 129 -133 2250 112 16 0 chr9 98270802 98271106 -19591521 - AluSx SINE Alu -3 309 1 463 297 63 57 chr9 98271128 98271527 -19591100 + LTR33A LTR ERVL 105 516 -7 1732 244 90 43 chr9 98271527 98272113 -19590514 - MLT1E2 LTR MaLR 0 626 13 582 307 194 19 chr9 98272392 98272819 -19589808 + L3 LINE CR1 741 1242 -335 778 173 65 0 chr9 98272880 98273065 -19589562 + L1MB4 LINE L1 5984 6180 0 247 351 27 18 chr9 98273140 98273251 -19589376 - MER5A DNA MER1_type -8 181 70 207 0 0 0 chr9 98273763 98273786 -19588841 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 422 280 72 49 chr9 98273839 98274103 -19588524 - LTR16A LTR ERVL -150 300 31 333 278 11 0 chr9 98274155 98274245 -19588382 + MIR SINE MIR 160 250 -12 1082 255 91 75 chr9 98274250 98274852 -19587775 + MLT1E3 LTR MaLR 1 620 -4 216 214 0 0 chr9 98274858 98274900 -19587727 + (TTA)n Simple_repeat Simple_repeat 1 42 0 294 336 18 0 chr9 98275111 98275224 -19587403 - MER94 DNA DNA -16 118 4 186 219 0 141 chr9 98275328 98275392 -19587235 - L2 LINE L2 -50 3222 3168 408 40 0 0 chr9 98275393 98275443 -19587184 + (CA)n Simple_repeat Simple_repeat 1 50 0 198 71 0 0 chr9 98275443 98275471 -19587156 + (GA)n Simple_repeat Simple_repeat 1 28 0 251 286 135 38 chr9 98276074 98276207 -19586420 - L2 LINE L2 0 3313 3168 2144 216 26 58 chr9 98276227 98276764 -19585863 - MER74A LTR ERVL 0 558 39 356 326 38 15 chr9 98276857 98276989 -19585638 + MIR3 SINE MIR 24 158 -50 306 0 0 0 chr9 98277258 98277292 -19585335 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 207 340 190 21 chr9 98277740 98278019 -19584608 + L2 LINE L2 2579 2904 -410 25 0 0 0 chr9 98278263 98278288 -19584339 + AT_rich Low_complexity Low_complexity 1 25 0 1247 54 0 0 chr9 98278331 98278480 -19584147 - AluY SINE Alu -9 302 154 1778 162 7 14 chr9 98278675 98278965 -19583662 - AluJb SINE Alu -24 288 1 1299 333 111 48 chr9 98278966 98280343 -19582284 + L2 LINE L2 1836 3311 -2 295 332 58 49 chr9 98280338 98280576 -19582051 + MIR SINE MIR 13 256 -6 * 2268 107 0 3 chr9 98280853 98281162 -19581465 + AluSq SINE Alu 1 308 -5 1498 262 54 26 chr9 98281372 98281851 -19580776 - MLT1H LTR MaLR -5 544 1 253 307 104 0 chr9 98283010 98283143 -19579484 - MIR SINE MIR -65 143 17 598 281 105 61 chr9 98283494 98284017 -19578610 + MLT1H1 LTR MaLR 10 555 0 272 271 54 100 chr9 98284151 98284391 -19578236 + MLT1H1-int LTR MaLR 316 544 -827 270 189 19 0 chr9 98285136 98285189 -19577438 - MER63 DNA MER1_type -33 1028 975 * 279 325 77 0 chr9 98285179 98285296 -19577331 - MER63 DNA MER1_type -302 760 9 635 316 152 20 chr9 98285590 98286045 -19576582 + MLT1H1 LTR MaLR 12 526 -29 278 359 1 39 chr9 98286137 98286270 -19576357 - MIR3 SINE MIR -51 157 40 28 0 0 0 chr9 98286679 98286707 -19575920 + AT_rich Low_complexity Low_complexity 1 28 0 1955 159 3 0 chr9 98286826 98287116 -19575511 - AluSx SINE Alu -21 291 1 232 299 277 0 chr9 98287572 98287709 -19574918 - MIR SINE MIR -1 261 87 351 245 61 31 chr9 98287796 98287894 -19574733 - MIR SINE MIR -127 135 35 1509 157 75 0 chr9 98288455 98288735 -19573892 + L1MA9 LINE L1 5828 6128 -184 2192 139 21 16 chr9 98288738 98289111 -19573516 - THE1C LTR MaLR 0 375 1 9632 112 39 47 chr9 98289111 98290704 -19571923 - THE1C-int LTR MaLR 0 1580 1 1172 158 154 79 chr9 98290704 98291034 -19571593 - THE1B LTR MaLR 0 364 1 828 110 5 139 chr9 98291039 98291248 -19571379 + L1MA9 LINE L1 6132 6312 0 368 357 41 25 chr9 98291535 98291731 -19570896 + MIR SINE MIR 15 213 -49 2446 128 0 6 chr9 98292596 98292962 -19569665 + THE1B LTR MaLR 1 364 0 259 229 16 0 chr9 98293215 98293276 -19569351 - MIR SINE MIR -42 220 159 937 222 15 5 chr9 98293348 98293546 -19569081 - MLT1D LTR MaLR 0 505 306 1086 155 49 8 chr9 98294065 98294310 -19568317 - L1M2 LINE L1 -773 5539 5285 289 172 30 71 chr9 98294296 98294359 -19568268 - L1MB3 LINE L1 -2 6181 6122 * 2390 128 14 3 chr9 98294359 98294719 -19567908 + THE1B LTR MaLR 1 364 0 289 172 30 71 chr9 98294719 98294754 -19567873 - L1MB3 LINE L1 -61 6122 6087 1340 153 4 8 chr9 98294759 98294994 -19567633 - L1MA4 LINE L1 -279 6021 5788 802 142 4 142 chr9 98294982 98295214 -19567413 - L1MA4 LINE L1 -819 5327 5128 * 519 266 28 0 chr9 98295234 98295377 -19567250 - MLT1D LTR MaLR -350 155 9 351 0 0 0 chr9 98295491 98295530 -19567097 + (TAA)n Simple_repeat Simple_repeat 2 40 0 423 0 0 0 chr9 98296004 98296051 -19566576 + (CA)n Simple_repeat Simple_repeat 1 47 0 216 0 0 0 chr9 98296468 98296492 -19566135 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 24 0 0 0 chr9 98297016 98297040 -19565587 + AT_rich Low_complexity Low_complexity 1 24 0 623 168 0 8 chr9 98297146 98297265 -19565362 + L1PB4 LINE L1 6039 6156 0 23 33 0 0 chr9 98298751 98298781 -19563846 + AT_rich Low_complexity Low_complexity 1 30 0 405 261 0 0 chr9 98299091 98299206 -19563421 + (TG)n Simple_repeat Simple_repeat 2 116 0 252 369 19 38 chr9 98299913 98300070 -19562557 - L2 LINE L2 -1 3312 3159 279 294 75 20 chr9 98300271 98300417 -19562210 + L2 LINE L2 3148 3301 -12 * 297 318 47 16 chr9 98300409 98300538 -19562089 - MIR SINE MIR -49 213 81 218 215 31 15 chr9 98300680 98300745 -19561882 + (TATAA)n Simple_repeat Simple_repeat 1 66 0 3784 152 52 14 chr9 98301023 98301761 -19560866 - L1MA6 LINE L1 0 7321 6556 11128 144 14 42 chr9 98301765 98303767 -19558860 + Tigger1 DNA MER2_type 1 1946 -472 9019 225 128 30 chr9 98303769 98306681 -19555946 - L1MA6 LINE L1 -1078 6089 2938 4786 81 6 1 chr9 98306681 98307336 -19555291 - L1PA8 LINE L1 -1 6171 5514 9019 225 128 30 chr9 98307336 98308790 -19553837 - L1MA6 LINE L1 -4229 2938 1628 1766 326 13 27 chr9 98308931 98309627 -19553000 - L1MA6 LINE L1 -6478 690 5 753 333 73 22 chr9 98310565 98311037 -19551590 + MLT1H LTR MaLR 5 549 0 182 281 123 0 chr9 98311416 98311473 -19551154 - L2 LINE L2 -6 3307 3244 207 232 36 0 chr9 98311640 98311696 -19550931 + (TATG)n Simple_repeat Simple_repeat 2 59 0 216 0 0 0 chr9 98311809 98311833 -19550794 + (TG)n Simple_repeat Simple_repeat 1 24 0 1511 191 4 0 chr9 98311870 98312137 -19550490 + AluJo SINE Alu 12 279 -33 186 43 0 0 chr9 98312140 98312163 -19550464 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 761 112 35 0 chr9 98313222 98313338 -19549289 - L1PA10 LINE L1 -5 6163 6044 421 302 63 13 chr9 98313352 98313511 -19549116 - MIR SINE MIR -59 203 37 377 273 10 10 chr9 98313518 98313617 -19549010 - L2 LINE L2 0 3313 3215 463 264 82 50 chr9 98313620 98313802 -19548825 - L2 LINE L2 -1377 1937 1750 213 39 0 0 chr9 98313847 98313873 -19548754 + (TA)n Simple_repeat Simple_repeat 2 27 0 238 346 19 0 chr9 98313895 98314002 -19548625 - L2 LINE L2 -1747 1567 1459 829 76 28 14 chr9 98314063 98314208 -19548419 + (TTTC)n Simple_repeat Simple_repeat 1 147 0 232 86 0 29 chr9 98314243 98314278 -19548349 - AluJb SINE Alu -143 160 127 869 137 0 0 chr9 98314295 98314419 -19548208 - AluJb SINE Alu -188 124 1 544 305 37 11 chr9 98314430 98314620 -19548007 - L2 LINE L2 -1905 1409 1215 317 375 12 19 chr9 98315997 98316157 -19546470 + L2 LINE L2 2649 2807 -507 247 94 0 0 chr9 98316165 98316197 -19546430 + U2 snRNA snRNA 4 35 -153 786 345 33 47 chr9 98316557 98317009 -19545618 + L2 LINE L2 2395 2840 -474 513 333 147 3 chr9 98317026 98317311 -19545316 + L2 LINE L2 2988 3313 0 2032 152 0 0 chr9 98317672 98317982 -19544645 - AluSx SINE Alu 0 312 3 339 358 21 15 chr9 98318095 98318245 -19544382 + MIR SINE MIR 6 153 -63 270 261 0 0 chr9 98318999 98319064 -19543563 - MIR SINE MIR -116 146 82 205 349 229 10 chr9 98319715 98319907 -19542720 - MIR SINE MIR 0 262 29 190 270 226 15 chr9 98320423 98320560 -19542067 - MIR SINE MIR -11 251 86 276 77 0 0 chr9 98321130 98321169 -19541458 + (CA)n Simple_repeat Simple_repeat 2 40 0 301 261 0 0 chr9 98321446 98321515 -19541112 - MLT1K LTR MaLR -11 577 509 247 259 0 0 chr9 98321826 98321880 -19540747 - MLT1K LTR MaLR -347 241 188 213 316 0 0 chr9 98322512 98322569 -19540058 - L2 LINE L2 -8 3305 3249 181 422 31 12 chr9 98322654 98322815 -19539812 + L2 LINE L2 2808 2971 -301 1966 138 0 20 chr9 98322820 98323118 -19539509 - AluSx SINE Alu -17 295 4 259 302 127 40 chr9 98324054 98324180 -19538447 + MIR SINE MIR 35 171 -91 180 135 0 0 chr9 98324328 98324365 -19538262 + (TA)n Simple_repeat Simple_repeat 2 38 0 213 224 9 28 chr9 98324896 98325003 -19537624 + (ATG)n Simple_repeat Simple_repeat 2 106 0 370 340 126 10 chr9 98325357 98325563 -19537064 + MIR SINE MIR 16 245 -17 190 330 99 22 chr9 98326300 98326391 -19536236 + MIR SINE MIR 74 171 -91 * 431 305 59 42 chr9 98326383 98326619 -19536008 - MIR SINE MIR -15 247 8 769 226 69 29 chr9 98326848 98327052 -19535575 - MER20 DNA MER1_type -1 218 7 454 270 20 46 chr9 98327266 98327418 -19535209 + MIR SINE MIR 19 166 -96 457 301 8 0 chr9 98327607 98327730 -19534897 + L2 LINE L2 3190 3313 0 26 0 0 0 chr9 98327845 98327871 -19534756 + AT_rich Low_complexity Low_complexity 1 26 0 491 272 51 56 chr9 98328293 98328488 -19534139 + MIR SINE MIR 57 250 -12 302 301 86 11 chr9 98329340 98329433 -19533194 - L2 LINE L2 -25 3247 3148 252 170 0 0 chr9 98329685 98329738 -19532889 + (CA)n Simple_repeat Simple_repeat 2 54 0 232 182 0 0 chr9 98330873 98330928 -19531699 - L1MC4 LINE L1 -1340 6702 6648 388 359 38 27 chr9 98331421 98331758 -19530869 + L1M4c LINE L1 2222 2559 -3823 33 0 0 0 chr9 98332120 98332153 -19530474 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr9 98332279 98332302 -19530325 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr9 98333022 98333050 -19529577 + AT_rich Low_complexity Low_complexity 1 28 0 267 234 52 4 chr9 98333126 98333248 -19529379 + L1M4c LINE L1 4039 4171 -2211 234 314 59 13 chr9 98333498 98333651 -19528976 + L1M4c LINE L1 4509 4668 -1714 23 33 0 0 chr9 98333732 98333762 -19528865 + AT_rich Low_complexity Low_complexity 1 30 0 252 282 56 0 chr9 98333962 98334033 -19528594 + L2 LINE L2 3194 3268 -45 307 234 117 56 chr9 98334133 98334347 -19528280 - L1ME3A LINE L1 -6 6164 5938 364 312 64 13 chr9 98334505 98334662 -19527965 - MIR SINE MIR -49 213 49 244 265 48 24 chr9 98334707 98334790 -19527837 + MIR SINE MIR 173 257 -5 521 263 94 12 chr9 98334805 98334976 -19527651 - MIR SINE MIR -68 194 10 216 321 62 0 chr9 98336143 98336224 -19526403 - L2 LINE L2 -165 3148 3063 270 247 0 0 chr9 98336690 98336767 -19525860 + (CATA)n Simple_repeat Simple_repeat 4 80 0 959 260 79 83 chr9 98336778 98337060 -19525567 - HAL1 LINE L1 -145 2362 2080 1195 186 30 113 chr9 98337060 98337458 -19525169 - MLT1A1 LTR MaLR 0 365 1 959 260 79 83 chr9 98337458 98338233 -19524394 - HAL1 LINE L1 -427 2080 1309 337 282 0 35 chr9 98338233 98338375 -19524252 + (TA)n Simple_repeat Simple_repeat 1 137 0 461 238 64 0 chr9 98338378 98338550 -19524077 - HAL1 LINE L1 -1228 1279 1097 325 281 31 23 chr9 98338825 98338953 -19523674 - HAL1b LINE L1 -29 1319 1191 22 0 0 30 chr9 98339029 98339046 -19523581 + AT_rich Low_complexity Low_complexity 1 18 -14 2287 92 0 13 chr9 98339046 98339352 -19523275 - AluY SINE Alu -9 302 1 22 0 0 30 chr9 98339352 98339367 -19523260 + AT_rich Low_complexity Low_complexity 18 32 0 1973 192 44 0 chr9 98339372 98339762 -19522865 - L1MA8 LINE L1 -29 6262 5856 920 255 72 47 chr9 98339756 98339784 -19522843 - HAL1b LINE L1 -219 1129 1103 * 2005 59 0 0 chr9 98339784 98340037 -19522590 + L1PA5 LINE L1 5898 6150 -4 920 255 72 47 chr9 98340037 98340521 -19522106 - HAL1b LINE L1 -245 1103 604 973 191 38 0 chr9 98340533 98340743 -19521884 - MER33 DNA MER1_type -106 218 1 277 179 0 0 chr9 98340890 98340946 -19521681 - L1MD2 LINE L1 -13 6346 6291 434 288 36 22 chr9 98341045 98341184 -19521443 + L2 LINE L2 2695 2835 -479 424 298 58 68 chr9 98341219 98341545 -19521082 + L2 LINE L2 2872 3194 -119 275 253 92 23 chr9 98341555 98341642 -19520985 + MIR SINE MIR 64 156 -106 511 254 81 32 chr9 98341648 98341833 -19520794 - MIR SINE MIR -12 250 57 391 290 65 16 chr9 98341948 98342072 -19520555 - MIR SINE MIR -113 149 20 205 335 88 39 chr9 98342918 98343100 -19519527 + L3 LINE CR1 1163 1353 -224 332 311 21 25 chr9 98343127 98343254 -19519373 + MIR SINE MIR 34 161 -63 207 309 29 0 chr9 98343288 98343356 -19519271 + MIR SINE MIR 164 233 -29 22 0 0 0 chr9 98343584 98343606 -19519021 + AT_rich Low_complexity Low_complexity 1 22 0 239 286 98 38 chr9 98344016 98344149 -19518478 - L2 LINE L2 -1 3312 3172 239 260 20 40 chr9 98344169 98344269 -19518358 + L1ME LINE L1 5788 5885 -285 29 60 0 0 chr9 98344546 98344596 -19518031 + AT_rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr9 98345090 98345111 -19517516 + AT_rich Low_complexity Low_complexity 1 21 0 197 358 32 70 chr9 98345228 98345415 -19517212 + L2 LINE L2 2934 3113 -159 243 0 0 0 chr9 98346930 98346957 -19515670 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 244 283 0 0 chr9 98347715 98347775 -19514852 + L2 LINE L2 3254 3313 0 548 344 29 25 chr9 98347807 98348051 -19514576 - MIR SINE MIR 0 262 18 757 167 8 15 chr9 98348670 98348802 -19513825 - FLAM_C SINE Alu 0 133 3 819 241 34 34 chr9 98348881 98349143 -19513484 + MER58 DNA MER1_type 25 286 -2134 310 210 0 0 chr9 98349139 98349201 -19513426 + MER58 DNA MER1_type 2321 2382 -38 * 452 258 24 0 chr9 98349212 98349336 -19513291 - MER5A DNA MER1_type -51 138 12 1332 176 63 91 chr9 98350079 98350398 -19512229 - AluJo SINE Alu -2 310 1 364 240 27 0 chr9 98350398 98350473 -19512154 - MER81 DNA DNA -36 78 2 1449 215 3 11 chr9 98350502 98350786 -19511841 + AluJo SINE Alu 1 282 -30 180 0 0 0 chr9 98350789 98350809 -19511818 + (TAA)n Simple_repeat Simple_repeat 2 21 0 688 231 26 83 chr9 98351408 98351637 -19510990 - MER20 DNA MER1_type 0 219 4 292 330 46 58 chr9 98352583 98352756 -19509871 - MER5B DNA MER1_type -4 174 4 652 348 98 23 chr9 98353227 98353799 -19508828 + L2 LINE L2 2702 3309 -4 269 323 88 3 chr9 98354252 98354413 -19508214 + MIR SINE MIR 1 180 -66 207 296 241 0 chr9 98354512 98354620 -19508007 - L2 LINE L2 -2 3311 3178 21 0 0 0 chr9 98354676 98354697 -19507930 + AT_rich Low_complexity Low_complexity 1 21 0 619 247 36 17 chr9 98355300 98355567 -19507060 + L1ME LINE L1 5218 5489 -743 22 70 0 0 chr9 98356660 98356703 -19505924 + AT_rich Low_complexity Low_complexity 1 43 0 314 320 64 13 chr9 98356929 98357085 -19505542 + L1ME LINE L1 5521 5684 -437 1365 118 5 5 chr9 98357451 98357646 -19504981 - AluSg/x SINE Alu -13 299 105 199 345 103 12 chr9 98357834 98357999 -19504628 + L2 LINE L2 3007 3186 -86 2230 109 0 10 chr9 98358193 98358505 -19504122 + AluY SINE Alu 1 309 -2 389 269 83 78 chr9 98359492 98359685 -19502942 - L3 LINE CR1 -9 1568 1375 323 297 121 0 chr9 98360330 98360421 -19502206 - L2 LINE L2 -27 3286 3185 185 357 0 0 chr9 98360463 98360519 -19502108 + L2 LINE L2 3209 3264 -8 190 398 25 41 chr9 98361442 98361638 -19500989 + L2 LINE L2 2784 2976 -338 216 333 14 0 chr9 98361804 98361876 -19500751 + L2 LINE L2 3236 3308 -5 246 116 0 0 chr9 98362187 98362230 -19500397 + (TG)n Simple_repeat Simple_repeat 2 44 0 2118 118 0 37 chr9 98362382 98362704 -19499923 - AluSq SINE Alu -3 310 1 218 222 56 42 chr9 98363341 98363413 -19499214 + MIR SINE MIR 50 122 -86 1161 314 40 11 chr9 98363525 98363996 -19498631 - LTR33 LTR ERVL -21 500 16 25 0 0 0 chr9 98364774 98364799 -19497828 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr9 98365074 98365095 -19497532 + AT_rich Low_complexity Low_complexity 1 21 0 31 0 0 0 chr9 98366033 98366064 -19496563 + AT_rich Low_complexity Low_complexity 1 31 0 324 0 0 0 chr9 98366203 98366239 -19496388 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 232 304 0 0 chr9 98366316 98366372 -19496255 + L2 LINE L2 3253 3308 -5 195 319 14 0 chr9 98366454 98366523 -19496104 + MIR SINE MIR 156 225 -37 1977 170 29 18 chr9 98366749 98367132 -19495495 + MLT1B LTR MaLR 2 388 -2 279 290 54 0 chr9 98367491 98367584 -19495043 + MIR SINE MIR 100 197 -65 458 200 8 75 chr9 98367613 98367733 -19494894 + MER97c DNA MER1_type? 11 122 -968 22 0 0 0 chr9 98368098 98368120 -19494507 + AT_rich Low_complexity Low_complexity 1 22 0 249 94 23 94 chr9 98368150 98368321 -19494306 + (TA)n Simple_repeat Simple_repeat 1 159 0 795 11 0 0 chr9 98368842 98368974 -19493653 + L1PA3 LINE L1 6061 6192 0 640 301 17 6 chr9 98369183 98369359 -19493268 - MER5B DNA MER1_type 0 178 1 436 316 53 25 chr9 98369877 98370121 -19492506 - MIR SINE MIR 0 262 12 28 48 0 0 chr9 98370833 98370875 -19491752 + AT_rich Low_complexity Low_complexity 1 42 0 239 327 47 47 chr9 98371838 98371945 -19490682 + MIR3 SINE MIR 10 116 -92 369 62 0 0 chr9 98372468 98372516 -19490111 + (TC)n Simple_repeat Simple_repeat 2 49 0 197 98 24 0 chr9 98372518 98372559 -19490068 + (TAGA)n Simple_repeat Simple_repeat 4 45 0 26 0 0 0 chr9 98372560 98372586 -19490041 + AT_rich Low_complexity Low_complexity 1 26 0 277 365 48 16 chr9 98372608 98372734 -19489893 - MIR3 SINE MIR -15 193 64 218 368 87 54 chr9 98373695 98374065 -19488562 + L2 LINE L2 2830 3211 -61 284 250 71 62 chr9 98375427 98375539 -19487088 + MIR SINE MIR 84 196 -66 1514 228 50 11 chr9 98376347 98376511 -19486116 - MSTD LTR MaLR 0 396 240 1764 188 111 8 chr9 98376511 98376899 -19485728 - MSTA LTR MaLR 0 428 1 1514 228 50 11 chr9 98376899 98377115 -19485512 - MSTD LTR MaLR -156 240 1 294 294 79 54 chr9 98377122 98377506 -19485121 + MLT1J LTR MaLR 60 493 -18 195 242 55 55 chr9 98377596 98377687 -19484940 - MIR SINE MIR -66 196 106 194 292 133 9 chr9 98377659 98377772 -19484855 - MIR3 SINE MIR -74 134 8 * 22 35 0 0 chr9 98377856 98377885 -19484742 + AT_rich Low_complexity Low_complexity 1 29 0 239 338 0 25 chr9 98378239 98378319 -19484308 + MIR SINE MIR 75 152 -110 2034 133 0 3 chr9 98379414 98379708 -19482919 - AluSg SINE Alu -17 293 1 202 408 0 10 chr9 98379709 98379807 -19482820 + MIR3 SINE MIR 101 197 -11 2198 114 7 0 chr9 98380663 98380970 -19481657 - AluSc SINE Alu 0 309 1 257 183 254 14 chr9 98380970 98380999 -19481628 + MIR SINE MIR 94 115 -147 194 62 31 0 chr9 98380999 98381031 -19481596 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 257 183 254 14 chr9 98381031 98381072 -19481555 + MIR SINE MIR 115 181 -81 181 382 26 0 chr9 98381991 98382067 -19480560 - MIR SINE MIR -183 79 2 1153 220 66 133 chr9 98382606 98383307 -19479320 - MER50 LTR ERV1 0 734 81 235 280 20 40 chr9 98383371 98383471 -19479156 + L2 LINE L2 3122 3219 -94 2252 107 0 0 chr9 98384534 98384834 -19477793 - AluY SINE Alu -11 300 1 1811 229 78 49 chr9 98385225 98385580 -19477047 - L1MC/D LINE L1 -754 5605 5262 2191 131 0 3 chr9 98385580 98385893 -19476734 - AluSx SINE Alu 0 312 1 1811 229 78 49 chr9 98385893 98386645 -19475982 - L1MC/D LINE L1 -1097 5262 4359 186 338 0 15 chr9 98388085 98388153 -19474474 + L3 LINE CR1 1508 1574 -3 262 269 1 38 chr9 98388806 98388888 -19473739 - MIR SINE MIR -69 139 58 801 276 10 40 chr9 98389782 98390079 -19472548 + L1ME LINE L1 5374 5661 -509 1896 72 0 0 chr9 98390238 98390487 -19472140 - AluY SINE Alu -62 249 1 2729 220 46 34 chr9 98390538 98390870 -19471757 - L1MD2 LINE L1 -3 6356 6025 495 282 53 93 chr9 98390870 98391341 -19471286 - L1MB5 LINE L1 -165 6009 5558 185 352 0 0 chr9 98391367 98391421 -19471206 + L2 LINE L2 3241 3294 -19 200 39 0 0 chr9 98392596 98392622 -19470005 + MIR SINE MIR 227 252 -10 320 273 61 0 chr9 98393087 98393186 -19469441 - MIR SINE MIR -3 259 155 245 206 27 41 chr9 98393403 98393476 -19469151 + MIR3 SINE MIR 105 176 -32 224 384 61 0 chr9 98394035 98394134 -19468493 - L2 LINE L2 0 3272 3168 240 194 43 43 chr9 98395213 98395306 -19467321 + T-rich Low_complexity Low_complexity 4 96 0 1318 275 124 30 chr9 98395358 98395900 -19466727 + MLT1E LTR MaLR 1 593 0 1860 97 8 0 chr9 98397083 98397330 -19465297 + AluSp SINE Alu 1 249 -64 1080 313 94 17 chr9 98398744 98399213 -19463414 - L2 LINE L2 -2 3311 2807 1052 264 76 52 chr9 98399258 98399636 -19462991 - L1ME1 LINE L1 -7 6228 5833 2192 141 120 5 chr9 98399636 98400019 -19462608 - MSTA LTR MaLR 0 428 2 1052 264 76 52 chr9 98400019 98400155 -19462472 - L1ME1 LINE L1 -402 5833 5702 604 239 88 29 chr9 98400183 98400455 -19462172 - L1ME1 LINE L1 -1604 4611 4324 386 275 156 52 chr9 98400534 98401245 -19461382 - L1ME1 LINE L1 -4468 1747 1075 788 316 12 19 chr9 98401296 98401720 -19460907 - L1ME1 LINE L1 -5400 996 576 274 294 52 0 chr9 98401898 98402034 -19460593 - L1M4 LINE L1 -1796 4350 4208 307 335 19 32 chr9 98403297 98403455 -19459172 - MIR SINE MIR -22 240 85 184 213 213 0 chr9 98403451 98403512 -19459115 - L2 LINE L2 -6 3307 3234 * 282 116 0 0 chr9 98403646 98403689 -19458938 + (TGAA)n Simple_repeat Simple_repeat 4 46 0 342 302 90 50 chr9 98404278 98404500 -19458127 - MIR SINE MIR -15 247 17 197 260 208 31 chr9 98405009 98405105 -19457522 - L2 LINE L2 -19 3294 3182 1540 183 55 70 chr9 98405464 98405880 -19456747 - MER67D LTR ERV1 -104 410 1 295 344 126 20 chr9 98406048 98406199 -19456428 + MIR3 SINE MIR 42 208 0 372 266 273 0 chr9 98406503 98406642 -19455985 - MIR SINE MIR -54 208 32 180 237 51 17 chr9 98407472 98407531 -19455096 + L2 LINE L2 1677 1737 -1577 22 0 0 0 chr9 98407766 98407788 -19454839 + AT_rich Low_complexity Low_complexity 1 22 0 1564 218 30 41 chr9 98407789 98408183 -19454444 + MSTD LTR MaLR 6 395 -1 237 265 12 72 chr9 98408841 98408924 -19453703 + L2 LINE L2 3236 3313 0 521 323 64 55 chr9 98409152 98409387 -19453240 + L2 LINE L2 2810 3046 -267 302 272 16 110 chr9 98410108 98410299 -19452328 - MER5B DNA MER1_type -1 177 5 417 213 0 0 chr9 98410342 98410422 -19452205 + MER117 DNA MER1_type 18 97 -100 701 345 131 30 chr9 98410506 98410990 -19451637 - L3 LINE CR1 -50 1527 947 180 0 0 0 chr9 98410990 98411010 -19451617 + (TTAA)n Simple_repeat Simple_repeat 4 23 0 701 345 131 30 chr9 98411010 98411237 -19451390 - L3 LINE CR1 -630 947 744 291 333 49 8 chr9 98411267 98411390 -19451237 + MIR SINE MIR 48 175 -87 526 296 8 8 chr9 98411541 98411673 -19450954 - L2 LINE L2 0 3272 3141 426 313 61 0 chr9 98411933 98412048 -19450579 + L2 LINE L2 3151 3272 0 195 129 0 0 chr9 98412308 98412339 -19450288 + (TG)n Simple_repeat Simple_repeat 2 32 0 298 100 0 0 chr9 98413019 98413069 -19449558 + AluSp/q SINE Alu 254 303 0 23 0 0 0 chr9 98413256 98413279 -19449348 + AT_rich Low_complexity Low_complexity 1 23 0 261 340 26 10 chr9 98413390 98413584 -19449043 + L1ME4a LINE L1 5730 5926 -195 685 226 79 34 chr9 98413670 98413847 -19448780 - MER20 DNA MER1_type -34 185 1 360 314 32 39 chr9 98414368 98414524 -19448103 - MIR3 SINE MIR -11 197 43 21 0 0 0 chr9 98414598 98414619 -19448008 + AT_rich Low_complexity Low_complexity 1 21 0 258 143 82 0 chr9 98414684 98414733 -19447894 - L2 LINE L2 -3 3269 3217 219 295 80 25 chr9 98415252 98415379 -19447248 + MIR SINE MIR 15 157 -51 1143 250 70 45 chr9 98415743 98416187 -19446440 - LTR16A1 LTR ERVL 0 457 3 189 74 0 0 chr9 98416391 98416418 -19446209 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 814 193 0 0 chr9 98416421 98416566 -19446061 - AluJ SINE Alu -11 301 157 646 176 0 0 chr9 98416566 98416674 -19445953 - AluJ SINE Alu -204 108 1 662 329 24 8 chr9 98417908 98418154 -19444473 - MIR SINE MIR -10 252 3 431 248 106 0 chr9 98418630 98418743 -19443884 + MER94 DNA DNA 1 125 -9 249 298 8 58 chr9 98419402 98419523 -19443104 + MIR SINE MIR 69 183 -79 1124 199 34 97 chr9 98419606 98420017 -19442610 + MLT1B LTR MaLR 5 389 -1 26 30 0 0 chr9 98420051 98420084 -19442543 + AT_rich Low_complexity Low_complexity 1 33 0 449 275 112 51 chr9 98420260 98420635 -19441992 - L1ME LINE L1 -4553 1708 1311 2225 109 0 0 chr9 98420648 98420942 -19441685 + AluSg SINE Alu 1 294 -16 382 309 114 46 chr9 98421004 98421328 -19441299 - L1ME LINE L1 -5043 1039 694 1525 274 47 33 chr9 98421385 98422063 -19440564 - L1ME LINE L1 -5378 692 27 581 319 119 17 chr9 98422097 98422451 -19440176 - MLT1J LTR MaLR -51 460 71 209 168 39 26 chr9 98422680 98422835 -19439792 + (TATAA)n Simple_repeat Simple_repeat 3 159 0 199 117 62 43 chr9 98422802 98422964 -19439663 + (TTATA)n Simple_repeat Simple_repeat 5 169 0 * 58 47 0 0 chr9 98422999 98423085 -19439542 + AT_rich Low_complexity Low_complexity 1 86 0 186 173 40 0 chr9 98423085 98423160 -19439467 + (TATAA)n Simple_repeat Simple_repeat 5 82 0 21 57 0 0 chr9 98423162 98423197 -19439430 + AT_rich Low_complexity Low_complexity 1 35 0 250 130 22 22 chr9 98423548 98423594 -19439033 + MLT2C2 LTR ERVL 161 206 -258 5235 68 17 21 chr9 98423616 98424281 -19438346 - L1PA7 LINE L1 -4 6154 5479 437 32 32 0 chr9 98424281 98424344 -19438283 - AluY SINE Alu -8 303 239 5235 68 17 21 chr9 98424344 98424480 -19438147 - L1PA7 LINE L1 -679 5479 5344 305 344 0 15 chr9 98424609 98424740 -19437887 + MLT2C1 LTR ERVL 269 397 0 1306 244 82 91 chr9 98424773 98425326 -19437301 + L1ME1 LINE L1 4468 5024 -1142 326 160 0 0 chr9 98425326 98425388 -19437239 + Alu SINE Alu 1 48 -254 1306 244 82 91 chr9 98425388 98425787 -19436840 + L1ME1 LINE L1 5024 5470 -696 2315 100 3 3 chr9 98425787 98426097 -19436530 - AluSg SINE Alu 0 310 1 1306 244 82 91 chr9 98426097 98426377 -19436250 + L1ME1 LINE L1 5470 5751 -415 301 256 8 56 chr9 98426381 98426506 -19436121 + L1ME1 LINE L1 6043 6161 -5 412 297 128 9 chr9 98426516 98427157 -19435470 + L1ME4a LINE L1 4980 5684 -480 573 353 54 31 chr9 98427486 98427877 -19434750 - L2 LINE L2 -2342 972 573 766 211 16 87 chr9 98427883 98427957 -19434670 - MER45A DNA AcHobo -1409 172 94 2320 104 3 3 chr9 98427957 98428264 -19434363 + AluSx SINE Alu 1 307 -5 766 211 16 87 chr9 98428264 98428374 -19434253 - MER45A DNA AcHobo -1487 94 1 251 334 184 34 chr9 98428432 98428812 -19433815 - L2 LINE L2 -2795 519 83 409 150 158 39 chr9 98428839 98428966 -19433661 + MLT1B LTR MaLR 16 157 -233 207 321 18 0 chr9 98429442 98429498 -19433129 - L3 LINE CR1 -225 1352 1296 884 125 23 0 chr9 98429505 98429527 -19433100 - AluSg SINE Alu -160 150 130 405 0 0 0 chr9 98429527 98429572 -19433055 + (TG)n Simple_repeat Simple_repeat 2 46 0 884 125 23 0 chr9 98429572 98429677 -19432950 - AluSg SINE Alu -180 130 20 399 306 119 0 chr9 98430243 98430462 -19432165 - MIR SINE MIR 0 262 18 256 356 33 0 chr9 98430765 98430855 -19431772 - L2 LINE L2 -6 3266 3174 717 203 0 0 chr9 98431408 98431536 -19431091 + FLAM_A SINE Alu 1 128 -5 24 32 0 0 chr9 98431781 98431812 -19430815 + AT_rich Low_complexity Low_complexity 1 31 0 202 363 0 59 chr9 98432561 98432696 -19429931 + L2 LINE L2 2935 3061 -211 2246 297 71 31 chr9 98432950 98434063 -19428564 + L2 LINE L2 2150 3313 0 386 296 101 49 chr9 98434093 98434400 -19428227 + L1ME4a LINE L1 5784 6106 -15 582 236 171 43 chr9 98434523 98434803 -19427824 + MER46C DNA MER2_type 23 338 0 38 22 0 0 chr9 98436293 98436338 -19426289 + AT_rich Low_complexity Low_complexity 1 45 0 215 196 43 0 chr9 98436477 98436523 -19426104 - L2 LINE L2 -10 3262 3215 303 147 59 0 chr9 98436603 98436705 -19425922 + (TA)n Simple_repeat Simple_repeat 1 108 0 273 174 0 14 chr9 98436772 98436841 -19425786 + MER96B DNA MER1_type? 111 178 -239 613 329 104 19 chr9 98438407 98438780 -19423847 + L2 LINE L2 2635 3049 -223 219 154 0 0 chr9 98439039 98439078 -19423549 + A-rich Low_complexity Low_complexity 1 39 0 186 342 0 13 chr9 98439093 98439169 -19423458 - MIR SINE MIR -117 145 71 236 338 30 8 chr9 98439246 98439379 -19423248 - MER117 DNA MER1_type -1 196 61 262 244 211 32 chr9 98441530 98441653 -19420974 - MIR3 SINE MIR -39 169 25 23 33 0 0 chr9 98441672 98441702 -19420925 + AT_rich Low_complexity Low_complexity 1 30 0 342 267 231 15 chr9 98441796 98441991 -19420636 + MIR SINE MIR 3 239 -23 1555 169 56 30 chr9 98442486 98442788 -19419839 + AluJb SINE Alu 3 312 0 2740 10 0 0 chr9 98442901 98443197 -19419430 + AluYa5 SINE Alu 1 296 -15 457 173 0 39 chr9 98444223 98444327 -19418300 - L1PA3 LINE L1 0 6155 6056 220 345 33 2 chr9 98445248 98445353 -19417274 + MIR SINE MIR 54 161 -47 1001 290 112 44 chr9 98446287 98447034 -19415593 + L2 LINE L2 2524 3313 0 282 253 29 0 chr9 98447194 98447279 -19415348 - MIR SINE MIR -83 125 35 450 319 17 92 chr9 98448075 98448313 -19414314 - MIR SINE MIR -1 261 42 200 204 0 23 chr9 98448424 98448468 -19414159 + GA-rich Low_complexity Low_complexity 2 44 0 213 315 0 55 chr9 98449235 98449308 -19413319 + L3 LINE CR1 1043 1111 -466 258 274 177 24 chr9 98451187 98451311 -19411316 - L2 LINE L2 0 3313 3171 1724 214 41 57 chr9 98451866 98452379 -19410248 + MLT1D LTR MaLR 1 505 0 225 0 0 0 chr9 98452516 98452541 -19410086 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 197 421 16 0 chr9 98452639 98452760 -19409867 - L2 LINE L2 -866 2448 2326 29 0 0 0 chr9 98453561 98453590 -19409037 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr9 98453661 98453690 -19408937 + AT_rich Low_complexity Low_complexity 1 29 0 304 350 19 0 chr9 98454993 98455096 -19407531 + L2 LINE L2 3178 3282 -31 195 282 126 41 chr9 98455172 98455329 -19407298 + MIR SINE MIR 41 211 -47 794 225 100 20 chr9 98456451 98456700 -19405927 - L1MD3 LINE L1 0 7995 7727 446 259 0 0 chr9 98458447 98458532 -19404095 - MIR3 SINE MIR -39 169 85 196 333 26 26 chr9 98458665 98458743 -19403884 - MIR3 SINE MIR -117 91 14 207 227 57 68 chr9 98458822 98458910 -19403717 - MER5A DNA MER1_type -87 102 16 29 60 0 0 chr9 98458979 98459029 -19403598 + AT_rich Low_complexity Low_complexity 1 50 0 229 342 132 0 chr9 98459139 98459253 -19403374 - MIR3 SINE MIR -1 207 79 913 241 10 5 chr9 98459266 98459469 -19403158 - MLT1B LTR MaLR 0 390 187 255 79 0 0 chr9 98459474 98459512 -19403115 + (GA)n Simple_repeat Simple_repeat 1 38 0 411 227 97 91 chr9 98459512 98459688 -19402939 - MLT1B LTR MaLR -187 187 11 2421 97 3 0 chr9 98459869 98460179 -19402448 - AluSp SINE Alu 0 313 3 462 183 67 48 chr9 98460397 98460501 -19402126 - MER63 DNA MER1_type -330 732 1 268 278 33 44 chr9 98460658 98460748 -19401879 + MIR3 SINE MIR 105 193 -15 402 309 59 43 chr9 98460769 98461025 -19401602 + MIR SINE MIR 3 262 0 219 177 16 48 chr9 98461026 98461088 -19401539 + (CTA)n Simple_repeat Simple_repeat 1 60 0 195 306 78 82 chr9 98462101 98462333 -19400294 - L2 LINE L2 -94 3219 2989 1466 182 24 107 chr9 98463571 98464171 -19398456 + MER52A LTR ERV1 662 1349 -406 299 240 8 99 chr9 98464279 98464400 -19398227 + MER52A LTR ERV1 1211 1320 -435 257 262 214 35 chr9 98464644 98464789 -19397838 + L2 LINE L2 3143 3313 0 1989 159 54 14 chr9 98464888 98465259 -19397368 + LTR45B LTR ERV1 3 388 -101 265 333 21 0 chr9 98465965 98466058 -19396569 - MIR SINE MIR -107 155 61 1699 191 11 40 chr9 98466091 98466467 -19396160 - MLT1A1 LTR MaLR 0 365 1 1868 173 7 81 chr9 98466544 98466965 -19395662 - MLT1B LTR MaLR 0 390 1 1885 174 7 0 chr9 98467111 98467410 -19395217 + AluSx SINE Alu 1 301 -11 210 328 0 0 chr9 98467410 98467471 -19395156 + G-rich Low_complexity Low_complexity 6 66 0 290 276 38 48 chr9 98467872 98467977 -19394650 + MIR SINE MIR 67 170 -92 382 253 187 13 chr9 98467999 98468149 -19394478 + MER5A DNA MER1_type 13 188 -1 227 238 25 50 chr9 98468150 98468230 -19394397 + MIR SINE MIR 182 259 -3 * 719 235 6 24 chr9 98468224 98468390 -19394237 - L2 LINE L2 -1 3312 3150 21 36 0 0 chr9 98468390 98468418 -19394209 + AT_rich Low_complexity Low_complexity 1 28 0 762 241 64 0 chr9 98469314 98469501 -19393126 + MER105 DNA DNA 1 199 -5 357 268 177 6 chr9 98470125 98470289 -19392338 - MIR SINE MIR -10 252 61 1351 74 8 0 chr9 98470463 98470656 -19391971 + L1P2 LINE L1 5385 5586 -568 266 61 0 0 chr9 98471442 98471475 -19391152 + MIR SINE MIR 218 250 -12 318 369 81 27 chr9 98471740 98471962 -19390665 - MIR SINE MIR -1 261 28 26 0 0 0 chr9 98472741 98472767 -19389860 + AT_rich Low_complexity Low_complexity 1 26 0 455 255 9 0 chr9 98472796 98472902 -19389725 - MLT1G LTR MaLR 0 590 484 702 262 49 61 chr9 98472944 98473207 -19389420 + MIR SINE MIR 3 262 0 1618 157 52 0 chr9 98473245 98473513 -19389114 + AluJb SINE Alu 16 297 -15 642 260 175 44 chr9 98473514 98473789 -19388838 - MLT1G LTR MaLR -97 433 137 365 212 0 71 chr9 98473935 98474020 -19388607 + AluSq/x SINE Alu 55 133 -169 244 277 53 43 chr9 98475449 98475543 -19387084 + L2 LINE L2 3178 3272 0 186 43 0 0 chr9 98476322 98476345 -19386282 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1481 229 17 32 chr9 98476776 98477186 -19385441 + L1MD1 LINE L1 3953 4356 -1790 2183 253 46 55 chr9 98477343 98478326 -19384301 + L1MD1 LINE L1 4357 5330 -816 2081 188 53 52 chr9 98478327 98479079 -19383548 + L1MD1 LINE L1 5403 6242 0 334 352 63 25 chr9 98479340 98479655 -19382972 - MLT1K LTR MaLR -116 472 146 1869 118 11 4 chr9 98479832 98480103 -19382524 - AluSq SINE Alu -13 300 28 1738 249 71 37 chr9 98480696 98481242 -19381385 - MLT1E2 LTR MaLR 0 626 62 457 368 7 0 chr9 98481600 98481752 -19380875 + MIR3 SINE MIR 36 188 -20 429 297 54 0 chr9 98482018 98482166 -19380461 + L2 LINE L2 3143 3298 -15 1646 180 0 4 chr9 98482219 98482486 -19380141 - AluJb SINE Alu -46 266 1 21 0 0 0 chr9 98482516 98482537 -19380090 + AT_rich Low_complexity Low_complexity 1 21 0 182 283 9 71 chr9 98482696 98482809 -19379818 - L2 LINE L2 -61 3252 3147 377 131 61 30 chr9 98483001 98483100 -19379527 + L1MB1 LINE L1 6066 6167 -1 27 29 0 0 chr9 98483100 98483134 -19379493 + AT_rich Low_complexity Low_complexity 1 34 0 22 56 0 0 chr9 98483631 98483667 -19378960 + AT_rich Low_complexity Low_complexity 1 36 0 790 281 124 44 chr9 98483946 98484229 -19378398 - HAL1 LINE L1 -170 2337 2078 2091 119 7 3 chr9 98484229 98484531 -19378096 + AluSx SINE Alu 1 303 -9 790 281 124 44 chr9 98484531 98484860 -19377767 - HAL1 LINE L1 -429 2078 1676 2281 160 14 96 chr9 98484890 98485451 -19377176 + L1MA9 LINE L1 5798 6312 0 673 316 109 20 chr9 98485501 98486499 -19376128 - HAL1 LINE L1 -1076 1431 326 22 0 0 0 chr9 98486596 98486618 -19376009 + AT_rich Low_complexity Low_complexity 1 22 0 2124 169 41 14 chr9 98486619 98486974 -19375653 - L1PB4 LINE L1 -1 6155 5784 252 0 0 0 chr9 98486974 98487002 -19375625 + (TG)n Simple_repeat Simple_repeat 2 29 0 2124 169 41 14 chr9 98487002 98487084 -19375543 - L1PB4 LINE L1 -372 5784 5706 21 36 0 0 chr9 98487147 98487175 -19375452 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr9 98487519 98487542 -19375085 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr9 98487681 98487715 -19374912 + AT_rich Low_complexity Low_complexity 1 34 0 27 0 0 0 chr9 98487787 98487814 -19374813 + AT_rich Low_complexity Low_complexity 1 27 0 2050 133 0 0 chr9 98487990 98488275 -19374352 - AluSg SINE Alu -25 285 1 30 45 0 0 chr9 98489451 98489495 -19373132 + AT_rich Low_complexity Low_complexity 1 44 0 254 171 57 0 chr9 98489725 98489795 -19372832 + L1MA8 LINE L1 6213 6286 -5 698 261 107 0 chr9 98490436 98490651 -19371976 - MIR SINE MIR 0 262 25 205 171 0 0 chr9 98491675 98491710 -19370917 + (TATATG)n Simple_repeat Simple_repeat 6 40 0 230 174 22 0 chr9 98492002 98492048 -19370579 - MLT1K LTR MaLR -49 539 493 300 314 48 67 chr9 98492056 98492209 -19370418 - MIR SINE MIR -63 145 5 1328 298 54 51 chr9 98542783 98542937 -19319690 - L2 LINE L2 -817 2497 2345 5950 54 3 5 chr9 98542937 98543690 -19318937 + L1PA8 LINE L1 5419 6169 -3 1328 298 54 51 chr9 98543690 98544180 -19318447 - L2 LINE L2 -969 2345 1851 30 59 0 0 chr9 98545711 98545762 -19316865 + AT_rich Low_complexity Low_complexity 1 51 0 269 229 49 16 chr9 98546292 98546353 -19316274 - MIR SINE MIR -171 91 29 1749 150 3 31 chr9 98546722 98547016 -19315611 + AluSx SINE Alu 1 286 -26 350 269 74 19 chr9 98547695 98547803 -19314824 + MIR SINE MIR 32 145 -63 2083 120 3 7 chr9 98547939 98548238 -19314389 + AluSq SINE Alu 1 298 -15 189 94 0 0 chr9 98548519 98548551 -19314076 + (T)n Simple_repeat Simple_repeat 1 32 0 467 335 35 27 chr9 98549098 98549331 -19313296 - MIR SINE MIR -19 243 10 266 264 16 33 chr9 98549401 98549522 -19313105 + CT-rich Low_complexity Low_complexity 5 123 0 259 227 15 0 chr9 98550703 98550769 -19311858 + (TTCA)n Simple_repeat Simple_repeat 1 67 0 215 270 79 0 chr9 98550979 98551042 -19311585 + MIR SINE MIR 116 183 -79 789 314 46 8 chr9 98552049 98552422 -19310205 + L1MC4 LINE L1 7520 7906 -136 375 342 122 38 chr9 98552801 98553120 -19309507 + L3 LINE CR1 1228 1573 -4 279 310 81 0 chr9 98553745 98553832 -19308795 + MIR3 SINE MIR 83 176 -32 253 323 100 14 chr9 98553857 98554012 -19308615 + MIR SINE MIR 9 171 -80 1310 261 30 22 chr9 98554258 98554629 -19307998 + MLT1A2 LTR MaLR 1 374 0 1095 288 88 42 chr9 98555158 98555365 -19307262 + L2 LINE L2 2474 2670 -643 2221 96 4 0 chr9 98555365 98555676 -19306951 - AluSp SINE Alu 0 312 1 1095 288 88 42 chr9 98555676 98556249 -19306378 + L2 LINE L2 2670 3295 -18 317 419 22 12 chr9 98556906 98557314 -19305313 - L3 LINE CR1 -157 1420 1009 507 319 84 21 chr9 98557552 98557790 -19304837 + MIR SINE MIR 5 257 -5 1519 217 7 3 chr9 98557813 98558103 -19304524 + AluJo SINE Alu 1 291 -21 2859 250 83 32 chr9 98558105 98559267 -19303360 - L1ME2 LINE L1 -8 6090 4989 180 0 0 0 chr9 98559267 98559287 -19303340 + (TG)n Simple_repeat Simple_repeat 2 21 0 2859 250 83 32 chr9 98559287 98560423 -19302204 - L1ME2 LINE L1 -1109 4989 3674 869 258 113 17 chr9 98560527 98560988 -19301639 - L1ME2 LINE L1 -3432 2648 2144 5301 139 6 10 chr9 98561003 98562367 -19300260 - L1PA16 LINE L1 -9 6157 4783 2184 194 6 22 chr9 98562367 98562862 -19299765 + L1PA16 LINE L1 4313 4799 -1347 717 290 70 73 chr9 98562916 98564028 -19298599 - L1ME2 LINE L1 -4092 2169 1061 22 35 0 0 chr9 98564153 98564182 -19298445 + AT_rich Low_complexity Low_complexity 1 29 0 316 325 56 26 chr9 98564213 98564444 -19298183 - L1ME2 LINE L1 -5522 739 502 393 297 103 68 chr9 98564659 98565087 -19297540 - L1ME2 LINE L1 -5617 453 11 23 54 0 0 chr9 98565089 98565126 -19297501 + AT_rich Low_complexity Low_complexity 1 37 0 259 265 61 41 chr9 98565181 98565279 -19297348 - L2 LINE L2 -727 2587 2488 2323 310 77 72 chr9 98565279 98566858 -19295769 - L2 LINE L2 -934 2380 794 1044 316 85 50 chr9 98567976 98568533 -19294094 - HERV16 LTR ERVL -2536 2460 1877 690 262 4 76 chr9 98568533 98568758 -19293869 + MER63A DNA MER1_type 2 210 0 1044 316 85 50 chr9 98568758 98568836 -19293791 - HERV16 LTR ERVL -3119 1877 1803 298 346 42 28 chr9 98569303 98569586 -19293041 - HERV16 LTR ERVL -3752 1244 958 543 308 19 34 chr9 98570731 98570939 -19291688 - LTR16C LTR ERVL -197 294 90 1943 154 26 52 chr9 98571725 98572107 -19290520 + THE1C LTR MaLR 1 372 -3 8627 132 30 77 chr9 98572110 98573768 -19288859 + THE1C-int LTR MaLR 1 1580 0 2209 140 36 6 chr9 98573768 98574132 -19288495 + THE1C LTR MaLR 1 375 0 225 361 37 0 chr9 98574203 98574311 -19288316 + MIR3 SINE MIR 43 154 -54 4295 136 35 36 chr9 98574312 98575085 -19287542 - MER4E LTR ERV1 0 779 8 25 0 0 0 chr9 98575295 98575320 -19287307 + AT_rich Low_complexity Low_complexity 1 25 0 1992 152 0 19 chr9 98575344 98575654 -19286973 + AluSx SINE Alu 1 304 -8 200 299 60 45 chr9 98576157 98576224 -19286403 + L2 LINE L2 3193 3260 -12 333 271 21 29 chr9 98576466 98576475 -19286152 + (TA)n Simple_repeat Simple_repeat 2 10 -130 6458 132 38 57 chr9 98576475 98576792 -19285835 + Tigger3b DNA MER2_type 1 322 -2706 192 40 0 0 chr9 98576792 98576817 -19285810 + (CA)n Simple_repeat Simple_repeat 2 26 0 6458 132 38 57 chr9 98576817 98577056 -19285571 + Tigger3b DNA MER2_type 322 564 -2464 1714 162 0 64 chr9 98577056 98577384 -19285243 - AluSx SINE Alu -1 311 5 6458 132 38 57 chr9 98577384 98578079 -19284548 + Tigger3b DNA MER2_type 564 1230 -1 333 271 21 29 chr9 98578079 98578209 -19284418 + (TA)n Simple_repeat Simple_repeat 10 140 0 215 247 39 65 chr9 98578408 98578485 -19284142 - L2 LINE L2 -3 3310 3236 232 336 47 0 chr9 98578773 98578880 -19283747 + MIR3 SINE MIR 85 196 -12 256 308 8 42 chr9 98578897 98579017 -19283610 - LTR16C LTR ERVL -5 486 371 230 351 90 40 chr9 98579038 98579260 -19283367 - LTR16C LTR ERVL -91 400 168 484 243 11 77 chr9 98579680 98579861 -19282766 - MIR SINE MIR -10 252 84 243 0 0 0 chr9 98579889 98579916 -19282711 + (TA)n Simple_repeat Simple_repeat 2 28 0 1663 209 46 0 chr9 98580460 98580809 -19281818 - MLT1A1 LTR MaLR 0 365 1 445 369 23 5 chr9 98581360 98581574 -19281053 - L3 LINE CR1 -130 1447 1230 398 379 34 58 chr9 98581836 98581915 -19280712 + L2 LINE L2 2854 2933 -339 659 263 11 0 chr9 98581915 98582090 -19280537 - MER5B DNA MER1_type 0 178 2 398 379 34 58 chr9 98582090 98582424 -19280203 + L2 LINE L2 2933 3257 -15 488 313 51 11 chr9 98582749 98582925 -19279702 - MIR SINE MIR -14 248 66 244 270 150 10 chr9 98583358 98583458 -19279169 - MIR SINE MIR -74 134 21 450 250 56 50 chr9 98584529 98584709 -19277918 + MIR SINE MIR 82 262 0 1942 180 9 0 chr9 98584728 98585072 -19277555 + MER7A DNA MER2_type 1 345 -1 1179 197 7 60 chr9 98585339 98585608 -19277019 + AluJo SINE Alu 42 296 -16 263 257 65 0 chr9 98585757 98585841 -19276786 + MIR SINE MIR 53 147 -61 340 207 0 12 chr9 98585960 98586042 -19276585 + ORSL DNA AcHobo 37 117 -158 2205 87 0 40 chr9 98586136 98586434 -19276193 - AluSg SINE Alu -24 286 1 638 199 103 50 chr9 98586879 98587140 -19275487 + ORSL DNA AcHobo 1 275 0 209 133 67 0 chr9 98587500 98587545 -19275082 + A-rich Low_complexity Low_complexity 4 51 0 531 324 194 5 chr9 98587633 98587849 -19274778 - L3 LINE CR1 -967 610 354 197 335 10 92 chr9 98588179 98588385 -19274242 - L3 LINE CR1 -1297 280 92 325 313 69 35 chr9 98588450 98588649 -19273978 + MIR SINE MIR 16 217 -45 482 309 5 10 chr9 98589740 98589934 -19272693 + L1ME LINE L1 5578 5770 -351 2099 183 23 46 chr9 98590063 98590311 -19272316 + L1MA10 LINE L1 5863 6097 -237 2027 100 41 0 chr9 98590311 98590608 -19272019 + AluSc SINE Alu 1 308 0 2099 183 23 46 chr9 98590608 98590838 -19271789 + L1MA10 LINE L1 6097 6331 -3 1103 117 0 22 chr9 98591139 98591319 -19271308 - L1MA4A LINE L1 -6 6297 6122 1484 203 53 79 chr9 98592187 98592597 -19270030 - L1MD2 LINE L1 -4 6355 5957 2038 147 0 0 chr9 98592597 98592890 -19269737 + AluSx SINE Alu 3 295 -17 1484 203 53 79 chr9 98592890 98592946 -19269681 - L1MD2 LINE L1 -402 5957 5901 21 57 0 0 chr9 98593105 98593140 -19269487 + AT_rich Low_complexity Low_complexity 1 35 0 210 222 0 32 chr9 98593292 98593355 -19269272 + (TA)n Simple_repeat Simple_repeat 2 62 0 320 328 37 80 chr9 98593434 98593733 -19268894 - L1ME3A LINE L1 -242 5928 5643 1751 209 147 7 chr9 98593778 98594200 -19268427 - MLT1D LTR MaLR -3 502 22 293 266 46 21 chr9 98594670 98594776 -19267851 - L1ME3A LINE L1 -501 5620 5509 180 0 0 0 chr9 98595094 98595114 -19267513 + (TA)n Simple_repeat Simple_repeat 1 20 0 394 234 36 68 chr9 98595214 98595406 -19267221 - L1ME3A LINE L1 -1075 5071 4886 711 361 74 18 chr9 98595474 98595867 -19266760 - L2 LINE L2 -24 3289 2875 26 74 0 0 chr9 98596160 98596214 -19266413 + AT_rich Low_complexity Low_complexity 1 54 0 291 258 62 24 chr9 98596339 98596548 -19266079 - L1ME3A LINE L1 -1715 4431 4215 29 0 0 0 chr9 98596578 98596607 -19266020 + AT_rich Low_complexity Low_complexity 1 29 0 327 312 68 19 chr9 98596732 98596937 -19265690 - L1ME3A LINE L1 -2193 3953 3739 27 29 0 0 chr9 98597932 98597966 -19264661 + AT_rich Low_complexity Low_complexity 1 34 0 498 366 11 6 chr9 98598258 98598433 -19264194 - MIR SINE MIR -77 185 10 259 303 54 28 chr9 98598434 98598564 -19264063 - MIR SINE MIR -60 148 38 340 340 54 27 chr9 98599002 98599149 -19263478 - L2 LINE L2 -1 3271 3121 582 309 51 9 chr9 98599846 98600063 -19262564 + MIR SINE MIR 12 237 -25 193 330 31 31 chr9 98600220 98600317 -19262310 - MIR SINE MIR -93 169 73 258 282 80 75 chr9 98600826 98601039 -19261588 + L2 LINE L2 3098 3311 -2 247 273 10 63 chr9 98602076 98602205 -19260422 - MIR SINE MIR -81 127 2 21 0 0 0 chr9 98602316 98602337 -19260290 + AT_rich Low_complexity Low_complexity 1 21 0 1067 318 104 33 chr9 98602777 98603565 -19259062 + L2 LINE L2 2464 3313 0 266 383 66 6 chr9 98604010 98604193 -19258434 - MIR SINE MIR -67 195 2 381 349 113 5 chr9 98606491 98606703 -19255924 + MIR SINE MIR 7 241 -21 351 323 37 24 chr9 98607392 98607556 -19255071 - L1ME3A LINE L1 -219 5951 5786 235 356 57 36 chr9 98607616 98607810 -19254817 + L2 LINE L2 2601 2798 -516 6540 90 4 0 chr9 98609908 98611612 -19251015 - L1PA8 LINE L1 0 6172 4467 3420 126 4 4 chr9 98611612 98612146 -19250481 + L1PA8 LINE L1 3906 4439 -1707 2254 137 25 6 chr9 98612225 98612582 -19250045 - THE1B LTR MaLR 0 364 1 1492 156 19 19 chr9 98613562 98613819 -19248808 - AluJo SINE Alu -45 267 11 492 190 17 0 chr9 98614410 98614526 -19248101 - L1MA4 LINE L1 -2 6298 6181 455 333 40 48 chr9 98614538 98614766 -19247861 - MIR SINE MIR -17 245 20 262 314 44 7 chr9 98614829 98614966 -19247661 + MER117 DNA MER1_type 1 142 -55 438 288 0 55 chr9 98614995 98615141 -19247486 - MIR3 SINE MIR -48 160 23 286 303 8 50 chr9 98616095 98616214 -19246413 - MIR3 SINE MIR -80 128 15 2663 102 14 3 chr9 98616475 98616846 -19245781 - THE1C LTR MaLR 0 375 1 204 260 68 27 chr9 98617339 98617412 -19245215 + L2 LINE L2 3238 3313 0 194 242 45 15 chr9 98617452 98617518 -19245109 + MIR SINE MIR 164 231 -31 1736 306 127 44 chr9 98617754 98618931 -19243696 - L2 LINE L2 0 3313 2039 3971 72 2 4 chr9 98618931 98619443 -19243184 - MER9 LTR ERVK 0 511 1 1736 306 127 44 chr9 98619443 98619504 -19243123 - L2 LINE L2 -1274 2039 1984 2213 197 22 11 chr9 98619505 98619952 -19242675 - Tigger2 DNA MER2_type 0 2718 2267 387 203 0 0 chr9 98619936 98620005 -19242622 - Tigger2 DNA MER2_type -2649 69 1 * 289 286 11 0 chr9 98620017 98620108 -19242519 - L2 LINE L2 -1344 1970 1879 182 279 0 23 chr9 98620137 98620180 -19242447 + MIR3 SINE MIR 15 56 -152 198 71 0 0 chr9 98620402 98620430 -19242197 + (CA)n Simple_repeat Simple_repeat 2 29 0 1603 174 24 17 chr9 98621163 98621451 -19241176 + AluJb SINE Alu 3 292 -20 1136 156 109 28 chr9 98621595 98621806 -19240821 - MER1B DNA MER1_type 0 339 112 296 261 75 75 chr9 98622336 98622535 -19240092 + L2 LINE L2 3010 3208 -105 526 258 95 71 chr9 98622591 98622874 -19239753 + MER69 DNA AcHobo 67 356 -2170 5141 156 5 32 chr9 98623155 98624261 -19238366 - L1PA16 LINE L1 -7 6159 5086 1924 107 0 11 chr9 98624294 98624555 -19238072 - AluY SINE Alu -13 298 41 1305 229 90 39 chr9 98624576 98625219 -19237408 + MER69 DNA AcHobo 1848 2523 -3 1617 101 0 0 chr9 98626006 98626224 -19236403 + LTR46-int LTR ERV1 6768 6985 0 2097 132 35 95 chr9 98626224 98626656 -19235971 + LTR46 LTR ERV1 1 406 -54 23 33 0 0 chr9 98627732 98627762 -19234865 + AT_rich Low_complexity Low_complexity 1 30 0 379 351 60 7 chr9 98627818 98627969 -19234658 - MIR SINE MIR -99 163 5 345 364 0 0 chr9 98629633 98629765 -19232862 - MIR3 SINE MIR 0 208 77 425 236 11 28 chr9 98630258 98630440 -19232187 + CT-rich Low_complexity Low_complexity 2 180 0 289 306 8 73 chr9 98630582 98630706 -19231921 - L2 LINE L2 -181 3091 2976 327 104 0 0 chr9 98630725 98630773 -19231854 + (GA)n Simple_repeat Simple_repeat 1 48 0 960 253 35 65 chr9 98630844 98631211 -19231416 + MLT1A2 LTR MaLR 19 374 0 5649 239 36 70 chr9 98631213 98633003 -19229624 + MLT1A2-int LTR MaLR 2 1731 -4 375 146 0 0 chr9 98633007 98633062 -19229565 + MSTC LTR MaLR 1 55 -341 678 276 46 25 chr9 98633076 98633315 -19229312 + MSTC LTR MaLR 185 428 0 22 56 0 0 chr9 98633612 98633648 -19228979 + AT_rich Low_complexity Low_complexity 1 36 0 740 325 80 23 chr9 98634735 98635172 -19227455 + LTR16B LTR ERVL 1 462 -2 409 355 133 0 chr9 98635182 98635393 -19227234 - L2 LINE L2 -244 3069 2831 240 326 103 34 chr9 98636607 98636782 -19225845 + MIR SINE MIR 29 215 -47 404 200 10 0 chr9 98637608 98637708 -19224919 + GA-rich Low_complexity Low_complexity 2 102 0 233 250 67 0 chr9 98637764 98637824 -19224803 - MIR SINE MIR -3 259 196 221 333 13 19 chr9 98637835 98637994 -19224633 + (CATA)n Simple_repeat Simple_repeat 3 160 0 423 310 54 27 chr9 98637995 98638179 -19224448 - MIR SINE MIR -71 191 3 26 0 0 0 chr9 98639095 98639121 -19223506 + AT_rich Low_complexity Low_complexity 1 26 0 470 60 0 15 chr9 98639407 98639474 -19223153 + (TAGA)n Simple_repeat Simple_repeat 3 68 0 490 356 45 60 chr9 98640879 98641549 -19221078 + L2 LINE L2 2580 3241 -31 201 265 214 0 chr9 98642027 98642125 -19220502 + MIR SINE MIR 117 235 -27 216 315 46 19 chr9 98642183 98642291 -19220336 - L2 LINE L2 0 3313 3203 1933 105 0 0 chr9 98642544 98642792 -19219835 + AluSx SINE Alu 64 311 -1 2866 85 0 0 chr9 98643090 98643454 -19219173 + THE1B LTR MaLR 1 364 0 757 18 0 73 chr9 98643687 98643821 -19218806 - L1PA2 LINE L1 0 6155 6053 572 320 61 53 chr9 98643827 98644361 -19218266 - L2 LINE L2 -60 3253 2718 317 181 0 14 chr9 98644361 98644433 -19218194 - L1PA15 LINE L1 0 6165 6095 572 320 61 53 chr9 98644433 98644573 -19218054 - L2 LINE L2 -595 2718 2581 400 291 31 0 chr9 98644997 98645124 -19217503 + MIR SINE MIR 132 262 0 22 35 0 0 chr9 98645125 98645154 -19217473 + AT_rich Low_complexity Low_complexity 1 29 0 1737 130 43 23 chr9 98645214 98645513 -19217114 - AluSx SINE Alu -7 305 1 1907 118 0 31 chr9 98645715 98646002 -19216625 + AluSx SINE Alu 1 278 -34 344 148 0 0 chr9 98646002 98646056 -19216571 + (GGAA)n Simple_repeat Simple_repeat 4 57 0 924 137 23 0 chr9 98646057 98646232 -19216395 + GA-rich Low_complexity Low_complexity 2 180 0 399 41 0 0 chr9 98646233 98646282 -19216345 + (GAAAA)n Simple_repeat Simple_repeat 1 49 0 304 344 102 6 chr9 98646301 98646458 -19216169 + MIR SINE MIR 54 225 -37 201 261 0 161 chr9 98647211 98647341 -19215286 - L3 LINE CR1 -140 1437 1329 243 327 82 9 chr9 98647589 98647699 -19214928 - MIR SINE MIR -143 119 2 630 293 77 6 chr9 98647822 98648003 -19214624 - MIR SINE MIR -64 198 5 323 286 70 80 chr9 98648236 98648435 -19214192 - L3 LINE CR1 -757 820 624 841 43 9 9 chr9 98649014 98649129 -19213498 + (TTTC)n Simple_repeat Simple_repeat 2 116 0 1871 100 0 76 chr9 98649132 98649433 -19213194 - AluSg SINE Alu -32 278 1 255 241 54 36 chr9 98649433 98649545 -19213082 + MER103 DNA DNA 43 156 -10 397 239 101 0 chr9 98650659 98650768 -19211859 - MER63 DNA MER1_type -313 749 4 447 130 0 0 chr9 98650939 98651016 -19211611 + (TC)n Simple_repeat Simple_repeat 1 77 0 651 284 84 17 chr9 98651097 98651336 -19211291 + MIR SINE MIR 8 262 0 361 314 64 39 chr9 98651423 98651579 -19211048 + MIR SINE MIR 47 206 -56 238 291 42 36 chr9 98651672 98651837 -19210790 + L1ME LINE L1 5653 5818 -303 23 33 0 0 chr9 98651975 98652005 -19210622 + AT_rich Low_complexity Low_complexity 1 30 0 1968 103 3 35 chr9 98652034 98652316 -19210311 - AluSx SINE Alu -16 296 24 2767 3 0 0 chr9 98652488 98652787 -19209840 - AluYa5 SINE Alu -12 299 1 2440 80 3 3 chr9 98652902 98653243 -19209384 - AluSp SINE Alu 0 341 1 1989 122 45 7 chr9 98653601 98653889 -19208738 - AluSq SINE Alu -14 299 1 21 71 0 0 chr9 98655601 98655643 -19206984 + AT_rich Low_complexity Low_complexity 1 42 0 200 268 85 73 chr9 98655987 98656069 -19206558 - L2 LINE L2 -8 3264 3182 1388 213 51 9 chr9 98656489 98656822 -19205805 - MLT1A1 LTR MaLR 0 365 19 388 179 0 21 chr9 98657308 98657403 -19205224 + (TA)n Simple_repeat Simple_repeat 1 93 0 1341 179 7 64 chr9 98657405 98657567 -19205060 - AluJo SINE Alu -30 282 143 2281 95 0 26 chr9 98657567 98657873 -19204754 - AluSc SINE Alu -11 298 1 1341 179 7 64 chr9 98657873 98658006 -19204621 - AluJo SINE Alu -169 143 4 191 318 119 48 chr9 98658655 98658781 -19203846 + MIR SINE MIR 1 135 -127 446 314 19 13 chr9 98658830 98658989 -19203638 - MIR SINE MIR -26 236 77 320 324 111 42 chr9 98659130 98659346 -19203281 - MIR SINE MIR 0 262 32 416 202 20 0 chr9 98659386 98659485 -19203142 + CT-rich Low_complexity Low_complexity 3 103 0 319 303 97 28 chr9 98659604 98659749 -19202878 - MIR SINE MIR -87 175 21 737 131 23 29 chr9 98660403 98660578 -19202049 + CT-rich Low_complexity Low_complexity 4 177 0 485 311 79 70 chr9 98660676 98661230 -19201397 - MLT1K LTR MaLR -17 571 13 204 167 39 51 chr9 98662232 98662310 -19200317 + T-rich Low_complexity Low_complexity 5 81 0 8864 38 2 216 chr9 98662310 98664072 -19198555 - SVA Other Other 0 1386 1 360 43 0 0 chr9 98664081 98664127 -19198500 + (GGGAGA)n Simple_repeat Simple_repeat 2 47 0 237 196 0 0 chr9 98666507 98666558 -19196069 + (TATG)n Simple_repeat Simple_repeat 2 52 0 199 405 17 9 chr9 98666934 98667050 -19195577 - MIR3 SINE MIR -3 205 89 656 256 58 26 chr9 98667907 98668192 -19194435 + MLT1H LTR MaLR 15 274 -289 335 277 0 21 chr9 98668234 98668328 -19194299 + GA-rich Low_complexity Low_complexity 6 97 0 207 69 0 0 chr9 98668334 98668363 -19194264 + (GGGGA)n Simple_repeat Simple_repeat 5 33 0 2122 87 29 32 chr9 98668409 98668721 -19193906 + AluY SINE Alu 1 311 0 831 266 42 4 chr9 98669160 98669397 -19193230 + MIR SINE MIR 17 262 0 3452 159 12 51 chr9 98669483 98670242 -19192385 - L1MB3 LINE L1 -2 6181 5453 339 363 66 66 chr9 98670245 98670699 -19191928 - L2 LINE L2 0 3272 2819 1523 233 51 9 chr9 98670734 98671164 -19191463 + MLT1C LTR MaLR 20 467 0 213 175 25 0 chr9 98671367 98671407 -19191220 + (TAA)n Simple_repeat Simple_repeat 3 43 0 200 250 0 0 chr9 98671411 98671451 -19191176 - L2 LINE L2 -12 3260 3221 1058 162 0 0 chr9 98671546 98671713 -19190914 - FRAM SINE Alu -1 175 9 423 0 0 0 chr9 98672430 98672477 -19190150 + (TG)n Simple_repeat Simple_repeat 2 48 0 21 0 0 0 chr9 98672682 98672703 -19189924 + AT_rich Low_complexity Low_complexity 1 21 0 298 306 69 66 chr9 98672762 98673079 -19189548 - MLT1H LTR MaLR -102 447 130 3326 74 11 49 chr9 98673101 98673572 -19189055 + MLT2A2 LTR ERVL 1 453 0 200 326 65 11 chr9 98673697 98673789 -19188838 - MIR SINE MIR -112 150 54 589 290 36 49 chr9 98674068 98674292 -19188335 - MER58A DNA MER1_type -3 221 1 234 338 25 0 chr9 98674315 98674395 -19188232 + L2 LINE L2 3231 3312 -1 1088 252 37 28 chr9 98674686 98675039 -19187588 - MLT1D LTR MaLR -9 496 141 307 326 126 0 chr9 98675782 98675917 -19186710 + MIR SINE MIR 108 259 -3 272 296 14 0 chr9 98676306 98676377 -19186250 + (CATG)n Simple_repeat Simple_repeat 3 74 0 26 0 0 0 chr9 98678428 98678454 -19184173 + AT_rich Low_complexity Low_complexity 1 26 0 195 352 88 16 chr9 98679562 98679687 -19182940 - L2 LINE L2 -3 3269 3136 29 70 0 0 chr9 98680061 98680118 -19182509 + AT_rich Low_complexity Low_complexity 1 57 0 2228 137 11 110 chr9 98680218 98680260 -19182367 - MSTB LTR MaLR 0 426 381 2103 75 14 7 chr9 98680260 98680562 -19182065 + AluY SINE Alu 1 304 0 2228 137 11 110 chr9 98680562 98680991 -19181636 - MSTB LTR MaLR -45 381 1 401 323 6 42 chr9 98681025 98681192 -19181435 - MIR SINE MIR -28 234 74 264 263 34 32 chr9 98681193 98681351 -19181276 - MLT1A1 LTR MaLR 0 425 263 702 235 15 45 chr9 98681389 98681589 -19181038 - MLT1A1 LTR MaLR -169 196 3 22 0 0 0 chr9 98681597 98681619 -19181008 + AT_rich Low_complexity Low_complexity 1 22 0 2321 179 17 11 chr9 98681619 98682084 -19180543 - L1MC1 LINE L1 -9 6324 5857 1732 178 82 33 chr9 98682087 98682617 -19180010 - MLT2A2 LTR ERVL 0 554 1 487 125 0 12 chr9 98682621 98682701 -19179926 - L1MC1 LINE L1 -479 5854 5776 1754 220 60 14 chr9 98682714 98683233 -19179394 + L1MC/D LINE L1 4404 4946 -1200 434 248 9 0 chr9 98683267 98683372 -19179255 - MLT1A1 LTR MaLR -215 150 45 2630 174 49 1 chr9 98683389 98684158 -19178469 + L1MC/D LINE L1 4978 5781 -552 21 36 0 0 chr9 98684215 98684243 -19178384 + AT_rich Low_complexity Low_complexity 1 28 0 1694 134 0 4 chr9 98684273 98684527 -19178100 - AluSc SINE Alu -16 293 41 293 352 74 31 chr9 98684636 98684798 -19177829 - MIR SINE MIR -87 175 7 1510 203 10 29 chr9 98685536 98685846 -19176781 - AluJb SINE Alu -8 304 1 342 333 97 26 chr9 98686267 98686462 -19176165 - MIR SINE MIR -50 212 4 2147 123 0 22 chr9 98687430 98687747 -19174880 - AluY SINE Alu -1 310 1 416 325 48 21 chr9 98687923 98688111 -19174516 + MIR SINE MIR 43 235 -27 421 355 104 48 chr9 98688299 98688419 -19174208 + L2 LINE L2 2474 2586 -727 2178 120 0 3 chr9 98688419 98688710 -19173917 + AluSg SINE Alu 1 290 -20 421 355 104 48 chr9 98688710 98689378 -19173249 + L2 LINE L2 2586 3312 -1 292 330 25 25 chr9 98689643 98689761 -19172866 - L2 LINE L2 -5 3308 3191 856 255 0 9 chr9 98689763 98689975 -19172652 - MER20 DNA MER1_type 0 219 10 216 339 44 44 chr9 98690148 98690328 -19172299 - L2 LINE L2 -237 3035 2856 238 357 0 0 chr9 98690478 98690562 -19172065 - L2 LINE L2 -685 2629 2546 23 33 0 0 chr9 98691252 98691282 -19171345 + AT_rich Low_complexity Low_complexity 1 30 0 2280 91 3 3 chr9 98691666 98691974 -19170653 + AluSg SINE Alu 1 308 -2 257 257 14 0 chr9 98692203 98692273 -19170354 + GA-rich Low_complexity Low_complexity 3 73 0 992 104 6 28 chr9 98692484 98692666 -19169961 + (TTTC)n Simple_repeat Simple_repeat 2 179 0 372 299 140 0 chr9 98693653 98693817 -19168810 - MIR SINE MIR -10 252 66 1714 147 68 0 chr9 98694149 98694436 -19168191 - AluSx SINE Alu 0 305 1 25 31 0 0 chr9 98696059 98696091 -19166536 + AT_rich Low_complexity Low_complexity 1 32 0 256 323 100 14 chr9 98696625 98696780 -19165847 - MIR SINE MIR -80 128 9 276 310 81 0 chr9 98696805 98696892 -19165735 - MIR3 SINE MIR -32 176 83 364 342 122 38 chr9 98697516 98697835 -19164792 - L3 LINE CR1 -4 1573 1228 2833 260 84 3 chr9 98698214 98699232 -19163395 - L1MC4 LINE L1 -136 7906 6806 689 114 25 19 chr9 98699254 98699412 -19163215 + CT-rich Low_complexity Low_complexity 2 160 0 1708 171 6 34 chr9 98699443 98699764 -19162863 - AluJb SINE Alu 0 312 1 389 263 44 0 chr9 98699767 98699904 -19162723 - L1MC4 LINE L1 -1236 6806 6664 227 70 0 70 chr9 98700112 98700155 -19162472 + (GGAA)n Simple_repeat Simple_repeat 1 40 0 337 171 77 8 chr9 98700484 98700601 -19162026 + CT-rich Low_complexity Low_complexity 5 129 0 1083 183 0 72 chr9 98700628 98700863 -19161764 - AluJo SINE Alu -94 218 1 201 206 15 15 chr9 98702133 98702201 -19160426 + (TTAAA)n Simple_repeat Simple_repeat 4 71 0 21 36 0 0 chr9 98702211 98702239 -19160388 + AT_rich Low_complexity Low_complexity 1 28 0 195 390 17 17 chr9 98702239 98702357 -19160270 - MIR SINE MIR -68 140 23 217 0 61 0 chr9 98702713 98702746 -19159881 + (CTATA)n Simple_repeat Simple_repeat 4 38 0 202 350 10 50 chr9 98703637 98703737 -19158890 + L2 LINE L2 3154 3249 -23 519 278 43 19 chr9 98703800 98703962 -19158665 - MER5A DNA MER1_type -23 166 1 * 628 273 122 40 chr9 98703962 98704262 -19158365 - L3b LINE CR1 -104 1479 1155 202 258 54 40 chr9 98704509 98704639 -19157988 + MIR SINE MIR 60 192 -70 327 324 65 0 chr9 98705267 98705406 -19157221 - MIR SINE MIR -34 228 81 789 224 10 16 chr9 98705463 98705655 -19156972 - MLT1A1 LTR MaLR -1 364 174 2846 13 0 0 chr9 98705741 98706055 -19156572 + AluYb8 SINE Alu 1 314 -4 191 311 156 0 chr9 98706544 98706634 -19155993 - MIR SINE MIR -76 186 83 264 338 32 26 chr9 98707322 98707476 -19155151 - MIR SINE MIR -48 214 60 357 82 0 0 chr9 98707565 98707614 -19155013 + (TG)n Simple_repeat Simple_repeat 2 50 0 500 147 18 37 chr9 98707661 98707770 -19154857 - L1PA16 LINE L1 -1 6816 6710 13175 231 24 11 chr9 98707794 98712771 -19149856 - L1PA16 LINE L1 -188 6629 1583 1759 189 0 14 chr9 98712771 98713067 -19149560 - AluJb SINE Alu -20 292 1 13175 231 24 11 chr9 98713067 98713286 -19149341 - L1PA16 LINE L1 -5234 1583 1368 512 353 5 14 chr9 98713605 98713823 -19148804 - L1PA16 LINE L1 -6571 216 1 290 326 31 8 chr9 98713852 98713981 -19148646 + MIR SINE MIR 120 251 -11 187 229 0 0 chr9 98715900 98715935 -19146692 + L2 LINE L2 3024 3058 -255 825 310 24 4 chr9 98716347 98716602 -19146025 - MIR SINE MIR 0 262 3 527 290 16 42 chr9 98717009 98717202 -19145425 + MIR3 SINE MIR 6 193 -15 234 0 0 0 chr9 98717368 98717394 -19145233 + (A)n Simple_repeat Simple_repeat 1 26 0 304 240 125 0 chr9 98719006 98719102 -19143525 - LTR33A LTR ERVL -10 513 406 474 330 30 46 chr9 98719509 98719754 -19142873 - MIR SINE MIR -1 261 22 249 33 0 0 chr9 98720060 98720090 -19142537 + (GA)n Simple_repeat Simple_repeat 1 30 0 25 0 0 0 chr9 98720198 98720223 -19142404 + AT_rich Low_complexity Low_complexity 1 25 0 2142 179 59 7 chr9 98720359 98720766 -19141861 + MSTA LTR MaLR 1 428 0 8290 172 31 19 chr9 98720766 98722391 -19140236 + MSTA-int LTR MaLR 1 1646 -5 1928 202 67 0 chr9 98722397 98722798 -19139829 + MSTA LTR MaLR 1 428 0 262 247 53 74 chr9 98723825 98723996 -19138631 - MIR SINE MIR -62 146 21 347 167 0 0 chr9 98724402 98724462 -19138165 - AluJ/FLAM SINE Alu -233 69 10 482 300 59 42 chr9 98725537 98725774 -19136853 - MIR SINE MIR 0 262 22 232 299 9 19 chr9 98726441 98726548 -19136079 + GA-rich Low_complexity Low_complexity 3 108 0 797 278 29 12 chr9 98727122 98727367 -19135260 - MIR SINE MIR -1 261 13 182 415 30 15 chr9 98727429 98727564 -19135063 - L2 LINE L2 -7 3265 3129 971 216 64 70 chr9 98727689 98727775 -19134852 - MER58B DNA MER1_type -2094 326 241 1942 143 3 37 chr9 98727775 98728124 -19134503 - MER1B DNA MER1_type 0 337 1 971 216 64 70 chr9 98728124 98728365 -19134262 - MER58B DNA MER1_type -2179 241 1 408 323 61 30 chr9 98729211 98729539 -19133088 + LTR16C LTR ERVL 151 488 -3 235 265 87 59 chr9 98729935 98730061 -19132566 - L1ME4a LINE L1 -65 6056 5935 183 100 0 0 chr9 98730061 98730091 -19132536 + (TA)n Simple_repeat Simple_repeat 1 30 0 235 265 87 59 chr9 98730091 98730168 -19132459 - L1ME4a LINE L1 -186 5935 5844 2343 108 0 0 chr9 98730168 98730474 -19132153 - AluSg1 SINE Alu -3 306 1 235 265 87 59 chr9 98730474 98730488 -19132139 - L1ME4a LINE L1 -277 5844 5832 2111 109 10 10 chr9 98731129 98731441 -19131186 - AluSq SINE Alu -1 312 1 408 338 81 9 chr9 98731732 98731954 -19130673 + MIR SINE MIR 15 252 -10 404 316 31 61 chr9 98732310 98732506 -19130121 + L1 LINE L1 4781 4970 -1176 1109 285 30 66 chr9 98732788 98733349 -19129278 + L1M2a LINE L1 3 543 -6625 359 315 22 60 chr9 98733484 98733716 -19128911 + L1M2a LINE L1 1322 1544 -5624 1683 222 39 59 chr9 98733756 98734042 -19128585 + L1M2a LINE L1 1842 2132 -4966 2412 68 3 0 chr9 98734042 98734336 -19128291 + AluY SINE Alu 1 295 -16 1683 222 39 59 chr9 98734336 98734683 -19127944 + L1M2a LINE L1 2132 2471 -4627 773 234 82 3 chr9 98734679 98734982 -19127645 + L1M2a LINE L1 3871 4197 -2970 * 9008 179 224 1 chr9 98734982 98736969 -19125658 + L1M2 LINE L1 21 2450 -5115 4546 203 43 14 chr9 98736964 98738455 -19124172 + L1M2 LINE L1 5653 7199 -511 * 207 0 0 0 chr9 98738456 98738479 -19124148 + (TC)n Simple_repeat Simple_repeat 1 23 0 204 40 0 0 chr9 98738482 98738507 -19124120 + (TA)n Simple_repeat Simple_repeat 2 26 0 1743 275 72 38 chr9 98738513 98739477 -19123150 - L1M4 LINE L1 -1207 5357 4362 2161 256 116 48 chr9 98739480 98740249 -19122378 - L1MCa LINE L1 -3490 3074 2359 2219 118 0 0 chr9 98740249 98740538 -19122089 - AluSx SINE Alu -17 295 7 2161 256 116 48 chr9 98740538 98741569 -19121058 - L1MCa LINE L1 -4205 2359 1132 941 238 120 46 chr9 98741569 98741935 -19120692 - MSTD LTR MaLR 0 396 4 6307 230 62 30 chr9 98741946 98743620 -19119007 - MSTD-int LTR MaLR -5 1730 3 703 244 24 98 chr9 98743626 98743995 -19118632 - MLT1A1 LTR MaLR -5 360 19 1112 226 35 75 chr9 98744009 98744094 -19118533 - L1MCa LINE L1 -4910 1135 1048 2143 123 3 13 chr9 98744094 98744402 -19118225 - AluY SINE Alu -6 305 1 1112 226 35 75 chr9 98744402 98744798 -19117829 - L1MCa LINE L1 -4997 1048 673 623 283 101 61 chr9 98744810 98745217 -19117410 - L1MCa LINE L1 -5622 423 1 219 306 36 45 chr9 98746265 98746376 -19116251 + MIR SINE MIR 33 142 -66 252 358 137 42 chr9 98746439 98746629 -19115998 + L3 LINE CR1 918 1125 -452 257 324 0 0 chr9 98746740 98746808 -19115819 - MIR SINE MIR -19 243 176 234 156 0 0 chr9 98746827 98746872 -19115755 + (TG)n Simple_repeat Simple_repeat 2 46 0 434 305 115 25 chr9 98747156 98747356 -19115271 + L3 LINE CR1 1357 1574 -3 470 298 88 9 chr9 98747498 98747726 -19114901 - MIR SINE MIR -13 249 4 339 323 58 19 chr9 98747824 98747979 -19114648 - MIR SINE MIR -44 218 58 231 123 0 53 chr9 98748668 98748725 -19113902 + (TAAA)n Simple_repeat Simple_repeat 3 56 0 360 302 0 50 chr9 98749203 98749362 -19113265 - MER113 DNA MER1_type? -49 472 322 1030 165 49 79 chr9 98749380 98749646 -19112981 - AluJo SINE Alu -28 284 27 309 231 13 13 chr9 98749666 98749744 -19112883 - MER113 DNA MER1_type? -213 308 231 3089 219 16 11 chr9 98749752 98750397 -19112230 - MER82 DNA MER2_type 0 653 6 363 224 83 73 chr9 98750400 98750592 -19112035 - MER113 DNA MER1_type? -326 195 2 2047 135 0 0 chr9 98750745 98751041 -19111586 + AluSx SINE Alu 1 296 -16 295 294 22 0 chr9 98751649 98751741 -19110886 - MIR3 SINE MIR -6 202 109 370 221 229 0 chr9 98752008 98752130 -19110497 + LTR16A LTR ERVL 301 450 0 275 376 105 37 chr9 98752298 98752415 -19110212 + L2 LINE L2 2571 2679 -635 2457 65 3 0 chr9 98752415 98752725 -19109902 + AluY SINE Alu 1 311 0 275 376 105 37 chr9 98752725 98752782 -19109845 + L2 LINE L2 2679 2731 -583 2243 98 0 7 chr9 98752782 98753077 -19109550 + AluSx SINE Alu 5 297 -15 275 376 105 37 chr9 98753077 98753243 -19109384 + L2 LINE L2 2731 2943 -371 1505 309 74 62 chr9 98753243 98753836 -19108791 - MER4A LTR ERV1 0 600 1 275 376 105 37 chr9 98753836 98753873 -19108754 + L2 LINE L2 2943 2976 -338 506 288 38 6 chr9 98753935 98754095 -19108532 + MER91B DNA MER1_type 1 165 -25 301 308 28 62 chr9 98754158 98754369 -19108258 + L2 LINE L2 3109 3312 -1 353 262 35 35 chr9 98755256 98755401 -19107226 - LTR67 LTR ERVL -1 556 412 209 284 45 45 chr9 98755962 98756029 -19106598 - L2 LINE L2 -2 3311 3245 1045 183 114 81 chr9 98756061 98756394 -19106233 - MER2 DNA MER2_type 0 344 1 210 386 93 0 chr9 98756588 98756728 -19105899 + MIR SINE MIR 13 165 -97 225 94 0 0 chr9 98758336 98758368 -19104259 + (TTTA)n Simple_repeat Simple_repeat 4 35 0 1680 301 205 30 chr9 98758368 98759662 -19102965 - L2 LINE L2 -3 3310 1792 419 354 42 5 chr9 98759766 98759958 -19102669 + MLT1I LTR MaLR 63 261 -148 1687 175 0 0 chr9 98759998 98760261 -19102366 + AluJo SINE Alu 6 268 -44 482 276 0 0 chr9 98760370 98760486 -19102141 + AluJb SINE Alu 177 292 -20 328 231 13 13 chr9 98760506 98760584 -19102043 + MLT1I LTR MaLR 318 395 -14 308 139 23 23 chr9 98760985 98761071 -19101556 + (TTA)n Simple_repeat Simple_repeat 3 88 0 183 264 56 14 chr9 98761668 98761740 -19100887 + L2 LINE L2 2439 2513 -801 25 31 0 0 chr9 98761871 98761903 -19100724 + AT_rich Low_complexity Low_complexity 1 32 0 800 236 55 65 chr9 98762521 98762813 -19099814 - MLT1C LTR MaLR 0 467 179 269 297 22 11 chr9 98762885 98762976 -19099651 - L2 LINE L2 -1044 2270 2179 756 187 57 62 chr9 98762981 98763190 -19099437 - MLT1C LTR MaLR -258 209 2 2117 178 33 32 chr9 98763821 98764369 -19098258 + MLT2A2 LTR ERVL 3 554 0 1765 184 75 0 chr9 98764381 98764729 -19097898 - MLT1E1 LTR MaLR -1 653 280 1081 135 36 0 chr9 98764759 98764951 -19097676 - L1MA3 LINE L1 -9 6296 6098 491 54 54 0 chr9 98764959 98765033 -19097594 + L1MA3 LINE L1 6098 6175 -130 1168 243 11 8 chr9 98765034 98765297 -19097330 - MLT1E1 LTR MaLR -390 264 1 208 288 50 12 chr9 98766805 98766885 -19095742 + L3 LINE CR1 637 719 -858 192 366 54 27 chr9 98767656 98767768 -19094859 - L2 LINE L2 -8 3305 3191 572 354 124 41 chr9 98767849 98768798 -19093829 - L2 LINE L2 0 3272 2250 286 327 86 6 chr9 98770693 98770855 -19091772 - MIR3 SINE MIR -18 190 16 397 271 0 0 chr9 98771680 98771787 -19090840 - MER103 DNA DNA -48 118 12 340 283 11 11 chr9 98771889 98771981 -19090646 - MIR3 SINE MIR -53 155 64 202 314 0 14 chr9 98772086 98772156 -19090471 + MIR SINE MIR 184 252 -10 1804 136 0 14 chr9 98772694 98772974 -19089653 - AluSc SINE Alu -6 303 28 2265 105 7 3 chr9 98773699 98774004 -19088623 - AluSq SINE Alu -7 306 1 708 213 7 0 chr9 98774045 98774186 -19088441 - MER5A DNA MER1_type -44 145 4 553 313 145 10 chr9 98774255 98774565 -19088062 - LTR16C LTR ERVL -14 477 126 316 238 16 0 chr9 98774605 98774668 -19087959 + MER5A DNA MER1_type 40 103 -86 23 0 0 0 chr9 98774783 98774806 -19087821 + AT_rich Low_complexity Low_complexity 1 23 0 380 275 42 14 chr9 98775461 98775603 -19087024 + L2 LINE L2 2593 2738 -576 323 293 27 0 chr9 98775950 98776025 -19086602 + L2 LINE L2 3190 3266 -6 397 282 130 8 chr9 98776199 98776330 -19086297 + MIR3 SINE MIR 56 202 -6 1099 323 80 59 chr9 98776359 98777259 -19085368 + L3 LINE CR1 332 1250 -327 202 343 203 7 chr9 98777331 98777474 -19085153 + L2 LINE L2 3102 3272 0 180 333 71 24 chr9 98777589 98777673 -19084954 + L3 LINE CR1 1384 1471 -106 213 240 0 0 chr9 98778371 98778421 -19084206 + A-rich Low_complexity Low_complexity 1 50 0 459 299 22 7 chr9 98779064 98779201 -19083426 - MIR SINE MIR -104 158 20 276 263 59 72 chr9 98779280 98779432 -19083195 - MIR SINE MIR -93 169 20 190 265 72 24 chr9 98779503 98779586 -19083041 + MER5B DNA MER1_type 46 132 -46 846 165 32 19 chr9 98779607 98779765 -19082862 - AluSg/x SINE Alu -33 277 118 191 196 59 20 chr9 98780055 98780106 -19082521 + MER5B DNA MER1_type 80 132 -46 1737 162 30 0 chr9 98780127 98780398 -19082229 - AluSx SINE Alu -33 279 1 2434 104 14 0 chr9 98780476 98780832 -19081795 - L1PA14 LINE L1 -1 6160 5800 2368 100 3 0 chr9 98781445 98781754 -19080873 - AluSg SINE Alu 0 310 1 190 300 33 0 chr9 98782053 98782113 -19080514 - L3 LINE CR1 -8 1569 1508 333 287 54 8 chr9 98782212 98782341 -19080286 - MIR3 SINE MIR -65 143 9 572 248 225 28 chr9 98783091 98783309 -19079318 - MIR SINE MIR -1 261 1 931 123 0 0 chr9 98783400 98783522 -19079105 + AluSp/q SINE Alu 159 280 -33 220 345 42 25 chr9 98783719 98783838 -19078789 + MIR SINE MIR 53 173 -89 232 275 88 22 chr9 98784160 98784251 -19078376 - MIR SINE MIR -65 143 47 255 103 0 0 chr9 98784802 98784841 -19077786 + (TTTTA)n Simple_repeat Simple_repeat 1 39 0 551 308 109 32 chr9 98785403 98786015 -19076612 + L1MC/D LINE L1 2023 2643 -3572 291 242 104 35 chr9 98786257 98786517 -19076110 + L1MC/D LINE L1 2902 3179 -3036 210 118 0 0 chr9 98786541 98786575 -19076052 + (TG)n Simple_repeat Simple_repeat 2 35 0 182 118 29 0 chr9 98786576 98786610 -19076017 + GA-rich Low_complexity Low_complexity 2 36 0 22 35 0 0 chr9 98786653 98786682 -19075945 + AT_rich Low_complexity Low_complexity 1 29 0 355 324 93 32 chr9 98786765 98787324 -19075303 + L1MC/D LINE L1 3499 4091 -2124 535 259 46 15 chr9 98787583 98787845 -19074782 + L1MC/D LINE L1 5129 5398 -817 6567 151 23 41 chr9 98787937 98788695 -19073932 + L1PA16 LINE L1 1802 2524 -4325 1992 117 36 0 chr9 98788695 98788976 -19073651 - AluSx SINE Alu -19 293 3 6567 151 23 41 chr9 98788976 98789708 -19072919 + L1PA16 LINE L1 2524 3268 -3581 1113 251 33 17 chr9 98789707 98790126 -19072501 + L1 LINE L1 2909 3334 -2812 * 6293 195 25 11 chr9 98790122 98792524 -19070103 + L1PA16 LINE L1 4444 6869 0 336 344 6 7 chr9 98792541 98792717 -19069910 + L1MC/D LINE L1 5503 5678 -565 27 49 0 0 chr9 98793194 98793235 -19069392 + AT_rich Low_complexity Low_complexity 1 41 0 286 275 81 19 chr9 98793605 98793765 -19068862 + L1ME LINE L1 5530 5699 -422 4451 113 16 26 chr9 98793950 98794681 -19067946 - pTR5 LTR ERV1 0 2438 1715 7419 28 8 0 chr9 98794781 98795719 -19066908 + L1PA3 LINE L1 5211 6155 0 673 166 43 36 chr9 98795721 98795860 -19066767 - L1M1 LINE L1 -7407 158 19 4132 169 26 7 chr9 98795865 98796680 -19065947 - L1ME LINE L1 -1400 4815 3986 289 304 0 36 chr9 98796680 98796792 -19065835 + MIR SINE MIR 106 213 -49 24199 154 11 28 chr9 98796953 98801606 -19061021 - L1P3 LINE L1 -1086 5375 771 2530 181 37 6 chr9 98801611 98802098 -19060529 - L1P3 LINE L1 -5372 503 2 427 311 104 20 chr9 98802116 98802415 -19060212 - L1ME LINE L1 -2303 3912 3589 27 45 0 45 chr9 98802430 98802497 -19060130 + AT_rich Low_complexity Low_complexity 1 64 0 1473 281 125 6 chr9 98802560 98803475 -19059152 - L1ME LINE L1 -2906 3309 2286 607 186 60 36 chr9 98803585 98803752 -19058875 - L1MB3 LINE L1 -44 6139 5969 828 276 144 31 chr9 98803851 98804399 -19058228 - L1ME LINE L1 -4346 2050 1441 241 320 30 0 chr9 98804389 98804539 -19058088 - L1ME LINE L1 -5901 304 147 * 434 315 51 5 chr9 98804557 98804773 -19057854 - L1MEc LINE L1 -4573 1823 1598 1376 294 75 62 chr9 98804903 98805293 -19057334 - L1MEc LINE L1 -945 1631 1248 1092 229 35 41 chr9 98805293 98805659 -19056968 + MLT1A1 LTR MaLR 2 365 0 1376 294 75 62 chr9 98805659 98805987 -19056640 - L1MEc LINE L1 -1328 1248 926 2609 149 42 20 chr9 98805987 98806444 -19056183 + LTR24 LTR ERV1 1 467 0 1376 294 75 62 chr9 98806444 98806530 -19056097 - L1MEc LINE L1 -1650 926 843 3185 180 5 21 chr9 98806530 98807157 -19055470 - L1MC1 LINE L1 -1 6332 5716 1376 294 75 62 chr9 98807157 98807877 -19054750 - L1MEc LINE L1 -1733 843 27 254 341 39 8 chr9 98807984 98808113 -19054514 - L3 LINE CR1 -88 1489 1357 * 256 380 66 12 chr9 98808102 98808268 -19054359 - MIR SINE MIR -64 198 24 333 238 293 14 chr9 98808676 98808823 -19053804 + MER58A DNA MER1_type 37 224 0 2307 175 37 70 chr9 98809176 98809747 -19052880 - MER34B LTR ERV1 -3 562 11 21 71 0 0 chr9 98809950 98809992 -19052635 + AT_rich Low_complexity Low_complexity 1 42 0 300 20 122 0 chr9 98810315 98810364 -19052263 - L1PA13 LINE L1 -1 6162 6108 21 36 0 0 chr9 98810458 98810486 -19052141 + AT_rich Low_complexity Low_complexity 1 28 0 228 125 0 0 chr9 98810657 98810705 -19051922 - LTR66 LTR ERVL -169 441 394 2142 121 0 3 chr9 98810735 98811041 -19051586 - AluSg SINE Alu -5 305 1 1933 89 0 4 chr9 98812077 98812348 -19050279 + L1PB1 LINE L1 5880 6149 -2 214 320 107 8 chr9 98812422 98812544 -19050083 + MIR SINE MIR 102 235 -27 270 336 14 43 chr9 98812821 98812961 -19049666 + L3 LINE CR1 1141 1276 -301 341 316 53 0 chr9 98813145 98813278 -19049349 - MIR SINE MIR -67 195 56 2304 99 3 0 chr9 98813352 98813655 -19048972 + AluSg SINE Alu 1 304 -6 286 247 108 0 chr9 98813712 98813805 -19048822 + MIR SINE MIR 71 173 -89 1909 261 62 31 chr9 98814217 98815334 -19047293 + L1ME3 LINE L1 4832 5987 -175 1851 216 36 50 chr9 98815334 98815839 -19046788 + MLT1D LTR MaLR 1 498 -7 914 90 15 15 chr9 98815867 98816000 -19046627 + L1P3 LINE L1 5588 5720 -434 500 226 0 9 chr9 98816000 98816106 -19046521 + LTR16A LTR ERVL 344 448 -2 461 280 13 25 chr9 98816760 98816917 -19045710 + MER117 DNA MER1_type 1 155 -42 294 228 62 19 chr9 98817086 98817248 -19045379 + (TA)n Simple_repeat Simple_repeat 2 170 0 335 190 51 0 chr9 98817318 98817397 -19045230 - MER3 DNA MER1_type 0 209 127 276 354 82 48 chr9 98818039 98818245 -19044382 - MIR SINE MIR -49 213 1 2022 169 71 12 chr9 98818311 98818731 -19043896 - MER65A LTR ERV1 0 445 1 304 158 105 0 chr9 98819194 98819270 -19043357 + MIR SINE MIR 123 206 -56 502 311 162 0 chr9 98819306 98819528 -19043099 - MIR SINE MIR -1 261 4 417 330 68 17 chr9 98820003 98820179 -19042448 - MIR3 SINE MIR -6 202 18 200 138 0 0 chr9 98820800 98820829 -19041798 + MIR SINE MIR 87 115 -93 2505 105 5 24 chr9 98821193 98821564 -19041063 - THE1B LTR MaLR 0 364 1 444 301 45 13 chr9 98822283 98822439 -19040188 + MIR SINE MIR 46 206 -56 1596 119 27 20 chr9 98822541 98822834 -19039793 + L1MA7 LINE L1 5997 6291 0 24 53 0 0 chr9 98823050 98823088 -19039539 + AT_rich Low_complexity Low_complexity 1 38 0 416 182 13 0 chr9 98823661 98823738 -19038889 + ERVL LTR ERVL 5344 5421 -343 6801 195 41 15 chr9 98823768 98824352 -19038275 - ERVL LTR ERVL -356 5408 4841 1877 85 4 4 chr9 98824352 98824599 -19038028 + AluSc SINE Alu 42 288 -21 6801 195 41 15 chr9 98824599 98825387 -19037240 - ERVL LTR ERVL -923 4841 4000 3201 198 53 11 chr9 98825386 98826013 -19036614 - ERVL LTR ERVL -1951 3813 3161 * 317 157 0 0 chr9 98826025 98826076 -19036551 - ERVL LTR ERVL -484 5280 5230 3793 208 91 65 chr9 98826076 98827450 -19035177 - L1M4 LINE L1 -3817 2565 1153 251 296 31 10 chr9 98827558 98827656 -19034971 - MER103 DNA DNA -8 158 59 21 0 0 0 chr9 98827862 98827883 -19034744 + AT_rich Low_complexity Low_complexity 1 21 0 183 329 123 24 chr9 98828908 98829078 -19033549 - L3b LINE CR1 -7 1576 1390 188 315 56 37 chr9 98829206 98829314 -19033313 + L3 LINE CR1 1111 1220 -357 296 387 8 0 chr9 98829446 98829565 -19033062 + L3 LINE CR1 1453 1572 -5 417 266 66 39 chr9 98829569 98829828 -19032799 + L1ME4a LINE L1 5801 6066 -55 430 308 90 19 chr9 98829954 98830165 -19032462 + MIR SINE MIR 26 251 -11 270 95 0 0 chr9 98830579 98830621 -19032006 + (TG)n Simple_repeat Simple_repeat 1 42 0 401 400 35 49 chr9 98831436 98831803 -19030824 - L2 LINE L2 -1 3271 2910 356 339 78 11 chr9 98831979 98832159 -19030468 + MIR SINE MIR 52 243 -19 188 315 41 0 chr9 98832408 98832481 -19030146 - MIR SINE MIR -50 212 137 * 288 297 27 9 chr9 98832467 98832578 -19030049 + L2 LINE L2 2418 2530 -784 345 153 59 12 chr9 98832607 98832692 -19029935 - L1MB4 LINE L1 -6 6174 6086 1768 186 21 9 chr9 98832695 98833029 -19029598 - L1MA4 LINE L1 -280 6020 5683 372 319 242 3 chr9 98833041 98833263 -19029364 + L2 LINE L2 2517 2685 -629 279 0 0 0 chr9 98833263 98833294 -19029333 + (TG)n Simple_repeat Simple_repeat 2 32 0 222 37 0 0 chr9 98833293 98833320 -19029307 + (TA)n Simple_repeat Simple_repeat 1 27 0 * 372 319 242 3 chr9 98833294 98833432 -19029195 + L2 LINE L2 2685 2931 -383 5650 197 47 32 chr9 98833455 98835719 -19026908 + L1MC1 LINE L1 4036 6333 0 21 0 0 0 chr9 98835726 98835747 -19026880 + AT_rich Low_complexity Low_complexity 1 21 0 1028 219 63 0 chr9 98836134 98836435 -19026192 + MER114 LTR ERV 44 363 -285 722 22 0 0 chr9 98837798 98837888 -19024739 - AluYa5/8 SINE Alu -2 309 220 2186 123 3 0 chr9 98838305 98838613 -19024014 - AluSp SINE Alu -4 309 1 1228 210 23 16 chr9 98838645 98838902 -19023725 - MLT1A1 LTR MaLR 0 365 107 * 1287 169 51 4 chr9 98838890 98839126 -19023501 + MER21A LTR ERV1 679 925 -6 6436 145 7 49 chr9 98839196 98840175 -19022452 + MER21-int LTR ERV1 3085 4007 -2751 2406 64 0 0 chr9 98840175 98840472 -19022155 + AluY SINE Alu 1 297 -14 6436 145 7 49 chr9 98840472 98840677 -19021950 + MER21-int LTR ERV1 4007 4219 -2539 3227 129 76 19 chr9 98840677 98841256 -19021371 + LTR9 LTR ERV1 1 612 0 361 195 8 51 chr9 98841270 98841388 -19021239 + MER21-int LTR ERV1 1213 1325 -2866 1045 168 29 14 chr9 98841388 98841597 -19021030 - AluSg/x SINE Alu -15 297 86 11073 191 35 39 chr9 98841706 98842518 -19020109 + MER21-int LTR ERV1 1310 2123 -2068 1527 108 31 0 chr9 98842518 98842741 -19019886 - MER30 DNA MER1_type 0 230 1 11073 191 35 39 chr9 98842741 98844241 -19018386 + MER21-int LTR ERV1 2123 3615 -576 1392 177 4 11 chr9 98844469 98844734 -19017893 + L1PA10 LINE L1 5906 6168 0 665 297 62 47 chr9 98844744 98845212 -19017415 + L1M4 LINE L1 3846 4320 -1826 2147 110 25 0 chr9 98845216 98845543 -19017084 - L1PA13 LINE L1 -4 6159 5825 1278 177 73 5 chr9 98845543 98845885 -19016742 - L1PA13 LINE L1 -734 5434 5064 3336 170 49 2 chr9 98845899 98846198 -19016429 + L1P LINE L1 4379 4662 -1484 221 0 35 0 chr9 98846198 98846227 -19016400 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 3336 170 49 2 chr9 98846227 98846561 -19016066 + L1P LINE L1 4662 5042 -1104 2199 91 0 7 chr9 98846563 98846849 -19015778 - AluSc SINE Alu -10 299 16 297 284 77 14 chr9 98846855 98847077 -19015550 + L1M4 LINE L1 4327 4562 -1584 1385 255 99 40 chr9 98847086 98847768 -19014859 + L1ME2 LINE L1 4457 5199 -955 2668 122 24 0 chr9 98847768 98848187 -19014440 - L1PA13 LINE L1 -4 6159 5731 1385 255 99 40 chr9 98848187 98848334 -19014293 + L1ME2 LINE L1 5199 5336 -818 2033 262 61 16 chr9 98848370 98849072 -19013555 + L1ME2 LINE L1 5431 6164 0 226 232 56 42 chr9 98849334 98849476 -19013151 + L1MC5 LINE L1 7614 7757 -204 1316 217 50 11 chr9 98849633 98849914 -19012713 + AluJb SINE Alu 1 292 -10 234 250 0 0 chr9 98850474 98850542 -19012085 + (TGAA)n Simple_repeat Simple_repeat 3 70 0 216 382 73 8 chr9 98851403 98851526 -19011101 + MIR SINE MIR 2 132 -130 1488 189 30 9 chr9 98851601 98851934 -19010693 - L1PB4 LINE L1 -10 6146 5807 1928 137 48 59 chr9 98852136 98852494 -19010133 - THE1B LTR MaLR -1 363 10 266 250 40 70 chr9 98852498 98852598 -19010029 + MIR SINE MIR 129 225 -37 249 287 43 21 chr9 98852987 98853081 -19009546 - MIR SINE MIR -110 152 57 1168 78 30 0 chr9 98853941 98854108 -19008519 - L1PA13 LINE L1 -3 6160 5989 2211 97 12 9 chr9 98854115 98854444 -19008183 + L1PA13 LINE L1 5616 5945 -218 387 271 23 8 chr9 98855000 98855129 -19007498 - L1ME4a LINE L1 -261 5860 5730 23 33 0 0 chr9 98855205 98855235 -19007392 + AT_rich Low_complexity Low_complexity 1 30 0 810 322 77 54 chr9 98855262 98855839 -19006788 + L2 LINE L2 2497 3090 -223 2092 108 10 3 chr9 98855992 98856287 -19006340 - AluSg SINE Alu -13 297 1 1218 108 46 0 chr9 98857408 98857602 -19005025 - L1MA6 LINE L1 -2 6298 6096 863 240 102 29 chr9 98857602 98857647 -19004980 - Charlie4a DNA MER1_type -1476 485 445 489 266 112 94 chr9 98857647 98858192 -19004435 + MLT1H1 LTR MaLR 1 555 0 863 240 102 29 chr9 98858192 98858596 -19004031 - Charlie4a DNA MER1_type -1516 445 3 353 242 15 106 chr9 98858971 98859008 -19003619 + MER5A DNA MER1_type 21 60 -129 2506 59 0 0 chr9 98859008 98859312 -19003315 - AluYa5 SINE Alu -7 304 1 353 242 15 106 chr9 98859312 98859406 -19003221 + MER5A DNA MER1_type 60 140 -49 418 229 57 9 chr9 98860633 98860738 -19001889 - MIR3 SINE MIR -18 190 81 268 226 49 39 chr9 98860851 98860953 -19001674 - MER103 DNA DNA -61 105 3 2402 77 3 3 chr9 98861169 98861480 -19001147 - AluY SINE Alu 0 311 1 374 331 22 34 chr9 98861710 98861888 -19000739 - MIR3 SINE MIR -13 195 20 195 283 0 0 chr9 98862000 98862099 -19000528 + CT-rich Low_complexity Low_complexity 3 101 0 2264 176 28 16 chr9 98862166 98862593 -19000034 - MSTB1 LTR MaLR 0 432 1 221 372 216 0 chr9 98862785 98862933 -18999694 - MER5A DNA MER1_type 0 189 10 202 357 56 24 chr9 98863115 98863241 -18999386 - MIR SINE MIR -55 153 24 447 19 0 0 chr9 98863264 98863316 -18999311 + (CA)n Simple_repeat Simple_repeat 2 53 0 24 53 0 0 chr9 98863543 98863581 -18999046 + AT_rich Low_complexity Low_complexity 1 38 0 1184 282 56 32 chr9 98864687 98865223 -18997404 + MLT1H LTR MaLR 1 549 0 422 400 25 8 chr9 98867142 98867387 -18995240 - MIR SINE MIR 0 262 14 207 313 69 53 chr9 98867458 98867589 -18995038 - L2 LINE L2 -4 3309 3177 320 330 11 0 chr9 98867743 98867837 -18994790 + L2 LINE L2 3177 3271 -1 276 302 56 40 chr9 98868066 98868192 -18994435 - L2 LINE L2 -556 2758 2631 216 0 0 0 chr9 98869548 98869572 -18993055 + (T)n Simple_repeat Simple_repeat 1 24 0 183 195 24 0 chr9 98869806 98869847 -18992780 - L2 LINE L2 0 3313 3272 1159 291 71 58 chr9 98869967 98870504 -18992123 + MLT1H LTR MaLR 1 544 -5 334 340 38 32 chr9 98870695 98870880 -18991747 - MLT1K LTR MaLR -103 485 300 327 135 0 0 chr9 98871008 98871060 -18991567 - MADE1 DNA Mariner -27 53 2 236 109 0 43 chr9 98871778 98871824 -18990803 + (TCCA)n Simple_repeat Simple_repeat 3 46 0 310 331 63 0 chr9 98871826 98871953 -18990674 - L2 LINE L2 -2 3270 3136 295 299 103 0 chr9 98872130 98872237 -18990390 - MIR SINE MIR -54 208 91 204 40 0 0 chr9 98872748 98872773 -18989854 + (CA)n Simple_repeat Simple_repeat 2 26 0 218 329 12 24 chr9 98873316 98873401 -18989226 + L2 LINE L2 3209 3292 -21 1515 214 30 25 chr9 98873773 98873976 -18988651 + L1M3 LINE L1 5434 5641 -542 1547 183 73 14 chr9 98873976 98874320 -18988307 + MLT1A1 LTR MaLR 2 365 0 1515 214 30 25 chr9 98874320 98874480 -18988147 + L1M3 LINE L1 5641 5799 -384 1804 118 0 87 chr9 98874480 98874885 -18987742 + Charlie3 DNA MER1_type 1 2712 0 271 187 40 0 chr9 98874885 98874960 -18987667 + L1M3 LINE L1 5791 5868 -312 2248 169 28 15 chr9 98875535 98875932 -18986695 - MER21A LTR ERV1 -7 924 523 454 177 0 13 chr9 98875932 98876011 -18986616 + THE1C LTR MaLR 1 78 -350 729 190 84 129 chr9 98876153 98876599 -18986028 - LTR28 LTR ERV1 -10 970 1 1470 179 10 30 chr9 98876599 98876900 -18985727 + THE1C LTR MaLR 81 375 0 1181 218 24 15 chr9 98876901 98877293 -18985334 - MER21A LTR ERV1 -433 430 1 1320 194 54 25 chr9 98877293 98877571 -18985056 - MER21A-int LTR ERV1 0 4191 3906 248 379 10 0 chr9 98877674 98877777 -18984850 - MIR SINE MIR -63 145 42 218 247 101 34 chr9 98877840 98877929 -18984698 - L2 LINE L2 0 3272 3178 212 247 376 0 chr9 98878693 98878786 -18983841 - MIR SINE MIR -54 208 81 204 407 44 18 chr9 98879052 98879165 -18983462 - L2 LINE L2 -8 3264 3149 6544 50 5 0 chr9 98879253 98880069 -18982558 + L1PA7 LINE L1 5334 6153 -1 204 111 0 0 chr9 98880255 98880291 -18982336 + (T)n Simple_repeat Simple_repeat 1 36 0 2484 59 0 0 chr9 98880487 98880794 -18981833 + AluY SINE Alu 1 307 -4 216 129 79 79 chr9 98881782 98881921 -18980706 + (TTTAA)n Simple_repeat Simple_repeat 3 141 0 1468 154 26 0 chr9 98881924 98882196 -18980431 - L1MA5A LINE L1 -4 6293 6015 360 331 47 8 chr9 98882413 98882540 -18980087 - L2 LINE L2 0 3313 3182 29 0 0 0 chr9 98883115 98883144 -18979483 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr9 98883410 98883432 -18979195 + AT_rich Low_complexity Low_complexity 1 22 0 2160 172 23 30 chr9 98883682 98884119 -18978508 - Tigger2a DNA MER2_type 0 434 1 1822 186 28 14 chr9 98884163 98884523 -18978104 - MLT1A1 LTR MaLR 0 365 1 2382 56 3 0 chr9 98885488 98885774 -18976853 - AluY SINE Alu -24 287 1 213 320 85 50 chr9 98887598 98887798 -18974829 + L2 LINE L2 2581 2787 -527 710 235 55 25 chr9 98888198 98888436 -18974191 + L1MA9 LINE L1 6029 6273 -39 1470 198 18 65 chr9 98888522 98888861 -18973766 + MLT1A1 LTR MaLR 1 323 -42 26 30 0 0 chr9 98888935 98888968 -18973659 + AT_rich Low_complexity Low_complexity 1 33 0 337 285 56 51 chr9 98889056 98889270 -18973357 + L2 LINE L2 3083 3297 -16 2164 116 7 0 chr9 98889692 98889993 -18972634 + AluSx SINE Alu 5 307 -5 462 333 14 0 chr9 98890503 98890644 -18971983 + MIR SINE MIR 47 189 -73 458 322 0 8 chr9 98890807 98890928 -18971699 + L2 LINE L2 3194 3313 0 616 343 34 8 chr9 98891035 98891274 -18971353 + MIR SINE MIR 18 262 0 438 239 63 28 chr9 98891360 98891502 -18971125 - MIR SINE MIR -57 205 59 267 350 108 10 chr9 98891756 98891950 -18970677 - MIR SINE MIR -11 251 39 216 336 47 28 chr9 98892879 98892986 -18969641 - L2 LINE L2 0 3272 3164 266 288 137 35 chr9 98893076 98893302 -18969325 - MIR SINE MIR -6 256 8 335 323 31 8 chr9 98893329 98893456 -18969171 + MIR SINE MIR 19 148 -114 246 128 0 0 chr9 98894502 98894541 -18968086 + (GA)n Simple_repeat Simple_repeat 1 39 0 402 283 33 0 chr9 98894910 98895030 -18967597 + MER103 DNA DNA 13 136 -30 361 303 0 9 chr9 98895233 98895342 -18967285 - MLT1J2 LTR MaLR -307 143 36 387 326 30 64 chr9 98895742 98895891 -18966736 + MIR SINE MIR 6 144 -118 2279 102 0 3 chr9 98895891 98896195 -18966432 - AluSg SINE Alu -7 303 1 387 326 30 64 chr9 98896195 98896309 -18966318 + MIR SINE MIR 144 260 -2 417 297 0 17 chr9 98896332 98896450 -18966177 + MIR SINE MIR 32 147 -115 447 259 148 11 chr9 98896693 98896882 -18965745 - L3b LINE CR1 -237 1346 1132 315 0 0 0 chr9 98896991 98897026 -18965601 + (TA)n Simple_repeat Simple_repeat 2 36 0 324 333 19 9 chr9 98897954 98898062 -18964565 + MIR SINE MIR 4 112 -150 3270 150 19 16 chr9 98898067 98898143 -18964484 - L1MA4 LINE L1 -19 6281 6207 2124 134 134 8 chr9 98898143 98898523 -18964104 + MSTA LTR MaLR 1 428 0 3270 150 19 16 chr9 98898523 98899080 -18963547 - L1MA4 LINE L1 -93 6207 5646 416 53 0 0 chr9 98899080 98899137 -18963490 - L1 LINE L1 -1352 4794 4738 13093 163 28 39 chr9 98899156 98900608 -18962019 - L1MA2 LINE L1 0 7723 6257 1981 142 7 3 chr9 98900608 98900918 -18961709 + AluSx SINE Alu 1 311 -1 13093 163 28 39 chr9 98900918 98901207 -18961420 - L1MA2 LINE L1 -1466 6257 5966 240 35 0 0 chr9 98901207 98901236 -18961391 + (TTG)n Simple_repeat Simple_repeat 2 30 0 13093 163 28 39 chr9 98901236 98904814 -18957813 - L1MA2 LINE L1 -1757 5966 2466 12370 179 32 47 chr9 98904940 98907564 -18955063 - L1M1 LINE L1 -4835 2730 146 1727 20 0 0 chr9 98907562 98907762 -18954865 - L1P LINE L1 -1445 4701 4502 * 1664 48 0 0 chr9 98907763 98907973 -18954654 + L1P LINE L1 4698 4907 -1239 298 356 6 25 chr9 98908265 98908425 -18954202 + MER117 DNA MER1_type 5 161 -36 308 287 61 9 chr9 98908523 98908638 -18953989 - MIR SINE MIR -93 169 49 387 349 65 52 chr9 98908922 98909323 -18953304 + MLT1J2 LTR MaLR 32 437 -13 804 261 82 8 chr9 98909530 98909594 -18953033 - MLT1H1 LTR MaLR 0 555 497 1168 28 17 39 chr9 98909594 98909773 -18952854 + (CTATT)n Simple_repeat Simple_repeat 4 178 0 666 47 0 0 chr9 98909776 98909862 -18952765 + (CTACT)n Simple_repeat Simple_repeat 2 87 0 804 261 82 8 chr9 98909862 98910038 -18952589 - MLT1H1 LTR MaLR -59 496 293 297 292 76 53 chr9 98910077 98910248 -18952379 - MLT1H1 LTR MaLR -372 183 9 240 356 168 20 chr9 98911352 98911602 -18951025 - L3 LINE CR1 -15 1562 1276 1696 196 20 40 chr9 98912459 98912903 -18949724 + MER63B DNA MER1_type 1 435 -1 3607 176 8 12 chr9 98913156 98913800 -18948827 + MER50 LTR ERV1 1 641 -93 220 305 12 0 chr9 98964008 98964090 -18898537 + (CA)n Simple_repeat Simple_repeat 1 83 0 453 318 47 28 chr9 98964117 98964328 -18898299 - MIR SINE MIR -30 232 18 201 262 82 0 chr9 98964929 98964990 -18897637 - L3 LINE CR1 -179 1398 1333 186 318 27 55 chr9 98965220 98965330 -18897297 + MIR3 SINE MIR 77 183 -25 275 258 138 42 chr9 98965804 98965971 -18896656 + L2 LINE L2 2827 3009 -263 233 290 191 33 chr9 98965988 98966171 -18896456 + MIR SINE MIR 23 234 -28 615 203 0 85 chr9 98966293 98966414 -18896213 - MER58B DNA MER1_type -2079 341 234 2121 0 0 0 chr9 98966414 98966640 -18895987 + AluYa5 SINE Alu 86 311 0 615 203 0 85 chr9 98966640 98966671 -18895956 - MER58B DNA MER1_type -2186 234 202 1138 191 19 0 chr9 98966738 98966953 -18895674 + MER58A DNA MER1_type 2 220 -4 203 245 19 0 chr9 98967218 98967271 -18895356 - MIR SINE MIR -72 136 83 2477 135 6 0 chr9 98967616 98967978 -18894649 - THE1B LTR MaLR 0 364 1 350 364 62 35 chr9 98968507 98968878 -18893749 - L3 LINE CR1 -56 1521 1141 297 259 46 46 chr9 98969238 98969346 -18893281 - MIR SINE MIR -38 224 117 209 273 0 36 chr9 98969520 98969575 -18893052 - L3 LINE CR1 -5 1572 1520 2348 91 0 0 chr9 98970141 98970437 -18892190 - AluSx SINE Alu -14 298 3 286 270 143 8 chr9 98970452 98970578 -18892049 + MIR SINE MIR 65 207 -55 1564 180 35 69 chr9 98970646 98971023 -18891604 - MLT1A1 LTR MaLR 0 365 2 425 288 18 43 chr9 98971341 98971504 -18891123 + L2 LINE L2 3150 3308 -5 188 192 0 19 chr9 98972486 98972538 -18890089 + MIR SINE MIR 104 153 -63 280 284 142 28 chr9 98972760 98972901 -18889726 + MIR SINE MIR 41 197 -65 273 383 31 8 chr9 98973776 98973904 -18888723 + MIR SINE MIR 22 152 -56 413 289 31 16 chr9 98974056 98974184 -18888443 - MER5B DNA MER1_type -46 132 3 931 212 95 12 chr9 98974431 98974672 -18887955 - MIR SINE MIR -1 261 1 362 340 31 19 chr9 98974997 98975156 -18887471 + L3 LINE CR1 1333 1493 -84 819 291 99 42 chr9 98975201 98976176 -18886451 + L1MEc LINE L1 757 1787 -4609 2201 127 31 0 chr9 98976177 98976756 -18885871 - L1P4 LINE L1 -572 5591 5002 1816 92 0 0 chr9 98976757 98977008 -18885619 + L1PA13 LINE L1 5912 6162 -1 624 269 134 38 chr9 98977010 98977572 -18885055 + L1MEc LINE L1 1782 2415 -3981 2229 103 0 13 chr9 98977572 98977873 -18884754 + AluSg SINE Alu 1 297 -13 624 269 134 38 chr9 98977873 98977950 -18884677 + L1MEc LINE L1 2415 2483 -3913 327 248 19 0 chr9 98977957 98978062 -18884565 - L1MC4 LINE L1 -3 8039 7933 291 93 0 0 chr9 98978138 98978181 -18884446 + (CA)n Simple_repeat Simple_repeat 2 44 0 2595 239 26 7 chr9 98978193 98978910 -18883717 - L1MC4 LINE L1 -142 7900 7170 901 280 71 7 chr9 98978930 98979380 -18883247 + L1MEc LINE L1 2446 2924 -3291 1735 156 0 33 chr9 98979956 98980257 -18882370 + AluSx SINE Alu 2 292 -20 29 0 0 0 chr9 98980367 98980396 -18882231 + AT_rich Low_complexity Low_complexity 1 29 0 203 146 24 0 chr9 98980468 98980509 -18882118 + (TA)n Simple_repeat Simple_repeat 1 42 0 227 311 64 77 chr9 98982521 98982916 -18879711 - L2 LINE L2 -227 3045 2639 211 235 20 0 chr9 98982942 98982993 -18879634 + MIR3 SINE MIR 109 160 -48 471 319 104 0 chr9 98982993 98983175 -18879452 + MER58A DNA MER1_type 1 201 -23 190 282 0 0 chr9 98983395 98983434 -18879193 + L3 LINE CR1 1524 1562 -15 279 270 126 63 chr9 98983442 98983553 -18879074 - L2 LINE L2 -1 3271 3154 327 25 0 0 chr9 98983601 98983641 -18878986 + (CA)n Simple_repeat Simple_repeat 2 41 0 1861 107 65 121 chr9 98983651 98983875 -18878752 - MLT1B LTR MaLR 0 390 198 1890 107 0 19 chr9 98983875 98984137 -18878490 - AluSx SINE Alu -2 310 54 1861 107 65 121 chr9 98984137 98984325 -18878302 - MLT1B LTR MaLR -192 198 1 203 200 46 15 chr9 98984437 98984502 -18878125 - L2 LINE L2 -99 3214 3148 601 345 98 15 chr9 98984989 98985536 -18877091 + L2 LINE L2 2705 3309 -4 273 277 153 7 chr9 98985718 98985855 -18876772 - L3 LINE CR1 -411 1166 1010 417 250 23 38 chr9 98986358 98986490 -18876137 + MIR3 SINE MIR 14 143 -65 294 283 71 23 chr9 98987089 98987229 -18875398 + MIR SINE MIR 36 188 -63 378 0 0 0 chr9 98987713 98987755 -18874872 + (CA)n Simple_repeat Simple_repeat 2 43 0 568 315 118 22 chr9 98987986 98988434 -18874193 + L2 LINE L2 2475 2965 -349 649 289 123 13 chr9 98989894 98990129 -18872498 + MIR SINE MIR 2 262 0 393 300 118 21 chr9 98990600 98990837 -18871790 + MIR SINE MIR 3 262 0 205 397 9 43 chr9 98991232 98991348 -18871279 + L2 LINE L2 2983 3094 -178 240 250 108 63 chr9 98991828 98991960 -18870667 + MIR SINE MIR 44 185 -62 469 264 14 0 chr9 98992043 98992183 -18870444 + MER103 DNA DNA 6 147 -19 531 43 0 0 chr9 98992311 98992381 -18870246 + (GA)n Simple_repeat Simple_repeat 1 70 0 2210 51 0 11 chr9 98992627 98992901 -18869726 + AluY SINE Alu 1 271 -40 23 78 0 0 chr9 98992901 98992952 -18869675 + AT_rich Low_complexity Low_complexity 1 51 0 397 132 0 0 chr9 98994452 98994520 -18868107 - MLT1A2 LTR MaLR -13 361 294 486 108 0 0 chr9 98994542 98994616 -18868011 - L1MA7 LINE L1 -155 6136 6063 1103 238 25 31 chr9 98994739 98995025 -18867602 - MLT1A2 LTR MaLR -90 284 1 290 201 164 30 chr9 98995032 98995139 -18867488 - MIR SINE MIR -62 146 28 37 0 0 0 chr9 98995157 98995194 -18867433 + AT_rich Low_complexity Low_complexity 1 37 0 437 228 87 8 chr9 98995505 98995632 -18866995 - MIR SINE MIR -122 140 4 212 296 25 37 chr9 98996419 98996473 -18866154 + MIR SINE MIR 81 135 -127 1240 131 32 0 chr9 98996473 98996694 -18865933 - L1MA7 LINE L1 -1 6290 6063 212 296 25 37 chr9 98996694 98996720 -18865907 + MIR SINE MIR 135 160 -102 1425 213 20 17 chr9 98997392 98997740 -18864887 + MLT1A1 LTR MaLR 6 354 -11 23 68 0 0 chr9 98997856 98997900 -18864727 + AT_rich Low_complexity Low_complexity 1 44 0 1689 244 35 75 chr9 98997915 98998564 -18864063 + L1ME2 LINE L1 5533 6155 -9 8142 33 0 16 chr9 98998888 99000670 -18861957 - L1PA4 LINE L1 -3 6152 4387 351 96 0 0 chr9 99000719 99000771 -18861856 + (TG)n Simple_repeat Simple_repeat 1 52 0 337 219 52 42 chr9 99000771 99000867 -18861760 + L1MC4 LINE L1 6615 6711 -1331 212 152 43 0 chr9 99000869 99000915 -18861712 + (TATG)n Simple_repeat Simple_repeat 2 49 0 399 276 125 16 chr9 99001095 99001287 -18861340 - MIR SINE MIR -1 261 49 916 294 83 64 chr9 99001679 99002257 -18860370 - MER45C DNA AcHobo -361 592 4 640 283 146 5 chr9 99002282 99002494 -18860133 + MIR SINE MIR 18 259 -3 634 272 39 27 chr9 99002809 99003140 -18859487 - L1ME4a LINE L1 -237 5884 5550 481 248 0 17 chr9 99003228 99003345 -18859282 - MIR SINE MIR -108 154 40 245 215 11 65 chr9 99003569 99003662 -18858965 + CT-rich Low_complexity Low_complexity 4 91 0 22 35 0 0 chr9 99003865 99003894 -18858733 + AT_rich Low_complexity Low_complexity 1 29 0 1942 44 52 0 chr9 99004146 99004421 -18858206 + AluY SINE Alu 32 319 0 566 255 77 39 chr9 99005834 99006042 -18856585 - MIR SINE MIR -3 259 44 25 31 0 0 chr9 99006278 99006310 -18856317 + AT_rich Low_complexity Low_complexity 1 32 0 216 286 0 16 chr9 99006350 99006413 -18856214 + GA-rich Low_complexity Low_complexity 3 64 0 2173 113 3 7 chr9 99006759 99007068 -18855559 + AluSq SINE Alu 1 308 -5 190 404 18 0 chr9 99007802 99007916 -18854711 + MIR3 SINE MIR 87 202 -6 373 306 120 11 chr9 99008675 99008858 -18853769 + MIR SINE MIR 16 218 -44 285 210 16 0 chr9 99009205 99009267 -18853360 + MLT1A1 LTR MaLR 29 91 -274 240 352 132 0 chr9 99009503 99009594 -18853033 + L2 LINE L2 3141 3243 -29 256 152 50 119 chr9 99010905 99011018 -18851609 - MLT1J LTR MaLR 0 549 321 553 254 8 8 chr9 99011548 99011678 -18850949 + MIR3 SINE MIR 78 207 -1 843 251 74 9 chr9 99011693 99011908 -18850719 + MIR SINE MIR 1 229 -33 282 206 29 29 chr9 99011982 99012084 -18850543 + (TA)n Simple_repeat Simple_repeat 1 102 0 556 306 5 16 chr9 99012186 99012372 -18850255 - MLT1J LTR MaLR -327 184 1 213 284 111 49 chr9 99012389 99012470 -18850157 - L2 LINE L2 -69 3203 3118 25 31 0 0 chr9 99014073 99014105 -18848522 + AT_rich Low_complexity Low_complexity 1 32 0 267 317 0 10 chr9 99014365 99014469 -18848158 - MIR SINE MIR -64 144 42 503 250 8 0 chr9 99014987 99015107 -18847520 + L1ME LINE L1 5562 5682 -439 3937 135 9 5 chr9 99015131 99015761 -18846866 - MER41B LTR ERV1 -1 634 2 23 0 0 0 chr9 99015770 99015793 -18846834 + AT_rich Low_complexity Low_complexity 1 23 0 1882 113 3 28 chr9 99015793 99016077 -18846550 + AluSx SINE Alu 35 311 -1 477 279 0 8 chr9 99016271 99016393 -18846234 - L2 LINE L2 0 3313 3193 2150 148 31 14 chr9 99016531 99016889 -18845738 - THE1B LTR MaLR 0 364 1 511 298 38 6 chr9 99017294 99017452 -18845175 + MIR SINE MIR 89 251 -11 330 291 146 6 chr9 99018056 99018221 -18844406 + MIR SINE MIR 74 261 -1 21 57 0 0 chr9 99018389 99018424 -18844203 + AT_rich Low_complexity Low_complexity 1 35 0 1896 117 40 7 chr9 99018869 99019172 -18843455 + AluSx SINE Alu 1 312 0 206 105 26 0 chr9 99019364 99019402 -18843225 + (TTTG)n Simple_repeat Simple_repeat 1 39 0 235 330 78 0 chr9 99019467 99019582 -18843045 + MLT1J LTR MaLR 1 124 -387 838 180 0 56 chr9 99019670 99019848 -18842779 - MER58A DNA MER1_type -15 209 42 5327 214 119 92 chr9 99019850 99021225 -18841402 + L1MDa LINE L1 73 1409 -5131 598 226 95 29 chr9 99021225 99021362 -18841265 + FAM SINE Alu 16 161 -24 5327 214 119 92 chr9 99021362 99022577 -18840050 + L1MDa LINE L1 1409 2874 -3666 319 274 27 20 chr9 99022565 99022711 -18839916 + L1MDa LINE L1 3150 3296 -3244 * 5888 111 16 26 chr9 99022714 99023853 -18838774 - L1PA14 LINE L1 -1 6160 5031 31118 36 4 6 chr9 99023853 99028623 -18834004 - L1PA4 LINE L1 -6 6149 1392 1792 202 5 0 chr9 99028617 99028994 -18833633 - L1PA14 LINE L1 -1101 5045 4667 * 617 279 52 49 chr9 99029013 99029510 -18833117 + L1MDa LINE L1 3309 3957 -2583 2211 122 3 0 chr9 99029510 99029806 -18832821 - AluSx SINE Alu -14 298 2 617 279 52 49 chr9 99029806 99030099 -18832528 + L1MDa LINE L1 3957 4248 -2292 309 209 0 15 chr9 99030207 99030274 -18832353 + L1MDa LINE L1 4183 4248 -2292 1456 251 48 58 chr9 99030405 99031026 -18831601 + MER21B LTR ERV1 100 714 -149 501 258 33 14 chr9 99031086 99031299 -18831328 + L1MDa LINE L1 4247 4463 -2077 328 292 53 9 chr9 99031325 99031438 -18831189 - MER21B LTR ERV1 -557 306 189 1553 243 128 27 chr9 99031438 99032150 -18830477 + L1MDa LINE L1 4476 5259 -1281 355 131 0 0 chr9 99032153 99032214 -18830413 + MLT1D LTR MaLR 445 505 0 234 224 35 0 chr9 99032217 99032275 -18830352 + Charlie1 DNA MER1_type 2701 2760 -1 187 324 40 61 chr9 99032282 99032430 -18830197 + MIR SINE MIR 87 231 -31 1887 176 16 0 chr9 99032541 99032848 -18829779 + AluSq SINE Alu 1 312 -1 205 264 28 42 chr9 99033453 99033525 -18829102 - L2 LINE L2 0 3313 3243 231 325 133 17 chr9 99033854 99033974 -18828653 + L2 LINE L2 3136 3269 -3 837 192 55 82 chr9 99034022 99034350 -18828277 + MER33 DNA MER1_type 2 320 -4 239 243 143 0 chr9 99035196 99035266 -18827361 - MER5A DNA MER1_type -83 106 27 278 328 35 58 chr9 99035860 99036034 -18826593 - MIR SINE MIR -87 175 6 2050 135 3 0 chr9 99036224 99036521 -18826106 - AluSq SINE Alu -15 298 1 251 140 20 0 chr9 99037167 99037217 -18825410 + (TG)n Simple_repeat Simple_repeat 2 52 0 303 220 0 0 chr9 99038378 99038437 -18824190 - MIR SINE MIR -127 135 77 1380 157 31 0 chr9 99039422 99039645 -18822982 - MER30 DNA MER1_type 0 230 1 410 364 17 23 chr9 99039715 99039891 -18822736 + MIR3 SINE MIR 16 190 -18 595 268 74 25 chr9 99040040 99040283 -18822344 + MIR SINE MIR 2 256 -6 234 191 0 0 chr9 99040285 99040327 -18822300 + (CAT)n Simple_repeat Simple_repeat 1 42 0 206 416 20 0 chr9 99040463 99040564 -18822063 - MIR SINE MIR -70 138 36 2425 64 0 29 chr9 99040764 99041075 -18821552 + AluY SINE Alu 1 302 -9 246 341 6 34 chr9 99041139 99041318 -18821309 + (CATA)n Simple_repeat Simple_repeat 3 176 0 267 331 29 58 chr9 99041554 99041592 -18821035 - MIR3 SINE MIR -8 200 162 351 271 73 28 chr9 99041592 99041769 -18820858 - MER5A DNA MER1_type -3 186 2 267 331 29 58 chr9 99041769 99041902 -18820725 - MIR3 SINE MIR -46 162 34 291 28 0 0 chr9 99041986 99042022 -18820605 + (TC)n Simple_repeat Simple_repeat 1 36 0 326 293 95 40 chr9 99042178 99042431 -18820196 - MLT1J LTR MaLR 0 511 245 221 382 91 18 chr9 99042716 99042826 -18819801 - L2 LINE L2 -5 3267 3150 473 333 81 67 chr9 99043034 99043394 -18819233 + L2 LINE L2 2883 3247 -25 246 231 44 66 chr9 99043494 99043585 -18819042 + MIR3 SINE MIR 103 191 -17 417 277 92 0 chr9 99043593 99043712 -18818915 + MIR3 SINE MIR 58 187 -21 351 297 47 31 chr9 99044507 99044635 -18817992 + MIR SINE MIR 19 148 -60 1316 223 78 101 chr9 99044650 99044835 -18817792 - MLT1H1 LTR MaLR 0 555 367 1182 77 0 22 chr9 99044835 99045018 -18817609 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1316 223 78 101 chr9 99045018 99045031 -18817596 - MLT1H1 LTR MaLR -188 367 355 2053 82 0 0 chr9 99045031 99045288 -18817339 - AluSx SINE Alu -39 273 17 1316 223 78 101 chr9 99045288 99045653 -18816974 - MLT1H1 LTR MaLR -200 355 4 253 198 25 62 chr9 99045712 99045793 -18816834 + MER103 DNA DNA 8 85 -81 892 300 175 32 chr9 99045814 99046311 -18816316 - L2 LINE L2 -27 3286 2862 1835 83 0 69 chr9 99046311 99046587 -18816040 + AluSx SINE Alu 35 291 -21 892 300 175 32 chr9 99046587 99046845 -18815782 - L2 LINE L2 -451 2862 2420 2103 169 73 40 chr9 99046958 99047454 -18815173 - MER67D LTR ERV1 0 514 3 299 315 127 45 chr9 99047607 99047823 -18814804 + L2 LINE L2 2920 3164 -149 312 27 0 0 chr9 99047823 99047860 -18814767 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 299 315 127 45 chr9 99047860 99047910 -18814717 + L2 LINE L2 3164 3208 -105 578 303 82 24 chr9 99047913 99048292 -18814335 + L1ME4a LINE L1 5690 6090 -31 407 291 188 19 chr9 99050055 99050268 -18812359 - MIR SINE MIR -13 249 1 902 190 17 6 chr9 99050439 99050613 -18812014 - MER5A DNA MER1_type 0 189 14 386 324 101 5 chr9 99050694 99050913 -18811714 + MIR SINE MIR 21 260 -2 24 0 0 0 chr9 99051443 99051467 -18811160 + AT_rich Low_complexity Low_complexity 1 24 0 656 298 38 21 chr9 99051938 99052176 -18810451 - MIR SINE MIR -1 261 20 183 300 100 0 chr9 99052340 99052390 -18810237 - L2 LINE L2 -8 3264 3210 212 271 0 0 chr9 99052516 99052564 -18810063 - L2 LINE L2 -224 3048 3001 207 0 0 0 chr9 99052912 99052935 -18809692 + (T)n Simple_repeat Simple_repeat 1 23 0 237 286 48 12 chr9 99053155 99053239 -18809388 - L2 LINE L2 -2 3270 3184 392 37 19 0 chr9 99053281 99053335 -18809292 + (TG)n Simple_repeat Simple_repeat 1 55 0 382 304 61 0 chr9 99053380 99053495 -18809132 - L2 LINE L2 0 3272 3151 704 283 150 40 chr9 99054346 99054700 -18807927 - MLT1I LTR MaLR -16 393 1 573 327 9 40 chr9 99054932 99055158 -18807469 + MIR SINE MIR 44 262 0 187 396 38 9 chr9 99055237 99055343 -18807284 - MIR SINE MIR -123 139 31 1872 156 48 3 chr9 99055569 99055902 -18806725 - MLT1B LTR MaLR -1 389 42 528 277 80 60 chr9 99056794 99056970 -18805657 + MIR SINE MIR 9 193 -69 2352 92 13 3 chr9 99056970 99057276 -18805351 - AluSc SINE Alu 0 309 1 528 277 80 60 chr9 99057276 99057348 -18805279 + MIR SINE MIR 193 262 0 343 335 87 8 chr9 99057481 99057723 -18804904 + MIR SINE MIR 2 262 0 3098 199 33 8 chr9 99057810 99058470 -18804157 - L1 LINE L1 -855 5291 4615 2543 182 12 12 chr9 99058475 99058974 -18803653 + L1MA9 LINE L1 5641 6139 -173 321 115 0 0 chr9 99058983 99059035 -18803592 - L1MA5A LINE L1 -2 6295 6244 * 709 170 176 0 chr9 99059031 99059190 -18803437 + L1MA9 LINE L1 6122 6308 -4 190 227 0 0 chr9 99059684 99059728 -18802899 + L2 LINE L2 3268 3311 -2 290 182 15 0 chr9 99059737 99059803 -18802824 + (TCTA)n Simple_repeat Simple_repeat 1 67 0 4143 87 8 13 chr9 99060443 99061043 -18801584 - L1PA12 LINE L1 0 6168 5572 225 291 29 0 chr9 99061051 99061154 -18801473 + (TA)n Simple_repeat Simple_repeat 1 106 0 211 381 81 34 chr9 99061280 99061661 -18800966 + L2 LINE L2 2452 2850 -464 330 306 41 6 chr9 99061948 99062118 -18800509 - L1ME4a LINE L1 -2 6053 5878 316 303 50 25 chr9 99062398 99062517 -18800110 - L1ME4a LINE L1 -2181 5561 5440 26 50 0 0 chr9 99062647 99062687 -18799940 + AT_rich Low_complexity Low_complexity 1 40 0 223 319 172 25 chr9 99063128 99063291 -18799336 - MIR SINE MIR -73 189 3 431 237 124 12 chr9 99063433 99063602 -18799025 - L1ME3A LINE L1 -76 6094 5907 1519 257 84 44 chr9 99063616 99064658 -18797969 - L1ME4a LINE L1 -746 5334 4251 2418 166 2 42 chr9 99064731 99064956 -18797671 - Tigger2a DNA MER2_type -2274 434 234 6287 36 9 1 chr9 99064956 99065723 -18796904 + L1PA4 LINE L1 5382 6154 -1 2418 166 2 42 chr9 99065723 99065949 -18796678 - Tigger2a DNA MER2_type -2474 234 1 1722 166 0 36 chr9 99065987 99066288 -18796339 + AluJb SINE Alu 6 295 -17 23 0 0 0 chr9 99066733 99066756 -18795871 + AT_rich Low_complexity Low_complexity 1 23 0 887 269 108 48 chr9 99066884 99067613 -18795014 - L1ME4a LINE L1 -2944 3136 2364 311 259 29 92 chr9 99067735 99067909 -18794718 - L1ME4a LINE L1 -4314 1947 1785 192 40 0 0 chr9 99067909 99067934 -18794693 + (CA)n Simple_repeat Simple_repeat 2 26 0 315 315 0 0 chr9 99067941 99068030 -18794597 - L1MC4 LINE L1 -1339 6703 6615 435 308 0 0 chr9 99068068 99068240 -18794387 + (TA)n Simple_repeat Simple_repeat 1 172 0 591 272 0 0 chr9 99068254 99068434 -18794193 + (TA)n Simple_repeat Simple_repeat 1 180 0 4557 160 34 3 chr9 99068601 99069451 -18793176 + L1 LINE L1 3600 4475 -1671 1118 255 103 72 chr9 99069450 99070495 -18792132 - L1ME4a LINE L1 -4579 1682 467 * 2457 76 0 0 chr9 99070496 99070798 -18791829 - AluY SINE Alu -9 302 1 280 305 7 40 chr9 99070807 99070958 -18791669 - L1ME4a LINE L1 -5468 602 457 251 325 25 38 chr9 99071268 99071425 -18791202 - L1ME4a LINE L1 -5597 473 319 2209 112 3 10 chr9 99071869 99072174 -18790453 + AluSx SINE Alu 1 303 -9 249 340 34 14 chr9 99072610 99072757 -18789870 + L2 LINE L2 3159 3308 -5 313 173 123 49 chr9 99072852 99072933 -18789694 - MIR SINE MIR -64 144 58 308 264 127 27 chr9 99073413 99073523 -18789104 + MIR SINE MIR 19 139 -69 244 344 158 42 chr9 99073945 99074132 -18788495 - L2 LINE L2 -1 3312 3148 3433 163 7 2 chr9 99074132 99074729 -18787898 + L1PA15 LINE L1 5566 6165 0 244 344 158 42 chr9 99074729 99074965 -18787662 - L2 LINE L2 -165 3148 2840 299 376 65 11 chr9 99075887 99076150 -18786477 + L2 LINE L2 2584 2860 -454 355 316 98 40 chr9 99077047 99077221 -18785406 + MIR3 SINE MIR 19 202 -6 1109 177 64 32 chr9 99077463 99077683 -18784944 + MSTB LTR MaLR 1 227 -199 7587 189 65 18 chr9 99077748 99078276 -18784351 + MSTB-int LTR MaLR 81 583 -1068 1496 197 52 0 chr9 99078276 99078566 -18784061 + AluJo SINE Alu 1 305 -7 7587 189 65 18 chr9 99078566 99079537 -18783090 + MSTB-int LTR MaLR 583 1651 0 2453 188 17 5 chr9 99079537 99079958 -18782669 + MSTB LTR MaLR 1 426 0 459 298 57 7 chr9 99079989 99080130 -18782497 + MIR SINE MIR 29 176 -86 4942 153 15 7 chr9 99080148 99080963 -18781664 + Tigger1 DNA MER2_type 1 821 -1597 1412 178 49 7 chr9 99080950 99081236 -18781391 + Tigger1 DNA MER2_type 2121 2418 0 * 23 0 0 0 chr9 99081420 99081443 -18781184 + AT_rich Low_complexity Low_complexity 1 23 0 233 345 115 0 chr9 99081487 99081622 -18781005 - MIR SINE MIR -87 121 16 2289 81 0 3 chr9 99083556 99083875 -18778752 + AluY SINE Alu 1 318 0 874 197 72 19 chr9 99084497 99084705 -18777922 - MER20 DNA MER1_type 0 219 1 2262 108 0 3 chr9 99085180 99085486 -18777141 + AluSc SINE Alu 1 305 -4 446 239 63 21 chr9 99085535 99085677 -18776950 - MIR SINE MIR -39 223 76 210 182 30 45 chr9 99085694 99085760 -18776867 + (CATATA)n Simple_repeat Simple_repeat 5 69 0 342 234 45 134 chr9 99088071 99088273 -18774354 - MIR SINE MIR -56 206 13 182 254 218 27 chr9 99088628 99088738 -18773889 - L2 LINE L2 0 3313 3183 * 222 300 78 0 chr9 99088706 99088796 -18773831 + MIR3 SINE MIR 57 154 -54 26 0 0 0 chr9 99088882 99088908 -18773719 + AT_rich Low_complexity Low_complexity 1 26 0 396 229 0 0 chr9 99089023 99089132 -18773495 + CT-rich Low_complexity Low_complexity 3 111 0 181 361 42 0 chr9 99089182 99089301 -18773326 - L2 LINE L2 -18 3295 3172 276 216 232 32 chr9 99089390 99089515 -18773112 + L1MC5 LINE L1 7311 7460 -501 235 272 48 19 chr9 99089550 99089653 -18772974 + L1ME3A LINE L1 5914 6019 -151 296 218 144 43 chr9 99089799 99089987 -18772640 + L1MC5 LINE L1 7481 7687 -274 239 192 14 27 chr9 99090052 99090125 -18772502 + L1MC5 LINE L1 7701 7772 -189 1011 232 18 0 chr9 99090138 99090358 -18772269 + MER58A DNA MER1_type 1 224 0 261 98 16 49 chr9 99090393 99090454 -18772173 + (GGGAA)n Simple_repeat Simple_repeat 4 62 0 390 312 106 11 chr9 99090483 99090672 -18771955 + L2 LINE L2 2536 2742 -572 373 311 175 24 chr9 99090759 99091090 -18771537 + L2 LINE L2 2879 3259 -54 222 37 0 0 chr9 99091099 99091126 -18771501 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 257 304 43 11 chr9 99091311 99091403 -18771224 - L2 LINE L2 -4 3309 3215 370 280 103 34 chr9 99091457 99091632 -18770995 - MIR SINE MIR -5 257 71 284 320 158 15 chr9 99091882 99092085 -18770542 + MIR SINE MIR 13 244 -18 228 349 83 6 chr9 99092400 99092569 -18770058 - L2 LINE L2 -537 2777 2596 540 183 32 0 chr9 99092621 99092714 -18769913 - MER20 DNA MER1_type -92 127 32 817 201 63 47 chr9 99093354 99093673 -18768954 + MER33 DNA MER1_type 1 324 0 5235 43 0 0 chr9 99093891 99094540 -18768087 - L1PA3 LINE L1 -2220 3926 3278 12509 21 12 0 chr9 99094540 99096759 -18765868 + L1PA3 LINE L1 3922 6152 -3 1432 247 8 30 chr9 99097535 99097908 -18764719 + MLT1A1 LTR MaLR 1 365 0 724 286 107 34 chr9 99098003 99098359 -18764268 - MLT1J2 LTR MaLR -68 382 1 22 56 0 0 chr9 99098381 99098417 -18764210 + AT_rich Low_complexity Low_complexity 1 36 0 941 195 40 0 chr9 99098417 99098591 -18764036 - MER20 DNA MER1_type 0 219 39 507 321 37 0 chr9 99098941 99099103 -18763524 - MER117 DNA MER1_type -17 180 13 324 214 79 0 chr9 99099107 99099196 -18763431 - MIR3 SINE MIR -37 171 76 2240 105 20 0 chr9 99099445 99099749 -18762878 - AluSp SINE Alu -1 312 3 200 289 132 25 chr9 99100851 99100972 -18761655 + MIR SINE MIR 21 154 -108 306 272 79 18 chr9 99101110 99101224 -18761403 + MIR SINE MIR 110 230 -32 198 0 0 0 chr9 99101265 99101287 -18761340 + (A)n Simple_repeat Simple_repeat 1 22 0 578 169 8 0 chr9 99101288 99101406 -18761221 + (TA)n Simple_repeat Simple_repeat 1 119 0 289 91 0 0 chr9 99101610 99101654 -18760973 + U5 snRNA snRNA 1 44 -72 368 327 80 18 chr9 99102042 99102268 -18760359 - L2 LINE L2 -523 2791 2552 223 275 0 133 chr9 99102445 99102565 -18760062 - MIR SINE MIR -97 111 8 351 258 62 0 chr9 99102794 99102891 -18759736 - L2 LINE L2 -661 2653 2551 363 121 0 0 chr9 99103029 99103087 -18759540 + (TC)n Simple_repeat Simple_repeat 1 58 0 367 289 29 87 chr9 99103157 99103465 -18759162 - MIR SINE MIR -1 261 5 32 43 0 0 chr9 99103500 99103546 -18759081 + AT_rich Low_complexity Low_complexity 1 46 0 421 264 48 104 chr9 99103852 99103870 -18758757 - L1M4 LINE L1 -2154 3992 3975 2500 63 7 0 chr9 99103870 99104170 -18758457 + AluSc SINE Alu 1 302 -7 421 264 48 104 chr9 99104170 99104507 -18758120 - L1M4 LINE L1 -2171 3975 3657 793 292 102 51 chr9 99104592 99105248 -18757379 - L1M4 LINE L1 -2926 3220 2522 2054 131 3 29 chr9 99105265 99105579 -18757048 - AluSx SINE Alu -6 306 1 1040 259 23 44 chr9 99106194 99106626 -18756001 - HAL1b LINE L1 -496 852 430 432 0 0 0 chr9 99106689 99106737 -18755890 + (TG)n Simple_repeat Simple_repeat 2 49 0 23 0 0 0 chr9 99107159 99107182 -18755445 + AT_rich Low_complexity Low_complexity 1 23 0 2111 182 59 0 chr9 99108176 99108637 -18753990 + L1MC3 LINE L1 5444 5931 -1854 216 216 0 0 chr9 99108677 99108728 -18753899 + (AAATG)n Simple_repeat Simple_repeat 3 53 0 225 347 11 0 chr9 99108936 99109031 -18753596 + MLT1J2 LTR MaLR 85 180 -270 291 338 22 7 chr9 99109095 99109231 -18753396 + MLT1J2 LTR MaLR 279 416 -34 26 0 0 0 chr9 99109540 99109566 -18753061 + AT_rich Low_complexity Low_complexity 1 26 0 270 339 42 25 chr9 99109645 99109763 -18752864 - MIR3 SINE MIR -85 123 4 185 339 32 24 chr9 99109959 99110083 -18752544 + MIR SINE MIR 2 126 -136 196 410 105 0 chr9 99111873 99111978 -18750649 + L2 LINE L2 3198 3313 0 1792 261 53 49 chr9 99113031 99113618 -18749009 - MER77 LTR ERV1 -7 598 10 195 192 19 39 chr9 99113817 99113869 -18748758 + L2 LINE L2 3262 3312 -1 198 263 114 26 chr9 99113951 99114065 -18748562 + MIR SINE MIR 109 232 -30 300 368 8 8 chr9 99114648 99114773 -18747854 + MIR SINE MIR 23 147 -61 347 322 8 25 chr9 99114799 99114920 -18747707 - L2 LINE L2 -5 3308 3190 1734 190 15 52 chr9 99115523 99115928 -18746699 - MLT1B LTR MaLR 0 390 1 306 0 0 0 chr9 99116103 99116137 -18746490 + (TTG)n Simple_repeat Simple_repeat 2 35 0 700 281 37 20 chr9 99116526 99116772 -18745855 - MIR SINE MIR -6 256 7 265 325 49 55 chr9 99117324 99117487 -18745140 + L2 LINE L2 2715 2876 -438 2819 65 6 0 chr9 99117926 99118279 -18744348 + THE1A LTR MaLR 1 355 0 1906 124 79 3 chr9 99118772 99119062 -18743565 - AluSx SINE Alu 0 312 1 512 224 60 127 chr9 99119318 99119586 -18743041 - MIR SINE MIR 0 262 13 395 244 168 8 chr9 99119639 99119770 -18742857 + MIR SINE MIR 97 248 -14 431 277 9 77 chr9 99120800 99120938 -18741689 + MIR SINE MIR 58 177 -85 1566 166 55 60 chr9 99120938 99121305 -18741322 + MLT1A1 LTR MaLR 1 365 0 431 277 9 77 chr9 99121305 99121386 -18741241 + MIR SINE MIR 177 262 0 228 196 98 0 chr9 99121439 99121490 -18741137 - L2 LINE L2 -3 3310 3255 * 587 264 86 36 chr9 99121461 99121681 -18740946 - MIR SINE MIR -24 238 8 204 320 0 20 chr9 99121725 99121775 -18740852 + MIR SINE MIR 22 70 -138 22 0 0 0 chr9 99121865 99121887 -18740740 + AT_rich Low_complexity Low_complexity 1 22 0 204 40 0 0 chr9 99123513 99123538 -18739089 + (TG)n Simple_repeat Simple_repeat 2 26 0 28 0 0 0 chr9 99123733 99123761 -18738866 + AT_rich Low_complexity Low_complexity 1 28 0 256 267 25 43 chr9 99123862 99124023 -18738604 - L1M4 LINE L1 -3754 2392 2235 314 338 73 0 chr9 99126398 99126534 -18736093 + L3 LINE CR1 1429 1574 -3 21 0 0 0 chr9 99127029 99127050 -18735577 + AT_rich Low_complexity Low_complexity 1 21 0 339 364 45 11 chr9 99127163 99127339 -18735288 + MIR3 SINE MIR 5 186 -22 207 139 0 0 chr9 99127907 99127943 -18734684 + (TTTTG)n Simple_repeat Simple_repeat 5 40 0 514 342 43 5 chr9 99129243 99129427 -18733200 + MIR3 SINE MIR 8 198 -10 2123 65 10 0 chr9 99129731 99130021 -18732606 + L1PA7 LINE L1 5490 5782 -372 * 40751 32 22 5 chr9 99130018 99136070 -18726557 + L1PA2 LINE L1 1 6155 0 2921 70 0 10 chr9 99136082 99136467 -18726160 + L1PA7 LINE L1 5769 6149 -5 352 263 217 15 chr9 99136848 99137043 -18725584 + MIR SINE MIR 30 262 0 202 273 273 0 chr9 99137066 99137165 -18725462 - MIR SINE MIR -66 142 17 192 125 0 0 chr9 99137216 99137248 -18725379 + (ATGGTG)n Simple_repeat Simple_repeat 4 35 0 534 276 112 14 chr9 99137405 99137619 -18725008 + MIR SINE MIR 2 236 -26 202 187 27 120 chr9 99137996 99138071 -18724556 + L2 LINE L2 3205 3272 0 278 276 97 27 chr9 99139540 99139693 -18722934 - MIR SINE MIR -3 259 84 434 292 50 59 chr9 99140508 99140727 -18721900 - MIR SINE MIR -41 221 5 258 32 0 0 chr9 99141412 99141443 -18721184 + (TG)n Simple_repeat Simple_repeat 2 32 0 345 279 5 0 chr9 99142345 99142430 -18720197 + MIR SINE MIR 77 149 -59 489 300 123 6 chr9 99142736 99142906 -18719721 + MIR SINE MIR 54 243 -19 1359 248 106 53 chr9 99142999 99143361 -18719266 + L1ME3A LINE L1 4887 5229 -941 1645 216 36 14 chr9 99143361 99143718 -18718909 + MLT1A1 LTR MaLR 1 365 0 1359 248 106 53 chr9 99143718 99144563 -18718064 + L1ME3A LINE L1 5229 6161 -9 351 256 24 0 chr9 99144744 99144826 -18717801 - MIR SINE MIR -75 133 50 235 256 24 61 chr9 99145647 99145729 -18716898 - MIR SINE MIR -126 136 58 1655 192 30 40 chr9 99145731 99146101 -18716526 + ERVL LTR ERVL 1843 2208 -3556 211 157 20 20 chr9 99146199 99146250 -18716377 + (CAA)n Simple_repeat Simple_repeat 1 51 0 12508 223 55 53 chr9 99146410 99149407 -18713220 + L1MA9 LINE L1 10 2999 -4334 1564 170 3 68 chr9 99149407 99149718 -18712909 + AluJo SINE Alu 1 291 -21 12508 223 55 53 chr9 99149718 99153816 -18708811 + L1MA9 LINE L1 2999 6830 -503 889 243 103 37 chr9 99153816 99154137 -18708490 + MER2 DNA MER2_type 1 342 -2 12508 223 55 53 chr9 99154137 99154604 -18708023 + L1MA9 LINE L1 6830 7295 -38 1346 278 58 17 chr9 99154697 99155215 -18707412 + MLT1H1 LTR MaLR 17 555 0 1399 260 78 17 chr9 99155422 99155884 -18706743 + MLT1E2 LTR MaLR 137 626 0 270 379 86 0 chr9 99156056 99156196 -18706431 + L2 LINE L2 3108 3259 -13 246 62 0 0 chr9 99156196 99156228 -18706399 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 291 242 30 0 chr9 99156315 99156381 -18706246 + MIR SINE MIR 82 149 -59 565 279 136 0 chr9 99157111 99157265 -18705362 + MER5A DNA MER1_type 15 189 0 417 242 161 0 chr9 99157538 99157662 -18704965 - MIR SINE MIR -8 254 111 331 312 11 11 chr9 99157924 99158017 -18704610 - L2 LINE L2 -37 3235 3143 485 314 13 13 chr9 99158259 99158415 -18704212 + MIR SINE MIR 107 262 0 2221 117 0 3 chr9 99159602 99159902 -18702725 - AluSx SINE Alu -13 299 1 501 246 8 8 chr9 99159982 99160104 -18702523 - MIR SINE MIR -84 178 57 412 300 23 15 chr9 99160859 99160989 -18701638 + MIR3 SINE MIR 30 160 -48 204 364 53 23 chr9 99161107 99161239 -18701388 - L2 LINE L2 -3 3269 3134 1832 194 0 6 chr9 99161269 99161583 -18701044 + AluJo SINE Alu 1 312 0 557 349 46 57 chr9 99161678 99162176 -18700451 - L2 LINE L2 -200 3072 2581 204 216 0 0 chr9 99162304 99162341 -18700286 - L3b LINE CR1 -15 1568 1532 189 0 0 0 chr9 99162365 99162386 -18700241 + (GAAA)n Simple_repeat Simple_repeat 4 24 0 313 208 30 0 chr9 99162798 99162899 -18699728 + CT-rich Low_complexity Low_complexity 2 105 0 647 285 132 0 chr9 99163003 99163231 -18699396 + MIR SINE MIR 3 260 -2 286 279 0 58 chr9 99163365 99163451 -18699176 - MIR SINE MIR -80 182 102 190 364 0 0 chr9 99163628 99163694 -18698933 + L2 LINE L2 3234 3299 -14 225 227 0 0 chr9 99163808 99163852 -18698775 + L2 LINE L2 3221 3264 -8 326 252 99 46 chr9 99164190 99164321 -18698306 + MIR SINE MIR 66 203 -59 990 272 4 4 chr9 99164410 99164649 -18697978 - MIR SINE MIR 0 262 24 810 251 186 44 chr9 99164818 99165269 -18697358 + MLT1G1 LTR MaLR 24 584 -4 675 249 12 12 chr9 99165403 99165568 -18697059 + MIR SINE MIR 86 250 -12 206 209 0 23 chr9 99165572 99165615 -18697012 + CT-rich Low_complexity Low_complexity 4 45 0 309 267 176 23 chr9 99165626 99165802 -18696825 - MIR SINE MIR -37 225 23 335 301 73 24 chr9 99166425 99166548 -18696079 - MIR3 SINE MIR -68 140 12 2148 158 0 69 chr9 99166884 99167067 -18695560 + MLT1B LTR MaLR 1 195 -195 2201 115 3 16 chr9 99167067 99167371 -18695256 + AluSx SINE Alu 5 304 -8 2148 158 0 69 chr9 99167371 99167606 -18695021 + MLT1B LTR MaLR 195 390 0 312 118 0 235 chr9 99168275 99168377 -18694250 - MADE1 DNA Mariner -2 78 1 330 233 33 22 chr9 99168483 99168573 -18694054 - MER20 DNA MER1_type -128 91 1 295 286 13 0 chr9 99168581 99168658 -18693969 + MIR SINE MIR 84 161 -101 252 315 55 14 chr9 99168989 99169062 -18693565 + L2 LINE L2 3160 3235 -37 27 29 0 0 chr9 99169312 99169346 -18693281 + AT_rich Low_complexity Low_complexity 1 34 0 999 249 103 22 chr9 99170098 99170220 -18692407 + MER113 DNA MER1_type? 1 112 -409 2167 105 13 7 chr9 99170220 99170526 -18692101 + AluSg SINE Alu 1 308 -2 999 249 103 22 chr9 99170526 99170849 -18691778 + MER113 DNA MER1_type? 112 482 -39 391 391 19 6 chr9 99170936 99171097 -18691530 - MIR3 SINE MIR -15 193 31 21 0 0 0 chr9 99171201 99171222 -18691405 + AT_rich Low_complexity Low_complexity 1 21 0 676 269 149 0 chr9 99171323 99171531 -18691096 - MIR SINE MIR -21 241 3 233 300 146 9 chr9 99171655 99171765 -18690862 + MIR SINE MIR 37 161 -101 2137 112 3 0 chr9 99172094 99172426 -18690201 - AluSq SINE Alu 0 333 1 258 289 92 13 chr9 99173410 99173486 -18689141 + MIR SINE MIR 24 105 -103 184 309 73 0 chr9 99173625 99173680 -18688947 - L2 LINE L2 -1 3312 3254 * 413 323 53 61 chr9 99173657 99174032 -18688595 + L2 LINE L2 2282 2653 -661 231 152 0 0 chr9 99174476 99174522 -18688105 + (CA)n Simple_repeat Simple_repeat 1 46 0 245 361 0 25 chr9 99174659 99174781 -18687846 - L2 LINE L2 -5 3267 3149 467 318 34 87 chr9 99175483 99176015 -18686612 - L2 LINE L2 -43 3229 2685 398 289 144 22 chr9 99176823 99177003 -18685624 + MIR SINE MIR 61 262 0 200 118 29 0 chr9 99177005 99177039 -18685588 + (ATG)n Simple_repeat Simple_repeat 1 35 0 320 314 81 47 chr9 99177125 99177447 -18685180 + L3 LINE CR1 1245 1577 0 245 51 26 0 chr9 99178239 99178278 -18684349 + (CA)n Simple_repeat Simple_repeat 2 41 0 229 250 0 0 chr9 99178279 99178327 -18684300 + GA-rich Low_complexity Low_complexity 1 48 0 24 53 0 0 chr9 99178451 99178489 -18684138 + AT_rich Low_complexity Low_complexity 1 38 0 189 383 11 38 chr9 99178700 99178883 -18683744 + L2 LINE L2 2812 2989 -324 273 343 45 40 chr9 99178932 99179133 -18683494 + L2 LINE L2 3112 3313 0 1099 90 0 3 chr9 99179134 99179368 -18683259 - AluSc SINE Alu -11 298 5 247 338 62 0 chr9 99179500 99179580 -18683047 - MIR SINE MIR -150 112 28 1248 191 87 66 chr9 99179771 99180137 -18682490 + MLT1A2 LTR MaLR 1 374 0 330 214 0 0 chr9 99180366 99180450 -18682177 + CT-rich Low_complexity Low_complexity 1 84 0 439 302 58 89 chr9 99180466 99180576 -18682051 - L2 LINE L2 -5 3267 3155 483 18 0 0 chr9 99180576 99180632 -18681995 + (GA)n Simple_repeat Simple_repeat 1 56 0 439 302 58 89 chr9 99180632 99180869 -18681758 - L2 LINE L2 -117 3155 2931 313 294 159 40 chr9 99182706 99182832 -18679795 + MIR SINE MIR 52 192 -70 495 217 9 0 chr9 99182833 99182948 -18679679 + L1ME1 LINE L1 6046 6161 -5 229 318 174 30 chr9 99183141 99183273 -18679354 + L2 LINE L2 3117 3267 -5 192 316 71 20 chr9 99183561 99183659 -18678968 + L2 LINE L2 3192 3294 -19 212 414 54 9 chr9 99183715 99183826 -18678801 - L2 LINE L2 -41 3231 3116 451 222 32 0 chr9 99184012 99184138 -18678489 - MER103 DNA DNA -11 155 26 760 279 38 21 chr9 99184156 99184446 -18678181 - MLT1I LTR MaLR -17 392 98 1748 153 19 6 chr9 99184617 99184937 -18677690 + L1MB4 LINE L1 5609 5932 -242 1105 183 110 54 chr9 99184937 99185254 -18677373 + MER2 DNA MER2_type 1 335 -10 991 208 38 0 chr9 99185282 99185518 -18677109 + L1MB4 LINE L1 5933 6177 -3 248 305 78 70 chr9 99185570 99185698 -18676929 - L2 LINE L2 -15 3257 3129 307 286 281 0 chr9 99186523 99186719 -18675908 + MIR SINE MIR 12 262 0 235 259 47 47 chr9 99186795 99186880 -18675747 - MIR SINE MIR -84 178 94 295 208 115 11 chr9 99187438 99187533 -18675094 + MIR SINE MIR 100 197 -39 305 344 8 8 chr9 99187713 99187835 -18674792 + CT-rich Low_complexity Low_complexity 3 124 0 294 296 45 11 chr9 99188799 99188887 -18673740 - L2 LINE L2 0 3272 3182 408 298 206 5 chr9 99188920 99189138 -18673489 - MIR SINE MIR 0 262 1 205 220 0 34 chr9 99189327 99189386 -18673241 + L2 LINE L2 3216 3272 0 21 0 0 0 chr9 99189744 99189765 -18672862 + AT_rich Low_complexity Low_complexity 1 21 0 241 291 66 66 chr9 99189935 99190131 -18672496 - L2 LINE L2 -559 2755 2560 202 200 0 40 chr9 99190289 99190364 -18672263 + GA-rich Low_complexity Low_complexity 3 74 0 498 248 12 6 chr9 99190646 99190807 -18671820 - MER104 DNA Tc2 -11 169 8 3081 293 92 29 chr9 99190808 99192147 -18670480 + L2 LINE L2 1414 2836 -478 326 286 82 27 chr9 99192162 99192309 -18670318 + L2 LINE L2 3159 3313 0 312 265 20 29 chr9 99192888 99192990 -18669637 + MIR SINE MIR 105 205 -57 221 117 17 83 chr9 99192994 99193054 -18669573 + A-rich Low_complexity Low_complexity 3 58 0 2261 242 59 28 chr9 99193269 99193498 -18669129 - L1ME3A LINE L1 -30 6140 5912 711 286 53 40 chr9 99193498 99194291 -18668336 - L1MB4 LINE L1 -260 5920 5106 466 363 30 0 chr9 99194615 99194877 -18667750 + L2 LINE L2 2503 2772 -542 317 341 71 68 chr9 99195007 99195318 -18667309 + L2 LINE L2 2951 3262 -10 604 348 140 34 chr9 99195409 99195938 -18666689 - L3 LINE CR1 -1 1576 992 294 257 57 74 chr9 99195945 99196120 -18666507 - MER69A DNA AcHobo -4 173 2 285 167 83 56 chr9 99196215 99196287 -18666340 + MIR SINE MIR 2 75 -187 581 315 83 45 chr9 99196827 99196965 -18665662 - L1ME4a LINE L1 0 6121 5990 2233 84 0 7 chr9 99196965 99197280 -18665347 - AluY SINE Alu 0 313 1 581 315 83 45 chr9 99197280 99197297 -18665330 - L1ME4a LINE L1 -131 5990 5975 2106 121 0 0 chr9 99197297 99197578 -18665049 - AluSg SINE Alu -29 281 1 581 315 83 45 chr9 99197578 99197912 -18664715 - L1ME4a LINE L1 -146 5975 5611 260 340 186 0 chr9 99198669 99198863 -18663764 + MIR SINE MIR 18 247 -15 374 318 61 7 chr9 99199208 99199356 -18663271 + MIR SINE MIR 17 172 -90 36 23 0 0 chr9 99199452 99199495 -18663132 + AT_rich Low_complexity Low_complexity 1 43 0 2216 121 0 3 chr9 99199607 99199912 -18662715 + AluSc SINE Alu 1 304 -5 668 251 35 0 chr9 99200744 99200915 -18661712 - MER3 DNA MER1_type -79 130 1 976 222 0 0 chr9 99200949 99201129 -18661498 + MER58A DNA MER1_type 45 224 0 323 336 18 0 chr9 99201129 99201242 -18661385 + MIR SINE MIR 39 153 -55 237 269 115 0 chr9 99201396 99201474 -18661153 + MER94 DNA DNA 44 130 -4 335 256 32 16 chr9 99202179 99202304 -18660323 + CT-rich Low_complexity Low_complexity 6 132 0 5051 67 24 6 chr9 99202677 99203304 -18659323 - L1PA10 LINE L1 -8 6160 5523 300 187 56 122 chr9 99203332 99203439 -18659188 + Charlie5 DNA MER1_type 2525 2624 0 212 294 49 29 chr9 99203652 99203754 -18658873 + L2 LINE L2 2948 3051 -221 186 263 0 0 chr9 99204081 99204138 -18658489 + (TAGA)n Simple_repeat Simple_repeat 3 59 0 207 100 0 0 chr9 99204808 99204838 -18657789 + (CA)n Simple_repeat Simple_repeat 1 30 0 289 282 16 89 chr9 99205477 99205601 -18657026 - MIR SINE MIR -58 150 36 563 274 47 37 chr9 99205652 99205795 -18656832 - MIR SINE MIR -26 236 89 3635 72 20 0 chr9 99205795 99206239 -18656388 + MLT2A2 LTR ERVL 1 453 0 563 274 47 37 chr9 99206239 99206310 -18656317 - MIR SINE MIR -173 89 20 2463 54 3 22 chr9 99206989 99207303 -18655324 + AluY SINE Alu 1 308 -3 266 218 269 0 chr9 99207362 99207440 -18655187 + MIR SINE MIR 53 151 -111 219 328 156 0 chr9 99207583 99207711 -18654916 + L2 LINE L2 2930 3077 -195 203 319 78 69 chr9 99209273 99209389 -18653238 + L2 LINE L2 3125 3241 -31 396 0 0 0 chr9 99209424 99209468 -18653159 + (GGAA)n Simple_repeat Simple_repeat 1 44 0 970 143 0 11 chr9 99209468 99209650 -18652977 + (GGGA)n Simple_repeat Simple_repeat 1 180 0 656 181 0 7 chr9 99209651 99209789 -18652838 + GA-rich Low_complexity Low_complexity 2 138 0 315 255 220 35 chr9 99210883 99211024 -18651603 - L2 LINE L2 -89 3183 3017 814 191 0 0 chr9 99211090 99211221 -18651406 + FLAM_A SINE Alu 10 140 -2 318 226 32 54 chr9 99211443 99211536 -18651091 + MLT1E LTR MaLR 76 166 -401 421 292 6 6 chr9 99211562 99211730 -18650897 + CT-rich Low_complexity Low_complexity 1 168 0 821 213 251 34 chr9 99211730 99212021 -18650606 + MLT1E LTR MaLR 232 585 -8 285 256 0 0 chr9 99212084 99212166 -18650461 + (TA)n Simple_repeat Simple_repeat 1 82 0 180 0 0 0 chr9 99212173 99212193 -18650434 + (TG)n Simple_repeat Simple_repeat 2 21 0 356 287 43 0 chr9 99212277 99212371 -18650256 - MIR SINE MIR -145 117 20 2499 148 32 2 chr9 99212814 99213247 -18649380 + L1MA4 LINE L1 5575 6020 -280 1105 303 65 34 chr9 99213737 99214301 -18648326 - L2 LINE L2 -24 3289 2697 933 211 46 0 chr9 99214301 99214495 -18648132 - MER58A DNA MER1_type -1 223 21 347 387 0 7 chr9 99214531 99214681 -18647946 - MIR3 SINE MIR -40 168 20 2158 125 0 3 chr9 99215291 99215603 -18647024 + AluSx SINE Alu 1 311 -1 242 333 52 0 chr9 99215620 99215716 -18646911 + MIR3 SINE MIR 76 176 -32 231 250 0 62 chr9 99216301 99216365 -18646262 + MIR SINE MIR 116 175 -87 539 241 70 21 chr9 99218154 99218341 -18644286 - MIR3 SINE MIR -5 203 8 272 273 117 10 chr9 99218411 99218570 -18644057 - MIR SINE MIR -27 181 19 516 304 117 14 chr9 99218789 99219003 -18643624 + MIR SINE MIR 22 257 -5 392 364 21 5 chr9 99219301 99219488 -18643139 - MIR3 SINE MIR -10 198 9 977 239 14 24 chr9 99219832 99220045 -18642582 + MER58A DNA MER1_type 11 221 -3 32 0 0 0 chr9 99220619 99220651 -18641976 + AT_rich Low_complexity Low_complexity 1 32 0 552 279 23 6 chr9 99220664 99220836 -18641791 + L3 LINE CR1 1353 1527 -50 422 215 12 29 chr9 99221366 99221538 -18641089 + CT-rich Low_complexity Low_complexity 4 172 0 293 236 180 0 chr9 99221668 99221757 -18640870 - MIR SINE MIR -48 214 110 2322 76 0 44 chr9 99221971 99222286 -18640341 + AluSg SINE Alu 1 301 -9 315 316 36 22 chr9 99222305 99222444 -18640183 + MIR3 SINE MIR 20 160 -48 195 107 0 0 chr9 99222873 99222901 -18639726 - MER5A DNA MER1_type -118 71 44 372 324 152 31 chr9 99222950 99223218 -18639409 + L2 LINE L2 2947 3254 -18 2656 48 0 3 chr9 99223218 99223528 -18639099 - AluY SINE Alu -2 309 1 372 324 152 31 chr9 99223528 99223549 -18639078 + L2 LINE L2 3254 3271 -1 331 313 9 18 chr9 99223945 99224057 -18638570 + L2 LINE L2 2623 2733 -581 2176 96 3 10 chr9 99224298 99224591 -18638036 - AluSg1 SINE Alu -18 291 1 1842 139 29 18 chr9 99224938 99225219 -18637408 + AluSx SINE Alu 1 284 -28 243 0 0 0 chr9 99225225 99225252 -18637375 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1328 115 0 34 chr9 99225346 99225554 -18637073 - L1PA15 LINE L1 -6 6159 5959 1585 318 122 24 chr9 99225583 99226002 -18636625 - L2 LINE L2 -45 3268 2891 2392 178 28 13 chr9 99226002 99226474 -18636153 - L1MA7 LINE L1 -11 6280 5802 1585 318 122 24 chr9 99226474 99226720 -18635907 - L2 LINE L2 -422 2891 2670 338 130 0 0 chr9 99226720 99226774 -18635853 - L1MA6 LINE L1 -6 6294 6241 1585 318 122 24 chr9 99226774 99226973 -18635654 - L2 LINE L2 -643 2670 2492 2105 109 0 3 chr9 99226973 99227298 -18635329 + AluSq SINE Alu 1 324 0 1585 318 122 24 chr9 99227298 99227577 -18635050 - L2 LINE L2 -821 2492 1997 2088 134 0 0 chr9 99227581 99227864 -18634763 + AluSx SINE Alu 1 283 -29 510 17 0 0 chr9 99227864 99227923 -18634704 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 495 282 127 87 chr9 99227969 99228441 -18634186 + L2 LINE L2 2813 3303 -10 315 306 92 13 chr9 99228557 99228735 -18633892 + MIR3 SINE MIR 9 196 -61 425 317 87 6 chr9 99229160 99229343 -18633284 - MIR SINE MIR -6 256 59 234 81 0 0 chr9 99229376 99229413 -18633214 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 1717 292 74 36 chr9 99229419 99230397 -18632230 - L2 LINE L2 -3 3310 2260 297 321 61 79 chr9 99230447 99230942 -18631685 - L2 LINE L2 0 3313 2828 279 258 16 121 chr9 99231185 99231375 -18631252 + L1MC4 LINE L1 7810 7979 -63 715 161 0 57 chr9 99231481 99231605 -18631022 - FLAM_C SINE Alu -10 133 17 21 0 0 0 chr9 99231670 99231691 -18630936 + AT_rich Low_complexity Low_complexity 1 21 0 2035 78 4 19 chr9 99231733 99232002 -18630625 - AluSx SINE Alu -46 266 2 526 290 43 19 chr9 99232781 99232943 -18629684 + MIR3 SINE MIR 36 201 -7 260 271 159 26 chr9 99233336 99233487 -18629140 - MIR SINE MIR -15 247 77 192 351 149 0 chr9 99233528 99233602 -18629025 + L2 LINE L2 3138 3222 -50 265 299 0 62 chr9 99234192 99234289 -18628338 + MIR SINE MIR 80 170 -92 232 185 28 0 chr9 99234328 99234382 -18628245 - MIR SINE MIR -52 156 99 212 154 26 26 chr9 99234469 99234547 -18628080 + (TA)n Simple_repeat Simple_repeat 1 78 0 440 234 87 49 chr9 99234559 99234743 -18627884 - MIR SINE MIR -56 206 16 263 323 40 65 chr9 99234962 99235086 -18627541 + L2 LINE L2 3144 3264 -8 308 358 7 13 chr9 99235555 99235706 -18626921 + CT-rich Low_complexity Low_complexity 2 151 0 393 356 48 21 chr9 99236056 99236393 -18626234 - L1MC4a LINE L1 -1899 5909 5564 1488 203 121 18 chr9 99236465 99236855 -18625772 - L1ME1 LINE L1 -15 6151 5722 510 298 86 0 chr9 99236962 99237113 -18625514 - MER63A DNA MER1_type 0 210 47 217 205 96 72 chr9 99237760 99237843 -18624784 + MIR3 SINE MIR 109 193 -15 2248 117 0 0 chr9 99238228 99238536 -18624091 + AluSc SINE Alu 1 308 -1 260 287 16 101 chr9 99238627 99238756 -18623871 - MIR SINE MIR -65 143 26 384 311 80 76 chr9 99238898 99239187 -18623440 + L2 LINE L2 2978 3267 -5 329 221 60 40 chr9 99239530 99239679 -18622948 + L1ME LINE L1 5600 5751 -370 2373 78 0 26 chr9 99239857 99240166 -18622461 - AluY SINE Alu -10 301 1 276 284 11 32 chr9 99241044 99241139 -18621488 + GA-rich Low_complexity Low_complexity 2 94 0 651 260 63 66 chr9 99241322 99241750 -18620877 - L1ME4a LINE L1 -169 5952 5501 360 285 23 81 chr9 99241928 99242100 -18620527 + MIR3 SINE MIR 37 198 -10 220 336 10 19 chr9 99242102 99242206 -18620421 + GA-rich Low_complexity Low_complexity 5 107 0 212 300 63 95 chr9 99242677 99242831 -18619796 + MIR3 SINE MIR 5 153 -55 737 156 43 147 chr9 99242831 99243042 -18619585 + MER5A DNA MER1_type 1 189 0 212 300 63 95 chr9 99243042 99243077 -18619550 + MIR3 SINE MIR 153 188 -20 2205 90 7 14 chr9 99243166 99243455 -18619172 - AluSx SINE Alu -25 287 1 273 273 156 65 chr9 99243551 99243705 -18618922 + MER5A DNA MER1_type 13 180 -9 255 248 183 20 chr9 99243975 99244128 -18618499 + MIR SINE MIR 20 197 -65 180 0 0 0 chr9 99244824 99244844 -18617783 + (A)n Simple_repeat Simple_repeat 1 20 0 484 238 0 40 chr9 99245064 99245190 -18617437 - MIR SINE MIR -114 148 28 225 295 0 21 chr9 99245608 99245703 -18616924 + (CAT)n Simple_repeat Simple_repeat 3 95 0 2364 71 0 7 chr9 99245861 99246156 -18616471 - AluY SINE Alu -18 293 1 348 315 28 34 chr9 99246955 99247133 -18615494 + MIR SINE MIR 25 201 -61 252 299 32 39 chr9 99247292 99247446 -18615181 - Charlie8 DNA MER1_type -2162 255 103 1167 70 32 6 chr9 99247468 99247625 -18615002 + L1PA13 LINE L1 6001 6161 -2 21 36 0 0 chr9 99247955 99247983 -18614644 + AT_rich Low_complexity Low_complexity 1 28 0 275 289 19 39 chr9 99248257 99248361 -18614266 + L2 LINE L2 3166 3267 -5 201 45 45 23 chr9 99248386 99248430 -18614197 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 2110 93 3 31 chr9 99248432 99248722 -18613905 - AluSq SINE Alu -31 282 1 315 268 102 16 chr9 99249509 99249636 -18612991 + L2 LINE L2 2578 2715 -599 302 320 47 23 chr9 99249712 99249840 -18612787 + L1ME LINE L1 80 210 -5860 186 224 0 61 chr9 99249941 99249990 -18612637 + MIR SINE MIR 216 261 -1 230 362 107 18 chr9 99250083 99250307 -18612320 - L2 LINE L2 -896 2418 2175 264 335 30 67 chr9 99250451 99250465 -18612162 - MER91A DNA MER1_type -36 160 147 2429 75 3 7 chr9 99250465 99250772 -18611855 + AluSq SINE Alu 3 308 -5 264 335 30 67 chr9 99250772 99250921 -18611706 - MER91A DNA MER1_type -49 147 3 230 265 122 68 chr9 99251021 99251168 -18611459 - L3 LINE CR1 -120 1457 1303 555 340 11 0 chr9 99251688 99251879 -18610748 - MIR3 SINE MIR -3 205 13 366 308 17 25 chr9 99252591 99252711 -18609916 - L2 LINE L2 -9 3304 3186 303 289 39 32 chr9 99253173 99253319 -18609308 + MIR SINE MIR 40 185 -63 240 224 0 30 chr9 99253348 99253415 -18609212 + GA-rich Low_complexity Low_complexity 1 65 0 2509 173 42 86 chr9 99253436 99253871 -18608756 + L1MA9 LINE L1 4048 4501 -1645 1920 138 18 3 chr9 99253871 99254154 -18608473 + AluSx SINE Alu 1 287 -25 2509 173 42 86 chr9 99254154 99254206 -18608421 + L1MA9 LINE L1 4501 4554 -1592 2048 128 42 0 chr9 99254206 99254494 -18608133 + AluSx SINE Alu 1 300 -12 2509 173 42 86 chr9 99254494 99254734 -18607893 + L1MA9 LINE L1 4554 4744 -1402 45 0 0 0 chr9 99254762 99254807 -18607820 + AT_rich Low_complexity Low_complexity 1 45 0 666 176 0 9 chr9 99254824 99254932 -18607695 - AluJo SINE Alu -171 141 35 2068 177 3 0 chr9 99254932 99255260 -18607367 - MER7A DNA MER2_type -19 327 1 5787 168 26 13 chr9 99255261 99256810 -18605817 + L1MA9 LINE L1 4742 6311 -1 284 301 64 58 chr9 99256814 99256987 -18605640 - MIR3 SINE MIR -23 185 12 770 204 56 37 chr9 99256992 99257208 -18605419 + MIR SINE MIR 4 223 -39 187 30 30 30 chr9 99257437 99257470 -18605157 + (TAA)n Simple_repeat Simple_repeat 1 33 0 232 327 182 27 chr9 99258096 99258509 -18604118 + L2 LINE L2 558 1034 -2280 3566 127 19 62 chr9 99258557 99258954 -18603673 - L1MA8 LINE L1 -2 6289 5929 2381 77 7 0 chr9 99258954 99259254 -18603373 + AluSp SINE Alu 1 302 -11 3566 127 19 62 chr9 99259254 99259496 -18603131 - L1MA8 LINE L1 -362 5929 5678 1527 131 34 8 chr9 99259875 99260142 -18602485 + L1MA2 LINE L1 6029 6302 -2 27 0 0 0 chr9 99260146 99260173 -18602454 + AT_rich Low_complexity Low_complexity 1 27 0 462 318 189 50 chr9 99260265 99260922 -18601705 + L2 LINE L2 1752 2499 -815 1469 222 142 20 chr9 99261049 99261450 -18601177 + L1MD2 LINE L1 5910 6359 0 308 298 117 18 chr9 99261456 99261627 -18601000 + L2 LINE L2 2555 2742 -572 1674 244 109 26 chr9 99261653 99262186 -18600441 + MER119 DNA MER1_type 3 579 -4 346 265 104 62 chr9 99262425 99262636 -18599991 + L2 LINE L2 3091 3310 -3 381 22 0 0 chr9 99262901 99262947 -18599680 + (CA)n Simple_repeat Simple_repeat 1 46 0 612 292 72 24 chr9 99263461 99263490 -18599137 - MIR SINE MIR -21 241 215 2285 115 0 6 chr9 99263490 99263802 -18598825 - AluSx SINE Alu -2 310 1 612 292 72 24 chr9 99263802 99263981 -18598646 - MIR SINE MIR -47 215 23 339 213 11 149 chr9 99264756 99264944 -18597683 - MER112 DNA MER1_type -96 164 3 299 256 60 159 chr9 99265135 99265538 -18597089 + L2 LINE L2 2910 3272 0 785 201 18 87 chr9 99266647 99266876 -18595751 - MER20 DNA MER1_type 0 219 7 395 238 48 0 chr9 99266900 99266984 -18595643 + MER5B DNA MER1_type 75 162 -16 221 265 0 44 chr9 99267603 99267671 -18594956 + MIR SINE MIR 133 197 -65 283 283 133 26 chr9 99268016 99268129 -18594498 + L2 LINE L2 3145 3269 -3 320 246 47 69 chr9 99268773 99268948 -18593679 - MIR SINE MIR -46 216 48 550 248 106 25 chr9 99268958 99269156 -18593471 + MIR SINE MIR 6 219 -43 181 173 39 58 chr9 99269272 99269324 -18593303 - MIR SINE MIR -92 170 120 612 307 35 20 chr9 99269703 99269905 -18592722 - MIR3 SINE MIR -3 205 1 273 369 0 33 chr9 99270737 99270859 -18591768 + L2 LINE L2 3154 3271 -1 304 395 16 0 chr9 99271206 99271335 -18591292 - MIR3 SINE MIR -48 160 30 310 335 70 15 chr9 99271478 99271647 -18590980 + MIR SINE MIR 5 188 -67 603 323 5 14 chr9 99272348 99272571 -18590056 + MIR SINE MIR 39 259 -3 314 253 30 10 chr9 99273032 99273131 -18589496 + GA-rich Low_complexity Low_complexity 2 102 0 205 280 0 0 chr9 99273357 99273407 -18589220 + L2 LINE L2 3264 3313 0 1753 140 0 0 chr9 99273982 99274239 -18588388 - AluSg SINE Alu -6 304 48 463 258 83 7 chr9 99274364 99274511 -18588116 + MIR SINE MIR 94 251 -11 21 0 0 0 chr9 99274668 99274689 -18587938 + AT_rich Low_complexity Low_complexity 1 21 0 15132 144 30 10 chr9 99274772 99275710 -18586917 + Tigger1 DNA MER2_type 1 918 -1500 2160 120 0 3 chr9 99275710 99276010 -18586617 - AluSx SINE Alu -13 299 1 15132 144 30 10 chr9 99276010 99276493 -18586134 + Tigger1 DNA MER2_type 918 1390 -1028 1861 108 0 0 chr9 99276493 99276742 -18585885 + AluSc SINE Alu 61 309 0 15132 144 30 10 chr9 99276742 99277689 -18584938 + Tigger1 DNA MER2_type 1390 2418 0 191 286 20 0 chr9 99277773 99277822 -18584805 + MIR SINE MIR 81 130 -78 369 0 0 0 chr9 99278467 99278508 -18584119 + (TG)n Simple_repeat Simple_repeat 1 41 0 867 166 45 0 chr9 99278601 99278758 -18583869 + MER20 DNA MER1_type 56 219 0 283 382 42 7 chr9 99279319 99279463 -18583164 - MIR SINE MIR -90 172 24 644 328 91 23 chr9 99279990 99280332 -18582295 - L2 LINE L2 0 3313 2949 443 265 47 85 chr9 99280451 99280555 -18582072 - MIR SINE MIR -6 256 162 2545 44 0 3 chr9 99280555 99280853 -18581774 - AluY SINE Alu -14 297 1 443 265 47 85 chr9 99280853 99280959 -18581668 - MIR SINE MIR -100 162 54 987 190 146 58 chr9 99280961 99281102 -18581525 + MER33 DNA MER1_type 1 128 -2457 1331 160 138 7 chr9 99281102 99281377 -18581250 - AluJb SINE Alu -1 311 1 987 190 146 58 chr9 99281377 99281530 -18581097 + MER33 DNA MER1_type 128 321 -3 200 258 61 0 chr9 99282330 99282396 -18580231 + L2 LINE L2 2209 2278 -1036 478 170 0 50 chr9 99282402 99282502 -18580125 + MIR SINE MIR 79 173 -89 788 221 194 46 chr9 99283923 99284335 -18578292 + Charlie7 DNA MER1_type 219 691 -1921 2302 109 7 0 chr9 99284440 99284742 -18577885 + AluSp SINE Alu 1 304 -9 275 71 24 0 chr9 99284742 99284784 -18577843 + (GA)n Simple_repeat Simple_repeat 1 43 0 300 304 115 16 chr9 99284839 99285030 -18577597 + L2 LINE L2 2282 2491 -823 283 351 33 49 chr9 99285650 99285895 -18576732 - MIR SINE MIR -15 247 7 316 299 83 80 chr9 99286367 99286692 -18575935 - L2 LINE L2 -111 3161 2836 1356 132 29 0 chr9 99286768 99286973 -18575654 - L1PA10 LINE L1 -2 6166 5956 255 305 105 11 chr9 99286973 99287068 -18575559 + L2 LINE L2 3209 3312 -1 682 343 82 39 chr9 99287291 99288087 -18574540 - L2 LINE L2 -787 2527 1698 1990 143 0 3 chr9 99290368 99290661 -18571966 + AluSg SINE Alu 1 292 -18 367 351 16 32 chr9 99291404 99291589 -18571038 + MER5A DNA MER1_type 7 188 -1 281 333 12 0 chr9 99291925 99292009 -18570618 - MIR SINE MIR -19 243 159 890 276 102 23 chr9 99292010 99292492 -18570135 + MLT1H LTR MaLR 1 520 -29 540 261 51 25 chr9 99292546 99292703 -18569924 - MIR SINE MIR -101 161 1 2043 150 0 7 chr9 99292801 99293107 -18569520 + AluJb SINE Alu 1 304 -8 21 0 0 0 chr9 99293131 99293152 -18569475 + AT_rich Low_complexity Low_complexity 1 21 0 286 268 61 12 chr9 99293152 99293234 -18569393 + MER5A DNA MER1_type 82 167 -22 317 343 28 28 chr9 99294185 99294328 -18568299 + MIR3 SINE MIR 38 180 -28 582 291 42 26 chr9 99294851 99295040 -18567587 + MIR3 SINE MIR 6 197 -11 203 308 0 0 chr9 99295319 99295371 -18567256 - L2 LINE L2 -4 3268 3217 313 299 142 24 chr9 99295794 99295921 -18566706 - MIR3 SINE MIR -31 177 36 292 242 128 97 chr9 99296845 99297072 -18565555 - MER102a DNA MER1_type 0 330 97 404 241 16 120 chr9 99297516 99297707 -18564920 + MIR3 SINE MIR 2 172 -36 219 88 0 0 chr9 99297846 99297880 -18564747 + (TTTTTG)n Simple_repeat Simple_repeat 4 37 0 183 224 0 61 chr9 99297934 99297983 -18564644 - L2 LINE L2 -18 3254 3209 206 316 25 25 chr9 99298116 99298195 -18564432 + MIR3 SINE MIR 95 173 -35 2168 56 31 72 chr9 99298213 99298532 -18564095 + AluY SINE Alu 1 306 -5 189 214 0 0 chr9 99298560 99298602 -18564025 + GA-rich Low_complexity Low_complexity 2 43 0 1207 216 0 0 chr9 99298742 99298950 -18563677 - MER58A DNA MER1_type -16 208 1 613 262 19 37 chr9 99298959 99299173 -18563454 + L2 LINE L2 3104 3313 0 394 192 27 0 chr9 99299296 99299369 -18563258 - MIR SINE MIR -109 153 79 471 246 24 8 chr9 99300910 99301036 -18561591 - MER113 DNA MER1_type? -80 441 314 1677 178 210 9 chr9 99301037 99301385 -18561242 + MER47B DNA MER2_type 1 418 0 2114 108 0 14 chr9 99301402 99301690 -18560937 - AluSx SINE Alu -28 284 1 658 257 54 76 chr9 99301698 99302013 -18560614 - MER113 DNA MER1_type? -213 308 1 242 355 24 8 chr9 99302091 99302215 -18560412 + MIR SINE MIR 19 144 -118 605 276 38 49 chr9 99302461 99302725 -18559902 + MIR SINE MIR 2 262 0 208 406 12 0 chr9 99303394 99303559 -18559068 + L2 LINE L2 2841 3007 -265 382 331 71 24 chr9 99303679 99303924 -18558703 + MIR SINE MIR 2 262 0 227 388 25 0 chr9 99304012 99304092 -18558535 + L2 LINE L2 3141 3222 -50 375 273 18 18 chr9 99305276 99305386 -18557241 - MIR3 SINE MIR -91 117 8 695 264 78 74 chr9 99305407 99305665 -18556962 - MIR SINE MIR -1 261 3 254 287 134 59 chr9 99306897 99307099 -18555528 + MIR SINE MIR 16 232 -30 4780 160 60 0 chr9 99307430 99308247 -18554380 - L1MC1 LINE L1 0 6333 5468 236 295 80 36 chr9 99308372 99308484 -18554143 + L2 LINE L2 3156 3272 0 277 241 355 12 chr9 99308546 99308712 -18553915 - MIR3 SINE MIR -21 241 19 226 263 167 44 chr9 99309394 99309508 -18553119 + MIR3 SINE MIR 4 131 -77 325 305 43 28 chr9 99309835 99309976 -18552651 - MER5B DNA MER1_type 0 178 36 1833 84 0 8 chr9 99310525 99310762 -18551865 - L1PA8 LINE L1 -3 6169 5935 198 238 32 63 chr9 99311239 99311302 -18551325 - L2 LINE L2 -78 3194 3134 1935 137 65 0 chr9 99311427 99311720 -18550907 - AluSx SINE Alu 0 312 1 1889 120 98 0 chr9 99312055 99312329 -18550298 - AluSx SINE Alu -11 301 1 369 281 35 18 chr9 99312740 99312854 -18549773 + L2 LINE L2 3192 3307 -6 266 329 0 0 chr9 99312875 99312954 -18549673 + CT-rich Low_complexity Low_complexity 1 79 0 498 270 70 11 chr9 99312988 99313173 -18549454 - MIR SINE MIR -62 200 5 297 0 0 0 chr9 99313445 99313478 -18549149 + (T)n Simple_repeat Simple_repeat 1 33 0 1860 149 0 30 chr9 99314200 99314501 -18548126 + AluJo SINE Alu 1 292 -20 336 281 33 25 chr9 99314941 99315062 -18547565 - MIR SINE MIR -12 250 129 2515 63 0 3 chr9 99315069 99315368 -18547259 + AluY SINE Alu 1 298 -13 212 220 0 68 chr9 99315606 99315665 -18546962 + (CAGAGA)n Simple_repeat Simple_repeat 6 60 0 1231 286 62 27 chr9 99315691 99316142 -18546485 + L2 LINE L2 2835 3301 -12 2321 99 0 7 chr9 99316143 99316446 -18546181 + AluSx SINE Alu 1 301 -11 243 298 111 48 chr9 99316474 99316682 -18545945 - L1P5 LINE L1 -583 5573 5353 434 302 60 0 chr9 99317610 99317759 -18544868 + MIR SINE MIR 48 205 -57 24 32 0 0 chr9 99317998 99318029 -18544598 + AT_rich Low_complexity Low_complexity 1 31 0 2121 113 3 3 chr9 99318036 99318329 -18544298 + AluSx SINE Alu 3 295 -17 597 254 18 127 chr9 99318710 99318829 -18543798 - MIR SINE MIR 0 262 188 1621 176 0 28 chr9 99318829 99319119 -18543508 - AluJo SINE Alu -25 287 6 597 254 18 127 chr9 99319119 99319274 -18543353 - MIR SINE MIR -74 188 18 299 302 25 27 chr9 99319273 99319439 -18543188 + MIR SINE MIR 38 201 -61 * 1118 171 0 11 chr9 99321231 99321418 -18541209 - AluJb SINE Alu 0 312 128 2284 75 3 53 chr9 99321420 99321740 -18540887 - AluSg SINE Alu -6 304 1 257 293 112 17 chr9 99321797 99321913 -18540714 - MIR SINE MIR -59 149 23 809 305 52 85 chr9 99322587 99322724 -18539903 + L2 LINE L2 2809 2949 -364 1421 170 43 50 chr9 99322724 99323024 -18539603 - AluJo SINE Alu -14 298 1 809 305 52 85 chr9 99323024 99323346 -18539281 + L2 LINE L2 2949 3252 -61 1109 181 19 29 chr9 99323346 99323556 -18539071 - MER3 DNA MER1_type 0 209 2 809 305 52 85 chr9 99323556 99323613 -18539014 + L2 LINE L2 3252 3309 -4 180 0 0 0 chr9 99323641 99323661 -18538966 + (T)n Simple_repeat Simple_repeat 1 20 0 474 305 151 4 chr9 99323786 99324045 -18538582 + L3 LINE CR1 1216 1512 -65 337 315 98 10 chr9 99324220 99324417 -18538210 + MIR SINE MIR 8 218 -44 185 383 78 35 chr9 99324618 99324874 -18537753 - L2 LINE L2 -14 3258 2992 522 0 0 0 chr9 99326126 99326184 -18536443 + (TG)n Simple_repeat Simple_repeat 2 59 0 288 339 8 25 chr9 99326384 99326502 -18536125 + MIR3 SINE MIR 15 130 -78 216 0 0 0 chr9 99326816 99326840 -18535787 + (TG)n Simple_repeat Simple_repeat 1 24 0 198 0 0 0 chr9 99326844 99326866 -18535761 + (TA)n Simple_repeat Simple_repeat 2 23 0 321 145 0 0 chr9 99327438 99327500 -18535127 + (TC)n Simple_repeat Simple_repeat 2 63 0 223 255 0 0 chr9 99328227 99328278 -18534349 + (CA)n Simple_repeat Simple_repeat 2 52 0 253 167 28 28 chr9 99328326 99328398 -18534229 + (CA)n Simple_repeat Simple_repeat 2 73 0 270 203 0 27 chr9 99328921 99328995 -18533632 + (CTCG)n Simple_repeat Simple_repeat 2 73 0 497 196 36 36 chr9 99330067 99330205 -18532422 + MIR SINE MIR 78 215 -47 297 239 0 15 chr9 99330211 99330278 -18532349 + MIR SINE MIR 188 253 -9 262 241 35 11 chr9 99330876 99330963 -18531664 + CT-rich Low_complexity Low_complexity 1 89 0 258 299 64 107 chr9 99331297 99331531 -18531096 - MIR SINE MIR -18 244 21 192 276 82 31 chr9 99332083 99332181 -18530446 + L3b LINE CR1 1283 1385 -198 203 200 67 0 chr9 99333107 99333167 -18529460 - MIR SINE MIR -1 261 198 1268 149 56 152 chr9 99333215 99333538 -18529089 + AluJb SINE Alu 1 292 -10 373 172 10 10 chr9 99333554 99333653 -18528974 + CT-rich Low_complexity Low_complexity 2 100 0 325 287 256 30 chr9 99333956 99334347 -18528280 + L2 LINE L2 2632 3109 -163 676 265 63 45 chr9 99334501 99334724 -18527903 - MIR SINE MIR -29 233 7 195 42 0 0 chr9 99335341 99335365 -18527262 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 914 287 46 39 chr9 99335714 99336214 -18526413 + MLT1K LTR MaLR 20 580 -8 188 333 51 60 chr9 99336270 99336387 -18526240 + MIR3 SINE MIR 5 120 -88 1038 246 98 27 chr9 99336403 99336986 -18525641 + MLT1E3 LTR MaLR 1 624 0 212 232 145 14 chr9 99337669 99337738 -18524889 + MIR SINE MIR 151 228 -34 435 239 69 15 chr9 99337801 99337931 -18524696 - MIR SINE MIR -2 260 124 185 0 0 39 chr9 99338347 99338373 -18524254 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 2290 103 3 6 chr9 99338381 99338692 -18523935 + AluSp SINE Alu 1 310 -3 231 36 0 0 chr9 99338722 99338750 -18523877 + (A)n Simple_repeat Simple_repeat 1 28 0 22 88 0 0 chr9 99338949 99339006 -18523621 + AT_rich Low_complexity Low_complexity 1 57 0 2262 104 0 0 chr9 99339688 99339976 -18522651 + AluSg SINE Alu 1 288 -22 591 227 114 73 chr9 99340119 99340339 -18522288 - MLT1K LTR MaLR 0 588 360 187 231 143 44 chr9 99340761 99340852 -18521775 + MIR SINE MIR 77 176 -86 1306 251 102 42 chr9 99341369 99341799 -18520828 + MLT2B1 LTR ERVL 3 466 -54 195 42 0 0 chr9 99341799 99341823 -18520804 + (TCTA)n Simple_repeat Simple_repeat 3 26 0 1306 251 102 42 chr9 99341823 99341871 -18520756 + MLT2B1 LTR ERVL 466 510 -10 192 337 174 0 chr9 99341877 99341963 -18520664 + MIR3 SINE MIR 88 188 -20 276 292 119 69 chr9 99342343 99342545 -18520082 + MIR SINE MIR 19 230 -32 195 379 0 0 chr9 99342666 99342732 -18519895 + L2 LINE L2 3207 3272 0 1082 201 29 0 chr9 99344442 99344686 -18517941 + MER33 DNA MER1_type 17 267 -57 21 36 0 0 chr9 99345694 99345722 -18516905 + AT_rich Low_complexity Low_complexity 1 28 0 2377 78 10 0 chr9 99345771 99346065 -18516562 - AluSc SINE Alu -12 297 1 22 35 0 0 chr9 99346366 99346395 -18516232 + AT_rich Low_complexity Low_complexity 1 29 0 245 257 29 48 chr9 99346402 99346507 -18516120 + Charlie7 DNA MER1_type 2 104 -2508 21 36 0 0 chr9 99347063 99347091 -18515536 + AT_rich Low_complexity Low_complexity 1 28 0 2667 324 68 11 chr9 99347430 99347937 -18514690 + L1ME1 LINE L1 190 667 -5729 195 69 0 0 chr9 99347937 99347966 -18514661 + (TATAG)n Simple_repeat Simple_repeat 4 32 0 2667 324 68 11 chr9 99347966 99348963 -18513664 + L1ME1 LINE L1 667 1780 -4616 1278 226 70 8 chr9 99349006 99349492 -18513135 + L1ME1 LINE L1 2822 3337 -2878 262 158 35 35 chr9 99349504 99349561 -18513066 - MER77 LTR ERV1 -467 138 82 3437 241 50 46 chr9 99349599 99351928 -18510699 + L1ME1 LINE L1 3900 6230 -5 310 289 9 18 chr9 99351942 99352056 -18510571 + L1ME4a LINE L1 5942 6054 -67 219 379 0 0 chr9 99352102 99352168 -18510459 - L2 LINE L2 -39 3233 3168 23 33 0 0 chr9 99352490 99352520 -18510107 + AT_rich Low_complexity Low_complexity 1 30 0 205 329 0 0 chr9 99352646 99352719 -18509908 - MIR3 SINE MIR -3 205 133 324 316 52 0 chr9 99352961 99353097 -18509530 - MER117 DNA MER1_type -41 156 14 252 267 57 19 chr9 99353166 99353271 -18509356 + MIR SINE MIR 95 203 -59 453 265 20 60 chr9 99355348 99355499 -18507128 + MIR SINE MIR 42 186 -76 379 240 10 0 chr9 99355610 99355710 -18506917 + Charlie5 DNA MER1_type 5 105 -2507 1004 168 61 0 chr9 99355713 99355909 -18506718 + MER2 DNA MER2_type 1 208 -137 26 30 0 0 chr9 99355929 99355962 -18506665 + AT_rich Low_complexity Low_complexity 1 33 0 1130 191 39 50 chr9 99355994 99356376 -18506251 + Charlie5 DNA MER1_type 2243 2620 0 1906 146 10 10 chr9 99357083 99357378 -18505249 + AluJb SINE Alu 5 299 -13 200 291 13 63 chr9 99357589 99357668 -18504959 - L2 LINE L2 -234 3038 2964 222 310 58 23 chr9 99357999 99358086 -18504541 + MIR3 SINE MIR 4 93 -115 299 218 0 0 chr9 99358090 99358145 -18504482 - L2 LINE L2 -10 3262 3208 207 211 18 35 chr9 99358335 99358392 -18504235 - L2 LINE L2 -1 3312 3257 244 170 21 0 chr9 99358393 99358440 -18504187 + MER3 DNA MER1_type 39 86 -123 * 1155 203 22 16 chr9 99358408 99358719 -18503908 + MER33 DNA MER1_type 7 319 -5 412 255 56 37 chr9 99358983 99359144 -18503483 + MIR3 SINE MIR 34 197 -11 1298 180 45 0 chr9 99359188 99359410 -18503217 + AluSg/x SINE Alu 66 297 -13 198 0 0 0 chr9 99359911 99359933 -18502694 + (TG)n Simple_repeat Simple_repeat 1 22 0 242 314 128 0 chr9 99360258 99360344 -18502283 + MIR3 SINE MIR 85 181 -27 188 196 0 65 chr9 99360349 99360395 -18502232 + MER5B DNA MER1_type 10 52 -126 522 157 17 0 chr9 99360632 99360747 -18501880 - Charlie5 DNA MER1_type -40 2572 2456 1034 201 57 4 chr9 99360769 99361049 -18501578 - MER33 DNA MER1_type -36 288 1 514 269 161 13 chr9 99361060 99361209 -18501418 + MER5A DNA MER1_type 13 183 -6 185 300 0 17 chr9 99361213 99361273 -18501354 + L2 LINE L2 2575 2633 -681 396 350 60 70 chr9 99361340 99361737 -18500890 + L2 LINE L2 2871 3263 -9 227 196 0 20 chr9 99361745 99361796 -18500831 + GA-rich Low_complexity Low_complexity 4 53 0 324 331 62 17 chr9 99361920 99362098 -18500529 + MIR SINE MIR 25 210 -52 234 299 64 117 chr9 99363092 99363210 -18499417 - L2 LINE L2 -14 3299 3176 927 191 83 10 chr9 99363210 99363414 -18499213 - MER20 DNA MER1_type 0 219 1 234 299 64 117 chr9 99363414 99363810 -18498817 - L2 LINE L2 -137 3176 2812 198 365 0 11 chr9 99364285 99364397 -18498230 - MIR SINE MIR -69 139 29 233 298 74 60 chr9 99364617 99364832 -18497795 + L2 LINE L2 2837 3054 -218 1917 156 0 0 chr9 99366238 99366520 -18496107 - AluSx SINE Alu -30 282 1 385 308 30 15 chr9 99366520 99366653 -18495974 + L2 LINE L2 3171 3305 -8 1196 83 56 0 chr9 99366729 99366909 -18495718 - L1PA13 LINE L1 0 6163 5974 920 234 75 4 chr9 99366950 99367177 -18495450 + MIR SINE MIR 19 261 -1 203 397 82 14 chr9 99367911 99368057 -18494570 - L2 LINE L2 0 3272 3117 510 279 33 87 chr9 99368184 99368460 -18494167 - MIR SINE MIR 0 262 2 452 321 91 31 chr9 99370364 99370543 -18492084 - L3 LINE CR1 -29 1548 1344 2256 114 0 3 chr9 99370543 99370850 -18491777 - AluSx SINE Alu -6 306 1 452 321 91 31 chr9 99370850 99370957 -18491670 - L3 LINE CR1 -233 1344 1245 1697 215 34 0 chr9 99371091 99371444 -18491183 + MLT1A1 LTR MaLR 1 365 0 819 223 86 37 chr9 99371510 99371779 -18490848 + MLT2C1 LTR ERVL 1 282 -115 220 200 0 0 chr9 99371802 99371842 -18490785 + (TG)n Simple_repeat Simple_repeat 2 41 0 407 200 34 131 chr9 99372611 99372786 -18489841 + MIR SINE MIR 105 262 0 2303 141 36 14 chr9 99372926 99373219 -18489408 - MSTA LTR MaLR 0 428 122 3340 74 22 11 chr9 99373219 99373667 -18488960 + MLT2A2 LTR ERVL 1 453 0 2303 141 36 14 chr9 99373667 99373792 -18488835 - MSTA LTR MaLR -306 122 1 960 308 45 0 chr9 99373875 99374122 -18488505 + MIR SINE MIR 2 259 -3 505 316 16 32 chr9 99374679 99374866 -18487761 - MIR SINE MIR -17 245 62 919 235 38 88 chr9 99374908 99375304 -18487323 - L1ME3A LINE L1 0 6170 5795 846 216 74 13 chr9 99375531 99375762 -18486865 - L1MB1 LINE L1 -6 6162 5918 249 129 113 16 chr9 99376619 99376681 -18485946 - MIR SINE MIR -63 145 78 944 79 0 0 chr9 99377245 99377372 -18485255 - AluY SINE Alu -2 309 183 957 242 27 9 chr9 99377592 99377811 -18484816 - MER58A DNA MER1_type 0 224 2 803 273 74 47 chr9 99378054 99378526 -18484101 - MLT1L LTR MaLR -8 607 123 474 305 26 13 chr9 99378755 99378906 -18483721 - MER5A DNA MER1_type 0 189 37 183 353 40 50 chr9 99379258 99379459 -18483168 + MIR SINE MIR 56 254 -8 243 308 111 8 chr9 99379541 99379658 -18482969 - MIR3 SINE MIR -43 165 37 351 121 0 0 chr9 99379795 99379853 -18482774 + (TC)n Simple_repeat Simple_repeat 1 58 0 249 369 12 0 chr9 99380583 99380667 -18481960 - L2 LINE L2 -37 3235 3151 663 289 88 13 chr9 99381164 99381392 -18481235 + MIR SINE MIR 18 262 0 542 350 47 16 chr9 99381600 99381857 -18480770 + L3 LINE CR1 1214 1478 -99 568 265 47 6 chr9 99382170 99382340 -18480287 + MIR3 SINE MIR 30 206 -2 2544 138 14 9 chr9 99383374 99383815 -18478812 - Tigger2 DNA MER2_type -3 2715 2273 261 165 24 106 chr9 99383792 99383877 -18478750 - Tigger2 DNA MER2_type -2640 78 1 * 464 332 37 37 chr9 99384172 99384416 -18478211 + MIR SINE MIR 3 246 -16 24 32 0 0 chr9 99384753 99384784 -18477843 + AT_rich Low_complexity Low_complexity 1 31 0 851 154 6 29 chr9 99384784 99384959 -18477668 - L1MB8 LINE L1 -12 6166 5996 3101 197 57 9 chr9 99384964 99386009 -18476618 - L1MB8 LINE L1 -588 5596 4497 311 363 7 7 chr9 99386081 99386216 -18476411 + L2 LINE L2 3171 3305 -8 23 33 0 0 chr9 99386781 99386811 -18475816 + AT_rich Low_complexity Low_complexity 1 30 0 6489 112 13 1 chr9 99386819 99388612 -18474015 + L1PA8 LINE L1 4369 6172 0 23 0 0 0 chr9 99388985 99389008 -18473619 + AT_rich Low_complexity Low_complexity 1 23 0 232 365 17 94 chr9 99389794 99389975 -18472652 - MIR3 SINE MIR -14 194 28 194 361 42 25 chr9 99390009 99390128 -18472499 - L2 LINE L2 -15 3257 3137 446 322 28 17 chr9 99390928 99391288 -18471339 + L1MC/D LINE L1 4179 4542 -1604 1351 179 0 0 chr9 99391577 99391795 -18470832 - AluSg/x SINE Alu -10 300 83 23 54 0 0 chr9 99391982 99392019 -18470608 + AT_rich Low_complexity Low_complexity 1 37 0 376 232 75 33 chr9 99392182 99392466 -18470161 + L1MC/D LINE L1 5311 5605 -557 2225 118 0 16 chr9 99392504 99392809 -18469818 + AluSx SINE Alu 1 300 -12 619 258 87 23 chr9 99393025 99393289 -18469338 - L1MB7 LINE L1 -8 6176 5896 787 241 6 6 chr9 99394444 99394614 -18468013 - MER5B DNA MER1_type -7 171 2 333 325 31 26 chr9 99394834 99395025 -18467602 + MER117 DNA MER1_type 1 192 -5 762 192 114 12 chr9 99395265 99395432 -18467195 - MER5A DNA MER1_type -3 186 3 417 308 63 6 chr9 99396881 99397040 -18465587 - MIR SINE MIR -50 212 45 858 311 76 30 chr9 99397068 99397124 -18465503 + LTR33 LTR ERVL 38 90 -431 1653 236 66 29 chr9 99397124 99397611 -18465016 - MLT1D LTR MaLR 0 505 1 858 311 76 30 chr9 99397611 99398014 -18464613 + LTR33 LTR ERVL 90 518 -3 922 311 74 20 chr9 99398348 99398901 -18463726 + L2 LINE L2 2712 3307 -6 776 259 26 53 chr9 99398900 99399166 -18463461 - MIR SINE MIR -1 261 3 * 2418 101 0 0 chr9 99399398 99399704 -18462923 - AluSq SINE Alu -7 306 1 183 250 26 26 chr9 99400183 99400259 -18462368 + L2 LINE L2 2918 2993 -279 180 77 0 0 chr9 99400583 99400609 -18462018 + (TAA)n Simple_repeat Simple_repeat 2 27 0 554 226 14 0 chr9 99401121 99401267 -18461360 + MER103 DNA DNA 8 155 -11 21 0 0 0 chr9 99401339 99401360 -18461267 + AT_rich Low_complexity Low_complexity 1 21 0 363 268 0 10 chr9 99401398 99401495 -18461132 + MIR SINE MIR 118 213 -49 469 270 135 27 chr9 99401564 99401786 -18460841 + MIR SINE MIR 13 258 -4 * 530 319 52 20 chr9 99401784 99402035 -18460592 - MIR SINE MIR -1 261 3 213 363 38 0 chr9 99402581 99402661 -18459966 - MIR SINE MIR -160 102 20 391 340 77 24 chr9 99403110 99403319 -18459308 - MIR SINE MIR -16 246 27 273 219 0 0 chr9 99403566 99403639 -18458988 + (CATATA)n Simple_repeat Simple_repeat 6 78 0 438 337 44 19 chr9 99404012 99404217 -18458410 - L2 LINE L2 -618 2696 2487 285 411 30 5 chr9 99404267 99404464 -18458163 + L3 LINE CR1 1297 1498 -79 829 277 75 5 chr9 99404552 99404765 -18457862 - MIR SINE MIR -1 261 34 386 152 0 25 chr9 99404827 99404906 -18457721 + C-rich Low_complexity Low_complexity 2 78 0 767 100 0 8 chr9 99404869 99404989 -18457638 + (TTTCC)n Simple_repeat Simple_repeat 4 122 0 1862 150 3 18 chr9 99404989 99405275 -18457352 - AluSx SINE Alu -30 282 1 203 232 161 0 chr9 99405580 99405636 -18456991 + L3 LINE CR1 1512 1576 -1 246 263 40 0 chr9 99406599 99406675 -18455952 - MIR SINE MIR -74 188 110 310 342 118 13 chr9 99407011 99407163 -18455464 - MIR SINE MIR -7 255 88 944 174 40 62 chr9 99408314 99408538 -18454089 + MER20 DNA MER1_type 1 219 0 329 260 153 62 chr9 99408544 99408721 -18453906 + MIR SINE MIR 37 229 -33 1369 214 36 28 chr9 99408724 99409083 -18453544 + MLT1A1 LTR MaLR 4 365 0 867 251 72 63 chr9 99409216 99409579 -18453048 + MLT1H LTR MaLR 183 548 -1 497 216 119 34 chr9 99409868 99410044 -18452583 - MER3 DNA MER1_type 0 209 19 238 274 0 0 chr9 99410408 99410459 -18452168 + MER115 DNA AcHobo 643 693 0 1851 224 42 8 chr9 99410499 99410973 -18451654 - MLT1D LTR MaLR -15 490 1 427 315 37 25 chr9 99411143 99411305 -18451322 - MIR SINE MIR -92 170 7 232 344 117 31 chr9 99411346 99411509 -18451118 - MIR SINE MIR 0 262 86 870 302 67 41 chr9 99411510 99412283 -18450344 - L2 LINE L2 -24 3289 2399 634 259 141 43 chr9 99412298 99412718 -18449909 - L2 LINE L2 -1589 1725 1265 714 177 16 8 chr9 99413394 99413518 -18449109 + AluJb SINE Alu 160 284 -28 2351 159 44 2 chr9 99413554 99413963 -18448664 - MSTB LTR MaLR 0 426 1 230 309 72 10 chr9 99413985 99414082 -18448545 - MIR3 SINE MIR -6 202 100 207 378 104 21 chr9 99414521 99415003 -18447624 + L2 LINE L2 1431 1952 -1362 185 246 15 0 chr9 99415175 99415240 -18447387 + T-rich Low_complexity Low_complexity 1 66 0 185 371 38 6 chr9 99415247 99415406 -18447221 + L2 LINE L2 2149 2312 -1002 2282 125 19 19 chr9 99415475 99415850 -18446777 + THE1C LTR MaLR 1 375 0 330 123 0 0 chr9 99416241 99416298 -18446329 + (TA)n Simple_repeat Simple_repeat 1 57 0 277 288 91 0 chr9 99416336 99416402 -18446225 + L2 LINE L2 3134 3205 -67 185 238 0 0 chr9 99416540 99416582 -18446045 + L2 LINE L2 3175 3216 -56 22 0 0 0 chr9 99416920 99416942 -18445685 + AT_rich Low_complexity Low_complexity 1 22 0 235 358 150 0 chr9 99417365 99417485 -18445142 + MIR SINE MIR 21 158 -104 984 328 99 28 chr9 99417938 99418642 -18443985 - L3 LINE CR1 -154 1423 670 2111 134 0 0 chr9 99418739 99419030 -18443597 - AluSc SINE Alu -18 291 1 183 333 0 0 chr9 99419110 99419155 -18443472 + L2 LINE L2 3268 3312 -1 420 20 0 0 chr9 99419474 99419523 -18443104 + (CA)n Simple_repeat Simple_repeat 2 50 0 25 31 0 0 chr9 99419631 99419663 -18442964 + AT_rich Low_complexity Low_complexity 1 32 0 302 377 0 0 chr9 99419673 99419795 -18442832 - MIR SINE MIR -89 173 52 319 299 0 0 chr9 99420475 99420562 -18442065 - L2 LINE L2 -2 3311 3225 190 345 69 62 chr9 99420594 99420739 -18441888 + MIR3 SINE MIR 35 180 -28 314 374 7 14 chr9 99421476 99421623 -18441004 - MIR SINE MIR -92 170 25 188 306 15 112 chr9 99421629 99421650 -18440977 - L2 LINE L2 0 3313 3292 1983 129 0 13 chr9 99421650 99421976 -18440651 - AluSx SINE Alu 0 312 1 188 306 15 112 chr9 99421976 99422088 -18440539 - L2 LINE L2 -21 3292 3193 297 328 24 32 chr9 99422787 99422912 -18439715 + MIR SINE MIR 25 148 -114 1478 251 40 22 chr9 99422920 99423460 -18439167 + MLT2F LTR ERVL 1 601 -62 329 305 16 16 chr9 99423828 99423956 -18438671 - MLT1H LTR MaLR -375 174 47 22 88 0 0 chr9 99424297 99424354 -18438273 + AT_rich Low_complexity Low_complexity 1 57 0 392 284 78 18 chr9 99424501 99424817 -18437810 - L1MC4a LINE L1 -303 5818 5561 1987 140 140 16 chr9 99425037 99425242 -18437385 - MSTA LTR MaLR -2 426 248 1888 65 3 102 chr9 99425242 99425535 -18437092 - AluSp SINE Alu -49 264 1 1987 140 140 16 chr9 99425535 99425708 -18436919 - MSTA LTR MaLR -180 248 1 1214 254 117 26 chr9 99425859 99426319 -18436308 + MLT1D LTR MaLR 1 502 -3 260 232 74 0 chr9 99426684 99426779 -18435848 - L1MC4a LINE L1 -833 5313 5212 6326 139 50 14 chr9 99426829 99428011 -18434616 + Tigger3b DNA MER2_type 2 1225 -6 5312 175 32 50 chr9 99428257 99429553 -18433074 - L1MA5 LINE L1 -8 6292 5032 2357 176 50 7 chr9 99429553 99429991 -18432636 - MSTB2 LTR MaLR 0 457 1 5312 175 32 50 chr9 99429991 99430879 -18431748 - L1MA5 LINE L1 -1268 5032 4129 851 175 0 0 chr9 99431137 99431274 -18431353 - AluJb SINE Alu -175 137 1 3588 266 56 55 chr9 99431466 99432574 -18430053 + L1MC1 LINE L1 110 1216 -4864 1245 146 5 0 chr9 99432574 99432787 -18429840 + L1MA1 LINE L1 6089 6302 0 3588 266 56 55 chr9 99432787 99435203 -18427424 + L1MC1 LINE L1 1216 3630 -2450 7447 37 0 0 chr9 99435203 99436569 -18426058 + L1PA4 LINE L1 4790 6155 0 3588 266 56 55 chr9 99436569 99436629 -18425998 + L1MC1 LINE L1 3630 3688 -2392 1913 161 0 0 chr9 99436629 99436920 -18425707 - AluSx SINE Alu -21 291 1 3588 266 56 55 chr9 99436920 99436936 -18425691 + L1MC1 LINE L1 3688 3702 -2378 3230 198 47 31 chr9 99436936 99437709 -18424918 - LTR1 LTR ERV1 0 785 1 3588 266 56 55 chr9 99437709 99438289 -18424338 + L1MC1 LINE L1 3702 4169 -1911 4743 161 40 2 chr9 99438289 99439142 -18423485 + L1MC1 LINE L1 5378 6262 -5 3588 266 56 55 chr9 99439142 99439409 -18423218 + L1MC1 LINE L1 4169 4434 -1646 2121 210 63 107 chr9 99439410 99439669 -18422958 + L1MB8 LINE L1 4693 4962 -1150 2428 92 0 0 chr9 99439669 99439973 -18422654 + AluY SINE Alu 1 304 -7 2121 210 63 107 chr9 99439973 99440711 -18421916 + L1MB8 LINE L1 4962 5731 -381 313 70 0 0 chr9 99440711 99440754 -18421873 - MLT1A1 LTR MaLR -55 310 268 2121 210 63 107 chr9 99440754 99440803 -18421824 + L1MB8 LINE L1 5731 5781 -331 1822 139 0 46 chr9 99440803 99441106 -18421521 + AluSx SINE Alu 1 289 -23 2121 210 63 107 chr9 99441106 99441503 -18421124 + L1MB8 LINE L1 5781 6112 0 778 325 117 33 chr9 99441772 99441975 -18420652 - L3 LINE CR1 -165 1412 1227 192 40 0 0 chr9 99441975 99442000 -18420627 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 778 325 117 33 chr9 99442000 99442309 -18420318 - L3 LINE CR1 -350 1227 857 543 264 0 0 chr9 99443248 99443373 -18419254 + MLT1F1 LTR MaLR 2 126 -441 415 192 71 0 chr9 99443373 99443472 -18419155 + L1MD3 LINE L1 7405 7510 -485 4140 207 50 23 chr9 99443472 99444483 -18418144 + MER45B DNA AcHobo 1 1039 -1 1325 213 40 62 chr9 99444507 99444957 -18417670 + L1MD3 LINE L1 7540 7979 -16 235 282 43 60 chr9 99444981 99445098 -18417529 - MIR SINE MIR -24 238 124 444 302 8 0 chr9 99445639 99445765 -18416862 - MIR SINE MIR -58 204 78 299 98 12 37 chr9 99445844 99445926 -18416701 + (TA)n Simple_repeat Simple_repeat 1 80 0 1532 184 11 26 chr9 99445928 99446275 -18416352 - L1MA9 LINE L1 -42 6270 5929 294 306 57 8 chr9 99446327 99446451 -18416176 - MIR3 SINE MIR -75 133 4 775 254 16 5 chr9 99446593 99446778 -18415849 + MER5A DNA MER1_type 1 187 -2 1424 214 49 38 chr9 99447372 99447742 -18414885 - MLT1A2 LTR MaLR 0 374 1 1858 152 23 13 chr9 99448162 99448471 -18414156 + AluSx SINE Alu 1 312 0 622 288 96 29 chr9 99449082 99449654 -18412973 + L1MCc LINE L1 1261 2084 -4991 2525 165 21 2 chr9 99449858 99450276 -18412351 - MSTB LTR MaLR 0 426 1 315 317 25 25 chr9 99451090 99451251 -18411376 + MER117 DNA MER1_type 34 194 -3 208 375 16 0 chr9 99451285 99451349 -18411278 - L2 LINE L2 -94 3178 3114 2316 86 7 7 chr9 99452205 99452506 -18410121 + AluSg SINE Alu 1 301 -9 192 272 74 37 chr9 99455237 99455318 -18407309 - L2 LINE L2 -5 3308 3225 253 284 85 104 chr9 99455441 99455758 -18406869 - L2 LINE L2 -344 2970 2660 278 320 33 8 chr9 99455846 99455968 -18406659 - MIR SINE MIR -14 248 124 747 59 0 0 chr9 99456000 99456101 -18406526 + (TCCA)n Simple_repeat Simple_repeat 1 101 0 382 287 66 16 chr9 99456112 99456234 -18406393 - L2 LINE L2 0 3272 3145 198 326 35 58 chr9 99456343 99456429 -18406198 - MIR SINE MIR -152 110 27 1077 82 0 0 chr9 99456978 99457149 -18405478 + (CA)n Simple_repeat Simple_repeat 2 172 0 2329 133 8 5 chr9 99457340 99457709 -18404918 - L1MA4 LINE L1 -1 6299 5930 182 227 0 30 chr9 99458372 99458438 -18404189 + (TATG)n Simple_repeat Simple_repeat 4 67 0 213 214 0 0 chr9 99458541 99458583 -18404044 + GA-rich Low_complexity Low_complexity 1 42 0 216 341 22 0 chr9 99458869 99458960 -18403667 + MIR SINE MIR 51 143 -119 297 319 44 15 chr9 99459431 99459566 -18403061 - MIR3 SINE MIR -23 185 47 270 295 148 0 chr9 99459683 99459805 -18402822 + MIR3 SINE MIR 61 200 -8 482 354 69 36 chr9 99460218 99460835 -18401792 + L2 LINE L2 2671 3302 -11 558 174 72 159 chr9 99461194 99461389 -18401238 + MER97a DNA MER1_type? 2 179 -715 630 293 19 9 chr9 99461646 99461858 -18400769 + MIR SINE MIR 1 214 -48 25331 109 6 11 chr9 99462239 99466328 -18396299 + L1PA7 LINE L1 748 4837 -1624 7261 60 9 2 chr9 99466328 99467574 -18395053 + L1PA7 LINE L1 5197 6467 -2 422 329 93 30 chr9 99467915 99468152 -18394475 - MIR SINE MIR -10 252 1 181 250 97 14 chr9 99468174 99468246 -18394381 - MIR SINE MIR -60 202 125 1852 59 14 0 chr9 99468412 99468634 -18393993 - L1PA7 LINE L1 -3 6151 5927 249 256 23 35 chr9 99469138 99469224 -18393403 - MIR3 SINE MIR -12 196 112 344 290 65 0 chr9 99469357 99469464 -18393163 - L2 LINE L2 0 3313 3200 185 308 19 0 chr9 99469472 99469524 -18393103 + L2 LINE L2 3010 3062 -251 333 299 103 8 chr9 99470146 99470263 -18392364 - L3b LINE CR1 -158 1425 1298 277 288 249 15 chr9 99470284 99470489 -18392138 + MIR SINE MIR 4 256 -6 296 319 145 63 chr9 99470518 99471049 -18391578 - L2 LINE L2 -2 3270 2711 302 318 8 16 chr9 99471185 99471314 -18391313 + L2 LINE L2 2776 2903 -411 418 79 0 16 chr9 99471315 99471378 -18391249 - MADE1 DNA Mariner 0 80 19 291 29 0 0 chr9 99471424 99471459 -18391168 + MADE1 DNA Mariner 46 80 0 489 324 190 12 chr9 99471484 99471811 -18390816 + L2 LINE L2 2927 3311 -2 418 271 60 8 chr9 99472913 99473046 -18389581 + MIR3 SINE MIR 65 204 -4 261 227 61 30 chr9 99473185 99473251 -18389376 - L2 LINE L2 -5 3267 3200 284 264 14 104 chr9 99473329 99473473 -18389154 - L2 LINE L2 -227 3045 2915 187 411 0 0 chr9 99473699 99473772 -18388855 - MIR SINE MIR -111 151 79 339 308 76 50 chr9 99473851 99474049 -18388578 + L2 LINE L2 2852 3054 -218 195 368 58 0 chr9 99474102 99474189 -18388438 - L2 LINE L2 -32 3240 3149 1846 221 40 6 chr9 99474197 99474550 -18388077 + MLT1A1 LTR MaLR 1 365 0 1474 190 46 32 chr9 99474582 99474866 -18387761 + AluJo SINE Alu 1 288 -24 204 67 0 0 chr9 99475498 99475528 -18387099 + (TA)n Simple_repeat Simple_repeat 2 31 0 354 272 0 22 chr9 99475530 99475622 -18387005 + L1MC4 LINE L1 6614 6703 -1339 2080 114 21 0 chr9 99475631 99475921 -18386706 - AluSx SINE Alu -16 296 1 28 0 0 0 chr9 99475979 99476007 -18386620 + AT_rich Low_complexity Low_complexity 1 28 0 267 245 0 0 chr9 99476042 99476091 -18386536 - LTR67 LTR ERVL -476 81 33 272 384 13 26 chr9 99476665 99476816 -18385811 + MIR3 SINE MIR 13 161 -47 1033 210 11 0 chr9 99476904 99477085 -18385542 - MER5A DNA MER1_type -6 183 1 2162 104 7 20 chr9 99477167 99477466 -18385161 + AluSx SINE Alu 1 295 -17 7368 44 0 5 chr9 99477470 99478591 -18384036 + L1PA5 LINE L1 5018 6132 -22 936 123 0 0 chr9 99478594 99478740 -18383887 + (TA)n Simple_repeat Simple_repeat 1 146 0 412 231 255 10 chr9 99478905 99479113 -18383514 + MLT1K LTR MaLR 328 586 -2 441 0 0 0 chr9 99479155 99479204 -18383423 + (A)n Simple_repeat Simple_repeat 1 49 0 1731 49 10 0 chr9 99479272 99479477 -18383150 + L1PA5 LINE L1 5948 6154 0 414 287 32 27 chr9 99479564 99479752 -18382875 - MIR SINE MIR 0 262 74 201 108 0 0 chr9 99479765 99479802 -18382825 + (GA)n Simple_repeat Simple_repeat 1 37 0 189 339 69 39 chr9 99481196 99481326 -18381301 + L2 LINE L2 3179 3312 -1 26 30 0 0 chr9 99481622 99481655 -18380972 + AT_rich Low_complexity Low_complexity 1 33 0 220 346 13 26 chr9 99482743 99482821 -18379806 - L2 LINE L2 -40 3273 3197 1039 218 54 61 chr9 99483526 99483806 -18378821 + MLT1H LTR MaLR 272 549 0 186 319 234 11 chr9 99483836 99483930 -18378697 - L2 LINE L2 -9 3263 3149 182 324 20 29 chr9 99485096 99485198 -18377429 + L2 LINE L2 3019 3119 -153 648 280 41 18 chr9 99485246 99485464 -18377163 + MIR SINE MIR 12 234 -28 278 250 0 0 chr9 99485766 99485826 -18376801 + MIR3 SINE MIR 105 164 -44 398 274 67 30 chr9 99485924 99486088 -18376539 - MIR SINE MIR -56 206 37 273 294 24 12 chr9 99486753 99486838 -18375789 - L3 LINE CR1 -6 1571 1486 552 301 48 40 chr9 99487707 99487956 -18374671 - MIR SINE MIR -2 260 10 530 293 24 30 chr9 99488940 99489107 -18373520 + MIR3 SINE MIR 38 203 -5 581 303 17 34 chr9 99489733 99489908 -18372719 - MIR3 SINE MIR -28 180 9 635 185 103 95 chr9 99490297 99490529 -18372098 + MER113 DNA MER1_type? 287 520 -1 517 256 159 0 chr9 99490630 99490806 -18371821 + MIR SINE MIR 2 205 -57 264 321 172 19 chr9 99490817 99491032 -18371595 - MIR SINE MIR -10 252 5 274 191 0 131 chr9 99491148 99491232 -18371395 - MLT1H LTR MaLR 0 549 477 784 271 49 52 chr9 99492282 99492610 -18370017 + MLT1H LTR MaLR 40 366 -183 335 337 39 11 chr9 99492814 99492992 -18369635 - MIR SINE MIR -31 231 49 192 336 84 15 chr9 99493601 99493732 -18368895 - MIR SINE MIR -70 192 53 261 323 50 71 chr9 99493930 99494128 -18368499 - MIR3 SINE MIR -10 198 5 445 284 94 138 chr9 99494383 99495900 -18366727 - L2 LINE L2 -5 3267 1851 2004 75 15 11 chr9 99495900 99496166 -18366461 + L1PA7 LINE L1 5888 6154 0 445 284 94 138 chr9 99496166 99496539 -18366088 - L2 LINE L2 -1421 1851 1463 224 278 56 14 chr9 99497176 99497248 -18365379 + MIR3 SINE MIR 87 161 -47 299 300 18 36 chr9 99497306 99497416 -18365211 + MER103 DNA DNA 2 109 -57 219 353 113 7 chr9 99497770 99497920 -18364707 - L3 LINE CR1 -15 1562 1397 390 305 13 45 chr9 99498260 99498414 -18364213 + MIR3 SINE MIR 54 202 -6 335 353 9 0 chr9 99498608 99498724 -18363903 - L2 LINE L2 -2 3311 3195 678 299 79 8 chr9 99498998 99499252 -18363375 - MLT1J LTR MaLR -222 289 18 412 176 0 0 chr9 99499289 99499357 -18363270 - MLT1I LTR MaLR 0 409 342 506 315 5 49 chr9 99499905 99500089 -18362538 - MIR SINE MIR -80 182 7 195 319 138 38 chr9 99500192 99500352 -18362275 - L2 LINE L2 -173 3099 2924 783 299 133 28 chr9 99500897 99501392 -18361235 + L2 LINE L2 2776 3313 0 185 83 28 0 chr9 99501453 99501489 -18361138 + (CAAAAA)n Simple_repeat Simple_repeat 2 38 0 329 299 48 48 chr9 99502207 99502374 -18360253 + MIR SINE MIR 20 186 -76 276 280 56 53 chr9 99503347 99503557 -18359070 + MIR SINE MIR 3 201 -7 181 236 27 0 chr9 99503557 99503667 -18358960 + (CAATT)n Simple_repeat Simple_repeat 1 113 0 229 156 0 44 chr9 99503938 99503983 -18358644 + (TGAA)n Simple_repeat Simple_repeat 3 45 0 481 261 119 23 chr9 99504583 99504759 -18357868 - MIR SINE MIR -22 240 48 543 185 110 0 chr9 99505349 99505495 -18357132 + L1MA7 LINE L1 5937 6098 -193 532 123 85 9 chr9 99505489 99505595 -18357032 + L1MA9 LINE L1 6161 6274 -38 * 234 272 33 43 chr9 99505664 99505756 -18356871 - MER5A DNA MER1_type -2 187 97 335 296 140 41 chr9 99505759 99506002 -18356625 - L2 LINE L2 0 3313 3047 283 185 0 0 chr9 99506036 99506090 -18356537 - L1P4 LINE L1 -536 5632 5579 1343 107 24 39 chr9 99506085 99506222 -18356405 + L1PA13 LINE L1 5957 6092 -71 2457 101 58 12 chr9 99506222 99506568 -18356059 + THE1B LTR MaLR 3 364 0 1343 107 24 39 chr9 99506568 99506636 -18355991 + L1PA13 LINE L1 6092 6159 -4 251 319 53 35 chr9 99506976 99507089 -18355538 - MIR SINE MIR -98 164 50 197 119 0 203 chr9 99507651 99507710 -18354917 + L2 LINE L2 3265 3311 -2 721 252 87 21 chr9 99507712 99507954 -18354673 - MIR SINE MIR 0 262 5 1716 240 154 17 chr9 99508302 99508782 -18353845 + MLT1G LTR MaLR 45 590 0 499 295 63 31 chr9 99508803 99509057 -18353570 + MIR SINE MIR 1 262 0 254 346 0 4 chr9 99509073 99509165 -18353462 - MIR SINE MIR -62 146 73 1304 208 26 42 chr9 99509719 99509833 -18352794 + AluJo SINE Alu 4 118 -194 213 94 0 0 chr9 99509833 99509865 -18352762 + (CA)n Simple_repeat Simple_repeat 2 33 0 1304 208 26 42 chr9 99509865 99510063 -18352564 + AluJo SINE Alu 118 311 -1 281 250 50 12 chr9 99510079 99510159 -18352468 - MIR3 SINE MIR -7 201 119 188 83 0 28 chr9 99510296 99510332 -18352295 + (TTTTTG)n Simple_repeat Simple_repeat 5 39 0 483 286 23 51 chr9 99510762 99510937 -18351690 + MIR SINE MIR 20 189 -73 2320 92 3 0 chr9 99511044 99511339 -18351288 + AluSp SINE Alu 1 296 -17 187 327 0 0 chr9 99511886 99511941 -18350686 + MIR3 SINE MIR 147 201 -7 2260 120 158 13 chr9 99512391 99512765 -18349862 - MSTA LTR MaLR 0 428 1 755 258 38 6 chr9 99513091 99513300 -18349327 + MIR SINE MIR 33 246 -16 180 111 0 0 chr9 99513309 99513336 -18349291 + (CAT)n Simple_repeat Simple_repeat 1 27 0 482 246 71 112 chr9 99513490 99513714 -18348913 - MER58C DNA MER1_type 0 215 1 316 318 124 0 chr9 99514072 99514201 -18348426 + L3 LINE CR1 1416 1560 -17 189 316 13 26 chr9 99514515 99514591 -18348036 + L2 LINE L2 3231 3305 -8 867 175 65 0 chr9 99514822 99515022 -18347605 - AluJb SINE Alu 0 355 146 2219 126 0 0 chr9 99515041 99515391 -18347236 - AluSx SINE Alu 0 352 3 232 333 0 0 chr9 99515397 99515466 -18347161 - MIR SINE MIR -90 172 104 827 191 0 0 chr9 99515478 99515609 -18347018 - FLAM_A SINE Alu -2 131 1 527 287 25 0 chr9 99516523 99516645 -18345982 + MIR SINE MIR 26 150 -58 817 292 39 56 chr9 99517066 99517606 -18345021 - L1ME LINE L1 -395 5726 5192 571 256 36 7 chr9 99517826 99517963 -18344664 + L2 LINE L2 3121 3261 -11 615 307 148 15 chr9 99518279 99518849 -18343778 + L2 LINE L2 2667 3309 -4 371 246 104 38 chr9 99519209 99519374 -18343253 - MIR SINE MIR -62 146 17 302 289 0 35 chr9 99520423 99520537 -18342090 + CT-rich Low_complexity Low_complexity 3 112 0 7961 37 0 2 chr9 99520618 99521563 -18341064 + L1PA5 LINE L1 5207 6150 -4 702 149 0 0 chr9 99521708 99521842 -18340785 + (TG)n Simple_repeat Simple_repeat 1 134 0 249 268 0 0 chr9 99521908 99521964 -18340663 - L2 LINE L2 0 3313 3258 690 63 0 21 chr9 99522201 99522296 -18340331 - MER74A LTR ERVL -465 93 1 227 100 0 25 chr9 99522440 99522451 -18340176 + (GA)n Simple_repeat Simple_repeat 2 12 -28 2174 128 7 0 chr9 99522451 99522757 -18339870 + AluSx SINE Alu 1 308 -4 227 100 0 25 chr9 99522757 99522785 -18339842 + (GA)n Simple_repeat Simple_repeat 12 40 0 25 0 0 0 chr9 99523089 99523114 -18339513 + AT_rich Low_complexity Low_complexity 1 25 0 249 309 151 13 chr9 99523484 99523636 -18338991 + MIR SINE MIR 89 261 -1 276 376 63 16 chr9 99523692 99523881 -18338746 + L3 LINE CR1 1362 1559 -18 2234 107 3 0 chr9 99523959 99524259 -18338368 + AluSx SINE Alu 1 301 -11 543 331 135 46 chr9 99524764 99525284 -18337343 - L3 LINE CR1 -8 1569 1004 470 243 243 0 chr9 99525322 99525511 -18337116 - MIR SINE MIR -26 236 2 548 288 86 60 chr9 99525638 99525808 -18336819 - L3 LINE CR1 -656 921 738 2365 93 0 7 chr9 99525808 99526109 -18336518 + AluY SINE Alu 1 299 -12 548 288 86 60 chr9 99526109 99526240 -18336387 - L3 LINE CR1 -839 738 612 301 308 113 31 chr9 99526467 99526626 -18336001 - L3 LINE CR1 -1071 506 335 399 358 40 10 chr9 99526720 99526876 -18335751 - MIR3 SINE MIR -44 164 6 1596 98 0 14 chr9 99527408 99527622 -18335005 + AluSc SINE Alu 78 288 -21 327 49 0 0 chr9 99527628 99527669 -18334958 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 1857 156 0 3 chr9 99527826 99528132 -18334495 - AluSx SINE Alu 0 307 3 524 312 0 29 chr9 99528461 99528634 -18333993 - MIR SINE MIR -45 217 50 196 333 72 51 chr9 99529239 99529515 -18333112 + L2 LINE L2 2565 2846 -468 1178 79 0 0 chr9 99529529 99529681 -18332946 - L1PA10 LINE L1 -234 5934 5783 * 1447 101 26 31 chr9 99529674 99529922 -18332705 + L1PA10 LINE L1 5922 6168 0 1690 165 36 7 chr9 99529948 99530257 -18332370 - MER96B DNA MER1_type? -4 413 96 886 28 0 0 chr9 99530483 99530589 -18332038 - AluY SINE Alu -3 308 203 248 220 0 0 chr9 99530749 99530799 -18331828 + (TTCA)n Simple_repeat Simple_repeat 3 52 0 922 163 26 32 chr9 99530821 99531011 -18331616 - MER53 DNA DNA 0 189 1 472 357 38 58 chr9 99531026 99531719 -18330908 - L2 LINE L2 -33 3239 2571 523 247 82 24 chr9 99532609 99532779 -18329848 + MIR SINE MIR 35 214 -48 301 310 127 25 chr9 99532795 99532953 -18329674 - MIR SINE MIR -41 221 48 451 353 34 17 chr9 99533075 99533313 -18329314 + MIR SINE MIR 3 244 -18 216 158 0 0 chr9 99533331 99533369 -18329258 + CT-rich Low_complexity Low_complexity 2 39 0 226 311 143 19 chr9 99535121 99535282 -18327345 - L2 LINE L2 -7 3306 3126 284 271 45 73 chr9 99535317 99535494 -18327133 - L2 LINE L2 -254 3018 2847 871 310 8 4 chr9 99535496 99535741 -18326886 + MIR SINE MIR 11 256 -6 1925 160 0 7 chr9 99535880 99536186 -18326441 + AluJo SINE Alu 1 304 -8 400 270 148 16 chr9 99536524 99536713 -18325914 - MIR SINE MIR -15 247 34 501 353 19 23 chr9 99538012 99538273 -18324354 - MIR SINE MIR 0 262 3 218 269 0 60 chr9 99538802 99538869 -18323758 - MIR SINE MIR -114 94 32 205 294 8 109 chr9 99539351 99539399 -18323228 - L3 LINE CR1 -35 1542 1491 2108 112 0 17 chr9 99539399 99539694 -18322933 + AluSc SINE Alu 1 290 -19 205 294 8 109 chr9 99539694 99539764 -18322863 - L3 LINE CR1 -86 1491 1436 296 253 97 71 chr9 99539769 99540539 -18322088 - L1M4 LINE L1 -2682 3464 2675 392 143 16 16 chr9 99540681 99540744 -18321883 + MER81 DNA DNA 52 114 0 342 200 27 0 chr9 99540812 99540887 -18321740 - L1MB8 LINE L1 -27 6151 6075 1189 208 24 8 chr9 99540898 99541148 -18321479 + L1MB8 LINE L1 5784 6037 -141 7357 66 0 0 chr9 99541203 99542488 -18320139 - L1PA7 LINE L1 -6 6148 4863 6279 89 9 0 chr9 99542488 99543339 -18319288 + L1PA7 LINE L1 4004 4862 -1284 31 44 0 0 chr9 99543362 99543407 -18319220 + AT_rich Low_complexity Low_complexity 1 45 0 761 269 90 62 chr9 99544082 99544517 -18318110 - HAL1b LINE L1 -723 625 179 186 43 0 0 chr9 99544538 99544561 -18318066 + (TG)n Simple_repeat Simple_repeat 2 24 0 2336 213 63 10 chr9 99547062 99547556 -18315071 + MLT2B1 LTR ERVL 1 520 0 237 33 0 0 chr9 99548068 99548098 -18314529 + (TG)n Simple_repeat Simple_repeat 1 30 0 237 33 0 0 chr9 99548097 99548127 -18314500 + (GA)n Simple_repeat Simple_repeat 1 30 0 335 266 173 14 chr9 99548317 99548465 -18314162 - MIR SINE MIR -63 145 1 184 297 0 68 chr9 99549434 99549508 -18313119 + MIR SINE MIR 85 153 -109 442 182 0 11 chr9 99549756 99549844 -18312783 - Charlie4a DNA MER1_type -8 500 414 1293 179 45 57 chr9 99549849 99550201 -18312426 - LTR37A LTR ERV1 -2 424 77 1166 275 50 10 chr9 99550325 99550721 -18311906 - Charlie4a DNA MER1_type -94 414 3 275 263 38 38 chr9 99551804 99551884 -18310743 - MIR SINE MIR -155 107 28 594 291 113 44 chr9 99552124 99552513 -18310114 - L2 LINE L2 -94 3219 2804 487 281 115 38 chr9 99552524 99552729 -18309898 - L2 LINE L2 0 3272 3045 1901 193 97 23 chr9 99552729 99553160 -18309467 + MLT1C LTR MaLR 5 467 0 487 281 115 38 chr9 99553160 99553189 -18309438 - L2 LINE L2 -227 3045 3020 235 171 23 136 chr9 99553365 99553453 -18309174 + Charlie8 DNA MER1_type 212 289 -2128 235 185 37 0 chr9 99553458 99553512 -18309115 + Charlie8 DNA MER1_type 2344 2399 -18 528 300 60 28 chr9 99554030 99554247 -18308380 + MIR SINE MIR 38 259 -3 1282 118 0 0 chr9 99554257 99554427 -18308200 - AluSg/x SINE Alu -13 299 130 2821 29 0 0 chr9 99554430 99554741 -18307886 - AluY SINE Alu 0 311 1 198 222 0 0 chr9 99554749 99554803 -18307824 + (TTA)n Simple_repeat Simple_repeat 1 54 0 210 325 26 0 chr9 99555498 99555575 -18307052 + L2 LINE L2 2691 2769 -545 187 329 49 0 chr9 99555674 99555756 -18306871 + L2 LINE L2 2394 2479 -835 473 323 148 13 chr9 99556073 99556196 -18306431 - MIR SINE MIR 0 262 157 697 269 122 70 chr9 99556196 99556721 -18305906 + MLT1H1 LTR MaLR 1 552 -3 473 323 148 13 chr9 99556721 99556826 -18305801 - MIR SINE MIR -105 157 3 537 321 19 10 chr9 99557520 99557729 -18304898 - MIR SINE MIR -1 261 51 1198 142 0 0 chr9 99557837 99558013 -18304614 + AluSq SINE Alu 135 310 -3 228 325 85 32 chr9 99558132 99558320 -18304307 - MIR SINE MIR 0 262 65 2852 7 0 0 chr9 99558542 99558847 -18303780 + AluYa5 SINE Alu 1 305 -6 425 221 131 8 chr9 99558847 99558969 -18303658 - MER96 DNA MER1_type? -38 137 1 322 249 143 102 chr9 99559112 99559377 -18303250 - L2 LINE L2 -1 3271 2996 189 74 0 0 chr9 99559785 99559812 -18302815 + (CAA)n Simple_repeat Simple_repeat 2 28 0 1727 244 37 20 chr9 99559812 99560271 -18302356 - MLT1C LTR MaLR 0 467 1 256 298 60 51 chr9 99561259 99561474 -18301153 + L2 LINE L2 2896 3112 -160 369 202 12 12 chr9 99561575 99561659 -18300968 + MIR3 SINE MIR 89 172 -36 202 224 0 0 chr9 99561783 99561832 -18300795 + (TTA)n Simple_repeat Simple_repeat 2 50 0 871 255 69 13 chr9 99561857 99562088 -18300539 - MIR SINE MIR -6 256 13 463 350 25 0 chr9 99562770 99562930 -18299697 - MIR3 SINE MIR -15 193 30 301 257 20 40 chr9 99562974 99563075 -18299552 - MIR3 SINE MIR -29 179 81 * 318 292 143 39 chr9 99563073 99563227 -18299400 + L2 LINE L2 3100 3269 -3 282 180 0 0 chr9 99563237 99563298 -18299329 + (TGAA)n Simple_repeat Simple_repeat 2 62 0 367 326 58 11 chr9 99563549 99563737 -18298890 - MIR SINE MIR -55 207 5 243 185 37 86 chr9 99564081 99564162 -18298465 - L2 LINE L2 -5 3267 3191 234 128 0 0 chr9 99564213 99564252 -18298375 + (TTA)n Simple_repeat Simple_repeat 1 39 0 327 104 0 0 chr9 99564319 99564367 -18298260 + (ATG)n Simple_repeat Simple_repeat 1 48 0 541 175 108 8 chr9 99564375 99564495 -18298132 + MLT1C LTR MaLR 7 138 -329 477 178 0 116 chr9 99564607 99564736 -18297891 + L1MB8 LINE L1 6064 6177 -1 1043 254 18 0 chr9 99565140 99565357 -18297270 - MER58A DNA MER1_type 0 224 4 201 344 47 0 chr9 99565392 99565456 -18297171 + MIR SINE MIR 40 106 -102 1662 111 0 0 chr9 99565632 99565867 -18296760 - L1P LINE L1 -1200 4946 4712 207 250 0 0 chr9 99565912 99565960 -18296667 + CT-rich Low_complexity Low_complexity 1 48 0 6433 77 17 2 chr9 99565970 99567518 -18295109 - L1PA8A LINE L1 0 6131 4553 2206 168 34 11 chr9 99567773 99568130 -18294497 + MLT1A1 LTR MaLR 1 365 0 331 222 53 70 chr9 99568218 99568381 -18294246 + MIR SINE MIR 13 164 -62 222 208 0 0 chr9 99568977 99569025 -18293602 + GA-rich Low_complexity Low_complexity 1 48 0 730 169 26 16 chr9 99569116 99569561 -18293066 + CT-rich Low_complexity Low_complexity 1 449 0 296 77 0 0 chr9 99569563 99569602 -18293025 + (TTTCC)n Simple_repeat Simple_repeat 5 43 0 666 171 11 22 chr9 99569603 99569784 -18292843 + CT-rich Low_complexity Low_complexity 2 180 0 262 250 206 29 chr9 99570004 99570140 -18292487 - MER69A DNA AcHobo 0 177 18 767 259 135 19 chr9 99571153 99571412 -18291215 - LTR16C LTR ERVL -2 489 201 222 278 19 56 chr9 99571570 99571678 -18290949 + MIR SINE MIR 159 262 0 2382 236 19 2 chr9 99572190 99572732 -18289895 - L1ME1 LINE L1 -5 6161 5611 603 157 50 25 chr9 99572732 99572853 -18289774 + MLT1B LTR MaLR 1 124 -266 * 842 150 20 48 chr9 99572842 99572989 -18289638 + MLT1B LTR MaLR 248 390 0 1278 231 60 4 chr9 99572991 99573526 -18289101 - L1ME1 LINE L1 -553 5613 5047 599 309 102 18 chr9 99573855 99574130 -18288497 - L2 LINE L2 -467 2847 2550 300 212 153 51 chr9 99574467 99574604 -18288023 - MIR SINE MIR -1 261 111 225 191 21 21 chr9 99575221 99575268 -18287359 + MIR SINE MIR 27 73 -135 521 317 61 63 chr9 99575337 99575607 -18287020 - MLT1H LTR MaLR -185 364 94 2038 242 80 37 chr9 99575607 99576173 -18286454 - MLT1E LTR MaLR -3 590 1 521 317 61 63 chr9 99576173 99576265 -18286362 - MLT1H LTR MaLR -455 94 3 268 241 0 0 chr9 99576908 99576962 -18285665 + MIR SINE MIR 98 151 -57 220 242 0 16 chr9 99577172 99577234 -18285393 + MIR SINE MIR 202 262 0 371 288 34 38 chr9 99577534 99577698 -18284929 - MIR SINE MIR -63 145 39 271 296 157 0 chr9 99577863 99577971 -18284656 + L2 LINE L2 3148 3272 0 288 266 128 0 chr9 99578104 99578198 -18284429 - L2 LINE L2 -28 3244 3139 6408 92 7 7 chr9 99578981 99580045 -18282582 - L1PA13 LINE L1 -2 6161 5131 4433 175 9 14 chr9 99580045 99580915 -18281712 + L1PA13 LINE L1 4272 5137 -1009 258 32 0 0 chr9 99580926 99580957 -18281670 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 43821 30 22 1 chr9 99580957 99586972 -18275655 - L1PA2 LINE L1 -11 6144 4 523 302 44 63 chr9 99587218 99587470 -18275157 + L2 LINE L2 1874 2120 -1194 916 295 121 45 chr9 99587477 99587970 -18274657 + L2 LINE L2 2353 2912 -401 2539 221 15 22 chr9 99587970 99588512 -18274115 - MLT1F LTR MaLR -4 538 1 916 295 121 45 chr9 99588512 99588696 -18273931 + L2 LINE L2 2912 3081 -232 1270 155 13 30 chr9 99588696 99588928 -18273699 + L1MA9 LINE L1 6011 6238 -74 3244 142 28 37 chr9 99589105 99589703 -18272924 + L1MA9 LINE L1 5692 6284 -28 352 113 65 16 chr9 99589723 99589785 -18272842 + L1MA9 LINE L1 6247 6311 -1 418 325 9 0 chr9 99589848 99589962 -18272665 + L2 LINE L2 3199 3313 0 209 261 17 51 chr9 99590536 99590712 -18271915 + (CAGAGA)n Simple_repeat Simple_repeat 3 172 0 302 219 31 16 chr9 99591768 99591832 -18270795 - MER5B DNA MER1_type -6 172 108 1066 281 54 11 chr9 99591834 99592186 -18270441 + L1ME3A LINE L1 5594 5960 -202 1693 171 3 21 chr9 99592446 99592733 -18269894 + AluSx SINE Alu 12 293 -19 693 161 65 97 chr9 99592735 99592952 -18269675 + L1ME3A LINE L1 5956 6165 -5 365 263 29 51 chr9 99592953 99593090 -18269537 - MER5B DNA MER1_type -43 135 2 421 314 58 35 chr9 99593094 99593320 -18269307 + MIR SINE MIR 31 261 -1 260 222 155 7 chr9 99594052 99594174 -18268453 + MIR SINE MIR 15 148 -63 353 314 74 22 chr9 99594709 99594938 -18267689 - MIR SINE MIR -20 242 2 475 321 80 60 chr9 99595102 99595551 -18267076 - L2 LINE L2 -4 3309 2852 708 270 144 66 chr9 99595554 99596103 -18266524 + MLT1G1 LTR MaLR 4 595 0 1553 207 69 0 chr9 99596114 99596447 -18266180 - MER89 LTR ERV1 -7 552 197 464 154 0 66 chr9 99596424 99596465 -18266162 - MER89 LTR ERV1 -474 85 52 * 2261 135 33 33 chr9 99596465 99596829 -18265798 + THE1B LTR MaLR 1 364 0 464 154 0 66 chr9 99596829 99596878 -18265749 - MER89 LTR ERV1 -507 52 1 792 308 58 59 chr9 99597243 99597876 -18264751 - L2 LINE L2 0 3313 2688 1710 174 7 7 chr9 99598078 99598372 -18264255 + AluJo SINE Alu 1 294 -18 625 289 123 0 chr9 99598432 99598660 -18263967 - MIR SINE MIR -4 258 3 225 159 0 0 chr9 99599249 99599293 -18263334 + T-rich Low_complexity Low_complexity 1 44 0 805 253 22 0 chr9 99599512 99599690 -18262937 - MER5A DNA MER1_type -7 182 1 691 259 62 122 chr9 99599734 99600318 -18262309 + L3 LINE CR1 984 1532 -45 349 319 37 15 chr9 99600428 99600563 -18262064 + L2 LINE L2 2590 2727 -587 260 385 60 19 chr9 99600615 99600902 -18261725 + L2 LINE L2 2726 3023 -249 1792 135 161 47 chr9 99600911 99601064 -18261563 + MSTA LTR MaLR 1 135 -293 7938 29 0 31 chr9 99601064 99602515 -18260112 - L1PA4 LINE L1 -2 6153 4719 1792 135 161 47 chr9 99602515 99602702 -18259925 + MSTA LTR MaLR 135 393 -35 1946 152 0 0 chr9 99602702 99603031 -18259596 - AluSx SINE Alu 0 329 1 1792 135 161 47 chr9 99603031 99603072 -18259555 + MSTA LTR MaLR 393 428 0 189 0 0 0 chr9 99603261 99603282 -18259345 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 549 314 108 32 chr9 99603301 99603616 -18259011 - MER102b DNA MER1_type -1 340 2 796 196 124 31 chr9 99604564 99604583 -18258044 + MLT1H LTR MaLR 1 17 -532 216 0 0 0 chr9 99604583 99604607 -18258020 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 796 196 124 31 chr9 99604607 99604781 -18257846 + MLT1H LTR MaLR 17 212 -337 240 167 0 0 chr9 99604799 99604847 -18257780 + CT-rich Low_complexity Low_complexity 2 49 0 431 248 97 110 chr9 99604881 99605200 -18257427 + MLT1H LTR MaLR 235 549 0 259 286 9 67 chr9 99605200 99605305 -18257322 + MIR SINE MIR 87 185 -77 318 180 0 0 chr9 99605867 99605928 -18256699 + A-rich Low_complexity Low_complexity 1 61 0 315 340 10 0 chr9 99606095 99606195 -18256432 - MER117 DNA MER1_type -20 177 77 853 285 27 27 chr9 99606223 99606483 -18256144 - MIR SINE MIR 0 262 3 281 349 12 12 chr9 99606598 99606681 -18255946 - MIR3 SINE MIR -39 169 87 581 298 160 4 chr9 99606763 99606988 -18255639 - MIR SINE MIR -1 261 2 209 253 138 46 chr9 99607346 99607433 -18255194 + L2 LINE L2 3199 3293 -20 277 233 78 11 chr9 99607435 99607525 -18255102 - MIR3 SINE MIR -21 187 92 1900 89 0 0 chr9 99607702 99607948 -18254679 + AluY SINE Alu 55 300 -11 742 272 56 0 chr9 99608386 99608581 -18254046 - MIR3 SINE MIR 0 208 3 1192 227 58 9 chr9 99608924 99609254 -18253373 - LTR37A LTR ERV1 0 426 81 406 222 52 52 chr9 99609562 99609680 -18252947 + MIR SINE MIR 37 153 -65 23 92 0 0 chr9 99609770 99609835 -18252792 + AT_rich Low_complexity Low_complexity 1 65 0 2279 89 13 19 chr9 99611057 99611370 -18251257 + AluY SINE Alu 1 311 0 471 352 87 13 chr9 99612030 99612260 -18250367 - MIR SINE MIR -5 257 11 24 0 0 0 chr9 99613142 99613166 -18249461 + AT_rich Low_complexity Low_complexity 1 24 0 366 306 194 19 chr9 99613883 99614089 -18248538 - MIR SINE MIR -10 252 11 198 328 0 0 chr9 99614400 99614467 -18248160 - L2 LINE L2 -56 3257 3191 * 279 253 10 111 chr9 99614465 99614525 -18248102 - MIR SINE MIR -171 91 43 1316 175 54 29 chr9 99614525 99614839 -18247788 + MER33 DNA MER1_type 1 322 -2 279 253 10 111 chr9 99614839 99614877 -18247750 - MIR SINE MIR -219 43 3 228 238 12 60 chr9 99614991 99615075 -18247552 - L2 LINE L2 -246 3067 2988 185 313 121 10 chr9 99615779 99615878 -18246749 - MIR SINE MIR -130 132 23 318 294 111 22 chr9 99617053 99617233 -18245394 - L2 LINE L2 0 3313 3118 1635 303 196 44 chr9 99617334 99617919 -18244708 - L2 LINE L2 -449 2865 2370 2220 125 6 0 chr9 99617919 99618230 -18244397 - AluSq SINE Alu 0 313 1 1635 303 196 44 chr9 99618230 99619836 -18242791 - L2 LINE L2 -944 2370 307 594 248 0 0 chr9 99619836 99619973 -18242654 + L1MA6 LINE L1 6157 6293 -7 1635 303 196 44 chr9 99619973 99620078 -18242549 - L2 LINE L2 -3007 307 219 234 287 0 35 chr9 99620064 99620151 -18242476 + MIR SINE MIR 179 262 0 * 554 270 63 27 chr9 99621445 99621667 -18240960 + MIR SINE MIR 33 262 0 333 330 76 8 chr9 99621963 99622081 -18240546 + MIR3 SINE MIR 79 204 -4 206 371 35 14 chr9 99622403 99622546 -18240081 + L2 LINE L2 2772 2917 -397 418 383 91 19 chr9 99622566 99622994 -18239633 + L2 LINE L2 2507 2965 -349 270 342 68 34 chr9 99623143 99623260 -18239367 + L2 LINE L2 2942 3062 -210 255 152 0 0 chr9 99625698 99625744 -18236883 + CT-rich Low_complexity Low_complexity 3 48 0 2214 128 0 3 chr9 99626192 99626498 -18236129 + AluSx SINE Alu 1 305 -7 372 294 137 0 chr9 99626666 99626768 -18235859 - L2 LINE L2 -30 3242 3127 1779 177 74 32 chr9 99627195 99627738 -18234889 - MLT2A2 LTR ERVL 0 554 1 2142 59 12 0 chr9 99628268 99628524 -18234103 - L1PA7 LINE L1 -2 6152 5894 522 83 0 0 chr9 99629638 99629710 -18232917 + (TG)n Simple_repeat Simple_repeat 2 73 0 5939 147 39 9 chr9 99629905 99631146 -18231481 + L1MA3 LINE L1 5026 6299 -6 1697 181 10 10 chr9 99631375 99631678 -18230949 + AluJb SINE Alu 9 311 -1 387 204 23 23 chr9 99631745 99631833 -18230794 - L2 LINE L2 0 3313 3226 723 157 32 45 chr9 99632260 99632421 -18230206 + L1PB4 LINE L1 5996 6286 -17 2109 57 8 23 chr9 99632421 99632684 -18229943 - L1PA10 LINE L1 -9 6159 5901 810 251 18 0 chr9 99632747 99632914 -18229713 - MER5A DNA MER1_type 0 189 20 2186 106 3 3 chr9 99633456 99633749 -18228878 - AluY SINE Alu -18 293 1 2187 82 0 3 chr9 99634373 99634655 -18227972 - AluY SINE Alu -8 303 23 251 218 115 0 chr9 99634902 99634980 -18227647 - MIR SINE MIR -65 197 111 656 266 80 5 chr9 99634998 99635197 -18227430 + MIR SINE MIR 32 245 -17 1955 152 10 10 chr9 99636504 99636813 -18225814 - AluJb SINE Alu -2 310 2 23 33 0 0 chr9 99637206 99637236 -18225391 + AT_rich Low_complexity Low_complexity 1 30 0 211 269 55 33 chr9 99639200 99639321 -18223306 + MIR SINE MIR 62 146 -62 444 322 125 6 chr9 99639369 99639574 -18223053 + MIR SINE MIR 33 252 -10 239 340 63 19 chr9 99639710 99639869 -18222758 + MLT1K LTR MaLR 337 502 -86 369 0 0 0 chr9 99639895 99639936 -18222691 + (CA)n Simple_repeat Simple_repeat 1 41 0 1262 300 147 12 chr9 99640893 99641331 -18221296 + L3 LINE CR1 868 1404 -173 1557 55 28 50 chr9 99641331 99641405 -18221222 - L1PA13 LINE L1 0 6163 6089 2010 125 10 3 chr9 99641405 99641709 -18220918 - AluSx SINE Alu -6 306 1 1557 55 28 50 chr9 99641709 99641852 -18220775 - L1PA13 LINE L1 -74 6089 5951 1262 300 147 12 chr9 99641852 99641993 -18220634 + L3 LINE CR1 1404 1525 -52 418 299 85 0 chr9 99642247 99642411 -18220216 + MIR3 SINE MIR 31 208 0 238 399 15 8 chr9 99642828 99642961 -18219666 - L2 LINE L2 -2 3270 3137 244 357 10 0 chr9 99642982 99643080 -18219547 + L2 LINE L2 3170 3268 -4 2222 118 3 6 chr9 99643485 99643799 -18218828 - AluSq SINE Alu 0 313 1 741 279 53 25 chr9 99643811 99644055 -18218572 - MLT1L LTR MaLR -13 602 352 1060 266 137 40 chr9 99644080 99644576 -18218051 + MLT1H LTR MaLR 1 544 -5 230 234 0 0 chr9 99644648 99644695 -18217932 - MLT1L LTR MaLR -568 47 1 940 245 80 28 chr9 99645342 99645473 -18217154 + L2 LINE L2 2963 3086 -227 2214 111 10 3 chr9 99645473 99645771 -18216856 - AluSx SINE Alu -12 300 1 940 245 80 28 chr9 99645771 99645965 -18216662 + L2 LINE L2 3086 3305 -8 225 65 0 0 chr9 99645967 99645998 -18216629 + (TGAA)n Simple_repeat Simple_repeat 2 32 0 193 200 14 29 chr9 99646422 99646472 -18216155 + CT-rich Low_complexity Low_complexity 1 51 -18 2439 116 37 6 chr9 99646472 99646825 -18215802 - THE1B LTR MaLR 0 364 1 193 200 14 29 chr9 99646825 99646844 -18215783 + CT-rich Low_complexity Low_complexity 51 69 0 477 235 125 7 chr9 99647253 99647389 -18215238 - MIR3 SINE MIR -27 181 30 3159 151 8 4 chr9 99647431 99647914 -18214713 - MER31A LTR ERV1 0 485 1 360 272 26 35 chr9 99649287 99649401 -18213226 - MER81 DNA DNA -1 113 1 8241 23 0 0 chr9 99649697 99650652 -18211975 - L1PA3 LINE L1 0 6155 5202 1063 29 0 15 chr9 99650652 99650788 -18211839 + L1PA3 LINE L1 5078 5211 -935 21 36 0 0 chr9 99650916 99650944 -18211683 + AT_rich Low_complexity Low_complexity 1 28 0 903 234 55 0 chr9 99651501 99651702 -18210925 - MIR SINE MIR -40 222 11 304 271 52 109 chr9 99652684 99652747 -18209880 + L1MC4a LINE L1 5706 5771 -2037 2038 156 0 0 chr9 99652747 99653042 -18209585 + AluJb SINE Alu 1 295 -17 304 271 52 109 chr9 99653042 99653188 -18209439 + L1MC4a LINE L1 5771 5903 -1905 195 250 65 109 chr9 99653648 99653740 -18208887 - MIR SINE MIR -59 203 116 185 358 60 15 chr9 99653756 99653823 -18208804 - MIR3 SINE MIR -138 70 1 402 271 76 35 chr9 99653975 99654119 -18208508 + L2 LINE L2 3121 3270 -2 300 309 121 13 chr9 99654772 99654921 -18207706 - MIR SINE MIR -18 244 80 1212 303 63 22 chr9 99654946 99655434 -18207193 - L2 LINE L2 0 3313 2806 270 248 109 55 chr9 99655950 99656117 -18206510 + MLT1H LTR MaLR 382 536 -13 283 284 21 53 chr9 99656140 99656235 -18206392 - L2 LINE L2 -30 3242 3151 520 366 38 9 chr9 99656419 99656632 -18205995 + MIR SINE MIR 6 224 -38 237 159 0 0 chr9 99656661 99656705 -18205922 + T-rich Low_complexity Low_complexity 1 44 0 2608 139 26 63 chr9 99656709 99656948 -18205679 - L1MB1 LINE L1 -1 6167 5954 2169 120 3 10 chr9 99656948 99657256 -18205371 - AluSx SINE Alu -4 308 3 2608 139 26 63 chr9 99657256 99657506 -18205121 - L1MB1 LINE L1 -214 5954 5696 241 367 17 17 chr9 99657614 99657734 -18204893 + L3 LINE CR1 829 948 -629 295 332 193 30 chr9 99657870 99658072 -18204555 + MIR SINE MIR 20 254 -8 192 152 0 0 chr9 99658089 99658122 -18204505 + (TGG)n Simple_repeat Simple_repeat 3 35 0 191 264 0 56 chr9 99658422 99658494 -18204133 - L2 LINE L2 -289 2983 2916 300 231 0 15 chr9 99658552 99658617 -18204010 + MIR SINE MIR 185 248 -14 223 308 25 33 chr9 99658649 99658769 -18203858 + L3 LINE CR1 1401 1519 -58 230 79 0 26 chr9 99659401 99659439 -18203188 + (TTCC)n Simple_repeat Simple_repeat 2 38 0 2027 135 0 3 chr9 99659558 99659869 -18202758 + AluSx SINE Alu 1 310 -2 441 278 99 80 chr9 99659996 99660298 -18202329 - L2 LINE L2 0 3313 3006 301 179 24 0 chr9 99660340 99660424 -18202203 + (TTCA)n Simple_repeat Simple_repeat 3 88 0 466 326 108 60 chr9 99660425 99660858 -18201769 + L2 LINE L2 2819 3272 0 498 293 85 5 chr9 99660943 99661131 -18201496 - MIR SINE MIR -32 230 28 599 262 177 11 chr9 99661737 99661957 -18200670 - MIR SINE MIR -13 249 1 571 329 108 18 chr9 99662626 99662903 -18199724 + L2 LINE L2 2551 2852 -462 4180 87 35 26 chr9 99663107 99664117 -18198510 - MER11A LTR ERVK 0 1266 1 573 237 102 17 chr9 99664118 99664295 -18198332 + L2 LINE L2 3120 3311 -2 216 317 124 37 chr9 99664495 99664899 -18197728 + L2 LINE L2 2520 2958 -356 2143 67 3 11 chr9 99665008 99665290 -18197337 + AluY SINE Alu 22 301 -10 935 168 13 0 chr9 99665290 99665445 -18197182 - FAM SINE Alu -18 157 1 455 281 191 5 chr9 99665485 99665684 -18196943 + MIR SINE MIR 11 246 -16 198 272 12 49 chr9 99665727 99665808 -18196819 + MIR SINE MIR 65 142 -66 307 157 96 48 chr9 99666047 99666130 -18196497 - L2 LINE L2 0 3313 3227 343 308 30 8 chr9 99666216 99666349 -18196278 - LTR33 LTR ERVL -8 513 378 775 306 0 19 chr9 99666439 99666655 -18195972 - LTR33 LTR ERVL -309 212 1 548 314 40 22 chr9 99667168 99667391 -18195236 - MIR SINE MIR 0 262 36 1131 192 5 27 chr9 99667402 99667626 -18195001 + MER20 DNA MER1_type 1 219 0 2719 160 20 7 chr9 99667655 99668105 -18194522 + MSTB2 LTR MaLR 2 457 0 716 351 48 18 chr9 99668145 99668478 -18194149 - L2 LINE L2 -469 2845 2503 237 233 0 83 chr9 99668701 99668761 -18193866 - MER91B DNA MER1_type -116 74 20 808 338 35 25 chr9 99668846 99669213 -18193414 + L3 LINE CR1 1205 1575 -2 491 337 75 22 chr9 99669623 99669890 -18192737 + L2 LINE L2 2220 2500 -814 716 263 70 25 chr9 99669895 99670323 -18192304 - LTR16C LTR ERVL 0 491 1 250 283 119 40 chr9 99670324 99670501 -18192126 + L2 LINE L2 2504 2694 -620 622 277 101 38 chr9 99670509 99670747 -18191880 + MIR SINE MIR 9 261 -1 342 325 92 29 chr9 99671135 99671341 -18191286 + MIR SINE MIR 36 254 -8 2220 318 50 12 chr9 99671542 99672388 -18190239 + HERVL LTR ERVL 3565 4442 -1212 351 327 16 88 chr9 99672784 99673090 -18189537 + HERVL LTR ERVL 5075 5358 -406 2198 99 0 17 chr9 99673136 99673438 -18189189 - AluSx SINE Alu -15 297 1 487 294 53 98 chr9 99673678 99673749 -18188878 + LTR16C LTR ERVL 98 171 -320 1971 200 97 27 chr9 99673749 99674233 -18188394 - MLT2B1 LTR ERVL -2 518 1 487 294 53 98 chr9 99674233 99674518 -18188109 + LTR16C LTR ERVL 171 438 -53 459 255 106 14 chr9 99674531 99674672 -18187955 + MIR SINE MIR 90 243 -19 262 346 31 80 chr9 99675697 99675859 -18186768 - MIR3 SINE MIR -49 159 6 226 289 89 11 chr9 99676431 99676521 -18186106 + MIR SINE MIR 57 153 -109 507 296 7 7 chr9 99676999 99677151 -18185476 + MIR3 SINE MIR 30 181 -27 289 258 0 86 chr9 99677192 99677285 -18185342 + L2 LINE L2 3188 3272 0 407 271 131 20 chr9 99677408 99677607 -18185020 + MLT1H LTR MaLR 124 344 -205 258 293 0 0 chr9 99678180 99678296 -18184331 + (TA)n Simple_repeat Simple_repeat 1 116 0 720 255 10 29 chr9 99679046 99679250 -18183377 + MIR SINE MIR 63 262 0 295 355 49 36 chr9 99679307 99679649 -18182978 - L2 LINE L2 -214 3058 2716 404 262 152 82 chr9 99679759 99680003 -18182624 - MIR SINE MIR 0 262 2 2977 29 3 0 chr9 99680023 99680372 -18182255 - L1PA4 LINE L1 -552 5603 5254 4694 27 4 2 chr9 99680378 99680930 -18181697 + L1PA4 LINE L1 5602 6154 -1 345 264 195 31 chr9 99681002 99681161 -18181466 + MIR3 SINE MIR 17 201 -7 180 176 0 0 chr9 99681782 99681816 -18180811 + A-rich Low_complexity Low_complexity 1 34 0 2306 281 77 37 chr9 99681957 99683301 -18179326 - L2 LINE L2 -3 3310 1066 667 290 175 5 chr9 99683278 99683495 -18179132 + MIR SINE MIR 8 261 -1 * 377 257 64 57 chr9 99684065 99684205 -18178422 - L2 LINE L2 -1821 1493 1353 618 269 58 3 chr9 99684321 99684520 -18178107 + MIR SINE MIR 58 262 0 558 290 148 0 chr9 99685131 99685286 -18177341 + MER5A DNA MER1_type 6 183 -6 441 323 26 31 chr9 99685293 99685485 -18177142 - MIR SINE MIR -52 210 20 200 226 32 32 chr9 99685811 99685873 -18176754 + CT-rich Low_complexity Low_complexity 3 64 0 21 0 0 0 chr9 99686977 99686998 -18175629 + AT_rich Low_complexity Low_complexity 1 21 0 878 217 5 5 chr9 99687016 99687223 -18175404 + L1MA4 LINE L1 6007 6213 -87 498 288 7 0 chr9 99688295 99688441 -18174186 - MER117 DNA MER1_type -50 147 1 344 310 108 16 chr9 99688445 99688574 -18174053 - MIR3 SINE MIR -52 156 16 656 276 74 1 chr9 99688656 99688861 -18173766 + MIR SINE MIR 20 237 -25 1132 261 76 49 chr9 99689514 99690042 -18172585 - MLT1F LTR MaLR 0 542 1 489 286 45 7 chr9 99690358 99690512 -18172115 + MIR SINE MIR 98 257 -5 450 254 95 8 chr9 99690530 99690656 -18171971 - MIR SINE MIR 0 262 126 5155 124 26 22 chr9 99690660 99691514 -18171113 + L1PA16 LINE L1 5309 6165 -1 225 317 12 12 chr9 99691517 99691599 -18171028 - MIR SINE MIR -128 134 53 794 290 91 14 chr9 99691799 99692161 -18170466 + L3 LINE CR1 1186 1575 -2 536 345 49 20 chr9 99692567 99692912 -18169715 + L2 LINE L2 2034 2388 -926 381 281 16 41 chr9 99692929 99693050 -18169577 + MIR3 SINE MIR 82 199 -9 499 271 125 21 chr9 99693126 99693318 -18169309 - MIR SINE MIR 0 262 51 242 333 63 75 chr9 99693337 99693511 -18169116 + MIR SINE MIR 28 199 -63 1525 149 18 43 chr9 99694259 99694384 -18168243 + AluJo SINE Alu 14 141 -171 2481 132 70 7 chr9 99694384 99694787 -18167840 + MSTA LTR MaLR 1 428 0 9880 155 23 6 chr9 99694787 99696409 -18166218 + MSTA-int LTR MaLR 1 1651 0 2096 144 83 13 chr9 99696413 99696809 -18165818 + MSTA LTR MaLR 5 428 0 1525 149 18 43 chr9 99696809 99696958 -18165669 + AluJo SINE Alu 143 287 -25 260 264 0 0 chr9 99697149 99697202 -18165425 + MIR SINE MIR 198 250 -12 450 266 175 13 chr9 99697593 99697747 -18164880 - MER5A DNA MER1_type -6 183 5 * 475 256 76 23 chr9 99697745 99697917 -18164710 + MIR SINE MIR 32 212 -50 825 200 25 6 chr9 99698291 99698451 -18164176 + AluJo SINE Alu 1 163 -149 757 269 101 4 chr9 99699289 99699516 -18163111 - MIR SINE MIR 0 262 14 4677 216 26 4 chr9 99699637 99700757 -18161870 - L1M4 LINE L1 -786 5360 4216 * 10830 31 0 0 chr9 99700751 99702021 -18160606 - L1PA4 LINE L1 -1073 5073 3804 6373 38 0 0 chr9 99702019 99702955 -18159672 + L1PA4 LINE L1 5073 6008 -147 * 183 250 0 67 chr9 99703128 99703188 -18159439 - L2 LINE L2 0 3272 3217 515 221 7 73 chr9 99703277 99703413 -18159214 - MIR SINE MIR -70 192 66 434 296 69 21 chr9 99703461 99703650 -18158977 + MIR SINE MIR 51 248 -14 195 235 0 0 chr9 99703701 99703752 -18158875 + GA-rich Low_complexity Low_complexity 3 53 0 22 0 0 0 chr9 99703829 99703851 -18158776 + AT_rich Low_complexity Low_complexity 1 22 0 446 303 90 7 chr9 99704952 99705097 -18157530 + MIR SINE MIR 32 188 -74 451 316 42 28 chr9 99705155 99705370 -18157257 - MIR SINE MIR -24 238 21 566 280 6 9 chr9 99706028 99706185 -18156442 + MIR SINE MIR 42 197 -65 1951 98 29 0 chr9 99706248 99706552 -18156075 + AluSp SINE Alu 1 312 0 2001 138 3 0 chr9 99706573 99706878 -18155749 + AluSx SINE Alu 1 306 -6 290 365 87 22 chr9 99707022 99707258 -18155369 - MIR SINE MIR -6 256 3 253 308 133 7 chr9 99707507 99707650 -18154977 + MIR SINE MIR 98 258 -4 293 250 8 0 chr9 99707991 99708119 -18154508 + CT-rich Low_complexity Low_complexity 2 130 0 208 156 0 22 chr9 99708168 99708213 -18154414 + (CA)n Simple_repeat Simple_repeat 1 44 0 480 273 92 35 chr9 99709565 99709792 -18152835 + MIR SINE MIR 21 260 -2 390 249 146 93 chr9 99709793 99709837 -18152790 + MIR SINE MIR 46 86 -176 2263 73 3 0 chr9 99709837 99710124 -18152503 + AluSp SINE Alu 1 288 -25 390 249 146 93 chr9 99710124 99710284 -18152343 + MIR SINE MIR 86 261 -1 248 312 178 13 chr9 99710555 99710712 -18151915 - L2 LINE L2 -339 2975 2793 1343 161 0 0 chr9 99710777 99711007 -18151620 - L1MA4A LINE L1 -5 6298 6069 6517 125 34 18 chr9 99711008 99712119 -18150508 - Tigger3b DNA MER2_type -34 1197 1 224 250 62 0 chr9 99712119 99712183 -18150444 - L2 LINE L2 -779 2535 2468 1140 143 124 138 chr9 99712189 99712559 -18150068 + MLT1A1 LTR MaLR 1 365 0 2341 72 10 7 chr9 99712773 99713080 -18149547 - AluY SINE Alu -3 308 1 261 176 216 61 chr9 99713302 99713450 -18149177 + L1ME4a LINE L1 5949 6119 -2 385 374 81 12 chr9 99713544 99713878 -18148749 - L3 LINE CR1 -555 1022 666 835 275 14 5 chr9 99713894 99714105 -18148522 - MIR SINE MIR -1 261 49 832 236 63 16 chr9 99714250 99714441 -18148186 + MIR SINE MIR 61 260 -2 1896 117 7 3 chr9 99714528 99714846 -18147781 + AluSq SINE Alu 1 319 0 1019 249 112 1 chr9 99715570 99715922 -18146705 + MLT1J1 LTR MaLR 5 439 -7 508 296 37 37 chr9 99715947 99716136 -18146491 + MIR3 SINE MIR 14 202 -6 211 184 26 0 chr9 99716475 99716513 -18146114 - MIR SINE MIR -62 146 108 266 377 135 0 chr9 99716738 99716953 -18145674 - L3 LINE CR1 -717 860 617 1476 169 22 183 chr9 99717046 99717127 -18145500 - MLT1D LTR MaLR 0 505 413 1894 138 0 0 chr9 99717127 99717455 -18145172 - AluSx SINE Alu 0 312 6 1476 169 22 183 chr9 99717455 99717975 -18144652 - MLT1D LTR MaLR -92 413 1 281 245 49 112 chr9 99717990 99718133 -18144494 - L2 LINE L2 0 3272 3139 186 43 0 0 chr9 99718285 99718308 -18144319 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 14001 49 72 4 chr9 99719269 99721052 -18141575 + L1P LINE L1 1 1905 -4241 841 25 0 58 chr9 99721155 99721275 -18141352 + L1PA4 LINE L1 6043 6155 0 738 214 90 20 chr9 99721309 99721510 -18141117 - L1 LINE L1 -1914 4232 4018 2527 122 19 0 chr9 99721553 99721921 -18140706 + THE1C LTR MaLR 1 375 0 370 335 75 0 chr9 99721950 99722123 -18140504 - MIR SINE MIR -29 233 48 1667 185 3 0 chr9 99722123 99722410 -18140217 + AluJo SINE Alu 1 288 -24 276 295 42 32 chr9 99722575 99722670 -18139957 + MIR SINE MIR 45 140 -68 451 171 37 12 chr9 99722699 99722781 -18139846 + MER81 DNA DNA 21 104 -10 721 250 25 15 chr9 99722828 99723028 -18139599 - L2 LINE L2 -1 3312 3111 1569 201 69 32 chr9 99723034 99723471 -18139156 + L1ME3 LINE L1 5710 6162 0 2841 142 36 0 chr9 99724510 99724983 -18137644 + L1MA8 LINE L1 5765 6254 -37 1061 186 5 5 chr9 99725003 99725218 -18137409 + L1MD1 LINE L1 6027 6241 -1 774 225 71 0 chr9 99725276 99725445 -18137182 + MER3 DNA MER1_type 1 181 -28 1898 185 26 21 chr9 99725445 99725844 -18136783 - MLT1C LTR MaLR 0 467 2 244 167 0 0 chr9 99725844 99725884 -18136743 - MER3 DNA MER1_type -128 81 42 334 282 69 38 chr9 99725972 99726103 -18136524 - L2 LINE L2 -9 3304 3170 792 228 124 92 chr9 99726544 99726970 -18135657 - MLT1H LTR MaLR -2 547 108 810 283 87 17 chr9 99727040 99727340 -18135287 + MLT1I LTR MaLR 89 409 0 424 354 25 70 chr9 99727349 99727533 -18135094 - L2 LINE L2 -253 3019 2847 1216 231 35 40 chr9 99727533 99727909 -18134718 - MLT1A2 LTR MaLR 0 374 1 424 354 25 70 chr9 99727909 99728070 -18134557 - L2 LINE L2 -425 2847 2680 2687 118 0 0 chr9 99728123 99728487 -18134140 - THE1B LTR MaLR 0 364 1 474 259 71 18 chr9 99728823 99728993 -18133634 + MIR SINE MIR 47 225 -37 2250 135 30 28 chr9 99729261 99729624 -18133003 - THE1B LTR MaLR 0 364 1 11084 107 15 6 chr9 99729624 99731190 -18131437 - THE1B-int LTR MaLR 0 1580 1 2304 128 31 19 chr9 99731190 99731550 -18131077 - THE1B LTR MaLR 0 364 1 419 288 20 7 chr9 99732116 99732269 -18130358 + MER103 DNA DNA 10 164 -2 434 240 7 0 chr9 99732545 99732695 -18129932 + (CAT)n Simple_repeat Simple_repeat 3 153 0 224 336 22 82 chr9 99732746 99732880 -18129747 + MIR SINE MIR 19 144 -64 603 182 8 8 chr9 99733050 99733171 -18129456 - MLT1B LTR MaLR -269 121 1 386 261 203 0 chr9 99733249 99733402 -18129225 + MIR SINE MIR 79 262 0 287 376 7 40 chr9 99733464 99733613 -18129014 - MIR3 SINE MIR -29 179 36 270 226 0 32 chr9 99734156 99734218 -18128409 + MIR3 SINE MIR 14 73 -135 225 250 0 0 chr9 99734339 99734383 -18128244 - L2 LINE L2 -18 3254 3211 265 281 124 0 chr9 99735164 99735253 -18127374 - MLT1I LTR MaLR -208 201 102 735 275 32 14 chr9 99735432 99735650 -18126977 + MLT1J2 LTR MaLR 38 259 -191 1350 190 43 0 chr9 99735675 99735933 -18126694 - AluJb SINE Alu -2 310 42 286 180 99 99 chr9 99735956 99736052 -18126575 + MLT1J2 LTR MaLR 318 416 -34 1997 152 36 33 chr9 99736052 99736415 -18126212 - THE1B LTR MaLR 0 364 1 286 180 99 99 chr9 99736415 99736429 -18126198 + MLT1J2 LTR MaLR 415 428 -22 222 336 125 8 chr9 99737523 99737651 -18124976 + MIR SINE MIR 107 249 -13 249 108 0 0 chr9 99737666 99737703 -18124924 + (ATGGTG)n Simple_repeat Simple_repeat 1 37 0 21 0 0 0 chr9 99737912 99737933 -18124694 + AT_rich Low_complexity Low_complexity 1 21 0 828 267 120 43 chr9 99738014 99738295 -18124332 + MLT1H LTR MaLR 25 346 -203 2392 67 0 3 chr9 99738295 99738592 -18124035 + AluY SINE Alu 1 296 -15 828 267 120 43 chr9 99738592 99738703 -18123924 + MLT1H LTR MaLR 346 447 -102 470 342 6 6 chr9 99738821 99738979 -18123648 + MER117 DNA MER1_type 40 197 0 204 185 0 0 chr9 99739227 99739281 -18123346 + CT-rich Low_complexity Low_complexity 1 54 0 655 331 120 11 chr9 99739286 99739636 -18122991 + L3 LINE CR1 1054 1441 -136 347 301 49 16 chr9 99740116 99740239 -18122388 + L2 LINE L2 2225 2351 -963 465 318 182 0 chr9 99740307 99740527 -18122100 - MIR SINE MIR -1 261 2 808 295 101 45 chr9 99740532 99741331 -18121296 + L2 LINE L2 2425 3258 -14 339 274 16 117 chr9 99741580 99741828 -18120799 - L2 LINE L2 -183 3089 2867 221 307 0 11 chr9 99742034 99742122 -18120505 + L3b LINE CR1 1110 1196 -387 294 73 0 0 chr9 99742123 99742164 -18120463 + (TG)n Simple_repeat Simple_repeat 2 42 0 312 369 0 9 chr9 99742468 99742579 -18120048 + MIR SINE MIR 21 130 -132 522 294 25 69 chr9 99742871 99743116 -18119511 + MIR SINE MIR 28 261 -1 256 358 11 0 chr9 99743551 99743646 -18118981 + L2 LINE L2 2874 2969 -344 270 310 92 17 chr9 99743912 99744086 -18118541 - L2 LINE L2 -383 2931 2745 * 436 347 141 12 chr9 99744076 99744396 -18118231 + L2 LINE L2 2875 3235 -37 2732 148 32 32 chr9 99744569 99744755 -18117872 + MLT1C LTR MaLR 1 186 -281 405 0 0 0 chr9 99744755 99744800 -18117827 + (CA)n Simple_repeat Simple_repeat 2 46 0 2732 148 32 32 chr9 99744800 99745078 -18117549 + MLT1C LTR MaLR 185 465 -2 398 289 82 30 chr9 99745594 99745729 -18116898 + MIR3 SINE MIR 1 142 -66 2015 112 7 13 chr9 99745743 99746047 -18116580 - AluSx SINE Alu -10 302 1 221 241 38 76 chr9 99746128 99746207 -18116420 + MIR SINE MIR 20 95 -167 393 319 106 61 chr9 99746321 99746830 -18115797 - L2 LINE L2 -7 3265 2709 350 269 19 9 chr9 99747240 99747348 -18115279 - MIR3 SINE MIR -22 186 78 937 247 18 22 chr9 99747608 99747831 -18114796 + MER58A DNA MER1_type 1 222 -2 464 270 195 11 chr9 99747851 99748025 -18114602 + MIR SINE MIR 23 228 -34 228 237 0 17 chr9 99748025 99748084 -18114543 + GA-rich Low_complexity Low_complexity 1 58 0 731 298 12 12 chr9 99749083 99749341 -18113286 - MIR SINE MIR 0 262 5 468 331 0 30 chr9 99749428 99749594 -18113033 - MIR SINE MIR -73 189 29 282 269 46 46 chr9 99749845 99749953 -18112674 + L2 LINE L2 3161 3268 -4 * 318 311 17 31 chr9 99749937 99750083 -18112544 - MIR3 SINE MIR -63 145 14 330 26 0 0 chr9 99750152 99750191 -18112436 + (CA)n Simple_repeat Simple_repeat 1 39 0 503 253 119 76 chr9 99750264 99750592 -18112035 + L2 LINE L2 2930 3271 -1 2708 178 78 19 chr9 99750751 99751286 -18111341 - MLT1F1 LTR MaLR 0 567 1 252 149 0 0 chr9 99751293 99751340 -18111287 + (GGAA)n Simple_repeat Simple_repeat 4 50 0 678 58 0 0 chr9 99751341 99751428 -18111199 + (GAAA)n Simple_repeat Simple_repeat 4 90 0 340 265 198 26 chr9 99752379 99752560 -18110067 - MIR SINE MIR -13 249 42 234 362 113 0 chr9 99753135 99753276 -18109351 + MIR SINE MIR 36 192 -70 1170 299 31 5 chr9 99754088 99754472 -18108155 + MLT1I LTR MaLR 16 409 0 22 0 0 0 chr9 99754528 99754550 -18108077 + AT_rich Low_complexity Low_complexity 1 22 0 184 373 76 22 chr9 99755107 99755332 -18107295 - MIR SINE MIR -19 243 7 223 305 96 10 chr9 99755440 99755555 -18107072 + MIR SINE MIR 27 159 -49 368 322 38 73 chr9 99755566 99755880 -18106747 - L2 LINE L2 -127 3186 2884 445 176 0 0 chr9 99755887 99755972 -18106655 + L1MA8 LINE L1 6196 6280 -11 2456 123 25 74 chr9 99755972 99756420 -18106207 + MSTB LTR MaLR 1 426 0 63 0 0 0 chr9 99756422 99756485 -18106142 + AT_rich Low_complexity Low_complexity 1 63 0 806 265 103 22 chr9 99756785 99757135 -18105492 - MLT1J2 LTR MaLR -58 392 44 285 310 70 58 chr9 99757325 99757496 -18105131 + MIR3 SINE MIR 33 205 -3 414 312 60 32 chr9 99758498 99758870 -18103757 + L2 LINE L2 2678 3052 -261 402 283 53 43 chr9 99759010 99759197 -18103430 + MIR SINE MIR 9 197 -65 572 288 13 58 chr9 99759297 99759523 -18103104 + MIR SINE MIR 40 255 -7 198 103 0 0 chr9 99759654 99759683 -18102944 + (TTCC)n Simple_repeat Simple_repeat 4 32 0 189 0 0 0 chr9 99759686 99759707 -18102920 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 595 175 0 0 chr9 99759762 99759859 -18102768 + FLAM_A SINE Alu 1 97 -45 198 267 0 0 chr9 99759895 99759985 -18102642 + (TTGG)n Simple_repeat Simple_repeat 1 90 0 408 143 0 0 chr9 99760409 99760479 -18102148 + (CA)n Simple_repeat Simple_repeat 2 71 0 2502 47 0 20 chr9 99760649 99760950 -18101677 + AluY SINE Alu 1 295 -16 360 295 168 0 chr9 99761073 99761263 -18101364 - L3 LINE CR1 -33 1544 1323 329 280 191 1 chr9 99761611 99761801 -18100826 + MIR SINE MIR 26 250 -12 2111 163 112 48 chr9 99762078 99762411 -18100216 - MLT2B2 LTR ERVL 0 515 144 2230 115 10 0 chr9 99762411 99762715 -18099912 - AluSx SINE Alu -5 307 1 2111 163 112 48 chr9 99762715 99762835 -18099792 - MLT2B2 LTR ERVL -371 144 33 370 341 8 0 chr9 99762994 99763126 -18099501 + MIR SINE MIR 84 216 -46 467 56 0 169 chr9 99763148 99763237 -18099390 - MADE1 DNA Mariner -6 74 1 635 276 20 47 chr9 99763326 99763580 -18099047 + MIR SINE MIR 2 248 -14 396 291 126 17 chr9 99763640 99763815 -18098812 + MIR SINE MIR 54 247 -15 528 16 0 0 chr9 99764154 99764215 -18098412 + (TG)n Simple_repeat Simple_repeat 2 62 0 1329 174 4 3 chr9 99764682 99764942 -18097685 - MER7A DNA MER2_type -1 336 1 735 293 108 15 chr9 99765582 99765917 -18096710 + MLT1J2 LTR MaLR 52 417 -33 3052 87 2 5 chr9 99768695 99769109 -18093518 + L1PB1 LINE L1 5738 6150 -1 436 302 78 0 chr9 99769152 99769331 -18093296 + MIR SINE MIR 20 212 -50 371 242 5 143 chr9 99769829 99769923 -18092704 - MIR3 SINE MIR -1 207 160 2199 109 0 22 chr9 99769923 99770236 -18092391 + AluSx SINE Alu 1 306 -6 371 242 5 143 chr9 99770236 99770364 -18092263 - MIR3 SINE MIR -48 160 16 389 269 128 0 chr9 99770696 99770845 -18091782 + MIR SINE MIR 87 254 -8 343 373 70 15 chr9 99771794 99771995 -18090632 - L2 LINE L2 -85 3187 2976 564 304 22 43 chr9 99772085 99772361 -18090266 - MLT2E LTR ERVL 0 628 359 497 231 50 25 chr9 99772375 99772496 -18090131 - MLT2E LTR ERVL -471 157 34 468 248 158 0 chr9 99773806 99773939 -18088688 + MIR SINE MIR 13 166 -96 6644 72 26 3 chr9 99773957 99775297 -18087330 - L1PA8A LINE L1 -10 6121 4771 18122 121 11 2 chr9 99775297 99778048 -18084579 + L1PA8A LINE L1 1993 4765 -1381 733 259 22 0 chr9 99778193 99778378 -18084249 - MIR SINE MIR -73 189 1 267 262 78 0 chr9 99778657 99778760 -18083867 + MIR SINE MIR 82 192 -70 2129 145 34 47 chr9 99778934 99779314 -18083313 - THE1C LTR MaLR 0 375 1 952 274 31 17 chr9 99779509 99779801 -18082826 - LTR16C LTR ERVL 0 491 196 287 184 0 0 chr9 99779833 99779882 -18082745 - LTR16C LTR ERVL -370 121 73 267 337 71 0 chr9 99780403 99780501 -18082126 - L2 LINE L2 -1 3271 3167 305 331 0 53 chr9 99780810 99780961 -18081666 + L2 LINE L2 2955 3097 -175 396 315 94 33 chr9 99781005 99781218 -18081409 - MLT1J LTR MaLR -4 507 282 777 223 205 0 chr9 99781284 99781513 -18081114 + MLT1J2 LTR MaLR 116 391 -59 747 223 71 20 chr9 99781537 99781894 -18080733 + LTR16A LTR ERVL 1 450 0 782 249 169 8 chr9 99781910 99782171 -18080456 - MLT1J LTR MaLR -205 306 4 579 251 86 58 chr9 99782202 99782445 -18080182 - MIR SINE MIR -11 251 2 432 271 34 0 chr9 99782445 99782559 -18080068 + L2 LINE L2 3141 3258 -14 376 300 138 14 chr9 99782569 99782852 -18079775 - L2 LINE L2 -830 2484 2167 581 235 75 38 chr9 99783976 99784189 -18078438 - LTR45 LTR ERV1 -1 524 304 194 302 41 6 chr9 99784516 99784685 -18077942 + L2 LINE L2 2486 2660 -654 356 330 87 42 chr9 99784782 99785206 -18077421 + L2 LINE L2 2827 3269 -3 450 214 119 0 chr9 99785767 99785893 -18076734 - MIR SINE MIR -108 154 14 283 251 37 0 chr9 99786371 99786469 -18076158 - MIR SINE MIR -64 144 42 433 314 14 7 chr9 99786957 99787097 -18075530 - MIR3 SINE MIR -24 184 44 214 343 114 0 chr9 99787096 99787201 -18075426 + L2 LINE L2 3155 3271 -1 * 297 0 0 0 chr9 99787313 99787346 -18075281 + (CA)n Simple_repeat Simple_repeat 2 34 0 273 288 57 45 chr9 99787533 99787710 -18074917 - L2 LINE L2 -31 3282 3104 314 224 197 48 chr9 99787751 99787898 -18074729 - LTR16A1 LTR ERVL -1 456 288 354 290 19 9 chr9 99787921 99788028 -18074599 - LTR16A1 LTR ERVL -293 164 57 547 325 0 18 chr9 99788063 99788229 -18074398 - L2 LINE L2 -259 3054 2892 271 221 70 35 chr9 99789088 99789174 -18073453 - MIR3 SINE MIR -105 103 15 1888 167 0 0 chr9 99789713 99790001 -18072626 + AluJb SINE Alu 1 288 -24 213 374 24 0 chr9 99790310 99790433 -18072194 + MIR SINE MIR 65 190 -72 188 215 54 65 chr9 99790465 99790558 -18072069 - MIR3 SINE MIR -1 207 116 732 281 54 58 chr9 99790874 99791317 -18071310 - L1ME4a LINE L1 -219 5902 5458 604 278 106 39 chr9 99791316 99791805 -18070822 - L1ME4a LINE L1 -2 6119 5598 * 260 261 99 27 chr9 99792332 99792443 -18070184 + LTR67 LTR ERVL 425 543 -14 2124 152 71 2 chr9 99792443 99792838 -18069789 + L1MA8 LINE L1 5864 6285 -6 877 217 32 5 chr9 99792992 99793209 -18069418 + MIR SINE MIR 2 224 -38 359 305 99 0 chr9 99793295 99793426 -18069201 - MIR SINE MIR -72 190 47 432 294 77 0 chr9 99793600 99793770 -18068857 - MIR SINE MIR -11 251 69 479 238 135 11 chr9 99794665 99794850 -18067777 - L2 LINE L2 0 3313 3106 407 291 51 25 chr9 99795522 99795718 -18066909 + L2 LINE L2 2647 2847 -467 3568 63 4 0 chr9 99795740 99796198 -18066429 - L1PA7 LINE L1 0 6154 5695 2396 46 0 0 chr9 99796198 99796482 -18066145 + L1PA7 LINE L1 5402 5685 -469 2296 214 91 20 chr9 99796758 99797293 -18065334 - L1ME1 LINE L1 -5 6161 5580 2305 93 0 13 chr9 99797293 99797594 -18065033 + AluY SINE Alu 1 297 -14 2296 214 91 20 chr9 99797594 99797643 -18064984 - L1ME1 LINE L1 -586 5580 5536 449 159 159 37 chr9 99797701 99797808 -18064819 + L2 LINE L2 3193 3312 -1 380 274 13 52 chr9 99797803 99797956 -18064671 - MIR SINE MIR -65 197 51 * 1810 182 32 30 chr9 99798225 99798508 -18064119 - MER89 LTR ERV1 0 559 273 2598 128 62 51 chr9 99798508 99798669 -18063958 + MER101 LTR ERV1 1 159 -315 1550 156 0 0 chr9 99798669 99798907 -18063720 - AluSg/x SINE Alu -5 305 68 2598 128 62 51 chr9 99798907 99799214 -18063413 + MER101 LTR ERV1 159 474 0 1810 182 32 30 chr9 99799214 99799299 -18063328 - MER89 LTR ERV1 -286 273 190 436 129 71 0 chr9 99799276 99799346 -18063281 - MER89 LTR ERV1 -481 78 4 * 258 95 0 0 chr9 99799495 99799537 -18063090 + (TG)n Simple_repeat Simple_repeat 1 42 0 519 220 150 12 chr9 99800027 99800200 -18062427 - MIR SINE MIR -26 236 40 185 274 16 0 chr9 99800345 99800407 -18062220 + MIR SINE MIR 89 151 -111 634 271 27 5 chr9 99800539 99800755 -18061872 + MIR SINE MIR 34 256 -6 185 238 79 32 chr9 99800949 99801012 -18061615 + L2 LINE L2 3204 3269 -3 358 251 169 32 chr9 99801202 99801220 -18061407 + MIR SINE MIR 14 28 -234 2539 69 0 0 chr9 99801220 99801524 -18061103 + AluY SINE Alu 1 304 -7 358 251 169 32 chr9 99801524 99801724 -18060903 + MIR SINE MIR 28 262 0 234 217 110 39 chr9 99801876 99801979 -18060648 - MIR SINE MIR -59 149 37 502 280 85 16 chr9 99802214 99802403 -18060224 + MIR SINE MIR 60 261 -1 276 77 0 0 chr9 99802801 99802840 -18059787 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1041 126 46 3 chr9 99803527 99803708 -18058919 - L1PA13 LINE L1 -318 5845 5679 * 2309 102 6 3 chr9 99803686 99804010 -18058617 + L1PA13 LINE L1 5838 6162 -1 284 346 70 40 chr9 99804067 99804394 -18058233 + L2 LINE L2 2918 3254 -18 2887 225 60 52 chr9 99804627 99805446 -18057181 + L1MC4a LINE L1 6448 7272 -536 505 338 38 5 chr9 99805485 99805698 -18056929 + MIR SINE MIR 42 261 -1 205 156 0 0 chr9 99806712 99806744 -18055883 + CT-rich Low_complexity Low_complexity 6 37 0 304 277 16 49 chr9 99807241 99807425 -18055202 + L1ME4a LINE L1 5726 5903 -218 1398 208 55 76 chr9 99807686 99808161 -18054466 + MLT1C LTR MaLR 3 467 0 239 229 0 0 chr9 99808943 99808991 -18053636 + L3 LINE CR1 1517 1564 -13 270 334 113 29 chr9 99809216 99809871 -18052756 - L2 LINE L2 -341 2973 2264 284 250 0 39 chr9 99810589 99810693 -18051934 + GA-rich Low_complexity Low_complexity 2 101 0 977 316 41 43 chr9 99811249 99811447 -18051180 - L2 LINE L2 -4 3309 3112 4718 66 24 2 chr9 99811447 99811712 -18050915 + L1PB2 LINE L1 5514 5772 -379 510 17 0 0 chr9 99811712 99811771 -18050856 + (TA)n Simple_repeat Simple_repeat 2 60 0 4718 66 24 2 chr9 99811771 99812129 -18050498 + L1PB2 LINE L1 5772 6151 0 977 316 41 43 chr9 99812129 99812501 -18050126 - L2 LINE L2 -201 3112 2740 676 275 159 55 chr9 99813215 99813875 -18048752 + L2 LINE L2 2590 3312 -1 290 233 89 22 chr9 99813965 99814055 -18048572 - MIR3 SINE MIR -49 159 64 436 279 38 38 chr9 99814633 99814791 -18047836 + MER91A DNA MER1_type 22 179 -17 205 319 106 18 chr9 99814941 99815054 -18047573 + L2 LINE L2 2624 2746 -568 245 314 231 0 chr9 99815175 99815296 -18047331 + L2 LINE L2 3165 3313 0 571 228 39 0 chr9 99815762 99815889 -18046738 - MER94 DNA DNA 0 134 3 457 239 72 22 chr9 99816574 99816712 -18045915 - MIR SINE MIR -71 191 47 350 284 159 111 chr9 99817633 99817904 -18044723 + L2 LINE L2 2985 3268 -4 180 0 0 0 chr9 99818067 99818087 -18044540 + (A)n Simple_repeat Simple_repeat 1 20 0 1003 283 75 48 chr9 99818265 99818679 -18043948 + LTR16A LTR ERVL 17 441 -9 4832 119 15 0 chr9 99819047 99819761 -18042866 + L1MB1 LINE L1 5443 6167 -1 336 219 88 56 chr9 99819895 99820002 -18042625 - MIR SINE MIR -58 150 29 333 355 64 12 chr9 99820050 99820222 -18042405 - MER5A DNA MER1_type -7 182 2 272 330 213 5 chr9 99820228 99820416 -18042211 - L3 LINE CR1 -4 1573 1347 345 248 136 8 chr9 99820674 99820799 -18041828 + MIR SINE MIR 1 141 -121 3615 38 0 0 chr9 99820800 99821224 -18041403 + L1PA3 LINE L1 5732 6155 0 1690 88 16 28 chr9 99821280 99821531 -18041096 + AluSg SINE Alu 45 292 -18 892 285 76 59 chr9 99822013 99822487 -18040140 + L2 LINE L2 2832 3313 0 254 222 32 32 chr9 99822636 99822699 -18039928 - L2 LINE L2 -821 2493 2431 385 261 0 31 chr9 99822822 99822952 -18039675 + MLT1H LTR MaLR 47 172 -377 2035 231 57 31 chr9 99823239 99823814 -18038813 + MLT1G LTR MaLR 1 590 0 341 276 97 28 chr9 99823844 99823989 -18038638 - MER117 DNA MER1_type -39 158 4 399 287 219 40 chr9 99824171 99824499 -18038128 + L2 LINE L2 2927 3313 0 196 211 0 0 chr9 99825124 99825162 -18037465 + L2 LINE L2 3262 3299 -14 288 301 58 93 chr9 99825191 99825779 -18036848 + L2 LINE L2 2623 3187 -85 * 385 256 60 17 chr9 99825775 99825892 -18036735 + MIR SINE MIR 132 253 -9 853 179 96 4 chr9 99826049 99826278 -18036349 - MER20B DNA MER1_type -18 765 516 1514 266 47 29 chr9 99826400 99826626 -18036001 - MER20B DNA MER1_type -288 495 275 961 90 6 34 chr9 99826626 99826803 -18035824 + (TAGA)n Simple_repeat Simple_repeat 3 174 0 1514 266 47 29 chr9 99826803 99827061 -18035566 - MER20B DNA MER1_type -508 275 2 575 208 111 0 chr9 99827440 99827584 -18035043 + MIR3 SINE MIR 37 196 -12 236 374 92 5 chr9 99828204 99828399 -18034228 - MIR SINE MIR -14 248 37 582 324 157 29 chr9 99828408 99829155 -18033472 - L2 LINE L2 0 3313 2469 2440 97 128 16 chr9 99829489 99829872 -18032755 - MSTA LTR MaLR -2 426 1 233 222 19 0 chr9 99830004 99830058 -18032569 + (CA)n Simple_repeat Simple_repeat 2 56 0 235 297 148 20 chr9 99830839 99830940 -18031687 + MIR SINE MIR 17 130 -78 339 286 59 8 chr9 99830975 99831094 -18031533 - L2 LINE L2 -46 3226 3102 1984 282 160 14 chr9 99831290 99832172 -18030455 + L2 LINE L2 33 1043 -2271 1333 199 206 74 chr9 99832220 99832562 -18030065 + MLT1G1 LTR MaLR 3 411 -156 1383 204 134 43 chr9 99832562 99833023 -18029604 - MLT1D LTR MaLR 0 505 3 1333 199 206 74 chr9 99833023 99833204 -18029423 + MLT1G1 LTR MaLR 411 567 0 3540 241 155 36 chr9 99833204 99834004 -18028623 + L2 LINE L2 1062 1765 -1549 1578 227 58 24 chr9 99834004 99834454 -18028173 - MLT1C LTR MaLR -2 465 1 3540 241 155 36 chr9 99834454 99835029 -18027598 + L2 LINE L2 1765 2601 -713 1057 227 0 5 chr9 99835047 99835245 -18027382 + MER58A DNA MER1_type 28 224 0 560 319 146 14 chr9 99835245 99835857 -18026770 + L2 LINE L2 2605 3311 -2 633 153 0 0 chr9 99836094 99836192 -18026435 + L1MB3 LINE L1 5735 5832 -351 906 86 0 58 chr9 99836192 99836331 -18026296 + AluSg1 SINE Alu 1 131 -178 185 265 118 59 chr9 99836376 99836512 -18026115 - MIR3 SINE MIR -60 148 5 525 289 94 13 chr9 99837606 99837765 -18024862 - MIR3 SINE MIR -20 188 17 478 326 92 5 chr9 99838005 99838189 -18024438 + L3 LINE CR1 1375 1574 -3 242 259 118 24 chr9 99839488 99839573 -18023054 - MIR SINE MIR -86 122 30 875 265 9 23 chr9 99839621 99839836 -18022791 - MIR SINE MIR -3 259 48 268 188 10 168 chr9 99839928 99840029 -18022598 - L2 LINE L2 -181 3091 3007 344 272 61 83 chr9 99840041 99840269 -18022358 - MIR SINE MIR -9 253 31 312 253 188 26 chr9 99840350 99840504 -18022123 + MIR3 SINE MIR 18 196 -12 256 320 89 22 chr9 99840802 99841027 -18021600 + L2 LINE L2 2440 2679 -635 3628 161 60 16 chr9 99841586 99841621 -18021006 + L1MB3 LINE L1 5444 5476 -707 207 0 0 0 chr9 99841621 99841644 -18020983 + (CA)n Simple_repeat Simple_repeat 2 24 0 3628 161 60 16 chr9 99841644 99842310 -18020317 + L1MB3 LINE L1 5476 6176 -7 2368 123 5 80 chr9 99842436 99842884 -18019743 - L1PA13 LINE L1 -7 6156 5743 1413 135 0 4 chr9 99842884 99843150 -18019477 + L1P4 LINE L1 5230 5494 -680 375 277 46 15 chr9 99843164 99843294 -18019333 + L1MC5 LINE L1 7790 7923 -38 1753 115 7 30 chr9 99843318 99843529 -18019098 + L1P4 LINE L1 5476 5681 -484 2325 89 0 0 chr9 99843529 99843831 -18018796 + AluSx SINE Alu 1 302 -10 1753 115 7 30 chr9 99843831 99843889 -18018738 + L1P4 LINE L1 5681 5739 -426 768 238 164 88 chr9 99844408 99844883 -18017744 - MLT1J LTR MaLR 0 511 1 519 324 62 0 chr9 99845144 99845320 -18017307 + MIR SINE MIR 52 238 -24 827 270 31 9 chr9 99845879 99846101 -18016526 - MIR SINE MIR -3 259 33 254 281 163 30 chr9 99846128 99846263 -18016364 + MIR3 SINE MIR 45 197 -11 370 353 50 0 chr9 99847771 99847890 -18014737 - L2 LINE L2 -1 3312 3188 272 234 6 108 chr9 99848307 99848465 -18014162 + MLT1K LTR MaLR 447 588 0 914 276 86 24 chr9 99848708 99849223 -18013404 - L2 LINE L2 0 3313 2762 282 295 49 0 chr9 99849245 99849327 -18013300 - MIR3 SINE MIR -50 158 72 718 284 0 6 chr9 99849536 99849712 -18012915 + MER5A DNA MER1_type 1 175 -14 1871 271 22 7 chr9 99849854 99850379 -18012248 - L1ME3 LINE L1 -15 6147 5583 307 276 0 0 chr9 99850472 99850548 -18012079 + MIR SINE MIR 74 149 -59 1654 152 126 29 chr9 99851287 99851629 -18010998 - THE1C LTR MaLR 0 375 1 318 206 239 0 chr9 99851809 99851901 -18010726 - L2 LINE L2 -7 3306 3193 689 295 124 47 chr9 99852098 99852465 -18010162 - LTR16A LTR ERVL 0 450 43 230 217 50 50 chr9 99852477 99852537 -18010090 + L2 LINE L2 3200 3259 -13 184 311 41 82 chr9 99852640 99852762 -18009865 - L2 LINE L2 -31 3241 3125 379 306 34 27 chr9 99853268 99853415 -18009212 - MIR3 SINE MIR -29 179 32 201 271 57 74 chr9 99853725 99853847 -18008780 - MIR SINE MIR -45 217 98 290 143 16 0 chr9 99854908 99854971 -18007656 + (CA)n Simple_repeat Simple_repeat 1 64 0 304 328 86 0 chr9 99855075 99855203 -18007424 - MIR3 SINE MIR -3 205 67 258 293 207 35 chr9 99855343 99855459 -18007168 + MIR SINE MIR 127 262 0 260 333 49 16 chr9 99855522 99855645 -18006982 - L2 LINE L2 -5 3267 3141 213 262 69 97 chr9 99855793 99855938 -18006689 + MIR3 SINE MIR 48 188 -20 349 260 73 16 chr9 99858108 99858231 -18004396 + MIR3 SINE MIR 69 198 -10 794 219 24 0 chr9 99858347 99858516 -18004111 - MER5B DNA MER1_type -5 173 1 899 143 8 0 chr9 99858767 99858900 -18003727 + AluSq/x SINE Alu 2 135 -177 2241 80 0 17 chr9 99858900 99859231 -18003396 + AluY SINE Alu 1 326 0 819 221 36 36 chr9 99859291 99859486 -18003141 - MIR SINE MIR -34 228 34 929 169 19 0 chr9 99859862 99860022 -18002605 + MER5B DNA MER1_type 15 177 -1 1557 143 0 4 chr9 99860725 99860969 -18001658 - L1PB3 LINE L1 -1 6153 5911 205 227 91 0 chr9 99861670 99861714 -18000913 + L2 LINE L2 3001 3048 -224 227 240 40 0 chr9 99861789 99861839 -18000788 + L2 LINE L2 3262 3313 0 625 180 12 0 chr9 99861841 99862008 -18000619 + (TGGA)n Simple_repeat Simple_repeat 4 172 0 251 298 29 19 chr9 99862523 99862627 -18000000 - MIR SINE MIR 0 262 158 2417 99 0 0 chr9 99862639 99862941 -17999686 - AluSq SINE Alu -6 307 6 395 245 42 42 chr9 99862946 99863089 -17999538 + MIR SINE MIR 119 261 -1 312 302 175 0 chr9 99863090 99863216 -17999411 - MIR SINE MIR -106 156 9 381 236 45 0 chr9 99863523 99863612 -17999015 - MIR SINE MIR -89 173 81 1347 142 14 0 chr9 99863615 99863827 -17998800 - L1PB1 LINE L1 -250 5901 5687 1138 192 9 9 chr9 99863827 99864055 -17998572 + L1PB1 LINE L1 5920 6148 -3 1401 196 25 0 chr9 99864129 99864415 -17998212 + L1 LINE L1 4727 5019 -1127 195 42 0 0 chr9 99864752 99864776 -17997851 + (CA)n Simple_repeat Simple_repeat 1 24 0 206 45 45 45 chr9 99864802 99864846 -17997781 + (TTATA)n Simple_repeat Simple_repeat 5 48 0 623 192 96 14 chr9 99864848 99864994 -17997633 + L1MD2 LINE L1 6173 6330 -29 538 313 116 24 chr9 99865037 99865372 -17997255 + L1ME3A LINE L1 5293 5658 -2150 294 265 127 89 chr9 99865439 99865763 -17996864 + L1ME3A LINE L1 5603 5938 -232 250 254 32 16 chr9 99865980 99866106 -17996521 + (TA)n Simple_repeat Simple_repeat 1 128 0 22547 70 8 8 chr9 99866137 99868045 -17994582 - L1PA6 LINE L1 -1 6153 4244 2349 110 0 3 chr9 99868045 99868355 -17994272 - AluY SINE Alu -2 309 1 22547 70 8 8 chr9 99868355 99870253 -17992374 - L1PA6 LINE L1 -1910 4244 2347 7356 49 1 2 chr9 99870253 99871307 -17991320 + L1PA5 LINE L1 5102 6154 0 11177 119 19 31 chr9 99871320 99873124 -17989503 - L1PA6 LINE L1 -3784 2362 580 666 250 81 37 chr9 99873194 99873330 -17989297 + L1MC4a LINE L1 5616 5745 -2063 2265 119 73 14 chr9 99873330 99873674 -17988953 + THE1B LTR MaLR 1 364 0 666 250 81 37 chr9 99873674 99873833 -17988794 + L1MC4a LINE L1 5745 5924 -1884 219 295 39 0 chr9 99874328 99874406 -17988221 - L2 LINE L2 -220 3052 2972 474 242 75 0 chr9 99874523 99874643 -17987984 - MIR SINE MIR -119 143 15 203 264 209 0 chr9 99874665 99874794 -17987833 - L2 LINE L2 -456 2858 2703 225 0 0 0 chr9 99874836 99874861 -17987766 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 1934 160 27 0 chr9 99875066 99875360 -17987267 + AluJb SINE Alu 1 302 -10 291 212 81 40 chr9 99875693 99875792 -17986835 - MLT1I LTR MaLR 0 409 307 438 307 44 36 chr9 99875906 99876146 -17986481 - MLT1H LTR MaLR -154 257 50 450 279 51 13 chr9 99876208 99876366 -17986261 + MIR SINE MIR 69 232 -30 789 167 102 105 chr9 99876427 99876750 -17985877 - MER5C DNA MER1_type 0 324 3 671 276 144 58 chr9 99876936 99877329 -17985298 - MLT1G1 LTR MaLR 0 595 139 2193 112 0 3 chr9 99877329 99877639 -17984988 + AluSx SINE Alu 1 309 0 671 276 144 58 chr9 99877639 99877792 -17984835 - MLT1G1 LTR MaLR -456 139 1 734 165 73 6 chr9 99878682 99878846 -17983781 + L1MC3 LINE L1 7609 7783 -2 198 0 0 0 chr9 99878849 99878871 -17983756 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 1230 40 0 13 chr9 99878886 99879037 -17983590 - L1PA5 LINE L1 -2 6152 6004 463 313 69 56 chr9 99879339 99879572 -17983055 + MLT1K LTR MaLR 10 245 -343 753 275 52 5 chr9 99879658 99879869 -17982758 + MLT1K LTR MaLR 365 585 -3 22 56 0 0 chr9 99880545 99880581 -17982046 + AT_rich Low_complexity Low_complexity 1 36 0 274 305 47 62 chr9 99880617 99881143 -17981484 - L2 LINE L2 -167 3105 2591 588 268 92 58 chr9 99881655 99882066 -17980561 - MLT1H LTR MaLR 0 549 125 449 198 21 0 chr9 99883159 99883255 -17979372 + L2 LINE L2 3136 3233 -39 198 362 21 11 chr9 99883263 99883357 -17979270 + MIR3 SINE MIR 67 161 -47 591 286 24 33 chr9 99883736 99883946 -17978681 + MIR SINE MIR 22 229 -33 632 201 0 153 chr9 99883948 99884028 -17978599 - MER45A DNA AcHobo -1403 178 142 2151 137 0 9 chr9 99884028 99884343 -17978284 + AluSq SINE Alu 1 312 -1 632 201 0 153 chr9 99884343 99884451 -17978176 - MER45A DNA AcHobo -1439 142 19 2120 127 3 0 chr9 99885157 99885457 -17977170 + AluSx SINE Alu 1 301 -11 272 329 15 66 chr9 99885565 99885702 -17976925 - MLT1I LTR MaLR -123 286 157 420 348 38 9 chr9 99885820 99886030 -17976597 + MIR SINE MIR 34 249 -13 1955 107 0 11 chr9 99886049 99886311 -17976316 - AluSc SINE Alu -18 291 33 340 287 147 0 chr9 99887067 99887224 -17975403 + MIR SINE MIR 55 234 -28 1844 200 85 57 chr9 99887304 99887810 -17974817 - MLT2B1 LTR ERVL 0 520 1 433 276 41 7 chr9 99888144 99888289 -17974338 - MLT1L LTR MaLR 0 615 466 1643 201 10 0 chr9 99888690 99888978 -17973649 + AluJb SINE Alu 1 291 -21 236 163 0 0 chr9 99889602 99889645 -17972982 + L2 LINE L2 3230 3272 0 885 140 0 0 chr9 99889731 99889909 -17972718 + (TTGG)n Simple_repeat Simple_repeat 2 179 0 331 268 268 24 chr9 99890160 99890369 -17972258 + MIR SINE MIR 2 261 -1 2471 68 14 0 chr9 99891929 99892223 -17970404 - AluY SINE Alu -13 298 1 213 294 159 0 chr9 99892248 99892374 -17970253 + L2 LINE L2 3168 3313 0 559 263 53 5 chr9 99892886 99893095 -17969532 + MIR SINE MIR 31 249 -13 280 350 80 0 chr9 99893139 99893239 -17969388 + L2 LINE L2 3159 3266 -6 201 74 0 0 chr9 99893911 99893938 -17968689 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 1607 245 75 37 chr9 99893999 99894534 -17968093 + MLT1H1 LTR MaLR 1 555 0 1905 106 75 31 chr9 99894722 99895014 -17967613 + AluSx SINE Alu 1 305 -7 442 281 30 35 chr9 99895027 99895258 -17967369 + L1ME4a LINE L1 5352 5581 -540 1361 199 103 30 chr9 99895279 99895685 -17966942 + L1ME4a LINE L1 5644 6079 -42 563 268 18 24 chr9 99896205 99896373 -17966254 - MIR3 SINE MIR -4 204 38 268 220 10 90 chr9 99896442 99896542 -17966085 + L2 LINE L2 3222 3313 0 572 184 19 13 chr9 99896542 99896700 -17965927 + (TGGA)n Simple_repeat Simple_repeat 2 160 0 466 259 63 78 chr9 99896710 99896965 -17965662 + MIR SINE MIR 2 252 -10 2110 226 49 88 chr9 99897729 99897810 -17964817 + L1M4 LINE L1 2838 2921 -3225 1607 187 0 57 chr9 99897810 99898141 -17964486 + AluJo SINE Alu 1 312 0 2110 226 49 88 chr9 99898141 99899024 -17963603 + L1M4 LINE L1 2921 3764 -2382 2552 78 0 0 chr9 99899142 99899449 -17963178 - AluSg SINE Alu -3 307 1 200 257 18 18 chr9 99900521 99900583 -17962044 + MIR SINE MIR 91 146 -62 792 25 0 49 chr9 99900650 99900772 -17961855 + (TCTCCC)n Simple_repeat Simple_repeat 2 117 0 7688 53 21 8 chr9 99900772 99902199 -17960428 + SVA Other Other 58 1386 0 356 263 30 141 chr9 99903388 99903568 -17959059 + L2 LINE L2 2836 3034 -238 2199 197 42 9 chr9 99903568 99904020 -17958607 + MLT1C LTR MaLR 1 467 0 356 263 30 141 chr9 99904020 99904330 -17958297 + L2 LINE L2 3034 3272 0 297 228 24 49 chr9 99904683 99904806 -17957821 + L1MC5 LINE L1 7403 7522 -439 443 274 120 50 chr9 99905270 99905529 -17957098 - L2 LINE L2 -384 2930 2654 743 201 166 39 chr9 99905591 99905899 -17956728 + L1MC5 LINE L1 7403 7749 -212 2488 67 0 3 chr9 99905899 99906199 -17956428 - AluY SINE Alu -12 299 1 371 267 0 0 chr9 99906220 99906310 -17956317 + MIR SINE MIR 65 154 -108 198 211 0 6 chr9 99906315 99906353 -17956274 + L2 LINE L2 3216 3294 -19 188 229 0 66 chr9 99907566 99907627 -17955000 + L2 LINE L2 339 395 -2919 209 278 64 7 chr9 99908126 99908238 -17954389 - MIR SINE MIR -62 146 31 2418 181 111 25 chr9 99908488 99909076 -17953551 + MLT1E2 LTR MaLR 1 626 0 340 351 78 35 chr9 99909349 99909771 -17952856 + L1ME LINE L1 2062 2501 -3895 331 335 49 0 chr9 99909809 99909973 -17952654 + L1ME LINE L1 2516 2687 -3528 1416 281 89 49 chr9 99910339 99911352 -17951275 + L1ME LINE L1 3863 4915 -1300 229 191 15 44 chr9 99911355 99911423 -17951204 + (CATATA)n Simple_repeat Simple_repeat 4 69 0 2755 123 17 0 chr9 99911533 99911941 -17950686 - LTR43 LTR ERV1 -80 522 108 341 299 17 45 chr9 99912669 99912846 -17949781 + L1MC5 LINE L1 7746 7917 -44 994 254 80 13 chr9 99912860 99913429 -17949198 + L1ME LINE L1 5102 5702 -533 291 271 201 18 chr9 99913467 99913796 -17948831 - L1MC/D LINE L1 -700 5454 5267 510 299 96 62 chr9 99913821 99914525 -17948102 - L1MC/D LINE L1 -912 5234 4481 585 124 8 108 chr9 99914530 99914659 -17947968 + MLT1C LTR MaLR 1 116 -274 958 174 46 36 chr9 99914669 99914864 -17947763 + MLT1C LTR MaLR 271 467 0 538 268 56 22 chr9 99914921 99915100 -17947527 + MIR SINE MIR 34 218 -44 229 330 184 11 chr9 99915177 99915459 -17947168 - L2 LINE L2 -874 2440 2110 3541 127 31 6 chr9 99915654 99916167 -17946460 - MER1A DNA MER1_type -1 526 1 566 313 20 56 chr9 99916542 99916642 -17945985 + MIR SINE MIR 8 110 -152 1277 196 48 85 chr9 99916642 99917019 -17945608 - MLT1A1 LTR MaLR 0 365 3 566 313 20 56 chr9 99917019 99917167 -17945460 + MIR SINE MIR 110 247 -15 207 283 0 0 chr9 99917382 99917442 -17945185 + MIR SINE MIR 184 243 -19 468 302 113 58 chr9 99918622 99919019 -17943608 + L2 LINE L2 2076 2494 -820 815 275 65 32 chr9 99919632 99919879 -17942748 + MIR SINE MIR 8 262 0 203 263 149 26 chr9 99920110 99920224 -17942403 + MIR SINE MIR 50 177 -85 279 253 22 33 chr9 99920240 99920331 -17942296 + GA-rich Low_complexity Low_complexity 1 90 0 561 288 6 6 chr9 99920777 99920940 -17941687 - MIR SINE MIR -63 199 37 307 311 92 17 chr9 99921162 99921400 -17941227 - L2 LINE L2 -450 2864 2609 295 200 291 0 chr9 99921400 99921510 -17941117 - MIR SINE MIR -12 250 109 734 278 46 51 chr9 99922752 99923082 -17939545 + L2 LINE L2 2804 3222 -91 243 61 0 0 chr9 99923082 99923115 -17939512 + (TG)n Simple_repeat Simple_repeat 2 34 0 734 278 46 51 chr9 99923115 99923207 -17939420 + L2 LINE L2 3222 3313 0 406 332 20 15 chr9 99923716 99923918 -17938709 - L2 LINE L2 -925 2389 2187 191 385 13 13 chr9 99924542 99924620 -17938007 + L3 LINE CR1 1489 1566 -11 1796 148 0 33 chr9 99925613 99925917 -17936710 - AluJb SINE Alu -18 294 1 1309 204 86 28 chr9 99925965 99926289 -17936338 - MER2 DNA MER2_type 0 344 2 256 221 48 39 chr9 99926975 99927079 -17935548 - LTR33A LTR ERVL -11 512 408 206 245 0 0 chr9 99927722 99927775 -17934852 + (TTA)n Simple_repeat Simple_repeat 3 55 0 253 292 0 0 chr9 99928187 99928252 -17934375 + MLT1I LTR MaLR 82 146 -263 317 237 44 97 chr9 99928363 99928477 -17934150 + MLT1G1 LTR MaLR 436 583 -12 449 273 180 0 chr9 99928719 99928869 -17933758 - MIR SINE MIR -13 249 73 2147 119 3 0 chr9 99928881 99929191 -17933436 + AluSq SINE Alu 1 311 -2 208 373 127 0 chr9 99929838 99929972 -17932655 - MIR3 SINE MIR -47 161 11 26 30 0 0 chr9 99930385 99930418 -17932209 + AT_rich Low_complexity Low_complexity 1 33 0 315 222 133 0 chr9 99930483 99930573 -17932054 + L1MC4 LINE L1 6604 6705 -1337 299 277 34 34 chr9 99931475 99931594 -17931033 - MIR SINE MIR -133 129 11 1664 161 0 0 chr9 99931660 99931939 -17930688 + L1MB5 LINE L1 5589 5867 -317 755 119 25 8 chr9 99931962 99932080 -17930547 + L1MC1 LINE L1 6209 6328 -5 2170 144 38 3 chr9 99932092 99932438 -17930189 - MLT1B LTR MaLR 0 390 33 1094 179 150 0 chr9 99932447 99932687 -17929940 + L1MB5 LINE L1 5899 6174 0 249 350 49 33 chr9 99933223 99933406 -17929221 + L2 LINE L2 3082 3267 -5 2514 187 49 26 chr9 99933921 99934229 -17928398 - MER87 LTR ERV1 0 541 215 1093 102 0 6 chr9 99934229 99934386 -17928241 - L1PA13 LINE L1 -6 6157 6002 2514 187 49 26 chr9 99934386 99934606 -17928021 - MER87 LTR ERV1 -326 215 1 184 316 55 83 chr9 99935071 99935324 -17927303 + L2 LINE L2 2851 3096 -176 244 262 19 10 chr9 99935491 99935594 -17927033 + GA-rich Low_complexity Low_complexity 1 104 0 258 271 112 65 chr9 99936222 99936329 -17926298 - MIR SINE MIR -75 133 6 211 286 0 0 chr9 99936465 99936507 -17926120 + L2 LINE L2 3211 3252 -20 232 322 59 25 chr9 99936532 99936650 -17925977 + MIR SINE MIR 16 137 -71 217 288 75 0 chr9 99936693 99936773 -17925854 - MIR SINE MIR -5 257 172 2792 171 106 7 chr9 99937412 99938008 -17924619 + L1MB4 LINE L1 5526 6180 0 2376 71 0 3 chr9 99938740 99939050 -17923577 + AluY SINE Alu 1 309 -2 1878 187 50 84 chr9 99939777 99940208 -17922419 - MLT1D LTR MaLR 0 505 94 1906 137 3 0 chr9 99940208 99940500 -17922127 + AluSx SINE Alu 3 295 -17 1878 187 50 84 chr9 99940500 99940591 -17922036 - MLT1D LTR MaLR -411 94 1 416 331 0 15 chr9 99941038 99941168 -17921459 - MIR SINE MIR -100 162 35 326 372 37 40 chr9 99941286 99941582 -17921045 - L2 LINE L2 -123 3149 2855 873 287 25 29 chr9 99941718 99941962 -17920665 - MLT1I LTR MaLR -69 340 98 22 0 0 0 chr9 99942269 99942291 -17920336 + AT_rich Low_complexity Low_complexity 1 22 0 253 186 53 177 chr9 99942819 99942885 -17919742 + MER5A DNA MER1_type 8 56 -133 2435 69 0 0 chr9 99942885 99943189 -17919438 + AluSc SINE Alu 1 304 -5 253 186 53 177 chr9 99943189 99943235 -17919392 + MER5A DNA MER1_type 56 106 -83 4920 88 9 18 chr9 99943264 99943786 -17918841 - L1PA13 LINE L1 -5 6158 5642 3083 108 5 9 chr9 99943786 99944214 -17918413 + MSTA LTR MaLR 3 428 0 4920 88 9 18 chr9 99944214 99944377 -17918250 - L1PA13 LINE L1 -521 5642 5479 645 279 11 16 chr9 99944438 99944621 -17918006 + MER5A DNA MER1_type 8 189 0 280 306 38 18 chr9 99944869 99944986 -17917641 + MIR SINE MIR 16 135 -73 220 247 118 36 chr9 99946093 99946204 -17916423 + MIR SINE MIR 35 152 -76 2164 117 3 0 chr9 99946356 99946665 -17915962 - AluSx SINE Alu -2 310 1 522 299 128 43 chr9 99946788 99947069 -17915558 - L2 LINE L2 -49 3223 2919 192 389 16 24 chr9 99947159 99947285 -17915342 - L2 LINE L2 -575 2739 2615 813 199 18 28 chr9 99947953 99948154 -17914473 - MIR SINE MIR -20 242 46 280 285 100 7 chr9 99948237 99948351 -17914276 + MIR SINE MIR 30 152 -63 308 320 22 17 chr9 99949167 99949348 -17913279 - L1ME LINE L1 -308 5813 5632 1576 168 89 20 chr9 99949408 99949796 -17912831 + L1MB8 LINE L1 5769 6178 0 449 252 77 47 chr9 99950533 99950702 -17911925 + MIR SINE MIR 25 192 -55 301 264 40 81 chr9 99950724 99950872 -17911755 + MER5A DNA MER1_type 24 165 -24 * 309 311 13 29 chr9 99950730 99950896 -17911731 - MER5A DNA MER1_type -16 167 2 266 244 252 22 chr9 99950995 99951130 -17911497 + MIR SINE MIR 96 261 -1 2092 109 3 16 chr9 99951140 99951453 -17911174 - AluSg SINE Alu -1 309 1 606 74 0 0 chr9 99951464 99951545 -17911082 - tRNA-Leu-CTG tRNA tRNA -5 81 1 351 65 0 0 chr9 99951816 99951862 -17910765 + (CA)n Simple_repeat Simple_repeat 1 46 0 432 289 78 29 chr9 99951862 99952098 -17910529 - L1MC4a LINE L1 -206 5915 5678 366 303 174 7 chr9 99952120 99952275 -17910352 - MIR SINE MIR -19 243 63 889 276 152 16 chr9 99952378 99952747 -17909880 + MLT1H LTR MaLR 131 549 0 227 281 94 10 chr9 99952983 99953079 -17909548 - MIR SINE MIR -68 140 37 221 289 13 26 chr9 99954369 99954445 -17908182 + MIR SINE MIR 118 192 -70 602 173 93 13 chr9 99954689 99954839 -17907788 - MIR SINE MIR -2 260 99 366 302 167 5 chr9 99956357 99956579 -17906048 + L2 LINE L2 2094 2351 -963 395 226 198 0 chr9 99956595 99956701 -17905926 - MIR SINE MIR -13 249 123 1823 168 0 0 chr9 99956713 99957004 -17905623 - AluSx SINE Alu -21 291 1 1577 180 0 27 chr9 99957322 99957617 -17905010 + AluJo SINE Alu 5 291 -21 1944 124 7 3 chr9 99957623 99957921 -17904706 + AluSx SINE Alu 1 299 -13 186 333 32 16 chr9 99958426 99958489 -17904138 - L2 LINE L2 -4 3268 3205 553 250 7 40 chr9 99958773 99958925 -17903702 + MLT1A2 LTR MaLR 1 147 -227 644 176 0 0 chr9 99958937 99959045 -17903582 - AluJb SINE Alu -22 290 183 2062 129 36 33 chr9 99959050 99959413 -17903214 - THE1C LTR MaLR -11 364 1 339 174 72 0 chr9 99959413 99959469 -17903158 - AluSp SINE Alu -113 190 130 892 149 0 8 chr9 99959469 99959603 -17903024 - AluJo/FLAM SINE Alu -169 133 1 960 179 46 71 chr9 99959605 99959845 -17902782 + MLT1A2 LTR MaLR 141 374 0 188 258 97 0 chr9 99959852 99959914 -17902713 + L2 LINE L2 3156 3223 -49 282 56 0 0 chr9 99960368 99960404 -17902223 + (GA)n Simple_repeat Simple_repeat 1 36 0 226 279 25 57 chr9 99960462 99960584 -17902043 - L2 LINE L2 -49 3264 3147 527 229 166 19 chr9 99960687 99960844 -17901783 + MER5A DNA MER1_type 9 188 -1 3563 105 4 52 chr9 99960984 99961030 -17901597 + L1PA10 LINE L1 5643 5690 -478 2351 87 0 0 chr9 99961030 99961341 -17901286 + AluY SINE Alu 1 311 0 3563 105 4 52 chr9 99961341 99961847 -17900780 + L1PA10 LINE L1 5690 6168 0 2109 122 87 14 chr9 99961847 99962192 -17900435 - MSTA LTR MaLR -58 370 1 271 203 27 40 chr9 99962193 99962267 -17900360 + L1MC5 LINE L1 7840 7912 -49 2195 109 3 3 chr9 99962601 99962895 -17899732 + AluSq SINE Alu 14 307 -6 2099 187 57 39 chr9 99962981 99963473 -17899154 - MLT1D LTR MaLR -4 501 1 594 170 1 0 chr9 99963515 99963627 -17899000 + L1MB5 LINE L1 5555 5667 -511 2840 28 0 12 chr9 99963627 99963948 -17898679 + AluYb8 SINE Alu 1 317 -1 1082 147 0 0 chr9 99963960 99964110 -17898517 + AluJb SINE Alu 156 305 -7 2612 184 4 2 chr9 99964111 99964589 -17898038 + L1MB5 LINE L1 5660 6138 -36 504 235 62 19 chr9 99964892 99965054 -17897573 + HAL1b LINE L1 747 915 -433 274 237 74 30 chr9 99965110 99965245 -17897382 + HAL1b LINE L1 793 933 -415 344 286 31 22 chr9 99965327 99965552 -17897075 + MLT1K LTR MaLR 104 398 -190 1856 168 0 3 chr9 99965643 99965928 -17896699 - AluJb SINE Alu -23 289 6 205 189 0 0 chr9 99966596 99966633 -17895994 + CT-rich Low_complexity Low_complexity 2 38 0 2211 106 0 34 chr9 99966700 99967021 -17895606 + AluSg SINE Alu 1 310 0 723 219 152 75 chr9 99967200 99967575 -17895052 - L1ME4a LINE L1 0 6121 5718 415 320 107 7 chr9 99968259 99968409 -17894218 + MIR3 SINE MIR 23 187 -21 646 246 18 0 chr9 99968714 99968885 -17893742 + L1MC4 LINE L1 6912 7085 -957 1028 231 132 13 chr9 99968898 99969270 -17893357 + L1MC4 LINE L1 7238 7653 -389 279 206 27 27 chr9 99969284 99969357 -17893270 + L1MC4 LINE L1 7587 7659 -383 647 215 102 11 chr9 99969436 99969613 -17893014 + L1MC4 LINE L1 7586 7778 -264 956 209 221 18 chr9 99969625 99970055 -17892572 + MLT1F1 LTR MaLR 1 567 0 356 243 54 0 chr9 99970062 99970173 -17892454 + L1MC4 LINE L1 7786 7902 -140 288 183 0 28 chr9 99970175 99970246 -17892381 + L1MD3 LINE L1 7927 7995 0 199 333 12 0 chr9 99970371 99970452 -17892175 + L2 LINE L2 2723 2804 -510 364 313 168 20 chr9 99970547 99970844 -17891783 + L2 LINE L2 2909 3249 -23 22 35 0 0 chr9 99971160 99971189 -17891438 + AT_rich Low_complexity Low_complexity 1 29 0 277 240 171 0 chr9 99971531 99971660 -17890967 - MIR SINE MIR -80 182 32 1835 136 17 36 chr9 99972042 99972343 -17890284 + AluJb SINE Alu 14 308 -4 524 247 156 61 chr9 99973192 99973552 -17889075 - L2 LINE L2 -75 3238 2845 1824 166 151 15 chr9 99973830 99974241 -17888386 - MLT1C LTR MaLR 0 467 1 369 309 74 12 chr9 99975080 99975242 -17887385 + MIR SINE MIR 37 208 -54 187 180 280 0 chr9 99975797 99975847 -17886780 + L2 LINE L2 3203 3266 -6 318 352 43 12 chr9 99975937 99976099 -17886528 + MER5B DNA MER1_type 7 173 -5 471 272 56 39 chr9 99976115 99976295 -17886332 + MIR3 SINE MIR 9 191 -17 202 266 47 0 chr9 99976520 99976584 -17886043 + MIR3 SINE MIR 112 178 -30 510 322 75 59 chr9 99976995 99977217 -17885410 - L3 LINE CR1 -38 1539 1322 2179 184 55 31 chr9 99977217 99977707 -17884920 - MLT1D LTR MaLR -3 502 1 510 322 75 59 chr9 99977707 99978115 -17884512 - L3 LINE CR1 -255 1322 899 220 264 104 28 chr9 99978177 99978283 -17884344 - L2 LINE L2 -239 3033 2920 309 258 47 68 chr9 99978449 99978639 -17883988 - L2 LINE L2 -569 2745 2560 207 0 0 0 chr9 99978643 99978666 -17883961 + (GGAGA)n Simple_repeat Simple_repeat 1 23 0 202 228 0 70 chr9 99978809 99978866 -17883761 - MIR SINE MIR -113 149 97 599 561 0 0 chr9 99979554 99979734 -17882893 + (CA)n Simple_repeat Simple_repeat 1 180 0 440 274 61 69 chr9 99980004 99980249 -17882378 + L2 LINE L2 2931 3173 -99 243 214 162 32 chr9 99981097 99981224 -17881403 + MIR SINE MIR 41 185 -67 255 301 54 0 chr9 99981360 99981453 -17881174 - L2 LINE L2 -16 3297 3200 479 286 148 33 chr9 99981633 99982052 -17880575 - L2 LINE L2 -446 2868 2402 202 238 0 0 chr9 99982675 99982717 -17879910 + MIR3 SINE MIR 119 160 -48 1644 173 40 3 chr9 99983609 99983910 -17878717 + LTR32 LTR ERVL 20 331 -140 849 167 6 13 chr9 99983973 99984129 -17878498 + LTR32 LTR ERVL 317 471 0 329 170 0 0 chr9 99985985 99986038 -17876589 - L2 LINE L2 0 3313 3261 290 242 183 42 chr9 99988064 99988184 -17874443 - MIR SINE MIR -70 192 56 273 212 96 62 chr9 99988736 99988851 -17873776 - MIR SINE MIR -101 161 43 244 293 131 10 chr9 99989787 99989886 -17872741 + L2 LINE L2 3139 3249 -23 186 351 52 26 chr9 99990243 99990320 -17872307 - L2 LINE L2 -127 3145 3067 * 195 260 0 0 chr9 99990297 99990347 -17872280 + MIR SINE MIR 86 135 -127 234 313 98 48 chr9 99990536 99990899 -17871728 + L2 LINE L2 2828 3313 0 727 261 139 33 chr9 99991206 99991688 -17870939 + L1MC4a LINE L1 5314 5846 -1962 215 256 108 60 chr9 99992814 99992983 -17869644 + MIR SINE MIR 30 197 -17 250 269 65 37 chr9 99993016 99993124 -17869503 + L2 LINE L2 2985 3095 -177 443 325 13 19 chr9 99993426 99993583 -17869044 + MIR SINE MIR 50 205 -57 736 228 39 119 chr9 99993731 99993949 -17868678 - L1MC5 LINE L1 -32 7929 7695 811 152 8 23 chr9 99993949 99994081 -17868546 - FLAM_C SINE Alu -3 130 1 736 228 39 119 chr9 99994081 99994322 -17868305 - L1MC5 LINE L1 -266 7695 7509 880 159 118 6 chr9 99994322 99994492 -17868135 - MER5A DNA MER1_type 0 189 1 736 228 39 119 chr9 99994492 99994519 -17868108 - L1MC5 LINE L1 -452 7509 7481 791 279 90 26 chr9 99994531 99995237 -17867390 - L1MC5 LINE L1 -987 6827 6053 21 0 0 0 chr9 99995273 99995294 -17867333 + AT_rich Low_complexity Low_complexity 1 21 0 427 324 120 36 chr9 99995948 99996257 -17866370 - L2 LINE L2 -76 3196 2862 238 348 54 0 chr9 99996973 99997065 -17865562 + MIR SINE MIR 50 146 -62 1447 171 8 8 chr9 99997946 99998191 -17864436 + AluJo SINE Alu 68 312 0 2185 113 3 0 chr9 99998371 99998664 -17863963 + AluSx SINE Alu 1 294 -18 2013 133 13 32 chr9 99998679 99998995 -17863632 + AluJb SINE Alu 2 311 -1 292 250 11 34 chr9 99999041 99999129 -17863498 + L1ME LINE L1 5553 5638 -483 302 320 71 19 chr9 100001545 100001739 -17860888 - MIR3 SINE MIR -50 212 8 458 294 27 7 chr9 100002982 100003128 -17859499 + MIR3 SINE MIR 19 167 -41 23 33 0 0 chr9 100004366 100004396 -17858231 + AT_rich Low_complexity Low_complexity 1 30 0 247 273 18 0 chr9 100004505 100004560 -17858067 + L2 LINE L2 3255 3310 -3 429 345 53 20 chr9 100004592 100004838 -17857789 - MIR SINE MIR -1 261 8 531 230 212 23 chr9 100005298 100005772 -17856855 + L2 LINE L2 2723 3283 -30 297 291 40 38 chr9 100006458 100006614 -17856013 + MIR SINE MIR 14 171 -37 476 259 217 0 chr9 100006741 100006884 -17855743 - MIR SINE MIR -55 207 34 410 299 115 76 chr9 100006917 100007325 -17855302 + L2 LINE L2 2849 3272 0 427 278 80 7 chr9 100007401 100007552 -17855075 + MIR SINE MIR 51 212 -50 337 294 113 61 chr9 100007738 100007969 -17854658 - MIR SINE MIR 0 262 20 475 345 76 3 chr9 100008415 100008705 -17853922 + L2 LINE L2 2254 2564 -750 503 244 76 28 chr9 100009069 100009405 -17853222 + MLT1L LTR MaLR 196 615 0 343 261 52 61 chr9 100009589 100009704 -17852923 + MIR SINE MIR 27 140 -122 238 20 98 0 chr9 100010478 100010529 -17852098 + GA-rich Low_complexity Low_complexity 2 57 0 299 298 197 27 chr9 100010813 100011001 -17851626 - MIR SINE MIR -23 239 20 252 269 111 18 chr9 100011040 100011211 -17851416 + L1MC4a LINE L1 5818 6004 -1804 209 281 11 56 chr9 100011598 100011687 -17850940 - L2 LINE L2 -12 3260 3176 262 277 73 68 chr9 100012367 100012573 -17850054 + L1ME4a LINE L1 5542 5748 -373 1803 159 70 26 chr9 100012700 100013083 -17849544 - MER21B LTR ERV1 -11 852 453 323 282 57 105 chr9 100013087 100013296 -17849331 + L1ME4a LINE L1 5901 6099 -22 630 304 62 11 chr9 100014465 100014738 -17847889 + L1ME4a LINE L1 5601 5887 -234 1742 182 57 20 chr9 100015619 100015971 -17846656 + MLT1A1 LTR MaLR 1 365 0 359 250 90 14 chr9 100016963 100017107 -17845520 - MIR SINE MIR -80 182 28 182 309 93 10 chr9 100018379 100018476 -17844151 - L2 LINE L2 0 3272 3168 743 254 52 35 chr9 100019822 100020109 -17842518 - L1ME4a LINE L1 -218 5903 5612 214 317 50 10 chr9 100020730 100020831 -17841796 - MIR SINE MIR -52 210 106 1977 136 24 10 chr9 100021371 100021666 -17840961 - AluSx SINE Alu -13 299 1 213 306 62 77 chr9 100022551 100022760 -17839867 - L2 LINE L2 -49 3223 3018 4568 153 38 41 chr9 100022929 100023807 -17838820 - MER4D LTR ERV1 0 862 5 1293 91 162 0 chr9 100023913 100024110 -17838517 + MER30 DNA MER1_type 1 229 -1 234 261 261 14 chr9 100024118 100024256 -17838371 - MIR SINE MIR -71 191 20 23072 29 0 0 chr9 100024524 100028013 -17834614 + L1PA3 LINE L1 2670 6155 0 474 269 249 5 chr9 100028062 100028263 -17834364 + MIR SINE MIR 6 255 -7 600 232 47 26 chr9 100028781 100028971 -17833656 + L1ME LINE L1 5629 5822 -299 511 291 59 32 chr9 100030114 100030334 -17832293 - MIR SINE MIR -28 234 9 239 247 65 32 chr9 100030358 100030451 -17832176 + MIR SINE MIR 107 202 -60 261 346 0 0 chr9 100030494 100030595 -17832032 + MIR SINE MIR 39 139 -69 838 269 92 56 chr9 100030625 100031375 -17831252 - L2 LINE L2 0 3313 2546 549 241 80 66 chr9 100031397 100031671 -17830956 - L2 LINE L2 -1234 2080 1803 3835 219 73 51 chr9 100031717 100032208 -17830419 + L1MC4 LINE L1 6118 6597 -1445 288 0 0 0 chr9 100032208 100032240 -17830387 + (CA)n Simple_repeat Simple_repeat 2 33 0 3835 219 73 51 chr9 100032240 100033494 -17829133 + L1MC4 LINE L1 6597 7992 -50 26 0 0 0 chr9 100033504 100033530 -17829097 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr9 100033667 100033692 -17828935 + AT_rich Low_complexity Low_complexity 1 25 0 228 266 129 16 chr9 100034709 100034833 -17827794 - MIR SINE MIR -5 257 120 353 314 23 35 chr9 100035235 100035407 -17827220 + MIR SINE MIR 23 192 -70 184 216 20 0 chr9 100037139 100037190 -17825437 + L2 LINE L2 2922 2973 -341 220 314 78 10 chr9 100037416 100037518 -17825109 + L2 LINE L2 3141 3249 -23 182 246 14 72 chr9 100037675 100037744 -17824883 - L3b LINE CR1 -192 1391 1327 189 244 81 23 chr9 100037794 100037880 -17824747 + MIR SINE MIR 89 179 -83 333 262 134 44 chr9 100037998 100038199 -17824428 + MIR SINE MIR 34 235 -27 221 341 68 0 chr9 100038573 100038661 -17823966 + L2 LINE L2 3164 3257 -15 423 288 16 0 chr9 100038869 100038994 -17823633 - MIR SINE MIR -102 160 34 226 292 115 0 chr9 100040011 100040107 -17822520 + L2 LINE L2 3126 3232 -40 425 260 89 18 chr9 100040165 100040334 -17822293 + MIR SINE MIR 66 246 -16 879 124 8 8 chr9 100040874 100041003 -17821624 + AluJo SINE Alu 7 135 -177 390 311 49 0 chr9 100041145 100041267 -17821360 + L2 LINE L2 3144 3271 -1 382 373 37 0 chr9 100041475 100041692 -17820935 + MIR SINE MIR 17 241 -21 847 296 45 29 chr9 100041731 100042106 -17820521 + L2 LINE L2 226 606 -2708 1523 258 159 19 chr9 100042141 100042762 -17819865 + L2 LINE L2 1741 2448 -866 1183 196 27 9 chr9 100042776 100042995 -17819632 - MER58A DNA MER1_type 0 224 2 1843 98 109 0 chr9 100042997 100043262 -17819365 - AluSq SINE Alu -19 294 1 645 249 97 43 chr9 100043275 100043833 -17818794 + L2 LINE L2 2699 3295 -18 623 313 74 70 chr9 100045323 100046285 -17816342 + L2 LINE L2 2301 3267 -5 4788 140 52 33 chr9 100046367 100047268 -17815359 + L1MB8 LINE L1 5254 6171 -7 246 267 164 26 chr9 100047485 100047601 -17815026 - MIR SINE MIR -109 153 22 209 231 0 0 chr9 100048021 100048060 -17814567 - L2 LINE L2 -24 3248 3210 22 35 0 0 chr9 100048644 100048673 -17813954 + AT_rich Low_complexity Low_complexity 1 29 0 827 197 53 61 chr9 100049564 100049792 -17812835 - MIR SINE MIR -30 232 7 1676 188 7 16 chr9 100049845 100050153 -17812474 - AluJo SINE Alu -7 305 1 323 353 25 20 chr9 100050823 100050982 -17811645 + MIR SINE MIR 32 194 -68 195 0 86 0 chr9 100050982 100051017 -17811610 + (TA)n Simple_repeat Simple_repeat 1 38 0 323 353 25 20 chr9 100051017 100051061 -17811566 + MIR SINE MIR 194 236 -26 297 0 0 0 chr9 100051369 100051402 -17811225 + (TC)n Simple_repeat Simple_repeat 2 34 0 225 208 0 0 chr9 100052185 100052233 -17810394 + L1ME LINE L1 5771 5818 -303 206 231 0 19 chr9 100052365 100052417 -17810210 + GA-rich Low_complexity Low_complexity 3 53 0 595 303 132 25 chr9 100053768 100054131 -17808496 + LTR16C LTR ERVL 90 491 0 180 0 0 0 chr9 100054502 100054522 -17808105 + (A)n Simple_repeat Simple_repeat 1 20 0 1753 167 20 7 chr9 100054590 100054883 -17807744 + AluJb SINE Alu 1 297 -15 198 391 81 0 chr9 100105200 100105287 -17757340 + L2 LINE L2 3116 3209 -63 182 306 48 16 chr9 100105356 100105418 -17757209 - MIR SINE MIR -126 82 19 481 217 259 6 chr9 100105625 100105791 -17756836 + MIR SINE MIR 7 214 -48 460 317 8 0 chr9 100106343 100106466 -17756161 + MIR SINE MIR 46 169 -93 332 236 170 3 chr9 100106806 100106931 -17755696 - MIR SINE MIR -64 144 38 355 228 30 20 chr9 100108112 100108213 -17754414 + Charlie8 DNA MER1_type 93 194 -2223 22 0 0 0 chr9 100108288 100108310 -17754317 + AT_rich Low_complexity Low_complexity 1 22 0 213 225 50 50 chr9 100108608 100108688 -17753939 + MIR SINE MIR 45 124 -84 633 309 58 27 chr9 100108699 100108912 -17753715 - L2 LINE L2 -518 2796 2572 2248 201 74 8 chr9 100108912 100109385 -17753242 - MLT1D LTR MaLR -1 504 1 633 309 58 27 chr9 100109385 100109430 -17753197 - L2 LINE L2 -742 2572 2530 450 196 0 0 chr9 100109593 100109685 -17752942 + (TA)n Simple_repeat Simple_repeat 1 92 0 414 333 11 27 chr9 100109688 100109874 -17752753 + MIR SINE MIR 42 224 -38 588 292 66 25 chr9 100110186 100110429 -17752198 - MIR SINE MIR -7 255 3 406 240 173 0 chr9 100110589 100110693 -17751934 - MIR SINE MIR -62 200 79 2221 119 0 7 chr9 100110694 100111004 -17751623 - AluSg SINE Alu -2 308 1 300 319 53 0 chr9 100111063 100111172 -17751455 - MIR3 SINE MIR -41 167 72 * 359 299 137 38 chr9 100111169 100111380 -17751247 + MIR SINE MIR 8 239 -23 573 310 67 4 chr9 100112567 100112806 -17749821 + MIR SINE MIR 8 261 -1 484 125 0 12 chr9 100112942 100113022 -17749605 - MADE1 DNA Mariner -1 79 1 325 326 9 74 chr9 100113128 100113343 -17749284 + MIR SINE MIR 20 220 -42 22 35 0 0 chr9 100113372 100113401 -17749226 + AT_rich Low_complexity Low_complexity 1 29 0 390 182 23 23 chr9 100113543 100113631 -17748996 - MER117 DNA MER1_type -49 148 61 374 285 174 7 chr9 100113713 100113857 -17748770 + MIR SINE MIR 13 180 -82 467 316 75 16 chr9 100114073 100114260 -17748367 + MIR SINE MIR 25 222 -40 263 244 24 24 chr9 100114680 100114762 -17747865 - MER103 DNA DNA -23 143 62 1590 238 32 15 chr9 100115021 100115429 -17747198 + MLT1C LTR MaLR 1 415 -52 705 303 174 23 chr9 100115469 100116538 -17746089 + L2 LINE L2 2041 3298 -15 38 0 0 0 chr9 100116544 100116582 -17746045 + AT_rich Low_complexity Low_complexity 1 38 0 614 322 62 0 chr9 100116930 100117172 -17745455 - MIR SINE MIR 0 262 6 193 333 0 13 chr9 100117223 100117298 -17745329 - MIR SINE MIR -108 154 81 443 285 100 46 chr9 100118338 100118598 -17744029 - MLT1E LTR MaLR -313 280 7 246 156 0 0 chr9 100118608 100118653 -17743974 + CT-rich Low_complexity Low_complexity 3 47 0 241 307 242 13 chr9 100118979 100119132 -17743495 + MIR SINE MIR 4 191 -71 352 294 42 0 chr9 100119287 100119423 -17743204 - MIR SINE MIR -68 140 31 205 293 37 0 chr9 100119908 100119990 -17742637 + L3 LINE CR1 1374 1458 -119 603 143 6 9 chr9 100120134 100120249 -17742378 - L1MA9 LINE L1 -3 6288 6176 393 300 25 8 chr9 100120266 100120386 -17742241 + MER5A DNA MER1_type 65 186 -3 276 302 129 0 chr9 100120693 100120809 -17741818 - L2 LINE L2 0 3272 3142 272 278 21 21 chr9 100121028 100121125 -17741502 + MIR3 SINE MIR 69 165 -43 366 103 35 17 chr9 100121179 100121237 -17741390 + MER20 DNA MER1_type 19 77 -142 422 208 8 58 chr9 100121665 100121785 -17740842 - L2 LINE L2 0 3313 3200 325 216 64 96 chr9 100122900 100123025 -17739602 + MER61B LTR ERV1 13 133 -292 351 188 14 0 chr9 100123031 100123100 -17739527 + LTR1 LTR ERV1 121 190 -595 * 2005 163 192 108 chr9 100123070 100123727 -17738900 + LTR28 LTR ERV1 309 1020 0 1256 171 145 33 chr9 100124108 100124412 -17738215 + MER58B DNA MER1_type 1 338 -3 225 333 8 32 chr9 100125676 100125766 -17736861 - MIR SINE MIR -13 249 161 2258 124 16 36 chr9 100125766 100126152 -17736475 - MER83B LTR ERV1 0 378 1 225 333 8 32 chr9 100126152 100126187 -17736440 - MIR SINE MIR -101 161 127 231 226 0 0 chr9 100126888 100126941 -17735686 - MIR3 SINE MIR -3 205 153 469 287 94 11 chr9 100126941 100127122 -17735505 + MER117 DNA MER1_type 1 196 -1 380 372 0 0 chr9 100127128 100127257 -17735370 - MIR3 SINE MIR -49 159 31 2184 178 40 85 chr9 100128159 100128738 -17733889 + MLT2B3 LTR ERVL 2 554 0 758 311 16 0 chr9 100128853 100129110 -17733517 + MIR SINE MIR 1 261 -1 273 326 62 16 chr9 100129151 100129280 -17733347 + L2 LINE L2 3138 3272 0 242 265 19 161 chr9 100129982 100130299 -17732328 - L2 LINE L2 -66 3206 2935 222 344 10 0 chr9 100130305 100130401 -17732226 + MIR SINE MIR 165 261 -1 244 301 58 19 chr9 100131169 100131272 -17731355 + L2 LINE L2 3116 3222 -50 2206 185 60 58 chr9 100131274 100131777 -17730850 + MLT1D LTR MaLR 2 505 0 2785 82 3 0 chr9 100132141 100132493 -17730134 + THE1A LTR MaLR 3 355 0 11987 92 2 2 chr9 100132493 100134072 -17728555 + THE1A-int LTR MaLR 1 1580 0 2719 90 3 0 chr9 100134072 100134426 -17728201 + THE1A LTR MaLR 1 355 0 316 227 62 21 chr9 100134849 100134946 -17727681 + MER5A DNA MER1_type 87 187 -2 282 320 40 0 chr9 100134971 100135071 -17727556 - MIR SINE MIR -71 137 34 230 239 34 45 chr9 100135176 100135264 -17727363 - MIR SINE MIR -76 186 100 253 364 123 12 chr9 100136514 100136767 -17725860 + L2 LINE L2 3032 3312 -1 231 88 0 0 chr9 100136768 100136802 -17725825 + (TGAA)n Simple_repeat Simple_repeat 2 35 0 243 146 21 0 chr9 100137048 100137096 -17725531 + L1MB7 LINE L1 6131 6179 -5 581 260 57 16 chr9 100137117 100137309 -17725318 - L2 LINE L2 -2647 667 468 843 303 80 5 chr9 100137580 100137953 -17724674 - L2 LINE L2 -2911 403 3 201 74 0 0 chr9 100138005 100138032 -17724595 + (T)n Simple_repeat Simple_repeat 1 27 0 354 123 0 0 chr9 100138705 100138762 -17723865 + (GGA)n Simple_repeat Simple_repeat 2 58 0 375 305 95 20 chr9 100138862 100139062 -17723565 + MIR SINE MIR 48 262 0 208 294 0 29 chr9 100139140 100139208 -17723419 + GA-rich Low_complexity Low_complexity 2 67 0 239 280 53 0 chr9 100139288 100139363 -17723264 + MIR SINE MIR 95 173 -89 181 220 203 0 chr9 100139467 100139526 -17723101 + MIR SINE MIR 173 243 -19 23 0 0 0 chr9 100140004 100140027 -17722600 + AT_rich Low_complexity Low_complexity 1 23 0 1115 266 91 26 chr9 100140527 100140944 -17721683 + LTR16A LTR ERVL 7 450 0 308 333 41 0 chr9 100141022 100141145 -17721482 - MIR SINE MIR -87 175 48 207 0 0 0 chr9 100141696 100141719 -17720908 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 761 217 60 5 chr9 100142485 100142669 -17719958 - L1MB5 LINE L1 -2 6172 5979 477 235 87 13 chr9 100142861 100143010 -17719617 - MIR SINE MIR 0 262 103 184 299 26 0 chr9 100144333 100144410 -17718217 - MIR SINE MIR -4 258 180 421 277 138 18 chr9 100144522 100144746 -17717881 - MIR SINE MIR -6 256 6 732 129 0 0 chr9 100146206 100146330 -17716297 + (TCCA)n Simple_repeat Simple_repeat 2 125 0 260 275 201 7 chr9 100146543 100146692 -17715935 + MIR SINE MIR 84 261 -1 226 368 53 15 chr9 100146744 100146877 -17715750 + L2 LINE L2 2728 2865 -449 236 224 20 0 chr9 100146910 100146959 -17715668 + MLT1I LTR MaLR 1 50 -359 * 366 300 73 59 chr9 100146930 100147077 -17715550 + MLT1I LTR MaLR 187 339 -70 1425 240 22 16 chr9 100147077 100147440 -17715187 + MLT1A1 LTR MaLR 1 365 0 366 300 73 59 chr9 100147440 100147512 -17715115 + MLT1I LTR MaLR 339 409 0 570 297 112 36 chr9 100147536 100147893 -17714734 + L2 LINE L2 2929 3312 -1 684 106 75 12 chr9 100147901 100148144 -17714483 + GA-rich Low_complexity Low_complexity 1 258 0 238 391 21 12 chr9 100148947 100149255 -17713372 - L2 LINE L2 -227 3045 2737 327 25 0 0 chr9 100149260 100149300 -17713327 + (GA)n Simple_repeat Simple_repeat 2 41 0 248 0 31 0 chr9 100149299 100149331 -17713296 + (TG)n Simple_repeat Simple_repeat 1 33 0 * 720 74 0 0 chr9 100149745 100149853 -17712774 + (TTCC)n Simple_repeat Simple_repeat 3 110 0 533 315 91 0 chr9 100150198 100150395 -17712232 + MIR SINE MIR 48 262 0 491 289 15 30 chr9 100150446 100150643 -17711984 + MER117 DNA MER1_type 1 194 -3 589 252 39 101 chr9 100152345 100152691 -17709936 + MLT1H LTR MaLR 109 549 0 477 161 11 0 chr9 100153306 100153393 -17709234 - L1MB4 LINE L1 -1 6179 6092 335 269 82 0 chr9 100153413 100153547 -17709080 - MIR SINE MIR -50 212 68 421 286 138 70 chr9 100153708 100154194 -17708433 + MLT1H LTR MaLR 31 549 0 392 268 79 0 chr9 100154423 100154550 -17708077 - L3 LINE CR1 -73 1504 1368 388 329 98 0 chr9 100154734 100154940 -17707687 - MIR SINE MIR -1 261 37 206 260 0 0 chr9 100154966 100155016 -17707611 + (TAA)n Simple_repeat Simple_repeat 1 50 0 303 261 85 8 chr9 100155026 100155156 -17707471 - MIR SINE MIR -2 260 121 223 343 0 0 chr9 100155212 100155279 -17707348 + L3 LINE CR1 1425 1491 -86 213 250 12 50 chr9 100155342 100155422 -17707205 + C-rich Low_complexity Low_complexity 5 81 0 193 299 13 0 chr9 100155580 100155657 -17706970 + L2 LINE L2 3158 3235 -78 609 225 14 7 chr9 100155749 100155887 -17706740 + MIR SINE MIR 10 148 -114 641 269 58 31 chr9 100155913 100156136 -17706491 + MIR SINE MIR 8 236 -26 263 292 54 46 chr9 100156777 100156907 -17705720 - MIR3 SINE MIR -68 140 10 213 209 0 0 chr9 100156907 100156950 -17705677 + (TTCA)n Simple_repeat Simple_repeat 1 43 0 290 171 0 71 chr9 100157420 100157490 -17705137 - L2 LINE L2 -2 3311 3247 375 241 110 27 chr9 100157617 100157786 -17704841 + MIR SINE MIR 37 218 -44 314 235 70 52 chr9 100157994 100158109 -17704518 + MER96 DNA MER1_type? 4 120 -55 576 282 58 91 chr9 100158430 100158912 -17703715 + L2 LINE L2 2806 3271 -1 339 146 0 0 chr9 100159282 100159330 -17703297 + Charlie5 DNA MER1_type 19 66 -2546 632 184 43 7 chr9 100159339 100159480 -17703147 + Charlie5 DNA MER1_type 2476 2621 0 1795 242 129 19 chr9 100159697 100160231 -17702396 - MLT1E LTR MaLR 0 593 1 1888 173 16 27 chr9 100160350 100160719 -17701908 - MLT1A1 LTR MaLR 0 365 1 225 94 0 0 chr9 100161293 100161325 -17701302 + (TTTA)n Simple_repeat Simple_repeat 4 35 0 1460 163 42 62 chr9 100161485 100161558 -17701069 - L1MA10 LINE L1 -7 6327 6254 201 39 0 0 chr9 100161558 100161584 -17701043 + (TA)n Simple_repeat Simple_repeat 1 26 0 1460 163 42 62 chr9 100161584 100161847 -17700780 - L1MA10 LINE L1 -80 6254 5998 678 254 94 5 chr9 100162079 100162303 -17700324 - MIR SINE MIR -16 246 3 211 313 0 0 chr9 100162333 100162381 -17700246 - MIR SINE MIR -55 153 106 229 261 23 34 chr9 100163036 100163124 -17699503 + CT-rich Low_complexity Low_complexity 3 89 0 403 274 153 0 chr9 100163510 100163700 -17698927 + MIR SINE MIR 38 256 -6 215 204 0 0 chr9 100163826 100163870 -17698757 + MIR SINE MIR 107 150 -112 695 219 7 7 chr9 100165541 100165687 -17696940 + MER104 DNA Tc2 34 179 -1 837 267 73 79 chr9 100165811 100166317 -17696310 - MLT1J LTR MaLR -8 503 1 187 250 18 0 chr9 100166379 100166435 -17696192 + MIR SINE MIR 108 164 -98 211 292 60 111 chr9 100166938 100167154 -17695473 + MIR SINE MIR 36 240 -22 471 287 31 31 chr9 100167174 100167361 -17695266 - MIR3 SINE MIR -7 201 14 1753 154 27 16 chr9 100168249 100168584 -17694043 + MSTA LTR MaLR 77 428 0 2723 143 16 35 chr9 100168684 100169118 -17693509 - MSTB LTR MaLR 0 426 1 398 273 10 10 chr9 100169370 100169469 -17693158 + L2 LINE L2 3173 3271 -1 228 331 15 52 chr9 100169701 100169837 -17692790 - MIR3 SINE MIR -63 145 15 27 62 0 0 chr9 100170296 100170344 -17692283 + AT_rich Low_complexity Low_complexity 1 48 0 5377 62 0 2 chr9 100170344 100170986 -17691641 - L1PA5 LINE L1 -3 6151 5511 1563 231 61 72 chr9 100170991 100171184 -17691443 + L1M4 LINE L1 3942 4136 -2010 1063 138 21 0 chr9 100171184 100171373 -17691254 + L1MA7 LINE L1 6093 6285 -6 1563 231 61 72 chr9 100171373 100171816 -17690811 + L1M4 LINE L1 4136 4571 -1575 790 240 113 27 chr9 100171817 100172109 -17690518 + L1MD2 LINE L1 6040 6356 -3 327 285 48 42 chr9 100172159 100172324 -17690303 + MLT1L LTR MaLR 397 562 -53 282 245 184 20 chr9 100172430 100172528 -17690099 + MIR SINE MIR 2 115 -147 304 268 13 116 chr9 100172605 100172829 -17689798 - L2 LINE L2 -68 3245 3045 473 72 116 0 chr9 100172857 100172926 -17689701 - L1PA13 LINE L1 -12 6151 6075 1697 159 19 7 chr9 100172927 100173246 -17689381 + L1M LINE L1 5061 5383 -772 360 227 0 57 chr9 100173254 100173342 -17689285 - L2 LINE L2 -286 3027 2945 199 324 9 38 chr9 100173684 100173789 -17688838 + MIR SINE MIR 111 212 -50 382 372 10 15 chr9 100174676 100174875 -17687752 + MIR SINE MIR 8 205 -57 499 308 44 60 chr9 100175034 100175352 -17687275 - L2 LINE L2 0 3313 3001 291 308 100 17 chr9 100175973 100176093 -17686534 - L2 LINE L2 -20 3293 3164 229 367 82 25 chr9 100176251 100176409 -17686218 - L2 LINE L2 -6 3266 3100 249 288 64 32 chr9 100176516 100176641 -17685986 - L2 LINE L2 -10 3262 3134 218 355 122 0 chr9 100176668 100176775 -17685852 - L2 LINE L2 0 3272 3153 195 337 0 35 chr9 100177062 100177148 -17685479 - MIR SINE MIR -6 256 174 187 266 94 62 chr9 100177428 100177556 -17685071 - L2 LINE L2 -422 2892 2761 233 223 23 16 chr9 100177631 100177706 -17684921 - MLT1L LTR MaLR 0 597 511 4050 183 34 27 chr9 100177708 100178595 -17684032 - L1MB8 LINE L1 -1 6177 5285 598 239 28 21 chr9 100179226 100179368 -17683259 - MIR SINE MIR -105 157 15 227 210 0 97 chr9 100179403 100179465 -17683162 + L2 LINE L2 3250 3305 -8 361 258 11 107 chr9 100180227 100180405 -17682222 - MIR SINE MIR -46 216 56 436 276 133 7 chr9 100180457 100180617 -17682010 + MIR SINE MIR 33 210 -52 314 296 26 43 chr9 100180922 100181054 -17681573 - MIR SINE MIR -76 132 1 360 137 0 0 chr9 100181092 100181143 -17681484 - L1M2 LINE L1 -612 5679 5629 * 1242 146 29 5 chr9 100181129 100181334 -17681293 + L1MA7 LINE L1 5349 5558 -733 3760 143 19 27 chr9 100181338 100181968 -17680659 + L1MA7 LINE L1 5662 6286 -5 4642 45 2 0 chr9 100181984 100182513 -17680114 + L1PA7 LINE L1 5625 6154 0 4339 297 124 29 chr9 100182611 100182758 -17679869 - L2 LINE L2 0 3313 3181 228 111 0 0 chr9 100182758 100182794 -17679833 + (CAAA)n Simple_repeat Simple_repeat 3 38 0 4339 297 124 29 chr9 100182794 100185021 -17677606 - L2 LINE L2 -132 3181 692 3023 158 45 19 chr9 100185048 100185629 -17676998 + L1MB7 LINE L1 5369 5964 -220 3622 134 31 10 chr9 100186145 100186661 -17675966 + MER1A DNA MER1_type 1 527 0 219 346 140 9 chr9 100186760 100186867 -17675760 + L2 LINE L2 3136 3256 -16 527 355 40 9 chr9 100186873 100187101 -17675526 + MIR SINE MIR 28 262 0 258 250 200 12 chr9 100187234 100187314 -17675313 - MIR SINE MIR -76 186 92 201 100 25 25 chr9 100187558 100187598 -17675029 + (GAAA)n Simple_repeat Simple_repeat 1 40 0 519 240 24 8 chr9 100188037 100188162 -17674465 + L2 LINE L2 3186 3312 -1 307 326 37 57 chr9 100188946 100189111 -17673516 - MIR SINE MIR -3 259 99 2256 131 0 0 chr9 100189111 100189417 -17673210 + AluSx SINE Alu 1 306 -6 307 326 37 57 chr9 100189417 100189496 -17673131 - MIR SINE MIR -163 99 20 912 140 11 6 chr9 100189824 100190002 -17672625 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 2158 119 0 3 chr9 100190489 100190791 -17671836 + AluSq SINE Alu 11 311 -2 520 289 0 0 chr9 100191373 100191501 -17671126 + MLT1H LTR MaLR 106 233 -316 654 234 31 7 chr9 100191599 100191757 -17670870 + MLT1H LTR MaLR 406 547 -2 865 347 23 40 chr9 100191964 100192439 -17670188 + L2 LINE L2 2847 3313 0 235 250 0 0 chr9 100193453 100193501 -17669126 - L3 LINE CR1 -4 1573 1526 449 314 16 46 chr9 100195113 100195269 -17667358 + MIR3 SINE MIR 2 152 -56 2817 145 32 2 chr9 100195269 100195704 -17666923 + MER83 LTR ERV1 1 448 0 449 314 16 46 chr9 100195704 100195741 -17666886 + MIR3 SINE MIR 152 189 -19 483 275 61 14 chr9 100195798 100195975 -17666652 + MIR SINE MIR 3 191 -61 441 243 19 10 chr9 100195997 100196100 -17666527 + L2 LINE L2 3168 3271 -1 206 329 0 12 chr9 100196166 100196251 -17666376 + CT-rich Low_complexity Low_complexity 4 87 0 255 318 71 24 chr9 100196690 100196816 -17665811 - MIR3 SINE MIR -9 199 68 341 102 0 0 chr9 100197262 100197311 -17665316 - L1P LINE L1 -4039 2107 2059 8675 89 9 2 chr9 100197316 100199240 -17663387 + L1PA7 LINE L1 4235 6167 0 356 212 38 98 chr9 100199351 100199483 -17663144 + L2 LINE L2 3190 3313 0 342 365 39 11 chr9 100199513 100199694 -17662933 + MIR SINE MIR 49 234 -28 3123 139 17 2 chr9 100199959 100200440 -17662187 + L1PB4 LINE L1 5662 6149 -7 370 266 60 95 chr9 100201114 100201430 -17661197 - L2 LINE L2 -122 3191 2887 373 326 64 7 chr9 100202320 100202461 -17660166 + MIR3 SINE MIR 31 179 -29 808 138 0 19 chr9 100202461 100202621 -17660006 + (TTCC)n Simple_repeat Simple_repeat 4 160 0 413 270 57 38 chr9 100203071 100203230 -17659397 + MER117 DNA MER1_type 30 191 -6 362 277 28 43 chr9 100203239 100203380 -17659247 - MIR SINE MIR -107 155 17 541 339 24 40 chr9 100203692 100203940 -17658687 + MIR SINE MIR 18 261 -1 183 80 0 0 chr9 100203988 100204013 -17658614 + (CAT)n Simple_repeat Simple_repeat 1 25 0 214 172 47 16 chr9 100204130 100204194 -17658433 + (TCTA)n Simple_repeat Simple_repeat 1 66 0 319 243 100 36 chr9 100204194 100204372 -17658255 - MIR SINE MIR -62 146 3 396 321 36 7 chr9 100205122 100205262 -17657365 + MIR SINE MIR 5 148 -114 388 220 89 122 chr9 100205292 100205506 -17657121 - MIR SINE MIR 0 262 56 340 212 121 28 chr9 100205506 100205688 -17656939 - LTR33 LTR ERVL -29 492 254 311 247 37 0 chr9 100205771 100205852 -17656775 - LTR33 LTR ERVL -433 88 5 432 82 0 0 chr9 100206675 100206736 -17655891 + (GGA)n Simple_repeat Simple_repeat 2 62 0 213 161 0 71 chr9 100206850 100206906 -17655721 + GA-rich Low_complexity Low_complexity 4 55 0 1227 183 27 2 chr9 100207722 100207997 -17654630 - L1PA16 LINE L1 0 6166 5858 * 1256 169 16 8 chr9 100207995 100208185 -17654442 + L1PA16 LINE L1 5592 5779 -387 2298 121 0 0 chr9 100208185 100208492 -17654135 + AluSq SINE Alu 1 307 -6 432 0 0 0 chr9 100208497 100208545 -17654082 + (TA)n Simple_repeat Simple_repeat 1 48 0 234 0 0 0 chr9 100208544 100208570 -17654057 + (CA)n Simple_repeat Simple_repeat 2 27 0 * 1256 169 16 8 chr9 100208545 100208615 -17654012 + L1PA16 LINE L1 5782 5835 -331 282 311 25 25 chr9 100208698 100208817 -17653810 - MIR SINE MIR -52 210 92 462 198 72 54 chr9 100209423 100209590 -17653037 - MER96B DNA MER1_type? -236 181 12 1877 166 0 32 chr9 100209640 100209954 -17652673 - AluJb SINE Alu -8 304 1 376 300 31 15 chr9 100210068 100210198 -17652429 + MIR SINE MIR 31 162 -100 2069 119 3 14 chr9 100210246 100210541 -17652086 + AluSx SINE Alu 1 292 -20 31 0 0 0 chr9 100210541 100210572 -17652055 + AT_rich Low_complexity Low_complexity 1 31 0 411 284 169 35 chr9 100210677 100210878 -17651749 + MIR SINE MIR 22 249 -13 352 336 46 23 chr9 100210903 100211034 -17651593 - MIR3 SINE MIR -69 139 6 917 294 26 68 chr9 100211772 100212440 -17650187 - L2 LINE L2 -5 3267 2632 585 259 190 55 chr9 100212538 100213012 -17649615 + MLT1H LTR MaLR 12 549 0 360 267 125 25 chr9 100213028 100213148 -17649479 + L2 LINE L2 3182 3313 0 223 381 67 38 chr9 100213298 100213403 -17649224 - L2 LINE L2 -32 3240 3133 509 202 69 87 chr9 100213427 100213600 -17649027 - MIR SINE MIR -15 247 78 234 382 34 10 chr9 100213728 100213932 -17648695 - L2 LINE L2 -250 3022 2814 309 287 35 43 chr9 100214048 100214163 -17648464 + MIR3 SINE MIR 47 160 -48 366 281 11 0 chr9 100214206 100214295 -17648332 + MIR SINE MIR 155 244 -18 734 284 14 24 chr9 100214377 100214588 -17648039 + MIR SINE MIR 44 252 -10 418 336 0 8 chr9 100214604 100214732 -17647895 - MIR SINE MIR -118 144 18 248 270 70 26 chr9 100215075 100215190 -17647437 + MIR3 SINE MIR 15 134 -74 437 219 50 25 chr9 100215203 100215322 -17647305 + MER94 DNA DNA 13 134 0 509 289 25 20 chr9 100216727 100216924 -17645703 + MIR SINE MIR 65 262 0 325 309 11 0 chr9 100216946 100217040 -17645587 + MIR SINE MIR 168 262 0 221 296 63 56 chr9 100217173 100217315 -17645312 - MER5A DNA MER1_type 0 189 47 379 271 156 20 chr9 100217429 100217628 -17644999 - MIR SINE MIR -36 226 1 209 279 45 91 chr9 100217650 100217804 -17644823 - L2 LINE L2 -301 2971 2825 792 233 57 126 chr9 100217812 100218336 -17644291 - MLT1J LTR MaLR 0 511 24 307 212 15 0 chr9 100218391 100218457 -17644170 - MIR SINE MIR -21 241 175 205 321 145 13 chr9 100218598 100218757 -17643870 + MIR3 SINE MIR 16 195 -13 722 322 81 61 chr9 100218943 100219714 -17642913 + L2 LINE L2 2422 3213 -59 328 224 105 0 chr9 100219881 100219957 -17642670 - MIR SINE MIR -70 192 109 2114 134 0 3 chr9 100220011 100220318 -17642309 - AluSx SINE Alu -6 306 1 338 145 0 29 chr9 100220704 100220773 -17641854 + (CATATA)n Simple_repeat Simple_repeat 2 68 0 680 295 40 18 chr9 100221558 100221785 -17640842 - MIR SINE MIR -30 232 1 684 276 10 25 chr9 100222293 100222496 -17640131 + MIR SINE MIR 49 248 -14 332 336 58 7 chr9 100222724 100222861 -17639766 - MIR SINE MIR -63 145 28 251 257 27 49 chr9 100223631 100223814 -17638813 + (TG)n Simple_repeat Simple_repeat 1 179 0 558 282 82 51 chr9 100224610 100224904 -17637723 - L2 LINE L2 -5 3308 3006 1516 189 15 4 chr9 100224924 100225189 -17637438 + AluJb SINE Alu 1 268 -44 204 329 43 12 chr9 100225198 100225362 -17637265 - L2 LINE L2 -416 2898 2730 574 244 8 8 chr9 100225491 100225614 -17637013 - MER5A DNA MER1_type -2 187 65 325 98 59 0 chr9 100225715 100225766 -17636861 - MER5A DNA MER1_type -135 54 1 484 323 97 15 chr9 100225879 100226074 -17636553 - MIR SINE MIR -25 237 27 1445 118 0 5 chr9 100226131 100226334 -17636293 - THE1B LTR MaLR 0 364 163 196 206 14 96 chr9 100226454 100226527 -17636100 - MIR3 SINE MIR -133 75 9 360 0 0 0 chr9 100226600 100226640 -17635987 + (CA)n Simple_repeat Simple_repeat 2 41 0 731 229 18 24 chr9 100227217 100227383 -17635244 - MIR SINE MIR -70 192 28 932 159 29 73 chr9 100227716 100227961 -17634666 - L1ME LINE L1 -625 5539 5306 662 253 38 0 chr9 100227941 100228127 -17634500 - L1PB4 LINE L1 -3 6153 5961 * 362 273 123 0 chr9 100228134 100228288 -17634339 - L1ME LINE L1 -841 5305 5133 829 257 63 13 chr9 100228363 100228663 -17633964 - L1ME LINE L1 -1010 5136 4822 305 228 30 79 chr9 100228740 100228841 -17633786 + MIR3 SINE MIR 68 163 -45 2013 189 87 42 chr9 100229054 100229411 -17633216 - MLT1D LTR MaLR -1 504 118 2666 113 6 3 chr9 100229411 100229774 -17632853 - THE1B LTR MaLR 0 364 1 2013 189 87 42 chr9 100229774 100229898 -17632729 - MLT1D LTR MaLR -387 118 1 244 322 23 0 chr9 100230092 100230179 -17632448 + MIR3 SINE MIR 73 161 -47 226 171 24 0 chr9 100230265 100230306 -17632321 - Charlie8 DNA MER1_type -2142 275 234 190 159 8 143 chr9 100231350 100231446 -17631181 - MIR SINE MIR -79 183 106 2593 117 22 6 chr9 100231943 100232301 -17630326 - THE1B LTR MaLR 0 364 1 398 287 31 23 chr9 100232423 100232552 -17630075 + L2 LINE L2 3143 3272 0 223 213 66 0 chr9 100232546 100232607 -17630020 - MIR SINE MIR -61 201 137 * 486 226 131 7 chr9 100232625 100232762 -17629865 - MIR SINE MIR 0 262 109 456 113 14 14 chr9 100232951 100233022 -17629605 + MLT1C LTR MaLR 397 467 0 298 259 175 0 chr9 100233022 100233165 -17629462 + MIR SINE MIR 81 248 -14 218 317 0 17 chr9 100233596 100233656 -17628971 - L3 LINE CR1 -6 1571 1513 248 316 171 18 chr9 100233791 100234019 -17628608 + L2 LINE L2 2808 3070 -202 184 255 59 0 chr9 100234282 100234333 -17628294 - L2 LINE L2 -12 3260 3207 205 296 0 0 chr9 100234381 100234435 -17628192 - MIR SINE MIR -107 155 102 334 312 105 68 chr9 100234449 100234744 -17627883 - L2 LINE L2 0 3272 2967 284 331 212 0 chr9 100235013 100235197 -17627430 - MLT1J2 LTR MaLR -2 448 226 12051 207 21 10 chr9 100235244 100237036 -17625591 + L1PA16 LINE L1 2567 4404 -1762 198 0 0 0 chr9 100237036 100237058 -17625569 + (CA)n Simple_repeat Simple_repeat 1 22 0 12051 207 21 10 chr9 100237058 100238142 -17624485 + L1PA16 LINE L1 4404 5475 -691 4510 126 12 33 chr9 100238182 100238904 -17623723 + L1PA16 LINE L1 5460 6166 0 281 135 19 0 chr9 100238963 100239015 -17623612 + GA-rich Low_complexity Low_complexity 1 53 0 334 275 76 9 chr9 100239021 100239145 -17623482 - MLT1J2 LTR MaLR -234 212 93 201 284 8 67 chr9 100239438 100239572 -17623055 - MIR3 SINE MIR -49 159 34 233 296 125 59 chr9 100240460 100240612 -17622015 - L2 LINE L2 -76 3196 3035 4426 144 18 83 chr9 100240625 100242157 -17620470 - pTR5 LTR ERV1 0 2606 1524 1609 188 90 27 chr9 100242254 100242621 -17620006 - MLT1B LTR MaLR 0 390 1 364 352 62 12 chr9 100242677 100242839 -17619788 + MIR SINE MIR 19 188 -74 930 215 67 14 chr9 100242948 100243171 -17619456 - MIR SINE MIR 0 262 28 216 190 17 86 chr9 100243860 100243918 -17618709 + L2 LINE L2 3256 3309 -4 835 301 73 66 chr9 100243931 100244475 -17618152 - L2 LINE L2 -501 2813 2266 198 167 0 0 chr9 100245142 100245178 -17617449 + (TG)n Simple_repeat Simple_repeat 1 36 0 343 302 0 21 chr9 100245265 100245361 -17617266 + MIR SINE MIR 23 116 -92 262 272 184 0 chr9 100246349 100246452 -17616175 - L2 LINE L2 -219 3053 2932 2639 48 0 6 chr9 100246905 100247218 -17615409 - AluY SINE Alu 0 311 1 181 341 44 139 chr9 100247801 100248074 -17614553 - L2 LINE L2 -19 3253 3007 243 333 29 19 chr9 100248782 100248887 -17613740 - MIR SINE MIR -123 139 34 562 281 121 5 chr9 100249045 100249244 -17613383 - MER58A DNA MER1_type -1 223 2 321 301 20 5 chr9 100249244 100249380 -17613247 - MIR SINE MIR -66 142 4 356 303 168 0 chr9 100249968 100250087 -17612540 - L2 LINE L2 0 3272 3134 506 297 51 17 chr9 100250420 100250595 -17612032 - MIR3 SINE MIR -15 193 13 221 0 35 0 chr9 100251695 100251724 -17610903 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 198 270 96 17 chr9 100251757 100251872 -17610755 + L2 LINE L2 2925 3048 -224 2125 113 7 7 chr9 100252097 100252390 -17610237 - AluSc SINE Alu -16 293 1 1970 150 0 7 chr9 100252682 100252969 -17609658 + AluSx SINE Alu 1 285 -27 240 35 0 0 chr9 100252969 100252998 -17609629 + (CA)n Simple_repeat Simple_repeat 2 30 0 208 188 47 16 chr9 100252998 100253062 -17609565 + (TAAA)n Simple_repeat Simple_repeat 3 68 0 705 264 5 31 chr9 100253741 100253934 -17608693 + MER5A DNA MER1_type 1 188 -1 1767 198 36 0 chr9 100254831 100255160 -17607467 - MER58B DNA MER1_type 0 341 1 357 268 62 9 chr9 100255480 100255592 -17607035 - MIR SINE MIR -79 183 66 531 0 0 0 chr9 100256096 100256155 -17606472 + (TA)n Simple_repeat Simple_repeat 2 60 0 219 280 20 0 chr9 100256420 100256470 -17606157 - L2 LINE L2 -24 3248 3198 754 314 32 38 chr9 100256663 100257035 -17605592 + MLT1I LTR MaLR 33 402 -7 211 212 121 30 chr9 100257102 100257168 -17605459 - L2 LINE L2 -219 3053 2982 541 164 21 79 chr9 100257202 100257342 -17605285 + MIR SINE MIR 83 214 -48 451 227 82 62 chr9 100257345 100257539 -17605088 - MLT1K LTR MaLR 0 588 391 217 180 80 0 chr9 100258029 100258079 -17604548 + (CATG)n Simple_repeat Simple_repeat 3 56 0 296 272 12 12 chr9 100258079 100258252 -17604375 + (TG)n Simple_repeat Simple_repeat 2 174 0 492 334 90 59 chr9 100259039 100259715 -17602912 + L2 LINE L2 2376 3071 -201 222 222 0 0 chr9 100260133 100260178 -17602449 + (TTCA)n Simple_repeat Simple_repeat 2 46 0 231 204 0 45 chr9 100260194 100260238 -17602389 - L2 LINE L2 -22 3250 3209 2268 125 0 0 chr9 100260292 100260597 -17602030 + AluSq SINE Alu 1 305 -8 201 256 0 0 chr9 100261039 100261082 -17601545 - MIR3 SINE MIR -17 191 149 382 271 49 33 chr9 100261332 100261454 -17601173 - MIR3 SINE MIR -48 160 37 189 255 78 0 chr9 100261789 100261840 -17600787 + MIR SINE MIR 76 130 -78 519 272 24 35 chr9 100262677 100262846 -17599781 - MIR3 SINE MIR -8 200 34 309 398 81 34 chr9 100263342 100263578 -17599049 - L2 LINE L2 0 3272 3026 250 319 0 0 chr9 100263672 100263744 -17598883 - MIR SINE MIR -117 145 74 25 0 0 0 chr9 100264153 100264178 -17598449 + AT_rich Low_complexity Low_complexity 1 25 0 1659 175 15 7 chr9 100265299 100265568 -17597059 + AluJb SINE Alu 1 271 -41 243 265 29 44 chr9 100265771 100265839 -17596788 + MIR3 SINE MIR 119 185 -23 2234 109 0 6 chr9 100266675 100266987 -17595640 + AluSg SINE Alu 1 310 0 23 0 0 0 chr9 100267214 100267237 -17595390 + AT_rich Low_complexity Low_complexity 1 23 0 755 265 47 96 chr9 100267471 100267732 -17594895 + L1ME LINE L1 815 1087 -5174 239 200 0 17 chr9 100267732 100267792 -17594835 + (TA)n Simple_repeat Simple_repeat 2 60 0 755 265 47 96 chr9 100267792 100268265 -17594362 + L1ME LINE L1 1087 1605 -4656 443 275 62 57 chr9 100269097 100269507 -17593120 - MLT1J2 LTR MaLR 0 409 3 184 328 0 0 chr9 100270007 100270065 -17592562 + MIR SINE MIR 47 104 -104 2088 173 102 2 chr9 100270331 100270753 -17591874 - MLT2B1 LTR ERVL -56 464 1 204 224 45 30 chr9 100270989 100271056 -17591571 + MIR3 SINE MIR 141 208 0 205 289 19 0 chr9 100271272 100271324 -17591303 + L2 LINE L2 2683 2735 -579 2335 106 3 0 chr9 100272063 100272374 -17590253 - AluSx SINE Alu 0 312 1 453 355 0 11 chr9 100272429 100272618 -17590009 - MIR SINE MIR -52 210 24 348 273 56 31 chr9 100272635 100272796 -17589831 + MIR SINE MIR 48 212 -50 183 211 211 0 chr9 100273199 100273251 -17589376 - L2 LINE L2 0 3313 3251 * 1008 263 18 0 chr9 100273220 100273448 -17589179 - MIR SINE MIR -26 236 5 209 220 120 50 chr9 100273954 100274054 -17588573 - MIR SINE MIR -62 146 40 190 376 12 24 chr9 100274248 100274333 -17588294 - MIR SINE MIR -156 106 23 189 374 22 0 chr9 100275206 100275297 -17587330 - MIR3 SINE MIR -5 203 111 303 227 13 0 chr9 100275874 100275949 -17586678 - MER103 DNA DNA -83 83 8 537 279 29 12 chr9 100276212 100276384 -17586243 + MIR SINE MIR 86 260 -2 985 201 14 9 chr9 100276645 100276864 -17585763 + L1MB3 LINE L1 5964 6183 0 305 279 8 39 chr9 100277684 100277813 -17584814 + L3b LINE CR1 1113 1237 -346 499 318 98 0 chr9 100278404 100278577 -17584050 + MIR SINE MIR 53 242 -20 417 266 35 35 chr9 100278997 100279170 -17583457 + MER5B DNA MER1_type 1 173 -5 1747 167 39 0 chr9 100279340 100279670 -17582957 + MER47A DNA MER2_type 1 343 -23 359 336 50 0 chr9 100280319 100280459 -17582168 + MIR SINE MIR 84 230 -32 2028 191 3 0 chr9 100280591 100280953 -17581674 + MLT1A1 LTR MaLR 3 365 0 299 340 31 25 chr9 100281918 100282127 -17580500 - MIR SINE MIR -44 218 4 23 0 0 0 chr9 100282267 100282290 -17580337 + AT_rich Low_complexity Low_complexity 1 23 0 476 329 12 18 chr9 100282310 100282474 -17580153 - MIR SINE MIR -44 218 56 1463 186 49 11 chr9 100282585 100282849 -17579778 - AluJo SINE Alu -38 274 1 366 331 41 0 chr9 100283061 100283182 -17579445 - L2 LINE L2 0 3272 3147 217 222 0 19 chr9 100283204 100283258 -17579369 + L2 LINE L2 3258 3310 -3 * 344 303 8 42 chr9 100283250 100283369 -17579258 - L2 LINE L2 -12 3301 3187 2273 104 3 13 chr9 100384375 100384691 -17477936 + AluSq SINE Alu 1 313 0 1525 169 7 30 chr9 100384750 100385045 -17477582 + AluJo SINE Alu 23 310 -2 1426 210 73 9 chr9 100386111 100386440 -17476187 - L1ME3A LINE L1 -14 6156 5807 428 274 70 91 chr9 100387572 100387805 -17474822 - L2 LINE L2 0 3313 3089 2147 102 18 0 chr9 100387805 100388088 -17474539 - AluSx SINE Alu -24 288 1 428 274 70 91 chr9 100388088 100388227 -17474400 - L2 LINE L2 -224 3089 2949 572 272 146 11 chr9 100388263 100388531 -17474096 - L2 LINE L2 -527 2787 2484 241 283 88 9 chr9 100388915 100389028 -17473599 - MIR SINE MIR -57 151 30 2209 97 31 3 chr9 100389153 100389443 -17473184 - AluSx SINE Alu -14 298 1 317 286 75 81 chr9 100390893 100391054 -17471573 - MIR SINE MIR -83 179 20 498 279 74 26 chr9 100391788 100391978 -17470649 + L1ME4a LINE L1 5528 5726 -395 277 176 0 0 chr9 100391986 100392037 -17470590 - MIR SINE MIR -8 254 204 407 269 19 12 chr9 100392061 100392221 -17470406 + L1ME4a LINE L1 5727 5887 -234 312 245 32 0 chr9 100392257 100392351 -17470276 + L1ME4a LINE L1 5967 6063 -58 358 268 142 0 chr9 100392973 100393100 -17469527 - MIR3 SINE MIR -49 159 15 337 290 0 0 chr9 100393697 100393790 -17468837 + MIR SINE MIR 59 151 -111 484 206 94 148 chr9 100393812 100394089 -17468538 - MIR SINE MIR 0 262 1 498 233 31 0 chr9 100394354 100394483 -17468144 - MIR SINE MIR -81 181 49 286 274 84 88 chr9 100397351 100397841 -17464786 - L2 LINE L2 -359 2955 2467 2065 121 20 16 chr9 100397841 100398147 -17464480 - AluSx SINE Alu -5 307 1 286 274 84 88 chr9 100398147 100398357 -17464270 - L2 LINE L2 -847 2467 2258 557 241 134 22 chr9 100399379 100399603 -17463024 + Charlie8 DNA MER1_type 38 286 -2131 215 283 0 0 chr9 100400148 100400201 -17462426 - MIR SINE MIR -61 147 95 247 217 49 138 chr9 100400320 100400523 -17462104 - L2 LINE L2 -225 3047 2863 850 56 24 32 chr9 100400642 100400767 -17461860 - L1PA5 LINE L1 0 6154 6031 301 80 0 40 chr9 100400868 100400918 -17461709 + Alu SINE Alu 246 293 -8 1793 152 10 26 chr9 100401832 100402135 -17460492 + AluJo SINE Alu 7 304 -8 2077 130 7 3 chr9 100402177 100402485 -17460142 + AluSx SINE Alu 1 309 -3 429 289 87 16 chr9 100402797 100402980 -17459647 + MIR SINE MIR 34 228 -34 218 292 187 23 chr9 100403614 100403785 -17458842 - MIR SINE MIR -15 247 49 334 262 105 17 chr9 100404370 100405159 -17457468 + L1MC4 LINE L1 6958 7888 -154 7743 29 1 0 chr9 100405159 100406158 -17456469 + L1PA4 LINE L1 5154 6155 0 334 262 105 17 chr9 100406158 100406328 -17456299 + L1MC4 LINE L1 7888 8042 0 184 218 103 58 chr9 100406475 100406562 -17456065 - MIR3 SINE MIR -115 93 3 588 283 11 37 chr9 100406860 100407051 -17455576 + L1ME3A LINE L1 5969 6154 -16 835 249 0 0 chr9 100407063 100407228 -17455399 - FRAM SINE Alu -1 165 1 352 292 35 40 chr9 100407306 100407532 -17455095 + L1MC4a LINE L1 5762 5986 -1822 317 278 134 1 chr9 100407743 100407915 -17454712 + MIR SINE MIR 8 197 -62 2302 113 3 0 chr9 100407938 100408248 -17454379 - AluSx SINE Alu -1 311 1 270 51 26 0 chr9 100408405 100408444 -17454183 + L1ME1 LINE L1 5433 5472 -2523 2044 93 32 22 chr9 100408475 100408753 -17453874 - AluSx SINE Alu -31 281 1 255 176 59 0 chr9 100408754 100408805 -17453822 + MIR SINE MIR 95 148 -60 259 136 114 0 chr9 100408806 100408850 -17453777 - Alu SINE Alu -257 51 3 2499 218 63 12 chr9 100408850 100409491 -17453136 + L1ME1 LINE L1 5469 6079 -87 415 246 48 4 chr9 100409486 100409609 -17453018 + L1ME2 LINE L1 6048 6334 0 * 2489 41 7 0 chr9 100409779 100410074 -17452553 - L1PA5 LINE L1 -133 6021 5725 574 265 87 5 chr9 100412023 100412208 -17450419 - MIR SINE MIR -12 250 51 1433 159 83 10 chr9 100412914 100413216 -17449411 - MER33 DNA MER1_type 0 324 1 450 337 55 38 chr9 100413908 100414560 -17448067 - L2 LINE L2 -623 2691 2029 1811 163 3 3 chr9 100414636 100414930 -17447697 + AluJb SINE Alu 5 298 -14 259 333 7 15 chr9 100415021 100415156 -17447471 - L2 LINE L2 -2493 821 688 539 306 28 14 chr9 100415168 100415384 -17447243 - MIR SINE MIR -30 232 14 350 263 70 65 chr9 100415792 100415897 -17446730 - MIR SINE MIR -19 243 135 2066 126 10 0 chr9 100415897 100416191 -17446436 - AluSx SINE Alu -15 297 1 350 263 70 65 chr9 100416191 100416271 -17446356 - MIR SINE MIR -127 135 57 769 244 32 41 chr9 100416288 100416534 -17446093 - MIR SINE MIR 0 262 19 668 218 107 58 chr9 100418192 100418417 -17444210 - L1MD2 LINE L1 -1 6358 6123 263 286 288 49 chr9 100418481 100418534 -17444093 + MIR SINE MIR 20 59 -149 2600 95 8 22 chr9 100418534 100418605 -17444022 - THE1B LTR MaLR 0 364 294 2565 59 7 0 chr9 100418605 100418908 -17443719 + AluY SINE Alu 1 305 -6 2600 95 8 22 chr9 100418908 100419205 -17443422 - THE1B LTR MaLR -70 294 1 263 286 288 49 chr9 100419205 100419284 -17443343 + MIR SINE MIR 59 172 -36 275 203 68 29 chr9 100419531 100419879 -17442748 + (ATATG)n Simple_repeat Simple_repeat 1 361 0 2175 121 0 3 chr9 100419897 100420186 -17442441 - AluSx SINE Alu -24 288 1 298 130 0 22 chr9 100420236 100420282 -17442345 - Alu SINE Alu -262 46 2 433 227 11 0 chr9 100420299 100420387 -17442240 + L1ME3A LINE L1 6073 6161 -9 23 0 0 0 chr9 100420420 100420443 -17442184 + AT_rich Low_complexity Low_complexity 1 23 0 2490 128 33 65 chr9 100420700 100421160 -17441467 - MER65A LTR ERV1 0 445 1 277 195 130 41 chr9 100421221 100421344 -17441283 - L1ME4a LINE L1 -11 6110 5977 2344 85 7 3 chr9 100421344 100421651 -17440976 - AluSg SINE Alu -2 308 1 300 27 0 0 chr9 100422298 100422335 -17440292 + (TC)n Simple_repeat Simple_repeat 1 37 0 * 414 0 0 0 chr9 100422334 100422380 -17440247 + (CA)n Simple_repeat Simple_repeat 1 46 0 943 241 58 38 chr9 100422400 100422634 -17439993 - L1ME4a LINE L1 -218 5903 5658 783 200 0 0 chr9 100422634 100422764 -17439863 - FLAM_A SINE Alu 0 133 4 943 241 58 38 chr9 100422764 100422874 -17439753 - L1ME4a LINE L1 -463 5658 5552 21 0 0 0 chr9 100423265 100423286 -17439341 + AT_rich Low_complexity Low_complexity 1 21 0 439 269 170 17 chr9 100423431 100423703 -17438924 - L1ME4a LINE L1 -215 5906 5597 1661 186 0 10 chr9 100423711 100424002 -17438625 - AluJo SINE Alu -24 288 1 7191 35 3 0 chr9 100424016 100424862 -17437765 - L1PA4 LINE L1 0 6155 5307 310 183 51 14 chr9 100424887 100424967 -17437660 - L1ME4a LINE L1 -528 5593 5516 183 225 0 0 chr9 100425187 100425227 -17437400 - L2 LINE L2 -214 3058 3019 231 61 0 0 chr9 100425461 100425494 -17437133 + (TC)n Simple_repeat Simple_repeat 1 33 0 239 319 129 36 chr9 100426870 100427118 -17435509 - L2 LINE L2 -176 3096 2826 1785 186 0 0 chr9 100428194 100428479 -17434148 - AluJo SINE Alu -27 285 1 2345 89 7 0 chr9 100428508 100428810 -17433817 + AluSx SINE Alu 1 304 -8 184 226 161 16 chr9 100429580 100429642 -17432985 - L2 LINE L2 -1 3271 3201 209 161 0 0 chr9 100430567 100430598 -17432029 + (TG)n Simple_repeat Simple_repeat 2 32 0 337 337 131 5 chr9 100430686 100430885 -17431742 + MIR SINE MIR 36 259 -3 227 335 78 34 chr9 100430968 100431147 -17431480 + MIR SINE MIR 47 233 -29 621 278 71 86 chr9 100431589 100431971 -17430656 - L2 LINE L2 -38 3234 2859 243 0 0 0 chr9 100432575 100432602 -17430025 + (TA)n Simple_repeat Simple_repeat 1 27 0 288 0 0 0 chr9 100432602 100432634 -17429993 + (T)n Simple_repeat Simple_repeat 1 32 0 21 36 0 0 chr9 100432922 100432950 -17429677 + AT_rich Low_complexity Low_complexity 1 28 0 403 295 0 0 chr9 100433111 100433223 -17429404 + MIR SINE MIR 47 158 -104 14900 113 59 5 chr9 100433248 100435488 -17427139 - Tigger1 DNA MER2_type -57 2361 1 191 246 88 0 chr9 100435488 100435545 -17427082 + MIR SINE MIR 156 217 -45 239 320 129 33 chr9 100435612 100436055 -17426572 - L2 LINE L2 -208 3064 2548 379 353 49 10 chr9 100436784 100436988 -17425639 - MIR SINE MIR -23 239 28 599 300 28 36 chr9 100437420 100437673 -17424954 + MIR SINE MIR 6 256 -6 319 323 57 44 chr9 100438015 100438426 -17424201 - HAL1b LINE L1 -847 501 81 1817 173 3 6 chr9 100438426 100438739 -17423888 - AluJo SINE Alu 0 312 1 319 323 57 44 chr9 100438739 100438822 -17423805 - HAL1b LINE L1 -1267 81 1 1775 145 3 17 chr9 100438923 100439213 -17423414 - AluSx SINE Alu -12 300 15 492 310 123 0 chr9 100439594 100439781 -17422846 + L2 LINE L2 2564 2773 -541 1991 116 36 7 chr9 100439811 100440112 -17422515 - AluSx SINE Alu -2 310 1 832 176 0 0 chr9 100440124 100440255 -17422372 - FLAM_C SINE Alu -12 131 1 225 333 0 0 chr9 100440489 100440570 -17422057 - L1MC/D LINE L1 -851 5508 5428 308 296 106 61 chr9 100440735 100440999 -17421628 - LTR16A LTR ERVL -158 292 17 195 268 18 0 chr9 100441020 100441076 -17421551 - MER5A DNA MER1_type -6 183 127 1992 143 0 3 chr9 100441076 100441363 -17421264 + AluJb SINE Alu 1 286 -26 276 158 0 0 chr9 100441363 100441420 -17421207 + (CA)n Simple_repeat Simple_repeat 1 57 0 795 193 0 0 chr9 100441420 100441555 -17421072 - MER5A DNA MER1_type -53 136 2 315 321 31 37 chr9 100441682 100441844 -17420783 - L2 LINE L2 -504 2810 2650 2007 43 0 0 chr9 100441989 100442223 -17420404 - L1P2 LINE L1 -376 5778 5545 238 339 85 23 chr9 100442375 100442505 -17420122 - MIR3 SINE MIR -69 139 2 674 208 36 30 chr9 100443225 100443393 -17419234 - MER5B DNA MER1_type -8 170 2 1584 161 102 4 chr9 100443574 100443848 -17418779 - AluJo SINE Alu -11 301 1 2268 222 32 19 chr9 100444362 100444956 -17417671 - L1M4 LINE L1 -1821 4325 3724 1533 174 41 27 chr9 100445180 100445309 -17417318 + AluJb SINE Alu 1 127 -185 2461 70 0 3 chr9 100445309 100445609 -17417018 + AluSx SINE Alu 1 299 -13 1533 174 41 27 chr9 100445609 100445772 -17416855 + AluJb SINE Alu 127 297 -15 731 245 92 40 chr9 100446328 100446577 -17416050 - MIR SINE MIR 0 262 1 702 168 36 15 chr9 100446939 100447076 -17415551 - L1M4 LINE L1 -369 5815 5676 * 1312 145 46 140 chr9 100447069 100447199 -17415428 - L1M4 LINE L1 -367 5817 5676 280 149 0 21 chr9 100447199 100447246 -17415381 - Alu SINE Alu -12 290 245 1312 145 46 140 chr9 100447246 100447441 -17415186 - L1M4 LINE L1 -508 5676 5481 881 174 6 45 chr9 100447441 100447619 -17415008 - FRAM SINE Alu -5 171 1 6511 141 39 94 chr9 100447651 100449113 -17413514 - L1MC3 LINE L1 -24 7761 6380 610 134 0 31 chr9 100449129 100449226 -17413401 + LTR48 LTR ERV1 1 94 -693 453 280 0 0 chr9 100449328 100449453 -17413174 + L1MA5 LINE L1 6171 6295 -5 927 216 79 8 chr9 100449500 100449741 -17412886 - MIR SINE MIR 0 262 5 1672 181 36 7 chr9 100449835 100450138 -17412489 + AluJo SINE Alu 1 312 0 452 103 0 0 chr9 100450466 100450524 -17412103 + Alu SINE Alu 2 59 -259 3215 207 36 19 chr9 100450524 100450743 -17411884 + L1M3de LINE L1 971 1185 -5197 1663 173 4 7 chr9 100450743 100451059 -17411568 + AluSx SINE Alu 12 326 0 3215 207 36 19 chr9 100451059 100451940 -17410687 + L1M3de LINE L1 1185 1895 -4487 189 184 0 0 chr9 100452631 100452669 -17409958 + L2 LINE L2 2934 2971 -301 348 255 304 0 chr9 100453106 100453267 -17409360 - MIR SINE MIR -34 228 19 2470 64 0 3 chr9 100453402 100453697 -17408930 + AluSc SINE Alu 3 296 -13 846 216 52 18 chr9 100453697 100453891 -17408736 + L1MB3 LINE L1 5165 5366 -800 2400 90 0 0 chr9 100453891 100454190 -17408437 + AluSx SINE Alu 1 299 -13 846 216 52 18 chr9 100454190 100454319 -17408308 + L1MB3 LINE L1 5366 5489 -677 2259 140 60 14 chr9 100454330 100454743 -17407884 + L1MB3 LINE L1 5736 6167 -16 225 230 40 40 chr9 100454755 100454829 -17407798 - L1MB5 LINE L1 -134 6040 5967 2075 114 0 14 chr9 100454829 100455144 -17407483 - AluSq SINE Alu 0 312 2 1412 78 16 11 chr9 100455147 100455338 -17407289 - L1P4 LINE L1 -470 5691 5500 2062 130 0 13 chr9 100455345 100455646 -17406981 - AluSx SINE Alu -15 297 1 304 343 94 78 chr9 100456179 100456658 -17405969 + L2 LINE L2 2731 3222 -50 195 318 15 0 chr9 100456732 100456798 -17405829 - MIR SINE MIR -95 113 47 703 217 38 19 chr9 100457219 100457238 -17405389 - L1MA10 LINE L1 0 6334 6316 2643 207 28 49 chr9 100457238 100457886 -17404741 - L1ME1 LINE L1 -12 6154 5521 549 195 25 0 chr9 100457881 100457999 -17404628 + L1M4 LINE L1 4992 5112 -1034 * 702 136 204 34 chr9 100458005 100458152 -17404475 + AluJb SINE Alu 125 296 -16 2114 127 3 0 chr9 100458203 100458502 -17404125 + AluSx SINE Alu 9 308 -4 2243 107 7 0 chr9 100458631 100458931 -17403696 + AluSg SINE Alu 1 302 -8 1069 153 0 12 chr9 100459457 100459620 -17403007 + FRAM SINE Alu 1 161 -5 287 315 42 35 chr9 100459801 100459944 -17402683 + MIR SINE MIR 48 191 -71 232 288 15 0 chr9 100460179 100460245 -17402382 - MIR SINE MIR -65 143 77 823 122 0 38 chr9 100460325 100460456 -17402171 + FLAM_C SINE Alu 1 126 -17 1671 89 0 5 chr9 100460470 100460683 -17401944 + AluSq SINE Alu 1 212 -101 254 299 68 51 chr9 100461247 100461364 -17401263 - MER5B DNA MER1_type -59 119 1 217 371 73 39 chr9 100461714 100461919 -17400708 + L3 LINE CR1 1262 1473 -104 1908 143 3 35 chr9 100462167 100462481 -17400146 - AluSx SINE Alu -8 304 1 195 42 0 0 chr9 100462492 100462516 -17400111 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 723 203 28 7 chr9 100462516 100462659 -17399968 - Charlie1a DNA MER1_type -1308 147 2 442 213 213 8 chr9 100462697 100462824 -17399803 + MER5A DNA MER1_type 37 189 0 391 305 18 67 chr9 100462832 100462996 -17399631 - MER5B DNA MER1_type 0 178 23 285 239 161 45 chr9 100463254 100463409 -17399218 + MIR SINE MIR 36 208 -54 216 128 26 0 chr9 100463652 100463691 -17398936 - MIR SINE MIR -109 153 114 430 323 63 22 chr9 100463993 100464216 -17398411 - MIR SINE MIR 0 262 31 1521 134 0 0 chr9 100465656 100465872 -17396755 - AluSg/x SINE Alu -11 299 84 1106 203 127 18 chr9 100465872 100466148 -17396479 - L1ME LINE L1 -490 5676 5371 2194 107 3 7 chr9 100466156 100466456 -17396171 - AluSq SINE Alu -14 299 1 1127 238 76 38 chr9 100466458 100466878 -17395749 - L1MC5 LINE L1 -446 7515 7080 228 263 94 72 chr9 100466866 100467227 -17395400 - HAL1b LINE L1 -979 369 1 * 1822 154 7 7 chr9 100467228 100467513 -17395114 - AluJb SINE Alu -25 287 3 2299 104 0 0 chr9 100468326 100468623 -17394004 + AluSx SINE Alu 1 297 -15 352 216 20 0 chr9 100468623 100468725 -17393902 + GA-rich Low_complexity Low_complexity 1 104 0 469 283 43 78 chr9 100468753 100468775 -17393852 + MIR SINE MIR 13 34 -228 2332 97 0 0 chr9 100468775 100469075 -17393552 + AluSx SINE Alu 1 300 -12 469 283 43 78 chr9 100469075 100469310 -17393317 + MIR SINE MIR 34 261 -1 298 316 94 26 chr9 100469877 100469994 -17392633 - L2 LINE L2 -11 3261 3137 1971 129 0 0 chr9 100470836 100471107 -17391520 + AluSc SINE Alu 8 278 -31 180 0 0 0 chr9 100471110 100471130 -17391497 + (TA)n Simple_repeat Simple_repeat 2 21 0 2522 218 129 18 chr9 100471267 100472011 -17390616 - MER99 DNA DNA 0 828 2 248 242 16 16 chr9 100472063 100472125 -17390502 - MIR SINE MIR -115 93 32 221 288 159 29 chr9 100472521 100472630 -17389997 - MIR SINE MIR -65 143 33 338 275 101 58 chr9 100475424 100475613 -17387014 + MIR SINE MIR 35 231 -31 368 238 98 0 chr9 100475689 100475811 -17386816 + MIR SINE MIR 31 164 -98 855 78 0 0 chr9 100477304 100477419 -17385208 + AluSg/x SINE Alu 193 307 -2 5537 168 18 35 chr9 100477424 100478486 -17384141 + L1MA8 LINE L1 4256 5299 -847 1707 147 3 7 chr9 100478486 100478794 -17383833 - AluSx SINE Alu 0 307 1 5537 168 18 35 chr9 100478794 100478898 -17383729 + L1MA8 LINE L1 5299 5403 -743 3686 155 32 33 chr9 100478909 100479659 -17382968 + L1MA8 LINE L1 5543 6291 0 1121 169 0 48 chr9 100479687 100479918 -17382709 + AluJb SINE Alu 1 220 -92 348 47 0 0 chr9 100479918 100479961 -17382666 + AluSq/x SINE Alu 86 128 -174 325 266 46 87 chr9 100480526 100480589 -17382038 + MIR SINE MIR 20 84 -178 668 215 0 15 chr9 100480589 100480724 -17381903 - FLAM_A SINE Alu 0 133 1 325 266 46 87 chr9 100480724 100480833 -17381794 + MIR SINE MIR 84 185 -77 1760 163 3 3 chr9 100480915 100481204 -17381423 + AluSx SINE Alu 13 301 -11 2331 86 0 0 chr9 100481206 100481507 -17381120 + AluSx SINE Alu 1 301 -11 1118 145 0 0 chr9 100481507 100481679 -17380948 + AluJb SINE Alu 134 305 -7 241 364 20 0 chr9 100482656 100482755 -17379872 - L2 LINE L2 -35 3237 3137 252 100 0 0 chr9 100483341 100483381 -17379246 + (GA)n Simple_repeat Simple_repeat 1 40 0 272 340 62 28 chr9 100483872 100484051 -17378576 - MIR3 SINE MIR -1 207 17 275 295 139 23 chr9 100484918 100485047 -17377580 - MER5A DNA MER1_type -45 144 1 331 216 0 14 chr9 100485055 100485129 -17377498 - Charlie5 DNA MER1_type 0 2624 2552 1648 148 55 3 chr9 100485138 100485429 -17377198 + AluSx SINE Alu 1 306 -6 1496 96 14 14 chr9 100485432 100485650 -17376977 + AluSq SINE Alu 91 308 -5 819 203 0 0 chr9 100485650 100485798 -17376829 + AluJo/FRAM SINE Alu 134 281 -31 701 335 108 48 chr9 100485817 100486351 -17376276 + L2 LINE L2 2465 3060 -212 1729 118 64 7 chr9 100486351 100486631 -17375996 - AluSx SINE Alu -16 296 1 701 335 108 48 chr9 100486631 100486797 -17375830 + L2 LINE L2 3060 3215 -57 322 221 39 13 chr9 100488016 100488093 -17374534 + L2 LINE L2 3223 3301 -12 429 361 79 9 chr9 100488224 100488440 -17374187 - L2 LINE L2 -177 3095 2865 182 239 22 0 chr9 100488437 100488483 -17374144 - MER5A DNA MER1_type -4 185 139 * 250 322 23 11 chr9 100488684 100488771 -17373856 - L2 LINE L2 -43 3229 3142 1347 101 0 39 chr9 100489133 100489340 -17373287 + AluSc SINE Alu 106 304 -5 871 279 129 34 chr9 100489399 100489940 -17372687 + L2 LINE L2 2719 3312 -1 400 303 69 17 chr9 100489967 100490142 -17372485 + MIR SINE MIR 70 253 -9 2278 80 3 6 chr9 100490143 100490454 -17372173 + AluY SINE Alu 1 310 -1 183 129 0 0 chr9 100490495 100490526 -17372101 + (A)n Simple_repeat Simple_repeat 1 31 0 648 250 100 23 chr9 100491038 100491258 -17371369 + MIR SINE MIR 2 238 -24 2228 89 0 3 chr9 100491561 100491853 -17370774 - AluSx SINE Alu -21 291 1 1742 150 7 17 chr9 100492242 100492536 -17370091 - AluJb SINE Alu -21 291 1 306 330 9 43 chr9 100492854 100492969 -17369658 + MIR SINE MIR 31 141 -121 308 389 21 31 chr9 100493031 100493224 -17369403 - L1MC/D LINE L1 -2075 5733 5543 246 312 192 0 chr9 100493736 100493861 -17368766 - MIR SINE MIR -32 230 82 458 311 94 25 chr9 100493943 100494331 -17368296 - L2 LINE L2 -135 3178 2763 359 337 185 5 chr9 100494435 100494640 -17367987 - MIR SINE MIR -7 255 14 531 200 55 73 chr9 100495066 100495116 -17367511 + L1MC/D LINE L1 5618 5667 -2141 1958 98 0 74 chr9 100495116 100495442 -17367185 + AluSg SINE Alu 1 302 -8 531 200 55 73 chr9 100495442 100495556 -17367071 + L1MC/D LINE L1 5667 5779 -2029 384 276 10 0 chr9 100496099 100496197 -17366430 + MIR3 SINE MIR 93 191 -17 741 311 60 46 chr9 100496215 100496913 -17365714 + L2 LINE L2 2563 3271 -1 704 182 135 12 chr9 100497524 100497694 -17364933 - MIR SINE MIR -44 218 28 309 235 62 12 chr9 100497736 100497817 -17364810 + MIR3 SINE MIR 100 184 -24 274 301 53 35 chr9 100497907 100498020 -17364607 + MIR SINE MIR 148 262 0 417 333 102 18 chr9 100498704 100498929 -17363698 + MIR SINE MIR 13 256 -6 961 158 53 47 chr9 100499690 100499880 -17362747 - MER58A DNA MER1_type 0 224 34 327 369 31 0 chr9 100499932 100500062 -17362565 - L2 LINE L2 -2 3270 3137 217 222 0 0 chr9 100500099 100500144 -17362483 + L2 LINE L2 3228 3272 0 * 1341 251 110 21 chr9 100500143 100500874 -17361753 - L2 LINE L2 -1 3312 2511 198 103 0 0 chr9 100500876 100500905 -17361722 + (AAATG)n Simple_repeat Simple_repeat 2 30 0 228 285 83 49 chr9 100501135 100501279 -17361348 + L2 LINE L2 2906 3054 -218 2209 81 3 0 chr9 100501488 100501772 -17360855 + AluSx SINE Alu 1 285 -27 1751 148 16 3 chr9 100501814 100502118 -17360509 + AluJb SINE Alu 5 312 0 261 255 180 5 chr9 100503107 100503192 -17359435 + MIR SINE MIR 8 108 -100 187 250 100 38 chr9 100503185 100503265 -17359362 - L2 LINE L2 -2 3270 3186 * 261 319 210 0 chr9 100503258 100503396 -17359231 + MIR SINE MIR 96 262 0 287 267 93 0 chr9 100503640 100503726 -17358901 + MIR SINE MIR 107 200 -62 298 345 9 0 chr9 100503849 100503962 -17358665 - MIR SINE MIR -65 143 30 2114 123 0 10 chr9 100504197 100504506 -17358121 + AluSx SINE Alu 1 306 -6 280 281 180 50 chr9 100504778 100504917 -17357710 - MIR3 SINE MIR -34 174 18 381 242 59 46 chr9 100505345 100505482 -17357145 - MIR SINE MIR -63 145 1 21 0 0 0 chr9 100505752 100505773 -17356854 + AT_rich Low_complexity Low_complexity 1 21 0 2057 113 13 3 chr9 100505981 100506283 -17356344 - AluSx SINE Alu -7 305 1 387 189 229 8 chr9 100506925 100507047 -17355580 + MER112 DNA MER1_type 105 253 -7 448 296 30 6 chr9 100507061 100507230 -17355397 - L1ME LINE L1 -348 5773 5601 723 133 51 97 chr9 100507231 100507351 -17355276 + L1MB3 LINE L1 5320 5429 -755 2106 104 3 0 chr9 100507351 100507649 -17354978 + AluSx SINE Alu 1 299 -13 723 133 51 97 chr9 100507649 100507723 -17354904 + L1MB3 LINE L1 5429 5505 -679 684 188 15 15 chr9 100507724 100507857 -17354770 + FLAM_C SINE Alu 1 133 0 1859 153 9 38 chr9 100507858 100508010 -17354617 + L1MB3 LINE L1 5808 5963 -220 1916 141 3 0 chr9 100508010 100508309 -17354318 + AluSx SINE Alu 1 300 -12 1859 153 9 38 chr9 100508309 100508502 -17354125 + L1MB3 LINE L1 5963 6143 -40 659 270 71 19 chr9 100508564 100508775 -17353852 - MIR SINE MIR -13 249 28 2129 97 3 0 chr9 100508919 100509218 -17353409 + AluSc SINE Alu 2 301 -8 482 244 16 24 chr9 100509420 100509495 -17353132 - MER94 DNA DNA -7 127 52 1852 162 0 0 chr9 100509495 100509797 -17352830 - AluJb SINE Alu -10 302 1 482 244 16 24 chr9 100509797 100509848 -17352779 - MER94 DNA DNA -82 52 2 723 261 79 46 chr9 100510166 100510407 -17352220 - MIR SINE MIR -12 250 2 1730 100 108 0 chr9 100511765 100512034 -17350593 - AluSc SINE Alu -11 298 1 968 96 0 22 chr9 100512264 100512400 -17350227 - FLAM_C SINE Alu 0 133 1 189 0 0 0 chr9 100512543 100512564 -17350063 + (TG)n Simple_repeat Simple_repeat 2 22 0 572 243 15 29 chr9 100512580 100512716 -17349911 + L2 LINE L2 3139 3272 0 270 56 0 0 chr9 100512840 100512876 -17349751 + (TC)n Simple_repeat Simple_repeat 1 36 0 453 239 47 87 chr9 100513083 100513164 -17349463 + MIR3 SINE MIR 14 97 -111 2212 98 3 0 chr9 100513164 100513461 -17349166 - AluSp SINE Alu -15 298 1 453 239 47 87 chr9 100513461 100513552 -17349075 + MIR3 SINE MIR 97 186 -22 2262 88 20 0 chr9 100513567 100513864 -17348763 - AluSx SINE Alu -9 303 1 659 295 52 14 chr9 100514004 100514214 -17348413 - MIR SINE MIR -11 251 34 312 281 91 37 chr9 100514400 100514537 -17348090 + MIR SINE MIR 30 174 -59 1736 171 0 13 chr9 100514597 100514912 -17347715 - AluJo SINE Alu -1 311 1 311 311 28 9 chr9 100515403 100515509 -17347118 - MIR SINE MIR -72 190 83 1186 177 152 0 chr9 100515535 100515818 -17346809 - L1MC4a LINE L1 0 7808 7483 2110 85 44 3 chr9 100515820 100516114 -17346513 - AluSc SINE Alu -3 306 1 190 361 0 0 chr9 100516334 100516395 -17346232 + L2 LINE L2 3207 3267 -5 312 244 67 0 chr9 100516527 100516617 -17346010 + MIR3 SINE MIR 102 197 -11 507 263 95 7 chr9 100516628 100516765 -17345862 - MIR SINE MIR -5 257 109 654 216 11 40 chr9 100516786 100516962 -17345665 + MER34 LTR ERV1 1 171 -371 426 202 73 56 chr9 100517047 100517225 -17345402 + MER34 LTR ERV1 355 535 -7 259 286 48 24 chr9 100517230 100517314 -17345313 - MIR SINE MIR -175 87 2 2271 84 3 10 chr9 100517421 100517730 -17344897 + AluSc SINE Alu 1 307 -2 492 265 19 0 chr9 100517966 100518109 -17344518 - MIR SINE MIR -67 141 34 565 290 136 6 chr9 100518602 100518771 -17343856 + MER91A DNA MER1_type 5 195 -1 1998 142 3 0 chr9 100518989 100519298 -17343329 - AluSq SINE Alu -3 310 1 432 249 16 17 chr9 100519308 100519437 -17343190 - L1ME1 LINE L1 -3 6331 6046 2030 130 0 10 chr9 100519440 100519741 -17342886 + AluSx SINE Alu 1 298 -14 1083 129 36 26 chr9 100519765 100519812 -17342815 + MER3 DNA MER1_type 6 54 -155 547 191 131 71 chr9 100519812 100519995 -17342632 - MER3 DNA MER1_type 0 209 16 2317 63 3 3 chr9 100520045 100520347 -17342280 - AluY SINE Alu -9 302 1 2034 129 13 3 chr9 100520361 100520671 -17341956 - AluSq SINE Alu 0 313 1 717 216 0 20 chr9 100520712 100520860 -17341767 + AluJo SINE Alu 2 146 -166 1841 148 0 13 chr9 100520864 100521162 -17341465 + AluSx SINE Alu 5 298 -14 1962 158 0 0 chr9 100521181 100521492 -17341135 - AluJb SINE Alu -14 298 1 253 221 44 0 chr9 100521493 100521561 -17341066 - L1ME1 LINE L1 -215 5949 5879 308 231 154 0 chr9 100521562 100521653 -17340974 + L2 LINE L2 3209 3313 0 468 350 21 16 chr9 100521711 100521905 -17340722 - MIR3 SINE MIR -13 195 1 2249 92 0 7 chr9 100522246 100522540 -17340087 - AluSg SINE Alu -18 292 1 248 235 29 0 chr9 100522650 100522718 -17339909 + AluSg/x SINE Alu 65 134 -166 3699 139 49 24 chr9 100522820 100523563 -17339064 - LTR1B LTR ERV1 0 785 1 261 57 0 0 chr9 100524660 100524695 -17337932 + (TG)n Simple_repeat Simple_repeat 1 35 0 492 188 0 0 chr9 100524704 100524784 -17337843 - AluJb SINE Alu -30 282 203 1626 184 3 48 chr9 100524785 100525101 -17337526 + AluJo SINE Alu 1 302 -10 2189 112 3 10 chr9 100525382 100525687 -17336940 - AluSq SINE Alu -10 303 1 2469 207 68 65 chr9 100525738 100525930 -17336697 - L1M4 LINE L1 -2191 3955 3765 1929 96 59 11 chr9 100525930 100526200 -17336427 - AluSx SINE Alu -29 283 1 2469 207 68 65 chr9 100526200 100526476 -17336151 - L1M4 LINE L1 -2381 3765 3492 1557 185 3 60 chr9 100526476 100526795 -17335832 - AluJo SINE Alu -11 301 1 2469 207 68 65 chr9 100526795 100526816 -17335811 - L1M4 LINE L1 -2654 3492 3473 2052 105 3 18 chr9 100526816 100527127 -17335500 + AluSg SINE Alu 1 307 0 2469 207 68 65 chr9 100527127 100527277 -17335350 - L1M4 LINE L1 -2673 3473 3325 1713 130 24 34 chr9 100527277 100527569 -17335058 - AluSx SINE Alu -23 289 1 2469 207 68 65 chr9 100527569 100527638 -17334989 - L1M4 LINE L1 -2821 3325 3258 261 0 0 0 chr9 100527638 100527667 -17334960 + (TG)n Simple_repeat Simple_repeat 2 30 0 2469 207 68 65 chr9 100527667 100527976 -17334651 - L1M4 LINE L1 -2888 3258 2929 2266 76 0 0 chr9 100527983 100528258 -17334369 - AluSx SINE Alu -14 298 24 394 257 73 55 chr9 100528258 100528280 -17334347 - L1MB1 LINE L1 -283 5906 5885 675 228 76 40 chr9 100528280 100528530 -17334097 - L1ME3A LINE L1 -286 5884 5626 2328 97 10 0 chr9 100528656 100528956 -17333671 - AluSx SINE Alu -9 303 1 2297 110 3 0 chr9 100529207 100529515 -17333112 - AluSx SINE Alu -3 309 1 240 392 115 0 chr9 100529767 100529897 -17332730 - L2 LINE L2 -12 3260 3116 2572 34 0 3 chr9 100530608 100530906 -17331721 - AluY SINE Alu -14 297 1 29 28 0 0 chr9 100531860 100531896 -17330731 + AT_rich Low_complexity Low_complexity 1 36 0 2314 88 20 0 chr9 100532936 100533232 -17329395 - AluSg SINE Alu -8 302 1 21 0 0 0 chr9 100533957 100533978 -17328649 + AT_rich Low_complexity Low_complexity 1 21 0 544 294 61 25 chr9 100534036 100534233 -17328394 + MIR SINE MIR 9 212 -50 2310 84 3 3 chr9 100536822 100537121 -17325506 + AluSg1 SINE Alu 1 299 -10 445 265 37 79 chr9 100537553 100537742 -17324885 + MIR SINE MIR 82 262 0 211 200 44 0 chr9 100538206 100538251 -17324376 - MIR SINE MIR -105 157 111 21 36 0 0 chr9 100538393 100538421 -17324206 + AT_rich Low_complexity Low_complexity 1 28 0 690 116 11 0 chr9 100539026 100539121 -17323506 + FLAM_C SINE Alu 24 119 -24 1156 331 87 42 chr9 100539397 100540510 -17322117 + L2 LINE L2 2090 3266 -6 32 0 0 0 chr9 100540593 100540625 -17322002 + AT_rich Low_complexity Low_complexity 1 32 0 489 102 51 20 chr9 100540836 100540934 -17321693 - L1MB8 LINE L1 -1 6177 6077 322 246 56 70 chr9 100540941 100541069 -17321558 + MIR3 SINE MIR 56 182 -26 269 336 68 32 chr9 100541346 100541566 -17321061 + L2 LINE L2 2832 3059 -213 236 259 0 19 chr9 100541669 100541723 -17320904 - L2 LINE L2 -211 3061 3009 3844 176 54 30 chr9 100541728 100542704 -17319923 + L1MB8 LINE L1 5176 6173 -5 588 141 25 8 chr9 100542722 100542843 -17319784 + GA-rich Low_complexity Low_complexity 2 124 0 620 197 16 0 chr9 100542847 100542974 -17319653 + MLT1F LTR MaLR 414 542 0 209 224 20 0 chr9 100543627 100543676 -17318951 + L2 LINE L2 3169 3218 -95 303 232 74 21 chr9 100543759 100543854 -17318773 + L1ME LINE L1 5727 5826 -344 180 0 0 0 chr9 100543856 100543876 -17318751 + (T)n Simple_repeat Simple_repeat 1 20 0 1006 182 6 6 chr9 100543885 100544055 -17318572 - AluJb SINE Alu -130 182 13 209 173 19 19 chr9 100544480 100544532 -17318095 + A-rich Low_complexity Low_complexity 2 53 0 1728 129 11 26 chr9 100544948 100545219 -17317408 - AluSx SINE Alu -11 301 35 333 150 0 0 chr9 100545842 100545889 -17316738 + (TA)n Simple_repeat Simple_repeat 1 50 -10 2177 132 3 0 chr9 100545889 100546192 -17316435 + AluSp SINE Alu 2 305 -8 333 150 0 0 chr9 100546192 100546204 -17316423 + (TA)n Simple_repeat Simple_repeat 49 60 0 228 67 0 0 chr9 100546229 100546259 -17316368 + (CA)n Simple_repeat Simple_repeat 2 31 0 1977 161 3 6 chr9 100546543 100546854 -17315773 + AluJb SINE Alu 1 310 -2 36 23 0 0 chr9 100547174 100547217 -17315410 + AT_rich Low_complexity Low_complexity 1 43 0 2531 59 3 0 chr9 100547328 100547631 -17314996 + AluY SINE Alu 1 304 -7 286 290 84 0 chr9 100547648 100547755 -17314872 + MIR SINE MIR 38 153 -109 292 319 11 0 chr9 100547828 100547919 -17314708 + MIR3 SINE MIR 110 201 -7 1828 268 74 82 chr9 100548380 100549340 -17313287 - L2 LINE L2 -414 2900 1949 2166 98 7 7 chr9 100549546 100549842 -17312785 + AluSx SINE Alu 1 296 -16 2306 80 0 3 chr9 100549994 100550303 -17312324 + AluSq SINE Alu 1 308 0 576 238 106 12 chr9 100550318 100550478 -17312149 - MIR SINE MIR 0 262 88 536 308 40 0 chr9 100550531 100550758 -17311869 - L1ME LINE L1 -348 5773 5538 554 308 108 71 chr9 100551291 100551781 -17310846 - L2 LINE L2 -1 3312 2805 540 281 57 37 chr9 100552035 100552667 -17309960 - L1MDa LINE L1 -4822 1393 796 23 0 0 0 chr9 100553348 100553371 -17309256 + AT_rich Low_complexity Low_complexity 1 23 0 1805 177 17 0 chr9 100555159 100555458 -17307169 - AluJb SINE Alu -8 304 1 2124 124 7 23 chr9 100555516 100555823 -17306804 + AluSx SINE Alu 1 302 -10 675 148 10 0 chr9 100555917 100556018 -17306609 + FRAM SINE Alu 1 96 -80 634 115 48 0 chr9 100556018 100556122 -17306505 + PRIMA41-int LTR ERV1 6093 6201 -1555 1705 131 0 19 chr9 100556122 100556389 -17306238 - LTR8 LTR ERV1 0 691 430 565 119 12 0 chr9 100556390 100556474 -17306153 + FAM SINE Alu 83 167 -18 2380 98 7 0 chr9 100556484 100556791 -17305836 + AluSg SINE Alu 1 309 -1 479 255 154 5 chr9 100557656 100557844 -17304783 + MIR SINE MIR 35 250 -12 24 53 0 0 chr9 100557960 100557998 -17304629 + AT_rich Low_complexity Low_complexity 1 38 0 2305 108 0 10 chr9 100558386 100558693 -17303934 - AluSx SINE Alu -8 304 1 225 0 0 0 chr9 100559400 100559425 -17303202 + (T)n Simple_repeat Simple_repeat 1 25 0 1494 228 60 20 chr9 100559425 100559825 -17302802 - LTR40a LTR ERVL -103 416 1 1887 156 7 19 chr9 100559902 100560210 -17302417 - AluJb SINE Alu -8 304 1 1910 138 14 10 chr9 100560288 100560577 -17302050 + AluSx SINE Alu 1 290 -22 2329 100 3 0 chr9 100560582 100560882 -17301745 + AluSx SINE Alu 1 301 -11 362 162 81 0 chr9 100560882 100560956 -17301671 + MER58 DNA MER1_type 181 260 -2160 427 94 0 0 chr9 100560998 100561062 -17301565 - L1MA5 LINE L1 -2 7000 6937 13934 164 34 28 chr9 100561073 100562418 -17300209 - L1MA5 LINE L1 -255 6747 5411 2229 128 0 0 chr9 100562418 100562715 -17299912 - AluSx SINE Alu -15 297 1 13934 164 34 28 chr9 100562715 100562870 -17299757 - L1MA5 LINE L1 -1591 5411 5258 1931 105 4 0 chr9 100562870 100563117 -17299510 - AluSc SINE Alu -23 286 39 13934 164 34 28 chr9 100563117 100565377 -17297250 - L1MA5 LINE L1 -1744 5258 2994 988 39 16 8 chr9 100565377 100565505 -17297122 - AluY SINE Alu -2 309 181 5615 213 18 18 chr9 100565505 100566875 -17295752 - L1MA5 LINE L1 -3848 3000 1629 1922 154 3 14 chr9 100566875 100567168 -17295459 - AluSx SINE Alu -22 290 1 5615 213 18 18 chr9 100567168 100567359 -17295268 - L1MA5 LINE L1 -5219 1629 1439 5226 70 42 19 chr9 100567634 100568377 -17294250 + SVA Other Other 626 1385 -1 2416 98 0 0 chr9 100568442 100568748 -17293879 + AluSg1 SINE Alu 1 306 -3 1757 171 16 20 chr9 100568917 100569222 -17293405 - AluJb SINE Alu -8 304 1 729 274 34 4 chr9 100569476 100569747 -17292880 - L1ME LINE L1 -559 5611 5333 967 178 6 0 chr9 100569748 100569911 -17292716 - FRAM SINE Alu -13 163 1 523 215 20 35 chr9 100569918 100570118 -17292509 - L1ME LINE L1 -843 5303 5107 2294 108 7 0 chr9 100570158 100570464 -17292163 + AluSx SINE Alu 1 308 -4 790 237 112 19 chr9 100570469 100570684 -17291943 + MIR SINE MIR 28 262 0 486 283 65 22 chr9 100570726 100571002 -17291625 - L1ME LINE L1 -1112 5034 4747 1054 280 170 17 chr9 100571101 100571512 -17291115 + L2 LINE L2 2840 3313 0 2860 108 31 14 chr9 100571638 100572084 -17290543 - L1PA16 LINE L1 -3 6163 5710 735 124 11 8 chr9 100571979 100572113 -17290514 - L1MC/D LINE L1 -354 5814 5677 358 256 75 44 chr9 100572474 100572634 -17289993 + MER5A DNA MER1_type 22 186 -3 * 687 217 8 0 chr9 100572521 100572650 -17289977 - MER5A DNA MER1_type -58 131 2 270 247 103 31 chr9 100573304 100573401 -17289226 + MIR SINE MIR 9 112 -150 2460 196 40 12 chr9 100574520 100574627 -17288000 - L1MC2 LINE L1 -4 7985 7883 1659 134 34 75 chr9 100574627 100574948 -17287679 - AluJo SINE Alu -4 308 1 2460 196 40 12 chr9 100574948 100575363 -17287264 - L1MC2 LINE L1 -106 7883 6238 473 241 168 21 chr9 100575498 100575689 -17286938 + MIR SINE MIR 37 255 -7 260 385 39 39 chr9 100577375 100577554 -17285073 + L2 LINE L2 2921 3099 -173 23 68 0 0 chr9 100577887 100577931 -17284696 + AT_rich Low_complexity Low_complexity 1 44 0 805 325 87 43 chr9 100578656 100579186 -17283441 + L2 LINE L2 2274 2826 -488 445 224 9 56 chr9 100579202 100579309 -17283318 - L2 LINE L2 0 3313 3212 980 211 128 26 chr9 100579875 100580187 -17282440 + MER2 DNA MER2_type 1 344 0 3344 154 23 4 chr9 100580224 100580787 -17281840 + MER6A DNA MER2_type 32 605 0 1774 75 0 18 chr9 100580915 100581143 -17281484 + AluSg1 SINE Alu 1 224 -85 769 254 45 41 chr9 100582299 100582519 -17280108 + MIR SINE MIR 8 228 -34 2398 78 0 0 chr9 100582585 100582881 -17279746 - AluSg SINE Alu -14 296 1 360 0 0 0 chr9 100583057 100583073 -17279554 + (CA)n Simple_repeat Simple_repeat 1 56 0 360 0 0 0 chr9 100583073 100583113 -17279514 + (CA)n Simple_repeat Simple_repeat 1 40 0 2002 130 30 7 chr9 100583134 100583434 -17279193 + AluJb SINE Alu 1 307 -5 216 67 0 0 chr9 100583514 100583544 -17279083 + (CA)n Simple_repeat Simple_repeat 2 31 0 362 200 24 0 chr9 100583586 100583671 -17278956 - L1MA3 LINE L1 0 6305 6219 820 101 22 7 chr9 100583671 100583809 -17278818 - L1MA4 LINE L1 -133 6167 6028 476 311 48 18 chr9 100583809 100583976 -17278651 - MIR SINE MIR -63 145 9 2336 116 0 0 chr9 100584291 100584602 -17278025 - AluSx SINE Alu -1 311 1 30 27 0 0 chr9 100584602 100584639 -17277988 + AT_rich Low_complexity Low_complexity 1 37 0 1314 258 113 2 chr9 100584734 100585134 -17277493 - L2 LINE L2 -2536 778 335 6948 140 44 2 chr9 100585282 100586457 -17276170 + Tigger3b DNA MER2_type 1 1225 -6 384 260 60 85 chr9 100587034 100587196 -17275431 + MIR SINE MIR 28 184 -78 2484 70 0 0 chr9 100587196 100587498 -17275129 + AluY SINE Alu 1 302 -9 384 260 60 85 chr9 100587498 100587570 -17275057 + MIR SINE MIR 184 256 -6 194 247 24 129 chr9 100587682 100587732 -17274895 - MIR SINE MIR -109 153 113 738 149 9 0 chr9 100587732 100587876 -17274751 + FLAM_C SINE Alu 2 146 0 194 247 24 129 chr9 100587876 100587909 -17274718 - MIR SINE MIR -149 113 78 1137 184 37 9 chr9 100587953 100588171 -17274456 - MER58A DNA MER1_type 0 224 1 279 270 34 11 chr9 100588705 100588794 -17273833 + MIR SINE MIR 1 91 -171 2262 84 3 7 chr9 100588921 100589217 -17273410 - AluSx SINE Alu -17 295 1 410 177 348 19 chr9 100589396 100589554 -17273073 - MIR SINE MIR -6 256 47 315 65 0 0 chr9 100590705 100590751 -17271876 + (TG)n Simple_repeat Simple_repeat 2 47 0 1836 87 6 93 chr9 100591183 100591527 -17271100 - L1MA2 LINE L1 0 6304 5991 1895 134 3 11 chr9 100592170 100592454 -17270173 + AluJb SINE Alu 9 290 -22 21 0 0 0 chr9 100592463 100592484 -17270143 + AT_rich Low_complexity Low_complexity 1 21 0 221 379 93 0 chr9 100593162 100593323 -17269304 + L2 LINE L2 2871 3046 -226 570 228 37 43 chr9 100593398 100593560 -17269067 + MIR SINE MIR 1 161 -101 486 167 0 0 chr9 100594270 100594348 -17268279 + LTR40b LTR ERVL 385 462 0 2358 165 24 34 chr9 100595808 100596142 -17266485 - L1MA5 LINE L1 -2 6298 5969 2214 110 3 0 chr9 100596142 100596433 -17266194 - AluSg SINE Alu -18 292 1 2358 165 24 34 chr9 100596433 100596602 -17266025 - L1MA5 LINE L1 -331 5969 5800 2938 146 28 10 chr9 100596602 100597110 -17265517 - L1MA5 LINE L1 -1071 5075 4559 2175 199 148 26 chr9 100597376 100598006 -17264621 + L1ME1 LINE L1 5435 6064 -102 2175 103 3 0 chr9 100598674 100598987 -17263640 + AluSx SINE Alu 1 314 0 182 362 29 38 chr9 100599621 100599726 -17262901 - MIR SINE MIR -4 258 155 223 317 37 12 chr9 100599890 100599972 -17262655 + MIR SINE MIR 67 150 -112 491 234 41 74 chr9 100600305 100600643 -17261984 + L1ME LINE L1 2174 2500 -3646 2064 124 0 0 chr9 100601052 100601327 -17261300 - AluSx SINE Alu -37 275 1 331 313 168 26 chr9 100601595 100602090 -17260537 + L2 LINE L2 1464 2028 -1286 6125 207 90 43 chr9 100602372 100603238 -17259389 + L1ME LINE L1 3280 4104 -2062 1497 196 36 11 chr9 100603238 100603364 -17259263 + AluJb SINE Alu 1 122 -190 351 0 0 0 chr9 100603364 100603403 -17259224 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1497 196 36 11 chr9 100603403 100603557 -17259070 + AluJb SINE Alu 122 288 -24 6125 207 90 43 chr9 100603557 100603672 -17258955 + L1ME LINE L1 4104 4212 -1954 2421 78 3 0 chr9 100603672 100603968 -17258659 + AluSp SINE Alu 1 297 -16 6125 207 90 43 chr9 100603968 100604616 -17258011 + L1ME LINE L1 4212 4828 -1338 2241 92 0 13 chr9 100604616 100604920 -17257707 + AluSg SINE Alu 1 300 -10 6125 207 90 43 chr9 100604920 100605488 -17257139 + L1ME LINE L1 4828 5587 -579 1852 189 0 3 chr9 100605488 100605800 -17256827 - AluJo SINE Alu -1 311 1 1361 97 0 0 chr9 100605805 100605981 -17256646 - AluY SINE Alu -8 303 128 983 149 34 6 chr9 100605981 100606156 -17256471 + L1ME LINE L1 5590 5769 -397 1704 179 3 24 chr9 100606235 100606532 -17256095 + AluJb SINE Alu 1 291 -21 2470 69 0 3 chr9 100606537 100606841 -17255786 + AluSg SINE Alu 1 303 -7 649 151 48 32 chr9 100607079 100607205 -17255422 + AluJb SINE Alu 1 128 -184 462 324 42 28 chr9 100607693 100607906 -17254721 - MIR SINE MIR 0 262 47 1466 166 27 34 chr9 100608032 100608047 -17254580 - AluJb SINE Alu -17 295 281 243 61 0 0 chr9 100608047 100608080 -17254547 + (TG)n Simple_repeat Simple_repeat 1 33 0 1466 166 27 34 chr9 100608080 100608360 -17254267 - AluJb SINE Alu -31 281 2 3756 104 12 27 chr9 100608813 100609398 -17253229 - L1MA2 LINE L1 -254 6050 5475 2023 146 0 3 chr9 100609402 100609704 -17252923 - AluSx SINE Alu -11 301 1 9386 134 112 34 chr9 100609704 100609787 -17252840 - L1M1 LINE L1 -5133 2432 2357 6273 46 1 3 chr9 100609787 100610565 -17252062 + L1PA5 LINE L1 5374 6150 -4 9386 134 112 34 chr9 100610565 100610592 -17252035 - L1M1 LINE L1 -5208 2357 2334 2384 85 0 0 chr9 100610592 100610885 -17251742 + AluSx SINE Alu 7 299 -13 9386 134 112 34 chr9 100610885 100612445 -17250182 - L1M1 LINE L1 -5231 2334 629 198 325 153 19 chr9 100612824 100612958 -17249669 + MIR SINE MIR 47 206 -56 194 0 0 37 chr9 100612958 100612985 -17249642 + (CAA)n Simple_repeat Simple_repeat 2 27 0 198 325 153 19 chr9 100612985 100613007 -17249620 + MIR SINE MIR 206 224 -38 222 37 0 0 chr9 100613503 100613530 -17249097 + (CA)n Simple_repeat Simple_repeat 2 28 0 1689 162 25 0 chr9 100613534 100613812 -17248815 - AluJo SINE Alu -27 285 1 440 286 39 39 chr9 100614056 100614234 -17248393 + MER5A DNA MER1_type 2 179 -10 2200 129 22 22 chr9 100614253 100614616 -17248011 + THE1C LTR MaLR 2 364 -11 1328 155 0 26 chr9 100614627 100614853 -17247774 + AluJb SINE Alu 87 306 -6 26 0 0 0 chr9 100614862 100614888 -17247739 + AT_rich Low_complexity Low_complexity 1 26 0 225 209 88 66 chr9 100614914 100615005 -17247622 - MIR SINE MIR -84 178 86 2503 62 0 3 chr9 100615760 100616064 -17246563 - AluY SINE Alu -8 303 1 3254 145 43 34 chr9 100616551 100617018 -17245609 + L1MB2 LINE L1 5538 6014 -157 2201 79 41 3 chr9 100617018 100617308 -17245319 - AluY SINE Alu -10 301 1 3254 145 43 34 chr9 100617308 100617467 -17245160 + L1MB2 LINE L1 6014 6170 -1 190 153 141 141 chr9 100617535 100617620 -17245007 - MIR3 SINE MIR -16 192 108 186 43 0 0 chr9 100617878 100617901 -17244726 + (TG)n Simple_repeat Simple_repeat 2 24 0 294 265 60 66 chr9 100618070 100618221 -17244406 + L1ME3 LINE L1 5511 5582 -580 272 273 152 0 chr9 100618223 100618322 -17244305 + MER5A DNA MER1_type 69 182 -7 358 249 106 57 chr9 100618357 100618601 -17244026 + L1ME3 LINE L1 5680 5943 -219 351 0 0 0 chr9 100618601 100618640 -17243987 + (TG)n Simple_repeat Simple_repeat 2 40 0 358 249 106 57 chr9 100618640 100618696 -17243931 + L1ME3 LINE L1 5943 5995 -167 210 171 0 0 chr9 100618696 100618731 -17243896 + A-rich Low_complexity Low_complexity 1 35 0 435 38 0 0 chr9 100619061 100619114 -17243513 + (CA)n Simple_repeat Simple_repeat 2 54 0 683 241 14 102 chr9 100619372 100619666 -17242961 - L2 LINE L2 0 3313 3046 476 354 141 29 chr9 100619887 100620504 -17242123 - L2 LINE L2 -1 3271 2589 21 36 0 0 chr9 100621838 100621866 -17240761 + AT_rich Low_complexity Low_complexity 1 28 0 191 300 75 25 chr9 100621937 100622017 -17240610 + MIR SINE MIR 84 167 -95 298 291 0 39 chr9 100622184 100622311 -17240316 + L1MC5 LINE L1 7792 7913 -48 386 270 20 5 chr9 100622554 100622716 -17239911 - MIR SINE MIR -5 257 15 244 291 45 33 chr9 100622853 100622968 -17239659 + MIR SINE MIR 26 138 -70 327 274 230 0 chr9 100623045 100623158 -17239469 + L2 LINE L2 3125 3263 -9 419 310 82 83 chr9 100623437 100624016 -17238611 + L2 LINE L2 2686 3265 -7 261 180 0 0 chr9 100624206 100624256 -17238371 + A-rich Low_complexity Low_complexity 1 50 0 382 230 84 38 chr9 100625139 100625332 -17237295 + MIR SINE MIR 19 221 -41 325 201 0 188 chr9 100625888 100626042 -17236585 - L2 LINE L2 0 3313 3189 2328 98 3 3 chr9 100626254 100626560 -17236067 + AluSg SINE Alu 1 306 -4 806 283 141 43 chr9 100626728 100627195 -17235432 + LTR67 LTR ERVL 44 556 -1 195 214 0 0 chr9 100627196 100627238 -17235389 - L2 LINE L2 -296 2976 2935 435 309 35 35 chr9 100627254 100627484 -17235143 + MIR SINE MIR 7 236 -26 1970 158 0 0 chr9 100628015 100628313 -17234314 - AluJb SINE Alu -14 298 1 275 259 25 0 chr9 100628965 100629046 -17233581 - MIR SINE MIR -85 177 95 245 205 51 64 chr9 100629637 100629715 -17232912 - MIR SINE MIR -22 240 164 1599 178 29 52 chr9 100630366 100630675 -17231952 + AluJo SINE Alu 1 302 -10 1988 122 3 56 chr9 100631730 100631852 -17230775 + AluJb SINE Alu 1 128 -184 189 0 0 0 chr9 100631852 100631873 -17230754 + (TAA)n Simple_repeat Simple_repeat 2 22 0 1988 122 3 56 chr9 100631873 100632070 -17230557 + AluJb SINE Alu 128 303 -9 2432 68 3 0 chr9 100632697 100632992 -17229635 + AluY SINE Alu 5 300 -11 262 212 66 76 chr9 100633342 100633540 -17229087 - L1ME4a LINE L1 0 6121 5926 301 298 138 0 chr9 100634213 100634307 -17228320 - L2 LINE L2 -4 3309 3203 287 307 48 36 chr9 100634324 100634490 -17228137 + MIR SINE MIR 90 257 -5 2270 116 0 0 chr9 100634621 100634915 -17227712 + AluSx SINE Alu 1 294 -18 2233 115 0 0 chr9 100634982 100635278 -17227349 + AluSx SINE Alu 1 296 -16 2099 160 0 0 chr9 100637483 100637795 -17224832 + AluJb SINE Alu 1 312 0 682 221 138 10 chr9 100637946 100638141 -17224486 + MIR SINE MIR 20 239 -23 744 183 118 142 chr9 100638164 100638502 -17224125 + MER46C DNA MER2_type 4 333 -5 2080 124 0 7 chr9 100638691 100639002 -17223625 + AluSx SINE Alu 1 309 0 1979 115 7 28 chr9 100639006 100639328 -17223299 + AluSx SINE Alu 1 316 0 937 294 60 50 chr9 100639793 100640075 -17222552 + L3 LINE CR1 857 1148 -429 1941 132 40 0 chr9 100640075 100640371 -17222256 + AluSg SINE Alu 1 308 -2 937 294 60 50 chr9 100640371 100640623 -17222004 + L3 LINE CR1 1148 1396 -181 2172 84 59 3 chr9 100640696 100640983 -17221644 + AluSq SINE Alu 1 303 -10 2311 100 17 0 chr9 100641077 100641377 -17221250 + AluSp SINE Alu 1 305 -8 558 237 54 55 chr9 100642145 100642446 -17220181 + L1MC4a LINE L1 5724 6017 -104 309 89 0 0 chr9 100642763 100642808 -17219819 + (CA)n Simple_repeat Simple_repeat 2 46 0 828 226 24 71 chr9 100642839 100642905 -17219722 - MIR SINE MIR -22 240 172 1961 165 0 3 chr9 100642905 100643214 -17219413 + AluJb SINE Alu 1 308 -4 828 226 24 71 chr9 100643214 100643399 -17219228 - MIR SINE MIR -90 172 1 273 75 0 0 chr9 100645181 100645221 -17217406 + (CGG)n Simple_repeat Simple_repeat 2 41 0 26 0 0 0 chr9 100645405 100645431 -17217196 + GC_rich Low_complexity Low_complexity 1 26 0 180 161 0 0 chr9 100645977 100646008 -17216619 - MIR SINE MIR -115 147 117 273 230 47 108 chr9 100646258 100646406 -17216221 + MIR SINE MIR 121 259 -3 240 325 18 6 chr9 100646883 100647052 -17215575 + (TG)n Simple_repeat Simple_repeat 2 172 0 262 214 181 60 chr9 100647621 100647713 -17214914 + MIR SINE MIR 31 110 -152 2241 102 0 0 chr9 100647713 100648008 -17214619 - AluSq SINE Alu -18 295 1 262 214 181 60 chr9 100648008 100648128 -17214499 + MIR SINE MIR 110 262 0 304 276 57 0 chr9 100648721 100648826 -17213801 - MIR SINE MIR -2 260 150 897 168 28 10 chr9 100648826 100649108 -17213519 - MLT1A1 LTR MaLR 0 365 3 526 204 71 0 chr9 100649109 100649222 -17213405 - MIR SINE MIR -107 155 35 2306 93 0 7 chr9 100649563 100649852 -17212775 + AluSg SINE Alu 1 287 -23 316 299 127 0 chr9 100649878 100650012 -17212615 - MIR SINE MIR -25 237 87 604 230 163 97 chr9 100650426 100650684 -17211943 + L1ME4a LINE L1 5327 5566 -555 2286 100 3 0 chr9 100650684 100650983 -17211644 - AluSp SINE Alu -13 300 1 604 230 163 97 chr9 100650983 100651014 -17211613 + L1ME4a LINE L1 5566 5594 -527 1885 148 7 29 chr9 100651014 100651324 -17211303 + AluJb SINE Alu 1 303 -9 604 230 163 97 chr9 100651324 100651499 -17211128 + L1ME4a LINE L1 5594 5823 -298 890 73 73 8 chr9 100653206 100653329 -17209298 - AluSc SINE Alu -178 131 1 196 146 146 0 chr9 100653567 100653615 -17209012 - MIR SINE MIR -75 187 133 189 0 0 0 chr9 100653821 100653842 -17208785 + (A)n Simple_repeat Simple_repeat 1 21 0 1973 145 7 7 chr9 100653854 100654158 -17208469 + AluSx SINE Alu 7 310 -2 530 238 29 17 chr9 100654234 100654406 -17208221 + L1ME4a LINE L1 5939 6112 -9 243 237 0 17 chr9 100654920 100654979 -17207648 - MIR SINE MIR -10 252 195 1622 153 57 8 chr9 100655017 100655279 -17207348 - AluJo SINE Alu -31 281 7 191 379 10 10 chr9 100655307 100655410 -17207217 - MIR SINE MIR -93 169 67 568 239 145 0 chr9 100655514 100655722 -17206905 + MIR SINE MIR 20 255 -7 231 295 101 27 chr9 100656109 100656258 -17206369 - MIR3 SINE MIR -19 189 30 1815 88 40 0 chr9 100656489 100656770 -17205857 + AluSx SINE Alu 47 336 0 215 254 74 57 chr9 100657209 100657331 -17205296 + MIR SINE MIR 60 183 -79 472 281 300 5 chr9 100657332 100657994 -17204633 - L2 LINE L2 -2 3311 2446 289 343 143 28 chr9 100658017 100658268 -17204359 - L2 LINE L2 0 3272 2993 210 71 0 0 chr9 100658318 100658346 -17204281 + (TAG)n Simple_repeat Simple_repeat 3 30 0 747 231 49 53 chr9 100658346 100658582 -17204045 - MIR SINE MIR -9 253 17 399 284 9 9 chr9 100658911 100659027 -17203600 + MIR SINE MIR 34 149 -59 2022 115 0 11 chr9 100659040 100659318 -17203309 - AluSx SINE Alu -18 294 20 303 204 0 9 chr9 100660106 100660199 -17202428 - MER53 DNA DNA 0 189 1 302 286 17 114 chr9 100661228 100661280 -17201347 - MIR3 SINE MIR -9 199 144 2454 77 3 0 chr9 100661280 100661580 -17201047 + AluSp SINE Alu 1 301 -12 302 286 17 114 chr9 100661580 100661702 -17200925 - MIR3 SINE MIR -64 144 42 572 310 95 30 chr9 100662416 100662816 -17199811 - L2 LINE L2 -36 3277 2852 2006 142 10 10 chr9 100663247 100663557 -17199070 - AluSx SINE Alu -2 310 1 2069 134 7 0 chr9 100663708 100663999 -17198628 + AluSx SINE Alu 1 293 -19 2139 129 7 0 chr9 100664626 100664928 -17197699 + AluSx SINE Alu 1 304 -8 27 0 0 0 chr9 100665338 100665365 -17197262 + AT_rich Low_complexity Low_complexity 1 27 0 477 263 70 62 chr9 100665700 100665943 -17196684 - MIR SINE MIR -1 261 17 415 301 115 14 chr9 100666532 100666741 -17195886 + MIR SINE MIR 21 250 -12 338 219 105 18 chr9 100667202 100667316 -17195311 + MIR SINE MIR 31 154 -108 359 283 86 25 chr9 100667487 100667572 -17195055 - L1MC4a LINE L1 -1881 5927 5849 2265 118 0 0 chr9 100667572 100667877 -17194750 - AluSq SINE Alu -8 305 1 2232 163 42 28 chr9 100667884 100668356 -17194271 - L1MB7 LINE L1 0 6184 5706 359 283 86 25 chr9 100668356 100668460 -17194167 - L1MC4a LINE L1 -1964 5844 5718 1683 151 41 4 chr9 100669354 100669646 -17192981 - AluSx SINE Alu 0 302 1 1994 113 18 0 chr9 100669675 100669949 -17192678 + AluSx SINE Alu 21 299 -13 2462 59 0 37 chr9 100669950 100670271 -17192356 + AluY SINE Alu 1 309 -2 21 0 0 0 chr9 100670483 100670504 -17192123 + AT_rich Low_complexity Low_complexity 1 21 0 2103 90 48 3 chr9 100670846 100671136 -17191491 + AluSx SINE Alu 1 303 -9 484 215 52 75 chr9 100671263 100671427 -17191200 - MLT1J1 LTR MaLR -299 147 1 392 305 30 30 chr9 100671632 100671799 -17190828 + L1ME4a LINE L1 5430 5596 -525 1065 155 0 6 chr9 100671801 100671969 -17190658 + FRAM SINE Alu 1 164 -12 880 252 137 12 chr9 100671974 100672390 -17190237 + L1ME4a LINE L1 5643 6110 -11 472 276 63 1 chr9 100672445 100672591 -17190036 - MIR SINE MIR -41 167 11 310 296 78 43 chr9 100672880 100672995 -17189632 - L2 LINE L2 0 3272 3154 891 113 0 50 chr9 100673043 100673184 -17189443 - AluJo SINE Alu -178 134 1 459 208 67 8 chr9 100673292 100673412 -17189215 - MIR SINE MIR -74 188 62 199 0 0 0 chr9 100673603 100673625 -17189002 + (TTTA)n Simple_repeat Simple_repeat 2 76 0 2249 73 22 0 chr9 100673625 100673898 -17188729 - AluSc SINE Alu -1 300 1 879 118 0 8 chr9 100674242 100674361 -17188266 + AluSq/x SINE Alu 1 118 -194 259 322 78 43 chr9 100674430 100674545 -17188082 + L2 LINE L2 3154 3272 0 632 94 0 0 chr9 100674590 100674675 -17187952 + AluSg/x SINE Alu 218 302 -8 1067 202 211 39 chr9 100674691 100675125 -17187502 + MLT1H LTR MaLR 1 547 -2 660 306 51 64 chr9 100675154 100675589 -17187038 - L2 LINE L2 -4 3309 2881 2241 124 0 0 chr9 100675676 100675982 -17186645 + AluSg SINE Alu 1 306 -4 3739 133 13 1 chr9 100676250 100676544 -17186083 + L1PA14 LINE L1 5180 5469 -692 2230 109 0 10 chr9 100676544 100676848 -17185779 + AluSq SINE Alu 1 301 -12 3739 133 13 1 chr9 100676848 100677188 -17185439 + L1PA14 LINE L1 5469 5829 -332 512 158 0 0 chr9 100677188 100677264 -17185363 + AluS SINE Alu 1 76 -237 3671 112 100 84 chr9 100677265 100678098 -17184529 + pTR5 LTR ERV1 871 2025 -413 311 265 10 0 chr9 100678098 100678196 -17184431 + LTR30 LTR ERV1 544 642 -80 1557 76 5 14 chr9 100678199 100678422 -17184205 + pTR5 LTR ERV1 172 392 -2046 1927 101 16 0 chr9 100678422 100678679 -17183948 + AluSx SINE Alu 47 307 -5 2399 73 0 7 chr9 100679087 100679389 -17183238 + AluY SINE Alu 1 300 -11 1810 158 16 16 chr9 100679396 100679700 -17182927 + AluJo SINE Alu 1 304 -8 2718 232 57 39 chr9 100680011 100680160 -17182467 - L1ME1 LINE L1 -5 6161 6016 1739 126 67 88 chr9 100680160 100680245 -17182382 - MLT1A1 LTR MaLR 0 365 280 2036 130 0 20 chr9 100680245 100680544 -17182083 - AluSx SINE Alu -19 293 1 1739 126 67 88 chr9 100680544 100680831 -17181796 - MLT1A1 LTR MaLR -85 280 1 2718 232 57 39 chr9 100680831 100681181 -17181446 - L1ME1 LINE L1 -150 6016 5641 1530 134 0 0 chr9 100681181 100681397 -17181230 - AluSg/x SINE Alu -11 299 84 2718 232 57 39 chr9 100681397 100681673 -17180954 - L1ME1 LINE L1 -525 5641 5371 2230 103 3 7 chr9 100681681 100681981 -17180646 - AluSq SINE Alu -14 299 1 1237 235 69 35 chr9 100681983 100682405 -17180222 - L1MC5 LINE L1 -446 7515 7080 342 272 51 62 chr9 100682490 100682685 -17179942 - HAL1 LINE L1 -1166 1341 1149 1839 154 7 7 chr9 100682755 100683040 -17179587 - AluJb SINE Alu -25 287 3 216 0 0 0 chr9 100683809 100683833 -17178794 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2085 74 0 30 chr9 100683842 100684111 -17178516 - AluY SINE Alu -50 261 1 189 344 0 0 chr9 100684537 100684601 -17178026 + L2 LINE L2 3244 3307 -6 26 50 0 0 chr9 100684632 100684672 -17177955 + AT_rich Low_complexity Low_complexity 1 40 0 2470 79 0 0 chr9 100684681 100684985 -17177642 + AluY SINE Alu 1 304 -7 2467 86 0 0 chr9 100685054 100685357 -17177270 - AluSx SINE Alu -8 304 2 2671 107 45 36 chr9 100685360 100685558 -17177069 - L1P4 LINE L1 -470 5691 5496 2071 128 0 26 chr9 100685558 100685863 -17176764 - AluSx SINE Alu -15 297 1 1921 176 0 0 chr9 100685872 100686179 -17176448 - AluJb SINE Alu -5 307 1 2671 107 45 36 chr9 100686179 100686490 -17176137 - L1P4 LINE L1 -672 5489 5171 1918 98 79 0 chr9 100686570 100686836 -17175791 + AluSq SINE Alu 1 287 -26 476 176 176 55 chr9 100686972 100687137 -17175490 - MER5A DNA MER1_type -4 185 1 231 88 0 0 chr9 100687171 100687205 -17175422 + (TCCA)n Simple_repeat Simple_repeat 2 35 0 233 284 30 0 chr9 100688112 100688179 -17174448 + L1ME LINE L1 5408 5476 -645 229 253 105 32 chr9 100688184 100688279 -17174348 + L1ME3A LINE L1 6042 6143 -27 272 259 49 56 chr9 100688343 100688486 -17174141 + L1ME LINE L1 5675 5783 -338 194 239 148 64 chr9 100689550 100689690 -17172937 + MIR SINE MIR 34 188 -67 2261 88 3 0 chr9 100691278 100691561 -17171066 + AluSc SINE Alu 1 284 -25 199 0 65 0 chr9 100691564 100691595 -17171032 + (CAAAA)n Simple_repeat Simple_repeat 5 37 0 331 174 29 29 chr9 100692684 100692753 -17169874 + AluJ/FRAM SINE Alu 228 296 -6 2394 112 0 0 chr9 100692987 100693300 -17169327 + AluSq SINE Alu 1 313 0 284 272 0 61 chr9 100693929 100693944 -17168683 - MIR3 SINE MIR -36 172 158 897 229 103 17 chr9 100693944 100694245 -17168382 + MER102a DNA MER1_type 3 329 -1 284 272 0 61 chr9 100694245 100694343 -17168284 - MIR3 SINE MIR -50 158 66 231 303 26 13 chr9 100694628 100694704 -17167923 - MIR3 SINE MIR -23 185 109 2303 107 0 0 chr9 100696025 100696324 -17166303 - AluSx SINE Alu -13 299 1 242 359 13 39 chr9 100696334 100696490 -17166137 - MIR3 SINE MIR -3 205 54 367 272 110 73 chr9 100697040 100697312 -17165315 + L3 LINE CR1 1097 1378 -199 180 217 185 64 chr9 100697323 100697382 -17165245 - MIR SINE MIR -9 253 203 2276 95 10 7 chr9 100697382 100697688 -17164939 - AluSc SINE Alu -1 308 2 180 217 185 64 chr9 100697688 100697785 -17164842 - MIR SINE MIR -59 203 78 342 240 70 10 chr9 100698512 100698612 -17164015 - L2 LINE L2 0 3313 3208 * 378 310 124 31 chr9 100698602 100698925 -17163702 + L2 LINE L2 2331 2683 -631 512 292 63 99 chr9 100699016 100699410 -17163217 + L2 LINE L2 2888 3267 -5 2213 108 19 3 chr9 100699474 100699781 -17162846 + AluSx SINE Alu 1 312 0 233 325 13 0 chr9 100700721 100700798 -17161829 + MIR3 SINE MIR 93 170 -38 2527 60 0 0 chr9 100701024 100701322 -17161305 + AluY SINE Alu 1 298 -13 245 153 34 51 chr9 100701424 100701483 -17161144 + MER103 DNA DNA 22 79 -87 319 336 31 8 chr9 100701550 100701678 -17160949 - MIR SINE MIR -120 142 12 272 274 12 0 chr9 100701697 100701781 -17160846 + MER103 DNA DNA 79 163 -3 230 354 10 0 chr9 100701938 100702034 -17160593 - MIR3 SINE MIR -5 203 107 228 313 164 8 chr9 100702541 100702669 -17159958 + MIR SINE MIR 3 150 -112 2401 104 0 0 chr9 100702706 100703013 -17159614 + AluSx SINE Alu 1 307 -5 2263 107 7 0 chr9 100703142 100703442 -17159185 + AluSg SINE Alu 1 302 -8 1000 153 0 12 chr9 100703970 100704133 -17158494 + FRAM SINE Alu 1 161 -5 247 329 42 35 chr9 100704314 100704457 -17158170 + MIR SINE MIR 48 191 -71 213 246 18 0 chr9 100704692 100704758 -17157869 - MIR SINE MIR -65 143 76 1594 160 17 61 chr9 100704838 100704983 -17157644 + AluJo SINE Alu 1 128 -184 2459 87 0 3 chr9 100704983 100705292 -17157335 + AluSq SINE Alu 1 308 -5 1594 160 17 61 chr9 100705292 100705440 -17157187 + AluJo SINE Alu 128 281 -31 537 335 108 48 chr9 100705459 100705993 -17156634 + L2 LINE L2 2465 3060 -212 1839 118 64 7 chr9 100705993 100706273 -17156354 - AluSx SINE Alu -16 296 1 537 335 108 48 chr9 100706273 100706439 -17156188 + L2 LINE L2 3060 3215 -57 292 221 39 13 chr9 100707658 100707735 -17154892 + L2 LINE L2 3223 3301 -12 378 359 62 10 chr9 100707866 100708061 -17154566 - L2 LINE L2 -177 3095 2891 289 319 21 0 chr9 100708318 100708412 -17154215 - L2 LINE L2 -35 3237 3142 252 100 0 0 chr9 100709002 100709042 -17153585 + (GA)n Simple_repeat Simple_repeat 1 40 0 226 343 38 29 chr9 100709586 100709691 -17152936 - MIR SINE MIR -62 146 41 227 295 139 23 chr9 100710579 100710708 -17151919 - MER5A DNA MER1_type -45 144 1 987 182 141 31 chr9 100710716 100710799 -17151828 - MER33 DNA MER1_type -2261 324 252 1811 145 55 0 chr9 100710799 100711089 -17151538 + AluSx SINE Alu 1 306 -6 1563 99 14 14 chr9 100711092 100711305 -17151322 + AluSg/x SINE Alu 91 303 -9 987 182 141 31 chr9 100711305 100711508 -17151119 - MER33 DNA MER1_type -2334 251 2 224 299 45 31 chr9 100711641 100711789 -17150838 - L2 LINE L2 0 3313 3080 329 182 104 0 chr9 100712060 100712137 -17150490 - MER58B DNA MER1_type -11 330 246 237 205 0 0 chr9 100712133 100712172 -17150455 - MER58B DNA MER1_type -302 39 1 * 192 366 21 0 chr9 100712415 100712508 -17150119 - L2 LINE L2 -594 2720 2626 1205 127 27 127 chr9 100712519 100712561 -17150066 + L1MB3 LINE L1 5765 5810 -373 513 84 0 0 chr9 100712561 100712632 -17149995 + (CA)n Simple_repeat Simple_repeat 2 72 0 1205 127 27 127 chr9 100712632 100712670 -17149957 + L1MB3 LINE L1 5810 5850 -333 2454 88 0 0 chr9 100712670 100712977 -17149650 + AluSp SINE Alu 1 307 -6 1205 127 27 127 chr9 100712977 100713116 -17149511 + L1MB3 LINE L1 5850 5950 -233 2199 105 14 0 chr9 100713116 100713410 -17149217 + AluSx SINE Alu 1 298 -14 1205 127 27 127 chr9 100713410 100713488 -17149139 + L1MB3 LINE L1 5950 6034 -149 1699 188 0 43 chr9 100713489 100713813 -17148814 + AluJb SINE Alu 1 310 -2 950 128 23 17 chr9 100713870 100714042 -17148585 + L1MB3 LINE L1 6011 6183 0 637 270 47 14 chr9 100714397 100714608 -17148019 + MER102b DNA MER1_type 106 323 -18 1620 187 0 10 chr9 100715264 100715564 -17147063 + AluJb SINE Alu 6 302 -10 2250 90 7 7 chr9 100715567 100715866 -17146761 + AluSx SINE Alu 1 299 -13 336 80 0 0 chr9 100715942 100715992 -17146635 - AluJo SINE Alu -6 296 247 1487 165 4 12 chr9 100716201 100716455 -17146172 - AluJo SINE Alu -50 262 11 2284 71 47 10 chr9 100716904 100717200 -17145427 + AluSx SINE Alu 1 307 -5 1880 134 44 77 chr9 100717328 100717716 -17144911 + THE1C LTR MaLR 1 375 0 24 0 0 0 chr9 100718025 100718049 -17144578 + AT_rich Low_complexity Low_complexity 1 24 0 2202 100 3 3 chr9 100718195 100718485 -17144142 - AluSx SINE Alu -22 290 1 311 294 13 19 chr9 100720301 100720439 -17142188 - MIR SINE MIR -62 146 19 271 264 69 0 chr9 100720679 100720766 -17141861 + L1MC5 LINE L1 7823 7915 -46 2269 93 3 19 chr9 100721392 100721704 -17140923 + AluY SINE Alu 1 307 -4 1494 173 71 0 chr9 100721815 100722070 -17140557 + AluJb SINE Alu 20 292 -20 2121 109 33 10 chr9 100722080 100722383 -17140244 + AluSx SINE Alu 1 310 -2 2223 112 0 37 chr9 100722397 100722720 -17139907 + AluSp SINE Alu 1 311 -2 658 198 78 16 chr9 100722722 100722965 -17139662 + L1 LINE L1 3081 3338 -2808 1314 122 6 6 chr9 100722966 100723147 -17139480 + AluSx SINE Alu 1 181 -131 396 234 120 42 chr9 100723181 100723348 -17139279 + LTR4 LTR ERV1 21 200 -396 939 247 18 21 chr9 100723534 100723813 -17138814 + LTR4 LTR ERV1 318 595 -1 923 90 0 56 chr9 100723813 100723957 -17138670 + AluSx SINE Alu 170 305 -5 4088 154 46 41 chr9 100723958 100724787 -17137840 + L1 LINE L1 3334 4166 -1980 2483 93 0 0 chr9 100724790 100725102 -17137525 + AluSx SINE Alu 1 312 0 1776 170 4 0 chr9 100725122 100725399 -17137228 + AluJb SINE Alu 1 278 -34 220 136 23 0 chr9 100725402 100725446 -17137181 + (TA)n Simple_repeat Simple_repeat 1 45 0 253 250 0 14 chr9 100725449 100725521 -17137106 + L1 LINE L1 4172 4242 -1904 4481 149 25 55 chr9 100725624 100725930 -17136697 - L1MA5 LINE L1 -29 6271 5957 2359 85 3 0 chr9 100725930 100726225 -17136402 - AluSx SINE Alu -16 296 1 4481 149 25 55 chr9 100726225 100726815 -17135812 - L1MA5 LINE L1 -343 5957 5402 865 273 53 25 chr9 100726815 100727195 -17135432 - L1M3c LINE L1 -4835 1884 1499 1185 158 28 14 chr9 100727281 100727496 -17135131 - AluJo SINE Alu -13 299 82 231 222 0 19 chr9 100727585 100727639 -17134988 - L1M3c LINE L1 -6084 635 583 315 0 0 0 chr9 100729013 100729048 -17133579 + (TG)n Simple_repeat Simple_repeat 1 35 0 2223 123 0 0 chr9 100729239 100729539 -17133088 + AluSx SINE Alu 1 300 -12 1713 173 59 110 chr9 100729743 100730139 -17132488 - MLT1C LTR MaLR 0 467 98 2006 101 18 4 chr9 100730139 100730438 -17132189 - AluSx SINE Alu 0 303 1 1713 173 59 110 chr9 100730438 100730532 -17132095 - MLT1C LTR MaLR -369 98 1 342 295 171 18 chr9 100730799 100731016 -17131611 + MIR SINE MIR 13 262 0 288 299 191 6 chr9 100731083 100731240 -17131387 + MIR SINE MIR 77 262 0 220 340 146 22 chr9 100731293 100731478 -17131149 + L2 LINE L2 2876 3083 -189 258 256 368 8 chr9 100731537 100731654 -17130973 + MIR SINE MIR 71 229 -33 1002 179 52 5 chr9 100731828 100732040 -17130587 + L1MB3 LINE L1 5962 6183 0 2043 144 3 3 chr9 100732905 100733211 -17129416 - AluSx SINE Alu -6 306 1 570 264 156 4 chr9 100733863 100734139 -17128488 + L1ME4a LINE L1 5552 5869 -252 232 230 239 9 chr9 100734226 100734339 -17128288 + L1ME LINE L1 5666 5804 -358 261 77 0 0 chr9 100734404 100734443 -17128184 - HSMAR1 DNA Mariner -1248 39 1 467 235 0 0 chr9 100734828 100734930 -17127697 + MER5A DNA MER1_type 8 109 -80 2348 65 3 10 chr9 100735193 100735487 -17127140 + AluY SINE Alu 1 292 -19 195 213 21 0 chr9 100735516 100735563 -17127064 + L2 LINE L2 3004 3051 -221 368 298 107 0 chr9 100735842 100735963 -17126664 + L2 LINE L2 3180 3313 0 226 359 68 17 chr9 100736312 100736429 -17126198 + L2 LINE L2 3125 3247 -25 380 282 40 79 chr9 100736654 100736856 -17125771 + MIR3 SINE MIR 10 203 -5 3519 138 14 19 chr9 100737129 100737693 -17124934 - L1MB3 LINE L1 -2 6181 5621 509 106 43 64 chr9 100737706 100737800 -17124827 - L1MB3 LINE L1 -635 5536 5445 320 300 72 0 chr9 100737950 100738086 -17124541 + MIR SINE MIR 32 175 -64 2210 107 0 13 chr9 100738309 100738609 -17124018 - AluSq SINE Alu -16 297 2 323 264 11 11 chr9 100738638 100738725 -17123902 - MIR SINE MIR -128 134 48 2140 105 56 0 chr9 100738750 100739035 -17123592 - AluSg SINE Alu -9 301 1 2014 132 3 3 chr9 100739716 100740003 -17122624 - AluSx SINE Alu -25 287 1 201 108 0 0 chr9 100740139 100740176 -17122451 + (CAGT)n Simple_repeat Simple_repeat 3 39 0 823 294 86 33 chr9 100740197 100740653 -17121974 - L2 LINE L2 -547 2767 2288 475 331 66 11 chr9 100740754 100741041 -17121586 - L2 LINE L2 -1022 2292 1990 219 347 204 6 chr9 100741037 100741204 -17121423 + MIR SINE MIR 34 233 -29 * 23 0 0 0 chr9 100741297 100741320 -17121307 + AT_rich Low_complexity Low_complexity 1 23 0 1403 198 0 0 chr9 100741320 100741568 -17121059 - AluJb SINE Alu -35 277 30 395 279 149 7 chr9 100742609 100742763 -17119864 + MIR SINE MIR 57 232 -30 2372 93 3 0 chr9 100742807 100743108 -17119519 - AluSx SINE Alu -9 303 2 348 341 31 23 chr9 100743361 100743490 -17119137 + L2 LINE L2 3141 3270 -2 224 207 35 17 chr9 100743581 100743639 -17118988 + GA-rich Low_complexity Low_complexity 2 60 0 599 311 117 81 chr9 100743993 100744083 -17118544 - L2 LINE L2 -1 3271 3186 2384 88 10 0 chr9 100744083 100744389 -17118238 - AluSx SINE Alu -3 309 1 2328 95 0 3 chr9 100744389 100744693 -17117934 - AluY SINE Alu -8 303 1 599 311 117 81 chr9 100744693 100745299 -17117328 - L2 LINE L2 -85 3187 2550 626 249 106 34 chr9 100745393 100745768 -17116859 + L1MB7 LINE L1 5513 5885 -299 318 360 59 8 chr9 100745869 100746014 -17116613 - L1MC/D LINE L1 -1972 5836 5671 2886 143 42 6 chr9 100746014 100746489 -17116138 + LTR42 LTR ERVL 1 492 -3 318 360 59 8 chr9 100746489 100746596 -17116031 - L1MC/D LINE L1 -2137 5671 5571 1715 119 3 61 chr9 100747719 100748014 -17114613 + AluJb SINE Alu 1 278 -34 1815 160 14 58 chr9 100800306 100800447 -17062180 + MLT2C1 LTR ERVL 1 147 -250 1629 116 17 9 chr9 100800447 100800679 -17061948 + AluSg/x SINE Alu 79 312 0 1815 160 14 58 chr9 100800679 100800756 -17061871 + MLT2C1 LTR ERVL 147 226 -171 2412 91 3 0 chr9 100800756 100801054 -17061573 + AluSx SINE Alu 1 299 -13 1815 160 14 58 chr9 100801054 100801197 -17061430 + MLT2C1 LTR ERVL 226 347 -50 465 34 0 0 chr9 100801201 100801260 -17061367 + (CA)n Simple_repeat Simple_repeat 2 60 0 514 182 0 0 chr9 100801260 100801348 -17061279 + Tigger5 DNA MER2_type 3 90 -2233 400 128 279 0 chr9 100801346 100801432 -17061195 + Tigger5 DNA MER2_type 2214 2323 0 * 2109 89 0 11 chr9 100801589 100801859 -17060768 - AluSx SINE Alu -45 267 1 365 291 39 16 chr9 100802205 100802332 -17060295 - LTR67 LTR ERVL 0 557 428 2355 107 0 0 chr9 100802729 100803027 -17059600 + AluSg SINE Alu 1 298 -12 1924 165 0 25 chr9 100803040 100803459 -17059168 + AluJb SINE Alu 3 413 0 268 309 16 49 chr9 100803616 100803739 -17058888 + L2 LINE L2 3154 3272 0 198 0 0 0 chr9 100803857 100803879 -17058748 + (T)n Simple_repeat Simple_repeat 1 22 0 217 191 103 0 chr9 100804309 100804377 -17058250 + L2 LINE L2 2990 3064 -208 290 294 29 22 chr9 100804402 100804538 -17058089 + L2 LINE L2 2724 2860 -454 362 183 0 12 chr9 100804811 100804893 -17057734 + CT-rich Low_complexity Low_complexity 2 82 0 572 195 35 65 chr9 100804972 100805141 -17057486 - MER5B DNA MER1_type -12 166 3 531 219 56 45 chr9 100805604 100805782 -17056845 - Charlie8 DNA MER1_type -2213 204 25 192 167 0 0 chr9 100806454 100806490 -17056137 + L2 LINE L2 3219 3254 -18 677 255 95 12 chr9 100806492 100806725 -17055902 + MIR SINE MIR 3 262 0 551 264 39 0 chr9 100807473 100807655 -17054972 + MER5A DNA MER1_type 1 189 0 33 66 0 0 chr9 100808286 100808347 -17054280 + GC_rich Low_complexity Low_complexity 1 61 0 186 271 57 0 chr9 100808389 100808459 -17054168 + L2 LINE L2 3196 3269 -3 391 250 16 19 chr9 100808624 100808771 -17053856 - MIR3 SINE MIR -88 120 14 650 167 16 0 chr9 100808890 100809016 -17053611 + AluJo/FLAM SINE Alu 3 130 -172 230 163 0 0 chr9 100809019 100809068 -17053559 + Alu SINE Alu 254 302 0 2024 127 28 0 chr9 100809252 100809536 -17053091 - AluSx SINE Alu -20 292 1 327 145 0 29 chr9 100809537 100809606 -17053021 + L1MB8 LINE L1 6112 6178 0 676 255 10 21 chr9 100809608 100809800 -17052827 + MIR SINE MIR 60 249 -13 284 272 33 0 chr9 100809803 100809895 -17052732 - MIR SINE MIR 0 262 168 2802 26 0 6 chr9 100810023 100810336 -17052291 - AluY SINE Alu 0 311 1 250 302 151 8 chr9 100810593 100810719 -17051908 + MIR SINE MIR 38 181 -81 1037 179 58 40 chr9 100811099 100811280 -17051347 - MER33 DNA MER1_type -2262 323 134 2240 114 3 3 chr9 100811280 100811587 -17051040 + AluSx SINE Alu 1 307 -5 1037 179 58 40 chr9 100811587 100811679 -17050948 - MER33 DNA MER1_type -2451 134 45 2237 116 0 0 chr9 100811707 100812000 -17050627 - AluSx SINE Alu -19 293 1 497 314 41 33 chr9 100812250 100812492 -17050135 + MIR SINE MIR 18 261 -1 2306 107 0 0 chr9 100812500 100812800 -17049827 + AluSx SINE Alu 1 300 -12 2463 79 10 3 chr9 100812800 100813103 -17049524 + AluY SINE Alu 1 305 -6 2289 112 0 0 chr9 100813574 100813870 -17048757 - AluSx SINE Alu -16 296 1 582 264 37 34 chr9 100813919 100814146 -17048481 + L1ME4a LINE L1 5847 6077 -44 1963 168 7 0 chr9 100814146 100814449 -17048178 - AluJo SINE Alu -7 305 1 582 264 37 34 chr9 100814449 100814490 -17048137 + L1ME4a LINE L1 6077 6116 -5 2332 106 0 7 chr9 100814775 100815078 -17047549 - AluSx SINE Alu -11 301 1 290 249 133 0 chr9 100815083 100815192 -17047435 + MIR SINE MIR 45 146 -62 264 270 230 0 chr9 100815752 100815852 -17046775 + MER5B DNA MER1_type 20 142 -36 275 375 130 0 chr9 100816231 100816500 -17046127 + L2 LINE L2 2966 3269 -3 249 241 0 0 chr9 100818002 100818060 -17044567 - MIR3 SINE MIR -6 202 145 270 260 230 0 chr9 100819466 100819566 -17043061 + MER5B DNA MER1_type 20 142 -36 2273 125 3 0 chr9 100819757 100820061 -17042566 - AluSq SINE Alu -7 306 2 5309 113 14 34 chr9 100820067 100820443 -17042184 - L1MC1 LINE L1 -1 6332 5950 1971 142 26 3 chr9 100820443 100820745 -17041882 - AluSx SINE Alu -3 309 1 5309 113 14 34 chr9 100820745 100821279 -17041348 - L1MC1 LINE L1 -383 5950 5440 226 127 0 36 chr9 100821402 100821457 -17041170 + (TTCC)n Simple_repeat Simple_repeat 4 56 0 1069 206 0 0 chr9 100821464 100821644 -17040983 - AluJ SINE Alu 0 312 133 239 0 32 0 chr9 100821649 100821680 -17040947 + (TTA)n Simple_repeat Simple_repeat 2 33 0 2364 94 0 0 chr9 100822146 100822443 -17040184 - AluSx SINE Alu -15 297 1 887 154 8 0 chr9 100822449 100822579 -17040048 - AluJ SINE Alu -181 131 1 395 305 71 7 chr9 100822641 100822782 -17039845 - MIR3 SINE MIR -24 184 35 188 301 86 0 chr9 100823000 100823093 -17039534 - MIR SINE MIR -121 141 41 657 237 0 0 chr9 100823169 100823304 -17039323 - MER5A DNA MER1_type -54 135 1 281 327 43 25 chr9 100823304 100823455 -17039172 - MIR3 SINE MIR -53 155 2 1640 186 25 4 chr9 100823995 100824274 -17038353 - AluJo SINE Alu -21 291 7 223 353 0 24 chr9 100824329 100824414 -17038213 - L2 LINE L2 -2 3270 3188 256 349 96 40 chr9 100825248 100825520 -17037107 + L2 LINE L2 2985 3271 -1 274 237 113 41 chr9 100825695 100825792 -17036835 - MIR3 SINE MIR -28 180 77 948 282 85 50 chr9 100825876 100825958 -17036669 + L3 LINE CR1 931 1009 -568 2475 84 3 7 chr9 100825958 100826268 -17036359 + AluSg SINE Alu 1 309 -1 948 282 85 50 chr9 100826268 100826703 -17035924 + L3 LINE CR1 1009 1466 -111 264 333 0 0 chr9 100828203 100828281 -17034346 + L2 LINE L2 3236 3313 0 367 267 0 0 chr9 100828563 100828653 -17033974 - MIR SINE MIR -110 152 63 473 131 62 54 chr9 100828709 100828735 -17033892 + L1ME1 LINE L1 5215 5239 -907 1782 147 115 3 chr9 100828735 100829048 -17033579 - MER7A DNA MER2_type 0 346 1 473 131 62 54 chr9 100829048 100829133 -17033494 + L1ME1 LINE L1 5239 5330 -816 1633 157 7 27 chr9 100829133 100829433 -17033194 + AluJo SINE Alu 1 294 -18 473 131 62 54 chr9 100829433 100829450 -17033177 + L1ME1 LINE L1 5330 5345 -801 2171 216 85 10 chr9 100829517 100830035 -17032592 + L1ME1 LINE L1 5602 6158 -8 986 210 15 24 chr9 100830873 100831078 -17031549 + MIR SINE MIR 9 211 -51 1732 167 175 0 chr9 100831079 100831444 -17031183 - MLT1D LTR MaLR -1 504 76 1887 163 94 3 chr9 100831444 100831794 -17030833 + MLT1B LTR MaLR 1 382 -8 490 165 13 0 chr9 100831802 100831881 -17030746 - MLT1D LTR MaLR -425 80 1 198 194 0 0 chr9 100831983 100832045 -17030582 + (CTA)n Simple_repeat Simple_repeat 1 62 0 240 298 29 39 chr9 100833235 100833339 -17029288 + L2 LINE L2 2964 3066 -206 341 245 94 57 chr9 100833457 100833616 -17029011 + MIR SINE MIR 8 146 -62 188 333 37 0 chr9 100833677 100833731 -17028896 + L3 LINE CR1 1077 1132 -445 304 319 9 53 chr9 100833835 100833948 -17028679 + L3 LINE CR1 1345 1452 -125 223 338 143 0 chr9 100835520 100835653 -17026974 - MIR3 SINE MIR -27 181 30 303 202 107 24 chr9 100836312 100836396 -17026231 - MER58B DNA MER1_type -1 340 250 1769 153 0 4 chr9 100836424 100836705 -17025922 - AluJb SINE Alu -15 297 18 182 323 141 0 chr9 100836817 100836916 -17025711 - MIR SINE MIR -81 181 69 538 153 144 9 chr9 100836954 100837065 -17025562 - MER58B DNA MER1_type -215 126 1 237 241 0 52 chr9 100837099 100837157 -17025470 + MIR SINE MIR 86 140 -68 943 227 82 25 chr9 100837486 100837803 -17024824 + MER46C DNA MER2_type 4 338 0 205 246 18 35 chr9 100837862 100837919 -17024708 - MIR3 SINE MIR -1 207 152 2208 107 0 16 chr9 100837981 100838298 -17024329 - AluSx SINE Alu 0 312 1 256 219 85 0 chr9 100838360 100838442 -17024185 - MIR SINE MIR -66 142 54 341 244 23 12 chr9 100838797 100838883 -17023744 + MIR SINE MIR 97 183 -79 190 316 132 29 chr9 100839130 100839266 -17023361 - MIR SINE MIR -44 218 69 225 204 20 0 chr9 100839387 100839436 -17023191 - MIR SINE MIR -74 134 85 236 315 117 18 chr9 100840218 100840329 -17022298 + MIR3 SINE MIR 82 203 -5 217 351 21 0 chr9 100840684 100840778 -17021849 - MIR SINE MIR -147 115 20 748 269 21 11 chr9 100840886 100841072 -17021555 + MIR SINE MIR 10 197 -65 758 216 68 34 chr9 100841641 100841817 -17020810 - MIR SINE MIR -39 223 42 22 0 0 0 chr9 100842501 100842523 -17020104 + GC_rich Low_complexity Low_complexity 1 22 0 2023 108 0 10 chr9 100843537 100843834 -17018793 - AluSq SINE Alu -19 294 1 181 292 15 31 chr9 100844118 100844183 -17018444 + L3 LINE CR1 1495 1558 -19 2350 60 0 0 chr9 100844235 100844560 -17018067 + AluY SINE Alu 1 311 0 262 180 40 0 chr9 100846038 100846088 -17016539 - L3 LINE CR1 -443 1134 1083 353 277 59 0 chr9 100846647 100846748 -17015879 + L2 LINE L2 3205 3311 -2 284 243 40 14 chr9 100848093 100848167 -17014460 - MIR3 SINE MIR -46 162 87 1494 157 43 36 chr9 100848523 100848803 -17013824 - AluJb SINE Alu -17 295 14 308 234 190 51 chr9 100849297 100849434 -17013193 - Charlie8 DNA MER1_type -2261 156 1 345 301 57 24 chr9 100849758 100849881 -17012746 + L2 LINE L2 3179 3305 -8 184 216 0 0 chr9 100850598 100850635 -17011992 - MIR SINE MIR -120 142 106 475 270 152 6 chr9 100850655 100850833 -17011794 - MIR SINE MIR -10 252 49 270 379 57 0 chr9 100851453 100851577 -17011050 + L2 LINE L2 2920 3050 -222 366 23 0 0 chr9 100851705 100851748 -17010879 + (TG)n Simple_repeat Simple_repeat 1 43 0 2085 126 0 0 chr9 100852133 100852426 -17010201 + AluSx SINE Alu 1 293 -19 580 147 0 55 chr9 100852613 100852722 -17009905 + L1MB2 LINE L1 6069 6171 0 312 288 122 22 chr9 100853402 100853541 -17009086 - L2 LINE L2 -18 3254 3102 249 254 14 0 chr9 100853921 100853992 -17008635 - L1ME LINE L1 -256 5865 5794 975 263 163 58 chr9 100854133 100854244 -17008383 + L2 LINE L2 2269 2367 -946 1831 182 24 90 chr9 100854244 100854744 -17007883 - MLT1C LTR MaLR 0 467 1 975 263 163 58 chr9 100854744 100855386 -17007241 + L2 LINE L2 2367 3150 -163 1975 141 3 0 chr9 100855386 100855684 -17006943 + AluSx SINE Alu 1 299 -13 975 263 163 58 chr9 100855684 100855865 -17006762 + L2 LINE L2 3150 3311 -2 276 308 22 11 chr9 100855935 100856026 -17006601 - L1ME LINE L1 -482 5639 5548 210 229 0 21 chr9 100856084 100856132 -17006495 + G-rich Low_complexity Low_complexity 2 48 0 1961 119 71 9 chr9 100856759 100857096 -17005531 - MER46B DNA MER2_type -3 233 1 664 209 104 43 chr9 100857224 100857259 -17005368 - MER5A DNA MER1_type -6 183 152 2410 63 0 0 chr9 100857259 100857560 -17005067 - AluY SINE Alu -10 301 1 664 209 104 43 chr9 100857560 100857687 -17004940 - MER5A DNA MER1_type -37 152 11 214 284 64 55 chr9 100857923 100858032 -17004595 - MIR SINE MIR -70 192 83 288 295 86 0 chr9 100858090 100858195 -17004432 - MIR SINE MIR -82 180 67 252 0 0 0 chr9 100858664 100858692 -17003935 + (CA)n Simple_repeat Simple_repeat 2 29 0 421 309 96 17 chr9 100858839 100859017 -17003610 + MIR3 SINE MIR 11 202 -6 422 220 0 76 chr9 100859106 100859224 -17003403 - MIR SINE MIR -32 230 122 421 338 95 0 chr9 100859323 100859471 -17003156 - L3 LINE CR1 -85 1492 1331 411 347 53 15 chr9 100859475 100859664 -17002963 + MIR3 SINE MIR 13 208 0 1306 202 73 16 chr9 100859841 100860340 -17002287 + MER90 LTR ERV1 56 614 0 5239 219 128 46 chr9 100860374 100860703 -17001924 + L2 LINE L2 1169 1470 -1843 728 150 174 92 chr9 100860703 100860910 -17001717 + MER58A DNA MER1_type 1 224 0 5239 219 128 46 chr9 100860910 100861858 -17000769 + L2 LINE L2 1470 2339 -974 2436 147 36 10 chr9 100861858 100862273 -17000354 - MSTB LTR MaLR 0 426 1 5239 219 128 46 chr9 100862273 100862970 -16999657 + L2 LINE L2 2339 3306 -7 520 219 48 0 chr9 100863108 100863254 -16999373 + MER113 DNA MER1_type? 1 153 -368 2155 112 6 3 chr9 100863521 100863833 -16998794 + AluSp SINE Alu 1 313 0 455 256 131 56 chr9 100863899 100864059 -16998568 - MIR3 SINE MIR -2 206 35 431 299 19 0 chr9 100864074 100864181 -16998446 - L2 LINE L2 -10 3262 3154 318 281 68 98 chr9 100864945 100865045 -16997582 + MIR SINE MIR 15 107 -155 2115 123 3 0 chr9 100865045 100865355 -16997272 - AluSx SINE Alu -1 311 1 318 281 68 98 chr9 100865355 100865458 -16997169 + MIR SINE MIR 107 212 -50 2286 70 0 3 chr9 100866508 100866807 -16995820 - AluY SINE Alu -13 298 1 862 243 67 25 chr9 100867581 100867820 -16994807 + MIR SINE MIR 14 262 0 225 385 74 31 chr9 100868008 100868265 -16994362 + L2 LINE L2 2947 3214 -58 25 31 0 0 chr9 100868776 100868808 -16993819 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr9 100869272 100869300 -16993327 + AT_rich Low_complexity Low_complexity 1 28 0 624 112 0 0 chr9 100869383 100869472 -16993155 + FLAM_A SINE Alu 40 128 -14 1803 161 7 0 chr9 100869597 100869888 -16992739 + AluSx SINE Alu 1 293 -19 2238 188 34 11 chr9 100869891 100870338 -16992289 + L1 LINE L1 4377 4837 -1309 1899 125 37 10 chr9 100870338 100870628 -16991999 + L1PA15 LINE L1 5861 6165 0 2238 188 34 11 chr9 100870628 100870648 -16991979 + L1 LINE L1 4837 4855 -1291 403 295 48 0 chr9 100870723 100870828 -16991799 + L2 LINE L2 3182 3291 -22 186 103 0 0 chr9 100870833 100870862 -16991765 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 445 266 31 22 chr9 100872273 100872390 -16990237 + MIR SINE MIR 43 164 -85 1805 121 46 7 chr9 100872390 100872671 -16989956 - AluJb SINE Alu -20 292 1 445 266 31 22 chr9 100872671 100872690 -16989937 + MIR SINE MIR 164 181 -68 24 0 0 0 chr9 100872781 100872805 -16989822 + AT_rich Low_complexity Low_complexity 1 24 0 1947 116 0 11 chr9 100872816 100873144 -16989483 - AluSx SINE Alu 0 325 1 21 57 0 0 chr9 100873391 100873426 -16989201 + AT_rich Low_complexity Low_complexity 1 35 0 1569 99 40 5 chr9 100874141 100874363 -16988264 - MER30 DNA MER1_type 0 230 1 253 281 141 0 chr9 100875228 100875292 -16987335 - MIR3 SINE MIR -33 175 103 635 329 105 3 chr9 100875423 100875718 -16986909 + L3 LINE CR1 1165 1489 -88 303 325 13 0 chr9 100875717 100875794 -16986833 - L2 LINE L2 -2 3311 3234 * 243 256 222 0 chr9 100875981 100876071 -16986556 - MIR3 SINE MIR -12 196 87 2004 122 14 10 chr9 100876805 100877101 -16985526 + AluSp SINE Alu 1 297 -16 333 292 97 14 chr9 100877545 100877689 -16984938 - MIR3 SINE MIR -34 174 19 287 157 41 149 chr9 100877755 100877779 -16984848 + L1ME4a LINE L1 5968 5993 -128 1863 115 56 11 chr9 100877779 100878048 -16984579 + AluSx SINE Alu 1 281 -31 195 42 0 0 chr9 100878052 100878076 -16984551 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 287 157 41 149 chr9 100878076 100878167 -16984460 + L1ME4a LINE L1 5996 6075 -46 189 0 0 0 chr9 100878270 100878291 -16984336 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 323 254 182 18 chr9 100878295 100878405 -16984222 + MIR3 SINE MIR 15 142 -66 245 313 52 74 chr9 100878447 100878677 -16983950 - L2 LINE L2 -853 2461 2237 1933 136 14 0 chr9 100878825 100879148 -16983479 + AluSx SINE Alu 1 327 0 262 318 87 8 chr9 100879933 100880059 -16982568 - MIR3 SINE MIR -7 201 66 279 268 148 35 chr9 100880082 100880224 -16982403 - L3 LINE CR1 -189 1388 1231 2320 107 0 0 chr9 100880561 100880861 -16981766 + AluSx SINE Alu 1 300 -12 554 294 31 6 chr9 100880878 100881038 -16981589 + MIR3 SINE MIR 30 193 -15 190 293 49 61 chr9 100881169 100881251 -16981376 + MIR3 SINE MIR 11 91 -117 2043 148 3 3 chr9 100881293 100881604 -16981023 - AluJo SINE Alu 0 312 2 2174 163 104 36 chr9 100881643 100882116 -16980511 + MLT1D LTR MaLR 1 505 0 267 114 23 0 chr9 100882162 100882206 -16980421 + MER5B DNA MER1_type 1 45 -133 * 269 264 0 42 chr9 100882200 100882272 -16980355 - MER5B DNA MER1_type -105 73 5 2454 101 0 0 chr9 100884473 100884781 -16977846 + AluSx SINE Alu 1 308 -4 256 208 13 13 chr9 100884874 100884951 -16977676 + (CATATA)n Simple_repeat Simple_repeat 6 82 0 21 57 0 0 chr9 100884954 100884989 -16977638 + AT_rich Low_complexity Low_complexity 1 35 0 2096 105 3 3 chr9 100885026 100885320 -16977307 - AluSc SINE Alu -15 294 1 188 111 28 0 chr9 100886645 100886681 -16975946 + (TTTAA)n Simple_repeat Simple_repeat 4 40 0 310 196 11 54 chr9 100887102 100887194 -16975433 - Charlie8 DNA MER1_type -2246 171 84 2122 97 24 3 chr9 100887281 100887569 -16975058 + AluSq SINE Alu 2 295 -18 386 339 97 57 chr9 100887914 100888265 -16974362 + L2 LINE L2 2893 3257 -15 249 312 166 15 chr9 100888875 100889030 -16973597 + L2 LINE L2 3078 3273 -40 1611 204 63 26 chr9 100889030 100889412 -16973215 + MSTD LTR MaLR 1 396 0 249 312 166 15 chr9 100889412 100889461 -16973166 + L2 LINE L2 3273 3313 0 253 224 17 17 chr9 100889467 100889525 -16973102 + MIR3 SINE MIR 103 160 -48 466 276 138 13 chr9 100890016 100890168 -16972459 + MIR3 SINE MIR 21 191 -17 2414 107 6 6 chr9 100890674 100891030 -16971597 + MER46B DNA MER2_type 5 235 -1 1455 163 144 0 chr9 100891039 100891303 -16971324 - AluJo SINE Alu 0 302 1 337 353 27 7 chr9 100891349 100891496 -16971131 + MIR3 SINE MIR 3 151 -75 198 0 0 0 chr9 100891578 100891600 -16971027 + (TTA)n Simple_repeat Simple_repeat 1 22 0 194 222 0 0 chr9 100892030 100892075 -16970552 + MIR3 SINE MIR 161 205 -3 1477 224 52 61 chr9 100892358 100892455 -16970172 + L2 LINE L2 2690 2786 -527 438 351 54 0 chr9 100892455 100892640 -16969987 - MER91A DNA MER1_type -1 195 1 1477 224 52 61 chr9 100892640 100893182 -16969445 + L2 LINE L2 2786 3313 0 1612 177 35 3 chr9 100893189 100893477 -16969150 + AluJo SINE Alu 1 297 -15 207 69 0 0 chr9 100893484 100893513 -16969114 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 2454 39 3 23 chr9 100894169 100894479 -16968148 - AluY SINE Alu -7 304 1 22 0 0 0 chr9 100894550 100894572 -16968055 + AT_rich Low_complexity Low_complexity 1 22 0 484 297 14 7 chr9 100895142 100895290 -16967337 + MIR3 SINE MIR 53 201 -7 2256 107 0 0 chr9 100895595 100895893 -16966734 - AluSg SINE Alu -12 298 1 308 351 33 20 chr9 100896747 100896898 -16965729 - L3 LINE CR1 -5 1572 1420 1123 167 61 5 chr9 100897198 100897396 -16965231 + AluJo SINE Alu 87 295 -17 404 231 53 96 chr9 100897554 100897762 -16964865 - L1MC4a LINE L1 -1887 5921 5723 23 54 0 0 chr9 100897772 100897809 -16964818 + AT_rich Low_complexity Low_complexity 1 37 0 2430 95 0 0 chr9 100898298 100898603 -16964024 - AluSx SINE Alu -5 307 3 623 280 42 36 chr9 100898960 100899306 -16963321 + L1ME3A LINE L1 5566 5836 -334 671 253 63 45 chr9 100899363 100899792 -16962835 + LTR35 LTR ERV1 138 556 0 23 33 0 0 chr9 100899808 100899838 -16962789 + AT_rich Low_complexity Low_complexity 1 30 0 805 173 0 0 chr9 100900357 100900490 -16962137 - FLAM_C SINE Alu 0 133 1 340 338 103 46 chr9 100900539 100900927 -16961700 - L2 LINE L2 -786 2528 2119 2371 76 17 0 chr9 100900946 100901248 -16961379 + AluSc SINE Alu 1 307 -2 2234 92 0 3 chr9 100901368 100901674 -16960953 - AluSc SINE Alu 0 305 1 2211 238 115 1 chr9 100901762 100902566 -16960061 - L2 LINE L2 -5 3308 2411 292 293 207 0 chr9 100903735 100903851 -16958776 + MIR3 SINE MIR 68 207 -1 1368 212 32 66 chr9 100903990 100904368 -16958259 + MLT1A1 LTR MaLR 1 365 0 669 267 43 43 chr9 100905399 100905631 -16956996 - MIR SINE MIR -17 245 14 273 308 112 0 chr9 100905649 100905756 -16956871 + L2 LINE L2 3178 3296 -17 488 241 133 0 chr9 100905937 100906103 -16956524 + MIR SINE MIR 73 260 -2 695 305 98 3 chr9 100906567 100906892 -16955735 + L1ME LINE L1 5313 5668 -496 2515 31 0 0 chr9 100907019 100907305 -16955322 - AluY SINE Alu -25 286 1 2047 129 0 26 chr9 100907884 100908193 -16954434 + AluSx SINE Alu 1 301 -11 27 0 0 0 chr9 100909208 100909235 -16953392 + AT_rich Low_complexity Low_complexity 1 27 0 2309 107 7 0 chr9 100909404 100909702 -16952925 - AluSx SINE Alu -12 300 1 922 222 46 9 chr9 100910096 100910312 -16952315 - MIR SINE MIR -30 232 9 48 18 0 0 chr9 100910495 100910550 -16952077 + AT_rich Low_complexity Low_complexity 1 55 0 311 313 56 28 chr9 100910627 100910771 -16951856 + L2 LINE L2 3165 3312 -1 357 216 103 9 chr9 100910815 100910931 -16951696 + L1ME4a LINE L1 5978 6104 -17 391 214 14 25 chr9 100910935 100911062 -16951565 - L1MC3 LINE L1 -11 8026 7687 2265 90 0 0 chr9 100911392 100911670 -16950957 - AluSx SINE Alu -18 294 17 421 269 37 22 chr9 100912201 100912335 -16950292 + MIR SINE MIR 27 162 -100 367 268 27 9 chr9 100912642 100912754 -16949873 + L1M3 LINE L1 3904 4017 -2129 1135 242 153 27 chr9 100912873 100913390 -16949237 + L1ME LINE L1 140 721 -5349 295 200 0 95 chr9 100913395 100913490 -16949137 - Cheshire DNA MER1_type -1988 432 347 1245 108 0 0 chr9 100913490 100913656 -16948971 + AluSg/x SINE Alu 129 294 -16 276 262 16 0 chr9 100913691 100913752 -16948875 - Cheshire DNA MER1_type -2358 62 1 951 305 130 36 chr9 100913785 100914271 -16948356 + L1M3 LINE L1 4530 5102 -1044 1775 112 4 0 chr9 100914271 100914521 -16948106 - L1PA15 LINE L1 -16 6149 5899 951 305 130 36 chr9 100914521 100914726 -16947901 + L1M3 LINE L1 5102 5286 -860 679 194 116 0 chr9 100914728 100914883 -16947744 - MIR SINE MIR 0 262 90 360 239 26 0 chr9 100914953 100915066 -16947561 + L1M3 LINE L1 5353 5468 -700 407 321 11 27 chr9 100915104 100915291 -16947336 - L1ME3A LINE L1 -222 5948 5765 746 281 38 43 chr9 100915307 100915705 -16946922 + L1MC4a LINE L1 5506 5901 -1907 1083 134 0 0 chr9 100915708 100915926 -16946701 + (TA)n Simple_repeat Simple_repeat 1 218 0 2283 117 0 0 chr9 100916594 100916894 -16945733 + AluSg SINE Alu 1 300 -10 763 199 203 4 chr9 100917074 100917320 -16945307 + Charlie2a DNA MER1_type 1474 1768 -1094 1242 205 116 52 chr9 100917321 100917460 -16945167 + Charlie2a DNA MER1_type 2114 2243 -619 2304 65 0 3 chr9 100917460 100917752 -16944875 - AluY SINE Alu -20 291 1 1242 205 116 52 chr9 100917752 100918077 -16944550 + Charlie2a DNA MER1_type 2243 2633 -229 2017 142 3 0 chr9 100918077 100918366 -16944261 + AluSx SINE Alu 3 292 -20 1242 205 116 52 chr9 100918366 100918548 -16944079 + Charlie2a DNA MER1_type 2633 2802 -60 686 350 107 34 chr9 100918642 100919204 -16943423 - L2 LINE L2 -1993 1321 719 831 159 7 28 chr9 100920145 100920290 -16942337 + FLAM_C SINE Alu 1 142 -1 21 36 0 0 chr9 100920356 100920384 -16942243 + AT_rich Low_complexity Low_complexity 1 28 0 389 292 50 8 chr9 100920967 100921087 -16941540 - L2 LINE L2 -22 3291 3167 210 333 163 14 chr9 100921148 100921289 -16941338 - L2 LINE L2 -5 3308 3147 28 0 0 0 chr9 100921813 100921841 -16940786 + AT_rich Low_complexity Low_complexity 1 28 0 2175 107 0 0 chr9 100922231 100922511 -16940116 + AluSx SINE Alu 1 280 -32 270 0 0 0 chr9 100922511 100922541 -16940086 + (CAAA)n Simple_repeat Simple_repeat 4 33 0 671 272 64 4 chr9 100922840 100923105 -16939522 + L1MEc LINE L1 109 389 -6007 2854 174 21 11 chr9 100923165 100923700 -16938927 + L1MA2 LINE L1 13 552 -7013 * 6791 125 22 4 chr9 100923675 100925840 -16936787 + L1MA2 LINE L1 5520 7723 0 1205 99 0 0 chr9 100925947 100926119 -16936508 + AluSq SINE Alu 133 304 0 1955 170 9 0 chr9 100926231 100926560 -16936067 - MER7A DNA MER2_type -10 336 7 2305 101 3 0 chr9 100926621 100926919 -16935708 + AluSx SINE Alu 1 299 -13 211 333 176 30 chr9 100927114 100927279 -16935348 - MIR3 SINE MIR -2 206 18 607 336 65 69 chr9 100927690 100928166 -16934461 - L3 LINE CR1 -3 1574 1101 26 0 0 0 chr9 100928326 100928352 -16934275 + AT_rich Low_complexity Low_complexity 1 26 0 191 374 114 0 chr9 100929605 100929728 -16932899 - L2 LINE L2 -464 2850 2714 2233 124 0 0 chr9 100931554 100931861 -16930766 + AluSx SINE Alu 1 307 -5 2041 119 0 0 chr9 100931875 100932152 -16930475 + AluSx SINE Alu 1 277 -35 1066 98 0 13 chr9 100932158 100932384 -16930243 + (GGAA)n Simple_repeat Simple_repeat 1 222 0 576 221 142 44 chr9 100932397 100932601 -16930026 - MIR SINE MIR -10 252 29 468 278 21 7 chr9 100933275 100933419 -16929208 + MIR SINE MIR 35 180 -82 387 286 77 73 chr9 100934289 100934537 -16928090 + MIR SINE MIR 2 250 -12 1027 161 0 12 chr9 100935401 100935569 -16927058 - FAM SINE Alu -8 167 2 255 172 38 83 chr9 100935919 100936076 -16926551 + (TTATA)n Simple_repeat Simple_repeat 5 154 0 29 28 0 0 chr9 100936288 100936324 -16926303 + AT_rich Low_complexity Low_complexity 1 36 0 236 290 15 30 chr9 100936380 100936511 -16926116 + GA-rich Low_complexity Low_complexity 2 130 0 224 296 31 19 chr9 100936434 100936596 -16926031 + (CAGAGA)n Simple_repeat Simple_repeat 2 165 0 * 208 167 0 24 chr9 100937191 100937233 -16925394 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 1334 126 0 56 chr9 100937582 100937797 -16924830 + AluSg/x SINE Alu 74 276 -36 733 128 18 24 chr9 100937797 100937961 -16924666 + G-rich Low_complexity Low_complexity 4 166 0 270 0 0 0 chr9 100939003 100939033 -16923594 + (CA)n Simple_repeat Simple_repeat 2 31 0 23 0 0 0 chr9 100939593 100939616 -16923011 + AT_rich Low_complexity Low_complexity 1 23 0 230 310 56 0 chr9 100939659 100939730 -16922897 + L2 LINE L2 3158 3232 -40 1070 146 116 20 chr9 100940067 100940266 -16922361 - MER20 DNA MER1_type -1 218 1 379 317 92 54 chr9 100940311 100940633 -16921994 - L2 LINE L2 -195 3077 2733 242 215 46 31 chr9 100940631 100940696 -16921931 + MIR3 SINE MIR 123 188 -20 * 7319 43 5 0 chr9 100940973 100942436 -16920191 + L1PA6 LINE L1 4687 6154 0 903 252 85 3 chr9 100942885 100943111 -16919516 + MIR SINE MIR 3 232 -30 1031 214 193 48 chr9 100943169 100943646 -16918981 + MLT1H LTR MaLR 1 546 -3 200 94 31 0 chr9 100943939 100943971 -16918656 + A-rich Low_complexity Low_complexity 2 34 0 216 135 0 0 chr9 100944193 100944230 -16918397 + (CAT)n Simple_repeat Simple_repeat 2 38 0 405 234 54 9 chr9 100944445 100944556 -16918071 - L2 LINE L2 -665 2649 2534 22 88 0 0 chr9 100944854 100944911 -16917716 + AT_rich Low_complexity Low_complexity 1 57 0 255 360 18 27 chr9 100944938 100945049 -16917578 + MIR SINE MIR 30 139 -69 2399 91 0 0 chr9 100945367 100945675 -16916952 + AluSg1 SINE Alu 1 308 -1 2083 138 0 3 chr9 100946301 100946591 -16916036 + AluJb SINE Alu 1 289 -23 309 109 0 0 chr9 100946597 100946643 -16915984 + (TG)n Simple_repeat Simple_repeat 2 47 0 183 205 0 0 chr9 100946643 100946682 -16915945 + (CATATA)n Simple_repeat Simple_repeat 2 40 0 609 338 145 16 chr9 100946755 100947190 -16915437 - L2 LINE L2 -2 3311 2821 446 146 12 0 chr9 100947434 100947516 -16915111 + CT-rich Low_complexity Low_complexity 2 84 0 2026 119 4 0 chr9 100947526 100947803 -16914824 - AluSq SINE Alu -35 278 1 225 0 0 0 chr9 100948778 100948803 -16913824 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 1155 121 8 100 chr9 100949128 100949164 -16913463 + AluJo SINE Alu 93 131 -181 1755 147 0 45 chr9 100949164 100949456 -16913171 - AluJo SINE Alu -24 288 10 1155 121 8 100 chr9 100949456 100949658 -16912969 + AluJo SINE Alu 131 309 -3 2237 94 10 10 chr9 100950886 100951194 -16911433 - AluY SINE Alu -3 308 1 23 33 0 0 chr9 100951429 100951459 -16911168 + AT_rich Low_complexity Low_complexity 1 30 0 845 255 85 8 chr9 100952572 100952807 -16909820 + MIR SINE MIR 10 262 0 1964 141 7 0 chr9 100952940 100953239 -16909388 + AluSx SINE Alu 1 301 -11 562 282 73 86 chr9 100953246 100953273 -16909354 - L2 LINE L2 -1 3271 3245 1859 61 61 16 chr9 100953273 100953520 -16909107 - AluY SINE Alu -53 258 1 562 282 73 86 chr9 100953520 100953984 -16908643 - L2 LINE L2 -27 3245 2776 1083 265 23 4 chr9 100954183 100954440 -16908187 - MIR SINE MIR 0 262 1 2281 99 23 0 chr9 100954524 100954827 -16907800 - AluSx SINE Alu -2 310 1 2204 102 0 0 chr9 100954881 100955174 -16907453 - AluSg SINE Alu -5 305 13 2012 104 3 65 chr9 100957119 100957427 -16905200 - AluSx SINE Alu -19 293 5 2066 131 0 3 chr9 100957776 100958090 -16904537 + AluSx SINE Alu 1 312 0 908 179 6 6 chr9 100958304 100958472 -16904155 + MER3 DNA MER1_type 1 168 -41 1277 82 0 0 chr9 100958528 100958686 -16903941 - AluSg/x SINE Alu -7 305 148 21 57 0 0 chr9 100958895 100958930 -16903697 + AT_rich Low_complexity Low_complexity 1 35 0 180 359 39 0 chr9 100959099 100959177 -16903450 + L3 LINE CR1 1494 1574 -3 394 290 129 16 chr9 100960317 100960503 -16902124 + MIR SINE MIR 54 260 -2 421 274 150 13 chr9 100960670 100960823 -16901804 - MIR SINE MIR -17 245 72 27 0 0 0 chr9 100960976 100961003 -16901624 + AT_rich Low_complexity Low_complexity 1 27 0 531 284 82 89 chr9 100961447 100961704 -16900923 - MIR SINE MIR -1 261 7 2321 129 0 15 chr9 100961830 100962171 -16900456 + MER1B DNA MER1_type 2 337 0 902 261 114 27 chr9 100962379 100962712 -16899915 + L2 LINE L2 2952 3313 0 278 313 116 9 chr9 100962818 100962930 -16899697 + MIR SINE MIR 18 141 -67 399 306 52 0 chr9 100963100 100963234 -16899393 + MIR3 SINE MIR 41 181 -27 21 0 0 0 chr9 100964606 100964627 -16898000 + AT_rich Low_complexity Low_complexity 1 21 0 2136 123 0 3 chr9 100964707 100965007 -16897620 - AluSx SINE Alu -13 299 1 2200 100 17 0 chr9 100965758 100966057 -16896570 + AluSx SINE Alu 1 304 -8 1944 233 21 36 chr9 100967040 100967560 -16895067 + L1M1 LINE L1 16 527 -7038 1459 128 62 45 chr9 100967566 100967855 -16894772 + MER49 LTR ERV1 1 294 -629 * 3124 195 13 42 chr9 100967839 100967903 -16894724 + MER4D LTR ERV1 60 124 -779 2339 108 0 0 chr9 100967903 100968210 -16894417 + AluSq SINE Alu 3 309 -4 3124 195 13 42 chr9 100968210 100968896 -16893731 + MER4D LTR ERV1 124 886 -17 9704 177 29 79 chr9 100968909 100971400 -16891227 + L1M1 LINE L1 528 3587 -3978 286 330 95 0 chr9 100971726 100971905 -16890722 - MIR SINE MIR -1 261 66 2144 124 0 0 chr9 100972031 100972322 -16890305 - AluSx SINE Alu -21 291 1 2330 194 83 12 chr9 100973142 100973637 -16888990 + MLT1F LTR MaLR 1 530 -12 26 30 0 0 chr9 100974337 100974370 -16888257 + AT_rich Low_complexity Low_complexity 1 33 0 2216 114 0 0 chr9 100974489 100974787 -16887840 + AluSx SINE Alu 1 298 -14 490 174 26 61 chr9 100974819 100974934 -16887693 - MER45B DNA AcHobo -3 1037 927 1269 141 15 0 chr9 100974938 100975137 -16887490 + AluSg/x SINE Alu 87 288 -22 4279 204 48 35 chr9 100975137 100976061 -16886566 - MER45B DNA AcHobo -104 936 1 447 141 0 0 chr9 100976250 100976321 -16886306 + MLT1A1 LTR MaLR 1 71 -294 2723 208 31 64 chr9 100976321 100977197 -16885430 - L1M4c LINE L1 -4761 1623 777 241 333 0 0 chr9 100977664 100977769 -16884858 + T-rich Low_complexity Low_complexity 1 105 0 24 0 0 0 chr9 100978208 100978232 -16884395 + AT_rich Low_complexity Low_complexity 1 24 0 2011 112 3 34 chr9 100978364 100978659 -16883968 + AluSx SINE Alu 3 288 -24 180 0 0 0 chr9 100979044 100979064 -16883563 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1514 153 0 95 chr9 100979077 100979371 -16883256 - AluJo SINE Alu -46 266 1 21 57 0 0 chr9 100979380 100979415 -16883212 + AT_rich Low_complexity Low_complexity 1 35 0 2447 83 3 0 chr9 100979616 100979917 -16882710 + AluSg SINE Alu 1 302 -8 2241 106 0 31 chr9 100980146 100980466 -16882161 + AluSx SINE Alu 1 310 -2 7084 136 22 36 chr9 100980466 100980567 -16882060 + L1MA5A LINE L1 3889 3990 -2307 1722 207 0 7 chr9 100980567 100980862 -16881765 + AluJo SINE Alu 1 293 -19 2184 109 0 26 chr9 100980864 100981175 -16881452 + AluSc SINE Alu 1 303 -6 7084 136 22 36 chr9 100981175 100981196 -16881431 + L1MA5A LINE L1 3991 4011 -2286 1557 156 80 75 chr9 100981196 100981569 -16881058 + THE1C LTR MaLR 1 375 0 7084 136 22 36 chr9 100981569 100983112 -16879515 + L1MA5A LINE L1 4011 5516 -781 1690 154 46 7 chr9 100983112 100983397 -16879230 - AluJo SINE Alu -16 296 1 7084 136 22 36 chr9 100983397 100983659 -16878968 + L1MA5A LINE L1 5516 5780 -517 2180 110 17 0 chr9 100983659 100983951 -16878676 + AluSp SINE Alu 1 297 -16 327 235 0 61 chr9 100983966 100984064 -16878563 + L1MC4 LINE L1 6612 6703 -1339 2934 118 24 14 chr9 100984096 100984606 -16878021 + L1MA5A LINE L1 5783 6297 0 1799 171 3 34 chr9 100984611 100984933 -16877694 + AluSx SINE Alu 1 312 0 28 29 0 0 chr9 100984949 100984984 -16877643 + AT_rich Low_complexity Low_complexity 1 35 0 1943 176 0 0 chr9 100984986 100985287 -16877340 + AluJo SINE Alu 1 301 -11 2407 70 6 6 chr9 100986108 100986420 -16876207 + AluSx SINE Alu 1 312 0 307 75 1 166 chr9 100986567 100986642 -16875985 + L1M2 LINE L1 5652 5715 -582 370 265 12 74 chr9 100986785 100986947 -16875680 + L2 LINE L2 2847 2998 -274 302 202 4 183 chr9 100987000 100987095 -16875532 - MIR SINE MIR -3 259 224 2420 73 10 0 chr9 100987095 100987397 -16875230 - AluSx SINE Alu -7 305 1 302 202 4 183 chr9 100987397 100987519 -16875108 - MIR SINE MIR -38 224 82 306 363 36 24 chr9 100987541 100987789 -16874838 - L2 LINE L2 -2302 1012 762 185 297 125 0 chr9 100987820 100987884 -16874743 + L2 LINE L2 3198 3269 -3 298 245 29 122 chr9 100989145 100989284 -16873343 + MIR SINE MIR 11 136 -126 954 253 60 12 chr9 100989287 100989536 -16873091 - MIR SINE MIR 0 262 2 291 223 129 29 chr9 100989655 100989794 -16872833 - L2 LINE L2 -77 3236 3084 1932 155 3 7 chr9 100991246 100991543 -16871084 + AluJb SINE Alu 1 296 -16 2066 124 24 3 chr9 100991715 100992006 -16870621 + AluSx SINE Alu 1 297 -15 2985 169 32 9 chr9 100992072 100992704 -16869923 - MER21B LTR ERV1 -82 781 84 871 161 0 0 chr9 100992969 100993099 -16869528 + FLAM_C SINE Alu 1 130 -3 545 132 0 0 chr9 100993106 100993197 -16869430 - Tigger4(Zombi) DNA MER2_type 0 2731 146 25 31 0 0 chr9 100993198 100993230 -16869397 + AT_rich Low_complexity Low_complexity 1 32 0 985 171 0 0 chr9 100993444 100993602 -16869025 - AluSg/x SINE Alu -9 303 146 401 314 147 26 chr9 100993671 100993862 -16868765 + MIR SINE MIR 5 218 -44 792 233 6 0 chr9 100993881 100994044 -16868583 - FAM SINE Alu -11 164 1 203 311 0 0 chr9 100994052 100994097 -16868530 + MIR SINE MIR 216 260 -2 446 259 124 5 chr9 100994123 100994308 -16868319 - MARNA DNA Mariner -227 359 153 2036 158 8 23 chr9 100994365 100994769 -16867858 - MER39 LTR ERV1 0 707 185 4016 190 34 20 chr9 100994883 100995659 -16866968 - MER21B LTR ERV1 -51 812 48 1331 227 112 8 chr9 100995659 100996051 -16866576 - MER57B LTR ERV1 -1 433 1 6677 124 70 10 chr9 100996053 100996273 -16866354 - Tigger3b DNA MER2_type -1797 1231 1026 2428 85 0 0 chr9 100996273 100996578 -16866049 + AluSg SINE Alu 1 305 -5 6677 124 70 10 chr9 100996578 100997519 -16865108 - Tigger3b DNA MER2_type -2002 1026 1 4016 190 34 20 chr9 100997519 100997540 -16865087 - MER21B LTR ERV1 -815 48 1 21 36 0 0 chr9 100997657 100997685 -16864942 + AT_rich Low_complexity Low_complexity 1 28 0 217 250 71 0 chr9 100998001 100998057 -16864570 - L2 LINE L2 0 3313 3254 2278 101 0 0 chr9 100998130 100998427 -16864200 - AluY SINE Alu -14 297 1 1081 224 55 13 chr9 100998692 100999000 -16863627 + L1ME3A LINE L1 5844 6164 -6 247 326 81 35 chr9 100999547 100999719 -16862908 - L2 LINE L2 -636 2678 2499 1474 293 106 43 chr9 100999747 101000217 -16862410 - L2 LINE L2 0 3272 2833 2195 107 0 38 chr9 101000217 101000534 -16862093 - AluSx SINE Alu -5 307 3 1474 293 106 43 chr9 101000534 101000988 -16861639 - L2 LINE L2 -439 2833 2409 2200 109 0 13 chr9 101000988 101001290 -16861337 + AluSq SINE Alu 1 298 -15 1474 293 106 43 chr9 101001290 101001558 -16861069 - L2 LINE L2 -863 2409 1948 234 135 0 0 chr9 101002635 101002672 -16859955 + tRNA-Cys-TGC tRNA tRNA 1 37 -38 420 325 141 5 chr9 101003320 101003526 -16859101 + MIR SINE MIR 10 243 -19 336 173 94 16 chr9 101003556 101003683 -16858944 + (CATTA)n Simple_repeat Simple_repeat 1 137 0 1199 189 9 26 chr9 101004195 101004390 -16858237 + MER58A DNA MER1_type 2 194 -2226 2252 102 60 26 chr9 101004390 101004742 -16857885 - THE1B LTR MaLR 0 364 1 1199 189 9 26 chr9 101004742 101004773 -16857854 + MER58A DNA MER1_type 194 224 0 2177 75 0 4 chr9 101005144 101005409 -16857218 + AluSq SINE Alu 1 264 -49 323 98 0 0 chr9 101005470 101005521 -16857106 - Alu SINE Alu 0 302 252 222 105 0 0 chr9 101005648 101005686 -16856941 + (TA)n Simple_repeat Simple_repeat 2 39 0 936 55 19 28 chr9 101005969 101006331 -16856296 + (TA)n Simple_repeat Simple_repeat 1 359 0 2058 104 17 7 chr9 101006331 101006620 -16856007 - AluSc SINE Alu -17 292 1 530 271 86 0 chr9 101006620 101006760 -16855867 + L2 LINE L2 3162 3313 0 1277 143 58 5 chr9 101006819 101007043 -16855584 + MER46A DNA MER2_type 1 236 0 330 283 71 26 chr9 101007191 101007304 -16855323 + L2 LINE L2 3194 3311 -2 1385 102 5 5 chr9 101007425 101007621 -16855006 + AluSc SINE Alu 84 279 -30 1644 192 47 26 chr9 101007679 101008065 -16854562 - MSTD LTR MaLR -2 394 1 21 71 0 0 chr9 101010113 101010155 -16852472 + AT_rich Low_complexity Low_complexity 1 42 0 218 253 34 130 chr9 101010288 101010434 -16852193 - MIR SINE MIR -47 215 84 22 56 0 0 chr9 101010705 101010741 -16851886 + AT_rich Low_complexity Low_complexity 1 36 0 197 267 133 75 chr9 101010835 101010955 -16851672 + MIR SINE MIR 86 212 -50 586 303 61 26 chr9 101011520 101011748 -16850879 + MIR SINE MIR 8 243 -19 25 0 0 0 chr9 101012091 101012116 -16850511 + AT_rich Low_complexity Low_complexity 1 25 0 541 320 180 6 chr9 101012215 101012537 -16850090 - L2 LINE L2 -8 3264 2887 34358 62 16 3 chr9 101012540 101018047 -16844580 + L1PA6 LINE L1 600 6154 0 2268 92 3 29 chr9 101018208 101018523 -16844104 - AluSp SINE Alu -6 307 1 207 333 29 0 chr9 101018573 101018642 -16843985 - L2 LINE L2 -639 2675 2605 335 222 99 0 chr9 101018646 101018727 -16843900 + 5S rRNA rRNA 1 89 -32 1255 278 191 52 chr9 101018727 101019570 -16843057 - L2 LINE L2 -700 2614 1564 2147 134 3 0 chr9 101019570 101019869 -16842758 + AluSx SINE Alu 1 300 -12 1255 278 191 52 chr9 101019869 101020189 -16842438 - L2 LINE L2 -1750 1564 1290 276 119 0 0 chr9 101020223 101020265 -16842362 + MER116 DNA Mariner 39 80 0 298 357 69 78 chr9 101020457 101020953 -16841674 - L2 LINE L2 -50 3222 2733 423 300 120 0 chr9 101021564 101021714 -16840913 + L3 LINE CR1 829 996 -581 803 193 0 0 chr9 101022166 101022306 -16840321 + FLAM_C SINE Alu 2 141 -2 1824 148 45 9 chr9 101022532 101022864 -16839763 + MER2 DNA MER2_type 1 344 0 529 287 100 41 chr9 101022945 101023436 -16839191 - L1MC4a LINE L1 -1969 5839 5320 361 200 77 39 chr9 101023703 101023833 -16838794 + MIR SINE MIR 72 206 -56 265 196 20 0 chr9 101024382 101024433 -16838194 - L2 LINE L2 0 3313 3262 589 281 110 11 chr9 101024699 101024924 -16837703 + MIR SINE MIR 3 261 -1 380 344 53 32 chr9 101025156 101025345 -16837282 + MIR3 SINE MIR 5 197 -11 21 57 0 0 chr9 101025783 101025818 -16836809 + AT_rich Low_complexity Low_complexity 1 35 0 27 29 0 0 chr9 101026581 101026615 -16836012 + AT_rich Low_complexity Low_complexity 1 34 0 24 53 0 0 chr9 101027239 101027277 -16835350 + AT_rich Low_complexity Low_complexity 1 38 0 658 281 84 42 chr9 101029441 101029800 -16832827 - L2 LINE L2 -20 3293 2920 29 0 0 0 chr9 101029878 101029907 -16832720 + AT_rich Low_complexity Low_complexity 1 29 0 1151 169 5 11 chr9 101029915 101030104 -16832523 - AluJo SINE Alu -92 220 33 657 316 55 36 chr9 101030106 101030435 -16832192 - L2 LINE L2 -517 2797 2463 716 255 35 56 chr9 101031045 101031211 -16831416 + MIR SINE MIR 37 198 -64 2507 64 0 0 chr9 101031211 101031506 -16831121 + AluY SINE Alu 1 295 -16 716 255 35 56 chr9 101031506 101031570 -16831057 + MIR SINE MIR 198 262 0 238 177 16 16 chr9 101032175 101032186 -16830441 + (TA)n Simple_repeat Simple_repeat 2 12 -51 2217 134 6 6 chr9 101032186 101032530 -16830097 - MER2 DNA MER2_type 0 344 1 238 177 16 16 chr9 101032530 101032580 -16830047 + (TA)n Simple_repeat Simple_repeat 11 63 0 239 218 0 0 chr9 101032580 101032635 -16829992 + L1MC4 LINE L1 6649 6703 -1339 2156 104 37 0 chr9 101032809 101033107 -16829520 - AluSc SINE Alu 0 309 1 1556 101 0 0 chr9 101033108 101033307 -16829320 - AluSg SINE Alu -111 199 1 188 227 144 62 chr9 101033952 101034049 -16828578 + L2 LINE L2 3148 3252 -61 21 0 0 0 chr9 101034373 101034394 -16828233 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 101034605 101034626 -16828001 + AT_rich Low_complexity Low_complexity 1 21 0 195 283 67 0 chr9 101034698 101034758 -16827869 - MIR SINE MIR -1 261 198 270 254 15 0 chr9 101036184 101036251 -16826376 + MIR3 SINE MIR 96 163 -45 260 267 43 19 chr9 101036604 101036765 -16825862 - L1ME4a LINE L1 -4 6117 5953 1847 113 0 63 chr9 101036811 101037136 -16825491 + AluSx SINE Alu 1 306 0 430 250 115 32 chr9 101037178 101037334 -16825293 + MIR SINE MIR 72 240 -22 226 226 12 107 chr9 101038135 101038169 -16824458 + MIR SINE MIR 171 207 -55 1913 145 0 23 chr9 101038169 101038473 -16824154 + AluJb SINE Alu 1 297 -15 226 226 12 107 chr9 101038473 101038522 -16824105 + MIR SINE MIR 207 246 -16 21 36 0 0 chr9 101038655 101038683 -16823944 + AT_rich Low_complexity Low_complexity 1 28 0 2229 87 28 0 chr9 101038684 101038972 -16823655 - AluY SINE Alu -15 296 1 22 0 0 0 chr9 101040013 101040035 -16822592 + AT_rich Low_complexity Low_complexity 1 22 0 804 276 67 39 chr9 101040241 101040323 -16822304 - L1ME3A LINE L1 -302 5868 5790 2254 93 7 0 chr9 101040323 101040633 -16821994 - AluSp SINE Alu -1 312 1 804 276 67 39 chr9 101040633 101041014 -16821613 - L1ME3A LINE L1 -380 5790 5474 498 206 25 0 chr9 101041016 101041136 -16821491 - L1MD3 LINE L1 -4 8038 7904 36274 78 12 9 chr9 101041170 101047297 -16815330 - L1PA6 LINE L1 -1 6153 11 779 168 0 0 chr9 101047324 101047467 -16815160 - L1MC4 LINE L1 -132 7910 7768 314 333 169 5 chr9 101047528 101047735 -16814892 - L1MC4 LINE L1 0 8042 7802 245 185 0 46 chr9 101047735 101047800 -16814827 - L1MC5 LINE L1 -271 7690 7629 2146 103 3 27 chr9 101047807 101048108 -16814519 - AluSc SINE Alu -15 294 1 306 281 12 0 chr9 101048203 101048285 -16814342 - L1MC5 LINE L1 -520 7441 7359 313 310 9 9 chr9 101048374 101048490 -16814137 - L1M4 LINE L1 -810 5336 5221 423 358 48 6 chr9 101048781 101049005 -16813622 + MIR SINE MIR 10 245 -17 297 208 174 65 chr9 101049598 101049808 -16812819 + MIR SINE MIR 1 259 -3 2106 106 7 7 chr9 101049832 101050124 -16812503 - AluSx SINE Alu -20 292 1 360 304 123 74 chr9 101050228 101050659 -16811968 - L2 LINE L2 -8 3264 2813 241 287 148 33 chr9 101050866 101050988 -16811639 + L2 LINE L2 3136 3271 -1 32 0 0 0 chr9 101051232 101051264 -16811363 + AT_rich Low_complexity Low_complexity 1 32 0 535 261 43 58 chr9 101051543 101051731 -16810896 - MER5A DNA MER1_type -3 186 2 292 253 51 0 chr9 101051759 101051838 -16810789 - MER5B DNA MER1_type -26 152 70 294 233 117 15 chr9 101053170 101053376 -16809251 - L1MC5 LINE L1 -35 7926 7700 1045 311 137 20 chr9 101056139 101056738 -16805889 + L2 LINE L2 740 1408 -1906 603 310 139 16 chr9 101056750 101057066 -16805561 + L2 LINE L2 2507 2861 -453 382 229 208 0 chr9 101057263 101057359 -16805268 - L2 LINE L2 -2 3311 3196 2066 124 0 7 chr9 101059126 101059425 -16803202 + AluSx SINE Alu 1 297 -15 259 353 59 20 chr9 101060107 101060209 -16802418 - L2 LINE L2 -9 3304 3199 2145 117 0 10 chr9 101060511 101060819 -16801808 - AluSx SINE Alu -7 305 1 250 252 26 113 chr9 101062524 101062675 -16799952 + L2 LINE L2 2944 3081 -191 307 240 160 0 chr9 101062778 101062878 -16799749 + MIR SINE MIR 36 151 -111 2343 88 0 16 chr9 101062906 101063211 -16799416 - AluSx SINE Alu -3 309 10 512 208 117 0 chr9 101064168 101064288 -16798339 + FLAM_A SINE Alu 8 141 -1 243 333 29 0 chr9 101064422 101064527 -16798100 + (TATATG)n Simple_repeat Simple_repeat 4 111 0 401 279 89 6 chr9 101064647 101064805 -16797822 - L1ME4a LINE L1 -174 5947 5777 2278 106 3 3 chr9 101064892 101065204 -16797423 - AluSx SINE Alu 0 312 1 23 0 0 0 chr9 101066208 101066231 -16796396 + AT_rich Low_complexity Low_complexity 1 23 0 708 192 158 0 chr9 101066259 101066436 -16796191 + MER3 DNA MER1_type 5 209 0 196 378 89 34 chr9 101066461 101066752 -16795875 + L2 LINE L2 2375 2681 -633 286 330 184 36 chr9 101066838 101067202 -16795425 + L2 LINE L2 2851 3268 -4 378 254 73 42 chr9 101067535 101067700 -16794927 - L1ME4a LINE L1 -1 6120 5951 367 338 58 34 chr9 101068516 101068723 -16793904 + MIR SINE MIR 19 230 -32 1031 69 0 0 chr9 101068896 101069026 -16793601 - AluSg SINE Alu -13 299 170 804 100 27 0 chr9 101069026 101069136 -16793491 - AluSg SINE Alu -197 113 1 218 319 188 0 chr9 101069194 101069338 -16793289 - MIR SINE MIR -14 248 78 23 68 0 0 chr9 101069619 101069663 -16792964 + AT_rich Low_complexity Low_complexity 1 44 0 22 56 0 0 chr9 101072008 101072044 -16790583 + AT_rich Low_complexity Low_complexity 1 36 0 297 338 51 13 chr9 101072707 101072864 -16789763 + L2 LINE L2 2886 3048 -224 1903 116 0 4 chr9 101072865 101073115 -16789512 + AluSc SINE Alu 1 249 -60 714 89 10 0 chr9 101073115 101073216 -16789411 + AluSc SINE Alu 198 299 -10 1625 199 7 3 chr9 101074211 101074493 -16788134 + AluJo SINE Alu 1 283 -29 439 186 69 62 chr9 101074692 101074837 -16787790 + L1ME4a LINE L1 5975 6120 -1 22 56 0 0 chr9 101074907 101074943 -16787684 + AT_rich Low_complexity Low_complexity 1 36 0 677 237 0 0 chr9 101075029 101075160 -16787467 - FLAM_A SINE Alu -2 131 1 24 0 0 0 chr9 101075211 101075235 -16787392 + AT_rich Low_complexity Low_complexity 1 24 0 2689 188 37 72 chr9 101076023 101076571 -16786056 + L1ME1 LINE L1 4497 5063 -1103 1497 176 73 0 chr9 101076571 101076843 -16785784 + AluJb SINE Alu 1 292 -20 2689 188 37 72 chr9 101076843 101077379 -16785248 + L1ME1 LINE L1 5063 5493 -673 2430 77 0 0 chr9 101077379 101077677 -16784950 - AluY SINE Alu -13 298 1 2689 188 37 72 chr9 101077677 101078092 -16784535 + L1ME1 LINE L1 5493 5921 -245 614 106 190 21 chr9 101078696 101078838 -16783789 + L1MB8 LINE L1 6013 6178 0 225 253 58 0 chr9 101078878 101078965 -16783662 - L1ME4a LINE L1 -67 6054 5963 444 210 28 119 chr9 101079129 101079272 -16783355 - MIR SINE MIR -70 192 63 303 232 105 0 chr9 101079289 101079384 -16783243 - L1ME4a LINE L1 -536 5585 5481 2438 75 3 0 chr9 101080254 101080548 -16782079 + AluSp SINE Alu 2 296 -17 1916 110 15 4 chr9 101080568 101080832 -16781795 + AluSx SINE Alu 28 294 -18 2089 125 3 0 chr9 101083670 101083957 -16778670 - AluSx SINE Alu -24 288 1 2229 117 3 0 chr9 101083966 101084266 -16778361 - AluSg SINE Alu -9 301 1 312 222 56 22 chr9 101084617 101084707 -16777920 - MIR SINE MIR -73 189 97 241 188 188 12 chr9 101084787 101084872 -16777755 - MIR SINE MIR -112 150 51 1988 160 0 0 chr9 101085872 101086178 -16776449 + AluJb SINE Alu 1 306 -6 283 290 148 18 chr9 101086317 101086486 -16776141 - MIR SINE MIR -41 221 31 227 333 75 32 chr9 101087588 101087774 -16774853 - L2 LINE L2 -908 2406 2213 975 160 77 0 chr9 101087855 101088049 -16774578 - MER3 DNA MER1_type 0 209 1 1870 154 0 7 chr9 101088783 101089082 -16773545 - AluJo SINE Alu -15 297 1 293 279 224 11 chr9 101089603 101089782 -16772845 - MIR SINE MIR -12 250 34 241 289 53 0 chr9 101089849 101089925 -16772702 - MIR SINE MIR -89 119 40 357 65 0 0 chr9 101090308 101090354 -16772273 - U2 snRNA snRNA -136 52 7 2488 88 0 0 chr9 101095252 101095559 -16767068 - AluSc SINE Alu -2 307 1 896 218 19 23 chr9 101097110 101097326 -16765301 - MER58C DNA MER1_type 0 215 1 399 294 18 18 chr9 101097517 101097626 -16765001 - MIR3 SINE MIR -53 155 47 2316 218 39 36 chr9 101098742 101099412 -16763215 - L1MD2 LINE L1 -17 6342 5671 309 305 124 88 chr9 101099598 101099962 -16762665 + L2 LINE L2 2879 3255 -17 473 221 26 0 chr9 101100055 101100168 -16762459 - L1MD1 LINE L1 -8 6234 6119 26 64 0 0 chr9 101100566 101100613 -16762014 + AT_rich Low_complexity Low_complexity 1 47 0 210 271 0 0 chr9 101101360 101101408 -16761219 - MIR3 SINE MIR -51 157 110 40 59 0 0 chr9 101101971 101102039 -16760588 + AT_rich Low_complexity Low_complexity 1 68 0 1848 187 55 23 chr9 101102295 101102734 -16759893 - L1MB7 LINE L1 -1 6183 5731 407 229 16 49 chr9 101103113 101103235 -16759392 + MER103 DNA DNA 2 119 -47 21 0 0 0 chr9 101103765 101103786 -16758841 + AT_rich Low_complexity Low_complexity 1 21 0 1069 201 37 5 chr9 101104439 101104653 -16757974 - MER58A DNA MER1_type -2 222 2 888 185 0 19 chr9 101104864 101105021 -16757606 - FRAM SINE Alu -25 151 1 25 31 0 0 chr9 101105427 101105459 -16757168 + AT_rich Low_complexity Low_complexity 1 32 0 327 25 0 0 chr9 101107604 101107644 -16754983 + (CA)n Simple_repeat Simple_repeat 1 40 0 551 140 0 70 chr9 101107655 101107755 -16754872 - AluJ/FLAM SINE Alu -219 93 1 762 214 121 13 chr9 101109921 101110145 -16752482 - MIR SINE MIR -13 249 2 533 310 61 10 chr9 101110380 101110577 -16752050 - MIR SINE MIR -36 226 20 432 265 164 62 chr9 101111102 101111531 -16751096 + L1MC4a LINE L1 5450 5924 -197 216 0 0 0 chr9 101111534 101111558 -16751069 + (CA)n Simple_repeat Simple_repeat 2 25 0 395 287 0 30 chr9 101112187 101112288 -16750339 - L2 LINE L2 -17 3296 3199 445 228 124 14 chr9 101112702 101112847 -16749780 + L1MC5 LINE L1 7749 7909 -52 315 258 166 8 chr9 101113238 101113424 -16749203 - MIR3 SINE MIR -1 261 3 303 190 69 0 chr9 101113430 101113488 -16749139 - L2 LINE L2 -2 3311 3250 852 197 87 14 chr9 101113490 101113698 -16748929 - MIR SINE MIR -26 236 14 196 341 83 23 chr9 101113929 101114061 -16748566 + MIR SINE MIR 45 184 -78 273 289 75 16 chr9 101114280 101114413 -16748214 + MIR SINE MIR 102 244 -18 23 0 0 0 chr9 101114572 101114595 -16748032 + GC_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr9 101115027 101115064 -16747563 + GC_rich Low_complexity Low_complexity 1 37 0 200 250 16 47 chr9 101115751 101115815 -16746812 - MIR SINE MIR -12 250 189 357 241 0 0 chr9 101115900 101115979 -16746648 - MIR SINE MIR -115 147 69 860 121 27 194 chr9 101116131 101116358 -16746269 + ORSL DNA AcHobo 1 264 -11 2535 27 7 3 chr9 101116358 101116654 -16745973 + AluY SINE Alu 1 297 -14 860 121 27 194 chr9 101116654 101116670 -16745957 + ORSL DNA AcHobo 264 179 -96 1726 124 79 21 chr9 101116670 101116961 -16745666 + 7SLRNA srpRNA srpRNA 4 311 -9 860 121 27 194 chr9 101116961 101117046 -16745581 + ORSL DNA AcHobo 178 275 0 429 310 123 6 chr9 101117182 101117353 -16745274 + MIR SINE MIR 47 237 -25 560 256 22 0 chr9 101117619 101117756 -16744871 - MIR SINE MIR -4 258 119 299 274 33 39 chr9 101117974 101118127 -16744500 + HsTC2 DNA Tc2 490 641 -1257 897 242 13 21 chr9 101118129 101118440 -16744187 + L1MC4a LINE L1 5641 5945 -1863 622 178 124 0 chr9 101120262 101120415 -16742212 - AluSg/x SINE Alu 0 304 136 2002 189 54 12 chr9 101120695 101121119 -16741508 - LTR40b LTR ERVL -20 442 1 1668 190 41 0 chr9 101121269 101121437 -16741190 - AluJb SINE Alu -5 307 120 333 0 0 0 chr9 101121437 101121474 -16741153 + (TG)n Simple_repeat Simple_repeat 2 38 0 1668 190 41 0 chr9 101121474 101121600 -16741027 - AluJb SINE Alu -192 120 1 267 278 68 80 chr9 101121600 101121762 -16740865 + MIR SINE MIR 96 255 -7 1041 255 159 34 chr9 101121885 101122332 -16740295 - MLT1J LTR MaLR -8 503 1 556 293 35 25 chr9 101123050 101123248 -16739379 + MIR SINE MIR 49 248 -14 1003 260 19 66 chr9 101123596 101123955 -16738672 - MLT1I LTR MaLR 0 409 96 213 194 194 0 chr9 101124053 101124115 -16738512 + MIR SINE MIR 75 148 -114 288 267 116 0 chr9 101124326 101124412 -16738215 - MIR SINE MIR -36 226 131 2263 126 46 46 chr9 101124412 101124865 -16737762 + L1MB3 LINE L1 5730 6182 -1 396 297 90 13 chr9 101125067 101125222 -16737405 + MIR3 SINE MIR 1 167 -41 618 234 28 14 chr9 101125771 101125916 -16736711 + MIR SINE MIR 47 193 -69 2182 112 0 16 chr9 101126159 101126462 -16736165 - AluSx SINE Alu -14 298 1 191 290 101 14 chr9 101127067 101127136 -16735491 + MIR SINE MIR 28 102 -160 345 284 0 0 chr9 101127189 101127284 -16735343 - MIR3 SINE MIR 0 208 114 449 249 124 73 chr9 101127445 101127678 -16734949 + MIR SINE MIR 18 262 0 498 212 12 24 chr9 101127678 101127848 -16734779 + CT-rich Low_complexity Low_complexity 1 168 0 319 313 100 20 chr9 101127897 101128047 -16734580 + MIR SINE MIR 97 258 -4 1821 178 35 66 chr9 101128411 101128893 -16733734 - MLT1C LTR MaLR 0 467 1 2315 105 3 0 chr9 101128926 101129220 -16733407 + AluSx SINE Alu 1 295 -17 189 0 0 0 chr9 101129510 101129531 -16733096 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 1563 124 44 0 chr9 101129536 101129761 -16732866 - AluSq SINE Alu -78 235 1 241 235 0 44 chr9 101129793 101129861 -16732766 + L2 LINE L2 2687 2751 -563 1233 161 36 62 chr9 101130278 101130591 -16732036 - MLT1B LTR MaLR 0 390 70 2192 103 0 26 chr9 101130591 101130893 -16731734 + AluSg SINE Alu 1 294 -16 1259 92 0 0 chr9 101130893 101131066 -16731561 - L1PA13 LINE L1 -10 6153 5981 1233 161 36 62 chr9 101131066 101131249 -16731378 - MLT1B LTR MaLR -318 72 1 42 20 0 0 chr9 101131257 101131306 -16731321 + AT_rich Low_complexity Low_complexity 1 49 0 351 0 0 0 chr9 101131311 101131350 -16731277 + (TTA)n Simple_repeat Simple_repeat 3 41 0 675 263 114 59 chr9 101131706 101131865 -16730762 - MER65A LTR ERV1 0 445 296 1946 164 0 0 chr9 101131865 101132163 -16730464 + AluSx SINE Alu 1 298 -14 675 263 114 59 chr9 101132163 101132425 -16730202 - MER65A LTR ERV1 -149 296 1 811 122 15 23 chr9 101132772 101132903 -16729724 - FLAM_C SINE Alu -7 136 7 3317 138 2 25 chr9 101133032 101133381 -16729246 + MER41E LTR ERV1 3 338 -174 2559 73 0 6 chr9 101133381 101133695 -16728932 - AluSp SINE Alu -1 312 1 3317 138 2 25 chr9 101133695 101133866 -16728761 + MER41E LTR ERV1 338 511 -1 368 272 0 0 chr9 101133954 101134068 -16728559 - MIR SINE MIR -89 173 60 1233 218 148 14 chr9 101134078 101134504 -16728123 - MER113 DNA MER1_type? -1 520 38 385 315 73 6 chr9 101135082 101135247 -16727380 + MIR3 SINE MIR 21 196 -12 680 189 59 105 chr9 101135825 101136131 -16726496 - LTR37A LTR ERV1 -9 417 126 4125 146 31 17 chr9 101136171 101136872 -16725755 - MER50 LTR ERV1 -23 711 1 385 205 33 66 chr9 101136872 101136992 -16725635 - LTR37A LTR ERV1 -292 134 19 239 231 0 77 chr9 101137051 101137129 -16725498 - MIR SINE MIR -5 257 186 2006 140 3 0 chr9 101137186 101137471 -16725156 - AluSx SINE Alu -26 286 1 347 260 0 21 chr9 101137503 101137599 -16725028 - L1MC/D LINE L1 -2293 5515 5422 2380 62 0 10 chr9 101137603 101137911 -16724716 - AluY SINE Alu 0 305 1 180 380 15 51 chr9 101137969 101138106 -16724521 - MIR3 SINE MIR -41 167 36 192 77 0 0 chr9 101138254 101138280 -16724347 + (A)n Simple_repeat Simple_repeat 1 26 0 207 0 0 0 chr9 101138321 101138344 -16724283 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 1867 155 3 3 chr9 101138347 101138631 -16723996 - AluJo SINE Alu -28 284 1 222 332 44 76 chr9 101139102 101139317 -16723310 + MIR SINE MIR 10 217 -45 2221 111 0 3 chr9 101139317 101139615 -16723012 - AluSg SINE Alu -12 298 2 222 332 44 76 chr9 101139615 101139649 -16722978 + MIR SINE MIR 217 251 -11 197 345 55 21 chr9 101139699 101139844 -16722783 - L2 LINE L2 -2 3270 3121 350 181 11 106 chr9 101140085 101140179 -16722448 + MER21B LTR ERV1 12 96 -767 3033 224 72 38 chr9 101140186 101140624 -16722003 + MER21B LTR ERV1 19 499 -364 2307 102 0 0 chr9 101140624 101140918 -16721709 + AluSx SINE Alu 1 294 -18 3033 224 72 38 chr9 101140918 101141293 -16721334 + MER21B LTR ERV1 499 860 -3 207 247 12 35 chr9 101141700 101141785 -16720842 + L2 LINE L2 3186 3268 -4 198 0 0 0 chr9 101141917 101141939 -16720688 + (TA)n Simple_repeat Simple_repeat 2 23 0 2109 134 30 0 chr9 101141939 101142238 -16720389 - AluJb SINE Alu -4 308 1 2103 220 85 104 chr9 101142246 101142740 -16719887 - L1MC4 LINE L1 -2 8040 7538 2174 103 13 3 chr9 101142740 101143041 -16719586 - AluSx SINE Alu -8 304 1 2103 220 85 104 chr9 101143041 101143740 -16718887 - L1MC4 LINE L1 -504 7538 6870 228 298 48 0 chr9 101143744 101143852 -16718775 - MIR SINE MIR -61 147 32 499 240 127 13 chr9 101144127 101144277 -16718350 + MIR SINE MIR 82 248 -14 21 36 0 0 chr9 101145302 101145330 -16717297 + AT_rich Low_complexity Low_complexity 1 28 0 1918 129 40 0 chr9 101145333 101145605 -16717022 + AluSg SINE Alu 1 283 -27 222 322 70 9 chr9 101145722 101145837 -16716790 + L2 LINE L2 3151 3272 0 703 181 0 8 chr9 101146094 101146221 -16716406 - L1MB1 LINE L1 -1 6167 6042 986 254 81 78 chr9 101146383 101146501 -16716126 - ERVL LTR ERVL -742 5022 4906 817 239 182 63 chr9 101146501 101146725 -16715902 + MLT1H1 LTR MaLR 1 197 -358 2105 103 0 14 chr9 101146725 101147007 -16715620 + AluSg SINE Alu 1 278 -32 234 0 0 0 chr9 101147007 101147033 -16715594 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 817 239 182 63 chr9 101147033 101147301 -16715326 + MLT1H1 LTR MaLR 196 553 -2 986 254 81 78 chr9 101147301 101147420 -16715207 - ERVL LTR ERVL -858 4906 4789 815 254 154 46 chr9 101147420 101147881 -16714746 - MLT1J LTR MaLR 0 511 1 986 254 81 78 chr9 101147881 101148261 -16714366 - ERVL LTR ERVL -975 4789 4402 657 241 0 14 chr9 101148268 101148413 -16714214 + FRAM SINE Alu 4 146 -30 182 88 0 29 chr9 101148413 101148447 -16714180 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 436 189 26 157 chr9 101149290 101149481 -16713146 - MLT1J2 LTR MaLR -284 166 1 858 228 62 33 chr9 101149514 101149755 -16712872 - MLT1C LTR MaLR 0 467 220 2018 120 18 0 chr9 101149813 101150087 -16712540 - AluSg SINE Alu -31 279 1 1594 166 47 20 chr9 101150858 101151154 -16711473 + AluJb SINE Alu 1 304 -8 2186 152 68 26 chr9 101151741 101152255 -16710372 + MLT2A2 LTR ERVL 1 554 0 834 203 21 70 chr9 101153686 101153928 -16708699 - MLT1C LTR MaLR -160 230 1 321 317 7 21 chr9 101155050 101155195 -16707432 + MIR SINE MIR 50 192 -70 193 180 197 0 chr9 101155747 101155808 -16706819 + MIR SINE MIR 178 250 -12 547 249 118 14 chr9 101156231 101156452 -16706175 + MLT1L LTR MaLR 1 244 -371 315 265 0 92 chr9 101156565 101156613 -16706014 + L1MC4a LINE L1 5528 5564 -2244 2268 170 53 36 chr9 101156613 101157107 -16705520 - MLT1D LTR MaLR -3 502 1 315 265 0 92 chr9 101157107 101157156 -16705471 + L1MC4a LINE L1 5564 5616 -2192 3028 203 25 55 chr9 101157168 101157225 -16705402 - L1ME1 LINE L1 -6 6160 6103 2092 104 0 11 chr9 101157225 101157503 -16705124 - AluSq SINE Alu -38 275 1 3028 203 25 55 chr9 101157503 101158189 -16704438 - L1ME1 LINE L1 -63 6103 5439 887 259 70 13 chr9 101158189 101158502 -16704125 + L1MC4a LINE L1 5622 5952 -1856 1800 144 11 25 chr9 101158984 101159289 -16703338 - AluJo SINE Alu 0 307 7 966 181 0 6 chr9 101159392 101159552 -16703075 - FAM SINE Alu -16 159 1 733 245 34 53 chr9 101159581 101159903 -16702724 + L1MC5 LINE L1 7610 7925 -36 301 303 0 0 chr9 101159935 101160011 -16702616 + MLT1L LTR MaLR 338 413 -202 189 211 0 0 chr9 101161718 101161756 -16700871 - MIR SINE MIR -64 144 107 1119 107 0 44 chr9 101161829 101161988 -16700639 - AluSg/x SINE Alu -21 291 140 259 167 14 28 chr9 101162048 101162120 -16700507 + CT-rich Low_complexity Low_complexity 1 71 0 340 321 113 31 chr9 101162299 101162785 -16699842 - L2 LINE L2 -277 3036 2507 1934 124 0 57 chr9 101162828 101163142 -16699485 + AluJb SINE Alu 1 296 -16 326 152 98 33 chr9 101163401 101163493 -16699134 + MLT1K LTR MaLR 189 286 -302 1176 192 0 30 chr9 101163859 101164130 -16698497 - AluSg SINE Alu -10 300 38 1557 130 14 0 chr9 101165475 101165690 -16696937 + MER1B DNA MER1_type 122 339 0 2459 67 0 0 chr9 101165782 101166081 -16696546 + AluY SINE Alu 1 299 -12 204 152 0 22 chr9 101166082 101166128 -16696499 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 500 293 29 6 chr9 101166701 101166875 -16695752 + MER5A DNA MER1_type 1 189 0 228 35 0 0 chr9 101166891 101166920 -16695707 + (TG)n Simple_repeat Simple_repeat 2 30 0 1400 206 78 95 chr9 101167010 101167545 -16695082 - MER34B LTR ERV1 -1 564 38 2108 105 3 41 chr9 101167545 101167860 -16694767 + AluSx SINE Alu 1 303 -9 1400 206 78 95 chr9 101167860 101167891 -16694736 - MER34B LTR ERV1 -527 38 8 1681 255 37 29 chr9 101168762 101169316 -16693311 - MER74A LTR ERVL -1 621 1 297 291 97 0 chr9 101169516 101169650 -16692977 + L2 LINE L2 3167 3313 0 323 328 58 23 chr9 101169653 101169827 -16692800 + MIR SINE MIR 54 233 -29 257 219 0 55 chr9 101170313 101170386 -16692241 - L2 LINE L2 -1018 2296 2228 1695 66 0 0 chr9 101170702 101170899 -16691728 + AluY SINE Alu 1 197 -114 21 0 0 0 chr9 101171467 101171488 -16691139 + AT_rich Low_complexity Low_complexity 1 21 0 1888 116 4 11 chr9 101171498 101171773 -16690854 - AluSg SINE Alu -37 273 1 1861 145 0 11 chr9 101171823 101172105 -16690522 - AluSg SINE Alu -27 283 5 342 0 0 0 chr9 101172148 101172186 -16690441 + (TG)n Simple_repeat Simple_repeat 1 38 0 1160 173 0 20 chr9 101172203 101172400 -16690227 - AluJo SINE Alu -119 193 1 1932 138 6 51 chr9 101172459 101172771 -16689856 - AluSx SINE Alu -14 298 1 2205 87 0 17 chr9 101172955 101173278 -16689349 + AluSq SINE Alu 1 318 0 315 140 0 0 chr9 101173305 101173355 -16689272 - L2 LINE L2 -3 3310 3261 852 251 100 69 chr9 101173740 101174131 -16688496 + MLT1I LTR MaLR 7 409 0 1517 183 33 38 chr9 101174177 101174544 -16688083 - MLT1A1 LTR MaLR 0 365 1 786 241 129 86 chr9 101176039 101176247 -16686380 - L1MC4a LINE L1 -1631 6177 5979 2284 71 4 0 chr9 101176247 101176559 -16686068 - AluY SINE Alu 0 313 1 1630 170 28 7 chr9 101176560 101176849 -16685778 - AluJb SINE Alu -17 295 1 786 241 129 86 chr9 101176849 101177181 -16685446 - L1MC4a LINE L1 -1828 5980 5611 2858 134 30 39 chr9 101177621 101177915 -16684712 + L1MA4 LINE L1 5769 6057 -243 2105 106 0 50 chr9 101177915 101178235 -16684392 + AluSq SINE Alu 1 304 -9 2858 134 30 39 chr9 101178235 101178477 -16684150 + L1MA4 LINE L1 6057 6300 0 450 315 27 51 chr9 101178571 101178828 -16683799 - MIR SINE MIR 0 262 12 1944 128 0 31 chr9 101178924 101179244 -16683383 + AluSx SINE Alu 3 312 0 1892 113 0 23 chr9 101179559 101179824 -16682803 + AluSx SINE Alu 40 298 -14 206 61 0 30 chr9 101180237 101180270 -16682357 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 382 357 77 0 chr9 101180270 101180413 -16682214 - L2 LINE L2 -17 3255 3102 295 336 71 28 chr9 101180423 101180676 -16681951 - L2 LINE L2 -4 3309 3046 237 167 77 90 chr9 101181560 101181638 -16680989 - L1MDb LINE L1 -5893 516 440 296 344 38 0 chr9 101181986 101182117 -16680510 - MIR3 SINE MIR -38 170 35 242 257 9 57 chr9 101182172 101182277 -16680350 + GA-rich Low_complexity Low_complexity 2 101 0 234 62 0 0 chr9 101182311 101182343 -16680284 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 431 322 28 17 chr9 101182794 101182971 -16679656 + MIR SINE MIR 21 199 -63 287 219 183 0 chr9 101183203 101183285 -16679342 - MIR SINE MIR -68 194 98 676 264 114 9 chr9 101183631 101183851 -16678776 + MIR SINE MIR 20 262 0 375 356 15 0 chr9 101184298 101184430 -16678197 - L2 LINE L2 0 3272 3139 1489 186 49 17 chr9 101184487 101184776 -16677851 + MER63B DNA MER1_type 1 304 -758 1201 195 51 48 chr9 101184776 101184993 -16677634 - THE1C LTR MaLR 0 375 155 1281 194 16 25 chr9 101184993 101185308 -16677319 + AluSp SINE Alu 1 312 -1 1201 195 51 48 chr9 101185308 101185464 -16677163 - THE1C LTR MaLR -220 155 1 1489 186 49 17 chr9 101185464 101185523 -16677104 + MER63B DNA MER1_type 304 360 -76 1623 178 17 11 chr9 101185563 101185850 -16676777 + AluJo SINE Alu 1 289 -23 371 164 21 14 chr9 101186480 101186561 -16676066 + LTR16A1 LTR ERVL 374 486 -5 268 91 0 36 chr9 101187386 101187441 -16675186 + (CAT)n Simple_repeat Simple_repeat 2 54 0 302 263 10 50 chr9 101187581 101187680 -16674947 + MIR3 SINE MIR 110 204 -4 252 314 64 85 chr9 101188043 101188231 -16674396 + MIR SINE MIR 67 250 -12 433 319 43 0 chr9 101188858 101189021 -16673606 - MIR SINE MIR -70 192 23 33 66 0 0 chr9 101189489 101189550 -16673077 + GC_rich Low_complexity Low_complexity 1 61 0 21 0 0 0 chr9 101189557 101189578 -16673049 + GC_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr9 101189642 101189665 -16672962 + GC_rich Low_complexity Low_complexity 1 23 0 229 105 26 0 chr9 101190110 101190148 -16672479 - L3 LINE CR1 -186 1391 1353 284 293 36 18 chr9 101190733 101190862 -16671765 - MIR3 SINE MIR -54 154 23 421 296 183 31 chr9 101191521 101191903 -16670724 - L2 LINE L2 -337 2977 2538 338 195 105 16 chr9 101192353 101192481 -16670146 + MIR3 SINE MIR 13 163 -45 499 280 109 25 chr9 101192481 101192504 -16670123 - MIR SINE MIR 0 262 242 1765 166 62 0 chr9 101192504 101192793 -16669834 + AluSx SINE Alu 3 309 -3 499 280 109 25 chr9 101192793 101193008 -16669619 - MIR SINE MIR -20 242 4 285 277 74 27 chr9 101193732 101193880 -16668747 + MIR3 SINE MIR 43 197 -11 193 212 0 0 chr9 101194010 101194043 -16668584 - MIR SINE MIR -62 146 114 329 227 82 46 chr9 101194082 101194243 -16668384 - MIR SINE MIR 0 262 96 274 313 50 0 chr9 101194248 101194347 -16668280 - MIR SINE MIR -70 192 89 287 256 137 68 chr9 101194917 101195210 -16667417 - L1ME4a LINE L1 -37 6084 5772 560 265 84 49 chr9 101195720 101195920 -16666707 - L1ME4a LINE L1 -317 5804 5590 2706 129 47 6 chr9 101195920 101196386 -16666241 - MER31A LTR ERV1 0 485 1 560 265 84 49 chr9 101196386 101196472 -16666155 - L1ME4a LINE L1 -531 5590 5508 221 371 47 12 chr9 101196597 101196764 -16665863 + MIR SINE MIR 2 147 -61 239 338 101 29 chr9 101197229 101197279 -16665348 + MER5A DNA MER1_type 41 86 -103 429 180 280 20 chr9 101197279 101197429 -16665198 + MER53 DNA DNA 1 189 0 239 338 101 29 chr9 101197429 101197517 -16665110 + MER5A DNA MER1_type 86 189 0 186 171 0 0 chr9 101197734 101197769 -16664858 + MIR SINE MIR 109 143 -65 296 333 10 0 chr9 101198006 101198102 -16664525 - MIR3 SINE MIR -34 174 78 1366 46 0 0 chr9 101198194 101198369 -16664258 + L1PA5 LINE L1 5980 6154 0 448 186 297 0 chr9 101198737 101198855 -16663772 - MER5A DNA MER1_type -28 161 9 883 175 55 25 chr9 101199237 101199437 -16663190 + MER58C DNA MER1_type 10 215 0 425 269 150 35 chr9 101199514 101199741 -16662886 + MIR SINE MIR 8 260 -2 477 283 107 42 chr9 101200574 101200984 -16661643 - L2 LINE L2 -411 2903 2467 437 320 59 0 chr9 101201743 101201896 -16660731 - L2 LINE L2 0 3272 3111 350 217 11 22 chr9 101202118 101202210 -16660417 - MIR SINE MIR -99 163 73 1164 335 68 15 chr9 101202253 101202870 -16659757 + L3 LINE CR1 920 1569 -8 252 300 27 0 chr9 101203202 101203312 -16659315 + MIR SINE MIR 28 140 -122 2336 119 0 0 chr9 101204705 101205015 -16657612 - AluSx SINE Alu -2 310 1 360 43 0 0 chr9 101205089 101205135 -16657492 + (TTCA)n Simple_repeat Simple_repeat 3 48 0 462 287 113 5 chr9 101206435 101206630 -16655997 + MIR SINE MIR 17 232 -30 203 222 93 0 chr9 101206852 101206906 -16655721 + L2 LINE L2 3176 3234 -38 22 35 0 0 chr9 101206943 101206972 -16655655 + AT_rich Low_complexity Low_complexity 1 29 0 449 243 19 0 chr9 101206972 101207075 -16655552 - MIR3 SINE MIR -36 172 68 276 284 20 20 chr9 101207144 101207246 -16655381 - MIR3 SINE MIR -39 169 68 185 303 152 18 chr9 101207926 101208091 -16654536 + L2 LINE L2 2992 3178 -94 391 273 124 19 chr9 101208205 101208366 -16654261 + MIR SINE MIR 36 213 -49 231 314 72 46 chr9 101208663 101208816 -16653811 + MIR3 SINE MIR 2 158 -50 418 282 18 0 chr9 101208829 101208939 -16653688 + MER5A DNA MER1_type 59 170 -19 551 213 41 102 chr9 101209109 101209353 -16653274 - L1MB8 LINE L1 0 6178 5950 1820 149 0 4 chr9 101209372 101209640 -16652987 - AluJo SINE Alu -45 267 1 184 284 147 0 chr9 101209683 101209778 -16652849 + MIR SINE MIR 77 185 -77 463 319 97 5 chr9 101209886 101210071 -16652556 - MIR SINE MIR -5 257 56 201 74 0 0 chr9 101210573 101210600 -16652027 + (T)n Simple_repeat Simple_repeat 1 27 0 329 179 119 0 chr9 101211072 101211156 -16651471 - MIR SINE MIR -74 134 41 381 212 9 26 chr9 101211960 101212073 -16650554 - L1MA9 LINE L1 -25 6287 6177 436 119 15 0 chr9 101212073 101212140 -16650487 + MADE1 DNA Mariner 5 72 -8 258 213 27 27 chr9 101212148 101212223 -16650404 - L1MA9 LINE L1 -172 6140 6066 707 126 0 55 chr9 101212248 101212375 -16650252 - AluJb SINE Alu -178 134 15 42 36 0 0 chr9 101212457 101212513 -16650114 + AT_rich Low_complexity Low_complexity 1 56 0 1045 126 5 68 chr9 101212580 101212802 -16649825 - MER2 DNA MER2_type -136 209 2 2229 118 0 3 chr9 101212829 101213133 -16649494 - AluSx SINE Alu -9 303 1 319 284 10 10 chr9 101213194 101213296 -16649331 - MIR SINE MIR -111 151 50 2014 168 0 0 chr9 101213300 101213610 -16649017 - AluJo SINE Alu -2 310 1 305 279 171 21 chr9 101213930 101214070 -16648557 - MIR SINE MIR -15 247 87 880 79 0 2 chr9 101214880 101215133 -16647494 + AluSx SINE Alu 1 302 -8 279 210 32 0 chr9 101215136 101215198 -16647429 - MIR SINE MIR -109 153 90 802 260 22 4 chr9 101215227 101215450 -16647177 - MIR SINE MIR -14 248 17 185 277 46 0 chr9 101215489 101215554 -16647073 - L3 LINE CR1 -191 1386 1319 283 260 87 39 chr9 101216146 101216273 -16646354 + MIR3 SINE MIR 30 162 -46 300 247 14 0 chr9 101216355 101216428 -16646199 - MIR SINE MIR -109 153 80 234 187 91 0 chr9 101216578 101216644 -16645983 - MIR SINE MIR -55 153 113 293 240 135 10 chr9 101217635 101217731 -16644896 + MIR SINE MIR 21 128 -134 266 367 14 0 chr9 101217805 101217944 -16644683 - MIR3 SINE MIR -14 194 54 * 529 265 14 20 chr9 101217942 101218089 -16644538 - MIR3 SINE MIR -29 179 34 506 251 47 37 chr9 101218695 101218886 -16643741 - L1MB8 LINE L1 -14 6164 5972 515 253 121 46 chr9 101219010 101219378 -16643249 - L1MC4a LINE L1 -340 5830 5519 282 330 121 9 chr9 101219599 101219823 -16642804 + L2 LINE L2 2851 3099 -173 366 237 69 86 chr9 101220282 101220527 -16642100 + HAL1 LINE L1 2180 2420 -87 219 154 209 0 chr9 101220772 101220838 -16641789 + MIR SINE MIR 71 153 -55 22 103 0 0 chr9 101221359 101221437 -16641190 + GC_rich Low_complexity Low_complexity 1 78 0 286 337 6 22 chr9 101221637 101221815 -16640812 + CT-rich Low_complexity Low_complexity 5 179 0 353 202 50 20 chr9 101222425 101222524 -16640103 + MIR3 SINE MIR 76 177 -31 262 314 48 0 chr9 101222641 101222746 -16639881 + MIR SINE MIR 46 155 -107 2422 103 3 0 chr9 101222752 101223063 -16639564 + AluSx SINE Alu 1 312 0 372 275 152 23 chr9 101223714 101223885 -16638742 + MIR SINE MIR 29 221 -41 245 287 123 6 chr9 101223943 101224051 -16638576 + MIR SINE MIR 37 144 -64 329 253 20 60 chr9 101224091 101224241 -16638386 - MIR3 SINE MIR -7 201 58 466 261 39 26 chr9 101224581 101224734 -16637893 + MIR SINE MIR 21 175 -87 242 284 43 17 chr9 101225026 101225142 -16637485 + MIR SINE MIR 67 185 -77 555 251 53 32 chr9 101225254 101225441 -16637186 - MIR3 SINE MIR -8 200 10 291 306 10 0 chr9 101225470 101225568 -16637059 + MIR SINE MIR 50 148 -60 202 71 0 0 chr9 101226005 101226033 -16636594 - L2 LINE L2 -2 3270 3243 364 202 55 37 chr9 101226091 101226200 -16636427 - MIR SINE MIR -61 201 91 185 286 103 40 chr9 101226224 101226399 -16636228 - L2 LINE L2 -40 3232 3047 519 261 49 0 chr9 101226603 101226745 -16635882 - MIR SINE MIR -44 218 70 741 234 78 5 chr9 101226757 101226949 -16635678 - MIR SINE MIR -10 252 47 350 290 102 45 chr9 101227805 101227981 -16634646 - L1ME4a LINE L1 -3 6118 5933 2360 105 0 0 chr9 101228306 101228601 -16634026 + AluSx SINE Alu 1 295 -17 383 281 101 23 chr9 101228915 101229093 -16633534 + MIR SINE MIR 33 223 -39 2002 131 0 0 chr9 101229810 101230078 -16632549 + AluSx SINE Alu 6 273 -39 272 297 159 28 chr9 101230095 101230240 -16632387 + MIR SINE MIR 20 183 -79 536 253 92 17 chr9 101230462 101230636 -16631991 + MIR3 SINE MIR 15 201 -7 254 306 12 12 chr9 101230795 101230880 -16631747 - MIR SINE MIR -114 148 64 1180 213 121 0 chr9 101231101 101231204 -16631423 + AluJo SINE Alu 1 90 -222 180 0 0 0 chr9 101231204 101231224 -16631403 + (TAAAA)n Simple_repeat Simple_repeat 4 23 0 1180 213 121 0 chr9 101231224 101231369 -16631258 + AluJo SINE Alu 90 279 -33 564 184 20 14 chr9 101231370 101231517 -16631110 + GA-rich Low_complexity Low_complexity 1 148 0 404 282 31 12 chr9 101231520 101231683 -16630944 + MER103 DNA DNA 1 166 0 259 274 0 0 chr9 101231846 101231919 -16630708 + MIR SINE MIR 66 138 -124 2687 228 39 8 chr9 101232875 101233486 -16629141 - L1ME3A LINE L1 -5 6165 5536 1719 163 3 7 chr9 101234038 101234333 -16628294 - AluJo SINE Alu -12 300 7 524 284 62 12 chr9 101234857 101235019 -16627608 + MIR SINE MIR 22 191 -71 248 185 185 65 chr9 101235475 101235567 -16627060 + MIR SINE MIR 30 132 -76 294 275 33 50 chr9 101235663 101235783 -16626844 + MIR SINE MIR 109 226 -36 280 120 141 33 chr9 101236036 101236128 -16626499 - L1ME4a LINE L1 0 6121 6020 1963 128 3 0 chr9 101236283 101236573 -16626054 - AluJb SINE Alu -21 291 1 394 225 174 11 chr9 101236678 101236856 -16625771 - L1ME4a LINE L1 -1990 5818 5612 1976 106 19 16 chr9 101236893 101237205 -16625422 + AluSq SINE Alu 1 313 0 789 182 93 81 chr9 101237205 101237454 -16625173 + MIR SINE MIR 21 262 0 308 182 36 0 chr9 101237524 101237579 -16625048 - L1ME4a LINE L1 -2285 5523 5467 1328 131 111 8 chr9 101237613 101237867 -16624760 - L1MD3 LINE L1 -8 7987 7613 1809 166 0 6 chr9 101237870 101238184 -16624443 - AluJo SINE Alu 0 312 1 408 296 0 26 chr9 101238738 101238853 -16623774 + MIR SINE MIR 34 145 -63 262 238 12 38 chr9 101239201 101239281 -16623346 + GA-rich Low_complexity Low_complexity 5 82 0 275 331 101 24 chr9 101239426 101239595 -16623032 + MIR SINE MIR 69 250 -12 977 111 0 15 chr9 101240898 101241033 -16621594 - FLAM_C SINE Alu 0 133 1 22 35 0 0 chr9 101241106 101241135 -16621492 + AT_rich Low_complexity Low_complexity 1 29 0 250 361 32 13 chr9 101241144 101241299 -16621328 - L2 LINE L2 -639 2675 2518 384 219 23 18 chr9 101241467 101241594 -16621033 + MIR SINE MIR 77 203 -5 2228 95 0 13 chr9 101241773 101242090 -16620537 + AluSq SINE Alu 1 313 0 220 259 17 0 chr9 101242106 101242164 -16620463 + (TAA)n Simple_repeat Simple_repeat 2 60 0 670 267 38 9 chr9 101242174 101242384 -16620243 - MIR SINE MIR -12 250 35 203 307 31 63 chr9 101242437 101242564 -16620063 + MIR3 SINE MIR 3 125 -83 2063 100 3 20 chr9 101243126 101243453 -16619174 - AluSq SINE Alu 0 313 1 2564 240 47 23 chr9 101243459 101244206 -16618421 - L1MC4a LINE L1 -1640 6168 5404 1595 150 17 17 chr9 101244243 101244536 -16618091 - AluSx SINE Alu -14 298 6 1658 174 25 74 chr9 101244552 101244782 -16617845 - L1MD3 LINE L1 0 7995 7792 1686 134 7 39 chr9 101244782 101245088 -16617539 - AluSx SINE Alu -16 296 1 1658 174 25 74 chr9 101245088 101245264 -16617363 - L1MD3 LINE L1 -203 7792 7609 241 315 39 39 chr9 101245407 101245537 -16617090 - HAL1b LINE L1 -13 1335 1206 390 159 0 0 chr9 101246136 101246205 -16616422 + (TCCA)n Simple_repeat Simple_repeat 2 70 0 326 269 108 42 chr9 101246205 101246372 -16616255 - L2 LINE L2 0 3313 3136 936 197 101 0 chr9 101246416 101246624 -16616003 + MIR SINE MIR 14 242 -20 295 306 114 19 chr9 101246703 101246998 -16615629 - L2 LINE L2 -237 3035 2685 297 302 139 0 chr9 101247176 101247305 -16615322 - MIR SINE MIR -66 196 50 517 329 59 14 chr9 101248358 101248577 -16614050 - L3 LINE CR1 -441 1136 908 2179 95 7 10 chr9 101249112 101249418 -16613209 + AluSp SINE Alu 3 307 -6 264 360 122 7 chr9 101249541 101249688 -16612939 - L3b LINE CR1 -127 1456 1293 910 194 0 52 chr9 101249703 101249894 -16612733 + MER3 DNA MER1_type 1 181 -28 516 339 48 0 chr9 101249903 101250068 -16612559 + MIR SINE MIR 9 181 -81 186 218 55 0 chr9 101250087 101250142 -16612485 + MIR SINE MIR 78 135 -73 273 239 12 0 chr9 101250873 101250943 -16611684 + MIR SINE MIR 97 147 -61 458 254 25 33 chr9 101251217 101251339 -16611288 - L2 LINE L2 0 3313 3193 417 288 48 8 chr9 101251566 101251691 -16610936 - L2 LINE L2 -4 3268 3139 2073 126 0 7 chr9 101251711 101252013 -16610614 + AluSx SINE Alu 1 300 -12 266 254 0 0 chr9 101252215 101252270 -16610357 + L2 LINE L2 3218 3272 0 585 227 141 89 chr9 101252346 101252659 -16609968 - MER102a DNA MER1_type -1 329 1 1839 166 0 7 chr9 101253192 101253499 -16609128 + AluJo SINE Alu 1 305 -7 180 0 0 0 chr9 101254120 101254140 -16608487 + (TG)n Simple_repeat Simple_repeat 2 21 0 1857 115 10 14 chr9 101254503 101254799 -16607828 + AluSx SINE Alu 1 295 -17 2158 185 51 12 chr9 101255010 101255502 -16607125 - L1MB4 LINE L1 0 6180 5670 363 337 122 15 chr9 101255519 101255715 -16606912 - LTR16B LTR ERVL -247 217 1 462 18 0 0 chr9 101256203 101256258 -16606369 + (TG)n Simple_repeat Simple_repeat 2 56 0 221 256 24 107 chr9 101256265 101256390 -16606237 - MER5B DNA MER1_type -2 176 72 220 278 21 62 chr9 101257099 101257196 -16605431 + MIR SINE MIR 72 164 -98 786 216 169 9 chr9 101257203 101257416 -16605211 + MIR SINE MIR 4 250 -12 247 305 15 30 chr9 101257489 101257620 -16605007 - MLT1L LTR MaLR 0 615 487 408 298 108 38 chr9 101257704 101258020 -16604607 - MLT1L LTR MaLR -262 353 16 324 210 74 0 chr9 101258736 101258817 -16603810 - MIR SINE MIR -57 151 70 2321 73 0 22 chr9 101259347 101259660 -16602967 + AluSx SINE Alu 1 306 -6 519 245 64 59 chr9 101259879 101260083 -16602544 + MIR SINE MIR 25 229 -33 26 30 0 0 chr9 101261533 101261566 -16601061 + AT_rich Low_complexity Low_complexity 1 33 0 2165 87 0 42 chr9 101261904 101262215 -16600412 + AluSq SINE Alu 3 300 -13 652 243 93 33 chr9 101262909 101263123 -16599504 + Charlie2 DNA MER1_type 1 227 -2635 2233 214 166 21 chr9 101263130 101263537 -16599090 + Charlie2 DNA MER1_type 1842 2189 -673 2000 112 20 10 chr9 101263537 101263831 -16598796 + AluSx SINE Alu 3 299 -13 2233 214 166 21 chr9 101263831 101264314 -16598313 + Charlie2 DNA MER1_type 2189 2861 -1 475 320 66 11 chr9 101264326 101264507 -16598120 + MIR SINE MIR 21 211 -51 284 344 179 7 chr9 101265061 101265346 -16597281 - L2 LINE L2 -338 2976 2643 1393 255 106 9 chr9 101266408 101266863 -16595764 - L1ME3A LINE L1 -266 5904 5406 329 314 83 0 chr9 101267270 101267391 -16595236 + MIR SINE MIR 23 153 -55 21 36 0 0 chr9 101267403 101267431 -16595196 + AT_rich Low_complexity Low_complexity 1 28 0 2010 131 3 0 chr9 101267432 101267737 -16594890 - AluSx SINE Alu -6 306 1 481 303 72 0 chr9 101267756 101267908 -16594719 + MER117 DNA MER1_type 31 193 -4 237 189 38 19 chr9 101267910 101267963 -16594664 + MIR3 SINE MIR 151 204 -4 229 294 0 62 chr9 101268872 101269018 -16593609 + A-rich Low_complexity Low_complexity 1 137 0 244 265 70 59 chr9 101269120 101269420 -16593207 + L1ME4a LINE L1 5814 6121 0 340 283 16 96 chr9 101269729 101269788 -16592839 + MIR SINE MIR 28 90 -164 731 218 161 0 chr9 101269788 101269981 -16592646 - MER58A DNA MER1_type 0 224 1 340 283 16 96 chr9 101269981 101270095 -16592532 + MIR SINE MIR 90 189 -65 31 26 0 0 chr9 101270895 101270933 -16591694 + AT_rich Low_complexity Low_complexity 1 38 0 231 256 23 23 chr9 101270944 101271030 -16591597 - L2 LINE L2 0 3313 3228 534 190 58 22 chr9 101271384 101271521 -16591106 + MIR SINE MIR 100 241 -21 486 255 0 0 chr9 101271608 101271706 -16590921 + AluJo SINE Alu 124 221 -91 256 339 196 0 chr9 101271841 101271953 -16590674 + L2 LINE L2 3121 3254 -18 416 370 5 10 chr9 101271995 101272187 -16590440 + MIR SINE MIR 16 206 -56 206 333 115 21 chr9 101273117 101273213 -16589414 + MIR3 SINE MIR 12 116 -92 1256 216 84 0 chr9 101273524 101273797 -16588830 + MER2 DNA MER2_type 2 297 -48 513 251 95 43 chr9 101273804 101274035 -16588592 + MER2 DNA MER2_type 103 345 0 766 239 102 31 chr9 101274036 101274262 -16588365 - MIR SINE MIR 0 262 21 1898 113 14 7 chr9 101274262 101274537 -16588090 + AluSx SINE Alu 1 277 -35 207 0 0 0 chr9 101274542 101274565 -16588062 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 25 0 0 0 chr9 101274565 101274590 -16588037 + AT_rich Low_complexity Low_complexity 1 25 0 571 325 81 83 chr9 101275121 101275579 -16587048 + L2 LINE L2 2814 3270 -2 852 199 0 33 chr9 101275823 101276004 -16586623 + FRAM SINE Alu 1 40 0 314 206 215 9 chr9 101276299 101276406 -16586221 - L1ME4a LINE L1 0 6121 5993 1737 103 107 0 chr9 101276426 101276718 -16585909 + AluSq SINE Alu 1 321 0 1073 52 0 0 chr9 101276718 101276853 -16585774 + AluSg/x SINE Alu 163 297 -13 681 249 149 27 chr9 101277018 101277239 -16585388 - MIR SINE MIR 0 262 15 305 313 42 0 chr9 101277675 101277771 -16584856 - MIR SINE MIR -12 250 151 433 363 69 0 chr9 101277820 101277980 -16584647 - L2 LINE L2 0 3272 3102 2086 129 7 0 chr9 101278149 101278459 -16584168 + AluSx SINE Alu 1 312 0 397 294 68 0 chr9 101278567 101278713 -16583914 - L1ME4a LINE L1 -312 5809 5654 42 30 0 15 chr9 101278860 101278888 -16583739 + AT_rich Low_complexity Low_complexity 1 28 -38 1923 138 7 0 chr9 101278888 101279186 -16583441 - AluSx SINE Alu -12 300 1 42 30 0 15 chr9 101279186 101279224 -16583403 + AT_rich Low_complexity Low_complexity 28 66 0 1579 216 123 84 chr9 101279292 101279469 -16583158 - HAL1 LINE L1 -1 2506 2337 866 112 8 30 chr9 101279469 101279603 -16583024 + FLAM_C SINE Alu 2 132 -1 1579 216 123 84 chr9 101279603 101279624 -16583003 - HAL1 LINE L1 -170 2337 2318 1491 145 72 35 chr9 101279624 101279914 -16582713 + AluJo SINE Alu 2 302 -10 1579 216 123 84 chr9 101279914 101280487 -16582140 - HAL1 LINE L1 -189 2318 1704 628 243 124 20 chr9 101281010 101281212 -16581415 - MIR SINE MIR -18 244 22 364 211 147 21 chr9 101281525 101281620 -16581007 + L2 LINE L2 3190 3296 -17 25 0 0 0 chr9 101281732 101281757 -16580870 + AT_rich Low_complexity Low_complexity 1 25 0 27 49 0 0 chr9 101281773 101281814 -16580813 + AT_rich Low_complexity Low_complexity 1 41 0 262 321 162 16 chr9 101281850 101282005 -16580622 + MIR SINE MIR 33 206 -56 2358 75 0 0 chr9 101282831 101283137 -16579490 - AluY SINE Alu -5 306 1 1556 130 14 0 chr9 101283228 101283443 -16579184 - MER1B DNA MER1_type 0 339 122 197 274 75 57 chr9 101284082 101284188 -16578439 - MIR SINE MIR -2 260 153 1144 214 95 3 chr9 101284887 101285182 -16577445 - MER58B DNA MER1_type -3 338 17 214 266 7 65 chr9 101285473 101285612 -16577015 + GA-rich Low_complexity Low_complexity 4 134 0 680 222 94 11 chr9 101286366 101286546 -16576081 + MIR SINE MIR 63 257 -5 411 285 108 0 chr9 101287148 101287278 -16575349 + MIR SINE MIR 119 262 0 228 239 177 102 chr9 101288159 101288258 -16574369 - L2 LINE L2 -5 3308 3218 1703 149 65 0 chr9 101288258 101288533 -16574094 + AluJo SINE Alu 1 293 -19 228 239 177 102 chr9 101288533 101288659 -16573968 - L2 LINE L2 -95 3218 3066 370 285 39 8 chr9 101289403 101289533 -16573094 + MIR SINE MIR 114 247 -15 381 270 58 15 chr9 101289969 101290106 -16572521 + MIR SINE MIR 75 217 -45 2179 84 31 0 chr9 101290112 101290398 -16572229 + AluSq SINE Alu 5 299 -14 2181 75 58 0 chr9 101292318 101292610 -16570017 + AluSx SINE Alu 1 309 -3 1694 130 32 0 chr9 101292612 101292889 -16569738 - MER49 LTR ERV1 -33 890 605 909 184 0 17 chr9 101292894 101293068 -16569559 + AluJo SINE Alu 88 258 -54 3534 129 14 12 chr9 101293092 101293675 -16568952 - MER49 LTR ERV1 -312 611 28 271 261 165 112 chr9 101293675 101293997 -16568630 - L2 LINE L2 -2 3270 2932 623 204 41 0 chr9 101294129 101294276 -16568351 - L1MD2 LINE L1 -12 6347 6195 383 120 98 43 chr9 101294278 101294370 -16568257 - L1MD2 LINE L1 -220 6139 6043 2225 119 3 3 chr9 101295437 101295747 -16566880 + AluSx SINE Alu 1 310 -2 2170 104 0 0 chr9 101295951 101296231 -16566396 - AluY SINE Alu -31 280 1 612 219 0 8 chr9 101296897 101297016 -16565611 - L2 LINE L2 -6 3307 3190 1978 147 16 95 chr9 101297029 101297452 -16565175 - MLT1B LTR MaLR 0 390 1 629 209 20 25 chr9 101297618 101297819 -16564808 - L1MA4 LINE L1 -5 6295 6096 183 213 106 0 chr9 101298132 101298179 -16564448 - MIR SINE MIR -130 132 81 1059 209 29 16 chr9 101298950 101300142 -16562485 + L1MC/D LINE L1 3444 4734 -1610 2455 69 0 0 chr9 101300142 101300447 -16562180 - AluY SINE Alu -6 305 1 1059 209 29 16 chr9 101300447 101301290 -16561337 + L1MC/D LINE L1 4734 5564 -780 269 89 22 0 chr9 101301304 101301349 -16561278 + Ricksha DNA DNA 9 54 -1127 * 660 164 42 32 chr9 101301348 101301586 -16561041 + Ricksha DNA DNA 3057 3254 -13 238 133 22 0 chr9 101301586 101301631 -16560996 + L1MC/D LINE L1 5560 5605 -637 4050 152 36 22 chr9 101301633 101301905 -16560722 + L1MC1 LINE L1 5560 5827 -506 2125 135 3 3 chr9 101301905 101302217 -16560410 + AluJb SINE Alu 1 312 0 4050 152 36 22 chr9 101302217 101302614 -16560013 + L1MC1 LINE L1 5827 6243 -90 330 87 0 0 chr9 101302614 101302660 -16559967 + (TG)n Simple_repeat Simple_repeat 1 46 0 4050 152 36 22 chr9 101302660 101302748 -16559879 + L1MC1 LINE L1 6243 6328 -5 2194 117 0 16 chr9 101303175 101303491 -16559136 + AluSx SINE Alu 1 311 -1 413 327 53 0 chr9 101303763 101303913 -16558714 - MIR SINE MIR -24 238 81 631 268 170 5 chr9 101303918 101304142 -16558485 + MIR SINE MIR 2 262 0 886 303 90 16 chr9 101304352 101304731 -16557896 - MLT1I LTR MaLR -2 407 1 2117 84 0 7 chr9 101304733 101305039 -16557588 + AluY SINE Alu 1 304 0 206 318 53 60 chr9 101305157 101305308 -16557319 - MER5A DNA MER1_type -1 188 39 * 313 370 7 15 chr9 101305180 101305315 -16557312 + MER5B DNA MER1_type 25 158 -20 401 211 24 56 chr9 101305715 101305919 -16556708 - L1MC4 LINE L1 -724 7237 7036 1338 193 0 0 chr9 101306123 101306361 -16556266 - AluSg1 SINE Alu -71 238 1 1978 135 42 0 chr9 101306832 101307120 -16555507 + AluSx SINE Alu 1 300 -12 5041 132 57 24 chr9 101307668 101308542 -16554085 - MER4D LTR ERV1 0 903 1 370 173 100 7 chr9 101308547 101308697 -16553930 - Zaphod DNA AcHobo -3212 819 656 1359 211 13 30 chr9 101308795 101308890 -16553737 + AluJo SINE Alu 1 96 -216 4253 93 14 26 chr9 101308890 101309171 -16553456 - MER41B LTR ERV1 0 635 352 2335 113 0 0 chr9 101309171 101309480 -16553147 - AluSg SINE Alu -1 309 1 4253 93 14 26 chr9 101309480 101309841 -16552786 - MER41B LTR ERV1 -283 352 1 1359 211 13 30 chr9 101309841 101310049 -16552578 + AluJo SINE Alu 96 299 -13 1615 253 85 40 chr9 101310054 101310394 -16552233 - Zaphod DNA AcHobo -3428 603 225 2278 105 26 0 chr9 101310394 101310698 -16551929 - AluSx SINE Alu 0 312 1 1615 253 85 40 chr9 101310698 101310934 -16551693 - Zaphod DNA AcHobo -3806 225 1 1662 208 10 13 chr9 101311008 101311321 -16551306 - AluJb SINE Alu 0 312 1 2742 156 40 16 chr9 101311437 101311990 -16550637 - L1MD1 LINE L1 -1 7982 6088 336 206 0 0 chr9 101311999 101312067 -16550560 - MLT1F1 LTR MaLR -436 131 64 636 212 229 14 chr9 101312082 101312370 -16550257 - HAL1 LINE L1 -2155 352 3 2282 99 0 3 chr9 101312384 101312678 -16549949 - AluSx SINE Alu -19 293 1 297 330 22 28 chr9 101312679 101312858 -16549769 + ERVL LTR ERVL 4374 4551 -1213 437 282 52 6 chr9 101313008 101313182 -16549445 + ERVL LTR ERVL 5185 5366 -288 426 210 215 43 chr9 101313398 101313631 -16548996 - L1MC4a LINE L1 -1907 5901 5629 855 265 145 40 chr9 101313705 101314161 -16548466 - LTR33A LTR ERVL -16 507 4 391 325 7 0 chr9 101314487 101314638 -16547989 - ERVL LTR ERVL -368 5396 5245 616 191 167 91 chr9 101314639 101314993 -16547634 - LTR50 LTR ERVL 0 795 333 479 207 66 0 chr9 101315051 101315172 -16547455 - LTR50 LTR ERVL -666 129 1 2052 151 0 0 chr9 101315304 101315615 -16547012 + AluSx SINE Alu 1 311 -1 825 277 126 33 chr9 101315782 101316266 -16546361 - ERVL LTR ERVL -291 5473 4945 2836 303 57 6 chr9 101316325 101317360 -16545267 - ERVL LTR ERVL -937 4827 3740 32 0 0 0 chr9 101317407 101317439 -16545188 + AT_rich Low_complexity Low_complexity 1 32 0 5196 115 29 82 chr9 101317441 101317917 -16544710 - L1MA5A LINE L1 -5 6292 5792 241 158 18 0 chr9 101317917 101317974 -16544653 + LTR66 LTR ERVL 382 439 -171 5196 115 29 82 chr9 101317974 101318924 -16543703 - L1MA5A LINE L1 -505 5792 4931 1616 167 7 44 chr9 101318924 101319258 -16543369 - AluJo SINE Alu 0 323 1 5196 115 29 82 chr9 101319258 101319582 -16543045 - L1MA5A LINE L1 -1366 4931 4591 773 295 88 32 chr9 101319583 101320197 -16542430 - ERVL LTR ERVL -2012 3642 2973 601 217 0 50 chr9 101321073 101321193 -16541434 + MER81 DNA DNA 1 114 0 303 93 0 0 chr9 101321872 101321915 -16540712 + (TTCA)n Simple_repeat Simple_repeat 1 43 0 393 238 25 57 chr9 101321919 101322041 -16540586 - L2 LINE L2 -13 3300 3183 712 273 28 35 chr9 101322046 101322475 -16540152 - L1M4 LINE L1 -1194 4952 4527 575 285 128 22 chr9 101322513 101323053 -16539574 - L1M4 LINE L1 -1693 4453 3857 * 8022 175 17 13 chr9 101323050 101324941 -16537686 + L1P4 LINE L1 3565 5469 -697 1540 116 132 4 chr9 101324941 101325221 -16537406 - AluSg1 SINE Alu 0 312 1 8022 175 17 13 chr9 101325221 101325335 -16537292 + L1P4 LINE L1 5469 5581 -585 1065 186 36 85 chr9 101325336 101325541 -16537086 - L1M4 LINE L1 -855 5291 5110 642 244 69 6 chr9 101325541 101325701 -16536926 + FAM SINE Alu 1 170 -5 1065 186 36 85 chr9 101325701 101325860 -16536767 - L1M4 LINE L1 -1036 5110 4945 282 254 76 30 chr9 101325870 101326106 -16536521 - L1M4 LINE L1 -2701 3445 3199 1917 169 0 13 chr9 101326189 101326491 -16536136 - AluJo SINE Alu -14 298 1 656 208 131 54 chr9 101326556 101326816 -16535811 - L2 LINE L2 0 3313 3034 2402 192 141 55 chr9 101326823 101327054 -16535573 - L1MD2 LINE L1 -1 6358 6148 2137 113 7 3 chr9 101327054 101327346 -16535281 + AluSx SINE Alu 1 293 -19 2402 192 141 55 chr9 101327346 101327946 -16534681 - L1MD2 LINE L1 -211 6148 5456 354 279 56 6 chr9 101327960 101328139 -16534488 + L1M4 LINE L1 3802 3989 -2157 237 108 0 0 chr9 101328156 101328193 -16534434 + (A)n Simple_repeat Simple_repeat 1 37 0 1034 107 9 37 chr9 101328213 101328428 -16534199 + L1MDa LINE L1 2325 2533 -4007 248 193 169 48 chr9 101328978 101329061 -16533566 + MER58 DNA MER1_type 2 94 -121 2248 141 27 29 chr9 101329062 101329509 -16533118 - L1MC3 LINE L1 -18 7767 7322 1665 184 60 23 chr9 101329525 101329911 -16532716 - MLT1C LTR MaLR -16 451 52 452 127 0 0 chr9 101329912 101329983 -16532644 + MER4A-int LTR ERV1 6526 6596 -2 3840 84 4 109 chr9 101329993 101330696 -16531931 + MER4A LTR ERV1 3 631 -33 234 170 21 0 chr9 101330706 101330753 -16531874 - MLT1C LTR MaLR -419 48 1 6624 146 48 59 chr9 101330753 101332187 -16530440 - L1MC3 LINE L1 -459 7326 5908 2050 171 118 54 chr9 101332192 101332613 -16530014 + MLT2B2 LTR ERVL 1 394 -121 216 0 0 0 chr9 101332613 101332637 -16529990 + (CA)n Simple_repeat Simple_repeat 2 25 0 1503 193 75 3 chr9 101332641 101332962 -16529665 + MER2 DNA MER2_type 1 344 0 2050 171 118 54 chr9 101332962 101333019 -16529608 + MLT2B2 LTR ERVL 396 515 0 511 278 28 11 chr9 101333021 101333197 -16529430 - L1MDb LINE L1 -5550 859 681 247 253 50 50 chr9 101333260 101333359 -16529268 - L1MDb LINE L1 -5645 764 666 1509 230 93 54 chr9 101333529 101334025 -16528602 - MLT1E LTR MaLR -78 515 1 870 83 0 0 chr9 101334180 101334300 -16528327 + (TTTC)n Simple_repeat Simple_repeat 1 120 0 535 134 17 0 chr9 101334303 101334422 -16528205 + CT-rich Low_complexity Low_complexity 1 121 0 1913 123 0 4 chr9 101334425 101334685 -16527942 - AluSx SINE Alu -39 273 15 1906 152 0 17 chr9 101334685 101334987 -16527640 - AluJo SINE Alu -15 297 1 1930 155 0 0 chr9 101335213 101335497 -16527130 - AluJb SINE Alu -28 284 1 198 0 0 0 chr9 101335811 101335833 -16526794 + (TA)n Simple_repeat Simple_repeat 2 23 0 245 230 58 23 chr9 101335895 101335982 -16526645 - L1MC4 LINE L1 -1339 6703 6614 * 248 237 0 54 chr9 101335905 101335998 -16526629 + L1MC4 LINE L1 6614 6701 -1341 24 0 0 0 chr9 101336106 101336130 -16526497 + AT_rich Low_complexity Low_complexity 1 24 0 20137 37 1 2 chr9 101336550 101339640 -16522987 - L1PA3 LINE L1 -3 6152 3066 497 284 62 12 chr9 101340640 101340802 -16521825 + MIR SINE MIR 22 191 -71 227 209 173 55 chr9 101341243 101341353 -16521274 + MIR3 SINE MIR 10 132 -76 222 227 76 101 chr9 101341449 101341568 -16521059 + MIR SINE MIR 109 224 -38 310 120 141 33 chr9 101341825 101341917 -16520710 - L1ME4a LINE L1 0 6121 6020 1870 138 0 20 chr9 101342072 101342369 -16520258 - AluJb SINE Alu -21 291 1 359 251 155 17 chr9 101342393 101342655 -16519972 - L1ME4a LINE L1 -208 5913 5612 2136 103 19 13 chr9 101342693 101343004 -16519623 + AluSq SINE Alu 1 313 0 752 187 93 81 chr9 101343004 101343254 -16519373 + MIR SINE MIR 21 262 0 313 182 36 0 chr9 101343324 101343379 -16519248 - L1ME4a LINE L1 -2285 5523 5467 1366 131 111 8 chr9 101343413 101343667 -16518960 - L1MD3 LINE L1 -8 7987 7613 1792 160 0 19 chr9 101343670 101343988 -16518639 - AluJo SINE Alu 0 312 1 419 278 0 26 chr9 101344548 101344663 -16517964 + MIR SINE MIR 34 145 -63 262 238 12 38 chr9 101345018 101345098 -16517529 + GA-rich Low_complexity Low_complexity 5 82 0 265 343 101 24 chr9 101345244 101345413 -16517214 + MIR SINE MIR 69 250 -12 1057 96 0 15 chr9 101347072 101347207 -16515420 - FLAM_C SINE Alu 0 133 1 22 35 0 0 chr9 101347280 101347309 -16515318 + AT_rich Low_complexity Low_complexity 1 29 0 247 355 32 13 chr9 101347318 101347473 -16515154 - L2 LINE L2 -639 2675 2518 379 176 15 0 chr9 101347642 101347710 -16514917 + MIR SINE MIR 77 145 -117 2386 103 0 0 chr9 101347948 101348260 -16514367 + AluSq SINE Alu 1 312 -1 204 276 17 0 chr9 101348279 101348337 -16514290 + (TAA)n Simple_repeat Simple_repeat 2 60 0 615 271 38 9 chr9 101348347 101348557 -16514070 - MIR SINE MIR -12 250 35 193 307 31 63 chr9 101348610 101348737 -16513890 + MIR3 SINE MIR 3 125 -83 346 97 27 89 chr9 101349298 101349456 -16513171 - AluSp/q SINE Alu 0 303 220 2161 100 0 3 chr9 101349686 101349976 -16512651 - L1MC/D LINE L1 -607 5726 5438 2380 107 0 0 chr9 101350022 101350330 -16512297 + AluSg SINE Alu 2 309 -1 26195 34 2 0 chr9 101350855 101353983 -16508644 - L1P LINE L1 -1858 4288 1156 16540 133 16 18 chr9 101353974 101354091 -16508536 - L1M1 LINE L1 -4045 3520 3404 * 210 71 0 0 chr9 101354091 101354119 -16508508 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1829 103 0 0 chr9 101354119 101354351 -16508276 - AluSx SINE Alu -45 267 36 16540 133 16 18 chr9 101354351 101354877 -16507750 - L1M1 LINE L1 -4160 3405 2880 2194 117 13 0 chr9 101354877 101355185 -16507442 - AluSx SINE Alu 0 312 1 16540 133 16 18 chr9 101355185 101357151 -16505476 - L1M1 LINE L1 -4685 2880 914 2580 203 43 2 chr9 101357159 101357695 -16504932 + L1ME1 LINE L1 5410 5967 -199 237 293 76 89 chr9 101357741 101357898 -16504729 + LTR67 LTR ERVL 2 156 -401 546 275 62 36 chr9 101358327 101358520 -16504107 + MLT1I LTR MaLR 170 367 -42 4330 217 24 15 chr9 101358732 101359339 -16503288 + L1MA4 LINE L1 14 633 -4695 2770 143 21 21 chr9 101359339 101359771 -16502856 - MSTB1 LTR MaLR 0 432 1 4330 217 24 15 chr9 101359771 101360080 -16502547 + L1MA4 LINE L1 633 938 -4390 * 6238 165 84 35 chr9 101360055 101362485 -16500142 + L1MA4 LINE L1 3732 6477 -5 1357 162 192 43 chr9 101362605 101362975 -16499652 + MSTC LTR MaLR 1 425 -3 8197 55 1 2 chr9 101363004 101363967 -16498660 + LTR5 LTR ERVK 5 966 -3 320 257 0 0 chr9 101364002 101364076 -16498551 - MIR SINE MIR 0 262 189 515 198 216 6 chr9 101364219 101364381 -16498246 + LTR33A LTR ERVL 328 523 0 411 207 63 75 chr9 101364406 101364580 -16498047 - MLT1H LTR MaLR -2 547 376 302 290 69 0 chr9 101365214 101365343 -16497284 + ERVL LTR ERVL 537 687 -4979 661 283 79 73 chr9 101365433 101365942 -16496685 + ERVL LTR ERVL 886 1397 -4367 491 312 25 0 chr9 101365981 101366138 -16496489 + ERVL LTR ERVL 1700 1860 -3904 1862 315 82 14 chr9 101366184 101367282 -16495345 + ERVL LTR ERVL 1987 3133 -2352 357 252 48 10 chr9 101367390 101367493 -16495134 + ERVL LTR ERVL 3422 3528 -2236 * 1870 299 69 29 chr9 101367492 101368928 -16493699 + ERVL LTR ERVL 3894 5478 -286 746 248 83 87 chr9 101368954 101369401 -16493226 + MER65A LTR ERV1 1 445 0 521 289 75 36 chr9 101369869 101370122 -16492505 + LTR33A LTR ERVL 255 517 -6 7151 54 4 0 chr9 101370143 101371466 -16491161 + L1PA6 LINE L1 4840 6166 0 1666 221 29 5 chr9 101371477 101371861 -16490766 + L1P LINE L1 4964 5356 -790 383 282 75 31 chr9 101371892 101372129 -16490498 - L1ME2 LINE L1 0 6164 5905 180 0 0 0 chr9 101372134 101372154 -16490473 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2110 175 46 2 chr9 101372164 101372575 -16490052 - L1 LINE L1 -1511 4635 4207 234 230 43 72 chr9 101372578 101372717 -16489910 + L1MDa LINE L1 1570 1704 -4836 816 208 40 29 chr9 101372727 101372900 -16489727 + MER5B DNA MER1_type 1 175 -3 858 205 31 113 chr9 101373829 101374058 -16488569 + MER63A DNA MER1_type 1 210 0 300 167 0 0 chr9 101374529 101374577 -16488050 - MER20 DNA MER1_type -11 208 161 2142 109 0 28 chr9 101374583 101374904 -16487723 - AluSx SINE Alu 0 312 1 1211 157 4 61 chr9 101374906 101375136 -16487491 - AluJo SINE Alu -10 302 86 589 157 14 95 chr9 101375136 101375283 -16487344 - MER20 DNA MER1_type -84 135 1 261 301 65 24 chr9 101375558 101375681 -16486946 - L2 LINE L2 0 3313 3186 532 280 19 34 chr9 101375694 101375901 -16486726 - MLT1K LTR MaLR -16 572 369 300 343 69 0 chr9 101375934 101376036 -16486591 - MLT1K LTR MaLR -308 280 172 234 0 0 0 chr9 101376609 101376635 -16485992 + (TG)n Simple_repeat Simple_repeat 2 27 0 1832 159 17 3 chr9 101377217 101377506 -16485121 - AluJb SINE Alu -19 293 1 577 146 29 48 chr9 101377883 101377986 -16484641 + FRAM SINE Alu 61 161 -15 183 222 0 0 chr9 101378068 101378104 -16484523 + MIR SINE MIR 110 145 -63 1867 131 30 34 chr9 101378435 101378733 -16483894 + AluJb SINE Alu 1 297 -15 21 36 0 0 chr9 101382509 101382537 -16480090 + AT_rich Low_complexity Low_complexity 1 28 0 5857 123 33 10 chr9 101382541 101383412 -16479215 - L1MC1 LINE L1 -5 6328 5438 2380 107 0 0 chr9 101383458 101383766 -16478861 + AluSg SINE Alu 2 309 -1 2189 104 44 0 chr9 101385084 101385382 -16477245 - AluY SINE Alu 0 311 1 2272 122 3 0 chr9 101386405 101386716 -16475911 - AluSx SINE Alu 0 312 1 327 319 148 0 chr9 101388152 101388287 -16474340 - MIR SINE MIR -32 230 76 710 261 145 5 chr9 101388300 101388507 -16474120 - MIR SINE MIR -6 256 21 2357 108 0 3 chr9 101388627 101388941 -16473686 + AluSq SINE Alu 1 313 0 456 300 42 0 chr9 101389315 101389435 -16473192 - MIR SINE MIR -11 251 127 269 299 82 10 chr9 101389525 101389622 -16473005 - L2 LINE L2 -17 3255 3152 22 56 0 0 chr9 101389758 101389794 -16472833 + AT_rich Low_complexity Low_complexity 1 36 0 25 0 0 0 chr9 101390249 101390274 -16472353 + AT_rich Low_complexity Low_complexity 1 25 0 2212 102 10 0 chr9 101390318 101390612 -16472015 - AluSp SINE Alu -16 297 1 1313 159 5 5 chr9 101390669 101390864 -16471763 - AluJo SINE Alu -113 199 5 554 304 177 27 chr9 101390925 101391297 -16471330 - L2 LINE L2 -705 2609 2182 2007 133 0 0 chr9 101391315 101391663 -16470964 + AluSc SINE Alu 1 348 0 1729 148 71 20 chr9 101392143 101392440 -16470187 + AluJb SINE Alu 1 312 0 236 273 122 44 chr9 101392464 101392735 -16469892 + L2 LINE L2 2224 2515 -799 280 229 0 29 chr9 101392863 101392933 -16469694 + MER112 DNA MER1_type 17 84 -176 2313 105 10 0 chr9 101393533 101393838 -16468789 + AluSq SINE Alu 1 308 -5 1084 134 17 39 chr9 101393873 101394052 -16468575 + AluJo SINE Alu 118 292 -20 406 303 23 63 chr9 101394567 101394742 -16467885 + MIR SINE MIR 45 212 -50 2179 124 0 9 chr9 101395009 101395324 -16467303 + AluSx SINE Alu 1 312 0 183 364 40 0 chr9 101395609 101395708 -16466919 - MIR SINE MIR -113 149 47 215 200 18 18 chr9 101396172 101396227 -16466400 - L2 LINE L2 -625 2689 2635 808 156 8 0 chr9 101396528 101396656 -16465971 - AluJb SINE Alu -183 129 1 185 283 57 0 chr9 101397127 101397180 -16465447 + L2 LINE L2 2998 3053 -219 377 127 18 0 chr9 101397186 101397241 -16465386 + L2 LINE L2 3255 3310 -3 2134 122 0 0 chr9 101397292 101397571 -16465056 - AluSx SINE Alu -10 302 24 267 0 70 0 chr9 101397575 101397618 -16465009 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 201 108 0 0 chr9 101397956 101397993 -16464634 + (A)n Simple_repeat Simple_repeat 1 37 0 1349 208 101 21 chr9 101398400 101398736 -16463891 + MLT1A2 LTR MaLR 1 363 -11 706 175 21 129 chr9 101398767 101398892 -16463735 - MIR SINE MIR -1 261 163 1886 163 0 14 chr9 101398892 101399187 -16463440 - AluJo SINE Alu -21 291 1 706 175 21 129 chr9 101399187 101399255 -16463372 - MIR SINE MIR -99 163 89 641 311 102 16 chr9 101399336 101399590 -16463037 - L3 LINE CR1 -344 1233 958 2376 113 0 3 chr9 101399638 101399948 -16462679 + AluSx SINE Alu 1 309 -3 208 322 50 25 chr9 101399970 101400091 -16462536 - L3 LINE CR1 -632 945 822 183 42 0 0 chr9 101400285 101400309 -16462318 + (CA)n Simple_repeat Simple_repeat 2 25 0 5020 50 8 7 chr9 101400988 101401602 -16461025 - L1PA7 LINE L1 0 6154 5540 193 333 58 70 chr9 101402142 101402313 -16460314 - L2 LINE L2 -212 3060 2892 1355 229 51 63 chr9 101402595 101403085 -16459542 + MER74B LTR ERVL 65 548 -74 307 244 23 12 chr9 101403011 101403097 -16459530 - MER88 LTR ERVL -299 165 79 * 792 299 71 25 chr9 101403147 101403542 -16459085 - L2 LINE L2 -715 2599 2187 1163 187 99 18 chr9 101403544 101403828 -16458799 + LTR8A LTR ERV1 1 307 -420 1136 73 0 7 chr9 101403825 101403975 -16458652 + LTR8 LTR ERV1 543 691 0 * 244 263 206 38 chr9 101403975 101404135 -16458492 - L2 LINE L2 -1126 2188 2002 446 290 83 51 chr9 101404181 101404398 -16458229 + L2 LINE L2 3048 3271 -1 906 195 202 8 chr9 101405022 101405279 -16457348 + MER46C DNA MER2_type 31 337 -1 194 175 316 0 chr9 101405420 101405477 -16457150 + MIR SINE MIR 170 244 -18 * 224 226 57 0 chr9 101405444 101405497 -16457130 + L2 LINE L2 3216 3271 -1 2220 104 0 0 chr9 101406026 101406306 -16456321 + AluSx SINE Alu 22 301 -11 1862 152 40 3 chr9 101406611 101407026 -16455601 + AluJb SINE Alu 1 426 0 4226 86 11 0 chr9 101407950 101408498 -16454129 + MER41A LTR ERV1 1 554 0 286 278 200 0 chr9 101408564 101408744 -16453883 - L2 LINE L2 -4 3309 3094 538 326 149 21 chr9 101410476 101410627 -16452000 + L2 LINE L2 2948 3078 -194 2189 130 10 0 chr9 101410627 101410935 -16451692 - AluSx SINE Alu -1 311 1 538 326 149 21 chr9 101410935 101411071 -16451556 + L2 LINE L2 3078 3272 0 2290 75 3 3 chr9 101411483 101411800 -16450827 - AluSp SINE Alu 0 319 3 335 209 47 12 chr9 101412474 101412560 -16450067 + MER69A DNA AcHobo 1 89 -88 1354 211 60 74 chr9 101412964 101413339 -16449288 + MER69 DNA AcHobo 2085 2455 -71 2423 79 0 13 chr9 101413339 101413644 -16448983 - AluY SINE Alu -10 301 1 1354 211 60 74 chr9 101413644 101413714 -16448913 + MER69 DNA AcHobo 2455 2524 -2 884 252 18 9 chr9 101413730 101413948 -16448679 - MIR SINE MIR -35 227 8 205 347 31 0 chr9 101414095 101414196 -16448431 - MIR SINE MIR -67 141 85 183 42 0 0 chr9 101415465 101415489 -16447138 + (CA)n Simple_repeat Simple_repeat 2 25 0 2500 74 0 10 chr9 101415809 101416119 -16446508 - AluSc SINE Alu 0 309 3 213 279 54 81 chr9 101416407 101416518 -16446109 - L3b LINE CR1 -133 1450 1343 256 299 34 26 chr9 101416518 101416635 -16445992 + L1ME4a LINE L1 5587 5704 -466 2219 82 0 0 chr9 101416762 101417041 -16445586 + AluY SINE Alu 27 305 -6 767 241 53 13 chr9 101417041 101417269 -16445358 + L1ME4a LINE L1 5713 5949 -221 2292 105 20 0 chr9 101417269 101417575 -16445052 + AluSx SINE Alu 1 312 0 2256 95 3 0 chr9 101417579 101417862 -16444765 + AluSx SINE Alu 1 284 -28 3079 131 86 11 chr9 101417871 101418412 -16444215 + L1PBa LINE L1 2876 3452 -4113 1846 146 7 0 chr9 101418412 101418644 -16443983 + AluSx SINE Alu 36 272 -40 210 71 0 0 chr9 101418644 101418672 -16443955 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1846 146 7 0 chr9 101418672 101418714 -16443913 + AluSx SINE Alu 272 312 0 3079 131 86 11 chr9 101418714 101418789 -16443838 + L1PBa LINE L1 3452 3520 -4045 * 34053 30 1 1 chr9 101418780 101423520 -16439107 + L1PA3 LINE L1 1156 5894 -261 1797 187 3 0 chr9 101423749 101424048 -16438579 + AluJb SINE Alu 1 300 -12 2258 116 3 10 chr9 101424050 101424353 -16438274 + AluSq SINE Alu 1 301 -12 1167 128 6 28 chr9 101424357 101424536 -16438091 + AluSg/x SINE Alu 128 302 -8 233 306 25 33 chr9 101424705 101424826 -16437801 - MIR SINE MIR -66 196 77 269 254 0 0 chr9 101425538 101425601 -16437026 + MIR SINE MIR 120 182 -80 839 100 0 39 chr9 101425643 101425773 -16436854 + L1PB4 LINE L1 6030 6154 -2 317 86 0 0 chr9 101425773 101425825 -16436802 + L1MB3 LINE L1 6126 6183 0 358 21 0 0 chr9 101425925 101425972 -16436655 - AluSq SINE Alu -4 297 251 1346 72 0 0 chr9 101425973 101426126 -16436501 - AluSq SINE Alu -139 174 22 278 207 0 0 chr9 101426137 101426195 -16436432 + L1ME4a LINE L1 6063 6120 -1 193 208 0 62 chr9 101427310 101427358 -16435269 - MIR SINE MIR -62 146 102 256 324 48 9 chr9 101427548 101427653 -16434974 + MIR3 SINE MIR 87 195 -13 262 273 148 0 chr9 101427993 101428121 -16434506 + MIR3 SINE MIR 9 155 -53 407 294 140 33 chr9 101428176 101428390 -16434237 + MIR SINE MIR 14 250 -12 2491 73 7 0 chr9 101428866 101429167 -16433460 + AluSg SINE Alu 1 303 -7 2318 105 0 0 chr9 101429289 101429585 -16433042 - AluSx SINE Alu -16 296 1 321 89 0 0 chr9 101429667 101429712 -16432915 + (TG)n Simple_repeat Simple_repeat 2 46 0 760 179 16 0 chr9 101429718 101429841 -16432786 - FAM SINE Alu -18 167 43 356 239 0 34 chr9 101429882 101429970 -16432657 - L2 LINE L2 -1 3312 3228 2219 90 7 17 chr9 101430001 101430300 -16432327 + AluSq SINE Alu 1 296 -17 2140 112 42 0 chr9 101430403 101430690 -16431937 + AluSx SINE Alu 1 299 -13 333 261 44 59 chr9 101430899 101431065 -16431562 + MIR SINE MIR 40 202 -60 23 0 0 0 chr9 101431108 101431131 -16431496 + AT_rich Low_complexity Low_complexity 1 23 0 2385 117 0 0 chr9 101431288 101431596 -16431031 - AluSx SINE Alu -4 308 1 2089 173 0 12 chr9 101432058 101432382 -16430245 + 7SLRNA srpRNA srpRNA 1 320 0 2154 120 20 3 chr9 101432459 101432759 -16429868 - AluSx SINE Alu -7 305 1 833 280 28 0 chr9 101432759 101432977 -16429650 - MIR SINE MIR -36 226 3 2352 98 0 3 chr9 101433206 101433503 -16429124 + AluSq SINE Alu 1 296 -17 286 290 103 47 chr9 101433503 101433717 -16428910 + L2 LINE L2 1786 2011 -1303 349 287 165 18 chr9 101433778 101433942 -16428685 - L2 LINE L2 -946 2368 2181 289 253 40 10 chr9 101434107 101434206 -16428421 - MLT1I LTR MaLR 0 409 308 2379 93 3 13 chr9 101434391 101434701 -16427926 + AluSg SINE Alu 1 307 -3 569 165 43 35 chr9 101434701 101434816 -16427811 + AluSg/x SINE Alu 182 297 -12 2161 128 7 0 chr9 101434855 101435153 -16427474 + AluSx SINE Alu 3 302 -10 396 260 89 8 chr9 101435364 101435487 -16427140 + MIR SINE MIR 12 144 -118 228 301 150 8 chr9 101436360 101436493 -16426134 - MIR3 SINE MIR -21 187 36 183 162 0 0 chr9 101436725 101436762 -16425865 + T-rich Low_complexity Low_complexity 1 37 0 1296 109 0 0 chr9 101438504 101438688 -16423939 + AluJo SINE Alu 1 184 -128 3622 128 13 18 chr9 101438696 101438746 -16423881 + MER51-int LTR ERV1 1092 1141 -1127 2050 134 0 3 chr9 101438746 101439059 -16423568 + AluSx SINE Alu 1 312 0 3622 128 13 18 chr9 101439059 101439687 -16422940 + MER51-int LTR ERV1 1141 1719 -549 593 170 0 0 chr9 101439688 101439782 -16422845 + AluS SINE Alu 2 95 -218 632 171 0 0 chr9 101440243 101440348 -16422279 - AluY SINE Alu -197 114 10 836 162 61 91 chr9 101440348 101440461 -16422166 + MER51-int LTR ERV1 3089 3195 -4621 2171 97 3 3 chr9 101440461 101440759 -16421868 - AluSg SINE Alu -6 304 7 836 162 61 91 chr9 101440759 101440842 -16421785 + MER51-int LTR ERV1 3195 3279 -4537 679 149 0 0 chr9 101440927 101441034 -16421593 - AluSg/x SINE Alu -5 304 198 692 85 0 9 chr9 101441035 101441141 -16421486 + MER51A LTR ERV1 530 634 0 2086 118 0 0 chr9 101441142 101441438 -16421189 - AluSq SINE Alu -17 296 1 350 266 58 46 chr9 101441803 101441976 -16420651 - MIR3 SINE MIR -4 204 30 2184 106 13 0 chr9 101442273 101442574 -16420053 - AluSg SINE Alu -5 305 1 1045 168 42 0 chr9 101442782 101442972 -16419655 - AluJb SINE Alu -8 304 107 1261 140 0 5 chr9 101442974 101443167 -16419460 + AluSc SINE Alu 1 192 -117 1265 166 64 15 chr9 101443555 101443820 -16418807 + AluJo SINE Alu 21 298 -14 2045 115 20 0 chr9 101443820 101444115 -16418512 + AluSx SINE Alu 1 301 -11 291 263 263 0 chr9 101444354 101444491 -16418136 - MIR SINE MIR -70 192 20 342 287 184 0 chr9 101445319 101445455 -16417172 - MER5A DNA MER1_type 0 189 29 1878 117 0 0 chr9 101445517 101445781 -16416846 - AluSq SINE Alu -49 264 1 557 188 80 0 chr9 101445793 101445905 -16416722 - FLAM_C SINE Alu -14 129 9 2306 80 6 6 chr9 101446276 101446587 -16416040 - AluSq SINE Alu -2 311 1 758 102 0 19 chr9 101447866 101447974 -16414653 + AluSx SINE Alu 2 107 -205 1146 158 0 0 chr9 101448041 101448224 -16414403 + AluSx SINE Alu 110 292 -18 351 219 23 12 chr9 101448247 101448358 -16414269 + MIR SINE MIR 103 214 -48 388 317 7 28 chr9 101448450 101448591 -16414036 - MIR SINE MIR -71 137 8 28 29 0 0 chr9 101448596 101448631 -16413996 + AT_rich Low_complexity Low_complexity 1 35 0 357 92 169 0 chr9 101448641 101448706 -16413921 - AluJ/FLAM SINE Alu -225 77 2 2083 117 3 22 chr9 101449068 101449384 -16413243 - AluSg SINE Alu 0 310 1 457 273 41 0 chr9 101449421 101449542 -16413085 + L2 LINE L2 3187 3312 -1 1532 208 111 56 chr9 101449766 101450022 -16412605 + LTR40b LTR ERVL 3 294 -168 879 162 30 76 chr9 101450022 101450220 -16412407 - MER53 DNA DNA 0 189 1 1532 208 111 56 chr9 101450220 101450395 -16412232 + LTR40b LTR ERVL 294 458 -4 2130 98 7 3 chr9 101450719 101451015 -16411612 - AluSp SINE Alu -14 299 3 1886 133 25 0 chr9 101451017 101451303 -16411324 - AluSq SINE Alu -16 297 5 2117 128 0 0 chr9 101451675 101451971 -16410656 - AluSx SINE Alu -13 299 4 2350 82 7 0 chr9 101452623 101452928 -16409699 + AluY SINE Alu 1 307 -4 211 352 23 11 chr9 101453008 101453096 -16409531 + MIR SINE MIR 46 134 -128 285 151 0 0 chr9 101453096 101453149 -16409478 - Alu SINE Alu 0 301 249 1530 115 0 0 chr9 101453256 101453465 -16409162 - AluSc SINE Alu -91 218 10 670 159 18 0 chr9 101453465 101453578 -16409049 + MER51-int LTR ERV1 3089 3203 -4613 2310 89 7 0 chr9 101453578 101453882 -16408745 - AluSx SINE Alu -6 306 1 1255 126 9 37 chr9 101453884 101454099 -16408528 + THE1B LTR MaLR 154 362 -2 213 39 0 0 chr9 101454102 101454128 -16408499 + (TCTA)n Simple_repeat Simple_repeat 3 28 0 623 186 130 67 chr9 101454167 101454264 -16408363 + L1MD3 LINE L1 7726 7815 -180 2197 109 0 0 chr9 101454264 101454558 -16408069 - AluSp SINE Alu -19 294 1 623 186 130 67 chr9 101454558 101454633 -16407994 + L1MD3 LINE L1 7815 7884 -111 1863 119 58 0 chr9 101454633 101454910 -16407717 - AluSg SINE Alu -17 293 1 623 186 130 67 chr9 101454910 101454989 -16407638 + L1MD3 LINE L1 7884 7994 -1 1379 98 5 5 chr9 101455002 101455196 -16407431 - L1PB1 LINE L1 0 6151 5958 1754 159 3 19 chr9 101455837 101456151 -16406476 - AluJo SINE Alu -3 309 1 1377 140 0 0 chr9 101456161 101456388 -16406239 - AluSg/x SINE Alu 0 310 84 193 243 86 43 chr9 101456604 101456674 -16405953 + L2 LINE L2 2996 3068 -204 648 296 36 16 chr9 101456823 101456966 -16405661 + MIR SINE MIR 15 162 -100 1964 149 67 6 chr9 101456966 101457294 -16405333 + MER7A DNA MER2_type 1 346 0 648 296 36 16 chr9 101457294 101457398 -16405229 + MIR SINE MIR 162 262 0 309 230 37 104 chr9 101457567 101457702 -16404925 - MIR SINE MIR -79 183 58 1790 131 6 72 chr9 101457725 101458045 -16404582 - AluSx SINE Alu -13 299 1 1475 164 55 0 chr9 101458921 101459199 -16403428 + AluSx SINE Alu 13 304 0 220 349 89 12 chr9 101459232 101459401 -16403226 + L2 LINE L2 2902 3083 -189 408 278 99 32 chr9 101459830 101460082 -16402545 + L2 LINE L2 2227 2495 -819 2012 135 0 3 chr9 101460113 101460409 -16402218 - AluSx SINE Alu -13 299 5 559 110 64 28 chr9 101460415 101460524 -16402103 - L1MA4A LINE L1 0 6303 6191 232 288 100 0 chr9 101460808 101460888 -16401739 - L2 LINE L2 -42 3230 3143 1177 203 19 15 chr9 101461102 101461363 -16401264 - MER58B DNA MER1_type -2 339 78 1447 162 123 0 chr9 101461378 101461631 -16400996 + AluSx SINE Alu 15 298 -14 649 126 63 25 chr9 101461632 101461811 -16400816 + AluJo SINE Alu 84 303 -9 1134 182 23 14 chr9 101461812 101462032 -16400595 + AluJb SINE Alu 85 306 -6 1627 174 0 11 chr9 101462049 101462331 -16400296 + AluJo SINE Alu 33 311 -1 2149 115 0 0 chr9 101462337 101462633 -16399994 + AluSq SINE Alu 1 296 -17 278 388 26 29 chr9 101462779 101463124 -16399503 - L1MC4a LINE L1 -1874 5934 5591 625 287 17 42 chr9 101464249 101464486 -16398141 - MIR SINE MIR -9 253 23 243 88 0 0 chr9 101464518 101464552 -16398075 + (TG)n Simple_repeat Simple_repeat 1 34 0 1565 191 7 10 chr9 101465038 101465192 -16397435 - AluJo SINE Alu -25 287 133 1651 131 29 35 chr9 101465192 101465505 -16397122 - AluY SINE Alu 0 311 1 1565 191 7 10 chr9 101465505 101465638 -16396989 - AluJo SINE Alu -179 133 1 208 347 0 31 chr9 101466052 101466150 -16396477 - MIR SINE MIR -63 145 59 316 291 35 56 chr9 101466258 101466430 -16396197 + MIR3 SINE MIR 29 191 -17 188 35 35 0 chr9 101467131 101467160 -16395467 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 2041 128 0 28 chr9 101467194 101467514 -16395113 + AluSx SINE Alu 1 311 -1 2128 115 23 0 chr9 101467569 101467874 -16394753 + AluSx SINE Alu 1 312 0 252 332 56 25 chr9 101467876 101468269 -16394358 + L1MEd LINE L1 1077 1510 -4862 1677 168 0 30 chr9 101468275 101468579 -16394048 + AluJo SINE Alu 1 295 -17 1902 128 7 23 chr9 101468653 101468958 -16393669 - AluSx SINE Alu -12 300 1 1215 164 36 122 chr9 101469022 101469210 -16393417 - AluJb SINE Alu -5 307 104 1985 110 43 0 chr9 101469210 101469491 -16393136 - AluSg SINE Alu -17 293 1 1215 164 36 122 chr9 101469491 101469505 -16393122 - AluJb SINE Alu -208 104 90 2064 116 7 0 chr9 101469505 101469798 -16392829 - AluSx SINE Alu -17 295 1 1215 164 36 122 chr9 101469798 101469930 -16392697 - AluJb SINE Alu -222 90 1 2312 93 3 0 chr9 101470292 101470602 -16392025 - AluSp SINE Alu -2 311 1 2137 130 0 0 chr9 101470978 101471286 -16391341 + AluSx SINE Alu 1 308 -4 183 80 0 0 chr9 101471357 101471382 -16391245 + (TTGG)n Simple_repeat Simple_repeat 2 26 0 2442 67 0 0 chr9 101471575 101471875 -16390752 - AluSx SINE Alu -12 300 1 786 139 33 0 chr9 101471898 101472020 -16390607 - AluJo SINE Alu -176 136 11 219 114 0 0 chr9 101472174 101472209 -16390418 + (CA)n Simple_repeat Simple_repeat 1 35 0 1912 162 0 0 chr9 101472309 101472611 -16390016 + AluJb SINE Alu 1 302 -10 1119 160 5 16 chr9 101473165 101473359 -16389268 + AluJb SINE Alu 105 296 -16 412 305 46 35 chr9 101473991 101474188 -16388439 - MLT1K LTR MaLR -250 338 140 466 347 16 16 chr9 101474476 101474666 -16387961 + MIR SINE MIR 25 214 -48 1363 145 5 0 chr9 101474670 101474891 -16387736 + L1M3 LINE L1 5561 5782 -398 477 258 102 74 chr9 101474892 101474938 -16387689 + MER34 LTR ERV1 1 44 -663 2129 114 0 3 chr9 101474938 101475237 -16387390 - AluSg SINE Alu -12 298 1 477 258 102 74 chr9 101475237 101475507 -16387120 + MER34 LTR ERV1 44 523 -184 1316 151 14 5 chr9 101475512 101475730 -16386897 + AluJo SINE Alu 82 301 -11 324 248 0 101 chr9 101475733 101475842 -16386785 + MER34 LTR ERV1 352 449 -93 2094 116 3 13 chr9 101475842 101476144 -16386483 - AluSg SINE Alu -11 299 1 2084 114 0 3 chr9 101476147 101476437 -16386190 - AluSx SINE Alu -23 289 1 267 54 0 0 chr9 101476462 101476499 -16386128 + (CA)n Simple_repeat Simple_repeat 2 38 0 304 182 0 65 chr9 101476504 101476545 -16386082 - MLT2A2 LTR ERVL -3 450 415 378 0 0 0 chr9 101476545 101476587 -16386040 + (TG)n Simple_repeat Simple_repeat 2 43 0 304 182 0 65 chr9 101476587 101476622 -16386005 - MLT2A2 LTR ERVL -38 415 379 233 315 14 0 chr9 101476607 101476680 -16385947 + MER81 DNA DNA 38 111 -3 * 1254 170 64 15 chr9 101477038 101477303 -16385324 + AluJo SINE Alu 21 298 -14 2037 116 20 0 chr9 101477303 101477597 -16385030 + AluSx SINE Alu 1 300 -12 291 263 263 0 chr9 101477836 101477973 -16384654 - MIR SINE MIR -70 192 20 210 227 45 0 chr9 101478744 101478788 -16383839 + MIR3 SINE MIR 109 154 -54 185 230 260 20 chr9 101478820 101478920 -16383707 + MER5A DNA MER1_type 34 157 -32 * 438 215 0 11 chr9 101478854 101478947 -16383680 - MER5A DNA MER1_type -80 109 18 2129 113 10 0 chr9 101478949 101479258 -16383369 - AluSx SINE Alu 0 312 1 194 167 50 50 chr9 101479752 101479812 -16382815 - L2 LINE L2 -187 3085 3026 1330 138 119 31 chr9 101479830 101480091 -16382536 - AluJb SINE Alu -14 298 15 189 296 20 41 chr9 101480101 101480199 -16382428 - L2 LINE L2 -260 3012 2917 215 233 14 14 chr9 101480241 101480314 -16382313 + (CA)n Simple_repeat Simple_repeat 1 73 0 2117 122 10 0 chr9 101480732 101481036 -16381591 - AluSx SINE Alu -5 307 1 500 305 124 35 chr9 101481203 101481688 -16380939 + L1MEc LINE L1 1614 2141 -4255 2111 112 6 19 chr9 101481697 101482011 -16380616 + AluSx SINE Alu 3 312 0 2065 103 0 14 chr9 101482162 101482452 -16380175 - AluSc SINE Alu -19 290 5 444 37 0 0 chr9 101482567 101482621 -16380006 + (TA)n Simple_repeat Simple_repeat 2 55 0 1743 166 3 19 chr9 101482643 101482957 -16379670 + AluJo SINE Alu 1 309 -3 757 317 120 17 chr9 101483769 101484122 -16378505 + L2 LINE L2 2705 3126 -146 1979 97 34 0 chr9 101484122 101484390 -16378237 - AluSx SINE Alu -33 279 3 757 317 120 17 chr9 101484390 101484554 -16378073 + L2 LINE L2 3126 3272 0 193 268 167 0 chr9 101484878 101485016 -16377611 + L2 LINE L2 2273 2433 -881 1382 271 153 44 chr9 101485124 101486591 -16376036 + L2 LINE L2 1851 3313 0 184 342 149 0 chr9 101486602 101486716 -16375911 + L2 LINE L2 3139 3269 -3 573 28 0 0 chr9 101486720 101486791 -16375836 + (TGGA)n Simple_repeat Simple_repeat 3 73 0 254 391 26 29 chr9 101487022 101487367 -16375260 + L1MC4a LINE L1 5591 5934 -1874 2178 108 0 0 chr9 101487513 101487809 -16374818 - AluSq SINE Alu -17 296 1 1627 174 0 11 chr9 101487815 101488097 -16374530 - AluJo SINE Alu -1 311 33 1148 176 23 14 chr9 101488114 101488335 -16374292 - AluJo SINE Alu -5 307 85 641 131 93 19 chr9 101488336 101488443 -16374184 - AluJo SINE Alu -10 302 188 373 119 15 30 chr9 101488447 101488514 -16374113 - AluJo SINE Alu -153 149 84 1447 162 123 0 chr9 101488515 101488768 -16373859 - AluSx SINE Alu -14 298 15 1310 180 19 15 chr9 101488783 101489044 -16373583 + MER58B DNA MER1_type 78 339 -2 232 288 100 0 chr9 101489258 101489338 -16373289 + L2 LINE L2 3143 3230 -42 559 110 64 28 chr9 101489622 101489731 -16372896 + L1MA4A LINE L1 6191 6303 0 2299 104 0 0 chr9 101489737 101490045 -16372582 + AluSx SINE Alu 5 312 0 295 290 137 0 chr9 101490068 101490199 -16372428 + L3 LINE CR1 1413 1561 -16 337 217 152 0 chr9 101491039 101491131 -16371496 + L1PA13 LINE L1 6058 6163 0 181 297 277 0 chr9 101491375 101491476 -16371151 + MIR SINE MIR 50 178 -84 1984 101 4 0 chr9 101491618 101491885 -16370742 + AluSx SINE Alu 1 268 -44 238 219 0 31 chr9 101492222 101492286 -16370341 - MER46C DNA MER2_type -8 330 269 233 244 186 12 chr9 101492287 101492373 -16370254 - MIR SINE MIR -127 135 35 221 283 0 0 chr9 101492726 101492786 -16369841 + L2 LINE L2 3234 3293 -20 307 269 167 6 chr9 101493308 101493464 -16369163 - MIR3 SINE MIR -7 201 21 473 243 10 0 chr9 101493507 101493610 -16369017 + MIR3 SINE MIR 102 205 -3 205 167 0 30 chr9 101494274 101494340 -16368287 + (CA)n Simple_repeat Simple_repeat 1 64 0 482 271 148 0 chr9 101494872 101495027 -16367600 + MIR SINE MIR 63 240 -22 548 125 0 0 chr9 101495069 101495157 -16367470 - AluSc SINE Alu -13 296 209 248 211 196 68 chr9 101495330 101495463 -16367164 + L2 LINE L2 3160 3309 -4 185 250 5 169 chr9 101495531 101495715 -16366912 - L2 LINE L2 -210 3062 2909 186 322 34 0 chr9 101496379 101496438 -16366189 + MIR SINE MIR 17 77 -131 438 281 184 10 chr9 101496486 101496682 -16365945 - MIR SINE MIR -14 248 19 344 224 37 31 chr9 101496692 101496801 -16365826 + MIR3 SINE MIR 74 186 -22 2142 116 0 3 chr9 101497293 101497594 -16365033 - AluSx SINE Alu -11 301 2 342 311 80 20 chr9 101497828 101497979 -16364648 - L2 LINE L2 -5 3267 3108 448 296 12 2 chr9 101498582 101498739 -16363888 + MIR3 SINE MIR 5 162 -60 302 210 0 0 chr9 101498893 101498955 -16363672 + MIR SINE MIR 174 235 -27 247 190 38 38 chr9 101498989 101499068 -16363559 - MIR SINE MIR -175 87 9 186 271 189 33 chr9 101499851 101499973 -16362654 - MIR SINE MIR -72 190 50 221 310 0 0 chr9 101500592 101500663 -16361964 - L3 LINE CR1 -548 1029 959 252 343 39 0 chr9 101500845 101500947 -16361680 + L2 LINE L2 3208 3313 0 229 267 62 30 chr9 101501008 101501126 -16361501 + MIR SINE MIR 44 164 -62 194 191 71 0 chr9 101501771 101501813 -16360814 + MIR SINE MIR 89 133 -75 411 281 22 7 chr9 101502262 101502397 -16360230 + MIR3 SINE MIR 44 180 -28 261 315 28 49 chr9 101502731 101502874 -16359753 + L2 LINE L2 2945 3084 -188 193 346 0 25 chr9 101503795 101503876 -16358751 - MIR SINE MIR -171 91 13 260 291 214 0 chr9 101503902 101504019 -16358608 - MIR3 SINE MIR -18 190 49 271 295 89 0 chr9 101504716 101504833 -16357794 - MIR SINE MIR -66 142 30 411 283 40 0 chr9 101504936 101505054 -16357573 + MIR SINE MIR 63 183 -63 573 238 25 74 chr9 101505395 101505564 -16357063 + MIR SINE MIR 31 186 -76 2316 103 0 0 chr9 101505564 101505876 -16356751 + AluSx SINE Alu 1 312 0 573 238 25 74 chr9 101505876 101505950 -16356677 + MIR SINE MIR 186 262 0 233 227 0 93 chr9 101506191 101506266 -16356361 - MER5A DNA MER1_type -8 181 114 * 258 260 58 58 chr9 101506211 101506315 -16356312 + MER5A DNA MER1_type 38 141 -48 292 308 0 45 chr9 101506693 101506826 -16355801 + L2 LINE L2 2924 3050 -222 226 267 114 19 chr9 101507029 101507134 -16355493 + L2 LINE L2 3158 3272 0 360 0 0 0 chr9 101507153 101507193 -16355434 + (TG)n Simple_repeat Simple_repeat 2 41 0 309 240 143 0 chr9 101507336 101507427 -16355200 - HsTC2 DNA Tc2 0 1900 1795 189 147 0 0 chr9 101507775 101507809 -16354818 + (TGG)n Simple_repeat Simple_repeat 2 35 0 2739 189 67 2 chr9 101508038 101508624 -16354003 + L1MB4 LINE L1 5551 6174 -6 2147 110 0 0 chr9 101508645 101508935 -16353692 + AluSx SINE Alu 1 290 -22 242 156 22 0 chr9 101508966 101509011 -16353616 + L3 LINE CR1 1419 1464 -113 1582 142 24 28 chr9 101509070 101509358 -16353269 - AluJo SINE Alu -14 298 12 365 337 6 37 chr9 101509474 101509637 -16352990 - Charlie8 DNA MER1_type -2193 224 67 303 71 0 0 chr9 101509931 101509973 -16352654 + (TG)n Simple_repeat Simple_repeat 2 43 0 273 284 52 17 chr9 101510864 101510980 -16351647 - MIR SINE MIR -72 136 17 290 26 26 0 chr9 101511691 101511730 -16350897 + (CA)n Simple_repeat Simple_repeat 2 41 0 270 338 80 33 chr9 101511889 101512040 -16350587 - MIR3 SINE MIR -20 188 31 489 298 30 12 chr9 101512239 101512407 -16350220 + LTR33 LTR ERVL 8 178 -343 438 283 58 15 chr9 101512475 101512680 -16349947 + LTR33 LTR ERVL 308 521 0 296 286 27 27 chr9 101512727 101512839 -16349788 - MIR SINE MIR -58 150 39 873 167 95 45 chr9 101512936 101513157 -16349470 - MER106A DNA MER1_type -4 232 1 236 225 67 34 chr9 101513173 101513262 -16349365 - MIR SINE MIR -73 189 98 258 290 50 10 chr9 101513757 101513857 -16348770 - MIR SINE MIR -86 122 18 21 0 0 0 chr9 101514092 101514113 -16348514 + AT_rich Low_complexity Low_complexity 1 21 0 538 335 51 38 chr9 101514511 101514962 -16347665 + L1ME3A LINE L1 5471 5927 -243 541 137 10 10 chr9 101514973 101515075 -16347552 + L1MD2 LINE L1 5688 5789 -570 2064 232 70 56 chr9 101515084 101515251 -16347376 + MLT1E2 LTR MaLR 7 170 -456 1986 121 0 35 chr9 101515251 101515427 -16347200 - AluSx SINE Alu -10 302 140 2271 94 0 0 chr9 101515427 101515736 -16346891 - AluSc SINE Alu 0 309 1 1986 121 0 35 chr9 101515736 101515872 -16346755 - AluSx SINE Alu -172 140 1 2064 232 70 56 chr9 101515872 101516315 -16346312 + MLT1E2 LTR MaLR 170 626 0 1686 206 23 9 chr9 101516315 101516664 -16345963 + L1MD2 LINE L1 5788 6141 -218 2028 230 45 29 chr9 101516684 101517241 -16345386 + MER90 LTR ERV1 4 569 -6 476 209 73 0 chr9 101517259 101517369 -16345258 + L1MD2 LINE L1 6228 6345 -14 2100 111 0 49 chr9 101517375 101517699 -16344928 + AluSx SINE Alu 1 308 -4 229 219 16 0 chr9 101517995 101518059 -16344568 + A-rich Low_complexity Low_complexity 1 65 0 1468 138 3 135 chr9 101518070 101518410 -16344217 + AluSx SINE Alu 3 297 -15 2416 110 11 8 chr9 101518429 101518783 -16343844 + THE1A LTR MaLR 1 355 0 2086 123 0 22 chr9 101518809 101519126 -16343501 + AluSq SINE Alu 1 310 -3 2037 98 0 63 chr9 101519276 101519592 -16343035 + AluSx SINE Alu 1 296 -16 441 0 0 0 chr9 101519690 101519739 -16342888 + (TG)n Simple_repeat Simple_repeat 2 50 0 1856 78 0 64 chr9 101519829 101520110 -16342517 - L1PA8 LINE L1 -1 6171 5909 2675 154 83 4 chr9 101520202 101520670 -16341957 + MLT1D LTR MaLR 1 505 0 806 161 0 29 chr9 101521247 101521384 -16341243 - FLAM_C SINE Alu 0 133 1 884 208 23 0 chr9 101521796 101521969 -16340658 + LTR40a LTR ERVL 331 507 -12 1725 208 66 28 chr9 101521978 101522522 -16340105 + L1M4 LINE L1 4388 4952 -1194 1853 184 43 6 chr9 101523975 101524301 -16338326 - MER58B DNA MER1_type -2 339 2 225 225 8 101 chr9 101524462 101524591 -16338036 + L1ME4a LINE L1 5960 6076 -45 1577 207 7 0 chr9 101524605 101524905 -16337722 - AluJo SINE Alu -10 302 1 648 265 59 15 chr9 101526239 101526443 -16336184 + MIR SINE MIR 50 262 0 2259 44 0 4 chr9 101526783 101527057 -16335570 - AluY SINE Alu -1 310 38 231 234 47 0 chr9 101527191 101527255 -16335372 - MIR SINE MIR -84 124 58 364 336 0 9 chr9 101528608 101528721 -16333906 + MIR SINE MIR 42 153 -55 233 266 23 86 chr9 101529050 101529178 -16333449 + MIR SINE MIR 119 238 -24 592 277 76 0 chr9 101529728 101529926 -16332701 + MIR SINE MIR 33 243 -19 2423 58 3 0 chr9 101530298 101530593 -16332034 + AluSp SINE Alu 1 296 -17 294 216 200 24 chr9 101530906 101531031 -16331596 - MIR3 SINE MIR -42 166 20 304 379 30 8 chr9 101531070 101531202 -16331425 + L2 LINE L2 3138 3272 0 229 245 0 19 chr9 101531501 101531554 -16331073 - MIR3 SINE MIR -53 155 104 210 37 0 0 chr9 101532144 101532171 -16330456 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 618 118 0 0 chr9 101532176 101532261 -16330366 - FLAM_C SINE Alu -23 120 36 241 229 202 9 chr9 101532510 101532619 -16330008 - MIR SINE MIR -62 146 17 205 279 15 15 chr9 101532625 101532693 -16329934 + L2 LINE L2 2992 3059 -213 294 210 16 0 chr9 101533091 101533153 -16329474 - MIR SINE MIR -65 143 81 310 264 6 101 chr9 101533585 101533744 -16328883 - L3 LINE CR1 -104 1473 1330 188 348 125 0 chr9 101533734 101533846 -16328781 - MIR SINE MIR -113 149 24 * 22 56 0 0 chr9 101534833 101534869 -16327758 + GC_rich Low_complexity Low_complexity 1 36 0 208 182 104 52 chr9 101535962 101536039 -16326588 - MIR SINE MIR -62 146 66 1524 107 8 58 chr9 101536473 101536715 -16325912 + MER30 DNA MER1_type 1 230 0 231 307 59 10 chr9 101537917 101538018 -16324609 - MER5A DNA MER1_type -30 159 54 2572 93 3 24 chr9 101538338 101538715 -16323912 - L1PB1 LINE L1 -1 6150 5782 382 157 5 110 chr9 101538753 101538862 -16323765 + L1MC4 LINE L1 1995 6985 -1337 537 263 69 17 chr9 101539579 101539754 -16322873 - MIR SINE MIR -32 230 47 182 227 0 23 chr9 101540818 101540862 -16321765 - MIR3 SINE MIR -3 205 163 182 216 59 0 chr9 101541032 101541083 -16321544 - MIR SINE MIR -73 135 82 268 316 94 0 chr9 101541792 101541909 -16320718 + MIR SINE MIR 81 208 -54 2107 111 16 3 chr9 101541946 101542288 -16320339 - AluSx SINE Alu 0 346 1 371 139 74 16 chr9 101542289 101542411 -16320216 + CT-rich Low_complexity Low_complexity 4 132 0 1691 183 0 10 chr9 101542416 101542717 -16319910 - AluJo SINE Alu -14 298 1 384 301 15 58 chr9 101542896 101543155 -16319472 - L2 LINE L2 -213 3059 2812 318 309 50 0 chr9 101543204 101543327 -16319300 + MIR SINE MIR 13 147 -61 309 264 43 36 chr9 101543356 101543496 -16319131 + MER5A DNA MER1_type 13 153 -36 289 288 59 46 chr9 101543372 101543525 -16319102 - MER5B DNA MER1_type -16 162 8 * 906 291 109 19 chr9 101543556 101543931 -16318696 + L2 LINE L2 2899 3307 -6 186 43 0 0 chr9 101543964 101543987 -16318640 + (T)n Simple_repeat Simple_repeat 1 23 0 986 193 0 43 chr9 101544000 101544207 -16318420 + AluJo SINE Alu 23 220 -92 510 161 58 0 chr9 101544225 101544312 -16318315 + AluSg/x SINE Alu 159 250 -62 1158 159 35 26 chr9 101544312 101544719 -16317908 + AluJo SINE Alu 85 312 0 404 39 26 52 chr9 101544724 101544801 -16317826 + (GAAA)n Simple_repeat Simple_repeat 4 78 0 306 50 0 0 chr9 101544801 101544841 -16317786 + (CAGG)n Simple_repeat Simple_repeat 2 41 0 192 77 0 0 chr9 101544996 101545022 -16317605 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 216 355 50 8 chr9 101545030 101545151 -16317476 + MIR3 SINE MIR 79 204 -4 25 65 0 0 chr9 101545780 101545826 -16316801 + GC_rich Low_complexity Low_complexity 1 46 0 917 116 22 39 chr9 101545837 101546044 -16316583 + AluSq SINE Alu 107 310 0 580 256 193 74 chr9 101546046 101546627 -16316000 - HAL1 LINE L1 -1852 655 6 935 317 45 32 chr9 101546648 101547232 -16315395 + L2 LINE L2 1819 2409 -905 2093 136 0 7 chr9 101547246 101547556 -16315071 + AluSx SINE Alu 1 308 -4 2349 87 0 16 chr9 101547556 101547868 -16314759 + AluY SINE Alu 1 307 -4 215 360 27 0 chr9 101547948 101548023 -16314604 + MIR SINE MIR 46 122 -140 1991 119 0 50 chr9 101548026 101548346 -16314281 - AluSx SINE Alu 0 312 9 826 242 67 81 chr9 101548360 101548612 -16314015 - L1MD3 LINE L1 -1123 6872 6658 1801 167 51 91 chr9 101548612 101548747 -16313880 + MLT2D LTR ERVL 1 140 -274 1682 119 0 4 chr9 101548747 101548990 -16313637 + AluSx SINE Alu 53 294 -18 1801 167 51 91 chr9 101548990 101549285 -16313342 + MLT2D LTR ERVL 140 414 0 826 242 67 81 chr9 101549285 101549330 -16313297 - L1MD3 LINE L1 -1337 6658 6614 1945 109 33 149 chr9 101549332 101549361 -16313266 + MSTA LTR MaLR 1 32 -396 2302 107 11 36 chr9 101549361 101549724 -16312903 - THE1A LTR MaLR -1 354 1 12675 75 2 1 chr9 101549724 101551302 -16311325 - THE1A-int LTR MaLR 0 1580 1 2302 121 8 33 chr9 101551302 101551666 -16310961 - THE1A LTR MaLR 0 355 1 1945 109 33 149 chr9 101551666 101551816 -16310811 + MSTA LTR MaLR 30 196 -232 2220 107 7 0 chr9 101551816 101552124 -16310503 - AluSg SINE Alu 0 310 1 2067 122 0 3 chr9 101552126 101552422 -16310205 - AluSg SINE Alu -15 295 1 1945 109 33 149 chr9 101552422 101552449 -16310178 + MSTA LTR MaLR 197 226 -202 1783 177 10 3 chr9 101552449 101552759 -16309868 + AluJb SINE Alu 1 312 0 1945 109 33 149 chr9 101552759 101553029 -16309598 + MSTA LTR MaLR 226 428 0 934 76 0 0 chr9 101553075 101553193 -16309434 + ERVL LTR ERVL 3022 3139 -2625 7851 140 23 6 chr9 101553262 101554567 -16308060 + ERVL LTR ERVL 3148 4477 -1177 860 216 6 0 chr9 101554567 101554734 -16307893 - FRAM SINE Alu -17 159 1 1346 165 32 28 chr9 101554734 101554983 -16307644 + ERVL LTR ERVL 4522 4771 -993 3236 123 20 12 chr9 101554989 101555483 -16307144 - MER61E LTR ERV1 -4 565 68 323 182 0 11 chr9 101555959 101556047 -16306580 + CT-rich Low_complexity Low_complexity 2 88 0 608 72 0 0 chr9 101556738 101556821 -16305806 - MER61E LTR ERV1 -486 83 1 4561 159 25 62 chr9 101556825 101557601 -16305026 - MER61E-int LTR ERV1 -2 6994 6191 1520 106 0 0 chr9 101557601 101557800 -16304827 - AluSx SINE Alu -113 199 1 4561 159 25 62 chr9 101557800 101558427 -16304200 - MER61E-int LTR ERV1 -805 6191 4617 2155 104 0 0 chr9 101558427 101558715 -16303912 - AluSg SINE Alu -22 288 1 1255 126 9 37 chr9 101558717 101558932 -16303695 + THE1B LTR MaLR 154 362 -2 213 39 0 0 chr9 101558935 101558961 -16303666 + (TCTA)n Simple_repeat Simple_repeat 3 28 0 619 186 131 63 chr9 101559000 101559097 -16303530 + L1MD3 LINE L1 7726 7815 -180 2197 109 0 0 chr9 101559097 101559391 -16303236 - AluSp SINE Alu -19 294 1 619 186 131 63 chr9 101559391 101559466 -16303161 + L1MD3 LINE L1 7815 7884 -111 1918 108 58 0 chr9 101559466 101559743 -16302884 - AluSg SINE Alu -17 293 1 619 186 131 63 chr9 101559743 101559821 -16302806 + L1MD3 LINE L1 7884 7994 -1 315 94 38 0 chr9 101559833 101559886 -16302741 - L1PB1 LINE L1 0 6151 6097 249 64 85 0 chr9 101559986 101560033 -16302594 + Alu SINE Alu 252 302 0 1542 142 0 8 chr9 101560037 101560276 -16302351 - AluJo SINE Alu -75 237 1 409 346 3 33 chr9 101560300 101560606 -16302021 + L1MC4a LINE L1 5683 5979 -1829 1838 166 0 10 chr9 101560726 101561034 -16301593 - AluJb SINE Alu -7 305 1 255 167 133 0 chr9 101561036 101561096 -16301531 - L1MCa LINE L1 -4819 1745 1678 * 417 234 189 41 chr9 101561073 101561363 -16301264 - L1MC4 LINE L1 -8 8452 8023 2103 110 0 10 chr9 101561379 101561679 -16300948 - AluSq SINE Alu -11 302 6 1098 105 0 0 chr9 101561686 101561829 -16300798 - AluJb SINE Alu -167 145 3 628 241 18 24 chr9 101561863 101562029 -16300598 - MER31B LTR ERV1 -301 165 1 1114 263 15 12 chr9 101562032 101562370 -16300257 - L1MCa LINE L1 -4966 1079 741 1828 125 44 7 chr9 101562396 101562693 -16299934 + AluSx SINE Alu 1 308 -4 1271 145 7 110 chr9 101562696 101562986 -16299641 - AluJb SINE Alu -22 290 31 1547 172 208 20 chr9 101562986 101563419 -16299208 + MER52A LTR ERV1 1 604 -1151 1446 139 48 0 chr9 101563430 101563660 -16298967 - MER52A LTR ERV1 -885 870 630 2146 84 0 4 chr9 101563660 101563935 -16298692 + AluSq SINE Alu 21 294 -19 611 125 28 125 chr9 101563935 101564079 -16298548 - FRAM SINE Alu 0 176 47 1528 174 3 68 chr9 101564098 101564420 -16298207 - AluJo SINE Alu -1 311 11 317 156 47 31 chr9 101565055 101565119 -16297508 - MIR SINE MIR -90 172 108 229 390 27 32 chr9 101565649 101565836 -16296791 - L2 LINE L2 -191 3081 2896 1066 179 10 0 chr9 101565836 101566036 -16296591 - AluJo SINE Alu -7 305 104 1185 93 0 12 chr9 101566036 101566198 -16296429 + AluSg SINE Alu 1 160 -150 444 311 95 50 chr9 101566301 101566764 -16295863 - HAL1 LINE L1 -2001 506 23 496 338 94 48 chr9 101566794 101567283 -16295344 - L1M4 LINE L1 -3227 2919 2401 1423 175 46 19 chr9 101567283 101567546 -16295081 + L1PB4 LINE L1 5886 6155 -1 496 338 94 48 chr9 101567546 101567600 -16295027 - L1M4 LINE L1 -3745 2401 2351 181 162 27 0 chr9 101573422 101573459 -16289168 - L3 LINE CR1 -635 942 905 198 269 258 0 chr9 101574438 101574624 -16288003 + L2 LINE L2 1973 2206 -1108 815 128 0 0 chr9 101574964 101575081 -16287546 + FLAM_C SINE Alu 1 117 -26 2367 252 103 24 chr9 101575128 101576187 -16286440 + L1MEc LINE L1 149 1291 -5105 658 310 22 18 chr9 101576572 101576798 -16285829 - MIR SINE MIR -3 259 33 297 0 0 0 chr9 101577803 101577836 -16284791 + (CCCCAG)n Simple_repeat Simple_repeat 3 35 0 331 239 77 39 chr9 101578172 101578304 -16284323 - MIR SINE MIR -41 167 24 317 290 50 0 chr9 101578668 101578802 -16283825 - MIR SINE MIR -62 146 34 246 217 47 16 chr9 101578802 101578911 -16283716 + MIR SINE MIR 96 208 -54 251 304 85 3 chr9 101579389 101579529 -16283098 + MIR SINE MIR 3 151 -63 350 290 40 103 chr9 101579612 101579836 -16282791 - Charlie8 DNA MER1_type -2207 210 1 192 211 0 0 chr9 101580118 101580156 -16282471 + MIR SINE MIR 110 147 -61 618 308 16 0 chr9 101580285 101580467 -16282160 + MIR SINE MIR 78 262 0 312 278 56 56 chr9 101580981 101581143 -16281484 - MIR SINE MIR -91 171 10 308 275 30 8 chr9 101581257 101581375 -16281252 - MIR SINE MIR -67 141 20 233 284 0 0 chr9 101581444 101581511 -16281116 + L2 LINE L2 3197 3263 -9 469 311 73 12 chr9 101582066 101582290 -16280337 - MIR SINE MIR -22 240 16 1608 170 38 47 chr9 101582746 101583088 -16279539 - MER21B LTR ERV1 -21 842 504 269 326 82 0 chr9 101583089 101583236 -16279391 + MER112 DNA MER1_type 90 248 -12 1290 80 0 6 chr9 101583294 101583470 -16279157 - AluY SINE Alu -16 295 121 283 239 83 46 chr9 101584019 101584128 -16278499 + MIR SINE MIR 19 131 -77 215 293 57 9 chr9 101586719 101586825 -16275802 + MIR3 SINE MIR 60 170 -38 209 295 71 54 chr9 101588175 101588287 -16274340 + MIR SINE MIR 60 173 -89 202 256 113 38 chr9 101590778 101590911 -16271716 - MIR SINE MIR -73 189 47 255 308 63 35 chr9 101591363 101591558 -16271069 - MIR SINE MIR -24 238 36 197 163 70 0 chr9 101591545 101591588 -16271039 + MIR SINE MIR 108 153 -55 * 234 306 0 0 chr9 101591885 101591957 -16270670 + L2 LINE L2 2995 3066 -206 285 254 15 0 chr9 101593122 101593189 -16269438 - MIR SINE MIR -147 115 48 301 287 238 30 chr9 101593886 101594050 -16268577 + L3 LINE CR1 1298 1495 -82 479 311 24 61 chr9 101594183 101594395 -16268232 + MIR SINE MIR 13 216 -46 206 302 0 0 chr9 101594474 101594527 -16268100 - L2 LINE L2 -40 3273 3221 256 203 34 17 chr9 101594651 101594710 -16267917 + MIR SINE MIR 104 163 -99 222 301 0 32 chr9 101595767 101595860 -16266767 - MIR SINE MIR -5 257 168 271 293 40 20 chr9 101595986 101596085 -16266542 - MIR SINE MIR -65 143 43 202 255 39 0 chr9 101597199 101597250 -16265377 - L2 LINE L2 -9 3263 3211 2735 19 0 0 chr9 101598272 101598580 -16264047 - AluYb8 SINE Alu -10 308 1 244 349 0 9 chr9 101598885 101598991 -16263636 + L2 LINE L2 2971 3075 -197 228 271 17 0 chr9 101602464 101602523 -16260104 + L2 LINE L2 2995 3054 -218 235 261 230 19 chr9 101603476 101603637 -16258990 - MIR3 SINE MIR -10 198 4 2276 98 3 0 chr9 101604066 101604372 -16258255 + AluSx SINE Alu 2 308 -4 401 314 114 0 chr9 101604680 101604820 -16257807 + MIR SINE MIR 40 195 -67 248 322 148 7 chr9 101605430 101605579 -16257048 + MIR SINE MIR 93 262 0 745 308 64 29 chr9 101605683 101606167 -16256460 - L1ME LINE L1 -298 5823 5323 250 250 17 0 chr9 101606329 101606389 -16256238 + CT-rich Low_complexity Low_complexity 1 61 0 278 192 0 0 chr9 101607009 101607061 -16255566 + MIR SINE MIR 184 235 -27 236 323 17 32 chr9 101608192 101608316 -16254311 + MIR SINE MIR 48 174 -53 371 169 39 13 chr9 101609677 101609754 -16252873 + MER5A DNA MER1_type 43 121 -68 322 259 143 27 chr9 101609799 101609946 -16252681 - MIR SINE MIR -17 245 82 202 237 301 11 chr9 101610194 101610287 -16252340 - MIR SINE MIR -65 143 24 195 368 34 5 chr9 101610333 101610435 -16252192 - MIR SINE MIR -69 139 31 184 326 11 45 chr9 101610717 101610806 -16251821 + MIR SINE MIR 10 95 -167 860 261 9 14 chr9 101611062 101611273 -16251354 - MIR SINE MIR -19 243 34 257 294 150 20 chr9 101611377 101611577 -16251050 - MIR3 SINE MIR -12 250 19 630 308 145 0 chr9 101611580 101611807 -16250820 - MIR SINE MIR -1 261 2 438 248 44 9 chr9 101611812 101611925 -16250702 - MIR SINE MIR -116 146 30 337 276 30 15 chr9 101613030 101613164 -16249463 - MER103 DNA DNA -7 159 24 368 290 39 45 chr9 101614643 101614798 -16247829 + MIR SINE MIR 49 202 -60 351 380 24 35 chr9 101615352 101615607 -16247020 - L2 LINE L2 -20 3252 3001 428 315 71 0 chr9 101615683 101615810 -16246817 - MIR SINE MIR -75 187 52 2227 88 0 25 chr9 101616075 101616394 -16246233 - AluY SINE Alu 0 311 1 417 261 55 36 chr9 101616723 101616888 -16245739 + MER5A DNA MER1_type 18 185 -4 438 256 210 0 chr9 101619300 101619476 -16243151 + MIR SINE MIR 28 240 -22 216 324 14 0 chr9 101619936 101620010 -16242617 - MIR SINE MIR -64 144 70 297 330 38 38 chr9 101620073 101620282 -16242345 - L2 LINE L2 -215 3057 2849 459 278 99 13 chr9 101620437 101620588 -16242039 - MIR SINE MIR -71 191 28 306 331 71 8 chr9 101620975 101621102 -16241525 + L2 LINE L2 3136 3270 -2 263 246 0 43 chr9 101621987 101622056 -16240571 - L2 LINE L2 0 3272 3207 567 209 109 63 chr9 101622118 101622357 -16240270 - Charlie8 DNA MER1_type -2142 275 26 196 333 0 0 chr9 101623136 101623190 -16239437 - L2 LINE L2 -4 3268 3215 545 221 0 0 chr9 101623342 101623446 -16239181 + FLAM_A SINE Alu 34 137 -5 217 268 87 134 chr9 101623956 101624187 -16238440 - L2 LINE L2 -49 3223 3004 331 254 158 40 chr9 101625284 101625461 -16237166 - L1ME4a LINE L1 -204 5917 5720 248 316 59 72 chr9 101626179 101626331 -16236296 - MER5A DNA MER1_type -2 187 38 251 341 65 33 chr9 101626657 101626871 -16235756 - L2 LINE L2 -120 3152 2932 195 323 81 43 chr9 101626894 101627055 -16235572 + MER5A DNA MER1_type 18 184 -5 237 342 13 13 chr9 101629955 101630107 -16232520 - L1ME LINE L1 -233 5888 5737 326 359 88 41 chr9 101630595 101631107 -16231520 - L2 LINE L2 -559 2755 2220 187 278 83 46 chr9 101631188 101631296 -16231331 - L2 LINE L2 -1365 1949 1838 4675 214 21 40 chr9 101631806 101633795 -16228832 + HERVH LTR ERV1 590 2226 -4418 1057 259 77 7 chr9 101634191 101634420 -16228207 + L1MEc LINE L1 2115 2327 -3888 1486 224 44 33 chr9 101634420 101634781 -16227846 + MLT1A1 LTR MaLR 1 365 0 1057 259 77 7 chr9 101634781 101635010 -16227617 + L1MEc LINE L1 2327 2563 -3652 273 285 29 7 chr9 101635016 101635153 -16227474 + L1MEc LINE L1 2482 2621 -3594 196 240 0 14 chr9 101636204 101636288 -16226339 + L2 LINE L2 2906 2988 -325 182 304 130 0 chr9 101636963 101637055 -16225572 - MIR SINE MIR -68 140 37 210 150 0 25 chr9 101639462 101639502 -16223125 + (CGGGGG)n Simple_repeat Simple_repeat 2 40 0 564 185 37 7 chr9 101639620 101639755 -16222872 + LTR37A LTR ERV1 288 426 0 2288 104 0 0 chr9 101639817 101640126 -16222501 + AluSx SINE Alu 1 309 -3 338 344 48 35 chr9 101641353 101641580 -16221047 - MIR SINE MIR -30 232 3 315 275 72 6 chr9 101641601 101641768 -16220859 - L1ME4a LINE L1 -175 5946 5769 236 259 63 97 chr9 101641806 101642064 -16220563 - HAL1b LINE L1 -24 1324 1226 520 281 71 52 chr9 101642069 101642336 -16220291 - L2 LINE L2 -842 2472 2201 367 258 9 9 chr9 101642573 101642665 -16219962 - L1MC4 LINE L1 -1343 6979 1991 3585 56 2 7 chr9 101642665 101643115 -16219512 - LTR7 LTR ERV1 -2 448 1 1769 47 8 20 chr9 101643115 101643368 -16219259 - HERVH LTR ERV1 0 7713 7464 303 304 23 64 chr9 101644246 101644417 -16218210 - MER5A DNA MER1_type -24 165 2 205 198 0 0 chr9 101644542 101644591 -16218036 - MIR SINE MIR -62 146 105 210 255 0 20 chr9 101645116 101645167 -16217460 - MIR SINE MIR -180 82 33 301 313 34 28 chr9 101645378 101645554 -16217073 + L2 LINE L2 2518 2694 -620 1725 119 129 22 chr9 101645800 101646111 -16216516 + MER2 DNA MER2_type 1 344 0 553 305 18 0 chr9 101646944 101647108 -16215519 - MIR SINE MIR -29 233 67 383 321 61 18 chr9 101647223 101647388 -16215239 + MIR SINE MIR 21 192 -70 1822 123 3 21 chr9 101648024 101648309 -16214318 + AluSx SINE Alu 1 280 -32 305 297 90 7 chr9 101648778 101648923 -16213704 + MIR SINE MIR 38 194 -68 348 176 0 0 chr9 101649155 101649223 -16213404 + (CA)n Simple_repeat Simple_repeat 1 68 0 427 296 68 68 chr9 101650138 101650358 -16212269 - L2 LINE L2 -87 3185 2966 386 283 21 41 chr9 101650620 101650765 -16211862 - L3b LINE CR1 -121 1462 1321 627 263 31 40 chr9 101651915 101652143 -16210484 - MIR SINE MIR -21 241 16 2318 88 0 0 chr9 101652389 101652696 -16209931 - AluSc SINE Alu -2 307 1 1385 217 28 100 chr9 101653226 101653324 -16209303 - Charlie4a DNA MER1_type -1453 508 405 2161 115 3 0 chr9 101653324 101653629 -16208998 + AluSx SINE Alu 1 306 -6 1385 217 28 100 chr9 101653629 101653697 -16208930 - Charlie4a DNA MER1_type -1556 405 334 1742 129 0 4 chr9 101653697 101653952 -16208675 - AluSg SINE Alu -21 289 36 1385 217 28 100 chr9 101653952 101654313 -16208314 - Charlie4a DNA MER1_type -1627 334 18 521 227 94 0 chr9 101655302 101655430 -16207197 - MIR SINE MIR -91 171 32 196 221 250 0 chr9 101655585 101655653 -16206974 + L2 LINE L2 2976 3060 -212 445 322 10 83 chr9 101656630 101656944 -16205683 + L1MC1 LINE L1 5521 5811 -1997 354 23 0 0 chr9 101657061 101657104 -16205523 + (TG)n Simple_repeat Simple_repeat 2 44 0 21 36 0 0 chr9 101657141 101657169 -16205458 + AT_rich Low_complexity Low_complexity 1 28 0 829 118 22 22 chr9 101657208 101657344 -16205283 + L1MC1 LINE L1 6198 6333 0 2322 84 3 0 chr9 101657501 101657799 -16204828 + AluSq SINE Alu 1 299 -14 226 296 20 31 chr9 101657937 101658035 -16204592 + L2 LINE L2 3176 3272 0 279 276 99 55 chr9 101658306 101658487 -16204140 - Charlie8 DNA MER1_type -2203 214 26 1783 133 6 71 chr9 101658663 101658985 -16203642 + AluSx SINE Alu 1 301 -11 309 230 37 104 chr9 101659008 101659143 -16203484 + MIR SINE MIR 58 183 -79 663 292 36 16 chr9 101659312 101659416 -16203211 - MIR SINE MIR 0 262 162 1977 146 67 6 chr9 101659416 101659744 -16202883 - MER7A DNA MER2_type 0 346 1 663 292 36 16 chr9 101659744 101659887 -16202740 - MIR SINE MIR -100 162 15 193 243 86 43 chr9 101660036 101660106 -16202521 - L2 LINE L2 -204 3068 2996 1361 145 0 0 chr9 101660322 101660549 -16202078 + AluSg/x SINE Alu 84 310 0 1754 159 3 19 chr9 101660559 101660873 -16201754 + AluJo SINE Alu 1 309 -3 2309 84 0 6 chr9 101661939 101662250 -16200377 + AluSc SINE Alu 1 309 0 1973 123 3 63 chr9 101662272 101662604 -16200023 + AluSx SINE Alu 1 312 0 377 298 50 19 chr9 101663628 101663789 -16198838 - MIR SINE MIR -11 251 86 271 204 0 0 chr9 101664686 101664735 -16197892 + L2 LINE L2 3255 3303 -10 2050 137 0 0 chr9 101664794 101665100 -16197527 + AluJb SINE Alu 1 306 -6 283 336 8 23 chr9 101665352 101665483 -16197144 - MER117 DNA MER1_type -1 196 68 1961 117 46 0 chr9 101665593 101665875 -16196752 + AluSx SINE Alu 1 295 -17 305 213 75 11 chr9 101665926 101666020 -16196607 + MLT1K LTR MaLR 11 110 -478 331 254 80 0 chr9 101666435 101666557 -16196070 + MIR SINE MIR 18 153 -63 2063 103 34 0 chr9 101666897 101667189 -16195438 - AluSx SINE Alu -10 302 1 2179 106 10 0 chr9 101668315 101668616 -16194011 + AluSx SINE Alu 1 304 -8 197 286 18 0 chr9 101668738 101668794 -16193833 + MIR SINE MIR 89 145 -63 477 242 13 38 chr9 101668882 101669039 -16193588 + MER103 DNA DNA 2 154 -12 2137 125 0 0 chr9 101669204 101669515 -16193112 + AluSx SINE Alu 1 311 -1 2332 100 0 0 chr9 101669598 101669908 -16192719 + AluSg SINE Alu 1 310 0 189 250 25 0 chr9 101670052 101670092 -16192535 - L2 LINE L2 -19 3253 3213 * 283 287 198 40 chr9 101670059 101670261 -16192366 - MIR SINE MIR -21 241 8 232 242 16 0 chr9 101671010 101671072 -16191555 - MIR SINE MIR -27 235 173 182 91 30 0 chr9 101671476 101671509 -16191118 + (CA)n Simple_repeat Simple_repeat 2 35 0 1212 143 5 42 chr9 101671902 101672118 -16190509 - AluJb SINE Alu -21 291 84 653 253 29 90 chr9 101672264 101672353 -16190274 - MIR SINE MIR 0 262 169 2145 128 0 0 chr9 101672353 101672658 -16189969 + AluSx SINE Alu 1 305 -7 653 253 29 90 chr9 101672658 101672845 -16189782 - MIR SINE MIR -93 169 3 1851 135 14 4 chr9 101672964 101673268 -16189359 + AluSx SINE Alu 1 307 0 731 291 87 12 chr9 101673672 101673913 -16188714 + MIR SINE MIR 2 260 -2 277 290 60 10 chr9 101673922 101674022 -16188605 - MIR SINE MIR -138 124 20 222 37 0 0 chr9 101674158 101674185 -16188442 + (CA)n Simple_repeat Simple_repeat 2 28 0 348 350 102 0 chr9 101674459 101674596 -16188031 + MIR3 SINE MIR 43 193 -15 1969 120 0 10 chr9 101674991 101675320 -16187307 + AluSx SINE Alu 1 312 0 217 317 37 66 chr9 101675502 101675745 -16186882 + L2 LINE L2 2679 2914 -400 1714 141 13 56 chr9 101676624 101676930 -16185697 + AluJo SINE Alu 6 298 -14 2250 122 0 0 chr9 101677161 101677473 -16185154 + AluSx SINE Alu 1 312 0 1855 106 3 73 chr9 101677851 101678181 -16184446 - AluSx SINE Alu 0 309 1 1762 148 0 24 chr9 101678436 101678733 -16183894 + AluJo SINE Alu 1 290 -22 1912 120 7 3 chr9 101678923 101679206 -16183421 + AluJb SINE Alu 1 284 -28 216 0 0 0 chr9 101679209 101679233 -16183394 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 316 291 35 56 chr9 101680442 101680614 -16182013 - MIR3 SINE MIR -17 191 29 208 347 0 31 chr9 101680722 101680820 -16181807 + MIR SINE MIR 59 145 -63 1501 189 7 40 chr9 101681234 101681367 -16181260 + AluJo SINE Alu 1 137 -175 2354 53 0 0 chr9 101681367 101681673 -16180954 + AluY SINE Alu 1 306 0 1501 189 7 40 chr9 101681673 101681835 -16180792 + AluJo SINE Alu 137 287 -25 189 107 0 0 chr9 101682321 101682349 -16180278 + (CA)n Simple_repeat Simple_repeat 1 28 0 743 275 16 45 chr9 101682381 101682628 -16179999 + MIR SINE MIR 23 262 0 369 302 73 69 chr9 101682722 101682967 -16179660 + L3 LINE CR1 1305 1550 -27 342 270 43 17 chr9 101683402 101683517 -16179110 - MIR SINE MIR -114 148 31 195 277 12 48 chr9 101686440 101686523 -16176104 + MIR SINE MIR 56 135 -127 680 309 26 13 chr9 101686729 101687114 -16175513 + L1MC4a LINE L1 4758 5192 -954 921 290 96 20 chr9 101687116 101687636 -16174991 + L1MC4a LINE L1 5255 5626 -538 1661 146 0 36 chr9 101687707 101687874 -16174753 - AluJo SINE Alu -16 296 124 185 65 32 0 chr9 101687874 101687905 -16174722 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 2077 92 0 34 chr9 101687905 101688197 -16174430 - AluSp SINE Alu -31 282 1 1661 146 0 36 chr9 101688197 101688330 -16174297 - AluJo SINE Alu -186 126 6 1688 179 37 0 chr9 101688606 101688786 -16173841 - AluJo SINE Alu -1 311 114 234 0 0 0 chr9 101688786 101688812 -16173815 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1688 179 37 0 chr9 101688812 101688927 -16173700 - AluJo SINE Alu -198 114 5 180 283 0 17 chr9 101689097 101689157 -16173470 + L2 LINE L2 3210 3268 -4 312 386 7 7 chr9 101689246 101689395 -16173232 + L2 LINE L2 2896 3044 -228 2075 96 4 4 chr9 101689725 101690006 -16172621 + AluSx SINE Alu 21 301 -11 397 342 27 16 chr9 101690008 101690195 -16172432 + MIR SINE MIR 48 236 -26 2292 113 0 0 chr9 101690274 101690585 -16172042 + AluSx SINE Alu 1 311 -1 216 0 0 0 chr9 101690620 101690644 -16171983 + (GAAA)n Simple_repeat Simple_repeat 2 25 0 1780 190 0 13 chr9 101690670 101690981 -16171646 + AluJo SINE Alu 1 307 -5 881 160 7 13 chr9 101690991 101691141 -16171486 + FRAM SINE Alu 1 148 -28 1801 156 7 3 chr9 101691862 101692157 -16170470 - AluSx SINE Alu -16 296 1 663 294 122 17 chr9 101692175 101692519 -16170108 + L2 LINE L2 1877 2256 -1058 747 336 62 42 chr9 101692522 101692753 -16169874 + L2 LINE L2 2588 2813 -459 1976 136 0 23 chr9 101692753 101693055 -16169572 - AluSx SINE Alu -17 295 1 747 336 62 42 chr9 101693055 101693492 -16169135 + L2 LINE L2 2813 3272 0 705 248 57 22 chr9 101693571 101693801 -16168826 - MIR SINE MIR -11 251 14 342 0 0 0 chr9 101694252 101694290 -16168337 + (GGGAA)n Simple_repeat Simple_repeat 2 39 0 607 226 97 26 chr9 101694290 101694485 -16168142 - LTR16A LTR ERVL -111 339 131 191 240 40 0 chr9 101694514 101694564 -16168063 - L2 LINE L2 -21 3292 3241 188 401 120 9 chr9 101694771 101694988 -16167639 - L2 LINE L2 -341 2973 2733 1035 272 65 6 chr9 101695246 101695569 -16167058 + LTR16A LTR ERVL 16 357 -93 570 43 75 0 chr9 101695569 101695663 -16166964 + CT-rich Low_complexity Low_complexity 1 101 0 361 242 33 8 chr9 101695685 101695805 -16166822 + LTR16A LTR ERVL 317 439 -11 588 167 15 8 chr9 101696286 101696418 -16166209 - MER53 DNA DNA 0 189 57 1927 168 0 7 chr9 101696608 101696917 -16165710 - AluJb SINE Alu -5 307 1 222 338 39 0 chr9 101697095 101697172 -16165455 + MIR SINE MIR 104 183 -79 226 254 17 0 chr9 101697227 101697286 -16165341 + L2 LINE L2 3208 3267 -5 1488 164 51 8 chr9 101697421 101697677 -16164950 - AluJb SINE Alu -16 296 30 1557 155 41 14 chr9 101698378 101698668 -16163959 - AluJb SINE Alu -14 298 1 746 172 64 36 chr9 101698772 101698954 -16163673 - MIR SINE MIR -40 222 34 417 299 66 30 chr9 101698977 101699174 -16163453 - MIR SINE MIR -36 226 23 924 220 0 0 chr9 101699174 101699347 -16163280 + FAM SINE Alu 1 173 -2 705 133 0 42 chr9 101699810 101699930 -16162697 - FRAM SINE Alu -5 171 57 2131 100 13 13 chr9 101700044 101700345 -16162282 - AluSg SINE Alu -8 302 2 1865 149 3 13 chr9 101700835 101701137 -16161490 - AluSx SINE Alu -13 299 1 213 39 0 0 chr9 101701186 101701212 -16161415 + (TTCTCC)n Simple_repeat Simple_repeat 3 28 0 572 261 14 7 chr9 101702580 101702718 -16159909 + MIR SINE MIR 10 148 -114 2411 61 0 3 chr9 101703318 101703615 -16159012 + AluY SINE Alu 1 296 -15 641 183 46 30 chr9 101703715 101703846 -16158781 - FLAM_C SINE Alu 0 133 1 241 278 42 14 chr9 101704168 101704240 -16158387 + MER5B DNA MER1_type 47 120 -58 432 317 113 30 chr9 101704958 101705188 -16157439 - MIR SINE MIR 0 262 14 1203 60 0 0 chr9 101705363 101705514 -16157113 + AluSg/x SINE Alu 162 312 0 222 281 0 45 chr9 101705858 101705947 -16156680 + GA-rich Low_complexity Low_complexity 2 86 0 201 178 0 0 chr9 101705969 101706014 -16156613 + (CAGAGA)n Simple_repeat Simple_repeat 2 46 0 220 290 192 47 chr9 101707097 101707290 -16155337 - L2 LINE L2 -27 3245 3025 279 296 84 20 chr9 101707425 101707628 -16154999 + L2 LINE L2 2287 2502 -812 578 295 87 46 chr9 101707652 101708261 -16154366 - L2 LINE L2 -109 3163 2522 209 152 22 43 chr9 101708723 101708769 -16153858 + MIR SINE MIR 115 159 -103 272 293 274 0 chr9 101709554 101709741 -16152886 + MIR SINE MIR 16 249 -13 183 365 0 31 chr9 101709932 101710028 -16152599 - MIR SINE MIR -67 141 49 451 275 117 50 chr9 101710406 101710582 -16152045 + MIR SINE MIR 5 168 -94 2039 134 7 3 chr9 101710582 101710889 -16151738 + AluSx SINE Alu 1 308 -4 2131 111 0 7 chr9 101710890 101711206 -16151421 + AluSp SINE Alu 2 313 0 451 275 117 50 chr9 101711206 101711267 -16151360 + MIR SINE MIR 167 260 -2 285 276 61 0 chr9 101711597 101711695 -16150932 - MIR SINE MIR -63 145 42 237 306 51 0 chr9 101711697 101711795 -16150832 - MIR3 SINE MIR -38 170 68 475 327 25 40 chr9 101711818 101711834 -16150793 - L2 LINE L2 0 3272 3257 324 70 0 0 chr9 101711834 101711877 -16150750 + (TTCA)n Simple_repeat Simple_repeat 1 43 0 475 327 25 40 chr9 101711877 101712062 -16150565 - L2 LINE L2 -15 3257 3074 247 231 17 27 chr9 101712809 101712913 -16149714 + L2 LINE L2 2905 3006 -266 330 320 233 0 chr9 101712913 101713316 -16149311 - L2 LINE L2 0 3313 2817 1961 135 7 0 chr9 101713430 101713719 -16148908 + AluJo SINE Alu 1 291 -21 584 214 63 38 chr9 101713725 101713884 -16148743 + MLT1A2 LTR MaLR 1 163 -211 1882 132 0 7 chr9 101713890 101714177 -16148450 + AluJb SINE Alu 28 312 0 1263 201 4 28 chr9 101714180 101714434 -16148193 + AluJo SINE Alu 1 248 -64 1963 144 0 10 chr9 101714439 101714738 -16147889 - AluSx SINE Alu -16 296 1 191 259 17 17 chr9 101714842 101714900 -16147727 + L2 LINE L2 3015 3072 -200 229 315 55 47 chr9 101715638 101715765 -16146862 + L2 LINE L2 3068 3195 -77 736 346 121 20 chr9 101717653 101718216 -16144411 - L2 LINE L2 0 3272 2636 463 373 20 5 chr9 101718256 101718460 -16144167 - MIR SINE MIR -13 249 43 2342 75 0 10 chr9 101718538 101718844 -16143783 + AluSx SINE Alu 4 306 -6 420 313 46 20 chr9 101718870 101719065 -16143562 - L2 LINE L2 -156 3116 2917 615 336 52 0 chr9 101719868 101720100 -16142527 + MIR SINE MIR 5 248 -14 236 203 47 47 chr9 101720171 101720235 -16142392 - MIR SINE MIR -63 145 82 326 340 19 64 chr9 101720282 101720438 -16142189 + MIR3 SINE MIR 17 154 -54 540 311 15 11 chr9 101720553 101720775 -16141852 - L1M1 LINE L1 -304 5817 5614 180 322 174 16 chr9 101720835 101720956 -16141671 - L2 LINE L2 -1 3271 3132 707 309 150 27 chr9 101721008 101721449 -16141178 - L2 LINE L2 -276 3037 2651 2130 130 0 0 chr9 101721449 101721748 -16140879 + AluSx SINE Alu 1 299 -13 707 309 150 27 chr9 101721748 101722031 -16140596 - L2 LINE L2 -662 2651 2227 242 349 89 12 chr9 101722460 101722629 -16139998 - L2 LINE L2 -189 3083 2902 1507 164 55 0 chr9 101722662 101722940 -16139687 - AluSx SINE Alu 0 304 13 817 284 28 0 chr9 101723202 101723420 -16139207 + MIR SINE MIR 3 226 -36 2299 88 7 0 chr9 101723420 101723728 -16138899 + AluSp SINE Alu 1 310 -3 228 156 10 62 chr9 101723822 101723918 -16138709 + CT-rich Low_complexity Low_complexity 1 91 0 323 325 71 40 chr9 101724093 101724219 -16138408 + L1MC4 LINE L1 6585 6714 -1328 305 193 71 79 chr9 101724096 101724236 -16138391 - L1MCa LINE L1 -4363 2063 1925 * 2539 36 7 3 chr9 101724236 101724540 -16138087 + AluSq SINE Alu 2 306 -7 353 176 29 0 chr9 101725484 101725552 -16137075 + MIR SINE MIR 79 148 -114 245 327 55 27 chr9 101727100 101727210 -16135417 - MIR SINE MIR -80 128 16 391 337 60 6 chr9 101728630 101728796 -16133831 - MIR SINE MIR -28 234 60 236 277 46 0 chr9 101728994 101729059 -16133568 - MIR SINE MIR -74 188 121 2150 115 0 3 chr9 101729442 101729738 -16132889 - AluSq SINE Alu -18 295 1 681 247 52 11 chr9 101729876 101730050 -16132577 + MIR SINE MIR 4 184 -78 314 287 74 19 chr9 101830281 101830389 -16032238 - L2 LINE L2 -3 3310 3197 796 279 98 43 chr9 101830798 101831218 -16031409 + L2 LINE L2 2870 3312 -1 563 193 9 28 chr9 101831344 101831357 -16031270 + MER5B DNA MER1_type 65 77 -101 2066 120 3 0 chr9 101831357 101831656 -16030971 - AluSx SINE Alu -12 300 1 563 193 9 28 chr9 101831656 101831751 -16030876 + MER5B DNA MER1_type 77 171 -7 848 247 16 65 chr9 101832377 101832624 -16030003 - MIR SINE MIR -27 235 1 648 286 184 20 chr9 101832871 101833262 -16029365 - L2 LINE L2 -494 2820 2366 332 212 118 35 chr9 101833779 101833864 -16028763 + MER5A DNA MER1_type 15 106 -83 371 248 147 9 chr9 101833900 101834009 -16028618 + MIR SINE MIR 18 141 -121 834 198 17 6 chr9 101834015 101834187 -16028440 + MER5B DNA MER1_type 3 176 -2 585 295 40 20 chr9 101834203 101834403 -16028224 + MIR SINE MIR 19 222 -40 334 282 40 60 chr9 101834829 101834978 -16027649 - MIR3 SINE MIR -3 205 60 450 283 84 98 chr9 101836189 101836546 -16026081 - L2 LINE L2 0 3272 2921 212 326 33 22 chr9 101836691 101836783 -16025844 - MIR SINE MIR -168 94 2 199 204 111 0 chr9 101837073 101837127 -16025500 - MIR SINE MIR -64 144 85 292 275 174 27 chr9 101837243 101837392 -16025235 - MIR SINE MIR -51 211 41 318 130 0 0 chr9 101837531 101837577 -16025050 + Alu SINE Alu 1 46 -262 1923 150 3 0 chr9 101837936 101838236 -16024391 + AluSx SINE Alu 1 301 -11 315 214 71 0 chr9 101838267 101838337 -16024290 - L2 LINE L2 -569 2745 2671 687 211 45 0 chr9 101838377 101838533 -16024094 - L1ME4a LINE L1 -4 6117 5955 701 246 30 39 chr9 101838640 101838843 -16023784 + MIR SINE MIR 33 233 -29 360 0 0 0 chr9 101839221 101839261 -16023366 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 397 312 23 35 chr9 101839270 101839443 -16023184 - L2 LINE L2 -26 3287 3117 202 306 51 31 chr9 101839961 101840059 -16022568 + L2 LINE L2 2961 3060 -212 284 211 241 23 chr9 101840203 101840336 -16022291 - L2 LINE L2 -246 3067 2906 233 343 124 20 chr9 101840428 101840859 -16021768 - L2 LINE L2 -5 3267 2713 821 201 34 60 chr9 101840963 101841135 -16021492 - AluSg/x SINE Alu 0 312 146 441 0 0 0 chr9 101841135 101841184 -16021443 + (TA)n Simple_repeat Simple_repeat 1 49 0 821 201 34 60 chr9 101841184 101841245 -16021382 - AluSg/x SINE Alu -166 146 85 380 314 43 27 chr9 101841447 101841632 -16020995 - MER5A DNA MER1_type -1 188 1 2779 151 51 2 chr9 101842005 101842514 -16020113 + L1MB3 LINE L1 5649 6182 -1 2180 119 0 16 chr9 101842536 101842854 -16019773 + AluSq SINE Alu 1 313 0 1996 146 3 10 chr9 101842871 101843180 -16019447 + AluJb SINE Alu 6 312 0 231 141 14 42 chr9 101843854 101843925 -16018702 + (CGG)n Simple_repeat Simple_repeat 2 70 0 213 318 9 19 chr9 101843994 101844101 -16018526 + G-rich Low_complexity Low_complexity 44 149 0 255 297 5 97 chr9 101844561 101844746 -16017881 + L2 LINE L2 2998 3165 -107 445 266 82 6 chr9 101844836 101844994 -16017633 + MIR SINE MIR 30 199 -63 237 108 0 0 chr9 101845064 101845101 -16017526 + (CCA)n Simple_repeat Simple_repeat 3 39 0 217 350 111 8 chr9 101846012 101846129 -16016498 - L2 LINE L2 -1 3271 3143 831 180 118 14 chr9 101846249 101846460 -16016167 + L2 LINE L2 3081 3313 0 285 317 161 27 chr9 101846517 101846741 -16015886 - L2 LINE L2 -213 3059 2806 273 169 51 0 chr9 101846824 101846883 -16015744 + MIR3 SINE MIR 94 155 -53 1125 160 0 17 chr9 101847144 101847325 -16015302 + FRAM SINE Alu 1 173 -3 242 209 217 52 chr9 101847367 101847482 -16015145 + L2 LINE L2 3176 3309 -4 192 234 117 32 chr9 101847670 101847764 -16014863 + MIR3 SINE MIR 96 197 -11 2201 122 0 34 chr9 101848058 101848378 -16014249 - AluSx SINE Alu -3 309 1 780 289 25 0 chr9 101848426 101848630 -16013997 - MIR SINE MIR -1 261 53 302 368 52 0 chr9 101848664 101848800 -16013827 - L2 LINE L2 -28 3244 3102 927 123 0 0 chr9 101849765 101849887 -16012740 + AluSg/x SINE Alu 172 293 -17 521 275 12 38 chr9 101849888 101850048 -16012579 - MIR SINE MIR -44 218 63 623 265 61 35 chr9 101851181 101851411 -16011216 + MIR SINE MIR 24 259 -3 247 298 71 0 chr9 101851541 101851625 -16011002 - L2 LINE L2 -1 3312 3223 2397 99 0 0 chr9 101851820 101852124 -16010503 - AluSx SINE Alu -8 304 1 277 194 333 28 chr9 101852286 101852430 -16010197 + MIR SINE MIR 69 256 -6 2263 122 0 0 chr9 101853276 101853572 -16009055 - AluSg SINE Alu -14 296 1 893 298 43 35 chr9 101853599 101853995 -16008632 - MLT1I LTR MaLR -8 401 3 202 182 0 36 chr9 101853997 101854052 -16008575 + (TA)n Simple_repeat Simple_repeat 1 53 0 1779 141 30 34 chr9 101854052 101854350 -16008277 - AluJb SINE Alu -14 298 2 595 266 157 43 chr9 101854413 101854577 -16008050 - L1MC4a LINE L1 -1935 5873 5729 2231 125 7 0 chr9 101854577 101854880 -16007747 - AluSx SINE Alu -7 305 1 595 266 157 43 chr9 101854880 101855244 -16007383 - L1MC4a LINE L1 -2079 5729 5285 460 282 151 24 chr9 101856000 101856379 -16006248 - L1ME4a LINE L1 -5 6116 5654 1826 163 6 34 chr9 101856379 101856699 -16005928 - AluJo SINE Alu 0 312 2 460 282 151 24 chr9 101856699 101856829 -16005798 - L1ME4a LINE L1 -467 5654 5542 713 156 0 64 chr9 101857114 101857255 -16005372 - FLAM_C SINE Alu 0 133 2 2382 91 7 0 chr9 101857376 101857672 -16004955 - AluY SINE Alu -13 298 1 1880 124 61 32 chr9 101857772 101858118 -16004509 + L1M4 LINE L1 5399 5754 -430 298 293 162 31 chr9 101858278 101858500 -16004127 + MIR SINE MIR 2 252 -10 1037 261 72 43 chr9 101858809 101859419 -16003208 - L1MEc LINE L1 -2916 3299 2672 326 341 68 40 chr9 101859558 101859807 -16002820 - L1MEc LINE L1 -4238 2158 1903 666 292 116 7 chr9 101859963 101860370 -16002257 - L1MEc LINE L1 -4717 1679 1229 410 118 29 0 chr9 101860661 101860729 -16001898 - AluJ/FLAM SINE Alu -241 71 2 243 274 16 0 chr9 101860794 101860856 -16001771 + Charlie8 DNA MER1_type 212 274 -2143 264 193 53 0 chr9 101860920 101860977 -16001650 + MIR SINE MIR 81 140 -68 1104 202 43 0 chr9 101860991 101861224 -16001403 + L1MB7 LINE L1 5856 6098 -86 1226 148 72 51 chr9 101861224 101861254 -16001373 - Tigger3(Golem) DNA MER2_type 0 3038 3010 2481 93 0 0 chr9 101861254 101861556 -16001071 + AluSx SINE Alu 1 302 -10 1226 148 72 51 chr9 101861556 101861762 -16000865 - Tigger3(Golem) DNA MER2_type -28 3010 2797 268 214 0 0 chr9 101864858 101864922 -15997705 - MIR3 SINE MIR -41 167 103 286 319 64 5 chr9 101865284 101865472 -15997155 + L2 LINE L2 1932 2130 -1184 2373 107 0 3 chr9 101865627 101865935 -15996692 - AluSx SINE Alu 0 312 6 230 279 0 68 chr9 101868360 101868507 -15994120 + GA-rich Low_complexity Low_complexity 2 138 0 228 35 0 0 chr9 101868702 101868731 -15993896 + (CCG)n Simple_repeat Simple_repeat 3 31 0 216 283 35 48 chr9 101868976 101869121 -15993506 + MIR SINE MIR 1 143 -65 208 303 0 13 chr9 101870251 101870327 -15992300 + C-rich Low_complexity Low_complexity 3 77 0 523 218 0 30 chr9 101870710 101870843 -15991784 + MIR3 SINE MIR 12 140 -68 214 327 64 24 chr9 101871146 101871300 -15991327 - MIR SINE MIR -51 157 6 375 296 136 6 chr9 101871695 101871857 -15990770 + MIR SINE MIR 74 256 -6 1331 180 25 46 chr9 101872034 101872361 -15990266 + MER33 DNA MER1_type 1 320 -4 642 249 26 57 chr9 101872943 101873172 -15989455 - L2 LINE L2 0 3313 3092 400 223 107 0 chr9 101873961 101874064 -15988563 + MIR SINE MIR 30 143 -65 247 167 181 14 chr9 101874474 101874546 -15988081 + MIR3 SINE MIR 13 96 -112 637 236 19 31 chr9 101874963 101875124 -15987503 - MIR SINE MIR -72 190 32 321 329 42 21 chr9 101875885 101876028 -15986599 + MIR SINE MIR 53 198 -64 850 296 8 35 chr9 101876196 101876456 -15986171 + MIR SINE MIR 9 261 -1 289 292 197 7 chr9 101876608 101876745 -15985882 + MIR3 SINE MIR 35 197 -11 279 344 0 0 chr9 101877200 101877296 -15985331 - MIR SINE MIR -77 185 90 1977 157 3 0 chr9 101877515 101877815 -15984812 - AluJb SINE Alu -11 301 1 546 312 78 55 chr9 101877957 101878482 -15984145 - L1MC4a LINE L1 -1946 5862 5326 2496 71 0 0 chr9 101878486 101878781 -15983846 - AluSg SINE Alu -15 295 1 2203 128 6 6 chr9 101879155 101879467 -15983160 - AluSx SINE Alu 0 312 1 371 299 34 20 chr9 101879693 101879840 -15982787 - MIR3 SINE MIR -11 197 49 230 271 53 38 chr9 101880553 101880686 -15981941 + L2 LINE L2 2902 3036 -236 743 236 22 73 chr9 101880909 101881184 -15981443 + MIR SINE MIR 1 261 -1 389 208 88 3 chr9 101881548 101881685 -15980942 - L1ME3A LINE L1 -58 6106 5940 1918 137 4 0 chr9 101882120 101882382 -15980245 + AluSx SINE Alu 6 268 -44 234 150 25 0 chr9 101882382 101882422 -15980205 + Alu SINE Alu 235 275 -28 232 246 87 0 chr9 101882453 101882522 -15980105 - L2 LINE L2 -569 2745 2671 451 311 92 0 chr9 101882542 101882738 -15979889 - MIR SINE MIR -42 220 7 227 271 0 17 chr9 101883517 101883576 -15979051 + GA-rich Low_complexity Low_complexity 3 60 0 804 186 81 23 chr9 101883663 101883835 -15978792 - MER58A DNA MER1_type 0 224 43 2179 116 3 0 chr9 101883837 101884157 -15978470 + AluSp SINE Alu 1 313 0 2208 158 53 11 chr9 101884160 101884587 -15978040 + L1MB8 LINE L1 5385 5832 -346 2223 132 0 0 chr9 101884587 101884897 -15977730 + AluSx SINE Alu 1 310 -2 1424 228 69 19 chr9 101884898 101885359 -15977268 + HAL1 LINE L1 1284 1767 -740 * 1466 170 81 52 chr9 101885343 101885593 -15977034 + L1MB8 LINE L1 5765 6034 -144 2294 88 0 36 chr9 101885593 101885899 -15976728 + AluSc SINE Alu 1 295 -14 1466 170 81 52 chr9 101885899 101886049 -15976578 + L1MB8 LINE L1 6034 6178 0 396 210 127 140 chr9 101886113 101886214 -15976413 + MIR SINE MIR 37 138 -124 761 143 8 16 chr9 101886214 101886340 -15976287 + FLAM_C SINE Alu 1 125 -8 396 210 127 140 chr9 101886340 101886467 -15976160 + MIR SINE MIR 138 262 0 * 411 298 16 64 chr9 101886434 101886622 -15976005 - MIR SINE MIR -83 179 1 2039 115 26 64 chr9 101886730 101886772 -15975855 - THE1C LTR MaLR 0 375 333 2488 86 0 0 chr9 101886772 101887075 -15975552 + AluSg SINE Alu 1 303 -7 2039 115 26 64 chr9 101887075 101887422 -15975205 - THE1C LTR MaLR -42 333 1 300 323 71 33 chr9 101888332 101889041 -15973586 - L2 LINE L2 0 3313 2325 230 263 24 142 chr9 101890589 101890794 -15971833 + L2 LINE L2 2995 3175 -97 185 343 37 45 chr9 101890820 101890954 -15971673 - MIR SINE MIR -15 247 115 341 242 161 57 chr9 101891671 101891919 -15970708 + L2 LINE L2 2966 3239 -33 267 344 70 0 chr9 101892090 101892218 -15970409 - MIR SINE MIR -95 167 31 207 338 101 7 chr9 101892492 101892640 -15969987 + MIR SINE MIR 100 261 -1 242 246 0 46 chr9 101893382 101893447 -15969180 - MIR SINE MIR -74 188 127 327 297 96 50 chr9 101893834 101893897 -15968730 - L2 LINE L2 -169 3103 3044 4315 82 11 0 chr9 101893897 101894445 -15968182 - MER41A LTR ERV1 0 554 1 327 297 96 50 chr9 101894445 101894620 -15968007 - L2 LINE L2 -228 3044 2854 2107 148 10 0 chr9 101895107 101895405 -15967222 + AluJb SINE Alu 3 303 -9 296 315 11 11 chr9 101895415 101895507 -15967120 + MIR SINE MIR 39 130 -78 329 250 19 19 chr9 101895837 101895941 -15966686 + (TCTCTG)n Simple_repeat Simple_repeat 6 109 0 186 208 0 0 chr9 101895990 101896043 -15966584 + (TCTCTG)n Simple_repeat Simple_repeat 4 56 0 214 288 164 34 chr9 101896589 101896881 -15965746 + L2 LINE L2 2836 3165 -107 195 260 135 21 chr9 101897384 101897480 -15965147 + MIR3 SINE MIR 87 193 -15 422 219 55 75 chr9 101897708 101897787 -15964840 + MIR SINE MIR 14 90 -172 674 215 177 0 chr9 101897787 101897973 -15964654 - MER20 DNA MER1_type 0 219 1 422 219 55 75 chr9 101897973 101898039 -15964588 + MIR SINE MIR 90 156 -106 485 286 29 41 chr9 101898062 101898233 -15964394 - MIR SINE MIR -21 241 73 2830 73 22 3 chr9 101898238 101898606 -15964021 - THE1C LTR MaLR 0 375 1 239 227 93 13 chr9 101898669 101898744 -15963883 + MIR SINE MIR 180 260 -2 888 120 0 8 chr9 101898840 101898973 -15963654 + FLAM_C SINE Alu 2 133 0 190 306 0 0 chr9 101899036 101899108 -15963519 - MIR SINE MIR -59 149 78 1085 243 35 20 chr9 101899454 101899709 -15962918 + MIR SINE MIR 4 262 0 337 150 0 0 chr9 101899718 101899778 -15962849 - Alu SINE Alu -5 297 238 1161 135 18 0 chr9 101899878 101900048 -15962579 + AluSg/x SINE Alu 130 302 -10 669 156 0 0 chr9 101900048 101900144 -15962483 - AluJ/FLAM SINE Alu -213 99 4 1625 183 26 0 chr9 101900503 101900771 -15961856 + AluJo SINE Alu 1 275 -37 287 355 45 19 chr9 101900823 101900978 -15961649 - L2 LINE L2 -468 2846 2688 2524 75 0 13 chr9 101901499 101901807 -15960820 - AluY SINE Alu -7 304 1 22 0 0 0 chr9 101902992 101903014 -15959613 + AT_rich Low_complexity Low_complexity 1 22 0 2155 125 3 0 chr9 101903557 101903854 -15958773 + AluSx SINE Alu 1 298 -14 546 280 40 61 chr9 101903975 101904023 -15958604 + L1ME4a LINE L1 5534 5581 -540 2299 84 40 3 chr9 101904023 101904319 -15958308 + AluY SINE Alu 2 308 -3 546 280 40 61 chr9 101904319 101904569 -15958058 + L1ME4a LINE L1 5581 5825 -296 2278 110 0 7 chr9 101904569 101904877 -15957750 + AluSx SINE Alu 1 306 -6 546 280 40 61 chr9 101904877 101904973 -15957654 + L1ME4a LINE L1 5825 5921 -200 564 293 98 16 chr9 101905075 101905321 -15957306 + MLT1K LTR MaLR 2 267 -321 222 184 0 0 chr9 101905887 101905925 -15956702 + L2 LINE L2 3190 3227 -86 188 268 18 36 chr9 101905992 101906048 -15956579 + L2 LINE L2 3232 3286 -27 181 277 200 0 chr9 101906035 101906100 -15956527 - L2 LINE L2 -13 3300 3223 * 1041 315 168 42 chr9 101906118 101906859 -15955768 - L1M4 LINE L1 -1611 4535 3692 2335 90 13 3 chr9 101906859 101907169 -15955458 - AluSp SINE Alu 0 313 1 1041 315 168 42 chr9 101907169 101907195 -15955432 - L1M4 LINE L1 -2454 3692 3671 21 0 0 0 chr9 101907508 101907529 -15955098 + AT_rich Low_complexity Low_complexity 1 21 0 231 376 12 0 chr9 101907762 101907847 -15954780 - MIR SINE MIR -103 105 20 200 233 137 41 chr9 101908031 101908104 -15954523 - MIR SINE MIR -70 192 113 510 289 57 44 chr9 101908110 101908338 -15954289 + MIR SINE MIR 32 262 0 252 344 108 57 chr9 101908519 101908891 -15953736 + L2 LINE L2 2462 2852 -462 183 239 97 124 chr9 101909574 101909662 -15952965 + MIR SINE MIR 122 208 -54 2325 86 13 0 chr9 101909662 101909965 -15952662 + AluY SINE Alu 1 307 -4 183 239 97 124 chr9 101909965 101909989 -15952638 + MIR SINE MIR 208 231 -31 224 302 34 68 chr9 101910062 101910267 -15952360 + L2 LINE L2 2718 2915 -399 471 272 64 0 chr9 101910304 101910429 -15952198 + MIR SINE MIR 6 138 -124 211 309 0 0 chr9 101910442 101910497 -15952130 + (TG)n Simple_repeat Simple_repeat 2 56 0 339 236 0 91 chr9 101910497 101910607 -15952020 + L1MC4 LINE L1 6604 6703 -1339 437 260 10 0 chr9 101910615 101910719 -15951908 + MIR SINE MIR 158 262 0 249 388 12 0 chr9 101910757 101910837 -15951790 + L2 LINE L2 3106 3186 -86 388 279 39 90 chr9 101911966 101912199 -15950428 - L2 LINE L2 0 3313 3093 405 86 0 0 chr9 101912333 101912391 -15950236 + (TTCC)n Simple_repeat Simple_repeat 3 60 0 1427 201 0 8 chr9 101912393 101912656 -15949971 - AluJo SINE Alu 0 312 52 225 363 194 25 chr9 101912676 101912836 -15949791 - L2 LINE L2 -8 3264 3078 202 300 0 0 chr9 101912897 101912947 -15949680 - MIR SINE MIR -67 141 92 284 308 120 0 chr9 101913113 101913230 -15949397 - MIR SINE MIR -67 195 65 358 267 20 82 chr9 101913282 101913428 -15949199 - MIR SINE MIR -124 138 2 314 258 221 20 chr9 101913863 101914065 -15948562 + MIR SINE MIR 25 257 -5 2612 180 73 19 chr9 101914169 101914792 -15947835 + L1ME1 LINE L1 5521 6334 0 611 263 100 21 chr9 101914998 101915188 -15947439 - MIR SINE MIR -30 232 28 357 279 95 72 chr9 101915220 101915442 -15947185 - L2 LINE L2 -184 3088 2862 189 0 0 0 chr9 101915646 101915667 -15946960 + (TGAA)n Simple_repeat Simple_repeat 1 21 0 900 174 0 19 chr9 101915683 101915844 -15946783 - AluJb SINE Alu -23 289 132 236 259 12 0 chr9 101915982 101916063 -15946564 + GA-rich Low_complexity Low_complexity 2 83 0 311 379 85 18 chr9 101916063 101916556 -15946071 - L2 LINE L2 -641 2673 2148 191 262 164 0 chr9 101916723 101916784 -15945843 - L2 LINE L2 0 3272 3202 1792 174 0 49 chr9 101917067 101917394 -15945233 + AluJb SINE Alu 1 311 -1 458 208 0 134 chr9 101917497 101917646 -15944981 + L2 LINE L2 3143 3271 -1 2726 99 6 3 chr9 101917697 101918060 -15944567 - THE1B LTR MaLR 0 364 1 323 235 88 39 chr9 101918184 101918286 -15944341 + MIR3 SINE MIR 15 121 -87 2269 77 24 27 chr9 101918847 101919144 -15943483 - AluSc SINE Alu -13 296 1 1214 118 24 0 chr9 101919144 101919313 -15943314 - AluSg/x SINE Alu -9 301 129 331 310 163 0 chr9 101919389 101919484 -15943143 + MIR SINE MIR 49 127 -135 2273 182 80 23 chr9 101919484 101919962 -15942665 - MLT1D LTR MaLR 0 505 1 331 310 163 0 chr9 101919962 101920050 -15942577 + MIR SINE MIR 127 262 0 460 321 0 15 chr9 101920284 101920418 -15942209 - MIR SINE MIR -60 148 17 711 230 12 51 chr9 101920523 101920562 -15942065 - MIR SINE MIR 0 262 223 3220 148 14 14 chr9 101920562 101921082 -15941545 - MLT2B1 LTR ERVL 0 520 1 711 230 12 51 chr9 101921082 101921239 -15941388 - MIR SINE MIR -39 223 76 648 257 53 61 chr9 101921679 101921807 -15940820 + MIR SINE MIR 20 147 -115 2288 98 10 3 chr9 101921807 101922112 -15940515 + AluSx SINE Alu 1 307 -5 648 257 53 61 chr9 101922112 101922228 -15940399 + MIR SINE MIR 147 262 0 1210 58 13 0 chr9 101922625 101922780 -15939847 + L1PA7 LINE L1 5998 6154 0 203 261 130 43 chr9 101922919 101923011 -15939616 + MIR SINE MIR 20 119 -89 273 304 0 22 chr9 101923024 101923116 -15939511 + MIR SINE MIR 20 109 -153 603 319 166 43 chr9 101923119 101923737 -15938890 + L2 LINE L2 1997 2538 -734 1816 127 38 57 chr9 101923737 101924051 -15938576 - AluJo SINE Alu -4 308 1 603 319 166 43 chr9 101924051 101924556 -15938071 + L2 LINE L2 2538 3261 -11 324 312 64 0 chr9 101924627 101924736 -15937891 - L2 LINE L2 -7 3265 3150 213 159 0 0 chr9 101925223 101925267 -15937360 + (TTAGGG)n Simple_repeat Simple_repeat 2 45 0 273 232 18 0 chr9 101925372 101925428 -15937199 - L3 LINE CR1 -4 1573 1517 614 210 204 19 chr9 101925588 101925750 -15936877 + MIR SINE MIR 59 250 -12 729 293 42 73 chr9 101926686 101927095 -15935532 - L2 LINE L2 0 3313 2918 252 231 15 0 chr9 101927370 101927435 -15935192 - MER4-int LTR ERV1 -5438 1160 1095 2642 36 0 13 chr9 101927623 101927928 -15934699 + AluY SINE Alu 1 301 -10 494 219 0 0 chr9 101928136 101928241 -15934386 + MER103 DNA DNA 1 105 -61 303 295 62 9 chr9 101928243 101928355 -15934272 + L2 LINE L2 3117 3234 -79 2195 121 3 3 chr9 101928388 101928695 -15933932 + AluSg SINE Alu 1 307 -3 899 242 325 0 chr9 101928718 101929223 -15933404 - LTR50 LTR ERVL -111 684 16 2096 120 0 0 chr9 101929223 101929499 -15933128 - AluSq SINE Alu -13 300 25 798 191 0 0 chr9 101929869 101929995 -15932632 + FLAM_A SINE Alu 1 126 -7 2121 114 4 0 chr9 101929997 101930297 -15932330 + AluSx SINE Alu 1 301 0 925 260 21 41 chr9 101930324 101930663 -15931964 - ERVL LTR ERVL -321 5443 5112 344 343 111 37 chr9 101930749 101931220 -15931407 - L2 LINE L2 -143 3129 2615 615 218 52 81 chr9 101931220 101931431 -15931196 + MIR3 SINE MIR 2 206 -2 426 217 217 54 chr9 101931953 101932065 -15930562 + MER112 DNA MER1_type 4 96 -164 2489 103 0 0 chr9 101932065 101932376 -15930251 - AluSx SINE Alu -1 311 1 426 217 217 54 chr9 101932376 101932484 -15930143 + MER112 DNA MER1_type 96 260 0 461 253 83 70 chr9 101932510 101932739 -15929888 + L2 LINE L2 3032 3263 -9 220 230 186 35 chr9 101933152 101933265 -15929362 - MIR SINE MIR -63 145 16 676 313 18 18 chr9 101933433 101933657 -15928970 + MIR SINE MIR 7 230 -32 280 274 91 87 chr9 101934220 101934258 -15928369 - MIR SINE MIR -34 228 192 2372 100 0 0 chr9 101934258 101934557 -15928070 + AluSx SINE Alu 1 299 -13 280 274 91 87 chr9 101934557 101934726 -15927901 - MIR SINE MIR -70 192 20 296 259 62 0 chr9 101934795 101934876 -15927751 + L2 LINE L2 3186 3271 -1 331 223 130 45 chr9 101935906 101936065 -15926562 - MIR SINE MIR -62 146 12 424 295 33 16 chr9 101936217 101936400 -15926227 + L1ME4a LINE L1 5707 5892 -229 901 228 88 9 chr9 101936402 101936466 -15926161 - MIR SINE MIR 0 262 204 204 40 0 0 chr9 101936466 101936491 -15926136 + (TTTTA)n Simple_repeat Simple_repeat 3 27 0 901 228 88 9 chr9 101936491 101936641 -15925986 - MIR SINE MIR -58 204 31 2492 70 0 10 chr9 101936845 101937012 -15925615 - AluY SINE Alu -12 299 135 2456 59 3 16 chr9 101937012 101937315 -15925312 - AluY SINE Alu -12 299 1 2492 70 0 10 chr9 101937315 101937449 -15925178 - AluY SINE Alu -176 135 1 434 293 7 33 chr9 101937509 101937659 -15924968 - MIR3 SINE MIR -61 147 2 538 306 29 6 chr9 101937996 101938166 -15924461 - MIR SINE MIR -88 174 1 618 262 24 79 chr9 101938707 101938959 -15923668 + MIR SINE MIR 16 253 -9 409 235 112 35 chr9 101940021 101940191 -15922436 + MIR SINE MIR 12 194 -68 2278 118 0 0 chr9 101940704 101941001 -15921626 + AluSx SINE Alu 3 299 -13 1442 164 35 31 chr9 101941106 101941393 -15921234 + AluJo SINE Alu 1 288 -24 2597 63 0 0 chr9 101941393 101941695 -15920932 - AluY SINE Alu -9 302 1 205 263 202 0 chr9 101943153 101943252 -15919375 + MIR SINE MIR 30 148 -114 264 281 116 16 chr9 101943869 101943990 -15918637 - MIR SINE MIR -128 134 2 333 295 240 10 chr9 101944045 101944245 -15918382 - MIR SINE MIR -15 247 2 200 329 59 0 chr9 101944719 101944804 -15917823 - L2 LINE L2 0 3313 3224 2472 75 0 0 chr9 101945095 101945388 -15917239 + AluSc SINE Alu 2 294 -15 762 256 114 10 chr9 101946043 101946332 -15916295 - L2 LINE L2 0 3313 2995 322 306 51 0 chr9 101946411 101946509 -15916118 - L2 LINE L2 -36 3236 3134 2306 104 0 3 chr9 101946527 101946824 -15915803 + AluSx SINE Alu 1 296 -16 3192 173 92 3 chr9 101946990 101947656 -15914971 - L1MC3 LINE L1 -10 7775 7051 1433 191 59 7 chr9 101947776 101948048 -15914579 - AluJb SINE Alu -26 286 1 2398 85 3 0 chr9 101948125 101948419 -15914208 - AluSc SINE Alu -13 296 2 22 0 0 0 chr9 101948426 101948448 -15914179 + AT_rich Low_complexity Low_complexity 1 22 0 340 307 130 31 chr9 101948528 101948720 -15913907 - L1ME4a LINE L1 -115 6006 5796 219 151 283 0 chr9 101948744 101948797 -15913830 + L2 LINE L2 3246 3313 0 235 221 15 29 chr9 101948878 101948946 -15913681 - L1ME4a LINE L1 -457 5664 5598 336 365 82 0 chr9 101950440 101950708 -15911919 + L1ME2 LINE L1 5649 5940 -224 464 321 18 12 chr9 101950949 101951117 -15911510 + MIR SINE MIR 20 188 -74 453 254 115 24 chr9 101951891 101952056 -15910571 + MER5A DNA MER1_type 7 186 -3 258 251 100 0 chr9 101952113 101952214 -15910413 - MIR SINE MIR -62 200 81 1389 34 0 34 chr9 101952250 101952429 -15910198 + MER107 DNA MER1_type 25 197 0 2275 115 0 0 chr9 101952545 101952841 -15909786 + AluSx SINE Alu 1 296 -16 220 254 136 9 chr9 101952854 101952964 -15909663 + MIR SINE MIR 129 252 -10 184 239 0 22 chr9 101952933 101952979 -15909648 + L2 LINE L2 3267 3311 -2 * 190 236 83 14 chr9 101954765 101954837 -15907790 + L2 LINE L2 3158 3234 -38 413 310 17 0 chr9 101955044 101955160 -15907467 + MER117 DNA MER1_type 80 197 0 572 189 47 32 chr9 101956645 101956822 -15905805 + MIR SINE MIR 17 200 -62 330 281 70 13 chr9 101956858 101957055 -15905572 - MIR3 SINE MIR -52 210 3 734 280 34 0 chr9 101957492 101957711 -15904916 - MIR SINE MIR -1 261 34 185 292 67 0 chr9 101957901 101957990 -15904637 + MIR3 SINE MIR 86 180 -28 267 273 50 25 chr9 101958685 101958806 -15903821 + L2 LINE L2 2851 2974 -298 193 211 96 0 chr9 101958931 101958983 -15903644 + L2 LINE L2 3200 3256 -57 218 304 45 42 chr9 101959027 101959172 -15903455 + MIR SINE MIR 37 184 -61 224 239 90 0 chr9 101959258 101959325 -15903302 + MIR SINE MIR 77 149 -59 352 279 93 31 chr9 101959663 101959824 -15902803 + MER5B DNA MER1_type 8 178 0 416 318 85 27 chr9 101960142 101960400 -15902227 + L2 LINE L2 3000 3272 0 2483 78 0 10 chr9 101960425 101960733 -15901894 + AluSq SINE Alu 1 305 -8 200 234 0 21 chr9 101960756 101960803 -15901824 + MIR SINE MIR 103 148 -60 194 281 18 0 chr9 101961672 101961729 -15900898 + MIR SINE MIR 43 100 -108 1912 65 18 0 chr9 101961756 101961985 -15900642 - AluY SINE Alu -17 294 62 942 56 0 0 chr9 101961985 101962093 -15900534 - AluY SINE Alu -203 108 1 568 254 64 84 chr9 101962282 101962446 -15900181 + L2 LINE L2 2971 3137 -176 2053 144 0 3 chr9 101962446 101962738 -15899889 - AluSx SINE Alu -21 291 1 568 254 64 84 chr9 101962738 101962919 -15899708 + L2 LINE L2 3137 3309 -4 205 318 23 34 chr9 101963086 101963174 -15899453 + MIR SINE MIR 71 157 -105 646 273 53 11 chr9 101964008 101964195 -15898432 - MIR SINE MIR -66 196 2 310 292 263 11 chr9 101964497 101964778 -15897849 + L2 LINE L2 2962 3313 0 456 221 11 0 chr9 101964786 101964881 -15897746 - MIR SINE MIR -87 175 80 266 318 141 10 chr9 101965055 101965253 -15897374 + L2 LINE L2 3083 3306 -7 26 0 0 0 chr9 101966115 101966141 -15896486 + GC_rich Low_complexity Low_complexity 1 26 0 220 172 32 0 chr9 101966479 101966541 -15896086 - MIR SINE MIR -62 146 109 250 282 9 36 chr9 101966711 101966821 -15895806 + L1ME4a LINE L1 5965 6071 -50 306 172 25 74 chr9 101966954 101967076 -15895551 - L1ME4a LINE L1 -21 6100 5985 296 290 153 0 chr9 101967126 101967250 -15895377 + L1ME4a LINE L1 5956 6098 -23 273 57 0 0 chr9 101967922 101967957 -15894670 + (GTATG)n Simple_repeat Simple_repeat 3 37 0 311 241 222 0 chr9 101967987 101968095 -15894532 + MIR SINE MIR 72 203 -59 361 201 78 71 chr9 101968258 101968412 -15894215 - MIR3 SINE MIR -8 200 46 206 147 0 0 chr9 101968575 101968609 -15894018 + L3 LINE CR1 1387 1420 -157 210 273 30 0 chr9 101968689 101968755 -15893872 - MIR SINE MIR -98 164 97 298 206 54 11 chr9 101969328 101969420 -15893207 + L1ME4a LINE L1 6013 6108 -13 502 232 282 0 chr9 101969472 101969653 -15892974 - MIR SINE MIR 0 262 31 226 274 32 63 chr9 101969717 101969812 -15892815 + MIR SINE MIR 71 162 -100 182 291 211 40 chr9 101969921 101970144 -15892483 + L2 LINE L2 3010 3270 -2 764 339 51 5 chr9 101970195 101970584 -15892043 + L2 LINE L2 2399 2805 -509 180 352 33 0 chr9 101971537 101971628 -15890999 - MIR SINE MIR -88 174 81 244 229 82 0 chr9 101972748 101972809 -15889818 + L2 LINE L2 3246 3311 -2 344 259 97 75 chr9 101973733 101973961 -15888666 + MIR SINE MIR 14 246 -16 2119 117 3 3 chr9 101975889 101976200 -15886427 - AluSc SINE Alu 0 311 1 247 211 13 40 chr9 101976573 101976649 -15885978 + (CA)n Simple_repeat Simple_repeat 1 74 0 214 340 31 21 chr9 101978537 101978634 -15883993 - MIR SINE MIR -112 150 53 224 219 0 0 chr9 101979885 101979926 -15882701 + GA-rich Low_complexity Low_complexity 4 44 0 216 239 0 30 chr9 101981006 101981097 -15881530 + (CCCCAG)n Simple_repeat Simple_repeat 1 88 0 339 182 0 0 chr9 101981132 101981209 -15881418 + CT-rich Low_complexity Low_complexity 1 77 0 215 233 0 22 chr9 101981299 101981389 -15881238 + (CAGA)n Simple_repeat Simple_repeat 2 89 0 546 332 20 36 chr9 101982838 101983085 -15879542 - MIR SINE MIR -12 250 8 318 106 0 0 chr9 101983111 101983158 -15879469 + (CA)n Simple_repeat Simple_repeat 1 47 0 253 188 42 0 chr9 101983217 101983265 -15879362 + MIR SINE MIR 117 166 -96 243 336 88 0 chr9 101983425 101983538 -15879089 - L2 LINE L2 -234 3038 2916 420 242 94 0 chr9 101983595 101983723 -15878904 - MIR SINE MIR 0 262 123 652 272 29 73 chr9 101983848 101984120 -15878507 + MIR SINE MIR 2 261 -1 393 228 120 16 chr9 101984390 101984570 -15878057 + MIR SINE MIR 2 206 -56 2291 111 0 22 chr9 101984582 101984898 -15877729 + AluSc SINE Alu 1 309 0 284 258 15 0 chr9 101985438 101985504 -15877123 + MIR SINE MIR 77 143 -65 635 314 29 16 chr9 101985697 101985939 -15876688 + MIR SINE MIR 18 262 0 537 268 77 68 chr9 101986142 101986452 -15876175 - L2 LINE L2 -10 3262 2950 493 296 40 11 chr9 101986616 101986792 -15875835 + MIR SINE MIR 4 184 -78 191 268 155 0 chr9 101986924 101986995 -15875632 + L2 LINE L2 3023 3104 -209 25 51 0 0 chr9 101987271 101987310 -15875317 + AT_rich Low_complexity Low_complexity 1 39 0 1993 128 20 13 chr9 101987361 101987527 -15875100 - AluSx SINE Alu -12 300 130 2409 101 3 0 chr9 101987527 101987835 -15874792 - AluSp SINE Alu -4 309 1 1993 128 20 13 chr9 101987835 101987966 -15874661 - AluSx SINE Alu -182 130 1 206 164 0 60 chr9 101987984 101988051 -15874576 + (TA)n Simple_repeat Simple_repeat 1 63 0 290 353 101 18 chr9 101988074 101988360 -15874267 - L2 LINE L2 -814 2500 2191 402 208 78 2 chr9 101989396 101989579 -15873048 + MLT1K LTR MaLR 356 585 -3 1089 216 52 33 chr9 101989875 101990180 -15872447 - MER58B DNA MER1_type -1 340 30 599 274 29 11 chr9 101990182 101990357 -15872270 + MIR3 SINE MIR 24 201 -7 1464 276 82 8 chr9 101990362 101991147 -15871480 - L2 LINE L2 -5 3308 2458 897 107 0 0 chr9 101991369 101991490 -15871137 - AluSg/x SINE Alu -11 299 179 182 278 42 28 chr9 101994390 101994462 -15868165 - MIR SINE MIR -12 250 178 589 259 75 23 chr9 101994514 101994688 -15867939 - MIR SINE MIR -67 195 13 448 267 109 50 chr9 101994755 101994819 -15867808 - MIR SINE MIR 0 262 203 1748 169 0 42 chr9 101994819 101994981 -15867646 - AluJo SINE Alu -18 294 150 2316 89 0 10 chr9 101994981 101995283 -15867344 - AluSc SINE Alu -10 299 1 1748 169 0 42 chr9 101995283 101995427 -15867200 - AluJo SINE Alu -162 150 1 448 267 109 50 chr9 101995427 101995564 -15867063 - MIR SINE MIR -59 203 49 285 329 25 11 chr9 101996624 101996789 -15865838 + MIR SINE MIR 12 262 0 205 73 24 24 chr9 101996819 101996860 -15865767 + (CAAAA)n Simple_repeat Simple_repeat 5 45 0 22 0 0 0 chr9 101997820 101997842 -15864785 + AT_rich Low_complexity Low_complexity 1 22 0 1877 136 0 45 chr9 101997851 101998160 -15864467 + AluJb SINE Alu 1 295 -17 922 127 0 0 chr9 101998345 101998463 -15864164 - FLAM_C SINE Alu -15 118 1 24 0 0 0 chr9 101999349 101999373 -15863254 + AT_rich Low_complexity Low_complexity 1 24 0 2187 100 3 16 chr9 101999930 102000240 -15862387 - AluSc SINE Alu -3 306 1 380 226 150 128 chr9 102000240 102000474 -15862153 + MIR SINE MIR 20 258 -4 232 244 0 0 chr9 102001056 102001101 -15861526 - L2 LINE L2 -7 3306 3262 24 32 0 0 chr9 102001260 102001291 -15861336 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr9 102001319 102001343 -15861284 + AT_rich Low_complexity Low_complexity 1 24 0 382 249 77 66 chr9 102001364 102001545 -15861082 - MIR SINE MIR -71 191 9 1894 168 13 0 chr9 102001586 102001890 -15860737 + AluJb SINE Alu 1 308 -4 1803 176 3 0 chr9 102001944 102002239 -15860388 + AluJb SINE Alu 1 296 -16 300 269 148 35 chr9 102002407 102002658 -15859969 + L1P1 LINE L1 5550 5828 -325 260 200 48 112 chr9 102002656 102002781 -15859846 - L1ME3 LINE L1 -1 6161 6045 * 394 257 73 44 chr9 102002841 102003047 -15859580 + L1ME4a LINE L1 5906 6117 -4 1316 180 78 20 chr9 102003058 102003348 -15859279 - AluJo SINE Alu 0 317 13 227 326 122 0 chr9 102003865 102003963 -15858664 - L2 LINE L2 -54 3218 3109 198 0 0 0 chr9 102004590 102004612 -15858015 + (CAAA)n Simple_repeat Simple_repeat 1 22 0 22 0 0 0 chr9 102005874 102005896 -15856731 + AT_rich Low_complexity Low_complexity 1 22 0 2409 92 0 7 chr9 102005899 102006204 -15856423 + AluSx SINE Alu 1 303 -9 228 297 48 72 chr9 102006853 102007062 -15855565 - L2 LINE L2 -31 3282 3079 251 233 67 121 chr9 102007605 102007845 -15854782 + L2 LINE L2 2301 2527 -787 1123 121 30 138 chr9 102007963 102008227 -15854400 + AluJb SINE Alu 85 323 0 203 316 40 13 chr9 102008982 102009058 -15853569 - MIR3 SINE MIR -5 203 126 1136 75 0 0 chr9 102009233 102009379 -15853248 - AluY SINE Alu -14 297 152 1701 54 0 36 chr9 102009380 102009604 -15853023 - AluY SINE Alu -95 216 1 2099 118 0 4 chr9 102010414 102010720 -15851907 - AluSc SINE Alu 0 307 3 1410 132 149 39 chr9 102010813 102011094 -15851533 + AluJo SINE Alu 1 312 0 2024 109 0 0 chr9 102011883 102012149 -15850478 - AluSx SINE Alu -46 266 1 2061 143 10 0 chr9 102012221 102012528 -15850099 + AluSx SINE Alu 2 311 -1 224 284 30 15 chr9 102012724 102012791 -15849836 + MIR SINE MIR 86 153 -55 292 140 60 0 chr9 102013064 102013114 -15849513 + MIR3 SINE MIR 152 204 -4 528 290 77 0 chr9 102014179 102014348 -15848279 + MIR SINE MIR 80 261 -1 879 228 63 15 chr9 102014395 102014601 -15848026 + MIR SINE MIR 47 262 0 235 267 103 35 chr9 102014675 102014728 -15847899 + MIR SINE MIR 16 64 -144 2088 142 0 3 chr9 102014728 102015039 -15847588 - AluSx SINE Alu -1 311 2 235 267 103 35 chr9 102015039 102015101 -15847526 + MIR SINE MIR 64 139 -69 606 230 150 29 chr9 102015613 102015887 -15846740 - L2 LINE L2 -2 3311 3005 303 261 120 0 chr9 102015973 102016065 -15846562 + MIR SINE MIR 12 114 -148 422 282 60 7 chr9 102016168 102016317 -15846310 + L2 LINE L2 3152 3308 -5 202 317 50 30 chr9 102016317 102016418 -15846209 + MIR SINE MIR 95 197 -65 492 324 74 11 chr9 102017353 102017529 -15845098 - MIR SINE MIR -72 190 4 301 307 127 39 chr9 102017579 102017734 -15844893 - MIR SINE MIR -65 143 5 284 309 136 0 chr9 102017761 102017871 -15844756 - MIR3 SINE MIR -21 187 63 578 319 49 32 chr9 102018271 102018641 -15843986 - L2 LINE L2 -27 3286 2911 2221 82 7 0 chr9 102018966 102019248 -15843379 + AluSg SINE Alu 21 304 -6 2209 99 3 7 chr9 102019252 102019554 -15843073 + AluSx SINE Alu 1 301 -11 215 265 0 0 chr9 102019575 102019624 -15843003 - MIR SINE MIR -1 261 213 667 234 0 0 chr9 102019635 102019759 -15842868 - FLAM_A SINE Alu -9 124 1 715 257 206 0 chr9 102019778 102019992 -15842635 + MIR SINE MIR 4 261 -1 496 307 20 0 chr9 102020010 102020160 -15842467 - MIR SINE MIR -102 160 8 519 234 66 0 chr9 102020704 102020841 -15841786 + MIR SINE MIR 75 220 -42 2544 44 0 3 chr9 102021038 102021334 -15841293 + AluY SINE Alu 1 295 -16 343 229 157 13 chr9 102021341 102021494 -15841133 - MIR SINE MIR 0 262 88 2068 125 3 7 chr9 102021597 102021893 -15840734 + AluSx SINE Alu 1 295 -17 502 324 102 14 chr9 102021955 102022171 -15840456 - MIR SINE MIR -20 242 8 397 252 63 31 chr9 102022785 102022944 -15839683 + MIR SINE MIR 92 255 -7 403 270 93 122 chr9 102023684 102023962 -15838665 + L2 LINE L2 3003 3272 0 306 246 116 65 chr9 102024286 102024424 -15838203 - MIR3 SINE MIR -30 178 34 1227 201 5 0 chr9 102024538 102024762 -15837865 + AluJo SINE Alu 1 225 -87 252 323 65 26 chr9 102024960 102025189 -15837438 - L1M4 LINE L1 -1156 4990 4753 1868 131 41 3 chr9 102025324 102025614 -15837013 + AluJb SINE Alu 1 301 -11 1370 261 67 30 chr9 102025715 102026178 -15836449 - L1ME3A LINE L1 -26 6213 5734 252 175 0 53 chr9 102026179 102026236 -15836391 + CT-rich Low_complexity Low_complexity 4 57 0 335 260 10 42 chr9 102026240 102026336 -15836291 - L1ME3A LINE L1 -1999 4216 4124 656 99 0 0 chr9 102026366 102026457 -15836170 + L1 LINE L1 4710 4800 -1346 486 111 14 0 chr9 102026457 102026529 -15836098 - THE1B LTR MaLR 0 364 292 798 147 0 0 chr9 102026530 102026646 -15835981 + AluSq/x SINE Alu 2 117 -195 581 275 186 9 chr9 102026650 102026688 -15835939 - L1ME3A LINE L1 -2588 3627 3597 378 0 0 0 chr9 102026688 102026730 -15835897 + (TG)n Simple_repeat Simple_repeat 2 43 0 581 275 186 9 chr9 102026730 102027142 -15835485 - L1ME3A LINE L1 -2618 3597 3097 1649 188 47 122 chr9 102027168 102027505 -15835122 - L1MA9 LINE L1 -60 6252 5976 1896 145 0 14 chr9 102027505 102027794 -15834833 + AluJb SINE Alu 1 285 -27 1649 188 47 122 chr9 102027794 102028047 -15834580 - L1MA9 LINE L1 -336 5976 5706 2163 129 0 19 chr9 102028050 102028368 -15834259 - AluSx SINE Alu 0 312 1 189 0 0 0 chr9 102028368 102028389 -15834238 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1081 268 101 38 chr9 102028396 102028447 -15834180 - L1MEc LINE L1 -3130 3085 3039 921 203 6 12 chr9 102028447 102028610 -15834017 - FRAM SINE Alu -4 162 1 1081 268 101 38 chr9 102028610 102029018 -15833609 - L1MEc LINE L1 -3176 3039 2658 1709 182 30 0 chr9 102029018 102029314 -15833313 - AluJo SINE Alu -7 305 1 1081 268 101 38 chr9 102029314 102029694 -15832933 - L1MEc LINE L1 -3557 2658 2211 2119 141 0 3 chr9 102029694 102030006 -15832621 - AluSx SINE Alu -1 311 1 1081 268 101 38 chr9 102030006 102030067 -15832560 - L1MEc LINE L1 -4004 2211 2155 954 103 91 6 chr9 102030072 102030237 -15832390 - L1MA4A LINE L1 -3 6300 6122 1025 212 112 73 chr9 102030374 102030784 -15831843 - L1ME3A LINE L1 0 6170 5745 342 277 102 6 chr9 102030829 102030995 -15831632 - HAL1 LINE L1 -953 1554 1373 2170 84 46 3 chr9 102031041 102031325 -15831302 - AluSg SINE Alu -14 296 1 360 261 8 76 chr9 102031415 102031534 -15831093 + MIR SINE MIR 65 175 -87 181 0 0 94 chr9 102031649 102031681 -15830946 + L2 LINE L2 3285 3313 0 330 368 21 7 chr9 102032037 102032181 -15830446 + MIR3 SINE MIR 2 147 -61 502 345 81 0 chr9 102032191 102032400 -15830227 - MIR SINE MIR -15 247 22 488 246 103 9 chr9 102032774 102032991 -15829636 + MIR SINE MIR 1 241 -21 243 271 149 19 chr9 102032997 102033104 -15829523 - L2 LINE L2 0 3313 3193 463 403 64 22 chr9 102034495 102034647 -15827980 - L2 LINE L2 0 3272 3128 705 240 67 35 chr9 102034647 102034901 -15827726 + MIR SINE MIR 1 262 0 463 403 64 22 chr9 102034901 102035108 -15827519 - L2 LINE L2 -144 3128 2898 500 266 86 94 chr9 102035153 102035247 -15827380 - MIR SINE MIR 0 262 169 2283 97 0 3 chr9 102035247 102035545 -15827082 - AluSg SINE Alu -11 299 3 500 266 86 94 chr9 102035545 102035706 -15826921 - MIR SINE MIR -93 169 9 342 0 0 0 chr9 102036121 102036159 -15826468 + (TTG)n Simple_repeat Simple_repeat 2 39 0 420 275 33 66 chr9 102036218 102036400 -15826227 + MER5B DNA MER1_type 2 177 -1 449 249 72 83 chr9 102036409 102036590 -15826037 + MIR SINE MIR 20 198 -64 396 250 116 9 chr9 102036598 102036710 -15825917 - MIR SINE MIR -77 185 62 381 260 26 0 chr9 102036730 102036807 -15825820 - MER81 DNA DNA -35 79 1 1338 208 28 38 chr9 102036954 102037243 -15825384 - AluJo SINE Alu -16 286 1 216 313 30 0 chr9 102037248 102037315 -15825312 + L3 LINE CR1 1506 1574 -3 771 276 20 65 chr9 102037711 102038005 -15824622 - Charlie8 DNA MER1_type -2136 281 1 621 179 8 24 chr9 102038199 102038322 -15824305 + MIR SINE MIR 26 146 -62 1810 170 0 32 chr9 102038578 102038890 -15823737 + AluJo SINE Alu 2 303 -9 974 301 87 27 chr9 102038979 102039493 -15823134 + L2 LINE L2 2759 3313 0 21 0 0 0 chr9 102040393 102040414 -15822213 + AT_rich Low_complexity Low_complexity 1 21 0 416 287 106 16 chr9 102040462 102040650 -15821977 - MIR SINE MIR -6 256 52 279 336 25 8 chr9 102040696 102040815 -15821812 - L2 LINE L2 -1 3312 3192 457 252 22 15 chr9 102040976 102041111 -15821516 - MER117 DNA MER1_type -54 143 8 319 245 85 32 chr9 102041444 102041538 -15821089 - L2 LINE L2 -4 3268 3170 1956 127 3 85 chr9 102041898 102042238 -15820389 + AluJb SINE Alu 1 312 0 202 290 87 0 chr9 102042455 102042524 -15820103 + MIR3 SINE MIR 122 196 -12 239 273 273 0 chr9 102042551 102042661 -15819966 - MARNA DNA Mariner -433 153 14 518 276 136 13 chr9 102043149 102043377 -15819250 - MIR SINE MIR -4 258 3 204 216 0 0 chr9 102043662 102043699 -15818928 + CT-rich Low_complexity Low_complexity 4 40 0 660 294 148 18 chr9 102044138 102044475 -15818152 - L2 LINE L2 -1 3312 2932 21 100 0 0 chr9 102044590 102044660 -15817967 + AT_rich Low_complexity Low_complexity 1 70 0 811 285 67 7 chr9 102044678 102044976 -15817651 - L2 LINE L2 -398 2916 2601 184 224 103 0 chr9 102045010 102045068 -15817559 + L2 LINE L2 3204 3267 -5 664 279 114 29 chr9 102045072 102045352 -15817275 - L2 LINE L2 -1 3312 3009 294 281 239 6 chr9 102045392 102045559 -15817068 - MIR SINE MIR -10 252 47 209 253 253 11 chr9 102045847 102045942 -15816685 - L2 LINE L2 0 3272 3155 415 279 22 12 chr9 102046001 102046135 -15816492 - MIR SINE MIR -61 147 13 458 311 51 17 chr9 102046192 102046369 -15816258 + MIR3 SINE MIR 23 205 -3 219 222 44 0 chr9 102047097 102047142 -15815485 - MIR SINE MIR -18 244 198 403 325 80 13 chr9 102047151 102047388 -15815239 + MIR SINE MIR 2 254 -8 322 278 22 0 chr9 102047429 102047519 -15815108 - MIR SINE MIR -112 150 59 2318 106 0 0 chr9 102047598 102047900 -15814727 - AluSx SINE Alu -10 302 1 496 234 84 30 chr9 102048560 102048727 -15813900 - MIR SINE MIR -34 228 53 29 28 0 0 chr9 102049149 102049185 -15813442 + AT_rich Low_complexity Low_complexity 1 36 0 2239 110 14 0 chr9 102049187 102049479 -15813148 + AluSg SINE Alu 1 296 -14 325 282 23 53 chr9 102050174 102050305 -15812322 - MIR SINE MIR -116 146 20 681 288 15 15 chr9 102050540 102050745 -15811882 - L1ME1 LINE L1 -5 6161 5957 1388 256 56 37 chr9 102050799 102051264 -15811363 - L2 LINE L2 -4 3309 2836 446 183 14 0 chr9 102051264 102051335 -15811292 + AluS SINE Alu 2 73 -239 517 268 19 4 chr9 102054825 102054990 -15807637 - Charlie8 DNA MER1_type -2187 230 113 211 281 34 11 chr9 102055219 102055308 -15807319 + L2 LINE L2 2461 2551 -763 676 330 149 16 chr9 102055919 102056370 -15806257 + L2 LINE L2 2461 2971 -343 23 0 0 0 chr9 102057041 102057064 -15805563 + AT_rich Low_complexity Low_complexity 1 23 0 834 163 59 0 chr9 102057064 102057217 -15805410 + AluJo SINE Alu 122 283 -29 936 149 43 0 chr9 102059743 102059884 -15802743 + AluSx SINE Alu 38 184 -128 1022 104 0 0 chr9 102059886 102060011 -15802616 - AluSq/x SINE Alu -187 126 2 1723 209 88 7 chr9 102060022 102060433 -15802194 - L2 LINE L2 -962 2352 1909 542 266 115 40 chr9 102060461 102060534 -15802093 + MIR SINE MIR 14 80 -182 936 237 149 70 chr9 102060534 102060964 -15801663 - LTR16B LTR ERVL 0 464 1 542 266 115 40 chr9 102060964 102061116 -15801511 + MIR SINE MIR 80 256 -6 271 265 36 0 chr9 102062036 102062119 -15800508 + MIR SINE MIR 79 164 -98 348 272 35 26 chr9 102062125 102062239 -15800388 - LTR16B LTR ERVL -56 408 294 2145 110 7 32 chr9 102062330 102062639 -15799988 - AluSx SINE Alu -11 301 1 4538 140 40 49 chr9 102062792 102063715 -15798912 - L1MB8 LINE L1 -37 6141 5229 33 0 0 0 chr9 102063871 102063904 -15798723 + AT_rich Low_complexity Low_complexity 1 33 0 1366 185 23 8 chr9 102063980 102064240 -15798387 - AluJo SINE Alu -13 299 36 500 259 8 10 chr9 102064312 102064449 -15798178 - MIR SINE MIR -70 138 4 360 0 0 0 chr9 102064660 102064700 -15797927 + (CA)n Simple_repeat Simple_repeat 2 41 0 409 259 17 26 chr9 102065428 102065544 -15797083 + MIR3 SINE MIR 15 129 -79 1197 151 9 46 chr9 102065547 102065728 -15796899 - AluJo SINE Alu -17 295 122 2156 119 3 3 chr9 102065728 102066030 -15796597 + AluSx SINE Alu 1 302 -10 1197 151 9 46 chr9 102066030 102066066 -15796561 - AluJo SINE Alu -190 122 86 368 312 0 21 chr9 102066071 102066212 -15796415 + MIR SINE MIR 125 262 0 576 241 62 41 chr9 102066297 102066492 -15796135 + L2 LINE L2 3094 3292 -21 653 268 112 15 chr9 102066515 102066720 -15795907 - MIR SINE MIR -32 230 6 209 260 247 0 chr9 102066896 102066969 -15795658 - MIR SINE MIR 0 262 172 624 231 31 0 chr9 102067025 102067155 -15795472 - MIR SINE MIR -111 151 18 271 284 20 39 chr9 102067177 102067279 -15795348 - MIR SINE MIR -89 119 20 559 322 35 26 chr9 102068167 102068394 -15794233 - MIR SINE MIR -14 248 20 1121 192 0 48 chr9 102068985 102069016 -15793611 - AluJo SINE Alu -11 301 270 2427 88 0 0 chr9 102069016 102069323 -15793304 + AluSx SINE Alu 1 307 -5 1121 192 0 48 chr9 102069323 102069520 -15793107 - AluJo SINE Alu -42 270 84 1758 170 46 64 chr9 102069520 102069909 -15792718 - L1MB2 LINE L1 -42 6129 5748 209 325 153 56 chr9 102070048 102070387 -15792240 + L2 LINE L2 2937 3308 -5 662 267 5 68 chr9 102070622 102070828 -15791799 - MIR SINE MIR -11 251 59 253 288 68 30 chr9 102071216 102071348 -15791279 + L2 LINE L2 3133 3269 -3 584 319 52 4 chr9 102071584 102071832 -15790795 - MIR SINE MIR -1 261 2 393 211 318 8 chr9 102072736 102072885 -15789742 + MIR3 SINE MIR 15 213 -49 274 271 196 9 chr9 102073218 102073325 -15789302 + MIR SINE MIR 19 145 -117 614 274 142 11 chr9 102074180 102074370 -15788257 - MIR SINE MIR -27 235 21 255 210 74 79 chr9 102074691 102074844 -15787783 - MLT1I LTR MaLR 0 567 288 289 190 65 51 chr9 102074968 102075095 -15787532 - MLT1I LTR MaLR -277 132 16 431 267 33 8 chr9 102075115 102075235 -15787392 - MER5B DNA MER1_type -30 148 26 455 277 38 33 chr9 102075284 102075468 -15787159 - L2 LINE L2 -605 2709 2525 219 258 129 0 chr9 102075708 102075770 -15786857 - MER5A DNA MER1_type -60 129 60 532 152 163 0 chr9 102075793 102075885 -15786742 - FLAM_A SINE Alu -19 123 17 199 255 122 0 chr9 102076007 102076105 -15786522 + MIR SINE MIR 64 173 -89 33 25 0 0 chr9 102076769 102076809 -15785818 + AT_rich Low_complexity Low_complexity 1 40 0 2043 91 0 0 chr9 102076809 102077061 -15785566 - AluSx SINE Alu -45 267 16 183 156 0 0 chr9 102077206 102077238 -15785389 + (TG)n Simple_repeat Simple_repeat 2 33 0 244 152 0 0 chr9 102077305 102077351 -15785276 - L1ME4a LINE L1 0 6121 6076 556 251 132 52 chr9 102077372 102077668 -15784959 - L1ME4a LINE L1 -107 6014 5676 189 0 0 0 chr9 102077668 102077689 -15784938 + (TA)n Simple_repeat Simple_repeat 1 21 0 556 251 132 52 chr9 102077689 102077795 -15784832 - L1ME4a LINE L1 -445 5676 5580 232 288 243 21 chr9 102078011 102078348 -15784279 + L1ME4a LINE L1 5639 6050 -71 2257 107 3 0 chr9 102078456 102078754 -15783873 + AluY SINE Alu 1 299 -12 489 294 108 16 chr9 102079340 102079534 -15783093 + MIR SINE MIR 31 242 -20 2285 73 0 0 chr9 102079740 102080027 -15782600 - AluY SINE Alu -1 310 24 485 221 7 78 chr9 102080028 102080182 -15782445 + MIR SINE MIR 70 212 -50 217 314 86 0 chr9 102080240 102080345 -15782282 + MIR SINE MIR 149 262 0 1980 124 20 3 chr9 102080475 102080774 -15781853 - AluJb SINE Alu -8 304 1 212 260 0 0 chr9 102080872 102080922 -15781705 - MIR SINE MIR -66 142 93 250 140 0 20 chr9 102081574 102081624 -15781003 - L1ME4a LINE L1 -22 6099 6051 200 340 75 11 chr9 102081633 102081727 -15780900 - L2 LINE L2 -2 3270 3171 431 303 148 48 chr9 102081728 102082418 -15780209 - L1ME4a LINE L1 -96 6025 5267 672 251 39 56 chr9 102082482 102082679 -15779948 + MIR SINE MIR 1 195 -67 2419 67 0 10 chr9 102082679 102082979 -15779648 + AluY SINE Alu 1 297 -14 672 251 39 56 chr9 102082979 102083012 -15779615 + MIR SINE MIR 195 227 -35 383 256 47 23 chr9 102083749 102083878 -15778749 + L2 LINE L2 2920 3051 -221 215 279 73 15 chr9 102083973 102084041 -15778586 + L2 LINE L2 3201 3272 0 325 274 144 39 chr9 102084284 102084437 -15778190 - MIR SINE MIR -28 234 66 339 239 0 0 chr9 102084468 102084539 -15778088 - MIR SINE MIR -146 116 46 1935 213 110 15 chr9 102084558 102085023 -15777604 - MER21B LTR ERV1 -1 862 354 303 353 115 13 chr9 102085057 102085213 -15777414 - L2 LINE L2 -5 3267 3096 468 0 0 0 chr9 102086232 102086284 -15776343 + (TG)n Simple_repeat Simple_repeat 2 53 0 195 129 0 0 chr9 102086387 102086418 -15776209 + (TG)n Simple_repeat Simple_repeat 2 32 0 1437 166 96 0 chr9 102086426 102086697 -15775930 - AluJo SINE Alu -15 297 1 2220 89 7 16 chr9 102086705 102087009 -15775618 - AluSx SINE Alu -11 301 1 693 314 29 8 chr9 102087321 102087563 -15775064 - MIR SINE MIR -8 254 8 214 282 56 0 chr9 102087684 102087755 -15774872 + MIR SINE MIR 187 261 -1 1762 144 94 30 chr9 102088533 102088577 -15774050 - L1MB2 LINE L1 -2 6169 6129 1771 166 0 14 chr9 102088577 102088872 -15773755 - AluJo SINE Alu -21 291 1 493 281 125 46 chr9 102088878 102089245 -15773382 - L1ME2 LINE L1 -44 6120 5725 201 147 0 0 chr9 102089420 102089454 -15773173 + (TC)n Simple_repeat Simple_repeat 1 34 0 484 91 0 52 chr9 102089454 102089531 -15773096 - FLAM_A SINE Alu -14 128 56 279 289 55 0 chr9 102090143 102090271 -15772356 + L2 LINE L2 2397 2531 -783 226 284 88 20 chr9 102090414 102090516 -15772111 + L2 LINE L2 3156 3264 -8 321 231 55 22 chr9 102091153 102091244 -15771383 - MIR SINE MIR -88 174 81 2055 124 0 0 chr9 102091246 102091528 -15771099 + AluSx SINE Alu 1 282 -30 213 239 34 11 chr9 102092260 102092348 -15770279 + GA-rich Low_complexity Low_complexity 6 95 0 * 495 212 5 58 chr9 102092303 102092492 -15770135 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 201 94 0 0 chr9 102092543 102092575 -15770052 + (CAGAGA)n Simple_repeat Simple_repeat 4 35 0 470 151 94 19 chr9 102092649 102092755 -15769872 + LTR9B LTR ERV1 445 558 -86 312 27 0 0 chr9 102093673 102093710 -15768917 + (TG)n Simple_repeat Simple_repeat 1 37 0 184 283 19 0 chr9 102093989 102094042 -15768585 + L2 LINE L2 3169 3222 -91 1018 99 0 0 chr9 102094488 102094619 -15768008 + AluSx SINE Alu 1 131 -181 1139 119 0 0 chr9 102094876 102095035 -15767592 + AluSx SINE Alu 138 296 -14 278 281 232 6 chr9 102095136 102095300 -15767327 - MIR SINE MIR -6 256 56 543 228 41 28 chr9 102095356 102095501 -15767126 - MIR3 SINE MIR -49 159 13 344 289 21 0 chr9 102095606 102095703 -15766924 - MIR3 SINE MIR -24 184 86 180 0 0 0 chr9 102095911 102095931 -15766696 + (TGAA)n Simple_repeat Simple_repeat 3 22 0 2134 100 10 0 chr9 102096025 102096331 -15766296 + AluSp SINE Alu 5 298 -15 888 294 163 19 chr9 102096383 102096989 -15765638 + L2 LINE L2 2600 3272 0 864 269 27 37 chr9 102097036 102097333 -15765294 - L2 LINE L2 0 3313 3020 260 350 140 12 chr9 102098549 102098949 -15763678 - L3 LINE CR1 -15 1562 1112 219 167 0 104 chr9 102099666 102099762 -15762865 + CT-rich Low_complexity Low_complexity 6 91 0 650 262 73 5 chr9 102100365 102100556 -15762071 + MIR SINE MIR 55 258 -4 663 295 10 29 chr9 102100935 102101142 -15761485 - MIR SINE MIR -38 224 22 294 247 20 116 chr9 102101553 102101619 -15761008 + MIR SINE MIR 16 62 -146 2149 92 3 38 chr9 102101619 102101933 -15760694 - AluSx SINE Alu -9 303 1 294 247 20 116 chr9 102101933 102102012 -15760615 + MIR SINE MIR 62 147 -61 639 283 35 43 chr9 102102176 102102296 -15760331 + MIR SINE MIR 27 146 -116 729 326 101 3 chr9 102102296 102102603 -15760024 - MER46C DNA MER2_type -1 337 1 639 283 35 43 chr9 102102603 102102712 -15759915 + MIR SINE MIR 146 254 -8 442 331 48 26 chr9 102102694 102102966 -15759661 + L2 LINE L2 2700 2977 -337 * 1394 166 0 0 chr9 102104207 102104436 -15758191 - AluJo SINE Alu -2 310 82 207 237 226 43 chr9 102104572 102104665 -15757962 + L2 LINE L2 3198 3307 -6 2426 78 3 3 chr9 102104665 102104974 -15757653 + L1PA11 LINE L1 5857 6165 -9 2381 82 0 0 chr9 102104978 102105282 -15757345 + AluSq SINE Alu 1 304 -9 195 42 0 0 chr9 102105291 102105315 -15757312 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 477 0 0 0 chr9 102105421 102105474 -15757153 + (TG)n Simple_repeat Simple_repeat 2 54 0 341 244 89 30 chr9 102105489 102105624 -15757003 + MIR SINE MIR 14 156 -106 * 661 247 150 22 chr9 102105621 102105848 -15756779 - MIR SINE MIR 0 262 7 324 229 105 38 chr9 102105852 102105957 -15756670 + MIR SINE MIR 151 262 0 1857 138 3 10 chr9 102106385 102106681 -15755946 + AluJb SINE Alu 9 302 -10 299 333 113 19 chr9 102106914 102107127 -15755500 + L2 LINE L2 3014 3246 -67 688 141 0 33 chr9 102107139 102107260 -15755367 - AluJo SINE Alu -76 236 120 191 260 0 0 chr9 102107262 102107312 -15755315 + L2 LINE L2 3198 3247 -25 26 0 0 0 chr9 102107642 102107668 -15754959 + GC_rich Low_complexity Low_complexity 1 26 0 24 32 0 0 chr9 102107743 102107774 -15754853 + GC_rich Low_complexity Low_complexity 1 31 0 257 139 0 0 chr9 102108373 102108416 -15754211 - MIR SINE MIR -75 133 91 230 256 0 58 chr9 102108680 102108766 -15753861 - MIR SINE MIR -83 125 44 1064 251 61 26 chr9 102109292 102109603 -15753024 + L2 LINE L2 2990 3311 -2 987 148 13 0 chr9 102109744 102109899 -15752728 - AluSg/x SINE Alu -19 291 135 213 333 0 0 chr9 102109987 102110044 -15752583 - MER91 DNA MER1_type 0 190 134 540 233 62 14 chr9 102110173 102110319 -15752308 + MER45A DNA AcHobo 26 178 0 180 159 0 45 chr9 102110352 102110396 -15752231 - MIR SINE MIR -61 147 106 272 311 42 8 chr9 102110655 102110774 -15751853 - L2 LINE L2 -219 3053 2931 193 222 0 22 chr9 102111157 102111202 -15751425 - MIR SINE MIR -149 59 16 518 345 117 14 chr9 102111523 102111891 -15750736 + L2 LINE L2 2369 2774 -540 413 265 68 80 chr9 102112003 102112053 -15750574 + MIR SINE MIR 2 51 -211 2351 66 0 31 chr9 102112053 102112371 -15750256 - AluY SINE Alu -3 308 1 413 265 68 80 chr9 102112371 102112482 -15750145 + MIR SINE MIR 51 161 -101 2083 105 0 37 chr9 102112578 102112901 -15749726 - AluY SINE Alu 0 311 1 42 0 0 0 chr9 102112913 102112955 -15749672 + AT_rich Low_complexity Low_complexity 1 42 0 801 197 0 0 chr9 102112962 102113089 -15749538 - FLAM_C SINE Alu -4 129 3 21 36 0 0 chr9 102113091 102113119 -15749508 + AT_rich Low_complexity Low_complexity 1 28 0 1799 178 3 0 chr9 102113121 102113425 -15749202 - AluJb SINE Alu -7 305 1 1303 212 42 40 chr9 102113432 102113764 -15748863 - MER77 LTR ERV1 -7 598 292 1266 128 9 44 chr9 102113765 102113964 -15748663 + Tigger2 DNA MER2_type 2500 2692 -26 2096 118 3 0 chr9 102113964 102114261 -15748366 - AluSx SINE Alu -14 298 1 1266 128 9 44 chr9 102114261 102114288 -15748339 + Tigger2 DNA MER2_type 2692 2718 0 275 304 253 10 chr9 102114320 102114616 -15748011 + L2 LINE L2 2887 3254 -18 2190 115 0 0 chr9 102114617 102114921 -15747706 - AluSx SINE Alu -8 304 1 424 273 91 45 chr9 102115083 102115281 -15747346 - MIR SINE MIR -30 232 26 331 311 106 0 chr9 102115846 102115978 -15746649 + MIR3 SINE MIR 20 165 -43 282 276 0 0 chr9 102116597 102116749 -15745878 + (AGTTG)n Simple_repeat Simple_repeat 2 153 0 401 226 128 0 chr9 102117236 102117338 -15745289 + MIR3 SINE MIR 71 185 -23 201 121 0 0 chr9 102117629 102117662 -15744965 + (GA)n Simple_repeat Simple_repeat 1 33 0 259 294 20 0 chr9 102118245 102118347 -15744280 + (AGTTG)n Simple_repeat Simple_repeat 3 106 0 433 226 6 6 chr9 102118360 102118528 -15744099 + (AGTTG)n Simple_repeat Simple_repeat 2 169 0 308 223 10 0 chr9 102118558 102118661 -15743966 + (AGTTG)n Simple_repeat Simple_repeat 4 107 0 21 0 0 0 chr9 102118985 102119006 -15743621 + AT_rich Low_complexity Low_complexity 1 21 0 3215 138 28 75 chr9 102119006 102119056 -15743571 - L1MA7 LINE L1 -1 6290 6239 2461 117 37 0 chr9 102119056 102119407 -15743220 - THE1B LTR MaLR 0 364 1 1642 169 20 14 chr9 102119414 102119709 -15742918 - AluJo SINE Alu -15 297 1 3215 138 28 75 chr9 102119709 102120188 -15742439 - L1MA7 LINE L1 -58 6233 5787 2212 90 3 19 chr9 102120188 102120499 -15742128 - AluSg1 SINE Alu -3 306 1 3215 138 28 75 chr9 102120499 102120614 -15742013 - L1MA7 LINE L1 -504 5787 5668 257 299 229 0 chr9 102120836 102120993 -15741634 - MIR SINE MIR -10 252 60 351 305 92 23 chr9 102122043 102122217 -15740410 + MIR SINE MIR 35 220 -42 199 350 0 0 chr9 102122261 102122321 -15740306 - L2 LINE L2 0 3313 3254 * 959 225 0 5 chr9 102122292 102122483 -15740144 - MIR SINE MIR -25 237 48 2284 101 0 0 chr9 102122543 102122849 -15739778 - AluSx SINE Alu -6 306 1 403 231 25 25 chr9 102123078 102123199 -15739428 + MIR SINE MIR 21 141 -67 885 234 124 88 chr9 102123556 102123620 -15739007 + MLT1K LTR MaLR 2 62 -526 2100 82 7 0 chr9 102123620 102123926 -15738701 - AluY SINE Alu 0 308 1 885 234 124 88 chr9 102123926 102124270 -15738357 + MLT1K LTR MaLR 62 426 -162 1651 165 44 0 chr9 102124478 102124598 -15738029 + AluJb SINE Alu 1 114 -203 190 20 40 60 chr9 102124598 102124648 -15737979 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 1651 165 44 0 chr9 102124648 102124832 -15737795 + AluJb SINE Alu 114 317 0 581 279 172 46 chr9 102125502 102125868 -15736759 + MLT1J LTR MaLR 100 511 0 859 142 21 14 chr9 102125893 102126034 -15736593 - FLAM_C SINE Alu -1 142 1 22 35 0 0 chr9 102126119 102126148 -15736479 + AT_rich Low_complexity Low_complexity 1 29 0 716 284 104 5 chr9 102126153 102126375 -15736252 - MIR SINE MIR -3 259 16 322 293 36 36 chr9 102126385 102126525 -15736102 - MIR3 SINE MIR -50 158 19 474 314 71 38 chr9 102127118 102127328 -15735299 + MIR SINE MIR 34 250 -12 265 267 48 19 chr9 102127372 102127477 -15735150 + MIR SINE MIR 107 214 -48 1735 142 9 32 chr9 102127479 102127795 -15734832 + AluJo SINE Alu 1 309 -3 570 335 59 5 chr9 102127962 102128183 -15734444 + MIR SINE MIR 30 262 0 434 290 70 35 chr9 102128293 102128493 -15734134 - MIR SINE MIR -3 259 53 318 318 0 0 chr9 102129012 102129097 -15733530 - L2 LINE L2 -1 3271 3187 409 315 107 6 chr9 102129844 102130014 -15732613 - MIR3 SINE MIR -18 190 7 787 301 9 9 chr9 102130817 102131043 -15731584 - MIR SINE MIR -17 245 20 219 275 83 28 chr9 102131306 102131415 -15731212 + MIR SINE MIR 24 138 -70 319 266 55 9 chr9 102132398 102132507 -15730120 - MIR SINE MIR -115 147 34 296 354 31 8 chr9 102133057 102133187 -15729440 - MIR SINE MIR -65 197 65 184 356 8 42 chr9 102133588 102133706 -15728921 - L2 LINE L2 -155 3117 3004 188 253 36 24 chr9 102134962 102135045 -15727582 - MIR SINE MIR -57 151 68 185 370 25 0 chr9 102135046 102135127 -15727500 - L2 LINE L2 -3 3269 3187 226 296 130 0 chr9 102135175 102135290 -15727337 + L3b LINE CR1 1304 1433 -150 299 302 67 19 chr9 102135443 102135598 -15727029 + MIR SINE MIR 30 192 -60 387 0 0 0 chr9 102136942 102136985 -15725642 + (TG)n Simple_repeat Simple_repeat 2 44 0 194 252 66 62 chr9 102137323 102137445 -15725182 + MIR3 SINE MIR 33 163 -45 190 244 0 0 chr9 102137515 102137556 -15725071 + L3b LINE CR1 1349 1389 -194 1653 175 0 4 chr9 102140782 102141107 -15721520 + AluJb SINE Alu 6 329 0 1315 175 5 9 chr9 102141107 102141324 -15721303 + MER58A DNA MER1_type 5 220 -4 423 341 33 11 chr9 102141345 102141527 -15721100 - MIR SINE MIR -41 221 36 292 268 67 45 chr9 102141593 102141772 -15720855 - L1MC5 LINE L1 -46 7915 7733 1790 192 29 0 chr9 102142754 102143134 -15719493 - Charlie5 DNA MER1_type 0 2624 2234 570 136 0 100 chr9 102143131 102143271 -15719356 - Charlie5 DNA MER1_type -2485 127 2 * 293 313 0 0 chr9 102143296 102143376 -15719251 + L2 LINE L2 3233 3312 -1 364 311 70 72 chr9 102143447 102144043 -15718584 - L2 LINE L2 -214 3058 2467 389 310 172 0 chr9 102144436 102144610 -15718017 + MIR SINE MIR 46 249 -13 235 295 168 0 chr9 102145183 102145278 -15717349 - MIR SINE MIR -72 190 80 643 243 13 88 chr9 102145472 102145553 -15717074 - MIR SINE MIR -32 230 144 1979 137 0 0 chr9 102145553 102145853 -15716774 - AluSx SINE Alu -12 300 1 643 243 13 88 chr9 102145853 102145997 -15716630 - MIR SINE MIR -118 144 22 214 204 0 19 chr9 102146593 102146607 -15716020 + (CAA)n Simple_repeat Simple_repeat 2 15 -39 1441 192 10 39 chr9 102146607 102146914 -15715713 + AluJo SINE Alu 1 298 -14 214 204 0 19 chr9 102146914 102146953 -15715674 + (CAA)n Simple_repeat Simple_repeat 15 54 0 193 203 119 17 chr9 102147396 102147455 -15715172 + MIR SINE MIR 121 185 -77 216 267 22 0 chr9 102147493 102147538 -15715089 - L2 LINE L2 -40 3232 3187 233 224 0 0 chr9 102147615 102147664 -15714963 - MIR SINE MIR -20 242 194 197 288 73 78 chr9 102147717 102147922 -15714705 - L2 LINE L2 -181 3091 2888 2329 132 46 5 chr9 102147991 102148361 -15714266 + MLT1B LTR MaLR 6 390 0 841 110 0 24 chr9 102148795 102148922 -15713705 - FLAM_C SINE Alu 0 143 20 355 284 35 41 chr9 102149000 102149152 -15713475 - MIR SINE MIR -21 241 89 1814 201 134 17 chr9 102149152 102149570 -15713057 - MLT1C LTR MaLR 0 467 1 355 284 35 41 chr9 102149570 102149586 -15713041 - MIR SINE MIR -173 89 74 2086 157 0 0 chr9 102149734 102150046 -15712581 - AluSx SINE Alu 0 312 1 1808 158 0 32 chr9 102150269 102150580 -15712047 + AluJb SINE Alu 2 302 -10 287 300 94 64 chr9 102150959 102151212 -15711415 - L2 LINE L2 -87 3185 2919 2421 68 0 0 chr9 102151212 102151504 -15711123 + AluY SINE Alu 2 293 -18 287 300 94 64 chr9 102151504 102151661 -15710966 - L2 LINE L2 -353 2919 2768 254 330 34 25 chr9 102151690 102151808 -15710819 + MER5A DNA MER1_type 25 143 -46 1071 103 0 23 chr9 102151817 102152039 -15710588 + (TA)n Simple_repeat Simple_repeat 1 216 0 187 244 279 0 chr9 102152326 102152412 -15710215 + MIR3 SINE MIR 64 173 -35 190 246 213 0 chr9 102152465 102152526 -15710101 - MIR SINE MIR -74 134 61 248 266 161 0 chr9 102154218 102154342 -15708285 - MIR SINE MIR -20 242 99 585 206 21 85 chr9 102154480 102154669 -15707958 - L2 LINE L2 0 3313 3137 230 312 89 19 chr9 102155128 102155285 -15707342 + MLT1K LTR MaLR 10 177 -411 297 248 28 103 chr9 102155371 102155516 -15707111 + LTR67 LTR ERVL 408 541 -16 234 346 38 14 chr9 102155559 102155770 -15706857 - L2 LINE L2 -567 2747 2532 2112 178 11 8 chr9 102155942 102156291 -15706336 + MLT2C1 LTR ERVL 1 350 -47 1174 169 38 2 chr9 102156291 102156574 -15706053 + MER2 DNA MER2_type 1 337 -8 306 290 30 0 chr9 102156627 102156727 -15705900 - L1MC4 LINE L1 -1326 6716 6614 201 210 0 0 chr9 102156739 102156801 -15705826 + (TA)n Simple_repeat Simple_repeat 2 63 0 21 0 0 0 chr9 102156924 102156945 -15705682 + AT_rich Low_complexity Low_complexity 1 21 0 1718 92 83 0 chr9 102156957 102157197 -15705430 + L1PA11 LINE L1 5882 6141 -33 306 0 0 0 chr9 102157275 102157309 -15705318 + (TAA)n Simple_repeat Simple_repeat 2 35 0 352 122 0 0 chr9 102157309 102157358 -15705269 + MLT2C1 LTR ERVL 416 464 0 1246 303 98 17 chr9 102157367 102157846 -15704781 - LTR67 LTR ERVL -4 553 36 15007 128 37 30 chr9 102158111 102160477 -15702150 + L1 LINE L1 16 2398 -5167 4469 181 23 6 chr9 102160465 102161339 -15701288 + L1 LINE L1 5735 6623 -942 * 724 122 0 35 chr9 102161342 102161441 -15701186 + L1MA3 LINE L1 6189 6299 -6 1989 198 70 9 chr9 102161820 102162250 -15700377 - L1ME3 LINE L1 -3 6159 5704 2465 64 0 3 chr9 102162272 102162567 -15700060 - AluY SINE Alu -17 294 1 444 303 142 0 chr9 102162752 102162914 -15699713 - MIR SINE MIR -11 251 67 1020 170 52 52 chr9 102163502 102163714 -15698913 - L1MB5 LINE L1 -8 6166 5955 567 280 76 31 chr9 102163726 102163951 -15698676 - MIR SINE MIR -21 241 7 308 179 0 0 chr9 102165185 102165241 -15697386 - L1ME3 LINE L1 -6 6090 6035 1418 156 0 94 chr9 102165243 102165430 -15697197 - AluJo SINE Alu -18 294 142 2178 124 0 0 chr9 102165430 102165721 -15696906 - AluSc SINE Alu -18 291 1 1418 156 0 94 chr9 102165721 102165821 -15696806 - AluJo SINE Alu -170 142 34 7431 127 171 28 chr9 102165827 102167310 -15695317 - pTR5 LTR ERV1 0 2438 743 1177 218 13 81 chr9 102167368 102167466 -15695161 - L1ME3 LINE L1 -175 5921 5818 1568 150 77 25 chr9 102167466 102167740 -15694887 - AluJo SINE Alu -24 288 1 1177 218 13 81 chr9 102167740 102168013 -15694614 - L1ME3 LINE L1 -278 5818 5575 293 250 40 20 chr9 102168025 102168125 -15694502 + L1M LINE L1 5276 5377 -787 2398 217 66 43 chr9 102168128 102169216 -15693411 - L1ME3 LINE L1 -502 5596 4483 45523 34 5 3 chr9 102169225 102175366 -15687261 - L1PA4 LINE L1 -3 6152 1 3186 239 61 59 chr9 102175369 102175536 -15687091 - L1ME3 LINE L1 -1587 4493 4328 410 162 0 0 chr9 102175536 102175604 -15687023 - L1PA16 LINE L1 -2 6164 6097 3186 239 61 59 chr9 102175604 102176657 -15685970 - L1ME3 LINE L1 -1752 4328 3271 1968 160 3 0 chr9 102176659 102176959 -15685668 - AluJb SINE Alu -11 301 1 3904 111 10 40 chr9 102176986 102177335 -15685292 - LTR8 LTR ERV1 -107 584 259 2021 123 38 0 chr9 102177335 102177627 -15685000 - AluSx SINE Alu -9 303 1 3904 111 10 40 chr9 102177627 102177879 -15684748 - LTR8 LTR ERV1 -432 259 1 14736 107 21 33 chr9 102177879 102181149 -15681478 - HUERS-P1 LTR ERV1 0 6263 2775 1869 126 22 0 chr9 102181149 102181419 -15681208 - AluSq SINE Alu -10 303 28 14736 107 21 33 chr9 102181419 102181726 -15680901 - HUERS-P1 LTR ERV1 -3488 2775 2466 7069 114 32 53 chr9 102181730 102182898 -15679729 - HUERS-P1 LTR ERV1 -5120 1143 1 1106 103 7 0 chr9 102182898 102183043 -15679584 - LTR8 LTR ERV1 0 691 546 399 306 77 11 chr9 102183114 102183297 -15679330 - L1ME3 LINE L1 -5806 264 70 22 0 0 0 chr9 102183304 102183326 -15679301 + AT_rich Low_complexity Low_complexity 1 22 0 405 268 101 73 chr9 102183372 102183742 -15678885 - L1M4c LINE L1 -4026 2356 1977 600 296 20 30 chr9 102184390 102184589 -15678038 - MER117 DNA MER1_type 0 197 1 564 285 55 24 chr9 102185204 102185369 -15677258 - L2 LINE L2 -373 2941 2772 3550 200 88 3 chr9 102185495 102186960 -15675667 - L1ME1 LINE L1 -5 6956 5366 449 209 0 0 chr9 102186970 102187061 -15675566 - MLT2D LTR ERVL -319 95 5 233 238 50 25 chr9 102187252 102187332 -15675295 - L1ME4a LINE L1 -81 6040 5959 608 322 33 8 chr9 102187988 102188233 -15674394 + MIR SINE MIR 12 262 0 287 245 29 73 chr9 102188554 102188758 -15673869 - L1ME1 LINE L1 -3905 3036 2842 399 82 41 0 chr9 102188763 102188836 -15673791 + CT-rich Low_complexity Low_complexity 2 77 0 180 0 0 0 chr9 102188834 102188854 -15673773 + (TC)n Simple_repeat Simple_repeat 1 20 0 * 1976 153 13 0 chr9 102188854 102189155 -15673472 - AluSx SINE Alu -7 305 1 1066 274 62 56 chr9 102189161 102190101 -15672526 - L1ME1 LINE L1 -4046 2895 1962 804 191 8 0 chr9 102190101 102190232 -15672395 - FLAM_C SINE Alu -1 132 1 373 79 16 48 chr9 102190242 102190305 -15672322 - L1PA16 LINE L1 -4 6162 6102 1066 274 62 56 chr9 102190305 102190649 -15671978 - L1ME1 LINE L1 -4987 1954 1576 260 226 0 0 chr9 102190658 102190711 -15671916 - L1MA9 LINE L1 -42 6270 6218 296 198 71 16 chr9 102190774 102190900 -15671727 + (TATAG)n Simple_repeat Simple_repeat 2 134 0 903 299 138 34 chr9 102190920 102191572 -15671055 - L1ME1 LINE L1 -4889 1534 815 3294 150 28 4 chr9 102192260 102192761 -15669866 + MLT2B2 LTR ERVL 1 513 -2 24 91 0 0 chr9 102192767 102192833 -15669794 + AT_rich Low_complexity Low_complexity 1 66 0 199 172 17 17 chr9 102192839 102192897 -15669730 + (CATATA)n Simple_repeat Simple_repeat 4 61 0 562 229 110 96 chr9 102192919 102193062 -15669565 + L1MCc LINE L1 19 158 -6265 1887 144 168 27 chr9 102193062 102193437 -15669190 - MSTA LTR MaLR 0 428 1 562 229 110 96 chr9 102193437 102193530 -15669097 + L1MCc LINE L1 158 248 -6175 2297 97 10 0 chr9 102193530 102193820 -15668807 - AluSx SINE Alu -19 293 1 562 229 110 96 chr9 102193820 102194009 -15668618 + L1MCc LINE L1 248 451 -5972 590 277 47 51 chr9 102194167 102194413 -15668214 - L1ME3A LINE L1 -147 6023 5818 2916 77 6 0 chr9 102194431 102194784 -15667843 + THE1A LTR MaLR 1 355 0 12317 90 12 8 chr9 102194784 102196358 -15666269 + THE1A-int LTR MaLR 1 1580 0 2837 80 11 0 chr9 102196383 102196734 -15665893 + THE1A LTR MaLR 1 355 0 1286 273 13 18 chr9 102196761 102197153 -15665474 - L1ME3A LINE L1 -358 5812 5423 * 2743 247 40 23 chr9 102197144 102198334 -15664293 - L1ME3A LINE L1 0 6162 4902 2779 10 0 0 chr9 102198507 102198807 -15663820 + AluYa5 SINE Alu 1 300 -11 960 217 0 0 chr9 102198914 102199080 -15663547 - AluJo/FRAM SINE Alu 0 302 137 847 128 7 64 chr9 102199083 102199113 -15663514 - FLAM_C SINE Alu -173 139 109 3492 73 4 22 chr9 102199113 102199563 -15663064 - MLT2A1 LTR ERVL 0 444 3 847 128 7 64 chr9 102199563 102199673 -15662954 - FLAM_C SINE Alu -203 109 7 42 65 0 0 chr9 102200034 102200111 -15662516 + AT_rich Low_complexity Low_complexity 1 77 0 1626 186 84 14 chr9 102200550 102201119 -15661508 + MER67C LTR ERV1 1 514 0 2858 97 3 26 chr9 102201126 102201508 -15661119 - THE1C LTR MaLR -2 373 1 239 333 26 9 chr9 102202031 102202145 -15660482 - L3 LINE CR1 -169 1408 1293 224 340 38 75 chr9 102202588 102202800 -15659827 + L2 LINE L2 2538 2741 -573 2008 184 39 53 chr9 102202800 102203268 -15659359 - MLT1C LTR MaLR 0 467 7 202 239 0 0 chr9 102203283 102203329 -15659298 - L2 LINE L2 -5 3308 3263 434 270 0 10 chr9 102203752 102203852 -15658775 + L2 LINE L2 3214 3312 -1 598 326 162 26 chr9 102204072 102204290 -15658337 + L2 LINE L2 2489 2676 -596 2180 129 7 110 chr9 102204290 102204725 -15657902 - MLT1B LTR MaLR 0 390 1 598 326 162 26 chr9 102204725 102205195 -15657432 + L2 LINE L2 2676 3267 -5 664 268 84 25 chr9 102205578 102205817 -15656810 + MIR SINE MIR 9 261 -1 206 81 27 0 chr9 102206602 102206639 -15655988 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 1802 167 0 14 chr9 102206642 102206929 -15655698 - AluJb SINE Alu -29 283 1 240 35 0 0 chr9 102207209 102207238 -15655389 + (TG)n Simple_repeat Simple_repeat 2 30 0 3739 135 55 2 chr9 102207474 102208022 -15654605 + LTR19B LTR ERV1 1 577 -3 201 221 12 23 chr9 102208288 102208374 -15654253 + CT-rich Low_complexity Low_complexity 4 88 0 815 126 0 119 chr9 102208452 102208538 -15654089 + FLAM_C SINE Alu 1 63 -239 3964 193 22 52 chr9 102208538 102209522 -15653105 - LTR5 LTR ERVK -14 955 1 815 126 0 119 chr9 102209522 102209586 -15653041 + FLAM_C SINE Alu 63 133 -169 2501 75 0 0 chr9 102209958 102210266 -15652361 - AluY SINE Alu -3 308 1 848 104 0 0 chr9 102210606 102210731 -15651896 - L1MA7 LINE L1 -8 6283 6159 1940 151 0 3 chr9 102210745 102211037 -15651590 + AluSx SINE Alu 1 291 -21 2592 168 11 25 chr9 102211053 102211529 -15651098 - L1MA7 LINE L1 -1 6290 5822 2217 92 3 0 chr9 102211750 102212082 -15650545 - AluSp SINE Alu 0 333 1 2481 68 0 0 chr9 102212480 102212775 -15649852 - AluY SINE Alu -16 295 1 1375 154 28 47 chr9 102213204 102213344 -15649283 + MSTA LTR MaLR 1 142 -286 2442 83 3 0 chr9 102213344 102213646 -15648981 + AluSq SINE Alu 1 303 -10 1375 154 28 47 chr9 102213646 102213882 -15648745 + MSTA LTR MaLR 142 428 0 2009 143 3 3 chr9 102214830 102215123 -15647504 + AluSx SINE Alu 1 293 -19 3353 205 37 14 chr9 102215484 102216766 -15645861 - L1MB5 LINE L1 -188 5986 4676 883 246 28 139 chr9 102216769 102217228 -15645399 + L1M4 LINE L1 553 960 -5582 * 5596 86 20 11 chr9 102217220 102217985 -15644642 + L1PA10 LINE L1 5396 6167 -1 1473 193 23 46 chr9 102217984 102218378 -15644249 + L1M4 LINE L1 937 1321 -5221 * 235 274 128 42 chr9 102218602 102218998 -15643629 - L1MEc LINE L1 -4598 1798 1335 2660 117 14 3 chr9 102218998 102219358 -15643269 - THE1B LTR MaLR 0 364 1 235 274 128 42 chr9 102219358 102219537 -15643090 - L1MEc LINE L1 -5061 1335 1173 2398 162 59 0 chr9 102219561 102219969 -15642658 - L1MA5 LINE L1 -296 6004 5573 2682 104 0 11 chr9 102220299 102220478 -15642149 - L1PB1 LINE L1 -7 6144 5965 463 93 0 175 chr9 102220478 102220575 -15642052 - MADE1 DNA Mariner 0 80 1 2682 104 0 11 chr9 102220575 102220761 -15641866 - L1PB1 LINE L1 -186 5965 5783 1348 174 12 12 chr9 102220866 102221108 -15641519 - AluJb SINE Alu -57 255 14 2273 101 0 0 chr9 102221413 102221709 -15640918 + AluSc SINE Alu 2 297 -12 327 326 48 20 chr9 102222405 102222552 -15640075 - L1ME1 LINE L1 -306 5860 5710 6025 132 33 14 chr9 102222723 102223831 -15638796 - L1MA6 LINE L1 0 7016 5886 243 36 0 0 chr9 102224173 102224201 -15638426 - THE1C LTR MaLR -211 164 137 5633 145 58 11 chr9 102224252 102228407 -15634220 - L1MA6 LINE L1 -1134 5728 635 1237 155 0 0 chr9 102228408 102228608 -15634019 - L1MA6 LINE L1 -6663 200 1 374 257 26 53 chr9 102228676 102228828 -15633799 + MER65B-int LTR ERV1 62 209 -4662 297 329 6 36 chr9 102228929 102229096 -15633531 + MER65B-int LTR ERV1 478 639 -4232 291 292 25 59 chr9 102229138 102229340 -15633287 - MER54B LTR ERVL -541 252 58 1944 109 7 43 chr9 102230819 102231123 -15631504 - AluSq SINE Alu -20 293 1 564 294 73 73 chr9 102231712 102232151 -15630476 + MER65B-int LTR ERV1 2546 2708 -4093 279 347 76 51 chr9 102232656 102233189 -15629438 + MER65B-int LTR ERV1 3245 3763 -3038 2428 130 8 8 chr9 102233189 102233544 -15629083 + THE1A LTR MaLR 1 355 0 12335 88 9 15 chr9 102233544 102235133 -15627494 + THE1A-int LTR MaLR 1 1580 0 2423 138 8 8 chr9 102235133 102235488 -15627139 + THE1A LTR MaLR 1 355 0 279 347 76 51 chr9 102235488 102235557 -15627070 + MER65B-int LTR ERV1 3762 3864 -2937 300 314 107 13 chr9 102236720 102236879 -15625748 + MER65B-int LTR ERV1 4988 5161 -1640 2084 291 56 18 chr9 102237694 102237756 -15624871 + MER65B-int LTR ERV1 4218 4276 -595 451 329 62 20 chr9 102237756 102238060 -15624567 + MER70-int LTR ERVL 4409 4725 -298 2084 291 56 18 chr9 102238060 102238541 -15624086 + MER65B-int LTR ERV1 4276 4871 0 351 228 44 18 chr9 102238541 102238655 -15623972 + MER65B LTR ERV1 1 117 -414 276 281 216 42 chr9 102239936 102240103 -15622524 + MIR SINE MIR 30 225 -37 2379 91 7 7 chr9 102240699 102241006 -15621621 - AluSx SINE Alu -5 307 1 368 254 130 45 chr9 102242189 102242366 -15620261 - MIR SINE MIR -41 221 30 739 78 0 0 chr9 102242773 102242887 -15619740 - AluSg SINE Alu 0 305 192 1106 87 7 0 chr9 102242888 102243026 -15619601 - AluSg SINE Alu -171 139 1 249 293 43 56 chr9 102244172 102244404 -15618223 + L1ME LINE L1 4755 4983 -1163 848 73 0 0 chr9 102244442 102244552 -15618075 - L1PA13 LINE L1 -2 6161 6052 2062 86 92 60 chr9 102244630 102244782 -15617845 - L1PA12 LINE L1 0 6168 6022 2485 81 0 3 chr9 102244782 102245092 -15617535 - AluSc SINE Alu 0 309 1 2062 86 92 60 chr9 102245092 102245287 -15617340 - L1PA12 LINE L1 -146 6022 5810 382 207 56 109 chr9 102245400 102245741 -15616886 + L1ME LINE L1 5204 5539 -625 1955 171 6 0 chr9 102245753 102246104 -15616523 + L1 LINE L1 4883 5235 -911 10671 165 39 7 chr9 102246240 102250063 -15612564 - L1PBa LINE L1 -1949 4913 816 1855 132 11 22 chr9 102250063 102250412 -15612215 - MER4A LTR ERV1 0 664 261 656 121 0 10 chr9 102250412 102250511 -15612116 - MER4A LTR ERV1 -566 98 1 876 124 5 115 chr9 102250511 102250720 -15611907 - L1PBa LINE L1 -6044 819 634 1256 130 5 5 chr9 102250720 102250920 -15611707 - L1PBa LINE L1 -6663 200 1 2899 244 7 20 chr9 102250927 102251739 -15610888 - L1 LINE L1 -2679 3467 2666 * 12909 176 15 59 chr9 102251735 102254120 -15608507 - L1PA15-16 LINE L1 -4533 2316 38 266 380 36 16 chr9 102254161 102254353 -15608274 - L2 LINE L2 -2511 803 608 291 281 30 30 chr9 102254421 102254588 -15608039 + L1ME LINE L1 5672 5838 -283 22 0 0 0 chr9 102255309 102255331 -15607296 + AT_rich Low_complexity Low_complexity 1 22 0 1059 299 63 40 chr9 102255342 102255767 -15606860 - LTR16C LTR ERVL -4 487 53 749 358 57 31 chr9 102256132 102256743 -15605884 - ERVL LTR ERVL -369 5158 4490 1599 335 85 20 chr9 102256775 102257821 -15604806 - ERVL LTR ERVL -1299 4465 3352 910 364 3 0 chr9 102257853 102258177 -15604450 - ERVL LTR ERVL -2254 3231 2907 3075 129 14 0 chr9 102258735 102259155 -15603472 - MSTC LTR MaLR -2 426 1 285 272 0 22 chr9 102259394 102259486 -15603141 + T-rich Low_complexity Low_complexity 4 93 0 303 315 7 14 chr9 102260289 102260432 -15602195 + GA-rich Low_complexity Low_complexity 1 142 0 243 278 89 11 chr9 102261419 102261509 -15601118 - MIR SINE MIR -6 256 160 479 214 0 6 chr9 102261665 102261819 -15600808 + GA-rich Low_complexity Low_complexity 1 153 0 2024 190 64 54 chr9 102262336 102262836 -15599791 - MLT1D LTR MaLR 0 505 1 1737 61 33 0 chr9 102263530 102263743 -15598884 + L1PA10 LINE L1 5940 6159 -9 1509 96 25 0 chr9 102264092 102264291 -15598336 - L1PA10 LINE L1 -16 6152 5949 546 287 13 7 chr9 102265900 102266050 -15596577 - MER5A DNA MER1_type -6 183 33 2012 72 4 0 chr9 102267113 102267362 -15595265 - L1PA8 LINE L1 -2 6170 5921 3088 92 62 9 chr9 102267720 102268153 -15594474 - L1PA16 LINE L1 -3 6163 5708 412 276 60 9 chr9 102268468 102268584 -15594043 + MER5A DNA MER1_type 68 189 0 351 0 0 0 chr9 102268936 102268975 -15593652 + (TG)n Simple_repeat Simple_repeat 2 40 0 252 303 169 28 chr9 102269608 102269786 -15592841 - MIR SINE MIR -56 206 4 2812 7 0 0 chr9 102269884 102270186 -15592441 - AluYa5 SINE Alu -9 302 1 320 333 6 48 chr9 102270627 102270795 -15591832 - MIR SINE MIR -55 207 47 2515 86 36 3 chr9 102271304 102271641 -15590986 - L1PA10 LINE L1 -10 6158 5811 862 58 0 0 chr9 102271641 102271745 -15590882 + L1PA10 LINE L1 5694 5797 -371 245 309 12 0 chr9 102271778 102271862 -15590765 - L1M4 LINE L1 -2042 4104 4020 1334 176 79 7 chr9 102271879 102272157 -15590470 - MLT1A1 LTR MaLR 0 365 68 240 310 0 0 chr9 102274632 102274690 -15587937 + MIR SINE MIR 81 138 -70 237 65 0 0 chr9 102276155 102276186 -15586441 + (TG)n Simple_repeat Simple_repeat 2 32 0 184 369 36 0 chr9 102276316 102276427 -15586200 - L2 LINE L2 -38 3275 3161 547 257 14 7 chr9 102276492 102276632 -15585995 - MIR SINE MIR -27 235 95 237 349 80 53 chr9 102276644 102277242 -15585385 - L2 LINE L2 -188 3084 2469 1633 191 88 0 chr9 102277643 102277962 -15584665 + MER7A DNA MER2_type 2 346 0 29 0 0 0 chr9 102279031 102279060 -15583567 + AT_rich Low_complexity Low_complexity 1 29 0 397 306 72 0 chr9 102279499 102279610 -15583017 + L2 LINE L2 3191 3309 -4 667 326 30 0 chr9 102279675 102279911 -15582716 - MIR SINE MIR 0 262 20 573 313 32 9 chr9 102281442 102281659 -15580968 - MIR SINE MIR -30 232 11 201 326 31 83 chr9 102281820 102281894 -15580733 + MER5A DNA MER1_type 1 77 -112 2189 129 0 3 chr9 102281894 102282204 -15580423 + AluSx SINE Alu 1 309 -3 201 326 31 83 chr9 102282204 102282322 -15580305 + MER5A DNA MER1_type 77 183 -6 239 383 7 21 chr9 102282331 102282472 -15580155 - MIR3 SINE MIR -51 157 19 2750 83 128 5 chr9 102284184 102284583 -15578044 - LTR7 LTR ERV1 -2 448 1 1575 82 8 25 chr9 102284583 102284826 -15577801 - HERVH LTR ERV1 0 7713 7475 1337 148 19 0 chr9 102284842 102285058 -15577569 - HERVH LTR ERV1 -1894 5819 5600 3921 142 0 2 chr9 102285059 102285635 -15576992 - HERVH LTR ERV1 -2564 5149 4575 649 146 0 0 chr9 102285632 102285728 -15576899 - HERVH LTR ERV1 -3043 4670 4575 * 1372 93 0 0 chr9 102285725 102285907 -15576720 - HERVH LTR ERV1 -3043 4670 4489 3710 77 2 6 chr9 102285910 102286414 -15576213 - HERVH LTR ERV1 -3720 3993 3492 862 118 49 0 chr9 102286404 102286548 -15576079 - HERVH LTR ERV1 -4423 3290 3140 * 15363 100 17 8 chr9 102286542 102288797 -15573830 - HERVH LTR ERV1 -4726 2987 712 3574 73 11 2 chr9 102288898 102289366 -15573261 - HERVH LTR ERV1 -7241 472 1 2792 72 119 7 chr9 102289368 102289771 -15572856 - LTR7 LTR ERV1 -2 448 1 582 222 131 7 chr9 102289976 102290129 -15572498 + HAL1 LINE L1 3 174 -2333 1103 168 19 88 chr9 102290145 102290407 -15572220 + MER67D LTR ERV1 17 260 -254 2176 184 18 14 chr9 102290407 102290623 -15572004 - L1 LINE L1 -1217 4929 4715 4262 48 17 0 chr9 102290623 102291105 -15571522 - LTR2B LTR ERV1 0 490 1 2176 184 18 14 chr9 102291105 102291324 -15571303 - L1 LINE L1 -1431 4715 4492 2529 119 8 33 chr9 102291326 102291906 -15570721 - MER61E LTR ERV1 0 779 1 2032 191 2 16 chr9 102291906 102292329 -15570298 - L1 LINE L1 -1653 4493 4077 1833 163 97 0 chr9 102292324 102292655 -15569972 + L1PA16 LINE L1 5799 6161 -5 * 1318 175 5 71 chr9 102292659 102292746 -15569881 + MER67D LTR ERV1 232 323 -191 10085 24 0 0 chr9 102292746 102294619 -15568008 - L1PA4 LINE L1 -4 6151 4273 1318 175 5 71 chr9 102294619 102294849 -15567778 + MER67D LTR ERV1 323 514 0 1496 282 82 38 chr9 102294853 102295452 -15567175 + HAL1 LINE L1 184 808 -1699 2153 244 48 26 chr9 102295477 102296129 -15566498 - L1ME3 LINE L1 -21 6141 5476 356 229 59 17 chr9 102296278 102296297 -15566330 - L1MA10 LINE L1 0 6334 6316 1330 246 157 9 chr9 102296297 102296826 -15565801 - L1ME2 LINE L1 -9 6155 5492 1990 147 0 10 chr9 102296826 102297125 -15565502 - AluJb SINE Alu -16 296 1 1330 246 157 9 chr9 102297125 102297247 -15565380 - L1ME2 LINE L1 -672 5492 5389 936 280 118 27 chr9 102297247 102297576 -15565051 + MLT1G1 LTR MaLR 236 594 -1 238 250 15 0 chr9 102297620 102297688 -15564939 - L1ME2 LINE L1 -2499 3647 3579 418 128 90 0 chr9 102297694 102297772 -15564855 + L1MA7 LINE L1 6205 6289 -2 26 50 0 0 chr9 102297774 102297814 -15564813 + AT_rich Low_complexity Low_complexity 1 40 0 2680 244 96 32 chr9 102297814 102298030 -15564597 - L1ME2 LINE L1 -2572 3574 3373 2068 98 7 0 chr9 102298030 102298304 -15564323 - AluSp SINE Alu -1 312 37 2680 244 96 32 chr9 102298304 102299290 -15563337 - L1ME2 LINE L1 -2773 3373 2295 696 261 50 9 chr9 102299323 102299545 -15563082 + L1ME LINE L1 5592 5822 -348 331 273 58 96 chr9 102299611 102299871 -15562756 + MLT1H1-int LTR MaLR 1107 1356 -15 688 239 110 116 chr9 102299884 102300153 -15562474 + MLT1H1 LTR MaLR 1 242 -288 1659 82 29 0 chr9 102300443 102300688 -15561939 - L1MA5A LINE L1 -4 6293 6042 26 30 0 0 chr9 102300689 102300722 -15561905 + AT_rich Low_complexity Low_complexity 1 33 0 26 0 0 0 chr9 102300740 102300766 -15561861 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr9 102300872 102300895 -15561732 + AT_rich Low_complexity Low_complexity 1 23 0 2926 133 18 3 chr9 102301134 102301371 -15561256 - L1PB4 LINE L1 -3 6153 5921 302 0 0 26 chr9 102301371 102301410 -15561217 + (TG)n Simple_repeat Simple_repeat 2 39 0 2926 133 18 3 chr9 102301410 102301847 -15560780 - L1PB4 LINE L1 -235 5921 5351 2477 158 23 11 chr9 102301855 102302292 -15560335 - MER34 LTR ERV1 -89 453 12 4630 174 9 11 chr9 102302292 102302353 -15560274 - L1PB4 LINE L1 -790 5356 5296 1456 35 5 40 chr9 102302353 102302552 -15560075 - L1PA5 LINE L1 -8 6146 5955 270 0 0 0 chr9 102302555 102302585 -15560042 + (TTG)n Simple_repeat Simple_repeat 1 30 0 4630 174 9 11 chr9 102302585 102302805 -15559822 - L1PB4 LINE L1 -852 5294 5075 2185 160 98 0 chr9 102302805 102303193 -15559434 + MSTB LTR MaLR 1 426 0 4630 174 9 11 chr9 102303193 102303854 -15558773 - L1PB4 LINE L1 -1071 5075 4410 * 4767 202 17 21 chr9 102303852 102304922 -15557705 + L1PB4 LINE L1 3337 4402 -1744 242 227 13 40 chr9 102304984 102305059 -15557568 + MIR SINE MIR 8 80 -182 210 71 0 0 chr9 102305782 102305810 -15556817 + (CA)n Simple_repeat Simple_repeat 2 29 0 207 0 0 0 chr9 102305809 102305832 -15556795 + (TC)n Simple_repeat Simple_repeat 1 23 0 * 432 0 0 0 chr9 102306501 102306549 -15556078 + (TG)n Simple_repeat Simple_repeat 2 49 0 185 260 40 0 chr9 102308576 102308626 -15554001 - MIR SINE MIR 0 262 211 547 226 70 0 chr9 102309349 102309464 -15553163 - MLT2C1 LTR ERVL -40 357 235 2924 134 45 13 chr9 102309464 102309993 -15552634 - L1MC1 LINE L1 0 6333 5788 6441 224 58 16 chr9 102310008 102310251 -15552376 - L1M4 LINE L1 -1173 4973 4742 1477 62 0 5 chr9 102310251 102310444 -15552183 + L1PA8 LINE L1 5977 6168 -4 6441 224 58 16 chr9 102310444 102312067 -15550560 - L1M4 LINE L1 -1404 4742 3028 1960 159 17 0 chr9 102312659 102313018 -15549609 - L1MA6 LINE L1 0 6300 5936 818 95 0 0 chr9 102313050 102313166 -15549461 - L1PA8 LINE L1 0 6172 6057 11691 169 9 22 chr9 102313167 102316468 -15546159 - L1P3 LINE L1 -3090 3371 56 2885 147 19 32 chr9 102316463 102316598 -15546029 - L1MA6 LINE L1 -344 5956 5822 * 3367 208 16 69 chr9 102316598 102317794 -15544833 - L1MC4 LINE L1 -743 5403 4711 6579 148 25 45 chr9 102317795 102318934 -15543693 + ERVL LTR ERVL 1925 3041 -2723 2809 127 16 2 chr9 102318934 102319360 -15543267 + ERVL LTR ERVL 3905 4336 -1428 458 215 65 0 chr9 102319360 102319486 -15543141 - L1PA16 LINE L1 -41 6122 5985 253 178 0 78 chr9 102319485 102319575 -15543052 - L1M4 LINE L1 -986 5160 5078 * 252 329 51 19 chr9 102319757 102319915 -15542712 + HAL1 LINE L1 1448 1610 -897 258 238 33 41 chr9 102320302 102320424 -15542203 - L1ME LINE L1 -311 5810 5690 23 0 0 0 chr9 102320809 102320832 -15541795 + AT_rich Low_complexity Low_complexity 1 23 0 487 271 57 39 chr9 102322511 102322740 -15539887 - L2 LINE L2 -31 3282 3050 348 24 0 0 chr9 102323405 102323446 -15539181 + (TTTTA)n Simple_repeat Simple_repeat 4 44 0 5563 23 2 0 chr9 102323447 102324090 -15538537 - L1PA3 LINE L1 -20 6135 5492 301 323 92 0 chr9 102324226 102324356 -15538271 + MIR SINE MIR 95 236 -26 285 327 96 18 chr9 102324559 102324759 -15537868 - MIR SINE MIR 0 262 42 2197 98 7 3 chr9 102325018 102325314 -15537313 + AluSc SINE Alu 2 298 -11 1383 61 0 0 chr9 102325314 102325478 -15537149 + AluSc SINE Alu 132 295 -14 2205 162 54 2 chr9 102325622 102326029 -15536598 - MSTA LTR MaLR 0 428 1 2183 245 21 17 chr9 102326548 102327180 -15535447 - L1M4 LINE L1 -2290 3856 3223 1523 244 60 2 chr9 102327195 102327668 -15534959 - L1MA9 LINE L1 -38 6274 5775 414 138 23 35 chr9 102327749 102327764 -15534863 - L1MA9 LINE L1 -498 5793 5779 2016 126 0 49 chr9 102327764 102328089 -15534538 - AluSx SINE Alu -3 309 1 414 138 23 35 chr9 102328089 102328160 -15534467 - L1MA9 LINE L1 -512 5779 5708 2427 163 10 7 chr9 102328165 102328569 -15534058 - L1MCa LINE L1 -6012 414 10 230 328 25 34 chr9 102328612 102328731 -15533896 + L1ME LINE L1 5509 5626 -495 246 276 116 58 chr9 102328998 102329291 -15533336 + L1ME LINE L1 5290 5599 -563 4396 72 21 41 chr9 102329548 102329723 -15532904 + L1PB1 LINE L1 5502 5679 -472 2180 121 0 0 chr9 102329723 102330020 -15532607 + AluSg SINE Alu 1 297 -13 4396 72 21 41 chr9 102330020 102330507 -15532120 + L1PB1 LINE L1 5679 6151 0 508 51 38 0 chr9 102330520 102330599 -15532028 + L1PB1 LINE L1 6070 6151 0 51 89 0 0 chr9 102330783 102330918 -15531709 + AT_rich Low_complexity Low_complexity 1 135 0 22 56 0 0 chr9 102332584 102332620 -15530007 + AT_rich Low_complexity Low_complexity 1 36 0 2278 104 0 0 chr9 102332639 102332937 -15529690 + AluSc SINE Alu 1 298 -11 1599 117 141 0 chr9 102333218 102333505 -15529122 + AluSx SINE Alu 1 322 0 239 272 61 78 chr9 102333881 102333987 -15528640 + L1MEd LINE L1 599 702 -5417 1601 189 14 21 chr9 102333987 102334278 -15528349 + AluJo SINE Alu 1 289 -23 239 272 61 78 chr9 102334278 102334351 -15528276 + L1MEd LINE L1 702 775 -5344 384 228 98 60 chr9 102334375 102334559 -15528068 + L1MEd LINE L1 876 1066 -5053 27 29 0 0 chr9 102334563 102334597 -15528030 + AT_rich Low_complexity Low_complexity 1 34 0 1129 154 14 93 chr9 102334740 102334980 -15527647 + L1MC3 LINE L1 7361 7578 -207 2220 111 0 10 chr9 102334980 102335286 -15527341 + AluSx SINE Alu 1 303 -9 1129 154 14 93 chr9 102335286 102335325 -15527302 + L1MC3 LINE L1 7578 7618 -167 603 146 9 27 chr9 102335473 102335583 -15527044 + FLAM_C SINE Alu 21 128 -15 474 141 13 0 chr9 102335607 102335685 -15526942 + L1ME1 LINE L1 1124 1202 -5340 1030 226 22 19 chr9 102335721 102335991 -15526636 + L1ME1 LINE L1 4344 4614 -2030 548 98 0 0 chr9 102335991 102336073 -15526554 + MLT2A2 LTR ERVL 1 82 -371 232 94 0 0 chr9 102336076 102336108 -15526519 + L1MB7 LINE L1 5836 5867 -311 1771 153 7 14 chr9 102336109 102336396 -15526231 + AluSx SINE Alu 1 285 -27 341 205 0 12 chr9 102336398 102336481 -15526146 + (TATG)n Simple_repeat Simple_repeat 3 84 0 1146 200 80 10 chr9 102336482 102336782 -15525845 + L1MB7 LINE L1 5863 6183 -1 304 376 24 12 chr9 102336781 102336951 -15525676 + L1MEc LINE L1 317 488 -6075 * 731 100 0 0 chr9 102336952 102337052 -15525575 - AluSc SINE Alu -123 186 87 443 348 16 5 chr9 102337052 102337236 -15525391 + L1MEc LINE L1 487 672 -5891 802 179 27 76 chr9 102337251 102337475 -15525152 + L1MB7 LINE L1 5970 6182 -2 649 154 0 0 chr9 102337485 102337595 -15525032 - L1P LINE L1 -1088 5058 4949 * 3245 233 73 16 chr9 102337594 102338409 -15524218 + L1ME1 LINE L1 4817 5584 -1080 2357 100 0 0 chr9 102338409 102338708 -15523919 + AluSx SINE Alu 1 299 -13 3245 233 73 16 chr9 102338708 102339628 -15522999 + L1ME1 LINE L1 5584 6659 -5 328 263 62 30 chr9 102339693 102339898 -15522729 + L1MEc LINE L1 1408 1827 -916 2248 94 0 26 chr9 102339900 102340209 -15522418 - AluSc SINE Alu -8 301 1 463 181 11 0 chr9 102340649 102340743 -15521884 + L1MA9 LINE L1 6183 6277 -35 269 225 125 0 chr9 102340853 102340933 -15521694 - L1M4 LINE L1 -3805 2523 2434 40853 32 22 1 chr9 102341055 102346853 -15515774 + L1PA3 LINE L1 230 6152 -3 213 94 0 0 chr9 102346914 102346946 -15515681 + (CA)n Simple_repeat Simple_repeat 2 33 0 398 306 78 7 chr9 102347111 102347418 -15515209 + L1MEc LINE L1 2838 3166 -3216 654 212 42 46 chr9 102347666 102347855 -15514772 - L1M4 LINE L1 -4201 1127 939 10396 40 1 1 chr9 102347855 102349905 -15512722 - L1PA5 LINE L1 -1 6153 4104 654 212 42 46 chr9 102349905 102350341 -15512286 - L1M4 LINE L1 -4389 939 539 1169 186 44 27 chr9 102350388 102350683 -15511944 - L1M4 LINE L1 -2025 4121 3822 * 3213 156 27 24 chr9 102350682 102351341 -15511286 - L1 LINE L1 -946 5200 4540 1043 243 18 7 chr9 102351348 102351624 -15511003 + MER65A-int LTR ERV1 4589 4867 -4 2335 142 32 32 chr9 102351632 102352069 -15510558 + MER65A LTR ERV1 5 441 -4 351 255 0 0 chr9 102352074 102352168 -15510459 + L1M4 LINE L1 2645 2738 -3408 1329 254 47 6 chr9 102352190 102352813 -15509814 + L1M4 LINE L1 2697 3344 -2802 2168 125 141 3 chr9 102352922 102353297 -15509330 + MSTA LTR MaLR 2 428 0 537 263 102 30 chr9 102353339 102353767 -15508860 + L1P4 LINE L1 5004 5459 -715 249 250 25 25 chr9 102353988 102354068 -15508559 - MIR SINE MIR -76 132 53 219 346 13 13 chr9 102354548 102354626 -15508001 + MIR3 SINE MIR 84 161 -47 2425 77 0 0 chr9 102356233 102356533 -15506094 + AluSg1 SINE Alu 1 300 -9 295 340 214 0 chr9 102357296 102357511 -15505116 + MIR SINE MIR 2 262 0 22 35 0 0 chr9 102360469 102360498 -15502129 + AT_rich Low_complexity Low_complexity 1 29 0 359 119 0 0 chr9 102361528 102361587 -15501040 + MADE1 DNA Mariner 2 60 -20 338 291 10 19 chr9 102362050 102362153 -15500474 - MIR SINE MIR -60 148 47 374 263 81 25 chr9 102362732 102362892 -15499735 + MIR SINE MIR 20 188 -74 837 303 42 8 chr9 102363003 102363244 -15499383 + MIR SINE MIR 3 251 -11 357 254 49 138 chr9 102363472 102363696 -15498931 + MIR SINE MIR 24 227 -35 225 248 105 19 chr9 102363864 102363969 -15498658 + L3 LINE CR1 1055 1168 -409 263 240 223 16 chr9 102364003 102364124 -15498503 - MIR SINE MIR 0 262 117 332 335 137 24 chr9 102364155 102364403 -15498224 + L3 LINE CR1 1251 1526 -51 890 211 101 29 chr9 102364498 102364914 -15497713 - Charlie2 DNA MER1_type -82 2780 2335 308 200 14 0 chr9 102364962 102365032 -15497595 + MER116 DNA Mariner 1 71 -9 297 181 175 50 chr9 102365032 102365192 -15497435 - Charlie2 DNA MER1_type -551 2311 2132 309 282 65 8 chr9 102365245 102365369 -15497258 - Charlie2 DNA MER1_type -2731 131 1 259 244 285 8 chr9 102365555 102365596 -15497031 + MIR SINE MIR 102 130 -132 249 108 0 0 chr9 102365596 102365633 -15496994 + (TAA)n Simple_repeat Simple_repeat 2 38 0 259 244 285 8 chr9 102365633 102365714 -15496913 + MIR SINE MIR 130 258 -4 286 87 0 0 chr9 102365721 102365767 -15496860 + MADE1 DNA Mariner 1 46 -34 440 231 46 113 chr9 102367129 102367367 -15495260 - LTR67 LTR ERVL -8 549 328 1563 151 3 0 chr9 102367922 102368214 -15494413 + L1 LINE L1 4540 4832 -1314 8729 127 4 23 chr9 102368221 102369721 -15492906 - L1P LINE L1 -4041 2105 634 1001 158 5 0 chr9 102369721 102369905 -15492722 + L1MA5 LINE L1 6110 6294 -6 24 0 0 0 chr9 102369905 102369929 -15492698 + AT_rich Low_complexity Low_complexity 1 24 0 294 265 43 26 chr9 102369937 102370054 -15492573 + MLT1J LTR MaLR 333 451 -60 337 150 5 0 chr9 102370069 102370152 -15492475 + L1M4 LINE L1 1234 1322 -5224 1481 206 61 11 chr9 102370199 102370671 -15491956 + L1M4 LINE L1 4756 5251 -1393 501 68 0 0 chr9 102370670 102370744 -15491883 + L1P LINE L1 4478 4551 -1595 * 5479 84 39 0 chr9 102370744 102371520 -15491107 - HERVK9 LTR ERVK -3997 1919 1114 3768 97 7 26 chr9 102371522 102372101 -15490526 - HERVK9 LTR ERVK -5348 568 1 3550 104 8 4 chr9 102372101 102372610 -15490017 - MER9 LTR ERVK 0 511 1 1013 207 7 41 chr9 102372620 102372890 -15489737 + L1M4 LINE L1 5267 5527 -1117 655 124 0 0 chr9 102372889 102372994 -15489633 + L1M2 LINE L1 5519 5623 -689 * 1408 217 21 9 chr9 102373002 102373323 -15489304 + L1MC1 LINE L1 5983 6308 -20 1787 178 3 7 chr9 102373323 102373626 -15489001 - AluJb SINE Alu -10 302 1 33 25 0 0 chr9 102373636 102373676 -15488951 + AT_rich Low_complexity Low_complexity 1 40 0 1666 188 16 41 chr9 102374130 102374497 -15488130 - MLT1A1 LTR MaLR -7 358 1 486 245 84 7 chr9 102374613 102374756 -15487871 - MER5B DNA MER1_type -3 175 22 246 261 0 43 chr9 102375181 102375250 -15487377 + MER5A DNA MER1_type 9 74 -115 198 191 0 0 chr9 102375290 102375337 -15487290 + GA-rich Low_complexity Low_complexity 2 48 0 21 0 0 0 chr9 102375528 102375549 -15487078 + AT_rich Low_complexity Low_complexity 1 21 0 495 274 134 6 chr9 102376068 102376225 -15486402 + MIR SINE MIR 86 262 0 631 296 11 0 chr9 102376287 102376463 -15486164 + MER5B DNA MER1_type 1 178 0 4006 23 0 4 chr9 102377496 102378014 -15484613 - L1P LINE L1 -2916 3230 2715 7770 19 0 1 chr9 102378014 102379131 -15483496 + L1PA3 LINE L1 5041 6153 -2 30 0 0 0 chr9 102379132 102379162 -15483465 + AT_rich Low_complexity Low_complexity 1 30 0 185 332 69 47 chr9 102380851 102381128 -15481499 + L2 LINE L2 1567 1849 -1465 1218 141 19 0 chr9 102381229 102381435 -15481192 + L1 LINE L1 4059 4268 -1878 2210 130 7 0 chr9 102381879 102382187 -15480440 - AluSg SINE Alu 0 310 1 554 290 74 98 chr9 102382321 102382363 -15480264 + L1MEd LINE L1 50 92 -6027 2489 58 0 3 chr9 102382363 102382658 -15479969 - AluY SINE Alu -17 294 1 554 290 74 98 chr9 102382658 102383593 -15479034 + L1MEd LINE L1 92 1003 -5116 2112 87 0 0 chr9 102383606 102383894 -15478733 - L1PB1 LINE L1 0 6151 5864 233 114 0 0 chr9 102383963 102383998 -15478629 - THE1A LTR MaLR 0 355 321 2258 115 74 0 chr9 102384012 102384351 -15478276 - THE1B LTR MaLR 0 364 1 1685 199 13 3 chr9 102384414 102384786 -15477841 + L1MA9 LINE L1 4922 5297 -849 180 0 0 0 chr9 102384786 102384806 -15477821 + (TAA)n Simple_repeat Simple_repeat 2 21 0 2020 142 3 0 chr9 102384829 102385117 -15477510 + AluSx SINE Alu 1 289 -23 240 135 0 0 chr9 102385146 102385183 -15477444 - THE1C LTR MaLR 0 428 392 341 43 0 0 chr9 102385188 102385234 -15477393 + AluSp SINE Alu 87 132 -171 2238 114 7 0 chr9 102385236 102385543 -15477084 + AluSp SINE Alu 1 309 -4 1748 113 69 33 chr9 102385563 102385898 -15476729 - THE1C LTR MaLR -28 347 1 4468 167 33 24 chr9 102385898 102386833 -15475794 + L1MA9 LINE L1 5331 6274 -38 377 282 86 9 chr9 102386841 102387192 -15475435 + L1MEd LINE L1 1142 1549 -4761 216 257 0 0 chr9 102387440 102387510 -15475117 + (CATATA)n Simple_repeat Simple_repeat 3 72 0 2111 112 0 3 chr9 102387514 102387831 -15474796 + AluSq SINE Alu 1 316 0 252 329 13 13 chr9 102387845 102387924 -15474703 + L2 LINE L2 3193 3271 -1 397 258 205 7 chr9 102387952 102388103 -15474524 + MIR SINE MIR 12 192 -70 297 292 58 15 chr9 102388859 102388996 -15473631 - L1M4 LINE L1 -3280 2866 2724 314 193 59 59 chr9 102389465 102389584 -15473043 + L1MC5 LINE L1 7811 7929 -32 396 257 45 19 chr9 102390518 102390679 -15471948 - L1ME3A LINE L1 -287 5883 5719 281 281 79 44 chr9 102390728 102390842 -15471785 + MIR SINE MIR 74 191 -71 202 224 15 0 chr9 102390903 102390970 -15471657 + (TA)n Simple_repeat Simple_repeat 2 69 0 712 292 51 0 chr9 102391092 102391287 -15471340 - MIR SINE MIR -6 256 52 21 36 0 0 chr9 102391400 102391428 -15471199 + AT_rich Low_complexity Low_complexity 1 28 0 218 184 0 0 chr9 102392013 102392051 -15470576 + (TTCA)n Simple_repeat Simple_repeat 4 41 0 180 176 0 0 chr9 102392411 102392445 -15470182 + (TATG)n Simple_repeat Simple_repeat 2 35 0 1528 154 75 0 chr9 102392748 102393066 -15469561 + L1MA8 LINE L1 5945 6286 -5 201 390 18 6 chr9 102393210 102393379 -15469248 + GA-rich Low_complexity Low_complexity 5 175 0 412 293 78 35 chr9 102393969 102394201 -15468426 + MIR SINE MIR 21 262 0 18334 157 72 47 chr9 102394213 102401587 -15461040 + L1PA7 LINE L1 15 7569 -4 38 0 0 0 chr9 102401589 102401627 -15461000 + AT_rich Low_complexity Low_complexity 1 38 0 2465 51 0 7 chr9 102401923 102402218 -15460409 + AluY SINE Alu 1 293 -18 27 29 0 0 chr9 102402298 102402332 -15460295 + AT_rich Low_complexity Low_complexity 1 34 0 2321 96 20 6 chr9 102402366 102402720 -15459907 - L1MA5A LINE L1 -3 6294 5936 296 95 0 0 chr9 102402721 102402763 -15459864 + L1 LINE L1 4700 4741 -1405 1250 161 24 59 chr9 102402990 102403244 -15459383 - AluJo SINE Alu -34 278 34 23 33 0 0 chr9 102403440 102403470 -15459157 + AT_rich Low_complexity Low_complexity 1 30 0 661 264 123 0 chr9 102404480 102404692 -15457935 + MIR SINE MIR 3 240 -22 269 327 30 10 chr9 102405248 102405349 -15457278 - L2 LINE L2 -20 3293 3191 1569 134 4 36 chr9 102405780 102406056 -15456571 - L1MA7 LINE L1 -226 6065 5799 1066 133 62 0 chr9 102406056 102406264 -15456363 + L1MA7 LINE L1 6067 6290 -1 2982 74 28 19 chr9 102406604 102407035 -15455592 + L1PA10 LINE L1 5734 6168 0 397 263 18 42 chr9 102407126 102407260 -15455367 + MIR SINE MIR 39 170 -63 1417 210 47 69 chr9 102407484 102407889 -15454738 + MSTD LTR MaLR 1 396 0 22 80 0 0 chr9 102408014 102408064 -15454563 + AT_rich Low_complexity Low_complexity 1 50 0 567 299 39 14 chr9 102408432 102408639 -15453988 - MIR SINE MIR -50 212 1 891 257 28 28 chr9 102408907 102409160 -15453467 + MIR SINE MIR 3 255 -7 311 375 9 0 chr9 102409359 102409471 -15453156 + L2 LINE L2 3160 3272 0 710 270 8 48 chr9 102409675 102409923 -15452704 + MIR SINE MIR 16 253 -9 919 180 33 0 chr9 102410305 102410488 -15452139 + L1MB1 LINE L1 5979 6167 -1 2537 55 0 10 chr9 102410751 102411058 -15451569 - AluY SINE Alu -7 304 1 2261 123 0 0 chr9 102411966 102412274 -15450353 + AluSx SINE Alu 1 308 -4 21 36 0 0 chr9 102412711 102412739 -15449888 + AT_rich Low_complexity Low_complexity 1 28 0 393 75 0 0 chr9 102414116 102414169 -15448458 + (TG)n Simple_repeat Simple_repeat 2 54 0 846 242 20 89 chr9 102414920 102415267 -15447360 - MER92B LTR ERV1 0 636 314 633 102 0 11 chr9 102415270 102415358 -15447269 - MER92B LTR ERV1 -549 87 1 347 305 93 53 chr9 102416053 102416299 -15446328 - MIR SINE MIR 0 262 7 259 301 81 59 chr9 102416562 102416785 -15445842 - MIR SINE MIR 0 262 30 186 103 0 0 chr9 102416884 102416913 -15445714 + (GAA)n Simple_repeat Simple_repeat 2 30 0 2585 252 50 71 chr9 102417641 102419467 -15443160 + L1M2a LINE L1 1587 3086 -4081 2090 177 33 6 chr9 102419454 102420110 -15442517 + L1MA9 LINE L1 4941 5617 -674 * 2015 117 0 14 chr9 102420115 102420405 -15442222 - AluSg SINE Alu -24 286 1 1322 238 141 27 chr9 102420445 102420920 -15441707 - LTR10B LTR ERV1 -4 543 15 1636 236 82 52 chr9 102420946 102421540 -15441087 + LTR9 LTR ERV1 1 612 0 2627 175 31 57 chr9 102421544 102421717 -15440910 + L1MA9 LINE L1 5609 5785 -527 1377 229 29 10 chr9 102421717 102422023 -15440604 + AluJo SINE Alu 1 312 0 2627 175 31 57 chr9 102422023 102422153 -15440474 + L1MA9 LINE L1 5785 5917 -395 450 0 0 0 chr9 102422153 102422203 -15440424 + (TG)n Simple_repeat Simple_repeat 2 51 0 2627 175 31 57 chr9 102422203 102422683 -15439944 + L1MA9 LINE L1 5917 6292 -20 5421 135 24 24 chr9 102422684 102423607 -15439020 + MER49 LTR ERV1 1 923 0 294 102 20 20 chr9 102424688 102424737 -15437890 - L1MA7 LINE L1 -194 6097 6049 204 40 0 0 chr9 102424793 102424818 -15437809 + (TTAA)n Simple_repeat Simple_repeat 1 25 0 201 159 0 0 chr9 102425377 102425421 -15437206 + CT-rich Low_complexity Low_complexity 1 44 0 1470 187 67 48 chr9 102425445 102425758 -15436869 + MLT1A1 LTR MaLR 1 324 -41 2014 124 0 3 chr9 102425758 102426064 -15436563 - AluSx SINE Alu 0 305 1 1470 187 67 48 chr9 102426064 102426107 -15436520 + MLT1A1 LTR MaLR 324 365 0 252 0 0 0 chr9 102427296 102427324 -15435303 + (TG)n Simple_repeat Simple_repeat 2 29 0 1791 168 0 14 chr9 102427765 102428057 -15434570 - AluJo SINE Alu -24 288 1 2261 109 0 6 chr9 102428150 102428462 -15434165 - AluSx SINE Alu -2 310 1 1398 126 21 8 chr9 102429040 102429279 -15433348 + L1MA7 LINE L1 6049 6290 -1 2735 81 0 8 chr9 102429626 102429998 -15432629 - L1PB1 LINE L1 -1 6150 5782 220 128 13 51 chr9 102429998 102430076 -15432551 + (TA)n Simple_repeat Simple_repeat 1 75 0 576 84 72 17 chr9 102430153 102430397 -15432230 + (TTATA)n Simple_repeat Simple_repeat 1 257 0 194 70 42 56 chr9 102430426 102430497 -15432130 + (TA)n Simple_repeat Simple_repeat 2 71 0 335 183 122 35 chr9 102430507 102430622 -15432005 - L1PB1 LINE L1 -359 5792 5668 349 301 65 30 chr9 102431109 102431308 -15431319 - L1M4 LINE L1 -1301 4845 4640 496 77 26 0 chr9 102431411 102431489 -15431138 + (TAGA)n Simple_repeat Simple_repeat 1 80 0 327 262 9 0 chr9 102431605 102431712 -15430915 - L1M4 LINE L1 -1536 4610 4503 323 294 41 55 chr9 102431976 102432122 -15430505 - L3 LINE CR1 -99 1478 1335 2054 196 10 13 chr9 102432368 102432765 -15429862 - MSTD LTR MaLR 0 396 1 955 45 0 0 chr9 102432774 102432884 -15429743 - AluY SINE Alu -18 293 184 854 196 16 8 chr9 102433024 102433221 -15429406 - L1MA4 LINE L1 -7 6293 6093 404 58 0 0 chr9 102433224 102433276 -15429351 + MER75B DNA T2_type 1 52 -191 283 0 0 0 chr9 102433251 102433283 -15429344 - MER75B DNA T2_type -153 90 59 * 401 245 28 9 chr9 102433300 102433406 -15429221 + MIR SINE MIR 146 253 -9 7876 250 55 43 chr9 102433552 102435464 -15427163 + L1PB4 LINE L1 1 1963 -4885 1739 158 7 37 chr9 102435464 102435761 -15426866 + AluJo SINE Alu 5 292 -20 7876 250 55 43 chr9 102435761 102436888 -15425739 + L1PB4 LINE L1 1963 3074 -3774 388 285 0 31 chr9 102436981 102437111 -15425516 + C-rich Low_complexity Low_complexity 4 129 0 11495 200 27 8 chr9 102441198 102443742 -15418885 + L1PB4 LINE L1 3081 5671 -1177 2455 154 19 62 chr9 102443742 102443888 -15418739 + L1PB4 LINE L1 6368 6519 -339 201 94 0 0 chr9 102443888 102443920 -15418707 + (CA)n Simple_repeat Simple_repeat 2 33 0 2455 154 19 62 chr9 102443920 102444275 -15418352 + L1PB4 LINE L1 6519 6857 -1 23 0 0 0 chr9 102444276 102444299 -15418328 + AT_rich Low_complexity Low_complexity 1 23 0 1804 40 9 0 chr9 102445282 102445507 -15417120 + L1PA4 LINE L1 5929 6155 0 857 187 18 18 chr9 102445766 102445937 -15416690 + MER5B DNA MER1_type 1 171 -7 366 273 79 87 chr9 102446318 102446951 -15415676 - L1ME4a LINE L1 -170 5951 5313 728 311 38 36 chr9 102446955 102447292 -15415335 - MLT1I LTR MaLR -1 408 68 1112 175 15 1 chr9 102447418 102447710 -15414917 - MER2 DNA MER2_type -4 341 14 443 296 108 19 chr9 102447711 102448181 -15414446 - L1ME4a LINE L1 -900 5246 4735 5562 103 41 32 chr9 102448287 102448415 -15414212 + L1PB3 LINE L1 5226 5351 -803 1413 194 54 18 chr9 102448415 102448694 -15413933 - AluJb SINE Alu -23 289 1 5562 103 41 32 chr9 102448694 102449137 -15413490 + L1PB3 LINE L1 5351 5815 -339 185 0 40 0 chr9 102449137 102449162 -15413465 + (TA)n Simple_repeat Simple_repeat 1 26 0 5562 103 41 32 chr9 102449162 102449505 -15413122 + L1PB3 LINE L1 5815 6153 -1 30 27 0 0 chr9 102449505 102449542 -15413085 + AT_rich Low_complexity Low_complexity 1 37 0 600 192 0 58 chr9 102449629 102449749 -15412878 - FLAM_C SINE Alu -20 123 11 441 229 49 201 chr9 102449867 102449985 -15412642 + MIR SINE MIR 20 154 -108 228 0 0 0 chr9 102449985 102450020 -15412607 - L1PA3 LINE L1 -124 6031 5997 910 36 0 0 chr9 102450020 102450130 -15412497 + L1PA2 LINE L1 6044 6153 -2 441 229 49 201 chr9 102450130 102450260 -15412367 + MIR SINE MIR 152 260 -2 1973 147 10 0 chr9 102450378 102450677 -15411950 - AluSx SINE Alu -10 302 1 472 339 61 23 chr9 102450879 102451228 -15411399 - L1ME4a LINE L1 -1994 4152 3740 26 30 0 0 chr9 102451228 102451261 -15411366 + AT_rich Low_complexity Low_complexity 1 33 0 472 339 61 23 chr9 102451261 102451503 -15411124 - L1ME4a LINE L1 -2406 3740 3509 3159 170 82 32 chr9 102451507 102451666 -15410961 - L1MB5 LINE L1 0 6174 6024 2268 93 0 23 chr9 102451666 102451976 -15410651 + AluSx SINE Alu 1 303 -9 3159 170 82 32 chr9 102451976 102452573 -15410054 - L1MB5 LINE L1 -150 6024 5380 442 266 71 31 chr9 102452762 102452988 -15409639 - L1ME4a LINE L1 -2839 3307 3073 21 95 0 0 chr9 102453271 102453334 -15409293 + AT_rich Low_complexity Low_complexity 1 63 0 433 181 76 38 chr9 102453525 102453630 -15408997 + L1MB2 LINE L1 5897 6005 -166 * 1817 187 0 0 chr9 102453622 102453953 -15408674 - L1MD1 LINE L1 -349 5893 5563 24 0 0 0 chr9 102454118 102454142 -15408485 + AT_rich Low_complexity Low_complexity 1 24 0 2196 111 7 0 chr9 102454300 102454588 -15408039 + AluSx SINE Alu 3 292 -20 2161 150 3 15 chr9 102455043 102455384 -15407243 + MER1B DNA MER1_type 1 337 0 207 287 19 83 chr9 102455802 102455910 -15406717 - L2 LINE L2 -568 2746 2646 1060 272 128 18 chr9 102455932 102456369 -15406258 + LTR33 LTR ERVL 37 521 0 2297 125 0 0 chr9 102456573 102456885 -15405742 + AluSx SINE Alu 1 312 0 3585 175 8 6 chr9 102456948 102457578 -15405049 - MST-int LTR MaLR -252 1399 769 2243 148 39 2 chr9 102457587 102457993 -15404634 - MSTA LTR MaLR 0 428 8 182 299 15 15 chr9 102458060 102458127 -15404500 - L2 LINE L2 -2799 515 449 753 152 0 36 chr9 102458169 102458307 -15404320 - MER45A DNA AcHobo 0 178 46 681 248 27 7 chr9 102458385 102458534 -15404093 - MIR SINE MIR -95 167 16 360 317 19 0 chr9 102458652 102458756 -15403871 - MIR SINE MIR -150 112 7 5387 189 31 3 chr9 102458850 102460311 -15402316 + L1MC1 LINE L1 4821 6319 -14 349 272 18 35 chr9 102460384 102460498 -15402129 - MIR SINE MIR -119 143 32 702 94 0 0 chr9 102460511 102460607 -15402020 + L1PA5 LINE L1 3 98 -6048 * 32257 55 14 13 chr9 102460605 102461930 -15400697 + L1PA5 LINE L1 847 2170 -3984 6469 35 6 12 chr9 102461930 102463103 -15399524 + SVA Other Other 11 1373 -13 198 0 0 0 chr9 102463103 102463125 -15399502 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 6469 35 6 12 chr9 102463125 102463136 -15399491 + SVA Other Other 1373 1383 -3 32257 55 14 13 chr9 102463136 102467118 -15395509 + L1PA5 LINE L1 2170 6154 0 336 312 37 0 chr9 102467184 102467293 -15395334 - MIR SINE MIR -137 125 13 904 18 9 0 chr9 102467733 102467843 -15394784 - L1PA4 LINE L1 -3 6152 6042 462 272 197 0 chr9 102468336 102468483 -15394144 + MIR SINE MIR 66 241 -21 220 323 118 6 chr9 102468741 102468902 -15393725 - MIR3 SINE MIR -6 202 24 285 213 0 0 chr9 102469212 102469273 -15393354 + L1MC1 LINE L1 6161 6221 -112 180 0 0 0 chr9 102469279 102469299 -15393328 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 228 53 26 0 chr9 102469366 102469404 -15393223 + MADE1 DNA Mariner 42 80 0 2086 120 3 0 chr9 102470171 102470484 -15392143 + AluSp SINE Alu 1 314 0 415 302 189 0 chr9 102470824 102470983 -15391644 + MIR SINE MIR 4 192 -70 198 0 0 0 chr9 102471499 102471521 -15391106 + (TTA)n Simple_repeat Simple_repeat 3 24 0 1489 29 0 0 chr9 102471521 102471691 -15390936 - L1PA3 LINE L1 -18 6137 5968 760 127 28 21 chr9 102472506 102472648 -15389979 + L1MA8 LINE L1 6146 6288 -3 241 260 0 0 chr9 102472767 102472840 -15389787 - L1MC4a LINE L1 -1875 6431 6359 695 299 41 14 chr9 102472889 102473110 -15389517 + MIR SINE MIR 31 257 -5 722 311 99 57 chr9 102473467 102474356 -15388271 - L1MC4a LINE L1 -1161 5483 4558 285 146 0 0 chr9 102476251 102476299 -15386328 + (TA)n Simple_repeat Simple_repeat 1 48 0 7074 49 13 45 chr9 102476304 102477231 -15385396 - L1PA7 LINE L1 -16 6138 5225 2206 98 0 17 chr9 102477231 102477528 -15385099 + AluY SINE Alu 1 292 -19 7074 49 13 45 chr9 102477528 102477646 -15384981 - L1PA7 LINE L1 -929 5225 5105 1514 157 0 0 chr9 102478190 102478419 -15384208 - AluSg/x SINE Alu 0 310 82 589 135 21 21 chr9 102478428 102478524 -15384103 - FRAM SINE Alu -24 152 57 901 286 48 33 chr9 102478604 102479003 -15383624 - MLT1I LTR MaLR -4 405 1 485 296 61 43 chr9 102480381 102480611 -15382016 - L2 LINE L2 -1287 2027 1794 504 276 39 19 chr9 102480622 102480940 -15381687 - L1MC4a LINE L1 -4697 1947 1525 14772 190 92 6 chr9 102481300 102485620 -15377007 + L1PA13 LINE L1 1216 5981 -816 242 93 0 23 chr9 102485655 102485698 -15376929 + (CTG)n Simple_repeat Simple_repeat 2 43 0 5463 113 4 0 chr9 102485801 102486635 -15375992 + L1PA13 LINE L1 5971 6807 -7 938 78 0 0 chr9 102486635 102486751 -15375876 - AluY SINE Alu -16 295 180 2649 121 0 2 chr9 102486751 102487165 -15375462 + L1P4 LINE L1 5341 5753 -413 309 210 0 0 chr9 102487364 102487426 -15375201 + MLT1J LTR MaLR 1 62 -443 254 268 101 43 chr9 102487432 102487570 -15375057 + MIR SINE MIR 61 206 -56 1330 169 42 88 chr9 102488201 102488372 -15374255 + L1MC1 LINE L1 2716 2893 -3253 3473 56 29 0 chr9 102488372 102488818 -15373809 - L1PA6 LINE L1 -4 6150 5692 1330 169 42 88 chr9 102488818 102489125 -15373502 + L1MC1 LINE L1 2893 3172 -2974 1176 243 72 37 chr9 102489169 102489544 -15373083 + MLT1J LTR MaLR 26 413 -98 613 177 0 40 chr9 102489816 102489940 -15372687 - MER45A DNA AcHobo -14 164 46 646 230 79 0 chr9 102490017 102490156 -15372471 - MIR SINE MIR -97 165 16 382 301 29 0 chr9 102490230 102490333 -15372294 - MIR SINE MIR -150 112 7 5402 188 26 12 chr9 102490413 102490430 -15372197 + L1MC1 LINE L1 4820 4835 -1498 2280 143 104 0 chr9 102490430 102490816 -15371811 - MSTC LTR MaLR 0 428 3 5402 188 26 12 chr9 102490816 102492137 -15370490 + L1MC1 LINE L1 4835 6172 -161 2105 144 25 3 chr9 102492137 102492492 -15370135 - MER47A DNA MER2_type 0 366 4 5402 188 26 12 chr9 102492492 102492655 -15369972 + L1MC1 LINE L1 6172 6331 -2 458 270 9 0 chr9 102492706 102492817 -15369810 - MIR SINE MIR -119 143 32 312 310 26 18 chr9 102492861 102492974 -15369653 - MIR SINE MIR -136 126 13 283 333 0 10 chr9 102493069 102493171 -15369456 + (CATA)n Simple_repeat Simple_repeat 3 103 0 455 251 293 0 chr9 102493841 102494008 -15368619 + MIR SINE MIR 13 228 -34 357 338 56 6 chr9 102493993 102494153 -15368474 + L3 LINE CR1 1325 1492 -85 * 474 313 133 0 chr9 102495125 102495291 -15367336 + MIR SINE MIR 4 191 -71 2528 63 0 0 chr9 102496568 102496871 -15365756 - AluY SINE Alu -8 303 1 1487 88 66 0 chr9 102497028 102497255 -15365372 - L1PA8 LINE L1 0 6172 5931 667 299 37 9 chr9 102497344 102497561 -15365066 + MIR SINE MIR 40 262 0 410 309 120 61 chr9 102497676 102498865 -15363762 - L1MC/D LINE L1 -896 5250 4358 22 56 0 0 chr9 102498867 102498903 -15363724 + AT_rich Low_complexity Low_complexity 1 36 0 1846 181 14 119 chr9 102499691 102500253 -15362374 - L1PB4 LINE L1 -3 6153 5651 1670 151 19 3 chr9 102500230 102500554 -15362073 - L1PB4 LINE L1 -1305 4841 4513 * 1714 54 0 5 chr9 102500677 102500881 -15361746 + AluY SINE Alu 93 295 -16 1725 181 3 0 chr9 102502352 102502639 -15359988 - AluJo SINE Alu -17 295 8 197 307 57 79 chr9 102502662 102502802 -15359825 - L2 LINE L2 -189 3083 2947 971 306 15 24 chr9 102503068 102503480 -15359147 - MLT1I LTR MaLR 0 409 2 23 97 0 0 chr9 102504015 102504087 -15358540 + AT_rich Low_complexity Low_complexity 1 72 0 6602 82 18 0 chr9 102504148 102505065 -15357562 - L1PA10 LINE L1 0 6168 5236 344 307 74 12 chr9 102505919 102506163 -15356464 - L2 LINE L2 -1262 2052 1794 482 249 92 21 chr9 102506173 102506449 -15356178 - L1M4c LINE L1 -4806 1578 1278 230 305 21 0 chr9 102507082 102507177 -15355450 + L1MEc LINE L1 1542 1638 -4758 616 242 96 38 chr9 102507585 102507981 -15354646 + L1MC5 LINE L1 7499 7917 -44 2297 108 3 3 chr9 102508028 102508334 -15354293 - AluSp SINE Alu -7 306 1 372 290 183 13 chr9 102509098 102509322 -15353305 - MIR SINE MIR 0 262 1 2092 124 0 23 chr9 102509420 102509727 -15352900 - AluSg SINE Alu 0 310 11 1742 143 4 0 chr9 102509726 102509971 -15352656 - AluSx SINE Alu -66 246 1 * 22844 60 5 2 chr9 102510180 102513032 -15349595 + L1PA4 LINE L1 1 2860 -3286 21512 32 0 16 chr9 102513827 102517169 -15345458 + L1PA4 LINE L1 2827 6152 -3 1766 260 46 64 chr9 102517192 102517686 -15344941 + L1M4c LINE L1 972 1474 -4908 1033 86 7 0 chr9 102517686 102517826 -15344801 + L1PB1 LINE L1 6005 6145 -6 1766 260 46 64 chr9 102517826 102518335 -15344292 + L1M4c LINE L1 1474 2051 -4331 11728 198 54 35 chr9 102518652 102522105 -15340522 + L1P3 LINE L1 203 3725 -2736 4926 102 22 20 chr9 102522112 102522270 -15340357 + L1PA10 LINE L1 5452 5608 -560 2059 122 0 37 chr9 102522270 102522590 -15340037 + AluSx SINE Alu 1 309 0 4926 102 22 20 chr9 102522590 102523145 -15339482 + L1PA10 LINE L1 5608 6168 0 467 242 117 57 chr9 102523158 102523422 -15339205 + L1 LINE L1 3245 3524 -4041 * 1422 264 46 23 chr9 102523399 102523422 -15339205 + L1ME3 LINE L1 5327 5348 -814 6116 119 14 0 chr9 102523422 102523559 -15339068 + L1PA15 LINE L1 4255 4389 -1776 267 31 0 0 chr9 102523559 102523591 -15339036 + (CA)n Simple_repeat Simple_repeat 1 32 0 6116 119 14 0 chr9 102523591 102525335 -15337292 + L1PA15 LINE L1 4389 6165 0 1422 264 46 23 chr9 102525335 102525833 -15336794 + L1ME3 LINE L1 5348 5860 -302 364 248 38 91 chr9 102525904 102526114 -15336513 - L1ME3A LINE L1 -15 6155 5957 2393 169 10 17 chr9 102526122 102526602 -15336025 + L1 LINE L1 5554 6030 -1535 2049 142 3 16 chr9 102526606 102526772 -15335855 + AluSx SINE Alu 1 163 -149 4121 46 17 0 chr9 102526772 102527254 -15335373 + LTR2B LTR ERV1 1 490 0 2049 142 3 16 chr9 102527254 102527396 -15335231 + AluSx SINE Alu 163 305 -7 1518 190 3 37 chr9 102527408 102527708 -15334919 + AluJo SINE Alu 3 292 -20 3402 137 38 7 chr9 102527719 102528266 -15334361 - MER49 LTR ERV1 -356 567 4 233 390 6 12 chr9 102528293 102528465 -15334162 + L2 LINE L2 2847 3017 -255 197 338 13 0 chr9 102528496 102528573 -15334054 + L2 LINE L2 3231 3308 -5 212 294 98 10 chr9 102528941 102529043 -15333584 - L2 LINE L2 -223 3049 2939 312 248 241 14 chr9 102529881 102530022 -15332605 + MER5A DNA MER1_type 17 189 0 340 284 19 52 chr9 102530024 102530179 -15332448 + MER5A DNA MER1_type 16 165 -24 255 260 16 94 chr9 102530334 102530461 -15332166 + MIR SINE MIR 18 135 -73 1952 128 35 3 chr9 102530698 102530980 -15331647 + AluSq SINE Alu 1 291 -22 228 35 0 0 chr9 102530984 102531013 -15331614 + (GGGGA)n Simple_repeat Simple_repeat 3 31 0 545 214 0 0 chr9 102531013 102531111 -15331516 - MER81 DNA DNA -16 98 1 350 85 17 0 chr9 102531220 102531279 -15331348 + (TTCC)n Simple_repeat Simple_repeat 1 60 0 325 252 162 0 chr9 102531397 102531508 -15331119 - L2 LINE L2 -1 3271 3143 491 316 50 53 chr9 102531585 102531942 -15330685 + L1MC/D LINE L1 4942 5297 -849 1962 161 0 0 chr9 102531946 102532231 -15330396 + AluSx SINE Alu 3 287 -25 1025 280 47 7 chr9 102532251 102532628 -15329999 + L1MC/D LINE L1 5288 5672 -490 29 47 0 0 chr9 102532857 102532900 -15329727 + AT_rich Low_complexity Low_complexity 1 43 0 423 343 6 0 chr9 102532975 102533144 -15329483 + MER117 DNA MER1_type 2 171 -26 2258 128 0 0 chr9 102533415 102533720 -15328907 + AluSx SINE Alu 1 305 -7 2592 102 3 26 chr9 102533750 102533908 -15328719 + THE1C LTR MaLR 3 163 -212 2436 72 0 41 chr9 102533908 102534226 -15328401 - AluY SINE Alu -6 305 1 2592 102 3 26 chr9 102534226 102534449 -15328178 + THE1C LTR MaLR 163 375 0 200 194 107 39 chr9 102534677 102534780 -15327847 - L2 LINE L2 -637 2677 2568 343 329 54 0 chr9 102535141 102535290 -15327337 + L2 LINE L2 3114 3270 -2 279 93 0 0 chr9 102535327 102535370 -15327257 + (CATA)n Simple_repeat Simple_repeat 2 44 0 1567 207 24 45 chr9 102536694 102537076 -15325551 + MLT1A2 LTR MaLR 1 374 0 438 324 14 7 chr9 102537317 102537465 -15325162 - MIR SINE MIR -108 154 6 211 167 24 0 chr9 102537539 102537581 -15325046 + L2 LINE L2 3267 3309 -4 1874 165 18 18 chr9 102537669 102537752 -15324875 + MER44D DNA MER2_type 1 83 -2408 2164 117 0 7 chr9 102537752 102538096 -15324531 + AluSx SINE Alu 1 342 0 225 0 0 0 chr9 102538095 102538120 -15324507 + (TA)n Simple_repeat Simple_repeat 2 26 0 1874 165 18 18 chr9 102538096 102538374 -15324253 + MER44D DNA MER2_type 82 609 0 336 264 207 0 chr9 102538636 102538757 -15323870 - MIR SINE MIR -14 248 103 459 250 0 0 chr9 102539025 102539125 -15323502 - L2 LINE L2 0 3313 3214 769 161 0 51 chr9 102539126 102539263 -15323364 + FLAM_A SINE Alu 4 133 0 2130 118 13 16 chr9 102539263 102539577 -15323050 + AluSq SINE Alu 1 313 0 2276 112 3 0 chr9 102539589 102539884 -15322743 + AluSp SINE Alu 1 296 -17 354 223 39 62 chr9 102539911 102540041 -15322586 - MIR3 SINE MIR -80 128 2 1428 104 65 139 chr9 102541335 102541476 -15321151 + AluJo SINE Alu 1 151 -161 2418 120 13 16 chr9 102541476 102541850 -15320777 + L1PA12 LINE L1 5794 6166 -2 1428 104 65 139 chr9 102541850 102541861 -15320766 + AluJo SINE Alu 151 161 -151 2114 69 0 47 chr9 102541861 102542159 -15320468 + AluY SINE Alu 22 306 0 1428 104 65 139 chr9 102542159 102542313 -15320314 + AluJo SINE Alu 161 286 -26 288 284 50 14 chr9 102542665 102542806 -15319821 + (TTAGGG)n Simple_repeat Simple_repeat 1 146 0 2145 104 0 11 chr9 102542915 102543195 -15319432 + AluSx SINE Alu 1 277 -35 345 24 0 0 chr9 102543200 102543242 -15319385 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 2288 90 0 31 chr9 102544411 102544732 -15317895 + AluY SINE Alu 1 311 0 344 186 17 0 chr9 102544737 102544796 -15317831 - MER81 DNA DNA -54 60 1 7046 60 1 14 chr9 102545962 102546972 -15315655 + L1PA7 LINE L1 4480 5472 -682 2393 82 7 0 chr9 102546972 102547266 -15315361 + AluSg1 SINE Alu 1 296 -13 7046 60 1 14 chr9 102547266 102547941 -15314686 + L1PA7 LINE L1 5472 6154 0 2171 123 0 19 chr9 102549900 102550216 -15312411 - AluSx SINE Alu -2 310 1 537 236 61 62 chr9 102550221 102550508 -15312119 - L1MEc LINE L1 -862 1714 1438 294 208 0 194 chr9 102550725 102550809 -15311818 - MIR3 SINE MIR -9 199 153 2107 44 0 12 chr9 102550809 102551061 -15311566 + AluY SINE Alu 62 310 -1 294 208 0 194 chr9 102551061 102551120 -15311507 - MIR3 SINE MIR -55 153 84 1995 155 3 0 chr9 102552472 102552768 -15309859 + AluSx SINE Alu 1 297 -15 677 328 175 11 chr9 102552804 102553353 -15309274 - L2 LINE L2 -1690 1624 986 599 219 18 0 chr9 102553359 102553473 -15309154 + FLAM_A SINE Alu 6 121 -21 229 188 62 0 chr9 102554169 102554217 -15308410 - MIR SINE MIR -101 161 111 234 148 0 0 chr9 102554703 102554757 -15307870 + (A)n Simple_repeat Simple_repeat 1 54 0 438 230 71 0 chr9 102554880 102554993 -15307634 - MIR3 SINE MIR -30 178 58 230 231 15 15 chr9 102555667 102555732 -15306895 - MIR3 SINE MIR -50 158 94 207 293 0 0 chr9 102555809 102555867 -15306760 - MIR SINE MIR 0 262 205 2406 93 0 0 chr9 102556098 102556399 -15306228 + AluSg SINE Alu 1 301 -9 273 292 131 30 chr9 102556452 102556620 -15306007 + MARNA DNA Mariner 31 215 -371 2261 114 0 13 chr9 102557091 102557407 -15305220 + AluSq SINE Alu 1 312 -1 2005 130 67 0 chr9 102557880 102558196 -15304431 + MER1B DNA MER1_type 1 337 0 2374 94 0 0 chr9 102558430 102558727 -15303900 + AluSx SINE Alu 1 297 -15 1502 199 21 3 chr9 102559164 102559450 -15303177 - AluJo SINE Alu -21 291 1 1112 213 4 51 chr9 102561143 102561416 -15301211 + AluJo SINE Alu 1 260 -52 2535 62 0 3 chr9 102561458 102561766 -15300861 + AluY SINE Alu 1 307 -4 1925 144 3 3 chr9 102562733 102563018 -15299609 + AluSx SINE Alu 1 285 -27 2846 166 34 88 chr9 102563072 102563191 -15299436 - L1MD2 LINE L1 -2 6357 6233 1726 163 36 13 chr9 102563191 102563492 -15299135 - AluJb SINE Alu -4 308 1 2846 166 34 88 chr9 102563492 102564115 -15298512 - L1MD2 LINE L1 -126 6233 5655 1206 224 40 37 chr9 102564280 102564579 -15298048 - MLT1E LTR MaLR 0 593 294 2304 142 35 26 chr9 102564579 102565001 -15297626 + MSTB LTR MaLR 1 426 0 3223 149 4 0 chr9 102565001 102565512 -15297115 + MSTB-int LTR MaLR 1 513 -1138 24 0 0 0 chr9 102567663 102567687 -15294940 + AT_rich Low_complexity Low_complexity 1 24 0 44 20 0 0 chr9 102568879 102568930 -15293697 + AT_rich Low_complexity Low_complexity 1 51 0 2318 92 7 0 chr9 102569339 102569632 -15292995 - AluSx SINE Alu -17 295 1 207 0 0 0 chr9 102569793 102569816 -15292811 + (TAGA)n Simple_repeat Simple_repeat 4 26 0 1943 108 32 7 chr9 102569817 102570094 -15292533 - AluSg SINE Alu -26 284 1 2381 41 0 35 chr9 102570815 102571131 -15291496 + SVA Other Other 1 305 -1081 2332 98 3 10 chr9 102572683 102572990 -15289637 - AluSx SINE Alu -7 305 1 1107 230 70 40 chr9 102573179 102573553 -15289074 - MLT1B LTR MaLR -5 385 1 278 308 213 0 chr9 102573642 102573811 -15288816 + MIR SINE MIR 11 215 -47 471 171 0 0 chr9 102573811 102573887 -15288740 + AluJ/FLAM SINE Alu 1 76 -236 4330 47 0 4 chr9 102573887 102574401 -15288226 + MER11D LTR ERVK 1 512 -385 238 213 75 117 chr9 102575063 102575215 -15287412 + L1ME4a LINE L1 5935 6079 -42 2321 93 0 7 chr9 102575215 102575516 -15287111 - AluSx SINE Alu -13 299 1 238 213 75 117 chr9 102575516 102575551 -15287076 + L1ME4a LINE L1 6079 6114 -7 352 208 56 42 chr9 102575621 102575765 -15286862 + MLT1I LTR MaLR 47 192 -357 363 271 19 84 chr9 102575872 102576027 -15286600 + MLT1I LTR MaLR 230 374 -35 376 318 117 21 chr9 102576035 102576608 -15286019 + L1M4 LINE L1 4431 5058 -1088 1186 131 0 0 chr9 102576610 102576778 -15285849 - AluSg/x SINE Alu -16 296 129 2378 40 0 0 chr9 102576879 102577152 -15285475 - AluY SINE Alu -38 273 1 1360 241 75 15 chr9 102577198 102577597 -15285030 - L1M4 LINE L1 -2266 3880 3458 686 224 23 11 chr9 102577625 102577799 -15284828 + LTR41 LTR ERVL 4 179 -594 319 190 12 17 chr9 102578251 102578331 -15284296 + LTR41 LTR ERVL 705 794 -1 436 243 70 117 chr9 102578333 102578581 -15284046 + MLT1F1 LTR MaLR 25 285 -269 255 143 0 0 chr9 102578588 102578630 -15283997 - MSTB LTR MaLR 0 426 385 2401 85 7 0 chr9 102578632 102578939 -15283688 + AluSc SINE Alu 1 309 0 896 156 78 12 chr9 102578964 102579131 -15283496 - MSTB LTR MaLR -25 401 224 1223 123 0 0 chr9 102579235 102579406 -15283221 + AluSg/x SINE Alu 129 299 -13 189 348 73 0 chr9 102579543 102579657 -15282970 + MIR SINE MIR 20 140 -68 313 203 57 26 chr9 102579817 102579923 -15282704 - MIR SINE MIR -65 143 37 3652 120 9 6 chr9 102579928 102580453 -15282174 - MER1A DNA MER1_type 0 527 1 472 199 41 87 chr9 102580706 102580733 -15281894 - MIR SINE MIR -62 200 173 893 166 25 75 chr9 102580733 102580932 -15281695 - MER5A DNA MER1_type 0 189 1 472 199 41 87 chr9 102580932 102581100 -15281527 - MIR SINE MIR -89 173 14 2299 99 3 0 chr9 102581130 102581422 -15281205 + AluSx SINE Alu 1 293 -19 1362 124 221 8 chr9 102581471 102581720 -15280907 - AluJb SINE Alu 0 302 1 6756 83 23 40 chr9 102582057 102583313 -15279314 + SVA Other Other 433 1385 -1 2141 121 17 0 chr9 102583385 102583675 -15278952 + AluSx SINE Alu 1 295 -17 2077 106 13 48 chr9 102584737 102585049 -15277578 + AluSx SINE Alu 1 301 -11 24 0 0 0 chr9 102585479 102585503 -15277124 + AT_rich Low_complexity Low_complexity 1 24 0 1727 189 0 14 chr9 102586167 102586464 -15276163 - AluJb SINE Alu -14 298 6 743 195 65 16 chr9 102586938 102587123 -15275504 + L1MC5 LINE L1 7724 7917 -44 588 229 104 15 chr9 102587369 102587570 -15275057 + MIR SINE MIR 40 258 -4 987 249 29 0 chr9 102588325 102588566 -15274061 - MIR SINE MIR -10 252 5 887 114 30 15 chr9 102589174 102589305 -15273322 - FLAM_C SINE Alu 0 133 1 22 0 0 0 chr9 102590110 102590132 -15272495 + AT_rich Low_complexity Low_complexity 1 22 0 1908 164 0 19 chr9 102590317 102590628 -15271999 - AluJo SINE Alu -7 305 1 481 266 0 16 chr9 102590800 102590924 -15271703 + L2 LINE L2 3191 3312 -1 279 211 0 0 chr9 102590924 102590976 -15271651 + L2 LINE L2 3261 3312 -1 21 0 0 0 chr9 102591013 102591034 -15271593 + AT_rich Low_complexity Low_complexity 1 21 0 2574 70 3 0 chr9 102591123 102591435 -15271192 + AluSp SINE Alu 1 313 0 191 200 100 71 chr9 102591886 102591956 -15270671 - MIR SINE MIR 0 262 191 21 36 0 0 chr9 102592490 102592518 -15270109 + AT_rich Low_complexity Low_complexity 1 28 0 2341 93 10 0 chr9 102592527 102592827 -15269800 + AluSx SINE Alu 1 303 -9 1877 151 69 9 chr9 102592862 102593212 -15269415 - L1MB7 LINE L1 -41 6143 5773 2317 88 3 3 chr9 102593657 102593951 -15268676 - AluSp SINE Alu -19 294 1 830 236 21 30 chr9 102594298 102594535 -15268092 - MIR SINE MIR 0 262 28 2239 104 0 13 chr9 102594540 102594838 -15267789 - AluY SINE Alu -17 294 1 243 283 58 75 chr9 102595001 102595121 -15267506 - MIR3 SINE MIR -49 159 42 31 0 0 0 chr9 102596035 102596066 -15266561 + AT_rich Low_complexity Low_complexity 1 31 0 6103 70 20 16 chr9 102596281 102597317 -15265310 + SVA Other Other 1 866 -520 7011 59 3 84 chr9 102597383 102598690 -15263937 + SVA Other Other 432 1386 0 492 18 0 0 chr9 102598754 102598811 -15263816 + (TG)n Simple_repeat Simple_repeat 2 58 0 2231 104 0 23 chr9 102598811 102599120 -15263507 - AluSq SINE Alu -11 302 1 2160 113 3 23 chr9 102599475 102599784 -15262843 - AluSx SINE Alu -9 303 1 2243 106 0 0 chr9 102600007 102600289 -15262338 + AluSx SINE Alu 1 282 -30 368 20 20 0 chr9 102600292 102600341 -15262286 + (CAAA)n Simple_repeat Simple_repeat 2 51 0 599 219 18 0 chr9 102600510 102600624 -15262003 - FLAM_A SINE Alu -21 121 6 697 326 175 11 chr9 102600630 102601179 -15261448 + L2 LINE L2 986 1624 -1690 2256 65 0 81 chr9 102601215 102601537 -15261090 - AluY SINE Alu -15 296 1 347 356 58 4 chr9 102601537 102601798 -15260829 + L2 LINE L2 3023 3297 -16 1006 174 0 6 chr9 102601831 102601992 -15260635 - AluJo SINE Alu -152 160 1 741 299 172 10 chr9 102602021 102602429 -15260198 + L2 LINE L2 2322 2795 -519 2069 109 32 3 chr9 102602516 102602800 -15259827 - AluSx SINE Alu -20 292 1 21 89 0 0 chr9 102602901 102602957 -15259670 + AT_rich Low_complexity Low_complexity 1 56 0 1724 145 57 18 chr9 102603346 102603629 -15258998 + AluJb SINE Alu 2 295 -17 1166 145 0 0 chr9 102603720 102603899 -15258728 - AluSg/x SINE Alu 0 310 132 1721 201 0 7 chr9 102604421 102604729 -15257898 - AluJb SINE Alu -1 311 6 569 199 94 0 chr9 102605341 102605500 -15257127 + MER58A DNA MER1_type 49 223 -1 422 347 94 37 chr9 102605541 102606208 -15256419 - L2 LINE L2 -221 3051 2350 2176 121 0 0 chr9 102606260 102606557 -15256070 + AluSx SINE Alu 1 297 -15 1505 199 21 3 chr9 102606994 102607280 -15255347 - AluJo SINE Alu -21 291 1 2410 74 0 13 chr9 102608174 102608484 -15254143 - AluY SINE Alu -5 306 1 266 280 212 0 chr9 102608504 102608636 -15253991 + MIR SINE MIR 99 258 -4 2044 122 6 29 chr9 102608660 102608971 -15253656 - AluSx SINE Alu -8 304 1 2315 97 7 0 chr9 102609028 102609326 -15253301 + AluSx SINE Alu 1 300 -12 194 368 59 73 chr9 102610898 102611118 -15251509 - L2 LINE L2 -88 3184 2968 1725 121 114 11 chr9 102611119 102611399 -15251228 + AluSx SINE Alu 1 309 -3 211 341 24 0 chr9 102611503 102611585 -15251042 - L2 LINE L2 -504 2810 2727 713 248 28 0 chr9 102611598 102611743 -15250884 - AluJb SINE Alu -32 280 132 328 222 157 37 chr9 102611743 102611851 -15250776 - L2 LINE L2 -570 2744 2624 761 162 0 15 chr9 102611893 102612029 -15250598 + FRAM SINE Alu 37 170 -6 1694 174 3 42 chr9 102613613 102613924 -15248703 + AluJo SINE Alu 1 299 -13 2300 86 3 0 chr9 102613927 102614218 -15248409 + AluY SINE Alu 1 292 -19 1413 231 59 66 chr9 102614391 102614485 -15248142 + L1MC4 LINE L1 7448 7541 -501 2263 110 3 0 chr9 102614485 102614786 -15247841 + AluSx SINE Alu 1 302 -10 1413 231 59 66 chr9 102614786 102615285 -15247342 + L1MC4 LINE L1 7541 8037 -5 392 267 30 46 chr9 102615322 102615453 -15247174 - MIR3 SINE MIR -23 185 57 284 53 0 0 chr9 102615453 102615491 -15247136 - MADE1 DNA Mariner -42 38 1 1821 171 35 19 chr9 102615581 102615782 -15246845 - L1MB5 LINE L1 -30 6144 5948 2103 117 0 7 chr9 102615782 102616104 -15246523 - AluSx SINE Alu 0 320 1 1821 171 35 19 chr9 102616104 102616469 -15246158 - L1MB5 LINE L1 -226 5948 5479 705 217 0 7 chr9 102616484 102616622 -15246005 + FRAM SINE Alu 28 164 -12 711 233 28 0 chr9 102616628 102616808 -15245819 - L1MB5 LINE L1 -717 5463 5279 318 245 10 36 chr9 102617002 102617162 -15245465 - L1MC5 LINE L1 -733 7228 7100 225 266 25 13 chr9 102617218 102617297 -15245330 - L1MC4a LINE L1 -883 6925 6846 347 158 0 0 chr9 102617321 102617378 -15245249 - AluJ/FLAM SINE Alu -225 77 21 1813 267 133 44 chr9 102617413 102617656 -15244971 - L1MC4a LINE L1 -1034 6774 6554 2175 116 7 3 chr9 102617656 102617959 -15244668 - AluSq SINE Alu -9 304 1 1813 267 133 44 chr9 102617959 102618945 -15243682 - L1MC4a LINE L1 -1254 6554 5436 676 272 75 57 chr9 102618949 102619387 -15243240 - L1MC4a LINE L1 -812 5334 4889 299 296 7 7 chr9 102619387 102619522 -15243105 + L1M4 LINE L1 4979 5113 -1033 1970 143 3 0 chr9 102619774 102620068 -15242559 + AluJb SINE Alu 1 295 -17 956 243 32 108 chr9 102620737 102620927 -15241700 + L2 LINE L2 1561 1764 -1550 2395 100 0 10 chr9 102620927 102621237 -15241390 - AluSx SINE Alu -5 307 1 956 243 32 108 chr9 102621237 102621544 -15241083 + L2 LINE L2 1764 2020 -1294 279 264 23 23 chr9 102621534 102621621 -15241006 + L2 LINE L2 3227 3313 0 * 195 234 43 0 chr9 102621713 102621760 -15240867 - L2 LINE L2 0 3313 3265 260 250 0 0 chr9 102621813 102621861 -15240766 + L2 LINE L2 3132 3179 -93 1857 160 3 10 chr9 102622028 102622328 -15240299 - AluJb SINE Alu -14 298 1 2305 68 7 3 chr9 102622332 102622625 -15240002 - AluY SINE Alu -17 294 1 2076 122 3 3 chr9 102623126 102623412 -15239215 + AluSx SINE Alu 1 286 -26 435 156 184 28 chr9 102623496 102623637 -15238990 + L1MD3 LINE L1 7822 7984 -11 417 321 51 7 chr9 102623753 102623890 -15238737 + MIR SINE MIR 47 189 -73 2448 55 3 0 chr9 102623893 102624186 -15238441 + AluY SINE Alu 1 294 -17 1002 287 97 56 chr9 102624196 102624512 -15238115 - L2 LINE L2 -8 3305 2951 2280 115 0 0 chr9 102624512 102624817 -15237810 + AluSx SINE Alu 1 305 -7 1002 287 97 56 chr9 102624817 102624996 -15237631 - L2 LINE L2 -362 2951 2781 1929 148 0 30 chr9 102625075 102625380 -15237247 - AluJb SINE Alu -14 298 3 391 223 83 0 chr9 102625411 102625532 -15237095 - MER104 DNA Tc2 -2 178 48 245 276 122 24 chr9 102625710 102625833 -15236794 + MIR SINE MIR 125 259 -3 1067 98 257 0 chr9 102625943 102626126 -15236501 + MER30 DNA MER1_type 1 230 0 298 50 0 0 chr9 102626603 102626643 -15235984 - MADE1 DNA Mariner 0 80 41 2283 110 0 10 chr9 102626655 102626965 -15235662 + AluSx SINE Alu 1 307 -5 970 101 44 13 chr9 102626968 102627126 -15235501 + MER30 DNA MER1_type 65 227 -3 271 128 21 0 chr9 102627126 102627171 -15235456 - MADE1 DNA Mariner -33 47 2 2207 118 3 0 chr9 102628383 102628680 -15233947 + AluSp SINE Alu 2 299 -14 2173 104 43 0 chr9 102629005 102629304 -15233323 - AluSx SINE Alu 0 312 1 2241 102 3 10 chr9 102631498 102631803 -15230824 - AluSg SINE Alu -7 303 1 2548 56 0 3 chr9 102631840 102632145 -15230482 - AluSp SINE Alu -9 304 1 1185 155 66 47 chr9 102632391 102632477 -15230150 - MER33 DNA MER1_type -2261 324 241 2032 122 10 23 chr9 102632477 102632781 -15229846 + AluSx SINE Alu 1 300 -12 1185 155 66 47 chr9 102632781 102633011 -15229616 - MER33 DNA MER1_type -2344 241 2 308 43 0 21 chr9 102635202 102635249 -15227378 + (TCC)n Simple_repeat Simple_repeat 2 47 0 253 226 31 157 chr9 102635981 102636140 -15226487 - MIR SINE MIR -6 256 118 2130 101 0 13 chr9 102636166 102636472 -15226155 + AluSg SINE Alu 2 303 -7 301 310 0 0 chr9 102636844 102636931 -15225696 - L1MC4 LINE L1 -1339 6703 6617 200 184 20 0 chr9 102636933 102636982 -15225645 + (TA)n Simple_repeat Simple_repeat 1 50 0 2118 104 3 20 chr9 102636982 102637280 -15225347 - AluSx SINE Alu -19 293 1 1811 143 14 0 chr9 102637379 102637665 -15224962 - AluSx SINE Alu -21 291 2 471 289 164 4 chr9 102637666 102637891 -15224736 + L2 LINE L2 3051 3311 -2 21 0 0 0 chr9 102638314 102638335 -15224292 + AT_rich Low_complexity Low_complexity 1 21 0 185 314 132 16 chr9 102638835 102638956 -15223671 - MIR3 SINE MIR -5 203 69 751 246 85 27 chr9 102639613 102639906 -15222721 + L1ME1 LINE L1 5838 6147 -19 23 0 0 0 chr9 102642534 102642557 -15220070 + AT_rich Low_complexity Low_complexity 1 23 0 213 39 0 0 chr9 102643098 102643124 -15219503 + (TCC)n Simple_repeat Simple_repeat 2 27 0 2330 71 0 0 chr9 102643427 102643721 -15218906 - AluSq SINE Alu -19 294 1 2437 39 0 26 chr9 102644043 102644349 -15218278 - AluY SINE Alu -13 298 1 2364 86 0 0 chr9 102644613 102644914 -15217713 - AluSx SINE Alu -11 301 1 2635 36 7 0 chr9 102644933 102645239 -15217388 - AluY SINE Alu -3 308 1 21 0 0 0 chr9 102645727 102645748 -15216879 + AT_rich Low_complexity Low_complexity 1 21 0 551 258 48 16 chr9 102646215 102646339 -15216288 + L2 LINE L2 3145 3272 0 21 0 0 0 chr9 102646993 102647014 -15215613 + AT_rich Low_complexity Low_complexity 1 21 0 259 275 11 66 chr9 102647191 102647282 -15215345 + MIR3 SINE MIR 89 174 -34 248 361 56 7 chr9 102650771 102650915 -15211712 + L2 LINE L2 2608 2758 -556 2255 111 3 0 chr9 102651564 102651870 -15210757 + AluSp SINE Alu 1 307 -6 2136 145 0 0 chr9 102651872 102652182 -15210445 + AluSg SINE Alu 1 310 0 233 342 13 0 chr9 102652485 102652564 -15210063 + L2 LINE L2 3225 3304 -9 2233 102 20 0 chr9 102652823 102653127 -15209500 + AluY SINE Alu 1 310 -1 1973 159 45 3 chr9 102653722 102654055 -15208572 + MER7A DNA MER2_type 2 346 0 1658 128 6 116 chr9 102654530 102654857 -15207770 - AluJo SINE Alu -8 304 14 1691 163 14 0 chr9 102655006 102655282 -15207345 + AluJb SINE Alu 1 280 -32 243 0 0 0 chr9 102655284 102655311 -15207316 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 316 252 42 70 chr9 102655311 102655454 -15207173 - MIR SINE MIR -67 195 57 2300 102 0 13 chr9 102655512 102655680 -15206947 - AluSq SINE Alu -12 301 137 2212 85 41 0 chr9 102655680 102655973 -15206654 - AluSp SINE Alu -8 305 1 2300 102 0 13 chr9 102655973 102656109 -15206518 - AluSq SINE Alu -176 137 1 2318 58 41 17 chr9 102656147 102656441 -15206186 + AluY SINE Alu 1 301 -10 326 191 59 0 chr9 102656496 102656564 -15206063 + L1ME3A LINE L1 6094 6165 -5 193 300 100 55 chr9 102656952 102657062 -15205565 + L2 LINE L2 2503 2617 -697 2200 108 3 0 chr9 102657731 102658049 -15204578 - AluSx SINE Alu 0 319 1 1116 111 6 44 chr9 102658205 102658386 -15204241 - AluSg/x SINE Alu -2 308 135 186 363 180 26 chr9 102658758 102659102 -15203525 - L2 LINE L2 -635 2679 2283 644 249 154 0 chr9 102659342 102659543 -15203084 + MIR SINE MIR 1 232 -30 515 339 122 21 chr9 102659674 102660232 -15202395 + L2 LINE L2 1860 2473 -841 180 111 0 0 chr9 102660788 102660815 -15201812 + (CATA)n Simple_repeat Simple_repeat 2 28 0 190 317 228 0 chr9 102660822 102660923 -15201704 + L2 LINE L2 3122 3245 -27 233 213 82 0 chr9 102662150 102662211 -15200416 - L1MB4 LINE L1 -1 6179 6114 577 163 0 0 chr9 102662214 102662300 -15200327 - AluJ/FLAM SINE Alu -225 87 2 2744 225 30 19 chr9 102662300 102662433 -15200194 - L1M4c LINE L1 -3105 3277 3147 2243 96 10 16 chr9 102662433 102662746 -15199881 - AluSp SINE Alu -2 311 1 2744 225 30 19 chr9 102662746 102663343 -15199284 - L1M4c LINE L1 -3235 3147 2558 1230 158 43 136 chr9 102663343 102663553 -15199074 - AluSx SINE Alu 0 302 154 2129 87 40 0 chr9 102663553 102663828 -15198799 - AluSg SINE Alu -24 286 1 1230 158 43 136 chr9 102663828 102663969 -15198658 - AluSx SINE Alu -148 154 1 2744 225 30 19 chr9 102663969 102663981 -15198646 - L1M4c LINE L1 -3824 2558 2548 2643 55 0 3 chr9 102663981 102664292 -15198335 - AluY SINE Alu -1 310 1 2744 225 30 19 chr9 102664292 102664372 -15198255 - L1M4c LINE L1 -3834 2548 2444 990 167 59 115 chr9 102664429 102664584 -15198043 - AluJo SINE Alu -24 288 155 252 0 0 0 chr9 102664584 102664612 -15198015 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 990 167 59 115 chr9 102664612 102664743 -15197884 - AluJo SINE Alu -157 155 18 440 182 0 0 chr9 102664751 102664817 -15197810 - AluJ/FLAM SINE Alu -244 68 3 4303 169 151 17 chr9 102664864 102665261 -15197366 - L1M4c LINE L1 -3961 2423 2081 2208 96 7 10 chr9 102665261 102665553 -15197074 - AluSx SINE Alu -19 293 3 4303 169 151 17 chr9 102665553 102666259 -15196368 - L1M4c LINE L1 -4303 2081 1172 3363 192 78 130 chr9 102666256 102667020 -15195607 + L1M4c LINE L1 33 836 -4546 * 261 89 67 44 chr9 102667020 102667065 -15195562 + AluJo SINE Alu 90 135 -167 3363 192 78 130 chr9 102667065 102667229 -15195398 + L1M4c LINE L1 836 1007 -4375 2211 114 7 7 chr9 102667229 102667537 -15195090 + AluSx SINE Alu 1 308 -4 3363 192 78 130 chr9 102667537 102667626 -15195001 + L1M4c LINE L1 1007 1099 -4283 2004 123 21 0 chr9 102667626 102667910 -15194717 + AluSg SINE Alu 1 290 -20 3363 192 78 130 chr9 102667910 102668044 -15194583 + L1M4c LINE L1 1099 1242 -4140 942 112 0 70 chr9 102669243 102669386 -15193241 - FLAM_C SINE Alu 0 133 1 29 0 0 0 chr9 102669386 102669415 -15193212 + AT_rich Low_complexity Low_complexity 1 29 0 917 132 63 25 chr9 102669931 102670090 -15192537 + FAM SINE Alu 1 165 -10 279 307 44 0 chr9 102670382 102670496 -15192131 + MIR SINE MIR 132 250 -12 216 0 0 0 chr9 102672078 102672102 -15190525 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2191 109 16 0 chr9 102672309 102672613 -15190014 + AluSg SINE Alu 1 309 -1 809 227 12 18 chr9 102672781 102672944 -15189683 + FRAM SINE Alu 5 166 0 2128 71 71 17 chr9 102672987 102673283 -15189344 - AluSq SINE Alu -1 312 1 2582 44 0 0 chr9 102673586 102673880 -15188747 + AluY SINE Alu 1 294 -17 1409 196 0 15 chr9 102674144 102674410 -15188217 - AluJo SINE Alu -16 296 35 616 146 0 0 chr9 102674429 102674525 -15188102 - AluSg/x SINE Alu 0 312 217 1988 90 0 23 chr9 102674525 102674791 -15187836 - AluSx SINE Alu -52 260 1 251 81 27 0 chr9 102674809 102674846 -15187781 + U3 snRNA snRNA 1 38 -179 742 87 58 0 chr9 102675904 102676008 -15186619 - HY1 scRNA scRNA -1 111 2 1744 182 87 11 chr9 102677041 102677421 -15185206 + L1MB3 LINE L1 5774 6182 -1 369 0 0 0 chr9 102677957 102677998 -15184629 + (CA)n Simple_repeat Simple_repeat 2 42 0 187 356 37 7 chr9 102678140 102678275 -15184352 - L2 LINE L2 -575 2739 2601 * 373 333 130 5 chr9 102678271 102678487 -15184140 + MIR SINE MIR 20 262 0 2329 110 3 19 chr9 102679008 102679145 -15183482 + AluSx SINE Alu 1 139 -173 2321 108 0 3 chr9 102679145 102679459 -15183168 + AluSq SINE Alu 1 313 0 2329 110 3 19 chr9 102679459 102679638 -15182989 + AluSx SINE Alu 139 312 0 211 344 75 11 chr9 102679819 102679912 -15182715 - L2 LINE L2 -307 2965 2867 339 85 0 0 chr9 102680267 102680314 -15182313 + (T)n Simple_repeat Simple_repeat 1 47 0 336 341 98 0 chr9 102680501 102680624 -15182003 + L2 LINE L2 3111 3245 -27 1713 177 3 10 chr9 102681488 102681787 -15180840 - AluJo SINE Alu -15 297 1 305 196 0 0 chr9 102682098 102682149 -15180478 + Alu SINE Alu 1 51 -251 2402 75 0 31 chr9 102682163 102682482 -15180145 - AluY SINE Alu -2 309 1 1083 165 0 0 chr9 102682496 102682660 -15179967 + FRAM SINE Alu 1 156 -20 21 0 0 0 chr9 102682972 102682993 -15179634 + AT_rich Low_complexity Low_complexity 1 21 0 260 281 148 81 chr9 102683159 102683320 -15179307 - MIR SINE MIR -16 246 66 2382 85 3 0 chr9 102683320 102683613 -15179014 - AluSc SINE Alu -15 294 1 260 281 148 81 chr9 102683613 102683661 -15178966 - MIR SINE MIR -196 66 23 526 234 114 18 chr9 102683775 102683942 -15178685 - L2 LINE L2 -9 3304 3122 292 325 166 12 chr9 102683989 102684158 -15178469 - L2 LINE L2 -3118 196 2 403 308 46 8 chr9 102684699 102684829 -15177798 + MIR SINE MIR 13 147 -115 243 262 143 12 chr9 102685443 102685527 -15177100 + MIR SINE MIR 41 135 -73 2188 54 0 0 chr9 102686323 102686582 -15176045 + AluY SINE Alu 41 299 -12 545 256 0 8 chr9 102687683 102687800 -15174827 - L2 LINE L2 -5 3308 3193 222 273 81 40 chr9 102688246 102688345 -15174282 - L2 LINE L2 -106 3207 3105 380 192 0 119 chr9 102688350 102688404 -15174223 - Tigger6 DNA MER2_type -78 1519 1460 1667 89 0 0 chr9 102688404 102688618 -15174009 + L1PA5 LINE L1 5940 6153 -1 380 192 0 119 chr9 102688618 102688642 -15173985 - Tigger6 DNA MER2_type -137 1460 1435 1736 184 3 3 chr9 102688642 102688936 -15173691 + AluJb SINE Alu 2 295 -17 380 192 0 119 chr9 102688936 102689007 -15173620 - Tigger6 DNA MER2_type -162 1435 1387 399 295 145 38 chr9 102689029 102689363 -15173264 - L2 LINE L2 -259 3054 2690 1090 292 123 16 chr9 102689374 102689805 -15172822 + L1M4b LINE L1 11 487 -6372 3509 266 56 16 chr9 102689814 102691533 -15171094 + L1M4b LINE L1 617 2396 -4563 336 197 28 14 chr9 102691599 102691670 -15170957 - L1M4 LINE L1 -3120 3026 2955 393 309 15 57 chr9 102691801 102692066 -15170561 + L1M4b LINE L1 2477 2730 -4408 1421 200 0 41 chr9 102692165 102692455 -15170172 + AluJb SINE Alu 25 302 -10 5943 236 97 23 chr9 102692457 102693042 -15169585 + L1M4b LINE L1 2787 3328 -3629 901 109 0 23 chr9 102693042 102693170 -15169457 + FLAM_C SINE Alu 2 126 -7 5943 236 97 23 chr9 102693170 102694621 -15168006 + L1M4b LINE L1 3328 4937 -2020 1565 164 13 56 chr9 102694621 102694925 -15167702 + AluJb SINE Alu 1 291 -21 1578 157 75 107 chr9 102694984 102695311 -15167316 + L1MB8 LINE L1 5716 6025 -153 2260 87 11 0 chr9 102695311 102695598 -15167029 - AluSx SINE Alu -22 290 1 1578 157 75 107 chr9 102695598 102695747 -15166880 + L1MB8 LINE L1 6025 6177 -1 1568 282 128 69 chr9 102695772 102696157 -15166470 - L2 LINE L2 -728 2586 2225 2021 141 7 0 chr9 102696157 102696461 -15166166 + AluSq SINE Alu 1 306 -7 1568 282 128 69 chr9 102696461 102696625 -15166002 - L2 LINE L2 -1089 2225 2072 2364 119 42 31 chr9 102696625 102696985 -15165642 - THE1B LTR MaLR 0 364 1 1568 282 128 69 chr9 102696985 102697437 -15165190 - L2 LINE L2 -1242 2072 1525 1985 110 57 7 chr9 102697661 102697942 -15164685 - AluSq SINE Alu -18 295 1 862 90 20 204 chr9 102697955 102698135 -15164492 - L1MA3 LINE L1 -2 6303 6178 1853 171 0 0 chr9 102698135 102698422 -15164205 - AluSx SINE Alu -10 302 16 862 90 20 204 chr9 102698422 102698486 -15164141 - L1MA3 LINE L1 -127 6178 6104 600 84 67 67 chr9 102698482 102698513 -15164114 - L1MA2 LINE L1 -135 6169 6139 * 2170 127 0 13 chr9 102698513 102698829 -15163798 - AluSx SINE Alu 0 312 1 600 84 67 67 chr9 102698829 102698916 -15163711 - L1MA2 LINE L1 -164 6140 6051 2304 146 15 0 chr9 102698951 102699293 -15163334 + MER7A DNA MER2_type 2 346 0 816 189 0 0 chr9 102699657 102699779 -15162848 - FLAM_C SINE Alu -20 123 2 1512 181 6 60 chr9 102699814 102700128 -15162499 - AluSx SINE Alu -15 297 1 986 216 12 0 chr9 102700202 102700369 -15162258 + FAM SINE Alu 1 169 -6 1480 84 31 40 chr9 102700371 102700596 -15162031 - L1PA16 LINE L1 -5 6161 5939 1649 269 66 33 chr9 102700704 102701885 -15160742 + L1MEd LINE L1 2 1256 -4863 828 110 0 24 chr9 102702072 102702199 -15160428 + FLAM_C SINE Alu 12 135 -8 396 235 59 55 chr9 102702353 102702557 -15160070 - MLT1H LTR MaLR -302 288 72 293 225 0 62 chr9 102702638 102702718 -15159909 - L2 LINE L2 -188 3084 3010 866 117 7 66 chr9 102702768 102702905 -15159722 + FLAM_C SINE Alu 1 129 -4 2341 69 14 0 chr9 102703156 102703447 -15159180 - AluY SINE Alu -16 295 1 2406 79 13 0 chr9 102703643 102703948 -15158679 + AluSx SINE Alu 2 310 -2 234 0 0 0 chr9 102704330 102704356 -15158271 + (T)n Simple_repeat Simple_repeat 1 26 0 848 143 0 61 chr9 102704423 102704570 -15158057 + FLAM_C SINE Alu 2 139 -4 269 222 25 37 chr9 102705633 102705714 -15156913 + MIR SINE MIR 173 252 -10 * 435 312 71 7 chr9 102705712 102705866 -15156761 - MIR SINE MIR -71 191 28 387 240 77 19 chr9 102705872 102705976 -15156651 + MER91C DNA MER1_type 4 113 -27 299 336 122 53 chr9 102706547 102707338 -15155289 - L2 LINE L2 -3 3269 2364 2011 110 17 23 chr9 102707338 102707638 -15154989 + AluSx SINE Alu 1 298 -14 299 336 122 53 chr9 102707638 102707721 -15154906 - L2 LINE L2 -908 2364 2288 2247 191 28 11 chr9 102707935 102708401 -15154226 - L1ME1 LINE L1 -5 6161 5688 895 186 0 6 chr9 102708401 102708557 -15154070 + FRAM SINE Alu 1 154 -22 2228 184 113 37 chr9 102708559 102708789 -15153838 - L1ME1 LINE L1 -473 5693 5482 399 41 0 0 chr9 102708789 102708838 -15153789 + (TTTTA)n Simple_repeat Simple_repeat 1 49 0 1540 196 22 0 chr9 102708839 102709110 -15153517 - AluJb SINE Alu -33 279 3 2228 184 113 37 chr9 102709110 102709775 -15152852 - L1ME1 LINE L1 -683 5483 4749 274 287 77 72 chr9 102709805 102709929 -15152698 - MLT1L LTR MaLR -1 614 492 1211 196 0 18 chr9 102709929 102710154 -15152473 + MER58A DNA MER1_type 4 224 0 274 287 77 72 chr9 102710154 102710215 -15152412 - MLT1L LTR MaLR -123 492 433 555 157 139 0 chr9 102710215 102710323 -15152304 - FLAM_A SINE Alu -10 123 1 274 287 77 72 chr9 102710323 102710556 -15152071 - MLT1L LTR MaLR -182 433 111 315 343 114 7 chr9 102710690 102710830 -15151797 - MER5A DNA MER1_type 0 189 35 275 200 0 50 chr9 102710890 102710939 -15151688 + MER5B DNA MER1_type 1 51 -127 255 31 0 0 chr9 102710939 102710971 -15151656 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1767 146 49 4 chr9 102710972 102711239 -15151388 - AluSx SINE Alu -32 280 2 829 237 28 0 chr9 102711409 102711586 -15151041 + MER5A DNA MER1_type 4 185 -4 2244 124 0 0 chr9 102711681 102711980 -15150647 + AluSx SINE Alu 1 299 -13 678 168 7 36 chr9 102712670 102712797 -15149830 + FLAM_A SINE Alu 1 125 -177 1949 134 7 0 chr9 102712797 102713081 -15149546 - AluJb SINE Alu -25 287 2 2288 77 7 7 chr9 102715247 102715547 -15147080 + AluSc SINE Alu 1 300 -9 1266 183 13 0 chr9 102715698 102715927 -15146700 - MER46A DNA MER2_type -4 232 1 23 0 0 0 chr9 102716697 102716720 -15145907 + AT_rich Low_complexity Low_complexity 1 23 0 1863 169 0 29 chr9 102716760 102717074 -15145553 + AluJb SINE Alu 1 305 -7 332 249 74 126 chr9 102717268 102717593 -15145034 - L1ME4a LINE L1 -79 6042 5735 592 250 71 0 chr9 102717669 102717853 -15144774 - L1ME4a LINE L1 -425 5696 5500 218 316 25 13 chr9 102718272 102718351 -15144276 + L2 LINE L2 3234 3313 0 2214 92 24 3 chr9 102718582 102718875 -15143752 + AluSp SINE Alu 3 301 -12 2464 75 3 0 chr9 102720403 102720711 -15141916 + AluSp SINE Alu 2 310 -3 360 0 0 0 chr9 102720711 102720751 -15141876 + (TA)n Simple_repeat Simple_repeat 2 41 0 21 0 0 0 chr9 102720962 102720983 -15141644 + AT_rich Low_complexity Low_complexity 1 21 0 398 311 117 6 chr9 102720994 102721174 -15141453 + MIR3 SINE MIR 7 206 -2 1448 217 20 14 chr9 102721520 102721815 -15140812 - AluJb SINE Alu -4 298 2 1925 162 0 7 chr9 102721950 102722253 -15140374 - AluSx SINE Alu -11 301 1 200 205 84 6 chr9 102722579 102722745 -15139882 + (TA)n Simple_repeat Simple_repeat 2 180 0 35 0 0 22 chr9 102723170 102723198 -15139429 + AT_rich Low_complexity Low_complexity 1 29 -16 2179 104 0 3 chr9 102723198 102723486 -15139141 - AluSq SINE Alu -26 287 1 35 0 0 22 chr9 102723486 102723503 -15139124 + AT_rich Low_complexity Low_complexity 29 45 0 2247 112 0 0 chr9 102723582 102723878 -15138749 - AluSx SINE Alu -16 296 1 1834 158 3 10 chr9 102724757 102725049 -15137578 + AluJo SINE Alu 9 298 -14 2117 138 0 0 chr9 102725481 102725778 -15136849 - AluSx SINE Alu -10 302 6 238 234 0 31 chr9 102727446 102727510 -15135117 + CT-rich Low_complexity Low_complexity 4 65 0 1660 158 23 0 chr9 102727986 102728267 -15134360 - AluSx SINE Alu 0 312 42 1027 234 74 61 chr9 102728762 102729096 -15133531 - L1ME LINE L1 -4524 1737 1409 2016 110 3 36 chr9 102729096 102729405 -15133222 - AluSx SINE Alu -13 299 1 1027 234 74 61 chr9 102729405 102730270 -15132357 - L1ME LINE L1 -4852 1409 456 281 254 167 10 chr9 102730276 102730473 -15132154 + L2 LINE L2 1721 2047 -1267 203 37 0 0 chr9 102730475 102730502 -15132125 + L2 LINE L2 2326 2352 -962 482 329 128 9 chr9 102730522 102730590 -15132037 + L2 LINE L2 2544 2603 -711 690 187 0 43 chr9 102730590 102730729 -15131898 - FLAM_C SINE Alu 0 133 1 482 329 128 9 chr9 102730729 102730879 -15131748 + L2 LINE L2 2603 2788 -526 1084 121 18 6 chr9 102730896 102731062 -15131565 - AluSg SINE Alu -142 168 1 276 246 128 50 chr9 102731069 102731248 -15131379 + L2 LINE L2 3113 3305 -8 631 267 104 9 chr9 102731537 102731758 -15130869 + MIR SINE MIR 21 262 0 2131 85 15 0 chr9 102731955 102732227 -15130400 + AluSp SINE Alu 21 296 -17 38 0 0 0 chr9 102732256 102732294 -15130333 + AT_rich Low_complexity Low_complexity 1 38 0 44 0 0 0 chr9 102732528 102732572 -15130055 + AT_rich Low_complexity Low_complexity 1 44 0 265 296 74 12 chr9 102733142 102733223 -15129404 - MIR SINE MIR -76 186 101 293 330 41 10 chr9 102733848 102733945 -15128682 - MIR SINE MIR -67 141 42 447 303 17 50 chr9 102734031 102734211 -15128416 - L1MC4 LINE L1 -620 7422 7250 1689 161 56 0 chr9 102734211 102734497 -15128130 - AluJb SINE Alu -10 302 1 447 303 17 50 chr9 102734497 102734554 -15128073 - L1MC4 LINE L1 -792 7250 7193 2421 97 3 0 chr9 102734689 102735000 -15127627 + AluSp SINE Alu 1 312 -1 1843 258 115 50 chr9 102735126 102736513 -15126114 - L1MC4a LINE L1 -787 5359 4063 2074 139 0 7 chr9 102736513 102736822 -15125805 - AluSx SINE Alu -4 308 2 1843 258 115 50 chr9 102736822 102737000 -15125627 - L1MC4a LINE L1 -2083 4063 3898 1877 142 42 3 chr9 102737000 102737289 -15125338 - AluSx SINE Alu -12 300 1 1654 146 0 111 chr9 102737289 102737630 -15124997 - AluJb SINE Alu -8 304 1 1843 258 115 50 chr9 102737630 102737741 -15124886 - L1MC4a LINE L1 -1566 4580 4478 70 88 0 0 chr9 102737749 102737931 -15124696 + AT_rich Low_complexity Low_complexity 1 182 0 284 220 83 9 chr9 102737931 102738040 -15124587 - L1MC5 LINE L1 -2 7993 7833 2074 95 49 3 chr9 102738192 102738477 -15124150 + AluSg SINE Alu 1 298 -12 1102 166 78 101 chr9 102738572 102738969 -15123658 - LTR37B LTR ERV1 0 468 81 1137 201 48 0 chr9 102738973 102739182 -15123445 + MER58A DNA MER1_type 6 224 0 21 0 0 0 chr9 102740840 102740861 -15121766 + AT_rich Low_complexity Low_complexity 1 21 0 551 261 31 31 chr9 102741520 102741590 -15121037 - MIR SINE MIR -73 189 120 1956 132 10 3 chr9 102741590 102741901 -15120726 + AluSq SINE Alu 1 313 0 551 261 31 31 chr9 102741901 102741991 -15120636 - MIR SINE MIR -141 121 29 21 0 0 0 chr9 102742457 102742478 -15120149 + AT_rich Low_complexity Low_complexity 1 21 0 416 252 37 19 chr9 102742567 102742674 -15119953 + L2 LINE L2 3189 3297 -16 2155 107 3 7 chr9 102743249 102743547 -15119080 - AluSx SINE Alu -15 297 1 308 317 28 13 chr9 102743822 102744018 -15118609 + L1ME LINE L1 5478 5672 -449 304 260 53 13 chr9 102744268 102744418 -15118209 - L1ME4a LINE L1 -4 6117 5962 557 51 0 51 chr9 102744495 102744573 -15118054 - THE1C LTR MaLR 0 364 291 537 95 0 0 chr9 102744573 102744657 -15117970 - AluSg/x SINE Alu -9 300 217 2189 73 27 37 chr9 102744657 102744985 -15117642 - THE1C LTR MaLR -50 325 1 299 210 0 60 chr9 102745015 102745115 -15117512 - L1ME4a LINE L1 -321 5800 5707 2056 143 0 3 chr9 102746143 102746443 -15116184 + AluJb SINE Alu 5 303 -9 435 318 15 15 chr9 102747469 102747601 -15115026 + MIR SINE MIR 28 159 -103 282 286 265 26 chr9 102747672 102747861 -15114766 - MIR SINE MIR -26 236 3 1906 54 8 4 chr9 102747909 102748148 -15114479 - AluY SINE Alu -11 300 61 954 263 14 19 chr9 102748290 102748503 -15114124 - MER58A DNA MER1_type -4 220 9 314 294 50 17 chr9 102748888 102749007 -15113620 + MIR SINE MIR 88 210 -52 190 276 79 13 chr9 102749043 102749119 -15113508 - MIR SINE MIR -112 150 70 1510 173 58 4 chr9 102749247 102749525 -15113102 - AluJo SINE Alu -19 293 1 1866 117 36 4 chr9 102749597 102749898 -15112729 - AluSx SINE Alu 0 310 1 180 0 0 0 chr9 102749953 102749973 -15112654 + (T)n Simple_repeat Simple_repeat 1 20 0 22 0 0 0 chr9 102751202 102751224 -15111403 + AT_rich Low_complexity Low_complexity 1 22 0 1744 162 41 3 chr9 102751245 102751535 -15111092 - AluSx SINE Alu -11 301 1 187 360 12 23 chr9 102751796 102751882 -15110745 - L2 LINE L2 -173 3099 3015 2221 93 0 17 chr9 102752318 102752619 -15110008 - AluSg SINE Alu -14 296 1 26 30 0 0 chr9 102752623 102752656 -15109971 + AT_rich Low_complexity Low_complexity 1 33 0 1067 207 76 88 chr9 102752913 102753099 -15109528 - L1ME3 LINE L1 -47 6115 5928 2075 119 0 7 chr9 102753099 102753393 -15109234 - AluSx SINE Alu -16 296 5 1067 207 76 88 chr9 102753393 102753662 -15108965 - L1ME3 LINE L1 -234 5928 5668 260 209 52 157 chr9 102754209 102754352 -15108275 - L1ME3 LINE L1 -605 5565 5441 2269 97 0 13 chr9 102754352 102754652 -15107975 - AluSg SINE Alu -14 296 1 260 209 52 157 chr9 102754652 102754680 -15107947 - L1ME3 LINE L1 -729 5441 5412 26 30 0 0 chr9 102754808 102754841 -15107786 + AT_rich Low_complexity Low_complexity 1 33 0 531 284 80 71 chr9 102754886 102755956 -15106671 - L1M4 LINE L1 -1042 5104 4008 1999 120 0 0 chr9 102755956 102756231 -15106396 + AluSx SINE Alu 1 275 -37 531 284 80 71 chr9 102756231 102756438 -15106189 - L1M4 LINE L1 -2138 4008 3804 2299 86 3 25 chr9 102757014 102757328 -15105299 - AluSc SINE Alu -2 307 1 197 310 28 42 chr9 102757537 102757608 -15105019 + MIR3 SINE MIR 6 75 -133 287 148 66 0 chr9 102757994 102758055 -15104572 + MER116 DNA Mariner 16 80 0 390 367 47 18 chr9 102758155 102758324 -15104303 - L2 LINE L2 -1 3271 3098 183 341 116 29 chr9 102758511 102758649 -15103978 - L2 LINE L2 -458 2856 2707 511 292 177 0 chr9 102758653 102758862 -15103765 + MIR SINE MIR 2 247 -15 21 0 0 0 chr9 102758863 102758884 -15103743 + AT_rich Low_complexity Low_complexity 1 21 0 430 315 108 32 chr9 102758888 102759139 -15103488 - L2 LINE L2 -594 2720 2451 234 114 0 23 chr9 102759982 102760026 -15102601 - MER116 DNA Mariner 0 80 38 248 191 114 57 chr9 102760273 102760378 -15102249 - L1ME4a LINE L1 -39 6082 5972 1087 127 53 57 chr9 102760463 102760691 -15101936 - L1MA5A LINE L1 -4 6293 6067 236 218 117 0 chr9 102761050 102761145 -15101482 - MIR SINE MIR -46 162 57 413 215 116 8 chr9 102762116 102762237 -15100390 - MIR SINE MIR -29 233 100 233 341 12 0 chr9 102763463 102763545 -15099082 + CT-rich Low_complexity Low_complexity 1 83 0 396 0 0 0 chr9 102765554 102765598 -15097029 + (TG)n Simple_repeat Simple_repeat 2 45 0 41 21 0 0 chr9 102768639 102768687 -15093940 + AT_rich Low_complexity Low_complexity 1 48 0 260 288 61 55 chr9 102768840 102769003 -15093624 + MIR SINE MIR 78 241 -21 352 306 7 62 chr9 102769205 102769349 -15093278 + L2 LINE L2 3137 3272 0 21 0 0 0 chr9 102769476 102769497 -15093130 + AT_rich Low_complexity Low_complexity 1 21 0 314 265 44 0 chr9 102770774 102770842 -15091785 - MIR3 SINE MIR -24 184 114 506 250 178 10 chr9 102771017 102771225 -15091402 - MIR SINE MIR 0 262 20 619 263 65 5 chr9 102771234 102771420 -15091207 - MIR SINE MIR -56 206 10 3774 253 115 61 chr9 102771446 102773810 -15088817 + HAL1 LINE L1 1 2490 -17 2492 62 0 10 chr9 102773810 102774117 -15088510 - AluY SINE Alu -7 304 1 321 118 0 0 chr9 102774543 102774594 -15088033 + (TG)n Simple_repeat Simple_repeat 1 51 0 396 277 68 34 chr9 102775701 102775849 -15086778 + MIR SINE MIR 110 262 0 226 208 42 0 chr9 102776006 102776078 -15086549 - L1ME LINE L1 -5955 115 41 981 254 73 4 chr9 102776356 102776588 -15086039 + MIR SINE MIR 9 256 -6 364 270 161 15 chr9 102776773 102776910 -15085717 - MIR3 SINE MIR -5 203 47 2438 84 3 3 chr9 102777840 102778149 -15084478 - AluSq SINE Alu 0 313 5 207 0 0 0 chr9 102779205 102779228 -15083399 + (TTG)n Simple_repeat Simple_repeat 2 24 0 594 267 63 39 chr9 102779739 102779945 -15082682 - MIR SINE MIR -31 231 21 2451 90 3 0 chr9 102781131 102781463 -15081164 - AluSp SINE Alu 0 333 1 2064 103 0 47 chr9 102781659 102782021 -15080606 - AluY SINE Alu 0 348 1 21 36 0 0 chr9 102782032 102782060 -15080567 + AT_rich Low_complexity Low_complexity 1 28 0 424 261 196 0 chr9 102782114 102782252 -15080375 + MIR SINE MIR 16 180 -82 534 226 40 16 chr9 102782383 102782507 -15080120 - L2 LINE L2 0 3313 3187 2161 119 0 31 chr9 102782564 102782883 -15079744 + AluSx SINE Alu 1 309 -3 211 270 79 0 chr9 102784267 102784330 -15078297 + MIR SINE MIR 83 150 -58 2573 156 129 88 chr9 102784350 102784929 -15077698 - L1MC3 LINE L1 -8 7777 7097 259 215 0 15 chr9 102784929 102784994 -15077633 - MLT1F1 LTR MaLR -459 108 45 2573 156 129 88 chr9 102784994 102785112 -15077515 - L1MC3 LINE L1 -688 7097 6985 939 177 25 13 chr9 102785131 102785289 -15077338 - AluJb SINE Alu -35 277 118 818 169 0 0 chr9 102785324 102785448 -15077179 - AluJb SINE Alu -188 124 1 2394 92 0 3 chr9 102785453 102785767 -15076860 - AluSq SINE Alu 0 313 1 1511 137 81 75 chr9 102785767 102786125 -15076502 - L1MC3 LINE L1 -790 6995 6636 227 139 0 0 chr9 102786316 102786352 -15076275 + L1ME LINE L1 5547 5582 -539 7344 63 11 9 chr9 102786398 102788011 -15074616 - SVA Other Other -723 1384 2 1948 169 27 30 chr9 102789140 102789196 -15073431 + MLT1A1 LTR MaLR 1 56 -309 2400 63 0 25 chr9 102789196 102789515 -15073112 + AluY SINE Alu 1 311 0 1948 169 27 30 chr9 102789515 102789824 -15072803 + MLT1A1 LTR MaLR 56 365 0 306 258 63 31 chr9 102790056 102790074 -15072553 - L1MA10 LINE L1 -9 6325 6308 692 213 64 16 chr9 102790074 102790262 -15072365 - L1ME2 LINE L1 -15 6149 5953 1094 192 241 7 chr9 102790263 102790630 -15071997 - L1ME2 LINE L1 -282 5882 5422 1790 171 13 3 chr9 102791032 102791337 -15071290 - AluJb SINE Alu -3 309 2 756 195 82 0 chr9 102791340 102791499 -15071128 + MER58A DNA MER1_type 44 215 -9 234 0 0 0 chr9 102791605 102791631 -15070996 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 2046 107 11 0 chr9 102791912 102792184 -15070443 + AluSp SINE Alu 1 275 -38 1925 137 7 10 chr9 102792719 102793012 -15069615 - AluSx SINE Alu -20 292 1 1543 205 89 19 chr9 102793245 102793821 -15068806 - L1ME LINE L1 -421 5743 5134 251 202 11 0 chr9 102793950 102794044 -15068583 + CT-rich Low_complexity Low_complexity 1 95 0 244 259 118 76 chr9 102796411 102796673 -15065954 + L2 LINE L2 1989 2261 -1053 358 265 103 59 chr9 102796761 102796965 -15065662 - L1MC5 LINE L1 -44 7917 7705 448 321 38 0 chr9 102797540 102797671 -15064956 + L2 LINE L2 3136 3271 -1 2237 128 3 0 chr9 102797991 102798297 -15064330 + AluSx SINE Alu 1 307 -5 194 350 200 10 chr9 102799270 102799370 -15063257 - L2 LINE L2 -25 3247 3129 935 113 0 15 chr9 102799381 102799514 -15063113 + FLAM_C SINE Alu 1 131 -2 1812 166 0 10 chr9 102799523 102799824 -15062803 + AluJo SINE Alu 1 298 -14 219 276 86 17 chr9 102799882 102799998 -15062629 - L2 LINE L2 -213 3059 2936 645 264 95 35 chr9 102800942 102801373 -15061254 - L1MC4 LINE L1 -141 7901 7445 245 256 163 12 chr9 102801373 102801459 -15061168 - L2 LINE L2 -11 3261 3163 219 284 52 58 chr9 102801720 102801875 -15060752 - L2 LINE L2 -291 2981 2828 1275 117 98 0 chr9 102801967 102802181 -15060446 - MER46A DNA MER2_type -1 235 1 251 200 73 45 chr9 102804571 102804681 -15057946 - MLT1J LTR MaLR 0 511 399 632 226 153 32 chr9 102804731 102804979 -15057648 - MLT1J LTR MaLR -231 280 3 36 53 0 0 chr9 102805020 102805077 -15057550 + AT_rich Low_complexity Low_complexity 1 57 0 310 294 9 0 chr9 102805445 102805554 -15057073 - L1ME LINE L1 -302 5819 5710 221 301 154 35 chr9 102805555 102805698 -15056929 - MIR SINE MIR -12 250 91 41 78 0 0 chr9 102806749 102806839 -15055788 + AT_rich Low_complexity Low_complexity 1 90 0 256 278 102 34 chr9 102806929 102807076 -15055551 - MIR SINE MIR -76 132 25 1884 144 65 7 chr9 102807085 102807377 -15055250 - AluJb SINE Alu -3 309 1 612 0 0 0 chr9 102807536 102807604 -15055023 + (TATTG)n Simple_repeat Simple_repeat 2 69 0 622 110 0 22 chr9 102807619 102807710 -15054917 - AluJb SINE Alu -23 289 201 296 339 128 25 chr9 102807752 102808112 -15054515 + L1MEd LINE L1 4 400 -5719 227 268 24 24 chr9 102808305 102808387 -15054240 + MIR SINE MIR 176 257 -5 500 237 194 4 chr9 102808575 102808807 -15053820 + L2 LINE L2 2365 2640 -674 2175 129 6 3 chr9 102809080 102809443 -15053184 - AluSx SINE Alu 0 364 1 386 289 178 16 chr9 102809528 102809889 -15052738 + L2 LINE L2 2830 3313 0 497 103 15 0 chr9 102810767 102810835 -15051792 + Tigger2 DNA MER2_type 1 69 -2649 * 2543 144 48 11 chr9 102810819 102811255 -15051372 + Tigger2 DNA MER2_type 2267 2718 0 1717 157 3 21 chr9 102811356 102811642 -15050985 - AluJb SINE Alu -26 286 6 217 191 56 101 chr9 102811757 102811846 -15050781 - MIR SINE MIR -102 106 22 262 296 61 0 chr9 102812827 102812925 -15049702 + L2 LINE L2 3164 3267 -46 357 308 112 12 chr9 102812940 102813109 -15049518 - MIR SINE MIR -76 186 1 185 282 59 24 chr9 102813595 102813680 -15048947 + MIR SINE MIR 15 102 -160 646 243 53 49 chr9 102814610 102814853 -15047774 - MIR SINE MIR 0 262 19 243 314 48 19 chr9 102815833 102815938 -15046689 - L2 LINE L2 -1 3312 3205 231 222 0 37 chr9 102816595 102816649 -15045978 + GA-rich Low_complexity Low_complexity 4 55 0 288 204 159 0 chr9 102816861 102816949 -15045678 - L1ME4a LINE L1 -2 6119 6018 243 299 15 0 chr9 102817782 102817849 -15044778 + MIR3 SINE MIR 109 176 -32 1726 164 7 29 chr9 102817945 102818255 -15044372 - AluJo SINE Alu -9 303 1 1213 150 39 10 chr9 102818397 102818604 -15044023 + AluJo SINE Alu 85 297 -15 621 241 114 34 chr9 102819128 102819365 -15043262 + MIR SINE MIR 7 262 0 987 203 92 14 chr9 102820879 102821086 -15041541 - MER58A DNA MER1_type 0 224 2 789 226 77 25 chr9 102822569 102822804 -15039823 - MIR SINE MIR -1 261 15 2510 283 154 10 chr9 102823478 102824961 -15037666 - L1 LINE L1 -1253 4893 3197 1176 151 126 0 chr9 102824961 102825160 -15037467 + AluJb SINE Alu 87 310 -2 1600 233 125 37 chr9 102825162 102825327 -15037300 - L1 LINE L1 -2943 3203 3054 1787 181 3 20 chr9 102825327 102825631 -15036996 + AluJo SINE Alu 1 299 -13 1600 233 125 37 chr9 102825631 102826143 -15036484 - L1 LINE L1 -3092 3054 2466 322 109 0 0 chr9 102826175 102826221 -15036406 + L1M4 LINE L1 2373 2418 -3728 449 166 25 123 chr9 102826231 102826394 -15036233 + L1M4 LINE L1 2272 2418 -3728 2166 116 0 10 chr9 102826477 102826778 -15035849 - AluSg SINE Alu -12 298 1 317 291 66 18 chr9 102827259 102827462 -15035165 - MIR SINE MIR 0 262 3 246 263 88 26 chr9 102827513 102827627 -15035000 + MIR3 SINE MIR 85 205 -3 371 273 200 0 chr9 102828807 102828972 -15033655 + MIR SINE MIR 47 244 -18 691 135 48 16 chr9 102829900 102830026 -15032601 - FLAM_A SINE Alu -2 131 2 369 0 0 0 chr9 102830292 102830333 -15032294 + (TG)n Simple_repeat Simple_repeat 2 42 0 2015 111 7 0 chr9 102830333 102830613 -15032014 - AluSg SINE Alu -28 282 1 736 269 128 29 chr9 102830639 102830799 -15031828 - L1ME4a LINE L1 -1 6120 5977 570 184 92 12 chr9 102830799 102830962 -15031665 + MER104 DNA MER2_type 5 180 0 736 269 128 29 chr9 102830962 102831325 -15031302 - L1ME4a LINE L1 -144 5977 5545 487 309 56 0 chr9 102831920 102832098 -15030529 + MIR SINE MIR 53 240 -22 186 263 18 0 chr9 102832311 102832368 -15030259 - L2 LINE L2 -14 3258 3201 402 21 0 0 chr9 102833477 102833524 -15029103 + (TA)n Simple_repeat Simple_repeat 1 47 0 279 54 0 0 chr9 102833844 102833881 -15028746 + (TG)n Simple_repeat Simple_repeat 2 38 0 571 106 26 40 chr9 102835519 102835670 -15026957 + (TAGA)n Simple_repeat Simple_repeat 3 151 0 981 47 78 0 chr9 102836374 102836503 -15026124 + MER85 DNA T2_type 1 139 0 848 181 65 47 chr9 102836771 102836986 -15025641 - MER20 DNA MER1_type 0 219 1 180 0 0 0 chr9 102838700 102838720 -15023907 + (CAG)n Simple_repeat Simple_repeat 3 22 0 960 203 141 0 chr9 102843685 102843877 -15018750 + MER58A DNA MER1_type 1 219 -5 287 277 60 0 chr9 102846669 102846752 -15015875 + MIR SINE MIR 64 151 -57 342 268 0 0 chr9 102849602 102849684 -15012943 - MIR SINE MIR 0 262 181 183 139 0 0 chr9 102850361 102850397 -15012230 + (CGGGGG)n Simple_repeat Simple_repeat 6 41 0 216 200 0 0 chr9 102851488 102851533 -15011094 + T-rich Low_complexity Low_complexity 1 45 0 198 0 0 0 chr9 102851830 102851852 -15010775 + (CA)n Simple_repeat Simple_repeat 2 23 0 22 0 0 0 chr9 102852312 102852334 -15010293 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 102853403 102853424 -15009203 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 102854595 102854617 -15008010 + AT_rich Low_complexity Low_complexity 1 22 0 238 365 119 23 chr9 102858335 102858554 -15004073 + L2 LINE L2 3033 3272 0 1940 134 3 3 chr9 102858950 102859234 -15003393 + AluJo SINE Alu 1 284 -28 181 389 25 31 chr9 102859328 102859490 -15003137 + L2 LINE L2 2896 3056 -216 299 281 152 53 chr9 102859981 102860152 -15002475 + MIR SINE MIR 48 235 -27 819 224 25 0 chr9 102860843 102861039 -15001588 - L1MA4 LINE L1 -4 6296 6096 464 310 54 68 chr9 102861040 102861639 -15000988 + L2 LINE L2 2623 3193 -79 411 330 70 57 chr9 102862017 102862177 -15000450 + MIR SINE MIR 20 185 -77 207 0 0 0 chr9 102862177 102862200 -15000427 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 411 330 70 57 chr9 102862200 102862269 -15000358 + MIR SINE MIR 185 252 -10 204 234 84 93 chr9 102862932 102863039 -14999588 + MIR SINE MIR 79 184 -78 2298 92 3 13 chr9 102863412 102863717 -14998910 - AluSx SINE Alu -10 302 1 374 268 81 57 chr9 102864949 102865072 -14997555 + MIR SINE MIR 25 145 -63 241 235 12 82 chr9 102865338 102865423 -14997204 - L3 LINE CR1 -1091 486 408 234 105 0 0 chr9 102865680 102865718 -14996909 + (CATATA)n Simple_repeat Simple_repeat 2 39 0 229 218 55 0 chr9 102866922 102866977 -14995650 - L2 LINE L2 -81 3191 3134 2109 126 7 0 chr9 102867274 102867583 -14995044 - AluSx SINE Alu -1 311 1 327 237 39 51 chr9 102869239 102869395 -14993232 + L1ME4a LINE L1 5967 6120 -1 230 339 0 0 chr9 102869968 102870030 -14992597 + MIR3 SINE MIR 109 170 -38 2119 111 4 0 chr9 102870188 102870509 -14992118 + AluSx SINE Alu 1 322 0 25 31 0 0 chr9 102871298 102871330 -14991297 + AT_rich Low_complexity Low_complexity 1 32 0 1688 163 41 102 chr9 102871786 102871986 -14990641 + MER31B LTR ERV1 1 212 -331 2433 110 100 5 chr9 102871986 102872376 -14990251 + MSTA LTR MaLR 1 427 -1 1688 163 41 102 chr9 102872376 102872670 -14989957 + MER31B LTR ERV1 212 543 0 273 256 24 0 chr9 102873544 102873626 -14989001 + L1ME4a LINE L1 5602 5685 -436 2290 109 0 0 chr9 102873791 102874102 -14988525 + AluSx SINE Alu 1 311 -1 973 253 74 7 chr9 102874146 102874442 -14988185 - MER46C DNA MER2_type -1 337 22 236 260 27 14 chr9 102874452 102874525 -14988102 + L1ME4a LINE L1 5967 6040 -81 513 247 52 32 chr9 102875765 102875919 -14986708 + L2 LINE L2 3114 3270 -43 421 281 80 16 chr9 102876158 102876407 -14986220 + L1ME4a LINE L1 5655 5919 -202 25 75 0 0 chr9 102876611 102876664 -14985963 + AT_rich Low_complexity Low_complexity 1 53 0 1845 170 0 7 chr9 102877269 102877575 -14985052 + AluJb SINE Alu 1 304 -8 1682 169 98 0 chr9 102878005 102878331 -14984296 + MLT1A1 LTR MaLR 1 358 -7 238 169 52 65 chr9 102878342 102878419 -14984208 + L1ME4a LINE L1 5952 6027 -94 21 0 0 0 chr9 102879562 102879583 -14983044 + AT_rich Low_complexity Low_complexity 1 21 0 385 262 29 10 chr9 102879584 102879687 -14982940 - MIR SINE MIR -22 240 136 639 307 235 20 chr9 102879717 102880108 -14982519 - L2 LINE L2 -11 3302 2828 941 193 0 6 chr9 102880296 102880467 -14982160 + FAM SINE Alu 1 170 -5 378 403 63 0 chr9 102880796 102881034 -14981593 + L1MEd LINE L1 561 813 -5306 2151 257 99 14 chr9 102881098 102882196 -14980431 + L1M4 LINE L1 2476 3667 -2479 21 0 0 0 chr9 102882262 102882283 -14980344 + AT_rich Low_complexity Low_complexity 1 21 0 2078 203 32 8 chr9 102882295 102882895 -14979732 + L1MD2 LINE L1 5686 6346 -13 2111 259 63 19 chr9 102882927 102883067 -14979560 - L2 LINE L2 -628 2686 2554 2317 94 7 0 chr9 102883067 102883364 -14979263 - AluSx SINE Alu -13 299 1 2111 259 63 19 chr9 102883364 102883871 -14978756 - L2 LINE L2 -760 2554 2010 465 196 0 51 chr9 102883871 102883986 -14978641 + L1ME3A LINE L1 5461 5568 -596 618 252 79 101 chr9 102884010 102884506 -14978121 + L1ME3A LINE L1 5677 6161 -9 2671 286 109 24 chr9 102884514 102885795 -14976832 - L2 LINE L2 -1319 1995 606 314 317 79 0 chr9 102885804 102885905 -14976722 - MIR SINE MIR -137 125 17 514 183 38 8 chr9 102886305 102886436 -14976191 - Charlie1 DNA MER1_type 0 2761 2627 * 675 181 60 88 chr9 102886430 102886646 -14975981 - Charlie1 DNA MER1_type -2526 235 26 324 294 37 18 chr9 102886937 102887046 -14975581 - MIR3 SINE MIR -93 115 5 2464 110 33 6 chr9 102887388 102887753 -14974874 - THE1C LTR MaLR 0 375 1 22 35 0 0 chr9 102891544 102891573 -14971054 + AT_rich Low_complexity Low_complexity 1 29 0 1828 163 24 0 chr9 102892098 102892392 -14970235 - AluJb SINE Alu -11 301 1 2219 108 3 3 chr9 102893915 102894221 -14968406 - AluSx SINE Alu -6 306 1 2396 81 0 0 chr9 102894877 102895174 -14967453 + AluSc SINE Alu 3 299 -10 231 227 216 41 chr9 102895675 102895772 -14966855 + MIR SINE MIR 124 237 -25 370 275 228 12 chr9 102896184 102896351 -14966276 - MIR SINE MIR -7 255 53 1765 133 40 4 chr9 102896354 102896664 -14965963 + AluSx SINE Alu 1 312 0 2107 123 7 7 chr9 102899035 102899336 -14963291 - AluSx SINE Alu -11 301 1 249 108 0 0 chr9 102899731 102899768 -14962859 + (TA)n Simple_repeat Simple_repeat 2 38 0 26 50 0 0 chr9 102900651 102900691 -14961936 + AT_rich Low_complexity Low_complexity 1 40 0 342 324 155 28 chr9 102901552 102901842 -14960785 - L3 LINE CR1 -187 1390 1064 1809 183 0 7 chr9 102904021 102904321 -14958306 + AluJb SINE Alu 1 298 -14 244 214 71 0 chr9 102904442 102904512 -14958115 + MIR3 SINE MIR 120 194 -14 237 336 55 18 chr9 102904961 102905071 -14957556 - MIR SINE MIR -56 152 39 194 188 83 21 chr9 102905348 102905396 -14957231 + L2 LINE L2 3262 3312 -1 198 303 114 48 chr9 102905489 102905717 -14956910 + L2 LINE L2 2456 2698 -616 671 213 124 40 chr9 102905820 102906022 -14956605 + MIR SINE MIR 44 262 0 233 347 0 31 chr9 102906235 102906333 -14956294 + MIR SINE MIR 8 102 -160 180 280 0 20 chr9 102906468 102906518 -14956109 + MIR SINE MIR 214 262 0 1673 174 19 29 chr9 102907152 102907462 -14955165 + AluJo SINE Alu 1 307 -5 337 129 29 0 chr9 102907612 102907682 -14954945 + L1MB4 LINE L1 6109 6180 0 205 302 116 12 chr9 102908352 102908438 -14954189 - L2 LINE L2 -1 3271 3177 1528 121 128 8 chr9 102909361 102909634 -14952993 + AluSg1 SINE Alu 1 303 0 1654 166 4 11 chr9 102909838 102910116 -14952511 + AluJo SINE Alu 1 276 -36 2383 92 3 13 chr9 102911382 102911698 -14950929 + AluSp SINE Alu 1 313 0 2190 109 13 19 chr9 102911794 102912106 -14950521 + AluSx SINE Alu 3 312 0 1882 148 0 19 chr9 102912584 102912902 -14949725 + AluJo SINE Alu 1 312 0 2163 107 10 7 chr9 102913014 102913312 -14949315 + AluSx SINE Alu 1 299 -13 770 176 0 0 chr9 102915143 102915268 -14947359 + FLAM_C SINE Alu 1 125 -18 1553 74 0 74 chr9 102915667 102915910 -14946717 + AluY SINE Alu 77 301 -10 1821 140 0 24 chr9 102915919 102916212 -14946415 + AluJb SINE Alu 1 286 -26 24 0 0 0 chr9 102916678 102916702 -14945925 + AT_rich Low_complexity Low_complexity 1 24 0 246 235 26 148 chr9 102916740 102916855 -14945772 + MIR SINE MIR 53 153 -109 470 303 128 5 chr9 102916867 102917062 -14945565 - MIR SINE MIR -2 260 42 21 0 0 0 chr9 102917122 102917143 -14945484 + AT_rich Low_complexity Low_complexity 1 21 0 242 296 174 23 chr9 102917192 102917324 -14945303 + MIR SINE MIR 99 250 -12 3519 115 28 63 chr9 102917520 102918170 -14944457 - L1MC2 LINE L1 -9 6335 5709 2264 93 0 7 chr9 102918216 102918516 -14944111 + AluY SINE Alu 1 298 -13 3709 27 0 5 chr9 102918891 102919332 -14943295 + L1PA4 LINE L1 5717 6155 0 3103 52 0 3 chr9 102919333 102919719 -14942908 + L1PA6 LINE L1 5770 6154 0 2270 124 0 0 chr9 102919856 102920162 -14942465 + AluSx SINE Alu 1 306 -6 1679 236 192 49 chr9 102920799 102921322 -14941305 - L2 LINE L2 0 3313 2866 1627 180 56 0 chr9 102921322 102921644 -14940983 - MER58B DNA MER1_type 0 341 2 1679 236 192 49 chr9 102921644 102922289 -14940338 - L2 LINE L2 -447 2866 1988 347 226 150 38 chr9 102922319 102922452 -14940175 + FRAM SINE Alu 1 148 -18 248 277 15 0 chr9 102923068 102923133 -14939494 + L2 LINE L2 3234 3299 -14 3639 246 78 88 chr9 102923341 102924982 -14937645 + L2 LINE L2 743 2366 -948 216 0 0 0 chr9 102924982 102925006 -14937621 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3639 246 78 88 chr9 102925006 102925194 -14937433 + L2 LINE L2 2366 2554 -760 6526 145 9 21 chr9 102925195 102927209 -14935418 + L1MA3 LINE L1 4125 6112 -193 1542 174 45 13 chr9 102927209 102927519 -14935108 - L1PB3 LINE L1 0 6154 5835 2274 109 3 0 chr9 102927523 102927834 -14934793 - AluSx SINE Alu 0 312 1 12830 204 40 42 chr9 102927835 102927999 -14934628 - L1PB3 LINE L1 -670 5484 5321 1883 144 20 10 chr9 102927999 102928298 -14934329 - AluSx SINE Alu -10 302 1 12830 204 40 42 chr9 102928298 102928814 -14933813 - L1PB3 LINE L1 -833 5321 4805 2150 86 32 0 chr9 102928814 102929094 -14933533 - AluSc SINE Alu -20 289 1 12830 204 40 42 chr9 102929094 102930421 -14932206 - L1PB3 LINE L1 -1349 4805 3477 2108 82 3 76 chr9 102930421 102930751 -14931876 - AluY SINE Alu -5 306 1 12830 204 40 42 chr9 102930751 102932521 -14930106 - L1PB3 LINE L1 -2677 3477 1705 1116 144 10 0 chr9 102932521 102932716 -14929911 + L1MA3 LINE L1 6102 6298 -7 32 26 0 0 chr9 102932720 102932759 -14929868 + AT_rich Low_complexity Low_complexity 1 39 0 1107 235 111 50 chr9 102932759 102932944 -14929683 + L2 LINE L2 2541 2713 -559 1799 176 27 0 chr9 102932944 102933239 -14929388 + AluJo SINE Alu 3 305 -7 1107 235 111 50 chr9 102933239 102933560 -14929067 + L2 LINE L2 2713 3123 -149 2192 100 0 0 chr9 102933560 102933885 -14928742 + AluSx SINE Alu 1 325 0 1107 235 111 50 chr9 102933885 102934005 -14928622 + L2 LINE L2 3123 3234 -38 275 351 0 0 chr9 102934139 102934213 -14928414 - MIR SINE MIR -92 116 43 2328 101 0 22 chr9 102934507 102934824 -14927803 + AluY SINE Alu 2 311 0 2270 97 3 7 chr9 102934852 102935150 -14927477 + AluSq SINE Alu 1 297 -16 332 354 50 33 chr9 102935885 102936066 -14926561 + MIR3 SINE MIR 23 206 -2 504 198 114 91 chr9 102936179 102936487 -14926140 + L1MC5 LINE L1 7603 7917 -44 2344 93 6 0 chr9 102936497 102936808 -14925819 - AluSp SINE Alu 0 313 1 324 259 62 79 chr9 102936945 102937193 -14925434 + L1MC/D LINE L1 5537 5778 -386 1182 49 6 24 chr9 102937455 102937619 -14925008 + L1PA7 LINE L1 5993 6153 -1 697 230 7 26 chr9 102938345 102938497 -14924130 - MER58B DNA MER1_type 0 341 193 385 326 115 20 chr9 102938740 102939044 -14923583 - L1MEc LINE L1 -6008 388 56 207 222 67 67 chr9 102939269 102939359 -14923268 + MIR SINE MIR 133 222 -40 24 32 0 0 chr9 102939643 102939674 -14922953 + AT_rich Low_complexity Low_complexity 1 31 0 351 256 133 0 chr9 102940094 102940274 -14922353 + L1ME3A LINE L1 5079 5282 -864 571 263 141 28 chr9 102940316 102940421 -14922206 + L1ME3A LINE L1 5294 5386 -783 2206 89 14 7 chr9 102940421 102940712 -14921915 + AluSg SINE Alu 1 293 -17 571 263 141 28 chr9 102940712 102941204 -14921423 + L1ME3A LINE L1 5386 5905 -264 342 0 0 0 chr9 102941389 102941427 -14921200 + (TA)n Simple_repeat Simple_repeat 2 39 0 21 0 0 0 chr9 102941638 102941659 -14920968 + AT_rich Low_complexity Low_complexity 1 21 0 400 311 117 6 chr9 102941670 102941850 -14920777 + MIR3 SINE MIR 7 206 -2 1426 220 20 14 chr9 102942196 102942491 -14920136 - AluJb SINE Alu -4 298 2 1925 162 0 7 chr9 102942626 102942929 -14919698 - AluSx SINE Alu -11 301 1 200 205 84 6 chr9 102943255 102943421 -14919206 + (TA)n Simple_repeat Simple_repeat 1 179 0 28 0 0 0 chr9 102943846 102943874 -14918753 + AT_rich Low_complexity Low_complexity 1 28 0 2152 115 0 3 chr9 102943874 102944162 -14918465 - AluSq SINE Alu -26 287 1 829 237 28 0 chr9 102944257 102944434 -14918193 - MER5A DNA MER1_type -4 185 4 1767 146 49 4 chr9 102944604 102944871 -14917756 + AluSx SINE Alu 2 280 -32 255 31 0 0 chr9 102944872 102944904 -14917723 + (CAA)n Simple_repeat Simple_repeat 2 33 0 275 200 0 50 chr9 102944904 102944953 -14917674 - MER5B DNA MER1_type -127 51 1 315 343 114 7 chr9 102945013 102945153 -14917474 + MER5A DNA MER1_type 35 189 0 274 287 77 72 chr9 102945287 102945520 -14917107 + MLT1L LTR MaLR 111 341 -274 555 157 139 0 chr9 102945520 102945628 -14916999 + FLAM_A SINE Alu 1 123 -10 274 287 77 72 chr9 102945628 102945689 -14916938 + MLT1L LTR MaLR 341 400 -215 1211 196 0 18 chr9 102945689 102945914 -14916713 - MER58A DNA MER1_type 0 224 4 274 287 77 72 chr9 102945914 102946038 -14916589 + MLT1L LTR MaLR 400 614 -1 2228 182 137 12 chr9 102946068 102946729 -14915898 + L1MB7 LINE L1 4749 5470 -743 607 213 0 0 chr9 102946733 102946841 -14915786 + FLAM_C SINE Alu 3 110 -33 3261 239 124 77 chr9 102946949 102947391 -14915236 - L2 LINE L2 -1047 2267 1847 3622 145 14 8 chr9 102947391 102948019 -14914608 + L1MB7 LINE L1 5538 6169 -15 3261 239 124 77 chr9 102948019 102948903 -14913724 - L2 LINE L2 -1467 1847 878 194 245 38 0 chr9 102949116 102949169 -14913458 + L2 LINE L2 3255 3309 -4 386 186 85 90 chr9 102949690 102949867 -14912760 + MER5B DNA MER1_type 1 176 -2 306 265 98 20 chr9 102950558 102950660 -14911967 - L2 LINE L2 -2 3311 3202 2038 116 34 0 chr9 102951128 102951421 -14911206 - AluSq SINE Alu -10 303 1 1870 144 34 10 chr9 102951576 102951874 -14910753 + AluJo SINE Alu 1 305 -7 213 157 59 0 chr9 102952255 102952306 -14910321 - L2 LINE L2 -204 3068 3015 21 36 0 0 chr9 102952403 102952431 -14910196 + AT_rich Low_complexity Low_complexity 1 28 0 3220 88 86 27 chr9 102952431 102952749 -14909878 - L1PB1 LINE L1 -2 6149 5787 351 0 0 0 chr9 102952749 102952788 -14909839 + (TG)n Simple_repeat Simple_repeat 2 40 0 3220 88 86 27 chr9 102952788 102952990 -14909637 - L1PB1 LINE L1 -364 5787 5598 2204 104 13 0 chr9 102952992 102953290 -14909337 - AluSx SINE Alu -10 302 1 477 309 51 0 chr9 102953291 102953469 -14909158 + MIR SINE MIR 40 226 -36 259 356 32 0 chr9 102953971 102954082 -14908545 + MIR SINE MIR 38 151 -57 1292 196 100 0 chr9 102955315 102955595 -14907032 + MLT1A1 LTR MaLR 51 358 -7 238 169 52 65 chr9 102955606 102955683 -14906944 + L1ME4a LINE L1 5952 6027 -94 21 0 0 0 chr9 102956826 102956847 -14905780 + AT_rich Low_complexity Low_complexity 1 21 0 385 262 29 10 chr9 102956848 102956951 -14905676 - MIR SINE MIR -22 240 136 639 307 235 20 chr9 102956981 102957372 -14905255 - L2 LINE L2 -11 3302 2828 941 193 0 6 chr9 102957560 102957731 -14904896 + FAM SINE Alu 1 170 -5 378 403 63 0 chr9 102958060 102958298 -14904329 + L1MEd LINE L1 972 1224 -5306 2151 257 99 14 chr9 102958362 102959460 -14903167 + L1M4 LINE L1 2476 3667 -2479 21 0 0 0 chr9 102959526 102959547 -14903080 + AT_rich Low_complexity Low_complexity 1 21 0 2078 203 32 8 chr9 102959559 102960159 -14902468 + L1MD2 LINE L1 5686 6346 -13 495 256 25 8 chr9 102960191 102960312 -14902315 - L2 LINE L2 -628 2686 2564 2522 54 0 0 chr9 102960331 102960629 -14901998 - AluY SINE Alu -13 298 1 554 292 125 0 chr9 102960811 102961003 -14901624 - MIR SINE MIR 0 262 47 328 324 141 18 chr9 102961617 102961787 -14900840 + MIR SINE MIR 2 192 -70 548 261 38 17 chr9 102961869 102962107 -14900520 + L1MEd LINE L1 1854 2096 -4444 1592 166 89 21 chr9 102962164 102962489 -14900138 - MER7A DNA MER2_type 0 346 2 368 309 55 9 chr9 102962784 102962894 -14899733 - MIR SINE MIR -128 134 20 505 232 80 8 chr9 102963299 102963424 -14899203 + MIR3 SINE MIR 65 198 -10 518 212 139 30 chr9 102963455 102963620 -14899007 - L1MC4 LINE L1 -27 8015 7833 2198 241 71 45 chr9 102963621 102964464 -14898163 - L1MC4 LINE L1 -478 7564 6700 478 307 32 28 chr9 102964483 102964766 -14897861 + L1MEd LINE L1 3667 3950 -2590 2004 222 121 22 chr9 102964783 102965000 -14897627 + L1MC2 LINE L1 5606 5800 -544 500 0 17 0 chr9 102965000 102965060 -14897567 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 2004 222 121 22 chr9 102965060 102965513 -14897114 + L1MC2 LINE L1 5800 6342 -2 229 248 101 62 chr9 102966482 102966611 -14896016 - L2 LINE L2 0 3313 3180 1475 239 151 29 chr9 102966697 102967279 -14895348 + L1ME3A LINE L1 5513 6165 -5 351 229 22 83 chr9 102967398 102967607 -14895020 + LTR67 LTR ERVL 1 289 -268 578 206 103 7 chr9 102967672 102967808 -14894819 + LTR67 LTR ERVL 408 556 -1 1002 213 56 9 chr9 102967840 102968149 -14894478 + L1ME1 LINE L1 5566 5908 -256 757 204 105 11 chr9 102968151 102968342 -14894285 + L1ME1 LINE L1 5955 6163 -3 519 202 67 8 chr9 102968595 102968714 -14893913 - L2 LINE L2 0 3313 3188 1046 206 130 7 chr9 102968764 102969113 -14893514 - MSTD LTR MaLR 0 396 1 1604 242 96 51 chr9 102969245 102969515 -14893112 - L2 LINE L2 -318 2995 2739 2244 108 23 0 chr9 102969515 102969820 -14892807 - AluSx SINE Alu 0 312 1 1604 242 96 51 chr9 102969820 102970129 -14892498 - L2 LINE L2 -574 2739 2398 2515 243 30 29 chr9 103070704 103071399 -14791228 - L1ME1 LINE L1 -5 6161 5466 6957 201 119 25 chr9 103071407 103073928 -14788699 - L1ME1 LINE L1 -5 6230 3403 3143 159 53 39 chr9 103073921 103074032 -14788595 - L1MD3 LINE L1 0 7995 7887 * 1446 92 10 5 chr9 103074032 103074228 -14788399 + MER107 DNA MER1_type 1 197 0 3143 159 53 39 chr9 103074228 103074487 -14788140 - L1MD3 LINE L1 -108 7887 7633 2048 138 11 62 chr9 103074487 103074842 -14787785 - MER1B DNA MER1_type 0 337 1 3143 159 53 39 chr9 103074842 103075132 -14787495 - L1MD3 LINE L1 -362 7633 7325 268 200 0 0 chr9 103075142 103075197 -14787430 - L1MD3 LINE L1 -877 7118 7064 * 3562 265 92 22 chr9 103075193 103075915 -14786712 - L1ME1 LINE L1 -3958 2438 1768 1689 114 38 0 chr9 103075915 103076151 -14786476 - AluSx SINE Alu -21 291 47 3562 265 92 22 chr9 103076151 103077082 -14785545 - L1ME1 LINE L1 -4628 1768 669 525 237 101 0 chr9 103077099 103077238 -14785389 - L1ME3A LINE L1 -5 6165 6013 * 797 323 100 22 chr9 103077237 103077828 -14784799 - L1ME1 LINE L1 -5705 691 55 689 208 0 0 chr9 103077830 103077950 -14784677 - FRAM SINE Alu -56 120 1 315 85 0 0 chr9 103078240 103078287 -14784340 + (TG)n Simple_repeat Simple_repeat 1 47 0 301 248 257 9 chr9 103078591 103078743 -14783884 - MIR SINE MIR -44 218 31 308 307 59 7 chr9 103079484 103079637 -14782990 - MIR SINE MIR -12 250 90 258 310 172 0 chr9 103080288 103080404 -14782223 + MIR3 SINE MIR 15 150 -58 1892 153 31 0 chr9 103080756 103081050 -14781577 + AluJo SINE Alu 1 303 -9 2327 104 0 0 chr9 103081804 103082103 -14780524 - AluY SINE Alu -12 299 1 2468 77 3 0 chr9 103082104 103082403 -14780224 - AluSx SINE Alu -12 300 1 377 302 44 0 chr9 103082788 103082947 -14779680 - MIR SINE MIR -25 237 72 256 267 60 35 chr9 103083998 103084114 -14778513 - MIR SINE MIR -44 218 100 190 312 130 7 chr9 103084224 103084362 -14778265 + L2 LINE L2 3101 3255 -17 470 83 111 0 chr9 103084790 103084862 -14777765 - MADE1 DNA Mariner 0 80 1 338 191 101 11 chr9 103085127 103085216 -14777411 - MIR SINE MIR -97 165 69 242 250 43 54 chr9 103086281 103086354 -14776273 - MIR SINE MIR -141 121 48 7353 39 24 8 chr9 103086354 103087235 -14775392 - MER11D LTR ERVK 0 897 3 242 250 43 54 chr9 103087235 103087253 -14775374 - MIR SINE MIR -214 48 31 2234 98 10 26 chr9 103087404 103087710 -14774917 + AluSp SINE Alu 5 305 -8 2242 102 0 7 chr9 103087741 103088036 -14774591 + AluSq SINE Alu 1 293 -20 1926 141 0 7 chr9 103088175 103088466 -14774161 - AluSc SINE Alu -13 296 8 1487 199 0 34 chr9 103088898 103089190 -14773437 - AluJo SINE Alu -30 282 1 204 40 0 0 chr9 103089380 103089405 -14773222 + (A)n Simple_repeat Simple_repeat 1 25 0 290 246 78 94 chr9 103089768 103089959 -14772668 - MIR SINE MIR -11 251 64 206 244 0 78 chr9 103089996 103090086 -14772541 - MIR SINE MIR -108 100 18 2253 121 0 0 chr9 103090292 103090589 -14772038 - AluSx SINE Alu -15 297 1 2327 94 0 0 chr9 103090603 103090900 -14771727 - AluSx SINE Alu -15 297 1 488 256 130 14 chr9 103091042 103091257 -14771370 - MIR SINE MIR -21 241 2 495 110 330 0 chr9 103091611 103091711 -14770916 + L1PA14 LINE L1 6026 6158 -3 184 286 63 79 chr9 103092037 103092163 -14770464 + L2 LINE L2 2965 3088 -184 3680 152 12 40 chr9 103092481 103093161 -14769466 - L1MB3 LINE L1 -1 6182 5522 3169 85 28 11 chr9 103093161 103093598 -14769029 + MLT2A1 LTR ERVL 1 444 0 311 85 0 68 chr9 103093605 103093664 -14768963 + MLT2A2 LTR ERVL 399 453 0 394 86 40 0 chr9 103093676 103093742 -14768885 + MLT2A2 LTR ERVL 397 453 0 326 56 0 74 chr9 103093748 103093802 -14768825 + MLT2A2 LTR ERVL 404 453 0 297 89 71 36 chr9 103093832 103093888 -14768739 + MLT2A2 LTR ERVL 387 453 0 1644 202 31 3 chr9 103093888 103094412 -14768215 - L1MB3 LINE L1 -657 5526 4989 262 341 24 8 chr9 103094564 103094687 -14767940 + MIR SINE MIR 117 241 -21 449 319 84 9 chr9 103094724 103094950 -14767677 + MIR SINE MIR 8 250 -12 265 298 29 0 chr9 103096180 103096284 -14766343 - MIR3 SINE MIR 0 208 102 1051 255 4 0 chr9 103097618 103097853 -14764774 + MIR SINE MIR 6 241 -21 2434 85 7 0 chr9 103097867 103098173 -14764454 + AluSc SINE Alu 1 308 -1 466 225 94 25 chr9 103098207 103098367 -14764260 - MIR SINE MIR -72 190 20 2236 121 0 13 chr9 103098468 103098782 -14763845 + AluSx SINE Alu 1 310 -2 1296 147 124 31 chr9 103099133 103099428 -14763199 + AluJo SINE Alu 2 320 0 262 323 48 11 chr9 103101240 103101426 -14761201 + L2 LINE L2 2232 2424 -890 237 302 94 9 chr9 103102095 103102201 -14760426 - MIR SINE MIR -114 148 34 439 320 71 9 chr9 103102334 103102559 -14760068 + L3 LINE CR1 1328 1566 -11 218 287 59 30 chr9 103102779 103102880 -14759747 + MIR SINE MIR 17 121 -87 462 283 103 5 chr9 103104327 103104511 -14758116 + MIR SINE MIR 32 233 -29 378 0 0 0 chr9 103105635 103105677 -14756950 + (TG)n Simple_repeat Simple_repeat 2 43 0 1374 249 81 8 chr9 103106127 103106509 -14756118 + L1MC4 LINE L1 6467 6876 -1166 642 221 23 178 chr9 103106536 103106804 -14755823 + L1MC4 LINE L1 7493 7654 -388 337 87 0 0 chr9 103106804 103106850 -14755777 - MADE1 DNA Mariner 0 80 35 642 221 23 178 chr9 103106850 103107187 -14755440 + L1MC4 LINE L1 7654 8042 0 447 164 0 0 chr9 103107313 103107386 -14755241 + AluJ/FLAM SINE Alu 4 76 -236 1505 119 25 53 chr9 103107388 103107631 -14754996 + AluJb SINE Alu 49 284 -28 384 22 0 0 chr9 103107653 103107698 -14754929 + (CA)n Simple_repeat Simple_repeat 2 46 0 691 263 135 68 chr9 103107987 103108147 -14754480 + L1ME4a LINE L1 5378 5526 -595 2277 105 7 7 chr9 103108147 103108443 -14754184 + AluSc SINE Alu 1 296 -13 691 263 135 68 chr9 103108443 103108589 -14754038 + L1ME4a LINE L1 5526 5661 -460 1706 58 0 5 chr9 103108589 103108794 -14753833 + AluY SINE Alu 99 302 -9 691 263 135 68 chr9 103108794 103108859 -14753768 + L1ME4a LINE L1 5661 5720 -401 2004 127 11 3 chr9 103108859 103109188 -14753439 + AluSx SINE Alu 1 331 0 691 263 135 68 chr9 103109188 103109509 -14753118 + L1ME4a LINE L1 5720 6120 -1 24 0 0 0 chr9 103110103 103110127 -14752500 + AT_rich Low_complexity Low_complexity 1 24 0 420 320 155 29 chr9 103110194 103110613 -14752014 + L2 LINE L2 2506 2977 -337 537 258 66 101 chr9 103110815 103110962 -14751665 + MLT1L LTR MaLR 11 162 -453 1563 189 73 0 chr9 103110962 103111237 -14751390 - AluSx SINE Alu -17 295 1 537 258 66 101 chr9 103111237 103111397 -14751230 + MLT1L LTR MaLR 162 326 -289 1787 168 40 0 chr9 103111397 103111694 -14750933 + AluJo SINE Alu 1 309 -3 2003 119 21 7 chr9 103111702 103111987 -14750640 + AluSq SINE Alu 9 297 -16 537 258 66 101 chr9 103111987 103112076 -14750551 + MLT1L LTR MaLR 333 403 -212 226 314 14 14 chr9 103112310 103112380 -14750247 + L2 LINE L2 3199 3268 -4 370 274 81 8 chr9 103112854 103112978 -14749649 + MIR SINE MIR 8 140 -122 258 264 85 85 chr9 103113263 103113464 -14749163 + MIR SINE MIR 33 233 -29 286 279 12 12 chr9 103114459 103114545 -14748082 - L2 LINE L2 -54 3218 3133 183 326 54 65 chr9 103114801 103114985 -14747642 - MIR SINE MIR -34 228 47 181 174 0 65 chr9 103115754 103115800 -14746827 + L2 LINE L2 3271 3313 0 350 223 50 74 chr9 103116033 103116154 -14746473 - Charlie8 DNA MER1_type -2299 118 1 313 340 0 0 chr9 103116594 103116700 -14745927 - MIR SINE MIR -117 145 40 1828 144 37 27 chr9 103117277 103117576 -14745051 - AluJb SINE Alu -10 302 1 264 235 0 0 chr9 103117657 103117725 -14744902 + (CA)n Simple_repeat Simple_repeat 2 69 0 683 334 101 28 chr9 103118092 103119229 -14743398 + L2 LINE L2 1862 3157 -115 290 326 87 6 chr9 103119372 103119544 -14743083 + MIR SINE MIR 53 238 -24 250 282 13 13 chr9 103121371 103121449 -14741178 + MIR SINE MIR 21 98 -164 422 245 41 69 chr9 103121516 103121761 -14740866 + L1MEd LINE L1 1007 1244 -4875 421 303 67 20 chr9 103121757 103122011 -14740616 + HAL1 LINE L1 1375 1640 -867 * 1825 131 49 18 chr9 103122212 103122541 -14740086 - MER44D DNA MER2_type 0 609 1 811 182 19 121 chr9 103122935 103123077 -14739550 - L1MC4 LINE L1 0 8042 7938 441 0 0 0 chr9 103123077 103123126 -14739501 + (CA)n Simple_repeat Simple_repeat 2 50 0 811 182 19 121 chr9 103123126 103123247 -14739380 - L1MC4 LINE L1 -104 7938 7806 1420 185 81 3 chr9 103123737 103124034 -14738593 - L1MC4 LINE L1 -209 7833 7514 230 208 0 0 chr9 103124727 103124775 -14737852 + L2 LINE L2 3210 3257 -15 302 262 177 30 chr9 103125865 103126029 -14736598 - L1ME2 LINE L1 -297 5867 5681 580 265 94 43 chr9 103126051 103126463 -14736164 - L1ME2 LINE L1 -561 5603 5167 714 268 149 7 chr9 103126513 103126815 -14735812 + L2 LINE L2 2439 2783 -531 987 163 7 0 chr9 103126819 103126972 -14735655 + FRAM SINE Alu 1 153 -23 833 256 103 39 chr9 103127013 103127400 -14735227 + L2 LINE L2 2804 3215 -98 2129 120 40 0 chr9 103127715 103128014 -14734613 + AluSq SINE Alu 1 311 -2 388 291 101 36 chr9 103128914 103129358 -14733269 + HAL1b LINE L1 67 539 -809 2801 185 62 98 chr9 103129721 103130264 -14732363 + L1MC5 LINE L1 6476 7037 -924 360 43 0 0 chr9 103130264 103130310 -14732317 + (TG)n Simple_repeat Simple_repeat 1 46 0 2801 185 62 98 chr9 103130310 103130329 -14732298 + L1MC5 LINE L1 7037 7055 -906 495 113 0 0 chr9 103130329 103130409 -14732218 + (TA)n Simple_repeat Simple_repeat 2 81 0 2801 185 62 98 chr9 103130409 103130926 -14731701 + L1MC5 LINE L1 7055 7528 -433 2278 56 0 0 chr9 103131158 103131425 -14731202 + AluY SINE Alu 34 300 -11 22 35 0 0 chr9 103131462 103131491 -14731136 + AT_rich Low_complexity Low_complexity 1 29 0 589 209 153 10 chr9 103131703 103131899 -14730728 - MIR SINE MIR -2 260 37 507 259 45 25 chr9 103132515 103132716 -14729911 + L2 LINE L2 3095 3299 -14 333 289 42 35 chr9 103133300 103133442 -14729185 - MIR SINE MIR -51 211 69 332 285 44 29 chr9 103133810 103133947 -14728680 - MIR SINE MIR -118 144 6 611 247 76 44 chr9 103134026 103134488 -14728139 + LTR33A LTR ERVL 2 523 0 306 213 0 0 chr9 103134817 103134878 -14727749 + MER103 DNA DNA 14 74 -92 293 253 188 18 chr9 103136059 103136229 -14726398 + MIR SINE MIR 20 218 -44 2519 55 0 0 chr9 103136341 103136630 -14725997 + AluY SINE Alu 2 290 -21 275 187 160 13 chr9 103136773 103136848 -14725779 - L2 LINE L2 -1 3271 3186 2530 55 0 3 chr9 103137116 103137408 -14725219 - AluY SINE Alu -16 295 5 2047 122 3 14 chr9 103137912 103138208 -14724419 + AluY SINE Alu 1 293 -18 212 236 55 0 chr9 103138302 103138357 -14724270 - L2 LINE L2 -1 3271 3214 2324 101 3 0 chr9 103138892 103139189 -14723438 + AluSp SINE Alu 1 298 -15 204 40 0 0 chr9 103139274 103139299 -14723328 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 515 316 83 0 chr9 103139537 103139755 -14722872 - MIR SINE MIR -7 255 20 3142 181 17 2 chr9 103140132 103140724 -14721903 + L1MB4 LINE L1 5566 6166 -14 620 194 25 27 chr9 103141218 103141395 -14721232 + L1MA4 LINE L1 5661 5820 -301 618 75 0 0 chr9 103143602 103143695 -14718932 + (GA)n Simple_repeat Simple_repeat 1 93 0 236 294 84 0 chr9 103143948 103144067 -14718560 - MIR SINE MIR -70 192 64 466 274 24 0 chr9 103144432 103144556 -14718071 + L1MC4a LINE L1 5584 5710 -411 1629 162 25 21 chr9 103144596 103144880 -14717747 + AluJo SINE Alu 2 286 -26 26 50 0 0 chr9 103144880 103144920 -14717707 + AT_rich Low_complexity Low_complexity 1 40 0 207 165 10 206 chr9 103144987 103145084 -14717543 - MER5B DNA MER1_type -98 80 3 2164 109 0 0 chr9 103145392 103145668 -14716959 - AluSc SINE Alu -21 288 13 1254 141 35 5 chr9 103145866 103146064 -14716563 - AluJo SINE Alu -31 281 78 778 214 0 28 chr9 103146304 103146482 -14716145 + MER104 DNA Tc2 1 173 -7 260 259 35 12 chr9 103146571 103146656 -14715971 - L1ME LINE L1 -343 5778 5692 186 324 155 22 chr9 103146769 103147047 -14715580 + L2 LINE L2 2540 2854 -460 424 279 78 28 chr9 103147212 103147391 -14715236 - MIR SINE MIR -61 201 14 233 307 34 11 chr9 103148800 103148888 -14713739 + MIR SINE MIR 93 182 -80 1121 133 0 0 chr9 103149471 103149629 -14712998 + AluSg/x SINE Alu 137 294 -18 257 300 88 19 chr9 103149692 103149852 -14712775 - MIR SINE MIR 0 262 92 553 351 126 24 chr9 103150460 103150873 -14711754 - L2 LINE L2 0 3272 2818 226 320 0 13 chr9 103151099 103151177 -14711450 + Charlie4 DNA MER1_type 1884 1960 -1 2657 163 16 35 chr9 103151286 103151801 -14710826 - L1MB8 LINE L1 -2 6176 5672 1913 148 0 11 chr9 103152059 103152343 -14710284 + AluJo SINE Alu 30 310 -2 342 328 11 37 chr9 103153973 103154162 -14708465 + L1MC4a LINE L1 5728 5911 -1897 27 0 0 0 chr9 103154166 103154193 -14708434 + AT_rich Low_complexity Low_complexity 1 27 0 186 238 24 0 chr9 103155073 103155115 -14707512 + MIR SINE MIR 104 146 -62 249 390 60 6 chr9 103155210 103155392 -14707235 + L2 LINE L2 2596 2787 -527 219 247 84 111 chr9 103156091 103156224 -14706403 + L2 LINE L2 2852 2980 -292 990 176 70 30 chr9 103156224 103156423 -14706204 + MER3 DNA MER1_type 3 209 0 219 247 84 111 chr9 103156423 103156479 -14706148 + L2 LINE L2 2980 3036 -236 2458 86 0 13 chr9 103156601 103156915 -14705712 - AluSx SINE Alu -2 310 1 291 279 117 63 chr9 103157536 103157758 -14704869 - MIR SINE MIR -6 256 23 359 21 21 0 chr9 103158531 103158579 -14704048 + (CA)n Simple_repeat Simple_repeat 2 50 0 554 251 74 65 chr9 103159830 103160061 -14702566 + MIR SINE MIR 30 262 0 334 263 67 98 chr9 103162218 103162412 -14700215 + MIR SINE MIR 64 251 -11 204 40 0 0 chr9 103162780 103162805 -14699822 + (T)n Simple_repeat Simple_repeat 1 25 0 1423 201 0 32 chr9 103162995 103163308 -14699319 + AluJo SINE Alu 1 303 -9 188 255 0 0 chr9 103163338 103163389 -14699238 - L2 LINE L2 -9 3263 3213 460 311 151 29 chr9 103165318 103165446 -14697181 - L2 LINE L2 -3 3269 3158 222 37 0 0 chr9 103165446 103165473 -14697154 + (GA)n Simple_repeat Simple_repeat 2 28 0 460 311 151 29 chr9 103165473 103165517 -14697110 - L2 LINE L2 -114 3158 3121 2160 119 0 0 chr9 103165517 103165820 -14696807 + AluSx SINE Alu 1 303 -9 460 311 151 29 chr9 103165820 103165958 -14696669 - L2 LINE L2 -151 3121 2920 258 217 349 0 chr9 103166113 103166196 -14696431 + MIR SINE MIR 30 141 -67 247 311 68 0 chr9 103167379 103167453 -14695174 + L2 LINE L2 3152 3230 -42 238 287 101 23 chr9 103168755 103168884 -14693743 - L2 LINE L2 -926 2388 2250 209 250 0 0 chr9 103169439 103169483 -14693144 - L3 LINE CR1 -235 1342 1299 274 297 58 52 chr9 103169536 103169691 -14692936 - L3 LINE CR1 -410 1167 1012 1215 204 67 3 chr9 103169701 103169985 -14692642 + MER33 DNA MER1_type 9 310 -14 2021 118 0 10 chr9 103169991 103170305 -14692322 - AluSx SINE Alu -1 311 1 550 337 124 40 chr9 103170350 103170795 -14691832 - L3 LINE CR1 -561 1016 535 227 140 20 0 chr9 103171487 103171537 -14691090 + (TG)n Simple_repeat Simple_repeat 2 52 0 265 138 69 138 chr9 103172681 103172768 -14689859 + MIR SINE MIR 71 151 -111 590 277 38 51 chr9 103173300 103173535 -14689092 - MLT1K LTR MaLR -11 577 346 276 297 33 0 chr9 103173643 103173734 -14688893 - MLT1K LTR MaLR -374 214 121 350 268 38 25 chr9 103174429 103174579 -14688048 - MIR SINE MIR -63 145 1 279 133 0 0 chr9 103174913 103174958 -14687669 + (TG)n Simple_repeat Simple_repeat 2 46 0 237 325 34 51 chr9 103175452 103175569 -14687058 - L2 LINE L2 -41 3231 3117 294 320 45 6 chr9 103175608 103175764 -14686863 - MIR SINE MIR -76 186 25 257 274 74 32 chr9 103176038 103176133 -14686494 + L2 LINE L2 3169 3267 -5 395 111 0 0 chr9 103176684 103176738 -14685889 + MER3 DNA MER1_type 156 209 0 299 184 0 0 chr9 103176745 103176794 -14685833 + L2 LINE L2 2988 3036 -236 1950 109 13 19 chr9 103176916 103177228 -14685399 - AluSx SINE Alu -2 310 1 461 351 49 9 chr9 103177828 103178053 -14684574 - MIR SINE MIR 0 262 29 210 289 0 0 chr9 103179101 103179153 -14683474 + L2 LINE L2 3262 3313 0 207 329 92 0 chr9 103179183 103179259 -14683368 - L2 LINE L2 -216 3056 2974 1993 139 0 0 chr9 103179319 103179613 -14683014 + AluSx SINE Alu 1 294 -18 1920 144 0 25 chr9 103179613 103179933 -14682694 + AluSx SINE Alu 1 312 0 278 258 15 15 chr9 103180008 103180074 -14682553 + L2 LINE L2 3009 3074 -239 326 175 0 0 chr9 103180163 103180220 -14682407 + MIR SINE MIR 99 155 -107 472 340 65 57 chr9 103180900 103181271 -14681356 - L2 LINE L2 0 3272 2899 1610 239 109 29 chr9 103184108 103184594 -14678033 + L1MC4 LINE L1 6458 6982 -1060 439 223 151 6 chr9 103184716 103184882 -14677745 - MER20B DNA MER1_type -63 720 531 195 42 0 0 chr9 103185139 103185163 -14677464 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 292 336 50 9 chr9 103185193 103185330 -14677297 + MIR SINE MIR 2 144 -64 335 282 137 0 chr9 103186269 103186393 -14676234 + L2 LINE L2 3154 3294 -19 298 309 129 37 chr9 103187352 103187569 -14675058 - L2 LINE L2 -21 3251 3015 * 406 230 128 46 chr9 103187565 103187758 -14674869 + MIR SINE MIR 13 235 -27 477 272 80 25 chr9 103188768 103188930 -14673697 - MIR SINE MIR -75 187 17 416 268 153 11 chr9 103190637 103190829 -14671798 - MIR SINE MIR -12 250 35 2108 130 0 0 chr9 103191605 103191905 -14670722 - AluSx SINE Alu -12 300 1 1668 144 0 61 chr9 103192268 103192580 -14670047 + AluJb SINE Alu 1 293 -19 623 157 6 38 chr9 103192587 103192746 -14669881 + GA-rich Low_complexity Low_complexity 1 154 0 238 288 68 17 chr9 103192829 103192947 -14669680 + L1ME4a LINE L1 5998 6121 0 * 352 248 63 27 chr9 103192929 103193151 -14669476 + L1ME4a LINE L1 5678 5907 -214 346 132 15 44 chr9 103193159 103193227 -14669400 + L1ME4a LINE L1 6042 6107 -14 375 222 74 52 chr9 103193739 103193874 -14668753 - L2 LINE L2 -6 3266 3129 201 376 127 17 chr9 103194171 103194344 -14668283 - L2 LINE L2 -461 2853 2662 539 303 46 0 chr9 103195448 103195623 -14667004 - MIR SINE MIR -60 202 20 457 247 11 55 chr9 103195628 103195810 -14666817 - L1ME1 LINE L1 0 6164 5991 983 216 15 59 chr9 103195895 103196168 -14666459 - L1ME1 LINE L1 -32 6134 5874 1896 118 0 28 chr9 103196385 103196714 -14665913 - AluSc SINE Alu 0 321 1 242 301 14 14 chr9 103196994 103197067 -14665560 - MIR3 SINE MIR -53 155 83 2948 73 30 18 chr9 103197405 103197804 -14664823 + MLT2A1 LTR ERVL 1 404 -40 247 244 0 0 chr9 103197946 103197991 -14664636 + LTR16B LTR ERVL 418 462 -2 385 71 18 0 chr9 103198063 103198119 -14664508 + MLT2A2 LTR ERVL 397 453 0 307 295 132 16 chr9 103198140 103198269 -14664358 - L2 LINE L2 -13 3259 3116 2615 263 95 40 chr9 103199487 103199807 -14662820 - L2 LINE L2 -832 2482 2181 2285 81 3 3 chr9 103199807 103200114 -14662513 + AluSp SINE Alu 1 307 -6 2615 263 95 40 chr9 103200114 103200808 -14661819 - L2 LINE L2 -1133 2181 1413 21 89 0 0 chr9 103201261 103201317 -14661310 + AT_rich Low_complexity Low_complexity 1 56 0 279 365 94 18 chr9 103202611 103202781 -14659846 - MIR SINE MIR -60 202 20 234 0 0 0 chr9 103203230 103203256 -14659371 + (CA)n Simple_repeat Simple_repeat 2 27 0 2115 120 0 0 chr9 103203369 103203668 -14658959 - AluSq SINE Alu -14 299 1 184 210 0 173 chr9 103204226 103204307 -14658320 - L2 LINE L2 0 3313 3247 2241 137 31 14 chr9 103204397 103204755 -14657872 - THE1B LTR MaLR 0 364 1 12208 87 3 2 chr9 103204755 103206334 -14656293 - THE1B-int LTR MaLR 0 1580 1 2274 131 28 14 chr9 103206334 103206693 -14655934 - THE1B LTR MaLR 0 364 1 520 317 62 89 chr9 103206708 103207068 -14655559 - L2 LINE L2 -230 3042 2684 199 291 218 36 chr9 103208196 103208272 -14654355 + MIR SINE MIR 2 63 -199 2017 137 19 30 chr9 103208272 103208637 -14653990 + MER46B DNA MER2_type 1 236 0 199 291 218 36 chr9 103208637 103208725 -14653902 + MIR SINE MIR 63 196 -66 326 367 18 18 chr9 103209147 103209316 -14653311 - MIR SINE MIR -57 205 37 2059 137 0 0 chr9 103209724 103210030 -14652597 + AluSx SINE Alu 1 306 -6 2091 105 13 7 chr9 103210306 103210612 -14652015 + AluSx SINE Alu 3 310 -2 1283 199 37 4 chr9 103211112 103211383 -14651244 - AluJb SINE Alu -30 282 3 2240 95 0 0 chr9 103212077 103212372 -14650255 - AluSq SINE Alu -18 295 1 286 274 63 38 chr9 103212731 103213049 -14649578 + L1ME3A LINE L1 5497 5774 -396 395 238 92 57 chr9 103213100 103213306 -14649321 + L1ME3A LINE L1 5754 5962 -208 181 277 75 53 chr9 103213537 103213631 -14648996 - MIR SINE MIR -55 207 112 22 0 0 0 chr9 103213647 103213669 -14648958 + AT_rich Low_complexity Low_complexity 1 22 0 1253 176 60 0 chr9 103213738 103213954 -14648673 - MER46A DNA MER2_type 0 236 8 29 28 0 0 chr9 103214386 103214422 -14648205 + AT_rich Low_complexity Low_complexity 1 36 0 339 270 61 0 chr9 103215431 103215546 -14647081 + L1ME4a LINE L1 5801 5922 -199 212 350 7 49 chr9 103216430 103216573 -14646054 + MIR3 SINE MIR 48 184 -24 408 308 102 47 chr9 103216686 103216916 -14645711 + MIR SINE MIR 2 256 -6 326 307 138 28 chr9 103218867 103219195 -14643432 + L2 LINE L2 2729 3084 -188 24 67 0 0 chr9 103219622 103219667 -14642960 + AT_rich Low_complexity Low_complexity 1 45 0 279 309 0 71 chr9 103220506 103220632 -14641995 - L2 LINE L2 -26 3287 3171 201 94 0 0 chr9 103221792 103221824 -14640803 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 422 239 228 30 chr9 103222049 103222216 -14640411 + MIR SINE MIR 50 249 -13 245 268 187 41 chr9 103222742 103222865 -14639762 - MIR SINE MIR -115 147 7 25 51 0 0 chr9 103223636 103223675 -14638952 + AT_rich Low_complexity Low_complexity 1 39 0 364 237 47 65 chr9 103223759 103223928 -14638699 + HAL1 LINE L1 7 172 -2335 1121 182 9 19 chr9 103223938 103224152 -14638475 + MER20 DNA MER1_type 2 213 -6 319 312 174 36 chr9 103224192 103224439 -14638188 + HAL1 LINE L1 236 516 -1991 1924 223 105 24 chr9 103224730 103225427 -14637200 + HAL1 LINE L1 790 1641 -866 1959 135 7 4 chr9 103225427 103225708 -14636919 + AluSx SINE Alu 14 295 -17 1924 223 105 24 chr9 103225708 103225841 -14636786 + HAL1 LINE L1 1641 1762 -745 555 242 153 79 chr9 103225851 103226268 -14636359 + HAL1 LINE L1 2060 2507 0 21 0 0 0 chr9 103226534 103226555 -14636072 + AT_rich Low_complexity Low_complexity 1 21 0 367 321 56 24 chr9 103226941 103227193 -14635434 + MIR SINE MIR 3 262 0 2922 159 31 33 chr9 103227496 103228038 -14634589 + L1MB3 LINE L1 5642 6182 -1 2132 119 0 7 chr9 103229138 103229431 -14633196 + AluSq SINE Alu 1 291 -22 714 276 60 20 chr9 103230193 103230443 -14632184 - MIR SINE MIR -2 260 1 1593 142 0 0 chr9 103230801 103231033 -14631594 - AluSg SINE Alu -78 232 1 234 0 0 0 chr9 103231615 103231641 -14630986 + (A)n Simple_repeat Simple_repeat 1 26 0 447 330 16 27 chr9 103231866 103232051 -14630576 + MIR SINE MIR 61 243 -19 893 245 47 0 chr9 103232335 103232547 -14630080 + MIR SINE MIR 2 223 -39 486 236 80 11 chr9 103232547 103232730 -14629897 + L1ME1 LINE L1 5998 6161 -5 227 270 95 0 chr9 103232728 103232791 -14629836 + L1MB8 LINE L1 6107 6175 -3 * 316 265 157 0 chr9 103233558 103233660 -14628967 + L2 LINE L2 3137 3254 -18 610 300 109 4 chr9 103233896 103234126 -14628501 + MIR SINE MIR 7 260 -2 724 228 14 0 chr9 103234316 103234461 -14628166 + MIR SINE MIR 19 165 -97 690 217 7 20 chr9 103234461 103234613 -14628014 + L1ME3A LINE L1 5969 6118 -52 876 160 0 0 chr9 103234640 103234771 -14627856 - FLAM_A SINE Alu -2 131 1 358 315 37 0 chr9 103234840 103234948 -14627679 + MIR SINE MIR 151 262 0 414 323 26 13 chr9 103235152 103235307 -14627320 + MIR SINE MIR 35 191 -71 2213 125 143 8 chr9 103235739 103236116 -14626511 + MSTA LTR MaLR 1 428 0 245 254 36 0 chr9 103236341 103236396 -14626231 - MIR SINE MIR -73 135 79 346 287 108 8 chr9 103236616 103236745 -14625882 - MIR SINE MIR -112 150 9 223 127 0 73 chr9 103236830 103236885 -14625742 + (GGAAA)n Simple_repeat Simple_repeat 5 55 0 316 331 45 19 chr9 103237554 103237708 -14624919 + MIR SINE MIR 28 185 -77 199 170 11 23 chr9 103237948 103238009 -14624618 + MIR SINE MIR 104 162 -100 495 300 77 6 chr9 103238393 103238563 -14624064 - MIR SINE MIR -61 201 20 500 168 32 0 chr9 103238772 103238867 -14623760 + MIR SINE MIR 48 145 -117 189 0 0 0 chr9 103240424 103240445 -14622182 + (A)n Simple_repeat Simple_repeat 1 21 0 444 232 28 78 chr9 103241527 103241669 -14620958 - MIR SINE MIR -114 148 14 479 297 42 12 chr9 103242240 103242405 -14620222 - MIR SINE MIR -1 261 92 1155 120 0 0 chr9 103242652 103242810 -14619817 + AluSg/x SINE Alu 137 294 -18 219 280 70 60 chr9 103242811 103242911 -14619716 - MIR3 SINE MIR -104 104 4 303 243 103 76 chr9 103244005 103244049 -14618578 + MIR SINE MIR 63 104 -158 1455 204 19 72 chr9 103244049 103244412 -14618215 + MER2 DNA MER2_type 1 344 0 303 243 103 76 chr9 103244412 103244552 -14618075 + MIR SINE MIR 104 252 -10 1160 141 17 90 chr9 103244634 103244868 -14617759 - AluJo SINE Alu -10 302 86 365 246 65 36 chr9 103245992 103246130 -14616497 + L2 LINE L2 2709 2850 -464 186 351 157 55 chr9 103246163 103246488 -14616139 + L2 LINE L2 2915 3272 0 592 297 44 0 chr9 103246873 103247055 -14615572 - MIR SINE MIR -8 254 65 297 341 143 37 chr9 103248673 103248890 -14613737 - L2 LINE L2 -5 3267 3028 297 269 39 13 chr9 103249138 103249216 -14613411 + L2 LINE L2 3191 3270 -2 204 67 0 0 chr9 103249425 103249455 -14613172 + (GA)n Simple_repeat Simple_repeat 2 31 0 297 0 0 0 chr9 103249455 103249488 -14613139 + (CA)n Simple_repeat Simple_repeat 2 34 0 252 0 0 0 chr9 103249487 103249515 -14613112 + (GA)n Simple_repeat Simple_repeat 2 29 0 * 297 0 0 0 chr9 103249514 103249547 -14613080 + (TG)n Simple_repeat Simple_repeat 1 33 0 1018 268 112 27 chr9 103250568 103251094 -14611533 + L1ME4a LINE L1 5549 6119 -2 193 324 86 0 chr9 103251722 103251827 -14610800 + MIR SINE MIR 117 230 -32 434 274 59 54 chr9 103252244 103252430 -14610197 - MIR SINE MIR -31 231 45 192 77 0 0 chr9 103253138 103253164 -14609463 + (TTC)n Simple_repeat Simple_repeat 2 27 0 440 250 96 13 chr9 103254521 103254677 -14607950 - L1ME4a LINE L1 -258 5863 5695 622 173 39 62 chr9 103255214 103255393 -14607234 - HsTC2 DNA Tc2 -152 1746 1572 1589 223 68 5 chr9 103255396 103255778 -14606849 - HsTC2 DNA Tc2 -1418 480 75 435 245 152 15 chr9 103256004 103256208 -14606419 - MIR SINE MIR -10 252 21 570 308 7 0 chr9 103257171 103257317 -14605310 - MIR SINE MIR -70 192 46 2126 128 0 0 chr9 103257906 103258196 -14604431 - AluSx SINE Alu -22 290 1 185 295 154 0 chr9 103258791 103258869 -14603758 - L2 LINE L2 -40 3232 3143 356 248 142 18 chr9 103258959 103259072 -14603555 - MIR SINE MIR -70 192 66 2361 104 3 0 chr9 103260897 103261206 -14601421 - AluSx SINE Alu -2 310 1 276 30 0 0 chr9 103261365 103261398 -14601229 + (ATTG)n Simple_repeat Simple_repeat 4 36 0 1412 189 26 19 chr9 103261398 103261668 -14600959 - AluJb SINE Alu -32 280 9 309 120 0 23 chr9 103261679 103261741 -14600886 + L1MB7 LINE L1 6106 6164 -2 2394 109 0 3 chr9 103261892 103262203 -14600424 + AluSx SINE Alu 3 312 0 411 269 15 46 chr9 103262420 103262550 -14600077 - MIR3 SINE MIR -78 130 5 2017 148 7 3 chr9 103263141 103263444 -14599183 - AluSx SINE Alu -8 304 1 350 175 0 0 chr9 103264389 103264446 -14598181 + L2 LINE L2 3257 3313 0 600 289 104 9 chr9 103264577 103264788 -14597839 + MIR SINE MIR 31 261 -1 21 36 0 0 chr9 103265094 103265122 -14597505 + AT_rich Low_complexity Low_complexity 1 28 0 372 349 63 11 chr9 103265299 103265488 -14597139 - MIR SINE MIR -53 209 11 488 213 98 29 chr9 103266901 103267075 -14595552 - L1ME4a LINE L1 -6 6115 5930 392 287 22 22 chr9 103267149 103267285 -14595342 + MIR SINE MIR 93 228 -34 2128 136 0 16 chr9 103267421 103267738 -14594889 + AluSx SINE Alu 1 312 0 1523 170 18 22 chr9 103267868 103268144 -14594483 - AluJb SINE Alu -29 283 9 188 200 18 0 chr9 103268416 103268471 -14594156 + CT-rich Low_complexity Low_complexity 2 57 0 234 336 94 16 chr9 103269272 103269400 -14593227 + L2 LINE L2 3123 3260 -12 2188 105 3 3 chr9 103269422 103269718 -14592909 + AluSg SINE Alu 4 299 -11 234 81 0 0 chr9 103269718 103269755 -14592872 + (GA)n Simple_repeat Simple_repeat 1 37 0 323 301 91 22 chr9 103269879 103270082 -14592545 - MIR3 SINE MIR -50 212 7 285 270 142 27 chr9 103271449 103271597 -14591030 - MIR SINE MIR -10 252 88 1069 200 0 24 chr9 103272017 103272222 -14590405 - AluJo SINE Alu -28 284 85 268 299 57 6 chr9 103273201 103273358 -14589269 - L1M4 LINE L1 -701 5473 5309 287 288 88 16 chr9 103273561 103273686 -14588941 - L1P LINE L1 -1128 5018 4885 31 0 0 0 chr9 103274853 103274884 -14587743 + AT_rich Low_complexity Low_complexity 1 31 0 2172 109 0 0 chr9 103274884 103275168 -14587459 - AluSx SINE Alu -28 284 1 183 277 191 50 chr9 103275187 103275328 -14587299 + L2 LINE L2 3111 3271 -1 2173 115 0 13 chr9 103275457 103275761 -14586866 + AluSx SINE Alu 5 304 -8 207 139 0 0 chr9 103275820 103275856 -14586771 + (TTCA)n Simple_repeat Simple_repeat 4 39 0 476 216 39 0 chr9 103277280 103277382 -14585245 - MIR SINE MIR -58 150 45 426 281 56 11 chr9 103277800 103277949 -14584678 + MIR3 SINE MIR 53 202 -6 239 302 95 43 chr9 103278239 103278282 -14584345 + L2 LINE L2 3151 3190 -82 1947 108 0 0 chr9 103278282 103278540 -14584087 - AluSx SINE Alu -17 295 38 239 302 95 43 chr9 103278540 103278612 -14584015 + L2 LINE L2 3190 3272 0 2261 75 38 0 chr9 103278658 103278950 -14583677 - AluSp SINE Alu -10 303 1 513 47 0 0 chr9 103279871 103279935 -14582692 + (CA)n Simple_repeat Simple_repeat 2 65 0 243 280 97 114 chr9 103280339 103280450 -14582177 - MER117 DNA MER1_type -23 174 66 1792 122 41 11 chr9 103280450 103280721 -14581906 - AluSx SINE Alu -33 279 1 243 280 97 114 chr9 103280721 103280784 -14581843 - MER117 DNA MER1_type -131 66 3 441 95 0 0 chr9 103281000 103281063 -14581564 + (A)n Simple_repeat Simple_repeat 1 63 0 1791 148 0 47 chr9 103281116 103281434 -14581193 + AluSx SINE Alu 1 303 -9 2290 94 3 3 chr9 103281470 103281768 -14580859 + AluSp SINE Alu 16 313 0 1011 224 27 9 chr9 103281800 103282023 -14580604 - MIR SINE MIR -26 236 10 480 246 29 112 chr9 103282624 103282894 -14579733 - MIR SINE MIR -10 252 4 186 43 0 0 chr9 103283400 103283423 -14579204 + (A)n Simple_repeat Simple_repeat 1 23 0 515 282 32 27 chr9 103283738 103283926 -14578701 - MER5A DNA MER1_type 0 189 1 21 0 0 0 chr9 103284536 103284557 -14578070 + AT_rich Low_complexity Low_complexity 1 21 0 288 289 134 52 chr9 103285968 103286188 -14576439 + MIR SINE MIR 6 239 -23 382 281 15 30 chr9 103286359 103286494 -14576133 + MARNA DNA Mariner 207 339 -247 281 274 91 41 chr9 103286712 103286835 -14575792 + MIR SINE MIR 46 177 -63 328 203 170 59 chr9 103287674 103287827 -14574800 - HAL1 LINE L1 -11 2496 2327 456 228 138 8 chr9 103287933 103288056 -14574571 - L2 LINE L2 -5 3308 3170 21 0 0 0 chr9 103288086 103288107 -14574520 + AT_rich Low_complexity Low_complexity 1 21 0 249 200 0 18 chr9 103288119 103288174 -14574453 - MIR SINE MIR -29 233 180 733 224 81 72 chr9 103288182 103288503 -14574124 - L2 LINE L2 -1406 1908 1585 566 293 18 31 chr9 103288531 103288760 -14573867 + L2 LINE L2 3043 3268 -45 334 250 114 0 chr9 103288788 103288920 -14573707 - L2 LINE L2 -1755 1559 1413 654 243 14 0 chr9 103288922 103289070 -14573557 - HAL1 LINE L1 -905 1602 1453 1701 272 114 33 chr9 103289583 103290044 -14572583 - L1ME3A LINE L1 -219 5951 5529 1613 176 24 14 chr9 103290044 103290340 -14572287 - AluJo SINE Alu -13 299 1 1701 272 114 33 chr9 103290340 103291210 -14571417 - L1ME3A LINE L1 -641 5529 4503 598 334 58 15 chr9 103291307 103291717 -14570910 - L1ME3A LINE L1 -2406 3740 3313 271 217 261 0 chr9 103291713 103291805 -14570822 - HAL1 LINE L1 -2381 126 11 * 567 188 38 38 chr9 103291835 103291968 -14570659 + MIR SINE MIR 125 257 -5 2158 125 7 0 chr9 103292600 103292896 -14569731 + AluSx SINE Alu 11 308 -4 23 0 0 0 chr9 103293106 103293129 -14569498 + AT_rich Low_complexity Low_complexity 1 23 0 203 279 0 0 chr9 103293345 103293388 -14569239 + (CA)n Simple_repeat Simple_repeat 1 43 0 557 305 91 30 chr9 103293401 103293765 -14568862 + L1ME4a LINE L1 5497 5882 -239 236 342 88 9 chr9 103294380 103294494 -14568133 - MIR SINE MIR -112 150 28 212 360 23 0 chr9 103295243 103295329 -14567298 - MIR SINE MIR -13 249 162 548 237 66 50 chr9 103295442 103295640 -14566987 - MIR SINE MIR -42 220 20 503 276 66 62 chr9 103295750 103295993 -14566634 - MIR SINE MIR -12 250 7 308 301 116 0 chr9 103297020 103297166 -14565461 + L2 LINE L2 2936 3098 -174 273 302 79 24 chr9 103297844 103297970 -14564657 - L2 LINE L2 -7 3306 3174 384 396 51 18 chr9 103298267 103298540 -14564087 - L2 LINE L2 -590 2724 2443 222 211 19 0 chr9 103299351 103299403 -14563224 + G-rich Low_complexity Low_complexity 5 57 0 201 94 0 0 chr9 103300664 103300696 -14561931 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 422 239 228 30 chr9 103300921 103301088 -14561539 + MIR SINE MIR 50 249 -13 245 268 187 41 chr9 103301614 103301737 -14560890 - MIR SINE MIR -115 147 7 25 51 0 0 chr9 103302508 103302547 -14560080 + AT_rich Low_complexity Low_complexity 1 39 0 364 237 47 65 chr9 103302631 103302800 -14559827 + HAL1 LINE L1 7 172 -2335 1083 183 14 19 chr9 103302810 103303023 -14559604 + MER20 DNA MER1_type 2 213 -6 1924 248 140 46 chr9 103303063 103304256 -14558371 + HAL1 LINE L1 236 1643 -864 1959 135 7 4 chr9 103304256 103304537 -14558090 + AluSx SINE Alu 14 295 -17 1924 248 140 46 chr9 103304537 103304670 -14557957 + HAL1 LINE L1 1643 1762 -745 604 237 153 79 chr9 103304680 103305097 -14557530 + HAL1 LINE L1 2060 2507 0 21 0 0 0 chr9 103305364 103305385 -14557242 + AT_rich Low_complexity Low_complexity 1 21 0 232 275 14 0 chr9 103305574 103305643 -14556984 + G-rich Low_complexity Low_complexity 3 72 0 290 267 147 47 chr9 103306430 103306838 -14555789 - L1M4 LINE L1 -3013 3133 2685 388 318 56 24 chr9 103307100 103307352 -14555275 + MIR SINE MIR 3 262 0 2929 157 31 33 chr9 103307655 103308197 -14554430 + L1MB3 LINE L1 5642 6182 -1 2132 119 0 7 chr9 103309296 103309589 -14553038 + AluSq SINE Alu 1 291 -22 714 276 60 20 chr9 103310351 103310601 -14552026 - MIR SINE MIR -2 260 1 247 308 98 8 chr9 103310904 103311037 -14551590 + MIR SINE MIR 69 213 -49 201 118 59 0 chr9 103311827 103311861 -14550766 + CT-rich Low_complexity Low_complexity 1 36 0 331 304 127 33 chr9 103311867 103312048 -14550579 + MIR SINE MIR 6 203 -59 354 331 61 12 chr9 103312365 103312528 -14550099 - MIR3 SINE MIR 0 208 38 382 309 40 76 chr9 103312631 103312880 -14549747 - L2 LINE L2 -95 3177 2938 291 327 64 0 chr9 103314050 103314160 -14548467 - MIR SINE MIR -118 144 28 307 235 204 0 chr9 103314387 103314485 -14548142 - L1MC4 LINE L1 -142 7900 7783 490 214 176 8 chr9 103314485 103314616 -14548011 + MSTD LTR MaLR 1 153 -243 1152 122 23 0 chr9 103314650 103314822 -14547805 + MSTD LTR MaLR 219 394 -2 742 231 190 8 chr9 103314823 103315070 -14547557 - L1MC4 LINE L1 -254 7788 7497 2173 216 71 20 chr9 103315077 103315833 -14546794 - L1MC4 LINE L1 -633 7409 6467 219 36 0 0 chr9 103316278 103316306 -14546321 + (TCTCTG)n Simple_repeat Simple_repeat 3 30 0 * 468 0 0 0 chr9 103316305 103316357 -14546270 + (CA)n Simple_repeat Simple_repeat 1 52 0 192 77 0 0 chr9 103316794 103316820 -14545807 + (T)n Simple_repeat Simple_repeat 1 26 0 757 271 96 30 chr9 103317557 103318091 -14544536 + L1ME4a LINE L1 5341 5909 -212 309 245 27 75 chr9 103318447 103318594 -14544033 + L1ME4a LINE L1 5966 6105 -16 186 128 0 0 chr9 103319116 103319155 -14543472 + (CA)n Simple_repeat Simple_repeat 2 40 0 2150 99 0 3 chr9 103319383 103319696 -14542931 - AluSx SINE Alu 0 312 1 238 323 105 32 chr9 103320125 103320249 -14542378 + L2 LINE L2 3180 3312 -1 2197 128 0 3 chr9 103321742 103322055 -14540572 + AluSx SINE Alu 1 312 0 194 282 87 29 chr9 103322299 103322402 -14540225 + MIR SINE MIR 110 218 -44 29 0 0 0 chr9 103322489 103322518 -14540109 + AT_rich Low_complexity Low_complexity 1 29 0 255 339 85 18 chr9 103322564 103322729 -14539898 - MIR SINE MIR -36 226 51 254 275 152 36 chr9 103322976 103323114 -14539513 - MIR SINE MIR -88 174 21 2186 126 0 19 chr9 103323373 103323682 -14538945 + AluSx SINE Alu 1 303 -9 289 286 208 7 chr9 103324419 103324573 -14538054 - MIR3 SINE MIR -8 200 16 1878 146 29 4 chr9 103324869 103325144 -14537483 - AluJo SINE Alu -30 282 1 351 0 0 0 chr9 103326100 103326139 -14536488 + (TG)n Simple_repeat Simple_repeat 2 40 0 361 176 68 0 chr9 103327887 103327961 -14534666 + L1PA11 LINE L1 6096 6174 0 273 286 150 36 chr9 103328434 103328574 -14534053 - MIR SINE MIR -86 176 21 240 284 40 0 chr9 103329835 103329909 -14532718 - MIR SINE MIR 0 262 186 280 267 53 0 chr9 103330141 103330216 -14532411 + L2 LINE L2 3148 3226 -46 529 239 12 120 chr9 103331395 103331498 -14531129 + L1ME1 LINE L1 4398 4511 -1635 2364 91 0 3 chr9 103331498 103331796 -14530831 + AluY SINE Alu 1 297 -14 529 239 12 120 chr9 103331796 103331870 -14530757 + L1ME1 LINE L1 4511 4591 -1555 2361 96 3 6 chr9 103331870 103332184 -14530443 + AluSp SINE Alu 1 313 0 529 239 12 120 chr9 103332184 103332438 -14530189 + L1ME1 LINE L1 4591 4799 -1347 12182 85 9 3 chr9 103332446 103334940 -14527687 + L1PA7 LINE L1 3645 6153 -1 2624 208 67 31 chr9 103334948 103336361 -14526266 + L1ME1 LINE L1 4698 6163 -3 632 245 170 9 chr9 103336440 103336652 -14525975 + MIR SINE MIR 15 260 -2 2330 83 3 3 chr9 103336654 103336954 -14525673 - AluSp SINE Alu -13 300 1 1959 161 0 23 chr9 103336956 103337260 -14525367 - AluJo SINE Alu -15 297 1 272 154 13 39 chr9 103337261 103337339 -14525288 - HAL1 LINE L1 -1419 1088 1013 2161 119 0 7 chr9 103337344 103337639 -14524988 - AluSg SINE Alu -17 293 1 978 178 11 42 chr9 103337649 103337840 -14524787 - AluJo SINE Alu -22 290 106 1090 181 68 60 chr9 103338037 103338216 -14524411 - L1M4 LINE L1 -1415 4731 4555 2394 157 44 33 chr9 103338216 103338675 -14523952 - MLT2C2 LTR ERVL 0 464 1 1090 181 68 60 chr9 103338675 103338860 -14523767 - L1M4 LINE L1 -1591 4555 4364 588 238 35 0 chr9 103338885 103339057 -14523570 + L1ME1 LINE L1 4960 5137 -1009 3748 246 69 36 chr9 103339065 103340857 -14521770 + L1M3e LINE L1 7 2748 -4358 1761 143 59 25 chr9 103340857 103341143 -14521484 - AluSx SINE Alu -16 296 1 3748 246 69 36 chr9 103341143 103341498 -14521129 + L1M3e LINE L1 2748 3090 -4016 1366 217 23 23 chr9 103341499 103341844 -14520783 + L1ME1 LINE L1 5812 6156 -10 586 308 133 78 chr9 103341875 103342558 -14520069 + L1MEd LINE L1 7 727 -5392 348 366 17 29 chr9 103342655 103342830 -14519797 + L1MEd LINE L1 947 1119 -5000 203 280 0 0 chr9 103343001 103343051 -14519576 - L2 LINE L2 -1 3312 3263 1991 145 14 0 chr9 103345132 103345453 -14517174 + AluSx SINE Alu 1 325 0 2194 133 0 0 chr9 103345459 103345767 -14516860 + AluSq SINE Alu 1 308 -5 362 296 132 7 chr9 103345785 103345937 -14516690 - MIR SINE MIR -61 201 31 233 280 85 0 chr9 103346253 103346371 -14516256 - L1ME LINE L1 -195 5926 5799 350 297 164 0 chr9 103346379 103346598 -14516029 - L1ME LINE L1 -349 5772 5518 1089 126 5 107 chr9 103346848 103347054 -14515573 - AluSq SINE Alu -128 185 1 320 194 0 0 chr9 103347112 103347186 -14515441 - AluJ/FLAM SINE Alu -244 58 1 2044 118 84 62 chr9 103347198 103347518 -14515109 + Tigger2 DNA MER2_type 2294 2627 -91 2093 132 3 7 chr9 103347518 103347822 -14514805 - AluSp SINE Alu -10 303 1 2044 118 84 62 chr9 103347822 103347917 -14514710 + Tigger2 DNA MER2_type 2627 2718 0 180 0 0 0 chr9 103349587 103349607 -14513020 + (A)n Simple_repeat Simple_repeat 1 20 0 244 242 142 33 chr9 103349727 103349847 -14512780 - MIR SINE MIR -102 160 28 364 319 38 38 chr9 103349934 103350119 -14512508 - MIR SINE MIR -26 236 52 25 31 0 0 chr9 103350352 103350384 -14512243 + AT_rich Low_complexity Low_complexity 1 32 0 2287 86 3 3 chr9 103350410 103350712 -14511915 - AluY SINE Alu -9 302 1 1857 146 0 0 chr9 103351051 103351312 -14511315 - AluSx SINE Alu -27 285 25 321 243 118 44 chr9 103352805 103352941 -14509686 + MIR SINE MIR 45 190 -72 218 228 76 63 chr9 103353547 103353626 -14509001 - MIR3 SINE MIR -8 200 121 24 32 0 0 chr9 103355630 103355661 -14506966 + AT_rich Low_complexity Low_complexity 1 31 0 808 259 7 49 chr9 103355992 103356297 -14506330 - AluJb SINE Alu -9 293 2 235 274 0 0 chr9 103356329 103356380 -14506247 - MIR SINE MIR -165 97 47 186 43 0 0 chr9 103357462 103357485 -14505142 + (A)n Simple_repeat Simple_repeat 1 23 0 195 341 143 0 chr9 103357735 103357861 -14504766 + MIR SINE MIR 119 262 0 22 0 0 0 chr9 103358536 103358558 -14504069 + AT_rich Low_complexity Low_complexity 1 22 0 388 322 45 40 chr9 103358751 103358953 -14503674 - MIR SINE MIR -10 252 50 197 308 116 55 chr9 103359694 103359840 -14502787 - MIR SINE MIR -62 200 46 457 301 20 20 chr9 103359924 103360070 -14502557 + MIR SINE MIR 8 153 -109 311 149 45 0 chr9 103360132 103360199 -14502428 + (TATATG)n Simple_repeat Simple_repeat 3 72 0 200 352 65 0 chr9 103362281 103362389 -14500238 + MIR SINE MIR 129 243 -19 186 196 36 18 chr9 103362394 103362450 -14500177 + L2 LINE L2 3178 3234 -38 287 325 120 75 chr9 103363233 103363525 -14499102 - L2 LINE L2 -1 3271 2967 * 331 352 104 21 chr9 103363522 103363809 -14498818 - L2 LINE L2 -706 2608 2298 233 365 213 14 chr9 103363835 103364117 -14498510 - L2 LINE L2 0 3272 2935 247 95 71 0 chr9 103364225 103364267 -14498360 + U7 snRNA snRNA 2 46 -17 1577 207 101 7 chr9 103364289 103364733 -14497894 + L1MB4 LINE L1 3343 3828 -2318 4854 210 43 29 chr9 103365695 103366743 -14495884 + L1MB4 LINE L1 3812 4844 -1336 2030 146 0 3 chr9 103366743 103367044 -14495583 + AluSx SINE Alu 1 300 -12 4854 210 43 29 chr9 103367044 103367189 -14495438 + L1MB4 LINE L1 4844 4986 -1194 1619 202 16 32 chr9 103367189 103367501 -14495126 + AluJb SINE Alu 1 307 -5 4854 210 43 29 chr9 103367501 103367553 -14495074 + L1MB4 LINE L1 4986 5036 -1144 186 43 0 0 chr9 103367553 103367576 -14495051 + (CAAA)n Simple_repeat Simple_repeat 3 25 0 4854 210 43 29 chr9 103367576 103368674 -14493953 + L1MB4 LINE L1 5036 6162 -18 24 0 0 0 chr9 103368770 103368794 -14493833 + AT_rich Low_complexity Low_complexity 1 24 0 520 240 25 0 chr9 103368824 103368945 -14493682 - FLAM_C SINE Alu -19 124 1 309 260 290 0 chr9 103369069 103369169 -14493458 + MER5A DNA MER1_type 61 189 0 2239 117 0 13 chr9 103369199 103369516 -14493111 - AluSq SINE Alu 0 313 1 435 319 120 37 chr9 103369516 103369732 -14492895 + MIR SINE MIR 20 253 -9 217 161 0 71 chr9 103369802 103369858 -14492769 - L2 LINE L2 -4 3268 3217 186 282 47 47 chr9 103370037 103370122 -14492505 - L2 LINE L2 -158 3114 3030 355 258 0 0 chr9 103370502 103370599 -14492028 - L1ME LINE L1 -449 5672 5576 476 257 19 9 chr9 103370668 103370773 -14491854 - L2 LINE L2 -36 3277 3172 478 150 88 0 chr9 103370779 103370859 -14491768 + Tigger4(Zombi) DNA MER2_type 1 87 -2644 281 130 0 0 chr9 103370856 103370902 -14491725 + Tigger4(Zombi) DNA MER2_type 2295 2340 -391 * 2140 97 3 3 chr9 103370903 103371192 -14491435 + AluSx SINE Alu 1 289 -23 2015 112 28 0 chr9 103371212 103371497 -14491130 + AluSx SINE Alu 1 293 -19 2195 90 64 36 chr9 103371513 103371729 -14490898 + Tigger4(Zombi) DNA MER2_type 2333 2566 -165 2064 141 0 0 chr9 103371729 103372020 -14490607 + AluSx SINE Alu 6 296 -16 2195 90 64 36 chr9 103372020 103372191 -14490436 + Tigger4(Zombi) DNA MER2_type 2566 2731 0 2614 258 232 22 chr9 103372192 103373073 -14489554 - L2 LINE L2 -157 3156 2461 2377 120 11 22 chr9 103373073 103373441 -14489186 - THE1B LTR MaLR 0 364 1 2614 258 232 22 chr9 103373441 103374160 -14488467 - L2 LINE L2 -852 2461 1216 315 0 0 0 chr9 103374260 103374295 -14488332 + (TG)n Simple_repeat Simple_repeat 2 36 0 194 345 0 17 chr9 103374432 103374490 -14488137 + MIR3 SINE MIR 9 65 -143 2342 61 7 14 chr9 103374503 103374800 -14487827 - AluY SINE Alu -16 295 1 237 257 42 56 chr9 103374803 103374816 -14487811 + L1ME LINE L1 5706 5718 -403 1666 114 86 81 chr9 103374816 103374906 -14487721 - MER46B DNA MER2_type -2495 236 148 468 51 0 0 chr9 103374906 103374965 -14487662 + (CA)n Simple_repeat Simple_repeat 2 60 0 1666 114 86 81 chr9 103374965 103375233 -14487394 - MER46B DNA MER2_type -2583 148 1 237 257 42 56 chr9 103375233 103375345 -14487282 + L1ME LINE L1 5718 5831 -290 795 223 27 0 chr9 103375345 103375529 -14487098 + MER5A DNA MER1_type 1 189 0 237 257 42 56 chr9 103375529 103375546 -14487081 + L1ME LINE L1 5831 5847 -274 1947 131 3 45 chr9 103375920 103376233 -14486394 - AluSx SINE Alu -12 300 1 25 90 0 0 chr9 103376274 103376341 -14486286 + AT_rich Low_complexity Low_complexity 1 67 0 616 294 145 14 chr9 103376616 103377058 -14485569 + MLT1H1 LTR MaLR 32 531 -24 21 0 0 0 chr9 103377077 103377098 -14485529 + AT_rich Low_complexity Low_complexity 1 21 0 329 273 96 48 chr9 103377451 103377638 -14484989 - L1M4 LINE L1 -2610 3536 3341 188 377 0 0 chr9 103378950 103379011 -14483616 + L3b LINE CR1 1455 1515 -68 485 270 99 9 chr9 103379042 103379264 -14483363 + MER112 DNA MER1_type 3 244 -16 202 176 0 0 chr9 103379388 103379422 -14483205 - MIR SINE MIR -73 189 156 639 315 90 61 chr9 103379436 103380384 -14482243 - L2 LINE L2 0 3272 2292 214 250 0 0 chr9 103380514 103380554 -14482073 - L2 LINE L2 -11 3261 3222 448 240 122 14 chr9 103381446 103381667 -14480960 - HsTC2b DNA Tc2 0 920 676 207 100 0 0 chr9 103381713 103381743 -14480884 + (A)n Simple_repeat Simple_repeat 1 30 0 1182 223 121 12 chr9 103381744 103382067 -14480560 - HsTC2b DNA Tc2 -543 372 15 603 246 46 74 chr9 103382258 103382542 -14480085 + MLT1I LTR MaLR 116 391 -18 1214 190 4 4 chr9 103382603 103382829 -14479798 + AluJb SINE Alu 86 311 -1 212 0 36 0 chr9 103383784 103383812 -14478815 + (TA)n Simple_repeat Simple_repeat 2 30 0 561 133 0 67 chr9 103383812 103383917 -14478710 + AluJb SINE Alu 186 283 -29 392 306 117 24 chr9 103384357 103384563 -14478064 + L1ME3A LINE L1 785 1009 -5387 565 282 38 41 chr9 103384644 103385198 -14477429 + L1ME3A LINE L1 1019 1622 -4634 183 80 0 0 chr9 103385840 103385865 -14476762 + (CAA)n Simple_repeat Simple_repeat 3 27 0 744 295 64 8 chr9 103386053 103386429 -14476198 + L1ME3A LINE L1 3497 3893 -2322 1352 193 67 50 chr9 103386478 103386897 -14475730 + L1ME2 LINE L1 5739 6164 0 1211 271 83 40 chr9 103386905 103386977 -14475650 + L1ME3A LINE L1 4081 4148 -2067 2382 92 3 6 chr9 103386977 103387291 -14475336 + AluSq SINE Alu 1 313 0 1211 271 83 40 chr9 103387291 103388114 -14474513 + L1ME3A LINE L1 4148 5014 -1201 2038 105 0 0 chr9 103388117 103388384 -14474243 + AluSx SINE Alu 26 292 -20 728 97 48 0 chr9 103388391 103388515 -14474112 + L1MA7 LINE L1 6160 6289 -2 1697 238 63 77 chr9 103388625 103389247 -14473380 + L1ME3A LINE L1 5419 6029 -210 1217 208 92 41 chr9 103389247 103389540 -14473087 + AluJo SINE Alu 1 308 -4 1697 238 63 77 chr9 103389540 103389721 -14472906 + L1ME3A LINE L1 6029 6211 -28 2110 106 14 0 chr9 103390170 103390453 -14472174 + AluSc SINE Alu 1 287 -22 647 203 79 11 chr9 103390669 103390846 -14471781 - MIR SINE MIR -9 253 65 300 200 15 0 chr9 103391671 103391736 -14470891 + AluSp/q SINE Alu 217 282 -21 600 193 193 54 chr9 103391802 103391896 -14470731 - MER5A DNA MER1_type 0 189 109 1647 149 8 4 chr9 103391896 103392144 -14470483 - AluJo SINE Alu -14 298 50 600 193 193 54 chr9 103392144 103392215 -14470412 - MER5A DNA MER1_type -80 109 1 268 263 331 0 chr9 103392840 103392973 -14469654 + MIR3 SINE MIR 30 206 -2 1773 134 7 14 chr9 103393209 103393484 -14469143 - AluSx SINE Alu -39 273 1 944 132 0 7 chr9 103393941 103394085 -14468542 + FLAM_C SINE Alu 1 143 0 705 169 103 0 chr9 103394086 103394222 -14468405 + MER30 DNA MER1_type 81 230 0 2391 90 0 0 chr9 103394270 103394569 -14468058 - AluSq SINE Alu -14 299 1 310 280 72 92 chr9 103394772 103394979 -14467648 + L1MC/D LINE L1 5439 5641 -2167 2332 94 0 0 chr9 103394988 103395287 -14467340 + AluY SINE Alu 1 299 -12 764 197 7 7 chr9 103395410 103395552 -14467075 - Tigger3(Golem) DNA MER2_type -1 3028 2887 272 291 46 75 chr9 103395689 103396078 -14466549 - L1ME3A LINE L1 -214 5956 5579 339 333 63 39 chr9 103396082 103396289 -14466338 - L1ME3A LINE L1 -633 5531 5320 342 271 112 83 chr9 103396304 103396475 -14466152 - L1ME3A LINE L1 -863 5283 5097 1669 155 10 44 chr9 103396475 103396772 -14465855 - AluJo SINE Alu -25 287 1 342 271 112 83 chr9 103396772 103396914 -14465713 - L1ME3A LINE L1 -1049 5097 4961 24 32 0 0 chr9 103399152 103399183 -14463444 + AT_rich Low_complexity Low_complexity 1 31 0 1714 155 3 30 chr9 103399510 103399814 -14462813 - AluJb SINE Alu -16 296 1 324 302 0 28 chr9 103399829 103399935 -14462692 - MIR SINE MIR -152 110 8 271 308 47 9 chr9 103400940 103401047 -14461580 - MARNA DNA Mariner -12 574 464 276 292 29 22 chr9 103401116 103401253 -14461374 + L1ME LINE L1 5523 5660 -461 2174 114 7 0 chr9 103401256 103401555 -14461072 + AluSx SINE Alu 1 301 -11 389 178 14 0 chr9 103401725 103401798 -14460829 - AluJ/FLAM SINE Alu -228 74 1 395 293 32 16 chr9 103401801 103401989 -14460638 + L1MEd LINE L1 1041 1231 -4974 2214 129 3 0 chr9 103402310 103402621 -14460006 + AluSx SINE Alu 1 312 0 252 0 0 0 chr9 103402886 103402914 -14459713 + (A)n Simple_repeat Simple_repeat 1 28 0 12321 122 61 43 chr9 103402914 103405230 -14457397 + Tigger1 DNA MER2_type 61 2418 0 1119 252 0 0 chr9 103405230 103405460 -14457167 + MIR SINE MIR 12 241 -21 318 248 60 45 chr9 103405531 103405664 -14456963 + L1MEd LINE L1 2109 2243 -4153 1238 181 78 40 chr9 103405728 103406076 -14456551 - L1ME1 LINE L1 -48 6118 5758 230 256 11 33 chr9 103406384 103406474 -14456153 + MLT1-int LTR MaLR 795 882 -489 2212 125 0 10 chr9 103407563 103407875 -14454752 - AluSg SINE Alu -1 309 1 21 0 0 0 chr9 103407875 103407896 -14454731 + AT_rich Low_complexity Low_complexity 1 21 0 736 216 55 17 chr9 103408141 103408322 -14454305 - MER5A DNA MER1_type 0 189 2 541 221 103 103 chr9 103409005 103409057 -14453570 - MIR SINE MIR -66 196 145 2462 78 0 3 chr9 103409057 103409363 -14453264 + AluY SINE Alu 1 305 -6 541 221 103 103 chr9 103409363 103409505 -14453122 - MIR SINE MIR -116 146 2 838 246 31 23 chr9 103409658 103409914 -14452713 + AluJo SINE Alu 1 258 -54 456 270 8 0 chr9 103409910 103410036 -14452591 + AluY SINE Alu 156 282 -29 * 323 237 173 13 chr9 103410085 103410241 -14452386 + L1MC4 LINE L1 7647 7827 -215 2095 123 0 0 chr9 103410438 103410730 -14451897 + AluSx SINE Alu 6 297 -15 223 171 0 92 chr9 103411409 103411465 -14451162 + A-rich Low_complexity Low_complexity 2 51 -19 2321 109 3 0 chr9 103411465 103411769 -14450858 + AluSx SINE Alu 1 305 -7 223 171 0 92 chr9 103411769 103411788 -14450839 + A-rich Low_complexity Low_complexity 51 70 0 374 357 65 32 chr9 103412408 103412810 -14449817 - L2 LINE L2 -212 3060 2625 2348 82 3 0 chr9 103412810 103413104 -14449523 + AluSp SINE Alu 3 297 -16 374 357 65 32 chr9 103413104 103413168 -14449459 - L2 LINE L2 -647 2625 2565 1065 237 35 34 chr9 103413911 103414458 -14448169 + L1MC4 LINE L1 6452 6912 -896 1915 205 119 44 chr9 103414459 103414830 -14447797 + L1MC4 LINE L1 7238 7677 -365 2601 58 0 0 chr9 103414830 103415141 -14447486 + AluY SINE Alu 1 311 0 1915 205 119 44 chr9 103415141 103415399 -14447228 + L1MC4 LINE L1 7677 7914 -128 234 341 152 0 chr9 103415485 103415617 -14447010 - L2 LINE L2 -815 2499 2348 359 301 78 0 chr9 103416496 103416599 -14446028 - MIR SINE MIR -62 146 36 209 205 0 0 chr9 103416605 103416644 -14445983 + (TTCA)n Simple_repeat Simple_repeat 4 42 0 403 351 76 18 chr9 103416894 103417170 -14445457 - L2 LINE L2 -452 2862 2571 220 226 35 148 chr9 103418140 103418255 -14444372 - L3 LINE CR1 -17 1560 1459 22 0 0 0 chr9 103418792 103418814 -14443813 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr9 103419142 103419168 -14443459 + AT_rich Low_complexity Low_complexity 1 26 0 497 287 58 23 chr9 103421193 103421367 -14441260 - MIR SINE MIR -36 226 47 600 227 17 0 chr9 103421907 103422026 -14440601 - L2 LINE L2 0 3313 3193 567 237 30 98 chr9 103422693 103422929 -14439698 - MIR SINE MIR -28 234 15 443 330 95 23 chr9 103423735 103423956 -14438671 - MIR SINE MIR -20 242 6 1509 305 44 19 chr9 103424640 103425213 -14437414 + MLT1K LTR MaLR 2 588 0 321 240 224 0 chr9 103425476 103425601 -14437026 - MIR SINE MIR 0 262 110 207 228 211 0 chr9 103426198 103426255 -14436372 + MIR SINE MIR 37 105 -157 365 245 69 10 chr9 103426267 103426369 -14436258 - L2 LINE L2 -4 3309 3202 1898 136 29 39 chr9 103426771 103427080 -14435547 + AluJb SINE Alu 1 306 -6 1191 133 0 0 chr9 103427323 103427489 -14435138 - AluSg/x SINE Alu -13 299 134 2376 97 0 0 chr9 103427489 103427787 -14434840 - AluSc SINE Alu -11 298 1 383 251 204 0 chr9 103427802 103427969 -14434658 + MIR SINE MIR 59 259 -3 1724 183 3 3 chr9 103428152 103428436 -14434191 - AluJb SINE Alu -28 284 1 232 217 50 0 chr9 103429330 103429390 -14433237 + L1ME LINE L1 5683 5745 -376 2322 102 0 0 chr9 103430800 103431093 -14431534 - AluSg SINE Alu -17 293 1 720 183 15 0 chr9 103431120 103431251 -14431376 + FLAM_C SINE Alu 1 133 -10 299 285 140 13 chr9 103431307 103431535 -14431092 + L1ME3A LINE L1 5124 5380 -766 788 179 7 0 chr9 103431557 103431697 -14430930 + FRAM SINE Alu 25 165 -11 964 275 129 15 chr9 103431707 103432227 -14430400 + L1ME3A LINE L1 5371 5949 -221 1292 274 25 33 chr9 103432358 103432972 -14429655 - MER115 DNA AcHobo 0 693 21 1547 235 58 76 chr9 103433088 103433730 -14428897 + L1MC4 LINE L1 7382 8011 -31 3119 115 78 0 chr9 103433750 103434253 -14428374 + L1PB4 LINE L1 5615 6156 0 2234 94 3 16 chr9 103434257 103434565 -14428062 + AluSg SINE Alu 1 304 -6 2157 124 7 0 chr9 103434594 103434900 -14427727 + AluSq SINE Alu 1 308 -5 1708 77 5 0 chr9 103435061 103435270 -14427357 + AluSp SINE Alu 88 297 -16 243 318 47 98 chr9 103436120 103436303 -14426324 + MIR SINE MIR 15 206 -56 1970 157 0 0 chr9 103436303 103436590 -14426037 + AluJo SINE Alu 1 287 -25 243 318 47 98 chr9 103436590 103436606 -14426021 + MIR SINE MIR 206 221 -41 189 0 0 0 chr9 103436606 103436627 -14426000 + (CA)n Simple_repeat Simple_repeat 2 22 0 243 318 47 98 chr9 103436627 103436662 -14425965 + MIR SINE MIR 221 238 -24 2061 101 47 4 chr9 103437075 103437353 -14425274 - AluSx SINE Alu -22 290 1 269 289 41 50 chr9 103437681 103437802 -14424825 - MIR SINE MIR -66 196 77 281 261 130 31 chr9 103437835 103437996 -14424631 + MER104 DNA Tc2 4 180 0 22 70 0 0 chr9 103438650 103438693 -14423934 + AT_rich Low_complexity Low_complexity 1 43 0 2464 234 147 31 chr9 103438804 103439268 -14423359 + L2 LINE L2 1790 2199 -1115 655 192 64 0 chr9 103439268 103439393 -14423234 + FLAM_A SINE Alu 1 133 0 2464 234 147 31 chr9 103439393 103439818 -14422809 + L2 LINE L2 2199 2782 -532 450 240 40 0 chr9 103439821 103439946 -14422681 + L1MB3 LINE L1 6054 6183 0 695 287 95 16 chr9 103439969 103440408 -14422219 + L2 LINE L2 2780 3271 -1 704 201 122 6 chr9 103440475 103440639 -14421988 - MER5A DNA MER1_type -4 185 3 554 249 154 9 chr9 103441698 103441919 -14420708 - MIR SINE MIR -9 253 1 411 118 0 0 chr9 103442050 103442126 -14420501 + (CA)n Simple_repeat Simple_repeat 1 76 0 775 172 113 0 chr9 103442204 103442355 -14420272 + MER5B DNA MER1_type 11 178 0 263 206 320 0 chr9 103442382 103442479 -14420148 + L2 LINE L2 3141 3268 -4 2083 122 14 0 chr9 103442834 103443130 -14419497 - AluSx SINE Alu -12 300 1 1868 218 163 6 chr9 103444914 103445992 -14416635 + L1MC4 LINE L1 6546 7699 -109 459 0 0 0 chr9 103446009 103446060 -14416567 + (TG)n Simple_repeat Simple_repeat 2 52 0 361 285 97 27 chr9 103446197 103446392 -14416235 + MIR SINE MIR 9 212 -50 2196 114 0 3 chr9 103446743 103447042 -14415585 + AluSq SINE Alu 1 298 -15 1088 238 17 17 chr9 103447622 103447857 -14414770 - MIR SINE MIR -10 252 18 337 261 0 0 chr9 103447918 103448006 -14414621 - L1ME2 LINE L1 -18 6146 6059 303 326 111 15 chr9 103448419 103448554 -14414073 - MER5A DNA MER1_type -30 159 12 21 0 0 0 chr9 103448679 103448700 -14413927 + AT_rich Low_complexity Low_complexity 1 21 0 2124 242 19 47 chr9 103448788 103449474 -14413153 + L1MEc LINE L1 46 712 -5684 499 190 74 8 chr9 103449471 103449592 -14413035 + L1MEc LINE L1 102 230 -6166 * 1002 133 0 18 chr9 103449626 103449779 -14412848 + L1PA8 LINE L1 6010 6161 -11 1995 130 0 0 chr9 103449779 103450064 -14412563 + AluSx SINE Alu 28 312 0 1002 133 0 18 chr9 103450064 103450076 -14412551 + L1PA8 LINE L1 6161 6172 0 633 236 96 6 chr9 103450207 103450364 -14412263 - MIR SINE MIR -87 175 5 479 311 43 24 chr9 103450653 103450862 -14411765 - MIR SINE MIR -35 227 15 357 197 0 0 chr9 103450919 103450980 -14411647 + L2 LINE L2 3252 3312 -1 305 266 53 21 chr9 103451149 103451243 -14411384 + L2 LINE L2 3175 3271 -1 934 203 0 0 chr9 103452112 103452275 -14410352 - FAM SINE Alu -12 173 11 2229 135 0 3 chr9 103452391 103452703 -14409924 + AluSx SINE Alu 1 311 -1 1304 172 66 51 chr9 103453086 103453359 -14409268 + AluJo SINE Alu 1 277 -35 213 65 0 0 chr9 103453363 103453394 -14409233 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 580 302 75 22 chr9 103453394 103453847 -14408780 + L1MEc LINE L1 624 1100 -5105 1425 181 105 0 chr9 103454739 103455015 -14407612 + AluJo SINE Alu 1 305 -7 26 0 0 0 chr9 103455062 103455088 -14407539 + AT_rich Low_complexity Low_complexity 1 26 0 778 164 92 80 chr9 103455155 103455377 -14407250 - L1ME LINE L1 -684 5482 5270 1703 173 34 0 chr9 103455377 103455672 -14406955 - AluJo SINE Alu -7 305 1 778 164 92 80 chr9 103455672 103455857 -14406770 - L1ME LINE L1 -896 5270 5089 215 196 0 22 chr9 103456206 103456252 -14406375 - L2 LINE L2 -11 3261 3217 407 357 98 38 chr9 103457343 103457609 -14405018 - L2 LINE L2 -6 3266 2985 395 283 168 12 chr9 103457672 103457845 -14404782 + MIR SINE MIR 7 206 -56 501 191 61 23 chr9 103457858 103457989 -14404638 + MIR SINE MIR 71 206 -56 672 304 37 4 chr9 103458109 103458352 -14404275 - L2 LINE L2 -508 2806 2556 2210 90 0 7 chr9 103458795 103459085 -14403542 + AluY SINE Alu 21 308 -3 471 35 0 0 chr9 103459214 103459271 -14403356 + (CA)n Simple_repeat Simple_repeat 1 57 0 664 222 54 21 chr9 103459876 103460103 -14402524 + L1ME3 LINE L1 3641 3878 -2268 2826 13 0 0 chr9 103460103 103460411 -14402216 + AluYa5 SINE Alu 1 308 -3 664 222 54 21 chr9 103460411 103460422 -14402205 + L1ME3 LINE L1 3878 3887 -2259 40381 34 26 2 chr9 103460423 103466418 -14396209 + L1PA2 LINE L1 13 6155 0 226 42 125 0 chr9 103466426 103466474 -14396153 + A-rich Low_complexity Low_complexity 2 55 0 2872 231 85 27 chr9 103466481 103467710 -14394917 + L1ME3 LINE L1 3876 5221 -941 1956 141 0 10 chr9 103467710 103468015 -14394612 + AluSx SINE Alu 1 302 -10 2872 231 85 27 chr9 103468015 103468562 -14394065 + L1ME3 LINE L1 5221 5735 -427 1448 223 32 20 chr9 103468565 103468741 -14393886 + L1ME3 LINE L1 5800 5972 -190 2248 69 7 13 chr9 103468741 103469046 -14393581 - AluY SINE Alu -8 303 1 1448 223 32 20 chr9 103469046 103469214 -14393413 + L1ME3 LINE L1 5972 6148 -14 3142 224 81 31 chr9 103469275 103470174 -14392453 + L1MDa LINE L1 76 1019 -5521 506 263 44 70 chr9 103470191 103470461 -14392166 + HAL1 LINE L1 1548 1810 -697 2231 71 27 3 chr9 103470676 103470970 -14391657 + AluSp SINE Alu 1 301 -12 2333 124 54 56 chr9 103471254 103471310 -14391317 - MSTB LTR MaLR 0 426 371 2268 77 0 23 chr9 103471310 103471620 -14391007 + AluY SINE Alu 2 304 -7 2333 124 54 56 chr9 103471620 103471990 -14390637 - MSTB LTR MaLR -55 371 1 428 297 92 54 chr9 103472566 103472900 -14389727 + HAL1b LINE L1 752 2495 -12 2645 237 100 87 chr9 103472912 103473424 -14389203 + L1MC5 LINE L1 5460 5964 -1997 2353 80 0 0 chr9 103473424 103473725 -14388902 - AluSp SINE Alu -12 301 1 2645 237 100 87 chr9 103473725 103473960 -14388667 + L1MC5 LINE L1 5964 6195 -1766 1767 160 20 0 chr9 103473960 103474266 -14388361 + AluSx SINE Alu 1 312 0 2645 237 100 87 chr9 103474266 103474881 -14387746 + L1MC5 LINE L1 6195 6801 -1160 2136 94 0 14 chr9 103474881 103475204 -14387423 + AluY SINE Alu 1 311 0 2645 237 100 87 chr9 103475204 103475259 -14387368 + L1MC5 LINE L1 6801 6854 -1107 2428 66 0 0 chr9 103475259 103475564 -14387063 + AluY SINE Alu 1 305 -6 2645 237 100 87 chr9 103475564 103476242 -14386385 + L1MC5 LINE L1 6854 7522 -439 2066 133 0 0 chr9 103476242 103476542 -14386085 + AluSx SINE Alu 1 300 -12 2645 237 100 87 chr9 103476542 103476652 -14385975 + L1MC5 LINE L1 7522 7629 -332 2091 128 0 0 chr9 103476652 103476956 -14385671 + AluSx SINE Alu 1 304 -8 2645 237 100 87 chr9 103476956 103477149 -14385478 + L1MC5 LINE L1 7629 7930 -31 1886 128 10 3 chr9 103477201 103477498 -14385129 + AluSq SINE Alu 1 299 -14 22 56 0 0 chr9 103477538 103477574 -14385053 + AT_rich Low_complexity Low_complexity 1 36 0 1819 150 0 42 chr9 103477618 103477925 -14384702 - AluSx SINE Alu -18 294 1 242 321 64 36 chr9 103478869 103478965 -14383662 + L2 LINE L2 2448 2551 -763 1887 140 0 37 chr9 103478965 103479286 -14383341 - AluJb SINE Alu -3 309 1 242 321 64 36 chr9 103479286 103479329 -14383298 + L2 LINE L2 2551 2591 -723 257 276 20 31 chr9 103479580 103479678 -14382949 + L2 LINE L2 2668 2764 -550 187 300 0 0 chr9 103479756 103479806 -14382821 + L2 LINE L2 2927 2976 -338 2683 166 82 21 chr9 103480893 103481439 -14381188 + L1MB7 LINE L1 5551 6135 -49 1825 108 65 0 chr9 103481439 103481716 -14380911 + AluSg SINE Alu 1 295 -15 2683 166 82 21 chr9 103481716 103481743 -14380884 + L1MB7 LINE L1 6135 6159 -25 887 277 119 17 chr9 103481801 103482244 -14380383 + L2 LINE L2 2785 3277 -36 211 0 88 0 chr9 103482520 103482554 -14380073 + T-rich Low_complexity Low_complexity 1 37 0 253 200 0 0 chr9 103482632 103482677 -14379950 + L2 LINE L2 3190 3234 -38 1967 113 7 19 chr9 103483333 103483643 -14378984 + AluSp SINE Alu 1 306 -7 249 339 89 55 chr9 103483802 103484038 -14378589 - L2 LINE L2 -4 3268 3025 235 353 25 8 chr9 103484101 103484220 -14378407 + MIR SINE MIR 124 244 -18 369 328 134 10 chr9 103484525 103484726 -14377901 - MIR SINE MIR -3 259 34 233 271 57 0 chr9 103485302 103485372 -14377255 + MIR SINE MIR 43 116 -146 22 70 0 0 chr9 103486732 103486775 -14375852 + GC_rich Low_complexity Low_complexity 1 43 0 217 115 19 19 chr9 103486881 103486933 -14375694 + (CCCGG)n Simple_repeat Simple_repeat 4 55 0 28 61 0 0 chr9 103486977 103487026 -14375601 + GC_rich Low_complexity Low_complexity 1 49 0 261 231 0 33 chr9 103487157 103487248 -14375379 + (CCG)n Simple_repeat Simple_repeat 2 89 0 24 53 0 0 chr9 103487278 103487316 -14375311 + GC_rich Low_complexity Low_complexity 1 38 0 357 281 214 22 chr9 103488024 103488202 -14374425 - MIR SINE MIR -19 243 32 192 77 0 0 chr9 103488273 103488299 -14374328 + (T)n Simple_repeat Simple_repeat 1 26 0 396 0 0 0 chr9 103488892 103488936 -14373691 + (TG)n Simple_repeat Simple_repeat 2 45 0 423 283 49 21 chr9 103488992 103489161 -14373466 + MIR3 SINE MIR 4 170 -63 1069 241 12 36 chr9 103489165 103489418 -14373209 + MIR SINE MIR 3 249 -13 21 0 0 0 chr9 103489460 103489481 -14373146 + AT_rich Low_complexity Low_complexity 1 21 0 1985 107 7 20 chr9 103489491 103489791 -14372836 + AluSx SINE Alu 1 296 -16 2237 82 0 13 chr9 103489791 103490094 -14372533 + AluY SINE Alu 1 299 -12 806 191 0 12 chr9 103490106 103490268 -14372359 + FAM SINE Alu 11 170 -15 346 281 134 82 chr9 103490299 103490362 -14372265 + MIR3 SINE MIR 21 79 -129 1563 260 52 42 chr9 103490362 103490866 -14371761 - MLT1J LTR MaLR 0 511 3 346 281 134 82 chr9 103490866 103490973 -14371654 + MIR3 SINE MIR 79 200 -8 342 136 0 15 chr9 103491423 103491489 -14371138 - L1MB8 LINE L1 -12 6166 6102 1976 91 20 40 chr9 103491507 103491804 -14370823 - AluSc SINE Alu -14 295 5 402 223 190 8 chr9 103491836 103491957 -14370670 + MIR SINE MIR 29 171 -91 291 385 39 0 chr9 103492017 103492147 -14370480 + L2 LINE L2 3177 3311 -2 5333 136 22 42 chr9 103492287 103493530 -14369097 - L1MB3 LINE L1 -2 6181 4961 2417 98 48 25 chr9 103493667 103494023 -14368604 - THE1B LTR MaLR 0 364 1 1508 161 0 27 chr9 103494125 103494386 -14368241 + AluJo SINE Alu 13 266 -46 387 0 0 0 chr9 103494393 103494436 -14368191 + (TAAAA)n Simple_repeat Simple_repeat 3 45 0 2042 120 0 0 chr9 103494797 103495109 -14367518 - AluSx SINE Alu 0 312 1 710 234 178 0 chr9 103495147 103495361 -14367266 + MIR SINE MIR 10 261 -1 306 319 69 28 chr9 103495446 103495590 -14367037 - MER5A DNA MER1_type -3 186 37 * 338 308 89 27 chr9 103495468 103495614 -14367013 + MER5A DNA MER1_type 35 189 0 229 255 98 69 chr9 103495923 103496025 -14366602 - L2 LINE L2 -7 3265 3161 2041 121 0 0 chr9 103496550 103496840 -14365787 - AluSx SINE Alu -20 292 3 375 43 0 0 chr9 103496948 103496995 -14365632 + MADE1 DNA Mariner 33 79 -1 227 266 96 11 chr9 103496996 103497090 -14365537 + MIR SINE MIR 160 261 -1 2056 108 0 14 chr9 103497445 103497761 -14364866 + AluSq SINE Alu 1 312 0 516 261 43 12 chr9 103497937 103498098 -14364529 + MIR SINE MIR 37 202 -60 248 344 0 22 chr9 103498187 103498277 -14364350 + MIR SINE MIR 2 89 -173 303 28 0 0 chr9 103498768 103498804 -14363823 + (TG)n Simple_repeat Simple_repeat 2 37 0 318 115 0 0 chr9 103498933 103498985 -14363642 + (CA)n Simple_repeat Simple_repeat 1 52 0 1961 141 0 10 chr9 103499046 103499351 -14363276 + AluSx SINE Alu 4 305 -7 201 39 0 0 chr9 103499354 103499380 -14363247 + (GAAA)n Simple_repeat Simple_repeat 4 29 0 251 256 188 92 chr9 103499537 103499744 -14362883 + MIR SINE MIR 4 230 -32 1461 184 0 26 chr9 103500475 103500746 -14361881 + AluJb SINE Alu 1 264 -48 34 0 0 0 chr9 103500749 103500783 -14361844 + AT_rich Low_complexity Low_complexity 1 34 0 1528 162 6 88 chr9 103500873 103501390 -14361237 + AluJo SINE Alu 1 312 0 347 288 86 59 chr9 103501465 103501597 -14361030 - L2 LINE L2 -6 3307 3165 3559 49 0 7 chr9 103501597 103502042 -14360585 + L1PA5 LINE L1 5712 6153 -1 347 288 86 59 chr9 103502042 103502131 -14360496 - L2 LINE L2 -148 3165 3080 427 235 50 0 chr9 103502173 103502292 -14360335 - MER39 LTR ERV1 0 707 583 2141 89 0 7 chr9 103502292 103502608 -14360019 + AluY SINE Alu 1 311 0 976 90 0 0 chr9 103502608 103502742 -14359885 + AluSc SINE Alu 132 265 -44 545 216 105 51 chr9 103502748 103503034 -14359593 - MER39 LTR ERV1 -178 529 1 183 182 45 0 chr9 103503319 103503363 -14359264 - L2 LINE L2 -292 2980 2935 506 67 13 0 chr9 103503471 103503546 -14359081 + (CA)n Simple_repeat Simple_repeat 1 76 0 1668 161 13 13 chr9 103503698 103504003 -14358624 + AluJb SINE Alu 1 305 -7 2185 105 0 7 chr9 103504024 103504330 -14358297 - AluSx SINE Alu -8 304 1 519 200 10 0 chr9 103504344 103504444 -14358183 - MIR SINE MIR -64 198 98 463 335 98 10 chr9 103504503 103504706 -14357921 - MIR SINE MIR -26 236 16 251 175 133 92 chr9 103504924 103504978 -14357649 + MIR SINE MIR 117 167 -95 1883 134 14 7 chr9 103504978 103505268 -14357359 + AluSx SINE Alu 1 292 -20 251 175 133 92 chr9 103505268 103505333 -14357294 + MIR SINE MIR 167 241 -21 507 291 12 17 chr9 103506055 103506227 -14356400 + L1ME LINE L1 5555 5725 -396 189 244 0 22 chr9 103506230 103506275 -14356352 - L2 LINE L2 -20 3293 3250 27 0 0 0 chr9 103506437 103506464 -14356163 + AT_rich Low_complexity Low_complexity 1 27 0 2075 116 0 3 chr9 103506464 103506756 -14355871 - AluSq SINE Alu -22 291 1 1460 167 35 14 chr9 103506799 103507086 -14355541 + AluJo SINE Alu 13 305 -7 508 183 0 0 chr9 103507145 103507238 -14355389 + L1MB5 LINE L1 5600 5692 -482 394 114 0 133 chr9 103507248 103507353 -14355274 - LTR9 LTR ERV1 -84 528 438 2628 145 28 28 chr9 103507353 103507437 -14355190 + L1MB5 LINE L1 5678 5761 -413 1822 164 0 3 chr9 103507437 103507741 -14354886 + AluJb SINE Alu 1 303 -9 2628 145 28 28 chr9 103507741 103508153 -14354474 + L1MB5 LINE L1 5760 6174 0 708 277 133 32 chr9 103508186 103508525 -14354102 - L2 LINE L2 -86 3227 2855 2090 107 7 7 chr9 103509086 103509386 -14353241 - AluSx SINE Alu -12 300 1 836 271 140 19 chr9 103509720 103510085 -14352542 + LTR33 LTR ERVL 113 521 0 250 365 95 15 chr9 103511041 103511178 -14351449 - L2 LINE L2 -4 3268 3121 2171 104 3 0 chr9 103511213 103511512 -14351115 + AluSx SINE Alu 1 300 -12 238 350 43 18 chr9 103511512 103511610 -14351017 + MIR SINE MIR 59 164 -98 878 178 61 17 chr9 103511610 103511790 -14350837 - MER5A DNA MER1_type 0 189 2 238 350 43 18 chr9 103511790 103511854 -14350773 + MIR SINE MIR 164 225 -37 347 263 86 40 chr9 103512057 103512209 -14350418 + MER112 DNA MER1_type 1 159 -101 557 221 103 103 chr9 103512474 103512526 -14350101 - MIR SINE MIR -66 196 145 2356 78 0 3 chr9 103512526 103512832 -14349795 + AluY SINE Alu 1 305 -6 557 221 103 103 chr9 103512832 103512974 -14349653 - MIR SINE MIR -116 146 2 1786 154 7 7 chr9 103513127 103513425 -14349202 + AluJo SINE Alu 1 298 -14 2097 106 0 3 chr9 103513442 103513735 -14348892 - AluSx SINE Alu -16 296 5 2094 109 0 3 chr9 103513762 103514056 -14348571 - AluSx SINE Alu -19 293 1 357 220 170 10 chr9 103514847 103514947 -14347680 + MIR SINE MIR 16 131 -131 1568 192 16 6 chr9 103514950 103515263 -14347364 + L1MD3 LINE L1 7669 7984 -11 1619 166 0 58 chr9 103515276 103515589 -14347038 + AluJo SINE Alu 1 295 -17 711 232 79 11 chr9 103515687 103515864 -14346763 - MIR SINE MIR -65 197 9 310 274 145 17 chr9 103515922 103516039 -14346588 + MIR3 SINE MIR 3 134 -74 525 247 89 17 chr9 103516190 103516383 -14346244 + MIR SINE MIR 47 250 -12 1011 309 18 21 chr9 103516398 103516786 -14345841 + MLT1I LTR MaLR 23 409 0 340 244 244 0 chr9 103516850 103516981 -14345646 - MIR SINE MIR -67 195 33 285 279 96 29 chr9 103517542 103517646 -14344981 - L2 LINE L2 0 3272 3162 186 310 0 31 chr9 103517647 103517721 -14344906 + MIR SINE MIR 2 75 -133 1640 126 159 7 chr9 103518349 103518620 -14344007 + AluSx SINE Alu 1 312 0 225 346 60 27 chr9 103518663 103518848 -14343779 + MIR SINE MIR 22 212 -50 * 576 294 147 5 chr9 103518822 103519040 -14343587 - MIR SINE MIR -2 260 12 209 225 88 38 chr9 103519466 103519546 -14343081 - MIR SINE MIR -46 216 133 2104 138 0 0 chr9 103519938 103520235 -14342392 - AluSx SINE Alu -3 309 13 2521 70 0 13 chr9 103520303 103520618 -14342009 - AluY SINE Alu 0 311 1 214 341 24 24 chr9 103520650 103520732 -14341895 - MIR SINE MIR -166 96 15 366 285 111 83 chr9 103520733 103520982 -14341645 + L1ME4a LINE L1 5687 5928 -193 2142 141 0 3 chr9 103520982 103521280 -14341347 + AluSx SINE Alu 1 297 -15 366 285 111 83 chr9 103521280 103521311 -14341316 + L1ME4a LINE L1 5928 5978 -143 2279 118 3 0 chr9 103521311 103521616 -14341011 + AluSp SINE Alu 1 306 -7 270 274 137 11 chr9 103522270 103522365 -14340262 + L3 LINE CR1 346 452 -1125 2146 69 4 29 chr9 103522604 103522879 -14339748 - AluSc SINE Alu -17 292 25 265 250 68 45 chr9 103522913 103523045 -14339582 + L2 LINE L2 2925 3059 -213 211 200 0 0 chr9 103523084 103523124 -14339503 + MIR SINE MIR 181 220 -42 749 276 73 11 chr9 103523126 103523401 -14339226 - MER46C DNA MER2_type -27 311 20 2111 124 7 16 chr9 103523529 103523836 -14338791 - AluJb SINE Alu -8 304 1 247 266 25 51 chr9 103523886 103523965 -14338662 - MIR SINE MIR -184 78 2 219 310 150 0 chr9 103524208 103524321 -14338306 - L2 LINE L2 -5 3267 3138 739 264 126 43 chr9 103524449 103524775 -14337852 - MLT1H LTR MaLR -8 541 189 512 228 44 33 chr9 103524907 103525087 -14337540 + L1M4 LINE L1 4504 4685 -1461 2184 110 3 7 chr9 103525112 103525402 -14337225 + AluSx SINE Alu 1 289 -23 2839 132 31 2 chr9 103525402 103525887 -14336740 - L1MB3 LINE L1 -9 6174 5676 2318 113 3 0 chr9 103525889 103526198 -14336429 - AluSx SINE Alu -2 310 1 404 133 0 13 chr9 103526199 103526274 -14336353 + (TTCC)n Simple_repeat Simple_repeat 4 77 0 2186 133 7 0 chr9 103526275 103526576 -14336051 - AluSx SINE Alu -9 303 1 2317 139 9 13 chr9 103526576 103526994 -14335633 - L1MB3 LINE L1 -496 5687 5268 970 95 24 0 chr9 103527023 103527149 -14335478 - AluSq/x SINE Alu -183 129 1 324 161 0 0 chr9 103527957 103528019 -14334608 + C-rich Low_complexity Low_complexity 1 62 0 291 304 11 11 chr9 103528042 103528134 -14334493 + CT-rich Low_complexity Low_complexity 2 93 0 468 306 60 75 chr9 103528471 103528886 -14333741 - L2 LINE L2 0 3272 2864 460 307 0 0 chr9 103528930 103529106 -14333521 + (TG)n Simple_repeat Simple_repeat 1 176 0 239 178 30 30 chr9 103529113 103529248 -14333379 + (TGAG)n Simple_repeat Simple_repeat 4 138 0 189 268 0 0 chr9 103529296 103529434 -14333193 + (TG)n Simple_repeat Simple_repeat 1 138 0 281 240 4 4 chr9 103529460 103529704 -14332923 + (TG)n Simple_repeat Simple_repeat 1 244 0 230 137 0 63 chr9 103529707 103529802 -14332825 + (TGAG)n Simple_repeat Simple_repeat 4 92 0 315 247 0 0 chr9 103529860 103530034 -14332593 + (TG)n Simple_repeat Simple_repeat 1 174 0 455 275 0 6 chr9 103530060 103530231 -14332396 + (TG)n Simple_repeat Simple_repeat 1 170 0 466 289 0 0 chr9 103530262 103530507 -14332120 + (TG)n Simple_repeat Simple_repeat 1 245 0 183 250 0 0 chr9 103530519 103530635 -14331992 + (TG)n Simple_repeat Simple_repeat 1 116 0 252 370 0 6 chr9 103530644 103530817 -14331810 + (CGTG)n Simple_repeat Simple_repeat 3 174 0 * 449 276 0 27 chr9 103530729 103530914 -14331713 + (TG)n Simple_repeat Simple_repeat 1 180 0 263 241 4 0 chr9 103530971 103531216 -14331411 + (TG)n Simple_repeat Simple_repeat 1 246 0 318 340 46 21 chr9 103531218 103531459 -14331168 - L2 LINE L2 -443 2871 2625 259 292 103 9 chr9 103531829 103532056 -14330571 + MIR3 SINE MIR 1 250 -12 599 206 123 7 chr9 103532104 103532259 -14330368 + MIR SINE MIR 73 245 -17 1982 122 42 7 chr9 103532422 103532708 -14329919 + AluJb SINE Alu 2 297 -15 199 239 43 65 chr9 103533425 103533517 -14329110 - L2 LINE L2 -265 3007 2918 1023 250 96 20 chr9 103533733 103534173 -14328454 + MLT1K LTR MaLR 2 474 -2 220 321 38 23 chr9 103534195 103534326 -14328301 - L2 LINE L2 -573 2741 2609 1241 217 66 74 chr9 103534381 103534529 -14328098 - MLT1C LTR MaLR 0 467 319 2114 113 0 61 chr9 103534529 103534857 -14327770 - AluSq SINE Alu -5 308 1 1241 217 66 74 chr9 103534857 103535179 -14327448 - MLT1C LTR MaLR -148 319 1 651 328 158 25 chr9 103535317 103535918 -14326709 + L3 LINE CR1 63 743 -834 315 269 12 108 chr9 103535931 103536098 -14326529 - L2 LINE L2 -25 3247 3097 203 395 0 0 chr9 103536102 103536211 -14326416 + L3 LINE CR1 794 902 -675 2350 103 24 8 chr9 103536642 103537011 -14325616 - THE1C LTR MaLR 0 375 1 186 238 0 79 chr9 103537041 103537104 -14325523 + L2 LINE L2 3194 3251 -21 216 212 47 59 chr9 103537160 103537245 -14325382 + MIR SINE MIR 105 188 -74 460 297 108 9 chr9 103537720 103537932 -14324695 - MIR SINE MIR -15 247 15 2884 181 30 5 chr9 103538411 103538986 -14323641 + L1MB3 LINE L1 5594 6182 -1 350 290 101 12 chr9 103539080 103539249 -14323378 - MIR SINE MIR -10 252 69 249 282 54 36 chr9 103539679 103539790 -14322837 - MIR SINE MIR -60 148 35 264 120 0 0 chr9 103540265 103540315 -14322312 + (CA)n Simple_repeat Simple_repeat 1 50 0 362 256 0 0 chr9 103540327 103540409 -14322218 + L2 LINE L2 3191 3272 0 232 367 31 0 chr9 103540472 103540600 -14322027 + MIR SINE MIR 103 234 -28 223 327 50 10 chr9 103540769 103540870 -14321757 - L2 LINE L2 -98 3174 3070 185 318 126 13 chr9 103541096 103541247 -14321380 + MIR SINE MIR 86 253 -9 612 230 64 47 chr9 103541784 103542018 -14320609 - MIR SINE MIR 0 262 23 1668 135 120 11 chr9 103542159 103542425 -14320202 - AluSg SINE Alu -15 295 1 334 266 119 28 chr9 103542620 103542763 -14319864 + L2 LINE L2 3158 3313 0 256 203 17 0 chr9 103543060 103543119 -14319508 - MLT1I LTR MaLR -3 406 347 802 277 10 10 chr9 103543174 103543376 -14319251 - MLT1I LTR MaLR -207 202 1 247 232 29 14 chr9 103543600 103543669 -14318958 - L2 LINE L2 -5 3308 3239 * 419 326 22 62 chr9 103543655 103543879 -14318748 + L2 LINE L2 3007 3221 -51 218 179 0 0 chr9 103543900 103543958 -14318669 + (ACTG)n Simple_repeat Simple_repeat 1 58 0 2357 105 0 3 chr9 103544023 103544329 -14318298 + AluSx SINE Alu 1 305 -7 856 275 141 29 chr9 103544373 103544784 -14317843 + L2 LINE L2 2857 3313 0 937 127 0 0 chr9 103545289 103545415 -14317212 - AluJb SINE Alu -186 126 1 268 323 34 27 chr9 103546166 103546301 -14316326 + L1MC/D LINE L1 5690 5826 -497 1980 155 0 37 chr9 103546301 103546445 -14316182 + AluJb SINE Alu 1 149 -163 2374 62 0 45 chr9 103546445 103546753 -14315874 + AluY SINE Alu 1 294 -17 1980 155 0 37 chr9 103546753 103546930 -14315697 + AluJb SINE Alu 149 310 -2 268 323 34 27 chr9 103546930 103546979 -14315648 + L1MC/D LINE L1 5826 5873 -450 1845 176 27 0 chr9 103546980 103547281 -14315346 - AluJb SINE Alu -3 309 1 336 203 235 7 chr9 103547729 103547890 -14314737 + MIR SINE MIR 33 216 -41 315 269 12 108 chr9 103548152 103548319 -14314308 + L2 LINE L2 3097 3247 -25 651 328 158 25 chr9 103548332 103548933 -14313694 - L3 LINE CR1 -834 743 63 1241 217 66 74 chr9 103549071 103549393 -14313234 + MLT1C LTR MaLR 1 319 -148 2114 113 0 61 chr9 103549393 103549721 -14312906 + AluSq SINE Alu 1 308 -5 1241 217 66 74 chr9 103549721 103549869 -14312758 + MLT1C LTR MaLR 319 467 0 222 321 38 23 chr9 103549924 103550055 -14312572 + L2 LINE L2 2609 2741 -573 1020 250 96 20 chr9 103550077 103550517 -14312110 - MLT1K LTR MaLR -2 474 2 227 324 222 4 chr9 103550733 103550958 -14311669 + L2 LINE L2 2918 3191 -81 577 238 20 7 chr9 103550964 103551115 -14311512 - MIR SINE MIR -5 257 105 881 134 13 47 chr9 103551134 103551283 -14311344 - FRAM SINE Alu -12 164 21 237 132 0 0 chr9 103552045 103552083 -14310544 + (TTTTC)n Simple_repeat Simple_repeat 3 40 0 2291 121 3 10 chr9 103552089 103552403 -14310224 - AluSx SINE Alu 0 312 1 2200 129 0 10 chr9 103552407 103552716 -14309911 - AluSx SINE Alu -6 306 1 305 287 17 9 chr9 103554185 103554300 -14308327 + MIR SINE MIR 35 150 -112 278 274 8 51 chr9 103554532 103554649 -14307978 - L2 LINE L2 -5 3308 3197 180 162 0 0 chr9 103554759 103554796 -14307831 + L2 LINE L2 3213 3249 -23 403 307 137 32 chr9 103555142 103555579 -14307048 + L2 LINE L2 2813 3295 -18 293 337 54 0 chr9 103555613 103555705 -14306922 - MIR SINE MIR -76 186 90 230 233 41 0 chr9 103556217 103556290 -14306337 - MIR SINE MIR -63 145 70 326 323 0 37 chr9 103556363 103556527 -14306100 + GA-rich Low_complexity Low_complexity 3 160 0 253 256 22 22 chr9 103556560 103556697 -14305930 + G-rich Low_complexity Low_complexity 2 138 0 215 114 23 0 chr9 103556705 103556749 -14305878 + C-rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr9 103556783 103556805 -14305822 + GC_rich Low_complexity Low_complexity 1 22 0 23 86 0 0 chr9 103556830 103556888 -14305739 + GC_rich Low_complexity Low_complexity 1 58 0 21 89 0 0 chr9 103556958 103557014 -14305613 + GC_rich Low_complexity Low_complexity 1 56 0 235 201 21 98 chr9 103557048 103557242 -14305385 + C-rich Low_complexity Low_complexity 2 180 0 207 0 0 0 chr9 103559464 103559487 -14303140 + (TG)n Simple_repeat Simple_repeat 2 24 0 249 33 0 0 chr9 103559997 103560027 -14302600 + (TC)n Simple_repeat Simple_repeat 1 30 0 23 33 0 0 chr9 103561450 103561480 -14301147 + AT_rich Low_complexity Low_complexity 1 30 0 194 0 39 0 chr9 103562032 103562058 -14300569 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 270 0 0 0 chr9 103564629 103564659 -14297968 + (CA)n Simple_repeat Simple_repeat 2 31 0 527 274 100 17 chr9 103567770 103568011 -14294616 - MIR SINE MIR 0 262 2 243 364 0 0 chr9 103568426 103568536 -14294091 + C-rich Low_complexity Low_complexity 1 110 0 455 116 0 23 chr9 103568734 103568820 -14293807 + (TCC)n Simple_repeat Simple_repeat 2 85 0 23 97 0 0 chr9 103569223 103569295 -14293332 + GC_rich Low_complexity Low_complexity 1 72 0 25 31 0 0 chr9 103569369 103569401 -14293226 + GC_rich Low_complexity Low_complexity 1 32 0 266 78 0 39 chr9 103571754 103571805 -14290822 + (TCTCTG)n Simple_repeat Simple_repeat 6 54 0 240 35 0 0 chr9 103573278 103573307 -14289320 + (GGGTG)n Simple_repeat Simple_repeat 3 31 0 275 221 13 39 chr9 103574223 103574300 -14288327 + CT-rich Low_complexity Low_complexity 2 76 0 21 82 0 0 chr9 103575030 103575079 -14287548 + GC_rich Low_complexity Low_complexity 1 49 0 227 294 0 0 chr9 103575549 103575600 -14287027 + C-rich Low_complexity Low_complexity 1 51 0 345 280 23 23 chr9 103575755 103575930 -14286697 + CT-rich Low_complexity Low_complexity 1 175 0 425 206 22 0 chr9 103576426 103576518 -14286109 - MER53 DNA DNA -2 187 94 854 134 0 0 chr9 103576628 103576777 -14285850 - MER53 DNA DNA -34 155 7 344 308 17 64 chr9 103577086 103577258 -14285369 + MIR SINE MIR 7 170 -92 214 327 127 0 chr9 103577349 103577459 -14285168 + MIR SINE MIR 65 188 -74 364 276 32 43 chr9 103577666 103577838 -14284789 + MIR SINE MIR 80 251 -11 234 91 0 0 chr9 103577838 103577871 -14284756 + (CTG)n Simple_repeat Simple_repeat 2 34 0 364 276 32 43 chr9 103577871 103577883 -14284744 + MIR SINE MIR 251 262 0 342 269 119 30 chr9 103577882 103578016 -14284611 + MIR SINE MIR 5 150 -112 * 263 292 34 11 chr9 103579205 103579294 -14283333 + MIR SINE MIR 62 152 -110 183 310 148 14 chr9 103579508 103579650 -14282977 - MIR SINE MIR -66 196 36 809 75 0 1 chr9 103580262 103580367 -14282260 + MER30 DNA MER1_type 1 140 -90 189 0 0 0 chr9 103580367 103580388 -14282239 + (TAA)n Simple_repeat Simple_repeat 2 22 0 809 75 0 1 chr9 103580388 103580442 -14282185 + MER30 DNA MER1_type 140 193 -37 382 281 35 0 chr9 103580548 103580662 -14281965 + MIR SINE MIR 74 191 -71 210 365 55 41 chr9 103580820 103580965 -14281662 - L2 LINE L2 -51 3221 3075 289 301 34 34 chr9 103581003 103581149 -14281478 - MIR3 SINE MIR -61 147 2 349 293 9 9 chr9 103581340 103581446 -14281181 - MIR SINE MIR -63 145 40 362 262 117 7 chr9 103581520 103581665 -14280962 + MIR SINE MIR 40 200 -62 452 298 0 30 chr9 103581804 103581935 -14280692 - MIR SINE MIR -108 154 28 2395 58 3 13 chr9 103582209 103582518 -14280109 + AluY SINE Alu 1 306 -5 2087 124 0 3 chr9 103582756 103583054 -14279573 + AluSx SINE Alu 3 299 -13 324 195 85 24 chr9 103583135 103583217 -14279410 - L2 LINE L2 0 3272 3186 2203 96 3 10 chr9 103583229 103583531 -14279096 + AluSx SINE Alu 1 300 -12 491 229 83 38 chr9 103583642 103583799 -14278828 - MER103 DNA DNA -2 164 1 260 240 0 0 chr9 103583942 103583992 -14278635 + MIR SINE MIR 94 143 -65 595 314 6 6 chr9 103584042 103584217 -14278410 - MIR3 SINE MIR -9 199 25 439 245 20 0 chr9 103584470 103584572 -14278055 + MIR SINE MIR 121 224 -38 1996 123 3 3 chr9 103584589 103584881 -14277746 + AluY SINE Alu 1 292 -19 408 283 73 58 chr9 103585516 103585707 -14276920 - MIR3 SINE MIR -7 201 8 477 248 39 112 chr9 103585757 103585878 -14276749 + MIR SINE MIR 21 116 -146 2076 100 0 14 chr9 103585878 103586198 -14276429 + AluSx SINE Alu 1 316 0 477 248 39 112 chr9 103586198 103586333 -14276294 + MIR SINE MIR 116 259 -3 218 177 0 97 chr9 103586894 103586956 -14275671 + MIR SINE MIR 82 137 -71 2229 105 0 3 chr9 103587672 103587985 -14274642 - AluSx SINE Alu 0 312 1 1198 210 18 50 chr9 103588581 103588923 -14273704 - MER33 DNA MER1_type -6 318 1 1698 146 3 37 chr9 103589004 103589326 -14273301 + AluJo SINE Alu 1 311 -1 213 121 0 0 chr9 103590210 103590243 -14272384 + (A)n Simple_repeat Simple_repeat 1 33 0 239 318 103 24 chr9 103590436 103590562 -14272065 - L2 LINE L2 -1 3271 3136 296 24 24 0 chr9 103590617 103590658 -14271969 + (TTCA)n Simple_repeat Simple_repeat 1 42 0 401 311 68 22 chr9 103590947 103591174 -14271453 + MIR SINE MIR 21 255 -7 204 67 0 0 chr9 103591641 103591671 -14270956 + (CA)n Simple_repeat Simple_repeat 1 30 0 511 237 59 12 chr9 103591741 103591910 -14270717 - L1ME3 LINE L1 -14 6148 5972 368 130 19 46 chr9 103592729 103592837 -14269790 + (CAGAGA)n Simple_repeat Simple_repeat 4 108 0 257 229 45 56 chr9 103592848 103593027 -14269600 + (CAGAGA)n Simple_repeat Simple_repeat 4 180 0 2278 87 0 0 chr9 103593096 103593396 -14269231 + AluSc SINE Alu 1 300 -9 350 288 59 0 chr9 103593768 103593886 -14268741 + MIR SINE MIR 80 204 -58 1685 135 0 0 chr9 103594414 103594658 -14267969 - AluSx SINE Alu -68 244 1 310 263 167 9 chr9 103594920 103595034 -14267593 - MIR SINE MIR -52 210 79 329 212 22 109 chr9 103595559 103595651 -14266976 - L1MC5 LINE L1 -48 7913 7835 2134 94 0 14 chr9 103595651 103595948 -14266679 - AluSg SINE Alu -17 293 1 329 212 22 109 chr9 103595948 103595992 -14266635 - L1MC5 LINE L1 -126 7835 7789 440 351 112 35 chr9 103596167 103596569 -14266058 - L2 LINE L2 -24 3248 2816 287 286 48 40 chr9 103596762 103596888 -14265739 - L2 LINE L2 -879 2435 2309 632 255 21 31 chr9 103597623 103597815 -14264812 + MIR SINE MIR 56 245 -17 250 350 6 6 chr9 103598740 103598917 -14263710 + (TG)n Simple_repeat Simple_repeat 1 177 0 211 290 71 54 chr9 103599160 103599290 -14263337 - MIR SINE MIR -62 146 20 343 220 80 34 chr9 103599778 103599901 -14262726 + MIR SINE MIR 28 155 -53 210 71 0 0 chr9 103599919 103599947 -14262680 + (CA)n Simple_repeat Simple_repeat 2 29 0 350 288 137 0 chr9 103600027 103600166 -14262461 - MIR SINE MIR -92 170 13 2321 79 3 0 chr9 103600264 103600567 -14262060 - AluSp SINE Alu -8 305 2 406 308 0 23 chr9 103600567 103600700 -14261927 - MIR SINE MIR -77 185 56 2184 85 0 31 chr9 103600848 103601167 -14261460 - AluY SINE Alu -2 309 1 285 325 50 17 chr9 103601237 103601357 -14261270 + L2 LINE L2 3125 3248 -24 717 229 105 0 chr9 103601421 103601574 -14261053 + FRAM SINE Alu 1 169 -7 364 262 230 0 chr9 103601836 103601962 -14260665 - MIR SINE MIR -73 189 35 947 119 14 0 chr9 103602059 103602202 -14260425 - AluSg/x SINE Alu -2 310 166 348 236 57 0 chr9 103603249 103603355 -14259272 - L1MC4 LINE L1 0 8042 7931 376 270 126 0 chr9 103603391 103603502 -14259125 - MIR SINE MIR -90 172 48 315 0 0 0 chr9 103603756 103603791 -14258836 + (TG)n Simple_repeat Simple_repeat 2 36 0 1637 168 3 7 chr9 103603791 103604082 -14258545 - AluJb SINE Alu -13 299 10 2123 275 21 23 chr9 103604090 103604751 -14257876 - L1MC4a LINE L1 -1881 5927 5268 265 323 37 24 chr9 103604936 103605100 -14257527 - L1MC4a LINE L1 -1147 4999 4834 1664 226 35 35 chr9 103605117 103605578 -14257049 - MLT1C LTR MaLR -6 461 1 2114 113 20 0 chr9 103605586 103605888 -14256739 - AluSx SINE Alu -4 308 1 454 316 24 72 chr9 103605888 103606138 -14256489 - L1MC4a LINE L1 -1317 4829 4592 354 323 68 47 chr9 103606189 103606410 -14256217 - L1MC4a LINE L1 -1668 4478 4263 1608 156 14 44 chr9 103606410 103606609 -14256018 - AluJo SINE Alu -26 286 97 2271 72 13 3 chr9 103606609 103606913 -14255714 - AluY SINE Alu -4 307 1 1608 156 14 44 chr9 103606913 103607008 -14255619 - AluJo SINE Alu -215 97 1 354 323 68 47 chr9 103607008 103607167 -14255460 - L1MC4a LINE L1 -1883 4263 4082 2048 116 0 25 chr9 103607167 103607487 -14255140 + AluSq SINE Alu 1 312 -1 354 323 68 47 chr9 103607487 103607616 -14255011 - L1MC4a LINE L1 -2064 4082 3957 274 315 140 54 chr9 103607743 103608057 -14254570 + L2 LINE L2 2932 3272 0 683 289 105 13 chr9 103608061 103608300 -14254327 - MIR SINE MIR 0 262 2 220 208 0 21 chr9 103608342 103608390 -14254237 + (TGAA)n Simple_repeat Simple_repeat 4 50 0 1992 116 7 0 chr9 103608597 103608891 -14253736 - AluSx SINE Alu -16 296 1 452 269 0 10 chr9 103608957 103609061 -14253566 + MER81 DNA DNA 8 110 -4 265 349 18 9 chr9 103609086 103609195 -14253432 + L3 LINE CR1 1354 1463 -114 1095 234 19 11 chr9 103609965 103610226 -14252401 - L1ME3 LINE L1 -14 6148 5886 1973 192 62 9 chr9 103610245 103610730 -14251897 + LTR27 LTR ERV1 3 490 -11 1184 187 48 29 chr9 103610737 103611010 -14251617 - L1ME3 LINE L1 -287 5875 5598 184 256 23 0 chr9 103612142 103612185 -14250442 - L2 LINE L2 -9 3263 3220 2192 105 0 9 chr9 103612310 103612625 -14250002 - AluSx SINE Alu 0 312 1 445 265 196 32 chr9 103613263 103613482 -14249145 - MIR SINE MIR -6 256 2 1404 295 80 46 chr9 103613538 103613633 -14248994 + L1MC/D LINE L1 4264 4354 -2042 2103 77 3 42 chr9 103613633 103613943 -14248684 + AluY SINE Alu 1 298 -13 1404 295 80 46 chr9 103613943 103614301 -14248326 + L1MC/D LINE L1 4354 4698 -1698 2034 98 0 11 chr9 103614301 103614612 -14248015 - AluSq SINE Alu 0 308 1 1404 295 80 46 chr9 103614612 103615297 -14247330 + L1MC/D LINE L1 4698 5458 -938 1546 170 0 42 chr9 103615297 103615580 -14247047 + AluJb SINE Alu 30 300 -12 1404 295 80 46 chr9 103615580 103615782 -14246845 + L1MC/D LINE L1 5458 5652 -744 1868 133 47 7 chr9 103615880 103616180 -14246447 - AluSx SINE Alu 0 312 1 21 57 0 0 chr9 103616273 103616308 -14246319 + AT_rich Low_complexity Low_complexity 1 35 0 1867 216 39 30 chr9 103616309 103616772 -14245855 + MLT1C LTR MaLR 1 467 0 2168 156 16 26 chr9 103616802 103617181 -14245446 - THE1C LTR MaLR 0 375 1 1587 148 8 4 chr9 103617256 103617512 -14245115 + AluJo SINE Alu 1 257 -55 2078 109 0 23 chr9 103617585 103617887 -14244740 + AluSx SINE Alu 1 295 -17 322 298 0 0 chr9 103618592 103618686 -14243941 - MER117 DNA MER1_type -29 168 75 244 348 11 0 chr9 103618826 103618918 -14243709 + MIR SINE MIR 118 210 -52 900 240 15 5 chr9 103619166 103619362 -14243265 - MIR SINE MIR -23 239 42 205 293 12 38 chr9 103619398 103619477 -14243150 - MIR SINE MIR -61 147 70 260 250 102 23 chr9 103619834 103619922 -14242705 - MIR SINE MIR -148 114 20 453 219 89 8 chr9 103620228 103620351 -14242276 + MIR SINE MIR 20 152 -110 706 101 20 0 chr9 103620352 103620451 -14242176 + AluSx SINE Alu 2 102 -211 1159 133 0 22 chr9 103620541 103620775 -14241852 + AluSx SINE Alu 107 336 0 2193 101 3 0 chr9 103620862 103621169 -14241458 + AluSx SINE Alu 1 308 -4 189 0 0 0 chr9 103621962 103621983 -14240644 + (TG)n Simple_repeat Simple_repeat 2 22 0 2352 82 0 0 chr9 103621983 103622278 -14240349 - AluY SINE Alu -13 298 1 2909 221 43 32 chr9 103622982 103623049 -14239578 + L1MB7 LINE L1 5376 5441 -743 2021 129 0 16 chr9 103623049 103623360 -14239267 + AluSx SINE Alu 1 306 -6 2909 221 43 32 chr9 103623360 103623407 -14239220 + L1MB7 LINE L1 5441 5486 -698 2147 115 0 0 chr9 103623407 103623712 -14238915 + AluSq SINE Alu 4 308 -5 2909 221 43 32 chr9 103623712 103624386 -14238241 + L1MB7 LINE L1 5486 6174 -10 322 290 129 26 chr9 103624439 103624594 -14238033 - MIR SINE MIR -1 261 91 345 314 59 0 chr9 103624657 103624775 -14237852 + MIR SINE MIR 68 192 -70 2059 112 0 3 chr9 103624947 103625242 -14237385 - AluSg SINE Alu -14 296 3 471 271 72 59 chr9 103625505 103625899 -14236728 + MLT1H LTR MaLR 53 549 0 1950 126 16 10 chr9 103625987 103626297 -14236330 + AluSx SINE Alu 1 312 0 2449 57 0 0 chr9 103626487 103626787 -14235840 + AluY SINE Alu 1 300 -11 201 313 45 15 chr9 103626811 103626878 -14235749 - MIR SINE MIR -75 187 119 213 293 6 96 chr9 103627109 103627199 -14235428 + L2 LINE L2 2916 3012 -260 3839 140 21 81 chr9 103627199 103627559 -14235068 - L1MB2 LINE L1 0 6171 5791 1719 181 7 0 chr9 103627559 103627863 -14234764 - AluJb SINE Alu -6 306 1 3839 140 21 81 chr9 103627863 103628280 -14234347 - L1MB2 LINE L1 -380 5791 5350 204 40 0 0 chr9 103628280 103628305 -14234322 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 2000 117 0 4 chr9 103628305 103628586 -14234041 - AluSq SINE Alu -33 280 1 3839 140 21 81 chr9 103628586 103628619 -14234008 - L1MB2 LINE L1 -730 5441 5408 213 293 6 96 chr9 103628619 103628685 -14233942 + L2 LINE L2 3012 3058 -214 501 172 32 25 chr9 103628731 103628888 -14233739 + CT-rich Low_complexity Low_complexity 5 162 0 381 321 78 42 chr9 103628908 103629101 -14233526 + L2 LINE L2 3073 3272 0 279 257 30 10 chr9 103629105 103629206 -14233421 + (TGGA)n Simple_repeat Simple_repeat 1 103 0 209 323 32 0 chr9 103629627 103629720 -14232907 + CT-rich Low_complexity Low_complexity 2 97 0 467 263 45 8 chr9 103629779 103629912 -14232715 + MIR SINE MIR 77 214 -48 293 307 59 0 chr9 103630309 103630410 -14232217 + L2 LINE L2 3165 3271 -1 1085 266 102 28 chr9 103630490 103630621 -14232006 + LTR16C LTR ERVL 72 192 -299 1561 147 66 4 chr9 103630621 103630741 -14231886 + AluJb SINE Alu 1 112 -200 282 56 0 0 chr9 103630741 103630777 -14231850 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 1561 147 66 4 chr9 103630777 103630929 -14231698 + AluJb SINE Alu 112 290 -22 1085 266 102 28 chr9 103630929 103631188 -14231439 + LTR16C LTR ERVL 192 491 0 2349 69 10 3 chr9 103631302 103631605 -14231022 - AluSp SINE Alu -7 306 2 463 309 41 31 chr9 103631848 103632042 -14230585 + MIR SINE MIR 21 216 -46 353 291 173 8 chr9 103632099 103632226 -14230401 + MIR SINE MIR 3 150 -112 3596 161 57 20 chr9 103632235 103632382 -14230245 - Charlie1a DNA MER1_type -1306 1455 1315 2000 119 17 0 chr9 103632382 103632676 -14229951 + AluSx SINE Alu 1 299 -13 3596 161 57 20 chr9 103632676 103633281 -14229346 - Charlie1a DNA MER1_type -1446 1315 675 2187 212 77 2 chr9 103633274 103633792 -14228835 - Charlie1a DNA MER1_type -804 651 95 * 2158 129 3 0 chr9 103633800 103634111 -14228516 - AluSx SINE Alu 0 312 1 2063 120 3 0 chr9 103634329 103634630 -14227997 - AluSx SINE Alu -10 302 1 446 341 138 40 chr9 103635186 103635591 -14227036 - L2 LINE L2 -3 3269 2825 220 209 0 0 chr9 103635900 103635943 -14226684 - L2 LINE L2 -6 3307 3265 567 312 0 0 chr9 103635988 103636145 -14226482 + MIR3 SINE MIR 45 201 -7 452 209 9 27 chr9 103636119 103636229 -14226398 + MIR3 SINE MIR 53 160 -48 * 248 283 28 0 chr9 103636661 103636767 -14225860 + (CA)n Simple_repeat Simple_repeat 1 109 0 1756 143 3 38 chr9 103637119 103637433 -14225194 - AluJo SINE Alu -9 303 1 314 257 69 0 chr9 103637513 103637614 -14225013 + MIR SINE MIR 37 144 -118 985 302 134 5 chr9 103637615 103638026 -14224601 - MLT1G1 LTR MaLR 0 595 132 1936 98 58 0 chr9 103638182 103638458 -14224169 + AluSg SINE Alu 1 292 -18 469 262 169 12 chr9 103638631 103638803 -14223824 - MIR SINE MIR 0 262 64 1809 137 7 46 chr9 103639016 103639322 -14223305 + AluSx SINE Alu 1 294 -18 505 294 80 12 chr9 103639331 103639494 -14223133 + MIR SINE MIR 32 205 -57 320 246 33 33 chr9 103639527 103639649 -14222978 + L1MC5 LINE L1 7806 7927 -34 1671 140 21 21 chr9 103639655 103639941 -14222686 + AluJb SINE Alu 1 286 -26 1955 127 17 17 chr9 103640012 103640312 -14222315 + AluSx SINE Alu 1 300 -12 760 191 20 62 chr9 103640681 103640775 -14221852 - L1P LINE L1 -749 5419 5323 1802 162 0 0 chr9 103640775 103641078 -14221549 - AluJb SINE Alu -9 303 1 760 191 20 62 chr9 103641078 103641204 -14221423 - L1P LINE L1 -845 5323 5204 352 289 96 0 chr9 103641286 103641390 -14221237 + MIR SINE MIR 68 181 -81 1712 273 179 21 chr9 103642363 103643384 -14219243 + HAL1 LINE L1 825 2028 -479 1807 128 28 17 chr9 103643384 103643673 -14218954 + AluSx SINE Alu 1 292 -20 1712 273 179 21 chr9 103643673 103643736 -14218891 + HAL1 LINE L1 2028 2080 -427 237 293 13 0 chr9 103643882 103643957 -14218670 + HAL1 LINE L1 2074 2149 -358 718 111 0 0 chr9 103644117 103644216 -14218411 - AluSp/q SINE Alu -12 301 203 751 147 0 9 chr9 103644313 103644484 -14218143 + AluJb SINE Alu 171 340 0 1862 150 0 10 chr9 103644682 103644865 -14217762 - AluJb SINE Alu -2 310 130 297 0 0 0 chr9 103644865 103644898 -14217729 + (TA)n Simple_repeat Simple_repeat 2 34 0 1862 150 0 10 chr9 103644898 103645027 -14217600 - AluJb SINE Alu -182 130 1 670 133 20 0 chr9 103645253 103645351 -14217276 - AluS SINE Alu -212 101 2 278 297 145 7 chr9 103645351 103645496 -14217131 + MIR SINE MIR 60 224 -38 211 184 0 0 chr9 103645496 103645534 -14217093 + CT-rich Low_complexity Low_complexity 2 39 0 243 125 0 0 chr9 103645697 103645737 -14216890 + (TG)n Simple_repeat Simple_repeat 2 41 0 301 229 130 53 chr9 103646322 103646453 -14216174 + MIR SINE MIR 64 204 -58 468 0 0 0 chr9 103646506 103646558 -14216069 + (TG)n Simple_repeat Simple_repeat 2 53 0 940 175 0 6 chr9 103646569 103646729 -14215898 + MER5B DNA MER1_type 20 178 0 197 246 70 0 chr9 103646738 103646795 -14215832 - MER5A DNA MER1_type -1 188 128 2090 126 7 0 chr9 103646840 103647149 -14215478 - AluSx SINE Alu -1 311 1 976 70 29 17 chr9 103647163 103647335 -14215292 + (TTTC)n Simple_repeat Simple_repeat 1 174 0 2127 113 3 0 chr9 103647336 103647801 -14214826 - AluSp SINE Alu 0 466 1 242 328 127 53 chr9 103647851 103648150 -14214477 - L2 LINE L2 -42 3230 2910 1990 139 0 3 chr9 103648661 103648963 -14213664 - AluSx SINE Alu -11 301 1 281 202 169 22 chr9 103649085 103649174 -14213453 + L2 LINE L2 3168 3269 -3 1834 191 50 17 chr9 103649189 103649546 -14213081 + MLT1A2 LTR MaLR 1 369 -5 255 250 104 85 chr9 103650008 103650268 -14212359 - MLT1K LTR MaLR -158 430 166 399 83 0 0 chr9 103650307 103650367 -14212260 + (TG)n Simple_repeat Simple_repeat 2 61 0 227 169 14 127 chr9 103651032 103651103 -14211524 + MER58A DNA MER1_type 45 107 0 * 362 216 0 14 chr9 103651103 103651166 -14211461 + MER58A DNA MER1_type 163 224 0 2104 100 34 0 chr9 103651280 103651571 -14211056 - AluSx SINE Alu -10 302 2 2206 76 24 0 chr9 103652252 103652540 -14210087 - AluY SINE Alu -16 295 1 947 243 98 55 chr9 103652549 103652704 -14209923 - L1ME3 LINE L1 0 6164 6017 1835 151 7 3 chr9 103652704 103652996 -14209631 - AluJb SINE Alu -19 293 1 947 243 98 55 chr9 103652996 103653360 -14209267 - L1ME3 LINE L1 -147 6017 5593 258 286 0 0 chr9 103653384 103653447 -14209180 - MIR SINE MIR -109 153 91 180 310 0 70 chr9 103653495 103653547 -14209080 + L3 LINE CR1 575 622 -955 1692 147 3 38 chr9 103653547 103653860 -14208767 - AluJb SINE Alu -6 306 5 180 310 0 70 chr9 103653860 103653878 -14208749 + L3 LINE CR1 622 640 -937 2342 75 0 28 chr9 103653879 103654199 -14208428 - AluY SINE Alu 0 311 1 1407 251 108 58 chr9 103654805 103655370 -14207257 + MLT1E LTR MaLR 1 593 0 275 259 0 0 chr9 103655449 103655530 -14207097 + (TG)n Simple_repeat Simple_repeat 2 82 0 904 217 16 21 chr9 103656150 103656339 -14206288 - MIR SINE MIR -1 261 74 698 165 26 0 chr9 103658527 103658642 -14203985 + FRAM SINE Alu 23 140 -36 755 93 19 37 chr9 103658653 103658815 -14203812 + (GGGAA)n Simple_repeat Simple_repeat 2 160 0 264 286 7 19 chr9 103658794 103658948 -14203679 + A-rich Low_complexity Low_complexity 3 154 0 * 348 322 63 0 chr9 103660219 103660362 -14202265 - MIR SINE MIR -41 221 70 * 373 302 59 53 chr9 103660356 103660504 -14202123 + L2 LINE L2 1239 1390 -1924 1830 166 0 7 chr9 103660504 103660811 -14201816 - AluJo SINE Alu -7 305 1 373 302 59 53 chr9 103660811 103660831 -14201796 + L2 LINE L2 1390 1408 -1906 523 141 41 116 chr9 103660833 103660855 -14201772 + MER63 DNA MER1_type 15 37 -1025 1542 151 55 19 chr9 103660855 103661146 -14201481 + AluJb SINE Alu 1 301 0 523 141 41 116 chr9 103661146 103661243 -14201384 + MER63 DNA MER1_type 37 752 -310 2141 115 3 6 chr9 103661301 103661613 -14201014 - AluSx SINE Alu -1 311 1 722 255 60 47 chr9 103661729 103661923 -14200704 + L2 LINE L2 1570 1771 -1543 2029 127 0 19 chr9 103661923 103662239 -14200388 - AluSx SINE Alu -2 310 1 722 255 60 47 chr9 103662239 103662342 -14200285 + L2 LINE L2 1771 1871 -1443 279 279 139 6 chr9 103662494 103662666 -14199961 + L2 LINE L2 2827 3021 -292 257 167 19 37 chr9 103662705 103662759 -14199868 - AluS SINE Alu -206 96 44 752 280 71 34 chr9 103662759 103662998 -14199629 + L2 LINE L2 3066 3313 0 190 277 0 77 chr9 103663008 103663073 -14199554 - MIR SINE MIR -133 75 16 487 99 0 25 chr9 103663301 103663382 -14199245 + (TCTCC)n Simple_repeat Simple_repeat 1 79 0 2969 145 92 2 chr9 103663868 103664414 -14198213 + L1MB3 LINE L1 5588 6182 -1 237 354 165 0 chr9 103665038 103665202 -14197425 + MIR SINE MIR 31 221 -41 204 250 0 0 chr9 103665649 103665689 -14196938 - MIR SINE MIR 0 262 223 229 235 0 86 chr9 103666093 103666174 -14196453 + L2 LINE L2 3161 3234 -79 322 295 92 12 chr9 103666216 103666389 -14196238 + MIR SINE MIR 75 261 -1 207 0 0 0 chr9 103666809 103666832 -14195795 + (T)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chr9 103667690 103667711 -14194916 + AT_rich Low_complexity Low_complexity 1 21 0 384 22 0 0 chr9 103668766 103668811 -14193816 + (TG)n Simple_repeat Simple_repeat 2 46 0 22 35 0 0 chr9 103670772 103670801 -14191826 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr9 103673839 103673860 -14188767 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr9 103674102 103674133 -14188494 + AT_rich Low_complexity Low_complexity 1 31 0 323 213 18 124 chr9 103674557 103674726 -14187901 - L1ME4a LINE L1 -20 6101 5951 240 59 0 0 chr9 103675544 103675578 -14187049 + (CA)n Simple_repeat Simple_repeat 1 34 0 23 33 0 0 chr9 103676469 103676499 -14186128 + AT_rich Low_complexity Low_complexity 1 30 0 1911 167 7 3 chr9 103679327 103679632 -14182995 - AluSx SINE Alu -6 306 1 1319 165 7 63 chr9 103680185 103680488 -14182139 - AluJo SINE Alu -6 306 21 274 320 51 40 chr9 103681242 103681417 -14181210 + L2 LINE L2 2685 2861 -453 746 264 107 0 chr9 103681849 103682046 -14180581 + MIR SINE MIR 12 229 -33 183 392 46 15 chr9 103682802 103682932 -14179695 + L2 LINE L2 2936 3069 -203 2076 153 0 0 chr9 103683470 103683778 -14178849 - AluSx SINE Alu -4 308 1 242 291 35 23 chr9 103683862 103683948 -14178679 + MIR SINE MIR 88 174 -88 349 288 110 0 chr9 103684247 103684365 -14178262 + MER94 DNA DNA 4 134 0 294 215 63 0 chr9 103685046 103685125 -14177502 + MIR SINE MIR 176 259 -3 180 229 180 33 chr9 103685160 103685221 -14177406 - L2 LINE L2 -9 3263 3194 2237 79 34 0 chr9 103685410 103685701 -14176926 + AluSx SINE Alu 1 301 -11 1344 203 0 0 chr9 103685819 103686055 -14176572 + AluJb SINE Alu 46 281 -31 30 45 0 0 chr9 103686584 103686628 -14175999 + AT_rich Low_complexity Low_complexity 1 44 0 918 190 68 34 chr9 103686814 103687019 -14175608 + MER58C DNA MER1_type 3 214 -1 271 241 120 56 chr9 103698815 103698923 -14163704 - MIR SINE MIR -60 202 88 414 313 42 14 chr9 103699575 103699719 -14162908 - MIR3 SINE MIR -46 162 15 513 254 65 43 chr9 103700138 103700372 -14162255 - MIR SINE MIR -14 248 3 466 346 0 6 chr9 103700709 103700871 -14161756 + MIR3 SINE MIR 41 201 -7 299 317 189 12 chr9 103701335 103701499 -14161128 - MIR SINE MIR -14 248 56 754 280 285 17 chr9 103701519 103702059 -14160568 + L2 LINE L2 1604 2288 -1026 792 63 0 0 chr9 103702159 103702270 -14160357 + (TCCCC)n Simple_repeat Simple_repeat 2 112 0 1089 179 0 0 chr9 103702286 103702459 -14160168 - AluSg/x SINE Alu -40 272 100 256 275 133 8 chr9 103702533 103702653 -14159974 + L2 LINE L2 3165 3299 -14 1878 132 51 10 chr9 103702830 103703248 -14159379 - AluSx SINE Alu 0 432 3 243 0 0 0 chr9 103703504 103703531 -14159096 + (TTATG)n Simple_repeat Simple_repeat 2 28 0 2379 84 3 0 chr9 103703779 103704076 -14158551 + AluSp SINE Alu 1 298 -15 279 114 0 0 chr9 103704589 103704633 -14157994 + (CA)n Simple_repeat Simple_repeat 1 44 0 436 278 26 20 chr9 103705003 103705154 -14157473 - MIR SINE MIR -79 183 32 408 314 128 10 chr9 103705326 103705465 -14157162 - MIR SINE MIR -1 261 89 2030 128 3 7 chr9 103705465 103705755 -14156872 + AluSx SINE Alu 1 289 -23 408 314 128 10 chr9 103705755 103705819 -14156808 - MIR SINE MIR -173 89 34 418 351 63 34 chr9 103706506 103706616 -14156011 - MIR SINE MIR -11 251 146 2848 95 3 14 chr9 103706616 103706984 -14155643 + THE1B LTR MaLR 1 364 0 418 351 63 34 chr9 103706984 103707112 -14155515 - MIR SINE MIR -116 146 6 450 267 57 55 chr9 103707694 103707931 -14154696 - MIR SINE MIR -12 250 16 2514 80 0 0 chr9 103708450 103708761 -14153866 + AluY SINE Alu 1 311 0 415 338 42 42 chr9 103709092 103709329 -14153298 + L2 LINE L2 2854 3090 -182 723 214 29 58 chr9 103710049 103710255 -14152372 + MIR SINE MIR 50 249 -13 301 179 214 51 chr9 103711303 103711420 -14151207 + MER5C DNA MER1_type 20 155 -169 2630 153 66 6 chr9 103711440 103711870 -14150757 + L1MB3 LINE L1 5683 6086 -97 1708 84 0 5 chr9 103711870 103712083 -14150544 + AluSg SINE Alu 1 212 -98 4464 109 0 0 chr9 103712083 103712680 -14149947 + L1PA14 LINE L1 5564 6160 -1 2630 153 66 6 chr9 103712680 103712719 -14149908 + L1MB3 LINE L1 6085 6181 -2 2251 213 87 13 chr9 103712750 103713289 -14149338 - L1ME1 LINE L1 -5 6161 5583 235 200 60 0 chr9 103713303 103713353 -14149274 - L1ME1 LINE L1 -561 5603 5551 376 233 58 8 chr9 103713354 103713474 -14149153 + MER5C DNA MER1_type 198 323 -1 261 294 291 28 chr9 103713504 103713933 -14148694 - L2 LINE L2 -337 2977 2436 1060 248 156 9 chr9 103714429 103714877 -14147750 + LTR33 LTR ERVL 8 521 0 1988 163 0 3 chr9 103715538 103715845 -14146782 + AluSx SINE Alu 1 306 -6 394 326 68 63 chr9 103715977 103716419 -14146208 + L1MC/D LINE L1 5255 5698 -2110 343 62 46 5 chr9 103716439 103716503 -14146124 - MADE1 DNA Mariner -37 43 1 242 227 11 45 chr9 103716510 103716598 -14146029 + L1MC/D LINE L1 5732 5816 -1992 2261 120 3 0 chr9 103716606 103716915 -14145712 + AluSx SINE Alu 1 310 -2 2315 103 0 0 chr9 103717100 103717402 -14145225 + AluSx SINE Alu 11 312 0 442 134 21 52 chr9 103717556 103717625 -14145002 - LTR40a LTR ERVL -425 94 27 1806 201 24 29 chr9 103717625 103717999 -14144628 - MLT1A2 LTR MaLR -2 372 1 442 134 21 52 chr9 103717999 103718026 -14144601 - LTR40a LTR ERVL -492 27 1 1739 188 20 20 chr9 103718120 103718477 -14144150 + LTR40b LTR ERVL 106 462 0 1135 243 99 26 chr9 103718477 103718914 -14143713 + MLT1F1 LTR MaLR 67 546 -21 225 206 14 41 chr9 103719012 103719085 -14143542 + L1MC/D LINE L1 5755 5825 -1983 303 185 0 19 chr9 103719087 103719141 -14143486 + Alu SINE Alu 1 53 -247 1170 123 50 14 chr9 103719406 103719719 -14142908 + THE1C LTR MaLR 1 375 0 294 73 0 0 chr9 103719984 103720025 -14142602 + (CA)n Simple_repeat Simple_repeat 2 42 0 727 288 0 10 chr9 103720233 103720431 -14142196 + MIR SINE MIR 46 241 -21 324 259 121 123 chr9 103721137 103721615 -14141012 + L1M2 LINE L1 533 1009 -5840 268 207 166 103 chr9 103722135 103722240 -14140387 + MIR SINE MIR 30 148 -114 2318 113 0 0 chr9 103722240 103722551 -14140076 + AluSx SINE Alu 1 311 -1 268 207 166 103 chr9 103722551 103722590 -14140037 + MIR SINE MIR 148 183 -79 381 221 48 10 chr9 103722651 103722755 -14139872 + L2 LINE L2 3197 3304 -9 251 317 49 27 chr9 103723300 103723483 -14139144 - MIR3 SINE MIR -8 200 14 249 316 0 25 chr9 103723505 103723584 -14139043 + GA-rich Low_complexity Low_complexity 5 81 0 318 295 93 7 chr9 103723647 103723786 -14138841 - MIR SINE MIR -77 185 35 2171 92 28 3 chr9 103723880 103724163 -14138464 + AluSx SINE Alu 1 290 -22 180 0 0 0 chr9 103724167 103724187 -14138440 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 470 274 11 62 chr9 103724898 103725077 -14137550 - MIR3 SINE MIR -25 183 14 2315 101 0 3 chr9 103725633 103725940 -14136687 + AluSx SINE Alu 1 306 -6 717 76 0 0 chr9 103727445 103727550 -14135077 + (TTTAG)n Simple_repeat Simple_repeat 3 107 0 1866 132 3 51 chr9 103727550 103727846 -14134781 - AluSx SINE Alu -30 282 1 2393 103 3 3 chr9 103728219 103728530 -14134097 - AluSx SINE Alu -1 311 1 216 355 66 0 chr9 103729060 103729212 -14133415 - MIR SINE MIR -1 261 100 2022 143 0 0 chr9 103729212 103729506 -14133121 + AluSx SINE Alu 1 294 -18 525 268 41 16 chr9 103729624 103729818 -14132809 + MIR SINE MIR 28 226 -36 1821 142 3 48 chr9 103729937 103730083 -14132544 + AluJb SINE Alu 1 127 -185 2348 88 7 0 chr9 103730083 103730378 -14132249 + AluY SINE Alu 1 297 -14 1821 142 3 48 chr9 103730378 103730540 -14132087 + AluJb SINE Alu 127 295 -17 414 100 0 0 chr9 103731291 103731351 -14131276 + (TTCC)n Simple_repeat Simple_repeat 1 60 0 1731 125 25 56 chr9 103731351 103731670 -14130957 - AluSx SINE Alu -3 309 1 21 71 0 0 chr9 103731679 103731721 -14130906 + AT_rich Low_complexity Low_complexity 1 42 0 775 131 17 17 chr9 103731863 103732039 -14130588 + (TCTA)n Simple_repeat Simple_repeat 2 177 0 861 194 0 0 chr9 103732048 103732228 -14130399 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 329 242 36 91 chr9 103732358 103732523 -14130104 - L1ME3 LINE L1 -46 6116 5961 225 211 137 120 chr9 103732618 103732686 -14129941 - L1MC5 LINE L1 -436 7525 7460 2297 105 0 0 chr9 103732686 103732982 -14129645 + AluSx SINE Alu 1 296 -16 225 211 137 120 chr9 103732982 103733088 -14129539 - L1MC5 LINE L1 -501 7460 7348 4086 121 17 28 chr9 103733807 103734400 -14128227 - MER39B LTR ERV1 -1 652 65 2156 112 3 10 chr9 103734400 103734704 -14127923 + AluSx SINE Alu 10 311 -1 4086 121 17 28 chr9 103734704 103734763 -14127864 - MER39B LTR ERV1 -588 65 7 804 149 0 8 chr9 103734804 103734938 -14127689 + FLAM_C SINE Alu 1 133 0 361 284 125 17 chr9 103734975 103735151 -14127476 + LTR16C LTR ERVL 297 491 0 612 140 11 0 chr9 103735593 103735718 -14126909 - AluSq SINE Alu 0 328 203 2132 110 0 0 chr9 103735719 103736021 -14126606 + AluSg SINE Alu 1 302 0 1600 128 0 0 chr9 103736021 103736239 -14126388 - AluSq SINE Alu -95 218 1 1915 118 0 4 chr9 103736242 103736539 -14126088 - AluSx SINE Alu 0 309 14 2377 98 0 13 chr9 103736541 103736858 -14125769 - AluSq SINE Alu 0 313 1 3664 132 69 23 chr9 103737036 103737526 -14125101 + MER41B LTR ERV1 1 467 -168 2164 127 0 6 chr9 103737526 103737841 -14124786 - AluSq SINE Alu 0 313 1 2295 108 0 0 chr9 103737842 103738137 -14124490 - AluSq SINE Alu -18 295 1 3664 132 69 23 chr9 103738137 103738251 -14124376 + MER41B LTR ERV1 466 635 0 2293 107 0 0 chr9 103738294 103738592 -14124035 + AluSx SINE Alu 1 298 -14 674 172 60 0 chr9 103738702 103738818 -14123809 - FLAM_A SINE Alu -9 124 2 402 266 98 0 chr9 103738854 103738980 -14123647 + MLT1J LTR MaLR 45 145 -305 1354 173 111 72 chr9 103738980 103739413 -14123214 + LTR7 LTR ERV1 1 450 0 425 194 0 29 chr9 103739439 103739533 -14123094 - LTR33 LTR ERVL 0 521 429 1251 152 135 91 chr9 103739533 103739962 -14122665 + LTR7 LTR ERV1 1 448 -2 533 165 0 0 chr9 103739997 103740076 -14122551 + AluJb SINE Alu 204 282 -30 2178 87 3 62 chr9 103740088 103740276 -14122351 - AluSx SINE Alu -7 305 142 2626 61 0 0 chr9 103740276 103740587 -14122040 - AluY SINE Alu 0 311 1 2178 87 3 62 chr9 103740587 103740719 -14121908 - AluSx SINE Alu -170 142 4 341 290 1 40 chr9 103740751 103740875 -14121752 + MER77 LTR ERV1 24 183 -422 774 266 101 88 chr9 103740907 103741295 -14121332 + MER21B LTR ERV1 133 532 -331 4903 91 7 58 chr9 103741295 103741391 -14121236 + LTR8 LTR ERV1 1 100 -591 2388 84 10 3 chr9 103741391 103741699 -14120928 - AluSx SINE Alu -1 311 2 4903 91 7 58 chr9 103741699 103742330 -14120297 + LTR8 LTR ERV1 100 691 0 774 266 101 88 chr9 103742330 103742508 -14120119 + MER21B LTR ERV1 532 706 -157 980 241 155 66 chr9 103742513 103742688 -14119939 - LTR33 LTR ERVL -88 433 275 2244 120 10 0 chr9 103742688 103742997 -14119630 - AluSq SINE Alu -1 312 1 980 241 155 66 chr9 103742997 103743215 -14119412 - LTR33 LTR ERVL -246 275 5 375 304 33 33 chr9 103743334 103743518 -14119109 + MLT1J LTR MaLR 325 508 -3 1345 131 5 54 chr9 103743797 103744019 -14118608 + AluSg/x SINE Alu 85 295 -17 2123 123 7 0 chr9 103744080 103744398 -14118229 - AluSx SINE Alu 0 320 1 1320 215 10 34 chr9 103744407 103744705 -14117922 - AluJo SINE Alu -21 291 1 462 241 229 12 chr9 103744707 103744956 -14117671 + L1ME4a LINE L1 5817 6119 -2 2110 157 5 43 chr9 103745040 103745333 -14117294 - MLT1A1 LTR MaLR 0 365 87 2442 77 0 0 chr9 103745333 103745632 -14116995 - AluY SINE Alu -12 299 1 2110 157 5 43 chr9 103745632 103745708 -14116919 - MLT1A1 LTR MaLR -278 87 10 225 371 8 8 chr9 103746262 103746394 -14116233 + MER117 DNA MER1_type 4 135 -62 224 283 0 0 chr9 103747606 103747659 -14114968 + CT-rich Low_complexity Low_complexity 3 55 0 971 254 81 81 chr9 103748082 103748271 -14114356 - MLT1J LTR MaLR -69 442 254 1739 160 20 30 chr9 103748271 103748571 -14114056 + AluJo SINE Alu 1 297 -15 971 254 81 81 chr9 103748571 103748787 -14113840 - MLT1J LTR MaLR -256 255 37 551 296 84 26 chr9 103749046 103749425 -14113202 - L1ME LINE L1 -463 5658 5258 2391 78 3 0 chr9 103749431 103749725 -14112902 - AluY SINE Alu -16 295 1 28 0 0 0 chr9 103749961 103749989 -14112638 + AT_rich Low_complexity Low_complexity 1 28 0 315 221 110 43 chr9 103749994 103750157 -14112470 - L1ME LINE L1 -1336 4810 4637 3465 187 19 12 chr9 103750157 103750842 -14111785 + L1 LINE L1 3483 4172 -1974 2065 114 3 19 chr9 103750844 103751159 -14111468 + AluSx SINE Alu 2 311 -1 288 234 16 0 chr9 103751234 103751298 -14111329 - L1ME LINE L1 -592 5506 5442 * 2323 229 87 46 chr9 103751296 103751342 -14111285 - L1ME LINE L1 -1095 4985 4942 938 213 0 0 chr9 103751342 103751506 -14111121 - AluJo SINE Alu -2 300 137 2323 229 87 46 chr9 103751506 103752378 -14110249 - L1ME LINE L1 -1138 4942 4029 772 164 27 14 chr9 103752383 103752529 -14110098 - MLT1A1 LTR MaLR 0 365 218 2095 123 7 10 chr9 103752534 103752621 -14110006 - AluSx SINE Alu 0 372 286 213 39 0 0 chr9 103752621 103752647 -14109980 + (TTA)n Simple_repeat Simple_repeat 2 27 0 2095 123 7 10 chr9 103752647 103752932 -14109695 - AluSx SINE Alu -86 286 1 1630 187 3 23 chr9 103752933 103753232 -14109395 - AluJb SINE Alu -19 293 1 755 237 26 36 chr9 103753246 103753440 -14109187 - MLT1A1 LTR MaLR -172 193 2 4791 238 65 53 chr9 103753442 103753590 -14109037 - L1ME LINE L1 -2055 4025 3880 928 111 0 22 chr9 103753590 103753725 -14108902 - AluJo SINE Alu -169 133 2 4791 238 65 53 chr9 103753725 103754488 -14108139 - L1ME LINE L1 -2200 3880 3128 1491 221 14 0 chr9 103754488 103754778 -14107849 + AluJo SINE Alu 1 294 -18 4791 238 65 53 chr9 103754778 103754897 -14107730 - L1ME LINE L1 -2952 3128 3012 2191 87 10 24 chr9 103754897 103755207 -14107420 - AluSx SINE Alu 0 306 1 4791 238 65 53 chr9 103755207 103755442 -14107185 - L1ME LINE L1 -3068 3012 2781 2373 82 0 38 chr9 103755442 103755757 -14106870 + AluSq SINE Alu 1 303 -10 4791 238 65 53 chr9 103755757 103756473 -14106154 - L1ME LINE L1 -3299 2781 2018 2725 243 92 74 chr9 103756460 103756628 -14105999 - L1ME LINE L1 -4597 1483 1320 * 2094 123 0 0 chr9 103756628 103756940 -14105687 - AluSx SINE Alu 0 312 1 2725 243 92 74 chr9 103756940 103757010 -14105617 - L1ME LINE L1 -4760 1320 1253 2214 85 0 63 chr9 103757010 103757327 -14105300 + AluY SINE Alu 1 297 -14 2725 243 92 74 chr9 103757327 103757535 -14105092 - L1ME LINE L1 -4827 1253 1050 1827 171 0 23 chr9 103757535 103757844 -14104783 - AluJb SINE Alu -8 304 3 2725 243 92 74 chr9 103757844 103758101 -14104526 - L1ME LINE L1 -5030 1050 799 1888 145 26 22 chr9 103758101 103758412 -14104215 - AluSx SINE Alu 0 312 1 2725 243 92 74 chr9 103758412 103758984 -14103643 - L1ME LINE L1 -5281 799 270 2350 115 0 3 chr9 103758984 103759297 -14103330 - AluSx SINE Alu 0 312 1 2725 243 92 74 chr9 103759297 103759537 -14103090 - L1ME LINE L1 -5810 270 36 296 241 95 52 chr9 103760084 103760200 -14102427 - L1ME LINE L1 -5944 126 6 237 315 62 42 chr9 103760281 103760684 -14101943 - L1MEc LINE L1 -3319 2896 2486 679 265 183 25 chr9 103760767 103761161 -14101466 + MLT1H1 LTR MaLR 1 465 -90 189 0 0 0 chr9 103761161 103761182 -14101445 + (CAGCC)n Simple_repeat Simple_repeat 1 21 0 679 265 183 25 chr9 103761182 103761290 -14101337 + MLT1H1 LTR MaLR 465 555 0 9399 233 65 49 chr9 103761314 103761481 -14101146 - L1MEc LINE L1 -803 5412 5249 2101 128 0 0 chr9 103761481 103761797 -14100830 + AluSx SINE Alu 1 316 0 9399 233 65 49 chr9 103761797 103762249 -14100378 - L1MEc LINE L1 -966 5249 4806 588 129 11 0 chr9 103762249 103762342 -14100285 - L1PA16 LINE L1 -9 6157 6064 9399 233 65 49 chr9 103762342 103763431 -14099196 - L1MEc LINE L1 -1409 4806 3736 6053 82 23 0 chr9 103763431 103764507 -14098120 - L1PA14 LINE L1 0 6161 5049 9399 233 65 49 chr9 103764507 103766407 -14096220 - L1MEc LINE L1 -2479 3736 1743 2756 123 16 23 chr9 103766407 103766636 -14095991 - MSTB LTR MaLR 0 426 200 2233 108 0 10 chr9 103766636 103766941 -14095686 - AluSg SINE Alu -8 302 1 2756 123 16 23 chr9 103766941 103767140 -14095487 - MSTB LTR MaLR -226 200 1 9399 233 65 49 chr9 103767140 103767685 -14094942 - L1MEc LINE L1 -4472 1743 1208 484 300 64 72 chr9 103767741 103768941 -14093686 - L1MEc LINE L1 -4421 1975 786 5087 89 6 11 chr9 103769555 103770249 -14092378 - LTR8 LTR ERV1 -1 690 1 409 271 69 73 chr9 103770698 103770841 -14091786 - HAL1 LINE L1 -741 1766 1624 2150 102 7 16 chr9 103770841 103771144 -14091483 - AluSx SINE Alu -12 300 1 409 271 69 73 chr9 103771144 103771317 -14091310 - HAL1 LINE L1 -883 1624 1451 2243 112 3 3 chr9 103771763 103771780 -14090847 - AluSx SINE Alu -9 303 287 224 29 0 29 chr9 103771780 103771814 -14090813 + (TG)n Simple_repeat Simple_repeat 2 34 0 2243 112 3 3 chr9 103771814 103772099 -14090528 - AluSx SINE Alu -24 288 1 3496 203 70 18 chr9 103772196 103772655 -14089972 - L1ME1 LINE L1 -12 6154 5721 2308 120 0 7 chr9 103772655 103772964 -14089663 - AluSx SINE Alu -5 307 1 3496 203 70 18 chr9 103772964 103773356 -14089271 - L1ME1 LINE L1 -445 5721 5258 2099 133 17 0 chr9 103773374 103773667 -14088960 - AluSx SINE Alu -14 298 1 679 176 32 0 chr9 103773667 103773792 -14088835 - FLAM_A SINE Alu -4 129 1 2241 119 0 22 chr9 103773874 103774185 -14088442 + AluSx SINE Alu 1 304 -8 487 305 92 15 chr9 103774201 103774473 -14088154 - L1ME3A LINE L1 -278 5892 5600 313 247 82 82 chr9 103774514 103774668 -14087959 - HAL1 LINE L1 -1391 1116 960 2585 40 0 7 chr9 103774668 103774965 -14087662 + AluY SINE Alu 2 296 -15 313 247 82 82 chr9 103774965 103775101 -14087526 - HAL1 LINE L1 -1546 961 826 2067 141 6 9 chr9 103775252 103775592 -14087035 + MER1B DNA MER1_type 1 339 0 2083 120 33 3 chr9 103776106 103776407 -14086220 - AluSx SINE Alu -2 310 1 237 246 55 0 chr9 103776438 103776548 -14086079 + (TCTCTG)n Simple_repeat Simple_repeat 1 116 0 2471 83 3 0 chr9 103777282 103777584 -14085043 + AluSx SINE Alu 2 304 -8 2385 95 0 3 chr9 103778320 103778625 -14084002 + AluSq SINE Alu 1 304 -9 472 272 158 10 chr9 103779343 103779545 -14083082 + MIR SINE MIR 1 232 -30 430 278 115 56 chr9 103779618 103779906 -14082721 - MLT1I LTR MaLR 0 409 105 304 305 10 23 chr9 103780048 103780186 -14082441 + MER5A DNA MER1_type 1 145 -44 1438 130 24 5 chr9 103780231 103780439 -14082188 - AluSq SINE Alu -97 216 5 358 310 30 12 chr9 103780484 103780688 -14081939 + MIR SINE MIR 5 259 -3 2116 133 9 6 chr9 103780693 103781030 -14081597 - L1MC1 LINE L1 0 6333 5996 584 271 54 6 chr9 103781271 103781437 -14081190 - MER5B DNA MER1_type -1 177 4 604 228 161 0 chr9 103781455 103781604 -14081023 + MER5A DNA MER1_type 9 181 -8 569 175 167 0 chr9 103781609 103781729 -14080898 + AluJb SINE Alu 2 141 -171 1750 141 4 11 chr9 103781734 103782003 -14080624 + AluJo SINE Alu 11 277 -35 21 0 0 0 chr9 103782006 103782027 -14080600 + AT_rich Low_complexity Low_complexity 1 21 0 2406 97 0 6 chr9 103782141 103782501 -14080126 - AluSg SINE Alu 0 359 2 577 282 70 0 chr9 103782510 103782723 -14079904 + L2 LINE L2 1993 2220 -1094 453 210 226 0 chr9 103782783 103782907 -14079720 + MER45A DNA AcHobo 1 152 -26 545 263 253 59 chr9 103783037 103783658 -14078969 + L2 LINE L2 2340 3130 -142 2225 112 20 3 chr9 103783658 103783961 -14078666 - AluSx SINE Alu -4 308 1 545 263 253 59 chr9 103783961 103784139 -14078488 + L2 LINE L2 3130 3272 0 673 187 115 0 chr9 103784491 103784630 -14077997 - MER63 DNA MER1_type -55 781 1 2481 154 38 0 chr9 103785136 103785559 -14077068 - Tigger2 DNA MER2_type 0 2718 2280 2024 135 0 20 chr9 103785581 103785884 -14076743 + AluJb SINE Alu 1 297 -15 2605 68 0 0 chr9 103785884 103786194 -14076433 + AluY SINE Alu 1 310 -1 357 159 0 16 chr9 103786201 103786264 -14076363 - Tigger2 DNA MER2_type -2655 63 2 2225 106 3 26 chr9 103786326 103786638 -14075989 + AluSq SINE Alu 1 305 -8 576 265 91 87 chr9 103787056 103787292 -14075335 - L2 LINE L2 -1 3312 3072 2147 116 10 7 chr9 103787292 103787586 -14075041 + AluSx SINE Alu 1 295 -17 576 265 91 87 chr9 103787586 103787809 -14074818 - L2 LINE L2 -241 3072 2851 2232 124 0 3 chr9 103788249 103788556 -14074071 - AluSx SINE Alu -6 306 1 4079 205 20 34 chr9 103788582 103789194 -14073433 - L1MA9 LINE L1 -38 6274 5655 2640 113 51 17 chr9 103789194 103789608 -14073019 + MSTA LTR MaLR 1 428 0 4079 205 20 34 chr9 103789608 103790566 -14072061 - L1MA9 LINE L1 -657 5655 4725 2261 99 7 16 chr9 103790566 103790869 -14071758 + AluSq SINE Alu 1 300 -13 4079 205 20 34 chr9 103790869 103791044 -14071583 - L1MA9 LINE L1 -1587 4725 4549 * 5184 207 18 12 chr9 103791042 103791152 -14071475 + L1 LINE L1 3376 3484 -2662 2742 129 26 2 chr9 103791152 103791570 -14071057 - MSTA LTR MaLR 0 428 1 5184 207 18 12 chr9 103791570 103792668 -14069959 + L1 LINE L1 3484 4592 -1554 304 310 0 21 chr9 103792869 103793011 -14069616 + CT-rich Low_complexity Low_complexity 1 139 0 186 308 22 22 chr9 103793376 103793467 -14069160 - L3 LINE CR1 -630 947 857 * 279 279 47 0 chr9 103793459 103793545 -14069082 + MIR SINE MIR 92 181 -81 2255 121 7 0 chr9 103794040 103794347 -14068280 - AluSx SINE Alu -3 309 1 2066 124 20 3 chr9 103794718 103795017 -14067610 - AluSg SINE Alu -6 304 1 2010 160 0 3 chr9 103795685 103795998 -14066629 - AluJo SINE Alu 0 312 1 1928 101 0 8 chr9 103796465 103796722 -14065905 - AluSx SINE Alu -57 255 1 232 336 53 25 chr9 103796784 103797028 -14065599 - MLT1L LTR MaLR -363 252 2 2261 103 14 0 chr9 103797210 103797500 -14065127 - AluSx SINE Alu -18 294 1 180 221 192 10 chr9 103797525 103797629 -14064998 - L2 LINE L2 -3181 133 11 2366 83 37 0 chr9 103797865 103798165 -14064462 + AluY SINE Alu 1 311 0 462 266 9 0 chr9 103798325 103798434 -14064193 + MIR SINE MIR 44 153 -55 355 179 15 0 chr9 103798965 103799032 -14063595 + MIR SINE MIR 58 125 -137 1798 144 0 19 chr9 103799439 103799710 -14062917 + AluSx SINE Alu 41 306 -6 2422 228 57 24 chr9 103799710 103799757 -14062870 + L1MB7 LINE L1 5432 5476 -708 2300 117 0 0 chr9 103799757 103800065 -14062562 + AluSq SINE Alu 4 311 -2 2422 228 57 24 chr9 103800065 103800736 -14061891 + L1MB7 LINE L1 5476 6174 -10 314 290 129 26 chr9 103800789 103800944 -14061683 - MIR SINE MIR -1 261 91 347 314 59 0 chr9 103801007 103801125 -14061502 + MIR SINE MIR 68 192 -70 2169 111 0 3 chr9 103801297 103801586 -14061041 - AluSg SINE Alu -14 296 9 300 307 59 0 chr9 103801806 103801907 -14060720 - L2 LINE L2 -1 3271 3165 379 242 167 8 chr9 103802302 103802434 -14060193 - MIR SINE MIR -34 228 76 209 323 32 0 chr9 103802492 103802585 -14060042 + GA-rich Low_complexity Low_complexity 2 97 0 204 381 12 0 chr9 103802701 103802785 -14059842 - MER91A DNA MER1_type -40 156 72 279 257 30 10 chr9 103803006 103803107 -14059520 + (TCCA)n Simple_repeat Simple_repeat 1 103 0 383 321 78 42 chr9 103803111 103803304 -14059323 - L2 LINE L2 0 3272 3073 501 172 32 25 chr9 103803324 103803481 -14059146 + GA-rich Low_complexity Low_complexity 5 162 0 216 309 0 15 chr9 103803527 103803595 -14059032 - L2 LINE L2 -214 3058 2992 2345 97 0 7 chr9 103803626 103803934 -14058693 + AluSx SINE Alu 1 306 -6 505 117 13 0 chr9 103806036 103806113 -14056514 + MLT1A2 LTR MaLR 8 85 -289 2267 119 0 3 chr9 103806114 103806424 -14056203 + AluY SINE Alu 1 309 -2 2356 103 0 0 chr9 103806609 103806911 -14055716 + AluSx SINE Alu 11 312 0 421 175 10 41 chr9 103807065 103807134 -14055493 - LTR40b LTR ERVL -368 94 27 1740 201 24 29 chr9 103807134 103807508 -14055119 - MLT1A2 LTR MaLR -2 372 1 421 175 10 41 chr9 103807508 103807535 -14055092 - LTR40b LTR ERVL -435 27 1 1514 202 22 22 chr9 103807629 103807986 -14054641 + LTR40b LTR ERVL 106 462 0 452 351 63 34 chr9 103808293 103808403 -14054224 - MIR SINE MIR -11 251 146 2733 95 3 14 chr9 103808403 103808771 -14053856 + THE1B LTR MaLR 1 364 0 452 351 63 34 chr9 103808771 103808899 -14053728 - MIR SINE MIR -116 146 6 486 270 54 56 chr9 103809468 103809718 -14052909 - MIR SINE MIR 0 262 16 2474 80 0 0 chr9 103810237 103810537 -14052090 + AluY SINE Alu 1 300 -11 199 313 45 15 chr9 103810561 103810628 -14051999 - MIR SINE MIR -75 187 119 1191 143 16 49 chr9 103810949 103811194 -14051433 - L1MB2 LINE L1 0 6171 5935 296 355 66 0 chr9 103811656 103811808 -14050819 - MIR SINE MIR -1 261 100 2048 143 0 0 chr9 103811808 103812102 -14050525 + AluSx SINE Alu 1 294 -18 626 268 41 16 chr9 103812220 103812414 -14050213 + MIR SINE MIR 28 226 -36 983 120 0 0 chr9 103812533 103812666 -14049961 + FLAM_C SINE Alu 1 133 0 2167 121 0 16 chr9 103812679 103812993 -14049634 + AluY SINE Alu 1 309 -2 589 259 72 5 chr9 103812994 103813187 -14049440 - L2 LINE L2 -1539 1775 1570 1939 119 18 11 chr9 103813303 103813589 -14049038 + AluSx SINE Alu 1 288 -24 212 0 0 35 chr9 103813592 103813621 -14049006 + (GAAA)n Simple_repeat Simple_repeat 2 29 0 464 179 0 0 chr9 103813671 103813749 -14048878 - MER63 DNA MER1_type -310 752 675 21 57 0 0 chr9 103813994 103814029 -14048598 + AT_rich Low_complexity Low_complexity 1 35 0 1781 216 39 30 chr9 103814030 103814493 -14048134 + MLT1C LTR MaLR 1 467 0 2099 158 16 29 chr9 103814523 103814903 -14047724 - THE1C LTR MaLR 0 375 1 1693 148 8 4 chr9 103814978 103815234 -14047393 + AluJo SINE Alu 1 257 -55 2285 113 10 0 chr9 103815307 103815616 -14047011 + AluSq SINE Alu 1 312 -1 2990 112 5 0 chr9 103815974 103816402 -14046225 - LTR8 LTR ERV1 0 691 262 752 284 10 10 chr9 103816603 103816804 -14045823 - MLT1I LTR MaLR -208 201 1 266 196 36 0 chr9 103817028 103817084 -14045543 - L2 LINE L2 -5 3267 3210 * 466 308 27 67 chr9 103817083 103817307 -14045320 + L2 LINE L2 3007 3221 -51 218 179 0 0 chr9 103817328 103817386 -14045241 + (ACTG)n Simple_repeat Simple_repeat 1 58 0 2162 109 0 3 chr9 103817451 103817760 -14044867 + AluSq SINE Alu 1 308 0 386 318 68 33 chr9 103817791 103818118 -14044509 - L1M4 LINE L1 -1446 4700 4355 2215 77 3 42 chr9 103818118 103818428 -14044199 - AluY SINE Alu -13 298 1 386 318 68 33 chr9 103818428 103818499 -14044128 - L1M4 LINE L1 -1791 4355 4288 465 256 201 36 chr9 103818579 103818798 -14043829 + MIR SINE MIR 2 256 -6 440 207 43 43 chr9 103819366 103819482 -14043145 - L2 LINE L2 -1 3312 3197 2269 132 0 0 chr9 103819582 103819893 -14042734 - AluSx SINE Alu -1 311 1 1808 144 21 21 chr9 103819959 103820250 -14042377 - AluJb SINE Alu -21 291 1 306 246 33 33 chr9 103820256 103820378 -14042249 - L1MC5 LINE L1 -34 7927 7806 512 294 80 12 chr9 103820410 103820573 -14042054 - MIR SINE MIR -57 205 32 1886 141 7 46 chr9 103820582 103820888 -14041739 - AluSx SINE Alu -18 294 1 2493 75 0 28 chr9 103821551 103821871 -14040756 + AluY SINE Alu 1 311 0 1677 134 25 72 chr9 103821890 103822210 -14040417 + AluJb SINE Alu 5 309 -3 414 100 0 0 chr9 103822210 103822270 -14040357 + (GGAA)n Simple_repeat Simple_repeat 1 60 0 256 312 11 0 chr9 103823213 103823306 -14039321 + MER117 DNA MER1_type 75 168 -29 1980 146 3 26 chr9 103824010 103824312 -14038315 - AluSx SINE Alu -17 295 1 2077 140 3 10 chr9 103824316 103824624 -14038003 - AluSx SINE Alu -6 306 1 1804 141 32 72 chr9 103825323 103825700 -14036927 - L1M3 LINE L1 -361 5810 5449 2052 155 3 0 chr9 103825723 103826027 -14036600 - AluSx SINE Alu -7 305 1 953 274 139 29 chr9 103827585 103828001 -14034626 - L2 LINE L2 0 3313 2852 2263 112 0 7 chr9 103828040 103828345 -14034282 - AluSg SINE Alu -7 303 1 707 289 64 21 chr9 103828350 103828723 -14033904 - L1ME3A LINE L1 -198 5972 5584 251 324 0 0 chr9 103828725 103828796 -14033831 - MIR SINE MIR -101 161 91 1782 135 0 0 chr9 103829482 103829726 -14032901 + AluSx SINE Alu 1 244 -68 339 277 50 0 chr9 103830271 103830372 -14032255 - MIR SINE MIR -77 185 80 422 177 51 0 chr9 103831137 103831216 -14031411 + MER41B LTR ERV1 553 635 0 2316 107 0 0 chr9 103831259 103831557 -14031070 + AluSx SINE Alu 1 298 -14 702 176 59 0 chr9 103831664 103831783 -14030844 - FLAM_A SINE Alu -6 127 2 367 265 99 1 chr9 103831819 103831945 -14030682 + MLT1J LTR MaLR 45 144 -302 1065 186 109 81 chr9 103831945 103832376 -14030251 + LTR7 LTR ERV1 1 443 -7 387 268 73 60 chr9 103833541 103833935 -14028692 + MLT1H LTR MaLR 53 549 0 2031 141 16 3 chr9 103834023 103834329 -14028298 + AluSx SINE Alu 1 310 -2 1325 152 144 0 chr9 103834332 103834595 -14028032 - LTR28 LTR ERV1 -719 301 1 328 247 155 0 chr9 103834951 103835048 -14027579 - L1ME4a LINE L1 -193 5928 5817 1344 221 10 34 chr9 103835050 103835344 -14027283 + AluJo SINE Alu 1 287 -25 2073 129 7 0 chr9 103835357 103835651 -14026976 + AluSx SINE Alu 1 296 -16 182 282 120 51 chr9 103835980 103836097 -14026530 + MIR SINE MIR 47 171 -91 696 226 53 29 chr9 103836257 103836465 -14026162 - L1 LINE L1 -2451 3695 3483 279 221 110 43 chr9 103836465 103836628 -14025999 + L1ME LINE L1 4637 4810 -1336 354 260 54 125 chr9 103836633 103836897 -14025730 + L1ME LINE L1 5011 5237 -909 2141 90 3 10 chr9 103836897 103837186 -14025441 + AluY SINE Alu 1 287 -24 354 260 54 125 chr9 103837186 103837328 -14025299 + L1ME LINE L1 5237 5388 -758 320 322 61 16 chr9 103837343 103837588 -14025039 + L1ME LINE L1 5403 5658 -463 2095 256 25 55 chr9 103838048 103838805 -14023822 + L1M4 LINE L1 3213 3940 -2206 949 111 0 22 chr9 103838805 103838940 -14023687 + FLAM_C SINE Alu 2 133 0 2095 256 25 55 chr9 103838940 103839088 -14023539 + L1M4 LINE L1 3940 4091 -2055 669 231 35 35 chr9 103839090 103839289 -14023338 + MLT1A1 LTR MaLR 2 200 -165 563 273 10 73 chr9 103839861 103840066 -14022561 - MIR3 SINE MIR -3 205 14 503 246 11 27 chr9 103840623 103840806 -14021821 + AluSx SINE Alu 2 181 -131 225 273 45 0 chr9 103891108 103891174 -13971453 + L2 LINE L2 3176 3244 -28 800 214 106 51 chr9 103891174 103891344 -13971283 - MLT2F LTR ERVL -373 290 98 2338 108 0 0 chr9 103891344 103891640 -13970987 - AluSx SINE Alu -16 296 1 800 214 106 51 chr9 103891640 103891744 -13970883 - MLT2F LTR ERVL -565 98 1 1055 313 11 39 chr9 103891753 103892052 -13970575 - ERVL LTR ERVL -3038 2726 2443 2284 114 3 13 chr9 103892052 103892368 -13970259 - AluSp SINE Alu 0 313 1 1055 313 11 39 chr9 103892368 103892534 -13970093 - ERVL LTR ERVL -3321 2443 2274 346 266 14 58 chr9 103892531 103892562 -13970065 - ERVL LTR ERVL -3814 1182 1151 * 1771 193 20 0 chr9 103892562 103892857 -13969770 - AluJb SINE Alu -11 301 1 346 266 14 58 chr9 103892857 103892964 -13969663 - ERVL LTR ERVL -3845 1151 1050 883 349 46 43 chr9 103893159 103893947 -13968680 - ERVL LTR ERVL -4206 790 1 1175 266 42 18 chr9 103893947 103894278 -13968349 - LTR16C LTR ERVL 0 491 153 677 198 76 52 chr9 103894480 103894652 -13967975 - MIR SINE MIR -15 247 72 216 220 352 44 chr9 103894824 103894915 -13967712 + L2 LINE L2 3154 3272 0 286 250 65 11 chr9 103894935 103895027 -13967600 + MIR SINE MIR 44 140 -68 305 280 47 33 chr9 103895045 103895195 -13967432 + L2 LINE L2 878 1029 -2285 738 243 86 126 chr9 103895215 103895506 -13967121 - MLT1D LTR MaLR 0 505 204 1934 142 0 19 chr9 103895506 103895824 -13966803 - AluSx SINE Alu 0 312 1 738 243 86 126 chr9 103895824 103895963 -13966664 - MLT1D LTR MaLR -301 204 97 2405 98 3 19 chr9 103895963 103896280 -13966347 - AluSx SINE Alu 0 312 1 738 243 86 126 chr9 103896280 103896374 -13966253 - MLT1D LTR MaLR -408 97 1 696 314 82 30 chr9 103896381 103896808 -13965819 + L2 LINE L2 1134 1582 -1732 242 29 29 0 chr9 103896808 103896843 -13965784 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 1453 154 63 16 chr9 103896851 103897104 -13965523 - AluSg SINE Alu -41 269 5 2298 109 10 0 chr9 103897985 103898287 -13964340 - AluSx SINE Alu -7 305 1 21 0 0 0 chr9 103898288 103898309 -13964318 + AT_rich Low_complexity Low_complexity 1 21 0 971 172 15 15 chr9 103898360 103898564 -13964063 - L1MC2 LINE L1 -18 6326 6123 1446 163 3 44 chr9 103898626 103898921 -13963706 - L1MC2 LINE L1 -248 6096 5814 524 106 303 0 chr9 103898916 103898952 -13963675 - L1MB3 LINE L1 0 6183 6159 * 2040 121 36 0 chr9 103898952 103899233 -13963394 - AluSx SINE Alu -21 291 1 524 106 303 0 chr9 103899233 103899338 -13963289 - L1MB3 LINE L1 -24 6159 5999 * 1264 169 13 0 chr9 103899321 103899546 -13963081 - L1MC2 LINE L1 -494 5850 5623 470 249 55 86 chr9 103899601 103899654 -13962973 - MIR SINE MIR -35 227 174 2044 127 0 7 chr9 103899654 103899958 -13962669 + AluSx SINE Alu 1 302 0 470 249 55 86 chr9 103899958 103900105 -13962522 - MIR SINE MIR -88 174 33 838 230 49 20 chr9 103901715 103901919 -13960708 + MIR SINE MIR 1 210 -52 270 264 19 71 chr9 103902278 103902433 -13960194 - LTR16C LTR ERVL -47 444 298 413 287 64 95 chr9 103902790 103903149 -13959478 + L2 LINE L2 2884 3231 -41 364 310 7 35 chr9 103903158 103903300 -13959327 + MIR SINE MIR 115 252 -10 370 189 197 25 chr9 103903390 103903512 -13959115 - MIR3 SINE MIR -62 146 4 204 111 0 0 chr9 103903520 103903556 -13959071 + (TC)n Simple_repeat Simple_repeat 2 37 0 1900 85 16 0 chr9 103903652 103903899 -13958728 - AluSq SINE Alu -62 251 1 335 268 10 31 chr9 103903911 103904008 -13958619 + MIR SINE MIR 40 134 -74 266 299 0 0 chr9 103904036 103904103 -13958524 + MER69 DNA AcHobo 2 68 -2458 357 286 42 17 chr9 103904298 103904417 -13958210 - MIR SINE MIR -62 146 25 339 250 297 0 chr9 103904830 103904978 -13957649 + L2 LINE L2 2869 3060 -212 396 0 0 0 chr9 103904979 103905023 -13957604 + (CA)n Simple_repeat Simple_repeat 1 44 0 234 0 0 0 chr9 103905022 103905048 -13957579 + (GA)n Simple_repeat Simple_repeat 2 27 0 * 605 294 45 0 chr9 103905132 103905333 -13957294 - MIR SINE MIR -50 212 3 405 169 169 17 chr9 103905574 103905692 -13956935 + MER69 DNA AcHobo 2388 2523 -3 180 314 162 0 chr9 103905834 103905939 -13956688 + L2 LINE L2 3151 3272 0 189 107 0 0 chr9 103905943 103905971 -13956656 + (TGAA)n Simple_repeat Simple_repeat 2 29 0 1836 150 31 17 chr9 103906035 103906322 -13956305 + AluJb SINE Alu 1 291 -21 532 348 68 9 chr9 103906981 103907202 -13955425 + MIR SINE MIR 15 248 -14 443 227 91 0 chr9 103907212 103907344 -13955283 - LTR33A LTR ERVL 0 523 380 336 306 61 50 chr9 103907362 103907454 -13955173 + MIR SINE MIR 66 155 -107 2356 111 0 0 chr9 103907454 103907761 -13954866 - AluSx SINE Alu -5 307 1 2383 79 0 0 chr9 103907765 103908055 -13954572 - AluY SINE Alu -21 290 1 336 306 61 50 chr9 103908055 103908137 -13954490 + MIR SINE MIR 157 247 -15 647 246 105 35 chr9 103908166 103908337 -13954290 - MIR SINE MIR -76 186 4 325 298 53 9 chr9 103908507 103908621 -13954006 + MIR SINE MIR 28 146 -116 1357 176 80 64 chr9 103908898 103909348 -13953279 + LTR33A LTR ERVL 59 515 -8 194 277 0 21 chr9 103909687 103909734 -13952893 + L2 LINE L2 3205 3250 -22 326 222 56 44 chr9 103910255 103910345 -13952282 - MIR3 SINE MIR -22 186 96 258 116 0 0 chr9 103910961 103911004 -13951623 + (CA)n Simple_repeat Simple_repeat 1 43 0 337 247 81 3 chr9 103911464 103911579 -13951048 - MIR3 SINE MIR -41 167 44 2319 115 0 6 chr9 103911579 103911891 -13950736 - AluSx SINE Alu -2 310 1 337 247 81 3 chr9 103911891 103911906 -13950721 - MIR3 SINE MIR -164 44 32 1965 153 0 3 chr9 103912117 103912412 -13950215 - AluJb SINE Alu -8 304 11 250 247 14 14 chr9 103912688 103912761 -13949866 + CT-rich Low_complexity Low_complexity 4 76 0 2094 226 69 72 chr9 103912895 103912960 -13949667 + L1MC4 LINE L1 6487 6551 -1491 2266 115 0 3 chr9 103912960 103913274 -13949353 + AluSq SINE Alu 1 313 0 2205 121 0 3 chr9 103913275 103913573 -13949054 + AluSx SINE Alu 1 297 -15 2094 226 69 72 chr9 103913573 103914285 -13948342 + L1MC4 LINE L1 6550 7264 -778 326 209 0 0 chr9 103914292 103914359 -13948268 + FLAM SINE Alu 62 128 -5 797 246 71 69 chr9 103914364 103914786 -13947841 + HAL1 LINE L1 2036 2458 -49 23 0 0 0 chr9 103914819 103914842 -13947785 + AT_rich Low_complexity Low_complexity 1 23 0 2145 127 0 0 chr9 103914856 103915155 -13947472 + AluSx SINE Alu 1 299 -13 609 142 0 0 chr9 103915351 103915361 -13947266 + (GAA)n Simple_repeat Simple_repeat 2 11 -96 2197 132 0 0 chr9 103915361 103915649 -13946978 + AluSc SINE Alu 1 288 -21 609 142 0 0 chr9 103915649 103915744 -13946883 + (GAA)n Simple_repeat Simple_repeat 10 107 0 1993 103 71 14 chr9 103915845 103916127 -13946500 - AluSq SINE Alu -10 303 6 457 331 10 19 chr9 103916362 103916546 -13946081 - MIR SINE MIR -62 146 10 2116 96 17 17 chr9 103917062 103917354 -13945273 - AluSx SINE Alu -20 292 1 437 211 230 46 chr9 103917519 103917539 -13945088 - L2 LINE L2 -2 3311 3296 2321 96 10 0 chr9 103917539 103917841 -13944786 + AluSg1 SINE Alu 1 305 -4 437 211 230 46 chr9 103917841 103917972 -13944655 - L2 LINE L2 -17 3296 3132 185 94 31 0 chr9 103918116 103918148 -13944479 + CT-rich Low_complexity Low_complexity 6 38 0 1892 179 0 0 chr9 103918184 103918485 -13944142 + AluSx SINE Alu 1 301 -11 2034 113 29 0 chr9 103918603 103918905 -13943722 + AluSg SINE Alu 1 310 0 1170 259 31 58 chr9 103918934 103919351 -13943276 - MLT1I LTR MaLR -2 407 2 1563 257 13 18 chr9 103919466 103919490 -13943137 + L1MB8 LINE L1 2894 2917 -3229 2194 123 0 16 chr9 103919490 103919785 -13942842 + AluSx SINE Alu 1 292 -20 432 0 0 0 chr9 103919785 103919833 -13942794 + (TA)n Simple_repeat Simple_repeat 1 48 0 2194 123 0 16 chr9 103919833 103919853 -13942774 + AluSx SINE Alu 292 311 -1 1563 257 13 18 chr9 103919853 103920208 -13942419 + L1MB8 LINE L1 2917 3272 -2874 2267 112 0 0 chr9 103920208 103920512 -13942115 + AluY SINE Alu 1 304 -7 1563 257 13 18 chr9 103920512 103920535 -13942092 + L1MB8 LINE L1 3272 3294 -2852 2174 149 3 0 chr9 103920535 103920844 -13941783 + AluJo SINE Alu 3 312 0 1563 257 13 18 chr9 103920844 103920996 -13941631 + L1MB8 LINE L1 3294 3447 -2699 1073 82 0 0 chr9 103920997 103921143 -13941484 + L1PA14 LINE L1 6015 6160 -1 2479 82 0 0 chr9 103921194 103921499 -13941128 - AluY SINE Alu -6 305 1 2185 131 0 0 chr9 103921604 103921901 -13940726 - AluSx SINE Alu -15 297 1 2081 142 0 13 chr9 103921901 103922203 -13940424 - AluSx SINE Alu -14 298 1 1649 244 17 17 chr9 103922590 103923054 -13939573 + L1MB8 LINE L1 3437 3900 -2246 563 56 0 0 chr9 103923055 103923126 -13939501 - Alu SINE Alu -6 305 235 4073 217 54 49 chr9 103923126 103923615 -13939012 + L1MB8 LINE L1 3882 4367 -1799 2103 109 10 26 chr9 103923615 103923928 -13938699 + AluY SINE Alu 1 308 -3 4073 217 54 49 chr9 103923928 103925134 -13937493 + L1MB8 LINE L1 4367 5599 -567 1386 147 100 13 chr9 103925133 103925433 -13937194 + L1MB8 LINE L1 5847 6172 -6 * 404 212 119 42 chr9 103925712 103925830 -13936797 + MER96 DNA MER1_type? 6 132 -43 485 188 11 122 chr9 103925836 103925886 -13936741 - L1MB4 LINE L1 0 6180 6126 1933 99 18 3 chr9 103925886 103926227 -13936400 - AluSc SINE Alu 0 309 1 485 188 11 122 chr9 103926227 103926315 -13936312 - L1MB4 LINE L1 -54 6126 6064 1773 189 0 10 chr9 103926315 103926647 -13935980 - AluJb SINE Alu 0 312 1 485 188 11 122 chr9 103926647 103926688 -13935939 - L1MB4 LINE L1 -116 6064 6020 272 330 84 29 chr9 103927330 103927540 -13935087 - MIR3 SINE MIR -20 242 5 530 261 42 26 chr9 103927957 103928112 -13934515 + MIR SINE MIR 5 161 -63 341 277 50 59 chr9 103928238 103928440 -13934187 - L2 LINE L2 -33 3239 3040 235 378 39 0 chr9 103928574 103928701 -13933926 - L2 LINE L2 -232 3040 2909 277 203 47 0 chr9 103929180 103929244 -13933383 + MIR SINE MIR 53 119 -89 275 296 37 19 chr9 103929348 103929456 -13933171 + MIR SINE MIR 37 146 -62 2129 125 3 0 chr9 103929515 103929826 -13932801 + AluSq SINE Alu 1 312 -1 388 283 100 0 chr9 103929990 103930110 -13932517 + MER94 DNA DNA 2 133 -1 249 264 0 0 chr9 103931286 103931339 -13931288 + MER63 DNA MER1_type 1010 1062 0 1906 73 4 0 chr9 103931366 103931611 -13931016 + AluSx SINE Alu 59 304 -8 268 414 9 0 chr9 103931816 103931927 -13930700 - MIR3 SINE MIR -1 207 96 455 260 27 108 chr9 103931952 103932058 -13930569 + MIR SINE MIR 9 122 -140 1923 158 0 10 chr9 103932058 103932368 -13930259 - AluJo SINE Alu -5 307 1 1882 142 7 7 chr9 103932376 103932693 -13929934 - AluSx SINE Alu 0 312 1 455 260 27 108 chr9 103932693 103932835 -13929792 + MIR SINE MIR 129 245 -17 419 171 0 12 chr9 103933025 103933107 -13929520 - MER63 DNA MER1_type -312 750 44 1532 135 15 42 chr9 103933116 103933375 -13929252 - AluSx SINE Alu 0 312 61 1799 158 20 0 chr9 103933407 103933705 -13928922 + AluSx SINE Alu 1 304 -8 2427 75 0 0 chr9 103933729 103934035 -13928592 - AluY SINE Alu -5 306 1 3942 155 28 26 chr9 103934102 103934768 -13927859 - MER49 LTR ERV1 -9 914 244 1941 138 10 0 chr9 103934768 103935057 -13927570 - AluSx SINE Alu -20 292 1 3942 155 28 26 chr9 103935057 103935133 -13927494 - MER49 LTR ERV1 -679 244 170 1754 144 7 14 chr9 103935144 103935451 -13927176 + AluSx SINE Alu 11 315 0 300 273 25 156 chr9 103935501 103935739 -13926888 + MIR SINE MIR 56 262 0 436 313 27 7 chr9 103935780 103935930 -13926697 - MIR SINE MIR -89 173 21 1493 167 0 85 chr9 103936269 103936586 -13926041 - AluJo SINE Alu -17 295 6 1934 146 6 16 chr9 103937286 103937422 -13925205 + AluJb SINE Alu 1 137 -175 1999 122 10 0 chr9 103937422 103937710 -13924917 + AluSx SINE Alu 3 293 -19 1934 146 6 16 chr9 103937710 103937888 -13924739 + AluJb SINE Alu 137 312 0 182 241 37 19 chr9 103937889 103937943 -13924684 + MIR SINE MIR 83 137 -125 2302 87 0 0 chr9 103938179 103938477 -13924150 - AluSx SINE Alu -14 298 1 335 161 0 32 chr9 103938477 103938539 -13924088 + MER94 DNA DNA 52 111 -23 341 328 26 0 chr9 103938563 103938679 -13923948 - MER94 DNA DNA -14 120 2 260 309 75 0 chr9 103939436 103939530 -13923097 + MIR SINE MIR 110 210 -52 185 225 38 45 chr9 103939602 103939705 -13922922 + MIR SINE MIR 6 107 -101 256 278 26 0 chr9 103940073 103940190 -13922437 - MIR SINE MIR -61 147 53 195 293 121 40 chr9 103940339 103940438 -13922189 + L2 LINE L2 3184 3290 -23 2059 117 0 3 chr9 103940475 103940775 -13921852 - AluSx SINE Alu -13 299 1 327 228 166 21 chr9 103940801 103940946 -13921681 + L1MC4a LINE L1 5793 5958 -1850 226 245 0 0 chr9 103940951 103941000 -13921627 + (CATA)n Simple_repeat Simple_repeat 4 52 0 330 336 26 0 chr9 103941603 103941719 -13920908 + MER94 DNA DNA 2 120 -14 285 221 65 13 chr9 103941904 103941981 -13920646 + MIR SINE MIR 110 190 -72 2115 114 7 0 chr9 103942591 103942888 -13919739 - AluSx SINE Alu -13 299 1 465 275 28 21 chr9 103943041 103943183 -13919444 + MIR SINE MIR 40 182 -80 573 294 90 21 chr9 103943392 103943507 -13919120 + L2 LINE L2 3003 3109 -204 2436 60 0 0 chr9 103943507 103943808 -13918819 - AluY SINE Alu -10 301 1 573 294 90 21 chr9 103943808 103943981 -13918646 + L2 LINE L2 3109 3311 -2 299 269 12 131 chr9 103944344 103944455 -13918172 + MIR SINE MIR 9 97 -165 1641 158 0 4 chr9 103944455 103944721 -13917906 - AluJo SINE Alu -47 265 1 299 269 12 131 chr9 103944721 103944769 -13917858 + MIR SINE MIR 97 149 -113 199 341 33 11 chr9 103945206 103945297 -13917330 + L2 LINE L2 3168 3260 -12 206 143 0 71 chr9 103945456 103945498 -13917129 + MIR SINE MIR 113 151 -57 24 0 0 0 chr9 103945560 103945584 -13917043 + GC_rich Low_complexity Low_complexity 1 24 0 206 214 29 29 chr9 103945594 103945697 -13916930 + (CGG)n Simple_repeat Simple_repeat 3 105 0 40 91 0 0 chr9 103945832 103945942 -13916685 + GC_rich Low_complexity Low_complexity 1 110 0 221 356 61 9 chr9 103947679 103947794 -13914833 - MIR SINE MIR -122 140 20 291 295 132 16 chr9 103947831 103947960 -13914667 - MIR SINE MIR -33 229 86 2053 96 0 24 chr9 103947989 103948310 -13914317 - AluSx SINE Alu 0 314 1 648 267 109 5 chr9 103948317 103948538 -13914089 - MIR SINE MIR -12 250 7 434 220 20 10 chr9 103948613 103948713 -13913914 - MIR SINE MIR -148 114 14 293 283 40 10 chr9 103951042 103951141 -13911486 + MIR SINE MIR 113 214 -48 2018 111 0 33 chr9 103952145 103952451 -13910176 + AluSx SINE Alu 14 309 -3 1022 222 9 0 chr9 103952601 103952822 -13909805 + L1MB5 LINE L1 5922 6144 -30 2390 71 0 0 chr9 103952851 103953147 -13909480 + AluSg SINE Alu 1 296 -14 291 242 0 0 chr9 103953174 103953240 -13909387 - MIR SINE MIR -60 148 83 468 289 30 0 chr9 103953828 103953963 -13908664 - MIR SINE MIR -15 247 109 423 325 26 7 chr9 103954192 103954343 -13908284 + L2 LINE L2 3116 3269 -3 253 296 19 83 chr9 103955914 103956022 -13906605 - L2 LINE L2 0 3272 3172 613 299 95 17 chr9 103956670 103956911 -13905716 - MIR SINE MIR 0 262 3 1732 67 63 17 chr9 103956987 103957226 -13905401 - AluSq SINE Alu -17 296 47 261 125 0 42 chr9 103957343 103957391 -13905236 + L2 LINE L2 3217 3262 -10 1063 157 108 5 chr9 103958062 103958266 -13904361 - MER45C DNA AcHobo 0 953 729 627 256 200 11 chr9 103958253 103958552 -13904075 - MER45C DNA AcHobo -552 401 4 * 494 326 79 9 chr9 103959062 103959277 -13903350 - MIR SINE MIR -13 249 20 195 383 26 7 chr9 103959587 103959741 -13902886 + MIR SINE MIR 90 246 -16 399 307 99 14 chr9 103960319 103960531 -13902096 - MIR SINE MIR -32 230 1 314 218 25 0 chr9 103960720 103960827 -13901800 - MIR SINE MIR -64 144 80 343 333 57 0 chr9 103962007 103962130 -13900497 - MIR SINE MIR -99 163 34 415 246 216 0 chr9 103962438 103962572 -13900055 + MER117 DNA MER1_type 1 163 -34 253 261 15 0 chr9 103962898 103962963 -13899664 + MIR SINE MIR 70 135 -73 2086 127 0 3 chr9 103964772 103965072 -13897555 + AluSx SINE Alu 1 299 -13 1636 230 30 0 chr9 103965612 103965942 -13896685 + MER7A DNA MER2_type 9 346 0 247 271 14 0 chr9 103966340 103966410 -13896217 - MIR SINE MIR -120 142 72 189 316 11 42 chr9 103966574 103966669 -13895958 - MIR3 SINE MIR -46 162 71 2346 83 3 3 chr9 103966899 103967211 -13895416 - AluSx SINE Alu 0 312 1 356 305 48 32 chr9 103967392 103967579 -13895048 + L2 LINE L2 3118 3307 -6 1697 138 14 7 chr9 103968392 103968668 -13893959 - AluJb SINE Alu -2 310 33 2249 107 7 0 chr9 103969098 103969408 -13893219 - AluSx SINE Alu 0 312 1 1022 236 45 68 chr9 103969666 103970048 -13892579 - MLT1C LTR MaLR -1 466 94 286 164 73 0 chr9 103970821 103970876 -13891751 + L2 LINE L2 3249 3307 -6 183 286 0 29 chr9 103971147 103971217 -13891410 + MIR SINE MIR 21 88 -120 247 318 53 35 chr9 103971239 103971409 -13891218 + L2 LINE L2 2834 3006 -266 2049 122 3 0 chr9 103971676 103971979 -13890648 + AluSx SINE Alu 1 304 -8 271 252 130 41 chr9 103972432 103972555 -13890072 + MIR SINE MIR 39 172 -90 741 234 107 15 chr9 103973358 103973563 -13889064 + MIR SINE MIR 13 236 -26 358 226 108 10 chr9 103973568 103973670 -13888957 - MIR SINE MIR -70 138 27 229 269 120 9 chr9 103974382 103974490 -13888137 + MIR SINE MIR 25 144 -118 282 307 65 24 chr9 103974918 103975098 -13887529 + MIR SINE MIR 5 182 -64 1972 149 7 0 chr9 103975152 103975448 -13887179 + AluSx SINE Alu 1 298 -14 189 0 0 0 chr9 103975875 103975896 -13886731 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 1876 118 0 57 chr9 103975896 103976193 -13886434 - AluSx SINE Alu -32 280 1 472 315 20 75 chr9 103976197 103976451 -13886176 - MIR SINE MIR -7 255 16 850 218 6 0 chr9 103976589 103976754 -13885873 - FRAM SINE Alu -10 166 1 459 0 0 0 chr9 103976797 103976848 -13885779 + (CA)n Simple_repeat Simple_repeat 1 51 0 274 174 87 29 chr9 103976957 103977026 -13885601 + MIR SINE MIR 109 181 -81 413 265 0 0 chr9 103977391 103977489 -13885138 - MIR3 SINE MIR -30 178 81 223 342 105 35 chr9 103978301 103978558 -13884069 + L2 LINE L2 2913 3187 -85 313 358 20 14 chr9 103978668 103978816 -13883811 - MIR SINE MIR 0 262 114 2081 110 3 0 chr9 103978954 103979259 -13883368 + AluSp SINE Alu 1 306 0 545 324 139 9 chr9 103980755 103980971 -13881656 + MIR SINE MIR 13 256 -6 282 346 90 8 chr9 103981328 103981461 -13881166 - L2 LINE L2 -4 3268 3125 252 327 73 9 chr9 103981572 103981682 -13880945 - MIR SINE MIR -70 192 76 1360 124 0 0 chr9 103981693 103981879 -13880748 + AluSx SINE Alu 1 186 -126 834 80 0 0 chr9 103982004 103982116 -13880511 + AluSx SINE Alu 184 295 -15 373 348 54 22 chr9 103983129 103983353 -13879274 + MIR SINE MIR 32 262 0 264 306 65 46 chr9 103983453 103983561 -13879066 + MIR SINE MIR 44 153 -55 280 285 24 65 chr9 103984726 103984853 -13877774 + MIR SINE MIR 30 150 -61 349 252 205 16 chr9 103984925 103985052 -13877575 - MIR SINE MIR -25 237 87 360 269 100 23 chr9 103985632 103985762 -13876865 + MIR SINE MIR 20 159 -103 253 208 0 19 chr9 103985801 103985854 -13876773 + CT-rich Low_complexity Low_complexity 1 52 0 768 292 19 5 chr9 103986309 103986518 -13876109 + MIR SINE MIR 51 262 0 207 209 47 0 chr9 103986691 103986734 -13875893 - MIR SINE MIR -162 100 56 234 270 0 0 chr9 103987404 103987467 -13875160 - MER116 DNA Mariner -1 79 17 251 276 65 24 chr9 103988139 103988262 -13874365 - LTR16A1 LTR ERVL -1 456 329 459 259 9 9 chr9 103989378 103989494 -13873133 + MIR SINE MIR 50 165 -97 261 274 186 0 chr9 103989715 103989817 -13872810 - L3 LINE CR1 -30 1547 1427 216 259 19 0 chr9 103990023 103990077 -13872550 - L3 LINE CR1 -177 1400 1346 287 323 167 0 chr9 103990547 103990745 -13871882 - L2 LINE L2 -37 3235 3005 593 264 16 42 chr9 103990987 103991180 -13871447 + MER91A DNA MER1_type 1 188 -8 683 278 66 14 chr9 103991991 103992203 -13870424 + MIR SINE MIR 36 258 -4 2258 116 3 0 chr9 103992882 103993193 -13869434 + AluSx SINE Alu 1 312 0 206 343 128 23 chr9 103993546 103993811 -13868816 - L2 LINE L2 -534 2780 2488 668 255 91 10 chr9 103995637 103995845 -13866782 - MIR SINE MIR -21 241 17 2267 82 0 13 chr9 103995979 103996285 -13866342 + AluSq SINE Alu 1 302 -11 233 340 48 0 chr9 103997036 103997139 -13865488 - MIR3 SINE MIR -7 201 94 200 345 112 9 chr9 103997185 103997301 -13865326 + MIR SINE MIR 117 244 -18 483 342 59 5 chr9 103997748 103997935 -13864692 + MIR SINE MIR 47 243 -19 1835 110 53 4 chr9 103998214 103998495 -13864132 - AluSx SINE Alu -17 295 1 265 253 55 33 chr9 103998932 103999023 -13863604 + MIR SINE MIR 79 171 -91 1925 108 21 21 chr9 103999308 103999595 -13863032 - AluSg SINE Alu -23 287 1 223 384 53 40 chr9 103999736 103999887 -13862740 - L2 LINE L2 -40 3273 3121 262 293 198 0 chr9 104000447 104000563 -13862064 - MIR SINE MIR 0 262 124 2085 120 30 0 chr9 104000970 104001270 -13861357 - AluSx SINE Alu -3 309 1 180 125 0 0 chr9 104001983 104002015 -13860612 + (TCTCTG)n Simple_repeat Simple_repeat 3 34 0 1031 139 35 23 chr9 104002061 104002077 -13860550 - FRAM SINE Alu -136 176 162 249 33 0 0 chr9 104002077 104002107 -13860520 + (TGG)n Simple_repeat Simple_repeat 1 30 0 1031 139 35 23 chr9 104002107 104002262 -13860365 - FRAM SINE Alu -150 162 3 2106 121 26 0 chr9 104002264 104002569 -13860058 - AluSq SINE Alu 0 313 1 427 278 65 16 chr9 104003426 104003610 -13859017 + MIR SINE MIR 45 242 -20 273 257 18 64 chr9 104004202 104004311 -13858316 + MIR SINE MIR 21 124 -84 1752 103 152 4 chr9 104004859 104005122 -13857505 - AluSx SINE Alu 0 302 1 4562 161 22 37 chr9 104005126 104005857 -13856770 - L1PA16 LINE L1 0 6166 5425 1610 201 17 0 chr9 104005857 104006146 -13856481 - AluJb SINE Alu -18 294 1 4562 161 22 37 chr9 104006146 104006269 -13856358 - L1PA16 LINE L1 -741 5425 5302 2253 113 3 0 chr9 104006269 104006580 -13856047 - AluSx SINE Alu 0 312 1 2108 124 20 0 chr9 104006587 104006893 -13855734 - AluSx SINE Alu 0 312 1 4562 161 22 37 chr9 104006893 104007523 -13855104 - L1PA16 LINE L1 -870 5296 4680 180 0 0 0 chr9 104007960 104007980 -13854647 + (TGAA)n Simple_repeat Simple_repeat 2 21 0 707 209 0 43 chr9 104008420 104008559 -13854068 + FLAM_A SINE Alu 1 133 0 361 315 92 0 chr9 104008772 104008902 -13853725 - MIR SINE MIR -40 222 81 426 271 30 15 chr9 104009629 104009762 -13852865 - MIR3 SINE MIR -45 163 29 426 339 176 4 chr9 104010649 104010894 -13851733 - L2 LINE L2 0 3272 2986 205 94 0 0 chr9 104011797 104011829 -13850798 + MIR SINE MIR 110 141 -121 211 161 129 0 chr9 104012394 104012461 -13850166 + MIR SINE MIR 45 129 -79 2399 71 0 0 chr9 104012502 104012798 -13849829 + AluSx SINE Alu 1 296 -16 399 250 0 65 chr9 104014599 104014723 -13847904 - L2 LINE L2 -1 3312 3197 355 250 77 10 chr9 104014711 104014815 -13847812 - MIR SINE MIR -75 187 77 * 182 292 108 33 chr9 104015486 104015606 -13847021 - L2 LINE L2 -235 3037 2909 211 346 39 0 chr9 104016563 104016641 -13845986 - MIR3 SINE MIR -47 161 81 187 181 0 139 chr9 104018292 104018364 -13844263 - L2 LINE L2 -40 3232 3171 2080 107 20 10 chr9 104018590 104018888 -13843739 + AluSx SINE Alu 1 301 -11 346 189 21 53 chr9 104018929 104019024 -13843603 - MIR SINE MIR -108 154 63 184 286 153 10 chr9 104019983 104020081 -13842546 - MIR SINE MIR -117 145 34 227 317 73 24 chr9 104021241 104021364 -13841263 + MER5A DNA MER1_type 39 167 -22 * 305 300 45 18 chr9 104021256 104021366 -13841261 - MER5B DNA MER1_type -47 131 19 2265 96 0 3 chr9 104021383 104021686 -13840941 - AluSg SINE Alu -8 302 1 180 287 23 69 chr9 104021692 104021779 -13840848 - L3 LINE CR1 -87 1490 1408 379 168 32 16 chr9 104021833 104021958 -13840669 + (TGGA)n Simple_repeat Simple_repeat 1 127 0 242 303 128 0 chr9 104023244 104023353 -13839274 - L2 LINE L2 0 3272 3150 828 151 0 0 chr9 104023437 104023563 -13839064 + FLAM_C SINE Alu 1 126 -17 2139 129 7 0 chr9 104023567 104023876 -13838751 + AluSx SINE Alu 1 311 -1 2184 87 45 0 chr9 104024336 104024624 -13838003 + AluSx SINE Alu 1 301 -11 260 238 0 32 chr9 104024683 104024746 -13837881 + MER5A DNA MER1_type 58 118 -71 209 265 88 59 chr9 104024706 104024808 -13837819 - L3 LINE CR1 -80 1497 1393 * 2061 251 47 30 chr9 104025073 104025579 -13837048 - L1ME3 LINE L1 -204 5958 5422 2107 128 0 13 chr9 104025579 104025885 -13836742 - AluSx SINE Alu -5 307 6 2061 251 47 30 chr9 104025885 104026243 -13836384 - L1ME3 LINE L1 -740 5422 5071 479 262 145 40 chr9 104026258 104026441 -13836186 + MIR SINE MIR 2 205 -57 1506 128 0 0 chr9 104026629 104026848 -13835779 - AluSg/x SINE Alu -3 307 89 372 109 0 47 chr9 104026848 104026904 -13835723 - AluJ/FLAM SINE Alu -247 55 1 1575 116 0 5 chr9 104028653 104028869 -13833758 - AluSq SINE Alu -14 299 85 192 308 33 33 chr9 104029998 104030089 -13832538 + MIR SINE MIR 58 148 -60 1100 266 78 30 chr9 104031478 104031951 -13830676 - MLT1D LTR MaLR -9 496 1 247 158 147 0 chr9 104034546 104034608 -13828019 - MIR SINE MIR -77 185 111 451 282 8 8 chr9 104036122 104036239 -13826388 + MIR SINE MIR 71 187 -75 279 0 0 0 chr9 104038111 104038142 -13824485 + (CA)n Simple_repeat Simple_repeat 2 32 0 495 215 32 76 chr9 104039343 104039501 -13823126 + MIR SINE MIR 55 205 -57 194 283 0 121 chr9 104040078 104040177 -13822450 - MER5A DNA MER1_type 0 189 103 244 218 157 33 chr9 104041409 104041508 -13821119 + MIR SINE MIR 38 147 -61 212 299 39 26 chr9 104044623 104044700 -13817927 - MIR SINE MIR -97 165 88 940 219 32 23 chr9 104044793 104045012 -13817615 - MER58A DNA MER1_type -3 221 1 216 303 101 82 chr9 104045305 104045513 -13817114 - L2 LINE L2 -29 3243 3032 203 308 200 31 chr9 104046988 104047183 -13815444 - MIR SINE MIR -6 256 29 672 301 36 5 chr9 104048318 104048537 -13814090 + MIR SINE MIR 34 259 -3 29 28 0 0 chr9 104049800 104049836 -13812791 + AT_rich Low_complexity Low_complexity 1 36 0 1447 114 78 19 chr9 104050182 104050453 -13812174 + L1MA8 LINE L1 5987 6273 -18 21 0 0 0 chr9 104050461 104050482 -13812145 + AT_rich Low_complexity Low_complexity 1 21 0 183 300 100 0 chr9 104050664 104050724 -13811903 + L2 LINE L2 3189 3254 -18 295 255 0 118 chr9 104051771 104051932 -13810695 - MIR SINE MIR -110 152 11 476 167 36 0 chr9 104053167 104053251 -13809376 + Tigger3(Golem) DNA MER2_type 1 87 -2942 1599 200 62 0 chr9 104053260 104053550 -13809077 + AluJb SINE Alu 1 308 -4 3829 151 55 44 chr9 104053575 104053740 -13808887 + Tigger3(Golem) DNA MER2_type 2242 2404 -624 1878 121 70 0 chr9 104053740 104054013 -13808614 + AluSx SINE Alu 1 292 -20 3829 151 55 44 chr9 104054013 104054624 -13808003 + Tigger3(Golem) DNA MER2_type 2404 3027 -1 355 355 20 35 chr9 104055240 104055440 -13807187 + MIR SINE MIR 56 252 -10 2973 174 56 68 chr9 104061262 104062024 -13800603 + L1MB7 LINE L1 5425 6177 -7 22 0 0 0 chr9 104062124 104062146 -13800481 + AT_rich Low_complexity Low_complexity 1 22 0 1297 251 3 0 chr9 104062164 104062459 -13800168 + AluJo SINE Alu 13 308 -4 1740 107 5 0 chr9 104062469 104062693 -13799934 + AluSx SINE Alu 1 225 -87 1901 129 20 20 chr9 104062778 104063073 -13799554 - AluJb SINE Alu -17 295 1 651 284 36 26 chr9 104064358 104064552 -13798075 + MIR SINE MIR 5 200 -62 343 326 21 57 chr9 104066922 104067115 -13795512 - L2 LINE L2 0 3272 3087 1594 174 0 4 chr9 104067921 104068179 -13794448 + AluJb SINE Alu 55 311 -1 21 36 0 0 chr9 104068215 104068243 -13794384 + AT_rich Low_complexity Low_complexity 1 28 0 508 165 259 51 chr9 104068247 104068405 -13794222 + L1ME2 LINE L1 5966 6156 -8 243 244 78 11 chr9 104068405 104068495 -13794132 - MER113 DNA MER1_type? -413 108 13 676 218 137 0 chr9 104068526 104068770 -13793857 - MER33 DNA MER1_type -45 318 1 810 146 8 0 chr9 104069587 104069710 -13792917 + AluJb SINE Alu 1 124 -188 682 115 0 0 chr9 104069710 104069797 -13792830 + AluSg/x SINE Alu 194 280 -30 2434 96 3 3 chr9 104069805 104070117 -13792510 - AluSx SINE Alu 0 312 1 2302 75 0 0 chr9 104074574 104074878 -13787749 + AluY SINE Alu 1 304 0 220 268 0 42 chr9 104076414 104076485 -13786142 + L2 LINE L2 2992 3059 -213 198 325 48 12 chr9 104076518 104076601 -13786026 + L2 LINE L2 3182 3267 -5 312 301 87 45 chr9 104077671 104078106 -13784521 + L1MC/D LINE L1 5346 5791 -588 402 252 61 37 chr9 104078794 104078954 -13783673 - MIR SINE MIR -63 145 3 341 326 43 28 chr9 104079693 104079834 -13782793 - MIR SINE MIR -102 160 18 223 298 106 0 chr9 104080117 104080221 -13782406 + MIR SINE MIR 142 256 -6 338 286 54 27 chr9 104081729 104081841 -13780786 - MIR SINE MIR -111 151 37 1416 183 20 42 chr9 104082812 104083118 -13779509 + AluJo SINE Alu 1 299 -13 21 0 0 0 chr9 104083122 104083143 -13779484 + AT_rich Low_complexity Low_complexity 1 21 0 192 313 146 0 chr9 104083322 104083418 -13779209 - MIR SINE MIR -62 146 37 389 254 141 14 chr9 104084707 104084849 -13777778 + MIR SINE MIR 37 196 -66 2076 90 10 27 chr9 104085495 104085795 -13776832 + AluSx SINE Alu 1 295 -17 493 274 106 16 chr9 104086388 104086586 -13776041 + MIR SINE MIR 37 251 -11 442 262 108 32 chr9 104087874 104088036 -13774591 + L1ME4a LINE L1 5442 5616 -525 327 264 117 61 chr9 104088176 104088373 -13774254 + LTR67 LTR ERVL 349 556 -1 232 191 45 82 chr9 104088723 104088833 -13773794 + L1ME4a LINE L1 5974 6079 -42 474 277 122 37 chr9 104088849 104089120 -13773507 + L2 LINE L2 3019 3312 -1 415 291 197 34 chr9 104089129 104089348 -13773279 + L2 LINE L2 3001 3262 -10 1998 126 0 0 chr9 104089348 104089642 -13772985 + AluSg SINE Alu 1 294 -16 415 291 197 34 chr9 104089642 104089656 -13772971 + L2 LINE L2 3262 3272 0 466 294 91 60 chr9 104090041 104090306 -13772321 + L1MC4 LINE L1 7755 8027 -15 1573 164 8 4 chr9 104090871 104091139 -13771488 + AluJb SINE Alu 20 288 -24 358 296 93 37 chr9 104091222 104091384 -13771243 - MIR SINE MIR -27 235 65 1599 182 10 10 chr9 104091496 104091798 -13770829 - AluJo SINE Alu -10 302 1 468 258 39 0 chr9 104091875 104092003 -13770624 - L1MD2 LINE L1 -6 6353 6221 1047 163 64 20 chr9 104092040 104092175 -13770452 - MER46A DNA MER2_type -2495 236 88 2082 123 0 16 chr9 104092175 104092491 -13770136 + AluSx SINE Alu 1 311 -1 1047 163 64 20 chr9 104092491 104092558 -13770069 - MER46A DNA MER2_type -2643 88 25 506 271 0 83 chr9 104092602 104092820 -13769807 + L2 LINE L2 3113 3312 -1 1946 126 0 14 chr9 104093302 104093595 -13769032 - AluJb SINE Alu -23 289 1 239 264 81 0 chr9 104093602 104093689 -13768938 - MIR SINE MIR -91 171 78 1805 143 20 3 chr9 104093830 104094130 -13768497 + AluJb SINE Alu 1 305 -7 841 116 0 14 chr9 104094489 104094627 -13768000 + AluSg/x SINE Alu 174 309 -1 211 307 11 11 chr9 104094983 104095071 -13767556 - MIR SINE MIR -78 130 43 580 273 95 9 chr9 104095242 104095473 -13767154 + L1ME4a LINE L1 5576 5826 -295 1251 161 6 128 chr9 104095474 104095810 -13766817 + AluJo SINE Alu 1 295 -17 351 279 131 64 chr9 104095831 104096114 -13766513 + L1ME4a LINE L1 5523 5824 -297 30 45 0 0 chr9 104096473 104096517 -13766110 + AT_rich Low_complexity Low_complexity 1 44 0 399 239 145 7 chr9 104096805 104096943 -13765684 + L1ME4a LINE L1 5964 6120 -1 2128 71 53 3 chr9 104097620 104097903 -13764724 - AluY SINE Alu -14 297 1 298 269 40 63 chr9 104098541 104098582 -13764045 - Charlie8 DNA MER1_type -169 172 132 2181 90 13 0 chr9 104098582 104098881 -13763746 - AluSx SINE Alu -9 303 1 298 269 40 63 chr9 104098881 104099014 -13763613 - Charlie8 DNA MER1_type -209 132 2 320 273 125 16 chr9 104099034 104099162 -13763465 - MIR SINE MIR -74 188 47 534 267 75 6 chr9 104099343 104099504 -13763123 + MIR SINE MIR 91 262 0 802 147 0 22 chr9 104100643 104100779 -13761848 + FLAM_C SINE Alu 1 133 0 190 280 186 0 chr9 104101811 104101929 -13760698 - MIR SINE MIR -89 173 34 198 103 0 0 chr9 104102221 104102250 -13760377 + (A)n Simple_repeat Simple_repeat 1 29 0 260 321 112 8 chr9 104103335 104103469 -13759158 + MIR SINE MIR 31 178 -84 3416 179 58 51 chr9 104103471 104103768 -13758859 + L1MB7 LINE L1 5367 5660 -524 2229 187 56 11 chr9 104103768 104104233 -13758394 + MER66B LTR ERV1 1 486 0 3416 179 58 51 chr9 104104233 104104247 -13758380 + L1MB7 LINE L1 5660 5672 -512 2189 86 0 3 chr9 104104247 104104539 -13758088 + AluY SINE Alu 1 291 -20 3416 179 58 51 chr9 104104539 104104998 -13757629 + L1MB7 LINE L1 5672 6149 -35 2130 114 0 0 chr9 104104998 104105325 -13757302 - AluSx SINE Alu 0 327 1 3416 179 58 51 chr9 104105325 104105354 -13757273 + L1MB7 LINE L1 6149 6176 -8 235 250 56 0 chr9 104105432 104105504 -13757123 - MIR SINE MIR -69 193 118 383 194 0 0 chr9 104105541 104105603 -13757024 - L2 LINE L2 0 3313 3252 214 226 16 65 chr9 104105617 104105679 -13756948 + L2 LINE L2 3251 3309 -4 2036 157 37 78 chr9 104105722 104105892 -13756735 + MLT1C LTR MaLR 28 203 -264 2085 124 0 0 chr9 104105892 104106190 -13756437 + AluSx SINE Alu 1 298 -14 2036 157 37 78 chr9 104106190 104106478 -13756149 + MLT1C LTR MaLR 203 467 0 2138 119 0 0 chr9 104106834 104107136 -13755491 + AluSx SINE Alu 1 302 -10 197 247 22 8 chr9 104107626 104107694 -13754933 + MIR SINE MIR 62 129 -79 220 275 29 0 chr9 104107799 104107868 -13754759 - L2 LINE L2 -50 3222 3152 393 236 67 0 chr9 104107888 104107977 -13754650 - MIR SINE MIR -117 145 51 407 232 0 0 chr9 104108125 104108207 -13754420 + MIR SINE MIR 61 142 -120 203 257 110 18 chr9 104108964 104109073 -13753554 + MER5A DNA MER1_type 8 126 -63 473 287 116 41 chr9 104109256 104109483 -13753144 - MIR SINE MIR -13 249 7 217 308 154 8 chr9 104109685 104109815 -13752812 - L2 LINE L2 -179 3093 2945 2066 113 7 10 chr9 104110016 104110317 -13752310 + AluSx SINE Alu 1 300 -12 2077 115 7 0 chr9 104110375 104110671 -13751956 - AluSx SINE Alu -14 298 1 195 100 0 0 chr9 104110919 104110949 -13751678 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 227 248 8 66 chr9 104111190 104111311 -13751316 - L2 LINE L2 -265 3007 2894 216 360 33 40 chr9 104111403 104111678 -13750949 - L2 LINE L2 -616 2698 2426 605 284 37 33 chr9 104112068 104112283 -13750344 + L1ME LINE L1 5479 5697 -424 1859 155 0 10 chr9 104112283 104112587 -13750040 + AluJb SINE Alu 1 301 -11 605 284 37 33 chr9 104112587 104112614 -13750013 + L1ME LINE L1 5697 5722 -399 2155 98 0 3 chr9 104113108 104113403 -13749224 + AluSq SINE Alu 1 294 -19 269 268 0 10 chr9 104113403 104113500 -13749127 + L1MC4 LINE L1 6608 6703 -1339 201 195 0 0 chr9 104113511 104113552 -13749075 + (TA)n Simple_repeat Simple_repeat 2 42 0 348 282 47 0 chr9 104113553 104113638 -13748989 + L1MC4 LINE L1 6615 6703 -1339 382 261 0 22 chr9 104113640 104113732 -13748895 + L1MC4 LINE L1 6614 6703 -1339 1729 250 107 14 chr9 104113774 104114393 -13748234 - L1MC4 LINE L1 -190 7852 7177 1357 213 10 10 chr9 104114454 104114755 -13747872 - AluJb SINE Alu -11 301 1 273 29 0 0 chr9 104115375 104115409 -13747218 + (TG)n Simple_repeat Simple_repeat 2 35 0 865 191 66 62 chr9 104115460 104115683 -13746944 - L1ME2 LINE L1 -2 6162 5936 1685 149 0 17 chr9 104115683 104115972 -13746655 + AluJb SINE Alu 18 301 -11 865 191 66 62 chr9 104115972 104116004 -13746623 - L1ME2 LINE L1 -228 5936 5906 247 294 206 16 chr9 104116908 104117092 -13745535 + MIR SINE MIR 35 253 -9 217 200 0 46 chr9 104117326 104117358 -13745269 + (TGAA)n Simple_repeat Simple_repeat 1 31 -31 1870 142 0 3 chr9 104117358 104117661 -13744966 + AluSx SINE Alu 3 304 0 217 200 0 46 chr9 104117661 104117692 -13744935 + (TGAA)n Simple_repeat Simple_repeat 31 62 0 1275 184 13 4 chr9 104117709 104117943 -13744684 + MLT1D LTR MaLR 1 236 -269 875 331 44 20 chr9 104117990 104118398 -13744229 - ERVL LTR ERVL -2211 3553 3136 827 156 0 0 chr9 104118436 104118558 -13744069 + FLAM_C SINE Alu 3 124 -19 2129 113 0 0 chr9 104118578 104118871 -13743756 + AluSx SINE Alu 1 293 -19 2079 123 0 3 chr9 104118886 104119187 -13743440 + AluSx SINE Alu 1 300 -12 847 298 93 44 chr9 104119200 104119457 -13743170 - ERVL LTR ERVL -2146 2850 2552 2283 89 0 3 chr9 104119457 104119759 -13742868 - AluSx SINE Alu -11 301 1 847 298 93 44 chr9 104119759 104119957 -13742670 - ERVL LTR ERVL -2444 2552 2365 615 360 25 11 chr9 104119967 104120328 -13742299 - ERVL LTR ERVL -3798 1198 833 1794 227 36 42 chr9 104120400 104120661 -13741966 + MLT1D LTR MaLR 1 259 -246 2198 100 0 0 chr9 104120661 104120962 -13741665 + AluSx SINE Alu 1 301 -11 1794 227 36 42 chr9 104120962 104121202 -13741425 + MLT1D LTR MaLR 259 499 -6 2007 106 0 3 chr9 104121565 104121950 -13740677 + AluSg SINE Alu 1 384 0 305 347 77 42 chr9 104122011 104122322 -13740305 - ERVL LTR ERVL -4674 322 1 204 40 0 0 chr9 104122577 104122602 -13740025 + (TA)n Simple_repeat Simple_repeat 2 26 0 1928 130 10 0 chr9 104122602 104122895 -13739732 - AluJb SINE Alu -16 296 1 759 260 65 82 chr9 104122916 104123025 -13739602 + MLT1I LTR MaLR 5 114 -295 1473 142 0 116 chr9 104123025 104123180 -13739447 + AluJo SINE Alu 1 172 -140 2508 50 0 0 chr9 104123180 104123477 -13739150 + AluY SINE Alu 1 297 -14 1473 142 0 116 chr9 104123477 104123488 -13739139 + AluJo SINE Alu 172 183 -129 2151 103 3 0 chr9 104123488 104123780 -13738847 + AluSx SINE Alu 1 293 -19 1473 142 0 116 chr9 104123780 104123914 -13738713 + AluJo SINE Alu 183 267 -45 759 260 65 82 chr9 104123914 104124216 -13738411 + MLT1I LTR MaLR 114 409 0 1527 134 58 15 chr9 104124406 104124667 -13737960 - AluJb SINE Alu -4 308 37 319 168 147 32 chr9 104124735 104124830 -13737797 + MLT1J LTR MaLR 1 106 -518 974 149 135 97 chr9 104124942 104125124 -13737503 + AluJo SINE Alu 1 199 -103 2134 98 3 0 chr9 104125124 104125420 -13737207 + AluSg SINE Alu 1 297 -13 974 149 135 97 chr9 104125420 104125526 -13737101 + AluJo SINE Alu 199 300 -2 186 43 0 0 chr9 104125530 104125553 -13737074 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 184 200 31 46 chr9 104126030 104126095 -13736532 - MIR SINE MIR -117 145 82 225 170 21 0 chr9 104126108 104126155 -13736472 - MLT1K LTR MaLR -23 565 518 2027 110 0 10 chr9 104126155 104126454 -13736173 + AluSq SINE Alu 1 296 -17 251 300 0 0 chr9 104126558 104126628 -13735999 + CT-rich Low_complexity Low_complexity 3 72 0 392 271 5 28 chr9 104126857 104127075 -13735552 + MLT1J LTR MaLR 237 502 -9 402 200 19 67 chr9 104127629 104127734 -13734893 + MIR SINE MIR 35 134 -128 2158 121 3 0 chr9 104127969 104128274 -13734353 + AluSx SINE Alu 1 306 -6 201 225 0 0 chr9 104128702 104128742 -13733885 + L2 LINE L2 3272 3311 -2 189 107 0 0 chr9 104129317 104129345 -13733282 + (A)n Simple_repeat Simple_repeat 1 28 0 356 295 27 77 chr9 104129477 104129535 -13733092 - MIR SINE MIR -81 181 122 1757 143 0 4 chr9 104129535 104129800 -13732827 + AluSx SINE Alu 40 303 -9 356 295 27 77 chr9 104129800 104129924 -13732703 - MIR SINE MIR -140 122 8 588 277 74 79 chr9 104129940 104130231 -13732396 - MLT1J LTR MaLR 0 511 221 1851 168 0 31 chr9 104130231 104130553 -13732074 - AluJo SINE Alu 0 312 1 588 277 74 79 chr9 104130553 104130665 -13731962 - MLT1J LTR MaLR -290 221 110 234 310 113 5 chr9 104130755 104130968 -13731659 - L1ME LINE L1 -199 5922 5687 2170 100 0 35 chr9 104131009 104131320 -13731307 - AluSp SINE Alu -13 300 1 287 169 48 12 chr9 104131531 104131614 -13731013 + L1MC4 LINE L1 7957 8042 0 213 62 62 0 chr9 104131950 104131998 -13730629 + (TA)n Simple_repeat Simple_repeat 2 52 0 854 253 0 0 chr9 104132000 104132174 -13730453 + AluJb SINE Alu 133 306 -6 1581 182 43 38 chr9 104132174 104132340 -13730287 - MSTA LTR MaLR -66 362 198 2152 105 37 0 chr9 104132340 104132636 -13729991 - AluSq SINE Alu -6 307 1 1581 182 43 38 chr9 104132636 104132815 -13729812 - MSTA LTR MaLR -230 198 15 564 168 77 32 chr9 104132815 104132970 -13729657 - L1MB8 LINE L1 -10 6168 6007 734 217 72 18 chr9 104133009 104133175 -13729452 - AluJo SINE Alu -31 281 107 183 80 0 0 chr9 104133257 104133282 -13729345 + (TTCTC)n Simple_repeat Simple_repeat 5 29 0 259 238 0 48 chr9 104133320 104133333 -13729294 - L2 LINE L2 0 3272 3260 1934 119 32 0 chr9 104133333 104133610 -13729017 - AluSx SINE Alu -26 286 1 259 238 0 48 chr9 104133610 104133659 -13728968 - L2 LINE L2 -12 3260 3213 228 306 59 0 chr9 104133658 104133743 -13728884 - MIR SINE MIR -65 143 54 * 402 21 0 0 chr9 104134476 104134523 -13728104 + (TTA)n Simple_repeat Simple_repeat 2 48 0 307 290 19 14 chr9 104135473 104135623 -13727004 + MIR SINE MIR 18 164 -63 309 264 14 0 chr9 104135851 104135923 -13726704 - L1MC4 LINE L1 0 8042 7970 25 31 0 0 chr9 104135990 104136022 -13726605 + AT_rich Low_complexity Low_complexity 1 32 0 1602 180 3 18 chr9 104136051 104136335 -13726292 - AluJb SINE Alu -32 280 1 578 236 41 68 chr9 104136380 104136600 -13726027 - MIR SINE MIR -28 234 21 197 239 22 0 chr9 104136600 104136646 -13725981 - L3 LINE CR1 -38 1539 1493 193 275 198 0 chr9 104136828 104136919 -13725708 + MIR SINE MIR 36 144 -118 216 308 142 17 chr9 104138787 104138907 -13723720 - MIR SINE MIR -56 152 18 22 56 0 0 chr9 104140296 104140332 -13722295 + GC_rich Low_complexity Low_complexity 1 36 0 326 200 0 0 chr9 104141191 104141251 -13721376 + MIR SINE MIR 79 138 -124 204 175 50 0 chr9 104141529 104141569 -13721058 + MIR SINE MIR 107 148 -114 249 287 37 37 chr9 104142053 104142161 -13720466 + MIR SINE MIR 30 137 -71 2239 105 3 0 chr9 104142222 104142518 -13720109 + AluSx SINE Alu 1 297 -15 358 316 183 23 chr9 104142669 104142970 -13719657 + L3 LINE CR1 1113 1461 -116 210 336 139 8 chr9 104143027 104143149 -13719478 + MIR SINE MIR 119 256 -6 390 303 112 67 chr9 104143725 104144082 -13718545 + L2 LINE L2 2897 3269 -3 200 100 0 0 chr9 104144236 104144266 -13718361 + MIR SINE MIR 89 118 -144 283 236 159 64 chr9 104144536 104144677 -13717950 + MIR SINE MIR 35 188 -63 521 202 101 0 chr9 104144829 104144948 -13717679 + MIR SINE MIR 16 146 -116 203 246 130 14 chr9 104145886 104145955 -13716672 - MIR SINE MIR -94 114 38 2238 98 0 7 chr9 104146125 104146421 -13716206 + AluSx SINE Alu 3 296 -16 591 199 112 0 chr9 104146439 104146600 -13716027 - MER2 DNA MER2_type -2 343 165 * 1185 156 9 0 chr9 104146595 104146807 -13715820 - MER2 DNA MER2_type -126 219 6 300 226 36 71 chr9 104146813 104146897 -13715730 + L1MC4a LINE L1 5788 5868 -1940 234 0 0 0 chr9 104146999 104147025 -13715602 + (CA)n Simple_repeat Simple_repeat 2 27 0 2103 98 0 50 chr9 104147114 104147431 -13715196 - AluSx SINE Alu -11 301 1 6061 221 56 48 chr9 104147436 104148643 -13713984 - L1ME1 LINE L1 -223 5943 4748 2104 120 6 22 chr9 104148643 104148960 -13713667 - AluSx SINE Alu 0 312 1 1856 145 6 41 chr9 104148964 104149282 -13713345 - AluJb SINE Alu -5 307 1 6061 221 56 48 chr9 104149282 104150706 -13711921 - L1ME1 LINE L1 -1420 4746 3288 1611 156 64 14 chr9 104150741 104151036 -13711591 - AluJb SINE Alu -2 310 1 33 43 0 0 chr9 104151068 104151115 -13711512 + AT_rich Low_complexity Low_complexity 1 47 0 282 264 142 34 chr9 104151115 104151263 -13711364 - L1ME4a LINE L1 -14 6107 5944 385 282 46 15 chr9 104151321 104151452 -13711175 + MIR SINE MIR 80 214 -48 180 111 0 0 chr9 104151714 104151741 -13710886 + (TG)n Simple_repeat Simple_repeat 2 28 0 258 370 45 0 chr9 104151764 104151988 -13710639 - L1MC4a LINE L1 -1878 5930 5697 2207 120 0 0 chr9 104152266 104152565 -13710062 - AluSx SINE Alu -13 299 1 215 308 68 41 chr9 104152705 104152851 -13709776 + L3 LINE CR1 1409 1558 -19 407 204 32 0 chr9 104153013 104153106 -13709521 - MIR SINE MIR -65 143 48 1867 147 33 13 chr9 104153451 104153757 -13708870 + AluJb SINE Alu 1 312 0 2019 102 25 32 chr9 104153964 104154278 -13708349 + AluSx SINE Alu 1 312 0 214 298 183 0 chr9 104157605 104157709 -13704918 + L3 LINE CR1 1420 1542 -35 256 240 192 56 chr9 104158440 104158565 -13704062 - MIR SINE MIR -107 155 14 392 341 6 24 chr9 104158630 104158797 -13703830 - L2 LINE L2 0 3313 3150 243 234 13 26 chr9 104159148 104159225 -13703402 + (TCTCTG)n Simple_repeat Simple_repeat 3 78 0 337 20 40 0 chr9 104159341 104159391 -13703236 + (TTTG)n Simple_repeat Simple_repeat 2 53 0 2247 105 0 3 chr9 104159408 104159721 -13702906 - AluSx SINE Alu 0 312 1 235 325 0 18 chr9 104159961 104160075 -13702552 + CT-rich Low_complexity Low_complexity 5 116 0 331 381 7 0 chr9 104160322 104160461 -13702166 + MIR SINE MIR 117 256 -6 2277 101 3 3 chr9 104160907 104161214 -13701413 + AluSq SINE Alu 1 307 -6 207 375 11 0 chr9 104161666 104161754 -13700873 + MIR SINE MIR 117 205 -57 206 334 47 33 chr9 104161819 104161950 -13700677 - MIR3 SINE MIR -36 226 84 357 261 57 0 chr9 104163047 104163170 -13699457 + MIR3 SINE MIR 29 160 -48 220 309 93 0 chr9 104164397 104164494 -13698133 - MIR SINE MIR -97 165 60 31 82 0 0 chr9 104164677 104164750 -13697877 + GC_rich Low_complexity Low_complexity 1 73 0 288 287 116 8 chr9 104165632 104165761 -13696866 - MIR SINE MIR -6 256 114 381 316 68 13 chr9 104166878 104167112 -13695515 + L2 LINE L2 2818 3064 -208 273 287 128 0 chr9 104167301 104167395 -13695232 + MER91A DNA MER1_type 91 196 0 428 183 15 5 chr9 104167423 104167526 -13695101 + MIR SINE MIR 37 139 -69 189 178 0 0 chr9 104169622 104169667 -13692960 + C-rich Low_complexity Low_complexity 3 47 0 266 303 40 13 chr9 104170082 104170234 -13692393 + (CACCAT)n Simple_repeat Simple_repeat 6 161 0 509 273 70 21 chr9 104170292 104170435 -13692192 + MIR SINE MIR 89 238 -24 223 276 30 37 chr9 104170518 104170652 -13691975 + (CACCAT)n Simple_repeat Simple_repeat 3 135 0 1470 207 39 15 chr9 104170844 104171182 -13691445 - MER47A DNA MER2_type -19 347 2 1953 126 0 11 chr9 104171382 104171699 -13690928 + AluSx SINE Alu 1 314 0 304 279 148 0 chr9 104172510 104172661 -13689966 - MER91A DNA MER1_type 0 190 2 182 210 113 16 chr9 104173312 104173374 -13689253 - MIR SINE MIR -167 95 28 511 192 50 25 chr9 104173765 104173885 -13688742 + MIR SINE MIR 50 172 -90 191 398 12 0 chr9 104174796 104174879 -13687748 + L2 LINE L2 2654 2737 -577 280 318 110 45 chr9 104174925 104175189 -13687438 + L2 LINE L2 2837 3117 -155 203 156 0 0 chr9 104176748 104176780 -13685847 + (GCCTG)n Simple_repeat Simple_repeat 5 36 0 372 333 26 8 chr9 104177265 104177382 -13685245 - L2 LINE L2 -1 3312 3194 1959 120 0 7 chr9 104177637 104177921 -13684706 + AluSx SINE Alu 1 282 -30 1391 126 0 5 chr9 104177714 104177921 -13684706 + AluSg/x SINE Alu 75 328 0 433 0 0 0 chr9 104177921 104177969 -13684658 + (TAAAA)n Simple_repeat Simple_repeat 3 110 0 793 109 9 0 chr9 104178038 104178148 -13684479 + FRAM SINE Alu 22 132 -44 40 37 0 0 chr9 104178148 104178202 -13684425 + AT_rich Low_complexity Low_complexity 1 54 0 2000 136 3 10 chr9 104178392 104178694 -13683933 - AluJo SINE Alu -12 300 1 2299 95 3 0 chr9 104178706 104179012 -13683615 - AluSq SINE Alu -6 307 1 301 318 18 76 chr9 104181403 104181626 -13681001 - MIR SINE MIR -29 233 24 351 299 6 18 chr9 104181989 104182211 -13680416 + GA-rich Low_complexity Low_complexity 1 219 0 494 288 0 15 chr9 104183979 104184111 -13678516 + MIR SINE MIR 17 146 -62 292 273 22 27 chr9 104184615 104184742 -13677885 - MIR SINE MIR -55 153 43 198 260 0 0 chr9 104184976 104185026 -13677601 + MIR SINE MIR 213 262 0 * 585 270 13 29 chr9 104185014 104185195 -13677432 + MIR SINE MIR 49 227 -35 328 276 70 13 chr9 104185356 104185512 -13677115 + MER103 DNA DNA 2 166 0 572 287 20 43 chr9 104185797 104186016 -13676611 + MIR SINE MIR 11 226 -36 284 305 65 10 chr9 104186371 104186492 -13676135 + MIR SINE MIR 38 164 -67 215 352 82 27 chr9 104186636 104186892 -13675735 + L2 LINE L2 2815 3084 -229 233 269 2 59 chr9 104186978 104187062 -13675565 + MIR SINE MIR 71 141 -67 388 254 68 25 chr9 104189216 104189334 -13673293 - MIR SINE MIR -43 219 97 391 260 10 0 chr9 104189464 104189568 -13673059 + MER103 DNA DNA 12 116 -50 511 253 12 68 chr9 104189590 104189752 -13672875 + MER5B DNA MER1_type 22 174 -4 798 149 8 22 chr9 104190297 104190431 -13672196 - FLAM_A SINE Alu -1 132 1 352 111 0 0 chr9 104190504 104190558 -13672069 - L1MB7 LINE L1 -19 6165 6112 330 284 99 14 chr9 104190565 104190706 -13671921 + MIR SINE MIR 97 249 -13 351 0 0 0 chr9 104191460 104191499 -13671128 + (CA)n Simple_repeat Simple_repeat 2 40 0 1508 174 39 11 chr9 104191551 104191832 -13670795 - AluJb SINE Alu -23 289 1 207 0 0 0 chr9 104191853 104191876 -13670751 + (TC)n Simple_repeat Simple_repeat 2 24 0 227 338 0 0 chr9 104191941 104192009 -13670618 + L2 LINE L2 2992 3059 -213 261 331 66 25 chr9 104192040 104192161 -13670466 + L2 LINE L2 3188 3313 0 375 60 0 0 chr9 104192448 104192498 -13670129 + (TG)n Simple_repeat Simple_repeat 1 50 0 357 291 48 0 chr9 104193279 104193382 -13669245 + MIR SINE MIR 37 144 -64 465 306 51 20 chr9 104193648 104193844 -13668783 - MIR SINE MIR -10 252 51 1828 164 6 10 chr9 104194400 104194712 -13667915 + AluJb SINE Alu 1 311 -1 198 0 0 0 chr9 104194715 104194737 -13667890 + (CCAA)n Simple_repeat Simple_repeat 2 23 0 1190 156 9 53 chr9 104194764 104194989 -13667638 - MER2 DNA MER2_type -130 215 1 320 333 50 14 chr9 104195204 104195345 -13667282 - MIR SINE MIR -8 254 109 360 304 112 60 chr9 104195347 104195585 -13667042 - MIR SINE MIR -13 249 3 477 319 74 19 chr9 104196817 104197033 -13665594 + MIR SINE MIR 3 230 -32 312 349 113 34 chr9 104197579 104198163 -13664464 + L2 LINE L2 2265 2894 -420 215 245 151 50 chr9 104198206 104198345 -13664282 + L2 LINE L2 2902 3054 -218 868 163 136 0 chr9 104198706 104198890 -13663737 + MER3 DNA MER1_type 1 209 0 2300 65 3 3 chr9 104199637 104199930 -13662697 - AluY SINE Alu -18 293 1 261 73 0 0 chr9 104200055 104200096 -13662531 - AluSp/q SINE Alu -4 299 259 535 73 0 12 chr9 104200211 104200293 -13662334 + Alu SINE Alu 228 308 -1 678 188 0 15 chr9 104200638 104200771 -13661856 + FLAM_C SINE Alu 1 131 -2 207 0 0 0 chr9 104200988 104201011 -13661616 + (T)n Simple_repeat Simple_repeat 1 23 0 2277 95 10 0 chr9 104201050 104201356 -13661271 + AluSc SINE Alu 1 309 0 2180 87 13 3 chr9 104201360 104201660 -13660967 + AluSx SINE Alu 1 303 -9 22 35 0 0 chr9 104201777 104201806 -13660821 + AT_rich Low_complexity Low_complexity 1 29 0 233 306 36 0 chr9 104201817 104201884 -13660743 - MIR SINE MIR -87 121 51 2371 55 0 0 chr9 104201988 104202278 -13660349 + AluY SINE Alu 1 290 -21 279 264 83 76 chr9 104203591 104203696 -13658931 + MIR SINE MIR 106 214 -48 2112 84 21 0 chr9 104203696 104203982 -13658645 + AluY SINE Alu 1 292 -19 279 264 83 76 chr9 104203982 104204020 -13658607 + MIR SINE MIR 214 250 -12 2085 127 0 10 chr9 104204143 104204450 -13658177 + AluSx SINE Alu 1 304 -8 532 256 106 0 chr9 104204460 104204620 -13658007 - MIR SINE MIR -40 222 46 1961 96 55 21 chr9 104205240 104205531 -13657096 + AluSx SINE Alu 1 301 -11 919 70 0 109 chr9 104205918 104206074 -13656553 - AluSg/x SINE Alu -10 300 162 276 244 113 35 chr9 104207105 104207220 -13655407 + L2 LINE L2 2912 3035 -237 1491 159 83 14 chr9 104207220 104207510 -13655117 + AluJb SINE Alu 2 311 -1 2793 157 41 61 chr9 104207555 104208167 -13654460 + L1MB1 LINE L1 4893 5480 -688 207 0 0 0 chr9 104208167 104208190 -13654437 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2793 157 41 61 chr9 104208190 104208536 -13654091 + L1MB1 LINE L1 5480 5832 -336 1094 191 8 29 chr9 104208738 104208979 -13653648 + L1MB1 LINE L1 5933 6168 0 342 289 44 84 chr9 104209186 104209435 -13653192 + L2 LINE L2 2475 2713 -601 824 104 8 37 chr9 104209503 104209637 -13652990 - FLAM_C SINE Alu -12 131 2 244 280 56 56 chr9 104210006 104210131 -13652496 + L2 LINE L2 3057 3181 -91 404 323 41 90 chr9 104211258 104211709 -13650918 - L2 LINE L2 -180 3092 2653 360 335 104 16 chr9 104211917 104212099 -13650528 + MIR SINE MIR 50 247 -15 2172 97 3 0 chr9 104212614 104212903 -13649724 + AluSp SINE Alu 1 290 -23 318 324 53 35 chr9 104212993 104213163 -13649464 - MIR SINE MIR -86 176 4 21 57 0 0 chr9 104213223 104213258 -13649369 + AT_rich Low_complexity Low_complexity 1 35 0 593 139 30 0 chr9 104213275 104213376 -13649251 + L1MC4 LINE L1 7938 8041 -1 553 266 101 21 chr9 104213605 104213793 -13648834 - MIR SINE MIR -58 204 2 276 314 26 46 chr9 104214042 104214195 -13648432 + L2 LINE L2 2702 2851 -463 2242 180 49 99 chr9 104214341 104215070 -13647557 + L1MC4 LINE L1 7349 8041 -1 579 106 0 182 chr9 104215126 104215258 -13647369 + AluJb SINE Alu 15 122 -190 212 167 0 0 chr9 104215496 104215532 -13647095 + L2 LINE L2 3021 3056 -216 331 258 72 121 chr9 104215797 104216223 -13646404 - L2 LINE L2 -99 3173 2754 4759 179 63 134 chr9 104216469 104217152 -13645475 - L1MC4a LINE L1 0 7808 7078 1419 160 99 14 chr9 104217152 104217434 -13645193 - AluSq SINE Alu -7 306 1 4759 179 63 134 chr9 104217434 104217490 -13645137 - L1MC4a LINE L1 -730 7078 7020 874 123 0 0 chr9 104217490 104217612 -13645015 - FLAM_C SINE Alu -21 122 1 4759 179 63 134 chr9 104217612 104218478 -13644149 - L1MC4a LINE L1 -788 7020 6204 437 241 35 9 chr9 104218528 104218644 -13643983 - L1ME1 LINE L1 -20 6146 6028 248 233 267 17 chr9 104219448 104219568 -13643059 + MIR SINE MIR 97 246 -16 258 342 62 31 chr9 104219778 104219939 -13642688 - MIR SINE MIR -19 243 78 405 367 42 24 chr9 104220002 104220291 -13642336 + L2 LINE L2 2101 2394 -920 252 59 0 0 chr9 104220328 104220362 -13642265 + (T)n Simple_repeat Simple_repeat 1 34 0 356 264 146 9 chr9 104221786 104221896 -13640731 - L2 LINE L2 -3 3310 3186 996 164 12 0 chr9 104222247 104222418 -13640209 + FRAM SINE Alu 1 172 -4 356 279 203 24 chr9 104222454 104222647 -13639980 + MIR SINE MIR 38 262 0 1789 217 40 42 chr9 104222839 104223239 -13639388 + MLT1D LTR MaLR 1 401 -104 2050 124 3 0 chr9 104223239 104223538 -13639089 - AluSx SINE Alu -12 300 1 1789 217 40 42 chr9 104223538 104223643 -13638984 + MLT1D LTR MaLR 401 505 0 2092 94 3 20 chr9 104223911 104224210 -13638417 - AluSg SINE Alu -16 294 1 387 264 100 29 chr9 104224735 104224875 -13637752 - MIR SINE MIR -54 208 59 417 293 166 10 chr9 104225325 104225530 -13637097 - MIR SINE MIR -14 248 12 273 29 0 0 chr9 104225600 104225634 -13636993 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 186 289 0 0 chr9 104225833 104225885 -13636742 - L2 LINE L2 -11 3261 3210 612 334 73 41 chr9 104225939 104226256 -13636371 - L3 LINE CR1 -4 1573 1247 2083 103 7 3 chr9 104226271 104226563 -13636064 + AluSx SINE Alu 1 293 -19 188 268 0 0 chr9 104226637 104226678 -13635949 - L3 LINE CR1 -461 1116 1076 236 338 90 23 chr9 104226791 104226924 -13635703 - MIR3 SINE MIR -65 143 2 558 364 91 18 chr9 104226933 104227331 -13635296 - L3 LINE CR1 -614 963 537 2585 23 0 0 chr9 104227335 104227636 -13634991 - AluYa5 SINE Alu -10 301 1 201 239 0 0 chr9 104227749 104227795 -13634832 + CT-rich Low_complexity Low_complexity 3 48 0 258 237 156 30 chr9 104228051 104228186 -13634441 - L1ME3A LINE L1 0 6170 6019 1757 260 112 33 chr9 104228227 104228996 -13633631 - L1ME3A LINE L1 -224 5946 5239 2096 117 0 3 chr9 104228996 104229012 -13633615 - AluSc SINE Alu -11 298 283 208 0 0 0 chr9 104229012 104229035 -13633592 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2096 117 0 3 chr9 104229035 104229317 -13633310 - AluSc SINE Alu -26 283 1 1757 260 112 33 chr9 104229317 104229753 -13632874 - L1ME3A LINE L1 -931 5239 4839 261 0 0 0 chr9 104229753 104229782 -13632845 + (CA)n Simple_repeat Simple_repeat 2 30 0 1757 260 112 33 chr9 104229782 104230315 -13632312 - L1ME3A LINE L1 -1331 4839 3914 1472 191 0 15 chr9 104230354 104230627 -13632000 - AluJo SINE Alu 0 312 44 943 168 22 11 chr9 104230627 104230812 -13631815 - Tigger5 DNA MER2_type -2136 187 1 253 316 0 0 chr9 104230818 104230897 -13631730 + MIR SINE MIR 174 252 -10 * 402 322 51 11 chr9 104230870 104231047 -13631580 - MIR SINE MIR -22 240 57 252 218 50 50 chr9 104231150 104231251 -13631376 + MER112 DNA MER1_type 67 167 -93 1007 185 12 0 chr9 104231870 104232043 -13630584 + FAM SINE Alu 1 175 0 2186 127 0 0 chr9 104232522 104232830 -13629797 - AluSx SINE Alu 0 312 5 1853 151 6 22 chr9 104232999 104233310 -13629317 - AluJb SINE Alu -6 306 1 201 39 0 0 chr9 104233336 104233362 -13629265 + (TATAA)n Simple_repeat Simple_repeat 3 28 0 284 183 0 28 chr9 104233604 104233675 -13628952 + AluS SINE Alu 1 69 -239 281 158 18 0 chr9 104234572 104234629 -13627998 + L2 LINE L2 2992 3049 -223 280 325 106 0 chr9 104235024 104235147 -13627480 + L2 LINE L2 3137 3272 0 183 42 0 0 chr9 104236310 104236334 -13626293 + (CA)n Simple_repeat Simple_repeat 1 24 0 225 0 0 0 chr9 104236923 104236948 -13625679 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 368 232 79 21 chr9 104237759 104237873 -13624754 + MIR SINE MIR 34 151 -63 292 299 104 15 chr9 104238320 104238454 -13624173 - MIR3 SINE MIR -41 167 22 184 333 49 12 chr9 104238663 104238744 -13623883 - MIR SINE MIR -87 175 92 216 0 0 0 chr9 104240605 104240629 -13621998 + (CA)n Simple_repeat Simple_repeat 1 24 0 705 295 9 19 chr9 104241595 104241805 -13620822 - MIR SINE MIR -48 214 7 212 346 30 0 chr9 104242167 104242268 -13620359 + L2 LINE L2 2868 2971 -343 1904 143 13 19 chr9 104246736 104247050 -13615577 - AluJb SINE Alu 0 312 1 332 290 19 9 chr9 104247053 104247160 -13615467 - MIR SINE MIR -118 144 37 202 111 0 28 chr9 104247421 104247457 -13615170 + (CCCCCA)n Simple_repeat Simple_repeat 2 36 0 204 163 0 0 chr9 104248419 104248462 -13614165 + GA-rich Low_complexity Low_complexity 2 44 0 793 285 45 16 chr9 104298465 104298914 -13563713 + L1MEc LINE L1 1038 1499 -4897 431 244 16 0 chr9 104298904 104299031 -13563596 + L1MEc LINE L1 2279 2407 -3808 * 2228 93 13 3 chr9 104299060 104299360 -13563267 + AluSx SINE Alu 1 303 -9 22 35 0 0 chr9 104299477 104299506 -13563121 + AT_rich Low_complexity Low_complexity 1 29 0 232 306 36 0 chr9 104299517 104299584 -13563043 - MIR SINE MIR -87 121 51 2472 28 18 3 chr9 104299688 104299974 -13562653 + AluY SINE Alu 1 290 -21 2750 88 99 7 chr9 104300819 104301241 -13561386 + MER4C LTR ERV1 1 461 -4 206 284 202 28 chr9 104301963 104302072 -13560555 - L2 LINE L2 -212 3060 2933 523 174 137 32 chr9 104302991 104303210 -13559417 + MER96B DNA MER1_type? 8 249 -168 284 220 102 0 chr9 104303328 104303387 -13559240 - MIR SINE MIR -115 147 83 369 327 98 7 chr9 104303656 104303809 -13558818 - MIR SINE MIR -5 257 91 2252 128 0 3 chr9 104303861 104304173 -13558454 + AluSx SINE Alu 1 311 -1 1741 146 9 70 chr9 104304215 104304531 -13558096 + AluJo SINE Alu 1 297 -15 357 324 44 16 chr9 104304840 104305022 -13557605 + MIR SINE MIR 58 244 -18 281 203 0 63 chr9 104305038 104305117 -13557510 + MIR SINE MIR 140 213 -49 701 268 68 30 chr9 104305280 104305515 -13557112 - MIR SINE MIR -1 261 18 606 289 51 47 chr9 104305573 104305826 -13556801 - MIR SINE MIR -7 255 2 1008 240 41 31 chr9 104305838 104306155 -13556472 - L2 LINE L2 -1207 2107 1788 1504 199 22 4 chr9 104306662 104306938 -13555689 - AluJo SINE Alu -19 293 13 374 96 96 14 chr9 104306987 104307060 -13555567 - AluJb SINE Alu -136 166 116 216 309 134 0 chr9 104307224 104307321 -13555306 - MIR SINE MIR -42 220 111 2247 113 0 22 chr9 104307323 104307641 -13554986 + AluSq SINE Alu 2 312 -1 1724 143 59 0 chr9 104307673 104307946 -13554681 + AluJo SINE Alu 1 289 -23 290 263 150 44 chr9 104308232 104308298 -13554329 + MIR SINE MIR 37 95 -167 2313 86 0 13 chr9 104308298 104308600 -13554027 - AluSx SINE Alu -12 300 3 290 263 150 44 chr9 104308600 104308693 -13553934 + MIR SINE MIR 95 213 -49 689 233 11 28 chr9 104308699 104308875 -13553752 - MER20 DNA MER1_type -5 214 42 1416 177 53 33 chr9 104309432 104309571 -13553056 + AluJo SINE Alu 1 136 -176 1914 141 7 7 chr9 104309571 104309869 -13552758 + AluJb SINE Alu 1 298 -14 1416 177 53 33 chr9 104309869 104310028 -13552599 + AluJo SINE Alu 136 305 -7 27 49 0 0 chr9 104310057 104310098 -13552529 + AT_rich Low_complexity Low_complexity 1 41 0 2318 93 0 10 chr9 104310152 104310454 -13552173 - AluSc SINE Alu -10 299 1 2059 88 78 3 chr9 104310521 104310804 -13551823 - AluSx SINE Alu -8 304 1 305 197 0 0 chr9 104311231 104311297 -13551330 + L1MC1 LINE L1 6072 6137 -196 3852 209 47 51 chr9 104311312 104312811 -13549816 + L1MCa LINE L1 2172 3663 -2763 1155 86 153 53 chr9 104312811 104313020 -13549607 + MER30 DNA MER1_type 1 230 0 3852 209 47 51 chr9 104313020 104313126 -13549501 + L1MCa LINE L1 3663 3768 -2658 1782 171 3 17 chr9 104313177 104313469 -13549158 - AluJo SINE Alu -24 288 1 8214 139 43 74 chr9 104313469 104313698 -13548929 + L1MA4 LINE L1 3201 3436 -2864 2270 107 10 0 chr9 104313698 104314006 -13548621 + AluSx SINE Alu 1 311 -1 8214 139 43 74 chr9 104314006 104314486 -13548141 + L1MA4 LINE L1 3436 3929 -2371 758 130 8 0 chr9 104314486 104314609 -13548018 + FLAM_C SINE Alu 18 141 -2 8214 139 43 74 chr9 104314609 104316979 -13545648 + L1MA4 LINE L1 3929 6289 -11 339 265 0 10 chr9 104316997 104317099 -13545528 + L1MCa LINE L1 3776 3876 -2550 1960 149 0 10 chr9 104317309 104317611 -13545016 - AluJb SINE Alu -13 299 1 294 371 84 11 chr9 104317641 104317819 -13544808 + MIR SINE MIR 37 227 -35 475 227 47 43 chr9 104318613 104318792 -13543835 + MIR SINE MIR 60 238 -24 528 221 66 0 chr9 104319335 104319457 -13543170 + MIR SINE MIR 5 134 -128 1471 195 30 10 chr9 104319663 104319960 -13542667 - AluJo SINE Alu -9 303 1 522 308 66 81 chr9 104320537 104321082 -13541545 + L2 LINE L2 2713 3240 -73 342 0 0 0 chr9 104321128 104321166 -13541461 + (CA)n Simple_repeat Simple_repeat 2 39 0 365 219 144 41 chr9 104321575 104321721 -13540906 + MIR SINE MIR 102 262 0 218 324 36 72 chr9 104321731 104321870 -13540757 - L2 LINE L2 -3 3269 3136 2380 138 8 40 chr9 104322116 104322180 -13540447 + L1MB3 LINE L1 5719 5783 -400 2380 144 23 36 chr9 104322180 104322618 -13540009 + MSTB1 LTR MaLR 1 432 0 2380 138 8 40 chr9 104322618 104322801 -13539826 + L1MB3 LINE L1 5783 5970 -213 2171 130 0 9 chr9 104322801 104323116 -13539511 + AluSq SINE Alu 1 312 -1 2380 138 8 40 chr9 104323116 104323347 -13539280 + L1MB3 LINE L1 5970 6183 0 180 0 0 0 chr9 104326901 104326921 -13535706 + (A)n Simple_repeat Simple_repeat 1 20 0 1087 184 35 0 chr9 104327987 104328188 -13534439 - MER3 DNA MER1_type -1 208 1 450 308 50 11 chr9 104328621 104328803 -13533824 + MIR SINE MIR 74 262 0 503 301 64 10 chr9 104329648 104329857 -13532770 + MIR SINE MIR 33 250 -12 235 313 45 0 chr9 104330617 104330684 -13531943 + MIR SINE MIR 60 129 -79 206 128 26 0 chr9 104330847 104330886 -13531741 + (TGAA)n Simple_repeat Simple_repeat 4 43 0 252 260 198 0 chr9 104330991 104331087 -13531540 - L2 LINE L2 -2 3311 3197 1506 164 31 65 chr9 104331143 104331466 -13531161 + AluJb SINE Alu 1 312 0 2146 147 0 0 chr9 104332525 104332831 -13529796 - AluJb SINE Alu -6 306 1 359 296 0 0 chr9 104332947 104333035 -13529592 - L2 LINE L2 -1 3312 3225 276 286 116 18 chr9 104333113 104333225 -13529402 + MIR SINE MIR 108 230 -32 2190 97 10 3 chr9 104333292 104333580 -13529047 - AluSg1 SINE Alu -16 293 4 230 284 15 0 chr9 104334129 104334196 -13528431 - L1ME4a LINE L1 -83 6038 5971 2457 130 73 7 chr9 104334229 104334653 -13527974 - Tigger2 DNA MER2_type 0 2718 2267 459 145 0 0 chr9 104334637 104334706 -13527921 - Tigger2 DNA MER2_type -2649 69 1 * 280 230 43 50 chr9 104334715 104334854 -13527773 - L1ME4a LINE L1 -3 6118 5981 293 294 0 0 chr9 104334944 104335046 -13527581 - L1ME4a LINE L1 -370 5751 5650 185 244 67 0 chr9 104335619 104335664 -13526963 - L2 LINE L2 -3 3310 3263 1421 108 0 0 chr9 104335973 104336149 -13526478 - AluSx SINE Alu -136 176 1 184 182 0 0 chr9 104336181 104336214 -13526413 + L2 LINE L2 3276 3308 -5 1517 192 16 39 chr9 104336350 104336658 -13525969 + AluJo SINE Alu 1 301 -11 340 315 151 30 chr9 104336904 104337202 -13525425 - L2 LINE L2 -420 2894 2561 1651 121 65 0 chr9 104337209 104337499 -13525128 + L1MB2 LINE L1 5830 6138 -33 1860 233 108 24 chr9 104338070 104338587 -13524040 - L1ME3 LINE L1 -1 6161 5566 2343 88 0 0 chr9 104338587 104338882 -13523745 + AluSg SINE Alu 1 295 -15 1860 233 108 24 chr9 104338882 104339078 -13523549 - L1ME3 LINE L1 -596 5566 5388 1639 167 4 22 chr9 104339292 104339562 -13523065 + AluJo SINE Alu 1 265 -47 321 200 0 0 chr9 104339754 104339809 -13522818 + FRAM/FAM SINE Alu 2 56 -110 812 244 70 0 chr9 104340224 104340425 -13522202 + MIR SINE MIR 48 262 0 946 233 42 53 chr9 104340596 104340858 -13521769 + MIR SINE MIR 4 262 0 405 287 147 22 chr9 104341544 104341680 -13520947 + L2 LINE L2 3112 3264 -8 1841 163 3 17 chr9 104343515 104343815 -13518812 - AluJb SINE Alu -16 296 1 448 224 54 34 chr9 104343827 104343974 -13518653 - L1ME3 LINE L1 -8 6154 6005 619 176 109 8 chr9 104345187 104345306 -13517321 + FLAM_A SINE Alu 1 131 -2 1947 149 3 23 chr9 104345861 104346170 -13516457 + AluSx SINE Alu 1 303 -9 411 137 0 0 chr9 104346317 104346390 -13516237 + (TG)n Simple_repeat Simple_repeat 2 74 0 6002 166 68 37 chr9 104346995 104347591 -13515036 + Charlie1a DNA MER1_type 1 577 -2184 2311 120 0 0 chr9 104347591 104347892 -13514735 - AluSg SINE Alu -9 301 1 6002 166 68 37 chr9 104347892 104348221 -13514406 + Charlie1a DNA MER1_type 577 894 -1867 2183 87 0 24 chr9 104348221 104348554 -13514073 - AluSq SINE Alu 0 326 1 6002 166 68 37 chr9 104348554 104349037 -13513590 + Charlie1a DNA MER1_type 894 1455 0 1702 190 24 0 chr9 104349181 104349471 -13513156 + AluJo SINE Alu 6 302 -10 225 164 73 18 chr9 104349471 104349526 -13513101 + GA-rich Low_complexity Low_complexity 1 58 0 198 338 14 42 chr9 104349529 104349600 -13513027 - MIR3 SINE MIR -136 72 4 2334 99 3 0 chr9 104349765 104350059 -13512568 + AluSq SINE Alu 2 296 -17 401 216 105 42 chr9 104350062 104350182 -13512445 - MIR SINE MIR -61 147 40 186 309 106 11 chr9 104351322 104351416 -13511211 + MIR3 SINE MIR 60 162 -46 332 327 75 0 chr9 104351447 104351554 -13511073 - MER5A DNA MER1_type -22 167 53 1598 185 0 17 chr9 104351595 104351882 -13510745 - AluJb SINE Alu -30 282 1 1994 130 3 7 chr9 104352957 104353257 -13509370 - AluJb SINE Alu -13 299 1 1523 163 54 34 chr9 104353360 104353540 -13509087 - AluJo SINE Alu -8 304 114 264 30 0 0 chr9 104353540 104353573 -13509054 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 1523 163 54 34 chr9 104353573 104353686 -13508941 - AluJo SINE Alu -198 114 5 1551 142 78 7 chr9 104354108 104354292 -13508335 - MER44D DNA MER2_type -1904 587 418 1812 156 10 26 chr9 104354292 104354599 -13508028 + AluJo SINE Alu 1 302 -10 1551 142 78 7 chr9 104354599 104354709 -13507918 - MER44D DNA MER2_type -2073 418 2 301 200 78 22 chr9 104355139 104355229 -13507398 - MIR SINE MIR -51 211 117 549 210 141 3 chr9 104355463 104355607 -13507020 - MIR SINE MIR -36 172 5 205 237 34 17 chr9 104355850 104355909 -13506718 - MIR SINE MIR -99 163 104 220 369 55 84 chr9 104355935 104356209 -13506418 + L2 LINE L2 2919 3184 -88 858 184 33 0 chr9 104356794 104356946 -13505681 - FRAM SINE Alu -8 158 2 243 304 217 17 chr9 104358227 104358342 -13504285 + MIR3 SINE MIR 10 147 -61 564 263 129 19 chr9 104359383 104359592 -13503035 + MIR SINE MIR 31 262 0 23 86 0 0 chr9 104360427 104360485 -13502142 + AT_rich Low_complexity Low_complexity 1 58 0 294 353 8 17 chr9 104361183 104361302 -13501325 + MER5B DNA MER1_type 1 118 -60 1887 126 43 20 chr9 104361621 104361922 -13500705 - AluSx SINE Alu -4 308 1 2025 147 3 0 chr9 104362773 104363072 -13499555 - AluSx SINE Alu -10 302 3 1059 98 0 0 chr9 104363077 104363210 -13499417 - AluSq/x SINE Alu -179 133 1 181 290 47 47 chr9 104363296 104363403 -13499224 - L2 LINE L2 -832 2482 2376 234 312 120 60 chr9 104363676 104363926 -13498701 - L2 LINE L2 -191 3081 2817 571 240 158 31 chr9 104364014 104364210 -13498417 + MIR SINE MIR 12 232 -30 253 294 77 7 chr9 104364312 104364455 -13498172 + L1ME4a LINE L1 5967 6119 -2 319 47 0 0 chr9 104364478 104364521 -13498106 + U5 snRNA snRNA 2 44 -72 240 280 93 84 chr9 104365255 104365362 -13497265 + MIR SINE MIR 37 144 -64 2318 196 76 71 chr9 104365874 104366109 -13496518 - L1MB7 LINE L1 -10 6174 5942 1803 133 31 34 chr9 104366109 104366402 -13496225 - AluSx SINE Alu -20 292 1 2318 196 76 71 chr9 104366402 104366456 -13496171 - L1MB7 LINE L1 -242 5942 5890 2052 108 0 82 chr9 104366456 104366771 -13495856 - AluSx SINE Alu -21 291 3 2318 196 76 71 chr9 104366771 104367007 -13495620 - L1MB7 LINE L1 -294 5890 5657 2248 128 0 0 chr9 104367007 104367313 -13495314 - AluSx SINE Alu -6 306 1 2318 196 76 71 chr9 104367313 104367638 -13494989 - L1MB7 LINE L1 -527 5657 5335 1266 144 84 4 chr9 104367638 104367888 -13494739 - L1MB4 LINE L1 -1 6179 5910 2318 196 76 71 chr9 104367888 104367979 -13494648 - L1MB7 LINE L1 -849 5335 5246 2316 91 0 3 chr9 104367979 104368277 -13494350 - AluSq SINE Alu -16 297 1 2318 196 76 71 chr9 104368277 104368734 -13493893 - L1MB7 LINE L1 -938 5246 4770 2051 178 64 0 chr9 104368734 104369127 -13493500 + MSTB LTR MaLR 1 418 -8 2079 135 7 20 chr9 104369154 104369457 -13493170 - AluSx SINE Alu -13 299 1 1767 160 23 7 chr9 104369460 104369760 -13492867 - AluJo SINE Alu -7 305 1 801 272 37 11 chr9 104369805 104370077 -13492550 - L1MB7 LINE L1 -2302 3844 3566 1732 141 20 36 chr9 104370565 104370869 -13491758 + AluJo SINE Alu 1 299 -13 2430 73 3 3 chr9 104370987 104371288 -13491339 + AluSp SINE Alu 1 301 -12 1038 188 6 0 chr9 104371508 104371678 -13490949 - AluJb SINE Alu -22 290 120 1287 82 0 6 chr9 104372427 104372632 -13489995 - AluSg/x SINE Alu 0 318 115 2103 96 3 20 chr9 104372732 104373025 -13489602 + AluY SINE Alu 23 310 -1 2060 139 3 3 chr9 104373055 104373356 -13489271 + AluSg SINE Alu 1 301 -9 685 119 18 9 chr9 104375264 104375373 -13487254 - AluJb SINE Alu -194 118 9 780 245 88 47 chr9 104376721 104377105 -13485522 - L1ME4a LINE L1 -71 6050 1230 791 244 91 18 chr9 104377134 104377355 -13485272 + MIR SINE MIR 15 251 -11 294 159 28 47 chr9 104377909 104378016 -13484611 + (TA)n Simple_repeat Simple_repeat 2 106 0 1435 155 114 19 chr9 104378047 104378311 -13484316 + AluJb SINE Alu 2 290 -22 279 270 117 24 chr9 104378996 104379163 -13483464 - MIR SINE MIR -27 235 51 22 56 0 0 chr9 104380031 104380067 -13482560 + AT_rich Low_complexity Low_complexity 1 36 0 646 252 20 120 chr9 104380603 104380687 -13481940 + MER102b DNA MER1_type 34 125 -1303 2137 109 3 14 chr9 104380687 104380980 -13481647 + AluSq SINE Alu 1 290 -23 646 252 20 120 chr9 104380980 104381120 -13481507 + MER102b DNA MER1_type 125 215 -1213 1711 164 11 7 chr9 104381120 104381401 -13481226 - AluJb SINE Alu -30 282 1 646 252 20 120 chr9 104381401 104381516 -13481111 + MER102b DNA MER1_type 215 340 -1 32 0 0 0 chr9 104381630 104381662 -13480965 + AT_rich Low_complexity Low_complexity 1 32 0 1595 133 109 8 chr9 104381664 104381920 -13480707 + AluJb SINE Alu 1 282 -30 1254 118 0 21 chr9 104382047 104382234 -13480393 + AluJb SINE Alu 129 311 -1 200 331 166 0 chr9 104382881 104383026 -13479601 + MIR SINE MIR 52 220 -42 647 218 160 24 chr9 104383097 104383303 -13479324 - MIR SINE MIR -10 252 19 2661 227 84 45 chr9 104383305 104384101 -13478526 - L1ME2 LINE L1 -1 6163 5400 1950 162 0 16 chr9 104384101 104384415 -13478212 + AluSx SINE Alu 1 309 -3 2661 227 84 45 chr9 104384415 104384821 -13477806 - L1ME2 LINE L1 -764 5400 5011 1932 149 0 7 chr9 104384821 104385117 -13477510 - AluJb SINE Alu -18 294 1 2661 227 84 45 chr9 104385117 104385475 -13477152 - L1ME2 LINE L1 -1153 5011 4668 1629 183 0 53 chr9 104385475 104385797 -13476830 - AluJo SINE Alu -7 305 1 2661 227 84 45 chr9 104385797 104385818 -13476809 - L1ME2 LINE L1 -1496 4668 4649 2225 106 0 13 chr9 104385818 104386120 -13476507 - AluSc SINE Alu -11 298 1 2661 227 84 45 chr9 104386120 104386593 -13476034 - L1ME2 LINE L1 -1515 4649 4029 4984 196 59 7 chr9 104386627 104387993 -13474634 - L1MB3 LINE L1 -9 6174 4726 592 208 51 93 chr9 104387994 104388306 -13474321 - L1ME2 LINE L1 -2120 4026 3728 2006 139 3 0 chr9 104388370 104388665 -13473962 - AluSx SINE Alu -16 296 1 613 196 0 0 chr9 104389085 104389192 -13473435 + FLAM_A SINE Alu 20 126 -16 252 0 0 0 chr9 104389776 104389804 -13472823 + (T)n Simple_repeat Simple_repeat 1 28 0 204 40 0 0 chr9 104390572 104390597 -13472030 + (TG)n Simple_repeat Simple_repeat 2 26 0 2112 106 3 39 chr9 104391026 104391338 -13471289 - AluSq SINE Alu -10 303 3 265 264 28 28 chr9 104392564 104392670 -13469957 + L1M4 LINE L1 432 537 -6318 1885 241 99 36 chr9 104393242 104394176 -13468451 + L1M4 LINE L1 1210 2083 -4874 2087 98 10 24 chr9 104394176 104394472 -13468155 + AluSc SINE Alu 1 292 -17 1885 241 99 36 chr9 104394472 104394921 -13467706 + L1M4 LINE L1 2083 2502 -4455 2219 104 7 0 chr9 104394921 104395209 -13467418 + AluSx SINE Alu 6 295 -17 1885 241 99 36 chr9 104395209 104395824 -13466803 + L1M4 LINE L1 2502 3479 -3478 665 194 62 95 chr9 104395829 104395956 -13466671 + L1M4 LINE L1 3609 3739 -3218 1696 148 18 4 chr9 104395956 104396233 -13466394 + AluJb SINE Alu 1 281 -31 665 194 62 95 chr9 104396233 104396430 -13466197 + L1M4 LINE L1 3739 3922 -3035 853 136 0 0 chr9 104396453 104396571 -13466056 + FRAM SINE Alu 37 154 -22 824 254 55 6 chr9 104396572 104396883 -13465744 + L1M4 LINE L1 3900 4225 -2732 2296 110 0 0 chr9 104397212 104397512 -13465115 + AluSg SINE Alu 1 300 -10 339 179 30 0 chr9 104397591 104397658 -13464969 + Tigger2 DNA MER2_type 1 69 -2649 * 2453 139 52 2 chr9 104397648 104398073 -13464554 + Tigger2 DNA MER2_type 2273 2718 0 2335 100 0 0 chr9 104398820 104399119 -13463508 - AluSq SINE Alu -14 299 1 448 284 147 5 chr9 104399567 104399757 -13462870 + MIR SINE MIR 30 246 -16 310 299 149 54 chr9 104400234 104400495 -13462132 + L2 LINE L2 3015 3300 -13 2142 142 0 0 chr9 104400534 104400844 -13461783 + AluSx SINE Alu 2 311 -1 1950 117 4 7 chr9 104400970 104401243 -13461384 - AluSx SINE Alu -18 294 23 240 380 0 0 chr9 104401464 104401535 -13461092 + L2 LINE L2 3128 3198 -74 900 184 116 6 chr9 104401826 104402120 -13460507 - MLT1A1 LTR MaLR 0 365 1 233 300 29 0 chr9 104402500 104402570 -13460057 + MLT1K LTR MaLR 3 74 -514 357 244 22 67 chr9 104402625 104402683 -13459944 + MIR SINE MIR 134 193 -69 1977 146 7 7 chr9 104402683 104402978 -13459649 + AluJb SINE Alu 1 295 -17 357 244 22 67 chr9 104402978 104403054 -13459573 + MIR SINE MIR 193 262 0 2135 118 3 0 chr9 104403705 104404001 -13458626 + AluSx SINE Alu 1 297 -15 619 106 11 11 chr9 104404001 104404095 -13458532 + AluSq/x SINE Alu 43 136 -177 2160 112 0 0 chr9 104404095 104404400 -13458227 + AluSg SINE Alu 1 310 0 2083 113 0 39 chr9 104404708 104404844 -13457783 + AluSx SINE Alu 1 141 -171 2137 110 7 13 chr9 104404844 104405152 -13457475 + AluSg SINE Alu 1 306 -4 2083 113 0 39 chr9 104405152 104405325 -13457302 + AluSx SINE Alu 141 298 -14 987 167 0 6 chr9 104405579 104405735 -13456892 - AluJb SINE Alu -16 296 142 206 298 102 33 chr9 104406162 104406407 -13456220 + L2 LINE L2 2808 3075 -197 912 176 80 0 chr9 104407164 104407340 -13455287 + MER3 DNA MER1_type 2 191 -18 571 102 11 0 chr9 104407657 104407745 -13454882 + L1MB3 LINE L1 6088 6176 -7 437 308 51 13 chr9 104407844 104408000 -13454627 + MIR3 SINE MIR 12 173 -35 2349 87 10 0 chr9 104408402 104408712 -13453915 + AluSp SINE Alu 1 313 0 2295 100 0 7 chr9 104408716 104409026 -13453601 + AluY SINE Alu 1 308 -3 1785 137 32 57 chr9 104410066 104410381 -13452246 + AluJb SINE Alu 1 307 -5 206 260 260 10 chr9 104410447 104410543 -13452084 - MIR SINE MIR -12 250 131 261 266 73 0 chr9 104411180 104411289 -13451338 + L1ME LINE L1 5718 5834 -287 2425 77 3 0 chr9 104411511 104411811 -13450816 + AluSp SINE Alu 1 301 -12 2077 104 10 26 chr9 104411822 104412131 -13450496 + AluSx SINE Alu 1 304 -8 2238 116 3 0 chr9 104412429 104412732 -13449895 + AluSx SINE Alu 2 305 -7 221 331 97 32 chr9 104412908 104413032 -13449595 - L2 LINE L2 -8 3305 3174 1046 158 0 29 chr9 104413309 104413480 -13449147 - AluJb SINE Alu -10 302 137 368 294 53 75 chr9 104413557 104413877 -13448750 + L2 LINE L2 2179 2491 -823 450 246 36 29 chr9 104414660 104414700 -13447927 + MIR SINE MIR 124 162 -100 2530 49 0 16 chr9 104414700 104415005 -13447622 + AluY SINE Alu 1 300 -11 450 246 36 29 chr9 104415005 104415102 -13447525 + MIR SINE MIR 162 262 0 2322 94 3 3 chr9 104415102 104415400 -13447227 + AluSp SINE Alu 1 298 -15 1014 166 12 0 chr9 104415680 104415843 -13446784 - FAM SINE Alu -6 169 5 2346 50 0 0 chr9 104416601 104416909 -13445718 + AluY SINE Alu 1 308 0 323 275 214 8 chr9 104417109 104417240 -13445387 + MIR SINE MIR 20 177 -85 2053 134 7 7 chr9 104418115 104418421 -13444206 + AluSx SINE Alu 5 310 -2 29 90 0 0 chr9 104418451 104418529 -13444098 + AT_rich Low_complexity Low_complexity 1 78 0 22 35 0 0 chr9 104418595 104418624 -13444003 + AT_rich Low_complexity Low_complexity 1 29 0 229 230 40 27 chr9 104419017 104419091 -13443536 + GA-rich Low_complexity Low_complexity 4 78 0 209 283 38 0 chr9 104419126 104419179 -13443448 + MIR SINE MIR 89 143 -65 909 226 194 18 chr9 104419198 104419641 -13442986 - MER113 DNA MER1_type? 0 521 1 310 258 164 23 chr9 104419679 104419807 -13442820 + MIR SINE MIR 111 256 -6 190 260 208 0 chr9 104420889 104420966 -13441661 - MIR SINE MIR -92 170 78 193 256 154 83 chr9 104425030 104425186 -13437441 - MIR3 SINE MIR -23 185 19 2167 122 0 3 chr9 104425881 104426177 -13436450 + AluSg SINE Alu 1 295 -15 1880 126 0 0 chr9 104426191 104426462 -13436165 + AluSx SINE Alu 40 310 -2 400 215 255 0 chr9 104426737 104426886 -13435741 + MIR SINE MIR 74 260 -2 198 245 122 0 chr9 104426891 104426940 -13435687 - MIR SINE MIR -73 135 81 3595 178 63 8 chr9 104428277 104429153 -13433474 - Charlie1 DNA MER1_type -24 2737 1814 3006 185 88 10 chr9 104429530 104430232 -13432395 - Charlie1a DNA MER1_type -698 757 1 2382 104 0 0 chr9 104430634 104430941 -13431686 + AluSx SINE Alu 2 308 -4 228 67 0 0 chr9 104434237 104434267 -13428360 + (A)n Simple_repeat Simple_repeat 1 30 0 21 0 0 0 chr9 104435979 104436000 -13426627 + AT_rich Low_complexity Low_complexity 1 21 0 215 276 17 35 chr9 104437361 104437477 -13425150 + G-rich Low_complexity Low_complexity 4 117 0 192 149 0 0 chr9 104437749 104437796 -13424831 + (CCGCG)n Simple_repeat Simple_repeat 1 47 0 223 130 145 6 chr9 104438515 104438570 -13424057 + MIR3 SINE MIR 100 157 -51 185 324 58 69 chr9 104439240 104439413 -13423214 + L2 LINE L2 2916 3086 -186 2279 92 3 0 chr9 104439502 104439808 -13422819 + AluSp SINE Alu 2 308 -5 191 240 40 0 chr9 104439859 104439909 -13422718 + L3 LINE CR1 1424 1475 -102 281 286 12 12 chr9 104440098 104440182 -13422445 + L2 LINE L2 3230 3313 0 318 294 86 31 chr9 104440195 104440358 -13422269 + MIR SINE MIR 86 257 -5 256 331 52 7 chr9 104440497 104440633 -13421994 - MIR SINE MIR -17 245 104 453 136 0 62 chr9 104440784 104440865 -13421762 + AluS SINE Alu 2 77 -236 309 268 111 42 chr9 104440865 104441055 -13421572 - L2 LINE L2 -266 3006 2804 2279 87 0 3 chr9 104441435 104441735 -13420892 + AluSg SINE Alu 5 303 -7 612 182 33 8 chr9 104441826 104441947 -13420680 - MER5A DNA MER1_type 0 189 66 1132 137 11 26 chr9 104441947 104442119 -13420508 - AluSg/x SINE Alu -6 306 136 1462 105 9 22 chr9 104442119 104442348 -13420279 - AluSg/x SINE Alu -2 310 85 1132 137 11 26 chr9 104442348 104442365 -13420262 - AluSg/x SINE Alu -176 136 120 289 175 35 0 chr9 104442365 104442422 -13420205 - MER5A DNA MER1_type -130 59 1 1395 203 28 0 chr9 104442545 104442836 -13419791 + AluJo SINE Alu 1 299 -13 1671 161 0 25 chr9 104442837 104443116 -13419511 + AluJb SINE Alu 2 273 -39 352 300 62 0 chr9 104443313 104443443 -13419184 - MIR SINE MIR -70 192 55 22 0 0 0 chr9 104443567 104443589 -13419038 + GC_rich Low_complexity Low_complexity 1 22 0 202 246 18 0 chr9 104443769 104443826 -13418801 + (CTG)n Simple_repeat Simple_repeat 1 58 0 295 340 110 30 chr9 104444384 104444573 -13418054 + MIR SINE MIR 14 221 -41 2544 36 0 7 chr9 104444573 104444880 -13417747 + AluY SINE Alu 1 305 -6 858 165 0 0 chr9 104444927 104445060 -13417567 + FLAM_C SINE Alu 1 133 0 1316 148 0 41 chr9 104445079 104445322 -13417305 + AluSg/x SINE Alu 80 312 0 416 303 16 0 chr9 104445636 104445758 -13416869 + MIR SINE MIR 18 141 -67 189 231 26 64 chr9 104446741 104446819 -13415808 + MIR SINE MIR 69 143 -119 208 358 49 24 chr9 104447234 104447357 -13415270 - MIR SINE MIR -30 232 107 193 299 234 22 chr9 104447638 104447916 -13414711 - L2 LINE L2 -685 2629 2293 2128 111 3 0 chr9 104448007 104448305 -13414322 + AluSx SINE Alu 1 299 -13 263 261 0 0 chr9 104448752 104448821 -13413806 + MIR SINE MIR 80 148 -114 513 282 114 18 chr9 104448902 104449126 -13413501 - MIR SINE MIR -15 247 10 1868 126 40 0 chr9 104449685 104449963 -13412664 + AluJb SINE Alu 1 289 -23 503 226 161 0 chr9 104449982 104450137 -13412490 - MIR SINE MIR 0 262 83 844 278 101 23 chr9 104450196 104450647 -13411980 - L2 LINE L2 -2 3311 2777 2273 88 3 25 chr9 104450681 104450998 -13411629 - AluSx SINE Alu -2 310 1 2513 145 40 55 chr9 104451091 104451439 -13411188 - L1MB5 LINE L1 -25 6149 5797 2161 126 0 0 chr9 104451439 104451749 -13410878 - AluSx SINE Alu -2 310 1 2513 145 40 55 chr9 104451749 104451882 -13410745 - L1MB5 LINE L1 -377 5797 5674 2592 42 0 10 chr9 104451882 104452195 -13410432 - AluY SINE Alu -1 310 1 2513 145 40 55 chr9 104452195 104452256 -13410371 - L1MB5 LINE L1 -500 5674 5614 360 145 40 13 chr9 104452356 104452432 -13410195 - AluS SINE Alu -223 78 1 611 161 27 0 chr9 104452433 104452556 -13410071 - L1M4 LINE L1 -497 5677 5552 1635 183 4 0 chr9 104452567 104452846 -13409781 + AluJo SINE Alu 3 282 -30 207 0 0 0 chr9 104452849 104452872 -13409755 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 1909 146 0 0 chr9 104452873 104453161 -13409466 + AluJb SINE Alu 1 288 -24 2427 48 0 3 chr9 104453171 104453465 -13409162 + AluY SINE Alu 1 293 -18 441 0 0 0 chr9 104453482 104453531 -13409096 + (CA)n Simple_repeat Simple_repeat 2 50 0 354 260 125 0 chr9 104454051 104454155 -13408472 - MIR SINE MIR -90 172 56 2080 112 3 0 chr9 104454255 104454591 -13408036 - AluSx SINE Alu 0 337 1 343 270 40 0 chr9 104454598 104454698 -13407929 - MIR SINE MIR -77 185 82 2153 109 0 3 chr9 104454751 104455054 -13407573 + AluSx SINE Alu 1 302 -10 2067 107 0 4 chr9 104455058 104455366 -13407261 + AluSg SINE Alu 1 307 0 212 305 0 0 chr9 104455432 104455491 -13407136 - MER91A DNA MER1_type -73 123 65 249 288 0 14 chr9 104455548 104455621 -13407006 - MIR SINE MIR -190 72 1 1803 178 10 0 chr9 104455654 104455957 -13406670 - AluJo SINE Alu -1 311 6 1848 209 115 5 chr9 104456026 104456442 -13406185 - LTR40b LTR ERVL 0 462 1 397 253 37 74 chr9 104456773 104456906 -13405721 - MIR SINE MIR -66 196 69 1843 114 7 31 chr9 104456906 104457195 -13405432 - AluSx SINE Alu -18 294 13 397 253 37 74 chr9 104457195 104457223 -13405404 - MIR SINE MIR -193 69 41 226 266 182 44 chr9 104457786 104457989 -13404638 - L2 LINE L2 -85 3187 2957 1058 236 61 35 chr9 104458067 104458187 -13404440 - MER5C DNA MER1_type 0 324 209 2173 118 0 3 chr9 104458187 104458500 -13404127 + AluSx SINE Alu 1 312 0 1058 236 61 35 chr9 104458500 104458692 -13403935 - MER5C DNA MER1_type -115 209 4 278 368 28 7 chr9 104458701 104458845 -13403782 + L2 LINE L2 2907 3053 -219 416 261 45 0 chr9 104460286 104460397 -13402230 + MIR SINE MIR 49 164 -98 549 284 34 51 chr9 104460398 104460476 -13402151 - LTR16A1 LTR ERVL -1 456 378 1511 182 26 42 chr9 104460476 104460789 -13401838 + AluJo SINE Alu 1 308 -4 549 284 34 51 chr9 104460789 104461033 -13401594 - LTR16A1 LTR ERVL -79 378 156 357 277 11 0 chr9 104461146 104461240 -13401387 + MIR SINE MIR 156 250 -12 2190 122 0 0 chr9 104461343 104461654 -13400973 - AluSx SINE Alu -1 311 1 1997 99 49 0 chr9 104462229 104462513 -13400114 + AluSx SINE Alu 1 298 -14 1167 161 18 40 chr9 104463468 104463692 -13398935 + MER20 DNA MER1_type 1 219 0 1576 168 84 3 chr9 104463728 104464013 -13398614 - AluJb SINE Alu -4 308 1 461 260 46 30 chr9 104464056 104464231 -13398396 - MIR SINE MIR -63 145 19 1863 117 3 55 chr9 104464952 104465260 -13397367 + AluSx SINE Alu 1 292 -20 1239 103 6 6 chr9 104465284 104465459 -13397168 + AluSq SINE Alu 1 175 -138 246 128 0 0 chr9 104465459 104465498 -13397129 + (A)n Simple_repeat Simple_repeat 1 39 0 316 338 38 13 chr9 104465498 104465655 -13396972 + L1MC4a LINE L1 5752 5912 -1896 380 313 18 18 chr9 104466932 104467044 -13395583 - MER91A DNA MER1_type -84 112 1 255 250 0 26 chr9 104467191 104467267 -13395360 - MIR SINE MIR -116 92 19 658 167 0 26 chr9 104467621 104467735 -13394892 + MER81 DNA DNA 3 113 -1 303 337 11 0 chr9 104468710 104468805 -13393822 - L2 LINE L2 -86 3186 3091 2167 115 0 0 chr9 104469645 104469941 -13392686 - AluSq SINE Alu -17 296 1 1953 147 0 6 chr9 104469985 104470297 -13392330 - AluJb SINE Alu -2 310 1 258 95 0 0 chr9 104470985 104471027 -13391600 + (CCA)n Simple_repeat Simple_repeat 1 42 0 377 238 12 12 chr9 104471089 104471173 -13391454 + MER58 DNA MER1_type 1 84 -131 1936 109 0 0 chr9 104471174 104471441 -13391186 + AluSx SINE Alu 1 267 -45 2026 113 27 0 chr9 104471443 104471735 -13390892 - AluSx SINE Alu -12 300 1 537 297 94 36 chr9 104471906 104472320 -13390307 + L1ME4a LINE L1 5550 5987 -134 1027 133 13 0 chr9 104472345 104472503 -13390124 + L1PB2 LINE L1 5989 6148 -3 1709 125 0 8 chr9 104472534 104472790 -13389837 - AluSx SINE Alu 0 312 59 212 175 0 0 chr9 104472910 104472950 -13389677 + A-rich Low_complexity Low_complexity 1 40 0 1369 128 167 17 chr9 104473026 104473314 -13389313 - L1MA8 LINE L1 -24 6267 5937 1945 114 44 3 chr9 104473344 104473641 -13388986 - AluSg SINE Alu -1 309 1 1791 159 0 32 chr9 104473643 104473957 -13388670 - AluJo SINE Alu -8 304 1 2010 114 23 10 chr9 104474008 104474316 -13388311 - AluSq SINE Alu -1 312 1 226 258 45 0 chr9 104474899 104474965 -13387662 - L2 LINE L2 -38 3234 3166 193 294 186 0 chr9 104475003 104475105 -13387522 - MIR SINE MIR -12 250 130 566 333 50 31 chr9 104475237 104475558 -13387069 - L2 LINE L2 -96 3176 2850 2095 108 0 35 chr9 104475607 104475921 -13386706 + AluSx SINE Alu 1 303 -9 528 287 10 20 chr9 104476077 104476272 -13386355 - L2 LINE L2 -173 3099 2907 184 342 167 0 chr9 104476275 104476389 -13386238 + MIR SINE MIR 47 179 -83 355 308 49 14 chr9 104477317 104477460 -13385167 - MIR SINE MIR -24 238 91 310 286 116 0 chr9 104478541 104478653 -13383974 - MIR3 SINE MIR -21 187 63 2333 67 3 3 chr9 104478896 104479194 -13383433 - AluSq SINE Alu -15 298 1 253 287 66 49 chr9 104479651 104479673 -13382954 - MIR SINE MIR -94 168 148 2182 113 13 0 chr9 104479673 104479982 -13382645 - AluSq SINE Alu 0 313 1 253 287 66 49 chr9 104479982 104480081 -13382546 - MIR SINE MIR -114 148 45 338 247 200 0 chr9 104480085 104480235 -13382392 - MIR SINE MIR -3 259 80 198 0 0 0 chr9 104480595 104480617 -13382010 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 200 192 55 41 chr9 104480997 104481070 -13381557 + MIR3 SINE MIR 2 75 -133 366 333 39 19 chr9 104481185 104481341 -13381286 - MIR SINE MIR -76 186 28 444 194 0 0 chr9 104481693 104481765 -13380862 + AluSx SINE Alu 2 73 -239 1481 92 33 42 chr9 104481912 104482152 -13380475 + AluSx SINE Alu 73 310 0 1023 128 0 6 chr9 104482249 104482405 -13380222 + AluJo SINE Alu 1 155 -157 24 0 0 0 chr9 104482405 104482429 -13380198 + AT_rich Low_complexity Low_complexity 1 24 0 180 111 0 0 chr9 104482677 104482704 -13379923 + (A)n Simple_repeat Simple_repeat 1 27 0 2398 66 0 3 chr9 104482708 104483013 -13379614 + AluY SINE Alu 1 304 -7 427 260 54 117 chr9 104483079 104483413 -13379214 + MER113 DNA MER1_type? 4 303 -218 2270 92 16 0 chr9 104483413 104483717 -13378910 + AluSx SINE Alu 1 309 -3 427 260 54 117 chr9 104483717 104483843 -13378784 + MER113 DNA MER1_type? 303 435 -86 1207 184 0 5 chr9 104484300 104484506 -13378121 + AluJb SINE Alu 7 211 -101 2127 114 0 0 chr9 104484523 104484820 -13377807 - AluSx SINE Alu -15 297 1 192 313 168 38 chr9 104484836 104484967 -13377660 + L2 LINE L2 3116 3263 -9 535 290 45 23 chr9 104486047 104486223 -13376404 - MIR SINE MIR -21 241 62 286 263 63 11 chr9 104486272 104486367 -13376260 + MER5B DNA MER1_type 13 112 -66 1619 166 3 11 chr9 104486381 104486699 -13375928 - AluJb SINE Alu 0 316 1 1995 129 7 0 chr9 104486711 104487006 -13375621 - AluSg SINE Alu -13 297 1 1085 81 0 0 chr9 104487006 104487142 -13375485 - AluSq/x SINE Alu -176 136 1 206 264 0 0 chr9 104487155 104487208 -13375419 - MER5B DNA MER1_type -125 53 1 395 229 45 156 chr9 104488069 104488180 -13374447 + MIR SINE MIR 34 156 -106 232 48 48 0 chr9 104488180 104488222 -13374405 + (TTG)n Simple_repeat Simple_repeat 2 45 0 1756 129 41 0 chr9 104488224 104488495 -13374132 - AluSg SINE Alu -24 286 5 395 229 45 156 chr9 104488495 104488624 -13374003 + MIR SINE MIR 157 250 -12 216 314 51 34 chr9 104488970 104489088 -13373539 + L2 LINE L2 2600 2719 -595 1641 182 0 32 chr9 104489088 104489396 -13373231 + AluJo SINE Alu 1 298 -14 2028 134 7 0 chr9 104489400 104489698 -13372929 + AluSx SINE Alu 1 300 -12 2232 109 0 0 chr9 104489747 104490049 -13372578 + AluSg SINE Alu 1 302 -8 1045 138 12 0 chr9 104490050 104490210 -13372417 - MSTA LTR MaLR -266 162 1 2100 109 0 10 chr9 104490532 104490836 -13371791 - AluSx SINE Alu -11 301 1 995 133 0 0 chr9 104490841 104490992 -13371635 - FRAM SINE Alu -17 159 9 3272 188 48 58 chr9 104491051 104491320 -13371307 - L1MD3 LINE L1 0 8042 7772 2030 126 17 0 chr9 104491320 104491614 -13371013 + AluSx SINE Alu 1 299 -13 3272 188 48 58 chr9 104491614 104491684 -13370943 - L1MD3 LINE L1 -270 7772 7703 1929 151 0 19 chr9 104491684 104492001 -13370626 - AluSx SINE Alu -1 311 1 3272 188 48 58 chr9 104492001 104492365 -13370262 - L1MD3 LINE L1 -339 7703 7359 1544 160 0 54 chr9 104492365 104492551 -13370076 - AluJb SINE Alu -7 305 139 1152 92 0 0 chr9 104492551 104492714 -13369913 + (TA)n Simple_repeat Simple_repeat 2 164 0 1544 160 0 54 chr9 104492714 104492821 -13369806 - AluJb SINE Alu -173 139 28 3272 188 48 58 chr9 104492821 104493019 -13369608 - L1MD3 LINE L1 -683 7359 7161 1542 118 9 0 chr9 104493021 104493241 -13369386 + AluJb SINE Alu 3 224 -88 244 274 0 16 chr9 104493519 104493581 -13369046 + L2 LINE L2 3203 3263 -9 204 262 155 0 chr9 104493789 104493873 -13368754 - MIR SINE MIR 0 262 166 2210 110 0 0 chr9 104493880 104494180 -13368447 + AluSx SINE Alu 1 300 -12 246 105 0 0 chr9 104494279 104494317 -13368310 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 2051 129 0 0 chr9 104494424 104494718 -13367909 - AluJb SINE Alu -18 294 1 1632 150 131 0 chr9 104494836 104495103 -13367524 + AluSx SINE Alu 1 302 0 1528 85 0 10 chr9 104495112 104495313 -13367314 - AluSc SINE Alu -110 199 1 655 214 91 8 chr9 104495420 104495618 -13367009 + L1MB7 LINE L1 5822 6039 -145 788 160 25 27 chr9 104495622 104496235 -13366392 + CT-rich Low_complexity Low_complexity 1 612 0 264 224 45 0 chr9 104496311 104496378 -13366249 + L2 LINE L2 3193 3262 -10 2784 22 0 0 chr9 104497015 104497333 -13365294 - AluYb8 SINE Alu 0 318 1 433 296 154 42 chr9 104497430 104497761 -13364866 - L2 LINE L2 -1 3271 2904 868 284 26 4 chr9 104497767 104497999 -13364628 + MIR SINE MIR 13 249 -13 2175 93 0 16 chr9 104498136 104498447 -13364180 + AluSc SINE Alu 1 306 -3 426 197 20 0 chr9 104498924 104499022 -13363605 - MIR SINE MIR -58 150 73 2132 117 0 0 chr9 104499139 104499437 -13363190 + AluSq SINE Alu 3 300 -13 726 289 20 52 chr9 104499940 104500129 -13362498 + MIR SINE MIR 22 216 -46 2317 91 0 0 chr9 104500129 104500426 -13362201 + AluSx SINE Alu 1 297 -15 2095 113 7 0 chr9 104500428 104500730 -13361897 + AluSx SINE Alu 1 304 -8 726 289 20 52 chr9 104500730 104500786 -13361841 + MIR SINE MIR 217 262 0 500 308 55 16 chr9 104500781 104500963 -13361664 + MIR SINE MIR 74 262 0 * 1723 173 7 7 chr9 104501038 104501338 -13361289 + AluJb SINE Alu 1 300 -12 211 250 78 0 chr9 104501643 104501707 -13360920 + MIR SINE MIR 86 154 -108 324 276 0 0 chr9 104502604 104502709 -13359918 + (TA)n Simple_repeat Simple_repeat 2 106 0 192 77 0 0 chr9 104502708 104502734 -13359893 + (GA)n Simple_repeat Simple_repeat 2 27 0 * 1659 113 40 70 chr9 104502759 104502955 -13359672 - MLT2C1 LTR ERVL -58 339 139 1871 154 7 3 chr9 104502955 104503247 -13359380 - AluSx SINE Alu -19 293 1 1988 135 0 10 chr9 104503254 104503550 -13359077 - AluSx SINE Alu -19 293 1 1659 113 40 70 chr9 104503550 104503673 -13358954 - MLT2C1 LTR ERVL -264 133 22 1778 133 19 32 chr9 104503923 104504232 -13358395 + AluSx SINE Alu 1 305 -7 261 83 0 0 chr9 104504478 104504514 -13358113 + (CATATA)n Simple_repeat Simple_repeat 1 36 0 484 173 49 0 chr9 104504518 104504599 -13358028 - AluSq SINE Alu -23 290 206 4829 125 113 104 chr9 104504602 104506107 -13356520 - pTR5 LTR ERV1 0 2438 770 769 189 0 57 chr9 104506107 104506134 -13356493 - AluJo SINE Alu -146 166 139 1686 81 0 0 chr9 104506134 104506343 -13356284 - AluSq SINE Alu -104 209 1 769 189 0 57 chr9 104506343 104506490 -13356137 - AluJo SINE Alu -173 139 2 248 325 0 0 chr9 104506919 104506999 -13355628 - MIR SINE MIR -55 153 74 190 200 44 67 chr9 104507489 104507579 -13355048 + MIR SINE MIR 49 136 -72 289 372 49 34 chr9 104508051 104508317 -13354310 + L2 LINE L2 2829 3098 -174 213 303 22 0 chr9 104508364 104508453 -13354174 + GA-rich Low_complexity Low_complexity 4 94 0 186 244 0 0 chr9 104508828 104508873 -13353754 - L2 LINE L2 -18 3254 3210 1194 160 0 0 chr9 104509142 104509336 -13353291 - AluSg/x SINE Alu -2 308 115 2228 90 3 0 chr9 104509649 104509948 -13352679 - AluSx SINE Alu -12 300 1 201 122 0 49 chr9 104509966 104510007 -13352620 + (TTTTTG)n Simple_repeat Simple_repeat 4 42 0 319 318 45 26 chr9 104510026 104510180 -13352447 - LTR16A1 LTR ERVL -247 210 54 2159 115 0 13 chr9 104510492 104510672 -13351955 - AluSg SINE Alu 0 310 134 2241 92 0 3 chr9 104510672 104510966 -13351661 - AluSg1 SINE Alu -16 293 1 2159 115 0 13 chr9 104510966 104511099 -13351528 - AluSg SINE Alu -176 134 1 472 179 0 32 chr9 104511111 104511206 -13351421 - THE1A LTR MaLR -72 283 192 1651 158 27 59 chr9 104511206 104511408 -13351219 - L1MA4 LINE L1 -7 6293 6086 1217 157 90 94 chr9 104511408 104511707 -13350920 + AluJb SINE Alu 1 298 -14 1651 158 27 59 chr9 104511707 104511759 -13350868 - L1MA4 LINE L1 -214 6086 6034 2155 111 0 0 chr9 104511759 104512056 -13350571 - AluSx SINE Alu -15 297 1 1651 158 27 59 chr9 104512056 104512137 -13350490 - L1MA4 LINE L1 -266 6034 5968 1692 149 7 23 chr9 104512137 104512475 -13350152 - AluJb SINE Alu 0 312 1 1651 158 27 59 chr9 104512475 104512511 -13350116 - L1MA4 LINE L1 -332 5968 5932 465 113 0 0 chr9 104512511 104512582 -13350045 - L1MA4 LINE L1 -844 5456 5386 1961 108 3 88 chr9 104512586 104512927 -13349700 - AluSx SINE Alu 0 312 1 710 245 71 10 chr9 104513007 104513203 -13349424 - MIR SINE MIR -24 238 31 2376 83 0 0 chr9 104513554 104513854 -13348773 + AluSq SINE Alu 5 304 -9 935 305 79 41 chr9 104513962 104513994 -13348633 + L3 LINE CR1 590 619 -958 2259 101 0 0 chr9 104513994 104514301 -13348326 - AluSq SINE Alu -6 307 1 935 305 79 41 chr9 104514301 104514776 -13347851 + L3 LINE CR1 619 1116 -461 517 62 0 0 chr9 104514777 104514841 -13347786 + Alu SINE Alu 2 65 -244 1451 127 0 0 chr9 104514982 104515194 -13347433 + AluSg/x SINE Alu 83 294 -16 186 43 0 0 chr9 104515671 104515694 -13346933 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 800 178 16 0 chr9 104515733 104515862 -13346765 - AluSq/x SINE Alu -181 132 2 259 227 55 36 chr9 104516767 104516877 -13345750 + MIR SINE MIR 34 145 -63 375 318 24 16 chr9 104516931 104517057 -13345570 + MIR SINE MIR 23 149 -113 26 0 0 0 chr9 104517852 104517878 -13344749 + GC_rich Low_complexity Low_complexity 1 26 0 201 74 0 0 chr9 104518865 104518892 -13343735 + (CA)n Simple_repeat Simple_repeat 2 28 0 1873 106 40 7 chr9 104518935 104519210 -13343417 - AluSg1 SINE Alu -20 289 6 1510 151 33 0 chr9 104519223 104519495 -13343132 - L1MB2 LINE L1 -49 6122 5842 181 191 71 0 chr9 104519513 104519555 -13343072 + MIR SINE MIR 85 129 -79 189 231 0 0 chr9 104519569 104519608 -13343019 + L2 LINE L2 3258 3296 -17 610 173 135 0 chr9 104520382 104520515 -13342112 - MER20 DNA MER1_type -68 151 1 368 265 138 21 chr9 104520515 104520704 -13341923 - L2 LINE L2 -875 2439 2229 535 170 236 0 chr9 104520707 104520813 -13341814 + AluYa5 SINE Alu 153 283 -28 297 0 0 0 chr9 104520813 104520846 -13341781 + (CA)n Simple_repeat Simple_repeat 2 34 0 781 344 49 5 chr9 104520852 104521259 -13341368 - L2 LINE L2 -1072 2242 1818 417 295 76 11 chr9 104521782 104521980 -13340647 + L1MEd LINE L1 1167 1462 -5172 248 210 12 49 chr9 104521980 104522061 -13340566 + L1MA10 LINE L1 6159 6236 -98 820 197 7 0 chr9 104522075 104522222 -13340405 + FRAM SINE Alu 13 160 -16 285 169 0 93 chr9 104522233 104522275 -13340352 + L1MEd LINE L1 3331 3375 -3269 2247 100 3 0 chr9 104522275 104522576 -13340051 - AluSp SINE Alu -11 302 1 285 169 0 93 chr9 104522576 104522651 -13339976 + L1MEd LINE L1 3375 3437 -3207 527 127 0 0 chr9 104522671 104522742 -13339885 + AluSp/q SINE Alu 223 293 -20 437 295 98 0 chr9 104522746 104522970 -13339657 + L1MEd LINE L1 3422 3667 -2977 2006 126 7 0 chr9 104522972 104523258 -13339369 + AluSq SINE Alu 1 288 -25 2347 77 3 0 chr9 104523282 104523582 -13339045 + AluSp SINE Alu 1 301 -12 1965 103 9 37 chr9 104523593 104523914 -13338713 + AluSx SINE Alu 1 312 0 2156 120 3 0 chr9 104524200 104524509 -13338118 + AluSx SINE Alu 2 311 -1 193 331 97 32 chr9 104524679 104524803 -13337824 - L2 LINE L2 -8 3305 3174 2115 115 3 0 chr9 104525122 104525417 -13337210 - AluSx SINE Alu -16 296 1 2188 106 3 3 chr9 104525753 104526064 -13336563 - AluSq SINE Alu 0 313 3 1697 91 0 0 chr9 104526633 104526853 -13335774 - AluSq SINE Alu -93 220 1 2232 81 0 0 chr9 104526855 104527140 -13335487 - AluSc SINE Alu -12 297 13 1771 104 0 0 chr9 104527140 104527381 -13335246 - AluSc SINE Alu -68 241 1 457 108 0 0 chr9 104527401 104527466 -13335161 + Alu SINE Alu 235 299 -13 254 173 0 39 chr9 104527487 104527506 -13335121 + AluSg/x SINE Alu 121 137 -165 299 79 0 0 chr9 104527506 104527544 -13335083 + Alu SINE Alu 3 40 -263 585 101 0 0 chr9 104529175 104529254 -13333373 + AluS SINE Alu 2 80 -232 226 271 159 35 chr9 104530194 104530364 -13332263 - MIR SINE MIR -59 203 13 635 197 8 0 chr9 104531172 104531289 -13331338 - FLAM_A SINE Alu -14 128 11 468 199 86 73 chr9 104531324 104531475 -13331152 + MLT1E3 LTR MaLR 62 214 -410 196 152 0 0 chr9 104531783 104531816 -13330811 + MIR SINE MIR 113 145 -63 932 148 133 0 chr9 104532841 104533037 -13329590 - AluJo SINE Alu -17 295 74 195 139 0 0 chr9 104534235 104534271 -13328356 + (TTCA)n Simple_repeat Simple_repeat 2 37 0 2298 69 3 53 chr9 104534501 104534820 -13327807 - AluSx SINE Alu -9 303 1 1561 157 68 10 chr9 104534830 104535124 -13327503 - AluJb SINE Alu -1 311 1 2232 100 29 19 chr9 104535132 104535441 -13327186 - AluSx SINE Alu 0 312 1 317 285 160 40 chr9 104535453 104535653 -13326974 + MIR SINE MIR 32 255 -7 2031 110 31 24 chr9 104536181 104536352 -13326275 - AluSx SINE Alu -12 300 125 2084 115 0 62 chr9 104536352 104536673 -13325954 - AluSg SINE Alu -9 301 1 2031 110 31 24 chr9 104536673 104536793 -13325834 - AluSx SINE Alu -187 125 7 2098 106 3 78 chr9 104536807 104537127 -13325500 - AluSq SINE Alu -17 296 1 1237 83 6 50 chr9 104537157 104537338 -13325289 + AluSp SINE Alu 137 309 -4 597 265 151 71 chr9 104537412 104537504 -13325123 + L2 LINE L2 2448 2531 -782 2383 93 3 10 chr9 104537504 104537817 -13324810 + AluSq SINE Alu 1 311 -2 2343 102 0 0 chr9 104537821 104538116 -13324511 + AluSg SINE Alu 1 295 -15 2307 125 0 0 chr9 104538118 104538430 -13324197 + AluSx SINE Alu 1 312 0 2266 96 14 0 chr9 104538440 104538733 -13323894 + AluSp SINE Alu 5 301 -12 597 265 151 71 chr9 104538733 104539138 -13323489 + L2 LINE L2 2541 3081 -232 2260 104 7 0 chr9 104539138 104539436 -13323191 - AluSx SINE Alu -12 300 1 597 265 151 71 chr9 104539436 104539601 -13323026 + L2 LINE L2 3081 3231 -82 2190 92 7 3 chr9 104539792 104540084 -13322543 - AluSq SINE Alu 0 313 21 262 305 11 11 chr9 104540745 104540840 -13321787 + L2 LINE L2 2992 3086 -186 202 160 53 40 chr9 104541204 104541279 -13321348 + (CCGAG)n Simple_repeat Simple_repeat 1 76 0 180 0 0 0 chr9 104541372 104541392 -13321235 + (CGG)n Simple_repeat Simple_repeat 2 21 0 202 264 14 56 chr9 104542713 104542785 -13319842 - MIR3 SINE MIR -11 197 129 297 323 98 6 chr9 104543510 104543674 -13318953 + MIR SINE MIR 78 256 -6 286 150 117 0 chr9 104543777 104543837 -13318790 + MER20 DNA MER1_type 54 120 -99 2466 54 0 10 chr9 104544308 104544603 -13318024 + AluY SINE Alu 1 292 -19 21 0 0 0 chr9 104546333 104546354 -13316273 + AT_rich Low_complexity Low_complexity 1 21 0 1563 146 84 19 chr9 104546412 104546673 -13315954 + AluJo SINE Alu 1 278 -34 295 78 39 0 chr9 104546676 104546727 -13315900 + CT-rich Low_complexity Low_complexity 1 53 0 1189 137 68 19 chr9 104548092 104548203 -13314424 + AluJo SINE Alu 23 127 -185 2363 71 3 3 chr9 104548203 104548498 -13314129 + AluSq SINE Alu 1 295 -18 1189 137 68 19 chr9 104548498 104548591 -13314036 + AluJo SINE Alu 127 237 -75 21 0 0 0 chr9 104549690 104549711 -13312916 + AT_rich Low_complexity Low_complexity 1 21 0 1211 121 18 0 chr9 104555104 104555269 -13307358 - AluSg/x SINE Alu -18 294 127 1765 168 6 31 chr9 104555271 104555451 -13307176 - AluSq SINE Alu 0 313 143 2303 102 0 3 chr9 104555451 104555746 -13306881 - AluSx SINE Alu -18 294 1 1765 168 6 31 chr9 104555746 104555886 -13306741 - AluSq SINE Alu -170 143 1 2312 106 0 0 chr9 104556015 104556308 -13306319 - AluSx SINE Alu -17 295 3 733 289 288 12 chr9 104556803 104556914 -13305713 - L2 LINE L2 0 3313 3234 2173 116 3 7 chr9 104556914 104557045 -13305582 + AluSg SINE Alu 1 131 -179 2471 42 21 10 chr9 104557045 104557334 -13305293 + AluSc SINE Alu 1 292 -17 2173 116 3 7 chr9 104557334 104557503 -13305124 + AluSg SINE Alu 131 300 -10 733 289 288 12 chr9 104557503 104558747 -13303880 - L2 LINE L2 -79 3234 1564 302 333 100 25 chr9 104558772 104559213 -13303414 - L2 LINE L2 -1906 1408 935 338 258 74 35 chr9 104559287 104559476 -13303151 + L1ME3A LINE L1 5963 6147 -23 562 14 0 14 chr9 104559478 104559547 -13303080 - U4 snRNA snRNA -77 68 1 258 116 0 0 chr9 104559600 104559643 -13302984 + (CA)n Simple_repeat Simple_repeat 2 44 0 2379 54 7 4 chr9 104560686 104560996 -13301631 - AluY SINE Alu 0 311 1 1369 186 0 4 chr9 104562870 104563096 -13299531 + AluJb SINE Alu 1 225 -87 714 203 7 0 chr9 104563373 104563521 -13299106 + L1M4 LINE L1 2436 2584 -3562 2291 120 0 0 chr9 104563633 104563942 -13298685 - AluSq SINE Alu -4 309 1 2184 123 0 0 chr9 104563970 104564254 -13298373 - AluSq SINE Alu -29 284 1 434 295 98 0 chr9 104564256 104564480 -13298147 - L1M4 LINE L1 -2977 3667 3422 497 127 0 0 chr9 104564484 104564555 -13298072 - AluSp/q SINE Alu -20 293 223 299 169 0 93 chr9 104564575 104564650 -13297977 - L1M4 LINE L1 -3207 3437 3375 2392 99 3 0 chr9 104564650 104564952 -13297675 + AluSp SINE Alu 1 303 -10 299 169 0 93 chr9 104564952 104564994 -13297633 - L1M4 LINE L1 -3269 3375 3331 811 197 7 0 chr9 104565005 104565152 -13297475 - FRAM SINE Alu -16 160 13 251 210 12 49 chr9 104565166 104565247 -13297380 - L1MA10 LINE L1 -98 6236 6159 398 295 76 11 chr9 104565247 104565445 -13297182 - L1M4 LINE L1 -5172 1462 1167 739 344 49 5 chr9 104565968 104566375 -13296252 + L2 LINE L2 1818 2242 -1072 297 0 0 0 chr9 104566381 104566414 -13296213 + (TG)n Simple_repeat Simple_repeat 2 34 0 496 170 236 0 chr9 104566414 104566520 -13296107 - AluYa5 SINE Alu -28 283 153 357 265 138 21 chr9 104566523 104566712 -13295915 + L2 LINE L2 2229 2439 -875 613 165 135 0 chr9 104566712 104566845 -13295782 + MER20 DNA MER1_type 1 151 -68 329 188 88 0 chr9 104568008 104568088 -13294539 + MER20 DNA MER1_type 133 219 0 917 278 152 36 chr9 104568088 104568166 -13294461 + L2 LINE L2 2432 2500 -813 2111 146 3 0 chr9 104568166 104568475 -13294152 + AluSx SINE Alu 1 310 -2 917 278 152 36 chr9 104568475 104568694 -13293933 + L2 LINE L2 2500 2692 -621 1757 177 35 0 chr9 104568694 104568977 -13293650 + AluJo SINE Alu 1 293 -19 917 278 152 36 chr9 104568977 104569369 -13293258 + L2 LINE L2 2692 3240 -73 2209 120 13 0 chr9 104569369 104569669 -13292958 - AluSx SINE Alu -2 310 7 917 278 152 36 chr9 104569669 104569753 -13292874 + L2 LINE L2 3240 3313 0 2095 153 0 0 chr9 104570948 104571243 -13291384 + AluJb SINE Alu 1 295 -17 506 352 94 0 chr9 104571850 104572083 -13290544 + MIR SINE MIR 2 256 -6 449 299 55 71 chr9 104572822 104573005 -13289622 - L1ME4a LINE L1 -248 5873 5689 2445 90 0 0 chr9 104573005 104573305 -13289322 - AluY SINE Alu -11 300 1 1700 78 0 32 chr9 104573307 104573470 -13289157 - AluSc SINE Alu -14 295 139 2302 101 0 7 chr9 104573470 104573766 -13288861 - AluSc SINE Alu -13 296 3 1700 78 0 32 chr9 104573766 104573819 -13288808 - AluSc SINE Alu -170 139 86 449 299 55 71 chr9 104573819 104573886 -13288741 - L1ME4a LINE L1 -433 5688 5624 275 248 74 50 chr9 104573905 104574026 -13288601 - L2 LINE L2 0 3272 3149 2408 67 0 3 chr9 104574140 104574445 -13288182 - AluY SINE Alu 0 304 1 2478 57 7 10 chr9 104574526 104574822 -13287805 - AluY SINE Alu -16 295 1 918 167 1 11 chr9 104575043 104575237 -13287390 + L1MB3 LINE L1 5569 5762 -404 1878 166 35 0 chr9 104575239 104575522 -13287105 + AluSx SINE Alu 1 293 -19 642 181 56 0 chr9 104575560 104575704 -13286923 + BC200 scRNA scRNA 10 161 -39 2024 134 8 30 chr9 104575715 104575802 -13286825 + L1MB3 LINE L1 5738 5825 -358 2258 81 3 78 chr9 104575802 104576136 -13286491 + AluSc SINE Alu 1 309 0 2024 134 8 30 chr9 104576136 104576413 -13286214 + L1MB3 LINE L1 5825 6094 -89 392 294 39 0 chr9 104576457 104576559 -13286068 + L1ME LINE L1 2982 3087 -3059 1800 158 0 73 chr9 104576566 104576693 -13285934 + AluSx SINE Alu 7 142 -189 2123 127 6 19 chr9 104576693 104577007 -13285620 + AluSg SINE Alu 1 310 0 1800 158 0 73 chr9 104577007 104577228 -13285399 + AluSx SINE Alu 142 331 0 1891 124 8 11 chr9 104577235 104577529 -13285098 + AluSx SINE Alu 23 312 0 635 308 87 45 chr9 104577532 104577879 -13284748 + L1ME LINE L1 4024 4355 -1766 1984 118 44 0 chr9 104577879 104578184 -13284443 + AluSx SINE Alu 4 320 0 2271 115 10 0 chr9 104578185 104578489 -13284138 + AluSx SINE Alu 1 307 -5 635 308 87 45 chr9 104578489 104578501 -13284126 + L1ME LINE L1 4355 4365 -1756 2404 91 0 7 chr9 104578501 104578799 -13283828 + AluSq SINE Alu 1 296 -17 635 308 87 45 chr9 104578799 104579923 -13282704 + L1ME LINE L1 4365 5578 -543 2167 122 3 10 chr9 104581061 104581356 -13281271 + AluSx SINE Alu 1 293 -19 2399 94 0 10 chr9 104581359 104581666 -13280961 + AluSg SINE Alu 1 304 -6 270 273 8 124 chr9 104581723 104581791 -13280836 + MER5A DNA MER1_type 68 118 -71 2310 113 0 13 chr9 104581791 104581965 -13280662 - AluSq SINE Alu -6 307 137 2220 94 20 7 chr9 104581965 104582263 -13280364 - AluSc SINE Alu -7 302 1 2310 113 0 13 chr9 104582263 104582399 -13280228 - AluSq SINE Alu -176 137 1 270 273 8 124 chr9 104582399 104582451 -13280176 + MER5A DNA MER1_type 118 174 -15 616 309 17 30 chr9 104582496 104582663 -13279964 - MIR SINE MIR -4 258 93 1842 150 38 47 chr9 104582663 104583003 -13279624 + MER1B DNA MER1_type 1 337 0 616 309 17 30 chr9 104583003 104583065 -13279562 - MIR SINE MIR -169 93 32 2348 98 0 0 chr9 104584579 104584876 -13277751 - AluY SINE Alu -14 297 1 1949 135 82 25 chr9 104584968 104585323 -13277304 - THE1C LTR MaLR 0 375 1 205 369 50 11 chr9 104585955 104586134 -13276493 - L2 LINE L2 -791 2523 2338 2445 68 3 13 chr9 104586250 104586560 -13276067 + AluY SINE Alu 1 307 -4 430 177 104 10 chr9 104586577 104586673 -13275954 + L1M4 LINE L1 4705 4809 -1337 305 276 138 37 chr9 104586716 104586852 -13275775 - MIR SINE MIR -68 140 5 559 263 53 43 chr9 104587197 104587406 -13275221 + MIR SINE MIR 33 243 -19 711 233 8 0 chr9 104587603 104587736 -13274891 + AluJo SINE Alu 2 135 -177 650 146 0 0 chr9 104587747 104587850 -13274777 + AluSp/q SINE Alu 211 313 0 2106 118 0 33 chr9 104587856 104588199 -13274428 + AluSg SINE Alu 1 310 0 318 246 196 50 chr9 104588387 104588626 -13274001 + L1 LINE L1 3224 3505 -2641 1784 161 19 26 chr9 104588626 104588936 -13273691 + AluJo SINE Alu 1 308 -4 318 246 196 50 chr9 104588936 104588956 -13273671 + L1 LINE L1 3505 3521 -2625 1251 152 26 43 chr9 104589396 104589626 -13273001 + AluJo SINE Alu 82 307 -5 275 310 103 0 chr9 104589647 104589831 -13272796 + L1ME3A LINE L1 5749 5951 -219 21 36 0 0 chr9 104590043 104590071 -13272556 + AT_rich Low_complexity Low_complexity 1 28 0 411 304 51 42 chr9 104590119 104590336 -13272291 + L2 LINE L2 2417 2635 -679 661 316 78 52 chr9 104590396 104590583 -13272044 + L2 LINE L2 2881 3062 -251 2403 79 3 0 chr9 104590583 104590875 -13271752 - AluSp SINE Alu -20 293 1 661 316 78 52 chr9 104590875 104591108 -13271519 + L2 LINE L2 3062 3312 -1 1864 133 32 0 chr9 104591226 104591504 -13271123 + AluSx SINE Alu 21 307 -5 2007 142 6 25 chr9 104591690 104592007 -13270620 + AluJb SINE Alu 1 311 -1 312 290 116 7 chr9 104592212 104592350 -13270277 + MIR SINE MIR 2 154 -108 361 278 65 12 chr9 104592451 104592622 -13270005 + MER20B DNA MER1_type 17 199 -20 872 128 7 34 chr9 104592652 104592847 -13269780 - AluSg/x SINE Alu 0 325 135 1298 210 100 15 chr9 104592851 104593122 -13269505 - AluJb SINE Alu -8 294 1 268 80 0 9 chr9 104593377 104593589 -13269038 + AluSg SINE Alu 1 302 0 2326 110 0 0 chr9 104594672 104594980 -13267647 + AluSx SINE Alu 4 311 -1 2098 149 7 0 chr9 104594994 104595303 -13267324 + AluJb SINE Alu 1 311 -1 929 179 0 71 chr9 104595329 104595513 -13267114 + FAM SINE Alu 1 171 -14 320 22 0 43 chr9 104595583 104595629 -13266998 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 21 89 0 0 chr9 104595655 104595711 -13266916 + AT_rich Low_complexity Low_complexity 1 56 0 930 120 7 28 chr9 104596018 104596160 -13266467 - FLAM_C SINE Alu -4 139 1 21 71 0 0 chr9 104596299 104596341 -13266286 + AT_rich Low_complexity Low_complexity 1 42 0 745 186 39 16 chr9 104596378 104596507 -13266120 - FLAM_C SINE Alu -1 132 1 1994 147 0 0 chr9 104596587 104596879 -13265748 - AluSx SINE Alu -20 292 1 1925 144 0 26 chr9 104597078 104597390 -13265237 + AluJb SINE Alu 9 312 0 2372 70 0 3 chr9 104597536 104597821 -13264806 + AluY SINE Alu 16 299 -12 1557 196 18 11 chr9 104598159 104598445 -13264182 + AluJb SINE Alu 2 289 -23 720 267 52 43 chr9 104598915 104599263 -13263364 - LTR33 LTR ERVL -170 351 1 200 195 0 0 chr9 104601365 104601406 -13261221 + A-rich Low_complexity Low_complexity 1 41 0 489 245 138 16 chr9 104602611 104602810 -13259817 + MIR SINE MIR 43 262 0 301 261 0 15 chr9 104603085 104603150 -13259477 + MIR SINE MIR 29 92 -170 857 295 12 4 chr9 104605134 104605378 -13257249 + MIR SINE MIR 17 262 0 2318 169 11 0 chr9 104605381 104605742 -13256885 - MLT1A1 LTR MaLR 0 365 1 206 191 71 0 chr9 104605798 104605840 -13256787 - L2 LINE L2 -35 3237 3193 451 305 176 0 chr9 104605889 104605938 -13256689 - MIR SINE MIR -15 247 208 3682 139 23 23 chr9 104605938 104606137 -13256490 + MER68 LTR ERV1 4 202 -360 243 0 0 0 chr9 104606137 104606164 -13256463 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 1927 139 22 0 chr9 104606164 104606438 -13256189 - AluSx SINE Alu -32 280 1 3682 139 23 23 chr9 104606438 104606796 -13255831 + MER68 LTR ERV1 200 562 0 451 305 176 0 chr9 104606796 104606956 -13255671 - MIR SINE MIR -54 208 1 472 308 24 110 chr9 104606956 104607488 -13255139 - L2 LINE L2 -100 3172 2687 1941 155 0 3 chr9 104607488 104607784 -13254843 + AluJb SINE Alu 1 295 -17 1855 148 108 0 chr9 104607865 104608189 -13254438 - MER46B DNA MER2_type -1 235 2 1224 147 15 25 chr9 104608258 104608462 -13254165 + AluJb SINE Alu 21 222 -90 304 320 168 25 chr9 104608510 104608754 -13253873 - L2 LINE L2 -787 2527 2249 292 229 59 129 chr9 104609090 104609178 -13253449 + L1ME3A LINE L1 5732 5825 -345 1535 172 20 54 chr9 104609178 104609474 -13253153 - AluJo SINE Alu -26 286 1 292 229 59 129 chr9 104609474 104609624 -13253003 + L1ME3A LINE L1 5825 5951 -219 2181 123 0 3 chr9 104609896 104610205 -13252422 + AluSg SINE Alu 2 309 -1 1216 124 0 6 chr9 104610205 104610382 -13252245 + AluSc SINE Alu 132 307 -2 2114 131 3 3 chr9 104610524 104610836 -13251791 + AluSx SINE Alu 1 312 0 365 349 31 23 chr9 104611755 104611884 -13250743 - MIR3 SINE MIR -70 138 9 2474 90 3 0 chr9 104612274 104612585 -13250042 - AluSp SINE Alu -1 312 1 321 220 113 57 chr9 104613419 104613560 -13249067 - MIR3 SINE MIR -54 154 6 24 32 0 0 chr9 104614183 104614214 -13248413 + GC_rich Low_complexity Low_complexity 1 31 0 641 132 0 19 chr9 104614533 104614639 -13247988 + FLAM_A SINE Alu 13 116 -26 2119 98 21 0 chr9 104614717 104615003 -13247624 + AluSp SINE Alu 1 292 -21 1549 93 4 85 chr9 104617024 104617272 -13245355 - AluSg/x SINE Alu -14 298 71 21 81 0 14 chr9 104617976 104617997 -13244630 + AT_rich Low_complexity Low_complexity 1 21 -52 2393 75 7 0 chr9 104617997 104618290 -13244337 + AluSx SINE Alu 1 295 -17 21 81 0 14 chr9 104618290 104618342 -13244285 + AT_rich Low_complexity Low_complexity 21 73 0 203 220 37 46 chr9 104620318 104620427 -13242200 + (CATATA)n Simple_repeat Simple_repeat 2 109 0 334 238 203 30 chr9 104621243 104621376 -13241251 + MIR3 SINE MIR 13 166 -58 28 29 0 0 chr9 104621581 104621616 -13241011 + AT_rich Low_complexity Low_complexity 1 35 0 2109 118 20 0 chr9 104621800 104622097 -13240530 + AluSq SINE Alu 1 303 -10 403 290 67 84 chr9 104622145 104622185 -13240442 + L2 LINE L2 3022 3061 -252 1044 161 0 24 chr9 104622185 104622353 -13240274 - FRAM SINE Alu -2 164 1 403 290 67 84 chr9 104622353 104622609 -13240018 + L2 LINE L2 3061 3313 0 599 277 79 17 chr9 104622984 104623161 -13239466 - MIR3 SINE MIR -9 199 12 1956 151 0 35 chr9 104623490 104623809 -13238818 + AluJo SINE Alu 1 308 -4 2393 81 7 0 chr9 104623948 104624245 -13238382 + AluSq SINE Alu 1 299 -14 319 194 56 0 chr9 104625806 104625878 -13236749 + MER116 DNA Mariner 5 80 0 235 208 42 0 chr9 104625895 104625943 -13236684 - L2 LINE L2 -6 3266 3217 2022 97 4 0 chr9 104626070 104626329 -13236298 + AluSg SINE Alu 1 260 -50 850 54 9 18 chr9 104626329 104626435 -13236192 - AluSq/x SINE Alu -208 105 1 1427 153 130 8 chr9 104626734 104626995 -13235632 - AluJo SINE Alu -19 293 1 592 245 27 66 chr9 104626996 104627253 -13235374 + L1ME2 LINE L1 2534 2780 -3366 477 237 59 0 chr9 104627308 104627426 -13235201 - MIR SINE MIR -70 192 68 1365 175 7 41 chr9 104627434 104627725 -13234902 - L1MB8 LINE L1 0 6178 5898 2249 109 0 7 chr9 104627738 104628040 -13234587 + AluSx SINE Alu 1 300 -12 565 168 0 30 chr9 104628168 104628269 -13234358 + FLAM_A SINE Alu 31 128 -14 1327 106 0 6 chr9 104628303 104628483 -13234144 + AluSg/x SINE Alu 112 290 -22 204 163 23 0 chr9 104628489 104628532 -13234095 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 4870 232 100 39 chr9 104628538 104629073 -13233554 + L1ME2 LINE L1 3210 3711 -2435 2483 77 0 0 chr9 104629073 104629373 -13233254 - AluSp SINE Alu -13 300 1 4870 232 100 39 chr9 104629373 104629844 -13232783 + L1ME2 LINE L1 3711 4152 -1994 1773 168 3 13 chr9 104629844 104630147 -13232480 - AluJb SINE Alu -12 300 1 4870 232 100 39 chr9 104630147 104630223 -13232404 + L1ME2 LINE L1 4152 4222 -1924 2216 96 0 30 chr9 104630223 104630524 -13232103 - AluSg SINE Alu -18 292 1 4870 232 100 39 chr9 104630524 104630535 -13232092 + L1ME2 LINE L1 4222 4231 -1915 2153 116 0 13 chr9 104630535 104630837 -13231790 - AluSx SINE Alu -14 298 1 4870 232 100 39 chr9 104630837 104631479 -13231148 + L1ME2 LINE L1 4231 5066 -1080 2252 113 7 0 chr9 104631479 104631789 -13230838 + AluSx SINE Alu 1 312 0 4870 232 100 39 chr9 104631789 104631862 -13230765 + L1ME2 LINE L1 5066 5133 -1013 322 0 0 0 chr9 104631938 104631977 -13230650 - L1PA3 LINE L1 -184 5971 5933 1285 13 0 33 chr9 104631977 104632130 -13230497 + L1PA4 LINE L1 6008 6155 0 536 235 76 7 chr9 104632177 104632340 -13230287 + L1ME2 LINE L1 5437 5611 -555 363 136 0 0 chr9 104632348 104632407 -13230220 + (TA)n Simple_repeat Simple_repeat 1 59 0 4887 48 7 2 chr9 104632409 104632973 -13229654 - L1PA5 LINE L1 -16 6138 5572 239 250 0 83 chr9 104633002 104633086 -13229541 + L1ME2 LINE L1 5650 5726 -438 747 219 6 19 chr9 104633089 104633249 -13229378 - FRAM SINE Alu -18 158 1 1358 228 54 31 chr9 104633250 104633675 -13228952 + L1ME2 LINE L1 5715 6149 -15 1551 180 10 29 chr9 104633696 104634002 -13228625 + AluJo SINE Alu 5 304 -8 702 200 0 24 chr9 104634013 104634138 -13228489 + FLAM_A SINE Alu 8 129 -13 2359 116 0 0 chr9 104634223 104634534 -13228093 + AluSx SINE Alu 2 312 0 880 162 0 22 chr9 104634597 104634733 -13227894 - FLAM_C SINE Alu 0 133 1 2021 116 46 0 chr9 104634811 104635095 -13227532 + AluSq SINE Alu 1 297 -16 852 80 27 47 chr9 104635099 104635249 -13227378 + L1MA5A LINE L1 5977 6123 -174 437 173 99 0 chr9 104635249 104635330 -13227297 - AluSg/x SINE Alu -3 306 218 1193 106 0 6 chr9 104635753 104635913 -13226714 - AluSq SINE Alu -154 159 1 1192 273 46 36 chr9 104635989 104636198 -13226429 - L1ME3A LINE L1 -250 5920 5715 2169 119 0 0 chr9 104636198 104636491 -13226136 + AluSg SINE Alu 1 293 -17 1192 273 46 36 chr9 104636491 104636870 -13225757 - L1ME3A LINE L1 -455 5715 5326 1589 176 0 8 chr9 104637105 104637355 -13225272 + AluJo SINE Alu 1 248 -64 421 169 46 85 chr9 104637361 104637491 -13225136 + Tigger2 DNA MER2_type 29 153 -2565 416 288 23 30 chr9 104638888 104639020 -13223607 + MIR3 SINE MIR 38 168 -40 748 202 0 0 chr9 104639438 104639567 -13223060 + FLAM_A SINE Alu 1 129 -4 12017 114 80 58 chr9 104639710 104640005 -13222622 + Tigger2 DNA MER2_type 136 423 -2295 2193 27 4 0 chr9 104640005 104640267 -13222360 + L1PA5 LINE L1 5888 6150 -4 12017 114 80 58 chr9 104640267 104640815 -13221812 + Tigger2 DNA MER2_type 423 957 -1761 2050 118 0 4 chr9 104640815 104641095 -13221532 + AluSx SINE Alu 1 279 -33 12017 114 80 58 chr9 104641095 104642575 -13220052 + Tigger2 DNA MER2_type 957 2513 -205 730 214 42 12 chr9 104642576 104642744 -13219883 - FAM SINE Alu 0 175 3 345 66 0 187 chr9 104642773 104642821 -13219806 - Tigger2 DNA MER2_type -142 2576 2551 2302 107 7 0 chr9 104642821 104643129 -13219498 - AluSx SINE Alu -2 310 1 345 66 0 187 chr9 104643129 104643171 -13219456 - Tigger2 DNA MER2_type -167 2551 2503 379 130 0 0 chr9 104643184 104643238 -13219389 - AluSp/q SINE Alu -20 283 230 1116 109 0 0 chr9 104643338 104643509 -13219118 + AluSp SINE Alu 137 307 0 2141 122 0 7 chr9 104643572 104643876 -13218751 - AluSq SINE Alu -11 302 1 25 65 0 0 chr9 104643999 104644045 -13218582 + AT_rich Low_complexity Low_complexity 1 46 0 191 338 0 12 chr9 104645035 104645115 -13217512 + L2 LINE L2 2179 2257 -1057 333 139 0 14 chr9 104645256 104645328 -13217299 + Charlie5 DNA MER1_type 2471 2541 -71 366 288 130 11 chr9 104645388 104645572 -13217055 + L2 LINE L2 2319 2524 -790 1630 165 104 0 chr9 104645730 104646057 -13216570 - MER46B DNA MER2_type 0 236 1 991 121 0 0 chr9 104646177 104646309 -13216318 + AluSq/x SINE Alu 1 132 -181 1996 104 24 10 chr9 104646312 104646609 -13216018 + AluSg SINE Alu 1 301 -9 371 310 109 62 chr9 104646630 104646955 -13215672 + L2 LINE L2 2917 3260 -12 1829 143 0 15 chr9 104646955 104647228 -13215399 + AluJo SINE Alu 33 301 -11 371 310 109 62 chr9 104647228 104647241 -13215386 + L2 LINE L2 3260 3271 -1 929 189 18 0 chr9 104647563 104647727 -13214900 - MIR SINE MIR -90 172 6 246 265 120 62 chr9 104649518 104649639 -13212988 + L1 LINE L1 4392 4505 -1641 2064 127 21 0 chr9 104649639 104649930 -13212697 - AluSq SINE Alu -16 297 1 246 265 120 62 chr9 104649930 104650159 -13212468 + L1 LINE L1 4505 4719 -1427 1884 159 20 0 chr9 104650159 104650461 -13212166 + AluJb SINE Alu 1 308 -4 246 265 120 62 chr9 104650461 104650717 -13211910 + L1 LINE L1 4719 5034 -1112 180 0 0 0 chr9 104650844 104650864 -13211763 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 2359 88 0 0 chr9 104650866 104651161 -13211466 + AluSg SINE Alu 1 295 -15 604 252 0 8 chr9 104651167 104651294 -13211333 + FLAM_C SINE Alu 1 126 -7 267 228 351 0 chr9 104651334 104651448 -13211179 + L2 LINE L2 3143 3296 -17 30 27 0 0 chr9 104651865 104651902 -13210725 + AT_rich Low_complexity Low_complexity 1 37 0 552 152 4 10 chr9 104652127 104652377 -13210250 + AluJo SINE Alu 1 298 -14 22 0 0 0 chr9 104653059 104653081 -13209546 + AT_rich Low_complexity Low_complexity 1 22 0 2334 96 3 6 chr9 104654231 104654543 -13208084 - AluSp SINE Alu -2 311 1 206 121 0 0 chr9 104654692 104654725 -13207902 + (A)n Simple_repeat Simple_repeat 1 33 0 2260 116 0 0 chr9 104655653 104655947 -13206680 + AluSx SINE Alu 1 294 -18 2241 113 0 0 chr9 104656086 104656377 -13206250 - AluSx SINE Alu -10 302 12 414 0 0 0 chr9 104656494 104656540 -13206087 + (TA)n Simple_repeat Simple_repeat 2 47 0 2391 91 3 0 chr9 104656540 104656847 -13205780 - AluSp SINE Alu -5 308 1 2153 98 4 0 chr9 104657115 104657390 -13205237 - AluSx SINE Alu -36 276 1 603 344 42 20 chr9 104657571 104657929 -13204698 + L1MEd LINE L1 358 723 -5396 558 117 0 210 chr9 104657995 104658157 -13204470 + FLAM_C SINE Alu 3 130 -3 252 0 0 0 chr9 104658240 104658268 -13204359 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 2351 50 0 0 chr9 104658268 104658550 -13204077 - AluY SINE Alu -29 282 1 1960 142 35 0 chr9 104658551 104658840 -13203787 - AluSx SINE Alu -13 299 1 330 106 0 0 chr9 104658845 104658892 -13203735 - AluJb SINE Alu -171 131 85 529 294 46 30 chr9 104658909 104659476 -13203151 + L1MEd LINE L1 922 1497 -4813 25 0 0 0 chr9 104659557 104659582 -13203045 + AT_rich Low_complexity Low_complexity 1 25 0 241 239 0 0 chr9 104659600 104659667 -13202960 + L1MEd LINE L1 2931 2997 -3132 1758 159 3 32 chr9 104659670 104659984 -13202643 - AluSx SINE Alu -7 305 1 1533 174 10 27 chr9 104660013 104660311 -13202316 + AluSx SINE Alu 5 297 -15 1000 97 15 0 chr9 104660318 104660452 -13202175 + AluY SINE Alu 1 136 -175 42415 35 2 1 chr9 104660452 104666620 -13196007 + L1PA3 LINE L1 6 6155 0 1216 110 0 6 chr9 104666628 104666830 -13195797 + AluSg/x SINE Alu 121 321 0 510 267 239 6 chr9 104666939 104667295 -13195332 + L1M4 LINE L1 4733 5171 -975 201 283 17 50 chr9 104667296 104667356 -13195271 + L2 LINE L2 3241 3298 -15 385 197 33 0 chr9 104667389 104667511 -13195116 + L1M4 LINE L1 5174 5299 -847 503 235 63 45 chr9 104667514 104667735 -13194892 - L1ME LINE L1 -536 5634 5410 2163 128 7 7 chr9 104668130 104668435 -13194192 + AluSx SINE Alu 1 305 -7 2056 132 0 3 chr9 104668511 104668799 -13193828 - AluSx SINE Alu -25 287 1 275 311 100 13 chr9 104668799 104669098 -13193529 - L1ME4a LINE L1 -38 6083 5759 800 183 0 0 chr9 104669921 104670047 -13192580 + FLAM_C SINE Alu 1 126 -17 2051 150 3 0 chr9 104670195 104670502 -13192125 + AluJb SINE Alu 1 308 -4 333 339 48 92 chr9 104671357 104671649 -13190978 - L2 LINE L2 0 3272 2994 777 209 7 40 chr9 104671669 104671946 -13190681 - L1MEc LINE L1 -4099 2297 2030 22 0 0 0 chr9 104672102 104672124 -13190503 + AT_rich Low_complexity Low_complexity 1 22 0 608 160 10 0 chr9 104672179 104672279 -13190348 - FLAM_A SINE Alu -12 130 30 440 291 150 47 chr9 104672300 104672835 -13189792 - L1M4 LINE L1 -3302 3080 2445 1680 178 7 21 chr9 104672835 104673121 -13189506 - AluJo SINE Alu -30 282 1 440 291 150 47 chr9 104673121 104673296 -13189331 - L1M4 LINE L1 -3937 2445 2290 641 153 84 0 chr9 104673710 104673841 -13188786 - L1MEc LINE L1 -5975 230 89 691 203 72 72 chr9 104673962 104674169 -13188458 - MER58C DNA MER1_type -7 208 2 2331 74 3 7 chr9 104674681 104674978 -13187649 - AluSc SINE Alu -13 296 1 2246 103 0 28 chr9 104676492 104676811 -13185816 + AluSx SINE Alu 1 310 -2 21 0 0 0 chr9 104677322 104677343 -13185284 + AT_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chr9 104677474 104677514 -13185113 + AT_rich Low_complexity Low_complexity 1 40 0 180 0 0 0 chr9 104677902 104677922 -13184705 + (TTTTC)n Simple_repeat Simple_repeat 2 21 0 2157 93 31 10 chr9 104677928 104678218 -13184409 - AluSq SINE Alu -17 296 1 2171 138 0 0 chr9 104679204 104679502 -13183125 - AluSx SINE Alu -14 298 1 1926 166 0 6 chr9 104679513 104679826 -13182801 - AluJb SINE Alu -1 311 1 302 235 335 15 chr9 104680285 104680485 -13182142 + L2 LINE L2 1998 2261 -1053 458 264 98 40 chr9 104680663 104680939 -13181688 + MLT1I LTR MaLR 91 382 -27 2150 84 42 3 chr9 104681669 104681953 -13180674 - AluY SINE Alu -16 295 1 305 170 98 27 chr9 104682218 104682330 -13180297 - L1MC5 LINE L1 -36 7925 7806 252 0 0 0 chr9 104682575 104682603 -13180024 + (TA)n Simple_repeat Simple_repeat 2 29 0 2409 86 3 0 chr9 104682603 104682907 -13179720 - AluSx SINE Alu -7 305 1 2378 80 0 10 chr9 104683032 104683332 -13179295 - AluSx SINE Alu -15 297 1 621 158 0 0 chr9 104683530 104683625 -13179002 + FLAM_A SINE Alu 33 127 -15 288 0 0 0 chr9 104683879 104683911 -13178716 + (CAA)n Simple_repeat Simple_repeat 2 33 0 751 175 41 6 chr9 104684014 104684185 -13178442 + L1MB7 LINE L1 6008 6184 0 614 268 88 20 chr9 104684379 104684765 -13177862 - LTR33 LTR ERVL -5 516 4 1655 169 3 50 chr9 104684872 104685191 -13177436 + AluJb SINE Alu 1 304 -8 1823 179 3 6 chr9 104685490 104685803 -13176824 + AluJo SINE Alu 1 312 0 500 299 116 13 chr9 104685900 104686124 -13176503 + MIR SINE MIR 16 262 0 942 136 0 7 chr9 104686194 104686334 -13176293 + AluJ SINE Alu 1 139 -173 603 118 0 0 chr9 104686334 104686419 -13176208 + MER41A LTR ERV1 384 468 -86 898 175 54 0 chr9 104686424 104686590 -13176037 + AluJ SINE Alu 131 305 -7 298 242 88 0 chr9 104686628 104686719 -13175908 + MIR SINE MIR 164 262 0 395 300 44 53 chr9 104686781 104687008 -13175619 + HAL1 LINE L1 2250 2474 -33 870 226 113 79 chr9 104687257 104687404 -13175223 + AluSp SINE Alu 2 143 -160 2257 100 0 10 chr9 104687404 104687705 -13174922 + AluSq SINE Alu 1 298 -15 870 226 113 79 chr9 104687705 104687849 -13174778 + AluSp SINE Alu 143 303 0 2271 107 0 3 chr9 104688049 104688349 -13174278 + AluSq SINE Alu 1 299 -14 1727 140 54 4 chr9 104688397 104688675 -13173952 + AluJb SINE Alu 7 298 -14 2301 103 3 7 chr9 104689522 104689832 -13172795 + AluSc SINE Alu 1 309 0 637 278 18 6 chr9 104689917 104690086 -13172541 - MLT1H LTR MaLR -2 547 377 1936 139 0 26 chr9 104690489 104690799 -13171828 + AluJb SINE Alu 1 302 -10 279 313 122 33 chr9 104690806 104691037 -13171590 - L1MC4a LINE L1 -1826 5982 5703 2056 107 7 31 chr9 104691037 104691350 -13171277 - AluSx SINE Alu 0 306 1 279 313 122 33 chr9 104691350 104691485 -13171142 - L1MC4a LINE L1 -2105 5703 5582 198 303 52 71 chr9 104692804 104692959 -13169668 + L2 LINE L2 1860 2011 -1303 2128 121 3 3 chr9 104693293 104693590 -13169037 + AluSx SINE Alu 1 297 -15 600 260 0 8 chr9 104693596 104693723 -13168904 + FLAM_C SINE Alu 1 126 -7 216 333 114 0 chr9 104694412 104694526 -13168101 - MIR SINE MIR -125 137 11 2231 110 16 7 chr9 104694602 104694910 -13167717 - AluSx SINE Alu -1 311 1 1315 150 23 108 chr9 104695197 104695503 -13167124 - AluJo SINE Alu -7 305 26 5332 194 48 41 chr9 104695503 104696944 -13165683 + MER52A LTR ERV1 1 1755 0 1149 151 0 0 chr9 104696949 104697108 -13165519 - AluSx SINE Alu -153 159 1 1259 164 36 13 chr9 104697153 104697378 -13165249 - AluJo SINE Alu -82 230 1 191 254 113 14 chr9 104697514 104697585 -13165042 + MIR SINE MIR 117 194 -68 2008 70 0 4 chr9 104697660 104697916 -13164711 + L1P5 LINE L1 5505 5759 -392 246 147 0 59 chr9 104697917 104697985 -13164642 - LTR66 LTR ERVL -153 457 394 226 130 0 0 chr9 104697991 104698037 -13164590 - L1MC4 LINE L1 -1339 6703 6658 2477 99 39 8 chr9 104698173 104698537 -13164090 + L1PB1 LINE L1 5777 6151 0 26 74 0 0 chr9 104698693 104698747 -13163880 + AT_rich Low_complexity Low_complexity 1 54 0 2170 163 23 45 chr9 104698892 104699290 -13163337 + MLT1B LTR MaLR 2 390 0 1265 148 78 0 chr9 104699522 104699793 -13162834 + MER33 DNA MER1_type 27 318 -6 2186 137 3 0 chr9 104699797 104700103 -13162524 - AluSq SINE Alu -6 307 1 271 111 19 19 chr9 104700346 104700400 -13162227 + (GAA)n Simple_repeat Simple_repeat 1 54 0 237 98 0 0 chr9 104700540 104700581 -13162046 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 2336 73 7 0 chr9 104700583 104700870 -13161757 - AluSp SINE Alu -24 289 1 22 0 0 0 chr9 104701002 104701024 -13161603 + AT_rich Low_complexity Low_complexity 1 22 0 501 258 93 13 chr9 104701689 104701840 -13160787 + L1ME3A LINE L1 6008 6170 0 1620 189 13 13 chr9 104702392 104702693 -13159934 - AluJo SINE Alu -9 303 3 2321 85 0 0 chr9 104702843 104703148 -13159479 - AluSx SINE Alu 0 305 1 1095 108 11 22 chr9 104703324 104703509 -13159118 + L1MA4 LINE L1 6118 6300 0 3769 187 55 30 chr9 104703582 104703612 -13159015 + L1MB7 LINE L1 4968 4996 -1188 1808 108 87 25 chr9 104703612 104703898 -13158729 + AluSx SINE Alu 1 304 -8 3769 187 55 30 chr9 104703898 104704122 -13158505 + L1MB7 LINE L1 4996 5213 -971 1965 77 3 150 chr9 104704122 104704475 -13158152 + AluSq SINE Alu 9 309 -4 3769 187 55 30 chr9 104704475 104704902 -13157725 + L1MB7 LINE L1 5213 5628 -556 2008 125 4 0 chr9 104704902 104705174 -13157453 + AluSq SINE Alu 25 297 -16 3769 187 55 30 chr9 104705174 104705662 -13156965 + L1MB7 LINE L1 5628 6173 -11 1981 154 0 0 chr9 104705801 104706100 -13156527 - AluJb SINE Alu -13 299 1 265 262 164 0 chr9 104706221 104706343 -13156284 + L2 LINE L2 3167 3308 -5 406 309 119 5 chr9 104706610 104706811 -13155816 - L2 LINE L2 -2 3311 3088 2295 101 3 0 chr9 104708009 104708317 -13154310 + AluSx SINE Alu 1 309 -3 183 316 0 0 chr9 104708382 104708439 -13154188 - L2 LINE L2 0 3313 3257 255 125 0 0 chr9 104708713 104708753 -13153874 + (CA)n Simple_repeat Simple_repeat 1 40 0 239 154 46 15 chr9 104709185 104709250 -13153377 + L1MCa LINE L1 1379 1445 -5095 1699 172 0 26 chr9 104709637 104709939 -13152688 + AluJo SINE Alu 1 294 -18 1290 211 234 72 chr9 104709953 104710057 -13152570 + L1MC4 LINE L1 6459 6545 -1497 1978 132 3 7 chr9 104710057 104710352 -13152275 + AluSx SINE Alu 1 294 -18 1290 211 234 72 chr9 104710352 104711274 -13151353 + L1MC4 LINE L1 6545 7770 -272 608 170 14 92 chr9 104711957 104712098 -13150529 + MER33 DNA MER1_type 4 133 -191 2715 84 29 0 chr9 104712332 104712677 -13149950 + THE1A LTR MaLR 1 355 0 2403 75 0 0 chr9 104712841 104713134 -13149493 + AluY SINE Alu 1 293 -18 1572 182 13 16 chr9 104713303 104713616 -13149011 + AluJo SINE Alu 1 312 0 348 262 124 41 chr9 104713621 104713766 -13148861 + L1MCa LINE L1 1944 2100 -4440 21 36 0 0 chr9 104713900 104713928 -13148699 + AT_rich Low_complexity Low_complexity 1 28 0 1907 142 7 7 chr9 104713956 104714251 -13148376 - AluJb SINE Alu -17 295 1 28 0 0 0 chr9 104714258 104714286 -13148341 + AT_rich Low_complexity Low_complexity 1 28 0 1865 86 0 25 chr9 104714294 104714537 -13148090 + AluSg SINE Alu 1 237 -73 243 0 0 0 chr9 104714538 104714565 -13148062 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2303 97 3 0 chr9 104714565 104714864 -13147763 + AluSg SINE Alu 1 300 -10 1629 149 120 0 chr9 104714953 104715229 -13147398 + AluSx SINE Alu 1 309 -3 3356 259 92 72 chr9 104715230 104715573 -13147054 + L1MCa LINE L1 2503 2838 -3702 2305 112 3 0 chr9 104715573 104715878 -13146749 - AluSq SINE Alu -7 306 1 3356 259 92 72 chr9 104715878 104716393 -13146234 + L1MCa LINE L1 2838 3341 -3199 2297 113 0 0 chr9 104716393 104716693 -13145934 + AluSx SINE Alu 5 304 -8 3356 259 92 72 chr9 104716693 104718065 -13144562 + L1MCa LINE L1 3341 4732 -1808 2845 108 18 86 chr9 104718071 104718258 -13144369 + Tigger3(Golem) DNA MER2_type 2556 2754 -275 2310 65 7 0 chr9 104718258 104718578 -13144049 - AluY SINE Alu 0 322 1 2845 108 18 86 chr9 104718578 104718898 -13143729 + Tigger3(Golem) DNA MER2_type 2754 3029 0 1868 170 11 102 chr9 104719029 104719499 -13143128 + MLT1C LTR MaLR 5 431 -36 293 203 0 0 chr9 104719503 104719562 -13143065 - L1ME LINE L1 -720 5442 5384 225 129 0 0 chr9 104719562 104719593 -13143034 + MLT1C LTR MaLR 437 467 0 1915 158 10 0 chr9 104720044 104720348 -13142279 + AluJo SINE Alu 1 307 -5 743 217 0 0 chr9 104720367 104720487 -13142140 + AluSq/x SINE Alu 2 121 -192 36 0 0 0 chr9 104720492 104720528 -13142099 + AT_rich Low_complexity Low_complexity 1 36 0 2173 115 0 13 chr9 104720759 104721072 -13141555 + AluSx SINE Alu 1 309 -3 2451 61 0 3 chr9 104721148 104721443 -13141184 - AluY SINE Alu -17 294 1 2301 95 7 0 chr9 104721443 104721747 -13140880 - AluSq SINE Alu -7 306 1 200 157 20 39 chr9 104721828 104721879 -13140748 + MIR SINE MIR 128 177 -85 1687 183 3 3 chr9 104722015 104722299 -13140328 + AluSx SINE Alu 22 305 -7 875 172 6 37 chr9 104722299 104722462 -13140165 + AluJo/FRAM SINE Alu 137 294 -18 439 254 127 22 chr9 104722471 104722652 -13139975 - L1ME LINE L1 -511 5720 5521 1579 247 77 0 chr9 104722665 104723030 -13139597 - MER119 DNA MER1_type -186 397 5 186 40 0 0 chr9 104723085 104723092 -13139535 + (A)n Simple_repeat Simple_repeat 1 7 -18 2313 85 3 0 chr9 104723092 104723387 -13139240 - AluSp SINE Alu -17 296 1 186 40 0 0 chr9 104723387 104723404 -13139223 + (A)n Simple_repeat Simple_repeat 6 25 0 4595 162 62 22 chr9 104723514 104724410 -13138217 - L1MC3 LINE L1 -166 7619 6688 435 250 0 35 chr9 104724412 104724528 -13138099 - L1ME LINE L1 -731 5508 5397 524 211 21 0 chr9 104724531 104724626 -13138001 + MER58B DNA MER1_type 244 340 -1 2526 225 86 48 chr9 104724659 104725391 -13137236 - L1ME LINE L1 -5505 891 123 1706 112 4 13 chr9 104725391 104725623 -13137004 + MER30 DNA MER1_type 1 230 0 2526 225 86 48 chr9 104725623 104725717 -13136910 - L1ME LINE L1 -6273 123 34 925 177 30 63 chr9 104725738 104725975 -13136652 - L1M4 LINE L1 -2200 3946 3718 744 187 60 0 chr9 104726104 104726254 -13136373 - MSTB LTR MaLR -51 375 217 1847 128 215 8 chr9 104726254 104726607 -13136020 - MSTA LTR MaLR -2 426 1 646 215 8 25 chr9 104726620 104726741 -13135886 - AluJo SINE Alu -92 220 102 229 316 11 0 chr9 104726754 104726849 -13135778 - L1M4 LINE L1 -2648 3498 3403 2128 115 0 3 chr9 104727080 104727367 -13135260 + AluSx SINE Alu 1 286 -26 381 75 0 0 chr9 104727367 104727420 -13135207 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 207 0 0 0 chr9 104727683 104727706 -13134921 + (TTA)n Simple_repeat Simple_repeat 2 24 0 10067 40 4 128 chr9 104727713 104729270 -13133357 - SVA Other Other -20 1366 3 1608 191 7 14 chr9 104729290 104729584 -13133043 - AluJo SINE Alu -20 292 1 2400 87 0 0 chr9 104729630 104729939 -13132688 - AluSc SINE Alu 0 309 1 1547 154 87 47 chr9 104730053 104730351 -13132276 + AluJb SINE Alu 1 310 -2 297 0 0 0 chr9 104730912 104730945 -13131682 + (TA)n Simple_repeat Simple_repeat 1 33 0 2369 92 0 3 chr9 104730945 104731251 -13131376 - AluSc SINE Alu -4 305 1 192 346 62 0 chr9 104731490 104731571 -13131056 - MIR3 SINE MIR -5 203 118 494 50 0 0 chr9 104731576 104731636 -13130991 - U2 snRNA snRNA -128 60 1 436 115 0 0 chr9 104731753 104731814 -13130813 - AluJb SINE Alu -11 301 241 813 118 0 25 chr9 104731815 104731934 -13130693 - AluJb SINE Alu -112 200 85 1249 145 0 0 chr9 104732091 104732277 -13130350 - AluSg1 SINE Alu -11 299 114 819 132 16 0 chr9 104732324 104732445 -13130182 - AluSg1 SINE Alu -186 123 1 22 0 0 0 chr9 104732445 104732467 -13130160 + AT_rich Low_complexity Low_complexity 1 22 0 344 323 75 8 chr9 104733088 104733221 -13129406 + L3b LINE CR1 1431 1572 -11 293 314 150 23 chr9 104733374 104733594 -13129033 + MIR SINE MIR 15 262 0 201 303 136 63 chr9 104733785 104734170 -13128457 - L2 LINE L2 -1213 2101 1746 2217 105 0 0 chr9 104734170 104734464 -13128163 + AluSx SINE Alu 1 294 -18 201 303 136 63 chr9 104734464 104734777 -13127850 - L2 LINE L2 -1568 1746 1352 1010 198 55 0 chr9 104734865 104735067 -13127560 + MER20 DNA MER1_type 1 213 -6 217 289 0 0 chr9 104735334 104735379 -13127248 + L2 LINE L2 3191 3235 -37 2107 267 71 55 chr9 104735388 104735987 -13126640 + L2 LINE L2 2234 2892 -421 766 198 0 0 chr9 104735987 104736124 -13126503 - FLAM_A SINE Alu 0 137 1 2107 267 71 55 chr9 104736124 104736553 -13126074 + L2 LINE L2 2892 3313 0 667 284 68 0 chr9 104736551 104736787 -13125840 + MIR SINE MIR 11 262 0 * 2328 143 29 5 chr9 104736952 104737337 -13125290 + L1MB3 LINE L1 5577 5970 -213 1713 145 28 18 chr9 104737505 104737787 -13124840 + AluSx SINE Alu 20 304 -8 1912 155 0 7 chr9 104738712 104738996 -13123631 + AluJo SINE Alu 2 283 -29 254 241 48 0 chr9 104739023 104739106 -13123521 - L1MC4 LINE L1 -1339 6703 6617 40 37 0 0 chr9 104739456 104739510 -13123117 + AT_rich Low_complexity Low_complexity 1 54 0 2236 122 0 10 chr9 104739606 104739917 -13122710 - AluSx SINE Alu -4 308 1 432 314 72 38 chr9 104740344 104740634 -13121993 - LTR16C LTR ERVL 0 491 192 2061 96 117 27 chr9 104740651 104740985 -13121642 + THE1B LTR MaLR 1 364 0 317 250 198 0 chr9 104741127 104741243 -13121384 - MLT1J LTR MaLR -40 471 333 1033 253 79 46 chr9 104741253 104741581 -13121046 - MLT1J LTR MaLR -152 359 21 1227 266 150 8 chr9 104741666 104742060 -13120567 - LTR16A LTR ERVL 0 450 1 25 75 0 0 chr9 104742076 104742129 -13120498 + AT_rich Low_complexity Low_complexity 1 53 0 244 291 134 16 chr9 104742135 104742262 -13120365 - L2 LINE L2 -1 3312 3171 1742 179 0 0 chr9 104742266 104742557 -13120070 + AluJb SINE Alu 1 291 -21 983 258 27 52 chr9 104742566 104742987 -13119640 - L2 LINE L2 -230 3083 2662 3393 243 60 45 chr9 104742987 104743204 -13119423 - L2 LINE L2 -872 2442 2230 2345 91 0 3 chr9 104743204 104743500 -13119127 + AluSc SINE Alu 1 295 -14 3393 243 60 45 chr9 104743500 104743694 -13118933 - L2 LINE L2 -1084 2230 2040 2335 108 0 0 chr9 104743694 104743989 -13118638 - AluSx SINE Alu -17 295 1 3393 243 60 45 chr9 104743989 104744594 -13118033 - L2 LINE L2 -1274 2040 1446 1665 138 101 0 chr9 104744594 104744747 -13117880 - AluSx SINE Alu -8 304 168 189 0 0 0 chr9 104744747 104744768 -13117859 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1665 138 101 0 chr9 104744768 104744890 -13117737 - AluSx SINE Alu -144 168 1 2457 49 0 64 chr9 104744898 104745225 -13117402 - AluY SINE Alu -5 306 1 3393 243 60 45 chr9 104745225 104745496 -13117131 - L2 LINE L2 -1874 1440 1124 422 306 19 25 chr9 104745654 104745814 -13116813 - LTR67 LTR ERVL 0 557 399 2428 72 3 0 chr9 104745926 104746218 -13116409 - AluY SINE Alu -18 293 1 488 163 0 0 chr9 104746283 104746363 -13116264 + AluJ/FLAM SINE Alu 2 81 -231 369 288 98 8 chr9 104746363 104746495 -13116132 - L2 LINE L2 -629 2685 2542 204 164 0 82 chr9 104746548 104746743 -13115884 + CT-rich Low_complexity Low_complexity 2 180 0 788 158 7 43 chr9 104747216 104747355 -13115272 + FRAM SINE Alu 30 163 -13 525 255 161 0 chr9 104747405 104747554 -13115073 - MER5A DNA MER1_type -8 181 9 1123 191 14 5 chr9 104748017 104748227 -13114400 + MER20 DNA MER1_type 7 218 -1 25 0 0 0 chr9 104748251 104748276 -13114351 + AT_rich Low_complexity Low_complexity 1 25 0 1608 177 7 21 chr9 104748279 104748423 -13114204 + AluJo SINE Alu 3 148 -159 2068 143 141 5 chr9 104748423 104748800 -13113827 - MSTA LTR MaLR 0 428 1 1608 177 7 21 chr9 104748800 104748964 -13113663 + AluJo SINE Alu 148 307 0 601 171 87 114 chr9 104748998 104749297 -13113330 - L1MC5 LINE L1 -36 7925 7635 301 136 0 0 chr9 104749975 104750019 -13112608 - MER94 DNA DNA 0 134 91 857 236 39 44 chr9 104750099 104750328 -13112299 - MIR SINE MIR -21 241 14 184 226 19 19 chr9 104750704 104750757 -13111870 + L2 LINE L2 3205 3257 -15 993 187 235 0 chr9 104751284 104751514 -13111113 - AluSg SINE Alu -16 284 1 2091 129 0 3 chr9 104751552 104751847 -13110780 - AluSx SINE Alu -15 297 4 270 200 0 18 chr9 104752386 104752441 -13110186 - MER91 DNA MER1_type -2 194 141 2621 52 0 0 chr9 104752585 104752892 -13109735 + AluY SINE Alu 1 307 -4 755 251 157 32 chr9 104752987 104753357 -13109270 + L2 LINE L2 2897 3312 -1 1890 115 67 62 chr9 104753368 104753511 -13109116 - THE1B LTR MaLR -3 361 220 2316 115 0 0 chr9 104753511 104753815 -13108812 - AluSx SINE Alu -8 304 1 1890 115 67 62 chr9 104753815 104754028 -13108599 - THE1B LTR MaLR -144 220 3 11725 88 17 8 chr9 104754028 104755182 -13107445 - THE1B-int LTR MaLR 0 1580 406 1725 179 20 7 chr9 104755182 104755479 -13107148 + AluSx SINE Alu 1 301 -11 11725 88 17 8 chr9 104755479 104755889 -13106738 - THE1B-int LTR MaLR -1174 406 1 2212 119 51 23 chr9 104755889 104756243 -13106384 - THE1B LTR MaLR 0 364 1 252 276 9 43 chr9 104756353 104756469 -13106158 - MIR SINE MIR -77 185 74 258 275 168 0 chr9 104756768 104756899 -13105728 + MIR SINE MIR 74 226 -36 226 252 140 50 chr9 104757757 104757979 -13104648 + HAL1 LINE L1 2147 2388 -119 1668 183 40 10 chr9 104758121 104758422 -13104205 - AluJo SINE Alu -2 310 1 2174 124 0 3 chr9 104758520 104758811 -13103816 - AluSq SINE Alu -23 290 1 1556 219 106 17 chr9 104758897 104759036 -13103591 + L1M4 LINE L1 5187 5312 -866 2074 123 0 3 chr9 104759036 104759345 -13103282 + AluSx SINE Alu 1 308 0 1556 219 106 17 chr9 104759345 104759746 -13102881 + L1M4 LINE L1 5312 5804 -374 234 156 22 0 chr9 104759917 104759962 -13102665 - Alu SINE Alu -19 147 102 923 174 10 85 chr9 104759968 104760055 -13102572 - AluJo SINE Alu -126 186 94 2150 92 20 23 chr9 104760055 104760358 -13102269 + AluSx SINE Alu 2 303 -9 923 174 10 85 chr9 104760358 104760471 -13102156 - AluJo SINE Alu -218 94 1 189 147 0 0 chr9 104760478 104760512 -13102115 + (TTTC)n Simple_repeat Simple_repeat 3 36 0 2071 125 0 14 chr9 104760530 104760839 -13101788 - AluSx SINE Alu 0 305 1 1819 129 58 24 chr9 104761058 104761191 -13101436 + AluSx SINE Alu 1 128 -184 2300 97 7 0 chr9 104761191 104761491 -13101136 + AluSq SINE Alu 1 302 -11 1819 129 58 24 chr9 104761491 104761651 -13100976 + AluSx SINE Alu 128 304 -8 2105 118 30 0 chr9 104762037 104762333 -13100294 - AluSq SINE Alu -8 305 1 21 0 0 0 chr9 104762335 104762356 -13100271 + AT_rich Low_complexity Low_complexity 1 21 0 314 130 0 0 chr9 104762511 104762557 -13100070 + AluSx SINE Alu 14 59 -242 1782 127 0 0 chr9 104763076 104763321 -13099306 + AluSx SINE Alu 64 308 -4 2182 114 0 13 chr9 104763331 104763630 -13098997 + AluSg SINE Alu 3 297 -13 2286 95 0 3 chr9 104763633 104763928 -13098699 + AluSx SINE Alu 1 294 -18 2333 92 7 0 chr9 104764263 104764566 -13098061 - AluSg SINE Alu -5 305 1 2067 107 41 3 chr9 104764683 104764974 -13097653 - AluSq SINE Alu -11 302 1 2070 142 0 3 chr9 104765056 104765365 -13097262 - AluSx SINE Alu -4 308 1 680 206 0 57 chr9 104765432 104765573 -13097054 - FLAM_A SINE Alu 0 133 1 2391 67 0 27 chr9 104765585 104765882 -13096745 - AluY SINE Alu -21 290 2 205 132 19 19 chr9 104766055 104766108 -13096519 + T-rich Low_complexity Low_complexity 1 53 0 241 121 0 0 chr9 104766115 104766148 -13096479 - Alu SINE Alu -205 95 63 4490 158 31 32 chr9 104766182 104766449 -13096178 + L1MB3 LINE L1 5337 5603 -580 2947 6 0 0 chr9 104766449 104766760 -13095867 + AluY SINE Alu 1 311 0 4490 158 31 32 chr9 104766760 104767338 -13095289 + L1MB3 LINE L1 5603 6181 -2 2278 75 7 0 chr9 104767555 104767834 -13094793 + AluSc SINE Alu 16 296 -13 1359 205 16 50 chr9 104768455 104768658 -13093969 - AluJo SINE Alu -19 293 102 2117 134 39 31 chr9 104768658 104769016 -13093611 - THE1B LTR MaLR -3 361 1 1359 205 16 50 chr9 104769016 104769115 -13093512 - AluJo SINE Alu -210 102 1 2041 143 3 0 chr9 104769165 104769465 -13093162 + AluSx SINE Alu 1 301 -11 242 260 52 0 chr9 104769783 104769860 -13092767 - MIR SINE MIR -54 208 128 2335 92 7 0 chr9 104769941 104770245 -13092382 + AluSq SINE Alu 1 306 -7 2520 60 0 3 chr9 104770245 104770545 -13092082 + AluY SINE Alu 1 299 -12 3107 192 13 4 chr9 104770813 104771370 -13091257 + MER68 LTR ERV1 1 562 0 344 306 38 0 chr9 104771650 104771807 -13090820 - L1 LINE L1 -1807 4339 4177 1596 200 17 0 chr9 104772132 104772422 -13090205 - AluJo SINE Alu -17 295 1 2239 112 0 26 chr9 104772867 104773180 -13089447 + AluSx SINE Alu 1 305 -7 1711 159 23 36 chr9 104773354 104773656 -13088971 + AluJo SINE Alu 1 298 -14 345 262 68 0 chr9 104773710 104773813 -13088814 - L2 LINE L2 -9 3304 3195 2388 85 7 3 chr9 104773823 104774130 -13088497 - AluSx SINE Alu -4 308 1 211 211 0 0 chr9 104774185 104774237 -13088390 - L2 LINE L2 -135 3178 3127 696 270 83 8 chr9 104774245 104774486 -13088141 + MIR SINE MIR 3 261 -1 1779 280 132 15 chr9 104774499 104775423 -13087204 - L2 LINE L2 -208 3105 2067 783 278 41 88 chr9 104775838 104776063 -13086564 + L1MEd LINE L1 563 797 -5460 2343 86 17 0 chr9 104776063 104776364 -13086263 + AluSp SINE Alu 1 306 -7 783 278 41 88 chr9 104776364 104776489 -13086138 + L1MEd LINE L1 797 926 -5331 2402 86 0 0 chr9 104776489 104776790 -13085837 + AluY SINE Alu 3 303 -8 783 278 41 88 chr9 104776790 104777252 -13085375 + L1MEd LINE L1 926 1387 -4870 2219 90 32 0 chr9 104777520 104777797 -13084830 - AluSg SINE Alu -22 288 3 25 0 0 0 chr9 104777802 104777827 -13084800 + AT_rich Low_complexity Low_complexity 1 25 0 2181 112 0 3 chr9 104778157 104778468 -13084159 + AluSx SINE Alu 1 310 0 320 94 19 0 chr9 104778513 104778566 -13084061 + (CA)n Simple_repeat Simple_repeat 2 55 0 1178 258 89 68 chr9 104778588 104779335 -13083292 + HAL1 LINE L1 611 1382 -1125 2136 112 0 7 chr9 104779335 104779630 -13082997 + AluSg SINE Alu 1 293 -17 1178 258 89 68 chr9 104779630 104779776 -13082851 + HAL1 LINE L1 1382 1523 -984 1927 123 60 7 chr9 104779794 104780079 -13082548 + AluSg SINE Alu 1 300 -10 1813 155 4 0 chr9 104780081 104780345 -13082282 + AluSx SINE Alu 3 267 -45 2272 116 3 0 chr9 104780370 104780672 -13081955 + AluSp SINE Alu 1 303 -10 2128 117 0 0 chr9 104780684 104780988 -13081639 + AluSx SINE Alu 1 304 0 392 236 81 35 chr9 104780994 104781168 -13081459 + HAL1 LINE L1 2166 2347 -160 221 324 59 29 chr9 104781333 104781503 -13081124 + MER5B DNA MER1_type 2 176 -2 2489 88 3 0 chr9 104781548 104781856 -13080771 + AluSx SINE Alu 1 309 -3 2379 104 0 0 chr9 104782034 104782341 -13080286 + AluSg SINE Alu 1 307 -3 1601 179 7 10 chr9 104782405 104782695 -13079932 - AluJo SINE Alu -23 289 1 2257 121 0 6 chr9 104782849 104783163 -13079464 - AluSx SINE Alu 0 312 1 2212 113 7 3 chr9 104783784 104784086 -13078541 + AluSp SINE Alu 1 303 -10 2354 97 3 3 chr9 104784513 104784812 -13077815 - AluSp SINE Alu -14 299 1 195 100 0 0 chr9 104785306 104785336 -13077291 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 1710 180 0 20 chr9 104785969 104786269 -13076358 - AluJb SINE Alu -18 294 1 644 183 44 1 chr9 104786541 104786683 -13075944 - L1MA4A LINE L1 -1 6302 6151 886 177 62 100 chr9 104786720 104786777 -13075850 - L1MA9 LINE L1 -154 6158 6100 1765 194 0 3 chr9 104786777 104787081 -13075546 - AluJo SINE Alu -9 303 1 886 177 62 100 chr9 104787081 104787100 -13075527 - L1MA9 LINE L1 -212 6100 6082 2287 107 3 3 chr9 104787100 104787408 -13075219 - AluSx SINE Alu -4 308 1 886 177 62 100 chr9 104787408 104787590 -13075037 - L1MA9 LINE L1 -230 6082 5909 1709 169 67 26 chr9 104787594 104787937 -13074690 + MER46B DNA MER2_type 1 232 -4 2358 110 0 0 chr9 104788074 104788384 -13074243 + AluSx SINE Alu 3 312 0 880 162 0 22 chr9 104788447 104788583 -13074044 - FLAM_C SINE Alu 0 133 1 2017 116 46 0 chr9 104788661 104788945 -13073682 + AluSq SINE Alu 1 297 -16 797 93 27 47 chr9 104788949 104789099 -13073528 + L1MA5A LINE L1 5977 6123 -174 249 33 0 0 chr9 104789762 104789792 -13072835 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2150 64 0 19 chr9 104790802 104791069 -13071558 - AluSq SINE Alu -47 266 5 934 133 7 7 chr9 104791264 104791407 -13071220 - AluJo SINE Alu -82 230 88 342 61 0 0 chr9 104791776 104791825 -13070802 + (CA)n Simple_repeat Simple_repeat 2 50 0 229 307 23 11 chr9 104793036 104793124 -13069503 + GA-rich Low_complexity Low_complexity 3 91 0 1806 104 0 8 chr9 104794531 104794771 -13067856 - AluSx SINE Alu -71 241 4 318 177 16 0 chr9 104794771 104794833 -13067794 - L1MC5 LINE L1 -804 7157 7095 2030 145 0 10 chr9 104794840 104795150 -13067477 - AluSp SINE Alu -6 307 1 2455 74 0 0 chr9 104795162 104795459 -13067168 - AluY SINE Alu -14 297 1 983 97 8 8 chr9 104795459 104795593 -13067034 - AluSq/x SINE Alu -178 134 1 258 163 0 0 chr9 104795753 104795796 -13066831 - Alu SINE Alu -259 43 1 2579 56 3 0 chr9 104795814 104796117 -13066510 + AluY SINE Alu 1 304 -7 524 292 113 0 chr9 104796127 104796384 -13066243 + L1ME3A LINE L1 5666 5951 -219 2051 98 37 20 chr9 104796636 104796932 -13065695 + AluSx SINE Alu 1 301 -11 334 248 139 47 chr9 104796993 104797122 -13065505 - L2 LINE L2 -2 3311 3171 24 85 0 0 chr9 104797249 104797308 -13065319 + AT_rich Low_complexity Low_complexity 1 59 0 24 53 0 0 chr9 104797569 104797607 -13065020 + AT_rich Low_complexity Low_complexity 1 38 0 2325 99 0 0 chr9 104798119 104798413 -13064214 + AluSx SINE Alu 13 306 -6 326 281 34 0 chr9 104798600 104798689 -13063938 + MIR SINE MIR 59 150 -112 1364 192 18 14 chr9 104798940 104799262 -13063365 + AluJo SINE Alu 2 308 0 3045 87 7 12 chr9 104799289 104799714 -13062913 - L1PA8 LINE L1 -35 6137 5715 728 171 0 49 chr9 104799748 104799871 -13062756 + FLAM_C SINE Alu 2 118 -25 214 211 244 22 chr9 104799932 104800022 -13062605 - MIR SINE MIR -71 191 82 28 0 0 0 chr9 104800160 104800188 -13062439 + AT_rich Low_complexity Low_complexity 1 28 0 2106 250 82 30 chr9 104800358 104800921 -13061706 - MLT1G1 LTR MaLR -3 592 1 2306 103 0 0 chr9 104801134 104801435 -13061192 + AluSx SINE Alu 1 301 -11 1125 144 0 44 chr9 104801443 104801624 -13061003 + AluSg/x SINE Alu 127 299 -11 186 256 47 0 chr9 104801711 104801754 -13060873 - L3 LINE CR1 -18 1559 1515 2202 119 0 13 chr9 104802292 104802604 -13060023 + AluSx SINE Alu 1 308 -4 2362 105 0 0 chr9 104803032 104803337 -13059290 + AluSg SINE Alu 1 305 -5 1655 182 0 7 chr9 104803352 104803643 -13058984 + AluJb SINE Alu 7 295 -17 1764 175 0 3 chr9 104803806 104804097 -13058530 + AluSx SINE Alu 4 293 -19 2202 72 11 0 chr9 104804218 104804527 -13058100 + AluY SINE Alu 1 312 0 2368 190 14 81 chr9 104804934 104805491 -13057136 - MLT2B1 LTR ERVL 0 520 1 2116 116 0 0 chr9 104805672 104805957 -13056670 + AluSx SINE Alu 11 295 -17 2103 129 10 0 chr9 104805974 104806277 -13056350 + AluSg SINE Alu 1 306 -4 1740 127 4 12 chr9 104806314 104806573 -13056054 + AluSx SINE Alu 44 300 -12 381 43 0 0 chr9 104806627 104806674 -13055953 + (CA)n Simple_repeat Simple_repeat 2 48 0 639 187 17 126 chr9 104806833 104807063 -13055564 - MLT1F1 LTR MaLR -150 417 213 279 0 0 0 chr9 104807116 104807147 -13055480 + (TG)n Simple_repeat Simple_repeat 1 31 0 807 219 34 60 chr9 104807250 104807273 -13055354 - MLT1F1 LTR MaLR -340 227 205 237 98 0 0 chr9 104807273 104807314 -13055313 + (TG)n Simple_repeat Simple_repeat 1 41 0 807 219 34 60 chr9 104807314 104807523 -13055104 - MLT1F1 LTR MaLR -362 205 1 718 186 73 0 chr9 104808129 104808253 -13054374 - FLAM_C SINE Alu 0 133 1 466 178 10 20 chr9 104808461 104808562 -13054065 + AluSq/x SINE Alu 11 110 -203 1619 122 13 0 chr9 104808741 104808971 -13053656 - AluJb SINE Alu -14 298 66 2317 105 0 0 chr9 104809078 104809383 -13053244 - AluSg SINE Alu -4 306 2 2128 104 35 0 chr9 104809395 104809684 -13052943 - AluSx SINE Alu -13 299 1 362 276 41 10 chr9 104809997 104810095 -13052532 - L2 LINE L2 0 3313 3213 2267 104 0 3 chr9 104810231 104810529 -13052098 - AluSx SINE Alu -15 297 1 530 259 104 16 chr9 104810792 104810873 -13051754 - MIR SINE MIR -5 257 185 2409 91 0 10 chr9 104810873 104811050 -13051577 - AluSp SINE Alu -3 310 136 2274 86 7 0 chr9 104811050 104811341 -13051286 - AluY SINE Alu -18 293 1 2409 91 0 10 chr9 104811341 104811471 -13051156 - AluSp SINE Alu -177 136 6 530 259 104 16 chr9 104811471 104811582 -13051045 - MIR SINE MIR -77 185 48 1527 201 31 14 chr9 104811758 104812084 -13050543 + AluJb SINE Alu 1 312 0 1516 148 47 65 chr9 104812499 104812572 -13050055 - Charlie5 DNA MER1_type -14 2610 2537 1694 161 58 3 chr9 104812572 104812864 -13049763 + AluJb SINE Alu 1 308 -4 2087 124 3 0 chr9 104812873 104813163 -13049464 + AluSq SINE Alu 1 291 -22 1516 148 47 65 chr9 104813163 104813199 -13049428 - Charlie5 DNA MER1_type -95 2529 2494 1667 179 0 17 chr9 104813199 104813500 -13049127 + AluJb SINE Alu 1 296 -16 1516 148 47 65 chr9 104813500 104813763 -13048864 - Charlie5 DNA MER1_type -130 2494 2234 525 194 83 0 chr9 104813770 104813878 -13048749 - Charlie5 DNA MER1_type -2495 117 1 1014 250 44 8 chr9 104814312 104814564 -13048063 + MIR SINE MIR 2 262 0 901 159 6 57 chr9 104814564 104814740 -13047887 - AluJ SINE Alu -26 286 120 279 45 0 0 chr9 104814743 104814787 -13047840 - L1MA3 LINE L1 0 6305 6262 913 137 0 0 chr9 104814788 104814919 -13047708 - AluJ SINE Alu -171 141 11 374 264 209 40 chr9 104815674 104816118 -13046509 + L1M2 LINE L1 445 963 -5886 281 194 181 0 chr9 104818245 104818317 -13044310 + MIR SINE MIR 51 135 -73 850 164 8 15 chr9 104818375 104818509 -13044118 + FLAM_C SINE Alu 1 133 0 227 271 85 0 chr9 104818613 104818672 -13043955 - MIR SINE MIR -190 72 9 29 28 0 0 chr9 104822145 104822181 -13040446 + AT_rich Low_complexity Low_complexity 1 36 0 216 0 0 0 chr9 104823049 104823073 -13039554 + (TG)n Simple_repeat Simple_repeat 2 25 0 2324 85 3 3 chr9 104825176 104825470 -13037157 + AluSq SINE Alu 1 294 -19 2348 97 0 10 chr9 104825618 104825927 -13036700 + AluSx SINE Alu 1 306 -6 1828 174 84 3 chr9 104826800 104827122 -13035505 - MER7A DNA MER2_type 0 346 1 1686 158 10 53 chr9 104827526 104827829 -13034798 - AluJo SINE Alu -18 294 5 2452 59 0 10 chr9 104828249 104828553 -13034074 + AluY SINE Alu 1 301 -10 24 32 0 0 chr9 104828814 104828845 -13033782 + AT_rich Low_complexity Low_complexity 1 31 0 2150 100 14 3 chr9 104828911 104829200 -13033427 - AluSc SINE Alu -17 292 1 297 51 0 0 chr9 104829369 104829408 -13033219 + (TC)n Simple_repeat Simple_repeat 1 39 0 2077 84 16 52 chr9 104829444 104829610 -13033017 - AluSx SINE Alu -15 297 145 1307 63 0 0 chr9 104829610 104829768 -13032859 - L1PA5 LINE L1 -2 6152 5995 2077 84 16 52 chr9 104829768 104829909 -13032718 - AluSx SINE Alu -167 145 1 315 173 77 48 chr9 104829997 104830101 -13032526 + L1ME LINE L1 5712 5818 -303 186 103 0 0 chr9 104830169 104830198 -13032429 + (CA)n Simple_repeat Simple_repeat 2 30 0 297 212 161 102 chr9 104830247 104830313 -13032314 - MER5A DNA MER1_type -56 133 72 2197 122 0 0 chr9 104830313 104830617 -13032010 - AluSc SINE Alu -5 304 1 297 212 161 102 chr9 104830617 104830668 -13031959 - MER5A DNA MER1_type -117 72 9 2248 101 7 13 chr9 104831284 104831591 -13031036 - AluSg SINE Alu -4 306 2 2363 75 3 44 chr9 104831656 104831977 -13030650 - AluSp SINE Alu -5 308 1 24 22 0 43 chr9 104831980 104832003 -13030624 + AT_rich Low_complexity Low_complexity 1 23 -21 1000 138 0 0 chr9 104832003 104832133 -13030494 - FLAM_A SINE Alu -2 131 2 24 22 0 43 chr9 104832133 104832155 -13030472 + AT_rich Low_complexity Low_complexity 23 44 0 2213 78 10 39 chr9 104832359 104832666 -13029961 + AluSc SINE Alu 1 298 -11 2296 98 78 29 chr9 104833000 104833347 -13029280 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr9 104834044 104834065 -13028562 + AT_rich Low_complexity Low_complexity 1 21 0 1651 192 31 0 chr9 104834072 104834359 -13028268 - AluJo SINE Alu -12 300 5 623 14 0 0 chr9 104834787 104834861 -13027766 - AluY SINE Alu -235 74 1 609 181 81 12 chr9 104834912 104835072 -13027555 - Charlie1 DNA MER1_type 0 2761 2591 1114 132 0 6 chr9 104835077 104835236 -13027391 + AluSp SINE Alu 137 294 -19 1660 168 41 52 chr9 104835238 104835615 -13027012 - Charlie1 DNA MER1_type -163 2598 2224 2055 156 0 0 chr9 104835615 104835922 -13026705 - AluSx SINE Alu -5 307 1 695 225 0 7 chr9 104835960 104836098 -13026529 - Charlie1 DNA MER1_type -1183 1578 1442 2299 92 7 0 chr9 104836429 104836724 -13025903 - AluSq SINE Alu -16 297 1 2281 104 3 0 chr9 104836726 104837024 -13025603 - AluSg SINE Alu -9 301 3 239 270 125 46 chr9 104837116 104837268 -13025359 + MIR SINE MIR 49 212 -50 2337 88 0 7 chr9 104838206 104838503 -13024124 - AluSg SINE Alu -14 296 2 250 240 77 58 chr9 104839356 104839460 -13023167 - MER4-int LTR ERV1 -5382 1216 1111 216 0 0 0 chr9 104839460 104839484 -13023143 + (TA)n Simple_repeat Simple_repeat 2 25 0 2207 109 0 0 chr9 104839518 104839821 -13022806 - AluSx SINE Alu -9 303 1 2577 154 93 107 chr9 104839862 104840181 -13022446 + L1MD2 LINE L1 5601 5923 -436 1786 143 37 3 chr9 104840181 104840475 -13022152 - AluSx SINE Alu -8 304 1 2577 154 93 107 chr9 104840475 104840680 -13021947 + L1MD2 LINE L1 5923 6115 -244 486 46 0 0 chr9 104840680 104840745 -13021882 + (CA)n Simple_repeat Simple_repeat 2 66 0 2577 154 93 107 chr9 104840745 104840899 -13021728 + L1MD2 LINE L1 6115 6270 -89 1784 146 9 19 chr9 104840962 104841098 -13021529 + AluSx SINE Alu 1 137 -175 2050 100 27 7 chr9 104841098 104841397 -13021230 + AluSg SINE Alu 1 305 -5 1784 146 9 19 chr9 104841397 104841575 -13021052 + AluSx SINE Alu 137 312 0 2094 111 7 0 chr9 104841584 104841881 -13020746 - AluSc SINE Alu -10 299 1 423 301 124 16 chr9 104842252 104842438 -13020189 - L2 LINE L2 -411 2903 2698 1748 108 0 0 chr9 104842445 104842686 -13019941 + AluSx SINE Alu 1 241 -71 2306 93 0 0 chr9 104842742 104843044 -13019583 - AluSx SINE Alu -4 308 7 529 241 124 24 chr9 104843055 104843176 -13019451 + L1ME1 LINE L1 5888 5995 -1435 2194 84 0 0 chr9 104843176 104843485 -13019142 - AluSx SINE Alu 0 309 1 529 241 124 24 chr9 104843485 104843781 -13018846 + L1ME1 LINE L1 5995 7429 -1 1424 129 140 30 chr9 104843805 104844069 -13018558 - AluSc SINE Alu -16 293 1 448 215 67 20 chr9 104844070 104844219 -13018408 + L1MC5 LINE L1 7417 7572 -389 645 167 0 83 chr9 104844233 104844377 -13018250 - FLAM_C SINE Alu 0 133 2 22 0 0 0 chr9 104844387 104844409 -13018218 + AT_rich Low_complexity Low_complexity 1 22 0 2116 94 7 10 chr9 104844412 104844719 -13017908 + AluSx SINE Alu 3 308 -4 2082 142 0 0 chr9 104845387 104845697 -13016930 - AluSg SINE Alu 0 310 1 352 329 80 40 chr9 104845742 104845967 -13016660 + L2 LINE L2 2185 2418 -896 2122 102 7 0 chr9 104845977 104846272 -13016355 + AluSg SINE Alu 6 302 -8 941 160 67 40 chr9 104846312 104846392 -13016235 + L1ME LINE L1 5177 5253 -911 1799 139 17 3 chr9 104846392 104846687 -13015940 + AluSq SINE Alu 1 299 -14 941 160 67 40 chr9 104846687 104846911 -13015716 + L1ME LINE L1 5253 5471 -693 496 252 0 0 chr9 104846914 104847025 -13015602 + L1MA10 LINE L1 6223 6333 -1 186 226 0 113 chr9 104847072 104847100 -13015527 - MIR SINE MIR -190 72 53 1015 191 91 0 chr9 104847100 104847299 -13015328 - MER20 DNA MER1_type 0 219 3 186 226 0 113 chr9 104847299 104847332 -13015295 - MIR SINE MIR -209 53 18 180 0 0 0 chr9 104847765 104847785 -13014842 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2200 91 3 0 chr9 104847960 104848258 -13014369 - AluSp SINE Alu -14 299 1 1786 146 0 3 chr9 104848652 104848939 -13013688 + AluSx SINE Alu 1 286 -26 2153 104 13 0 chr9 104848970 104849278 -13013349 + AluSp SINE Alu 1 312 -1 928 89 0 0 chr9 104849607 104849730 -13012897 - AluSg/x SINE Alu -15 295 173 2239 86 0 0 chr9 104849772 104850064 -13012563 + AluSx SINE Alu 2 293 -19 1842 100 4 4 chr9 104850075 104850335 -13012292 + AluSp SINE Alu 14 273 -40 1609 167 7 14 chr9 104850823 104851105 -13011522 + AluJo SINE Alu 1 280 -32 22 56 0 0 chr9 104851119 104851155 -13011472 + AT_rich Low_complexity Low_complexity 1 36 0 2255 89 0 10 chr9 104851294 104851608 -13011019 - AluSx SINE Alu -1 311 1 1654 129 44 34 chr9 104851639 104851933 -13010694 - AluSx SINE Alu -11 301 5 2429 44 0 0 chr9 104852465 104852758 -13009869 + AluY SINE Alu 1 293 -18 2098 75 10 30 chr9 104852866 104853210 -13009417 + AluSx SINE Alu 1 312 0 21 0 0 0 chr9 104853954 104853975 -13008652 + GC_rich Low_complexity Low_complexity 1 21 0 264 170 0 0 chr9 104854103 104854156 -13008471 + (CGG)n Simple_repeat Simple_repeat 3 55 0 312 176 235 12 chr9 104854837 104854922 -13007705 + L2 LINE L2 3185 3288 -25 370 282 10 10 chr9 104854925 104855028 -13007599 - L2 LINE L2 -1 3312 3210 1086 126 11 0 chr9 104855036 104855210 -13007417 + AluSg/x SINE Alu 116 291 -21 235 262 131 0 chr9 104855214 104855298 -13007329 - L2 LINE L2 -612 2702 2608 224 37 0 0 chr9 104855302 104855329 -13007298 + L2 LINE L2 3276 3302 -11 360 204 20 41 chr9 104855375 104855473 -13007154 + L1MC4 LINE L1 7946 8041 -1 351 276 98 8 chr9 104855526 104855562 -13007065 - L2 LINE L2 -1 3312 3281 1518 115 146 8 chr9 104855562 104855822 -13006805 + AluSx SINE Alu 1 296 -16 351 276 98 8 chr9 104855822 104855908 -13006719 - L2 LINE L2 -32 3281 3179 482 65 0 78 chr9 104855925 104856002 -13006625 - MER21A LTR ERV1 -351 580 510 528 206 69 46 chr9 104856007 104856025 -13006602 - AluJo SINE Alu -177 135 119 1518 168 97 0 chr9 104856025 104856293 -13006334 + AluSx SINE Alu 1 294 -8 528 206 69 46 chr9 104856293 104856405 -13006222 - AluJo SINE Alu -193 119 2 760 205 37 6 chr9 104856504 104856665 -13005962 + FRAM SINE Alu 1 166 0 2075 123 0 22 chr9 104856713 104857030 -13005597 + AluSg SINE Alu 1 310 0 1250 89 6 0 chr9 104857031 104857200 -13005427 + AluSg/x SINE Alu 121 290 -22 574 205 23 183 chr9 104857252 104857478 -13005149 + MIR SINE MIR 32 212 -50 1594 175 10 32 chr9 104857478 104857792 -13004835 + AluJb SINE Alu 1 307 -5 574 205 23 183 chr9 104857792 104857828 -13004799 + MIR SINE MIR 212 252 -10 2127 106 7 0 chr9 104857905 104858206 -13004421 + AluSx SINE Alu 1 303 -9 2017 142 0 0 chr9 104858241 104858544 -13004083 + AluJb SINE Alu 1 303 -9 1792 99 58 31 chr9 104858656 104858950 -13003677 + AluSc SINE Alu 1 302 -7 2361 66 0 3 chr9 104859285 104859587 -13003040 + AluY SINE Alu 1 301 -10 229 69 0 0 chr9 104860155 104860184 -13002443 + LTR6A LTR ERV1 73 101 -463 2037 121 0 40 chr9 104860289 104860612 -13002015 - AluSx SINE Alu -2 310 1 248 211 156 44 chr9 104861063 104861153 -13001474 + MIR SINE MIR 42 141 -67 552 152 0 0 chr9 104861164 104861243 -13001384 + AluSx SINE Alu 2 80 -233 986 178 13 26 chr9 104861352 104861583 -13001044 + AluSx SINE Alu 83 310 0 2008 124 7 0 chr9 104861592 104861890 -13000737 - AluSg SINE Alu -10 300 1 1808 155 0 7 chr9 104862602 104862899 -12999728 + AluSx SINE Alu 1 295 -17 2051 110 13 7 chr9 104862901 104863209 -12999418 + AluSx SINE Alu 1 310 -2 2422 42 0 16 chr9 104863331 104863640 -12998987 + AluY SINE Alu 1 304 -7 362 269 0 21 chr9 104863757 104863850 -12998777 - L2 LINE L2 -2 3311 3221 225 191 95 16 chr9 104863852 104863915 -12998712 + LTR11 LTR ERV 424 491 -193 1199 312 78 35 chr9 104863921 104864348 -12998279 - L2 LINE L2 -160 3153 2681 1918 141 0 3 chr9 104864348 104864653 -12997974 + AluJb SINE Alu 1 304 -8 1199 312 78 35 chr9 104864653 104864973 -12997654 - L2 LINE L2 -632 2681 2376 5893 109 53 56 chr9 104864997 104865067 -12997560 - L1MC1 LINE L1 -4 6329 6260 2256 73 7 3 chr9 104865067 104865368 -12997259 + AluY SINE Alu 1 302 -9 5893 109 53 56 chr9 104865368 104865390 -12997237 - L1MC1 LINE L1 -73 6260 6239 706 150 0 57 chr9 104865390 104865530 -12997097 + FLAM_C SINE Alu 2 133 0 5893 109 53 56 chr9 104865530 104866481 -12996146 - L1MC1 LINE L1 -94 6239 5291 234 229 0 0 chr9 104866779 104866827 -12995800 + L1P3 LINE L1 5529 5576 -596 787 211 14 46 chr9 104866846 104866907 -12995720 - L1M4 LINE L1 -814 5332 5271 2098 105 3 3 chr9 104866907 104867203 -12995424 + AluSp SINE Alu 1 296 -17 787 211 14 46 chr9 104867203 104867359 -12995268 - L1M4 LINE L1 -875 5271 5122 27 0 0 0 chr9 104867414 104867441 -12995186 + AT_rich Low_complexity Low_complexity 1 27 0 295 304 49 0 chr9 104867514 104867616 -12995011 + L2 LINE L2 2911 3017 -296 2153 129 3 0 chr9 104867617 104867928 -12994699 - AluSx SINE Alu 0 312 1 870 149 40 35 chr9 104867938 104868139 -12994488 - L1MB7 LINE L1 0 6184 5983 22 0 0 0 chr9 104868297 104868319 -12994308 + AT_rich Low_complexity Low_complexity 1 22 0 2129 102 7 0 chr9 104868399 104868694 -12993933 - AluSq SINE Alu -16 297 1 5147 87 82 4 chr9 104869309 104870054 -12992573 - L1PA8 LINE L1 0 6172 5370 621 226 0 0 chr9 104870335 104870450 -12992177 + FLAM_C SINE Alu 2 116 -27 192 163 0 0 chr9 104870450 104870493 -12992134 + (CTAA)n Simple_repeat Simple_repeat 3 45 0 880 168 89 65 chr9 104870631 104870845 -12991782 - MER20 DNA MER1_type 0 219 1 231 256 0 64 chr9 104870952 104871030 -12991597 + L2 LINE L2 2298 2370 -944 256 367 129 36 chr9 104871594 104871951 -12990676 + L2 LINE L2 2871 3260 -12 1363 203 16 41 chr9 104871951 104872081 -12990546 + AluJo SINE Alu 1 133 -179 2107 107 0 7 chr9 104872081 104872372 -12990255 + AluSc SINE Alu 2 290 -19 1363 203 16 41 chr9 104872372 104872561 -12990066 + AluJo SINE Alu 133 312 0 1775 128 50 30 chr9 104872665 104872962 -12989665 + AluSx SINE Alu 1 303 -9 1854 117 11 0 chr9 104874728 104875011 -12987616 - AluSx SINE Alu -22 290 5 1699 128 37 7 chr9 104875266 104875563 -12987064 + AluSg SINE Alu 1 306 -4 707 224 0 8 chr9 104875564 104875698 -12986929 + FLAM_A SINE Alu 1 133 0 2142 94 3 3 chr9 104875948 104876245 -12986382 + AluSx SINE Alu 1 297 -15 422 297 34 76 chr9 104876882 104876979 -12985648 - MIR SINE MIR 0 262 162 1926 95 14 18 chr9 104876979 104877264 -12985363 + AluSc SINE Alu 24 307 -2 422 297 34 76 chr9 104877264 104877402 -12985225 - MIR SINE MIR -100 162 37 921 158 13 0 chr9 104877593 104877751 -12984876 + AluSq SINE Alu 137 296 -17 332 213 181 11 chr9 104877765 104877859 -12984768 - L2 LINE L2 -5 3308 3199 2158 104 10 0 chr9 104878519 104878818 -12983809 + AluSq SINE Alu 1 302 -11 2174 93 10 0 chr9 104878935 104879237 -12983390 + AluSg SINE Alu 1 305 -5 2198 99 0 0 chr9 104879572 104879866 -12982761 - AluSx SINE Alu -18 294 1 2409 47 3 0 chr9 104879931 104880227 -12982400 - AluY SINE Alu -14 297 1 1587 174 7 3 chr9 104880269 104880567 -12982060 + AluJo SINE Alu 1 299 -13 858 206 0 29 chr9 104880724 104880894 -12981733 - FRAM SINE Alu -1 165 1 478 168 131 19 chr9 104880914 104881021 -12981606 - MER69 DNA AcHobo -2393 133 15 1241 170 0 33 chr9 104881192 104881433 -12981194 + AluJo SINE Alu 72 304 -8 1556 184 0 26 chr9 104881433 104881737 -12980890 + AluJb SINE Alu 1 296 -16 2186 136 0 51 chr9 104881925 104882278 -12980349 + MER1B DNA MER1_type 3 337 0 2185 86 3 20 chr9 104882462 104882590 -12980037 + AluSp SINE Alu 11 140 -173 2071 97 17 0 chr9 104882590 104882880 -12979747 + AluSq SINE Alu 6 300 -13 2185 86 3 20 chr9 104882880 104883053 -12979574 + AluSp SINE Alu 140 307 -6 902 140 42 0 chr9 104883053 104883224 -12979403 + AluSg/x SINE Alu 134 310 0 656 200 159 0 chr9 104883237 104883382 -12979245 + FAM SINE Alu 1 168 -7 215 352 86 9 chr9 104883685 104883790 -12978837 + MIR3 SINE MIR 3 115 -93 204 329 55 0 chr9 104883857 104883930 -12978697 - L2 LINE L2 0 3272 3196 184 200 100 0 chr9 104883954 104884004 -12978623 + MIR SINE MIR 87 141 -67 2364 66 3 0 chr9 104884562 104884866 -12977761 - AluY SINE Alu -6 305 1 1453 152 16 4 chr9 104885063 104885319 -12977308 - AluJb SINE Alu -21 291 33 203 0 0 36 chr9 104885440 104885468 -12977159 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1307 178 18 22 chr9 104885540 104885657 -12976970 + AluJo SINE Alu 17 133 -179 2141 96 0 20 chr9 104885657 104885958 -12976669 + AluSg SINE Alu 2 296 -14 1307 178 18 22 chr9 104885958 104886115 -12976512 + AluJo SINE Alu 133 290 -22 23 0 0 0 chr9 104886267 104886290 -12976337 + AT_rich Low_complexity Low_complexity 1 23 0 902 158 0 0 chr9 104886290 104886423 -12976204 + FLAM_C SINE Alu 1 133 0 2459 50 3 0 chr9 104886514 104886814 -12975813 - AluY SINE Alu -10 301 1 815 173 0 0 chr9 104886893 104887026 -12975601 + FLAM_C SINE Alu 1 133 0 598 205 26 0 chr9 104887084 104887201 -12975426 - FLAM_A SINE Alu -13 120 1 400 302 55 50 chr9 104887281 104887316 -12975311 - MIR SINE MIR -60 202 169 1896 138 14 0 chr9 104887316 104887607 -12975020 + AluJb SINE Alu 1 295 -17 400 302 55 50 chr9 104887607 104887753 -12974874 - MIR SINE MIR -93 169 20 2159 98 0 7 chr9 104888085 104888381 -12974246 + AluSg SINE Alu 1 294 -16 1382 203 7 10 chr9 104888421 104888721 -12973906 - AluJo SINE Alu -13 299 1 191 352 0 33 chr9 104888801 104888892 -12973735 - MIR SINE MIR -56 206 119 2274 97 3 0 chr9 104888895 104889205 -12973422 + AluSx SINE Alu 1 311 -1 2381 72 0 0 chr9 104889407 104889711 -12972916 - AluY SINE Alu -7 304 1 2180 81 7 0 chr9 104889807 104890102 -12972525 - AluSp SINE Alu -16 297 1 743 214 0 0 chr9 104890221 104890352 -12972275 + FLAM_C SINE Alu 1 131 -12 546 114 34 0 chr9 104890410 104890498 -12972129 - AluSg/x SINE Alu -13 296 206 490 261 17 0 chr9 104890742 104890857 -12971770 + AluSg/x SINE Alu 175 291 -18 407 273 0 0 chr9 104890865 104890953 -12971674 - L2 LINE L2 -29 3284 3197 301 306 0 31 chr9 104890960 104891058 -12971569 - L3 LINE CR1 -268 1309 1215 1022 152 12 0 chr9 104891371 104891542 -12971085 - AluSg/x SINE Alu -4 308 136 2377 93 0 0 chr9 104891544 104891856 -12970771 - AluSx SINE Alu 0 312 1 1565 160 17 10 chr9 104891857 104892145 -12970482 - AluSx SINE Alu -22 290 1 * 2006 136 0 7 chr9 104892145 104892452 -12970175 - AluSx SINE Alu -7 305 1 1177 166 42 25 chr9 104892487 104892728 -12969899 + AluJb SINE Alu 60 304 -8 358 292 135 34 chr9 104893026 104893104 -12969523 - L3 LINE CR1 -25 1552 1483 2098 89 0 33 chr9 104893104 104893407 -12969220 + AluSx SINE Alu 9 301 -11 358 292 135 34 chr9 104893407 104893595 -12969032 - L3 LINE CR1 -94 1483 1259 2134 106 0 0 chr9 104893625 104893940 -12968687 - AluSp SINE Alu 0 315 1 2079 107 0 3 chr9 104893944 104894244 -12968383 - AluSg SINE Alu -11 299 1 868 118 15 7 chr9 104894248 104894384 -12968243 - AluSq/x SINE Alu -176 137 1 1738 150 3 72 chr9 104894484 104894660 -12967967 - AluSq SINE Alu -5 298 152 2054 113 0 45 chr9 104894660 104894835 -12967792 - AluSx SINE Alu -12 300 144 2172 105 0 10 chr9 104894835 104895149 -12967478 - AluY SINE Alu 0 311 1 2054 113 0 45 chr9 104895149 104895283 -12967344 - AluSx SINE Alu -168 144 5 1738 150 3 72 chr9 104895283 104895426 -12967201 - AluSq SINE Alu -151 152 1 1976 138 0 7 chr9 104895427 104895725 -12966902 - AluSq SINE Alu -17 296 1 840 149 0 0 chr9 104895734 104895855 -12966772 - FLAM_A SINE Alu -12 121 1 474 276 100 64 chr9 104895937 104896074 -12966553 + MIR SINE MIR 2 153 -109 2105 110 0 7 chr9 104896074 104896373 -12966254 + AluY SINE Alu 1 297 -14 474 276 100 64 chr9 104896373 104896485 -12966142 + MIR SINE MIR 153 260 -2 1764 138 6 31 chr9 104896599 104896918 -12965709 - AluSq SINE Alu -2 311 1 865 183 37 0 chr9 104897075 104897239 -12965388 - FRAM SINE Alu -7 169 1 332 231 45 0 chr9 104897239 104897351 -12965276 + L1M1 LINE L1 5696 5819 -302 977 116 0 94 chr9 104897352 104897533 -12965094 - AluSg/x SINE Alu -15 295 132 1704 114 52 14 chr9 104897533 104897823 -12964804 - AluSq SINE Alu -12 301 1 670 192 0 8 chr9 104897850 104897970 -12964657 + FLAM_C SINE Alu 1 119 -14 338 266 231 35 chr9 104897997 104898085 -12964542 + L1ME4a LINE L1 5822 5892 -229 2097 118 0 3 chr9 104898085 104898390 -12964237 - AluSx SINE Alu -6 306 3 338 266 231 35 chr9 104898390 104898470 -12964157 + L1ME4a LINE L1 5892 6023 -98 310 302 35 0 chr9 104898469 104898555 -12964072 - L1MC4 LINE L1 -1349 6693 6605 * 567 143 0 31 chr9 104898747 104898845 -12963782 + AluJo SINE Alu 40 134 -178 2123 104 7 3 chr9 104898847 104899156 -12963471 + AluSx SINE Alu 1 310 -2 2043 118 7 0 chr9 104899303 104899607 -12963020 - AluSx SINE Alu -6 306 1 1735 146 25 0 chr9 104899619 104899937 -12962690 - AluSx SINE Alu 0 325 1 2096 110 0 16 chr9 104900518 104900826 -12961801 + AluSx SINE Alu 1 303 -9 1408 191 3 67 chr9 104900990 104901123 -12961504 + AluJo SINE Alu 1 141 -171 1762 143 48 0 chr9 104901123 104901241 -12961386 + AluSx SINE Alu 5 116 -196 207 0 0 0 chr9 104901241 104901264 -12961363 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1762 143 48 0 chr9 104901264 104901438 -12961189 + AluSx SINE Alu 116 311 -1 1408 191 3 67 chr9 104901438 104901634 -12960993 + AluJo SINE Alu 141 309 -3 263 307 23 0 chr9 104901714 104901790 -12960837 - MIR SINE MIR -108 154 74 1488 164 0 25 chr9 104901790 104902064 -12960563 + AluJb SINE Alu 1 267 -45 263 307 23 0 chr9 104902064 104902075 -12960552 - MIR SINE MIR -188 74 65 243 61 0 0 chr9 104902077 104902110 -12960517 + (GA)n Simple_repeat Simple_repeat 2 34 0 294 300 30 20 chr9 104902370 104902470 -12960157 - MIR SINE MIR -114 148 48 2318 57 0 35 chr9 104902474 104902792 -12959835 - AluY SINE Alu -4 307 1 1098 127 0 0 chr9 104903249 104903407 -12959220 + AluSg/x SINE Alu 130 287 -25 207 0 0 0 chr9 104903410 104903433 -12959194 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 537 231 266 0 chr9 104903567 104903766 -12958861 - MIR SINE MIR -9 253 2 2172 91 0 19 chr9 104903831 104904140 -12958487 - AluSg SINE Alu -7 303 1 197 286 53 138 chr9 104904140 104904329 -12958298 - L2 LINE L2 -28 3285 3113 28 0 0 0 chr9 104904391 104904419 -12958208 + AT_rich Low_complexity Low_complexity 1 28 0 823 255 80 28 chr9 104904505 104904531 -12958096 + L1ME4a LINE L1 5382 5405 -716 1772 126 36 0 chr9 104904531 104904809 -12957818 - AluSx SINE Alu -24 288 1 823 255 80 28 chr9 104904809 104905205 -12957422 + L1ME4a LINE L1 5405 5826 -295 1897 139 7 7 chr9 104905205 104905500 -12957127 + AluJb SINE Alu 1 295 -17 2165 114 3 0 chr9 104905725 104906031 -12956596 + AluSp SINE Alu 1 307 -6 312 212 165 0 chr9 104906056 104906141 -12956486 + L1ME4a LINE L1 6023 6121 0 182 36 0 36 chr9 104906281 104906309 -12956318 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1014 226 9 5 chr9 104906381 104906598 -12956029 - MER20 DNA MER1_type 0 219 2 304 289 19 75 chr9 104906603 104906667 -12955960 + MIR3 SINE MIR 42 108 -100 2059 113 3 13 chr9 104906667 104906978 -12955649 - AluSx SINE Alu -4 308 1 304 289 19 75 chr9 104906978 104907072 -12955555 + MIR3 SINE MIR 108 191 -17 210 250 0 0 chr9 104907221 104907269 -12955358 + (TATG)n Simple_repeat Simple_repeat 3 50 0 1870 118 3 67 chr9 104907849 104908179 -12954448 + AluSc SINE Alu 1 309 0 260 243 54 0 chr9 104908197 104908271 -12954356 + MLT1K LTR MaLR 511 588 0 2125 101 27 0 chr9 104908299 104908597 -12954030 + AluY SINE Alu 1 306 -5 264 263 228 9 chr9 104908646 104908760 -12953867 - MIR SINE MIR -50 212 74 1970 101 0 11 chr9 104908835 104909111 -12953516 - AluSx SINE Alu -16 296 24 548 260 61 28 chr9 104909184 104909365 -12953262 - Charlie8 DNA MER1_type -2159 258 72 1250 112 5 5 chr9 104909369 104909557 -12953070 + AluSx SINE Alu 2 189 -123 1016 55 7 41 chr9 104909657 104909802 -12952825 - AluY SINE Alu -171 140 1 798 117 0 0 chr9 104909802 104909913 -12952714 + AluSx SINE Alu 186 296 -14 1948 114 44 7 chr9 104910016 104910314 -12952313 - AluSc SINE Alu 0 309 1 2409 65 0 3 chr9 104910322 104910628 -12951999 - AluY SINE Alu -4 307 3 771 300 56 69 chr9 104910655 104911102 -12951525 - L2 LINE L2 0 3272 2832 2172 89 3 3 chr9 104911102 104911394 -12951233 + AluSx SINE Alu 1 292 -20 1966 125 0 10 chr9 104911398 104911694 -12950933 + AluSg SINE Alu 6 298 -12 575 301 26 10 chr9 104911704 104911897 -12950730 - L2 LINE L2 -569 2745 2550 2021 119 0 3 chr9 104911917 104912211 -12950416 + AluSg SINE Alu 1 293 -17 1190 122 0 6 chr9 104912211 104912391 -12950236 + AluSp SINE Alu 134 312 -1 1993 134 3 10 chr9 104912602 104912908 -12949719 - AluSx SINE Alu -8 304 1 261 304 63 51 chr9 104913397 104913491 -12949136 - MIR SINE MIR -81 181 86 635 264 91 54 chr9 104913491 104913643 -12948984 + MIR SINE MIR 4 170 -92 2381 70 3 0 chr9 104913643 104913944 -12948683 - AluSp SINE Alu -11 302 1 635 264 91 54 chr9 104913944 104914033 -12948594 + MIR SINE MIR 170 254 -8 1755 138 43 0 chr9 104914241 104914523 -12948104 - AluSx SINE Alu -18 294 1 235 349 83 39 chr9 104914594 104914932 -12947695 + L2 LINE L2 1917 2269 -1045 305 230 16 111 chr9 104914934 104914963 -12947664 - MIR SINE MIR -71 191 161 2100 97 17 0 chr9 104914963 104915261 -12947366 + AluSc SINE Alu 1 303 -6 305 230 16 111 chr9 104915261 104915357 -12947270 - MIR SINE MIR -101 161 78 200 225 0 70 chr9 104915367 104915438 -12947189 - L2 LINE L2 -75 3238 3173 271 266 52 121 chr9 104915550 104915626 -12947001 - L2 LINE L2 -213 3059 2979 1505 194 17 23 chr9 104915626 104915925 -12946702 + AluJo SINE Alu 1 297 -15 271 266 52 121 chr9 104915925 104916096 -12946531 - L2 LINE L2 -293 2979 2829 1927 121 3 7 chr9 104916147 104916449 -12946178 - AluSx SINE Alu 0 301 1 388 41 0 0 chr9 104916459 104916508 -12946119 - AluY SINE Alu -5 296 248 1536 53 0 5 chr9 104916508 104916697 -12945930 - AluY SINE Alu -123 188 1 2160 113 3 0 chr9 104916697 104916999 -12945628 - AluSx SINE Alu -9 303 1 191 387 13 0 chr9 104917000 104917075 -12945552 - L2 LINE L2 -529 2785 2710 2086 102 0 0 chr9 104917883 104918202 -12944425 - AluSp SINE Alu 0 319 1 1775 152 7 10 chr9 104918208 104918511 -12944116 - AluSx SINE Alu -10 302 1 1725 130 20 7 chr9 104918511 104918810 -12943817 - AluSc SINE Alu -5 304 1 1931 120 0 30 chr9 104918844 104919145 -12943482 + AluSx SINE Alu 4 295 -17 581 301 87 24 chr9 104919166 104919372 -12943255 + MIR SINE MIR 44 262 0 1838 120 13 36 chr9 104921855 104922156 -12940471 - AluSx SINE Alu -18 294 1 2094 101 0 0 chr9 104923644 104923930 -12938697 - AluSx SINE Alu -21 291 6 1489 115 165 11 chr9 104924063 104924324 -12938303 - AluSx SINE Alu -11 301 1 394 233 47 12 chr9 104925674 104925760 -12936867 - AluJo SINE Alu -90 212 124 1643 89 67 52 chr9 104926276 104926545 -12936082 + AluSc SINE Alu 24 296 -13 373 242 34 35 chr9 104927049 104927168 -12935459 - L1MC4 LINE L1 -1139 6702 6548 * 387 240 0 52 chr9 104927094 104927190 -12935437 + L1MC4 LINE L1 6613 6703 -1339 2132 102 7 0 chr9 104927195 104927490 -12935137 - AluSp SINE Alu -16 297 1 2402 67 0 13 chr9 104928111 104928426 -12934201 + AluY SINE Alu 1 311 0 2292 66 3 10 chr9 104928646 104928949 -12933678 - AluSc SINE Alu 0 309 9 192 40 0 0 chr9 104929482 104929507 -12933120 + (TC)n Simple_repeat Simple_repeat 2 26 0 * 261 0 0 0 chr9 104929506 104929535 -12933092 + (TG)n Simple_repeat Simple_repeat 2 30 0 2482 55 3 0 chr9 104929554 104929862 -12932765 + AluSp SINE Alu 1 309 -4 35 41 0 0 chr9 104929933 104929982 -12932645 + AT_rich Low_complexity Low_complexity 1 49 0 800 87 0 0 chr9 104929982 104930086 -12932541 - U6 snRNA snRNA -3 104 1 1586 171 16 19 chr9 104930111 104930420 -12932207 - AluJo SINE Alu -4 308 1 2199 84 7 0 chr9 104931431 104931728 -12930899 - AluSg1 SINE Alu -10 299 1 1385 175 51 4 chr9 104931738 104932012 -12930615 - AluJo SINE Alu -25 287 1 21 36 0 0 chr9 104932066 104932094 -12930533 + AT_rich Low_complexity Low_complexity 1 28 0 957 128 6 50 chr9 104932207 104932386 -12930241 - AluSq SINE Alu -6 307 137 1564 183 42 0 chr9 104932567 104932852 -12929775 - AluJb SINE Alu -15 297 1 869 131 0 62 chr9 104932898 104933043 -12929584 + AluJb SINE Alu 1 136 -176 1815 133 17 23 chr9 104933043 104933345 -12929282 + AluSq SINE Alu 1 300 -13 1140 130 0 0 chr9 104934257 104934418 -12928209 + AluJb SINE Alu 136 296 -16 22 35 0 0 chr9 104934448 104934477 -12928150 + AT_rich Low_complexity Low_complexity 1 29 0 307 281 21 21 chr9 104934683 104934779 -12927848 - MIR SINE MIR -10 252 157 269 313 80 94 chr9 104934793 104935081 -12927546 - L2 LINE L2 -44 3228 2945 2284 100 0 0 chr9 104935378 104935689 -12926938 - AluSq SINE Alu 0 313 3 2252 90 7 0 chr9 104936582 104936892 -12925735 - AluSp SINE Alu -1 312 1 1909 112 63 3 chr9 104936892 104937177 -12925450 - AluSq SINE Alu -11 302 1 247 242 48 199 chr9 104937178 104937409 -12925218 - L1MCc LINE L1 -5377 1046 851 667 242 22 16 chr9 104937646 104937828 -12924799 - L1MCc LINE L1 -5965 458 276 1296 111 70 10 chr9 104937829 104938028 -12924599 - MSTD LTR MaLR 0 396 186 419 121 0 0 chr9 104938032 104938098 -12924529 - Alu SINE Alu -3 307 242 1699 128 37 7 chr9 104938437 104938734 -12923893 + AluSg SINE Alu 1 306 -4 707 224 0 8 chr9 104938735 104938869 -12923758 + FLAM_A SINE Alu 1 133 0 2088 103 3 3 chr9 104939119 104939419 -12923208 + AluSx SINE Alu 1 300 -12 2009 130 0 0 chr9 104939643 104939944 -12922683 + AluSx SINE Alu 1 301 -11 2023 82 0 4 chr9 104940666 104940933 -12921694 - AluSc SINE Alu -6 303 38 2130 186 49 10 chr9 104940939 104941427 -12921200 - Charlie4a DNA MER1_type 0 508 2 206 220 0 34 chr9 104942238 104942297 -12920330 + (CCG)n Simple_repeat Simple_repeat 2 58 0 2453 37 3 0 chr9 104942704 104943000 -12919627 - AluY SINE Alu -14 297 1 1100 257 67 18 chr9 104943223 104943565 -12919062 - L3 LINE CR1 -13 1564 1206 1689 161 7 3 chr9 104943663 104943949 -12918678 + AluJb SINE Alu 5 291 -21 2467 59 0 0 chr9 104944146 104944452 -12918175 + AluY SINE Alu 1 306 -5 184 200 100 0 chr9 104945012 104945062 -12917565 - MIR SINE MIR -67 141 87 204 329 55 0 chr9 104945086 104945159 -12917468 + L2 LINE L2 3196 3272 0 230 343 86 9 chr9 104945226 104945331 -12917296 - MIR3 SINE MIR -93 115 3 636 207 159 0 chr9 104945635 104945780 -12916847 - FAM SINE Alu -7 168 1 901 140 42 0 chr9 104945793 104945964 -12916663 - AluSg/x SINE Alu 0 308 132 2185 86 3 20 chr9 104945964 104946137 -12916490 - AluSp SINE Alu -6 307 140 2071 97 17 0 chr9 104946137 104946427 -12916200 - AluSq SINE Alu -13 300 6 2185 86 3 20 chr9 104946427 104946555 -12916072 - AluSp SINE Alu -173 140 11 2186 136 0 51 chr9 104946739 104947092 -12915535 - MER1B DNA MER1_type 0 337 3 1556 184 0 26 chr9 104947280 104947584 -12915043 - AluJb SINE Alu -16 296 1 1241 170 0 33 chr9 104947584 104947825 -12914802 - AluJo SINE Alu -8 304 72 478 168 131 19 chr9 104947995 104948102 -12914525 + MER69 DNA AcHobo 15 133 -2393 858 206 0 29 chr9 104948122 104948292 -12914335 + FRAM SINE Alu 1 165 -1 1567 182 7 0 chr9 104948449 104948746 -12913881 - AluJo SINE Alu -13 299 1 2452 47 0 0 chr9 104948788 104949085 -12913542 + AluY SINE Alu 1 297 -14 2197 107 3 0 chr9 104949150 104949458 -12913169 + AluSx SINE Alu 1 309 -3 2000 134 0 6 chr9 104949785 104950099 -12912528 - AluSx SINE Alu 0 312 1 1495 98 0 10 chr9 104950156 104950361 -12912266 + AluSp SINE Alu 105 307 -6 1261 177 52 72 chr9 104950409 104950714 -12911913 - AluJo SINE Alu -3 299 1 2034 92 0 60 chr9 104950721 104951037 -12911590 - AluY SINE Alu -14 297 1 442 266 22 7 chr9 104951075 104951214 -12911413 + L1M4 LINE L1 4611 4751 -1395 183 80 0 0 chr9 104951236 104951261 -12911366 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 1989 106 0 7 chr9 104951317 104951591 -12911036 + AluSx SINE Alu 22 293 -19 540 181 181 0 chr9 104951622 104951727 -12910900 + AluSc SINE Alu 166 289 -20 2018 113 31 0 chr9 104951727 104952018 -12910609 + AluSc SINE Alu 1 300 -9 1920 118 0 60 chr9 104952034 104952366 -12910261 + AluSx SINE Alu 1 312 0 1893 134 0 51 chr9 104952431 104952745 -12909882 + AluSx SINE Alu 1 298 -14 1918 139 10 0 chr9 104952866 104953169 -12909458 + AluSq SINE Alu 1 306 -7 252 0 0 0 chr9 104953206 104953234 -12909393 + (TG)n Simple_repeat Simple_repeat 2 29 0 1884 128 3 7 chr9 104953255 104953545 -12909082 - AluSx SINE Alu -23 289 1 1365 171 11 49 chr9 104953575 104953709 -12908918 + AluJb SINE Alu 1 122 -190 1551 173 46 3 chr9 104953709 104953992 -12908635 + AluJb SINE Alu 1 295 -17 1365 171 11 49 chr9 104953992 104954120 -12908507 + AluJb SINE Alu 122 253 -59 2109 96 7 0 chr9 104954141 104954454 -12908173 + AluSq SINE Alu 1 315 0 358 292 135 34 chr9 104954484 104954672 -12907955 + L3 LINE CR1 1259 1483 -94 2149 86 0 30 chr9 104954672 104954974 -12907653 - AluSx SINE Alu -11 301 9 358 292 135 34 chr9 104954974 104955052 -12907575 + L3 LINE CR1 1483 1552 -25 1177 166 42 25 chr9 104955350 104955591 -12907036 - AluJb SINE Alu -8 304 60 2014 136 0 7 chr9 104955626 104955935 -12906692 + AluSx SINE Alu 1 307 -5 1993 118 0 3 chr9 104955935 104956223 -12906404 + AluSg SINE Alu 1 288 -22 2377 93 0 0 chr9 104956224 104956536 -12906091 + AluSx SINE Alu 1 312 0 1022 152 12 0 chr9 104956538 104956709 -12905918 + AluSg/x SINE Alu 134 306 -4 301 306 0 31 chr9 104957022 104957120 -12905507 + L3 LINE CR1 1215 1309 -268 407 273 0 0 chr9 104957127 104957215 -12905412 + L2 LINE L2 3197 3284 -29 1777 157 3 0 chr9 104957223 104957516 -12905111 - AluJb SINE Alu -18 294 1 200 311 14 14 chr9 104957537 104957611 -12905016 + L3 LINE CR1 1277 1350 -227 201 203 94 62 chr9 104957695 104957759 -12904868 + L3 LINE CR1 1502 1567 -10 2408 61 3 0 chr9 104957791 104958086 -12904541 - AluY SINE Alu -15 296 1 743 214 0 0 chr9 104958205 104958336 -12904291 + FLAM_C SINE Alu 1 131 -12 1545 127 13 0 chr9 104958394 104958631 -12903996 - AluSx SINE Alu -13 299 60 718 148 0 25 chr9 104958840 104958962 -12903665 - AluSq/x SINE Alu -192 120 2 1860 139 13 3 chr9 104959096 104959398 -12903229 + AluSx SINE Alu 3 307 -5 325 113 77 7 chr9 104959400 104959622 -12903005 + AluSx SINE Alu 3 301 0 822 149 39 26 chr9 104959881 104960035 -12902592 + FRAM SINE Alu 1 155 -21 34 0 0 0 chr9 104960081 104960115 -12902512 + AT_rich Low_complexity Low_complexity 1 34 0 1569 149 0 102 chr9 104960277 104960612 -12902015 + AluJb SINE Alu 2 302 0 2176 108 0 6 chr9 104960915 104961230 -12901397 - AluSq SINE Alu 0 313 1 1187 168 32 88 chr9 104961271 104961400 -12901227 + AluJo SINE Alu 18 124 -188 1956 116 39 0 chr9 104961400 104961685 -12900942 + AluSp SINE Alu 1 296 -17 1187 168 32 88 chr9 104961685 104961840 -12900787 + AluJo SINE Alu 124 286 -26 277 213 0 0 chr9 104961841 104961888 -12900739 - AluJ/FLAM SINE Alu -220 82 36 338 200 147 0 chr9 104961909 104962004 -12900623 + L1MC4 LINE L1 7927 8035 -7 1923 122 20 7 chr9 104962055 104962359 -12900268 + AluSg SINE Alu 2 309 -1 2290 57 0 0 chr9 104962496 104962775 -12899852 + AluY SINE Alu 1 279 -32 278 26 26 0 chr9 104962775 104962814 -12899813 + (TAAAA)n Simple_repeat Simple_repeat 1 40 0 1171 114 0 0 chr9 104962814 104962981 -12899646 + AluSp SINE Alu 133 299 -14 301 247 135 15 chr9 104963029 104963169 -12899458 - L1ME LINE L1 -522 5640 5477 633 163 22 52 chr9 104963189 104963324 -12899303 - FLAM_C SINE Alu -2 131 1 1893 124 3 7 chr9 104963398 104963705 -12898922 + AluSg SINE Alu 1 306 -4 707 224 0 8 chr9 104963706 104963840 -12898787 + FLAM_A SINE Alu 1 133 0 2088 103 3 3 chr9 104964090 104964390 -12898237 + AluSx SINE Alu 1 300 -12 1915 128 0 0 chr9 104964614 104964915 -12897712 + AluSx SINE Alu 1 301 0 2023 82 0 4 chr9 104965637 104965904 -12896723 - AluSc SINE Alu -6 303 38 2130 186 49 10 chr9 104965910 104966398 -12896229 - Charlie4a DNA MER1_type 0 508 2 206 220 0 34 chr9 104967209 104967268 -12895359 + (CCG)n Simple_repeat Simple_repeat 2 58 0 2453 37 3 0 chr9 104967675 104967971 -12894656 - AluY SINE Alu -14 297 1 1100 257 67 18 chr9 104968194 104968536 -12894091 - L3 LINE CR1 -13 1564 1206 1512 179 11 3 chr9 104968634 104968919 -12893708 + AluJb SINE Alu 5 291 -21 2314 65 0 3 chr9 104969121 104969412 -12893215 + AluSc SINE Alu 6 295 -14 422 297 34 76 chr9 104970049 104970146 -12892481 - MIR SINE MIR 0 262 162 1950 91 14 18 chr9 104970146 104970431 -12892196 + AluSc SINE Alu 24 307 -2 422 297 34 76 chr9 104970431 104970569 -12892058 - MIR SINE MIR -100 162 37 2010 114 7 3 chr9 104970629 104970926 -12891701 + AluSx SINE Alu 6 303 -9 21 0 0 0 chr9 104971105 104971126 -12891501 + AT_rich Low_complexity Low_complexity 1 21 0 2238 79 3 20 chr9 104971138 104971442 -12891185 + AluSp SINE Alu 1 299 -14 1905 121 3 3 chr9 104972024 104972314 -12890313 - AluSx SINE Alu -9 303 14 213 94 0 0 chr9 104972601 104972633 -12889994 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 22 35 0 0 chr9 104972729 104972758 -12889869 + AT_rich Low_complexity Low_complexity 1 29 0 1752 175 79 12 chr9 104972954 104973136 -12889491 - MLT1A1 LTR MaLR 0 365 197 2110 103 3 0 chr9 104973136 104973427 -12889200 - AluSp SINE Alu -21 292 1 1752 175 79 12 chr9 104973427 104973586 -12889041 - MLT1A1 LTR MaLR -168 197 1 2409 87 0 0 chr9 104973599 104973910 -12888717 - AluY SINE Alu 0 311 1 1924 138 7 0 chr9 104973911 104974208 -12888419 - AluSx SINE Alu -13 299 1 2102 123 7 0 chr9 104974681 104975015 -12887612 + AluSq SINE Alu 1 313 0 1697 129 30 59 chr9 104975513 104975816 -12886811 - AluSq SINE Alu -19 294 1 1939 141 7 0 chr9 104976152 104976451 -12886176 - AluSx SINE Alu -11 301 1 2138 112 0 0 chr9 104977039 104977335 -12885292 - AluSx SINE Alu -16 296 1 634 287 44 27 chr9 104978513 104978851 -12883776 + L1ME4a LINE L1 5512 5855 -266 1939 97 3 33 chr9 104978915 104979214 -12883413 - AluSg SINE Alu -20 290 1 2825 225 94 63 chr9 104979216 104979322 -12883305 - L1M4 LINE L1 -5402 1140 1039 4844 47 36 88 chr9 104979322 104980041 -12882586 + L1PA7 LINE L1 5467 6148 -6 2825 225 94 63 chr9 104980041 104981009 -12881618 - L1M4 LINE L1 -5503 1039 33 2447 46 0 10 chr9 104981165 104981469 -12881158 + AluY SINE Alu 1 301 -10 218 261 31 31 chr9 104981500 104981565 -12881062 + MER5B DNA MER1_type 13 77 -101 1313 203 30 0 chr9 104981719 104981951 -12880676 + Tigger7 DNA MER2_type 2 240 -493 318 238 0 0 chr9 104981962 104982025 -12880602 + Tigger7 DNA MER2_type 2392 2454 -37 876 48 0 0 chr9 104982165 104982270 -12880357 + AluSp SINE Alu 1 105 -208 460 171 0 34 chr9 104983034 104983122 -12879505 - AluJo SINE Alu -178 134 50 278 245 53 21 chr9 104983142 104983236 -12879391 - L1ME1 LINE L1 -5 6161 6065 757 122 0 82 chr9 104983275 104983422 -12879205 - L1PA16 LINE L1 0 6166 6032 2178 109 0 3 chr9 104983422 104983733 -12878894 - AluSx SINE Alu -2 310 1 493 230 73 54 chr9 104983741 104983945 -12878682 - L1MC5 LINE L1 -48 7913 7706 5844 31 14 13 chr9 104984122 104985042 -12877585 - SVA Other Other -1096 1386 57 234 0 0 0 chr9 104985042 104985068 -12877559 + (GGGAGA)n Simple_repeat Simple_repeat 1 26 0 2208 104 0 0 chr9 104985653 104985952 -12876675 - AluY SINE Alu -12 299 1 763 180 8 0 chr9 104986394 104986522 -12876105 - FLAM_C SINE Alu -10 133 5 1095 160 33 73 chr9 104986526 104986801 -12875826 - L1MC3 LINE L1 -10 7775 7512 1339 142 28 108 chr9 104986901 104987087 -12875540 - AluYb8 SINE Alu -19 299 148 2235 87 0 0 chr9 104987087 104987376 -12875251 + AluSc SINE Alu 12 300 -9 1339 142 28 108 chr9 104987376 104987514 -12875113 - AluYb8 SINE Alu -170 148 1 321 337 44 39 chr9 104987773 104987954 -12874673 - MIR SINE MIR -74 188 7 2123 99 3 0 chr9 104988094 104988436 -12874191 - AluSx SINE Alu 0 343 1 1379 194 3 23 chr9 104988441 104988740 -12873887 - AluJb SINE Alu -19 293 1 2105 109 0 10 chr9 104988950 104989253 -12873374 - AluSx SINE Alu -12 300 1 1944 122 20 7 chr9 104989258 104989554 -12873073 - AluSg SINE Alu -9 301 2 775 111 16 24 chr9 104989557 104989683 -12872944 - AluJo/FLAM SINE Alu -182 130 6 1753 146 58 41 chr9 104989710 104990052 -12872575 - MER7A DNA MER2_type 0 346 1 1056 221 4 39 chr9 104990133 104990364 -12872263 - MER58A DNA MER1_type 0 224 2 2380 92 0 13 chr9 104990522 104990839 -12871788 - AluSq SINE Alu 0 313 1 1767 186 3 0 chr9 104990885 104991186 -12871441 - AluJb SINE Alu -10 302 1 1545 162 3 95 chr9 104991207 104991522 -12871105 - AluJo SINE Alu -16 286 1 2315 103 0 0 chr9 104991882 104992173 -12870454 + AluSq SINE Alu 3 293 -20 1545 146 120 11 chr9 104992334 104992609 -12870018 + AluJb SINE Alu 1 305 -7 2152 135 3 0 chr9 104992814 104993118 -12869509 - AluSx SINE Alu -7 305 1 2401 88 0 0 chr9 104993191 104993488 -12869139 - AluSg SINE Alu -13 297 1 846 144 0 8 chr9 104993623 104993755 -12868872 - FLAM_C SINE Alu -2 131 1 602 299 203 23 chr9 104993763 104994158 -12868469 - L2 LINE L2 -3 3310 2845 389 221 32 11 chr9 104994169 104994264 -12868363 - MER94 DNA DNA -34 100 4 5101 237 73 33 chr9 104994321 104995804 -12866823 - L2 LINE L2 -552 2762 1340 1691 164 63 0 chr9 104995804 104996091 -12866536 + AluJb SINE Alu 1 305 -7 5101 237 73 33 chr9 104996091 104996110 -12866517 - L2 LINE L2 -1974 1340 1323 1533 178 7 7 chr9 104996110 104996380 -12866247 + AluJb SINE Alu 28 297 -15 5101 237 73 33 chr9 104996380 104996708 -12865919 - L2 LINE L2 -1991 1323 857 1011 256 86 110 chr9 104996711 104997039 -12865588 - L2 LINE L2 -2753 561 227 1554 176 45 17 chr9 104997039 104997328 -12865299 + AluJb SINE Alu 2 298 -14 1011 256 86 110 chr9 104997328 104997480 -12865147 - L2 LINE L2 -3087 227 93 2176 104 17 0 chr9 104997480 104997769 -12864858 - AluSx SINE Alu -18 294 1 1011 256 86 110 chr9 104997769 104997825 -12864802 - L2 LINE L2 -3221 93 37 320 215 183 0 chr9 104998429 104998522 -12864105 + L2 LINE L2 3199 3308 -5 1118 133 12 0 chr9 104998536 104998701 -12863926 - AluSq SINE Alu -17 296 130 901 137 32 9 chr9 104998701 104999135 -12863492 + (TA)n Simple_repeat Simple_repeat 1 443 0 1218 186 0 0 chr9 104999284 104999483 -12863144 - AluSq SINE Alu -114 199 1 2281 101 3 3 chr9 104999491 104999788 -12862839 - AluSg SINE Alu -13 297 1 253 229 254 50 chr9 105000113 105000314 -12862313 + MIR SINE MIR 15 256 -6 2247 119 3 0 chr9 105000572 105000874 -12861753 - AluSx SINE Alu -9 303 1 1208 137 0 0 chr9 105001309 105001484 -12861143 - AluSg/x SINE Alu 0 309 135 2241 117 7 0 chr9 105001501 105001809 -12860818 - AluSx SINE Alu -2 310 1 2167 124 13 0 chr9 105001809 105002116 -12860511 - AluSx SINE Alu -1 311 1 1152 260 119 42 chr9 105002335 105002898 -12859729 - L2 LINE L2 0 3313 2663 2266 106 0 0 chr9 105002898 105003202 -12859425 - AluSx SINE Alu 0 304 1 1152 260 119 42 chr9 105003202 105003437 -12859190 - L2 LINE L2 -650 2663 2448 385 254 69 0 chr9 105003458 105003588 -12859039 + L1ME4a LINE L1 5979 6117 -4 2185 112 3 7 chr9 105003638 105003943 -12858684 - AluSc SINE Alu -4 305 2 2379 75 3 44 chr9 105004008 105004329 -12858298 - AluSp SINE Alu -5 308 1 24 22 0 43 chr9 105004332 105004355 -12858272 + AT_rich Low_complexity Low_complexity 1 23 -21 942 138 0 0 chr9 105004355 105004485 -12858142 - FLAM_A SINE Alu -2 131 2 24 22 0 43 chr9 105004485 105004507 -12858120 + AT_rich Low_complexity Low_complexity 23 44 0 2231 78 10 39 chr9 105004711 105005018 -12857609 + AluSc SINE Alu 1 298 -11 2165 98 78 29 chr9 105005352 105005699 -12856928 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr9 105006396 105006417 -12856210 + AT_rich Low_complexity Low_complexity 1 21 0 1661 192 31 0 chr9 105006424 105006711 -12855916 - AluJo SINE Alu -12 300 5 2247 112 0 0 chr9 105007170 105007464 -12855163 + AluSx SINE Alu 15 308 -4 2101 114 10 13 chr9 105007474 105007772 -12854855 + AluSx SINE Alu 3 299 -13 2176 78 0 4 chr9 105007790 105008085 -12854542 + AluSx SINE Alu 16 309 0 680 206 0 57 chr9 105008339 105008480 -12854147 - FLAM_A SINE Alu 0 133 1 2377 69 0 3 chr9 105008492 105008781 -12853846 - AluSc SINE Alu -21 288 1 589 181 81 12 chr9 105008832 105008992 -12853635 - Charlie1 DNA MER1_type 0 2761 2591 1143 139 0 0 chr9 105008997 105009155 -12853472 + AluSp SINE Alu 137 294 -19 1706 168 62 65 chr9 105009157 105009534 -12853093 - Charlie1 DNA MER1_type -163 2598 2221 2050 156 0 0 chr9 105009534 105009841 -12852786 - AluSx SINE Alu -5 307 1 1706 168 62 65 chr9 105009841 105009897 -12852730 - Charlie1 DNA MER1_type -540 2221 2166 2049 190 19 30 chr9 105009927 105010268 -12852359 - Charlie1 DNA MER1_type -686 2075 1738 1833 134 72 7 chr9 105010268 105010559 -12852068 - AluSx SINE Alu -2 310 1 2049 190 19 30 chr9 105010559 105010644 -12851983 - Charlie1 DNA MER1_type -1023 1738 1654 1064 177 0 35 chr9 105010645 105010843 -12851784 - AluJo SINE Alu -13 299 109 1990 134 14 0 chr9 105010843 105011134 -12851493 + AluSx SINE Alu 1 295 -17 24 32 0 0 chr9 105011200 105011231 -12851396 + AT_rich Low_complexity Low_complexity 1 31 0 1696 101 0 0 chr9 105011566 105011785 -12850842 + AluSg/x SINE Alu 85 303 -9 21 0 0 0 chr9 105011964 105011985 -12850642 + AT_rich Low_complexity Low_complexity 1 21 0 2367 79 3 20 chr9 105011997 105012301 -12850326 + AluSp SINE Alu 1 299 -14 1948 112 63 0 chr9 105012883 105013168 -12849459 - AluSx SINE Alu -9 303 1 2242 103 0 0 chr9 105013365 105013657 -12848970 - AluSg SINE Alu -18 292 1 207 114 0 0 chr9 105014812 105014847 -12847780 + (T)n Simple_repeat Simple_repeat 1 35 0 23 54 0 0 chr9 105015262 105015299 -12847328 + AT_rich Low_complexity Low_complexity 1 37 0 218 71 0 48 chr9 105015305 105015347 -12847280 + (TTTTTA)n Simple_repeat Simple_repeat 3 42 0 1988 104 0 0 chr9 105015394 105015653 -12846974 - AluSx SINE Alu -53 259 1 2398 84 7 0 chr9 105015799 105016097 -12846530 - AluSp SINE Alu -13 300 1 647 236 26 51 chr9 105016097 105016292 -12846335 - MIR SINE MIR -54 208 19 28 38 0 19 chr9 105016394 105016428 -12846199 + AT_rich Low_complexity Low_complexity 1 35 -17 2120 113 32 0 chr9 105016428 105016711 -12845916 - AluSq SINE Alu -21 292 1 28 38 0 19 chr9 105016711 105016729 -12845898 + AT_rich Low_complexity Low_complexity 35 52 0 1831 161 0 23 chr9 105016803 105017108 -12845519 + AluJb SINE Alu 2 299 -13 1898 143 11 0 chr9 105017761 105018040 -12844587 + AluJb SINE Alu 17 298 -14 1622 184 7 23 chr9 105018097 105018401 -12844226 - AluJo SINE Alu -13 299 1 23 0 0 0 chr9 105018498 105018521 -12844106 + AT_rich Low_complexity Low_complexity 1 23 0 316 193 0 0 chr9 105018521 105018578 -12844049 - L2 LINE L2 -14 3258 3202 254 182 0 55 chr9 105018927 105018982 -12843645 + L2 LINE L2 3262 3313 0 1794 147 61 4 chr9 105019021 105019300 -12843327 - AluJb SINE Alu -14 298 4 2262 109 0 0 chr9 105019574 105019877 -12842750 + AluSx SINE Alu 1 303 -9 1943 179 0 0 chr9 105019888 105020190 -12842437 + AluJb SINE Alu 1 302 -10 2095 129 10 0 chr9 105020265 105020560 -12842067 + AluSx SINE Alu 1 298 -14 2130 106 13 13 chr9 105020623 105020934 -12841693 + AluSx SINE Alu 1 311 -1 1958 149 0 3 chr9 105021097 105021393 -12841234 - AluY SINE Alu -16 295 1 288 172 0 31 chr9 105021951 105022015 -12840612 + AluSc SINE Alu 238 299 0 260 265 20 41 chr9 105022015 105022113 -12840514 - MIR SINE MIR -89 173 78 213 266 52 121 chr9 105022306 105022382 -12840245 - L2 LINE L2 -213 3059 2979 1615 194 17 23 chr9 105022382 105022681 -12839946 + AluJo SINE Alu 1 297 -15 213 266 52 121 chr9 105022681 105022852 -12839775 - L2 LINE L2 -293 2979 2829 1936 138 3 7 chr9 105022903 105023205 -12839422 - AluSx SINE Alu 0 301 1 375 82 0 0 chr9 105023215 105023264 -12839363 - AluY SINE Alu -5 295 247 1654 58 0 0 chr9 105023264 105023452 -12839175 - AluY SINE Alu -123 188 1 2242 117 3 0 chr9 105023452 105023752 -12838875 - AluSx SINE Alu -11 301 1 2212 102 0 0 chr9 105024636 105024955 -12837672 - AluSp SINE Alu 0 319 1 1921 148 7 10 chr9 105024961 105025264 -12837363 - AluSx SINE Alu -10 302 1 2237 108 3 10 chr9 105025264 105025570 -12837057 - AluSg SINE Alu -5 305 1 1420 180 31 30 chr9 105025583 105025908 -12836719 + L1ME3 LINE L1 5853 6334 0 1892 152 7 3 chr9 105026166 105026456 -12836171 - AluJb SINE Alu -17 295 5 2032 151 3 3 chr9 105026529 105026841 -12835786 - AluSq SINE Alu -1 312 1 2098 114 20 0 chr9 105028113 105028410 -12834217 - AluSx SINE Alu -9 303 1 513 100 0 12 chr9 105028611 105028691 -12833936 + AluSc SINE Alu 224 302 -7 * 702 176 0 8 chr9 105028685 105028804 -12833823 - AluJo/FLAM SINE Alu -194 118 1 384 330 52 17 chr9 105028940 105029113 -12833514 + L2 LINE L2 2881 3059 -213 309 167 0 15 chr9 105030084 105030150 -12832477 + Alu SINE Alu 237 301 0 2849 7 0 7 chr9 105030193 105030501 -12832126 - AluYb8 SINE Alu -12 306 1 186 235 33 131 chr9 105030774 105030842 -12831785 + MIR SINE MIR 97 143 -119 2273 81 0 29 chr9 105030842 105031150 -12831477 + AluSg SINE Alu 1 299 -11 186 235 33 131 chr9 105031150 105031234 -12831393 + MIR SINE MIR 143 234 -28 2207 112 3 0 chr9 105031532 105031819 -12830808 + AluSg SINE Alu 1 288 -22 1124 90 14 0 chr9 105031826 105031970 -12830657 + AluSg/x SINE Alu 147 292 -18 302 262 90 41 chr9 105031970 105032115 -12830512 + MIR SINE MIR 59 210 -52 2038 127 10 0 chr9 105032513 105032805 -12829822 - AluSx SINE Alu -14 298 4 2272 76 7 26 chr9 105032864 105033167 -12829460 - AluSg1 SINE Alu -12 297 1 2144 142 0 0 chr9 105033186 105033495 -12829132 - AluSx SINE Alu -2 310 2 219 211 156 44 chr9 105033506 105033596 -12829031 - MIR SINE MIR -67 141 42 2155 123 0 40 chr9 105034046 105034370 -12828257 + AluSx SINE Alu 1 311 -1 226 69 0 0 chr9 105034475 105034504 -12828123 - LTR6A LTR ERV1 -463 101 73 2493 66 0 3 chr9 105035072 105035374 -12827253 - AluY SINE Alu -10 301 1 1900 99 58 31 chr9 105035709 105036003 -12826624 - AluSc SINE Alu -7 302 1 2093 148 0 0 chr9 105036116 105036419 -12826208 - AluJb SINE Alu -9 303 1 2263 93 10 0 chr9 105036454 105036754 -12825873 - AluSx SINE Alu -9 303 1 2560 44 0 0 chr9 105036862 105037155 -12825472 - AluY SINE Alu -18 293 1 1765 129 44 34 chr9 105037689 105037983 -12824644 + AluSx SINE Alu 5 301 -11 2387 96 0 0 chr9 105038014 105038326 -12824301 + AluSx SINE Alu 1 312 0 22 56 0 0 chr9 105038465 105038501 -12824126 + AT_rich Low_complexity Low_complexity 1 36 0 1722 169 7 14 chr9 105038513 105038797 -12823830 - AluJo SINE Alu -30 282 1 1884 104 8 4 chr9 105039285 105039544 -12823083 - AluSp SINE Alu -40 273 14 2369 86 0 0 chr9 105039555 105039847 -12822780 - AluSx SINE Alu -19 293 2 979 89 0 0 chr9 105039889 105040012 -12822615 + AluSg/x SINE Alu 175 297 -15 1490 151 0 4 chr9 105040281 105040506 -12822121 + AluSg/x SINE Alu 77 300 -12 2327 110 10 0 chr9 105040516 105040826 -12821801 + AluSp SINE Alu 1 313 0 1496 192 32 18 chr9 105040830 105041168 -12821459 + L1M4 LINE L1 1126 1468 -5074 1655 126 0 9 chr9 105041226 105041457 -12821170 - AluSx SINE Alu -83 229 1 1340 172 136 0 chr9 105041805 105041940 -12820687 + AluJo SINE Alu 1 169 -133 1703 175 25 0 chr9 105041940 105042064 -12820563 + AluJo SINE Alu 3 122 -190 2207 132 0 13 chr9 105042064 105042395 -12820232 + AluSx SINE Alu 1 312 0 1703 175 25 0 chr9 105042395 105042550 -12820077 + AluJo SINE Alu 122 289 -23 22 0 0 0 chr9 105042550 105042572 -12820055 + AT_rich Low_complexity Low_complexity 1 22 0 1080 126 40 0 chr9 105042582 105042733 -12819894 - AluSg/x SINE Alu -19 293 137 2110 118 24 10 chr9 105042772 105043068 -12819559 - AluSx SINE Alu -12 300 1 543 128 160 0 chr9 105043186 105043311 -12819316 - L1MA8 LINE L1 0 6291 6147 235 363 0 0 chr9 105043367 105043447 -12819180 + MIR SINE MIR 35 114 -94 28 48 0 0 chr9 105043717 105043759 -12818868 + AT_rich Low_complexity Low_complexity 1 42 0 2356 92 0 10 chr9 105043782 105044096 -12818531 - AluY SINE Alu 0 311 1 568 313 39 22 chr9 105044145 105044324 -12818303 - MIR SINE MIR -50 212 31 2548 48 3 0 chr9 105045242 105045534 -12817093 - AluY SINE Alu -18 293 1 269 286 53 26 chr9 105045746 105045935 -12816692 - L1ME4a LINE L1 -214 5907 5714 2191 117 10 3 chr9 105045941 105046249 -12816378 + AluSx SINE Alu 1 310 -2 1164 144 6 0 chr9 105046276 105046443 -12816184 - AluSp SINE Alu -12 301 134 2351 89 0 0 chr9 105046443 105046774 -12815853 - AluY SINE Alu 0 311 2 284 200 57 0 chr9 105046780 105046850 -12815777 - L1ME4a LINE L1 -451 5670 5597 24 91 0 0 chr9 105047278 105047344 -12815283 + AT_rich Low_complexity Low_complexity 1 66 0 2289 82 7 0 chr9 105047480 105047772 -12814855 + AluSp SINE Alu 2 295 -18 2229 126 0 0 chr9 105048113 105048406 -12814221 + AluSx SINE Alu 1 293 -19 2526 60 7 3 chr9 105048410 105048711 -12813916 + AluY SINE Alu 1 302 -9 213 261 31 31 chr9 105048742 105048807 -12813820 + MER5B DNA MER1_type 13 77 -101 1226 203 30 0 chr9 105048961 105049193 -12813434 + Tigger7 DNA MER2_type 2 240 -493 301 238 0 0 chr9 105049204 105049267 -12813360 + Tigger7 DNA MER2_type 2392 2454 -37 922 48 0 0 chr9 105049407 105049512 -12813115 + AluSp SINE Alu 1 105 -208 469 171 0 34 chr9 105050276 105050364 -12812263 - AluJo SINE Alu -178 134 50 263 245 53 21 chr9 105050384 105050478 -12812149 - L1ME1 LINE L1 -5 6161 6065 759 122 0 82 chr9 105050517 105050664 -12811963 - L1PA16 LINE L1 0 6166 6032 2382 103 0 3 chr9 105050664 105050975 -12811652 - AluSx SINE Alu -2 310 1 460 250 69 49 chr9 105050983 105051187 -12811440 - L1MC5 LINE L1 -48 7913 7706 6172 31 14 11 chr9 105051364 105052282 -12810345 - SVA Other Other -1096 1386 57 234 0 0 0 chr9 105052282 105052308 -12810319 + (GGGAGA)n Simple_repeat Simple_repeat 1 26 0 1821 129 33 60 chr9 105052848 105053150 -12809477 - AluSq SINE Alu -19 294 1 2090 141 7 0 chr9 105053486 105053785 -12808842 - AluSx SINE Alu -11 301 1 2276 112 0 0 chr9 105054373 105054668 -12807959 - AluSx SINE Alu -17 295 1 592 303 42 21 chr9 105055845 105056182 -12806445 + L1ME4a LINE L1 5512 5855 -266 2129 92 3 33 chr9 105056242 105056546 -12806081 - AluSg SINE Alu -15 295 1 2549 78 3 0 chr9 105056645 105056952 -12805675 - AluSp SINE Alu -4 309 2 1162 145 61 37 chr9 105056995 105057209 -12805418 - MER20 DNA MER1_type 0 219 1 1653 200 76 69 chr9 105057217 105057783 -12804844 + Charlie1a DNA MER1_type 1 570 -885 1126 135 0 39 chr9 105057784 105057962 -12804665 + AluJb SINE Alu 1 171 -141 798 202 21 26 chr9 105057973 105058166 -12804461 + Charlie1a DNA MER1_type 556 747 -708 * 1636 156 54 18 chr9 105058161 105058551 -12804076 + Charlie1a DNA MER1_type 895 1298 -157 2405 82 0 3 chr9 105058562 105058856 -12803771 + AluSc SINE Alu 1 293 -16 274 258 30 0 chr9 105058857 105058923 -12803704 - MER57A LTR ERV1 -70 333 266 * 589 129 152 29 chr9 105058895 105059037 -12803590 + Charlie1a DNA MER1_type 1264 1432 -1329 1992 127 38 10 chr9 105059037 105059328 -12803299 + AluJo SINE Alu 1 299 -13 589 129 152 29 chr9 105059328 105059356 -12803271 + Charlie1a DNA MER1_type 1432 1455 0 204 67 0 0 chr9 105059457 105059487 -12803140 + (A)n Simple_repeat Simple_repeat 1 30 0 27 0 0 0 chr9 105059651 105059678 -12802949 + AT_rich Low_complexity Low_complexity 1 27 0 857 161 0 7 chr9 105059678 105059815 -12802812 - AluJo SINE Alu -176 136 1 2126 111 3 10 chr9 105061045 105061342 -12801285 - AluSc SINE Alu -14 295 1 3008 244 180 11 chr9 105061417 105062097 -12800530 - L1MC4 LINE L1 -154 7888 7324 261 0 0 0 chr9 105062097 105062126 -12800501 + (TG)n Simple_repeat Simple_repeat 2 30 0 1592 174 6 52 chr9 105062133 105062460 -12800167 - AluJb SINE Alu 0 312 1 3008 244 180 11 chr9 105062460 105062982 -12799645 - L1MC4 LINE L1 -722 7320 6473 2379 101 0 0 chr9 105063182 105063488 -12799139 - AluSx SINE Alu -6 306 1 429 296 58 47 chr9 105063514 105063771 -12798856 + MIR SINE MIR 3 262 0 286 315 63 9 chr9 105063821 105063932 -12798695 - L2 LINE L2 0 3313 3197 1442 138 4 30 chr9 105064050 105064281 -12798346 + AluJb SINE Alu 87 311 -1 1537 105 17 50 chr9 105066243 105066481 -12796146 - MER30 DNA MER1_type 0 230 1 21 57 0 0 chr9 105066550 105066585 -12796042 + AT_rich Low_complexity Low_complexity 1 35 0 300 280 93 8 chr9 105066823 105066941 -12795686 - L2 LINE L2 -4 3309 3182 413 314 137 29 chr9 105067401 105067678 -12794949 - L1ME4a LINE L1 -201 5983 5677 802 228 25 12 chr9 105067828 105067990 -12794637 + FRAM SINE Alu 2 165 -1 1126 167 4 134 chr9 105068154 105068336 -12794291 + MER8 DNA MER2_type 1 137 -102 2268 125 3 0 chr9 105068336 105068647 -12793980 - AluSx SINE Alu 0 312 1 1126 167 4 134 chr9 105068647 105068739 -12793888 + MER8 DNA MER2_type 137 239 0 694 272 12 0 chr9 105068808 105068977 -12793650 + MIR SINE MIR 92 262 0 195 259 0 0 chr9 105069008 105069066 -12793561 + (TATATG)n Simple_repeat Simple_repeat 2 59 0 2031 129 10 33 chr9 105069392 105069694 -12792933 + AluJb SINE Alu 1 295 -17 290 85 0 21 chr9 105069866 105069913 -12792714 + (TGAA)n Simple_repeat Simple_repeat 1 46 0 256 269 120 9 chr9 105071072 105071180 -12791447 - L2 LINE L2 -302 3011 2892 27 73 0 0 chr9 105071256 105071311 -12791316 + AT_rich Low_complexity Low_complexity 1 55 0 807 159 53 0 chr9 105071317 105071449 -12791178 - AluJb SINE Alu -173 139 1 562 222 41 86 chr9 105071454 105071533 -12791094 - MIR SINE MIR -67 195 114 2268 102 0 3 chr9 105071533 105071827 -12790800 + AluSx SINE Alu 10 302 -10 562 222 41 86 chr9 105071827 105071947 -12790680 - MIR SINE MIR -148 114 6 356 239 260 38 chr9 105072394 105072733 -12789894 + L2 LINE L2 2372 2785 -529 832 173 0 0 chr9 105072733 105072866 -12789761 + FLAM_A SINE Alu 1 133 0 2252 107 0 3 chr9 105073024 105073315 -12789312 + AluSg SINE Alu 1 290 -20 213 261 0 46 chr9 105073505 105073570 -12789057 + L2 LINE L2 3251 3312 -1 2176 94 16 29 chr9 105073844 105074188 -12788439 - AluSq SINE Alu 0 313 1 361 306 125 19 chr9 105074776 105074936 -12787691 - MIR SINE MIR -33 229 53 213 279 63 25 chr9 105074939 105075018 -12787609 - MIR SINE MIR -73 189 108 188 281 83 21 chr9 105075873 105075969 -12786658 - MIR SINE MIR -80 182 81 284 196 114 43 chr9 105076158 105076274 -12786353 - MLT1K LTR MaLR -341 247 153 725 75 75 0 chr9 105076349 105076623 -12786004 + (TG)n Simple_repeat Simple_repeat 1 294 0 742 80 53 7 chr9 105076666 105076966 -12785661 + (TG)n Simple_repeat Simple_repeat 1 314 0 2562 71 3 0 chr9 105077400 105077709 -12784918 + AluSx SINE Alu 3 312 0 450 201 121 46 chr9 105079282 105079324 -12783303 - MIR SINE MIR -60 148 111 1264 204 145 0 chr9 105079324 105079628 -12782999 - MER7A DNA MER2_type 0 346 1 450 201 121 46 chr9 105079628 105079764 -12782863 - MIR SINE MIR -97 111 11 418 219 112 107 chr9 105080183 105080425 -12782202 - L2 LINE L2 -121 3151 2909 451 209 108 16 chr9 105080435 105080564 -12782063 + MIR SINE MIR 5 145 -117 351 270 83 54 chr9 105080631 105080835 -12781792 - L2 LINE L2 -409 2905 2696 309 234 53 21 chr9 105081609 105081703 -12780924 + MIR SINE MIR 51 147 -61 1981 139 0 49 chr9 105081709 105081855 -12780772 + AluSx SINE Alu 1 153 -159 2321 117 0 0 chr9 105081855 105082154 -12780473 + AluSq SINE Alu 1 299 -14 1981 139 0 49 chr9 105082154 105082331 -12780296 + AluSx SINE Alu 153 308 -4 714 231 29 29 chr9 105082697 105082772 -12779855 - MER91B DNA MER1_type -16 174 100 2557 68 3 0 chr9 105082772 105083082 -12779545 + AluY SINE Alu 1 311 0 714 231 29 29 chr9 105083082 105083179 -12779448 - MER91B DNA MER1_type -89 101 2 2174 117 10 7 chr9 105083587 105083887 -12778740 + AluSx SINE Alu 1 301 -11 186 214 0 0 chr9 105084205 105084247 -12778380 - MIR SINE MIR -134 128 87 505 0 31 0 chr9 105084835 105084900 -12777727 + (TTTTA)n Simple_repeat Simple_repeat 4 70 0 718 149 0 25 chr9 105084900 105085021 -12777606 - FLAM_C SINE Alu -24 119 2 382 306 73 8 chr9 105085028 105085152 -12777475 - MIR SINE MIR -118 144 13 278 284 27 54 chr9 105085530 105085678 -12776949 - MIR3 SINE MIR -24 184 41 1676 153 31 4 chr9 105085892 105086153 -12776474 + AluJo SINE Alu 13 280 -32 261 0 0 0 chr9 105086159 105086188 -12776439 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 240 294 88 20 chr9 105086205 105086307 -12776320 + MIR SINE MIR 38 146 -62 500 271 192 32 chr9 105086361 105086804 -12775823 - LTR33A LTR ERVL 0 523 10 234 194 69 42 chr9 105086912 105086984 -12775643 - MLT1K LTR MaLR -2 586 513 334 327 45 0 chr9 105087405 105087515 -12775112 - L1ME4a LINE L1 -176 5945 5831 2271 96 3 3 chr9 105087524 105087817 -12774810 + AluSx SINE Alu 2 294 -18 353 261 159 54 chr9 105087944 105088220 -12774407 - L1MC5 LINE L1 -30 7931 7627 255 244 67 22 chr9 105088224 105088314 -12774313 - L1MC4 LINE L1 -138 7904 7811 1130 181 25 79 chr9 105089296 105089639 -12772988 + L1MB3 LINE L1 5839 6155 -28 2068 138 6 6 chr9 105089685 105089997 -12772630 - AluSx SINE Alu 0 312 1 1664 149 22 0 chr9 105090380 105090648 -12771979 + AluJo SINE Alu 6 279 -33 507 230 40 0 chr9 105090814 105090940 -12771687 - LTR16C LTR ERVL -14 477 347 1964 97 10 45 chr9 105091077 105091211 -12771416 + AluSx SINE Alu 2 139 -173 2364 101 10 0 chr9 105091211 105091519 -12771108 + AluSq SINE Alu 1 311 -2 1964 97 10 45 chr9 105091519 105091672 -12770955 + AluSx SINE Alu 139 279 -33 464 301 21 28 chr9 105091746 105091889 -12770738 - MIR SINE MIR -120 142 1 341 219 0 24 chr9 105093376 105093458 -12769169 + MIR SINE MIR 65 144 -118 373 188 0 16 chr9 105093762 105093826 -12768801 - MER81 DNA DNA -51 63 1 243 100 25 0 chr9 105093855 105093895 -12768732 + MER81 DNA DNA 73 113 -1 291 303 11 0 chr9 105094438 105094527 -12768100 + MIR SINE MIR 102 191 -71 275 232 14 0 chr9 105095457 105095526 -12767101 + (CA)n Simple_repeat Simple_repeat 2 71 0 185 0 40 0 chr9 105095561 105095586 -12767041 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 1750 139 0 47 chr9 105095589 105095890 -12766737 - AluJo SINE Alu -25 287 1 1926 81 0 0 chr9 105096407 105096654 -12765973 - AluSq SINE Alu -66 247 1 249 192 0 0 chr9 105096957 105097009 -12765618 - MLT1C LTR MaLR -25 442 391 339 262 14 28 chr9 105097010 105097155 -12765472 + AluSq/x SINE Alu 1 143 -159 336 230 51 112 chr9 105097332 105097510 -12765117 - L1MC/D LINE L1 -2050 5758 5592 373 93 0 0 chr9 105097513 105097567 -12765060 - Alu SINE Alu 0 300 247 2107 102 7 0 chr9 105097578 105097871 -12764756 - AluSp SINE Alu -18 295 1 1810 149 35 0 chr9 105097873 105098040 -12764587 - AluSx SINE Alu -14 298 115 186 43 0 0 chr9 105098040 105098063 -12764564 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1810 149 35 0 chr9 105098063 105098183 -12764444 - AluSx SINE Alu -197 115 1 2025 116 0 3 chr9 105098185 105098477 -12764150 - AluSx SINE Alu -16 296 6 1135 110 5 37 chr9 105098482 105098673 -12763954 + L1MA2 LINE L1 6120 6304 0 22 0 0 0 chr9 105098693 105098715 -12763912 + AT_rich Low_complexity Low_complexity 1 22 0 876 162 50 28 chr9 105098735 105098914 -12763713 + AluJb SINE Alu 122 304 -8 2138 104 0 10 chr9 105099114 105099421 -12763206 + AluSx SINE Alu 1 304 -8 1022 123 7 7 chr9 105099899 105100054 -12762573 - AluSx SINE Alu -157 155 1 263 303 22 11 chr9 105100465 105100554 -12762073 - L2 LINE L2 -3 3269 3180 947 257 95 5 chr9 105100665 105101177 -12761450 + MLT2E LTR ERVL 24 628 0 349 200 27 13 chr9 105101431 105101506 -12761121 + ERVL-E LTR ERVL 319 394 -5370 2057 109 0 0 chr9 105101509 105101844 -12760783 - AluSx SINE Alu 0 335 1 1867 111 0 0 chr9 105101993 105102255 -12760372 - AluSx SINE Alu -1 311 50 365 57 0 19 chr9 105102526 105102579 -12760048 + (CATTC)n Simple_repeat Simple_repeat 5 56 0 2049 121 3 0 chr9 105102768 105103058 -12759569 - AluSx SINE Alu -17 295 5 21 36 0 0 chr9 105103122 105103150 -12759477 + AT_rich Low_complexity Low_complexity 1 28 0 1828 145 3 3 chr9 105103152 105103434 -12759193 + AluJo SINE Alu 1 282 -30 186 43 0 0 chr9 105103439 105103462 -12759165 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 2194 68 11 0 chr9 105103608 105103910 -12758717 + AluSp SINE Alu 2 306 0 741 209 69 16 chr9 105104173 105104432 -12758195 - L1MD3 LINE L1 -2 7993 6093 24 32 0 0 chr9 105104445 105104476 -12758151 + AT_rich Low_complexity Low_complexity 1 31 0 1811 124 10 35 chr9 105104477 105104767 -12757860 - AluJb SINE Alu -29 283 1 2184 88 3 3 chr9 105105140 105105435 -12757192 + AluSx SINE Alu 1 295 -17 246 289 36 12 chr9 105105448 105105531 -12757096 - L2 LINE L2 -45 3227 3143 677 148 8 8 chr9 105105848 105105976 -12756651 + L1MA8 LINE L1 5073 5200 -946 1168 152 0 20 chr9 105105976 105106173 -12756454 + AluJo SINE Alu 1 193 -119 3533 139 27 8 chr9 105106175 105106770 -12755857 + L1MA8 LINE L1 5673 6278 -13 2234 107 3 0 chr9 105106770 105107078 -12755549 - AluSx SINE Alu -3 309 1 789 222 30 6 chr9 105107530 105107647 -12754980 - AluJo SINE Alu -63 249 125 2159 115 0 13 chr9 105107647 105107982 -12754645 - AluSx SINE Alu 0 312 1 789 222 30 6 chr9 105107982 105108031 -12754596 - AluJo SINE Alu -187 125 79 1114 171 14 9 chr9 105108032 105108242 -12754385 - AluJo SINE Alu -101 211 1 1544 126 0 9 chr9 105108590 105108821 -12753806 + AluSx SINE Alu 1 229 -83 1570 170 43 87 chr9 105108879 105109220 -12753407 - L1M4 LINE L1 -5074 1468 1114 2200 110 10 0 chr9 105109220 105109530 -12753097 - AluSp SINE Alu 0 313 1 2178 107 0 0 chr9 105109540 105109838 -12752789 - AluSg SINE Alu -12 298 1 1570 170 43 87 chr9 105109838 105109945 -12752682 - L1M4 LINE L1 -5437 1105 1029 4861 46 36 88 chr9 105109946 105110665 -12751962 + L1PA7 LINE L1 5467 6148 -6 200 299 161 0 chr9 105110951 105111038 -12751589 + MIR SINE MIR 36 136 -72 2230 92 0 3 chr9 105111270 105111565 -12751062 - AluSx SINE Alu -18 294 1 1972 132 7 7 chr9 105111751 105112055 -12750572 - AluJo SINE Alu -6 306 3 556 214 21 14 chr9 105112679 105112819 -12749808 - L1PA16 LINE L1 -6 6160 6020 745 118 18 0 chr9 105113067 105113177 -12749450 - AluSg/x SINE Alu -29 281 170 24 91 0 0 chr9 105114370 105114436 -12748191 + AT_rich Low_complexity Low_complexity 1 66 0 298 200 57 0 chr9 105114878 105114948 -12747679 + L1ME LINE L1 5597 5670 -451 2213 86 3 0 chr9 105114954 105115245 -12747382 + AluY SINE Alu 2 293 -18 1755 146 27 7 chr9 105117284 105117578 -12745049 + AluSq SINE Alu 1 300 -13 1028 160 0 27 chr9 105117856 105118043 -12744584 - AluJb SINE Alu -50 262 81 605 130 0 30 chr9 105118126 105118226 -12744401 - AluJo SINE Alu -178 134 38 1854 152 3 0 chr9 105118289 105118578 -12744049 - AluSx SINE Alu -22 290 1 369 340 52 21 chr9 105118666 105118857 -12743770 + MIR3 SINE MIR 10 206 -2 932 123 0 0 chr9 105119483 105119613 -12743014 + FLAM_C SINE Alu 2 131 -2 313 206 82 0 chr9 105120209 105120282 -12742345 + MER116 DNA Mariner 2 80 0 2265 96 79 20 chr9 105120770 105121113 -12741514 - THE1B LTR MaLR 0 364 2 11916 82 12 19 chr9 105121114 105121502 -12741125 - THE1B-int LTR MaLR 0 1580 1191 2075 125 3 3 chr9 105121502 105121806 -12740821 - AluSq SINE Alu -9 304 1 11916 82 12 19 chr9 105121806 105122596 -12740031 - THE1B-int LTR MaLR -389 1191 415 2093 113 3 3 chr9 105122596 105122889 -12739738 + AluSq SINE Alu 7 299 -14 11916 82 12 19 chr9 105122889 105123301 -12739326 - THE1B-int LTR MaLR -1165 415 1 1804 124 130 27 chr9 105123301 105123631 -12738996 - THE1B LTR MaLR 0 364 1 2209 84 0 20 chr9 105124883 105125180 -12737447 - AluSc SINE Alu -18 291 1 32 57 0 0 chr9 105125358 105125411 -12737216 + AT_rich Low_complexity Low_complexity 1 53 0 233 195 0 0 chr9 105125826 105125867 -12736760 + L1ME LINE L1 5534 5574 -547 345 327 27 0 chr9 105125868 105125978 -12736649 + L2 LINE L2 2943 3055 -217 1078 138 56 15 chr9 105126062 105126258 -12736369 - MER20 DNA MER1_type 0 219 16 927 164 0 55 chr9 105126260 105126443 -12736184 - AluJb SINE Alu -4 308 136 2057 124 0 10 chr9 105126445 105126751 -12735876 - AluSx SINE Alu -9 303 1 707 210 7 7 chr9 105126822 105126960 -12735667 + MIR SINE MIR 2 139 -123 325 332 84 25 chr9 105127327 105127529 -12735098 + L2 LINE L2 3058 3271 -1 1776 156 3 0 chr9 105127534 105127822 -12734805 + AluSx SINE Alu 1 289 -23 291 109 0 0 chr9 105127872 105127918 -12734709 + L1MB8 LINE L1 6133 6178 0 1919 139 0 3 chr9 105127928 105128223 -12734404 + AluSx SINE Alu 1 294 -18 189 0 0 0 chr9 105128223 105128244 -12734383 + (CA)n Simple_repeat Simple_repeat 2 22 0 2047 122 7 0 chr9 105128347 105128642 -12733985 - AluSx SINE Alu -15 297 1 351 269 126 0 chr9 105129129 105129248 -12733379 + MIR SINE MIR 20 153 -55 1797 150 0 23 chr9 105131104 105131404 -12731223 - AluSx SINE Alu -19 293 1 1881 122 50 0 chr9 105131493 105131771 -12730856 + AluSg SINE Alu 1 292 -18 206 200 31 46 chr9 105131771 105131826 -12730801 + L2 LINE L2 3258 3313 0 207 276 268 8 chr9 105132545 105132672 -12729955 - MIR3 SINE MIR -35 173 14 24 0 0 0 chr9 105133484 105133508 -12729119 + AT_rich Low_complexity Low_complexity 1 24 0 2008 96 7 7 chr9 105134445 105134772 -12727855 - AluSc SINE Alu 0 327 1 22 0 0 0 chr9 105135547 105135569 -12727058 + AT_rich Low_complexity Low_complexity 1 22 0 1857 148 0 0 chr9 105135878 105136168 -12726459 - AluSx SINE Alu -22 290 1 1689 146 42 0 chr9 105137630 105137917 -12724710 - AluJb SINE Alu -11 301 3 2081 99 17 3 chr9 105138202 105138496 -12724131 - AluSp SINE Alu -15 298 1 216 0 0 0 chr9 105138883 105138907 -12723720 + (A)n Simple_repeat Simple_repeat 1 24 0 1518 142 38 49 chr9 105138931 105139219 -12723408 + AluJo SINE Alu 13 297 -15 222 260 91 0 chr9 105139393 105139470 -12723157 + MER5A DNA MER1_type 57 140 -49 204 279 66 0 chr9 105139539 105139600 -12723027 + MER5A DNA MER1_type 100 164 -25 1700 158 7 24 chr9 105139611 105139909 -12722718 - AluJo SINE Alu -19 293 1 337 305 43 14 chr9 105139989 105140130 -12722497 + MER5A DNA MER1_type 45 189 0 2187 96 3 13 chr9 105140452 105140765 -12721862 - AluSx SINE Alu -2 310 1 240 242 15 45 chr9 105141334 105141400 -12721227 - MLT1L LTR MaLR -420 195 132 203 304 0 0 chr9 105141480 105141526 -12721101 - MIR SINE MIR -11 251 206 309 191 29 15 chr9 105141564 105141632 -12720995 + MLT1J1 LTR MaLR 245 313 -133 2152 116 0 0 chr9 105141655 105141957 -12720670 - AluSx SINE Alu -10 302 1 400 161 0 81 chr9 105142008 105142095 -12720532 - MER116 DNA Mariner 0 80 1 418 315 72 9 chr9 105142104 105142326 -12720301 - L1MC/D LINE L1 -1984 5824 5589 1782 146 0 51 chr9 105142326 105142642 -12719985 + AluJo SINE Alu 3 302 -10 1531 147 3 102 chr9 105142981 105143315 -12719312 - AluJb SINE Alu 0 302 2 34 0 0 0 chr9 105143477 105143511 -12719116 + AT_rich Low_complexity Low_complexity 1 34 0 552 242 37 42 chr9 105143557 105143747 -12718880 - AluJo SINE Alu -21 291 103 311 107 0 0 chr9 105143962 105144018 -12718609 - AluSx SINE Alu 0 300 245 1116 113 101 6 chr9 105144018 105144186 -12718441 - AluSx SINE Alu -128 184 1 849 118 15 7 chr9 105144186 105144320 -12718307 - AluSg/x SINE Alu -6 306 172 266 169 39 26 chr9 105144930 105145007 -12717620 - MER74B LTR ERVL 0 622 545 706 147 7 67 chr9 105145019 105145169 -12717458 + FLAM_C SINE Alu 2 142 -1 1602 201 61 110 chr9 105145173 105145699 -12716928 - MER74B LTR ERVL -75 547 48 332 228 47 111 chr9 105146064 105146279 -12716348 + MER20 DNA MER1_type 11 214 -5 191 275 69 76 chr9 105146353 105146484 -12716143 - MIR3 SINE MIR -44 164 35 288 281 11 0 chr9 105146974 105147063 -12715564 - L2 LINE L2 -19 3253 3164 1669 156 11 119 chr9 105147105 105147221 -12715406 + MLT1B LTR MaLR 1 128 -262 1925 137 3 20 chr9 105147221 105147513 -12715114 - AluJb SINE Alu -24 288 2 1669 156 11 119 chr9 105147513 105147833 -12714794 + MLT1B LTR MaLR 128 390 0 822 141 92 18 chr9 105147899 105148062 -12714565 - MER53 DNA DNA -12 177 3 365 143 22 44 chr9 105148513 105148604 -12714023 + U5 snRNA snRNA 7 95 -21 1187 135 0 17 chr9 105149243 105149421 -12713206 + AluSg/x SINE Alu 137 311 -1 563 238 52 17 chr9 105149592 105149764 -12712863 - MIR SINE MIR -65 197 20 207 88 0 0 chr9 105150172 105150206 -12712421 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 345 220 18 46 chr9 105150212 105150321 -12712306 - L2 LINE L2 -31 3241 3136 261 196 0 0 chr9 105150434 105150498 -12712129 - MIR SINE MIR -83 125 61 305 288 81 0 chr9 105150646 105150757 -12711870 - MER103 DNA DNA -45 121 2 329 272 48 0 chr9 105151452 105151555 -12711072 + MIR SINE MIR 53 160 -102 391 239 12 0 chr9 105151912 105152079 -12710548 + (CA)n Simple_repeat Simple_repeat 1 169 0 185 266 101 28 chr9 105152964 105153073 -12709554 + L2 LINE L2 3150 3266 -6 270 317 98 16 chr9 105153499 105153622 -12709005 - MIR SINE MIR -41 221 89 1829 132 0 45 chr9 105153970 105154259 -12708368 + AluJb SINE Alu 31 306 -6 210 313 122 0 chr9 105154815 105154930 -12707697 - MIR SINE MIR -118 144 16 318 259 178 7 chr9 105155588 105155723 -12706904 - MIR SINE MIR -25 237 80 350 284 7 54 chr9 105156052 105156200 -12706427 - MIR SINE MIR -91 171 31 250 194 0 90 chr9 105156952 105157019 -12705608 + MIR SINE MIR 87 147 -115 2401 104 0 3 chr9 105157129 105157438 -12705189 + AluSg SINE Alu 1 308 -2 226 274 109 45 chr9 105157729 105157930 -12704697 + MLT1I LTR MaLR 2 215 -194 378 253 32 0 chr9 105158058 105158153 -12704474 - MIR SINE MIR -80 182 85 211 340 0 19 chr9 105158851 105158954 -12703673 + L3 LINE CR1 1371 1471 -106 248 309 43 0 chr9 105159122 105159216 -12703411 - MIR3 SINE MIR -30 178 81 182 254 161 25 chr9 105161928 105162046 -12700581 - MIR3 SINE MIR -68 140 7 235 243 27 0 chr9 105162069 105162143 -12700484 + MIR SINE MIR 60 135 -127 439 297 56 11 chr9 105162928 105163128 -12699499 - MIR SINE MIR -39 223 15 340 283 220 11 chr9 105164047 105164238 -12698389 + MIR SINE MIR 20 250 -12 2290 100 7 10 chr9 105164581 105164891 -12697736 + AluSx SINE Alu 1 309 -3 290 364 39 10 chr9 105165702 105165908 -12696719 + MIR SINE MIR 48 259 -3 425 215 27 60 chr9 105165967 105166116 -12696511 - MIR SINE MIR -56 206 63 367 271 8 25 chr9 105166233 105166351 -12696276 + MER5A DNA MER1_type 1 116 -73 281 300 159 50 chr9 105166498 105166775 -12695852 + L2 LINE L2 2954 3260 -12 189 345 35 26 chr9 105168109 105168225 -12694402 + L2 LINE L2 2932 3048 -224 2347 110 0 0 chr9 105171459 105171760 -12690867 + AluSx SINE Alu 2 302 -10 269 327 82 12 chr9 105171893 105172039 -12690588 + MIR SINE MIR 15 167 -41 1239 99 0 37 chr9 105172641 105172832 -12689795 - AluSg/x SINE Alu 0 312 129 270 313 57 30 chr9 105173139 105173369 -12689258 - L1ME4a LINE L1 -196 5925 5690 189 339 184 29 chr9 105173878 105174259 -12688368 + L2 LINE L2 1838 2277 -1037 270 308 40 76 chr9 105174475 105174544 -12688083 + L2 LINE L2 2620 2690 -624 2409 84 0 0 chr9 105174544 105174840 -12687787 - AluSx SINE Alu -11 301 6 1987 149 3 0 chr9 105174846 105175134 -12687493 - AluSx SINE Alu -23 289 1 270 308 40 76 chr9 105175134 105175255 -12687372 + L2 LINE L2 2695 2810 -504 651 150 53 0 chr9 105175255 105175368 -12687259 - Charlie1 DNA MER1_type 0 2761 2643 872 132 162 0 chr9 105175369 105175505 -12687122 + AluSg SINE Alu 1 158 -152 4037 170 67 14 chr9 105175623 105175698 -12686929 - Charlie1 DNA MER1_type -167 2594 2524 1990 125 3 31 chr9 105175698 105176009 -12686618 - AluSx SINE Alu 0 308 6 4037 170 67 14 chr9 105176009 105176809 -12685818 - Charlie1 DNA MER1_type -237 2524 1671 832 132 0 66 chr9 105177552 105177704 -12684923 + FLAM_C SINE Alu 1 142 -1 377 219 132 18 chr9 105177782 105177896 -12684731 + MIR SINE MIR 65 191 -71 218 218 77 51 chr9 105177929 105178007 -12684620 + MIR SINE MIR 146 225 -37 1669 191 46 30 chr9 105178055 105178426 -12684201 - MER58D DNA MER1_type -9 377 1 1153 284 52 11 chr9 105178490 105178948 -12683679 - L1MEc LINE L1 -4603 1793 1317 254 281 158 22 chr9 105178951 105179090 -12683537 - L1MEc LINE L1 -4985 1230 1073 1291 223 145 20 chr9 105179094 105179595 -12683032 + MLT1F1 LTR MaLR 10 567 0 2432 97 0 0 chr9 105179640 105179938 -12682689 - AluSx SINE Alu -14 298 1 1799 284 133 6 chr9 105179938 105180840 -12681787 - L1MEc LINE L1 -5319 1077 61 7504 50 2 33 chr9 105180867 105182456 -12680171 - SVA Other Other -799 1384 1 851 130 0 43 chr9 105186666 105186804 -12675823 + FLAM_A SINE Alu 2 133 0 209 250 62 0 chr9 105188200 105188264 -12674363 - L2 LINE L2 -5 3267 3200 697 192 0 0 chr9 105188681 105188801 -12673826 + FLAM_C SINE Alu 2 121 -22 313 270 135 12 chr9 105189598 105189761 -12672866 - MER5A DNA MER1_type -5 184 2 23 33 0 0 chr9 105192047 105192077 -12670550 + AT_rich Low_complexity Low_complexity 1 30 0 804 279 28 4 chr9 105194488 105194742 -12667885 - MIR SINE MIR -1 261 2 220 286 9 29 chr9 105194775 105194880 -12667747 - MIR SINE MIR -90 118 16 453 288 90 9 chr9 105196396 105196608 -12666019 + MIR SINE MIR 18 246 -16 181 242 0 32 chr9 105197038 105197100 -12665527 + MIR SINE MIR 84 143 -65 500 321 31 0 chr9 105197640 105197802 -12664825 - MIR3 SINE MIR -12 196 30 452 321 15 15 chr9 105199384 105199580 -12663047 - MER117 DNA MER1_type 0 197 2 389 354 13 0 chr9 105200627 105200785 -12661842 + MER117 DNA MER1_type 1 160 -37 1796 174 3 7 chr9 105200924 105201211 -12661416 - AluJo SINE Alu -26 286 1 197 280 160 0 chr9 105201404 105201479 -12661148 + MIR SINE MIR 106 192 -70 378 284 151 32 chr9 105201553 105201771 -12660856 + MIR SINE MIR 4 247 -15 2488 84 0 0 chr9 105201879 105202178 -12660449 + AluSp SINE Alu 1 299 -14 2502 77 0 0 chr9 105203273 105203584 -12659043 + AluY SINE Alu 1 311 0 460 256 23 15 chr9 105203634 105203767 -12658860 - MIR SINE MIR -109 153 20 1968 155 3 0 chr9 105204008 105204304 -12658323 - AluJb SINE Alu -15 297 1 2466 86 3 6 chr9 105204431 105204745 -12657882 + AluSq SINE Alu 1 313 0 887 181 68 68 chr9 105204753 105205045 -12657582 - L1ME3A LINE L1 -27 6143 5852 1050 142 95 5 chr9 105205167 105205357 -12657270 + MER6B DNA MER2_type 4 210 0 302 313 161 5 chr9 105205445 105205669 -12656958 - MIR SINE MIR -2 260 2 516 321 41 9 chr9 105205710 105205928 -12656699 - MIR SINE MIR -37 225 1 507 267 110 5 chr9 105206248 105206439 -12656188 + MIR SINE MIR 38 248 -14 276 30 0 0 chr9 105206447 105206480 -12656147 + (ATG)n Simple_repeat Simple_repeat 1 33 0 271 330 0 0 chr9 105207240 105207337 -12655290 + L3b LINE CR1 1181 1277 -306 323 317 30 0 chr9 105207628 105207761 -12654866 - MIR SINE MIR -60 202 67 202 247 27 68 chr9 105207915 105207988 -12654639 - L2 LINE L2 0 3272 3203 209 294 56 56 chr9 105208167 105208310 -12654317 + L2 LINE L2 2911 3053 -219 388 250 0 10 chr9 105208352 105208452 -12654175 + MIR SINE MIR 28 126 -136 330 250 216 0 chr9 105208684 105208832 -12653795 - MIR SINE MIR 0 262 83 408 276 73 77 chr9 105209295 105209676 -12652951 + L2 LINE L2 2891 3268 -4 2030 101 73 3 chr9 105210941 105211228 -12651399 - AluSq SINE Alu -6 307 1 2454 81 0 3 chr9 105212855 105213162 -12649465 - AluSx SINE Alu -6 306 1 193 247 82 27 chr9 105213255 105213328 -12649299 - L2 LINE L2 -40 3232 3156 427 295 18 0 chr9 105214652 105214764 -12647863 + Charlie1 DNA MER1_type 34 147 -2614 2241 106 3 0 chr9 105214773 105215095 -12647532 + AluSq SINE Alu 1 323 0 2075 134 81 73 chr9 105215104 105215371 -12647256 + Charlie1 DNA MER1_type 2265 2528 -233 2183 109 3 10 chr9 105215371 105215673 -12646954 + AluSx SINE Alu 1 300 -12 1904 157 11 0 chr9 105215677 105215963 -12646664 + AluJb SINE Alu 1 289 -23 2075 134 81 73 chr9 105215963 105216010 -12646617 + Charlie1 DNA MER1_type 2530 2575 -186 1813 163 16 19 chr9 105216010 105216323 -12646304 + AluJb SINE Alu 1 312 0 2075 134 81 73 chr9 105216323 105216424 -12646203 + Charlie1 DNA MER1_type 2575 2693 -68 1531 173 9 71 chr9 105216424 105216748 -12645879 + AluJo SINE Alu 1 304 -8 2075 134 81 73 chr9 105216748 105216818 -12645809 + Charlie1 DNA MER1_type 2693 2761 0 203 222 0 0 chr9 105217386 105217431 -12645196 - L2 LINE L2 -13 3259 3215 418 343 73 17 chr9 105218222 105218455 -12644172 - MIR SINE MIR -8 254 9 298 318 137 11 chr9 105219111 105219318 -12643309 + L2 LINE L2 2792 3016 -256 230 193 18 0 chr9 105219414 105219471 -12643156 + L2 LINE L2 3214 3271 -1 279 228 89 20 chr9 105220565 105220666 -12641961 - MIR SINE MIR -74 188 81 256 250 125 9 chr9 105221963 105222073 -12640554 + MIR3 SINE MIR 59 180 -43 259 237 211 19 chr9 105222085 105222241 -12640386 - MIR SINE MIR -67 195 10 403 290 204 11 chr9 105222851 105223027 -12639600 + MIR SINE MIR 29 238 -24 556 199 226 11 chr9 105223487 105223668 -12638959 - MIR SINE MIR 0 262 43 251 323 21 10 chr9 105224065 105224161 -12638466 - MIR SINE MIR -68 140 44 1251 188 125 26 chr9 105224245 105224517 -12638110 + AluJo SINE Alu 1 299 -13 315 83 0 0 chr9 105224678 105224726 -12637901 - AluY SINE Alu -2 300 253 2197 71 4 21 chr9 105224726 105225007 -12637620 - AluY SINE Alu -35 276 1 434 244 96 19 chr9 105225641 105225797 -12636830 - L1ME4a LINE L1 -3 6118 5951 2800 275 76 26 chr9 105225849 105226607 -12636020 - L1MEc LINE L1 -2312 3903 3185 2310 107 3 0 chr9 105226607 105226916 -12635711 - AluSx SINE Alu -2 310 1 2800 275 76 26 chr9 105226916 105227628 -12634999 - L1MEc LINE L1 -3030 3185 2342 259 194 0 0 chr9 105227715 105227777 -12634850 - L1MEc LINE L1 -4137 2259 2198 270 260 150 70 chr9 105228134 105228221 -12634406 - L1ME4a LINE L1 -386 5735 5656 2108 115 0 60 chr9 105228221 105228552 -12634075 - AluSx SINE Alu -1 311 1 270 260 150 70 chr9 105228552 105228691 -12633936 - L1ME4a LINE L1 -465 5656 5491 1834 151 3 56 chr9 105229010 105229315 -12633312 + AluSx SINE Alu 1 289 -23 672 190 0 84 chr9 105229581 105229666 -12632961 + AluJo/FLAM SINE Alu 1 71 -231 2179 84 21 0 chr9 105229666 105229950 -12632677 + AluY SINE Alu 2 291 -20 672 190 0 84 chr9 105229950 105230006 -12632621 + AluJo/FLAM SINE Alu 71 130 -172 370 323 40 0 chr9 105230129 105230253 -12632374 - L2 LINE L2 -267 3046 2918 379 271 71 21 chr9 105231215 105231355 -12631272 + MIR SINE MIR 92 238 -24 1379 114 90 51 chr9 105232442 105232697 -12629930 + AluJo SINE Alu 27 291 -21 1448 168 16 16 chr9 105233084 105233334 -12629293 + AluJo SINE Alu 1 250 -62 430 265 111 48 chr9 105233363 105233557 -12629070 + L1ME4a LINE L1 5716 5896 -225 1287 137 21 17 chr9 105233557 105233790 -12628837 + L1MA4A LINE L1 6064 6297 -6 430 265 111 48 chr9 105233790 105233973 -12628654 + L1ME4a LINE L1 5896 6117 -4 507 259 132 33 chr9 105234547 105234759 -12627868 - MIR SINE MIR -14 248 16 739 265 74 5 chr9 105235430 105235645 -12626982 + MIR SINE MIR 2 231 -31 447 19 0 0 chr9 105235670 105235722 -12626905 + (CAT)n Simple_repeat Simple_repeat 2 53 0 371 281 62 34 chr9 105235783 105235992 -12626635 - MIR SINE MIR -25 237 19 2533 60 0 7 chr9 105237097 105237399 -12625228 - AluY SINE Alu -11 300 1 2077 134 3 26 chr9 105237410 105237723 -12624904 - 7SLRNA srpRNA srpRNA -13 307 2 362 211 42 0 chr9 105238082 105238177 -12624450 + MIR SINE MIR 128 226 -36 188 277 0 0 chr9 105238899 105238946 -12623681 + L2 LINE L2 3264 3310 -3 221 347 0 0 chr9 105239220 105239295 -12623332 - L2 LINE L2 -579 2735 2661 289 271 55 16 chr9 105241179 105241276 -12621351 + MIR SINE MIR 3 103 -105 203 204 68 0 chr9 105241317 105241361 -12621266 + MIR SINE MIR 212 258 -4 456 295 111 5 chr9 105241489 105241679 -12620948 - MIR SINE MIR -52 210 1 487 241 34 58 chr9 105242596 105242803 -12619824 + L1ME LINE L1 5621 5822 -299 1348 188 52 26 chr9 105242927 105243198 -12619429 + AluJo SINE Alu 17 294 -18 23 33 0 0 chr9 105243524 105243554 -12619073 + AT_rich Low_complexity Low_complexity 1 30 0 1686 161 33 7 chr9 105243870 105244144 -12618483 + AluJo SINE Alu 1 281 -31 248 91 23 0 chr9 105244145 105244189 -12618438 + (TA)n Simple_repeat Simple_repeat 2 46 0 777 225 5 57 chr9 105244562 105244771 -12617856 + MIR SINE MIR 37 234 -28 187 262 83 24 chr9 105244946 105245030 -12617597 + L2 LINE L2 2895 2983 -289 330 238 29 48 chr9 105246474 105246579 -12616048 + MIR SINE MIR 90 192 -70 294 276 13 0 chr9 105246891 105246967 -12615660 - L2 LINE L2 -9 3263 3187 203 61 30 0 chr9 105248548 105248581 -12614046 + (TTTA)n Simple_repeat Simple_repeat 1 34 0 451 87 159 0 chr9 105248583 105248652 -12613975 - LTR23 LTR ERV1 -38 399 320 584 266 79 0 chr9 105248754 105248936 -12613691 + MIR SINE MIR 64 259 -3 430 268 53 58 chr9 105249716 105249906 -12612721 - MIR SINE MIR -7 255 67 2470 84 3 0 chr9 105249908 105250218 -12612409 + AluSp SINE Alu 1 311 -2 2075 110 14 0 chr9 105251284 105251565 -12611062 - AluY SINE Alu 0 311 27 2173 103 0 13 chr9 105251578 105251878 -12610749 - AluSg1 SINE Alu -11 298 3 451 302 43 43 chr9 105251882 105252160 -12610467 - HAL1 LINE L1 -22 2485 2208 2428 85 0 3 chr9 105253082 105253387 -12609240 + AluSg SINE Alu 2 305 -5 2196 112 0 28 chr9 105253396 105253718 -12608909 + AluSq SINE Alu 1 313 0 215 245 0 0 chr9 105253781 105253834 -12608793 + L2 LINE L2 3159 3211 -102 246 156 0 0 chr9 105254019 105254064 -12608563 + A-rich Low_complexity Low_complexity 2 46 0 531 257 141 10 chr9 105255424 105255630 -12606997 - MIR SINE MIR -17 245 13 521 326 100 4 chr9 105255743 105255973 -12606654 + MIR SINE MIR 10 261 -1 348 258 106 30 chr9 105256177 105256375 -12606252 - L1MC4 LINE L1 -1 8041 7829 334 226 19 116 chr9 105256420 105256575 -12606052 - L1ME2 LINE L1 -10 6154 6015 209 355 0 16 chr9 105256617 105256679 -12605948 + MIR SINE MIR 20 80 -182 726 243 114 43 chr9 105257724 105257963 -12604664 + L1MC/D LINE L1 5311 5532 -848 2079 138 7 3 chr9 105257963 105258261 -12604366 - AluSx SINE Alu -13 299 1 726 243 114 43 chr9 105258261 105258465 -12604162 + L1MC/D LINE L1 5532 5777 -603 232 310 28 14 chr9 105258603 105258674 -12603953 - L2 LINE L2 -5 3267 3196 25 31 0 0 chr9 105258853 105258885 -12603742 + AT_rich Low_complexity Low_complexity 1 32 0 454 315 110 46 chr9 105259034 105259574 -12603053 + L2 LINE L2 2564 3254 -18 199 348 78 35 chr9 105259708 105259823 -12602804 + L2 LINE L2 2940 3059 -213 226 159 0 0 chr9 105260108 105260152 -12602475 - MIR SINE MIR -118 144 101 241 197 70 28 chr9 105260181 105260252 -12602375 + HsTC2 DNA Tc2 5 78 -1820 213 39 0 0 chr9 105261093 105261119 -12601508 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 279 332 42 14 chr9 105261607 105261722 -12600905 + MIR SINE MIR 4 119 -89 267 232 43 0 chr9 105261822 105261891 -12600736 + MIR SINE MIR 127 198 -64 1688 183 4 4 chr9 105262015 105262294 -12600333 - AluJb SINE Alu -33 279 1 1038 320 42 20 chr9 105262604 105263004 -12599623 - L2 LINE L2 -509 2805 2397 231 283 0 0 chr9 105263188 105263241 -12599386 + L2 LINE L2 3011 3063 -250 2439 68 0 43 chr9 105267911 105268236 -12594391 - AluY SINE Alu 0 311 1 1986 114 36 0 chr9 105268688 105268968 -12593659 - AluSg SINE Alu -20 290 1 193 307 110 24 chr9 105272074 105272201 -12590426 + MIR SINE MIR 99 236 -26 568 240 120 40 chr9 105272666 105272841 -12589786 - MIR SINE MIR 0 262 74 291 225 27 182 chr9 105272875 105273062 -12589565 - L2 LINE L2 -93 3179 3022 418 322 137 15 chr9 105273128 105273333 -12589294 + MIR SINE MIR 21 250 -12 443 272 35 124 chr9 105273462 105273664 -12588963 - MIR SINE MIR -66 196 13 225 264 11 58 chr9 105275603 105275690 -12586937 + MIR SINE MIR 58 140 -122 22 80 0 0 chr9 105275730 105275780 -12586847 + AT_rich Low_complexity Low_complexity 1 50 0 26 30 0 0 chr9 105277087 105277120 -12585507 + AT_rich Low_complexity Low_complexity 1 33 0 25 0 0 0 chr9 105277212 105277237 -12585390 + AT_rich Low_complexity Low_complexity 1 25 0 551 190 130 0 chr9 105277456 105277556 -12585071 + FLAM_A SINE Alu 9 121 -21 232 222 14 14 chr9 105277600 105277672 -12584955 + (TA)n Simple_repeat Simple_repeat 2 73 0 1991 119 3 14 chr9 105277914 105278207 -12584420 + AluSq SINE Alu 1 290 -23 654 158 94 8 chr9 105278287 105278414 -12584213 + MER58B DNA MER1_type 198 335 -6 1826 170 0 0 chr9 105278421 105278704 -12583923 + AluJb SINE Alu 9 291 -21 294 250 0 0 chr9 105279074 105279134 -12583493 + MER81 DNA DNA 55 114 0 1995 149 13 0 chr9 105279175 105279476 -12583151 + AluJo SINE Alu 1 305 -7 514 268 16 79 chr9 105279916 105280106 -12582521 - MIR SINE MIR -62 200 23 197 355 13 13 chr9 105280327 105280403 -12582224 - L2 LINE L2 -44 3228 3153 870 247 78 16 chr9 105280732 105280975 -12581652 - MIR SINE MIR 0 262 5 236 294 109 49 chr9 105281993 105282340 -12580287 + L1ME LINE L1 5383 5750 -371 233 263 26 0 chr9 105282395 105282471 -12580156 + L2 LINE L2 3163 3240 -73 2061 99 0 43 chr9 105282523 105282827 -12579800 - AluSg SINE Alu -19 291 1 1513 216 56 28 chr9 105283403 105283829 -12578798 + Charlie4a DNA MER1_type 9 446 -62 1978 141 6 16 chr9 105284963 105285275 -12577352 + AluJb SINE Alu 1 309 -3 456 276 186 19 chr9 105286267 105286477 -12576150 + MIR SINE MIR 6 250 -12 203 323 52 10 chr9 105286978 105287074 -12575553 - L2 LINE L2 -2 3270 3171 787 278 58 0 chr9 105287337 105287560 -12575067 - MIR SINE MIR -11 251 16 447 317 7 21 chr9 105287693 105287835 -12574792 - MIR3 SINE MIR -48 160 21 242 236 0 0 chr9 105288262 105288317 -12574310 + L2 LINE L2 3258 3312 -1 2146 96 14 4 chr9 105288362 105288670 -12573957 - AluSg SINE Alu 0 311 1 210 280 147 0 chr9 105289298 105289373 -12573254 + MIR SINE MIR 140 225 -37 328 265 43 86 chr9 105290355 105290517 -12572110 + MIR SINE MIR 88 242 -20 365 255 32 21 chr9 105290810 105290904 -12571723 - L2 LINE L2 -2 3270 3176 1917 169 10 0 chr9 105290943 105291251 -12571376 + AluJb SINE Alu 2 312 0 587 249 85 93 chr9 105291434 105291832 -12570795 + L2 LINE L2 2188 2582 -732 4319 85 26 0 chr9 105291852 105292392 -12570235 + MER41A LTR ERV1 1 554 0 299 150 288 12 chr9 105292476 105292556 -12570071 + MER41A-int LTR ERV1 1 102 -5844 9251 138 114 22 chr9 105292565 105294164 -12568463 + MER41A-int LTR ERV1 1 1746 -4200 740 118 133 15 chr9 105294164 105294299 -12568328 + MER41A-int LTR ERV1 1867 2017 -3929 * 9687 120 37 36 chr9 105294295 105296236 -12566391 + MER41A-int LTR ERV1 2167 4721 -1225 2063 107 0 24 chr9 105296236 105296547 -12566080 + AluSx SINE Alu 1 304 0 9687 120 37 36 chr9 105296547 105297769 -12564858 + MER41A-int LTR ERV1 4721 5941 -5 4188 105 11 0 chr9 105297779 105298323 -12564304 + MER41A LTR ERV1 5 554 0 653 331 80 46 chr9 105298326 105298737 -12563890 + L2 LINE L2 2848 3272 0 213 356 148 0 chr9 105298797 105298912 -12563715 + L2 LINE L2 3141 3272 0 188 172 0 0 chr9 105299442 105299471 -12563156 - L2 LINE L2 -12 3260 3232 * 515 350 44 5 chr9 105299455 105299658 -12562969 - MIR SINE MIR -49 213 3 1473 217 33 33 chr9 105299731 105300030 -12562597 + AluJo SINE Alu 1 299 -3 4674 158 115 9 chr9 105300199 105301129 -12561498 + L1MC2 LINE L1 5316 6344 0 6512 64 17 52 chr9 105301141 105303094 -12559533 + SVA Other Other 1 1386 0 2281 98 0 3 chr9 105303938 105304235 -12558392 - AluSq SINE Alu -17 296 1 4084 186 61 40 chr9 105304588 105304671 -12557956 - L1MC4a LINE L1 -91 7700 7620 5702 56 1 1 chr9 105304671 105305337 -12557290 + L1PA6 LINE L1 5485 6150 -4 4084 186 61 40 chr9 105305337 105306342 -12556285 - L1MC4a LINE L1 -171 7620 5120 318 221 186 52 chr9 105306347 105306519 -12556108 - L1MC4a LINE L1 -1074 5055 4861 561 239 104 49 chr9 105306546 105306893 -12555734 - L1MC4a LINE L1 -4903 1216 851 551 309 89 46 chr9 105307845 105308149 -12554478 + L2 LINE L2 2941 3257 -15 472 264 57 31 chr9 105308182 105308341 -12554286 + MIR SINE MIR 3 165 -97 226 226 177 0 chr9 105308325 105308387 -12554240 + MIR SINE MIR 52 124 -138 * 2592 53 0 0 chr9 105308424 105308723 -12553904 + AluY SINE Alu 1 299 -12 2025 98 47 0 chr9 105309093 105309369 -12553258 - AluSx SINE Alu -23 289 1 22 0 0 0 chr9 105309559 105309581 -12553046 + AT_rich Low_complexity Low_complexity 1 22 0 510 283 54 45 chr9 105309682 105309905 -12552722 + MIR SINE MIR 24 248 -14 518 335 65 58 chr9 105310819 105311392 -12551235 + L2 LINE L2 81 657 -2657 209 276 92 92 chr9 105311441 105311637 -12550990 + L2 LINE L2 2340 2535 -779 3845 165 77 44 chr9 105311637 105311926 -12550701 + L1MB7 LINE L1 4877 5155 -1029 2007 136 7 0 chr9 105311926 105312227 -12550400 + AluSx SINE Alu 1 303 -9 3845 165 77 44 chr9 105312227 105313201 -12549426 + L1MB7 LINE L1 5155 6168 -16 760 301 51 71 chr9 105313209 105313694 -12548933 + L2 LINE L2 2530 3007 -265 524 178 10 20 chr9 105313698 105313799 -12548828 + MIR SINE MIR 82 181 -81 181 0 0 65 chr9 105313800 105313831 -12548796 + (TTA)n Simple_repeat Simple_repeat 3 31 0 360 275 45 65 chr9 105313895 105314095 -12548532 + L2 LINE L2 3118 3313 0 191 188 146 0 chr9 105314105 105314153 -12548474 + L2 LINE L2 3206 3260 -12 2059 129 0 0 chr9 105315006 105315301 -12547326 + AluSq SINE Alu 1 295 -18 496 287 46 42 chr9 105315319 105315421 -12547206 - MIR SINE MIR -8 254 154 1974 144 7 3 chr9 105315421 105315712 -12546915 - AluSx SINE Alu -19 293 2 496 287 46 42 chr9 105315712 105315846 -12546781 - MIR SINE MIR -108 154 17 544 181 102 8 chr9 105316982 105317109 -12545518 + L1ME4a LINE L1 5983 6121 0 2531 50 3 0 chr9 105317261 105317560 -12545067 + AluY SINE Alu 1 300 -11 201 74 0 0 chr9 105317616 105317643 -12544984 + (A)n Simple_repeat Simple_repeat 1 27 0 1868 142 10 26 chr9 105317653 105317955 -12544672 + AluSx SINE Alu 1 297 -15 2083 123 10 3 chr9 105318018 105318319 -12544308 + AluSx SINE Alu 1 303 -9 374 308 168 41 chr9 105318541 105318982 -12543645 + L2 LINE L2 2329 2825 -489 431 242 23 74 chr9 105318999 105319170 -12543457 + MIR SINE MIR 11 180 -28 201 289 79 0 chr9 105319571 105319647 -12542980 + L2 LINE L2 3230 3311 -2 277 299 104 0 chr9 105319649 105319793 -12542834 - L1ME LINE L1 -282 5839 5681 254 221 35 47 chr9 105319801 105319887 -12542740 - L1ME LINE L1 -476 5645 5561 1033 176 10 10 chr9 105321597 105321620 -12541007 + AluJb SINE Alu 112 134 -178 2624 48 3 10 chr9 105321620 105321931 -12540696 + AluY SINE Alu 1 309 -2 1033 176 10 10 chr9 105321931 105322100 -12540527 + AluJb SINE Alu 133 304 -8 810 233 38 46 chr9 105323205 105323397 -12539230 + MIR SINE MIR 2 193 -69 2175 93 31 0 chr9 105323397 105323687 -12538940 + AluSq SINE Alu 1 299 -14 810 233 38 46 chr9 105323687 105323756 -12538871 + MIR SINE MIR 193 261 -1 394 336 53 53 chr9 105323855 105324102 -12538525 - L3 LINE CR1 -74 1503 1257 2010 88 6 94 chr9 105324243 105324572 -12538055 - AluSq SINE Alu -13 300 1 390 316 46 20 chr9 105324988 105325140 -12537487 + MIR SINE MIR 36 191 -71 1746 175 3 0 chr9 105326624 105326909 -12535718 + AluJb SINE Alu 15 300 -12 283 195 156 0 chr9 105327327 105327404 -12535223 - MIR SINE MIR -12 250 162 267 103 0 0 chr9 105327465 105327504 -12535123 + Alu SINE Alu 252 290 -12 1271 216 6 57 chr9 105327532 105327847 -12534780 - AluJo SINE Alu -13 299 1 207 325 0 36 chr9 105330837 105330920 -12531707 + GA-rich Low_complexity Low_complexity 4 83 0 562 258 84 23 chr9 105331549 105331772 -12530855 + MIR SINE MIR 6 246 -16 383 151 55 14 chr9 105331784 105331857 -12530770 + MER116 DNA Mariner 1 76 -4 630 294 78 22 chr9 105332010 105332241 -12530386 - MIR SINE MIR -6 256 13 2164 75 0 18 chr9 105332279 105332557 -12530070 - AluSc SINE Alu -2 307 35 203 189 0 0 chr9 105332912 105332949 -12529678 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 201 74 0 0 chr9 105334110 105334137 -12528490 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 681 203 31 0 chr9 105334152 105334280 -12528347 - FLAM_A SINE Alu -1 132 1 458 267 159 15 chr9 105334488 105334683 -12527944 - MIR SINE MIR -23 239 17 466 318 73 16 chr9 105335319 105335564 -12527063 + L1ME3A LINE L1 462 720 -5399 865 253 79 32 chr9 105335891 105336284 -12526343 + L1ME3A LINE L1 897 1255 -4864 534 288 117 18 chr9 105336283 105336572 -12526055 + L1ME3A LINE L1 2274 2622 -3507 * 940 138 34 223 chr9 105336572 105336863 -12525764 - MER46A DNA MER2_type 0 236 1 534 288 117 18 chr9 105336863 105337010 -12525617 + L1ME3A LINE L1 2622 2753 -3376 26 0 0 0 chr9 105337043 105337069 -12525558 + AT_rich Low_complexity Low_complexity 1 26 0 278 148 0 66 chr9 105337240 105337301 -12525326 - L1ME LINE L1 -465 5699 5643 649 330 78 22 chr9 105337317 105337780 -12524847 + ERVL LTR ERVL 4892 5380 -384 1652 260 18 23 chr9 105337903 105338338 -12524289 + LTR16A LTR ERVL 18 450 0 1005 257 107 93 chr9 105338363 105338435 -12524192 + L1ME3A LINE L1 3530 3600 -2529 2558 50 0 3 chr9 105338435 105338735 -12523892 - AluY SINE Alu -12 299 1 1005 257 107 93 chr9 105338735 105338979 -12523648 + L1ME3A LINE L1 3600 3839 -2290 2134 111 0 7 chr9 105338979 105339267 -12523360 + AluSx SINE Alu 1 286 -26 1005 257 107 93 chr9 105339267 105340046 -12522581 + L1ME3A LINE L1 3839 4641 -1488 1074 98 0 0 chr9 105340048 105340181 -12522446 + AluSq/x SINE Alu 1 133 -180 971 280 90 23 chr9 105340248 105340268 -12522359 + L1ME3A LINE L1 4657 4674 -1479 2179 136 0 3 chr9 105340268 105340577 -12522050 + AluSx SINE Alu 1 308 -4 971 280 90 23 chr9 105340577 105341464 -12521163 + L1ME3A LINE L1 4674 5634 -519 336 210 42 103 chr9 105341499 105341685 -12520942 - MER112 DNA MER1_type -49 211 38 470 176 49 10 chr9 105341685 105341787 -12520840 + L1MA7 LINE L1 6168 6273 -18 336 210 42 103 chr9 105341787 105341814 -12520813 - MER112 DNA MER1_type -222 38 11 1203 215 45 31 chr9 105341819 105342107 -12520520 + AluJo SINE Alu 4 295 -17 700 231 172 61 chr9 105342157 105342423 -12520204 + L1ME3A LINE L1 5675 5967 -137 22 56 0 0 chr9 105342598 105342634 -12519993 + AT_rich Low_complexity Low_complexity 1 36 0 1972 97 0 0 chr9 105342750 105343009 -12519618 + AluSx SINE Alu 54 312 0 1677 208 0 3 chr9 105343487 105343790 -12518837 + AluJb SINE Alu 1 302 -10 779 123 0 0 chr9 105344021 105344127 -12518500 + AluSg/x SINE Alu 190 295 -17 335 257 182 21 chr9 105344149 105344336 -12518291 + L1MC4a LINE L1 4208 4424 -1722 2207 222 143 34 chr9 105344596 105344664 -12517963 + L1MC4a LINE L1 5367 5426 -2382 2059 110 4 0 chr9 105344664 105344936 -12517691 + AluSx SINE Alu 1 273 -39 2207 222 143 34 chr9 105344936 105345614 -12517013 + L1MC4a LINE L1 5426 6195 -1613 1995 159 0 0 chr9 105345627 105345935 -12516692 + AluJb SINE Alu 1 308 -4 342 248 178 23 chr9 105345946 105346075 -12516552 - MIR SINE MIR -8 254 106 * 477 246 69 0 chr9 105346073 105346203 -12516424 + MIR SINE MIR 124 262 0 2706 129 28 44 chr9 105346527 105347068 -12515559 + L1MA5 LINE L1 5751 6281 -19 2293 119 0 0 chr9 105347071 105347381 -12515246 - AluSg SINE Alu 0 310 1 6675 72 16 78 chr9 105347433 105349918 -12512709 + SVA Other Other 13 1409 0 201 108 0 0 chr9 105350045 105350082 -12512545 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 2245 129 0 0 chr9 105350152 105350461 -12512166 + AluSx SINE Alu 2 310 -2 1085 165 82 5 chr9 105351108 105351302 -12511325 - MER3 DNA MER1_type 0 209 1 605 248 42 65 chr9 105351482 105351696 -12510931 - MIR SINE MIR 0 262 54 21 0 0 0 chr9 105352017 105352038 -12510589 + AT_rich Low_complexity Low_complexity 1 21 0 370 171 31 27 chr9 105352202 105352322 -12510305 - AluYb8 SINE Alu -120 188 135 315 237 53 0 chr9 105352472 105352548 -12510079 - MIR3 SINE MIR -11 197 118 310 368 177 14 chr9 105352621 105352977 -12509650 - L2 LINE L2 -5 3267 2854 3901 170 80 41 chr9 105353098 105353505 -12509122 + L1MB2 LINE L1 4898 5287 -884 312 48 0 0 chr9 105353505 105353547 -12509080 + (CAA)n Simple_repeat Simple_repeat 1 42 0 3901 170 80 41 chr9 105353547 105353693 -12508934 + L1MB2 LINE L1 5287 5426 -745 342 0 0 0 chr9 105353693 105353731 -12508896 + (CA)n Simple_repeat Simple_repeat 2 39 0 3901 170 80 41 chr9 105353731 105354407 -12508220 + L1MB2 LINE L1 5426 6164 -7 1682 147 0 21 chr9 105354791 105355070 -12507557 - AluJb SINE Alu -39 273 1 213 167 0 24 chr9 105355177 105355219 -12507408 - MIR SINE MIR -64 144 104 2341 157 47 33 chr9 105355308 105355502 -12507125 + MSTB1 LTR MaLR 1 191 -241 1549 141 0 36 chr9 105355502 105355750 -12506877 + AluJo SINE Alu 59 297 -15 2341 157 47 33 chr9 105355750 105355981 -12506646 + MSTB1 LTR MaLR 191 432 0 515 293 88 81 chr9 105356325 105356576 -12506051 + L2 LINE L2 2836 3093 -179 2251 114 0 7 chr9 105356576 105356883 -12505744 + AluSx SINE Alu 1 305 -7 515 293 88 81 chr9 105356883 105357065 -12505562 + L2 LINE L2 3093 3272 0 * 912 343 109 23 chr9 105357057 105357708 -12504919 - L3 LINE CR1 -594 983 277 275 252 45 4 chr9 105361414 105361529 -12501098 - MIR SINE MIR -77 131 11 2362 104 0 16 chr9 105361625 105361942 -12500685 + AluSx SINE Alu 1 312 0 272 263 118 0 chr9 105362285 105362361 -12500266 + MIR SINE MIR 108 192 -70 1969 134 10 0 chr9 105362420 105362710 -12499917 - AluSx SINE Alu -19 293 1 1714 135 0 8 chr9 105363622 105363910 -12498717 + AluSx SINE Alu 28 313 0 796 253 59 14 chr9 105363918 105364139 -12498488 + MIR SINE MIR 32 262 0 271 348 51 17 chr9 105364223 105364401 -12498226 - L2 LINE L2 -113 3159 2976 277 338 112 52 chr9 105364613 105364751 -12497876 + L2 LINE L2 2983 3111 -161 2506 52 0 0 chr9 105364751 105365041 -12497586 - AluY SINE Alu -21 290 1 277 338 112 52 chr9 105365041 105365171 -12497456 + L2 LINE L2 3111 3267 -5 193 309 0 118 chr9 105365282 105365418 -12497209 - MIR3 SINE MIR -45 163 44 377 288 124 53 chr9 105365586 105365812 -12496815 + MIR SINE MIR 20 261 -1 1545 180 9 50 chr9 105366265 105366388 -12496239 + AluJb SINE Alu 4 130 -182 2097 126 0 0 chr9 105366388 105366673 -12495954 + AluSx SINE Alu 1 285 -27 1545 180 9 50 chr9 105366673 105366871 -12495756 + AluJb SINE Alu 130 312 0 230 213 19 120 chr9 105366902 105367010 -12495617 - HAL1b LINE L1 -94 1254 1158 3202 128 42 0 chr9 105367037 105367515 -12495112 + MER41E LTR ERV1 15 512 0 2283 99 0 0 chr9 105367543 105367837 -12494790 - AluSx SINE Alu -17 295 2 2136 122 0 10 chr9 105367838 105368133 -12494494 - AluSx SINE Alu -20 292 1 795 281 92 15 chr9 105368133 105368479 -12494148 - L1MC4a LINE L1 -303 5818 5533 2384 99 0 0 chr9 105370093 105370397 -12492230 + AluSx SINE Alu 1 304 -8 25 0 0 0 chr9 105370579 105370604 -12492023 + AT_rich Low_complexity Low_complexity 1 25 0 437 171 73 0 chr9 105370879 105370949 -12491678 + FLAM SINE Alu 43 121 -191 270 0 0 0 chr9 105370949 105370979 -12491648 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 437 171 73 0 chr9 105370979 105370990 -12491637 + FLAM SINE Alu 121 130 -182 293 260 205 31 chr9 105371040 105371167 -12491460 + MIR SINE MIR 100 248 -14 239 305 133 9 chr9 105372587 105372692 -12489935 - MIR SINE MIR -122 140 23 21 0 0 0 chr9 105372708 105372729 -12489898 + AT_rich Low_complexity Low_complexity 1 21 0 317 273 53 23 chr9 105372766 105372898 -12489729 + MIR3 SINE MIR 1 136 -72 528 364 11 0 chr9 105373039 105373226 -12489401 - MIR3 SINE MIR -1 207 19 2266 98 20 0 chr9 105373299 105373604 -12489023 + AluSx SINE Alu 1 311 -1 271 69 56 153 chr9 105374384 105374456 -12488171 + AluYb8 SINE Alu 243 307 -1 219 224 254 0 chr9 105374479 105374546 -12488081 + MIR SINE MIR 34 117 -91 471 347 113 26 chr9 105374598 105375181 -12487446 + L2 LINE L2 2385 3024 -248 983 175 0 0 chr9 105375615 105375769 -12486858 - FRAM SINE Alu -12 154 1 2228 105 3 3 chr9 105375961 105376266 -12486361 + AluSq SINE Alu 1 305 -8 232 224 196 19 chr9 105377686 105377793 -12484834 - MIR SINE MIR -11 251 126 927 236 64 29 chr9 105377801 105378286 -12484341 - MER39 LTR ERV1 0 680 5 223 187 133 40 chr9 105378295 105378370 -12484257 - MIR SINE MIR -151 111 30 22 0 0 0 chr9 105379879 105379901 -12482726 + AT_rich Low_complexity Low_complexity 1 22 0 288 154 0 0 chr9 105381939 105381991 -12480636 + (TA)n Simple_repeat Simple_repeat 2 53 0 402 292 199 19 chr9 105382701 105382862 -12479765 + MIR3 SINE MIR 19 208 0 272 105 0 0 chr9 105382992 105383030 -12479597 + U2 snRNA snRNA 1 38 -150 553 289 53 0 chr9 105383061 105383213 -12479414 - MIR SINE MIR -67 195 36 196 150 25 0 chr9 105383235 105383275 -12479352 + L2 LINE L2 3273 3313 0 541 158 0 0 chr9 105383603 105383685 -12478942 + AluJ/FLAM SINE Alu 1 82 -230 244 280 134 51 chr9 105383824 105383981 -12478646 - MIR SINE MIR -14 248 79 2562 239 126 10 chr9 105384016 105384847 -12477780 + L2 LINE L2 1288 2215 -1099 1170 203 9 5 chr9 105384847 105385069 -12477558 + L1ME2 LINE L1 5932 6154 -10 914 270 220 7 chr9 105385102 105385521 -12477106 + L2 LINE L2 2207 2714 -600 1525 266 129 9 chr9 105385633 105386262 -12476365 + L1MC4a LINE L1 5256 5959 -1849 299 277 150 28 chr9 105386307 105386520 -12476107 + L1MC4a LINE L1 6065 6303 -1505 353 205 111 37 chr9 105386540 105386730 -12475897 + L1MC5 LINE L1 7452 7655 -306 1822 178 0 3 chr9 105386734 105387027 -12475600 + AluJb SINE Alu 1 292 -20 2448 82 0 0 chr9 105387037 105387343 -12475284 + AluY SINE Alu 1 306 -5 46 86 0 0 chr9 105387349 105387465 -12475162 + AT_rich Low_complexity Low_complexity 1 116 0 759 219 48 19 chr9 105387487 105387702 -12474925 + L1MC5 LINE L1 7703 8042 0 1324 247 126 38 chr9 105387737 105388282 -12474345 + L2 LINE L2 2709 3313 0 2453 96 0 0 chr9 105388700 105389012 -12473615 + AluSq SINE Alu 1 312 -1 2461 93 0 0 chr9 105389078 105389388 -12473239 + AluSx SINE Alu 1 310 -2 481 303 38 27 chr9 105389469 105389654 -12472973 + MIR SINE MIR 3 189 -73 1892 153 0 31 chr9 105389655 105389975 -12472652 + AluSx SINE Alu 1 310 -2 197 250 0 0 chr9 105390010 105390050 -12472577 + MER5B DNA MER1_type 17 56 -122 444 172 17 43 chr9 105390152 105390268 -12472359 + LTR7 LTR ERV1 302 414 -36 258 351 0 0 chr9 105390287 105390361 -12472266 + MER5A DNA MER1_type 61 134 -55 193 360 140 26 chr9 105390556 105390670 -12471957 + L2 LINE L2 3146 3272 0 22 0 0 0 chr9 105390716 105390738 -12471889 + AT_rich Low_complexity Low_complexity 1 22 0 520 210 100 0 chr9 105391157 105391257 -12471370 + FLAM_A SINE Alu 1 110 -32 1636 131 8 4 chr9 105391970 105392206 -12470421 - AluSx SINE Alu -27 285 49 967 128 7 7 chr9 105392206 105392347 -12470280 - AluSq/x SINE Alu -172 141 1 275 289 132 16 chr9 105392896 105393017 -12469610 + MIR SINE MIR 80 214 -48 242 247 14 68 chr9 105393097 105393170 -12469457 - L2 LINE L2 -7 3306 3238 2265 98 14 0 chr9 105393537 105393832 -12468795 + AluSx SINE Alu 1 299 -13 2074 138 3 0 chr9 105393834 105394139 -12468488 + AluSq SINE Alu 1 306 -7 23 68 0 0 chr9 105394376 105394420 -12468207 + AT_rich Low_complexity Low_complexity 1 44 0 348 341 69 35 chr9 105396426 105396716 -12465911 - L3 LINE CR1 -50 1527 1228 2173 94 10 0 chr9 105397848 105398161 -12464466 - AluSp SINE Alu 0 316 1 23 33 0 0 chr9 105398165 105398195 -12464432 + AT_rich Low_complexity Low_complexity 1 30 0 1542 172 0 73 chr9 105398273 105398576 -12464051 + AluJo SINE Alu 1 281 -31 189 0 0 0 chr9 105398580 105398601 -12464026 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 404 286 225 38 chr9 105398688 105398901 -12463726 + MIR SINE MIR 8 260 -2 316 53 0 0 chr9 105399895 105399933 -12462694 - U2 snRNA snRNA -150 38 1 249 250 206 54 chr9 105400306 105400398 -12462229 + L2 LINE L2 3151 3256 -16 531 265 128 27 chr9 105400701 105401014 -12461613 + L1MB3 LINE L1 5448 5685 -436 2375 141 41 27 chr9 105401034 105401445 -12461182 + L1MB3 LINE L1 5765 6181 -2 521 160 19 103 chr9 105401458 105401614 -12461013 + MER103 DNA DNA 11 153 -13 1472 119 151 12 chr9 105401792 105402043 -12460584 + AluSg1 SINE Alu 1 286 -23 1992 146 7 0 chr9 105402049 105402351 -12460276 + AluSx SINE Alu 1 304 -8 1994 157 0 3 chr9 105402554 105402853 -12459774 - AluJb SINE Alu -14 298 1 2311 57 7 0 chr9 105402864 105403177 -12459450 - AluY SINE Alu 0 315 1 239 277 0 31 chr9 105403231 105403296 -12459331 - L2 LINE L2 -8 3305 3243 254 318 34 0 chr9 105403479 105403567 -12459060 - MIR SINE MIR -133 129 39 2273 108 0 0 chr9 105403640 105403937 -12458690 - AluSx SINE Alu -15 297 1 21 0 0 0 chr9 105404721 105404742 -12457885 + AT_rich Low_complexity Low_complexity 1 21 0 650 233 40 51 chr9 105405587 105405763 -12456864 - MIR SINE MIR 0 262 89 884 234 74 22 chr9 105405769 105406025 -12456602 + MLT1H LTR MaLR 4 317 -232 1586 164 41 7 chr9 105406424 105406693 -12455934 - AluJb SINE Alu -30 282 5 305 236 142 75 chr9 105407454 105407560 -12455067 - L2 LINE L2 -1 3312 3200 2363 83 10 7 chr9 105407592 105407892 -12454735 - AluSq SINE Alu -12 301 1 1955 242 49 41 chr9 105407904 105408438 -12454189 + MLT1E LTR MaLR 56 593 0 820 234 27 54 chr9 105408865 105409087 -12453540 + MER20 DNA MER1_type 2 217 -2 229 119 71 0 chr9 105409088 105409130 -12453497 + MLT1H LTR MaLR 433 477 -28 1213 179 40 5 chr9 105409384 105409607 -12453020 - AluJo SINE Alu -81 231 1 1063 246 231 13 chr9 105409708 105410238 -12452389 - L2 LINE L2 -1 3312 2671 267 358 117 15 chr9 105410299 105410436 -12452191 + L2 LINE L2 3118 3268 -4 2055 98 39 23 chr9 105410670 105411008 -12451619 + AluY SINE Alu 1 343 0 268 286 196 23 chr9 105411035 105411168 -12451459 + MIR3 SINE MIR 40 195 -13 1995 114 10 13 chr9 105411446 105411754 -12450873 - AluSx SINE Alu -1 311 5 1115 197 31 51 chr9 105411916 105412170 -12450457 + MLT2B3 LTR ERVL 306 554 0 317 290 35 69 chr9 105412304 105412535 -12450092 - L1M4 LINE L1 -6318 224 2 329 290 93 47 chr9 105412542 105412735 -12449892 - L2 LINE L2 -940 2374 2173 2277 114 0 0 chr9 105413157 105413454 -12449173 - AluSx SINE Alu -15 297 1 1361 164 0 13 chr9 105413456 105413687 -12448940 - AluJo SINE Alu -1 311 84 389 358 89 45 chr9 105413796 105414506 -12448121 - L2 LINE L2 -1961 1353 613 290 160 20 0 chr9 105414829 105414879 -12447748 + Charlie7 DNA MER1_type 50 100 -2512 2052 133 0 7 chr9 105415020 105415321 -12447306 + AluSx SINE Alu 1 299 -13 281 311 57 4 chr9 105415414 105415642 -12446985 - L1ME3A LINE L1 -218 5952 5713 1680 230 79 32 chr9 105415645 105416180 -12446447 - MLT1F1 LTR MaLR -4 563 2 700 264 236 7 chr9 105416251 105416675 -12445952 + Charlie7 DNA MER1_type 83 603 -2009 180 111 0 0 chr9 105416675 105416702 -12445925 + (TTTC)n Simple_repeat Simple_repeat 3 29 0 7449 157 11 83 chr9 105416705 105418138 -12444489 + SVA Other Other 58 1386 0 1669 141 65 68 chr9 105418143 105418511 -12444116 + L1MB4 LINE L1 5813 6179 -1 1092 211 68 39 chr9 105418788 105418837 -12443790 + L1 LINE L1 3211 3257 -2889 2329 96 0 3 chr9 105418837 105419129 -12443498 + AluSg1 SINE Alu 1 291 -18 2126 132 0 3 chr9 105419132 105419435 -12443192 + AluSx SINE Alu 1 302 -10 1092 211 68 39 chr9 105419435 105419733 -12442894 + L1 LINE L1 3258 3576 -2570 2104 118 3 29 chr9 105419733 105420047 -12442580 + AluSx SINE Alu 3 308 -4 1092 211 68 39 chr9 105420047 105420078 -12442549 + L1 LINE L1 3576 3605 -2541 185 346 136 12 chr9 105420481 105420562 -12442065 + L2 LINE L2 3143 3233 -39 3806 158 54 2 chr9 105420722 105421348 -12441279 + L1MB7 LINE L1 5526 6184 0 2301 98 0 3 chr9 105421806 105422103 -12440524 + AluSq SINE Alu 1 296 -17 744 227 0 0 chr9 105422118 105422294 -12440333 + (CA)n Simple_repeat Simple_repeat 2 177 0 308 222 0 101 chr9 105422294 105422393 -12440234 - L1MC4 LINE L1 -1339 6703 6615 609 248 0 0 chr9 105422398 105422559 -12440068 + (CATATA)n Simple_repeat Simple_repeat 2 162 0 725 155 9 0 chr9 105422562 105422678 -12439949 + FLAM_C SINE Alu 1 117 -16 36 0 0 0 chr9 105422686 105422722 -12439905 + AT_rich Low_complexity Low_complexity 1 36 0 2151 129 3 0 chr9 105422722 105423016 -12439611 + AluSx SINE Alu 1 295 -17 21 0 0 0 chr9 105423780 105423801 -12438826 + AT_rich Low_complexity Low_complexity 1 21 0 2139 103 3 0 chr9 105424565 105424847 -12437780 - AluSp SINE Alu -6 307 25 1139 134 0 6 chr9 105425111 105425333 -12437294 + AluJb SINE Alu 140 360 0 970 192 92 35 chr9 105425459 105425720 -12436907 + MER93b LTR ERV1 98 373 0 1238 220 101 22 chr9 105426284 105426698 -12435929 - L1ME4a LINE L1 -193 5928 5482 382 178 30 7 chr9 105427019 105427154 -12435473 + (TA)n Simple_repeat Simple_repeat 1 138 0 2104 143 46 17 chr9 105427316 105427505 -12435122 - MER46B DNA MER2_type -2496 235 53 1783 140 31 10 chr9 105427505 105427797 -12434830 - AluJo SINE Alu -14 298 1 2104 143 46 17 chr9 105427797 105427919 -12434708 - MER46B DNA MER2_type -2678 53 35 1704 166 69 0 chr9 105427919 105428209 -12434418 - AluJb SINE Alu -2 310 1 2104 143 46 17 chr9 105428209 105428246 -12434381 - MER46B DNA MER2_type -2696 35 1 288 222 42 14 chr9 105428288 105428360 -12434267 - MIR SINE MIR -57 205 132 23 0 0 0 chr9 105429114 105429137 -12433490 + AT_rich Low_complexity Low_complexity 1 23 0 191 275 0 0 chr9 105429381 105429421 -12433206 + MIR SINE MIR 67 106 -102 1332 169 15 92 chr9 105430417 105430547 -12432080 + AluJo SINE Alu 9 147 -165 2412 74 3 0 chr9 105430547 105430844 -12431783 + AluSp SINE Alu 1 298 -15 1332 169 15 92 chr9 105430844 105430864 -12431763 + AluJo SINE Alu 147 167 -145 2331 112 0 0 chr9 105430864 105431169 -12431458 + AluSq SINE Alu 1 305 -8 1332 169 15 92 chr9 105431169 105431342 -12431285 + AluJo SINE Alu 167 308 -4 635 235 7 26 chr9 105431344 105431497 -12431130 + Charlie8 DNA MER1_type 117 266 -2151 199 255 0 20 chr9 105431614 105431665 -12430962 + MIR SINE MIR 63 112 -150 2142 112 7 0 chr9 105431794 105432081 -12430546 + AluSx SINE Alu 11 299 -13 441 292 151 32 chr9 105432454 105432673 -12429954 + MIR SINE MIR 2 246 -16 291 296 45 83 chr9 105432780 105432912 -12429715 + L2 LINE L2 3182 3308 -5 316 281 128 39 chr9 105433130 105433333 -12429294 - MIR SINE MIR -41 221 14 369 231 213 9 chr9 105433524 105433632 -12428995 + MIR SINE MIR 20 149 -113 267 293 98 65 chr9 105433828 105433951 -12428676 + L2 LINE L2 3141 3267 -5 230 273 15 0 chr9 105435190 105435256 -12427371 + (CGGG)n Simple_repeat Simple_repeat 2 68 0 631 276 86 22 chr9 105435812 105436044 -12426583 + MIR SINE MIR 13 259 -3 2324 88 14 0 chr9 105436378 105436675 -12425952 + AluSx SINE Alu 1 301 -11 1941 159 55 3 chr9 105436707 105437034 -12425593 - MER7A DNA MER2_type -2 344 3 690 129 0 30 chr9 105437395 105437496 -12425131 + AluJb SINE Alu 29 126 -186 208 158 0 26 chr9 105437503 105437509 -12425118 + (CATATA)n Simple_repeat Simple_repeat 3 8 -31 1917 103 26 55 chr9 105437509 105437819 -12424808 + AluSc SINE Alu 1 301 -8 208 158 0 26 chr9 105437819 105437850 -12424777 + (CATATA)n Simple_repeat Simple_repeat 8 39 0 1047 160 0 17 chr9 105437855 105438030 -12424597 + AluJb SINE Alu 134 305 -7 484 250 40 57 chr9 105438032 105438208 -12424419 + MIR SINE MIR 56 228 -34 223 279 0 16 chr9 105438283 105438344 -12424283 - L2 LINE L2 -64 3208 3149 294 309 218 30 chr9 105438392 105438861 -12423766 - L2 LINE L2 -2032 1282 726 261 299 30 37 chr9 105439221 105439355 -12423272 + AluJb SINE Alu 89 221 -81 856 171 50 7 chr9 105439534 105439674 -12422953 - AluJo SINE Alu -166 146 1 2103 139 0 0 chr9 105439701 105439996 -12422631 + AluSx SINE Alu 1 295 -17 1804 119 63 4 chr9 105440006 105440275 -12422352 + AluSg SINE Alu 1 285 -25 45 19 0 0 chr9 105440275 105440327 -12422300 + AT_rich Low_complexity Low_complexity 1 52 0 2239 120 3 0 chr9 105440727 105441036 -12421591 - AluSx SINE Alu -2 310 1 2517 61 0 13 chr9 105441168 105441480 -12421147 - AluY SINE Alu -3 308 1 625 201 75 85 chr9 105441482 105441775 -12420852 - L2 LINE L2 -10 3303 3014 1060 199 27 23 chr9 105441845 105442066 -12420561 + AluJb SINE Alu 84 305 -7 307 230 124 62 chr9 105442085 105442246 -12420381 - MIR SINE MIR -91 171 1 1976 127 7 0 chr9 105442839 105443122 -12419505 + AluSx SINE Alu 1 285 -27 286 363 62 26 chr9 105443255 105443364 -12419263 - MIR SINE MIR -54 208 88 2186 131 3 0 chr9 105443364 105443669 -12418958 + AluSx SINE Alu 1 306 -6 286 363 62 26 chr9 105443669 105443752 -12418875 - MIR SINE MIR -174 88 9 1862 87 0 16 chr9 105443927 105444169 -12418458 + AluSx SINE Alu 59 296 -16 2183 110 10 0 chr9 105444171 105444463 -12418164 + AluSx SINE Alu 3 297 -15 237 274 27 0 chr9 105444615 105444688 -12417939 - HAL1 LINE L1 0 2507 2433 30 0 0 0 chr9 105444947 105444977 -12417650 + AT_rich Low_complexity Low_complexity 1 30 0 241 186 0 0 chr9 105446108 105446151 -12416476 - L2 LINE L2 0 3313 3271 645 234 45 30 chr9 105446461 105446652 -12415975 + MIR SINE MIR 6 197 -65 2246 105 0 7 chr9 105446977 105447273 -12415354 + AluSx SINE Alu 1 294 -18 299 320 41 25 chr9 105447349 105447471 -12415156 + L2 LINE L2 3149 3272 0 490 228 148 7 chr9 105447505 105447654 -12414973 + MIR SINE MIR 71 240 -22 1115 173 11 0 chr9 105448147 105448478 -12414149 + AluJb SINE Alu 1 333 0 201 216 0 0 chr9 105448441 105448646 -12413981 + GA-rich Low_complexity Low_complexity 1 205 0 * 207 167 0 0 chr9 105448849 105448891 -12413736 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 879 256 32 55 chr9 105449390 105449536 -12413091 + LTR16A LTR ERVL 77 225 -225 2058 152 0 3 chr9 105449536 105449846 -12412781 + AluSx SINE Alu 4 312 0 879 256 32 55 chr9 105449846 105450008 -12412619 + LTR16A LTR ERVL 225 378 -72 575 317 140 22 chr9 105450024 105450355 -12412272 + L2 LINE L2 1561 1852 -1462 2168 112 7 0 chr9 105450355 105450658 -12411969 + AluSx SINE Alu 1 305 -7 575 317 140 22 chr9 105450658 105450963 -12411664 + L2 LINE L2 1852 2272 -1042 33 0 0 0 chr9 105451908 105451941 -12410686 + AT_rich Low_complexity Low_complexity 1 33 0 24 32 0 0 chr9 105452171 105452202 -12410425 + AT_rich Low_complexity Low_complexity 1 31 0 210 315 167 0 chr9 105452510 105452618 -12410009 - L2 LINE L2 0 3272 3147 489 119 0 61 chr9 105452640 105452744 -12409883 + L1M3 LINE L1 5517 5608 -560 1791 148 7 7 chr9 105452744 105453022 -12409605 + AluJo SINE Alu 1 278 -34 21 0 0 75 chr9 105453538 105453578 -12409049 + AT_rich Low_complexity Low_complexity 1 37 0 1903 149 3 3 chr9 105453702 105453998 -12408629 - AluJb SINE Alu -16 296 1 21 36 0 0 chr9 105454476 105454504 -12408123 + AT_rich Low_complexity Low_complexity 1 28 0 189 241 0 93 chr9 105454624 105454678 -12407949 + L2 LINE L2 3152 3200 -72 1202 163 95 80 chr9 105456890 105457302 -12405325 - Charlie1a DNA MER1_type -6 1449 1032 * 2505 190 125 18 chr9 105457298 105457956 -12404671 - Charlie1a DNA MER1_type -725 730 3 245 307 40 0 chr9 105458350 105458425 -12404202 + MIR3 SINE MIR 130 207 -1 395 335 50 22 chr9 105461073 105461323 -12401304 + MIR SINE MIR 1 259 -3 636 171 9 0 chr9 105461382 105461487 -12401140 + FLAM_C SINE Alu 14 119 -24 180 318 126 13 chr9 105461572 105461723 -12400904 - L2 LINE L2 -461 2853 2686 388 290 130 49 chr9 105461887 105462194 -12400433 + L2 LINE L2 2982 3313 0 320 314 0 0 chr9 105462288 105462412 -12400215 - L1ME LINE L1 -525 5637 5514 3923 169 47 18 chr9 105462426 105462576 -12400051 - L1MB5 LINE L1 0 6174 6030 2261 131 97 5 chr9 105462576 105462966 -12399661 - MSTA LTR MaLR -2 426 1 3923 169 47 18 chr9 105462966 105463456 -12399171 - L1MB5 LINE L1 -144 6030 5502 2289 112 17 0 chr9 105463456 105463751 -12398876 - AluSx SINE Alu -12 300 1 3923 169 47 18 chr9 105463751 105463941 -12398686 - L1MB5 LINE L1 -672 5502 5319 2528 202 22 10 chr9 105463943 105464917 -12397710 - L1MB5 LINE L1 -1107 5039 3912 638 251 35 0 chr9 105464925 105465124 -12397503 - L1MB5 LINE L1 -2295 3851 3646 219 139 0 0 chr9 105465228 105465264 -12397363 + (CCCCCT)n Simple_repeat Simple_repeat 4 39 0 234 143 0 0 chr9 105465265 105465314 -12397313 + (CCG)n Simple_repeat Simple_repeat 2 50 0 21 36 0 0 chr9 105465660 105465688 -12396939 + GC_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr9 105465936 105465967 -12396660 + GC_rich Low_complexity Low_complexity 1 31 0 225 159 0 0 chr9 105467417 105467461 -12395166 + T-rich Low_complexity Low_complexity 1 44 0 27 49 0 0 chr9 105468978 105469019 -12393608 + AT_rich Low_complexity Low_complexity 1 41 0 26 0 0 0 chr9 105469865 105469891 -12392736 + AT_rich Low_complexity Low_complexity 1 26 0 282 240 87 19 chr9 105470895 105470999 -12391628 - L1MC5 LINE L1 -88 7873 7763 21 36 0 0 chr9 105471573 105471601 -12391026 + AT_rich Low_complexity Low_complexity 1 28 0 192 40 0 0 chr9 105473551 105473576 -12389051 + (T)n Simple_repeat Simple_repeat 1 25 0 189 232 29 87 chr9 105476716 105476785 -12385842 - MIR SINE MIR -3 259 195 397 224 182 7 chr9 105476860 105477003 -12385624 - MIR SINE MIR -64 198 31 23 54 0 0 chr9 105478520 105478557 -12384070 + AT_rich Low_complexity Low_complexity 1 37 0 25 0 0 0 chr9 105479565 105479590 -12383037 + AT_rich Low_complexity Low_complexity 1 25 0 2144 75 3 21 chr9 105482798 105482975 -12379652 - AluSc SINE Alu -1 308 129 246 32 0 0 chr9 105482975 105483006 -12379621 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2421 49 0 0 chr9 105483006 105483290 -12379337 - AluY SINE Alu -27 284 1 2144 75 3 21 chr9 105483290 105483393 -12379234 - AluSc SINE Alu -178 131 32 235 310 17 0 chr9 105483637 105483695 -12378932 - L2 LINE L2 -219 3053 2995 232 289 0 0 chr9 105483752 105483842 -12378785 - L1MC4 LINE L1 -1339 6703 6614 1131 89 30 24 chr9 105483853 105484021 -12378606 - AluSg/x SINE Alu -10 300 132 2345 98 0 0 chr9 105484021 105484318 -12378309 - AluSc SINE Alu -12 297 1 264 223 194 29 chr9 105484501 105484604 -12378023 + MLT1H LTR MaLR 382 501 -48 439 281 235 0 chr9 105484733 105484886 -12377741 - MIR SINE MIR -3 259 71 602 103 10 0 chr9 105484901 105484998 -12377629 - AluY SINE Alu -1 310 213 335 281 0 0 chr9 105485151 105485265 -12377362 + L1M4 LINE L1 1188 1301 -5241 2105 126 7 0 chr9 105485278 105485579 -12377048 + AluSq SINE Alu 8 310 -3 2286 219 47 17 chr9 105485652 105486447 -12376180 + L1M4 LINE L1 1491 2417 -4229 2022 139 80 6 chr9 105486447 105486786 -12375841 + THE1B LTR MaLR 1 364 0 2286 219 47 17 chr9 105486786 105486985 -12375642 + L1M4 LINE L1 2417 2608 -4038 1022 203 23 0 chr9 105486965 105487231 -12375396 + L1M4 LINE L1 3445 3716 -2928 * 213 59 0 59 chr9 105487236 105487287 -12375340 + (TCTCCC)n Simple_repeat Simple_repeat 1 48 0 5724 72 21 56 chr9 105487287 105488186 -12374441 + SVA Other Other 1 868 -518 1199 184 40 5 chr9 105488480 105488703 -12373924 - AluJo SINE Alu -81 231 1 373 83 0 0 chr9 105488814 105488874 -12373753 + AluSp/q SINE Alu 244 303 0 687 272 21 41 chr9 105488877 105489120 -12373507 + L3b LINE CR1 1174 1411 -172 854 223 21 5 chr9 105489204 105489397 -12373230 + MIR SINE MIR 59 254 -8 189 129 97 0 chr9 105489631 105489662 -12372965 + MIR SINE MIR 195 228 -34 2184 58 94 0 chr9 105489715 105489991 -12372636 - AluY SINE Alu -9 302 1 2127 133 0 0 chr9 105489991 105490283 -12372344 - AluSx SINE Alu -18 294 2 2270 70 3 38 chr9 105491345 105491660 -12370967 + AluY SINE Alu 2 305 -6 744 181 8 0 chr9 105491675 105491802 -12370825 + AluSq/x SINE Alu 3 130 -182 2260 89 0 7 chr9 105491953 105492245 -12370382 - AluSc SINE Alu -19 290 1 502 272 57 32 chr9 105492245 105492403 -12370224 - MIR SINE MIR -99 163 2 489 250 58 103 chr9 105492443 105492735 -12369892 - MLT1J LTR MaLR -2 509 231 1305 264 92 60 chr9 105492803 105493432 -12369195 - MER21B LTR ERV1 -189 674 26 219 147 0 0 chr9 105493477 105493511 -12369116 - L2 LINE L2 -26 3246 3213 489 71 0 0 chr9 105493514 105493584 -12369043 + (TCCA)n Simple_repeat Simple_repeat 3 72 0 279 322 90 0 chr9 105493614 105493791 -12368836 - MLT1L LTR MaLR -15 600 408 2465 67 0 10 chr9 105493805 105494119 -12368508 - AluY SINE Alu 0 311 1 246 277 0 31 chr9 105494173 105494238 -12368389 - L2 LINE L2 -8 3305 3243 261 318 34 0 chr9 105494421 105494509 -12368118 - MIR SINE MIR -133 129 39 2264 108 0 0 chr9 105494582 105494878 -12367749 - AluSx SINE Alu -16 296 1 586 125 0 0 chr9 105495311 105495423 -12367204 + AluY SINE Alu 196 307 -4 1930 151 11 71 chr9 105495427 105495575 -12367052 - L1MC3 LINE L1 -55 7730 7575 2411 62 0 20 chr9 105495575 105495879 -12366748 - AluY SINE Alu -13 298 1 1930 151 11 71 chr9 105495879 105496166 -12366461 - L1MC3 LINE L1 -210 7575 7321 377 130 155 0 chr9 105496286 105496399 -12366228 - Alu SINE Alu -4 298 240 1661 169 21 14 chr9 105496855 105497145 -12365482 + AluJo SINE Alu 3 294 -18 405 143 79 0 chr9 105497453 105497553 -12365074 - AluSg/x SINE Alu 0 316 212 810 247 6 0 chr9 105497816 105497978 -12364649 - FAM SINE Alu -12 163 1 353 327 115 14 chr9 105497992 105498209 -12364418 + MIR SINE MIR 9 247 -15 2120 103 3 3 chr9 105498956 105499257 -12363370 - AluSg SINE Alu 0 310 10 224 227 0 0 chr9 105499417 105499461 -12363166 - MIR3 SINE MIR 0 208 165 293 190 36 29 chr9 105500075 105500212 -12362415 + CT-rich Low_complexity Low_complexity 3 140 0 354 169 0 0 chr9 105500369 105500434 -12362193 - MLT1F LTR MaLR 0 542 478 2216 94 3 0 chr9 105500437 105500734 -12361893 + AluSq SINE Alu 1 298 -15 435 289 30 0 chr9 105500798 105500933 -12361694 - MIR SINE MIR -17 245 107 224 217 87 0 chr9 105500989 105501035 -12361592 - MIR SINE MIR -160 102 53 1834 145 19 13 chr9 105501054 105501364 -12361263 + AluSx SINE Alu 1 312 0 2323 77 0 7 chr9 105501373 105501671 -12360956 + AluSx SINE Alu 1 296 -16 248 198 17 147 chr9 105501723 105501839 -12360788 - MIR3 SINE MIR -94 114 14 196 344 82 0 chr9 105501834 105501895 -12360732 + L2 LINE L2 3018 3083 -189 * 2251 133 40 0 chr9 105501936 105502312 -12360315 - L1MB3 LINE L1 0 6183 5793 1956 123 0 3 chr9 105502312 105502605 -12360022 + AluSp SINE Alu 1 292 -21 258 32 0 0 chr9 105502605 105502636 -12359991 + (GA)n Simple_repeat Simple_repeat 2 32 0 1323 142 0 14 chr9 105502636 105502855 -12359772 + AluSc SINE Alu 77 292 -17 1273 115 19 29 chr9 105502857 105502962 -12359665 - L1MB3 LINE L1 -384 5799 5695 2451 111 105 5 chr9 105502962 105503351 -12359276 + MSTA LTR MaLR 1 428 0 1273 115 19 29 chr9 105503351 105503454 -12359173 - L1MB3 LINE L1 -488 5695 5593 2196 108 3 3 chr9 105503477 105503783 -12358844 + AluSq SINE Alu 1 306 -7 1712 168 0 17 chr9 105503889 105504180 -12358447 - AluJb SINE Alu -24 288 3 253 119 0 102 chr9 105504210 105504269 -12358358 - L1MC3 LINE L1 -1034 6751 6699 1998 110 0 13 chr9 105504417 105504718 -12357909 + AluSx SINE Alu 1 297 -15 1859 137 10 13 chr9 105504731 105505038 -12357589 + AluSx SINE Alu 3 308 -4 1789 146 33 3 chr9 105505093 105505394 -12357233 - AluSx SINE Alu -2 310 1 207 333 11 43 chr9 105505516 105505609 -12357018 - MIR SINE MIR -57 151 62 1955 113 0 0 chr9 105505706 105506027 -12356600 - AluY SINE Alu 0 321 1 278 186 84 181 chr9 105506227 105506453 -12356174 - Charlie8 DNA MER1_type 0 2417 127 2159 118 3 0 chr9 105506600 105506905 -12355722 - AluSx SINE Alu -6 306 1 245 245 0 0 chr9 105607404 105607453 -12255174 + GA-rich Low_complexity Low_complexity 1 49 0 2349 86 0 0 chr9 105607544 105607846 -12254781 + AluSx SINE Alu 1 302 -10 1872 120 3 65 chr9 105607850 105608159 -12254468 + AluSx SINE Alu 1 290 -22 306 221 92 76 chr9 105608589 105608720 -12253907 + MLT1L LTR MaLR 96 228 -387 2345 82 0 13 chr9 105608767 105609071 -12253556 - AluY SINE Alu -11 300 1 2014 115 0 0 chr9 105609081 105609351 -12253276 - AluSx SINE Alu -20 292 23 414 320 75 7 chr9 105609497 105609644 -12252983 - MIR SINE MIR -90 172 16 2010 113 3 3 chr9 105609866 105610157 -12252470 + AluSx SINE Alu 6 296 -16 1604 159 3 74 chr9 105610167 105610493 -12252134 + AluJo SINE Alu 6 308 -4 935 110 0 22 chr9 105610493 105610629 -12251998 + FLAM_C SINE Alu 1 133 0 246 253 35 92 chr9 105610657 105610744 -12251883 + MER5A DNA MER1_type 75 156 -33 436 260 0 0 chr9 105610759 105610855 -12251772 + L2 LINE L2 2225 2320 -994 894 159 41 12 chr9 105610857 105611011 -12251616 - AluSg/x SINE Alu -18 294 133 2191 100 7 0 chr9 105611011 105611301 -12251326 - AluSq SINE Alu -21 292 1 894 159 41 12 chr9 105611301 105611316 -12251311 - AluSg/x SINE Alu -179 133 120 639 225 111 116 chr9 105611316 105611708 -12250919 + L2 LINE L2 2618 3011 -302 2261 89 0 16 chr9 105611708 105612021 -12250606 - AluSg1 SINE Alu 0 309 2 2023 146 0 0 chr9 105612025 105612319 -12250308 - AluSx SINE Alu -18 294 1 639 225 111 116 chr9 105612319 105612633 -12249994 + L2 LINE L2 3014 3312 -1 253 284 129 26 chr9 105613458 105613574 -12249053 - MIR3 SINE MIR -71 137 10 1299 102 0 0 chr9 105613655 105613831 -12248796 + AluSg/x SINE Alu 120 295 -17 192 152 0 0 chr9 105613831 105613864 -12248763 + (TA)n Simple_repeat Simple_repeat 1 33 0 234 235 99 0 chr9 105613864 105613945 -12248682 + L1MC4 LINE L1 6614 6702 -1340 323 371 0 0 chr9 105613953 105614042 -12248585 - L1MC4 LINE L1 -1340 6702 6614 354 344 0 0 chr9 105614054 105614144 -12248483 + L1MC4 LINE L1 6614 6703 -1339 * 356 337 0 11 chr9 105614064 105614159 -12248468 - L1MC4 LINE L1 -1339 6703 6610 1726 142 25 3 chr9 105614161 105614443 -12248184 + AluJo SINE Alu 1 288 -24 451 229 8 9 chr9 105614449 105614563 -12248064 - L1MCa LINE L1 -1339 6983 1995 355 235 11 77 chr9 105615079 105615224 -12247403 + (CAGAGA)n Simple_repeat Simple_repeat 2 134 -38 2060 118 0 28 chr9 105615224 105615357 -12247270 + AluSx SINE Alu 1 136 -176 2284 85 3 22 chr9 105615357 105615674 -12246953 + AluSq SINE Alu 1 311 -2 2060 118 0 28 chr9 105615674 105615861 -12246766 + AluSx SINE Alu 136 312 0 355 235 11 77 chr9 105615861 105615898 -12246729 + (CAGAGA)n Simple_repeat Simple_repeat 134 172 0 367 297 36 43 chr9 105616322 105616460 -12246167 - MIR SINE MIR -35 227 91 1984 131 0 27 chr9 105616471 105616608 -12246019 + AluSx SINE Alu 1 140 -172 1957 112 7 11 chr9 105616608 105616920 -12245707 + AluSx SINE Alu 1 311 0 1984 131 0 27 chr9 105616920 105617079 -12245548 + AluSx SINE Alu 140 290 -22 249 330 93 0 chr9 105617096 105617214 -12245413 + MIR SINE MIR 23 151 -57 318 318 9 0 chr9 105618079 105618215 -12244412 - MIR SINE MIR -78 130 33 433 102 0 0 chr9 105618245 105618304 -12244323 - AluSg/q SINE Alu -15 298 240 1589 72 51 59 chr9 105618495 105618599 -12244028 - AluSg SINE Alu -75 235 132 2530 36 3 3 chr9 105618599 105618903 -12243724 - AluY SINE Alu -7 304 1 1589 72 51 59 chr9 105618903 105619035 -12243592 - AluSg SINE Alu -178 132 1 2107 118 0 7 chr9 105619214 105619520 -12243107 + AluJb SINE Alu 1 304 -8 2098 138 0 0 chr9 105619575 105619879 -12242748 + AluSx SINE Alu 1 304 -8 290 232 95 11 chr9 105620082 105620177 -12242450 + L2 LINE L2 2876 2978 -335 248 288 38 12 chr9 105620343 105620423 -12242204 + L2 LINE L2 3227 3308 -5 1834 95 46 19 chr9 105620904 105621167 -12241460 - AluSq SINE Alu -43 270 1 1457 150 0 124 chr9 105621365 105621489 -12241138 + AluJo SINE Alu 5 143 -169 2014 116 10 17 chr9 105621489 105621782 -12240845 - AluSq SINE Alu -22 291 1 1457 150 0 124 chr9 105621782 105621803 -12240824 + AluJo SINE Alu 143 165 -147 1508 153 10 55 chr9 105621803 105622110 -12240517 + AluSx SINE Alu 5 297 -15 1457 150 0 124 chr9 105622110 105622302 -12240325 + AluJo SINE Alu 165 301 -11 355 290 136 7 chr9 105622501 105622656 -12239971 - MIR SINE MIR -67 195 21 187 323 0 31 chr9 105622712 105622777 -12239850 - L3 LINE CR1 -89 1488 1426 409 283 17 8 chr9 105623256 105623376 -12239251 - MIR3 SINE MIR -29 179 59 285 250 137 73 chr9 105623661 105623785 -12238842 + MIR3 SINE MIR 52 183 -25 262 282 204 14 chr9 105623792 105623934 -12238693 - L2 LINE L2 -1 3271 3103 2113 134 0 3 chr9 105624113 105624419 -12238208 - AluSx SINE Alu -7 305 1 2219 119 0 0 chr9 105624488 105624799 -12237828 + AluSx SINE Alu 1 311 -1 243 315 14 0 chr9 105624803 105624876 -12237751 + L2 LINE L2 3199 3272 0 2312 72 14 0 chr9 105625266 105625558 -12237069 - AluY SINE Alu -15 296 1 1532 165 3 76 chr9 105625591 105625797 -12236830 - AluJo SINE Alu -8 304 84 1829 125 62 7 chr9 105625797 105626085 -12236542 + AluJb SINE Alu 1 304 -8 2204 117 3 0 chr9 105626090 105626399 -12236228 + AluSp SINE Alu 1 310 -3 1532 165 3 76 chr9 105626399 105626514 -12236113 - AluJo SINE Alu -232 80 1 2321 42 7 0 chr9 105626546 105626855 -12235772 + AluY SINE Alu 1 311 0 1815 83 8 4 chr9 105626879 105627121 -12235506 + AluSq SINE Alu 1 243 -70 228 217 0 58 chr9 105627183 105627252 -12235375 - L2 LINE L2 -284 2988 2924 2249 117 0 0 chr9 105628257 105628566 -12234061 - AluSq SINE Alu -4 309 1 330 296 100 2 chr9 105629140 105629280 -12233347 + MIR SINE MIR 1 145 -63 2225 100 0 0 chr9 105629325 105629615 -12233012 - AluSx SINE Alu -22 290 1 21 0 0 0 chr9 105630750 105630771 -12231856 + GC_rich Low_complexity Low_complexity 1 21 0 27 62 0 0 chr9 105631062 105631110 -12231517 + GC_rich Low_complexity Low_complexity 1 48 0 2317 73 10 0 chr9 105631733 105632033 -12230594 + AluSx SINE Alu 1 303 -9 210 365 15 44 chr9 105632285 105632422 -12230205 + MIR SINE MIR 110 242 -20 1360 155 30 185 chr9 105632920 105633008 -12229619 + MLT1A1 LTR MaLR 1 101 -264 2418 52 0 7 chr9 105633008 105633314 -12229313 + AluY SINE Alu 6 309 -2 1360 155 30 185 chr9 105633314 105633404 -12229223 + MLT1A1 LTR MaLR 101 203 -162 2295 96 0 0 chr9 105633404 105633697 -12228930 + AluSc SINE Alu 1 293 -16 1360 155 30 185 chr9 105633697 105633876 -12228751 + MLT1A1 LTR MaLR 203 283 -82 1472 126 0 5 chr9 105633876 105634083 -12228544 - AluSx SINE Alu -106 206 1 1360 155 30 185 chr9 105634083 105634155 -12228472 + MLT1A1 LTR MaLR 283 365 0 184 278 113 73 chr9 105634320 105634434 -12228193 + L2 LINE L2 1214 1322 -1992 1838 150 0 11 chr9 105634434 105634564 -12228063 + AluSx SINE Alu 6 136 -177 2244 89 6 16 chr9 105634564 105634880 -12227747 + AluSp SINE Alu 1 313 0 1838 150 0 11 chr9 105634880 105635060 -12227567 + AluSx SINE Alu 136 313 0 184 278 113 73 chr9 105635060 105635192 -12227435 + L2 LINE L2 1322 1471 -1843 3325 157 39 88 chr9 105635241 105635902 -12226725 + LTR8 LTR ERV1 1 624 -67 2420 37 41 0 chr9 105635902 105636197 -12226430 - AluY SINE Alu -4 307 1 3325 157 39 88 chr9 105636197 105636262 -12226365 + LTR8 LTR ERV1 624 691 0 184 350 109 23 chr9 105636267 105636487 -12226140 + L2 LINE L2 1609 1847 -1467 1552 125 47 35 chr9 105636557 105636813 -12225814 - AluJo SINE Alu -53 259 1 251 281 51 83 chr9 105636866 105637083 -12225544 + L2 LINE L2 2767 2976 -338 917 287 134 20 chr9 105637203 105637425 -12225202 - L2 LINE L2 -3 3310 3115 1928 164 3 0 chr9 105637425 105637736 -12224891 + AluSx SINE Alu 1 312 0 917 287 134 20 chr9 105637736 105638000 -12224627 - L2 LINE L2 -198 3115 2783 2180 108 0 3 chr9 105638000 105638305 -12224322 - AluSx SINE Alu -8 304 1 2163 106 0 0 chr9 105638336 105638628 -12223999 - AluSg SINE Alu -1 309 18 1271 103 10 31 chr9 105638631 105638825 -12223802 + AluSg/x SINE Alu 111 300 -10 2211 78 30 3 chr9 105638827 105639122 -12223505 + AluSp SINE Alu 3 305 -8 551 209 45 119 chr9 105640696 105640753 -12221874 - MIR SINE MIR 0 262 202 2001 100 21 24 chr9 105640753 105641044 -12221583 - AluSx SINE Alu -22 290 1 551 209 45 119 chr9 105641044 105641107 -12221520 - MIR SINE MIR -60 202 136 2126 138 0 0 chr9 105641107 105641412 -12221215 - AluSx SINE Alu -7 305 1 551 209 45 119 chr9 105641412 105641534 -12221093 - MIR SINE MIR -126 136 37 181 244 22 0 chr9 105641615 105641660 -12220967 + MIR SINE MIR 103 148 -114 557 339 9 27 chr9 105641773 105641994 -12220633 + MIR SINE MIR 46 262 0 219 320 52 10 chr9 105642015 105642112 -12220515 + L2 LINE L2 3167 3267 -5 218 292 75 17 chr9 105642128 105642248 -12220379 - MIR SINE MIR -127 135 9 544 284 22 0 chr9 105643018 105643152 -12219475 + MIR3 SINE MIR 21 157 -51 432 335 17 52 chr9 105643436 105643666 -12218961 - MIR SINE MIR -19 243 22 2203 81 0 3 chr9 105643807 105644134 -12218493 - AluSg SINE Alu 0 326 1 319 114 0 5 chr9 105644172 105644369 -12218258 + AluJb SINE Alu 11 298 -4 470 329 105 14 chr9 105644490 105644700 -12217927 + MIR SINE MIR 2 230 -32 815 137 0 0 chr9 105645322 105645439 -12217188 + FLAM_C SINE Alu 1 117 -26 23 33 0 0 chr9 105645439 105645469 -12217158 + AT_rich Low_complexity Low_complexity 1 30 0 404 293 23 15 chr9 105647425 105647558 -12215069 + MIR SINE MIR 34 167 -95 * 439 213 113 21 chr9 105647542 105647683 -12214944 - MIR SINE MIR -59 203 50 2126 93 19 26 chr9 105647689 105647999 -12214628 - AluY SINE Alu -1 310 3 249 111 0 0 chr9 105647999 105648035 -12214592 - Alu SINE Alu -266 36 1 1465 138 13 84 chr9 105648041 105648199 -12214428 - L1MB8 LINE L1 0 6178 6048 2059 105 0 11 chr9 105648199 105648508 -12214119 + AluSx SINE Alu 1 306 0 1465 138 13 84 chr9 105648508 105648646 -12213981 - L1MB8 LINE L1 -130 6048 5902 1345 159 9 0 chr9 105648657 105648877 -12213750 - AluJo SINE Alu -16 296 75 2347 97 3 0 chr9 105649017 105649325 -12213302 + AluSp SINE Alu 1 309 -4 703 180 0 0 chr9 105649336 105649447 -12213180 + AluJo/FLAM SINE Alu 1 111 -201 1524 104 0 9 chr9 105649448 105649668 -12212959 - AluSg/x SINE Alu -6 306 89 1829 169 0 3 chr9 105649673 105649974 -12212653 - AluSx SINE Alu -12 300 1 24 0 0 0 chr9 105649988 105650012 -12212615 + AT_rich Low_complexity Low_complexity 1 24 0 2055 102 56 0 chr9 105650016 105650300 -12212327 + AluSq SINE Alu 3 302 -11 492 271 164 0 chr9 105650316 105650493 -12212134 + MIR SINE MIR 57 262 0 2498 74 0 0 chr9 105650577 105650888 -12211739 + AluY SINE Alu 1 311 0 2241 75 0 0 chr9 105650908 105651190 -12211437 + AluSq SINE Alu 1 306 0 217 0 0 0 chr9 105651190 105651214 -12211413 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 352 286 111 29 chr9 105651216 105651387 -12211240 - L2 LINE L2 -23 3290 3106 239 54 27 0 chr9 105652142 105652179 -12210448 + (TTCA)n Simple_repeat Simple_repeat 1 38 0 2141 105 13 3 chr9 105652241 105652546 -12210081 + AluSx SINE Alu 1 308 -4 189 0 0 0 chr9 105652559 105652580 -12210047 + (CAGGC)n Simple_repeat Simple_repeat 4 24 0 1975 128 32 0 chr9 105652581 105652862 -12209765 + AluSx SINE Alu 9 298 -14 2151 83 31 3 chr9 105652862 105653152 -12209475 + AluSc SINE Alu 1 298 -11 2386 71 0 7 chr9 105653209 105653518 -12209109 - AluY SINE Alu -4 307 1 2093 126 10 0 chr9 105653518 105653818 -12208809 - AluSx SINE Alu -9 303 1 481 278 181 43 chr9 105654382 105654765 -12207862 + L2 LINE L2 2579 3013 -300 195 250 0 0 chr9 105654831 105654871 -12207756 + L2 LINE L2 3271 3310 -3 753 158 0 30 chr9 105654965 105655098 -12207529 + FLAM_A SINE Alu 1 129 -4 2428 64 0 0 chr9 105655108 105655405 -12207222 + AluY SINE Alu 1 297 -14 2477 53 0 10 chr9 105655482 105655785 -12206842 - AluY SINE Alu -11 300 1 26 30 0 0 chr9 105655797 105655830 -12206797 + AT_rich Low_complexity Low_complexity 1 33 0 2030 128 3 0 chr9 105655830 105656127 -12206500 + AluSx SINE Alu 1 298 -14 476 176 19 164 chr9 105656129 105656181 -12206446 - AluJo SINE Alu -174 138 80 2018 121 13 0 chr9 105656181 105656486 -12206141 - AluSx SINE Alu 0 312 4 476 176 19 164 chr9 105656486 105656592 -12206035 - AluJo SINE Alu -232 80 3 566 208 92 0 chr9 105656972 105657102 -12205525 + MIR SINE MIR 121 262 0 181 344 89 0 chr9 105657273 105657363 -12205264 - L2 LINE L2 -13 3259 3162 228 317 63 42 chr9 105657618 105657760 -12204867 - L2 LINE L2 -4 3309 3165 224 204 0 0 chr9 105658679 105658728 -12203899 + (CCG)n Simple_repeat Simple_repeat 3 51 0 490 289 47 33 chr9 105662828 105663039 -12199588 + MIR SINE MIR 24 237 -25 351 238 99 10 chr9 105663577 105663678 -12198949 - MER3 DNA MER1_type 0 209 100 402 233 12 0 chr9 105663706 105663792 -12198835 - MIR SINE MIR -82 126 40 305 271 107 25 chr9 105666440 105666562 -12196065 - L2 LINE L2 -2 3311 3180 186 103 0 0 chr9 105666982 105667011 -12195616 + (GGGA)n Simple_repeat Simple_repeat 1 29 0 678 268 83 15 chr9 105667013 105667218 -12195409 + MIR SINE MIR 13 231 -31 391 300 157 24 chr9 105667701 105667911 -12194716 + MIR SINE MIR 13 250 -12 770 258 137 0 chr9 105668188 105668436 -12194191 - L3 LINE CR1 -103 1474 1193 313 331 0 66 chr9 105670054 105670190 -12192437 + MIR SINE MIR 1 127 -135 2077 84 44 7 chr9 105670194 105670491 -12192136 - AluSx SINE Alu -4 308 1 511 271 123 52 chr9 105670496 105670765 -12191862 + L2 LINE L2 3025 3312 -1 2515 58 0 0 chr9 105670782 105671093 -12191534 + AluY SINE Alu 1 311 0 1269 138 0 0 chr9 105671094 105671282 -12191345 + AluSg/x SINE Alu 123 310 0 1762 177 7 3 chr9 105671779 105672073 -12190554 - AluJo SINE Alu -15 297 3 264 30 0 0 chr9 105672073 105672106 -12190521 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 2093 85 3 11 chr9 105672106 105672388 -12190239 - AluSg SINE Alu -30 280 1 2154 118 10 0 chr9 105672401 105672706 -12189921 - AluSq SINE Alu -5 308 1 306 283 38 19 chr9 105672920 105672935 -12189692 + L2 LINE L2 3160 3173 -99 1984 134 30 3 chr9 105672935 105673234 -12189393 - AluSx SINE Alu -5 307 1 306 283 38 19 chr9 105673234 105673324 -12189303 + L2 LINE L2 3173 3267 -5 2409 79 0 19 chr9 105673334 105673650 -12188977 - AluSg SINE Alu 0 310 1 1587 169 3 115 chr9 105674022 105674215 -12188412 - AluJo SINE Alu 0 302 162 1935 130 33 0 chr9 105674215 105674516 -12188111 - AluSx SINE Alu -1 311 1 1587 169 3 115 chr9 105674516 105674660 -12187967 - AluJo SINE Alu -140 162 3 621 149 0 119 chr9 105674735 105674869 -12187758 + FLAM_C SINE Alu 1 118 -25 1755 197 3 0 chr9 105674902 105675202 -12187425 - AluJb SINE Alu -11 301 1 2115 113 0 35 chr9 105675210 105675529 -12187098 - AluSg1 SINE Alu -1 308 1 1594 168 49 11 chr9 105675531 105675816 -12186811 - AluJo SINE Alu -16 296 1 21 36 0 0 chr9 105675823 105675851 -12186776 + AT_rich Low_complexity Low_complexity 1 28 0 248 366 16 8 chr9 105675904 105676027 -12186600 + MIR SINE MIR 2 125 -137 1805 162 0 14 chr9 105676043 105676333 -12186294 + AluJb SINE Alu 1 286 -26 824 167 7 22 chr9 105676340 105676478 -12186149 - AluJo SINE Alu -176 136 1 281 282 32 83 chr9 105676724 105676880 -12185747 - MIR SINE MIR -66 196 49 340 231 0 96 chr9 105678003 105678107 -12184520 + L2 LINE L2 3219 3312 -1 225 0 0 0 chr9 105678708 105678733 -12183894 + (TGGG)n Simple_repeat Simple_repeat 2 26 0 199 295 77 13 chr9 105678829 105678907 -12183720 + L2 LINE L2 3150 3232 -40 863 173 0 0 chr9 105678982 105679115 -12183512 - FLAM_C SINE Alu 0 133 1 387 276 48 0 chr9 105679359 105679464 -12183163 + L2 LINE L2 3158 3267 -5 230 148 19 0 chr9 105679584 105679638 -12182989 + (CA)n Simple_repeat Simple_repeat 2 56 0 261 98 0 0 chr9 105680662 105680703 -12181924 + (GGGGA)n Simple_repeat Simple_repeat 4 44 0 329 300 107 0 chr9 105680892 105681042 -12181585 + L2 LINE L2 2155 2320 -994 * 416 352 55 23 chr9 105681040 105681259 -12181368 - L2 LINE L2 -2 3311 3086 457 337 97 34 chr9 105681317 105681673 -12180954 - L2 LINE L2 -342 2972 2640 2300 75 0 7 chr9 105681673 105681968 -12180659 + AluSc SINE Alu 1 293 -16 457 337 97 34 chr9 105681968 105681994 -12180633 - L2 LINE L2 -674 2640 2617 1949 121 17 10 chr9 105681994 105682284 -12180343 + AluSg SINE Alu 1 292 -18 457 337 97 34 chr9 105682284 105682312 -12180315 - L2 LINE L2 -697 2617 2535 667 229 0 0 chr9 105682425 105682543 -12180084 + AluJ SINE Alu 5 122 -180 845 169 35 0 chr9 105682551 105682693 -12179934 + AluJ SINE Alu 128 274 -38 1339 158 4 93 chr9 105682694 105682973 -12179654 - AluJb SINE Alu -58 254 1 2058 120 3 0 chr9 105682982 105683274 -12179353 - AluSg SINE Alu -17 293 1 28 0 0 0 chr9 105683283 105683311 -12179316 + AT_rich Low_complexity Low_complexity 1 28 0 1344 149 169 4 chr9 105683355 105683616 -12179011 + AluSx SINE Alu 1 304 -8 720 179 22 0 chr9 105683623 105683757 -12178870 + MIR SINE MIR 58 194 -68 1752 92 111 4 chr9 105683794 105684065 -12178562 + AluSx SINE Alu 1 300 -12 2388 67 7 0 chr9 105684191 105684488 -12178139 - AluY SINE Alu -12 299 1 194 265 235 0 chr9 105684607 105684709 -12177918 - L2 LINE L2 -4 3309 3184 279 176 77 55 chr9 105684760 105684851 -12177776 + MIR3 SINE MIR 109 201 -7 221 379 48 0 chr9 105684848 105684972 -12177655 + L2 LINE L2 3184 3313 0 * 212 353 41 16 chr9 105684978 105685100 -12177527 + L2 LINE L2 2716 2840 -474 462 290 13 133 chr9 105685157 105685250 -12177377 - L2 LINE L2 -1 3271 3168 2459 38 0 38 chr9 105685250 105685600 -12177027 + AluY SINE Alu 1 311 0 2034 107 17 0 chr9 105685610 105685900 -12176727 + AluSx SINE Alu 1 295 -17 462 290 13 133 chr9 105685900 105686112 -12176515 - L2 LINE L2 -114 3158 2993 324 298 46 8 chr9 105686138 105686269 -12176358 - L3 LINE CR1 -75 1502 1367 321 322 199 0 chr9 105686334 105686480 -12176147 - MIR SINE MIR -6 256 82 579 189 20 153 chr9 105687162 105687322 -12175305 + MIR SINE MIR 1 106 -156 2360 76 3 0 chr9 105687322 105687623 -12175004 + AluSq SINE Alu 1 302 -11 579 189 20 153 chr9 105687623 105687760 -12174867 + MIR SINE MIR 106 260 -2 1947 99 17 17 chr9 105687908 105688200 -12174427 - AluSx SINE Alu -20 292 1 2207 87 13 0 chr9 105688484 105688783 -12173844 + AluSp SINE Alu 1 303 -10 571 260 178 9 chr9 105689103 105689322 -12173305 - MIR SINE MIR -5 257 2 243 205 273 4 chr9 105690378 105690483 -12172144 - MIR SINE MIR -63 145 3 431 262 25 33 chr9 105691774 105691896 -12170731 - MIR3 SINE MIR -50 158 38 283 185 261 39 chr9 105691979 105692087 -12170540 + MER104 DNA Tc2 1 144 -1754 1801 175 0 13 chr9 105692087 105692254 -12170373 - AluJb SINE Alu -13 299 136 2242 109 0 3 chr9 105692254 105692567 -12170060 - AluSx SINE Alu 0 312 1 1801 175 0 13 chr9 105692567 105692702 -12169925 - AluJb SINE Alu -176 136 1 283 185 261 39 chr9 105692702 105692723 -12169904 + MER104 DNA Tc2 144 159 -21 1029 276 42 74 chr9 105692797 105693110 -12169517 + MLT1H LTR MaLR 17 306 -243 740 145 56 171 chr9 105693110 105693162 -12169465 - MER3 DNA MER1_type -2 207 151 2148 110 0 10 chr9 105693162 105693462 -12169165 + AluSx SINE Alu 1 297 -15 740 145 56 171 chr9 105693462 105693643 -12168984 - MER3 DNA MER1_type -58 151 1 1029 276 42 74 chr9 105693643 105693880 -12168747 + MLT1H LTR MaLR 306 549 0 658 308 56 55 chr9 105694315 105694460 -12168167 + L2 LINE L2 2597 2740 -573 1293 156 3 132 chr9 105694460 105694794 -12167833 - AluJo SINE Alu -21 291 1 2099 129 0 7 chr9 105694796 105695099 -12167528 - AluSx SINE Alu -11 301 1 1361 152 111 35 chr9 105695102 105695391 -12167236 - AluSx SINE Alu -1 311 1 658 308 56 55 chr9 105695391 105695936 -12166691 + L2 LINE L2 2741 3293 -20 2159 103 3 19 chr9 105696932 105697243 -12165384 - AluSq SINE Alu -7 306 1 462 350 49 0 chr9 105697430 105697633 -12164994 - MIR SINE MIR -21 241 29 1337 154 0 0 chr9 105697665 105697866 -12164761 + AluSx SINE Alu 1 201 -111 2729 7 0 0 chr9 105697866 105698168 -12164459 + AluYa5 SINE Alu 1 302 -9 183 184 0 0 chr9 105698201 105698239 -12164388 + (TGAA)n Simple_repeat Simple_repeat 2 39 0 206 325 0 26 chr9 105698979 105699056 -12163571 + MIR3 SINE MIR 93 167 -41 2381 52 0 29 chr9 105699698 105700004 -12162623 - AluY SINE Alu -14 297 1 1309 114 108 160 chr9 105700014 105700176 -12162451 - AluSx SINE Alu -11 291 122 2043 117 21 0 chr9 105700176 105700466 -12162161 - AluSg SINE Alu -14 296 1 1422 161 9 96 chr9 105700468 105700790 -12161837 - AluJo SINE Alu -16 296 3 2249 98 0 7 chr9 105700794 105701099 -12161528 - AluY SINE Alu -8 303 1 1309 114 108 160 chr9 105701099 105701235 -12161392 - AluSx SINE Alu -184 118 1 499 335 60 6 chr9 105701762 105701944 -12160683 - L2 LINE L2 -3 3269 3078 209 244 115 0 chr9 105702267 105702345 -12160282 - L2 LINE L2 -30 3283 3197 493 341 57 16 chr9 105702397 105702643 -12159984 - MIR SINE MIR -1 261 6 292 283 132 26 chr9 105702964 105703116 -12159511 - MIR SINE MIR -19 243 76 313 344 101 5 chr9 105703561 105703750 -12158877 - MIR SINE MIR -53 209 3 888 112 0 70 chr9 105704025 105704168 -12158459 - FLAM_C SINE Alu 0 133 1 1881 130 56 0 chr9 105704179 105704464 -12158163 - AluSx SINE Alu -11 301 1 422 281 67 36 chr9 105704514 105704721 -12157906 + MIR SINE MIR 8 228 -34 1918 125 10 20 chr9 105704893 105705189 -12157438 - AluSx SINE Alu -19 293 1 1713 137 3 108 chr9 105705189 105705375 -12157252 - AluJo SINE Alu -2 300 96 2376 80 0 6 chr9 105705375 105705687 -12156940 + AluSg SINE Alu 1 310 0 1713 137 3 108 chr9 105705687 105705708 -12156919 - AluJo SINE Alu -206 96 74 1790 180 0 0 chr9 105705708 105705997 -12156630 + AluJb SINE Alu 1 289 -23 1713 137 3 108 chr9 105705997 105706123 -12156504 - AluJo SINE Alu -228 74 1 313 241 167 1 chr9 105706160 105706279 -12156348 - MIR SINE MIR -71 137 3 421 337 32 11 chr9 105706899 105707086 -12155541 - MIR SINE MIR -59 203 13 330 270 123 25 chr9 105707176 105707339 -12155288 + L2 LINE L2 3086 3264 -8 1864 167 3 7 chr9 105707367 105707673 -12154954 - AluSx SINE Alu -7 305 1 254 256 16 96 chr9 105707880 105708005 -12154622 - L2 LINE L2 -7 3265 3151 184 329 61 0 chr9 105708049 105708131 -12154496 + L2 LINE L2 3171 3257 -15 279 262 25 82 chr9 105708995 105709117 -12153510 + MIR SINE MIR 31 145 -63 2243 83 0 0 chr9 105709880 105710169 -12152458 + AluSg SINE Alu 9 297 -13 241 148 68 34 chr9 105711199 105711287 -12151340 + (CCCCG)n Simple_repeat Simple_repeat 4 94 0 21 0 0 0 chr9 105711424 105711445 -12151182 + GC_rich Low_complexity Low_complexity 1 21 0 522 22 0 198 chr9 105711742 105711833 -12150794 + tRNA-Arg-AGA tRNA tRNA 1 73 -3 1042 73 0 0 chr9 105712283 105712420 -12150207 + AluSg/x SINE Alu 174 310 0 1641 163 21 7 chr9 105712432 105712720 -12149907 + AluJo SINE Alu 6 297 -15 1971 132 6 10 chr9 105712720 105713030 -12149597 + AluSx SINE Alu 1 310 -2 2412 47 0 13 chr9 105713291 105713591 -12149036 - AluY SINE Alu -14 297 2 1530 162 58 7 chr9 105713987 105714265 -12148362 - AluJb SINE Alu -10 302 11 353 298 159 28 chr9 105714282 105714331 -12148296 - L2 LINE L2 -153 3160 3119 1497 182 3 50 chr9 105714331 105714465 -12148162 + AluJo SINE Alu 7 146 -166 2096 84 0 50 chr9 105714465 105714785 -12147842 + AluSg SINE Alu 1 304 -6 1980 118 7 0 chr9 105714791 105715112 -12147515 + AluSx SINE Alu 1 323 0 1497 182 3 50 chr9 105715112 105715287 -12147340 + AluJo SINE Alu 151 309 -3 353 298 159 28 chr9 105715287 105715489 -12147138 - L2 LINE L2 -194 3119 2876 304 301 41 24 chr9 105716082 105716205 -12146422 + MIR SINE MIR 111 235 -27 222 365 26 9 chr9 105716280 105716395 -12146232 + MIR3 SINE MIR 86 202 -6 1302 205 50 37 chr9 105716550 105716681 -12145946 + AluJb SINE Alu 1 129 -173 2050 134 0 3 chr9 105716681 105716994 -12145633 + AluSq SINE Alu 1 312 -1 1302 205 50 37 chr9 105716994 105717159 -12145468 + AluJb SINE Alu 129 301 -1 320 242 9 97 chr9 105717219 105717342 -12145285 - MIR SINE MIR -67 141 78 2094 91 11 0 chr9 105717342 105717660 -12144967 + AluSc SINE Alu 1 321 0 320 242 9 97 chr9 105717660 105717700 -12144927 - MIR SINE MIR -130 78 36 513 297 36 15 chr9 105718477 105718672 -12143955 - MIR SINE MIR -35 227 29 2095 103 13 16 chr9 105719879 105720189 -12142438 + AluSx SINE Alu 1 309 -3 814 167 96 6 chr9 105720189 105720345 -12142282 + AluJo SINE Alu 126 295 -17 779 165 86 121 chr9 105720620 105720772 -12141855 + MER33 DNA MER1_type 1 149 -2436 2492 56 0 0 chr9 105720772 105721075 -12141552 + AluY SINE Alu 1 303 -8 779 165 86 121 chr9 105721075 105721144 -12141483 + MER33 DNA MER1_type 149 219 -2366 1696 129 107 0 chr9 105721144 105721416 -12141211 + AluSx SINE Alu 1 301 -11 779 165 86 121 chr9 105721416 105721506 -12141121 + MER33 DNA MER1_type 219 295 -2290 2094 121 0 13 chr9 105721506 105721820 -12140807 - AluSg SINE Alu 0 310 1 779 165 86 121 chr9 105721820 105721845 -12140782 + MER33 DNA MER1_type 295 319 -5 211 317 135 10 chr9 105721858 105721962 -12140665 + L2 LINE L2 3197 3313 0 614 236 54 78 chr9 105722120 105722239 -12140388 - MIR SINE MIR -15 247 136 2025 108 44 0 chr9 105722239 105722536 -12140091 + AluSx SINE Alu 1 310 -2 614 236 54 78 chr9 105722536 105722658 -12139969 - MIR SINE MIR -126 136 12 367 350 29 14 chr9 105722695 105722835 -12139792 - MIR SINE MIR -116 146 5 1063 152 86 0 chr9 105723278 105723476 -12139151 + MER20 DNA MER1_type 1 215 -4 539 247 264 22 chr9 105723624 105724092 -12138535 + L2 LINE L2 2693 3275 -38 1862 151 7 14 chr9 105724093 105724385 -12138242 - AluJb SINE Alu -16 296 7 2126 112 7 0 chr9 105724445 105724741 -12137886 - AluSx SINE Alu -9 303 6 319 242 53 42 chr9 105724766 105724861 -12137766 + L2 LINE L2 3175 3270 -43 1915 125 7 0 chr9 105724861 105725160 -12137467 + AluSx SINE Alu 1 301 0 2270 39 28 3 chr9 105725166 105725451 -12137176 + AluY SINE Alu 1 292 -19 444 349 131 4 chr9 105725611 105725840 -12136787 + MIR SINE MIR 5 262 0 326 262 78 19 chr9 105726458 105726561 -12136066 - MER91C DNA MER1_type -24 116 8 199 294 0 15 chr9 105726798 105726866 -12135761 + MIR SINE MIR 84 150 -112 180 263 79 26 chr9 105727060 105727136 -12135491 + MIR SINE MIR 30 109 -99 545 110 0 0 chr9 105727137 105727219 -12135408 - AluJo SINE Alu -7 305 224 871 158 82 6 chr9 105727219 105727377 -12135250 - AluJo SINE Alu -142 170 1 207 370 56 0 chr9 105727377 105727485 -12135142 + MIR SINE MIR 101 214 -48 767 173 22 14 chr9 105727487 105727626 -12135001 + AluJo SINE Alu 2 141 -171 1990 121 17 0 chr9 105727630 105727927 -12134700 + AluSx SINE Alu 1 302 -10 1466 164 56 11 chr9 105727954 105728223 -12134404 - AluJb SINE Alu -20 292 12 519 278 35 18 chr9 105728330 105728499 -12134128 - L2 LINE L2 -2 3311 3140 275 295 16 93 chr9 105728498 105728681 -12133946 + MER5B DNA MER1_type 6 174 -4 * 1023 128 0 0 chr9 105729970 105730119 -12132508 + AluJo SINE Alu 142 290 -22 236 200 20 0 chr9 105730124 105730174 -12132453 + (TATG)n Simple_repeat Simple_repeat 4 54 0 981 211 38 0 chr9 105730436 105730645 -12131982 - MER58B DNA MER1_type 0 341 125 943 132 5 127 chr9 105730788 105730822 -12131805 - MER2 DNA MER2_type -165 180 143 2328 69 0 0 chr9 105730822 105731112 -12131515 + AluSc SINE Alu 1 290 -19 943 132 5 127 chr9 105731112 105731145 -12131482 - MER2 DNA MER2_type -202 143 108 1792 155 3 7 chr9 105731145 105731277 -12131350 + AluJb SINE Alu 1 132 -180 2186 95 10 0 chr9 105731277 105731572 -12131055 + AluSp SINE Alu 1 298 -15 1792 155 3 7 chr9 105731572 105731735 -12130892 + AluJb SINE Alu 132 295 -17 2019 55 0 4 chr9 105731735 105731988 -12130639 + AluY SINE Alu 43 294 -17 1671 140 75 4 chr9 105731990 105732268 -12130359 + AluSx SINE Alu 1 298 -14 943 132 5 127 chr9 105732268 105732400 -12130227 - MER2 DNA MER2_type -237 108 1 1650 156 0 44 chr9 105732405 105732567 -12130060 - AluJb SINE Alu -17 295 150 2496 47 0 0 chr9 105732567 105732864 -12129763 - AluY SINE Alu -14 297 1 1650 156 0 44 chr9 105732864 105732996 -12129631 - AluJb SINE Alu -162 150 14 445 210 25 50 chr9 105733007 105733075 -12129552 - MER58B DNA MER1_type -224 117 52 2050 126 0 10 chr9 105733075 105733406 -12129221 + AluSx SINE Alu 1 312 0 445 210 25 50 chr9 105733406 105733456 -12129171 - MER58B DNA MER1_type -289 52 2 193 272 222 58 chr9 105733460 105733541 -12129086 + L3 LINE CR1 1294 1360 -217 2201 88 7 23 chr9 105733541 105733847 -12128780 - AluSx SINE Alu -11 301 1 193 272 222 58 chr9 105733847 105734008 -12128619 + L3 LINE CR1 1360 1576 -1 394 283 54 30 chr9 105734019 105734185 -12128442 - MIR SINE MIR 0 262 93 1311 110 5 28 chr9 105735501 105735719 -12126908 - AluSx SINE Alu -15 297 85 1100 87 7 7 chr9 105735731 105735880 -12126747 - AluSq/x SINE Alu -164 149 1 269 306 0 0 chr9 105735883 105735955 -12126672 - MIR SINE MIR -102 160 89 255 261 99 27 chr9 105736012 105736123 -12126504 - MER5A DNA MER1_type -23 166 48 669 277 51 36 chr9 105736492 105736745 -12125882 - MIR SINE MIR 0 262 6 713 181 0 42 chr9 105736886 105737030 -12125597 + MIR SINE MIR 12 149 -113 1171 184 121 53 chr9 105737031 105737313 -12125314 + AluJo SINE Alu 1 301 -1 429 191 0 86 chr9 105737313 105737418 -12125209 - AluSx SINE Alu -216 97 2 2373 56 0 31 chr9 105738344 105738664 -12123963 - AluY SINE Alu -1 310 1 2217 109 0 3 chr9 105738664 105738975 -12123652 - AluSx SINE Alu -2 310 1 2275 88 7 0 chr9 105738997 105739302 -12123325 + AluSg SINE Alu 1 307 -3 1175 112 0 22 chr9 105739302 105739471 -12123156 + AluSg/x SINE Alu 125 291 -19 2182 112 0 3 chr9 105739471 105739774 -12122853 + AluSx SINE Alu 1 302 -10 2454 66 0 0 chr9 105739776 105740077 -12122550 + AluY SINE Alu 3 303 -8 291 197 66 0 chr9 105740673 105740734 -12121893 + MIR SINE MIR 8 72 -190 188 221 0 0 chr9 105741551 105741591 -12121036 - MIR SINE MIR -110 152 114 1106 175 25 0 chr9 105741604 105741804 -12120823 + AluJo SINE Alu 85 289 -23 216 301 24 12 chr9 105741808 105741891 -12120736 - MER5A DNA MER1_type -80 109 26 181 340 60 20 chr9 105741909 105742009 -12120618 - MIR SINE MIR -149 113 10 1042 152 12 12 chr9 105742584 105742755 -12119872 + FAM SINE Alu 2 172 -3 257 257 157 5 chr9 105742775 105742989 -12119638 + L1M4 LINE L1 5187 5431 -744 1241 126 184 0 chr9 105743015 105743238 -12119389 - AluYa5 SINE Alu -47 264 1 518 128 8 86 chr9 105743238 105743355 -12119272 - MLT2D LTR ERVL -205 209 102 2205 80 20 3 chr9 105743356 105743657 -12118970 - AluY SINE Alu -5 306 1 2096 105 0 0 chr9 105743659 105743936 -12118691 - AluSx SINE Alu -10 302 26 311 175 0 0 chr9 105743937 105743994 -12118633 - AluS SINE Alu -243 57 1 1118 201 32 99 chr9 105743996 105744154 -12118473 - AluJo SINE Alu -9 293 165 1906 150 0 3 chr9 105744154 105744460 -12118167 - AluSx SINE Alu -7 305 1 1118 201 32 99 chr9 105744460 105744614 -12118013 - AluJo SINE Alu -137 165 2 2228 104 0 0 chr9 105744635 105744934 -12117693 - AluSx SINE Alu -13 299 1 1584 151 0 0 chr9 105744934 105745173 -12117454 + AluSx SINE Alu 62 300 -12 2097 104 17 0 chr9 105745173 105745472 -12117155 + AluSg SINE Alu 1 304 -6 1557 162 30 34 chr9 105745912 105746209 -12116418 + AluJo SINE Alu 2 297 -15 1946 139 0 29 chr9 105746220 105746529 -12116098 + AluSx SINE Alu 1 300 -12 192 284 193 18 chr9 105746648 105746757 -12115870 + MIR SINE MIR 37 164 -98 215 349 53 30 chr9 105746765 105746897 -12115730 - L2 LINE L2 -2 3270 3136 1107 163 0 0 chr9 105746996 105747162 -12115465 - AluSg/x SINE Alu -15 297 132 227 170 0 0 chr9 105747182 105747229 -12115398 + L1MB3 LINE L1 6127 6173 -10 1615 249 161 23 chr9 105747251 105747682 -12114945 + L2 LINE L2 1700 2070 -1244 1770 155 3 29 chr9 105747682 105747991 -12114636 - AluSx SINE Alu -11 301 1 1615 249 161 23 chr9 105747991 105748257 -12114370 + L2 LINE L2 2070 2493 -821 2021 128 0 3 chr9 105748257 105748554 -12114073 - AluSg SINE Alu -8 302 7 2077 118 17 0 chr9 105748562 105748858 -12113769 - AluSx SINE Alu -11 301 1 1159 105 6 6 chr9 105748867 105749039 -12113588 - AluSp SINE Alu -7 306 135 260 160 170 75 chr9 105749041 105749135 -12113492 + L2 LINE L2 2484 2586 -728 2296 76 7 3 chr9 105749178 105749479 -12113148 + AluSp SINE Alu 1 302 -11 1288 194 12 4 chr9 105749546 105749804 -12112823 + AluJb SINE Alu 21 280 -32 240 35 0 0 chr9 105749810 105749839 -12112788 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 394 173 88 131 chr9 105749840 105749953 -12112674 + L2 LINE L2 2773 2889 -424 2358 76 0 3 chr9 105749953 105750256 -12112371 - AluSg SINE Alu -8 302 1 2255 109 0 3 chr9 105750262 105750575 -12112052 - AluSx SINE Alu 0 312 1 838 146 0 29 chr9 105750578 105750715 -12111912 - FLAM_A SINE Alu 0 133 1 394 173 88 131 chr9 105750715 105750871 -12111756 + L2 LINE L2 2896 3038 -275 1087 124 0 0 chr9 105750902 105751055 -12111572 + AluSg/x SINE Alu 147 299 -13 243 250 43 22 chr9 105751070 105751162 -12111465 + MER69A DNA AcHobo 63 156 -21 660 171 77 41 chr9 105751163 105751333 -12111294 + L2 LINE L2 3095 3270 -43 211 294 0 0 chr9 105751687 105751738 -12110889 - MIR SINE MIR -63 145 95 2302 79 3 22 chr9 105751909 105752226 -12110401 - AluY SINE Alu 0 311 1 2285 100 0 0 chr9 105752228 105752528 -12110099 - AluSq SINE Alu -13 300 1 2202 95 3 0 chr9 105753226 105753541 -12109086 + AluSq SINE Alu 1 316 0 1607 161 45 0 chr9 105753612 105753879 -12108748 - AluJb SINE Alu -13 299 21 1423 188 4 23 chr9 105753915 105754198 -12108429 + AluJb SINE Alu 27 304 0 582 265 60 20 chr9 105754275 105754475 -12108152 + MIR SINE MIR 53 260 -2 193 346 37 37 chr9 105754744 105754851 -12107776 + MIR SINE MIR 1 107 -155 239 291 82 51 chr9 105754919 105755077 -12107550 + MIR SINE MIR 99 261 -1 1324 233 14 3 chr9 105755312 105755453 -12107174 - AluJb SINE Alu -22 290 152 2510 46 3 0 chr9 105755453 105755757 -12106870 - AluY SINE Alu -6 305 1 1324 233 14 3 chr9 105755757 105755902 -12106725 - AluJb SINE Alu -160 152 1 2788 16 0 0 chr9 105756677 105756992 -12105635 - AluYb8 SINE Alu -3 315 1 2160 93 0 0 chr9 105756992 105757272 -12105355 - AluSx SINE Alu -12 300 21 195 374 84 25 chr9 105757277 105757480 -12105147 + L2 LINE L2 2965 3179 -93 2114 141 0 3 chr9 105757682 105757994 -12104633 + AluSx SINE Alu 1 311 -1 2225 102 0 0 chr9 105758091 105758394 -12104233 + AluSq SINE Alu 5 307 -6 435 275 63 7 chr9 105758647 105758789 -12103838 + MIR SINE MIR 34 183 -79 1930 136 3 38 chr9 105758921 105759237 -12103390 - AluSx SINE Alu -7 305 1 298 244 12 0 chr9 105759467 105759549 -12103078 + MLT1J2 LTR MaLR 71 153 -297 313 239 73 37 chr9 105759660 105759769 -12102858 + MLT1J2 LTR MaLR 338 450 0 324 214 255 10 chr9 105759769 105759867 -12102760 - MIR SINE MIR -104 158 37 2507 40 0 46 chr9 105759887 105760213 -12102414 - AluY SINE Alu 0 311 1 743 180 16 0 chr9 105760221 105760343 -12102284 - AluSq/x SINE Alu -189 124 1 1872 111 0 8 chr9 105760347 105760652 -12101975 - AluSg SINE Alu 0 325 23 2121 119 0 3 chr9 105760661 105760954 -12101673 - AluSx SINE Alu -18 294 3 2058 105 3 0 chr9 105760969 105761255 -12101372 - AluSc SINE Alu -16 293 7 2356 64 3 16 chr9 105761270 105761584 -12101043 - AluY SINE Alu -1 310 1 501 83 0 60 chr9 105761584 105761660 -12100967 - AluSp/q SINE Alu -17 296 224 1033 69 8 0 chr9 105761662 105761793 -12100834 - AluSp SINE Alu -180 133 2 2192 85 0 0 chr9 105761797 105762111 -12100516 - AluY SINE Alu 0 314 1 1632 108 151 4 chr9 105762190 105762449 -12100178 + AluSg1 SINE Alu 1 297 -12 720 146 9 0 chr9 105762470 105762580 -12100047 - FLAM_C SINE Alu -32 111 1 951 210 46 14 chr9 105762621 105762840 -12099787 + MIR SINE MIR 13 238 -24 498 326 65 58 chr9 105763613 105764030 -12098597 + L2 LINE L2 2893 3312 -1 2178 113 3 0 chr9 105764036 105764338 -12098289 + AluSx SINE Alu 2 304 -8 200 327 45 73 chr9 105764339 105764416 -12098211 - MIR SINE MIR -153 109 31 2103 117 0 31 chr9 105764416 105764733 -12097894 - AluSg SINE Alu -3 307 1 2188 97 17 0 chr9 105764733 105765032 -12097595 - AluSp SINE Alu -9 304 1 200 327 45 73 chr9 105765032 105765063 -12097564 - MIR SINE MIR -229 33 3 258 355 84 0 chr9 105766024 105766131 -12096496 - L2 LINE L2 -14 3258 3143 557 65 8 65 chr9 105766571 105766694 -12095933 + (TTCC)n Simple_repeat Simple_repeat 4 119 0 862 96 24 0 chr9 105766718 105766843 -12095784 - AluSc SINE Alu -15 294 167 2216 127 0 0 chr9 105766915 105767222 -12095405 - AluSx SINE Alu -5 307 1 343 245 83 0 chr9 105767446 105767580 -12095047 + MLT1J2 LTR MaLR 20 129 -321 2294 82 24 0 chr9 105767587 105767880 -12094747 - AluSg SINE Alu -10 300 1 844 171 24 37 chr9 105767893 105768057 -12094570 - FRAM SINE Alu -18 158 1 578 227 31 3 chr9 105768059 105768291 -12094336 + MLT1J LTR MaLR 195 508 -3 2080 99 0 18 chr9 105768374 105768551 -12094076 - AluSx SINE Alu 0 310 139 2382 79 0 22 chr9 105768551 105768866 -12093761 - AluSq SINE Alu -5 308 1 2080 99 0 18 chr9 105768866 105768999 -12093628 - AluSx SINE Alu -171 139 5 220 261 0 0 chr9 105769088 105769134 -12093493 + L2 LINE L2 3221 3266 -6 190 363 0 39 chr9 105769221 105769323 -12093304 - L2 LINE L2 -25 3288 3191 754 284 42 49 chr9 105769374 105769482 -12093145 + L2 LINE L2 3009 3116 -197 2230 97 3 13 chr9 105769482 105769792 -12092835 - AluSg SINE Alu -3 307 1 1363 198 22 57 chr9 105769792 105770106 -12092521 - AluJo SINE Alu -9 303 1 754 284 42 49 chr9 105770106 105770302 -12092325 + L2 LINE L2 3114 3312 -1 233 358 112 8 chr9 105770363 105770497 -12092130 - L2 LINE L2 -179 3093 2946 239 187 103 93 chr9 105770510 105770563 -12092064 - MER2 DNA MER2_type -25 320 269 2257 105 7 0 chr9 105770563 105770869 -12091758 + AluSg SINE Alu 1 308 -2 239 187 103 93 chr9 105770869 105770922 -12091705 - MER2 DNA MER2_type -76 269 213 2040 74 0 28 chr9 105771081 105771364 -12091263 + AluY SINE Alu 1 275 -36 180 0 0 0 chr9 105771367 105771387 -12091240 + (T)n Simple_repeat Simple_repeat 1 20 0 4317 187 36 46 chr9 105771715 105772678 -12089949 + LTR13 LTR ERVK 1 954 0 2286 92 10 0 chr9 105772830 105773136 -12089491 + AluSx SINE Alu 3 311 -1 316 296 138 38 chr9 105773147 105773306 -12089321 + MIR SINE MIR 48 222 -40 2096 117 17 0 chr9 105773320 105773611 -12089016 - AluSx SINE Alu -16 296 1 1872 168 0 9 chr9 105773642 105773957 -12088670 + AluSx SINE Alu 1 312 0 2152 104 3 7 chr9 105774329 105774627 -12088000 - AluSx SINE Alu -15 297 1 673 170 0 0 chr9 105777381 105777487 -12085140 - FLAM_A SINE Alu -17 125 20 272 314 48 85 chr9 105778093 105778364 -12084263 + MIR SINE MIR 2 262 0 421 284 58 26 chr9 105778459 105778614 -12084013 + MIR3 SINE MIR 5 164 -44 2218 103 20 0 chr9 105779393 105779695 -12082932 - AluSq SINE Alu -5 308 1 25 0 0 0 chr9 105779840 105779865 -12082762 + AT_rich Low_complexity Low_complexity 1 25 0 1847 155 16 10 chr9 105780823 105781133 -12081494 - AluSx SINE Alu 0 312 1 2230 96 7 3 chr9 105781465 105781766 -12080861 + AluSx SINE Alu 1 302 -10 1347 187 55 0 chr9 105782647 105782882 -12079745 + AluJo SINE Alu 1 248 -64 468 310 90 0 chr9 105784980 105785135 -12077492 + MIR3 SINE MIR 31 199 -9 375 302 43 9 chr9 105785142 105785258 -12077369 + L2 LINE L2 3188 3307 -6 184 268 110 12 chr9 105786501 105786583 -12076044 + MIR3 SINE MIR 13 102 -106 304 278 103 10 chr9 105786614 105786711 -12075916 + L1MC4a LINE L1 5885 5990 -1818 556 245 170 16 chr9 105786893 105787081 -12075546 + MIR SINE MIR 36 252 -10 2011 113 3 10 chr9 105787168 105787494 -12075133 + AluSx SINE Alu 1 312 0 1069 119 0 0 chr9 105787494 105787645 -12074982 + AluSg/x SINE Alu 134 284 -28 240 86 0 0 chr9 105787645 105787680 -12074947 + (CATA)n Simple_repeat Simple_repeat 2 36 0 2297 63 0 30 chr9 105787722 105788021 -12074606 - AluY SINE Alu -21 290 1 1806 130 14 14 chr9 105788065 105788178 -12074449 + AluSx SINE Alu 23 135 -177 2297 77 13 3 chr9 105788178 105788478 -12074149 + AluY SINE Alu 1 303 -8 1806 130 14 14 chr9 105788478 105788649 -12073978 + AluSx SINE Alu 134 307 -5 276 277 0 0 chr9 105788986 105789051 -12073576 + MIR SINE MIR 53 117 -91 261 0 0 0 chr9 105789543 105789572 -12073055 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1764 145 60 0 chr9 105789691 105789974 -12072653 - AluJb SINE Alu -12 300 1 22 0 0 0 chr9 105789981 105790003 -12072624 + AT_rich Low_complexity Low_complexity 1 22 0 185 229 250 0 chr9 105790471 105790519 -12072108 + MIR SINE MIR 89 148 -60 216 232 18 18 chr9 105790856 105790912 -12071715 + MIR SINE MIR 95 150 -58 401 311 142 5 chr9 105792078 105792268 -12070359 + MIR SINE MIR 41 256 -6 1197 139 124 0 chr9 105792996 105793197 -12069430 + 7SLRNA srpRNA srpRNA 95 320 0 309 26 0 0 chr9 105793341 105793379 -12069248 + (GGA)n Simple_repeat Simple_repeat 1 38 0 21 0 0 0 chr9 105795009 105795030 -12067597 + AT_rich Low_complexity Low_complexity 1 21 0 2112 90 62 3 chr9 105795102 105795392 -12067235 + AluSx SINE Alu 1 307 -5 22 0 0 0 chr9 105797318 105797340 -12065287 + GC_rich Low_complexity Low_complexity 1 22 0 279 376 64 0 chr9 105799728 105799901 -12062726 - MIR SINE MIR -70 192 9 233 214 75 0 chr9 105801937 105802008 -12060619 - MIR SINE MIR -63 145 69 1638 158 3 56 chr9 105802047 105802222 -12060405 - AluJb SINE Alu -6 306 154 2358 84 3 0 chr9 105802222 105802521 -12060106 - AluSp SINE Alu -13 300 1 1638 158 3 56 chr9 105802521 105802668 -12059959 - AluJb SINE Alu -158 154 1 2351 91 0 0 chr9 105802678 105802985 -12059642 - AluSx SINE Alu -5 307 1 2099 102 17 0 chr9 105803555 105803849 -12058778 - AluSg SINE Alu -11 299 1 617 222 111 26 chr9 105804572 105804761 -12057866 + MIR SINE MIR 12 216 -46 656 194 0 13 chr9 105805065 105805220 -12057407 + GA-rich Low_complexity Low_complexity 1 153 0 180 364 18 0 chr9 105805222 105805277 -12057350 + L2 LINE L2 3255 3310 -3 283 294 14 7 chr9 105807522 105807665 -12054962 + (CA)n Simple_repeat Simple_repeat 1 144 0 282 29 0 0 chr9 105807926 105807961 -12054666 + (CA)n Simple_repeat Simple_repeat 1 35 0 2205 96 0 0 chr9 105809127 105809418 -12053209 - AluSx SINE Alu -21 291 1 433 237 38 15 chr9 105809834 105809965 -12052662 + L3 LINE CR1 1332 1465 -112 549 300 47 78 chr9 105810034 105810394 -12052233 + L2 LINE L2 2924 3272 0 386 318 40 14 chr9 105811200 105811348 -12051279 - L2 LINE L2 -3 3310 3159 228 250 0 0 chr9 105811598 105811646 -12050981 - L2 LINE L2 0 3313 3266 432 0 0 0 chr9 105812278 105812326 -12050301 + (CA)n Simple_repeat Simple_repeat 2 49 0 1773 157 17 3 chr9 105812596 105812889 -12049738 + AluJo SINE Alu 1 297 -15 207 0 0 0 chr9 105812889 105812912 -12049715 + (GGAGA)n Simple_repeat Simple_repeat 1 23 0 332 282 76 38 chr9 105812923 105812939 -12049688 + L1MC4a LINE L1 5293 5307 -814 2481 69 0 0 chr9 105812939 105813245 -12049382 + AluY SINE Alu 1 306 -5 332 282 76 38 chr9 105813245 105813359 -12049268 + L1MC4a LINE L1 5307 5428 -693 2213 86 4 0 chr9 105813370 105813650 -12048977 + AluSp SINE Alu 1 281 -32 315 0 0 0 chr9 105813650 105813685 -12048942 + (CAAA)n Simple_repeat Simple_repeat 4 38 0 688 310 73 13 chr9 105813716 105813819 -12048808 + L1MC4a LINE L1 5506 5601 -2207 1864 151 0 3 chr9 105813819 105814125 -12048502 + AluJb SINE Alu 1 305 0 688 310 73 13 chr9 105814125 105814323 -12048304 + L1MC4a LINE L1 5601 5826 -1982 2173 88 3 26 chr9 105814325 105814633 -12047994 + AluSx SINE Alu 1 301 -11 229 276 0 17 chr9 105914887 105914945 -11947682 - L2 LINE L2 -1 3271 3215 2472 126 30 35 chr9 105915392 105915827 -11946800 + Tigger2a DNA MER2_type 2 434 0 308 306 38 75 chr9 105915857 105915872 -11946755 + L2 LINE L2 3116 3130 -142 1930 96 104 0 chr9 105915872 105916152 -11946475 - AluSg SINE Alu 0 310 2 308 306 38 75 chr9 105916152 105916296 -11946331 + L2 LINE L2 3130 3269 -3 198 209 0 47 chr9 105916864 105916907 -11945720 - L2 LINE L2 -11 3261 3221 2289 85 0 16 chr9 105918156 105918462 -11944165 - AluSg SINE Alu -9 301 1 21 57 0 0 chr9 105918852 105918887 -11943740 + AT_rich Low_complexity Low_complexity 1 35 0 2196 84 0 0 chr9 105919142 105919415 -11943212 - AluSg SINE Alu -28 282 10 200 89 44 22 chr9 105920667 105920712 -11941915 + (TTA)n Simple_repeat Simple_repeat 1 46 0 470 207 9 27 chr9 105920718 105920829 -11941798 - FRAM SINE Alu -30 146 38 1322 147 22 121 chr9 105920991 105921305 -11941322 + AluJo SINE Alu 1 283 -29 189 0 0 0 chr9 105924880 105924901 -11937726 + (TG)n Simple_repeat Simple_repeat 2 22 0 21 0 0 0 chr9 105924966 105924987 -11937640 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 105926263 105926284 -11936343 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr9 105927832 105927865 -11934762 + AT_rich Low_complexity Low_complexity 1 33 0 42 36 0 0 chr9 105928819 105928875 -11933752 + GC_rich Low_complexity Low_complexity 1 56 0 27 83 0 28 chr9 105928937 105929046 -11933581 + GC_rich Low_complexity Low_complexity 1 106 0 204 176 0 0 chr9 105929499 105929533 -11933094 - L2 LINE L2 -13 3300 3267 227 226 65 0 chr9 105930438 105930500 -11932127 + MER116 DNA Mariner 9 74 -6 2043 123 3 16 chr9 105930994 105931304 -11931323 - AluSx SINE Alu -6 306 1 33 25 0 0 chr9 105931492 105931532 -11931095 + AT_rich Low_complexity Low_complexity 1 40 0 189 0 0 0 chr9 105936223 105936244 -11926383 + (T)n Simple_repeat Simple_repeat 1 21 0 285 218 0 0 chr9 105937495 105937550 -11925077 + FAM SINE Alu 125 179 0 388 255 60 23 chr9 105937639 105937767 -11924860 - MIR3 SINE MIR -21 187 53 930 145 0 0 chr9 105938285 105938536 -11924091 + (TA)n Simple_repeat Simple_repeat 1 251 0 306 0 0 0 chr9 105938536 105938570 -11924057 + (GA)n Simple_repeat Simple_repeat 2 35 0 240 255 0 0 chr9 105940608 105940659 -11921968 + L2 LINE L2 3216 3266 -6 230 54 0 27 chr9 105940815 105940852 -11921775 + (CAA)n Simple_repeat Simple_repeat 2 37 0 21 0 0 0 chr9 105941983 105942004 -11920623 + AT_rich Low_complexity Low_complexity 1 21 0 848 228 59 39 chr9 105942899 105943153 -11919474 + MIR SINE MIR 4 262 0 349 286 236 6 chr9 105946602 105946784 -11915843 - MIR SINE MIR -28 234 11 559 282 68 56 chr9 105946859 105947093 -11915534 + MIR SINE MIR 9 245 -17 24 0 0 0 chr9 105954166 105954190 -11908437 + AT_rich Low_complexity Low_complexity 1 24 0 183 186 0 0 chr9 105954717 105954760 -11907867 + CT-rich Low_complexity Low_complexity 1 43 0 476 234 70 25 chr9 105955646 105955804 -11906823 - MER104 DNA Tc2 -12 168 4 299 253 54 81 chr9 105955953 105955977 -11906650 - L1MC5 LINE L1 -61 7900 7877 367 158 26 13 chr9 105955977 105956053 -11906574 - MER116 DNA Mariner 0 80 4 299 253 54 81 chr9 105956053 105956214 -11906413 - L1MC5 LINE L1 -84 7877 7720 2062 158 31 40 chr9 105956290 105956746 -11905881 - L1MC1 LINE L1 -1 6332 5881 507 263 8 0 chr9 105958030 105958148 -11904479 - MIR SINE MIR -96 166 48 1823 103 69 62 chr9 105958299 105958590 -11904037 - AluSg1 SINE Alu -16 293 1 22 35 0 0 chr9 105960366 105960395 -11902232 + AT_rich Low_complexity Low_complexity 1 29 0 348 274 9 9 chr9 105960556 105960662 -11901965 - MIR SINE MIR 0 262 157 4701 191 57 16 chr9 105962500 105962649 -11899978 - Charlie1 DNA MER1_type 0 2761 2620 1883 152 7 7 chr9 105962649 105962946 -11899681 - AluJo SINE Alu -15 297 1 1744 189 0 17 chr9 105962948 105963250 -11899377 - AluJo SINE Alu -15 297 1 4701 191 57 16 chr9 105963250 105964281 -11898346 - Charlie1 DNA MER1_type -141 2620 1529 806 158 46 0 chr9 105964363 105964515 -11898112 + MER33 DNA MER1_type 1 159 -165 1299 124 51 14 chr9 105964529 105964746 -11897881 - AluJb SINE Alu 0 312 88 578 110 29 37 chr9 105964750 105964886 -11897741 + MER33 DNA MER1_type 185 319 -5 277 277 47 20 chr9 105964902 105965050 -11897577 - MER103 DNA DNA 0 166 15 203 237 0 88 chr9 105965131 105965201 -11897426 - MIR SINE MIR -49 159 96 2105 130 7 0 chr9 105965318 105965602 -11897025 + AluSx SINE Alu 1 286 -26 2215 89 0 11 chr9 105965628 105965909 -11896718 + AluSq SINE Alu 14 291 -22 1540 177 0 70 chr9 105966837 105966979 -11895648 + AluJo SINE Alu 1 113 -199 2102 122 3 34 chr9 105966979 105967299 -11895328 + AluSx SINE Alu 1 310 -2 1540 177 0 70 chr9 105967299 105967455 -11895172 + AluJo SINE Alu 113 278 -34 300 70 0 0 chr9 105967473 105967516 -11895111 + (TG)n Simple_repeat Simple_repeat 2 44 0 2405 56 0 26 chr9 105967540 105967845 -11894782 - AluY SINE Alu -14 297 1 231 317 67 29 chr9 105968271 105968375 -11894252 + L2 LINE L2 3162 3269 -3 196 321 107 24 chr9 105969791 105969959 -11892668 + L2 LINE L2 2576 2757 -557 346 313 68 14 chr9 105970060 105970207 -11892420 - L1ME4a LINE L1 0 6121 5967 1571 135 56 16 chr9 105970417 105970669 -11891958 - AluJb SINE Alu -50 262 1 515 214 37 121 chr9 105970726 105970941 -11891686 - L2 LINE L2 -57 3256 3060 285 263 20 30 chr9 105971147 105971246 -11891381 - L1ME4a LINE L1 -457 5664 5567 468 271 14 4 chr9 105972847 105973012 -11889615 - Charlie8 DNA MER1_type -2193 224 113 213 281 34 11 chr9 105973241 105973330 -11889297 + L2 LINE L2 2461 2551 -763 681 328 154 13 chr9 105973942 105974390 -11888237 + L2 LINE L2 2461 2971 -343 24 32 0 0 chr9 105975376 105975407 -11887220 + AT_rich Low_complexity Low_complexity 1 31 0 24 53 0 0 chr9 105976577 105976615 -11886012 + AT_rich Low_complexity Low_complexity 1 38 0 1997 146 7 7 chr9 105976884 105977185 -11885442 - AluJb SINE Alu -11 301 1 305 321 18 9 chr9 105977402 105977511 -11885116 + L1ME2 LINE L1 5032 5141 -1005 1015 230 209 42 chr9 105977553 105978200 -11884427 + L1MC4 LINE L1 7160 7914 -128 186 43 0 0 chr9 105978320 105978343 -11884284 + (CA)n Simple_repeat Simple_repeat 2 24 0 254 207 108 54 chr9 105978360 105978471 -11884156 + L1MC4 LINE L1 7925 8041 -1 1092 275 88 20 chr9 105978479 105979079 -11883548 + L1ME2 LINE L1 5191 5830 -334 2088 91 84 7 chr9 105979241 105979526 -11883101 + AluSp SINE Alu 1 307 -6 373 276 9 38 chr9 105979711 105979816 -11882811 - L2 LINE L2 -1 3312 3211 1224 250 115 33 chr9 105979816 105980296 -11882331 + L1ME3A LINE L1 5647 6165 -5 1072 223 273 11 chr9 105980305 105980928 -11881699 - L2 LINE L2 -78 3235 2472 383 223 71 29 chr9 105981414 105981537 -11881090 - MIR SINE MIR -40 168 41 2045 104 50 3 chr9 105982402 105982700 -11879927 + AluSx SINE Alu 1 312 0 704 191 248 84 chr9 105982955 105983395 -11879232 - LTR33 LTR ERVL 0 521 10 186 263 0 0 chr9 105983696 105983734 -11878893 - MIR SINE MIR -9 253 216 * 362 332 124 80 chr9 105983703 105984089 -11878538 - L2 LINE L2 -22 3250 2848 722 232 23 77 chr9 105984107 105984258 -11878369 + MIR SINE MIR 18 151 -111 2180 129 0 3 chr9 105984258 105984560 -11878067 + AluSx SINE Alu 1 301 -11 722 232 23 77 chr9 105984560 105984667 -11877960 + MIR SINE MIR 151 262 0 448 330 71 42 chr9 105984736 105984975 -11877652 + L2 LINE L2 2992 3237 -35 393 362 92 7 chr9 105984981 105985252 -11877375 - L2 LINE L2 -880 2434 2141 186 71 0 0 chr9 105985613 105985641 -11876986 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 581 299 83 29 chr9 105985711 105986593 -11876034 + L1MEc LINE L1 857 1816 -4580 328 254 137 31 chr9 105986794 105987205 -11875422 + L1MEc LINE L1 2051 2432 -3783 381 239 67 52 chr9 105987206 105987340 -11875287 + L1MEc LINE L1 2541 2676 -3539 753 209 70 29 chr9 105987340 105987512 -11875115 - MER5A DNA MER1_type 0 189 11 1306 187 54 54 chr9 105987516 105987939 -11874688 + L1MEc LINE L1 2662 3084 -3131 311 268 37 0 chr9 105987975 105988057 -11874570 + L1MC4 LINE L1 6615 6699 -1343 230 260 219 0 chr9 105988059 105988155 -11874472 + L1MC/D LINE L1 5618 5734 -2074 1435 161 28 0 chr9 105988156 105988374 -11874253 - AluJb SINE Alu -84 228 5 499 274 103 16 chr9 105988470 105988661 -11873966 + MIR SINE MIR 58 261 -1 2207 109 0 10 chr9 105989966 105990268 -11872359 - AluSx SINE Alu -13 299 1 456 245 196 0 chr9 105990505 105990648 -11871979 + MIR SINE MIR 80 250 -12 660 311 31 4 chr9 105991070 105991295 -11871332 - MIR SINE MIR -6 256 26 188 286 100 0 chr9 105992162 105992232 -11870395 + L2 LINE L2 3231 3307 -6 541 237 133 118 chr9 105992281 105992717 -11869910 - L1ME4a LINE L1 -3 6118 5671 1721 151 23 0 chr9 105992717 105992976 -11869651 + AluJb SINE Alu 31 295 -17 541 237 133 118 chr9 105992976 105993105 -11869522 - L1ME4a LINE L1 -450 5671 5545 583 292 84 25 chr9 105993348 105993670 -11868957 + Charlie2 DNA MER1_type 1 341 -2521 1373 193 120 54 chr9 105993754 105994021 -11868606 + Charlie2 DNA MER1_type 2287 2535 -327 2307 86 0 10 chr9 105994021 105994323 -11868304 - AluSc SINE Alu -10 299 1 1373 193 120 54 chr9 105994323 105994595 -11868032 + Charlie2 DNA MER1_type 2535 2862 0 376 326 64 43 chr9 105995150 105995432 -11867195 + L2 LINE L2 3011 3298 -15 526 262 66 55 chr9 105995617 105995800 -11866827 - MIR SINE MIR -75 187 3 432 309 56 6 chr9 105997951 105998129 -11864498 + L3 LINE CR1 1292 1478 -99 343 293 113 0 chr9 105998249 105998355 -11864272 - L2 LINE L2 -1070 2244 2127 180 125 0 0 chr9 105998366 105998398 -11864229 + (TC)n Simple_repeat Simple_repeat 1 32 0 214 341 74 15 chr9 105998416 105998551 -11864076 - L2 LINE L2 -1257 2057 1915 266 185 31 0 chr9 106001303 106001368 -11861259 + T-rich Low_complexity Low_complexity 2 68 0 347 305 15 23 chr9 106007104 106007235 -11855392 - MIR SINE MIR -57 151 22 1314 157 14 0 chr9 106007306 106007523 -11855104 - AluJo SINE Alu -83 229 10 821 176 0 0 chr9 106007556 106007687 -11854940 - FLAM_C SINE Alu -1 132 2 219 282 113 24 chr9 106008529 106008653 -11853974 - MIR SINE MIR -22 240 106 217 349 19 28 chr9 106008748 106008854 -11853773 - L2 LINE L2 -2 3270 3166 251 342 77 0 chr9 106009387 106009504 -11853123 - MIR SINE MIR -48 214 89 489 34 0 0 chr9 106009708 106009767 -11852860 + (TG)n Simple_repeat Simple_repeat 1 59 0 274 185 19 0 chr9 106009939 106009993 -11852634 + MIR SINE MIR 29 83 -179 2184 109 10 3 chr9 106010223 106010534 -11852093 - AluSq SINE Alu 0 313 1 314 220 0 0 chr9 106010540 106010599 -11852028 + MIR SINE MIR 49 107 -155 281 304 0 0 chr9 106010911 106010980 -11851647 - MIR SINE MIR -77 185 117 1992 119 0 35 chr9 106011035 106011345 -11851282 - AluSq SINE Alu -14 299 1 630 306 75 0 chr9 106011813 106012012 -11850615 + MIR SINE MIR 2 215 -47 532 272 0 7 chr9 106012202 106012338 -11850289 + MIR SINE MIR 60 194 -68 279 264 81 0 chr9 106013413 106013500 -11849127 - L2 LINE L2 -10 3303 3210 1404 170 4 0 chr9 106013736 106013966 -11848661 + AluJb SINE Alu 1 231 -81 324 299 49 16 chr9 106014088 106014251 -11848376 - MIR SINE MIR -63 145 19 610 301 74 17 chr9 106014465 106014764 -11847863 - L1ME LINE L1 -527 5637 5322 1778 137 0 49 chr9 106014764 106014806 -11847821 - AluSx SINE Alu 0 312 269 189 107 0 0 chr9 106014806 106014834 -11847793 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1778 137 0 49 chr9 106014834 106015119 -11847508 - AluSx SINE Alu -43 269 1 1970 134 0 0 chr9 106015176 106015487 -11847140 + AluSx SINE Alu 1 311 0 1278 292 88 8 chr9 106015516 106016006 -11846621 - L1ME LINE L1 -1162 4984 4456 620 185 0 25 chr9 106016234 106016396 -11846231 + CT-rich Low_complexity Low_complexity 2 159 0 7289 197 41 18 chr9 106016417 106017376 -11845251 - L1MC1 LINE L1 -6 6607 5672 1800 152 0 10 chr9 106017376 106017679 -11844948 - AluJb SINE Alu -12 300 1 7289 197 41 18 chr9 106017679 106018664 -11843963 - L1MC1 LINE L1 -941 5672 4711 247 59 20 39 chr9 106018664 106018715 -11843912 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 1772 30 0 0 chr9 106018715 106018918 -11843709 - L1PA4 LINE L1 -13 6142 5940 7289 197 41 18 chr9 106018918 106019926 -11842701 - L1MC1 LINE L1 -1901 4712 3583 953 139 7 0 chr9 106019927 106020071 -11842556 - THE1C LTR MaLR -230 145 1 2581 187 10 16 chr9 106020072 106020100 -11842527 - L1MC1 LINE L1 -5917 509 482 2155 126 0 0 chr9 106020100 106020410 -11842217 + AluSg SINE Alu 1 310 0 2581 187 10 16 chr9 106020410 106020889 -11841738 - L1MC1 LINE L1 -5944 482 5 223 185 0 56 chr9 106020898 106020952 -11841675 + (CATATA)n Simple_repeat Simple_repeat 3 53 0 449 339 52 41 chr9 106020955 106021013 -11841614 - L1MC4a LINE L1 -1899 5909 5853 2230 99 0 7 chr9 106021013 106021315 -11841312 - AluSx SINE Alu -12 300 1 449 339 52 41 chr9 106021315 106021551 -11841076 - L1MC4a LINE L1 -1955 5853 5608 2234 136 27 29 chr9 106021551 106021927 -11840700 + THE1C LTR MaLR 1 375 0 449 339 52 41 chr9 106021927 106021994 -11840633 - L1MC4a LINE L1 -2200 5608 5543 220 292 21 62 chr9 106022314 106022410 -11840217 - MIR3 SINE MIR -39 169 78 184 215 63 25 chr9 106022402 106022481 -11840146 + MIR SINE MIR 45 126 -82 * 248 354 109 0 chr9 106022854 106023001 -11839626 + MIR SINE MIR 85 247 -15 2035 106 38 0 chr9 106023636 106023928 -11838699 + AluSx SINE Alu 1 303 -9 779 208 0 4 chr9 106024101 106024370 -11838257 + (CCA)n Simple_repeat Simple_repeat 1 267 0 * 878 182 7 27 chr9 106024359 106024803 -11837824 + (CACCAT)n Simple_repeat Simple_repeat 1 435 0 239 292 0 0 chr9 106024811 106024883 -11837744 + (CAT)n Simple_repeat Simple_repeat 3 74 0 769 242 0 0 chr9 106025150 106025307 -11837320 - MLT1-int LTR MaLR -1208 163 7 430 215 108 31 chr9 106025492 106025622 -11837005 + MIR SINE MIR 23 162 -100 325 207 240 8 chr9 106026122 106026162 -11836465 - MER5B DNA MER1_type -3 175 146 2103 122 0 0 chr9 106026162 106026457 -11836170 - AluSq SINE Alu -18 295 1 325 207 240 8 chr9 106026457 106026537 -11836090 - MER5B DNA MER1_type -32 146 27 205 308 64 0 chr9 106027738 106027816 -11834811 - MIR SINE MIR -1 261 179 782 267 103 16 chr9 106027829 106028309 -11834318 + L2 LINE L2 2782 3312 -1 303 264 11 0 chr9 106028312 106028399 -11834228 - MIR SINE MIR -119 143 56 228 314 128 34 chr9 106028746 106028950 -11833677 + MIR SINE MIR 27 249 -13 232 272 129 43 chr9 106030056 106030288 -11832339 + L2 LINE L2 2510 2761 -553 411 212 225 40 chr9 106030441 106030592 -11832035 + L2 LINE L2 3121 3299 -14 1313 169 23 143 chr9 106030593 106030942 -11831685 - AluYb8 SINE Alu -1 307 1 315 245 176 0 chr9 106031160 106031262 -11831365 + MIR SINE MIR 35 154 -108 217 143 0 0 chr9 106031267 106031302 -11831325 - MIR SINE MIR -7 255 221 200 208 0 19 chr9 106031626 106031679 -11830948 + C-rich Low_complexity Low_complexity 3 54 0 437 261 64 0 chr9 106032007 106032179 -11830448 + MIR3 SINE MIR 3 184 -62 2143 109 26 0 chr9 106032401 106032703 -11829924 - AluSx SINE Alu -2 310 1 316 311 0 0 chr9 106032705 106032795 -11829832 - MIR SINE MIR -99 163 74 2142 91 0 27 chr9 106035666 106035964 -11826663 - AluSx SINE Alu -22 290 1 1778 155 28 0 chr9 106035964 106036254 -11826373 - AluJo SINE Alu -14 298 1 317 250 88 73 chr9 106037292 106037428 -11825199 + MIR SINE MIR 103 240 -22 1375 115 35 184 chr9 106037716 106038064 -11824563 + AluJb SINE Alu 1 296 -16 28 61 0 0 chr9 106038554 106038603 -11824024 + AT_rich Low_complexity Low_complexity 1 49 0 262 294 112 48 chr9 106038928 106039115 -11823512 - MIR SINE MIR -28 234 36 417 160 27 147 chr9 106039217 106039294 -11823333 - MIR SINE MIR -54 208 156 2160 114 0 0 chr9 106039294 106039591 -11823036 + AluSx SINE Alu 5 301 -11 417 160 27 147 chr9 106039591 106039663 -11822964 - MIR SINE MIR -106 156 77 185 241 127 13 chr9 106039779 106039858 -11822769 + MIR SINE MIR 63 150 -112 188 293 78 93 chr9 106040054 106040259 -11822368 - L2 LINE L2 -213 3059 2858 507 281 0 0 chr9 106040586 106040721 -11821906 - MIR SINE MIR -40 222 88 215 316 112 20 chr9 106041383 106041481 -11821146 + MIR SINE MIR 14 120 -142 214 143 0 0 chr9 106042065 106042100 -11820527 + L2 LINE L2 3224 3258 -14 451 208 42 0 chr9 106042685 106042781 -11819846 + MIR SINE MIR 77 176 -86 561 279 28 96 chr9 106042947 106043270 -11819357 - L2 LINE L2 -61 3211 2911 934 143 0 0 chr9 106043368 106043501 -11819126 - FLAM_C SINE Alu 0 133 1 186 318 129 30 chr9 106044342 106044474 -11818153 - MIR SINE MIR -25 237 93 336 346 22 0 chr9 106044518 106044654 -11817973 - HERVL LTR ERVL -850 4804 4666 336 333 0 0 chr9 106044760 106044853 -11817774 - HERVL LTR ERVL -1214 4271 4179 1351 120 56 0 chr9 106044913 106045129 -11817498 - AluSg/x SINE Alu -2 310 83 1066 288 78 69 chr9 106045145 106045368 -11817259 - HERVL LTR ERVL -2779 2217 1998 1934 112 51 7 chr9 106045368 106045662 -11816965 - AluSg SINE Alu -1 309 3 1066 288 78 69 chr9 106045662 106045987 -11816640 - HERVL LTR ERVL -2998 1998 1664 663 336 73 8 chr9 106046045 106046417 -11816210 - HERVL LTR ERVL -3493 1503 1108 370 250 121 9 chr9 106046616 106046732 -11815895 - HERVL LTR ERVL -4135 861 733 1155 367 24 8 chr9 106046770 106047367 -11815260 - HERVL LTR ERVL -4352 644 39 1265 193 183 28 chr9 106047434 106047488 -11815139 - LTR16A1 LTR ERVL -3 454 410 2012 143 153 8 chr9 106047488 106047860 -11814767 + MSTA LTR MaLR 1 426 -2 1265 193 183 28 chr9 106047860 106048198 -11814429 - LTR16A1 LTR ERVL -47 410 1 1310 137 4 26 chr9 106048838 106048874 -11813753 - L1MD3 LINE L1 -130 7865 7830 2078 133 64 25 chr9 106048874 106049235 -11813392 - THE1C LTR MaLR 0 375 1 1310 137 4 26 chr9 106049235 106049425 -11813202 - L1MD3 LINE L1 -165 7830 7644 2245 118 137 11 chr9 106049803 106050183 -11812444 + MSTA LTR MaLR 1 428 0 293 286 0 0 chr9 106050390 106050467 -11812160 + MIR SINE MIR 63 139 -123 549 317 96 19 chr9 106050519 106050831 -11811796 + MLT1I LTR MaLR 71 406 -3 405 0 0 0 chr9 106051750 106051795 -11810832 + (TG)n Simple_repeat Simple_repeat 2 46 0 185 105 0 26 chr9 106051800 106051838 -11810789 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 1379 154 18 0 chr9 106051869 106052090 -11810537 - AluJo SINE Alu -85 227 3 278 206 176 0 chr9 106052446 106052514 -11810113 + L2 LINE L2 3233 3312 -1 384 253 11 68 chr9 106052628 106052818 -11809809 + (TGAA)n Simple_repeat Simple_repeat 1 179 0 384 253 11 68 chr9 106052856 106053046 -11809581 + (TGAA)n Simple_repeat Simple_repeat 1 179 0 386 253 17 64 chr9 106053069 106053448 -11809179 + (TGAA)n Simple_repeat Simple_repeat 1 361 0 364 266 0 78 chr9 106053483 106053737 -11808890 + (TGAG)n Simple_repeat Simple_repeat 1 234 0 325 358 17 8 chr9 106053737 106053857 -11808770 - L3 LINE CR1 -503 1074 954 2045 192 88 0 chr9 106055138 106055559 -11807068 + LTR32 LTR ERVL 14 471 0 310 311 203 16 chr9 106056726 106057041 -11805586 - L2 LINE L2 -623 2691 2318 1898 139 7 7 chr9 106057519 106057820 -11804807 - AluSx SINE Alu -11 301 1 1126 158 54 0 chr9 106057837 106058040 -11804587 - MER20 DNA MER1_type 0 219 6 2177 104 3 0 chr9 106058294 106058593 -11804034 + AluSx SINE Alu 1 300 -12 560 258 81 5 chr9 106058741 106058939 -11803688 + L1ME3A LINE L1 5952 6164 -6 2043 134 0 3 chr9 106058967 106059272 -11803355 + AluJb SINE Alu 1 304 -8 338 306 41 12 chr9 106059295 106059465 -11803162 - Tigger8 DNA MER2_type -56 610 436 2088 99 19 26 chr9 106059903 106060216 -11802411 - AluSx SINE Alu 0 312 2 184 282 245 5 chr9 106060221 106060409 -11802218 + L2 LINE L2 1647 1879 -1435 366 237 189 18 chr9 106060428 106060597 -11802030 + L2 LINE L2 2503 2700 -614 2091 116 6 16 chr9 106060630 106060941 -11801686 - AluSx SINE Alu -4 308 1 196 246 140 35 chr9 106061245 106061359 -11801268 + L2 LINE L2 3111 3236 -77 522 208 39 8 chr9 106061397 106061527 -11801100 + MIR SINE MIR 30 163 -99 379 271 131 0 chr9 106061725 106061847 -11800780 - MIR SINE MIR -78 184 47 2021 124 3 0 chr9 106062037 106062328 -11800299 + AluSx SINE Alu 11 302 -10 393 304 59 91 chr9 106062381 106062667 -11799960 + L3 LINE CR1 582 858 -719 297 328 69 37 chr9 106062715 106062904 -11799723 + L3 LINE CR1 426 620 -957 213 178 0 0 chr9 106063257 106063302 -11799325 + (CATG)n Simple_repeat Simple_repeat 3 47 0 414 241 37 0 chr9 106063320 106063482 -11799145 + (CATG)n Simple_repeat Simple_repeat 4 171 0 562 229 11 17 chr9 106063511 106063690 -11798937 + (CATG)n Simple_repeat Simple_repeat 1 178 0 192 254 0 0 chr9 106063704 106063763 -11798864 + (CGTG)n Simple_repeat Simple_repeat 4 62 0 261 320 0 0 chr9 106064872 106064947 -11797680 + L2 LINE L2 3235 3309 -4 2248 99 0 0 chr9 106065041 106065345 -11797282 - AluY SINE Alu -7 304 1 320 254 0 0 chr9 106065493 106065564 -11797063 + MIR SINE MIR 54 124 -138 232 174 116 0 chr9 106066010 106066064 -11796563 - MER96B DNA MER1_type? -275 142 96 2176 83 21 0 chr9 106066064 106066354 -11796273 + AluSx SINE Alu 5 300 -12 232 174 116 0 chr9 106066354 106066385 -11796242 - MER96B DNA MER1_type? -321 96 47 272 209 6 121 chr9 106067678 106067781 -11794846 - MLT1H LTR MaLR 0 549 474 1283 120 0 0 chr9 106067785 106067960 -11794667 - AluSg/x SINE Alu -4 308 134 2063 108 3 35 chr9 106067960 106068275 -11794352 - AluSq SINE Alu -8 305 1 721 277 49 58 chr9 106068277 106068624 -11794003 - MLT1H LTR MaLR -205 344 1 503 253 37 31 chr9 106068624 106068786 -11793841 - MIR SINE MIR -99 163 1 2251 96 3 0 chr9 106068912 106069213 -11793414 - AluSx SINE Alu -10 302 1 327 161 0 25 chr9 106069673 106069754 -11792873 - L1ME4a LINE L1 0 6121 6043 483 228 110 21 chr9 106071415 106071531 -11791096 + MER103 DNA DNA 2 135 -31 2700 92 20 0 chr9 106071531 106071888 -11790739 - THE1B LTR MaLR 0 364 1 483 228 110 21 chr9 106071888 106071916 -11790711 + MER103 DNA DNA 135 159 -7 303 174 29 14 chr9 106072039 106072108 -11790519 - MIR SINE MIR -112 150 81 2172 96 7 3 chr9 106072188 106072491 -11790136 - AluSq SINE Alu -9 304 1 206 254 0 16 chr9 106073021 106073084 -11789543 + GA-rich Low_complexity Low_complexity 2 63 0 964 271 122 44 chr9 106073591 106073649 -11788978 - LTR33 LTR ERVL -5 516 464 1772 154 7 17 chr9 106073649 106073941 -11788686 - AluJb SINE Alu -22 290 2 964 271 122 44 chr9 106073941 106074358 -11788269 - LTR33 LTR ERVL -57 464 4 2317 86 7 0 chr9 106074982 106075286 -11787341 + AluSx SINE Alu 1 306 -6 492 92 53 0 chr9 106075288 106075364 -11787263 + MADE1 DNA Mariner 1 80 0 610 269 12 0 chr9 106075400 106075567 -11787060 - MIR SINE MIR -22 240 72 2167 104 7 3 chr9 106075703 106076002 -11786625 + AluSx SINE Alu 1 300 -12 186 167 0 0 chr9 106076102 106076132 -11786495 - MIR SINE MIR -114 148 119 369 308 38 44 chr9 106077207 106077366 -11785261 - MIR SINE MIR -77 185 28 1795 158 20 10 chr9 106077572 106077875 -11784752 + AluJb SINE Alu 5 310 -2 823 118 0 0 chr9 106077875 106077994 -11784633 + AluJb SINE Alu 1 119 -193 216 0 0 0 chr9 106077995 106078019 -11784608 + (TAA)n Simple_repeat Simple_repeat 1 24 0 244 323 40 20 chr9 106078290 106078389 -11784238 + MIR SINE MIR 63 163 -99 527 236 9 0 chr9 106078406 106078516 -11784111 - MER81 DNA DNA -1 113 3 336 238 24 0 chr9 106079561 106079645 -11782982 - MIR SINE MIR -67 195 110 1875 271 65 59 chr9 106079921 106080700 -11781927 - L1ME3 LINE L1 -29 6133 5347 1903 191 46 14 chr9 106080700 106081050 -11781577 + MLT1A1 LTR MaLR 5 365 0 1875 271 65 59 chr9 106081050 106081123 -11781504 - L1ME3 LINE L1 -815 5347 5276 379 243 0 0 chr9 106081135 106081209 -11781418 - L1ME3 LINE L1 -933 5213 5140 278 330 21 0 chr9 106081223 106081317 -11781310 + MER117 DNA MER1_type 101 196 -1 2513 161 40 11 chr9 106081372 106081843 -11780784 - L1MB7 LINE L1 0 6184 5700 4287 210 24 62 chr9 106081851 106082452 -11780175 - L1MB7 LINE L1 -1281 4865 4335 180 0 0 0 chr9 106082452 106082472 -11780155 + (TG)n Simple_repeat Simple_repeat 2 21 0 4287 210 24 62 chr9 106082472 106083123 -11779504 - L1MB7 LINE L1 -1811 4335 3661 1474 309 35 22 chr9 106083158 106083708 -11778919 - Tigger8 DNA MER2_type -78 588 32 313 291 19 10 chr9 106084675 106084778 -11777849 - MIR SINE MIR 0 262 159 896 122 11 88 chr9 106084778 106084846 -11777781 - MLT1H LTR MaLR 0 549 477 2430 78 0 0 chr9 106084846 106085154 -11777473 + AluY SINE Alu 1 308 -3 896 122 11 88 chr9 106085154 106085266 -11777361 - MLT1H LTR MaLR -72 477 383 1422 199 40 1 chr9 106085316 106085769 -11776858 - LTR53 LTR ERVL -2 517 1 211 175 0 0 chr9 106085855 106085895 -11776732 - L2 LINE L2 -3 3310 3271 184 191 11 53 chr9 106086033 106086127 -11776500 + CT-rich Low_complexity Low_complexity 3 92 0 250 241 0 0 chr9 106086836 106086890 -11775737 + (TG)n Simple_repeat Simple_repeat 1 54 0 6609 104 37 13 chr9 106087915 106089100 -11773527 - HERVH LTR ERV1 -6146 1567 414 5348 84 1 3 chr9 106089200 106089957 -11772670 - HERVH LTR ERV1 -3818 3895 3140 * 5664 95 2 8 chr9 106089951 106090796 -11771831 - HERVH LTR ERV1 -4726 2987 2148 266 258 79 0 chr9 106091243 106091332 -11771295 + MIR SINE MIR 108 203 -59 2170 108 0 0 chr9 106092142 106092439 -11770188 - AluSx SINE Alu -15 297 1 548 266 41 30 chr9 106092447 106092616 -11770011 - MIR SINE MIR -72 190 20 370 241 78 13 chr9 106093047 106093168 -11769459 - MLT1F LTR MaLR 0 529 281 213 167 0 0 chr9 106093471 106093507 -11769120 + MIR SINE MIR 111 146 -116 207 318 135 14 chr9 106093819 106093967 -11768660 + L2 LINE L2 3075 3240 -32 272 286 0 0 chr9 106094010 106094087 -11768540 + (TTCA)n Simple_repeat Simple_repeat 1 77 0 235 344 44 0 chr9 106094207 106094297 -11768330 + MIR SINE MIR 108 201 -61 415 308 41 0 chr9 106094321 106094490 -11768137 - MIR SINE MIR -6 256 81 2107 89 3 3 chr9 106095664 106095987 -11766640 + AluSg SINE Alu 1 323 0 321 341 66 12 chr9 106096719 106096886 -11765741 - MIR SINE MIR -52 210 35 189 196 0 0 chr9 106097603 106097649 -11764978 + GA-rich Low_complexity Low_complexity 2 47 0 305 275 46 28 chr9 106097772 106097881 -11764746 + MIR SINE MIR 120 230 -32 195 218 0 51 chr9 106099242 106099301 -11763326 - MIR SINE MIR -51 157 103 236 179 107 0 chr9 106099823 106099879 -11762748 + MIR SINE MIR 83 144 -118 1862 139 3 26 chr9 106100083 106100392 -11762235 + AluJo SINE Alu 1 302 -10 660 184 31 112 chr9 106100985 106101181 -11761446 + MIR SINE MIR 50 229 -33 766 218 15 78 chr9 106102020 106102226 -11760401 - MER63A DNA MER1_type -16 194 2 189 345 12 12 chr9 106102532 106102616 -11760011 + MIR SINE MIR 62 145 -63 525 325 6 0 chr9 106102665 106102825 -11759802 - MIR SINE MIR -51 211 51 285 287 60 47 chr9 106102895 106103045 -11759582 + L2 LINE L2 3090 3241 -31 483 303 26 56 chr9 106103485 106103752 -11758875 + MIR SINE MIR 4 262 0 305 169 183 0 chr9 106104021 106104092 -11758535 + MIR SINE MIR 81 164 -98 1190 172 0 73 chr9 106104882 106105143 -11757484 + AluJo SINE Alu 54 295 -17 772 251 200 22 chr9 106105192 106105562 -11757065 - L2 LINE L2 -1 3312 2877 315 130 0 0 chr9 106106046 106106100 -11756527 + (A)n Simple_repeat Simple_repeat 1 54 0 25 0 0 0 chr9 106106387 106106412 -11756215 + AT_rich Low_complexity Low_complexity 1 25 0 212 86 29 0 chr9 106107334 106107369 -11755258 + (TC)n Simple_repeat Simple_repeat 1 36 0 383 140 32 11 chr9 106107589 106107682 -11754945 + CT-rich Low_complexity Low_complexity 3 97 0 381 271 0 0 chr9 106107754 106107909 -11754718 + (TTCA)n Simple_repeat Simple_repeat 3 157 0 251 224 190 60 chr9 106107953 106108069 -11754558 - L2 LINE L2 0 3272 3142 461 353 6 12 chr9 106108527 106108694 -11753933 - MIR SINE MIR -76 186 21 566 246 31 0 chr9 106108714 106108844 -11753783 + MIR SINE MIR 14 147 -115 388 250 74 62 chr9 106109340 106109516 -11753111 - MIR SINE MIR -57 205 28 255 61 0 0 chr9 106110105 106110138 -11752489 + (TCCCC)n Simple_repeat Simple_repeat 2 34 0 2286 115 0 3 chr9 106110145 106110575 -11752052 - AluSx SINE Alu 0 429 1 672 288 35 15 chr9 106110627 106110863 -11751764 - MIR SINE MIR -3 259 15 289 181 223 11 chr9 106111091 106111185 -11751442 + MIR3 SINE MIR 3 116 -92 278 239 34 45 chr9 106111284 106111372 -11751255 + MIR SINE MIR 176 262 0 239 268 71 55 chr9 106111402 106111529 -11751098 + L1ME4a LINE L1 5947 6075 -46 301 301 0 29 chr9 106112583 106112686 -11749941 + (CCTG)n Simple_repeat Simple_repeat 1 100 0 638 347 28 8 chr9 106113892 106114140 -11748487 - MIR SINE MIR -8 254 2 2087 191 33 77 chr9 106114304 106114330 -11748297 - L1MB7 LINE L1 -32 6152 6126 2374 92 0 3 chr9 106114330 106114634 -11747993 + AluSx SINE Alu 1 303 -9 2087 191 33 77 chr9 106114634 106115219 -11747408 - L1MB7 LINE L1 -58 6126 5568 369 348 95 5 chr9 106115370 106115580 -11747047 - MIR SINE MIR -32 230 2 308 267 133 9 chr9 106115798 106115903 -11746724 - MIR SINE MIR -113 149 32 414 0 0 0 chr9 106115912 106115958 -11746669 + (TG)n Simple_repeat Simple_repeat 2 47 0 2833 60 126 0 chr9 106116515 106116913 -11745714 - LTR7 LTR ERV1 -2 448 1 2329 93 48 13 chr9 106116913 106117290 -11745337 - HERVH LTR ERV1 0 7713 7324 1335 134 19 0 chr9 106117290 106117506 -11745121 - HERVH LTR ERV1 -1894 5819 5600 4338 134 0 3 chr9 106117507 106118171 -11744456 - HERVH LTR ERV1 -2564 5149 4488 1978 110 84 28 chr9 106119121 106119476 -11743151 + THE1C LTR MaLR 1 375 0 219 150 100 0 chr9 106119593 106119633 -11742994 + MIR SINE MIR 123 166 -96 449 309 123 39 chr9 106120385 106120718 -11741909 + L2 LINE L2 2867 3227 -86 207 287 0 32 chr9 106120799 106120893 -11741734 + G-rich Low_complexity Low_complexity 5 95 0 555 279 183 18 chr9 106121567 106121786 -11740841 + MIR SINE MIR 5 259 -3 482 316 30 39 chr9 106122443 106122674 -11739953 - MIR SINE MIR -27 235 7 963 261 107 54 chr9 106123704 106124152 -11738475 - MLT1J LTR MaLR -19 492 21 1129 315 87 34 chr9 106124269 106125989 -11736638 + L1M4 LINE L1 2890 4700 -1446 646 298 56 19 chr9 106126354 106126817 -11735810 + L1M4 LINE L1 2664 3143 -3003 280 0 0 0 chr9 106126828 106126862 -11735765 + HERVL-A1 LTR ERVL 5621 5654 0 3512 60 21 0 chr9 106126862 106127297 -11735330 + MLT2A1 LTR ERVL 1 444 0 1264 164 226 22 chr9 106127297 106127620 -11735007 - MSTD LTR MaLR -7 389 1 465 318 143 28 chr9 106127626 106127947 -11734680 + L1M4 LINE L1 3145 3502 -2644 900 207 13 0 chr9 106128273 106128423 -11734204 - FRAM SINE Alu -25 151 1 4215 166 32 1 chr9 106128514 106129292 -11733335 + L1MB2 LINE L1 5369 6170 -1 1204 288 63 35 chr9 106129349 106130067 -11732560 - L1MEc LINE L1 -1820 4720 3983 1451 221 90 52 chr9 106130075 106130532 -11732095 + MLT2B1 LTR ERVL 1 474 -46 314 98 20 0 chr9 106130542 106130593 -11732034 + (TC)n Simple_repeat Simple_repeat 2 53 0 312 131 0 0 chr9 106130625 106130681 -11731946 + MLT2C1 LTR ERVL 350 397 0 638 283 137 28 chr9 106130699 106131948 -11730679 - L1MEc LINE L1 -2583 3957 2524 3419 166 149 65 chr9 106132100 106132815 -11729812 - L1MC3 LINE L1 0 7785 6958 791 145 0 0 chr9 106132815 106132939 -11729688 - L1MA3 LINE L1 0 6305 6182 3419 166 149 65 chr9 106132939 106133170 -11729457 - L1MC3 LINE L1 -827 6958 6748 435 282 71 36 chr9 106133446 106133794 -11728833 - L1MEc LINE L1 -4564 1984 1627 3350 156 68 77 chr9 106133814 106134346 -11728281 - L1MB3 LINE L1 -2 6181 5646 2095 130 3 0 chr9 106134346 106134645 -11727982 + AluJb SINE Alu 1 300 -12 3350 156 68 77 chr9 106134645 106134814 -11727813 - L1MB3 LINE L1 -537 5646 5477 2034 107 0 66 chr9 106134814 106135132 -11727495 - AluSx SINE Alu -15 297 1 3350 156 68 77 chr9 106135132 106135302 -11727325 - L1MB3 LINE L1 -706 5477 5295 596 326 171 0 chr9 106135315 106135671 -11726956 - L1MEc LINE L1 -5700 830 414 * 708 291 94 30 chr9 106135670 106136041 -11726586 + L1M4 LINE L1 3622 4016 -2130 298 221 212 88 chr9 106136231 106136344 -11726283 + MIR SINE MIR 23 149 -113 181 286 0 0 chr9 106136375 106136417 -11726210 + MIR SINE MIR 218 259 -3 1383 146 9 9 chr9 106136799 106137025 -11725602 + AluSc SINE Alu 1 226 -83 751 220 102 0 chr9 106137290 106137476 -11725151 + MER63A DNA MER1_type 6 210 0 503 316 111 32 chr9 106138112 106138545 -11724082 + L2 LINE L2 1637 2103 -1211 312 314 12 0 chr9 106139273 106139359 -11723268 + MIR SINE MIR 70 156 -106 2505 85 3 0 chr9 106140436 106140741 -11721886 + AluSx SINE Alu 1 306 -6 538 278 24 6 chr9 106140772 106140941 -11721686 - MER5B DNA MER1_type -5 173 2 498 233 147 47 chr9 106141131 106141353 -11721274 + MIR SINE MIR 13 262 0 466 279 117 27 chr9 106141871 106142093 -11720534 - MIR SINE MIR -12 250 9 197 143 0 0 chr9 106142781 106142816 -11719811 - MIR SINE MIR -79 129 95 2052 112 31 7 chr9 106142817 106143104 -11719523 + AluSx SINE Alu 1 294 -18 239 256 200 11 chr9 106143375 106143465 -11719162 + MIR SINE MIR 46 152 -110 336 315 131 20 chr9 106143481 106143513 -11719114 + HAL1 LINE L1 981 1008 -1499 1631 133 11 130 chr9 106143513 106143866 -11718761 + AluJb SINE Alu 1 311 -1 336 315 131 20 chr9 106143866 106144089 -11718538 + HAL1 LINE L1 1008 1302 -1205 261 83 0 0 chr9 106144090 106144126 -11718501 + (GGAA)n Simple_repeat Simple_repeat 1 36 0 1142 223 160 52 chr9 106144484 106144941 -11717686 - MLT1H LTR MaLR -43 506 1 370 330 50 5 chr9 106144961 106145161 -11717466 + MIR SINE MIR 48 256 -6 253 222 33 78 chr9 106145819 106145909 -11716718 - L2 LINE L2 -3 3269 3184 238 253 12 12 chr9 106146350 106146433 -11716194 + (CA)n Simple_repeat Simple_repeat 1 83 0 189 0 0 0 chr9 106146460 106146481 -11716146 + (TG)n Simple_repeat Simple_repeat 1 21 0 358 212 82 0 chr9 106146534 106146619 -11716008 + L2 LINE L2 3162 3253 -19 367 320 12 6 chr9 106147659 106147831 -11714796 + GA-rich Low_complexity Low_complexity 2 174 0 289 374 6 0 chr9 106147881 106148047 -11714580 + (TG)n Simple_repeat Simple_repeat 1 167 0 369 346 0 29 chr9 106148092 106148228 -11714399 + L2 LINE L2 3141 3272 0 234 276 122 10 chr9 106148579 106148677 -11713950 + MIR SINE MIR 37 145 -63 282 284 14 0 chr9 106149148 106149222 -11713405 + MIR SINE MIR 67 141 -67 276 226 47 47 chr9 106149317 106149423 -11713204 + L1ME4a LINE L1 5957 6062 -59 2051 134 0 3 chr9 106149513 106149826 -11712801 + AluSq SINE Alu 1 312 0 285 256 107 16 chr9 106150298 106150419 -11712208 - MIR SINE MIR -111 151 20 224 226 19 0 chr9 106150809 106150862 -11711765 + (TCCA)n Simple_repeat Simple_repeat 3 56 0 215 352 0 0 chr9 106150869 106150940 -11711687 - L2 LINE L2 -10 3262 3192 189 222 0 0 chr9 106150987 106151023 -11711604 + L3 LINE CR1 632 667 -910 406 255 21 62 chr9 106151139 106151284 -11711343 + L2 LINE L2 3175 3313 0 909 172 0 32 chr9 106151307 106151647 -11710980 + (TGGA)n Simple_repeat Simple_repeat 1 329 0 211 325 26 44 chr9 106151709 106151823 -11710804 - L3 LINE CR1 -74 1503 1392 443 235 12 148 chr9 106151926 106152169 -11710458 - L3 LINE CR1 -387 1190 981 218 213 0 21 chr9 106152174 106152221 -11710406 + MIR SINE MIR 183 228 -34 239 337 112 0 chr9 106152643 106152732 -11709895 - L2 LINE L2 -16 3256 3158 513 255 83 25 chr9 106152815 106152972 -11709655 - MER96 DNA MER1_type? -2 173 8 296 237 273 40 chr9 106153720 106153918 -11708709 - MIR SINE MIR -15 247 4 641 228 105 53 chr9 106154126 106154472 -11708155 - MLT1J2 LTR MaLR -1 449 30 201 152 0 0 chr9 106154500 106154533 -11708094 + (TCCA)n Simple_repeat Simple_repeat 4 36 0 2421 77 3 3 chr9 106155072 106155370 -11707257 - AluSq SINE Alu -13 300 3 991 270 45 12 chr9 106156049 106156386 -11706241 + LTR16C LTR ERVL 144 491 0 293 320 75 58 chr9 106157385 106157742 -11704885 + MLT1I LTR MaLR 40 402 -7 1816 198 33 54 chr9 106157742 106158263 -11704364 - MER74A LTR ERVL 0 558 49 621 154 21 42 chr9 106158660 106158803 -11703824 - AluSc SINE Alu -2 307 168 2540 83 0 3 chr9 106158906 106159254 -11703373 - HERVH LTR ERV1 -7366 347 1 2562 68 131 2 chr9 106159256 106159653 -11702974 - LTR7 LTR ERV1 -2 448 1 365 229 0 0 chr9 106159817 106159900 -11702727 + MIR SINE MIR 103 185 -77 825 220 29 37 chr9 106160223 106160464 -11702163 - MIR SINE MIR -22 240 2 183 300 67 78 chr9 106161463 106161553 -11701074 - L2 LINE L2 0 3313 3225 603 288 40 0 chr9 106161576 106161774 -11700853 + MIR SINE MIR 49 254 -8 555 88 0 0 chr9 106162220 106162311 -11700316 + (TG)n Simple_repeat Simple_repeat 2 92 0 600 234 114 0 chr9 106162574 106162732 -11699895 - MIR SINE MIR -71 191 16 195 188 0 0 chr9 106162906 106162954 -11699673 + T-rich Low_complexity Low_complexity 1 48 0 225 108 0 0 chr9 106163805 106163842 -11698785 + (GA)n Simple_repeat Simple_repeat 1 37 0 828 308 127 16 chr9 106164791 106165435 -11697192 - L2 LINE L2 -704 2610 1895 627 257 90 25 chr9 106166336 106166581 -11696046 - MIR SINE MIR -1 261 1 1728 164 71 32 chr9 106166608 106166987 -11695640 - MSTD LTR MaLR 0 396 3 294 343 150 5 chr9 106167621 106167828 -11694799 + MIR SINE MIR 26 262 0 1319 227 91 32 chr9 106168272 106168672 -11693955 - MLT1C LTR MaLR -1 466 36 1955 142 7 23 chr9 106168672 106168974 -11693653 - AluSx SINE Alu -15 297 1 1319 227 91 32 chr9 106168974 106169013 -11693614 - MLT1C LTR MaLR -431 36 1 217 362 0 0 chr9 106169397 106169466 -11693161 - L2 LINE L2 0 3313 3245 1834 172 0 13 chr9 106169543 106169845 -11692782 + AluJb SINE Alu 1 298 -14 354 91 0 0 chr9 106170735 106170790 -11691837 + (TG)n Simple_repeat Simple_repeat 2 56 0 221 270 75 13 chr9 106171016 106171107 -11691520 + MIR SINE MIR 47 152 -56 331 278 10 0 chr9 106171831 106171928 -11690699 + MER96 DNA MER1_type? 1 98 -77 342 163 31 71 chr9 106172118 106172216 -11690411 - MLT1K LTR MaLR -55 533 440 1842 156 17 20 chr9 106172231 106172533 -11690094 - AluJo SINE Alu -7 305 5 430 249 15 107 chr9 106172566 106172666 -11689961 + MIR SINE MIR 5 82 -180 2055 114 4 4 chr9 106172666 106172986 -11689641 - AluSx SINE Alu 0 321 2 430 249 15 107 chr9 106172986 106173080 -11689547 + MIR SINE MIR 82 183 -79 22 35 0 0 chr9 106173429 106173458 -11689169 + AT_rich Low_complexity Low_complexity 1 29 0 466 305 40 11 chr9 106173523 106173697 -11688930 + MIR SINE MIR 80 258 -4 519 249 83 39 chr9 106173717 106173863 -11688764 + MER113 DNA MER1_type? 160 319 -202 1669 155 0 19 chr9 106173863 106174121 -11688506 + AluJo SINE Alu 38 290 -22 519 249 83 39 chr9 106174121 106174179 -11688448 + MER113 DNA MER1_type? 319 373 -148 280 310 90 0 chr9 106174342 106174487 -11688140 + MIR SINE MIR 69 226 -36 193 316 62 28 chr9 106175035 106175212 -11687415 + MIR3 SINE MIR 19 201 -7 333 301 10 3 chr9 106175343 106175493 -11687134 + MIR SINE MIR 10 153 -55 347 185 19 37 chr9 106176554 106176716 -11685911 + (TCTCTG)n Simple_repeat Simple_repeat 2 160 0 1012 240 71 113 chr9 106177285 106177763 -11684864 - MLT1G LTR MaLR 0 590 137 2451 57 0 0 chr9 106177763 106178090 -11684537 - AluY SINE Alu 0 329 3 1012 240 71 113 chr9 106178090 106178184 -11684443 - MLT1G LTR MaLR -453 137 41 331 339 55 16 chr9 106178297 106178480 -11684147 + MIR SINE MIR 16 205 -57 862 284 13 0 chr9 106178952 106179177 -11683450 + MIR SINE MIR 8 235 -27 652 133 0 0 chr9 106179332 106179430 -11683197 - AluJb SINE Alu -15 297 200 2834 233 46 52 chr9 106179462 106180165 -11682462 + L1MC5 LINE L1 6276 6982 -979 183 80 0 0 chr9 106180165 106180190 -11682437 + (CAAAC)n Simple_repeat Simple_repeat 4 28 0 2834 233 46 52 chr9 106180190 106180467 -11682160 + L1MC5 LINE L1 6982 7259 -702 1624 173 95 7 chr9 106180467 106180751 -11681876 + AluJb SINE Alu 1 309 -3 2834 233 46 52 chr9 106180751 106181068 -11681559 + L1MC5 LINE L1 7259 7560 -401 1205 171 0 0 chr9 106181068 106181249 -11681378 - AluJb SINE Alu -6 306 126 867 187 0 0 chr9 106181290 106181424 -11681203 - AluJb SINE Alu -176 136 3 683 222 82 44 chr9 106181426 106181791 -11680836 + L1MC5 LINE L1 7553 7931 -30 330 45 0 0 chr9 106181971 106182015 -11680612 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 2033 103 44 4 chr9 106182015 106182283 -11680344 - AluSx SINE Alu -33 279 1 829 234 143 65 chr9 106182872 106183397 -11679230 + MLT1G1 LTR MaLR 20 585 -10 357 257 139 28 chr9 106183538 106183682 -11678945 + MIR SINE MIR 14 173 -89 880 174 150 48 chr9 106183727 106183863 -11678764 + MER33 DNA MER1_type 1 122 -2463 2508 64 0 3 chr9 106183863 106184158 -11678469 - AluY SINE Alu -17 294 1 880 174 150 48 chr9 106184158 106184315 -11678312 + MER33 DNA MER1_type 122 324 0 262 308 64 0 chr9 106184328 106184406 -11678221 + MIR SINE MIR 180 262 0 442 330 34 6 chr9 106184496 106184672 -11677955 - MIR SINE MIR -6 256 76 508 285 140 6 chr9 106185632 106185811 -11676816 + MIR SINE MIR 54 256 -6 525 104 0 0 chr9 106185814 106185891 -11676736 + (ATG)n Simple_repeat Simple_repeat 2 78 0 322 353 45 6 chr9 106185903 106186059 -11676568 + MIR SINE MIR 78 239 -23 2088 119 14 30 chr9 106190464 106190825 -11671802 + THE1A LTR MaLR 1 355 0 286 307 110 8 chr9 106191256 106191383 -11671244 - MIR3 SINE MIR 0 208 69 822 232 97 24 chr9 106191553 106191979 -11670648 + MLT1F LTR MaLR 36 540 -2 209 335 150 33 chr9 106192626 106193085 -11669542 - L2 LINE L2 -812 2502 1990 344 331 114 0 chr9 106193249 106193424 -11669203 + L3 LINE CR1 1373 1567 -10 1982 167 0 3 chr9 106195123 106195429 -11667198 - AluJo SINE Alu -7 305 1 370 250 52 0 chr9 106195480 106195576 -11667051 + L2 LINE L2 3200 3300 -13 207 69 0 0 chr9 106195577 106195606 -11667021 + (TGAA)n Simple_repeat Simple_repeat 2 30 0 361 303 49 14 chr9 106196387 106196529 -11666098 + MIR SINE MIR 24 170 -92 1378 264 73 3 chr9 106196549 106196920 -11665707 - Charlie4a DNA MER1_type -20 488 92 420 369 34 17 chr9 106197207 106197440 -11665187 - MIR SINE MIR -13 249 13 2267 129 0 0 chr9 106197465 106197774 -11664853 + AluSx SINE Alu 1 309 -3 180 0 0 0 chr9 106198118 106198138 -11664489 + (T)n Simple_repeat Simple_repeat 1 20 0 191 369 49 8 chr9 106198223 106198345 -11664282 - MER5B DNA MER1_type -1 177 51 910 164 0 0 chr9 106198360 106198500 -11664127 - FRAM SINE Alu -36 140 1 630 275 69 5 chr9 106198654 106198872 -11663755 + MIR SINE MIR 31 262 0 235 259 17 0 chr9 106199259 106199317 -11663310 + MIR SINE MIR 57 115 -147 645 310 78 39 chr9 106199709 106200449 -11662178 + L1M4 LINE L1 4269 5034 -1112 28 48 0 0 chr9 106200679 106200721 -11661906 + AT_rich Low_complexity Low_complexity 1 42 0 1926 154 31 0 chr9 106200936 106201107 -11661520 - AluJo SINE Alu -10 302 117 291 85 0 0 chr9 106201107 106201154 -11661473 + (TTA)n Simple_repeat Simple_repeat 2 48 0 1926 154 31 0 chr9 106201154 106201275 -11661352 - AluJo SINE Alu -195 117 1 2096 247 10 0 chr9 106201439 106201933 -11660694 - L1ME2 LINE L1 -209 5955 5457 989 281 120 14 chr9 106202985 106203427 -11659200 - L2 LINE L2 0 3313 2825 298 279 259 27 chr9 106203755 106204049 -11658578 - L2 LINE L2 -31 3282 2921 213 300 110 0 chr9 106204097 106204197 -11658430 - L2 LINE L2 -511 2803 2693 1481 213 198 24 chr9 106204212 106204377 -11658250 + L1MD3 LINE L1 7402 7537 -458 1041 16 78 0 chr9 106204377 106204506 -11658121 - MER85 DNA T2_type 0 139 1 1481 213 198 24 chr9 106204506 106204846 -11657781 + L1MD3 LINE L1 7537 7995 0 420 20 0 0 chr9 106205827 106205876 -11656751 + (GA)n Simple_repeat Simple_repeat 1 49 0 204 213 0 0 chr9 106205897 106205944 -11656683 + (CAGAGA)n Simple_repeat Simple_repeat 2 48 0 556 325 134 0 chr9 106256000 106256283 -11606344 + L1M4 LINE L1 4300 4620 -1526 2161 127 0 37 chr9 106256373 106256695 -11605932 - AluSx SINE Alu -1 311 2 271 317 16 57 chr9 106256724 106256847 -11605780 + L2 LINE L2 3190 3307 -6 331 330 0 9 chr9 106256958 106257064 -11605563 + L1M4 LINE L1 4850 4954 -1192 2217 117 0 0 chr9 106257066 106257365 -11605262 + AluSx SINE Alu 1 299 -13 870 269 33 20 chr9 106257532 106257777 -11604850 + MIR SINE MIR 14 261 -1 1485 185 0 68 chr9 106259015 106259184 -11603443 - AluJo SINE Alu -10 302 123 2368 103 3 0 chr9 106259184 106259486 -11603141 - AluSq SINE Alu -10 303 1 1859 144 0 64 chr9 106259488 106259815 -11602812 - AluJb SINE Alu -6 306 1 1485 185 0 68 chr9 106259815 106259966 -11602661 - AluJo SINE Alu -190 122 1 3372 143 21 170 chr9 106259976 106260630 -11601997 - L1MC3 LINE L1 -7 7778 7329 2518 72 0 0 chr9 106260630 106260934 -11601693 - AluSc SINE Alu -5 304 1 3372 143 21 170 chr9 106260934 106261298 -11601329 - L1MC3 LINE L1 -456 7329 6912 731 216 10 35 chr9 106262823 106263022 -11599605 + MIR SINE MIR 33 226 -36 181 132 0 53 chr9 106263087 106263125 -11599502 - L2 LINE L2 -15 3298 3263 * 315 307 24 8 chr9 106263092 106263219 -11599408 - MIR SINE MIR -13 249 121 445 220 25 17 chr9 106263387 106263505 -11599122 - L1MC4 LINE L1 -2 8040 7922 229 322 22 0 chr9 106263534 106263624 -11599003 + L1MC4 LINE L1 6614 6705 -1337 665 206 93 20 chr9 106263649 106263853 -11598774 - L1MC4 LINE L1 -124 7918 7700 23 54 0 0 chr9 106263890 106263927 -11598700 + AT_rich Low_complexity Low_complexity 1 37 0 12901 209 44 36 chr9 106263931 106264051 -11598576 - L1MB4 LINE L1 -40 6376 6258 2699 94 6 6 chr9 106264051 106264412 -11598215 - THE1B LTR MaLR -3 361 1 12901 209 44 36 chr9 106264412 106268948 -11593679 - L1MB4 LINE L1 -158 6258 1649 258 32 0 0 chr9 106268948 106268979 -11593648 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 12901 209 44 36 chr9 106268979 106269816 -11592811 - L1MB4 LINE L1 -4767 1649 820 328 365 0 6 chr9 106271122 106271278 -11591349 + GA-rich Low_complexity Low_complexity 2 156 0 193 268 14 42 chr9 106271987 106272058 -11590569 - MIR SINE MIR -77 131 63 296 82 0 20 chr9 106272107 106272156 -11590471 + (TTCC)n Simple_repeat Simple_repeat 2 49 0 473 278 89 86 chr9 106272295 106272586 -11590041 + L2 LINE L2 2981 3272 0 2039 128 0 7 chr9 106272660 106272976 -11589651 + AluSx SINE Alu 1 314 0 2022 139 0 23 chr9 106273304 106273613 -11589014 + AluJo SINE Alu 1 302 -10 180 111 0 0 chr9 106273895 106273922 -11588705 + (T)n Simple_repeat Simple_repeat 1 27 0 1003 260 163 46 chr9 106273947 106274408 -11588219 - LTR33A LTR ERVL -8 515 1 401 227 109 8 chr9 106274582 106274701 -11587926 + L1MC5 LINE L1 7255 7385 -576 2071 130 0 0 chr9 106274722 106274999 -11587628 + AluSx SINE Alu 7 283 -29 28 0 0 0 chr9 106275018 106275046 -11587581 + AT_rich Low_complexity Low_complexity 1 28 0 1472 210 32 86 chr9 106275061 106275569 -11587058 + L1MC5 LINE L1 7404 7884 -77 1970 131 3 3 chr9 106275569 106275889 -11586738 - AluSx SINE Alu 0 322 3 1472 210 32 86 chr9 106275889 106275916 -11586711 + L1MC5 LINE L1 7884 7911 -50 191 170 21 0 chr9 106275996 106276043 -11586584 + (TA)n Simple_repeat Simple_repeat 1 48 0 277 325 57 35 chr9 106276043 106276391 -11586236 + L1M4 LINE L1 4140 4504 -1642 2410 107 0 0 chr9 106276391 106276699 -11585928 + AluY SINE Alu 1 308 -3 277 325 57 35 chr9 106276699 106276858 -11585769 + L1M4 LINE L1 4504 4658 -1488 275 284 11 11 chr9 106276933 106277028 -11585599 + L1MEd LINE L1 33 127 -5992 523 321 25 25 chr9 106277367 106277647 -11584980 + L1MEd LINE L1 544 823 -5296 1575 123 65 61 chr9 106277656 106277917 -11584710 + AluSx SINE Alu 1 262 -50 381 266 78 104 chr9 106277918 106278158 -11584469 + L1MEd LINE L1 960 1205 -5105 2470 65 0 0 chr9 106278158 106278451 -11584176 + AluY SINE Alu 2 294 -17 381 266 78 104 chr9 106278451 106278611 -11584016 + L1MEd LINE L1 1205 1368 -4942 1474 205 0 21 chr9 106278611 106278899 -11583728 + AluJo SINE Alu 1 282 -30 2308 111 0 0 chr9 106278899 106279196 -11583431 - AluSx SINE Alu -15 297 1 381 266 78 104 chr9 106279196 106279557 -11583070 + L1MEd LINE L1 1366 1757 -4553 1964 229 32 48 chr9 106279615 106280178 -11582449 + MLT2B3 LTR ERVL 1 554 0 310 181 14 14 chr9 106280324 106280396 -11582231 + MLT1H LTR MaLR 478 549 0 227 304 43 9 chr9 106280403 106280518 -11582109 + L1M4 LINE L1 4724 4842 -1304 2157 112 31 0 chr9 106280536 106280823 -11581804 + AluSx SINE Alu 1 296 -16 278 206 132 0 chr9 106282100 106282168 -11580459 + MLT1L LTR MaLR 3 79 -536 1561 159 83 10 chr9 106282210 106282499 -11580128 + AluJo SINE Alu 3 312 0 355 251 60 145 chr9 106282503 106282854 -11579773 + MLT1J LTR MaLR 111 431 -80 869 327 71 23 chr9 106283176 106284053 -11578574 - L1M4 LINE L1 -1544 4602 3684 379 259 101 55 chr9 106284210 106284594 -11578033 + MLT1H LTR MaLR 57 549 0 617 156 32 6 chr9 106285213 106285463 -11577164 + AluJ SINE Alu 1 305 -7 553 295 79 4 chr9 106285555 106285796 -11576831 + MER112 DNA MER1_type 1 259 -1 780 285 107 41 chr9 106285797 106286641 -11575986 - L1ME LINE L1 -520 5650 4747 334 276 57 86 chr9 106286666 106286945 -11575682 - L1M4 LINE L1 -2629 3517 3247 1948 137 55 27 chr9 106287097 106287462 -11575165 + THE1C LTR MaLR 1 375 0 22 70 0 0 chr9 106287467 106287510 -11575117 + AT_rich Low_complexity Low_complexity 1 43 0 351 292 41 32 chr9 106287911 106288250 -11574377 + L1M4 LINE L1 4528 4869 -1277 6090 89 25 17 chr9 106288272 106289158 -11573469 - L1PA11 LINE L1 0 6174 5282 290 320 27 0 chr9 106289159 106289309 -11573318 + L1M4 LINE L1 4881 5034 -1112 312 27 0 0 chr9 106289531 106289568 -11573059 + (A)n Simple_repeat Simple_repeat 1 37 0 877 248 110 7 chr9 106289573 106289995 -11572632 + MER45C DNA AcHobo 81 631 -322 517 211 108 57 chr9 106290258 106290452 -11572175 + MLT1H LTR MaLR 3 206 -343 1362 231 129 48 chr9 106290480 106290919 -11571708 + MLT2B1 LTR ERVL 1 484 -36 381 102 0 0 chr9 106290919 106290978 -11571649 + (CA)n Simple_repeat Simple_repeat 2 60 0 1362 231 129 48 chr9 106290978 106291019 -11571608 + MLT2B1 LTR ERVL 484 520 0 759 118 31 14 chr9 106291488 106292124 -11570503 + (TG)n Simple_repeat Simple_repeat 1 646 0 875 63 0 53 chr9 106292136 106292325 -11570302 + (TG)n Simple_repeat Simple_repeat 2 180 0 821 189 61 6 chr9 106293419 106293583 -11569044 + MLT1A2 LTR MaLR 1 173 -217 215 241 0 35 chr9 106293596 106293654 -11568973 + CT-rich Low_complexity Low_complexity 6 61 0 1007 170 16 16 chr9 106293669 106293851 -11568776 + MLT1A2 LTR MaLR 189 370 -4 191 35 0 35 chr9 106294193 106294222 -11568405 + (TAA)n Simple_repeat Simple_repeat 1 28 0 263 278 174 24 chr9 106294260 106294472 -11568155 - MIR SINE MIR -12 250 7 622 155 19 0 chr9 106295712 106295815 -11566812 + L1MB5 LINE L1 6070 6174 0 273 210 60 30 chr9 106295883 106295983 -11566644 + MIR SINE MIR 116 218 -44 312 288 124 30 chr9 106297196 106297526 -11565101 + HAL1b LINE L1 150 510 -838 2176 130 143 8 chr9 106297761 106298138 -11564489 - MSTA LTR MaLR 0 428 1 1381 258 106 23 chr9 106298207 106298811 -11563816 - L2 LINE L2 -1217 2097 1444 1276 138 39 17 chr9 106298929 106299161 -11563466 + MSTA LTR MaLR 192 428 0 1191 256 72 13 chr9 106299162 106299634 -11562993 - L2 LINE L2 -2314 1000 501 1554 199 51 80 chr9 106299659 106300070 -11562557 + MLT1H LTR MaLR 41 439 -110 847 150 7 21 chr9 106300112 106300252 -11562375 - MLT1E2 LTR MaLR 0 626 489 369 167 144 22 chr9 106300264 106300354 -11562273 - HAL1 LINE L1 -388 2119 2019 1648 147 83 0 chr9 106300354 106300654 -11561973 - L1MA4A LINE L1 -6 6297 5973 1434 180 46 0 chr9 106300936 106301241 -11561386 + MER33 DNA MER1_type 6 324 0 892 250 87 6 chr9 106301241 106301585 -11561042 + L2 LINE L2 1791 2162 -1152 278 0 0 51 chr9 106301585 106301624 -11561003 + (TTTTC)n Simple_repeat Simple_repeat 3 39 0 621 27 0 0 chr9 106301642 106301717 -11560910 + (TTCC)n Simple_repeat Simple_repeat 1 75 0 283 219 27 0 chr9 106301931 106302004 -11560623 + CT-rich Low_complexity Low_complexity 5 79 0 959 84 14 0 chr9 106302005 106302147 -11560480 + (TTCC)n Simple_repeat Simple_repeat 4 147 0 1661 167 36 0 chr9 106302148 106302423 -11560204 - AluJo SINE Alu -27 285 1 284 159 48 0 chr9 106302429 106302492 -11560135 + L2 LINE L2 2153 2218 -1096 1242 257 52 15 chr9 106302492 106302893 -11559734 + L2 LINE L2 2804 3219 -94 541 299 103 16 chr9 106302937 106303258 -11559369 - HAL1 LINE L1 -2158 349 1 270 56 0 0 chr9 106303302 106303338 -11559289 + (TG)n Simple_repeat Simple_repeat 2 37 0 983 282 67 29 chr9 106303338 106303788 -11558839 - L1ME LINE L1 -299 5822 5356 570 253 95 8 chr9 106303790 106304031 -11558596 + L1ME4a LINE L1 5855 6116 -5 1390 54 0 0 chr9 106304795 106304962 -11557665 + AluY SINE Alu 143 309 -2 1177 285 105 28 chr9 106305880 106306877 -11555750 + L2 LINE L2 1824 2897 -417 583 211 43 38 chr9 106307202 106307387 -11555240 - L1MC5 LINE L1 -34 7927 7742 1877 230 92 32 chr9 106307706 106308336 -11554291 + L1ME2 LINE L1 4591 5258 -888 1161 127 29 6 chr9 106308337 106308510 -11554117 - AluJo SINE Alu -15 297 121 943 217 69 27 chr9 106308510 106309307 -11553320 + L1ME2 LINE L1 5265 6152 -12 203 291 82 9 chr9 106309325 106309435 -11553192 - MIR3 SINE MIR -23 185 68 1795 181 0 14 chr9 106311887 106312180 -11550447 + AluJo SINE Alu 1 289 -23 2259 107 0 0 chr9 106312277 106312576 -11550051 + AluSx SINE Alu 14 312 0 229 211 53 0 chr9 106313090 106313147 -11549480 + THE1C LTR MaLR 171 230 -145 198 322 211 11 chr9 106313683 106313863 -11548764 + L3 LINE CR1 1361 1576 -1 676 278 28 20 chr9 106314078 106314326 -11548301 - MIR SINE MIR 0 262 13 260 343 0 18 chr9 106314474 106314640 -11547987 + CT-rich Low_complexity Low_complexity 1 163 0 300 347 6 6 chr9 106315807 106315980 -11546647 + (CA)n Simple_repeat Simple_repeat 2 174 0 248 254 0 0 chr9 106316627 106316686 -11545941 - MER116 DNA Mariner 0 80 22 372 285 102 56 chr9 106316743 106317224 -11545403 - L2 LINE L2 -188 3084 2590 341 308 128 0 chr9 106317244 106317400 -11545227 + MIR SINE MIR 87 262 0 221 263 232 10 chr9 106317735 106317834 -11544793 - MIR SINE MIR -67 141 21 257 277 65 60 chr9 106318204 106318388 -11544239 + L1ME4a LINE L1 5768 5952 -169 436 265 59 47 chr9 106318388 106318558 -11544069 + MER104 DNA Tc2 4 175 -5 317 257 0 0 chr9 106319045 106319115 -11543512 - MIR SINE MIR -5 257 188 2222 178 0 10 chr9 106319122 106319509 -11543118 + MLT1B LTR MaLR 8 390 0 453 243 150 58 chr9 106319543 106319716 -11542911 - MLT1G1 LTR MaLR 0 595 407 * 1177 232 35 14 chr9 106319710 106320032 -11542595 - MLT1G1 LTR MaLR -275 300 1 346 257 9 19 chr9 106320033 106320138 -11542489 - MIR SINE MIR -99 163 60 182 240 100 0 chr9 106320576 106320626 -11542001 + L2 LINE L2 3218 3272 0 188 156 22 22 chr9 106321209 106321254 -11541373 + L2 LINE L2 3141 3185 -87 268 380 7 0 chr9 106323456 106323593 -11539034 + (TG)n Simple_repeat Simple_repeat 1 138 0 198 0 0 0 chr9 106323627 106323649 -11538978 + (TG)n Simple_repeat Simple_repeat 2 23 0 1838 215 155 40 chr9 106323676 106324198 -11538429 + MLT1G LTR MaLR 1 582 -8 1422 245 97 37 chr9 106324319 106324638 -11537989 - L2 LINE L2 -21 3292 2994 1996 180 27 66 chr9 106324638 106324939 -11537688 + MLT1C LTR MaLR 4 280 -187 1862 168 0 0 chr9 106324939 106325236 -11537391 + AluJo SINE Alu 1 297 -15 1996 180 27 66 chr9 106325236 106325417 -11537210 + MLT1C LTR MaLR 280 467 0 1422 245 97 37 chr9 106325417 106325998 -11536629 - L2 LINE L2 -319 2994 2359 236 295 0 0 chr9 106325999 106326079 -11536548 + (TG)n Simple_repeat Simple_repeat 1 80 0 2198 117 7 0 chr9 106326164 106326473 -11536154 + AluSx SINE Alu 1 311 -1 264 122 0 0 chr9 106326579 106326620 -11536007 + (TG)n Simple_repeat Simple_repeat 1 41 0 1703 166 0 31 chr9 106326954 106327243 -11535384 + AluJb SINE Alu 1 280 -32 1085 85 23 6 chr9 106327243 106327419 -11535208 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 815 92 37 18 chr9 106327420 106327583 -11535044 + GA-rich Low_complexity Low_complexity 1 166 0 929 319 65 11 chr9 106327838 106328189 -11534438 + HERV16 LTR ERVL 2448 2817 -2179 962 278 46 22 chr9 106328426 106329033 -11533594 - L1MC/D LINE L1 -734 5625 5004 264 213 102 39 chr9 106329071 106329198 -11533429 + L1M4 LINE L1 3851 3985 -2161 935 263 109 102 chr9 106329504 106330051 -11532576 - L1MC/D LINE L1 -1217 4929 4387 2686 46 0 0 chr9 106330051 106330357 -11532270 - AluY SINE Alu -5 306 1 935 263 109 102 chr9 106330357 106331802 -11530825 - L1MC/D LINE L1 -1759 4387 2923 551 199 186 27 chr9 106331820 106332041 -11530586 + MIR SINE MIR 5 260 -2 257 345 54 30 chr9 106332388 106332556 -11530071 - L2 LINE L2 -814 2500 2329 3335 209 55 7 chr9 106332819 106333497 -11529130 + MER45B DNA AcHobo 1 710 -330 771 135 0 0 chr9 106333497 106333608 -11529019 + AluSq/x SINE Alu 5 115 -198 2205 118 0 0 chr9 106333613 106333909 -11528718 + AluSx SINE Alu 1 296 -16 1408 185 8 62 chr9 106333912 106334106 -11528521 + MER45B DNA AcHobo 703 871 -710 2430 86 3 0 chr9 106334106 106334410 -11528217 + AluSp SINE Alu 3 307 -6 1408 185 8 62 chr9 106334410 106334567 -11528060 + MER45B DNA AcHobo 871 1035 -5 375 230 72 37 chr9 106335238 106335444 -11527183 - L1M LINE L1 -784 5378 5161 2299 108 3 0 chr9 106335444 106335750 -11526877 - AluSx SINE Alu -5 307 1 375 230 72 37 chr9 106335750 106335794 -11526833 - L1M LINE L1 -1001 5161 5120 1802 174 3 3 chr9 106336671 106337007 -11525620 - AluJb SINE Alu 0 336 1 693 81 0 0 chr9 106337202 106337266 -11525361 - THE1B LTR MaLR 0 364 301 612 163 28 7 chr9 106337266 106337407 -11525220 - Charlie5 DNA MER1_type -2 2610 2467 2379 91 54 20 chr9 106337407 106337759 -11524868 - THE1B LTR MaLR 0 364 1 1163 320 28 17 chr9 106337840 106338421 -11524206 - HAL1b LINE L1 -705 643 57 1230 205 108 14 chr9 106338423 106338701 -11523926 - AluSx SINE Alu -3 309 6 1248 172 98 22 chr9 106339298 106339450 -11523177 + MER33 DNA MER1_type 1 131 -2454 2333 95 72 20 chr9 106339450 106339796 -11522831 + THE1B LTR MaLR 1 364 0 1248 172 98 22 chr9 106339796 106339954 -11522673 + MER33 DNA MER1_type 131 324 0 21 0 0 0 chr9 106340775 106340796 -11521831 + AT_rich Low_complexity Low_complexity 1 21 0 366 194 75 0 chr9 106340883 106340976 -11521651 - HsTC2 DNA Tc2 0 1900 1801 183 329 43 0 chr9 106341030 106341100 -11521527 + MIR SINE MIR 138 210 -52 393 244 0 0 chr9 106341120 106341210 -11521417 - L1ME LINE L1 -362 5800 5711 228 304 54 0 chr9 106341217 106341309 -11521318 + L1ME LINE L1 5347 5443 -678 238 158 183 24 chr9 106341350 106341432 -11521195 + L1ME LINE L1 5725 5819 -302 2385 93 0 0 chr9 106341696 106341986 -11520641 + AluSg SINE Alu 1 290 -20 551 292 97 57 chr9 106341990 106343119 -11519508 + L1 LINE L1 2677 3851 -2295 449 275 42 107 chr9 106343272 106344155 -11518472 + L1 LINE L1 3839 4677 -1469 1547 166 60 21 chr9 106344426 106344709 -11517918 + AluJo SINE Alu 1 294 -18 561 181 9 9 chr9 106345043 106345148 -11517479 + MER106B DNA MER1_type 1 105 -954 837 290 103 13 chr9 106346085 106346958 -11515669 - L1ME3 LINE L1 -306 5856 4909 2073 223 72 49 chr9 106346968 106347741 -11514886 - L1MC5 LINE L1 -38 7923 7133 1510 300 81 52 chr9 106347947 106348522 -11514105 - L1ME3 LINE L1 -1465 4681 4124 811 151 16 0 chr9 106348522 106348648 -11513979 - FLAM_C SINE Alu -1 132 5 1510 300 81 52 chr9 106348648 106348735 -11513892 - L1ME3 LINE L1 -2022 4124 4041 1790 136 61 64 chr9 106348735 106349111 -11513516 + THE1C LTR MaLR 1 375 0 1510 300 81 52 chr9 106349111 106350031 -11512596 - L1ME3 LINE L1 -2105 4041 3052 585 310 70 15 chr9 106350110 106350639 -11511988 - L1ME3 LINE L1 -3276 2870 2313 1850 164 0 16 chr9 106350694 106350999 -11511628 + AluJo SINE Alu 3 302 -10 459 35 0 0 chr9 106351609 106351666 -11510961 + (TG)n Simple_repeat Simple_repeat 2 58 0 790 275 77 56 chr9 106351863 106353194 -11509433 - L1MC5 LINE L1 -751 5395 4548 1768 102 4 0 chr9 106353397 106353623 -11509004 - AluSq SINE Alu -85 228 2 599 195 26 116 chr9 106353691 106353881 -11508746 - MER5B DNA MER1_type -5 173 1 922 179 12 6 chr9 106354407 106354580 -11508047 + MER5A DNA MER1_type 2 175 -14 300 296 0 10 chr9 106354601 106354699 -11507928 - MER5B DNA MER1_type -81 97 1 522 130 28 0 chr9 106354933 106355041 -11507586 + CT-rich Low_complexity Low_complexity 1 111 0 282 29 0 0 chr9 106355041 106355076 -11507551 + (TG)n Simple_repeat Simple_repeat 2 36 0 1560 113 0 22 chr9 106355961 106356192 -11506435 + L1MA3 LINE L1 5666 5891 -414 973 72 0 36 chr9 106356194 106356321 -11506306 + AluY SINE Alu 169 292 -19 2469 95 105 8 chr9 106356321 106356711 -11505916 + L1MA3 LINE L1 5878 6305 0 973 72 0 36 chr9 106356711 106356722 -11505905 + AluY SINE Alu 292 302 -9 2010 186 41 72 chr9 106356728 106357245 -11505382 + MLT1D LTR MaLR 1 501 -4 189 0 0 0 chr9 106357486 106357507 -11505120 + (TAAAA)n Simple_repeat Simple_repeat 5 25 0 206 267 116 41 chr9 106357938 106358084 -11504543 - MIR SINE MIR -11 251 95 297 316 20 26 chr9 106358417 106358569 -11504058 + L2 LINE L2 2698 2848 -466 1286 243 95 11 chr9 106358595 106359048 -11503579 - HAL1 LINE L1 -4 2503 2013 1713 226 67 120 chr9 106359058 106359560 -11503067 - HAL1 LINE L1 -710 1797 1270 1818 172 7 3 chr9 106359560 106359856 -11502771 - AluJb SINE Alu -15 297 1 1713 226 67 120 chr9 106359856 106360110 -11502517 - HAL1 LINE L1 -1237 1270 1004 1479 144 0 9 chr9 106360110 106360332 -11502295 + AluJb SINE Alu 90 309 -3 1713 226 67 120 chr9 106360332 106360648 -11501979 - HAL1 LINE L1 -1503 1004 817 1794 123 63 23 chr9 106360648 106360948 -11501679 + AluSx SINE Alu 1 312 0 1713 226 67 120 chr9 106360948 106361341 -11501286 - HAL1 LINE L1 -1690 817 405 861 153 0 7 chr9 106361386 106361523 -11501104 + AluJb SINE Alu 157 292 -20 650 219 48 66 chr9 106361595 106361823 -11500804 - HAL1 LINE L1 -2271 236 13 380 330 30 43 chr9 106361823 106362056 -11500571 + L2 LINE L2 2835 3064 -208 212 174 0 29 chr9 106362414 106362483 -11500144 + (TCTCTG)n Simple_repeat Simple_repeat 6 72 0 276 337 9 9 chr9 106362485 106362636 -11499991 + CT-rich Low_complexity Low_complexity 1 151 0 205 302 0 0 chr9 106363094 106363147 -11499480 + G-rich Low_complexity Low_complexity 2 54 0 235 308 0 0 chr9 106363191 106363269 -11499358 + (CA)n Simple_repeat Simple_repeat 1 78 0 527 310 34 102 chr9 106363324 106363647 -11498980 - L2 LINE L2 -47 3225 2925 1922 241 72 36 chr9 106363689 106364028 -11498599 + L1ME3A LINE L1 4679 5004 -1158 2008 141 0 3 chr9 106364028 106364325 -11498302 - AluSx SINE Alu -16 296 1 1922 241 72 36 chr9 106364325 106365159 -11497468 + L1ME3A LINE L1 5004 5882 -280 1996 278 101 21 chr9 106365379 106366333 -11496294 + HAL1 LINE L1 777 1806 -701 355 279 103 64 chr9 106366587 106366791 -11495836 + HAL1 LINE L1 2214 2425 -82 526 371 34 21 chr9 106366797 106367263 -11495364 - L2 LINE L2 -575 2739 2268 490 134 12 12 chr9 106367671 106367753 -11494874 - AluJ/FLAM SINE Alu -229 83 2 217 349 0 18 chr9 106367779 106367888 -11494739 + (CATATA)n Simple_repeat Simple_repeat 6 112 0 1815 201 101 20 chr9 106368226 106368670 -11493957 + MLT1D LTR MaLR 1 480 -25 207 100 0 0 chr9 106368675 106368705 -11493922 + (CTTG)n Simple_repeat Simple_repeat 2 31 0 1857 117 11 4 chr9 106368705 106368986 -11493641 - AluSx SINE Alu -29 283 1 427 297 14 22 chr9 106369833 106369971 -11492656 + MIR SINE MIR 86 222 -40 339 309 25 6 chr9 106370447 106370609 -11492018 + (TA)n Simple_repeat Simple_repeat 1 165 0 283 216 15 119 chr9 106370614 106370748 -11491879 + HAL1b LINE L1 1195 1314 -34 1606 87 0 0 chr9 106370911 106371119 -11491508 - L1PA13 LINE L1 -428 5735 5528 3305 79 2 9 chr9 106371120 106371576 -11491051 + L1PA13 LINE L1 5708 6160 -3 24 53 0 0 chr9 106371582 106371620 -11491007 + AT_rich Low_complexity Low_complexity 1 38 0 1057 260 74 87 chr9 106371646 106372254 -11490373 + L1MC4 LINE L1 4459 5058 -1088 2047 252 49 77 chr9 106372346 106373284 -11489343 - L1ME LINE L1 -5157 913 2 2061 102 13 13 chr9 106373312 106373616 -11489011 + AluSx SINE Alu 1 304 -8 1100 284 87 25 chr9 106373646 106374261 -11488366 + L1MC4 LINE L1 5183 5355 -791 2196 109 0 3 chr9 106374261 106374563 -11488064 + AluSq SINE Alu 1 301 -12 1100 284 87 25 chr9 106374563 106374615 -11488012 + L1MC4 LINE L1 5355 5402 -744 2334 89 0 3 chr9 106374877 106375190 -11487437 + AluSx SINE Alu 1 312 0 630 153 0 0 chr9 106375282 106375380 -11487247 - AluJo SINE Alu -177 135 38 479 172 43 0 chr9 106375387 106375480 -11487147 + L1ME LINE L1 502 598 -5472 1477 173 43 0 chr9 106375482 106375736 -11486891 - AluJo SINE Alu -47 265 1 359 243 45 79 chr9 106375791 106375968 -11486659 - L1ME4a LINE L1 -16 6105 5935 312 275 117 8 chr9 106375955 106376075 -11486552 + L1MC4 LINE L1 6612 6744 -1298 * 737 181 19 26 chr9 106376086 106376241 -11486386 + L1MA10 LINE L1 6180 6333 -1 487 208 42 0 chr9 106376587 106376683 -11485944 + MLT1A2 LTR MaLR 1 100 -274 493 263 157 8 chr9 106376695 106376950 -11485677 + L1MC4 LINE L1 7749 8041 -1 961 271 200 23 chr9 106377021 106377126 -11485501 + L2 LINE L2 2636 2721 -592 2227 104 3 0 chr9 106377126 106377435 -11485192 - AluSx SINE Alu -2 310 1 961 271 200 23 chr9 106377435 106377896 -11484731 + L2 LINE L2 2721 3308 -5 295 244 47 4 chr9 106379757 106379882 -11482745 - MIR SINE MIR -6 256 82 469 323 122 31 chr9 106380647 106380876 -11481751 - MIR SINE MIR 0 262 13 438 283 71 0 chr9 106380887 106381000 -11481627 - L2 LINE L2 -7 3265 3145 2021 103 21 0 chr9 106382390 106382672 -11479955 + AluSx SINE Alu 1 288 -24 743 229 22 54 chr9 106382820 106383043 -11479584 + L1ME3A LINE L1 5950 6165 -5 546 262 131 71 chr9 106384077 106384443 -11478184 + L2 LINE L2 2920 3307 -6 467 261 8 8 chr9 106384664 106384783 -11477844 + MIR SINE MIR 82 200 -62 599 241 35 7 chr9 106385240 106385385 -11477242 + MIR SINE MIR 49 197 -65 2367 73 3 0 chr9 106385519 106385819 -11476808 + AluSx SINE Alu 1 301 -11 256 211 70 14 chr9 106385878 106385949 -11476678 + MER116 DNA Mariner 2 76 -4 948 263 74 50 chr9 106386474 106386797 -11475830 + MLT1I LTR MaLR 75 405 -4 1568 192 10 3 chr9 106386993 106387121 -11475506 + AluJo SINE Alu 1 127 -185 320 0 25 0 chr9 106387121 106387161 -11475466 + (TA)n Simple_repeat Simple_repeat 1 41 0 1568 192 10 3 chr9 106387161 106387329 -11475298 + AluJo SINE Alu 127 299 -13 782 275 83 42 chr9 106387642 106388433 -11474194 + L1MC4a LINE L1 5112 5824 -297 234 0 0 0 chr9 106388548 106388574 -11474053 + (TGG)n Simple_repeat Simple_repeat 3 28 0 670 246 84 0 chr9 106388845 106389012 -11473615 - MLT1J2 LTR MaLR -4 446 266 742 167 107 7 chr9 106389030 106389180 -11473447 - MLT1J2 LTR MaLR -285 165 1 922 225 0 0 chr9 106389271 106389431 -11473196 + LTR39 LTR ERV1 619 778 -5 3223 206 62 3 chr9 106390186 106390874 -11471753 + MER45B DNA AcHobo 1 729 -311 1179 82 0 0 chr9 106390879 106391038 -11471589 + AluSq SINE Alu 145 303 -10 1458 165 50 24 chr9 106391043 106391340 -11471287 + MER45B DNA AcHobo 734 1038 -2 2009 122 3 0 chr9 106391347 106391635 -11470992 - AluSx SINE Alu -21 291 3 866 231 29 14 chr9 106391731 106391939 -11470688 + MIR SINE MIR 15 225 -37 2305 128 23 21 chr9 106392222 106392611 -11470016 - MLT1B LTR MaLR 0 390 1 228 35 0 0 chr9 106392683 106392712 -11469915 + (TCTG)n Simple_repeat Simple_repeat 1 29 0 322 271 36 57 chr9 106393431 106393530 -11469097 - MIR SINE MIR -36 226 129 1982 134 3 0 chr9 106393530 106393822 -11468805 + AluJb SINE Alu 1 293 -19 322 271 36 57 chr9 106393822 106393862 -11468765 - MIR SINE MIR -133 129 90 2082 74 0 4 chr9 106393893 106394164 -11468463 - AluSq SINE Alu -41 272 3 298 312 58 13 chr9 106395049 106395203 -11467424 - L1MEd LINE L1 -5913 206 46 1699 188 39 33 chr9 106395222 106395584 -11467043 + MLT1A1 LTR MaLR 2 365 0 467 252 33 124 chr9 106395596 106395734 -11466893 + MIR SINE MIR 43 151 -111 1761 123 3 50 chr9 106395734 106396036 -11466591 - AluSx SINE Alu -24 288 1 467 252 33 124 chr9 106396036 106396139 -11466488 + MIR SINE MIR 151 262 0 385 234 10 72 chr9 106396116 106396227 -11466400 - MIR SINE MIR -61 147 69 * 390 269 112 28 chr9 106396232 106396462 -11466165 + MLT1G1 LTR MaLR 324 594 -1 2704 111 23 56 chr9 106396544 106396586 -11466041 - MSTA LTR MaLR 0 428 386 2310 79 30 0 chr9 106396586 106396889 -11465738 + AluSx SINE Alu 1 312 0 2704 111 23 56 chr9 106396889 106397289 -11465338 - MSTA LTR MaLR -42 386 1 670 259 212 25 chr9 106397290 106397792 -11464835 - L2 LINE L2 0 3313 2723 989 268 77 30 chr9 106397793 106398155 -11464472 - MLT1J2 LTR MaLR 0 450 72 841 136 8 8 chr9 106398676 106398808 -11463819 + FLAM_C SINE Alu 2 133 0 1088 179 0 0 chr9 106399119 106399292 -11463335 + FAM SINE Alu 1 173 -2 1123 243 65 13 chr9 106400163 106400472 -11462155 - L2 LINE L2 -807 2507 2183 2279 105 0 3 chr9 106400909 106401223 -11461404 + AluSq SINE Alu 1 313 0 4279 115 36 0 chr9 106401346 106402054 -11460573 + L1MC1 LINE L1 5184 5912 -421 4586 133 3 29 chr9 106402055 106402782 -11459845 - MER50 LTR ERV1 -23 711 4 2464 147 24 12 chr9 106402782 106403205 -11459422 + L1MC1 LINE L1 5906 6333 0 626 166 5 17 chr9 106404506 106404778 -11457849 + AluJo SINE Alu 4 340 0 456 344 82 20 chr9 106404782 106405026 -11457601 + MIR SINE MIR 3 261 -1 267 214 243 87 chr9 106405055 106405158 -11457469 - L2 LINE L2 -3 3269 3151 234 0 0 0 chr9 106405944 106405970 -11456657 + (T)n Simple_repeat Simple_repeat 1 26 0 390 186 88 15 chr9 106405991 106406123 -11456504 + MLT1J1 LTR MaLR 70 137 -309 302 302 159 12 chr9 106406117 106406362 -11456265 + MLT1L LTR MaLR 335 615 0 * 455 264 43 81 chr9 106406370 106406605 -11456022 - L1ME4a LINE L1 -69 6052 5827 476 279 81 0 chr9 106406614 106406775 -11455852 - L1ME4a LINE L1 -363 5758 5585 498 271 149 69 chr9 106406784 106407288 -11455339 - L2 LINE L2 -15 3298 2836 1728 170 0 10 chr9 106407288 106407618 -11455009 - AluJb SINE Alu 0 312 2 498 271 149 69 chr9 106407618 106407650 -11454977 - L2 LINE L2 -477 2836 2808 1610 179 28 3 chr9 106407650 106407941 -11454686 - AluJo SINE Alu -14 298 1 498 271 149 69 chr9 106407941 106408066 -11454561 - L2 LINE L2 -505 2808 2576 228 293 24 12 chr9 106408092 106408216 -11454411 + (TA)n Simple_repeat Simple_repeat 1 129 -40 2212 94 0 0 chr9 106408216 106408513 -11454114 + L1PA8 LINE L1 5868 6164 -8 228 293 24 12 chr9 106408513 106408555 -11454072 + (TA)n Simple_repeat Simple_repeat 129 169 0 1654 201 0 0 chr9 106408762 106409070 -11453557 - AluJo SINE Alu 0 312 5 353 320 17 21 chr9 106409143 106409377 -11453250 - L1M4 LINE L1 -1543 4603 4371 288 0 0 0 chr9 106409877 106409890 -11452737 + (TAA)n Simple_repeat Simple_repeat 1 45 0 288 0 0 0 chr9 106409890 106409922 -11452705 + (TAA)n Simple_repeat Simple_repeat 2 33 0 575 287 94 47 chr9 106409967 106410560 -11452067 - L1M4 LINE L1 -1804 4342 3722 602 177 7 61 chr9 106410633 106410780 -11451847 + MER103 DNA DNA 11 149 -17 344 313 98 49 chr9 106410816 106411040 -11451587 - L1M4 LINE L1 -2400 3746 3512 25 31 0 0 chr9 106411976 106412008 -11450619 + GC_rich Low_complexity Low_complexity 1 32 0 29 47 0 0 chr9 106412093 106412136 -11450491 + GC_rich Low_complexity Low_complexity 1 43 0 380 76 38 25 chr9 106412141 106412220 -11450407 + (CCG)n Simple_repeat Simple_repeat 3 82 0 31 68 0 0 chr9 106412245 106412304 -11450323 + GC_rich Low_complexity Low_complexity 1 59 0 234 62 0 0 chr9 106412340 106412372 -11450255 + (CCG)n Simple_repeat Simple_repeat 2 33 0 252 164 49 0 chr9 106412431 106412492 -11450135 + (CGGG)n Simple_repeat Simple_repeat 4 67 0 23 92 0 0 chr9 106412493 106412558 -11450069 + GC_rich Low_complexity Low_complexity 1 65 0 775 303 37 12 chr9 106413840 106414081 -11448546 + MIR SINE MIR 15 261 -1 1678 141 39 33 chr9 106414151 106414457 -11448170 - AluJo SINE Alu -4 308 1 395 326 37 51 chr9 106414492 106414707 -11447920 + MIR SINE MIR 6 217 -45 400 247 0 0 chr9 106414835 106414920 -11447707 - MER69 DNA AcHobo -1079 147 63 267 31 0 0 chr9 106415679 106415711 -11446916 + (CA)n Simple_repeat Simple_repeat 2 33 0 314 336 8 30 chr9 106415800 106415931 -11446696 - MER5A DNA MER1_type -22 167 40 * 440 296 0 22 chr9 106415822 106415957 -11446670 + MER5A DNA MER1_type 56 187 -2 4668 156 34 27 chr9 106415982 106416972 -11445655 - L1MB3 LINE L1 -14 6169 5171 445 262 50 71 chr9 106416988 106417178 -11445449 - MIR SINE MIR -67 141 3 185 300 140 30 chr9 106417433 106417633 -11444994 + L2 LINE L2 2869 3090 -182 251 313 35 13 chr9 106417733 106417847 -11444780 + MER5A DNA MER1_type 68 178 0 237 298 0 0 chr9 106418182 106418239 -11444388 - L2 LINE L2 -3 3269 3213 231 280 0 0 chr9 106418307 106418357 -11444270 + (TG)n Simple_repeat Simple_repeat 1 50 0 2189 107 0 0 chr9 106418460 106418759 -11443868 - AluSg SINE Alu -11 299 1 1909 116 11 0 chr9 106418770 106419073 -11443554 - AluSx SINE Alu 0 309 4 423 56 0 0 chr9 106419218 106419272 -11443355 + (TCCA)n Simple_repeat Simple_repeat 3 56 0 659 284 17 0 chr9 106419299 106419475 -11443152 + MER5A DNA MER1_type 6 184 -5 330 271 199 6 chr9 106419584 106419750 -11442877 - L2 LINE L2 -907 2407 2210 258 32 0 0 chr9 106422125 106422156 -11440471 + (CA)n Simple_repeat Simple_repeat 1 31 0 213 217 22 0 chr9 106423881 106423927 -11438700 + CT-rich Low_complexity Low_complexity 2 48 0 223 185 111 0 chr9 106424235 106424289 -11438338 - L2 LINE L2 -4 3309 3250 603 286 20 49 chr9 106425153 106425356 -11437271 - MIR SINE MIR -14 248 52 337 269 201 20 chr9 106426138 106426287 -11436340 + MIR3 SINE MIR 22 197 -11 1038 152 13 110 chr9 106426988 106427225 -11435402 - MER20 DNA MER1_type 0 219 6 2078 102 0 3 chr9 106429008 106429320 -11433307 + AluSx SINE Alu 1 311 0 21 0 0 0 chr9 106429421 106429442 -11433185 + AT_rich Low_complexity Low_complexity 1 21 0 620 250 98 27 chr9 106429499 106429683 -11432944 - L2 LINE L2 -1 3312 3116 1815 172 82 3 chr9 106430038 106430405 -11432222 - MSTD LTR MaLR 0 396 1 201 211 0 39 chr9 106431292 106431344 -11431283 - L2 LINE L2 -2 3311 3262 537 309 135 53 chr9 106431379 106432594 -11430033 - L2 LINE L2 -457 2857 1544 950 118 82 12 chr9 106434106 106434276 -11428351 - L1MD1 LINE L1 0 6636 6455 1732 227 82 40 chr9 106434276 106434801 -11427826 - MER74B LTR ERVL 0 622 76 4061 178 39 14 chr9 106434806 106435862 -11426765 - L1MD1 LINE L1 -162 6474 5391 1870 112 121 27 chr9 106435862 106436192 -11426435 - MSTC LTR MaLR -67 361 1 4027 201 41 67 chr9 106436192 106436858 -11425769 - L1MD1 LINE L1 -1419 5121 4498 2071 125 0 3 chr9 106436858 106437162 -11425465 - AluSg SINE Alu -7 303 1 4027 201 41 67 chr9 106437162 106437702 -11424925 - L1MD1 LINE L1 -2042 4498 3946 2141 176 35 46 chr9 106437704 106438163 -11424464 - L1MD1 LINE L1 -6085 455 2 260 279 0 25 chr9 106438717 106438796 -11423831 - L1ME4a LINE L1 -104 6017 5941 646 224 14 7 chr9 106438819 106438962 -11423665 + MIR SINE MIR 85 228 -34 312 332 87 19 chr9 106439010 106439218 -11423409 - L1MB8 LINE L1 -264 5914 5693 337 274 127 47 chr9 106439244 106439584 -11423043 - L1MB8 LINE L1 -536 5628 5262 1170 174 60 0 chr9 106439799 106440017 -11422610 + L1MC4a LINE L1 7138 7368 -440 461 238 14 28 chr9 106440076 106440219 -11422408 + L1MC4 LINE L1 7902 8042 0 2028 123 23 3 chr9 106441158 106441467 -11421160 - L1MB5 LINE L1 -6 6168 5854 332 278 48 43 chr9 106441511 106441698 -11420929 - L1MB8 LINE L1 -1444 4702 4515 9781 207 59 67 chr9 106441810 106441983 -11420644 - L1ME1 LINE L1 0 6235 6062 2267 155 38 17 chr9 106441983 106442402 -11420225 + MSTA LTR MaLR 1 428 0 9781 207 59 67 chr9 106442402 106444436 -11418191 - L1ME1 LINE L1 -173 6062 4013 563 157 231 0 chr9 106444436 106444544 -11418083 - FLAM_C SINE Alu 0 133 1 9781 207 59 67 chr9 106444544 106445674 -11416953 - L1ME1 LINE L1 -2222 4013 2875 587 289 128 5 chr9 106445674 106445861 -11416766 - MER58C DNA MER1_type -3 212 3 9781 207 59 67 chr9 106445861 106447119 -11415508 - L1ME1 LINE L1 -3360 2875 1561 1025 168 22 6 chr9 106447127 106447306 -11415321 + AluJb SINE Alu 123 304 -8 750 284 70 3 chr9 106447315 106447642 -11414985 - L1ME1 LINE L1 -4842 1554 1206 354 369 39 32 chr9 106447661 106448158 -11414469 + L1M4 LINE L1 3119 3654 -2492 2288 91 0 0 chr9 106448279 106448577 -11414050 + AluSx SINE Alu 1 298 -14 234 374 101 0 chr9 106448832 106449011 -11413616 + L2 LINE L2 2590 2786 -528 215 214 71 36 chr9 106449017 106449073 -11413554 + L2 LINE L2 3214 3271 -1 268 228 16 114 chr9 106449335 106449458 -11413169 + L2 LINE L2 3158 3268 -4 180 77 0 0 chr9 106450112 106450138 -11412489 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2276 59 0 3 chr9 106450140 106450426 -11412201 - AluY SINE Alu -26 285 1 1862 83 0 58 chr9 106450428 106450705 -11411922 - AluY SINE Alu -16 295 35 2077 117 0 26 chr9 106450707 106451015 -11411612 - AluSx SINE Alu -12 300 1 301 347 65 24 chr9 106451168 106451292 -11411335 - L2 LINE L2 -1 3271 3143 338 263 149 50 chr9 106451733 106451995 -11410632 - L1ME4a LINE L1 -4 6117 5830 244 282 189 19 chr9 106453051 106453241 -11409386 - MIR SINE MIR -32 230 7 512 284 129 22 chr9 106453476 106453701 -11408926 - MIR SINE MIR -12 250 2 22 0 0 0 chr9 106453892 106453914 -11408713 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 106454087 106454108 -11408519 + AT_rich Low_complexity Low_complexity 1 21 0 284 190 0 25 chr9 106454532 106454611 -11408016 - MER53 DNA DNA -88 101 25 * 316 208 0 14 chr9 106454553 106454625 -11408002 + MER53 DNA DNA 119 189 0 530 295 88 18 chr9 106454915 106455019 -11407608 - L1ME3A LINE L1 -128 5993 5898 2220 104 10 0 chr9 106455019 106455327 -11407300 - AluSp SINE Alu -2 311 1 530 295 88 18 chr9 106455327 106455581 -11407046 - L1ME3A LINE L1 -223 5898 5618 300 205 109 115 chr9 106455705 106455754 -11406873 - L1ME3A LINE L1 -821 5325 5277 2123 113 3 0 chr9 106455754 106456056 -11406571 - AluSx SINE Alu -9 303 1 300 205 109 115 chr9 106456056 106456162 -11406465 - L1ME3A LINE L1 -869 5277 5171 241 300 47 20 chr9 106456307 106456457 -11406170 - L1ME3A LINE L1 -1089 5057 4904 550 264 52 92 chr9 106457183 106457240 -11405387 - MIR SINE MIR -10 252 194 3538 182 27 23 chr9 106457240 106457983 -11404644 - L1MB7 LINE L1 -9 6175 5430 550 264 52 92 chr9 106457983 106458175 -11404452 - MIR SINE MIR -68 194 13 286 308 63 13 chr9 106459179 106459338 -11403289 - L1ME4a LINE L1 0 6121 5955 203 381 71 0 chr9 106459548 106459674 -11402953 + L2 LINE L2 2846 2980 -333 504 212 61 71 chr9 106460267 106460479 -11402148 - HAL1 LINE L1 0 2507 2298 1572 247 55 49 chr9 106460492 106460716 -11401911 - HAL1 LINE L1 -310 2197 1976 27 49 0 0 chr9 106460716 106460757 -11401870 + AT_rich Low_complexity Low_complexity 1 41 0 1572 247 55 49 chr9 106460757 106461386 -11401241 - HAL1 LINE L1 -531 1976 1335 560 261 104 57 chr9 106461473 106461895 -11400732 - HAL1 LINE L1 -1322 1185 744 373 310 133 73 chr9 106461916 106462548 -11400079 - HAL1 LINE L1 -1821 686 17 208 338 0 0 chr9 106462625 106462693 -11399934 + (TG)n Simple_repeat Simple_repeat 1 68 0 491 291 24 0 chr9 106462967 106463094 -11399533 - L2 LINE L2 0 3272 3143 458 61 15 0 chr9 106463970 106464036 -11398591 + (TC)n Simple_repeat Simple_repeat 2 68 0 256 167 19 0 chr9 106464572 106464626 -11398001 + HsTC2 DNA Tc2 31 85 -1813 191 244 44 0 chr9 106467262 106467307 -11395320 - MIR SINE MIR -76 132 86 44 20 0 0 chr9 106467419 106467470 -11395157 + AT_rich Low_complexity Low_complexity 1 51 0 2137 108 0 14 chr9 106469920 106470206 -11392421 - AluSx SINE Alu -29 283 2 1961 156 7 7 chr9 106470209 106470511 -11392116 - AluJb SINE Alu -10 302 1 439 320 56 15 chr9 106470563 106470760 -11391867 - L2 LINE L2 0 3313 3109 650 291 38 57 chr9 106473063 106473328 -11389299 - MIR SINE MIR -1 261 2 3819 164 37 45 chr9 106473392 106474211 -11388416 - L1MB8 LINE L1 -15 6163 5352 771 267 39 5 chr9 106475597 106475803 -11386824 - MIR SINE MIR -14 248 36 743 233 11 72 chr9 106475869 106476053 -11386574 + L1MC5 LINE L1 6972 7137 -824 2272 93 24 0 chr9 106476053 106476344 -11386283 + AluSg SINE Alu 1 298 -12 743 233 11 72 chr9 106476344 106476421 -11386206 + L1MC5 LINE L1 7137 7217 -744 237 254 63 0 chr9 106476579 106476642 -11385985 + L1MC5 LINE L1 7302 7368 -593 373 266 83 42 chr9 106476804 106477093 -11385534 + L1MC5 LINE L1 7631 7931 -30 455 297 228 19 chr9 106477900 106478264 -11384363 - L2 LINE L2 -31 3282 2843 260 314 50 16 chr9 106478386 106478507 -11384120 + L2 LINE L2 3143 3267 -5 569 293 81 47 chr9 106478522 106478931 -11383696 - MLT1K LTR MaLR -8 580 158 190 277 0 75 chr9 106483497 106483591 -11379036 + L2 LINE L2 3009 3095 -177 284 270 184 0 chr9 106483745 106483908 -11378719 - L1ME4a LINE L1 -2 6119 5927 518 328 104 25 chr9 106485025 106485382 -11377245 + L3 LINE CR1 519 903 -674 388 238 61 127 chr9 106485644 106485825 -11376802 + L3 LINE CR1 1304 1472 -105 1959 144 6 39 chr9 106487731 106488043 -11374584 + AluJb SINE Alu 2 303 -9 844 239 14 54 chr9 106489260 106489325 -11373302 - MIR SINE MIR -13 249 183 2398 95 7 3 chr9 106489325 106489629 -11372998 - AluSx SINE Alu -7 305 1 844 239 14 54 chr9 106489629 106489785 -11372842 - MIR SINE MIR -79 183 37 204 167 0 0 chr9 106491208 106491256 -11371371 + (TTA)n Simple_repeat Simple_repeat 2 49 0 333 85 0 0 chr9 106491426 106491473 -11371154 - Alu SINE Alu -9 291 245 180 299 58 35 chr9 106491474 106491561 -11371066 - MIR SINE MIR -76 132 44 423 0 0 0 chr9 106494674 106494721 -11367906 + (TG)n Simple_repeat Simple_repeat 2 48 0 477 276 92 17 chr9 106494740 106494914 -11367713 + MIR SINE MIR 70 256 -6 288 0 0 0 chr9 106495516 106495548 -11367079 + (TG)n Simple_repeat Simple_repeat 1 32 0 362 239 110 18 chr9 106495755 106495864 -11366763 + MIR SINE MIR 58 176 -86 305 247 47 35 chr9 106496164 106496249 -11366378 + L2 LINE L2 3175 3260 -12 2414 100 0 3 chr9 106496250 106496559 -11366068 - AluSg SINE Alu 0 310 3 233 247 75 54 chr9 106496694 106496787 -11365840 + L2 LINE L2 3199 3293 -20 253 233 70 0 chr9 106498330 106498416 -11364211 - L1ME4a LINE L1 -367 5795 5704 253 320 78 16 chr9 106498997 106499125 -11363502 - HAL1b LINE L1 -803 545 410 315 0 0 0 chr9 106499193 106499228 -11363399 + (TG)n Simple_repeat Simple_repeat 2 36 0 28 29 0 0 chr9 106500196 106500231 -11362396 + AT_rich Low_complexity Low_complexity 1 35 0 207 0 0 0 chr9 106500258 106500281 -11362346 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 881 119 60 8 chr9 106500281 106500404 -11362223 - AluJb SINE Alu -179 133 1 336 289 31 6 chr9 106500751 106500910 -11361717 - L1ME4a LINE L1 -277 5844 5682 357 269 289 9 chr9 106501078 106501517 -11361110 - L2 LINE L2 -16 3297 2735 379 293 24 0 chr9 106502075 106502198 -11360429 + MIR SINE MIR 103 228 -34 206 235 8 134 chr9 106502883 106503002 -11359625 + L3 LINE CR1 846 949 -628 * 477 346 63 61 chr9 106502987 106503432 -11359195 - L2 LINE L2 -1 3271 2826 194 265 48 12 chr9 106504128 106504211 -11358416 + L2 LINE L2 2964 3049 -223 723 207 7 0 chr9 106504713 106504853 -11357774 + MER45A DNA AcHobo 36 176 -2 477 236 34 47 chr9 106505115 106505263 -11357364 + MER5A DNA MER1_type 21 166 -23 1553 133 151 32 chr9 106505939 106506217 -11356410 - AluYa5 SINE Alu 0 311 1 325 261 148 44 chr9 106509792 106509995 -11352632 - L3 LINE CR1 -25 1552 1329 246 234 131 96 chr9 106510198 106510501 -11352126 + L1ME4a LINE L1 5633 5957 -164 848 188 30 18 chr9 106510501 106510666 -11351961 + FAM SINE Alu 1 167 -8 246 234 131 96 chr9 106510666 106510790 -11351837 + L1ME4a LINE L1 5957 6075 -46 1485 206 40 3 chr9 106511266 106511592 -11351035 + MER58B DNA MER1_type 4 341 0 201 121 0 0 chr9 106513323 106513356 -11349271 + (T)n Simple_repeat Simple_repeat 1 33 0 243 227 386 0 chr9 106516149 106516237 -11346390 - MER91C DNA MER1_type 0 140 19 208 255 61 41 chr9 106517114 106517212 -11345415 + MIR SINE MIR 35 134 -128 587 288 93 13 chr9 106517923 106518159 -11344468 - MIR SINE MIR 0 262 8 398 198 17 28 chr9 106518459 106518597 -11344030 + MIR SINE MIR 73 251 -11 209 231 48 135 chr9 106520251 106520355 -11342272 + L2 LINE L2 3168 3262 -10 230 209 0 30 chr9 106527831 106527898 -11334729 - MLT1I LTR MaLR 0 409 345 533 225 20 33 chr9 106527989 106528140 -11334487 - MLT1I LTR MaLR -104 305 157 256 310 119 37 chr9 106528525 106528668 -11333959 + MIR3 SINE MIR 23 176 -32 435 211 139 12 chr9 106528884 106529050 -11333577 - L1ME4a LINE L1 0 6121 5935 904 226 136 10 chr9 106529091 106529401 -11333226 - L1ME1 LINE L1 -5 6161 5813 282 273 130 57 chr9 106529487 106529860 -11332767 - L1ME1 LINE L1 -305 5816 5355 1925 313 124 55 chr9 106530010 106530673 -11331954 - L1ME1 LINE L1 -1014 5132 4516 2266 105 13 0 chr9 106530673 106530977 -11331650 - AluSx SINE Alu -4 308 1 1925 313 124 55 chr9 106530977 106531035 -11331592 - L1ME1 LINE L1 -1630 4516 4463 815 156 0 15 chr9 106531035 106531170 -11331457 - FLAM_C SINE Alu 0 133 1 1925 313 124 55 chr9 106531170 106532309 -11330318 - L1ME1 LINE L1 -1683 4463 3051 2312 119 0 6 chr9 106532309 106532621 -11330006 - AluSx SINE Alu -2 310 1 1925 313 124 55 chr9 106532621 106533011 -11329616 - L1ME1 LINE L1 -3095 3051 2689 2720 127 31 12 chr9 106533855 106534273 -11328354 - MSTB LTR MaLR 0 426 1 458 187 307 0 chr9 106535159 106535309 -11327318 - MIR SINE MIR 0 262 67 528 272 94 6 chr9 106536003 106536183 -11326444 - MIR SINE MIR -21 241 46 242 293 113 53 chr9 106536564 106536697 -11325930 + MIR SINE MIR 103 243 -19 318 333 136 14 chr9 106538361 106538508 -11324119 + MIR SINE MIR 48 212 -50 215 343 15 30 chr9 106539069 106539203 -11323424 + (CATG)n Simple_repeat Simple_repeat 1 132 0 389 0 59 0 chr9 106540531 106540582 -11322045 + (TTTTA)n Simple_repeat Simple_repeat 1 54 0 2246 75 0 4 chr9 106540582 106540860 -11321767 - AluSc SINE Alu -32 277 1 1835 173 0 10 chr9 106540861 106541162 -11321465 - AluJb SINE Alu -14 298 1 2322 106 6 3 chr9 106541254 106541565 -11321062 - AluSq SINE Alu -1 312 1 31 0 0 0 chr9 106542884 106542915 -11319712 + AT_rich Low_complexity Low_complexity 1 31 0 241 308 41 48 chr9 106545619 106545765 -11316862 + MIR3 SINE MIR 63 207 -1 740 246 28 42 chr9 106546128 106546343 -11316284 + MIR SINE MIR 41 252 -10 224 309 63 71 chr9 106549648 106549917 -11312710 - L2 LINE L2 -339 2975 2709 312 286 161 6 chr9 106550129 106550297 -11312330 + MIR SINE MIR 10 203 -59 187 178 133 0 chr9 106550620 106550663 -11311964 - MIR3 SINE MIR -7 201 153 652 184 7 41 chr9 106550663 106550810 -11311817 + MER5B DNA MER1_type 1 142 -36 257 314 29 0 chr9 106550926 106550996 -11311631 - L2 LINE L2 -2 3311 3240 225 330 0 36 chr9 106551229 106551341 -11311286 - MIR SINE MIR -150 112 5 1036 257 102 32 chr9 106551421 106551892 -11310735 - MLT1H LTR MaLR -3 546 43 2196 112 0 20 chr9 106552204 106552508 -11310119 - AluJb SINE Alu -14 298 1 1306 213 13 13 chr9 106552636 106552937 -11309690 - L1MC4 LINE L1 -529 7513 7213 1621 219 125 40 chr9 106552964 106553493 -11309134 - L1MC4 LINE L1 -925 7117 6544 626 314 62 83 chr9 106553507 106554169 -11308458 + L2 LINE L2 2110 2757 -557 969 184 0 16 chr9 106554383 106554568 -11308059 + AluJo SINE Alu 117 298 -14 320 307 128 28 chr9 106555255 106555434 -11307193 + MIR SINE MIR 58 254 -8 279 0 0 0 chr9 106556021 106556052 -11306575 + (TG)n Simple_repeat Simple_repeat 2 32 0 489 298 122 0 chr9 106556316 106556504 -11306123 - MIR SINE MIR -3 259 49 356 264 113 32 chr9 106556551 106556773 -11305854 - MIR SINE MIR -12 250 3 24 0 0 0 chr9 106558331 106558355 -11304272 + AT_rich Low_complexity Low_complexity 1 24 0 330 309 17 60 chr9 106558467 106558677 -11303950 - MIR SINE MIR -52 210 11 2240 125 32 73 chr9 106558762 106559203 -11303424 - MSTA LTR MaLR 0 428 6 202 256 26 26 chr9 106559979 106560057 -11302570 - L3 LINE CR1 -285 1292 1215 1002 347 154 15 chr9 106560188 106560975 -11301652 - L3 LINE CR1 -384 1193 298 754 172 0 37 chr9 106561114 106561248 -11301379 + AluJb SINE Alu 2 130 -182 273 273 47 6 chr9 106561874 106561970 -11300657 + (TA)n Simple_repeat Simple_repeat 2 93 -87 2567 53 0 3 chr9 106561970 106562272 -11300355 + AluY SINE Alu 2 302 -9 273 273 47 6 chr9 106562272 106562335 -11300292 + (TA)n Simple_repeat Simple_repeat 93 171 -9 2289 163 77 20 chr9 106562335 106562740 -11299887 - MSTA LTR MaLR 0 428 1 273 273 47 6 chr9 106562740 106562751 -11299876 + (TA)n Simple_repeat Simple_repeat 171 180 0 2616 110 6 6 chr9 106562785 106563149 -11299478 - THE1B LTR MaLR 0 364 1 935 155 32 0 chr9 106563387 106563542 -11299085 + L1MB5 LINE L1 5998 6157 -17 233 250 43 69 chr9 106564517 106564633 -11297994 + MIR SINE MIR 32 144 -64 223 182 68 0 chr9 106566237 106566281 -11296346 - MIR SINE MIR -196 66 20 206 329 29 79 chr9 106566922 106567062 -11295565 + L2 LINE L2 3122 3254 -18 195 341 156 7 chr9 106572010 106572145 -11290482 - MIR SINE MIR -18 244 90 236 344 32 24 chr9 106572520 106572645 -11289982 + MIR SINE MIR 105 230 -32 2049 127 0 22 chr9 106572852 106573166 -11289461 + AluSx SINE Alu 1 307 -5 189 0 0 0 chr9 106573719 106573740 -11288887 + (A)n Simple_repeat Simple_repeat 1 21 0 367 325 26 0 chr9 106577595 106577746 -11284881 - L1MC4a LINE L1 -1973 5835 5681 1311 359 156 22 chr9 106577784 106577934 -11284693 - L1MC4a LINE L1 -747 5399 5270 1786 163 3 10 chr9 106577934 106578234 -11284393 + AluJo SINE Alu 1 298 -14 1311 359 156 22 chr9 106578234 106579295 -11283332 - L1MC4a LINE L1 -876 5270 4206 355 316 13 0 chr9 106579483 106579638 -11282989 - L1MC4a LINE L1 -2149 3997 3841 2023 157 0 0 chr9 106580284 106580596 -11282031 + AluJb SINE Alu 1 312 0 492 251 68 124 chr9 106580773 106581215 -11281412 - Charlie8 DNA MER1_type -1954 463 47 672 184 4 14 chr9 106581559 106581842 -11280785 + (CCCA)n Simple_repeat Simple_repeat 1 279 0 250 258 75 11 chr9 106581974 106582067 -11280560 - L2 LINE L2 -221 3051 2953 244 321 75 9 chr9 106582436 106582542 -11280085 - L2 LINE L2 -14 3258 3146 224 237 227 10 chr9 106583219 106583316 -11279311 - MER5A DNA MER1_type -4 185 68 255 296 45 0 chr9 106584030 106584118 -11278509 + MIR SINE MIR 62 153 -55 230 336 114 71 chr9 106584248 106584388 -11278239 + MER5B DNA MER1_type 24 169 -9 489 255 188 0 chr9 106585876 106586025 -11276602 + MER5A DNA MER1_type 7 183 -6 185 360 75 19 chr9 106586591 106586752 -11275875 - MIR SINE MIR -3 259 90 318 50 0 0 chr9 106591029 106591069 -11271558 + (TG)n Simple_repeat Simple_repeat 1 40 0 233 322 151 26 chr9 106593197 106593349 -11269278 + MIR SINE MIR 48 218 -44 637 312 118 72 chr9 106593862 106594694 -11267933 + L2 LINE L2 2264 3172 -100 2371 93 0 10 chr9 106594694 106595007 -11267620 - AluSg SINE Alu 0 310 1 637 312 118 72 chr9 106595007 106595109 -11267518 + L2 LINE L2 3172 3268 -4 188 289 22 44 chr9 106595254 106595344 -11267283 + L2 LINE L2 3167 3254 -18 2013 106 23 13 chr9 106595603 106595904 -11266723 - AluSq SINE Alu -9 304 1 727 211 18 29 chr9 106596303 106596474 -11266153 + MER5B DNA MER1_type 5 173 -5 2260 95 0 19 chr9 106596482 106596798 -11265829 + AluSg SINE Alu 1 310 0 545 267 148 32 chr9 106597086 106597512 -11265115 + L1M4 LINE L1 2489 2865 -3281 1685 156 13 48 chr9 106597512 106597826 -11264801 + AluJo SINE Alu 1 303 -9 545 267 148 32 chr9 106597826 106598111 -11264516 + L1M4 LINE L1 2865 3282 -2864 2415 72 7 0 chr9 106598214 106598520 -11264107 + AluSp SINE Alu 3 310 -3 318 273 161 14 chr9 106598824 106598967 -11263660 - MIR SINE MIR -79 183 20 26 30 0 0 chr9 106599752 106599785 -11262842 + GC_rich Low_complexity Low_complexity 1 33 0 262 368 80 12 chr9 106600041 106600204 -11262423 + MIR SINE MIR 15 188 -74 392 280 121 32 chr9 106600232 106600389 -11262238 + MIR SINE MIR 89 259 -3 397 278 0 43 chr9 106601264 106601379 -11261248 + MIR SINE MIR 50 159 -103 415 270 77 52 chr9 106604217 106604450 -11258177 - MIR SINE MIR -4 258 20 598 236 139 42 chr9 106604671 106604786 -11257841 - L1MC4a LINE L1 -1895 5913 5811 313 189 0 133 chr9 106604786 106604876 -11257751 + MER116 DNA Mariner 2 79 -1 598 236 139 42 chr9 106604876 106605019 -11257608 - L1MC4a LINE L1 -1997 5811 5630 289 321 83 9 chr9 106605021 106605130 -11257497 + MIR3 SINE MIR 77 193 -15 219 114 0 0 chr9 106606329 106606364 -11256263 + (A)n Simple_repeat Simple_repeat 1 35 0 220 239 90 0 chr9 106607494 106607561 -11255066 + MIR SINE MIR 65 137 -125 195 129 0 0 chr9 106608677 106608708 -11253919 + (T)n Simple_repeat Simple_repeat 1 31 0 2029 196 10 3 chr9 106609246 106609634 -11252993 - L1MB3 LINE L1 0 6183 5793 444 243 108 48 chr9 106610516 106610784 -11251843 + L1MC4 LINE L1 7759 8042 0 2083 142 0 0 chr9 106611208 106611518 -11251109 + AluSx SINE Alu 1 310 -2 271 278 33 22 chr9 106611529 106611619 -11251008 + L2 LINE L2 3204 3294 -19 180 0 0 0 chr9 106614872 106614892 -11247735 + (A)n Simple_repeat Simple_repeat 1 20 0 202 219 0 0 chr9 106615213 106615254 -11247373 + GA-rich Low_complexity Low_complexity 3 43 0 777 153 34 129 chr9 106615865 106615947 -11246680 + MER53 DNA DNA 1 89 -100 2036 129 20 0 chr9 106615947 106616249 -11246378 - AluSx SINE Alu -4 308 1 777 153 34 129 chr9 106616249 106616375 -11246252 + MER53 DNA DNA 89 189 0 323 275 55 0 chr9 106616490 106616588 -11246039 + MIR3 SINE MIR 57 160 -48 199 317 73 0 chr9 106616682 106616764 -11245863 - MIR3 SINE MIR -43 165 78 479 320 95 12 chr9 106617337 106617590 -11245037 - L3b LINE CR1 -197 1386 1113 282 265 44 0 chr9 106617892 106617960 -11244667 + MIR SINE MIR 83 153 -55 201 343 14 14 chr9 106620388 106620534 -11242093 + L2 LINE L2 2639 2784 -530 201 250 0 60 chr9 106620649 106620733 -11241894 + L2 LINE L2 2973 3051 -221 2095 126 3 0 chr9 106620858 106621168 -11241459 + AluSx SINE Alu 1 311 -1 634 130 20 0 chr9 106621195 106621295 -11241332 + AluSg/x SINE Alu 210 311 -1 481 255 121 7 chr9 106621310 106621459 -11241168 - MIR SINE MIR -12 250 85 270 339 153 11 chr9 106621458 106621542 -11241085 + MIR SINE MIR 60 131 -131 * 2052 199 45 14 chr9 106621542 106621965 -11240662 - MER63B DNA MER1_type 0 436 1 270 339 153 11 chr9 106621965 106622057 -11240570 + MIR SINE MIR 131 261 -1 827 289 186 19 chr9 106622588 106622698 -11239929 - L2 LINE L2 -42 3271 3181 257 75 25 0 chr9 106622698 106622738 -11239889 + (TG)n Simple_repeat Simple_repeat 2 42 0 827 289 186 19 chr9 106622738 106622760 -11239867 - L2 LINE L2 -132 3181 3164 526 62 12 12 chr9 106622760 106622840 -11239787 - MADE1 DNA Mariner 0 80 1 827 289 186 19 chr9 106622840 106623304 -11239323 - L2 LINE L2 -149 3164 2592 471 321 86 51 chr9 106623303 106623610 -11239017 + L2 LINE L2 2919 3240 -32 * 1860 145 0 20 chr9 106623610 106623936 -11238691 + AluSx SINE Alu 1 312 0 471 321 86 51 chr9 106623936 106623964 -11238663 + L2 LINE L2 3240 3266 -6 214 342 0 40 chr9 106624036 106624112 -11238515 - L2 LINE L2 -57 3215 3143 1980 167 0 0 chr9 106624537 106624848 -11237779 + AluJb SINE Alu 1 311 -1 2134 113 3 0 chr9 106624971 106625273 -11237354 + AluSq SINE Alu 1 303 -10 814 173 0 20 chr9 106625413 106625563 -11237064 - Tigger7 DNA MER2_type -2 2485 2339 230 105 26 0 chr9 106625554 106625592 -11237035 - Tigger7 DNA MER2_type -2138 349 311 * 230 152 91 0 chr9 106625721 106625787 -11236840 - L2 LINE L2 -195 3077 3006 243 294 45 98 chr9 106625858 106626103 -11236524 + L2 LINE L2 2852 3083 -189 1895 108 42 11 chr9 106626120 106626406 -11236221 - AluSx SINE Alu -17 295 1 661 251 199 47 chr9 106626948 106627330 -11235297 + MLT1H LTR MaLR 110 549 0 845 145 0 0 chr9 106627379 106627517 -11235110 + FRAM SINE Alu 38 175 -1 309 215 44 95 chr9 106627521 106627590 -11235037 + L1MC4a LINE L1 5814 5885 -1923 2205 93 6 10 chr9 106627590 106627901 -11234726 + AluSg SINE Alu 1 310 0 309 215 44 95 chr9 106627901 106627915 -11234712 + L1MC4a LINE L1 5885 5898 -1910 2130 101 3 13 chr9 106627915 106628222 -11234405 + AluSx SINE Alu 1 304 -8 309 215 44 95 chr9 106628222 106628295 -11234332 + L1MC4a LINE L1 5898 5963 -1845 2450 62 0 0 chr9 106628474 106628778 -11233849 - AluY SINE Alu -7 304 1 625 289 6 0 chr9 106629744 106629900 -11232727 + MER45A DNA AcHobo 2 158 -20 180 358 25 0 chr9 106629935 106630016 -11232611 - L3 LINE CR1 -82 1495 1413 186 217 228 11 chr9 106630073 106630165 -11232462 + MIR SINE MIR 30 141 -67 816 81 0 0 chr9 106630349 106630460 -11232167 + AluY SINE Alu 1 111 -200 356 265 34 54 chr9 106630714 106630861 -11231766 - L2 LINE L2 -54 3259 3116 248 268 0 92 chr9 106630988 106631130 -11231497 + MIR SINE MIR 60 188 -74 234 191 0 0 chr9 106631426 106631473 -11231154 + (TGAA)n Simple_repeat Simple_repeat 2 48 0 213 39 0 0 chr9 106631477 106631503 -11231124 + (A)n Simple_repeat Simple_repeat 1 26 0 852 127 8 15 chr9 106631526 106631660 -11230967 + AluSq/x SINE Alu 1 133 -180 5664 153 33 11 chr9 106631675 106632858 -11229769 + L1MC2 LINE L1 5133 6343 -1 2144 96 7 7 chr9 106632906 106633207 -11229420 + AluSp SINE Alu 1 301 -12 1239 124 31 0 chr9 106633712 106633937 -11228690 - L1 LINE L1 -1657 4489 4258 299 267 14 0 chr9 106634089 106634168 -11228459 + MIR SINE MIR 81 161 -47 255 234 13 13 chr9 106634251 106634328 -11228299 - MIR SINE MIR -12 250 174 576 213 0 0 chr9 106634332 106634426 -11228201 - MER81 DNA DNA -1 113 20 302 167 91 0 chr9 106634439 106634505 -11228122 - MIR SINE MIR -111 151 80 349 331 63 11 chr9 106635066 106635241 -11227386 - MIR SINE MIR -77 185 2 202 297 115 27 chr9 106635248 106635396 -11227231 + MIR SINE MIR 76 236 -26 540 284 111 0 chr9 106635513 106635703 -11226924 - MIR SINE MIR -13 249 39 194 299 110 31 chr9 106635945 106636072 -11226555 - L2 LINE L2 -223 3090 2954 246 279 40 84 chr9 106636108 106636334 -11226293 - L2 LINE L2 -68 3204 2989 749 285 216 19 chr9 106637981 106638617 -11224010 - L2 LINE L2 -14 3299 2524 239 337 0 0 chr9 106638863 106638949 -11223678 - MIR SINE MIR -10 252 167 1188 181 18 57 chr9 106639078 106639229 -11223398 + L1MD2 LINE L1 5795 5933 -426 1821 137 7 14 chr9 106639229 106639547 -11223080 - AluSx SINE Alu 0 316 1 1188 181 18 57 chr9 106639547 106639676 -11222951 + L1MD2 LINE L1 5933 6065 -294 1038 181 32 5 chr9 106639778 106639994 -11222633 - MLT2B1 LTR ERVL -295 225 4 32165 142 41 43 chr9 106639996 106640432 -11222195 - ERVL-B1 LTR ERVL -6 5758 5323 2164 104 0 0 chr9 106640432 106640720 -11221907 + AluSq SINE Alu 2 289 -24 32165 142 41 43 chr9 106640720 106644619 -11218008 - ERVL-B1 LTR ERVL -441 5323 1418 1517 184 17 109 chr9 106644619 106645021 -11217606 - MLT1A1 LTR MaLR 0 365 1 32165 142 41 43 chr9 106645021 106645107 -11217520 - ERVL-B1 LTR ERVL -4346 1418 1333 2039 128 6 13 chr9 106645107 106645419 -11217208 - AluSx SINE Alu -2 310 1 32165 142 41 43 chr9 106645419 106645441 -11217186 - ERVL-B1 LTR ERVL -4431 1333 1312 2326 99 0 3 chr9 106645441 106645753 -11216874 - AluSx SINE Alu -1 311 1 231 36 0 0 chr9 106645755 106645783 -11216844 + (TA)n Simple_repeat Simple_repeat 2 29 0 2054 65 0 29 chr9 106645783 106646058 -11216569 - AluY SINE Alu -21 290 24 32165 142 41 43 chr9 106646058 106646070 -11216557 - ERVL-B1 LTR ERVL -4452 1312 1301 285 116 130 0 chr9 106646070 106646139 -11216488 + Charlie5 DNA MER1_type 2471 2548 -64 1934 93 0 19 chr9 106646139 106646407 -11216220 - AluSq SINE Alu -50 263 1 32165 142 41 43 chr9 106646407 106647619 -11215008 - ERVL-B1 LTR ERVL -4461 1303 25 1934 59 0 0 chr9 106647620 106647857 -11214770 + AluY SINE Alu 1 237 -74 26 0 0 0 chr9 106647912 106647938 -11214689 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr9 106648213 106648234 -11214393 + AT_rich Low_complexity Low_complexity 1 21 0 201 74 0 0 chr9 106648342 106648369 -11214258 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 2019 106 7 0 chr9 106648371 106648683 -11213944 + AluSx SINE Alu 1 314 0 245 273 74 25 chr9 106648814 106648935 -11213692 + L1ME4a LINE L1 5974 6100 -21 236 337 72 0 chr9 106649132 106649215 -11213412 + MER5A DNA MER1_type 31 119 -70 188 188 62 0 chr9 106649632 106649680 -11212947 - MIR3 SINE MIR -49 159 109 251 324 35 49 chr9 106650541 106650591 -11212036 + MIR SINE MIR 106 155 -107 1881 92 124 72 chr9 106650591 106650793 -11211834 - THE1B LTR MaLR 0 364 135 2368 90 0 0 chr9 106650793 106651103 -11211524 + AluY SINE Alu 1 310 -1 1881 92 124 72 chr9 106651103 106651246 -11211381 - THE1B LTR MaLR -229 135 1 251 324 35 49 chr9 106651246 106651337 -11211290 + MIR SINE MIR 155 245 -17 224 170 0 43 chr9 106651348 106651395 -11211232 + C-rich Low_complexity Low_complexity 5 49 0 1823 166 23 0 chr9 106652764 106653066 -11209561 + AluJb SINE Alu 4 312 0 856 176 0 0 chr9 106653082 106653213 -11209414 + FLAM_A SINE Alu 1 131 -2 216 297 54 0 chr9 106653306 106653380 -11209247 + L2 LINE L2 2984 3061 -252 1675 152 22 4 chr9 106653617 106653917 -11208710 - AluSx SINE Alu 0 305 1 547 128 13 0 chr9 106654096 106654174 -11208453 - AluSq/x SINE Alu -195 117 39 296 296 0 0 chr9 106654181 106654262 -11208365 + LTR16C LTR ERVL 408 488 -3 200 333 0 0 chr9 106654433 106654493 -11208134 + L2 LINE L2 3204 3263 -9 1637 133 56 4 chr9 106654651 106654921 -11207706 + AluJb SINE Alu 1 284 -28 192 160 0 0 chr9 106654921 106654966 -11207661 + (TA)n Simple_repeat Simple_repeat 1 45 0 1661 151 0 75 chr9 106654976 106655110 -11207517 + AluSx SINE Alu 2 145 -187 2256 115 0 0 chr9 106655110 106655422 -11207205 + AluSx SINE Alu 1 312 0 1661 151 0 75 chr9 106655422 106655641 -11206986 + AluSx SINE Alu 145 332 0 2047 113 10 13 chr9 106655651 106655960 -11206667 + AluSx SINE Alu 1 308 -4 925 206 44 5 chr9 106656484 106656688 -11205939 + MER20 DNA MER1_type 2 213 -6 404 306 83 21 chr9 106656764 106656957 -11205670 + MIR SINE MIR 46 250 -12 1894 196 49 29 chr9 106656967 106657415 -11205212 + MLT1C LTR MaLR 6 462 -5 352 288 34 6 chr9 106658458 106658581 -11204046 + MIR SINE MIR 15 139 -69 373 326 54 16 chr9 106658671 106658855 -11203772 - MIR SINE MIR -6 256 66 831 117 8 0 chr9 106658863 106658983 -11203644 - FRAM SINE Alu -11 165 45 183 42 0 0 chr9 106660130 106660154 -11202473 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 618 272 0 28 chr9 106660710 106660890 -11201737 - MIR SINE MIR -70 192 18 2194 84 19 22 chr9 106660896 106661207 -11201420 - AluSx SINE Alu -2 310 1 250 365 100 6 chr9 106661346 106661516 -11201111 - MIR SINE MIR 0 262 77 220 337 43 0 chr9 106662131 106662223 -11200404 + MIR SINE MIR 20 115 -147 388 277 109 0 chr9 106662284 106662403 -11200224 - MIR SINE MIR -78 184 53 222 91 0 0 chr9 106662578 106662611 -11200016 - MIR SINE MIR -113 149 117 1699 150 46 0 chr9 106662769 106663049 -11199578 + AluJb SINE Alu 1 293 -19 2210 89 7 0 chr9 106663049 106663342 -11199285 + AluSp SINE Alu 1 295 -18 528 134 0 12 chr9 106663483 106663565 -11199062 - FRAM SINE Alu -62 114 34 2254 110 0 0 chr9 106663822 106664123 -11198504 - AluSx SINE Alu -11 301 1 334 304 50 116 chr9 106664145 106664502 -11198125 - L2 LINE L2 -8 3264 2940 2110 128 3 0 chr9 106664502 106664806 -11197821 + AluSx SINE Alu 1 305 -7 334 304 50 116 chr9 106664806 106664889 -11197738 - L2 LINE L2 -332 2940 2853 208 326 158 10 chr9 106664915 106665111 -11197516 - L2 LINE L2 -465 2849 2625 200 225 0 0 chr9 106665199 106665239 -11197388 + GA-rich Low_complexity Low_complexity 1 40 0 302 299 35 40 chr9 106665602 106665776 -11196851 - L2 LINE L2 -1465 1849 1677 202 366 204 5 chr9 106666048 106666239 -11196388 + MIR SINE MIR 26 254 -8 196 351 0 27 chr9 106666259 106666333 -11196294 - L2 LINE L2 -557 2757 2686 230 281 0 0 chr9 106666903 106666960 -11195667 + (TAA)n Simple_repeat Simple_repeat 2 58 0 308 269 11 32 chr9 106666987 106667080 -11195547 - MIR SINE MIR -88 174 84 285 318 63 10 chr9 106667261 106667430 -11195197 + MIR SINE MIR 59 242 -20 273 278 118 42 chr9 106668009 106668153 -11194474 + MIR3 SINE MIR 17 171 -37 231 310 0 14 chr9 106668856 106668927 -11193700 - L1M4 LINE L1 -1792 4354 4285 583 301 158 66 chr9 106669449 106669521 -11193106 + L1ME4a LINE L1 5605 5669 -452 1812 163 3 3 chr9 106669521 106669815 -11192812 + AluJo SINE Alu 9 302 -10 234 0 0 0 chr9 106669816 106669842 -11192785 + (TA)n Simple_repeat Simple_repeat 1 26 0 583 301 158 66 chr9 106669842 106670152 -11192475 + L1ME4a LINE L1 5669 6040 -81 1736 151 47 27 chr9 106670152 106670451 -11192176 + AluJb SINE Alu 1 305 -7 583 301 158 66 chr9 106670451 106670520 -11192107 + L1ME4a LINE L1 6040 6101 -20 266 274 0 43 chr9 106670529 106670646 -11191981 - MIR SINE MIR -3 259 148 904 294 130 8 chr9 106670647 106671038 -11191589 - MLT1K LTR MaLR -2 586 148 432 309 0 43 chr9 106671149 106671234 -11191393 - MIR SINE MIR -106 156 80 1734 154 0 17 chr9 106671234 106671526 -11191101 + AluJb SINE Alu 6 292 -20 432 309 0 43 chr9 106671526 106671602 -11191025 - MIR SINE MIR -182 80 2 413 290 172 5 chr9 106671927 106672148 -11190479 - MIR SINE MIR 0 262 5 2005 131 3 16 chr9 106672624 106672956 -11189671 + AluSx SINE Alu 3 312 0 283 204 51 10 chr9 106672957 106673055 -11189572 + L1ME4a LINE L1 6008 6109 -12 316 303 76 0 chr9 106673310 106673429 -11189198 + L2 LINE L2 3186 3313 0 192 266 105 73 chr9 106673460 106673554 -11189073 + MIR SINE MIR 109 209 -53 1881 161 0 3 chr9 106673554 106673865 -11188762 + AluSx SINE Alu 1 310 -2 192 266 105 73 chr9 106673865 106673894 -11188733 + MIR SINE MIR 209 236 -26 612 303 102 68 chr9 106674135 106674468 -11188159 + L1MC4a LINE L1 6063 6420 -1388 1741 170 32 66 chr9 106674468 106674679 -11187948 + MLT1A1 LTR MaLR 2 196 -169 1867 151 0 19 chr9 106674679 106674996 -11187631 - AluSx SINE Alu -1 311 1 1741 170 32 66 chr9 106674996 106675161 -11187466 + MLT1A1 LTR MaLR 196 365 0 612 303 102 68 chr9 106675161 106675339 -11187288 + L1MC4a LINE L1 6420 6591 -1217 2604 144 66 75 chr9 106675339 106675976 -11186651 - L1MC2 LINE L1 0 6344 5714 1221 270 30 8 chr9 106676003 106676366 -11186261 + L1MC4 LINE L1 6698 7068 -974 1663 143 38 0 chr9 106676394 106676660 -11185967 - AluJb SINE Alu -36 276 1 21 36 0 0 chr9 106676672 106676700 -11185927 + AT_rich Low_complexity Low_complexity 1 28 0 431 226 50 55 chr9 106676708 106676889 -11185738 + L1MC5 LINE L1 6989 7168 -793 974 166 6 0 chr9 106676889 106677052 -11185575 + FRAM SINE Alu 1 158 -18 1691 185 127 91 chr9 106677054 106677793 -11184834 + L1MC5 LINE L1 7166 7931 -30 566 171 0 0 chr9 106678251 106678360 -11184267 + FLAM_A SINE Alu 33 141 0 2214 107 0 0 chr9 106678360 106678658 -11183969 + AluSx SINE Alu 1 298 -14 1186 253 104 32 chr9 106678971 106679441 -11183186 + MLT1H LTR MaLR 43 546 -3 198 316 184 11 chr9 106679521 106679695 -11182932 + MIR SINE MIR 5 208 -54 225 329 29 0 chr9 106679866 106679936 -11182691 + L2 LINE L2 3240 3311 -2 620 184 7 41 chr9 106680052 106680199 -11182428 - MER5B DNA MER1_type -36 142 1 301 253 93 7 chr9 106680565 106680717 -11181910 - MIR SINE MIR -59 203 36 206 349 45 52 chr9 106680945 106681214 -11181413 + L2 LINE L2 2709 2975 -339 321 89 0 0 chr9 106681938 106681983 -11180644 + (A)n Simple_repeat Simple_repeat 1 45 0 1548 188 64 0 chr9 106682184 106682466 -11180161 - AluJo SINE Alu -12 300 1 477 267 42 0 chr9 106682764 106682884 -11179743 - FLAM_A SINE Alu -8 125 1 1905 141 3 0 chr9 106682928 106683225 -11179402 + AluSx SINE Alu 1 298 -14 718 274 8 46 chr9 106683682 106683945 -11178682 - L2 LINE L2 -201 3071 2819 283 319 119 41 chr9 106684702 106684997 -11177630 + L2 LINE L2 2643 2960 -354 2095 118 0 0 chr9 106685078 106685398 -11177229 + AluSx SINE Alu 1 320 0 223 229 0 0 chr9 106685398 106685446 -11177181 - MIR SINE MIR -98 164 117 596 277 121 9 chr9 106685612 106685836 -11176791 + MIR SINE MIR 2 250 -12 470 240 60 40 chr9 106686093 106686243 -11176384 + MIR SINE MIR 20 172 -90 280 216 81 72 chr9 106686441 106686552 -11176075 - Charlie8 DNA MER1_type -2208 209 98 758 197 197 17 chr9 106686562 106686795 -11175832 + L1ME3A LINE L1 5895 6169 -1 2081 131 0 6 chr9 106687184 106687496 -11175131 + AluSx SINE Alu 1 310 -2 1864 113 0 0 chr9 106688567 106688815 -11173812 - AluSg SINE Alu -28 282 35 253 256 122 77 chr9 106688829 106689060 -11173567 - MIR SINE MIR -5 257 1 558 0 0 0 chr9 106690747 106690809 -11171818 + (TG)n Simple_repeat Simple_repeat 2 63 0 228 35 0 0 chr9 106691741 106691770 -11170857 + (CA)n Simple_repeat Simple_repeat 1 29 0 24 53 0 0 chr9 106692183 106692221 -11170406 + GC_rich Low_complexity Low_complexity 1 38 0 60 64 0 0 chr9 106693394 106693503 -11169124 + GC_rich Low_complexity Low_complexity 1 109 0 23 33 0 0 chr9 106694301 106694331 -11168296 + GC_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr9 106694718 106694740 -11167887 + GC_rich Low_complexity Low_complexity 1 22 0 234 0 0 0 chr9 106746594 106746620 -11116007 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 2418 81 7 0 chr9 106746633 106746930 -11115697 - AluY SINE Alu -12 299 1 401 272 140 7 chr9 106746994 106747130 -11115497 + L1M4 LINE L1 3004 3157 -2989 837 234 78 0 chr9 106747134 106747339 -11115288 + MIR SINE MIR 41 261 -1 780 188 0 0 chr9 106747464 106747597 -11115030 - FLAM_C SINE Alu 0 133 1 735 283 131 58 chr9 106747645 106748112 -11114515 + L1M4 LINE L1 3334 3834 -2312 674 254 65 39 chr9 106748115 106748347 -11114280 + MIR SINE MIR 21 258 -4 2029 143 10 0 chr9 106748374 106748495 -11114132 + AluSx SINE Alu 1 119 -193 207 0 0 0 chr9 106748495 106748518 -11114109 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2029 143 10 0 chr9 106748518 106748690 -11113937 + AluSx SINE Alu 119 297 -15 2481 88 0 16 chr9 106748692 106749009 -11113618 + AluSx SINE Alu 1 312 0 30 0 0 0 chr9 106749010 106749040 -11113587 + AT_rich Low_complexity Low_complexity 1 30 0 2126 113 7 7 chr9 106749579 106749870 -11112757 + AluSx SINE Alu 1 291 -21 410 252 14 143 chr9 106749873 106750083 -11112544 + L1M4 LINE L1 3865 4047 -2099 309 325 26 0 chr9 106750171 106750325 -11112302 - MER103 DNA DNA -7 159 2 512 276 163 56 chr9 106750431 106750912 -11111715 + L1M4 LINE L1 4084 4664 -1482 2616 55 0 3 chr9 106750912 106751222 -11111405 - AluY SINE Alu -2 309 1 512 276 163 56 chr9 106751222 106751412 -11111215 + L1M4 LINE L1 4664 4832 -1314 289 303 9 18 chr9 106751440 106751549 -11111078 - LTR67 LTR ERVL -19 538 431 538 358 34 10 chr9 106751822 106752115 -11110512 + L2 LINE L2 2330 2629 -685 526 212 16 7 chr9 106752155 106752308 -11110319 - L1ME1 LINE L1 -167 6017 5863 198 410 0 0 chr9 106752317 106752412 -11110215 + L2 LINE L2 3134 3228 -44 25 0 0 0 chr9 106752447 106752472 -11110155 + AT_rich Low_complexity Low_complexity 1 25 0 975 161 92 56 chr9 106752596 106752786 -11109841 - MLT1A2 LTR MaLR -8 366 163 2418 101 0 0 chr9 106752786 106753094 -11109533 - AluSx SINE Alu -4 308 1 975 161 92 56 chr9 106753094 106753152 -11109475 - MLT1A2 LTR MaLR -211 163 109 1653 101 4 18 chr9 106753152 106753379 -11109248 + AluSg/x SINE Alu 87 310 -2 188 132 0 26 chr9 106753382 106753420 -11109207 + (GAAA)n Simple_repeat Simple_repeat 2 38 0 2276 83 0 14 chr9 106753516 106753840 -11108787 - AluSg SINE Alu 0 310 1 223 288 175 0 chr9 106754213 106754373 -11108254 + MIR SINE MIR 60 247 -15 363 337 10 23 chr9 106754824 106755028 -11107599 - L1M4 LINE L1 -379 5799 5598 2200 113 0 19 chr9 106755142 106755451 -11107176 - AluSg SINE Alu -7 303 1 2377 88 7 3 chr9 106755455 106755762 -11106865 - AluY SINE Alu -3 308 1 1194 158 8 54 chr9 106756001 106756241 -11106386 + AluJb SINE Alu 84 312 0 221 272 25 43 chr9 106756467 106756632 -11105995 + MIR SINE MIR 9 260 -2 2253 97 3 0 chr9 106756742 106757060 -11105567 + AluSx SINE Alu 1 312 0 2267 98 30 0 chr9 106757062 106757359 -11105268 + AluSg SINE Alu 3 308 -2 213 71 0 95 chr9 106758081 106758123 -11104504 + (GGGGA)n Simple_repeat Simple_repeat 2 39 0 1733 105 0 0 chr9 106758585 106758813 -11103814 + AluSg/x SINE Alu 83 310 0 761 157 0 0 chr9 106759207 106759322 -11103305 + FLAM_C SINE Alu 1 115 -18 545 0 0 15 chr9 106759323 106759389 -11103238 + (TAGA)n Simple_repeat Simple_repeat 1 65 0 881 229 28 5 chr9 106759652 106759866 -11102761 - MER20 DNA MER1_type 0 219 1 423 315 68 24 chr9 106759908 106760159 -11102468 + Tigger8 DNA MER2_type 69 330 -336 874 295 51 0 chr9 106763377 106763614 -11099013 + MIR SINE MIR 6 254 -8 548 246 38 60 chr9 106765014 106765258 -11097369 + MIR SINE MIR 12 256 -6 201 268 71 0 chr9 106765323 106765379 -11097248 + MIR SINE MIR 85 144 -118 402 239 68 26 chr9 106765947 106766064 -11096563 + MIR SINE MIR 20 141 -67 2179 99 13 3 chr9 106766089 106766392 -11096235 + AluSx SINE Alu 6 311 -1 737 233 52 7 chr9 106766395 106766599 -11096028 + MIR SINE MIR 34 255 -7 205 271 51 0 chr9 106767417 106767476 -11095151 + MIR SINE MIR 84 145 -63 2145 95 7 3 chr9 106767533 106767828 -11094799 + AluSg SINE Alu 1 296 -14 340 350 29 7 chr9 106767852 106767989 -11094638 + MIR SINE MIR 86 225 -37 305 282 60 17 chr9 106768961 106769078 -11093549 - MIR SINE MIR -35 227 106 230 244 33 33 chr9 106769404 106769494 -11093133 + GA-rich Low_complexity Low_complexity 5 94 0 423 318 39 34 chr9 106770172 106770405 -11092222 - L1MC4a LINE L1 -1910 5898 5665 195 313 45 80 chr9 106770511 106770623 -11092004 - L2 LINE L2 -1034 2280 2173 233 221 15 59 chr9 106770764 106770832 -11091795 + L2 LINE L2 3208 3272 0 409 298 43 14 chr9 106771210 106771351 -11091276 - MIR SINE MIR -40 222 78 2185 99 0 0 chr9 106771383 106771693 -11090934 - AluSx SINE Alu 0 310 1 214 255 0 0 chr9 106772380 106772431 -11090196 + (TG)n Simple_repeat Simple_repeat 2 52 0 920 195 105 0 chr9 106773647 106773837 -11088790 + MER6B DNA MER2_type 1 210 0 192 264 46 46 chr9 106775079 106775166 -11087461 + MIR SINE MIR 31 117 -145 210 37 0 0 chr9 106775394 106775421 -11087206 + (TTTTA)n Simple_repeat Simple_repeat 3 29 0 307 305 199 0 chr9 106775998 106776149 -11086478 + MIR SINE MIR 63 243 -19 306 295 81 50 chr9 106777656 106777914 -11084713 + L2 LINE L2 2539 2804 -510 2489 68 0 6 chr9 106778386 106778697 -11083930 + AluSc SINE Alu 1 309 0 2712 7 0 0 chr9 106778709 106779008 -11083619 + AluY SINE Alu 1 299 -12 358 247 24 12 chr9 106779314 106779399 -11083228 + L2 LINE L2 3227 3312 -1 441 293 48 2 chr9 106779565 106779765 -11082862 + MIR3 SINE MIR 47 254 -8 286 307 268 21 chr9 106780805 106780971 -11081656 + L3 LINE CR1 963 1087 -490 2313 93 7 3 chr9 106780971 106781281 -11081346 + AluSx SINE Alu 2 312 0 286 307 268 21 chr9 106781281 106781394 -11081233 + L3 LINE CR1 1087 1311 -266 560 248 12 6 chr9 106782217 106782544 -11080083 + (TGGA)n Simple_repeat Simple_repeat 1 328 0 283 291 105 26 chr9 106783228 106783448 -11079179 + MIR3 SINE MIR 4 255 -7 219 276 0 0 chr9 106783604 106783662 -11078965 + L2 LINE L2 3215 3272 0 254 188 0 0 chr9 106783737 106783785 -11078842 + MIR SINE MIR 188 235 -27 652 255 157 74 chr9 106784165 106784563 -11078064 + L2 LINE L2 2244 2608 -705 2258 113 0 0 chr9 106784563 106784872 -11077755 + AluSx SINE Alu 4 312 0 652 255 157 74 chr9 106784872 106785036 -11077591 + L2 LINE L2 2608 2757 -556 844 158 0 0 chr9 106785036 106785169 -11077458 - FLAM_C SINE Alu 0 133 1 652 255 157 74 chr9 106785169 106785554 -11077073 + L2 LINE L2 2757 3300 -13 2254 104 0 0 chr9 106785556 106785865 -11076762 + AluSg SINE Alu 1 309 -1 47 19 0 0 chr9 106786213 106786267 -11076360 + GC_rich Low_complexity Low_complexity 1 54 0 478 299 51 0 chr9 106786684 106786841 -11075786 - MIR SINE MIR -92 170 6 285 354 55 18 chr9 106787327 106787491 -11075136 - MIR SINE MIR -11 251 82 404 284 53 62 chr9 106788073 106788281 -11074346 - L2 LINE L2 -219 3053 2848 455 257 40 46 chr9 106788748 106788900 -11073727 - MIR SINE MIR -88 174 24 1861 53 0 4 chr9 106789015 106789242 -11073385 + AluY SINE Alu 77 302 -9 468 285 95 0 chr9 106789689 106789847 -11072780 + MIR SINE MIR 80 252 -10 481 279 49 77 chr9 106790070 106790159 -11072468 - MIR SINE MIR -20 242 159 2287 98 0 3 chr9 106790159 106790465 -11072162 - AluSx SINE Alu -1 311 7 481 279 49 77 chr9 106790465 106790558 -11072069 - MIR SINE MIR -103 159 65 425 315 67 6 chr9 106790579 106790744 -11071883 - MIR SINE MIR -54 208 34 413 321 14 36 chr9 106791586 106791726 -11070901 + MER91A DNA MER1_type 2 138 -58 250 211 133 11 chr9 106791902 106791992 -11070635 - MIR SINE MIR -44 218 118 * 400 301 0 27 chr9 106791990 106792136 -11070491 - L2 LINE L2 -165 3107 2966 762 298 5 0 chr9 106792730 106792921 -11069706 + MIR SINE MIR 65 256 -6 490 318 51 42 chr9 106793063 106793396 -11069231 - L2 LINE L2 -468 2846 2511 225 254 0 28 chr9 106794371 106794442 -11068185 + (CA)n Simple_repeat Simple_repeat 1 69 0 21 0 0 0 chr9 106796269 106796290 -11066337 + GC_rich Low_complexity Low_complexity 1 21 0 272 173 24 47 chr9 106797080 106797207 -11065420 + (CTGGGG)n Simple_repeat Simple_repeat 4 127 0 450 300 126 22 chr9 106797412 106797635 -11064992 - MIR SINE MIR 0 262 17 189 257 133 0 chr9 106798209 106798314 -11064313 + L2 LINE L2 2379 2497 -817 204 335 125 23 chr9 106798549 106798853 -11063774 + L2 LINE L2 2820 3154 -118 214 264 190 33 chr9 106800633 106800754 -11061873 - L3 LINE CR1 -9 1568 1429 450 323 205 41 chr9 106800849 106801101 -11061526 - L3 LINE CR1 -467 1110 901 2254 67 3 0 chr9 106801101 106801438 -11061189 - AluSp SINE Alu 0 338 1 450 323 205 41 chr9 106801438 106801897 -11060730 - L3 LINE CR1 -676 901 281 453 248 74 22 chr9 106802415 106802563 -11060064 - MIR3 SINE MIR -25 183 28 182 304 101 14 chr9 106802598 106802667 -11059960 - L3 LINE CR1 -1222 355 281 181 237 0 0 chr9 106802722 106802760 -11059867 - MIR3 SINE MIR -8 200 163 289 277 0 0 chr9 106802982 106803047 -11059580 - MIR SINE MIR -63 145 81 260 310 121 0 chr9 106803271 106803387 -11059240 - MIR3 SINE MIR -65 143 14 208 255 0 0 chr9 106803827 106803878 -11058749 + (CA)n Simple_repeat Simple_repeat 1 51 0 387 320 187 24 chr9 106804573 106804904 -11057723 - L2 LINE L2 0 3272 2888 280 250 116 62 chr9 106804941 106805053 -11057574 - L2 LINE L2 -625 2689 2572 288 316 101 19 chr9 106806021 106806179 -11056448 - MIR SINE MIR -85 177 7 1418 189 19 15 chr9 106806647 106806912 -11055715 - AluJo SINE Alu -46 266 1 222 263 211 0 chr9 106806982 106807058 -11055569 - MIR SINE MIR -75 187 96 234 296 168 10 chr9 106807954 106808150 -11054477 - L2 LINE L2 -209 3063 2837 400 250 20 0 chr9 106808912 106809012 -11053615 - MIR SINE MIR -115 147 46 212 133 0 83 chr9 106809467 106809527 -11053100 + (CCCCCA)n Simple_repeat Simple_repeat 3 57 0 254 190 114 0 chr9 106810108 106810187 -11052440 + MLT1K LTR MaLR 497 584 -4 440 283 145 31 chr9 106810972 106811008 -11051619 - MIR SINE MIR -18 244 213 2093 116 6 6 chr9 106811008 106811319 -11051308 - AluSx SINE Alu -1 311 1 440 283 145 31 chr9 106811319 106811441 -11051186 - MIR SINE MIR -49 213 68 1829 162 0 7 chr9 106812019 106812316 -11050311 + AluSx SINE Alu 1 295 -17 2522 109 11 16 chr9 106812335 106812701 -11049926 + THE1B LTR MaLR 1 364 0 573 88 0 0 chr9 106813037 106813117 -11049510 + (TA)n Simple_repeat Simple_repeat 1 80 0 500 298 56 56 chr9 106813126 106813378 -11049249 - L1M4 LINE L1 -3663 2483 2232 1119 185 4 53 chr9 106813637 106813660 -11048967 - AluJo SINE Alu -6 306 283 190 0 0 0 chr9 106813660 106813681 -11048946 + (TTA)n Simple_repeat Simple_repeat 2 180 0 1119 185 4 53 chr9 106813681 106813900 -11048727 - AluJo SINE Alu -29 283 76 806 147 0 0 chr9 106813927 106814043 -11048584 - FLAM_C SINE Alu -17 116 1 303 234 35 85 chr9 106814065 106814206 -11048421 - L1ME3 LINE L1 -192 5970 5837 499 125 0 8 chr9 106814254 106814344 -11048283 - AluS SINE Alu -14 298 226 1423 261 73 101 chr9 106814347 106814830 -11047797 - L1MDa LINE L1 -1155 4974 4479 2102 103 3 0 chr9 106814830 106815120 -11047507 - AluSq SINE Alu -12 301 11 1423 261 73 101 chr9 106815120 106815543 -11047084 - L1MDa LINE L1 -1650 4479 4046 2350 71 3 7 chr9 106815543 106815853 -11046774 - AluY SINE Alu -2 309 1 1423 261 73 101 chr9 106815853 106816389 -11046238 - L1MDa LINE L1 -2083 4046 3497 2232 64 42 0 chr9 106816389 106816672 -11045955 + AluY SINE Alu 1 295 -16 1423 261 73 101 chr9 106816672 106816724 -11045903 - L1MDa LINE L1 -2632 3497 3445 189 0 0 0 chr9 106816724 106816745 -11045882 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1423 261 73 101 chr9 106816745 106816767 -11045860 - L1MDa LINE L1 -2684 3445 3424 1873 148 0 0 chr9 106816767 106817050 -11045577 - AluSx SINE Alu -29 283 1 1423 261 73 101 chr9 106817050 106817250 -11045377 - L1MDa LINE L1 -2705 3424 3306 1545 150 79 0 chr9 106817275 106817542 -11045085 + AluSq SINE Alu 9 296 -17 340 304 30 22 chr9 106817553 106817688 -11044939 - L1MDa LINE L1 -3274 2855 2720 935 90 0 0 chr9 106817712 106817834 -11044793 - AluSg SINE Alu -188 122 1 636 315 57 24 chr9 106817847 106818463 -11044164 - L1MDa LINE L1 -3401 2728 2093 1405 184 69 21 chr9 106818544 106818832 -11043795 + AluJo SINE Alu 1 302 0 991 114 6 6 chr9 106818838 106819005 -11043622 + (GGAA)n Simple_repeat Simple_repeat 3 169 0 371 305 138 18 chr9 106819346 106819552 -11043075 - L1MDa LINE L1 -4440 1689 1379 1756 153 28 0 chr9 106819557 106819844 -11042783 + AluJb SINE Alu 1 295 -17 285 321 4 80 chr9 106819844 106819873 -11042754 - HAL1 LINE L1 -898 1609 1579 3404 198 17 63 chr9 106819873 106820889 -11041738 + LTR5 LTR ERVK 1 969 0 285 321 4 80 chr9 106820889 106820982 -11041645 - HAL1 LINE L1 -928 1579 1480 1644 127 0 8 chr9 106820982 106821269 -11041358 - AluSx SINE Alu 0 327 43 285 321 4 80 chr9 106821269 106821406 -11041221 - HAL1 LINE L1 -1027 1480 1368 * 1378 237 37 62 chr9 106821392 106821609 -11041018 - L1MDa LINE L1 -4902 1217 996 551 100 0 0 chr9 106821609 106821689 -11040938 + MADE1 DNA Mariner 1 80 0 1378 237 37 62 chr9 106821689 106821846 -11040781 - L1MDa LINE L1 -5123 996 837 315 0 0 0 chr9 106821846 106821881 -11040746 + (TG)n Simple_repeat Simple_repeat 1 35 0 1378 237 37 62 chr9 106821881 106822179 -11040448 - L1MDa LINE L1 -5282 837 561 231 246 29 0 chr9 106822374 106822443 -11040184 - L1MDa LINE L1 -5968 151 81 1941 122 40 0 chr9 106822458 106822633 -11039994 - AluSq SINE Alu -5 308 115 224 89 0 22 chr9 106822633 106822678 -11039949 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1941 122 40 0 chr9 106822678 106822798 -11039829 - AluSq SINE Alu -198 115 1 267 295 26 0 chr9 106822892 106822970 -11039657 - MIR SINE MIR -103 159 80 247 288 134 81 chr9 106823535 106823797 -11038830 - L2 LINE L2 -5 3267 2976 1948 125 0 58 chr9 106823797 106824124 -11038503 + AluSg SINE Alu 1 308 -2 247 288 134 81 chr9 106824124 106824257 -11038370 - L2 LINE L2 -296 2976 2851 1705 137 39 11 chr9 106824477 106824761 -11037866 + AluSx SINE Alu 1 292 -20 214 281 94 42 chr9 106825356 106825452 -11037175 + MIR SINE MIR 19 119 -143 29 0 0 0 chr9 106826304 106826333 -11036294 + GC_rich Low_complexity Low_complexity 1 29 0 200 170 21 21 chr9 106827444 106827491 -11035136 + (TTCA)n Simple_repeat Simple_repeat 4 50 0 298 274 9 57 chr9 106827826 106827932 -11034695 + MIR SINE MIR 5 105 -157 1269 143 5 27 chr9 106828394 106828617 -11034010 + AluJo SINE Alu 88 305 -7 2222 93 10 6 chr9 106828888 106829200 -11033427 - AluSp SINE Alu 0 313 1 1153 299 40 19 chr9 106829355 106830018 -11032609 - L1ME3A LINE L1 -289 5881 5204 817 140 39 39 chr9 106830053 106830231 -11032396 - L1MA7 LINE L1 0 6291 6114 592 174 8 8 chr9 106830377 106830509 -11032118 + CT-rich Low_complexity Low_complexity 1 132 0 678 288 31 87 chr9 106830560 106830574 -11032053 - L1ME3A LINE L1 -1087 5059 5046 2081 129 0 0 chr9 106830574 106830883 -11031744 - AluSx SINE Alu -3 309 1 678 288 31 87 chr9 106830883 106831223 -11031404 - L1ME3A LINE L1 -1100 5046 4689 905 280 63 63 chr9 106831223 106831588 -11031039 + MLT1J1 LTR MaLR 1 368 -78 2196 105 7 0 chr9 106831588 106831893 -11030734 - AluSc SINE Alu -2 307 1 905 280 63 63 chr9 106831893 106831973 -11030654 + MLT1J1 LTR MaLR 367 446 0 678 288 31 87 chr9 106831973 106832512 -11030115 - L1ME3A LINE L1 -1457 4689 4215 860 260 105 17 chr9 106832519 106832815 -11029812 + L2 LINE L2 2937 3258 -55 576 264 80 28 chr9 106833068 106833432 -11029195 - L1ME3A LINE L1 -2221 3925 3543 1935 158 0 0 chr9 106833459 106833769 -11028858 - AluSx SINE Alu -2 310 1 2250 101 7 0 chr9 106833907 106834215 -11028412 - AluSx SINE Alu -2 310 1 1037 127 0 0 chr9 106834267 106834417 -11028210 + AluSg/x SINE Alu 135 284 -26 288 0 0 0 chr9 106834417 106834449 -11028178 + (CA)n Simple_repeat Simple_repeat 2 33 0 492 320 102 42 chr9 106834525 106835224 -11027403 - L1ME3A LINE L1 -2884 3262 2467 348 280 37 41 chr9 106835277 106835412 -11027215 - L1ME3A LINE L1 -3794 2352 2217 2258 94 0 0 chr9 106835412 106835710 -11026917 - AluSp SINE Alu -15 298 1 348 280 37 41 chr9 106835710 106835792 -11026835 - L1ME3A LINE L1 -3929 2217 2136 22 35 0 0 chr9 106835922 106835951 -11026676 + AT_rich Low_complexity Low_complexity 1 29 0 1359 87 14 19 chr9 106836103 106836310 -11026317 - AluY SINE Alu -12 299 94 364 219 0 0 chr9 106836354 106836427 -11026200 - HsTC2 DNA Tc2 -3 1895 1823 7019 196 42 72 chr9 106836430 106837303 -11025324 + L1M4 LINE L1 1 899 -5745 1914 119 7 0 chr9 106837303 106837615 -11025012 + AluSc SINE Alu 1 314 0 7019 196 42 72 chr9 106837615 106838134 -11024493 + L1M4 LINE L1 899 1432 -5212 2001 123 0 0 chr9 106838134 106838419 -11024208 + AluSx SINE Alu 13 297 -15 7019 196 42 72 chr9 106838419 106838878 -11023749 + L1M4 LINE L1 1432 1903 -4741 1622 189 0 0 chr9 106838878 106839173 -11023454 + AluJo SINE Alu 7 301 0 7019 196 42 72 chr9 106839173 106840219 -11022408 + L1M4 LINE L1 1903 2870 -3774 456 19 0 0 chr9 106840231 106840284 -11022343 + (TA)n Simple_repeat Simple_repeat 2 54 0 3889 218 53 6 chr9 106840285 106841389 -11021238 + L1M4 LINE L1 3270 4425 -2219 645 167 141 50 chr9 106841389 106841587 -11021040 - HsTC2 DNA Tc2 -67 1831 1616 7328 248 46 24 chr9 106841590 106842557 -11020070 - ERVL-E LTR ERVL -314 5450 4506 2677 130 14 27 chr9 106842557 106842995 -11019632 + MSTB1 LTR MaLR 1 432 0 7328 248 46 24 chr9 106842995 106843958 -11018669 - ERVL-E LTR ERVL -1258 4506 3477 626 298 119 5 chr9 106843987 106844205 -11018422 - ERVL-E LTR ERVL -3630 2134 1892 1654 286 109 92 chr9 106844251 106844612 -11018015 - ERVL-E LTR ERVL -3926 1728 1375 1614 156 90 7 chr9 106844612 106844900 -11017727 - AluJo SINE Alu 0 312 1 1654 286 109 92 chr9 106844900 106845946 -11016681 - ERVL-E LTR ERVL -4279 1375 297 1021 76 0 8 chr9 106845950 106846081 -11016546 + AluY SINE Alu 5 134 -177 2116 116 0 3 chr9 106846083 106846384 -11016243 + AluSc SINE Alu 3 302 -7 1768 259 122 14 chr9 106846671 106847238 -11015389 - MLT2E LTR ERVL 0 628 1 1608 165 14 28 chr9 106847533 106847824 -11014803 - AluJo SINE Alu -25 287 1 879 181 176 23 chr9 106848391 106848607 -11014020 + MER88 LTR ERVL 216 464 0 2040 113 3 0 chr9 106848607 106848899 -11013728 + AluSx SINE Alu 1 293 -19 253 157 0 57 chr9 106849006 106849076 -11013551 + CT-rich Low_complexity Low_complexity 4 69 0 339 338 5 18 chr9 106849654 106849967 -11012660 + CT-rich Low_complexity Low_complexity 1 316 -403 311 268 14 29 chr9 106849819 106849957 -11012670 + (TCTCTG)n Simple_repeat Simple_repeat 2 137 0 * 1589 148 22 66 chr9 106849967 106850154 -11012473 - AluSx SINE Alu -9 303 134 180 0 0 0 chr9 106850154 106850174 -11012453 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1589 148 22 66 chr9 106850174 106850303 -11012324 - AluSx SINE Alu -178 134 1 339 338 5 18 chr9 106850303 106850382 -11012245 + CT-rich Low_complexity Low_complexity 316 719 0 253 269 0 15 chr9 106850397 106850464 -11012163 + (TA)n Simple_repeat Simple_repeat 2 67 0 2177 109 0 10 chr9 106850640 106850952 -11011675 - AluSc SINE Alu 0 309 1 312 137 0 0 chr9 106851080 106851131 -11011496 + (CA)n Simple_repeat Simple_repeat 2 52 0 346 295 16 26 chr9 106851280 106851298 -11011329 + CT-rich Low_complexity Low_complexity 1 18 -491 1548 165 0 8 chr9 106851298 106851559 -11011068 - AluSx SINE Alu -11 301 43 346 295 16 26 chr9 106851559 106851795 -11010832 + CT-rich Low_complexity Low_complexity 18 509 0 333 68 0 0 chr9 106851814 106851858 -11010769 + (TCCCC)n Simple_repeat Simple_repeat 5 48 0 426 261 68 31 chr9 106851994 106852155 -11010472 - HAL1 LINE L1 -882 1625 1459 313 250 42 17 chr9 106852210 106852330 -11010297 - L1MEd LINE L1 -5011 1108 986 1720 176 3 3 chr9 106852396 106852702 -11009925 - AluJo SINE Alu -6 306 1 1836 118 0 15 chr9 106852794 106852955 -11009672 - AluSx SINE Alu -18 294 137 2353 73 0 10 chr9 106852955 106853268 -11009359 - AluY SINE Alu -1 310 1 1836 118 0 15 chr9 106853268 106853376 -11009251 - AluSx SINE Alu -175 137 29 21 36 0 0 chr9 106853605 106853633 -11008994 + AT_rich Low_complexity Low_complexity 1 28 0 204 293 0 0 chr9 106853986 106854044 -11008583 + CT-rich Low_complexity Low_complexity 1 58 0 2312 77 0 3 chr9 106854085 106854383 -11008244 + AluY SINE Alu 1 297 -14 232 174 43 0 chr9 106854413 106854459 -11008168 - MLT1K LTR MaLR -32 556 509 493 310 140 30 chr9 106854802 106855202 -11007425 + LTR16A LTR ERVL 4 447 -3 2243 87 0 16 chr9 106855356 106855666 -11006961 - AluSg1 SINE Alu -4 305 1 481 148 0 25 chr9 106855685 106855766 -11006861 - L1M3 LINE L1 -662 5521 5443 604 167 98 0 chr9 106855774 106855906 -11006721 - L1MA4 LINE L1 -4 6296 6152 289 116 0 0 chr9 106855900 106855943 -11006684 + L1M2 LINE L1 5726 5768 -532 * 772 309 66 25 chr9 106856008 106856325 -11006302 + LTR16A LTR ERVL 16 345 -105 188 353 0 0 chr9 106856367 106856418 -11006209 + MER5A DNA MER1_type 139 189 0 230 295 74 25 chr9 106856758 106856927 -11005700 + L2 LINE L2 3011 3255 -17 289 232 0 0 chr9 106857157 106857213 -11005414 - MER96 DNA MER1_type? -86 89 34 2023 104 44 7 chr9 106857250 106857547 -11005080 + AluSx SINE Alu 1 308 -4 1744 50 4 95 chr9 106857549 106857842 -11004785 + AluSp SINE Alu 48 316 0 419 225 99 14 chr9 106857878 106858020 -11004607 - MIR SINE MIR -27 235 82 225 232 14 14 chr9 106858084 106858153 -11004474 + L2 LINE L2 2880 2948 -324 356 314 28 0 chr9 106858194 106858374 -11004253 - MIR3 SINE MIR -60 148 2 2127 104 6 28 chr9 106859366 106859684 -11002943 + AluSx SINE Alu 1 311 -1 1512 229 137 31 chr9 106860398 106860919 -11001708 - MLT1F1 LTR MaLR 0 567 7 2120 84 3 44 chr9 106860932 106861117 -11001510 - AluSc SINE Alu -2 307 139 2051 131 0 3 chr9 106861117 106861423 -11001204 - AluSp SINE Alu -6 307 3 2120 84 3 44 chr9 106861423 106861557 -11001070 - AluSc SINE Alu -170 139 1 1665 149 0 40 chr9 106861558 106861860 -11000767 - AluJo SINE Alu -16 296 7 270 266 31 0 chr9 106862178 106862242 -11000385 + MLT1J LTR MaLR 110 175 -336 1699 95 22 0 chr9 106862458 106862690 -10999937 - AluSq SINE Alu -76 237 1 261 221 77 29 chr9 106862743 106862847 -10999780 + MLT1J LTR MaLR 399 507 -4 888 293 31 7 chr9 106862947 106863241 -10999386 + L1ME4a LINE L1 5477 5777 -344 1358 171 45 51 chr9 106863241 106863321 -10999306 + MER33 DNA MER1_type 1 69 -2516 1506 173 37 30 chr9 106863321 106863616 -10999011 + AluJo SINE Alu 1 297 -15 1358 171 45 51 chr9 106863616 106863869 -10998758 + MER33 DNA MER1_type 69 321 -3 2217 92 0 0 chr9 106863919 106864211 -10998416 + AluSg SINE Alu 1 292 -18 315 301 53 58 chr9 106864242 106864358 -10998269 + L1ME4a LINE L1 5845 5961 -160 1884 163 3 0 chr9 106864358 106864655 -10997972 - AluJb SINE Alu -13 299 5 315 301 53 58 chr9 106864655 106864764 -10997863 + L1ME4a LINE L1 5961 6069 -52 21 0 0 0 chr9 106865339 106865360 -10997267 + AT_rich Low_complexity Low_complexity 1 21 0 2622 40 0 3 chr9 106865370 106865672 -10996955 - AluY SINE Alu -10 301 1 2286 113 0 0 chr9 106866041 106866343 -10996284 - AluSx SINE Alu -10 302 1 23 54 0 0 chr9 106866418 106866455 -10996172 + AT_rich Low_complexity Low_complexity 1 37 0 21 57 0 0 chr9 106866652 106866687 -10995940 + AT_rich Low_complexity Low_complexity 1 35 0 717 247 185 44 chr9 106866723 106867176 -10995451 - MLT1H1 LTR MaLR -2 553 37 2217 105 3 7 chr9 106867403 106867707 -10994920 - AluSx SINE Alu -9 303 1 639 283 5 13 chr9 106867779 106867962 -10994665 - MIR SINE MIR -57 205 28 1553 155 86 11 chr9 106867962 106868240 -10994387 - AluJo SINE Alu -13 299 1 639 283 5 13 chr9 106868240 106868261 -10994366 - MIR SINE MIR -234 28 8 2376 88 3 0 chr9 106868349 106868646 -10993981 + AluSp SINE Alu 1 298 -15 521 236 31 32 chr9 106868898 106869213 -10993414 + L1M4 LINE L1 5263 5583 -595 2164 104 7 3 chr9 106869213 106869511 -10993116 + AluSx SINE Alu 1 299 -13 2368 80 0 0 chr9 106869513 106869800 -10992827 + AluSx SINE Alu 1 287 -25 251 313 89 58 chr9 106869964 106870223 -10992404 + L1MDa LINE L1 65 331 -6209 422 148 0 0 chr9 106870568 106870629 -10991998 + AluSx SINE Alu 2 62 -256 2006 70 52 19 chr9 106870636 106870940 -10991687 - AluY SINE Alu 0 313 1 1697 145 0 0 chr9 106870941 106871182 -10991445 + AluSx SINE Alu 52 292 -20 2811 219 37 24 chr9 106871228 106871438 -10991189 + L1M4 LINE L1 2208 2414 -3732 2175 130 0 3 chr9 106871438 106871738 -10990889 + AluSx SINE Alu 1 299 -13 2811 219 37 24 chr9 106871738 106872234 -10990393 + L1M4 LINE L1 2414 2927 -3219 2089 111 7 20 chr9 106872234 106872532 -10990095 + AluSx SINE Alu 1 294 -18 2811 219 37 24 chr9 106872532 106872581 -10990046 + L1M4 LINE L1 2927 2974 -3172 861 168 43 38 chr9 106872581 106872766 -10989861 + L1MB1 LINE L1 5966 6151 -17 2489 59 10 0 chr9 106872793 106873083 -10989544 + AluY SINE Alu 1 293 -18 651 194 44 87 chr9 106873129 106873228 -10989399 + L1M4 LINE L1 2963 3065 -3081 1669 167 18 7 chr9 106873228 106873510 -10989117 + AluJb SINE Alu 13 297 -15 651 194 44 87 chr9 106873510 106873662 -10988965 + L1M4 LINE L1 3065 3203 -2943 2210 92 0 14 chr9 106873662 106873946 -10988681 + AluSg1 SINE Alu 1 280 -29 225 0 0 0 chr9 106873946 106873971 -10988656 + (TTAA)n Simple_repeat Simple_repeat 3 27 0 2163 80 0 4 chr9 106874161 106874437 -10988190 - AluY SINE Alu -10 301 27 238 309 53 0 chr9 106874754 106874848 -10987779 - MLT1H LTR MaLR -428 121 23 2162 100 19 26 chr9 106874859 106875170 -10987457 - AluSq SINE Alu -4 309 1 580 279 33 25 chr9 106875614 106875854 -10986773 + L1M4 LINE L1 4739 4980 -1166 578 319 43 0 chr9 106875970 106876180 -10986447 - MIR SINE MIR -15 247 29 2661 75 26 0 chr9 106876197 106876543 -10986084 + THE1A LTR MaLR 1 355 0 225 0 0 0 chr9 106877016 106877041 -10985586 + (A)n Simple_repeat Simple_repeat 1 25 0 2396 61 0 0 chr9 106877041 106877320 -10985307 + AluY SINE Alu 1 279 -32 519 17 0 0 chr9 106877322 106877382 -10985245 + (GGAA)n Simple_repeat Simple_repeat 3 62 0 2337 109 0 0 chr9 106877555 106877866 -10984761 - AluSx SINE Alu -1 311 1 433 323 68 35 chr9 106877938 106878410 -10984217 + L2 LINE L2 2213 2748 -566 2630 196 39 10 chr9 106878410 106879047 -10983580 + L1ME1 LINE L1 4774 5435 -739 772 147 0 0 chr9 106879066 106879182 -10983445 + FLAM_C SINE Alu 11 126 -17 2576 219 98 25 chr9 106879193 106879901 -10982726 + L1ME1 LINE L1 5407 6165 -1 430 253 149 11 chr9 106880088 106880262 -10982365 - MLT2F LTR ERVL -462 201 4 232 293 52 35 chr9 106880441 106880557 -10982070 + MER91B DNA MER1_type 11 128 -62 318 206 0 0 chr9 106880571 106880639 -10981988 + CT-rich Low_complexity Low_complexity 1 68 0 2519 68 7 0 chr9 106880639 106880947 -10981680 - AluY SINE Alu -1 310 1 284 365 9 0 chr9 106881045 106881152 -10981475 + L2 LINE L2 3138 3245 -27 644 271 71 14 chr9 106881275 106881485 -10981142 + MIR SINE MIR 1 222 -40 234 91 0 0 chr9 106881497 106881508 -10981119 + (CATA)n Simple_repeat Simple_repeat 1 44 0 234 91 0 0 chr9 106881508 106881541 -10981086 + (CATA)n Simple_repeat Simple_repeat 2 34 0 180 0 0 0 chr9 106882261 106882281 -10980346 + (T)n Simple_repeat Simple_repeat 1 20 0 2008 104 0 0 chr9 106882281 106882531 -10980096 - AluSx SINE Alu -62 250 1 1145 150 0 0 chr9 106882562 106882729 -10979898 + AluSg/x SINE Alu 135 301 -9 461 231 129 7 chr9 106882745 106882892 -10979735 + Charlie8 DNA MER1_type 115 279 -2138 822 209 16 22 chr9 106882982 106883164 -10979463 - LTR33 LTR ERVL -1 520 340 1787 130 76 4 chr9 106883466 106883742 -10978885 + AluSx SINE Alu 1 296 -16 2181 125 0 0 chr9 106883833 106884129 -10978498 + AluY SINE Alu 1 296 -15 1509 156 56 81 chr9 106884521 106884841 -10977786 + AluJb SINE Alu 1 312 0 626 264 134 80 chr9 106884990 106885467 -10977160 + LTR67 LTR ERVL 41 543 -14 283 252 137 113 chr9 106885570 106885899 -10976728 - MLT1K LTR MaLR 0 588 252 * 348 283 11 110 chr9 106885873 106886064 -10976563 + MLT1H LTR MaLR 378 549 0 2357 95 3 0 chr9 106886343 106886648 -10975979 + AluSx SINE Alu 1 306 -6 1132 61 0 0 chr9 106886832 106886964 -10975663 + AluY SINE Alu 1 132 -179 256 338 0 12 chr9 106887219 106887299 -10975328 + MLT1H-int LTR MaLR 787 865 -506 2339 114 3 0 chr9 106887308 106887614 -10975013 - AluSg SINE Alu -3 307 1 306 274 118 89 chr9 106887854 106888168 -10974459 + MLT1H-int LTR MaLR 1025 1347 -24 515 225 96 60 chr9 106888210 106888508 -10974119 + MLT1H LTR MaLR 29 302 -107 227 273 71 30 chr9 106888518 106888617 -10974010 + MLT1H LTR MaLR 487 589 -6 248 268 37 0 chr9 106888664 106888746 -10973881 - MLT1J LTR MaLR -2 509 425 558 275 65 21 chr9 106888856 106888897 -10973730 - L1MEd LINE L1 -2866 3263 3225 2430 67 0 16 chr9 106888897 106889213 -10973414 - AluY SINE Alu 0 311 1 558 275 65 21 chr9 106889213 106889556 -10973071 - L1MEd LINE L1 -2904 3225 2862 2179 123 7 13 chr9 106889556 106889865 -10972762 - AluSg SINE Alu -3 307 1 455 105 0 13 chr9 106889896 106889972 -10972655 + (TTCC)n Simple_repeat Simple_repeat 2 76 0 332 300 43 40 chr9 106889972 106890225 -10972402 - L1MEd LINE L1 -3241 2888 2635 1417 136 9 175 chr9 106890236 106890671 -10971956 - MLT1A1 LTR MaLR -2 363 1 552 126 0 0 chr9 106890769 106890856 -10971771 + (CA)n Simple_repeat Simple_repeat 2 88 0 2129 133 0 0 chr9 106890868 106891154 -10971473 - AluSq SINE Alu -27 286 1 270 260 13 0 chr9 106891154 106891231 -10971396 - L1MEd LINE L1 -3671 2458 2381 230 277 0 0 chr9 106891291 106891338 -10971289 - MLT1I LTR MaLR -221 188 142 2053 115 11 3 chr9 106891356 106891643 -10970984 + AluSp SINE Alu 1 289 -24 519 274 97 59 chr9 106891694 106891931 -10970696 - MLT1I LTR MaLR -49 360 115 2379 73 3 0 chr9 106892029 106892316 -10970311 - AluY SINE Alu -21 290 3 866 158 32 32 chr9 106892355 106892513 -10970114 - AluJo SINE Alu -8 294 137 1360 155 9 9 chr9 106892514 106892727 -10969900 - AluJo SINE Alu -14 298 86 768 197 0 0 chr9 106892731 106892858 -10969769 - AluJo SINE Alu -171 131 5 1804 146 73 0 chr9 106892942 106893229 -10969398 - AluJb SINE Alu -4 308 1 353 172 0 0 chr9 106893288 106893352 -10969275 - AluSq SINE Alu -118 185 134 2138 123 3 13 chr9 106893352 106893660 -10968967 - AluSx SINE Alu -7 305 1 931 295 112 38 chr9 106893718 106894192 -10968435 - L1MEd LINE L1 -5283 836 328 292 345 12 18 chr9 106894388 106894553 -10968074 - L1MEd LINE L1 -5953 166 3 404 264 78 31 chr9 106894553 106894746 -10967881 - MLT1J LTR MaLR -63 448 247 2281 93 0 0 chr9 106894783 106895094 -10967533 + AluSg SINE Alu 1 311 0 199 344 0 0 chr9 106895671 106895735 -10966892 - L2 LINE L2 -9 3263 3200 212 0 36 0 chr9 106895831 106895859 -10966768 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2022 113 4 0 chr9 106895862 106896137 -10966490 - AluSx SINE Alu -36 276 1 208 250 11 82 chr9 106897023 106897207 -10965420 + (TCTCTG)n Simple_repeat Simple_repeat 3 173 0 1270 137 95 28 chr9 106897726 106898011 -10964616 + L1MB4 LINE L1 5877 6180 0 1023 192 96 32 chr9 106898520 106898836 -10963791 - HsTC2 DNA Tc2 -36 1862 1525 299 233 58 12 chr9 106898855 106898941 -10963686 - HsTC2 DNA Tc2 -1799 99 10 2382 106 0 3 chr9 106898977 106899289 -10963338 - AluSx SINE Alu -1 311 1 21 0 0 0 chr9 106899365 106899386 -10963241 + AT_rich Low_complexity Low_complexity 1 21 0 306 211 22 11 chr9 106899888 106899978 -10962649 + L1MD3 LINE L1 7905 7995 0 249 322 70 0 chr9 106900521 106900636 -10961991 + MIR SINE MIR 32 154 -108 239 162 0 0 chr9 106900995 106901032 -10961595 - L3 LINE CR1 -17 1560 1524 2251 86 3 10 chr9 106901195 106901487 -10961140 - AluSg1 SINE Alu -19 290 1 2008 124 7 0 chr9 106901515 106901845 -10960782 - AluSq SINE Alu 0 332 1 2264 88 3 16 chr9 106901848 106902155 -10960472 - AluSc SINE Alu -6 303 1 2308 98 13 3 chr9 106902291 106902597 -10960030 + AluSx SINE Alu 1 309 -3 459 300 71 0 chr9 106902653 106902823 -10959804 + MIR SINE MIR 49 230 -32 2328 108 0 0 chr9 106902970 106903276 -10959351 - AluSg SINE Alu -4 306 1 4297 187 50 4 chr9 106903286 106904245 -10958382 - L1MB7 LINE L1 0 6682 5672 2178 125 3 0 chr9 106904328 106904632 -10957995 - AluSq SINE Alu -8 305 1 644 258 104 69 chr9 106905818 106905864 -10956763 - L1MEc LINE L1 -4709 1687 1644 2354 82 0 0 chr9 106905864 106906170 -10956457 + AluY SINE Alu 1 306 0 644 258 104 69 chr9 106906170 106906498 -10956129 - L1MEc LINE L1 -4752 1644 1299 246 288 49 0 chr9 106906502 106906665 -10955962 + (TATATG)n Simple_repeat Simple_repeat 3 173 0 * 489 246 0 0 chr9 106906556 106906727 -10955900 + (TA)n Simple_repeat Simple_repeat 1 171 0 1955 209 75 60 chr9 106906779 106907430 -10955197 - L1MEc LINE L1 -5147 1249 589 24 0 0 0 chr9 106907459 106907483 -10955144 + AT_rich Low_complexity Low_complexity 1 24 0 2096 139 3 3 chr9 106908453 106908763 -10953864 - AluJb SINE Alu -2 310 1 2482 67 0 3 chr9 106908830 106909128 -10953499 - AluY SINE Alu -14 297 1 612 141 56 21 chr9 106909320 106909462 -10953165 - L1MB7 LINE L1 -1543 5101 4955 1461 179 52 42 chr9 106909466 106909773 -10952854 - AluJo SINE Alu -2 310 1 813 167 0 0 chr9 106909777 106909897 -10952730 - AluJb SINE Alu -192 120 1 2143 176 22 26 chr9 106909899 106910360 -10952267 - L1MB7 LINE L1 -2184 4460 4002 636 212 21 42 chr9 106910388 106910577 -10952050 - L1MB7 LINE L1 -3269 3375 3191 14900 122 30 31 chr9 106910596 106912038 -10950589 + Tigger1 DNA MER2_type 1 1442 -976 1620 195 7 7 chr9 106912038 106912340 -10950287 + AluJo SINE Alu 1 302 -10 14900 122 30 31 chr9 106912340 106912444 -10950183 + Tigger1 DNA MER2_type 1442 1545 -873 2060 126 0 35 chr9 106912444 106912761 -10949866 + AluSx SINE Alu 7 312 0 14900 122 30 31 chr9 106912761 106913112 -10949515 + Tigger1 DNA MER2_type 1545 1895 -523 1183 127 66 61 chr9 106913112 106913218 -10949409 - MER30 DNA MER1_type -1 229 125 2222 86 31 0 chr9 106913218 106913508 -10949119 - AluSq SINE Alu -14 299 1 1183 127 66 61 chr9 106913508 106913629 -10948998 - MER30 DNA MER1_type -105 125 1 14900 122 30 31 chr9 106913629 106913813 -10948814 + Tigger1 DNA MER2_type 1895 2078 -340 1985 161 10 0 chr9 106913813 106914117 -10948510 + AluJb SINE Alu 1 307 -5 14900 122 30 31 chr9 106914117 106914451 -10948176 + Tigger1 DNA MER2_type 2078 2418 0 3508 220 81 77 chr9 106914467 106915387 -10947240 - L1MB7 LINE L1 -3507 3137 2223 1943 131 7 0 chr9 106915387 106915677 -10946950 - AluSx SINE Alu -20 292 1 3508 220 81 77 chr9 106915677 106916307 -10946320 - L1MB7 LINE L1 -4421 2223 1597 1854 150 14 0 chr9 106916307 106916593 -10946034 - AluJb SINE Alu -22 290 1 3508 220 81 77 chr9 106916593 106916732 -10945895 - L1MB7 LINE L1 -5047 1597 1460 1537 214 12 68 chr9 106916732 106917143 -10945484 - MLT1B LTR MaLR 0 390 3 3508 220 81 77 chr9 106917143 106917187 -10945440 - L1MB7 LINE L1 -5184 1460 1418 2054 121 0 13 chr9 106917187 106917366 -10945261 - AluSx SINE Alu -1 311 136 2282 84 7 0 chr9 106917366 106917664 -10944963 - AluSq SINE Alu -13 300 1 2054 121 0 13 chr9 106917664 106917799 -10944828 - AluSx SINE Alu -176 136 1 2339 81 0 3 chr9 106917807 106918116 -10944511 - AluY SINE Alu -3 308 1 3508 220 81 77 chr9 106918116 106918568 -10944059 - L1MB7 LINE L1 -5232 1412 825 358 336 65 34 chr9 106918708 106919032 -10943595 - L1MB7 LINE L1 -6049 597 13 2140 82 3 33 chr9 106919078 106919383 -10943244 + AluSp SINE Alu 1 296 -17 279 240 39 29 chr9 106919423 106919527 -10943100 + L1P LINE L1 4901 5005 -1141 2324 85 0 0 chr9 106919528 106919835 -10942792 - AluY SINE Alu -4 307 1 798 136 0 8 chr9 106919864 106919982 -10942645 + AluJo SINE Alu 2 118 -194 243 0 0 0 chr9 106919982 106920009 -10942618 + (TAA)n Simple_repeat Simple_repeat 2 28 0 198 0 0 0 chr9 106920009 106920031 -10942596 + (TTA)n Simple_repeat Simple_repeat 2 23 0 447 313 62 43 chr9 106920184 106920506 -10942121 + L1MC4a LINE L1 5260 5595 -526 545 167 21 21 chr9 106920513 106920609 -10942018 + AluJo SINE Alu 126 221 -91 777 277 74 29 chr9 106920613 106921097 -10941530 + L1MC4a LINE L1 5599 6100 -21 287 303 96 27 chr9 106921401 106921623 -10941004 + MIR3 SINE MIR 3 256 -6 1968 127 3 13 chr9 106921716 106922016 -10940611 + AluJo SINE Alu 1 297 -15 276 316 46 7 chr9 106922497 106922649 -10939978 + L2 LINE L2 2820 2977 -336 857 204 6 19 chr9 106922710 106922867 -10939760 + FRAM SINE Alu 1 155 -11 1484 137 3 102 chr9 106922871 106923028 -10939599 + AluJo SINE Alu 2 112 -200 2117 93 7 23 chr9 106923028 106923328 -10939299 + AluSq SINE Alu 6 300 -13 1484 137 3 102 chr9 106923328 106923492 -10939135 + AluJo SINE Alu 112 291 -21 22 35 0 0 chr9 106926785 106926814 -10935813 + AT_rich Low_complexity Low_complexity 1 29 0 34 42 0 0 chr9 106927048 106927096 -10935531 + AT_rich Low_complexity Low_complexity 1 48 0 2310 84 0 0 chr9 106928174 106928472 -10934155 + AluSx SINE Alu 1 298 -14 22 0 0 0 chr9 106929191 106929213 -10933414 + AT_rich Low_complexity Low_complexity 1 22 0 1334 242 106 5 chr9 106929837 106930205 -10932422 + LTR33 LTR ERVL 115 519 -2 268 304 0 0 chr9 106930212 106930281 -10932346 - MIR SINE MIR -114 148 80 2106 88 21 0 chr9 106931452 106931737 -10930890 + AluSx SINE Alu 2 292 -20 23 0 0 0 chr9 106931737 106931760 -10930867 + AT_rich Low_complexity Low_complexity 1 23 0 289 290 43 0 chr9 106932130 106932223 -10930404 + MIR SINE MIR 138 234 -28 335 308 55 7 chr9 106933559 106933705 -10928922 - MIR SINE MIR -11 251 99 1907 128 0 13 chr9 106934399 106934705 -10927922 - AluSx SINE Alu -10 302 1 22 0 0 0 chr9 106934905 106934927 -10927700 + AT_rich Low_complexity Low_complexity 1 22 0 1811 122 0 44 chr9 106935832 106936127 -10926500 - AluSx SINE Alu -30 282 1 2168 74 0 7 chr9 106936270 106936554 -10926073 + AluSp SINE Alu 19 300 -13 191 242 197 0 chr9 106936634 106936700 -10925927 - L2 LINE L2 0 3272 3194 2319 77 0 0 chr9 106936870 106937167 -10925460 - AluSg SINE Alu -13 297 1 376 259 69 35 chr9 106937527 106937643 -10924984 - L2 LINE L2 -2 3311 3192 232 243 288 0 chr9 106937914 106938025 -10924602 - MIR SINE MIR -20 242 100 1665 152 18 0 chr9 106938640 106938917 -10923710 - AluJb SINE Alu -20 292 11 23 33 0 0 chr9 106939449 106939479 -10923148 + GC_rich Low_complexity Low_complexity 1 30 0 359 229 84 0 chr9 106939745 106939828 -10922799 - L2 LINE L2 -15 3257 3168 431 320 33 13 chr9 106940033 106940183 -10922444 - MIR SINE MIR -2 260 108 471 299 0 20 chr9 106940981 106941128 -10921499 - MIR SINE MIR -40 222 79 1935 92 11 7 chr9 106941514 106941796 -10920831 - AluSx SINE Alu -29 283 1 2303 61 6 29 chr9 106941928 106942240 -10920387 - AluY SINE Alu -6 305 1 189 0 0 0 chr9 106942284 106942305 -10920322 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 281 281 18 90 chr9 106942597 106942764 -10919863 + L2 LINE L2 2906 3060 -253 1111 198 127 7 chr9 106942948 106943231 -10919396 + MER33 DNA MER1_type 1 317 -7 277 264 88 25 chr9 106943238 106943397 -10919230 - L1M4 LINE L1 -1488 4658 4490 348 289 127 60 chr9 106943467 106943751 -10918876 - L1M4 LINE L1 -1769 4377 4075 237 261 120 0 chr9 106943848 106943940 -10918687 + MER103 DNA DNA 1 103 -63 1764 166 0 0 chr9 106944085 106944380 -10918247 + AluJb SINE Alu 1 295 -17 1395 153 31 44 chr9 106945227 106945398 -10917229 - AluJo SINE Alu -22 290 123 2148 75 24 14 chr9 106945398 106945693 -10916934 + AluSq SINE Alu 1 298 -15 1395 153 31 44 chr9 106945693 106945815 -10916812 - AluJo SINE Alu -189 123 1 23 54 0 0 chr9 106945815 106945852 -10916775 + AT_rich Low_complexity Low_complexity 1 37 0 256 265 24 12 chr9 106945873 106945956 -10916671 - L1ME4a LINE L1 -64 6057 5974 489 95 0 0 chr9 106946038 106946101 -10916526 + AluSc SINE Alu 20 82 -227 1530 58 0 0 chr9 106946102 106946291 -10916336 + AluSc SINE Alu 115 303 -6 405 294 158 27 chr9 106946295 106946433 -10916194 - L1MC4a LINE L1 -1959 5849 5730 297 0 0 0 chr9 106946433 106946466 -10916161 + (CA)n Simple_repeat Simple_repeat 1 33 0 405 294 158 27 chr9 106946466 106946694 -10915933 - L1MC4a LINE L1 -2078 5730 5435 1230 61 0 112 chr9 106946824 106947020 -10915607 + AluY SINE Alu 1 174 -137 967 178 0 35 chr9 106947020 106947222 -10915405 - AluJo SINE Alu -117 195 1 805 194 172 22 chr9 106947224 106947451 -10915176 + L1ME3A LINE L1 5910 6170 0 2493 51 0 3 chr9 106948397 106948709 -10913918 - AluY SINE Alu 0 311 1 1657 161 17 7 chr9 106949192 106949483 -10913144 + AluSx SINE Alu 1 294 -18 2233 105 0 3 chr9 106949486 106949792 -10912835 + AluSx SINE Alu 1 305 -7 2144 105 3 0 chr9 106950636 106950931 -10911696 - AluSx SINE Alu -16 296 1 826 161 16 0 chr9 106950942 106951066 -10911561 - FLAM_C SINE Alu -7 126 1 213 65 0 0 chr9 106951088 106951119 -10911508 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 1949 106 22 0 chr9 106951122 106951397 -10911230 - AluSx SINE Alu -31 281 1 359 297 93 6 chr9 106951737 106951919 -10910708 + L1MC4 LINE L1 7844 8041 -1 446 264 80 49 chr9 106952468 106952854 -10909773 + L1M4 LINE L1 3656 4053 -2093 252 317 0 0 chr9 106952886 106952946 -10909681 + G-rich Low_complexity Low_complexity 1 60 0 373 247 66 123 chr9 106953299 106953436 -10909191 + L2 LINE L2 3100 3220 -93 2015 108 6 19 chr9 106953436 106953751 -10908876 - AluSx SINE Alu -1 311 1 373 247 66 123 chr9 106953751 106953840 -10908787 + L2 LINE L2 3220 3313 0 2327 95 0 0 chr9 106954077 106954381 -10908246 + AluSx SINE Alu 1 304 -8 180 111 0 0 chr9 106954594 106954621 -10908006 + (A)n Simple_repeat Simple_repeat 1 27 0 198 292 31 15 chr9 106955292 106955357 -10907270 - MIR SINE MIR -112 150 85 2189 96 3 3 chr9 106955581 106955882 -10906745 - AluSc SINE Alu -8 301 1 284 268 134 0 chr9 106956084 106956181 -10906446 - L2 LINE L2 0 3272 3163 356 230 188 42 chr9 106956222 106956387 -10906240 - L2 LINE L2 -5 3308 3120 221 101 72 29 chr9 106956656 106956711 -10905916 + CT-rich Low_complexity Low_complexity 2 62 -11 1739 153 29 26 chr9 106956711 106957019 -10905608 - AluJo SINE Alu -3 309 1 221 101 72 29 chr9 106957019 106957032 -10905595 + CT-rich Low_complexity Low_complexity 62 73 0 378 249 179 49 chr9 106957044 106957264 -10905363 - MIR SINE MIR -10 252 11 1706 157 3 10 chr9 106958122 106958421 -10904206 - AluJb SINE Alu -15 297 1 683 214 61 26 chr9 106959231 106959441 -10903186 + MIR SINE MIR 36 259 -3 270 283 57 0 chr9 106960053 106960159 -10902468 + MIR3 SINE MIR 85 196 -12 243 318 24 0 chr9 106960420 106960505 -10902122 + L2 LINE L2 2578 2664 -650 207 242 20 91 chr9 106960956 106961055 -10901572 - L2 LINE L2 -636 2678 2587 264 271 35 56 chr9 106961186 106961330 -10901297 + L2 LINE L2 2919 3059 -213 521 290 134 14 chr9 106961763 106961980 -10900647 + MIR SINE MIR 20 262 0 593 204 51 36 chr9 106962790 106962927 -10899700 + MIR SINE MIR 11 149 -113 221 226 247 0 chr9 106963940 106964033 -10898594 - L2 LINE L2 -17 3255 3140 227 303 11 34 chr9 106964141 106964230 -10898397 + L3 LINE CR1 1483 1569 -8 2138 113 3 0 chr9 106964341 106964642 -10897985 + AluSx SINE Alu 1 302 -10 378 258 187 46 chr9 106965616 106966182 -10896445 - L1MC4a LINE L1 -1903 5905 5260 363 281 152 59 chr9 106966183 106966439 -10896188 - L1MC4a LINE L1 -881 5265 4986 318 269 0 0 chr9 106967703 106967781 -10894846 - L1MC/D LINE L1 -2163 5645 5568 447 270 41 20 chr9 106967955 106968122 -10894505 + MIR SINE MIR 88 257 -5 375 243 105 13 chr9 106969131 106969283 -10893344 + L1M LINE L1 5254 5419 -2389 2193 111 0 0 chr9 106969283 106969571 -10893056 + AluSx SINE Alu 1 288 -24 2174 144 0 0 chr9 106969696 106970008 -10892619 - AluSx SINE Alu 0 312 1 203 96 58 19 chr9 106972341 106972393 -10890234 + (TA)n Simple_repeat Simple_repeat 2 55 0 208 147 0 0 chr9 106972935 106972969 -10889658 + (T)n Simple_repeat Simple_repeat 1 34 0 194 0 0 37 chr9 106973767 106973794 -10888833 + (TTTTTG)n Simple_repeat Simple_repeat 3 28 0 180 0 0 0 chr9 106975439 106975459 -10887168 + (TTG)n Simple_repeat Simple_repeat 2 21 0 201 147 0 0 chr9 106975645 106975679 -10886948 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 22 0 0 0 chr9 106975957 106975979 -10886648 + AT_rich Low_complexity Low_complexity 1 22 0 312 355 116 28 chr9 106977175 106977493 -10885134 + L2 LINE L2 2966 3311 -2 224 289 134 10 chr9 106977751 106977848 -10884779 + MIR SINE MIR 19 127 -81 1983 143 21 0 chr9 106978305 106978592 -10884035 - AluJb SINE Alu -8 304 12 2390 89 0 3 chr9 106978601 106978905 -10883722 - AluY SINE Alu -8 303 1 1004 104 15 0 chr9 106978909 106979043 -10883584 - AluJo SINE Alu -176 136 1 1574 171 16 4 chr9 106979322 106979579 -10883048 - AluJb SINE Alu -19 293 34 251 256 232 8 chr9 106979769 106979894 -10882733 - L3 LINE CR1 -124 1453 1301 797 237 6 6 chr9 106980031 106980200 -10882427 - AluJb SINE Alu -110 202 34 251 256 232 8 chr9 106980391 106980516 -10882111 - L3 LINE CR1 -124 1453 1301 2451 66 16 0 chr9 106980539 106980843 -10881784 + AluSc SINE Alu 1 309 0 2239 117 3 0 chr9 106982386 106982694 -10879933 - AluSc SINE Alu 0 309 1 2145 114 0 54 chr9 106982696 106983013 -10879614 - AluSg SINE Alu -10 300 1 29 0 0 0 chr9 106983016 106983045 -10879582 + AT_rich Low_complexity Low_complexity 1 29 0 770 287 143 23 chr9 106983258 106983742 -10878885 + L1ME4a LINE L1 5285 5826 -295 841 138 0 0 chr9 106983755 106983871 -10878756 + FLAM_C SINE Alu 12 127 -16 1978 149 7 0 chr9 106984016 106984318 -10878309 + AluSx SINE Alu 1 304 -8 2123 132 0 0 chr9 106984401 106984697 -10877930 - AluSx SINE Alu -15 297 2 199 161 0 0 chr9 106984896 106984927 -10877700 - L2 LINE L2 -8 3305 3275 616 249 35 51 chr9 106985282 106985316 -10877311 - MIR SINE MIR -11 251 218 2290 88 27 10 chr9 106985316 106985611 -10877016 - AluSx SINE Alu -12 300 1 616 249 35 51 chr9 106985611 106985773 -10876854 - MIR SINE MIR -44 218 58 750 282 122 31 chr9 106985809 106986228 -10876399 - L2 LINE L2 -30 3283 2827 2480 62 0 20 chr9 106986312 106986618 -10876009 - AluY SINE Alu -11 300 1 2057 125 14 3 chr9 106986719 106987008 -10875619 - AluJb SINE Alu -20 292 1 181 325 75 12 chr9 106987320 106987400 -10875227 - L2 LINE L2 -39 3233 3149 2246 108 20 0 chr9 106987432 106987728 -10874899 + AluSx SINE Alu 1 302 -10 460 260 80 52 chr9 106987865 106988069 -10874558 + LTR50 LTR ERVL 536 733 -62 2055 155 0 0 chr9 106988069 106988379 -10874248 - AluJo SINE Alu -2 310 1 2570 69 0 0 chr9 106988381 106988687 -10873940 - AluY SINE Alu -5 306 1 460 260 80 52 chr9 106988687 106988729 -10873898 + LTR50 LTR ERVL 733 792 -3 638 324 60 27 chr9 106989054 106989700 -10872927 + ERVL LTR ERVL 476 1204 -4560 465 299 51 80 chr9 106989690 106989768 -10872859 + ERVL LTR ERVL 1442 1521 -3475 * 2065 103 0 67 chr9 106989768 106989919 -10872708 + AluSx SINE Alu 1 161 -151 2245 79 18 0 chr9 106989919 106990219 -10872408 + AluSx SINE Alu 1 305 0 387 0 0 0 chr9 106990218 106990261 -10872366 + (CA)n Simple_repeat Simple_repeat 2 44 0 2065 103 0 67 chr9 106990219 106990420 -10872207 + AluSx SINE Alu 161 291 -21 465 299 51 80 chr9 106990420 106990616 -10872011 + ERVL LTR ERVL 1521 1721 -3275 2353 92 0 7 chr9 106990616 106990920 -10871707 + AluSg1 SINE Alu 1 302 -7 1612 101 9 0 chr9 106990920 106991139 -10871488 + AluSp SINE Alu 75 295 -18 465 299 51 80 chr9 106991139 106991294 -10871333 + ERVL LTR ERVL 1719 1849 -3147 1922 139 28 9 chr9 106991339 106991662 -10870965 - MLT1A1 LTR MaLR 0 365 37 2107 104 3 42 chr9 106991662 106991970 -10870657 + AluSx SINE Alu 1 296 -16 1905 144 14 0 chr9 106991982 106992259 -10870368 + AluSx SINE Alu 1 281 -31 2167 119 10 6 chr9 106992287 106992598 -10870029 + AluSx SINE Alu 1 312 0 295 119 0 0 chr9 106992598 106992640 -10869987 - MLT1A1 LTR MaLR -325 49 8 1530 276 25 14 chr9 106992677 106993111 -10869516 + ERVL LTR ERVL 2023 2461 -3303 1147 251 76 20 chr9 106993172 106993526 -10869101 - MER21B LTR ERV1 -84 779 406 870 273 78 68 chr9 106993526 106994163 -10868464 - PABL_B LTR ERV1 0 667 24 1228 228 21 14 chr9 106994248 106994537 -10868090 - MER21B LTR ERV1 -475 388 98 481 198 0 0 chr9 106994591 106994677 -10867950 - MER21B LTR ERV1 -773 90 5 692 250 47 91 chr9 106994689 106994813 -10867814 + ERVL LTR ERVL 2475 2603 -3161 2552 87 0 0 chr9 106994813 106995123 -10867504 - AluSg SINE Alu 0 310 1 692 250 47 91 chr9 106995123 106995318 -10867309 + ERVL LTR ERVL 2603 2780 -2984 492 191 122 0 chr9 106995326 106995441 -10867186 - REP3 LTR ERV 0 562 434 1323 165 84 72 chr9 106995470 106995711 -10866916 - REP3 LTR ERV -237 325 78 2279 108 3 3 chr9 106995711 106996018 -10866609 - AluSc SINE Alu -2 307 1 1323 165 84 72 chr9 106996018 106996097 -10866530 - REP3 LTR ERV -484 78 1 2262 274 50 7 chr9 106996108 106996790 -10865837 + ERVL LTR ERVL 2796 3506 -2258 2423 75 3 3 chr9 106996790 106997083 -10865544 + AluSg SINE Alu 1 293 -17 2451 175 27 44 chr9 106997083 106997164 -10865463 + MER82 DNA MER2_type 144 225 -428 2197 107 0 0 chr9 106997164 106997479 -10865148 + AluSx SINE Alu 1 315 0 2451 175 27 44 chr9 106997479 106997915 -10864712 + MER82 DNA MER2_type 225 653 0 1428 329 62 30 chr9 106997975 106998073 -10864554 - HERV16 LTR ERVL -3885 1111 1018 2117 107 7 10 chr9 106998073 106998371 -10864256 + AluSx SINE Alu 1 297 -15 1428 329 62 30 chr9 106998371 106999065 -10863562 - HERV16 LTR ERVL -3978 1018 294 244 267 17 0 chr9 106999328 106999388 -10863239 - LTR16B LTR ERVL 0 464 404 2337 92 3 0 chr9 106999388 106999682 -10862945 + AluSg SINE Alu 1 295 -15 879 314 37 14 chr9 106999704 107000058 -10862569 - LTR16B LTR ERVL -102 362 1 522 262 28 44 chr9 107000060 107000251 -10862376 - MIR SINE MIR -64 144 20 2205 199 113 48 chr9 107000522 107000792 -10861835 - MLT1E LTR MaLR 0 593 342 2208 106 0 0 chr9 107000792 107001125 -10861502 - AluSg SINE Alu 0 333 1 2205 199 113 48 chr9 107001125 107001410 -10861217 - MLT1E LTR MaLR -251 342 1 2141 143 0 7 chr9 107001743 107002050 -10860577 - AluSx SINE Alu -7 305 1 2157 98 49 3 chr9 107002078 107002365 -10860262 + AluSg SINE Alu 1 300 -10 2089 134 16 0 chr9 107002407 107002714 -10859913 + AluSx SINE Alu 1 312 0 3441 164 102 20 chr9 107002745 107003278 -10859349 - L1MB8 LINE L1 -56 6122 5511 1810 129 101 7 chr9 107003278 107003564 -10859063 - AluSq SINE Alu 0 313 1 3441 164 102 20 chr9 107003564 107003764 -10858863 - L1MB8 LINE L1 -667 5511 5329 714 306 35 15 chr9 107003825 107004086 -10858541 + L2 LINE L2 3048 3313 0 499 216 86 29 chr9 107004298 107004437 -10858190 - MIR SINE MIR 0 262 116 2431 89 6 10 chr9 107004437 107004750 -10857877 + AluSx SINE Alu 1 312 0 973 134 7 0 chr9 107004890 107005032 -10857595 - AluY SINE Alu -96 215 73 1936 131 3 14 chr9 107005032 107005323 -10857304 - AluJb SINE Alu -24 288 1 208 265 73 0 chr9 107005677 107005745 -10856882 + MIR SINE MIR 47 119 -143 405 233 52 109 chr9 107005765 107005958 -10856669 + MIR3 SINE MIR 23 204 -4 205 100 0 50 chr9 107006421 107006461 -10856166 + (CCCGG)n Simple_repeat Simple_repeat 4 41 0 216 0 0 0 chr9 107006595 107006619 -10856008 + (CGGGG)n Simple_repeat Simple_repeat 2 25 0 25 83 0 0 chr9 107006705 107006765 -10855862 + GC_rich Low_complexity Low_complexity 1 60 0 249 269 16 48 chr9 107006799 107006985 -10855642 + G-rich Low_complexity Low_complexity 1 180 0 2207 94 3 13 chr9 107008064 107008363 -10854264 + AluSx SINE Alu 1 296 -16 511 300 44 17 chr9 107009037 107009217 -10853410 + MIR SINE MIR 8 192 -70 410 324 0 0 chr9 107009362 107009473 -10853154 + MIR3 SINE MIR 83 193 -15 297 220 17 0 chr9 107009557 107009616 -10853011 + L2 LINE L2 3213 3272 0 1820 128 62 4 chr9 107009912 107010186 -10852441 - AluJb SINE Alu -21 291 2 2463 57 10 0 chr9 107010240 107010536 -10852091 - AluSp SINE Alu -14 299 1 785 321 24 8 chr9 107011021 107011267 -10851360 + MIR SINE MIR 12 261 -1 180 330 10 50 chr9 107011340 107011440 -10851187 - L2 LINE L2 -81 3232 3137 185 353 82 68 chr9 107011512 107011719 -10850908 + L2 LINE L2 3014 3223 -49 208 226 48 65 chr9 107011843 107011905 -10850722 - L2 LINE L2 -5 3308 3248 291 341 98 0 chr9 107012249 107012381 -10850246 - L2 LINE L2 -3 3269 3125 698 255 24 19 chr9 107012424 107012636 -10849991 + MIR SINE MIR 13 225 -37 509 311 67 38 chr9 107013176 107013414 -10849213 + MIR SINE MIR 6 250 -12 21 0 0 0 chr9 107013815 107013836 -10848791 + AT_rich Low_complexity Low_complexity 1 21 0 343 272 11 11 chr9 107014395 107014487 -10848140 + L2 LINE L2 2711 2802 -512 488 338 38 0 chr9 107014502 107014659 -10847968 + L2 LINE L2 3110 3272 0 821 218 55 0 chr9 107015227 107015392 -10847235 - FAM SINE Alu -1 174 1 317 292 12 99 chr9 107016324 107016411 -10846216 - L2 LINE L2 0 3313 3220 2164 84 0 3 chr9 107016411 107016696 -10845931 + AluSp SINE Alu 1 284 -29 267 54 0 0 chr9 107016699 107016736 -10845891 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 317 292 12 99 chr9 107016736 107016815 -10845812 - L2 LINE L2 -95 3218 3158 2002 131 0 7 chr9 107016832 107017137 -10845490 + AluSx SINE Alu 1 303 -9 544 235 10 0 chr9 107017144 107017246 -10845381 + FLAM_A SINE Alu 6 108 -34 230 105 105 0 chr9 107017246 107017284 -10845343 + Alu SINE Alu 128 169 -6 328 317 134 5 chr9 107017352 107017538 -10845089 - L2 LINE L2 -209 3063 2854 189 280 20 0 chr9 107017783 107017833 -10844794 - L2 LINE L2 -1 3271 3221 255 265 143 122 chr9 107020097 107020335 -10842292 + L2 LINE L2 3014 3256 -16 312 248 101 37 chr9 107020787 107020896 -10841731 - MIR SINE MIR -126 136 21 23 0 0 0 chr9 107021558 107021581 -10841046 + AT_rich Low_complexity Low_complexity 1 23 0 418 330 26 11 chr9 107021582 107021773 -10840854 + HAL1 LINE L1 1474 1667 -840 1916 127 3 10 chr9 107021886 107022177 -10840450 - AluSx SINE Alu -15 297 9 1042 296 72 9 chr9 107022514 107022845 -10839782 - MLT1J LTR MaLR -47 464 113 402 330 48 29 chr9 107022946 107023219 -10839408 + L1ME LINE L1 5462 5739 -382 224 317 96 62 chr9 107023755 107023963 -10838664 - L2 LINE L2 -114 3158 2944 235 181 108 121 chr9 107024363 107024446 -10838181 - L2 LINE L2 0 3313 3232 243 324 27 0 chr9 107024472 107024546 -10838081 + MIR SINE MIR 154 229 -33 * 578 224 105 54 chr9 107024511 107024738 -10837889 - MIR SINE MIR -10 252 18 1853 69 0 8 chr9 107025475 107025720 -10836907 - AluY SINE Alu -14 297 55 347 291 77 33 chr9 107025941 107026123 -10836504 - L1ME4a LINE L1 -8 6113 5924 1939 120 20 10 chr9 107026199 107026499 -10836128 + L1MA2 LINE L1 6002 6304 0 648 265 82 27 chr9 107026528 107026747 -10835880 + L2 LINE L2 3078 3308 -5 230 269 26 13 chr9 107026776 107026854 -10835773 - L1ME4a LINE L1 -1949 5859 5781 430 313 6 31 chr9 107026969 107027132 -10835495 - MIR SINE MIR -25 237 79 457 301 98 32 chr9 107027201 107027974 -10834653 - L1ME4a LINE L1 -924 5222 4399 2193 110 0 13 chr9 107028169 107028477 -10834150 - AluSx SINE Alu -8 304 1 1023 194 217 0 chr9 107029671 107029924 -10832703 - L1MD3 LINE L1 -10 7985 7678 2065 117 0 3 chr9 107030232 107030532 -10832095 - AluSg SINE Alu -11 299 1 481 266 123 0 chr9 107031015 107031169 -10831458 - L2 LINE L2 -600 2714 2542 2038 105 37 0 chr9 107031297 107031591 -10831036 + AluSx SINE Alu 1 305 -7 396 323 34 38 chr9 107032230 107032348 -10830279 - MIR SINE MIR 0 262 144 1586 112 13 0 chr9 107032348 107032581 -10830046 + MER46A DNA MER2_type 1 236 0 396 323 34 38 chr9 107032581 107032697 -10829930 - MIR SINE MIR -118 144 29 2071 108 0 17 chr9 107033268 107033583 -10829044 + AluSx SINE Alu 1 310 0 242 298 77 19 chr9 107033625 107033729 -10828898 + L2 LINE L2 3150 3259 -13 8006 24 0 0 chr9 107033851 107035541 -10827086 - L1PA3 LINE L1 -1 6154 4461 13557 31 2 2 chr9 107035541 107037165 -10825462 + L1PA3 LINE L1 2830 4453 -1693 243 0 0 0 chr9 107037664 107037691 -10824936 + (GA)n Simple_repeat Simple_repeat 1 27 0 309 186 0 0 chr9 107037691 107037761 -10824866 + (TG)n Simple_repeat Simple_repeat 1 70 0 285 210 0 0 chr9 107038376 107038438 -10824189 + (TG)n Simple_repeat Simple_repeat 2 63 0 293 176 72 0 chr9 107038605 107038698 -10823929 + MIR SINE MIR 100 206 -2 240 301 82 14 chr9 107038855 107038928 -10823699 + L2 LINE L2 3181 3258 -55 1064 256 145 41 chr9 107039235 107039534 -10823093 + L2 LINE L2 2407 2674 -639 1893 111 0 70 chr9 107039534 107039849 -10822778 + AluSx SINE Alu 1 293 -19 1064 256 145 41 chr9 107039849 107040315 -10822312 + L2 LINE L2 2674 3264 -49 1713 164 98 59 chr9 107040326 107040765 -10821862 + Charlie4a DNA MER1_type 36 491 -17 189 356 11 35 chr9 107041853 107041940 -10820687 - MIR SINE MIR -1 261 177 551 238 159 16 chr9 107041970 107042159 -10820468 + MIR SINE MIR 15 230 -32 1469 152 55 28 chr9 107042889 107043178 -10819449 + AluJo SINE Alu 7 303 -9 189 0 0 0 chr9 107043178 107043199 -10819428 + (TA)n Simple_repeat Simple_repeat 1 21 0 248 179 0 0 chr9 107043199 107043255 -10819372 - L1MC4 LINE L1 -1339 6703 6648 2769 234 57 42 chr9 107043334 107044118 -10818509 - L1ME1 LINE L1 -1 6165 5366 2021 141 3 0 chr9 107044118 107044423 -10818204 - AluSx SINE Alu -6 306 1 2769 234 57 42 chr9 107044423 107044479 -10818148 - L1ME1 LINE L1 -800 5366 5312 452 288 100 30 chr9 107044669 107044999 -10817628 - L1MC4 LINE L1 0 8042 7690 509 79 0 13 chr9 107045218 107045294 -10817333 + (TCCC)n Simple_repeat Simple_repeat 1 75 0 2143 107 10 0 chr9 107045294 107045593 -10817034 - AluSx SINE Alu -10 302 1 240 339 102 21 chr9 107045782 107046115 -10816512 + L2 LINE L2 2305 2664 -650 412 213 75 0 chr9 107046358 107046452 -10816175 + MIR SINE MIR 108 208 -54 1777 151 28 0 chr9 107046581 107046872 -10815755 + AluJo SINE Alu 1 299 -13 913 272 133 17 chr9 107046872 107047173 -10815454 - MER102b DNA MER1_type -4 337 2 277 265 8 8 chr9 107048390 107048507 -10814120 + (TA)n Simple_repeat Simple_repeat 2 118 0 262 220 0 0 chr9 107048509 107048559 -10814068 + L2 LINE L2 3264 3313 0 947 279 33 12 chr9 107048644 107048888 -10813739 - MIR SINE MIR -13 249 1 192 171 63 162 chr9 107049102 107049134 -10813493 + MER5B DNA MER1_type 33 67 -111 2061 109 0 35 chr9 107049134 107049446 -10813181 + AluSx SINE Alu 1 301 -11 192 171 63 162 chr9 107049446 107049524 -10813103 + MER5B DNA MER1_type 67 132 -46 * 564 249 144 15 chr9 107049507 107049708 -10812919 - MIR SINE MIR -34 228 2 510 307 69 5 chr9 107050592 107050781 -10811846 + MIR SINE MIR 49 249 -13 271 263 69 31 chr9 107051090 107051250 -10811377 + L1ME4a LINE L1 5727 5892 -229 1711 160 13 20 chr9 107051295 107051601 -10811026 + AluJo SINE Alu 1 304 -8 386 215 131 98 chr9 107051624 107051838 -10810789 + L1ME4a LINE L1 5899 6119 -2 732 293 90 32 chr9 107052262 107052602 -10810025 + L2 LINE L2 2733 3166 -147 1575 201 0 3 chr9 107052602 107052896 -10809731 - AluJb SINE Alu -19 293 1 732 293 90 32 chr9 107052896 107053054 -10809573 + L2 LINE L2 3166 3313 0 2224 98 0 13 chr9 107053058 107053363 -10809264 - AluSc SINE Alu -8 301 1 286 297 84 10 chr9 107053368 107053515 -10809112 - MIR SINE MIR -61 147 34 666 309 42 5 chr9 107053537 107053754 -10808873 - MIR SINE MIR 0 262 38 1304 175 18 54 chr9 107053763 107053827 -10808800 - MER33 DNA MER1_type -2261 324 259 2304 81 3 0 chr9 107053827 107054124 -10808503 + AluSp SINE Alu 3 300 -13 1304 175 18 54 chr9 107054124 107054302 -10808325 - MER33 DNA MER1_type -2326 259 95 905 210 0 12 chr9 107054302 107054464 -10808163 - FAM SINE Alu -15 160 1 1304 175 18 54 chr9 107054464 107054551 -10808076 - MER33 DNA MER1_type -2490 95 6 207 69 0 0 chr9 107055675 107055704 -10806923 + (TG)n Simple_repeat Simple_repeat 1 29 0 669 298 30 60 chr9 107056166 107056737 -10805890 + HAL1b LINE L1 71 624 -724 301 339 27 36 chr9 107056949 107057061 -10805566 + L1MC4a LINE L1 6476 6586 -1222 330 203 16 0 chr9 107057064 107057128 -10805499 + L1MC5 LINE L1 6698 6762 -1199 357 324 136 36 chr9 107057265 107057929 -10804698 - L2 LINE L2 -338 2976 2247 206 217 43 0 chr9 107057930 107057976 -10804651 - MER5A DNA MER1_type 0 189 142 199 301 120 37 chr9 107058036 107058252 -10804375 - L2 LINE L2 -1065 2249 2016 181 211 0 39 chr9 107059387 107059439 -10803188 + MIR SINE MIR 36 85 -177 2152 120 0 0 chr9 107059446 107059754 -10802873 - AluSq SINE Alu -5 308 1 481 268 89 34 chr9 107059763 107059942 -10802685 + MIR SINE MIR 73 261 -1 2178 88 0 38 chr9 107060298 107060616 -10802011 - AluSp SINE Alu -7 306 1 1346 186 55 21 chr9 107060693 107060983 -10801644 - AluJo SINE Alu -12 300 1 30 27 0 0 chr9 107061008 107061045 -10801582 + AT_rich Low_complexity Low_complexity 1 37 0 1546 178 0 50 chr9 107061291 107061611 -10801016 - AluSx SINE Alu -8 304 1 690 251 114 13 chr9 107061796 107062145 -10800482 - MLT1J LTR MaLR -14 497 71 2342 172 19 15 chr9 107062178 107062643 -10799984 + L1MB7 LINE L1 5699 6165 -19 26 64 0 0 chr9 107062643 107062690 -10799937 + AT_rich Low_complexity Low_complexity 1 47 0 204 259 176 19 chr9 107062946 107063054 -10799573 + MIR3 SINE MIR 43 167 -41 1513 224 63 49 chr9 107063056 107063529 -10799098 + L1ME3A LINE L1 5455 5934 -236 257 228 31 24 chr9 107063599 107063726 -10798901 + Charlie7 DNA MER1_type 2479 2606 -6 311 230 30 50 chr9 107064698 107064798 -10797829 - MIR SINE MIR -95 113 16 241 219 0 61 chr9 107065025 107065107 -10797520 + L1MC5 LINE L1 7453 7529 -432 2268 82 3 0 chr9 107065107 107065400 -10797227 + AluSg SINE Alu 1 294 -16 1402 197 7 14 chr9 107065410 107065699 -10796928 + AluJo SINE Alu 1 287 -25 258 32 0 0 chr9 107065699 107065730 -10796897 + (TAGG)n Simple_repeat Simple_repeat 1 31 0 1621 142 25 4 chr9 107065913 107066188 -10796439 - L1MB2 LINE L1 -3 6168 5888 1859 122 20 10 chr9 107066204 107066498 -10796129 - AluSx SINE Alu -15 297 1 512 200 7 0 chr9 107068401 107068551 -10794076 + (CA)n Simple_repeat Simple_repeat 1 151 0 411 318 127 8 chr9 107068562 107068784 -10793843 - MIR SINE MIR -14 248 5 218 247 135 45 chr9 107069061 107069150 -10793477 - MER5C DNA MER1_type -3 321 225 515 235 17 17 chr9 107069165 107069284 -10793343 - MER5C DNA MER1_type -204 120 2 763 138 57 0 chr9 107070285 107070408 -10792219 + FLAM_C SINE Alu 1 130 -3 811 116 16 0 chr9 107070589 107070710 -10791917 + AluSg/x SINE Alu 174 296 -14 354 61 0 0 chr9 107071329 107071378 -10791249 + (TG)n Simple_repeat Simple_repeat 2 50 0 519 212 5 143 chr9 107071892 107072095 -10790532 + MER5B DNA MER1_type 1 175 -3 458 282 68 37 chr9 107072455 107072618 -10790009 - MER5B DNA MER1_type -7 171 4 193 298 18 0 chr9 107072899 107072956 -10789671 - L3 LINE CR1 -512 1065 1008 259 234 39 26 chr9 107073189 107073266 -10789361 + L3 LINE CR1 1192 1269 -308 588 286 47 28 chr9 107073670 107073839 -10788788 - MIR SINE MIR -14 248 73 2683 195 46 2 chr9 107073839 107074358 -10788269 - MLT1F LTR MaLR 0 542 1 588 286 47 28 chr9 107074358 107074401 -10788226 - MIR SINE MIR -189 73 32 774 258 0 11 chr9 107074409 107074591 -10788036 + MIR SINE MIR 57 236 -26 238 281 18 0 chr9 107074591 107074648 -10787979 - MIR SINE MIR 0 262 205 243 250 0 0 chr9 107074666 107074718 -10787909 + (TTG)n Simple_repeat Simple_repeat 3 54 0 2166 95 0 0 chr9 107074856 107075324 -10787303 - AluSq SINE Alu 0 468 1 588 285 110 49 chr9 107075395 107075988 -10786639 - L1MC5 LINE L1 -71 7890 7262 260 284 34 0 chr9 107076092 107076180 -10786447 - L1MC4a LINE L1 -632 7176 7086 1510 197 13 7 chr9 107076181 107076490 -10786137 - AluJo SINE Alu -1 311 1 274 260 13 0 chr9 107076543 107076620 -10786007 - L1MC5 LINE L1 -909 7052 6975 1378 256 38 13 chr9 107076673 107077068 -10785559 - L1MC4a LINE L1 -826 6982 6578 489 230 14 20 chr9 107077139 107077287 -10785340 + MLT1H LTR MaLR 95 241 -308 272 190 17 0 chr9 107077446 107077504 -10785123 + MLT1I LTR MaLR 317 375 -34 365 311 79 86 chr9 107077538 107077805 -10784822 - L1MC4 LINE L1 -1228 6597 6316 251 149 85 0 chr9 107077923 107077970 -10784657 + L2 LINE L2 3262 3312 -1 395 290 149 50 chr9 107078873 107079094 -10783533 + MIR SINE MIR 20 262 0 188 195 91 52 chr9 107079205 107079282 -10783345 + MIR SINE MIR 4 83 -179 901 185 0 0 chr9 107080512 107080658 -10781969 - FRAM SINE Alu -30 146 1 282 341 152 0 chr9 107080658 107080796 -10781831 - L2 LINE L2 -564 2750 2592 411 231 0 0 chr9 107081074 107081152 -10781475 + FLAM SINE Alu 38 115 -28 345 24 0 0 chr9 107081153 107081195 -10781432 + (CAT)n Simple_repeat Simple_repeat 2 43 0 183 350 10 31 chr9 107081756 107081853 -10780774 - L2 LINE L2 -2931 383 289 519 301 122 26 chr9 107082323 107082708 -10779919 + L2 LINE L2 2554 2975 -339 663 317 53 4 chr9 107083680 107083923 -10778704 + MIR SINE MIR 3 257 -5 315 214 71 127 chr9 107084009 107084135 -10778492 + L2 LINE L2 3193 3311 -2 518 241 129 18 chr9 107084162 107084332 -10778295 + MIR SINE MIR 4 192 -70 411 225 162 12 chr9 107084345 107084518 -10778109 - L1ME1 LINE L1 -6 6160 5962 * 1183 198 3 99 chr9 107084515 107084868 -10777759 - L1M4 LINE L1 -1408 4738 4420 3107 219 16 22 chr9 107084869 107085623 -10777004 - L1M4 LINE L1 -1903 4243 3495 564 75 0 0 chr9 107085685 107085752 -10776875 + L1PA4 LINE L1 32 98 -6048 * 40205 30 5 1 chr9 107085750 107091118 -10771509 + L1PA4 LINE L1 623 6009 -146 335 358 35 52 chr9 107091448 107091677 -10770950 + MIR SINE MIR 20 244 -18 204 264 19 0 chr9 107091646 107091699 -10770928 + L2 LINE L2 3259 3312 -1 * 698 243 11 55 chr9 107094305 107094486 -10768141 + MIR SINE MIR 77 249 -13 522 305 56 15 chr9 107094662 107094859 -10767768 - MIR SINE MIR -9 253 49 717 265 91 14 chr9 107095160 107095379 -10767248 - MIR SINE MIR -6 256 21 2201 231 103 60 chr9 107096575 107096710 -10765917 + L1ME1 LINE L1 5178 5306 -860 3326 67 13 25 chr9 107096710 107097157 -10765470 + MLT2A1 LTR ERVL 3 444 0 2201 231 103 60 chr9 107097157 107097180 -10765447 + L1ME1 LINE L1 5306 5327 -839 1670 127 13 50 chr9 107097180 107097479 -10765148 + AluJo SINE Alu 18 305 -7 2201 231 103 60 chr9 107097479 107098246 -10764381 + L1ME1 LINE L1 5327 6161 -5 276 330 38 0 chr9 107098287 107098393 -10764234 + HAL1 LINE L1 1809 1918 -589 244 314 0 0 chr9 107098526 107098596 -10764031 + HAL1 LINE L1 2074 2143 -364 229 254 328 0 chr9 107098813 107098935 -10763692 + HAL1 LINE L1 2344 2505 -2 2300 86 0 3 chr9 107099111 107099413 -10763214 - AluSx SINE Alu -11 301 1 342 264 31 31 chr9 107099655 107099784 -10762843 + GA-rich Low_complexity Low_complexity 1 129 0 288 130 0 0 chr9 107100023 107100069 -10762558 + (ATG)n Simple_repeat Simple_repeat 1 46 0 874 274 110 29 chr9 107100200 107100689 -10761938 - L2 LINE L2 -63 3250 2727 213 121 0 0 chr9 107101521 107101554 -10761073 + (A)n Simple_repeat Simple_repeat 1 33 0 246 250 0 0 chr9 107101558 107101618 -10761009 - L1ME4a LINE L1 0 6121 6062 2053 102 17 3 chr9 107101654 107101947 -10760680 - AluSx SINE Alu -15 297 1 585 202 0 0 chr9 107101947 107102041 -10760586 - FLAM_A SINE Alu -29 113 20 867 263 8 57 chr9 107102137 107102399 -10760228 - MIR SINE MIR 0 262 14 342 275 36 79 chr9 107103091 107103313 -10759314 + L1M4 LINE L1 3820 4051 -2095 593 91 0 11 chr9 107103341 107103429 -10759198 + L1PA12 LINE L1 6078 6164 -4 449 157 43 107 chr9 107103429 107103540 -10759087 + L1ME1 LINE L1 5714 5817 -349 2192 85 0 0 chr9 107103540 107103851 -10758776 + AluY SINE Alu 1 311 0 449 157 43 107 chr9 107103851 107103878 -10758749 + L1ME1 LINE L1 5817 5844 -322 752 134 280 0 chr9 107103903 107104060 -10758567 - MER105 DNA DNA -1 203 3 1247 166 63 47 chr9 107104076 107104200 -10758427 - MER33 DNA MER1_type -2261 324 203 6914 120 52 42 chr9 107104200 107104485 -10758142 + Tigger3b DNA MER2_type 2 283 -2745 1879 118 25 0 chr9 107104485 107104811 -10757816 - AluSx SINE Alu 0 333 1 6914 120 52 42 chr9 107104811 107104930 -10757697 + Tigger3b DNA MER2_type 283 399 -2629 1997 83 18 4 chr9 107104930 107105232 -10757395 - AluSx SINE Alu 0 306 1 6914 120 52 42 chr9 107105232 107106042 -10756585 + Tigger3b DNA MER2_type 399 1231 0 1247 166 63 47 chr9 107106042 107106236 -10756391 - MER33 DNA MER1_type -2382 203 1 459 285 55 24 chr9 107106656 107106821 -10755806 + MIR3 SINE MIR 36 205 -3 248 223 39 10 chr9 107107131 107107234 -10755393 + GA-rich Low_complexity Low_complexity 4 109 0 701 303 48 24 chr9 107107726 107107977 -10754650 - MIR SINE MIR 0 262 6 493 316 32 11 chr9 107108097 107108284 -10754343 - MIR SINE MIR -6 256 66 247 245 224 10 chr9 107109095 107109193 -10753434 - L2 LINE L2 -20 3252 3134 318 376 119 41 chr9 107109923 107110335 -10752292 + L2 LINE L2 2829 3272 0 2140 82 3 3 chr9 107111689 107111982 -10750645 + AluSq SINE Alu 1 293 -20 262 343 69 0 chr9 107113470 107113572 -10749055 - MIR SINE MIR -141 121 13 623 282 97 5 chr9 107114309 107114525 -10748102 - MIR SINE MIR -12 250 15 903 305 85 68 chr9 107114924 107115870 -10746757 + L2 LINE L2 2301 3272 0 223 347 71 0 chr9 107115959 107116057 -10746570 - L2 LINE L2 -1 3271 3167 381 238 78 93 chr9 107116374 107116643 -10745984 - LTR37A LTR ERV1 -78 348 84 21 0 0 0 chr9 107116796 107116817 -10745810 + AT_rich Low_complexity Low_complexity 1 21 0 755 288 113 37 chr9 107117337 107117823 -10744804 - L1M4 LINE L1 -2814 3332 2810 373 288 43 68 chr9 107117823 107117986 -10744641 - L2 LINE L2 0 3272 3114 787 285 75 20 chr9 107118340 107118779 -10743848 - HAL1 LINE L1 -5 2502 2040 1653 97 0 0 chr9 107118882 107119109 -10743518 + AluSg/x SINE Alu 78 304 -6 225 370 59 0 chr9 107119307 107119442 -10743185 + L2 LINE L2 2514 2656 -658 264 265 77 26 chr9 107122343 107122460 -10740167 - MIR SINE MIR -109 153 31 433 256 0 0 chr9 107122772 107122854 -10739773 + MIR3 SINE MIR 90 171 -37 193 228 18 105 chr9 107122851 107122908 -10739719 + L3 LINE CR1 1519 1570 -7 * 467 325 119 24 chr9 107123099 107123351 -10739276 - L2 LINE L2 -18 3254 2979 361 283 190 19 chr9 107123356 107123561 -10739066 - MIR SINE MIR -7 255 16 1505 179 21 7 chr9 107126083 107126368 -10736259 + AluJo SINE Alu 1 289 -23 408 67 0 0 chr9 107126368 107126428 -10736199 + (GA)n Simple_repeat Simple_repeat 1 60 0 528 252 77 0 chr9 107127212 107127355 -10735272 + MIR SINE MIR 99 252 -10 466 318 74 16 chr9 107127797 107127986 -10734641 + MIR SINE MIR 46 245 -17 215 290 178 47 chr9 107128123 107128230 -10734397 + MIR3 SINE MIR 35 155 -53 1446 289 41 53 chr9 107128265 107128830 -10733797 - MLT1K LTR MaLR -15 573 16 569 294 33 49 chr9 107129018 107129202 -10733425 - MIR SINE MIR -10 252 72 374 317 91 16 chr9 107129401 107129587 -10733040 - L2 LINE L2 0 3272 3073 * 547 294 230 49 chr9 107129565 107130847 -10731780 - L2 LINE L2 -671 2643 1130 1587 128 0 16 chr9 107130937 107131194 -10731433 + AluSx SINE Alu 1 253 -59 3052 232 16 24 chr9 107131294 107132140 -10730487 - L1M4 LINE L1 -1538 4608 3769 193 208 0 42 chr9 107132415 107132463 -10730164 - L3 LINE CR1 -7 1570 1525 493 322 78 56 chr9 107132521 107132878 -10729749 - L3 LINE CR1 -179 1398 1034 824 155 158 75 chr9 107132878 107133044 -10729583 + L1MC/D LINE L1 5444 5595 -647 2000 118 0 0 chr9 107133044 107133324 -10729303 + AluSg SINE Alu 1 280 -30 186 43 0 0 chr9 107133332 107133355 -10729272 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 330 26 0 0 chr9 107133363 107133402 -10729225 + (CA)n Simple_repeat Simple_repeat 2 40 0 824 155 158 75 chr9 107133402 107133538 -10729089 + L1MC/D LINE L1 5607 5823 -419 502 301 29 35 chr9 107134172 107134345 -10728282 - MIR SINE MIR -83 179 8 211 160 140 0 chr9 107134969 107135019 -10727608 - L2 LINE L2 -84 3229 3173 239 196 89 0 chr9 107135020 107135076 -10727551 + L2 LINE L2 3211 3271 -1 1035 254 80 58 chr9 107135230 107135818 -10726809 - L2 LINE L2 -288 3025 2427 280 255 59 10 chr9 107136603 107136705 -10725922 + L2 LINE L2 1914 2020 -1294 864 92 0 0 chr9 107137550 107137669 -10724958 + AluSc SINE Alu 178 296 -13 313 253 152 0 chr9 107137920 107138019 -10724608 + L2 LINE L2 3200 3313 0 336 310 69 58 chr9 107138116 107138290 -10724337 + L2 LINE L2 3055 3230 -42 274 338 40 34 chr9 107138515 107138663 -10723964 - L2 LINE L2 -221 3051 2903 264 339 9 17 chr9 107138661 107138776 -10723851 - L2 LINE L2 -575 2739 2626 * 483 264 61 37 chr9 107138780 107138943 -10723684 + MIR SINE MIR 14 180 -82 220 219 16 16 chr9 107139610 107139674 -10722953 + (TGGA)n Simple_repeat Simple_repeat 4 67 0 210 388 37 27 chr9 107139834 107140022 -10722605 - L3b LINE CR1 -87 1496 1307 362 288 30 70 chr9 107140073 107140244 -10722383 + MIR SINE MIR 5 170 -65 322 194 15 15 chr9 107140250 107140317 -10722310 + MER94 DNA DNA 7 73 -61 1357 125 0 0 chr9 107140329 107140545 -10722082 + AluSq SINE Alu 94 309 0 301 259 34 36 chr9 107141333 107141434 -10721193 + MIR SINE MIR 50 149 -68 402 250 9 28 chr9 107141477 107141585 -10721042 - MER91B DNA MER1_type -83 107 2 263 250 16 0 chr9 107141587 107141651 -10720976 + MIR SINE MIR 148 212 -50 418 281 205 5 chr9 107141810 107141995 -10720632 - HAL1 LINE L1 -586 1921 1700 189 253 35 58 chr9 107142374 107142461 -10720166 + L3 LINE CR1 950 1034 -543 1986 141 0 0 chr9 107142485 107142789 -10719838 + AluSx SINE Alu 1 304 -8 725 137 0 84 chr9 107142952 107143083 -10719544 - AluJb SINE Alu -25 287 168 2845 157 31 13 chr9 107144720 107145197 -10717430 - MER66B LTR ERV1 0 486 1 1886 141 31 17 chr9 107146144 107146434 -10716193 - MER1B DNA MER1_type 0 339 46 667 249 44 20 chr9 107146450 107146699 -10715928 - L1ME LINE L1 -375 5746 5492 243 270 63 42 chr9 107147435 107147521 -10715106 - L1ME LINE L1 -2901 3245 3162 545 227 32 60 chr9 107147521 107147706 -10714921 + MER104 DNA MER2_type 1 180 0 243 270 63 42 chr9 107147706 107147995 -10714632 - L1ME LINE L1 -2984 3162 2856 2075 152 30 59 chr9 107148016 107148438 -10714189 - L1MB8 LINE L1 -1 6177 5769 1655 134 0 8 chr9 107148438 107148692 -10713935 - AluJo SINE Alu -20 292 41 2075 152 30 59 chr9 107148692 107148763 -10713864 - L1MB8 LINE L1 -409 5769 5698 5321 109 47 7 chr9 107149167 107149664 -10712963 - L1MA4A LINE L1 -6 6297 5751 336 24 0 0 chr9 107149664 107149705 -10712922 + (TG)n Simple_repeat Simple_repeat 2 42 0 5321 109 47 7 chr9 107149705 107150054 -10712573 - L1MA4A LINE L1 -552 5751 5417 2228 97 0 0 chr9 107150089 107150400 -10712227 - AluSq SINE Alu -2 311 1 395 297 251 0 chr9 107150857 107151052 -10711575 - MIR SINE MIR -17 245 2 497 316 115 52 chr9 107152913 107153468 -10709159 - L2 LINE L2 -82 3190 2615 189 225 56 42 chr9 107153780 107153851 -10708776 + L2 LINE L2 2571 2642 -672 373 260 130 42 chr9 107155091 107155283 -10707344 - MIR SINE MIR -42 220 12 1691 221 89 57 chr9 107155595 107156120 -10706507 + MLT1F LTR MaLR 1 542 0 358 304 48 80 chr9 107156541 107156791 -10705836 - HAL1b LINE L1 -7 1341 1100 535 345 59 22 chr9 107156899 107156967 -10705660 - L1ME LINE L1 -343 5778 5714 1313 155 78 0 chr9 107156967 107157186 -10705441 + MER46A DNA MER2_type 1 236 0 535 345 59 22 chr9 107157186 107157474 -10705153 - L1ME LINE L1 -407 5714 5409 586 275 126 16 chr9 107158807 107159045 -10703582 + MIR SINE MIR 3 262 0 1263 178 67 15 chr9 107160122 107160294 -10702333 - AluJb SINE Alu 0 305 111 207 69 0 0 chr9 107160294 107160323 -10702304 + (TTAA)n Simple_repeat Simple_repeat 2 30 0 1263 178 67 15 chr9 107160323 107160441 -10702186 - AluJb SINE Alu -194 111 1 217 269 45 30 chr9 107162250 107162317 -10700310 + MIR SINE MIR 117 184 -78 477 283 98 45 chr9 107162463 107163009 -10699618 - L1MC/D LINE L1 -743 5403 5073 202 293 61 20 chr9 107163556 107163655 -10698972 + MIR SINE MIR 46 148 -114 749 215 52 21 chr9 107164485 107164676 -10697951 + MIR SINE MIR 25 221 -41 2269 69 3 20 chr9 107165572 107165877 -10696750 + AluY SINE Alu 1 300 -11 757 248 191 5 chr9 107166037 107166247 -10696380 + MIR SINE MIR 14 262 0 469 238 30 0 chr9 107166274 107166375 -10696252 - MIR SINE MIR -111 151 48 354 271 65 51 chr9 107169299 107169513 -10693114 + MIR SINE MIR 7 223 -39 1117 236 128 81 chr9 107170089 107170657 -10691970 + MLT1G1 LTR MaLR 1 595 0 201 379 63 29 chr9 107170690 107170864 -10691763 - L2 LINE L2 -470 2844 2665 437 166 65 72 chr9 107171126 107171265 -10691362 + MIR SINE MIR 111 248 -14 491 266 136 10 chr9 107171389 107171594 -10691033 + MIR SINE MIR 1 227 -35 1542 283 52 29 chr9 107172205 107173198 -10689429 - L1MEc LINE L1 -4817 1444 321 242 232 16 104 chr9 107173313 107173438 -10689189 - L1MEc LINE L1 -5954 116 3 445 342 76 5 chr9 107173677 107173861 -10688766 - MIR SINE MIR -15 247 51 3053 74 67 0 chr9 107173915 107174334 -10688293 - L1PA7 LINE L1 -2 6152 5706 547 213 59 15 chr9 107174373 107174509 -10688118 + MER104 DNA Tc2 39 180 0 23 0 0 0 chr9 107175372 107175395 -10687232 + AT_rich Low_complexity Low_complexity 1 23 0 462 327 62 10 chr9 107175923 107176131 -10686496 + LTR33 LTR ERVL 3 221 -300 675 308 23 18 chr9 107176156 107176377 -10686250 + MIR SINE MIR 35 256 -6 566 207 101 50 chr9 107176718 107176897 -10685730 - MIR SINE MIR -69 193 6 452 336 29 33 chr9 107177447 107177691 -10684936 - MIR SINE MIR -3 259 17 235 297 102 0 chr9 107177692 107177810 -10684817 + MIR SINE MIR 56 185 -77 783 144 138 0 chr9 107177895 107178055 -10684572 - MER5A DNA MER1_type 0 189 8 280 286 0 60 chr9 107178569 107178653 -10683974 + L2 LINE L2 3194 3272 0 * 749 232 83 34 chr9 107178648 107178874 -10683753 + MIR SINE MIR 14 245 -17 203 171 0 0 chr9 107178878 107178919 -10683708 + (CAT)n Simple_repeat Simple_repeat 3 43 0 815 276 49 9 chr9 107178933 107179158 -10683469 + MIR SINE MIR 8 241 -21 186 43 0 0 chr9 107180426 107180449 -10682178 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 22 0 0 0 chr9 107180483 107180505 -10682122 + AT_rich Low_complexity Low_complexity 1 22 0 2310 96 3 10 chr9 107180902 107181205 -10681422 - AluSc SINE Alu -8 301 1 602 240 23 0 chr9 107181972 107182101 -10680526 - MIR SINE MIR -116 146 15 338 351 40 23 chr9 107182215 107182389 -10680238 - MIR SINE MIR -70 192 16 268 297 69 69 chr9 107183044 107183219 -10679408 + MIR SINE MIR 28 202 -60 963 260 9 0 chr9 107183729 107183948 -10678679 + MIR SINE MIR 28 248 -14 1002 218 0 0 chr9 107184329 107184540 -10678087 - L1P LINE L1 -2034 4112 3902 399 285 85 83 chr9 107184685 107185205 -10677422 - Charlie4 DNA MER1_type -822 1139 619 2179 129 0 0 chr9 107186080 107186412 -10676215 + AluSq SINE Alu 14 345 0 612 223 8 143 chr9 107186600 107186688 -10675939 + L1ME3A LINE L1 5483 5581 -581 868 61 9 0 chr9 107186688 107186802 -10675825 + L1PA10 LINE L1 6053 6167 -1 612 223 8 143 chr9 107186802 107186964 -10675663 + L1ME3A LINE L1 5581 5699 -463 2858 23 0 0 chr9 107186966 107187407 -10675220 - L1PA2 LINE L1 -671 5484 5044 5915 18 0 0 chr9 107187407 107188067 -10674560 + L1PA2 LINE L1 5496 6155 0 1637 223 43 14 chr9 107188077 107188522 -10674105 + L1ME3A LINE L1 5691 6148 -22 780 235 24 78 chr9 107188525 107188604 -10674023 + L1MEc LINE L1 1841 1923 -4473 2434 89 7 0 chr9 107188604 107188908 -10673719 - AluSq SINE Alu -7 306 1 780 235 24 78 chr9 107188908 107189198 -10673429 + L1MEc LINE L1 1923 2190 -4206 1419 174 151 0 chr9 107189209 107189373 -10673254 - AluSx SINE Alu -14 298 160 468 0 0 0 chr9 107189373 107189425 -10673202 + (TTTTG)n Simple_repeat Simple_repeat 5 56 0 1419 174 151 0 chr9 107189425 107189519 -10673108 - AluSx SINE Alu -152 160 1 293 176 72 0 chr9 107189822 107189915 -10672712 - MIR SINE MIR -2 206 100 2153 103 0 17 chr9 107189986 107190277 -10672350 + AluSp SINE Alu 28 313 0 2259 215 59 8 chr9 107190287 107190951 -10671676 + L1MEc LINE L1 2883 3580 -2635 * 3964 151 18 6 chr9 107190941 107191628 -10670999 + L1MC1 LINE L1 5610 6304 -29 198 0 0 0 chr9 107191628 107191650 -10670977 + (TTA)n Simple_repeat Simple_repeat 3 24 0 1464 24 6 0 chr9 107191650 107191819 -10670808 - L1PA4 LINE L1 -18 6137 5968 263 86 52 69 chr9 107192657 107192715 -10669912 - L2 LINE L2 -2 3270 3214 339 266 24 40 chr9 107192884 107193008 -10669619 - MIR SINE MIR -64 198 77 186 71 0 0 chr9 107193039 107193067 -10669560 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 21 0 0 0 chr9 107193106 107193127 -10669500 + AT_rich Low_complexity Low_complexity 1 21 0 337 339 41 0 chr9 107194845 107195016 -10667611 + MIR SINE MIR 50 227 -35 199 215 15 77 chr9 107195137 107195202 -10667425 - MIR SINE MIR -131 77 17 299 167 91 0 chr9 107195961 107196027 -10666600 + MLT1K LTR MaLR 517 588 0 266 295 82 33 chr9 107196039 107196161 -10666466 - L2 LINE L2 -1 3271 3144 316 212 30 0 chr9 107196208 107196274 -10666353 + MIR SINE MIR 78 145 -117 349 290 159 0 chr9 107196567 107196705 -10665922 - MIR3 SINE MIR 0 208 49 225 278 208 35 chr9 107197023 107197167 -10665460 + MIR SINE MIR 40 208 -54 261 83 0 0 chr9 107199976 107200012 -10662615 + (A)n Simple_repeat Simple_repeat 1 36 0 31 76 0 0 chr9 107200143 107200209 -10662418 + AT_rich Low_complexity Low_complexity 1 66 0 254 256 12 58 chr9 107200620 107200706 -10661921 + L3 LINE CR1 982 1063 -514 200 293 27 0 chr9 107201127 107201202 -10661425 + (TATATG)n Simple_repeat Simple_repeat 6 82 0 594 266 32 74 chr9 107201424 107201736 -10660891 - L1ME LINE L1 -343 5778 5480 2779 169 58 5 chr9 107202807 107203363 -10659264 + L1MB5 LINE L1 5590 6174 0 369 293 197 0 chr9 107203564 107203711 -10658916 - MIR SINE MIR -27 235 60 426 275 37 9 chr9 107204121 107204230 -10658397 + MIR SINE MIR 51 162 -100 318 293 50 43 chr9 107204261 107204401 -10658226 + L2 LINE L2 3123 3263 -50 2789 131 31 12 chr9 107204426 107204906 -10657721 - L1PA16 LINE L1 -3 6163 5675 309 291 8 17 chr9 107204907 107205024 -10657603 - AluSg/x SINE Alu -8 292 177 185 290 32 0 chr9 107205512 107205574 -10657053 + L2 LINE L2 3209 3272 0 200 243 14 29 chr9 107205908 107205978 -10656649 + (TATATG)n Simple_repeat Simple_repeat 6 74 0 681 311 15 0 chr9 107206677 107206873 -10655754 + MIR SINE MIR 46 244 -18 581 327 59 0 chr9 107208469 107208689 -10653938 - MIR SINE MIR -6 256 24 222 95 95 0 chr9 107209486 107209528 -10653099 - L2 LINE L2 -3 3310 3265 609 253 105 21 chr9 107209923 107210113 -10652514 - MIR SINE MIR -16 246 41 201 333 0 14 chr9 107210313 107210385 -10652242 + MIR SINE MIR 44 114 -94 609 253 105 21 chr9 107210657 107210847 -10651780 - MIR SINE MIR -16 246 41 470 315 105 0 chr9 107211033 107211233 -10651394 + MIR SINE MIR 28 248 -14 254 301 60 54 chr9 107212209 107212375 -10650252 + MIR SINE MIR 20 186 -76 2230 101 0 19 chr9 107213227 107213534 -10649093 + AluSg SINE Alu 1 301 -9 226 276 207 0 chr9 107214935 107215022 -10647605 - MIR SINE MIR 0 262 158 387 316 71 8 chr9 107215907 107216066 -10646561 + MIR3 SINE MIR 11 180 -60 411 391 111 6 chr9 107218812 107219162 -10643465 - L3 LINE CR1 -1094 483 97 197 118 59 0 chr9 107219188 107219222 -10643405 + L2 LINE L2 3027 3062 -210 410 247 0 0 chr9 107220792 107220877 -10641750 + MIR SINE MIR 45 129 -133 320 258 125 17 chr9 107222664 107222784 -10639843 + L2 LINE L2 3138 3270 -2 * 539 278 94 7 chr9 107222773 107222981 -10639646 - MIR SINE MIR -26 236 13 222 354 101 0 chr9 107223222 107223301 -10639326 - MIR3 SINE MIR -13 195 109 637 296 70 24 chr9 107223307 107223520 -10639107 - MIR SINE MIR -24 238 16 237 292 0 28 chr9 107224380 107224452 -10638175 - L2 LINE L2 -2 3270 3201 272 259 241 18 chr9 107226145 107226257 -10636370 + L2 LINE L2 3136 3272 0 624 363 78 10 chr9 107226513 107226808 -10635819 - L2 LINE L2 0 3272 2958 * 3494 265 133 17 chr9 107226801 107228349 -10634278 + L2 LINE L2 1557 3311 -2 763 300 12 36 chr9 107228482 107228732 -10633895 - MIR SINE MIR -2 260 17 348 295 27 40 chr9 107229735 107229884 -10632743 - MIR SINE MIR -46 216 70 325 356 99 31 chr9 107229997 107230188 -10632439 - MIR SINE MIR -39 223 20 680 239 75 20 chr9 107231052 107231307 -10631320 - HAL1b LINE L1 -470 878 610 495 234 96 41 chr9 107231518 107231736 -10630891 - HAL1b LINE L1 -860 488 259 250 240 108 31 chr9 107233171 107233300 -10629327 - L3 LINE CR1 -856 721 583 328 220 314 17 chr9 107233357 107233475 -10629152 - MER5B DNA MER1_type -1 177 25 718 246 51 45 chr9 107234251 107234564 -10628063 - HAL1b LINE L1 -71 1277 963 2498 66 3 34 chr9 107234564 107234884 -10627743 + AluSx SINE Alu 1 310 -2 265 270 40 0 chr9 107235625 107235699 -10626928 - MIR SINE MIR -15 247 171 22 0 0 0 chr9 107235871 107235893 -10626734 + AT_rich Low_complexity Low_complexity 1 22 0 299 321 103 33 chr9 107235919 107236458 -10626169 + L1ME4a LINE L1 2927 3539 -2607 441 99 127 0 chr9 107236458 107236529 -10626098 + MADE1 DNA Mariner 1 80 0 299 321 103 33 chr9 107236529 107236772 -10625855 + L1ME4a LINE L1 3539 3764 -2382 706 261 148 55 chr9 107236904 107237283 -10625344 + L1ME4a LINE L1 4110 4523 -1623 683 281 151 31 chr9 107237434 107238687 -10623940 + L1ME4a LINE L1 4465 5883 -238 289 349 103 11 chr9 107239052 107239333 -10623294 + L2 LINE L2 2636 2942 -372 317 316 46 41 chr9 107239346 107239542 -10623085 + L2 LINE L2 3075 3271 -1 244 295 116 29 chr9 107241208 107241381 -10621246 - L2 LINE L2 -13 3300 3113 376 293 79 0 chr9 107241548 107241659 -10620968 - MIR SINE MIR -84 124 5 531 310 51 10 chr9 107241733 107241930 -10620697 + MIR SINE MIR 52 256 -6 552 252 54 20 chr9 107244461 107244608 -10618019 + MIR SINE MIR 31 182 -80 472 261 52 15 chr9 107245073 107245207 -10617420 - MIR3 SINE MIR -61 147 9 427 287 70 57 chr9 107245471 107245728 -10616899 + MIR SINE MIR 6 256 -6 218 315 110 0 chr9 107245752 107245825 -10616802 + MIR SINE MIR 115 195 -67 316 259 105 49 chr9 107245836 107245979 -10616648 - L2 LINE L2 0 3272 3122 402 263 70 9 chr9 107246575 107246689 -10615938 + MIR SINE MIR 13 133 -129 538 251 169 16 chr9 107247319 107247502 -10615125 + MIR SINE MIR 12 222 -40 329 292 77 44 chr9 107247561 107247924 -10614703 - L1MEd LINE L1 -3096 3033 2659 1983 139 4 0 chr9 107247963 107248243 -10614384 - AluSx SINE Alu -31 281 1 2174 148 0 0 chr9 107248243 107248548 -10614079 - AluJb SINE Alu -7 305 1 325 200 29 29 chr9 107248582 107248652 -10613975 + L1MCa LINE L1 1983 2052 -4374 * 472 370 13 22 chr9 107248645 107248875 -10613752 - L1MEd LINE L1 -3571 2558 2331 439 300 42 0 chr9 107250069 107250189 -10612438 - MIR SINE MIR -74 188 64 565 277 80 5 chr9 107250234 107250422 -10612205 - MLT1J2 LTR MaLR -119 331 130 261 279 38 0 chr9 107250422 107250501 -10612126 - MLT1J1 LTR MaLR -364 82 1 381 325 98 52 chr9 107250503 107250922 -10611705 - L2 LINE L2 -2498 816 379 230 257 151 49 chr9 107251108 107251293 -10611334 + MIR3 SINE MIR 10 252 -10 247 294 47 12 chr9 107251348 107251433 -10611194 - MIR SINE MIR -111 151 64 303 329 128 6 chr9 107251671 107251835 -10610792 + MIR SINE MIR 47 230 -32 389 322 95 44 chr9 107252756 107253132 -10609495 - L1MEd LINE L1 -5556 563 135 652 261 114 35 chr9 107253212 107253344 -10609283 - L3 LINE CR1 -627 950 830 2464 123 22 3 chr9 107253344 107253703 -10608924 + MER47A DNA MER2_type 1 366 0 652 261 114 35 chr9 107253703 107253911 -10608716 - L3 LINE CR1 -747 830 583 328 220 314 17 chr9 107253968 107254086 -10608541 - MER5B DNA MER1_type -1 177 25 2144 239 83 62 chr9 107254863 107255176 -10607451 - HAL1b LINE L1 -71 1277 972 2183 100 10 32 chr9 107255176 107255487 -10607140 + AluSx SINE Alu 1 304 -8 2144 239 83 62 chr9 107255487 107256171 -10606456 - HAL1b LINE L1 -376 972 259 2172 115 0 0 chr9 107257439 107257727 -10604900 + AluSx SINE Alu 1 288 -24 1276 99 222 19 chr9 107257728 107257940 -10604687 + AluSc SINE Alu 41 295 -14 478 153 10 10 chr9 107257943 107258041 -10604586 + GA-rich Low_complexity Low_complexity 4 101 0 484 250 0 47 chr9 107258041 107258169 -10604458 + MIR SINE MIR 21 142 -120 347 313 121 36 chr9 107258958 107259124 -10603503 + MIR SINE MIR 32 211 -51 260 241 136 77 chr9 107259330 107259503 -10603124 + MIR SINE MIR 48 225 -37 187 380 14 0 chr9 107260787 107260858 -10601769 + L2 LINE L2 3178 3249 -23 258 156 0 0 chr9 107260882 107260927 -10601700 + (TGGG)n Simple_repeat Simple_repeat 3 47 0 284 140 0 18 chr9 107261251 107261308 -10601319 + (CCCCAG)n Simple_repeat Simple_repeat 2 57 0 415 260 67 24 chr9 107261872 107262080 -10600547 - LTR33 LTR ERVL -304 217 1 258 177 32 32 chr9 107262087 107262149 -10600478 + MIR SINE MIR 117 178 -84 209 260 20 0 chr9 107262252 107262302 -10600325 + L2 LINE L2 3000 3050 -222 583 236 7 7 chr9 107262385 107262525 -10600102 + MER58B DNA MER1_type 182 321 -20 200 250 23 0 chr9 107262625 107262669 -10599958 + L2 LINE L2 3133 3177 -95 382 283 72 54 chr9 107264115 107264281 -10598346 + MIR SINE MIR 4 172 -90 1114 225 48 33 chr9 107264438 107264921 -10597706 - MLT1G LTR MaLR -13 577 11 424 303 119 5 chr9 107265001 107265186 -10597441 - MIR SINE MIR -18 244 39 822 157 0 43 chr9 107265775 107265915 -10596712 + FLAM_C SINE Alu 1 134 -9 784 117 14 41 chr9 107265947 107266020 -10596607 + MSTB1 LTR MaLR 292 365 -67 842 102 0 7 chr9 107266020 107266157 -10596470 + (TTCC)n Simple_repeat Simple_repeat 3 138 0 2253 96 10 0 chr9 107266157 107266449 -10596178 - AluSx SINE Alu -17 295 1 784 117 14 41 chr9 107266449 107266519 -10596108 + MSTB1 LTR MaLR 363 432 0 2217 128 58 28 chr9 107266549 107266948 -10595679 - MSTB LTR MaLR 0 426 16 1930 142 20 0 chr9 107267766 107268062 -10594565 + AluJb SINE Alu 3 304 -8 283 279 61 20 chr9 107268420 107268567 -10594060 - MIR3 SINE MIR -53 155 3 589 318 26 5 chr9 107269157 107269352 -10593275 + MIR SINE MIR 63 261 -1 406 351 29 11 chr9 107269597 107269771 -10592856 - MIR SINE MIR -75 187 11 228 264 182 8 chr9 107270812 107270933 -10591694 + MIR SINE MIR 115 256 -6 242 169 31 31 chr9 107271156 107271221 -10591406 + MIR SINE MIR 111 175 -87 387 310 35 29 chr9 107271598 107271772 -10590855 + MER5B DNA MER1_type 1 175 -3 1890 79 0 8 chr9 107271777 107272030 -10590597 - AluSg SINE Alu -7 303 53 276 226 102 66 chr9 107272337 107272404 -10590223 - LTR67 LTR ERVL -7 550 487 1456 133 8 158 chr9 107272404 107272766 -10589861 + AluSp SINE Alu 1 308 -5 276 226 102 66 chr9 107272766 107272835 -10589792 - LTR67 LTR ERVL -70 487 409 227 320 40 0 chr9 107273250 107273325 -10589302 + MIR SINE MIR 113 190 -72 402 239 81 81 chr9 107273336 107273545 -10589082 - LTR33 LTR ERVL -9 512 304 * 466 255 35 21 chr9 107273517 107273662 -10588965 - LTR33 LTR ERVL -374 147 1 1155 162 20 5 chr9 107274058 107274278 -10588349 - AluJb SINE Alu 0 308 86 714 324 68 22 chr9 107274286 107275083 -10587544 - L1ME2 LINE L1 -299 5865 5031 394 320 132 4 chr9 107275121 107275402 -10587225 - L1ME2 LINE L1 -1177 4969 4653 2536 55 0 0 chr9 107275429 107275736 -10586891 - AluY SINE Alu -4 307 1 224 352 37 0 chr9 107275799 107275907 -10586720 - L2 LINE L2 -568 2746 2635 840 177 0 46 chr9 107276243 107276418 -10586209 + AluJb SINE Alu 137 303 -9 262 323 79 31 chr9 107276460 107276714 -10585913 - L2 LINE L2 -1152 2162 1897 415 301 98 17 chr9 107277897 107278070 -10584557 - MIR SINE MIR -56 206 20 2286 82 0 0 chr9 107278162 107278453 -10584174 - AluSx SINE Alu -21 291 1 218 323 0 0 chr9 107278454 107278516 -10584111 + MIR SINE MIR 42 103 -105 446 170 0 10 chr9 107279493 107279593 -10583034 + CT-rich Low_complexity Low_complexity 4 102 0 316 335 80 11 chr9 107279690 107279878 -10582749 - MIR SINE MIR -29 233 33 367 277 32 39 chr9 107279947 107280102 -10582525 - MIR SINE MIR -70 192 39 266 203 0 14 chr9 107283660 107283734 -10578893 + (CA)n Simple_repeat Simple_repeat 1 73 0 318 406 0 0 chr9 107283766 107283931 -10578696 + (CA)n Simple_repeat Simple_repeat 1 165 0 463 308 41 27 chr9 107284068 107284296 -10578331 - MIR SINE MIR -32 230 1 225 186 0 0 chr9 107284667 107284710 -10577917 + (TTCA)n Simple_repeat Simple_repeat 2 44 0 227 297 102 78 chr9 107284710 107284838 -10577789 - L2 LINE L2 0 3313 3183 1040 155 8 32 chr9 107287932 107288181 -10574446 - AluJo SINE Alu -16 296 1 3094 63 0 11 chr9 107290033 107290412 -10572215 - THE1C LTR MaLR 0 375 1 636 242 30 6 chr9 107290675 107290840 -10571787 + MIR SINE MIR 61 229 -33 199 260 41 0 chr9 107290848 107290971 -10571656 + (CAT)n Simple_repeat Simple_repeat 3 130 0 207 0 0 0 chr9 107291261 107291284 -10571343 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 286 251 26 0 chr9 107291753 107291830 -10570797 + MIR3 SINE MIR 93 155 -53 345 278 113 8 chr9 107292191 107292324 -10570303 + MIR SINE MIR 14 160 -102 437 303 196 30 chr9 107294559 107294932 -10567695 - L2 LINE L2 -1 3271 2837 455 294 28 56 chr9 107297488 107297668 -10564959 - MER5A DNA MER1_type -6 183 9 1413 212 156 7 chr9 107297911 107298335 -10564292 + Charlie4a DNA MER1_type 18 504 -4 588 316 16 5 chr9 107299179 107299366 -10563261 - MIR SINE MIR -39 223 35 233 283 242 32 chr9 107299881 107300100 -10562527 + L3 LINE CR1 581 845 -732 386 257 29 52 chr9 107300105 107300241 -10562386 + L1MC/D LINE L1 5603 5735 -2073 192 312 153 55 chr9 107300448 107300650 -10561977 + L3 LINE CR1 904 1125 -452 317 307 6 26 chr9 107301038 107301192 -10561435 + L1MC/D LINE L1 5681 5829 -321 412 285 154 24 chr9 107301536 107301789 -10560838 - L1ME3A LINE L1 -232 5938 5653 519 300 176 0 chr9 107302153 107302363 -10560264 + MIR SINE MIR 16 262 0 185 156 0 22 chr9 107303004 107303049 -10559578 + (TG)n Simple_repeat Simple_repeat 1 44 0 258 0 0 67 chr9 107308667 107308712 -10553915 + (CGGGG)n Simple_repeat Simple_repeat 5 46 0 304 213 14 64 chr9 107308891 107309032 -10553595 + (CGGGG)n Simple_repeat Simple_repeat 1 134 0 24 32 0 0 chr9 107309082 107309113 -10553514 + GC_rich Low_complexity Low_complexity 1 31 0 229 362 69 17 chr9 107310090 107310206 -10552421 + L2 LINE L2 2766 2887 -427 263 304 70 0 chr9 107310211 107310326 -10552301 + L2 LINE L2 3150 3272 0 212 208 0 21 chr9 107310581 107310629 -10551998 - L2 LINE L2 -77 3236 3190 958 205 67 5 chr9 107310728 107310923 -10551704 + MER3 DNA MER1_type 1 207 -2 2281 110 0 0 chr9 107311120 107311428 -10551199 + AluSx SINE Alu 1 308 -4 1728 170 7 10 chr9 107311438 107311738 -10550889 + AluJo SINE Alu 1 299 -13 848 284 103 32 chr9 107311863 107312464 -10550163 - L1ME4a LINE L1 -213 5908 5265 2160 104 7 7 chr9 107312616 107312925 -10549702 - AluSx SINE Alu -3 309 1 312 313 7 41 chr9 107313047 107313194 -10549433 - MER5B DNA MER1_type -7 171 30 1751 169 3 3 chr9 107313289 107313596 -10549031 - AluJo SINE Alu -4 308 2 745 254 96 5 chr9 107313927 107314147 -10548480 + MIR SINE MIR 11 250 -12 2175 84 24 0 chr9 107314179 107314476 -10548151 + AluSp SINE Alu 1 304 -9 378 315 0 0 chr9 107314768 107314857 -10547770 - L1MC4 LINE L1 -1340 6702 6614 308 281 10 31 chr9 107314776 107314859 -10547768 + L1MCa LINE L1 1996 2078 -4348 * 2274 57 0 63 chr9 107314859 107315177 -10547450 - AluY SINE Alu -13 298 1 308 281 10 31 chr9 107315177 107315189 -10547438 + L1MCa LINE L1 2078 2089 -4337 195 343 0 0 chr9 107315386 107315447 -10547180 - L3 LINE CR1 -3 1574 1514 679 194 15 0 chr9 107315447 107315463 -10547164 + MER5A DNA MER1_type 1 18 -171 261 321 36 43 chr9 107315463 107315603 -10547024 - MER5A DNA MER1_type -2 187 49 * 644 239 51 23 chr9 107315596 107315772 -10546855 - MER5A DNA MER1_type -5 184 4 357 391 45 5 chr9 107315772 107315971 -10546656 - L3 LINE CR1 -54 1523 1317 1834 167 3 3 chr9 107316114 107316414 -10546213 - AluJo SINE Alu -12 300 1 298 301 92 13 chr9 107316501 107316733 -10545894 - MLT1K LTR MaLR -57 531 264 330 224 294 0 chr9 107316741 107316826 -10545801 + AluJb SINE Alu 141 250 -52 1051 204 9 23 chr9 107316826 107317042 -10545585 + AluJo SINE Alu 85 297 -15 513 232 16 16 chr9 107317042 107317167 -10545460 - MLT1K LTR MaLR -314 274 150 190 288 30 0 chr9 107318331 107318397 -10544230 + L3 LINE CR1 905 972 -605 1858 196 60 9 chr9 107318434 107318781 -10543846 - MLT1A1 LTR MaLR 0 365 1 786 155 51 0 chr9 107318964 107319118 -10543509 - MER33 DNA MER1_type -260 64 1 881 228 28 9 chr9 107319469 107319680 -10542947 - L2 LINE L2 -1317 1997 1783 320 372 40 18 chr9 107319819 107320045 -10542582 + L3 LINE CR1 1204 1434 -143 1029 150 167 57 chr9 107320292 107320519 -10542108 - AluJo SINE Alu -54 258 7 273 275 33 42 chr9 107320788 107320908 -10541719 - LTR67 LTR ERVL -2 555 437 341 278 86 70 chr9 107321105 107321292 -10541335 - LTR67 LTR ERVL -269 288 99 1189 83 0 19 chr9 107321896 107322053 -10540574 - AluSg SINE Alu -121 189 36 430 251 86 53 chr9 107324240 107324342 -10538285 + LTR16A1 LTR ERVL 160 257 -200 921 188 137 31 chr9 107324342 107324433 -10538194 - MER33 DNA MER1_type -2261 324 244 1648 173 0 25 chr9 107324433 107324717 -10537910 + AluJo SINE Alu 13 289 -23 921 188 137 31 chr9 107324717 107324918 -10537709 - MER33 DNA MER1_type -2341 244 1 430 251 86 53 chr9 107324918 107325058 -10537569 + LTR16A1 LTR ERVL 257 410 -47 207 0 0 0 chr9 107325552 107325575 -10537052 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1083 140 13 0 chr9 107325577 107325734 -10536893 - AluSg/x SINE Alu -17 295 137 342 0 0 0 chr9 107325739 107325777 -10536850 + (TTG)n Simple_repeat Simple_repeat 2 39 0 318 307 102 17 chr9 107327212 107327388 -10535239 - L2 LINE L2 0 3313 3123 270 194 139 0 chr9 107327398 107327470 -10535157 - L2 LINE L2 -5 3267 3186 202 258 45 0 chr9 107327569 107327635 -10534992 + L2 LINE L2 3189 3257 -56 385 274 0 0 chr9 107327863 107327947 -10534680 - MER5B DNA MER1_type -25 153 70 321 339 109 40 chr9 107327883 107328205 -10534422 - L2 LINE L2 -9 3263 2920 * 526 269 64 23 chr9 107328228 107328399 -10534228 - MER5B DNA MER1_type 0 178 1 658 266 110 5 chr9 107329473 107329691 -10532936 - MIR SINE MIR -6 256 16 2049 130 0 3 chr9 107330328 107330621 -10532006 + AluSx SINE Alu 1 292 -20 213 39 0 0 chr9 107330733 107330759 -10531868 + (T)n Simple_repeat Simple_repeat 1 26 0 668 219 31 41 chr9 107331074 107331270 -10531357 - MLT1K LTR MaLR 0 588 395 2618 123 17 10 chr9 107331441 107331847 -10530780 - L1MA2 LINE L1 0 6304 5896 2074 140 0 10 chr9 107332403 107332717 -10529910 - AluJb SINE Alu -1 311 1 648 241 186 49 chr9 107333060 107333109 -10529518 + L1MC4a LINE L1 5638 5679 -2129 1934 147 0 7 chr9 107333109 107333421 -10529206 + AluJb SINE Alu 1 310 0 648 241 186 49 chr9 107333421 107333535 -10529092 + L1MC4a LINE L1 5679 5776 -2032 2247 95 7 3 chr9 107333535 107333830 -10528797 + AluSq SINE Alu 3 298 -15 648 241 186 49 chr9 107333830 107334132 -10528495 + L1MC4a LINE L1 5776 6169 -1639 324 302 118 40 chr9 107334184 107334532 -10528095 - L2 LINE L2 -792 2522 2148 1476 228 46 61 chr9 107335540 107336085 -10526542 + MER34 LTR ERV1 1 537 -5 304 284 5 144 chr9 107336207 107336415 -10526212 - MIR SINE MIR -14 248 70 369 190 38 0 chr9 107336542 107336621 -10526006 - L1ME2 LINE L1 0 6164 6083 313 259 37 83 chr9 107337078 107337186 -10525441 + L3 LINE CR1 1214 1316 -261 251 325 103 8 chr9 107337215 107337332 -10525295 - L2 LINE L2 -5 3308 3181 399 305 99 22 chr9 107337553 107337776 -10524851 + L3 LINE CR1 1310 1549 -28 300 296 19 22 chr9 107337917 107338025 -10524602 - MER5B DNA MER1_type -22 167 60 1442 281 51 48 chr9 107338047 107338309 -10524318 + L1ME3A LINE L1 5017 5277 -893 2358 85 0 0 chr9 107338309 107338591 -10524036 + AluSx SINE Alu 16 297 -15 1442 281 51 48 chr9 107338591 107339242 -10523385 + L1ME3A LINE L1 5277 5948 -222 227 184 0 0 chr9 107339462 107339500 -10523127 + MER5A DNA MER1_type 149 186 -3 376 228 211 0 chr9 107339511 107339625 -10523002 - MER5A DNA MER1_type 0 189 52 516 254 115 0 chr9 107340323 107340445 -10522182 + L2 LINE L2 3136 3271 -1 3285 175 35 70 chr9 107340468 107341270 -10521357 - L1MD1 LINE L1 -1 6241 5468 299 333 0 20 chr9 107341617 107341719 -10520908 - L2 LINE L2 0 3313 3214 516 244 216 6 chr9 107341727 107341903 -10520724 - MIR SINE MIR -3 259 47 2008 159 3 0 chr9 107342165 107342467 -10520160 + AluJo SINE Alu 1 303 -9 28 0 0 0 chr9 107343462 107343490 -10519137 + AT_rich Low_complexity Low_complexity 1 28 0 1362 133 76 61 chr9 107343562 107343825 -10518802 + AluJo SINE Alu 1 267 -45 273 353 26 0 chr9 107343825 107343941 -10518686 - MIR SINE MIR -41 221 103 239 317 163 16 chr9 107344104 107344227 -10518400 + MER5A DNA MER1_type 8 148 -41 1262 181 42 5 chr9 107344346 107344562 -10518065 - MER58A DNA MER1_type 0 224 1 699 264 89 34 chr9 107344650 107344781 -10517846 - MLT1J2 LTR MaLR 0 450 328 2447 82 0 0 chr9 107344781 107345075 -10517552 + AluSq SINE Alu 1 294 -19 699 264 89 34 chr9 107345075 107345178 -10517449 - MLT1J2 LTR MaLR -122 328 203 605 209 52 26 chr9 107345294 107345447 -10517180 - MLT1J2 LTR MaLR -290 160 4 329 258 0 0 chr9 107345594 107345660 -10516967 - L2 LINE L2 -1 3271 3206 249 328 23 62 chr9 107348737 107348865 -10513762 - L2 LINE L2 -14 3258 3136 318 261 90 36 chr9 107349243 107349354 -10513273 + MIR SINE MIR 8 125 -83 582 267 89 0 chr9 107349358 107349531 -10513096 + MIR SINE MIR 33 218 -44 1055 213 11 5 chr9 107349756 107349944 -10512683 - MER5A DNA MER1_type 0 189 1 22 35 0 0 chr9 107350086 107350115 -10512512 + AT_rich Low_complexity Low_complexity 1 29 0 262 289 157 20 chr9 107350115 107350409 -10512218 - L1ME4a LINE L1 -80 6041 5708 387 280 25 8 chr9 107350894 107351012 -10511615 - L2 LINE L2 -3 3310 3191 192 274 39 0 chr9 107351313 107351364 -10511263 + L2 LINE L2 2648 2700 -614 4898 152 16 68 chr9 107351377 107351826 -10510801 - L1MB4 LINE L1 0 6180 5709 1957 158 0 3 chr9 107351826 107352130 -10510497 - AluJo SINE Alu -8 304 2 4898 152 16 68 chr9 107352130 107353129 -10509498 - L1MB4 LINE L1 -471 5709 4781 425 321 195 16 chr9 107353131 107353653 -10508974 + L2 LINE L2 2687 3301 -12 396 327 80 0 chr9 107354098 107354211 -10508416 + L2 LINE L2 3151 3272 0 1774 77 32 28 chr9 107355323 107355571 -10507056 - AluSc SINE Alu -21 288 40 188 86 29 0 chr9 107355807 107355842 -10506785 + (TTA)n Simple_repeat Simple_repeat 1 36 0 620 243 8 95 chr9 107355847 107356110 -10506517 - MIR SINE MIR -10 252 13 384 264 0 0 chr9 107358870 107358961 -10503666 + L2 LINE L2 1852 1942 -1372 660 155 0 29 chr9 107359000 107359103 -10503524 - FLAM_C SINE Alu -22 121 22 582 303 156 37 chr9 107359120 107359608 -10503019 + L2 LINE L2 1979 2524 -790 761 219 96 5 chr9 107359670 107359853 -10502774 - MIR SINE MIR -33 229 30 319 254 212 17 chr9 107359910 107360028 -10502599 - MER5A DNA MER1_type 0 189 49 217 338 94 80 chr9 107360523 107360822 -10501805 + L2 LINE L2 2930 3232 -40 434 197 94 8 chr9 107360953 107361070 -10501557 - L1ME4a LINE L1 -3 6118 5992 1796 202 50 44 chr9 107361468 107361924 -10500703 - MLT1C LTR MaLR -1 466 8 247 305 9 38 chr9 107363593 107363698 -10498929 - L2 LINE L2 -1849 1465 1364 264 274 69 127 chr9 107364829 107365074 -10497553 + L2 LINE L2 3042 3272 0 995 256 12 21 chr9 107365188 107365430 -10497197 - MIR SINE MIR -10 252 13 944 117 107 61 chr9 107366074 107366222 -10496405 + MER3 DNA MER1_type 3 164 -45 2103 141 3 0 chr9 107366222 107366521 -10496106 + AluJb SINE Alu 1 300 -12 944 117 107 61 chr9 107366521 107366569 -10496058 + MER3 DNA MER1_type 164 208 -1 397 291 49 18 chr9 107367307 107367592 -10495035 - L1MEd LINE L1 -2983 3146 2853 887 185 0 0 chr9 107367680 107367826 -10494801 - FAM SINE Alu -22 163 18 1933 96 61 0 chr9 107367989 107368250 -10494377 + AluSp SINE Alu 1 277 -36 494 344 96 23 chr9 107368306 107368734 -10493893 - L1MEd LINE L1 -3456 2673 2215 274 291 176 45 chr9 107369722 107370011 -10492616 - MLT1J1 LTR MaLR -71 375 49 263 281 71 99 chr9 107370833 107371225 -10491402 - L2 LINE L2 -16 3256 2876 284 286 14 68 chr9 107371249 107371396 -10491231 - L2 LINE L2 -619 2695 2557 396 269 10 10 chr9 107371768 107371872 -10490755 - MER117 DNA MER1_type -49 148 45 2034 230 83 32 chr9 107372054 107372616 -10490011 - MER77 LTR ERV1 -4 601 53 815 233 32 41 chr9 107372792 107373011 -10489616 + MIR SINE MIR 12 228 -34 198 0 0 0 chr9 107374557 107374579 -10488048 + (T)n Simple_repeat Simple_repeat 1 22 0 483 273 106 12 chr9 107374706 107374867 -10487760 + MIR SINE MIR 86 261 -1 338 292 31 10 chr9 107375646 107375742 -10486885 + MIR SINE MIR 15 112 -150 1060 231 0 11 chr9 107376111 107376375 -10486252 - L1M4 LINE L1 -817 5329 5069 430 314 93 70 chr9 107376378 107377152 -10485475 - L1MEd LINE L1 -5214 905 107 2156 101 4 0 chr9 107377152 107377430 -10485197 - AluSg SINE Alu -31 279 1 430 314 93 70 chr9 107377430 107377537 -10485090 - L1MEd LINE L1 -6012 107 4 305 296 126 40 chr9 107377572 107377819 -10484808 - L2 LINE L2 -3 3310 3043 308 186 71 29 chr9 107378067 107378137 -10484490 - MER5C DNA MER1_type -240 84 12 362 285 32 49 chr9 107378141 107378264 -10484363 - L3 LINE CR1 -33 1544 1424 1027 220 55 77 chr9 107378266 107378590 -10484037 - MER21B LTR ERV1 -77 786 470 3595 117 14 4 chr9 107378590 107379086 -10483541 - MER1A DNA MER1_type 0 529 29 1572 264 32 44 chr9 107379095 107379293 -10483334 - MER21B LTR ERV1 -396 467 268 2436 95 3 0 chr9 107379293 107379599 -10483028 - AluSq SINE Alu -6 307 1 1572 264 32 44 chr9 107379599 107379873 -10482754 - MER21B LTR ERV1 -595 268 1 187 308 51 13 chr9 107379875 107379953 -10482674 - L3 LINE CR1 -152 1425 1345 1852 159 0 13 chr9 107379959 107380267 -10482360 - AluJb SINE Alu -8 304 1 180 111 0 0 chr9 107380271 107380298 -10482329 + (T)n Simple_repeat Simple_repeat 1 27 0 2352 102 0 13 chr9 107380993 107381307 -10481320 - AluSq SINE Alu -3 310 1 522 278 56 34 chr9 107381319 107381585 -10481042 - L1ME4a LINE L1 -286 5835 5564 2241 84 30 3 chr9 107381863 107382160 -10480467 + AluY SINE Alu 1 305 -6 1699 97 48 44 chr9 107382270 107382378 -10480249 - AluSq SINE Alu -64 249 143 2377 78 16 0 chr9 107382378 107382684 -10479943 - AluY SINE Alu 0 311 1 1699 97 48 44 chr9 107382684 107382823 -10479804 - AluSq SINE Alu -170 143 1 2167 87 63 0 chr9 107383287 107383574 -10479053 - AluSx SINE Alu -7 305 1 475 332 7 20 chr9 107383863 107384164 -10478463 - L3 LINE CR1 -231 1346 974 353 271 180 8 chr9 107384235 107384357 -10478270 + MIR SINE MIR 2 144 -118 506 317 9 26 chr9 107384386 107384613 -10478014 - L3 LINE CR1 -711 866 644 2535 54 0 13 chr9 107384745 107385060 -10477567 - AluY SINE Alu 0 311 1 378 271 79 55 chr9 107385062 107385423 -10477204 + L1MC4a LINE L1 5517 5947 -189 2466 79 0 0 chr9 107385688 107385993 -10476634 + AluY SINE Alu 1 305 -6 277 176 0 55 chr9 107386073 107386164 -10476463 + (TATATG)n Simple_repeat Simple_repeat 3 88 0 2371 243 52 40 chr9 107387070 107387346 -10475281 + L1ME3 LINE L1 5420 5691 -471 2324 110 0 3 chr9 107387346 107387656 -10474971 - AluSx SINE Alu -3 309 1 2371 243 52 40 chr9 107387656 107388087 -10474540 + L1ME3 LINE L1 5691 6136 -26 1758 171 26 20 chr9 107388380 107388561 -10474066 - AluJb SINE Alu -6 306 121 209 56 0 28 chr9 107388561 107388597 -10474030 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1758 171 26 20 chr9 107388597 107388719 -10473908 - AluJb SINE Alu -191 121 1 844 180 31 16 chr9 107388926 107389120 -10473507 - Charlie4a DNA MER1_type -15 493 297 1855 145 7 30 chr9 107389120 107389265 -10473362 + AluSx SINE Alu 1 137 -175 2554 54 0 0 chr9 107389265 107389561 -10473066 + AluY SINE Alu 1 296 -15 1855 145 7 30 chr9 107389561 107389712 -10472915 + AluSx SINE Alu 137 290 -22 1045 231 22 11 chr9 107389736 107390005 -10472622 - Charlie4a DNA MER1_type -198 310 39 338 262 131 8 chr9 107390042 107390164 -10472463 - MER5A DNA MER1_type 0 189 53 23 78 0 0 chr9 107390602 107390653 -10471974 + AT_rich Low_complexity Low_complexity 1 51 0 1383 222 100 84 chr9 107390961 107391172 -10471455 + L1MC4 LINE L1 7339 7545 -497 1205 153 54 10 chr9 107391172 107391375 -10471252 + L1PA15 LINE L1 5954 6165 0 1383 222 100 84 chr9 107391375 107391856 -10470771 + L1MC4 LINE L1 7545 8042 0 769 269 36 9 chr9 107392033 107392252 -10470375 + MIR SINE MIR 31 255 -7 353 270 132 10 chr9 107392254 107392458 -10470169 + L1ME4a LINE L1 3595 3823 -2323 182 260 104 13 chr9 107392646 107392723 -10469904 - MIR SINE MIR -153 109 26 2053 122 27 0 chr9 107393318 107393612 -10469015 + AluSx SINE Alu 1 302 -10 791 263 150 20 chr9 107393643 107394084 -10468543 + L1ME4a LINE L1 5497 5994 -127 322 244 0 24 chr9 107394999 107395081 -10467546 - L2 LINE L2 0 3272 3193 542 319 14 14 chr9 107395094 107395304 -10467323 + MIR SINE MIR 49 258 -4 1230 261 119 7 chr9 107395701 107396131 -10466496 - MLT1L LTR MaLR -6 609 132 257 143 36 0 chr9 107397340 107397396 -10465231 + CT-rich Low_complexity Low_complexity 2 59 0 324 271 127 55 chr9 107397602 107397838 -10464789 - L2 LINE L2 -174 3139 2887 1990 143 0 34 chr9 107398173 107398495 -10464132 + AluJo SINE Alu 1 311 -1 922 135 0 7 chr9 107399078 107399219 -10463408 + FLAM_C SINE Alu 1 140 -3 2121 100 31 7 chr9 107400261 107400584 -10462043 + AluSx SINE Alu 1 312 0 571 289 66 37 chr9 107401034 107401276 -10461351 - MIR SINE MIR -12 250 2 656 288 81 9 chr9 107401604 107401826 -10460801 - MIR SINE MIR -24 238 1 2170 128 3 0 chr9 107402021 107402318 -10460309 + AluSg SINE Alu 1 298 -12 571 236 187 1 chr9 107402850 107403043 -10459584 + MIR SINE MIR 37 262 0 314 315 46 9 chr9 107403065 107403173 -10459454 - MIR3 SINE MIR -14 194 83 624 287 6 11 chr9 107403670 107403844 -10458783 - MER5B DNA MER1_type -3 175 3 1976 100 60 11 chr9 107403955 107404236 -10458391 - AluSq SINE Alu -18 295 1 221 239 0 0 chr9 107405382 107405428 -10457199 + (TG)n Simple_repeat Simple_repeat 1 46 0 242 19 0 135 chr9 107406572 107406624 -10456003 + L1MA3 LINE L1 6261 6305 0 1984 153 0 13 chr9 107406785 107407098 -10455529 + AluJb SINE Alu 1 309 -3 188 255 78 78 chr9 107407557 107407659 -10454968 - MIR SINE MIR -71 137 36 1363 264 174 29 chr9 107408398 107409199 -10453428 + L2 LINE L2 2395 3308 -5 233 29 29 0 chr9 107409203 107409237 -10453390 + (ATTG)n Simple_repeat Simple_repeat 4 38 0 977 66 8 0 chr9 107409280 107409402 -10453225 + L1MA2 LINE L1 6166 6288 -16 2336 151 25 3 chr9 107409472 107409829 -10452798 + MLT1A1 LTR MaLR 1 365 0 256 274 26 26 chr9 107409837 107409954 -10452673 + L1ME4a LINE L1 5836 5952 -169 872 246 67 37 chr9 107409961 107410258 -10452369 - L2 LINE L2 0 3313 3008 1271 100 23 64 chr9 107460382 107460602 -10402025 + L1PA11 LINE L1 5964 6174 0 2312 88 0 10 chr9 107460647 107460954 -10401673 + AluSx SINE Alu 1 304 -8 1882 142 3 16 chr9 107461155 107461472 -10401155 - MLT1B LTR MaLR -77 313 1 547 280 48 12 chr9 107461587 107461755 -10400872 - MIR SINE MIR -78 184 11 492 232 0 0 chr9 107461998 107462093 -10400534 + MER3 DNA MER1_type 5 99 -110 268 241 0 0 chr9 107462097 107462151 -10400476 + MER3 DNA MER1_type 48 101 -108 732 230 0 18 chr9 107462153 107462318 -10400309 + MER3 DNA MER1_type 48 209 0 1845 150 7 0 chr9 107462381 107462674 -10399953 - AluJo SINE Alu -17 295 1 259 260 95 41 chr9 107463500 107463669 -10398958 + MER5B DNA MER1_type 1 178 0 358 273 97 10 chr9 107463833 107464003 -10398624 + L1ME LINE L1 5656 5834 -310 231 303 0 55 chr9 107464115 107464224 -10398403 + HAL1b LINE L1 1235 1337 -11 22 0 0 0 chr9 107464254 107464276 -10398351 + AT_rich Low_complexity Low_complexity 1 22 0 2380 80 0 13 chr9 107464317 107464628 -10397999 - AluSq SINE Alu -6 307 1 1803 142 10 3 chr9 107464636 107464925 -10397702 - AluJo SINE Alu -20 292 2 547 239 33 42 chr9 107465293 107465417 -10397210 - L1ME1 LINE L1 -1 6165 6042 2183 105 0 10 chr9 107465417 107465722 -10396905 + AluSx SINE Alu 1 302 -10 547 239 33 42 chr9 107465722 107465810 -10396817 - L1ME1 LINE L1 -124 6042 5955 1285 163 0 25 chr9 107465812 107466052 -10396575 - AluJo SINE Alu 0 312 79 738 277 69 67 chr9 107466197 107466357 -10396270 - L1ME1 LINE L1 -399 5763 5605 2355 79 3 0 chr9 107466357 107466660 -10395967 + AluSx SINE Alu 4 307 -5 738 277 69 67 chr9 107466660 107466875 -10395752 - L1ME1 LINE L1 -557 5605 5387 320 141 16 62 chr9 107466878 107466964 -10395663 - AluSg/x SINE Alu 0 301 219 2131 85 0 7 chr9 107468047 107468351 -10394276 - AluSx SINE Alu 0 302 1 201 373 7 7 chr9 107469005 107469147 -10393480 + L2 LINE L2 2918 3059 -213 355 258 178 12 chr9 107469257 107469420 -10393207 - MIR SINE MIR -65 197 8 200 329 85 0 chr9 107469466 107469548 -10393079 + L2 LINE L2 3143 3231 -41 365 123 0 111 chr9 107469633 107469714 -10392913 + MIR SINE MIR 106 177 -85 2313 80 0 46 chr9 107469803 107470130 -10392497 - AluSx SINE Alu 0 312 1 306 289 35 18 chr9 107470231 107470345 -10392282 - MIR3 SINE MIR -29 179 64 202 346 46 81 chr9 107472129 107472389 -10390238 - L2 LINE L2 -119 3153 2903 206 324 28 0 chr9 107472727 107472798 -10389829 - MIR3 SINE MIR -37 171 99 614 258 86 11 chr9 107473920 107474106 -10388521 - MIR SINE MIR 0 262 63 290 82 41 0 chr9 107474407 107474456 -10388171 + GA-rich Low_complexity Low_complexity 2 52 0 180 0 0 0 chr9 107474526 107474546 -10388081 + (CCCCAG)n Simple_repeat Simple_repeat 4 23 0 1980 124 20 7 chr9 107475807 107476106 -10386521 + AluJo SINE Alu 10 312 0 2320 91 0 3 chr9 107476126 107476434 -10386193 + AluSx SINE Alu 1 307 -5 2242 84 3 10 chr9 107476483 107476793 -10385834 + AluY SINE Alu 1 308 -3 2222 97 0 0 chr9 107477003 107477292 -10385335 + AluSx SINE Alu 1 289 -23 1484 206 0 7 chr9 107477295 107477586 -10385041 + L1MB8 LINE L1 5884 6172 -6 714 133 74 37 chr9 107477642 107477777 -10384850 + FLAM_C SINE Alu 2 141 -2 2244 77 0 3 chr9 107478464 107478774 -10383853 + AluSp SINE Alu 1 309 0 2039 128 0 3 chr9 107478783 107479081 -10383546 + AluSq SINE Alu 1 297 -16 676 243 0 0 chr9 107479205 107479345 -10383282 + HAL1 LINE L1 170 309 -2198 2333 87 0 3 chr9 107479365 107479675 -10382952 + AluY SINE Alu 1 309 -2 284 289 0 36 chr9 107479688 107479771 -10382856 + HAL1 LINE L1 568 647 -1860 2214 104 0 0 chr9 107479905 107480203 -10382424 + AluSg1 SINE Alu 1 298 -11 219 319 118 10 chr9 107480264 107480468 -10382159 - L2 LINE L2 -459 2855 2630 291 267 39 62 chr9 107481368 107481471 -10381156 + L1ME4a LINE L1 5259 5333 -813 2028 136 0 13 chr9 107481471 107481781 -10380846 + AluSx SINE Alu 1 306 -6 291 267 39 62 chr9 107481781 107481843 -10380784 + L1ME4a LINE L1 5333 5395 -751 327 270 81 14 chr9 107482342 107482490 -10380137 - MIR3 SINE MIR -27 181 24 344 313 55 8 chr9 107482892 107483020 -10379607 + MIR3 SINE MIR 68 201 -7 389 295 72 42 chr9 107483300 107483389 -10379238 - MIR SINE MIR -6 256 171 1870 146 30 0 chr9 107483389 107483684 -10378943 - AluSx SINE Alu -8 304 1 389 295 72 42 chr9 107483684 107483787 -10378840 - MIR SINE MIR -91 171 58 2073 99 14 3 chr9 107483961 107484253 -10378374 - AluSc SINE Alu -14 295 1 1191 123 6 0 chr9 107484479 107484650 -10377977 + AluSq SINE Alu 1 172 -141 361 310 120 33 chr9 107484652 107484836 -10377791 + L1ME4a LINE L1 5718 5917 -204 2386 82 0 0 chr9 107484844 107485147 -10377480 - AluSx SINE Alu -9 303 1 507 319 114 8 chr9 107485192 107485455 -10377172 - L1ME LINE L1 -577 5585 5295 187 259 17 17 chr9 107485526 107485584 -10377043 - L2 LINE L2 -187 3085 3028 317 296 6 0 chr9 107485941 107486113 -10376514 + (TG)n Simple_repeat Simple_repeat 1 173 0 323 330 28 0 chr9 107486317 107486426 -10376201 - MIR SINE MIR 0 262 151 236 280 70 0 chr9 107486426 107486526 -10376101 - L3 LINE CR1 -100 1477 1371 303 280 47 19 chr9 107486933 107487040 -10375587 - MIR SINE MIR -78 130 21 2308 88 3 0 chr9 107487571 107487877 -10374750 - AluSp SINE Alu -4 309 3 1805 98 0 0 chr9 107487889 107488146 -10374481 - AluSx SINE Alu 0 311 55 1917 105 0 15 chr9 107488620 107488887 -10373740 - AluSg SINE Alu -45 265 3 1633 157 56 0 chr9 107488998 107489302 -10373325 - AluJb SINE Alu 0 319 1 2085 127 3 0 chr9 107489303 107489603 -10373024 - AluSx SINE Alu -11 301 1 2441 68 0 3 chr9 107489607 107489916 -10372711 - AluY SINE Alu -3 308 1 973 185 28 0 chr9 107489926 107490104 -10372523 - AluJ SINE Alu -22 290 108 748 155 0 9 chr9 107490155 107490271 -10372356 - AluJ SINE Alu -195 117 3 1281 39 7 0 chr9 107490704 107490858 -10371769 - L1MA2 LINE L1 0 6304 6150 1486 129 0 0 chr9 107490858 107491075 -10371552 - AluSq SINE Alu -2 311 95 2201 101 0 0 chr9 107491448 107491745 -10370882 - AluSx SINE Alu -15 297 1 196 167 48 0 chr9 107492349 107492391 -10370236 + MIR SINE MIR 104 147 -61 237 338 0 12 chr9 107492497 107492577 -10370050 - MIR SINE MIR -67 141 63 2276 97 3 0 chr9 107492819 107493129 -10369498 - AluSx SINE Alu -1 311 1 1988 86 38 24 chr9 107493267 107493559 -10369068 - AluSc SINE Alu -13 296 1 947 115 0 0 chr9 107493665 107493795 -10368832 - AluJb SINE Alu -19 293 164 1832 137 20 7 chr9 107493809 107494115 -10368512 - AluJb SINE Alu -2 310 1 2314 94 10 0 chr9 107494125 107494432 -10368195 - AluSx SINE Alu -2 310 1 858 150 21 0 chr9 107494792 107494932 -10367695 + AluJb SINE Alu 144 286 -26 180 0 0 0 chr9 107494934 107494954 -10367673 + (TG)n Simple_repeat Simple_repeat 1 20 0 2320 110 138 34 chr9 107494960 107495226 -10367401 - Tigger3b DNA MER2_type -2457 571 334 1382 155 132 4 chr9 107495226 107495484 -10367143 + AluJo SINE Alu 1 291 -21 2320 110 138 34 chr9 107495484 107495682 -10366945 - Tigger3b DNA MER2_type -2694 334 59 2522 50 0 0 chr9 107495688 107495991 -10366636 + AluY SINE Alu 1 303 -8 1660 122 8 0 chr9 107497877 107498115 -10364512 + AluSg SINE Alu 53 292 -18 1120 210 105 4 chr9 107498416 107498673 -10363954 - AluJo SINE Alu -16 286 4 216 189 200 42 chr9 107499147 107499242 -10363385 - MER5B DNA MER1_type 0 178 69 1404 143 143 8 chr9 107499323 107499588 -10363039 + AluSg1 SINE Alu 1 301 -8 1215 131 0 5 chr9 107500226 107500417 -10362210 - AluSp SINE Alu -123 190 1 1783 159 27 0 chr9 107500422 107500723 -10361904 - AluJb SINE Alu -3 309 1 754 131 0 0 chr9 107500934 107501041 -10361586 - HY1 scRNA scRNA -1 111 5 1614 226 36 151 chr9 107501145 107501404 -10361223 - L1ME3A LINE L1 -254 5908 5621 1832 149 87 34 chr9 107501404 107501760 -10360867 + THE1C LTR MaLR 1 375 0 1614 226 36 151 chr9 107501760 107501938 -10360689 - L1ME3A LINE L1 -541 5621 5424 2300 70 0 7 chr9 107501938 107502238 -10360389 - AluY SINE Alu -13 298 1 1614 226 36 151 chr9 107502238 107502429 -10360198 - L1ME3A LINE L1 -738 5424 5373 2198 114 0 0 chr9 107502429 107502726 -10359901 - AluSx SINE Alu -8 304 8 1614 226 36 151 chr9 107502726 107502931 -10359696 - L1ME3A LINE L1 -789 5373 5146 416 281 0 6 chr9 107503167 107503300 -10359327 + MIR3 SINE MIR 56 187 -21 1677 119 68 22 chr9 107503392 107503556 -10359071 - AluJo SINE Alu -17 295 140 270 0 0 0 chr9 107503556 107503586 -10359041 + (TG)n Simple_repeat Simple_repeat 1 30 0 198 0 0 0 chr9 107503585 107503607 -10359020 + (GA)n Simple_repeat Simple_repeat 1 22 0 * 1677 119 68 22 chr9 107503586 107503720 -10358907 - AluJo SINE Alu -172 140 5 1930 132 37 3 chr9 107503731 107504027 -10358600 - AluSx SINE Alu -6 306 1 1156 182 14 18 chr9 107504032 107504252 -10358375 - L1MB8 LINE L1 -5 6173 5955 1210 170 0 5 chr9 107504276 107504482 -10358145 + AluJo SINE Alu 1 205 -107 425 298 113 22 chr9 107504555 107504657 -10357970 - L1MC4a LINE L1 -94 6027 5936 2202 87 28 0 chr9 107504657 107504946 -10357681 - AluSx SINE Alu -15 297 1 425 298 113 22 chr9 107504946 107505226 -10357401 - L1MC4a LINE L1 -185 5936 5616 2060 131 3 0 chr9 107505228 107505526 -10357101 - AluSq SINE Alu -14 299 1 2043 101 31 0 chr9 107505724 107506011 -10356616 + AluSx SINE Alu 2 297 -15 344 311 43 18 chr9 107506590 107506754 -10355873 - L1ME4a LINE L1 -221 5900 5733 188 171 24 24 chr9 107507113 107507154 -10355473 - L2 LINE L2 -7 3265 3225 * 200 238 143 0 chr9 107507126 107507189 -10355438 - MIR SINE MIR -14 248 177 320 288 110 7 chr9 107507933 107508079 -10354548 + MIR SINE MIR 29 189 -73 184 406 19 9 chr9 107508499 107508605 -10354022 + MIR SINE MIR 32 138 -124 337 227 13 13 chr9 107508792 107508867 -10353760 - L2 LINE L2 -8 3305 3231 263 299 0 0 chr9 107509340 107509417 -10353210 - L3 LINE CR1 -88 1489 1413 335 282 110 0 chr9 107509446 107509618 -10353009 + MIR3 SINE MIR 11 197 -65 193 275 163 0 chr9 107510301 107510381 -10352246 - L2 LINE L2 -38 3275 3183 366 213 92 35 chr9 107511021 107511162 -10351465 - MIR3 SINE MIR -27 181 33 184 294 137 0 chr9 107512036 107512138 -10350489 + MIR SINE MIR 34 149 -113 192 247 135 11 chr9 107512982 107513071 -10349556 - L2 LINE L2 -21 3251 3152 255 354 12 0 chr9 107513776 107513858 -10348769 + MIR SINE MIR 126 208 -54 553 200 0 0 chr9 107514348 107514453 -10348174 + MIR SINE MIR 47 151 -111 200 182 0 0 chr9 107514572 107514605 -10348022 + (CATA)n Simple_repeat Simple_repeat 4 36 0 1506 174 18 18 chr9 107514607 107514889 -10347738 - AluJo SINE Alu -30 282 1 440 323 164 4 chr9 107515060 107515329 -10347298 + L2 LINE L2 2990 3301 -12 1398 155 89 11 chr9 107515348 107515619 -10347008 + AluJb SINE Alu 11 302 -10 474 246 38 55 chr9 107515620 107515803 -10346824 - L1ME1 LINE L1 -5 6161 5982 2188 108 10 0 chr9 107515931 107516236 -10346391 - AluSg SINE Alu -2 308 1 576 220 73 7 chr9 107516671 107516821 -10345806 + MIR3 SINE MIR 10 169 -39 372 262 183 0 chr9 107517110 107517236 -10345391 - MIR SINE MIR -33 229 81 209 275 121 0 chr9 107517238 107517329 -10345298 + L2 LINE L2 3209 3310 -3 235 350 21 10 chr9 107517472 107517569 -10345058 + L3 LINE CR1 1386 1483 -94 328 300 62 57 chr9 107518526 107518736 -10343891 - L2 LINE L2 -158 3114 2904 2181 78 17 0 chr9 107518923 107519218 -10343409 + AluY SINE Alu 6 305 -6 1922 114 28 7 chr9 107519331 107519621 -10343006 + AluSx SINE Alu 1 296 -16 298 86 0 52 chr9 107519572 107519623 -10343004 + Alu SINE Alu 246 295 -5 2050 139 3 3 chr9 107519623 107519933 -10342694 + AluSx SINE Alu 3 312 0 787 183 35 6 chr9 107519951 107520120 -10342507 + LTR48B LTR ERV1 436 609 -35 776 175 57 53 chr9 107520431 107520561 -10342066 + MER96B DNA MER1_type? 171 304 -113 2211 93 14 0 chr9 107520561 107520851 -10341776 - AluSc SINE Alu -15 294 1 776 175 57 53 chr9 107520851 107520948 -10341679 + MER96B DNA MER1_type? 304 399 -18 212 151 19 57 chr9 107521607 107521660 -10340967 + MIR SINE MIR 98 148 -60 263 188 0 0 chr9 107522518 107522566 -10340061 - L2 LINE L2 0 3272 3225 279 271 75 30 chr9 107522705 107522838 -10339789 - L3 LINE CR1 -20 1557 1419 2206 113 0 3 chr9 107522972 107523274 -10339353 - AluSx SINE Alu -11 301 1 558 301 127 9 chr9 107523338 107523567 -10339060 - MIR SINE MIR 0 262 7 512 308 115 4 chr9 107523903 107524137 -10338490 + MIR SINE MIR 3 262 0 2304 84 10 0 chr9 107524589 107524897 -10337730 - AluY SINE Alu 0 311 1 205 270 130 20 chr9 107525626 107525726 -10336901 - L2 LINE L2 -5 3267 3157 218 277 0 0 chr9 107526214 107526261 -10336366 - L2 LINE L2 -79 3193 3147 234 257 27 14 chr9 107526717 107526791 -10335836 + MIR3 SINE MIR 130 204 -4 537 279 23 81 chr9 107527630 107527888 -10334739 + MIR SINE MIR 19 261 -1 308 299 112 22 chr9 107528696 107528830 -10333797 - MER91A DNA MER1_type -16 180 35 2113 101 44 0 chr9 107529152 107529448 -10333179 - AluSx SINE Alu -3 309 1 219 320 109 8 chr9 107529680 107529808 -10332819 + MIR SINE MIR 74 214 -48 710 163 81 0 chr9 107529894 107530017 -10332610 - FLAM_C SINE Alu 0 133 1 401 303 29 23 chr9 107530406 107530459 -10332168 - L1ME1 LINE L1 -5 6161 6110 2162 124 0 0 chr9 107530459 107530757 -10331870 + AluSq SINE Alu 1 298 -15 401 303 29 23 chr9 107530757 107530878 -10331749 - L1ME1 LINE L1 -56 6110 5986 202 73 0 194 chr9 107530939 107531063 -10331564 + (TCCC)n Simple_repeat Simple_repeat 1 100 0 188 43 0 149 chr9 107531097 107531144 -10331483 + (TCCC)n Simple_repeat Simple_repeat 1 40 0 437 179 34 10 chr9 107531168 107531300 -10331327 - L1ME2 LINE L1 -158 6012 5880 2062 126 20 0 chr9 107531319 107531620 -10331007 + AluSx SINE Alu 1 307 -5 350 232 21 21 chr9 107531665 107531760 -10330867 - L1ME3 LINE L1 -49 6113 6019 1626 141 15 110 chr9 107531859 107532186 -10330441 - AluJo SINE Alu -6 296 1 2242 107 0 0 chr9 107532264 107532564 -10330063 + AluSq SINE Alu 1 300 -13 2071 181 24 58 chr9 107532568 107533119 -10329508 - L1ME3 LINE L1 -259 5905 5374 2145 96 0 33 chr9 107533145 107533447 -10329180 + AluY SINE Alu 1 292 -19 1211 143 65 14 chr9 107533528 107533744 -10328883 + AluJo SINE Alu 77 303 -9 2218 106 3 0 chr9 107533772 107534073 -10328554 + AluSg SINE Alu 1 302 -8 892 123 0 22 chr9 107534295 107534433 -10328194 - FLAM_C SINE Alu -8 135 1 443 298 152 0 chr9 107534445 107534636 -10327991 - MIR SINE MIR -14 248 29 983 157 0 6 chr9 107534689 107534848 -10327779 - FRAM SINE Alu -8 168 11 1978 130 0 29 chr9 107535367 107535542 -10327085 - AluJo SINE Alu -6 306 128 216 0 0 0 chr9 107535542 107535566 -10327061 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2302 56 0 3 chr9 107535566 107535850 -10326777 - AluY SINE Alu -28 283 1 1915 136 42 0 chr9 107535850 107536137 -10326490 - AluSx SINE Alu -13 299 1 1978 130 0 29 chr9 107536137 107536274 -10326353 - AluJo SINE Alu -181 131 1 1694 130 40 47 chr9 107536399 107536699 -10325928 - AluSx SINE Alu -14 298 1 296 255 167 10 chr9 107537405 107537507 -10325120 + MIR3 SINE MIR 65 182 -26 2081 107 0 29 chr9 107537507 107537817 -10324810 - AluSx SINE Alu 0 312 12 1940 139 7 3 chr9 107537834 107538129 -10324498 - AluJb SINE Alu -16 296 1 310 215 89 0 chr9 107538266 107538345 -10324282 + MIR SINE MIR 94 179 -83 478 139 0 0 chr9 107538552 107538624 -10324003 - AluJ/FLAM SINE Alu -240 72 1 180 176 27 27 chr9 107539281 107539355 -10323272 + (TAA)n Simple_repeat Simple_repeat 2 75 0 2087 93 0 4 chr9 107539389 107539668 -10322959 - AluSx SINE Alu -34 278 1 338 357 50 0 chr9 107539719 107539859 -10322768 - MIR SINE MIR -93 169 23 318 237 175 0 chr9 107541003 107541100 -10321527 - MIR SINE MIR -92 170 57 255 346 29 0 chr9 107541227 107541331 -10321296 - MIR3 SINE MIR -11 197 91 233 328 94 8 chr9 107541524 107541652 -10320975 + MIR SINE MIR 47 152 -56 501 251 80 75 chr9 107542568 107542680 -10319947 - MER5A DNA MER1_type -1 188 73 2295 92 0 0 chr9 107542680 107542986 -10319641 - AluSc SINE Alu -1 308 3 501 251 80 75 chr9 107542986 107543060 -10319567 - MER5A DNA MER1_type -116 73 1 316 339 16 8 chr9 107543253 107543443 -10319184 + MIR SINE MIR 2 250 -12 259 278 189 0 chr9 107543507 107543597 -10319030 - MIR SINE MIR -19 243 137 289 312 24 48 chr9 107543630 107543755 -10318872 - MIR SINE MIR -108 154 33 210 245 38 0 chr9 107543799 107543852 -10318775 + CT-rich Low_complexity Low_complexity 1 55 0 282 346 46 26 chr9 107544519 107544672 -10317955 + MIR SINE MIR 28 183 -79 364 290 148 6 chr9 107545654 107545816 -10316811 + MIR SINE MIR 1 185 -77 297 0 0 0 chr9 107545843 107545858 -10316769 + (TA)n Simple_repeat Simple_repeat 1 48 0 297 0 0 0 chr9 107545858 107545891 -10316736 + (TA)n Simple_repeat Simple_repeat 2 34 0 276 265 36 0 chr9 107545923 107546006 -10316621 + MIR3 SINE MIR 71 156 -52 458 245 77 155 chr9 107546016 107546559 -10316068 - L2 LINE L2 0 3272 2777 216 347 83 25 chr9 107547136 107547257 -10315370 + MIR SINE MIR 118 245 -17 410 248 172 13 chr9 107547775 107547932 -10314695 + MIR SINE MIR 33 214 -48 934 163 74 5 chr9 107547946 107548161 -10314466 - MLT1B LTR MaLR -4 386 157 1910 89 107 4 chr9 107548175 107548455 -10314172 - AluSc SINE Alu 0 309 1 1253 88 15 10 chr9 107548562 107548767 -10313860 - MER41B LTR ERV1 -429 206 1 2604 83 28 148 chr9 107548774 107549349 -10313278 - L1MA2 LINE L1 -259 6046 5541 1357 133 10 100 chr9 107549349 107549533 -10313094 - MER4A LTR ERV1 0 664 465 2150 110 3 3 chr9 107549533 107549833 -10312794 + AluSx SINE Alu 1 300 -12 1357 133 10 100 chr9 107549833 107550032 -10312595 - MER4A LTR ERV1 -199 465 257 495 165 21 10 chr9 107550028 107550125 -10312502 - MER4A LTR ERV1 -566 98 1 * 1552 94 16 88 chr9 107550125 107550480 -10312147 - L1M1 LINE L1 -747 5399 5214 21 0 0 0 chr9 107550602 107550623 -10312004 + AT_rich Low_complexity Low_complexity 1 21 0 855 145 8 8 chr9 107550623 107550754 -10311873 + FLAM_C SINE Alu 1 131 -2 2122 107 0 10 chr9 107550773 107551063 -10311564 + AluSx SINE Alu 1 287 -25 981 176 6 0 chr9 107551085 107551250 -10311377 + L1PA16 LINE L1 5998 6163 -3 810 171 0 0 chr9 107551261 107551384 -10311243 + FRAM SINE Alu 38 160 -16 2388 66 0 0 chr9 107551386 107551702 -10310925 + AluSg SINE Alu 1 316 0 185 62 0 31 chr9 107554582 107554614 -10308013 + (TGAG)n Simple_repeat Simple_repeat 2 32 0 279 211 80 0 chr9 107555527 107555612 -10307015 - MIR SINE MIR -65 143 62 272 357 127 0 chr9 107555806 107555932 -10306695 - MIR SINE MIR -14 248 107 2207 100 0 13 chr9 107557032 107557342 -10305285 + AluSc SINE Alu 1 306 -3 261 294 35 12 chr9 107557409 107557494 -10305133 - MIR SINE MIR -71 191 105 200 324 0 14 chr9 107558010 107558081 -10304546 - L2 LINE L2 -64 3208 3139 476 209 8 16 chr9 107558345 107558474 -10304153 + MER2 DNA MER2_type 193 320 -25 2519 53 0 6 chr9 107558549 107558867 -10303760 + AluYb8 SINE Alu 1 316 -2 1078 148 0 0 chr9 107558868 107559064 -10303563 + AluSg/x SINE Alu 121 316 0 655 264 137 13 chr9 107560290 107560517 -10302110 - MIR SINE MIR -6 256 2 470 348 16 11 chr9 107561576 107561763 -10300864 - MIR SINE MIR -12 250 63 798 172 7 28 chr9 107562151 107562296 -10300331 - AluJo SINE Alu -170 142 1 208 345 131 16 chr9 107562320 107562511 -10300116 - L2 LINE L2 -84 3188 2976 753 155 0 0 chr9 107562530 107562678 -10299949 + (TG)n Simple_repeat Simple_repeat 2 149 0 2259 111 0 13 chr9 107563204 107563383 -10299244 - AluSx SINE Alu 0 312 137 2161 99 17 0 chr9 107563383 107563676 -10298951 - AluSq SINE Alu -15 298 1 2259 111 0 13 chr9 107563676 107563812 -10298815 - AluSx SINE Alu -175 137 1 681 169 105 8 chr9 107563812 107563936 -10298691 - AluJo SINE Alu -176 136 1 409 252 54 27 chr9 107563945 107564092 -10298535 - L1MC4 LINE L1 -319 7723 7573 1163 172 38 10 chr9 107564099 107564308 -10298319 + MER20 DNA MER1_type 2 216 -3 1385 270 75 9 chr9 107564313 107564700 -10297927 + L2 LINE L2 2686 3136 -177 2001 108 0 65 chr9 107564700 107565023 -10297604 - AluSx SINE Alu -10 302 1 1385 270 75 9 chr9 107565023 107565211 -10297416 + L2 LINE L2 3136 3310 -3 691 288 66 4 chr9 107565213 107565456 -10297171 + MIR SINE MIR 5 262 0 414 143 10 31 chr9 107565664 107565762 -10296865 + GA-rich Low_complexity Low_complexity 4 99 0 776 175 57 53 chr9 107565876 107565973 -10296654 - MER96B DNA MER1_type? -18 399 304 2211 93 14 0 chr9 107565973 107566263 -10296364 + AluSc SINE Alu 1 294 -15 776 175 57 53 chr9 107566263 107566393 -10296234 - MER96B DNA MER1_type? -113 304 171 729 183 35 6 chr9 107566704 107566873 -10295754 - LTR48B LTR ERV1 -35 609 436 2050 139 3 3 chr9 107566891 107567201 -10295426 - AluSx SINE Alu 0 312 3 1953 114 28 7 chr9 107567203 107567493 -10295134 - AluSx SINE Alu -16 296 1 267 284 19 33 chr9 107567496 107567606 -10295021 - L1M4 LINE L1 -2982 3164 3057 2169 82 41 0 chr9 107567606 107567899 -10294728 - AluY SINE Alu -6 305 1 267 284 19 33 chr9 107567899 107567999 -10294628 - L1M4 LINE L1 -3089 3057 2957 2215 97 10 13 chr9 107568007 107568318 -10294309 - AluSg SINE Alu 0 310 1 2363 95 0 0 chr9 107568566 107568870 -10293757 + AluSx SINE Alu 1 304 -8 1775 156 16 25 chr9 107569182 107569497 -10293130 - AluJb SINE Alu 0 312 1 2145 112 0 13 chr9 107569657 107569960 -10292667 - AluSq SINE Alu -14 299 1 1604 128 9 84 chr9 107569960 107570280 -10292347 - AluJo SINE Alu -16 296 1 2378 84 3 14 chr9 107570532 107570829 -10291798 + AluSp SINE Alu 1 294 -19 231 246 55 36 chr9 107571151 107571261 -10291366 - MIR SINE MIR -73 135 24 213 342 0 0 chr9 107571324 107571400 -10291227 + G-rich Low_complexity Low_complexity 1 76 0 347 200 17 0 chr9 107571473 107571533 -10291094 - AluJ/FLAM SINE Alu -231 71 11 308 137 0 0 chr9 107571525 107571576 -10291051 + MER69 DNA AcHobo 2473 2523 -3 * 297 149 45 30 chr9 107571764 107571792 -10290835 - MER69A DNA AcHobo -2396 130 104 1988 116 18 0 chr9 107571792 107572098 -10290529 + AluSx SINE Alu 1 311 0 297 149 45 30 chr9 107572098 107572135 -10290492 - MER69A DNA AcHobo -2422 104 63 21 0 0 0 chr9 107572337 107572358 -10290269 + AT_rich Low_complexity Low_complexity 1 21 0 2304 102 3 0 chr9 107572359 107572654 -10289973 + AluSx SINE Alu 1 296 -16 2041 131 7 0 chr9 107572757 107573061 -10289566 - AluSx SINE Alu 0 306 1 1864 141 10 46 chr9 107573078 107573384 -10289243 - AluJo SINE Alu -5 307 13 2087 134 0 7 chr9 107573407 107573718 -10288909 - AluSx SINE Alu 0 312 1 400 261 76 6 chr9 107573729 107573859 -10288768 + MIR SINE MIR 111 250 -12 860 172 88 88 chr9 107573969 107574005 -10288622 - L1ME3 LINE L1 -6 6156 6121 2425 74 3 3 chr9 107574005 107574301 -10288326 - AluSp SINE Alu -17 296 1 860 172 88 88 chr9 107574301 107574537 -10288090 - L1ME3 LINE L1 -40 6122 5884 954 148 6 6 chr9 107574721 107574883 -10287744 + FAM SINE Alu 1 162 -13 615 62 0 0 chr9 107574883 107574963 -10287664 + (TA)n Simple_repeat Simple_repeat 2 81 0 2054 99 20 41 chr9 107575018 107575339 -10287288 - AluSc SINE Alu 0 309 1 398 294 117 41 chr9 107575518 107575834 -10286793 + L2 LINE L2 2904 3243 -29 2428 78 0 3 chr9 107576391 107576687 -10285940 - AluSc SINE Alu -14 295 1 1849 119 0 0 chr9 107576687 107576939 -10285688 - AluSx SINE Alu -14 298 47 535 138 0 0 chr9 107576955 107577042 -10285585 + AluSc SINE Alu 222 308 -1 537 75 38 12 chr9 107577100 107577180 -10285447 - 7SLRNA srpRNA srpRNA -3 317 236 275 128 0 0 chr9 107577180 107577219 -10285408 - AluSx SINE Alu -262 39 1 713 182 128 0 chr9 107577319 107577467 -10285160 + MIR SINE MIR 38 204 -58 1955 156 0 0 chr9 107577505 107577787 -10284840 - AluJo SINE Alu -30 282 1 536 254 96 0 chr9 107577832 107578009 -10284618 + L2 LINE L2 3113 3306 -7 307 213 138 25 chr9 107578038 107578118 -10284509 - MER119 DNA MER1_type 0 583 495 889 143 0 0 chr9 107578121 107578254 -10284373 + FLAM_C SINE Alu 1 133 0 1079 157 46 15 chr9 107578285 107578482 -10284145 + MSTD LTR MaLR 194 396 0 483 176 0 0 chr9 107578563 107578654 -10283973 + CT-rich Low_complexity Low_complexity 1 91 0 983 188 6 0 chr9 107578654 107578814 -10283813 - AluJo SINE Alu -25 287 127 2376 110 0 0 chr9 107578816 107579124 -10283503 - AluSc SINE Alu -1 308 1 342 0 0 0 chr9 107579124 107579162 -10283465 + (T)n Simple_repeat Simple_repeat 1 38 0 925 174 0 0 chr9 107579185 107579323 -10283304 - AluJo SINE Alu -174 138 1 2001 161 0 10 chr9 107579364 107579675 -10282952 - AluJb SINE Alu -2 310 3 2072 147 18 28 chr9 107579695 107580079 -10282548 + MER41D LTR ERV1 1 435 -122 2221 133 0 6 chr9 107580079 107580394 -10282233 - AluSq SINE Alu 0 313 1 2072 147 18 28 chr9 107580394 107580516 -10282111 + MER41D LTR ERV1 435 557 0 573 282 18 18 chr9 107580516 107580686 -10281941 - MER119 DNA MER1_type -350 233 64 2368 106 3 3 chr9 107580688 107581000 -10281627 + AluSq SINE Alu 1 312 -1 27 0 0 0 chr9 107581001 107581028 -10281599 + AT_rich Low_complexity Low_complexity 1 27 0 2027 164 0 13 chr9 107581028 107581164 -10281463 + AluJo SINE Alu 1 137 -175 2379 100 0 0 chr9 107581164 107581455 -10281172 + AluSg SINE Alu 1 291 -19 2027 164 0 13 chr9 107581455 107581628 -10280999 + AluJo SINE Alu 137 306 -6 233 372 0 0 chr9 107581628 107581706 -10280921 - MER119 DNA MER1_type -505 78 1 21 0 0 0 chr9 107581728 107581749 -10280878 + AT_rich Low_complexity Low_complexity 1 21 0 1171 123 0 39 chr9 107581761 107581921 -10280706 - AluSg/x SINE Alu -21 291 126 207 0 0 0 chr9 107581921 107581944 -10280683 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2096 127 7 0 chr9 107581944 107582227 -10280400 - AluSx SINE Alu -27 285 1 1171 123 0 39 chr9 107582227 107582244 -10280383 - AluSg/x SINE Alu -184 128 120 2366 107 0 0 chr9 107582283 107582582 -10280045 + AluSx SINE Alu 8 306 -6 1394 132 9 26 chr9 107582756 107582984 -10279643 + AluJb SINE Alu 89 312 0 206 246 191 32 chr9 107583357 107583483 -10279144 - L3 LINE CR1 -206 1371 1226 1174 126 0 0 chr9 107583694 107583853 -10278774 - AluSp SINE Alu -18 295 137 272 303 70 0 chr9 107584078 107584220 -10278407 - L1MC4a LINE L1 -1902 5906 5755 181 237 0 0 chr9 107584399 107584437 -10278190 - L3b LINE CR1 -11 1572 1535 786 286 61 0 chr9 107584684 107584929 -10277698 + MIR SINE MIR 3 262 0 390 330 69 11 chr9 107585061 107585249 -10277378 - L2 LINE L2 -2 3311 3113 2444 82 13 0 chr9 107585392 107585695 -10276932 + AluSg SINE Alu 4 310 0 2122 129 14 0 chr9 107585714 107586008 -10276619 + AluSq SINE Alu 1 298 -15 378 351 6 6 chr9 107586059 107586224 -10276403 - MIR SINE MIR -3 259 95 2889 191 29 48 chr9 107586354 107586512 -10276115 + L1MB8 LINE L1 5505 5664 -514 2174 137 0 13 chr9 107586512 107586827 -10275800 + AluSx SINE Alu 1 311 -1 2889 191 29 48 chr9 107586827 107587054 -10275573 + L1MB8 LINE L1 5664 5894 -284 2350 80 3 0 chr9 107587054 107587341 -10275286 + AluY SINE Alu 1 288 -23 2889 191 29 48 chr9 107587341 107587635 -10274992 + L1MB8 LINE L1 5894 6172 -6 663 139 87 0 chr9 107587690 107587805 -10274822 + FLAM_C SINE Alu 1 125 -8 2382 77 0 3 chr9 107588513 107588823 -10273804 + AluSp SINE Alu 1 309 0 1586 126 0 5 chr9 107588832 107589046 -10273581 + AluSx SINE Alu 1 213 -99 671 97 58 0 chr9 107589092 107589195 -10273432 + AluSp/q SINE Alu 188 296 -17 2438 100 0 3 chr9 107589636 107589947 -10272680 + AluSx SINE Alu 1 310 -2 2267 92 3 0 chr9 107590065 107590388 -10272239 - AluSx SINE Alu 0 324 1 2354 94 0 16 chr9 107590700 107591007 -10271620 + AluSq SINE Alu 1 302 -11 839 175 139 10 chr9 107591019 107591213 -10271414 + MER20 DNA MER1_type 1 219 0 732 195 8 0 chr9 107591294 107591422 -10271205 - FLAM_A SINE Alu -4 129 1 2410 94 0 0 chr9 107592761 107593058 -10269569 + AluSp SINE Alu 1 297 -16 668 243 0 0 chr9 107593182 107593322 -10269305 + HAL1 LINE L1 170 309 -2198 2477 84 0 3 chr9 107593342 107593650 -10268977 + AluY SINE Alu 1 307 -4 611 277 28 17 chr9 107593665 107593842 -10268785 + HAL1 LINE L1 568 746 -1761 2200 129 0 3 chr9 107593874 107594177 -10268450 - AluSx SINE Alu -10 302 1 239 329 14 0 chr9 107594942 107595015 -10267612 + L3 LINE CR1 1503 1576 -1 1681 146 86 23 chr9 107595041 107595391 -10267236 - THE1C LTR MaLR 0 375 4 1772 163 14 0 chr9 107595393 107595549 -10267078 - AluJo SINE Alu -31 281 118 198 0 0 0 chr9 107595549 107595571 -10267056 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 1772 163 14 0 chr9 107595571 107595691 -10266936 - AluJo SINE Alu -194 118 1 376 343 90 14 chr9 107596236 107596735 -10265892 + L2 LINE L2 2360 2896 -418 261 258 52 31 chr9 107596928 107597025 -10265602 + L2 LINE L2 3173 3271 -1 1558 145 0 122 chr9 107597364 107597708 -10264919 + AluSx SINE Alu 1 302 0 1815 195 0 19 chr9 107597766 107597903 -10264724 + AluJb SINE Alu 1 139 -173 240 35 0 0 chr9 107597903 107597932 -10264695 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 1815 195 0 19 chr9 107597932 107598112 -10264515 + AluJb SINE Alu 139 312 0 1476 163 101 8 chr9 107598136 107598394 -10264233 + AluJo SINE Alu 1 282 -30 809 161 101 42 chr9 107598944 107599112 -10263515 + FRAM SINE Alu 1 176 0 2274 129 3 0 chr9 107599148 107599459 -10263168 + AluSx SINE Alu 1 312 0 270 275 33 17 chr9 107599477 107599597 -10263030 + L1M4 LINE L1 2963 3084 -3062 2148 121 0 7 chr9 107599633 107599923 -10262704 + AluSc SINE Alu 5 292 -17 230 125 0 42 chr9 107600036 107600084 -10262543 + (TTTG)n Simple_repeat Simple_repeat 1 46 0 323 371 35 45 chr9 107600190 107600392 -10262235 + L1MEd LINE L1 123 322 -5797 361 356 88 42 chr9 107600502 107600741 -10261886 + L1MEd LINE L1 386 635 -5484 250 293 9 17 chr9 107600751 107600867 -10261760 + L1MEd LINE L1 2249 2363 -3766 1474 234 25 0 chr9 107600867 107600987 -10261640 + AluJo SINE Alu 1 117 -195 543 31 0 0 chr9 107600987 107601052 -10261575 + (CTA)n Simple_repeat Simple_repeat 1 65 0 1474 234 25 0 chr9 107601052 107601217 -10261410 + AluJo SINE Alu 117 293 -19 1426 299 105 14 chr9 107601219 107601957 -10260670 - L2 LINE L2 -167 3146 2342 588 157 47 12 chr9 107602352 107602524 -10260103 + CT-rich Low_complexity Low_complexity 2 179 0 235 302 0 0 chr9 107602526 107602579 -10260048 + polypyrimidine Low_complexity Low_complexity 4 56 0 1167 113 68 17 chr9 107603283 107603482 -10259145 - AluSg/x SINE Alu 0 304 97 356 158 3 3 chr9 107603486 107603562 -10259065 - AluJ/FLAM SINE Alu -243 59 2 332 246 127 25 chr9 107603586 107603789 -10258838 - MIR SINE MIR -18 244 24 2219 114 0 38 chr9 107604257 107604573 -10258054 + AluSx SINE Alu 1 304 -8 262 279 23 0 chr9 107604940 107605026 -10257601 + MIR SINE MIR 48 135 -73 230 219 0 0 chr9 107606033 107606074 -10256553 + polypurine Low_complexity Low_complexity 2 42 0 1727 128 60 36 chr9 107606585 107606866 -10255761 + AluSx SINE Alu 4 291 -21 2722 43 0 0 chr9 107606866 107607170 -10255457 + AluY SINE Alu 1 304 -7 2291 112 0 0 chr9 107607189 107607483 -10255144 - AluSx SINE Alu -18 294 1 2391 112 0 0 chr9 107608089 107608401 -10254226 + AluSx SINE Alu 1 312 0 221 216 0 0 chr9 107609013 107609050 -10253577 + polypurine Low_complexity Low_complexity 2 38 0 1511 112 138 8 chr9 107609348 107609608 -10253019 - AluSx SINE Alu -8 294 1 709 204 78 57 chr9 107609644 107609889 -10252738 - L1ME3A LINE L1 -5 6165 5916 2070 158 0 10 chr9 107610096 107610407 -10252220 + AluJb SINE Alu 1 308 -4 333 296 9 9 chr9 107610631 107610746 -10251881 + MIR SINE MIR 29 143 -119 226 282 27 27 chr9 107614546 107614666 -10247961 - MIR SINE MIR -62 146 40 399 280 45 8 chr9 107615260 107615392 -10247235 - MIR SINE MIR -55 153 17 184 182 45 0 chr9 107615629 107615673 -10246954 - MIR SINE MIR -63 199 154 459 255 85 28 chr9 107617475 107617616 -10245011 - MIR SINE MIR -88 174 26 279 0 0 0 chr9 107617842 107617873 -10244754 + (CA)n Simple_repeat Simple_repeat 1 31 0 1101 82 0 2 chr9 107617922 107618117 -10244510 + AluSq SINE Alu 2 229 -84 751 139 15 46 chr9 107618136 107618345 -10244282 + GA-rich Low_complexity Low_complexity 1 215 -333 2642 68 0 0 chr9 107618345 107618653 -10243974 + AluSc SINE Alu 1 308 -1 751 139 15 46 chr9 107618653 107618702 -10243925 + GA-rich Low_complexity Low_complexity 215 548 0 205 278 183 8 chr9 107618779 107618905 -10243722 + MIR3 SINE MIR 60 207 -1 381 295 94 13 chr9 107618966 107619101 -10243526 + L2 LINE L2 3111 3260 -12 2302 121 93 29 chr9 107619101 107619187 -10243440 + MER83 LTR ERV1 1 80 -368 2656 62 0 0 chr9 107619187 107619491 -10243136 - AluY SINE Alu -7 304 1 2302 121 93 29 chr9 107619491 107619825 -10242802 + MER83 LTR ERV1 80 448 0 381 295 94 13 chr9 107619825 107619838 -10242789 + L2 LINE L2 3260 3271 -1 337 282 83 32 chr9 107620667 107620811 -10241816 + L1ME4a LINE L1 5955 6109 -12 2387 91 6 6 chr9 107620811 107621122 -10241505 + AluSx SINE Alu 1 309 -3 337 282 83 32 chr9 107621122 107621133 -10241494 + L1ME4a LINE L1 6109 6118 -3 411 239 15 46 chr9 107622124 107622254 -10240373 - MIR SINE MIR -118 144 19 2239 107 0 3 chr9 107622254 107622564 -10240063 - AluY SINE Alu -2 309 1 631 318 74 5 chr9 107622600 107622812 -10239815 + MIR SINE MIR 31 258 0 2341 78 10 3 chr9 107622812 107623120 -10239507 - AluSg SINE Alu 0 310 1 275 256 0 0 chr9 107623152 107623218 -10239409 - MIR SINE MIR -64 144 87 2289 73 0 3 chr9 107623793 107624120 -10238507 - AluSx SINE Alu 0 312 1 382 261 58 37 chr9 107624644 107624794 -10237833 + MIR SINE MIR 39 192 -16 2325 97 0 0 chr9 107624804 107625115 -10237512 + AluSx SINE Alu 1 311 -1 254 268 206 0 chr9 107625150 107625247 -10237380 - MIR SINE MIR -69 139 23 2232 77 17 0 chr9 107625656 107625953 -10236674 - AluSq SINE Alu -11 302 1 319 294 0 20 chr9 107625953 107626055 -10236572 - MIR SINE MIR -68 140 41 1329 154 23 114 chr9 107627035 107627378 -10235249 - AluJo SINE Alu 0 312 1 767 257 64 0 chr9 107627477 107627679 -10234948 - MIR SINE MIR -9 253 39 447 119 0 0 chr9 107628031 107628098 -10234529 + L1MC1 LINE L1 6267 6333 0 1142 59 0 0 chr9 107628104 107628239 -10234388 + AluSq/x SINE Alu 1 135 -177 2025 104 24 0 chr9 107628239 107628528 -10234099 + AluSq SINE Alu 1 296 -17 333 319 110 37 chr9 107628939 107629102 -10233525 - MIR3 SINE MIR -16 192 18 2018 123 3 22 chr9 107629105 107629423 -10233204 - AluSx SINE Alu 0 312 1 371 274 11 0 chr9 107629624 107629719 -10232908 - MER91A DNA MER1_type -11 185 90 392 366 149 9 chr9 107630048 107630269 -10232358 + MIR SINE MIR 10 261 -1 398 256 47 23 chr9 107630514 107630643 -10231984 - MIR3 SINE MIR -68 140 9 332 313 108 73 chr9 107631613 107631724 -10230903 + L2 LINE L2 2888 2994 -278 1920 114 33 0 chr9 107631724 107632038 -10230589 - AluSx SINE Alu 0 323 1 332 313 108 73 chr9 107632038 107632296 -10230331 + L2 LINE L2 2994 3271 -1 538 258 216 6 chr9 107632480 107632647 -10229980 - MIR SINE MIR -33 229 28 232 282 50 108 chr9 107633053 107633312 -10229315 - L2 LINE L2 -4 3268 3025 328 304 36 18 chr9 107633824 107633936 -10228691 + MIR SINE MIR 105 218 -44 232 309 162 40 chr9 107634371 107634649 -10227978 - L2 LINE L2 -123 3149 2838 189 305 151 29 chr9 107634862 107635101 -10227526 - L2 LINE L2 -810 2504 2237 358 260 175 19 chr9 107635417 107635571 -10227056 + MIR3 SINE MIR 6 183 -25 213 195 0 0 chr9 107636521 107636562 -10226065 + (CCCGG)n Simple_repeat Simple_repeat 5 45 0 29 78 0 0 chr9 107636594 107636658 -10225969 + GC_rich Low_complexity Low_complexity 1 64 0 347 350 124 8 chr9 107637335 107637569 -10225058 + MIR SINE MIR 2 262 0 2115 125 3 7 chr9 107637602 107637906 -10224721 + AluSx SINE Alu 1 303 -9 253 228 29 77 chr9 107637971 107638069 -10224558 + MIR SINE MIR 37 140 -68 2164 65 45 3 chr9 107638224 107638515 -10224112 - AluY SINE Alu -8 303 1 1564 136 77 45 chr9 107638517 107638804 -10223823 - AluSq SINE Alu -17 296 1 1298 152 21 130 chr9 107638856 107639186 -10223441 - AluJb SINE Alu -16 296 3 243 0 0 0 chr9 107639186 107639213 -10223414 + (ATG)n Simple_repeat Simple_repeat 1 27 0 1994 113 0 24 chr9 107639213 107639537 -10223090 - AluSx SINE Alu 0 317 1 663 93 22 158 chr9 107639540 107639679 -10222948 - AluSq/x SINE Alu -179 133 14 850 156 7 14 chr9 107639706 107639847 -10222780 - AluJo SINE Alu -170 142 3 204 277 0 0 chr9 107640341 107640388 -10222239 + L2 LINE L2 3012 3058 -214 232 339 77 0 chr9 107640614 107640744 -10221883 - MIR SINE MIR -70 192 53 2166 116 0 0 chr9 107640791 107641092 -10221535 - AluSx SINE Alu -11 301 1 1086 175 29 79 chr9 107641144 107641278 -10221349 + AluJo SINE Alu 2 120 -192 2409 71 0 0 chr9 107641278 107641574 -10221053 + AluY SINE Alu 1 296 -15 1086 175 29 79 chr9 107641574 107641679 -10220948 + AluJo SINE Alu 120 229 -83 26 0 0 0 chr9 107641710 107641736 -10220891 + AT_rich Low_complexity Low_complexity 1 26 0 181 360 20 10 chr9 107641795 107641895 -10220732 + L2 LINE L2 3146 3246 -26 274 136 0 0 chr9 107641974 107642018 -10220609 - MADE1 DNA Mariner 0 80 37 1185 64 0 53 chr9 107642021 107642192 -10220435 + L1PA7 LINE L1 5993 6154 0 347 285 30 110 chr9 107642199 107642399 -10220228 + MIR SINE MIR 79 262 0 1980 88 0 8 chr9 107642455 107642717 -10219910 - AluSx SINE Alu -52 260 1 464 354 12 0 chr9 107643374 107643538 -10219089 + MIR SINE MIR 60 225 -37 336 259 96 35 chr9 107643535 107643732 -10218895 + L2 LINE L2 1989 2197 -1117 * 892 308 125 13 chr9 107643879 107644431 -10218196 + L2 LINE L2 2187 2800 -514 919 255 114 42 chr9 107644531 107645004 -10217623 + L2 LINE L2 2794 3304 -9 636 160 0 0 chr9 107645005 107645099 -10217528 + AluSq SINE Alu 129 222 -91 192 212 0 0 chr9 107645213 107645246 -10217381 + MIR SINE MIR 117 149 -59 699 252 219 11 chr9 107645892 107646266 -10216361 + L2 LINE L2 2567 3001 -312 2095 92 0 11 chr9 107646273 107646587 -10216040 - AluSx SINE Alu 0 311 1 825 196 13 0 chr9 107646593 107646746 -10215881 - AluJb SINE Alu -18 294 140 582 285 142 7 chr9 107646750 107647024 -10215603 + L2 LINE L2 3003 3313 0 443 280 28 62 chr9 107647029 107647308 -10215319 + L2 LINE L2 2785 3051 -221 314 244 37 0 chr9 107647928 107648010 -10214617 + MIR SINE MIR 108 192 -70 2110 117 3 0 chr9 107648119 107648445 -10214182 - AluSx SINE Alu 0 312 1 271 250 250 10 chr9 107648920 107649020 -10213607 - MIR SINE MIR -62 146 23 243 241 69 0 chr9 107649210 107649268 -10213359 + MIR SINE MIR 84 145 -63 607 305 45 0 chr9 107649277 107649454 -10213173 - MIR SINE MIR -14 248 64 773 89 0 0 chr9 107649943 107650044 -10212583 - AluS SINE Alu -212 101 1 630 107 0 121 chr9 107650046 107650186 -10212441 + FRAM SINE Alu 1 40 0 2160 122 3 0 chr9 107650469 107650772 -10211855 + AluSx SINE Alu 1 304 -8 732 306 24 65 chr9 107650834 107651298 -10211329 - L1MC4a LINE L1 -1765 6043 5599 2265 98 0 0 chr9 107651301 107651598 -10211029 - AluSx SINE Alu -15 297 1 394 284 251 0 chr9 107651622 107651805 -10210822 - MIR SINE MIR -25 237 9 313 310 190 0 chr9 107652102 107652260 -10210367 - L1MC4a LINE L1 -713 5457 5270 1162 158 29 75 chr9 107652261 107652395 -10210232 + AluJb SINE Alu 1 121 -191 1213 217 50 0 chr9 107652395 107652453 -10210174 + AluY SINE Alu 2 56 -255 1682 147 0 0 chr9 107652453 107652705 -10209922 - AluSg SINE Alu -13 297 46 1213 217 50 0 chr9 107652705 107652927 -10209700 + AluY SINE Alu 56 296 -15 1162 158 29 75 chr9 107652927 107653032 -10209595 + AluJb SINE Alu 121 229 -83 26 0 0 0 chr9 107653063 107653089 -10209538 + AT_rich Low_complexity Low_complexity 1 26 0 181 360 20 10 chr9 107653148 107653248 -10209379 + L2 LINE L2 3146 3246 -26 274 136 0 0 chr9 107653327 107653371 -10209256 - MADE1 DNA Mariner 0 80 37 1185 64 0 53 chr9 107653374 107653545 -10209082 + L1PA7 LINE L1 5993 6154 0 347 285 30 110 chr9 107653552 107653752 -10208875 + MIR SINE MIR 79 262 0 1980 88 0 8 chr9 107653808 107654070 -10208557 - AluSx SINE Alu -52 260 1 464 354 12 0 chr9 107654727 107654891 -10207736 + MIR SINE MIR 60 225 -37 369 274 91 30 chr9 107654888 107655085 -10207542 + L2 LINE L2 1989 2197 -1117 * 730 305 106 19 chr9 107655363 107655845 -10206782 + L2 LINE L2 2277 2800 -514 919 255 114 42 chr9 107655945 107656418 -10206209 + L2 LINE L2 2794 3304 -9 636 160 0 0 chr9 107656419 107656513 -10206114 + AluSq SINE Alu 129 222 -91 192 212 0 0 chr9 107656627 107656660 -10205967 + MIR SINE MIR 117 149 -59 709 250 219 11 chr9 107657306 107657680 -10204947 + L2 LINE L2 2567 3001 -312 2106 88 0 11 chr9 107657687 107658001 -10204626 - AluSx SINE Alu 0 311 1 825 196 13 0 chr9 107658007 107658160 -10204467 - AluJb SINE Alu -18 294 140 540 287 142 11 chr9 107658164 107658439 -10204188 + L2 LINE L2 3003 3313 0 454 276 16 72 chr9 107658444 107658723 -10203904 + L2 LINE L2 2785 3051 -221 314 244 37 0 chr9 107659342 107659424 -10203203 + MIR SINE MIR 108 192 -70 2110 117 3 0 chr9 107659533 107659859 -10202768 - AluSx SINE Alu 0 312 1 271 250 250 10 chr9 107660334 107660434 -10202193 - MIR SINE MIR -62 146 23 243 241 69 0 chr9 107660624 107660682 -10201945 + MIR SINE MIR 84 145 -63 607 305 45 0 chr9 107660691 107660868 -10201759 - MIR SINE MIR -14 248 64 567 183 0 10 chr9 107661497 107661601 -10201026 + FRAM SINE Alu 69 171 -5 1033 295 63 27 chr9 107661610 107662206 -10200421 + L2 LINE L2 2688 3296 -17 213 276 13 26 chr9 107662223 107662299 -10200328 + MIR SINE MIR 70 144 -118 2329 83 0 40 chr9 107662351 107662677 -10199950 + AluSp SINE Alu 1 313 0 474 355 39 5 chr9 107662718 107662921 -10199706 + MIR SINE MIR 3 212 -50 202 347 74 0 chr9 107663395 107663490 -10199137 - MIR3 SINE MIR -25 183 82 582 264 141 0 chr9 107663853 107664016 -10198611 + MIR SINE MIR 17 202 -60 249 108 0 0 chr9 107664603 107664640 -10197987 + (CCCCG)n Simple_repeat Simple_repeat 3 39 0 711 238 48 5 chr9 107664862 107665051 -10197576 - MIR SINE MIR -12 250 54 2121 84 0 62 chr9 107665230 107665550 -10197077 - AluSg SINE Alu -10 300 1 265 210 303 34 chr9 107665702 107665821 -10196806 + MIR SINE MIR 3 153 -109 1788 138 80 0 chr9 107665825 107666100 -10196527 - AluSg SINE Alu -13 297 1 493 330 71 21 chr9 107666375 107666614 -10196013 + MIR SINE MIR 12 262 0 2057 104 0 0 chr9 107666656 107666936 -10195691 + AluSx SINE Alu 31 310 -2 721 262 24 48 chr9 107667610 107667798 -10194829 + MIR SINE MIR 13 195 -67 2359 87 7 0 chr9 107667798 107668107 -10194520 + AluSq SINE Alu 1 311 -2 721 262 24 48 chr9 107668107 107668166 -10194461 + MIR SINE MIR 195 254 -8 1378 171 4 21 chr9 107668202 107668338 -10194289 + AluJo SINE Alu 1 133 -179 2068 110 10 3 chr9 107668338 107668650 -10193977 + AluSx SINE Alu 1 312 0 1378 171 4 21 chr9 107668650 107668752 -10193875 + AluJo SINE Alu 133 235 -77 422 218 0 0 chr9 107668863 107668941 -10193686 + AluJo SINE Alu 217 294 -18 2262 114 0 0 chr9 107668941 107669248 -10193379 - AluSx SINE Alu -5 307 1 23 0 0 0 chr9 107669250 107669273 -10193354 + AT_rich Low_complexity Low_complexity 1 23 0 324 276 105 0 chr9 107669310 107669415 -10193212 - MIR SINE MIR -77 185 70 361 281 4 4 chr9 107669802 107669929 -10192698 - MIR SINE MIR -61 147 22 237 285 154 15 chr9 107670125 107670255 -10192372 + MIR SINE MIR 6 153 -109 1058 148 31 127 chr9 107670998 107671097 -10191530 + AluJb SINE Alu 49 156 -156 2168 99 3 13 chr9 107671097 107671410 -10191217 - AluSx SINE Alu -2 310 1 1058 148 31 127 chr9 107671410 107671601 -10191026 + AluJb SINE Alu 156 311 -1 201 238 24 36 chr9 107671603 107671687 -10190940 + (CAGAGA)n Simple_repeat Simple_repeat 5 87 0 358 266 12 87 chr9 107672406 107672593 -10190034 - MIR3 SINE MIR -45 163 2 188 231 19 19 chr9 107672729 107672781 -10189846 + MIR SINE MIR 98 149 -113 2109 81 17 20 chr9 107672929 107673226 -10189401 + AluSx SINE Alu 5 300 -12 517 304 7 0 chr9 107673380 107673518 -10189109 + MIR SINE MIR 61 199 -63 1844 104 8 19 chr9 107674244 107674512 -10188115 - AluSx SINE Alu -47 265 1 305 229 39 54 chr9 107674675 107674818 -10187809 + MIR SINE MIR 57 204 -58 590 341 15 10 chr9 107674994 107675199 -10187428 + MIR SINE MIR 1 206 -56 1825 94 17 54 chr9 107675265 107675562 -10187065 - AluSq SINE Alu -27 286 1 357 24 0 0 chr9 107675563 107675605 -10187022 + (TTA)n Simple_repeat Simple_repeat 2 43 0 1861 130 15 0 chr9 107675605 107675875 -10186752 - AluSx SINE Alu -30 282 9 460 291 118 10 chr9 107676694 107676897 -10185730 + MIR SINE MIR 38 262 0 2126 85 7 0 chr9 107677205 107677487 -10185140 - AluSg SINE Alu -22 288 5 475 284 171 14 chr9 107677952 107678174 -10184453 + MIR SINE MIR 6 262 0 30 0 0 0 chr9 107680379 107680409 -10182218 + AT_rich Low_complexity Low_complexity 1 30 0 2071 116 20 0 chr9 107681103 107681396 -10181231 - AluSx SINE Alu -13 299 1 1241 191 162 12 chr9 107681417 107681657 -10180970 - MLT1C LTR MaLR 0 467 264 2365 81 0 0 chr9 107681657 107681954 -10180673 - AluSq SINE Alu -16 297 1 1241 191 162 12 chr9 107681954 107682115 -10180512 - MLT1C LTR MaLR -203 264 6 874 179 24 6 chr9 107682137 107682305 -10180322 + AluSg/x SINE Alu 129 299 -11 352 124 2 0 chr9 107682305 107682394 -10180233 + AluSp SINE Alu 132 202 -101 292 272 19 10 chr9 107682748 107682851 -10179776 + AluSc SINE Alu 193 296 -3 1931 117 35 3 chr9 107682857 107683147 -10179480 + AluSx SINE Alu 1 299 -13 268 164 0 33 chr9 107683245 107683306 -10179321 + L1ME LINE L1 5589 5647 -474 194 361 76 17 chr9 107683372 107683491 -10179136 - L2 LINE L2 0 3313 3188 848 121 0 8 chr9 107683765 107683889 -10178738 - FLAM_C SINE Alu -10 123 1 199 214 214 14 chr9 107684089 107684159 -10178468 + L2 LINE L2 3191 3274 -39 196 211 26 0 chr9 107684156 107684194 -10178433 + L2 LINE L2 3198 3236 -36 * 1129 122 0 6 chr9 107684567 107684739 -10177888 - AluSg/x SINE Alu -7 305 135 2222 112 0 0 chr9 107685657 107685962 -10176665 + AluSg SINE Alu 1 305 -5 1121 133 0 0 chr9 107685962 107686127 -10176500 + AluSg/x SINE Alu 136 300 -10 2461 65 3 0 chr9 107686127 107686437 -10176190 + AluY SINE Alu 1 311 0 260 200 11 111 chr9 107686440 107686530 -10176097 - MIR SINE MIR -62 146 66 2276 97 0 0 chr9 107688559 107688857 -10173770 - AluSx SINE Alu -14 298 1 848 226 0 6 chr9 107688936 107689095 -10173532 + AluJb SINE Alu 142 299 -13 860 163 0 15 chr9 107689150 107689285 -10173342 + FLAM_C SINE Alu 1 133 0 1016 95 0 15 chr9 107689755 107689892 -10172735 + AluSq/x SINE Alu 1 135 -177 2160 123 0 0 chr9 107689892 107690193 -10172434 + AluSx SINE Alu 1 301 -11 241 266 202 32 chr9 107691364 107691488 -10171139 + MIR3 SINE MIR 3 147 -61 2043 148 0 7 chr9 107691490 107691794 -10170833 + AluSx SINE Alu 1 302 -10 244 232 29 14 chr9 107692032 107692101 -10170526 + MIR3 SINE MIR 92 161 -47 180 0 0 0 chr9 107692615 107692635 -10169992 + (T)n Simple_repeat Simple_repeat 1 20 0 378 324 44 0 chr9 107692711 107692847 -10169780 + MIR SINE MIR 86 227 -35 235 317 21 0 chr9 107693497 107693639 -10168988 + G-rich Low_complexity Low_complexity 4 148 0 288 365 88 18 chr9 107694007 107694177 -10168450 + MIR SINE MIR 11 192 -70 236 229 180 0 chr9 107694213 107694274 -10168353 - MIR3 SINE MIR -19 189 118 213 261 136 11 chr9 107694315 107694403 -10168224 + MIR SINE MIR 46 144 -118 635 141 0 70 chr9 107694836 107694865 -10167762 - AluSg/x SINE Alu 0 310 281 2277 64 7 17 chr9 107694865 107695163 -10167464 + AluY SINE Alu 1 295 -16 635 141 0 70 chr9 107695163 107695261 -10167366 - AluSg/x SINE Alu -29 281 192 667 199 0 30 chr9 107695375 107695541 -10167086 - MER112 DNA MER1_type -92 168 8 1396 152 99 57 chr9 107695564 107695847 -10166780 + AluJb SINE Alu 1 295 -17 1115 103 11 51 chr9 107695895 107696070 -10166557 - AluSg/x SINE Alu -11 301 134 1932 109 0 76 chr9 107696070 107696399 -10166228 - AluSx SINE Alu -8 304 1 342 198 247 9 chr9 107696514 107696638 -10165989 + MIR SINE MIR 9 162 -46 282 313 25 0 chr9 107697732 107697812 -10164815 + MIR3 SINE MIR 78 159 -49 337 270 167 73 chr9 107697821 107697936 -10164691 - MIR SINE MIR -24 238 135 2215 63 3 33 chr9 107697936 107698236 -10164391 + AluSc SINE Alu 1 291 -18 337 270 167 73 chr9 107698236 107698324 -10164303 - MIR SINE MIR -127 135 16 206 200 0 0 chr9 107699380 107699415 -10163212 + G-rich Low_complexity Low_complexity 2 36 0 206 318 117 39 chr9 107699894 107700048 -10162579 + MIR3 SINE MIR 21 186 -22 208 297 109 0 chr9 107700931 107700995 -10161632 + MIR SINE MIR 30 100 -162 315 191 0 0 chr9 107701468 107701536 -10161091 + (TGGA)n Simple_repeat Simple_repeat 1 68 0 2478 57 0 0 chr9 107702582 107702882 -10159745 - AluY SINE Alu -11 300 1 375 310 121 6 chr9 107702898 107703072 -10159555 - MIR SINE MIR -6 256 63 269 310 0 35 chr9 107703314 107703401 -10159226 - MIR3 SINE MIR -5 203 120 1198 115 33 6 chr9 107703851 107704033 -10158594 - AluSq SINE Alu -19 294 108 2433 54 0 3 chr9 107704181 107704475 -10158152 + AluY SINE Alu 1 293 -18 632 176 271 41 chr9 107704614 107704784 -10157843 + Tigger3(Golem) DNA MER2_type 3 211 -2818 1898 151 3 0 chr9 107704784 107705082 -10157545 + AluSx SINE Alu 1 299 -13 1872 94 7 94 chr9 107705082 107705246 -10157381 + AluSx SINE Alu 1 125 -185 2060 89 7 24 chr9 107705246 107705538 -10157089 + AluSg SINE Alu 17 303 -7 1872 94 7 94 chr9 107705538 107705710 -10156917 + AluSx SINE Alu 125 310 0 692 302 143 24 chr9 107705863 107706456 -10156171 + L1ME4a LINE L1 5383 6046 -75 2057 127 3 0 chr9 107706475 107706774 -10155853 - AluSx SINE Alu -12 300 1 1306 91 6 0 chr9 107706782 107706958 -10155669 - AluY SINE Alu -13 298 122 2261 69 0 0 chr9 107707025 107707302 -10155325 - AluY SINE Alu -14 297 21 2184 124 3 0 chr9 107707308 107707615 -10155012 - AluSx SINE Alu -4 308 1 480 290 58 19 chr9 107707691 107707846 -10154781 - MIR SINE MIR -9 253 93 885 98 0 0 chr9 107708147 107708269 -10154358 - AluSg/x SINE Alu -6 303 182 405 182 23 11 chr9 107708271 107708359 -10154268 - MIR SINE MIR -93 169 81 212 83 0 28 chr9 107708391 107708427 -10154200 + (GGGAA)n Simple_repeat Simple_repeat 4 38 0 232 271 120 15 chr9 107708680 107708813 -10153814 + L2 LINE L2 2907 3053 -219 217 51 51 0 chr9 107709201 107709240 -10153387 + (CTGGGG)n Simple_repeat Simple_repeat 5 45 0 1584 113 0 0 chr9 107709673 107709886 -10152741 + AluSq SINE Alu 1 213 -100 704 124 0 0 chr9 107709923 107710028 -10152599 + AluSg/x SINE Alu 205 309 0 2133 106 0 26 chr9 107710041 107710344 -10152283 + AluSg SINE Alu 1 295 -15 310 306 28 9 chr9 107711383 107711491 -10151136 - MIR SINE MIR -118 144 35 194 292 153 0 chr9 107712371 107712443 -10150184 - MIR SINE MIR -89 119 37 293 313 17 52 chr9 107713200 107713315 -10149312 + MIR3 SINE MIR 51 161 -47 22 0 0 0 chr9 107713325 107713347 -10149280 + AT_rich Low_complexity Low_complexity 1 22 0 467 307 89 11 chr9 107713414 107713593 -10149034 + MIR SINE MIR 56 248 -14 275 131 49 0 chr9 107714427 107714488 -10148139 + Charlie5 DNA MER1_type 2331 2394 -218 470 133 20 51 chr9 107714488 107714586 -10148041 + AluJo SINE Alu 41 135 -177 2293 106 0 0 chr9 107714586 107714889 -10147738 + AluSx SINE Alu 1 303 -9 2223 85 3 0 chr9 107714891 107715174 -10147453 + AluSg SINE Alu 1 284 -26 2033 138 0 3 chr9 107715412 107715733 -10146894 + AluSx SINE Alu 1 320 0 1776 176 0 0 chr9 107715852 107716170 -10146457 - AluJb SINE Alu 0 318 1 254 119 24 0 chr9 107716785 107716827 -10145800 + MER4D LTR ERV1 760 802 -70 2092 97 17 13 chr9 107716849 107717149 -10145478 + AluSx SINE Alu 1 301 -11 246 319 11 11 chr9 107717197 107717291 -10145336 + Charlie8 DNA MER1_type 177 270 -2147 223 309 12 12 chr9 107717637 107717718 -10144909 - MIR SINE MIR -2 260 180 717 236 89 10 chr9 107718448 107718653 -10143974 + MIR SINE MIR 33 257 -5 2410 78 0 0 chr9 107718698 107719006 -10143621 - AluY SINE Alu -3 308 1 241 259 12 71 chr9 107719040 107719125 -10143502 - MIR SINE MIR -80 182 103 213 65 0 0 chr9 107719297 107719328 -10143299 + (T)n Simple_repeat Simple_repeat 1 31 0 359 334 173 15 chr9 107719460 107719858 -10142769 + L2 LINE L2 2843 3303 -10 191 271 118 12 chr9 107720237 107720322 -10142305 + MIR SINE MIR 31 124 -84 299 289 317 0 chr9 107720355 107720497 -10142130 + MIR SINE MIR 2 188 -74 1695 64 4 9 chr9 107720649 107720913 -10141714 + AluSg/x SINE Alu 81 343 0 23 0 0 0 chr9 107721643 107721666 -10140961 + GC_rich Low_complexity Low_complexity 1 23 0 39 50 0 0 chr9 107721792 107721852 -10140775 + GC_rich Low_complexity Low_complexity 1 60 0 251 241 7 21 chr9 107722354 107722499 -10140128 + CT-rich Low_complexity Low_complexity 4 146 0 228 347 6 23 chr9 107722512 107722688 -10139939 + C-rich Low_complexity Low_complexity 1 173 0 24 0 0 0 chr9 107722729 107722753 -10139874 + GC_rich Low_complexity Low_complexity 1 24 0 341 255 11 43 chr9 107723674 107723768 -10138859 - MIR3 SINE MIR -21 187 97 645 163 31 0 chr9 107723935 107724033 -10138594 + AluJo SINE Alu 34 134 -178 2096 105 23 3 chr9 107724294 107724600 -10138027 + AluSx SINE Alu 1 312 0 832 102 8 0 chr9 107724756 107724874 -10137753 + AluSp/q SINE Alu 178 296 -17 371 317 121 27 chr9 107725278 107725757 -10136870 + L1M4 LINE L1 4479 5002 -1144 21 57 0 0 chr9 107725995 107726030 -10136597 + AT_rich Low_complexity Low_complexity 1 35 0 1849 221 90 34 chr9 107726043 107726545 -10136082 - MLT1F LTR MaLR -2 540 11 30 45 0 0 chr9 107726694 107726738 -10135889 + AT_rich Low_complexity Low_complexity 1 44 0 636 269 73 34 chr9 107726815 107726887 -10135740 - MIR SINE MIR 0 262 194 2051 101 34 3 chr9 107726887 107727185 -10135442 - AluSx SINE Alu -5 307 1 636 269 73 34 chr9 107727185 107727367 -10135260 - MIR SINE MIR -68 194 3 569 246 66 6 chr9 107728141 107728308 -10134319 - MIR SINE MIR 0 262 86 1940 103 3 21 chr9 107728348 107728638 -10133989 - AluSx SINE Alu -26 286 2 612 338 65 4 chr9 107728656 107728887 -10133740 - MIR SINE MIR -2 260 16 1562 143 17 61 chr9 107728942 107729120 -10133507 - AluJo SINE Alu -7 305 144 2171 106 0 3 chr9 107729120 107729413 -10133214 - AluSc SINE Alu -17 292 1 1562 143 17 61 chr9 107729413 107729528 -10133099 - AluJo SINE Alu -168 144 25 235 286 14 0 chr9 107729620 107729690 -10132937 + MIR SINE MIR 34 104 -104 1691 148 44 27 chr9 107729808 107729947 -10132680 + AluJb SINE Alu 1 136 -176 2293 84 3 0 chr9 107729947 107730245 -10132382 + AluSx SINE Alu 1 299 -13 1691 148 44 27 chr9 107730245 107730403 -10132224 + AluJb SINE Alu 136 303 -9 2220 103 0 0 chr9 107730413 107730714 -10131913 + AluSq SINE Alu 1 301 -12 2366 145 31 87 chr9 107730719 107730756 -10131871 + L1MB7 LINE L1 5574 5612 -572 2251 100 0 3 chr9 107730756 107731065 -10131562 + AluSp SINE Alu 1 308 -5 2366 145 31 87 chr9 107731065 107731349 -10131278 + L1MB7 LINE L1 5612 5859 -325 2025 118 0 0 chr9 107731349 107731659 -10130968 + AluSq SINE Alu 1 310 0 2366 145 31 87 chr9 107731659 107731851 -10130776 + L1MB7 LINE L1 5859 6060 -124 483 147 0 0 chr9 107731854 107731929 -10130698 + AluJ/FRAM SINE Alu 219 293 -19 1893 161 3 0 chr9 107732331 107732630 -10129997 - AluJo SINE Alu -12 300 1 1898 148 7 0 chr9 107732734 107733044 -10129583 + AluSx SINE Alu 1 312 0 311 262 65 37 chr9 107733401 107733508 -10129119 - L2 LINE L2 -5 3308 3199 1524 179 4 7 chr9 107733541 107733676 -10128951 + AluJb SINE Alu 1 135 -177 432 0 0 0 chr9 107733676 107733724 -10128903 + (TA)n Simple_repeat Simple_repeat 2 49 0 1524 179 4 7 chr9 107733724 107733868 -10128759 + AluJb SINE Alu 135 279 -33 222 118 0 0 chr9 107733868 107733902 -10128725 + (CA)n Simple_repeat Simple_repeat 1 34 0 2197 117 0 0 chr9 107733926 107734233 -10128394 + AluSx SINE Alu 1 307 -5 2213 84 3 10 chr9 107734282 107734592 -10128035 + AluY SINE Alu 1 308 -3 2207 93 0 0 chr9 107734644 107734934 -10127693 - AluSx SINE Alu -22 290 1 2289 84 0 31 chr9 107735176 107735496 -10127131 + AluSg SINE Alu 1 310 0 1995 121 0 7 chr9 107735616 107735906 -10126721 - AluSc SINE Alu -17 292 5 280 275 33 17 chr9 107735942 107736062 -10126565 - L1M4 LINE L1 -3062 3084 2963 2115 129 3 0 chr9 107736080 107736391 -10126236 - AluSx SINE Alu 0 312 1 794 161 101 42 chr9 107736427 107736595 -10126032 - FRAM SINE Alu 0 176 1 1341 171 101 8 chr9 107737145 107737403 -10125224 - AluJb SINE Alu -30 282 1 1650 195 0 19 chr9 107737427 107737607 -10125020 - AluJb SINE Alu 0 312 139 240 35 0 0 chr9 107737607 107737636 -10124991 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 1650 195 0 19 chr9 107737636 107737773 -10124854 - AluJb SINE Alu -173 139 1 1639 145 0 122 chr9 107737831 107738175 -10124452 - AluSx SINE Alu 0 302 1 267 268 52 31 chr9 107738514 107738611 -10124016 - L2 LINE L2 -1 3312 3214 333 336 104 13 chr9 107738774 107739303 -10123324 - L2 LINE L2 -378 2936 2360 1623 163 14 0 chr9 107739848 107739968 -10122659 + AluJo SINE Alu 1 118 -194 198 0 0 0 chr9 107739968 107739990 -10122637 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 1623 163 14 0 chr9 107739990 107740146 -10122481 + AluJo SINE Alu 118 281 -31 1782 146 86 23 chr9 107740148 107740498 -10122129 + THE1C LTR MaLR 4 375 0 252 329 14 0 chr9 107740524 107740597 -10122030 - L3 LINE CR1 -1 1576 1503 2041 129 0 3 chr9 107741362 107741665 -10120962 + AluSx SINE Alu 1 302 -10 634 266 34 23 chr9 107741697 107741874 -10120753 - HAL1 LINE L1 -1761 746 568 2319 82 0 3 chr9 107741892 107742197 -10120430 - AluY SINE Alu -7 304 1 686 243 0 0 chr9 107742217 107742357 -10120270 - HAL1 LINE L1 -2198 309 170 2257 94 0 0 chr9 107742481 107742778 -10119849 - AluSp SINE Alu -16 297 1 763 195 8 0 chr9 107744117 107744245 -10118382 + FLAM_A SINE Alu 1 129 -4 189 269 8 119 chr9 107744265 107744326 -10118301 + MIR3 SINE MIR 87 153 -55 892 175 139 10 chr9 107744326 107744520 -10118107 - MER20 DNA MER1_type 0 219 1 189 269 8 119 chr9 107744520 107744532 -10118095 + MIR3 SINE MIR 153 165 -43 2198 94 0 16 chr9 107744532 107744839 -10117788 - AluSq SINE Alu -11 302 1 189 269 8 119 chr9 107744839 107744898 -10117729 + MIR3 SINE MIR 165 205 -3 2118 92 3 0 chr9 107745151 107745474 -10117153 + AluSx SINE Alu 1 324 0 2279 100 0 3 chr9 107745592 107745903 -10116724 - AluSx SINE Alu -2 310 1 705 97 58 0 chr9 107746344 107746447 -10116180 - AluSp/q SINE Alu -17 296 188 1474 126 0 5 chr9 107746493 107746707 -10115920 - AluSx SINE Alu -99 213 1 2229 77 0 3 chr9 107746716 107747026 -10115601 - AluSp SINE Alu 0 309 1 698 139 87 0 chr9 107747734 107747849 -10114778 - FLAM_C SINE Alu -8 125 1 2937 183 29 66 chr9 107747904 107748198 -10114429 - L1MB8 LINE L1 -6 6172 5869 2200 80 3 0 chr9 107748198 107748485 -10114142 - AluY SINE Alu -23 288 1 2937 183 29 66 chr9 107748485 107748725 -10113902 - L1MB8 LINE L1 -309 5869 5667 2014 139 0 0 chr9 107748725 107749027 -10113600 - AluSx SINE Alu -10 302 1 2937 183 29 66 chr9 107749027 107749185 -10113442 - L1MB8 LINE L1 -511 5667 5505 400 327 12 12 chr9 107749315 107749480 -10113147 + MIR SINE MIR 95 259 -3 1972 129 14 0 chr9 107749531 107749825 -10112802 - AluSq SINE Alu -15 298 1 2284 82 13 0 chr9 107749844 107750147 -10112480 - AluSg SINE Alu 0 310 4 433 327 95 9 chr9 107750267 107750478 -10112149 + L2 LINE L2 3083 3311 -2 839 286 61 0 chr9 107750610 107750855 -10111772 - MIR SINE MIR 0 262 3 194 237 0 0 chr9 107751102 107751140 -10111487 + L3b LINE CR1 1535 1572 -11 284 275 78 7 chr9 107751319 107751461 -10111166 + L1MC4a LINE L1 5755 5906 -1902 1090 126 0 0 chr9 107751686 107751845 -10110782 + AluSp SINE Alu 137 295 -18 227 246 191 32 chr9 107752056 107752182 -10110445 + L3 LINE CR1 1226 1371 -206 1284 132 9 26 chr9 107752555 107752783 -10109844 - AluJb SINE Alu 0 312 89 2281 105 0 0 chr9 107752957 107753263 -10109364 - AluSx SINE Alu -6 306 1 439 245 108 78 chr9 107753399 107753540 -10109087 - MIR SINE MIR -20 242 92 2018 112 0 17 chr9 107753540 107753835 -10108792 + AluSx SINE Alu 7 296 -16 439 245 108 78 chr9 107753835 107753897 -10108730 - MIR SINE MIR -170 92 33 418 330 101 46 chr9 107755147 107755474 -10107153 + L1ME4a LINE L1 5380 5724 -397 1167 298 136 24 chr9 107755633 107756290 -10106337 + L2 LINE L2 1051 1780 -1534 961 104 0 0 chr9 107756301 107756435 -10106192 - AluSg/x SINE Alu -45 265 132 2143 74 44 0 chr9 107756435 107756732 -10105895 - AluSg SINE Alu 0 310 1 295 205 239 26 chr9 107756734 107756851 -10105776 + L2 LINE L2 1769 1910 -1404 1039 284 185 24 chr9 107756901 107757800 -10104827 + L2 LINE L2 2216 3308 -5 421 237 34 0 chr9 107757816 107757934 -10104693 - L1ME4a LINE L1 -280 5841 5720 489 265 146 36 chr9 107757981 107758095 -10104532 + L1ME4a LINE L1 5791 5891 -230 1825 153 10 0 chr9 107758095 107758389 -10104238 - AluJb SINE Alu -15 297 1 489 265 146 36 chr9 107758389 107758487 -10104140 + L1ME4a LINE L1 5891 5977 -144 2095 111 0 16 chr9 107758487 107758803 -10103824 - AluSx SINE Alu -1 311 1 489 265 146 36 chr9 107758803 107758842 -10103785 + L1ME4a LINE L1 5977 6071 -50 2517 62 0 0 chr9 107758843 107759152 -10103475 - AluY SINE Alu -2 309 1 2158 107 0 0 chr9 107759158 107759448 -10103179 - AluSc SINE Alu -19 290 1 2163 110 0 19 chr9 107759483 107759793 -10102834 - AluSx SINE Alu -8 304 1 465 19 0 0 chr9 107759837 107759891 -10102736 + (TG)n Simple_repeat Simple_repeat 1 54 0 423 0 0 0 chr9 107760087 107760134 -10102493 + (TG)n Simple_repeat Simple_repeat 1 47 0 1411 179 67 32 chr9 107760323 107760734 -10101893 + Charlie1b DNA MER1_type 46 523 0 1576 87 114 101 chr9 107760757 107761055 -10101572 - AluSx SINE Alu -10 302 1 306 0 0 0 chr9 107762721 107762755 -10099872 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1854 114 44 0 chr9 107762755 107763051 -10099576 - AluSx SINE Alu 0 308 1 22 56 0 0 chr9 107763094 107763130 -10099497 + AT_rich Low_complexity Low_complexity 1 36 0 329 238 178 20 chr9 107763544 107763645 -10098982 + L2 LINE L2 3153 3269 -3 1360 309 51 9 chr9 107763659 107764307 -10098320 + L1ME3A LINE L1 5285 5962 -208 2555 164 6 3 chr9 107764552 107765276 -10097351 - L1MC/D LINE L1 -678 5655 4930 1990 112 7 0 chr9 107765349 107765652 -10096975 - AluSx SINE Alu 0 306 2 1822 144 0 32 chr9 107765709 107766021 -10096606 - AluSx SINE Alu -10 302 1 366 276 76 53 chr9 107766151 107766376 -10096251 - HAL1 LINE L1 -36 2471 2242 2128 120 7 0 chr9 107766431 107766739 -10095888 + AluSg SINE Alu 1 310 0 248 356 10 0 chr9 107767248 107767349 -10095278 + L3b LINE CR1 1131 1232 -351 2000 136 0 19 chr9 107767472 107767789 -10094838 - AluSx SINE Alu -1 311 1 2066 105 0 3 chr9 107768545 107768870 -10093757 - AluSx SINE Alu 0 324 1 1784 151 30 3 chr9 107768916 107769215 -10093412 - AluJo SINE Alu 0 312 6 2080 112 10 0 chr9 107770342 107770636 -10091991 + AluSx SINE Alu 1 297 -15 2326 96 0 3 chr9 107771896 107772208 -10090419 + AluY SINE Alu 1 311 0 784 288 156 17 chr9 107772345 107772748 -10089879 + L2 LINE L2 2852 3310 -3 404 147 27 0 chr9 107775145 107775220 -10087407 - MER81 DNA DNA -1 113 37 329 221 18 97 chr9 107775321 107775445 -10087182 - L1MD2 LINE L1 -20 6178 6035 342 240 27 0 chr9 107775445 107775520 -10087107 - MER81 DNA DNA -37 77 1 2161 109 0 10 chr9 107776002 107776304 -10086323 - AluSg SINE Alu -10 300 2 2275 89 0 3 chr9 107776316 107776619 -10086008 - AluSg SINE Alu -7 303 2 2213 108 0 0 chr9 107778478 107778775 -10083852 + AluSx SINE Alu 1 297 -15 275 241 207 0 chr9 107778935 107779022 -10083605 - Charlie7 DNA MER1_type -2507 105 1 2260 110 0 0 chr9 107779077 107779385 -10083242 - AluSx SINE Alu -4 308 1 1953 135 6 6 chr9 107779732 107780044 -10082583 - AluSx SINE Alu 0 312 1 2082 125 0 3 chr9 107780070 107780373 -10082254 + AluSg SINE Alu 1 302 -8 38 0 0 0 chr9 107780528 107780566 -10082061 + AT_rich Low_complexity Low_complexity 1 38 0 403 305 41 69 chr9 107780669 107780752 -10081875 + L2 LINE L2 2702 2786 -486 216 0 0 0 chr9 107780752 107780776 -10081851 + (CA)n Simple_repeat Simple_repeat 2 25 0 403 305 41 69 chr9 107780776 107781173 -10081454 + L2 LINE L2 2786 3272 0 1573 196 16 26 chr9 107781952 107782258 -10080369 - MLT1F1 LTR MaLR -262 305 3 2206 103 0 0 chr9 107782260 107782551 -10080076 + AluSx SINE Alu 1 291 -21 182 344 31 0 chr9 107782707 107782771 -10079856 + L2 LINE L2 3205 3270 -2 274 298 153 8 chr9 107783333 107783457 -10079170 + MIR SINE MIR 50 191 -71 2152 114 0 0 chr9 107783556 107783855 -10078772 + AluSg SINE Alu 1 299 -11 1872 109 64 7 chr9 107784817 107785100 -10077527 - AluJo SINE Alu -13 299 1 2714 19 0 0 chr9 107787187 107787495 -10075132 - AluY SINE Alu -3 308 1 2285 99 0 10 chr9 107787543 107787856 -10074771 - AluSx SINE Alu -2 310 1 21 36 0 0 chr9 107789093 107789121 -10073506 + AT_rich Low_complexity Low_complexity 1 28 0 770 246 42 45 chr9 107789959 107790215 -10072412 + L2 LINE L2 2729 2984 -329 2146 118 0 0 chr9 107790215 107790511 -10072116 + AluSx SINE Alu 1 296 -16 770 246 42 45 chr9 107790511 107790602 -10072025 + L2 LINE L2 2984 3074 -239 263 255 85 11 chr9 107790612 107790706 -10071921 + L1ME LINE L1 5694 5794 -372 240 335 67 11 chr9 107792391 107792527 -10070100 + MIR SINE MIR 17 154 -67 235 298 0 0 chr9 107793833 107793890 -10068737 + (TG)n Simple_repeat Simple_repeat 2 58 0 1127 153 12 0 chr9 107794964 107795134 -10067493 - FAM SINE Alu -3 172 1 27 0 0 0 chr9 107795233 107795260 -10067367 + AT_rich Low_complexity Low_complexity 1 27 0 2245 103 0 19 chr9 107795260 107795579 -10067048 - AluSp SINE Alu 0 313 1 250 323 70 27 chr9 107795840 107796026 -10066601 + MIR3 SINE MIR 14 207 -1 1884 154 3 6 chr9 107796922 107797234 -10065393 - AluJb SINE Alu -1 311 1 236 322 119 8 chr9 107797767 107797885 -10064742 + MIR3 SINE MIR 30 160 -48 219 240 60 40 chr9 107797887 107797987 -10064640 - MER5A DNA MER1_type 0 189 88 189 0 0 0 chr9 107799744 107799765 -10062862 + (TTTTTA)n Simple_repeat Simple_repeat 2 22 0 23 0 0 0 chr9 107802144 107802167 -10060460 + AT_rich Low_complexity Low_complexity 1 23 0 1775 116 8 8 chr9 107802597 107802865 -10059762 - AluSx SINE Alu -1 311 44 285 220 31 5 chr9 107803391 107803470 -10059157 - MIR SINE MIR -59 149 98 1538 144 0 93 chr9 107803506 107803860 -10058767 - AluJb SINE Alu 0 325 1 249 311 67 0 chr9 107804517 107804607 -10058020 + MIR SINE MIR 10 105 -157 501 80 0 0 chr9 107804682 107804757 -10057870 + (ATG)n Simple_repeat Simple_repeat 3 77 0 353 311 52 24 chr9 107804787 107804999 -10057628 + L1ME3A LINE L1 5718 5935 -235 3192 72 23 2 chr9 107804999 107805427 -10057200 + LTR3b LTR ERVK 1 437 0 1879 135 14 0 chr9 107805684 107805973 -10056654 + AluJb SINE Alu 1 293 -19 859 241 49 0 chr9 107805979 107806182 -10056445 - MIR SINE MIR -22 240 28 2046 101 0 24 chr9 107806207 107806505 -10056122 + AluSx SINE Alu 3 293 -19 2167 107 0 3 chr9 107807006 107807305 -10055322 + AluSx SINE Alu 1 298 -14 672 212 72 14 chr9 107807526 107807748 -10054879 + L1M3 LINE L1 5098 5332 -814 711 156 0 57 chr9 107807751 107807892 -10054735 + FLAM_A SINE Alu 10 142 0 591 156 199 0 chr9 107807892 107808033 -10054594 + L1M3 LINE L1 5323 5491 -689 1693 141 49 14 chr9 107808033 107808317 -10054310 + AluJb SINE Alu 1 294 -18 508 165 19 19 chr9 107808325 107808428 -10054199 + LTR47A LTR ERVL 196 298 -154 1843 98 98 0 chr9 107808534 107808810 -10053817 - AluSx SINE Alu -9 303 1 310 108 446 0 chr9 107809206 107809280 -10053347 + U6 snRNA snRNA 1 107 0 388 209 194 8 chr9 107809435 107809569 -10053058 + MIR SINE MIR 5 163 -99 835 84 0 0 chr9 107809569 107809676 -10052951 + AluSq/x SINE Alu 43 149 -164 280 104 42 0 chr9 107809676 107809724 -10052903 + Alu SINE Alu 246 295 -6 5250 138 62 15 chr9 107810042 107810922 -10051705 + MER49 LTR ERV1 1 922 -1 243 0 0 0 chr9 107811058 107811085 -10051542 + (TGAA)n Simple_repeat Simple_repeat 2 28 0 2099 101 7 10 chr9 107811259 107811557 -10051070 + AluSp SINE Alu 1 297 -16 1488 164 3 56 chr9 107811568 107811720 -10050907 + AluJo SINE Alu 1 129 -183 2441 67 0 0 chr9 107811720 107812019 -10050608 + AluY SINE Alu 1 299 -12 1488 164 3 56 chr9 107812019 107812189 -10050438 + AluJo SINE Alu 129 306 -6 2190 105 0 29 chr9 107812334 107812649 -10049978 - AluSx SINE Alu -6 306 1 773 115 142 0 chr9 107812649 107812797 -10049830 + LTR54 LTR ERV1 302 470 -40 1940 138 47 0 chr9 107812797 107813095 -10049532 + AluSx SINE Alu 1 312 0 246 128 0 0 chr9 107813095 107813134 -10049493 + (GA)n Simple_repeat Simple_repeat 1 39 0 1181 273 67 77 chr9 107813168 107813750 -10048877 - L1M4b LINE L1 -6055 804 229 2010 115 13 16 chr9 107813851 107814163 -10048464 + AluSx SINE Alu 1 311 -1 987 165 54 45 chr9 107814176 107814416 -10048211 + LTR24B LTR ERV1 25 262 -291 1549 148 8 4 chr9 107814433 107814676 -10047951 - AluJo SINE Alu -68 244 1 213 282 154 18 chr9 107817213 107817323 -10045304 + MIR3 SINE MIR 71 195 -13 394 280 112 7 chr9 107817577 107817720 -10044907 - MIR SINE MIR -70 192 35 2151 95 0 0 chr9 107817825 107818110 -10044517 + AluSg SINE Alu 1 285 -25 32 0 0 0 chr9 107818110 107818142 -10044485 + AT_rich Low_complexity Low_complexity 1 32 0 193 274 192 0 chr9 107818272 107818345 -10044282 - L2 LINE L2 -4 3268 3182 606 189 78 61 chr9 107818563 107818743 -10043884 + MIR SINE MIR 9 191 -71 462 202 109 17 chr9 107818734 107818853 -10043774 - L2 LINE L2 -8 3305 3176 * 245 359 61 23 chr9 107819420 107819551 -10043076 - MIR SINE MIR -54 208 73 1883 140 0 35 chr9 107819618 107819933 -10042694 + AluJo SINE Alu 1 304 -8 345 241 75 4 chr9 107822853 107822970 -10039657 + MIR SINE MIR 18 145 -63 2354 103 0 0 chr9 107823120 107823434 -10039193 - AluSx SINE Alu 0 314 1 184 300 138 0 chr9 107824394 107824474 -10038153 - MIR SINE MIR -92 170 80 246 333 20 10 chr9 107825515 107825617 -10037010 + MIR SINE MIR 39 141 -67 275 323 50 0 chr9 107826664 107826763 -10035864 + MIR SINE MIR 43 146 -62 742 197 81 50 chr9 107827577 107827705 -10034922 + MER3 DNA MER1_type 1 139 -70 2054 126 10 3 chr9 107827705 107828015 -10034612 - AluSx SINE Alu 0 312 1 742 197 81 50 chr9 107828015 107828084 -10034543 + MER3 DNA MER1_type 139 204 -5 2024 137 10 0 chr9 107828224 107828517 -10034110 - AluSx SINE Alu -14 298 3 556 121 0 33 chr9 107828558 107828649 -10033978 + AluSc SINE Alu 1 88 -221 189 154 0 0 chr9 107829059 107829098 -10033529 + (CAGAGA)n Simple_repeat Simple_repeat 2 40 0 2034 129 0 17 chr9 107829201 107829503 -10033124 + AluSx SINE Alu 1 297 -15 386 229 57 0 chr9 107829612 107829729 -10032898 - MIR SINE MIR -63 145 36 1871 148 0 20 chr9 107829773 107830076 -10032551 - AluSx SINE Alu -15 297 1 189 154 0 0 chr9 107830179 107830218 -10032409 + (TCTCTG)n Simple_repeat Simple_repeat 2 40 0 200 244 22 0 chr9 107830706 107830751 -10031876 + L2 LINE L2 3255 3300 -13 735 113 0 120 chr9 107831303 107831387 -10031240 - FLAM_C SINE Alu -170 132 72 2211 87 3 10 chr9 107831387 107831697 -10030930 + AluSq SINE Alu 1 308 -5 735 113 0 120 chr9 107831697 107831762 -10030865 - FLAM_C SINE Alu -230 72 1 259 262 35 57 chr9 107832861 107833002 -10029625 - L1ME4a LINE L1 -63 6058 5921 180 383 18 42 chr9 107833006 107833173 -10029454 - MIR3 SINE MIR -28 180 18 2140 123 0 0 chr9 107833712 107834013 -10028614 + AluSx SINE Alu 1 301 -11 2262 110 0 13 chr9 107834013 107834330 -10028297 + AluSq SINE Alu 1 313 0 373 198 35 0 chr9 107834726 107834812 -10027815 - MIR SINE MIR -21 241 153 1538 115 0 5 chr9 107834812 107835030 -10027597 - AluSg/x SINE Alu -11 299 83 2238 101 3 0 chr9 107835031 107835337 -10027290 - AluSg SINE Alu -3 307 1 1569 129 0 5 chr9 107835337 107835561 -10027066 - AluSg/x SINE Alu -5 305 83 911 204 0 0 chr9 107835562 107835719 -10026908 - AluJb SINE Alu -11 301 145 2310 101 3 0 chr9 107835719 107836027 -10026600 - AluSx SINE Alu -3 309 1 436 240 25 25 chr9 107836027 107836148 -10026479 - MIR SINE MIR -106 156 36 339 109 0 0 chr9 107836171 107836226 -10026401 - AluSp/q SINE Alu -5 298 244 244 105 0 0 chr9 107836217 107836255 -10026372 + Alu SINE Alu 72 109 -191 * 554 94 0 0 chr9 107836290 107836375 -10026252 - HY3 scRNA scRNA -2 99 15 2276 108 3 0 chr9 107836402 107836709 -10025918 - AluSx SINE Alu -4 308 1 2351 87 3 3 chr9 107836892 107837201 -10025426 + AluSp SINE Alu 1 309 -4 556 83 0 0 chr9 107837606 107837690 -10024937 - HY3 scRNA scRNA -2 99 16 1455 166 12 98 chr9 107837718 107838055 -10024572 - AluJo SINE Alu -4 308 1 2050 124 17 0 chr9 107838057 107838355 -10024272 - AluSg SINE Alu -7 303 1 919 114 8 0 chr9 107838355 107838486 -10024141 - AluSc SINE Alu -175 134 3 23 0 0 0 chr9 107838495 107838518 -10024109 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr9 107838638 107838660 -10023967 + AT_rich Low_complexity Low_complexity 1 22 0 2000 141 10 0 chr9 107838660 107838950 -10023677 - AluJb SINE Alu -18 294 2 280 79 0 0 chr9 107839340 107839378 -10023249 + MIR SINE MIR 111 148 -114 448 263 115 7 chr9 107840227 107840426 -10022201 + MIR SINE MIR 3 227 -35 2100 113 3 3 chr9 107840449 107840740 -10021887 - AluSx SINE Alu -21 291 1 233 290 16 16 chr9 107840898 107840960 -10021667 + MIR3 SINE MIR 111 172 -36 450 96 0 0 chr9 107841396 107841469 -10021158 + (TCCA)n Simple_repeat Simple_repeat 1 73 0 288 226 0 0 chr9 107841589 107841642 -10020985 - MER115 DNA AcHobo 0 693 641 * 1154 267 67 16 chr9 107841637 107842072 -10020555 - MER115 DNA AcHobo -236 457 1 2251 113 0 0 chr9 107843199 107843508 -10019119 - AluSx SINE Alu -3 309 1 481 378 54 17 chr9 107843649 107843890 -10018737 - MIR SINE MIR 0 262 13 1392 107 11 0 chr9 107843966 107844153 -10018474 + AluSq SINE Alu 1 189 -124 211 27 27 27 chr9 107844155 107844192 -10018435 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 404 176 0 0 chr9 107844802 107844870 -10017757 - 5S rRNA rRNA -50 71 4 458 220 31 105 chr9 107845512 107845703 -10016924 + MIR SINE MIR 86 262 0 1413 97 0 10 chr9 107845867 107846062 -10016565 - AluSg/x SINE Alu 0 310 118 2249 107 0 3 chr9 107846067 107846375 -10016252 - AluSc SINE Alu -2 307 1 223 407 11 0 chr9 107846376 107846467 -10016160 + L3 LINE CR1 1371 1462 -115 405 324 29 35 chr9 107846955 107847128 -10015499 - MIR SINE MIR -29 233 62 698 138 21 21 chr9 107847137 107847282 -10015345 + MER53 DNA DNA 30 174 -15 392 293 6 46 chr9 107847282 107847412 -10015215 - L1MC4 LINE L1 -1341 6981 6847 2412 83 3 0 chr9 107847412 107847724 -10014903 - AluSp SINE Alu 0 313 1 392 293 6 46 chr9 107847724 107847745 -10014882 - L1MC4 LINE L1 -1475 6847 1977 21 0 0 0 chr9 107847745 107847766 -10014861 + AT_rich Low_complexity Low_complexity 1 21 0 2280 112 0 3 chr9 107847766 107848080 -10014547 - AluSp SINE Alu 0 313 1 1963 133 7 20 chr9 107848082 107848382 -10014245 - AluJb SINE Alu -16 296 1 492 311 44 27 chr9 107849148 107849331 -10013296 + MIR SINE MIR 7 192 -70 1933 138 0 13 chr9 107849347 107849651 -10012976 - AluJo SINE Alu -2 310 11 336 353 38 0 chr9 107849921 107850054 -10012573 - MIR3 SINE MIR -32 176 39 506 246 22 8 chr9 107850605 107850739 -10011888 + MIR SINE MIR 15 150 -112 727 218 5 62 chr9 107850773 107850966 -10011661 - MIR SINE MIR -48 214 33 1474 169 32 0 chr9 107851118 107851367 -10011260 - AluJb SINE Alu -19 293 37 369 336 136 30 chr9 107851587 107851822 -10010805 + MIR SINE MIR 2 261 -1 206 314 128 84 chr9 107851858 107851942 -10010685 + L2 LINE L2 2893 2972 -300 1633 173 24 10 chr9 107851942 107852237 -10010390 - AluJo SINE Alu -13 299 1 206 314 128 84 chr9 107852237 107852426 -10010201 + L2 LINE L2 2972 3178 -94 2825 106 60 60 chr9 107852494 107853042 -10009585 + LTR10A LTR ERV1 8 555 -54 298 336 0 60 chr9 107853085 107853234 -10009393 + MIR3 SINE MIR 63 202 -6 692 295 9 49 chr9 107853435 107853659 -10008968 + MIR SINE MIR 47 261 -1 210 125 0 0 chr9 107853909 107853941 -10008686 + MIR SINE MIR 117 148 -114 292 283 22 22 chr9 107854443 107854581 -10008046 + L1ME LINE L1 5648 5785 -336 1291 128 0 0 chr9 107854869 107855056 -10007571 - AluSg/x SINE Alu -8 304 118 1638 158 15 4 chr9 107855059 107855352 -10007275 + AluSx SINE Alu 13 308 0 27 35 0 0 chr9 107855574 107855603 -10007024 + AT_rich Low_complexity Low_complexity 1 29 0 2063 94 10 13 chr9 107855781 107856079 -10006548 + AluSg SINE Alu 1 297 -13 296 275 101 14 chr9 107856221 107856359 -10006268 - L1MC4a LINE L1 -1932 5876 5727 183 294 70 42 chr9 107856530 107856673 -10005954 + MIR3 SINE MIR 42 188 -20 554 299 74 0 chr9 107856778 107856995 -10005632 - MER63 DNA MER1_type -144 918 686 371 238 162 25 chr9 107857137 107857277 -10005350 + MIR SINE MIR 43 194 -62 212 304 73 62 chr9 107857955 107858176 -10004451 - MIR3 SINE MIR -18 190 23 396 248 119 0 chr9 107858245 107858346 -10004281 - MER81 DNA DNA 0 114 2 216 326 53 0 chr9 107859205 107859289 -10003338 - MIR SINE MIR -63 145 56 2187 128 0 3 chr9 107859531 107859844 -10002783 + AluSx SINE Alu 1 312 0 379 347 119 5 chr9 107859865 107860058 -10002569 + MIR SINE MIR 18 232 -30 289 283 42 88 chr9 107860157 107860397 -10002230 - L2 LINE L2 -176 3096 2868 182 304 0 0 chr9 107860592 107860638 -10001989 - MIR3 SINE MIR -54 154 109 457 273 38 0 chr9 107861079 107861211 -10001416 - MIR SINE MIR -19 243 107 379 279 82 0 chr9 107861631 107861753 -10000874 + L2 LINE L2 3180 3311 -2 923 231 73 3 chr9 107862012 107862315 -10000312 + LTR33 LTR ERVL 197 520 -1 306 219 16 114 chr9 107862613 107862655 -9999972 + MIR3 SINE MIR 61 105 -103 2155 104 21 0 chr9 107862655 107862944 -9999683 - AluSx SINE Alu -17 295 1 306 219 16 114 chr9 107862944 107863024 -9999603 + MIR3 SINE MIR 105 171 -37 239 286 126 50 chr9 107863125 107863244 -9999383 - MIR SINE MIR -65 143 16 * 295 208 214 26 chr9 107863194 107863348 -9999279 + L2 LINE L2 1996 2178 -1136 1081 172 0 0 chr9 107863627 107863801 -9998826 + AluJo SINE Alu 123 296 -16 2167 129 0 0 chr9 107863806 107864117 -9998510 + AluSx SINE Alu 1 311 -1 283 255 217 57 chr9 107864130 107864141 -9998486 + MER5A DNA MER1_type 61 69 -120 2169 95 16 13 chr9 107864141 107864447 -9998180 + AluSx SINE Alu 1 307 -5 283 255 217 57 chr9 107864447 107864541 -9998086 + MER5A DNA MER1_type 69 183 -6 1211 264 188 14 chr9 107864552 107865354 -9997273 + L2 LINE L2 2181 3190 -123 2077 108 20 0 chr9 107865354 107865659 -9996968 - AluSx SINE Alu -1 311 1 1211 264 188 14 chr9 107865659 107865810 -9996817 + L2 LINE L2 3190 3313 0 190 278 19 0 chr9 107866171 107866225 -9996402 - MIR SINE MIR -61 147 93 227 119 48 0 chr9 107866228 107866270 -9996357 - Alu SINE Alu -255 45 2 244 301 67 56 chr9 107867207 107867389 -9995238 + L1MC4 LINE L1 7311 7489 -553 1852 141 21 0 chr9 107867389 107867694 -9994933 + AluSx SINE Alu 1 311 0 244 301 67 56 chr9 107867694 107867909 -9994718 + L1MC4 LINE L1 7489 7825 -217 424 113 0 0 chr9 107867915 107867986 -9994641 - Alu SINE Alu -1 311 241 482 321 36 5 chr9 107868008 107868060 -9994567 + L1MC4 LINE L1 7844 7893 -149 2141 102 31 0 chr9 107868060 107868354 -9994273 + AluSx SINE Alu 1 303 -9 482 321 36 5 chr9 107868354 107868494 -9994133 + L1MC4 LINE L1 7893 8042 0 807 167 7 7 chr9 107868496 107868634 -9993993 + AluJo SINE Alu 1 138 -174 1537 167 80 19 chr9 107868634 107868937 -9993690 + AluJo SINE Alu 3 321 0 1764 161 70 0 chr9 107868949 107869234 -9993393 + AluSx SINE Alu 1 305 -7 243 298 108 50 chr9 107869280 107869538 -9993089 + L2 LINE L2 2812 3084 -188 272 249 17 6 chr9 107870059 107870236 -9992391 + (TG)n Simple_repeat Simple_repeat 1 179 0 320 264 6 0 chr9 107870261 107870435 -9992192 + (TG)n Simple_repeat Simple_repeat 1 175 0 428 240 34 14 chr9 107870606 107870752 -9991875 + MER113 DNA MER1_type? 45 193 -328 301 255 29 10 chr9 107870798 107870900 -9991727 + MER113 DNA MER1_type? 293 396 -125 2219 98 0 0 chr9 107871186 107871483 -9991144 - AluSx SINE Alu -5 307 11 304 253 81 10 chr9 107872373 107872472 -9990155 - MIR SINE MIR -60 148 43 307 286 42 67 chr9 107872796 107873115 -9989512 + L2 LINE L2 2660 3060 -253 239 257 9 83 chr9 107873654 107873763 -9988864 + MIR SINE MIR 12 112 -96 218 323 54 0 chr9 107873975 107874068 -9988559 + L2 LINE L2 3158 3255 -17 186 269 176 46 chr9 107874355 107874383 -9988244 - MIR SINE MIR -81 181 158 1975 124 13 3 chr9 107874383 107874681 -9987946 - AluSx SINE Alu -11 301 1 186 269 176 46 chr9 107874681 107874760 -9987867 - MIR SINE MIR -104 158 60 222 294 29 0 chr9 107874830 107874898 -9987729 - MIR SINE MIR -115 147 78 222 339 28 28 chr9 107875178 107875358 -9987269 + (CGTG)n Simple_repeat Simple_repeat 1 180 0 421 250 76 23 chr9 107875694 107875826 -9986801 - MIR3 SINE MIR -54 154 16 186 43 0 0 chr9 107876289 107876312 -9986315 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 353 305 89 48 chr9 107876314 107876583 -9986044 - L2 LINE L2 -3 3310 3031 209 271 212 18 chr9 107876595 107876765 -9985862 - L2 LINE L2 -385 2929 2727 206 317 79 0 chr9 107878011 107878112 -9984515 + MIR3 SINE MIR 74 182 -26 207 0 0 0 chr9 107878224 107878247 -9984380 + (CAG)n Simple_repeat Simple_repeat 2 24 0 243 279 47 0 chr9 107878386 107878472 -9984155 - MIR3 SINE MIR -24 184 95 265 229 16 0 chr9 107879012 107879073 -9983554 + MIR SINE MIR 86 147 -61 306 260 115 72 chr9 107880143 107880448 -9982179 + L2 LINE L2 2712 3113 -159 346 235 35 0 chr9 107881161 107881246 -9981381 + MIR SINE MIR 34 121 -87 213 94 0 0 chr9 107881570 107881602 -9981025 + (CA)n Simple_repeat Simple_repeat 2 33 0 183 100 0 0 chr9 107881928 107881958 -9980669 + (GGGA)n Simple_repeat Simple_repeat 4 33 0 277 349 28 0 chr9 107882154 107882260 -9980367 - MIR3 SINE MIR -52 156 48 196 220 0 68 chr9 107882673 107882732 -9979895 + L2 LINE L2 3197 3251 -21 275 257 229 0 chr9 107882883 107882988 -9979639 + MIR3 SINE MIR 9 137 -71 607 169 7 81 chr9 107883112 107883248 -9979379 + FLAM_C SINE Alu 1 126 -7 315 0 0 0 chr9 107883248 107883283 -9979344 + (CA)n Simple_repeat Simple_repeat 2 36 0 2295 85 6 25 chr9 107883524 107883843 -9978784 + AluSq SINE Alu 1 313 0 828 127 0 0 chr9 107883899 107884017 -9978610 + AluJo/FLAM SINE Alu 1 118 -184 2424 75 0 3 chr9 107884017 107884322 -9978305 - AluSg SINE Alu -6 304 1 22 56 0 0 chr9 107884324 107884360 -9978267 + AT_rich Low_complexity Low_complexity 1 36 0 2263 105 3 3 chr9 107884591 107884904 -9977723 - AluSp SINE Alu 0 313 1 190 0 67 0 chr9 107884910 107884940 -9977687 + (TTA)n Simple_repeat Simple_repeat 2 33 0 2077 108 21 0 chr9 107884942 107885228 -9977399 - AluSx SINE Alu -20 292 1 973 179 0 17 chr9 107885236 107885409 -9977218 - FRAM SINE Alu -6 170 1 21 0 0 0 chr9 107885452 107885473 -9977154 + AT_rich Low_complexity Low_complexity 1 21 0 1252 169 105 7 chr9 107885473 107885769 -9976858 + L1MB2 LINE L1 5840 6164 -7 40 21 0 0 chr9 107885769 107885816 -9976811 + AT_rich Low_complexity Low_complexity 1 47 0 1872 152 0 30 chr9 107885971 107886274 -9976353 + AluJo SINE Alu 3 296 -16 29 47 0 0 chr9 107886393 107886436 -9976191 + AT_rich Low_complexity Low_complexity 1 43 0 1444 153 161 0 chr9 107886498 107886759 -9975868 + AluSx SINE Alu 1 303 -9 591 189 22 99 chr9 107886881 107886954 -9975673 + L1M4 LINE L1 4254 4331 -1815 2192 122 0 3 chr9 107886954 107887265 -9975362 - AluSg SINE Alu 0 310 1 591 189 22 99 chr9 107887265 107887413 -9975214 + L1M4 LINE L1 4331 4458 -1688 920 144 0 0 chr9 107887481 107887620 -9975007 - AluJb SINE Alu -39 273 135 296 141 51 39 chr9 107887620 107887698 -9974929 + Charlie5 DNA MER1_type 2546 2624 0 196 171 0 0 chr9 107888650 107888685 -9973942 - MIR SINE MIR -109 153 119 182 323 165 23 chr9 107888688 107888821 -9973806 - L2 LINE L2 0 3272 3121 2016 147 3 3 chr9 107888856 107889168 -9973459 + AluSx SINE Alu 1 312 0 333 99 56 14 chr9 107889174 107889245 -9973382 + GA-rich Low_complexity Low_complexity 4 77 0 295 184 28 37 chr9 107889223 107889332 -9973295 + G-rich Low_complexity Low_complexity 3 110 0 * 2315 88 3 0 chr9 107889396 107889704 -9972923 + AluSp SINE Alu 3 311 -2 813 224 4 160 chr9 107889707 107889970 -9972657 + LTR8 LTR ERV1 33 244 -447 848 223 117 74 chr9 107890154 107890616 -9972011 + LTR8A LTR ERV1 246 727 0 319 358 91 0 chr9 107890626 107890802 -9971825 - L2 LINE L2 -288 3025 2834 210 279 29 15 chr9 107890916 107890984 -9971643 + MIR3 SINE MIR 109 177 -31 249 337 82 31 chr9 107890996 107891192 -9971435 + L2 LINE L2 2992 3197 -75 389 323 24 0 chr9 107891516 107891643 -9970984 + MIR SINE MIR 57 186 -76 277 229 62 31 chr9 107891854 107891950 -9970677 - MIR SINE MIR -77 131 33 436 316 193 12 chr9 107892292 107892536 -9970091 + L2 LINE L2 2985 3272 0 903 182 32 0 chr9 107892633 107892820 -9969807 + LTR41 LTR ERVL 13 205 -568 592 213 176 28 chr9 107893018 107893234 -9969393 + LTR41 LTR ERVL 519 766 -7 208 397 0 0 chr9 107893558 107893636 -9968991 - MIR SINE MIR -88 120 43 334 253 36 0 chr9 107893979 107894062 -9968565 - MIR SINE MIR -114 148 63 183 336 17 43 chr9 107895112 107895228 -9967399 - MIR3 SINE MIR -48 160 48 729 216 20 0 chr9 107895443 107895591 -9967036 + MIR SINE MIR 38 188 -74 2427 68 0 0 chr9 107895637 107895946 -9966681 + AluSc SINE Alu 1 309 0 326 263 63 0 chr9 107896158 107896253 -9966374 - MIR SINE MIR -99 163 63 258 81 0 0 chr9 107896962 107896999 -9965628 + (CCCCCG)n Simple_repeat Simple_repeat 6 42 0 27 29 0 0 chr9 107897029 107897063 -9965564 + GC_rich Low_complexity Low_complexity 1 34 0 21 71 0 0 chr9 107897202 107897244 -9965383 + GC_rich Low_complexity Low_complexity 1 42 0 254 294 193 8 chr9 107897549 107897668 -9964959 + MIR SINE MIR 65 205 -57 389 311 57 71 chr9 107897670 107897799 -9964828 + L1MC4a LINE L1 5687 5813 -1995 2453 63 3 13 chr9 107897799 107898114 -9964513 + AluSp SINE Alu 1 312 -1 389 311 57 71 chr9 107898114 107898196 -9964431 + L1MC4a LINE L1 5813 5895 -1913 1555 131 23 102 chr9 107898201 107898545 -9964082 + AluYb8 SINE Alu 1 317 -1 349 240 199 45 chr9 107898576 107898797 -9963830 + L1ME4a LINE L1 5629 5883 -287 2065 62 3 81 chr9 107898833 107899171 -9963456 + AluSx SINE Alu 1 314 0 1743 124 4 4 chr9 107899174 107899433 -9963194 + AluSx SINE Alu 1 259 -53 2144 111 3 7 chr9 107899565 107899871 -9962756 - AluSx SINE Alu -7 305 1 318 250 69 69 chr9 107899878 107899977 -9962650 + L1ME4a LINE L1 5993 6095 -26 2093 109 3 3 chr9 107899977 107900300 -9962327 - AluSx SINE Alu 0 323 1 318 250 69 69 chr9 107900300 107900315 -9962312 + L1ME4a LINE L1 6094 6108 -13 39 22 0 0 chr9 107900315 107900361 -9962266 + AT_rich Low_complexity Low_complexity 1 46 0 2471 69 0 0 chr9 107900402 107900708 -9961919 - AluY SINE Alu -5 306 1 417 227 126 8 chr9 107901496 107901615 -9961012 - MIR SINE MIR -20 242 110 285 378 81 0 chr9 107901909 107902081 -9960546 - MIR3 SINE MIR -4 204 19 386 289 80 27 chr9 107903112 107903299 -9959328 - MIR SINE MIR -50 212 16 325 157 43 207 chr9 107903599 107903739 -9958888 - MER45A DNA AcHobo -4 174 58 2191 119 0 3 chr9 107904162 107904472 -9958155 - AluSx SINE Alu -3 309 1 518 204 19 0 chr9 107904475 107904578 -9958049 - FLAM_C SINE Alu -9 134 30 2274 70 0 7 chr9 107904918 107905216 -9957411 + AluSq SINE Alu 1 296 -17 335 360 40 0 chr9 107906217 107906367 -9956260 + MIR SINE MIR 36 191 -71 2183 78 3 7 chr9 107906593 107906889 -9955738 + AluSq SINE Alu 6 300 -13 28 86 0 0 chr9 107906953 107907023 -9955604 + AT_rich Low_complexity Low_complexity 1 70 0 180 0 0 0 chr9 107907033 107907053 -9955574 + (TA)n Simple_repeat Simple_repeat 2 21 0 331 361 40 20 chr9 107907078 107907280 -9955347 - MIR SINE MIR -42 220 15 214 220 61 121 chr9 107907902 107908034 -9954593 + MIR SINE MIR 32 155 -107 587 299 103 46 chr9 107908303 107908671 -9953956 - L2 LINE L2 -121 3192 2804 2130 100 3 13 chr9 107908968 107909267 -9953360 - AluSg SINE Alu -14 296 1 1027 94 0 7 chr9 107909267 107909405 -9953222 - AluSq/x SINE Alu -175 137 1 198 371 30 30 chr9 107909528 107909695 -9952932 + L2 LINE L2 3122 3288 -25 209 255 174 20 chr9 107910273 107910371 -9952256 - MIR SINE MIR -102 160 48 275 294 20 10 chr9 107910432 107910534 -9952093 + MIR SINE MIR 155 257 -5 476 286 9 9 chr9 107910656 107910784 -9951843 + MIR SINE MIR 34 160 -59 2185 117 3 0 chr9 107910785 107911093 -9951534 + AluSx SINE Alu 1 309 -3 1076 127 70 0 chr9 107911129 107911287 -9951340 + AluSx SINE Alu 1 169 -143 813 128 0 30 chr9 107911454 107911587 -9951040 + AluSx SINE Alu 175 303 -9 2292 87 7 0 chr9 107911595 107911893 -9950734 + AluSp SINE Alu 1 300 -13 544 71 0 0 chr9 107911917 107912002 -9950625 + Alu SINE Alu 225 309 -1 267 333 63 0 chr9 107912002 107912113 -9950514 - MIR3 SINE MIR -80 128 11 316 335 90 26 chr9 107912516 107912671 -9949956 - MIR SINE MIR -97 165 1 249 333 67 44 chr9 107912671 107912802 -9949825 + MIR SINE MIR 85 218 -44 220 330 29 48 chr9 107913658 107913761 -9948866 - MIR SINE MIR -113 149 49 203 283 58 64 chr9 107914147 107914320 -9948307 - MIR3 SINE MIR -24 184 13 216 208 39 26 chr9 107914505 107914582 -9948045 + G-rich Low_complexity Low_complexity 6 83 0 323 174 10 71 chr9 107914963 107915061 -9947566 + MER53 DNA DNA 1 92 -97 239 224 17 0 chr9 107915135 107915193 -9947434 - MIR SINE MIR -190 72 14 800 100 0 0 chr9 107915409 107915519 -9947108 - AluSx SINE Alu -11 301 192 1125 86 0 0 chr9 107915519 107915659 -9946968 - AluSx SINE Alu -172 140 1 708 303 109 21 chr9 107916450 107916872 -9945755 + L2 LINE L2 2855 3313 0 1480 196 46 7 chr9 107917279 107917394 -9945233 + AluJb SINE Alu 6 115 -197 396 0 0 0 chr9 107917394 107917438 -9945189 + (TAAAA)n Simple_repeat Simple_repeat 2 45 0 1480 196 46 7 chr9 107917438 107917603 -9945024 + AluJb SINE Alu 115 297 -15 2138 123 7 0 chr9 107917668 107917978 -9944649 - AluSx SINE Alu 0 312 1 445 246 22 72 chr9 107918259 107918397 -9944230 + L2 LINE L2 3140 3270 -2 355 195 69 23 chr9 107918393 107918480 -9944147 - MIR SINE MIR -95 167 77 * 194 317 17 0 chr9 107918653 107918713 -9943914 - MIR SINE MIR -61 147 87 330 275 92 8 chr9 107918798 107918918 -9943709 + MIR SINE MIR 23 152 -56 545 292 118 0 chr9 107918970 107919165 -9943462 + MIR SINE MIR 12 229 -33 1090 135 96 129 chr9 107919770 107919898 -9942729 + MER33 DNA MER1_type 2 133 -2452 2143 84 26 16 chr9 107919898 107920207 -9942420 + AluSx SINE Alu 1 312 0 1090 135 96 129 chr9 107920207 107920412 -9942215 + MER33 DNA MER1_type 133 324 0 184 268 0 0 chr9 107921369 107921410 -9941217 + MIR SINE MIR 109 149 -113 1952 115 3 59 chr9 107921569 107921718 -9940909 + AluSg SINE Alu 1 124 -186 2096 85 0 4 chr9 107921718 107921990 -9940637 + AluSx SINE Alu 29 299 -13 1952 115 3 59 chr9 107921990 107922162 -9940465 + AluSg SINE Alu 124 304 -6 519 187 0 0 chr9 107922356 107922463 -9940164 + (CA)n Simple_repeat Simple_repeat 2 108 0 428 318 72 36 chr9 107922767 107922940 -9939687 - MIR SINE MIR -48 214 32 2238 105 0 0 chr9 107922940 107923246 -9939381 - AluSg SINE Alu -4 306 1 428 318 72 36 chr9 107923246 107923267 -9939360 - MIR SINE MIR -230 32 13 557 135 0 40 chr9 107923597 107923723 -9938904 + (TTTC)n Simple_repeat Simple_repeat 2 122 0 1881 166 0 0 chr9 107923743 107924039 -9938588 - AluJb SINE Alu -16 296 1 439 308 152 5 chr9 107924300 107924571 -9938056 + MIR SINE MIR 25 258 -4 269 315 109 60 chr9 107926293 107926560 -9936067 - L2 LINE L2 -179 3093 2814 430 242 8 32 chr9 107926846 107926970 -9935657 - MIR3 SINE MIR -9 199 79 318 235 122 15 chr9 107927411 107927580 -9935047 + MIR SINE MIR 37 262 0 448 322 60 0 chr9 107927583 107927732 -9934895 + MIR SINE MIR 13 170 -92 229 299 0 30 chr9 107927944 107928011 -9934616 - MIR SINE MIR -80 182 118 219 304 13 38 chr9 107928586 107928665 -9933962 - MIR SINE MIR -63 145 69 * 379 226 57 38 chr9 107928664 107928770 -9933857 - L2 LINE L2 0 3272 3165 * 422 272 234 5 chr9 107928756 107929221 -9933406 + L2 LINE L2 2680 3270 -43 1102 133 6 0 chr9 107929405 107929570 -9933057 - AluSg/x SINE Alu -13 299 134 2169 108 0 10 chr9 107929570 107929736 -9932891 - AluSx SINE Alu -10 302 136 2231 99 7 0 chr9 107929736 107930039 -9932588 - AluSc SINE Alu -4 305 1 2474 52 0 13 chr9 107930040 107930348 -9932279 - AluY SINE Alu -7 304 1 2169 108 0 10 chr9 107930348 107930484 -9932143 - AluSx SINE Alu -175 137 1 320 286 218 17 chr9 107930495 107930844 -9931783 - L2 LINE L2 -609 2705 2287 2186 100 3 3 chr9 107930977 107931276 -9931351 + AluSq SINE Alu 1 299 -14 2298 104 3 0 chr9 107931387 107931696 -9930931 + AluSp SINE Alu 3 312 -1 225 290 16 0 chr9 107932410 107932472 -9930155 + L2 LINE L2 3197 3259 -54 214 350 0 0 chr9 107933432 107933492 -9929135 - L2 LINE L2 -3 3269 3210 202 268 93 21 chr9 107934324 107934421 -9928206 - L2 LINE L2 -19 3253 3150 429 321 25 25 chr9 107934708 107934867 -9927760 + MIR SINE MIR 84 242 -20 264 273 172 0 chr9 107935664 107935763 -9926864 - MIR SINE MIR -65 143 28 765 122 81 0 chr9 107936172 107936295 -9926332 - FLAM_C SINE Alu 0 133 1 181 289 144 21 chr9 107936337 107936415 -9926212 + L2 LINE L2 3155 3249 -23 2275 107 0 3 chr9 107936415 107936724 -9925903 - AluSx SINE Alu -4 308 1 181 289 144 21 chr9 107936724 107936742 -9925885 + L2 LINE L2 3249 3263 -9 2070 96 48 10 chr9 107936977 107937270 -9925357 - AluSx SINE Alu -8 304 1 200 196 22 22 chr9 107937704 107937750 -9924877 - MIR SINE MIR -104 158 113 326 295 0 29 chr9 107940811 107940916 -9921711 - MIR SINE MIR -98 164 63 263 295 13 13 chr9 107940963 107941041 -9921586 - MIR SINE MIR -78 184 107 195 305 0 105 chr9 107941795 107941900 -9920727 - L2 LINE L2 -12 3301 3208 206 357 89 9 chr9 107941944 107942056 -9920571 - MIR SINE MIR -126 136 16 285 364 16 0 chr9 107942495 107942624 -9920003 - MIR SINE MIR -52 210 80 410 269 29 47 chr9 107943554 107943725 -9918902 - L2 LINE L2 -195 3077 2910 1939 94 0 92 chr9 107944612 107944940 -9917687 + AluSc SINE Alu 1 298 -11 374 316 131 0 chr9 107944950 107945118 -9917509 - MIR SINE MIR -17 245 56 362 344 42 88 chr9 107945126 107945411 -9917216 + L2 LINE L2 2977 3248 -24 327 366 44 15 chr9 107945977 107946182 -9916445 + MIR SINE MIR 29 239 -23 2446 59 10 0 chr9 107946520 107946823 -9915804 + AluY SINE Alu 1 306 -5 321 260 30 10 chr9 107946899 107946999 -9915628 - MIR SINE MIR -74 134 33 386 260 110 32 chr9 107947454 107947608 -9915019 + MIR SINE MIR 17 182 -80 271 129 0 176 chr9 107948985 107949022 -9913605 - MIR SINE MIR -115 147 132 2483 36 13 7 chr9 107949022 107949331 -9913296 + AluY SINE Alu 1 311 0 271 129 0 176 chr9 107949331 107949378 -9913249 - MIR SINE MIR -130 132 78 203 280 192 24 chr9 107949530 107949655 -9912972 + MIR SINE MIR 107 252 -10 257 339 83 0 chr9 107950129 107950297 -9912330 + L1ME LINE L1 5719 5900 -221 1879 160 0 13 chr9 107950297 107950603 -9912024 - AluSx SINE Alu -10 302 1 785 164 0 0 chr9 107950604 107950732 -9911895 + AluSg/x SINE Alu 171 298 -14 366 296 130 12 chr9 107951894 107952056 -9910571 - MIR SINE MIR -70 192 12 219 323 0 0 chr9 107952076 107952138 -9910489 - MIR SINE MIR 0 262 201 309 356 48 0 chr9 107952193 107952339 -9910288 - MIR SINE MIR -77 185 33 398 339 22 39 chr9 107952841 107953021 -9909606 - MIR SINE MIR -74 188 12 205 287 115 0 chr9 107953212 107953299 -9909328 - L2 LINE L2 -273 3040 2944 319 259 12 0 chr9 107953765 107953846 -9908781 - L2 LINE L2 0 3313 3232 296 176 37 37 chr9 107953881 107953989 -9908638 + L1MB7 LINE L1 4156 4263 -1883 2291 104 0 0 chr9 107953989 107954297 -9908330 - AluSq SINE Alu -5 308 1 189 0 0 0 chr9 107954297 107954318 -9908309 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1893 149 3 0 chr9 107954318 107954600 -9908027 - AluSx SINE Alu -29 283 1 871 163 0 12 chr9 107954613 107954843 -9907784 + AluSx SINE Alu 4 308 -2 4531 161 46 35 chr9 107954847 107955394 -9907233 + L1MB7 LINE L1 4272 4812 -1372 1458 125 9 5 chr9 107955394 107955610 -9907017 + AluSx SINE Alu 78 294 -18 4531 161 46 35 chr9 107955610 107955973 -9906654 + L1MB7 LINE L1 4812 5170 -1014 2032 156 0 0 chr9 107955973 107956281 -9906346 + AluJo SINE Alu 5 312 0 4531 161 46 35 chr9 107956281 107957075 -9905552 + L1MB7 LINE L1 5170 5993 -191 2172 142 35 14 chr9 107957075 107957442 -9905185 + THE1C LTR MaLR 1 375 0 4531 161 46 35 chr9 107957442 107957627 -9905000 + L1MB7 LINE L1 5993 6175 -9 545 302 79 3 chr9 107957630 107957995 -9904632 - L2 LINE L2 -157 3156 2764 351 304 118 7 chr9 107958631 107958766 -9903861 - MIR SINE MIR -88 174 25 1122 278 93 37 chr9 107959051 107959515 -9903112 - L2 LINE L2 -1 3312 2823 21 0 0 0 chr9 107959763 107959784 -9902843 + AT_rich Low_complexity Low_complexity 1 21 0 797 176 0 22 chr9 107960333 107960469 -9902158 + FLAM_C SINE Alu 1 133 0 266 273 94 16 chr9 107961530 107961658 -9900969 - L2 LINE L2 -263 3050 2913 243 233 68 0 chr9 107961739 107961812 -9900815 + MIR SINE MIR 107 185 -77 2363 69 6 22 chr9 107962406 107962723 -9899904 + AluSx SINE Alu 1 312 0 529 118 324 2 chr9 107962807 107962950 -9899677 - MER20 DNA MER1_type -45 174 1 212 267 17 0 chr9 107962967 107963027 -9899600 - MER5A DNA MER1_type -121 68 8 892 173 0 0 chr9 107963913 107964046 -9898581 + FLAM_A SINE Alu 1 133 0 188 350 94 0 chr9 107964369 107964486 -9898141 - MIR3 SINE MIR -38 170 43 478 296 66 33 chr9 107964854 107965067 -9897560 - MIR SINE MIR -12 250 31 661 121 164 17 chr9 107965569 107965685 -9896942 - FLAM_A SINE Alu 0 133 1 361 271 101 8 chr9 107965986 107966115 -9896512 + L2 LINE L2 3171 3311 -2 311 268 14 0 chr9 107966534 107966605 -9896022 - L2 LINE L2 0 3313 3242 392 298 85 0 chr9 107967041 107967182 -9895445 - MIR SINE MIR -8 254 102 570 234 149 34 chr9 107967582 107967706 -9894921 - L1ME3A LINE L1 -113 6057 5949 2148 94 0 17 chr9 107967706 107968005 -9894622 - AluSx SINE Alu -18 294 1 570 234 149 34 chr9 107968005 107968115 -9894512 - L1ME3A LINE L1 -221 5949 5796 226 326 49 42 chr9 107968819 107968963 -9893664 - MIR SINE MIR -117 145 1 255 325 200 7 chr9 107969267 107969547 -9893080 - L2 LINE L2 -66 3206 2873 479 312 52 0 chr9 107970029 107970229 -9892398 - MIR SINE MIR -11 251 41 308 319 57 44 chr9 107973100 107973291 -9889336 + MIR3 SINE MIR 6 193 -58 451 323 46 28 chr9 107973786 107974003 -9888624 + MIR SINE MIR 28 248 -14 220 316 51 19 chr9 107974026 107974177 -9888450 + MIR SINE MIR 53 243 -19 263 175 88 0 chr9 107975258 107975315 -9887312 - MIR SINE MIR -90 172 111 255 217 58 0 chr9 107975342 107975411 -9887216 + MIR SINE MIR 81 153 -109 286 149 0 0 chr9 107975520 107975567 -9887060 - MIR SINE MIR -147 115 69 202 208 0 75 chr9 107975916 107975969 -9886658 + MIR SINE MIR 95 143 -65 22 35 0 0 chr9 107976099 107976128 -9886499 + AT_rich Low_complexity Low_complexity 1 29 0 1837 125 16 47 chr9 107976134 107976454 -9886173 + AluSx SINE Alu 1 310 -2 940 167 6 18 chr9 107976454 107976622 -9886005 + AluSq SINE Alu 134 299 -14 615 202 26 0 chr9 107976622 107976736 -9885891 - AluJo/FLAM SINE Alu -194 118 2 29 28 0 0 chr9 107978165 107978201 -9884426 + GC_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr9 107978427 107978449 -9884178 + GC_rich Low_complexity Low_complexity 1 22 0 27 81 0 0 chr9 107978581 107978643 -9883984 + GC_rich Low_complexity Low_complexity 1 62 0 310 355 119 16 chr9 107979565 107979775 -9882852 - L2 LINE L2 -350 2964 2777 2220 84 3 0 chr9 107979775 107980074 -9882553 - AluSq SINE Alu -2 311 12 310 355 119 16 chr9 107980074 107980300 -9882327 - L2 LINE L2 -537 2777 2483 208 328 16 0 chr9 107980445 107980506 -9882121 - MIR SINE MIR -114 148 87 185 245 0 0 chr9 107980890 107980939 -9881688 + MIR SINE MIR 46 94 -168 193 333 37 0 chr9 107981120 107981201 -9881426 + MIR SINE MIR 123 206 -56 305 337 57 21 chr9 107981301 107981494 -9881133 - L2 LINE L2 -147 3166 2967 225 0 0 0 chr9 107981612 107981637 -9880990 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 451 102 0 0 chr9 107981644 107981703 -9880924 - AluSg/x SINE Alu -38 272 214 243 0 0 0 chr9 107981794 107981821 -9880806 + (TG)n Simple_repeat Simple_repeat 2 28 0 1989 102 11 0 chr9 107981821 107982104 -9880523 - AluSq SINE Alu -27 286 1 2020 77 4 0 chr9 107982112 107982373 -9880254 - AluSp SINE Alu -7 306 45 435 299 86 20 chr9 107982376 107982573 -9880054 - L2 LINE L2 -602 2712 2503 268 333 128 0 chr9 107982870 107982987 -9879640 + L2 LINE L2 3137 3268 -4 1382 134 5 14 chr9 107982987 107983204 -9879423 + AluJb SINE Alu 7 221 -91 398 322 17 0 chr9 107983222 107983337 -9879290 - L1MC4 LINE L1 -1311 6731 6615 742 114 8 65 chr9 107983338 107983461 -9879166 + FLAM_C SINE Alu 2 117 -26 26 30 0 0 chr9 107983461 107983494 -9879133 + AT_rich Low_complexity Low_complexity 1 33 0 1898 122 6 73 chr9 107983512 107983657 -9878970 + AluSx SINE Alu 1 113 -199 2049 125 0 0 chr9 107983657 107983953 -9878674 + AluSx SINE Alu 1 296 -16 1898 122 6 73 chr9 107983953 107984136 -9878491 + AluSx SINE Alu 113 307 -5 22 35 0 0 chr9 107984175 107984204 -9878423 + AT_rich Low_complexity Low_complexity 1 29 0 306 148 0 0 chr9 107984568 107984622 -9878005 + (GGGA)n Simple_repeat Simple_repeat 1 54 0 633 266 155 39 chr9 107985125 107985460 -9877167 - L1ME LINE L1 -488 5633 5260 1867 104 75 0 chr9 107985495 107985775 -9876852 - AluSq SINE Alu -12 301 1 1819 164 7 0 chr9 107985799 107986104 -9876523 - AluJo SINE Alu -3 309 3 1181 176 45 0 chr9 107986250 107986449 -9876178 + MER3 DNA MER1_type 1 208 -1 333 317 10 0 chr9 107986515 107986619 -9876008 + MIR SINE MIR 81 185 -77 193 56 28 28 chr9 107987007 107987043 -9875584 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 265 304 49 0 chr9 107987169 107987271 -9875356 - L2 LINE L2 -181 3091 2985 1614 146 6 78 chr9 107987418 107987569 -9875058 + AluSq SINE Alu 1 118 -195 2325 80 10 0 chr9 107987569 107987871 -9874756 + AluSx SINE Alu 1 305 -7 1614 146 6 78 chr9 107987871 107988040 -9874587 + AluSq SINE Alu 118 298 -15 189 213 98 16 chr9 107988049 107988110 -9874517 - L2 LINE L2 -533 2781 2716 344 261 9 70 chr9 107988261 107988376 -9874251 + MIR SINE MIR 47 154 -108 1301 136 107 37 chr9 107988918 107989124 -9873503 - L1MA4 LINE L1 0 6300 6051 1954 158 0 3 chr9 107989124 107989435 -9873192 - AluSx SINE Alu 0 312 3 1301 136 107 37 chr9 107989435 107989532 -9873095 - L1MA4 LINE L1 -249 6051 5962 351 289 69 28 chr9 107989571 107989803 -9872824 + MIR SINE MIR 1 254 -8 2202 103 13 0 chr9 107989805 107990106 -9872521 - AluSx SINE Alu -7 305 1 1909 120 32 0 chr9 107990108 107990391 -9872236 - AluSg SINE Alu -18 292 1 216 279 16 0 chr9 107990391 107990452 -9872175 + MIR SINE MIR 164 225 -37 328 214 57 0 chr9 107990457 107990527 -9872100 - L2 LINE L2 -9 3304 3231 1928 116 7 4 chr9 107990663 107990940 -9871687 - AluSx SINE Alu -34 278 1 190 279 0 0 chr9 107991060 107991103 -9871524 - MIR SINE MIR -103 159 117 * 201 288 17 0 chr9 107991101 107991160 -9871467 + L2 LINE L2 3211 3270 -2 767 279 65 28 chr9 107991339 107991586 -9871041 - MIR SINE MIR -1 261 6 1316 116 0 77 chr9 107991601 107991794 -9870833 - AluSg/x SINE Alu -1 311 137 2169 104 3 10 chr9 107991794 107992103 -9870524 - AluY SINE Alu -4 307 1 1316 116 0 77 chr9 107992103 107992142 -9870485 - AluSg/x SINE Alu -175 137 97 25 31 0 0 chr9 107992678 107992710 -9869917 + AT_rich Low_complexity Low_complexity 1 32 0 1272 147 118 0 chr9 107993156 107993367 -9869260 + MER46A DNA MER2_type 1 236 0 192 231 165 74 chr9 107993432 107993553 -9869074 - MIR3 SINE MIR -71 137 6 240 247 78 26 chr9 107994716 107994793 -9867834 + L2 LINE L2 3178 3258 -14 207 0 0 0 chr9 107994793 107994816 -9867811 + (TGAA)n Simple_repeat Simple_repeat 4 26 0 245 366 92 30 chr9 107994927 107995091 -9867536 - L2 LINE L2 0 3272 3099 3661 69 8 6 chr9 107996767 107997262 -9865365 + LTR13 LTR ERVK 512 1007 0 692 71 0 0 chr9 107997262 107997347 -9865280 - AluS SINE Alu -226 86 2 277 247 0 41 chr9 107997347 107997420 -9865207 + L2 LINE L2 2686 2755 -559 857 141 0 22 chr9 107997696 107997831 -9864796 - FLAM_C SINE Alu -1 132 1 255 329 55 48 chr9 107998148 107998294 -9864333 + MIR3 SINE MIR 13 159 -49 311 240 120 87 chr9 107998540 107998656 -9863971 - MER113 DNA MER1_type? -184 337 209 2089 106 0 3 chr9 107998656 107998974 -9863653 - AluSq SINE Alu 0 318 2 311 240 120 87 chr9 107998974 107999064 -9863563 - MER113 DNA MER1_type? -312 209 123 1076 160 75 26 chr9 107999128 107999396 -9863231 + MER33 DNA MER1_type 44 324 0 1120 147 0 0 chr9 107999397 107999567 -9863060 - AluJo/FRAM SINE Alu -9 303 134 1477 148 0 8 chr9 107999567 107999810 -9862817 - AluSq SINE Alu -5 308 68 658 264 212 44 chr9 107999916 108000162 -9862465 - MLT1F LTR MaLR -65 477 274 1920 128 24 0 chr9 108000162 108000451 -9862176 + AluSx SINE Alu 1 296 -16 658 264 212 44 chr9 108000451 108000591 -9862036 - MLT1F LTR MaLR -268 274 26 24 0 0 0 chr9 108000592 108000616 -9862011 + AT_rich Low_complexity Low_complexity 1 24 0 911 201 130 78 chr9 108000620 108000904 -9861723 - AluJo SINE Alu 0 302 4 436 301 7 26 chr9 108001264 108001417 -9861210 - MIR3 SINE MIR -58 150 1 1808 120 25 4 chr9 108001483 108001782 -9860845 - AluJo SINE Alu 0 305 1 189 240 0 0 chr9 108001786 108001832 -9860795 - MIR SINE MIR -60 148 102 353 264 115 20 chr9 108002919 108003067 -9859560 + MIR SINE MIR 30 191 -71 792 113 0 0 chr9 108003069 108003175 -9859452 + AluJb SINE Alu 2 107 -205 833 137 61 91 chr9 108003533 108003651 -9858976 + MER21A LTR ERV1 71 191 -740 1829 157 3 0 chr9 108003651 108003937 -9858690 - AluJo SINE Alu -21 291 5 833 137 61 91 chr9 108003937 108003954 -9858673 + MER21A LTR ERV1 191 207 -724 4108 33 2 37 chr9 108003954 108004466 -9858161 - L1PA3 LINE L1 0 6155 5662 833 137 61 91 chr9 108004466 108004526 -9858101 + MER21A LTR ERV1 207 261 -670 * 2953 159 37 21 chr9 108004525 108005042 -9857585 + MER21A LTR ERV1 368 892 -39 420 314 98 73 chr9 108005059 108005182 -9857445 - L2 LINE L2 -28 3244 3126 2230 77 3 10 chr9 108005182 108005479 -9857148 + AluSx SINE Alu 1 295 -17 420 314 98 73 chr9 108005479 108005841 -9856786 - L2 LINE L2 -146 3126 2726 2315 88 0 3 chr9 108005871 108006179 -9856448 + AluSq SINE Alu 1 307 -6 2187 107 10 0 chr9 108006182 108006491 -9856136 + AluSx SINE Alu 1 312 0 347 271 97 7 chr9 108006574 108006718 -9855909 - MIR3 SINE MIR -32 176 20 296 283 92 77 chr9 108007192 108007464 -9855163 - L1ME LINE L1 -452 5669 5394 2022 134 3 10 chr9 108007509 108007823 -9854804 + AluSx SINE Alu 1 312 0 332 189 38 47 chr9 108007823 108007929 -9854698 + L1ME1 LINE L1 5193 5297 -849 951 176 0 28 chr9 108008005 108008187 -9854440 + AluJo SINE Alu 120 296 -16 1835 133 3 11 chr9 108008189 108008509 -9854118 + AluJb SINE Alu 1 318 0 2278 79 7 3 chr9 108008509 108008813 -9853814 + AluSc SINE Alu 1 305 -4 1922 169 56 119 chr9 108008816 108008901 -9853726 + L1ME1 LINE L1 5354 5443 -723 2019 145 0 0 chr9 108008901 108009198 -9853429 + AluSx SINE Alu 3 299 -13 1922 169 56 119 chr9 108009198 108009519 -9853108 + L1ME1 LINE L1 5443 5709 -457 1778 142 31 10 chr9 108009519 108009808 -9852819 + AluSx SINE Alu 1 295 -17 1922 169 56 119 chr9 108009808 108010029 -9852598 + L1ME1 LINE L1 5709 5942 -224 949 128 40 0 chr9 108010153 108010302 -9852325 + AluSp SINE Alu 121 275 -38 270 358 18 18 chr9 108010331 108010496 -9852131 + L2 LINE L2 3098 3262 -51 1798 171 46 76 chr9 108010540 108011015 -9851612 + MLT1D LTR MaLR 1 461 -44 320 272 152 0 chr9 108011413 108011538 -9851089 + MIR3 SINE MIR 4 147 -61 256 333 12 8 chr9 108011762 108011885 -9850742 - MIR SINE MIR -52 210 87 292 275 115 4 chr9 108012131 108012249 -9850378 + MIR SINE MIR 16 144 -67 186 240 40 0 chr9 108012552 108012602 -9850025 - MIR SINE MIR -103 159 108 223 174 43 43 chr9 108012864 108012933 -9849694 - MIR3 SINE MIR -54 154 86 236 242 0 15 chr9 108012984 108013050 -9849577 - MLT1C LTR MaLR 0 467 403 926 133 0 0 chr9 108013050 108013185 -9849442 + AluJo SINE Alu 1 135 -177 1815 161 0 7 chr9 108013185 108013484 -9849143 + AluJo SINE Alu 1 297 -15 494 130 0 0 chr9 108013870 108013939 -9848688 + AluJ/FLAM SINE Alu 11 79 -233 1943 128 17 0 chr9 108014040 108014330 -9848297 - AluSx SINE Alu -17 295 1 1607 181 0 13 chr9 108014332 108014631 -9847996 - AluJb SINE Alu -17 295 1 304 217 78 61 chr9 108014680 108014795 -9847832 - MIR3 SINE MIR -86 122 6 225 279 0 0 chr9 108015952 108016013 -9846614 + MIR SINE MIR 88 148 -60 443 282 97 73 chr9 108016273 108016695 -9845932 + L2 LINE L2 2841 3272 0 222 224 233 9 chr9 108016706 108016822 -9845805 + L2 LINE L2 2917 3058 -214 305 186 78 59 chr9 108017120 108017222 -9845405 - MIR3 SINE MIR -47 161 58 199 275 308 22 chr9 108017229 108017359 -9845268 + MIR SINE MIR 28 120 -142 2187 94 3 7 chr9 108017359 108017657 -9844970 + AluSx SINE Alu 1 297 -15 199 275 308 22 chr9 108017657 108017708 -9844919 + MIR SINE MIR 120 261 -1 389 276 53 26 chr9 108018146 108018298 -9844329 - MIR SINE MIR 0 262 107 204 259 35 17 chr9 108018583 108018641 -9843986 + MIR SINE MIR 116 174 -88 186 43 0 0 chr9 108019073 108019096 -9843531 + (CCCCG)n Simple_repeat Simple_repeat 2 24 0 264 256 8 72 chr9 108019105 108019230 -9843397 + C-rich Low_complexity Low_complexity 3 119 0 1274 157 75 55 chr9 108019365 108019658 -9842969 - AluJb SINE Alu -13 299 1 1913 75 8 0 chr9 108019798 108020051 -9842576 + AluSp SINE Alu 59 313 0 1889 133 22 35 chr9 108020465 108020782 -9841845 - AluSq SINE Alu 0 313 1 1888 128 20 3 chr9 108020784 108021082 -9841545 - AluSx SINE Alu -8 304 2 477 80 40 0 chr9 108022691 108022766 -9839861 - AluSp SINE Alu -10 303 226 1554 62 5 0 chr9 108022766 108022958 -9839669 - AluSp SINE Alu -120 193 1 579 286 81 32 chr9 108022982 108023230 -9839397 + MIR SINE MIR 2 261 -1 2437 27 40 0 chr9 108023303 108023600 -9839027 + AluY SINE Alu 1 309 -2 2436 71 0 0 chr9 108025389 108025698 -9836929 + AluSc SINE Alu 1 309 0 909 211 30 65 chr9 108026484 108026716 -9835911 + MER58A DNA MER1_type 1 224 0 2413 84 0 0 chr9 108026758 108027068 -9835559 + AluSg SINE Alu 1 310 0 225 326 83 15 chr9 108027070 108027202 -9835425 + MER5A DNA MER1_type 43 183 -6 2171 79 21 3 chr9 108027228 108027518 -9835109 + AluSq SINE Alu 1 295 -18 1885 113 58 4 chr9 108027536 108027810 -9834817 + AluSp SINE Alu 9 297 -16 1752 136 0 31 chr9 108027811 108028098 -9834529 - AluJb SINE Alu -34 278 1 2177 86 0 16 chr9 108028327 108028631 -9833996 + AluY SINE Alu 1 299 -12 879 199 194 0 chr9 108028637 108028853 -9833774 + AluSx SINE Alu 4 261 -51 214 303 0 15 chr9 108029970 108030036 -9832591 + L2 LINE L2 3249 3313 0 386 310 22 30 chr9 108030486 108030718 -9831909 - L1MC/D LINE L1 -2053 5755 5526 2066 126 3 0 chr9 108030737 108031030 -9831597 + AluSq SINE Alu 1 294 -19 28 71 0 0 chr9 108031041 108031097 -9831530 + AT_rich Low_complexity Low_complexity 1 56 0 360 250 100 25 chr9 108031147 108031347 -9831280 - L1MC/D LINE L1 -2329 5479 5265 1567 159 0 0 chr9 108031449 108031700 -9830927 - AluSx SINE Alu -61 251 1 443 322 45 35 chr9 108031717 108031807 -9830820 + MLT1K LTR MaLR 9 97 -491 2546 135 30 103 chr9 108031807 108032165 -9830462 + LTR24 LTR ERV1 1 384 -83 1893 150 6 13 chr9 108032165 108032479 -9830148 - AluSx SINE Alu 0 312 1 2546 135 30 103 chr9 108032479 108032490 -9830137 + LTR24 LTR ERV1 384 394 -73 2214 113 3 0 chr9 108032490 108032800 -9829827 - AluSq SINE Alu -2 311 1 2546 135 30 103 chr9 108032800 108032933 -9829694 + LTR24 LTR ERV1 394 467 0 443 322 45 35 chr9 108032933 108033041 -9829586 + MLT1K LTR MaLR 97 209 -379 445 231 215 0 chr9 108033103 108033233 -9829394 + MLT1K LTR MaLR 188 345 -243 2238 106 3 0 chr9 108033288 108033591 -9829036 - AluSx SINE Alu -8 304 1 216 214 0 0 chr9 108033648 108033690 -9828937 + MIR SINE MIR 111 152 -56 2053 125 0 0 chr9 108033871 108034166 -9828461 - AluSq SINE Alu -18 295 1 1417 122 0 0 chr9 108034299 108034495 -9828132 - AluSq SINE Alu -117 196 1 249 167 0 0 chr9 108034564 108034606 -9828021 + LTR54 LTR ERV1 402 443 -67 21 36 0 0 chr9 108034764 108034792 -9827835 + AT_rich Low_complexity Low_complexity 1 28 0 1253 126 0 0 chr9 108034884 108035066 -9827561 - AluSg/x SINE Alu -2 310 129 310 316 92 7 chr9 108035270 108035422 -9827205 - MIR3 SINE MIR -3 205 41 2260 101 0 0 chr9 108036558 108036854 -9825773 - AluSg SINE Alu -14 296 1 508 271 57 1 chr9 108037855 108038007 -9824620 + MIR SINE MIR 20 184 -62 23 0 0 0 chr9 108039152 108039175 -9823452 + AT_rich Low_complexity Low_complexity 1 23 0 189 0 0 0 chr9 108039891 108039912 -9822715 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 798 176 12 42 chr9 108039912 108040062 -9822565 - AluSg/x SINE Alu -32 278 132 2111 97 3 0 chr9 108040062 108040351 -9822276 - AluSp SINE Alu -23 290 1 798 176 12 42 chr9 108040351 108040365 -9822262 - AluSg/x SINE Alu -178 132 119 2315 99 0 0 chr9 108040586 108040890 -9821737 - AluSg SINE Alu -6 304 1 1032 146 0 0 chr9 108041007 108041165 -9821462 - AluJo/FRAM SINE Alu -18 294 137 2135 105 3 13 chr9 108041168 108041472 -9821155 - AluSp SINE Alu -12 301 1 254 336 81 13 chr9 108041472 108041621 -9821006 - L1MC4a LINE L1 -1845 5963 5805 380 216 52 31 chr9 108041704 108041801 -9820826 + MLT1F LTR MaLR 1 75 -467 1082 221 0 0 chr9 108041841 108042049 -9820578 + L1MD3 LINE L1 6684 6891 -1104 1825 165 0 0 chr9 108042050 108042347 -9820280 + AluJb SINE Alu 1 297 -15 1611 119 11 11 chr9 108042350 108042610 -9820017 + AluSx SINE Alu 1 260 -52 1087 92 0 0 chr9 108042740 108042882 -9819745 + AluSq/x SINE Alu 1 142 -170 2387 51 6 26 chr9 108042883 108043196 -9819431 + AluY SINE Alu 1 307 -4 1376 173 0 92 chr9 108043198 108043534 -9819093 + AluSp SINE Alu 1 305 -8 1542 184 13 13 chr9 108043807 108044112 -9818515 + AluJb SINE Alu 1 305 -7 741 250 82 0 chr9 108044221 108044429 -9818198 + MIR SINE MIR 2 226 -36 1366 158 128 4 chr9 108044550 108044816 -9817811 + AluJb SINE Alu 1 299 -13 3598 246 126 17 chr9 108044991 108046296 -9816331 + L1MEc LINE L1 43 1490 -4906 1007 123 0 32 chr9 108046314 108046493 -9816134 + AluSg/x SINE Alu 135 308 0 444 36 0 0 chr9 108046505 108046561 -9816066 + AluY SINE Alu 2 57 -256 963 299 122 10 chr9 108047082 108047590 -9815037 + L2 LINE L2 2148 2712 -602 1120 131 0 0 chr9 108047593 108047753 -9814874 + AluSg/x SINE Alu 133 292 -18 2315 100 0 0 chr9 108047799 108048110 -9814517 + AluSx SINE Alu 1 311 -1 1878 141 17 0 chr9 108048365 108048664 -9813963 - AluSx SINE Alu -8 304 1 405 327 64 9 chr9 108049236 108049456 -9813171 + L1ME4a LINE L1 5595 5826 -295 412 208 0 0 chr9 108049533 108049642 -9812985 + L1M4 LINE L1 4303 4411 -1735 2154 90 0 3 chr9 108052316 108052604 -9810023 + AluSx SINE Alu 26 312 0 1904 108 14 14 chr9 108052604 108052931 -9809696 + AluSx SINE Alu 1 327 0 23 0 0 0 chr9 108056043 108056066 -9806561 + GC_rich Low_complexity Low_complexity 1 23 0 538 275 29 25 chr9 108057527 108057732 -9804895 - MIR SINE MIR -45 217 11 1017 159 0 0 chr9 108060168 108060331 -9802296 + AluSg/x SINE Alu 133 295 -15 1224 72 0 0 chr9 108061238 108061391 -9801236 - AluSg SINE Alu -157 153 1 1592 133 13 0 chr9 108061442 108061675 -9800952 - AluSx SINE Alu -76 236 1 240 122 0 24 chr9 108061724 108061765 -9800862 - Alu SINE Alu -18 115 76 2133 98 3 3 chr9 108061765 108062061 -9800566 - AluSc SINE Alu -13 296 1 306 341 98 20 chr9 108062068 108062314 -9800313 - L1ME LINE L1 -346 5775 5511 1891 182 44 85 chr9 108062811 108063267 -9799360 + MLT1D LTR MaLR 1 434 -71 2080 129 10 0 chr9 108063267 108063576 -9799051 - AluSx SINE Alu 0 312 1 1891 182 44 85 chr9 108063576 108063646 -9798981 + MLT1D LTR MaLR 434 505 0 259 299 116 18 chr9 108063915 108064079 -9798548 + MIR3 SINE MIR 2 181 -27 203 181 194 0 chr9 108064186 108064258 -9798369 - MIR SINE MIR 0 262 177 330 271 30 38 chr9 108064266 108064399 -9798228 + L2 LINE L2 2745 2876 -438 2144 117 0 3 chr9 108064622 108064929 -9797698 + AluSg SINE Alu 1 306 -4 1627 171 4 7 chr9 108065038 108065312 -9797315 + AluJb SINE Alu 1 273 -39 23 54 0 0 chr9 108065312 108065349 -9797278 + AT_rich Low_complexity Low_complexity 1 37 0 2116 123 0 0 chr9 108065365 108065666 -9796961 + AluSx SINE Alu 12 312 0 538 317 63 44 chr9 108066094 108066460 -9796167 + L1MA3 LINE L1 5462 5834 -471 * 936 282 34 34 chr9 108066145 108066496 -9796131 + L1MC4a LINE L1 5517 5867 -1941 2147 114 7 0 chr9 108067002 108067309 -9795318 + AluSx SINE Alu 4 312 0 467 53 0 0 chr9 108067317 108067374 -9795253 + Alu SINE Alu 5 61 -248 2160 110 7 3 chr9 108067499 108067800 -9794827 - AluSq SINE Alu -11 302 1 25 40 0 20 chr9 108067843 108067868 -9794759 + AT_rich Low_complexity Low_complexity 1 25 -24 2094 98 39 0 chr9 108067868 108068154 -9794473 - AluSx SINE Alu -15 297 1 25 40 0 20 chr9 108068154 108068178 -9794449 + AT_rich Low_complexity Low_complexity 25 49 0 198 0 0 0 chr9 108068949 108068971 -9793656 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 1433 147 73 11 chr9 108068971 108069244 -9793383 - AluJb SINE Alu -22 290 1 816 146 0 0 chr9 108069255 108069378 -9793249 - AluJb SINE Alu -189 123 1 743 236 100 27 chr9 108069441 108069661 -9792966 + MLT1D LTR MaLR 254 489 -16 230 267 17 17 chr9 108069727 108069787 -9792840 - LTR27 LTR ERV1 -318 702 643 * 2410 179 12 32 chr9 108069780 108070108 -9792519 - LTR27 LTR ERV1 -141 495 222 1792 121 0 25 chr9 108070108 108070389 -9792238 + AluSg SINE Alu 34 307 -3 2410 179 12 32 chr9 108070389 108070600 -9792027 - LTR27 LTR ERV1 -414 222 8 2188 86 3 22 chr9 108070603 108070916 -9791711 - AluSg SINE Alu -3 307 1 213 39 0 0 chr9 108071337 108071363 -9791264 + (CCCTAA)n Simple_repeat Simple_repeat 1 26 0 249 83 0 0 chr9 108072564 108072600 -9790027 + (TG)n Simple_repeat Simple_repeat 1 36 0 227 250 18 0 chr9 108075658 108075714 -9786913 + MIR SINE MIR 108 164 -98 2220 88 10 0 chr9 108077790 108078084 -9784543 + AluSg SINE Alu 1 297 -13 2173 118 0 0 chr9 108078093 108078389 -9784238 + AluSx SINE Alu 1 296 -16 1574 119 0 0 chr9 108078399 108078618 -9784009 + AluSg/x SINE Alu 81 299 -13 701 154 27 0 chr9 108078631 108078741 -9783886 + FRAM SINE Alu 40 152 -24 303 138 0 220 chr9 108082025 108082134 -9780493 - MLT1-int LTR MaLR -728 643 559 464 180 0 56 chr9 108082151 108082262 -9780365 + AluJ/FRAM SINE Alu 215 312 0 2004 114 27 13 chr9 108082499 108082798 -9779829 - AluSx SINE Alu -9 303 1 1955 135 10 6 chr9 108083152 108083463 -9779164 - AluSx SINE Alu 0 312 1 258 250 250 0 chr9 108084521 108084613 -9778014 + MER5A DNA MER1_type 74 188 -1 279 269 106 0 chr9 108084670 108084774 -9777853 - L2 LINE L2 -17 3255 3141 758 298 36 0 chr9 108085930 108086178 -9776449 + MIR SINE MIR 4 260 -2 297 347 42 7 chr9 108086260 108086404 -9776223 + MER5A DNA MER1_type 40 188 -1 228 103 0 0 chr9 108087048 108087087 -9775540 + L1MB3 LINE L1 1642 1680 -4704 1482 247 13 5 chr9 108087092 108087469 -9775158 + L1MB3 LINE L1 2680 3059 -3323 2763 171 23 27 chr9 108087575 108088236 -9774391 + L1MB3 LINE L1 3409 4066 -2316 670 152 6 84 chr9 108088250 108088428 -9774199 + L1MB3 LINE L1 5803 5966 -441 978 157 11 5 chr9 108088444 108088635 -9773992 + L1MB3 LINE L1 5992 6183 0 2315 177 20 16 chr9 108088635 108089079 -9773548 + L1MB3 LINE L1 5970 6417 -2 681 233 67 17 chr9 108089261 108089441 -9773186 - MER5A DNA MER1_type 0 189 1 765 147 22 0 chr9 108091605 108091764 -9770863 - L1MA4 LINE L1 0 6300 6162 8058 62 10 12 chr9 108091764 108092773 -9769854 + LTR13 LTR ERVK 1 1007 0 217 100 0 0 chr9 108093310 108093340 -9769287 + MIR SINE MIR 116 145 -117 26 0 0 0 chr9 108094488 108094514 -9768113 + GC_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr9 108094634 108094656 -9767971 + GC_rich Low_complexity Low_complexity 1 22 0 272 283 18 53 chr9 108094880 108094993 -9767634 + MIR SINE MIR 68 176 -86 2029 95 25 41 chr9 108095025 108095342 -9767285 - AluJb SINE Alu 0 312 1 2241 63 3 20 chr9 108095363 108095662 -9766965 - AluSq SINE Alu -19 294 1 753 217 0 14 chr9 108096194 108096337 -9766290 + FRAM SINE Alu 29 169 -7 212 289 134 69 chr9 108096925 108097157 -9765470 + L2 LINE L2 3009 3255 -17 507 308 27 0 chr9 108097208 108097354 -9765273 + MIR SINE MIR 2 151 -111 2279 73 0 3 chr9 108097866 108098153 -9764474 + AluSx SINE Alu 12 297 -15 2146 111 3 0 chr9 108098693 108098990 -9763637 + AluSx SINE Alu 1 298 -14 447 260 20 93 chr9 108100005 108100209 -9762418 - MLT1K LTR MaLR -31 557 369 2159 131 0 0 chr9 108100489 108100801 -9761826 - AluSx SINE Alu 0 312 1 1799 152 13 19 chr9 108102391 108102701 -9759926 - AluJo SINE Alu -4 308 1 397 272 7 7 chr9 108103288 108103435 -9759192 + CT-rich Low_complexity Low_complexity 4 150 0 313 231 12 0 chr9 108103442 108103615 -9759012 + (TCCA)n Simple_repeat Simple_repeat 2 176 0 389 237 16 48 chr9 108103640 108103901 -9758726 + (TCCA)n Simple_repeat Simple_repeat 1 252 0 297 301 249 29 chr9 108104182 108104528 -9758099 + L3 LINE CR1 1153 1574 -3 2329 76 0 19 chr9 108104574 108104891 -9757736 + AluY SINE Alu 1 311 0 301 242 15 0 chr9 108104893 108104959 -9757668 + L1ME2 LINE L1 5175 5241 -905 280 209 35 12 chr9 108105014 108105100 -9757527 + L1ME2 LINE L1 5338 5425 -737 707 179 8 0 chr9 108105111 108105234 -9757393 + FLAM_C SINE Alu 1 124 -19 1050 260 54 76 chr9 108105235 108105670 -9756957 + L1ME2 LINE L1 5424 5844 -320 2156 91 0 7 chr9 108105670 108105957 -9756670 + AluSx SINE Alu 21 305 -7 1050 260 54 76 chr9 108105957 108106129 -9756498 + L1ME2 LINE L1 5844 6018 -146 2271 76 9 38 chr9 108106154 108106270 -9756357 + AluSx SINE Alu 1 119 -193 2137 114 0 22 chr9 108106270 108106585 -9756042 + AluY SINE Alu 1 308 -3 2271 76 9 38 chr9 108106585 108106783 -9755844 + AluSx SINE Alu 119 306 -6 2092 132 0 0 chr9 108106838 108107142 -9755485 - AluSq SINE Alu -8 305 2 192 152 0 0 chr9 108107413 108107446 -9755181 + C-rich Low_complexity Low_complexity 2 34 0 2089 106 13 23 chr9 108107446 108107749 -9754878 - AluSx SINE Alu -12 300 1 2222 92 0 3 chr9 108107751 108108044 -9754583 - AluSx SINE Alu -20 292 1 493 101 0 0 chr9 108108488 108108557 -9754070 + Alu SINE Alu 228 296 -13 1756 162 3 3 chr9 108108569 108108876 -9753751 - AluSx SINE Alu 0 307 1 251 336 29 36 chr9 108108876 108109013 -9753614 + L2 LINE L2 2911 3046 -226 867 136 13 128 chr9 108109103 108109149 -9753478 - MER20 DNA MER1_type -1 218 168 2239 89 0 13 chr9 108109149 108109452 -9753175 - AluY SINE Alu -12 299 1 2301 76 3 7 chr9 108109454 108109756 -9752871 - AluSp SINE Alu -12 301 1 867 136 13 128 chr9 108109756 108109862 -9752765 - MER20 DNA MER1_type -52 167 96 2186 113 10 0 chr9 108109862 108110162 -9752465 - AluSx SINE Alu -9 303 1 867 136 13 128 chr9 108110162 108110240 -9752387 - MER20 DNA MER1_type -123 96 11 223 373 90 8 chr9 108110358 108110492 -9752135 - MIR3 SINE MIR -26 182 38 2363 49 3 0 chr9 108111032 108111339 -9751288 - AluY SINE Alu 0 308 1 302 336 62 0 chr9 108111351 108111479 -9751148 - Charlie8 DNA MER1_type -2259 158 23 185 309 31 21 chr9 108111573 108111670 -9750957 + MIR3 SINE MIR 79 176 -32 1418 123 0 0 chr9 108111897 108112092 -9750535 - AluSg/x SINE Alu -18 294 100 194 241 37 0 chr9 108112319 108112373 -9750254 + MIR SINE MIR 76 131 -77 182 373 32 40 chr9 108112814 108112940 -9749687 - MIR SINE MIR -61 147 23 461 389 34 11 chr9 108113158 108113420 -9749207 + L1M4 LINE L1 4574 4841 -1305 1248 150 0 19 chr9 108113439 108113652 -9748975 + AluSg/x SINE Alu 85 293 -19 281 314 21 89 chr9 108113676 108113838 -9748789 + L1M4 LINE L1 4888 5059 -1087 1664 160 51 3 chr9 108113838 108114132 -9748495 + AluJo SINE Alu 1 308 -4 1800 174 17 0 chr9 108114135 108114428 -9748199 + AluJb SINE Alu 1 298 -14 2186 75 0 37 chr9 108114431 108114748 -9747879 + AluSg SINE Alu 1 306 0 281 314 21 89 chr9 108114748 108114913 -9747714 + L1M4 LINE L1 5063 5201 -945 2168 92 13 10 chr9 108115376 108115679 -9746948 - AluSx SINE Alu -8 304 1 636 300 122 38 chr9 108115781 108116101 -9746526 - L1ME4a LINE L1 -119 6002 5656 417 271 21 28 chr9 108116314 108116458 -9746169 + Charlie8 DNA MER1_type 26 168 -2249 218 315 43 11 chr9 108117530 108117622 -9745005 - MIR SINE MIR -15 247 153 1988 121 24 3 chr9 108117626 108117924 -9744703 - AluSx SINE Alu -8 304 1 1185 121 0 0 chr9 108117979 108118144 -9744483 - AluSg/x SINE Alu -14 298 134 2119 104 14 0 chr9 108118144 108118467 -9744160 - AluSx SINE Alu 0 312 1 2230 108 3 7 chr9 108118469 108118774 -9743853 - AluSx SINE Alu -8 304 1 1143 257 61 26 chr9 108118774 108119152 -9743475 + MLT1E LTR MaLR 135 525 -68 1469 102 0 0 chr9 108119156 108119376 -9743251 - AluSq SINE Alu 0 315 96 1164 105 0 0 chr9 108119397 108119550 -9743077 - AluSq SINE Alu -160 153 1 1121 139 0 0 chr9 108219866 108220031 -9642596 + AluSg/x SINE Alu 140 304 -5 22 0 0 0 chr9 108220047 108220069 -9642558 + AT_rich Low_complexity Low_complexity 1 22 0 662 263 83 15 chr9 108221221 108221426 -9641201 - MIR SINE MIR -31 231 13 186 103 0 0 chr9 108221428 108221457 -9641170 + (TCCC)n Simple_repeat Simple_repeat 1 29 0 314 250 116 27 chr9 108221873 108221985 -9640642 + L2 LINE L2 3136 3257 -15 323 255 88 99 chr9 108222525 108222717 -9639910 + L1 LINE L1 3117 3306 -2840 221 131 28 84 chr9 108222975 108223082 -9639545 + (CACAC)n Simple_repeat Simple_repeat 1 101 0 2338 88 3 7 chr9 108223456 108223753 -9638874 - AluSq SINE Alu -17 296 1 1116 145 0 0 chr9 108223761 108223920 -9638707 - AluSg/x SINE Alu -18 292 134 2614 51 0 0 chr9 108223926 108224222 -9638405 - AluY SINE Alu -15 296 1 452 310 6 25 chr9 108224239 108224397 -9638230 - L2 LINE L2 -1 3312 3158 384 257 42 47 chr9 108224597 108224780 -9637847 - MIR3 SINE MIR -49 159 6 715 181 0 42 chr9 108224921 108225065 -9637562 + MIR SINE MIR 12 149 -113 1066 184 121 53 chr9 108225066 108225348 -9637279 + AluJo SINE Alu 1 301 -1 432 206 6 74 chr9 108225348 108225484 -9637143 - AluS SINE Alu -206 97 1 636 208 0 0 chr9 108225722 108225828 -9636799 - FLAM_C SINE Alu -33 110 5 410 175 62 0 chr9 108225955 108226035 -9636592 - AluS SINE Alu -4 307 223 213 39 0 0 chr9 108227172 108227198 -9635429 + (C)n Simple_repeat Simple_repeat 1 26 0 34 24 0 0 chr9 108227303 108227344 -9635283 + GC_rich Low_complexity Low_complexity 1 41 0 206 224 35 52 chr9 108227443 108227617 -9635010 + (CCCG)n Simple_repeat Simple_repeat 3 173 0 * 224 250 8 39 chr9 108227491 108227619 -9635008 + (CCCCG)n Simple_repeat Simple_repeat 1 124 0 224 300 6 22 chr9 108227575 108227755 -9634872 + C-rich Low_complexity Low_complexity 2 178 0 * 298 214 11 62 chr9 108227648 108227826 -9634801 + (CCCG)n Simple_repeat Simple_repeat 4 172 0 22 56 0 0 chr9 108227847 108227883 -9634744 + GC_rich Low_complexity Low_complexity 1 36 0 55 16 0 0 chr9 108227911 108227973 -9634654 + GC_rich Low_complexity Low_complexity 1 62 0 2346 95 0 10 chr9 108328085 108328390 -9534237 - AluSx SINE Alu -10 302 1 2106 125 3 3 chr9 108328440 108328736 -9533891 - AluSx SINE Alu -13 299 4 2131 129 3 0 chr9 108328738 108329032 -9533595 - AluSx SINE Alu -14 298 4 2245 106 13 0 chr9 108329093 108329394 -9533233 + AluSx SINE Alu 1 305 -7 2143 85 17 31 chr9 108329443 108329737 -9532890 + AluSc SINE Alu 1 290 -19 2292 95 0 3 chr9 108329737 108330033 -9532594 + AluSg SINE Alu 1 295 -15 686 165 17 0 chr9 108330037 108330152 -9532475 - AluJb SINE Alu -194 118 2 319 251 85 132 chr9 108330361 108330442 -9532185 + MIR SINE MIR 35 118 -144 194 0 39 0 chr9 108330442 108330468 -9532159 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1989 120 3 14 chr9 108330470 108330754 -9531873 - AluSx SINE Alu -30 282 2 319 251 85 132 chr9 108330754 108330904 -9531723 + MIR SINE MIR 119 258 -4 1625 165 4 15 chr9 108331202 108331474 -9531153 + AluJo SINE Alu 42 310 -2 2132 132 7 0 chr9 108331484 108331787 -9530840 + AluSx SINE Alu 1 305 -7 636 92 0 0 chr9 108331808 108331895 -9530732 - AluSg/x SINE Alu -13 296 210 1322 160 5 5 chr9 108331999 108332205 -9530422 - AluSq SINE Alu -107 206 1 2291 85 0 0 chr9 108332214 108332520 -9530107 - AluY SINE Alu 0 306 1 192 77 0 0 chr9 108332589 108332615 -9530012 + (A)n Simple_repeat Simple_repeat 1 26 0 1539 159 0 4 chr9 108332648 108332881 -9529746 + AluSg/x SINE Alu 73 304 -6 1813 114 0 41 chr9 108332887 108333158 -9529469 + AluSq SINE Alu 1 260 -53 2366 100 7 0 chr9 108333430 108333740 -9528887 - AluSp SINE Alu -1 312 1 1863 107 0 0 chr9 108333821 108334063 -9528564 - AluSq SINE Alu 0 313 72 2318 84 0 17 chr9 108334170 108334468 -9528159 - AluY SINE Alu -18 293 1 2499 71 0 0 chr9 108334471 108334767 -9527860 - AluY SINE Alu -15 296 1 242 334 139 13 chr9 108335419 108335721 -9526906 + L2 LINE L2 1393 1732 -1582 288 327 87 4 chr9 108335822 108335951 -9526676 + L2 LINE L2 2006 2123 -1191 2262 58 13 65 chr9 108335951 108336260 -9526367 - AluY SINE Alu -18 293 1 288 327 87 4 chr9 108336260 108336384 -9526243 + L2 LINE L2 2123 2280 -1034 1744 168 7 33 chr9 108336769 108337073 -9525554 - AluJb SINE Alu -16 296 1 1754 200 0 3 chr9 108337262 108337572 -9525055 + AluJo SINE Alu 1 309 -3 722 280 73 9 chr9 108337606 108337890 -9524737 - L1MC4a LINE L1 -297 5824 5569 2154 78 63 0 chr9 108338386 108338670 -9523957 + AluSc SINE Alu 1 302 -7 816 170 85 0 chr9 108339046 108339187 -9523440 + FRAM SINE Alu 3 155 -21 243 245 19 0 chr9 108339187 108339240 -9523387 + GA-rich Low_complexity Low_complexity 2 55 0 312 285 104 28 chr9 108339931 108340075 -9522552 - HAL1 LINE L1 -34 2473 2319 2050 142 3 3 chr9 108340084 108340386 -9522241 - AluJb SINE Alu -5 307 6 634 209 0 37 chr9 108340403 108340537 -9522090 - FLAM_C SINE Alu -4 129 1 756 133 0 0 chr9 108340553 108340673 -9521954 - AluSg/x SINE Alu -1 309 190 1527 140 21 21 chr9 108340673 108340908 -9521719 + AluSx SINE Alu 57 291 -21 1671 105 9 4 chr9 108341723 108341952 -9520675 + AluSg/x SINE Alu 67 296 -14 251 167 0 0 chr9 108341953 108341995 -9520632 + MIR SINE MIR 2 43 -219 204 67 0 0 chr9 108342009 108342039 -9520588 + (TTG)n Simple_repeat Simple_repeat 2 31 0 2237 93 7 0 chr9 108342053 108342332 -9520295 - AluSq SINE Alu -32 281 1 2473 91 0 7 chr9 108342361 108342670 -9519957 - AluSp SINE Alu -5 308 2 1752 168 44 17 chr9 108342671 108342969 -9519658 - AluJb SINE Alu -6 306 1 832 235 25 10 chr9 108342972 108343168 -9519459 + MIR SINE MIR 64 262 0 1723 104 0 0 chr9 108343709 108343930 -9518697 + AluSg SINE Alu 14 234 -76 451 336 46 42 chr9 108344038 108344279 -9518348 + L2 LINE L2 2258 2499 -815 2438 71 0 0 chr9 108344469 108344764 -9517863 + AluY SINE Alu 1 295 -16 2303 91 10 26 chr9 108344768 108345077 -9517550 + AluSp SINE Alu 1 304 -9 2148 128 7 0 chr9 108345087 108345383 -9517244 + AluSx SINE Alu 1 298 -14 2295 119 0 0 chr9 108345392 108345694 -9516933 + AluSx SINE Alu 2 303 -9 2192 84 0 25 chr9 108346051 108346337 -9516290 - AluSx SINE Alu -3 309 31 2228 101 13 22 chr9 108346983 108347299 -9515328 + AluSq SINE Alu 1 313 0 2077 143 0 3 chr9 108347927 108348227 -9514400 + AluSx SINE Alu 1 299 -13 243 336 107 7 chr9 108348294 108348443 -9514184 + MIR SINE MIR 2 165 -97 2509 75 0 3 chr9 108348554 108348859 -9513768 - AluSc SINE Alu -5 304 1 858 145 72 22 chr9 108348933 108349071 -9513556 + AluJo SINE Alu 1 145 -167 2327 87 0 32 chr9 108349072 108349381 -9513246 + AluSq SINE Alu 1 299 -14 2111 111 24 3 chr9 108349381 108349669 -9512958 + AluSq SINE Alu 1 294 -19 2157 139 7 3 chr9 108349853 108350156 -9512471 - AluSx SINE Alu -8 304 1 258 314 23 12 chr9 108350604 108350690 -9511937 - MIR3 SINE MIR -18 190 104 213 275 0 58 chr9 108350798 108350867 -9511760 - L2 LINE L2 -5 3267 3203 2383 94 0 3 chr9 108350997 108351304 -9511323 + AluSq SINE Alu 6 311 -2 1849 170 0 22 chr9 108351343 108351655 -9510972 + AluJb SINE Alu 1 305 -7 910 123 8 0 chr9 108352203 108352333 -9510294 + AluSq/x SINE Alu 1 131 -181 1577 98 5 0 chr9 108352337 108352541 -9510086 + AluSx SINE Alu 1 205 -107 774 229 0 0 chr9 108352542 108352682 -9509945 - FRAM SINE Alu -36 140 1 1660 141 83 11 chr9 108352794 108353071 -9509556 + AluJb SINE Alu 1 297 -15 1744 147 13 57 chr9 108353748 108354048 -9508579 + AluJo SINE Alu 1 287 -25 1694 148 0 112 chr9 108356357 108356515 -9506112 + AluJo SINE Alu 1 102 -200 1460 107 48 15 chr9 108356515 108356721 -9505906 + AluSg/x SINE Alu 82 294 -16 1694 148 0 112 chr9 108356721 108356901 -9505726 + AluJo SINE Alu 102 301 -1 394 238 111 32 chr9 108356917 108357043 -9505584 + MIR3 SINE MIR 20 155 -53 2284 95 0 13 chr9 108357228 108357533 -9505094 + AluSg SINE Alu 3 303 -7 403 241 16 147 chr9 108357626 108357739 -9504888 - MER91B DNA MER1_type -10 180 100 390 123 18 0 chr9 108357739 108357796 -9504831 + U7 snRNA snRNA 2 59 -4 403 241 16 147 chr9 108357796 108357873 -9504754 - MER91B DNA MER1_type -90 100 15 904 151 0 0 chr9 108358074 108358200 -9504427 + FLAM_C SINE Alu 1 126 -17 33 25 0 0 chr9 108358200 108358240 -9504387 + AT_rich Low_complexity Low_complexity 1 40 0 1564 176 23 56 chr9 108358907 108359061 -9503566 + AluJb SINE Alu 1 142 -170 2478 77 0 3 chr9 108359061 108359372 -9503255 + AluY SINE Alu 1 310 -1 1564 176 23 56 chr9 108359372 108359523 -9503104 + AluJb SINE Alu 142 296 -16 1244 155 26 202 chr9 108359695 108359940 -9502687 + L1MC4 LINE L1 7637 7755 -287 2264 99 14 0 chr9 108359940 108360232 -9502395 - AluSx SINE Alu -16 296 1 1244 155 26 202 chr9 108360232 108360476 -9502151 + L1MC4 LINE L1 7755 8040 -2 278 185 19 0 chr9 108360757 108360811 -9501816 - MLT2B1 LTR ERVL -162 358 304 809 465 84 0 chr9 108360870 108361143 -9501484 - AluSg SINE Alu -4 296 1 978 204 11 0 chr9 108361143 108361319 -9501308 + AluSg/x SINE Alu 118 295 -15 2082 113 7 3 chr9 108361333 108361616 -9501011 + AluSq SINE Alu 11 294 -19 2235 115 0 29 chr9 108361620 108361933 -9500694 + AluSc SINE Alu 1 304 -5 2357 79 7 13 chr9 108361952 108362255 -9500372 + AluSq SINE Alu 5 305 -8 823 186 21 14 chr9 108362321 108362466 -9500161 + FRAM SINE Alu 1 146 -30 1990 131 0 39 chr9 108362468 108362633 -9499994 - AluSx SINE Alu -13 299 129 1874 82 4 27 chr9 108362633 108362805 -9499822 - AluSc SINE Alu -5 304 129 2619 51 0 6 chr9 108362805 108363118 -9499509 - AluY SINE Alu 0 311 1 2307 69 10 0 chr9 108363121 108363435 -9499192 - AluY SINE Alu 0 311 1 1874 82 4 27 chr9 108363435 108363514 -9499113 - AluSc SINE Alu -182 127 55 1990 131 0 39 chr9 108363514 108363653 -9498974 - AluSx SINE Alu -183 129 7 294 100 0 0 chr9 108363733 108363773 -9498854 + LTR56 LTR ERV1 349 388 -57 2333 70 11 0 chr9 108363911 108364198 -9498429 + AluY SINE Alu 1 290 -21 351 346 40 0 chr9 108364212 108364414 -9498213 + L1ME LINE L1 5610 5819 -302 813 206 24 0 chr9 108364507 108364672 -9497955 - AluSg/x SINE Alu -9 303 135 2458 70 0 3 chr9 108364672 108364971 -9497656 - AluY SINE Alu -13 298 1 2347 97 3 0 chr9 108364972 108365270 -9497357 - AluSp SINE Alu -11 302 4 2280 108 3 16 chr9 108365285 108365599 -9497028 - AluY SINE Alu -1 310 1 777 151 0 0 chr9 108365736 108365855 -9496772 + AluJb SINE Alu 24 142 -170 2246 113 7 0 chr9 108365857 108366166 -9496461 + AluSp SINE Alu 1 311 -2 2261 97 10 3 chr9 108366466 108366764 -9495863 + AluSg SINE Alu 1 300 -10 2051 140 7 0 chr9 108367139 108367425 -9495202 + AluSx SINE Alu 1 288 -24 192 97 0 0 chr9 108367479 108367510 -9495117 + (CAAGC)n Simple_repeat Simple_repeat 5 35 0 1975 140 0 44 chr9 108367516 108367837 -9494790 + AluSx SINE Alu 1 307 -5 354 191 79 22 chr9 108368087 108368176 -9494451 + L1MB4 LINE L1 6048 6141 -39 1332 207 14 21 chr9 108368176 108368449 -9494178 + AluJo SINE Alu 1 274 -38 1944 132 0 0 chr9 108368449 108368722 -9493905 + AluSx SINE Alu 31 303 -9 2298 107 17 0 chr9 108368725 108369025 -9493602 + AluSg SINE Alu 1 305 -5 1332 207 14 21 chr9 108369025 108369037 -9493590 + AluJo SINE Alu 276 288 -24 569 318 6 0 chr9 108369072 108369242 -9493385 + MER5B DNA MER1_type 2 172 -6 198 0 0 0 chr9 108369539 108369561 -9493066 + (TA)n Simple_repeat Simple_repeat 2 23 0 700 61 10 40 chr9 108369561 108369660 -9492967 - AluSp SINE Alu -162 151 56 1302 109 22 6 chr9 108369664 108369847 -9492780 - AluSx SINE Alu -126 186 1 2109 119 7 0 chr9 108370262 108370548 -9492079 + AluSx SINE Alu 1 288 -24 2303 115 0 6 chr9 108370643 108370955 -9491672 + AluSx SINE Alu 1 310 -2 2500 99 0 0 chr9 108371162 108371475 -9491152 + AluSq SINE Alu 1 313 0 1098 173 0 0 chr9 108371480 108371648 -9490979 + AluSp SINE Alu 128 295 -18 2302 92 7 0 chr9 108371650 108371943 -9490684 + AluSp SINE Alu 1 295 -18 2202 117 0 7 chr9 108371958 108372257 -9490370 + AluSx SINE Alu 2 298 -14 682 162 0 0 chr9 108372271 108372376 -9490251 + AluSq/x SINE Alu 3 107 -205 443 121 0 0 chr9 108372375 108372441 -9490186 + AluSq/x SINE Alu 68 133 -179 * 2117 109 0 7 chr9 108372445 108372738 -9489889 + AluY SINE Alu 1 291 -20 2428 88 0 0 chr9 108372742 108373050 -9489577 + AluY SINE Alu 1 308 -3 487 251 99 28 chr9 108373382 108373593 -9489034 + L2 LINE L2 2744 2969 -345 854 161 0 0 chr9 108373593 108373717 -9488910 - FRAM SINE Alu -35 141 18 696 268 79 44 chr9 108373734 108374077 -9488550 + L2 LINE L2 2935 3289 -24 2449 50 3 38 chr9 108374231 108374548 -9488079 + AluY SINE Alu 1 306 -5 469 108 0 0 chr9 108374575 108374640 -9487987 + Alu SINE Alu 236 300 -10 2408 50 7 7 chr9 108374640 108374938 -9487689 + AluY SINE Alu 1 298 -13 1714 141 10 19 chr9 108374940 108375253 -9487374 + AluJb SINE Alu 3 312 0 23 33 0 0 chr9 108375627 108375657 -9486970 + GC_rich Low_complexity Low_complexity 1 30 0 1944 143 7 20 chr9 108376533 108376833 -9485794 + AluJo SINE Alu 1 296 -16 1422 174 11 44 chr9 108376850 108377109 -9485518 + AluJb SINE Alu 31 282 -30 198 65 32 0 chr9 108377109 108377140 -9485487 + (TAA)n Simple_repeat Simple_repeat 2 180 0 1422 174 11 44 chr9 108377140 108377155 -9485472 + AluJb SINE Alu 282 296 -16 2238 117 3 0 chr9 108377179 108377477 -9485150 - AluSx SINE Alu -13 299 1 1739 120 0 4 chr9 108377479 108377721 -9484906 - AluSx SINE Alu -17 295 55 1694 135 17 27 chr9 108377734 108378031 -9484596 - AluJb SINE Alu -7 305 12 2120 50 60 3 chr9 108378242 108378524 -9484103 + AluY SINE Alu 1 298 -13 1101 165 21 51 chr9 108378564 108378639 -9483988 + AluJb SINE Alu 69 145 -167 2136 106 3 0 chr9 108378639 108378932 -9483695 + AluSq SINE Alu 1 294 -19 1101 165 21 51 chr9 108378932 108379093 -9483534 + AluJb SINE Alu 145 298 -14 2334 80 0 6 chr9 108379109 108379422 -9483205 - AluY SINE Alu 0 311 1 1715 145 53 3 chr9 108379424 108379707 -9482920 - AluSg SINE Alu -13 297 1 2081 142 0 0 chr9 108379730 108380040 -9482587 - AluSx SINE Alu 0 312 3 801 149 0 22 chr9 108380045 108380179 -9482448 - FLAM_C SINE Alu -12 131 1 228 287 125 49 chr9 108380244 108380378 -9482249 - MER5A DNA MER1_type -31 147 4 780 236 55 6 chr9 108380426 108380591 -9482036 - FAM SINE Alu -2 173 1 911 136 13 13 chr9 108380789 108380944 -9481683 - FRAM SINE Alu -12 164 10 1789 136 56 3 chr9 108380956 108381242 -9481385 - AluSx SINE Alu -11 301 1 1449 106 43 0 chr9 108381266 108381474 -9481153 - AluSx SINE Alu -95 217 1 1751 165 7 7 chr9 108382020 108382329 -9480298 - AluJb SINE Alu -1 311 3 2050 107 33 13 chr9 108382331 108382630 -9479997 - AluSq SINE Alu -8 305 1 199 362 32 0 chr9 108382630 108382724 -9479903 + L2 LINE L2 2956 3052 -261 194 278 67 11 chr9 108382725 108382815 -9479812 + L2 LINE L2 3219 3313 0 2014 123 0 3 chr9 108382859 108383160 -9479467 - AluSx SINE Alu -8 304 5 802 134 0 63 chr9 108383220 108383362 -9479265 + FLAM_C SINE Alu 1 133 0 2226 107 0 0 chr9 108383420 108383730 -9478897 - AluSg SINE Alu 0 310 1 2056 141 0 0 chr9 108383867 108384170 -9478457 + AluSx SINE Alu 1 303 -9 2115 103 0 13 chr9 108384170 108384481 -9478146 + AluSg SINE Alu 1 307 -3 951 115 7 0 chr9 108384481 108384620 -9478007 + AluSc SINE Alu 132 271 -38 699 187 7 71 chr9 108384621 108384776 -9477851 - AluJo SINE Alu -98 214 70 293 252 70 35 chr9 108384976 108385091 -9477536 - Charlie8 DNA MER1_type -2248 169 51 181 308 22 44 chr9 108385133 108385224 -9477403 - MIR SINE MIR -20 242 154 1434 170 82 28 chr9 108385302 108385584 -9477043 - AluJb SINE Alu -15 297 1 2146 118 0 3 chr9 108385619 108385932 -9476695 + AluSx SINE Alu 1 312 0 2364 73 0 10 chr9 108385939 108386239 -9476388 + AluY SINE Alu 1 297 -14 368 263 26 0 chr9 108387034 108387148 -9475479 - MIR3 SINE MIR -10 198 82 851 188 38 0 chr9 108387446 108387606 -9475021 + AluJb SINE Alu 147 312 0 1839 158 7 0 chr9 108387613 108387910 -9474717 + AluJo SINE Alu 1 299 -13 319 261 43 9 chr9 108387964 108388079 -9474548 + L1MC5 LINE L1 7324 7442 -519 550 253 101 0 chr9 108388091 108388249 -9474378 + L1ME3 LINE L1 5944 6117 -45 2221 98 0 7 chr9 108388290 108388585 -9474042 + AluSp SINE Alu 1 293 -20 2385 79 0 0 chr9 108388587 108388890 -9473737 + AluY SINE Alu 1 303 -8 238 121 0 0 chr9 108388991 108389024 -9473603 - Alu SINE Alu -264 38 6 6429 141 34 30 chr9 108389028 108389223 -9473404 - Tigger1 DNA MER2_type -1239 1179 986 1917 139 23 0 chr9 108389223 108389526 -9473101 + AluSx SINE Alu 3 312 0 6429 141 34 30 chr9 108389526 108390086 -9472541 - Tigger1 DNA MER2_type -1432 986 430 1548 159 58 7 chr9 108390086 108390381 -9472246 - AluSq SINE Alu -3 310 1 1285 152 115 37 chr9 108390391 108390661 -9471966 - AluSx SINE Alu -21 291 1 6429 141 34 30 chr9 108390661 108391060 -9471567 - Tigger1 DNA MER2_type -1996 422 8 1752 142 7 33 chr9 108391151 108391454 -9471173 + AluJo SINE Alu 1 295 -17 573 249 130 0 chr9 108391454 108391639 -9470988 + MIR SINE MIR 42 250 -12 1452 161 7 43 chr9 108392047 108392186 -9470441 - AluJb SINE Alu -40 272 146 2227 94 0 7 chr9 108392186 108392485 -9470142 - AluSg SINE Alu -13 297 1 1452 161 7 43 chr9 108392485 108392625 -9470002 - AluJb SINE Alu -166 146 3 595 311 103 3 chr9 108392661 108392963 -9469664 + L2 LINE L2 2964 3295 -18 2113 65 58 4 chr9 108392964 108393241 -9469386 - AluY SINE Alu -19 292 1 1210 105 12 0 chr9 108393252 108393423 -9469204 - AluSg/x SINE Alu -6 304 132 2399 70 0 0 chr9 108393423 108393723 -9468904 - AluY SINE Alu -10 301 2 258 32 0 0 chr9 108393726 108393757 -9468870 + (TG)n Simple_repeat Simple_repeat 2 32 0 284 304 107 9 chr9 108393764 108393876 -9468751 - L2 LINE L2 -25 3247 3125 416 239 14 58 chr9 108394462 108394600 -9468027 - MLT1K LTR MaLR -289 299 168 248 374 66 11 chr9 108395168 108395350 -9467277 - MIR SINE MIR -34 228 37 443 226 99 91 chr9 108395376 108395420 -9467207 - MIR SINE MIR -19 243 201 2354 67 0 10 chr9 108395420 108395720 -9466907 + AluY SINE Alu 1 297 -14 443 226 99 91 chr9 108395720 108395764 -9466863 - MIR SINE MIR -61 201 159 2279 109 0 0 chr9 108395764 108396076 -9466551 + AluSx SINE Alu 1 312 0 443 226 99 91 chr9 108396076 108396207 -9466420 - MIR SINE MIR -103 159 21 2227 100 7 0 chr9 108396302 108396612 -9466015 - AluSx SINE Alu 0 312 1 469 119 60 24 chr9 108396619 108396703 -9465924 - FLAM_A SINE Alu -19 123 37 999 223 31 0 chr9 108396828 108397057 -9465570 - L1MB8 LINE L1 -320 5858 5623 2137 91 3 35 chr9 108397174 108397493 -9465134 - AluSc SINE Alu 0 309 1 1720 149 57 0 chr9 108397493 108397775 -9464852 - AluJb SINE Alu -14 298 1 2046 127 0 0 chr9 108397987 108398279 -9464348 + AluSx SINE Alu 1 292 -20 1706 153 32 4 chr9 108403905 108404186 -9458441 - AluSx SINE Alu -23 289 1 2087 113 0 3 chr9 108404263 108404554 -9458073 - AluSq SINE Alu -23 290 1 1699 161 23 13 chr9 108404585 108404721 -9457906 + AluSx SINE Alu 1 134 -178 2224 99 0 16 chr9 108404721 108405035 -9457592 + AluSq SINE Alu 1 309 -4 1699 161 23 13 chr9 108405035 108405203 -9457424 + AluSx SINE Alu 134 308 -4 1691 171 20 0 chr9 108408617 108408915 -9453712 + AluJo SINE Alu 1 304 -8 192 315 65 11 chr9 108410369 108410461 -9452166 + L2 LINE L2 3165 3261 -52 2217 83 16 19 chr9 108411614 108411926 -9450701 - AluSx SINE Alu -1 311 1 241 118 0 0 chr9 108411956 108411990 -9450637 + Alu SINE Alu 1 34 -274 954 128 0 45 chr9 108412667 108412823 -9449804 + AluSq/x SINE Alu 3 151 -161 321 111 0 0 chr9 108412823 108412868 -9449759 + AluSc SINE Alu 246 290 -9 1068 190 53 8 chr9 108413605 108413852 -9448775 + Charlie1a DNA MER1_type 75 332 -1123 * 2621 187 45 35 chr9 108413845 108414316 -9448311 + Charlie1a DNA MER1_type 483 963 -1798 1511 160 48 58 chr9 108414316 108414471 -9448156 - AluJb SINE Alu -12 290 138 1967 129 13 7 chr9 108414471 108414780 -9447847 - AluSx SINE Alu -1 311 1 1511 160 48 58 chr9 108414780 108414917 -9447710 - AluJb SINE Alu -164 138 1 2621 187 45 35 chr9 108414917 108415039 -9447588 + Charlie1a DNA MER1_type 963 1082 -373 2066 117 0 3 chr9 108415070 108415368 -9447259 - AluSx SINE Alu -15 297 1 364 261 52 9 chr9 108415380 108415495 -9447132 + Charlie1a DNA MER1_type 1336 1455 0 598 272 48 0 chr9 108415960 108416153 -9446474 + L1MC4a LINE L1 5621 5788 -333 2299 85 3 0 chr9 108416153 108416446 -9446181 - AluSx SINE Alu -18 294 1 598 272 48 0 chr9 108416446 108416480 -9446147 + L1MC4a LINE L1 5788 5819 -302 1898 152 0 0 chr9 108417612 108417902 -9444725 - AluJb SINE Alu -22 290 1 966 143 0 0 chr9 108421786 108421919 -9440708 + FLAM_C SINE Alu 1 133 0 1141 216 57 0 chr9 108422028 108422292 -9440335 + L1MB5 LINE L1 5896 6174 0 2148 71 7 20 chr9 108422306 108422602 -9440025 + AluSp SINE Alu 3 294 -19 2094 101 10 26 chr9 108422694 108423000 -9439627 - AluSg SINE Alu -9 301 1 2316 96 0 6 chr9 108423066 108423380 -9439247 - AluSq SINE Alu -1 312 1 683 210 0 49 chr9 108423385 108423528 -9439099 - AluJo SINE Alu -176 136 1 2020 106 7 7 chr9 108424126 108424440 -9438187 - AluSq SINE Alu 0 314 1 2197 122 0 0 chr9 108426154 108426466 -9436161 + AluSx SINE Alu 1 312 0 2188 106 0 10 chr9 108426577 108426888 -9435739 + AluSx SINE Alu 5 312 0 591 240 32 51 chr9 108427413 108427630 -9434997 + AluSq SINE Alu 101 313 0 718 171 39 8 chr9 108428248 108428377 -9434250 - AluJb SINE Alu -178 134 2 2117 118 3 0 chr9 108428560 108428848 -9433779 + AluSx SINE Alu 21 309 -3 2100 125 0 0 chr9 108428860 108429161 -9433466 + AluSx SINE Alu 1 301 0 189 0 0 0 chr9 108430116 108430137 -9432490 + (T)n Simple_repeat Simple_repeat 1 21 0 975 198 0 0 chr9 108430150 108430322 -9432305 + FAM SINE Alu 1 46 -3 2257 122 0 0 chr9 108430388 108430683 -9431944 + AluSx SINE Alu 1 295 -17 2355 85 3 0 chr9 108431579 108431872 -9430755 + AluSp SINE Alu 5 298 -15 2177 96 0 7 chr9 108431874 108432190 -9430437 + AluSg SINE Alu 1 314 0 949 188 12 18 chr9 108432285 108432455 -9430172 - AluJb SINE Alu -14 298 130 1234 214 26 53 chr9 108432519 108432639 -9429988 + AluJo SINE Alu 1 123 -189 2165 128 0 0 chr9 108432639 108432943 -9429684 - AluSx SINE Alu -8 304 1 1234 214 26 53 chr9 108432943 108433126 -9429501 + AluJo SINE Alu 123 296 -16 745 107 19 0 chr9 108433251 108433354 -9429273 + AluSg/x SINE Alu 94 198 -112 466 97 0 0 chr9 108433357 108433429 -9429198 + Alu SINE Alu 241 312 0 2133 123 7 0 chr9 108433432 108433734 -9428893 + AluSq SINE Alu 1 304 -9 320 120 0 0 chr9 108433734 108433784 -9428843 + AluY SINE Alu 133 182 -119 2367 84 3 0 chr9 108433854 108434151 -9428476 + AluSx SINE Alu 1 298 -14 1462 118 0 5 chr9 108434151 108434355 -9428272 + AluSg/x SINE Alu 106 308 -2 1862 176 49 10 chr9 108434377 108434479 -9428148 + L1MB5 LINE L1 5769 5866 -308 2020 156 10 0 chr9 108434479 108434786 -9427841 + AluJb SINE Alu 1 310 -2 1862 176 49 10 chr9 108434786 108435074 -9427553 + L1MB5 LINE L1 5866 6174 0 2064 155 0 0 chr9 108435213 108435509 -9427118 + AluSx SINE Alu 1 296 -16 2102 98 64 10 chr9 108435513 108435810 -9426817 + AluSq SINE Alu 1 313 0 2165 126 7 3 chr9 108435891 108436193 -9426434 + AluSx SINE Alu 1 303 -9 2351 91 0 0 chr9 108438050 108438336 -9424291 + AluSg SINE Alu 1 286 -24 193 214 11 11 chr9 108438336 108438354 -9424273 + (TA)n Simple_repeat Simple_repeat 1 18 -71 2012 155 0 3 chr9 108438354 108438650 -9423977 + AluSx SINE Alu 1 295 -17 193 214 11 11 chr9 108438650 108438720 -9423907 + (TA)n Simple_repeat Simple_repeat 17 89 0 2465 68 7 0 chr9 108439885 108440181 -9422446 - AluY SINE Alu -13 298 1 291 167 0 0 chr9 108440667 108440715 -9421912 - MLT1C LTR MaLR -2 465 418 1122 203 99 83 chr9 108440733 108441167 -9421460 - MLT1C LTR MaLR -26 441 1 287 240 83 50 chr9 108441177 108441298 -9421329 - MLT1H LTR MaLR -3 546 422 325 196 134 0 chr9 108441493 108441590 -9421037 - MLT1H LTR MaLR -369 180 71 2343 90 3 7 chr9 108441833 108442132 -9420495 + AluSx SINE Alu 1 298 -14 364 260 67 10 chr9 108442425 108442529 -9420098 + L2 LINE L2 3141 3250 -22 347 267 76 8 chr9 108442922 108443053 -9419574 - L1ME4a LINE L1 -18 6103 5964 2423 82 3 0 chr9 108443691 108443996 -9418631 - AluSp SINE Alu -7 306 1 2170 106 0 0 chr9 108444135 108444448 -9418179 - AluSg SINE Alu 0 313 1 1543 151 35 64 chr9 108444450 108444761 -9417866 - AluJb SINE Alu -10 302 1 1369 145 0 72 chr9 108444859 108445094 -9417533 - AluSg/x SINE Alu -18 294 77 316 202 11 32 chr9 108445511 108445605 -9417022 - AluY SINE Alu -142 159 68 1163 143 0 62 chr9 108445609 108445819 -9416808 - AluJo SINE Alu -115 197 1 500 196 98 21 chr9 108445825 108445968 -9416659 - MER3 DNA MER1_type -55 154 1 317 328 86 48 chr9 108446260 108446366 -9416261 + L3 LINE CR1 1204 1305 -272 2552 70 0 0 chr9 108446366 108446665 -9415962 + AluY SINE Alu 1 299 -12 2343 84 40 0 chr9 108446665 108446964 -9415663 + AluY SINE Alu 1 311 0 317 328 86 48 chr9 108446964 108447124 -9415503 + L3 LINE CR1 1304 1481 -96 2353 94 3 0 chr9 108447632 108447930 -9414697 + AluSp SINE Alu 3 301 -12 2083 103 53 0 chr9 108447946 108448227 -9414400 + AluSg SINE Alu 1 296 -14 1126 121 0 0 chr9 108448228 108448402 -9414225 + AluSg/x SINE Alu 134 307 0 1696 172 4 0 chr9 108448861 108449122 -9413505 + AluJb SINE Alu 6 267 -45 2229 121 0 10 chr9 108449123 108449430 -9413197 + AluSx SINE Alu 4 307 -5 349 198 16 16 chr9 108449557 108449683 -9412944 + (TATG)n Simple_repeat Simple_repeat 3 128 0 1788 163 6 44 chr9 108449808 108450128 -9412499 + AluJo SINE Alu 1 308 -4 391 299 66 52 chr9 108450784 108450912 -9411715 - MIR SINE MIR -12 250 116 2199 114 0 44 chr9 108450912 108451229 -9411398 + AluSx SINE Alu 1 303 -9 391 299 66 52 chr9 108451229 108451311 -9411316 - MIR SINE MIR -146 116 37 302 300 92 23 chr9 108452717 108452847 -9409780 + MIR SINE MIR 44 182 -80 342 0 0 0 chr9 108452947 108452985 -9409642 + (TG)n Simple_repeat Simple_repeat 2 39 0 186 243 43 43 chr9 108452995 108453065 -9409562 - L2 LINE L2 -65 3207 3138 183 42 0 0 chr9 108453221 108453245 -9409382 + (CTG)n Simple_repeat Simple_repeat 1 24 0 368 300 11 123 chr9 108454067 108454196 -9408431 + L2 LINE L2 2904 3046 -226 2369 88 10 0 chr9 108454196 108454492 -9408135 - AluSq SINE Alu -14 299 1 368 300 11 123 chr9 108454492 108454719 -9407908 + L2 LINE L2 3046 3220 -52 197 309 114 73 chr9 108454717 108454963 -9407664 - L2 LINE L2 -43 3229 2974 * 622 309 39 26 chr9 108455550 108455783 -9406844 - MIR SINE MIR -1 261 26 1553 99 31 0 chr9 108455972 108456195 -9406432 + MER30 DNA MER1_type 1 230 0 2582 72 0 0 chr9 108456294 108456598 -9406029 + AluY SINE Alu 1 304 -7 2020 137 17 0 chr9 108456612 108456904 -9405723 + AluSx SINE Alu 1 297 -15 272 278 93 9 chr9 108456913 108457021 -9405606 - MIR SINE MIR -4 258 142 421 69 0 0 chr9 108457025 108457083 -9405544 - Alu SINE Alu -15 297 240 2192 96 0 0 chr9 108457183 108457486 -9405141 + AluY SINE Alu 3 305 0 200 229 104 0 chr9 108457491 108457539 -9405088 - MIR SINE MIR -97 165 113 1069 168 0 77 chr9 108457870 108458090 -9404537 - AluJo SINE Alu -25 287 85 399 149 0 0 chr9 108458090 108458157 -9404470 - AluSg/x SINE Alu -52 248 182 556 110 0 55 chr9 108458157 108458248 -9404379 + AluJo/FRAM SINE Alu 203 288 -24 1233 252 47 68 chr9 108458291 108458442 -9404185 - L1ME3A LINE L1 -74 6096 5943 2334 122 0 0 chr9 108458442 108458754 -9403873 - AluSp SINE Alu -1 312 1 234 0 0 0 chr9 108458755 108458781 -9403846 + (TTA)n Simple_repeat Simple_repeat 3 28 0 2517 49 0 0 chr9 108458782 108459070 -9403557 - AluY SINE Alu -23 288 1 2183 125 0 3 chr9 108459072 108459369 -9403258 - AluSx SINE Alu -16 296 1 1233 252 47 68 chr9 108459369 108459486 -9403141 - L1ME3A LINE L1 -228 5942 5824 2442 84 0 0 chr9 108459486 108459784 -9402843 - AluSx SINE Alu -14 298 1 1233 252 47 68 chr9 108459784 108460079 -9402548 - L1ME3A LINE L1 -346 5824 5537 1921 131 7 4 chr9 108460185 108460459 -9402168 + AluSx SINE Alu 1 275 -37 2071 92 50 0 chr9 108460459 108460741 -9401886 - AluY SINE Alu -14 297 1 498 143 0 0 chr9 108460793 108460870 -9401757 + AluY SINE Alu 6 82 -228 2533 65 0 3 chr9 108461003 108461311 -9401316 - AluY SINE Alu -4 307 1 1295 77 0 0 chr9 108461341 108461497 -9401130 - AluSg/x SINE Alu -23 289 134 216 236 0 36 chr9 108461574 108461629 -9400998 + CT-rich Low_complexity Low_complexity 4 56 0 192 292 113 15 chr9 108462634 108462829 -9399798 + L2 LINE L2 2456 2669 -645 333 250 125 15 chr9 108463546 108463682 -9398945 + MIR SINE MIR 92 242 -20 222 259 259 0 chr9 108463823 108463935 -9398692 - MIR SINE MIR -15 247 107 1916 114 19 0 chr9 108464085 108464342 -9398285 + AluSx SINE Alu 1 263 -44 210 105 0 0 chr9 108464342 108464380 -9398247 + (CAA)n Simple_repeat Simple_repeat 3 40 0 324 176 235 0 chr9 108464865 108464967 -9397660 - MER112 DNA MER1_type -33 227 102 1511 175 59 30 chr9 108465025 108465328 -9397299 + AluJb SINE Alu 1 312 0 1489 72 0 6 chr9 108465421 108465601 -9397026 + AluSq SINE Alu 11 189 -124 2173 108 0 35 chr9 108465660 108465974 -9396653 + AluSx SINE Alu 1 303 -9 777 201 7 7 chr9 108466059 108466213 -9396414 - FRAM SINE Alu -11 165 12 2123 102 20 3 chr9 108466270 108466563 -9396064 + AluSx SINE Alu 1 298 -14 340 258 82 10 chr9 108466922 108467019 -9395608 - MIR SINE MIR -57 151 48 22 56 0 0 chr9 108467370 108467406 -9395221 + GC_rich Low_complexity Low_complexity 1 36 0 32 26 0 0 chr9 108467819 108467858 -9394769 + GC_rich Low_complexity Low_complexity 1 39 0 2277 70 13 41 chr9 108469851 108470167 -9392460 + AluSx SINE Alu 1 307 -5 299 145 132 26 chr9 108470911 108470987 -9391640 + FLAM_A SINE Alu 49 132 -1 279 254 0 0 chr9 108471658 108471796 -9390831 + GA-rich Low_complexity Low_complexity 1 138 0 216 0 0 0 chr9 108472479 108472503 -9390124 + (T)n Simple_repeat Simple_repeat 1 24 0 593 193 104 28 chr9 108474468 108474711 -9387916 + Tigger7 DNA MER2_type 2236 2487 0 1181 218 27 37 chr9 108475120 108475418 -9387209 + AluJo SINE Alu 2 296 -6 1993 149 3 3 chr9 108475603 108475904 -9386723 - AluSx SINE Alu -11 301 1 2506 82 0 0 chr9 108475921 108476226 -9386401 - AluY SINE Alu -5 306 2 815 114 9 0 chr9 108476358 108476472 -9386155 + AluSg/x SINE Alu 180 294 -16 2298 81 14 0 chr9 108476579 108476876 -9385751 - AluSp SINE Alu -10 303 3 2085 109 10 45 chr9 108477081 108477226 -9385401 + AluSx SINE Alu 1 150 -162 2558 53 7 0 chr9 108477226 108477529 -9385098 + AluY SINE Alu 2 306 -5 2085 109 10 45 chr9 108477529 108477694 -9384933 + AluSx SINE Alu 150 300 -12 758 175 0 29 chr9 108477990 108478127 -9384500 - FLAM_C SINE Alu 0 133 1 2060 128 0 22 chr9 108478177 108478356 -9384271 - AluSx SINE Alu 0 312 142 2222 98 13 28 chr9 108478356 108478674 -9383953 - AluSq SINE Alu 0 313 1 2060 128 0 22 chr9 108478674 108478813 -9383814 - AluSx SINE Alu -170 142 1 2385 71 0 3 chr9 108479487 108479796 -9382831 - AluSg SINE Alu -2 308 1 21 36 0 0 chr9 108480067 108480095 -9382532 + GC_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr9 108480503 108480524 -9382103 + GC_rich Low_complexity Low_complexity 1 21 0 237 246 9 64 chr9 108480533 108480643 -9381984 + C-rich Low_complexity Low_complexity 6 109 0 539 156 12 150 chr9 108482113 108482189 -9380438 + MIR SINE MIR 81 121 -141 2281 82 13 0 chr9 108482189 108482495 -9380132 + AluSp SINE Alu 4 313 0 539 156 12 150 chr9 108482495 108482591 -9380036 + MIR SINE MIR 121 229 -33 609 255 109 0 chr9 108485127 108485319 -9377308 + MIR SINE MIR 30 242 -20 192 341 47 12 chr9 108485358 108485443 -9377184 - L3 LINE CR1 -115 1462 1375 2148 101 0 3 chr9 108485446 108485744 -9376883 + AluSg1 SINE Alu 1 297 -12 2073 127 3 3 chr9 108485754 108486054 -9376573 + AluSx SINE Alu 1 300 -12 22 35 0 0 chr9 108486063 108486092 -9376535 + AT_rich Low_complexity Low_complexity 1 29 0 611 177 168 0 chr9 108486092 108486205 -9376422 + FLAM_C SINE Alu 2 133 0 1798 163 13 0 chr9 108486218 108486518 -9376109 + AluSx SINE Alu 1 304 -8 1788 153 14 14 chr9 108486525 108486660 -9375967 + AluJb SINE Alu 1 135 -177 2460 40 7 3 chr9 108486660 108486964 -9375663 + AluY SINE Alu 2 306 -5 1788 153 14 14 chr9 108486964 108487122 -9375505 + AluJb SINE Alu 134 294 -18 1234 106 6 6 chr9 108487125 108487305 -9375322 + AluSp SINE Alu 1 180 -133 1687 69 13 26 chr9 108487407 108487639 -9374988 - AluY SINE Alu -82 229 1 197 213 0 43 chr9 108487640 108487687 -9374940 - L3 LINE CR1 -193 1384 1340 272 321 102 66 chr9 108487748 108487901 -9374726 - L2 LINE L2 -64 3208 3039 2292 92 0 3 chr9 108487901 108488204 -9374423 - AluSx SINE Alu -10 302 1 272 321 102 66 chr9 108488204 108488324 -9374303 - L2 LINE L2 -233 3039 2925 420 113 0 0 chr9 108488383 108488445 -9374182 - AluSp/q SINE Alu -12 301 240 2035 101 0 0 chr9 108488446 108488713 -9373914 - AluSp SINE Alu -42 271 5 2162 68 41 14 chr9 108488717 108489009 -9373618 - AluY SINE Alu -11 300 1 2179 89 0 0 chr9 108489030 108489310 -9373317 - AluSx SINE Alu -32 280 1 2165 114 0 0 chr9 108489315 108489621 -9373006 - AluSx SINE Alu -6 306 1 192 211 0 0 chr9 108489880 108489918 -9372709 - MIR SINE MIR -61 147 110 921 181 0 12 chr9 108490865 108491036 -9371591 - AluSg SINE Alu -141 169 1 806 225 11 6 chr9 108491036 108491213 -9371414 + AluSg/x SINE Alu 120 297 -15 290 299 225 21 chr9 108491583 108491908 -9370719 + L2 LINE L2 2577 2967 -347 2136 125 7 0 chr9 108491908 108492212 -9370415 - AluSx SINE Alu -6 306 1 808 175 0 22 chr9 108492219 108492356 -9370271 - AluSp SINE Alu -178 135 2 2062 135 0 0 chr9 108492358 108492662 -9369965 - AluJb SINE Alu -8 304 1 2201 99 10 0 chr9 108493220 108493523 -9369104 - AluY SINE Alu -3 308 3 829 184 18 0 chr9 108493663 108493831 -9368796 + AluSg/x SINE Alu 135 305 -5 788 126 0 70 chr9 108494018 108494152 -9368475 + AluJo SINE Alu 1 126 -176 2388 87 0 0 chr9 108494152 108494463 -9368164 + AluY SINE Alu 1 311 0 1449 106 32 5 chr9 108494473 108494690 -9367937 + AluY SINE Alu 74 296 -15 989 159 6 31 chr9 108494693 108494856 -9367771 + AluJo SINE Alu 137 295 -7 2220 106 3 0 chr9 108495137 108495448 -9367179 + AluSx SINE Alu 1 312 0 380 317 109 20 chr9 108495717 108496020 -9366607 + L2 LINE L2 2920 3249 -64 422 259 53 8 chr9 108496334 108496465 -9366162 - MIR SINE MIR -113 149 13 396 331 98 34 chr9 108496591 108497074 -9365553 + L2 LINE L2 2676 3269 -3 317 175 113 52 chr9 108497662 108497759 -9364868 + L2 LINE L2 3170 3272 0 2087 122 0 0 chr9 108499500 108499794 -9362833 - AluSx SINE Alu -18 294 1 2234 109 0 0 chr9 108499809 108500111 -9362516 - AluSx SINE Alu -10 302 1 307 308 113 25 chr9 108500250 108500272 -9362355 + L2 LINE L2 3140 3159 -154 189 0 0 0 chr9 108500272 108500293 -9362334 + (TA)n Simple_repeat Simple_repeat 1 21 0 307 308 113 25 chr9 108500293 108500429 -9362198 + L2 LINE L2 3159 3312 -1 263 323 81 0 chr9 108500441 108500540 -9362087 - MIR SINE MIR -34 228 122 2145 100 23 3 chr9 108500746 108501046 -9361581 - AluSq SINE Alu -7 306 1 246 148 0 0 chr9 108502755 108502809 -9359818 + (CCG)n Simple_repeat Simple_repeat 2 55 0 1248 111 0 6 chr9 108503413 108503593 -9359034 + AluSq SINE Alu 1 179 -134 2041 101 6 58 chr9 108503631 108503958 -9358669 + AluSg SINE Alu 1 310 0 2334 73 0 19 chr9 108504041 108504358 -9358269 + AluY SINE Alu 1 311 0 1222 99 5 95 chr9 108504463 108504685 -9357942 + AluSg/x SINE Alu 91 292 -18 366 94 0 0 chr9 108504685 108504738 -9357889 + MIR SINE MIR 99 151 -111 2447 49 3 0 chr9 108504738 108505046 -9357581 + AluY SINE Alu 1 309 -2 1244 92 5 22 chr9 108505046 108505057 -9357570 + AluSc SINE Alu 124 134 -175 2487 51 0 6 chr9 108505057 108505370 -9357257 + AluY SINE Alu 1 311 0 1244 92 5 22 chr9 108505370 108505542 -9357085 + AluSc SINE Alu 134 304 -5 934 207 6 0 chr9 108505545 108505709 -9356918 + FRAM SINE Alu 1 165 -1 811 186 21 14 chr9 108505709 108505854 -9356773 - FRAM SINE Alu -30 146 1 2191 87 10 3 chr9 108505920 108506219 -9356408 - AluSq SINE Alu -8 305 5 2221 120 0 0 chr9 108506241 108506550 -9356077 - AluSc SINE Alu 0 309 1 1968 118 7 3 chr9 108506550 108506837 -9355790 - AluSq SINE Alu -15 298 11 186 43 0 0 chr9 108508063 108508086 -9354541 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 848 128 0 0 chr9 108508094 108508211 -9354416 - FLAM_C SINE Alu -15 118 2 777 258 96 27 chr9 108508432 108508683 -9353944 - L2 LINE L2 -145 3168 2887 1989 109 0 27 chr9 108508683 108508976 -9353651 + AluSx SINE Alu 14 298 -14 777 258 96 27 chr9 108508976 108509058 -9353569 - L2 LINE L2 -426 2887 2812 315 285 182 24 chr9 108509316 108509392 -9353235 + MIR SINE MIR 67 130 -132 2263 84 19 13 chr9 108509392 108509702 -9352925 + AluSx SINE Alu 1 312 0 315 285 182 24 chr9 108509702 108509790 -9352837 + MIR SINE MIR 130 257 -5 539 146 68 29 chr9 108510053 108510156 -9352471 + FLAM_C SINE Alu 30 136 -7 487 276 62 49 chr9 108510518 108510762 -9351865 + MIR SINE MIR 14 262 0 515 229 20 31 chr9 108511100 108511266 -9351361 - L1ME LINE L1 -675 5495 5329 1971 138 0 10 chr9 108511269 108511567 -9351060 - AluJb SINE Alu -15 297 3 635 190 158 0 chr9 108511575 108511759 -9350868 - L1ME LINE L1 -961 5185 4973 304 327 18 18 chr9 108511762 108511872 -9350755 - L1M4 LINE L1 -975 5240 5131 2323 154 67 40 chr9 108511889 108512366 -9350261 - L1MB7 LINE L1 0 6184 5690 2011 66 66 0 chr9 108512366 108512640 -9349987 - AluY SINE Alu -19 292 1 2323 154 67 40 chr9 108512640 108512682 -9349945 - L1MB7 LINE L1 -494 5690 5651 244 266 0 0 chr9 108513577 108513641 -9348986 + (TG)n Simple_repeat Simple_repeat 2 65 0 874 173 0 0 chr9 108513982 108514115 -9348512 + FLAM_C SINE Alu 1 133 0 383 357 0 8 chr9 108514256 108514382 -9348245 - MIR SINE MIR -107 155 31 319 296 177 49 chr9 108516168 108516190 -9346437 - L2 LINE L2 -6 3266 3248 2050 113 17 0 chr9 108516190 108516482 -9346145 + AluSq SINE Alu 6 302 -11 319 296 177 49 chr9 108516482 108516827 -9345800 - L2 LINE L2 -24 3248 2852 400 246 100 0 chr9 108517037 108517147 -9345480 + MLT1G1 LTR MaLR 3 123 -472 330 151 104 19 chr9 108518501 108518607 -9344020 - L1ME4a LINE L1 -13 6108 5994 2209 101 3 0 chr9 108518748 108519044 -9343583 - AluSq SINE Alu -16 297 1 901 213 23 4 chr9 108519044 108519302 -9343325 - L1MEc LINE L1 -1645 4570 4308 2177 101 10 0 chr9 108519302 108519608 -9343019 - AluSg SINE Alu -1 309 1 2192 116 0 0 chr9 108519611 108519914 -9342713 - AluSx SINE Alu -9 303 1 418 218 9 78 chr9 108519914 108520140 -9342487 - L1MEc LINE L1 -2291 3924 2310 1255 193 59 0 chr9 108520150 108520389 -9342238 - AluJb SINE Alu -25 287 35 1986 125 0 35 chr9 108520397 108520739 -9341888 - AluSc SINE Alu 0 331 1 2105 118 3 0 chr9 108520740 108521037 -9341590 - AluSp SINE Alu -15 298 1 739 160 29 11 chr9 108521168 108521343 -9341284 + CT-rich Low_complexity Low_complexity 1 178 0 297 104 0 0 chr9 108521347 108521395 -9341232 - AluSx SINE Alu -3 298 251 1062 117 5 75 chr9 108521395 108521583 -9341044 - AluSx SINE Alu -124 188 14 341 239 43 43 chr9 108521583 108521694 -9340933 - L1MEc LINE L1 -4070 2326 2213 2490 55 0 3 chr9 108521694 108522005 -9340622 - AluY SINE Alu -1 310 1 341 239 43 43 chr9 108522005 108522031 -9340596 - L1MEc LINE L1 -4182 2214 2189 1797 159 0 25 chr9 108522032 108522352 -9340275 - AluSx SINE Alu 0 312 1 2044 114 0 29 chr9 108522352 108522658 -9339969 - AluSg SINE Alu -12 298 1 359 243 39 58 chr9 108522660 108522763 -9339864 - L1M4 LINE L1 -639 5539 5439 1072 146 70 5 chr9 108522768 108522967 -9339660 - AluJo SINE Alu -100 212 1 834 129 0 8 chr9 108523252 108523384 -9339243 - AluY SINE Alu -180 131 1 655 133 0 9 chr9 108523461 108523566 -9339061 + AluSg/x SINE Alu 209 312 0 447 184 100 9 chr9 108523571 108523739 -9338888 + L1MA7 LINE L1 5492 5643 -537 1559 149 35 21 chr9 108523739 108524027 -9338600 + AluJo SINE Alu 1 292 -20 231 36 0 0 chr9 108524027 108524055 -9338572 + (GA)n Simple_repeat Simple_repeat 2 29 0 447 184 100 9 chr9 108524055 108524425 -9338202 + L1MA7 LINE L1 5643 6035 -145 1590 156 0 60 chr9 108524425 108524531 -9338096 + AluJo SINE Alu 23 134 -178 1717 156 10 3 chr9 108524531 108524820 -9337807 - AluJb SINE Alu -21 291 1 1590 156 0 60 chr9 108524820 108525014 -9337613 + AluJo SINE Alu 134 305 -7 447 184 100 9 chr9 108525014 108525050 -9337577 + L1MA7 LINE L1 6035 6066 -114 510 137 0 11 chr9 108525084 108525179 -9337448 + LTR41 LTR ERVL 1 94 -679 486 233 12 176 chr9 108525276 108525408 -9337219 + LTR41 LTR ERVL 340 415 -358 3255 151 2 12 chr9 108525408 108525910 -9336717 - LOR1a LTR ERV1 0 497 1 486 233 12 176 chr9 108525910 108526022 -9336605 + LTR41 LTR ERVL 415 544 -229 1130 145 0 0 chr9 108526023 108526189 -9336438 - AluSc SINE Alu -17 292 127 7040 64 9 24 chr9 108526189 108527372 -9335255 - SVA Other Other -723 1386 432 2236 113 7 0 chr9 108529167 108529460 -9333167 + AluSq SINE Alu 1 295 -18 1055 165 11 22 chr9 108529469 108529651 -9332976 + AluJb SINE Alu 132 311 -1 383 293 70 29 chr9 108529744 108529925 -9332702 + L1ME LINE L1 5472 5659 -462 2174 141 0 0 chr9 108529960 108530266 -9332361 + AluSx SINE Alu 1 306 -6 1213 144 55 135 chr9 108530282 108530443 -9332184 + AluJo SINE Alu 1 124 -188 2108 113 17 14 chr9 108530443 108530735 -9331892 + AluSq SINE Alu 1 293 -20 1213 144 55 135 chr9 108530735 108530900 -9331727 + AluJo SINE Alu 124 301 -11 928 286 73 9 chr9 108530950 108531293 -9331334 + L1ME3A LINE L1 5504 5868 -302 2351 95 3 0 chr9 108531321 108531616 -9331011 + AluSq SINE Alu 1 296 -17 2010 112 28 24 chr9 108531616 108531903 -9330724 + AluSc SINE Alu 1 288 -21 2308 106 0 3 chr9 108531904 108532206 -9330421 + AluSg1 SINE Alu 2 302 -7 982 157 0 0 chr9 108532222 108532375 -9330252 + AluSg/x SINE Alu 154 306 -6 1764 174 13 7 chr9 108532380 108532684 -9329943 + AluJb SINE Alu 1 306 -6 2323 104 7 0 chr9 108532684 108532991 -9329636 + AluSx SINE Alu 1 309 -3 472 271 52 0 chr9 108533044 108533199 -9329428 + L1ME3A LINE L1 6000 6162 -8 283 246 0 0 chr9 108533690 108533751 -9328876 + L3b LINE CR1 1342 1402 -181 2523 67 0 3 chr9 108535505 108535802 -9326825 - AluY SINE Alu -15 296 1 1747 164 0 71 chr9 108536492 108536568 -9326059 + AluJb SINE Alu 1 81 -231 2451 87 3 3 chr9 108536568 108536879 -9325748 - AluY SINE Alu 0 311 1 1747 164 0 71 chr9 108536879 108536950 -9325677 + AluJb SINE Alu 81 155 -157 2392 96 0 0 chr9 108536950 108537251 -9325376 + AluSg SINE Alu 1 301 -9 1747 164 0 71 chr9 108537251 108537415 -9325212 + AluJb SINE Alu 155 290 -22 2571 71 0 0 chr9 108537415 108537726 -9324901 + AluY SINE Alu 1 311 0 1747 164 0 71 chr9 108537726 108537748 -9324879 + AluJb SINE Alu 290 312 0 2572 71 0 0 chr9 108537756 108538067 -9324560 + AluY SINE Alu 1 311 0 391 222 9 37 chr9 108538070 108538097 -9324530 - L1ME4a LINE L1 -60 6061 6035 2424 99 3 0 chr9 108538097 108538409 -9324218 + AluSq SINE Alu 1 313 0 391 222 9 37 chr9 108538409 108538489 -9324138 - L1ME4a LINE L1 -86 6035 5957 254 149 0 21 chr9 108538815 108538862 -9323765 + AluY SINE Alu 1 46 -253 1581 132 24 17 chr9 108540748 108541036 -9321591 + L1MB3 LINE L1 5848 6137 -46 2576 77 0 0 chr9 108541036 108541347 -9321280 + AluSx SINE Alu 1 311 -1 23 0 0 0 chr9 108541775 108541798 -9320829 + AT_rich Low_complexity Low_complexity 1 23 0 2078 86 0 0 chr9 108541800 108542056 -9320571 - AluSg SINE Alu -54 256 1 1889 95 0 4 chr9 108542370 108542623 -9320004 + AluY SINE Alu 37 288 -23 471 78 0 0 chr9 108542623 108542687 -9319940 + (TA)n Simple_repeat Simple_repeat 2 65 0 1739 180 10 0 chr9 108542791 108543086 -9319541 + AluJb SINE Alu 7 304 -8 185 0 40 0 chr9 108543529 108543554 -9319073 + (TA)n Simple_repeat Simple_repeat 2 27 0 264 289 77 10 chr9 108545124 108545228 -9317399 - L2 LINE L2 -49 3223 3113 2178 95 14 7 chr9 108545707 108546003 -9316624 + AluY SINE Alu 1 298 -13 345 209 194 15 chr9 108546324 108546458 -9316169 - MIR SINE MIR -6 256 99 1817 176 14 0 chr9 108546458 108546754 -9315873 - AluJo SINE Alu -12 300 1 202 267 40 80 chr9 108546805 108546880 -9315747 + L2 LINE L2 2899 2970 -343 206 180 281 34 chr9 108546936 108547025 -9315602 + L2 LINE L2 3136 3246 -26 2160 137 3 0 chr9 108547045 108547351 -9315276 + AluSx SINE Alu 1 307 -5 928 76 0 0 chr9 108547351 108547470 -9315157 + L1PA11 LINE L1 6056 6174 0 1895 123 49 14 chr9 108547585 108547869 -9314758 + AluSg SINE Alu 1 294 -16 2421 77 3 0 chr9 108547871 108548168 -9314459 + AluSp SINE Alu 2 299 -14 1773 158 21 73 chr9 108548182 108548478 -9314149 + MER67B LTR ERV1 239 508 -153 566 190 112 0 chr9 108548478 108548594 -9314033 + FLAM_A SINE Alu 1 129 -4 1773 158 21 73 chr9 108548594 108548720 -9313907 + MER67B LTR ERV1 508 639 -22 188 264 57 0 chr9 108548734 108548787 -9313840 + L2 LINE L2 3215 3270 -2 347 221 45 183 chr9 108548830 108548909 -9313718 - MLT1K LTR MaLR 0 588 500 2422 106 0 0 chr9 108548909 108549211 -9313416 + AluSx SINE Alu 1 302 -10 347 221 45 183 chr9 108549211 108549443 -9313184 - MLT1K LTR MaLR -88 500 320 605 214 30 0 chr9 108549884 108550015 -9312612 - MIR SINE MIR -71 191 57 198 308 31 15 chr9 108550137 108550202 -9312425 + MIR SINE MIR 85 150 -112 991 187 0 0 chr9 108552262 108552428 -9310199 - FRAM SINE Alu 0 166 1 183 156 0 0 chr9 108553378 108553410 -9309217 + (TA)n Simple_repeat Simple_repeat 1 32 0 851 231 129 16 chr9 108553445 108553701 -9308926 - AluSg1 SINE Alu -1 308 24 642 279 96 36 chr9 108554376 108554875 -9307752 - L1M4 LINE L1 -1320 4826 4298 2139 124 0 13 chr9 108554900 108555206 -9307421 - AluSc SINE Alu -7 302 1 475 179 114 65 chr9 108557368 108557491 -9305136 - FLAM_A SINE Alu 0 133 5 325 264 36 71 chr9 108559359 108559499 -9303128 - L1MCa LINE L1 -4328 2098 1964 2165 124 0 3 chr9 108559702 108560000 -9302627 + AluSg SINE Alu 1 297 -13 2226 116 3 3 chr9 108560001 108560304 -9302323 + AluSg SINE Alu 1 303 -7 1776 184 0 9 chr9 108561596 108561911 -9300716 + AluSx SINE Alu 1 312 0 466 292 90 11 chr9 108561944 108562122 -9300505 + MIR SINE MIR 57 248 -14 929 122 8 0 chr9 108562236 108562359 -9300268 - AluSq/x SINE Alu -189 124 1 1869 139 17 26 chr9 108562359 108562661 -9299966 - AluJb SINE Alu -13 299 1 2152 93 3 17 chr9 108562701 108563016 -9299611 + AluSp SINE Alu 1 311 0 2448 101 0 0 chr9 108563024 108563330 -9299297 + AluSq SINE Alu 1 306 -7 243 0 0 0 chr9 108563330 108563357 -9299270 + (TA)n Simple_repeat Simple_repeat 1 27 0 2289 112 0 3 chr9 108565600 108565896 -9296731 + AluSq SINE Alu 1 295 -18 2105 121 11 0 chr9 108566073 108566385 -9296242 + AluSq SINE Alu 1 315 0 1616 175 7 4 chr9 108567310 108567579 -9295048 + AluJo SINE Alu 5 274 -38 222 299 47 47 chr9 108567687 108567794 -9294833 + MIR3 SINE MIR 85 191 -17 2305 95 7 0 chr9 108568343 108568639 -9293988 - AluSc SINE Alu -11 298 1 185 386 65 28 chr9 108568686 108568901 -9293726 + L2 LINE L2 2804 3026 -246 1438 175 31 58 chr9 108569062 108569227 -9293400 - AluJb SINE Alu 0 307 153 2335 105 0 0 chr9 108569227 108569523 -9293104 - AluSg SINE Alu -14 296 1 1438 175 31 58 chr9 108569523 108569672 -9292955 - AluJb SINE Alu -154 153 1 372 147 31 3 chr9 108569725 108569949 -9292678 + AluJo SINE Alu 1 302 0 21 36 0 0 chr9 108570228 108570256 -9292371 + AT_rich Low_complexity Low_complexity 1 28 0 306 286 133 29 chr9 108570384 108570594 -9292033 + L1M4 LINE L1 4269 4500 -1646 2803 33 0 0 chr9 108572411 108572718 -9289909 + AluY SINE Alu 1 307 -4 2210 117 7 3 chr9 108574274 108574574 -9288053 - AluSx SINE Alu -11 301 1 207 0 0 0 chr9 108574870 108574893 -9287734 + (A)n Simple_repeat Simple_repeat 1 23 0 233 270 60 60 chr9 108575351 108575451 -9287176 + MIR SINE MIR 42 141 -67 23 0 0 0 chr9 108577712 108577735 -9284892 + GC_rich Low_complexity Low_complexity 1 23 0 182 292 161 36 chr9 108579818 108579955 -9282672 - MIR SINE MIR -29 233 80 343 197 0 0 chr9 108630647 108630708 -9231919 + AluSp/q SINE Alu 212 272 -31 828 120 8 0 chr9 108630719 108630836 -9231791 - FLAM_C SINE Alu -25 118 1 1477 164 35 32 chr9 108630910 108631221 -9231406 - AluJo SINE Alu 0 312 1 1428 54 5 11 chr9 108631334 108631554 -9231073 - AluY SINE Alu 0 314 96 306 350 17 8 chr9 108631657 108631728 -9230899 + MIR SINE MIR 82 157 -105 2044 120 0 3 chr9 108631728 108632055 -9230572 + AluSx SINE Alu 1 326 0 306 350 17 8 chr9 108632055 108632102 -9230525 + MIR SINE MIR 157 202 -60 238 330 61 9 chr9 108632157 108632272 -9230355 + L2 LINE L2 3151 3271 -1 1187 125 69 76 chr9 108632439 108632674 -9229953 - Tigger3(Golem) DNA MER2_type -257 2772 2537 2404 66 0 0 chr9 108632674 108632975 -9229652 - AluY SINE Alu -10 301 1 1187 125 69 76 chr9 108632975 108632997 -9229630 - Tigger3(Golem) DNA MER2_type -492 2537 2516 1297 156 66 87 chr9 108632997 108633203 -9229424 - AluSx SINE Alu 0 328 129 1822 150 13 3 chr9 108633203 108633509 -9229118 - AluSx SINE Alu -3 309 1 1297 156 66 87 chr9 108633509 108633635 -9228992 - AluSx SINE Alu -199 129 2 1187 125 69 76 chr9 108633635 108633663 -9228964 - Tigger3(Golem) DNA MER2_type -513 2516 2487 2073 127 3 3 chr9 108633673 108633973 -9228654 - AluSx SINE Alu -12 300 1 1709 100 0 4 chr9 108633983 108634222 -9228405 - AluSg1 SINE Alu -13 296 59 198 294 54 54 chr9 108634543 108634635 -9227992 + MIR SINE MIR 90 181 -81 237 33 0 0 chr9 108634798 108634828 -9227799 + (CA)n Simple_repeat Simple_repeat 1 30 0 2038 123 3 3 chr9 108634894 108635194 -9227433 + AluSx SINE Alu 1 300 -12 1440 133 91 11 chr9 108635209 108635494 -9227133 - L1MB3 LINE L1 0 6183 5876 823 107 15 38 chr9 108635621 108635752 -9226875 + AluSg/x SINE Alu 171 298 -12 328 316 44 9 chr9 108635754 108635868 -9226759 - MIR3 SINE MIR -76 132 15 646 299 40 39 chr9 108636435 108636870 -9225757 - L1ME3A LINE L1 -150 6014 5589 510 284 83 25 chr9 108637147 108637351 -9225276 - MIR SINE MIR -16 246 31 355 288 266 0 chr9 108637971 108638148 -9224479 + MIR SINE MIR 36 259 -3 1744 80 0 4 chr9 108639288 108639514 -9223113 + AluSp SINE Alu 76 300 -13 576 285 113 5 chr9 108639585 108639806 -9222821 - MIR SINE MIR -2 260 16 473 313 28 11 chr9 108639835 108640011 -9222616 + MIR3 SINE MIR 15 193 -15 559 280 219 7 chr9 108640072 108640140 -9222487 + MER102b DNA MER1_type 1 53 -1375 2258 85 0 0 chr9 108640140 108640435 -9222192 - AluSg1 SINE Alu -14 295 1 559 280 219 7 chr9 108640435 108640645 -9221982 + MER102b DNA MER1_type 53 338 -3 227 296 31 20 chr9 108640647 108640745 -9221882 - MIR3 SINE MIR -48 160 62 2360 81 0 0 chr9 108642142 108642440 -9220187 + AluSq SINE Alu 1 298 -15 1640 172 17 3 chr9 108642548 108642844 -9219783 + AluSx SINE Alu 1 300 -12 629 218 38 8 chr9 108642983 108643116 -9219511 + FRAM SINE Alu 20 156 -20 200 294 8 92 chr9 108643345 108643398 -9219229 - MER5B DNA MER1_type -69 109 70 2156 98 0 3 chr9 108643398 108643694 -9218933 - AluSc SINE Alu -14 295 1 200 294 8 92 chr9 108643694 108643759 -9218868 - MER5B DNA MER1_type -108 70 1 275 273 50 31 chr9 108643910 108644071 -9218556 - L1ME4a LINE L1 -17 6104 5941 1556 161 7 58 chr9 108644072 108644233 -9218394 - AluJo SINE Alu -18 294 155 2428 64 0 13 chr9 108644233 108644544 -9218083 - AluY SINE Alu -4 307 1 1556 161 7 58 chr9 108644544 108644692 -9217935 - AluJo SINE Alu -157 155 1 1931 132 4 0 chr9 108644720 108645021 -9217606 - AluSx SINE Alu 0 302 1 1689 164 10 20 chr9 108645213 108645517 -9217110 - AluSx SINE Alu -11 301 1 339 336 98 0 chr9 108645688 108645831 -9216796 + MIR SINE MIR 48 204 -58 2287 52 17 7 chr9 108646870 108647160 -9215467 + AluY SINE Alu 1 293 -18 1729 163 0 17 chr9 108647348 108647642 -9214985 + AluJo SINE Alu 1 289 -23 304 291 29 18 chr9 108647804 108647938 -9214689 + MIR SINE MIR 16 150 -62 468 288 107 64 chr9 108648866 108648937 -9213690 - L2 LINE L2 -16 3256 3189 1716 121 0 4 chr9 108648937 108649186 -9213441 - AluSx SINE Alu -63 249 2 468 288 107 64 chr9 108649186 108649534 -9213093 - L2 LINE L2 -83 3189 2819 181 231 0 77 chr9 108649598 108649650 -9212977 - L2 LINE L2 -7 3265 3218 194 0 39 0 chr9 108650510 108650536 -9212091 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 2184 96 7 3 chr9 108650937 108651238 -9211389 - AluSq SINE Alu -11 302 1 23 0 0 0 chr9 108652583 108652606 -9210021 + GC_rich Low_complexity Low_complexity 1 23 0 29 78 0 0 chr9 108652688 108652752 -9209875 + GC_rich Low_complexity Low_complexity 1 64 0 299 265 71 10 chr9 108653432 108653530 -9209097 + L1MC4a LINE L1 5783 5886 -1922 2381 54 0 3 chr9 108653551 108653846 -9208781 + AluY SINE Alu 1 294 -17 338 290 14 58 chr9 108654119 108654190 -9208437 - MIR SINE MIR -110 152 88 2395 57 0 3 chr9 108654190 108654486 -9208141 + AluY SINE Alu 1 295 -16 338 290 14 58 chr9 108654486 108654552 -9208075 - MIR SINE MIR -174 88 21 229 288 0 17 chr9 108654597 108654656 -9207971 + L2 LINE L2 3209 3266 -6 201 294 56 56 chr9 108654664 108654790 -9207837 + MIR SINE MIR 17 142 -120 248 154 96 0 chr9 108654857 108654909 -9207718 - MIR SINE MIR -112 150 94 231 356 129 26 chr9 108655012 108655276 -9207351 - L2 LINE L2 -31 3241 2951 2514 44 0 0 chr9 108655605 108655903 -9206724 - AluY SINE Alu -13 298 1 318 196 0 0 chr9 108655980 108656036 -9206591 + MIR SINE MIR 85 140 -68 1949 143 7 0 chr9 108656497 108656791 -9205836 + AluSx SINE Alu 1 296 -16 434 206 0 47 chr9 108656864 108656971 -9205656 - MIR SINE MIR -61 147 46 301 287 114 0 chr9 108657070 108657204 -9205423 + MER20B DNA MER1_type 69 217 -2 2142 118 3 0 chr9 108657734 108658038 -9204589 + AluSx SINE Alu 1 305 -7 1064 120 0 42 chr9 108658038 108658205 -9204422 + AluSg/x SINE Alu 134 293 -19 1744 92 0 0 chr9 108658305 108658532 -9204095 - AluSq SINE Alu -86 227 1 1276 104 0 6 chr9 108658540 108658723 -9203904 - AluSg/x SINE Alu -11 299 118 1857 87 66 35 chr9 108658728 108659017 -9203610 - AluSx SINE Alu -14 298 1 533 231 29 42 chr9 108659043 108659153 -9203474 + Tigger6 DNA MER2_type 1318 1428 -169 779 172 0 8 chr9 108659153 108659281 -9203346 - FLAM_C SINE Alu -4 129 3 533 231 29 42 chr9 108659281 108659408 -9203219 + Tigger6 DNA MER2_type 1428 1552 -45 2125 121 0 10 chr9 108659408 108659714 -9202913 - AluSx SINE Alu -9 303 1 2152 97 3 3 chr9 108659721 108660019 -9202608 - AluSx SINE Alu -14 298 1 2366 90 0 0 chr9 108660031 108660342 -9202285 - AluY SINE Alu 0 311 1 2186 85 3 16 chr9 108660354 108660659 -9201968 - AluSc SINE Alu -8 301 1 270 240 0 0 chr9 108660661 108660711 -9201916 + Tigger6 DNA MER2_type 1548 1597 0 227 56 56 0 chr9 108660712 108660748 -9201879 + (TATATG)n Simple_repeat Simple_repeat 4 41 0 1724 153 11 11 chr9 108660778 108661065 -9201562 - AluJo SINE Alu -15 297 11 1858 149 0 3 chr9 108661149 108661470 -9201157 - AluJb SINE Alu 0 320 1 2950 186 14 27 chr9 108661549 108661852 -9200775 - L1MB5 LINE L1 0 6174 5881 1466 194 38 3 chr9 108661852 108662140 -9200487 - AluJb SINE Alu -14 298 1 2950 186 14 27 chr9 108662140 108662423 -9200204 - L1MB5 LINE L1 -293 5881 5596 2090 92 0 0 chr9 108662475 108662748 -9199879 + AluSx SINE Alu 25 297 -15 791 169 0 0 chr9 108662772 108662896 -9199731 + FLAM_C SINE Alu 2 125 -18 653 195 0 73 chr9 108662911 108663045 -9199582 - L1MB5 LINE L1 -1144 5002 4881 2292 65 0 3 chr9 108663045 108663335 -9199292 + AluY SINE Alu 2 290 -21 653 195 0 73 chr9 108663335 108663364 -9199263 - L1MB5 LINE L1 -1265 4881 4851 1906 148 0 13 chr9 108663366 108663502 -9199125 + AluJo SINE Alu 1 137 -175 2282 100 0 0 chr9 108663502 108663802 -9198825 + AluSc SINE Alu 1 300 -9 1906 148 0 13 chr9 108663802 108663976 -9198651 + AluJo SINE Alu 137 307 -5 813 170 0 27 chr9 108663979 108664126 -9198501 + AluJb SINE Alu 166 308 -4 777 141 73 5 chr9 108664138 108664325 -9198302 + AluSx SINE Alu 2 293 -17 527 187 15 60 chr9 108664325 108664434 -9198193 - L1MB5 LINE L1 -1291 4855 4752 2431 57 0 3 chr9 108664434 108664735 -9197892 + AluY SINE Alu 1 300 -11 527 187 15 60 chr9 108664735 108664759 -9197868 - L1MB5 LINE L1 -1394 4752 4728 325 274 103 111 chr9 108664746 108665028 -9197599 - L1ME4a LINE L1 -222 5899 5616 * 1748 180 3 0 chr9 108665028 108665328 -9197299 + AluJo SINE Alu 1 301 -11 325 274 103 111 chr9 108665328 108665587 -9197040 - L1ME4a LINE L1 -505 5616 5369 2085 96 28 10 chr9 108665587 108665878 -9196749 - AluSx SINE Alu -16 296 1 483 258 75 11 chr9 108665878 108666064 -9196563 - L1ME4a LINE L1 -1258 4888 4691 1879 135 7 3 chr9 108666068 108666364 -9196263 - AluJb SINE Alu -4 308 12 446 234 122 45 chr9 108666373 108666595 -9196032 - L1MC5 LINE L1 -543 7418 7180 185 315 14 41 chr9 108666651 108666724 -9195903 + MIR SINE MIR 166 236 -26 321 26 0 0 chr9 108666729 108666767 -9195860 + (TTG)n Simple_repeat Simple_repeat 2 39 0 194 339 0 0 chr9 108667204 108667263 -9195364 + L2 LINE L2 3245 3303 -10 340 324 19 0 chr9 108667402 108667507 -9195120 + MIR SINE MIR 86 192 -70 181 329 141 0 chr9 108667680 108667765 -9194862 - MIR SINE MIR -79 129 33 916 172 11 22 chr9 108667783 108667963 -9194664 - AluSg/x SINE Alu -1 311 134 2075 123 0 3 chr9 108667964 108668266 -9194361 - AluSx SINE Alu -11 301 1 312 274 90 18 chr9 108669185 108669368 -9193259 + MIR3 SINE MIR 10 208 -54 1908 134 3 28 chr9 108669515 108669697 -9192930 - AluSq SINE Alu 0 313 141 2143 110 0 35 chr9 108669697 108670014 -9192613 - AluSg SINE Alu -4 306 1 1908 134 3 28 chr9 108670014 108670152 -9192475 - AluSq SINE Alu -172 141 1 234 327 168 0 chr9 108670422 108670535 -9192092 + MIR SINE MIR 61 192 -70 2063 106 7 10 chr9 108670731 108671032 -9191595 + AluSx SINE Alu 1 300 -12 2263 113 0 0 chr9 108671218 108671528 -9191099 - AluSq SINE Alu -3 310 1 295 200 0 17 chr9 108672060 108672120 -9190507 - L2 LINE L2 -224 3048 2990 1057 172 0 6 chr9 108672197 108672371 -9190256 - AluJb SINE Alu -7 305 133 210 37 0 0 chr9 108672371 108672398 -9190229 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1433 122 44 95 chr9 108672398 108672693 -9189934 - AluJb SINE Alu -28 284 5 2221 85 0 10 chr9 108672696 108672867 -9189760 - AluSc SINE Alu -7 302 134 2119 65 6 77 chr9 108672867 108673191 -9189436 - AluSg SINE Alu -9 301 1 2221 85 0 10 chr9 108673191 108673324 -9189303 - AluSc SINE Alu -175 134 1 611 323 56 9 chr9 108673334 108673566 -9189061 - L1ME LINE L1 -302 5819 5577 655 193 35 0 chr9 108673572 108673686 -9188941 + FLAM_A SINE Alu 14 131 -11 216 158 0 0 chr9 108673812 108673850 -9188777 + T-rich Low_complexity Low_complexity 1 38 0 1863 130 29 0 chr9 108673863 108674182 -9188445 + AluSq SINE Alu 1 327 0 238 330 61 9 chr9 108674284 108674399 -9188228 + L2 LINE L2 3151 3271 -1 266 289 82 22 chr9 108675664 108675799 -9186828 + MIR SINE MIR 85 227 -35 2294 81 0 0 chr9 108675810 108676107 -9186520 - AluSx SINE Alu -15 297 1 2202 114 0 0 chr9 108676521 108676827 -9185800 + AluSx SINE Alu 2 307 -5 326 154 0 15 chr9 108676848 108676913 -9185714 + GA-rich Low_complexity Low_complexity 1 64 0 422 283 64 75 chr9 108677818 108677955 -9184672 + MER91A DNA MER1_type 4 141 -55 2078 99 10 13 chr9 108677955 108678267 -9184360 - AluY SINE Alu 0 311 1 2242 93 0 26 chr9 108678267 108678580 -9184047 - AluSx SINE Alu -7 305 1 422 283 64 75 chr9 108678580 108678628 -9183999 + MER91A DNA MER1_type 139 188 -8 274 257 97 18 chr9 108678611 108678724 -9183903 + MIR3 SINE MIR 81 202 -6 * 2084 103 10 10 chr9 108678835 108679146 -9183481 - AluSx SINE Alu -1 311 1 238 33 0 0 chr9 108680182 108680212 -9182415 + (TTG)n Simple_repeat Simple_repeat 1 180 0 2026 111 4 0 chr9 108680212 108680492 -9182135 - AluSx SINE Alu -31 281 1 237 33 0 0 chr9 108680558 108680588 -9182039 + (TG)n Simple_repeat Simple_repeat 1 30 0 198 294 54 54 chr9 108680751 108680843 -9181784 - MIR SINE MIR -81 181 90 368 298 11 0 chr9 108681004 108681098 -9181529 + MER21B LTR ERV1 1 95 -768 2306 60 7 17 chr9 108681359 108681657 -9180970 + AluY SINE Alu 1 295 -16 2103 110 3 0 chr9 108681668 108681960 -9180667 + AluSx SINE Alu 1 293 -19 874 184 0 18 chr9 108681968 108682131 -9180496 + AluJo SINE Alu 13 172 -140 2335 86 3 0 chr9 108682159 108682463 -9180164 + AluSp SINE Alu 1 305 -8 1825 124 7 42 chr9 108682463 108682770 -9179857 + AluSx SINE Alu 1 296 -16 1036 136 0 0 chr9 108682877 108683032 -9179595 + FRAM SINE Alu 1 154 -22 295 189 222 0 chr9 108683710 108683800 -9178827 - L2 LINE L2 -4 3309 3200 265 284 40 0 chr9 108684439 108684513 -9178114 - MIR3 SINE MIR -28 180 104 2075 135 0 0 chr9 108684579 108684883 -9177744 - AluSx SINE Alu -8 304 1 2145 79 3 14 chr9 108685160 108685451 -9177176 - AluSx SINE Alu -14 298 11 291 253 46 11 chr9 108685454 108685541 -9177086 + MIR SINE MIR 82 171 -91 651 190 0 33 chr9 108686282 108686403 -9176224 - FRAM SINE Alu -46 130 14 2171 125 0 0 chr9 108687467 108687772 -9174855 + AluSx SINE Alu 3 307 -5 277 184 118 0 chr9 108688406 108688482 -9174145 + MIR SINE MIR 45 129 -79 263 28 28 0 chr9 108688788 108688824 -9173803 + (CA)n Simple_repeat Simple_repeat 2 38 0 224 242 0 48 chr9 108690013 108690075 -9172552 - MIR SINE MIR -91 171 113 3055 119 68 4 chr9 108693049 108693545 -9169082 + MER1A DNA MER1_type 2 529 0 210 208 19 0 chr9 108693572 108693625 -9169002 + MIR SINE MIR 81 134 -74 * 262 225 0 50 chr9 108693618 108693698 -9168929 - MIR SINE MIR -80 182 107 23 54 0 0 chr9 108694309 108694346 -9168281 + GC_rich Low_complexity Low_complexity 1 37 0 2455 65 3 0 chr9 108694964 108695274 -9167353 - AluSp SINE Alu -2 311 1 246 279 87 56 chr9 108695274 108695435 -9167192 + L1ME LINE L1 5460 5625 -496 1325 199 20 34 chr9 108695557 108695717 -9166910 - AluSx SINE Alu -19 293 132 1833 88 92 15 chr9 108695717 108695990 -9166637 - AluSg SINE Alu -16 294 1 1580 174 31 14 chr9 108696000 108696287 -9166340 - AluJb SINE Alu -16 296 5 1584 123 4 0 chr9 108696288 108696515 -9166112 + AluSx SINE Alu 64 291 -21 1325 199 20 34 chr9 108696515 108696638 -9165989 - AluSx SINE Alu -188 124 1 1340 110 57 113 chr9 108696639 108696687 -9165940 - L1MA7 LINE L1 -162 6129 6080 2291 95 0 3 chr9 108696687 108696991 -9165636 - AluSp SINE Alu -10 303 1 1340 110 57 113 chr9 108696991 108697027 -9165600 - L1MA7 LINE L1 -211 6080 6044 847 133 0 22 chr9 108697027 108697162 -9165465 + FLAM_C SINE Alu 1 132 -1 1340 110 57 113 chr9 108697162 108697399 -9165228 - L1MA7 LINE L1 -247 6044 5824 2075 110 0 7 chr9 108697399 108697690 -9164937 - AluSg SINE Alu -21 289 1 1340 110 57 113 chr9 108697690 108697701 -9164926 - L1MA7 LINE L1 -467 5824 5814 530 117 19 19 chr9 108697695 108697798 -9164829 - L1MA7 LINE L1 -852 5482 5380 * 770 99 0 2 chr9 108697809 108698042 -9164585 - AluSc SINE Alu -3 306 32 607 154 7 60 chr9 108698042 108698118 -9164509 - L1MA7 LINE L1 -782 5364 5298 2033 123 3 7 chr9 108698118 108698428 -9164199 - AluSx SINE Alu -3 309 1 607 154 7 60 chr9 108698428 108698500 -9164127 - L1MA7 LINE L1 -848 5298 5224 1769 182 0 3 chr9 108698795 108699108 -9163519 - AluSx SINE Alu 0 312 1 277 184 0 0 chr9 108699109 108699158 -9163469 - FLAM_A SINE Alu -39 94 46 3582 205 22 56 chr9 108699158 108700161 -9162466 + LTR5 LTR ERVK 1 969 0 4258 140 23 4 chr9 108700161 108700860 -9161767 + HERVK LTR ERVK 1 712 -6531 16230 120 7 0 chr9 108700971 108703411 -9159216 + HERVK LTR ERVK 3006 5461 -1782 10074 177 9 14 chr9 108703442 108705372 -9157255 + HERVK LTR ERVK 5486 7241 -2 3080 219 19 60 chr9 108705374 108706300 -9156327 + LTR5 LTR ERVK 1 888 -81 990 128 0 0 chr9 108706561 108706702 -9155925 + AluJb SINE Alu 1 141 -171 2138 79 4 4 chr9 108706705 108707019 -9155608 + AluY SINE Alu 1 314 0 1477 164 35 32 chr9 108707132 108707443 -9155184 + AluJo SINE Alu 1 312 0 837 111 8 0 chr9 108707517 108707634 -9154993 + AluJo/FLAM SINE Alu 1 118 -194 1950 124 18 3 chr9 108707634 108707916 -9154711 - AluSx SINE Alu -26 286 1 860 137 0 8 chr9 108707919 108708050 -9154577 - AluJo/FLAM SINE Alu -172 130 1 309 341 78 6 chr9 108708180 108708347 -9154280 - L1ME LINE L1 -281 5840 5662 1869 131 3 32 chr9 108708381 108708508 -9154119 + AluJo SINE Alu 9 138 -174 2128 108 0 3 chr9 108708508 108708805 -9153822 + AluSx SINE Alu 1 296 -16 2227 67 0 7 chr9 108708807 108709136 -9153491 + AluY SINE Alu 1 327 0 1869 131 3 32 chr9 108709136 108709316 -9153311 + AluJo SINE Alu 139 312 0 703 83 21 0 chr9 108709326 108709422 -9153205 + AluS SINE Alu 2 99 -214 710 324 60 29 chr9 108709531 108709712 -9152915 + L2 LINE L2 2851 3025 -288 2290 92 3 0 chr9 108709712 108710016 -9152611 + AluSg SINE Alu 1 305 -5 710 324 60 29 chr9 108710016 108710251 -9152376 + L2 LINE L2 3025 3280 -33 1057 238 60 50 chr9 108710255 108710654 -9151973 - L1MC3 LINE L1 -487 7298 6896 1198 227 15 33 chr9 108710654 108710989 -9151638 + MLT1A1 LTR MaLR 1 329 -36 226 228 25 76 chr9 108711090 108711169 -9151458 - Alu SINE Alu -7 294 220 1631 156 52 0 chr9 108711169 108711438 -9151189 - AluSx SINE Alu -29 283 1 1882 134 13 22 chr9 108711518 108711831 -9150796 - AluSq SINE Alu -3 310 1 2053 63 50 75 chr9 108712045 108712364 -9150263 - AluY SINE Alu 0 311 1 1562 127 0 92 chr9 108712660 108712799 -9149828 + AluSx SINE Alu 1 151 -161 2139 124 0 3 chr9 108712799 108713106 -9149521 + AluSx SINE Alu 5 310 -2 1514 104 0 43 chr9 108713116 108713347 -9149280 + AluSg/x SINE Alu 85 305 -5 1562 127 0 92 chr9 108713347 108713480 -9149147 + AluSx SINE Alu 160 258 -54 1865 121 0 11 chr9 108713581 108713854 -9148773 - AluSq SINE Alu -32 281 12 2021 109 20 3 chr9 108713854 108714157 -9148470 - AluSq SINE Alu -5 308 1 2003 116 14 3 chr9 108714160 108714453 -9148174 - AluSx SINE Alu -14 298 3 1379 196 68 14 chr9 108714493 108714773 -9147854 + AluJb SINE Alu 1 295 -17 2299 64 17 0 chr9 108714964 108715261 -9147366 + AluSx SINE Alu 1 302 -10 891 188 0 35 chr9 108715261 108715431 -9147196 + AluJo/FRAM SINE Alu 137 300 -12 475 286 20 16 chr9 108715432 108715680 -9146947 + L1ME4a LINE L1 5698 5946 -175 2186 100 7 0 chr9 108715726 108716025 -9146602 - AluSq SINE Alu -12 301 1 1866 148 47 0 chr9 108716082 108716380 -9146247 - AluSx SINE Alu 0 312 1 2035 129 10 3 chr9 108716387 108716689 -9145938 - AluSq SINE Alu -7 306 3 2110 126 0 3 chr9 108716691 108717001 -9145626 - AluSx SINE Alu -3 309 1 234 276 60 17 chr9 108717002 108717118 -9145509 - L1M4 LINE L1 -878 5268 5148 1843 113 64 3 chr9 108717203 108717485 -9145142 - AluSq SINE Alu -14 299 1 1985 111 14 3 chr9 108717531 108717820 -9144807 - AluSq SINE Alu -20 293 2 473 138 35 11 chr9 108717873 108717960 -9144667 + AluJ/FRAM SINE Alu 216 304 -8 360 0 0 0 chr9 108718017 108718057 -9144570 + (TG)n Simple_repeat Simple_repeat 2 41 0 232 175 63 0 chr9 108718188 108718251 -9144376 - Alu SINE Alu -2 298 232 32 0 0 0 chr9 108718381 108718413 -9144214 + AT_rich Low_complexity Low_complexity 1 32 0 2284 57 0 3 chr9 108719125 108719446 -9143181 + AluY SINE Alu 1 320 0 255 286 98 68 chr9 108719493 108719626 -9143001 - MIR SINE MIR -9 253 117 1225 113 0 26 chr9 108720156 108720350 -9142277 - AluSg/x SINE Alu 0 310 122 194 0 39 0 chr9 108720350 108720376 -9142251 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2163 57 4 0 chr9 108720376 108720657 -9141970 - AluY SINE Alu -29 282 1 198 255 142 57 chr9 108720954 108721060 -9141567 - MIR3 SINE MIR -45 163 49 204 157 0 78 chr9 108721495 108721546 -9141081 - MIR SINE MIR -55 153 107 219 281 18 0 chr9 108722519 108722576 -9140051 - L2 LINE L2 -210 3062 3005 840 149 0 8 chr9 108722679 108722813 -9139814 - FLAM_C SINE Alu 0 133 1 2225 101 0 0 chr9 108722816 108723112 -9139515 - AluSx SINE Alu -16 296 1 198 233 100 0 chr9 108723240 108723300 -9139327 - MIR SINE MIR -103 159 94 453 328 39 0 chr9 108723785 108723965 -9138662 + MIR SINE MIR 57 243 -19 2312 94 0 0 chr9 108724014 108724323 -9138304 - AluSg SINE Alu -1 309 1 484 75 0 0 chr9 108724362 108724429 -9138198 - AluY SINE Alu -6 306 240 1127 71 0 0 chr9 108724429 108724569 -9138058 - AluY SINE Alu -138 173 34 1799 181 176 34 chr9 108724572 108725015 -9137612 - MLT2B3 LTR ERVL -46 508 3 757 207 119 5 chr9 108725022 108725215 -9137412 - L1MCa LINE L1 -6117 309 95 2142 102 10 0 chr9 108725222 108725517 -9137110 - AluSx SINE Alu -14 298 1 578 215 39 0 chr9 108725517 108725647 -9136980 - Tigger1 DNA MER2_type -2106 312 178 294 239 13 42 chr9 108728577 108728678 -9133949 + MER5A DNA MER1_type 6 114 -75 1074 202 16 82 chr9 108729480 108729554 -9133073 - LTR32 LTR ERVL 0 471 394 1793 160 10 0 chr9 108729554 108729842 -9132785 + AluJo SINE Alu 1 291 -21 1074 202 16 82 chr9 108729842 108730024 -9132603 - LTR32 LTR ERVL -77 394 232 702 156 23 8 chr9 108731236 108731364 -9131263 - FLAM_C SINE Alu -12 131 2 2185 100 10 48 chr9 108733063 108733372 -9129255 + AluSx SINE Alu 1 297 -15 386 248 116 0 chr9 108733518 108733639 -9128988 - MIR3 SINE MIR -12 196 62 252 274 23 28 chr9 108733715 108733813 -9128814 + MIR3 SINE MIR 84 159 -49 568 207 136 35 chr9 108734090 108734288 -9128339 + MIR SINE MIR 21 238 -24 726 218 14 0 chr9 108734311 108734458 -9128169 - Tigger7 DNA MER2_type 0 2587 2439 2549 38 7 3 chr9 108734477 108734770 -9127857 - AluY SINE Alu -17 294 1 285 285 190 5 chr9 108734905 108735105 -9127522 - L2 LINE L2 -53 3219 2983 28 48 0 0 chr9 108736179 108736221 -9126406 + AT_rich Low_complexity Low_complexity 1 42 0 2429 108 11 8 chr9 108737655 108738017 -9124610 + THE1C LTR MaLR 13 375 0 617 221 15 0 chr9 108738633 108738764 -9123863 - AluJo SINE Alu -178 134 2 275 290 14 0 chr9 108738830 108738899 -9123728 - MIR SINE MIR -71 191 122 2215 95 0 39 chr9 108739285 108739591 -9123036 - AluSg SINE Alu -16 294 1 277 297 49 9 chr9 108739679 108739808 -9122819 + MIR SINE MIR 22 156 -64 872 146 0 0 chr9 108739815 108739945 -9122682 + FLAM_C SINE Alu 1 130 -3 180 0 0 0 chr9 108740058 108740078 -9122549 + (GGGA)n Simple_repeat Simple_repeat 2 21 0 2508 75 0 13 chr9 108740545 108740852 -9121775 + AluY SINE Alu 1 303 -8 316 161 0 0 chr9 108740867 108740929 -9121698 - L1MB2 LINE L1 -7 6164 6103 * 420 198 106 17 chr9 108740905 108741051 -9121576 - L1MB2 LINE L1 -74 6094 5932 192 194 0 0 chr9 108741862 108741898 -9120729 + MIR SINE MIR 81 116 -92 267 328 112 0 chr9 108742078 108742212 -9120415 + MIR SINE MIR 35 183 -79 797 196 131 106 chr9 108742236 108742361 -9120266 - AluJo SINE Alu -19 283 163 2009 122 10 7 chr9 108742361 108742649 -9119978 - AluSc SINE Alu -20 289 1 2169 122 0 0 chr9 108742651 108742939 -9119688 - AluSg SINE Alu -22 288 1 797 196 131 106 chr9 108742939 108743085 -9119542 - AluJo SINE Alu -139 163 2 2173 130 10 0 chr9 108743105 108743405 -9119222 - AluSx SINE Alu -9 303 1 1521 198 53 6 chr9 108743908 108744267 -9118360 - L1MB3 LINE L1 0 6183 5808 257 301 43 11 chr9 108744283 108744376 -9118251 - MIR SINE MIR -119 143 48 429 232 89 0 chr9 108745076 108745188 -9117439 + MIR SINE MIR 61 182 -80 983 124 0 0 chr9 108745477 108745614 -9117013 + AluSg/x SINE Alu 167 303 -9 1130 146 6 0 chr9 108745731 108745895 -9116732 + FRAM SINE Alu 1 159 -17 314 275 66 0 chr9 108746195 108746286 -9116341 + MIR3 SINE MIR 60 156 -52 521 237 25 29 chr9 108746293 108746480 -9116147 - MIR SINE MIR 0 262 78 1566 167 18 14 chr9 108746881 108747163 -9115464 - AluSx SINE Alu -29 283 1 187 328 0 16 chr9 108747164 108747228 -9115399 - MER5B DNA MER1_type -115 63 1 397 256 40 0 chr9 108747551 108747676 -9114951 + L3 LINE CR1 1401 1530 -47 2583 73 0 0 chr9 108747738 108748040 -9114587 + AluSx SINE Alu 1 302 -10 289 227 159 31 chr9 108748053 108748153 -9114474 + Tigger6 DNA MER2_type 1127 1213 -384 1536 196 8 4 chr9 108748153 108748418 -9114209 + AluJb SINE Alu 2 267 -45 289 227 159 31 chr9 108748418 108748480 -9114147 + Tigger6 DNA MER2_type 1213 1310 -287 2413 80 13 0 chr9 108748721 108749021 -9113606 + AluSp SINE Alu 1 304 -9 22 0 0 0 chr9 108751233 108751255 -9111372 + GC_rich Low_complexity Low_complexity 1 22 0 211 273 30 0 chr9 108751921 108751987 -9110640 - MIR SINE MIR -21 241 174 2702 61 0 0 chr9 108752225 108752536 -9110091 - AluY SINE Alu 0 311 1 1408 73 6 6 chr9 108752849 108753026 -9109601 - AluSp SINE Alu -18 295 119 228 100 0 0 chr9 108753185 108753215 -9109412 + Alu SINE Alu 89 118 -181 1544 135 4 20 chr9 108753217 108753461 -9109166 + AluSg/x SINE Alu 71 310 0 2266 114 0 0 chr9 108753471 108753768 -9108859 + AluSx SINE Alu 1 297 -15 369 308 0 0 chr9 108754215 108754332 -9108295 - MIR SINE MIR -2 260 144 329 221 63 16 chr9 108754602 108754729 -9107898 - L1MC5 LINE L1 -165 7796 7664 662 194 15 22 chr9 108754729 108754863 -9107764 - MIR SINE MIR -103 159 27 2264 118 3 0 chr9 108754863 108755160 -9107467 - AluSx SINE Alu -14 298 1 303 204 216 0 chr9 108755165 108755253 -9107374 - L1MD3 LINE L1 -206 7789 7683 1281 35 0 0 chr9 108755253 108755396 -9107231 - AluY SINE Alu -20 291 149 2464 77 3 0 chr9 108755414 108755714 -9106913 - AluSx SINE Alu -11 301 1 2332 114 0 0 chr9 108756128 108756434 -9106193 + AluSx SINE Alu 2 307 -5 326 154 0 15 chr9 108756455 108756520 -9106107 + GA-rich Low_complexity Low_complexity 1 64 0 709 221 47 42 chr9 108757462 108757652 -9104975 - L1MD3 LINE L1 -1162 6833 6643 334 305 61 24 chr9 108757656 108757820 -9104807 + MIR SINE MIR 47 216 -46 414 39 0 0 chr9 108757916 108757968 -9104659 + (TG)n Simple_repeat Simple_repeat 2 53 0 30 0 0 0 chr9 108758004 108758034 -9104593 + AT_rich Low_complexity Low_complexity 1 30 0 1040 166 17 17 chr9 108758914 108759089 -9103538 + AluJo SINE Alu 121 295 -17 2353 82 10 0 chr9 108759204 108759496 -9103131 - AluY SINE Alu -16 295 1 2125 118 7 3 chr9 108759496 108759792 -9102835 - AluSx SINE Alu -14 298 2 225 289 22 22 chr9 108759864 108759954 -9102673 - MIR3 SINE MIR -26 182 93 183 200 40 40 chr9 108760036 108760086 -9102541 + L2 LINE L2 3223 3272 0 * 326 328 30 61 chr9 108760084 108760215 -9102412 + L2 LINE L2 3134 3260 -12 238 366 38 30 chr9 108760203 108760334 -9102293 - L2 LINE L2 -25 3247 3116 * 345 279 9 45 chr9 108760336 108760447 -9102180 + L1M LINE L1 5255 5361 -2447 1997 121 4 0 chr9 108760450 108760714 -9101913 + AluSq SINE Alu 2 266 -47 2429 70 3 3 chr9 108760848 108761148 -9101479 - AluY SINE Alu -11 300 1 289 259 27 89 chr9 108761170 108761257 -9101370 - L2 LINE L2 -6 3266 3186 1895 142 43 0 chr9 108761257 108761539 -9101088 + AluSq SINE Alu 1 294 -19 289 259 27 89 chr9 108761539 108761563 -9101064 - L2 LINE L2 -86 3186 3162 241 301 49 49 chr9 108761581 108761764 -9100863 - MIR SINE MIR 0 262 80 917 195 7 0 chr9 108761817 108761971 -9100656 + FRAM SINE Alu 1 152 -24 2544 31 21 10 chr9 108762026 108762317 -9100310 + AluY SINE Alu 16 309 -2 249 232 0 0 chr9 108762348 108762404 -9100223 + AluJ/monomer SINE Alu 245 300 -2 2035 145 7 3 chr9 108762435 108762738 -9099889 - AluSx SINE Alu -8 304 1 358 261 0 0 chr9 108762799 108762887 -9099740 - AluJb SINE Alu -168 134 47 585 266 65 32 chr9 108763083 108763331 -9099296 - MIR SINE MIR -1 261 6 2448 80 0 10 chr9 108763348 108763661 -9098966 - AluSg SINE Alu 0 310 1 183 192 39 39 chr9 108763691 108763743 -9098884 - MIR SINE MIR -60 148 97 27 29 0 0 chr9 108764836 108764870 -9097757 + AT_rich Low_complexity Low_complexity 1 34 0 324 276 61 0 chr9 108765527 108765625 -9097002 - MIR SINE MIR -78 184 81 2190 89 7 14 chr9 108765625 108765940 -9096687 - AluSp SINE Alu 0 313 1 2101 129 10 0 chr9 108765957 108766251 -9096376 - AluSp SINE Alu -16 297 1 2390 87 0 3 chr9 108766265 108766564 -9096063 - AluY SINE Alu -12 299 2 490 100 0 56 chr9 108766594 108766684 -9095943 + AluSg/x SINE Alu 206 290 -22 468 97 0 0 chr9 108766710 108766772 -9095855 - AluJ/FLAM SINE Alu -238 74 13 349 82 0 0 chr9 108766880 108766941 -9095686 - L1MB3 LINE L1 0 6183 6123 1929 196 46 108 chr9 108766943 108767299 -9095328 - L1MB3 LINE L1 -214 5960 5584 1548 80 0 0 chr9 108767299 108767486 -9095141 - AluSg/x SINE Alu -9 301 115 245 118 0 0 chr9 108767486 108767520 -9095107 - Alu SINE Alu -265 34 1 1929 196 46 108 chr9 108767520 108767694 -9094933 - L1MB3 LINE L1 -589 5585 5402 575 240 8 8 chr9 108767694 108767819 -9094808 - FLAM_A SINE Alu -6 127 3 1929 196 46 108 chr9 108767819 108767831 -9094796 - L1MB3 LINE L1 -772 5402 5391 2327 91 10 0 chr9 108767831 108768129 -9094498 - AluY SINE Alu -10 301 1 1929 196 46 108 chr9 108768129 108768377 -9094250 - L1MB3 LINE L1 -783 5391 5129 1805 157 7 42 chr9 108768377 108768683 -9093944 - AluJb SINE Alu -12 300 6 1929 196 46 108 chr9 108768683 108768716 -9093911 - L1MB3 LINE L1 -1045 5129 5166 2082 114 13 7 chr9 108768716 108769022 -9093605 - AluSx SINE Alu -4 308 1 1929 196 46 108 chr9 108769022 108769083 -9093544 - L1MB3 LINE L1 -1007 5167 5104 467 174 4 46 chr9 108769084 108769223 -9093404 - L1MB3 LINE L1 -2574 3572 3446 555 284 25 0 chr9 108769229 108769433 -9093194 - L1MB3 LINE L1 -2647 3499 3291 1897 155 3 3 chr9 108769478 108769768 -9092859 - AluSx SINE Alu -22 290 1 2249 100 27 0 chr9 108769807 108770108 -9092519 - AluSq SINE Alu -2 311 3 384 22 0 0 chr9 108770144 108770189 -9092438 + (TG)n Simple_repeat Simple_repeat 1 45 0 372 59 0 0 chr9 108770268 108770319 -9092308 + (TG)n Simple_repeat Simple_repeat 2 52 0 999 140 0 2 chr9 108770398 108770635 -9091992 - AluJb SINE Alu -20 292 17 433 266 28 23 chr9 108770651 108770828 -9091799 - L1MB3 LINE L1 -3308 2838 2661 287 261 26 26 chr9 108770833 108770948 -9091679 + L1MC/D LINE L1 5710 5824 -1984 307 208 28 69 chr9 108770951 108771023 -9091604 + L1MC/D LINE L1 5760 5828 -1980 1416 219 0 34 chr9 108771024 108771321 -9091306 - AluJo SINE Alu -15 297 11 1494 185 27 31 chr9 108771384 108771522 -9091105 + AluJo SINE Alu 1 138 -174 2466 85 3 0 chr9 108771522 108771828 -9090799 + AluSq SINE Alu 1 307 -6 1494 185 27 31 chr9 108771828 108771981 -9090646 + AluJo SINE Alu 138 291 -21 1082 222 92 32 chr9 108771993 108772277 -9090350 + AluJo SINE Alu 1 301 -1 625 224 63 0 chr9 108772309 108772452 -9090175 + FRAM SINE Alu 2 153 -13 312 380 8 0 chr9 108772959 108773080 -9089547 - L2 LINE L2 0 3272 3151 733 199 0 7 chr9 108773170 108773311 -9089316 - AluJb SINE Alu -171 141 2 1892 133 73 0 chr9 108773707 108773993 -9088634 - AluSc SINE Alu -2 307 1 2173 129 3 0 chr9 108773995 108774289 -9088338 - AluSx SINE Alu -17 295 1 408 317 55 25 chr9 108775121 108775323 -9087304 - MIR SINE MIR -5 257 50 2295 88 0 3 chr9 108775470 108775779 -9086848 - AluSg SINE Alu 0 308 1 2241 115 13 0 chr9 108775825 108776129 -9086498 - AluSx SINE Alu 0 312 5 3181 161 61 41 chr9 108776131 108776832 -9085795 + L1MC1 LINE L1 5618 6332 -1 2235 132 0 0 chr9 108777432 108777743 -9084884 - AluSx SINE Alu -1 311 1 330 196 196 6 chr9 108777752 108777910 -9084717 - L1ME4a LINE L1 -4 6117 5930 2141 114 4 0 chr9 108777957 108778268 -9084359 - AluSg SINE Alu 0 312 1 408 176 118 0 chr9 108778271 108778356 -9084271 - AluJo/FLAM SINE Alu -180 132 38 782 165 0 0 chr9 108778453 108778586 -9084041 - FLAM_C SINE Alu 0 133 1 500 235 104 16 chr9 108778594 108778777 -9083850 - L1MC5 LINE L1 -36 7925 7727 692 226 79 0 chr9 108778827 108778991 -9083636 - AluJb SINE Alu -6 306 130 2101 95 4 4 chr9 108779125 108779388 -9083239 - AluSx SINE Alu -20 292 30 897 122 30 0 chr9 108779406 108779537 -9083090 - FLAM_C SINE Alu -8 135 1 432 0 0 0 chr9 108780235 108780283 -9082344 + (CA)n Simple_repeat Simple_repeat 1 48 0 2388 110 0 0 chr9 108780311 108780619 -9082008 + AluSx SINE Alu 1 308 -4 2045 117 7 7 chr9 108780621 108780912 -9081715 + AluSg SINE Alu 1 291 -19 760 259 0 5 chr9 108782476 108782665 -9079962 + AluSx SINE Alu 2 189 -123 2155 120 7 3 chr9 108782796 108783097 -9079530 - AluSx SINE Alu -10 302 1 358 261 0 0 chr9 108783158 108783246 -9079381 - AluJb SINE Alu -168 134 47 552 275 60 40 chr9 108783443 108783694 -9078933 - MIR SINE MIR -1 261 6 2421 83 0 10 chr9 108783711 108784024 -9078603 - AluSg SINE Alu 0 310 1 829 176 33 13 chr9 108785522 108785675 -9076952 - FRAM SINE Alu -7 159 4 180 204 143 0 chr9 108785799 108785848 -9076779 - MIR SINE MIR -86 176 121 2279 88 10 20 chr9 108785896 108786193 -9076434 + AluSp SINE Alu 1 294 -19 1984 109 11 7 chr9 108786272 108786547 -9076080 + AluSx SINE Alu 19 294 -18 1047 130 90 6 chr9 108787747 108787924 -9074703 - AluSg/x SINE Alu -1 311 120 2066 147 0 7 chr9 108787928 108788235 -9074392 - AluSx SINE Alu -7 305 1 2322 103 3 0 chr9 108788238 108788539 -9074088 - AluSq SINE Alu -11 302 1 193 184 0 82 chr9 108789278 108789327 -9073300 - L2 LINE L2 -18 3295 3251 408 283 111 45 chr9 108789396 108789640 -9072987 + MER112 DNA MER1_type 1 260 0 300 297 127 12 chr9 108789640 108789805 -9072822 + MIR SINE MIR 3 186 -76 2255 99 0 33 chr9 108789870 108790172 -9072455 + AluSq SINE Alu 1 292 -21 207 0 0 0 chr9 108791188 108791211 -9071416 + (GA)n Simple_repeat Simple_repeat 1 23 0 * 429 20 0 0 chr9 108791210 108791260 -9071367 + (TG)n Simple_repeat Simple_repeat 2 51 0 582 221 64 0 chr9 108792513 108792653 -9069974 + MIR SINE MIR 6 154 -108 852 91 126 21 chr9 108792653 108792796 -9069831 - MER46A DNA MER2_type 0 236 79 1311 96 17 0 chr9 108792843 108793021 -9069606 - AluSg/x SINE Alu -4 308 128 181 77 77 0 chr9 108793021 108793060 -9069567 + (GTTTG)n Simple_repeat Simple_repeat 4 45 0 1402 143 30 104 chr9 108793183 108793518 -9069109 - AluYb8 SINE Alu -4 314 5 1662 171 0 33 chr9 108793579 108793884 -9068743 + AluJb SINE Alu 1 295 -17 1125 83 0 0 chr9 108793888 108794021 -9068606 + AluSg SINE Alu 1 133 -177 2122 131 10 3 chr9 108794021 108794327 -9068300 + AluSx SINE Alu 1 308 -4 675 126 0 55 chr9 108794801 108794928 -9067699 + FLAM_C SINE Alu 19 138 -5 1894 115 3 51 chr9 108794928 108795065 -9067562 + AluSg1 SINE Alu 1 143 -166 1897 143 3 3 chr9 108795065 108795351 -9067276 + AluY SINE Alu 1 286 -25 1894 115 3 51 chr9 108795351 108795526 -9067101 + AluSg1 SINE Alu 143 298 -11 259 118 0 0 chr9 108795654 108795705 -9066922 - Alu SINE Alu 0 302 252 2030 134 17 0 chr9 108795751 108796042 -9066585 + AluSg SINE Alu 3 298 -12 1895 128 42 7 chr9 108796051 108796339 -9066288 + AluSx SINE Alu 1 298 -14 201 74 0 0 chr9 108796391 108796418 -9066209 + (T)n Simple_repeat Simple_repeat 1 27 0 449 88 0 0 chr9 108796523 108796591 -9066036 + AluSp/q SINE Alu 242 309 -4 2123 158 0 0 chr9 108796844 108797154 -9065473 - AluSx SINE Alu -1 311 2 546 315 158 25 chr9 108797354 108797792 -9064835 + L2 LINE L2 2818 3313 0 2062 81 42 71 chr9 108797859 108798169 -9064458 - AluSp SINE Alu -12 301 1 1808 125 75 20 chr9 108798178 108798473 -9064154 - AluSx SINE Alu -1 311 1 273 349 38 8 chr9 108798487 108798619 -9064008 - L2 LINE L2 -1 3271 3136 446 251 66 62 chr9 108798935 108799000 -9063627 - MIR SINE MIR -48 214 151 2178 112 0 3 chr9 108799000 108799286 -9063341 - AluSx SINE Alu -7 305 21 446 251 66 62 chr9 108799286 108799431 -9063196 - MIR SINE MIR -111 151 3 2406 106 0 3 chr9 108800050 108800361 -9062266 + AluSx SINE Alu 1 310 -2 710 212 31 124 chr9 108800487 108800676 -9061951 + LTR37A LTR ERV1 50 255 -171 1636 177 3 35 chr9 108800676 108800992 -9061635 + AluJo SINE Alu 1 306 -6 710 212 31 124 chr9 108800992 108801024 -9061603 + LTR37A LTR ERV1 255 288 -138 1987 163 0 0 chr9 108801024 108801319 -9061308 + AluSx SINE Alu 1 295 -17 710 212 31 124 chr9 108801319 108801450 -9061177 + LTR37A LTR ERV1 288 370 -56 1754 146 3 78 chr9 108801478 108801629 -9060998 + AluJb SINE Alu 3 119 -193 2030 150 0 7 chr9 108801629 108801929 -9060698 + AluJb SINE Alu 1 298 -14 1754 146 3 78 chr9 108801929 108802098 -9060529 + AluJb SINE Alu 119 299 -13 847 88 0 0 chr9 108802099 108802201 -9060426 + AluSp SINE Alu 3 104 -209 544 98 33 0 chr9 108802201 108802293 -9060334 + AluSp/q SINE Alu 219 313 0 2622 54 0 0 chr9 108802301 108802599 -9060028 + AluY SINE Alu 1 298 -13 338 250 23 0 chr9 108802600 108802688 -9059939 + MIR SINE MIR 115 204 -58 337 170 0 0 chr9 108802688 108802741 -9059886 - Tigger1 DNA MER2_type 0 2418 2366 2140 116 3 3 chr9 108802746 108803040 -9059587 - AluSx SINE Alu -14 298 5 277 246 18 0 chr9 108803045 108803102 -9059525 - MIR SINE MIR -194 68 11 2379 60 43 10 chr9 108803147 108803447 -9059180 - AluY SINE Alu -1 310 1 1851 143 28 7 chr9 108803460 108803746 -9058881 - AluSx SINE Alu -20 292 1 260 327 213 8 chr9 108803875 108804251 -9058376 - L1MC/D LINE L1 -1977 5831 5379 295 275 77 0 chr9 108804966 108805057 -9057570 + MIR SINE MIR 117 214 -48 2413 97 0 0 chr9 108807399 108807699 -9054928 - AluSx SINE Alu -12 300 1 191 35 0 35 chr9 108808072 108808101 -9054526 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 756 322 95 18 chr9 108808157 108808662 -9053965 - L2 LINE L2 -52 3261 2714 1207 196 0 23 chr9 108808740 108808959 -9053668 - AluJb SINE Alu -12 300 87 2488 77 0 0 chr9 108808969 108809267 -9053360 - AluSc SINE Alu -9 300 3 1674 143 27 36 chr9 108809277 108809439 -9053188 - L1MD3 LINE L1 -298 7697 7535 2384 91 10 0 chr9 108809439 108809736 -9052891 - AluSq SINE Alu -13 300 1 1674 143 27 36 chr9 108809736 108809908 -9052719 - L1MD3 LINE L1 -460 7535 7366 858 146 0 15 chr9 108809908 108810045 -9052582 - AluJo SINE Alu -165 147 13 378 214 185 6 chr9 108810056 108810234 -9052393 - L1MD3 LINE L1 -926 7069 6860 320 253 0 55 chr9 108810264 108810355 -9052272 - L1MD3 LINE L1 -1106 6889 6804 248 294 13 0 chr9 108810899 108810994 -9051633 + MIR SINE MIR 53 148 -62 2379 82 0 10 chr9 108811235 108811539 -9051088 - AluY SINE Alu -9 302 2 183 42 0 0 chr9 108811539 108811563 -9051064 + (TTTC)n Simple_repeat Simple_repeat 2 25 0 2183 126 0 0 chr9 108811563 108811848 -9050779 - AluSq SINE Alu -28 285 1 2163 95 0 56 chr9 108811863 108812072 -9050555 - AluSg SINE Alu 0 327 141 2371 104 3 0 chr9 108812072 108812379 -9050248 - AluSp SINE Alu -4 309 2 2163 95 0 56 chr9 108812379 108812511 -9050116 - AluSg SINE Alu -186 141 3 2326 73 0 14 chr9 108812534 108812862 -9049765 - AluY SINE Alu 0 326 3 2011 118 56 0 chr9 108812864 108813152 -9049475 - AluSx SINE Alu -8 304 1 1856 143 12 50 chr9 108813815 108814137 -9048490 + AluSx SINE Alu 1 310 -2 2318 122 3 0 chr9 108814200 108814512 -9048115 + AluSp SINE Alu 1 313 0 293 242 0 102 chr9 108814831 108814959 -9047668 - FLAM_C SINE Alu -5 128 14 2308 96 0 10 chr9 108817383 108817686 -9044941 - AluSx SINE Alu -12 300 1 769 323 93 19 chr9 108818147 108818654 -9043973 - L2 LINE L2 -52 3261 2714 1207 196 0 23 chr9 108818734 108818953 -9043674 - AluJb SINE Alu -12 300 87 2436 86 0 3 chr9 108818963 108819265 -9043362 - AluSc SINE Alu -8 301 1 2541 67 13 0 chr9 108820104 108820403 -9042224 - AluSx SINE Alu -9 303 1 329 233 47 0 chr9 108821103 108821189 -9041438 - L2 LINE L2 -41 3231 3142 859 152 7 0 chr9 108821563 108821708 -9040919 + AluSg/x SINE Alu 164 309 -3 2319 108 0 3 chr9 108821711 108822007 -9040620 + AluSx SINE Alu 1 295 -17 250 363 22 7 chr9 108822182 108822317 -9040310 - MIR3 SINE MIR -37 171 35 240 322 33 11 chr9 108823252 108823342 -9039285 - L1MC/D LINE L1 -2204 5604 5513 2564 57 0 19 chr9 108823372 108823688 -9038939 - AluY SINE Alu -1 310 1 516 81 14 0 chr9 108824064 108824138 -9038489 - L1PA11 LINE L1 -180 5994 5920 2471 63 0 10 chr9 108824250 108824550 -9038077 + AluY SINE Alu 2 298 -13 289 203 47 0 chr9 108824804 108824868 -9037759 - MIR3 SINE MIR -53 155 89 2386 55 3 3 chr9 108826839 108827128 -9035499 + AluY SINE Alu 1 289 -22 225 239 0 0 chr9 108827556 108827602 -9035025 + CT-rich Low_complexity Low_complexity 3 48 0 401 279 50 14 chr9 108828597 108828737 -9033890 - MIR3 SINE MIR -44 164 20 2135 120 7 3 chr9 108829772 108830056 -9032571 - AluSx SINE Alu -27 285 1 195 42 0 0 chr9 108830056 108830080 -9032547 + (TA)n Simple_repeat Simple_repeat 2 25 0 1932 106 42 0 chr9 108830080 108830345 -9032282 - AluSq SINE Alu -14 299 24 1639 183 7 14 chr9 108830356 108830645 -9031982 - AluJo SINE Alu -25 287 1 368 232 113 45 chr9 108831407 108831584 -9031043 + MER5A DNA MER1_type 1 189 0 454 59 0 10 chr9 108831787 108831992 -9030635 + AluSc SINE Alu 1 299 -12 1884 133 44 0 chr9 108831994 108832287 -9030340 + AluSx SINE Alu 1 306 -6 848 153 7 0 chr9 108833112 108833249 -9029378 + AluSg/x SINE Alu 162 299 -11 748 113 35 0 chr9 108833249 108833364 -9029263 + L1PA11 LINE L1 6052 6170 -4 310 221 0 52 chr9 108833368 108833425 -9029202 - L1MC5 LINE L1 -261 7700 7645 2084 108 0 11 chr9 108833425 108833734 -9028893 + AluSx SINE Alu 1 306 0 310 221 0 52 chr9 108833734 108833752 -9028875 - L1MC5 LINE L1 -316 7645 7628 1438 182 82 7 chr9 108833881 108834161 -9028466 - AluJo SINE Alu -7 305 5 834 237 142 15 chr9 108834177 108834515 -9028112 - L1MB8 LINE L1 -1 6177 5797 2049 120 10 13 chr9 108834527 108834702 -9027925 - AluSg SINE Alu -2 308 133 2368 69 7 0 chr9 108834702 108835007 -9027620 - AluSp SINE Alu -5 308 2 2049 120 10 13 chr9 108835007 108835140 -9027487 - AluSg SINE Alu -177 133 1 265 347 48 8 chr9 108835212 108835336 -9027291 + L2 LINE L2 3185 3313 0 1781 177 41 39 chr9 108835383 108835745 -9026882 - THE1B LTR MaLR 0 364 2 215 346 37 0 chr9 108836079 108836160 -9026467 + MIR SINE MIR 108 191 -71 240 224 30 0 chr9 108836432 108836499 -9026128 + L1ME3A LINE L1 5687 5755 -429 982 113 0 0 chr9 108836512 108836645 -9025982 + FLAM_C SINE Alu 1 133 -10 496 278 11 17 chr9 108836648 108836828 -9025799 + L1ME3A LINE L1 5759 5937 -233 1755 141 0 32 chr9 108836836 108837148 -9025479 + AluSc SINE Alu 4 305 -4 183 330 55 0 chr9 108837357 108837448 -9025179 + MIR SINE MIR 60 155 -107 302 333 102 38 chr9 108838193 108838379 -9024248 + MIR SINE MIR 29 226 -36 1349 63 0 11 chr9 108839995 108840169 -9022458 - AluY SINE Alu -7 304 133 1940 90 3 47 chr9 108840169 108840491 -9022136 - AluY SINE Alu -3 308 1 2138 77 49 0 chr9 108840491 108840776 -9021851 - AluY SINE Alu -12 299 1 312 336 48 0 chr9 108840916 108841041 -9021586 + MIR SINE MIR 17 147 -115 233 233 33 17 chr9 108841430 108841490 -9021137 + L1ME3A LINE L1 6018 6078 -92 1487 134 0 45 chr9 108841520 108841766 -9020861 + AluSx SINE Alu 1 235 -77 2083 116 7 7 chr9 108841868 108842170 -9020457 - AluSx SINE Alu -8 304 3 1931 130 7 7 chr9 108842174 108842473 -9020154 - AluSx SINE Alu -13 299 1 2003 118 7 0 chr9 108842516 108842803 -9019824 - AluSx SINE Alu -19 293 5 186 43 0 0 chr9 108842818 108842841 -9019786 + (TA)n Simple_repeat Simple_repeat 1 23 0 1876 133 3 7 chr9 108842841 108843126 -9019501 - AluJb SINE Alu -28 284 1 351 291 12 0 chr9 108843892 108843978 -9018649 - L2 LINE L2 -2 3270 3184 232 325 12 12 chr9 108845181 108845261 -9017366 + MIR SINE MIR 157 236 -26 1954 113 3 14 chr9 108845373 108845685 -9016942 - AluSg SINE Alu 0 309 1 1709 103 0 8 chr9 108845686 108845928 -9016699 - AluSg SINE Alu -14 296 57 1778 107 0 16 chr9 108845981 108846234 -9016393 - AluSq SINE Alu -6 307 59 1298 104 0 41 chr9 108846905 108847116 -9015511 + AluSg/x SINE Alu 99 302 -10 2119 84 0 43 chr9 108847116 108847438 -9015189 + AluSc SINE Alu 1 308 -1 265 281 178 22 chr9 108847484 108847627 -9015000 + MIR SINE MIR 7 167 -65 2272 47 7 0 chr9 108847627 108847926 -9014701 - AluY SINE Alu 0 301 1 240 243 0 0 chr9 108848081 108848155 -9014472 + GA-rich Low_complexity Low_complexity 3 76 0 466 283 73 26 chr9 108848951 108849142 -9013485 + MIR SINE MIR 60 259 -3 281 280 85 25 chr9 108850681 108850799 -9011828 + MIR SINE MIR 28 152 -110 191 298 0 53 chr9 108853615 108853672 -9008955 - L2 LINE L2 -4 3309 3256 219 167 24 0 chr9 108854216 108854258 -9008369 + MIR SINE MIR 79 121 -141 199 213 0 21 chr9 108857794 108857841 -9004786 - MIR SINE MIR -73 135 90 380 322 14 20 chr9 108858200 108858346 -9004281 + L1MC4a LINE L1 5691 5835 -1973 * 440 239 21 122 chr9 108858331 108858412 -9004215 + L1MB7 LINE L1 3 56 -6803 852 167 0 0 chr9 108858412 108858544 -9004083 + AluJo SINE Alu 2 133 -169 440 239 21 122 chr9 108858544 108858650 -9003977 + L1MB7 LINE L1 56 171 -6688 764 209 0 22 chr9 108858651 108858790 -9003837 + AluJo SINE Alu 1 136 -176 440 242 8 0 chr9 108858791 108858911 -9003716 + L1MB7 LINE L1 1778 1898 -4957 835 162 7 27 chr9 108858916 108859064 -9003563 + AluJo SINE Alu 137 281 -31 186 43 0 0 chr9 108859066 108859089 -9003538 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 382 252 52 0 chr9 108859099 108859234 -9003393 + L1MB7 LINE L1 2066 2207 -4752 697 207 50 90 chr9 108859335 108859519 -9003108 + L1MB7 LINE L1 3410 3600 -3377 1834 109 3 87 chr9 108859519 108859657 -9002970 + AluSx SINE Alu 1 98 -214 2296 86 7 0 chr9 108859657 108859959 -9002668 + AluY SINE Alu 2 305 -6 1834 109 3 87 chr9 108859959 108860142 -9002485 + AluSx SINE Alu 98 295 -17 697 207 50 90 chr9 108860142 108860327 -9002300 + L1MB7 LINE L1 3600 6411 -566 2294 84 0 3 chr9 108860334 108860631 -9001996 + AluSg SINE Alu 1 296 -14 2048 110 3 10 chr9 108860651 108860950 -9001677 + AluY SINE Alu 1 297 -14 705 236 83 70 chr9 108860950 108861148 -9001479 + L1MB7 LINE L1 6678 6872 -123 1800 157 3 10 chr9 108861148 108861461 -9001166 + AluJo SINE Alu 1 311 -1 2020 121 3 13 chr9 108861468 108861774 -9000853 + AluSx SINE Alu 1 303 -9 705 236 83 70 chr9 108861774 108861880 -9000747 + L1MB7 LINE L1 6877 6994 -1 908 242 0 7 chr9 108861992 108862277 -9000350 + AluSx SINE Alu 27 309 -3 1275 211 0 10 chr9 108862331 108862629 -8999998 + AluSx SINE Alu 1 295 -17 1954 118 0 10 chr9 108862631 108862935 -8999692 + AluY SINE Alu 1 301 -10 2219 109 0 3 chr9 108863726 108864028 -8998599 + AluSx SINE Alu 1 301 -11 219 222 0 37 chr9 108864628 108864682 -8997945 + MIR3 SINE MIR 108 159 -49 572 267 26 41 chr9 108864931 108865128 -8997499 + MIR SINE MIR 6 202 -58 234 269 51 13 chr9 108865985 108866063 -8996564 - MIR SINE MIR -80 182 102 1458 164 45 45 chr9 108866204 108866344 -8996283 + AluJo SINE Alu 2 141 -171 2090 88 14 7 chr9 108866344 108866640 -8995987 + AluY SINE Alu 1 298 -13 1458 164 45 45 chr9 108866640 108866791 -8995836 + AluJo SINE Alu 140 293 -19 2153 61 0 0 chr9 108866792 108867053 -8995574 + AluY SINE Alu 36 296 -15 1994 97 42 7 chr9 108867062 108867351 -8995276 + AluSx SINE Alu 1 299 -13 2043 140 0 13 chr9 108867351 108867665 -8994962 + AluSx SINE Alu 1 310 -2 300 83 0 0 chr9 108867679 108867727 -8994900 + (CAGG)n Simple_repeat Simple_repeat 2 49 0 201 234 0 0 chr9 108867986 108868050 -8994577 + (CTA)n Simple_repeat Simple_repeat 2 65 0 218 214 0 0 chr9 108869101 108869143 -8993484 + (CAA)n Simple_repeat Simple_repeat 1 42 0 249 202 55 0 chr9 108869222 108869287 -8993340 - MIR SINE MIR -68 140 84 252 293 28 38 chr9 108869370 108869476 -8993151 - MIR SINE MIR -77 185 81 182 227 23 0 chr9 108869743 108869787 -8992840 - MIR SINE MIR -55 153 109 289 217 24 54 chr9 108870270 108870436 -8992191 + (CCCG)n Simple_repeat Simple_repeat 1 161 0 650 127 70 3 chr9 108870901 108871041 -8991586 - L1MA7 LINE L1 -29 6268 6102 991 123 0 31 chr9 108871041 108871204 -8991423 - AluSg/x SINE Alu -15 295 138 2134 117 0 3 chr9 108871789 108872088 -8990539 - AluSc SINE Alu -9 300 3 2152 116 0 0 chr9 108872090 108872393 -8990234 - AluSx SINE Alu -9 303 1 201 303 56 34 chr9 108872462 108872507 -8990120 - MIR SINE MIR -70 192 149 2066 114 0 25 chr9 108872507 108872824 -8989803 - AluSg SINE Alu -1 309 1 201 303 56 34 chr9 108872824 108872867 -8989760 - MIR SINE MIR -113 149 102 215 300 38 25 chr9 108874721 108874801 -8987826 + MIR SINE MIR 64 144 -64 346 304 10 10 chr9 108875502 108875604 -8987023 + MIR SINE MIR 48 149 -113 2306 90 3 0 chr9 108875655 108875956 -8986671 - AluSx SINE Alu 0 312 11 408 20 0 0 chr9 108876044 108876093 -8986534 + (TG)n Simple_repeat Simple_repeat 2 50 0 2109 113 0 7 chr9 108876107 108876417 -8986210 - AluY SINE Alu -1 310 3 1176 122 0 0 chr9 108876439 108876603 -8986024 - AluSg/x SINE Alu -18 292 129 288 0 0 0 chr9 108876603 108876635 -8985992 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1964 113 0 11 chr9 108876635 108876919 -8985708 - AluSq SINE Alu -31 282 2 27 0 0 0 chr9 108877756 108877783 -8984844 + AT_rich Low_complexity Low_complexity 1 27 0 2198 78 0 45 chr9 108877788 108877933 -8984694 + AluSx SINE Alu 1 126 -186 2057 122 10 7 chr9 108877933 108878227 -8984400 + AluSx SINE Alu 1 295 -17 2198 78 0 45 chr9 108878227 108878390 -8984237 + AluSx SINE Alu 126 295 -17 734 208 0 8 chr9 108878391 108878521 -8984106 - FLAM_C SINE Alu -4 129 1 267 279 172 8 chr9 108878752 108878874 -8983753 + MIR3 SINE MIR 30 171 -37 285 331 33 13 chr9 108879414 108879565 -8983062 + MIR SINE MIR 12 165 -97 2376 61 3 0 chr9 108879802 108880096 -8982531 + AluY SINE Alu 1 295 -16 196 267 33 17 chr9 108880509 108880569 -8982058 + L2 LINE L2 3204 3264 -8 2240 90 0 31 chr9 108880662 108880985 -8981642 - AluSq SINE Alu 0 313 1 743 177 0 54 chr9 108881022 108881152 -8981475 + AluJo SINE Alu 1 123 -179 421 121 0 0 chr9 108881153 108881211 -8981416 - Alu SINE Alu -21 291 234 1050 147 55 0 chr9 108881211 108881374 -8981253 + AluJo SINE Alu 132 303 -9 2091 190 50 39 chr9 108881374 108881496 -8981131 - L1MB8 LINE L1 -38 6140 6021 1774 169 0 22 chr9 108881496 108881809 -8980818 + AluJo SINE Alu 7 312 0 2091 190 50 39 chr9 108881809 108882228 -8980399 - L1MB8 LINE L1 -157 6021 5593 524 297 0 6 chr9 108882223 108882388 -8980239 - AluSc SINE Alu -22 287 124 * 2154 113 3 3 chr9 108882388 108882699 -8979928 - AluSx SINE Alu -1 311 1 811 165 39 6 chr9 108882700 108882882 -8979745 - Tigger2 DNA MER2_type -2477 241 54 2322 74 3 0 chr9 108882890 108883186 -8979441 + AluY SINE Alu 1 297 -14 947 120 8 0 chr9 108883189 108883322 -8979305 + AluJb SINE Alu 1 134 -178 1952 123 39 0 chr9 108883475 108883760 -8978867 + AluSq SINE Alu 1 296 -17 241 276 152 9 chr9 108884956 108885061 -8977566 + MIR SINE MIR 56 175 -87 241 283 101 10 chr9 108886624 108886723 -8975904 + L2 LINE L2 3180 3287 -26 262 325 18 35 chr9 108887219 108887280 -8975347 - MIR SINE MIR -61 147 89 365 315 146 9 chr9 108887280 108887493 -8975134 + MIR SINE MIR 2 243 -19 201 311 22 11 chr9 108887527 108887617 -8975010 + L2 LINE L2 3142 3232 -40 2340 89 3 0 chr9 108887729 108888031 -8974596 + AluSx SINE Alu 1 303 -9 2343 95 0 0 chr9 108888369 108888674 -8973953 + AluSx SINE Alu 1 305 -7 198 103 0 0 chr9 108888742 108888771 -8973856 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 223 329 14 0 chr9 108888828 108888901 -8973726 + L2 LINE L2 3238 3311 -2 1363 181 12 89 chr9 108889744 108890082 -8972545 - AluJb SINE Alu 0 312 1 2109 85 68 0 chr9 108890085 108890366 -8972261 - AluSx SINE Alu -12 300 1 2018 133 0 29 chr9 108890369 108890678 -8971949 - AluSx SINE Alu -12 300 1 243 297 125 39 chr9 108891042 108891170 -8971457 - MIR SINE MIR 0 262 124 201 322 168 0 chr9 108891842 108891985 -8970642 - MIR SINE MIR -81 181 15 4022 83 14 25 chr9 108892223 108892777 -8969850 + LTR14 LTR ERVK 1 548 0 192 325 78 0 chr9 108893719 108893796 -8968831 + MIR3 SINE MIR 101 183 -25 366 268 31 10 chr9 108894936 108895033 -8967594 + MIR SINE MIR 84 182 -80 2363 77 0 0 chr9 108895548 108895846 -8966781 - AluY SINE Alu -13 298 1 2429 43 0 17 chr9 108895846 108896146 -8966481 - AluY SINE Alu -13 298 2 1914 141 7 3 chr9 108896274 108896564 -8966063 - AluSx SINE Alu -21 291 1 239 197 14 56 chr9 108897213 108897284 -8965343 + MIR SINE MIR 81 148 -60 1818 127 0 0 chr9 108897981 108898233 -8964394 - AluSx SINE Alu -17 295 44 857 200 15 5 chr9 108898233 108898428 -8964199 - L1M2 LINE L1 -714 5577 5381 379 293 28 9 chr9 108898772 108898878 -8963749 + MIR SINE MIR 84 191 -71 2289 73 0 10 chr9 108899386 108899686 -8962941 - AluY SINE Alu -14 297 1 2394 43 0 20 chr9 108899686 108899987 -8962640 - AluY SINE Alu -13 298 2 1844 148 7 7 chr9 108900115 108900406 -8962221 - AluSx SINE Alu -21 291 1 250 289 11 44 chr9 108901068 108901158 -8961469 + MIR3 SINE MIR 81 167 -41 2167 112 0 3 chr9 108901849 108902143 -8960484 - AluSg SINE Alu -17 293 1 255 247 75 21 chr9 108902148 108902241 -8960386 - L1ME3A LINE L1 0 6170 6073 295 287 93 19 chr9 108902420 108902528 -8960099 + L2 LINE L2 3137 3252 -20 228 297 0 20 chr9 108904260 108904361 -8958266 + G-rich Low_complexity Low_complexity 5 103 0 1085 106 41 18 chr9 108907199 108907369 -8955258 + AluSp SINE Alu 124 297 -16 1969 118 3 19 chr9 108907388 108907701 -8954926 + AluSx SINE Alu 1 308 -4 281 163 0 88 chr9 108907707 108907787 -8954840 + MER49 LTR ERV1 314 386 -537 207 0 0 0 chr9 108907794 108907817 -8954810 + (TAAA)n Simple_repeat Simple_repeat 4 26 0 1818 142 122 32 chr9 108907818 108907972 -8954655 + MER49 LTR ERV1 352 491 -432 1231 165 133 32 chr9 108907972 108908251 -8954376 + AluJb SINE Alu 1 307 -5 1818 142 122 32 chr9 108908251 108908497 -8954130 + MER49 LTR ERV1 491 788 -135 2027 209 145 58 chr9 108908505 108908945 -8953682 - LTR28 LTR ERV1 -1 1019 619 2111 96 0 10 chr9 108908945 108909271 -8953356 - AluY SINE Alu 0 324 2 2027 209 145 58 chr9 108909271 108909597 -8953030 - LTR28 LTR ERV1 -401 619 109 373 229 221 26 chr9 108909598 108909759 -8952868 - LTR28 LTR ERV1 -286 178 1 * 461 171 24 57 chr9 108909759 108909863 -8952764 + MER49 LTR ERV1 815 914 -9 2042 123 0 7 chr9 108909886 108910188 -8952439 - AluSg SINE Alu -10 300 1 2000 100 0 4 chr9 108910188 108910467 -8952160 - AluSq SINE Alu -34 279 1 1940 104 32 19 chr9 108910477 108910786 -8951841 - AluSp SINE Alu 0 313 1 196 189 38 19 chr9 108911007 108911060 -8951567 - MER5B DNA MER1_type -108 70 17 202 282 26 39 chr9 108911062 108911140 -8951487 - MER5A DNA MER1_type -79 110 34 2100 114 0 10 chr9 108911268 108911575 -8951052 + AluSg SINE Alu 1 304 -6 227 298 0 43 chr9 108911961 108912055 -8950572 + G-rich Low_complexity Low_complexity 5 94 0 1628 131 4 22 chr9 108912189 108912456 -8950171 + AluSx SINE Alu 36 297 -15 290 319 60 12 chr9 108912577 108912743 -8949884 - L2 LINE L2 -293 2979 2806 237 290 21 32 chr9 108912757 108912850 -8949777 + MIR3 SINE MIR 85 176 -32 268 333 37 9 chr9 108912863 108912971 -8949656 - L3 LINE CR1 -44 1533 1423 330 277 185 43 chr9 108914934 108915237 -8947390 - L3 LINE CR1 -37 1540 1195 1626 152 33 18 chr9 108915249 108915525 -8947102 + AluJo SINE Alu 12 291 -21 468 387 114 3 chr9 108915537 108915657 -8946970 + L1MEd LINE L1 700 805 -5314 1647 96 135 19 chr9 108915657 108915917 -8946710 - AluSg SINE Alu -20 290 1 468 387 114 3 chr9 108915917 108915943 -8946684 + L1MEd LINE L1 805 827 -5292 1926 122 57 0 chr9 108915943 108916222 -8946405 + AluSx SINE Alu 3 297 -15 468 387 114 3 chr9 108916222 108916371 -8946256 + L1MEd LINE L1 827 1029 -5090 2446 44 0 19 chr9 108916566 108916882 -8945745 + AluY SINE Alu 1 310 -1 252 358 98 0 chr9 108916941 108917064 -8945563 + MIR3 SINE MIR 37 171 -37 673 284 128 0 chr9 108917123 108917334 -8945293 + MIR SINE MIR 13 250 -12 519 311 7 26 chr9 108919745 108919896 -8942731 - MIR SINE MIR -83 179 32 416 324 99 6 chr9 108920338 108920520 -8942107 + MIR SINE MIR 30 228 -34 249 310 1 0 chr9 108920757 108920841 -8941786 + MIR SINE MIR 37 122 -86 342 344 150 24 chr9 108921074 108921455 -8941172 + L2 LINE L2 2843 3271 -1 219 310 23 11 chr9 108921755 108921842 -8940785 + L2 LINE L2 3168 3255 -17 216 67 0 0 chr9 108921842 108921872 -8940755 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 474 336 102 13 chr9 108922134 108922360 -8940267 - MIR SINE MIR -13 249 4 234 299 11 46 chr9 108922520 108922607 -8940020 - L3 LINE CR1 -95 1482 1399 868 313 199 5 chr9 108923384 108923806 -8938821 - L1ME4a LINE L1 -1 6120 5617 2289 96 0 0 chr9 108923807 108924109 -8938518 - AluSg SINE Alu -8 302 1 260 232 143 18 chr9 108924114 108924226 -8938401 - L1ME3A LINE L1 0 6170 6045 316 293 94 0 chr9 108924386 108924492 -8938135 + L2 LINE L2 3137 3252 -20 228 297 0 20 chr9 108926640 108926741 -8935886 + G-rich Low_complexity Low_complexity 5 103 0 21 0 0 0 chr9 108927343 108927364 -8935263 + GC_rich Low_complexity Low_complexity 1 21 0 2243 71 3 17 chr9 108929437 108929734 -8932893 + AluSp SINE Alu 1 293 -20 1116 77 46 52 chr9 108929736 108929870 -8932757 + MER30 DNA MER1_type 3 137 -93 2198 98 7 0 chr9 108929870 108930167 -8932460 - AluSg SINE Alu -11 299 1 1116 77 46 52 chr9 108930167 108930226 -8932401 + MER30 DNA MER1_type 137 195 -35 2113 85 0 49 chr9 108930266 108930573 -8932054 + AluSx SINE Alu 3 294 -18 1937 125 27 3 chr9 108930802 108931099 -8931528 - AluSq SINE Alu -8 305 2 188 250 0 0 chr9 108931313 108931357 -8931270 + L2 LINE L2 3218 3261 -11 647 112 0 0 chr9 108931775 108931864 -8930763 - AluSg/x SINE Alu -10 302 214 2378 98 3 0 chr9 108932420 108932716 -8929911 - AluSq SINE Alu -16 297 1 540 297 67 59 chr9 108932824 108933260 -8929367 - L2 LINE L2 -250 3063 2627 408 53 0 63 chr9 108933260 108933355 -8929272 + (TA)n Simple_repeat Simple_repeat 1 89 0 1984 131 27 3 chr9 108933751 108934048 -8928579 - AluSq SINE Alu -8 305 2 612 112 0 0 chr9 108934726 108934815 -8927812 - AluSg/x SINE Alu -10 299 211 2315 86 0 20 chr9 108935381 108935684 -8926943 - AluSq SINE Alu -16 297 1 718 95 0 60 chr9 108935686 108935770 -8926857 - AluSc SINE Alu -95 214 137 1567 124 12 99 chr9 108935770 108936092 -8926535 - AluSx SINE Alu -18 294 1 718 95 0 60 chr9 108936092 108936123 -8926504 - AluSc SINE Alu -172 137 106 2470 65 3 7 chr9 108936123 108936430 -8926197 - AluY SINE Alu -5 306 1 1189 207 115 4 chr9 108936442 108936712 -8925915 - AluJo SINE Alu -2 300 1 1660 142 52 24 chr9 108936810 108937099 -8925528 - AluJb SINE Alu -15 297 1 2307 105 0 13 chr9 108937151 108937457 -8925170 - AluSx SINE Alu -10 302 1 1797 136 11 18 chr9 108937459 108937745 -8924882 - AluSx SINE Alu -18 294 11 2191 108 0 29 chr9 108937807 108938113 -8924514 - AluSg SINE Alu -13 297 1 2037 133 7 7 chr9 108938142 108938436 -8924191 - AluSq SINE Alu -19 294 1 854 119 0 30 chr9 108938441 108938575 -8924052 - FLAM_C SINE Alu -2 131 2 1819 176 14 7 chr9 108938766 108939062 -8923565 - AluSx SINE Alu -14 298 1 2270 94 7 10 chr9 108939173 108939471 -8923156 - AluY SINE Alu -14 297 1 2353 90 3 7 chr9 108939749 108940049 -8922578 + AluSx SINE Alu 1 299 -13 1324 97 0 0 chr9 108940049 108940214 -8922413 + AluSq SINE Alu 134 298 -15 407 301 36 68 chr9 108941111 108941330 -8921297 - L3 LINE CR1 -229 1348 1137 859 246 24 5 chr9 108941334 108941545 -8921082 - MER20 DNA MER1_type 0 219 5 1958 164 0 0 chr9 108941894 108942187 -8920440 - AluJb SINE Alu -19 293 1 345 331 48 21 chr9 108942421 108942566 -8920061 + MIR SINE MIR 31 179 -83 2418 76 3 0 chr9 108942979 108943269 -8919358 + AluY SINE Alu 3 293 -18 56 67 0 0 chr9 108943771 108943876 -8918751 + AT_rich Low_complexity Low_complexity 1 105 0 655 296 101 50 chr9 108944023 108944506 -8918121 + MLT1J LTR MaLR 1 508 -3 284 231 46 0 chr9 108945247 108945312 -8917315 - MER66A LTR ERV1 -142 336 269 2954 251 54 13 chr9 108945802 108946769 -8915858 - L1M4 LINE L1 -1061 1944 733 2834 16 0 0 chr9 108946803 108947106 -8915521 - AluYa5 SINE Alu -8 303 1 1203 151 7 92 chr9 108947109 108947140 -8915487 - MLT1D LTR MaLR -230 275 243 2099 118 21 0 chr9 108947140 108947429 -8915198 - AluSg SINE Alu -15 295 1 1203 151 7 92 chr9 108947429 108947668 -8914959 - MLT1D LTR MaLR -262 243 28 852 299 168 19 chr9 108947698 108948122 -8914505 - L2 LINE L2 -445 2869 2383 224 270 0 68 chr9 108948461 108948535 -8914092 - MIR SINE MIR -88 174 106 604 208 6 6 chr9 108948638 108948816 -8913811 + (CA)n Simple_repeat Simple_repeat 1 178 0 271 191 12 12 chr9 108948827 108948911 -8913716 + (CA)n Simple_repeat Simple_repeat 1 84 0 580 165 0 30 chr9 108948947 108949111 -8913516 + (CA)n Simple_repeat Simple_repeat 1 159 0 348 312 32 45 chr9 108949360 108949514 -8913113 - MIR SINE MIR -13 249 98 2114 127 0 53 chr9 108949858 108950180 -8912447 - AluSx SINE Alu -7 305 1 593 146 0 10 chr9 108950308 108950411 -8912216 + FLAM_A SINE Alu 29 130 -12 352 157 24 36 chr9 108950505 108950588 -8912039 - MLT1J2 LTR MaLR -321 129 48 256 367 133 0 chr9 108950806 108950926 -8911701 + L2 LINE L2 3136 3271 -1 1984 130 3 30 chr9 108951030 108951330 -8911297 - AluJb SINE Alu -20 292 1 2214 121 3 0 chr9 108951412 108951709 -8910918 - AluSx SINE Alu -14 298 1 207 244 0 0 chr9 108951762 108951803 -8910824 - L2 LINE L2 0 3313 3273 227 289 0 12 chr9 108951956 108952039 -8910588 + HsTC2 DNA Tc2 5 86 -1812 587 14 14 0 chr9 108952086 108952158 -8910469 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 2293 92 0 0 chr9 108952158 108952439 -8910188 - AluSq SINE Alu -32 281 1 274 357 18 0 chr9 108952852 108952964 -8909663 - MIR SINE MIR -62 146 33 689 192 0 0 chr9 108953336 108953466 -8909161 + FLAM_C SINE Alu 2 131 -12 2380 107 0 0 chr9 108953475 108953785 -8908842 + AluSg SINE Alu 1 310 0 285 210 0 70 chr9 108954022 108954079 -8908548 - MIR SINE MIR -54 154 118 2184 108 3 17 chr9 108954079 108954375 -8908252 + AluSx SINE Alu 1 292 -20 285 210 0 70 chr9 108954375 108954388 -8908239 - MIR SINE MIR -90 118 106 305 270 9 52 chr9 108954584 108954699 -8907928 - MIR SINE MIR -81 127 18 2288 119 7 0 chr9 108954792 108955102 -8907525 - AluSx SINE Alu 0 312 1 2370 91 0 3 chr9 108955292 108955588 -8907039 - AluY SINE Alu -16 295 1 259 272 36 104 chr9 108955675 108955887 -8906740 - L1 LINE L1 -3110 3036 2836 1547 183 12 0 chr9 108955895 108956152 -8906475 + AluJo SINE Alu 37 296 -16 246 200 17 17 chr9 108957057 108957117 -8905510 - MER5A DNA MER1_type 0 189 130 313 307 40 0 chr9 108958013 108958114 -8904513 + MIR SINE MIR 59 163 -99 1607 136 87 0 chr9 108958121 108958386 -8904241 + AluJo SINE Alu 25 312 0 299 201 144 0 chr9 108958650 108958759 -8903868 - MIR3 SINE MIR -41 167 40 259 217 60 12 chr9 108959082 108959165 -8903462 - MLT1J LTR MaLR -178 333 247 352 253 40 33 chr9 108959278 108959428 -8903199 - MLT1J LTR MaLR -331 180 30 261 241 0 0 chr9 108959603 108959657 -8902970 + L2 LINE L2 3249 3302 -11 2238 127 7 0 chr9 108959748 108960056 -8902571 - AluSx SINE Alu -2 310 1 219 204 0 0 chr9 108960065 108960119 -8902508 + CT-rich Low_complexity Low_complexity 1 54 0 2272 110 0 10 chr9 108960119 108960418 -8902209 - AluSg SINE Alu -14 296 1 1578 160 26 51 chr9 108960419 108960609 -8902018 - AluJb SINE Alu -7 305 125 2371 107 0 3 chr9 108960609 108960917 -8901710 + AluSq SINE Alu 1 307 -6 1578 160 26 51 chr9 108960917 108961039 -8901588 - AluJb SINE Alu -187 125 1 365 258 113 26 chr9 108961349 108961500 -8901127 - MIR SINE MIR -69 193 30 305 238 238 0 chr9 108962396 108962518 -8900109 - L2 LINE L2 0 3272 3122 2290 102 7 3 chr9 108962743 108963046 -8899581 + AluSq SINE Alu 1 304 -9 476 292 158 36 chr9 108963057 108963468 -8899159 - L2 LINE L2 -4 3309 2849 416 263 44 107 chr9 108963510 108963939 -8898688 - MLT1J LTR MaLR 0 511 110 2370 106 0 3 chr9 108963946 108964258 -8898369 - AluSq SINE Alu -2 311 1 293 194 31 92 chr9 108965275 108965333 -8897294 + MIR SINE MIR 62 113 -95 2284 124 0 0 chr9 108965333 108965640 -8896987 - AluSx SINE Alu -5 307 1 293 194 31 92 chr9 108965640 108965679 -8896948 + MIR SINE MIR 113 153 -55 341 257 97 26 chr9 108965860 108965973 -8896654 + L2 LINE L2 3136 3256 -16 24 0 0 0 chr9 108966203 108966227 -8896400 + GC_rich Low_complexity Low_complexity 1 24 0 181 288 78 94 chr9 108968228 108968355 -8894272 + MER5A DNA MER1_type 2 127 -62 2059 133 13 7 chr9 108968355 108968655 -8893972 - AluSx SINE Alu -10 302 1 181 288 78 94 chr9 108968655 108968718 -8893909 + MER5A DNA MER1_type 127 189 0 204 316 113 0 chr9 108968753 108968886 -8893741 + MIR SINE MIR 25 172 -90 2235 132 0 0 chr9 108968980 108969290 -8893337 - AluSx SINE Alu -2 310 1 711 237 193 44 chr9 108969907 108970132 -8892495 + MLT1K LTR MaLR 220 509 -79 2827 109 24 5 chr9 108970132 108970552 -8892075 - MSTA LTR MaLR 0 428 1 711 237 193 44 chr9 108970552 108970647 -8891980 + MLT1K LTR MaLR 509 588 0 191 281 0 0 chr9 108970688 108970745 -8891882 - L2 LINE L2 -8 3264 3208 208 316 7 58 chr9 108970871 108971010 -8891617 - L2 LINE L2 -213 3059 2928 324 263 141 39 chr9 108971110 108971266 -8891361 - MIR SINE MIR -3 259 88 1625 166 31 21 chr9 108971342 108971631 -8890996 - AluJo SINE Alu -20 292 1 311 220 34 85 chr9 108972842 108972960 -8889667 + L2 LINE L2 3161 3272 0 1146 158 25 54 chr9 108972984 108973120 -8889507 + L1MB3 LINE L1 5676 5804 -379 2317 95 0 7 chr9 108973120 108973414 -8889213 - AluSx SINE Alu -20 292 1 1146 158 25 54 chr9 108973414 108973517 -8889110 + L1MB3 LINE L1 5804 5908 -275 539 151 47 19 chr9 108973517 108973623 -8889004 + FLAM_C SINE Alu 1 109 -34 1034 147 50 11 chr9 108973623 108973860 -8888767 + L1MB3 LINE L1 5919 6169 -2 2241 107 0 10 chr9 108973904 108974066 -8888561 - AluSx SINE Alu -17 295 136 2145 62 55 48 chr9 108974066 108974358 -8888269 - AluSc SINE Alu -15 294 1 2241 107 0 10 chr9 108974358 108974493 -8888134 - AluSx SINE Alu -176 136 1 664 214 96 26 chr9 108974524 108974795 -8887832 - L1MC5 LINE L1 -44 7917 7628 34 72 0 0 chr9 108974878 108974947 -8887680 + AT_rich Low_complexity Low_complexity 1 69 0 753 274 97 43 chr9 108975014 108975459 -8887168 - L1MC5 LINE L1 -389 7572 7104 1525 113 128 27 chr9 108975463 108975755 -8886872 - AluSx SINE Alu 0 318 1 2543 84 3 0 chr9 108976155 108976466 -8886161 + AluSq SINE Alu 1 312 -1 180 213 0 43 chr9 108976758 108976773 -8885854 - MIR SINE MIR 0 262 218 186 188 0 0 chr9 108976773 108976805 -8885822 - L2 LINE L2 -19 3294 3263 189 259 3 54 chr9 108976827 108976906 -8885721 + MIR SINE MIR 24 101 -107 348 190 0 50 chr9 108976998 108977098 -8885529 + MLT1H LTR MaLR 50 144 -405 275 197 16 0 chr9 108977409 108977470 -8885157 + MIR SINE MIR 146 207 -55 1605 154 16 69 chr9 108977551 108977856 -8884771 + AluSx SINE Alu 1 289 -23 294 307 106 26 chr9 108978018 108978207 -8884420 - L3 LINE CR1 -3 1574 1371 2178 121 0 3 chr9 108978212 108978510 -8884117 - AluSq SINE Alu -16 297 1 287 191 113 107 chr9 108978588 108978721 -8883906 + MIR SINE MIR 24 160 -102 1895 123 26 39 chr9 108978721 108979031 -8883596 + AluJb SINE Alu 1 306 -6 287 191 113 107 chr9 108979031 108979065 -8883562 + MIR SINE MIR 160 192 -70 2558 86 0 0 chr9 108979203 108979506 -8883121 - AluSq SINE Alu -10 303 1 222 352 36 26 chr9 108979831 108980024 -8882603 + L3 LINE CR1 981 1175 -402 2465 95 0 16 chr9 108980087 108980404 -8882223 - AluSx SINE Alu 0 312 1 400 267 111 12 chr9 108980420 108980592 -8882035 - MIR SINE MIR -72 190 2 457 267 26 0 chr9 108980616 108980732 -8881895 + MER63 DNA MER1_type 2 746 -316 264 361 14 7 chr9 108981097 108981241 -8881386 + MIR3 SINE MIR 48 192 -16 432 0 0 0 chr9 108981511 108981559 -8881068 + (CA)n Simple_repeat Simple_repeat 2 49 0 1878 139 39 0 chr9 108981990 108982271 -8880356 - AluJo SINE Alu -20 292 1 259 326 63 0 chr9 108982287 108982382 -8880245 - MIR SINE MIR -68 194 94 304 361 84 0 chr9 108982409 108982564 -8880063 + MIR SINE MIR 40 207 -55 192 176 0 0 chr9 108983182 108983216 -8879411 - L2 LINE L2 -1 3271 3238 257 284 224 16 chr9 108983369 108983511 -8879116 - L2 LINE L2 -72 3241 3051 2212 101 3 7 chr9 108983511 108983819 -8878808 + AluSx SINE Alu 1 307 -5 257 284 224 16 chr9 108983819 108983859 -8878768 - L2 LINE L2 -262 3051 3021 2079 119 0 13 chr9 108983918 108984243 -8878384 + AluSq SINE Alu 1 313 0 335 269 135 21 chr9 108984679 108984820 -8877807 - MIR SINE MIR -69 193 37 1912 131 41 0 chr9 108984832 108985122 -8877505 - AluSx SINE Alu -10 302 1 313 321 31 23 chr9 108985289 108985423 -8877204 + MER5A DNA MER1_type 1 145 -44 2297 90 7 0 chr9 108986391 108986692 -8875935 - AluSp SINE Alu -10 303 1 21 0 0 0 chr9 108987194 108987215 -8875412 + AT_rich Low_complexity Low_complexity 1 21 0 830 161 0 0 chr9 108987217 108987341 -8875286 - FLAM_C SINE Alu -9 124 1 309 365 93 18 chr9 108987541 108987875 -8874752 - L2 LINE L2 0 3272 2914 328 220 64 46 chr9 108988595 108988704 -8873923 - L2 LINE L2 -1 3271 3161 1267 180 150 26 chr9 108988804 108989071 -8873556 - AluJo SINE Alu -1 301 2 226 158 0 35 chr9 108989535 108989592 -8873035 + GA-rich Low_complexity Low_complexity 3 57 0 2232 78 3 7 chr9 108989749 108990044 -8872583 - AluSg SINE Alu -16 294 1 2235 104 0 0 chr9 108990059 108990367 -8872260 - AluSx SINE Alu 0 312 5 377 337 26 24 chr9 108990938 108991146 -8871481 - MIR SINE MIR -35 227 19 740 190 0 0 chr9 108991217 108991354 -8871273 - MIR SINE MIR -102 160 24 942 153 13 0 chr9 108991486 108991643 -8870984 - AluJb SINE Alu -20 292 134 2139 116 0 0 chr9 108991643 108991936 -8870691 - AluSg SINE Alu -17 293 1 223 327 99 0 chr9 108992248 108992349 -8870278 - L2 LINE L2 -9 3263 3153 1552 121 3 118 chr9 108992395 108992725 -8869902 - AluSp SINE Alu -11 292 1 208 184 0 41 chr9 108992790 108992839 -8869788 - L2 LINE L2 -92 3180 3134 206 318 15 0 chr9 108993441 108993507 -8869120 + L2 LINE L2 3205 3271 -1 734 146 23 23 chr9 108993838 108994009 -8868618 - MER53 DNA DNA -1 188 18 1220 179 80 5 chr9 108994037 108994261 -8868366 - AluSp SINE Alu -72 241 1 294 316 0 0 chr9 108995103 108995182 -8867445 - MIR SINE MIR -77 185 107 521 303 49 0 chr9 108995447 108995589 -8867038 - MER5B DNA MER1_type 0 178 30 1068 183 3 6 chr9 108995851 108996213 -8866414 + (TCCA)n Simple_repeat Simple_repeat 1 360 0 228 255 0 0 chr9 108996215 108996262 -8866365 + (TTCA)n Simple_repeat Simple_repeat 1 47 0 893 162 0 6 chr9 108996262 108996441 -8866186 + (TCCA)n Simple_repeat Simple_repeat 3 180 0 1017 140 0 0 chr9 108996461 108996639 -8865988 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 383 333 62 0 chr9 108996665 108996809 -8865818 - L2 LINE L2 -5 3267 3115 213 382 15 0 chr9 108996917 108996985 -8865642 + L2 LINE L2 2974 3042 -271 199 379 21 0 chr9 108997263 108997358 -8865269 - MIR SINE MIR -50 212 116 545 282 64 67 chr9 108997590 108997888 -8864739 + MLT1I LTR MaLR 113 409 0 302 316 85 14 chr9 108998881 108999093 -8863534 - LTR16C LTR ERVL 0 491 265 233 228 51 89 chr9 108999330 108999409 -8863218 - MIR3 SINE MIR -47 161 86 451 345 31 16 chr9 108999872 109000063 -8862564 - MIR SINE MIR -37 225 32 225 94 0 0 chr9 109000700 109000732 -8861895 + (GGGA)n Simple_repeat Simple_repeat 3 34 0 316 291 0 0 chr9 109001316 109001395 -8861232 - L2 LINE L2 -1 3271 3193 782 316 46 74 chr9 109001651 109001698 -8860929 - L1MEd LINE L1 -5122 997 950 2026 119 0 29 chr9 109001698 109002008 -8860619 - AluSx SINE Alu -11 301 1 782 316 46 74 chr9 109002008 109002422 -8860205 - L1MEd LINE L1 -5169 950 561 705 368 61 44 chr9 109002435 109003418 -8859209 + L1MCa LINE L1 1936 5383 -1043 333 188 12 59 chr9 109003348 109003433 -8859194 - L1MCa LINE L1 -4363 2063 1983 * 1818 133 54 4 chr9 109003447 109003726 -8858901 - AluJb SINE Alu -19 293 1 433 329 51 63 chr9 109004018 109004444 -8858183 + L2 LINE L2 2680 3098 -174 200 343 0 67 chr9 109004903 109005008 -8857619 + MIR SINE MIR 80 177 -85 313 194 16 0 chr9 109005635 109005697 -8856930 - MIR SINE MIR -64 144 82 345 353 113 20 chr9 109005851 109006304 -8856323 - L2 LINE L2 -523 2791 2297 377 243 117 0 chr9 109006885 109006996 -8855631 + L2 LINE L2 3181 3304 -9 2005 128 16 3 chr9 109007004 109007309 -8855318 - AluSx SINE Alu -3 309 1 294 342 9 26 chr9 109007402 109007516 -8855111 + MIR SINE MIR 132 243 -19 2244 106 0 0 chr9 109007751 109008052 -8854575 - AluSx SINE Alu -11 301 1 864 145 0 36 chr9 109008275 109008413 -8854214 - FLAM_C SINE Alu 0 133 1 242 306 134 13 chr9 109008417 109008574 -8854053 - L1ME LINE L1 -345 5776 5601 2067 81 60 0 chr9 109009329 109009612 -8853015 - AluSq SINE Alu -13 300 1 229 318 147 45 chr9 109009667 109009865 -8852762 + MIR SINE MIR 45 262 0 2091 111 0 7 chr9 109009936 109010234 -8852393 + AluSg SINE Alu 1 296 -14 1889 113 68 0 chr9 109010256 109010549 -8852078 - AluSp SINE Alu 0 313 1 244 295 86 60 chr9 109011842 109012076 -8850551 + L1ME LINE L1 5659 5898 -223 448 205 34 51 chr9 109012136 109012253 -8850374 - MIR SINE MIR -102 160 46 359 267 137 20 chr9 109012278 109012323 -8850304 + HAL1b LINE L1 1186 1224 -124 2337 93 0 0 chr9 109012323 109012623 -8850004 + AluSp SINE Alu 1 300 -13 359 267 137 20 chr9 109012623 109012723 -8849904 + HAL1b LINE L1 1224 1348 0 386 273 55 0 chr9 109013395 109013523 -8849104 + L1MC/D LINE L1 5687 5821 -1987 2459 74 0 0 chr9 109013527 109013838 -8848789 - AluY SINE Alu 0 311 1 1301 194 49 0 chr9 109013859 109014106 -8848521 + AluJo SINE Alu 1 259 -53 252 299 17 51 chr9 109014216 109014333 -8848294 - MER5A DNA MER1_type -50 139 27 1806 137 53 0 chr9 109014478 109014762 -8847865 - AluSx SINE Alu -13 299 1 932 221 119 55 chr9 109014763 109015215 -8847412 - L1ME3 LINE L1 -16 6146 5666 208 327 0 0 chr9 109015265 109015320 -8847307 + MIR SINE MIR 148 202 -60 729 177 9 0 chr9 109016255 109016368 -8846259 + FLAM_C SINE Alu 4 117 -26 1679 161 3 41 chr9 109016389 109016573 -8846054 - AluJb SINE Alu -2 310 141 1808 105 61 51 chr9 109016573 109016867 -8845760 - AluSx SINE Alu -15 297 1 1679 161 3 41 chr9 109016867 109016998 -8845629 - AluJb SINE Alu -171 141 7 944 264 67 78 chr9 109017716 109018298 -8844329 + L2 LINE L2 2688 3271 -1 2074 139 10 0 chr9 109018364 109018673 -8843954 - AluJb SINE Alu 0 312 1 2348 78 0 0 chr9 109019182 109019476 -8843151 + AluSg SINE Alu 1 294 -16 600 237 47 6 chr9 109019493 109019662 -8842965 - MIR SINE MIR -8 254 79 192 324 78 42 chr9 109019715 109019857 -8842770 + MER5B DNA MER1_type 15 161 -17 231 311 109 0 chr9 109019730 109019849 -8842778 - MER5A DNA MER1_type -21 168 37 302 354 81 6 chr9 109019866 109020027 -8842600 - MIR3 SINE MIR -13 195 23 2256 68 0 0 chr9 109020027 109020334 -8842293 - AluY SINE Alu 0 309 3 437 337 57 11 chr9 109021342 109021517 -8841110 - MIR SINE MIR -32 230 48 433 316 48 18 chr9 109022369 109022537 -8840090 + MER5A DNA MER1_type 17 189 0 212 326 35 43 chr9 109023840 109023981 -8838646 + MIR3 SINE MIR 1 140 -68 243 179 0 18 chr9 109024850 109024906 -8837721 + G-rich Low_complexity Low_complexity 3 57 0 240 167 0 0 chr9 109026392 109026440 -8836187 + (TG)n Simple_repeat Simple_repeat 1 48 0 2453 47 7 3 chr9 109028526 109028827 -8833800 + AluY SINE Alu 1 302 -9 2007 117 0 0 chr9 109028840 109029113 -8833514 + AluSx SINE Alu 21 293 -19 2157 120 7 0 chr9 109029118 109029418 -8833209 + AluSx SINE Alu 1 302 -10 191 61 30 0 chr9 109032049 109032082 -8830545 + (GGGTG)n Simple_repeat Simple_repeat 5 38 0 390 283 157 18 chr9 109033142 109033308 -8829319 + MIR SINE MIR 47 235 -27 297 157 100 0 chr9 109033704 109033774 -8828853 + MIR SINE MIR 109 185 -77 266 301 191 4 chr9 109034092 109034338 -8828289 - L2 LINE L2 -654 2660 2369 459 209 43 35 chr9 109035906 109036021 -8826606 + L2 LINE L2 3172 3287 -26 190 324 122 43 chr9 109036480 109036758 -8825869 + L2 LINE L2 2812 3111 -161 203 283 196 11 chr9 109036950 109037042 -8825585 + L2 LINE L2 3202 3310 -3 302 260 58 0 chr9 109037451 109037555 -8825072 - L2 LINE L2 -1 3271 3162 2253 82 10 3 chr9 109037934 109038237 -8824390 + AluSg SINE Alu 1 305 -5 353 236 79 24 chr9 109039486 109039613 -8823014 + MIR SINE MIR 45 178 -84 2195 119 3 3 chr9 109039777 109040089 -8822538 - AluSx SINE Alu 0 312 1 249 333 81 0 chr9 109040132 109040231 -8822396 - L2 LINE L2 -4 3268 3162 228 111 0 0 chr9 109040812 109040848 -8821779 + (TCC)n Simple_repeat Simple_repeat 3 38 0 2030 126 3 0 chr9 109041318 109041611 -8821016 - AluSx SINE Alu -18 294 1 1422 162 35 70 chr9 109041617 109041932 -8820695 - AluJb SINE Alu -6 306 3 623 318 109 47 chr9 109041936 109042319 -8820308 + L2 LINE L2 2454 2812 -501 2465 56 0 3 chr9 109042319 109042621 -8820006 - AluY SINE Alu -10 301 1 623 318 109 47 chr9 109042621 109042774 -8819853 + L2 LINE L2 2812 2954 -359 2485 72 0 0 chr9 109042774 109043080 -8819547 - AluY SINE Alu -5 306 1 623 318 109 47 chr9 109043080 109043332 -8819295 + L2 LINE L2 2954 3304 -9 240 35 0 0 chr9 109043334 109043363 -8819264 + (TGAA)n Simple_repeat Simple_repeat 4 32 0 187 304 0 0 chr9 109043365 109043411 -8819216 + L3 LINE CR1 1430 1475 -102 2055 137 0 3 chr9 109043710 109044023 -8818604 + AluSx SINE Alu 1 312 0 2187 118 0 10 chr9 109044207 109044511 -8818116 - AluSx SINE Alu -11 301 1 702 303 146 6 chr9 109044516 109044962 -8817665 - L2 LINE L2 -25 3288 2765 293 243 15 22 chr9 109044978 109045114 -8817513 + CT-rich Low_complexity Low_complexity 2 136 0 2105 142 3 0 chr9 109045115 109045426 -8817201 - AluJb SINE Alu 0 312 1 648 230 132 0 chr9 109045453 109045627 -8817000 - MER63A DNA MER1_type 0 210 14 644 307 143 47 chr9 109045628 109045844 -8816783 - L2 LINE L2 -564 2750 2556 2097 102 16 7 chr9 109045844 109046147 -8816480 - AluSx SINE Alu -6 306 1 644 307 143 47 chr9 109046147 109046545 -8816082 - L2 LINE L2 -758 2556 2077 607 262 57 18 chr9 109046706 109046935 -8815692 + MLT1K LTR MaLR 109 346 -242 * 1246 167 49 89 chr9 109046934 109047185 -8815442 - MER45B DNA AcHobo -541 1040 804 1869 126 25 7 chr9 109047185 109047492 -8815135 - AluSx SINE Alu 0 312 1 1246 167 49 89 chr9 109047492 109047586 -8815041 - MER45B DNA AcHobo -777 804 708 1394 254 184 26 chr9 109047774 109048344 -8814283 - MER45C DNA AcHobo -265 688 29 479 234 18 58 chr9 109048375 109048546 -8814081 + MLT1K LTR MaLR 392 555 -33 390 106 12 24 chr9 109048852 109048937 -8813690 + (TG)n Simple_repeat Simple_repeat 2 85 0 2264 110 0 0 chr9 109049011 109049311 -8813316 + AluSx SINE Alu 1 300 -12 318 98 0 0 chr9 109049452 109049503 -8813124 + (TTCA)n Simple_repeat Simple_repeat 4 54 0 1979 137 0 13 chr9 109049723 109049885 -8812742 - AluJb SINE Alu -17 295 137 1825 115 0 4 chr9 109049885 109050146 -8812481 - AluSg SINE Alu -16 294 35 1979 137 0 13 chr9 109050146 109050282 -8812345 - AluJb SINE Alu -175 137 1 330 295 218 19 chr9 109050390 109050546 -8812081 - MIR SINE MIR -12 250 64 2050 74 64 24 chr9 109050547 109050843 -8811784 + AluSp SINE Alu 1 308 -5 288 263 154 35 chr9 109051368 109051527 -8811100 - MIR3 SINE MIR -22 186 10 2011 119 13 6 chr9 109051665 109051976 -8810651 - AluSq SINE Alu 0 313 1 438 301 39 20 chr9 109052048 109052251 -8810376 + MLT1J2 LTR MaLR 1 207 -243 236 263 38 12 chr9 109052411 109052491 -8810136 + MLT1I LTR MaLR 324 405 -4 853 201 92 86 chr9 109052500 109052585 -8810042 + L2 LINE L2 3008 3091 -222 1806 125 24 27 chr9 109052585 109052881 -8809746 - AluSx SINE Alu -6 306 12 853 201 92 86 chr9 109052881 109053099 -8809528 + L2 LINE L2 3091 3313 0 1960 122 21 0 chr9 109053108 109053394 -8809233 - AluJb SINE Alu -20 292 1 2099 89 34 3 chr9 109053555 109053848 -8808779 + AluSq SINE Alu 6 307 -6 216 0 0 0 chr9 109053848 109053872 -8808755 + (TA)n Simple_repeat Simple_repeat 2 25 0 2331 95 0 3 chr9 109053916 109054222 -8808405 - AluSg SINE Alu -5 305 1 428 296 81 16 chr9 109054300 109054486 -8808141 - MIR3 SINE MIR -8 200 3 426 253 47 0 chr9 109054914 109055064 -8807563 - L1ME4a LINE L1 0 6121 5965 2191 115 3 0 chr9 109055725 109056030 -8806597 - AluSx SINE Alu -2 310 5 322 296 136 50 chr9 109056049 109056350 -8806277 + MLT1K LTR MaLR 252 578 -10 386 241 222 0 chr9 109056629 109056737 -8805890 + MIR SINE MIR 69 200 -62 217 311 33 11 chr9 109056763 109056853 -8805774 + L2 LINE L2 3221 3312 -1 180 0 0 0 chr9 109056922 109056942 -8805685 + (CA)n Simple_repeat Simple_repeat 1 20 0 277 227 0 15 chr9 109059018 109059084 -8803543 + GA-rich Low_complexity Low_complexity 1 65 0 201 182 0 0 chr9 109059137 109059170 -8803457 + A-rich Low_complexity Low_complexity 1 33 0 207 196 0 36 chr9 109060197 109060253 -8802374 + G-rich Low_complexity Low_complexity 1 54 0 29 70 0 0 chr9 109060524 109060581 -8802046 + GC_rich Low_complexity Low_complexity 1 57 0 21 36 0 0 chr9 109060742 109060770 -8801857 + AT_rich Low_complexity Low_complexity 1 28 0 25 51 0 0 chr9 109061136 109061175 -8801452 + GC_rich Low_complexity Low_complexity 1 39 0 244 174 0 65 chr9 109061426 109061518 -8801109 + G-rich Low_complexity Low_complexity 1 86 0 189 107 0 0 chr9 109061551 109061579 -8801048 + (CGG)n Simple_repeat Simple_repeat 2 29 0 37 62 0 0 chr9 109061669 109061734 -8800893 + GC_rich Low_complexity Low_complexity 1 65 0 223 239 0 0 chr9 109061734 109061805 -8800822 + (CTG)n Simple_repeat Simple_repeat 1 71 0 204 40 0 0 chr9 109061927 109061952 -8800675 + (CTG)n Simple_repeat Simple_repeat 1 25 0 24 0 0 0 chr9 109062198 109062222 -8800405 + GC_rich Low_complexity Low_complexity 1 24 0 226 310 23 11 chr9 109063260 109063347 -8799280 - MIR SINE MIR -68 140 53 283 188 47 16 chr9 109063979 109064043 -8798584 - MIR SINE MIR -62 146 81 2387 73 0 3 chr9 109064319 109064622 -8798005 + AluY SINE Alu 1 302 -9 291 333 11 11 chr9 109064841 109064928 -8797699 - MIR SINE MIR -146 116 30 357 337 39 22 chr9 109066570 109066748 -8795879 - MIR3 SINE MIR -25 183 3 472 282 128 0 chr9 109067132 109067288 -8795339 - MIR SINE MIR -14 248 73 297 75 0 0 chr9 109067470 109067510 -8795117 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 227 150 0 0 chr9 109067658 109067698 -8794929 + MER117 DNA MER1_type 114 153 -44 311 272 73 59 chr9 109067774 109067910 -8794717 + MIR3 SINE MIR 7 144 -64 552 188 0 0 chr9 109068061 109068194 -8794433 + (TG)n Simple_repeat Simple_repeat 1 133 0 253 350 84 21 chr9 109068418 109068561 -8794066 - MIR SINE MIR -28 234 83 12291 40 4 1 chr9 109069181 109071597 -8791030 - L1PA4 LINE L1 -20 6135 3711 827 143 24 8 chr9 109071703 109071829 -8790798 + AluJo/FLAM SINE Alu 2 129 -173 2139 107 0 0 chr9 109071829 109072119 -8790508 - AluSx SINE Alu -21 291 2 1320 120 10 19 chr9 109072136 109072388 -8790239 + AluSp SINE Alu 87 313 0 385 161 129 11 chr9 109072441 109072534 -8790093 - MIR SINE MIR -64 144 41 210 399 98 0 chr9 109072641 109072834 -8789793 + L2 LINE L2 2434 2645 -669 666 325 113 30 chr9 109072886 109073345 -8789282 + L2 LINE L2 2805 3301 -12 1763 122 75 20 chr9 109073355 109073649 -8788978 - AluSg SINE Alu 0 310 1 186 339 83 25 chr9 109073675 109073796 -8788831 + MIR SINE MIR 129 256 -6 317 376 115 8 chr9 109074091 109074325 -8788302 + L3 LINE CR1 692 950 -627 36 0 0 0 chr9 109074412 109074448 -8788179 + AT_rich Low_complexity Low_complexity 1 36 0 786 153 0 0 chr9 109074448 109074566 -8788061 - FLAM_C SINE Alu -15 118 1 673 314 27 0 chr9 109074792 109074980 -8787647 + MIR SINE MIR 35 227 -35 523 360 33 12 chr9 109075177 109075419 -8787208 - MIR SINE MIR 0 262 16 2598 76 8 91 chr9 109075846 109076243 -8786384 + THE1B LTR MaLR 1 364 0 5233 172 44 42 chr9 109076269 109076516 -8786111 + L1MB7 LINE L1 4004 4249 -1935 222 37 0 0 chr9 109076516 109076543 -8786084 + (CA)n Simple_repeat Simple_repeat 2 28 0 5233 172 44 42 chr9 109076543 109076763 -8785864 + L1MB7 LINE L1 4249 4467 -1717 1939 155 7 0 chr9 109076763 109077067 -8785560 + AluJo SINE Alu 3 308 -4 5233 172 44 42 chr9 109077067 109077639 -8784988 + L1MB7 LINE L1 4467 5037 -1147 2095 113 0 0 chr9 109077639 109077921 -8784706 + AluSx SINE Alu 1 282 -30 5233 172 44 42 chr9 109077921 109078566 -8784061 + L1MB7 LINE L1 5037 5685 -499 2060 117 33 0 chr9 109078566 109078866 -8783761 - AluSq SINE Alu -3 310 1 5233 172 44 42 chr9 109078866 109079322 -8783305 + L1MB7 LINE L1 5685 6139 -45 1401 148 41 29 chr9 109079323 109079404 -8783223 + AluJb SINE Alu 49 128 -184 216 0 0 0 chr9 109079404 109079428 -8783199 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1401 148 41 29 chr9 109079428 109079590 -8783037 + AluJb SINE Alu 128 295 -17 287 267 102 67 chr9 109079647 109079700 -8782927 + L1MC5 LINE L1 7345 7395 -566 2053 125 7 23 chr9 109079700 109080005 -8782622 + AluSx SINE Alu 1 300 -12 287 267 102 67 chr9 109080005 109080176 -8782451 + L1MC5 LINE L1 7395 7577 -384 285 51 0 0 chr9 109080345 109080384 -8782243 + (TG)n Simple_repeat Simple_repeat 1 39 0 330 257 68 68 chr9 109080899 109081047 -8781580 + MIR SINE MIR 24 171 -91 1879 137 0 34 chr9 109081992 109082313 -8780314 + AluJb SINE Alu 1 310 -2 361 253 11 0 chr9 109083533 109083711 -8778916 + (CCCCAA)n Simple_repeat Simple_repeat 1 180 0 252 143 0 0 chr9 109083735 109083777 -8778850 + (TCCC)n Simple_repeat Simple_repeat 3 44 0 * 954 190 10 31 chr9 109083769 109083964 -8778663 - AluJo SINE Alu 0 312 122 1910 156 7 19 chr9 109083777 109084085 -8778542 - AluJo SINE Alu -8 304 1 659 293 78 32 chr9 109084407 109084755 -8777872 + L2 LINE L2 2920 3283 -30 267 31 0 0 chr9 109084769 109084801 -8777826 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 217 200 154 0 chr9 109085476 109085541 -8777086 - MIR SINE MIR -117 145 71 1947 165 64 50 chr9 109086577 109087074 -8775553 - MLT1D LTR MaLR 0 505 2 303 326 59 36 chr9 109087514 109087735 -8774892 + L2 LINE L2 3027 3252 -20 398 219 26 35 chr9 109087923 109088037 -8774590 - MIR SINE MIR -33 229 117 2439 88 0 10 chr9 109088186 109088493 -8774134 - AluSc SINE Alu -5 304 1 817 184 6 6 chr9 109088634 109088813 -8773814 + L1MB3 LINE L1 6005 6183 0 234 265 72 12 chr9 109089108 109089191 -8773436 + MIR SINE MIR 80 167 -95 328 337 39 0 chr9 109089300 109089478 -8773149 + MIR3 SINE MIR 15 199 -9 2477 95 0 0 chr9 109089826 109090132 -8772495 - AluSq SINE Alu -7 306 1 336 324 68 11 chr9 109090576 109090684 -8771943 - MIR SINE MIR -20 242 142 1811 144 113 66 chr9 109090684 109091093 -8771534 - MSTA LTR MaLR 0 428 1 336 324 68 11 chr9 109091093 109091143 -8771484 - MIR SINE MIR -120 142 71 2653 169 2 36 chr9 109091143 109091375 -8771252 - MER66B LTR ERV1 0 486 248 2108 121 0 3 chr9 109091375 109091686 -8770941 - AluSx SINE Alu 0 310 1 2653 169 2 36 chr9 109091686 109091955 -8770672 - MER66B LTR ERV1 -238 248 1 336 324 68 11 chr9 109091955 109091971 -8770656 - MIR SINE MIR -191 71 57 2091 124 0 0 chr9 109092299 109092602 -8770025 - AluSx SINE Alu 0 303 1 574 281 51 47 chr9 109092679 109092935 -8769692 - L2 LINE L2 -2 3311 3055 1433 137 0 19 chr9 109092998 109093209 -8769418 - AluSx SINE Alu -105 207 1 875 185 19 0 chr9 109093284 109093446 -8769181 - FAM SINE Alu -10 165 1 1769 176 12 6 chr9 109093452 109093792 -8768835 - L1MB3 LINE L1 -45 6138 5797 628 294 81 17 chr9 109093838 109094182 -8768445 - L2 LINE L2 -1166 2148 1783 987 184 6 0 chr9 109094191 109094354 -8768273 - FRAM SINE Alu -20 156 1 536 317 126 2 chr9 109094354 109094805 -8767822 - L2 LINE L2 -1531 1783 1277 294 281 33 25 chr9 109094834 109094955 -8767672 - MIR SINE MIR -19 243 122 1695 174 30 9 chr9 109094971 109095282 -8767345 + MLT1A1 LTR MaLR 1 321 -44 1623 142 75 32 chr9 109095282 109095564 -8767063 - AluJb SINE Alu -18 294 1 1695 174 30 9 chr9 109095564 109095585 -8767042 + MLT1A1 LTR MaLR 321 340 -25 243 170 19 19 chr9 109095660 109095713 -8766914 + MLT1A1 LTR MaLR 308 360 -5 1438 157 0 18 chr9 109095899 109095991 -8766636 - AluSq SINE Alu -88 225 133 2364 97 3 3 chr9 109095991 109096299 -8766328 - AluSp SINE Alu -5 308 1 1438 157 0 18 chr9 109096299 109096435 -8766192 - AluSq SINE Alu -180 133 1 326 285 118 0 chr9 109096435 109096579 -8766048 - L1ME4a LINE L1 -272 5849 5689 2234 127 0 0 chr9 109096712 109097011 -8765616 + AluSx SINE Alu 1 299 -13 1357 206 186 8 chr9 109097484 109097872 -8764755 - MLT1C LTR MaLR -8 459 3 2320 106 3 0 chr9 109098439 109098740 -8763887 - AluSx SINE Alu -10 302 1 308 340 167 18 chr9 109098774 109099115 -8763512 + L2 LINE L2 2830 3221 -51 2555 180 10 26 chr9 109099121 109099615 -8763012 + MER66B LTR ERV1 1 486 0 276 242 16 0 chr9 109100094 109100156 -8762471 + L2 LINE L2 3250 3312 -1 297 244 58 0 chr9 109100159 109100245 -8762382 + MIR SINE MIR 40 130 -132 3548 165 44 1 chr9 109100459 109101119 -8761508 + L1MB3 LINE L1 5462 6149 -34 1732 121 0 15 chr9 109101221 109101485 -8761142 + AluY SINE Alu 40 299 -12 1426 105 0 43 chr9 109101485 109101695 -8760932 + AluSg/x SINE Alu 106 306 -4 396 281 74 0 chr9 109101807 109101942 -8760685 + L2 LINE L2 2671 2815 -499 2589 74 0 0 chr9 109102942 109103253 -8759374 + AluSx SINE Alu 1 311 -1 902 188 0 0 chr9 109103558 109103702 -8758925 + FRAM SINE Alu 2 145 -31 186 43 0 0 chr9 109103705 109103728 -8758899 + (TAA)n Simple_repeat Simple_repeat 2 24 0 391 333 71 11 chr9 109103756 109103939 -8758688 - MIR SINE MIR -30 232 39 718 213 9 37 chr9 109105618 109105834 -8756793 - MER113 DNA MER1_type? -248 273 64 230 308 33 0 chr9 109107021 109107112 -8755515 - MER5A DNA MER1_type -91 98 5 550 221 39 7 chr9 109107289 109107443 -8755184 - MER5A DNA MER1_type -28 161 3 403 277 6 14 chr9 109107639 109107796 -8754831 - MIR SINE MIR -60 148 26 2378 88 0 13 chr9 109109364 109109671 -8752956 - AluSq SINE Alu -6 307 5 304 197 15 0 chr9 109109677 109109743 -8752884 - MIR SINE MIR -115 147 81 195 138 0 0 chr9 109110227 109110256 -8752371 - L2 LINE L2 -18 3295 3267 217 151 57 19 chr9 109110644 109110697 -8751930 + L2 LINE L2 3009 3063 -250 1662 154 15 4 chr9 109110824 109111096 -8751531 + AluSx SINE Alu 1 275 -37 234 331 20 7 chr9 109111172 109111323 -8751304 + MER53 DNA DNA 33 185 -4 366 261 39 59 chr9 109112125 109112278 -8750349 + MIR SINE MIR 3 152 -56 450 0 0 0 chr9 109112530 109112580 -8750047 + (TG)n Simple_repeat Simple_repeat 1 50 0 1899 162 0 19 chr9 109113866 109114174 -8748453 + AluJb SINE Alu 1 302 -10 387 156 52 0 chr9 109114178 109114274 -8748353 + GA-rich Low_complexity Low_complexity 4 104 0 417 264 8 16 chr9 109114753 109114882 -8747745 + L2 LINE L2 3185 3312 -1 250 196 0 0 chr9 109115281 109115332 -8747295 - L1 LINE L1 -3851 2295 2245 1708 124 60 0 chr9 109115335 109115584 -8747043 + AluSx SINE Alu 11 274 -38 345 185 15 9 chr9 109115687 109115770 -8746857 - AluS SINE Alu -238 65 1 844 171 0 29 chr9 109115832 109115972 -8746655 - AluJo SINE Alu -176 136 1 1169 137 0 0 chr9 109115995 109116156 -8746471 + AluSg/x SINE Alu 132 292 -18 556 190 49 7 chr9 109116156 109116298 -8746329 - L1MD2 LINE L1 -17 6342 6195 661 319 70 0 chr9 109116299 109116540 -8746087 - L1MD2 LINE L1 -217 6142 5885 1226 137 0 6 chr9 109116540 109116723 -8745904 - AluJo SINE Alu -11 301 120 804 161 0 0 chr9 109116754 109116884 -8745743 - AluJo SINE Alu -171 131 2 618 218 222 13 chr9 109116889 109116949 -8745678 - L1ME1 LINE L1 -281 6279 6233 1887 107 0 23 chr9 109116949 109117211 -8745416 - AluSc SINE Alu -15 294 39 618 218 222 13 chr9 109117211 109117384 -8745243 - L1ME1 LINE L1 -327 6233 5997 2156 127 7 0 chr9 109117384 109117675 -8744952 - AluSq SINE Alu -20 293 1 4041 243 60 41 chr9 109117687 109118103 -8744524 - L1ME1 LINE L1 -1953 4587 4181 1839 175 3 3 chr9 109118103 109118395 -8744232 - AluJb SINE Alu -16 296 5 4041 243 60 41 chr9 109118395 109119299 -8743328 - L1ME1 LINE L1 -2359 4181 3296 11361 77 1 1 chr9 109119299 109121642 -8740985 - L1PA7 LINE L1 -1 6153 3809 4041 243 60 41 chr9 109121642 109122478 -8740149 - L1ME1 LINE L1 -3244 3296 2478 1612 195 20 10 chr9 109122478 109122775 -8739852 - AluJo SINE Alu -12 300 1 4041 243 60 41 chr9 109122775 109123537 -8739090 - L1ME1 LINE L1 -4062 2478 1517 686 134 0 8 chr9 109123542 109123661 -8738966 + (TTCC)n Simple_repeat Simple_repeat 2 119 0 1967 122 30 34 chr9 109123671 109123967 -8738660 - AluSg SINE Alu -15 295 1 3476 244 102 21 chr9 109123967 109124776 -8737851 - L1ME1 LINE L1 -5459 1081 178 2238 58 0 0 chr9 109124776 109125069 -8737558 + L1PA4 LINE L1 5859 6151 -4 3476 244 102 21 chr9 109125069 109125243 -8737384 - L1ME1 LINE L1 -6362 178 19 518 247 181 30 chr9 109125239 109125543 -8737084 - L1MDa LINE L1 -4660 1880 1531 * 3798 239 82 50 chr9 109125540 109125999 -8736628 + L1ME2 LINE L1 3474 3917 -2247 252 0 0 0 chr9 109125999 109126027 -8736600 + (CA)n Simple_repeat Simple_repeat 2 29 0 189 0 0 0 chr9 109126026 109126047 -8736580 + (TC)n Simple_repeat Simple_repeat 1 21 0 * 3798 239 82 50 chr9 109126027 109126096 -8736531 + L1ME2 LINE L1 3917 3982 -2182 2146 131 0 3 chr9 109126096 109126421 -8736206 + AluSx SINE Alu 1 312 0 3798 239 82 50 chr9 109126421 109127009 -8735618 + L1ME2 LINE L1 3982 4550 -1614 2552 75 3 0 chr9 109127009 109127315 -8735312 + AluSp SINE Alu 1 307 -6 3798 239 82 50 chr9 109127315 109127787 -8734840 + L1ME2 LINE L1 4550 5005 -1159 2160 119 0 14 chr9 109127787 109128082 -8734545 + AluSg SINE Alu 1 291 -19 3798 239 82 50 chr9 109128082 109128382 -8734245 + L1ME2 LINE L1 5005 5294 -870 1904 151 8 51 chr9 109128382 109128734 -8733893 - MER1B DNA MER1_type 0 337 1 3798 239 82 50 chr9 109128734 109129465 -8733162 + L1ME2 LINE L1 5294 6154 -10 1745 162 18 0 chr9 109129883 109130161 -8732466 + AluJo SINE Alu 21 303 -9 2554 182 35 0 chr9 109130313 109130796 -8731831 + MLT1D LTR MaLR 2 501 -4 1848 150 0 17 chr9 109131095 109131382 -8731245 + AluJo SINE Alu 1 282 -30 185 257 30 59 chr9 109131410 109131511 -8731116 - MIR3 SINE MIR -41 167 70 2247 122 3 10 chr9 109131578 109131890 -8730737 + AluSx SINE Alu 1 310 -2 767 269 75 11 chr9 109132230 109132551 -8730076 - MLT1J LTR MaLR -17 494 109 207 0 0 0 chr9 109132551 109132574 -8730053 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2086 88 7 58 chr9 109132577 109132872 -8729755 - AluSg SINE Alu -30 280 1 806 127 8 22 chr9 109132896 109133030 -8729597 - FLAM_C SINE Alu 0 133 2 512 286 109 55 chr9 109133124 109133532 -8729095 + L2 LINE L2 2726 3172 -100 2126 112 14 10 chr9 109133532 109133827 -8728800 + AluSq SINE Alu 1 296 -17 512 286 109 55 chr9 109133827 109133933 -8728694 + L2 LINE L2 3172 3271 -1 1067 169 56 15 chr9 109134114 109134309 -8728318 - MLT1F1 LTR MaLR -8 559 357 183 80 0 0 chr9 109134494 109134519 -8728108 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 2153 115 3 0 chr9 109134519 109134823 -8727804 + AluSp SINE Alu 1 305 -8 363 250 23 23 chr9 109135556 109135644 -8726983 + MIR SINE MIR 87 174 -88 300 53 0 0 chr9 109135911 109135949 -8726678 + (GA)n Simple_repeat Simple_repeat 1 38 0 652 251 9 62 chr9 109136105 109136316 -8726311 + MIR SINE MIR 62 261 -1 1116 158 50 45 chr9 109136328 109136550 -8726077 + AluJo SINE Alu 77 299 -13 1130 229 42 106 chr9 109137496 109137757 -8724870 - MLT2C1 LTR ERVL 0 397 121 2322 90 0 3 chr9 109137757 109138068 -8724559 - AluY SINE Alu -1 310 1 1130 229 42 106 chr9 109138068 109138107 -8724520 - MLT2C1 LTR ERVL -276 121 81 2061 114 17 0 chr9 109138107 109138396 -8724231 - AluSx SINE Alu -18 294 1 1130 229 42 106 chr9 109138396 109138518 -8724109 - MLT2C1 LTR ERVL -316 81 1 2429 141 38 31 chr9 109139218 109139643 -8722984 - MSTC LTR MaLR 0 428 1 333 290 0 16 chr9 109139794 109139918 -8722709 + LTR67 LTR ERVL 433 554 -3 356 211 56 11 chr9 109139919 109140009 -8722618 + MIR SINE MIR 45 138 -70 1305 160 0 35 chr9 109140375 109140606 -8722021 - AluJb SINE Alu -5 307 85 1099 235 55 47 chr9 109140793 109141176 -8721451 + MLT1J2 LTR MaLR 1 386 -64 316 301 142 0 chr9 109142101 109142214 -8720413 - MIR SINE MIR -25 237 109 242 233 318 0 chr9 109142750 109142839 -8719788 + MIR SINE MIR 54 170 -57 310 356 76 0 chr9 109142936 109143068 -8719559 - MIR SINE MIR -118 144 3 231 190 35 0 chr9 109143717 109143775 -8718852 + (TCTCTG)n Simple_repeat Simple_repeat 3 62 0 200 162 27 0 chr9 109144850 109144887 -8717740 + MIR SINE MIR 30 67 -141 422 286 216 7 chr9 109145023 109145296 -8717331 + L2 LINE L2 2890 3219 -53 618 303 28 5 chr9 109145797 109146008 -8716619 - MIR SINE MIR -25 237 22 329 379 23 0 chr9 109146455 109146587 -8716040 + L2 LINE L2 3175 3309 -4 256 240 156 21 chr9 109146584 109146680 -8715947 - MIR SINE MIR -65 143 35 * 366 254 88 44 chr9 109147096 109147210 -8715417 + MIR SINE MIR 38 156 -52 2176 109 13 0 chr9 109147776 109148078 -8714549 + AluSp SINE Alu 2 307 -6 249 306 62 50 chr9 109148217 109148377 -8714250 - MIR SINE MIR -68 194 33 196 383 56 0 chr9 109148465 109148572 -8714055 - L2 LINE L2 -41 3231 3119 2124 98 3 3 chr9 109148675 109148962 -8713665 + AluSq SINE Alu 1 287 -26 1887 159 3 0 chr9 109149180 109149475 -8713152 + AluJb SINE Alu 14 309 -3 2335 97 0 7 chr9 109150145 109150453 -8712174 + AluSg SINE Alu 1 306 -4 2160 121 0 0 chr9 109150453 109150757 -8711870 + AluSq SINE Alu 1 305 -8 219 248 80 24 chr9 109151263 109151370 -8711257 + MIR SINE MIR 16 129 -79 2089 66 0 63 chr9 109152421 109152754 -8709873 + AluSg SINE Alu 1 314 0 1969 136 0 0 chr9 109152884 109153192 -8709435 - AluSx SINE Alu 0 308 1 1157 165 40 139 chr9 109153218 109153564 -8709063 - AluJo SINE Alu 0 312 1 2158 200 123 14 chr9 109153914 109154400 -8708227 - MLT1F LTR MaLR 0 542 4 437 296 107 0 chr9 109155082 109155251 -8707376 + MIR SINE MIR 39 225 -37 246 194 48 48 chr9 109155858 109155920 -8706707 + MIR3 SINE MIR 138 199 -9 2251 97 7 0 chr9 109156211 109156520 -8706107 - AluSp SINE Alu 0 313 3 2455 75 0 0 chr9 109156522 109156830 -8705797 - AluSg SINE Alu -2 308 1 320 291 198 8 chr9 109156865 109157166 -8705461 + L2 LINE L2 2700 3053 -219 181 292 56 14 chr9 109157902 109157974 -8704653 - MIR SINE MIR -89 119 45 2269 105 0 3 chr9 109158369 109158675 -8703952 + AluSq SINE Alu 6 310 -3 229 315 93 7 chr9 109158840 109158977 -8703650 + MIR SINE MIR 30 174 -65 191 238 250 0 chr9 109159162 109159242 -8703385 - MIR3 SINE MIR -14 194 95 784 263 80 5 chr9 109159321 109159545 -8703082 - MIR SINE MIR -7 255 15 313 284 23 64 chr9 109160536 109160724 -8701903 - MIR SINE MIR -63 145 12 334 315 0 11 chr9 109161057 109161196 -8701431 + (TG)n Simple_repeat Simple_repeat 2 140 -40 3361 115 65 41 chr9 109161196 109161321 -8701306 - MER41C LTR ERV1 0 554 433 2022 90 26 58 chr9 109161321 109161633 -8700994 + AluSx SINE Alu 5 306 -6 3361 115 65 41 chr9 109161633 109162048 -8700579 - MER41C LTR ERV1 -121 433 1 334 315 0 11 chr9 109162048 109162089 -8700538 + (TG)n Simple_repeat Simple_repeat 140 180 0 457 277 6 0 chr9 109162665 109162842 -8699785 + (TG)n Simple_repeat Simple_repeat 2 179 0 256 240 21 0 chr9 109162860 109163059 -8699568 + (TG)n Simple_repeat Simple_repeat 1 203 0 286 215 14 25 chr9 109163078 109163360 -8699267 + (TG)n Simple_repeat Simple_repeat 1 279 0 242 215 17 17 chr9 109163398 109163575 -8699052 + (TG)n Simple_repeat Simple_repeat 2 178 0 436 278 23 0 chr9 109163632 109163808 -8698819 + (TG)n Simple_repeat Simple_repeat 1 180 0 188 210 12 0 chr9 109163835 109163916 -8698711 + (TG)n Simple_repeat Simple_repeat 1 82 0 318 158 39 8 chr9 109163949 109164076 -8698551 + (TG)n Simple_repeat Simple_repeat 1 131 0 231 258 151 11 chr9 109165102 109165195 -8697432 + L2 LINE L2 3206 3311 -2 1962 104 3 52 chr9 109165202 109165510 -8697117 + AluSx SINE Alu 1 293 -19 316 211 0 0 chr9 109165515 109165567 -8697060 - L1MC4 LINE L1 -1339 6703 6652 368 206 130 48 chr9 109166486 109166725 -8695902 - L2 LINE L2 -336 2977 2715 404 297 36 22 chr9 109166809 109166947 -8695680 - MIR SINE MIR -119 143 4 2214 116 3 0 chr9 109167375 109167686 -8694941 + AluSx SINE Alu 1 312 0 3789 154 43 7 chr9 109167712 109168453 -8694174 + L1MB3 LINE L1 5401 6168 -15 1620 143 75 10 chr9 109168496 109168789 -8693838 - AluJo SINE Alu 0 312 1 386 362 46 0 chr9 109168867 109169019 -8693608 + MIR SINE MIR 85 243 -19 191 250 94 0 chr9 109169111 109169175 -8693452 - MIR SINE MIR -58 150 81 272 297 10 94 chr9 109169254 109169370 -8693257 - MLT1J2 LTR MaLR 0 450 357 2291 99 0 0 chr9 109169370 109169673 -8692954 - AluSx SINE Alu -9 303 1 272 297 10 94 chr9 109169673 109169758 -8692869 - MLT1J2 LTR MaLR -93 357 266 1908 100 3 90 chr9 109170013 109170176 -8692451 - AluSx SINE Alu -19 293 170 294 29 0 0 chr9 109170176 109170211 -8692416 + (TG)n Simple_repeat Simple_repeat 2 36 0 1908 100 3 90 chr9 109170211 109170368 -8692259 - AluSx SINE Alu -142 170 1 373 309 42 18 chr9 109170418 109170586 -8692041 - L1MC/D LINE L1 -2037 5771 5600 2264 89 0 0 chr9 109171173 109171464 -8691163 + AluSg1 SINE Alu 1 291 -18 421 296 31 37 chr9 109172632 109172794 -8689833 + MIR SINE MIR 14 174 -88 792 103 0 17 chr9 109173552 109173668 -8688959 - AluJb SINE Alu -7 305 192 191 107 0 0 chr9 109173740 109173768 -8688859 - MIR SINE MIR -118 144 117 180 111 0 0 chr9 109173893 109173920 -8688707 + (TA)n Simple_repeat Simple_repeat 1 27 0 265 202 11 53 chr9 109174430 109174618 -8688009 + GA-rich Low_complexity Low_complexity 1 180 0 312 270 0 30 chr9 109174626 109174726 -8687901 + G-rich Low_complexity Low_complexity 4 100 0 22 0 0 0 chr9 109174825 109174847 -8687780 + AT_rich Low_complexity Low_complexity 1 22 0 202 265 8 61 chr9 109174916 109175048 -8687579 + CT-rich Low_complexity Low_complexity 4 128 0 213 244 0 0 chr9 109175459 109175504 -8687123 + (CAAT)n Simple_repeat Simple_repeat 2 46 0 232 319 43 35 chr9 109175512 109175653 -8686974 + MIR3 SINE MIR 5 146 -62 432 0 0 0 chr9 109176589 109176637 -8685990 + (CA)n Simple_repeat Simple_repeat 1 48 0 935 112 0 8 chr9 109176668 109176802 -8685825 - FLAM_C SINE Alu 0 133 1 431 293 29 14 chr9 109177176 109177316 -8685311 - MIR SINE MIR -108 154 13 361 183 240 10 chr9 109177682 109177786 -8684841 + MIR3 SINE MIR 35 162 -46 1975 91 51 0 chr9 109177786 109178060 -8684567 + AluSp SINE Alu 12 299 -14 201 295 86 50 chr9 109178128 109178267 -8684360 - L2 LINE L2 -1 3271 3128 411 300 13 27 chr9 109178305 109178455 -8684172 - MIR SINE MIR -17 245 98 834 183 0 0 chr9 109178467 109178604 -8684023 - FRAM SINE Alu -39 137 1 452 245 87 22 chr9 109178769 109178953 -8683674 - MLT1F LTR MaLR -6 536 341 507 259 38 8 chr9 109179056 109179187 -8683440 - MLT1G LTR MaLR -455 135 1 363 254 92 7 chr9 109179218 109179360 -8683267 + MER103 DNA DNA 1 154 -12 2169 115 3 10 chr9 109179536 109179850 -8682777 + AluSx SINE Alu 1 312 0 366 199 11 10 chr9 109180315 109180412 -8682215 + MIR SINE MIR 101 197 -63 249 245 137 0 chr9 109180892 109180994 -8681633 + MIR SINE MIR 70 185 -77 2227 113 0 0 chr9 109181202 109181503 -8681124 - AluSx SINE Alu -11 301 1 437 282 202 4 chr9 109181989 109182251 -8680376 + L2 LINE L2 2917 3230 -42 396 316 103 0 chr9 109182423 109182559 -8680068 + MIR SINE MIR 113 262 0 2321 100 0 3 chr9 109182727 109183038 -8679589 - AluSg SINE Alu 0 310 1 201 265 18 18 chr9 109183238 109183309 -8679318 + MIR SINE MIR 90 143 -65 246 254 49 0 chr9 109183609 109183731 -8678896 - L1ME4a LINE L1 -2 6119 5992 2339 91 0 0 chr9 109183749 109184058 -8678569 - AluSx SINE Alu -3 309 1 768 220 0 0 chr9 109184264 109184487 -8678140 + (TG)n Simple_repeat Simple_repeat 1 223 0 229 261 0 0 chr9 109184488 109184534 -8678093 + (CGTG)n Simple_repeat Simple_repeat 4 49 0 2090 110 13 0 chr9 109184893 109185194 -8677433 + AluSq SINE Alu 1 305 -8 188 309 48 48 chr9 109185203 109185287 -8677340 - MIR SINE MIR -97 165 82 315 247 36 75 chr9 109186005 109186157 -8676470 - L1MC4 LINE L1 -1338 6984 1918 313 247 37 25 chr9 109186099 109186180 -8676447 + L1MCa LINE L1 1995 2076 -4350 * 1776 171 3 13 chr9 109186183 109186301 -8676326 + AluJo SINE Alu 6 124 -188 272 25 50 0 chr9 109186301 109186341 -8676286 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 1776 171 3 13 chr9 109186341 109186531 -8676096 + AluJo SINE Alu 124 311 -1 2002 138 0 10 chr9 109186734 109187045 -8675582 + AluSx SINE Alu 1 308 -4 230 211 44 67 chr9 109187231 109187321 -8675306 - L2 LINE L2 -42 3230 3143 2341 77 0 0 chr9 109187349 109187647 -8674980 + AluY SINE Alu 1 298 -13 995 152 36 0 chr9 109187787 109187952 -8674675 + AluJb SINE Alu 138 308 -4 983 101 0 0 chr9 109188529 109188658 -8673969 - AluSq/x SINE Alu -184 129 1 241 94 0 0 chr9 109188707 109188739 -8673888 + Alu SINE Alu 1 32 -270 1498 91 5 0 chr9 109188744 109188942 -8673685 + AluSg/x SINE Alu 103 301 -9 227 368 35 35 chr9 109188945 109189263 -8673364 + L1MCa LINE L1 2534 2854 -3572 1978 126 3 10 chr9 109189263 109189557 -8673070 - AluSx SINE Alu -20 292 1 227 368 35 35 chr9 109189557 109189871 -8672756 + L1MCa LINE L1 2853 3166 -3260 1028 318 75 49 chr9 109189900 109190414 -8672213 + L1MCa LINE L1 3222 3721 -2705 1822 146 0 55 chr9 109190414 109190744 -8671883 + AluJb SINE Alu 1 312 0 1028 318 75 49 chr9 109190744 109190891 -8671736 + L1MCa LINE L1 3721 3863 -2563 1790 128 30 14 chr9 109190891 109191188 -8671439 + AluSx SINE Alu 1 302 -10 1028 318 75 49 chr9 109191188 109191286 -8671341 + L1MCa LINE L1 3863 4038 -2388 876 272 135 11 chr9 109191580 109191944 -8670683 + MLT1I LTR MaLR 1 409 0 1922 82 44 7 chr9 109192009 109192301 -8670326 + AluSc SINE Alu 1 302 0 328 346 46 7 chr9 109192301 109192584 -8670043 + L1MCa LINE L1 4306 4599 -1827 2018 125 0 3 chr9 109192754 109193050 -8669577 + AluSp SINE Alu 1 295 -18 1684 192 22 0 chr9 109193176 109193489 -8669138 - 7SLRNA srpRNA srpRNA 0 320 1 292 318 89 3 chr9 109193552 109193779 -8668848 - L1MEc LINE L1 -771 1805 1575 245 274 21 32 chr9 109193860 109193955 -8668672 + MIR SINE MIR 13 106 -156 523 249 88 121 chr9 109193958 109194057 -8668570 - MLT1H LTR MaLR -76 473 372 962 318 27 143 chr9 109194057 109194123 -8668504 - MLT1B LTR MaLR 0 390 318 1788 146 0 17 chr9 109194123 109194445 -8668182 + AluJb SINE Alu 2 318 0 962 318 27 143 chr9 109194445 109194581 -8668046 - MLT1B LTR MaLR -72 318 168 2250 84 0 13 chr9 109194581 109194889 -8667738 - AluY SINE Alu -7 304 1 962 318 27 143 chr9 109194889 109195013 -8667614 - MLT1B LTR MaLR -222 168 122 2065 92 0 3 chr9 109195013 109195296 -8667331 + AluY SINE Alu 22 303 -8 962 318 27 143 chr9 109195296 109195406 -8667221 - MLT1B LTR MaLR -268 122 1 523 249 88 121 chr9 109195406 109195504 -8667123 - MLT1H LTR MaLR -177 372 272 1760 175 0 16 chr9 109195504 109195813 -8666814 - AluJo SINE Alu -8 304 1 523 249 88 121 chr9 109195813 109196035 -8666592 - MLT1H LTR MaLR -277 272 67 2231 114 0 0 chr9 109196046 109196353 -8666274 - AluSg SINE Alu -3 307 1 1840 170 3 3 chr9 109196355 109196655 -8665972 - AluJb SINE Alu -12 300 1 311 280 0 34 chr9 109196708 109196775 -8665852 + MIR SINE MIR 97 160 -102 1883 147 10 10 chr9 109196775 109197082 -8665545 + AluJb SINE Alu 1 307 -5 311 280 0 34 chr9 109197082 109197132 -8665495 + MIR SINE MIR 160 210 -52 945 170 0 0 chr9 109197292 109197445 -8665182 - AluJo SINE Alu -159 153 1 838 268 29 73 chr9 109197448 109197627 -8665000 - L1MEc LINE L1 -4881 1324 1139 1781 158 0 37 chr9 109197627 109197950 -8664677 - AluJo SINE Alu -1 311 1 838 268 29 73 chr9 109197950 109198138 -8664489 - L1MEc LINE L1 -5066 1139 990 1881 158 0 10 chr9 109198138 109198442 -8664185 - AluSx SINE Alu 0 312 12 838 268 29 73 chr9 109198442 109198660 -8663967 - L1MEc LINE L1 -5215 990 764 225 337 37 32 chr9 109198872 109199059 -8663568 + L1ME4a LINE L1 4861 5048 -1098 447 286 52 32 chr9 109199152 109199470 -8663157 + L1ME4a LINE L1 5177 5504 -743 592 143 0 0 chr9 109199501 109199585 -8663042 - AluJ/FLAM SINE Alu -225 87 4 2059 112 0 3 chr9 109199635 109199942 -8662685 - AluSq SINE Alu 0 306 1 1852 159 0 7 chr9 109199946 109200248 -8662379 - AluJo SINE Alu -12 300 1 737 273 74 9 chr9 109200314 109200545 -8662082 + MLT1C LTR MaLR 222 467 0 424 242 156 26 chr9 109200561 109200792 -8661835 + L1ME4a LINE L1 5563 5823 -298 387 238 106 33 chr9 109200839 109200990 -8661637 - MIR SINE MIR -51 211 50 238 214 56 34 chr9 109201160 109201249 -8661378 + L1ME4a LINE L1 5957 6047 -74 222 239 67 104 chr9 109202435 109202569 -8660058 + L2 LINE L2 3144 3272 0 206 355 6 44 chr9 109202624 109202807 -8659820 + (CGTG)n Simple_repeat Simple_repeat 2 177 0 1041 143 6 23 chr9 109202937 109203112 -8659515 - AluJb SINE Alu -24 288 117 23 0 0 0 chr9 109203151 109203174 -8659453 + GC_rich Low_complexity Low_complexity 1 23 0 2101 118 0 0 chr9 109203530 109203852 -8658775 + AluSx SINE Alu 1 322 0 868 125 7 7 chr9 109203869 109204005 -8658622 - AluJb SINE Alu -176 136 1 406 260 98 8 chr9 109204191 109204314 -8658313 + MIR SINE MIR 119 252 -10 246 333 20 10 chr9 109204967 109205066 -8657561 + MIR SINE MIR 49 148 -60 2124 132 3 0 chr9 109205103 109205414 -8657213 - AluSx SINE Alu 0 312 1 204 267 0 0 chr9 109206865 109206910 -8655717 + (CG)n Simple_repeat Simple_repeat 2 46 0 316 269 60 19 chr9 109207419 109207547 -8655080 + MIR SINE MIR 41 171 -37 340 262 56 40 chr9 109207784 109207910 -8654717 + MIR SINE MIR 19 146 -62 374 259 102 71 chr9 109208669 109208866 -8653761 - MLT1K LTR MaLR 0 588 386 219 278 42 28 chr9 109208984 109209056 -8653571 - L2 LINE L2 -186 3086 3014 2164 108 7 0 chr9 109209426 109209723 -8652904 + AluSq SINE Alu 1 299 -14 443 248 166 13 chr9 109210231 109210388 -8652239 + MER91A DNA MER1_type 1 181 -15 2301 88 3 0 chr9 109210450 109210747 -8651880 - AluSx SINE Alu -14 298 1 3283 232 54 11 chr9 109210799 109211811 -8650816 - L1MD2 LINE L1 -227 6132 5059 1500 150 6 118 chr9 109211811 109212150 -8650477 - AluJb SINE Alu -11 301 1 3283 232 54 11 chr9 109212150 109212315 -8650312 - L1MD2 LINE L1 -1300 5059 4903 288 0 0 0 chr9 109212454 109212486 -8650141 + (TG)n Simple_repeat Simple_repeat 1 32 0 1899 147 0 0 chr9 109212486 109212765 -8649862 - AluSx SINE Alu -33 279 1 1520 144 140 8 chr9 109212768 109213032 -8649595 - AluJb SINE Alu -2 300 2 244 271 43 0 chr9 109213209 109213279 -8649348 - MER91 DNA MER1_type 0 140 68 1617 183 0 11 chr9 109213356 109213635 -8648992 + AluJo SINE Alu 11 286 -26 180 0 0 0 chr9 109213638 109213658 -8648969 + (TAA)n Simple_repeat Simple_repeat 2 21 0 396 258 53 53 chr9 109213926 109214077 -8648550 - MIR SINE MIR -70 192 42 207 216 149 14 chr9 109215805 109215879 -8646748 - MER5A DNA MER1_type -102 87 4 352 279 27 0 chr9 109215942 109216053 -8646574 + Zaphod DNA AcHobo 3918 4031 0 405 307 83 28 chr9 109216128 109216346 -8646281 + L2 LINE L2 2811 3040 -232 287 361 34 29 chr9 109216452 109216657 -8645970 + MIR SINE MIR 29 234 -28 2174 122 0 0 chr9 109216671 109217010 -8645617 - AluSx SINE Alu 0 339 1 330 301 127 51 chr9 109218158 109218394 -8644233 + L1MEd LINE L1 958 1211 -4908 432 228 34 1 chr9 109218398 109219297 -8643330 + (TGGA)n Simple_repeat Simple_repeat 1 928 0 363 174 52 7 chr9 109219345 109219500 -8643127 + (TGGA)n Simple_repeat Simple_repeat 2 163 0 477 218 24 3 chr9 109219555 109219849 -8642778 + (TGGA)n Simple_repeat Simple_repeat 1 300 0 507 227 23 2 chr9 109219925 109220363 -8642264 + (TGGA)n Simple_repeat Simple_repeat 1 447 0 279 210 48 6 chr9 109220389 109220556 -8642071 + (TGGA)n Simple_repeat Simple_repeat 2 175 0 402 197 26 21 chr9 109220569 109220805 -8641822 + (TGGA)n Simple_repeat Simple_repeat 1 237 0 526 289 90 25 chr9 109220849 109221050 -8641577 + MIR SINE MIR 39 252 -10 278 194 14 0 chr9 109222533 109222605 -8640022 + (CA)n Simple_repeat Simple_repeat 2 74 0 223 191 0 0 chr9 109223311 109223353 -8639274 - MIR SINE MIR -61 147 106 476 191 14 14 chr9 109224721 109224862 -8637765 + CT-rich Low_complexity Low_complexity 3 143 0 58 68 0 0 chr9 109224946 109225019 -8637608 + AT_rich Low_complexity Low_complexity 1 73 0 349 148 25 12 chr9 109225224 109225305 -8637322 + CT-rich Low_complexity Low_complexity 3 84 0 242 153 7 73 chr9 109225552 109225702 -8636925 + CT-rich Low_complexity Low_complexity 1 140 0 204 135 0 0 chr9 109225967 109226004 -8636623 + (TCC)n Simple_repeat Simple_repeat 2 38 0 208 266 16 31 chr9 109226165 109226229 -8636398 + CT-rich Low_complexity Low_complexity 5 67 0 181 155 52 69 chr9 109226884 109226942 -8635685 - MIR SINE MIR -86 122 66 207 276 53 13 chr9 109228086 109228162 -8634465 + MIR SINE MIR 35 113 -149 242 273 15 0 chr9 109228572 109228638 -8633989 + MIR SINE MIR 92 158 -104 381 279 68 21 chr9 109229199 109229389 -8633238 + L2 LINE L2 3094 3292 -21 189 74 0 0 chr9 109229399 109229426 -8633201 + (TGAG)n Simple_repeat Simple_repeat 4 30 0 198 297 11 11 chr9 109229884 109229975 -8632652 + L2 LINE L2 2920 3010 -303 668 211 93 6 chr9 109230285 109230446 -8632181 + MIR SINE MIR 20 194 -68 812 252 83 47 chr9 109230848 109231166 -8631461 + L2 LINE L2 2382 2687 -627 1707 152 3 3 chr9 109231166 109231449 -8631178 + AluJo SINE Alu 1 283 -29 297 68 0 0 chr9 109231449 109231493 -8631134 + (CA)n Simple_repeat Simple_repeat 2 45 0 812 252 83 47 chr9 109231493 109231534 -8631093 + L2 LINE L2 2686 2755 -559 541 294 145 30 chr9 109231508 109231909 -8630718 + L2 LINE L2 2867 3313 0 * 252 289 0 12 chr9 109232919 109233002 -8629625 + (CACCAT)n Simple_repeat Simple_repeat 2 83 0 856 271 88 35 chr9 109233003 109233042 -8629585 + MLT1C LTR MaLR 1 36 -431 2249 103 0 3 chr9 109233042 109233352 -8629275 + AluSq SINE Alu 1 309 -4 856 271 88 35 chr9 109233352 109233689 -8628938 + MLT1C LTR MaLR 36 397 -70 907 125 0 27 chr9 109233723 109233907 -8628720 + (CACCAT)n Simple_repeat Simple_repeat 1 179 0 209 224 17 0 chr9 109233908 109233966 -8628661 + (CAT)n Simple_repeat Simple_repeat 1 59 0 700 248 60 49 chr9 109233970 109234374 -8628253 - MLT1D LTR MaLR 0 390 1 234 0 0 0 chr9 109234498 109234524 -8628103 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1950 129 0 0 chr9 109234524 109234804 -8627823 - AluSx SINE Alu -32 280 1 264 299 94 26 chr9 109234813 109234930 -8627697 - MIR SINE MIR -110 152 28 409 337 35 45 chr9 109234992 109235194 -8627433 + MIR3 SINE MIR 2 201 -7 309 19 0 57 chr9 109235400 109235453 -8627174 + (GGGTG)n Simple_repeat Simple_repeat 3 52 0 1992 108 14 0 chr9 109235716 109235994 -8626633 - AluSx SINE Alu -11 301 20 22 56 0 0 chr9 109236561 109236597 -8626030 + GC_rich Low_complexity Low_complexity 1 36 0 221 159 0 23 chr9 109236641 109236685 -8625942 + C-rich Low_complexity Low_complexity 6 48 0 24 0 0 0 chr9 109237088 109237112 -8625515 + GC_rich Low_complexity Low_complexity 1 24 0 198 371 34 8 chr9 109238681 109238859 -8623768 + MIR SINE MIR 17 241 -21 426 265 43 21 chr9 109238975 109239116 -8623511 + MIR SINE MIR 21 163 -62 * 644 301 15 5 chr9 109239103 109239302 -8623325 - MIR SINE MIR 0 262 62 415 279 16 16 chr9 109239838 109239960 -8622667 + MIR SINE MIR 43 164 -98 510 236 136 26 chr9 109240058 109240249 -8622378 - MIR SINE MIR -43 219 8 277 61 20 20 chr9 109240586 109240635 -8621992 + (TCCA)n Simple_repeat Simple_repeat 2 50 0 203 167 0 0 chr9 109240666 109240702 -8621925 + (TCCA)n Simple_repeat Simple_repeat 1 36 0 206 125 0 25 chr9 109240702 109240742 -8621885 + (TTCC)n Simple_repeat Simple_repeat 2 40 0 215 323 54 31 chr9 109240879 109241009 -8621618 + MIR SINE MIR 16 148 -60 1295 198 57 33 chr9 109241009 109241307 -8621320 - MLT1A1 LTR MaLR 0 365 57 2202 118 0 0 chr9 109241307 109241613 -8621014 - AluSx SINE Alu -4 308 3 1295 198 57 33 chr9 109241613 109241647 -8620980 - MLT1A1 LTR MaLR -308 57 25 203 214 82 51 chr9 109241857 109241955 -8620672 + MIR3 SINE MIR 1 101 -107 2179 87 7 17 chr9 109242153 109242453 -8620174 + AluSp SINE Alu 2 298 -15 2286 105 0 0 chr9 109242465 109242769 -8619858 + AluSq SINE Alu 1 304 -9 181 300 60 0 chr9 109242787 109242837 -8619790 - L2 LINE L2 -33 3239 3187 564 191 116 20 chr9 109242851 109242998 -8619629 + MER117 DNA MER1_type 1 161 -36 415 264 36 22 chr9 109244093 109244276 -8618351 + MIR3 SINE MIR 2 245 -17 290 329 106 11 chr9 109244324 109244751 -8617876 + L2 LINE L2 2791 3271 -1 434 318 0 0 chr9 109245375 109245485 -8617142 - MIR3 SINE MIR -15 193 84 236 150 0 0 chr9 109245618 109245658 -8616969 + MIR SINE MIR 83 122 -140 267 312 56 35 chr9 109245893 109246037 -8616590 + MIR SINE MIR 33 179 -61 210 325 167 0 chr9 109246081 109246195 -8616432 - MIR3 SINE MIR -35 173 41 188 83 0 56 chr9 109246901 109246937 -8615690 + (TTTTC)n Simple_repeat Simple_repeat 4 37 0 2107 135 0 6 chr9 109246939 109247251 -8615376 - AluSx SINE Alu -1 311 2 392 282 23 115 chr9 109247296 109247601 -8615026 - L2 LINE L2 0 3272 2996 292 213 16 0 chr9 109247606 109247667 -8614960 + MIR SINE MIR 82 143 -65 870 142 0 0 chr9 109247738 109247872 -8614755 + AluSg/x SINE Alu 167 300 -10 587 188 138 0 chr9 109248408 109248546 -8614081 - MIR SINE MIR -14 248 92 217 250 0 14 chr9 109248605 109248677 -8613950 + L2 LINE L2 2892 2962 -310 389 342 117 31 chr9 109248724 109248946 -8613681 + MIR SINE MIR 7 247 -15 766 196 0 0 chr9 109248973 109249106 -8613521 + FLAM_A SINE Alu 1 133 0 273 159 0 0 chr9 109249366 109249410 -8613217 - L2 LINE L2 -5 3308 3265 1841 143 0 54 chr9 109249810 109249941 -8612686 + AluJb SINE Alu 1 138 -174 1622 151 0 8 chr9 109249941 109250192 -8612435 - AluSx SINE Alu -23 289 41 1841 143 0 54 chr9 109250192 109250374 -8612253 + AluJb SINE Alu 138 297 -15 441 15 45 0 chr9 109251638 109251704 -8610923 + (TG)n Simple_repeat Simple_repeat 1 69 0 317 24 24 0 chr9 109251703 109251745 -8610882 + (GA)n Simple_repeat Simple_repeat 1 43 0 * 212 370 28 0 chr9 109252157 109252265 -8610362 - L2 LINE L2 -1 3271 3161 246 217 0 33 chr9 109252355 109252415 -8610212 - MIR SINE MIR -141 121 64 354 107 0 0 chr9 109252659 109252715 -8609912 + (TTCA)n Simple_repeat Simple_repeat 1 56 0 499 192 42 33 chr9 109252752 109252872 -8609755 - MER45A DNA AcHobo 0 178 58 1223 239 40 15 chr9 109252976 109253302 -8609325 + MER46C DNA MER2_type 3 336 -2 2248 84 0 7 chr9 109253579 109253877 -8608750 - AluY SINE Alu -15 296 1 439 346 164 24 chr9 109253947 109254288 -8608339 - L1ME4a LINE L1 -54 6067 5679 373 348 50 28 chr9 109255071 109255252 -8607375 - MIR SINE MIR -77 185 1 195 167 0 0 chr9 109255265 109255307 -8607320 + (CTGGGG)n Simple_repeat Simple_repeat 3 44 0 1701 96 0 0 chr9 109256575 109256795 -8605832 + AluSx SINE Alu 53 272 -40 1482 161 16 0 chr9 109256795 109257037 -8605590 + AluJb SINE Alu 55 301 -11 657 266 75 49 chr9 109257372 109257778 -8604849 - MLT1J LTR MaLR 0 511 54 766 195 25 80 chr9 109258191 109258350 -8604277 - MER53 DNA DNA 0 189 41 2035 113 0 3 chr9 109258350 109258674 -8603953 - AluSc SINE Alu 0 323 1 766 195 25 80 chr9 109258674 109258713 -8603914 - MER53 DNA DNA -148 41 1 406 282 9 18 chr9 109258908 109259042 -8603585 + MIR SINE MIR 20 156 -63 210 231 31 15 chr9 109260219 109260349 -8602278 + (CGTG)n Simple_repeat Simple_repeat 4 135 0 289 297 94 39 chr9 109261105 109261233 -8601394 - MIR3 SINE MIR -50 158 24 183 330 88 0 chr9 109261307 109261398 -8601229 + MIR SINE MIR 25 123 -139 180 351 158 9 chr9 109261671 109261785 -8600842 + MIR SINE MIR 113 243 -19 789 22 0 0 chr9 109261806 109261921 -8600706 - AluY SINE Alu 0 306 192 216 0 0 0 chr9 109262144 109262168 -8600459 + (TTG)n Simple_repeat Simple_repeat 2 25 0 733 119 0 0 chr9 109262239 109262348 -8600279 - L1MA5 LINE L1 -2 6298 6190 1508 157 99 0 chr9 109262388 109262650 -8599977 - AluJo SINE Alu -18 294 7 347 249 3 0 chr9 109262683 109262833 -8599794 - L1PA16 LINE L1 -341 5825 5694 2038 141 3 3 chr9 109263133 109263611 -8599016 - AluSx SINE Alu 0 478 1 346 244 106 32 chr9 109264236 109264359 -8598268 + MIR SINE MIR 48 179 -83 2131 98 31 0 chr9 109264712 109264998 -8597629 - AluSp SINE Alu -18 295 1 337 262 99 41 chr9 109265098 109265298 -8597329 + MIR SINE MIR 24 250 -12 443 206 28 9 chr9 109265376 109265483 -8597144 + MLT1I LTR MaLR 69 177 -232 1134 109 0 0 chr9 109265483 109265630 -8596997 + FRAM SINE Alu 19 165 -11 2355 81 0 37 chr9 109265630 109265952 -8596675 + AluSq SINE Alu 1 310 -3 750 181 40 114 chr9 109265960 109266187 -8596440 + MLT1C LTR MaLR 180 466 -1 216 171 0 24 chr9 109266640 109266681 -8595946 - L2 LINE L2 -74 3239 3200 1263 137 10 29 chr9 109266876 109267081 -8595546 - AluJb SINE Alu 0 312 112 2330 77 7 0 chr9 109267311 109267609 -8595018 - AluSp SINE Alu -13 300 1 2320 96 0 6 chr9 109268052 109268366 -8594261 - AluSx SINE Alu 0 312 1 1914 148 3 3 chr9 109268367 109268657 -8593970 - AluJo SINE Alu -17 295 6 593 27 13 0 chr9 109268665 109268690 -8593937 + (TTCC)n Simple_repeat Simple_repeat 1 101 0 593 27 13 0 chr9 109268690 109268765 -8593862 + (TTCC)n Simple_repeat Simple_repeat 4 79 0 1964 148 26 0 chr9 109268771 109269075 -8593552 - AluSx SINE Alu 0 312 1 1308 180 39 42 chr9 109269139 109269450 -8593177 - MLT1B LTR MaLR 0 390 81 927 120 0 0 chr9 109269450 109269583 -8593044 + AluSq/x SINE Alu 1 133 -180 1394 114 8 72 chr9 109269619 109269881 -8592746 + AluSx SINE Alu 59 303 -9 431 161 11 11 chr9 109269884 109269971 -8592656 - MLT1B LTR MaLR -303 87 1 677 264 52 41 chr9 109270073 109270418 -8592209 - MLT1H1 LTR MaLR -233 357 2 229 300 11 11 chr9 109270587 109270677 -8591950 + MLT1I LTR MaLR 88 177 -232 563 193 50 8 chr9 109271105 109271224 -8591403 - MIR SINE MIR -131 131 8 1803 141 3 26 chr9 109271263 109271440 -8591187 - AluJb SINE Alu -3 309 140 2243 105 3 6 chr9 109271440 109271753 -8590874 - AluSx SINE Alu 0 312 1 1803 141 3 26 chr9 109271753 109271879 -8590748 - AluJb SINE Alu -172 140 13 449 320 6 19 chr9 109272133 109272289 -8590338 - MIR SINE MIR -7 255 102 246 207 98 12 chr9 109272291 109272373 -8590254 - MER5C DNA MER1_type -2 322 234 537 224 52 0 chr9 109272396 109272512 -8590115 - MER5C DNA MER1_type -200 124 3 298 253 0 35 chr9 109272512 109272595 -8590032 - MIR SINE MIR -170 92 13 2216 118 0 0 chr9 109273002 109273308 -8589319 - AluSg SINE Alu -4 306 1 1893 163 0 10 chr9 109273309 109273615 -8589012 - AluJb SINE Alu -9 303 1 940 128 0 0 chr9 109273868 109274001 -8588626 + AluSq/x SINE Alu 1 133 -180 327 229 60 12 chr9 109274004 109274087 -8588540 + L1ME4a LINE L1 6029 6115 -6 211 327 203 24 chr9 109275263 109275593 -8587034 - L2 LINE L2 -474 2840 2452 827 160 0 14 chr9 109275660 109275804 -8586823 - FLAM_C SINE Alu -1 142 1 272 347 53 7 chr9 109276234 109276384 -8586243 + L2 LINE L2 2931 3087 -185 357 158 58 18 chr9 109276441 109276612 -8586015 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 406 294 0 33 chr9 109276613 109276793 -8585834 + G-rich Low_complexity Low_complexity 6 179 0 * 447 184 58 20 chr9 109276770 109277191 -8585436 + (TGGA)n Simple_repeat Simple_repeat 1 437 0 627 136 0 42 chr9 109277301 109277631 -8584996 + (TGG)n Simple_repeat Simple_repeat 1 316 0 603 291 17 51 chr9 109278646 109278883 -8583744 + MIR SINE MIR 27 255 -7 218 176 20 0 chr9 109278888 109278939 -8583688 + C-rich Low_complexity Low_complexity 1 52 0 741 192 32 0 chr9 109279542 109279799 -8582828 + (TGGA)n Simple_repeat Simple_repeat 1 265 0 545 206 11 11 chr9 109279832 109280012 -8582615 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 921 172 0 0 chr9 109280042 109280222 -8582405 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 869 162 6 0 chr9 109280252 109280425 -8582202 + (TGGA)n Simple_repeat Simple_repeat 1 174 0 245 296 8 0 chr9 109280459 109280591 -8582036 + (TGGA)n Simple_repeat Simple_repeat 1 133 0 357 360 20 7 chr9 109280762 109280915 -8581712 + MIR SINE MIR 49 203 -59 1074 206 137 8 chr9 109280916 109281044 -8581583 + AluY SINE Alu 1 111 -189 216 0 0 0 chr9 109281044 109281068 -8581559 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1074 206 137 8 chr9 109281068 109281207 -8581420 + AluY SINE Alu 111 300 0 279 282 27 0 chr9 109281485 109281569 -8581058 + MIR SINE MIR 61 147 -61 195 247 79 34 chr9 109286905 109286994 -8575633 - L2 LINE L2 -2232 1082 990 354 235 0 26 chr9 109290110 109290263 -8572364 + CT-rich Low_complexity Low_complexity 2 150 0 550 250 27 153 chr9 109291058 109291208 -8571419 + L1ME1 LINE L1 5521 5688 -478 1945 130 0 70 chr9 109291208 109291338 -8571289 + AluJb SINE Alu 6 143 -169 2276 66 14 0 chr9 109291338 109291626 -8571001 + AluY SINE Alu 1 292 -19 1945 130 0 70 chr9 109291626 109291645 -8570982 + AluJb SINE Alu 143 162 -150 2270 108 0 0 chr9 109291645 109291951 -8570676 + AluSq SINE Alu 2 307 -6 1945 130 0 70 chr9 109291951 109292130 -8570497 + AluJb SINE Alu 162 312 0 550 250 27 153 chr9 109292130 109292558 -8570069 + L1ME1 LINE L1 5688 5967 -199 1615 168 72 7 chr9 109292558 109292729 -8569898 - AluJo SINE Alu -1 311 112 234 81 0 0 chr9 109292729 109292766 -8569861 + (TATG)n Simple_repeat Simple_repeat 2 38 0 1615 168 72 7 chr9 109292766 109292886 -8569741 - AluJo SINE Alu -200 112 1 550 250 27 153 chr9 109292886 109293058 -8569569 + L1ME1 LINE L1 5967 6159 -7 214 390 165 0 chr9 109293069 109293233 -8569394 + MIR SINE MIR 55 245 -17 208 252 154 32 chr9 109293330 109293453 -8569174 - L2 LINE L2 -26 3246 3109 204 287 129 10 chr9 109293450 109293551 -8569076 - L2 LINE L2 -339 2975 2863 * 257 335 82 13 chr9 109293823 109293981 -8568646 + L2 LINE L2 3103 3271 -1 184 283 22 0 chr9 109293999 109294045 -8568582 - L2 LINE L2 -88 3225 3179 2090 122 3 13 chr9 109294256 109294568 -8568059 + AluSx SINE Alu 1 309 -3 198 330 23 34 chr9 109295313 109295401 -8567226 - MIR SINE MIR -106 156 70 * 327 251 116 26 chr9 109295399 109295537 -8567090 + MIR SINE MIR 8 158 -61 200 250 181 0 chr9 109295865 109295937 -8566690 - L2 LINE L2 -10 3262 3178 301 292 85 15 chr9 109296016 109296146 -8566481 - L2 LINE L2 -214 3058 2920 549 330 64 13 chr9 109296215 109296425 -8566202 - L2 LINE L2 -556 2758 2533 2092 127 0 16 chr9 109296425 109296741 -8565886 + AluJo SINE Alu 1 311 -1 549 330 64 13 chr9 109296741 109296766 -8565861 - L2 LINE L2 -781 2533 2511 300 301 166 19 chr9 109297748 109298067 -8564560 + L2 LINE L2 2838 3203 -69 192 200 0 0 chr9 109298194 109298239 -8564388 + (TG)n Simple_repeat Simple_repeat 1 45 0 336 282 0 58 chr9 109298267 109298455 -8564172 + (TG)n Simple_repeat Simple_repeat 1 177 0 248 182 0 159 chr9 109298502 109298716 -8563911 + (TG)n Simple_repeat Simple_repeat 1 180 0 333 224 0 104 chr9 109298748 109298949 -8563678 + (TG)n Simple_repeat Simple_repeat 1 180 0 313 310 148 7 chr9 109299373 109299515 -8563112 + MIR SINE MIR 84 245 -17 233 286 8 67 chr9 109299875 109299994 -8562633 - MIR SINE MIR -71 137 25 1741 110 4 8 chr9 109300113 109300384 -8562243 + AluSx SINE Alu 39 308 0 1752 171 26 3 chr9 109300511 109300815 -8561812 - AluJb SINE Alu -1 311 1 276 271 0 29 chr9 109300827 109300897 -8561730 + MIR SINE MIR 92 159 -103 898 261 13 25 chr9 109301471 109301709 -8560918 + MIR SINE MIR 20 254 -8 353 308 43 0 chr9 109302230 109302347 -8560280 + L2 LINE L2 3151 3272 0 185 338 0 14 chr9 109302714 109302788 -8559839 + L2 LINE L2 3200 3272 0 596 127 136 9 chr9 109302808 109302918 -8559709 + FLAM_C SINE Alu 10 133 -10 2089 128 7 0 chr9 109302931 109303235 -8559392 + AluSx SINE Alu 1 306 -6 486 321 64 28 chr9 109303403 109303621 -8559006 - MIR SINE MIR -4 258 33 667 281 88 52 chr9 109304890 109305366 -8557261 + MLT1J LTR MaLR 12 504 -7 1263 131 45 119 chr9 109305680 109305781 -8556846 + AluJo SINE Alu 1 108 -204 2249 72 17 0 chr9 109305781 109306071 -8556556 - AluSq SINE Alu -18 295 1 1263 131 45 119 chr9 109306071 109306112 -8556515 + AluJo SINE Alu 108 150 -162 216 0 0 0 chr9 109306112 109306136 -8556491 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2001 123 35 0 chr9 109306138 109306422 -8556205 - AluSx SINE Alu -18 294 1 1263 131 45 119 chr9 109306422 109306612 -8556015 + AluJo SINE Alu 151 312 0 202 283 0 0 chr9 109306718 109306764 -8555863 - MIR SINE MIR -99 163 118 234 311 109 8 chr9 109306942 109307061 -8555566 + MIR3 SINE MIR 77 207 -1 393 306 7 48 chr9 109307377 109307524 -8555103 + MIR SINE MIR 84 224 -38 2017 139 0 0 chr9 109307550 109307876 -8554751 - AluSx SINE Alu 0 312 3 618 164 77 0 chr9 109308047 109308151 -8554476 + FLAM_C SINE Alu 2 113 -30 1979 153 0 16 chr9 109308169 109308483 -8554144 + AluJb SINE Alu 1 309 -3 346 210 10 10 chr9 109308484 109308584 -8554043 + GA-rich Low_complexity Low_complexity 4 103 0 448 299 171 24 chr9 109308747 109309075 -8553552 - L3 LINE CR1 -11 1566 1191 474 313 24 27 chr9 109309512 109309758 -8552869 + MIR SINE MIR 8 250 -12 2073 119 20 0 chr9 109309764 109310057 -8552570 - AluSx SINE Alu -13 299 1 418 267 30 15 chr9 109310196 109310331 -8552296 - MER5A DNA MER1_type -2 187 51 215 375 31 0 chr9 109310364 109310460 -8552167 - L2 LINE L2 -17 3255 3157 325 245 130 70 chr9 109310764 109310897 -8551730 + MIR SINE MIR 15 165 -97 752 222 80 0 chr9 109310897 109311059 -8551568 + MER69A DNA AcHobo 1 175 -2 325 245 130 70 chr9 109311059 109311125 -8551502 + MIR SINE MIR 165 226 -36 312 268 31 63 chr9 109311687 109311814 -8550813 - MIR SINE MIR -127 135 13 222 255 0 0 chr9 109312462 109312509 -8550118 + G-rich Low_complexity Low_complexity 1 47 0 22 35 0 0 chr9 109312509 109312538 -8550089 + GC_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr9 109312625 109312646 -8549981 + GC_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr9 109312773 109312798 -8549829 + GC_rich Low_complexity Low_complexity 1 25 0 206 260 60 0 chr9 109313426 109313476 -8549151 + MIR SINE MIR 210 262 0 241 351 11 11 chr9 109313973 109314067 -8548560 + MIR SINE MIR 166 259 -3 270 279 44 0 chr9 109314266 109314334 -8548293 + MIR SINE MIR 80 150 -112 181 273 0 0 chr9 109314395 109314439 -8548188 + MIR SINE MIR 59 102 -106 619 278 62 19 chr9 109314488 109314697 -8547930 - MIR SINE MIR -27 235 18 2028 118 10 16 chr9 109314707 109315072 -8547555 + AluJb SINE Alu 1 363 0 21 36 0 0 chr9 109315079 109315107 -8547520 + AT_rich Low_complexity Low_complexity 1 28 0 248 309 154 20 chr9 109315402 109315648 -8546979 - L2 LINE L2 -347 2967 2689 318 26 0 0 chr9 109315761 109315800 -8546827 + (TG)n Simple_repeat Simple_repeat 2 40 0 264 127 254 0 chr9 109317119 109317174 -8545453 + L2 LINE L2 3245 3313 0 204 329 26 13 chr9 109317519 109317595 -8545032 + MIR SINE MIR 116 192 -70 332 311 74 7 chr9 109317644 109317779 -8544848 + MIR3 SINE MIR 3 146 -62 300 283 0 9 chr9 109317865 109317978 -8544649 + (CA)n Simple_repeat Simple_repeat 2 113 0 234 219 9 57 chr9 109318329 109318434 -8544193 + (CCCCG)n Simple_repeat Simple_repeat 4 103 0 245 253 33 0 chr9 109318662 109318748 -8543879 + MIR SINE MIR 53 136 -72 255 226 16 16 chr9 109318785 109318847 -8543780 - MIR SINE MIR -66 142 81 187 268 61 37 chr9 109318968 109319050 -8543577 + MIR SINE MIR 84 167 -95 2411 47 7 0 chr9 109319145 109319441 -8543186 - AluY SINE Alu -11 300 3 254 261 189 20 chr9 109319970 109320123 -8542504 + L2 LINE L2 2837 3015 -257 226 240 23 39 chr9 109320162 109320291 -8542336 + (CA)n Simple_repeat Simple_repeat 1 127 0 228 190 0 127 chr9 109320755 109320834 -8541793 + MIR SINE MIR 92 160 -102 2274 94 0 0 chr9 109321714 109322011 -8540616 - AluSx SINE Alu -15 297 1 293 272 124 47 chr9 109322071 109322240 -8540387 + MIR SINE MIR 33 214 -48 362 234 7 104 chr9 109322577 109322659 -8539968 - MIR3 SINE MIR -15 193 131 2301 86 3 3 chr9 109322659 109322962 -8539665 + AluSp SINE Alu 1 303 -10 362 234 7 104 chr9 109322962 109323033 -8539594 - MIR3 SINE MIR -77 131 55 898 252 36 9 chr9 109323054 109323276 -8539351 + MIR SINE MIR 34 261 -1 288 317 40 0 chr9 109323336 109323437 -8539190 - L2 LINE L2 -46 3226 3122 210 71 0 0 chr9 109323604 109323632 -8538995 + (GGAGA)n Simple_repeat Simple_repeat 4 31 0 1796 224 58 60 chr9 109324105 109324556 -8538071 + MER115 DNA AcHobo 117 568 -125 2383 68 3 0 chr9 109324556 109324852 -8537775 - AluSp SINE Alu -15 298 2 1796 224 58 60 chr9 109324852 109324953 -8537674 + MER115 DNA AcHobo 568 668 -25 424 303 111 24 chr9 109325321 109325529 -8537098 + MIR SINE MIR 15 240 -22 306 271 65 58 chr9 109325552 109325707 -8536920 - MIR SINE MIR -99 163 8 317 237 113 10 chr9 109326117 109326214 -8536413 + MIR3 SINE MIR 99 205 -3 25 51 0 0 chr9 109326536 109326575 -8536052 + GC_rich Low_complexity Low_complexity 1 39 0 261 139 0 0 chr9 109326847 109326890 -8535737 + (GGAGA)n Simple_repeat Simple_repeat 2 44 0 188 189 33 22 chr9 109326921 109327011 -8535616 + GA-rich Low_complexity Low_complexity 1 91 0 204 59 0 59 chr9 109327175 109327209 -8535418 + (CGGGGG)n Simple_repeat Simple_repeat 4 35 0 247 314 41 72 chr9 109327473 109327667 -8534960 - L2 LINE L2 -57 3215 3028 606 207 0 0 chr9 109328569 109328748 -8533879 + (TG)n Simple_repeat Simple_repeat 1 179 0 1157 163 0 5 chr9 109329409 109329593 -8533034 - AluSx SINE Alu -129 183 1 336 295 20 67 chr9 109329594 109329743 -8532884 - MIR SINE MIR -102 160 19 214 229 0 0 chr9 109330546 109330594 -8532033 + L3b LINE CR1 1338 1385 -198 825 254 38 42 chr9 109330775 109331011 -8531616 - MIR SINE MIR 0 262 28 333 389 77 5 chr9 109331460 109331681 -8530946 - L2 LINE L2 -181 3091 2855 218 190 138 0 chr9 109331895 109331953 -8530674 - L2 LINE L2 -275 2997 2932 1596 130 27 104 chr9 109331953 109332156 -8530471 - AluYb8 SINE Alu -6 312 144 2356 66 0 22 chr9 109332156 109332473 -8530154 - AluY SINE Alu -1 310 1 1596 130 27 104 chr9 109332473 109332607 -8530020 - AluYb8 SINE Alu -174 144 1 1088 194 0 0 chr9 109332887 109333062 -8529565 - FAM SINE Alu 0 175 1 181 323 16 16 chr9 109333159 109333221 -8529406 - L3 LINE CR1 -907 670 609 365 227 42 50 chr9 109333644 109333721 -8528906 - MER46C DNA MER2_type -1 337 260 2194 100 0 22 chr9 109333721 109334040 -8528587 + AluSx SINE Alu 1 312 0 365 227 42 50 chr9 109334040 109334081 -8528546 - MER46C DNA MER2_type -78 260 220 326 279 13 0 chr9 109334133 109334212 -8528415 + MIR SINE MIR 111 190 -72 920 244 194 18 chr9 109334239 109334579 -8528048 + L2 LINE L2 2912 3311 -2 294 296 51 51 chr9 109334958 109335188 -8527439 - MIR SINE MIR -19 243 13 194 129 0 0 chr9 109335395 109335426 -8527201 + MIR SINE MIR 121 151 -111 241 117 24 29 chr9 109335458 109335514 -8527113 + L1MC/D LINE L1 5857 5908 -334 1820 144 0 0 chr9 109335518 109335781 -8526846 - AluJb SINE Alu -6 306 44 628 196 139 23 chr9 109335781 109335954 -8526673 + L1MD2 LINE L1 6112 6304 -55 526 163 163 8 chr9 109335944 109336067 -8526560 - FLAM_C SINE Alu 0 143 2 * 546 159 177 9 chr9 109335955 109336068 -8526559 - AluJo/FLAM SINE Alu -170 132 1 2389 64 27 0 chr9 109336074 109336370 -8526257 - AluY SINE Alu -7 304 1 275 216 0 0 chr9 109336430 109336481 -8526146 + MER66B LTR ERV1 295 345 -141 21 36 0 0 chr9 109336482 109336510 -8526117 + AT_rich Low_complexity Low_complexity 1 28 0 1776 136 0 0 chr9 109336955 109337197 -8525430 + AluSx SINE Alu 10 251 -61 242 317 40 20 chr9 109337324 109337425 -8525202 + MIR3 SINE MIR 79 181 -27 350 355 41 0 chr9 109337615 109337692 -8524935 - L2 LINE L2 -6 3266 3181 2112 151 3 0 chr9 109337692 109338003 -8524624 + AluSx SINE Alu 1 312 0 350 355 41 0 chr9 109338003 109338046 -8524581 - L2 LINE L2 -91 3181 3141 2531 65 3 3 chr9 109338096 109338403 -8524224 + AluY SINE Alu 1 307 -4 1865 243 80 45 chr9 109339055 109339239 -8523388 + L1ME3A LINE L1 5231 5407 -763 1770 170 16 63 chr9 109339239 109339564 -8523063 - MLT1A1 LTR MaLR 0 365 59 2174 131 3 0 chr9 109339564 109339862 -8522765 - AluSg SINE Alu -10 300 2 1770 170 16 63 chr9 109339862 109339919 -8522708 - MLT1A1 LTR MaLR -306 59 1 1865 243 80 45 chr9 109339919 109340189 -8522438 + L1ME3A LINE L1 5407 5666 -504 1813 181 27 0 chr9 109340189 109340487 -8522140 + AluJb SINE Alu 2 307 -5 1865 243 80 45 chr9 109340487 109340775 -8521852 + L1ME3A LINE L1 5666 6002 -168 2161 121 0 0 chr9 109341364 109341675 -8520952 - AluSx SINE Alu 0 312 2 214 222 16 32 chr9 109341963 109342026 -8520601 - MIR SINE MIR -24 238 177 1171 261 71 67 chr9 109342056 109342393 -8520234 - L1MEc LINE L1 -4080 2181 1847 2263 126 3 0 chr9 109342393 109342702 -8519925 + AluSp SINE Alu 1 310 -3 1171 261 71 67 chr9 109342702 109343382 -8519245 - L1MEc LINE L1 -4414 1847 1171 6833 186 131 18 chr9 109343382 109344958 -8517669 + MER52A LTR ERV1 1 1755 0 1171 261 71 67 chr9 109344958 109345030 -8517597 - L1MEc LINE L1 -5090 1171 1101 1736 194 21 0 chr9 109345030 109345313 -8517314 - AluJo SINE Alu -21 291 3 1171 261 71 67 chr9 109345313 109345401 -8517226 - L1MEc LINE L1 -5160 1101 876 1690 154 48 4 chr9 109345439 109345711 -8516916 - AluSx SINE Alu -22 290 7 842 167 12 30 chr9 109345718 109345886 -8516741 + MLT1C LTR MaLR 1 165 -302 2039 152 7 0 chr9 109345888 109346185 -8516442 - AluJb SINE Alu -13 299 1 1952 165 0 7 chr9 109346215 109346518 -8516109 + AluSx SINE Alu 1 301 -11 943 115 15 0 chr9 109346524 109346654 -8515973 + AluJb SINE Alu 1 132 -180 24 53 0 0 chr9 109346681 109346719 -8515908 + AT_rich Low_complexity Low_complexity 1 38 0 1206 241 11 4 chr9 109346736 109347002 -8515625 + MLT1C LTR MaLR 200 467 0 449 170 0 11 chr9 109347087 109347181 -8515446 + CT-rich Low_complexity Low_complexity 3 95 0 1562 156 0 39 chr9 109347185 109347298 -8515329 - AluJo SINE Alu -66 246 130 2412 103 0 13 chr9 109347298 109347609 -8515018 - AluSg SINE Alu -3 307 1 1562 156 0 39 chr9 109347609 109347751 -8514876 - AluJo SINE Alu -182 130 1 390 257 87 10 chr9 109347760 109347966 -8514661 - L1MEc LINE L1 -5294 776 555 350 205 178 49 chr9 109348209 109348394 -8514233 - L1MEc LINE L1 -5608 462 254 2298 100 10 0 chr9 109348405 109348715 -8513912 - AluSp SINE Alu 0 313 1 245 244 89 0 chr9 109348720 109348810 -8513817 - L1MEc LINE L1 -5972 98 1 334 289 26 9 chr9 109348933 109349047 -8513580 + MIR SINE MIR 32 147 -115 2208 117 10 0 chr9 109349120 109349420 -8513207 + AluSq SINE Alu 1 303 -10 335 246 16 49 chr9 109349885 109349975 -8512652 + MIR3 SINE MIR 65 152 -56 2064 132 47 0 chr9 109349975 109350271 -8512356 - AluSx SINE Alu 0 312 3 335 246 16 49 chr9 109350271 109350302 -8512325 + MIR3 SINE MIR 152 182 -26 219 386 35 0 chr9 109350305 109350419 -8512208 + MIR SINE MIR 30 147 -61 308 281 138 20 chr9 109350789 109350992 -8511635 + L2 LINE L2 3018 3244 -28 2396 103 0 0 chr9 109351067 109351369 -8511258 - AluSx SINE Alu -10 302 1 2027 102 0 0 chr9 109351829 109352084 -8510543 - AluSx SINE Alu -13 299 45 183 80 0 0 chr9 109352691 109352716 -8509911 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 192 280 200 0 chr9 109352726 109352801 -8509826 - L2 LINE L2 -46 3226 3137 267 206 0 15 chr9 109353085 109353153 -8509474 - MER33 DNA MER1_type -22 341 275 1734 133 0 4 chr9 109353153 109353393 -8509234 + AluSx SINE Alu 1 239 -73 421 56 268 0 chr9 109353446 109353517 -8509110 + AluSc SINE Alu 211 300 -9 844 185 32 5 chr9 109353519 109353708 -8508919 - MER33 DNA MER1_type -87 237 44 217 247 0 62 chr9 109353729 109353810 -8508817 + MIR SINE MIR 56 131 -77 789 156 94 0 chr9 109354120 109354280 -8508347 - L1MC1 LINE L1 -13 6320 6146 192 268 80 80 chr9 109354600 109354738 -8507889 - L2 LINE L2 -7 3306 3169 1336 131 0 0 chr9 109355129 109355312 -8507315 - AluSg/x SINE Alu -4 306 124 1776 261 59 78 chr9 109355359 109356219 -8506408 + L1MEd LINE L1 2 845 -5274 2131 138 0 13 chr9 109356221 109356526 -8506101 + AluJb SINE Alu 1 301 -11 2082 124 0 0 chr9 109356530 109356813 -8505814 + AluSx SINE Alu 30 312 0 2376 269 143 32 chr9 109356866 109357778 -8504849 + HAL1 LINE L1 4 1076 -1431 2140 120 0 42 chr9 109357778 109358086 -8504541 + AluSx SINE Alu 1 295 -17 2376 269 143 32 chr9 109358086 109358346 -8504281 + HAL1 LINE L1 1076 1306 -1201 239 160 0 0 chr9 109358374 109358424 -8504203 - Alu SINE Alu 0 301 252 1086 103 0 39 chr9 109358444 109358599 -8504028 - AluSq/x SINE Alu -164 149 1 1777 149 7 7 chr9 109358621 109358922 -8503705 + AluJo SINE Alu 1 301 0 226 305 37 0 chr9 109358923 109359005 -8503622 + HAL1 LINE L1 1319 1403 -1104 1233 120 0 6 chr9 109359009 109359176 -8503451 - AluSg/x SINE Alu -14 296 131 2425 269 82 46 chr9 109359189 109359783 -8502844 + HAL1 LINE L1 1390 1961 -546 2591 52 0 13 chr9 109359783 109360091 -8502536 + AluY SINE Alu 1 304 -7 2425 269 82 46 chr9 109360091 109360336 -8502291 + HAL1 LINE L1 1961 2196 -311 2397 81 0 0 chr9 109360336 109360662 -8501965 - AluSp SINE Alu 0 327 2 2425 269 82 46 chr9 109360662 109360710 -8501917 + HAL1 LINE L1 2196 2241 -266 222 37 0 0 chr9 109360710 109360737 -8501890 + (CA)n Simple_repeat Simple_repeat 2 28 0 2425 269 82 46 chr9 109360737 109360907 -8501720 + HAL1 LINE L1 2241 2488 -19 1840 192 89 104 chr9 109361403 109361669 -8500958 + L1M4 LINE L1 4030 4299 -1847 2146 146 0 0 chr9 109361669 109361970 -8500657 + AluSx SINE Alu 1 301 -11 1840 192 89 104 chr9 109361970 109362538 -8500089 + L1M4 LINE L1 4299 4851 -1295 1919 137 23 17 chr9 109362542 109362841 -8499786 - AluSx SINE Alu -11 301 1 847 156 7 0 chr9 109362843 109362978 -8499649 - AluSq/x SINE Alu -176 136 1 1551 218 28 32 chr9 109362979 109363339 -8499288 + L1M4 LINE L1 4847 5206 -940 2395 113 0 0 chr9 109363339 109363649 -8498978 + AluSx SINE Alu 1 310 -2 1551 218 28 32 chr9 109363649 109363752 -8498875 + L1M4 LINE L1 5206 5308 -838 1904 169 10 10 chr9 109363752 109364059 -8498568 + AluJb SINE Alu 1 307 -5 2052 144 10 0 chr9 109364063 109364354 -8498273 - AluSq SINE Alu -19 294 1 208 274 0 0 chr9 109365802 109365853 -8496774 + (CG)n Simple_repeat Simple_repeat 1 51 0 316 269 60 19 chr9 109366351 109366479 -8496148 + MIR SINE MIR 41 171 -37 331 262 56 40 chr9 109366716 109366842 -8495785 + MIR SINE MIR 19 146 -62 356 255 109 65 chr9 109367601 109367785 -8494842 - MLT1K LTR MaLR 0 588 397 210 278 42 28 chr9 109367916 109367988 -8494639 - L2 LINE L2 -186 3086 3014 2297 108 7 0 chr9 109368358 109368655 -8493972 + AluSq SINE Alu 1 299 -14 424 248 166 13 chr9 109369163 109369320 -8493307 + MER91A DNA MER1_type 1 181 -15 2445 88 3 0 chr9 109369382 109369679 -8492948 - AluSx SINE Alu -14 298 1 3264 226 55 12 chr9 109369731 109370743 -8491884 - L1MD2 LINE L1 -227 6132 5059 1623 150 6 118 chr9 109370743 109371082 -8491545 - AluJb SINE Alu -11 301 1 3264 226 55 12 chr9 109371082 109371247 -8491380 - L1MD2 LINE L1 -1300 5059 4903 288 0 0 0 chr9 109371386 109371418 -8491209 + (TG)n Simple_repeat Simple_repeat 1 32 0 2026 147 0 0 chr9 109371418 109371697 -8490930 - AluSx SINE Alu -33 279 1 1411 144 140 8 chr9 109371700 109371964 -8490663 - AluJb SINE Alu -2 300 2 242 271 43 0 chr9 109372141 109372211 -8490416 + MER91 DNA MER1_type 1 73 -67 1729 183 0 11 chr9 109372288 109372567 -8490060 + AluJo SINE Alu 11 286 -26 180 0 0 0 chr9 109372570 109372590 -8490037 + (TAA)n Simple_repeat Simple_repeat 2 21 0 392 258 53 53 chr9 109372858 109373009 -8489618 - MIR SINE MIR -70 192 42 186 139 23 70 chr9 109374737 109374780 -8487847 + MER5A DNA MER1_type 114 154 -35 330 279 27 0 chr9 109374874 109374985 -8487642 + Zaphod DNA AcHobo 3918 4031 0 389 307 83 28 chr9 109375060 109375278 -8487349 + L2 LINE L2 2811 3040 -232 264 361 34 29 chr9 109375384 109375589 -8487038 + MIR SINE MIR 29 234 -28 2302 122 0 0 chr9 109375603 109375942 -8486685 - AluSx SINE Alu 0 339 1 312 288 131 55 chr9 109377090 109377326 -8485301 + L1MEd LINE L1 958 1211 -4908 432 209 35 0 chr9 109377330 109377502 -8485125 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 383 230 34 0 chr9 109377513 109377839 -8484788 + (TGGA)n Simple_repeat Simple_repeat 1 337 0 425 235 29 0 chr9 109377886 109378229 -8484398 + (TGGA)n Simple_repeat Simple_repeat 1 353 0 363 174 52 7 chr9 109378277 109378432 -8484195 + (TGGA)n Simple_repeat Simple_repeat 2 163 0 477 193 28 6 chr9 109378487 109378663 -8483964 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 348 249 22 2 chr9 109378725 109379144 -8483483 + (TGGA)n Simple_repeat Simple_repeat 1 427 0 252 212 0 0 chr9 109379204 109379270 -8483357 + (TGGA)n Simple_repeat Simple_repeat 4 69 0 462 262 21 3 chr9 109379345 109379680 -8482947 + (TGGA)n Simple_repeat Simple_repeat 1 341 0 837 135 27 14 chr9 109380260 109380408 -8482219 + AluSg/x SINE Alu 154 303 -7 * 856 121 8 8 chr9 109380407 109380531 -8482096 - AluJo/FLAM SINE Alu -186 126 3 2521 77 3 0 chr9 109380772 109381082 -8481545 - AluSp SINE Alu -2 311 1 1113 232 47 95 chr9 109381087 109381427 -8481200 - L1ME3A LINE L1 -5 6165 5810 1626 200 35 3 chr9 109381427 109381717 -8480910 - AluJb SINE Alu -13 299 1 361 98 0 0 chr9 109381721 109381782 -8480845 - L1MA1 LINE L1 0 6302 6242 1113 232 47 95 chr9 109381782 109381797 -8480830 - L1ME3A LINE L1 -363 5807 5793 2321 106 0 16 chr9 109381797 109381970 -8480657 - AluSx SINE Alu -6 306 139 2310 99 0 3 chr9 109381970 109382274 -8480353 - AluSg SINE Alu -7 303 1 2321 106 0 16 chr9 109382274 109382411 -8480216 - AluSx SINE Alu -173 139 1 1113 232 47 95 chr9 109382411 109382514 -8480113 - L1ME3A LINE L1 -377 5793 5723 3053 159 33 24 chr9 109382515 109383064 -8479563 + MER39B LTR ERV1 1 544 -109 1897 117 85 0 chr9 109383064 109383347 -8479280 - AluSx SINE Alu -5 307 1 2365 87 7 0 chr9 109383347 109383645 -8478982 - AluSc SINE Alu -8 301 1 3053 159 33 24 chr9 109383645 109383674 -8478953 + MER39B LTR ERV1 543 585 -68 1789 130 0 0 chr9 109383678 109383944 -8478683 - AluSx SINE Alu 0 309 44 819 120 0 0 chr9 109383946 109384054 -8478573 - AluJb SINE Alu -204 108 1 273 146 12 134 chr9 109384054 109384136 -8478491 - L1M4 LINE L1 -2290 3856 3785 738 214 16 22 chr9 109384144 109384326 -8478301 - L1ME3A LINE L1 -669 5497 5317 866 132 0 0 chr9 109384341 109384462 -8478165 + AluSq/x SINE Alu 1 121 -191 626 305 9 4 chr9 109384683 109384909 -8477718 - AluJo SINE Alu -84 228 2 275 169 0 0 chr9 109384914 109384973 -8477654 - L1MA1 LINE L1 0 6302 6244 1403 162 5 0 chr9 109385016 109385232 -8477395 - AluSx SINE Alu -95 217 1 896 123 0 0 chr9 109385285 109385421 -8477206 + AluJb SINE Alu 169 304 0 555 297 39 43 chr9 109385446 109385992 -8476635 + L1MEd LINE L1 975 1607 -883 1500 216 4 0 chr9 109385992 109386260 -8476367 + AluJo SINE Alu 1 269 -43 555 297 39 43 chr9 109386260 109386271 -8476356 + L1MEd LINE L1 1607 1617 -873 2370 97 0 0 chr9 109386296 109386605 -8476022 - AluSg SINE Alu -1 309 1 826 256 144 62 chr9 109386825 109386975 -8475652 - MLT1J LTR MaLR -9 502 366 2226 110 10 0 chr9 109386975 109387285 -8475342 - AluSq SINE Alu 0 313 1 2126 110 3 0 chr9 109387291 109387581 -8475046 - AluSq SINE Alu -22 291 1 826 256 144 62 chr9 109387581 109387887 -8474740 - MLT1J LTR MaLR -149 362 1 2195 94 7 3 chr9 109388175 109388474 -8474153 + AluSq SINE Alu 1 300 -13 472 198 45 0 chr9 109388609 109388720 -8473907 + L1M4 LINE L1 4730 4845 -1301 1861 168 0 10 chr9 109388757 109389061 -8473566 - AluJb SINE Alu -11 301 1 909 127 0 8 chr9 109389494 109389628 -8472999 + FLAM_C SINE Alu 1 133 0 21 0 0 0 chr9 109389644 109389665 -8472962 + AT_rich Low_complexity Low_complexity 1 21 0 445 255 68 41 chr9 109389746 109390189 -8472438 + L1MEd LINE L1 2877 3331 -2798 2342 63 0 13 chr9 109390249 109390536 -8472091 + AluY SINE Alu 2 286 -25 261 0 0 0 chr9 109390536 109390565 -8472062 + (CA)n Simple_repeat Simple_repeat 2 30 0 2342 63 0 13 chr9 109390565 109390578 -8472049 + AluY SINE Alu 286 298 -13 2369 91 0 0 chr9 109390638 109390947 -8471680 + AluSg SINE Alu 1 309 -1 1195 91 23 17 chr9 109390949 109391125 -8471502 + AluSg/x SINE Alu 134 310 0 2331 100 0 0 chr9 109392025 109392326 -8470301 + AluSx SINE Alu 1 301 -11 210 242 42 63 chr9 109393003 109393098 -8469529 + L2 LINE L2 3155 3247 -25 1904 110 27 50 chr9 109393622 109393921 -8468706 - AluSq SINE Alu -21 292 1 278 300 56 0 chr9 109394076 109394166 -8468461 + MIR3 SINE MIR 109 203 -5 214 333 62 0 chr9 109394179 109394260 -8468367 + MIR SINE MIR 70 155 -107 376 329 77 13 chr9 109394359 109394514 -8468113 + MIR SINE MIR 17 181 -81 526 226 48 72 chr9 109395467 109395675 -8466952 - MIR SINE MIR -44 218 16 209 209 23 0 chr9 109395883 109395926 -8466701 + GA-rich Low_complexity Low_complexity 2 45 0 1949 129 3 3 chr9 109397224 109397518 -8465109 + AluSx SINE Alu 1 294 -18 2014 122 10 0 chr9 109397535 109397823 -8464804 + AluSx SINE Alu 12 302 -10 274 330 32 0 chr9 109397857 109397951 -8464676 - L2 LINE L2 0 3313 3217 275 95 0 0 chr9 109398239 109398281 -8464346 + AluY SINE Alu 217 258 -43 272 324 0 0 chr9 109398365 109398439 -8464188 - MIR SINE MIR 0 262 189 * 554 264 74 70 chr9 109398431 109398689 -8463938 - L2 LINE L2 -1 3312 3054 1311 172 24 111 chr9 109398696 109398926 -8463701 - MLT1A1 LTR MaLR -20 345 159 2158 108 23 0 chr9 109398926 109399232 -8463395 - AluSq SINE Alu 0 313 1 1311 172 24 111 chr9 109399232 109399379 -8463248 - MLT1A1 LTR MaLR -206 159 1 247 303 40 0 chr9 109399386 109399485 -8463142 - L2 LINE L2 -240 3032 2930 320 356 0 12 chr9 109399490 109399667 -8462960 - MIR SINE MIR -67 141 12 416 282 38 0 chr9 109399714 109399845 -8462782 + MIR3 SINE MIR 2 137 -71 1149 143 17 0 chr9 109400119 109400294 -8462333 - AluJo SINE Alu -36 276 99 2302 93 3 3 chr9 109400587 109400897 -8461730 + AluSx SINE Alu 1 310 -2 352 306 9 0 chr9 109400988 109401099 -8461528 - MLT1L LTR MaLR -4 611 500 1620 166 4 0 chr9 109401398 109401651 -8460976 + AluJb SINE Alu 40 293 -19 2243 104 33 17 chr9 109401979 109402456 -8460171 + MER41A LTR ERV1 1 505 -130 1658 84 50 4 chr9 109402459 109402697 -8459930 - AluSx SINE Alu -20 292 44 348 43 0 0 chr9 109402698 109402744 -8459883 + MER41B LTR ERV1 577 622 -13 507 290 39 35 chr9 109402768 109402999 -8459628 - L2 LINE L2 -191 3122 2891 275 335 96 0 chr9 109403104 109403292 -8459335 + L1ME2 LINE L1 5788 5993 -171 333 100 0 0 chr9 109405087 109405137 -8457490 + (GGGA)n Simple_repeat Simple_repeat 1 50 0 208 291 63 25 chr9 109405568 109405647 -8456980 + MIR3 SINE MIR 99 180 -28 189 0 0 0 chr9 109405869 109405890 -8456737 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 386 56 0 83 chr9 109406306 109406327 -8456300 + MADE1 DNA Mariner 15 36 -44 1981 127 6 41 chr9 109406327 109406642 -8455985 - AluSx SINE Alu -8 304 1 386 56 0 83 chr9 109406642 109406692 -8455935 + MADE1 DNA Mariner 36 80 0 188 321 130 31 chr9 109406692 109406854 -8455773 - L2 LINE L2 -605 2709 2532 1767 77 17 0 chr9 109406874 109407108 -8455519 - AluSp SINE Alu -3 310 73 228 140 0 80 chr9 109409188 109409238 -8453389 + LTR29 LTR ERV1 137 182 -440 1083 222 147 39 chr9 109409254 109409520 -8453107 + LTR48B LTR ERV1 93 329 -315 2181 109 7 0 chr9 109409520 109409824 -8452803 - AluY SINE Alu -5 306 1 1083 222 147 39 chr9 109409824 109409994 -8452633 + LTR48B LTR ERV1 329 576 -68 2160 86 0 43 chr9 109409997 109410299 -8452328 - AluSg SINE Alu -19 291 3 360 176 14 14 chr9 109410424 109410498 -8452129 + LTR48B LTR ERV1 571 644 0 1517 131 72 62 chr9 109410592 109410883 -8451744 + AluJb SINE Alu 1 294 -18 209 272 39 58 chr9 109411404 109411507 -8451120 + MIR SINE MIR 29 129 -133 2014 123 17 3 chr9 109411538 109411839 -8450788 - AluSx SINE Alu -4 308 4 2170 114 0 3 chr9 109411857 109412163 -8450464 - AluSx SINE Alu -7 305 1 2319 86 0 0 chr9 109412459 109412751 -8449876 - AluSx SINE Alu -20 292 1 378 217 70 9 chr9 109412760 109412875 -8449752 - L1ME3A LINE L1 -6 6164 6043 197 139 0 0 chr9 109413307 109413343 -8449284 - MIR SINE MIR -69 139 104 483 352 113 15 chr9 109413536 109413925 -8448702 + L2 LINE L2 2836 3262 -10 2024 118 13 13 chr9 109413926 109414230 -8448397 + AluSx SINE Alu 1 304 -8 308 345 122 0 chr9 109414278 109414417 -8448210 - MIR3 SINE MIR -24 184 29 221 203 34 17 chr9 109414487 109414546 -8448081 + CT-rich Low_complexity Low_complexity 2 61 0 347 288 121 0 chr9 109414756 109414888 -8447739 + MIR SINE MIR 37 184 -78 260 270 110 10 chr9 109414992 109415092 -8447535 - MIR SINE MIR -118 144 35 25 51 0 0 chr9 109415195 109415234 -8447393 + GC_rich Low_complexity Low_complexity 1 39 0 220 115 0 39 chr9 109415276 109415328 -8447299 + (GGA)n Simple_repeat Simple_repeat 1 50 0 30 27 0 0 chr9 109415328 109415365 -8447262 + GC_rich Low_complexity Low_complexity 1 37 0 22 56 0 0 chr9 109415500 109415536 -8447091 + GC_rich Low_complexity Low_complexity 1 36 0 198 224 0 0 chr9 109415637 109415722 -8446905 + G-rich Low_complexity Low_complexity 6 90 0 193 180 80 0 chr9 109416020 109416070 -8446557 + MIR SINE MIR 100 153 -55 466 306 55 30 chr9 109416162 109416361 -8446266 - L2 LINE L2 -16 3297 3094 270 173 19 0 chr9 109417405 109417457 -8445170 - L2 LINE L2 0 3313 3261 210 247 258 0 chr9 109417548 109417637 -8444990 + MIR3 SINE MIR 14 125 -83 404 296 78 14 chr9 109418148 109418290 -8444337 + MIR SINE MIR 6 156 -106 1954 127 0 54 chr9 109419579 109419759 -8442868 - AluSx SINE Alu -13 299 142 1685 100 0 0 chr9 109419759 109419988 -8442639 - AluSg/x SINE Alu 0 312 84 1954 127 0 54 chr9 109419988 109420123 -8442504 - AluSx SINE Alu -170 142 1 557 122 11 0 chr9 109420272 109420361 -8442266 + MLT1B LTR MaLR 1 90 -300 597 168 99 8 chr9 109420361 109420487 -8442140 + MLT1A1 LTR MaLR 1 138 -227 1991 143 70 0 chr9 109420487 109420845 -8441782 - MSTA LTR MaLR 0 428 46 2024 101 0 4 chr9 109420845 109421121 -8441506 - AluSq SINE Alu -15 298 24 1888 118 0 0 chr9 109421221 109421484 -8441143 + AluSc SINE Alu 36 298 -11 1052 171 33 19 chr9 109421484 109421694 -8440933 + MLT1A1 LTR MaLR 150 362 -3 1455 195 45 0 chr9 109421694 109421986 -8440641 + MLT1B LTR MaLR 86 390 0 548 299 7 0 chr9 109421987 109422131 -8440496 - MIR SINE MIR -98 164 20 312 167 0 0 chr9 109422405 109422477 -8440150 + (CA)n Simple_repeat Simple_repeat 2 73 0 238 155 35 0 chr9 109422483 109422541 -8440086 + (CTCA)n Simple_repeat Simple_repeat 2 61 0 339 163 54 0 chr9 109422545 109422711 -8439916 + (CA)n Simple_repeat Simple_repeat 1 175 0 223 158 53 8 chr9 109422739 109422872 -8439755 + (CA)n Simple_repeat Simple_repeat 1 139 0 560 322 25 16 chr9 109423618 109423909 -8438718 - L2 LINE L2 -213 3059 2767 308 269 43 0 chr9 109424119 109424212 -8438415 - MIR3 SINE MIR -18 190 94 2319 96 3 0 chr9 109424245 109424557 -8438070 - AluSp SINE Alu 0 313 1 913 184 6 6 chr9 109424558 109424716 -8437911 - AluSg/x SINE Alu -18 292 135 358 236 45 11 chr9 109424719 109424808 -8437819 - L2 LINE L2 -12 3260 3169 214 232 0 36 chr9 109424842 109424898 -8437729 + GA-rich Low_complexity Low_complexity 2 55 0 353 345 68 28 chr9 109424908 109425085 -8437542 - MIR SINE MIR -1 261 78 228 67 0 0 chr9 109425642 109425672 -8436955 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 187 345 36 0 chr9 109425672 109425727 -8436900 - L2 LINE L2 -13 3300 3244 403 326 77 27 chr9 109425828 109426212 -8436415 - L2 LINE L2 -183 3089 2682 490 301 79 32 chr9 109426350 109426566 -8436061 - MIR SINE MIR -29 233 8 793 216 113 18 chr9 109426908 109427218 -8435409 - MLT1D LTR MaLR 0 467 147 1414 176 35 35 chr9 109427373 109427680 -8434947 + AluJb SINE Alu 1 307 0 316 336 21 35 chr9 109428223 109428366 -8434261 + MLT1I LTR MaLR 252 392 -17 1316 256 66 46 chr9 109428690 109429013 -8433614 + Charlie4a DNA MER1_type 1 339 -1622 2165 116 0 0 chr9 109429013 109429316 -8433311 - AluSx SINE Alu -9 303 1 1316 256 66 46 chr9 109429316 109429489 -8433138 + Charlie4a DNA MER1_type 339 507 -1 471 270 169 18 chr9 109430277 109430460 -8432167 + MIR SINE MIR 9 218 -44 234 91 0 0 chr9 109430467 109430500 -8432127 + (TTA)n Simple_repeat Simple_repeat 3 35 0 1526 260 38 2 chr9 109430540 109430963 -8431664 + MLT1J LTR MaLR 36 473 -38 286 258 57 32 chr9 109430997 109431121 -8431506 - L2 LINE L2 -64 3249 3123 253 265 14 53 chr9 109431288 109431435 -8431192 + MIR SINE MIR 23 247 -15 1752 164 38 0 chr9 109431454 109431747 -8430880 + AluJb SINE Alu 5 308 -4 257 73 0 24 chr9 109431764 109431805 -8430822 + (GGGA)n Simple_repeat Simple_repeat 4 43 0 183 365 19 19 chr9 109431881 109431988 -8430639 - L2 LINE L2 -209 3063 2957 2068 117 0 44 chr9 109432161 109432478 -8430149 - AluSx SINE Alu 0 312 10 335 329 134 47 chr9 109432608 109432973 -8429654 + L2 LINE L2 2855 3251 -21 1870 118 83 0 chr9 109433638 109433927 -8428700 + AluSq SINE Alu 1 313 0 2274 90 3 0 chr9 109434216 109434516 -8428111 + AluSp SINE Alu 1 301 -12 3661 306 17 35 chr9 109434557 109435753 -8426874 - HERVFH19I LTR ERV1 0 7719 6504 2055 128 0 3 chr9 109435753 109436058 -8426569 - AluSx SINE Alu -8 304 1 3661 306 17 35 chr9 109436058 109436633 -8425994 - HERVFH19I LTR ERV1 -1215 6504 5921 2303 89 3 0 chr9 109436633 109436936 -8425691 - AluSg SINE Alu -4 306 3 3661 306 17 35 chr9 109436936 109437612 -8425015 - HERVFH19I LTR ERV1 -1798 5921 5204 1351 154 127 12 chr9 109437614 109437867 -8424760 + AluSg1 SINE Alu 1 282 -27 183 205 0 0 chr9 109437994 109438033 -8424594 + A-rich Low_complexity Low_complexity 2 40 0 2308 76 3 3 chr9 109438135 109438436 -8424191 + AluY SINE Alu 1 301 -10 303 366 73 24 chr9 109438513 109438718 -8423909 - L1MC4a LINE L1 -1743 6065 5851 288 221 232 11 chr9 109438930 109439025 -8423602 - MIR SINE MIR -98 164 49 629 165 8 50 chr9 109439664 109439785 -8422842 + FLAM_C SINE Alu 12 127 -16 571 205 270 25 chr9 109440065 109440265 -8422362 - MIR SINE MIR 0 262 14 327 168 62 9 chr9 109440565 109440678 -8421949 + CT-rich Low_complexity Low_complexity 1 119 0 301 208 24 36 chr9 109440720 109440888 -8421739 + CT-rich Low_complexity Low_complexity 4 169 0 190 248 33 8 chr9 109440900 109441021 -8421606 + CT-rich Low_complexity Low_complexity 2 125 0 1921 124 0 17 chr9 109441059 109441350 -8421277 + AluSx SINE Alu 10 295 -17 1144 102 25 0 chr9 109441653 109441810 -8420817 + AluSg/x SINE Alu 137 297 -15 340 278 123 14 chr9 109442133 109442345 -8420282 + L2 LINE L2 2817 3051 -262 328 313 106 24 chr9 109442949 109443029 -8419598 + MIR SINE MIR 18 90 -172 2085 104 3 13 chr9 109443029 109443191 -8419436 - AluSx SINE Alu -16 296 137 2184 113 0 0 chr9 109443191 109443493 -8419134 - AluSx SINE Alu -10 302 1 2085 104 3 13 chr9 109443493 109443629 -8418998 - AluSx SINE Alu -175 137 1 328 313 106 24 chr9 109443629 109443683 -8418944 + MIR SINE MIR 90 138 -124 4068 71 22 18 chr9 109443683 109444103 -8418524 + MER41A LTR ERV1 1 418 -136 2209 100 0 0 chr9 109444103 109444392 -8418235 - AluSx SINE Alu -23 289 1 4068 71 22 18 chr9 109444392 109444403 -8418224 + MER41A LTR ERV1 418 427 -127 2263 105 0 3 chr9 109444403 109444709 -8417918 - AluSc SINE Alu -4 305 1 4068 71 22 18 chr9 109444709 109444828 -8417799 + MER41A LTR ERV1 427 554 0 328 313 106 24 chr9 109444828 109444900 -8417727 + MIR SINE MIR 138 242 -20 220 311 172 8 chr9 109444921 109445043 -8417584 + MIR SINE MIR 13 154 -108 275 300 123 4 chr9 109445141 109445306 -8417321 + MIR SINE MIR 14 192 -57 182 253 137 21 chr9 109445446 109445541 -8417086 - MIR3 SINE MIR -42 166 61 237 171 13 26 chr9 109446119 109446195 -8416432 + G-rich Low_complexity Low_complexity 2 76 0 240 205 0 41 chr9 109446362 109446458 -8416169 + L2 LINE L2 2920 3008 -264 208 176 20 39 chr9 109447126 109447177 -8415450 - MIR SINE MIR -110 152 103 2363 79 0 7 chr9 109447476 109447780 -8414847 + AluSq SINE Alu 1 302 -11 333 217 54 62 chr9 109447784 109447935 -8414692 + LTR19A LTR ERV1 342 570 -10 1494 273 53 27 chr9 109447945 109448844 -8413783 + HERVFH19I LTR ERV1 2 963 -4623 * 6555 300 10 19 chr9 109448843 109449500 -8413127 + HERVFH19I LTR ERV1 2417 3078 -4641 2418 70 0 0 chr9 109449500 109449799 -8412828 + AluY SINE Alu 1 299 -12 6555 300 10 19 chr9 109449799 109450570 -8412057 + HERVFH19I LTR ERV1 3078 3854 -3865 2436 66 3 0 chr9 109450570 109450874 -8411753 + AluSp SINE Alu 1 305 -8 6555 300 10 19 chr9 109450874 109451682 -8410945 + HERVFH19I LTR ERV1 3854 4634 -3085 1365 87 0 39 chr9 109451682 109451889 -8410738 - AluSg/x SINE Alu -11 299 101 237 65 0 0 chr9 109451953 109451984 -8410643 + (TG)n Simple_repeat Simple_repeat 2 32 0 294 29 0 0 chr9 109451994 109452029 -8410598 + (CA)n Simple_repeat Simple_repeat 2 36 0 1834 126 7 14 chr9 109452045 109452323 -8410304 - AluSq SINE Alu -37 276 1 470 343 121 21 chr9 109452324 109452712 -8409915 - L2 LINE L2 -10 3262 2836 197 139 0 0 chr9 109452905 109452941 -8409686 + MIR SINE MIR 104 139 -69 378 217 70 9 chr9 109453373 109453488 -8409139 + L1ME3A LINE L1 6043 6164 -6 2319 86 0 0 chr9 109453497 109453789 -8408838 + AluSx SINE Alu 1 292 -20 2199 111 0 3 chr9 109454085 109454391 -8408236 + AluSx SINE Alu 1 305 -7 2029 120 17 3 chr9 109454409 109454710 -8407917 + AluSx SINE Alu 4 308 -4 209 272 39 58 chr9 109454741 109454844 -8407783 - MIR SINE MIR -133 129 29 206 239 11 0 chr9 109455494 109455586 -8407041 + (TCCA)n Simple_repeat Simple_repeat 4 96 0 1987 105 3 69 chr9 109455664 109455997 -8406630 + AluY SINE Alu 1 311 0 341 289 13 27 chr9 109456155 109456304 -8406323 + (TCCA)n Simple_repeat Simple_repeat 4 150 0 418 299 104 0 chr9 109456527 109456691 -8405936 - MER117 DNA MER1_type 0 197 17 942 125 0 0 chr9 109456695 109456823 -8405804 + AluJb SINE Alu 1 128 -184 326 68 0 0 chr9 109456923 109456967 -8405660 - Alu SINE Alu -255 45 2 2109 114 3 0 chr9 109456974 109457264 -8405363 - AluSq SINE Alu -22 291 1 681 280 140 19 chr9 109457264 109457578 -8405049 - MLT1J LTR MaLR -159 352 1 2074 116 0 26 chr9 109457866 109458176 -8404451 + AluSg SINE Alu 1 302 -8 478 211 10 141 chr9 109458553 109458628 -8403999 - MER5B DNA MER1_type -4 174 91 2236 101 0 3 chr9 109458628 109458936 -8403691 + AluSc SINE Alu 1 307 -2 478 211 10 141 chr9 109458936 109459059 -8403568 - MER5B DNA MER1_type -87 91 2 1613 99 0 0 chr9 109459368 109459580 -8403047 - AluSx SINE Alu -100 212 1 251 228 11 0 chr9 109459658 109459750 -8402877 + (TGGA)n Simple_repeat Simple_repeat 4 96 0 27 0 0 0 chr9 109460606 109460633 -8401994 + GC_rich Low_complexity Low_complexity 1 27 0 446 264 16 16 chr9 109461321 109461442 -8401185 + MIR SINE MIR 110 230 -32 490 281 0 39 chr9 109461507 109461635 -8400992 + MIR SINE MIR 43 165 -97 297 239 35 61 chr9 109461795 109461920 -8400707 - MER5A DNA MER1_type -7 171 61 1782 140 7 38 chr9 109461951 109462243 -8400384 - AluJo SINE Alu -29 283 1 2182 110 0 0 chr9 109462785 109463086 -8399541 + AluSx SINE Alu 2 302 -10 416 191 60 0 chr9 109463087 109463171 -8399456 - L1MC3 LINE L1 -1059 6726 6638 1869 118 59 3 chr9 109463811 109464120 -8398507 - AluSx SINE Alu 0 312 1 741 284 55 26 chr9 109464988 109465259 -8397368 - MLT1C LTR MaLR -12 455 177 475 90 0 21 chr9 109465268 109465501 -8397126 - AluSc SINE Alu 0 309 1 490 251 35 18 chr9 109465507 109465678 -8396949 - MLT1C LTR MaLR -288 179 6 321 200 263 0 chr9 109465687 109465782 -8396845 + MIR3 SINE MIR 86 205 -3 374 319 102 0 chr9 109465871 109466028 -8396599 - MIR SINE MIR -13 249 77 302 242 45 0 chr9 109466535 109466667 -8395960 + L1M LINE L1 5265 5402 -778 243 88 0 0 chr9 109466778 109466812 -8395815 + (TG)n Simple_repeat Simple_repeat 1 34 0 401 255 57 0 chr9 109466843 109466949 -8395678 + HAL1b LINE L1 1233 1344 -4 689 123 54 0 chr9 109467470 109467802 -8394825 + (CA)n Simple_repeat Simple_repeat 1 350 0 247 166 46 34 chr9 109467820 109467995 -8394632 + (CA)n Simple_repeat Simple_repeat 1 177 0 217 339 0 23 chr9 109468338 109468438 -8394189 + C-rich Low_complexity Low_complexity 1 168 0 189 344 44 0 chr9 109469133 109469223 -8393404 + MIR3 SINE MIR 109 202 -6 346 268 141 50 chr9 109470310 109470508 -8392119 - MIR SINE MIR -8 254 39 225 310 14 0 chr9 109470553 109470624 -8392003 - L2 LINE L2 -6 3307 3236 936 119 0 0 chr9 109471447 109471573 -8391054 - FLAM_C SINE Alu -17 126 1 2223 94 0 0 chr9 109471695 109471983 -8390644 + AluSx SINE Alu 1 288 -24 1380 54 0 0 chr9 109471992 109472160 -8390467 + AluY SINE Alu 136 303 -8 302 248 26 120 chr9 109472167 109472284 -8390343 - L1MC4 LINE L1 -1339 6703 6598 2096 135 0 22 chr9 109472470 109472788 -8389839 + AluJo SINE Alu 1 311 -1 2183 134 0 0 chr9 109472807 109473113 -8389514 + AluSx SINE Alu 1 306 -6 211 234 13 7 chr9 109473377 109473455 -8389172 - MIR SINE MIR -126 82 3 221 254 36 0 chr9 109474802 109474857 -8387770 + MIR SINE MIR 95 151 -57 203 333 31 10 chr9 109475468 109475564 -8387063 - L2 LINE L2 -49 3223 3126 * 351 272 40 40 chr9 109475554 109475679 -8386948 - MIR SINE MIR -65 143 19 457 349 28 38 chr9 109475714 109475926 -8386701 - MIR SINE MIR -4 258 49 207 69 0 0 chr9 109476107 109476136 -8386491 + (TTTG)n Simple_repeat Simple_repeat 3 31 0 189 256 67 33 chr9 109476282 109476372 -8386255 + MIR SINE MIR 158 250 -12 2220 99 3 0 chr9 109476992 109477295 -8385332 + AluY SINE Alu 1 304 -7 1979 135 3 22 chr9 109477331 109477693 -8384934 + AluSp SINE Alu 1 356 0 2267 106 0 3 chr9 109477744 109478045 -8384582 + AluSp SINE Alu 1 300 -13 331 212 118 0 chr9 109478086 109478171 -8384456 + L1ME4a LINE L1 6023 6117 -4 488 303 29 25 chr9 109478900 109479089 -8383538 - MIR SINE MIR -18 190 4 2297 73 0 3 chr9 109479109 109479432 -8383195 - AluSq SINE Alu 0 322 1 231 314 93 0 chr9 109479447 109479533 -8383094 - MIR SINE MIR 0 262 169 273 119 0 0 chr9 109479534 109479576 -8383051 + (T)n Simple_repeat Simple_repeat 1 42 0 709 27 0 73 chr9 109479589 109479721 -8382906 + SVA Other Other 1285 1386 0 1564 159 29 11 chr9 109479723 109480000 -8382627 - AluJb SINE Alu -30 282 1 306 350 8 17 chr9 109480179 109480299 -8382328 + MIR3 SINE MIR 66 184 -24 250 260 14 14 chr9 109480309 109480382 -8382245 + MIR3 SINE MIR 105 177 -31 2235 90 10 0 chr9 109480540 109480830 -8381797 - AluSq SINE Alu -20 293 1 29 47 0 0 chr9 109481292 109481335 -8381292 + AT_rich Low_complexity Low_complexity 1 43 0 2210 77 0 33 chr9 109481335 109481634 -8380993 - AluSq SINE Alu -24 289 1 588 240 8 8 chr9 109481742 109481867 -8380760 + FRAM SINE Alu 7 131 -45 2255 88 0 3 chr9 109481978 109482272 -8380355 - AluSg SINE Alu -17 293 1 1957 136 10 3 chr9 109482427 109482729 -8379898 + AluSx SINE Alu 1 304 -8 429 220 50 10 chr9 109483380 109483480 -8379147 - MIR SINE MIR -85 177 74 180 176 0 0 chr9 109483538 109483572 -8379055 + CT-rich Low_complexity Low_complexity 1 34 0 2123 94 21 3 chr9 109484452 109484740 -8377887 - AluSx SINE Alu -19 293 1 280 341 131 28 chr9 109484750 109485324 -8377303 + L2 LINE L2 2462 3098 -174 2029 107 0 20 chr9 109485892 109486192 -8376435 + AluSx SINE Alu 1 294 -18 323 0 48 0 chr9 109486201 109486243 -8376384 + (GAAA)n Simple_repeat Simple_repeat 2 45 0 2230 103 0 3 chr9 109488063 109488365 -8374262 + AluSx SINE Alu 6 306 -6 308 285 71 56 chr9 109489354 109489560 -8373067 + MIR SINE MIR 2 209 -53 670 207 29 106 chr9 109489884 109489939 -8372688 - MIR SINE MIR -14 248 190 1981 130 0 7 chr9 109489939 109490253 -8372374 - AluSx SINE Alu 0 312 1 670 207 29 106 chr9 109490253 109490442 -8372185 - MIR SINE MIR -72 190 22 424 207 52 17 chr9 109490892 109491008 -8371619 - L2 LINE L2 0 3272 3153 22 0 0 0 chr9 109491176 109491198 -8371429 + AT_rich Low_complexity Low_complexity 1 22 0 212 305 66 46 chr9 109491249 109491400 -8371227 - MIR SINE MIR -81 181 28 1365 207 124 54 chr9 109492100 109492175 -8370452 - LTR48B LTR ERV1 0 644 576 2272 93 0 0 chr9 109492175 109492466 -8370161 + AluSg SINE Alu 1 291 -19 1365 207 124 54 chr9 109492466 109492639 -8369988 - LTR48B LTR ERV1 -68 576 416 2173 109 7 0 chr9 109492639 109492942 -8369685 + AluY SINE Alu 1 305 -6 1365 207 124 54 chr9 109492942 109493208 -8369419 - LTR48B LTR ERV1 -228 416 93 228 140 0 80 chr9 109493224 109493274 -8369353 - LTR29 LTR ERV1 -440 182 137 1767 77 17 0 chr9 109495353 109495587 -8367040 + AluSp SINE Alu 73 310 -3 188 321 130 31 chr9 109495607 109495769 -8366858 + L2 LINE L2 2532 2709 -605 386 56 0 83 chr9 109495769 109495819 -8366808 - MADE1 DNA Mariner 0 80 36 1981 127 6 41 chr9 109495819 109496134 -8366493 + AluSx SINE Alu 1 304 -8 386 56 0 83 chr9 109496134 109496155 -8366472 - MADE1 DNA Mariner -44 36 15 208 291 63 25 chr9 109496810 109496889 -8365738 - MIR3 SINE MIR -28 180 99 441 81 0 0 chr9 109497320 109497382 -8365245 + (TCCC)n Simple_repeat Simple_repeat 1 62 0 275 335 96 0 chr9 109499176 109499364 -8363263 - L1ME2 LINE L1 -171 5993 5788 515 286 39 35 chr9 109499469 109499700 -8362927 + L2 LINE L2 2891 3122 -191 355 43 0 0 chr9 109499705 109499752 -8362875 - MER41A LTR ERV1 -12 623 577 1658 84 50 4 chr9 109499753 109499991 -8362636 + AluSx SINE Alu 44 292 -20 2243 104 33 17 chr9 109499994 109500471 -8362156 - MER41A LTR ERV1 -130 505 1 1620 166 4 0 chr9 109500799 109501052 -8361575 - AluJb SINE Alu -19 293 40 352 306 9 0 chr9 109501351 109501462 -8361165 + MLT1L LTR MaLR 500 611 -4 2302 93 3 3 chr9 109501553 109501863 -8360764 - AluSx SINE Alu -2 310 1 1136 149 17 0 chr9 109502156 109502331 -8360296 + AluJo SINE Alu 99 276 -36 416 282 38 0 chr9 109502605 109502736 -8359891 - MIR3 SINE MIR -71 137 2 320 356 0 12 chr9 109502783 109502960 -8359667 + MIR SINE MIR 12 184 -67 247 303 40 0 chr9 109502965 109503064 -8359563 + L2 LINE L2 2930 3032 -240 1311 172 24 111 chr9 109503071 109503218 -8359409 + MLT1A1 LTR MaLR 1 159 -206 2158 108 23 0 chr9 109503218 109503524 -8359103 + AluSq SINE Alu 1 313 0 1311 172 24 111 chr9 109503524 109503754 -8358873 + MLT1A1 LTR MaLR 159 345 -20 554 264 74 70 chr9 109503761 109504019 -8358608 + L2 LINE L2 3054 3312 -1 272 324 0 0 chr9 109504011 109504085 -8358542 + MIR SINE MIR 189 262 0 * 275 95 0 0 chr9 109504169 109504211 -8358416 - AluY SINE Alu -43 258 217 274 330 32 0 chr9 109504499 109504593 -8358034 + L2 LINE L2 3217 3313 0 1946 112 11 0 chr9 109504630 109504919 -8357708 - AluSx SINE Alu 0 303 12 1949 129 3 3 chr9 109504936 109505230 -8357397 - AluSx SINE Alu -18 294 1 209 209 23 0 chr9 109506529 109506572 -8356055 + CT-rich Low_complexity Low_complexity 3 46 0 526 226 48 72 chr9 109506780 109506988 -8355639 + MIR SINE MIR 16 218 -44 376 329 77 13 chr9 109507941 109508096 -8354531 - MIR SINE MIR -81 181 17 214 333 62 0 chr9 109508195 109508276 -8354351 - MIR SINE MIR -107 155 70 278 300 56 0 chr9 109508289 109508379 -8354248 - MIR3 SINE MIR -5 203 109 1904 110 27 50 chr9 109508534 109508833 -8353794 + AluSq SINE Alu 1 292 -21 210 242 42 63 chr9 109509357 109509452 -8353175 - L2 LINE L2 -25 3247 3155 2345 96 0 0 chr9 109510129 109510430 -8352197 - AluSx SINE Alu -11 301 1 1195 91 23 17 chr9 109511330 109511506 -8351121 - AluSg/x SINE Alu 0 312 136 2353 94 0 0 chr9 109511508 109511817 -8350810 - AluSg SINE Alu -1 309 1 2342 63 0 13 chr9 109511877 109511890 -8350737 - AluY SINE Alu -13 298 286 315 0 0 0 chr9 109511890 109511925 -8350702 + (TG)n Simple_repeat Simple_repeat 2 36 0 2342 63 0 13 chr9 109511925 109512212 -8350415 - AluY SINE Alu -25 286 2 445 255 68 41 chr9 109512272 109512715 -8349912 - L1M4 LINE L1 -2798 3348 2894 21 0 0 0 chr9 109512796 109512817 -8349810 + AT_rich Low_complexity Low_complexity 1 21 0 918 119 0 8 chr9 109512833 109512967 -8349660 - FLAM_C SINE Alu 0 133 1 1976 159 0 7 chr9 109513400 109513708 -8348919 + AluJb SINE Alu 1 306 -6 2004 228 105 3 chr9 109513711 109514281 -8348346 + MLT1E1 LTR MaLR 27 654 0 2057 149 0 3 chr9 109514314 109514622 -8348005 + AluJo SINE Alu 6 312 0 327 184 56 16 chr9 109514624 109514749 -8347878 + GA-rich Low_complexity Low_complexity 3 132 0 2419 140 50 50 chr9 109514771 109515256 -8347371 + MER66B LTR ERV1 1 485 -1 355 272 136 47 chr9 109515829 109516064 -8346563 - L2 LINE L2 -453 2861 2606 2058 97 0 7 chr9 109516262 109516551 -8346076 - AluSg SINE Alu -23 287 1 847 149 0 35 chr9 109516551 109516692 -8345935 - AluSq/x SINE Alu -177 136 1 849 190 7 0 chr9 109517742 109517884 -8344743 + FRAM SINE Alu 1 140 -36 2093 95 15 0 chr9 109517920 109518194 -8344433 + AluSx SINE Alu 1 278 -34 180 135 81 0 chr9 109518228 109518265 -8344362 + MIR SINE MIR 128 167 -95 206 207 0 52 chr9 109518619 109518677 -8343950 + G-rich Low_complexity Low_complexity 6 60 0 25 75 0 0 chr9 109518974 109519027 -8343600 + GC_rich Low_complexity Low_complexity 1 53 0 223 253 0 82 chr9 109519077 109519284 -8343343 + G-rich Low_complexity Low_complexity 1 189 0 248 121 33 44 chr9 109520599 109520690 -8341937 + GA-rich Low_complexity Low_complexity 5 94 0 2200 115 3 6 chr9 109521560 109521873 -8340754 + AluSx SINE Alu 1 312 0 1367 129 0 0 chr9 109521931 109522124 -8340503 + AluSg SINE Alu 1 193 -117 186 43 0 0 chr9 109522125 109522148 -8340479 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 22 0 0 0 chr9 109522223 109522245 -8340382 + AT_rich Low_complexity Low_complexity 1 22 0 2387 208 59 25 chr9 109522887 109523438 -8339189 - L1MB3 LINE L1 -2 6181 5607 2118 120 10 0 chr9 109523438 109523739 -8338888 - AluSx SINE Alu -8 304 1 2387 208 59 25 chr9 109523739 109523784 -8338843 - L1MB3 LINE L1 -576 5607 5565 241 356 44 6 chr9 109523999 109524159 -8338468 + MIR3 SINE MIR 35 200 -8 238 340 57 0 chr9 109524817 109524923 -8337704 - MIR3 SINE MIR -86 122 11 387 0 0 0 chr9 109525946 109525989 -8336638 + (TTCA)n Simple_repeat Simple_repeat 2 44 0 1977 145 0 25 chr9 109526230 109526547 -8336080 + AluJo SINE Alu 1 309 -3 279 54 0 0 chr9 109526716 109526753 -8335874 + (CA)n Simple_repeat Simple_repeat 1 37 0 310 372 62 0 chr9 109527769 109527898 -8334729 + MIR3 SINE MIR 19 155 -53 292 320 88 14 chr9 109527918 109528065 -8334562 + MER5A DNA MER1_type 14 171 -18 201 351 11 32 chr9 109528334 109528428 -8334199 - L2 LINE L2 -10 3262 3171 271 344 128 17 chr9 109529305 109529485 -8333142 + MIR SINE MIR 15 214 -48 341 168 0 7 chr9 109529531 109529609 -8333018 - MIR SINE MIR -69 139 63 415 324 35 12 chr9 109530263 109530433 -8332194 - MIR SINE MIR -25 237 64 2322 109 0 0 chr9 109531015 109531327 -8331300 - AluSx SINE Alu 0 312 1 566 308 196 3 chr9 109531400 109531721 -8330906 - L2 LINE L2 -1 3271 2889 521 278 162 0 chr9 109532470 109532643 -8329984 - MIR SINE MIR -12 250 50 439 270 53 12 chr9 109532978 109533174 -8329453 + MIR SINE MIR 52 248 -14 2325 97 3 0 chr9 109533186 109533494 -8329133 + AluSx SINE Alu 4 312 0 203 222 202 20 chr9 109533577 109533676 -8328951 - MIR3 SINE MIR -47 161 45 2317 98 0 0 chr9 109534301 109534598 -8328029 + AluSx SINE Alu 1 297 -15 351 291 75 15 chr9 109535231 109535365 -8327262 + MIR SINE MIR 89 230 -32 2080 108 7 10 chr9 109535886 109536181 -8326446 + AluSx SINE Alu 1 294 -18 2520 49 0 0 chr9 109536517 109536823 -8325804 + AluY SINE Alu 1 306 -5 338 257 73 15 chr9 109537313 109537449 -8325178 - MLT1K LTR MaLR -48 540 397 604 101 29 7 chr9 109537458 109537597 -8325030 + (CA)n Simple_repeat Simple_repeat 2 143 0 307 190 48 25 chr9 109537631 109537727 -8324900 - MLT1K LTR MaLR -357 231 147 445 284 90 3 chr9 109537842 109537997 -8324630 - MIR SINE MIR -37 225 50 1518 144 102 21 chr9 109538422 109538707 -8323920 - AluJo SINE Alu -4 308 1 475 326 115 26 chr9 109538844 109539334 -8323293 - L2 LINE L2 0 3272 2718 1584 150 51 0 chr9 109539414 109539687 -8322940 - AluJo SINE Alu -15 297 11 656 176 0 8 chr9 109540193 109540312 -8322315 + FLAM_C SINE Alu 24 141 -2 247 220 0 0 chr9 109540644 109540694 -8321933 + L2 LINE L2 3223 3272 0 239 354 52 12 chr9 109540792 109540962 -8321665 + MIR SINE MIR 15 192 -68 952 134 0 0 chr9 109540991 109541125 -8321502 - AluJb SINE Alu -45 267 134 1787 149 3 13 chr9 109541126 109541427 -8321200 - AluJo SINE Alu -14 298 1 207 354 13 13 chr9 109541915 109541994 -8320633 + MIR SINE MIR 71 149 -59 318 301 146 8 chr9 109542284 109542407 -8320220 + MIR SINE MIR 35 174 -88 478 211 10 141 chr9 109542682 109542805 -8319822 + MER5B DNA MER1_type 2 91 -87 2236 101 0 3 chr9 109542805 109543113 -8319514 - AluSc SINE Alu -2 307 1 478 211 10 141 chr9 109543113 109543188 -8319439 + MER5B DNA MER1_type 91 174 -4 2377 79 0 3 chr9 109543565 109543868 -8318759 - AluSg SINE Alu -8 302 1 1710 211 29 7 chr9 109544001 109544107 -8318520 - MER63B DNA MER1_type -627 435 333 1783 127 17 40 chr9 109544107 109544406 -8318221 + AluSx SINE Alu 3 294 -18 1710 211 29 7 chr9 109544406 109544711 -8317916 - MER63B DNA MER1_type -729 333 15 1251 139 17 67 chr9 109544721 109544959 -8317668 - AluJb SINE Alu 0 312 87 204 40 0 0 chr9 109544992 109545017 -8317610 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1915 140 0 20 chr9 109545019 109545312 -8317315 - AluSx SINE Alu -25 287 1 5662 143 28 2 chr9 109545312 109546310 -8316317 - L1MC1 LINE L1 -8 6325 5302 2367 81 0 13 chr9 109546374 109546681 -8315946 + AluSq SINE Alu 1 303 -10 265 250 42 0 chr9 109547103 109547199 -8315428 - MER117 DNA MER1_type -97 100 1 1696 136 7 71 chr9 109547239 109547547 -8315080 - AluSx SINE Alu -24 288 1 370 293 128 32 chr9 109547670 109547858 -8314769 + MIR SINE MIR 28 233 -29 1946 133 0 3 chr9 109549355 109549649 -8312978 + AluJb SINE Alu 1 293 -19 26 30 0 0 chr9 109549652 109549685 -8312942 + AT_rich Low_complexity Low_complexity 1 33 0 473 254 12 61 chr9 109549960 109550125 -8312502 + MIR SINE MIR 23 179 -83 25 51 0 0 chr9 109550445 109550484 -8312143 + GC_rich Low_complexity Low_complexity 1 39 0 22 56 0 0 chr9 109550624 109550660 -8311967 + GC_rich Low_complexity Low_complexity 1 36 0 27 0 0 0 chr9 109551315 109551342 -8311285 + GC_rich Low_complexity Low_complexity 1 27 0 314 287 56 0 chr9 109551798 109551906 -8310721 - MIR SINE MIR -118 144 31 2019 127 0 3 chr9 109552203 109552494 -8310133 + AluSx SINE Alu 1 290 -22 297 0 0 0 chr9 109552502 109552535 -8310092 + (TG)n Simple_repeat Simple_repeat 2 34 0 203 191 24 0 chr9 109552677 109552719 -8309908 + (TTCA)n Simple_repeat Simple_repeat 3 45 0 266 330 0 21 chr9 109553024 109553121 -8309506 - MIR SINE MIR -136 126 32 1013 222 60 20 chr9 109553130 109553378 -8309249 - MIR SINE MIR -2 260 3 1943 93 48 10 chr9 109553387 109553676 -8308951 - AluSx SINE Alu -1 311 12 1824 166 0 3 chr9 109553685 109553981 -8308646 - AluJb SINE Alu -17 295 1 333 349 92 15 chr9 109554092 109554287 -8308340 + L1ME4a LINE L1 5656 5865 -256 199 317 17 0 chr9 109554402 109554462 -8308165 - MIR SINE MIR -4 258 198 557 238 41 0 chr9 109554562 109554684 -8307943 + MER91C DNA MER1_type 14 140 0 2043 94 7 7 chr9 109554880 109555166 -8307461 + AluSx SINE Alu 1 286 -26 2487 44 0 3 chr9 109555178 109555475 -8307152 + AluY SINE Alu 2 297 -14 889 219 0 25 chr9 109555480 109555681 -8306946 + MER3 DNA MER1_type 14 209 0 227 349 86 26 chr9 109555968 109556120 -8306507 + L3 LINE CR1 1238 1398 -179 313 323 62 0 chr9 109556539 109556669 -8305958 + MIR SINE MIR 30 167 -95 213 271 47 75 chr9 109557370 109557477 -8305150 - MIR SINE MIR -78 184 81 494 237 26 0 chr9 109557682 109557796 -8304831 + MIR3 SINE MIR 71 187 -21 1433 87 0 0 chr9 109558462 109558646 -8303981 - AluSg/x SINE Alu -59 253 70 2287 106 3 0 chr9 109558799 109559111 -8303516 + AluSq SINE Alu 1 313 0 214 171 0 0 chr9 109559395 109559436 -8303191 + MIR SINE MIR 212 252 -10 294 267 112 81 chr9 109560897 109561019 -8301608 + MIR SINE MIR 2 132 -130 2283 105 0 10 chr9 109561019 109561333 -8301294 + AluSx SINE Alu 1 311 -1 294 267 112 81 chr9 109561333 109561371 -8301256 + MIR SINE MIR 132 167 -95 * 595 277 54 0 chr9 109561363 109561547 -8301080 - MIR SINE MIR -67 195 2 2304 86 0 3 chr9 109561975 109562276 -8300351 - AluSc SINE Alu -9 300 1 327 303 184 21 chr9 109562580 109562814 -8299813 + L2 LINE L2 2994 3265 -7 570 296 56 96 chr9 109563532 109563907 -8298720 + L2 LINE L2 2911 3270 -2 3859 154 26 76 chr9 109564005 109564391 -8298236 + L1MB8 LINE L1 5092 5496 -682 1965 108 4 7 chr9 109564391 109564669 -8297958 + AluSx SINE Alu 1 277 -35 3859 154 26 76 chr9 109564669 109564923 -8297704 + L1MB8 LINE L1 5496 5761 -417 2230 86 0 17 chr9 109564923 109565225 -8297402 - AluSx SINE Alu -15 297 1 3859 154 26 76 chr9 109565225 109565438 -8297189 + L1MB8 LINE L1 5761 5983 -195 2161 102 0 10 chr9 109565438 109565755 -8296872 - AluSq SINE Alu 0 313 1 3859 154 26 76 chr9 109565755 109565974 -8296653 + L1MB8 LINE L1 5983 6105 -73 1637 159 32 38 chr9 109565974 109566150 -8296477 - AluJo SINE Alu 0 312 137 1970 101 65 0 chr9 109566150 109566428 -8296199 - AluSx SINE Alu -14 298 3 1637 159 32 38 chr9 109566428 109566565 -8296062 - AluJo SINE Alu -175 137 1 3859 154 26 76 chr9 109566565 109566635 -8295992 + L1MB8 LINE L1 6105 6177 -1 658 83 0 0 chr9 109566851 109566935 -8295692 - AluS SINE Alu -229 84 1 999 48 64 0 chr9 109567226 109567351 -8295276 + AluSq/x SINE Alu 1 133 -179 2148 97 27 3 chr9 109567354 109567653 -8294974 + AluSx SINE Alu 1 306 -6 1984 232 107 3 chr9 109567656 109568225 -8294402 + MLT1E1 LTR MaLR 27 654 0 2104 107 0 31 chr9 109568258 109568575 -8294052 + AluSx SINE Alu 6 312 0 229 339 31 54 chr9 109568715 109568845 -8293782 + L2 LINE L2 2653 2779 -535 2218 108 3 0 chr9 109568909 109569206 -8293421 - AluSq SINE Alu -15 298 1 1753 126 68 3 chr9 109569353 109569646 -8292981 - AluJb SINE Alu 0 312 1 257 266 35 18 chr9 109569956 109570069 -8292558 + L1ME4a LINE L1 5933 6047 -74 268 283 101 10 chr9 109570136 109570235 -8292392 + L1ME LINE L1 5548 5655 -466 2080 146 0 3 chr9 109570237 109570546 -8292081 + AluJo SINE Alu 5 312 0 327 184 56 16 chr9 109570548 109570673 -8291954 + GA-rich Low_complexity Low_complexity 3 132 0 2544 140 45 45 chr9 109570695 109571180 -8291447 + MER66B LTR ERV1 1 485 -1 355 272 136 47 chr9 109571753 109571988 -8290639 - L2 LINE L2 -453 2861 2606 2058 97 0 7 chr9 109572186 109572475 -8290152 - AluSg SINE Alu -23 287 1 847 149 0 35 chr9 109572475 109572616 -8290011 - AluSq/x SINE Alu -177 136 1 849 190 7 0 chr9 109573666 109573808 -8288819 + FRAM SINE Alu 1 140 -36 2232 78 20 3 chr9 109573844 109574139 -8288488 + AluSx SINE Alu 1 300 -12 351 212 5 69 chr9 109574686 109574875 -8287752 + (CACCC)n Simple_repeat Simple_repeat 4 180 0 190 206 16 43 chr9 109574892 109575076 -8287551 + C-rich Low_complexity Low_complexity 2 180 0 2155 91 0 14 chr9 109575705 109576015 -8286612 + AluSx SINE Alu 1 306 0 273 336 92 8 chr9 109576183 109576240 -8286387 + MIR SINE MIR 118 169 -93 1700 148 18 14 chr9 109576240 109576524 -8286103 - AluJb SINE Alu -12 300 16 273 336 92 8 chr9 109576524 109576585 -8286042 + MIR SINE MIR 169 246 -16 432 0 0 0 chr9 109577312 109577360 -8285267 + (CA)n Simple_repeat Simple_repeat 2 49 0 236 337 63 69 chr9 109577690 109577754 -8284873 + MER5B DNA MER1_type 1 64 -114 2072 120 10 0 chr9 109577754 109578046 -8284581 + AluSx SINE Alu 1 295 -17 236 337 63 69 chr9 109578046 109578156 -8284471 + MER5B DNA MER1_type 64 174 -4 234 128 0 0 chr9 109578319 109578358 -8284269 + (CA)n Simple_repeat Simple_repeat 2 40 0 276 312 138 0 chr9 109579106 109579215 -8283412 - MIR SINE MIR -127 135 12 402 294 91 20 chr9 109580041 109580238 -8282389 - L2 LINE L2 -276 3037 2827 2152 104 3 0 chr9 109580538 109580836 -8281791 + AluSq SINE Alu 14 312 -1 2044 121 3 37 chr9 109580937 109581259 -8281368 + AluSx SINE Alu 1 311 -1 2022 77 0 4 chr9 109581529 109581788 -8280839 + AluSc SINE Alu 37 294 -15 636 185 0 0 chr9 109582581 109582700 -8279927 - L1MB5 LINE L1 -272 5902 5784 2247 105 6 6 chr9 109582707 109583020 -8279607 - AluSq SINE Alu 0 313 1 1379 149 111 42 chr9 109583022 109583310 -8279317 - AluJo SINE Alu -4 308 1 759 305 74 14 chr9 109584333 109584470 -8278157 - L2 LINE L2 -1 3312 3185 2013 97 3 45 chr9 109584470 109584616 -8278011 + AluSx SINE Alu 1 129 -183 2204 113 0 0 chr9 109584616 109585094 -8277533 + AluSx SINE Alu 1 312 0 2013 97 3 45 chr9 109585094 109585256 -8277371 + AluSx SINE Alu 129 296 -16 759 305 74 14 chr9 109585256 109585637 -8276990 - L2 LINE L2 -128 3185 2768 209 214 0 0 chr9 109585740 109585792 -8276835 - MIR SINE MIR -63 145 100 901 135 0 0 chr9 109585795 109585928 -8276699 + FRAM SINE Alu 21 153 -23 2363 81 0 0 chr9 109585941 109586251 -8276376 + AluSg SINE Alu 1 310 0 210 322 67 11 chr9 109587530 109587620 -8275007 - L2 LINE L2 -47 3266 3172 228 287 11 43 chr9 109589177 109589271 -8273356 - MIR SINE MIR -80 182 92 2120 112 27 0 chr9 109592259 109592553 -8270074 - AluSx SINE Alu -10 302 1 2299 65 3 26 chr9 109592557 109592865 -8269762 - AluY SINE Alu -10 301 1 203 298 199 14 chr9 109593840 109593981 -8268646 - MIR SINE MIR -19 243 77 1645 121 0 55 chr9 109595158 109595431 -8267196 - AluJo SINE Alu -54 258 1 1522 165 20 0 chr9 109596551 109596800 -8265827 - AluJo SINE Alu -58 254 1 1196 205 0 0 chr9 109598571 109598776 -8263851 - AluJo SINE Alu -107 205 1 848 156 0 0 chr9 109599020 109599148 -8263479 - FLAM_A SINE Alu -5 128 1 853 157 0 0 chr9 109599443 109599577 -8263050 + AluJb SINE Alu 168 301 -11 713 157 0 0 chr9 109599831 109599939 -8262688 + FLAM_C SINE Alu 22 129 -14 246 303 193 0 chr9 109600268 109600377 -8262250 + L2 LINE L2 3181 3310 -3 547 277 80 21 chr9 109601312 109601500 -8261127 + MIR SINE MIR 34 232 -30 186 213 16 82 chr9 109601473 109601534 -8261093 + L2 LINE L2 3210 3266 -6 * 287 306 104 0 chr9 109602256 109602390 -8260237 - MIR SINE MIR -20 242 95 2219 99 0 3 chr9 109602935 109603237 -8259390 - AluSx SINE Alu -11 301 1 795 144 0 0 chr9 109603264 109603382 -8259245 - FLAM_C SINE Alu -14 119 2 217 342 50 68 chr9 109603820 109603981 -8258646 + MIR SINE MIR 104 261 -1 1961 137 7 0 chr9 109604039 109604339 -8258288 + AluSq SINE Alu 1 302 -11 212 217 75 85 chr9 109604773 109604879 -8257748 - L2 LINE L2 -1 3271 3167 1984 98 45 11 chr9 109605220 109605507 -8257120 - AluSc SINE Alu -10 299 3 373 343 50 20 chr9 109605562 109605760 -8256867 - MIR SINE MIR -1 261 58 2126 102 0 7 chr9 109605791 109606095 -8256532 + AluSx SINE Alu 4 305 -7 363 339 63 29 chr9 109606105 109606279 -8256348 - MIR SINE MIR -15 247 68 502 324 132 0 chr9 109606313 109606526 -8256101 + MIR SINE MIR 21 261 -1 2246 82 7 0 chr9 109607380 109607684 -8254943 - AluSx SINE Alu -6 306 1 186 43 0 0 chr9 109609440 109609463 -8253164 + (TCCCC)n Simple_repeat Simple_repeat 4 26 0 601 121 0 0 chr9 109609463 109609546 -8253081 - AluSg/x SINE Alu -17 292 210 1155 127 0 0 chr9 109609552 109609710 -8252917 - AluSq SINE Alu -155 158 1 233 254 0 17 chr9 109609711 109609770 -8252857 + MIR SINE MIR 116 173 -89 1794 162 13 3 chr9 109610257 109610565 -8252062 + AluJo SINE Alu 2 312 0 278 293 24 13 chr9 109610879 109610973 -8251654 - MIR SINE MIR -76 132 39 1492 213 24 40 chr9 109611348 109611500 -8251127 + MLT1A1 LTR MaLR 1 154 -211 2252 107 3 0 chr9 109611500 109611810 -8250817 + AluSx SINE Alu 1 311 -1 1492 213 24 40 chr9 109611810 109612028 -8250599 + MLT1A1 LTR MaLR 154 365 0 411 0 51 0 chr9 109612415 109612474 -8250153 + (CA)n Simple_repeat Simple_repeat 2 63 0 216 309 29 0 chr9 109613283 109613351 -8249276 - L2 LINE L2 -60 3212 3143 357 290 85 40 chr9 109613360 109613536 -8249091 - MIR SINE MIR 0 262 79 647 244 24 0 chr9 109613752 109613916 -8248711 + MER45A DNA AcHobo 3 170 -8 2127 116 3 25 chr9 109614207 109614525 -8248102 - AluSx SINE Alu -1 311 1 1739 105 62 69 chr9 109614699 109615005 -8247622 + AluSx SINE Alu 2 305 -7 275 250 33 33 chr9 109615741 109615833 -8246794 - L2 LINE L2 -6 3266 3175 1086 198 8 16 chr9 109615837 109616095 -8246532 - L1MB5 LINE L1 -20 6154 5899 989 118 52 0 chr9 109616096 109616249 -8246378 + AluSg/x SINE Alu 150 310 0 549 168 0 0 chr9 109616250 109616351 -8246276 - L1MB5 LINE L1 -271 5903 5803 1819 142 26 7 chr9 109616516 109616818 -8245809 - AluJo SINE Alu -4 308 1 2173 132 0 0 chr9 109617270 109617574 -8245053 - AluJb SINE Alu -8 304 1 2237 104 0 3 chr9 109617795 109618103 -8244524 - AluSg SINE Alu -2 308 2 312 227 35 47 chr9 109618670 109618842 -8243785 + C-rich Low_complexity Low_complexity 3 172 0 24 32 0 0 chr9 109618842 109618873 -8243754 + GC_rich Low_complexity Low_complexity 1 31 0 25 75 0 0 chr9 109618931 109618984 -8243643 + GC_rich Low_complexity Low_complexity 1 53 0 26 30 0 0 chr9 109619019 109619052 -8243575 + GC_rich Low_complexity Low_complexity 1 33 0 206 207 0 52 chr9 109619280 109619338 -8243289 + C-rich Low_complexity Low_complexity 6 60 0 1571 123 0 4 chr9 109620176 109620419 -8242208 - AluSg/x SINE Alu 0 310 69 905 144 0 33 chr9 109620525 109620700 -8241927 + AluSg/x SINE Alu 154 312 0 1255 280 75 21 chr9 109620827 109620964 -8241663 - L1MC4a LINE L1 -1755 6053 5925 2257 107 0 3 chr9 109620964 109621272 -8241355 + AluSx SINE Alu 1 307 -5 1255 280 75 21 chr9 109621272 109621666 -8240961 - L1MC4a LINE L1 -1883 5925 5493 219 328 0 0 chr9 109621758 109621819 -8240808 - L2 LINE L2 -3 3269 3209 387 0 0 0 chr9 109621925 109621968 -8240659 + (TG)n Simple_repeat Simple_repeat 1 43 0 953 164 111 58 chr9 109621998 109622113 -8240514 + MER20 DNA MER1_type 1 108 -111 1881 154 17 0 chr9 109622113 109622405 -8240222 - AluJo SINE Alu -15 297 1 953 164 111 58 chr9 109622405 109622497 -8240130 + MER20 DNA MER1_type 108 219 0 537 167 10 0 chr9 109623374 109623470 -8239157 + Tigger3b DNA MER2_type 24 120 -1111 802 226 51 0 chr9 109623481 109623658 -8238969 + AluJo SINE Alu 115 300 -12 1589 71 4 0 chr9 109623658 109623883 -8238744 + Tigger3b DNA MER2_type 346 571 -660 2120 106 7 0 chr9 109623885 109624186 -8238441 + AluSg SINE Alu 1 303 -7 2173 115 3 0 chr9 109624192 109624488 -8238139 + AluSx SINE Alu 3 299 -13 652 203 20 14 chr9 109624720 109624794 -8237833 + MER45A DNA AcHobo 30 102 -1479 2413 40 0 23 chr9 109624794 109625094 -8237533 - AluY SINE Alu -5 306 14 652 203 20 14 chr9 109625094 109625167 -8237460 + MER45A DNA AcHobo 102 178 0 481 295 194 11 chr9 109625186 109625453 -8237174 + L3 LINE CR1 989 1342 -235 192 77 0 0 chr9 109625453 109625479 -8237148 + (TG)n Simple_repeat Simple_repeat 2 27 0 481 295 194 11 chr9 109625479 109625577 -8237050 + L3 LINE CR1 1342 1421 -156 315 338 162 9 chr9 109625605 109625815 -8236812 + MIR SINE MIR 9 250 -12 1439 254 12 110 chr9 109625831 109626166 -8236461 - AluSp SINE Alu -1 302 1 2146 96 0 3 chr9 109626274 109626580 -8236047 - AluSx SINE Alu 0 307 3 466 291 8 0 chr9 109626706 109626823 -8235804 + MIR SINE MIR 47 164 -98 818 128 8 0 chr9 109626824 109626941 -8235686 + FRAM SINE Alu 20 137 -39 1840 151 0 60 chr9 109627165 109627497 -8235130 + AluJb SINE Alu 1 312 0 1881 151 17 0 chr9 109627518 109627810 -8234817 + AluSx SINE Alu 1 297 -15 310 215 20 121 chr9 109627847 109627996 -8234631 - L1MB7 LINE L1 -13 6171 6038 1684 180 3 7 chr9 109628001 109628295 -8234332 - AluJo SINE Alu -19 293 1 274 230 53 44 chr9 109628307 109628420 -8234207 - L1MC4 LINE L1 -140 7902 7789 1521 136 0 77 chr9 109628435 109628758 -8233869 - AluSx SINE Alu 0 302 5 1592 117 32 12 chr9 109629039 109629287 -8233340 - AluSx SINE Alu -56 256 4 370 125 14 14 chr9 109629318 109629390 -8233237 + CT-rich Low_complexity Low_complexity 4 75 0 365 389 95 14 chr9 109629400 109629757 -8232870 - HAL1 LINE L1 -1205 1302 917 1011 98 7 7 chr9 109629758 109629901 -8232726 + AluSq SINE Alu 142 284 -29 464 58 0 14 chr9 109629901 109629970 -8232657 + (CATA)n Simple_repeat Simple_repeat 2 69 0 1279 165 171 87 chr9 109630059 109630353 -8232274 + MLT1A1 LTR MaLR 1 269 -96 207 0 0 0 chr9 109630353 109630376 -8232251 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1677 182 4 0 chr9 109630378 109630658 -8231969 - AluJo SINE Alu -30 282 2 1279 165 171 87 chr9 109630658 109630694 -8231933 + MLT1A1 LTR MaLR 269 362 -3 238 274 64 96 chr9 109630778 109630935 -8231692 - L3 LINE CR1 -116 1461 1310 2233 85 0 13 chr9 109630988 109631304 -8231323 - AluSx SINE Alu 0 312 1 180 0 0 0 chr9 109631526 109631546 -8231081 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 245 254 18 0 chr9 109631658 109631713 -8230914 + GA-rich Low_complexity Low_complexity 3 58 0 284 162 0 15 chr9 109632824 109632892 -8229735 + (TAGG)n Simple_repeat Simple_repeat 1 67 0 549 0 0 0 chr9 109632899 109632960 -8229667 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 500 231 12 100 chr9 109632977 109633042 -8229585 + MIR SINE MIR 87 156 -106 2081 106 0 14 chr9 109633042 109633335 -8229292 + AluSx SINE Alu 1 289 -23 180 0 0 0 chr9 109633339 109633359 -8229268 + (TAAAA)n Simple_repeat Simple_repeat 3 22 0 500 231 12 100 chr9 109633359 109633448 -8229179 + MIR SINE MIR 159 232 -30 383 158 0 13 chr9 109634736 109634812 -8227815 + CT-rich Low_complexity Low_complexity 2 76 0 1108 83 6 6 chr9 109634816 109634996 -8227631 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1610 173 63 27 chr9 109635006 109635306 -8227321 - AluJb SINE Alu -1 311 1 292 210 210 0 chr9 109635826 109635913 -8226714 - MIR SINE MIR -82 180 68 228 289 141 23 chr9 109635913 109636041 -8226586 + MIR SINE MIR 2 144 -118 2231 100 0 0 chr9 109636058 109636348 -8226279 + AluSc SINE Alu 1 290 -19 2136 117 3 3 chr9 109636358 109636666 -8225961 + AluSx SINE Alu 1 308 -4 198 71 0 0 chr9 109636764 109636792 -8225835 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 1484 144 81 50 chr9 109636935 109637233 -8225394 - AluJo SINE Alu -5 307 1 600 214 17 69 chr9 109637293 109637466 -8225161 + MER33 DNA MER1_type 1 164 -160 1874 137 3 13 chr9 109637466 109637764 -8224863 + AluSq SINE Alu 1 295 -18 2345 65 0 7 chr9 109637764 109638058 -8224569 + AluSp SINE Alu 1 292 -21 3902 159 64 8 chr9 109638058 109638762 -8223865 + ERVL LTR ERVL 1766 2508 -3256 274 75 0 0 chr9 109638769 109638809 -8223818 + ERVL LTR ERVL 2768 2807 -2957 2044 92 39 16 chr9 109638830 109639135 -8223492 + AluSx SINE Alu 1 312 0 1221 111 0 0 chr9 109639142 109639313 -8223314 + AluSg/x SINE Alu 129 299 -11 1552 175 68 14 chr9 109639314 109639606 -8223021 + ERVL LTR ERVL 2813 3120 -2644 * 2781 162 21 0 chr9 109639601 109640071 -8222556 + ERVL LTR ERVL 3355 3834 -1930 2115 123 3 3 chr9 109640071 109640372 -8222255 - AluSx SINE Alu -11 301 1 1625 150 75 10 chr9 109640375 109640668 -8221959 - AluSx SINE Alu 0 312 1 2526 149 22 0 chr9 109640672 109641082 -8221545 + ERVL LTR ERVL 4716 5134 -630 1745 50 5 0 chr9 109641087 109641305 -8221322 - AluY SINE Alu -6 305 87 311 262 0 3 chr9 109641536 109641615 -8221012 - L1MC/D LINE L1 -531 5639 5576 901 102 22 0 chr9 109641760 109641897 -8220730 + LTR40b LTR ERVL 323 462 0 1028 178 10 20 chr9 109641963 109642160 -8220467 + AluJb SINE Alu 105 299 -13 1147 195 72 95 chr9 109642220 109642681 -8219946 + LTR7 LTR ERV1 1 450 0 195 266 73 37 chr9 109642847 109642956 -8219671 - MIR SINE MIR -69 139 27 2102 96 0 4 chr9 109643493 109643804 -8218823 - AluSg SINE Alu 0 310 1 468 289 78 22 chr9 109643898 109644078 -8218549 - MIR SINE MIR -38 224 35 2062 73 4 4 chr9 109644168 109644440 -8218187 - AluSg SINE Alu 0 310 39 495 256 45 40 chr9 109644443 109644619 -8218008 + MIR SINE MIR 71 247 -15 493 311 13 51 chr9 109644619 109644854 -8217773 + L1ME1 LINE L1 5889 6114 -52 1310 118 0 0 chr9 109644854 109645040 -8217587 - AluSq SINE Alu -19 294 109 403 162 0 0 chr9 109645045 109645113 -8217514 + L1MA10 LINE L1 6264 6331 -3 1565 161 68 11 chr9 109645155 109645434 -8217193 + AluJb SINE Alu 1 295 -17 1032 184 12 0 chr9 109645448 109645616 -8217011 + FAM SINE Alu 1 170 -5 2304 93 0 13 chr9 109646132 109646445 -8216182 + AluSc SINE Alu 1 309 0 1996 123 28 0 chr9 109646637 109646922 -8215705 + AluSx SINE Alu 1 293 -19 2121 121 0 3 chr9 109647191 109647504 -8215123 - AluSx SINE Alu 0 312 1 1771 151 11 0 chr9 109648282 109648582 -8214045 + AluJb SINE Alu 2 304 0 290 203 81 0 chr9 109648606 109648680 -8213947 + Charlie2 DNA MER1_type 2340 2419 -443 1649 155 46 3 chr9 109648689 109648992 -8213635 - L1MB3 LINE L1 -3 6180 5865 2282 70 7 0 chr9 109649033 109649331 -8213296 + AluSp SINE Alu 1 300 -13 2146 108 14 0 chr9 109649341 109649637 -8212990 + AluSq SINE Alu 1 300 -13 350 260 40 10 chr9 109650011 109650111 -8212516 - MIR SINE MIR -129 133 31 214 318 113 46 chr9 109650156 109650395 -8212232 - L2 LINE L2 -9 3263 3009 444 240 39 31 chr9 109650716 109650845 -8211782 - L2 LINE L2 -12 3301 3172 1674 112 26 0 chr9 109651342 109651574 -8211053 - AluJo SINE Alu -18 294 57 2094 113 0 7 chr9 109652042 109652344 -8210283 - AluSx SINE Alu -12 300 1 2163 108 0 0 chr9 109652521 109652817 -8209810 - AluSx SINE Alu -16 296 1 1067 195 3 104 chr9 109652846 109653010 -8209617 - MLT1A1 LTR MaLR -58 307 128 1733 136 36 4 chr9 109653010 109653290 -8209337 - AluSx SINE Alu -23 289 1 2274 85 0 0 chr9 109653299 109653594 -8209033 - AluY SINE Alu -12 299 5 1067 195 3 104 chr9 109653594 109653706 -8208921 - MLT1A1 LTR MaLR -245 120 50 509 297 78 0 chr9 109653952 109654162 -8208465 - MIR SINE MIR -16 246 15 332 284 102 45 chr9 109654437 109654613 -8208014 + Charlie2 DNA MER1_type 7 192 -2670 315 165 50 66 chr9 109654650 109654771 -8207856 + Charlie2 DNA MER1_type 2185 2303 -559 1779 127 3 67 chr9 109654772 109654919 -8207708 + AluSx SINE Alu 1 119 -193 2175 79 34 0 chr9 109654919 109655211 -8207416 + AluSg SINE Alu 1 302 -8 1779 127 3 67 chr9 109655211 109655378 -8207249 + AluSx SINE Alu 119 295 -17 1870 169 121 5 chr9 109655480 109655602 -8207025 + ERVL-B1 LTR ERVL 5315 5421 -343 243 0 0 0 chr9 109655602 109655629 -8206998 + (TA)n Simple_repeat Simple_repeat 2 28 0 1870 169 121 5 chr9 109655629 109655903 -8206724 + ERVL-B1 LTR ERVL 5421 5757 -7 1397 215 134 15 chr9 109655903 109656082 -8206545 + MLT2B1 LTR ERVL 1 157 -363 2004 124 0 47 chr9 109656082 109656218 -8206409 + AluSx SINE Alu 1 142 -170 1808 146 3 3 chr9 109656218 109656545 -8206082 + AluSx SINE Alu 1 327 0 2004 124 0 47 chr9 109656545 109656728 -8205899 + AluSx SINE Alu 142 307 -5 1397 215 134 15 chr9 109656728 109656943 -8205684 + MLT2B1 LTR ERVL 157 442 -78 597 40 0 0 chr9 109656958 109657034 -8205593 + (TCTA)n Simple_repeat Simple_repeat 2 77 0 1570 180 3 24 chr9 109657037 109657332 -8205295 - AluJo SINE Alu -23 289 1 360 211 13 13 chr9 109657362 109657438 -8205189 + Tigger3b DNA MER2_type 3 78 -1153 377 207 4 0 chr9 109657519 109657628 -8204999 + AluJ/FLAM SINE Alu 13 79 -223 1079 198 12 0 chr9 109657651 109657893 -8204734 + Tigger3b DNA MER2_type 327 571 -660 1792 134 10 13 chr9 109657897 109658202 -8204425 + AluSx SINE Alu 2 305 -7 2075 119 7 0 chr9 109658208 109658503 -8204124 + AluSx SINE Alu 3 299 -13 704 208 13 13 chr9 109658735 109658809 -8203818 + MER45A DNA AcHobo 30 103 -1478 2355 40 0 27 chr9 109658809 109659109 -8203518 - AluY SINE Alu -5 306 15 704 208 13 13 chr9 109659109 109659183 -8203444 + MER45A DNA AcHobo 102 178 0 432 0 0 0 chr9 109660132 109660180 -8202447 + (CA)n Simple_repeat Simple_repeat 2 49 0 204 337 63 69 chr9 109660511 109660575 -8202052 + MER5B DNA MER1_type 1 64 -114 2003 119 10 3 chr9 109660575 109660868 -8201759 + AluSx SINE Alu 1 295 -17 204 337 63 69 chr9 109660868 109660978 -8201649 + MER5B DNA MER1_type 64 174 -4 234 128 0 0 chr9 109661141 109661180 -8201447 + (CA)n Simple_repeat Simple_repeat 2 40 0 217 263 100 16 chr9 109661935 109662042 -8200585 - MIR SINE MIR -72 136 16 382 294 91 20 chr9 109662873 109663070 -8199557 - L2 LINE L2 -276 3037 2827 2133 104 3 0 chr9 109663370 109663668 -8198959 + AluSq SINE Alu 14 312 -1 2016 121 3 37 chr9 109663769 109664091 -8198536 + AluSx SINE Alu 1 311 -1 1273 163 0 26 chr9 109664363 109664627 -8198000 + AluSc SINE Alu 37 293 -16 182 289 0 0 chr9 109665548 109665600 -8197027 + MIR SINE MIR 186 237 -25 2069 123 0 0 chr9 109665604 109665896 -8196731 - AluSx SINE Alu -20 292 1 1598 152 72 17 chr9 109666053 109666343 -8196284 + AluJb SINE Alu 1 306 -6 1865 137 0 10 chr9 109666343 109666641 -8195986 + AluSp SINE Alu 1 297 -16 290 341 88 16 chr9 109666659 109666841 -8195786 + MIR3 SINE MIR 9 203 -5 1943 98 0 48 chr9 109667504 109667819 -8194808 + AluSq SINE Alu 1 300 -13 227 313 0 0 chr9 109668160 109668224 -8194403 + L2 LINE L2 3229 3292 -21 350 333 35 30 chr9 109668608 109668688 -8193939 + L1ME4a LINE L1 5733 5811 -310 1679 135 69 17 chr9 109668688 109668976 -8193651 - AluSx SINE Alu -9 303 1 350 333 35 30 chr9 109668976 109669096 -8193531 + L1ME4a LINE L1 5811 5934 -187 405 217 8 17 chr9 109669264 109669384 -8193243 + L1MC/D LINE L1 5372 5490 -2318 2360 90 0 3 chr9 109669511 109669823 -8192804 + AluSx SINE Alu 1 311 -1 216 0 0 0 chr9 109670000 109670024 -8192603 + (A)n Simple_repeat Simple_repeat 1 24 0 268 322 38 109 chr9 109670717 109670900 -8191727 - L2 LINE L2 -93 3179 3010 1100 181 57 9 chr9 109670902 109671112 -8191515 + AluJo SINE Alu 1 220 -92 231 136 0 0 chr9 109671112 109671156 -8191471 + Alu SINE Alu 86 129 -4 2002 128 7 13 chr9 109671158 109671463 -8191164 + AluJb SINE Alu 1 303 -9 430 288 137 4 chr9 109671464 109671722 -8190905 - L2 LINE L2 -254 3018 2733 185 209 23 0 chr9 109671838 109671881 -8190746 + L2 LINE L2 3210 3253 -19 1794 142 16 29 chr9 109672864 109673180 -8189447 + AluJb SINE Alu 1 312 0 1944 118 49 0 chr9 109673216 109673503 -8189124 + AluSx SINE Alu 1 301 -11 289 311 135 27 chr9 109673519 109673667 -8188960 + MIR SINE MIR 21 184 -78 574 195 63 104 chr9 109675314 109675338 -8187289 + MER110A LTR ERV1 44 67 -401 2055 182 26 81 chr9 109675338 109675871 -8186756 + MLT1D LTR MaLR 1 504 -1 574 195 63 104 chr9 109675871 109676002 -8186625 + MER110A LTR ERV1 67 190 -278 1692 164 0 10 chr9 109676002 109676295 -8186332 + AluJo SINE Alu 1 290 -22 574 195 63 104 chr9 109676295 109676359 -8186268 + MER110A LTR ERV1 190 255 -213 2054 104 4 0 chr9 109676363 109676642 -8185985 + AluSx SINE Alu 11 290 -22 2170 100 3 3 chr9 109676706 109677005 -8185622 - AluSc SINE Alu -10 299 1 343 299 85 34 chr9 109677236 109677413 -8185214 + MIR SINE MIR 33 218 -44 252 224 75 0 chr9 109677438 109677505 -8185122 + MIR SINE MIR 111 182 -80 180 233 70 0 chr9 109678310 109678353 -8184274 + MIR SINE MIR 100 145 -63 356 222 0 0 chr9 109678501 109678573 -8184054 + L1ME3 LINE L1 6037 6108 -54 2075 118 0 0 chr9 109678573 109678860 -8183767 + AluSx SINE Alu 1 287 -25 1668 95 0 0 chr9 109678963 109679185 -8183442 + AluSq SINE Alu 85 306 -7 1864 131 3 10 chr9 109679502 109679800 -8182827 - AluSx SINE Alu -16 296 1 332 217 0 14 chr9 109679805 109679874 -8182753 - L1ME3 LINE L1 -58 6104 6037 180 233 70 0 chr9 109680022 109680065 -8182562 - MIR SINE MIR -63 145 100 252 224 75 0 chr9 109680873 109680940 -8181687 - MIR SINE MIR -80 182 111 335 305 85 34 chr9 109680965 109681142 -8181485 - MIR SINE MIR -44 218 33 1084 170 0 10 chr9 109681608 109681802 -8180825 - AluSg SINE Alu -118 192 1 2007 109 3 17 chr9 109681874 109682176 -8180451 - AluSx SINE Alu -14 298 1 248 121 33 44 chr9 109683053 109683144 -8179483 + CT-rich Low_complexity Low_complexity 5 94 0 4299 158 56 47 chr9 109684629 109684932 -8177695 + ERVL-B1 LTR ERVL 4834 5133 -631 2019 93 3 19 chr9 109684932 109685242 -8177385 - AluY SINE Alu -6 305 1 4299 158 56 47 chr9 109685242 109685379 -8177248 + ERVL-B1 LTR ERVL 5133 5267 -497 1665 125 110 0 chr9 109685379 109685651 -8176976 + AluJb SINE Alu 1 302 -10 4299 158 56 47 chr9 109685651 109686125 -8176502 + ERVL-B1 LTR ERVL 5267 5757 -7 1359 211 133 30 chr9 109686125 109686304 -8176323 + MLT2B1 LTR ERVL 1 160 -360 1661 126 0 117 chr9 109686304 109686441 -8176186 + AluSx SINE Alu 1 76 -226 1836 148 3 13 chr9 109686441 109686751 -8175876 + AluSx SINE Alu 1 307 -5 1661 126 0 117 chr9 109686751 109686954 -8175673 + AluSx SINE Alu 76 301 -1 1359 211 133 30 chr9 109686954 109687173 -8175454 + MLT2B1 LTR ERVL 160 440 -80 892 175 6 6 chr9 109687293 109687453 -8175174 + AluJb SINE Alu 146 305 -7 2044 125 0 22 chr9 109687489 109687848 -8174779 + AluSp SINE Alu 1 352 0 1609 120 26 4 chr9 109688275 109688509 -8174118 + AluJo SINE Alu 57 295 -17 444 240 39 31 chr9 109689007 109689136 -8173491 + L2 LINE L2 3172 3301 -12 214 318 113 46 chr9 109689459 109689698 -8172929 + L2 LINE L2 3009 3263 -9 350 260 40 10 chr9 109689743 109689843 -8172784 + MIR SINE MIR 31 133 -129 2146 108 14 0 chr9 109690227 109690523 -8172104 - AluSq SINE Alu -13 300 1 2212 70 7 7 chr9 109690533 109690833 -8171794 - AluSp SINE Alu -13 300 1 1649 155 46 3 chr9 109690874 109691177 -8171450 + L1MB3 LINE L1 5865 6180 -3 291 208 83 0 chr9 109691189 109691261 -8171366 - Charlie2 DNA MER1_type -445 2417 2340 1799 160 10 3 chr9 109691288 109691588 -8171039 - AluJb SINE Alu -9 303 2 2121 121 0 3 chr9 109692374 109692687 -8169940 + AluSx SINE Alu 1 312 0 1904 128 3 3 chr9 109692957 109693247 -8169380 - AluSg SINE Alu -19 291 2 1742 154 0 0 chr9 109693272 109693539 -8169088 + AluSx SINE Alu 1 267 -45 1037 161 5 26 chr9 109693675 109693868 -8168759 - AluSg/x SINE Alu -27 283 95 195 271 47 75 chr9 109694145 109694252 -8168375 + MIR SINE MIR 81 184 -78 291 323 62 0 chr9 109694953 109695083 -8167544 - MIR SINE MIR -95 167 30 935 224 0 25 chr9 109695950 109696151 -8166476 - MER3 DNA MER1_type 0 209 14 1320 36 0 12 chr9 109696156 109696324 -8166303 - AluY SINE Alu -14 297 132 2113 104 0 0 chr9 109696329 109696617 -8166010 - AluSx SINE Alu -24 288 1 852 128 8 0 chr9 109696739 109696864 -8165763 + FLAM_C SINE Alu 1 126 -17 209 310 14 0 chr9 109697689 109697760 -8164867 + L2 LINE L2 3236 3307 -6 318 224 149 56 chr9 109697805 109697966 -8164661 + MIR SINE MIR 39 214 -48 2455 58 0 0 chr9 109698418 109698726 -8163901 - AluY SINE Alu -3 308 1 2326 61 7 3 chr9 109698730 109699027 -8163600 - AluSq SINE Alu -15 298 1 562 133 117 8 chr9 109699040 109699160 -8163467 - FLAM_C SINE Alu 0 133 1 29 0 0 0 chr9 109699618 109699647 -8162980 + GC_rich Low_complexity Low_complexity 1 29 0 1795 112 86 7 chr9 109700755 109701033 -8161594 + AluSx SINE Alu 3 302 -10 2200 74 0 13 chr9 109701033 109701342 -8161285 + AluY SINE Alu 1 305 -6 1571 96 127 19 chr9 109701367 109701627 -8161000 + AluSg SINE Alu 17 304 -6 201 263 105 74 chr9 109701628 109701723 -8160904 - MIR SINE MIR -79 129 32 1370 159 0 0 chr9 109702113 109702321 -8160306 + AluJo SINE Alu 93 300 -12 1640 137 0 48 chr9 109702794 109703107 -8159520 + AluSx SINE Alu 11 308 -4 2272 67 20 3 chr9 109703772 109704071 -8158556 + AluY SINE Alu 1 304 -7 843 211 6 0 chr9 109704090 109704261 -8158366 + FRAM SINE Alu 1 169 -7 1902 119 28 3 chr9 109704418 109704704 -8157923 + AluSx SINE Alu 1 293 -19 2236 110 0 7 chr9 109704744 109705053 -8157574 - AluSp SINE Alu -5 308 2 922 154 13 6 chr9 109705913 109706069 -8156558 - AluSg/x SINE Alu -20 292 136 2230 90 3 0 chr9 109707946 109708236 -8154391 + AluSp SINE Alu 1 291 -22 254 299 39 0 chr9 109708613 109708690 -8153937 + L3 LINE CR1 1349 1428 -149 201 221 27 121 chr9 109710572 109710721 -8151906 + (CCCA)n Simple_repeat Simple_repeat 3 137 0 208 213 64 0 chr9 109710735 109710782 -8151845 - L2 LINE L2 -100 3172 3123 214 268 56 14 chr9 109711390 109711461 -8151166 + MIR SINE MIR 183 256 -6 230 242 165 0 chr9 109711570 109711661 -8150966 - L2 LINE L2 -30 3283 3178 591 255 143 105 chr9 109711936 109712823 -8149804 + L2 LINE L2 2379 3310 -3 230 346 58 10 chr9 109713280 109713384 -8149243 + MIR SINE MIR 20 128 -80 2423 57 3 0 chr9 109713621 109713917 -8148710 + AluY SINE Alu 1 297 -14 1599 152 0 54 chr9 109713932 109714228 -8148399 + AluJo SINE Alu 12 291 -21 1973 120 20 0 chr9 109714228 109714519 -8148108 + AluSx SINE Alu 1 298 -14 294 224 248 32 chr9 109714519 109714644 -8147983 - MER5A DNA MER1_type 0 189 38 657 220 100 30 chr9 109715219 109715419 -8147208 - MIR SINE MIR -28 234 21 1883 108 3 44 chr9 109715540 109715676 -8146951 + AluSx SINE Alu 1 141 -205 1886 123 20 17 chr9 109715676 109715976 -8146651 + AluSx SINE Alu 1 301 -11 1883 108 3 44 chr9 109715976 109716197 -8146430 + AluSx SINE Alu 141 346 0 541 227 32 77 chr9 109716267 109716335 -8146292 - MIR SINE MIR 0 262 192 2051 118 14 0 chr9 109716335 109716622 -8146005 - AluSg SINE Alu -19 291 1 541 227 32 77 chr9 109716622 109716773 -8145854 - MIR SINE MIR -70 192 53 1690 154 14 14 chr9 109716806 109717098 -8145529 - AluJb SINE Alu -17 295 4 1904 133 0 41 chr9 109717222 109717538 -8145089 + AluSq SINE Alu 1 303 -10 239 376 75 8 chr9 109717654 109717787 -8144840 - MIR SINE MIR -106 156 15 2075 130 0 0 chr9 109717814 109718113 -8144514 + AluSx SINE Alu 1 299 -13 2124 118 3 0 chr9 109718186 109718492 -8144135 + AluSq SINE Alu 1 307 -6 357 90 13 51 chr9 109719693 109719771 -8142856 + (CCCCAG)n Simple_repeat Simple_repeat 1 75 0 426 127 16 40 chr9 109719863 109719989 -8142638 + (CCCCAG)n Simple_repeat Simple_repeat 1 123 0 314 23 0 23 chr9 109720063 109720107 -8142520 + (CCCCAG)n Simple_repeat Simple_repeat 2 44 0 1973 108 4 0 chr9 109720520 109720798 -8141829 + AluSx SINE Alu 2 280 -32 261 0 0 0 chr9 109720809 109720838 -8141789 + (TAA)n Simple_repeat Simple_repeat 2 30 0 3930 137 164 118 chr9 109720841 109721141 -8141486 - L1MC3 LINE L1 -13 7772 7487 1965 80 12 0 chr9 109721141 109721391 -8141236 - AluSc SINE Alu -56 253 1 3930 137 164 118 chr9 109721391 109721661 -8140966 - L1MC3 LINE L1 -298 7487 7231 288 310 0 10 chr9 109721661 109721761 -8140866 - MLT1F1 LTR MaLR -445 122 24 3930 137 164 118 chr9 109721761 109722094 -8140533 - L1MC3 LINE L1 -554 7231 6915 2164 121 3 6 chr9 109722094 109722407 -8140220 + AluSx SINE Alu 1 312 0 3930 137 164 118 chr9 109722407 109722691 -8139936 - L1MC3 LINE L1 -870 6915 6425 183 224 122 0 chr9 109722770 109722819 -8139808 - L2 LINE L2 -5 3267 3213 279 299 63 16 chr9 109722969 109723096 -8139531 - L2 LINE L2 -6 3307 3175 349 248 120 8 chr9 109723096 109723221 -8139406 - MIR SINE MIR -115 147 9 2348 92 0 6 chr9 109723980 109724295 -8138332 - AluSp SINE Alu 0 313 1 306 288 63 9 chr9 109724499 109724610 -8138017 + L2 LINE L2 3185 3301 -12 2215 113 3 0 chr9 109724614 109724925 -8137702 - AluSx SINE Alu 0 312 1 857 202 0 35 chr9 109724931 109725104 -8137523 - AluJo SINE Alu -16 296 130 325 285 197 0 chr9 109725184 109725321 -8137306 - MIR SINE MIR -77 185 22 748 179 0 0 chr9 109726347 109726459 -8136168 - FLAM_C SINE Alu -30 113 2 662 121 40 0 chr9 109726460 109726559 -8136068 - AluJo SINE Alu -14 298 196 605 161 59 17 chr9 109726561 109726679 -8135948 - AluJo SINE Alu -169 143 21 2124 108 7 0 chr9 109726715 109727012 -8135615 - AluSg1 SINE Alu -10 299 1 2192 99 3 0 chr9 109727624 109727926 -8134701 - AluSp SINE Alu -10 303 1 1029 190 20 0 chr9 109728396 109728591 -8134036 + MER2 DNA MER2_type 1 199 -146 21 36 0 0 chr9 109728607 109728635 -8133992 + AT_rich Low_complexity Low_complexity 1 28 0 2078 115 0 0 chr9 109728653 109728941 -8133686 - AluSx SINE Alu -24 288 1 981 184 0 0 chr9 109728995 109729158 -8133469 - AluJ SINE Alu -15 297 135 304 325 0 0 chr9 109729158 109729235 -8133392 - L1MC4 LINE L1 -1352 6690 6614 * 332 326 0 0 chr9 109729218 109729304 -8133323 + L1MC4 LINE L1 6615 6700 -1342 829 115 57 8 chr9 109729305 109729427 -8133200 - AluJ SINE Alu -179 133 6 699 291 60 58 chr9 109730168 109730649 -8131978 + L1ME4a LINE L1 5618 6099 -22 508 276 128 5 chr9 109732472 109732668 -8129959 - MIR SINE MIR -2 260 41 183 191 48 0 chr9 109732682 109732724 -8129903 + L2 LINE L2 3218 3261 -11 327 295 175 16 chr9 109733710 109733893 -8128734 - L2 LINE L2 0 3313 3102 362 354 134 33 chr9 109734186 109734245 -8128382 + L3 LINE CR1 1195 1247 -330 2317 87 0 0 chr9 109734245 109734544 -8128083 - AluSx SINE Alu -13 299 1 362 354 134 33 chr9 109734544 109734820 -8127807 + L3 LINE CR1 1247 1564 -13 540 250 29 58 chr9 109735300 109735508 -8127119 + MIR SINE MIR 4 205 -57 818 282 83 42 chr9 109736706 109736969 -8125658 - L1MC4 LINE L1 -3 8039 7788 2269 99 0 0 chr9 109736969 109737273 -8125354 - AluSq SINE Alu -9 304 1 818 282 83 42 chr9 109737273 109737299 -8125328 - L1MC4 LINE L1 -254 7788 7765 2350 164 18 3 chr9 109737299 109737683 -8124944 - MLT1B LTR MaLR 0 390 1 818 282 83 42 chr9 109737683 109737825 -8124802 - L1MC4 LINE L1 -277 7765 7589 185 311 0 16 chr9 109738131 109738192 -8124435 + MIR SINE MIR 82 141 -67 428 292 167 0 chr9 109738302 109738446 -8124181 - MIR SINE MIR -48 214 47 181 316 158 0 chr9 109738603 109738698 -8123929 + L2 LINE L2 3152 3261 -11 2228 94 0 3 chr9 109738798 109739095 -8123532 - AluSg SINE Alu -14 296 1 691 304 89 79 chr9 109739215 109739350 -8123277 + L1ME4a LINE L1 5520 5652 -469 1906 155 0 0 chr9 109739350 109739654 -8122973 + AluSx SINE Alu 1 304 -8 2021 108 3 11 chr9 109739658 109739968 -8122659 + AluSq SINE Alu 3 310 0 691 304 89 79 chr9 109739968 109739994 -8122633 + L1ME4a LINE L1 5654 5678 -443 1605 182 3 14 chr9 109739994 109740285 -8122342 + AluJb SINE Alu 11 298 -14 691 304 89 79 chr9 109740285 109740546 -8122081 + L1ME4a LINE L1 5678 5959 -162 1930 151 7 0 chr9 109740546 109740851 -8121776 + AluJb SINE Alu 1 307 -5 691 304 89 79 chr9 109740851 109741015 -8121612 + L1ME4a LINE L1 5959 6120 -1 955 142 0 0 chr9 109741103 109741244 -8121383 + AluJb SINE Alu 1 141 -171 440 132 0 55 chr9 109741627 109741718 -8120909 - LTR9 LTR ERV1 -86 526 441 789 166 55 37 chr9 109741730 109741893 -8120734 - FRAM SINE Alu 0 166 1 318 203 215 0 chr9 109741960 109742039 -8120588 - L1ME4a LINE L1 -16 6105 6010 2247 78 0 25 chr9 109742112 109742431 -8120196 - AluY SINE Alu 0 311 1 180 0 0 0 chr9 109742431 109742451 -8120176 + (TA)n Simple_repeat Simple_repeat 2 21 0 1966 141 0 7 chr9 109742451 109742750 -8119877 - AluJo SINE Alu -5 307 11 1623 212 77 4 chr9 109742766 109742825 -8119802 - L1MB3 LINE L1 -224 5940 5887 2056 128 0 10 chr9 109742825 109743129 -8119498 - AluSq SINE Alu -12 301 1 1623 212 77 4 chr9 109743129 109743493 -8119134 - L1MB3 LINE L1 -277 5887 5497 2232 103 0 0 chr9 109743501 109743802 -8118825 - AluSg SINE Alu -9 301 1 914 233 38 52 chr9 109743931 109744252 -8118375 - L1ME2 LINE L1 -9 6155 5839 2275 89 7 0 chr9 109744313 109744616 -8118011 + AluSp SINE Alu 1 305 -8 208 228 70 0 chr9 109744649 109744706 -8117921 + MIR SINE MIR 98 158 -104 1109 126 12 0 chr9 109744798 109744965 -8117662 + AluSg/x SINE Alu 129 297 -13 1712 171 0 16 chr9 109745776 109746080 -8116547 + AluJo SINE Alu 3 301 -11 443 230 109 57 chr9 109746278 109746508 -8116119 + L1MC5 LINE L1 7653 7894 -67 310 339 100 22 chr9 109746629 109746809 -8115818 + MIR SINE MIR 54 247 -15 1991 132 6 0 chr9 109746940 109747251 -8115376 - AluSp SINE Alu 0 313 1 534 172 20 0 chr9 109747444 109747543 -8115084 - L1MD2 LINE L1 -10 6349 6249 1096 138 12 0 chr9 109747556 109747723 -8114904 - FRAM SINE Alu -11 165 1 748 208 99 16 chr9 109747726 109747918 -8114709 - L1MD2 LINE L1 -110 6249 6042 381 304 165 0 chr9 109748579 109748773 -8113854 - MIR SINE MIR -24 238 13 921 308 84 19 chr9 109749418 109749844 -8112783 - L1MC4a LINE L1 -1736 6072 5619 439 312 106 37 chr9 109750254 109750859 -8111768 + L1MC4a LINE L1 5283 5986 -135 216 272 86 35 chr9 109751288 109751445 -8111182 + MIR SINE MIR 49 214 -48 2387 76 0 0 chr9 109751447 109751748 -8110879 + AluY SINE Alu 1 301 -10 572 259 69 51 chr9 109751786 109752096 -8110531 - MLT1J LTR MaLR -157 341 6 192 333 33 42 chr9 109752948 109753068 -8109559 + MIR SINE MIR 34 152 -56 424 233 173 8 chr9 109753198 109753331 -8109296 + L1ME4a LINE L1 5967 6121 0 260 292 0 15 chr9 109754413 109754478 -8108149 + MIR SINE MIR 8 71 -191 247 273 82 9 chr9 109755049 109755159 -8107468 - L2 LINE L2 -10 3262 3145 1995 130 0 0 chr9 109755553 109755871 -8106756 - AluSx SINE Alu 0 318 1 350 289 152 53 chr9 109755928 109756050 -8106577 + L1ME4a LINE L1 5833 5942 -179 1882 139 14 0 chr9 109756050 109756337 -8106290 + AluJo SINE Alu 1 291 -21 350 289 152 53 chr9 109756337 109756348 -8106279 + L1ME4a LINE L1 5942 5951 -170 2391 71 0 0 chr9 109756348 109756644 -8105983 + AluY SINE Alu 3 298 -13 350 289 152 53 chr9 109756644 109756772 -8105855 + L1ME4a LINE L1 5951 6121 0 1246 176 180 0 chr9 109756785 109757029 -8105598 + AluJo SINE Alu 3 290 -12 415 277 101 14 chr9 109758022 109758170 -8104457 + L1ME4a LINE L1 5591 5751 -370 228 308 51 0 chr9 109758456 109758534 -8104093 + L1ME4a LINE L1 5945 6026 -95 2212 101 0 0 chr9 109758569 109758867 -8103760 + AluY SINE Alu 1 298 -13 249 172 37 164 chr9 109758883 109758921 -8103706 - MLT1B LTR MaLR -272 118 77 1931 126 7 7 chr9 109758921 109759233 -8103394 + AluSx SINE Alu 1 312 0 249 172 37 164 chr9 109759233 109759328 -8103299 - MLT1B LTR MaLR -313 77 2 414 338 8 8 chr9 109759720 109759853 -8102774 - MIR SINE MIR -76 186 54 2365 85 0 0 chr9 109760123 109760430 -8102197 + AluSc SINE Alu 1 307 -2 1936 137 10 13 chr9 109760484 109760791 -8101836 + AluJo SINE Alu 1 306 -6 2181 106 0 0 chr9 109760797 109761090 -8101537 + AluSg SINE Alu 7 299 -11 329 181 0 28 chr9 109761229 109761301 -8101326 + L1ME4a LINE L1 6048 6117 -4 405 273 104 13 chr9 109761801 109761955 -8100672 - MIR SINE MIR -36 226 59 847 182 0 65 chr9 109761956 109762126 -8100501 - AluJb SINE Alu -17 295 137 21 71 0 0 chr9 109762227 109762269 -8100358 + AT_rich Low_complexity Low_complexity 1 42 0 410 265 111 18 chr9 109762678 109762849 -8099778 - MIR SINE MIR -61 147 5 281 278 30 30 chr9 109764003 109764136 -8098491 + MIR SINE MIR 16 148 -114 344 319 98 6 chr9 109767074 109767237 -8095390 - L1ME LINE L1 -690 5480 5303 3298 207 111 48 chr9 109767283 109768001 -8094626 - L1MB3 LINE L1 -2 6181 5510 221 0 35 0 chr9 109768001 109768030 -8094597 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 2155 81 3 3 chr9 109768030 109768313 -8094314 - AluSx SINE Alu -29 283 1 3298 207 111 48 chr9 109768313 109768454 -8094173 - L1MB3 LINE L1 -673 5510 5379 2010 125 7 3 chr9 109768454 109768749 -8093878 - AluSx SINE Alu -16 296 1 3298 207 111 48 chr9 109768749 109768998 -8093629 - L1MB3 LINE L1 -804 5379 4977 622 209 61 0 chr9 109769036 109769151 -8093476 + FLAM_A SINE Alu 1 122 -11 2179 102 16 22 chr9 109769367 109769681 -8092946 - AluSx SINE Alu 0 312 1 246 232 232 18 chr9 109770393 109770561 -8092066 - L2 LINE L2 -255 3058 2855 2299 112 0 0 chr9 109772654 109772966 -8089661 + AluSx SINE Alu 1 312 0 856 146 146 36 chr9 109773097 109773289 -8089338 - MER20 DNA MER1_type -6 213 1 1906 151 0 13 chr9 109773536 109773841 -8088786 + AluJb SINE Alu 3 303 -9 964 149 6 31 chr9 109773849 109774010 -8088617 + FRAM SINE Alu 1 157 -9 2135 91 7 3 chr9 109774088 109774374 -8088253 + AluSx SINE Alu 1 287 -25 261 313 86 8 chr9 109775401 109775529 -8087098 + MIR SINE MIR 2 139 -123 2589 202 58 15 chr9 109778629 109779086 -8083541 - MER41D LTR ERV1 0 557 72 2158 115 0 0 chr9 109779086 109779381 -8083246 - AluSx SINE Alu -17 295 1 2589 202 58 15 chr9 109779381 109779453 -8083174 - MER41D LTR ERV1 -485 72 5 1928 116 0 48 chr9 109779661 109779972 -8082655 - AluSc SINE Alu -13 296 1 955 110 0 0 chr9 109780117 109780244 -8082383 - FLAM_C SINE Alu -6 127 1 2318 96 0 3 chr9 109785585 109785897 -8076730 + AluSx SINE Alu 1 311 -1 214 264 0 0 chr9 109786156 109786209 -8076418 + (TG)n Simple_repeat Simple_repeat 2 54 0 187 53 26 26 chr9 109786944 109786982 -8075645 + (GGGGA)n Simple_repeat Simple_repeat 2 39 0 2244 97 0 0 chr9 109787172 109787471 -8075156 + AluSg SINE Alu 1 299 -11 1639 170 6 22 chr9 109787475 109787787 -8074840 + AluJo SINE Alu 1 307 -5 459 0 0 0 chr9 109788664 109788715 -8073912 + (CA)n Simple_repeat Simple_repeat 2 52 0 2103 127 3 32 chr9 109789619 109789934 -8072693 + AluSx SINE Alu 1 306 -6 2301 101 7 3 chr9 109789934 109790231 -8072396 + AluSc SINE Alu 1 298 -11 237 93 56 0 chr9 109790772 109790826 -8071801 + A-rich Low_complexity Low_complexity 2 58 0 2144 89 44 7 chr9 109791075 109791368 -8071259 + AluSx SINE Alu 1 304 -8 1697 136 8 0 chr9 109792698 109792941 -8069686 - AluSq SINE Alu -30 283 39 2001 80 84 17 chr9 109792941 109793228 -8069399 - AluSx SINE Alu -6 306 1 549 144 10 10 chr9 109793730 109793827 -8068800 - MER103 DNA DNA -59 107 11 22 35 0 0 chr9 109793841 109793870 -8068757 + AT_rich Low_complexity Low_complexity 1 29 0 207 0 0 0 chr9 109793886 109793909 -8068718 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 663 177 154 0 chr9 109793909 109794039 -8068588 - FRAM SINE Alu -16 150 1 2302 105 3 0 chr9 109794122 109794427 -8068200 - AluSq SINE Alu -7 306 1 2200 111 3 0 chr9 109794796 109795085 -8067542 - AluSc SINE Alu -19 290 1 2318 101 0 0 chr9 109795378 109795675 -8066952 - AluSx SINE Alu -15 297 1 1873 137 0 59 chr9 109795726 109796033 -8066594 + AluJo SINE Alu 1 289 -23 466 89 64 45 chr9 109796033 109796190 -8066437 + GA-rich Low_complexity Low_complexity 1 160 0 1002 104 8 0 chr9 109797422 109797556 -8065071 + AluSq/x SINE Alu 1 135 -178 2160 125 13 0 chr9 109797556 109797859 -8064768 + AluSx SINE Alu 1 307 -5 2193 133 0 0 chr9 109797927 109798228 -8064399 + AluSx SINE Alu 1 301 -11 1381 163 67 53 chr9 109798620 109798902 -8063725 + AluJo SINE Alu 8 293 -19 2019 105 7 62 chr9 109799340 109799644 -8062983 - AluSq SINE Alu -21 292 6 37 16 0 48 chr9 109799907 109799970 -8062657 + AT_rich Low_complexity Low_complexity 1 60 0 1024 121 0 0 chr9 109799987 109800128 -8062499 - AluJo SINE Alu -171 141 1 1615 102 0 0 chr9 109800145 109800361 -8062266 + AluSg/x SINE Alu 94 309 -3 199 266 94 0 chr9 109800869 109800933 -8061694 + L2 LINE L2 1397 1466 -1848 388 264 68 64 chr9 109800981 109801216 -8061411 + L2 LINE L2 3078 3313 0 41 87 0 0 chr9 109801216 109801320 -8061307 + AT_rich Low_complexity Low_complexity 1 104 0 324 224 122 28 chr9 109801391 109801498 -8061129 + L2 LINE L2 1713 1829 -1485 645 240 146 61 chr9 109801498 109801572 -8061055 - L1M4 LINE L1 -2889 3257 3191 189 0 0 0 chr9 109801572 109801593 -8061034 + (TG)n Simple_repeat Simple_repeat 2 22 0 645 240 146 61 chr9 109801593 109801622 -8061005 - L1M4 LINE L1 -2955 3191 3166 2089 123 11 0 chr9 109801622 109801906 -8060721 - AluSx SINE Alu -25 287 1 645 240 146 61 chr9 109801906 109802173 -8060454 - L1M4 LINE L1 -2980 3166 2923 2465 85 3 0 chr9 109802173 109802480 -8060147 - AluSp SINE Alu -5 308 1 645 240 146 61 chr9 109802480 109802638 -8059989 - L1M4 LINE L1 -3223 2923 2780 2446 114 25 11 chr9 109802638 109802997 -8059630 + THE1B LTR MaLR 1 364 0 645 240 146 61 chr9 109802997 109803070 -8059557 - L1M4 LINE L1 -3366 2780 2602 2319 90 0 0 chr9 109803085 109803375 -8059252 - AluSc SINE Alu -19 290 1 389 266 29 72 chr9 109803430 109803637 -8058990 - L1M4 LINE L1 -3816 2330 2133 182 289 0 0 chr9 109803654 109803699 -8058928 - MIR SINE MIR -30 232 188 336 135 0 0 chr9 109803783 109803835 -8058792 - AluJb SINE Alu -10 292 241 414 0 0 0 chr9 109803878 109803924 -8058703 + (TG)n Simple_repeat Simple_repeat 2 47 0 2446 74 3 0 chr9 109804027 109804324 -8058303 - AluY SINE Alu -13 298 1 935 132 20 13 chr9 109804344 109804496 -8058131 - AluJb SINE Alu -79 233 81 1957 140 17 20 chr9 109804502 109804802 -8057825 - AluJo SINE Alu -13 299 1 33 0 0 0 chr9 109804821 109804854 -8057773 + AT_rich Low_complexity Low_complexity 1 33 0 2146 128 0 3 chr9 109804854 109805151 -8057476 - AluSx SINE Alu -16 296 1 1694 101 151 0 chr9 109805924 109806182 -8056445 - AluSx SINE Alu -5 297 1 2372 95 0 3 chr9 109806499 109806803 -8055824 + AluSg SINE Alu 2 304 -6 231 36 0 0 chr9 109807145 109807173 -8055454 + (TG)n Simple_repeat Simple_repeat 1 28 0 729 119 0 0 chr9 109807349 109807458 -8055169 - AluSp SINE Alu -203 110 2 3786 151 97 75 chr9 109807458 109807948 -8054679 + MER21A LTR ERV1 62 579 -352 2147 123 3 13 chr9 109807948 109808258 -8054369 + AluSg SINE Alu 1 307 -3 3786 151 97 75 chr9 109808258 109808602 -8054025 + MER21A LTR ERV1 579 914 -17 2404 86 3 7 chr9 109808705 109809008 -8053619 + AluSp SINE Alu 1 302 -11 931 169 40 55 chr9 109809077 109809236 -8053391 + MER3 DNA MER1_type 8 165 -44 2074 113 41 0 chr9 109809236 109809529 -8053098 + AluSx SINE Alu 1 305 -7 931 169 40 55 chr9 109809529 109809570 -8053057 + MER3 DNA MER1_type 165 205 -4 2382 84 0 0 chr9 109809787 109810085 -8052542 + AluSx SINE Alu 1 298 -14 1617 142 94 21 chr9 109810166 109810454 -8052173 - AluJb SINE Alu -3 309 1 1070 178 0 0 chr9 109810461 109810635 -8051992 - FRAM SINE Alu -2 174 1 21 0 0 0 chr9 109810958 109810979 -8051648 + AT_rich Low_complexity Low_complexity 1 21 0 414 85 0 0 chr9 109811034 109811093 -8051534 + (TA)n Simple_repeat Simple_repeat 1 59 0 1986 126 3 3 chr9 109811676 109811962 -8050665 - AluSx SINE Alu -26 286 1 183 80 0 0 chr9 109812313 109812338 -8050289 + (GA)n Simple_repeat Simple_repeat 2 26 0 2465 84 7 0 chr9 109812634 109812943 -8049684 + AluSp SINE Alu 1 311 -2 2167 94 21 3 chr9 109813318 109813604 -8049023 - AluSg SINE Alu -19 291 1 1663 155 63 7 chr9 109813649 109813933 -8048694 - AluJb SINE Alu -12 300 1 180 125 0 0 chr9 109815163 109815195 -8047432 + (A)n Simple_repeat Simple_repeat 1 32 0 2374 93 0 0 chr9 109816609 109816898 -8045729 - AluSg SINE Alu -21 289 1 527 165 184 0 chr9 109817568 109817677 -8044950 - FLAM_A SINE Alu -4 129 1 2323 78 0 59 chr9 109817691 109818011 -8044616 - AluSx SINE Alu -11 301 1 229 139 0 0 chr9 109818402 109818438 -8044189 - Alu SINE Alu -264 36 1 480 249 193 25 chr9 109818718 109818915 -8043712 + MIR SINE MIR 27 256 -6 26 0 0 0 chr9 109819177 109819203 -8043424 + AT_rich Low_complexity Low_complexity 1 26 0 1156 207 0 31 chr9 109819234 109819461 -8043166 - AluJo SINE Alu -92 220 1 2330 105 0 0 chr9 109819597 109819903 -8042724 + AluSc SINE Alu 1 306 -3 201 174 0 22 chr9 109820260 109820306 -8042321 + G-rich Low_complexity Low_complexity 6 50 0 2478 59 0 0 chr9 109821523 109821811 -8040816 + AluY SINE Alu 1 288 -23 1142 134 6 12 chr9 109821912 109822083 -8040544 - AluSx SINE Alu -142 170 1 1111 50 0 0 chr9 109822264 109822404 -8040223 + L1P LINE L1 2479 2618 -3528 2378 99 7 0 chr9 109822511 109822815 -8039812 - AluSx SINE Alu -6 306 1 2218 127 0 0 chr9 109822894 109823193 -8039434 - AluSx SINE Alu -13 299 1 961 140 115 20 chr9 109823322 109823522 -8039105 + MER20 DNA MER1_type 1 219 0 2498 84 3 0 chr9 109823526 109823837 -8038790 + AluSx SINE Alu 1 312 0 2161 95 6 46 chr9 109824519 109824844 -8037783 - AluSq SINE Alu -1 312 1 2394 88 0 7 chr9 109825303 109825610 -8037017 + AluSx SINE Alu 6 310 -2 1780 159 10 27 chr9 109825746 109826047 -8036580 + AluJo SINE Alu 17 312 0 2346 114 0 0 chr9 109826049 109826357 -8036270 + AluSx SINE Alu 1 308 -4 2108 138 0 7 chr9 109826980 109827284 -8035343 - AluJb SINE Alu -10 302 1 1771 168 27 3 chr9 109827943 109828241 -8034386 + AluJb SINE Alu 1 305 -7 2453 62 0 10 chr9 109828243 109828533 -8034094 + AluY SINE Alu 1 287 -24 213 65 0 0 chr9 109828540 109828571 -8034056 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 1028 173 11 22 chr9 109828571 109828750 -8033877 + AluJb SINE Alu 135 311 -1 424 163 35 14 chr9 109828773 109828852 -8033775 + GA-rich Low_complexity Low_complexity 1 86 -58 2342 87 0 10 chr9 109828852 109829164 -8033463 + AluSc SINE Alu 1 309 0 424 163 35 14 chr9 109829164 109829225 -8033402 + GA-rich Low_complexity Low_complexity 86 144 0 201 74 0 0 chr9 109830144 109830171 -8032456 + (CA)n Simple_repeat Simple_repeat 2 28 0 2346 82 0 33 chr9 109831499 109831803 -8030824 - AluSx SINE Alu -18 294 1 1027 129 0 0 chr9 109832043 109832190 -8030437 - FRAM SINE Alu -10 166 20 216 0 0 0 chr9 109832397 109832421 -8030206 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 2306 92 0 0 chr9 109832425 109832708 -8029919 - AluY SINE Alu -28 283 1 515 125 0 12 chr9 109832887 109832967 -8029660 - MADE1 DNA Mariner -1 79 1 2268 102 0 23 chr9 109833809 109834112 -8028515 + AluSx SINE Alu 1 296 -16 272 246 232 0 chr9 109834137 109834275 -8028352 + L1ME LINE L1 5616 5785 -336 2291 88 10 7 chr9 109834372 109834666 -8027961 + AluSg SINE Alu 1 295 -15 24 0 0 29 chr9 109834789 109834802 -8027825 + AT_rich Low_complexity Low_complexity 1 13 -21 2095 125 3 3 chr9 109834802 109835099 -8027528 + AluSx SINE Alu 1 297 -15 24 0 0 29 chr9 109835099 109835120 -8027507 + AT_rich Low_complexity Low_complexity 13 34 0 860 129 0 0 chr9 109835912 109836028 -8026599 - AluSp/q SINE Alu -26 287 172 2259 108 0 0 chr9 109836028 109836325 -8026302 + AluSq SINE Alu 1 297 -16 585 256 97 96 chr9 109836562 109836840 -8025787 + L1MEd LINE L1 614 890 -5315 1774 178 0 20 chr9 109836840 109837144 -8025483 + AluJo SINE Alu 1 298 -14 585 256 97 96 chr9 109837144 109837533 -8025094 + L1MEd LINE L1 890 1282 -4923 228 67 0 0 chr9 109837533 109837563 -8025064 + (TA)n Simple_repeat Simple_repeat 2 31 0 2328 72 0 4 chr9 109837563 109837840 -8024787 - AluSc SINE Alu -27 282 7 2150 110 0 0 chr9 109838028 109838330 -8024297 + AluSx SINE Alu 1 302 0 1793 173 3 10 chr9 109838391 109838686 -8023941 - AluJb SINE Alu -19 293 1 2238 120 7 0 chr9 109838710 109839019 -8023608 + AluSx SINE Alu 1 311 -1 375 229 70 28 chr9 109839023 109839208 -8023419 + L1MEd LINE L1 1566 1738 -838 291 269 54 62 chr9 109839216 109839346 -8023281 + Charlie8 DNA MER1_type 151 279 -2138 859 119 0 0 chr9 109839805 109839914 -8022713 - FLAM_C SINE Alu -34 109 1 2349 106 0 0 chr9 109840306 109840608 -8022019 - AluSq SINE Alu -11 302 1 2391 82 0 3 chr9 109840632 109840937 -8021690 + AluY SINE Alu 1 304 -7 2373 81 0 0 chr9 109841188 109841484 -8021143 + AluSc SINE Alu 1 296 -13 259 267 123 20 chr9 109841604 109841750 -8020877 - MIR SINE MIR -53 209 49 212 167 106 30 chr9 109841831 109841897 -8020730 + MIR SINE MIR 183 253 -9 2009 147 0 3 chr9 109842813 109843112 -8019515 + AluSx SINE Alu 1 298 -14 22 0 0 0 chr9 109843121 109843143 -8019484 + AT_rich Low_complexity Low_complexity 1 22 0 2510 87 3 0 chr9 109844086 109844398 -8018229 + AluSq SINE Alu 1 313 0 2272 102 3 0 chr9 109844555 109844849 -8017778 - AluSp SINE Alu -18 295 1 24 0 0 0 chr9 109844904 109844928 -8017699 + AT_rich Low_complexity Low_complexity 1 24 0 1658 164 59 11 chr9 109844934 109845221 -8017406 + AluJo SINE Alu 1 301 -11 1167 139 0 0 chr9 109845284 109845457 -8017170 - AluSg/x SINE Alu -4 306 134 2264 117 7 0 chr9 109845459 109845768 -8016859 - AluSq SINE Alu -2 311 1 657 188 23 0 chr9 109846507 109846635 -8015992 + BC200 scRNA scRNA 1 131 -69 191 59 0 29 chr9 109846635 109846669 -8015958 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1894 144 3 20 chr9 109847725 109847888 -8014739 - AluJb SINE Alu -16 296 139 2063 112 51 7 chr9 109847888 109848184 -8014443 - AluSx SINE Alu -3 309 1 1894 144 3 20 chr9 109848184 109848319 -8014308 - AluJb SINE Alu -173 139 3 1656 193 0 11 chr9 109848346 109848672 -8013955 - AluJb SINE Alu 0 323 1 2220 128 0 0 chr9 109848837 109849143 -8013484 + AluSx SINE Alu 1 306 -6 2106 120 27 0 chr9 109849145 109849446 -8013181 + AluSx SINE Alu 1 309 -3 272 318 88 11 chr9 109849447 109849721 -8012906 + L1M4 LINE L1 2209 2503 -3643 294 348 72 0 chr9 109849749 109849887 -8012740 - MIR SINE MIR -10 252 105 579 301 51 59 chr9 109849988 109850132 -8012495 + L1M4 LINE L1 2676 2820 -3326 2035 117 3 17 chr9 109850132 109850451 -8012176 + AluSx SINE Alu 2 316 0 579 301 51 59 chr9 109850451 109850851 -8011776 + L1M4 LINE L1 2820 3216 -2930 355 226 265 10 chr9 109850851 109850953 -8011674 + FLAM_A SINE Alu 1 128 -5 579 301 51 59 chr9 109850953 109851187 -8011440 + L1M4 LINE L1 3216 3450 -2696 594 297 147 29 chr9 109851233 109851647 -8010980 + L1M4 LINE L1 3554 4065 -2081 2255 90 14 3 chr9 109851647 109851935 -8010692 + AluSq SINE Alu 6 296 -17 594 297 147 29 chr9 109851935 109852133 -8010494 + L1M4 LINE L1 4065 4238 -1908 1628 181 4 11 chr9 109852169 109852450 -8010177 - AluJb SINE Alu -20 292 14 27 0 0 0 chr9 109852463 109852490 -8010137 + AT_rich Low_complexity Low_complexity 1 27 0 1112 148 17 0 chr9 109852501 109852677 -8009950 + AluSg/x SINE Alu 131 309 -1 25 31 0 0 chr9 109852677 109852709 -8009918 + AT_rich Low_complexity Low_complexity 1 32 0 252 0 0 0 chr9 109852763 109852791 -8009836 + (CA)n Simple_repeat Simple_repeat 1 28 0 606 193 55 0 chr9 109852984 109853093 -8009534 - FLAM_A SINE Alu -18 115 1 25 0 0 0 chr9 109853102 109853127 -8009500 + AT_rich Low_complexity Low_complexity 1 25 0 2242 108 7 0 chr9 109853959 109854265 -8008362 - AluSq SINE Alu -5 308 1 1889 161 0 3 chr9 109854475 109854780 -8007847 - AluJb SINE Alu -8 304 1 2300 113 0 0 chr9 109855077 109855378 -8007249 + AluSx SINE Alu 1 301 -11 1803 162 3 19 chr9 109855626 109855941 -8006686 + AluJo SINE Alu 1 310 -2 994 158 13 13 chr9 109856078 109856236 -8006391 + AluJb SINE Alu 137 294 -18 2314 99 7 3 chr9 109856238 109856541 -8006086 + AluSg SINE Alu 1 304 -6 1653 181 112 45 chr9 109856605 109857052 -8005575 - L1MB8 LINE L1 0 6178 5702 2017 101 0 24 chr9 109857054 109857341 -8005286 + AluSg SINE Alu 31 310 0 233 219 219 0 chr9 109857466 109857589 -8005038 - L2 LINE L2 -372 2942 2793 758 284 88 60 chr9 109857657 109857958 -8004669 - L2 LINE L2 -684 2630 2310 2211 103 3 19 chr9 109857958 109858269 -8004358 + AluSx SINE Alu 1 306 -6 758 284 88 60 chr9 109858269 109858421 -8004206 - L2 LINE L2 -1004 2310 2164 2149 87 0 58 chr9 109858502 109858813 -8003814 - AluSx SINE Alu -19 293 1 843 266 103 33 chr9 109858887 109859312 -8003315 + LTR33 LTR ERVL 47 501 -20 2202 111 13 7 chr9 109860544 109860842 -8001785 - AluSx SINE Alu -12 300 1 183 42 0 0 chr9 109861363 109861387 -8001240 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 691 116 0 0 chr9 109862510 109862605 -8000022 + AluJb SINE Alu 23 117 -195 243 146 0 0 chr9 109862611 109862652 -7999975 + (CA)n Simple_repeat Simple_repeat 2 42 0 614 121 8 24 chr9 109862662 109862786 -7999841 + (GGAA)n Simple_repeat Simple_repeat 3 124 0 355 279 129 43 chr9 109863038 109863374 -7999253 - L2 LINE L2 -188 3125 2730 2181 102 0 14 chr9 109863374 109863692 -7998935 + AluSx SINE Alu 1 314 0 355 279 129 43 chr9 109863692 109863748 -7998879 - L2 LINE L2 -583 2730 2680 605 272 22 59 chr9 109863837 109864161 -7998466 - L2 LINE L2 -656 2658 2347 2090 106 7 0 chr9 109864161 109864454 -7998173 + AluSx SINE Alu 1 295 -17 185 286 0 20 chr9 109864557 109864606 -7998021 - L2 LINE L2 -983 2331 2284 488 162 0 76 chr9 109864802 109864907 -7997720 - FLAM_A SINE Alu -18 124 28 2491 88 0 0 chr9 109865040 109865345 -7997282 + AluSq SINE Alu 1 305 -8 236 238 20 139 chr9 109866221 109866372 -7996255 + L1ME LINE L1 5586 5718 -403 845 127 8 15 chr9 109866555 109866689 -7995938 + FLAM_C SINE Alu 1 133 0 2269 86 0 54 chr9 109866817 109867132 -7995495 - AluY SINE Alu -13 298 1 2151 123 3 0 chr9 109867132 109867433 -7995194 - AluSx SINE Alu -10 302 1 2036 105 3 25 chr9 109867808 109868118 -7994509 - AluSg SINE Alu 0 304 1 2331 113 0 0 chr9 109868314 109868614 -7994013 - AluSx SINE Alu -8 304 5 2182 120 0 13 chr9 109869056 109869365 -7993262 - AluSx SINE Alu -7 305 1 2119 125 0 0 chr9 109869452 109869740 -7992887 - AluSx SINE Alu -5 307 20 184 307 107 13 chr9 109870159 109870234 -7992393 + MIR SINE MIR 6 87 -175 2417 60 3 13 chr9 109870400 109870730 -7991897 - AluY SINE Alu 0 311 1 2174 107 6 41 chr9 109870732 109871049 -7991578 - AluSx SINE Alu -6 306 1 354 78 0 0 chr9 109871340 109871391 -7991236 - Alu SINE Alu -251 51 1 1858 192 13 0 chr9 109871505 109871813 -7990814 + AluJo SINE Alu 1 312 0 2158 117 0 0 chr9 109871864 109872154 -7990473 + AluSx SINE Alu 1 290 -22 2284 113 0 3 chr9 109872551 109872852 -7989775 + AluSx SINE Alu 5 304 -8 1113 182 9 36 chr9 109873104 109873329 -7989298 - MER20 DNA MER1_type 0 219 1 1944 104 38 10 chr9 109873811 109874100 -7988527 + AluSq SINE Alu 1 297 -16 2213 130 0 0 chr9 109874412 109874719 -7987908 - AluSq SINE Alu -6 307 1 2347 102 0 0 chr9 109874941 109875246 -7987381 - AluSg SINE Alu -5 305 1 2232 114 0 10 chr9 109876572 109876870 -7985757 - AluSx SINE Alu -17 295 1 2371 77 7 3 chr9 109877006 109877305 -7985322 + AluSp SINE Alu 1 300 -13 2660 56 0 0 chr9 109877697 109878001 -7984626 + AluY SINE Alu 1 304 -7 1963 100 4 4 chr9 109878014 109878283 -7984344 - AluSq SINE Alu -11 302 34 182 278 19 0 chr9 109878678 109878732 -7983895 + L3b LINE CR1 1522 1576 -7 2464 97 0 0 chr9 109879118 109879428 -7983199 + AluSg SINE Alu 1 310 0 1945 159 0 13 chr9 109879580 109879889 -7982738 - AluJo SINE Alu -5 307 3 2190 102 27 0 chr9 109880469 109880763 -7981864 + AluSg SINE Alu 4 305 -5 237 231 55 47 chr9 109880936 109881061 -7981566 + MER5A DNA MER1_type 3 139 -48 23 0 0 0 chr9 109881193 109881216 -7981411 + AT_rich Low_complexity Low_complexity 1 23 0 2894 53 3 8 chr9 109881558 109881914 -7980713 + THE1A LTR MaLR 2 355 0 473 308 85 14 chr9 109882214 109882288 -7980339 - MIR SINE MIR -35 227 160 180 0 0 0 chr9 109882288 109882308 -7980319 + (ATG)n Simple_repeat Simple_repeat 2 21 0 473 308 85 14 chr9 109882308 109882444 -7980183 - MIR SINE MIR -102 160 2 1970 114 20 47 chr9 109882467 109882607 -7980020 + AluSx SINE Alu 1 143 -169 2268 108 7 3 chr9 109882607 109882914 -7979713 + AluSq SINE Alu 1 308 -5 1970 114 20 47 chr9 109882914 109883072 -7979555 + AluSx SINE Alu 143 291 -21 813 246 157 34 chr9 109883404 109883437 -7979190 + HAL1b LINE L1 89 117 -1231 2454 73 0 16 chr9 109883437 109883751 -7978876 + AluSc SINE Alu 1 309 0 813 246 157 34 chr9 109883751 109884157 -7978470 + HAL1b LINE L1 117 582 -766 226 244 56 22 chr9 109884212 109884302 -7978325 + HAL1b LINE L1 670 762 -586 334 270 128 28 chr9 109884345 109884481 -7978146 + HAL1b LINE L1 857 1023 -325 1450 105 190 16 chr9 109884481 109884728 -7977899 - AluSg1 SINE Alu -19 290 1 334 270 128 28 chr9 109884728 109884802 -7977825 + HAL1b LINE L1 1023 1088 -260 401 256 79 15 chr9 109884889 109885106 -7977521 + L1MC/D LINE L1 5311 5541 -858 353 102 102 0 chr9 109885140 109885199 -7977428 + Alu SINE Alu 231 295 -6 864 187 56 35 chr9 109885274 109885324 -7977303 - MER58A DNA MER1_type -2196 224 176 2321 112 0 0 chr9 109885324 109885620 -7977007 + AluSg SINE Alu 1 296 -14 864 187 56 35 chr9 109885620 109885767 -7976860 - MER58A DNA MER1_type -2244 176 23 188 203 203 0 chr9 109885935 109885994 -7976633 + L2 LINE L2 2871 2941 -331 502 168 35 84 chr9 109886392 109886535 -7976092 - L2 LINE L2 0 3313 3178 1453 116 43 47 chr9 109886566 109886685 -7975942 + L1MA8 LINE L1 5995 6113 -178 1718 150 47 0 chr9 109886685 109886959 -7975668 + AluJb SINE Alu 2 288 -24 213 39 0 0 chr9 109886959 109886985 -7975642 + (GGGGA)n Simple_repeat Simple_repeat 4 29 0 1453 116 43 47 chr9 109886985 109887140 -7975487 + L1MA8 LINE L1 6111 6269 -22 1729 231 66 106 chr9 109887287 109887860 -7974767 - L2 LINE L2 -290 3023 2428 1843 108 4 8 chr9 109887860 109888111 -7974516 - AluSx SINE Alu -11 301 52 1729 231 66 106 chr9 109888111 109888203 -7974424 - L2 LINE L2 -885 2428 2334 1806 158 20 7 chr9 109888203 109888495 -7974132 - AluJo SINE Alu -16 296 1 1729 231 66 106 chr9 109888495 109888582 -7974045 - L2 LINE L2 -979 2334 2245 2456 86 0 0 chr9 109888582 109888886 -7973741 - AluY SINE Alu -7 304 1 1729 231 66 106 chr9 109888886 109889125 -7973502 - L2 LINE L2 -1068 2245 2074 257 114 0 0 chr9 109889399 109889434 -7973193 + Alu SINE Alu 1 35 -265 2458 86 0 0 chr9 109889477 109889779 -7972848 - AluSg SINE Alu -8 302 1 2242 108 7 0 chr9 109890167 109890473 -7972154 - AluSq SINE Alu -5 308 1 1889 161 0 3 chr9 109890683 109890988 -7971639 - AluJb SINE Alu -8 304 1 2300 113 0 0 chr9 109891285 109891586 -7971041 + AluSx SINE Alu 1 301 -11 1780 165 3 19 chr9 109891834 109892149 -7970478 + AluJo SINE Alu 1 310 -2 970 165 13 13 chr9 109892286 109892444 -7970183 + AluJb SINE Alu 137 294 -18 2328 96 7 3 chr9 109892446 109892749 -7969878 + AluSg SINE Alu 1 304 -6 1653 181 112 45 chr9 109892813 109893260 -7969367 - L1MB8 LINE L1 0 6178 5702 2017 101 0 24 chr9 109893262 109893549 -7969078 + AluSg SINE Alu 31 310 0 233 219 219 0 chr9 109893674 109893797 -7968830 - L2 LINE L2 -372 2942 2793 554 300 121 24 chr9 109893865 109894162 -7968465 - L2 LINE L2 -684 2630 2305 2357 96 6 6 chr9 109894166 109894478 -7968149 + AluSx SINE Alu 1 312 0 725 126 0 17 chr9 109894718 109894837 -7967790 - FLAM_C SINE Alu -16 117 1 2384 93 0 0 chr9 109894846 109895146 -7967481 - AluSx SINE Alu -12 300 1 2220 245 43 18 chr9 109895178 109895803 -7966824 + L1ME3A LINE L1 5525 6165 -5 191 267 100 0 chr9 109896647 109896737 -7965890 - L2 LINE L2 -1 3271 3173 277 175 88 88 chr9 109896783 109896863 -7965764 + AluJo SINE Alu 87 166 -136 264 200 17 50 chr9 109896846 109896906 -7965721 + AluSp/q SINE Alu 236 293 -10 * 1778 168 20 3 chr9 109897912 109898216 -7964411 - AluJb SINE Alu -3 309 1 2076 120 3 14 chr9 109898264 109898555 -7964072 + AluSx SINE Alu 1 288 -24 21 0 0 0 chr9 109898604 109898625 -7964002 + AT_rich Low_complexity Low_complexity 1 21 0 1055 151 0 12 chr9 109898917 109899089 -7963538 + FRAM SINE Alu 1 165 -11 2067 136 0 29 chr9 109899126 109899442 -7963185 + AluSx SINE Alu 1 307 -5 2144 102 3 35 chr9 109899443 109899756 -7962871 + AluSq SINE Alu 1 303 -10 4577 170 40 43 chr9 109900495 109900535 -7962092 - Charlie1a DNA MER1_type -1328 1433 1394 2085 124 0 10 chr9 109900535 109900834 -7961793 + AluSx SINE Alu 1 296 -16 4577 170 40 43 chr9 109900834 109901430 -7961197 - Charlie1a DNA MER1_type -1367 1394 799 2123 128 0 25 chr9 109901430 109901750 -7960877 + AluSx SINE Alu 1 312 0 4577 170 40 43 chr9 109901750 109902108 -7960519 - Charlie1a DNA MER1_type -1962 799 441 1510 221 50 36 chr9 109902138 109902273 -7960354 - Charlie1a DNA MER1_type -2393 368 236 1829 103 80 4 chr9 109902273 109902562 -7960065 + AluSg SINE Alu 1 309 0 1510 221 50 36 chr9 109902562 109902787 -7959840 - Charlie1a DNA MER1_type -2525 236 2 2208 95 16 23 chr9 109902821 109902963 -7959664 + AluSx SINE Alu 1 142 -170 2244 98 3 20 chr9 109902963 109903269 -7959358 + AluSx SINE Alu 1 301 -11 2208 95 16 23 chr9 109903269 109903430 -7959197 + AluSx SINE Alu 142 302 -10 1942 206 34 12 chr9 109903534 109903952 -7958675 + MSTB1 LTR MaLR 1 427 -5 1072 90 0 8 chr9 109904397 109904531 -7958096 + AluSg SINE Alu 1 133 -177 1793 161 0 46 chr9 109904531 109904855 -7957772 + AluSx SINE Alu 1 309 -3 2376 72 0 3 chr9 109904863 109905156 -7957471 + AluY SINE Alu 1 292 -19 1171 131 0 0 chr9 109905338 109905498 -7957129 + AluSg SINE Alu 135 294 -16 2394 88 10 0 chr9 109906005 109906310 -7956317 + AluSx SINE Alu 1 308 -4 1162 123 0 0 chr9 109906311 109906466 -7956161 + AluSg/x SINE Alu 135 289 -21 2402 87 0 0 chr9 109906563 109906862 -7955765 - AluY SINE Alu -12 299 1 2206 114 0 13 chr9 109907382 109907518 -7955109 + AluSx SINE Alu 1 137 -175 1678 112 0 0 chr9 109907518 109907742 -7954885 + AluSc SINE Alu 83 306 -3 2206 114 0 13 chr9 109907742 109907913 -7954714 + AluSx SINE Alu 137 304 -8 2084 129 6 25 chr9 109908173 109908491 -7954136 + AluJb SINE Alu 1 312 0 2140 89 68 0 chr9 109908956 109909236 -7953391 + AluSx SINE Alu 1 299 -13 1763 135 10 33 chr9 109909285 109909589 -7953038 + AluJb SINE Alu 2 298 -14 1991 116 9 57 chr9 109910601 109910742 -7951885 + AluSx SINE Alu 1 147 -165 2235 116 0 3 chr9 109910742 109911045 -7951582 + AluSc SINE Alu 1 302 -7 1991 116 9 57 chr9 109911045 109911221 -7951406 + AluSx SINE Alu 147 303 -9 227 316 26 0 chr9 109911553 109911629 -7950998 + MLT1L LTR MaLR 200 277 -338 1050 120 0 0 chr9 109911637 109911779 -7950848 - AluSq/x SINE Alu -170 142 1 615 230 11 51 chr9 109911819 109911997 -7950630 + MLT1L LTR MaLR 418 588 -27 202 278 28 0 chr9 109912024 109912096 -7950531 - L2 LINE L2 -8 3305 3232 1414 85 0 0 chr9 109912288 109912465 -7950162 + AluY SINE Alu 133 309 -2 251 28 28 0 chr9 109912465 109912501 -7950126 + (TA)n Simple_repeat Simple_repeat 2 38 0 817 258 68 35 chr9 109912501 109912611 -7950016 + L1ME LINE L1 4375 4480 -1666 1707 183 30 35 chr9 109912611 109912978 -7949649 + MLT1A1 LTR MaLR 1 365 0 817 258 68 35 chr9 109912978 109913324 -7949303 + L1ME LINE L1 4480 4846 -1300 625 277 74 0 chr9 109913367 109913598 -7949029 + MIR SINE MIR 8 255 -7 210 118 0 0 chr9 109913601 109913635 -7948992 + (CAT)n Simple_repeat Simple_repeat 2 35 0 902 266 26 50 chr9 109913637 109913845 -7948782 + L1ME LINE L1 4882 5093 -1053 252 0 0 0 chr9 109913845 109913873 -7948754 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 2236 92 0 3 chr9 109913877 109914160 -7948467 - AluSg SINE Alu -28 282 1 902 266 26 50 chr9 109914160 109914363 -7948264 + L1ME LINE L1 5096 5288 -858 935 136 0 0 chr9 109914369 109914501 -7948126 - FLAM_C SINE Alu -11 132 1 811 223 166 57 chr9 109914511 109914914 -7947713 + L1ME LINE L1 5295 5741 -421 1319 185 152 1 chr9 109914914 109915242 -7947385 + MSTD LTR MaLR 1 396 0 2398 109 0 0 chr9 109915461 109915773 -7946854 - AluSx SINE Alu 0 312 1 471 264 16 8 chr9 109916374 109916499 -7946128 - L2 LINE L2 0 3313 3188 1739 144 0 19 chr9 109916876 109917163 -7945464 - AluJb SINE Alu 0 312 34 327 297 52 19 chr9 109917163 109917310 -7945317 - L1M LINE L1 -702 5419 5265 21 0 0 0 chr9 109917351 109917372 -7945255 + AT_rich Low_complexity Low_complexity 1 21 0 879 162 3 25 chr9 109917372 109917534 -7945093 + MLT1A1 LTR MaLR 1 151 -220 2350 95 3 0 chr9 109917683 109917987 -7944640 + AluSp SINE Alu 1 305 -8 287 211 70 0 chr9 109918098 109918169 -7944458 - L2 LINE L2 -37 3276 3201 713 172 0 23 chr9 109918185 109918313 -7944314 + FLAM_C SINE Alu 1 125 -8 2158 122 7 0 chr9 109918769 109919063 -7943564 + AluSx SINE Alu 1 296 -16 189 0 0 0 chr9 109919093 109919114 -7943513 + (T)n Simple_repeat Simple_repeat 1 21 0 2472 76 0 3 chr9 109919134 109919435 -7943192 - AluY SINE Alu -11 300 1 359 149 0 0 chr9 109919498 109919565 -7943062 - L1MB3 LINE L1 -19 6164 6098 274 224 147 35 chr9 109919566 109919682 -7942945 - MIR SINE MIR -105 157 29 328 93 37 37 chr9 109919775 109919863 -7942764 - Alu SINE Alu 0 315 228 653 164 0 0 chr9 109919863 109919967 -7942660 - AluSq/x SINE Alu -207 105 2 1644 167 7 25 chr9 109920168 109920450 -7942177 + AluSx SINE Alu 1 277 -35 716 75 0 0 chr9 109920450 109920544 -7942083 + AluSc SINE Alu 205 298 -11 354 158 0 0 chr9 109920981 109921038 -7941589 - Alu SINE Alu 0 302 246 * 396 0 0 0 chr9 109921036 109921083 -7941544 - AluY SINE Alu -255 47 1 2189 109 0 7 chr9 109921431 109921735 -7940892 - AluSx SINE Alu -10 302 1 1997 139 10 0 chr9 109923096 109923384 -7939243 - AluJb SINE Alu -21 291 1 253 100 0 0 chr9 109923395 109923435 -7939192 - L1MB5 LINE L1 -1 6173 6134 2333 91 3 7 chr9 109923435 109923732 -7938895 - AluSx SINE Alu -16 296 1 1057 151 0 64 chr9 109923895 109924113 -7938514 - AluJb SINE Alu -19 293 90 693 145 26 0 chr9 109924113 109924230 -7938397 + FLAM_C SINE Alu 24 143 0 1343 115 48 147 chr9 109925349 109925661 -7936966 + AluJo SINE Alu 1 281 -31 2391 81 0 0 chr9 109926134 109926417 -7936210 + AluSx SINE Alu 11 293 -19 240 274 42 42 chr9 109926746 109926841 -7935786 - L3 LINE CR1 -20 1557 1463 2439 84 0 0 chr9 109926868 109927166 -7935461 + AluSx SINE Alu 1 298 -14 645 232 113 0 chr9 109927235 109927403 -7935224 - MIR SINE MIR -74 188 2 2159 126 3 0 chr9 109927439 109927740 -7934887 + AluSx SINE Alu 1 302 -10 1907 137 3 45 chr9 109927897 109928210 -7934417 + AluJb SINE Alu 1 300 -12 1368 244 81 38 chr9 109928757 109929154 -7933473 - MLT1G1 LTR MaLR 0 595 182 351 233 27 0 chr9 109929162 109929235 -7933392 - FLAM SINE Alu -16 117 43 916 188 0 48 chr9 109929296 109929482 -7933145 - MLT1G1 LTR MaLR -418 177 1 419 271 162 46 chr9 109930061 109930362 -7932265 + L2 LINE L2 2234 3281 -32 1418 162 162 0 chr9 109930381 109930640 -7931987 - AluJb SINE Alu -1 301 1 1776 160 0 0 chr9 109930928 109931196 -7931431 + AluJo SINE Alu 1 268 -44 2378 97 0 0 chr9 109931379 109931678 -7930949 + AluSx SINE Alu 1 299 -13 2169 106 0 7 chr9 109932877 109933187 -7929440 - AluSg SINE Alu 0 308 1 1915 162 0 13 chr9 109933393 109933696 -7928931 - AluJo SINE Alu -13 299 1 948 197 25 121 chr9 109934781 109934936 -7927691 + AluYb8 SINE Alu 1 169 -149 2202 75 0 78 chr9 109934936 109935258 -7927369 + AluY SINE Alu 1 297 -14 2248 90 28 0 chr9 109935266 109935555 -7927072 + AluY SINE Alu 1 297 -14 948 197 25 121 chr9 109935555 109935705 -7926922 + AluYb8 SINE Alu 176 285 -33 1739 144 0 8 chr9 109936101 109936357 -7926270 + AluJb SINE Alu 12 265 -47 276 356 88 12 chr9 109936500 109936660 -7925967 + LTR16B LTR ERVL 104 275 -189 326 293 10 0 chr9 109936748 109936847 -7925780 + MIR SINE MIR 151 250 -12 2470 80 3 0 chr9 109936890 109937192 -7925435 + AluSq SINE Alu 1 303 -10 2518 63 0 0 chr9 109937989 109938289 -7924338 + AluY SINE Alu 1 300 -11 2081 117 20 10 chr9 109938300 109938599 -7924028 + AluSx SINE Alu 1 302 -10 584 115 58 29 chr9 109938880 109938984 -7923643 + L1MC1 LINE L1 6227 6333 0 251 218 0 0 chr9 109939099 109939154 -7923473 - L2 LINE L2 0 3313 3259 2518 40 0 17 chr9 109939298 109939600 -7923027 + AluY SINE Alu 1 297 -14 2254 77 7 13 chr9 109939625 109939924 -7922703 - AluSg1 SINE Alu -12 297 1 2222 119 0 3 chr9 109940620 109940923 -7921704 + AluSq SINE Alu 3 304 -9 2062 99 0 20 chr9 109941568 109941870 -7920757 + AluSx SINE Alu 7 302 -10 426 220 118 21 chr9 109942005 109942191 -7920436 - L1MC5 LINE L1 -33 7928 7725 722 164 8 15 chr9 109942228 109942362 -7920265 - FLAM_C SINE Alu 0 133 1 22 56 0 0 chr9 109943678 109943714 -7918913 + GC_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr9 109944410 109944439 -7918188 + GC_rich Low_complexity Low_complexity 1 29 0 33 56 0 0 chr9 109944502 109944556 -7918071 + GC_rich Low_complexity Low_complexity 1 54 0 1754 148 0 17 chr9 109945569 109945859 -7916768 + AluJo SINE Alu 3 287 -25 2129 94 7 3 chr9 109945879 109946176 -7916451 + AluSx SINE Alu 1 298 -14 2824 211 82 61 chr9 109947293 109947677 -7914950 + MER21B LTR ERV1 1 407 -456 1914 99 0 122 chr9 109947677 109948021 -7914606 + AluSx SINE Alu 1 302 0 2824 211 82 61 chr9 109948021 109948322 -7914305 + MER21B LTR ERV1 407 700 -163 420 178 19 37 chr9 109948324 109948431 -7914196 + AluJb SINE Alu 201 305 -7 586 265 34 14 chr9 109948432 109948558 -7914069 + MER21B LTR ERV1 711 842 -21 2193 112 0 0 chr9 109948558 109948862 -7913765 + AluSg SINE Alu 1 304 -6 586 265 34 14 chr9 109948862 109948882 -7913745 + MER21B LTR ERV1 842 860 -3 428 302 34 20 chr9 109949152 109949263 -7913364 + MIR SINE MIR 41 156 -106 2059 112 16 0 chr9 109949263 109949568 -7913059 + AluSx SINE Alu 1 310 -2 428 302 34 20 chr9 109949568 109949605 -7913022 + MIR SINE MIR 156 191 -71 378 287 100 52 chr9 109949614 109949712 -7912915 + MIR SINE MIR 16 108 -154 2338 48 31 0 chr9 109949712 109950003 -7912624 - AluY SINE Alu -11 300 1 2297 57 3 3 chr9 109950006 109950304 -7912323 - AluY SINE Alu -13 298 1 378 287 100 52 chr9 109950304 109950332 -7912295 + MIR SINE MIR 109 134 -128 1541 189 34 0 chr9 109950332 109950628 -7911999 + AluJb SINE Alu 1 306 -6 378 287 100 52 chr9 109950628 109950667 -7911960 + MIR SINE MIR 134 170 -92 1567 161 49 3 chr9 109950667 109950953 -7911674 + AluJb SINE Alu 11 309 -3 378 287 100 52 chr9 109950953 109951011 -7911616 + MIR SINE MIR 170 256 -6 765 141 118 0 chr9 109951099 109951234 -7911393 - FRAM SINE Alu -6 170 20 842 145 44 101 chr9 109951874 109952102 -7910525 - AluJo SINE Alu -13 299 85 2124 122 0 0 chr9 109952130 109952426 -7910201 - AluSx SINE Alu -16 296 1 930 96 7 0 chr9 109952426 109952561 -7910066 - AluJb SINE Alu -176 136 1 22 0 0 0 chr9 109952670 109952692 -7909935 + AT_rich Low_complexity Low_complexity 1 22 0 1647 170 27 0 chr9 109952761 109953061 -7909566 + AluSx SINE Alu 3 310 -2 1865 120 3 17 chr9 109953663 109953962 -7908665 - AluSx SINE Alu -17 295 1 2187 81 0 7 chr9 109954058 109954353 -7908274 + AluSx SINE Alu 1 293 -19 438 236 159 42 chr9 109954439 109954657 -7907970 + MIR SINE MIR 8 259 -3 1478 157 33 43 chr9 109956025 109956325 -7906302 + AluJb SINE Alu 3 299 -13 1673 67 13 9 chr9 109956412 109956636 -7905991 + AluY SINE Alu 1 225 -86 1118 43 0 0 chr9 109956636 109956774 -7905853 + AluYa5 SINE Alu 164 301 -10 1948 109 3 11 chr9 109956889 109957201 -7905426 + AluSx SINE Alu 1 310 0 2147 110 7 0 chr9 109957396 109957706 -7904921 + AluSx SINE Alu 1 312 0 1319 86 99 59 chr9 109957716 109957870 -7904757 + MER30 DNA MER1_type 1 168 -62 2293 78 0 0 chr9 109957870 109958163 -7904464 + AluY SINE Alu 1 293 -18 1319 86 99 59 chr9 109958163 109958229 -7904398 + MER30 DNA MER1_type 168 230 0 1261 183 35 67 chr9 109958417 109958729 -7903898 + AluJo SINE Alu 1 302 0 463 228 40 0 chr9 109958754 109958855 -7903772 - L1MC5 LINE L1 -48 7913 7809 25 0 0 0 chr9 109958878 109958903 -7903724 + AT_rich Low_complexity Low_complexity 1 25 0 2144 113 7 0 chr9 109959027 109959336 -7903291 - AluSx SINE Alu -1 311 1 21 36 0 0 chr9 109959336 109959364 -7903263 + AT_rich Low_complexity Low_complexity 1 28 0 2870 228 25 25 chr9 109959392 109959670 -7902957 - L1MB7 LINE L1 -1 6183 5906 2085 119 0 0 chr9 109959670 109959972 -7902655 - AluSx SINE Alu -10 302 1 2870 228 25 25 chr9 109959972 109960408 -7902219 - L1MB7 LINE L1 -277 5907 5469 429 259 108 48 chr9 109960391 109960417 -7902210 - L1MC5 LINE L1 -174 7787 7764 * 1914 127 13 3 chr9 109960417 109960717 -7901910 + AluSx SINE Alu 1 303 -9 429 259 108 48 chr9 109960717 109960941 -7901686 - L1MC5 LINE L1 -197 7764 7522 2149 115 3 3 chr9 109960941 109961246 -7901381 - AluSq SINE Alu -7 306 2 2002 111 0 0 chr9 109961291 109961570 -7901057 - AluSx SINE Alu -33 279 1 984 202 12 0 chr9 109961617 109961790 -7900837 - FAM SINE Alu 0 175 1 763 287 139 36 chr9 109962303 109962721 -7899906 - L2 LINE L2 -2 3311 2851 264 172 78 31 chr9 109962801 109962865 -7899762 - L2 LINE L2 -221 3051 2985 1987 116 7 10 chr9 109962868 109963161 -7899466 + AluSx SINE Alu 1 292 -20 338 210 86 0 chr9 109963245 109963326 -7899301 + MIR SINE MIR 119 206 -56 2023 99 11 7 chr9 109963339 109963672 -7898955 + AluSx SINE Alu 1 334 0 280 130 87 0 chr9 109963703 109963749 -7898878 - L2 LINE L2 -1 3312 3263 567 94 0 0 chr9 109963812 109963908 -7898719 + (CCTG)n Simple_repeat Simple_repeat 2 97 0 1293 167 0 45 chr9 109963930 109964194 -7898433 - AluJo SINE Alu -16 296 45 2326 78 0 0 chr9 109964405 109964698 -7897929 - AluY SINE Alu -18 293 1 30 45 0 0 chr9 109964707 109964751 -7897876 + AT_rich Low_complexity Low_complexity 1 44 0 1879 133 13 26 chr9 109965012 109965321 -7897306 - AluSx SINE Alu -7 305 1 2797 6 0 9 chr9 109965389 109965708 -7896919 - AluYb8 SINE Alu -2 316 1 1570 232 74 11 chr9 109965831 109966266 -7896361 + MLT1C LTR MaLR 6 467 0 2058 85 51 3 chr9 109966377 109966672 -7895955 + AluSq SINE Alu 1 309 -4 1963 138 0 3 chr9 109966692 109966997 -7895630 + AluSx SINE Alu 1 304 -8 2093 107 27 0 chr9 109967232 109967531 -7895096 + AluSq SINE Alu 1 307 -6 297 75 0 0 chr9 109967593 109967633 -7894994 + (ATG)n Simple_repeat Simple_repeat 2 41 0 2480 34 0 3 chr9 109967911 109968207 -7894420 + AluY SINE Alu 1 295 -16 297 353 78 13 chr9 109968484 109968637 -7893990 - MIR SINE MIR 0 262 100 1893 136 24 0 chr9 109968960 109969247 -7893380 - AluSx SINE Alu -18 294 1 235 200 230 40 chr9 109969561 109969661 -7892966 - Charlie8 DNA MER1_type -2262 155 37 1820 129 24 17 chr9 109969952 109970247 -7892380 - AluSx SINE Alu -15 297 1 580 302 86 9 chr9 109970277 109970499 -7892128 + MIR SINE MIR 3 241 -21 2062 127 10 0 chr9 109970882 109971190 -7891437 - AluSx SINE Alu -1 311 1 1461 167 24 27 chr9 109971197 109971490 -7891137 - AluJb SINE Alu 0 312 21 1945 143 0 0 chr9 109971511 109971812 -7890815 - AluSx SINE Alu -11 301 1 1575 182 10 7 chr9 109971919 109972227 -7890400 - AluJo SINE Alu -3 309 1 1567 168 43 16 chr9 109972232 109972536 -7890091 - AluJb SINE Alu 0 312 1 186 334 85 19 chr9 109972651 109972854 -7889773 + MIR SINE MIR 45 261 -1 2003 113 0 3 chr9 109972858 109973182 -7889445 - AluSq SINE Alu 0 335 13 1576 117 26 94 chr9 109973197 109973416 -7889211 - AluSx SINE Alu -25 287 93 2297 67 6 10 chr9 109973416 109973728 -7888899 - AluY SINE Alu 0 311 1 1576 117 26 94 chr9 109973728 109973816 -7888811 - AluSx SINE Alu -219 93 1 339 273 39 78 chr9 109974109 109974340 -7888287 - L1ME3A LINE L1 -10 6160 5939 732 188 76 46 chr9 109974437 109974634 -7887993 + MER105 DNA DNA 1 203 -1 233 289 36 24 chr9 109974700 109974783 -7887844 - L1ME LINE L1 -5984 86 3 * 451 279 77 100 chr9 109974754 109974953 -7887674 + L1MEd LINE L1 51 253 -5866 2196 96 3 6 chr9 109974953 109975266 -7887361 - AluSx SINE Alu 0 312 1 451 279 77 100 chr9 109975266 109975586 -7887041 + L1MEd LINE L1 253 558 -5561 282 274 78 29 chr9 109976117 109976219 -7886408 - L2 LINE L2 -16 3256 3150 2232 98 0 13 chr9 109976439 109976755 -7885872 - AluSx SINE Alu 0 312 1 2309 78 0 0 chr9 109976994 109977289 -7885338 - AluSg1 SINE Alu -14 295 1 1418 160 20 8 chr9 109977771 109978021 -7884606 - AluJb SINE Alu -59 253 1 2169 93 7 0 chr9 109978091 109978391 -7884236 - AluSq SINE Alu -7 306 5 460 308 184 23 chr9 109978655 109978954 -7883673 - L2 LINE L2 -16 3256 2910 257 241 250 18 chr9 109978950 109979062 -7883565 + MIR SINE MIR 48 185 -77 * 2434 57 0 0 chr9 109979093 109979390 -7883237 + AluY SINE Alu 1 297 -14 424 317 92 12 chr9 109979696 109979945 -7882682 - MLT1L LTR MaLR 0 615 347 2070 113 0 13 chr9 109980172 109980472 -7882155 - AluSx SINE Alu -16 296 1 592 298 66 0 chr9 109980576 109980757 -7881870 + MIR SINE MIR 2 194 -68 613 283 79 72 chr9 109981339 109981681 -7880946 - L1ME3A LINE L1 -338 5783 5433 2443 32 0 0 chr9 109981681 109982000 -7880627 - AluY SINE Alu 0 319 1 613 283 79 72 chr9 109982000 109982101 -7880526 - L1ME3A LINE L1 -688 5433 5334 1463 182 35 18 chr9 109982137 109982423 -7880204 + AluJb SINE Alu 1 291 -21 1925 124 0 40 chr9 109982465 109982601 -7880026 + AluSx SINE Alu 1 141 -171 2291 91 0 3 chr9 109982601 109982908 -7879719 + AluSc SINE Alu 1 306 -3 1925 124 0 40 chr9 109982908 109983069 -7879558 + AluSx SINE Alu 141 286 -26 2179 129 36 25 chr9 109983105 109983470 -7879157 - MSTB LTR MaLR -56 370 2 2357 63 7 7 chr9 109983684 109983987 -7878640 - AluY SINE Alu -8 303 1 2149 113 0 0 chr9 109984136 109984429 -7878198 - AluSx SINE Alu -19 293 1 194 150 25 0 chr9 109984852 109984892 -7877735 + (TG)n Simple_repeat Simple_repeat 2 42 0 220 205 0 0 chr9 109984896 109984935 -7877692 + (CATA)n Simple_repeat Simple_repeat 4 42 0 1335 164 0 0 chr9 109984935 109985142 -7877485 + MER2 DNA MER2_type 1 207 -138 24 85 0 0 chr9 109985143 109985202 -7877425 + AT_rich Low_complexity Low_complexity 1 59 0 319 232 13 0 chr9 109985239 109985313 -7877314 - L1MC4 LINE L1 -1320 7002 2008 2094 112 10 10 chr9 109985333 109985636 -7876991 + AluSx SINE Alu 1 303 -9 1879 157 7 0 chr9 109985711 109986016 -7876611 + AluJb SINE Alu 1 307 -5 422 176 221 0 chr9 109986638 109986723 -7875904 - L1MA10 LINE L1 0 6334 6250 679 178 199 24 chr9 109986723 109986971 -7875656 - L1ME2 LINE L1 -104 6060 5765 2076 100 32 23 chr9 109986971 109987280 -7875347 - AluSx SINE Alu 0 312 1 679 178 199 24 chr9 109987280 109987300 -7875327 - L1ME2 LINE L1 -399 5765 5750 228 267 173 47 chr9 109987828 109987978 -7874649 - MIR SINE MIR -57 205 37 215 185 25 111 chr9 109988229 109988266 -7874361 + MIR SINE MIR 71 99 -109 1911 166 0 0 chr9 109988266 109988568 -7874059 - AluJo SINE Alu -10 302 1 215 185 25 111 chr9 109988568 109988611 -7874016 + MIR SINE MIR 99 144 -64 928 90 23 8 chr9 109988616 109988749 -7873878 + AluJb SINE Alu 1 135 -177 1682 169 0 16 chr9 109988749 109989056 -7873571 + AluJb SINE Alu 1 302 -10 446 195 190 46 chr9 109989063 109989237 -7873390 - L1ME2 LINE L1 -30 6134 5936 704 263 220 16 chr9 109989328 109989768 -7872859 + L2 LINE L2 2725 3246 -67 702 219 127 19 chr9 109989822 109990027 -7872600 - MIR SINE MIR -34 228 2 1804 88 54 61 chr9 109990119 109990413 -7872214 + AluSg SINE Alu 1 292 -18 22 35 0 0 chr9 109990864 109990893 -7871734 + AT_rich Low_complexity Low_complexity 1 29 0 364 216 156 48 chr9 109991108 109991275 -7871352 - L1ME3A LINE L1 0 6170 5986 1807 172 31 3 chr9 109992439 109992730 -7869897 + AluJb SINE Alu 1 299 -13 2235 101 0 44 chr9 109992760 109992929 -7869698 - AluSq SINE Alu -11 302 152 2333 107 0 0 chr9 109992929 109993227 -7869400 - AluSg SINE Alu -12 298 1 2235 101 0 44 chr9 109993227 109993373 -7869254 - AluSq SINE Alu -161 152 1 2217 100 0 13 chr9 109993853 109994152 -7868475 - AluY SINE Alu -16 295 1 767 151 0 0 chr9 109994937 109995043 -7867584 + AluJo SINE Alu 6 111 -201 1874 152 7 23 chr9 109995045 109995348 -7867279 - AluSx SINE Alu -14 298 1 2118 73 0 0 chr9 109995396 109995644 -7866983 + AluY SINE Alu 1 248 -63 985 212 0 0 chr9 109995644 109995823 -7866804 + AluJo SINE Alu 121 299 -13 2229 102 0 0 chr9 109995885 109996214 -7866413 - AluSx SINE Alu 0 329 1 180 97 0 0 chr9 109996221 109996252 -7866375 + (T)n Simple_repeat Simple_repeat 1 31 0 208 313 130 23 chr9 109996282 109996413 -7866214 + MIR SINE MIR 20 164 -98 2185 124 0 0 chr9 109996625 109996924 -7865703 - AluSc SINE Alu -8 301 3 270 206 346 0 chr9 109997145 109997252 -7865375 - MIR3 SINE MIR -23 185 42 2203 83 38 0 chr9 109997702 109997991 -7864636 - AluSx SINE Alu -12 300 1 2273 128 0 0 chr9 109998376 109998688 -7863939 - AluSx SINE Alu 0 312 1 420 258 114 45 chr9 109998693 109998933 -7863694 - L1MC/D LINE L1 -585 5581 5338 1085 154 12 0 chr9 109998943 109999105 -7863522 - AluJo/FRAM SINE Alu -13 299 136 1914 156 3 26 chr9 109999108 109999415 -7863212 - AluJb SINE Alu -12 300 1 1919 151 0 20 chr9 109999959 110000258 -7862369 + AluSx SINE Alu 1 293 -19 1469 171 43 53 chr9 110000263 110000562 -7862065 + AluJo SINE Alu 1 296 -16 2646 55 0 3 chr9 110001116 110001428 -7861199 - AluY SINE Alu 0 311 1 1801 175 6 22 chr9 110004009 110004324 -7858303 - AluJo SINE Alu -2 310 1 924 257 142 42 chr9 110005028 110005506 -7857121 - MLT1H1 LTR MaLR 0 555 30 217 266 142 35 chr9 110005866 110005979 -7856648 + MER5A DNA MER1_type 38 162 -27 2188 107 0 26 chr9 110006482 110006790 -7855837 - AluSq SINE Alu -13 300 1 1255 141 54 0 chr9 110007006 110007191 -7855436 - AluJb SINE Alu -115 197 3 2366 82 0 0 chr9 110007550 110007856 -7854771 + AluSc SINE Alu 1 306 0 256 192 0 0 chr9 110009575 110009627 -7853000 - L1ME4a LINE L1 -5 6116 6065 1448 89 0 0 chr9 110010223 110010403 -7852224 - AluSq SINE Alu -3 310 131 2134 139 0 0 chr9 110010410 110010704 -7851923 - AluSx SINE Alu -18 294 1 2329 101 0 3 chr9 110010795 110011102 -7851525 - AluSg SINE Alu -4 306 1 810 153 0 53 chr9 110012240 110012390 -7850237 - FLAM_C SINE Alu -1 142 1 829 145 0 36 chr9 110012417 110012555 -7850072 + FLAM_C SINE Alu 1 133 -10 1382 166 0 5 chr9 110012563 110012786 -7849841 + AluJb SINE Alu 82 303 -9 273 103 0 0 chr9 110013567 110013606 -7849021 + Charlie1 DNA MER1_type 55 93 -2668 3709 214 105 34 chr9 110013624 110013971 -7848656 + Charlie1 DNA MER1_type 1426 1747 -1014 2019 176 0 0 chr9 110013971 110014283 -7848344 - AluJb SINE Alu 0 312 1 3709 214 105 34 chr9 110014283 110014479 -7848148 + Charlie1 DNA MER1_type 1747 1928 -833 1782 144 53 0 chr9 110014479 110014764 -7847863 - AluJb SINE Alu -12 300 1 3709 214 105 34 chr9 110014764 110015320 -7847307 + Charlie1 DNA MER1_type 1928 2443 -318 2234 121 0 0 chr9 110015320 110015609 -7847018 + AluSx SINE Alu 1 289 -23 3709 214 105 34 chr9 110015609 110015632 -7846995 + Charlie1 DNA MER1_type 2443 2463 -298 1635 194 11 11 chr9 110015632 110015915 -7846712 - AluJo SINE Alu -25 287 5 3709 214 105 34 chr9 110015915 110016036 -7846591 + Charlie1 DNA MER1_type 2463 2761 0 309 221 0 15 chr9 110016695 110016716 -7845911 + AluSg/x SINE Alu 113 133 -169 2323 86 10 7 chr9 110016716 110017019 -7845608 + AluY SINE Alu 1 304 -7 309 221 0 15 chr9 110017019 110017065 -7845562 + AluSg/x SINE Alu 133 179 -123 546 100 0 0 chr9 110017065 110017135 -7845492 - AluJ/FLAM SINE Alu -241 71 2 329 250 0 13 chr9 110018068 110018144 -7844483 - L1ME3 LINE L1 0 6162 6088 2364 104 0 0 chr9 110018182 110018480 -7844147 - AluSq SINE Alu -15 298 1 361 299 8 8 chr9 110019273 110019390 -7843237 + MIR SINE MIR 8 124 -138 232 296 56 0 chr9 110019973 110020044 -7842583 - MER5B DNA MER1_type -103 75 1 682 279 29 20 chr9 110020674 110020878 -7841749 - MIR SINE MIR -54 208 3 282 29 0 0 chr9 110021053 110021088 -7841539 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1173 168 151 13 chr9 110021091 110021329 -7841298 - AluJb SINE Alu -29 283 13 512 125 87 29 chr9 110022039 110022143 -7840484 + HY1 scRNA scRNA 1 110 -2 1294 186 103 8 chr9 110022163 110022456 -7840171 + AluJo SINE Alu 6 322 0 1346 58 117 19 chr9 110022470 110022675 -7839952 + MER30 DNA MER1_type 6 230 0 2540 74 0 3 chr9 110023112 110023424 -7839203 - AluY SINE Alu 0 311 1 317 304 95 32 chr9 110023806 110023964 -7838663 + L2 LINE L2 3104 3271 -1 1756 122 111 0 chr9 110023974 110024245 -7838382 + AluJb SINE Alu 1 301 -11 802 225 16 11 chr9 110024268 110024444 -7838183 - AluJb SINE Alu -1 311 132 2213 120 0 0 chr9 110024444 110024735 -7837892 - AluSg1 SINE Alu -18 291 1 802 225 16 11 chr9 110024735 110024749 -7837878 - AluJb SINE Alu -180 132 120 734 147 0 0 chr9 110024759 110024868 -7837759 - FLAM_A SINE Alu 0 142 34 794 130 7 65 chr9 110024893 110025031 -7837596 - AluJ SINE Alu -172 130 1 515 179 54 18 chr9 110025782 110025894 -7836733 + MER63 DNA MER1_type 10 751 -311 2068 114 62 0 chr9 110026324 110026614 -7836013 - AluSx SINE Alu -4 308 1 690 152 7 58 chr9 110026634 110026772 -7835855 - FLAM_A SINE Alu -2 131 1 620 60 12 0 chr9 110026827 110026911 -7835716 - Alu SINE Alu -4 307 223 2318 75 0 33 chr9 110027001 110027306 -7835321 + AluSc SINE Alu 1 295 -14 2501 59 3 16 chr9 110027576 110027883 -7834744 - AluSp SINE Alu -10 303 1 209 171 0 0 chr9 110028006 110028041 -7834586 + CT-rich Low_complexity Low_complexity 1 35 0 2194 125 0 28 chr9 110028917 110029236 -7833391 - AluSx SINE Alu -2 310 1 2458 86 7 0 chr9 110031823 110032127 -7830500 + AluSq SINE Alu 1 306 -7 1764 153 0 14 chr9 110033133 110033408 -7829219 - AluJb SINE Alu -31 281 11 207 324 78 28 chr9 110033456 110033598 -7829029 + MER5B DNA MER1_type 28 176 -2 2244 119 3 0 chr9 110033738 110034040 -7828587 + AluSx SINE Alu 1 303 -9 246 116 0 0 chr9 110034040 110034083 -7828544 + (TA)n Simple_repeat Simple_repeat 2 44 0 377 278 9 28 chr9 110036051 110036159 -7826468 - MIR SINE MIR -128 134 29 470 152 7 46 chr9 110039638 110039789 -7822838 + C-rich Low_complexity Low_complexity 4 148 0 895 279 13 22 chr9 110041869 110042185 -7820442 - L1ME2 LINE L1 -3 6161 5849 296 167 0 0 chr9 110042266 110042320 -7820307 - MIR SINE MIR -119 89 36 2150 116 0 7 chr9 110042438 110042740 -7819887 + AluSx SINE Alu 1 300 -12 301 243 54 0 chr9 110043062 110043136 -7819491 - MER5A DNA MER1_type -106 83 6 189 328 33 0 chr9 110045320 110045381 -7817246 + L2 LINE L2 1942 2004 -1310 2237 75 31 3 chr9 110045620 110045914 -7816713 - AluSx SINE Alu -5 307 6 216 0 0 0 chr9 110045991 110046015 -7816612 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 381 297 84 26 chr9 110046075 110046230 -7816397 + L2 LINE L2 2541 2704 -610 1739 184 65 28 chr9 110046277 110046682 -7815945 + L1MB8 LINE L1 4296 4726 -1420 1687 121 101 0 chr9 110046682 110046963 -7815664 - AluSx SINE Alu 0 307 1 1739 184 65 28 chr9 110046963 110047061 -7815566 + L1MB8 LINE L1 4726 4819 -1327 804 156 47 0 chr9 110047071 110047199 -7815428 - FAM SINE Alu -46 139 6 189 0 0 0 chr9 110047206 110047227 -7815400 + (T)n Simple_repeat Simple_repeat 1 21 0 2232 85 3 3 chr9 110047271 110047566 -7815061 - AluSx SINE Alu -17 295 1 1013 165 109 30 chr9 110047566 110047832 -7814795 - L1MB2 LINE L1 -32 6139 5853 1694 165 4 0 chr9 110047834 110048107 -7814520 - AluJb SINE Alu -1 311 38 1433 213 25 18 chr9 110048107 110048501 -7814126 - L1MB2 LINE L1 -867 5279 4883 * 2721 162 37 146 chr9 110048497 110048851 -7813776 + L1MB8 LINE L1 5344 5735 -443 2188 115 3 6 chr9 110048851 110049164 -7813463 + AluSx SINE Alu 1 312 0 2721 162 37 146 chr9 110049164 110049662 -7812965 + L1MB8 LINE L1 5735 6286 108 1800 186 0 0 chr9 110049662 110049958 -7812669 - AluJb SINE Alu -16 296 1 2721 162 37 146 chr9 110049958 110049989 -7812638 + L1MB8 LINE L1 6286 6125 -53 1771 77 96 8 chr9 110049989 110050274 -7812353 + AluY SINE Alu 1 308 0 2721 162 37 146 chr9 110050274 110050324 -7812303 + L1MB8 LINE L1 6124 6178 0 299 347 37 16 chr9 110050346 110050536 -7812091 - L2 LINE L2 -161 3111 2918 2000 133 3 29 chr9 110050581 110050890 -7811737 - AluSx SINE Alu -11 301 1 901 251 83 71 chr9 110050932 110051399 -7811228 + MLT1K LTR MaLR 1 473 -3 4174 80 13 11 chr9 110051417 110051580 -7811047 - MER41A LTR ERV1 0 554 393 2222 88 0 0 chr9 110051580 110051906 -7810721 - AluSx SINE Alu 0 326 1 4174 80 13 11 chr9 110051906 110052294 -7810333 - MER41A LTR ERV1 -161 393 1 203 152 0 0 chr9 110052516 110052549 -7810078 + (CAGG)n Simple_repeat Simple_repeat 4 36 0 2281 100 3 0 chr9 110052640 110052941 -7809686 - AluSx SINE Alu -9 303 2 1598 169 60 24 chr9 110053697 110053894 -7808733 - MLT1A1 LTR MaLR 0 365 150 2154 125 0 0 chr9 110053894 110054191 -7808436 - AluSx SINE Alu -15 297 1 1598 169 60 24 chr9 110054191 110054325 -7808302 - MLT1A1 LTR MaLR -215 150 22 862 110 0 29 chr9 110054331 110054467 -7808160 + FLAM_C SINE Alu 11 142 -1 2257 103 0 10 chr9 110054469 110054781 -7807846 + AluSg SINE Alu 1 309 -1 2199 90 20 0 chr9 110055277 110055437 -7807190 - AluSx SINE Alu -7 305 135 2207 89 3 3 chr9 110055437 110055729 -7806898 - AluSc SINE Alu -8 301 10 2199 90 20 0 chr9 110055729 110055867 -7806760 - AluSx SINE Alu -177 135 1 1693 155 18 7 chr9 110055868 110056152 -7806475 - AluJo SINE Alu -10 302 16 2165 104 0 7 chr9 110056665 110056963 -7805664 - AluSq SINE Alu -16 297 2 274 332 173 31 chr9 110056979 110057205 -7805422 + MIR SINE MIR 5 262 0 1662 90 0 0 chr9 110057353 110057576 -7805051 - AluSg/x SINE Alu -5 305 83 359 253 178 27 chr9 110057582 110057728 -7804899 - MIR3 SINE MIR 0 208 41 209 204 37 0 chr9 110057860 110057914 -7804713 - L2 LINE L2 -55 3258 3203 289 259 0 35 chr9 110058259 110058344 -7804283 + MIR3 SINE MIR 125 206 -2 2194 110 0 0 chr9 110058835 110059136 -7803491 - AluSx SINE Alu -11 301 1 1336 109 0 0 chr9 110059813 110059988 -7802639 + AluSx SINE Alu 1 175 -137 437 163 0 0 chr9 110060302 110060382 -7802245 + AluSc SINE Alu 229 308 -1 636 238 113 68 chr9 110060728 110060988 -7801639 - MIR SINE MIR -6 256 1 2168 118 75 26 chr9 110061532 110061879 -7800748 - THE1B LTR MaLR 0 364 1 1281 174 18 126 chr9 110062046 110062380 -7800247 - AluJo SINE Alu -3 299 2 586 227 33 0 chr9 110062456 110062606 -7800021 + MER103 DNA DNA 12 166 0 774 177 23 0 chr9 110062749 110062879 -7799748 + AluJo/FLAM SINE Alu 1 133 -169 1228 79 9 3 chr9 110062879 110063108 -7799519 + AluY SINE Alu 1 309 -2 714 172 0 69 chr9 110063122 110063253 -7799374 + FLAM_A SINE Alu 7 129 -182 1886 164 10 3 chr9 110063253 110063558 -7799069 + AluJb SINE Alu 1 307 -5 714 172 0 69 chr9 110063558 110063571 -7799056 + FLAM_A SINE Alu 129 141 -170 2049 103 7 0 chr9 110063593 110063906 -7798721 - AluJb SINE Alu 0 315 1 1777 143 3 57 chr9 110063907 110064221 -7798406 - AluSq SINE Alu -16 297 1 2002 117 14 0 chr9 110064222 110064513 -7798114 - AluSq SINE Alu -16 297 3 2372 97 0 0 chr9 110064536 110064846 -7797781 - AluSg SINE Alu 0 310 1 1950 94 0 8 chr9 110064847 110065113 -7797514 - AluSx SINE Alu -15 297 34 1022 214 31 21 chr9 110065113 110065402 -7797225 - MER33 DNA MER1_type -32 292 1 786 92 0 0 chr9 110065717 110065826 -7796801 + AluY SINE Alu 203 311 0 2447 57 3 0 chr9 110065856 110066157 -7796470 - AluSp SINE Alu -11 302 1 218 363 15 52 chr9 110066333 110066468 -7796159 - L2 LINE L2 -954 2360 2231 528 120 0 0 chr9 110066586 110066686 -7795941 + (CCCTAA)n Simple_repeat Simple_repeat 1 100 0 200 365 48 48 chr9 110066748 110066893 -7795734 - MER5A DNA MER1_type -36 153 9 1917 161 3 3 chr9 110066954 110067265 -7795362 + AluJb SINE Alu 1 311 -1 2254 76 0 7 chr9 110067320 110067653 -7794974 + AluSx SINE Alu 3 333 0 296 168 115 18 chr9 110067655 110067768 -7794859 + L1MB7 LINE L1 6045 6168 -16 2070 109 0 3 chr9 110067956 110068262 -7794365 - AluSx SINE Alu 0 305 1 187 307 239 25 chr9 110068288 110068643 -7793984 + L2 LINE L2 2298 2728 -586 2311 103 0 0 chr9 110068671 110068981 -7793646 - AluSq SINE Alu -3 310 1 1010 256 195 5 chr9 110069268 110069698 -7792929 + L2 LINE L2 1985 2496 -818 276 332 86 31 chr9 110069986 110070278 -7792349 + L2 LINE L2 2505 2812 -502 255 273 172 53 chr9 110070489 110070537 -7792090 + L2 LINE L2 3080 3121 -192 2284 114 0 0 chr9 110070537 110070843 -7791784 - AluSg SINE Alu 0 310 5 255 273 172 53 chr9 110070843 110071003 -7791624 + L2 LINE L2 3121 3313 0 189 371 0 0 chr9 110071146 110071208 -7791419 + L2 LINE L2 3248 3309 -4 297 118 0 0 chr9 110071220 110071271 -7791356 + (TG)n Simple_repeat Simple_repeat 2 52 0 1794 146 17 14 chr9 110071271 110071553 -7791074 - AluJb SINE Alu -29 283 1 258 105 0 0 chr9 110071560 110071598 -7791029 + (TTCC)n Simple_repeat Simple_repeat 1 38 0 1616 193 20 3 chr9 110071598 110071629 -7790998 - AluJb SINE Alu -1 311 282 255 31 0 0 chr9 110071629 110071661 -7790966 + (TG)n Simple_repeat Simple_repeat 1 32 0 207 0 0 0 chr9 110071660 110071683 -7790944 + (GA)n Simple_repeat Simple_repeat 1 23 0 * 1616 193 20 3 chr9 110071661 110071957 -7790670 - AluJb SINE Alu -30 282 1 188 359 88 6 chr9 110072583 110072753 -7789874 - L2 LINE L2 -93 3220 3037 23 33 0 0 chr9 110073323 110073353 -7789274 + GC_rich Low_complexity Low_complexity 1 30 0 232 280 11 51 chr9 110073445 110073620 -7789007 + G-rich Low_complexity Low_complexity 5 172 0 246 154 35 63 chr9 110073652 110073795 -7788832 + (CCGCG)n Simple_repeat Simple_repeat 1 139 0 228 174 58 14 chr9 110073802 110073871 -7788756 + (CCCGG)n Simple_repeat Simple_repeat 1 72 0 23 0 0 0 chr9 110073871 110073894 -7788733 + GC_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr9 110074011 110074031 -7788596 + (CCCCCG)n Simple_repeat Simple_repeat 2 21 0 26 30 0 0 chr9 110074114 110074147 -7788480 + GC_rich Low_complexity Low_complexity 1 33 0 622 287 10 20 chr9 110075557 110075752 -7786875 - MIR SINE MIR -45 217 25 1672 75 184 4 chr9 110075786 110076041 -7786586 + AluSp SINE Alu 1 301 -12 429 297 45 7 chr9 110076612 110076767 -7785860 - MER5A DNA MER1_type -26 163 3 474 347 40 6 chr9 110077175 110077351 -7785276 + MIR SINE MIR 80 261 -1 1592 186 0 11 chr9 110077372 110077729 -7784898 - AluJo SINE Alu 0 354 1 269 253 177 0 chr9 110077960 110078039 -7784588 - L2 LINE L2 -18 3295 3203 247 206 0 32 chr9 110078908 110078971 -7783656 + MIR SINE MIR 74 134 -74 203 278 139 15 chr9 110079042 110079238 -7783389 + MIR SINE MIR 3 226 -36 866 144 0 15 chr9 110079266 110079398 -7783229 - FLAM_C SINE Alu -3 130 1 292 307 197 8 chr9 110079820 110080064 -7782563 - L2 LINE L2 -518 2796 2507 752 74 9 0 chr9 110080068 110080176 -7782451 + (TCCCC)n Simple_repeat Simple_repeat 5 113 0 2122 115 7 0 chr9 110080176 110080464 -7782163 - AluSx SINE Alu -20 292 3 860 267 61 61 chr9 110080536 110081011 -7781616 - L1ME4a LINE L1 -256 5865 5391 540 279 0 7 chr9 110081011 110081147 -7781480 - MIR3 SINE MIR -11 197 63 504 0 0 0 chr9 110081229 110081285 -7781342 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 1876 148 3 3 chr9 110081285 110081567 -7781060 - AluSx SINE Alu -27 285 1 217 371 21 10 chr9 110081829 110081926 -7780701 + MIR SINE MIR 50 147 -115 199 231 0 0 chr9 110081930 110081969 -7780658 + L2 LINE L2 3218 3256 -16 285 331 81 0 chr9 110082211 110082335 -7780292 + MIR SINE MIR 9 142 -120 278 272 48 48 chr9 110082443 110082546 -7780081 + MIR SINE MIR 89 191 -71 456 332 81 14 chr9 110082660 110082883 -7779744 - MIR SINE MIR -16 246 9 398 311 31 25 chr9 110083365 110083526 -7779101 - MIR SINE MIR -81 181 20 207 279 106 68 chr9 110083564 110083725 -7778902 + L3 LINE CR1 1401 1567 -10 248 260 180 0 chr9 110084378 110084478 -7778149 + MIR SINE MIR 20 137 -71 623 159 35 7 chr9 110084871 110085016 -7777611 + CT-rich Low_complexity Low_complexity 2 150 0 2396 78 0 3 chr9 110085033 110085342 -7777285 - AluY SINE Alu -2 309 2 237 174 69 39 chr9 110085372 110085468 -7777159 + MIR SINE MIR 16 122 -86 289 301 186 6 chr9 110085549 110085705 -7776922 + MIR SINE MIR 46 229 -33 1957 97 10 24 chr9 110085849 110086137 -7776490 - AluSg SINE Alu 0 310 27 508 51 0 101 chr9 110086139 110086218 -7776409 + Alu SINE Alu 223 293 -17 234 86 0 0 chr9 110086221 110086256 -7776371 - AluSg SINE Alu -265 35 1 409 356 85 16 chr9 110087365 110087612 -7775015 - L2 LINE L2 0 3272 3009 315 218 13 0 chr9 110087630 110087708 -7774919 - MER53 DNA DNA -106 83 5 197 360 13 0 chr9 110088191 110088266 -7774361 + MIR SINE MIR 97 172 -90 474 309 95 77 chr9 110089463 110089652 -7772975 + L2 LINE L2 2887 3071 -201 2124 68 51 10 chr9 110089652 110089944 -7772683 - AluSp SINE Alu -9 304 1 2063 131 3 3 chr9 110089944 110090250 -7772377 - AluSq SINE Alu -7 306 1 474 309 95 77 chr9 110090250 110090437 -7772190 + L2 LINE L2 3070 3271 -1 403 229 9 55 chr9 110090452 110090561 -7772066 - MIR SINE MIR -74 188 85 196 293 35 0 chr9 110090627 110090685 -7771942 + L2 LINE L2 3206 3265 -7 2208 88 0 53 chr9 110090793 110091113 -7771514 + AluSx SINE Alu 1 303 -9 270 0 0 0 chr9 110091113 110091143 -7771484 + (TA)n Simple_repeat Simple_repeat 2 31 0 297 0 0 0 chr9 110091266 110091299 -7771328 + (GA)n Simple_repeat Simple_repeat 2 34 0 258 311 111 44 chr9 110091408 110091543 -7771084 - L2 LINE L2 -3 3310 3167 455 244 89 8 chr9 110091650 110091773 -7770854 - MIR SINE MIR -93 169 37 279 287 28 28 chr9 110091961 110092069 -7770558 + MIR SINE MIR 22 129 -133 289 270 133 3 chr9 110094133 110094252 -7768375 - MIR3 SINE MIR -47 161 44 351 308 32 58 chr9 110095805 110095961 -7766666 - MIR SINE MIR -77 185 34 301 246 0 0 chr9 110096374 110096435 -7766192 - MIR SINE MIR -63 145 85 2059 103 28 0 chr9 110096665 110096955 -7765672 - AluSx SINE Alu -12 300 3 2078 102 13 20 chr9 110097690 110097995 -7764632 + AluSx SINE Alu 1 303 -9 866 270 36 7 chr9 110098118 110098396 -7764231 - L1MC4 LINE L1 -365 7677 7392 2117 115 3 10 chr9 110098914 110099218 -7763409 + AluSx SINE Alu 1 302 -10 237 312 72 80 chr9 110099763 110099888 -7762739 + MIR SINE MIR 59 182 -80 497 222 42 42 chr9 110099924 110100068 -7762559 - MIR SINE MIR -118 144 1 2242 113 0 0 chr9 110100316 110100626 -7762001 - AluY SINE Alu -1 310 1 207 297 14 81 chr9 110100699 110100847 -7761780 + MIR SINE MIR 8 145 -117 279 0 0 0 chr9 110101131 110101162 -7761465 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 308 341 7 22 chr9 110101294 110101429 -7761198 - MIR SINE MIR -57 205 73 242 284 27 0 chr9 110102538 110102612 -7760015 + MIR3 SINE MIR 85 160 -48 421 247 27 20 chr9 110102612 110102758 -7759869 + MER117 DNA MER1_type 1 147 -50 258 301 68 15 chr9 110103120 110103253 -7759374 + L2 LINE L2 2921 3060 -212 * 301 344 95 39 chr9 110103234 110103571 -7759056 + L2 LINE L2 2622 2977 -337 340 339 131 6 chr9 110103782 110103813 -7758814 - MIR SINE MIR -37 225 199 2182 107 0 7 chr9 110103813 110104113 -7758514 - AluSx SINE Alu -14 298 1 340 339 131 6 chr9 110104113 110104264 -7758363 - MIR SINE MIR -63 199 20 315 0 0 0 chr9 110104280 110104315 -7758312 + (TG)n Simple_repeat Simple_repeat 2 36 0 306 236 0 0 chr9 110104315 110104370 -7758257 + L1MC4 LINE L1 6648 6702 -1340 1498 127 138 19 chr9 110104370 110104638 -7757989 - AluSx SINE Alu -12 300 1 202 342 61 35 chr9 110104976 110105090 -7757537 - MIR SINE MIR -29 233 117 33 0 0 23 chr9 110105202 110105223 -7757404 + AT_rich Low_complexity Low_complexity 1 21 -22 2023 99 0 14 chr9 110105223 110105507 -7757120 - AluSx SINE Alu -9 303 24 33 0 0 23 chr9 110105507 110105529 -7757098 + AT_rich Low_complexity Low_complexity 21 43 0 1451 197 17 17 chr9 110105529 110105819 -7756808 - AluJo SINE Alu -19 293 4 732 286 6 0 chr9 110105822 110106000 -7756627 + MIR SINE MIR 48 226 -36 263 309 63 8 chr9 110106018 110106144 -7756483 - MIR SINE MIR -33 229 97 * 516 331 53 8 chr9 110106143 110106541 -7756086 - L2 LINE L2 -1 3271 2854 858 142 71 0 chr9 110106648 110106789 -7755838 + FRAM SINE Alu 18 168 -8 1738 167 20 7 chr9 110106791 110107091 -7755536 + AluJo SINE Alu 3 306 -6 270 152 0 0 chr9 110107311 110107357 -7755270 - MER117 DNA MER1_type -33 164 119 2281 112 0 3 chr9 110107630 110107943 -7754684 - AluSx SINE Alu 0 312 1 469 322 192 16 chr9 110108265 110108779 -7753848 + L2 LINE L2 2471 3067 -246 235 250 33 0 chr9 110108842 110108902 -7753725 - MIR SINE MIR -104 104 43 2082 77 31 3 chr9 110109522 110109808 -7752819 - AluSq SINE Alu -19 294 1 376 154 15 0 chr9 110110043 110110108 -7752519 - MIR SINE MIR -62 146 81 184 368 44 26 chr9 110110606 110110720 -7751907 - MIR3 SINE MIR -79 129 14 * 249 281 16 0 chr9 110110719 110110783 -7751844 - L2 LINE L2 0 3313 3249 2271 112 0 0 chr9 110111352 110111657 -7750970 + AluSg SINE Alu 1 305 -5 305 303 40 0 chr9 110111902 110112001 -7750626 - MIR SINE MIR -61 147 45 1818 156 0 43 chr9 110112060 110112386 -7750241 - AluJo SINE Alu 0 312 1 264 279 12 23 chr9 110112953 110113039 -7749588 - L2 LINE L2 -17 3255 3171 445 257 16 45 chr9 110113514 110113675 -7748952 - MIR SINE MIR -62 146 25 2397 66 3 3 chr9 110114283 110114587 -7748040 - AluY SINE Alu -7 304 1 2029 116 24 0 chr9 110114593 110114887 -7747740 - AluSx SINE Alu -11 301 1 265 306 113 68 chr9 110115038 110115303 -7747324 - L2 LINE L2 0 3272 2996 1201 210 104 29 chr9 110115311 110115725 -7746902 - MER31B LTR ERV1 0 466 22 268 242 16 0 chr9 110116601 110116663 -7745964 + MIR3 SINE MIR 93 155 -53 244 210 49 5 chr9 110117468 110117556 -7745071 + MIR SINE MIR 53 145 -63 2391 74 0 0 chr9 110117563 110117861 -7744766 + AluSx SINE Alu 1 298 -14 405 272 30 52 chr9 110118153 110118318 -7744309 - MIR SINE MIR -44 218 54 312 161 173 12 chr9 110118727 110118808 -7743819 - MIR SINE MIR -57 151 58 372 381 6 3 chr9 110119207 110119568 -7743059 + (CA)n Simple_repeat Simple_repeat 1 362 0 397 323 44 27 chr9 110119956 110120102 -7742525 - MIR3 SINE MIR -32 176 25 209 353 15 0 chr9 110120634 110120702 -7741925 - L2 LINE L2 -10 3303 3235 180 0 0 0 chr9 110121271 110121291 -7741336 + (T)n Simple_repeat Simple_repeat 1 20 0 337 278 112 57 chr9 110121326 110121765 -7740862 - L1ME LINE L1 -375 5746 5284 2350 106 0 0 chr9 110121803 110122115 -7740512 - AluSx SINE Alu 0 312 1 991 171 6 6 chr9 110122536 110122712 -7739915 + FRAM SINE Alu 1 40 0 497 137 0 0 chr9 110122714 110122816 -7739811 + L1MC3 LINE L1 7583 7684 -101 1032 181 45 0 chr9 110122816 110122993 -7739634 - AluJo SINE Alu -127 185 1 4961 189 50 50 chr9 110122993 110124322 -7738305 - L1MC3 LINE L1 -198 7587 6259 2089 142 0 0 chr9 110124352 110124655 -7737972 - AluSx SINE Alu -9 303 1 1701 155 3 47 chr9 110124655 110124972 -7737655 - AluJo SINE Alu -9 303 1 1230 316 74 83 chr9 110124992 110125602 -7737025 - L1ME LINE L1 -1441 4705 4091 2201 123 0 0 chr9 110125602 110125912 -7736715 - AluSx SINE Alu -2 310 1 1230 316 74 83 chr9 110125912 110126168 -7736459 - L1ME LINE L1 -2055 4091 3845 2217 103 0 10 chr9 110126168 110126470 -7736157 - AluSx SINE Alu -13 299 1 1230 316 74 83 chr9 110126470 110126522 -7736105 - L1ME LINE L1 -2301 3845 3794 282 247 0 0 chr9 110126638 110126715 -7735912 + (CCCA)n Simple_repeat Simple_repeat 4 80 0 708 227 0 0 chr9 110126721 110126897 -7735730 + (TCCA)n Simple_repeat Simple_repeat 3 178 0 249 246 0 0 chr9 110126917 110126982 -7735645 + (TCCA)n Simple_repeat Simple_repeat 1 65 0 410 314 25 8 chr9 110126985 110127103 -7735524 - L2 LINE L2 0 3272 3153 280 315 135 0 chr9 110127135 110127246 -7735381 - MIR SINE MIR -18 244 119 2201 85 0 20 chr9 110128747 110129041 -7733586 - AluSg SINE Alu -20 290 3 296 227 27 0 chr9 110129353 110129428 -7733199 - MIR SINE MIR -79 183 107 388 297 95 7 chr9 110131819 110131967 -7730660 - L3b LINE CR1 -111 1472 1312 294 292 97 0 chr9 110132199 110132343 -7730284 + MER117 DNA MER1_type 1 158 -39 210 250 36 0 chr9 110133028 110133084 -7729543 + MIR SINE MIR 107 164 -98 290 188 31 16 chr9 110133287 110133351 -7729276 + MIR SINE MIR 58 122 -86 191 36 36 0 chr9 110133673 110133701 -7728926 + (TCCC)n Simple_repeat Simple_repeat 2 30 0 372 311 233 21 chr9 110133701 110134074 -7728553 - L2 LINE L2 -7 3306 2855 1349 140 0 5 chr9 110134571 110134778 -7727849 - AluSx SINE Alu -106 206 1 1703 194 18 23 chr9 110135263 110135655 -7726972 + L1MB3 LINE L1 5794 6183 0 23 0 0 0 chr9 110135655 110135678 -7726949 + AT_rich Low_complexity Low_complexity 1 23 0 2131 134 0 3 chr9 110135753 110136066 -7726561 + AluSx SINE Alu 1 312 0 991 226 46 0 chr9 110136745 110136984 -7725643 - MLT1F1 LTR MaLR 0 567 318 483 286 9 31 chr9 110137099 110137326 -7725301 + L1M4 LINE L1 5058 5279 -867 1694 165 4 0 chr9 110137326 110137599 -7725028 + AluJb SINE Alu 38 311 -1 1013 165 109 30 chr9 110137601 110137867 -7724760 + L1MB2 LINE L1 5853 6139 -32 2341 70 3 3 chr9 110137867 110138166 -7724461 + AluY SINE Alu 1 299 -12 1542 70 31 31 chr9 110138177 110138406 -7724221 + L1MA2 LINE L1 6076 6304 0 516 271 12 24 chr9 110138408 110138574 -7724053 - L1M4 LINE L1 -1286 4860 4697 553 267 28 59 chr9 110138594 110138849 -7723778 - MLT1L LTR MaLR -366 249 3 256 191 0 0 chr9 110139883 110139930 -7722697 + MIR SINE MIR 103 149 -59 2320 93 0 0 chr9 110140119 110140421 -7722206 - AluSx SINE Alu -10 302 1 2053 102 3 7 chr9 110140906 110141201 -7721426 + AluSq SINE Alu 13 306 -7 277 208 42 14 chr9 110141634 110141706 -7720921 - MLT1K LTR MaLR -3 585 512 816 139 0 0 chr9 110141708 110141823 -7720804 + FLAM_C SINE Alu 1 115 -18 392 190 155 7 chr9 110141861 110142003 -7720624 - L1M4 LINE L1 -2509 3637 3475 1595 199 3 10 chr9 110142071 110142368 -7720259 - AluJb SINE Alu -17 295 1 1295 241 83 5 chr9 110142368 110143133 -7719494 - L1M4 LINE L1 -2655 3491 2554 2236 101 16 0 chr9 110143380 110143687 -7718940 - AluSx SINE Alu 0 312 1 1756 191 0 3 chr9 110143897 110144196 -7718431 - AluJo SINE Alu -14 298 1 1033 54 8 0 chr9 110144751 110144880 -7717747 + AluSq/x SINE Alu 1 130 -183 185 272 185 25 chr9 110144984 110145065 -7717562 + MIR SINE MIR 149 242 -20 252 254 70 18 chr9 110145375 110145489 -7717138 + L2 LINE L2 2933 3052 -220 1996 126 3 10 chr9 110145598 110145908 -7716719 - AluJb SINE Alu -4 308 1 2237 114 0 0 chr9 110146163 110146471 -7716156 - AluSx SINE Alu -4 308 1 372 301 84 14 chr9 110147335 110147478 -7715149 - MLT1J LTR MaLR -3 508 356 622 178 0 9 chr9 110147549 110147656 -7714971 - MLT1J LTR MaLR -336 175 70 2018 124 3 26 chr9 110149006 110149313 -7713314 - AluSx SINE Alu -12 300 1 644 162 0 10 chr9 110149336 110149435 -7713192 - FLAM_C SINE Alu -22 121 24 2165 110 0 0 chr9 110150867 110151168 -7711459 - AluSx SINE Alu -11 301 1 1317 109 0 0 chr9 110151845 110152020 -7710607 + AluSx SINE Alu 1 175 -137 444 163 0 0 chr9 110152334 110152414 -7710213 + AluSc SINE Alu 229 308 -1 642 232 149 31 chr9 110152810 110153004 -7709623 - MIR SINE MIR -45 217 1 2176 118 75 26 chr9 110153564 110153911 -7708716 - THE1B LTR MaLR 0 364 1 1258 174 18 126 chr9 110154078 110154412 -7708215 - AluJo SINE Alu -3 299 2 622 227 33 0 chr9 110154488 110154638 -7707989 + MER103 DNA DNA 12 166 0 769 177 23 0 chr9 110154781 110154911 -7707716 + AluJo/FLAM SINE Alu 1 133 -169 1344 43 4 12 chr9 110154913 110155145 -7707482 + AluY SINE Alu 2 310 -1 1962 175 36 16 chr9 110155155 110155556 -7707071 - MLT1D LTR MaLR -74 393 2 2066 130 0 0 chr9 110155643 110155943 -7706684 + AluSx SINE Alu 1 300 -12 197 174 0 22 chr9 110155967 110156013 -7706614 - MIR SINE MIR -58 150 106 2263 81 3 10 chr9 110156106 110156404 -7706223 + AluSg SINE Alu 11 306 -4 2392 80 6 0 chr9 110156414 110156725 -7705902 + AluSp SINE Alu 1 313 0 2429 81 0 0 chr9 110156871 110157181 -7705446 + AluSg SINE Alu 1 310 0 1900 124 14 3 chr9 110157204 110157495 -7705132 + AluSq SINE Alu 3 296 -17 1703 144 6 58 chr9 110157497 110157810 -7704817 + AluSq SINE Alu 1 297 -16 350 204 45 23 chr9 110157811 110157899 -7704728 + AluJ/FLAM SINE Alu 1 90 -212 460 214 311 0 chr9 110158366 110158604 -7704023 - L2 LINE L2 -1018 2296 1985 2283 103 0 0 chr9 110158891 110159201 -7703426 + AluSq SINE Alu 1 310 -3 210 294 120 0 chr9 110159229 110159321 -7703306 - L2 LINE L2 -586 2728 2626 204 339 103 0 chr9 110159419 110159584 -7703043 - L2 LINE L2 -835 2479 2298 1957 117 3 3 chr9 110159610 110159915 -7702712 + AluSx SINE Alu 1 305 0 323 168 115 18 chr9 110160103 110160216 -7702411 - L1MB7 LINE L1 -16 6168 6045 344 22 22 0 chr9 110160218 110160263 -7702364 + (TTTTA)n Simple_repeat Simple_repeat 2 47 0 2236 76 0 7 chr9 110160263 110160552 -7702075 - AluSx SINE Alu -24 288 2 235 174 69 39 chr9 110160582 110160678 -7701949 + MIR SINE MIR 16 122 -86 260 301 186 6 chr9 110160759 110160915 -7701712 + MIR SINE MIR 46 229 -33 1939 97 10 24 chr9 110161059 110161347 -7701280 - AluSg SINE Alu 0 310 27 509 51 0 101 chr9 110161349 110161428 -7701199 + Alu SINE Alu 224 294 -17 252 86 0 0 chr9 110161431 110161466 -7701161 - AluSg SINE Alu -267 35 1 360 356 85 16 chr9 110162575 110162822 -7699805 - L2 LINE L2 0 3272 3009 331 218 13 0 chr9 110162840 110162918 -7699709 - MER53 DNA DNA -106 83 5 405 358 59 5 chr9 110163762 110163983 -7698644 + MIR SINE MIR 10 242 -20 2347 85 7 0 chr9 110165000 110165306 -7697321 + AluSg SINE Alu 3 310 0 249 263 18 0 chr9 110165491 110165548 -7697079 + CT-rich Low_complexity Low_complexity 3 60 0 1257 269 14 6 chr9 110165611 110165968 -7696659 - L1ME LINE L1 -468 5702 5343 607 212 147 109 chr9 110165972 110166428 -7696199 - MLT1F LTR MaLR -4 563 123 1407 176 51 61 chr9 110166428 110166614 -7696013 - AluJb SINE Alu -2 310 127 180 27 81 0 chr9 110166614 110166651 -7695976 + T-rich Low_complexity Low_complexity 3 42 0 1407 176 51 61 chr9 110166651 110166777 -7695850 - AluJb SINE Alu -185 127 1 410 288 16 0 chr9 110166777 110166902 -7695725 - L1ME LINE L1 -2294 3852 3726 2117 137 0 9 chr9 110166908 110167223 -7695404 - AluSx SINE Alu 0 312 1 21 36 0 0 chr9 110167506 110167534 -7695093 + AT_rich Low_complexity Low_complexity 1 28 0 2145 131 0 0 chr9 110167703 110168016 -7694611 - AluSq SINE Alu 0 313 1 1491 187 11 59 chr9 110168016 110168266 -7694361 - L1MC/D LINE L1 -499 5675 5415 1891 157 0 6 chr9 110168266 110168579 -7694048 - AluSx SINE Alu -1 311 1 1491 187 11 59 chr9 110168579 110168623 -7694004 - L1MC/D LINE L1 -759 5415 5069 379 257 157 100 chr9 110168623 110168833 -7693794 - L1ME4a LINE L1 -260 5861 5664 2187 92 0 22 chr9 110168833 110169149 -7693478 + AluSg SINE Alu 1 309 -1 379 257 157 100 chr9 110169149 110169218 -7693409 - L1ME4a LINE L1 -457 5664 5314 21 71 0 0 chr9 110169946 110169988 -7692639 + AT_rich Low_complexity Low_complexity 1 42 0 354 306 84 3 chr9 110170756 110170916 -7691711 + MIR3 SINE MIR 30 202 -6 21 0 0 0 chr9 110172881 110172902 -7689725 + AT_rich Low_complexity Low_complexity 1 21 0 227 371 7 15 chr9 110173111 110173261 -7689366 + MIR SINE MIR 47 190 -61 2255 103 3 0 chr9 110173838 110174150 -7688477 + AluSq SINE Alu 1 313 0 762 235 11 21 chr9 110174341 110174528 -7688099 - MER5A DNA MER1_type 0 189 5 183 314 57 0 chr9 110175348 110175418 -7687209 + MIR SINE MIR 2 75 -187 1712 85 70 0 chr9 110175473 110175731 -7686896 + AluY SINE Alu 1 276 -35 580 216 8 8 chr9 110175834 110175959 -7686668 - AluSq/x SINE Alu -174 138 14 464 281 62 12 chr9 110175998 110176158 -7686469 + L1M4 LINE L1 4881 5048 -1098 444 278 16 8 chr9 110176295 110176421 -7686206 + MLT1L LTR MaLR 489 615 0 304 336 18 9 chr9 110176665 110176775 -7685852 + L2 LINE L2 3162 3272 0 1163 155 40 61 chr9 110177020 110177221 -7685406 - AluJo SINE Alu -7 305 110 2610 100 3 42 chr9 110177221 110177434 -7685193 - THE1B LTR MaLR 0 364 170 2025 111 0 17 chr9 110177434 110177754 -7684873 + AluSx SINE Alu 1 315 0 2610 100 3 42 chr9 110177754 110177918 -7684709 - THE1B LTR MaLR -194 170 1 1163 155 40 61 chr9 110177918 110177993 -7684634 - AluJo SINE Alu -202 110 35 300 314 95 0 chr9 110178123 110178228 -7684399 + L1ME4a LINE L1 5923 6037 -84 2148 99 3 0 chr9 110178228 110178520 -7684107 + AluSg SINE Alu 1 293 -17 594 276 32 60 chr9 110178611 110178748 -7683879 + MIR SINE MIR 20 159 -103 1701 147 0 8 chr9 110178748 110179013 -7683614 + AluSx SINE Alu 31 293 -19 2161 87 13 13 chr9 110179018 110179317 -7683310 + AluSx SINE Alu 6 304 -8 594 276 32 60 chr9 110179317 110179423 -7683204 + MIR SINE MIR 163 262 0 298 305 21 107 chr9 110179627 110179860 -7682767 - MIR SINE MIR -12 250 38 2153 121 0 0 chr9 110180194 110180500 -7682127 + AluSx SINE Alu 1 306 -6 271 240 32 56 chr9 110180698 110180823 -7681804 - L1MC5 LINE L1 -50 7911 7790 2596 207 81 0 chr9 110180871 110181504 -7681123 - L1ME2 LINE L1 -11 6153 5470 210 71 0 0 chr9 110182351 110182379 -7680248 + (TGAA)n Simple_repeat Simple_repeat 4 31 0 212 297 143 0 chr9 110183351 110183442 -7679185 - MIR SINE MIR -16 246 143 407 247 272 0 chr9 110184406 110184564 -7678063 + MER63A DNA MER1_type 10 210 0 251 313 148 5 chr9 110184632 110184849 -7677778 + L2 LINE L2 2811 3058 -214 920 76 0 0 chr9 110184868 110184986 -7677641 + AluSp/q SINE Alu 195 312 -1 290 330 66 51 chr9 110184986 110185183 -7677444 + L2 LINE L2 3068 3267 -5 441 314 12 12 chr9 110186854 110187023 -7675604 + MIR SINE MIR 14 182 -80 2190 124 0 0 chr9 110187294 110187601 -7675026 - AluSx SINE Alu -5 307 1 443 38 38 13 chr9 110187613 110187692 -7674935 + (TA)n Simple_repeat Simple_repeat 2 82 0 411 21 0 0 chr9 110187691 110187739 -7674888 + (GA)n Simple_repeat Simple_repeat 2 49 0 * 1814 120 11 0 chr9 110187739 110188005 -7674622 - AluSx SINE Alu -39 273 5 702 276 72 114 chr9 110188048 110189928 -7672699 - L1MC5 LINE L1 -41 7920 6210 191 260 115 0 chr9 110191475 110191571 -7671056 - MIR SINE MIR -66 142 36 2244 113 3 3 chr9 110393718 110394018 -7468609 + AluSx SINE Alu 1 300 -12 738 117 19 0 chr9 110394430 110394533 -7468094 + AluSq/x SINE Alu 21 125 -187 472 177 9 9 chr9 110394656 110394769 -7467858 + C-rich Low_complexity Low_complexity 2 114 0 23 33 0 0 chr9 110394815 110394845 -7467782 + AT_rich Low_complexity Low_complexity 1 30 0 288 226 0 0 chr9 110394847 110394940 -7467687 + C-rich Low_complexity Low_complexity 1 93 0 204 67 0 0 chr9 110394992 110395022 -7467605 + (A)n Simple_repeat Simple_repeat 1 30 0 372 107 0 0 chr9 110395035 110395125 -7467502 + Alu SINE Alu 237 326 0 510 262 24 0 chr9 110395141 110395267 -7467360 - MER82 DNA MER2_type -524 129 1 211 263 18 0 chr9 110395278 110395329 -7467298 - MIR SINE MIR -92 170 118 2391 98 0 0 chr9 110395329 110395636 -7466991 - AluSx SINE Alu -5 307 1 700 55 0 33 chr9 110395715 110395806 -7466821 - AluJb SINE Alu -16 296 209 1296 240 107 38 chr9 110395806 110396654 -7465973 + L2 LINE L2 2403 3308 -5 1405 139 0 14 chr9 110397172 110397388 -7465239 - AluSg/x SINE Alu -2 310 98 331 280 23 91 chr9 110397942 110398117 -7464510 - L1 LINE L1 -2906 3240 3078 28 0 0 0 chr9 110398132 110398160 -7464467 + AT_rich Low_complexity Low_complexity 1 28 0 32 0 0 0 chr9 110398179 110398211 -7464416 + AT_rich Low_complexity Low_complexity 1 32 0 476 257 19 0 chr9 110399024 110399129 -7463498 - L2 LINE L2 -3 3269 3163 417 280 50 41 chr9 110399439 110399616 -7463011 + MIR SINE MIR 44 216 -40 2050 107 7 0 chr9 110399679 110399998 -7462629 + AluSx SINE Alu 1 321 0 305 273 126 35 chr9 110450198 110450341 -7412286 + MIR SINE MIR 107 262 0 402 207 15 7 chr9 110450908 110451043 -7411584 + (TCCA)n Simple_repeat Simple_repeat 1 136 0 603 224 0 0 chr9 110451055 110451229 -7411398 + (TCCA)n Simple_repeat Simple_repeat 2 175 0 1200 125 3 0 chr9 110451250 110451593 -7411034 + (TCCA)n Simple_repeat Simple_repeat 1 344 0 733 153 268 13 chr9 110452427 110452584 -7410043 - AluJb SINE Alu -29 283 87 572 342 11 0 chr9 110453304 110453494 -7409133 - MER117 DNA MER1_type -3 194 3 381 209 38 19 chr9 110453740 110453845 -7408782 + MER103 DNA DNA 55 161 -5 191 280 67 0 chr9 110454434 110454509 -7408118 + MIR SINE MIR 162 241 -21 334 314 109 38 chr9 110454701 110454940 -7407687 + L2 LINE L2 2804 3059 -213 1998 108 56 63 chr9 110456215 110456593 -7406034 + THE1C LTR MaLR 1 375 0 574 312 25 63 chr9 110456909 110457199 -7405428 + L2 LINE L2 2920 3195 -77 2196 95 3 3 chr9 110457199 110457503 -7405124 - AluSx SINE Alu -8 304 1 574 312 25 63 chr9 110457503 110457577 -7405050 + L2 LINE L2 3195 3270 -2 856 276 143 15 chr9 110457830 110458410 -7404217 + L2 LINE L2 2230 3306 -7 2119 74 81 0 chr9 110458410 110458695 -7403932 + AluSx SINE Alu 1 308 -4 467 284 144 13 chr9 110458707 110458936 -7403691 - L2 LINE L2 -8 3264 3006 425 218 8 65 chr9 110460752 110460876 -7401751 + L1MD2 LINE L1 6240 6356 -3 522 336 9 14 chr9 110460943 110461157 -7401470 + MIR SINE MIR 2 214 -48 2214 121 0 3 chr9 110461257 110461740 -7400887 - AluSx SINE Alu 0 482 1 440 316 115 11 chr9 110461842 110462016 -7400611 - MIR SINE MIR -70 192 1 1323 218 4 0 chr9 110462646 110462926 -7399701 + MER33 DNA MER1_type 22 302 -22 260 261 114 0 chr9 110463465 110463553 -7399074 - MIR SINE MIR -67 141 44 1101 194 7 14 chr9 110464168 110464604 -7398023 + (TGGA)n Simple_repeat Simple_repeat 1 433 0 335 270 73 0 chr9 110464856 110464993 -7397634 + GA-rich Low_complexity Low_complexity 1 147 0 2298 49 0 3 chr9 110466316 110466600 -7396027 + AluY SINE Alu 12 294 -17 498 260 20 36 chr9 110467482 110467604 -7395023 - L1M4 LINE L1 -1701 4445 4326 1419 190 38 7 chr9 110467604 110467893 -7394734 - AluJb SINE Alu -14 298 1 498 260 20 36 chr9 110467893 110467966 -7394661 - L1M4 LINE L1 -1820 4326 4253 2081 103 20 0 chr9 110467981 110468273 -7394354 - AluSq SINE Alu -15 298 1 1566 183 17 10 chr9 110468273 110468568 -7394059 - AluJb SINE Alu -15 297 1 2009 141 0 0 chr9 110468641 110468939 -7393688 - AluSx SINE Alu -13 299 2 2491 43 0 0 chr9 110468947 110469246 -7393381 - AluY SINE Alu -12 299 1 808 130 0 9 chr9 110469268 110469383 -7393244 - AluJb SINE Alu -187 125 12 1793 129 18 7 chr9 110469448 110469746 -7392881 - AluSx SINE Alu 0 301 1 929 149 0 0 chr9 110470312 110470494 -7392133 + AluJb SINE Alu 135 316 0 1999 105 0 41 chr9 110471060 110471386 -7391241 + AluSx SINE Alu 1 314 0 2479 145 43 19 chr9 110471386 110471855 -7390772 + L1MB4 LINE L1 5678 6157 -23 591 188 89 0 chr9 110471866 110471978 -7390649 - FLAM_A SINE Alu -10 123 2 2120 110 0 0 chr9 110471982 110472273 -7390354 - AluSg SINE Alu -13 297 7 2111 120 3 3 chr9 110472280 110472579 -7390048 - AluSq SINE Alu -14 299 1 1436 163 54 32 chr9 110472641 110472945 -7389682 + AluJo SINE Alu 1 310 0 2182 122 0 0 chr9 110473112 110473424 -7389203 - AluSx SINE Alu 0 312 1 205 329 40 0 chr9 110473899 110473975 -7388652 - MIR SINE MIR -97 165 87 489 204 21 0 chr9 110473985 110474078 -7388549 - AluSc SINE Alu -11 298 204 1519 192 27 14 chr9 110474084 110474381 -7388246 - AluSx SINE Alu -11 301 1 900 149 11 81 chr9 110474383 110474557 -7388070 - FRAM SINE Alu -4 162 1 312 27 0 0 chr9 110474563 110474600 -7388027 + (GA)n Simple_repeat Simple_repeat 2 38 0 968 232 46 0 chr9 110474694 110474931 -7387696 - MLT1E1 LTR MaLR -2 652 405 760 205 24 30 chr9 110474991 110475201 -7387426 - MLT1E1 LTR MaLR -420 204 1 699 133 9 0 chr9 110475225 110475330 -7387297 + AluSp/q SINE Alu 193 298 -15 355 270 100 10 chr9 110475378 110475478 -7387149 + MER81 DNA DNA 1 109 -5 2105 112 3 25 chr9 110475504 110475818 -7386809 + AluSq SINE Alu 1 307 -6 1520 168 8 19 chr9 110475840 110476108 -7386519 + AluJb SINE Alu 1 265 -47 2522 106 6 0 chr9 110476108 110476465 -7386162 + THE1B LTR MaLR 6 364 0 243 67 44 0 chr9 110476465 110476510 -7386117 + AluJb SINE Alu 256 302 0 2059 119 0 17 chr9 110476720 110476852 -7385775 + AluSq SINE Alu 1 134 -179 2331 94 0 0 chr9 110476852 110477159 -7385468 + AluSx SINE Alu 6 312 0 2059 119 0 17 chr9 110477159 110477328 -7385299 + AluSq SINE Alu 134 297 -16 1912 89 0 0 chr9 110477329 110477575 -7385052 + AluSg SINE Alu 52 297 -13 2022 126 7 0 chr9 110477833 110478135 -7384492 - AluSx SINE Alu -8 304 1 210 143 0 0 chr9 110478238 110478273 -7384354 + (A)n Simple_repeat Simple_repeat 1 35 0 2115 126 0 3 chr9 110478797 110479106 -7383521 - AluSx SINE Alu -4 308 1 1070 149 19 53 chr9 110479174 110479382 -7383245 + Tigger2a DNA MER2_type 2 202 -232 1893 90 19 15 chr9 110479382 110479650 -7382977 - AluJb SINE Alu -10 302 34 369 162 0 0 chr9 110479680 110479748 -7382879 + CT-rich Low_complexity Low_complexity 4 71 0 1558 116 54 4 chr9 110479763 110480005 -7382622 - AluSx SINE Alu -58 254 1 2156 100 0 0 chr9 110480009 110480298 -7382329 - AluSq SINE Alu -20 293 5 253 164 0 15 chr9 110480309 110480376 -7382251 + Tigger2a DNA MER2_type 212 277 -167 597 163 0 0 chr9 110480385 110480477 -7382150 + AluJ/FLAM SINE Alu 3 94 -218 1548 173 35 7 chr9 110480661 110480950 -7381677 - AluJb SINE Alu -15 297 1 2009 104 42 0 chr9 110481111 110481398 -7381229 + AluSx SINE Alu 1 299 -13 787 161 0 0 chr9 110481536 110481654 -7380973 - FLAM_C SINE Alu -15 118 1 2182 112 0 0 chr9 110481876 110482179 -7380448 - AluSx SINE Alu -9 303 1 744 258 131 79 chr9 110482180 110482739 -7379888 - MLT1G LTR MaLR -7 583 1 2016 115 3 26 chr9 110482941 110483253 -7379374 + AluSx SINE Alu 1 305 -7 510 284 87 22 chr9 110483260 110483443 -7379184 - MIR SINE MIR -29 233 39 1834 252 68 25 chr9 110483507 110484018 -7378609 + MLT1G LTR MaLR 1 533 -57 1909 101 0 73 chr9 110484456 110484649 -7377978 - AluJb SINE Alu -5 307 144 2270 77 0 3 chr9 110484649 110484946 -7377681 - AluSg SINE Alu -14 296 1 1909 101 0 73 chr9 110484946 110485069 -7377558 - AluJb SINE Alu -168 144 14 2296 91 3 10 chr9 110485440 110485747 -7376880 + AluSp SINE Alu 1 305 -8 2209 97 0 3 chr9 110486099 110486398 -7376229 - AluSx SINE Alu -14 298 1 241 143 0 0 chr9 110486399 110486441 -7376186 + MER57B LTR ERV1 393 434 0 197 245 41 0 chr9 110487065 110487114 -7375513 + MIR SINE MIR 79 129 -133 2282 93 3 3 chr9 110487770 110488082 -7374545 + AluSx SINE Alu 1 312 0 342 254 42 33 chr9 110488096 110488251 -7374376 + MIR SINE MIR 2 163 -67 1743 130 43 14 chr9 110488350 110488627 -7374000 + AluJb SINE Alu 1 285 -27 219 83 0 0 chr9 110488656 110488673 -7373954 + (T)n Simple_repeat Simple_repeat 1 17 -19 2129 104 0 13 chr9 110488673 110488972 -7373655 + AluSx SINE Alu 1 295 -17 219 83 0 0 chr9 110488972 110488990 -7373637 + (T)n Simple_repeat Simple_repeat 16 36 0 1089 177 84 8 chr9 110489031 110489268 -7373359 + L1MB3 LINE L1 5686 5940 -243 371 147 0 4 chr9 110489270 110489338 -7373289 + Alu SINE Alu 1 51 -248 * 1320 156 4 0 chr9 110489329 110489554 -7373073 - MER57A LTR ERV1 -177 226 1 342 229 21 21 chr9 110489564 110489660 -7372967 - MLT1J1 LTR MaLR -63 383 288 891 199 27 5 chr9 110489664 110489850 -7372777 - MLT1J2 LTR MaLR -249 201 12 1728 160 0 14 chr9 110489878 110490191 -7372436 - AluSp SINE Alu 0 309 1 254 130 0 0 chr9 110490201 110490247 -7372380 - MADE1 DNA Mariner -34 46 1 429 286 105 0 chr9 110490247 110490380 -7372247 - MIR SINE MIR -114 148 2 728 259 73 5 chr9 110490460 110490665 -7371962 + MIR SINE MIR 18 236 -26 403 138 0 15 chr9 110490855 110490920 -7371707 + LTR2B LTR ERV1 427 490 0 2089 101 22 35 chr9 110491122 110491438 -7371189 + AluSx SINE Alu 1 312 0 2184 91 7 16 chr9 110491853 110492162 -7370465 + AluSg SINE Alu 1 306 -4 1573 160 7 33 chr9 110492316 110492616 -7370011 - MLT1C LTR MaLR 0 467 176 1254 120 0 11 chr9 110492624 110492808 -7369819 - AluSg/x SINE Alu -21 291 110 702 188 30 0 chr9 110492857 110492990 -7369637 - MSTD LTR MaLR 0 396 260 520 204 83 72 chr9 110492990 110493171 -7369456 - FRAM SINE Alu -1 175 1 937 177 0 6 chr9 110493175 110493339 -7369288 - AluJb SINE Alu -14 298 136 544 202 65 89 chr9 110493339 110493550 -7369077 - MLT1A1 LTR MaLR -123 334 1 2272 98 0 0 chr9 110493552 110493858 -7368769 + AluSq SINE Alu 1 306 -7 290 277 54 68 chr9 110493962 110494110 -7368517 + L2 LINE L2 3124 3269 -3 897 113 0 0 chr9 110494154 110494278 -7368349 + FLAM_C SINE Alu 1 124 -19 189 74 0 0 chr9 110495044 110495071 -7367556 + (TC)n Simple_repeat Simple_repeat 2 28 0 423 0 0 0 chr9 110495165 110495212 -7367415 + (CA)n Simple_repeat Simple_repeat 1 47 0 234 0 0 0 chr9 110495342 110495368 -7367259 + (CAG)n Simple_repeat Simple_repeat 3 28 0 303 49 0 0 chr9 110496053 110496094 -7366533 + (TC)n Simple_repeat Simple_repeat 1 41 0 837 152 0 0 chr9 110496313 110496445 -7366182 - FRAM SINE Alu -23 153 22 185 184 26 0 chr9 110496599 110496637 -7365990 + L2 LINE L2 3272 3310 -3 316 336 14 21 chr9 110496786 110496929 -7365698 + MIR SINE MIR 7 148 -114 254 297 135 18 chr9 110497091 110497202 -7365425 - L2 LINE L2 -3 3310 3187 * 583 326 23 19 chr9 110497180 110497395 -7365232 - MIR SINE MIR -34 228 13 877 147 0 22 chr9 110497404 110497540 -7365087 - FLAM_C SINE Alu 0 133 1 2384 81 3 0 chr9 110497580 110497889 -7364738 - AluSg SINE Alu 0 310 1 524 306 101 17 chr9 110497889 110498374 -7364253 + L2 LINE L2 2687 3214 -58 497 183 10 0 chr9 110498515 110498619 -7364008 + CT-rich Low_complexity Low_complexity 2 106 0 1462 153 8 0 chr9 110498623 110498864 -7363763 - AluSg/x SINE Alu -1 311 69 2336 98 0 0 chr9 110499408 110499715 -7362912 + AluSx SINE Alu 1 307 -5 327 411 57 5 chr9 110499839 110500048 -7362579 + MIR SINE MIR 12 231 -31 192 178 151 41 chr9 110500107 110500180 -7362447 - L2 LINE L2 -50 3222 3142 217 139 0 23 chr9 110500268 110500311 -7362316 + L2 LINE L2 3267 3308 -5 1446 147 20 36 chr9 110500318 110500570 -7362057 + AluJb SINE Alu 2 249 -63 216 189 0 0 chr9 110500571 110500608 -7362019 + A-rich Low_complexity Low_complexity 2 38 0 366 282 184 29 chr9 110501783 110502174 -7360453 + L2 LINE L2 2645 3105 -167 298 180 198 33 chr9 110502227 110502347 -7360280 - MIR SINE MIR -63 145 28 318 253 44 0 chr9 110502366 110502457 -7360170 - MIR3 SINE MIR -24 184 90 2158 129 3 0 chr9 110503690 110504001 -7358626 - AluSx SINE Alu 0 312 1 344 116 19 0 chr9 110504040 110504103 -7358524 - MER57A LTR ERV1 -58 345 295 290 298 0 12 chr9 110504331 110504415 -7358212 - L2 LINE L2 -2 3270 3188 1815 127 3 40 chr9 110504716 110504819 -7357808 + AluSx SINE Alu 9 114 -198 2338 74 0 16 chr9 110504819 110505130 -7357497 - AluSc SINE Alu -3 306 1 1815 127 3 40 chr9 110505130 110505326 -7357301 + AluSx SINE Alu 114 297 -15 215 210 48 0 chr9 110505954 110506016 -7356611 + L2 LINE L2 2439 2503 -811 338 284 47 47 chr9 110506066 110506277 -7356350 + L2 LINE L2 2637 2847 -467 1936 159 10 0 chr9 110506414 110506723 -7355904 + AluSx SINE Alu 1 312 0 2217 116 3 3 chr9 110506726 110507037 -7355590 + AluSp SINE Alu 3 313 0 544 320 48 0 chr9 110507092 110507298 -7355329 - L1MEc LINE L1 -6047 349 134 27 29 0 0 chr9 110507388 110507422 -7355205 + AT_rich Low_complexity Low_complexity 1 34 0 783 187 7 0 chr9 110507426 110507565 -7355062 - FLAM_C SINE Alu -1 142 3 1149 190 26 0 chr9 110507571 110507797 -7354830 - L1MD3 LINE L1 -25 7970 7739 451 244 45 0 chr9 110507790 110507903 -7354724 + L1MB3 LINE L1 5692 5821 -362 * 2320 97 3 0 chr9 110507903 110508213 -7354414 + AluSx SINE Alu 1 311 -1 451 244 45 0 chr9 110508213 110508231 -7354396 + L1MB3 LINE L1 5821 5837 -346 794 253 187 32 chr9 110508312 110508345 -7354282 + MLT1E3 LTR MaLR 1 28 -596 835 150 0 8 chr9 110508345 110508472 -7354155 - FLAM_A SINE Alu -7 126 1 794 253 187 32 chr9 110508472 110508671 -7353956 + MLT1E3 LTR MaLR 28 195 -429 2063 132 3 0 chr9 110508671 110508975 -7353652 + AluSx SINE Alu 3 307 -5 794 253 187 32 chr9 110508975 110509189 -7353438 + MLT1E3 LTR MaLR 195 482 -142 566 165 19 0 chr9 110509297 110509400 -7353227 + MLT1E3 LTR MaLR 442 546 -47 1369 147 5 0 chr9 110509503 110509707 -7352920 - AluJb SINE Alu -102 210 6 387 249 11 136 chr9 110509835 110509876 -7352751 + L2 LINE L2 3156 3200 -113 1079 179 162 45 chr9 110509876 110510049 -7352578 - MER33 DNA MER1_type -2261 324 173 1708 127 54 11 chr9 110510049 110510325 -7352302 - AluJo SINE Alu -24 288 1 1079 179 162 45 chr9 110510325 110510441 -7352186 - MER33 DNA MER1_type -2412 173 1 387 249 11 136 chr9 110510441 110510576 -7352051 + L2 LINE L2 3200 3310 -3 265 246 0 0 chr9 110510628 110510689 -7351938 + CT-rich Low_complexity Low_complexity 4 64 0 245 146 18 55 chr9 110510832 110510887 -7351740 - MER5A DNA MER1_type -90 99 47 249 236 214 0 chr9 110512483 110512572 -7350055 + MIR SINE MIR 30 137 -71 198 171 0 0 chr9 110513000 110513035 -7349592 + MIR SINE MIR 110 144 -64 2200 93 13 3 chr9 110513122 110513423 -7349204 - AluSq SINE Alu -9 304 1 435 154 55 0 chr9 110513568 110513659 -7348968 - L1MB2 LINE L1 -3 6168 6073 972 147 11 28 chr9 110513659 110513811 -7348816 - AluJb SINE Alu -25 287 137 1753 161 20 3 chr9 110513811 110513986 -7348641 - AluSx SINE Alu -8 304 120 243 0 0 0 chr9 110513986 110514013 -7348614 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1753 161 20 3 chr9 110514013 110514136 -7348491 - AluSx SINE Alu -192 120 1 972 147 11 28 chr9 110514136 110514160 -7348467 - AluJb SINE Alu -175 137 114 476 302 68 10 chr9 110514283 110514475 -7348152 + MIR SINE MIR 16 218 -44 297 237 31 0 chr9 110515496 110515593 -7347034 + L2 LINE L2 2913 3012 -260 289 301 21 21 chr9 110515642 110515735 -7346892 + L2 LINE L2 3217 3309 -4 1438 142 0 9 chr9 110516068 110516301 -7346326 + AluJb SINE Alu 1 231 -81 1576 145 142 33 chr9 110516581 110516918 -7345709 + THE1C LTR MaLR 2 375 0 552 238 56 0 chr9 110516969 110517112 -7345515 - MIR SINE MIR -12 250 100 208 286 0 77 chr9 110517399 110517410 -7345217 + MER5A DNA MER1_type 8 11 -178 314 291 10 39 chr9 110517410 110517513 -7345114 - MER5A DNA MER1_type -2 187 88 2528 55 0 0 chr9 110517661 110517969 -7344658 - AluY SINE Alu -3 308 1 260 301 12 12 chr9 110518140 110518223 -7344404 - MIR3 SINE MIR -37 171 89 987 174 6 0 chr9 110518405 110518572 -7344055 + FRAM SINE Alu 1 166 -10 220 205 0 0 chr9 110518607 110518646 -7343981 + L2 LINE L2 3225 3263 -9 1509 158 90 0 chr9 110520087 110520257 -7342370 - AluJb SINE Alu -8 304 98 288 0 0 0 chr9 110520257 110520289 -7342338 + (TG)n Simple_repeat Simple_repeat 2 33 0 1509 158 90 0 chr9 110520289 110520397 -7342230 - AluJb SINE Alu -214 98 1 2289 219 49 22 chr9 110520886 110521439 -7341188 - MER74B LTR ERVL 0 622 55 441 281 82 14 chr9 110521656 110521802 -7340825 - MIR SINE MIR -60 202 47 376 61 0 30 chr9 110521942 110522008 -7340619 + (TTTTA)n Simple_repeat Simple_repeat 2 65 0 2192 82 0 0 chr9 110522010 110522289 -7340338 - AluSg SINE Alu -30 280 2 360 59 0 0 chr9 110522289 110522340 -7340287 + (TTTA)n Simple_repeat Simple_repeat 1 51 0 1907 99 3 51 chr9 110522342 110522634 -7339993 - AluSq SINE Alu -35 278 1 1861 139 4 0 chr9 110522639 110522919 -7339708 - AluJb SINE Alu -18 294 14 2066 113 0 0 chr9 110522935 110523239 -7339388 - AluSx SINE Alu 0 304 1 384 259 56 56 chr9 110523351 110523513 -7339114 - MIR SINE MIR -80 182 21 28 38 0 19 chr9 110523739 110523770 -7338857 + AT_rich Low_complexity Low_complexity 1 32 -20 1748 158 0 17 chr9 110523770 110524062 -7338565 + AluJb SINE Alu 1 287 -25 28 38 0 19 chr9 110524062 110524083 -7338544 + AT_rich Low_complexity Low_complexity 32 52 0 1090 232 39 11 chr9 110524091 110524245 -7338382 - AluJb SINE Alu -15 297 130 2198 118 0 3 chr9 110524245 110524558 -7338069 - AluSx SINE Alu 0 312 1 1090 232 39 11 chr9 110524558 110524687 -7337940 - AluJb SINE Alu -182 130 6 315 177 0 51 chr9 110524691 110524770 -7337857 - L1MB8 LINE L1 -2 6176 6102 2290 88 0 13 chr9 110524833 110525141 -7337486 + AluSg SINE Alu 1 304 -6 1978 148 3 0 chr9 110525292 110525596 -7337031 + AluSx SINE Alu 1 305 -7 22 0 0 0 chr9 110525669 110525691 -7336936 + AT_rich Low_complexity Low_complexity 1 22 0 229 125 54 0 chr9 110525691 110525747 -7336880 - L1PB2 LINE L1 -2 6149 6091 583 246 4 129 chr9 110526487 110526727 -7335900 - L2 LINE L2 0 3313 3104 1678 109 8 12 chr9 110526988 110527236 -7335391 + AluSg SINE Alu 53 299 -11 986 250 52 40 chr9 110527237 110527322 -7335305 + L1M4 LINE L1 4650 4732 -1414 576 40 0 0 chr9 110527322 110527397 -7335230 + (TCTCCC)n Simple_repeat Simple_repeat 1 75 0 10521 28 1 87 chr9 110527397 110528879 -7333748 + SVA Other Other 50 1386 0 986 250 52 40 chr9 110528879 110528990 -7333637 + L1M4 LINE L1 4732 4840 -1306 2043 128 0 0 chr9 110528990 110529294 -7333333 - AluSx SINE Alu -8 304 1 986 250 52 40 chr9 110529294 110529495 -7333132 + L1M4 LINE L1 4840 5054 -1092 338 245 75 27 chr9 110529468 110529498 -7333129 + L1MEc LINE L1 1641 1668 -4728 * 1952 136 7 3 chr9 110529498 110529806 -7332821 + AluSx SINE Alu 1 309 -3 338 245 75 27 chr9 110529806 110529963 -7332664 + L1MEc LINE L1 1668 1837 -4559 444 205 0 0 chr9 110529965 110530048 -7332579 - AluS SINE Alu -2 310 228 1615 198 0 0 chr9 110530049 110530337 -7332290 - AluJo SINE Alu -14 298 11 705 232 84 46 chr9 110530353 110530638 -7331989 + L1MEc LINE L1 1814 2109 -4287 865 119 0 0 chr9 110530671 110530789 -7331838 + FLAM_C SINE Alu 1 118 -25 372 256 87 112 chr9 110530831 110530946 -7331681 + L1ME4a LINE L1 5718 5834 -287 180 0 0 0 chr9 110530946 110530966 -7331661 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 817 138 0 0 chr9 110530968 110531084 -7331543 - FLAM_C SINE Alu -15 118 3 372 256 87 112 chr9 110531084 110531195 -7331432 + L1ME4a LINE L1 5835 5943 -178 2344 83 0 0 chr9 110531195 110531495 -7331132 - AluY SINE Alu -11 300 1 372 256 87 112 chr9 110531495 110531506 -7331121 + L1ME4a LINE L1 5943 5953 -168 352 152 12 15 chr9 110531667 110531748 -7330879 + AluS SINE Alu 1 66 -233 541 159 0 0 chr9 110531751 110531839 -7330788 - AluSg SINE Alu -222 88 1 2138 119 0 3 chr9 110531891 110532194 -7330433 + AluSx SINE Alu 1 302 -10 544 318 74 0 chr9 110532208 110532425 -7330202 + MIR SINE MIR 28 260 -2 202 200 0 0 chr9 110532743 110532778 -7329849 + CT-rich Low_complexity Low_complexity 3 37 0 249 242 15 15 chr9 110532872 110532938 -7329689 - MLT1K LTR MaLR -336 252 187 417 20 0 0 chr9 110533425 110533475 -7329152 + (CA)n Simple_repeat Simple_repeat 2 51 0 282 202 13 0 chr9 110534355 110534426 -7328201 + MIR SINE MIR 55 129 -79 243 0 0 0 chr9 110535047 110535074 -7327553 + (CAGGG)n Simple_repeat Simple_repeat 2 28 0 225 332 128 5 chr9 110535965 110536152 -7326475 + MIR SINE MIR 37 246 -16 255 305 49 12 chr9 110536171 110536253 -7326374 - L2 LINE L2 0 3272 3188 1128 143 0 16 chr9 110538127 110538309 -7324318 - FRAM SINE Alu -1 175 1 1762 175 0 0 chr9 110538319 110538611 -7324016 - AluJo SINE Alu -20 292 1 344 362 174 10 chr9 110538615 110539137 -7323490 + L2 LINE L2 2149 2756 -558 417 198 0 0 chr9 110539240 110539326 -7323301 + (TATATG)n Simple_repeat Simple_repeat 5 90 0 786 180 0 0 chr9 110539326 110539448 -7323179 - FLAM_A SINE Alu -11 122 1 213 389 60 7 chr9 110539502 110539651 -7322976 + L2 LINE L2 3088 3244 -28 242 206 32 0 chr9 110540370 110540433 -7322194 + MIR SINE MIR 103 167 -95 465 304 18 12 chr9 110540582 110540750 -7321877 - MIR SINE MIR -40 222 54 243 0 0 0 chr9 110540974 110541001 -7321626 + (CAGG)n Simple_repeat Simple_repeat 3 29 0 360 231 94 43 chr9 110541319 110541436 -7321191 + MIR SINE MIR 90 212 -50 278 303 57 8 chr9 110541471 110541593 -7321034 - MIR SINE MIR -61 147 20 258 379 9 9 chr9 110542445 110542561 -7320066 - MIR3 SINE MIR -29 179 64 538 258 53 0 chr9 110542638 110542770 -7319857 - MIR SINE MIR -34 228 90 203 342 87 13 chr9 110543181 110543330 -7319297 + MIR SINE MIR 13 172 -90 838 253 76 27 chr9 110543914 110544136 -7318491 - MER58B DNA MER1_type -2104 316 74 2152 110 0 0 chr9 110544136 110544461 -7318166 + AluSq SINE Alu 1 299 -14 838 253 76 27 chr9 110544461 110544539 -7318088 - MER58B DNA MER1_type -2346 74 1 305 244 191 24 chr9 110544818 110544986 -7317641 + MIR SINE MIR 33 228 -34 24 0 0 0 chr9 110545493 110545517 -7317110 + AT_rich Low_complexity Low_complexity 1 24 0 302 294 150 38 chr9 110545918 110546078 -7316549 - MIR3 SINE MIR -28 180 3 186 263 50 62 chr9 110546115 110546195 -7316432 + MIR3 SINE MIR 92 170 -38 2086 186 50 14 chr9 110546549 110546692 -7315935 + L1MB3 LINE L1 5683 5820 -363 2041 123 0 23 chr9 110546692 110547001 -7315626 + AluSx SINE Alu 1 302 -10 2086 186 50 14 chr9 110547001 110547341 -7315286 + L1MB3 LINE L1 5820 6183 0 380 297 62 0 chr9 110547650 110547778 -7314849 - MIR3 SINE MIR -36 172 37 187 282 90 26 chr9 110547875 110547953 -7314674 + MIR SINE MIR 57 139 -123 811 118 22 29 chr9 110548357 110548493 -7314134 + AluJo SINE Alu 1 135 -177 1289 196 114 4 chr9 110548493 110548764 -7313863 + AluJo SINE Alu 1 301 -11 223 286 205 9 chr9 110549330 110549442 -7313185 + MIR3 SINE MIR 61 194 -14 285 29 0 0 chr9 110549919 110549953 -7312674 + (TG)n Simple_repeat Simple_repeat 2 35 0 254 319 0 17 chr9 110550905 110551024 -7311603 + GA-rich Low_complexity Low_complexity 3 119 0 227 288 55 0 chr9 110551772 110551845 -7310782 - MIR SINE MIR -56 152 76 235 241 0 0 chr9 110552242 110552300 -7310327 + MER117 DNA MER1_type 2 59 -138 327 305 28 35 chr9 110552625 110552766 -7309861 + MIR3 SINE MIR 46 185 -23 291 305 48 0 chr9 110553113 110553218 -7309409 - MIR SINE MIR -69 139 30 282 252 36 36 chr9 110554490 110554601 -7308026 - MIR3 SINE MIR -7 201 91 252 100 0 0 chr9 110555446 110555486 -7307141 + (CA)n Simple_repeat Simple_repeat 1 40 0 185 219 31 47 chr9 110556721 110556785 -7305842 - MIR SINE MIR -68 140 78 311 304 65 20 chr9 110557376 110557578 -7305049 - MIR SINE MIR -3 259 47 2045 107 3 50 chr9 110558709 110559026 -7303601 + AluSx SINE Alu 1 302 -10 183 286 0 0 chr9 110559163 110559205 -7303422 + L2 LINE L2 3154 3195 -77 368 181 42 0 chr9 110559302 110559374 -7303253 + MIR SINE MIR 80 154 -108 524 214 107 0 chr9 110559618 110559721 -7302906 - MER81 DNA DNA 0 114 1 226 316 0 25 chr9 110560692 110560771 -7301856 + G-rich Low_complexity Low_complexity 2 78 0 450 291 35 14 chr9 110561457 110561598 -7301029 - MIR SINE MIR -91 171 28 211 152 0 0 chr9 110562221 110562254 -7300373 + MIR SINE MIR 114 146 -62 251 352 71 64 chr9 110563520 110563787 -7298840 + L2 LINE L2 2951 3219 -53 1699 152 4 7 chr9 110565077 110565347 -7297280 + AluSx SINE Alu 44 312 0 318 227 57 0 chr9 110565347 110565435 -7297192 - Charlie1 DNA MER1_type -47 2714 2622 305 121 0 52 chr9 110565953 110566011 -7296616 + AluJo SINE Alu 85 139 -163 1586 176 50 4 chr9 110566013 110566130 -7296497 + AluJb SINE Alu 1 111 -201 188 86 29 0 chr9 110566130 110566165 -7296462 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 1586 176 50 4 chr9 110566165 110566325 -7296302 + AluJb SINE Alu 111 291 -21 247 296 14 0 chr9 110568279 110568350 -7294277 + MIR3 SINE MIR 111 182 -26 796 204 64 45 chr9 110569161 110569426 -7293201 + MER33 DNA MER1_type 1 270 -54 1565 112 150 4 chr9 110569427 110569687 -7292940 + AluSg SINE Alu 1 298 -12 305 247 25 49 chr9 110569689 110569770 -7292857 - L1MC4 LINE L1 -1350 6692 6614 295 165 0 153 chr9 110571082 110571167 -7291460 + MIR3 SINE MIR 106 177 -31 333 277 50 0 chr9 110571177 110571278 -7291349 - MIR SINE MIR -60 148 43 379 255 43 43 chr9 110571785 110571926 -7290701 - MIR SINE MIR -109 153 13 * 410 226 43 0 chr9 110571899 110571992 -7290635 - MIR SINE MIR -48 214 118 204 277 123 0 chr9 110573631 110573696 -7288931 - L3 LINE CR1 -100 1477 1405 248 128 0 0 chr9 110573716 110573763 -7288864 - Alu SINE Alu -6 302 256 192 222 0 0 chr9 110574133 110574187 -7288440 + L2 LINE L2 2921 2974 -340 200 132 0 26 chr9 110574628 110574666 -7287961 + L3 LINE CR1 1425 1461 -116 1040 222 70 119 chr9 110574913 110575013 -7287614 + MLT1C LTR MaLR 5 108 -359 2029 109 0 11 chr9 110575013 110575298 -7287329 + AluSx SINE Alu 1 282 -30 1040 222 70 119 chr9 110575298 110575684 -7286943 + MLT1C LTR MaLR 108 467 0 380 288 9 18 chr9 110575693 110575804 -7286823 - MIR SINE MIR -62 146 37 255 196 18 18 chr9 110576509 110576565 -7286062 - MER117 DNA MER1_type -18 179 124 2184 122 0 0 chr9 110576568 110576871 -7285756 - AluSx SINE Alu -9 303 1 655 167 5 113 chr9 110576968 110577154 -7285473 + MER20 DNA MER1_type 1 166 -53 1440 138 0 0 chr9 110577260 110577470 -7285157 - AluJo SINE Alu -13 299 90 180 77 0 0 chr9 110577538 110577564 -7285063 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 787 179 131 40 chr9 110577565 110577813 -7284814 + Charlie1 DNA MER1_type 2424 2701 -60 1535 150 105 0 chr9 110577813 110578080 -7284547 - AluSx SINE Alu -17 295 1 787 179 131 40 chr9 110578080 110578105 -7284522 + Charlie1 DNA MER1_type 2701 2722 -39 2177 97 10 0 chr9 110578276 110578564 -7284063 - AluSq SINE Alu -22 291 1 237 186 0 0 chr9 110578615 110578658 -7283969 + Charlie1 DNA MER1_type 2718 2760 -1 572 144 28 33 chr9 110579261 110579441 -7283186 + (TGGA)n Simple_repeat Simple_repeat 2 180 0 998 82 38 6 chr9 110579473 110579814 -7282813 + (TGGA)n Simple_repeat Simple_repeat 2 353 0 596 183 35 0 chr9 110579918 110580060 -7282567 + L1M4 LINE L1 5186 5332 -814 2184 94 0 0 chr9 110580062 110580348 -7282279 + AluSx SINE Alu 3 288 -24 1958 154 26 54 chr9 110580363 110580705 -7281922 - L1MB2 LINE L1 -6 6165 5834 2152 117 10 0 chr9 110580705 110581012 -7281615 - AluSx SINE Alu -2 310 1 1958 154 26 54 chr9 110581012 110581058 -7281569 - L1MB2 LINE L1 -337 5834 5788 264 113 0 19 chr9 110581058 110581111 -7281516 + L1MB7 LINE L1 6128 6179 -5 545 256 56 15 chr9 110581126 110581321 -7281306 + L1ME3A LINE L1 5963 6165 -5 359 225 22 0 chr9 110582240 110582329 -7280298 + MER103 DNA DNA 57 147 -19 536 340 67 32 chr9 110582487 110582740 -7279887 + MIR SINE MIR 1 262 0 202 280 0 0 chr9 110582740 110582790 -7279837 + (CTA)n Simple_repeat Simple_repeat 3 52 0 230 292 146 56 chr9 110582936 110583080 -7279547 + MIR SINE MIR 20 176 -86 215 350 83 6 chr9 110583079 110583259 -7279368 - MIR SINE MIR -2 260 67 * 426 236 97 0 chr9 110583738 110583882 -7278745 + MER117 DNA MER1_type 1 158 -39 609 295 42 0 chr9 110584360 110584526 -7278101 - MER5B DNA MER1_type -4 174 2 2276 90 10 0 chr9 110585063 110585363 -7277264 - AluSq SINE Alu -10 303 1 330 273 139 29 chr9 110585441 110585613 -7277014 - MIR SINE MIR -12 250 60 226 298 60 0 chr9 110585846 110585930 -7276697 - MIR SINE MIR -102 106 18 303 122 0 0 chr9 110586470 110586519 -7276108 - MIR SINE MIR -89 119 71 213 333 32 0 chr9 110586606 110586669 -7275958 - MIR SINE MIR -3 259 195 240 163 0 0 chr9 110587685 110587728 -7274899 + (CA)n Simple_repeat Simple_repeat 2 44 0 425 252 29 0 chr9 110589740 110589843 -7272784 + MIR3 SINE MIR 93 198 -10 1955 156 0 10 chr9 110590233 110590540 -7272087 - AluJo SINE Alu -8 304 1 1940 138 3 0 chr9 110591196 110591485 -7271142 + AluSx SINE Alu 1 290 -22 202 298 105 16 chr9 110591694 110591818 -7270809 - MIR3 SINE MIR -71 137 3 2130 141 0 3 chr9 110592246 110592552 -7270075 - 7SLRNA srpRNA srpRNA -14 306 2 492 273 103 39 chr9 110592629 110592962 -7269665 - L2 LINE L2 -213 3059 2686 2023 146 7 0 chr9 110593545 110593846 -7268781 - AluJb SINE Alu -7 305 3 1869 116 0 22 chr9 110594640 110594916 -7267711 - AluJo SINE Alu -5 307 38 238 269 81 60 chr9 110594920 110595069 -7267558 + Charlie7 DNA MER1_type 2461 2612 0 2464 113 22 19 chr9 110595401 110595764 -7266863 + THE1B LTR MaLR 1 364 0 331 222 153 35 chr9 110596017 110596161 -7266466 + MLT1K LTR MaLR 188 348 -240 187 152 43 0 chr9 110596697 110596743 -7265884 + (GGGTG)n Simple_repeat Simple_repeat 4 51 0 221 211 0 0 chr9 110597277 110597315 -7265312 + MIR SINE MIR 116 153 -109 409 298 25 25 chr9 110599123 110599281 -7263346 + L2 LINE L2 3000 3157 -115 277 156 16 16 chr9 110599618 110599682 -7262945 + GA-rich Low_complexity Low_complexity 1 64 0 2434 51 3 22 chr9 110599791 110600103 -7262524 - AluY SINE Alu -5 306 1 358 295 160 17 chr9 110600257 110600494 -7262133 + L2 LINE L2 1746 2016 -1298 382 290 96 57 chr9 110602376 110602711 -7259916 - L2 LINE L2 -10 3262 2915 2266 166 11 84 chr9 110602733 110602944 -7259683 + L1MB8 LINE L1 5648 5873 -305 2330 87 0 0 chr9 110602944 110603243 -7259384 + AluSx SINE Alu 1 299 -13 2266 166 11 84 chr9 110603243 110603599 -7259028 + L1MB8 LINE L1 5873 6173 -5 322 239 142 22 chr9 110604652 110604786 -7257841 - MER117 DNA MER1_type -43 154 5 779 145 8 15 chr9 110604890 110605021 -7257606 - AluJb SINE Alu -178 134 5 605 299 142 31 chr9 110605117 110605575 -7257052 + MLT1J LTR MaLR 1 509 -2 240 321 5 87 chr9 110605779 110605963 -7256664 - MIR SINE MIR -29 233 65 905 121 0 0 chr9 110606009 110606133 -7256494 + FLAM_C SINE Alu 1 124 -19 187 275 138 0 chr9 110607418 110607498 -7255129 + MIR SINE MIR 62 152 -56 354 273 38 53 chr9 110608599 110608731 -7253896 - MIR SINE MIR -67 141 11 267 301 173 8 chr9 110608867 110609000 -7253627 + MIR SINE MIR 107 261 -1 227 181 12 84 chr9 110610133 110610216 -7252411 + G-rich Low_complexity Low_complexity 5 81 0 346 296 13 50 chr9 110610223 110610382 -7252245 - MIR3 SINE MIR -19 189 37 224 365 131 0 chr9 110610822 110610929 -7251698 - MIR SINE MIR -23 239 119 1947 135 7 26 chr9 110611142 110611445 -7251182 + AluSx SINE Alu 1 297 -15 2064 137 7 0 chr9 110612007 110612314 -7250313 - AluJb SINE Alu -3 309 1 2226 110 0 13 chr9 110612639 110612956 -7249671 + AluSp SINE Alu 1 313 0 271 269 30 0 chr9 110613228 110613295 -7249332 - MIR SINE MIR -114 148 80 221 265 0 0 chr9 110613717 110613766 -7248861 - L2 LINE L2 -2 3311 3263 341 301 13 72 chr9 110613894 110614047 -7248580 - MIR3 SINE MIR 0 208 65 207 208 19 0 chr9 110614182 110614235 -7248392 + (CCTG)n Simple_repeat Simple_repeat 3 56 0 210 98 0 122 chr9 110614423 110614546 -7248081 + (CCCCCT)n Simple_repeat Simple_repeat 4 111 0 2015 110 4 4 chr9 110615564 110615877 -7246750 + AluSg SINE Alu 1 313 0 2196 109 0 6 chr9 110615877 110616188 -7246439 + AluSx SINE Alu 1 309 -3 222 289 234 8 chr9 110617505 110617633 -7244994 - MIR SINE MIR -103 159 3 932 141 6 0 chr9 110617911 110618088 -7244539 + (TCCA)n Simple_repeat Simple_repeat 3 180 0 729 217 0 0 chr9 110618059 110618234 -7244393 + (CCCA)n Simple_repeat Simple_repeat 2 176 0 * 954 183 0 0 chr9 110618223 110618566 -7244061 + (TCCA)n Simple_repeat Simple_repeat 1 343 0 493 338 64 26 chr9 110618569 110618992 -7243635 - L2 LINE L2 0 3272 2834 234 364 159 0 chr9 110619804 110619999 -7242628 + L2 LINE L2 2990 3215 -57 386 245 109 49 chr9 110621706 110621890 -7240737 + MIR SINE MIR 16 210 -52 276 270 200 17 chr9 110621993 110622108 -7240519 + MIR3 SINE MIR 43 178 -30 557 247 13 32 chr9 110622723 110622877 -7239750 + MIR3 SINE MIR 12 162 -46 902 246 71 58 chr9 110622881 110623345 -7239282 - MER113 DNA MER1_type? -6 515 46 2111 120 0 0 chr9 110623349 110623641 -7238986 + AluSx SINE Alu 1 292 -20 180 176 0 0 chr9 110623714 110623748 -7238879 + (CCCCAA)n Simple_repeat Simple_repeat 1 34 0 1888 207 18 27 chr9 110624137 110624545 -7238082 + L1MB5 LINE L1 5710 6115 -59 1901 100 10 64 chr9 110624545 110624856 -7237771 - AluY SINE Alu -17 294 1 1888 207 18 27 chr9 110624856 110624896 -7237731 + L1MB5 LINE L1 6115 6154 -20 1841 107 16 78 chr9 110624897 110625206 -7237421 - AluSx SINE Alu -22 290 1 1822 153 0 37 chr9 110625251 110625572 -7237055 + AluJo SINE Alu 1 309 -3 213 345 0 36 chr9 110626126 110626236 -7236391 + L2 LINE L2 3115 3220 -52 180 289 19 0 chr9 110627230 110627282 -7235345 + MER5A DNA MER1_type 92 144 -45 808 139 29 36 chr9 110627590 110627727 -7234900 - AluJo SINE Alu -176 136 1 224 197 49 0 chr9 110627902 110627963 -7234664 + (CATG)n Simple_repeat Simple_repeat 4 67 0 261 278 17 78 chr9 110629115 110629230 -7233397 + MIR3 SINE MIR 48 155 -53 607 155 14 74 chr9 110629586 110629734 -7232893 + MLT1K LTR MaLR 450 588 0 184 306 20 0 chr9 110629872 110629921 -7232706 + MIR3 SINE MIR 152 201 -7 262 340 58 51 chr9 110630841 110630997 -7231630 - MIR SINE MIR -25 237 81 211 309 123 0 chr9 110631180 110631261 -7231366 - MIR3 SINE MIR -17 191 101 333 373 16 0 chr9 110631554 110631680 -7230947 - MIR SINE MIR -110 152 25 192 135 0 0 chr9 110632255 110632292 -7230335 + (GGGA)n Simple_repeat Simple_repeat 2 38 0 467 201 0 117 chr9 110632632 110632688 -7229939 - L1MA10 LINE L1 -2 6332 6271 564 163 20 0 chr9 110632688 110632786 -7229841 - U13 snRNA snRNA 0 104 5 467 201 0 117 chr9 110632786 110632883 -7229744 - L1MA10 LINE L1 -63 6271 6197 354 336 27 34 chr9 110632908 110633057 -7229570 - MIR SINE MIR -113 149 2 1912 152 0 38 chr9 110633280 110633595 -7229032 - AluJb SINE Alu -9 303 1 2122 137 0 0 chr9 110633780 110634079 -7228548 + AluSx SINE Alu 1 299 -13 207 0 0 0 chr9 110634198 110634221 -7228406 + (TG)n Simple_repeat Simple_repeat 1 23 0 257 289 0 13 chr9 110634272 110634348 -7228279 + (TG)n Simple_repeat Simple_repeat 2 76 0 259 307 51 29 chr9 110634722 110634859 -7227768 + MIR3 SINE MIR 2 141 -67 240 263 219 22 chr9 110635283 110635420 -7227207 - MIR SINE MIR -90 172 9 723 147 0 70 chr9 110636487 110636630 -7225997 + FLAM_C SINE Alu 1 133 0 21 0 0 0 chr9 110637543 110637564 -7225063 + GC_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr9 110637774 110637800 -7224827 + GC_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr9 110637924 110637945 -7224682 + GC_rich Low_complexity Low_complexity 1 21 0 466 283 17 46 chr9 110639189 110639362 -7223265 - MIR SINE MIR -74 188 21 1618 121 36 0 chr9 110639956 110640205 -7222422 - AluSx SINE Alu -6 306 49 556 108 0 0 chr9 110640305 110640388 -7222239 - L1MA4 LINE L1 -15 6285 6203 1924 238 62 18 chr9 110640429 110641085 -7221542 - L1M4 LINE L1 -1658 4488 3804 392 215 9 117 chr9 110641103 110641167 -7221460 + L1MC5 LINE L1 7469 7538 -423 1552 158 9 77 chr9 110641167 110641490 -7221137 + AluSx SINE Alu 1 301 -11 392 215 9 117 chr9 110641490 110641557 -7221070 + L1MC5 LINE L1 7538 7611 -350 2380 81 0 3 chr9 110641557 110641867 -7220760 - AluY SINE Alu -1 310 2 392 215 9 117 chr9 110641867 110641976 -7220651 + L1MC5 LINE L1 7611 7671 -290 1908 133 10 0 chr9 110641976 110642270 -7220357 - AluJb SINE Alu -15 297 1 392 215 9 117 chr9 110642270 110642343 -7220284 + L1MC5 LINE L1 7671 7750 -211 208 404 77 0 chr9 110642645 110642798 -7219829 + L2 LINE L2 2564 2735 -579 2217 93 10 0 chr9 110642798 110643089 -7219538 - AluSx SINE Alu -18 294 1 208 404 77 0 chr9 110643089 110643118 -7219509 + L2 LINE L2 2735 2760 -554 310 292 46 39 chr9 110643732 110643862 -7218765 + MIR SINE MIR 17 147 -61 400 308 55 11 chr9 110643991 110644173 -7218454 + MIR SINE MIR 2 191 -71 2425 68 0 19 chr9 110644182 110644491 -7218136 + AluY SINE Alu 2 304 -7 1342 204 33 16 chr9 110644898 110645202 -7217425 + MER58B DNA MER1_type 28 336 -5 223 311 29 78 chr9 110645273 110645376 -7217251 + MIR SINE MIR 56 153 -109 849 161 13 0 chr9 110645776 110645925 -7216702 - FRAM SINE Alu -11 155 5 350 220 184 6 chr9 110645951 110646119 -7216508 + L2 LINE L2 2760 2957 -357 1136 96 0 0 chr9 110646155 110646291 -7216336 + AluSq/x SINE Alu 1 136 -177 2323 100 3 0 chr9 110646291 110646590 -7216037 + AluSx SINE Alu 1 300 -12 1820 169 0 20 chr9 110646892 110647029 -7215598 + AluJb SINE Alu 1 139 -173 2587 57 3 0 chr9 110647029 110647329 -7215298 + AluSp SINE Alu 1 301 -12 1820 169 0 20 chr9 110647329 110647492 -7215135 + AluJb SINE Alu 139 295 -17 256 191 95 23 chr9 110647496 110647582 -7215045 + L1MA7 LINE L1 6109 6199 -92 401 177 76 0 chr9 110647605 110647684 -7214943 + L1MA9 LINE L1 6184 6268 -44 892 172 16 54 chr9 110647684 110647870 -7214757 + AluJb SINE Alu 117 295 -17 251 238 100 12 chr9 110650421 110650532 -7212095 - MIR SINE MIR -62 146 62 436 253 103 6 chr9 110652931 110653105 -7209522 + MIR SINE MIR 31 221 -41 180 245 20 0 chr9 110653282 110653331 -7209296 - MIR3 SINE MIR -3 205 156 283 256 196 24 chr9 110653333 110653501 -7209126 + MER117 DNA MER1_type 1 197 0 1620 100 4 0 chr9 110655387 110655616 -7207011 + MER30 DNA MER1_type 1 230 0 374 294 31 19 chr9 110655705 110655865 -7206762 - MIR SINE MIR -90 172 11 279 160 27 53 chr9 110656584 110656659 -7205968 + GA-rich Low_complexity Low_complexity 3 75 0 252 234 0 75 chr9 110656726 110656833 -7205794 + (GGATG)n Simple_repeat Simple_repeat 4 102 0 1229 127 4 134 chr9 110657728 110657781 -7204846 + AluJb SINE Alu 90 148 -164 2544 67 0 25 chr9 110657781 110658097 -7204530 + AluY SINE Alu 1 308 -3 1229 127 4 134 chr9 110658097 110658296 -7204331 + AluJb SINE Alu 148 309 -3 286 284 60 26 chr9 110659757 110659873 -7202754 - MIR SINE MIR -111 151 32 239 236 127 75 chr9 110659887 110660019 -7202608 + MIR3 SINE MIR 17 157 -51 308 336 114 25 chr9 110661048 110661328 -7201299 + L1ME4a LINE L1 5794 6098 -23 1620 180 126 21 chr9 110661373 110661765 -7200862 + MLT1C LTR MaLR 2 442 -25 279 0 0 0 chr9 110661765 110661796 -7200831 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 1620 180 126 21 chr9 110661796 110661825 -7200802 + MLT1C LTR MaLR 442 467 0 2528 68 0 10 chr9 110661893 110662204 -7200423 + AluY SINE Alu 1 308 -3 250 267 176 15 chr9 110662421 110662552 -7200075 + MER117 DNA MER1_type 25 176 -21 241 203 34 17 chr9 110662566 110662625 -7200002 + MER117 DNA MER1_type 117 176 -21 272 291 39 0 chr9 110663531 110663634 -7198993 - L1ME4a LINE L1 -2 6119 6013 2041 127 49 0 chr9 110663704 110663988 -7198639 - AluSx SINE Alu -14 298 1 229 358 80 20 chr9 110663990 110664141 -7198486 - L1ME4a LINE L1 -233 5888 5729 260 272 109 0 chr9 110664190 110664282 -7198345 + MIR SINE MIR 49 150 -112 264 306 11 2 chr9 110664296 110664418 -7198209 + L1M1 LINE L1 5443 5565 -735 921 229 79 74 chr9 110664493 110664719 -7197908 - MLT1D LTR MaLR -83 422 199 2283 120 0 3 chr9 110664719 110665028 -7197599 - AluSx SINE Alu -4 308 1 921 229 79 74 chr9 110665028 110665055 -7197572 - MLT1D LTR MaLR -306 199 174 1930 156 3 3 chr9 110665055 110665361 -7197266 + AluSx SINE Alu 1 306 0 921 229 79 74 chr9 110665361 110665525 -7197102 - MLT1D LTR MaLR -331 174 1 850 308 66 12 chr9 110665527 110665861 -7196766 + L1ME3A LINE L1 5584 5935 -235 2388 97 0 0 chr9 110665861 110666161 -7196466 + AluSx SINE Alu 1 300 -12 1457 242 128 9 chr9 110666636 110666709 -7195918 - L1MDa LINE L1 -5280 1260 1197 1456 139 9 9 chr9 110666709 110666924 -7195703 + AluJo SINE Alu 85 299 -13 1457 242 128 9 chr9 110666924 110667297 -7195330 - L1MDa LINE L1 -5343 1197 761 1912 143 30 40 chr9 110667350 110667651 -7194976 + AluJb SINE Alu 1 298 -14 684 256 158 59 chr9 110667707 110668206 -7194421 - L1MDb LINE L1 -5431 1109 381 1149 150 0 67 chr9 110668206 110668399 -7194228 - AluJb SINE Alu -130 182 3 1365 236 6 66 chr9 110668401 110668498 -7194129 - L1MDb LINE L1 -6171 369 268 186 43 0 0 chr9 110668498 110668521 -7194106 + (TG)n Simple_repeat Simple_repeat 1 23 0 1365 236 6 66 chr9 110668521 110668802 -7193825 - L1MDb LINE L1 -6272 268 34 1098 262 102 8 chr9 110668801 110669262 -7193365 + L1M4 LINE L1 3939 4500 -1646 * 1089 191 28 58 chr9 110669251 110669394 -7193233 + L1M4 LINE L1 4904 5050 -1096 * 2102 139 7 13 chr9 110669394 110669704 -7192923 + AluSx SINE Alu 5 312 0 1089 191 28 58 chr9 110669704 110669885 -7192742 + L1M4 LINE L1 5050 5218 -928 4222 181 25 38 chr9 110669994 110670253 -7192374 + L1MC/D LINE L1 4346 4607 -1539 225 0 0 0 chr9 110670253 110670278 -7192349 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 2169 86 0 14 chr9 110670287 110670566 -7192061 - AluSx SINE Alu -37 275 1 4222 181 25 38 chr9 110670566 110670921 -7191706 + L1MC/D LINE L1 4615 4973 -1173 1914 152 0 17 chr9 110670921 110671230 -7191397 + AluJb SINE Alu 1 304 0 4222 181 25 38 chr9 110671230 110671650 -7190977 + L1MC/D LINE L1 4973 5378 -768 570 171 4 163 chr9 110671682 110671757 -7190870 + L1MC/D LINE L1 5354 5439 -803 2013 120 0 34 chr9 110671757 110672049 -7190578 + AluSq SINE Alu 1 282 -31 209 33 33 0 chr9 110672054 110672084 -7190543 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 570 171 4 163 chr9 110672084 110672135 -7190492 + L1MC/D LINE L1 5443 5500 -742 2552 76 0 0 chr9 110672135 110672436 -7190191 + AluSg SINE Alu 1 301 -9 570 171 4 163 chr9 110672436 110672560 -7190067 + L1MC/D LINE L1 5500 5570 -672 893 114 0 0 chr9 110672563 110672686 -7189941 - FLAM_C SINE Alu 0 143 21 1573 132 0 4 chr9 110672786 110673013 -7189614 + AluSg/x SINE Alu 80 305 -5 294 143 0 0 chr9 110673013 110673062 -7189565 + (TA)n Simple_repeat Simple_repeat 2 50 0 324 273 11 0 chr9 110673064 110673152 -7189475 + HAL1 LINE L1 1523 1611 -896 877 148 0 8 chr9 110673159 110673287 -7189340 + FLAM_C SINE Alu 1 127 -16 1499 153 84 49 chr9 110673462 110673521 -7189106 + MER7A DNA MER2_type 21 76 -2962 2123 130 0 3 chr9 110673521 110673820 -7188807 + AluSx SINE Alu 1 298 -14 1499 153 84 49 chr9 110673820 110674068 -7188559 + MER7A DNA MER2_type 76 337 -9 527 173 55 54 chr9 110674595 110674742 -7187885 + MLT1I LTR MaLR 64 188 -221 814 272 75 11 chr9 110674777 110675056 -7187571 + MLT1I LTR MaLR 113 409 0 1899 92 0 30 chr9 110675156 110675418 -7187209 - AluSx SINE Alu -6 306 53 2365 96 3 0 chr9 110675436 110675737 -7186890 - AluSq SINE Alu -11 302 1 475 273 45 25 chr9 110675797 110675995 -7186632 - L2 LINE L2 0 3313 3112 299 205 197 17 chr9 110676588 110676705 -7185922 - L2 LINE L2 -15 3298 3161 1924 156 10 0 chr9 110676820 110677109 -7185518 - AluJo SINE Alu -20 292 1 321 82 0 0 chr9 110678169 110678218 -7184409 + (CGG)n Simple_repeat Simple_repeat 3 51 0 1978 158 3 3 chr9 110680714 110681018 -7181609 + AluJo SINE Alu 8 311 -1 21 36 0 0 chr9 110682425 110682453 -7180174 + AT_rich Low_complexity Low_complexity 1 28 0 705 124 26 9 chr9 110682456 110682569 -7180058 - FLAM_C SINE Alu -24 119 5 2232 131 0 0 chr9 110682990 110683288 -7179339 + AluSq SINE Alu 1 298 -15 2319 104 0 0 chr9 110683331 110683620 -7179007 + AluSx SINE Alu 1 289 -23 2108 137 10 0 chr9 110683625 110683918 -7178709 + AluSx SINE Alu 1 296 -16 413 289 59 15 chr9 110683918 110684053 -7178574 + Charlie8 DNA MER1_type 136 276 -2141 573 163 0 0 chr9 110684291 110684389 -7178238 + MER103 DNA DNA 6 103 -63 851 182 51 28 chr9 110684734 110684910 -7177717 - AluJb SINE Alu -6 306 127 180 352 0 28 chr9 110684989 110685060 -7177567 - L2 LINE L2 -18 3254 3186 745 178 0 20 chr9 110685136 110685288 -7177339 - AluJb SINE Alu -5 307 159 2416 91 3 0 chr9 110685494 110685792 -7176835 - AluY SINE Alu -11 300 2 2324 117 0 0 chr9 110685800 110686107 -7176520 - AluSc SINE Alu -2 307 1 231 317 0 0 chr9 110686298 110686358 -7176269 - L2 LINE L2 -8 3305 3246 500 287 25 32 chr9 110686904 110687061 -7175566 + MIR SINE MIR 2 157 -105 711 205 78 29 chr9 110687076 110687281 -7175346 + L1ME3A LINE L1 5955 6169 -1 198 297 40 0 chr9 110687281 110687355 -7175272 - MIR SINE MIR -5 257 181 227 262 49 0 chr9 110687404 110687465 -7175162 + MIR SINE MIR 151 214 -48 2172 106 3 3 chr9 110688079 110688388 -7174239 - AluSx SINE Alu 0 309 1 324 120 0 0 chr9 110688401 110688451 -7174176 + (TA)n Simple_repeat Simple_repeat 2 51 0 1725 169 12 35 chr9 110688451 110688759 -7173868 - AluJo SINE Alu -9 303 1 282 29 0 0 chr9 110688761 110688796 -7173831 + (T)n Simple_repeat Simple_repeat 1 35 0 234 143 0 24 chr9 110688796 110688838 -7173789 - MER4E LTR ERV1 -72 707 667 240 228 127 0 chr9 110688841 110688920 -7173707 + MER113 DNA MER1_type? 124 212 -309 307 259 86 43 chr9 110688991 110689130 -7173497 - MIR3 SINE MIR -49 159 15 224 250 0 17 chr9 110689685 110689745 -7172882 + MIR SINE MIR 28 86 -176 465 261 62 6 chr9 110689822 110689907 -7172720 + MIR SINE MIR 66 145 -117 1949 82 0 0 chr9 110689907 110690140 -7172487 + AluSg SINE Alu 1 233 -77 465 261 62 6 chr9 110690140 110690215 -7172412 + MIR SINE MIR 145 235 -27 2310 110 0 0 chr9 110690694 110690986 -7171641 + AluSx SINE Alu 1 292 -20 281 250 184 0 chr9 110691104 110691180 -7171447 - MER58A DNA MER1_type -17 90 1 588 326 97 44 chr9 110691180 110691279 -7171348 + L2 LINE L2 2605 2697 -616 1656 172 13 13 chr9 110691279 110691582 -7171045 - AluJo SINE Alu -3 309 7 588 326 97 44 chr9 110691582 110692148 -7170479 + L2 LINE L2 2697 3309 -4 191 196 143 0 chr9 110692714 110692770 -7169857 - L3 LINE CR1 -19 1558 1495 1574 172 0 19 chr9 110692934 110693045 -7169582 + AluJo SINE Alu 26 138 -174 2479 81 0 13 chr9 110693045 110693353 -7169274 + AluSq SINE Alu 1 304 -9 1574 172 0 19 chr9 110693353 110693497 -7169130 + AluJo SINE Alu 138 276 -36 2473 83 3 0 chr9 110693689 110693990 -7168637 + AluSp SINE Alu 1 302 -11 694 163 143 41 chr9 110695254 110695401 -7167226 - FRAM SINE Alu 0 166 5 3380 73 57 13 chr9 110695520 110695998 -7166629 - L1MA1 LINE L1 0 6302 5804 198 203 72 58 chr9 110696846 110696915 -7165712 + MIR SINE MIR 81 150 -112 688 225 0 0 chr9 110697626 110697755 -7164872 + FLAM_A SINE Alu 1 129 -4 2284 98 0 0 chr9 110697755 110698042 -7164585 + AluY SINE Alu 1 287 -24 321 256 0 0 chr9 110698055 110698145 -7164482 + L1MC4 LINE L1 6614 6703 -1339 297 128 0 0 chr9 110698836 110698883 -7163744 + (TCCC)n Simple_repeat Simple_repeat 4 50 0 856 171 14 0 chr9 110699242 110699382 -7163245 - AluJb SINE Alu -12 300 159 1812 159 30 14 chr9 110699435 110699730 -7162897 + AluJo SINE Alu 1 300 -12 263 240 100 10 chr9 110699749 110699849 -7162778 - MER58 DNA MER1_type -2151 269 161 658 171 14 48 chr9 110700442 110700546 -7162081 + Tigger7 DNA MER2_type 1 100 -2387 2495 81 0 0 chr9 110700546 110700844 -7161783 - AluSg SINE Alu -12 298 1 658 171 14 48 chr9 110700844 110700885 -7161742 + Tigger7 DNA MER2_type 100 141 -2346 638 196 0 0 chr9 110700918 110701025 -7161602 + Tigger7 DNA MER2_type 2381 2487 0 239 211 28 119 chr9 110701748 110701809 -7160818 + Charlie2b DNA MER1_type 568 616 -2166 2404 107 0 0 chr9 110701809 110702117 -7160510 + AluSx SINE Alu 1 308 -4 239 211 28 119 chr9 110702117 110702164 -7160463 + Charlie2b DNA MER1_type 616 666 -2116 458 223 78 30 chr9 110702285 110702451 -7160176 + Charlie2a DNA MER1_type 1477 1650 -1212 1914 189 88 2 chr9 110702558 110702977 -7159650 + L1MD2 LINE L1 5554 6008 -351 328 300 80 47 chr9 110702986 110703136 -7159491 - MIR3 SINE MIR -17 191 37 825 249 16 11 chr9 110703146 110703335 -7159292 + MIR SINE MIR 6 195 -67 2216 109 13 7 chr9 110703364 110703668 -7158959 + AluSc SINE Alu 1 306 -3 477 207 101 56 chr9 110703675 110703854 -7158773 + MER112 DNA MER1_type 30 216 -44 458 250 81 0 chr9 110703991 110704115 -7158512 + L2 LINE L2 3137 3270 -2 320 277 8 59 chr9 110704257 110704376 -7158251 + MIR SINE MIR 114 226 -36 2327 105 0 0 chr9 110704446 110704750 -7157877 + AluSx SINE Alu 1 304 -8 21 57 0 0 chr9 110704788 110704823 -7157804 + AT_rich Low_complexity Low_complexity 1 35 0 2499 68 3 0 chr9 110705283 110705579 -7157048 + AluSp SINE Alu 1 297 -16 1689 154 31 53 chr9 110705697 110706016 -7156611 - AluSx SINE Alu 0 312 1 26 30 0 0 chr9 110706024 110706057 -7156570 + AT_rich Low_complexity Low_complexity 1 33 0 240 303 141 47 chr9 110710556 110710790 -7151837 + L3 LINE CR1 966 1221 -356 267 276 60 60 chr9 110714686 110714820 -7147807 - L2 LINE L2 -3 3310 3177 518 195 178 19 chr9 110715795 110716031 -7146596 - MER46C DNA MER2_type -5 333 6 230 297 0 0 chr9 110716779 110716801 -7145826 + MER3 DNA MER1_type 27 48 -161 522 278 86 0 chr9 110716801 110716963 -7145664 - MER3 DNA MER1_type -1 208 33 24 67 0 0 chr9 110718020 110718065 -7144562 + AT_rich Low_complexity Low_complexity 1 45 0 230 250 130 11 chr9 110718139 110718231 -7144396 - L1MC4 LINE L1 -124 7918 7816 180 0 0 0 chr9 110718571 110718591 -7144036 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1678 162 71 3 chr9 110719571 110719910 -7142717 + L1MB4 LINE L1 5819 6180 0 1052 216 22 56 chr9 110719954 110720222 -7142405 + AluJo SINE Alu 7 265 -47 2424 86 0 0 chr9 110720371 110720674 -7141953 + AluSg SINE Alu 1 303 -7 2182 113 17 7 chr9 110720787 110721089 -7141538 + AluSx SINE Alu 1 305 -7 2082 131 3 3 chr9 110721096 110721393 -7141234 + AluSx SINE Alu 1 297 -15 30 45 0 0 chr9 110721861 110721905 -7140722 + AT_rich Low_complexity Low_complexity 1 44 0 23 0 0 0 chr9 110721956 110721979 -7140648 + AT_rich Low_complexity Low_complexity 1 23 0 264 268 63 55 chr9 110722969 110723084 -7139543 + MIR3 SINE MIR 41 156 -52 285 284 149 23 chr9 110723084 110723249 -7139378 + MER5A DNA MER1_type 1 173 -5 1236 115 155 5 chr9 110723260 110723357 -7139270 - MER30 DNA MER1_type 0 230 149 387 0 0 0 chr9 110723357 110723400 -7139227 + (TG)n Simple_repeat Simple_repeat 2 44 0 1236 115 155 5 chr9 110723400 110723502 -7139125 - MER30 DNA MER1_type -81 149 1 1042 85 15 0 chr9 110723553 110723683 -7138944 + AluSq/x SINE Alu 1 132 -181 2030 115 39 0 chr9 110723685 110723964 -7138663 + AluSq SINE Alu 1 290 -23 334 119 15 15 chr9 110726809 110726876 -7135751 + (CA)n Simple_repeat Simple_repeat 1 67 0 2521 74 3 0 chr9 110727508 110727817 -7134810 - AluSp SINE Alu -3 310 1 367 289 44 0 chr9 110731861 110731975 -7130652 + MIR3 SINE MIR 81 199 -9 1839 131 168 47 chr9 110738039 110738201 -7124426 + MSTA LTR MaLR 1 142 -286 2371 67 0 0 chr9 110738201 110738510 -7124117 + AluSp SINE Alu 1 309 0 1839 131 168 47 chr9 110738510 110738728 -7123899 + MSTA LTR MaLR 142 428 0 335 262 24 12 chr9 110738747 110738831 -7123796 + L1M4 LINE L1 3693 3777 -2369 387 60 45 0 chr9 110738851 110738918 -7123709 + (TCTA)n Simple_repeat Simple_repeat 1 70 0 1546 78 5 5 chr9 110739018 110739209 -7123418 + AluSc SINE Alu 84 274 -35 267 104 0 0 chr9 110739211 110739259 -7123368 + (TAAAA)n Simple_repeat Simple_repeat 4 51 0 1101 154 30 55 chr9 110739324 110739525 -7123102 + AluJb SINE Alu 5 200 -112 2162 108 3 16 chr9 110739699 110740004 -7122623 - AluSq SINE Alu -9 304 4 2286 89 23 0 chr9 110740288 110740592 -7122035 - AluY SINE Alu 0 311 1 1933 154 3 10 chr9 110740592 110740896 -7121731 - AluSx SINE Alu -9 303 1 1981 143 3 26 chr9 110740896 110741203 -7121424 - AluJo SINE Alu -11 301 1 2007 124 13 20 chr9 110741736 110742042 -7120585 - AluSg SINE Alu -6 304 1 315 0 0 0 chr9 110742062 110742097 -7120530 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2178 62 0 0 chr9 110742100 110742356 -7120271 - AluY SINE Alu -17 294 39 839 172 113 68 chr9 110742360 110742581 -7120046 - L1M4 LINE L1 -1377 4769 4539 489 303 6 0 chr9 110742578 110742756 -7119871 - L1M4 LINE L1 -1891 4255 4077 * 2236 92 0 74 chr9 110742973 110743120 -7119507 + AluSx SINE Alu 1 111 -201 2248 114 3 0 chr9 110743120 110743419 -7119208 + AluSq SINE Alu 1 300 -13 2236 92 0 74 chr9 110743419 110743608 -7119019 + AluSx SINE Alu 111 312 0 1648 223 58 41 chr9 110743615 110744082 -7118545 + MER82 DNA MER2_type 179 653 0 195 314 70 0 chr9 110744271 110744357 -7118270 + MIR SINE MIR 81 172 -90 1060 81 7 0 chr9 110746162 110746298 -7116329 - AluSq/x SINE Alu -176 137 1 801 196 42 21 chr9 110746298 110746487 -7116140 - MLT1D LTR MaLR -312 193 1 1002 178 97 35 chr9 110746487 110746746 -7115881 - L1ME LINE L1 -515 5651 5377 998 168 0 0 chr9 110746998 110747165 -7115462 - AluJb SINE Alu -11 301 135 2210 94 0 3 chr9 110747166 110747463 -7115164 - AluSx SINE Alu -16 296 1 205 268 77 111 chr9 110748158 110748375 -7114252 + MIR SINE MIR 54 262 0 1821 141 14 24 chr9 110748478 110748775 -7113852 + AluJb SINE Alu 1 294 -18 411 21 0 0 chr9 110748775 110748823 -7113804 + (TA)n Simple_repeat Simple_repeat 2 49 0 657 86 0 0 chr9 110748956 110749049 -7113578 + (TCCC)n Simple_repeat Simple_repeat 4 96 0 826 157 15 0 chr9 110749049 110749183 -7113444 - AluSg/x SINE Alu -21 291 156 2324 87 6 3 chr9 110749222 110749533 -7113094 - AluSx SINE Alu 0 312 1 206 62 31 0 chr9 110749844 110749876 -7112751 + (TG)n Simple_repeat Simple_repeat 2 34 0 347 189 0 0 chr9 110749887 110749977 -7112650 - L1MCa LINE L1 -5003 1423 1334 351 138 0 0 chr9 110749977 110750035 -7112592 - Alu SINE Alu 0 301 244 1122 135 0 12 chr9 110750036 110750206 -7112421 + AluJb SINE Alu 91 258 -54 216 0 0 0 chr9 110750207 110750231 -7112396 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 22 56 0 0 chr9 110750253 110750289 -7112338 + AT_rich Low_complexity Low_complexity 1 36 0 2409 59 0 10 chr9 110750290 110750595 -7112032 + AluY SINE Alu 1 302 -9 1065 251 93 23 chr9 110750653 110750936 -7111691 + L1MCb LINE L1 77 402 -5643 2313 61 34 0 chr9 110750936 110751229 -7111398 + AluSc SINE Alu 1 303 -6 1065 251 93 23 chr9 110751229 110751375 -7111252 + L1MCb LINE L1 402 536 -5509 226 245 0 0 chr9 110751497 110751550 -7111077 + L1MCb LINE L1 570 622 -5423 372 263 17 0 chr9 110751645 110751763 -7110864 + L1MCb LINE L1 765 884 -5161 1902 132 3 22 chr9 110751763 110752081 -7110546 + AluJb SINE Alu 1 312 0 189 0 0 0 chr9 110752781 110752802 -7109825 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 549 200 0 0 chr9 110752820 110752925 -7109702 + L1MCb LINE L1 881 985 -5060 2293 92 3 0 chr9 110752930 110753236 -7109391 + AluSq SINE Alu 1 307 -6 488 218 0 0 chr9 110753417 110753518 -7109109 + FRAM SINE Alu 71 171 -5 1600 205 0 10 chr9 110753523 110753825 -7108802 + AluJb SINE Alu 2 300 -12 1077 155 41 92 chr9 110753825 110754096 -7108531 + L1MA10 LINE L1 6077 6333 -1 2222 71 0 0 chr9 110754106 110754422 -7108205 + AluY SINE Alu 1 316 0 2304 109 0 0 chr9 110754427 110754739 -7107888 + AluSx SINE Alu 1 312 0 29 0 0 0 chr9 110754740 110754769 -7107858 + AT_rich Low_complexity Low_complexity 1 29 0 2247 100 3 0 chr9 110754788 110755099 -7107528 + AluSq SINE Alu 1 312 -1 2175 102 7 0 chr9 110755645 110755948 -7106679 + AluSx SINE Alu 1 305 -7 230 308 0 0 chr9 110756124 110756189 -7106438 + MIR SINE MIR 117 181 -81 225 231 88 22 chr9 110756754 110756845 -7105782 - L2 LINE L2 -24 3248 3152 222 319 80 18 chr9 110757020 110757133 -7105494 + MIR SINE MIR 14 133 -129 254 342 68 12 chr9 110757188 110757349 -7105278 + MLT1L LTR MaLR 446 615 0 313 329 119 0 chr9 110757349 110757492 -7105135 + MIR SINE MIR 103 262 0 1739 162 6 19 chr9 110757660 110757974 -7104653 - AluSx SINE Alu -2 310 1 1942 107 7 0 chr9 110757989 110758308 -7104319 - AluSx SINE Alu 0 321 1 414 319 37 6 chr9 110758371 110758534 -7104093 - MIR SINE MIR -46 216 49 452 257 19 0 chr9 110758859 110758964 -7103663 + L2 LINE L2 3163 3269 -3 252 258 8 42 chr9 110760234 110760354 -7102273 + GA-rich Low_complexity Low_complexity 3 118 0 21 0 0 0 chr9 110761562 110761583 -7101044 + GC_rich Low_complexity Low_complexity 1 21 0 198 253 42 21 chr9 110762412 110762507 -7100120 - MIR3 SINE MIR -31 177 81 220 246 14 43 chr9 110763486 110763555 -7099072 + GA-rich Low_complexity Low_complexity 3 69 0 296 346 3 24 chr9 110764683 110764926 -7097701 + C-rich Low_complexity Low_complexity 1 237 0 21 71 0 0 chr9 110764929 110764971 -7097656 + GC_rich Low_complexity Low_complexity 1 42 0 232 282 13 13 chr9 110765624 110765702 -7096925 + GA-rich Low_complexity Low_complexity 1 78 0 277 286 0 0 chr9 110767359 110767429 -7095198 - MIR SINE MIR -106 156 87 298 324 107 6 chr9 110768257 110768430 -7094197 + MIR SINE MIR 44 232 -30 278 368 18 0 chr9 110769114 110769228 -7093399 - MIR SINE MIR -24 238 123 2253 60 0 54 chr9 110769353 110769691 -7092936 + AluY SINE Alu 8 311 0 1143 113 0 0 chr9 110769691 110769851 -7092776 + AluSg/x SINE Alu 132 291 -19 2432 62 0 3 chr9 110769851 110770155 -7092472 + AluY SINE Alu 1 303 -8 2000 132 10 3 chr9 110771380 110771684 -7090943 + AluSx SINE Alu 1 306 -6 396 0 0 0 chr9 110771692 110771736 -7090891 + (CA)n Simple_repeat Simple_repeat 2 45 0 241 122 24 0 chr9 110772451 110772492 -7090135 + MIR SINE MIR 212 253 -9 1995 117 45 0 chr9 110772516 110772806 -7089821 - AluSx SINE Alu -9 303 1 212 305 188 16 chr9 110772854 110772982 -7089645 - MIR SINE MIR -107 155 6 1559 119 43 138 chr9 110773820 110773981 -7088646 - AluSx SINE Alu -2 300 125 2321 84 3 0 chr9 110773981 110774289 -7088338 - AluSp SINE Alu -4 309 1 1559 119 43 138 chr9 110774289 110774321 -7088306 - AluSx SINE Alu -177 125 92 2257 109 0 3 chr9 110774321 110774632 -7087995 - AluSg SINE Alu 0 310 1 1559 119 43 138 chr9 110774632 110774764 -7087863 - AluSx SINE Alu -210 92 5 369 0 0 0 chr9 110774812 110774853 -7087774 + (TG)n Simple_repeat Simple_repeat 2 42 0 22 56 0 0 chr9 110775095 110775131 -7087496 + AT_rich Low_complexity Low_complexity 1 36 0 2181 109 3 0 chr9 110775196 110775499 -7087128 - AluSq SINE Alu -9 304 1 202 323 52 10 chr9 110776003 110776099 -7086528 - MIR SINE MIR -131 131 32 2340 60 3 38 chr9 110776545 110776859 -7085768 + AluY SINE Alu 1 303 -8 671 192 40 0 chr9 110776869 110776994 -7085633 + FLAM_A SINE Alu 1 130 -3 250 267 70 23 chr9 110778176 110778262 -7084365 + L2 LINE L2 3182 3271 -1 301 199 15 132 chr9 110778386 110778522 -7084105 + L1 LINE L1 3143 3262 -2884 548 274 100 69 chr9 110778588 110779128 -7083499 + L1MC/D LINE L1 4566 5088 -1076 2306 106 0 0 chr9 110779128 110779440 -7083187 + AluSx SINE Alu 1 312 0 548 274 100 69 chr9 110779440 110779563 -7083064 + L1MC/D LINE L1 5088 5206 -958 1869 171 0 0 chr9 110779563 110779872 -7082755 + AluJb SINE Alu 1 309 -3 548 274 100 69 chr9 110779872 110780089 -7082538 + L1MC/D LINE L1 5206 5487 -677 2083 115 7 0 chr9 110780093 110780388 -7082239 + AluSp SINE Alu 1 297 -16 2080 102 7 30 chr9 110780392 110780697 -7081930 + AluSx SINE Alu 1 298 -14 766 314 21 30 chr9 110780710 110781044 -7081583 + L1MEc LINE L1 37 367 -6029 2312 68 0 7 chr9 110781568 110781863 -7080764 + AluY SINE Alu 7 299 -12 1820 135 37 0 chr9 110781962 110782259 -7080368 + AluSx SINE Alu 1 308 -4 632 271 71 29 chr9 110782619 110782859 -7079768 + MIR SINE MIR 1 250 -12 2129 131 0 3 chr9 110782885 110783303 -7079324 + AluSq SINE Alu 1 417 0 2403 63 3 0 chr9 110783685 110783988 -7078639 - AluSp SINE Alu -9 304 1 266 248 200 16 chr9 110786289 110786414 -7076213 + MIR3 SINE MIR 54 201 -7 317 274 42 0 chr9 110787303 110787398 -7075229 + L1MC/D LINE L1 5543 5641 -2167 1968 165 105 105 chr9 110787422 110787697 -7074930 + Charlie1a DNA MER1_type 30 304 -2457 2167 90 0 31 chr9 110787697 110788019 -7074608 - AluSx SINE Alu 0 312 1 1968 165 105 105 chr9 110788019 110788372 -7074255 + Charlie1a DNA MER1_type 303 658 -797 1177 123 0 0 chr9 110788372 110788542 -7074085 - AluSq SINE Alu -11 302 133 444 158 45 75 chr9 110788571 110788663 -7073964 + Charlie1a DNA MER1_type 715 803 -1958 2018 152 0 0 chr9 110788663 110788966 -7073661 - AluSx SINE Alu -9 303 1 444 158 45 75 chr9 110788966 110789006 -7073621 + Charlie1a DNA MER1_type 803 843 -612 188 245 0 0 chr9 110789106 110789155 -7073472 + L2 LINE L2 3265 3313 0 * 755 288 23 43 chr9 110789149 110789244 -7073383 + L3 LINE CR1 1177 1272 -305 2196 89 7 7 chr9 110789244 110789548 -7073079 + AluSq SINE Alu 2 305 -8 2639 33 0 0 chr9 110789548 110789849 -7072778 + AluY SINE Alu 1 303 -8 755 288 23 43 chr9 110789849 110790054 -7072573 + L3 LINE CR1 1270 1472 -105 381 194 0 0 chr9 110790398 110790465 -7072162 + L2 LINE L2 3243 3309 -4 214 250 62 21 chr9 110790597 110790693 -7071934 - L2 LINE L2 -816 2498 2399 1614 68 0 10 chr9 110792716 110792923 -7069704 - AluY SINE Alu -106 205 1 2081 142 0 0 chr9 110792927 110793230 -7069397 - AluSx SINE Alu -9 303 1 44 0 0 0 chr9 110793336 110793380 -7069247 + AT_rich Low_complexity Low_complexity 1 44 0 2070 136 0 0 chr9 110793436 110793738 -7068889 - AluSx SINE Alu -10 302 1 903 246 174 19 chr9 110793888 110794250 -7068377 - L1MC4a LINE L1 -1804 6004 5587 343 171 0 34 chr9 110794288 110794370 -7068257 + (TATATG)n Simple_repeat Simple_repeat 4 83 0 1728 174 21 0 chr9 110794370 110794658 -7067969 - AluJb SINE Alu -18 294 1 784 277 14 53 chr9 110794685 110794892 -7067735 - L1MC4a LINE L1 -2212 5596 5382 199 0 0 0 chr9 110794892 110794914 -7067713 + (TTTTG)n Simple_repeat Simple_repeat 2 170 0 2356 81 3 3 chr9 110794914 110795199 -7067428 - AluSp SINE Alu -28 285 1 784 277 14 53 chr9 110795199 110795272 -7067355 - L1MC4a LINE L1 -2424 5384 5326 323 217 72 0 chr9 110795425 110795508 -7067119 - MER5B DNA MER1_type -40 138 50 518 147 10 29 chr9 110795524 110795626 -7067001 - MER92B LTR ERV1 -24 612 513 2244 127 0 3 chr9 110795669 110795977 -7066650 - AluSx SINE Alu -5 307 1 2169 124 0 3 chr9 110796240 110796530 -7066097 - AluSg SINE Alu -13 297 9 634 217 8 8 chr9 110796937 110797066 -7065561 + MER6A DNA MER2_type 1 129 -476 * 655 95 7 139 chr9 110797064 110797201 -7065426 + MER6A DNA MER2_type 487 605 0 2105 112 0 36 chr9 110797299 110797602 -7065025 - AluSx SINE Alu -20 292 1 28 61 0 0 chr9 110797841 110797890 -7064737 + AT_rich Low_complexity Low_complexity 1 49 0 685 132 14 97 chr9 110798177 110798321 -7064306 + AluJo SINE Alu 3 134 -178 29 70 0 0 chr9 110798436 110798493 -7064134 + AT_rich Low_complexity Low_complexity 1 57 0 1421 189 54 30 chr9 110799061 110799357 -7063270 - AluJo SINE Alu -9 303 1 185 209 70 0 chr9 110801072 110801115 -7061512 + L2 LINE L2 2732 2777 -537 206 175 0 70 chr9 110801167 110801224 -7061403 + (TATG)n Simple_repeat Simple_repeat 4 56 0 318 223 126 45 chr9 110801226 110801485 -7061142 - Charlie7 DNA MER1_type -79 2533 2250 2269 115 0 0 chr9 110801485 110801781 -7060846 - AluSq SINE Alu -17 296 1 287 206 0 29 chr9 110801804 110801872 -7060755 + MLT1F LTR MaLR 1 66 -476 1130 195 38 70 chr9 110801880 110802369 -7060258 + MER54A LTR ERVL 29 789 -112 1153 125 0 6 chr9 110802544 110802712 -7059915 - AluSc SINE Alu -5 304 138 259 196 0 18 chr9 110802874 110802930 -7059697 + L2 LINE L2 3218 3272 0 252 256 0 44 chr9 110803095 110803172 -7059455 - MIR SINE MIR -52 156 82 189 0 0 0 chr9 110803367 110803388 -7059239 + (CCCCG)n Simple_repeat Simple_repeat 1 21 0 324 0 0 0 chr9 110803752 110803788 -7058839 + (CCG)n Simple_repeat Simple_repeat 3 38 0 36 100 0 0 chr9 110803816 110803936 -7058691 + GC_rich Low_complexity Low_complexity 1 120 0 507 175 58 0 chr9 110804538 110804641 -7057986 + MIR3 SINE MIR 82 190 -18 21 57 0 0 chr9 110805390 110805425 -7057202 + AT_rich Low_complexity Low_complexity 1 35 0 2104 93 43 4 chr9 110806650 110806930 -7055697 - AluSq SINE Alu -9 304 14 364 274 60 17 chr9 110807055 110807172 -7055455 - MIR SINE MIR -136 126 5 725 267 5 0 chr9 110807249 110807444 -7055183 - L1M4 LINE L1 -1830 4316 4121 866 241 32 32 chr9 110807459 110807675 -7054952 + MIR SINE MIR 34 249 -13 1975 103 75 31 chr9 110807817 110808109 -7054518 - AluSg SINE Alu -5 305 1 388 188 43 0 chr9 110808257 110808326 -7054301 - MLT1G LTR MaLR -314 276 205 2666 44 0 19 chr9 110808434 110808751 -7053876 + AluY SINE Alu 1 311 0 2014 128 9 59 chr9 110809130 110809451 -7053176 - AluSx SINE Alu -7 305 1 476 258 155 7 chr9 110811149 110811304 -7051323 + MIR3 SINE MIR 18 195 -13 223 273 0 0 chr9 110811328 110811383 -7051244 + L2 LINE L2 3213 3267 -5 2294 139 0 0 chr9 110811549 110811859 -7050768 - AluSx SINE Alu -2 310 1 1976 133 3 13 chr9 110811880 110812180 -7050447 - AluJb SINE Alu -8 304 8 1989 136 52 0 chr9 110812392 110812679 -7049948 + AluSq SINE Alu 1 302 -11 184 206 0 0 chr9 110813018 110813052 -7049575 + L2 LINE L2 3230 3263 -9 180 0 0 0 chr9 110813092 110813112 -7049515 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2085 131 10 0 chr9 110813114 110813404 -7049223 - AluSx SINE Alu -18 294 2 2218 200 7 11 chr9 110813462 110813912 -7048715 - MER74A LTR ERVL -95 463 16 2041 112 0 43 chr9 110813916 110814219 -7048408 + AluSg SINE Alu 3 292 -18 257 310 95 17 chr9 110814254 110814370 -7048257 - L2 LINE L2 -27 3286 3162 230 261 68 23 chr9 110814394 110814482 -7048145 - L2 LINE L2 -5 3308 3217 240 310 103 26 chr9 110814650 110814766 -7047861 - L2 LINE L2 -27 3286 3162 918 267 76 45 chr9 110814790 110814959 -7047668 - L2 LINE L2 -5 3308 3146 2211 135 0 0 chr9 110814959 110815270 -7047357 + AluSq SINE Alu 3 313 0 918 267 76 45 chr9 110815270 110815516 -7047111 - L2 LINE L2 -167 3146 2909 3879 118 39 3 chr9 110815516 110816128 -7046499 + MER51A LTR ERV1 1 634 0 918 267 76 45 chr9 110816128 110816370 -7046257 - L2 LINE L2 -404 2909 2561 640 87 0 48 chr9 110816473 110816576 -7046051 + MER4A LTR ERV1 1 98 -566 355 96 19 0 chr9 110816576 110816628 -7045999 + MER4A LTR ERV1 261 313 -351 2508 64 0 49 chr9 110816679 110817006 -7045621 - AluY SINE Alu 0 311 1 22 56 0 0 chr9 110817007 110817043 -7045584 + AT_rich Low_complexity Low_complexity 1 36 0 216 0 0 0 chr9 110817065 110817089 -7045538 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1196 135 0 12 chr9 110817090 110817260 -7045367 - AluJb SINE Alu -54 258 91 353 138 0 0 chr9 110817261 110817319 -7045308 + Alu SINE Alu 245 302 0 347 189 0 0 chr9 110817319 110817409 -7045218 + L1MCa LINE L1 1334 1423 -5003 206 62 31 0 chr9 110817420 110817452 -7045175 + (CA)n Simple_repeat Simple_repeat 2 34 0 334 188 38 50 chr9 110817452 110817532 -7045095 + L1MCa LINE L1 1384 1462 -4964 2059 113 3 77 chr9 110817560 110817748 -7044879 - AluSx SINE Alu -1 311 157 2282 110 3 0 chr9 110817748 110818047 -7044580 - AluSq SINE Alu -13 300 1 2059 113 3 77 chr9 110818047 110818194 -7044433 - AluSx SINE Alu -155 157 1 2092 136 0 26 chr9 110818451 110818587 -7044040 + AluSx SINE Alu 1 139 -173 2155 107 7 0 chr9 110818587 110818867 -7043760 + AluY SINE Alu 1 282 -29 210 37 0 0 chr9 110818870 110818897 -7043730 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2092 136 0 26 chr9 110818897 110819066 -7043561 + AluSx SINE Alu 141 302 -10 572 183 100 0 chr9 110819442 110819562 -7043065 + FRAM SINE Alu 29 160 -16 1273 170 107 26 chr9 110819747 110819857 -7042770 + AluJb SINE Alu 1 101 -211 1612 144 38 84 chr9 110819857 110820177 -7042450 + AluJo SINE Alu 1 305 -7 1273 170 107 26 chr9 110820177 110820337 -7042290 + AluJb SINE Alu 101 293 -19 1459 162 4 4 chr9 110820589 110820830 -7041797 + AluSc SINE Alu 1 241 -68 356 286 0 0 chr9 110820833 110821116 -7041511 + G-rich Low_complexity Low_complexity 1 283 0 992 167 49 34 chr9 110821610 110821653 -7040974 + AluJb SINE Alu 87 128 -184 1612 144 38 84 chr9 110821653 110821973 -7040654 + AluJo SINE Alu 1 305 -7 992 167 49 34 chr9 110821973 110822133 -7040494 + AluJb SINE Alu 128 293 -19 2383 97 0 0 chr9 110822385 110822684 -7039943 + AluSc SINE Alu 1 299 -10 2102 117 17 0 chr9 110822709 110822999 -7039628 + AluSc SINE Alu 1 295 -14 2230 90 17 27 chr9 110823041 110823341 -7039286 - AluY SINE Alu -14 297 1 1775 126 29 18 chr9 110823344 110823622 -7039005 - AluSx SINE Alu -11 301 21 2231 117 3 3 chr9 110824034 110824334 -7038293 - AluSx SINE Alu -12 300 1 2236 109 0 0 chr9 110825689 110826015 -7036612 + AluSg SINE Alu 1 310 0 2042 104 24 14 chr9 110827765 110828054 -7034573 + AluSx SINE Alu 21 312 0 1988 136 0 17 chr9 110828057 110828344 -7034283 - AluJo SINE Alu -30 282 1 2509 81 0 0 chr9 110829970 110830265 -7032362 + AluSx SINE Alu 1 295 -17 852 181 102 204 chr9 110830833 110831316 -7031311 + L2 LINE L2 2021 2478 -836 421 236 3 0 chr9 110831316 110831427 -7031200 + L1 LINE L1 4145 4257 -1889 852 181 102 204 chr9 110831427 110831810 -7030817 + L2 LINE L2 2478 2898 -416 506 293 6 37 chr9 110831813 110831900 -7030727 - MIR SINE MIR -8 254 173 2318 102 0 9 chr9 110831900 110832215 -7030412 + AluSx SINE Alu 1 312 0 506 293 6 37 chr9 110832215 110832291 -7030336 - MIR SINE MIR -89 173 96 563 308 49 40 chr9 110832646 110832971 -7029656 + L2 LINE L2 2896 3223 -90 1994 92 51 34 chr9 110833051 110833344 -7029283 + AluSx SINE Alu 1 298 -14 21 0 0 0 chr9 110833423 110833444 -7029183 + AT_rich Low_complexity Low_complexity 1 21 0 454 242 169 28 chr9 110833499 110833677 -7028950 - MIR SINE MIR -57 205 3 221 154 0 0 chr9 110835014 110835053 -7027574 - MIR SINE MIR -18 244 206 1963 155 13 10 chr9 110836051 110836354 -7026273 - AluJb SINE Alu -8 304 1 1415 185 38 37 chr9 110836561 110837108 -7025519 + L1M2 LINE L1 2588 3127 -3721 2368 101 3 0 chr9 110837110 110837416 -7025211 + AluSq SINE Alu 6 312 -1 2308 102 7 0 chr9 110837962 110838265 -7024362 + AluSx SINE Alu 1 305 -7 222 308 0 0 chr9 110838441 110838506 -7024121 + MIR SINE MIR 117 181 -81 202 176 110 44 chr9 110839070 110839161 -7023466 - L2 LINE L2 -24 3248 3152 223 343 20 20 chr9 110839336 110839435 -7023192 + MIR SINE MIR 14 112 -150 328 342 106 0 chr9 110839647 110839808 -7022819 + MIR SINE MIR 85 262 0 1896 163 6 16 chr9 110839975 110840288 -7022339 - AluSx SINE Alu -2 310 1 2149 107 4 0 chr9 110840303 110840623 -7022004 - AluSx SINE Alu 0 321 1 461 299 0 8 chr9 110841367 110841501 -7021126 + MIR SINE MIR 13 145 -117 192 326 33 33 chr9 110841642 110841734 -7020893 + MIR SINE MIR 158 249 -13 2230 108 3 3 chr9 110841857 110842154 -7020473 + AluSx SINE Alu 1 297 -15 2503 51 3 3 chr9 110842155 110842448 -7020179 + AluY SINE Alu 1 293 -18 276 100 0 0 chr9 110842585 110842625 -7020002 + (T)n Simple_repeat Simple_repeat 1 40 0 1409 142 0 15 chr9 110842888 110843093 -7019534 - AluJb SINE Alu -98 214 13 1034 233 9 5 chr9 110843177 110843400 -7019227 + MLT1D LTR MaLR 273 496 -9 1669 238 57 19 chr9 110843409 110843884 -7018743 + L1ME1 LINE L1 5647 6139 -27 32 26 0 0 chr9 110843888 110843927 -7018700 + AT_rich Low_complexity Low_complexity 1 39 0 182 269 39 19 chr9 110844084 110844136 -7018491 - MIR SINE MIR -165 97 45 2323 99 3 13 chr9 110844814 110845117 -7017510 + AluSp SINE Alu 1 300 -13 487 289 13 0 chr9 110845446 110845605 -7017022 + L1M4 LINE L1 4095 4255 -1891 * 797 190 113 68 chr9 110845602 110845823 -7016804 + L1M4 LINE L1 4539 4769 -1377 2002 67 0 0 chr9 110845827 110846105 -7016522 + AluY SINE Alu 39 281 -30 2304 125 0 0 chr9 110846110 110846527 -7016100 + AluSq SINE Alu 1 417 0 2539 59 3 0 chr9 110846909 110847212 -7015415 - AluSp SINE Alu -9 304 1 198 300 193 0 chr9 110847710 110847850 -7014777 + MIR SINE MIR 96 262 0 228 268 155 36 chr9 110848865 110849033 -7013594 - MIR SINE MIR -55 207 20 1891 111 0 23 chr9 110850056 110850318 -7012309 + AluSq SINE Alu 43 298 -15 648 206 50 0 chr9 110850325 110850485 -7012142 - Charlie4 DNA MER1_type -1777 184 17 1348 139 0 0 chr9 110850839 110851033 -7011594 - AluSg/x SINE Alu -14 298 105 361 102 0 0 chr9 110851041 110851090 -7011537 - Alu SINE Alu -253 49 1 337 165 99 143 chr9 110851125 110851307 -7011320 + Charlie4a DNA MER1_type 234 407 -101 362 138 0 0 chr9 110851310 110851368 -7011259 + AluSp/q SINE Alu 238 295 -8 360 77 0 0 chr9 110851570 110851622 -7011005 + (TG)n Simple_repeat Simple_repeat 2 53 0 2079 119 0 53 chr9 110853284 110853602 -7009025 + AluSx SINE Alu 1 301 -11 429 252 0 38 chr9 110853641 110853720 -7008907 - L1ME4a LINE L1 -1 6120 6048 2293 105 0 7 chr9 110853720 110854025 -7008602 + AluSq SINE Alu 1 303 -10 429 252 0 38 chr9 110854025 110854104 -7008523 - L1ME4a LINE L1 -73 6048 5968 460 251 176 64 chr9 110854346 110854585 -7008042 - L1ME4a LINE L1 -466 5655 5368 2142 114 10 0 chr9 110854585 110854882 -7007745 - AluSx SINE Alu -12 300 1 460 251 176 64 chr9 110854882 110854972 -7007655 - L1ME4a LINE L1 -753 5368 5289 2185 133 0 0 chr9 110855571 110855872 -7006755 - AluSx SINE Alu -11 301 1 304 21 62 0 chr9 110855962 110856010 -7006617 + (TTTG)n Simple_repeat Simple_repeat 1 51 0 1848 42 0 5 chr9 110856013 110856226 -7006401 - AluY SINE Alu -36 275 64 22 35 0 0 chr9 110856627 110856656 -7005971 + AT_rich Low_complexity Low_complexity 1 29 0 2140 113 3 41 chr9 110856826 110857144 -7005483 - AluSx SINE Alu -6 306 1 1825 136 3 61 chr9 110857244 110857574 -7005053 - AluSx SINE Alu -1 311 1 1992 106 0 0 chr9 110858231 110858486 -7004141 - AluSg SINE Alu -2 308 54 2160 111 14 0 chr9 110858491 110858780 -7003847 - AluSq SINE Alu -20 293 1 22 0 0 0 chr9 110860468 110860490 -7002137 + AT_rich Low_complexity Low_complexity 1 22 0 185 283 97 35 chr9 110860804 110860917 -7001710 - MIR SINE MIR -102 160 41 1797 175 0 3 chr9 110860972 110861147 -7001480 - AluSx SINE Alu 0 309 134 2248 111 3 3 chr9 110861147 110861453 -7001174 - AluSq SINE Alu -7 306 1 1797 175 0 3 chr9 110861453 110861587 -7001040 - AluSx SINE Alu -175 134 1 1108 163 58 54 chr9 110861725 110861965 -7000662 + AluJo SINE Alu 54 294 -18 2418 214 75 41 chr9 110861970 110862524 -7000103 + L1M4 LINE L1 2173 2706 -3440 2237 93 13 3 chr9 110862524 110862825 -6999802 + AluSq SINE Alu 1 304 -9 2418 214 75 41 chr9 110862825 110862872 -6999755 + L1M4 LINE L1 2706 2750 -3396 2441 77 0 7 chr9 110862872 110863182 -6999445 + AluSc SINE Alu 1 308 -1 2418 214 75 41 chr9 110863182 110863388 -6999239 + L1M4 LINE L1 2750 3009 -3137 305 157 71 14 chr9 110863416 110863486 -6999141 + Tigger5 DNA MER2_type 2250 2323 0 693 260 111 26 chr9 110863487 110863597 -6999030 + L1M4 LINE L1 3025 3124 -3022 2280 104 0 7 chr9 110863597 110863906 -6998721 + AluSc SINE Alu 1 307 -2 693 260 111 26 chr9 110863906 110864183 -6998444 + L1M4 LINE L1 3124 3445 -2701 2529 68 0 0 chr9 110864189 110864496 -6998131 + AluY SINE Alu 2 308 -3 270 169 92 0 chr9 110864536 110864601 -6998026 + L1M4 LINE L1 4617 4687 -1459 2379 89 13 0 chr9 110864644 110864947 -6997680 + AluSx SINE Alu 1 307 -5 687 265 137 19 chr9 110864947 110865313 -6997314 + L2 LINE L2 2353 2761 -553 2268 87 30 0 chr9 110865771 110866069 -6996558 + AluSq SINE Alu 1 307 -6 684 237 65 15 chr9 110866075 110866355 -6996272 + L2 LINE L2 2776 3067 -246 21 0 0 0 chr9 110866355 110866376 -6996251 + AT_rich Low_complexity Low_complexity 1 21 0 861 129 24 0 chr9 110866376 110866500 -6996127 - FLAM_C SINE Alu -6 127 1 921 147 13 0 chr9 110866595 110866745 -6995882 - MLT-int LTR MaLR -185 1550 1399 2171 75 0 14 chr9 110866745 110867024 -6995603 - AluSx SINE Alu -29 283 9 1999 208 68 19 chr9 110867030 110867178 -6995449 - L1ME1 LINE L1 -141 6025 5886 5157 30 2 0 chr9 110867178 110867768 -6994859 + LTR10C LTR ERV1 1 591 0 1999 208 68 19 chr9 110867768 110868091 -6994536 - L1ME1 LINE L1 -280 5886 5531 1238 238 27 42 chr9 110868135 110868214 -6994413 - L1ME1 LINE L1 -933 5213 5134 2062 153 0 0 chr9 110868214 110868515 -6994112 + AluSx SINE Alu 1 301 -11 1238 238 27 42 chr9 110868515 110868843 -6993784 - L1ME1 LINE L1 -1012 5134 4812 2196 97 3 7 chr9 110869099 110869389 -6993238 + AluSg SINE Alu 2 290 -20 2176 105 0 17 chr9 110869857 110870172 -6992455 - AluSg SINE Alu 0 310 1 666 165 0 39 chr9 110871327 110871454 -6991173 + FLAM_A SINE Alu 1 122 -11 354 236 58 63 chr9 110871474 110871648 -6990979 - L1MC4a LINE L1 -1822 5986 5814 2264 93 0 3 chr9 110871663 110871954 -6990673 + AluSg SINE Alu 1 290 -20 616 110 29 81 chr9 110872011 110872050 -6990577 - Charlie2 DNA MER1_type 0 2862 2823 1940 141 32 0 chr9 110872050 110872334 -6990293 - AluSx SINE Alu -19 293 1 616 110 29 81 chr9 110872334 110872430 -6990197 - Charlie2 DNA MER1_type -39 2823 2734 1858 166 7 13 chr9 110872606 110872913 -6989714 - AluJb SINE Alu -7 305 1 2113 150 0 3 chr9 110872919 110873232 -6989395 - AluSx SINE Alu 0 312 1 499 115 39 0 chr9 110873233 110873311 -6989316 + Charlie1 DNA MER1_type 2108 2188 -573 780 199 7 0 chr9 110873312 110873453 -6989174 + AluSq/x SINE Alu 2 143 -170 462 168 9 75 chr9 110873456 110873563 -6989064 + AluJo/FRAM SINE Alu 197 296 -16 362 197 47 134 chr9 110873566 110873620 -6989007 + Charlie1 DNA MER1_type 2220 2277 -484 2344 80 7 3 chr9 110873620 110873919 -6988708 + AluSp SINE Alu 1 300 -13 2138 128 3 3 chr9 110873924 110874230 -6988397 + AluSx SINE Alu 1 306 -6 362 197 47 134 chr9 110874230 110874296 -6988331 + Charlie1 DNA MER1_type 2281 2335 -426 599 199 40 7 chr9 110874336 110874487 -6988140 + Charlie1 DNA MER1_type 2597 2752 -9 1626 179 10 14 chr9 110874487 110874778 -6987849 + AluJo SINE Alu 1 290 -22 2079 141 0 10 chr9 110875135 110875448 -6987179 + AluSx SINE Alu 1 310 -2 1107 238 106 38 chr9 110875969 110876817 -6985810 - L2 LINE L2 -5 3308 2403 688 55 0 33 chr9 110876817 110876908 -6985719 + AluJb SINE Alu 209 296 -16 2154 121 3 0 chr9 110876987 110877284 -6985343 + AluSx SINE Alu 1 298 -14 1939 148 0 7 chr9 110877317 110877621 -6985006 + AluJb SINE Alu 1 302 0 343 60 40 0 chr9 110878149 110878199 -6984428 + (TATG)n Simple_repeat Simple_repeat 3 54 0 588 145 0 0 chr9 110878202 110878285 -6984342 - FLAM_A SINE Alu -26 116 34 25 0 0 0 chr9 110878556 110878581 -6984046 + AT_rich Low_complexity Low_complexity 1 25 0 554 261 78 55 chr9 110878659 110878676 -6983951 + Charlie2b DNA MER1_type 519 534 -2248 2337 108 0 13 chr9 110878676 110878990 -6983637 - AluSg SINE Alu 0 310 1 554 261 78 55 chr9 110878990 110879229 -6983398 + Charlie2b DNA MER1_type 534 781 -2001 * 975 253 33 18 chr9 110879204 110879477 -6983150 + Charlie2b DNA MER1_type 1105 1381 -1401 1923 149 23 3 chr9 110880008 110880309 -6982318 + AluSx SINE Alu 1 307 -5 1320 112 6 0 chr9 110880429 110880607 -6982020 - AluSg1 SINE Alu -130 179 1 1248 67 0 0 chr9 110880621 110880770 -6981857 - AluSp/q SINE Alu -9 304 156 1399 188 48 16 chr9 110881072 110881322 -6981305 - AluJb SINE Alu -54 258 1 2001 111 66 0 chr9 110881365 110881653 -6980974 - AluSx SINE Alu -5 307 1 3678 182 32 76 chr9 110883450 110883567 -6979060 - L1MB8 LINE L1 0 6178 6057 2383 86 0 10 chr9 110883567 110883871 -6978756 - AluSc SINE Alu -8 301 1 3678 182 32 76 chr9 110883871 110884306 -6978321 - L1MB8 LINE L1 -121 6057 5604 2229 99 0 45 chr9 110884306 110884482 -6978145 - AluSq SINE Alu -15 298 141 2380 74 7 0 chr9 110884482 110884778 -6977849 - AluY SINE Alu -12 299 2 2229 99 0 45 chr9 110884778 110884913 -6977714 - AluSq SINE Alu -172 141 1 3678 182 32 76 chr9 110884913 110885089 -6977538 - L1MB8 LINE L1 -574 5604 5422 667 168 109 0 chr9 110885089 110885208 -6977419 - FLAM_A SINE Alu 0 133 2 3678 182 32 76 chr9 110885208 110885443 -6977184 - L1MB8 LINE L1 -756 5422 5261 2286 99 0 3 chr9 110885443 110885737 -6976890 - AluSg1 SINE Alu -16 293 1 3678 182 32 76 chr9 110885737 110885764 -6976863 - L1MB8 LINE L1 -917 5261 5234 733 277 77 41 chr9 110886168 110886507 -6976120 - MLT1J LTR MaLR -141 370 20 2064 173 67 65 chr9 110886678 110887197 -6975430 - MLT2B1 LTR ERVL 0 520 1 435 208 30 0 chr9 110888654 110888770 -6973857 + MIR SINE MIR 35 152 -62 1844 123 108 0 chr9 110888794 110889063 -6973564 - AluSx SINE Alu -14 298 1 1144 249 63 128 chr9 110889137 110889439 -6973188 + HAL1 LINE L1 161 481 -2026 2584 53 0 0 chr9 110889439 110889741 -6972886 + AluY SINE Alu 1 302 -9 1144 249 63 128 chr9 110889741 110890259 -6972368 + HAL1 LINE L1 481 1031 -1476 2013 138 3 0 chr9 110890259 110890580 -6972047 + AluSx SINE Alu 5 326 0 1144 249 63 128 chr9 110890580 110890716 -6971911 + HAL1 LINE L1 1031 1174 -1333 1701 118 96 19 chr9 110890716 110891008 -6971619 - AluJo SINE Alu 0 312 2 1144 249 63 128 chr9 110891008 110891091 -6971536 + HAL1 LINE L1 1174 1131 -1376 461 132 53 0 chr9 110891091 110891167 -6971460 + MADE1 DNA Mariner 1 80 0 1144 249 63 128 chr9 110891167 110891234 -6971393 + HAL1 LINE L1 1130 1200 -1307 900 112 0 30 chr9 110891238 110891372 -6971255 + AluSp/q SINE Alu 173 302 -11 1240 211 99 90 chr9 110891372 110891916 -6970711 + HAL1 LINE L1 1196 1744 -763 2125 103 3 19 chr9 110891922 110892234 -6970393 + AluY SINE Alu 3 309 -2 763 196 205 22 chr9 110892234 110892463 -6970164 - L1MC/D LINE L1 -758 5586 5316 271 284 134 65 chr9 110892882 110893114 -6969513 - MIR SINE MIR 0 262 15 291 273 45 23 chr9 110894494 110894626 -6968001 - MIR SINE MIR -69 193 59 1512 94 0 10 chr9 110894791 110894992 -6967635 + AluSg/x SINE Alu 95 293 -16 625 202 52 67 chr9 110895725 110895918 -6966709 + LTR41 LTR ERVL 1 190 -583 2256 102 0 6 chr9 110896345 110896659 -6965968 + AluSx SINE Alu 1 312 0 1207 216 49 15 chr9 110896735 110897059 -6965568 - MER74B LTR ERVL -77 545 211 321 86 0 86 chr9 110897098 110897156 -6965471 - MER74B LTR ERVL -569 53 1 413 111 57 11 chr9 110897165 110897253 -6965374 + LTR50 LTR ERVL 672 780 -14 254 224 134 0 chr9 110897429 110897496 -6965131 - L1P4 LINE L1 -397 5766 5691 533 259 112 9 chr9 110897637 110897869 -6964758 - L1MCc LINE L1 -3637 3304 3049 2192 252 164 33 chr9 110897870 110898051 -6964576 - L1MCc LINE L1 -5447 976 820 206 32 32 0 chr9 110898051 110898082 -6964545 + (TG)n Simple_repeat Simple_repeat 1 32 0 2192 252 164 33 chr9 110898082 110898749 -6963878 - L1MCc LINE L1 -5603 820 17 2477 232 13 57 chr9 110898904 110899671 -6962956 - L1MC4 LINE L1 0 8042 7310 288 278 0 0 chr9 110899735 110899807 -6962820 - L1MC4a LINE L1 -574 7234 7163 1206 278 105 72 chr9 110899807 110900228 -6962399 + L1MEd LINE L1 272 678 -5441 213 39 0 0 chr9 110900228 110900254 -6962373 + (CA)n Simple_repeat Simple_repeat 2 27 0 1206 278 105 72 chr9 110900254 110900740 -6961887 + L1MEd LINE L1 678 1209 -4910 1897 288 50 26 chr9 110900743 110901156 -6961471 - MER115 DNA AcHobo 0 693 235 1226 197 62 28 chr9 110901156 110901480 -6961147 - AluJo SINE Alu 0 312 1 1897 288 50 26 chr9 110901480 110901721 -6960906 - MER115 DNA AcHobo -458 235 1 473 266 83 46 chr9 110901721 110902092 -6960535 + L1MEd LINE L1 1245 1581 -4548 1938 202 67 69 chr9 110902092 110902646 -6959981 + MLT2B3 LTR ERVL 1 553 -1 473 266 83 46 chr9 110902646 110902696 -6959931 + L1MEd LINE L1 1581 1628 -4501 203 338 28 14 chr9 110902724 110902795 -6959832 - MIR SINE MIR -88 120 49 325 257 88 59 chr9 110903445 110903581 -6959046 - MIR SINE MIR -111 151 12 2078 116 0 0 chr9 110903637 110903931 -6958696 - AluSq SINE Alu -19 294 1 3534 124 15 21 chr9 110904389 110904919 -6957708 + MER1A DNA MER1_type 1 527 0 707 114 88 0 chr9 110905095 110905209 -6957418 - AluSp SINE Alu -180 133 10 1518 99 4 17 chr9 110905215 110905447 -6957180 - AluY SINE Alu -82 229 1 846 178 20 0 chr9 110905448 110905594 -6957033 - FRAM SINE Alu -14 162 14 1658 239 96 45 chr9 110906084 110906184 -6956443 + L1ME LINE L1 234 327 -5743 1979 103 0 4 chr9 110906184 110906491 -6956136 + AluSg SINE Alu 1 306 0 1658 239 96 45 chr9 110906491 110907129 -6955498 + L1ME LINE L1 327 1011 -5059 1608 176 7 19 chr9 110907133 110907440 -6955187 + AluJb SINE Alu 6 308 -4 1374 176 15 67 chr9 110907725 110908054 -6954573 - AluJo SINE Alu 0 312 1 245 312 32 11 chr9 110908303 110908396 -6954231 - MIR SINE MIR -7 255 161 238 301 110 34 chr9 110908472 110908618 -6954009 + MIR SINE MIR 105 261 -1 492 316 104 9 chr9 110908714 110908926 -6953701 + MIR SINE MIR 31 262 0 836 103 8 0 chr9 110909528 110909645 -6952982 - FLAM_C SINE Alu -25 118 1 291 279 63 0 chr9 110909656 110909735 -6952892 - L1MC5 LINE L1 -65 7896 7813 23 33 0 0 chr9 110910346 110910376 -6952251 + AT_rich Low_complexity Low_complexity 1 30 0 799 250 70 16 chr9 110910515 110910759 -6951868 + MIR SINE MIR 2 258 -4 2385 69 0 3 chr9 110911941 110912246 -6950381 - AluSx SINE Alu -8 304 1 943 182 0 32 chr9 110912393 110912580 -6950047 + AluJb SINE Alu 120 300 -12 1989 125 3 10 chr9 110912580 110912885 -6949742 + AluSx SINE Alu 1 303 -9 2107 92 23 0 chr9 110912885 110913188 -6949439 + AluY SINE Alu 1 311 0 2283 97 0 0 chr9 110913460 110913758 -6948869 - AluSx SINE Alu -14 298 1 6762 101 32 5 chr9 110913758 110914702 -6947925 - HSMAR1 DNA Mariner -316 971 3 1449 199 3 47 chr9 110914815 110915132 -6947495 - AluJo SINE Alu -9 303 1 1879 62 0 16 chr9 110915694 110915937 -6946690 - AluSc SINE Alu -17 292 54 2172 59 3 62 chr9 110915969 110916291 -6946336 - AluY SINE Alu -8 303 1 249 159 61 159 chr9 110916841 110916887 -6945740 - L1ME4a LINE L1 -11 6110 6061 2058 91 3 10 chr9 110916887 110917185 -6945442 + AluSp SINE Alu 3 298 -15 249 159 61 159 chr9 110917185 110917270 -6945357 - L1ME4a LINE L1 -60 6061 5992 478 286 184 61 chr9 110917552 110917655 -6944972 + L2 LINE L2 2593 2682 -631 2358 78 3 0 chr9 110917655 110917962 -6944665 + AluY SINE Alu 1 308 -3 478 286 184 61 chr9 110917962 110918237 -6944390 + L2 LINE L2 2682 3026 -287 251 315 65 56 chr9 110918372 110918480 -6944147 - L2 LINE L2 0 3272 3164 1939 195 60 14 chr9 110918480 110918916 -6943711 - MLT1F LTR MaLR -82 460 5 2229 96 7 0 chr9 110919701 110919994 -6942633 + AluSg SINE Alu 1 295 -15 489 188 68 8 chr9 110920503 110920620 -6942007 - L1ME LINE L1 -439 5682 5559 330 311 88 9 chr9 110922041 110922269 -6940358 + L2 LINE L2 2923 3168 -145 2084 106 7 0 chr9 110922366 110922658 -6939969 - AluSx SINE Alu -18 294 1 253 230 175 24 chr9 110922878 110923004 -6939623 + L1MC5 LINE L1 7359 7503 -458 279 274 115 53 chr9 110923004 110923230 -6939397 + MER102a DNA MER1_type 91 330 0 210 200 25 0 chr9 110923742 110923782 -6938845 + MIR SINE MIR 149 189 -73 2010 113 10 23 chr9 110924353 110924662 -6937965 - AluSq SINE Alu -8 305 1 1860 212 14 14 chr9 110924705 110925124 -6937503 - L1ME1 LINE L1 -5 6161 5743 210 37 0 0 chr9 110925183 110925210 -6937417 + (TC)n Simple_repeat Simple_repeat 2 28 0 1780 170 0 0 chr9 110925248 110925536 -6937091 + AluJo SINE Alu 1 288 -24 220 125 42 62 chr9 110925653 110925701 -6936926 - MIR SINE MIR -21 241 195 212 295 16 0 chr9 110925705 110925766 -6936861 + L2 LINE L2 3251 3312 -1 234 0 0 0 chr9 110925961 110925987 -6936640 + (TA)n Simple_repeat Simple_repeat 1 26 0 2175 102 0 3 chr9 110925988 110926291 -6936336 - AluSx SINE Alu -10 302 1 24 0 0 0 chr9 110926295 110926319 -6936308 + AT_rich Low_complexity Low_complexity 1 24 0 316 222 0 25 chr9 110926389 110926470 -6936157 - Charlie2a DNA MER1_type -1310 1552 1474 2354 100 0 0 chr9 110926525 110926836 -6935791 - AluSx SINE Alu -1 311 1 255 170 0 0 chr9 110926853 110926900 -6935727 + (TAGG)n Simple_repeat Simple_repeat 2 48 0 331 303 220 0 chr9 110926958 110927067 -6935560 + L2 LINE L2 2172 2304 -1010 1744 273 41 19 chr9 110927124 110927656 -6934971 + L1MEc LINE L1 62 605 -5791 333 0 0 0 chr9 110927674 110927711 -6934916 + (GA)n Simple_repeat Simple_repeat 1 37 0 252 86 0 0 chr9 110927710 110927745 -6934882 + (TG)n Simple_repeat Simple_repeat 1 35 0 * 944 237 100 64 chr9 110927745 110928146 -6934481 - MLT2B1 LTR ERVL -52 412 1 1344 243 163 32 chr9 110928146 110928506 -6934121 + L1MEc LINE L1 600 912 -5484 2123 119 0 0 chr9 110928506 110928801 -6933826 + AluSx SINE Alu 1 295 -17 1344 243 163 32 chr9 110928801 110929090 -6933537 + L1MEc LINE L1 912 1334 -5062 1465 77 0 14 chr9 110929208 110929416 -6933211 - AluSg SINE Alu -105 205 1 631 286 57 43 chr9 110932081 110932501 -6930126 + HAL1 LINE L1 748 1173 -1334 239 160 0 40 chr9 110932528 110932578 -6930049 + Alu SINE Alu 1 48 -253 288 284 55 8 chr9 110932986 110933113 -6929514 + L1MC4 LINE L1 7693 7825 -217 302 329 48 57 chr9 110933436 110933646 -6928981 - MIR SINE MIR -37 225 18 279 283 100 39 chr9 110933655 110933759 -6928868 - MER112 DNA MER1_type -4 256 135 2187 110 7 7 chr9 110933759 110934068 -6928559 + AluSx SINE Alu 1 309 -3 279 283 100 39 chr9 110934068 110934143 -6928484 - MER112 DNA MER1_type -125 135 66 258 241 101 25 chr9 110934172 110934251 -6928376 - MER112 DNA MER1_type -175 85 1 411 294 38 0 chr9 110935430 110935616 -6927011 - L1MC4a LINE L1 -428 5756 5699 825 231 63 29 chr9 110935617 110935855 -6926772 + MER112 DNA MER1_type 3 248 -12 305 312 32 51 chr9 110935930 110936087 -6926540 - L1MC4a LINE L1 -537 5584 5431 315 230 111 56 chr9 110936173 110936336 -6926291 - L1MC4a LINE L1 -1300 4846 4675 2156 97 27 0 chr9 110938361 110938661 -6923966 - AluSg SINE Alu -1 309 2 576 322 108 31 chr9 110940874 110941234 -6921393 - L2 LINE L2 -1 3312 2925 2074 104 17 13 chr9 110942928 110943227 -6919400 - AluSx SINE Alu -12 300 1 1985 132 7 3 chr9 110944148 110944451 -6918176 + AluJb SINE Alu 2 305 -7 663 273 70 9 chr9 110944490 110944591 -6918036 - MIR SINE MIR -2 260 167 1252 200 4 0 chr9 110944591 110944826 -6917801 + MER46A DNA MER2_type 1 236 0 663 273 70 9 chr9 110944826 110944951 -6917676 - MIR SINE MIR -95 167 20 679 155 16 47 chr9 110945527 110945656 -6916971 - FLAM_A SINE Alu -8 125 1 463 308 122 18 chr9 110946023 110946302 -6916325 - L1MC/D LINE L1 -2016 5792 5485 2371 77 3 6 chr9 110946621 110946938 -6915689 - AluY SINE Alu 0 317 2 1783 125 18 0 chr9 110947193 110947465 -6915162 - AluSq SINE Alu 0 313 37 2402 74 0 0 chr9 110947567 110947864 -6914763 + AluY SINE Alu 1 297 -14 409 282 169 0 chr9 110948069 110948211 -6914416 - MIR SINE MIR -95 167 2 1990 130 40 0 chr9 110948494 110948794 -6913833 - AluSx SINE Alu 0 312 1 572 221 61 31 chr9 110953169 110953332 -6909295 - MIR SINE MIR -22 240 73 2276 109 0 3 chr9 110953811 110954124 -6908503 - AluSx SINE Alu 0 312 1 648 254 90 28 chr9 110954132 110954455 -6908172 - L1MC5 LINE L1 -370 7591 7249 200 222 0 0 chr9 110954472 110954508 -6908119 + polypyrimidine Low_complexity Low_complexity 1 36 0 2199 97 7 0 chr9 110954508 110954807 -6907820 - AluSq SINE Alu -12 301 1 1316 215 39 100 chr9 110954862 110955087 -6907540 - L1MC5 LINE L1 -733 7228 6991 1971 127 0 41 chr9 110955087 110955402 -6907225 - AluSq SINE Alu -11 302 1 2052 73 11 7 chr9 110955411 110955685 -6906942 - AluY SINE Alu -3 308 34 1316 215 39 100 chr9 110955685 110956017 -6906610 - L1MC5 LINE L1 -978 6983 6696 208 312 242 38 chr9 110956041 110956198 -6906429 - MIR3 SINE MIR -3 205 17 2101 120 0 23 chr9 110956321 110956490 -6906137 - AluSx SINE Alu -11 301 141 2395 56 0 23 chr9 110956490 110956794 -6905833 - AluY SINE Alu -14 297 1 2101 120 0 23 chr9 110956794 110956932 -6905695 - AluSx SINE Alu -171 141 1 2383 73 3 0 chr9 110957556 110957858 -6904769 - AluSp SINE Alu -10 303 1 338 281 113 41 chr9 110957969 110958357 -6904270 - L1MC5 LINE L1 -357 5813 5473 248 189 0 38 chr9 110959887 110959940 -6902687 - MIR SINE MIR 0 262 212 2429 114 34 0 chr9 110960012 110960362 -6902265 - THE1B LTR MaLR 0 364 3 200 321 74 0 chr9 110961250 110961331 -6901296 - L2 LINE L2 -19 3294 3208 237 33 0 0 chr9 110961482 110961512 -6901115 + (CA)n Simple_repeat Simple_repeat 1 30 0 201 129 0 0 chr9 110961578 110961609 -6901018 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 536 292 42 58 chr9 110962155 110962205 -6900422 + MIR SINE MIR 21 70 -192 2192 95 3 10 chr9 110962205 110962501 -6900126 + AluSc SINE Alu 1 294 -15 536 292 42 58 chr9 110962501 110962690 -6899937 + MIR SINE MIR 70 256 -6 2082 100 14 3 chr9 110962699 110962990 -6899637 - AluSx SINE Alu -18 294 1 306 278 90 23 chr9 110963008 110963141 -6899486 + MIR SINE MIR 73 214 -48 222 163 41 41 chr9 110964672 110964721 -6897906 - MIR SINE MIR -75 133 85 291 270 50 20 chr9 110964767 110964867 -6897760 - MIR3 SINE MIR -28 180 78 224 213 0 21 chr9 110964970 110965017 -6897610 - MIR SINE MIR -138 70 25 30 27 0 0 chr9 110966163 110966200 -6896427 + GC_rich Low_complexity Low_complexity 1 37 0 32 91 0 0 chr9 110966664 110966752 -6895875 + GC_rich Low_complexity Low_complexity 1 88 0 21 36 0 0 chr9 110966776 110966804 -6895823 + GC_rich Low_complexity Low_complexity 1 28 0 235 286 33 33 chr9 110967184 110967275 -6895352 + MIR SINE MIR 72 145 -63 266 256 154 34 chr9 110967416 110967533 -6895094 - MIR SINE MIR -101 161 31 268 275 89 7 chr9 110968030 110968152 -6894475 - MIR SINE MIR -81 127 18 219 36 0 0 chr9 110968425 110968453 -6894174 + (CA)n Simple_repeat Simple_repeat 2 29 0 432 243 7 73 chr9 110969185 110969321 -6893306 + MIR SINE MIR 65 191 -71 273 244 0 35 chr9 110969567 110969653 -6892974 - MIR SINE MIR -69 193 111 239 111 167 0 chr9 110970268 110970322 -6892305 - L3b LINE CR1 -197 1386 1324 217 297 126 27 chr9 110970314 110970425 -6892202 - L2 LINE L2 -19 3253 3132 * 256 259 25 37 chr9 110971914 110971995 -6890632 - MIR3 SINE MIR -115 93 14 376 201 15 116 chr9 110972733 110972932 -6889695 - L2 LINE L2 -176 3096 2918 362 226 116 65 chr9 110973239 110973394 -6889233 - MER104 DNA Tc2 -17 163 1 281 261 14 0 chr9 110973466 110973535 -6889092 - MIR SINE MIR -7 255 186 434 272 8 24 chr9 110973620 110973745 -6888882 + MIR SINE MIR 26 148 -60 1839 112 7 7 chr9 110973892 110974168 -6888459 - AluY SINE Alu -2 309 34 775 201 52 106 chr9 110974171 110974500 -6888127 - L1MC5 LINE L1 -955 7006 6696 208 312 242 38 chr9 110974524 110974681 -6887946 - MIR3 SINE MIR -3 205 17 2101 120 0 23 chr9 110974804 110974973 -6887654 - AluSx SINE Alu -11 301 141 2395 56 0 23 chr9 110974973 110975277 -6887350 - AluY SINE Alu -14 297 1 2101 120 0 23 chr9 110975277 110975415 -6887212 - AluSx SINE Alu -171 141 1 2383 73 3 0 chr9 110976039 110976341 -6886286 - AluSp SINE Alu -10 303 1 311 285 113 41 chr9 110976452 110976840 -6885787 - L1MC5 LINE L1 -357 5813 5473 248 189 0 38 chr9 110978370 110978423 -6884204 - MIR SINE MIR 0 262 212 2429 114 34 0 chr9 110978495 110978845 -6883782 - THE1B LTR MaLR 0 364 3 2223 95 0 3 chr9 110979703 110979998 -6882629 - AluSc SINE Alu -15 294 1 541 110 0 0 chr9 110980059 110980132 -6882495 + Alu SINE Alu 1 73 -236 2248 92 10 0 chr9 110980380 110980675 -6881952 + AluSq SINE Alu 1 298 -15 508 160 160 9 chr9 110980975 110981108 -6881519 - AluSg/x SINE Alu 0 310 162 217 302 16 0 chr9 110985026 110985158 -6877469 + C-rich Low_complexity Low_complexity 1 134 0 1743 124 58 0 chr9 110987409 110987683 -6874944 + AluJo SINE Alu 1 290 -22 2240 89 0 7 chr9 110987683 110987985 -6874642 - AluSc SINE Alu -9 300 1 2297 83 3 0 chr9 110987991 110988292 -6874335 - AluY SINE Alu -9 302 1 382 263 0 21 chr9 110988311 110988406 -6874221 - MIR SINE MIR -95 167 75 371 344 61 0 chr9 110992727 110992890 -6869737 - MIR SINE MIR -34 228 56 350 330 16 23 chr9 110992937 110993102 -6869525 - MIR SINE MIR -55 153 3 213 359 0 0 chr9 110995119 110995183 -6867444 + (CGTG)n Simple_repeat Simple_repeat 4 67 0 451 270 17 35 chr9 110997155 110997448 -6865179 + C-rich Low_complexity Low_complexity 1 287 0 1744 134 20 20 chr9 110998087 110998379 -6864248 + AluJo SINE Alu 1 292 -20 182 261 0 0 chr9 110998765 110998811 -6863816 + L2 LINE L2 2425 2470 -844 193 195 49 0 chr9 111003019 111003060 -6859567 + MIR SINE MIR 111 153 -109 400 335 137 10 chr9 111004084 111004391 -6858236 + L2 LINE L2 2924 3269 -3 615 262 24 0 chr9 111005200 111005364 -6857263 - MIR SINE MIR -80 182 15 2406 81 0 3 chr9 111005917 111006226 -6856401 + AluSg SINE Alu 3 310 0 373 324 72 43 chr9 111006227 111006531 -6856096 + L1MDa LINE L1 2393 5720 -820 286 348 95 13 chr9 111006856 111007014 -6855613 + MIR SINE MIR 44 214 -48 634 215 38 13 chr9 111007734 111007892 -6854735 + L1MB7 LINE L1 6006 6167 -17 5290 142 31 32 chr9 111008236 111009367 -6853260 + pTR5 LTR ERV1 743 2030 -408 268 170 0 0 chr9 111009370 111009423 -6853204 + LTR30 LTR ERV1 552 604 -118 1355 134 5 5 chr9 111009433 111009657 -6852970 + pTR5 LTR ERV1 171 394 -2044 1520 130 168 0 chr9 111010452 111010714 -6851913 + AluJo SINE Alu 1 306 -6 2193 92 7 0 chr9 111010722 111011014 -6851613 + AluSx SINE Alu 1 294 -18 21 0 0 0 chr9 111011590 111011611 -6851016 + GC_rich Low_complexity Low_complexity 1 21 0 318 317 172 11 chr9 111012251 111012431 -6850196 + MIR SINE MIR 48 256 -6 192 318 129 37 chr9 111012551 111012768 -6849859 - L2 LINE L2 -6 3266 3030 2304 86 3 0 chr9 111013718 111014019 -6848608 + AluSq SINE Alu 1 302 -11 2099 102 10 7 chr9 111014232 111014526 -6848101 - AluSg1 SINE Alu -14 295 1 303 268 31 55 chr9 111014528 111014655 -6847972 + MER112 DNA MER1_type 132 255 -5 2269 104 0 0 chr9 111015115 111015414 -6847213 + AluSx SINE Alu 3 301 -11 220 319 69 0 chr9 111016045 111016117 -6846510 - MIR SINE MIR -79 183 107 344 287 85 16 chr9 111016391 111016520 -6846107 + MIR SINE MIR 88 225 -37 307 279 58 10 chr9 111017063 111017167 -6845460 + MIR SINE MIR 32 140 -122 245 269 148 9 chr9 111017254 111017362 -6845265 + MARNA DNA Mariner 180 302 -284 227 273 0 45 chr9 111018728 111018816 -6843811 - MIR SINE MIR -111 151 68 356 208 0 6 chr9 111020722 111020814 -6841813 - MIR SINE MIR -62 146 59 192 318 37 28 chr9 111021144 111021251 -6841376 + L2 LINE L2 2944 3051 -221 218 244 148 52 chr9 111021286 111021401 -6841226 + L2 LINE L2 3146 3271 -1 302 265 51 20 chr9 111022296 111022394 -6840233 + MIR SINE MIR 43 143 -119 207 297 25 68 chr9 111023456 111023574 -6839053 - MIR SINE MIR -46 216 104 317 326 52 22 chr9 111023706 111023841 -6838786 + MIR SINE MIR 14 152 -110 212 290 32 43 chr9 111024744 111024837 -6837790 + MIR SINE MIR 61 152 -110 2209 89 3 16 chr9 111024837 111025152 -6837475 + AluSx SINE Alu 1 311 -1 1484 178 18 28 chr9 111025279 111025565 -6837062 + AluJo SINE Alu 25 307 -5 295 324 19 0 chr9 111025748 111025856 -6836771 - MIR SINE MIR -65 143 34 186 206 0 164 chr9 111025948 111025973 -6836654 + MER5A DNA MER1_type 111 138 -51 2147 87 31 0 chr9 111025973 111026259 -6836368 - AluSx SINE Alu -17 295 1 186 206 0 164 chr9 111026259 111026306 -6836321 + MER5A DNA MER1_type 138 171 -18 240 364 64 0 chr9 111027082 111027192 -6835435 + MIR3 SINE MIR 60 176 -32 253 288 82 0 chr9 111027462 111027535 -6835092 + MIR SINE MIR 72 150 -58 373 304 103 3 chr9 111027632 111027803 -6834824 + MIR SINE MIR 32 218 -44 275 282 18 18 chr9 111028467 111028630 -6833997 + (CAGAGA)n Simple_repeat Simple_repeat 6 168 0 * 355 339 0 6 chr9 111028597 111028771 -6833856 + G-rich Low_complexity Low_complexity 4 176 0 432 282 25 18 chr9 111028967 111029130 -6833497 + MIR SINE MIR 2 165 -97 2083 114 3 3 chr9 111029528 111029835 -6832792 + AluSc SINE Alu 1 307 -2 434 272 8 24 chr9 111029982 111030107 -6832520 - MIR SINE MIR -60 148 26 281 261 14 0 chr9 111030192 111030261 -6832366 + MIR SINE MIR 186 255 -7 362 226 116 65 chr9 111030333 111030488 -6832139 + MER104 DNA Tc2 1 163 -17 376 201 15 116 chr9 111030795 111030994 -6831633 + L2 LINE L2 2918 3096 -176 338 258 134 5 chr9 111031196 111031382 -6831245 + L1M4 LINE L1 2300 2509 -3637 940 294 119 16 chr9 111032264 111032768 -6829859 - L1MEd LINE L1 -5290 829 274 1704 241 86 32 chr9 111032990 111033092 -6829535 - L1ME2 LINE L1 0 6164 6069 1697 154 34 20 chr9 111033092 111033390 -6829237 + AluJo SINE Alu 1 302 -10 2062 101 10 20 chr9 111033391 111033689 -6828938 + AluSg SINE Alu 1 295 -15 1704 241 86 32 chr9 111033689 111034203 -6828424 - L1ME2 LINE L1 -94 6070 5513 251 127 0 18 chr9 111034277 111034332 -6828295 + (TTCA)n Simple_repeat Simple_repeat 2 55 0 226 56 28 0 chr9 111035239 111035275 -6827352 - L2 LINE L2 -5 3308 3272 1338 298 85 45 chr9 111035369 111035617 -6827010 - L2 LINE L2 -274 2998 2761 1984 119 0 0 chr9 111035617 111035894 -6826733 + AluSx SINE Alu 24 300 -12 1338 298 85 45 chr9 111035894 111036399 -6826228 - L2 LINE L2 -511 2761 2222 253 160 20 140 chr9 111036943 111037043 -6825584 + MLT1H LTR MaLR 462 549 0 345 215 0 0 chr9 111037273 111037352 -6825275 - L1ME4a LINE L1 -79 6042 5964 1746 114 56 36 chr9 111037365 111037671 -6824956 - AluJo SINE Alu 0 312 1 647 240 79 35 chr9 111037960 111038214 -6824413 + LTR16C LTR ERVL 189 453 -38 1649 147 4 8 chr9 111038474 111038726 -6823901 + AluJo SINE Alu 1 251 -61 195 42 0 0 chr9 111038726 111038750 -6823877 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 1581 147 100 18 chr9 111038762 111039041 -6823586 + AluJo SINE Alu 1 302 -10 320 336 146 0 chr9 111039105 111039242 -6823385 - MIR SINE MIR -1 261 105 411 335 43 0 chr9 111039320 111039481 -6823146 - L1ME LINE L1 -359 5762 5595 180 97 0 0 chr9 111039727 111039758 -6822869 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 1014 201 201 3 chr9 111040066 111040354 -6822273 - MLT1F1 LTR MaLR 0 567 223 23 0 0 29 chr9 111040686 111040705 -6821922 + AT_rich Low_complexity Low_complexity 1 20 -13 2079 115 3 0 chr9 111040705 111040992 -6821635 - AluSx SINE Alu -24 288 1 23 0 0 29 chr9 111040992 111041006 -6821621 + AT_rich Low_complexity Low_complexity 20 33 0 386 19 0 19 chr9 111041006 111041059 -6821568 - MER4E LTR ERV1 -62 704 653 545 246 79 38 chr9 111041178 111041365 -6821262 - MIR SINE MIR -63 145 4 830 158 18 12 chr9 111041703 111041868 -6820759 + MER2 DNA MER2_type 1 166 -179 228 236 0 0 chr9 111042255 111042310 -6820317 + MLT1I LTR MaLR 72 126 -283 2258 94 0 0 chr9 111042357 111042656 -6819971 + AluY SINE Alu 1 299 -12 279 330 25 17 chr9 111042815 111042933 -6819694 - MIR SINE MIR -65 143 25 485 134 5 80 chr9 111044382 111044991 -6817636 + (TG)n Simple_repeat Simple_repeat 1 563 0 299 126 0 106 chr9 111045786 111045984 -6816643 + (TCTCTG)n Simple_repeat Simple_repeat 2 178 0 628 76 0 91 chr9 111046000 111046198 -6816429 + (TCTCTG)n Simple_repeat Simple_repeat 1 180 0 228 348 11 0 chr9 111046608 111046697 -6815930 + L3 LINE CR1 1266 1355 -222 321 302 23 41 chr9 111047081 111047253 -6815374 + L2 LINE L2 2846 3014 -258 201 176 0 0 chr9 111047902 111047936 -6814691 + A-rich Low_complexity Low_complexity 1 34 0 1197 131 0 3 chr9 111047964 111048260 -6814367 + (TGG)n Simple_repeat Simple_repeat 1 296 0 552 308 30 51 chr9 111048268 111048502 -6814125 - MIR SINE MIR 0 262 34 288 318 55 21 chr9 111048689 111048861 -6813766 - MIR3 SINE MIR -62 146 14 337 311 11 0 chr9 111050059 111050149 -6812478 + MIR3 SINE MIR 116 206 -2 408 213 22 60 chr9 111051415 111051598 -6811029 + G-rich Low_complexity Low_complexity 5 180 0 2782 178 6 8 chr9 111051756 111052291 -6810336 - L1PA15 LINE L1 -110 6055 5522 2182 91 3 60 chr9 111052639 111052970 -6809657 - AluSx SINE Alu 0 312 1 1365 172 55 0 chr9 111052972 111053228 -6809399 + Tigger3(Golem) DNA MER2_type 2768 3037 0 388 205 36 12 chr9 111053231 111053314 -6809313 + L1MC4 LINE L1 6610 6694 -1348 2014 129 6 6 chr9 111053357 111053668 -6808959 + AluSx SINE Alu 1 311 -1 1513 208 43 17 chr9 111053668 111054025 -6808602 - MLT2D LTR ERVL -45 475 1 537 353 14 0 chr9 111054061 111054268 -6808359 + ERVL LTR ERVL 2993 3202 -2562 467 382 39 10 chr9 111054313 111054797 -6807830 + ERVL LTR ERVL 3243 3740 -1914 2053 91 3 18 chr9 111055355 111055664 -6806963 + AluSp SINE Alu 1 305 0 224 343 0 0 chr9 111056064 111056131 -6806496 + MIR SINE MIR 195 261 -1 2080 158 0 0 chr9 111056210 111056521 -6806106 + AluJb SINE Alu 1 311 -1 300 354 62 7 chr9 111056541 111056685 -6805942 + HAL1 LINE L1 1141 1292 -1215 288 296 177 60 chr9 111056819 111057153 -6805474 - L2 LINE L2 -96 3176 2804 620 167 35 11 chr9 111058495 111058669 -6803958 + CT-rich Low_complexity Low_complexity 3 180 0 202 173 77 0 chr9 111058692 111058744 -6803883 + (TCTCTG)n Simple_repeat Simple_repeat 1 56 0 192 97 0 0 chr9 111058800 111058831 -6803796 + (TCTCTG)n Simple_repeat Simple_repeat 2 32 0 1671 157 39 42 chr9 111058907 111059219 -6803408 + AluJb SINE Alu 1 311 -1 2136 105 0 14 chr9 111059590 111059885 -6802742 - AluSq SINE Alu -22 291 1 1937 126 7 7 chr9 111059887 111060181 -6802446 - AluSx SINE Alu -18 294 1 1738 180 74 32 chr9 111060185 111060411 -6802216 - L1MB5 LINE L1 -36 6138 5923 1696 87 0 55 chr9 111060411 111060664 -6801963 - AluSq SINE Alu -8 305 67 2236 81 17 0 chr9 111060664 111060959 -6801668 - AluY SINE Alu -9 302 1 1738 180 74 32 chr9 111060959 111061164 -6801463 - L1MB5 LINE L1 -250 5924 5688 12374 114 25 59 chr9 111061164 111061282 -6801345 - Tigger1 DNA MER2_type 0 2418 2297 2231 98 7 0 chr9 111061282 111061578 -6801049 + AluSg SINE Alu 1 298 -12 12374 114 25 59 chr9 111061578 111062206 -6800421 - Tigger1 DNA MER2_type -121 2297 1649 2249 99 3 0 chr9 111062206 111062508 -6800119 - AluSp SINE Alu -8 305 3 12374 114 25 59 chr9 111062508 111062554 -6800073 - Tigger1 DNA MER2_type -769 1649 1603 1960 139 7 7 chr9 111062554 111062864 -6799763 - AluSx SINE Alu -2 310 1 12374 114 25 59 chr9 111062864 111063351 -6799276 - Tigger1 DNA MER2_type -815 1603 1101 2243 73 3 22 chr9 111063351 111063668 -6798959 - AluY SINE Alu 0 311 1 12374 114 25 59 chr9 111063668 111064408 -6798219 - Tigger1 DNA MER2_type -1317 1101 484 2343 81 3 0 chr9 111064408 111064706 -6797921 - AluSp SINE Alu -14 299 1 12374 114 25 59 chr9 111064706 111065005 -6797622 - Tigger1 DNA MER2_type -1934 484 176 1061 244 0 41 chr9 111065016 111065282 -6797345 + AluJo SINE Alu 19 273 -39 215 30 0 30 chr9 111065290 111065323 -6797304 + (TAAAA)n Simple_repeat Simple_repeat 4 35 0 844 121 0 14 chr9 111065328 111065469 -6797158 - Tigger1 DNA MER2_type -2232 186 48 386 208 10 10 chr9 111065471 111065567 -6797060 - L1MB5 LINE L1 -482 5702 5607 2091 104 0 4 chr9 111065576 111065856 -6796771 - AluSx SINE Alu -33 279 1 1696 138 102 56 chr9 111065856 111066269 -6796358 + MER31A LTR ERV1 54 485 0 269 164 0 0 chr9 111066271 111066326 -6796301 + MER58 DNA MER1_type 64 118 -97 314 354 194 19 chr9 111067729 111068203 -6794424 + L2 LINE L2 2233 2789 -525 188 328 0 0 chr9 111068860 111068921 -6793706 - MIR3 SINE MIR -49 159 99 204 125 0 0 chr9 111070596 111070628 -6791999 + (ATGGTG)n Simple_repeat Simple_repeat 2 33 0 852 178 0 0 chr9 111070638 111070818 -6791809 + (TGG)n Simple_repeat Simple_repeat 1 180 0 1673 190 0 7 chr9 111071061 111071361 -6791266 - AluSx SINE Alu -13 299 2 639 226 74 11 chr9 111071371 111071561 -6791066 + ORSL DNA AcHobo 74 275 0 592 363 129 32 chr9 111071670 111071889 -6790738 - L1M4 LINE L1 -1564 4582 4386 217 0 29 29 chr9 111071889 111071923 -6790704 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1960 129 7 0 chr9 111071928 111072207 -6790420 - AluSx SINE Alu -31 281 1 592 363 129 32 chr9 111072207 111072422 -6790205 - L1M4 LINE L1 -1763 4383 4099 2252 113 6 0 chr9 111072581 111072892 -6789735 - AluSq SINE Alu 0 313 1 2057 123 3 3 chr9 111072940 111073242 -6789385 - AluJb SINE Alu -10 302 1 200 154 77 0 chr9 111073339 111073378 -6789249 - L2 LINE L2 -260 3053 3012 267 314 25 34 chr9 111073596 111073714 -6788913 - MIR SINE MIR -38 224 108 21 0 0 0 chr9 111073822 111073843 -6788784 + GC_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 111074000 111074021 -6788606 + GC_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 111074152 111074173 -6788454 + GC_rich Low_complexity Low_complexity 1 21 0 1842 147 3 28 chr9 111074478 111074615 -6788012 + AluJo SINE Alu 1 140 -172 2379 68 7 0 chr9 111074615 111074922 -6787705 + AluSq SINE Alu 1 309 -4 1842 147 3 28 chr9 111074922 111075104 -6787523 + AluJo SINE Alu 140 312 0 870 256 93 7 chr9 111075732 111076033 -6786594 + MER46C DNA MER2_type 12 338 0 335 178 55 9 chr9 111076036 111076123 -6786504 - MIR SINE MIR -63 145 59 252 342 111 0 chr9 111076646 111076763 -6785864 - MIR SINE MIR -14 248 119 375 23 0 0 chr9 111076792 111076836 -6785791 + (CA)n Simple_repeat Simple_repeat 2 45 0 272 270 194 0 chr9 111076989 111077147 -6785480 + MIR3 SINE MIR 3 192 -70 270 284 14 14 chr9 111077876 111077950 -6784677 - MIR SINE MIR -122 140 67 188 333 208 14 chr9 111078268 111078475 -6784152 - L2 LINE L2 -65 3207 2961 193 389 22 14 chr9 111078949 111079088 -6783539 + L2 LINE L2 2867 3006 -266 274 274 80 95 chr9 111079149 111079412 -6783215 + L2 LINE L2 3014 3272 0 1723 129 28 39 chr9 111079447 111079733 -6782894 + AluJo SINE Alu 14 296 -16 370 288 103 70 chr9 111079738 111079981 -6782646 - MIR SINE MIR -18 244 10 180 158 0 0 chr9 111080073 111080111 -6782516 + (CCCTG)n Simple_repeat Simple_repeat 3 40 0 2135 110 0 7 chr9 111080391 111080699 -6781928 - AluSx SINE Alu -6 306 1 2464 149 77 18 chr9 111080699 111081155 -6781472 + L1MB3 LINE L1 5700 6182 -1 354 338 131 9 chr9 111081186 111081514 -6781113 + L1ME4a LINE L1 5567 5934 -187 2073 90 23 3 chr9 111082185 111082485 -6780142 + AluSx SINE Alu 1 306 -6 2258 112 0 0 chr9 111082485 111082797 -6779830 + AluSx SINE Alu 1 312 0 2118 100 10 3 chr9 111082875 111083175 -6779452 - AluSx SINE Alu -10 302 1 185 309 31 41 chr9 111083354 111083451 -6779176 + L2 LINE L2 2913 3008 -264 2036 118 4 0 chr9 111083723 111084026 -6778601 + AluSx SINE Alu 3 306 0 280 333 0 0 chr9 111084080 111084152 -6778475 + L2 LINE L2 3201 3272 0 282 270 32 2 chr9 111084290 111084438 -6778189 - MIR SINE MIR -1 261 84 459 104 0 13 chr9 111085618 111085695 -6776932 - L1M3 LINE L1 -517 5666 5591 954 143 25 5 chr9 111086017 111086204 -6776423 - L1ME LINE L1 -533 5631 5447 2774 147 96 7 chr9 111086232 111086956 -6775671 - MER21A LTR ERV1 -6 925 27 261 0 0 0 chr9 111086956 111086985 -6775642 + (CA)n Simple_repeat Simple_repeat 2 30 0 889 120 0 30 chr9 111086991 111087124 -6775503 - FLAM_C SINE Alu -14 129 1 3680 186 24 26 chr9 111087172 111087293 -6775334 - L1MB8 LINE L1 -5 6173 6053 225 0 0 0 chr9 111087293 111087318 -6775309 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1733 113 17 73 chr9 111087318 111087618 -6775009 - AluJo SINE Alu -29 283 1 3680 186 24 26 chr9 111087618 111088346 -6774281 - L1MB8 LINE L1 -123 6055 5325 1427 163 21 4 chr9 111088347 111088586 -6774041 - AluJo SINE Alu -11 301 59 1214 157 48 26 chr9 111088592 111088891 -6773736 - L1MB8 LINE L1 -813 5333 5025 2261 88 7 0 chr9 111088891 111089186 -6773441 - AluSx SINE Alu -15 297 1 1214 157 48 26 chr9 111089186 111089199 -6773428 - L1MB8 LINE L1 -1121 5025 5014 330 298 63 84 chr9 111089439 111089771 -6772856 - L2 LINE L2 0 3272 2948 298 289 92 28 chr9 111089968 111090110 -6772517 - HAL1 LINE L1 -182 2325 2175 191 317 183 21 chr9 111090410 111090596 -6772031 - L2 LINE L2 -1416 1898 1683 375 342 125 0 chr9 111090657 111090809 -6771818 + L3 LINE CR1 1365 1535 -42 1994 120 10 16 chr9 111091443 111091752 -6770875 - AluSx SINE Alu -5 307 1 331 389 29 0 chr9 111091924 111092063 -6770564 - MIR3 SINE MIR -46 162 20 468 169 80 164 chr9 111092223 111092436 -6770191 + MER3 DNA MER1_type 10 204 -5 1571 152 52 37 chr9 111092735 111093063 -6769564 + MER1B DNA MER1_type 5 337 0 927 231 22 34 chr9 111093277 111093545 -6769082 - MER77 LTR ERV1 -1 604 340 814 153 0 21 chr9 111093559 111093703 -6768924 - FLAM_C SINE Alu -2 141 1 945 215 93 20 chr9 111093703 111093950 -6768677 - MER77 LTR ERV1 -287 318 54 2136 112 10 0 chr9 111094684 111094980 -6767647 - AluSx SINE Alu -13 299 1 686 253 54 0 chr9 111095223 111095389 -6767238 + MIR SINE MIR 8 182 -80 365 195 49 0 chr9 111095563 111095645 -6766982 + MER5A DNA MER1_type 24 109 -80 364 275 49 28 chr9 111096085 111096227 -6766400 - L2 LINE L2 -2 3270 3126 218 370 12 0 chr9 111096487 111096568 -6766059 - MIR SINE MIR -79 183 102 260 208 0 13 chr9 111097170 111097247 -6765380 + CT-rich Low_complexity Low_complexity 3 78 0 903 134 0 0 chr9 111097249 111097428 -6765199 + (TC)n Simple_repeat Simple_repeat 2 180 0 2116 87 4 0 chr9 111097428 111097704 -6764923 - AluSp SINE Alu -32 281 5 191 328 164 10 chr9 111098299 111098494 -6764133 - L2 LINE L2 -534 2780 2556 195 256 299 8 chr9 111099295 111099412 -6763215 + MIR SINE MIR 36 186 -22 2563 99 57 52 chr9 111099639 111099680 -6762947 - MSTA LTR MaLR -1 427 388 2164 99 3 0 chr9 111099680 111099990 -6762637 - AluSp SINE Alu 0 311 1 2563 99 57 52 chr9 111099990 111100371 -6762256 - MSTA LTR MaLR -40 388 2 257 221 130 26 chr9 111100614 111100691 -6761936 + MIR SINE MIR 71 155 -107 185 186 47 0 chr9 111101684 111101727 -6760900 - MER5A DNA MER1_type -133 56 12 1318 171 53 11 chr9 111102253 111102516 -6760111 - AluJo SINE Alu -21 291 18 296 298 21 78 chr9 111102814 111103056 -6759571 + L2 LINE L2 2948 3175 -97 365 226 28 0 chr9 111103325 111103431 -6759196 - MER94 DNA DNA -11 123 15 1071 138 0 0 chr9 111104753 111104912 -6757715 - AluSg/x SINE Alu -13 296 138 1904 154 7 3 chr9 111104922 111105214 -6757413 - AluSx SINE Alu -19 293 1 257 295 44 105 chr9 111105380 111105675 -6756952 + L2 LINE L2 2910 3186 -86 308 234 19 19 chr9 111105680 111105821 -6756806 + (TGGA)n Simple_repeat Simple_repeat 1 140 -370 2020 150 0 0 chr9 111105821 111106114 -6756513 + AluSx SINE Alu 1 293 -19 308 234 19 19 chr9 111106114 111106190 -6756437 + (TGGA)n Simple_repeat Simple_repeat 140 510 0 423 289 79 0 chr9 111107735 111107887 -6754740 - MER117 DNA MER1_type -33 164 1 200 328 0 0 chr9 111107895 111107953 -6754674 - MIR SINE MIR -64 144 87 2036 175 28 65 chr9 111108085 111108581 -6754046 + L1MD3 LINE L1 6778 7255 -740 463 219 9 0 chr9 111108590 111108695 -6753932 + MLT1F1 LTR MaLR 1 106 -461 2066 72 15 0 chr9 111108697 111108959 -6753668 - AluSq SINE Alu -14 299 34 2258 94 0 0 chr9 111109577 111109876 -6752751 - AluY SINE Alu -12 299 1 228 236 0 0 chr9 111109923 111109978 -6752649 - MLT1I LTR MaLR -283 126 72 2390 65 3 3 chr9 111110237 111110545 -6752082 + AluY SINE Alu 1 308 -3 2032 144 0 3 chr9 111110589 111110902 -6751725 - AluSx SINE Alu 0 312 1 243 224 80 15 chr9 111111291 111111389 -6751238 + MIR SINE MIR 1 103 -105 618 280 44 8 chr9 111111491 111111741 -6750886 + LTR16A1 LTR ERVL 188 446 -11 264 260 39 0 chr9 111111750 111111827 -6750800 + MIR SINE MIR 95 174 -88 201 138 0 0 chr9 111112519 111112548 -6750079 + (GAAAA)n Simple_repeat Simple_repeat 4 32 0 508 311 77 25 chr9 111113547 111113734 -6748893 + MIR SINE MIR 3 206 -56 2269 99 0 3 chr9 111113734 111114038 -6748589 + AluSq SINE Alu 1 303 -10 508 311 77 25 chr9 111114038 111114085 -6748542 + MIR SINE MIR 206 249 -13 2244 100 0 0 chr9 111115050 111115349 -6747278 + AluSx SINE Alu 1 299 -13 224 352 259 13 chr9 111116229 111116461 -6746166 - MIR SINE MIR 0 262 7 * 366 292 53 0 chr9 111116447 111116560 -6746067 - MIR SINE MIR -79 183 65 1870 165 0 10 chr9 111116618 111116915 -6745712 - AluJb SINE Alu -18 294 1 351 0 0 0 chr9 111117280 111117319 -6745308 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 276 116 0 0 chr9 111117319 111117362 -6745265 - AluJo SINE Alu -19 283 241 970 142 79 32 chr9 111117363 111117553 -6745074 - AluJo SINE Alu -113 199 1 579 191 26 0 chr9 111118861 111118976 -6743651 + L1MB5 LINE L1 6057 6174 0 458 283 108 33 chr9 111119024 111119236 -6743391 - L2 LINE L2 -2 3311 3084 2362 258 38 7 chr9 111119455 111120168 -6742459 + L1ME3 LINE L1 5415 6149 -13 208 362 92 7 chr9 111121123 111121264 -6741363 + MIR SINE MIR 32 184 -78 341 191 24 8 chr9 111121894 111122020 -6740607 + (CA)n Simple_repeat Simple_repeat 1 128 0 397 328 37 12 chr9 111122394 111122586 -6740041 + MIR SINE MIR 35 230 -32 451 343 86 44 chr9 111123183 111123568 -6739059 - L2 LINE L2 -1 3271 2871 501 233 142 49 chr9 111123930 111124296 -6738331 - L2 LINE L2 -108 3205 2783 254 232 40 40 chr9 111124383 111124482 -6738145 + (TTCA)n Simple_repeat Simple_repeat 2 100 0 474 274 30 0 chr9 111124927 111125062 -6737565 - MIR3 SINE MIR -35 173 35 661 273 129 29 chr9 111125493 111125874 -6736753 + L2 LINE L2 2853 3271 -1 267 331 134 33 chr9 111126204 111126479 -6736148 + L2 LINE L2 2991 3293 -20 255 61 0 0 chr9 111126485 111126518 -6736109 + (TGAA)n Simple_repeat Simple_repeat 2 34 0 480 281 23 29 chr9 111126521 111126692 -6735935 + MIR SINE MIR 8 177 -85 245 350 7 36 chr9 111126999 111127136 -6735491 - MIR3 SINE MIR -13 195 63 427 139 3 80 chr9 111127820 111128202 -6734425 + (CA)n Simple_repeat Simple_repeat 1 352 0 223 326 9 26 chr9 111129247 111129364 -6733263 + MIR3 SINE MIR 63 178 -30 203 239 80 11 chr9 111129552 111129640 -6732987 + MIR SINE MIR 43 136 -72 288 296 177 60 chr9 111130324 111130658 -6731969 + L2 LINE L2 2804 3176 -96 300 354 62 7 chr9 111130792 111130936 -6731691 - HAL1 LINE L1 -1215 1292 1141 2080 158 0 0 chr9 111130956 111131267 -6731360 - AluJb SINE Alu -1 311 1 224 343 0 0 chr9 111131346 111131413 -6731214 - MIR SINE MIR -1 261 195 2052 91 3 18 chr9 111131813 111132122 -6730505 - AluSp SINE Alu 0 305 1 467 382 39 10 chr9 111132680 111133164 -6729463 - HERV16 LTR ERVL -1914 3740 3243 537 353 14 0 chr9 111133209 111133416 -6729211 - HERV16 LTR ERVL -2562 3202 2993 1557 204 43 17 chr9 111133452 111133809 -6728818 + MLT2D LTR ERVL 1 475 -45 2176 118 0 6 chr9 111133809 111134122 -6728505 - AluSx SINE Alu -1 311 1 388 205 36 12 chr9 111134165 111134248 -6728379 - L1MC4 LINE L1 -1348 6694 6610 3492 144 57 26 chr9 111134251 111134509 -6728118 - MER7C DNA MER2_type -2427 601 352 1891 136 14 34 chr9 111134509 111134625 -6728002 + AluSx SINE Alu 1 118 -194 2397 53 0 20 chr9 111134625 111134924 -6727703 + AluY SINE Alu 1 293 -18 1891 136 14 34 chr9 111134924 111135102 -6727525 + AluSx SINE Alu 118 289 -23 3492 144 57 26 chr9 111135102 111135425 -6727202 - MER7C DNA MER2_type -2676 352 2 789 341 40 27 chr9 111135692 111135924 -6726703 - HERV16 LTR ERVL -4349 647 419 1765 146 7 4 chr9 111135924 111136232 -6726395 - AluSx SINE Alu 0 313 5 789 341 40 27 chr9 111136232 111136546 -6726081 - HERV16 LTR ERVL -4577 419 93 4849 54 3 3 chr9 111136562 111137153 -6725474 + LTR10C LTR ERV1 1 591 0 413 163 0 0 chr9 111137167 111137247 -6725380 + ORSL DNA AcHobo 11 90 -185 613 134 20 60 chr9 111137247 111137322 -6725305 + L1MB3 LINE L1 5986 6054 -129 2131 108 14 0 chr9 111137322 111137617 -6725010 + AluSx SINE Alu 1 299 -13 613 134 20 60 chr9 111137617 111137690 -6724937 + L1MB3 LINE L1 6054 6128 -55 243 182 64 91 chr9 111137959 111138069 -6724558 + MIR SINE MIR 41 147 -61 270 277 93 3 chr9 111138465 111138589 -6724038 + MIR SINE MIR 52 184 -62 312 93 0 0 chr9 111139210 111139253 -6723374 + Alu SINE Alu 239 281 -19 1088 184 43 12 chr9 111139254 111139509 -6723118 - L1MB7 LINE L1 -62 6122 5860 2309 69 3 7 chr9 111139518 111139822 -6722805 - AluY SINE Alu 0 311 9 2195 104 0 25 chr9 111139949 111140266 -6722361 + AluSx SINE Alu 1 309 -3 361 281 14 29 chr9 111140458 111140597 -6722030 + MER103 DNA DNA 23 159 -7 395 294 162 20 chr9 111140820 111141024 -6721603 + L3 LINE CR1 1343 1575 -2 204 252 183 35 chr9 111141459 111141574 -6721053 + MIR3 SINE MIR 49 180 -28 2061 113 0 7 chr9 111142329 111142638 -6719989 + AluSx SINE Alu 1 307 0 203 216 34 0 chr9 111142642 111142730 -6719897 + (ATGGTG)n Simple_repeat Simple_repeat 1 91 0 742 299 35 0 chr9 111142746 111142977 -6719650 - MIR SINE MIR -1 261 23 209 354 133 0 chr9 111143445 111143558 -6719069 + MIR3 SINE MIR 81 208 0 394 185 25 0 chr9 111144710 111144791 -6717836 + MER103 DNA DNA 48 130 -36 358 247 31 3 chr9 111145441 111145547 -6717080 + MIR SINE MIR 46 151 -76 180 385 66 6 chr9 111145547 111145713 -6716914 - MER5B DNA MER1_type -2 176 1 1537 223 73 19 chr9 111145981 111146278 -6716349 + L1MD3 LINE L1 7490 7822 -173 2295 97 3 0 chr9 111146278 111146588 -6716039 + AluSx SINE Alu 2 312 0 1537 223 73 19 chr9 111146588 111146753 -6715874 + L1MD3 LINE L1 7822 7977 -18 354 275 305 0 chr9 111147344 111147475 -6715152 - MIR SINE MIR -12 250 80 1777 142 0 50 chr9 111147516 111147839 -6714788 - AluJb SINE Alu 0 312 6 813 134 47 8 chr9 111147866 111147993 -6714634 - FLAM_C SINE Alu 0 133 2 470 95 0 84 chr9 111148464 111148495 -6714132 - Charlie1 DNA MER1_type 0 2761 2729 2137 117 0 7 chr9 111148495 111148802 -6713825 - AluSx SINE Alu -7 305 1 470 95 0 84 chr9 111148802 111148865 -6713762 - Charlie1 DNA MER1_type -32 2729 2675 1992 139 0 0 chr9 111149007 111149295 -6713332 - AluSx SINE Alu -24 288 1 1536 228 85 22 chr9 111150110 111150570 -6712057 - MLT1D LTR MaLR -9 496 8 2101 132 0 13 chr9 111151420 111151731 -6710896 + AluSx SINE Alu 1 307 -5 2140 242 146 40 chr9 111152063 111152301 -6710326 - MER45B DNA AcHobo -541 1040 829 2193 100 0 3 chr9 111152301 111152601 -6710026 - AluSg1 SINE Alu -10 299 1 2140 242 146 40 chr9 111152601 111153247 -6709380 - MER45B DNA AcHobo -752 829 62 2242 110 0 0 chr9 111154493 111154802 -6707825 + AluSg SINE Alu 1 309 -1 783 169 54 0 chr9 111154803 111154933 -6707694 + AluJb SINE Alu 136 272 -40 564 343 29 32 chr9 111155039 111155386 -6707241 - L1MC4a LINE L1 -1906 5902 5557 422 230 126 15 chr9 111155398 111155533 -6707094 - L1ME LINE L1 -5915 155 6 2480 64 0 3 chr9 111155569 111155881 -6706746 - AluY SINE Alu 0 311 1 1776 164 10 16 chr9 111156072 111156382 -6706245 + AluJo SINE Alu 1 308 -4 290 299 51 0 chr9 111156498 111156635 -6705992 - L1P4 LINE L1 -701 5467 5324 1683 162 18 0 chr9 111156675 111156959 -6705668 + AluJb SINE Alu 7 295 -17 348 248 38 19 chr9 111157760 111157865 -6704762 + MIR SINE MIR 56 162 -100 199 353 150 6 chr9 111158053 111158220 -6704407 - MIR SINE MIR -44 218 28 1439 191 20 23 chr9 111158256 111158559 -6704068 - AluSx SINE Alu 0 312 11 2271 101 16 0 chr9 111158956 111159262 -6703365 + AluSq SINE Alu 1 311 -2 2049 117 7 0 chr9 111159273 111159555 -6703072 + AluSx SINE Alu 14 297 -15 2415 71 3 0 chr9 111159555 111159864 -6702763 + AluY SINE Alu 1 310 -1 2100 113 3 0 chr9 111160706 111161017 -6701610 + AluSx SINE Alu 1 312 0 694 342 40 0 chr9 111161032 111161254 -6701373 - MIR SINE MIR -30 232 2 222 300 14 29 chr9 111161836 111161906 -6700721 - MER5B DNA MER1_type -105 73 5 318 169 14 0 chr9 111162041 111162112 -6700515 - L1MB7 LINE L1 0 6184 6113 1864 151 0 3 chr9 111162112 111162404 -6700223 + AluJb SINE Alu 1 291 -21 2239 84 3 3 chr9 111162425 111162721 -6699906 + AluY SINE Alu 1 296 -15 1369 208 12 39 chr9 111162758 111162931 -6699696 - L1MB4 LINE L1 -1 6179 6018 2241 111 0 0 chr9 111162931 111163237 -6699390 + AluSx SINE Alu 1 306 -6 1369 208 12 39 chr9 111163237 111163400 -6699227 - L1MB4 LINE L1 -162 6018 5852 2109 129 3 0 chr9 111164257 111164551 -6698076 - AluSx SINE Alu -17 295 1 21 0 0 0 chr9 111164633 111164654 -6697973 + AT_rich Low_complexity Low_complexity 1 21 0 182 65 65 0 chr9 111164687 111164718 -6697909 + A-rich Low_complexity Low_complexity 2 34 0 2442 50 0 3 chr9 111164725 111165028 -6697599 + AluY SINE Alu 1 302 -9 2088 127 0 16 chr9 111165097 111165413 -6697214 + AluSx SINE Alu 1 311 -1 360 283 17 0 chr9 111165859 111165979 -6696648 + (ATG)n Simple_repeat Simple_repeat 3 124 0 646 226 90 84 chr9 111166751 111166837 -6695790 - MER46C DNA MER2_type 0 338 254 2200 88 0 10 chr9 111166837 111167132 -6695495 + AluSg SINE Alu 1 292 -18 646 226 90 84 chr9 111167132 111167368 -6695259 - MER46C DNA MER2_type -84 254 14 187 274 177 0 chr9 111168331 111168393 -6694234 + L2 LINE L2 3222 3294 -19 778 182 8 0 chr9 111168417 111168538 -6694089 + FLAM_C SINE Alu 1 122 -21 448 232 49 6 chr9 111168793 111168921 -6693706 - MIR SINE MIR -63 145 21 302 209 0 146 chr9 111168925 111168989 -6693638 + MER94 DNA DNA 1 73 -61 1752 168 3 16 chr9 111168989 111169293 -6693334 + AluJo SINE Alu 1 300 -12 2087 101 38 0 chr9 111169299 111169587 -6693040 + AluSx SINE Alu 1 299 -13 302 209 0 146 chr9 111169587 111169625 -6693002 + MER94 DNA DNA 78 94 -40 196 333 26 35 chr9 111170776 111170890 -6691737 - MIR3 SINE MIR -95 113 1 2353 99 0 0 chr9 111171402 111171714 -6690913 + AluSx SINE Alu 1 312 0 326 233 35 12 chr9 111171923 111172009 -6690618 + MIR SINE MIR 40 127 -81 2160 73 25 4 chr9 111172217 111172521 -6690106 + AluY SINE Alu 1 310 0 358 317 77 24 chr9 111172533 111172779 -6689848 + MER46C DNA MER2_type 80 338 0 320 317 23 7 chr9 111172786 111172931 -6689696 - MIR SINE MIR -63 145 3 2254 99 0 7 chr9 111173420 111173722 -6688905 + AluSc SINE Alu 1 300 -9 1879 167 7 10 chr9 111173979 111174284 -6688343 - AluSx SINE Alu -8 304 1 2198 99 23 0 chr9 111174287 111174591 -6688036 - AluSx SINE Alu -1 311 1 1322 255 50 0 chr9 111174925 111175309 -6687318 - L1MB5 LINE L1 -14 6160 5758 1103 79 0 0 chr9 111175510 111175649 -6686978 - AluSq/x SINE Alu -174 139 1 1682 197 0 7 chr9 111175766 111175928 -6686699 - AluJb SINE Alu -15 297 136 1751 101 108 4 chr9 111175928 111176196 -6686431 - AluSq SINE Alu -17 296 1 1682 197 0 7 chr9 111176196 111176332 -6686295 - AluJb SINE Alu -176 136 1 1291 221 64 18 chr9 111176332 111176721 -6685906 - L1MB5 LINE L1 -1010 5136 4730 34 0 0 0 chr9 111176753 111176787 -6685840 + AT_rich Low_complexity Low_complexity 1 34 0 2027 147 0 0 chr9 111176787 111177094 -6685533 - AluSx SINE Alu -5 307 1 971 204 48 48 chr9 111177095 111177409 -6685218 - L1MB5 LINE L1 -1394 4752 4439 2296 66 3 7 chr9 111177411 111177712 -6684915 - AluY SINE Alu -11 300 1 439 226 28 0 chr9 111177712 111177832 -6684795 + L1MB2 LINE L1 5937 6066 -105 2174 97 3 0 chr9 111177908 111178198 -6684429 - AluSq SINE Alu -22 291 1 1839 123 4 7 chr9 111178574 111178851 -6683776 - AluJo SINE Alu -36 276 1 258 328 126 0 chr9 111178889 111179008 -6683619 - MIR SINE MIR -16 246 113 337 374 35 6 chr9 111179019 111179190 -6683437 - MIR SINE MIR -3 259 84 708 239 30 5 chr9 111179641 111179842 -6682785 + MLT1A1 LTR MaLR 157 362 -3 352 119 8 203 chr9 111179843 111179889 -6682738 + L1MB8 LINE L1 6075 6128 -50 1415 136 88 54 chr9 111179889 111180038 -6682589 - AluJb SINE Alu -8 304 162 2156 122 0 0 chr9 111180038 111180342 -6682285 - AluSg1 SINE Alu -5 304 1 1415 136 88 54 chr9 111180342 111180486 -6682141 - AluJb SINE Alu -150 162 1 352 119 8 203 chr9 111180486 111180498 -6682129 + L1MB8 LINE L1 6128 6141 -37 1987 117 31 10 chr9 111180498 111180789 -6681838 - AluSx SINE Alu -15 297 1 352 119 8 203 chr9 111180789 111180847 -6681780 + L1MB8 LINE L1 6141 6169 -9 219 258 44 13 chr9 111181140 111181233 -6681394 - MIR SINE MIR -74 134 38 2241 81 14 0 chr9 111181487 111181783 -6680844 + AluSq SINE Alu 1 300 -13 259 379 24 8 chr9 111181925 111182049 -6680578 + MIR SINE MIR 21 146 -116 2170 107 0 7 chr9 111182329 111182628 -6679999 - AluSg SINE Alu -13 297 1 396 0 0 0 chr9 111183203 111183247 -6679380 + (CA)n Simple_repeat Simple_repeat 2 45 0 566 311 12 6 chr9 111183792 111183953 -6678674 + MIR SINE MIR 46 207 -55 2294 107 3 0 chr9 111184018 111184326 -6678301 - AluSx SINE Alu -3 309 1 221 314 186 10 chr9 111184328 111184430 -6678197 - MIR SINE MIR -115 147 28 1993 124 7 13 chr9 111188871 111189006 -6673621 + AluSx SINE Alu 1 135 -177 1642 92 80 16 chr9 111189006 111189255 -6673372 + AluSg SINE Alu 35 299 -11 1993 124 7 13 chr9 111189255 111189418 -6673209 + AluSx SINE Alu 135 297 -15 400 109 0 0 chr9 111189428 111189483 -6673144 + Alu SINE Alu 3 57 -253 1959 161 14 3 chr9 111189517 111189884 -6672743 + L1MB2 LINE L1 5690 6060 -111 2100 106 3 0 chr9 111189884 111190168 -6672459 + AluSq SINE Alu 1 285 -28 323 322 0 11 chr9 111190487 111190577 -6672050 - MIR SINE MIR -91 171 83 2141 115 3 10 chr9 111190666 111190978 -6671649 - AluSx SINE Alu -2 310 1 1866 139 16 50 chr9 111190997 111191206 -6671421 - AluJo SINE Alu 0 312 116 2107 124 3 7 chr9 111191206 111191512 -6671115 + AluSx SINE Alu 1 305 -7 1866 139 16 50 chr9 111191512 111191625 -6671002 - AluJo SINE Alu -196 116 1 243 271 47 0 chr9 111191807 111191892 -6670735 + MIR SINE MIR 90 178 -84 * 272 203 43 14 chr9 111191888 111191957 -6670670 + L2 LINE L2 3202 3272 0 479 273 33 8 chr9 111192820 111192941 -6669686 + MIR SINE MIR 32 155 -107 1383 127 55 8 chr9 111193162 111193399 -6669228 - L1MB3 LINE L1 0 6183 5936 2064 119 7 10 chr9 111193400 111193693 -6668934 + AluSx SINE Alu 1 292 -20 1759 62 31 0 chr9 111193704 111193930 -6668697 + L1PA5 LINE L1 5921 6153 -1 528 119 1 147 chr9 111193930 111193988 -6668639 - L1MB3 LINE L1 -231 5947 5922 1849 137 3 37 chr9 111193988 111194288 -6668339 - AluJo SINE Alu -22 290 1 528 119 1 147 chr9 111194288 111194378 -6668249 - L1MB3 LINE L1 -256 5922 5820 336 320 16 16 chr9 111194425 111194547 -6668080 - MIR SINE MIR -36 226 105 785 197 0 0 chr9 111194553 111194695 -6667932 - FLAM_C SINE Alu -1 142 1 277 269 39 39 chr9 111194698 111194802 -6667825 - MIR SINE MIR -147 115 12 181 315 79 0 chr9 111194870 111194959 -6667668 - L2 LINE L2 -18 3254 3159 1061 96 0 0 chr9 111195207 111195343 -6667284 + AluSq/x SINE Alu 1 136 -176 2069 100 28 3 chr9 111195343 111195632 -6666995 + AluSx SINE Alu 1 296 -16 236 150 0 0 chr9 111195655 111195695 -6666932 + AluSq/x SINE Alu 125 164 -138 226 351 128 0 chr9 111195767 111195861 -6666766 - MIR3 SINE MIR -15 193 88 2175 144 0 0 chr9 111198399 111198711 -6663916 - AluSx SINE Alu 0 312 1 282 273 0 0 chr9 111199730 111199796 -6662831 - MIR SINE MIR -62 146 81 2314 102 3 3 chr9 111199985 111200290 -6662337 + AluSx SINE Alu 1 305 -7 304 276 48 0 chr9 111200352 111200457 -6662170 - MER94 DNA DNA -23 111 2 220 263 212 0 chr9 111200553 111200671 -6661956 + MIR SINE MIR 118 260 -2 285 143 26 13 chr9 111200986 111201063 -6661564 + G-rich Low_complexity Low_complexity 2 79 0 723 176 0 0 chr9 111201850 111201981 -6660646 - AluJb SINE Alu -45 267 137 183 236 18 0 chr9 111203383 111203438 -6659189 - MIR SINE MIR -89 119 64 214 231 333 0 chr9 111203641 111203749 -6658878 + MIR SINE MIR 84 227 -35 2413 81 14 0 chr9 111204327 111204624 -6658003 - AluSx SINE Alu -11 301 1 888 172 7 0 chr9 111204658 111204803 -6657824 - AluJb SINE Alu -30 282 137 337 320 105 0 chr9 111204943 111205096 -6657531 - MIR SINE MIR -14 248 80 2424 96 0 0 chr9 111205491 111205793 -6656834 - AluSg SINE Alu -8 302 1 546 200 32 58 chr9 111205911 111205953 -6656674 - MIR SINE MIR -77 185 143 1928 166 7 0 chr9 111205953 111206242 -6656385 - AluJb SINE Alu -21 291 1 546 200 32 58 chr9 111206242 111206354 -6656273 - MIR SINE MIR -119 143 35 2354 107 13 0 chr9 111206502 111206810 -6655817 - AluSx SINE Alu 0 312 1 194 224 171 40 chr9 111208051 111208127 -6654500 - MIR SINE MIR 0 262 177 620 180 0 16 chr9 111208140 111208268 -6654359 + AluJb SINE Alu 182 307 -5 397 209 5 171 chr9 111208269 111208456 -6654171 - MIR SINE MIR -79 183 28 256 317 30 20 chr9 111208500 111208601 -6654026 + MIR3 SINE MIR 85 186 -22 333 219 0 0 chr9 111209117 111209181 -6653446 + MIR SINE MIR 85 148 -114 1014 167 0 0 chr9 111209349 111209511 -6653116 + FRAM SINE Alu 1 162 -4 203 103 0 0 chr9 111209529 111209558 -6653069 - MIR SINE MIR -201 61 33 1841 114 83 8 chr9 111209950 111210242 -6652385 - AluSx SINE Alu 0 312 1 1623 148 55 0 chr9 111210419 111210675 -6651952 - AluJo SINE Alu -1 311 42 241 195 0 0 chr9 111210675 111210716 -6651911 - L2 LINE L2 -10 3303 3263 195 333 58 0 chr9 111210827 111210896 -6651731 + MIR SINE MIR 59 131 -131 * 217 279 59 0 chr9 111210892 111210960 -6651667 - L2 LINE L2 -1 3312 3241 1701 139 0 8 chr9 111211098 111211343 -6651284 + AluJo SINE Alu 1 243 -69 2144 124 13 0 chr9 111211411 111211718 -6650909 + AluSx SINE Alu 1 311 -1 289 244 111 0 chr9 111211718 111211808 -6650819 - L2 LINE L2 -276 3037 2938 197 314 23 47 chr9 111212378 111212464 -6650163 - MIR3 SINE MIR -40 168 85 2188 108 21 0 chr9 111212798 111213086 -6649541 - AluSx SINE Alu -7 305 12 246 242 222 10 chr9 111213104 111213203 -6649424 + MIR SINE MIR 81 200 -62 198 300 89 33 chr9 111213553 111213643 -6648984 + L3 LINE CR1 1410 1504 -73 303 28 0 0 chr9 111213786 111213822 -6648805 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 2382 105 0 3 chr9 111213874 111214187 -6648440 + AluSx SINE Alu 1 312 0 325 102 0 0 chr9 111214475 111214524 -6648103 + MIR SINE MIR 114 162 -100 2096 133 0 7 chr9 111214525 111214825 -6647802 + AluJb SINE Alu 1 298 -14 230 172 75 86 chr9 111214941 111215034 -6647593 - MIR SINE MIR -69 193 102 2332 113 3 0 chr9 111215091 111215400 -6647227 - AluSx SINE Alu -2 310 1 2369 61 10 45 chr9 111215477 111215789 -6646838 + AluSq SINE Alu 1 301 -12 390 326 8 8 chr9 111217180 111217312 -6645315 - MIR SINE MIR -125 137 6 204 342 69 73 chr9 111217550 111217810 -6644817 - L2 LINE L2 0 3313 3055 2358 112 0 0 chr9 111217813 111218118 -6644509 + AluSx SINE Alu 1 305 -7 357 253 0 12 chr9 111218118 111218201 -6644426 + MIR SINE MIR 9 90 -172 331 157 0 121 chr9 111218204 111218287 -6644340 + AluS SINE Alu 228 300 0 200 225 50 92 chr9 111218723 111218843 -6643784 + MER5B DNA MER1_type 1 115 -63 280 175 0 3 chr9 111219707 111219765 -6642862 - MIR SINE MIR -50 158 102 2561 76 0 6 chr9 111219765 111220079 -6642548 + AluSx SINE Alu 1 312 0 2411 96 0 0 chr9 111220289 111220590 -6642037 + AluSq SINE Alu 1 301 -12 697 290 110 45 chr9 111220596 111220862 -6641765 - L1ME4a LINE L1 -12 6109 5862 2317 102 0 0 chr9 111220862 111221156 -6641471 - AluSx SINE Alu -13 299 6 697 290 110 45 chr9 111221156 111221417 -6641210 - L1ME4a LINE L1 -259 5862 5548 393 289 14 24 chr9 111222021 111222188 -6640439 - MIR SINE MIR -41 167 4 253 265 41 61 chr9 111222618 111222683 -6639944 + MIR SINE MIR 76 140 -122 2321 127 0 0 chr9 111222683 111222990 -6639637 - AluSx SINE Alu -5 307 1 253 265 41 61 chr9 111222990 111223022 -6639605 + MIR SINE MIR 140 171 -91 228 135 0 0 chr9 111223076 111223113 -6639514 + (ATG)n Simple_repeat Simple_repeat 2 38 0 2271 112 16 3 chr9 111223141 111223444 -6639183 - AluSx SINE Alu -4 308 2 482 355 41 0 chr9 111223530 111223727 -6638900 + MIR SINE MIR 50 254 -8 2325 117 0 0 chr9 111223817 111224126 -6638501 + AluSq SINE Alu 2 310 -3 199 328 0 0 chr9 111224200 111224264 -6638363 - MIR SINE MIR -118 144 81 408 287 69 9 chr9 111224276 111224428 -6638199 - MIR SINE MIR -43 165 3 445 264 43 16 chr9 111224513 111224681 -6637946 + MIR3 SINE MIR 3 178 -63 416 300 0 8 chr9 111226047 111226167 -6636460 - MIR3 SINE MIR -3 205 87 217 318 243 0 chr9 111226536 111226684 -6635943 - L2 LINE L2 -2 3270 3087 215 271 110 34 chr9 111227858 111227976 -6634651 - MIR SINE MIR -68 194 68 2610 47 0 0 chr9 111228029 111228325 -6634302 + AluY SINE Alu 1 296 -15 285 305 0 0 chr9 111228402 111228497 -6634130 + MIR SINE MIR 39 133 -129 335 259 19 10 chr9 111228500 111228605 -6634022 + L1MC4 LINE L1 1998 6983 -1339 2329 111 0 0 chr9 111228606 111228913 -6633714 - AluSx SINE Alu -5 307 1 2593 45 0 6 chr9 111228915 111229228 -6633399 - AluY SINE Alu 0 311 1 1896 135 3 37 chr9 111229228 111229525 -6633102 - AluJo SINE Alu -15 297 11 274 256 364 0 chr9 111230601 111230730 -6631897 - MIR SINE MIR -3 259 84 2120 106 0 7 chr9 111231148 111231441 -6631186 - AluSx SINE Alu -15 297 7 518 175 31 0 chr9 111231588 111231685 -6630942 + U6 snRNA snRNA 4 103 -4 2195 127 3 0 chr9 111231699 111231999 -6630628 + AluSx SINE Alu 1 301 -11 208 288 126 18 chr9 111233219 111233330 -6629297 - MIR3 SINE MIR -1 207 85 626 260 69 20 chr9 111233399 111233603 -6629024 - MIR SINE MIR 0 262 49 1965 136 14 0 chr9 111234213 111234500 -6628127 - AluSx SINE Alu -21 291 1 2477 93 0 3 chr9 111234730 111235042 -6627585 - AluSx SINE Alu -1 311 1 2025 158 0 16 chr9 111236269 111236586 -6626041 - AluJb SINE Alu 0 312 1 2306 114 19 0 chr9 111236704 111237011 -6625616 - AluSq SINE Alu 0 313 1 2109 143 3 10 chr9 111237887 111238201 -6624426 - AluJb SINE Alu 0 312 1 215 299 78 0 chr9 111238423 111238500 -6624127 - L2 LINE L2 -1 3271 3189 1762 192 7 0 chr9 111238545 111238842 -6623785 - AluJo SINE Alu -13 299 1 427 336 55 34 chr9 111239101 111239339 -6623288 - MIR SINE MIR 0 262 20 1184 151 163 85 chr9 111239709 111239967 -6622660 - AluJo SINE Alu -34 278 1 1521 134 13 13 chr9 111240635 111240867 -6621760 - AluSg/x SINE Alu -10 302 71 277 295 102 25 chr9 111241788 111242032 -6620595 - HAL1 LINE L1 0 2507 2245 2147 101 27 3 chr9 111242150 111242448 -6620179 - AluSx SINE Alu -7 305 1 186 103 0 0 chr9 111242701 111242730 -6619897 + (CTTG)n Simple_repeat Simple_repeat 2 30 0 426 196 0 0 chr9 111242760 111242852 -6619775 + C-rich Low_complexity Low_complexity 1 92 0 1878 143 4 0 chr9 111242856 111243115 -6619512 - AluSx SINE Alu -52 260 1 306 125 0 0 chr9 111243828 111243876 -6618751 + (T)n Simple_repeat Simple_repeat 1 48 0 309 242 137 0 chr9 111245619 111245714 -6616913 + L1ME4a LINE L1 5746 5853 -268 418 283 35 41 chr9 111245787 111245932 -6616695 + L1ME4a LINE L1 5956 6099 -22 1756 197 17 0 chr9 111246076 111246370 -6616257 - AluJb SINE Alu -7 305 7 21 36 0 0 chr9 111247548 111247576 -6615051 + AT_rich Low_complexity Low_complexity 1 28 0 1845 162 0 10 chr9 111247616 111247906 -6614721 - AluJb SINE Alu -25 287 1 407 346 142 17 chr9 111247954 111248243 -6614384 - L1ME LINE L1 -439 5682 5358 201 323 24 71 chr9 111249705 111249832 -6612795 + L2 LINE L2 2637 2757 -557 212 219 0 47 chr9 111249895 111249959 -6612668 + L2 LINE L2 3156 3216 -97 343 215 11 11 chr9 111250140 111250233 -6612394 - L1MC/D LINE L1 -2000 5808 5716 2252 98 3 0 chr9 111251245 111251540 -6611087 + AluSx SINE Alu 1 296 -16 1558 160 87 4 chr9 111251610 111251885 -6610742 - AluJo SINE Alu -14 298 1 22 0 0 0 chr9 111251887 111251909 -6610718 + AT_rich Low_complexity Low_complexity 1 22 0 1279 194 36 42 chr9 111252366 111252502 -6610125 - L1ME3A LINE L1 -1 6169 6034 1638 105 0 0 chr9 111252502 111252721 -6609906 + AluSx SINE Alu 1 219 -93 1279 194 36 42 chr9 111252721 111252920 -6609707 - L1ME3A LINE L1 -136 6034 5836 639 294 35 0 chr9 111252926 111253127 -6609500 - L1ME3A LINE L1 -375 5795 5588 532 270 135 14 chr9 111253122 111253381 -6609246 - L1M2 LINE L1 -611 5551 5325 * 183 80 0 0 chr9 111253381 111253406 -6609221 + (CA)n Simple_repeat Simple_repeat 2 26 0 532 270 135 14 chr9 111253406 111253656 -6608971 - L1M2 LINE L1 -837 5325 4960 702 310 139 39 chr9 111253914 111254814 -6607813 + L2 LINE L2 2318 3312 -1 394 283 9 19 chr9 111255501 111255607 -6607020 + MIR SINE MIR 39 143 -119 25 31 0 0 chr9 111255645 111255677 -6606950 + AT_rich Low_complexity Low_complexity 1 32 0 826 267 78 0 chr9 111255791 111256023 -6606604 - MIR SINE MIR -5 257 8 1653 143 3 57 chr9 111256702 111257002 -6605625 - AluJo SINE Alu -12 300 17 183 24 24 71 chr9 111257071 111257113 -6605514 + (TAAA)n Simple_repeat Simple_repeat 4 43 0 341 330 32 65 chr9 111257142 111257327 -6605300 - MIR SINE MIR -33 229 51 1690 169 21 4 chr9 111257384 111257663 -6604964 - AluJb SINE Alu -17 295 12 280 283 160 9 chr9 111258298 111258404 -6604223 - MIR SINE MIR -126 136 15 27 0 0 0 chr9 111258807 111258834 -6603793 + AT_rich Low_complexity Low_complexity 1 27 0 1299 92 5 5 chr9 111258834 111259019 -6603608 - L1PB1 LINE L1 -7 6144 5960 279 133 0 0 chr9 111259020 111259065 -6603562 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 479 77 31 0 chr9 111259072 111259137 -6603490 - AluSg/x SINE Alu -30 282 216 833 96 0 0 chr9 111259137 111259241 -6603386 - AluSq/x SINE Alu -205 107 4 4752 154 13 38 chr9 111259242 111260720 -6601907 - L1PB1 LINE L1 -176 5975 4557 2590 65 0 0 chr9 111260720 111261029 -6601598 - AluY SINE Alu -2 309 1 4752 154 13 38 chr9 111261029 111261431 -6601196 - L1PB1 LINE L1 -1594 4557 4147 905 219 24 0 chr9 111261565 111261734 -6600893 - FAM SINE Alu -2 173 1 183 42 0 0 chr9 111261740 111261764 -6600863 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1645 163 14 24 chr9 111261768 111262056 -6600571 - AluJo SINE Alu -26 286 2 2260 106 0 22 chr9 111262057 111262231 -6600396 - AluSx SINE Alu -7 305 140 2227 131 0 0 chr9 111262231 111262543 -6600084 - AluSx SINE Alu 0 312 1 2260 106 0 22 chr9 111262543 111262680 -6599947 - AluSx SINE Alu -172 140 1 2031 140 0 0 chr9 111262683 111262976 -6599651 - AluSx SINE Alu -19 293 1 1460 116 65 0 chr9 111263415 111263630 -6598997 - AluSq SINE Alu -84 229 1 738 176 0 0 chr9 111263692 111263811 -6598816 - FLAM_C SINE Alu -24 119 1 379 271 43 64 chr9 111264095 111264173 -6598454 + L1ME4a LINE L1 5522 5600 -521 2368 87 3 3 chr9 111264173 111264483 -6598144 + AluSp SINE Alu 1 310 -3 379 271 43 64 chr9 111264483 111264733 -6597894 + L1ME4a LINE L1 5600 5843 -278 2348 77 0 3 chr9 111265857 111266154 -6596473 - AluSg SINE Alu -14 296 1 1141 176 124 73 chr9 111266323 111266502 -6596125 - MER7A DNA MER2_type -2693 345 177 1444 99 80 0 chr9 111266502 111266715 -6595912 - MER30 DNA MER1_type 0 230 1 1141 176 124 73 chr9 111266715 111266865 -6595762 - MER7A DNA MER2_type -2861 177 1 371 269 75 22 chr9 111267850 111267984 -6594643 + MIR SINE MIR 49 189 -73 200 247 0 12 chr9 111268792 111268873 -6593754 + (TG)n Simple_repeat Simple_repeat 2 81 0 27 29 0 0 chr9 111269142 111269176 -6593451 + AT_rich Low_complexity Low_complexity 1 34 0 806 145 0 0 chr9 111269176 111269293 -6593334 - AluJb SINE Alu -195 117 1 793 162 108 36 chr9 111269727 111269894 -6592733 + AluJo SINE Alu 124 302 -10 3434 169 38 5 chr9 111270074 111270738 -6591889 + L1MB3 LINE L1 5497 6182 -1 310 210 226 48 chr9 111270979 111271103 -6591524 - L2 LINE L2 0 3313 3168 28 71 0 0 chr9 111271357 111271413 -6591214 + AT_rich Low_complexity Low_complexity 1 56 0 757 240 86 11 chr9 111271485 111271752 -6590875 - L1MC4 LINE L1 -143 7899 7613 1299 245 87 6 chr9 111271797 111272267 -6590360 - L1ME3A LINE L1 -208 5962 5455 460 271 68 62 chr9 111272285 111272482 -6590145 - L1ME3A LINE L1 -771 5375 5174 1822 167 0 16 chr9 111272482 111272787 -6589840 - AluJo SINE Alu -12 300 1 460 271 68 62 chr9 111272787 111272958 -6589669 - L1ME3A LINE L1 -972 5174 5005 994 236 90 14 chr9 111272961 111273317 -6589310 - L1ME1 LINE L1 -5 6161 5779 343 321 31 0 chr9 111273336 111273495 -6589132 - L1ME3A LINE L1 -1156 4990 4827 2313 100 0 10 chr9 111273622 111273931 -6588696 - AluSc SINE Alu -3 306 1 611 185 0 34 chr9 111273959 111274078 -6588549 + FLAM_A SINE Alu 1 115 -18 683 188 19 0 chr9 111274085 111274239 -6588388 - MER3 DNA MER1_type -86 123 14 652 252 76 14 chr9 111274250 111274460 -6588167 - MER58A DNA MER1_type -1 223 1 1310 161 20 0 chr9 111274539 111274787 -6587840 + L1MB3 LINE L1 5930 6182 -1 876 89 0 0 chr9 111274807 111274919 -6587708 + AluSp/q SINE Alu 184 295 -18 647 261 111 35 chr9 111274963 111275384 -6587243 - L1ME3A LINE L1 -1537 4609 4149 300 53 0 0 chr9 111275384 111275422 -6587205 + (TTA)n Simple_repeat Simple_repeat 2 39 0 647 261 111 35 chr9 111275422 111275460 -6587167 - L1ME3A LINE L1 -1997 4149 4115 225 93 0 23 chr9 111275528 111275571 -6587056 - L1ME3A LINE L1 -2229 3917 3876 478 150 0 0 chr9 111276055 111276135 -6586492 - MLT1E2 LTR MaLR 0 626 547 7629 29 0 0 chr9 111276150 111277136 -6585491 - L1PA3 LINE L1 0 6155 5170 972 166 11 0 chr9 111277147 111277328 -6585299 + MER3 DNA MER1_type 18 200 -9 2176 112 0 13 chr9 111277640 111277953 -6584674 - AluSg SINE Alu -1 309 1 257 111 0 0 chr9 111277957 111278002 -6584625 - Alu SINE Alu 0 302 258 885 158 0 0 chr9 111278002 111278129 -6584498 - AluJo/FLAM SINE Alu -185 127 1 2387 98 0 16 chr9 111279034 111279351 -6583276 - AluSx SINE Alu 0 312 1 911 138 0 0 chr9 111280633 111280763 -6581864 + FLAM_C SINE Alu 1 130 -3 245 301 155 3 chr9 111280785 111280900 -6581727 - MIR SINE MIR -65 143 15 1873 167 0 16 chr9 111280921 111281226 -6581401 - AluJb SINE Alu -12 300 1 613 150 16 47 chr9 111281497 111281624 -6581003 + MER20 DNA MER1_type 93 215 -4 331 346 79 0 chr9 111282416 111282517 -6580110 + L2 LINE L2 3134 3242 -30 1636 178 7 29 chr9 111283568 111283900 -6578727 - AluJb SINE Alu 0 325 1 183 259 17 86 chr9 111284841 111284899 -6577728 + L2 LINE L2 3254 3307 -6 21 0 0 0 chr9 111285022 111285043 -6577584 + AT_rich Low_complexity Low_complexity 1 21 0 180 77 0 0 chr9 111285426 111285452 -6577175 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 951 284 78 52 chr9 111285452 111285914 -6576713 - L2 LINE L2 -13 3300 2827 2168 149 83 11 chr9 111285918 111286651 -6575976 - L1M3 LINE L1 -485 5695 4912 * 2449 197 47 77 chr9 111286649 111286715 -6575912 - L1MEc LINE L1 -3985 2411 2345 488 116 18 89 chr9 111286715 111286827 -6575800 + L1MB3 LINE L1 6080 6183 0 2449 197 47 77 chr9 111286827 111286863 -6575764 - L1MEc LINE L1 -4051 2345 2309 2186 104 11 70 chr9 111286863 111287218 -6575409 + MER1B DNA MER1_type 2 335 -2 2449 197 47 77 chr9 111287218 111287703 -6574924 - L1MEc LINE L1 -4087 2309 1856 2219 89 0 0 chr9 111287703 111287984 -6574643 - AluSx SINE Alu -31 281 1 2449 197 47 77 chr9 111287984 111288272 -6574355 - L1MEc LINE L1 -4540 1856 1561 305 233 206 48 chr9 111288355 111288583 -6574044 - L1ME4a LINE L1 -27 6094 5831 2310 110 3 0 chr9 111288620 111288929 -6573698 - AluSx SINE Alu -2 310 1 2411 83 0 7 chr9 111288935 111289235 -6573392 - AluSx SINE Alu -14 298 1 2286 119 0 0 chr9 111291976 111292286 -6570341 - AluSx SINE Alu -2 310 1 283 325 76 54 chr9 111292537 111292759 -6569868 - MIR SINE MIR -30 232 13 396 279 54 0 chr9 111293325 111293436 -6569191 - L2 LINE L2 0 3313 3197 250 154 0 0 chr9 111293838 111293877 -6568750 - 5S rRNA rRNA -82 39 1 311 287 50 72 chr9 111295409 111295590 -6567037 - L1MC4a LINE L1 -1898 5910 5734 2185 105 0 14 chr9 111295781 111296087 -6566540 + AluSx SINE Alu 1 302 0 240 35 0 0 chr9 111296766 111296795 -6565832 + (T)n Simple_repeat Simple_repeat 1 29 0 2020 156 0 3 chr9 111297267 111297568 -6565059 + AluJo SINE Alu 11 310 -2 22 0 0 0 chr9 111297679 111297701 -6564926 + AT_rich Low_complexity Low_complexity 1 22 0 2139 138 3 22 chr9 111298232 111298550 -6564077 - AluSx SINE Alu 0 312 1 22 0 0 0 chr9 111298645 111298667 -6563960 + AT_rich Low_complexity Low_complexity 1 22 0 837 172 0 0 chr9 111298819 111298947 -6563680 - AluJb SINE Alu -63 249 122 802 141 55 16 chr9 111299002 111299130 -6563497 - AluJb SINE Alu -179 133 1 2270 83 7 0 chr9 111300343 111300621 -6562006 + AluSp SINE Alu 1 280 -33 2191 117 0 16 chr9 111300753 111301060 -6561567 - AluSg SINE Alu -8 302 1 709 281 116 9 chr9 111301073 111301297 -6561330 - MIR SINE MIR -13 249 2 182 280 0 20 chr9 111303936 111303986 -6558641 - L3 LINE CR1 -13 1564 1516 185 291 190 0 chr9 111304465 111304544 -6558083 - L2 LINE L2 -1 3271 3178 190 273 0 36 chr9 111304838 111304893 -6557734 - MIR SINE MIR -101 107 55 996 126 0 0 chr9 111304893 111305028 -6557599 + AluSq/x SINE Alu 1 135 -178 2353 93 3 0 chr9 111305028 111305328 -6557299 + AluSx SINE Alu 2 302 -10 1164 104 6 12 chr9 111305786 111305949 -6556678 + AluSc SINE Alu 1 162 -147 1344 143 33 0 chr9 111305973 111306183 -6556444 + AluSc SINE Alu 83 299 -10 1445 173 8 4 chr9 111306570 111306813 -6555814 - AluJo SINE Alu -19 293 50 229 323 0 0 chr9 111306949 111307011 -6555616 + (TA)n Simple_repeat Simple_repeat 1 62 0 1820 154 0 55 chr9 111307011 111307341 -6555286 - AluSx SINE Alu 0 312 1 588 169 0 85 chr9 111307478 111307514 -6555113 - MIR SINE MIR -21 241 204 2270 85 0 0 chr9 111307514 111307844 -6554783 - AluY SINE Alu 0 330 1 588 169 0 85 chr9 111307844 111307967 -6554660 - MIR SINE MIR -58 204 99 385 329 112 53 chr9 111308237 111308559 -6554068 + L1ME LINE L1 3 343 -5776 417 316 81 47 chr9 111308711 111309008 -6553619 + L1ME LINE L1 706 1012 -5107 938 218 5 11 chr9 111309016 111309204 -6553423 - MER58A DNA MER1_type -33 191 5 407 273 192 24 chr9 111309205 111309671 -6552956 + L1ME LINE L1 1005 1596 -4714 331 111 0 0 chr9 111309676 111309735 -6552892 + Alu SINE Alu 247 296 -5 347 291 64 9 chr9 111309807 111309917 -6552710 + L1ME LINE L1 5182 5297 -832 1279 213 35 9 chr9 111309920 111310258 -6552369 + L1ME LINE L1 5454 5800 -345 2082 131 40 0 chr9 111310284 111310582 -6552045 - AluSx SINE Alu -2 310 1 445 257 102 75 chr9 111310596 111310733 -6551894 + L1ME3A LINE L1 5653 5785 -385 2019 147 6 10 chr9 111310733 111311045 -6551582 - AluJb SINE Alu -1 311 1 1718 166 17 17 chr9 111311048 111311344 -6551283 - AluJb SINE Alu -16 296 1 445 257 102 75 chr9 111311344 111311428 -6551199 + L1ME3A LINE L1 5786 5884 -286 396 235 122 10 chr9 111311545 111311643 -6550984 + L2 LINE L2 3204 3312 -1 1348 259 141 36 chr9 111311795 111312328 -6550299 - MLT1G1 LTR MaLR -6 589 1 2386 141 14 96 chr9 111312534 111313015 -6549612 + L1MB4 LINE L1 5364 5883 -297 2638 56 0 0 chr9 111313015 111313321 -6549306 + AluY SINE Alu 1 306 -5 2386 141 14 96 chr9 111313321 111313335 -6549292 + L1MB4 LINE L1 5883 5897 -283 2236 91 10 3 chr9 111313335 111313632 -6548995 + AluSc SINE Alu 1 299 -10 2386 141 14 96 chr9 111313632 111313688 -6548939 + L1MB4 LINE L1 5897 5956 -224 1668 174 0 37 chr9 111313688 111313982 -6548645 + AluJb SINE Alu 1 283 -29 2096 133 0 10 chr9 111313992 111314293 -6548334 - AluSx SINE Alu -14 298 1 2386 141 14 96 chr9 111314293 111314309 -6548318 + L1MB4 LINE L1 5880 5896 -284 642 233 108 63 chr9 111314800 111314947 -6547680 + L1ME LINE L1 693 832 -5238 2379 81 3 0 chr9 111314947 111315243 -6547384 + AluSg SINE Alu 1 297 -13 642 233 108 63 chr9 111315243 111315473 -6547154 + L1ME LINE L1 832 1087 -4983 519 206 47 16 chr9 111315490 111315661 -6546966 + L1M4 LINE L1 4415 4589 -1557 369 280 166 16 chr9 111315700 111315893 -6546734 - L2 LINE L2 -62 3251 3030 872 198 43 59 chr9 111315913 111316130 -6546497 - L1MC5 LINE L1 -370 7591 7379 6215 135 29 26 chr9 111316130 111317198 -6545429 + MER11C LTR ERVK 1 1071 0 872 198 43 59 chr9 111317198 111317283 -6545344 - L1MC5 LINE L1 -582 7379 7294 636 230 83 23 chr9 111317329 111317594 -6545033 + L1MC5 LINE L1 7640 7920 -41 2218 108 10 0 chr9 111317778 111318074 -6544553 - AluSp SINE Alu -14 299 1 333 0 0 0 chr9 111318351 111318388 -6544239 + (TTG)n Simple_repeat Simple_repeat 2 38 0 471 258 264 45 chr9 111318410 111318724 -6543903 - L2 LINE L2 -357 2957 2575 352 304 7 15 chr9 111318879 111319014 -6543613 - MIR SINE MIR -3 259 126 2258 103 45 0 chr9 111320497 111320789 -6541838 - AluSq SINE Alu -8 305 1 2454 84 3 10 chr9 111320813 111321123 -6541504 - AluY SINE Alu -1 310 3 2408 86 20 0 chr9 111321125 111321426 -6541201 - AluSx SINE Alu -5 307 1 183 243 230 0 chr9 111322143 111322217 -6540410 - MIR SINE MIR -60 148 58 477 289 32 19 chr9 111322447 111322603 -6540024 - MER63A DNA MER1_type 0 210 53 273 319 13 57 chr9 111323313 111323470 -6539157 + L2 LINE L2 2716 2865 -449 433 278 80 20 chr9 111323694 111323892 -6538735 - MIR SINE MIR -6 256 40 373 332 159 9 chr9 111325197 111325417 -6537210 - MIR SINE MIR -9 253 1 2330 103 0 0 chr9 111327762 111328064 -6534563 - AluSc SINE Alu -7 302 1 24 0 0 0 chr9 111328299 111328323 -6534304 + AT_rich Low_complexity Low_complexity 1 24 0 2785 35 0 0 chr9 111328323 111328633 -6533994 - AluY SINE Alu -1 310 1 259 237 175 0 chr9 111328643 111328757 -6533870 - L1ME3A LINE L1 -3 6167 6034 868 122 0 0 chr9 111329599 111329714 -6532913 + FLAM_C SINE Alu 20 134 -9 1888 168 0 20 chr9 111329732 111330035 -6532592 + AluJb SINE Alu 3 299 -13 431 271 167 11 chr9 111330617 111330829 -6531798 + MIR SINE MIR 7 249 -13 1978 125 50 4 chr9 111335479 111335760 -6526867 + AluJo SINE Alu 1 294 -18 2173 72 4 0 chr9 111335805 111336068 -6526559 - AluY SINE Alu -25 286 23 194 362 128 21 chr9 111336320 111336461 -6526166 - MIR SINE MIR -72 190 35 198 0 0 0 chr9 111336512 111336534 -6526093 + (A)n Simple_repeat Simple_repeat 1 22 0 1826 151 14 3 chr9 111337328 111337619 -6525008 + AluJb SINE Alu 1 294 -18 2007 107 12 86 chr9 111337629 111337955 -6524672 + AluSx SINE Alu 1 302 -10 281 301 53 53 chr9 111340870 111341003 -6521624 + MIR SINE MIR 60 192 -70 193 333 49 0 chr9 111341237 111341318 -6521309 - MER5A DNA MER1_type -89 100 16 2243 114 7 0 chr9 111341665 111341972 -6520655 - AluSx SINE Alu -3 309 1 431 242 70 25 chr9 111342335 111342492 -6520135 + MER103 DNA DNA 2 165 -1 380 255 125 29 chr9 111342626 111342834 -6519793 - MIR SINE MIR 0 262 35 301 86 35 52 chr9 111344593 111344651 -6517976 + Alu SINE Alu 250 306 -2 1439 269 38 12 chr9 111344651 111345230 -6517397 + L1MEc LINE L1 133 771 -5625 2058 139 0 3 chr9 111345532 111345833 -6516794 + AluSx SINE Alu 2 301 -11 737 144 0 79 chr9 111345840 111345979 -6516648 + AluSg SINE Alu 2 129 -181 2339 109 0 6 chr9 111346258 111346570 -6516057 + AluSx SINE Alu 1 310 -2 1953 154 0 38 chr9 111346587 111346906 -6515721 + AluJb SINE Alu 1 307 -5 1191 95 0 7 chr9 111346957 111347104 -6515523 + AluSq/x SINE Alu 1 146 -167 1043 264 41 43 chr9 111347104 111347195 -6515432 + L1MEc LINE L1 827 917 -5479 2640 40 0 0 chr9 111347195 111347492 -6515135 + AluY SINE Alu 1 297 -14 1043 264 41 43 chr9 111347492 111347884 -6514743 + L1MEc LINE L1 917 1309 -5087 384 191 77 107 chr9 111347854 111347948 -6514679 + L1MEc LINE L1 1770 1859 -4537 * 2397 36 4 33 chr9 111347948 111348238 -6514389 + AluY SINE Alu 1 283 -28 186 0 40 0 chr9 111348238 111348263 -6514364 + (TAAA)n Simple_repeat Simple_repeat 2 164 0 384 191 77 107 chr9 111348263 111348335 -6514292 + L1MEc LINE L1 1859 1932 -4464 2547 78 0 7 chr9 111348335 111348643 -6513984 + AluY SINE Alu 1 306 -5 4942 189 58 139 chr9 111348647 111348704 -6513923 + L1MEc LINE L1 2576 2636 -3579 1964 156 0 0 chr9 111348704 111349009 -6513618 - AluJo SINE Alu -5 307 13 4942 189 58 139 chr9 111349009 111349195 -6513432 + L1MEc LINE L1 2636 2835 -3380 8514 51 4 4 chr9 111349195 111350202 -6512425 + LTR13 LTR ERVK 1 1007 0 4942 189 58 139 chr9 111350202 111350452 -6512175 + L1MEc LINE L1 2835 3104 -3111 1157 155 0 29 chr9 111350452 111350477 -6512150 + AluSg/x SINE Alu 110 134 -176 1982 142 3 0 chr9 111350477 111350787 -6511840 + AluSq SINE Alu 2 312 0 1157 155 0 29 chr9 111350787 111350966 -6511661 + AluSg/x SINE Alu 134 309 -1 4942 189 58 139 chr9 111350966 111352203 -6510424 + L1MEc LINE L1 3104 4440 -1775 1751 153 7 20 chr9 111352203 111352497 -6510130 - AluSx SINE Alu -22 290 1 4942 189 58 139 chr9 111352497 111352685 -6509942 + L1MEc LINE L1 4440 4481 -1734 2223 80 3 7 chr9 111352685 111352986 -6509641 + AluY SINE Alu 1 300 -11 4942 189 58 139 chr9 111352986 111353302 -6509325 + L1MEc LINE L1 4481 4821 -1394 2027 147 0 0 chr9 111353303 111353610 -6509017 + AluSx SINE Alu 1 307 -5 34 0 0 0 chr9 111353610 111353644 -6508983 + AT_rich Low_complexity Low_complexity 1 34 0 1291 221 64 18 chr9 111353676 111354065 -6508562 + L1MEc LINE L1 4799 5205 -1010 1682 197 0 7 chr9 111354065 111354201 -6508426 + AluJb SINE Alu 1 136 -176 1759 100 108 4 chr9 111354201 111354470 -6508157 + AluSq SINE Alu 1 297 -16 1682 197 0 7 chr9 111354470 111354632 -6507995 + AluJb SINE Alu 136 297 -15 2180 92 3 32 chr9 111354749 111355063 -6507564 + AluSx SINE Alu 1 305 -7 2569 30 0 3 chr9 111355071 111355372 -6507255 - AluY SINE Alu -11 300 1 439 226 28 0 chr9 111355372 111355492 -6507135 + L1MB2 LINE L1 5937 6066 -105 2174 97 3 0 chr9 111355568 111355858 -6506769 - AluSq SINE Alu -22 291 1 1839 123 4 7 chr9 111356234 111356511 -6506116 - AluJo SINE Alu -36 276 1 258 328 126 0 chr9 111356549 111356668 -6505959 - MIR SINE MIR -16 246 113 337 374 35 6 chr9 111356679 111356850 -6505777 - MIR SINE MIR -3 259 84 708 239 30 5 chr9 111357301 111357502 -6505125 + MLT1A1 LTR MaLR 157 362 -3 352 119 8 203 chr9 111357503 111357549 -6505078 + L1MB8 LINE L1 6075 6128 -50 1427 133 88 54 chr9 111357549 111357698 -6504929 - AluJb SINE Alu -8 304 162 2156 122 0 0 chr9 111357698 111358002 -6504625 - AluSg1 SINE Alu -5 304 1 1427 133 88 54 chr9 111358002 111358146 -6504481 - AluJb SINE Alu -150 162 1 352 119 8 203 chr9 111358146 111358158 -6504469 + L1MB8 LINE L1 6128 6141 -37 1987 117 31 10 chr9 111358158 111358449 -6504178 - AluSx SINE Alu -15 297 1 352 119 8 203 chr9 111358449 111358507 -6504120 + L1MB8 LINE L1 6141 6169 -9 219 258 44 13 chr9 111358800 111358893 -6503734 - MIR SINE MIR -74 134 38 2200 82 14 0 chr9 111359147 111359438 -6503189 + AluSq SINE Alu 1 295 -18 259 379 24 8 chr9 111359580 111359704 -6502923 + MIR SINE MIR 21 146 -116 2170 107 0 7 chr9 111359984 111360283 -6502344 - AluSg SINE Alu -13 297 1 576 0 0 0 chr9 111360858 111360922 -6501705 + (CA)n Simple_repeat Simple_repeat 2 65 0 566 311 12 6 chr9 111361467 111361628 -6500999 + MIR SINE MIR 46 207 -55 2294 107 3 0 chr9 111361693 111362001 -6500626 - AluSx SINE Alu -3 309 1 221 314 186 10 chr9 111362003 111362105 -6500522 - MIR SINE MIR -115 147 28 1993 124 7 13 chr9 111366545 111366680 -6495947 + AluSx SINE Alu 1 135 -177 1642 92 80 16 chr9 111366680 111366929 -6495698 + AluSg SINE Alu 35 299 -11 1993 124 7 13 chr9 111366929 111367092 -6495535 + AluSx SINE Alu 135 297 -15 400 109 0 0 chr9 111367102 111367157 -6495470 + AluSx SINE Alu 3 57 -255 2355 167 11 17 chr9 111367189 111367558 -6495069 + L1MB3 LINE L1 5688 6055 -128 2266 107 3 0 chr9 111367558 111367868 -6494759 + AluSq SINE Alu 1 311 -2 2355 167 11 17 chr9 111367868 111367965 -6494662 + L1MB3 LINE L1 6055 6151 -32 1895 105 0 0 chr9 111367975 111368233 -6494394 + AluSx SINE Alu 55 312 0 2182 98 3 3 chr9 111369327 111369624 -6493003 - AluSx SINE Alu -15 297 1 391 290 77 63 chr9 111369636 111369857 -6492770 - L1MEc LINE L1 -4172 2224 2001 1972 138 24 0 chr9 111369858 111370149 -6492478 - AluSq SINE Alu -15 298 1 1082 51 7 15 chr9 111370149 111370286 -6492341 - AluSq/x SINE Alu -177 136 1 297 259 12 0 chr9 111370296 111370377 -6492250 - MER45 DNA AcHobo -70 108 27 223 252 76 67 chr9 111370765 111370884 -6491743 + L2 LINE L2 2637 2756 -558 208 80 0 60 chr9 111371068 111371118 -6491509 + (TCC)n Simple_repeat Simple_repeat 2 48 0 202 331 28 101 chr9 111371118 111371435 -6491192 + L2 LINE L2 2966 3259 -13 227 256 128 13 chr9 111371672 111371750 -6490877 - MIR SINE MIR -120 142 56 256 226 146 0 chr9 111371776 111371851 -6490776 - AluJ/FLAM SINE Alu -230 72 1 1378 167 0 51 chr9 111371873 111372148 -6490479 + AluJo SINE Alu 36 296 -16 2504 45 0 23 chr9 111372364 111372673 -6489954 + AluY SINE Alu 1 302 -9 2148 62 31 7 chr9 111373219 111373509 -6489118 + AluY SINE Alu 1 297 -14 717 111 14 14 chr9 111373518 111373725 -6488902 + AluSq SINE Alu 1 306 -7 308 328 125 44 chr9 111373810 111374084 -6488543 - L1MC4a LINE L1 -1826 5982 5681 2200 106 7 0 chr9 111374084 111374377 -6488250 - AluSx SINE Alu -17 295 1 308 328 125 44 chr9 111374377 111374398 -6488229 - L1MC4a LINE L1 -2127 5681 5663 1991 113 0 36 chr9 111374513 111374815 -6487812 + AluSq SINE Alu 1 291 -22 1413 142 0 18 chr9 111375600 111375825 -6486802 - AluJb SINE Alu -6 306 86 353 297 186 0 chr9 111375998 111376143 -6486484 - MIR SINE MIR -2 260 89 681 215 11 42 chr9 111376901 111377092 -6485535 + MER20 DNA MER1_type 1 185 -34 2119 110 0 7 chr9 111377262 111377562 -6485065 + AluSx SINE Alu 14 311 -1 500 306 14 0 chr9 111378410 111378557 -6484070 - MIR SINE MIR -66 196 48 23 0 0 0 chr9 111381606 111381629 -6480998 + GC_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr9 111381696 111381722 -6480905 + GC_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr9 111382275 111382303 -6480324 + GC_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr9 111382326 111382347 -6480280 + GC_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chr9 111382431 111382471 -6480156 + GC_rich Low_complexity Low_complexity 1 40 0 40 87 0 0 chr9 111382526 111382629 -6479998 + GC_rich Low_complexity Low_complexity 1 103 0 180 0 0 0 chr9 111382642 111382662 -6479965 + (CGG)n Simple_repeat Simple_repeat 2 21 0 217 301 75 23 chr9 111383107 111383240 -6479387 - MIR SINE MIR -36 226 87 208 305 37 49 chr9 111383842 111383924 -6478703 + L2 LINE L2 3009 3089 -224 234 237 10 74 chr9 111385446 111385542 -6477085 - MIR SINE MIR -18 190 108 202 275 43 0 chr9 111386067 111386136 -6476491 - MIR3 SINE MIR -29 179 108 326 304 30 6 chr9 111386799 111386967 -6475660 + (TG)n Simple_repeat Simple_repeat 1 172 0 429 284 17 0 chr9 111387002 111387178 -6475449 + (TG)n Simple_repeat Simple_repeat 1 179 0 21 36 0 0 chr9 111387616 111387644 -6474983 + GC_rich Low_complexity Low_complexity 1 28 0 26 30 0 0 chr9 111387651 111387684 -6474943 + GC_rich Low_complexity Low_complexity 1 33 0 319 273 53 72 chr9 111388087 111388268 -6474359 - L2 LINE L2 -32 3281 3103 2135 123 0 3 chr9 111388268 111388570 -6474057 + AluSx SINE Alu 1 301 -11 319 273 53 72 chr9 111388570 111388597 -6474030 - L2 LINE L2 -210 3103 3077 1989 152 0 0 chr9 111389198 111389494 -6473133 + AluJb SINE Alu 1 296 -16 191 122 0 49 chr9 111389501 111389542 -6473085 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 428 274 13 46 chr9 111389586 111389739 -6472888 + MIR3 SINE MIR 9 156 -52 2111 95 36 13 chr9 111389879 111390185 -6472442 - AluSq SINE Alu 0 313 1 2226 95 3 0 chr9 111390185 111390479 -6472148 - AluSq SINE Alu -18 295 1 456 261 99 36 chr9 111390508 111390761 -6471866 + L1ME4a LINE L1 5673 5941 -180 1972 146 3 7 chr9 111390766 111391067 -6471560 + AluSx SINE Alu 1 300 -12 291 54 0 0 chr9 111391446 111391483 -6471144 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 958 111 0 15 chr9 111391545 111391680 -6470947 + FLAM_C SINE Alu 1 133 0 301 287 127 26 chr9 111391888 111392046 -6470581 - MIR SINE MIR -22 186 13 274 287 81 22 chr9 111392357 111392493 -6470134 + MIR SINE MIR 103 246 -16 599 341 51 0 chr9 111392898 111393115 -6469512 - MIR SINE MIR -25 237 10 180 288 30 30 chr9 111393107 111393173 -6469454 - L3 LINE CR1 -125 1452 1387 * 2240 78 6 75 chr9 111396146 111396481 -6466146 - AluSx SINE Alu 0 312 1 386 296 11 34 chr9 111396500 111396694 -6465933 - MIR SINE MIR -48 214 25 560 271 89 35 chr9 111396967 111397170 -6465457 - MIR SINE MIR -12 250 37 549 247 49 32 chr9 111397582 111397826 -6464801 - MIR SINE MIR -2 260 14 398 267 23 38 chr9 111398237 111398368 -6464259 + MIR SINE MIR 22 152 -56 464 246 103 8 chr9 111398768 111398894 -6463733 + MIR SINE MIR 7 144 -118 180 176 0 0 chr9 111398973 111399007 -6463620 + (CAT)n Simple_repeat Simple_repeat 2 35 0 316 0 0 0 chr9 111399251 111399286 -6463341 + (TTTG)n Simple_repeat Simple_repeat 2 172 0 802 226 128 23 chr9 111399286 111399543 -6463084 - AluSx SINE Alu -1 318 1 534 118 0 0 chr9 111399553 111399629 -6462998 - AluSc SINE Alu -13 296 221 294 194 0 0 chr9 111399685 111399747 -6462880 + LTR5 LTR ERVK 908 969 0 1270 207 14 4 chr9 111399949 111400224 -6462403 - L1M4 LINE L1 -404 5770 5493 737 178 0 103 chr9 111400224 111400409 -6462218 - MER87 LTR ERV1 -312 229 64 1282 114 0 0 chr9 111400517 111400683 -6461944 + AluSg/x SINE Alu 134 299 -13 2236 142 0 0 chr9 111400714 111401024 -6461603 + AluSx SINE Alu 2 311 -1 412 271 49 0 chr9 111401426 111401548 -6461079 - MER20B DNA MER1_type -613 170 43 212 240 20 0 chr9 111401808 111401858 -6460769 + L2 LINE L2 3262 3312 -1 2384 70 7 0 chr9 111402002 111402288 -6460339 - AluY SINE Alu -23 288 1 1064 141 0 0 chr9 111402570 111402726 -6459901 - AluSg/x SINE Alu -2 310 155 350 224 0 0 chr9 111402833 111402909 -6459718 - MADE1 DNA Mariner -4 76 1 2285 94 0 7 chr9 111402914 111403212 -6459415 - AluSq SINE Alu -17 296 1 1860 164 14 14 chr9 111403346 111403639 -6458988 - AluSx SINE Alu -19 293 1 2208 118 0 7 chr9 111403648 111403954 -6458673 - AluSx SINE Alu -8 304 1 287 241 185 28 chr9 111404069 111404177 -6458450 + MIR SINE MIR 8 132 -130 2255 95 0 11 chr9 111404177 111404485 -6458142 - AluSg SINE Alu 0 305 1 1903 120 55 0 chr9 111404488 111404763 -6457864 - AluSx SINE Alu -5 307 18 1075 149 36 22 chr9 111404797 111405019 -6457608 - L1MB3 LINE L1 -199 5984 5760 2098 137 3 13 chr9 111405865 111406179 -6456448 - AluSx SINE Alu -1 311 1 24 32 0 0 chr9 111406184 111406215 -6456412 + AT_rich Low_complexity Low_complexity 1 31 0 771 171 0 50 chr9 111406465 111406605 -6456022 - FLAM_C SINE Alu 0 133 1 2156 121 20 7 chr9 111406741 111407046 -6455581 - AluSq SINE Alu -4 309 1 265 217 94 28 chr9 111407274 111407380 -6455247 - L1MB3 LINE L1 -1989 5819 5707 520 306 73 23 chr9 111408374 111408593 -6454034 + MIR SINE MIR 31 260 -2 279 292 32 84 chr9 111408999 111409188 -6453439 + MIR SINE MIR 3 185 -72 297 216 59 39 chr9 111410333 111410435 -6452192 + MIR SINE MIR 81 184 -78 268 286 0 0 chr9 111410922 111411006 -6451621 + L1MC/D LINE L1 5754 5837 -1971 2304 104 3 3 chr9 111411244 111411541 -6451086 - AluSp SINE Alu -16 297 1 2406 91 3 0 chr9 111411543 111411839 -6450788 - AluSp SINE Alu -11 302 6 1274 77 0 30 chr9 111411839 111412007 -6450620 - AluSq SINE Alu -150 163 1 296 286 48 71 chr9 111413055 111413181 -6449446 + MIR SINE MIR 32 154 -108 2005 92 0 4 chr9 111413516 111413777 -6448850 + AluSx SINE Alu 21 280 -32 561 261 152 68 chr9 111416224 111416992 -6445635 + HAL1 LINE L1 103 996 -1511 379 201 108 65 chr9 111417150 111417289 -6445338 + HAL1 LINE L1 873 1017 -1490 1774 164 104 5 chr9 111417358 111417742 -6444885 + L1MC3 LINE L1 7348 7769 -16 2347 101 3 3 chr9 111417767 111418073 -6444554 + AluSg SINE Alu 1 306 -4 695 253 81 55 chr9 111418151 111418609 -6444018 + HAL1 LINE L1 1192 1661 -846 2010 117 3 10 chr9 111418891 111419181 -6443446 + AluSx SINE Alu 13 300 -12 324 285 70 89 chr9 111419223 111419304 -6443323 + HAL1 LINE L1 1749 1827 -680 2237 112 3 3 chr9 111419304 111419600 -6443027 + AluSx SINE Alu 1 296 -16 324 285 70 89 chr9 111419600 111419676 -6442951 + HAL1 LINE L1 1827 1903 -604 881 284 111 11 chr9 111419727 111420203 -6442424 - L1M4 LINE L1 -947 5199 4676 2261 92 7 3 chr9 111420204 111420499 -6442128 + AluSq SINE Alu 1 296 -17 1704 165 43 16 chr9 111420509 111420658 -6441969 + AluJo SINE Alu 1 145 -167 4653 61 22 0 chr9 111420658 111421236 -6441391 - LTR10C LTR ERV1 0 591 1 1704 165 43 16 chr9 111421236 111421389 -6441238 + AluJo SINE Alu 145 311 -1 442 217 0 118 chr9 111421389 111421550 -6441077 - L1M4 LINE L1 -1460 4686 4545 231 151 19 19 chr9 111421624 111421677 -6440950 + L1ME LINE L1 5604 5656 -506 195 42 0 0 chr9 111421682 111421706 -6440921 + (CACG)n Simple_repeat Simple_repeat 4 27 0 824 254 5 33 chr9 111421952 111422165 -6440462 + AluSg/x SINE Alu 105 311 -1 412 271 49 0 chr9 111422567 111422689 -6439938 - MER20B DNA MER1_type -613 170 43 212 240 20 0 chr9 111422949 111422999 -6439628 + L2 LINE L2 3262 3312 -1 2449 59 7 0 chr9 111423142 111423428 -6439199 - AluY SINE Alu -23 288 1 315 0 0 0 chr9 111423443 111423478 -6439149 + (TGAG)n Simple_repeat Simple_repeat 1 35 0 210 143 0 0 chr9 111424224 111424259 -6438368 + (T)n Simple_repeat Simple_repeat 1 35 0 238 193 0 0 chr9 111424675 111424732 -6437895 + (TA)n Simple_repeat Simple_repeat 2 58 0 399 89 0 0 chr9 111424733 111424789 -6437838 + (TG)n Simple_repeat Simple_repeat 2 57 0 2193 119 0 0 chr9 111424789 111425075 -6437552 - AluSx SINE Alu -26 286 1 2392 89 0 13 chr9 111425135 111425301 -6437326 - AluSp SINE Alu -15 298 136 2429 97 0 0 chr9 111425301 111425612 -6437015 - AluY SINE Alu 0 311 1 2392 89 0 13 chr9 111425612 111425747 -6436880 - AluSp SINE Alu -177 136 1 2530 53 0 13 chr9 111425768 111426068 -6436559 - AluY SINE Alu -15 296 1 33 25 0 0 chr9 111426078 111426118 -6436509 + AT_rich Low_complexity Low_complexity 1 40 0 1029 129 0 0 chr9 111426135 111426274 -6436353 - AluJo SINE Alu -171 141 3 391 345 61 39 chr9 111428144 111428373 -6434254 + MIR SINE MIR 23 256 -6 249 287 74 57 chr9 111429037 111429159 -6433468 + L1ME4a LINE L1 5541 5664 -2144 2382 105 0 0 chr9 111429197 111429502 -6433125 + AluSx SINE Alu 1 305 -7 2211 124 3 10 chr9 111429514 111429828 -6432799 + AluSx SINE Alu 1 312 0 442 286 130 59 chr9 111429870 111430209 -6432418 + L1ME4a LINE L1 5755 6117 -4 909 196 0 12 chr9 111430399 111430567 -6432060 + AluJb SINE Alu 137 302 -10 483 270 8 0 chr9 111431317 111431443 -6431184 + MER103 DNA DNA 38 164 -2 189 184 223 78 chr9 111432423 111432526 -6430101 + MIR3 SINE MIR 8 125 -83 210 273 164 36 chr9 111432847 111432957 -6429670 + MIR SINE MIR 21 107 -101 850 191 0 0 chr9 111433958 111434094 -6428533 - AluJb SINE Alu -57 255 120 587 121 33 0 chr9 111434273 111434364 -6428263 - AluSg/x SINE Alu -4 306 213 29 47 0 0 chr9 111434374 111434417 -6428210 + AT_rich Low_complexity Low_complexity 1 43 0 827 265 137 12 chr9 111434447 111434790 -6427837 + L1MC4a LINE L1 5545 5930 -1878 1810 165 0 7 chr9 111434806 111435091 -6427536 + AluJb SINE Alu 19 301 -11 230 250 139 0 chr9 111435220 111435328 -6427299 + L1MC4a LINE L1 6044 6166 -1642 720 217 0 21 chr9 111435381 111435524 -6427103 + FLAM_A SINE Alu 2 141 -1 1464 170 0 0 chr9 111436089 111436318 -6426309 - AluJb SINE Alu 0 312 84 2357 63 0 11 chr9 111437067 111437404 -6425223 - AluY SINE Alu 0 334 1 2017 127 17 7 chr9 111437406 111437698 -6424929 - AluJb SINE Alu -16 296 2 193 289 10 96 chr9 111438631 111438735 -6423892 + MER5B DNA MER1_type 6 100 -78 2423 82 7 0 chr9 111439122 111439428 -6423199 - AluSp SINE Alu -5 308 1 381 276 40 40 chr9 111439503 111439655 -6422972 - MIR3 SINE MIR -15 193 42 362 115 0 0 chr9 111442163 111442215 -6420412 + MER66B LTR ERV1 295 346 -140 2348 96 17 3 chr9 111442238 111442540 -6420087 + AluSc SINE Alu 1 306 -3 589 221 96 0 chr9 111442543 111442679 -6419948 - FAM SINE Alu -26 159 11 614 235 107 50 chr9 111442779 111443299 -6419328 - L1ME2 LINE L1 -20 6078 5457 549 126 0 35 chr9 111443331 111443418 -6419209 - FRAM SINE Alu -17 159 76 611 208 0 0 chr9 111443419 111443568 -6419059 - L1ME2 LINE L1 -674 5422 5274 3126 229 125 56 chr9 111443603 111444237 -6418390 - L1ME2 LINE L1 -884 5196 4607 2342 99 3 0 chr9 111444237 111444530 -6418097 - AluSg SINE Alu -12 298 5 3126 229 125 56 chr9 111444530 111444563 -6418064 - L1ME2 LINE L1 -1473 4607 4578 2122 143 0 0 chr9 111444563 111444857 -6417770 - AluSx SINE Alu -18 294 1 3126 229 125 56 chr9 111444857 111445088 -6417539 - L1ME2 LINE L1 -1502 4578 4364 2338 88 3 0 chr9 111445088 111445383 -6417244 + AluY SINE Alu 1 296 -15 3126 229 125 56 chr9 111445383 111446063 -6416564 - L1ME2 LINE L1 -1716 4364 3507 921 175 11 23 chr9 111446113 111446290 -6416337 - FRAM SINE Alu -8 168 1 773 255 58 16 chr9 111446292 111446672 -6415955 - L1ME2 LINE L1 -2600 3480 3085 524 249 16 51 chr9 111446725 111446978 -6415649 - L1ME2 LINE L1 -3326 2754 2511 1193 179 28 4 chr9 111447193 111447444 -6415183 - L1MB7 LINE L1 -185 5999 5743 323 278 33 13 chr9 111447514 111447672 -6414955 - L1ME2 LINE L1 -5900 170 10 2461 81 0 0 chr9 111447790 111448085 -6414542 - AluSg SINE Alu -5 305 11 710 124 0 0 chr9 111448085 111448182 -6414445 - AluSg SINE Alu -212 98 2 371 204 43 93 chr9 111448632 111448669 -6413958 + MER103 DNA DNA 8 45 -121 1500 177 11 8 chr9 111448669 111448935 -6413692 - AluJb SINE Alu -3 309 43 371 204 43 93 chr9 111448935 111448992 -6413635 + MER103 DNA DNA 45 93 -73 2282 125 0 0 chr9 111448992 111449295 -6413332 + AluSx SINE Alu 1 303 -9 371 204 43 93 chr9 111449295 111449361 -6413266 + MER103 DNA DNA 93 161 -5 343 209 15 0 chr9 111449523 111449590 -6413037 + L1ME3A LINE L1 5835 5902 -268 1455 192 48 24 chr9 111449769 111450061 -6412566 + AluJo SINE Alu 1 299 -13 2411 62 10 0 chr9 111450233 111450537 -6412090 + AluY SINE Alu 1 307 -4 1655 127 124 4 chr9 111450540 111450815 -6411812 + AluSx SINE Alu 1 308 -4 1227 113 82 0 chr9 111450820 111451015 -6411612 + L1MB3 LINE L1 5966 6176 -7 1001 88 0 0 chr9 111451103 111451239 -6411388 + AluSp/q SINE Alu 175 310 -3 1710 153 0 61 chr9 111451480 111451575 -6411052 + AluJb SINE Alu 2 101 -211 2166 117 3 0 chr9 111451575 111451884 -6410743 + AluSx SINE Alu 3 312 0 1710 153 0 61 chr9 111451884 111452114 -6410513 + AluJb SINE Alu 101 307 -5 480 260 100 48 chr9 111452200 111452431 -6410196 + L1ME4a LINE L1 5613 5855 -266 2327 87 0 0 chr9 111452582 111452891 -6409736 - AluY SINE Alu 0 311 3 2223 102 0 3 chr9 111452893 111453197 -6409430 - AluSx SINE Alu -9 303 1 1635 159 24 21 chr9 111453200 111453490 -6409137 - AluJb SINE Alu -17 295 5 258 288 0 0 chr9 111453504 111453570 -6409057 + L2 LINE L2 3242 3307 -6 189 0 0 0 chr9 111454606 111454627 -6408000 + (A)n Simple_repeat Simple_repeat 1 21 0 330 299 158 5 chr9 111455395 111455579 -6407048 - MIR SINE MIR -19 243 32 1938 115 7 24 chr9 111455699 111455994 -6406633 - AluSx SINE Alu 0 312 23 27 0 0 0 chr9 111456197 111456224 -6406403 + AT_rich Low_complexity Low_complexity 1 27 0 2170 115 0 0 chr9 111456254 111456558 -6406069 + AluSg SINE Alu 6 309 -1 2185 93 0 0 chr9 111456605 111456896 -6405731 + AluSx SINE Alu 1 291 -21 435 293 67 18 chr9 111456928 111457058 -6405569 - MIR SINE MIR -14 248 107 1852 186 145 16 chr9 111457058 111457505 -6405122 + MLT1D LTR MaLR 1 505 0 435 293 67 18 chr9 111457505 111457538 -6405089 - MIR SINE MIR -155 107 77 2195 113 0 0 chr9 111457561 111457863 -6404764 + AluSg SINE Alu 1 302 -8 2457 66 0 0 chr9 111457867 111458170 -6404457 + AluY SINE Alu 5 307 -4 221 310 0 0 chr9 111458331 111458402 -6404225 - L2 LINE L2 -18 3254 3184 1975 96 29 0 chr9 111458434 111458714 -6403913 + AluSg SINE Alu 1 288 -22 2109 106 0 0 chr9 111458751 111459043 -6403584 - AluSg SINE Alu -18 292 1 4089 184 15 11 chr9 111459066 111459818 -6402809 - L1MB3 LINE L1 -2 6181 5427 1874 131 38 0 chr9 111459854 111460145 -6402482 - AluSx SINE Alu -10 302 1 2112 117 3 0 chr9 111460976 111461276 -6401351 - AluSx SINE Alu -11 301 1 996 314 44 35 chr9 111461305 111461878 -6400749 - L1ME4a LINE L1 -18 6103 5526 233 224 0 17 chr9 111461860 111461918 -6400709 - HAL1 LINE L1 -1864 643 587 * 1037 217 121 14 chr9 111463614 111463895 -6398732 - MSTD LTR MaLR -1 395 85 1892 151 10 6 chr9 111463997 111464308 -6398319 + AluJo SINE Alu 1 312 0 1986 116 0 0 chr9 111464546 111464858 -6397769 - AluSx SINE Alu 0 318 7 2448 62 0 7 chr9 111465403 111465711 -6396916 - AluSx SINE Alu -6 306 1 2439 75 0 0 chr9 111466642 111466948 -6395679 + AluSp SINE Alu 1 306 -7 350 222 121 0 chr9 111467244 111467343 -6395284 - MER81 DNA DNA -2 112 2 284 373 118 0 chr9 111467382 111467535 -6395092 - MIR SINE MIR -91 171 1 2068 134 0 6 chr9 111467943 111468257 -6394370 + AluSx SINE Alu 1 312 0 921 197 43 21 chr9 111468626 111468860 -6393767 + L1MB5 LINE L1 5540 5778 -402 1415 200 7 18 chr9 111468860 111469145 -6393482 + AluJo SINE Alu 1 282 -30 675 146 0 10 chr9 111469198 111469301 -6393326 - AluJb SINE Alu -125 187 86 1317 183 5 0 chr9 111469301 111469520 -6393107 - AluJo SINE Alu -92 220 1 2379 73 0 0 chr9 111469549 111469851 -6392776 + AluY SINE Alu 3 304 -7 2188 122 0 0 chr9 111469851 111470163 -6392464 + AluSx SINE Alu 1 312 0 2013 167 47 10 chr9 111470165 111470548 -6392079 + L1MB5 LINE L1 5778 6174 0 1957 140 0 10 chr9 111470557 111470865 -6391762 + AluSx SINE Alu 1 305 -7 2199 105 3 10 chr9 111470866 111471180 -6391447 + AluSq SINE Alu 1 312 -1 299 288 299 7 chr9 111471180 111471451 -6391176 - L2 LINE L2 -151 3162 2813 575 284 12 0 chr9 111472399 111472561 -6390066 - MER103 DNA DNA -1 165 2 193 289 78 28 chr9 111473283 111473463 -6389164 - L2 LINE L2 -171 3101 2913 225 227 0 0 chr9 111473486 111473530 -6389097 - Charlie1 DNA MER1_type -2709 52 9 315 259 128 8 chr9 111473549 111473669 -6388958 - MIR SINE MIR -63 145 49 879 243 7 90 chr9 111473670 111473842 -6388785 - MLT1C LTR MaLR -202 265 125 2322 88 0 7 chr9 111473842 111474150 -6388477 - AluSq SINE Alu -7 306 1 879 243 7 90 chr9 111474150 111474265 -6388362 - MLT1C LTR MaLR -342 125 2 1995 109 3 11 chr9 111475127 111475412 -6387215 + AluSx SINE Alu 1 283 -29 445 119 0 0 chr9 111475513 111475580 -6387047 + Alu SINE Alu 242 308 -3 1438 148 57 15 chr9 111475585 111475723 -6386904 - AluJo SINE Alu -36 276 145 2004 113 16 23 chr9 111475723 111476032 -6386595 - AluSx SINE Alu -5 307 1 1438 148 57 15 chr9 111476032 111476156 -6386471 - AluJo SINE Alu -167 145 3 348 345 41 6 chr9 111476182 111476353 -6386274 - L1M4 LINE L1 -2281 3865 3689 470 246 0 8 chr9 111476609 111476727 -6385900 - MIR SINE MIR -113 149 33 1450 145 123 7 chr9 111477470 111477645 -6384982 - AluY SINE Alu -3 308 155 1507 84 0 5 chr9 111477645 111477848 -6384779 - AluY SINE Alu -16 295 94 2674 10 0 0 chr9 111477848 111478144 -6384483 - AluYa5 SINE Alu -13 298 1 1450 145 123 7 chr9 111478144 111478243 -6384384 - AluY SINE Alu -155 156 1 926 117 0 0 chr9 111478247 111478375 -6384252 - AluSq/x SINE Alu -179 133 6 2042 126 7 0 chr9 111478385 111478687 -6383940 - AluSx SINE Alu -8 304 1 278 271 243 9 chr9 111478960 111479067 -6383560 + MIR SINE MIR 20 151 -111 190 35 103 0 chr9 111479877 111479906 -6382721 + MIR SINE MIR 112 143 -65 1261 194 24 38 chr9 111479948 111480086 -6382541 + MLT1A1 LTR MaLR 16 154 -211 1907 139 0 7 chr9 111480086 111480380 -6382247 + AluSx SINE Alu 2 293 -19 1261 194 24 38 chr9 111480380 111480529 -6382098 + MLT1A1 LTR MaLR 154 299 -66 2277 109 0 0 chr9 111480529 111480841 -6381786 - AluSx SINE Alu 0 312 1 814 176 0 0 chr9 111480853 111480978 -6381649 - FLAM_C SINE Alu -17 126 2 1669 94 91 97 chr9 111480988 111481297 -6381330 - AluSx SINE Alu -5 307 1 695 164 112 0 chr9 111481638 111481754 -6380873 + FLAM_C SINE Alu 3 131 -12 206 246 101 0 chr9 111482340 111482409 -6380218 + MIR3 SINE MIR 117 192 -16 2211 86 0 3 chr9 111482760 111483052 -6379575 - AluSx SINE Alu -21 291 1 302 198 83 21 chr9 111483153 111483249 -6379378 - MER53 DNA DNA -65 124 23 * 310 207 98 0 chr9 111483178 111483260 -6379367 + MER53 DNA DNA 99 188 -1 2209 97 3 0 chr9 111483523 111483823 -6378804 + AluSq SINE Alu 1 301 -12 2305 44 17 10 chr9 111484386 111484683 -6377944 + AluY SINE Alu 1 299 -12 318 327 64 19 chr9 111484712 111484868 -6377759 - L1ME4a LINE L1 -123 5998 5836 2073 118 0 7 chr9 111484874 111485179 -6377448 + AluSx SINE Alu 1 303 -9 1744 164 14 14 chr9 111485188 111485481 -6377146 + AluSx SINE Alu 1 293 -19 2160 97 0 7 chr9 111485615 111485914 -6376713 + AluSq SINE Alu 1 297 -16 566 105 0 0 chr9 111485919 111485995 -6376632 + MADE1 DNA Mariner 1 76 -4 2072 110 20 0 chr9 111486011 111486312 -6376315 - AluSx SINE Alu -5 307 1 2943 174 80 10 chr9 111486313 111486923 -6375704 - L1MB5 LINE L1 -34 6140 5488 2342 86 0 0 chr9 111486926 111487228 -6375399 - AluSq SINE Alu -11 302 1 1550 164 3 62 chr9 111487229 111487553 -6375074 + MLT1B LTR MaLR 82 386 -4 479 252 16 16 chr9 111487780 111487903 -6374724 - MER5B DNA MER1_type -51 127 5 2400 63 0 3 chr9 111487911 111488214 -6374413 + AluY SINE Alu 1 302 -9 600 229 0 0 chr9 111488224 111488333 -6374294 + AluJo SINE Alu 2 110 -202 1303 156 5 0 chr9 111488381 111488592 -6374035 + AluJo SINE Alu 85 296 -16 360 271 33 16 chr9 111489206 111489328 -6373299 + MIR3 SINE MIR 36 159 -49 242 256 77 0 chr9 111489354 111489432 -6373195 + MLT1K LTR MaLR 485 568 -20 2276 40 43 0 chr9 111489851 111490127 -6372500 + AluY SINE Alu 13 300 -11 829 169 0 27 chr9 111490127 111490268 -6372359 - AluJo/FRAM SINE Alu -6 306 168 344 291 168 19 chr9 111490270 111490350 -6372277 - L1M4 LINE L1 -1559 4587 4520 1648 82 0 9 chr9 111490350 111490569 -6372058 + AluSg1 SINE Alu 1 217 -92 344 291 168 19 chr9 111490569 111490756 -6371871 - L1M4 LINE L1 -1626 4520 4280 283 253 55 55 chr9 111490867 111490958 -6371669 - L1P LINE L1 -2014 4132 4042 * 296 343 7 7 chr9 111490956 111491093 -6371534 - L1M4 LINE L1 -2166 3980 3844 1698 159 3 26 chr9 111491094 111491403 -6371224 - AluJo SINE Alu -10 302 1 396 0 0 0 chr9 111491494 111491538 -6371089 + (TAGA)n Simple_repeat Simple_repeat 4 47 0 741 183 8 0 chr9 111491538 111491658 -6370969 + AluJb SINE Alu 2 122 -190 638 194 147 0 chr9 111491793 111491922 -6370705 - AluJb SINE Alu -31 281 134 1876 154 6 10 chr9 111491922 111492234 -6370393 - AluJb SINE Alu -1 311 1 1800 168 7 0 chr9 111492236 111492534 -6370093 - AluJb SINE Alu -12 300 1 1073 143 0 0 chr9 111492536 111492697 -6369930 - AluJb SINE Alu -12 300 140 608 317 25 5 chr9 111493547 111493749 -6368878 + MIR SINE MIR 20 225 -37 1690 166 34 3 chr9 111493752 111494047 -6368580 - AluJb SINE Alu -8 304 1 273 151 0 0 chr9 111494070 111494123 -6368504 + (TG)n Simple_repeat Simple_repeat 1 53 0 180 295 0 33 chr9 111494222 111494283 -6368344 - MIR SINE MIR -69 139 81 2275 59 3 11 chr9 111494393 111494679 -6367948 + AluSc SINE Alu 12 295 -14 2255 89 3 0 chr9 111495364 111495655 -6366972 + AluSx SINE Alu 1 292 -20 312 48 0 0 chr9 111495804 111495846 -6366781 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 1798 139 14 11 chr9 111495848 111496128 -6366499 - AluJb SINE Alu -31 281 1 456 314 93 42 chr9 111496192 111496328 -6366299 + MIR SINE MIR 3 157 -105 2167 79 34 0 chr9 111496328 111496619 -6366008 + AluSq SINE Alu 1 301 -12 456 314 93 42 chr9 111496619 111496718 -6365909 + MIR SINE MIR 157 250 -12 1893 161 0 0 chr9 111496718 111497017 -6365610 - AluSx SINE Alu -12 300 2 1930 99 6 102 chr9 111497049 111497392 -6365235 - AluY SINE Alu -1 310 1 642 159 0 0 chr9 111497423 111497536 -6365091 + FLAM_C SINE Alu 29 141 -2 2010 109 44 0 chr9 111498090 111498384 -6364243 + AluSx SINE Alu 1 307 -5 261 0 0 0 chr9 111499077 111499092 -6363535 + (TTTTC)n Simple_repeat Simple_repeat 1 44 0 261 0 0 0 chr9 111499092 111499121 -6363506 + (TTTTC)n Simple_repeat Simple_repeat 5 33 0 1812 146 3 20 chr9 111499139 111499447 -6363180 - AluJo SINE Alu -21 291 1 2577 54 0 19 chr9 111499478 111499792 -6362835 - AluY SINE Alu -3 308 1 1272 109 127 27 chr9 111499792 111500002 -6362625 - AluSg/x SINE Alu -7 303 69 331 263 83 15 chr9 111500828 111500961 -6361666 + MIR3 SINE MIR 17 158 -50 236 250 0 0 chr9 111501188 111501244 -6361383 - L1MC4 LINE L1 -1259 6783 6728 814 153 82 6 chr9 111501244 111501414 -6361213 + MLT1C LTR MaLR 1 183 -284 1714 143 43 14 chr9 111501416 111501695 -6360932 + AluJo SINE Alu 1 287 -25 2316 132 0 0 chr9 111501720 111502031 -6360596 + AluSx SINE Alu 1 311 -1 2232 100 24 0 chr9 111502100 111502391 -6360236 + AluSx SINE Alu 1 298 -14 477 300 12 6 chr9 111502537 111502697 -6359930 + MLT1C LTR MaLR 302 462 -5 203 171 0 0 chr9 111502762 111502803 -6359824 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 38695 71 9 8 chr9 111502806 111505691 -6356936 - L1PA6 LINE L1 0 6154 3272 2651 50 0 28 chr9 111505691 111506011 -6356616 - AluY SINE Alu 0 311 1 38695 71 9 8 chr9 111506011 111509268 -6353359 - L1PA6 LINE L1 -2882 3272 11 2347 101 0 0 chr9 111509276 111509573 -6353054 - AluSc SINE Alu -12 297 1 1873 134 11 7 chr9 111509701 111509978 -6352649 - AluJo SINE Alu -22 290 13 2096 112 4 0 chr9 111510078 111510356 -6352271 + AluSp SINE Alu 31 309 -4 609 306 168 3 chr9 111510387 111510684 -6351943 + L2 LINE L2 2968 3313 0 2215 127 0 0 chr9 111510688 111510980 -6351647 + AluSx SINE Alu 3 294 -18 2408 76 0 16 chr9 111511789 111512092 -6350535 + AluY SINE Alu 1 298 -13 1354 109 0 0 chr9 111512093 111512267 -6350360 + AluSg/x SINE Alu 134 307 -5 1834 158 0 32 chr9 111512893 111513204 -6349423 + AluJo SINE Alu 1 301 -11 362 299 42 78 chr9 111513722 111514057 -6348570 - L2 LINE L2 -60 3212 2890 277 24 48 0 chr9 111514352 111514394 -6348233 + (TTTG)n Simple_repeat Simple_repeat 4 47 0 2309 38 0 48 chr9 111514394 111514687 -6347940 - AluY SINE Alu -32 279 1 936 149 6 42 chr9 111514964 111515132 -6347495 + FRAM SINE Alu 1 162 -14 560 146 95 80 chr9 111515142 111515279 -6347348 + FLAM_C SINE Alu 2 140 -3 1120 214 143 91 chr9 111515280 111515486 -6347141 - Tigger3b DNA MER2_type -2262 766 572 2364 114 0 0 chr9 111515486 111515794 -6346833 - AluSc SINE Alu -1 308 1 1120 214 143 91 chr9 111515794 111516105 -6346522 - Tigger3b DNA MER2_type -2456 572 279 1899 141 14 7 chr9 111516105 111516396 -6346231 + AluJb SINE Alu 5 297 -15 2259 119 0 7 chr9 111516396 111516699 -6345928 + AluSx SINE Alu 1 301 -11 1120 214 143 91 chr9 111516699 111516897 -6345730 - Tigger3b DNA MER2_type -2748 280 11 1535 196 52 35 chr9 111516900 111517247 -6345380 - L1M3 LINE L1 -396 5784 5432 802 138 0 0 chr9 111517247 111517363 -6345264 - AluJb SINE Alu -17 295 180 2311 101 0 0 chr9 111517391 111517677 -6344950 + AluSx SINE Alu 20 305 -7 2281 96 3 3 chr9 111517677 111517969 -6344658 + AluSc SINE Alu 1 292 -17 2217 192 26 78 chr9 111517969 111518172 -6344455 - L1M3 LINE L1 -855 5291 5079 2491 65 7 10 chr9 111518172 111518479 -6344148 + AluY SINE Alu 1 306 -5 2217 192 26 78 chr9 111518479 111518541 -6344086 - L1M3 LINE L1 -1067 5079 5015 2234 112 3 0 chr9 111518541 111518836 -6343791 - AluSx SINE Alu -14 298 3 2217 192 26 78 chr9 111518836 111519251 -6343376 - L1M3 LINE L1 -1131 5015 4645 415 188 0 0 chr9 111519279 111519348 -6343279 - AluS SINE Alu -241 70 2 1641 129 86 0 chr9 111519413 111519645 -6342982 + AluSq SINE Alu 1 252 -61 2178 97 36 0 chr9 111519671 111519950 -6342677 + AluSg SINE Alu 1 289 -21 2314 126 3 0 chr9 111519950 111520260 -6342367 + AluSq SINE Alu 1 311 -2 730 204 27 0 chr9 111520261 111520408 -6342219 - L1M3 LINE L1 -1921 4225 4075 8371 52 11 0 chr9 111520472 111521430 -6341197 + LTR5 LTR ERVK 1 969 0 755 204 0 94 chr9 111521653 111521854 -6340773 + MER87 LTR ERV1 58 239 -302 1680 234 79 54 chr9 111521913 111522004 -6340623 - LTR9 LTR ERV1 0 612 525 2387 85 13 3 chr9 111522004 111522310 -6340317 + AluSx SINE Alu 1 309 -3 1680 234 79 54 chr9 111522310 111522815 -6339812 - LTR9 LTR ERV1 -87 525 1 1609 146 0 16 chr9 111522815 111522899 -6339728 + AluJo SINE Alu 52 136 -176 2400 86 3 3 chr9 111522899 111523203 -6339424 + AluY SINE Alu 2 305 -6 1609 146 0 16 chr9 111523203 111523364 -6339263 + AluJo SINE Alu 136 293 -19 2193 112 3 16 chr9 111523366 111523503 -6339124 + AluSq SINE Alu 1 138 -175 2456 85 3 0 chr9 111523503 111523810 -6338817 + AluSp SINE Alu 1 308 -5 2193 112 3 16 chr9 111523810 111523975 -6338652 + AluSq SINE Alu 138 299 -14 2394 110 0 0 chr9 111524071 111524379 -6338248 + AluSg SINE Alu 1 308 -2 2458 97 3 0 chr9 111524390 111524699 -6337928 + AluSp SINE Alu 1 310 -3 2278 105 3 0 chr9 111524715 111525009 -6337618 + AluSq SINE Alu 1 295 -18 3158 118 24 60 chr9 111525009 111525604 -6337023 - MER50 LTR ERV1 -161 573 1 1049 126 0 0 chr9 111525651 111525786 -6336841 + AluJo SINE Alu 1 135 -177 2165 93 11 0 chr9 111525787 111526088 -6336539 + AluSx SINE Alu 1 304 0 378 212 80 118 chr9 111526154 111526281 -6336346 - Charlie7 DNA MER1_type -1565 1047 930 2629 53 0 0 chr9 111526281 111526580 -6336047 - AluY SINE Alu -12 299 1 378 212 80 118 chr9 111526580 111526664 -6335963 - Charlie7 DNA MER1_type -1682 930 844 1296 133 0 16 chr9 111526665 111526853 -6335774 + AluJb SINE Alu 1 185 -127 885 229 53 23 chr9 111526880 111527142 -6335485 - Charlie7 DNA MER1_type -1759 853 584 1581 179 31 17 chr9 111527177 111527467 -6335160 - AluJb SINE Alu -18 294 1 616 238 39 100 chr9 111527527 111527677 -6334950 - L1ME1 LINE L1 -5 6161 6034 2403 91 0 7 chr9 111527677 111527984 -6334643 - AluSx SINE Alu -7 305 1 616 238 39 100 chr9 111527984 111528114 -6334513 - L1ME1 LINE L1 -132 6034 5898 2570 53 10 3 chr9 111528114 111528417 -6334210 - AluY SINE Alu -6 305 1 1128 180 97 75 chr9 111528440 111528591 -6334036 - AluJo SINE Alu -19 293 132 2432 84 10 0 chr9 111528591 111528900 -6333727 - AluSp SINE Alu -1 312 1 1128 180 97 75 chr9 111528900 111529015 -6333612 - AluJo SINE Alu -180 132 21 21 57 0 0 chr9 111529039 111529074 -6333553 + AT_rich Low_complexity Low_complexity 1 35 0 816 189 0 0 chr9 111529074 111529206 -6333421 - FLAM_C SINE Alu -11 132 1 1235 144 0 11 chr9 111529215 111529403 -6333224 - AluSg/x SINE Alu -5 305 120 771 197 87 6 chr9 111529443 111529626 -6333001 - LTR8A LTR ERV1 -107 620 423 319 91 0 0 chr9 111529634 111529702 -6332925 - AluSp SINE Alu 0 309 242 2148 93 0 4 chr9 111529702 111529970 -6332657 - AluSp SINE Alu -46 267 1 841 162 50 71 chr9 111529986 111530145 -6332482 - LTR8 LTR ERV1 -497 194 38 2350 105 26 0 chr9 111530145 111530449 -6332178 - AluSx SINE Alu 0 312 1 841 162 50 71 chr9 111530449 111530487 -6332140 - LTR8 LTR ERV1 -653 38 1 2941 142 120 26 chr9 111530496 111531061 -6331566 + LTR35 LTR ERV1 1 618 0 1852 163 10 7 chr9 111531061 111531355 -6331272 + AluJo SINE Alu 5 299 -13 268 97 0 194 chr9 111531792 111531824 -6330803 + MLT1A1 LTR MaLR 27 39 -335 2409 87 16 10 chr9 111531824 111532134 -6330493 + AluSq SINE Alu 2 313 0 268 97 0 194 chr9 111532134 111532173 -6330454 + MLT1A1 LTR MaLR 39 84 -290 880 158 0 0 chr9 111532175 111532308 -6330319 + FLAM_C SINE Alu 1 133 -10 2146 111 4 0 chr9 111532317 111532619 -6330008 + AluSc SINE Alu 2 304 0 1103 169 0 11 chr9 111532667 111532856 -6329771 + MLT1A1 LTR MaLR 179 365 0 2366 78 7 0 chr9 111532901 111533194 -6329433 + AluY SINE Alu 1 295 -16 2403 96 0 0 chr9 111533238 111533539 -6329088 - AluSq SINE Alu -12 301 1 245 176 221 0 chr9 111533694 111533762 -6328865 + MIR SINE MIR 50 132 -130 1766 119 0 12 chr9 111533762 111534034 -6328593 - AluY SINE Alu 0 312 44 896 92 0 0 chr9 111534034 111534143 -6328484 - AluY SINE Alu -202 109 1 2296 119 10 0 chr9 111534173 111534483 -6328144 + AluSq SINE Alu 1 313 0 429 222 24 24 chr9 111534483 111534609 -6328018 + MIR SINE MIR 136 261 -1 1668 149 7 64 chr9 111534811 111534924 -6327703 + AluJb SINE Alu 17 135 -177 2563 62 0 0 chr9 111534924 111535228 -6327399 - AluY SINE Alu -7 304 1 1668 149 7 64 chr9 111535228 111535410 -6327217 + AluJb SINE Alu 135 295 -17 2472 82 0 7 chr9 111535425 111535728 -6326899 - AluSg SINE Alu -9 301 1 2263 75 4 0 chr9 111536564 111536842 -6325785 - AluSg SINE Alu -31 279 1 2740 27 0 0 chr9 111537604 111537904 -6324723 + AluY SINE Alu 1 300 -11 578 159 22 22 chr9 111537914 111538052 -6324575 + L1MA4 LINE L1 6163 6300 0 207 0 0 0 chr9 111538138 111538161 -6324466 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 373 238 38 69 chr9 111538303 111538348 -6324279 - Charlie7 DNA MER1_type -2452 160 115 2306 115 0 3 chr9 111538348 111538653 -6323974 - AluSx SINE Alu -8 304 1 373 238 38 69 chr9 111538653 111538767 -6323860 - Charlie7 DNA MER1_type -2497 115 6 784 242 49 36 chr9 111538804 111538947 -6323680 + MIR SINE MIR 3 149 -113 2456 88 7 0 chr9 111538947 111539253 -6323374 + AluSg SINE Alu 1 308 -2 784 242 49 36 chr9 111539253 111539360 -6323267 + MIR SINE MIR 149 253 -9 352 301 96 24 chr9 111539434 111539573 -6323054 + MIR SINE MIR 25 153 -109 2181 91 6 63 chr9 111539573 111539891 -6322736 + AluSx SINE Alu 1 300 -12 2417 79 0 16 chr9 111539891 111540195 -6322432 + AluSx SINE Alu 1 299 -13 352 301 96 24 chr9 111540195 111540263 -6322364 + MIR SINE MIR 152 248 -14 680 194 44 12 chr9 111540270 111540430 -6322197 + MLT1J2 LTR MaLR 1 165 -285 1610 177 3 11 chr9 111540571 111540854 -6321773 + AluJo SINE Alu 21 301 -11 2289 100 0 0 chr9 111540947 111541238 -6321389 - AluSc SINE Alu -18 291 1 180 0 0 0 chr9 111541333 111541353 -6321274 + (TG)n Simple_repeat Simple_repeat 1 20 0 1667 196 0 0 chr9 111541573 111541854 -6320773 - AluJo SINE Alu -4 308 28 2385 106 0 3 chr9 111541854 111542156 -6320471 + AluSg SINE Alu 1 301 -9 2080 141 6 10 chr9 111542531 111542844 -6319783 - AluSx SINE Alu 0 312 1 2636 176 22 24 chr9 111542891 111543450 -6319177 - L1MA8 LINE L1 -366 5925 5330 2440 94 0 0 chr9 111543450 111543749 -6318878 - AluSg SINE Alu -11 299 1 2636 176 22 24 chr9 111543749 111543814 -6318813 - L1MA8 LINE L1 -961 5330 5266 1298 120 0 0 chr9 111543823 111543990 -6318637 - AluSg/x SINE Alu -16 296 130 649 135 10 0 chr9 111543992 111544096 -6318531 + AluJo/FRAM SINE Alu 193 297 -15 2296 97 0 7 chr9 111544120 111544419 -6318208 + AluSx SINE Alu 4 300 -12 2099 116 3 30 chr9 111544419 111544721 -6317906 + AluSg SINE Alu 1 294 -16 425 221 0 0 chr9 111544721 111544816 -6317811 - L1M4 LINE L1 -866 5280 5186 233 276 133 0 chr9 111544980 111545078 -6317549 + MER117 DNA MER1_type 49 159 -38 2522 69 0 3 chr9 111545236 111545540 -6317087 - AluY SINE Alu -8 303 1 1841 140 7 0 chr9 111545555 111545826 -6316801 - AluSx SINE Alu -4 308 36 2216 119 0 0 chr9 111545833 111546128 -6316499 - AluSx SINE Alu -7 305 11 2316 93 0 23 chr9 111546464 111546766 -6315861 - AluSx SINE Alu -17 295 1 345 314 29 14 chr9 111546864 111547004 -6315623 + L2 LINE L2 2920 3061 -211 2256 98 0 61 chr9 111547416 111547742 -6314885 - AluY SINE Alu -5 306 1 1636 171 10 13 chr9 111547744 111547905 -6314722 - AluSx SINE Alu -4 298 138 2352 84 0 26 chr9 111547905 111548085 -6314542 - AluSg SINE Alu -7 303 120 261 0 0 0 chr9 111548085 111548114 -6314513 + (TATG)n Simple_repeat Simple_repeat 2 30 0 2290 105 0 3 chr9 111548114 111548404 -6314223 - AluSx SINE Alu -23 289 1 2352 84 0 26 chr9 111548404 111548538 -6314089 - AluSg SINE Alu -188 122 1 1636 171 10 13 chr9 111548538 111548675 -6313952 - AluSx SINE Alu -164 138 1 1124 112 0 0 chr9 111548839 111548982 -6313645 - AluSp SINE Alu -24 289 147 1263 134 0 0 chr9 111549009 111549188 -6313439 + AluSp SINE Alu 131 309 -4 630 306 168 3 chr9 111549219 111549516 -6313111 + L2 LINE L2 2968 3313 0 2247 120 0 0 chr9 111549520 111549814 -6312813 + AluSx SINE Alu 3 294 -18 2265 76 0 16 chr9 111550621 111550924 -6311703 + AluY SINE Alu 1 298 -13 1281 109 0 0 chr9 111550925 111551099 -6311528 + AluSg/x SINE Alu 132 305 -5 182 352 22 11 chr9 111551248 111551339 -6311288 - L2 LINE L2 0 3313 3222 1729 154 0 32 chr9 111551725 111552036 -6310591 + AluJo SINE Alu 1 301 -11 416 293 85 69 chr9 111552513 111552889 -6309738 - L2 LINE L2 -1 3271 2890 277 24 48 0 chr9 111553184 111553226 -6309401 + (TTTG)n Simple_repeat Simple_repeat 4 47 0 2172 38 0 48 chr9 111553226 111553519 -6309108 - AluY SINE Alu -32 279 1 880 153 6 41 chr9 111553794 111553964 -6308663 + FRAM SINE Alu 1 162 -14 609 146 95 80 chr9 111553974 111554111 -6308516 + FLAM_C SINE Alu 2 140 -3 742 79 68 127 chr9 111554112 111554318 -6308309 - Tigger3(Golem) DNA MER2_type -465 2563 2373 2227 114 0 0 chr9 111554318 111554626 -6308001 - AluSc SINE Alu -1 308 1 742 79 68 127 chr9 111554626 111554671 -6307956 - Tigger3(Golem) DNA MER2_type -655 2373 2327 443 234 129 24 chr9 111554671 111554795 -6307832 + FLAM_A SINE Alu 1 137 -5 814 158 22 0 chr9 111554795 111554934 -6307693 - Tigger3(Golem) DNA MER2_type -697 2332 2191 1783 141 14 7 chr9 111554937 111555228 -6307399 + AluJb SINE Alu 5 297 -15 2123 119 0 7 chr9 111555228 111555531 -6307096 + AluSx SINE Alu 1 301 -11 895 201 12 0 chr9 111555565 111555729 -6306898 - Tigger3(Golem) DNA MER2_type -2853 176 11 1553 196 52 35 chr9 111555732 111556079 -6306548 - L1M3 LINE L1 -396 5784 5432 784 138 0 0 chr9 111556079 111556195 -6306432 - AluJb SINE Alu -17 295 180 2254 107 7 0 chr9 111557419 111557729 -6304898 + AluSx SINE Alu 1 312 0 293 139 35 35 chr9 111557733 111557819 -6304808 + GA-rich Low_complexity Low_complexity 3 88 0 225 231 0 77 chr9 111557904 111557982 -6304645 - MIR SINE MIR -81 181 110 23 33 0 0 chr9 111559236 111559266 -6303361 + GC_rich Low_complexity Low_complexity 1 30 0 200 321 11 43 chr9 111559673 111559857 -6302770 + G-rich Low_complexity Low_complexity 3 180 0 330 299 158 5 chr9 111560282 111560466 -6302161 - MIR SINE MIR -19 243 32 1938 115 7 24 chr9 111560586 111560881 -6301746 - AluSx SINE Alu 0 312 23 205 29 29 29 chr9 111561077 111561112 -6301515 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 2170 115 0 0 chr9 111561142 111561446 -6301181 + AluSg SINE Alu 6 309 -1 2185 93 0 0 chr9 111561493 111561784 -6300843 + AluSx SINE Alu 1 291 -21 435 293 67 18 chr9 111561816 111561946 -6300681 - MIR SINE MIR -14 248 107 1852 186 145 16 chr9 111561946 111562393 -6300234 + MLT1D LTR MaLR 1 505 0 435 293 67 18 chr9 111562393 111562426 -6300201 - MIR SINE MIR -155 107 77 2195 113 0 0 chr9 111562449 111562751 -6299876 + AluSg SINE Alu 1 302 -8 2457 66 0 0 chr9 111562755 111563058 -6299569 + AluY SINE Alu 5 307 -4 221 310 0 0 chr9 111563219 111563290 -6299337 - L2 LINE L2 -18 3254 3184 2085 103 27 0 chr9 111563322 111563622 -6299005 + AluSc SINE Alu 1 308 -1 191 174 0 43 chr9 111563754 111563800 -6298827 + MIR SINE MIR 213 256 -6 184 318 15 0 chr9 111564012 111564078 -6298549 - MIR SINE MIR -103 159 93 2102 114 0 13 chr9 111564078 111564385 -6298242 + AluSp SINE Alu 1 303 -10 2060 117 3 7 chr9 111564393 111564701 -6297926 + AluSx SINE Alu 1 307 -5 2118 94 0 0 chr9 111564717 111564994 -6297633 + AluSc SINE Alu 25 301 -8 2114 116 6 3 chr9 111564996 111565307 -6297320 + AluSq SINE Alu 2 313 0 617 190 5 70 chr9 111565310 111565333 -6297294 - MER33 DNA MER1_type -2348 237 214 1681 126 48 38 chr9 111565333 111565626 -6297001 - AluSx SINE Alu -16 296 1 617 190 5 70 chr9 111565626 111565802 -6296825 - MER33 DNA MER1_type -2371 214 51 422 219 0 102 chr9 111565982 111566025 -6296602 + L2 LINE L2 3199 3245 -68 2301 85 110 90 chr9 111566025 111566234 -6296393 + MLT2A1 LTR ERVL 1 204 -240 2209 61 11 0 chr9 111566234 111566542 -6296085 + AluSp SINE Alu 1 311 0 2301 85 110 90 chr9 111566542 111566766 -6295861 + MLT2A1 LTR ERVL 204 444 0 422 219 0 102 chr9 111566766 111566850 -6295777 + L2 LINE L2 3245 3313 0 1637 158 10 23 chr9 111567118 111567422 -6295205 + AluJo SINE Alu 1 300 -12 2378 62 0 0 chr9 111567542 111567834 -6294793 + AluY SINE Alu 1 292 -19 347 296 173 22 chr9 111567839 111568018 -6294609 - MIR SINE MIR -4 258 53 2146 108 0 3 chr9 111568180 111568477 -6294150 - AluSq SINE Alu -17 296 1 1102 67 0 0 chr9 111568477 111568611 -6294016 - AluSg1 SINE Alu -175 134 1 360 119 0 34 chr9 111568614 111568673 -6293954 - AluSq/x SINE Alu -170 132 76 981 87 0 0 chr9 111568819 111568968 -6293659 - LTR10C LTR ERV1 -440 151 3 924 161 13 0 chr9 111568968 111569123 -6293504 + FRAM SINE Alu 19 175 -1 425 224 0 118 chr9 111569123 111569284 -6293343 - L1M4 LINE L1 -1460 4686 4545 195 42 0 0 chr9 111569416 111569440 -6293187 + (CACG)n Simple_repeat Simple_repeat 4 27 0 458 300 182 0 chr9 111569452 111569622 -6293005 + L1ME3A LINE L1 5702 5902 -268 1455 192 48 24 chr9 111569801 111570093 -6292534 + AluJo SINE Alu 1 299 -13 2072 81 14 24 chr9 111570265 111570562 -6292065 + AluY SINE Alu 1 294 -17 1002 156 19 0 chr9 111570570 111570724 -6291903 + AluJb SINE Alu 132 288 -24 1133 89 106 135 chr9 111572276 111572416 -6290211 + MER30 DNA MER1_type 1 133 -97 1852 134 7 13 chr9 111572416 111572714 -6289913 - AluSq SINE Alu -15 298 3 1133 89 106 135 chr9 111572714 111572810 -6289817 + MER30 DNA MER1_type 133 230 0 2190 113 6 3 chr9 111573575 111573886 -6288741 + AluSx SINE Alu 1 312 0 2518 67 0 0 chr9 111573892 111574205 -6288422 + AluSq SINE Alu 1 313 0 384 22 0 0 chr9 111576327 111576372 -6286255 + (TG)n Simple_repeat Simple_repeat 2 46 0 858 100 8 0 chr9 111576372 111576492 -6286135 - AluSg/x SINE Alu -26 283 163 216 244 70 35 chr9 111577178 111577264 -6285363 - MIR3 SINE MIR -30 178 90 852 169 0 0 chr9 111577692 111577822 -6284805 - FLAM_A SINE Alu -3 130 1 726 137 46 46 chr9 111577961 111578092 -6284535 + AluJo/FLAM SINE Alu 1 131 -171 2287 72 0 31 chr9 111578092 111578411 -6284216 + AluY SINE Alu 1 309 -2 312 288 19 5 chr9 111578890 111579102 -6283525 + GA-rich Low_complexity Low_complexity 1 215 0 1160 148 8 41 chr9 111582206 111582450 -6280177 - AluSq SINE Alu -75 238 3 471 87 163 76 chr9 111582454 111582546 -6280081 + MER30 DNA MER1_type 131 230 0 659 122 168 0 chr9 111583127 111583234 -6279393 - FLAM_C SINE Alu -7 126 2 1172 177 10 5 chr9 111583270 111583479 -6279148 - AluJb SINE Alu -93 219 10 652 176 109 0 chr9 111583517 111583636 -6278991 + FLAM_C SINE Alu 2 133 0 1517 251 127 20 chr9 111583706 111584304 -6278323 - L1MC4 LINE L1 -143 7899 7238 855 226 118 21 chr9 111584351 111584630 -6277997 - L1MC4 LINE L1 -1065 6977 6672 259 382 8 15 chr9 111584754 111584885 -6277742 + L1ME LINE L1 5569 5698 -423 237 297 50 20 chr9 111585164 111585265 -6277362 - L1ME2 LINE L1 -9 6155 6052 1220 156 51 79 chr9 111585453 111585768 -6276859 - AluJo SINE Alu -1 311 6 2304 90 0 0 chr9 111585782 111586082 -6276545 - AluSx SINE Alu -12 300 1 335 281 123 39 chr9 111586286 111586489 -6276138 - MIR SINE MIR -20 242 23 200 173 58 19 chr9 111587042 111587094 -6275533 + MIR SINE MIR 8 61 -201 744 92 176 35 chr9 111587103 111587245 -6275382 - L1PA16 LINE L1 0 6166 6005 206 355 6 27 chr9 111587629 111587812 -6274815 + CT-rich Low_complexity Low_complexity 2 180 0 209 292 0 0 chr9 111587914 111587979 -6274648 + T-rich Low_complexity Low_complexity 1 65 0 1985 113 0 0 chr9 111588141 111588416 -6274211 - AluSx SINE Alu -35 277 3 385 319 57 0 chr9 111588698 111588855 -6273772 - MIR SINE MIR -17 245 80 1912 104 16 62 chr9 111589018 111589189 -6273438 - AluSx SINE Alu -17 295 143 2419 66 0 0 chr9 111589189 111589491 -6273136 - AluY SINE Alu -6 305 4 1912 104 16 62 chr9 111589491 111589628 -6272999 - AluSx SINE Alu -169 143 1 451 304 70 0 chr9 111589656 111589827 -6272800 + MIR SINE MIR 44 226 -36 244 318 28 37 chr9 111590656 111590763 -6271864 + MIR SINE MIR 59 164 -98 34 24 0 0 chr9 111590831 111590872 -6271755 + AT_rich Low_complexity Low_complexity 1 41 0 2253 77 0 7 chr9 111591452 111591750 -6270877 + AluSx SINE Alu 2 297 -15 588 252 125 29 chr9 111591750 111592063 -6270564 - L1M4 LINE L1 -1817 4329 3987 519 114 0 0 chr9 111592176 111592246 -6270381 + AluSq/x SINE Alu 72 141 -172 33 25 0 0 chr9 111592263 111592303 -6270324 + AT_rich Low_complexity Low_complexity 1 40 0 2402 53 0 13 chr9 111592313 111592613 -6270014 + AluY SINE Alu 1 296 -15 1065 76 0 0 chr9 111592634 111592766 -6269861 + AluSp SINE Alu 1 132 -181 2392 75 0 0 chr9 111592769 111593076 -6269551 + AluY SINE Alu 1 307 -4 1295 233 22 13 chr9 111593077 111593390 -6269237 + MER74B LTR ERVL 213 528 -94 1470 115 0 14 chr9 111593981 111594199 -6268428 - AluSg/x SINE Alu -13 297 83 309 231 0 13 chr9 111594199 111594277 -6268350 - L1MC1 LINE L1 -58 6275 6199 1031 186 0 0 chr9 111594421 111594609 -6268018 - AluJ SINE Alu -4 308 121 299 143 0 0 chr9 111594631 111594673 -6267954 - AluSg/x SINE Alu -52 248 207 368 311 98 38 chr9 111594775 111595010 -6267617 - L1MEd LINE L1 -5626 493 245 206 167 21 0 chr9 111596030 111596078 -6266549 + T-rich Low_complexity Low_complexity 2 50 0 192 40 0 0 chr9 111596098 111596123 -6266504 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 200 161 36 36 chr9 111601424 111601480 -6261147 + T-rich Low_complexity Low_complexity 2 57 0 358 305 110 0 chr9 111602189 111602343 -6260284 + MIR SINE MIR 59 229 -33 1585 108 0 9 chr9 111606576 111606799 -6255828 - AluSq SINE Alu -91 222 2 390 336 86 16 chr9 111606916 111607160 -6255467 + MIR SINE MIR 2 262 0 858 140 0 22 chr9 111607870 111608006 -6254621 - AluJ SINE Alu -169 133 1 198 264 161 0 chr9 111608191 111608278 -6254349 + L2 LINE L2 2127 2227 -1087 2244 119 0 0 chr9 111608595 111608907 -6253720 - AluSx SINE Alu 0 312 1 197 304 14 0 chr9 111609753 111609822 -6252805 + L2 LINE L2 1928 1997 -1317 239 353 8 15 chr9 111610047 111610180 -6252447 + L2 LINE L2 2455 2586 -728 225 347 102 6 chr9 111610289 111610465 -6252162 + L2 LINE L2 2857 3049 -264 189 269 87 29 chr9 111610544 111610648 -6251979 + L2 LINE L2 3204 3313 0 2188 104 0 3 chr9 111610669 111610966 -6251661 + AluSx SINE Alu 1 296 -16 1129 147 29 170 chr9 111613228 111613569 -6249058 - AluJo SINE Alu -14 298 6 392 286 34 0 chr9 111615785 111615904 -6246723 - MIR3 SINE MIR -1 207 85 205 244 0 0 chr9 111616563 111616604 -6246023 + L2 LINE L2 3266 3306 -7 2003 117 3 3 chr9 111616856 111617138 -6245489 - AluSx SINE Alu -30 282 1 755 157 0 0 chr9 111617490 111617611 -6245016 - FLAM_C SINE Alu -8 135 15 860 164 0 8 chr9 111617850 111617984 -6244643 + FLAM_C SINE Alu 1 133 0 393 301 72 21 chr9 111620483 111620676 -6241951 - MER112 DNA MER1_type -41 219 17 1773 156 21 0 chr9 111621487 111621769 -6240858 - AluJb SINE Alu -24 288 1 1660 169 0 32 chr9 111623032 111623346 -6239281 + AluJb SINE Alu 1 304 -8 1903 157 0 10 chr9 111623591 111623896 -6238731 + AluJo SINE Alu 1 302 -10 1861 153 28 0 chr9 111623896 111624183 -6238444 + AluSx SINE Alu 1 295 -17 21 0 0 0 chr9 111627315 111627336 -6235291 + GC_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr9 111627552 111627590 -6235037 + GC_rich Low_complexity Low_complexity 1 38 0 2276 89 0 0 chr9 111627844 111628147 -6234480 + AluY SINE Alu 1 303 -8 1279 237 22 25 chr9 111628147 111628199 -6234428 + MER74B LTR ERVL 163 214 -408 2524 59 0 0 chr9 111628199 111628506 -6234121 + AluY SINE Alu 1 307 -4 1279 237 22 25 chr9 111628506 111628820 -6233807 + MER74B LTR ERVL 214 528 -94 1449 129 0 18 chr9 111629411 111629636 -6232991 - AluSg/x SINE Alu -13 299 79 364 330 34 99 chr9 111629765 111630271 -6232356 - L1MEc LINE L1 -4132 2475 1539 21 0 0 0 chr9 111630923 111630944 -6231683 + GC_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr9 111631160 111631198 -6231429 + GC_rich Low_complexity Low_complexity 1 38 0 2276 89 0 0 chr9 111631452 111631755 -6230872 + AluY SINE Alu 1 303 -8 2105 84 7 7 chr9 111631807 111632115 -6230512 + AluY SINE Alu 1 308 0 2080 96 0 60 chr9 111632309 111632623 -6230004 + AluSx SINE Alu 1 295 -17 223 234 0 0 chr9 111632722 111632769 -6229858 - L2 LINE L2 0 3313 3267 2073 110 4 0 chr9 111632885 111633190 -6229437 - AluSx SINE Alu 0 306 1 236 283 40 50 chr9 111633225 111633324 -6229303 + MIR3 SINE MIR 92 189 -19 1796 163 0 22 chr9 111633355 111633668 -6228959 + AluSx SINE Alu 3 308 -4 287 233 82 0 chr9 111633884 111633957 -6228670 + MER58C DNA MER1_type 127 205 -10 291 242 70 158 chr9 111635098 111635241 -6227386 - MIR SINE MIR -21 241 122 2269 97 0 6 chr9 111635241 111635552 -6227075 + AluSc SINE Alu 1 309 0 291 242 70 158 chr9 111635552 111635623 -6227004 - MIR SINE MIR -140 122 46 241 251 67 97 chr9 111636313 111636408 -6226219 - L2 LINE L2 -14 3258 3171 776 209 124 62 chr9 111636408 111636618 -6226009 - MER58A DNA MER1_type -1 223 1 241 251 67 97 chr9 111636618 111636717 -6225910 - L2 LINE L2 -101 3171 3070 2061 120 33 0 chr9 111636811 111637165 -6225462 + AluSx SINE Alu 1 364 0 452 208 32 0 chr9 111637554 111637679 -6224948 + L1MC4 LINE L1 7789 7917 -125 297 274 0 0 chr9 111637786 111637859 -6224768 - MLT1B LTR MaLR -3 387 315 2032 72 8 4 chr9 111637861 111638123 -6224504 + AluSq SINE Alu 1 263 -50 249 33 0 0 chr9 111638123 111638153 -6224474 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 1252 223 10 57 chr9 111638153 111638467 -6224160 + AluJb SINE Alu 2 300 -2 698 126 0 0 chr9 111638619 111638730 -6223897 + L1MC1 LINE L1 6199 6309 -24 2240 94 3 3 chr9 111639128 111639435 -6223192 - AluSx SINE Alu -5 307 1 479 257 22 15 chr9 111639437 111639573 -6223054 - MIR SINE MIR -57 205 69 1628 166 24 24 chr9 111640023 111640135 -6222492 + AluJo SINE Alu 1 112 -200 2201 108 0 0 chr9 111640135 111640431 -6222196 - AluSx SINE Alu -16 296 1 1628 166 24 24 chr9 111640431 111640445 -6222182 + AluJo SINE Alu 112 125 -187 194 0 39 0 chr9 111640445 111640471 -6222156 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1628 166 24 24 chr9 111640471 111640638 -6221989 + AluJo SINE Alu 124 295 -17 527 128 163 0 chr9 111640765 111640851 -6221776 - AluSc SINE Alu -16 293 194 1130 96 0 0 chr9 111640852 111640998 -6221629 - AluSq/x SINE Alu -166 146 1 799 198 28 0 chr9 111641004 111641181 -6221446 - L1MB8 LINE L1 -311 5867 5686 2103 117 0 7 chr9 111641318 111641617 -6221010 - AluSx SINE Alu -15 297 1 395 263 119 29 chr9 111641634 111641880 -6220747 - L1MDa LINE L1 -5145 938 678 2417 63 7 0 chr9 111641978 111642281 -6220346 - AluY SINE Alu -6 305 1 1973 118 3 20 chr9 111642693 111642989 -6219638 - AluSq SINE Alu -12 301 11 635 317 33 59 chr9 111643076 111643191 -6219436 - L1M4 LINE L1 -1494 4652 4535 1787 148 0 30 chr9 111643191 111643488 -6219139 + AluJo SINE Alu 1 288 -24 635 317 33 59 chr9 111643488 111643675 -6218952 - L1M4 LINE L1 -1611 4535 4358 943 200 6 0 chr9 111643680 111643845 -6218782 + FRAM SINE Alu 1 166 0 264 294 53 93 chr9 111643997 111644197 -6218430 - L1M4 LINE L1 -1981 4165 3958 1555 146 41 4 chr9 111644197 111644465 -6218162 + AluJb SINE Alu 1 278 -34 264 294 53 93 chr9 111644465 111644493 -6218134 - L1M4 LINE L1 -2188 3958 3930 1674 355 0 0 chr9 111644493 111644811 -6217816 + AluYb8 SINE Alu 1 318 0 264 294 53 93 chr9 111644811 111644904 -6217723 - L1M4 LINE L1 -2216 3930 3856 230 182 15 30 chr9 111645155 111645221 -6217406 - MLT1J1 LTR MaLR -363 83 19 265 327 70 14 chr9 111645248 111645462 -6217165 - L1M4 LINE L1 -2293 3853 3628 1094 122 0 0 chr9 111645465 111645621 -6217006 - AluSg/x SINE Alu -11 299 144 2160 76 28 0 chr9 111645637 111645926 -6216701 - AluSx SINE Alu -15 297 1 412 350 25 0 chr9 111646006 111646163 -6216464 - MIR SINE MIR -60 202 42 206 280 40 13 chr9 111646845 111646920 -6215707 - MIR SINE MIR -130 132 56 1736 144 26 52 chr9 111651954 111652041 -6210586 + AluJo SINE Alu 1 89 -223 2103 89 9 74 chr9 111652041 111652366 -6210261 + AluSq SINE Alu 1 304 -9 1736 144 26 52 chr9 111652366 111652583 -6210044 + AluJo SINE Alu 89 297 -15 1894 123 0 44 chr9 111652585 111652878 -6209749 + AluSx SINE Alu 1 280 -32 186 71 0 0 chr9 111652878 111652906 -6209721 + (CAAA)n Simple_repeat Simple_repeat 4 31 0 312 250 21 21 chr9 111653165 111653261 -6209366 - MER103 DNA DNA -48 118 23 201 191 24 0 chr9 111653365 111653407 -6209220 - MER5B DNA MER1_type -135 43 1 23 0 0 0 chr9 111653585 111653608 -6209019 + AT_rich Low_complexity Low_complexity 1 23 0 228 35 0 0 chr9 111653886 111653915 -6208712 + (CAGGA)n Simple_repeat Simple_repeat 1 29 0 217 226 16 16 chr9 111655126 111655188 -6207439 + L2 LINE L2 3191 3252 -20 214 320 64 32 chr9 111655302 111655427 -6207200 - MIR3 SINE MIR -73 135 7 1509 175 49 7 chr9 111656372 111656657 -6205970 - AluJo SINE Alu -12 300 4 252 0 0 0 chr9 111657107 111657135 -6205492 + (CA)n Simple_repeat Simple_repeat 2 29 0 183 23 10 0 chr9 111657159 111657227 -6205400 + (CA)n Simple_repeat Simple_repeat 2 25 0 180 0 0 0 chr9 111657293 111657313 -6205314 + (CA)n Simple_repeat Simple_repeat 2 21 0 180 0 0 0 chr9 111657375 111657395 -6205232 + (CA)n Simple_repeat Simple_repeat 2 21 0 201 183 0 0 chr9 111657459 111657519 -6205108 + (CA)n Simple_repeat Simple_repeat 2 61 0 198 0 0 0 chr9 111657645 111657667 -6204960 + (CA)n Simple_repeat Simple_repeat 2 23 0 216 0 0 0 chr9 111657691 111657715 -6204912 + (CA)n Simple_repeat Simple_repeat 2 25 0 252 0 0 0 chr9 111657739 111657767 -6204860 + (CA)n Simple_repeat Simple_repeat 2 29 0 180 0 0 0 chr9 111657867 111657887 -6204740 + (CA)n Simple_repeat Simple_repeat 2 21 0 198 0 0 0 chr9 111657949 111657971 -6204656 + (CA)n Simple_repeat Simple_repeat 2 23 0 198 0 0 0 chr9 111658033 111658055 -6204572 + (CA)n Simple_repeat Simple_repeat 2 23 0 244 301 68 0 chr9 111659918 111660021 -6202606 - L2 LINE L2 -3 3269 3160 290 250 88 0 chr9 111661588 111661668 -6200959 + MIR SINE MIR 65 151 -57 206 320 58 10 chr9 111662616 111662719 -6199908 - MIR SINE MIR -148 114 7 330 302 47 0 chr9 111663157 111663286 -6199341 + MER117 DNA MER1_type 16 150 -47 1895 136 29 26 chr9 111663460 111663770 -6198857 - AluSx SINE Alu -1 311 1 293 395 68 6 chr9 111664958 111665120 -6197507 - MIR SINE MIR -45 217 46 207 272 19 48 chr9 111665975 111666078 -6196549 - L2 LINE L2 -1820 1494 1395 624 173 36 0 chr9 111668444 111668554 -6194073 - FLAM_C SINE Alu -7 136 23 272 320 107 0 chr9 111669178 111669300 -6193327 + MIR3 SINE MIR 49 183 -25 266 274 53 136 chr9 111669424 111669542 -6193085 - L2 LINE L2 -14 3258 3132 2272 110 0 0 chr9 111669542 111669850 -6192777 - AluSg SINE Alu -2 308 1 1727 182 14 0 chr9 111669852 111670148 -6192479 - AluJb SINE Alu -12 300 1 266 274 53 136 chr9 111670148 111670365 -6192262 - L2 LINE L2 -141 3131 2948 2245 88 7 3 chr9 111670563 111670859 -6191768 + AluSx SINE Alu 1 297 -15 449 230 0 67 chr9 111670977 111671112 -6191515 + AluSg/x SINE Alu 171 296 -14 2235 81 0 59 chr9 111671854 111672176 -6190451 + AluSc SINE Alu 1 303 -6 278 226 57 19 chr9 111672491 111672597 -6190030 + L1ME4a LINE L1 6011 6120 -1 1909 173 0 3 chr9 111672604 111672917 -6189710 + AluJo SINE Alu 1 312 0 390 328 46 0 chr9 111673466 111673597 -6189030 - MIR SINE MIR -79 183 47 1006 98 0 0 chr9 111673707 111673840 -6188787 - AluSq/x SINE Alu -179 133 1 1193 257 123 19 chr9 111673840 111674483 -6188144 - L1MDa LINE L1 -1860 4680 3971 2129 132 0 3 chr9 111674494 111674805 -6187822 - AluSg SINE Alu 0 310 1 746 279 19 34 chr9 111674835 111675158 -6187469 - L1MDa LINE L1 -3583 2957 2640 1723 126 14 32 chr9 111675160 111675465 -6187162 - AluJb SINE Alu 0 302 3 402 424 31 62 chr9 111675504 111675678 -6186949 - L1MDa LINE L1 -4444 2096 1918 2341 82 0 0 chr9 111675678 111675981 -6186646 - AluY SINE Alu -8 303 1 402 424 31 62 chr9 111675981 111676294 -6186333 - L1MDa LINE L1 -4622 1918 1624 461 198 147 32 chr9 111676791 111676948 -6185679 - LTR41 LTR ERVL -595 178 4 753 285 28 11 chr9 111676967 111677107 -6185520 - L1MB7 LINE L1 -19 6165 6029 1837 121 0 68 chr9 111677107 111677277 -6185350 - AluSx SINE Alu -26 286 145 1903 137 3 0 chr9 111677277 111677561 -6185066 - AluSx SINE Alu -20 292 8 1837 121 0 68 chr9 111677561 111677697 -6184930 - AluSx SINE Alu -167 145 1 753 285 28 11 chr9 111677697 111677840 -6184787 - L1MB7 LINE L1 -155 6029 5877 2476 69 0 0 chr9 111677850 111678154 -6184473 - AluY SINE Alu -7 304 1 2620 130 53 34 chr9 111678181 111678612 -6184015 - MER41B LTR ERV1 0 635 191 2114 124 7 0 chr9 111678612 111678919 -6183708 - AluSx SINE Alu -3 309 1 2620 130 53 34 chr9 111678919 111678993 -6183634 - MER41B LTR ERV1 -444 191 120 261 0 0 0 chr9 111679361 111679390 -6183237 + (TG)n Simple_repeat Simple_repeat 1 29 0 231 114 0 0 chr9 111680219 111680254 -6182373 + (T)n Simple_repeat Simple_repeat 1 35 0 1784 183 0 0 chr9 111680267 111680562 -6182065 + AluJb SINE Alu 1 295 -17 1593 156 91 4 chr9 111681124 111681400 -6181227 - AluJo SINE Alu -12 300 1 350 217 9 75 chr9 111682542 111682648 -6179979 + MIR SINE MIR 82 180 -82 257 295 173 6 chr9 111683699 111683874 -6178753 - MIR SINE MIR -34 228 21 1784 188 3 0 chr9 111684367 111684670 -6177957 - AluJb SINE Alu -7 305 2 185 282 192 0 chr9 111686407 111686485 -6176142 + MIR SINE MIR 48 140 -122 423 174 0 22 chr9 111686647 111686739 -6175888 - LTR22 LTR ERVK -490 90 1 191 277 223 45 chr9 111687604 111687716 -6174911 - MIR SINE MIR -58 204 73 228 248 105 45 chr9 111687907 111688040 -6174587 - L2 LINE L2 -624 2690 2550 183 351 18 0 chr9 111688162 111688219 -6174408 - L2 LINE L2 -92 3180 3123 266 276 0 46 chr9 111688835 111688922 -6173705 + C-rich Low_complexity Low_complexity 5 87 0 2218 88 0 7 chr9 111689553 111689849 -6172778 - AluY SINE Alu -17 294 1 218 287 70 78 chr9 111690172 111690301 -6172326 + L2 LINE L2 2907 3034 -238 2299 78 3 3 chr9 111690460 111690766 -6171861 + AluSx SINE Alu 1 306 -6 245 325 130 0 chr9 111691992 111692115 -6170512 - MIR3 SINE MIR -28 180 42 1062 274 33 38 chr9 111692469 111692834 -6169793 + MLT1H LTR MaLR 5 367 -182 348 128 16 11 chr9 111692996 111693080 -6169547 + MLT1H LTR MaLR 471 549 0 722 227 0 0 chr9 111693182 111693314 -6169313 - FLAM_A SINE Alu -1 132 1 212 240 20 0 chr9 111693813 111693863 -6168764 + GA-rich Low_complexity Low_complexity 2 52 0 847 289 21 13 chr9 111694159 111694398 -6168229 + MIR SINE MIR 18 258 -4 188 275 99 11 chr9 111694515 111694606 -6168021 + MIR SINE MIR 49 147 -115 813 117 25 0 chr9 111694876 111694996 -6167631 - FLAM_A SINE Alu -12 130 8 237 298 173 10 chr9 111695148 111695252 -6167375 - MIR SINE MIR -72 136 16 464 223 108 14 chr9 111696709 111696848 -6165779 + L1MC1 LINE L1 5994 6145 -188 2131 127 0 0 chr9 111697369 111697669 -6164958 - AluSq SINE Alu -13 300 1 1221 165 30 42 chr9 111697783 111698020 -6164607 + AluJo SINE Alu 1 234 -78 413 357 35 0 chr9 111698744 111698915 -6163712 + MIR SINE MIR 46 222 -40 421 255 83 45 chr9 111701239 111701396 -6161231 - L1ME4a LINE L1 0 6121 5959 1052 118 0 0 chr9 111701428 111701572 -6161055 + AluSq/x SINE Alu 8 151 -161 2123 85 26 7 chr9 111701573 111701844 -6160783 + AluSx SINE Alu 35 310 -2 251 232 0 0 chr9 111701902 111701958 -6160669 - L1ME4a LINE L1 -299 5822 5767 236 288 0 12 chr9 111701972 111702052 -6160575 - L1ME4a LINE L1 -437 5684 5606 521 245 49 43 chr9 111702287 111702471 -6160156 - MIR SINE MIR -47 215 31 221 310 160 6 chr9 111703970 111704108 -6158519 + MIR SINE MIR 20 188 -20 2176 126 14 0 chr9 111704108 111704402 -6158225 + AluSx SINE Alu 1 298 -14 221 310 160 6 chr9 111704402 111704426 -6158201 + MIR SINE MIR 188 207 -1 241 154 0 0 chr9 111705577 111705616 -6157011 - L1ME2 LINE L1 -56 6108 6070 275 327 0 10 chr9 111705874 111705975 -6156652 + L1ME4a LINE L1 5513 5612 -509 563 203 78 16 chr9 111705990 111706118 -6156509 + FRAM SINE Alu 2 137 -39 2351 38 41 38 chr9 111706133 111706426 -6156201 - AluY SINE Alu -17 294 1 351 310 84 38 chr9 111706508 111706721 -6155906 + L1ME4a LINE L1 5662 5884 -237 344 203 14 0 chr9 111706816 111706885 -6155742 + L1ME4a LINE L1 6046 6115 -6 632 123 0 0 chr9 111706925 111707006 -6155621 - AluJ/FLAM SINE Alu -230 82 2 1739 163 42 10 chr9 111707979 111708268 -6154359 + AluJb SINE Alu 1 298 -14 2550 89 0 0 chr9 111708430 111708743 -6153884 + AluSq SINE Alu 1 313 0 253 271 221 16 chr9 111709202 111709324 -6153303 - MIR SINE MIR -48 214 68 238 268 228 47 chr9 111709797 111709924 -6152703 + MIR SINE MIR 113 262 0 518 312 163 7 chr9 111710005 111710300 -6152327 + L2 LINE L2 2972 3312 -1 2414 90 3 0 chr9 111710943 111711242 -6151385 + AluSx SINE Alu 1 300 -12 740 316 27 19 chr9 111711679 111711935 -6150692 - MIR SINE MIR 0 262 5 282 29 0 0 chr9 111713432 111713467 -6149160 + (TG)n Simple_repeat Simple_repeat 1 35 0 1162 214 63 20 chr9 111716263 111716664 -6145963 - MER54B LTR ERVL 0 793 485 809 170 7 0 chr9 111718680 111718815 -6143812 + AluJb SINE Alu 1 136 -176 190 304 18 71 chr9 111719865 111719977 -6142650 + MIR SINE MIR 113 218 -44 679 246 56 56 chr9 111720117 111720312 -6142315 - MIR SINE MIR -41 221 27 190 333 19 0 chr9 111720985 111721039 -6141588 - L3 LINE CR1 -105 1472 1418 248 280 54 32 chr9 111721306 111721399 -6141228 + MIR SINE MIR 132 226 -36 1125 132 5 26 chr9 111721825 111722015 -6140612 - MER20 DNA MER1_type -3 216 31 2200 106 0 13 chr9 111722105 111722431 -6140196 + AluSx SINE Alu 1 312 0 2171 105 0 68 chr9 111723028 111723352 -6139275 - AluSx SINE Alu -10 302 1 620 292 96 5 chr9 111723452 111723661 -6138966 + MIR SINE MIR 27 254 -8 238 333 177 7 chr9 111725278 111725425 -6137202 - MIR3 SINE MIR -1 207 36 429 204 0 11 chr9 111725434 111725522 -6137105 + L1MB8 LINE L1 4041 4127 -2019 * 805 227 64 0 chr9 111725515 111725735 -6136892 + L1MB8 LINE L1 4993 5226 -920 2125 236 50 77 chr9 111725735 111726281 -6136346 - Tigger3b DNA MER2_type 0 1231 701 1265 192 5 0 chr9 111726291 111726505 -6136122 - AluJo SINE Alu -9 303 89 3009 118 83 55 chr9 111726509 111727126 -6135501 - Tigger3b DNA MER2_type -596 635 2 3770 171 61 25 chr9 111727127 111727144 -6135483 + L1MB8 LINE L1 5225 5240 -938 1119 207 141 16 chr9 111727144 111727449 -6135178 + MER2 DNA MER2_type 1 343 -1 3770 171 61 25 chr9 111727449 111728350 -6134277 + L1MB8 LINE L1 5240 6172 -6 1818 118 81 4 chr9 111728472 111728744 -6133883 + AluJo SINE Alu 1 293 -19 381 305 11 0 chr9 111728767 111728862 -6133765 + L2 LINE L2 3176 3271 -1 864 123 25 0 chr9 111729650 111729772 -6132855 + AluY SINE Alu 133 257 -54 1330 57 0 6 chr9 111729772 111729930 -6132697 - AluY SINE Alu -154 157 1 255 228 38 152 chr9 111729996 111730154 -6132473 + MIR SINE MIR 107 246 -16 282 56 0 0 chr9 111731273 111731309 -6131318 + (CAGA)n Simple_repeat Simple_repeat 1 36 0 340 290 172 0 chr9 111731601 111731770 -6130857 + MER3 DNA MER1_type 12 209 0 788 291 100 24 chr9 111731889 111732339 -6130288 - L1ME3 LINE L1 -196 5966 5483 23 33 0 0 chr9 111733371 111733401 -6129226 + AT_rich Low_complexity Low_complexity 1 30 0 1107 106 0 0 chr9 111733421 111733562 -6129065 - AluJb SINE Alu -171 141 1 436 318 109 25 chr9 111733566 111733767 -6128860 + MIR SINE MIR 45 262 0 2559 54 0 0 chr9 111733865 111734161 -6128466 - AluY SINE Alu -15 296 1 307 223 75 21 chr9 111734381 111734475 -6128152 - HAL1b LINE L1 -3 1345 1247 433 253 71 11 chr9 111734952 111735134 -6127493 + L1ME3A LINE L1 5348 5540 -624 1058 244 51 36 chr9 111735255 111735655 -6126972 + L1ME3A LINE L1 5742 6169 -1 184 286 0 0 chr9 111736069 111736111 -6126516 + MIR SINE MIR 147 188 -74 557 272 95 8 chr9 111736172 111736415 -6126212 + L2 LINE L2 1566 1829 -1485 1609 138 43 86 chr9 111736431 111736595 -6126032 - AluJb SINE Alu -19 293 146 1780 120 87 14 chr9 111736595 111736871 -6125756 - AluSx SINE Alu -16 296 1 1609 138 43 86 chr9 111736871 111737010 -6125617 - AluJb SINE Alu -166 146 3 300 286 0 42 chr9 111737018 111737137 -6125490 - L1MC4 LINE L1 -1 8041 7928 325 265 0 59 chr9 111737143 111737279 -6125348 - L1MC4 LINE L1 -1 8041 7914 7777 127 43 64 chr9 111737424 111738408 -6124219 - HERVH LTR ERV1 -5408 2305 1276 194 278 111 0 chr9 111738408 111738498 -6124129 + L3b LINE CR1 1135 1234 -349 7777 127 43 64 chr9 111738498 111739070 -6123557 - HERVH LTR ERV1 -6437 1276 694 2848 126 0 21 chr9 111739125 111739594 -6123033 - HERVH LTR ERV1 -7254 459 1 2692 83 106 5 chr9 111739596 111740003 -6122624 - LTR7 LTR ERV1 -2 448 1 1070 90 62 0 chr9 111740007 111740151 -6122476 + AluSg/x SINE Alu 154 306 -6 206 194 0 0 chr9 111740225 111740261 -6122366 - MIR SINE MIR -110 152 117 291 140 0 53 chr9 111742042 111742099 -6120528 - Charlie8 DNA MER1_type -2262 155 102 2064 104 3 54 chr9 111742099 111742416 -6120211 - AluY SINE Alu -8 303 3 438 298 86 26 chr9 111742451 111742753 -6119874 + L1MEd LINE L1 299 618 -5798 459 300 73 42 chr9 111742762 111743032 -6119595 + L1MEd LINE L1 675 956 -5460 2012 175 0 9 chr9 111743032 111743347 -6119280 + AluSx SINE Alu 1 312 0 484 294 54 0 chr9 111743347 111743551 -6119076 + HAL1 LINE L1 1303 1517 -990 1595 183 7 31 chr9 111743591 111743881 -6118746 + AluJb SINE Alu 27 309 -3 307 250 21 71 chr9 111743881 111744021 -6118606 + L1MEd LINE L1 1522 1654 -4772 2320 66 7 3 chr9 111744046 111744335 -6118292 + AluY SINE Alu 1 290 -21 309 87 0 19 chr9 111744335 111744387 -6118240 + AluSq/x SINE Alu 86 132 -171 2110 105 3 10 chr9 111744387 111744691 -6117936 + AluSg SINE Alu 1 302 -8 2260 106 7 0 chr9 111746355 111746647 -6115980 + AluSx SINE Alu 1 294 -18 319 214 114 0 chr9 111746866 111746936 -6115691 - MER5A DNA MER1_type -79 110 33 535 312 172 8 chr9 111746962 111747281 -6115346 + L1 LINE L1 4039 4411 -1735 1753 171 13 32 chr9 111747384 111747693 -6114934 - AluJo SINE Alu -9 303 1 368 280 97 0 chr9 111747694 111747869 -6114758 - L1M4 LINE L1 -751 5395 5204 979 99 0 0 chr9 111747872 111748003 -6114624 - AluSp/q SINE Alu -7 306 176 2157 108 3 10 chr9 111748047 111748342 -6114285 - AluSc SINE Alu -16 293 1 2313 105 0 10 chr9 111748494 111748800 -6113827 - AluSx SINE Alu 0 312 10 2409 77 0 7 chr9 111748879 111749178 -6113449 - AluSc SINE Alu -12 297 1 2193 170 47 36 chr9 111749204 111749469 -6113158 - L1MC1 LINE L1 -6 6327 6053 2097 130 3 3 chr9 111749469 111749761 -6112866 - AluSx SINE Alu -16 296 5 2193 170 47 36 chr9 111749761 111749988 -6112639 - L1MC1 LINE L1 -280 6053 5830 2799 240 100 66 chr9 111750141 111751532 -6111095 - L1MC4 LINE L1 -399 7643 6115 366 323 78 6 chr9 111751597 111751764 -6110863 - L2 LINE L2 -982 2332 2154 1339 264 99 9 chr9 111751819 111752244 -6110383 + L2 LINE L2 2307 2769 -545 670 147 163 14 chr9 111752972 111753025 -6109602 - MER33 DNA MER1_type -2261 363 319 1928 128 7 14 chr9 111753025 111753322 -6109305 - AluSx SINE Alu -17 295 1 670 147 163 14 chr9 111753322 111753485 -6109142 - MER33 DNA MER1_type -2305 319 45 2038 109 3 3 chr9 111753634 111753928 -6108699 - AluSx SINE Alu -18 294 1 209 200 67 0 chr9 111753929 111753974 -6108653 - MIR SINE MIR -102 160 113 397 295 54 30 chr9 111754412 111754578 -6108049 + MIR SINE MIR 82 251 -11 27 49 0 0 chr9 111754966 111755007 -6107620 + AT_rich Low_complexity Low_complexity 1 41 0 318 311 29 0 chr9 111755083 111755186 -6107441 - MIR SINE MIR -79 183 78 206 191 281 22 chr9 111756488 111756577 -6106050 - L2 LINE L2 -1 3312 3201 228 293 90 60 chr9 111759028 111759195 -6103432 + MER5A DNA MER1_type 18 189 0 287 236 93 25 chr9 111762392 111762529 -6100098 - MIR SINE MIR -13 249 52 814 169 52 0 chr9 111762552 111762688 -6099939 - FRAM SINE Alu -14 162 20 219 273 61 50 chr9 111763342 111763441 -6099186 + MIR SINE MIR 35 134 -74 978 156 32 16 chr9 111763459 111763645 -6098982 + MER5A DNA MER1_type 1 189 0 250 261 46 31 chr9 111763719 111763784 -6098843 - L2 LINE L2 -1 3271 3206 222 273 0 0 chr9 111765639 111765694 -6096933 + L3b LINE CR1 1180 1234 -349 1033 202 121 44 chr9 111766190 111766518 -6096109 - MLT1E LTR MaLR -7 586 260 548 208 9 0 chr9 111766554 111766660 -6095967 - MLT1E LTR MaLR -486 107 1 3792 100 2 4 chr9 111767014 111767526 -6095101 + MER9 LTR ERVK 1 511 0 22402 62 11 3 chr9 111767526 111770291 -6092336 + HERVK9 LTR ERVK 1 2786 -3130 12148 58 5 0 chr9 111770291 111771760 -6090867 + HERVK9 LTR ERVK 3711 5186 -730 1497 55 22 0 chr9 111771759 111771942 -6090685 + HERVK9 LTR ERVK 5730 5916 0 * 3730 102 4 4 chr9 111771942 111772453 -6090174 + MER9 LTR ERVK 1 511 0 884 228 87 0 chr9 111772766 111772972 -6089655 - MER58A DNA MER1_type 0 224 1 205 229 43 29 chr9 111773386 111773456 -6089171 + L2 LINE L2 3197 3267 -5 1932 144 0 13 chr9 111773823 111774136 -6088491 - AluSx SINE Alu -3 309 1 223 271 100 0 chr9 111775028 111775098 -6087529 + L2 LINE L2 2394 2470 -844 671 182 168 24 chr9 111775165 111775291 -6087336 + MER34C LTR ERV1 160 267 -318 1698 112 120 4 chr9 111775291 111775567 -6087060 + AluSg SINE Alu 1 308 -2 671 182 168 24 chr9 111775567 111775649 -6086978 + MER34C LTR ERV1 267 398 -187 384 278 7 0 chr9 111775657 111775795 -6086832 + MER57-int LTR ERV1 1096 1190 -3681 438 272 0 7 chr9 111775945 111776054 -6086573 - MER34 LTR ERV1 -446 96 1 543 210 64 89 chr9 111776063 111776181 -6086446 + MER57-int LTR ERV1 1552 1671 -3396 2027 117 3 0 chr9 111776181 111776479 -6086148 - AluSx SINE Alu -13 299 1 543 210 64 89 chr9 111776479 111777156 -6085471 + MER57-int LTR ERV1 1671 2487 -2580 1349 192 40 20 chr9 111777157 111777459 -6085168 + AluJb SINE Alu 1 308 -4 1420 230 41 21 chr9 111777600 111778035 -6084592 + MER57-int LTR ERV1 2469 2912 -2024 2463 221 40 41 chr9 111778042 111778725 -6083902 + MER57-int LTR ERV1 3077 3758 -1178 * 2583 226 67 29 chr9 111778722 111779404 -6083223 + MER57-int LTR ERV1 3385 4092 -779 258 293 85 0 chr9 111779458 111779540 -6083087 + MER70-int LTR ERVL 4578 4666 -357 1951 205 22 25 chr9 111779542 111779942 -6082685 + MER57-int LTR ERV1 6745 7143 -394 1534 128 55 22 chr9 111779944 111780371 -6082256 + LTR54 LTR ERV1 1 510 0 190 247 208 80 chr9 111780375 111780587 -6082040 + L2 LINE L2 2475 2659 -655 180 0 0 0 chr9 111780587 111780607 -6082020 + (TC)n Simple_repeat Simple_repeat 1 20 0 190 247 208 80 chr9 111780607 111780730 -6081897 + L2 LINE L2 2659 2853 -461 745 206 45 40 chr9 111780885 111781084 -6081543 + MER105 DNA DNA 3 202 -2 198 226 94 19 chr9 111781086 111781139 -6081488 + L2 LINE L2 3211 3267 -5 390 261 204 11 chr9 111781178 111781354 -6081273 + L2 LINE L2 2857 3066 -247 231 140 60 0 chr9 111831382 111831432 -6031195 - L1ME LINE L1 -351 5815 5763 772 129 2 48 chr9 111831477 111831522 -6031105 + L1MB3 LINE L1 5265 5311 -860 2532 60 0 7 chr9 111831522 111831821 -6030806 + AluY SINE Alu 1 297 -14 772 129 2 48 chr9 111831821 111831944 -6030683 + L1MB3 LINE L1 5311 5427 -744 928 192 30 0 chr9 111831944 111832111 -6030516 + AluJb SINE Alu 121 292 -20 1658 166 30 37 chr9 111832114 111832409 -6030218 + 7SLRNA srpRNA srpRNA 1 293 -27 248 136 34 0 chr9 111832414 111832473 -6030154 + (CATA)n Simple_repeat Simple_repeat 1 61 0 336 150 0 0 chr9 111832475 111832535 -6030092 + L1MB3 LINE L1 5431 5490 -693 555 223 209 0 chr9 111832535 111832674 -6029953 + MER21B LTR ERV1 328 495 -368 2543 51 0 0 chr9 111832977 111833270 -6029357 - AluY SINE Alu -18 293 1 532 270 33 33 chr9 111833378 111833589 -6029038 - Tigger8 DNA MER2_type -230 436 226 3085 163 56 34 chr9 111833634 111834314 -6028313 + L1MB3 LINE L1 5482 6176 -7 23 68 0 0 chr9 111834323 111834367 -6028260 + AT_rich Low_complexity Low_complexity 1 44 0 2127 128 0 0 chr9 111834367 111834672 -6027955 - AluSx SINE Alu 0 305 1 1059 161 0 28 chr9 111834684 111834864 -6027763 - FRAM SINE Alu -1 175 1 1810 143 47 9 chr9 111835611 111835933 -6026694 + MER2 DNA MER2_type 12 345 0 192 241 121 17 chr9 111836025 111836083 -6026544 - L2 LINE L2 -55 3217 3154 326 262 0 12 chr9 111836269 111836353 -6026274 - MER94 DNA DNA -35 99 17 376 204 237 7 chr9 111837033 111837185 -6025442 - MER5A DNA MER1_type 0 189 3 306 181 69 14 chr9 111837325 111837397 -6025230 - MIR SINE MIR -73 189 114 2504 90 0 3 chr9 111837398 111837710 -6024917 + AluSx SINE Alu 1 311 -1 445 241 48 98 chr9 111837736 111837974 -6024653 + MIR SINE MIR 38 262 0 257 67 44 0 chr9 111837980 111838025 -6024602 + Alu SINE Alu 254 300 0 957 249 130 26 chr9 111838099 111838445 -6024182 + Charlie7 DNA MER1_type 367 748 -1864 777 165 0 0 chr9 111838451 111838566 -6024061 + FLAM_A SINE Alu 1 115 -18 812 288 113 62 chr9 111838824 111839424 -6023203 + L2 LINE L2 2347 2977 -337 205 297 10 89 chr9 111839468 111839569 -6023058 + MIR SINE MIR 51 143 -119 366 296 247 10 chr9 111839638 111839803 -6022824 + L2 LINE L2 2950 3075 -238 1957 125 42 3 chr9 111839803 111840090 -6022537 - AluSx SINE Alu -14 298 1 366 296 247 10 chr9 111840090 111840215 -6022412 + L2 LINE L2 3075 3309 -4 275 324 9 18 chr9 111840678 111840789 -6021838 - L2 LINE L2 -465 2849 2740 1805 168 0 23 chr9 111840789 111841099 -6021528 - AluJb SINE Alu -9 303 1 201 224 288 24 chr9 111841557 111841682 -6020945 + MIR3 SINE MIR 3 160 -48 2285 92 0 23 chr9 111841699 111842005 -6020622 - AluSc SINE Alu -10 299 1 198 152 22 65 chr9 111842402 111842448 -6020179 + MIR3 SINE MIR 162 205 -3 1915 148 10 13 chr9 111842572 111842877 -6019750 + AluJo SINE Alu 1 304 -8 611 115 39 10 chr9 111843421 111843525 -6019102 + FLAM_A SINE Alu 21 127 -15 21 0 0 0 chr9 111843553 111843574 -6019053 + AT_rich Low_complexity Low_complexity 1 21 0 779 183 0 0 chr9 111843766 111843897 -6018730 - AluJb SINE Alu -6 306 176 329 325 44 19 chr9 111843921 111844081 -6018546 - MIR SINE MIR -70 192 29 184 313 156 55 chr9 111844157 111844285 -6018342 + MIR3 SINE MIR 45 185 -23 322 214 0 0 chr9 111845256 111845312 -6017315 - L2 LINE L2 0 3313 3258 2223 112 3 3 chr9 111845921 111846217 -6016410 + AluSx SINE Alu 1 296 -16 2022 137 0 3 chr9 111846233 111846526 -6016101 + AluJb SINE Alu 7 298 -14 414 346 20 10 chr9 111846648 111846828 -6015799 - MIR SINE MIR -10 252 68 1968 111 0 0 chr9 111846828 111847090 -6015537 - AluSx SINE Alu -50 262 1 414 346 20 10 chr9 111847090 111847111 -6015516 - MIR SINE MIR -194 68 49 2284 109 0 0 chr9 111848337 111848630 -6013997 - AluSg1 SINE Alu -16 293 1 1867 125 11 11 chr9 111849015 111849294 -6013333 + AluSx SINE Alu 32 310 -2 311 237 103 67 chr9 111849997 111850221 -6012406 + L1MC4 LINE L1 7654 7885 -157 364 60 34 0 chr9 111850226 111850289 -6012338 + LTR49 LTR ERV1 468 573 -71 2133 122 0 0 chr9 111850297 111850584 -6012043 + AluSx SINE Alu 23 309 -3 307 239 60 60 chr9 111850608 111850725 -6011902 + L1MC5 LINE L1 7792 7908 -53 2041 134 0 26 chr9 111851448 111851755 -6010872 + AluSx SINE Alu 3 301 -11 298 232 42 78 chr9 111852605 111852747 -6009880 + L2 LINE L2 3140 3276 -37 225 115 98 0 chr9 111853224 111853285 -6009342 + CT-rich Low_complexity Low_complexity 2 68 0 565 298 45 25 chr9 111853833 111854031 -6008596 + MIR SINE MIR 61 262 0 843 237 93 0 chr9 111854359 111854574 -6008053 + MIR SINE MIR 28 262 0 1012 185 131 31 chr9 111854717 111854977 -6007650 + AluJb SINE Alu 1 286 -16 301 360 35 35 chr9 111855141 111855369 -6007258 - L1ME LINE L1 -303 5818 5591 393 305 30 15 chr9 111856125 111856256 -6006371 - MIR3 SINE MIR -6 202 70 210 255 16 60 chr9 111856281 111856465 -6006162 + (TATAA)n Simple_repeat Simple_repeat 4 179 0 416 216 39 10 chr9 111857014 111857116 -6005511 - MER58 DNA MER1_type 0 2420 2316 244 185 74 0 chr9 111857126 111857180 -6005447 - MER58 DNA MER1_type -2321 99 42 542 297 193 15 chr9 111857434 111857771 -6004856 - L2 LINE L2 -1 3312 2916 2475 240 88 28 chr9 111857833 111858471 -6004156 - L2 LINE L2 -780 2534 1827 2401 99 3 0 chr9 111858471 111858775 -6003852 + AluSp SINE Alu 1 305 -8 2475 240 88 28 chr9 111858775 111859020 -6003607 - L2 LINE L2 -1487 1827 1598 487 234 108 65 chr9 111859071 111859517 -6003110 - MLT1H LTR MaLR -15 534 1 636 271 47 1 chr9 111859543 111859726 -6002901 - MIR SINE MIR -66 142 1 531 283 106 11 chr9 111860956 111861136 -6001491 + MIR SINE MIR 64 260 -2 596 195 73 24 chr9 111861532 111861696 -6000931 - MER58C DNA MER1_type 0 215 44 564 205 163 32 chr9 111861728 111861918 -6000709 + MLT1F LTR MaLR 14 228 -314 344 158 268 0 chr9 111861968 111862050 -6000577 + MLT1F LTR MaLR 353 456 -111 374 310 55 0 chr9 111862221 111862355 -6000272 - MER31-int LTR ERV1 -494 7043 6927 622 267 155 84 chr9 111862832 111862997 -5999630 - L2 LINE L2 0 3313 3161 1811 27 5 0 chr9 111862997 111863217 -5999410 + L1PA4 LINE L1 5935 6155 0 622 267 155 84 chr9 111863217 111863478 -5999149 - L2 LINE L2 -152 3161 2857 197 226 94 19 chr9 111863517 111863570 -5999057 - L2 LINE L2 -5 3267 3211 759 206 45 40 chr9 111863572 111863771 -5998856 - MER105 DNA DNA -2 202 3 197 247 208 80 chr9 111863926 111864049 -5998578 - L2 LINE L2 -461 2853 2747 180 0 0 0 chr9 111864049 111864069 -5998558 + (GA)n Simple_repeat Simple_repeat 1 20 0 197 247 208 80 chr9 111864069 111864281 -5998346 - L2 LINE L2 -567 2747 2475 1444 131 55 22 chr9 111864285 111864712 -5997915 - LTR54 LTR ERV1 0 510 1 1850 205 22 25 chr9 111864714 111865114 -5997513 - MER31-int LTR ERV1 -394 7143 6745 2424 245 54 16 chr9 111865252 111865934 -5996693 - MER31-int LTR ERV1 -779 4092 3385 2330 221 40 41 chr9 111865931 111866614 -5996013 - MER31-int LTR ERV1 -1178 3758 3077 * 1345 234 41 21 chr9 111866621 111867056 -5995571 - MER31-int LTR ERV1 -2024 2912 2469 1497 192 40 20 chr9 111867197 111867499 -5995128 - AluJb SINE Alu -4 308 1 528 210 67 90 chr9 111867500 111868177 -5994450 - MER31-int LTR ERV1 -2580 2356 1671 2167 117 3 0 chr9 111868177 111868475 -5994152 + AluSx SINE Alu 1 299 -13 528 210 67 90 chr9 111868475 111868593 -5994034 - MER31-int LTR ERV1 -3265 1671 1552 418 272 0 7 chr9 111868602 111868711 -5993916 + MER34 LTR ERV1 1 96 -446 372 294 6 0 chr9 111868855 111868999 -5993628 - MER31-int LTR ERV1 -3675 1980 1096 611 187 168 24 chr9 111869007 111869089 -5993538 - MER34C LTR ERV1 -187 398 329 1838 112 120 4 chr9 111869089 111869365 -5993262 - AluSg SINE Alu -2 308 1 611 187 168 24 chr9 111869365 111869491 -5993136 - MER34C LTR ERV1 -256 329 160 225 271 100 0 chr9 111869558 111869628 -5992999 - L2 LINE L2 -844 2470 2394 2086 144 0 13 chr9 111870520 111870833 -5991794 + AluSx SINE Alu 1 309 -3 208 229 43 29 chr9 111871200 111871270 -5991357 - L2 LINE L2 -5 3267 3197 868 228 87 0 chr9 111871684 111871890 -5990737 + MER58A DNA MER1_type 1 224 0 3759 102 4 4 chr9 111872203 111872714 -5989913 - MER9 LTR ERVK 0 511 1 1425 55 22 0 chr9 111872714 111872897 -5989730 - HERVK9 LTR ERVK 0 5916 5730 * 11483 61 5 0 chr9 111872896 111874365 -5988262 - HERVK9 LTR ERVK -730 5186 3711 920 45 0 0 chr9 111874365 111874477 -5988150 - HERVK9 LTR ERVK -3130 2786 2675 520 200 10 0 chr9 111874477 111874577 -5988050 + AluSg/x SINE Alu 135 235 -77 353 238 41 128 chr9 111874582 111874607 -5988020 + L1ME1 LINE L1 5891 5917 -249 2177 108 0 27 chr9 111874607 111874904 -5987723 - AluSc SINE Alu -20 289 1 353 238 41 128 chr9 111874904 111875050 -5987577 + L1ME1 LINE L1 5917 6047 -119 842 136 113 117 chr9 111875055 111875268 -5987359 - MLT1C LTR MaLR 0 467 179 1134 119 0 0 chr9 111875273 111875458 -5987169 - AluSq SINE Alu 0 313 144 1911 91 0 8 chr9 111875458 111875701 -5986926 - AluSq SINE Alu -72 241 1 776 192 11 11 chr9 111875702 111875879 -5986748 - MLT1C LTR MaLR -213 177 1 434 234 99 0 chr9 111875883 111875994 -5986633 + L1MA10 LINE L1 6205 6326 -8 2020 124 0 49 chr9 111876282 111876589 -5986038 - AluSx SINE Alu 0 312 21 315 270 150 10 chr9 111876951 111877051 -5985576 - L2 LINE L2 0 3313 3200 239 195 0 0 chr9 111877567 111877608 -5985019 - L2 LINE L2 -26 3246 3206 587 338 94 29 chr9 111877988 111878370 -5984257 - L2 LINE L2 -43 3229 2823 2231 112 10 7 chr9 111878387 111878691 -5983936 + AluSx SINE Alu 2 306 -6 336 228 38 0 chr9 111878768 111878847 -5983780 - MIR SINE MIR -92 170 89 284 331 53 35 chr9 111879515 111879684 -5982943 + MIR3 SINE MIR 2 173 -35 232 340 64 0 chr9 111879676 111879770 -5982857 - MIR SINE MIR -139 123 24 * 2593 174 48 57 chr9 111880078 111880557 -5982070 + MER74A LTR ERVL 1 476 -82 2399 53 0 33 chr9 111880557 111880860 -5981767 - AluY SINE Alu -18 293 1 2593 174 48 57 chr9 111880860 111880942 -5981685 + MER74A LTR ERVL 476 557 -1 236 200 73 18 chr9 111881768 111881823 -5980804 - MIR SINE MIR -117 145 88 243 0 0 0 chr9 111882390 111882417 -5980210 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 217 196 36 54 chr9 111882831 111882887 -5979740 - MIR3 SINE MIR -11 197 143 341 307 113 45 chr9 111882959 111883173 -5979454 - MIR SINE MIR -2 260 34 338 320 32 19 chr9 111883608 111883764 -5978863 - MIR3 SINE MIR -7 201 44 2336 119 0 0 chr9 111884022 111884332 -5978295 + AluSx SINE Alu 1 310 -2 1739 163 50 3 chr9 111884590 111884872 -5977755 + AluJb SINE Alu 5 299 -13 265 336 9 35 chr9 111884981 111885097 -5977530 + L2 LINE L2 3160 3272 0 2063 160 0 0 chr9 111885340 111885640 -5976987 + AluSx SINE Alu 1 300 -12 2441 147 108 38 chr9 111885869 111886339 -5976288 + MLT1D LTR MaLR 1 503 -2 1933 188 0 0 chr9 111886374 111886678 -5975949 - AluJo SINE Alu -8 304 1 424 335 32 13 chr9 111886756 111886911 -5975716 + MIR SINE MIR 61 218 -44 1361 106 0 0 chr9 111886948 111887127 -5975500 - AluSg/x SINE Alu -12 300 122 205 322 58 16 chr9 111887238 111887359 -5975268 + MIR SINE MIR 130 255 -7 190 190 121 0 chr9 111887729 111887787 -5974840 - L2 LINE L2 -46 3226 3162 258 81 0 0 chr9 111888239 111888276 -5974351 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 1009 247 82 77 chr9 111888524 111888620 -5974007 - MLT1C LTR MaLR 0 467 373 1850 121 23 0 chr9 111888620 111888876 -5973751 + AluSx SINE Alu 44 305 -7 1009 247 82 77 chr9 111888876 111889244 -5973383 - MLT1C LTR MaLR -94 373 1 1708 240 42 2 chr9 111889813 111890221 -5972406 + L1ME3 LINE L1 5456 5879 -285 1450 189 34 40 chr9 111890251 111890548 -5972079 + AluJo SINE Alu 1 295 -17 209 176 0 20 chr9 111890548 111890599 -5972028 + GA-rich Low_complexity Low_complexity 1 50 0 283 218 30 30 chr9 111890699 111890832 -5971795 + GA-rich Low_complexity Low_complexity 3 135 0 310 245 66 19 chr9 111890832 111890938 -5971689 + L1M4 LINE L1 3073 3183 -2963 420 218 213 9 chr9 111890957 111891146 -5971481 + L1ME3 LINE L1 5927 6156 -6 482 326 79 5 chr9 111891813 111892003 -5970624 + MIR SINE MIR 21 224 -38 326 252 48 10 chr9 111892554 111892657 -5969970 + MIR SINE MIR 59 165 -97 247 212 91 0 chr9 111893019 111893085 -5969542 - L1ME4a LINE L1 -57 6064 5993 1695 135 70 0 chr9 111893174 111893433 -5969194 + AluJb SINE Alu 14 290 -22 254 300 22 0 chr9 111893435 111893525 -5969102 - L1ME4a LINE L1 -272 5849 5758 496 294 39 29 chr9 111893577 111893781 -5968846 - L3 LINE CR1 -91 1486 1281 2103 123 0 41 chr9 111893829 111894146 -5968481 - AluJb SINE Alu -8 304 1 660 213 43 7 chr9 111894259 111894400 -5968227 + MIR SINE MIR 22 167 -95 1659 179 17 10 chr9 111895276 111895578 -5967049 + L1MC1 LINE L1 6025 6328 -5 1715 176 0 17 chr9 111895594 111895914 -5966713 + AluJo SINE Alu 1 315 0 3052 193 3 3 chr9 111895919 111896541 -5966086 + L1P LINE L1 4250 4871 -1275 830 133 0 0 chr9 111896642 111896762 -5965865 + AluSg/x SINE Alu 181 300 -12 441 245 77 39 chr9 111896762 111896917 -5965710 + L1MD2 LINE L1 5956 6138 -50 996 198 28 32 chr9 111896920 111897137 -5965490 + AluJb SINE Alu 84 299 -13 214 374 0 0 chr9 111897545 111897644 -5964983 - MIR3 SINE MIR -49 159 61 651 268 26 42 chr9 111898923 111899188 -5963439 - MIR SINE MIR 0 262 2 299 259 65 100 chr9 111899795 111899965 -5962662 + MIR SINE MIR 88 251 -11 2620 68 0 0 chr9 111900031 111900342 -5962285 + AluY SINE Alu 1 311 0 2299 66 3 66 chr9 111900526 111900846 -5961781 + AluSg SINE Alu 11 310 0 280 267 21 0 chr9 111900847 111900953 -5961674 - MIR SINE MIR -22 186 77 282 225 66 125 chr9 111901169 111901354 -5961273 + MIR SINE MIR 37 207 -55 187 320 123 16 chr9 111901498 111901620 -5961007 + L2 LINE L2 3137 3271 -1 275 273 61 30 chr9 111902559 111902658 -5959969 + L2 LINE L2 3169 3270 -2 450 279 26 74 chr9 111902828 111903057 -5959570 - Charlie8 DNA MER1_type -2192 225 8 2383 53 0 13 chr9 111904391 111904693 -5957934 + AluY SINE Alu 1 298 -13 823 139 0 39 chr9 111904693 111904822 -5957805 - AluJo/FLAM SINE Alu -177 125 2 266 208 0 26 chr9 111904898 111904975 -5957652 + (TATAA)n Simple_repeat Simple_repeat 1 75 0 289 319 135 29 chr9 111905226 111905433 -5957194 + MIR SINE MIR 20 248 -14 34 84 0 0 chr9 111906219 111906302 -5956325 + GC_rich Low_complexity Low_complexity 1 83 0 27 96 0 0 chr9 111906390 111906473 -5956154 + GC_rich Low_complexity Low_complexity 1 83 0 35 41 0 0 chr9 111906538 111906587 -5956040 + GC_rich Low_complexity Low_complexity 1 49 0 255 251 17 46 chr9 111906587 111906762 -5955865 + (CCCCG)n Simple_repeat Simple_repeat 2 171 0 * 280 253 29 12 chr9 111906694 111906864 -5955763 + (CCG)n Simple_repeat Simple_repeat 3 175 0 2263 106 0 0 chr9 111907306 111907609 -5955018 - AluSc SINE Alu -6 303 1 2323 77 0 10 chr9 111908010 111908307 -5954320 + AluSc SINE Alu 1 294 -15 1933 158 3 0 chr9 111908312 111908623 -5954004 + AluJb SINE Alu 1 312 0 2336 81 0 0 chr9 111909056 111909353 -5953274 + AluSx SINE Alu 1 297 -15 288 357 14 14 chr9 111909894 111910034 -5952593 + L2 LINE L2 2923 3062 -251 743 289 12 36 chr9 111910202 111910451 -5952176 - MLT1K LTR MaLR -188 400 158 811 200 6 25 chr9 111910498 111910658 -5951969 + FAM SINE Alu 1 49 0 2038 172 27 19 chr9 111911603 111912015 -5950612 + LTR3 LTR ERVK 1 415 -17 255 119 0 0 chr9 111912038 111912080 -5950547 + HERVK3 LTR ERVK 1 42 -7201 263 271 59 12 chr9 111912211 111912296 -5950331 - MIR SINE MIR -169 93 5 2113 98 7 0 chr9 111912659 111912972 -5949655 - AluSx SINE Alu 0 317 3 918 204 15 5 chr9 111913369 111913575 -5949052 + L1MB3 LINE L1 5935 6142 -41 2642 51 0 0 chr9 111913575 111913886 -5948741 + AluY SINE Alu 1 311 0 271 219 78 0 chr9 111913896 111913960 -5948667 + AluSp SINE Alu 121 189 -114 1442 271 99 16 chr9 111914073 111914637 -5947990 - L1ME LINE L1 -595 5575 5059 1787 174 7 0 chr9 111914637 111914930 -5947697 - AluJo SINE Alu -11 301 7 1442 271 99 16 chr9 111914930 111915433 -5947194 - L1ME LINE L1 -1111 5059 4415 2872 199 23 14 chr9 111915591 111916148 -5946479 + MER68 LTR ERV1 1 562 0 541 256 55 125 chr9 111916416 111916536 -5946091 + L1ME4a LINE L1 5817 5944 -177 1927 123 123 0 chr9 111916536 111916870 -5945757 + L1MB3 LINE L1 5806 6180 -3 541 256 55 125 chr9 111916870 111916988 -5945639 + L1ME4a LINE L1 5944 6028 -93 803 169 0 22 chr9 111916988 111917124 -5945503 - FLAM_C SINE Alu 0 133 1 541 256 55 125 chr9 111917124 111917212 -5945415 + L1ME4a LINE L1 6028 6121 0 2312 84 0 3 chr9 111917213 111917509 -5945118 - AluSx SINE Alu -17 295 1 250 287 99 16 chr9 111917765 111917901 -5944726 + MER5A DNA MER1_type 23 187 -2 291 317 0 20 chr9 111918192 111918293 -5944334 - MIR SINE MIR -110 152 54 391 238 126 47 chr9 111919478 111919692 -5942935 - MLT1C LTR MaLR -231 236 6 215 356 67 0 chr9 111919923 111920058 -5942569 - MIR3 SINE MIR -63 145 2 228 318 28 47 chr9 111920197 111920304 -5942323 - MER5B DNA MER1_type -52 126 22 711 249 188 25 chr9 111920531 111920626 -5942001 - MLT1L LTR MaLR 0 615 537 1946 129 19 13 chr9 111920626 111920936 -5941691 + AluSx SINE Alu 1 312 0 711 249 188 25 chr9 111920936 111921202 -5941425 - MLT1L LTR MaLR -78 537 195 331 284 121 9 chr9 111921325 111921441 -5941186 + L2 LINE L2 3181 3309 -4 228 200 25 62 chr9 111921672 111921752 -5940875 - LTR67 LTR ERVL -3 554 478 4009 189 21 3 chr9 111921765 111922509 -5940118 + L1MB3 LINE L1 5424 6181 -2 1070 284 80 13 chr9 111924103 111924590 -5938037 + L1M4 LINE L1 3329 3782 -2364 2191 100 13 7 chr9 111924590 111924890 -5937737 + AluSx SINE Alu 1 302 -10 1070 284 80 13 chr9 111924890 111924908 -5937719 + L1M4 LINE L1 3782 3797 -2349 1768 149 14 20 chr9 111924908 111925203 -5937424 + AluJo SINE Alu 14 306 -6 1070 284 80 13 chr9 111925203 111925221 -5937406 + L1M4 LINE L1 3797 3888 -2258 808 182 0 21 chr9 111925222 111925365 -5937262 + FLAM_C SINE Alu 1 140 -3 2238 84 0 0 chr9 111925433 111925717 -5936910 + AluSx SINE Alu 1 284 -28 237 261 169 35 chr9 111925724 111925985 -5936642 + L1ME4a LINE L1 5815 6110 -11 492 250 75 27 chr9 111926086 111926274 -5936353 - LTR67 LTR ERVL -9 548 352 1178 229 87 3 chr9 111926606 111926916 -5935711 + MER58B DNA MER1_type 6 341 0 1968 214 23 57 chr9 111927005 111927110 -5935517 + MER34 LTR ERV1 12 119 -423 1956 126 4 0 chr9 111927110 111927456 -5935171 + AluSx SINE Alu 4 350 0 1968 214 23 57 chr9 111927456 111927919 -5934708 + MER34 LTR ERV1 119 538 -4 517 233 25 0 chr9 111928546 111928666 -5933961 + MLT1J2 LTR MaLR 30 152 -298 232 269 0 0 chr9 111928732 111928784 -5933843 + MLT1J1 LTR MaLR 272 323 -123 238 135 39 39 chr9 111928858 111928910 -5933717 + MLT1J1 LTR MaLR 272 323 -123 230 269 0 0 chr9 111928900 111928952 -5933675 + MLT1J1 LTR MaLR 272 323 -123 * 702 217 130 14 chr9 111929150 111929357 -5933270 + MLT1G LTR MaLR 15 245 -345 284 325 16 40 chr9 111930657 111930783 -5931844 + L2 LINE L2 2969 3091 -181 1048 131 12 0 chr9 111930905 111931065 -5931562 - AluJb SINE Alu -14 298 137 440 242 31 16 chr9 111931068 111931196 -5931431 + MIR SINE MIR 62 191 -71 1460 114 5 9 chr9 111931638 111931849 -5930778 + AluJb SINE Alu 88 297 -15 196 320 122 40 chr9 111931871 111932093 -5930534 - L2 LINE L2 -56 3216 2977 249 340 82 14 chr9 111932834 111932981 -5929646 + MIR SINE MIR 71 227 -35 198 0 0 0 chr9 111934720 111934742 -5927885 + (CAG)n Simple_repeat Simple_repeat 1 22 0 272 247 41 0 chr9 111934789 111934862 -5927765 - L3 LINE CR1 -87 1490 1415 207 182 0 0 chr9 111935210 111935243 -5927384 + polypurine Low_complexity Low_complexity 1 33 0 972 157 6 0 chr9 111935848 111936007 -5926620 + FRAM SINE Alu 1 157 -19 374 235 176 8 chr9 111936038 111936157 -5926470 + MIR SINE MIR 2 140 -122 303 228 130 0 chr9 111936207 111936330 -5926297 + LTR16A LTR ERVL 19 157 -293 2160 94 0 0 chr9 111937791 111938079 -5924548 - AluSx SINE Alu -24 288 1 228 35 0 0 chr9 111938307 111938336 -5924291 + (TC)n Simple_repeat Simple_repeat 1 29 0 417 304 77 22 chr9 111938582 111938763 -5923864 - L2 LINE L2 0 3272 3082 254 268 41 24 chr9 111939086 111939209 -5923418 + MLT1F1-int LTR MaLR 1246 1370 -1 999 252 99 45 chr9 111939218 111939714 -5922913 + MLT1F1 LTR MaLR 10 571 -22 279 0 0 0 chr9 111939714 111939745 -5922882 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 999 252 99 45 chr9 111939745 111939768 -5922859 + MLT1F1 LTR MaLR 571 591 -2 2349 96 0 3 chr9 111939842 111940154 -5922473 + AluSq SINE Alu 1 311 -2 2294 91 0 0 chr9 111940846 111941143 -5921484 - AluSx SINE Alu -15 297 1 1458 244 117 34 chr9 111941224 111941695 -5920932 - MLT1J LTR MaLR 0 511 2 281 324 38 0 chr9 111942224 111942329 -5920298 - MLT1J LTR MaLR 0 511 403 810 145 13 23 chr9 111942565 111943044 -5919583 + (TG)n Simple_repeat Simple_repeat 1 474 0 897 236 70 72 chr9 111943260 111943717 -5918910 + MLT1D LTR MaLR 42 497 -8 2229 91 0 23 chr9 111943971 111944278 -5918349 - AluSx SINE Alu -12 300 1 686 88 0 49 chr9 111944278 111944380 -5918247 - AluSg/x SINE Alu -8 301 205 264 243 29 0 chr9 111944718 111944788 -5917839 + L2 LINE L2 3193 3264 -8 1811 153 16 16 chr9 111945052 111945227 -5917400 - AluJb SINE Alu -4 308 131 1596 163 53 27 chr9 111945227 111945528 -5917099 - AluSx SINE Alu -3 309 1 1811 153 16 16 chr9 111945528 111945659 -5916968 - AluJb SINE Alu -180 132 2 464 325 82 4 chr9 111946945 111947188 -5915439 + L2 LINE L2 2817 3078 -194 1214 245 65 26 chr9 111947194 111947578 -5915049 - MLT1C LTR MaLR 0 467 69 1188 114 102 45 chr9 111947578 111947795 -5914832 - MSTA LTR MaLR 0 428 194 2004 94 72 0 chr9 111947795 111948071 -5914556 - AluSx SINE Alu -16 296 1 1188 114 102 45 chr9 111948071 111948098 -5914529 - MSTA LTR MaLR -234 194 170 864 149 75 11 chr9 111948091 111948279 -5914348 + MSTB LTR MaLR 171 370 -56 * 502 133 86 0 chr9 111948301 111948406 -5914221 - MSTA LTR MaLR -257 171 58 200 360 27 0 chr9 111948622 111948697 -5913930 - MIR3 SINE MIR -20 188 112 2065 136 0 13 chr9 111948699 111949000 -5913627 + AluSx SINE Alu 1 297 -15 727 242 108 21 chr9 111949439 111949679 -5912948 + MIR SINE MIR 1 261 -1 241 309 27 27 chr9 111949769 111949879 -5912748 + L2 LINE L2 3163 3272 0 250 242 0 16 chr9 111950445 111950507 -5912120 + MER116 DNA Mariner 2 62 -18 249 361 102 6 chr9 111950557 111950723 -5911904 + MIR SINE MIR 20 201 -61 1633 179 31 0 chr9 111951581 111951872 -5910755 - AluJo SINE Alu -12 300 1 494 319 100 9 chr9 111952322 111952532 -5910095 - MIR SINE MIR -19 243 15 217 289 0 82 chr9 111952747 111952844 -5909783 - L2 LINE L2 -3 3269 3181 333 118 0 0 chr9 111953152 111953203 -5909424 + (TG)n Simple_repeat Simple_repeat 2 52 0 198 103 0 0 chr9 111953373 111953402 -5909225 + (TG)n Simple_repeat Simple_repeat 2 30 0 218 274 59 49 chr9 111954005 111954107 -5908520 - L2 LINE L2 -1 3312 3210 849 189 20 16 chr9 111954107 111954397 -5908230 - MSTD LTR MaLR 0 396 17 184 270 0 0 chr9 111954400 111954437 -5908190 - L2 LINE L2 -99 3214 3178 * 445 275 58 0 chr9 111954421 111954559 -5908068 + MIR SINE MIR 12 157 -105 580 251 183 47 chr9 111954559 111955029 -5907598 - MLT1H LTR MaLR -2 540 3 184 283 0 0 chr9 111955154 111955200 -5907427 + L2 LINE L2 3207 3252 -61 1532 227 19 59 chr9 111955506 111955743 -5906884 + MLT1J2 LTR MaLR 49 252 -198 1141 229 28 0 chr9 111955743 111955961 -5906666 + MER58A DNA MER1_type 1 224 0 1532 227 19 59 chr9 111955961 111956144 -5906483 + MLT1J2 LTR MaLR 252 441 -9 365 270 37 52 chr9 111956498 111956634 -5905993 + MIR SINE MIR 40 177 -65 414 207 0 0 chr9 111957124 111957211 -5905416 + MER3 DNA MER1_type 78 164 -45 1992 109 28 0 chr9 111957219 111957504 -5905123 - AluSx SINE Alu -19 293 1 375 242 75 33 chr9 111958150 111958270 -5904357 + MIR SINE MIR 27 151 -57 357 309 92 26 chr9 111958646 111958798 -5903829 + MIR SINE MIR 88 249 -13 186 43 0 0 chr9 111959407 111959430 -5903197 + (TGGGGG)n Simple_repeat Simple_repeat 1 23 0 249 269 26 13 chr9 111959440 111959518 -5903109 + C-rich Low_complexity Low_complexity 4 82 0 1924 135 3 10 chr9 111959958 111960262 -5902365 - AluJb SINE Alu -10 302 1 394 256 70 26 chr9 111960873 111961029 -5901598 + MIR SINE MIR 52 214 -48 229 264 83 0 chr9 111961189 111961261 -5901366 + L2 LINE L2 3195 3272 0 349 207 0 0 chr9 111962880 111962946 -5899681 + AluS SINE Alu 1 57 -243 240 35 0 0 chr9 111962968 111962997 -5899630 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2187 100 3 10 chr9 111963129 111963440 -5899187 - AluSx SINE Alu -3 309 1 213 212 283 62 chr9 111964686 111964799 -5897828 + MIR SINE MIR 119 256 -6 436 260 99 39 chr9 111965114 111965295 -5897332 + MIR SINE MIR 52 243 -19 2094 118 0 0 chr9 111965315 111965603 -5897024 - AluSx SINE Alu -24 288 1 2294 103 3 0 chr9 111967140 111967451 -5895176 + AluSx SINE Alu 1 312 0 221 371 84 6 chr9 111967468 111967646 -5894981 - MIR SINE MIR -10 252 61 263 372 31 8 chr9 111967728 111967857 -5894770 - MIR3 SINE MIR -62 146 15 348 323 16 0 chr9 111967901 111968025 -5894602 + MER117 DNA MER1_type 69 194 -3 576 253 89 21 chr9 111968871 111969061 -5893566 - MIR SINE MIR -32 230 28 24 0 0 0 chr9 111969407 111969431 -5893196 + AT_rich Low_complexity Low_complexity 1 24 0 2214 95 0 16 chr9 111969456 111969761 -5892866 + AluY SINE Alu 1 300 -11 1609 174 7 3 chr9 111969879 111970202 -5892425 - AluJb SINE Alu 0 324 1 344 280 184 0 chr9 111970317 111970442 -5892185 - L2 LINE L2 -4 3309 3162 2031 126 3 0 chr9 111970446 111970747 -5891880 + AluSx SINE Alu 1 302 -10 758 286 29 35 chr9 111970753 111971046 -5891581 + L1ME1 LINE L1 5874 6162 -4 1967 105 0 4 chr9 111971382 111971649 -5890978 - AluSg SINE Alu -44 266 1 192 330 123 34 chr9 111971649 111971828 -5890799 - L2 LINE L2 -567 2747 2553 624 154 0 64 chr9 111971937 111972047 -5890580 - AluSc SINE Alu -98 211 109 1043 99 0 0 chr9 111972150 111972318 -5890309 - AluSq SINE Alu 0 311 144 1809 91 0 8 chr9 111972318 111972561 -5890066 - AluSq SINE Alu -72 241 1 512 162 18 9 chr9 111972562 111972673 -5889954 - MLT1B LTR MaLR -213 177 66 1022 117 33 56 chr9 111972673 111972853 -5889774 - AluSq SINE Alu -133 180 5 316 174 47 58 chr9 111972869 111972955 -5889672 - L1ME3 LINE L1 -263 5899 5815 279 0 0 0 chr9 111972955 111972986 -5889641 + (TTTTTG)n Simple_repeat Simple_repeat 1 31 0 456 235 103 7 chr9 111973091 111973227 -5889400 + L2 LINE L2 3161 3309 -4 224 245 186 59 chr9 111973551 111973653 -5888974 - L2 LINE L2 -18 3254 3140 2159 106 13 0 chr9 111973681 111973983 -5888644 + AluSx SINE Alu 1 306 -6 203 0 37 0 chr9 111974466 111974493 -5888134 + (ATTG)n Simple_repeat Simple_repeat 2 29 0 415 165 0 21 chr9 111975277 111975374 -5887253 + GA-rich Low_complexity Low_complexity 2 96 0 206 244 0 22 chr9 111975446 111975491 -5887136 - L3b LINE CR1 -8 1575 1532 940 163 0 43 chr9 111975532 111975716 -5886911 + AluJb SINE Alu 136 311 -1 912 113 0 0 chr9 111975761 111975885 -5886742 + AluSq/x SINE Alu 9 132 -180 2141 116 0 0 chr9 111975889 111976182 -5886445 - AluSq SINE Alu -18 295 3 190 240 120 60 chr9 111976360 111976510 -5886117 + MIR SINE MIR 22 180 -82 320 279 12 0 chr9 111976621 111976707 -5885920 + MIR SINE MIR 162 248 -14 1638 166 3 3 chr9 111976713 111977040 -5885587 - AluJb SINE Alu 0 327 1 206 121 0 0 chr9 111977047 111977080 -5885547 + (TTTTTA)n Simple_repeat Simple_repeat 1 33 0 440 212 0 62 chr9 111977161 111977274 -5885353 - MIR SINE MIR -97 165 60 204 97 0 0 chr9 111977744 111977775 -5884852 + (TG)n Simple_repeat Simple_repeat 1 31 0 647 256 105 5 chr9 111977985 111978095 -5884532 + L1ME3 LINE L1 5544 5642 -528 303 28 0 0 chr9 111978095 111978131 -5884496 + (CA)n Simple_repeat Simple_repeat 2 37 0 647 256 105 5 chr9 111978131 111978211 -5884416 + L1ME3 LINE L1 5642 5753 -417 906 217 0 0 chr9 111978211 111978391 -5884236 + AluJb SINE Alu 124 303 -9 384 249 110 52 chr9 111978393 111978474 -5884153 + L1ME3 LINE L1 5760 5835 -327 1708 146 13 39 chr9 111978474 111978782 -5883845 + AluJo SINE Alu 1 300 -12 384 249 110 52 chr9 111978782 111978873 -5883754 + L1ME3 LINE L1 5835 5942 -220 2133 117 7 7 chr9 111978879 111979188 -5883439 + AluY SINE Alu 1 309 -2 1147 135 16 0 chr9 111979190 111979375 -5883252 + AluSg/x SINE Alu 119 306 -4 456 223 61 96 chr9 111979385 111979582 -5883045 + L1ME3 LINE L1 5951 6140 -22 1758 156 0 41 chr9 111979599 111979913 -5882714 + AluJo SINE Alu 1 301 -11 2147 127 0 0 chr9 111979916 111980223 -5882404 + AluSg SINE Alu 1 307 -3 333 276 41 20 chr9 111980505 111980603 -5882024 + L1ME4a LINE L1 6021 6120 -1 287 328 125 0 chr9 111980861 111980989 -5881638 - MIR SINE MIR -48 214 71 325 316 26 19 chr9 111981159 111981314 -5881313 - MIR SINE MIR -92 170 15 471 311 148 31 chr9 111981798 111982055 -5880572 + L1MC4a LINE L1 5543 5829 -1979 2228 155 40 19 chr9 111982126 111982552 -5880075 - L1MD1 LINE L1 0 6242 5808 1764 128 6 66 chr9 111982553 111982873 -5879754 - AluJb SINE Alu 0 312 12 279 237 0 13 chr9 111982876 111982952 -5879675 - L1M4 LINE L1 -1261 4885 4811 2149 96 0 23 chr9 111983094 111983397 -5879230 - AluSx SINE Alu -16 296 1 307 234 26 0 chr9 111983714 111983791 -5878836 + L1ME4a LINE L1 5989 6067 -54 1303 156 221 0 chr9 111983842 111984086 -5878541 + AluJb SINE Alu 3 300 -2 2135 110 7 3 chr9 111984540 111984841 -5877786 - AluJb SINE Alu -10 302 1 2182 80 0 3 chr9 111985352 111985681 -5876946 + AluSg SINE Alu 1 328 0 3325 138 36 78 chr9 111985705 111985748 -5876879 + L1MB3 LINE L1 5448 5491 -692 2214 128 0 0 chr9 111985748 111986060 -5876567 + AluSx SINE Alu 1 312 0 3325 138 36 78 chr9 111986060 111986190 -5876437 + L1MB3 LINE L1 5491 5625 -558 1482 170 0 75 chr9 111986190 111986496 -5876131 + AluJb SINE Alu 2 284 -28 3325 138 36 78 chr9 111986496 111986512 -5876115 + L1MB3 LINE L1 5625 5640 -543 2027 111 17 0 chr9 111986512 111986800 -5875827 + AluSp SINE Alu 1 293 -20 3325 138 36 78 chr9 111986800 111987331 -5875296 + L1MB3 LINE L1 5640 6140 -43 823 143 82 20 chr9 111987331 111987478 -5875149 + FRAM SINE Alu 1 154 -22 331 77 0 19 chr9 111987479 111987531 -5875096 + L1MB2 LINE L1 6117 6167 -4 21 0 0 0 chr9 111987531 111987552 -5875075 + AT_rich Low_complexity Low_complexity 1 21 0 328 120 20 0 chr9 111987657 111987707 -5874920 - Alu SINE Alu -251 51 1 643 202 31 31 chr9 111988831 111988960 -5873667 - AluSg/x SINE Alu -15 297 169 1916 139 0 22 chr9 111989078 111989395 -5873232 - AluJo SINE Alu -2 310 1 242 313 61 0 chr9 111989672 111989771 -5872856 - MIR SINE MIR -68 140 36 * 481 292 201 9 chr9 111989768 111990097 -5872530 - L2 LINE L2 -1 3312 2921 3367 221 31 38 chr9 111990638 111990852 -5871775 + L1MD2 LINE L1 5099 5313 -1046 2116 116 0 3 chr9 111990852 111991146 -5871481 + AluSx SINE Alu 1 293 -19 3367 221 31 38 chr9 111991146 111991965 -5870662 + L1MD2 LINE L1 5313 6131 -228 1383 129 14 0 chr9 111991965 111992174 -5870453 + AluJb SINE Alu 84 295 -17 965 263 9 0 chr9 111992185 111992409 -5870218 + L1MD2 LINE L1 6120 6345 -14 472 316 20 5 chr9 111992654 111992850 -5869777 + MLT1J LTR MaLR 75 273 -238 232 122 0 49 chr9 111992873 111992914 -5869713 + MLT1J1 LTR MaLR 291 329 -117 263 48 0 24 chr9 111993057 111993099 -5869528 + (CAA)n Simple_repeat Simple_repeat 1 41 0 283 257 64 36 chr9 111993114 111993254 -5869373 + L1ME4a LINE L1 5974 6117 -4 809 160 0 0 chr9 111994935 111995060 -5867567 - FLAM_C SINE Alu -18 125 1 1841 117 7 15 chr9 111995528 111995802 -5866825 - AluSx SINE Alu -40 272 1 1110 279 50 12 chr9 111996071 111996472 -5866155 + MER113 DNA MER1_type? 20 435 -86 1380 237 56 11 chr9 111996537 111997076 -5865551 + HsTC2c DNA Tc2 93 726 -3 214 213 49 0 chr9 111997204 111997265 -5865362 - MER5A DNA MER1_type -18 171 108 1781 109 60 14 chr9 111997274 111997557 -5865070 - AluJb SINE Alu -16 296 1 826 118 0 62 chr9 112000002 112000146 -5862481 - FRAM SINE Alu -16 160 26 498 260 124 0 chr9 112000681 112000858 -5861769 + MER63A DNA MER1_type 12 210 0 322 259 0 12 chr9 112000943 112001028 -5861599 + L2 LINE L2 3230 3313 0 407 221 26 18 chr9 112201844 112201957 -5660670 + HAL1 LINE L1 1243 1356 -1151 2336 227 166 30 chr9 112201973 112202029 -5660598 + HAL1 LINE L1 1441 1488 -1019 2014 100 0 0 chr9 112202029 112202278 -5660349 - AluSx SINE Alu -12 300 52 2336 227 166 30 chr9 112202278 112202379 -5660248 + HAL1 LINE L1 1488 1574 -933 1569 188 10 52 chr9 112202379 112202688 -5659939 - AluJo SINE Alu -16 296 1 2336 227 166 30 chr9 112202688 112203457 -5659170 + HAL1 LINE L1 1574 2494 -13 228 281 0 11 chr9 112203472 112203561 -5659066 - L1MC4 LINE L1 -1340 6702 6615 345 176 0 0 chr9 112203569 112203620 -5659007 + L1MC4 LINE L1 6658 6708 -1334 366 206 39 49 chr9 112203951 112204053 -5658574 + FAM SINE Alu 32 132 -43 2446 82 3 0 chr9 112204578 112204882 -5657745 + AluSx SINE Alu 1 305 -7 1814 157 23 7 chr9 112205606 112205911 -5656716 - AluSx SINE Alu -2 310 1 285 257 0 145 chr9 112206137 112206172 -5656455 + MER91A DNA MER1_type 67 105 -91 991 182 70 125 chr9 112206172 112206557 -5656070 - MLT1A1 LTR MaLR -1 364 1 285 257 0 145 chr9 112206557 112206673 -5655954 + MER91A DNA MER1_type 105 196 0 1991 169 3 0 chr9 112206887 112207189 -5655438 + AluJo SINE Alu 1 303 -9 2359 96 0 19 chr9 112207390 112207702 -5654925 - AluSq SINE Alu -7 306 1 215 252 387 8 chr9 112207890 112208009 -5654618 - MER5A DNA MER1_type 0 189 26 381 319 47 26 chr9 112208022 112208213 -5654414 + MIR SINE MIR 3 197 -65 243 256 58 0 chr9 112208422 112208508 -5654119 + L2 LINE L2 3180 3270 -2 1788 186 6 6 chr9 112209708 112210020 -5652607 + AluJo SINE Alu 1 312 0 777 85 43 0 chr9 112210020 112210161 -5652466 + GA-rich Low_complexity Low_complexity 4 150 0 2220 123 3 0 chr9 112210167 112210469 -5652158 + AluSg SINE Alu 5 396 0 218 281 34 0 chr9 112210469 112210558 -5652069 + GA-rich Low_complexity Low_complexity 1 180 0 948 134 0 108 chr9 112210910 112211096 -5651531 + AluJo SINE Alu 1 166 -146 405 171 0 13 chr9 112211096 112211172 -5651455 + THE1B LTR MaLR 290 364 0 289 310 55 35 chr9 112211202 112211347 -5651280 - MIR3 SINE MIR -1 207 60 211 279 96 29 chr9 112211449 112211553 -5651074 + MIR3 SINE MIR 96 206 -2 770 160 0 0 chr9 112212365 112212484 -5650143 - FLAM_C SINE Alu -13 120 2 2116 136 0 3 chr9 112212516 112212829 -5649798 + AluSx SINE Alu 1 312 0 2220 95 7 3 chr9 112213148 112213433 -5649194 - AluSg SINE Alu -24 286 1 191 339 83 33 chr9 112214037 112214217 -5648410 - L2 LINE L2 -255 3017 2829 2338 86 0 0 chr9 112214296 112214587 -5648040 - AluSc SINE Alu -18 291 1 309 189 99 72 chr9 112214821 112214932 -5647695 - L1MC4a LINE L1 -1856 5952 5839 453 275 12 50 chr9 112215100 112215260 -5647367 + MER103 DNA DNA 12 165 -1 2622 109 0 3 chr9 112215940 112216316 -5646311 + THE1C LTR MaLR 1 375 0 392 218 177 14 chr9 112216510 112216657 -5645970 - MIR3 SINE MIR -3 205 35 286 336 36 29 chr9 112216678 112216815 -5645812 + MIR SINE MIR 124 261 -1 238 250 0 0 chr9 112217935 112217991 -5644636 + MIR SINE MIR 85 140 -68 366 344 48 8 chr9 112218408 112218533 -5644094 + MIR3 SINE MIR 14 143 -65 451 349 8 5 chr9 112218667 112218801 -5643826 + MIR SINE MIR 16 149 -100 2072 140 85 18 chr9 112218801 112219202 -5643425 + MSTA LTR MaLR 1 428 0 451 349 8 5 chr9 112219202 112219238 -5643389 + MIR SINE MIR 149 183 -66 422 271 25 16 chr9 112219776 112219898 -5642729 - MIR3 SINE MIR -1 207 85 674 249 30 27 chr9 112220004 112220247 -5642380 - MIR SINE MIR -14 248 6 320 208 226 19 chr9 112220394 112220500 -5642127 + L2 LINE L2 3139 3266 -6 917 274 4 9 chr9 112220730 112220960 -5641667 - MIR SINE MIR -3 259 31 215 355 104 38 chr9 112222027 112222498 -5640129 - L3 LINE CR1 -750 827 326 759 249 64 91 chr9 112222806 112223323 -5639304 - L1MC5 LINE L1 -31 7930 7428 283 138 15 31 chr9 112223726 112223791 -5638836 + GA-rich Low_complexity Low_complexity 4 67 0 934 184 0 12 chr9 112223793 112223938 -5638689 + FRAM SINE Alu 1 145 -157 432 37 0 0 chr9 112223938 112223992 -5638635 + (GGAA)n Simple_repeat Simple_repeat 1 54 0 934 184 0 12 chr9 112223992 112224014 -5638613 + FRAM SINE Alu 145 166 0 1545 177 37 7 chr9 112224125 112224396 -5638231 + AluJb SINE Alu 12 290 -22 1417 233 41 49 chr9 112226690 112227136 -5635491 - MER113 DNA MER1_type? -3 518 75 2231 107 0 10 chr9 112227136 112227434 -5635193 + AluSx SINE Alu 5 299 -13 1417 233 41 49 chr9 112227434 112227477 -5635150 - MER113 DNA MER1_type? -446 75 33 1678 162 46 8 chr9 112228336 112228443 -5634184 - L1MB3 LINE L1 0 6183 6081 2323 109 0 0 chr9 112228443 112228745 -5633882 - AluSx SINE Alu -10 302 1 1678 162 46 8 chr9 112228745 112229008 -5633619 - L1MB3 LINE L1 -102 6081 5799 1733 176 27 20 chr9 112229668 112229818 -5632809 + MLT1B LTR MaLR 29 176 -220 2178 111 10 0 chr9 112229818 112230107 -5632520 + AluSx SINE Alu 1 292 -20 1733 176 27 20 chr9 112230107 112230309 -5632318 + MLT1B LTR MaLR 176 388 -8 280 276 207 21 chr9 112230591 112230736 -5631891 + MIR SINE MIR 79 250 -12 414 267 111 18 chr9 112230754 112230971 -5631656 - L2 LINE L2 -2 3311 3075 181 250 50 0 chr9 112231075 112231135 -5631492 - L2 LINE L2 -3186 128 66 204 302 0 0 chr9 112231278 112231331 -5631296 + (TAG)n Simple_repeat Simple_repeat 1 53 0 722 164 0 164 chr9 112232346 112232430 -5630197 - MLT1D LTR MaLR 0 505 472 2164 95 25 0 chr9 112232430 112232724 -5629903 + AluSx SINE Alu 1 301 0 722 164 0 164 chr9 112232724 112232845 -5629782 - MLT1D LTR MaLR -33 472 333 243 272 53 35 chr9 112233444 112233558 -5629069 + MLT1H LTR MaLR 423 538 -11 497 200 0 52 chr9 112234138 112234217 -5628410 - MER63 DNA MER1_type 0 1060 987 3368 138 14 32 chr9 112234217 112234781 -5627846 + MLT2B3 LTR ERVL 1 554 0 497 200 0 52 chr9 112234781 112234816 -5627811 - MER63 DNA MER1_type -73 987 952 1751 196 27 7 chr9 112234817 112235118 -5627509 + AluJb SINE Alu 1 307 -5 416 113 0 50 chr9 112235274 112235354 -5627273 - AluS SINE Alu -11 301 226 2192 112 10 0 chr9 112235404 112235700 -5626927 - AluSq SINE Alu -14 299 1 236 309 53 0 chr9 112235817 112235911 -5626716 + MIR3 SINE MIR 78 176 -32 2093 98 3 21 chr9 112237558 112237869 -5624758 - AluSx SINE Alu 0 306 1 518 285 15 30 chr9 112237996 112238202 -5624425 + MIR SINE MIR 42 242 -20 183 298 24 24 chr9 112238329 112238413 -5624214 + L2 LINE L2 3162 3245 -27 * 211 203 85 17 chr9 112238404 112238463 -5624164 - MIR SINE MIR -36 226 164 1692 182 10 10 chr9 112238596 112238887 -5623740 + AluJb SINE Alu 1 291 -21 195 129 0 0 chr9 112238887 112238918 -5623709 + (GGGAA)n Simple_repeat Simple_repeat 1 31 0 725 148 0 8 chr9 112239020 112239142 -5623485 + AluSp/q SINE Alu 186 306 -7 414 328 73 50 chr9 112239266 112239303 -5623324 + L2 LINE L2 2855 2890 -382 2325 175 34 6 chr9 112239303 112239771 -5622856 - L1MB5 LINE L1 -9 6165 5685 414 328 73 50 chr9 112239771 112240132 -5622495 + L2 LINE L2 2890 3262 -10 2338 115 0 3 chr9 112240338 112240652 -5621975 + AluSq SINE Alu 1 313 0 236 278 256 0 chr9 112241543 112241633 -5620994 + L2 LINE L2 3195 3307 -6 828 40 44 45 chr9 112241945 112242203 -5620424 + (CA)n Simple_repeat Simple_repeat 1 257 0 350 164 15 0 chr9 112242297 112242364 -5620263 - MIR SINE MIR -74 134 67 2433 105 0 0 chr9 112243374 112243680 -5618947 - AluSq SINE Alu -7 306 1 825 286 56 38 chr9 112243684 112244128 -5618499 - L1MC4 LINE L1 0 8042 7591 310 250 11 43 chr9 112244131 112244223 -5618404 + L1MC4 LINE L1 6614 6702 -1340 * 331 159 43 29 chr9 112244204 112244273 -5618354 - L1MCa LINE L1 -4362 2064 1995 * 370 295 0 32 chr9 112244223 112244318 -5618309 + L1MC4 LINE L1 6612 6703 -1339 1069 173 32 5 chr9 112244319 112244539 -5618088 - L1MD3 LINE L1 -13 7982 7757 447 263 153 0 chr9 112244615 112244752 -5617875 - MIR SINE MIR -74 188 31 189 94 0 0 chr9 112244780 112244812 -5617815 + (TC)n Simple_repeat Simple_repeat 1 32 0 2312 102 7 0 chr9 112244999 112245304 -5617323 + AluSx SINE Alu 1 307 -5 470 322 29 10 chr9 112245333 112245541 -5617086 - MIR SINE MIR -48 214 3 304 184 114 113 chr9 112246310 112246395 -5616232 + MIR SINE MIR 39 122 -140 2152 128 3 3 chr9 112246395 112246699 -5615928 - AluSq SINE Alu -9 304 1 304 184 114 113 chr9 112246699 112246807 -5615820 + MIR SINE MIR 122 247 -15 215 61 30 0 chr9 112246867 112246900 -5615727 + (TTCC)n Simple_repeat Simple_repeat 4 37 0 2050 126 43 7 chr9 112247205 112247506 -5615121 - AluJb SINE Alu 0 312 1 547 257 57 23 chr9 112247514 112247689 -5614938 - MIR SINE MIR -70 192 12 287 25 25 0 chr9 112248674 112248714 -5613913 + (GA)n Simple_repeat Simple_repeat 1 41 0 1819 150 0 34 chr9 112248753 112249070 -5613557 - AluJo SINE Alu 0 307 1 298 277 134 0 chr9 112249206 112249318 -5613309 - L2 LINE L2 -2 3311 3185 326 247 0 0 chr9 112250136 112250209 -5612418 + L2 LINE L2 3241 3313 0 1670 161 39 29 chr9 112250321 112250642 -5611985 + AluJb SINE Alu 1 324 0 235 211 171 0 chr9 112250835 112250911 -5611716 - MER117 DNA MER1_type -54 143 55 330 329 27 34 chr9 112252109 112252255 -5610372 - MIR3 SINE MIR -10 198 54 313 265 154 6 chr9 112252280 112252435 -5610192 + MIR SINE MIR 16 206 -2 496 258 131 20 chr9 112252791 112252989 -5609638 - MIR SINE MIR -41 221 2 483 210 83 7 chr9 112255067 112255215 -5607412 - MIR SINE MIR 0 262 102 209 189 0 0 chr9 112255435 112255472 -5607155 + L2 LINE L2 3264 3300 -13 190 283 91 40 chr9 112255511 112255610 -5607017 + L2 LINE L2 3146 3249 -23 2141 82 39 26 chr9 112256177 112256482 -5606145 - AluSx SINE Alu -3 309 1 202 355 109 22 chr9 112256601 112256784 -5605843 + MIR SINE MIR 37 235 -27 311 326 14 50 chr9 112256792 112256933 -5605694 - MIR SINE MIR -28 234 99 276 312 81 36 chr9 112256993 112257132 -5605495 - MIR3 SINE MIR -18 190 57 866 278 42 4 chr9 112257152 112257393 -5605234 - MIR SINE MIR -11 251 2 200 248 107 44 chr9 112257792 112257926 -5604701 + MIR SINE MIR 3 121 -87 180 0 0 0 chr9 112258155 112258175 -5604452 + (TCTG)n Simple_repeat Simple_repeat 1 20 0 459 286 29 7 chr9 112258933 112259073 -5603554 - MIR3 SINE MIR -50 158 16 194 329 25 13 chr9 112259719 112259798 -5602829 - MIR SINE MIR -110 152 73 457 283 115 24 chr9 112259804 112260021 -5602606 + MIR SINE MIR 20 262 0 21 0 0 0 chr9 112261319 112261340 -5601287 + GC_rich Low_complexity Low_complexity 1 21 0 40 79 0 0 chr9 112261474 112261563 -5601064 + GC_rich Low_complexity Low_complexity 1 89 0 213 132 0 0 chr9 112261586 112261624 -5601003 + (CGG)n Simple_repeat Simple_repeat 1 38 0 516 106 0 0 chr9 112262045 112262139 -5600488 + (TG)n Simple_repeat Simple_repeat 2 95 0 21 0 0 0 chr9 112262391 112262412 -5600215 + GC_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 112262782 112262804 -5599823 + GC_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 112263321 112263342 -5599285 + AT_rich Low_complexity Low_complexity 1 21 0 29 47 0 0 chr9 112264401 112264444 -5598183 + AT_rich Low_complexity Low_complexity 1 43 0 526 296 13 25 chr9 112267025 112267184 -5595443 + MIR SINE MIR 105 261 -1 344 287 35 56 chr9 112267180 112267323 -5595304 - MIR SINE MIR -110 152 13 * 195 100 0 0 chr9 112267355 112267385 -5595242 + (CAGGG)n Simple_repeat Simple_repeat 4 33 0 213 121 0 0 chr9 112267650 112267683 -5594944 + (GGGA)n Simple_repeat Simple_repeat 1 33 0 226 305 110 0 chr9 112269891 112269973 -5592654 + MER5A DNA MER1_type 22 112 -77 452 309 40 64 chr9 112270276 112270525 -5592102 + MIR SINE MIR 20 262 0 198 298 48 12 chr9 112270702 112270786 -5591841 + MIR SINE MIR 104 190 -72 260 235 11 169 chr9 112271226 112271409 -5591218 + L2 LINE L2 2932 3085 -187 268 239 312 7 chr9 112271482 112271620 -5591007 + MIR SINE MIR 80 259 -3 414 260 130 0 chr9 112271642 112271765 -5590862 + L2 LINE L2 3134 3272 0 2448 72 0 0 chr9 112271828 112272134 -5590493 - AluY SINE Alu -5 306 1 428 243 5 74 chr9 112272743 112272984 -5589643 + (CGGA)n Simple_repeat Simple_repeat 1 224 0 195 129 0 0 chr9 112273005 112273036 -5589591 + (CGGA)n Simple_repeat Simple_repeat 3 33 0 256 283 0 33 chr9 112273055 112273147 -5589480 + (CGGA)n Simple_repeat Simple_repeat 1 89 0 180 176 0 0 chr9 112273165 112273199 -5589428 + (CAGA)n Simple_repeat Simple_repeat 2 35 0 180 111 0 0 chr9 112273308 112273335 -5589292 + (CGGA)n Simple_repeat Simple_repeat 3 29 0 201 74 0 0 chr9 112273416 112273443 -5589184 + (CGGA)n Simple_repeat Simple_repeat 3 29 0 180 111 0 0 chr9 112273466 112273493 -5589134 + (CGGA)n Simple_repeat Simple_repeat 3 29 0 305 377 26 21 chr9 112273566 112273743 -5588884 + MIR SINE MIR 71 251 -11 2224 88 0 7 chr9 112273743 112274038 -5588589 + AluSx SINE Alu 1 293 -19 305 377 26 21 chr9 112274038 112274051 -5588576 + MIR SINE MIR 251 262 0 259 122 0 0 chr9 112275115 112275164 -5587463 - L1MB5 LINE L1 0 6174 6126 932 120 0 0 chr9 112275176 112275301 -5587326 + FLAM_C SINE Alu 5 129 -4 3265 208 27 21 chr9 112275314 112276061 -5586566 - L1MB5 LINE L1 -26 6148 5398 2007 134 10 16 chr9 112276079 112276392 -5586235 - AluSx SINE Alu -1 311 1 1564 201 3 6 chr9 112276394 112276747 -5585880 - L1MB5 LINE L1 -985 5161 4810 219 36 0 0 chr9 112276751 112276779 -5585848 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2151 85 4 0 chr9 112276781 112277062 -5585565 - AluSx SINE Alu -30 282 1 243 299 10 77 chr9 112277086 112277243 -5585384 - MIR SINE MIR -50 212 70 211 215 190 13 chr9 112277443 112277522 -5585105 + L2 LINE L2 3164 3256 -16 1970 117 0 68 chr9 112277763 112278088 -5584539 + AluSx SINE Alu 1 303 -9 284 277 12 21 chr9 112278104 112278212 -5584415 - MIR3 SINE MIR -54 154 46 264 291 100 27 chr9 112278830 112278940 -5583687 - MIR SINE MIR -70 138 21 297 297 69 0 chr9 112279660 112279761 -5582866 + MIR3 SINE MIR 68 175 -33 183 186 0 0 chr9 112279784 112279827 -5582800 + GA-rich Low_complexity Low_complexity 2 44 0 1584 135 4 0 chr9 112280193 112280423 -5582204 - AluJb SINE Alu -16 296 66 2206 105 20 0 chr9 112280424 112280720 -5581907 - AluSx SINE Alu -10 302 1 630 315 58 12 chr9 112280764 112281005 -5581622 - MIR SINE MIR -3 259 8 485 280 42 0 chr9 112281937 112282105 -5580522 + MER5B DNA MER1_type 4 178 0 185 348 76 0 chr9 112282768 112282860 -5579767 + MIR SINE MIR 74 172 -90 207 204 0 0 chr9 112282933 112282987 -5579640 + (TTGG)n Simple_repeat Simple_repeat 2 55 0 2172 92 7 0 chr9 112283747 112284039 -5578588 + AluSp SINE Alu 1 294 -19 208 275 0 59 chr9 112284723 112284827 -5577800 + CT-rich Low_complexity Low_complexity 1 97 0 540 106 0 0 chr9 112284928 112285013 -5577614 + (GGA)n Simple_repeat Simple_repeat 1 85 0 229 255 0 0 chr9 112285258 112285309 -5577318 + L3 LINE CR1 1416 1466 -111 194 346 56 37 chr9 112285935 112286042 -5576585 - L2 LINE L2 -18 3254 3146 378 175 0 0 chr9 112286657 112286737 -5575890 + GA-rich Low_complexity Low_complexity 2 81 0 321 280 85 8 chr9 112286984 112287102 -5575525 - MIR3 SINE MIR -14 194 68 251 293 12 0 chr9 112287564 112287646 -5574981 + MIR SINE MIR 47 129 -133 266 314 110 8 chr9 112287910 112288028 -5574599 - L2 LINE L2 -1 3271 3142 233 204 0 0 chr9 112288100 112288154 -5574473 - MER34 LTR ERV1 -72 470 417 1250 135 16 0 chr9 112288170 112288362 -5574265 - AluJb SINE Alu 0 312 118 647 223 51 65 chr9 112288413 112288749 -5573878 - MER39 LTR ERV1 -126 581 55 2015 110 3 30 chr9 112288753 112289052 -5573575 - AluSx SINE Alu -20 292 2 2066 100 18 4 chr9 112289251 112289555 -5573072 + AluSg SINE Alu 1 308 0 330 280 13 0 chr9 112289932 112290007 -5572620 - HAL1 LINE L1 -1606 901 826 2228 105 3 0 chr9 112290171 112290475 -5572152 + AluSg SINE Alu 1 305 -5 2160 70 17 40 chr9 112290475 112290776 -5571851 + AluY SINE Alu 1 294 -17 372 275 19 81 chr9 112291091 112291251 -5571376 - HAL1 LINE L1 -2350 157 8 2120 268 76 41 chr9 112291639 112292661 -5569966 + L1ME LINE L1 6 1063 -5007 308 47 0 0 chr9 112292714 112292757 -5569870 + MADE1 DNA Mariner 1 43 -37 474 205 0 0 chr9 112292798 112292881 -5569746 - FRAM/FAM SINE Alu -95 81 1 364 286 13 7 chr9 112292904 112293066 -5569561 + L1ME LINE L1 1206 1416 -4712 577 321 13 51 chr9 112293339 112293442 -5569185 + MIR SINE MIR 23 128 -134 2083 122 3 13 chr9 112293442 112293611 -5569016 - AluSx SINE Alu -9 303 137 2269 68 3 7 chr9 112293611 112293926 -5568701 - AluY SINE Alu 0 311 1 2083 122 3 13 chr9 112293926 112294060 -5568567 - AluSx SINE Alu -175 137 3 577 321 13 51 chr9 112294060 112294193 -5568434 + MIR SINE MIR 128 250 -12 2284 84 0 0 chr9 112294463 112294750 -5567877 - AluSx SINE Alu -15 297 11 1529 152 62 8 chr9 112294797 112295088 -5567539 + AluJo SINE Alu 15 319 0 410 294 76 72 chr9 112295089 112295351 -5567276 + L2 LINE L2 3010 3272 0 873 263 83 30 chr9 112296976 112297371 -5565256 - MLT1C LTR MaLR 0 467 52 328 345 64 79 chr9 112297632 112297899 -5564728 + L1ME4a LINE L1 5805 6067 -54 2459 59 0 7 chr9 112298416 112298723 -5563904 - AluY SINE Alu -6 305 1 757 221 51 24 chr9 112298767 112298840 -5563787 + MER63 DNA MER1_type 801 871 -190 1926 118 34 0 chr9 112298840 112299136 -5563491 + AluSx SINE Alu 1 306 -6 757 221 51 24 chr9 112299136 112299316 -5563311 + MER63 DNA MER1_type 871 1061 0 207 0 0 0 chr9 112299432 112299455 -5563172 + (TA)n Simple_repeat Simple_repeat 1 23 0 1854 151 17 0 chr9 112299455 112299747 -5562880 - AluJb SINE Alu -15 297 1 2408 100 0 0 chr9 112299776 112300087 -5562540 - AluSx SINE Alu 0 312 2 2493 45 0 10 chr9 112300477 112300785 -5561842 + AluY SINE Alu 1 305 -6 232 108 0 62 chr9 112300895 112300960 -5561667 + (CAT)n Simple_repeat Simple_repeat 2 62 0 1597 146 0 24 chr9 112300997 112301283 -5561344 + AluJb SINE Alu 37 316 0 826 278 31 24 chr9 112301283 112301538 -5561089 - MIR SINE MIR -4 258 2 263 351 121 6 chr9 112301602 112301767 -5560860 - MIR SINE MIR -55 207 24 417 281 140 6 chr9 112302717 112302881 -5559746 + MER5A DNA MER1_type 4 189 0 343 198 47 47 chr9 112302951 112303037 -5559590 - L2 LINE L2 -19 3294 3209 1832 174 0 7 chr9 112303181 112303475 -5559152 + AluJb SINE Alu 1 292 -20 1029 102 0 0 chr9 112303627 112303754 -5558873 - FLAM_C SINE Alu -16 127 1 1758 197 59 0 chr9 112303755 112304126 -5558501 - L1MB5 LINE L1 -38 6136 5744 2488 80 3 0 chr9 112304153 112304465 -5558162 - AluSp SINE Alu 0 313 1 2364 145 28 52 chr9 112305653 112305874 -5556753 - L1MB3 LINE L1 -7 6176 5951 2433 109 0 0 chr9 112305874 112306186 -5556441 - AluSx SINE Alu 0 312 1 2364 145 28 52 chr9 112306186 112306467 -5556160 - L1MB3 LINE L1 -232 5951 5686 2335 115 0 3 chr9 112306499 112306811 -5555816 + AluSx SINE Alu 2 312 0 2556 70 0 13 chr9 112307371 112307684 -5554943 + AluY SINE Alu 1 309 -2 253 287 56 37 chr9 112307698 112307806 -5554821 - MIR SINE MIR -17 245 136 28 0 0 0 chr9 112307813 112307841 -5554786 + AT_rich Low_complexity Low_complexity 1 28 0 814 108 0 0 chr9 112307856 112307967 -5554660 - FLAM_C SINE Alu -32 111 1 427 243 57 43 chr9 112307973 112308113 -5554514 - MIR SINE MIR -118 144 3 342 115 0 0 chr9 112309073 112309125 -5553502 + (CA)n Simple_repeat Simple_repeat 2 53 0 361 262 184 21 chr9 112309331 112309472 -5553155 + MIR SINE MIR 87 250 -12 2418 107 0 0 chr9 112309486 112309796 -5552831 - AluSq SINE Alu 0 313 4 416 346 17 6 chr9 112310028 112310207 -5552420 - L1ME1 LINE L1 -5 6161 5981 2136 241 23 23 chr9 112310218 112310777 -5551850 - L1ME1 LINE L1 -140 6026 5468 2255 60 0 60 chr9 112310806 112311142 -5551485 - AluY SINE Alu 0 318 1 595 251 36 51 chr9 112311391 112311586 -5551041 - MIR SINE MIR -69 193 2 329 341 163 5 chr9 112311597 112311966 -5550661 - L2 LINE L2 -532 2782 2356 2471 85 0 3 chr9 112311969 112312274 -5550353 + AluSq SINE Alu 3 306 -7 2288 103 7 10 chr9 112312705 112313015 -5549612 - AluSc SINE Alu 0 309 1 434 321 108 25 chr9 112313571 112313811 -5548816 + L3 LINE CR1 1316 1575 -2 274 261 33 33 chr9 112314041 112314133 -5548494 + MIR3 SINE MIR 101 192 -16 2310 106 0 3 chr9 112314155 112314458 -5548169 + AluSx SINE Alu 1 302 -10 2251 104 10 3 chr9 112316137 112316436 -5546191 + AluSx SINE Alu 1 301 -11 1469 164 9 4 chr9 112316437 112316669 -5545958 + AluSg/x SINE Alu 76 308 -2 497 286 55 33 chr9 112316767 112316949 -5545678 + MIR SINE MIR 12 197 -65 359 269 113 43 chr9 112316967 112317108 -5545519 - L2 LINE L2 0 3313 3163 1862 126 33 11 chr9 112317667 112317937 -5544690 - AluJb SINE Alu -16 296 21 305 218 90 9 chr9 112319509 112319659 -5542968 + MER3 DNA MER1_type 1 209 0 2675 44 0 0 chr9 112319985 112320283 -5542344 - AluY SINE Alu -13 298 1 699 186 0 0 chr9 112320333 112320494 -5542133 + (TG)n Simple_repeat Simple_repeat 1 161 0 313 214 43 0 chr9 112320494 112320564 -5542063 + L1MCa LINE L1 1996 2068 -4358 700 191 3 3 chr9 112320575 112320886 -5541741 + (TG)n Simple_repeat Simple_repeat 1 311 0 575 296 13 56 chr9 112321138 112321276 -5541351 + MIR SINE MIR 38 164 -98 2075 175 9 40 chr9 112321276 112321673 -5540954 + L1MB5 LINE L1 5744 6127 -47 2165 87 11 0 chr9 112321673 112321938 -5540689 - AluSx SINE Alu -44 268 1 2075 175 9 40 chr9 112321938 112321985 -5540642 + L1MB5 LINE L1 6127 6174 0 575 296 13 56 chr9 112321985 112322079 -5540548 + MIR SINE MIR 164 260 -2 228 286 43 0 chr9 112322950 112323020 -5539607 - MIR SINE MIR -59 149 77 2170 87 0 7 chr9 112323480 112323756 -5538871 + AluSq SINE Alu 37 310 -3 241 276 191 0 chr9 112323777 112323882 -5538745 + L2 LINE L2 3163 3287 -26 227 315 0 0 chr9 112325214 112325268 -5537359 - MIR SINE MIR -61 147 94 1192 229 18 3 chr9 112325381 112325665 -5536962 - MER33 DNA MER1_type -24 300 13 2214 89 72 10 chr9 112325722 112326014 -5536613 + AluSx SINE Alu 1 310 -2 708 174 83 0 chr9 112327008 112327140 -5535487 - AluJb SINE Alu -21 291 149 222 239 0 60 chr9 112327145 112327212 -5535415 + MER5B DNA MER1_type 115 177 -1 2297 115 0 0 chr9 112327808 112328104 -5534523 + AluSx SINE Alu 1 296 -16 3799 157 8 30 chr9 112328107 112328834 -5533793 - L1MB2 LINE L1 -15 6156 5446 2133 108 3 10 chr9 112328973 112329270 -5533357 + AluSx SINE Alu 1 295 -17 457 286 116 54 chr9 112329432 112329691 -5532936 + L2 LINE L2 2996 3270 -2 324 70 0 0 chr9 112329692 112329735 -5532892 + (CA)n Simple_repeat Simple_repeat 1 43 0 303 252 80 52 chr9 112330572 112330747 -5531880 - L1MD2 LINE L1 -6 7802 6165 2483 83 3 0 chr9 112330751 112331051 -5531576 - AluSp SINE Alu -12 301 1 552 281 45 36 chr9 112331117 112331341 -5531286 - MIR SINE MIR -9 253 28 1809 97 121 8 chr9 112331639 112331896 -5530731 + AluSg SINE Alu 1 286 -24 470 180 18 36 chr9 112331928 112332039 -5530588 + ORSL DNA AcHobo 164 272 -3 1721 149 14 51 chr9 112332600 112332924 -5529703 - AluJb SINE Alu 0 313 1 235 347 82 0 chr9 112333066 112333164 -5529463 + L2 LINE L2 3200 3305 -8 1742 146 6 56 chr9 112333387 112333708 -5528919 + AluJo SINE Alu 1 305 -7 1908 167 79 17 chr9 112333803 112334210 -5528417 - MSTB1 LTR MaLR 0 432 1 540 272 41 31 chr9 112334222 112334417 -5528210 - MIR SINE MIR -39 223 27 2386 95 3 0 chr9 112334599 112334893 -5527734 - AluSq SINE Alu -16 297 3 213 200 0 0 chr9 112335242 112335277 -5527350 + (CTCA)n Simple_repeat Simple_repeat 1 35 0 1636 194 29 49 chr9 112337459 112337867 -5524760 + MLT1C LTR MaLR 68 467 0 211 248 121 78 chr9 112338047 112338188 -5524439 + MIR SINE MIR 24 170 -92 540 261 43 29 chr9 112338208 112338415 -5524212 - L2 LINE L2 -1 3312 3103 743 91 0 9 chr9 112338972 112339082 -5523545 + MSTA LTR MaLR 1 109 -319 * 907 170 0 0 chr9 112339074 112339227 -5523400 + MER77 LTR ERV1 449 601 -4 198 235 136 12 chr9 112340801 112340882 -5521745 - MIR SINE MIR -163 99 9 334 219 10 52 chr9 112340952 112341048 -5521579 - MIR3 SINE MIR -13 195 104 1369 194 115 56 chr9 112341837 112342352 -5520275 + LTR55 LTR ERV 1 545 -3 252 86 0 0 chr9 112343080 112343115 -5519512 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 520 306 38 16 chr9 112343405 112343591 -5519036 - MIR SINE MIR -23 239 50 1721 32 0 9 chr9 112343664 112343880 -5518747 + L1PA3 LINE L1 5942 6155 0 2165 92 4 0 chr9 112343912 112344227 -5518400 + AluSp SINE Alu 11 326 0 2200 131 0 3 chr9 112344844 112345150 -5517477 - AluSx SINE Alu -7 305 1 2219 164 65 107 chr9 112345161 112345757 -5516870 - L1MB5 LINE L1 -15 6159 5598 1637 127 0 0 chr9 112345757 112345986 -5516641 - AluSg/x SINE Alu -8 302 74 533 309 98 25 chr9 112346137 112346373 -5516254 - MIR SINE MIR -4 258 6 246 243 92 91 chr9 112346689 112346898 -5515729 - MIR SINE MIR -1 261 44 765 85 0 0 chr9 112346898 112347004 -5515623 + (TA)n Simple_repeat Simple_repeat 2 107 0 2528 60 0 0 chr9 112347004 112347304 -5515323 - AluY SINE Alu -11 300 1 325 156 89 11 chr9 112348123 112348213 -5514414 - MIR SINE MIR -67 141 45 236 303 40 0 chr9 112350309 112350385 -5512242 + MIR SINE MIR 41 119 -89 219 158 26 0 chr9 112350431 112350469 -5512158 + L2 LINE L2 3255 3293 -20 1127 196 20 117 chr9 112350820 112351223 -5511404 - MLT1A1 LTR MaLR -1 364 1 4591 154 23 24 chr9 112351703 112352098 -5510529 + MER6 DNA MER2_type 1 395 -470 2289 98 3 0 chr9 112352098 112352384 -5510243 + AluSp SINE Alu 1 287 -26 4591 154 23 24 chr9 112352384 112352854 -5509773 + MER6 DNA MER2_type 395 865 0 1908 170 0 25 chr9 112352919 112353236 -5509391 + AluJb SINE Alu 2 310 -2 337 310 57 32 chr9 112353447 112353605 -5509022 + MIR SINE MIR 23 184 -78 385 286 92 9 chr9 112354519 112354736 -5507891 - L1ME3A LINE L1 -123 6047 5813 449 95 40 0 chr9 112354740 112354814 -5507813 + T-rich Low_complexity Low_complexity 4 80 0 1918 180 10 0 chr9 112354824 112355124 -5507503 - AluJb SINE Alu -9 303 1 913 225 9 28 chr9 112355132 112355350 -5507277 - MER20 DNA MER1_type -4 215 2 1210 262 85 12 chr9 112355351 112355852 -5506775 - L1ME3A LINE L1 -353 5809 5239 329 336 37 15 chr9 112355938 112356072 -5506555 + L2 LINE L2 3172 3308 -5 1525 207 36 22 chr9 112356585 112356942 -5505685 + MLT1A1 LTR MaLR 4 365 0 463 145 0 12 chr9 112357032 112357115 -5505512 + L1MC1 LINE L1 6247 6328 -5 1371 153 44 34 chr9 112357242 112357562 -5505065 - L1MB8 LINE L1 -12 6166 5844 550 320 35 9 chr9 112358491 112358722 -5503905 + MIR SINE MIR 14 250 -12 2060 142 3 7 chr9 112360781 112361083 -5501544 + AluJb SINE Alu 1 301 -11 508 313 21 0 chr9 112361224 112361368 -5501259 + MIR SINE MIR 116 262 0 563 264 0 7 chr9 112361426 112361581 -5501046 - L1ME3 LINE L1 -1 6161 6008 185 365 44 0 chr9 112361821 112361958 -5500669 + L2 LINE L2 2575 2717 -597 654 274 70 111 chr9 112362045 112362312 -5500315 - MLT1K LTR MaLR -77 511 274 2240 96 3 13 chr9 112362312 112362613 -5500014 - AluSx SINE Alu -12 300 3 654 274 70 111 chr9 112362613 112362859 -5499768 - MLT1K LTR MaLR -314 274 19 27 0 0 0 chr9 112363163 112363190 -5499437 + AT_rich Low_complexity Low_complexity 1 27 0 2809 181 76 16 chr9 112363236 112363843 -5498784 - L1MB3 LINE L1 -2 6181 5539 266 270 153 15 chr9 112364299 112364436 -5498191 + MIR3 SINE MIR 3 158 -50 264 283 167 36 chr9 112364500 112364638 -5497989 - MIR SINE MIR -47 215 60 1998 121 37 0 chr9 112364679 112364971 -5497656 + AluSx SINE Alu 1 302 0 423 307 8 28 chr9 112364980 112365156 -5497471 - MIR3 SINE MIR -31 177 3 727 259 49 21 chr9 112366520 112366763 -5495864 + MER102b DNA MER1_type 92 341 0 223 349 151 23 chr9 112366874 112367046 -5495581 - MIR SINE MIR -50 212 19 261 264 14 0 chr9 112367698 112367770 -5494857 - MIR SINE MIR -94 168 96 434 257 9 9 chr9 112368888 112368997 -5493630 + L2 LINE L2 3183 3291 -22 625 361 26 42 chr9 112369143 112369572 -5493055 + L3 LINE CR1 939 1360 -217 560 234 105 12 chr9 112369672 112369843 -5492784 - MIR SINE MIR -62 200 14 301 366 38 5 chr9 112370027 112370213 -5492414 - MIR SINE MIR -54 208 17 2214 123 0 0 chr9 112370405 112370698 -5491929 + AluSx SINE Alu 7 299 -13 415 317 68 42 chr9 112371746 112371949 -5490678 - MIR SINE MIR -35 227 25 241 221 26 78 chr9 112371954 112372031 -5490596 - L2 LINE L2 -20 3293 3221 263 263 119 25 chr9 112372343 112372461 -5490166 + L2 LINE L2 3182 3310 -3 1044 238 104 63 chr9 112372619 112372688 -5489939 - MLT1D LTR MaLR -2 503 438 2221 113 13 0 chr9 112372688 112372989 -5489638 + AluSq SINE Alu 1 305 -8 1044 238 104 63 chr9 112372989 112373381 -5489246 - MLT1D LTR MaLR -67 438 5 2281 119 0 0 chr9 112373577 112373871 -5488756 + AluSq SINE Alu 1 294 -19 27 0 0 0 chr9 112373913 112373940 -5488687 + AT_rich Low_complexity Low_complexity 1 27 0 1109 108 108 0 chr9 112373940 112374126 -5488501 - L1MA2 LINE L1 0 6304 6099 190 268 216 0 chr9 112375251 112375348 -5487279 - MIR SINE MIR -64 144 27 249 260 7 143 chr9 112375989 112376143 -5486484 - MER5A DNA MER1_type -20 169 37 * 400 250 15 52 chr9 112376028 112376164 -5486463 + MER5A DNA MER1_type 55 185 -4 643 220 190 9 chr9 112376279 112376511 -5486116 + ORSL DNA AcHobo 1 274 -1 792 239 81 81 chr9 112376883 112377217 -5485410 - MER102b DNA MER1_type -3 338 5 315 297 0 45 chr9 112377243 112377354 -5485273 + MIR SINE MIR 86 191 -71 1188 193 161 3 chr9 112377382 112377492 -5485135 + L1MD2 LINE L1 6007 6098 -261 300 70 0 0 chr9 112377492 112377535 -5485092 + (CA)n Simple_repeat Simple_repeat 1 43 0 1188 193 161 3 chr9 112377535 112377729 -5484898 + L1MD2 LINE L1 6098 6359 0 273 343 41 64 chr9 112379290 112379509 -5483118 + MIR SINE MIR 6 219 -43 343 254 45 27 chr9 112379833 112379943 -5482684 + MIR SINE MIR 76 187 -75 957 172 0 0 chr9 112380069 112380249 -5482378 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 1008 151 0 0 chr9 112380264 112380317 -5482310 + (TGGA)n Simple_repeat Simple_repeat 1 232 0 1008 151 0 0 chr9 112380317 112380496 -5482131 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 1367 92 0 4 chr9 112380658 112381187 -5481440 + (TGGA)n Simple_repeat Simple_repeat 1 527 0 314 200 142 8 chr9 112381466 112381483 -5481144 - L1MA10 LINE L1 0 6334 6318 438 156 62 192 chr9 112381483 112381586 -5481041 - L1ME2 LINE L1 -7 6155 6092 1524 180 8 4 chr9 112381586 112381841 -5480786 + AluJo SINE Alu 1 256 -56 438 156 62 192 chr9 112381841 112381940 -5480687 - L1ME2 LINE L1 -70 6092 5982 228 326 51 0 chr9 112382651 112382749 -5479878 - L2 LINE L2 -54 3218 3116 2205 124 17 0 chr9 112382985 112383284 -5479343 - AluSx SINE Alu -8 304 1 312 221 12 25 chr9 112383521 112383618 -5479009 + MIR SINE MIR 29 129 -79 2364 113 3 3 chr9 112384300 112384611 -5478016 - AluSq SINE Alu -2 311 1 242 297 55 0 chr9 112384681 112384772 -5477855 - L1ME2 LINE L1 -1921 5887 5792 865 150 0 0 chr9 112385226 112385359 -5477268 - FLAM_C SINE Alu 0 133 1 2014 117 7 43 chr9 112385541 112385840 -5476787 + AluSx SINE Alu 1 288 -24 238 163 0 41 chr9 112385940 112385989 -5476638 + Alu SINE Alu 243 289 -10 2421 60 0 0 chr9 112386008 112386313 -5476314 - AluY SINE Alu 0 305 1 426 157 39 111 chr9 112386313 112386388 -5476239 - MER69 DNA AcHobo -227 2299 2239 2204 128 0 0 chr9 112386388 112386685 -5475942 - AluSx SINE Alu -15 297 1 426 157 39 111 chr9 112386685 112386762 -5475865 - MER69 DNA AcHobo -287 2239 2158 1996 184 87 132 chr9 112386766 112386984 -5475643 - L1MD2 LINE L1 -4 6355 6129 195 42 0 0 chr9 112386984 112387008 -5475619 + (TG)n Simple_repeat Simple_repeat 1 24 0 1996 184 87 132 chr9 112387008 112387583 -5475044 - L1MD2 LINE L1 -230 6129 5604 2637 57 0 10 chr9 112387583 112387897 -5474730 - AluY SINE Alu 0 311 1 1996 184 87 132 chr9 112387897 112387923 -5474704 - L1MD2 LINE L1 -755 5604 5578 * 17965 22 1 0 chr9 112387911 112390885 -5471742 + L1HS LINE L1 3179 6154 -1 2456 84 3 0 chr9 112390910 112391218 -5471409 + AluY SINE Alu 1 309 -2 1286 184 64 11 chr9 112391222 112391504 -5471123 - L1MD2 LINE L1 -650 5592 5296 473 184 167 0 chr9 112391516 112391630 -5470997 - AluJb SINE Alu -179 133 1 2270 102 3 10 chr9 112391637 112391940 -5470687 - AluSq SINE Alu -12 301 1 1573 214 19 54 chr9 112391969 112392432 -5470195 - L1MD2 LINE L1 -824 5322 4876 206 294 15 0 chr9 112392535 112392603 -5470024 + CT-rich Low_complexity Low_complexity 1 69 0 373 286 80 25 chr9 112393784 112393983 -5468644 - Charlie8 DNA MER1_type -2193 224 15 214 176 39 0 chr9 112393996 112394047 -5468580 + MIR SINE MIR 81 133 -75 1230 149 0 21 chr9 112394134 112394322 -5468305 + AluJo SINE Alu 3 186 -126 543 270 135 0 chr9 112394692 112394892 -5467735 - MLT1D LTR MaLR 0 505 279 263 85 0 21 chr9 112394914 112394961 -5467666 - MADE1 DNA Mariner 0 80 35 2225 132 3 0 chr9 112394965 112395275 -5467352 + AluSx SINE Alu 1 311 -1 327 263 107 72 chr9 112395539 112395696 -5466931 - L1MC4 LINE L1 -730 7231 7081 2578 72 3 0 chr9 112395696 112396000 -5466627 + AluY SINE Alu 1 305 -6 327 263 107 72 chr9 112396000 112396795 -5465832 - L1MC4 LINE L1 -880 7081 6240 1993 138 3 3 chr9 112396795 112397115 -5465512 + AluSx SINE Alu 1 320 0 327 263 107 72 chr9 112397115 112397419 -5465208 - L1MC4 LINE L1 -1721 6240 5948 1420 205 21 21 chr9 112397476 112397754 -5464873 - MER89 LTR ERV1 -222 337 57 2360 115 0 0 chr9 112397754 112398059 -5464568 - AluSx SINE Alu -7 305 1 1420 205 21 21 chr9 112398059 112398117 -5464510 - MER89 LTR ERV1 -501 58 1 216 205 0 0 chr9 112398232 112398271 -5464356 + MIR SINE MIR 126 164 -98 1260 181 140 51 chr9 112398335 112398759 -5463868 - MER31B LTR ERV1 0 543 6 2214 78 39 4 chr9 112399869 112400150 -5462477 + AluSx SINE Alu 1 291 -21 2315 85 0 0 chr9 112400171 112400488 -5462139 + AluY SINE Alu 1 317 0 262 269 92 40 chr9 112400726 112400882 -5461745 - MIR3 SINE MIR -45 163 40 2285 110 7 0 chr9 112401285 112401595 -5461032 - AluSq SINE Alu -1 312 1 855 218 67 28 chr9 112401840 112402125 -5460502 - MER39 LTR ERV1 0 707 412 203 222 0 0 chr9 112402287 112402323 -5460304 + L2 LINE L2 3226 3261 -11 205 372 117 0 chr9 112402569 112402714 -5459913 - MIR SINE MIR -3 259 98 1835 140 68 0 chr9 112402807 112403100 -5459527 + AluSq SINE Alu 1 313 0 276 236 14 0 chr9 112403341 112403413 -5459214 - MER69 DNA AcHobo -3 2523 2451 1904 157 3 3 chr9 112405856 112406161 -5456466 - AluJb SINE Alu -7 305 1 184 246 246 0 chr9 112406421 112406490 -5456137 + L2 LINE L2 3183 3268 -4 237 330 0 32 chr9 112406572 112406666 -5455961 - MIR SINE MIR 0 262 172 233 188 0 42 chr9 112407132 112407187 -5455440 - MIR SINE MIR -61 147 102 507 297 110 0 chr9 112407293 112407475 -5455152 + L2 LINE L2 3112 3313 0 326 233 58 0 chr9 112408199 112408285 -5454342 + MIR3 SINE MIR 110 200 -8 421 307 94 24 chr9 112408579 112408791 -5453836 + MIR SINE MIR 24 250 -12 196 307 33 73 chr9 112408842 112408992 -5453635 - L2 LINE L2 -6 3266 3123 240 300 0 39 chr9 112409612 112409742 -5452885 + L1ME4a LINE L1 5992 6116 -5 309 418 12 6 chr9 112409749 112409919 -5452708 - L3b LINE CR1 -120 1463 1293 2127 125 0 3 chr9 112410921 112411226 -5451401 + AluSx SINE Alu 1 304 -8 1304 129 57 14 chr9 112411885 112412095 -5450532 - AluJb SINE Alu -7 305 87 2258 99 10 13 chr9 112412648 112412961 -5449666 - AluSx SINE Alu 0 312 1 434 332 30 40 chr9 112412966 112413165 -5449462 - MIR SINE MIR -48 214 18 183 276 276 0 chr9 112413558 112413645 -5448982 + MIR SINE MIR 117 227 -35 274 315 48 62 chr9 112413713 112413777 -5448850 - MER5A DNA MER1_type -1 188 125 2123 116 0 7 chr9 112413777 112414078 -5448549 + AluSx SINE Alu 1 299 -13 274 315 48 62 chr9 112414078 112414159 -5448468 - MER5A DNA MER1_type -64 125 45 1456 170 36 75 chr9 112414338 112414685 -5447942 - MLT1A2 LTR MaLR 0 374 41 786 162 0 0 chr9 112414685 112414829 -5447798 + FLAM_C SINE Alu 1 144 0 1456 170 36 75 chr9 112414829 112414869 -5447758 - MLT1A2 LTR MaLR -333 41 1 381 313 28 0 chr9 112414869 112415013 -5447614 - L3 LINE CR1 -197 1380 1233 21 0 0 0 chr9 112415187 112415208 -5447419 + AT_rich Low_complexity Low_complexity 1 21 0 368 310 249 19 chr9 112415336 112415549 -5447078 - MIR SINE MIR 0 262 1 1898 146 36 3 chr9 112415701 112416002 -5446625 - AluJb SINE Alu -1 311 1 927 123 0 0 chr9 112416201 112416355 -5446272 + (TCCA)n Simple_repeat Simple_repeat 2 155 0 420 293 32 13 chr9 112419341 112419498 -5443129 - MER117 DNA MER1_type -37 160 1 3964 158 64 15 chr9 112419614 112419790 -5442837 + L1MB7 LINE L1 5127 5293 -891 2297 105 0 0 chr9 112419790 112420096 -5442531 + AluSq SINE Alu 3 308 -5 2195 128 0 3 chr9 112420096 112420409 -5442218 + AluSx SINE Alu 1 312 0 3964 158 64 15 chr9 112420409 112420430 -5442197 + L1MB7 LINE L1 5293 5312 -872 2298 87 7 3 chr9 112420430 112420739 -5441888 + AluY SINE Alu 1 310 -1 3964 158 64 15 chr9 112420739 112421554 -5441073 + L1MB7 LINE L1 5312 6184 0 360 248 29 9 chr9 112422012 112422117 -5440510 + MIR SINE MIR 34 140 -122 522 0 0 0 chr9 112422970 112423028 -5439599 + (CA)n Simple_repeat Simple_repeat 2 59 0 333 283 28 28 chr9 112423823 112423929 -5438698 - L1ME3A LINE L1 -222 5948 5843 429 194 65 0 chr9 112423947 112424040 -5438587 + MER3 DNA MER1_type 1 99 -110 2365 94 0 0 chr9 112424055 112424363 -5438264 - AluSg SINE Alu -2 308 1 1652 189 20 0 chr9 112424373 112424679 -5437948 - AluJo SINE Alu 0 312 1 529 228 0 0 chr9 112424679 112424793 -5437834 + MER3 DNA MER1_type 87 200 -9 526 355 86 6 chr9 112424823 112425302 -5437325 - L1ME3A LINE L1 -338 5832 5316 180 351 11 43 chr9 112425474 112425568 -5437059 + L2 LINE L2 3218 3308 -5 262 267 69 55 chr9 112425710 112426130 -5436497 + L1M4 LINE L1 2738 3163 -2983 498 315 20 0 chr9 112426255 112426424 -5436203 + MIR3 SINE MIR 35 208 0 2211 103 0 3 chr9 112426713 112427013 -5435614 + AluSq SINE Alu 1 299 -14 411 296 53 12 chr9 112427629 112427810 -5434817 + MIR SINE MIR 24 214 -48 254 330 8 68 chr9 112428302 112428420 -5434207 - L2 LINE L2 0 3313 3203 266 233 33 0 chr9 112428661 112428721 -5433906 + L2 LINE L2 3252 3313 0 1417 223 93 32 chr9 112428971 112429411 -5433216 - MLT1C LTR MaLR 0 467 1 1189 149 50 137 chr9 112429487 112429638 -5432989 + L1MA10 LINE L1 5947 6110 -224 2396 69 0 3 chr9 112429638 112429942 -5432685 + AluSq SINE Alu 1 303 -10 1189 149 50 137 chr9 112429942 112430077 -5432550 + L1MA10 LINE L1 6110 6187 -147 1839 156 14 0 chr9 112430077 112430365 -5432262 - AluJb SINE Alu -20 292 1 1189 149 50 137 chr9 112430365 112430499 -5432128 + L1MA10 LINE L1 6187 6331 -3 1412 135 20 29 chr9 112430522 112430767 -5431860 + AluJo SINE Alu 36 278 -34 2228 109 10 0 chr9 112431094 112431398 -5431229 - AluSx SINE Alu -5 307 1 200 149 21 0 chr9 112431808 112431855 -5430772 + (CTGGGG)n Simple_repeat Simple_repeat 3 50 0 202 270 68 54 chr9 112432236 112432310 -5430317 + MIR SINE MIR 70 144 -64 359 300 66 53 chr9 112432729 112432956 -5429671 + L2 LINE L2 3083 3312 -1 200 35 35 0 chr9 112434096 112434125 -5428502 + (TCC)n Simple_repeat Simple_repeat 3 32 0 2270 78 0 0 chr9 112434857 112435165 -5427462 - AluSc SINE Alu 0 308 1 2269 97 0 13 chr9 112435170 112435479 -5427148 - AluY SINE Alu -6 305 1 1045 96 0 0 chr9 112435479 112435614 -5427013 - AluSq/x SINE Alu -177 135 1 524 302 19 33 chr9 112435615 112435830 -5426797 + L2 LINE L2 2273 2484 -830 259 386 33 19 chr9 112435889 112436099 -5426528 + MIR SINE MIR 50 262 0 208 265 78 29 chr9 112436828 112436930 -5425697 - L3 LINE CR1 0 1577 1471 515 211 14 8 chr9 112438579 112438937 -5423690 + GA-rich Low_complexity Low_complexity 1 360 0 664 167 58 6 chr9 112439454 112439610 -5423017 + MER96B DNA MER1_type? 6 169 -248 24 0 0 0 chr9 112440574 112440598 -5422029 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr9 112441851 112441873 -5420754 + GC_rich Low_complexity Low_complexity 1 22 0 410 0 20 0 chr9 112442904 112442954 -5419673 + (CA)n Simple_repeat Simple_repeat 1 51 0 464 92 0 26 chr9 112445476 112445552 -5417075 + (GGAA)n Simple_repeat Simple_repeat 3 76 0 328 266 65 16 chr9 112449026 112449150 -5413477 - MIR SINE MIR -59 149 20 221 322 21 0 chr9 112449538 112449681 -5412946 + (CA)n Simple_repeat Simple_repeat 2 147 0 305 316 228 0 chr9 112450285 112450478 -5412149 + MIR SINE MIR 14 250 -12 22 0 0 0 chr9 112452031 112452053 -5410574 + GC_rich Low_complexity Low_complexity 1 22 0 484 276 70 6 chr9 112457912 112458068 -5404559 - MIR SINE MIR -50 212 47 248 244 244 8 chr9 112458261 112458392 -5404235 + MIR SINE MIR 46 207 -55 186 310 0 0 chr9 112458429 112458487 -5404140 - MIR SINE MIR -69 139 82 347 322 84 40 chr9 112460055 112460257 -5402370 - L1M4 LINE L1 -952 5194 4984 660 259 25 0 chr9 112460529 112460691 -5401936 - MIR SINE MIR -66 196 31 260 248 39 47 chr9 112462114 112462243 -5400384 + MIR3 SINE MIR 2 129 -79 485 320 142 34 chr9 112462345 112462761 -5399866 + L3 LINE CR1 463 923 -654 265 213 277 11 chr9 112462740 112462834 -5399793 + MIR SINE MIR 33 151 -111 * 219 320 64 0 chr9 112463861 112463939 -5398688 - MIR SINE MIR -178 84 2 187 293 32 0 chr9 112464043 112464114 -5398513 + MIR SINE MIR 66 141 -67 361 270 46 40 chr9 112466588 112466657 -5395970 - L2 LINE L2 0 3313 3246 686 226 73 64 chr9 112466657 112466891 -5395736 + MER46A DNA MER2_type 1 236 0 361 270 46 40 chr9 112466891 112466973 -5395654 - L2 LINE L2 -67 3246 3161 218 263 76 17 chr9 112467375 112467493 -5395134 - L2 LINE L2 -1285 2029 1905 325 295 104 11 chr9 112467928 112468111 -5394516 - MIR SINE MIR -23 239 40 600 215 121 20 chr9 112469044 112469193 -5393434 - AluJo SINE Alu -2 300 137 2372 100 0 0 chr9 112470984 112471285 -5391342 - AluSg SINE Alu -9 301 1 829 108 0 0 chr9 112472001 112472112 -5390515 - AluJo SINE Alu -180 132 22 299 220 17 0 chr9 112473905 112473964 -5388663 + L2 LINE L2 3213 3272 0 1388 149 138 35 chr9 112474287 112474548 -5388079 - AluJo SINE Alu -24 288 1 2251 100 0 0 chr9 112474777 112475068 -5387559 + AluSq SINE Alu 1 291 -22 682 265 107 44 chr9 112478316 112478879 -5383748 + L2 LINE L2 2607 3310 -3 21 0 0 0 chr9 112481244 112481265 -5381362 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr9 112481785 112481814 -5380813 + AT_rich Low_complexity Low_complexity 1 29 0 313 328 167 20 chr9 112483471 112483669 -5378958 - MIR SINE MIR -29 233 7 196 257 81 68 chr9 112484091 112484165 -5378462 + MIR SINE MIR 16 90 -118 2193 119 3 0 chr9 112484211 112484505 -5378122 + AluSx SINE Alu 1 295 -17 244 291 63 0 chr9 112484556 112484635 -5377992 - MIR SINE MIR -77 185 102 2463 92 10 0 chr9 112484638 112484942 -5377685 + AluSc SINE Alu 1 307 -2 323 198 208 0 chr9 112485042 112485148 -5377479 - MIR SINE MIR -133 129 2 2459 96 0 6 chr9 112485247 112485559 -5377068 + AluSg SINE Alu 1 310 0 441 301 103 20 chr9 112485883 112486086 -5376541 + MIR SINE MIR 7 226 -36 2491 52 0 0 chr9 112488212 112488502 -5374125 + AluY SINE Alu 21 310 -1 219 356 23 8 chr9 112489291 112489423 -5373204 + MIR SINE MIR 119 252 -10 262 260 32 11 chr9 112489665 112489769 -5372858 - MIR SINE MIR -75 133 28 2385 78 3 7 chr9 112489803 112490111 -5372516 - AluYb8 SINE Alu -11 307 1 2325 92 0 0 chr9 112490551 112490855 -5371772 + AluSx SINE Alu 3 306 0 239 234 0 0 chr9 112490996 112491043 -5371584 + GA-rich Low_complexity Low_complexity 2 48 0 22 0 0 0 chr9 112491163 112491185 -5371442 + GC_rich Low_complexity Low_complexity 1 22 0 1584 186 17 59 chr9 112491976 112492380 -5370247 - MLT1B LTR MaLR 0 390 4 188 244 0 0 chr9 112492699 112492744 -5369883 - MIR SINE MIR -104 104 60 233 53 53 0 chr9 112493328 112493366 -5369261 + CT-rich Low_complexity Low_complexity 1 40 0 666 128 13 54 chr9 112493366 112493515 -5369112 - L1MC2 LINE L1 -10 6334 6192 2486 51 0 63 chr9 112493535 112493867 -5368760 - AluY SINE Alu 0 311 1 1655 178 7 11 chr9 112493881 112494167 -5368460 - AluJo SINE Alu -22 290 6 811 179 8 0 chr9 112494167 112494301 -5368326 - AluJb SINE Alu -167 145 11 920 157 0 131 chr9 112494301 112494418 -5368209 - L1MC2 LINE L1 -146 6198 6126 2458 80 3 6 chr9 112494418 112494732 -5367895 - AluSp SINE Alu 0 313 1 920 157 0 131 chr9 112494732 112494850 -5367777 - L1MC2 LINE L1 -218 6126 5994 1440 233 129 5 chr9 112494905 112495322 -5367305 - MER21B LTR ERV1 -58 805 337 2271 98 3 13 chr9 112495348 112495663 -5366964 + AluSx SINE Alu 1 312 0 2483 223 66 19 chr9 112497510 112498084 -5364543 - MER77 LTR ERV1 -4 601 1 443 263 8 23 chr9 112498276 112498409 -5364218 + MIR SINE MIR 130 260 -2 206 247 0 129 chr9 112499922 112500015 -5362612 - MIR SINE MIR 0 262 182 193 376 37 9 chr9 112500761 112500870 -5361757 - MIR SINE MIR -97 165 54 301 345 48 14 chr9 112500949 112501094 -5361533 - MER5A DNA MER1_type -1 188 39 421 274 27 27 chr9 112501104 112501250 -5361377 + MIR SINE MIR 79 224 -38 1119 161 0 0 chr9 112501431 112501599 -5361028 + AluJb SINE Alu 136 303 -9 432 318 24 6 chr9 112501723 112501893 -5360734 - Charlie8 DNA MER1_type -2231 186 14 245 337 45 0 chr9 112502150 112502239 -5360388 + L3 LINE CR1 1424 1516 -61 468 261 127 0 chr9 112502877 112503019 -5359608 - MIR SINE MIR 0 262 103 868 146 0 8 chr9 112503032 112503162 -5359465 + FLAM_C SINE Alu 1 129 -4 3864 171 39 15 chr9 112503173 112503837 -5358790 + L1MB3 LINE L1 5454 6138 -45 2172 112 0 0 chr9 112503837 112504131 -5358496 + AluSx SINE Alu 1 294 -18 3864 171 39 15 chr9 112504131 112504178 -5358449 + L1MB3 LINE L1 6138 6182 -1 380 242 141 0 chr9 112504209 112504308 -5358319 + MIR SINE MIR 38 150 -112 2380 90 0 0 chr9 112504623 112504933 -5357694 + AluSx SINE Alu 1 310 -2 1328 229 121 62 chr9 112505477 112505914 -5356713 - MLT1C LTR MaLR -4 463 1 1981 140 0 0 chr9 112506060 112506346 -5356281 + AluJb SINE Alu 1 286 -26 1093 304 137 9 chr9 112506976 112507518 -5355109 - L1ME1 LINE L1 -2 6164 5554 425 306 76 47 chr9 112507727 112508175 -5354452 - L2 LINE L2 -1257 2057 1597 295 175 62 20 chr9 112508405 112508499 -5354128 + MIR SINE MIR 40 145 -63 433 285 71 106 chr9 112509824 112510152 -5352475 + L2 LINE L2 2944 3261 -11 294 87 0 0 chr9 112510152 112510198 -5352429 + (TTCA)n Simple_repeat Simple_repeat 4 49 0 433 285 71 106 chr9 112510198 112510209 -5352418 + L2 LINE L2 3261 3271 -1 1798 123 28 68 chr9 112511275 112511600 -5351027 + AluSx SINE Alu 1 312 0 893 121 15 121 chr9 112512963 112513113 -5349514 - MER53 DNA DNA -4 185 61 1712 137 0 75 chr9 112513113 112513434 -5349193 - AluJb SINE Alu -15 297 1 893 121 15 121 chr9 112513434 112513489 -5349138 - MER53 DNA DNA -128 61 2 2128 130 3 0 chr9 112513537 112513845 -5348782 + AluSx SINE Alu 1 309 -3 224 354 12 0 chr9 112514135 112514217 -5348410 - MIR SINE MIR 0 262 180 259 204 74 0 chr9 112514474 112514528 -5348099 - L2 LINE L2 -5 3267 3210 311 262 83 0 chr9 112514533 112514617 -5348010 - MIR SINE MIR -81 127 37 306 0 0 0 chr9 112514620 112514654 -5347973 + (TC)n Simple_repeat Simple_repeat 2 35 0 * 474 18 0 0 chr9 112514653 112514708 -5347919 + (TG)n Simple_repeat Simple_repeat 2 56 0 292 294 209 5 chr9 112515270 112515471 -5347156 + MIR SINE MIR 8 249 -13 579 262 34 0 chr9 112515705 112515854 -5346773 + MIR SINE MIR 74 227 -35 562 240 35 53 chr9 112515891 112516062 -5346565 - MIR SINE MIR -31 231 64 249 286 55 11 chr9 112516279 112516370 -5346257 - MIR SINE MIR -108 154 60 769 327 5 0 chr9 112516449 112516663 -5345964 + MIR SINE MIR 29 243 -19 2339 92 0 6 chr9 112516720 112517035 -5345592 - AluSq SINE Alu 0 313 1 775 211 7 0 chr9 112517162 112517309 -5345318 - L1MB7 LINE L1 -11 6173 6026 1217 111 6 0 chr9 112517309 112517481 -5345146 + AluSg/x SINE Alu 137 309 -3 2882 179 42 29 chr9 112517484 112517529 -5345098 - L1MB7 LINE L1 -230 5948 5905 2115 147 0 0 chr9 112517529 112517841 -5344786 + AluSx SINE Alu 1 312 0 2882 179 42 29 chr9 112517841 112518689 -5343938 - L1MB7 LINE L1 -273 5905 5036 1916 121 50 7 chr9 112518689 112518986 -5343641 - AluSx SINE Alu -2 310 1 2882 179 42 29 chr9 112518986 112519097 -5343530 - L1MB7 LINE L1 -1142 5036 4928 25 83 0 0 chr9 112519098 112519158 -5343469 + AT_rich Low_complexity Low_complexity 1 60 0 330 326 32 57 chr9 112519346 112519628 -5342999 - L2 LINE L2 -179 3093 2819 411 192 0 0 chr9 112520336 112520414 -5342213 + MER103 DNA DNA 35 112 -54 1821 151 0 26 chr9 112521062 112521366 -5341261 + AluJb SINE Alu 1 296 -16 611 146 0 0 chr9 112521833 112521922 -5340705 + AluSg/x SINE Alu 208 296 -16 287 314 125 23 chr9 112521957 112522308 -5340319 + L2 LINE L2 2570 3044 -228 1460 158 112 6 chr9 112522399 112522746 -5339881 - L1MC2 LINE L1 -9 6335 5952 273 330 19 19 chr9 112522746 112522852 -5339775 + L2 LINE L2 3188 3293 -20 247 302 0 43 chr9 112522852 112522991 -5339636 - L1MC4a LINE L1 -1866 5942 5810 1610 232 139 70 chr9 112522991 112523163 -5339464 - L1MC5 LINE L1 -36 7925 7766 2018 116 20 0 chr9 112523163 112523455 -5339172 - AluSx SINE Alu -14 298 1 414 42 14 28 chr9 112523456 112523527 -5339100 + (TTTTG)n Simple_repeat Simple_repeat 1 70 0 1763 174 4 0 chr9 112523527 112523808 -5338819 - AluJo SINE Alu -30 282 1 1610 232 139 70 chr9 112523808 112524497 -5338130 - L1MC5 LINE L1 -194 7767 7002 201 345 0 0 chr9 112524735 112524793 -5337834 + L3 LINE CR1 968 1025 -552 409 373 0 0 chr9 112525336 112525505 -5337122 + (CA)n Simple_repeat Simple_repeat 1 169 0 302 315 73 18 chr9 112526177 112526342 -5336285 - MIR SINE MIR -32 230 57 1959 157 0 3 chr9 112526797 112527096 -5335531 - AluJb SINE Alu -14 298 1 350 296 43 0 chr9 112528232 112528347 -5334280 + MIR SINE MIR 123 242 -20 385 279 54 8 chr9 112528503 112528632 -5333995 + MIR SINE MIR 66 200 -62 202 234 16 31 chr9 112528972 112529036 -5333591 + (CACCC)n Simple_repeat Simple_repeat 1 63 0 342 194 0 0 chr9 112531516 112531588 -5331039 + (CA)n Simple_repeat Simple_repeat 1 72 0 235 146 0 0 chr9 112532086 112532127 -5330500 + L1MB7 LINE L1 6134 6174 -10 192 294 0 0 chr9 112532148 112532199 -5330428 - MIR SINE MIR -165 97 47 2233 99 3 3 chr9 112532263 112532566 -5330061 - AluSq SINE Alu -10 303 1 301 231 13 0 chr9 112536676 112536754 -5325873 - MER96 DNA MER1_type? -2 173 95 214 316 132 0 chr9 112537596 112537672 -5324955 + MER5B DNA MER1_type 25 110 -68 349 253 91 0 chr9 112537972 112538071 -5324556 + MIR3 SINE MIR 78 185 -23 420 221 0 82 chr9 112539324 112539519 -5323108 + (CGGGG)n Simple_repeat Simple_repeat 1 179 0 272 263 212 2 chr9 112539775 112539936 -5322691 - L2 LINE L2 -269 3003 2811 31 0 0 0 chr9 112540265 112540296 -5322331 + GC_rich Low_complexity Low_complexity 1 31 0 23 78 0 0 chr9 112540382 112540433 -5322194 + GC_rich Low_complexity Low_complexity 1 51 0 25 31 0 0 chr9 112540476 112540508 -5322119 + GC_rich Low_complexity Low_complexity 1 32 0 180 200 0 0 chr9 112540605 112540645 -5321982 + T-rich Low_complexity Low_complexity 1 40 0 350 286 60 22 chr9 112542174 112542356 -5320271 + MLT1J LTR MaLR 26 214 -297 865 154 0 0 chr9 112542577 112542713 -5319914 - FLAM_C SINE Alu -2 141 6 500 314 24 33 chr9 112543806 112543856 -5318771 - MIR SINE MIR -48 214 165 719 242 76 38 chr9 112543856 112544067 -5318560 - MER20 DNA MER1_type 0 219 1 500 314 24 33 chr9 112544067 112544226 -5318401 - MIR SINE MIR -97 165 7 355 216 21 62 chr9 112544692 112544789 -5317838 - L1ME4a LINE L1 -34 6087 5995 1834 167 0 3 chr9 112544790 112545089 -5317538 - AluJb SINE Alu -13 299 2 2284 89 3 0 chr9 112545435 112545738 -5316889 + AluSq SINE Alu 8 311 -2 1014 130 12 19 chr9 112545739 112545900 -5316727 + AluSq SINE Alu 135 294 -19 2303 104 3 0 chr9 112545901 112546209 -5316418 + AluSp SINE Alu 1 309 -4 261 303 0 11 chr9 112546439 112546528 -5316099 - MIR SINE MIR -126 136 49 24 20 0 60 chr9 112546559 112546609 -5316018 + AT_rich Low_complexity Low_complexity 1 47 0 2168 125 0 3 chr9 112546709 112547022 -5315605 + AluSq SINE Alu 1 312 -1 2244 94 7 0 chr9 112547031 112547330 -5315297 + AluSx SINE Alu 1 301 -11 799 313 26 15 chr9 112547696 112547958 -5314669 + MIR SINE MIR 3 261 -1 252 136 0 0 chr9 112548077 112548121 -5314506 - L2 LINE L2 -75 3197 3154 518 251 111 15 chr9 112548828 112549027 -5313600 - MER115 DNA AcHobo -6 687 470 1551 160 83 0 chr9 112549523 112549811 -5312816 - MER1B DNA MER1_type -27 312 1 283 280 40 0 chr9 112549816 112549916 -5312711 - Charlie8 DNA MER1_type -2268 149 46 1015 160 19 122 chr9 112549916 112550235 -5312392 + L1MB5 LINE L1 5587 5872 -302 676 81 0 0 chr9 112550236 112550322 -5312305 + AluSx SINE Alu 1 86 -227 7461 87 19 20 chr9 112550322 112551330 -5311297 - LTR13 LTR ERVK 0 1007 1 1581 101 0 5 chr9 112551331 112551539 -5311088 + AluSx SINE Alu 80 286 -24 817 184 13 0 chr9 112551552 112551710 -5310917 + L1MB5 LINE L1 5864 6023 -151 1304 130 0 5 chr9 112551710 112551894 -5310733 + AluSp SINE Alu 125 307 -6 675 307 84 6 chr9 112551925 112552270 -5310357 + L1MC4 LINE L1 7197 7568 -474 411 267 37 143 chr9 112552329 112552487 -5310140 + L1MC4 LINE L1 7560 7733 -309 2441 97 0 0 chr9 112552487 112552797 -5309830 + AluSg SINE Alu 1 310 0 411 267 37 143 chr9 112552797 112552927 -5309700 + L1MC4 LINE L1 7733 7801 -241 2533 46 0 10 chr9 112552927 112553234 -5309393 + AluY SINE Alu 1 304 -7 411 267 37 143 chr9 112553234 112553322 -5309305 + L1MC4 LINE L1 7801 7897 -145 370 102 17 0 chr9 112553338 112553397 -5309230 + FLAM SINE Alu 73 132 -1 336 212 60 0 chr9 112553409 112553510 -5309117 + L1MC4 LINE L1 7879 8042 0 2042 148 0 0 chr9 112553522 112553825 -5308802 + AluSx SINE Alu 1 303 -9 1262 119 0 0 chr9 112553825 112554001 -5308626 + AluSg/x SINE Alu 132 307 -3 252 269 21 0 chr9 112554069 112554162 -5308465 + L1M4 LINE L1 4951 5045 -1101 1254 122 11 0 chr9 112554182 112554362 -5308265 + AluSg/x SINE Alu 120 301 -9 2313 112 0 0 chr9 112554472 112554775 -5307852 - AluSg SINE Alu -7 303 1 790 219 63 10 chr9 112554903 112555108 -5307519 - MER20 DNA MER1_type -1 218 3 2077 105 0 33 chr9 112555116 112555420 -5307207 + AluSx SINE Alu 5 298 -14 238 258 65 37 chr9 112555430 112555538 -5307089 + L1ME3A LINE L1 5832 5940 -229 384 127 0 0 chr9 112555779 112555872 -5306755 + AluS SINE Alu 222 314 0 24 32 0 0 chr9 112556701 112556732 -5305895 + AT_rich Low_complexity Low_complexity 1 31 0 2436 88 0 0 chr9 112556739 112557045 -5305582 + AluSg SINE Alu 1 306 -4 2426 84 0 0 chr9 112557871 112558180 -5304447 + AluSx SINE Alu 1 309 -3 291 173 24 126 chr9 112558190 112558258 -5304369 + MER5B DNA MER1_type 60 111 -67 2296 82 12 35 chr9 112558258 112558577 -5304050 - AluSx SINE Alu 0 312 1 291 173 24 126 chr9 112558577 112558635 -5303992 + MER5B DNA MER1_type 111 173 -5 2535 62 7 0 chr9 112563458 112563762 -5298865 - AluY SINE Alu -5 306 1 773 214 56 17 chr9 112563812 112563990 -5298637 - MER3 DNA MER1_type -18 191 7 473 115 26 0 chr9 112564429 112564507 -5298120 + MIR SINE MIR 72 151 -111 290 209 0 15 chr9 112564510 112564577 -5298050 + HsTC2 DNA Tc2 4 69 -1829 1210 224 186 36 chr9 112564603 112564728 -5297899 + HsTC2 DNA Tc2 1149 1254 -644 2128 129 0 16 chr9 112564728 112565031 -5297596 + AluSx SINE Alu 1 298 -14 1210 224 186 36 chr9 112565031 112565406 -5297221 + HsTC2 DNA Tc2 1254 1900 2 474 184 39 101 chr9 112566203 112566382 -5296245 + Charlie2 DNA MER1_type 2241 2408 -454 410 247 13 4 chr9 112566387 112566499 -5296128 - L1MD2 LINE L1 0 7785 6247 1194 162 64 0 chr9 112566513 112566717 -5295910 + AluJb SINE Alu 44 260 -52 495 148 87 67 chr9 112566899 112567048 -5295579 + Charlie2 DNA MER1_type 2657 2808 -54 322 266 18 37 chr9 112567512 112567621 -5295006 - MIR SINE MIR 0 262 156 1718 131 0 4 chr9 112569520 112569764 -5292863 + AluJb SINE Alu 1 243 -69 2399 52 42 0 chr9 112570119 112570408 -5292219 - AluY SINE Alu -10 301 1 1263 203 80 11 chr9 112570411 112570687 -5291940 - AluJo SINE Alu -17 295 1 521 176 93 19 chr9 112570736 112570844 -5291783 - FLAM_A SINE Alu -17 116 1 937 207 63 0 chr9 112570886 112571108 -5291519 - L1MB8 LINE L1 -175 6003 5768 282 200 0 0 chr9 112571110 112571160 -5291467 + L1M4 LINE L1 4542 4591 -1555 598 202 109 0 chr9 112571203 112571322 -5291305 + FLAM_C SINE Alu 2 133 -10 3631 221 76 28 chr9 112571346 112571403 -5291224 - L1MB8 LINE L1 -1599 4547 4494 2267 111 0 3 chr9 112571403 112571701 -5290926 - AluSx SINE Alu -15 297 1 3631 221 76 28 chr9 112571701 112572672 -5289955 - L1MB8 LINE L1 -1652 4494 3461 2344 87 0 22 chr9 112572672 112572984 -5289643 - AluSx SINE Alu -7 305 1 3631 221 76 28 chr9 112572984 112573040 -5289587 - L1MB8 LINE L1 -2685 3461 3409 185 333 12 0 chr9 112574024 112574108 -5288519 - MIR SINE MIR -4 258 174 314 322 83 60 chr9 112574454 112574886 -5287741 + L2 LINE L2 176 617 -2697 207 200 50 0 chr9 112575055 112575095 -5287532 + L2 LINE L2 3129 3170 -102 1973 130 0 35 chr9 112575735 112576051 -5286576 + AluJb SINE Alu 1 305 -7 385 200 10 40 chr9 112576057 112576157 -5286470 + L1ME4a LINE L1 5974 6070 -51 1250 122 0 6 chr9 112576681 112576861 -5285766 - AluSg/x SINE Alu 0 312 134 205 306 231 0 chr9 112577095 112577203 -5285424 - L2 LINE L2 -1 3312 3180 532 189 95 88 chr9 112577209 112577357 -5285270 - MER46A DNA MER2_type -87 149 1 285 210 0 16 chr9 112577359 112577421 -5285206 + MER112 DNA MER1_type 199 259 -1 1244 39 7 0 chr9 112577511 112577664 -5284963 + L1PA5 LINE L1 6000 6153 -1 203 200 0 22 chr9 112578161 112578206 -5284421 + (CATATA)n Simple_repeat Simple_repeat 6 49 0 518 217 17 0 chr9 112578234 112578349 -5284278 + L2 LINE L2 3188 3304 -9 1887 117 71 0 chr9 112579995 112580277 -5282350 + AluSx SINE Alu 1 302 -10 1733 157 29 32 chr9 112580516 112580829 -5281798 - AluJb SINE Alu 0 312 1 2534 59 3 0 chr9 112583110 112583414 -5279213 - AluY SINE Alu -6 305 1 1591 131 120 25 chr9 112583702 112583837 -5278790 + AluSx SINE Alu 1 122 -190 2429 84 0 0 chr9 112583837 112584136 -5278491 + AluSc SINE Alu 1 299 -10 2340 96 0 7 chr9 112584138 112584440 -5278187 + AluSc SINE Alu 1 300 -9 1591 131 120 25 chr9 112584440 112584575 -5278052 + AluSx SINE Alu 122 300 -12 22 35 0 0 chr9 112584602 112584631 -5277996 + AT_rich Low_complexity Low_complexity 1 29 0 471 274 169 69 chr9 112584975 112585336 -5277291 + MLT1K LTR MaLR 92 488 -100 1030 164 5 75 chr9 112585417 112585440 -5277187 + MER58A DNA MER1_type 16 39 -2381 1621 184 3 26 chr9 112585440 112585744 -5276883 + AluJo SINE Alu 1 297 -15 1030 164 5 75 chr9 112585744 112585933 -5276694 + MER58A DNA MER1_type 39 213 -11 189 222 0 0 chr9 112585965 112586028 -5276599 + A-rich Low_complexity Low_complexity 1 63 0 1928 151 0 7 chr9 112586129 112586421 -5276206 + AluSx SINE Alu 1 290 -22 22 35 0 0 chr9 112586590 112586619 -5276008 + AT_rich Low_complexity Low_complexity 1 29 0 2743 151 62 57 chr9 112587264 112587809 -5274818 + LTR14 LTR ERVK 1 548 0 2040 152 0 3 chr9 112588164 112588466 -5274161 + AluSx SINE Alu 1 301 -11 21 0 0 0 chr9 112588500 112588521 -5274106 + AT_rich Low_complexity Low_complexity 1 21 0 2432 101 0 0 chr9 112588532 112588839 -5273788 + AluSg SINE Alu 1 307 -3 1197 192 0 5 chr9 112588850 112589064 -5273563 + AluJb SINE Alu 1 213 -99 243 0 0 0 chr9 112589077 112589104 -5273523 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 220 246 213 41 chr9 112589182 112589304 -5273323 + L2 LINE L2 3168 3310 -3 2545 65 0 0 chr9 112589397 112589703 -5272924 - AluY SINE Alu -5 306 1 743 248 25 5 chr9 112589720 112589918 -5272709 + L1MEd LINE L1 4 205 -5914 262 141 83 62 chr9 112589972 112590086 -5272541 - L1ME3 LINE L1 0 6162 6037 201 211 28 28 chr9 112590228 112590299 -5272328 + (TTTAA)n Simple_repeat Simple_repeat 3 73 0 1374 177 103 7 chr9 112590398 112590680 -5271947 + AluJo SINE Alu 1 309 -3 651 295 117 9 chr9 112590823 112590863 -5271764 + L1M4 LINE L1 3587 3621 -2525 2434 61 0 29 chr9 112590863 112591174 -5271453 - AluY SINE Alu -9 302 1 651 295 117 9 chr9 112591174 112591570 -5271057 + L1M4 LINE L1 3621 4070 -2076 2046 132 7 0 chr9 112591662 112591957 -5270670 - AluSq SINE Alu -16 297 1 2455 49 0 7 chr9 112591978 112592288 -5270339 + AluY SINE Alu 1 308 0 243 135 0 0 chr9 112592293 112592330 -5270297 + MER96 DNA MER1_type? 137 173 -2 229 261 29 0 chr9 112592333 112592402 -5270225 + L1P2 LINE L1 5365 5435 -719 268 271 199 21 chr9 112592435 112592671 -5269956 + L1ME LINE L1 5546 5646 -524 598 249 119 101 chr9 112592821 112593199 -5269428 + MLT1J LTR MaLR 92 476 -35 300 281 0 34 chr9 112593457 112593546 -5269081 + MIR SINE MIR 101 186 -76 318 250 0 13 chr9 112593906 112593982 -5268645 + L2 LINE L2 3234 3308 -5 2171 97 10 36 chr9 112594508 112594817 -5267810 + AluSx SINE Alu 1 301 -11 1699 320 85 12 chr9 112596712 112597632 -5264995 - L2 LINE L2 -97 3216 2234 2166 95 48 3 chr9 112598098 112598393 -5264234 + AluSq SINE Alu 1 308 -5 2435 57 20 3 chr9 112599326 112599624 -5263003 - AluY SINE Alu -8 303 1 1586 142 148 32 chr9 112599705 112600016 -5262611 + MER7A DNA MER2_type 2 346 0 1388 231 114 63 chr9 112600140 112600314 -5262313 + L1MC/D LINE L1 4443 4607 -1620 2486 76 0 0 chr9 112600314 112600615 -5262012 + AluY SINE Alu 2 302 -9 892 76 0 0 chr9 112600503 112600615 -5262012 + AluY SINE Alu 191 305 -6 2615 70 0 6 chr9 112600615 112600930 -5261697 + AluSq SINE Alu 1 313 0 1388 231 114 63 chr9 112600930 112601254 -5261373 + L1MC/D LINE L1 4607 4913 -1314 1676 196 0 16 chr9 112601254 112601560 -5261067 - AluJo SINE Alu -11 301 1 1388 231 114 63 chr9 112601560 112602075 -5260552 + L1MC/D LINE L1 4913 5482 -745 2037 74 63 4 chr9 112602081 112602350 -5260277 + AluSx SINE Alu 5 289 -23 734 139 0 0 chr9 112602790 112602898 -5259729 + AluJb SINE Alu 203 310 -2 1959 147 10 0 chr9 112602953 112603253 -5259374 + AluSx SINE Alu 1 303 -9 2438 62 0 16 chr9 112603305 112603609 -5259018 + AluY SINE Alu 1 299 -12 33 0 0 0 chr9 112603636 112603669 -5258958 + AT_rich Low_complexity Low_complexity 1 33 0 2544 204 32 17 chr9 112603682 112604269 -5258358 + L1MC4a LINE L1 7213 7808 0 329 287 56 21 chr9 112604273 112604416 -5258211 - L1MC4 LINE L1 -1451 6591 6444 1981 117 4 0 chr9 112604483 112604749 -5257878 - AluSx SINE Alu -45 267 1 372 213 182 58 chr9 112604925 112604941 -5257686 - L1M4 LINE L1 -3638 2508 2495 180 0 0 0 chr9 112604941 112604961 -5257666 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 899 199 19 13 chr9 112604961 112605117 -5257510 - FAM SINE Alu -18 157 1 372 213 182 58 chr9 112605117 112605210 -5257417 - L1M4 LINE L1 -3651 2495 2415 2195 105 3 0 chr9 112605210 112605526 -5257101 + AluSx SINE Alu 1 317 0 372 213 182 58 chr9 112605526 112605671 -5256956 - L1M4 LINE L1 -3731 2415 2219 462 258 31 16 chr9 112605675 112605803 -5256824 + L1MC5 LINE L1 6693 6822 -1139 2376 71 7 0 chr9 112605916 112606212 -5256415 - AluSx SINE Alu -12 300 3 1883 189 161 48 chr9 112606212 112606878 -5255749 + L1MC5 LINE L1 6992 7733 -228 645 232 215 62 chr9 112606895 112607108 -5255519 + L1ME LINE L1 4436 4615 -1531 1976 127 34 0 chr9 112607108 112607400 -5255227 + AluSx SINE Alu 6 307 -5 645 232 215 62 chr9 112607400 112607651 -5254976 + L1ME LINE L1 4615 4971 -1175 327 251 185 87 chr9 112607689 112607794 -5254833 - MER58C DNA MER1_type -2206 214 121 786 157 0 57 chr9 112607794 112607934 -5254693 + FLAM_C SINE Alu 2 133 0 327 251 185 87 chr9 112607934 112608023 -5254604 - MER58C DNA MER1_type -2299 121 1 870 272 101 23 chr9 112608276 112608710 -5253917 + L1ME LINE L1 5254 5721 -441 1035 195 58 0 chr9 112608713 112608903 -5253724 + MER68 LTR ERV1 1 201 -361 1368 153 77 15 chr9 112608929 112609190 -5253437 + Tigger2a DNA MER2_type 1 277 -157 182 61 0 30 chr9 112609196 112609229 -5253398 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 2049 75 4 8 chr9 112609238 112609504 -5253123 - AluSc SINE Alu -44 265 1 754 178 124 16 chr9 112610254 112610439 -5252188 - MER3 DNA MER1_type 0 209 5 2032 221 45 6 chr9 112611007 112611494 -5251133 + L1MB7 LINE L1 5663 6175 -9 1946 131 6 16 chr9 112612160 112612336 -5250291 - AluSq SINE Alu -4 309 136 2336 76 14 0 chr9 112612336 112612626 -5250001 - AluSp SINE Alu -19 294 1 1946 131 6 16 chr9 112612626 112612761 -5249866 - AluSq SINE Alu -177 136 1 194 0 39 0 chr9 112613115 112613141 -5249486 + (TTA)n Simple_repeat Simple_repeat 2 28 0 2351 93 0 13 chr9 112613144 112613454 -5249173 - AluSx SINE Alu -6 306 1 292 280 162 49 chr9 112613630 112613976 -5248651 + L2 LINE L2 1533 1917 -1397 495 284 37 52 chr9 112615050 112615321 -5247306 - L1M4 LINE L1 -1379 4767 4501 355 276 60 36 chr9 112615664 112615865 -5246762 - L1MEd LINE L1 -3643 2486 2276 872 163 0 15 chr9 112615865 112616000 -5246627 - FLAM_C SINE Alu 0 133 1 355 276 60 36 chr9 112616000 112616048 -5246579 - L1MEd LINE L1 -3853 2276 2231 467 335 124 33 chr9 112616218 112616612 -5246015 - L1MEd LINE L1 -4965 1154 725 748 309 75 62 chr9 112617302 112617849 -5244778 + L2 LINE L2 2408 2961 -353 2287 77 0 59 chr9 112618531 112618854 -5243773 + AluY SINE Alu 1 304 -7 742 221 58 5 chr9 112618963 112619153 -5243474 + HAL1 LINE L1 19 218 -2289 491 231 178 92 chr9 112619191 112619472 -5243155 + HAL1 LINE L1 410 714 -1793 2247 101 0 49 chr9 112619473 112619610 -5243017 + AluSx SINE Alu 1 143 -169 2416 76 6 16 chr9 112619610 112619924 -5242703 + AluY SINE Alu 1 311 0 2247 101 0 49 chr9 112619924 112620113 -5242514 + AluSx SINE Alu 143 311 -1 2309 163 49 36 chr9 112620431 112620904 -5241723 - L1MB7 LINE L1 0 6184 5706 808 257 96 42 chr9 112620904 112621309 -5241318 + HAL1 LINE L1 798 1224 -1283 * 903 254 249 30 chr9 112621279 112621860 -5240767 + HAL1 LINE L1 1625 2390 -117 1824 177 0 7 chr9 112621860 112622170 -5240457 + AluJb SINE Alu 1 308 -4 903 254 249 30 chr9 112622170 112622296 -5240331 + HAL1 LINE L1 2390 2487 -20 468 312 219 13 chr9 112622695 112623006 -5239621 + L2 LINE L2 2897 3271 -1 2478 77 3 0 chr9 112623315 112623625 -5239002 + AluY SINE Alu 1 311 0 214 254 113 0 chr9 112623859 112623885 -5238742 + L2 LINE L2 3197 3219 -94 2147 104 3 23 chr9 112623885 112624193 -5238434 + AluSq SINE Alu 1 302 -11 214 254 113 0 chr9 112624193 112624237 -5238390 + L2 LINE L2 3219 3275 -38 1326 92 0 0 chr9 112624306 112624479 -5238148 - AluSg/x SINE Alu -10 299 127 187 364 10 0 chr9 112630518 112630617 -5232010 + L2 LINE L2 2958 3057 -215 1583 192 20 3 chr9 112630879 112631176 -5231451 + AluJb SINE Alu 1 302 -10 2230 122 3 0 chr9 112631339 112631650 -5230977 + AluSx SINE Alu 1 312 0 369 0 0 0 chr9 112631663 112631704 -5230923 + (CA)n Simple_repeat Simple_repeat 2 42 0 864 186 64 59 chr9 112632005 112632209 -5230418 + MER3 DNA MER1_type 1 205 -4 2025 114 0 7 chr9 112632425 112632721 -5229906 + AluSq SINE Alu 16 309 0 436 143 67 48 chr9 112633213 112633318 -5229309 - HsTC2 DNA Tc2 -2 1896 1790 2644 45 0 3 chr9 112633355 112633663 -5228964 + AluY SINE Alu 1 307 -4 1100 148 0 0 chr9 112633727 112633889 -5228738 - FRAM SINE Alu -15 161 1 2193 94 7 3 chr9 112634206 112634493 -5228134 + AluSx SINE Alu 1 288 -24 882 198 128 77 chr9 112634854 112635028 -5227599 + L1MC5 LINE L1 7505 7669 -292 2026 134 0 10 chr9 112635028 112635319 -5227308 + AluSx SINE Alu 1 288 -24 882 198 128 77 chr9 112635319 112635533 -5227094 + L1MC5 LINE L1 7669 7913 -48 233 227 172 16 chr9 112635652 112635780 -5226847 - MER112 DNA MER1_type -48 212 65 1456 203 137 71 chr9 112635869 112636338 -5226289 + L1MC4 LINE L1 7014 7531 -511 2291 100 0 3 chr9 112636338 112636639 -5225988 - AluSg SINE Alu -10 300 1 1456 203 137 71 chr9 112636639 112636760 -5225867 + L1MC4 LINE L1 7531 7643 -399 434 218 61 34 chr9 112636842 112636989 -5225638 - L1M2 LINE L1 -845 5452 5302 1515 197 16 30 chr9 112637006 112637311 -5225316 - AluJo SINE Alu -11 301 1 1334 172 120 4 chr9 112637450 112637717 -5224910 + AluJb SINE Alu 1 298 -14 2135 118 0 7 chr9 112637867 112638163 -5224464 - AluSq SINE Alu -19 294 1 460 301 65 65 chr9 112638196 112638448 -5224179 - L1MEd LINE L1 -4971 1148 894 429 82 0 0 chr9 112638448 112638509 -5224118 - L1PA6 LINE L1 0 6154 6094 460 301 65 65 chr9 112638509 112638592 -5224035 - L1MEd LINE L1 -5224 895 813 854 133 0 0 chr9 112639309 112639429 -5223198 + AluSq/x SINE Alu 1 120 -192 308 114 0 0 chr9 112639429 112639473 -5223154 + Alu SINE Alu 256 299 -9 31 0 0 0 chr9 112639473 112639504 -5223123 + AT_rich Low_complexity Low_complexity 1 31 0 2381 82 0 3 chr9 112641283 112641586 -5221041 + AluY SINE Alu 2 303 -8 509 247 27 53 chr9 112641883 112642033 -5220594 + L1ME3A LINE L1 5972 6117 -53 918 221 56 10 chr9 112642249 112642444 -5220183 + MER8 DNA MER2_type 11 214 -25 982 211 11 0 chr9 112642469 112642649 -5219978 - AluJb SINE Alu -23 289 108 245 276 47 16 chr9 112642695 112642822 -5219805 + L1MC5 LINE L1 7504 7634 -327 2136 108 20 3 chr9 112642837 112643133 -5219494 + AluSx SINE Alu 1 301 -11 1061 160 47 42 chr9 112643277 112643489 -5219138 + MER20 DNA MER1_type 7 219 0 2237 108 0 0 chr9 112643530 112643817 -5218810 - AluSx SINE Alu -24 288 2 254 237 85 17 chr9 112643854 112643972 -5218655 + L1MC4 LINE L1 7916 8041 -1 1762 170 7 13 chr9 112643979 112644279 -5218348 + AluJb SINE Alu 1 298 -14 1627 195 10 23 chr9 112644914 112645216 -5217411 + AluJo SINE Alu 1 298 -14 2173 117 10 0 chr9 112645218 112645527 -5217100 + AluSp SINE Alu 1 312 -1 2132 113 10 0 chr9 112645563 112645855 -5216772 - AluSg SINE Alu -15 295 1 2337 86 3 16 chr9 112646322 112646636 -5215991 + AluSx SINE Alu 1 310 -2 261 240 0 0 chr9 112646819 112646869 -5215758 - L2 LINE L2 -13 3259 3210 1796 148 7 17 chr9 112646893 112647183 -5215444 + AluJb SINE Alu 1 287 -25 306 210 48 0 chr9 112647234 112647296 -5215331 + L1MC/D LINE L1 5621 5685 -2123 412 135 0 79 chr9 112647296 112647385 -5215242 + AluJ/FRAM SINE Alu 231 312 0 411 267 67 28 chr9 112648091 112648312 -5214315 + MER106B DNA MER1_type 4 1055 -4 2008 127 20 10 chr9 112648319 112648619 -5214008 + AluSx SINE Alu 1 303 -9 25 0 0 0 chr9 112648897 112648922 -5213705 + AT_rich Low_complexity Low_complexity 1 25 0 1435 92 0 5 chr9 112650718 112650903 -5211724 + AluSc SINE Alu 1 184 -125 628 320 126 14 chr9 112650939 112651493 -5211134 + L2 LINE L2 2249 2870 -444 184 311 135 0 chr9 112652106 112652180 -5210447 - MIR SINE MIR -129 133 50 1234 172 23 16 chr9 112652519 112652775 -5209852 + AluJo SINE Alu 55 312 0 22 35 0 0 chr9 112653302 112653331 -5209296 + GC_rich Low_complexity Low_complexity 1 29 0 1254 143 31 42 chr9 112653811 112653953 -5208674 + AluJo SINE Alu 6 145 -167 2411 65 3 0 chr9 112653953 112654262 -5208365 + AluSq SINE Alu 1 310 -3 1254 143 31 42 chr9 112654262 112654405 -5208222 + AluJo SINE Alu 145 288 -24 2099 92 7 3 chr9 112654458 112654751 -5207876 - AluSx SINE Alu -18 294 1 469 154 27 107 chr9 112655132 112655196 -5207431 - ORSL DNA AcHobo -129 146 78 2409 41 3 0 chr9 112655196 112655491 -5207136 - AluY SINE Alu -15 296 1 469 154 27 107 chr9 112655491 112655575 -5207052 - ORSL DNA AcHobo -197 78 10 361 269 58 29 chr9 112655750 112655921 -5206706 - MER69 DNA AcHobo -4 2522 2347 1566 112 0 0 chr9 112655921 112656136 -5206491 + AluSx SINE Alu 1 215 -97 459 0 0 0 chr9 112656164 112656215 -5206412 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 529 210 17 62 chr9 112656222 112656398 -5206229 - L1M4 LINE L1 -1419 4963 4796 2449 146 28 66 chr9 112656399 112656512 -5206115 + MER6A DNA MER2_type -26 90 -705 2124 81 0 27 chr9 112656512 112656808 -5205819 - AluSg SINE Alu -22 288 1 2449 146 28 66 chr9 112656808 112657196 -5205431 + MER6A DNA MER2_type 90 457 -78 1922 241 15 15 chr9 112657721 112657866 -5204761 - L1M4c LINE L1 -3076 3306 3162 1730 176 0 13 chr9 112657866 112658179 -5204448 - AluJo SINE Alu -3 309 1 1922 241 15 15 chr9 112658179 112658556 -5204071 - L1M4c LINE L1 -3219 3163 2784 2166 85 7 0 chr9 112658557 112658850 -5203777 + AluSg SINE Alu 1 295 -15 1162 125 17 0 chr9 112658850 112659026 -5203601 + AluSq SINE Alu 134 312 -1 963 208 55 143 chr9 112659038 112659424 -5203203 - L1M4c LINE L1 -3585 2797 2379 2181 107 0 0 chr9 112659424 112659724 -5202903 - AluSp SINE Alu -13 300 1 963 208 55 143 chr9 112659724 112660068 -5202559 - L1M4c LINE L1 -4003 2379 2133 2317 54 0 57 chr9 112660068 112660384 -5202243 - AluY SINE Alu -13 298 1 963 208 55 143 chr9 112660384 112660418 -5202209 - L1M4c LINE L1 -4249 2133 2098 2168 117 0 0 chr9 112660529 112660838 -5201789 + AluSx SINE Alu 1 309 -3 2149 117 3 0 chr9 112660838 112661145 -5201482 + AluSx SINE Alu 1 308 -4 2167 106 0 3 chr9 112661980 112662283 -5200344 - AluSg SINE Alu -8 302 1 818 157 0 0 chr9 112662316 112662437 -5200190 + AluJb SINE Alu 6 126 -186 2158 93 0 13 chr9 112662626 112662762 -5199865 + AluSp SINE Alu 1 137 -176 2422 46 7 0 chr9 112662762 112663066 -5199561 + AluY SINE Alu 1 306 -5 2158 93 0 13 chr9 112663066 112663231 -5199396 + AluSp SINE Alu 137 298 -15 2127 109 0 6 chr9 112663315 112663628 -5198999 - AluSx SINE Alu -1 311 1 1923 228 131 26 chr9 112663675 112664240 -5198387 + MLT1E2 LTR MaLR 1 624 -2 460 296 91 0 chr9 112664272 112664471 -5198156 - L1M4 LINE L1 -1842 4304 4088 578 103 0 62 chr9 112664472 112664569 -5198058 - FLAM_A SINE Alu -6 136 46 433 260 225 5 chr9 112664577 112664777 -5197850 - L1M4 LINE L1 -2063 4083 3840 1917 178 74 0 chr9 112664842 112665219 -5197408 - L1MB5 LINE L1 -9 6165 5761 227 267 59 52 chr9 112665332 112665467 -5197160 - L1MEd LINE L1 -5982 137 2 2043 110 0 0 chr9 112665535 112665836 -5196791 + AluSx SINE Alu 1 301 0 1024 242 43 118 chr9 112666238 112666953 -5195674 - PABL_B LTR ERV1 0 667 6 233 235 15 15 chr9 112667393 112667461 -5195166 + CT-rich Low_complexity Low_complexity 2 69 0 344 303 153 37 chr9 112667468 112667709 -5194918 - L2 LINE L2 -42 3271 3003 205 371 86 45 chr9 112667797 112668018 -5194609 - L2 LINE L2 -348 2966 2737 258 136 0 0 chr9 112668018 112668062 -5194565 + (TC)n Simple_repeat Simple_repeat 2 45 0 2064 119 7 0 chr9 112668065 112668360 -5194267 - AluSx SINE Alu -15 297 1 322 300 121 32 chr9 112668389 112668702 -5193925 - L2 LINE L2 -616 2698 2358 267 208 83 14 chr9 112669110 112669182 -5193445 + MER51D LTR ERV1 500 576 -81 476 79 0 0 chr9 112669210 112669273 -5193354 - AluY SINE Alu -15 294 232 1440 51 0 6 chr9 112669273 112669450 -5193177 - AluY SINE Alu -122 189 14 454 269 138 80 chr9 112669567 112669647 -5192980 - L2 LINE L2 -896 2418 2344 2101 93 4 0 chr9 112669647 112669953 -5192674 + AluSp SINE Alu 2 308 0 454 269 138 80 chr9 112669953 112670196 -5192431 - L2 LINE L2 -970 2344 2073 201 138 0 0 chr9 112670203 112670232 -5192395 + (CATATA)n Simple_repeat Simple_repeat 1 29 0 185 280 107 0 chr9 112670240 112670315 -5192312 - L2 LINE L2 -1618 1696 1614 1447 137 31 45 chr9 112670361 112670653 -5191974 + AluJb SINE Alu 16 303 -9 332 376 132 7 chr9 112670694 112671125 -5191502 - L2 LINE L2 -1831 1483 999 275 221 33 107 chr9 112671203 112671255 -5191372 + L2 LINE L2 3150 3204 -68 2242 77 13 0 chr9 112671255 112671554 -5191073 - AluSg SINE Alu -7 303 1 275 221 33 107 chr9 112671554 112671623 -5191004 + L2 LINE L2 3204 3262 -10 1061 108 24 12 chr9 112671862 112672028 -5190599 + AluSg/x SINE Alu 135 302 -8 1832 117 39 4 chr9 112672166 112672447 -5190180 - AluSx SINE Alu -21 291 1 1959 119 13 42 chr9 112672455 112672766 -5189861 - AluSx SINE Alu -10 302 1 261 164 18 18 chr9 112672820 112672875 -5189752 + LTR33A LTR ERVL 453 507 -16 910 161 18 0 chr9 112672942 112673110 -5189517 - FRAM SINE Alu -4 172 2 209 136 0 23 chr9 112673147 112673191 -5189436 + (TCCC)n Simple_repeat Simple_repeat 1 43 0 820 116 25 0 chr9 112673191 112673312 -5189315 - FLAM_C SINE Alu -19 124 1 1676 127 0 0 chr9 112673976 112674212 -5188415 - AluSx SINE Alu -64 248 13 616 315 72 0 chr9 112674514 112674695 -5187932 - MIR SINE MIR -26 236 43 255 243 32 159 chr9 112674790 112674904 -5187723 - MER5A DNA MER1_type -22 167 85 1223 141 80 119 chr9 112674904 112675216 -5187411 - AluJo SINE Alu -12 300 1 255 243 32 159 chr9 112675216 112675290 -5187337 - MER5A DNA MER1_type -104 85 3 292 233 47 0 chr9 112675354 112675526 -5187101 + (TG)n Simple_repeat Simple_repeat 1 180 0 439 195 46 3 chr9 112675546 112676211 -5186416 + (TG)n Simple_repeat Simple_repeat 1 693 0 448 197 50 0 chr9 112676271 112676621 -5186006 + (TG)n Simple_repeat Simple_repeat 1 367 0 293 198 52 6 chr9 112676647 112676819 -5185808 + (TG)n Simple_repeat Simple_repeat 1 180 0 262 224 36 12 chr9 112676863 112677028 -5185599 + (TG)n Simple_repeat Simple_repeat 1 169 0 303 316 21 78 chr9 112677053 112677246 -5185381 - MIR SINE MIR -13 249 68 751 286 59 9 chr9 112677696 112677916 -5184711 - MIR SINE MIR -24 238 8 1903 131 3 30 chr9 112678305 112678610 -5184017 - AluSx SINE Alu -15 297 1 185 293 86 26 chr9 112678646 112678762 -5183865 - MIR SINE MIR -119 143 21 993 163 0 11 chr9 112679130 112679308 -5183319 - AluJb SINE Alu -1 311 136 2142 92 14 0 chr9 112679429 112679721 -5182906 - AluSx SINE Alu -16 296 1 265 222 25 34 chr9 112680384 112680508 -5182119 + L1P5 LINE L1 5318 5442 -714 1506 261 126 24 chr9 112680515 112680881 -5181746 + L1MC4 LINE L1 7241 7568 -474 1375 138 44 119 chr9 112680881 112681013 -5181614 + AluSg SINE Alu 1 141 -169 2071 123 3 0 chr9 112681013 112681306 -5181321 + AluSq SINE Alu 1 294 -19 1375 138 44 119 chr9 112681306 112681493 -5181134 + AluSg SINE Alu 141 296 -14 1506 261 126 24 chr9 112681493 112681824 -5180803 + L1MC4 LINE L1 7568 8009 -33 342 286 92 66 chr9 112682208 112682435 -5180192 + L1MC5 LINE L1 7685 7917 -44 452 248 157 16 chr9 112682469 112682775 -5179852 + L1M4 LINE L1 2982 3330 -2816 2223 105 3 0 chr9 112682875 112683181 -5179446 - AluSx SINE Alu -5 307 1 351 269 12 117 chr9 112683388 112683559 -5179068 + MER5B DNA MER1_type 23 175 -3 203 321 75 9 chr9 112683716 112683822 -5178805 + L2 LINE L2 2861 2973 -341 192 258 265 30 chr9 112683868 112684000 -5178627 + L2 LINE L2 3044 3206 -107 455 179 104 9 chr9 112684130 112684236 -5178391 + L2 LINE L2 3193 3308 -5 21 0 0 0 chr9 112684867 112684888 -5177739 + AT_rich Low_complexity Low_complexity 1 21 0 257 304 189 58 chr9 112685179 112685206 -5177421 - MIR SINE MIR -27 235 213 1527 167 36 4 chr9 112685206 112685487 -5177140 - AluJo SINE Alu -22 290 1 257 304 189 58 chr9 112685487 112685650 -5176977 - MIR SINE MIR -49 213 20 468 256 45 60 chr9 112686110 112686309 -5176318 - MIR SINE MIR -54 208 13 2207 96 0 13 chr9 112686563 112686864 -5175763 - AluSx SINE Alu -13 299 3 2152 94 3 3 chr9 112687408 112687706 -5174921 - AluSg SINE Alu -12 298 1 2012 136 0 13 chr9 112688189 112688505 -5174122 - AluSx SINE Alu 0 312 1 317 229 14 0 chr9 112690919 112690989 -5171638 - MER33 DNA MER1_type 0 324 254 983 243 0 12 chr9 112691074 112691329 -5171298 - MER33 DNA MER1_type -250 74 1 3524 103 41 4 chr9 112691483 112691976 -5170651 + MER9 LTR ERVK 1 511 0 22 0 0 0 chr9 112692042 112692064 -5170563 + AT_rich Low_complexity Low_complexity 1 22 0 1848 113 75 0 chr9 112692146 112692428 -5170199 - AluJb SINE Alu -9 303 1 2046 119 0 3 chr9 112692514 112692808 -5169819 - AluSx SINE Alu -19 293 1 1858 147 0 3 chr9 112692932 112693225 -5169402 + AluSx SINE Alu 7 298 -14 2193 108 0 0 chr9 112693227 112693533 -5169094 + AluSx SINE Alu 2 307 -5 29 0 0 0 chr9 112693541 112693570 -5169057 + AT_rich Low_complexity Low_complexity 1 29 0 1350 129 9 0 chr9 112694975 112695185 -5167442 - AluSx SINE Alu -1 311 100 775 51 0 0 chr9 112695252 112695350 -5167277 - AluSx SINE Alu -213 99 2 2318 77 0 0 chr9 112696021 112696319 -5166308 + AluY SINE Alu 1 298 -13 1779 144 18 0 chr9 112696922 112697206 -5165421 - AluJo SINE Alu -23 289 1 2154 112 0 10 chr9 112697232 112697544 -5165083 + AluSg SINE Alu 1 309 -1 22 56 0 0 chr9 112697863 112697899 -5164728 + AT_rich Low_complexity Low_complexity 1 36 0 2162 103 7 0 chr9 112698638 112698939 -5163688 - AluSx SINE Alu -9 303 1 215 284 54 14 chr9 112699193 112699267 -5163360 - MIR3 SINE MIR -11 197 121 1994 120 13 0 chr9 112699369 112699670 -5162957 + AluSp SINE Alu 6 310 -3 21 0 0 0 chr9 112699670 112699691 -5162936 + AT_rich Low_complexity Low_complexity 1 21 0 2409 82 0 13 chr9 112701170 112701475 -5161152 - AluY SINE Alu -10 301 1 236 312 151 23 chr9 112701685 112701903 -5160724 + L2 LINE L2 2818 3063 -209 225 209 0 0 chr9 112701986 112702029 -5160598 + A-rich Low_complexity Low_complexity 1 43 0 426 180 18 27 chr9 112702454 112702565 -5160062 - L1MC4a LINE L1 -1859 5949 5840 654 293 90 59 chr9 112702662 112703171 -5159456 + L2 LINE L2 1440 1964 -1350 2542 47 0 7 chr9 112703194 112703493 -5159134 - AluY SINE Alu -4 307 11 2508 79 0 9 chr9 112703509 112703824 -5158803 - AluSx SINE Alu 0 312 1 346 333 40 45 chr9 112703938 112704274 -5158353 + L2 LINE L2 2721 3062 -251 2616 60 0 0 chr9 112704636 112704938 -5157689 + AluSq SINE Alu 1 302 -11 584 236 161 22 chr9 112705420 112705687 -5156940 - L2 LINE L2 -146 3167 2864 235 305 53 53 chr9 112705834 112705929 -5156698 - MIR3 SINE MIR -5 203 109 314 224 272 8 chr9 112706019 112706144 -5156483 - MIR SINE MIR -59 203 46 193 163 82 102 chr9 112706555 112706604 -5156023 + MER5B DNA MER1_type 2 49 -129 247 333 89 11 chr9 112706655 112706835 -5155792 + L1MC4 LINE L1 7748 7941 -101 1598 122 53 4 chr9 112706857 112707250 -5155377 + LTR46 LTR ERV1 1 459 -1 273 241 38 88 chr9 112707435 112707513 -5155114 - MER5B DNA MER1_type -48 130 72 1572 196 17 3 chr9 112707513 112707804 -5154823 - AluJb SINE Alu -17 295 1 273 241 38 88 chr9 112707804 112707857 -5154770 - MER5B DNA MER1_type -106 72 18 21 0 0 0 chr9 112708673 112708694 -5153933 + GC_rich Low_complexity Low_complexity 1 21 0 21 82 0 0 chr9 112708834 112708883 -5153744 + GC_rich Low_complexity Low_complexity 1 49 0 359 327 32 13 chr9 112708938 112709094 -5153533 + MIR SINE MIR 95 253 -9 294 29 0 0 chr9 112710177 112710212 -5152415 + (CA)n Simple_repeat Simple_repeat 2 36 0 196 224 30 0 chr9 112710262 112710329 -5152298 + (TA)n Simple_repeat Simple_repeat 1 69 0 242 113 0 19 chr9 112710909 112710962 -5151665 + (TTTG)n Simple_repeat Simple_repeat 2 53 0 561 281 60 22 chr9 112712226 112712411 -5150216 - MIR3 SINE MIR 0 208 17 187 333 0 0 chr9 112712762 112712816 -5149811 + MIR SINE MIR 209 262 0 375 23 0 0 chr9 112712816 112712860 -5149767 + (CA)n Simple_repeat Simple_repeat 1 44 0 2447 86 3 10 chr9 112714646 112714959 -5147668 - AluSp SINE Alu -2 311 1 2305 102 7 0 chr9 112714959 112715253 -5147374 - AluSx SINE Alu -15 297 1 2432 103 0 0 chr9 112715419 112715729 -5146898 - AluSg SINE Alu 0 310 1 401 266 108 51 chr9 112715849 112716063 -5146564 + MIR SINE MIR 34 259 -3 327 213 16 90 chr9 112716330 112716452 -5146175 + MIR SINE MIR 90 202 -60 1121 178 9 44 chr9 112716484 112716709 -5145918 + MER20 DNA MER1_type 1 217 -2 232 175 0 0 chr9 112718052 112718092 -5144535 - L2 LINE L2 -12 3301 3262 1980 155 3 0 chr9 112718195 112718491 -5144136 + AluJo SINE Alu 1 297 -15 2116 91 10 55 chr9 112718704 112719011 -5143616 + AluSx SINE Alu 18 310 -2 461 315 0 42 chr9 112719030 112719173 -5143454 - L2 LINE L2 0 3272 3136 2274 87 55 0 chr9 112719319 112719608 -5143019 - AluSx SINE Alu -7 305 1 785 174 42 30 chr9 112719669 112719836 -5142791 - MER69A DNA AcHobo 0 177 9 486 63 0 0 chr9 112719944 112720007 -5142620 + U5 snRNA snRNA 1 63 -53 259 284 123 0 chr9 112720242 112720323 -5142304 - L2 LINE L2 -7 3306 3216 2212 119 0 0 chr9 112720330 112720625 -5142002 - AluSq SINE Alu -18 295 1 670 273 115 5 chr9 112721749 112721958 -5140669 - MIR SINE MIR -22 240 9 260 348 68 17 chr9 112722032 112722150 -5140477 - MIR SINE MIR -111 151 28 2082 103 17 0 chr9 112722442 112722733 -5139894 + AluY SINE Alu 1 296 -15 1132 88 0 0 chr9 112725807 112725954 -5136673 + AluSg/x SINE Alu 159 305 -7 854 233 96 38 chr9 112725954 112726268 -5136359 - MLT1B LTR MaLR -58 332 1 1619 152 3 42 chr9 112726310 112726599 -5136028 - AluJo SINE Alu -7 305 28 212 232 0 0 chr9 112726980 112727036 -5135591 + C-rich Low_complexity Low_complexity 1 56 0 378 0 0 0 chr9 112734037 112734079 -5128548 + (CA)n Simple_repeat Simple_repeat 2 43 0 619 277 122 5 chr9 112734780 112734968 -5127659 - MIR SINE MIR -6 256 47 941 262 151 23 chr9 112735034 112735518 -5127109 + L1MC4a LINE L1 5522 6067 -1741 592 217 58 71 chr9 112735581 112735821 -5126806 + L1MC5 LINE L1 7235 7471 -490 247 217 17 0 chr9 112735905 112735965 -5126662 + HAL1b LINE L1 1238 1298 -50 664 250 20 76 chr9 112736001 112736357 -5126270 - L1MC4 LINE L1 0 8042 7707 1425 193 86 7 chr9 112736364 112736644 -5125983 - AluJb SINE Alu -5 307 6 252 316 48 57 chr9 112736709 112736937 -5125690 - L1MC4 LINE L1 -407 7635 7410 977 253 124 88 chr9 112737162 112737526 -5125101 - L1MC4 LINE L1 0 8042 7693 1559 169 86 7 chr9 112737526 112737805 -5124822 - AluJo SINE Alu -6 306 6 977 253 124 88 chr9 112737805 112738341 -5124286 - L1MC4 LINE L1 -349 7693 7085 791 106 14 78 chr9 112738400 112738542 -5124085 - FLAM_C SINE Alu 0 133 1 2210 125 7 0 chr9 112738607 112738912 -5123715 + AluSq SINE Alu 5 311 -2 288 299 86 46 chr9 112739721 112739920 -5122707 + MIR SINE MIR 1 192 -65 530 329 116 46 chr9 112742968 112743422 -5119205 - L2 LINE L2 -4 3268 2778 2008 138 0 36 chr9 112743443 112743748 -5118879 - AluJo SINE Alu -18 294 1 660 313 58 24 chr9 112745521 112745775 -5116852 - L1ME4a LINE L1 -124 5997 5724 1838 156 28 0 chr9 112745775 112746064 -5116563 - AluJb SINE Alu -15 297 1 660 313 58 24 chr9 112746064 112746189 -5116438 - L1ME4a LINE L1 -397 5724 5605 894 211 70 22 chr9 112746467 112746694 -5115933 - MIR SINE MIR -3 259 22 848 275 73 0 chr9 112747262 112747495 -5115132 - MIR SINE MIR -10 252 3 244 200 27 207 chr9 112747847 112747997 -5114630 + MIR3 SINE MIR 83 205 -3 446 259 49 43 chr9 112750279 112750441 -5112186 + MER103 DNA DNA 2 164 -2 576 350 71 18 chr9 112751706 112751986 -5110641 - L3 LINE CR1 -2 1575 1281 854 281 113 48 chr9 112751988 112752048 -5110579 + MLT1J LTR MaLR 22 77 -434 910 127 0 8 chr9 112752048 112752182 -5110445 - FLAM_C SINE Alu 0 133 1 854 281 113 48 chr9 112752182 112752580 -5110047 + MLT1J LTR MaLR 77 510 -1 573 129 20 0 chr9 112754564 112754665 -5107962 - AluY SINE Alu -207 104 2 269 274 147 0 chr9 112754686 112754788 -5107839 - MIR SINE MIR -18 244 128 546 231 154 12 chr9 112755672 112755841 -5106786 + L2 LINE L2 3121 3313 0 1876 141 10 7 chr9 112757581 112757879 -5104748 + AluSx SINE Alu 1 299 -13 2327 79 0 3 chr9 112758003 112758306 -5104321 + AluY SINE Alu 1 302 -9 230 288 72 36 chr9 112758721 112758832 -5103795 + L3 LINE CR1 425 539 -1038 736 261 166 0 chr9 112758908 112759119 -5103508 + MIR SINE MIR 3 248 -14 886 236 8 12 chr9 112759184 112759442 -5103185 - AluJo SINE Alu -44 268 12 701 303 190 13 chr9 112759750 112760140 -5102487 - L3 LINE CR1 -48 1529 1071 1776 139 3 29 chr9 112760184 112760494 -5102133 + AluJb SINE Alu 2 303 -9 700 290 56 91 chr9 112760515 112760977 -5101650 + L2 LINE L2 2827 3272 0 350 264 11 0 chr9 112761398 112761489 -5101138 + MIR3 SINE MIR 113 204 -4 492 282 173 5 chr9 112761495 112761715 -5100912 - MIR SINE MIR -1 261 5 451 319 22 33 chr9 112761790 112762063 -5100564 - L1M4 LINE L1 -1114 5032 4763 336 205 239 17 chr9 112762159 112762276 -5100351 + L1ME4a LINE L1 5974 6116 -5 956 125 45 17 chr9 112762276 112762452 -5100175 - AluSg/x SINE Alu -5 305 125 2168 91 13 7 chr9 112762453 112762762 -5099865 - AluSx SINE Alu -1 311 1 200 149 21 0 chr9 112763172 112763219 -5099408 + (CTGGGG)n Simple_repeat Simple_repeat 3 50 0 191 270 68 54 chr9 112763600 112763674 -5098953 + MIR SINE MIR 70 144 -64 359 276 121 0 chr9 112764204 112764320 -5098307 + L2 LINE L2 3183 3312 -1 200 35 35 0 chr9 112765460 112765489 -5097138 + (TCC)n Simple_repeat Simple_repeat 3 32 0 1060 201 19 0 chr9 112766089 112766303 -5096324 - AluJb SINE Alu -94 218 1 5723 52 15 42 chr9 112766446 112766489 -5096138 - MER4E LTR ERV1 0 766 723 1874 108 41 0 chr9 112766489 112766785 -5095842 - AluSc SINE Alu 0 307 1 5723 52 15 42 chr9 112766785 112767527 -5095100 - MER4E LTR ERV1 -43 723 1 346 279 47 23 chr9 112767652 112767781 -5094846 - MIR SINE MIR -70 192 61 1558 173 33 10 chr9 112768136 112768436 -5094191 - AluJb SINE Alu -5 307 1 250 153 169 34 chr9 112768548 112768607 -5094020 + MLT1J LTR MaLR 101 167 -344 189 0 0 0 chr9 112769142 112769163 -5093464 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 180 167 0 0 chr9 112769309 112769339 -5093288 - MIR SINE MIR -115 147 118 354 264 8 47 chr9 112769380 112769509 -5093118 + AluSg SINE Alu 1 124 -176 308 297 117 43 chr9 112770752 112770795 -5091832 + L1P LINE L1 4054 4092 -2054 2359 95 34 39 chr9 112770795 112771152 -5091475 + THE1A LTR MaLR 1 355 0 308 297 117 43 chr9 112771152 112771376 -5091251 + L1P LINE L1 4092 4298 -1848 2456 77 0 0 chr9 112771376 112771689 -5090938 + AluSq SINE Alu 1 313 0 308 297 117 43 chr9 112771689 112772104 -5090523 + L1P LINE L1 4298 4794 -1352 332 328 32 60 chr9 112772258 112772483 -5090144 + L1MC4a LINE L1 5089 5309 -837 2112 88 3 11 chr9 112772483 112772795 -5089832 + AluSx SINE Alu 1 310 0 332 328 32 60 chr9 112772795 112772818 -5089809 + L1MC4a LINE L1 5309 5331 -815 2145 125 0 0 chr9 112772818 112773129 -5089498 + AluSx SINE Alu 1 311 -1 495 291 85 55 chr9 112773155 112773592 -5089035 + L1MC4a LINE L1 5501 5950 -1858 296 320 55 31 chr9 112774652 112774780 -5087847 - MIR SINE MIR -47 215 85 224 265 59 0 chr9 112775014 112775082 -5087545 - MIR SINE MIR -2 260 189 411 241 105 35 chr9 112775132 112775360 -5087267 - L1ME4a LINE L1 -94 6027 5784 330 190 13 13 chr9 112775425 112775504 -5087123 - L1MC4 LINE L1 -13 8029 7951 943 186 93 8 chr9 112775505 112775753 -5086874 - L1MC4a LINE L1 -637 7171 6903 530 309 64 39 chr9 112776366 112776599 -5086028 + MIR SINE MIR 10 248 -14 191 302 0 0 chr9 112777790 112777843 -5084784 - L2 LINE L2 -2497 817 765 2197 104 7 3 chr9 112778203 112778512 -5084115 + AluSq SINE Alu 1 310 -3 1066 174 4 61 chr9 112779529 112779759 -5082868 + MER20 DNA MER1_type 3 219 0 701 303 190 13 chr9 112782143 112782533 -5080094 - L3 LINE CR1 -48 1529 1071 700 295 69 86 chr9 112782523 112782577 -5080050 + L2 LINE L2 2737 2790 -482 * 1800 136 3 29 chr9 112782577 112782887 -5079740 + AluJb SINE Alu 2 303 -9 700 295 69 86 chr9 112782887 112783370 -5079257 + L2 LINE L2 2790 3272 0 350 264 11 0 chr9 112783791 112783882 -5078745 + MIR3 SINE MIR 113 204 -4 492 282 173 5 chr9 112783888 112784108 -5078519 - MIR SINE MIR -1 261 5 477 330 20 30 chr9 112784183 112784486 -5078141 - L1M4 LINE L1 -1114 5032 4733 336 205 239 17 chr9 112784551 112784668 -5077959 + L1ME4a LINE L1 5974 6116 -5 1873 105 22 44 chr9 112784668 112784846 -5077781 - AluSx SINE Alu -4 308 138 2346 69 0 22 chr9 112784846 112785164 -5077463 - AluY SINE Alu 0 311 1 1873 105 22 44 chr9 112785164 112785300 -5077327 - AluSx SINE Alu -174 138 1 264 344 31 10 chr9 112785374 112785470 -5077157 - L3 LINE CR1 -840 737 640 2020 85 14 11 chr9 112785474 112785791 -5076836 + AluY SINE Alu 1 318 0 836 285 29 20 chr9 112786006 112786252 -5076375 - MIR SINE MIR -12 250 3 4606 122 46 31 chr9 112786604 112786731 -5075896 - MER4E LTR ERV1 -4 775 651 2538 30 0 3 chr9 112786731 112787029 -5075598 - AluY SINE Alu -14 297 1 4606 122 46 31 chr9 112787029 112787665 -5074962 - MER4E LTR ERV1 -128 651 1 217 222 0 0 chr9 112788822 112788867 -5073760 + G-rich Low_complexity Low_complexity 3 47 0 546 231 154 12 chr9 112789896 112790065 -5072562 - L2 LINE L2 0 3313 3121 269 274 147 0 chr9 112790950 112791052 -5071575 + MIR SINE MIR 128 244 -18 2471 44 3 0 chr9 112791072 112791370 -5071257 + AluY SINE Alu 1 299 -12 425 73 0 0 chr9 112792341 112792396 -5070231 - MADE1 DNA Mariner -25 55 1 1569 163 18 7 chr9 112792918 112793201 -5069426 + AluJo SINE Alu 1 286 -26 716 274 161 0 chr9 112793241 112793464 -5069163 - MIR SINE MIR -1 261 3 239 279 72 36 chr9 112793540 112793651 -5068976 - L3 LINE CR1 -1038 539 425 2386 72 0 3 chr9 112794066 112794372 -5068255 - AluY SINE Alu -6 305 1 1891 138 10 7 chr9 112794496 112794794 -5067833 - AluSx SINE Alu -13 299 1 2104 109 0 0 chr9 112795293 112795576 -5067051 + AluSx SINE Alu 1 283 -29 355 286 29 0 chr9 112798546 112798651 -5063976 - MER103 DNA DNA -56 110 3 1834 96 50 7 chr9 112799002 112799283 -5063344 + AluSq SINE Alu 1 293 -20 565 228 102 3 chr9 112799705 112799920 -5062707 - MER106B DNA MER1_type -1 1058 1 1257 133 140 61 chr9 112800015 112800294 -5062333 + AluJb SINE Alu 1 301 -11 1877 122 6 19 chr9 112800768 112801079 -5061548 - AluSx SINE Alu -5 307 1 1090 254 314 33 chr9 112802171 112803182 -5059445 + L2 LINE L2 1938 3293 -20 2056 130 0 19 chr9 112803182 112803498 -5059129 - AluSx SINE Alu -2 310 1 342 270 183 0 chr9 112803561 112803676 -5058951 - L1ME4a LINE L1 -259 5862 5727 724 184 0 44 chr9 112803693 112803829 -5058798 - FLAM_A SINE Alu -3 130 1 209 230 40 14 chr9 112803915 112803989 -5058638 - MIR SINE MIR 0 262 187 493 326 101 4 chr9 112804200 112804427 -5058200 - MIR SINE MIR -13 249 1 759 175 0 29 chr9 112804935 112805072 -5057555 + FLAM_A SINE Alu 1 133 0 562 215 49 49 chr9 112806282 112806445 -5056182 - L1MC5 LINE L1 -36 7925 7763 468 281 39 16 chr9 112806867 112806995 -5055632 - MIR3 SINE MIR -49 159 29 818 134 47 0 chr9 112808215 112808342 -5054285 + AluSg SINE Alu 1 133 -177 1863 125 17 7 chr9 112808342 112808637 -5053990 + AluSx SINE Alu 1 298 -14 22 56 0 0 chr9 112810090 112810126 -5052501 + AT_rich Low_complexity Low_complexity 1 36 0 409 269 78 14 chr9 112812366 112812507 -5050120 + L2 LINE L2 3164 3313 0 528 228 5 173 chr9 112813557 112813604 -5049023 - MER5A DNA MER1_type -21 168 115 2233 81 40 0 chr9 112813604 112813902 -5048725 + AluY SINE Alu 1 310 -1 528 228 5 173 chr9 112813902 112814056 -5048571 - MER5A DNA MER1_type -74 115 1 375 195 12 12 chr9 112815202 112815284 -5047343 + MER58C DNA MER1_type 120 201 -14 813 297 81 18 chr9 112815289 112815854 -5046773 + L1MEc LINE L1 1139 1739 -4657 2388 141 29 50 chr9 112815935 112816390 -5046237 + MER65A LTR ERV1 1 445 0 6439 186 114 98 chr9 112816457 112816977 -5045650 + MER65A-int LTR ERV1 71 581 -4290 2285 92 0 0 chr9 112816977 112817270 -5045357 + AluSc SINE Alu 1 293 -16 6439 186 114 98 chr9 112817270 112817307 -5045320 + MER65A-int LTR ERV1 581 616 -4255 182 256 37 73 chr9 112817307 112817389 -5045238 + L3b LINE CR1 1400 1478 -105 6439 186 114 98 chr9 112817389 112817678 -5044949 + MER65A-int LTR ERV1 616 899 -3972 2255 93 0 3 chr9 112817678 112817979 -5044648 - AluSq SINE Alu -13 300 1 6439 186 114 98 chr9 112817979 112818935 -5043692 + MER65A-int LTR ERV1 899 1838 -3033 2208 110 3 0 chr9 112818935 112819236 -5043391 - AluSx SINE Alu -10 302 1 6439 186 114 98 chr9 112819236 112819523 -5043104 + MER65A-int LTR ERV1 1838 2119 -2752 2248 106 0 0 chr9 112819523 112819825 -5042802 + AluSg SINE Alu 1 302 -8 6439 186 114 98 chr9 112819825 112820046 -5042581 + MER65A-int LTR ERV1 2119 2506 -2365 1641 153 79 94 chr9 112820110 112820823 -5041804 + MER4B-int LTR ERV1 1517 2239 -4359 1804 163 10 0 chr9 112820823 112821112 -5041515 - AluJb SINE Alu -20 292 1 1641 153 79 94 chr9 112821112 112821166 -5041461 + MER4B-int LTR ERV1 2239 3471 -3127 288 231 58 19 chr9 112821249 112821353 -5041274 + MER4B-int LTR ERV1 2369 2476 -4282 548 217 54 43 chr9 112821448 112821632 -5040995 + MER4B-int LTR ERV1 3545 3730 -2868 814 98 11 87 chr9 112821712 112821895 -5040732 + MER4B-int LTR ERV1 3730 3898 -2700 1659 178 0 14 chr9 112821923 112822215 -5040412 - AluJb SINE Alu -20 292 5 195 129 0 0 chr9 112822262 112822293 -5040334 + (TC)n Simple_repeat Simple_repeat 1 31 0 1978 153 0 0 chr9 112822293 112822594 -5040033 - AluSx SINE Alu -11 301 1 951 195 82 64 chr9 112822616 112823005 -5039622 + MER4B-int LTR ERV1 4027 4422 -1909 944 306 51 36 chr9 112823128 112823193 -5039434 + HERV16 LTR ERVL 2199 2262 -2734 2016 130 0 7 chr9 112823193 112823501 -5039126 + AluSx SINE Alu 1 306 -6 944 306 51 36 chr9 112823501 112823883 -5038744 + HERV16 LTR ERVL 2262 2653 -2343 1896 144 16 10 chr9 112824026 112824331 -5038296 + AluSx SINE Alu 1 307 -5 1063 314 104 15 chr9 112824574 112825055 -5037572 + HERV16 LTR ERVL 2643 3166 -2488 324 215 101 0 chr9 112825063 112825142 -5037485 + L1M4 LINE L1 4106 4192 -1954 862 186 0 23 chr9 112825143 112825320 -5037307 + FRAM SINE Alu 1 173 -3 1111 132 9 88 chr9 112825350 112825578 -5037049 + AluJo SINE Alu 87 296 -16 566 273 3 0 chr9 112825660 112825834 -5036793 + L1ME1 LINE L1 5662 5838 -326 262 262 103 16 chr9 112825835 112825961 -5036666 + LTR41 LTR ERVL 1 137 -636 2318 77 3 13 chr9 112825963 112826276 -5036351 + AluSg SINE Alu 1 310 0 418 243 9 18 chr9 112826486 112826597 -5036030 - MER81 DNA DNA -1 113 4 464 270 105 11 chr9 112827248 112827481 -5035146 - L1ME LINE L1 -585 5579 5316 1445 165 113 0 chr9 112827481 112827747 -5034880 + AluJo SINE Alu 1 296 -6 464 270 105 11 chr9 112827747 112827792 -5034835 - L1ME LINE L1 -848 5316 5277 2349 246 140 8 chr9 112827840 112828679 -5033948 - L1ME3 LINE L1 -3 6159 5211 344 342 73 44 chr9 112828713 112828988 -5033639 - L1MEd LINE L1 -5834 285 3 210 143 71 0 chr9 112829005 112829047 -5033580 + CT-rich Low_complexity Low_complexity 4 48 0 1849 142 4 0 chr9 112829050 112829324 -5033303 - AluSx SINE Alu -37 275 1 401 291 47 16 chr9 112829370 112829497 -5033130 + MER5A DNA MER1_type 1 131 -58 471 0 14 55 chr9 112829497 112829570 -5033057 + (TTTA)n Simple_repeat Simple_repeat 2 71 0 1888 97 8 19 chr9 112829579 112829846 -5032781 - AluSq SINE Alu -49 264 1 2089 106 0 3 chr9 112829854 112830163 -5032464 - AluSg SINE Alu 0 308 1 2294 188 32 11 chr9 112830280 112830622 -5032005 + L1M4 LINE L1 4928 5261 -917 1983 109 3 45 chr9 112830622 112830934 -5031693 + AluSc SINE Alu 1 299 -10 2294 188 32 11 chr9 112830934 112831315 -5031312 + L1M4 LINE L1 5261 5677 -501 2185 101 0 0 chr9 112831317 112831613 -5031014 + AluSg SINE Alu 1 296 -14 1293 107 0 25 chr9 112831627 112831824 -5030803 - MSTA LTR MaLR -236 192 1 2007 108 17 0 chr9 112832060 112832348 -5030279 - AluSx SINE Alu -19 293 1 25 83 0 0 chr9 112832351 112832411 -5030216 + AT_rich Low_complexity Low_complexity 1 60 0 5992 149 126 43 chr9 112832454 112833658 -5028969 - MER52A LTR ERV1 0 1755 452 363 225 331 0 chr9 112833692 112833852 -5028775 - MER52A LTR ERV1 -1542 213 1 876 77 0 46 chr9 112834231 112834392 -5028235 - AluYa5 SINE Alu 0 311 157 222 296 117 17 chr9 112835148 112835322 -5027305 + MIR SINE MIR 11 196 -66 706 222 51 11 chr9 112835551 112835727 -5026900 - MER3 DNA MER1_type -26 183 1 2321 90 0 6 chr9 112835742 112836054 -5026573 - AluSg SINE Alu 0 310 1 338 281 85 30 chr9 112836078 112836313 -5026314 - MIR SINE MIR -14 248 1 466 171 0 27 chr9 112837007 112837118 -5025509 + CT-rich Low_complexity Low_complexity 3 110 0 1466 118 179 11 chr9 112837118 112837380 -5025247 - AluSg1 SINE Alu -3 306 1 251 377 0 47 chr9 112837418 112837524 -5025103 - L2 LINE L2 -38 3234 3134 2294 194 78 4 chr9 112838364 112838827 -5023800 + MER74B LTR ERVL 57 553 -69 271 196 167 39 chr9 112838751 112838853 -5023774 - MER54A LTR ERVL -464 437 323 * 469 305 63 6 chr9 112839181 112839355 -5023272 + MIR SINE MIR 31 214 -48 1309 179 90 18 chr9 112839715 112839994 -5022633 - AluJb SINE Alu -13 299 1 412 209 22 13 chr9 112840012 112840192 -5022435 + MER20 DNA MER1_type 2 219 0 186 280 0 20 chr9 112840391 112840441 -5022186 - L2 LINE L2 -1 3312 3264 206 167 24 0 chr9 112840571 112840613 -5022014 + (CAA)n Simple_repeat Simple_repeat 3 45 0 946 141 141 0 chr9 112840766 112840936 -5021691 + Ricksha DNA DNA 143 336 -1710 195 339 40 40 chr9 112841332 112841456 -5021171 + MER5A DNA MER1_type 5 128 -61 3154 202 43 29 chr9 112841850 112842609 -5020018 + Ricksha_b DNA DNA 69 838 -416 663 96 0 0 chr9 112842609 112842703 -5019924 + FLAM_A SINE Alu 45 138 -4 2052 158 27 27 chr9 112842705 112843193 -5019434 + Ricksha_b DNA DNA 1228 1643 -13 420 286 103 42 chr9 112843261 112843572 -5019055 + MLT1K LTR MaLR 137 466 -122 349 281 196 20 chr9 112844781 112844934 -5017693 + MER5A DNA MER1_type 9 188 -1 198 339 28 67 chr9 112844941 112845121 -5017506 + MER5B DNA MER1_type 3 175 -3 585 231 31 0 chr9 112845137 112845267 -5017360 - MER5B DNA MER1_type -7 171 38 1615 154 8 8 chr9 112845279 112845545 -5017082 + AluJo SINE Alu 16 281 -31 2004 122 0 3 chr9 112845558 112845845 -5016782 + AluSx SINE Alu 1 286 -26 291 167 0 0 chr9 112845859 112845907 -5016720 + MER5B DNA MER1_type 131 178 0 1863 180 29 53 chr9 112846311 112846667 -5015960 + L1MB4 LINE L1 5427 5790 -390 1826 132 145 0 chr9 112846667 112846971 -5015656 - MER7A DNA MER2_type 0 346 1 1863 180 29 53 chr9 112846971 112846997 -5015630 + L1MB4 LINE L1 5790 5801 -379 2186 100 0 7 chr9 112846997 112847297 -5015330 - AluSx SINE Alu -12 300 3 1863 180 29 53 chr9 112847297 112847324 -5015303 + L1MB4 LINE L1 5801 5827 -353 319 284 113 53 chr9 112848958 112849001 -5013626 + L1M4 LINE L1 4054 4093 -2053 2359 95 34 39 chr9 112849001 112849358 -5013269 + THE1A LTR MaLR 1 355 0 319 284 113 53 chr9 112849358 112849583 -5013044 + L1M4 LINE L1 4093 4303 -1843 2439 80 0 0 chr9 112849583 112849896 -5012731 + AluSq SINE Alu 1 313 0 319 284 113 53 chr9 112849896 112850320 -5012307 + L1M4 LINE L1 4303 4794 -1352 21 0 0 0 chr9 112850643 112850664 -5011963 + AT_rich Low_complexity Low_complexity 1 21 0 2200 109 0 3 chr9 112850699 112850983 -5011644 + AluSx SINE Alu 1 283 -29 296 264 38 19 chr9 112853951 112854057 -5008570 - MER103 DNA DNA -56 110 3 1956 96 50 7 chr9 112854408 112854689 -5007938 + AluSq SINE Alu 1 293 -20 479 228 88 0 chr9 112855111 112855247 -5007380 - MER106B DNA MER1_type -1 1058 911 399 258 65 0 chr9 112855357 112855481 -5007146 + FLAM_A SINE Alu 2 133 0 2182 110 7 7 chr9 112855958 112856266 -5006361 - AluSx SINE Alu -4 308 1 818 257 200 3 chr9 112857358 112857693 -5004934 + L2 LINE L2 1938 2338 -976 380 299 176 27 chr9 112857694 112857955 -5004672 + L2 LINE L2 2542 2841 -473 2221 95 3 0 chr9 112858566 112858851 -5003776 - AluSx SINE Alu -26 286 1 285 133 50 0 chr9 112858851 112858911 -5003716 + L1MB7 LINE L1 6112 6174 -10 201 74 0 0 chr9 112858930 112858957 -5003670 + (CATATA)n Simple_repeat Simple_repeat 4 30 0 2322 55 0 31 chr9 112859346 112859461 -5003166 + AluY SINE Alu 21 138 -173 477 0 0 0 chr9 112859461 112859514 -5003113 + (TA)n Simple_repeat Simple_repeat 1 53 0 2322 55 0 31 chr9 112859514 112859691 -5002936 + AluY SINE Alu 138 304 -7 23 0 0 0 chr9 112859844 112859867 -5002760 + AT_rich Low_complexity Low_complexity 1 23 0 2146 94 29 0 chr9 112859867 112860194 -5002433 + AluSx SINE Alu 1 335 0 207 278 72 10 chr9 112860332 112860429 -5002198 + L2 LINE L2 3210 3312 -1 233 29 29 0 chr9 112860538 112860572 -5002055 + (TTA)n Simple_repeat Simple_repeat 2 36 0 2018 130 3 7 chr9 112860574 112860873 -5001754 - AluSx SINE Alu -14 298 1 189 0 0 0 chr9 112861090 112861111 -5001516 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 250 153 169 34 chr9 112861466 112861525 -5001102 - MLT1J LTR MaLR -344 167 101 1710 166 33 10 chr9 112861637 112861938 -5000689 + AluJb SINE Alu 1 308 -4 288 310 31 8 chr9 112862292 112862421 -5000206 + MIR SINE MIR 61 192 -70 5742 52 15 42 chr9 112862546 112863288 -4999339 + MER4E LTR ERV1 1 723 -43 2023 100 41 0 chr9 112863288 112863584 -4999043 + AluSc SINE Alu 1 307 0 5742 52 15 42 chr9 112863584 112863627 -4999000 + MER4E LTR ERV1 723 766 0 1916 138 13 13 chr9 112863770 112864068 -4998559 + AluJb SINE Alu 1 298 -14 1561 190 146 6 chr9 112864619 112864940 -4997687 + MLT2D LTR ERVL 1 380 -34 471 35 0 0 chr9 112864940 112864997 -4997630 + (CA)n Simple_repeat Simple_repeat 2 58 0 1561 190 146 6 chr9 112864997 112865038 -4997589 + MLT2D LTR ERVL 380 414 0 2711 214 25 82 chr9 112865104 112865196 -4997431 + L1MCa LINE L1 1511 1607 -5000 1729 187 3 10 chr9 112865196 112865496 -4997131 + AluJo SINE Alu 1 298 -14 2711 214 25 82 chr9 112865496 112865771 -4996856 + L1MCa LINE L1 1607 1896 -4711 2292 99 0 3 chr9 112865771 112866064 -4996563 + AluSc SINE Alu 1 292 -17 1628 142 0 73 chr9 112866066 112866183 -4996444 + AluJb SINE Alu 1 125 -187 2101 157 0 0 chr9 112866183 112866495 -4996132 - AluSx SINE Alu 0 312 1 1628 142 0 73 chr9 112866495 112866665 -4995962 + AluJb SINE Alu 125 267 -45 2711 214 25 82 chr9 112866665 112866824 -4995803 + L1MCa LINE L1 1897 2063 -4544 2138 101 37 10 chr9 112866824 112867122 -4995505 - AluSc SINE Alu -3 306 1 2068 130 0 3 chr9 112867124 112867417 -4995210 - AluSx SINE Alu -20 292 1 2711 214 25 82 chr9 112867417 112867749 -4994878 + L1MCa LINE L1 2064 2501 -4106 830 276 143 38 chr9 112867765 112868182 -4994445 + L1M4 LINE L1 3721 4229 -1917 1645 212 33 0 chr9 112868182 112868484 -4994143 + AluJo SINE Alu 1 312 0 830 276 143 38 chr9 112868484 112868704 -4993923 + L1M4 LINE L1 4229 4425 -1721 1806 168 7 3 chr9 112868719 112869017 -4993610 + AluJo SINE Alu 1 299 -13 240 171 43 57 chr9 112869076 112869146 -4993481 - LTR16B LTR ERVL -97 367 299 903 258 67 15 chr9 112869300 112869568 -4993059 - LTR16B LTR ERVL -176 288 7 1671 166 53 7 chr9 112869646 112869763 -4992864 + AluJb SINE Alu 1 111 -201 180 0 0 0 chr9 112869763 112869783 -4992844 + (TAAAA)n Simple_repeat Simple_repeat 4 23 0 1671 166 53 7 chr9 112869783 112869969 -4992658 + AluJb SINE Alu 111 312 0 213 59 78 39 chr9 112870064 112870115 -4992512 + (TAGTG)n Simple_repeat Simple_repeat 1 53 0 954 61 0 0 chr9 112870116 112870230 -4992397 + AluSg/x SINE Alu 185 298 -11 227 91 0 0 chr9 112870237 112870270 -4992357 - Alu SINE Alu -268 33 1 240 333 32 16 chr9 112870439 112870565 -4992062 - L2 LINE L2 -183 3089 2962 1789 159 7 0 chr9 112870660 112870937 -4991690 - AluJo SINE Alu -17 295 17 535 93 10 10 chr9 112871426 112871523 -4991104 + (TG)n Simple_repeat Simple_repeat 1 97 0 281 319 43 29 chr9 112871623 112871761 -4990866 - LTR33 LTR ERVL -69 452 313 497 296 88 41 chr9 112872314 112872670 -4989957 - MLT1K LTR MaLR -16 572 192 2432 120 33 67 chr9 112872670 112872955 -4989672 + MER57B LTR ERV1 1 267 -167 2269 115 3 0 chr9 112872955 112873259 -4989368 - AluSq SINE Alu -8 305 1 2432 120 33 67 chr9 112873259 112873422 -4989205 + MER57B LTR ERV1 267 434 0 497 296 88 41 chr9 112873422 112873484 -4989143 - MLT1K LTR MaLR -396 192 134 262 238 36 24 chr9 112874413 112874497 -4988130 - MIR SINE MIR -64 198 114 254 235 7 56 chr9 112874643 112874779 -4987848 + MER91A DNA MER1_type 11 195 -1 201 349 0 0 chr9 112874903 112874989 -4987638 + L2 LINE L2 2892 2977 -337 384 121 197 0 chr9 112875012 112875078 -4987549 - MADE1 DNA Mariner 0 80 2 328 293 113 0 chr9 112875257 112875390 -4987237 - MIR SINE MIR -19 243 96 579 285 16 32 chr9 112877037 112877286 -4985341 - MIR SINE MIR 0 262 18 192 143 0 0 chr9 112878487 112878522 -4984105 - MER5B DNA MER1_type -143 35 1 216 249 51 0 chr9 112878824 112878895 -4983732 + MIR3 SINE MIR 78 154 -54 310 269 206 40 chr9 112880023 112880246 -4982381 - MIR SINE MIR -1 261 2 22 35 0 0 chr9 112880517 112880546 -4982081 + AT_rich Low_complexity Low_complexity 1 29 0 638 208 189 0 chr9 112880825 112880984 -4981643 - MER5A DNA MER1_type 0 189 1 1806 162 0 26 chr9 112882768 112883077 -4979550 + AluJb SINE Alu 1 301 -11 2265 103 3 0 chr9 112883332 112883622 -4979005 - AluSp SINE Alu -22 291 1 1763 173 19 7 chr9 112884367 112884674 -4977953 + AluJo SINE Alu 1 311 -1 226 316 81 37 chr9 112884709 112884981 -4977646 - L2 LINE L2 -39 3274 2991 510 293 9 42 chr9 112885202 112885417 -4977210 - MIR SINE MIR -32 230 23 299 243 175 58 chr9 112885469 112885658 -4976969 + L3 LINE CR1 1357 1567 -10 261 286 137 31 chr9 112885903 112886064 -4976563 - MIR SINE MIR -15 247 70 323 235 189 59 chr9 112886160 112886313 -4976314 - MER5B DNA MER1_type -5 173 1 2223 117 0 7 chr9 112887418 112887718 -4974909 + AluSx SINE Alu 1 298 -14 546 246 201 65 chr9 112887928 112888551 -4974076 - L2 LINE L2 -239 3074 2361 321 26 0 0 chr9 112889249 112889287 -4973340 - tRNA-Gly-GGA tRNA tRNA -37 38 1 2321 114 3 0 chr9 112890171 112890478 -4972149 - AluSx SINE Alu -4 308 1 397 203 133 56 chr9 112890533 112890676 -4971951 - MER5A DNA MER1_type -1 188 35 321 259 160 23 chr9 112890567 112890698 -4971929 + MER5A DNA MER1_type 40 188 -1 * 204 40 0 0 chr9 112890780 112890805 -4971822 + (CACAT)n Simple_repeat Simple_repeat 5 29 0 262 239 53 128 chr9 112890828 112891071 -4971556 + MIR SINE MIR 1 225 -37 308 214 133 0 chr9 112892317 112892415 -4970212 + L1MC4a LINE L1 5359 5469 -2339 336 291 73 42 chr9 112892523 112892951 -4969676 + L1MC4a LINE L1 5677 6117 -4 2308 99 0 13 chr9 112892960 112893264 -4969363 + AluSc SINE Alu 1 300 -9 2078 95 39 7 chr9 112893814 112894099 -4968528 + AluSq SINE Alu 1 294 -19 788 226 0 18 chr9 112894435 112894603 -4968024 - FRAM SINE Alu -1 165 1 23 0 0 0 chr9 112896711 112896734 -4965893 + AT_rich Low_complexity Low_complexity 1 23 0 191 324 149 0 chr9 112898334 112898408 -4964219 - L2 LINE L2 -3 3269 3185 1372 164 1 7 chr9 112899061 112899309 -4963318 - L1MB8 LINE L1 -148 6020 5777 643 247 112 77 chr9 112899812 112900241 -4962386 + HAL1 LINE L1 365 808 -1699 295 324 85 45 chr9 112900261 112900437 -4962190 - L1ME3A LINE L1 -27 6143 5961 630 206 136 5 chr9 112901001 112901185 -4961442 - HAL1 LINE L1 -625 1882 1675 535 224 97 48 chr9 112901189 112901417 -4961210 - HAL1 LINE L1 -904 1603 1365 1502 183 136 0 chr9 112901515 112901816 -4960811 + MER7A DNA MER2_type 7 346 0 319 328 43 9 chr9 112901817 112901933 -4960694 - HAL1 LINE L1 -1539 968 849 1343 292 67 41 chr9 112902037 112902726 -4959901 - HAL1 LINE L1 -1798 709 3 1678 237 136 46 chr9 112902787 112903155 -4959472 + HAL1 LINE L1 862 1195 -1312 2210 115 0 3 chr9 112903155 112903459 -4959168 + AluSx SINE Alu 1 303 -9 1678 237 136 46 chr9 112903459 112904534 -4958093 + HAL1 LINE L1 1195 2477 -30 534 249 53 0 chr9 112904534 112904703 -4957924 - MER104 DNA MER2_type 0 180 3 1678 237 136 46 chr9 112904703 112904737 -4957890 + HAL1 LINE L1 2477 2507 0 682 184 0 0 chr9 112905460 112905574 -4957053 - FLAM_A SINE Alu -14 128 15 1616 153 59 17 chr9 112905584 112905750 -4956877 - AluJb SINE Alu -12 300 116 198 0 0 0 chr9 112905750 112905772 -4956855 + (TTG)n Simple_repeat Simple_repeat 3 24 0 1616 153 59 17 chr9 112905772 112905893 -4956734 - AluJb SINE Alu -196 116 1 1656 166 19 39 chr9 112905903 112906210 -4956417 - AluSx SINE Alu -11 301 1 307 190 423 0 chr9 112906242 112906379 -4956248 - L1ME1 LINE L1 -13 6153 5959 392 263 161 48 chr9 112906398 112906584 -4956043 - L1ME1 LINE L1 -333 5788 5582 2197 103 0 3 chr9 112906587 112906909 -4955718 + AluSx SINE Alu 1 321 0 189 0 0 0 chr9 112906939 112906960 -4955667 + (T)n Simple_repeat Simple_repeat 1 21 0 247 245 0 0 chr9 112907205 112907254 -4955373 - MER5B DNA MER1_type 0 178 130 617 187 33 33 chr9 112907264 112907414 -4955213 - AluSg/x SINE Alu -23 287 138 521 244 68 41 chr9 112907411 112907632 -4954995 - AluYb8 SINE Alu -90 228 2 * 2177 116 11 42 chr9 112907635 112907661 -4954966 + L1MB3 LINE L1 5806 5831 -352 2258 77 42 0 chr9 112907661 112907948 -4954679 + AluY SINE Alu 1 299 -12 2177 116 11 42 chr9 112907948 112908301 -4954326 + L1MB3 LINE L1 5831 6173 -10 1971 243 60 12 chr9 112908477 112909062 -4953565 + L1M4 LINE L1 3572 4184 -1962 2423 82 0 0 chr9 112909203 112909497 -4953130 - AluY SINE Alu -17 294 1 23 33 0 0 chr9 112909562 112909592 -4953035 + AT_rich Low_complexity Low_complexity 1 30 0 1846 152 16 20 chr9 112909898 112910201 -4952426 - AluJb SINE Alu -10 302 1 2257 112 33 3 chr9 112910314 112910618 -4952009 + AluSq SINE Alu 1 313 0 757 193 0 15 chr9 112910757 112910892 -4951735 + FLAM_A SINE Alu 1 133 0 444 263 196 22 chr9 112911101 112911280 -4951347 + MER63A DNA MER1_type 1 210 0 181 295 0 33 chr9 112911281 112911342 -4951285 - MIR SINE MIR -83 179 121 648 248 35 58 chr9 112911353 112911579 -4951048 - MIR SINE MIR -28 234 14 186 43 0 0 chr9 112912777 112912800 -4949827 + (TTTTTG)n Simple_repeat Simple_repeat 3 25 0 1012 168 23 9 chr9 112912816 112913030 -4949597 - L1MB8 LINE L1 -38 6140 5924 250 276 0 0 chr9 112913074 112913132 -4949495 + MIR SINE MIR 161 218 -44 694 205 20 0 chr9 112913161 112913312 -4949315 - L1MB8 LINE L1 -290 5894 5741 1884 145 24 27 chr9 112913314 112913610 -4949017 - AluJb SINE Alu -11 301 7 447 320 94 0 chr9 112913936 112914139 -4948488 - MIR SINE MIR -40 222 1 405 306 19 32 chr9 112914845 112915002 -4947625 - MIR SINE MIR -14 248 94 216 171 0 0 chr9 112917356 112917391 -4945236 + (CA)n Simple_repeat Simple_repeat 1 35 0 197 355 168 0 chr9 112918116 112918223 -4944404 - MIR SINE MIR -42 220 96 2214 91 0 47 chr9 112918299 112918597 -4944030 - AluSc SINE Alu -24 285 2 1962 101 65 4 chr9 112918598 112918876 -4943751 - AluSx SINE Alu -17 295 1 32 0 0 0 chr9 112918893 112918925 -4943702 + AT_rich Low_complexity Low_complexity 1 32 0 2092 94 64 0 chr9 112918979 112919274 -4943353 + AluSq SINE Alu 1 312 0 468 241 9 35 chr9 112919679 112919795 -4942832 - L2 LINE L2 0 3272 3160 2292 71 7 0 chr9 112920016 112920317 -4942310 - AluSq SINE Alu 0 305 3 393 339 35 17 chr9 112920343 112920517 -4942110 - MIR SINE MIR -48 214 38 240 338 0 0 chr9 112920637 112920708 -4941919 - MIR SINE MIR -70 192 122 2192 82 0 0 chr9 112921295 112921564 -4941063 - AluSx SINE Alu -43 269 1 2417 82 16 0 chr9 112922248 112922551 -4940076 + AluSx SINE Alu 2 309 -3 491 125 62 0 chr9 112922622 112922702 -4939925 + AluSg/x SINE Alu 215 299 -13 2221 122 6 10 chr9 112922976 112923287 -4939340 - AluSx SINE Alu -2 310 1 234 219 132 53 chr9 112923314 112923401 -4939226 + L1ME4a LINE L1 5968 6067 -54 2489 61 7 0 chr9 112923401 112923698 -4938929 - AluY SINE Alu -12 299 1 234 219 132 53 chr9 112923698 112923724 -4938903 + L1ME4a LINE L1 6067 6090 -31 578 297 138 49 chr9 112923770 112924197 -4938430 + L2 LINE L2 2849 3313 0 210 246 54 0 chr9 112924320 112924389 -4938238 - MIR SINE MIR -62 146 73 321 317 117 11 chr9 112925005 112925185 -4937442 - MIR SINE MIR -63 199 1 2401 101 3 0 chr9 112925936 112926244 -4936383 - AluSq SINE Alu 0 313 5 261 234 66 144 chr9 112926592 112926759 -4935868 + L2 LINE L2 3119 3272 0 2358 89 3 0 chr9 112926918 112927210 -4935417 - AluSq SINE Alu -15 298 6 266 303 30 30 chr9 112928694 112928793 -4933834 - MIR SINE MIR -56 206 108 292 292 31 68 chr9 112929482 112929586 -4933041 - L1ME LINE L1 -650 5514 5419 2002 134 0 29 chr9 112929586 112929899 -4932728 - AluSx SINE Alu 0 312 9 292 292 31 68 chr9 112929899 112929986 -4932641 - L1ME LINE L1 -745 5419 5330 381 129 0 29 chr9 112929993 112930063 -4932564 - L1MB7 LINE L1 -4 6180 6113 1959 156 10 3 chr9 112930064 112930371 -4932256 + AluJb SINE Alu 1 309 -3 2287 296 72 44 chr9 112930414 112931337 -4931290 - L1ME LINE L1 -803 5343 4447 970 171 13 0 chr9 112931337 112931495 -4931132 - FRAM SINE Alu -6 160 1 2287 296 72 44 chr9 112931495 112932402 -4930225 - L1ME LINE L1 -1699 4447 3458 2123 137 16 0 chr9 112932402 112932709 -4929918 - AluSx SINE Alu 0 312 1 2287 296 72 44 chr9 112932709 112932926 -4929701 - L1ME LINE L1 -2688 3458 3249 365 223 11 0 chr9 112932927 112933021 -4929606 + CT-rich Low_complexity Low_complexity 1 95 0 2137 145 0 0 chr9 112933021 112933317 -4929310 - AluSx SINE Alu -16 296 1 335 237 25 85 chr9 112933318 112933436 -4929191 - L1ME LINE L1 -2877 3269 3159 2348 167 47 33 chr9 112933599 112933795 -4928832 + L1MA4 LINE L1 3 195 -6973 1820 106 106 0 chr9 112933795 112934051 -4928576 + AluSx SINE Alu 27 309 -3 2348 167 47 33 chr9 112934051 112934364 -4928263 + L1MA4 LINE L1 195 519 -6649 * 12235 145 33 34 chr9 112934361 112934576 -4928051 + L1MA4 LINE L1 3767 3981 -3340 2443 170 2 12 chr9 112934576 112934981 -4927646 + MER57A LTR ERV1 3 403 0 12235 145 33 34 chr9 112934981 112935165 -4927462 + L1MA4 LINE L1 3981 4164 -3157 1827 169 0 40 chr9 112935165 112935490 -4927137 + AluJb SINE Alu 1 312 0 12235 145 33 34 chr9 112935490 112935896 -4926731 + L1MA4 LINE L1 4164 4569 -2752 282 130 0 0 chr9 112935896 112935942 -4926685 - MADE1 DNA Mariner -34 46 1 12235 145 33 34 chr9 112935942 112936158 -4926469 + L1MA4 LINE L1 4569 4784 -2537 2353 107 3 3 chr9 112936158 112936468 -4926159 + AluSx SINE Alu 1 310 -2 12235 145 33 34 chr9 112936468 112936652 -4925975 + L1MA4 LINE L1 4784 4967 -2354 839 138 0 36 chr9 112936652 112936790 -4925837 + FLAM_A SINE Alu 1 133 0 12235 145 33 34 chr9 112936790 112937273 -4925354 + L1MA4 LINE L1 4967 5449 -1872 1813 187 0 7 chr9 112937273 112937567 -4925060 - AluJo SINE Alu -20 292 1 12235 145 33 34 chr9 112937567 112939402 -4923225 + L1MA4 LINE L1 5449 7316 -5 2398 86 7 0 chr9 112939416 112939718 -4922909 - AluSp SINE Alu -9 304 1 498 269 53 59 chr9 112939735 112940058 -4922569 + L1MC4a LINE L1 5609 5929 -1879 388 256 111 28 chr9 112940317 112940497 -4922130 + MIR3 SINE MIR 2 196 -12 316 311 57 29 chr9 112942213 112942422 -4920205 + MIR SINE MIR 13 227 -35 2545 70 48 28 chr9 112942945 112943302 -4919325 - THE1B LTR MaLR 0 364 1 1747 234 112 54 chr9 112943381 112943430 -4919197 + L2 LINE L2 2252 2297 -1016 1646 170 103 20 chr9 112943430 112943788 -4918839 + MLT1B LTR MaLR 1 388 -2 1747 234 112 54 chr9 112943788 112944761 -4917866 + L2 LINE L2 2297 3313 0 474 307 29 0 chr9 112944765 112944905 -4917722 - MIR SINE MIR -113 149 6 344 294 189 0 chr9 112944970 112945171 -4917456 - L2 LINE L2 -219 3053 2815 23 0 0 0 chr9 112945540 112945563 -4917064 + AT_rich Low_complexity Low_complexity 1 23 0 2262 114 6 19 chr9 112946445 112946761 -4915866 - AluSx SINE Alu 0 312 1 594 229 158 0 chr9 112947936 112948119 -4914508 + MER74C LTR ERVL 14 225 -235 318 307 93 0 chr9 112948421 112948561 -4914066 - MIR SINE MIR -20 242 90 200 323 21 32 chr9 112948789 112948882 -4913745 - MIR SINE MIR -111 151 60 23 0 0 0 chr9 112950251 112950274 -4912353 + AT_rich Low_complexity Low_complexity 1 23 0 189 74 0 0 chr9 112950460 112950487 -4912140 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1092 122 0 0 chr9 112950492 112950639 -4911988 - FRAM SINE Alu -30 146 1 202 203 13 114 chr9 112950813 112950892 -4911735 - MIR SINE MIR -72 190 120 252 59 0 0 chr9 112952301 112952335 -4910292 + (TTTC)n Simple_repeat Simple_repeat 2 35 0 33 43 0 0 chr9 112952695 112952742 -4909885 + AT_rich Low_complexity Low_complexity 1 47 0 2427 92 3 0 chr9 112953560 112953864 -4908763 + AluSq SINE Alu 1 305 -8 1696 191 78 34 chr9 112954125 112954601 -4908026 + MLT1D LTR MaLR 7 503 -2 489 316 97 51 chr9 112954862 112955313 -4907314 + HAL1b LINE L1 70 420 -997 2158 116 24 0 chr9 112955390 112955684 -4906943 + AluSx SINE Alu 1 301 -11 236 146 0 21 chr9 112955684 112955732 -4906895 + (GGAA)n Simple_repeat Simple_repeat 1 47 0 406 276 68 37 chr9 112955806 112956100 -4906527 + HAL1b LINE L1 546 848 -569 2356 91 3 0 chr9 112956258 112956555 -4906072 - AluSg SINE Alu -12 298 1 300 215 15 0 chr9 112956887 112956952 -4905675 + HAL1 LINE L1 818 883 -1693 5088 223 66 76 chr9 112957037 112958934 -4903693 + HAL1 LINE L1 1 1878 -629 756 289 57 27 chr9 112958971 112959372 -4903255 + HAL1 LINE L1 1746 2158 -418 486 314 14 24 chr9 112959403 112959613 -4903014 - MLT1J LTR MaLR -295 216 9 385 250 112 0 chr9 112959990 112960106 -4902521 + L1 LINE L1 3648 3776 -2370 2498 65 3 0 chr9 112960168 112960462 -4902165 + AluY SINE Alu 1 295 -16 2266 117 7 0 chr9 112960470 112960778 -4901849 + AluSx SINE Alu 1 310 -2 898 171 131 66 chr9 112960802 112961163 -4901464 - MLT1E2 LTR MaLR -58 447 56 2473 67 3 3 chr9 112961408 112961705 -4900922 - AluY SINE Alu -14 297 1 274 296 54 44 chr9 112961848 112962142 -4900485 + L1ME4a LINE L1 4150 4446 -1700 2199 97 51 38 chr9 112962209 112962579 -4900048 - THE1C LTR MaLR 0 375 1 369 326 75 44 chr9 112962579 112962806 -4899821 + L1ME4a LINE L1 4566 4799 -1347 1787 197 13 17 chr9 112962838 112963300 -4899327 + MER89 LTR ERV1 1 559 0 350 258 30 30 chr9 112963377 112963509 -4899118 + L1ME4a LINE L1 4920 5051 -1095 193 189 81 0 chr9 112963594 112963631 -4898996 - MIR SINE MIR -139 69 30 1437 178 42 2 chr9 112964226 112964537 -4898090 - MLT1A1 LTR MaLR -1 373 1 338 317 87 59 chr9 112965524 112965846 -4896781 + L2 LINE L2 2923 3253 -19 267 278 48 32 chr9 112965928 112966054 -4896573 + MIR SINE MIR 17 144 -64 347 316 151 33 chr9 112966759 112967031 -4895596 - L2 LINE L2 -4 3309 3006 438 259 30 52 chr9 112967193 112967328 -4895299 - MIR3 SINE MIR -34 174 43 699 256 68 53 chr9 112967523 112967878 -4894749 + L1ME4a LINE L1 5562 5921 -200 335 77 0 19 chr9 112967908 112967960 -4894667 + (CA)n Simple_repeat Simple_repeat 2 52 0 234 331 48 40 chr9 112968326 112968450 -4894177 + L2 LINE L2 3188 3312 -1 240 189 21 11 chr9 112970677 112970772 -4891855 + (CA)n Simple_repeat Simple_repeat 2 97 0 2305 105 0 19 chr9 112972055 112972370 -4890257 - AluSx SINE Alu -3 309 1 763 248 29 66 chr9 112972851 112973093 -4889534 - MIR SINE MIR -7 255 23 337 266 52 121 chr9 112973409 112973796 -4888831 + MLT1G LTR MaLR 1 360 -195 575 271 12 0 chr9 112973906 112974072 -4888555 + MLT1G LTR MaLR 419 586 -4 2536 60 11 26 chr9 112974074 112974423 -4888204 - THE1C LTR MaLR -31 344 1 21 0 0 0 chr9 112974510 112974531 -4888096 + AT_rich Low_complexity Low_complexity 1 21 0 260 310 28 36 chr9 112974740 112974867 -4887760 - MIR SINE MIR -63 145 20 2456 70 13 0 chr9 112974972 112975270 -4887357 + AluSc SINE Alu 1 302 -7 252 0 0 0 chr9 112977244 112977272 -4885355 + (TG)n Simple_repeat Simple_repeat 2 29 0 236 320 28 75 chr9 112982135 112982307 -4880320 + L1MC/D LINE L1 5320 5478 -2330 2158 181 94 38 chr9 112982307 112982783 -4879844 + MLT1D LTR MaLR 3 505 0 236 320 28 75 chr9 112982783 112982863 -4879764 + L1MC/D LINE L1 5478 5560 -2248 308 215 15 0 chr9 112983019 112983100 -4879527 - L1MC4 LINE L1 0 8042 7726 2080 118 10 26 chr9 112983373 112983679 -4878948 - AluSx SINE Alu -7 305 5 229 267 105 19 chr9 112984919 112985024 -4877603 + MIR3 SINE MIR 64 177 -31 2225 137 0 3 chr9 112985256 112985569 -4877058 + AluJb SINE Alu 1 312 0 2125 116 18 0 chr9 112986559 112986844 -4875783 + AluSx SINE Alu 23 312 0 185 247 140 43 chr9 112986907 112987000 -4875627 + L2 LINE L2 3170 3271 -1 2296 119 0 3 chr9 112987333 112987644 -4874983 + AluSx SINE Alu 1 310 -2 186 184 26 26 chr9 112987664 112987702 -4874925 - L2 LINE L2 -23 3249 3212 * 603 256 178 6 chr9 112987676 112987856 -4874771 - MIR SINE MIR -29 233 23 4008 264 71 54 chr9 112987859 112989968 -4872659 + L1MEc LINE L1 38 2110 -4105 910 187 32 0 chr9 112989968 112990123 -4872504 + FRAM SINE Alu 1 160 -6 4008 264 71 54 chr9 112990123 112990365 -4872262 + L1MEc LINE L1 2110 2346 -3869 2140 148 30 0 chr9 112990365 112990697 -4871930 - MER2 DNA MER2_type 0 344 3 4008 264 71 54 chr9 112990697 112991180 -4871447 + L1MEc LINE L1 2346 2977 -3238 1587 136 64 4 chr9 112991180 112991431 -4871196 + AluJo SINE Alu 43 308 -4 231 36 0 0 chr9 112991432 112991460 -4871167 + (GGAA)n Simple_repeat Simple_repeat 1 28 0 453 333 101 28 chr9 112991471 112991789 -4870838 - L1ME4a LINE L1 -62 6059 5719 265 317 49 14 chr9 112991800 112991942 -4870685 - L1ME4a LINE L1 -439 5682 5536 21 36 0 0 chr9 112992695 112992723 -4869904 + AT_rich Low_complexity Low_complexity 1 28 0 335 238 71 0 chr9 112992938 112993022 -4869605 - L1MC4 LINE L1 -1339 6703 6614 328 299 23 0 chr9 112992972 112993059 -4869568 + L1MC4 LINE L1 6614 6702 -1340 * 359 315 0 0 chr9 112993060 112993149 -4869478 + L1MC4 LINE L1 6614 6702 -1340 359 315 0 0 chr9 112993150 112993239 -4869388 + L1MC4 LINE L1 6614 6702 -1340 359 315 0 0 chr9 112993240 112993329 -4869298 + L1MC4 LINE L1 6614 6702 -1340 359 315 0 0 chr9 112993330 112993419 -4869208 + L1MC4 LINE L1 6614 6702 -1340 359 315 0 0 chr9 112993420 112993509 -4869118 + L1MC4 LINE L1 6614 6702 -1340 359 315 0 0 chr9 112993510 112993599 -4869028 + L1MC4 LINE L1 6614 6702 -1340 316 280 19 56 chr9 112993600 112993707 -4868920 + L1MC4 LINE L1 6614 6716 -1326 1077 159 27 45 chr9 112995767 112995987 -4866640 - MER20 DNA MER1_type -3 216 1 274 356 7 41 chr9 112996140 112996286 -4866341 - MIR SINE MIR -31 231 91 26 0 0 0 chr9 112996602 112996628 -4865999 + AT_rich Low_complexity Low_complexity 1 26 0 482 312 22 43 chr9 112997351 112997582 -4865045 - MIR SINE MIR -1 261 36 429 235 123 49 chr9 112998588 112998792 -4863835 - MIR SINE MIR -19 243 25 2369 104 0 3 chr9 113000251 113000550 -4862077 - AluSq SINE Alu -15 298 1 363 352 28 0 chr9 113000627 113000806 -4861821 - L1ME LINE L1 -301 5820 5637 872 143 7 14 chr9 113001007 113001147 -4861480 - AluJo SINE Alu -173 139 1 646 329 103 32 chr9 113001164 113001947 -4860680 - L1ME4a LINE L1 -7 6114 5260 301 301 108 17 chr9 113002507 113002683 -4859944 - L1ME4a LINE L1 -1488 4658 4467 1955 155 0 22 chr9 113003067 113003384 -4859243 + AluJo SINE Alu 3 312 0 189 0 0 0 chr9 113003441 113003462 -4859165 + (A)n Simple_repeat Simple_repeat 1 21 0 2225 103 0 13 chr9 113006164 113006464 -4856163 - AluY SINE Alu -15 296 1 340 251 170 45 chr9 113006830 113007000 -4855627 + MIR SINE MIR 12 218 -44 1947 164 3 19 chr9 113007000 113007136 -4855491 + AluJo SINE Alu 1 138 -174 2435 88 3 0 chr9 113007136 113007433 -4855194 + AluSp SINE Alu 1 298 -15 1947 164 3 19 chr9 113007433 113007606 -4855021 + AluJo SINE Alu 138 305 -7 340 251 170 45 chr9 113007606 113007658 -4854969 + MIR SINE MIR 218 262 0 720 150 16 8 chr9 113007847 113007974 -4854653 - FLAM_C SINE Alu -4 129 2 406 252 59 37 chr9 113008119 113008254 -4854373 + MIR SINE MIR 114 251 -11 2448 94 0 3 chr9 113008333 113008641 -4853986 + AluSc SINE Alu 1 307 -2 187 370 43 0 chr9 113010124 113010216 -4852411 + MIR SINE MIR 161 256 -6 2194 118 3 3 chr9 113010232 113010538 -4852089 - AluSx SINE Alu -6 306 1 369 130 20 2 chr9 113011039 113011114 -4851513 - MSTC LTR MaLR 0 428 365 2242 93 0 0 chr9 113011134 113011414 -4851213 - AluSx SINE Alu -32 280 1 615 108 0 49 chr9 113011414 113011516 -4851111 - MSTC LTR MaLR -331 97 1 354 23 0 0 chr9 113011698 113011741 -4850886 + (CA)n Simple_repeat Simple_repeat 2 44 0 1901 111 0 0 chr9 113011903 113012146 -4850481 + AluSx SINE Alu 1 243 -69 205 312 54 21 chr9 113012919 113013012 -4849615 + MIR3 SINE MIR 72 167 -41 182 136 23 0 chr9 113013593 113013637 -4848990 + (TTCA)n Simple_repeat Simple_repeat 2 46 0 191 265 0 0 chr9 113013637 113013686 -4848941 - L2 LINE L2 0 3313 3265 207 248 48 38 chr9 113013783 113013888 -4848739 - L2 LINE L2 -205 3067 2962 1902 207 118 24 chr9 113013889 113014401 -4848226 - MLT1E LTR MaLR 0 558 19 2417 123 67 12 chr9 113014401 113014807 -4847820 + MSTA LTR MaLR 1 428 0 1902 207 118 24 chr9 113014807 113014818 -4847809 - MLT1E LTR MaLR -539 19 10 252 86 0 0 chr9 113015590 113015625 -4847002 + (A)n Simple_repeat Simple_repeat 1 35 0 344 273 61 10 chr9 113016055 113016154 -4846473 - MIR3 SINE MIR -21 187 84 393 319 30 7 chr9 113016213 113016348 -4846279 + MIR SINE MIR 48 185 -77 2234 79 45 3 chr9 113016799 113017089 -4845538 + AluSq SINE Alu 1 302 -11 313 273 23 53 chr9 113017645 113017777 -4844850 + L2 LINE L2 3139 3266 -47 300 53 0 0 chr9 113017792 113017830 -4844797 + (TGAA)n Simple_repeat Simple_repeat 2 39 0 1007 126 0 0 chr9 113018976 113019111 -4843516 + AluJb SINE Alu 1 135 -177 1846 164 13 13 chr9 113019111 113019423 -4843204 + AluJo SINE Alu 1 312 0 2475 82 0 7 chr9 113020187 113020493 -4842134 - AluSc SINE Alu -5 304 1 850 254 23 5 chr9 113020571 113020791 -4841836 + MER58A DNA MER1_type 1 224 0 2037 108 7 4 chr9 113021046 113021324 -4841303 - AluSx SINE Alu -25 287 9 1301 102 0 0 chr9 113021340 113021506 -4841121 - AluSg/x SINE Alu -13 299 134 1615 142 22 73 chr9 113021506 113021685 -4840942 - AluJb SINE Alu -12 300 142 2318 107 0 3 chr9 113021685 113021985 -4840642 - AluSx SINE Alu -13 299 1 1615 142 22 73 chr9 113021985 113022121 -4840506 - AluJb SINE Alu -170 142 1 23 0 0 0 chr9 113022181 113022204 -4840423 + AT_rich Low_complexity Low_complexity 1 23 0 1504 210 141 67 chr9 113022983 113023480 -4839147 + L1MDb LINE L1 922 1381 -5159 2147 151 0 0 chr9 113023480 113023616 -4839011 + AluSx SINE Alu 1 136 -176 2384 88 0 3 chr9 113023616 113023912 -4838715 + AluY SINE Alu 1 295 -16 2147 151 0 0 chr9 113023912 113024087 -4838540 + AluSx SINE Alu 135 312 0 1504 210 141 67 chr9 113024087 113024362 -4838265 + L1MDb LINE L1 1381 1717 -4823 2362 107 0 3 chr9 113024362 113024671 -4837956 + AluSx SINE Alu 1 308 -4 1504 210 141 67 chr9 113024671 113024801 -4837826 + L1MDb LINE L1 1717 1836 -4704 1896 147 40 0 chr9 113024802 113025101 -4837526 + AluJo SINE Alu 1 311 -1 438 92 0 15 chr9 113025110 113025175 -4837452 + U6 snRNA snRNA 1 64 -43 259 186 67 3 chr9 113025193 113025270 -4837357 + L1MDb LINE L1 1831 1902 -4638 1568 137 5 5 chr9 113025276 113025495 -4837132 + AluJb SINE Alu 67 285 -27 186 133 0 0 chr9 113025497 113025527 -4837100 + (CATA)n Simple_repeat Simple_repeat 3 32 0 399 213 195 12 chr9 113025653 113025817 -4836810 + LTR33 LTR ERVL 25 218 -303 * 441 273 40 0 chr9 113025806 113025956 -4836671 + LTR33 LTR ERVL 366 521 0 195 280 46 113 chr9 113026451 113026690 -4835937 + L2 LINE L2 2963 3185 -87 696 240 39 25 chr9 113026711 113026915 -4835712 - MER63A DNA MER1_type 0 210 4 254 291 128 0 chr9 113026994 113027080 -4835547 - MIR SINE MIR -1 261 165 322 343 37 8 chr9 113027133 113027267 -4835360 + MLT1K LTR MaLR 77 214 -374 231 228 35 0 chr9 113027273 113027330 -4835297 - MIR SINE MIR -61 147 89 202 292 15 0 chr9 113027638 113027703 -4834924 + MIR SINE MIR 76 141 -67 603 331 60 33 chr9 113027743 113028109 -4834518 + MLT1K LTR MaLR 33 408 -180 820 200 27 5 chr9 113028457 113028642 -4833985 - MER5A DNA MER1_type 0 189 1 279 258 0 22 chr9 113028784 113028873 -4833754 + C-rich Low_complexity Low_complexity 3 89 0 1299 146 177 8 chr9 113030550 113030804 -4831823 - AluJb SINE Alu -15 297 1 211 197 0 42 chr9 113030880 113030951 -4831676 + C-rich Low_complexity Low_complexity 1 68 0 554 289 20 36 chr9 113031594 113031655 -4830972 + L1MC5 LINE L1 7659 7719 -242 1941 236 41 9 chr9 113031655 113032194 -4830433 - MER89 LTR ERV1 0 559 4 554 289 20 36 chr9 113032194 113032381 -4830246 + L1MC5 LINE L1 7719 7903 -58 200 181 14 125 chr9 113032602 113032674 -4829953 + L2 LINE L2 3205 3268 -4 2019 168 0 3 chr9 113033612 113033921 -4828706 - AluSx SINE Alu -4 308 1 350 140 0 0 chr9 113034209 113034266 -4828361 - FRAM/FAM SINE Alu -111 55 1 365 290 7 35 chr9 113036268 113036413 -4826214 - MER5A DNA MER1_type -26 163 23 2439 80 23 0 chr9 113036832 113037134 -4825493 + AluSc SINE Alu 1 309 0 2194 122 0 0 chr9 113037208 113037503 -4825124 + AluSx SINE Alu 1 295 -17 307 206 48 56 chr9 113037678 113037804 -4824823 + L1MC4 LINE L1 7918 8042 0 240 310 7 0 chr9 113037834 113037921 -4824706 + L1MC/D LINE L1 5593 5681 -440 2225 88 0 4 chr9 113040203 113040476 -4822151 + AluSx SINE Alu 15 286 -26 221 87 0 43 chr9 113040476 113040522 -4822105 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 2476 96 0 0 chr9 113042256 113042568 -4820059 + AluSx SINE Alu 1 312 0 1905 160 16 16 chr9 113043345 113043657 -4818970 + AluJb SINE Alu 1 312 0 773 206 50 0 chr9 113043759 113043919 -4818708 - FAM SINE Alu -7 168 1 1537 122 0 14 chr9 113043930 113044091 -4818536 - AluSg/x SINE Alu -18 292 133 2395 90 0 6 chr9 113044091 113044403 -4818224 - AluY SINE Alu -1 310 1 1537 122 0 14 chr9 113044403 113044454 -4818173 - AluSg/x SINE Alu -177 133 83 311 320 45 32 chr9 113044780 113044936 -4817691 - L1 LINE L1 -2954 3192 3035 270 0 0 0 chr9 113046181 113046211 -4816416 + (T)n Simple_repeat Simple_repeat 1 30 0 4863 197 51 70 chr9 113047411 113047513 -4815114 + Charlie1a DNA MER1_type 2 104 -2657 2078 147 0 7 chr9 113047513 113047820 -4814807 - AluJb SINE Alu -7 305 1 4863 197 51 70 chr9 113047820 113048635 -4813992 + Charlie1a DNA MER1_type 104 933 -1828 2018 123 17 20 chr9 113048635 113048935 -4813692 + AluSx SINE Alu 1 299 -13 4863 197 51 70 chr9 113048935 113049091 -4813536 + Charlie1a DNA MER1_type 933 1090 -1671 1640 175 27 3 chr9 113049091 113049383 -4813244 + AluJo SINE Alu 1 299 -13 4863 197 51 70 chr9 113049383 113049689 -4812938 + Charlie1a DNA MER1_type 1090 1357 -98 1934 170 0 0 chr9 113049726 113050032 -4812595 - AluJb SINE Alu -6 306 1 2266 84 0 0 chr9 113050075 113050349 -4812278 + AluSp SINE Alu 29 302 -11 2190 125 0 10 chr9 113051269 113051573 -4811054 - AluJb SINE Alu -11 301 1 518 284 79 28 chr9 113054524 113054739 -4807888 + MIR SINE MIR 34 259 -3 1731 215 147 19 chr9 113055404 113055921 -4806706 - MER119 DNA MER1_type 0 583 1 825 162 67 39 chr9 113056351 113056530 -4806097 + MER20 DNA MER1_type 5 188 -31 456 250 0 0 chr9 113058196 113058280 -4804347 + 7SLRNA srpRNA srpRNA 1 84 -236 746 290 83 34 chr9 113058308 113058611 -4804016 - MLT1L LTR MaLR -28 587 260 2280 108 0 7 chr9 113058611 113058917 -4803710 + AluSc SINE Alu 1 304 -5 746 290 83 34 chr9 113058917 113058999 -4803628 - MLT1L LTR MaLR -355 260 183 519 275 167 4 chr9 113059896 113060136 -4802491 - L1ME LINE L1 -333 5788 5510 180 0 0 0 chr9 113060205 113060225 -4802402 + (T)n Simple_repeat Simple_repeat 1 20 0 180 0 0 0 chr9 113061218 113061238 -4801389 + (CAG)n Simple_repeat Simple_repeat 3 22 0 198 0 0 0 chr9 113063122 113063144 -4799483 + (T)n Simple_repeat Simple_repeat 1 22 0 2314 103 0 10 chr9 113067161 113067472 -4795155 - AluSx SINE Alu 0 312 5 2240 97 3 29 chr9 113068123 113068431 -4794196 + AluSx SINE Alu 1 300 -12 2415 67 0 10 chr9 113068768 113069065 -4793562 + AluY SINE Alu 1 294 -17 203 257 146 72 chr9 113069607 113069772 -4792855 - MER5B DNA MER1_type -1 188 1 435 38 0 0 chr9 113070653 113070706 -4791921 + (TGGA)n Simple_repeat Simple_repeat 4 56 0 2221 112 0 7 chr9 113070728 113071024 -4791603 + AluSx SINE Alu 1 294 -18 201 147 0 0 chr9 113071037 113071071 -4791556 + (TGGA)n Simple_repeat Simple_repeat 4 37 0 273 216 21 140 chr9 113071082 113071256 -4791371 - MIR SINE MIR -32 230 73 2194 125 3 0 chr9 113072306 113072610 -4790017 - AluSx SINE Alu -7 305 1 2536 84 3 0 chr9 113072699 113073008 -4789619 - AluSg SINE Alu 0 310 1 434 318 15 8 chr9 113073436 113073568 -4789059 - MIR SINE MIR -124 138 6 190 181 56 83 chr9 113073640 113073712 -4788915 + MIR3 SINE MIR 87 156 -52 372 234 0 0 chr9 113074246 113074340 -4788287 + (CA)n Simple_repeat Simple_repeat 2 95 0 330 331 95 0 chr9 113074843 113075012 -4787615 - MIR3 SINE MIR -18 190 6 615 165 16 8 chr9 113075259 113075380 -4787247 + AluJb SINE Alu 180 301 -11 441 169 36 0 chr9 113075924 113076007 -4786620 - MER96B DNA MER1_type? 0 417 332 1132 157 0 0 chr9 113076008 113076174 -4786453 + AluJb SINE Alu 130 295 -17 * 1183 186 0 0 chr9 113076173 113076356 -4786271 - AluSx SINE Alu -129 183 1 988 200 0 0 chr9 113076365 113076535 -4786092 - AluJb SINE Alu -23 289 120 976 94 0 0 chr9 113076555 113076683 -4785944 - FLAM_C SINE Alu -1 142 15 946 219 26 48 chr9 113076687 113076717 -4785910 - MER96B DNA MER1_type? -151 266 237 2564 53 0 7 chr9 113076717 113077018 -4785609 + AluY SINE Alu 1 299 -12 946 219 26 48 chr9 113077018 113077257 -4785370 - MER96B DNA MER1_type? -180 237 3 418 290 42 26 chr9 113077921 113078114 -4784513 + MIR3 SINE MIR 3 198 -10 257 182 36 0 chr9 113078119 113078174 -4784453 - MIR SINE MIR -71 137 81 353 228 38 0 chr9 113078197 113078276 -4784351 + MIR SINE MIR 118 199 -63 342 282 238 6 chr9 113078280 113078461 -4784166 - MIR SINE MIR 0 262 40 188 171 0 0 chr9 113079178 113079213 -4783414 - MIR SINE MIR -119 143 109 266 338 54 7 chr9 113079896 113080044 -4782583 + MIR3 SINE MIR 35 189 -19 1654 155 0 26 chr9 113080762 113081026 -4781601 - AluJo SINE Alu -17 295 39 813 242 29 51 chr9 113081104 113081377 -4781250 - L1MD2 LINE L1 -10 6349 6083 217 260 229 0 chr9 113081627 113081723 -4780904 - MIR SINE MIR -71 137 20 194 186 0 129 chr9 113081996 113082066 -4780561 - L2 LINE L2 -11 3261 3201 334 231 96 26 chr9 113082218 113082374 -4780253 - L2 LINE L2 -255 3017 2851 257 215 0 13 chr9 113082745 113082824 -4779803 + CT-rich Low_complexity Low_complexity 2 79 0 279 148 0 89 chr9 113084233 113084334 -4778293 + (TAAAG)n Simple_repeat Simple_repeat 3 94 0 226 328 37 30 chr9 113134775 113134909 -4727718 - L2 LINE L2 -218 3054 2920 813 195 59 0 chr9 113134919 113135088 -4727539 + AluJo SINE Alu 42 220 -92 234 191 0 0 chr9 113135089 113135136 -4727491 + Alu SINE Alu 86 132 -1 1810 153 29 16 chr9 113135142 113135415 -4727212 + AluJb SINE Alu 1 280 -32 198 0 0 0 chr9 113135415 113135437 -4727190 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 1810 153 29 16 chr9 113135437 113135471 -4727156 + AluJb SINE Alu 280 312 0 231 226 167 10 chr9 113135471 113135573 -4727054 - MIR3 SINE MIR -80 128 11 1410 137 0 119 chr9 113135669 113136012 -4726615 - AluSc SINE Alu -7 302 1 2209 86 10 10 chr9 113136014 113136318 -4726309 - AluY SINE Alu -7 304 1 1729 182 0 14 chr9 113136394 113136691 -4725936 - AluJb SINE Alu -19 293 1 2364 90 0 0 chr9 113136712 113137013 -4725614 + AluSq SINE Alu 1 301 -12 271 247 182 29 chr9 113137609 113137779 -4724848 + L2 LINE L2 2864 3059 -254 1841 171 3 16 chr9 113138174 113138490 -4724137 - AluJo SINE Alu 0 312 1 2073 128 0 10 chr9 113138597 113138901 -4723726 + AluSx SINE Alu 1 301 -11 359 370 0 0 chr9 113138967 113139075 -4723552 - L2 LINE L2 -17 3296 3189 185 380 98 0 chr9 113139221 113139313 -4723314 + MIR SINE MIR 111 211 -51 204 365 124 8 chr9 113139842 113140083 -4722544 - L2 LINE L2 -2113 1201 933 221 336 65 19 chr9 113140251 113140358 -4722269 - MIR SINE MIR -8 254 143 1298 109 0 0 chr9 113140359 113140534 -4722093 - AluSg/x SINE Alu 0 312 138 668 191 0 20 chr9 113140873 113141020 -4721607 + AluSp/q SINE Alu 169 312 -1 257 303 53 15 chr9 113142407 113142539 -4720088 + MIR SINE MIR 48 184 -78 198 275 283 17 chr9 113142576 113142696 -4719931 - MIR SINE MIR -10 252 101 541 250 77 43 chr9 113143440 113143648 -4718979 + MIR SINE MIR 46 260 -2 285 275 155 7 chr9 113143683 113143825 -4718802 - MIR SINE MIR -19 243 81 360 219 62 39 chr9 113144292 113144420 -4718207 - MIR SINE MIR -117 145 15 2346 83 0 0 chr9 113144463 113144763 -4717864 + AluSg SINE Alu 1 300 -10 713 182 0 8 chr9 113144840 113144961 -4717666 - AluJo SINE Alu -111 201 82 611 237 129 42 chr9 113144961 113145095 -4717532 + MLT2C1 LTR ERVL 81 202 -195 1866 141 3 17 chr9 113145095 113145394 -4717233 + AluJo SINE Alu 11 305 -7 611 237 129 42 chr9 113145394 113145546 -4717081 + MLT2C1 LTR ERVL 202 392 -5 270 330 87 9 chr9 113145551 113145666 -4716961 + MIR SINE MIR 124 247 -15 492 289 28 0 chr9 113145767 113145909 -4716718 + MIR SINE MIR 28 173 -89 2263 85 0 0 chr9 113145948 113146241 -4716386 + AluSc SINE Alu 1 293 -16 1746 178 3 19 chr9 113146670 113146985 -4715642 - AluJb SINE Alu -2 310 1 1635 178 17 0 chr9 113147060 113147352 -4715275 - L1MB3 LINE L1 -1 6182 5886 2017 139 0 13 chr9 113147359 113147662 -4714965 - AluSx SINE Alu -13 299 1 1552 157 29 21 chr9 113147918 113148198 -4714429 + AluJo SINE Alu 1 282 -30 26 0 0 0 chr9 113148383 113148409 -4714218 + AT_rich Low_complexity Low_complexity 1 26 0 1561 147 55 15 chr9 113148409 113148683 -4713944 + AluSx SINE Alu 1 316 0 280 0 0 0 chr9 113148683 113148714 -4713913 + (TAA)n Simple_repeat Simple_repeat 3 180 0 206 250 31 0 chr9 113149561 113149625 -4713002 - L2 LINE L2 -323 2990 2925 1924 132 24 0 chr9 113150167 113150455 -4712172 - AluSp SINE Alu -18 295 1 221 122 49 0 chr9 113153093 113153134 -4709493 + (TCTCTG)n Simple_repeat Simple_repeat 4 46 0 717 151 0 0 chr9 113153172 113153278 -4709349 + FLAM_C SINE Alu 1 106 -37 427 302 87 13 chr9 113153634 113153783 -4708844 - MIR SINE MIR -95 167 8 294 310 129 26 chr9 113154034 113154150 -4708477 - MIR SINE MIR -122 140 13 360 357 55 43 chr9 113154792 113155027 -4707600 + MIR SINE MIR 13 250 -12 198 270 122 0 chr9 113155046 113155120 -4707507 - MER5C DNA MER1_type -17 307 225 232 283 101 0 chr9 113155129 113155228 -4707399 - MER5C DNA MER1_type -200 124 16 252 286 198 35 chr9 113155274 113155501 -4707126 - L2 LINE L2 -19 3294 3031 2048 111 0 36 chr9 113155547 113155688 -4706939 + AluSx SINE Alu 1 146 -166 1376 272 12 88 chr9 113155688 113156008 -4706619 + AluSx SINE Alu 4 299 -13 2048 111 0 36 chr9 113156008 113156172 -4706455 + AluSx SINE Alu 146 295 -17 2198 96 7 0 chr9 113156172 113156464 -4706163 + AluSx SINE Alu 1 294 -18 347 269 115 10 chr9 113156514 113156618 -4706009 + L2 LINE L2 3156 3270 -2 202 292 31 0 chr9 113157762 113157827 -4704800 - MIR SINE MIR -83 179 113 2039 114 38 0 chr9 113157865 113158155 -4704472 - AluSx SINE Alu -11 301 1 210 316 20 31 chr9 113158830 113158928 -4703699 + MIR3 SINE MIR 83 179 -29 207 0 0 0 chr9 113159337 113159360 -4703267 + (GGGTG)n Simple_repeat Simple_repeat 4 26 0 374 279 91 1 chr9 113160241 113160373 -4702254 - MIR SINE MIR -58 150 34 226 315 45 0 chr9 113160736 113160825 -4701802 - MIR SINE MIR -141 121 29 297 269 92 8 chr9 113161013 113161132 -4701495 - MIR3 SINE MIR -71 137 9 347 283 113 0 chr9 113162165 113162271 -4700356 + MIR SINE MIR 67 184 -78 223 329 14 0 chr9 113162403 113162476 -4700151 - MIR3 SINE MIR -132 76 3 1486 128 72 11 chr9 113162696 113163049 -4699578 + AluJb SINE Alu 2 370 0 1615 214 97 23 chr9 113164002 113164433 -4698194 + MLT1C LTR MaLR 1 463 -4 356 368 7 21 chr9 113164921 113165065 -4697562 + MIR SINE MIR 67 208 -54 306 292 0 22 chr9 113165105 113165194 -4697433 + MLT1B LTR MaLR 245 331 -59 266 257 54 0 chr9 113165240 113165314 -4697313 + MIR3 SINE MIR 77 154 -54 450 211 0 0 chr9 113165496 113165676 -4696951 + (CA)n Simple_repeat Simple_repeat 1 180 0 273 187 0 75 chr9 113165689 113165796 -4696831 + (CAGAGA)n Simple_repeat Simple_repeat 2 100 0 773 144 45 0 chr9 113165796 113165928 -4696699 + BC200 scRNA scRNA 1 138 -62 186 227 0 0 chr9 113165939 113166014 -4696613 + (CA)n Simple_repeat Simple_repeat 2 76 0 1081 250 128 23 chr9 113166268 113166825 -4695802 + L1MC5 LINE L1 7303 7917 -44 2288 97 0 7 chr9 113166846 113167146 -4695481 + AluSx SINE Alu 1 298 -14 742 266 79 0 chr9 113167946 113168175 -4694452 + Charlie8 DNA MER1_type 4 250 -2167 312 224 178 9 chr9 113170260 113170367 -4692260 + MIR SINE MIR 32 156 -106 2137 105 6 40 chr9 113171406 113171584 -4691043 - AluSx SINE Alu 0 312 148 2151 108 3 0 chr9 113171584 113171872 -4690755 - AluSg SINE Alu -21 289 1 2137 105 6 40 chr9 113171872 113172016 -4690611 - AluSx SINE Alu -164 148 1 290 245 19 66 chr9 113172303 113172409 -4690218 - MIR3 SINE MIR -26 182 82 285 250 15 0 chr9 113173399 113173467 -4689160 + MIR SINE MIR 81 149 -113 209 300 0 0 chr9 113173584 113173634 -4688993 + L2 LINE L2 3213 3262 -10 353 314 59 102 chr9 113173988 113174477 -4688150 - L1MCa LINE L1 -2770 3656 1295 2088 127 0 0 chr9 113175755 113176055 -4686572 + AluY SINE Alu 1 300 -11 327 283 29 43 chr9 113176071 113176209 -4686418 + L1M4c LINE L1 294 429 -6217 * 2668 210 117 10 chr9 113176204 113177189 -4685438 + L1M4c LINE L1 797 1859 -4787 845 168 0 0 chr9 113177189 113177326 -4685301 + AluSq/x SINE Alu 1 137 -176 703 61 0 0 chr9 113177426 113177525 -4685102 - LTR13 LTR ERVK -908 99 1 403 264 16 25 chr9 113177876 113177997 -4684630 + MLT1C LTR MaLR 348 467 0 2145 127 0 0 chr9 113178055 113178362 -4684265 - AluSg SINE Alu -3 307 1 1394 190 38 16 chr9 113178586 113178930 -4683697 + MLT1A1 LTR MaLR 25 364 -1 355 328 52 23 chr9 113178944 113179118 -4683509 - L2 LINE L2 -3 3269 3091 1998 103 0 43 chr9 113179689 113179989 -4682638 + AluSx SINE Alu 5 291 -21 22 0 0 0 chr9 113180566 113180588 -4682039 + AT_rich Low_complexity Low_complexity 1 22 0 1142 264 40 72 chr9 113180596 113180783 -4681844 + MER69 DNA AcHobo 1 192 -2334 2184 115 0 6 chr9 113180783 113181097 -4681530 - AluSx SINE Alu 0 312 1 1142 264 40 72 chr9 113181097 113181383 -4681244 + MER69 DNA AcHobo 192 459 -2067 351 72 17 43 chr9 113181448 113181502 -4681125 + L1M4 LINE L1 5544 5590 -593 2050 115 24 0 chr9 113181502 113181797 -4680830 - AluSx SINE Alu -9 303 2 351 72 17 43 chr9 113181797 113181823 -4680804 + L1M4 LINE L1 5590 5615 -568 832 118 25 0 chr9 113181824 113181943 -4680684 + FLAM_C SINE Alu 1 122 -21 2276 86 3 0 chr9 113181968 113182259 -4680368 + AluSx SINE Alu 8 299 -13 3605 90 6 53 chr9 113182300 113182470 -4680157 - Tigger1 DNA MER2_type -1087 1331 1155 1657 146 44 10 chr9 113182470 113182764 -4679863 - AluJb SINE Alu -8 304 1 3605 90 6 53 chr9 113182764 113183073 -4679554 - Tigger1 DNA MER2_type -1263 1155 885 2263 91 3 0 chr9 113183073 113183371 -4679256 - AluSp SINE Alu -14 299 1 3605 90 6 53 chr9 113183371 113183514 -4679113 - Tigger1 DNA MER2_type -1533 885 737 266 338 76 41 chr9 113184022 113184167 -4678460 + MIR SINE MIR 43 192 -70 2098 113 3 3 chr9 113187657 113187950 -4674677 + AluSx SINE Alu 6 298 -14 326 273 0 0 chr9 113188057 113188134 -4674493 - MIR SINE MIR -58 150 74 192 100 33 0 chr9 113189421 113189451 -4673176 + L2 LINE L2 3183 3213 -100 180 111 0 0 chr9 113189872 113189899 -4672728 + (CCCCAG)n Simple_repeat Simple_repeat 3 29 0 420 243 14 56 chr9 113190075 113190219 -4672408 + L2 LINE L2 3176 3313 0 291 361 36 24 chr9 113190424 113190590 -4672037 - MIR SINE MIR -35 227 60 820 139 0 56 chr9 113190978 113191122 -4671505 + AluJb SINE Alu 1 136 -176 1728 166 49 0 chr9 113191134 113191418 -4671209 + AluJo SINE Alu 1 298 -14 230 221 3 81 chr9 113191505 113191613 -4671014 - MIR SINE MIR -28 180 80 1976 123 42 0 chr9 113191631 113191915 -4670712 - AluSx SINE Alu -16 296 1 309 280 24 64 chr9 113192798 113192923 -4669704 - MIR SINE MIR -109 153 34 2579 218 123 58 chr9 113194101 113194740 -4667887 + L1M4c LINE L1 1628 2224 -4158 1880 155 6 22 chr9 113194740 113195057 -4667570 + AluJb SINE Alu 1 312 0 2579 218 123 58 chr9 113195057 113195112 -4667515 + L1M4c LINE L1 2224 2274 -4108 1643 140 89 0 chr9 113195112 113195383 -4667244 - AluSq SINE Alu -18 295 1 2579 218 123 58 chr9 113195383 113195395 -4667232 + L1M4c LINE L1 2274 2284 -4098 2029 140 0 13 chr9 113195395 113195695 -4666932 - AluSx SINE Alu -16 296 1 2579 218 123 58 chr9 113195695 113196175 -4666452 + L1M4c LINE L1 2284 2731 -3651 2193 106 3 0 chr9 113196175 113196467 -4666160 - AluSq SINE Alu -19 294 2 2579 218 123 58 chr9 113196467 113196599 -4666028 + L1M4c LINE L1 2731 2853 -3529 564 152 50 10 chr9 113196599 113196698 -4665929 - U13 snRNA snRNA -1 103 1 2579 218 123 58 chr9 113196698 113196725 -4665902 + L1M4c LINE L1 2853 2877 -3505 2022 114 0 11 chr9 113196725 113197005 -4665622 - AluSg SINE Alu -31 279 3 2579 218 123 58 chr9 113197005 113197473 -4665154 + L1M4c LINE L1 2877 3585 -2797 1092 178 37 8 chr9 113197508 113197539 -4665088 + L1MB4 LINE L1 5788 5817 -363 2167 113 3 7 chr9 113197539 113197839 -4664788 + AluSq SINE Alu 1 299 -14 1092 178 37 8 chr9 113197839 113198151 -4664476 + L1MB4 LINE L1 5817 6180 0 602 103 41 0 chr9 113199546 113199643 -4662984 - MSTC LTR MaLR -11 417 317 888 157 52 179 chr9 113199643 113199755 -4662872 - MER51C LTR ERV1 0 640 515 1859 101 87 7 chr9 113199755 113200042 -4662585 + AluSq SINE Alu 1 310 -3 888 157 52 179 chr9 113200042 113200291 -4662336 - MER51C LTR ERV1 -125 515 329 1667 135 51 26 chr9 113200495 113200807 -4661820 - MSTC LTR MaLR -108 320 1 379 272 94 78 chr9 113201535 113201715 -4660912 + MIR SINE MIR 14 196 -66 286 339 32 2 chr9 113203144 113203266 -4659361 - MIR SINE MIR -28 180 55 1859 142 3 3 chr9 113203974 113204300 -4658327 - AluSx SINE Alu 0 326 1 554 236 24 12 chr9 113205434 113205599 -4657028 - MER20 DNA MER1_type -21 198 32 929 189 11 37 chr9 113206517 113206601 -4656026 + MER53 DNA DNA 1 86 -103 2257 110 0 0 chr9 113206601 113206910 -4655717 - AluSx SINE Alu -3 309 1 929 189 11 37 chr9 113206910 113207015 -4655612 + MER53 DNA DNA 86 185 -4 199 219 12 12 chr9 113208572 113208654 -4653973 + GA-rich Low_complexity Low_complexity 2 83 0 739 161 68 21 chr9 113208661 113208853 -4653774 - L1MC1 LINE L1 0 6333 6133 2007 129 10 0 chr9 113208856 113209151 -4653476 - AluJo SINE Alu -14 298 1 940 154 41 55 chr9 113209153 113209373 -4653254 + LTR29 LTR ERV1 406 622 0 312 209 1 0 chr9 113209373 113209450 -4653177 - L1MC2 LINE L1 -276 6061 5980 863 166 73 29 chr9 113209450 113209655 -4652972 - LTR9 LTR ERV1 0 612 399 1826 209 5 40 chr9 113209699 113210121 -4652506 + HERV3 LTR ERV1 2070 2476 -5950 739 169 0 0 chr9 113210113 113210237 -4652390 + HERV3 LTR ERV1 3701 3824 -4602 * 15963 198 26 14 chr9 113210227 113213470 -4649157 + HERV3 LTR ERV1 5148 8426 0 3104 65 69 2 chr9 113213486 113213951 -4648676 + LTR61 LTR ERV1 100 595 0 2100 163 69 48 chr9 113213951 113214069 -4648558 - L1MC2 LINE L1 -518 5815 5701 4047 153 102 60 chr9 113214069 113214432 -4648195 - MER4D LTR ERV1 0 903 557 2240 109 3 3 chr9 113214432 113214745 -4647882 - AluSp SINE Alu 0 313 1 4047 153 102 60 chr9 113214745 113215248 -4647379 - MER4D LTR ERV1 -346 557 1 2100 163 69 48 chr9 113215248 113215546 -4647081 - L1MC2 LINE L1 -632 5701 5377 619 219 0 8 chr9 113215546 113215665 -4646962 - FLAM_C SINE Alu -15 118 1 2100 163 69 48 chr9 113215665 113215913 -4646714 - L1MC2 LINE L1 -956 5377 5136 199 325 48 0 chr9 113215946 113216029 -4646598 + MIR SINE MIR 51 137 -125 1880 148 0 10 chr9 113216179 113216477 -4646150 + AluSq SINE Alu 6 300 -13 36 40 0 0 chr9 113216665 113216715 -4645912 + AT_rich Low_complexity Low_complexity 1 50 0 2294 60 3 13 chr9 113216761 113217062 -4645565 - AluY SINE Alu -13 298 1 629 306 55 59 chr9 113217072 113217237 -4645390 + L1MC4a LINE L1 6414 6578 -1230 1853 130 42 3 chr9 113217237 113217522 -4645105 - AluSx SINE Alu -16 296 1 629 306 55 59 chr9 113217522 113217862 -4644765 + L1MC4a LINE L1 6578 6917 -891 21 89 0 0 chr9 113218235 113218291 -4644336 + GC_rich Low_complexity Low_complexity 1 56 0 274 349 29 1 chr9 113218924 113219038 -4643589 - MIR SINE MIR -38 170 55 1892 153 0 0 chr9 113219745 113220065 -4642562 - AluSx SINE Alu 0 320 1 670 203 25 6 chr9 113221189 113221352 -4641275 - MER20 DNA MER1_type -21 198 33 195 42 0 0 chr9 113221894 113221918 -4640709 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 1887 139 10 10 chr9 113222081 113222376 -4640251 + AluSc SINE Alu 1 295 -14 1536 185 0 33 chr9 113223723 113223881 -4638746 - AluJo SINE Alu -20 292 147 2271 99 3 0 chr9 113223881 113224185 -4638442 - AluSp SINE Alu -8 305 1 1536 185 0 33 chr9 113224185 113224328 -4638299 - AluJo SINE Alu -165 147 1 938 184 11 37 chr9 113227053 113227137 -4635490 + MER53 DNA DNA 1 86 -103 2295 104 0 0 chr9 113227137 113227446 -4635181 - AluSx SINE Alu -3 309 1 938 184 11 37 chr9 113227446 113227551 -4635076 + MER53 DNA DNA 86 185 -4 248 318 24 0 chr9 113229016 113229101 -4633526 + G-rich Low_complexity Low_complexity 1 87 0 982 145 52 12 chr9 113229123 113229295 -4633332 - L1MC1 LINE L1 -18 6315 6137 2083 130 13 0 chr9 113229298 113229598 -4633029 - AluJo SINE Alu -8 304 1 882 267 58 63 chr9 113229632 113230251 -4632376 + L1MC5 LINE L1 6611 7226 -735 1693 149 56 23 chr9 113230267 113230569 -4632058 + AluJb SINE Alu 1 312 0 317 226 146 7 chr9 113230699 113230836 -4631791 + L1MC5 LINE L1 7311 7466 -495 204 111 0 0 chr9 113231130 113231166 -4631461 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 297 89 0 0 chr9 113231828 113231873 -4630754 + (TCC)n Simple_repeat Simple_repeat 1 45 0 543 305 48 27 chr9 113235989 113236150 -4626477 + MIR SINE MIR 5 166 -96 1888 163 3 0 chr9 113236150 113236445 -4626182 - AluJb SINE Alu -16 296 1 543 305 48 27 chr9 113236445 113236527 -4626100 + MIR SINE MIR 166 245 -17 2019 111 0 24 chr9 113236608 113236930 -4625697 + AluSx SINE Alu 1 315 0 203 328 23 30 chr9 113237328 113237459 -4625168 + G-rich Low_complexity Low_complexity 2 131 0 234 361 45 30 chr9 113237853 113237986 -4624641 - L2 LINE L2 0 3272 3138 328 325 121 6 chr9 113239443 113239600 -4623027 - MIR SINE MIR -57 205 31 975 184 73 8 chr9 113239740 113239974 -4622653 + L1MC1 LINE L1 6084 6332 -1 312 281 44 18 chr9 113240076 113240190 -4622437 - L1MC5 LINE L1 -36 7925 7809 1292 81 0 49 chr9 113241065 113241228 -4621399 - AluSp SINE Alu -17 296 141 2221 82 10 10 chr9 113241228 113241532 -4621095 - AluY SINE Alu -7 304 1 1292 81 0 49 chr9 113241532 113241553 -4621074 - AluSp SINE Alu -172 141 121 1729 182 0 14 chr9 113241608 113241905 -4620722 - AluJb SINE Alu -19 293 1 2364 90 0 0 chr9 113241926 113242227 -4620400 + AluSq SINE Alu 1 301 -12 271 247 182 29 chr9 113242823 113242993 -4619634 + L2 LINE L2 2864 3059 -254 1824 174 3 16 chr9 113243388 113243704 -4618923 - AluJo SINE Alu 0 312 1 2073 128 0 10 chr9 113243811 113244115 -4618512 + AluSx SINE Alu 1 301 -11 359 370 0 0 chr9 113244181 113244289 -4618338 - L2 LINE L2 -17 3296 3189 185 380 98 0 chr9 113244435 113244527 -4618100 + MIR SINE MIR 111 211 -51 204 365 124 8 chr9 113245056 113245297 -4617330 - L2 LINE L2 -2113 1201 933 221 336 65 19 chr9 113245465 113245572 -4617055 - MIR SINE MIR -8 254 143 1301 109 0 0 chr9 113245574 113245749 -4616878 - AluSg/x SINE Alu 0 312 138 235 136 0 0 chr9 113246291 113246335 -4616292 + MADE1 DNA Mariner 36 79 -1 339 125 0 18 chr9 113246388 113246444 -4616183 - MER5A DNA MER1_type -120 69 15 293 330 175 16 chr9 113246749 113246943 -4615684 - MIR SINE MIR -22 240 16 405 277 54 49 chr9 113247182 113247406 -4615221 + MER102b DNA MER1_type 117 341 0 8215 61 11 1 chr9 113247974 113248971 -4613656 - LTR13 LTR ERVK 0 1007 1 212 304 120 0 chr9 113249213 113249305 -4613322 + MIR SINE MIR 148 250 -12 181 333 14 0 chr9 113249419 113249491 -4613136 + L2 LINE L2 3240 3312 -1 341 248 195 7 chr9 113249808 113249957 -4612670 + MIR SINE MIR 13 189 -73 1798 168 3 3 chr9 113250063 113250354 -4612273 + AluJo SINE Alu 19 309 -3 212 276 59 126 chr9 113250355 113250594 -4612033 - L2 LINE L2 -68 3245 3023 278 330 68 0 chr9 113250667 113250785 -4611842 + MIR SINE MIR 122 247 -15 187 261 0 92 chr9 113250824 113250889 -4611738 + MIR SINE MIR 90 148 -114 2482 62 0 20 chr9 113250992 113251298 -4611329 + AluSx SINE Alu 1 300 -12 827 189 97 67 chr9 113251521 113251860 -4610767 + LTR10B LTR ERV1 11 434 -71 267 136 0 0 chr9 113251865 113251909 -4610718 - LTR10B LTR ERV1 -68 479 436 25860 213 12 19 chr9 113251910 113257206 -4605421 + HERVI LTR ERV1 2524 7784 -1 844 220 0 56 chr9 113257215 113257520 -4605107 + LTR10B LTR ERV1 7 368 -137 676 89 0 0 chr9 113257522 113257612 -4605015 + AluSq SINE Alu 2 91 -221 2443 145 135 8 chr9 113257686 113258169 -4604458 + LTR10A LTR ERV1 4 547 -62 1611 81 4 25 chr9 113258180 113258415 -4604212 + AluSq SINE Alu 84 313 0 727 102 41 75 chr9 113258416 113258563 -4604064 + LTR10B LTR ERV1 406 547 0 2297 82 7 0 chr9 113259761 113260052 -4602575 - AluSx SINE Alu -19 293 1 454 278 69 0 chr9 113260055 113260199 -4602428 - L2 LINE L2 -568 2746 2593 1662 132 4 16 chr9 113260234 113260492 -4602135 + AluJo SINE Alu 1 255 -57 1443 105 5 34 chr9 113260549 113260758 -4601869 - AluJo SINE Alu -19 293 91 2365 109 0 0 chr9 113260764 113261068 -4601559 - AluSc SINE Alu -5 304 1 363 170 128 0 chr9 113261699 113261793 -4600834 - MER53 DNA DNA -83 106 1 598 326 13 66 chr9 113261999 113262303 -4600324 + L2 LINE L2 2985 3272 0 2445 104 0 0 chr9 113262599 113262908 -4599719 + AluSx SINE Alu 1 309 -3 1289 214 121 17 chr9 113263010 113263365 -4599262 + MSTD LTR MaLR 1 392 -4 7333 75 21 1 chr9 113263583 113264570 -4598057 - LTR13 LTR ERVK 0 1007 1 417 271 8 25 chr9 113264921 113265043 -4597584 + MLT1C LTR MaLR 348 467 0 2252 117 3 3 chr9 113265101 113265409 -4597218 - AluSg SINE Alu -2 308 1 1477 190 42 12 chr9 113265646 113265977 -4596650 + MLT1A1 LTR MaLR 24 364 -1 307 324 53 24 chr9 113265995 113266165 -4596462 - L2 LINE L2 -7 3265 3091 2089 99 0 49 chr9 113266733 113267037 -4595590 + AluSx SINE Alu 3 291 -21 22 0 0 0 chr9 113267614 113267636 -4594991 + AT_rich Low_complexity Low_complexity 1 22 0 1204 259 36 83 chr9 113267644 113267842 -4594785 + MER69 DNA AcHobo 1 207 -1019 2331 108 0 6 chr9 113267842 113268156 -4594471 - AluSx SINE Alu 0 312 1 1204 259 36 83 chr9 113268156 113268510 -4594117 + MER69 DNA AcHobo 207 599 -627 315 62 42 0 chr9 113268510 113268558 -4594069 + L1M4 LINE L1 5547 5596 -578 401 0 0 20 chr9 113268558 113268608 -4594019 + (TTA)n Simple_repeat Simple_repeat 2 50 0 2148 115 24 0 chr9 113270363 113270658 -4591969 - AluSx SINE Alu -9 303 2 808 118 25 0 chr9 113270685 113270804 -4591823 + FLAM_C SINE Alu 1 122 -11 2401 83 3 0 chr9 113270829 113271119 -4591508 + AluSx SINE Alu 8 298 -14 230 118 0 0 chr9 113271125 113271159 -4591468 + L1MB3 LINE L1 6072 6105 -78 7782 122 23 45 chr9 113271160 113271330 -4591297 - Tigger1 DNA MER2_type -1087 1331 1159 1708 150 44 10 chr9 113271330 113271624 -4591003 - AluJb SINE Alu -8 304 1 7782 122 23 45 chr9 113271624 113271933 -4590694 - Tigger1 DNA MER2_type -1259 1159 845 2377 91 3 0 chr9 113271933 113272231 -4590396 - AluSp SINE Alu -14 299 1 7782 122 23 45 chr9 113272231 113273063 -4589564 - Tigger1 DNA MER2_type -1573 845 49 1900 106 110 7 chr9 113273063 113273336 -4589291 + AluSg SINE Alu 1 301 -9 7782 122 23 45 chr9 113273336 113273384 -4589243 - Tigger1 DNA MER2_type -2369 49 1 436 299 35 77 chr9 113273413 113273814 -4588813 - L1M4 LINE L1 -2433 3713 3330 927 225 88 72 chr9 113273823 113273882 -4588745 - L1ME3 LINE L1 -7 6224 6167 2338 116 0 0 chr9 113273882 113274183 -4588444 - AluSx SINE Alu -11 301 1 927 225 88 72 chr9 113274183 113274510 -4588117 - L1ME3 LINE L1 -64 6167 5832 914 214 39 29 chr9 113274510 113274716 -4587911 - MLT1A2 LTR MaLR 0 374 167 442 167 11 11 chr9 113274722 113274838 -4587789 - AluSg/x SINE Alu 0 309 201 773 169 20 14 chr9 113274839 113274987 -4587640 - MLT1A2 LTR MaLR -216 149 1 1611 266 80 33 chr9 113275017 113275569 -4587058 + MLT1G1 LTR MaLR 1 578 -17 1558 217 32 88 chr9 113275589 113275980 -4586647 - L1ME3 LINE L1 -427 5806 5395 1581 184 0 11 chr9 113275980 113276247 -4586380 - AluJb SINE Alu -14 298 35 2313 111 0 0 chr9 113276248 113276546 -4586081 - AluSx SINE Alu -14 298 1 1558 217 32 88 chr9 113276546 113276896 -4585731 - L1ME3 LINE L1 -837 5396 5088 2058 141 0 22 chr9 113277016 113277342 -4585285 - AluSx SINE Alu 0 319 1 1050 178 0 0 chr9 113277368 113277531 -4585096 - AluJb SINE Alu -10 302 140 2380 93 0 0 chr9 113277534 113277823 -4584804 - AluSg SINE Alu -17 293 5 767 232 20 5 chr9 113277823 113278021 -4584606 - L1ME3 LINE L1 -3256 2959 2759 1009 244 113 31 chr9 113278058 113278374 -4584253 - L1ME3 LINE L1 -3540 2675 2386 2207 124 20 0 chr9 113278374 113278680 -4583947 - AluSx SINE Alu 0 312 1 1009 244 113 31 chr9 113278680 113279110 -4583517 - L1ME3 LINE L1 -3829 2386 1903 1863 135 31 53 chr9 113279114 113279432 -4583195 - AluJb SINE Alu 0 312 2 607 226 54 19 chr9 113279443 113279627 -4583000 - L1MB8 LINE L1 -1 6177 5981 296 271 159 13 chr9 113280211 113280362 -4582265 - L1MC4a LINE L1 -1648 6160 5988 207 0 0 0 chr9 113280393 113280416 -4582211 + (TA)n Simple_repeat Simple_repeat 1 23 0 919 280 96 18 chr9 113280590 113280933 -4581694 - L1MC4a LINE L1 -1904 5904 5535 484 178 0 51 chr9 113281704 113281861 -4580766 + GA-rich Low_complexity Low_complexity 1 149 0 207 180 240 0 chr9 113282091 113282141 -4580486 + MIR SINE MIR 88 149 -113 1262 81 12 2 chr9 113282520 113282934 -4579693 + (TCCA)n Simple_repeat Simple_repeat 1 599 0 216 274 164 40 chr9 113283053 113283279 -4579348 - L2 LINE L2 -146 3126 2873 2354 148 58 0 chr9 113283555 113284000 -4578627 - L1MB3 LINE L1 -15 6168 5698 211 286 26 26 chr9 113284076 113284153 -4578474 - MIR3 SINE MIR -15 193 117 189 320 104 24 chr9 113284571 113284696 -4577931 - MIR SINE MIR -79 183 49 202 345 109 18 chr9 113285919 113286084 -4576543 + L2 LINE L2 2912 3091 -181 180 300 46 39 chr9 113287141 113287271 -4575356 - L2 LINE L2 -222 3050 2920 853 195 59 0 chr9 113287281 113287450 -4575177 + AluJo SINE Alu 42 220 -92 247 191 0 0 chr9 113287451 113287498 -4575129 + Alu SINE Alu 86 132 -1 1893 153 29 16 chr9 113287504 113287777 -4574850 + AluJb SINE Alu 1 280 -32 198 0 0 0 chr9 113287777 113287799 -4574828 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 1893 153 29 16 chr9 113287799 113287833 -4574794 + AluJb SINE Alu 280 312 0 198 235 167 10 chr9 113287833 113287935 -4574692 - MIR3 SINE MIR -80 128 11 2121 117 3 16 chr9 113288031 113288203 -4574424 - AluSx SINE Alu -8 304 136 2591 69 3 0 chr9 113288203 113288507 -4574120 - AluSp SINE Alu -8 305 1 2121 117 3 16 chr9 113288507 113288642 -4573985 - AluSx SINE Alu -176 136 1 274 216 192 64 chr9 113288666 113288791 -4573836 + L2 LINE L2 3171 3311 -2 2306 120 0 3 chr9 113289122 113289431 -4573196 + AluSx SINE Alu 5 312 0 427 134 10 10 chr9 113290212 113290309 -4572318 + CT-rich Low_complexity Low_complexity 2 98 0 231 36 0 0 chr9 113291098 113291126 -4571501 + (TG)n Simple_repeat Simple_repeat 2 29 0 2073 112 29 0 chr9 113291293 113291433 -4571194 - AluSx SINE Alu -27 285 151 2566 57 0 0 chr9 113291433 113291729 -4570898 - AluY SINE Alu -15 296 1 2073 112 29 0 chr9 113291729 113291865 -4570762 - AluSx SINE Alu -161 151 1 294 29 0 0 chr9 113292170 113292205 -4570422 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 2189 82 0 75 chr9 113292277 113292595 -4570032 - AluSg SINE Alu -16 294 1 809 167 23 0 chr9 113292595 113292727 -4569900 - AluJo SINE Alu -177 135 1 244 221 29 0 chr9 113292733 113292801 -4569826 - L1ME LINE L1 -460 5661 5592 2047 104 38 11 chr9 113292868 113293155 -4569472 + AluSc SINE Alu 15 309 0 1291 199 49 93 chr9 113293155 113293311 -4569316 - L1MCa LINE L1 -4422 2185 2024 1659 142 0 73 chr9 113293311 113293481 -4569146 - AluJb SINE Alu -45 267 125 2132 157 0 0 chr9 113293481 113293793 -4568834 + AluSx SINE Alu 1 312 0 1659 142 0 73 chr9 113293793 113293910 -4568717 - AluJb SINE Alu -187 125 1 2312 99 0 3 chr9 113293912 113294205 -4568422 - AluSc SINE Alu -17 292 1 1291 199 49 93 chr9 113294205 113294464 -4568163 - L1MCa LINE L1 -4584 2023 1606 1756 184 3 25 chr9 113294464 113294780 -4567847 - AluJo SINE Alu -3 309 1 1291 199 49 93 chr9 113294780 113294872 -4567755 - L1MCa LINE L1 -5001 1606 1511 1465 190 146 6 chr9 113294938 113294979 -4567648 - MLT2D LTR ERVL 0 414 380 471 35 0 0 chr9 113294979 113295036 -4567591 + (TG)n Simple_repeat Simple_repeat 2 58 0 1465 190 146 6 chr9 113295036 113295357 -4567270 - MLT2D LTR ERVL -34 380 1 1359 217 132 59 chr9 113295862 113296396 -4566231 - MLT1F1 LTR MaLR 0 567 19 228 217 43 29 chr9 113296542 113296611 -4566016 - MIR SINE MIR 0 262 193 305 365 93 17 chr9 113296652 113297008 -4565619 - L2 LINE L2 0 3272 2890 285 263 263 0 chr9 113297064 113297220 -4565407 - MIR SINE MIR -3 259 63 223 279 75 41 chr9 113297312 113297459 -4565168 - L2 LINE L2 -609 2705 2554 2634 141 19 0 chr9 113297465 113297883 -4564744 - MSTA LTR MaLR 0 428 3 420 273 81 77 chr9 113298175 113298302 -4564325 + MIR SINE MIR 53 183 -79 2659 111 8 0 chr9 113298302 113298673 -4563954 + THE1C LTR MaLR 1 374 -1 420 273 81 77 chr9 113298673 113298754 -4563873 + MIR SINE MIR 183 262 0 1738 223 49 20 chr9 113298763 113299211 -4563416 - MLT1C LTR MaLR 0 467 7 1557 192 7 16 chr9 113299688 113299996 -4562631 - AluJo SINE Alu -7 305 1 561 310 122 17 chr9 113300236 113300432 -4562195 + L1ME LINE L1 4934 5171 -975 186 103 0 0 chr9 113300432 113300461 -4562166 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 561 310 122 17 chr9 113300461 113300551 -4562076 + L1ME LINE L1 5171 5250 -896 847 267 37 90 chr9 113300556 113300786 -4561841 + L1ME LINE L1 5260 5464 -2344 2381 74 0 0 chr9 113300786 113301085 -4561542 - AluY SINE Alu -12 299 1 847 267 37 90 chr9 113301085 113301232 -4561395 + L1ME LINE L1 5464 5617 -2191 243 0 0 0 chr9 113301262 113301289 -4561338 + (CA)n Simple_repeat Simple_repeat 2 28 0 1992 144 3 3 chr9 113301323 113301635 -4560992 - AluSx SINE Alu 0 312 1 1990 120 0 38 chr9 113301990 113302306 -4560321 + AluSx SINE Alu 6 309 -3 1962 129 0 3 chr9 113302397 113302684 -4559943 + AluSg SINE Alu 1 286 -24 222 37 0 0 chr9 113302684 113302711 -4559916 + (TTA)n Simple_repeat Simple_repeat 2 28 0 665 192 138 0 chr9 113302716 113302846 -4559781 - FRAM SINE Alu -18 148 1 272 293 0 22 chr9 113302846 113302927 -4559700 + L1ME LINE L1 5686 5768 -353 427 98 16 0 chr9 113302927 113302988 -4559639 + U7 snRNA snRNA 2 63 0 2169 110 3 3 chr9 113303152 113303462 -4559165 + AluSq SINE Alu 1 310 -3 727 168 8 0 chr9 113303472 113303603 -4559024 + L1PB4 LINE L1 6022 6153 -3 1778 134 3 14 chr9 113303645 113303928 -4558699 + MER65A LTR ERV1 1 280 -165 1388 108 61 0 chr9 113303928 113304141 -4558486 - AluSq SINE Alu -5 308 83 821 112 6 62 chr9 113304141 113304302 -4558325 + MER65A LTR ERV1 294 445 0 728 285 103 4 chr9 113304331 113304594 -4558033 + L1MC4 LINE L1 6696 6984 -1058 1753 227 20 27 chr9 113304604 113305063 -4557564 + MLT1C LTR MaLR 6 616 -10 489 83 0 83 chr9 113305117 113305201 -4557426 + L1PA10 LINE L1 6091 6167 -1 1821 174 6 3 chr9 113305261 113305572 -4557055 + AluJo SINE Alu 1 312 0 682 279 122 19 chr9 113305694 113306064 -4556563 + L1MC4a LINE L1 7020 7415 -393 269 156 109 0 chr9 113306068 113306132 -4556495 - MER65A LTR ERV1 -18 427 357 1410 218 111 17 chr9 113306142 113306504 -4556123 + MSTD LTR MaLR 1 396 0 584 298 37 57 chr9 113306504 113306910 -4555717 + L1MC5 LINE L1 7362 7759 -202 195 42 0 0 chr9 113306935 113306959 -4555668 + (TG)n Simple_repeat Simple_repeat 2 25 0 2162 104 3 3 chr9 113306968 113307265 -4555362 - AluSx SINE Alu -15 297 1 387 0 0 0 chr9 113307270 113307313 -4555314 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1596 163 10 28 chr9 113307315 113307603 -4555024 - AluJo SINE Alu -27 285 3 21 71 0 0 chr9 113307608 113307650 -4554977 + AT_rich Low_complexity Low_complexity 1 42 0 28 29 0 0 chr9 113307770 113307805 -4554822 + AT_rich Low_complexity Low_complexity 1 35 0 199 184 0 41 chr9 113307890 113307939 -4554688 + MIR SINE MIR 101 147 -61 2909 178 12 40 chr9 113307974 113308211 -4554416 - L1MB3 LINE L1 -5 6178 5936 2253 82 0 7 chr9 113308211 113308514 -4554113 - AluSx SINE Alu -11 301 1 2909 178 12 40 chr9 113308514 113308849 -4553778 - L1MB3 LINE L1 -247 5936 5622 243 88 0 0 chr9 113309609 113309643 -4552984 + (CACG)n Simple_repeat Simple_repeat 1 34 0 710 135 10 0 chr9 113310242 113310346 -4552281 - FLAM_C SINE Alu -37 106 2 299 304 0 11 chr9 113310764 113310856 -4551771 + GA-rich Low_complexity Low_complexity 2 92 0 2145 120 0 0 chr9 113310875 113311174 -4551453 + AluSx SINE Alu 1 299 -13 1758 147 0 49 chr9 113311177 113311324 -4551303 + AluJo SINE Alu 1 127 -185 2206 106 0 0 chr9 113311324 113311625 -4551002 + AluSx SINE Alu 1 301 -11 1758 147 0 49 chr9 113311625 113311784 -4550843 + AluJo SINE Alu 127 292 -20 197 306 231 7 chr9 113312784 113312931 -4549696 - L2 LINE L2 -212 3060 2881 826 210 109 28 chr9 113313067 113313315 -4549312 + MLT1K LTR MaLR 159 426 -162 192 77 0 0 chr9 113313316 113313342 -4549285 + (TTCA)n Simple_repeat Simple_repeat 2 27 0 387 302 15 92 chr9 113313356 113313500 -4549127 - L2 LINE L2 -33 3280 3173 2296 78 0 13 chr9 113313500 113313807 -4548820 + AluSx SINE Alu 1 303 -9 387 302 15 92 chr9 113313807 113313990 -4548637 - L2 LINE L2 -140 3173 2978 368 307 51 34 chr9 113313991 113314167 -4548460 + MLT1K LTR MaLR 378 556 -32 704 154 45 0 chr9 113314168 113314278 -4548349 + FLAM_A SINE Alu 2 116 -17 185 284 86 9 chr9 113314555 113314671 -4547956 + L2 LINE L2 2925 3049 -223 657 122 0 0 chr9 113315665 113315755 -4546872 + AluJo SINE Alu 2 91 -221 434 234 21 0 chr9 113315755 113315849 -4546778 - L1M3 LINE L1 -463 5720 5625 1286 146 10 0 chr9 113315926 113316152 -4546475 + AluJo SINE Alu 82 309 0 2052 117 3 7 chr9 113316152 113316442 -4546185 - AluSp SINE Alu -24 289 1 603 216 20 4 chr9 113317282 113317538 -4545089 + GA-rich Low_complexity Low_complexity 1 260 0 26 0 0 0 chr9 113317598 113317624 -4545003 + AT_rich Low_complexity Low_complexity 1 26 0 2025 102 61 0 chr9 113318430 113318724 -4543903 - AluSx SINE Alu 0 312 1 3082 154 21 23 chr9 113319684 113320081 -4542546 - L1MB3 LINE L1 -1 6182 5786 216 0 0 0 chr9 113320081 113320105 -4542522 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1822 123 18 4 chr9 113320105 113320382 -4542245 - AluSx SINE Alu -31 281 1 3082 154 21 23 chr9 113320382 113320542 -4542085 - L1MB3 LINE L1 -395 5788 5625 1355 166 0 0 chr9 113320622 113320839 -4541788 + AluJb SINE Alu 82 298 -14 2243 78 7 0 chr9 113320944 113321238 -4541389 - AluSx SINE Alu -16 296 1 292 344 0 0 chr9 113321396 113321486 -4541141 - MIR3 SINE MIR -12 196 107 2234 95 0 10 chr9 113322376 113322680 -4539947 - AluSg SINE Alu -9 301 1 216 293 13 13 chr9 113322801 113322876 -4539751 + MIR SINE MIR 74 148 -60 182 365 151 6 chr9 113323034 113323193 -4539434 + MIR SINE MIR 17 198 -64 194 313 12 12 chr9 113323599 113323679 -4538948 - MIR3 SINE MIR -3 205 126 193 294 59 0 chr9 113323848 113323916 -4538711 - MIR SINE MIR -81 181 110 192 273 40 61 chr9 113324450 113324549 -4538078 + MIR SINE MIR 35 131 -77 288 296 104 9 chr9 113324915 113325030 -4537597 - MIR SINE MIR -115 147 22 879 239 25 10 chr9 113325262 113325463 -4537164 - MLT1C LTR MaLR -17 450 247 1083 179 72 36 chr9 113325469 113325748 -4536879 - MLT1C LTR MaLR -173 294 6 1935 120 0 4 chr9 113327023 113327320 -4535307 - AluSx SINE Alu 0 307 12 460 246 38 3 chr9 113327791 113327986 -4534641 - MIR SINE MIR -7 255 6 265 301 73 0 chr9 113328002 113328138 -4534489 - MIR3 SINE MIR -26 182 37 888 212 0 0 chr9 113329344 113329749 -4532878 + (TTCA)n Simple_repeat Simple_repeat 1 405 0 309 324 48 0 chr9 113329760 113329865 -4532762 - L2 LINE L2 -19 3253 3144 282 303 8 42 chr9 113330368 113330487 -4532140 + MIR3 SINE MIR 72 186 -22 208 328 0 0 chr9 113330881 113330942 -4531685 - L2 LINE L2 -7 3306 3246 1661 203 74 5 chr9 113331114 113331494 -4531133 - MLT1D LTR MaLR -1 504 99 510 165 46 28 chr9 113331495 113331604 -4531023 + MLT1D LTR MaLR 2 112 -393 413 229 59 32 chr9 113331609 113331773 -4530854 + MIR SINE MIR 69 241 -21 366 216 86 43 chr9 113332062 113332178 -4530449 - MIR SINE MIR -37 225 105 2014 100 0 4 chr9 113332211 113332503 -4530124 + AluSx SINE Alu 15 305 0 282 259 93 29 chr9 113333010 113333149 -4529478 + MER103 DNA DNA 8 155 -11 274 267 116 0 chr9 113333168 113333254 -4529373 - MIR SINE MIR -94 114 19 308 303 106 0 chr9 113333596 113333738 -4528889 - MIR3 SINE MIR -15 193 37 378 222 46 0 chr9 113334564 113334672 -4527955 - MIR SINE MIR -65 143 31 229 248 9 106 chr9 113336028 113336141 -4526486 + L2 LINE L2 2886 2987 -285 246 221 29 0 chr9 113336166 113336234 -4526393 + L1ME LINE L1 5592 5661 -460 801 163 23 0 chr9 113336243 113336372 -4526255 + AluJo SINE Alu 4 135 -177 2041 86 0 70 chr9 113336372 113336687 -4525940 + AluSg SINE Alu 1 293 -17 222 37 0 0 chr9 113336759 113336786 -4525841 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 1927 116 29 0 chr9 113337091 113337227 -4525400 + AluSx SINE Alu 1 132 -180 2445 57 0 0 chr9 113337227 113337524 -4525103 + AluY SINE Alu 1 297 -14 1927 116 29 0 chr9 113337524 113337664 -4524963 + AluSx SINE Alu 132 285 -27 231 36 0 0 chr9 113337831 113337859 -4524768 + (CA)n Simple_repeat Simple_repeat 2 29 0 213 39 0 0 chr9 113339867 113339893 -4522734 + (CA)n Simple_repeat Simple_repeat 2 27 0 * 387 0 0 0 chr9 113339892 113339935 -4522692 + (TC)n Simple_repeat Simple_repeat 1 43 0 447 156 63 54 chr9 113339940 113340127 -4522500 - MER21A LTR ERV1 -27 904 677 640 130 22 0 chr9 113340128 113340249 -4522378 + AluSg/x SINE Alu 187 309 0 2000 167 48 35 chr9 113340249 113340621 -4522006 - MER21A LTR ERV1 -244 687 311 1289 124 48 172 chr9 113340781 113341136 -4521491 - MER21A LTR ERV1 -620 311 1 2194 84 3 35 chr9 113341454 113341764 -4520863 + AluSg SINE Alu 1 300 -10 1903 132 24 0 chr9 113341778 113342065 -4520562 + AluJb SINE Alu 4 297 -15 2223 88 3 13 chr9 113342134 113342439 -4520188 - AluSq SINE Alu -11 302 1 196 341 0 62 chr9 113343122 113343251 -4519376 + MIR SINE MIR 27 147 -115 277 319 123 6 chr9 113343425 113343588 -4519039 + LTR16C LTR ERVL 304 485 -6 285 312 78 7 chr9 113343599 113343740 -4518887 + MIR SINE MIR 70 220 -42 1860 134 3 0 chr9 113344135 113344418 -4518209 - AluSx SINE Alu -28 284 1 1765 159 16 26 chr9 113344440 113344748 -4517879 + AluJb SINE Alu 1 305 -7 226 231 183 10 chr9 113344916 113345020 -4517607 + L2 LINE L2 3151 3272 0 2593 124 16 26 chr9 113345057 113345485 -4517142 - MER57B LTR ERV1 -10 424 1 522 124 21 41 chr9 113345485 113345582 -4517045 - MER57B-int LTR ERV1 0 7537 7443 1883 100 0 0 chr9 113395582 113395833 -4466794 + AluSx SINE Alu 59 309 -3 390 205 0 0 chr9 113395834 113395917 -4466710 - MER53 DNA DNA -106 83 1 670 203 25 6 chr9 113396840 113397003 -4465624 + MER20 DNA MER1_type 33 198 -21 1912 145 0 0 chr9 113398136 113398419 -4464208 + AluSx SINE Alu 1 326 0 212 70 23 23 chr9 113398419 113398462 -4464165 + (TAAA)n Simple_repeat Simple_repeat 3 180 0 278 341 32 2 chr9 113399170 113399291 -4463336 + MIR SINE MIR 56 180 -28 387 268 141 66 chr9 113400671 113400869 -4461758 - MIR SINE MIR -36 226 14 1667 135 51 26 chr9 113401597 113401909 -4460718 + MSTC LTR MaLR 1 320 -108 903 170 27 131 chr9 113402140 113402362 -4460265 + MER51C LTR ERV1 341 518 -122 1857 101 84 7 chr9 113402362 113402649 -4459978 - AluSq SINE Alu -4 309 1 903 170 27 131 chr9 113402649 113402761 -4459866 + MER51C LTR ERV1 518 640 0 602 103 41 0 chr9 113402761 113402858 -4459769 + MSTC LTR MaLR 317 417 -11 1092 178 37 8 chr9 113404251 113404563 -4458064 - L1MB4 LINE L1 0 6180 5817 2198 112 3 7 chr9 113404563 113404867 -4457760 - AluSq SINE Alu -10 303 1 1092 178 37 8 chr9 113404867 113404898 -4457729 - L1MB4 LINE L1 -363 5817 5788 3370 244 91 41 chr9 113404933 113405400 -4457227 - L1M4c LINE L1 -2797 3847 3405 1990 121 0 11 chr9 113405400 113405680 -4456947 + AluSg SINE Alu 3 279 -31 3370 244 91 41 chr9 113405680 113405707 -4456920 - L1M4c LINE L1 -3239 3405 3381 617 148 30 10 chr9 113405707 113405808 -4456819 + U13 snRNA snRNA 1 103 -1 3370 244 91 41 chr9 113405808 113405940 -4456687 - L1M4c LINE L1 -3263 3381 3257 2193 106 3 0 chr9 113405940 113406232 -4456395 + AluSq SINE Alu 2 294 -19 3370 244 91 41 chr9 113406232 113406712 -4455915 - L1M4c LINE L1 -3387 3257 2802 2031 136 0 20 chr9 113406712 113407014 -4455613 + AluSx SINE Alu 1 296 -16 3370 244 91 41 chr9 113407014 113407026 -4455601 - L1M4c LINE L1 -3842 2802 2792 1659 137 89 0 chr9 113407026 113407296 -4455331 + AluSq SINE Alu 1 294 -19 3370 244 91 41 chr9 113407296 113407347 -4455280 - L1M4c LINE L1 -3852 2792 2745 1849 159 6 22 chr9 113407347 113407662 -4454965 - AluJb SINE Alu -2 310 1 3370 244 91 41 chr9 113407662 113408331 -4454296 - L1M4c LINE L1 -3899 2745 2111 2120 115 3 0 chr9 113408331 113408618 -4454009 - AluSx SINE Alu -24 288 1 3370 244 91 41 chr9 113408618 113409603 -4453024 - L1M4c LINE L1 -4533 2111 797 308 288 29 50 chr9 113409598 113409737 -4452890 - L1M4c LINE L1 -6217 429 294 * 2101 123 0 0 chr9 113409753 113410053 -4452574 - AluY SINE Alu -11 300 1 238 277 75 11 chr9 113411932 113412026 -4450601 + MIR SINE MIR 48 147 -115 321 265 96 12 chr9 113412206 113412289 -4450338 - L1MC4 LINE L1 -1339 6703 6614 250 296 61 43 chr9 113412291 113412406 -4450221 - MIR SINE MIR -59 203 87 208 316 61 0 chr9 113413655 113413753 -4448874 + L2 LINE L2 2490 2593 -721 225 315 56 0 chr9 113413826 113413915 -4448712 + L2 LINE L2 2753 2846 -468 499 276 38 23 chr9 113414848 113415049 -4447578 - MIR3 SINE MIR -36 172 22 2098 113 3 3 chr9 113417168 113417461 -4445166 + AluSx SINE Alu 6 298 -14 326 273 0 0 chr9 113417568 113417645 -4444982 - MIR SINE MIR -58 150 74 510 67 0 0 chr9 113418452 113418527 -4444100 + (CCCCAG)n Simple_repeat Simple_repeat 6 80 0 931 154 45 0 chr9 113418846 113419002 -4443625 - AluSq SINE Alu -14 299 137 251 337 112 11 chr9 113420340 113420518 -4442109 - MIR SINE MIR -35 227 32 387 310 6 17 chr9 113420845 113421019 -4441608 + (CTGGGG)n Simple_repeat Simple_repeat 4 175 0 192 100 33 0 chr9 113421696 113421726 -4440901 + L2 LINE L2 3183 3213 -100 180 111 0 0 chr9 113422147 113422174 -4440453 + (CCCCAG)n Simple_repeat Simple_repeat 3 29 0 420 243 14 56 chr9 113422350 113422494 -4440133 + L2 LINE L2 3176 3313 0 291 361 36 24 chr9 113422699 113422865 -4439762 - MIR SINE MIR -35 227 60 820 139 0 56 chr9 113423253 113423397 -4439230 + AluJb SINE Alu 1 136 -176 1728 166 49 0 chr9 113423409 113423693 -4438934 + AluJo SINE Alu 1 298 -14 230 221 3 81 chr9 113423780 113423888 -4438739 - MIR SINE MIR -28 180 80 1950 127 42 0 chr9 113423906 113424190 -4438437 - AluSx SINE Alu -16 296 1 309 280 24 64 chr9 113425073 113425198 -4437429 - MIR SINE MIR -109 153 34 201 247 89 96 chr9 113429325 113429471 -4433156 - MIR3 SINE MIR -47 161 17 229 291 58 0 chr9 113429493 113429579 -4433048 - MIR3 SINE MIR -52 156 66 377 294 108 31 chr9 113429788 113429982 -4432645 - MIR SINE MIR -32 230 22 428 319 14 0 chr9 113431023 113431161 -4431466 + MIR SINE MIR 47 186 -76 266 338 76 41 chr9 113431403 113431548 -4431079 + MIR SINE MIR 43 192 -70 57 0 0 0 chr9 113433770 113433827 -4428800 + GC_rich Low_complexity Low_complexity 1 57 0 22 0 0 0 chr9 113433953 113433975 -4428652 + GC_rich Low_complexity Low_complexity 1 22 0 604 284 33 24 chr9 113434214 113434425 -4428202 + MIR SINE MIR 31 243 -19 285 156 0 0 chr9 113435012 113435057 -4427570 + MIR3 SINE MIR 115 159 -49 1859 128 21 0 chr9 113435326 113435607 -4427020 - AluSx SINE Alu -25 287 1 516 200 0 0 chr9 113436282 113436457 -4426170 + (CA)n Simple_repeat Simple_repeat 2 176 0 387 216 0 0 chr9 113436473 113436635 -4425992 + (CA)n Simple_repeat Simple_repeat 1 162 0 273 187 0 75 chr9 113436638 113436745 -4425882 + (CAGAGA)n Simple_repeat Simple_repeat 2 100 0 781 143 45 0 chr9 113436745 113436878 -4425749 + BC200 scRNA scRNA 1 139 -61 186 227 0 0 chr9 113436889 113436964 -4425663 + (CA)n Simple_repeat Simple_repeat 2 76 0 1150 249 133 25 chr9 113437218 113437781 -4424846 + L1MC5 LINE L1 7303 7926 -35 2303 93 0 7 chr9 113437796 113438096 -4424531 + AluSx SINE Alu 1 298 -14 753 262 79 0 chr9 113438687 113438916 -4423711 + Charlie8 DNA MER1_type 4 250 -2167 312 224 178 9 chr9 113441002 113441109 -4421518 + MIR SINE MIR 32 156 -106 2138 103 6 40 chr9 113442148 113442324 -4420303 - AluSx SINE Alu -2 310 148 2164 104 3 0 chr9 113442324 113442612 -4420015 - AluSg SINE Alu -21 289 1 2138 103 6 40 chr9 113442612 113442756 -4419871 - AluSx SINE Alu -164 148 1 290 274 9 57 chr9 113443043 113443149 -4419478 - MIR3 SINE MIR -26 182 82 285 250 15 0 chr9 113444139 113444207 -4418420 + MIR SINE MIR 81 149 -113 209 300 0 0 chr9 113444324 113444374 -4418253 + L2 LINE L2 3213 3262 -10 182 212 0 0 chr9 113444825 113444858 -4417769 + MIR SINE MIR 111 143 -65 2364 75 3 0 chr9 113444974 113445279 -4417348 - AluSg SINE Alu -4 306 1 427 302 87 13 chr9 113446786 113446935 -4415692 - MIR SINE MIR -95 167 8 294 310 129 26 chr9 113447186 113447302 -4415325 - MIR SINE MIR -122 140 13 381 359 56 39 chr9 113447944 113448178 -4414449 + MIR SINE MIR 13 250 -12 198 270 122 0 chr9 113448197 113448271 -4414356 - MER5C DNA MER1_type -17 307 225 232 283 101 0 chr9 113448280 113448379 -4414248 - MER5C DNA MER1_type -200 124 16 263 292 199 31 chr9 113448425 113448651 -4413976 - L2 LINE L2 -19 3294 3031 2057 111 0 36 chr9 113448697 113448838 -4413789 + AluSx SINE Alu 1 146 -166 2289 69 10 0 chr9 113448838 113449129 -4413498 + AluSg SINE Alu 4 297 -13 2057 111 0 36 chr9 113449129 113449294 -4413333 + AluSx SINE Alu 146 296 -16 2221 92 7 0 chr9 113449294 113449586 -4413041 + AluSx SINE Alu 1 294 -18 347 269 115 10 chr9 113449636 113449740 -4412887 + L2 LINE L2 3156 3270 -2 202 292 31 0 chr9 113450884 113450949 -4411678 - MIR SINE MIR -83 179 113 2065 107 38 0 chr9 113450987 113451277 -4411350 - AluSx SINE Alu -11 301 1 1191 237 13 48 chr9 113451492 113451631 -4410996 - L1M4 LINE L1 -985 5161 5019 1619 132 4 44 chr9 113451631 113451903 -4410724 - AluSx SINE Alu -51 261 1 1191 237 13 48 chr9 113451903 113452156 -4410471 - L1M4 LINE L1 -1127 5019 4783 * 1442 237 38 36 chr9 113452145 113452262 -4410365 - L1M4 LINE L1 -1830 4316 4201 2298 75 0 0 chr9 113452262 113452568 -4410059 + AluSg SINE Alu 1 306 0 1442 237 38 36 chr9 113452568 113452925 -4409702 - L1M4 LINE L1 -1945 4201 3840 * 1446 244 34 10 chr9 113452909 113453406 -4409221 - L1M4 LINE L1 -2532 3614 3106 222 37 0 0 chr9 113453424 113453451 -4409176 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1596 174 45 0 chr9 113453454 113453719 -4408908 - AluJb SINE Alu -32 280 4 2319 96 3 0 chr9 113454712 113455014 -4407613 + AluSx SINE Alu 1 303 -9 289 369 39 47 chr9 113455134 113455494 -4407133 + MER57B-int LTR ERV1 1237 1593 -5208 2147 114 0 0 chr9 113455808 113456107 -4406520 - AluSx SINE Alu -13 299 1 650 362 40 40 chr9 113456889 113457197 -4405430 + MER57B-int LTR ERV1 125 431 -6370 1977 113 3 17 chr9 113457197 113457489 -4405138 + AluSq SINE Alu 11 298 -15 650 362 40 40 chr9 113457489 113458886 -4403741 + MER57B-int LTR ERV1 431 3943 -2858 1865 226 4 37 chr9 113458908 113459400 -4403227 + MER57B-int LTR ERV1 5287 5762 -1775 2334 64 0 7 chr9 113459438 113459734 -4402893 + AluY SINE Alu 1 294 -17 785 234 5 5 chr9 113459735 113459919 -4402708 + MER57B-int LTR ERV1 6021 6204 -1333 2273 87 0 17 chr9 113460242 113460541 -4402086 + AluSq SINE Alu 1 294 -19 2238 98 3 0 chr9 113461215 113461510 -4401117 + AluSx SINE Alu 1 296 -16 590 350 8 4 chr9 113462040 113462277 -4400350 + MER57B-int LTR ERV1 6817 7054 -483 508 171 20 49 chr9 113462273 113462429 -4400198 + MER57B-int LTR ERV1 6996 7537 0 * 2444 122 16 26 chr9 113462429 113462857 -4399770 + MER57B LTR ERV1 1 424 -10 244 231 183 10 chr9 113462894 113462998 -4399629 - L2 LINE L2 0 3272 3151 1803 159 16 26 chr9 113463166 113463474 -4399153 - AluJb SINE Alu -7 305 1 1959 124 3 0 chr9 113463496 113463779 -4398848 + AluSx SINE Alu 1 284 -28 309 312 78 7 chr9 113464175 113464316 -4398311 - MIR SINE MIR -42 220 70 249 299 112 0 chr9 113464327 113464434 -4398193 - LTR16C LTR ERVL -6 485 367 228 341 0 62 chr9 113464663 113464792 -4397835 - MIR SINE MIR -115 147 27 2223 92 3 13 chr9 113465474 113465779 -4396848 + AluSq SINE Alu 1 302 -11 1935 132 24 0 chr9 113465848 113466135 -4396492 - AluJb SINE Alu -15 297 4 2232 84 3 32 chr9 113466149 113466459 -4396168 - AluSg SINE Alu -9 301 1 302 374 121 6 chr9 113466571 113466745 -4395882 - L1ME LINE L1 -418 5703 5510 1163 124 48 172 chr9 113466777 113467132 -4395495 + MER21A LTR ERV1 1 311 -620 1844 167 48 35 chr9 113467292 113467664 -4394963 + MER21A LTR ERV1 311 687 -244 210 37 0 0 chr9 113467664 113467691 -4394936 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 643 130 22 0 chr9 113467693 113467785 -4394842 - AluSg/x SINE Alu -30 280 187 417 152 68 54 chr9 113467786 113467972 -4394655 + MER21A LTR ERV1 677 904 -27 369 0 0 0 chr9 113467977 113468018 -4394609 + (GA)n Simple_repeat Simple_repeat 1 41 0 195 42 0 0 chr9 113468017 113468041 -4394586 + (TG)n Simple_repeat Simple_repeat 2 25 0 * 214 150 25 0 chr9 113469612 113469652 -4392975 - MIR SINE MIR -63 145 105 318 308 96 0 chr9 113469912 113470016 -4392611 + L2 LINE L2 3159 3272 0 * 335 247 101 0 chr9 113470011 113470100 -4392527 - MIR SINE MIR -58 204 107 243 281 141 25 chr9 113470109 113470230 -4392397 - L2 LINE L2 0 3272 3138 1936 77 49 45 chr9 113470315 113470602 -4392025 + AluSx SINE Alu 1 288 -24 324 154 31 0 chr9 113470602 113470667 -4391960 + Alu SINE Alu 235 301 0 717 151 0 0 chr9 113470737 113470843 -4391784 - FLAM_C SINE Alu -37 106 1 221 122 49 0 chr9 113470881 113470922 -4391705 + (CAGAGA)n Simple_repeat Simple_repeat 4 46 0 1924 132 24 0 chr9 113473559 113473847 -4388780 + AluSp SINE Alu 1 295 -18 259 286 0 127 chr9 113474074 113474263 -4388364 + C-rich Low_complexity Low_complexity 4 168 0 206 250 31 0 chr9 113474445 113474509 -4388118 + L2 LINE L2 2925 2990 -323 2076 119 0 0 chr9 113475365 113475658 -4386969 - AluSx SINE Alu -11 301 9 1560 147 55 15 chr9 113476081 113476389 -4386238 - AluSx SINE Alu 0 319 1 26 0 0 0 chr9 113476389 113476415 -4386212 + AT_rich Low_complexity Low_complexity 1 26 0 1552 157 29 21 chr9 113476600 113476880 -4385747 - AluJo SINE Alu -30 282 1 2017 139 0 13 chr9 113477136 113477439 -4385188 + AluSx SINE Alu 1 299 -13 1635 178 17 0 chr9 113477446 113477738 -4384889 + L1MB3 LINE L1 5886 6182 -1 1746 178 3 19 chr9 113477813 113478128 -4384499 + AluJb SINE Alu 1 310 -2 2263 85 0 0 chr9 113478239 113478532 -4384095 - AluSc SINE Alu -16 293 1 492 289 28 0 chr9 113478571 113478713 -4383914 - MIR SINE MIR -89 173 28 270 330 87 9 chr9 113478814 113478929 -4383698 - MIR SINE MIR -15 247 124 611 237 129 42 chr9 113478934 113479086 -4383541 - MLT2C1 LTR ERVL -5 392 255 1946 141 0 13 chr9 113479086 113479385 -4383242 - AluJo SINE Alu -7 305 11 611 237 129 42 chr9 113479385 113479519 -4383108 - MLT2C1 LTR ERVL -142 255 81 713 182 0 8 chr9 113479519 113479640 -4382987 + AluJo SINE Alu 82 201 -111 2346 83 0 0 chr9 113479717 113480017 -4382610 - AluSg SINE Alu -10 300 1 360 219 62 39 chr9 113480060 113480188 -4382439 + MIR SINE MIR 15 145 -117 291 273 154 7 chr9 113480653 113480796 -4381831 + MIR SINE MIR 80 243 -19 541 250 77 43 chr9 113480831 113481039 -4381588 - MIR SINE MIR -2 260 46 198 275 283 17 chr9 113481783 113481903 -4380724 + MIR SINE MIR 101 252 -10 257 303 53 15 chr9 113481940 113482072 -4380555 - MIR SINE MIR -78 184 48 2288 94 10 0 chr9 113483459 113483767 -4378860 - AluSq SINE Alu -2 311 1 304 234 135 27 chr9 113484828 113484939 -4377688 - MIR SINE MIR -63 145 23 823 120 0 70 chr9 113485371 113485513 -4377114 + AluJo/FLAM SINE Alu 1 132 -180 2279 116 0 0 chr9 113485513 113485823 -4376804 + AluSg SINE Alu 1 310 0 1987 111 0 21 chr9 113485828 113486116 -4376511 + AluSq SINE Alu 1 282 -31 2241 86 3 0 chr9 113486116 113486407 -4376220 + AluSq SINE Alu 6 297 -16 33 109 0 0 chr9 113487081 113487219 -4375408 + GC_rich Low_complexity Low_complexity 1 138 0 194 301 44 35 chr9 113487558 113487671 -4374956 - MIR3 SINE MIR -53 155 42 218 288 15 0 chr9 113487787 113487853 -4374774 + (CA)n Simple_repeat Simple_repeat 1 67 0 207 318 15 0 chr9 113488160 113488226 -4374401 + MIR3 SINE MIR 118 184 -24 267 282 85 79 chr9 113488967 113489297 -4373330 - L2 LINE L2 -96 3176 2845 1051 290 95 34 chr9 113489315 113489853 -4372774 - MLT1E LTR MaLR -17 576 6 1973 119 0 14 chr9 113489902 113490220 -4372407 + AluSx SINE Alu 1 314 0 266 257 54 0 chr9 113490302 113490376 -4372251 - MIR3 SINE MIR -54 154 77 306 292 0 22 chr9 113490422 113490511 -4372116 - MLT1B LTR MaLR -59 331 245 356 368 7 21 chr9 113490551 113490695 -4371932 - MIR SINE MIR -54 208 67 1615 214 97 23 chr9 113491183 113491614 -4371013 - MLT1C LTR MaLR -4 463 1 1485 128 72 11 chr9 113492567 113492920 -4369707 - AluJb SINE Alu 0 370 2 223 329 14 0 chr9 113493140 113493213 -4369414 + MIR3 SINE MIR 3 76 -132 347 283 113 0 chr9 113493345 113493451 -4369176 - MIR SINE MIR -78 184 67 297 269 92 8 chr9 113494484 113494603 -4368024 + MIR3 SINE MIR 9 137 -71 226 315 45 0 chr9 113494791 113494880 -4367747 + MIR SINE MIR 29 121 -141 374 279 91 1 chr9 113495243 113495375 -4367252 + MIR SINE MIR 34 174 -58 207 0 0 0 chr9 113496255 113496278 -4366349 + (CACCC)n Simple_repeat Simple_repeat 4 26 0 202 326 20 31 chr9 113496687 113496785 -4365842 - MIR3 SINE MIR -29 179 83 356 156 16 0 chr9 113497446 113497521 -4365106 + AluS SINE Alu 1 62 -241 1663 185 57 3 chr9 113700265 113700616 -4162011 + L1MB3 LINE L1 5814 6183 0 258 234 112 65 chr9 113700626 113700733 -4161894 - MER81 DNA DNA -1 113 2 2170 106 0 0 chr9 113700752 113701035 -4161592 + AluSx SINE Alu 1 283 -29 514 258 166 22 chr9 113701618 113702062 -4160565 + MLT1G3 LTR MaLR 2 590 -5 344 282 93 36 chr9 113702064 113702508 -4160119 - L2 LINE L2 -268 3004 2456 1853 133 5 109 chr9 113704178 113704279 -4158348 + MER44D DNA MER2_type 1 111 -2380 1565 187 25 35 chr9 113704279 113704594 -4158033 + AluJo SINE Alu 1 312 0 1853 133 5 109 chr9 113704594 113704664 -4157963 + MER44D DNA MER2_type 111 187 -2304 1587 86 68 5 chr9 113704664 113704924 -4157703 - AluSq SINE Alu 0 320 47 1853 133 5 109 chr9 113704924 113705125 -4157502 + MER44D DNA MER2_type 187 606 -3 376 285 57 0 chr9 113705293 113705451 -4157176 - HAL1 LINE L1 -805 1702 1536 362 208 30 30 chr9 113705472 113705573 -4157054 - L1ME3 LINE L1 -3 6159 6059 1996 218 92 11 chr9 113705620 113706185 -4156442 - L1ME3 LINE L1 -235 5929 5319 1745 177 10 7 chr9 113706186 113706507 -4156120 - AluJb SINE Alu 0 322 1 1295 169 0 0 chr9 113706512 113706713 -4155914 - AluJo SINE Alu -17 295 95 1461 168 182 133 chr9 113706713 113706799 -4155828 - L1ME3 LINE L1 -840 5306 5226 2438 119 17 31 chr9 113706799 113707063 -4155564 + L1MA2 LINE L1 5885 6142 -162 1931 117 20 96 chr9 113707063 113707200 -4155427 + AluYb8 SINE Alu 1 147 -171 2410 100 0 3 chr9 113707200 113707510 -4155117 + AluSg SINE Alu 1 309 -1 1931 117 20 96 chr9 113707510 113707715 -4154912 + AluYb8 SINE Alu 147 317 -1 2438 119 17 31 chr9 113707715 113707869 -4154758 + L1MA2 LINE L1 6142 6297 -7 1461 168 182 133 chr9 113707869 113708557 -4154070 - L1ME3 LINE L1 -920 5226 4573 1679 161 73 3 chr9 113708557 113708843 -4153784 - AluJb SINE Alu -4 308 3 1461 168 182 133 chr9 113708843 113709003 -4153624 - L1ME3 LINE L1 -1573 4573 4318 1862 159 10 22 chr9 113709003 113709317 -4153310 - AluSx SINE Alu -2 310 1 1461 168 182 133 chr9 113709317 113709365 -4153262 - L1ME3 LINE L1 -1828 4318 4274 1209 277 50 48 chr9 113709456 113710194 -4152433 + L1MEc LINE L1 1731 2430 -3785 2247 114 0 7 chr9 113710194 113710493 -4152134 - AluSx SINE Alu -15 297 1 1209 277 50 48 chr9 113710493 113710615 -4152012 + L1MEc LINE L1 2430 2550 -3665 3250 108 17 2 chr9 113710615 113711095 -4151532 + LTR15 LTR ERV1 1 487 -6 2556 237 77 34 chr9 113711100 113711163 -4151464 + L1MEc LINE L1 2546 2605 -3610 1915 162 33 3 chr9 113711163 113711466 -4151161 + AluJb SINE Alu 1 312 0 2556 237 77 34 chr9 113711466 113712338 -4150289 + L1MEc LINE L1 2605 3521 -2694 * 3309 193 90 28 chr9 113712306 113712518 -4150109 + L1MB7 LINE L1 5093 5291 -962 369 0 0 0 chr9 113712518 113712559 -4150068 + (TA)n Simple_repeat Simple_repeat 1 41 0 3309 193 90 28 chr9 113712559 113712799 -4149828 + L1MB7 LINE L1 5291 5515 -738 2109 150 0 0 chr9 113712799 113713105 -4149522 + AluJb SINE Alu 1 306 -6 3309 193 90 28 chr9 113713105 113713740 -4148887 + L1MB7 LINE L1 5515 6251 -2 4936 59 56 0 chr9 113713863 113714488 -4148139 + PABL_A LTR ERV1 1 660 0 245 222 63 0 chr9 113715899 113715962 -4146665 - LTR9 LTR ERV1 0 612 546 422 113 48 0 chr9 113715962 113716024 -4146603 - AluS SINE Alu -246 67 3 34 72 0 0 chr9 113716672 113716741 -4145886 + GC_rich Low_complexity Low_complexity 1 69 0 194 278 19 0 chr9 113717546 113717600 -4145027 + L2 LINE L2 2453 2507 -807 2322 104 0 3 chr9 113717642 113717949 -4144678 + AluSx SINE Alu 1 306 -6 1936 221 41 30 chr9 113717953 113718259 -4144368 + L1MB3 LINE L1 5610 5926 -257 2185 114 7 0 chr9 113718259 113718556 -4144071 - AluSx SINE Alu -13 299 1 1936 221 41 30 chr9 113718556 113718809 -4143818 + L1MB3 LINE L1 5926 6175 -8 356 209 11 0 chr9 113718809 113718900 -4143727 + GA-rich Low_complexity Low_complexity 3 94 0 422 192 15 85 chr9 113719265 113719395 -4143232 + MER34B LTR ERV1 5 125 -440 249 357 83 0 chr9 113719501 113719669 -4142958 + MER34B LTR ERV1 301 482 -83 1222 202 34 4 chr9 113720159 113720397 -4142230 - LTR10B LTR ERV1 0 547 303 4269 254 6 14 chr9 113720510 113721582 -4141045 - HERVI LTR ERV1 0 6649 5587 6300 269 29 27 chr9 113721780 113723255 -4139372 - HERVI LTR ERV1 -1781 6004 4521 2309 84 3 0 chr9 113723255 113723542 -4139085 - AluSx SINE Alu -24 288 1 6300 269 29 27 chr9 113723542 113723947 -4138680 - HERVI LTR ERV1 -3264 4521 4119 484 165 47 106 chr9 113723948 113724118 -4138509 - MER51C LTR ERV1 -27 613 454 1598 147 4 19 chr9 113724319 113724584 -4138043 - AluJo SINE Alu -3 309 49 710 164 0 0 chr9 113724610 113724732 -4137895 - MER65C LTR ERV1 -131 330 209 252 108 0 0 chr9 113724787 113724824 -4137803 - MER65C LTR ERV1 -216 245 209 5622 150 14 37 chr9 113724850 113725842 -4136785 + LTR5 LTR ERVK 1 969 0 227 135 0 0 chr9 113725848 113725885 -4136742 - MER65C LTR ERV1 -216 245 209 232 162 0 0 chr9 113725977 113726014 -4136613 - MER65C LTR ERV1 -216 245 209 * 247 135 0 0 chr9 113726009 113726046 -4136581 - MER65C LTR ERV1 -216 245 209 516 161 0 59 chr9 113726190 113726308 -4136319 - MER65C LTR ERV1 -195 266 156 2446 77 3 0 chr9 113726510 113726820 -4135807 + AluY SINE Alu 1 311 0 303 245 155 25 chr9 113726954 113727078 -4135549 + MIR SINE MIR 15 153 -62 2337 98 0 3 chr9 113727467 113727762 -4134865 - AluSx SINE Alu -18 294 1 1817 185 0 3 chr9 113727854 113728156 -4134471 - AluJb SINE Alu 0 312 12 866 171 40 28 chr9 113728419 113728595 -4134032 - MSTB1 LTR MaLR 0 432 255 29049 104 52 42 chr9 113728643 113729172 -4133455 - HUERS-P1 LTR ERV1 -460 5417 4895 2279 98 0 33 chr9 113729172 113729479 -4133148 - AluSq SINE Alu -16 297 1 29049 104 52 42 chr9 113729479 113729814 -4132813 - HUERS-P1 LTR ERV1 -982 4895 4565 2189 133 0 0 chr9 113729814 113730115 -4132512 + AluSq SINE Alu 1 301 -12 29049 104 52 42 chr9 113730115 113731487 -4131140 - HUERS-P1 LTR ERV1 -1312 4565 3208 2286 117 3 0 chr9 113731487 113731786 -4130841 - AluSc SINE Alu -8 301 2 29049 104 52 42 chr9 113731786 113735155 -4127472 - HUERS-P1 LTR ERV1 -2669 3208 1 4693 133 3 13 chr9 113735155 113735853 -4126774 - LTR8 LTR ERV1 0 691 1 2416 222 47 69 chr9 113735853 113736316 -4126311 + L1M4c LINE L1 1395 1867 -4515 2302 102 0 0 chr9 113736316 113736609 -4126018 - AluSc SINE Alu -10 299 7 2416 222 47 69 chr9 113736609 113736652 -4125975 + L1M4c LINE L1 1867 1909 -4473 2208 136 0 0 chr9 113736652 113736960 -4125667 + AluSx SINE Alu 3 310 -2 2416 222 47 69 chr9 113736960 113737237 -4125390 + L1M4c LINE L1 1909 2191 -4191 1091 99 56 0 chr9 113737237 113737398 -4125229 + L1PA8 LINE L1 5997 6166 -6 2416 222 47 69 chr9 113737398 113737492 -4125135 + L1M4c LINE L1 2191 2286 -4096 2532 65 0 3 chr9 113737492 113737802 -4124825 + AluY SINE Alu 1 309 -2 2416 222 47 69 chr9 113737802 113737859 -4124768 + L1M4c LINE L1 2286 2343 -4039 2139 123 3 0 chr9 113737859 113738165 -4124462 - AluSq SINE Alu 0 307 1 1783 63 0 9 chr9 113738165 113738386 -4124241 - AluY SINE Alu -19 292 74 2150 100 41 0 chr9 113738386 113738676 -4123951 - AluSx SINE Alu -9 303 1 2416 222 47 69 chr9 113738676 113739167 -4123460 + L1M4c LINE L1 2341 2841 -3541 1754 184 3 3 chr9 113739167 113739461 -4123166 + AluJo SINE Alu 1 294 -18 2416 222 47 69 chr9 113739461 113739729 -4122898 + L1M4c LINE L1 2841 3137 -3245 2150 144 0 0 chr9 113739729 113740041 -4122586 + AluSx SINE Alu 1 312 0 2416 222 47 69 chr9 113740041 113740200 -4122427 + L1M4c LINE L1 3137 3298 -3084 282 133 117 0 chr9 113740205 113740265 -4122362 + L1M LINE L1 5264 5330 -844 1925 161 3 0 chr9 113740267 113740584 -4122043 + AluSx SINE Alu 1 312 0 787 195 0 0 chr9 113740597 113740725 -4121902 + AluSx SINE Alu 4 131 -182 1495 236 67 116 chr9 113740917 113741616 -4121011 + L1MEc LINE L1 44 699 -5697 5664 76 16 7 chr9 113741616 113742349 -4120278 + SVA Other Other 647 1386 0 1495 236 67 116 chr9 113742349 113742468 -4120159 + L1MEc LINE L1 699 822 -5574 995 119 0 0 chr9 113742471 113742605 -4120022 + AluJb SINE Alu 1 134 -178 1251 128 0 17 chr9 113742699 113742879 -4119748 + AluSg/x SINE Alu 121 297 -15 310 283 129 9 chr9 113743263 113743388 -4119239 - MIR SINE MIR -62 146 15 484 154 88 0 chr9 113743965 113744056 -4118571 + HY3 scRNA scRNA 1 99 -2 441 328 24 56 chr9 113744059 113744309 -4118318 + HAL1 LINE L1 1160 1401 -1106 2154 98 0 4 chr9 113744601 113744877 -4117750 + AluSx SINE Alu 9 283 -29 647 278 92 19 chr9 113746710 113746736 -4115891 - MER69 DNA AcHobo -53 2473 2450 2375 57 3 27 chr9 113746736 113747034 -4115593 + AluY SINE Alu 1 291 -20 647 278 92 19 chr9 113747034 113747324 -4115303 - MER69 DNA AcHobo -76 2450 2134 300 241 48 12 chr9 113747648 113747731 -4114896 - MER69 DNA AcHobo -1866 660 575 304 362 119 5 chr9 113747740 113747958 -4114669 - MER69 DNA AcHobo -606 620 378 432 323 129 23 chr9 113748568 113748871 -4113756 - L1M4 LINE L1 -1062 5084 4750 279 292 42 17 chr9 113748946 113749182 -4113445 - L1MEc LINE L1 -2828 3301 3060 267 79 0 0 chr9 113749194 113749232 -4113395 + (TG)n Simple_repeat Simple_repeat 1 38 0 2053 94 11 0 chr9 113749232 113749507 -4113120 - AluSq SINE Alu -33 280 3 2312 97 6 0 chr9 113749862 113750173 -4112454 + AluSp SINE Alu 1 313 0 321 329 94 12 chr9 113750198 113750368 -4112259 - L1MEc LINE L1 -3589 2540 2357 1996 123 3 0 chr9 113750402 113750702 -4111925 - AluSx SINE Alu -1 311 11 434 303 106 40 chr9 113750998 113751411 -4111216 - L1MEc LINE L1 -860 1630 1215 41286 32 23 2 chr9 113751426 113757450 -4105177 + L1PA3 LINE L1 1 6155 0 517 170 18 0 chr9 113757524 113757636 -4104991 + (TG)n Simple_repeat Simple_repeat 2 115 0 520 271 198 21 chr9 113757701 113758029 -4104598 - L1MEc LINE L1 -5030 1089 704 239 222 0 0 chr9 113758477 113758522 -4104105 + (TG)n Simple_repeat Simple_repeat 2 46 0 1048 155 0 0 chr9 113760361 113760516 -4102111 + AluSx SINE Alu 1 155 -157 1518 102 0 5 chr9 113760532 113760737 -4101890 - AluSg SINE Alu -106 204 1 233 217 174 87 chr9 113760737 113760921 -4101706 + L1MEc LINE L1 1976 2175 -4221 2204 118 0 0 chr9 113760923 113761229 -4101398 + AluSx SINE Alu 1 306 -6 333 281 26 53 chr9 113761339 113761365 -4101262 - L2 LINE L2 0 3272 3247 2208 110 0 7 chr9 113761365 113761675 -4100952 + AluSq SINE Alu 1 308 -5 333 281 26 53 chr9 113761675 113761762 -4100865 - L2 LINE L2 -25 3247 3162 2218 92 10 0 chr9 113762591 113762884 -4099743 + AluSx SINE Alu 1 296 -16 675 135 87 0 chr9 113763217 113763321 -4099306 + FLAM_C SINE Alu 3 115 -28 220 169 39 26 chr9 113763324 113763401 -4099226 + (TA)n Simple_repeat Simple_repeat 1 78 0 967 132 7 0 chr9 113763431 113763575 -4099052 - AluSg/x SINE Alu -35 275 131 2240 97 6 3 chr9 113763575 113763886 -4098741 - AluSx SINE Alu 0 312 1 197 248 114 38 chr9 113763888 113763993 -4098634 + L2 LINE L2 2948 3060 -212 1184 175 52 4 chr9 113764223 113764475 -4098152 + MER74A LTR ERVL 268 531 -27 980 204 0 0 chr9 113764502 113764669 -4097958 + FAM SINE Alu 1 167 -8 844 174 7 0 chr9 113765198 113765342 -4097285 + AluJb SINE Alu 157 301 -11 205 250 24 24 chr9 113765626 113765710 -4096917 + (CAG)n Simple_repeat Simple_repeat 1 84 0 1591 112 4 21 chr9 113765801 113766043 -4096584 + MER1B DNA MER1_type 133 330 -9 1369 205 37 52 chr9 113766191 113766572 -4096055 + MLT1B LTR MaLR 16 390 0 2264 86 7 0 chr9 113766800 113767101 -4095526 + AluSx SINE Alu 1 303 -9 1031 215 89 8 chr9 113767340 113767586 -4095041 + L1M4 LINE L1 4681 4946 -1200 180 0 0 0 chr9 113767611 113767631 -4094996 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 2079 104 3 0 chr9 113767634 113767921 -4094706 - AluSx SINE Alu -24 288 1 239 153 245 20 chr9 113767921 113768019 -4094608 - L1M4 LINE L1 -888 5258 5139 * 1464 194 52 62 chr9 113768015 113768051 -4094576 + L1M4 LINE L1 2561 2596 -3550 2296 91 10 0 chr9 113768051 113768359 -4094268 + AluSp SINE Alu 3 313 0 1464 194 52 62 chr9 113768359 113768534 -4094093 + L1M4 LINE L1 2596 2771 -3375 1679 147 10 30 chr9 113768534 113768834 -4093793 - AluJo SINE Alu -14 298 5 1464 194 52 62 chr9 113768834 113769086 -4093541 + L1M4 LINE L1 2771 3020 -3126 353 207 124 25 chr9 113769293 113769414 -4093213 - MER65B LTR ERV1 -398 133 1 181 350 94 8 chr9 113769479 113769596 -4093031 + L2 LINE L2 3146 3272 0 534 304 206 10 chr9 113769957 113770212 -4092415 - L1M4 LINE L1 -2142 4004 3800 8115 67 6 6 chr9 113770212 113771219 -4091408 - LTR13 LTR ERVK 0 1007 1 534 304 206 10 chr9 113771219 113771454 -4091173 - L1M4 LINE L1 -2346 3800 3418 1797 130 35 3 chr9 113771631 113771916 -4090711 - AluSx SINE Alu -18 294 1 345 231 34 0 chr9 113771919 113772036 -4090591 - L1M4 LINE L1 -3171 2975 2855 362 126 6 0 chr9 113772036 113772102 -4090525 + Alu SINE Alu 238 295 -5 230 256 102 51 chr9 113772110 113772247 -4090380 - L1M4 LINE L1 -3327 2819 2676 240 308 215 0 chr9 113776139 113776311 -4086316 + L1ME LINE L1 5616 5824 -297 1928 119 0 4 chr9 113776351 113776629 -4085998 - AluSc SINE Alu -17 292 16 1474 69 0 51 chr9 113777076 113777292 -4085335 + AluY SINE Alu 107 311 0 21 0 0 0 chr9 113777674 113777695 -4084932 + GC_rich Low_complexity Low_complexity 1 21 0 2273 61 0 0 chr9 113778212 113778492 -4084135 - AluSx SINE Alu -32 280 1 1620 141 28 18 chr9 113778807 113779090 -4083537 + AluJb SINE Alu 1 286 -26 529 143 0 22 chr9 113779120 113779211 -4083416 - HY4 scRNA scRNA -4 89 1 604 231 100 73 chr9 113779265 113779525 -4083102 + L2 LINE L2 2320 2586 -728 1709 127 45 21 chr9 113779527 113779681 -4082946 - AluSp SINE Alu -15 298 132 2436 71 0 0 chr9 113779681 113779992 -4082635 - AluSp SINE Alu -2 311 1 1709 127 45 21 chr9 113779992 113780128 -4082499 - AluSp SINE Alu -181 132 1 839 142 8 15 chr9 113780129 113780263 -4082364 - AluSq/x SINE Alu -178 134 2 525 312 161 11 chr9 113781092 113781371 -4081256 - L2 LINE L2 -1373 1941 1621 230 330 76 0 chr9 113781549 113781667 -4080960 - MIR3 SINE MIR -70 138 12 254 331 49 55 chr9 113781925 113782088 -4080539 + MIR SINE MIR 29 190 -72 180 0 0 0 chr9 113783937 113783957 -4078670 + (CAGGG)n Simple_repeat Simple_repeat 1 20 0 200 291 70 0 chr9 113784742 113784828 -4077799 + MIR3 SINE MIR 111 202 -6 220 316 40 0 chr9 113784838 113784914 -4077713 + L2 LINE L2 3159 3237 -35 326 248 80 32 chr9 113785765 113785890 -4076737 + MIR SINE MIR 62 192 -70 187 342 25 0 chr9 113787042 113787121 -4075506 - MIR SINE MIR -12 250 170 727 290 37 5 chr9 113787231 113787445 -4075182 + MIR SINE MIR 36 256 -6 217 308 246 8 chr9 113787631 113787761 -4074866 - MIR SINE MIR -29 233 73 2311 61 7 0 chr9 113788624 113788918 -4073709 + AluSx SINE Alu 3 298 -14 272 178 14 0 chr9 113789242 113789315 -4073312 + C-rich Low_complexity Low_complexity 3 76 0 884 153 179 0 chr9 113792865 113793055 -4069572 - AluSg/x SINE Alu -23 289 66 211 275 83 58 chr9 113794540 113794660 -4067967 + MER5A DNA MER1_type 31 153 -36 341 264 229 0 chr9 113795463 113795607 -4067020 - Charlie8 DNA MER1_type -2213 204 28 191 278 56 42 chr9 113796469 113796541 -4066086 + L2 LINE L2 3200 3272 0 2102 85 20 3 chr9 113796685 113796979 -4065648 + AluSp SINE Alu 1 299 -14 26 0 0 0 chr9 113797199 113797225 -4065402 + AT_rich Low_complexity Low_complexity 1 26 0 199 274 170 15 chr9 113797338 113797473 -4065154 + MIR SINE MIR 47 202 -60 249 174 8 74 chr9 113797741 113797862 -4064765 + C-rich Low_complexity Low_complexity 6 118 0 316 134 36 45 chr9 113798123 113798235 -4064392 + G-rich Low_complexity Low_complexity 4 114 0 268 293 27 0 chr9 113798943 113799018 -4063609 + MER5B DNA MER1_type 5 81 -97 260 304 118 0 chr9 113800028 113800130 -4062497 - L2 LINE L2 -1362 1952 1839 198 279 16 0 chr9 113800622 113800683 -4061944 - L2 LINE L2 -2492 822 761 2388 53 3 7 chr9 113805803 113806102 -4056525 + AluY SINE Alu 2 299 -12 274 386 39 0 chr9 113806684 113806811 -4055816 + MIR3 SINE MIR 49 180 -28 1158 132 142 15 chr9 113806868 113807072 -4055555 + MER30 DNA MER1_type 1 230 0 1221 146 117 9 chr9 113807125 113807338 -4055289 - MER46A DNA MER2_type 0 236 1 221 176 59 0 chr9 113809234 113809285 -4053342 - MIR3 SINE MIR -6 202 149 291 304 64 0 chr9 113809285 113809410 -4053217 - MER20 DNA MER1_type -4 215 83 220 305 67 9 chr9 113809447 113809552 -4053075 - MIR3 SINE MIR -49 159 49 205 353 27 76 chr9 113810699 113810883 -4051744 + MIR3 SINE MIR 11 185 -23 1941 117 13 26 chr9 113814710 113815018 -4047609 + AluSx SINE Alu 1 304 -8 2226 76 36 7 chr9 113815029 113815332 -4047295 + AluSq SINE Alu 1 312 -1 2051 107 3 30 chr9 113815664 113815995 -4046632 + AluSp SINE Alu 1 323 0 183 42 0 0 chr9 113817387 113817411 -4045216 + (CTCG)n Simple_repeat Simple_repeat 2 25 0 30 0 0 0 chr9 113817522 113817552 -4045075 + GC_rich Low_complexity Low_complexity 1 30 0 2263 74 10 3 chr9 113818776 113819074 -4043553 + AluSp SINE Alu 1 300 -13 3557 108 52 2 chr9 113819075 113819576 -4043051 - MER1A DNA MER1_type -1 526 1 435 347 24 18 chr9 113819822 113819989 -4042638 + MIR SINE MIR 15 182 -80 276 318 219 10 chr9 113820740 113820932 -4041695 - MIR SINE MIR -8 254 23 219 196 68 23 chr9 113820945 113821039 -4041588 - MIR SINE MIR -67 141 50 2084 92 7 33 chr9 113821432 113821737 -4040890 - AluSx SINE Alu -15 297 1 2007 125 3 14 chr9 113821764 113822045 -4040582 + AluSx SINE Alu 1 280 -32 198 0 0 0 chr9 113822045 113822067 -4040560 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 2007 125 3 14 chr9 113822067 113822081 -4040546 + AluSx SINE Alu 280 293 -19 241 270 59 95 chr9 113822308 113822420 -4040207 - L1ME LINE L1 -334 5787 5673 274 0 73 0 chr9 113822420 113822461 -4040166 + (TTTTG)n Simple_repeat Simple_repeat 3 46 0 241 270 59 95 chr9 113822461 113822524 -4040103 - L1ME LINE L1 -448 5673 5609 2209 79 9 41 chr9 113822524 113822841 -4039786 - AluSp SINE Alu -6 307 1 2328 80 3 0 chr9 113822843 113823142 -4039485 - AluSp SINE Alu -13 300 1 241 270 59 95 chr9 113823142 113823184 -4039443 - L1ME LINE L1 -513 5608 5574 749 150 42 0 chr9 113823834 113824001 -4038626 + (ATGGTG)n Simple_repeat Simple_repeat 1 174 0 262 136 0 23 chr9 113824243 113824287 -4038340 + (ATG)n Simple_repeat Simple_repeat 3 45 0 742 209 4 8 chr9 113824287 113824529 -4038098 + (TGG)n Simple_repeat Simple_repeat 1 240 0 2045 128 0 10 chr9 113824872 113825170 -4037457 + AluSx SINE Alu 1 295 -17 23 54 0 0 chr9 113825208 113825245 -4037382 + AT_rich Low_complexity Low_complexity 1 37 0 738 148 23 16 chr9 113825296 113825424 -4037203 - FLAM_C SINE Alu 0 133 5 254 333 147 7 chr9 113826043 113826193 -4036434 - MIR SINE MIR -68 194 24 413 329 44 36 chr9 113826554 113826638 -4035989 - MIR SINE MIR -21 241 159 2202 95 3 3 chr9 113826638 113826934 -4035693 - AluSx SINE Alu -16 296 1 413 329 44 36 chr9 113826934 113827074 -4035553 - MIR SINE MIR -103 159 15 230 342 88 0 chr9 113827276 113827390 -4035237 - MIR SINE MIR -111 151 28 279 283 79 57 chr9 113827738 113828003 -4034624 - L2 LINE L2 -179 3093 2823 980 274 214 20 chr9 113828415 113828962 -4033665 - L1ME3 LINE L1 -29 6133 5481 2030 108 7 0 chr9 113828962 113829262 -4033365 - AluSx SINE Alu 0 302 1 465 306 52 0 chr9 113829264 113829457 -4033170 - L1ME3 LINE L1 -948 5198 4996 818 148 8 0 chr9 113830771 113830899 -4031728 + FRAM SINE Alu 1 128 -48 450 0 0 0 chr9 113830908 113830958 -4031669 + (CA)n Simple_repeat Simple_repeat 2 51 0 5857 31 30 14 chr9 113831857 113832567 -4030060 + SVA Other Other 665 1385 -1 2248 58 41 10 chr9 113832782 113833074 -4029553 - AluY SINE Alu -10 301 1 1140 124 0 0 chr9 113833104 113833173 -4029454 + (TGGA)n Simple_repeat Simple_repeat 1 247 0 1140 124 0 0 chr9 113833173 113833351 -4029276 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 382 238 7 33 chr9 113833419 113833570 -4029057 + GA-rich Low_complexity Low_complexity 4 150 0 678 219 0 0 chr9 113833602 113833829 -4028798 + (TGGG)n Simple_repeat Simple_repeat 1 227 0 247 224 79 0 chr9 113836160 113836236 -4026391 - ORSL DNA AcHobo -26 249 168 1912 122 3 25 chr9 113836316 113836635 -4025992 + AluJb SINE Alu 1 312 0 2052 119 0 25 chr9 113836639 113836958 -4025669 + AluSq SINE Alu 1 311 -2 422 159 68 0 chr9 113836990 113837078 -4025549 - ORSL DNA AcHobo -158 117 24 276 371 0 0 chr9 113837965 113838070 -4024557 + MIR SINE MIR 117 221 -41 326 305 76 0 chr9 113838488 113838606 -4024021 - L1ME LINE L1 -361 5760 5634 1665 173 33 10 chr9 113838667 113838968 -4023659 + AluJo SINE Alu 1 308 -4 2146 111 0 3 chr9 113839008 113839328 -4023299 - AluSx SINE Alu 0 312 1 297 128 0 0 chr9 113839414 113839461 -4023166 + (TCCA)n Simple_repeat Simple_repeat 3 49 0 2149 102 0 13 chr9 113839773 113840076 -4022551 + AluSx SINE Alu 1 299 -13 185 309 228 24 chr9 113840271 113840394 -4022233 + MIR SINE MIR 28 175 -87 377 344 58 0 chr9 113840987 113841141 -4021486 + MIR3 SINE MIR 10 172 -36 2125 85 14 7 chr9 113841329 113841623 -4021004 - AluSg SINE Alu -14 296 1 1621 201 3 16 chr9 113848399 113848708 -4013919 + AluJb SINE Alu 1 305 -7 450 0 0 0 chr9 113849161 113849211 -4013416 + (TG)n Simple_repeat Simple_repeat 1 50 0 2047 88 0 4 chr9 113849218 113849490 -4013137 - AluSx SINE Alu -34 278 8 1711 180 7 7 chr9 113849789 113850094 -4012533 - AluJo SINE Alu -7 305 1 2699 164 51 10 chr9 113850382 113851034 -4011593 - MER54B LTR ERVL -80 713 1 300 324 102 0 chr9 113851551 113851659 -4010968 + MER5C DNA MER1_type 37 155 -169 2225 101 3 0 chr9 113851879 113852176 -4010451 + AluSp SINE Alu 1 298 -15 918 111 0 37 chr9 113852176 113852300 -4010327 - FLAM_A SINE Alu -181 121 1 2004 126 0 13 chr9 113853337 113853639 -4008988 - AluSx SINE Alu -14 298 1 433 279 82 11 chr9 113853646 113853836 -4008791 - HAL1b LINE L1 0 1348 1158 255 278 157 61 chr9 113853909 113854139 -4008488 + L2 LINE L2 3012 3263 -50 814 191 30 12 chr9 113854307 113854475 -4008152 - AluJ SINE Alu -6 306 136 264 351 2 11 chr9 113854561 113854669 -4007958 - MIR SINE MIR -87 121 14 524 174 0 0 chr9 113856156 113856242 -4006385 + FLAM_C SINE Alu 33 118 -25 1805 185 55 3 chr9 113856242 113856605 -4006022 - MSTB LTR MaLR -4 422 41 803 149 0 0 chr9 113856622 113856743 -4005884 - AluJ SINE Alu -180 132 12 307 73 164 0 chr9 113856743 113856798 -4005829 + AluJo/FRAM SINE Alu 174 237 -65 436 298 181 23 chr9 113856928 113857143 -4005484 + MIR SINE MIR 4 252 -10 2050 91 0 23 chr9 113857253 113857562 -4005065 - AluSx SINE Alu -10 302 1 1925 157 75 34 chr9 113858710 113859151 -4003476 - LTR2B LTR ERV1 0 490 32 1570 110 5 0 chr9 113859169 113859388 -4003239 - AluSx SINE Alu -92 220 1 1007 295 106 41 chr9 113859395 113859951 -4002676 - L2 LINE L2 -810 2504 1913 2092 98 0 62 chr9 113859982 113860155 -4002472 - AluSx SINE Alu -7 305 160 2233 87 3 3 chr9 113860155 113860453 -4002174 - AluSp SINE Alu -15 298 1 2092 98 0 62 chr9 113860453 113860604 -4002023 - AluSx SINE Alu -152 160 1 1636 196 42 33 chr9 113860623 113861051 -4001576 - MER101 LTR ERV1 -32 442 11 215 297 99 64 chr9 113861070 113861237 -4001390 - L2 LINE L2 -1458 1856 1679 2200 114 0 0 chr9 113861237 113861544 -4001083 + AluSx SINE Alu 3 309 -3 215 297 99 64 chr9 113861544 113861578 -4001049 - L2 LINE L2 -1635 1679 1648 759 297 24 47 chr9 113861602 113861898 -4000729 + L2 LINE L2 3025 3313 0 197 200 0 113 chr9 113861877 113861957 -4000670 - L2 LINE L2 -1638 1676 1606 * 321 344 12 6 chr9 113863056 113863198 -3999429 + CT-rich Low_complexity Low_complexity 2 147 -18 896 150 0 0 chr9 113863198 113863331 -3999296 - FLAM_C SINE Alu 0 133 1 321 344 12 6 chr9 113863331 113863351 -3999276 + CT-rich Low_complexity Low_complexity 147 165 0 1202 83 0 18 chr9 113865312 113865480 -3997147 + AluSq SINE Alu 1 165 -148 276 304 168 21 chr9 113865981 113866172 -3996455 + MIR SINE MIR 8 226 -36 265 277 53 58 chr9 113866808 113866996 -3995631 - L1ME4a LINE L1 -1 6120 5934 2296 96 3 0 chr9 113867072 113867373 -3995254 - AluSp SINE Alu 0 313 12 2426 174 12 58 chr9 113867850 113868351 -3994276 - MER66A LTR ERV1 0 478 1 206 62 31 0 chr9 113868849 113868881 -3993746 + (CCCCCG)n Simple_repeat Simple_repeat 4 36 0 21 0 0 0 chr9 113868990 113869011 -3993616 + GC_rich Low_complexity Low_complexity 1 21 0 290 288 61 25 chr9 113869365 113869617 -3993010 + (CCCCG)n Simple_repeat Simple_repeat 1 261 0 234 333 22 28 chr9 113869657 113869923 -3992704 + C-rich Low_complexity Low_complexity 1 264 0 398 184 37 18 chr9 113870542 113870651 -3991976 + MER45A DNA AcHobo 68 178 0 242 245 102 31 chr9 113870723 113870821 -3991806 - L2 LINE L2 -198 3074 2970 452 157 22 11 chr9 113870859 113870948 -3991679 + ORSL DNA AcHobo 1 90 -185 1875 106 103 0 chr9 113870996 113871278 -3991349 - AluY SINE Alu 0 311 1 1738 162 3 14 chr9 113871281 113871577 -3991050 - AluJo SINE Alu -11 301 9 238 71 0 241 chr9 113871593 113871642 -3990985 + ORSL DNA AcHobo 120 179 -96 2172 105 7 7 chr9 113871642 113871948 -3990679 - AluSx SINE Alu -6 306 1 238 71 0 241 chr9 113871948 113871969 -3990658 + ORSL DNA AcHobo 179 203 -72 2025 100 0 35 chr9 113871969 113872288 -3990339 - AluY SINE Alu -3 308 1 238 71 0 241 chr9 113872288 113872316 -3990311 + ORSL DNA AcHobo 203 193 -82 2104 89 6 25 chr9 113872316 113872631 -3989996 + AluSp SINE Alu 1 309 -4 238 71 0 241 chr9 113872631 113872642 -3989985 + ORSL DNA AcHobo 192 204 -71 2260 109 0 3 chr9 113874167 113874480 -3988147 + AluSx SINE Alu 1 312 0 2145 92 13 10 chr9 113874653 113874956 -3987671 - AluY SINE Alu -7 304 1 2371 236 26 68 chr9 113874970 113875536 -3987091 - L1MB5 LINE L1 -1 6173 5585 2187 97 3 7 chr9 113875536 113875844 -3986783 - AluSx SINE Alu -5 307 1 2371 236 26 68 chr9 113875844 113875873 -3986754 - L1MB5 LINE L1 -589 5585 5556 2313 83 0 13 chr9 113875873 113876187 -3986440 - AluY SINE Alu 0 311 2 2371 236 26 68 chr9 113876187 113876316 -3986311 - L1MB5 LINE L1 -618 5556 5478 920 114 8 0 chr9 113876341 113876473 -3986154 - AluSq/x SINE Alu -179 133 1 241 211 19 0 chr9 113877013 113877065 -3985562 - MIR SINE MIR -97 165 113 362 285 35 0 chr9 113877495 113877624 -3985003 + MIR SINE MIR 103 235 -27 1971 130 3 7 chr9 113877625 113877917 -3984710 - AluSx SINE Alu -21 291 1 216 187 180 10 chr9 113878378 113878494 -3984133 + MIR SINE MIR 7 150 -58 207 232 36 0 chr9 113878519 113878575 -3984052 - MIR3 SINE MIR -8 200 143 1900 115 10 20 chr9 113878999 113879303 -3983324 + AluSx SINE Alu 1 301 -11 265 280 182 15 chr9 113879517 113879649 -3982978 - L3 LINE CR1 -22 1555 1402 518 324 109 7 chr9 113879923 113880216 -3982411 - MER77 LTR ERV1 -6 599 277 285 267 0 0 chr9 113881001 113881061 -3981566 - L2 LINE L2 0 3272 3213 192 311 44 11 chr9 113881795 113881885 -3980742 - MER5A DNA MER1_type -31 158 66 * 210 384 12 0 chr9 113881810 113881896 -3980731 + MER5A DNA MER1_type 60 146 -43 687 126 13 133 chr9 113882501 113882652 -3979975 - FLAM_C SINE Alu 0 133 1 218 325 6 30 chr9 113883219 113883358 -3979269 - MIR SINE MIR -29 233 100 182 329 27 0 chr9 113884140 113884213 -3978414 + MIR SINE MIR 73 147 -115 349 241 46 19 chr9 113884352 113884460 -3978167 + MIR3 SINE MIR 50 160 -48 621 190 95 17 chr9 113884464 113884643 -3977984 - MER117 DNA MER1_type -4 193 1 1150 159 245 16 chr9 113884760 113885005 -3977622 - AluJo SINE Alu 0 302 2 3809 179 22 22 chr9 113886604 113887293 -3975334 - L1MB3 LINE L1 -1 6182 5491 2076 134 7 0 chr9 113887293 113887599 -3975028 - AluSx SINE Alu -4 308 1 3809 179 22 22 chr9 113887599 113887643 -3974984 - L1MB3 LINE L1 -691 5492 5449 1322 187 90 24 chr9 113887727 113888016 -3974611 - AluJo SINE Alu 0 312 5 2021 118 0 25 chr9 113888029 113888344 -3974283 - AluSx SINE Alu 0 312 6 2138 78 37 7 chr9 113888440 113888735 -3973892 - AluSg SINE Alu -6 304 1 635 251 133 10 chr9 113888769 113888964 -3973663 - MIR SINE MIR 0 262 44 405 312 33 23 chr9 113889700 113889915 -3972712 - L2 LINE L2 -20 3293 3077 782 206 0 0 chr9 113890477 113890608 -3972019 + FLAM_A SINE Alu 1 131 -2 2063 104 0 49 chr9 113890611 113890748 -3971879 + AluSx SINE Alu 1 143 -169 2183 106 13 0 chr9 113890748 113891051 -3971576 + AluSp SINE Alu 1 307 -6 2063 104 0 49 chr9 113891051 113891239 -3971388 + AluSx SINE Alu 143 310 -2 1998 139 27 0 chr9 113891719 113892020 -3970607 - AluSq SINE Alu -4 309 1 1922 145 0 13 chr9 113892081 113892384 -3970243 + AluJb SINE Alu 10 308 -4 470 353 83 36 chr9 113892390 113892572 -3970055 - L1M4 LINE L1 -1129 5017 4845 1734 116 12 0 chr9 113892572 113892823 -3969804 - AluSx SINE Alu -4 308 55 470 353 83 36 chr9 113892823 113893000 -3969627 - L1M4 LINE L1 -1301 4845 4641 811 124 9 0 chr9 113893150 113893263 -3969364 - FLAM_A SINE Alu -18 124 11 371 283 64 64 chr9 113893268 113893519 -3969108 + L2 LINE L2 2851 3101 -212 885 39 0 0 chr9 113893520 113893622 -3969005 + AluJ SINE Alu 34 135 -177 2027 80 0 8 chr9 113893622 113893885 -3968742 + AluY SINE Alu 1 261 -50 573 111 12 0 chr9 113893885 113893966 -3968661 + AluSg/x SINE Alu 219 300 -12 1251 131 0 25 chr9 113893966 113894165 -3968462 + AluJ SINE Alu 118 311 -1 185 315 56 34 chr9 113894242 113894331 -3968296 + L2 LINE L2 3195 3285 -28 181 292 46 15 chr9 113894365 113894430 -3968197 + MIR SINE MIR 3 69 -193 327 312 116 6 chr9 113895524 113895723 -3966904 + MIR SINE MIR 10 229 -33 475 204 14 88 chr9 113896857 113897004 -3965623 - MIR SINE MIR -112 150 15 485 384 31 8 chr9 113898077 113898332 -3964295 - MIR SINE MIR 0 262 2 2186 100 0 0 chr9 113898798 113899089 -3963538 + AluSx SINE Alu 12 302 -10 380 307 153 0 chr9 113899276 113899452 -3963175 + MIR SINE MIR 60 262 0 207 100 0 0 chr9 113900754 113900784 -3961843 + (CCCCG)n Simple_repeat Simple_repeat 1 30 0 375 45 45 0 chr9 113900979 113901045 -3961582 + (CGGGGG)n Simple_repeat Simple_repeat 4 72 0 195 303 38 68 chr9 113903451 113903583 -3959044 - MIR SINE MIR -58 150 23 228 272 78 48 chr9 113903829 113903932 -3958695 + MIR SINE MIR 32 137 -71 318 256 32 72 chr9 113907020 113907145 -3955482 - L1ME4a LINE L1 -190 5931 5812 289 340 10 16 chr9 113907150 113907344 -3955283 - L1ME4a LINE L1 -370 5751 5559 235 326 77 0 chr9 113908895 113909076 -3953551 - MER117 DNA MER1_type 0 197 3 372 77 0 0 chr9 113910872 113910924 -3951703 + (TG)n Simple_repeat Simple_repeat 1 52 0 277 276 60 52 chr9 113911572 113911688 -3950939 - MIR3 SINE MIR -90 118 2 1987 110 16 36 chr9 113911913 113912222 -3950405 - AluSq SINE Alu -10 303 1 313 306 104 47 chr9 113915102 113915295 -3947332 - MIR SINE MIR -40 222 19 655 173 47 40 chr9 113915326 113915476 -3947151 - FRAM SINE Alu 0 40 1 317 263 51 59 chr9 113916425 113916543 -3946084 + L2 LINE L2 2956 3072 -200 180 343 19 28 chr9 113916829 113916937 -3945690 - MIR SINE MIR -84 124 18 266 308 66 11 chr9 113917247 113917338 -3945289 + MIR SINE MIR 49 144 -118 527 306 68 24 chr9 113918397 113918603 -3944024 + MIR SINE MIR 48 262 0 232 311 26 53 chr9 113919464 113919615 -3943012 + MIR3 SINE MIR 33 179 -29 225 211 0 0 chr9 113921055 113921112 -3941515 + (TA)n Simple_repeat Simple_repeat 2 58 0 2303 84 0 3 chr9 113921112 113921410 -3941217 - AluSg SINE Alu -13 297 1 1635 185 13 3 chr9 113921456 113921758 -3940869 + AluJo SINE Alu 1 305 -7 765 234 69 71 chr9 113921763 113921879 -3940748 - L1ME1 LINE L1 -5 6161 6046 2243 107 0 3 chr9 113921879 113922189 -3940438 - AluSx SINE Alu -3 309 1 765 234 69 71 chr9 113922189 113922264 -3940363 - L1ME1 LINE L1 -120 6046 5972 2206 60 0 23 chr9 113922264 113922563 -3940064 - AluY SINE Alu -19 292 1 765 234 69 71 chr9 113922563 113922763 -3939864 - L1ME1 LINE L1 -194 5972 5770 2333 60 3 7 chr9 113922820 113923121 -3939506 - AluY SINE Alu -11 300 1 1889 148 8 34 chr9 113923251 113923571 -3939056 - LTR26 LTR ERV1 0 603 293 2219 116 0 0 chr9 113923571 113923872 -3938755 - AluSg SINE Alu -9 301 1 1889 148 8 34 chr9 113923872 113923930 -3938697 - LTR26 LTR ERV1 -310 293 235 1442 126 5 5 chr9 113923939 113924153 -3938474 + AluSq SINE Alu 88 301 -12 1285 127 31 26 chr9 113924160 113924388 -3938239 - LTR26 LTR ERV1 -374 229 1 2211 236 75 8 chr9 113924389 113925020 -3937607 - MER39 LTR ERV1 -34 673 1 1085 83 0 0 chr9 113925056 113925189 -3937438 + AluSp SINE Alu 1 133 -180 23 0 0 0 chr9 113925189 113925212 -3937415 + AT_rich Low_complexity Low_complexity 1 23 0 191 269 39 0 chr9 113926065 113926117 -3936510 + MIR SINE MIR 113 166 -96 187 273 146 0 chr9 113926351 113926406 -3936221 - MIR SINE MIR -60 148 86 260 354 21 9 chr9 113927169 113927313 -3935314 + MIR SINE MIR 37 182 -62 2305 79 7 3 chr9 113927843 113928147 -3934480 + AluSp SINE Alu 1 305 -8 2055 116 0 19 chr9 113929335 113929653 -3932974 + AluSx SINE Alu 1 312 0 332 237 8 0 chr9 113930589 113930720 -3931907 + (TG)n Simple_repeat Simple_repeat 2 133 0 215 274 63 63 chr9 113930875 113930970 -3931657 + MIR SINE MIR 17 111 -151 200 140 0 53 chr9 113931617 113931674 -3930953 + (GGA)n Simple_repeat Simple_repeat 3 56 0 677 173 6 17 chr9 113931683 113931862 -3930765 + GA-rich Low_complexity Low_complexity 1 177 0 618 182 6 11 chr9 113931892 113932073 -3930554 + GA-rich Low_complexity Low_complexity 1 180 0 219 262 214 0 chr9 113932680 113932764 -3929863 + MIR SINE MIR 48 149 -59 181 268 56 42 chr9 113933815 113933886 -3928741 - MIR3 SINE MIR -53 155 84 231 282 0 60 chr9 113934922 113935071 -3927556 + (CAGGG)n Simple_repeat Simple_repeat 4 143 0 207 273 45 53 chr9 113935085 113935217 -3927410 - L2 LINE L2 -157 3115 2985 389 226 6 17 chr9 113936364 113936545 -3926082 + (TG)n Simple_repeat Simple_repeat 1 179 0 557 181 12 16 chr9 113936616 113936869 -3925758 + (TG)n Simple_repeat Simple_repeat 1 251 0 465 201 5 21 chr9 113936886 113937333 -3925294 + (TG)n Simple_repeat Simple_repeat 1 439 0 666 343 5 14 chr9 113938563 113938776 -3923851 + MIR SINE MIR 9 219 -43 25 31 0 0 chr9 113938966 113938998 -3923629 + AT_rich Low_complexity Low_complexity 1 32 0 260 303 89 52 chr9 113939054 113939320 -3923307 - L2 LINE L2 -51 3221 2945 276 30 0 0 chr9 113939320 113939353 -3923274 + (TG)n Simple_repeat Simple_repeat 1 33 0 441 337 11 22 chr9 113939364 113939545 -3923082 + (CGTG)n Simple_repeat Simple_repeat 1 179 0 * 491 347 0 3 chr9 113939450 113939767 -3922860 + (TG)n Simple_repeat Simple_repeat 1 315 0 194 329 141 0 chr9 113940844 113940929 -3921698 + MIR SINE MIR 36 132 -130 187 364 0 15 chr9 113941133 113941199 -3921428 + L2 LINE L2 3180 3244 -69 1337 174 72 21 chr9 113941204 113941537 -3921090 + THE1C LTR MaLR 1 350 -25 180 0 0 0 chr9 113941537 113941557 -3921070 + (T)n Simple_repeat Simple_repeat 1 20 0 1790 96 0 0 chr9 113941575 113941805 -3920822 - AluSc SINE Alu -79 230 1 219 216 136 23 chr9 113941810 113941898 -3920729 + MIR SINE MIR 153 250 -12 297 0 0 0 chr9 113941899 113941932 -3920695 + (TGGA)n Simple_repeat Simple_repeat 1 33 0 381 346 68 0 chr9 113941958 113942091 -3920536 + MIR SINE MIR 4 145 -117 398 308 67 29 chr9 113942097 113942305 -3920322 + L1MEd LINE L1 300 515 -5901 1142 317 71 35 chr9 113942719 113943903 -3918724 + L1MEd LINE L1 565 1677 -4751 442 289 152 64 chr9 113943917 113944091 -3918536 + L1MEd LINE L1 1605 1762 -4830 1803 161 0 17 chr9 113944091 113944389 -3918238 - AluJo SINE Alu -19 293 1 442 289 152 64 chr9 113944389 113944566 -3918061 + L1MEd LINE L1 1762 2102 -4490 847 246 160 7 chr9 113944736 113945029 -3917598 - L1M4 LINE L1 -919 5227 4890 2072 143 0 9 chr9 113945049 113945364 -3917263 - AluJo SINE Alu 0 312 1 244 276 76 9 chr9 113945366 113945471 -3917156 + L1MEd LINE L1 2815 2926 -3500 26 44 0 44 chr9 113945763 113945787 -3916840 + AT_rich Low_complexity Low_complexity 1 24 -19 2072 100 3 7 chr9 113945787 113946076 -3916551 - AluSq SINE Alu -25 288 1 26 44 0 44 chr9 113946076 113946096 -3916531 + AT_rich Low_complexity Low_complexity 24 43 0 483 149 0 0 chr9 113946096 113946170 -3916457 - AluJo SINE Alu -176 136 63 242 351 72 9 chr9 113947772 113947883 -3914744 - L2 LINE L2 0 3272 3155 192 319 53 26 chr9 113948621 113948734 -3913893 + L2 LINE L2 3136 3251 -21 2125 94 17 10 chr9 113949520 113949817 -3912810 + AluSg SINE Alu 1 299 -11 393 230 221 29 chr9 113949895 113950080 -3912547 - MIR SINE MIR -38 224 3 196 333 28 0 chr9 113950164 113950236 -3912391 - MIR SINE MIR -111 151 78 442 250 17 94 chr9 113951172 113951352 -3911275 - MER53 DNA DNA 0 189 24 1052 68 0 0 chr9 113951382 113951514 -3911113 - AluY SINE Alu -179 132 1 252 164 27 14 chr9 113952660 113952733 -3909894 + (TG)n Simple_repeat Simple_repeat 2 75 0 467 215 41 0 chr9 113952745 113952917 -3909710 + (TG)n Simple_repeat Simple_repeat 1 179 0 292 224 59 0 chr9 113953070 113953155 -3909472 + (TG)n Simple_repeat Simple_repeat 1 90 0 267 231 39 8 chr9 113953166 113953296 -3909331 + (TG)n Simple_repeat Simple_repeat 1 134 0 370 213 50 0 chr9 113953358 113953518 -3909109 + (TG)n Simple_repeat Simple_repeat 1 168 0 500 230 0 7 chr9 113955538 113955690 -3906937 + CT-rich Low_complexity Low_complexity 2 152 0 326 299 119 0 chr9 113957054 113957188 -3905439 - MER46C DNA MER2_type -188 150 1 2009 109 0 20 chr9 113957912 113958214 -3904413 + AluSq SINE Alu 1 296 -17 183 349 71 24 chr9 113958218 113958344 -3904283 + MIR SINE MIR 54 185 -77 209 204 0 20 chr9 113958909 113958958 -3903669 + L2 LINE L2 3017 3064 -208 246 348 43 55 chr9 113959058 113959222 -3903405 - MIR SINE MIR -35 227 66 1538 181 29 4 chr9 113959833 113960114 -3902513 + AluJo SINE Alu 1 288 -24 462 287 44 33 chr9 113960924 113961105 -3901522 + MIR SINE MIR 69 251 -11 586 229 71 12 chr9 113961391 113961561 -3901066 - MER5A DNA MER1_type -5 184 5 959 173 0 6 chr9 113961982 113962138 -3900489 - AluSx SINE Alu -157 155 1 239 222 0 0 chr9 113963975 113964020 -3898607 + (CA)n Simple_repeat Simple_repeat 2 46 0 572 301 155 37 chr9 113964332 113964890 -3897737 + L1MEd LINE L1 1167 1790 -1215 381 198 0 0 chr9 113964892 113964973 -3897654 + (CA)n Simple_repeat Simple_repeat 1 81 0 361 326 91 38 chr9 113965018 113965047 -3897580 + L1M4 LINE L1 4807 4833 -1313 896 26 0 26 chr9 113965047 113965160 -3897467 - L1PA3 LINE L1 0 6155 6046 361 326 91 38 chr9 113965160 113965394 -3897233 + L1M4 LINE L1 4833 5084 -1062 258 362 119 5 chr9 113966004 113966222 -3896405 + MER69 DNA AcHobo 378 620 -606 274 250 26 13 chr9 113966231 113966307 -3896320 + MER69 DNA AcHobo 575 651 -1875 623 287 88 16 chr9 113966638 113966928 -3895699 + MER69 DNA AcHobo 2134 2450 -76 2273 57 3 27 chr9 113966928 113967226 -3895401 - AluY SINE Alu -20 291 1 623 287 88 16 chr9 113967226 113967252 -3895375 + MER69 DNA AcHobo 2450 2473 -53 2081 94 0 4 chr9 113969084 113969360 -3893267 - AluSx SINE Alu -29 283 9 500 348 20 52 chr9 113969652 113969902 -3892725 - HAL1 LINE L1 -1106 1401 1160 500 154 88 0 chr9 113969905 113969996 -3892631 - HY3 scRNA scRNA -2 99 1 329 283 129 9 chr9 113970573 113970698 -3891929 + MIR SINE MIR 15 153 -62 1200 141 0 11 chr9 113971078 113971262 -3891365 - AluSq SINE Alu -11 302 121 306 268 14 0 chr9 113971275 113971346 -3891281 - L1MEc LINE L1 -5519 877 806 950 119 0 0 chr9 113971356 113971490 -3891137 - AluJb SINE Alu -178 134 1 1447 230 67 115 chr9 113971493 113971608 -3891019 - L1MEc LINE L1 -5574 822 703 5104 62 9 6 chr9 113971608 113972253 -3890374 - SVA Other Other 0 1386 740 1447 230 67 115 chr9 113972253 113972955 -3889672 - L1MEc LINE L1 -5693 703 44 793 188 0 0 chr9 113973147 113973275 -3889352 - AluSq SINE Alu -182 131 4 1907 151 3 0 chr9 113973288 113973605 -3889022 - AluSx SINE Alu 0 312 1 257 133 117 0 chr9 113973607 113973667 -3888960 - L1M LINE L1 -844 5330 5264 2186 211 38 88 chr9 113973672 113973831 -3888796 - L1M4 LINE L1 -3084 3298 3133 2044 147 0 0 chr9 113973831 113974143 -3888484 - AluSx SINE Alu 0 312 1 2186 211 38 88 chr9 113974143 113974411 -3888216 - L1M4 LINE L1 -3249 3133 2853 1692 184 3 3 chr9 113974411 113974705 -3887922 - AluJo SINE Alu -18 294 1 2186 211 38 88 chr9 113974705 113975196 -3887431 - L1M4 LINE L1 -3529 2853 2339 2054 102 41 0 chr9 113975196 113975489 -3887138 + AluSx SINE Alu 1 305 -7 1704 55 0 14 chr9 113975489 113975709 -3886918 + AluY SINE Alu 77 293 -18 2072 119 3 0 chr9 113975709 113976015 -3886612 + AluSq SINE Alu 1 307 0 2186 211 38 88 chr9 113976015 113976072 -3886555 - L1M4 LINE L1 -4041 2341 2283 2413 68 0 3 chr9 113976072 113976382 -3886245 - AluY SINE Alu -2 309 1 2186 211 38 88 chr9 113976382 113976476 -3886151 - L1M4 LINE L1 -4099 2283 2186 1080 113 44 0 chr9 113976476 113976636 -3885991 - L1PA8 LINE L1 -6 6166 6000 2186 211 38 88 chr9 113976636 113976913 -3885714 - L1M4 LINE L1 -4196 2186 2003 2078 151 0 0 chr9 113976914 113977225 -3885402 - AluSx SINE Alu -1 311 1 1917 141 0 13 chr9 113977288 113977587 -3885040 + AluJb SINE Alu 13 307 -5 464 352 83 39 chr9 113977593 113977776 -3884851 - L1M4 LINE L1 -1129 5017 4844 1734 116 12 0 chr9 113977776 113978027 -3884600 - AluSx SINE Alu -4 308 55 464 352 83 39 chr9 113978027 113978204 -3884423 - L1M4 LINE L1 -1302 4844 4641 487 207 14 76 chr9 114029524 114029669 -3832958 - MIR SINE MIR -112 150 15 469 373 44 8 chr9 114030738 114030990 -3831637 - MIR SINE MIR 0 262 2 2186 100 0 0 chr9 114031453 114031744 -3830883 + AluSx SINE Alu 12 302 -10 363 259 129 0 chr9 114031930 114032046 -3830581 + MIR SINE MIR 60 190 -72 207 100 0 0 chr9 114033402 114033432 -3829195 + (CCCCG)n Simple_repeat Simple_repeat 1 30 0 375 45 45 0 chr9 114033627 114033693 -3828934 + (CGGGGG)n Simple_repeat Simple_repeat 4 72 0 218 307 47 39 chr9 114036065 114036192 -3826435 - MIR SINE MIR -58 150 23 228 272 78 48 chr9 114036433 114036536 -3826091 + MIR SINE MIR 32 137 -71 318 256 32 72 chr9 114039600 114039725 -3822902 - L1ME4a LINE L1 -190 5931 5812 319 342 10 10 chr9 114039730 114039923 -3822704 - L1ME4a LINE L1 -370 5751 5559 235 326 77 0 chr9 114041457 114041638 -3820989 - MER117 DNA MER1_type 0 197 3 318 87 0 0 chr9 114043398 114043444 -3819183 + (TG)n Simple_repeat Simple_repeat 1 46 0 238 146 0 0 chr9 114044076 114044117 -3818510 - MIR SINE MIR -90 118 78 2016 110 16 32 chr9 114044414 114044722 -3817905 - AluSq SINE Alu -10 303 1 323 300 116 42 chr9 114047544 114047734 -3814893 - MIR SINE MIR -40 222 19 653 168 47 40 chr9 114047764 114047913 -3814714 - FRAM SINE Alu -1 175 26 2295 109 0 0 chr9 114048760 114049072 -3813555 + AluSx SINE Alu 1 312 0 2075 92 13 16 chr9 114049244 114049549 -3813078 - AluY SINE Alu -7 304 1 2347 237 26 68 chr9 114049563 114050129 -3812498 - L1MB5 LINE L1 -1 6173 5585 2187 97 3 7 chr9 114050129 114050437 -3812190 - AluSx SINE Alu -5 307 1 2347 237 26 68 chr9 114050437 114050466 -3812161 - L1MB5 LINE L1 -589 5585 5556 2372 80 0 10 chr9 114050466 114050779 -3811848 - AluY SINE Alu 0 311 2 2347 237 26 68 chr9 114050779 114050908 -3811719 - L1MB5 LINE L1 -618 5556 5478 920 114 8 0 chr9 114050933 114051065 -3811562 - AluSq/x SINE Alu -180 133 1 241 211 19 0 chr9 114051604 114051656 -3810971 - MIR SINE MIR -97 165 113 362 285 35 0 chr9 114052084 114052213 -3810414 + MIR SINE MIR 103 235 -27 1955 134 3 7 chr9 114052214 114052506 -3810121 - AluSx SINE Alu -21 291 1 216 187 180 10 chr9 114052961 114053077 -3809550 + MIR SINE MIR 7 150 -58 207 232 36 0 chr9 114053102 114053158 -3809469 - MIR3 SINE MIR -8 200 143 2087 108 14 0 chr9 114053581 114053878 -3808749 + AluSx SINE Alu 1 301 -11 292 282 183 8 chr9 114054092 114054223 -3808404 - L3 LINE CR1 -22 1555 1402 542 325 110 3 chr9 114054495 114054787 -3807840 - MER77 LTR ERV1 -6 599 277 285 267 0 0 chr9 114055571 114055631 -3806996 - L2 LINE L2 0 3272 3213 192 311 44 11 chr9 114056365 114056455 -3806172 - MER5A DNA MER1_type -31 158 66 * 210 384 12 0 chr9 114056380 114056466 -3806161 + MER5A DNA MER1_type 60 146 -43 687 126 13 133 chr9 114057069 114057220 -3805407 - FLAM_C SINE Alu 0 133 1 252 335 12 6 chr9 114057777 114057911 -3804716 - MIR SINE MIR -29 233 100 182 329 27 0 chr9 114058683 114058756 -3803871 + MIR SINE MIR 73 147 -115 349 241 46 19 chr9 114058892 114059000 -3803627 + MIR3 SINE MIR 50 160 -48 641 191 96 11 chr9 114059004 114059182 -3803445 - MER117 DNA MER1_type -4 193 1 1217 160 246 8 chr9 114059298 114059542 -3803085 - AluJo SINE Alu 0 302 1 3822 176 23 22 chr9 114061111 114061799 -3800828 - L1MB3 LINE L1 -1 6182 5491 2089 128 10 0 chr9 114061799 114062104 -3800523 - AluSx SINE Alu -4 308 1 3822 176 23 22 chr9 114062104 114062148 -3800479 - L1MB3 LINE L1 -692 5491 5449 1409 173 93 14 chr9 114062232 114062521 -3800106 - AluJo SINE Alu 0 312 1 2043 118 0 22 chr9 114062529 114062843 -3799784 - AluSx SINE Alu 0 312 6 2170 85 38 0 chr9 114062939 114063232 -3799395 - AluSg SINE Alu -6 304 1 635 251 133 10 chr9 114063266 114063461 -3799166 - MIR SINE MIR 0 262 44 414 299 37 23 chr9 114064196 114064410 -3798217 - L2 LINE L2 -20 3293 3077 782 206 0 0 chr9 114064971 114065102 -3797525 + FLAM_A SINE Alu 1 131 -2 2135 98 0 46 chr9 114065105 114065241 -3797386 + AluSx SINE Alu 1 142 -170 2183 106 13 0 chr9 114065241 114065544 -3797083 + AluSp SINE Alu 1 307 -6 2135 98 0 46 chr9 114065544 114065732 -3796895 + AluSx SINE Alu 142 310 -2 1979 133 30 0 chr9 114066212 114066512 -3796115 - AluSq SINE Alu -4 309 1 1893 137 3 13 chr9 114066575 114066874 -3795753 + AluJb SINE Alu 13 308 -4 470 353 83 36 chr9 114066880 114067062 -3795565 - L1M4 LINE L1 -1129 5017 4845 1751 112 12 0 chr9 114067062 114067313 -3795314 - AluSx SINE Alu -4 308 55 470 353 83 36 chr9 114067313 114067490 -3795137 - L1M4 LINE L1 -1301 4845 4641 811 124 9 0 chr9 114067640 114067753 -3794874 - FLAM_A SINE Alu -18 124 11 398 289 64 56 chr9 114067758 114068007 -3794620 + L2 LINE L2 2851 3101 -212 885 39 0 0 chr9 114068008 114068110 -3794517 + AluJ SINE Alu 34 135 -177 2084 84 0 0 chr9 114068110 114068371 -3794256 + AluY SINE Alu 1 261 -50 573 111 12 0 chr9 114068371 114068452 -3794175 + AluSg/x SINE Alu 216 297 -12 1251 131 0 25 chr9 114068452 114068651 -3793976 + AluJ SINE Alu 118 311 -1 185 315 56 34 chr9 114068728 114068817 -3793810 + L2 LINE L2 3195 3285 -28 192 277 46 15 chr9 114068851 114068916 -3793711 + MIR SINE MIR 3 69 -193 327 312 116 6 chr9 114069996 114070195 -3792432 + MIR SINE MIR 10 229 -33 487 207 14 76 chr9 114071311 114071456 -3791171 - MIR SINE MIR -112 150 15 469 373 44 8 chr9 114072525 114072777 -3789850 - MIR SINE MIR 0 262 2 2186 100 0 0 chr9 114073240 114073531 -3789096 + AluSx SINE Alu 12 302 -10 363 259 129 0 chr9 114073717 114073833 -3788794 + MIR SINE MIR 60 190 -72 207 100 0 0 chr9 114075189 114075219 -3787408 + (CCCCG)n Simple_repeat Simple_repeat 1 30 0 399 56 42 0 chr9 114075414 114075485 -3787142 + (CGGGGG)n Simple_repeat Simple_repeat 4 77 0 218 307 47 39 chr9 114077851 114077978 -3784649 - MIR SINE MIR -58 150 23 228 272 78 48 chr9 114078219 114078322 -3784305 + MIR SINE MIR 32 137 -71 318 256 32 72 chr9 114081386 114081511 -3781116 - L1ME4a LINE L1 -190 5931 5812 319 342 10 10 chr9 114081516 114081709 -3780918 - L1ME4a LINE L1 -370 5751 5559 235 326 77 0 chr9 114083243 114083424 -3779203 - MER117 DNA MER1_type 0 197 3 318 87 0 0 chr9 114085184 114085230 -3777397 + (TG)n Simple_repeat Simple_repeat 1 46 0 238 146 0 0 chr9 114085862 114085903 -3776724 - MIR SINE MIR -90 118 78 2016 110 16 32 chr9 114086200 114086508 -3776119 - AluSq SINE Alu -10 303 1 323 300 116 42 chr9 114089330 114089520 -3773107 - MIR SINE MIR -40 222 19 653 168 47 40 chr9 114089550 114089699 -3772928 - FRAM SINE Alu -1 175 26 306 274 51 51 chr9 114090632 114090749 -3771878 + L2 LINE L2 2956 3072 -200 206 354 10 10 chr9 114091036 114091132 -3771495 - MIR SINE MIR -95 113 18 266 308 66 11 chr9 114091438 114091529 -3771098 + MIR SINE MIR 49 144 -118 186 374 154 16 chr9 114092358 114092481 -3770146 + L3 LINE CR1 1425 1564 -13 586 289 75 5 chr9 114092575 114092776 -3769851 + MIR SINE MIR 48 262 0 523 304 25 6 chr9 114293488 114293649 -3568978 + MIR3 SINE MIR 33 196 -12 1157 214 73 9 chr9 114293870 114294211 -3568416 - MER74B LTR ERVL -56 566 204 232 116 0 0 chr9 114294302 114294345 -3568282 - MER74B LTR ERVL -579 43 1 252 296 31 10 chr9 114294358 114294456 -3568171 - MIR SINE MIR -67 141 42 246 211 99 0 chr9 114296070 114296141 -3566486 - MIR SINE MIR -117 145 68 212 236 45 90 chr9 114296159 114296248 -3566379 - MIR SINE MIR -147 115 31 257 333 12 0 chr9 114296419 114296503 -3566124 - MIR3 SINE MIR -15 193 109 311 212 12 0 chr9 114298082 114298167 -3564460 + (CA)n Simple_repeat Simple_repeat 2 87 0 332 321 9 28 chr9 114298917 114299026 -3563601 + MIR SINE MIR 47 153 -109 2244 92 3 3 chr9 114299672 114299966 -3562661 - AluSx SINE Alu -18 294 1 245 230 68 0 chr9 114301741 114301815 -3560812 - MER96 DNA MER1_type? 0 175 97 314 300 96 18 chr9 114302023 114302467 -3560160 - L1MC/D LINE L1 -748 5398 5195 285 336 164 15 chr9 114302473 114302607 -3560020 - MIR SINE MIR -92 170 17 319 282 34 34 chr9 114303561 114303678 -3558949 - L1MC/D LINE L1 -2956 3190 3074 2159 132 6 0 chr9 114303678 114303989 -3558638 - AluSq SINE Alu 0 313 1 202 200 0 0 chr9 114305500 114305540 -3557087 + GA-rich Low_complexity Low_complexity 4 43 0 722 256 44 0 chr9 114306261 114306441 -3556186 + MER5A DNA MER1_type 1 188 -1 1538 117 133 0 chr9 114307239 114307523 -3555104 - AluSx SINE Alu 0 317 1 414 262 19 0 chr9 114307534 114307641 -3554986 - MIR SINE MIR -67 141 33 182 288 85 0 chr9 114307878 114307937 -3554690 - MIR SINE MIR -141 121 58 265 317 39 10 chr9 114309292 114309396 -3553231 + MIR SINE MIR 48 154 -108 295 368 15 23 chr9 114309397 114309530 -3553097 + L2 LINE L2 3094 3225 -88 749 40 56 0 chr9 114310540 114310666 -3551961 + GA-rich Low_complexity Low_complexity 2 134 0 274 322 83 15 chr9 114311184 114311389 -3551238 - L2 LINE L2 -809 2505 2287 349 262 107 0 chr9 114312292 114312414 -3550213 + MIR3 SINE MIR 12 146 -62 403 275 81 6 chr9 114313379 114313539 -3549088 - MIR SINE MIR -88 174 3 268 305 105 9 chr9 114313696 114313801 -3548826 + MIR SINE MIR 34 148 -60 233 192 0 82 chr9 114313982 114314055 -3548572 - MER3 DNA MER1_type -4 205 139 1065 95 0 0 chr9 114314055 114314192 -3548435 + AluJb SINE Alu 1 137 -175 2262 113 3 3 chr9 114314192 114314503 -3548124 + AluSx SINE Alu 1 311 -1 2232 106 3 0 chr9 114314612 114314915 -3547712 - AluSp SINE Alu -9 304 1 352 250 62 28 chr9 114316543 114316687 -3545940 - MER117 DNA MER1_type -40 157 9 290 229 84 0 chr9 114318167 114318250 -3544377 + MER63 DNA MER1_type 8 723 -339 404 223 74 29 chr9 114318616 114318765 -3543862 - MIR SINE MIR -62 146 30 419 142 14 54 chr9 114319602 114319750 -3542877 + CT-rich Low_complexity Low_complexity 2 143 0 1932 78 118 0 chr9 114320329 114320600 -3542027 - AluSq SINE Alu -10 303 1 377 271 40 60 chr9 114320650 114320801 -3541826 - L1ME4a LINE L1 -15 6106 5959 188 302 127 48 chr9 114320917 114321043 -3541584 - MIR3 SINE MIR -10 198 63 671 109 11 65 chr9 114321410 114321594 -3541033 + (TCTCCC)n Simple_repeat Simple_repeat 5 178 0 2369 65 0 7 chr9 114322321 114322614 -3540013 + AluSg SINE Alu 16 306 -4 1052 265 92 52 chr9 114324226 114324671 -3537956 - MLT1C LTR MaLR -4 463 1 3725 214 28 33 chr9 114326836 114327317 -3535310 + L1MB2 LINE L1 4826 5308 -863 2076 129 0 23 chr9 114327317 114327620 -3535007 + AluSx SINE Alu 1 296 -16 3725 214 28 33 chr9 114327620 114328065 -3534562 + L1MB2 LINE L1 5308 5759 -412 1809 158 10 10 chr9 114328065 114328376 -3534251 + AluJo SINE Alu 1 311 -1 3725 214 28 33 chr9 114328376 114328734 -3533893 + L1MB2 LINE L1 5759 6117 -54 343 269 6 62 chr9 114328916 114329076 -3533551 + L1MEd LINE L1 1107 1257 -4862 2025 124 0 0 chr9 114329115 114329398 -3533229 + AluSx SINE Alu 3 285 -27 3106 210 52 5 chr9 114330518 114331190 -3531437 + MER39 LTR ERV1 4 707 0 282 250 125 11 chr9 114332401 114332489 -3530138 - MIR3 SINE MIR -5 203 106 775 235 75 0 chr9 114336264 114336464 -3526163 + MER20 DNA MER1_type 5 219 0 259 356 0 11 chr9 114336482 114336572 -3526055 + MIR SINE MIR 173 261 -1 228 290 24 17 chr9 114337140 114337243 -3525384 - MIR3 SINE MIR -50 158 80 366 282 157 24 chr9 114338440 114338734 -3523893 + L2 LINE L2 2921 3253 -19 2057 110 0 20 chr9 114339487 114339786 -3522841 - AluSq SINE Alu -20 293 1 839 240 60 20 chr9 114340167 114340367 -3522260 + MIR SINE MIR 3 210 -52 488 258 32 7 chr9 114340369 114340524 -3522103 - MER104 DNA Tc2 -9 171 13 293 239 14 0 chr9 114340651 114340722 -3521905 + Charlie1 DNA MER1_type 2688 2759 -2 256 218 0 0 chr9 114341395 114341450 -3521177 - Tigger7 DNA MER2_type -40 2547 2493 2237 201 46 20 chr9 114341456 114341478 -3521149 - Tigger7 DNA MER2_type -216 517 497 2342 91 7 3 chr9 114341478 114341787 -3520840 - AluSx SINE Alu -2 310 1 2237 201 46 20 chr9 114341787 114342267 -3520360 - Tigger7 DNA MER2_type -236 497 2 288 291 88 109 chr9 114342326 114342372 -3520255 - HAL1 LINE L1 -737 1770 1725 2337 79 0 28 chr9 114342372 114342690 -3519937 - AluY SINE Alu -2 309 1 288 291 88 109 chr9 114342690 114343487 -3519140 - HAL1 LINE L1 -782 1725 945 182 303 30 15 chr9 114343631 114343697 -3518930 + L2 LINE L2 1138 1204 -2110 2290 134 18 32 chr9 114344381 114344761 -3517866 + THE1C LTR MaLR 1 375 0 1634 183 3 24 chr9 114344939 114345229 -3517398 + AluJo SINE Alu 1 284 -28 2330 112 128 18 chr9 114345423 114345807 -3516820 - MSTA LTR MaLR 0 428 3 2398 103 8 15 chr9 114345809 114346206 -3516421 - MSTA-int LTR MaLR 0 1580 1187 3464 150 7 10 chr9 114346379 114346987 -3515640 - MSTA-int LTR MaLR -398 1182 577 216 0 0 0 chr9 114347437 114347461 -3515166 + (CA)n Simple_repeat Simple_repeat 2 25 0 188 275 50 38 chr9 114347742 114347822 -3514805 + MIR SINE MIR 63 143 -119 1329 204 166 2 chr9 114348210 114348637 -3513990 + MLT1D LTR MaLR 1 497 -8 264 261 0 87 chr9 114348732 114348847 -3513780 - LTR16C LTR ERVL 0 491 387 191 204 130 0 chr9 114350151 114350205 -3512422 + MIR SINE MIR 95 155 -107 2506 200 35 3 chr9 114350454 114351024 -3511603 - L1MB3 LINE L1 -23 6160 5573 335 348 102 43 chr9 114351026 114351282 -3511345 - L1ME3 LINE L1 -239 5923 5653 2550 98 34 14 chr9 114351961 114352318 -3510309 + THE1B LTR MaLR 1 364 0 1284 156 110 11 chr9 114352318 114352581 -3510046 + MSTA LTR MaLR 140 428 0 6597 178 32 66 chr9 114352583 114354375 -3508252 + MLT1D-int LTR MaLR 2 1735 0 2330 112 128 18 chr9 114354377 114354761 -3507866 + MSTA LTR MaLR 3 428 0 1634 183 3 24 chr9 114354955 114355245 -3507382 - AluJo SINE Alu -28 284 1 2290 134 18 32 chr9 114355423 114355803 -3506824 - THE1C LTR MaLR 0 375 1 182 303 30 15 chr9 114356487 114356553 -3506074 - L2 LINE L2 -2110 1204 1138 234 291 88 109 chr9 114356697 114357494 -3505133 + HAL1 LINE L1 945 1725 -782 2337 79 0 28 chr9 114357494 114357812 -3504815 + AluY SINE Alu 1 309 -2 234 291 88 109 chr9 114357812 114357858 -3504769 + HAL1 LINE L1 1725 1770 -737 2237 201 46 20 chr9 114357917 114358397 -3504230 + Tigger7 DNA MER2_type 2 497 -236 2342 91 7 3 chr9 114358397 114358706 -3503921 + AluSx SINE Alu 1 310 -2 2237 201 46 20 chr9 114358706 114358728 -3503899 + Tigger7 DNA MER2_type 497 517 -216 256 218 0 0 chr9 114358734 114358789 -3503838 + Tigger7 DNA MER2_type 2393 2447 -40 293 239 14 0 chr9 114359462 114359533 -3503094 - Charlie1 DNA MER1_type -2 2759 2688 488 258 32 7 chr9 114359660 114359815 -3502812 + MER104 DNA Tc2 13 171 -9 839 240 60 20 chr9 114359817 114360017 -3502610 - MIR SINE MIR -52 210 3 2057 110 0 20 chr9 114360398 114360697 -3501930 + AluSq SINE Alu 1 293 -20 253 265 141 16 chr9 114360919 114361104 -3501523 - LTR33 LTR ERVL -10 511 304 231 376 19 1 chr9 114362674 114362799 -3499828 - MIR SINE MIR -71 137 20 383 297 27 0 chr9 114362919 114363030 -3499597 + L2 LINE L2 3145 3258 -14 380 324 97 5 chr9 114363153 114363338 -3499289 - L2 LINE L2 -227 3045 2844 345 256 202 8 chr9 114363875 114364004 -3498623 - L2 LINE L2 -1 3312 3159 253 258 34 56 chr9 114364867 114364956 -3497671 + MIR SINE MIR 89 175 -87 235 290 16 0 chr9 114366255 114366317 -3496310 - L3 LINE CR1 -96 1481 1419 321 273 141 0 chr9 114367282 114367381 -3495246 + MIR SINE MIR 74 186 -76 183 129 0 0 chr9 114367806 114367837 -3494790 + (TC)n Simple_repeat Simple_repeat 1 31 0 471 329 7 13 chr9 114367976 114368125 -3494502 + MIR SINE MIR 114 261 -1 225 217 138 6 chr9 114368440 114368548 -3494079 + MIR3 SINE MIR 71 156 -52 2163 110 10 10 chr9 114368644 114368953 -3493674 + AluSx SINE Alu 1 309 -3 212 321 49 0 chr9 114368957 114369038 -3493589 - MIR SINE MIR -11 251 167 548 351 49 0 chr9 114369075 114369300 -3493327 - L3 LINE CR1 -108 1469 1234 378 266 152 41 chr9 114369382 114369580 -3493047 - MIR SINE MIR 0 262 44 21 100 0 0 chr9 114369760 114369830 -3492797 + GC_rich Low_complexity Low_complexity 1 70 0 467 307 77 5 chr9 114370505 114370739 -3491888 - MIR SINE MIR -12 250 4 392 243 119 51 chr9 114371875 114372052 -3490575 + MIR3 SINE MIR 6 194 -14 208 277 0 0 chr9 114372996 114373043 -3489584 + MIR SINE MIR 50 96 -166 220 320 144 21 chr9 114373101 114373385 -3489242 - L2 LINE L2 -461 2853 2535 367 308 130 7 chr9 114373837 114373983 -3488644 + MIR SINE MIR 2 165 -97 180 0 0 0 chr9 114374429 114374449 -3488178 + (CAG)n Simple_repeat Simple_repeat 1 20 0 243 188 83 0 chr9 114374451 114374499 -3488128 + MER5A DNA MER1_type 47 98 -91 186 43 0 0 chr9 114374701 114374724 -3487903 + (TTGG)n Simple_repeat Simple_repeat 2 24 0 2125 109 0 29 chr9 114375067 114375379 -3487248 + AluSx SINE Alu 1 303 -9 319 229 52 21 chr9 114375440 114375536 -3487091 - L2 LINE L2 -184 3088 2990 321 236 132 28 chr9 114376832 114376938 -3485689 + MIR SINE MIR 28 144 -118 681 161 6 11 chr9 114378912 114379092 -3483535 + (CA)n Simple_repeat Simple_repeat 2 180 0 627 186 6 22 chr9 114379113 114379296 -3483331 + (CA)n Simple_repeat Simple_repeat 1 180 0 475 240 6 6 chr9 114379345 114379524 -3483103 + (CA)n Simple_repeat Simple_repeat 1 179 0 460 246 11 0 chr9 114379535 114379710 -3482917 + (CA)n Simple_repeat Simple_repeat 1 177 0 219 203 0 0 chr9 114379723 114379792 -3482835 + (CA)n Simple_repeat Simple_repeat 2 70 0 406 328 105 8 chr9 114379875 114380122 -3482505 - L2 LINE L2 -180 3092 2822 282 56 0 0 chr9 114380576 114380612 -3482015 + (TCCC)n Simple_repeat Simple_repeat 1 36 0 2480 267 47 23 chr9 114381284 114382701 -3479926 - L1MEc LINE L1 -4748 1648 144 260 267 69 59 chr9 114382812 114382913 -3479714 - MIR SINE MIR -94 168 67 331 280 159 46 chr9 114383259 114383498 -3479129 - L2 LINE L2 0 3313 3048 238 255 191 14 chr9 114383537 114383678 -3478949 - L2 LINE L2 -1136 2178 2013 282 212 45 0 chr9 114383692 114383758 -3478869 + MER5A DNA MER1_type 6 74 -115 2128 120 0 10 chr9 114383760 114384069 -3478558 + AluSx SINE Alu 1 306 -6 306 312 161 29 chr9 114384244 114384555 -3478072 + L2 LINE L2 2828 3179 -93 201 319 113 40 chr9 114384660 114384908 -3477719 - L2 LINE L2 -183 3089 2824 190 234 43 0 chr9 114385472 114385519 -3477108 + L2 LINE L2 3206 3254 -18 211 282 141 0 chr9 114385975 114386053 -3476574 + MIR SINE MIR 66 154 -108 450 301 24 0 chr9 114386188 114386354 -3476273 - MER5B DNA MER1_type 0 178 9 487 215 130 24 chr9 114386357 114386516 -3476111 - MER5A DNA MER1_type -2 187 1 216 297 131 55 chr9 114387007 114387297 -3475330 - L2 LINE L2 -4 3268 2957 376 270 117 6 chr9 114387491 114387654 -3474973 + MER5A DNA MER1_type 1 181 -8 220 222 19 0 chr9 114388685 114388739 -3473888 + MIR SINE MIR 108 162 -100 567 150 21 54 chr9 114388913 114389153 -3473474 + GA-rich Low_complexity Low_complexity 1 232 0 242 298 33 74 chr9 114389758 114389879 -3472748 + MIR SINE MIR 77 192 -70 195 297 11 44 chr9 114389933 114390024 -3472603 - L2 LINE L2 -529 2785 2698 190 240 93 53 chr9 114390145 114390220 -3472407 - L2 LINE L2 -2621 693 616 208 294 64 18 chr9 114390363 114390472 -3472155 + MIR SINE MIR 40 153 -55 890 153 6 0 chr9 114492200 114492377 -3370250 + (TGGA)n Simple_repeat Simple_repeat 2 179 0 889 144 11 0 chr9 114492393 114492567 -3370060 + (TGGA)n Simple_repeat Simple_repeat 4 179 0 1209 121 0 0 chr9 114492580 114492935 -3369692 + (TGGA)n Simple_repeat Simple_repeat 1 355 0 2079 163 74 36 chr9 114493503 114493899 -3368728 - L1MB7 LINE L1 -1 6183 5763 1997 112 22 56 chr9 114493899 114494220 -3368407 - AluSq SINE Alu -3 310 1 2079 163 74 36 chr9 114494220 114494320 -3368307 - L1MB7 LINE L1 -421 5763 5668 472 160 20 20 chr9 114494804 114494882 -3367745 + Charlie5 DNA MER1_type 16 96 -2528 1797 177 0 0 chr9 114494882 114495181 -3367446 - AluJo SINE Alu -13 299 1 472 160 20 20 chr9 114495181 114495202 -3367425 + Charlie5 DNA MER1_type 95 115 -2509 1267 232 9 6 chr9 114495204 114495523 -3367104 + Charlie5 DNA MER1_type 2233 2552 -60 987 235 23 15 chr9 114495524 114495784 -3366843 + L1MB7 LINE L1 5806 6067 -117 702 200 11 4 chr9 114496824 114497102 -3365525 + (TGGA)n Simple_repeat Simple_repeat 1 280 0 606 207 0 0 chr9 114497168 114497347 -3365280 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 812 177 7 7 chr9 114497394 114497830 -3364797 + (TGGA)n Simple_repeat Simple_repeat 1 436 0 496 168 22 22 chr9 114497843 114498022 -3364605 + (TGGA)n Simple_repeat Simple_repeat 2 180 0 356 273 125 0 chr9 114498551 114498678 -3363949 + MIR SINE MIR 34 172 -70 2039 136 3 0 chr9 114499563 114499864 -3362763 - AluJb SINE Alu -10 302 1 805 183 0 0 chr9 114500801 114500932 -3361695 - FLAM_C SINE Alu -2 131 1 32 67 0 0 chr9 114502885 114502945 -3359682 + GC_rich Low_complexity Low_complexity 1 60 0 25 0 0 0 chr9 114503101 114503126 -3359501 + GC_rich Low_complexity Low_complexity 1 25 0 27 73 0 0 chr9 114503372 114503427 -3359200 + GC_rich Low_complexity Low_complexity 1 55 0 22 56 0 0 chr9 114503684 114503720 -3358907 + GC_rich Low_complexity Low_complexity 1 36 0 25 83 0 0 chr9 114503760 114503820 -3358807 + GC_rich Low_complexity Low_complexity 1 60 0 22 0 0 0 chr9 114503895 114503917 -3358710 + GC_rich Low_complexity Low_complexity 1 22 0 30 89 0 0 chr9 114504101 114504180 -3358447 + GC_rich Low_complexity Low_complexity 1 79 0 339 327 103 24 chr9 114505613 114505778 -3356849 + MIR SINE MIR 54 231 -31 1221 98 0 0 chr9 114506053 114506216 -3356411 - AluSg/x SINE Alu -13 299 137 2134 101 10 0 chr9 114506216 114506384 -3356243 - AluSg SINE Alu -11 299 125 2326 93 3 3 chr9 114506384 114506697 -3355930 - AluSp SINE Alu 0 313 1 2134 101 10 0 chr9 114506697 114506824 -3355803 - AluSg SINE Alu -185 125 1 1234 149 123 43 chr9 114506836 114507112 -3355515 - AluSg SINE Alu -12 298 1 185 296 0 0 chr9 114507770 114507824 -3354803 - L2 LINE L2 -11 3261 3208 216 321 62 36 chr9 114508688 114508702 -3353925 - L2 LINE L2 -5 3267 3255 276 54 36 18 chr9 114508702 114508758 -3353869 + (TAAA)n Simple_repeat Simple_repeat 3 59 0 216 321 62 36 chr9 114508758 114508855 -3353772 - L2 LINE L2 -17 3255 3153 1633 277 120 60 chr9 114509123 114510172 -3352455 - L1MC4 LINE L1 -143 7899 6915 2308 105 0 0 chr9 114510172 114510478 -3352149 + AluSx SINE Alu 1 306 -6 423 0 0 0 chr9 114510478 114510525 -3352102 + (CA)n Simple_repeat Simple_repeat 2 48 0 1633 277 120 60 chr9 114510525 114510688 -3351939 - L1MC4 LINE L1 -1126 6916 6613 501 211 16 0 chr9 114510704 114510827 -3351800 - Charlie5 DNA MER1_type 0 2624 2500 1197 201 0 0 chr9 114510830 114511044 -3351583 - AluSg/x SINE Alu -15 295 82 268 296 0 0 chr9 114511049 114511120 -3351507 + MER106A DNA MER1_type 2 72 -164 1796 163 3 0 chr9 114511131 114511413 -3351214 - AluJo SINE Alu -21 291 9 437 209 33 34 chr9 114511430 114511479 -3351148 + MER106A DNA MER1_type 127 175 -61 2145 119 0 7 chr9 114511479 114511781 -3350846 + AluSx SINE Alu 1 300 -12 437 209 33 34 chr9 114511781 114511896 -3350731 + MER106A DNA MER1_type 175 235 -1 225 0 0 0 chr9 114511941 114511966 -3350661 + (GGGTG)n Simple_repeat Simple_repeat 4 28 0 1193 232 7 23 chr9 114512736 114513046 -3349581 - MER58B DNA MER1_type 0 341 37 207 393 66 8 chr9 114514074 114514196 -3348431 + MIR SINE MIR 119 247 -15 197 336 56 40 chr9 114514780 114514905 -3347722 - L2 LINE L2 -223 3049 2923 366 311 81 14 chr9 114518800 114518948 -3343679 + MIR SINE MIR 47 204 -58 368 301 88 13 chr9 114518959 114519198 -3343429 + L1MB5 LINE L1 5847 6103 -71 2166 83 0 36 chr9 114519535 114519837 -3342790 - AluSg1 SINE Alu -18 291 1 420 244 73 0 chr9 114519893 114520016 -3342611 + ORSL DNA AcHobo 31 162 -113 331 272 56 64 chr9 114520096 114520221 -3342406 + MIR SINE MIR 29 152 -56 347 299 27 48 chr9 114521059 114521206 -3341421 + MIR3 SINE MIR 7 150 -58 250 208 143 0 chr9 114521667 114521744 -3340883 - L2 LINE L2 -227 3045 2958 235 283 27 12 chr9 114522914 114523016 -3339611 + MIR SINE MIR 83 146 -62 182 179 51 0 chr9 114523733 114523772 -3338855 + MIR SINE MIR 80 120 -142 23 0 0 0 chr9 114524737 114524760 -3337867 + AT_rich Low_complexity Low_complexity 1 23 0 304 156 13 39 chr9 114527370 114527447 -3335180 - L1MA5 LINE L1 -1 6299 6225 4352 170 46 22 chr9 114527447 114527809 -3334818 - L1MA4 LINE L1 -33 6267 5915 2172 121 0 0 chr9 114527809 114528115 -3334512 - AluSx SINE Alu -6 306 1 4352 170 46 22 chr9 114528115 114528707 -3333920 - L1MA4 LINE L1 -385 5915 5290 810 136 0 0 chr9 114528708 114528826 -3333801 - AluSg/x SINE Alu -8 304 187 807 344 60 15 chr9 114529391 114529912 -3332715 + HERV16 LTR ERVL 86 629 -4367 1888 124 59 3 chr9 114529912 114530202 -3332425 + AluSx SINE Alu 1 306 -6 225 94 0 0 chr9 114530325 114530357 -3332270 + (T)n Simple_repeat Simple_repeat 1 32 0 1583 337 66 40 chr9 114530666 114530939 -3331688 - ERVL LTR ERVL -475 5289 5025 1942 135 3 29 chr9 114530939 114531251 -3331376 - AluJb SINE Alu -8 304 1 1583 337 66 40 chr9 114531251 114532353 -3330274 - ERVL LTR ERVL -739 5025 3832 1345 208 10 14 chr9 114532432 114532721 -3329906 + L1MB7 LINE L1 5890 6177 -7 2047 112 20 7 chr9 114532725 114533020 -3329607 - AluSq SINE Alu -14 299 1 627 310 9 13 chr9 114533062 114533291 -3329336 + L1M4 LINE L1 5 232 -6310 810 216 0 44 chr9 114533965 114534146 -3328481 + AluJb SINE Alu 133 305 -7 413 88 18 0 chr9 114534164 114534221 -3328406 + AluS SINE Alu 39 96 -216 3032 141 62 76 chr9 114534274 114534498 -3328129 + MER49 LTR ERV1 226 452 -471 1611 160 0 109 chr9 114534498 114534829 -3327798 - AluJb SINE Alu -17 295 1 3032 141 62 76 chr9 114534829 114535000 -3327627 + MER49 LTR ERV1 452 624 -299 1562 126 137 11 chr9 114535000 114535262 -3327365 - AluSx SINE Alu -17 295 1 3032 141 62 76 chr9 114535262 114535534 -3327093 + MER49 LTR ERV1 624 886 -37 1571 171 35 0 chr9 114535534 114535791 -3326836 + AluJb SINE Alu 3 268 -44 3032 141 62 76 chr9 114535791 114535829 -3326798 + MER49 LTR ERV1 886 923 0 2264 81 0 3 chr9 114535878 114536174 -3326453 + AluSg SINE Alu 1 295 -15 1649 85 46 4 chr9 114536178 114536459 -3326168 + LTR23 LTR ERV1 142 434 -3 1797 163 3 7 chr9 114536479 114536768 -3325859 + AluJb SINE Alu 1 288 -24 2348 89 6 16 chr9 114536776 114537091 -3325536 + AluSq SINE Alu 1 312 -1 2755 141 15 93 chr9 114537091 114537299 -3325328 + MER4D LTR ERV1 3 225 -678 2297 69 14 0 chr9 114537299 114537589 -3325038 - AluSc SINE Alu -15 294 1 2755 141 15 93 chr9 114537589 114537702 -3324925 + MER4D LTR ERV1 225 345 -558 2215 101 3 0 chr9 114537702 114537998 -3324629 - AluSx SINE Alu -15 297 1 2755 141 15 93 chr9 114537998 114538164 -3324463 + MER4D LTR ERV1 345 522 -381 2421 60 13 0 chr9 114538164 114538463 -3324164 - AluY SINE Alu -8 303 1 1487 135 31 0 chr9 114538463 114538685 -3323942 + MER30 DNA MER1_type 2 230 0 2755 141 15 93 chr9 114538685 114538810 -3323817 + MER4D LTR ERV1 521 654 -249 2229 105 3 0 chr9 114538810 114539114 -3323513 - AluSx SINE Alu -7 305 1 2755 141 15 93 chr9 114539114 114539459 -3323168 + MER4D LTR ERV1 654 903 0 344 276 53 86 chr9 114539468 114539564 -3323063 + L1M4 LINE L1 4287 4385 -1761 2166 112 3 0 chr9 114539564 114539860 -3322767 + AluSp SINE Alu 1 297 -16 344 276 53 86 chr9 114539860 114539877 -3322750 + L1M4 LINE L1 4385 4401 -1745 743 139 29 51 chr9 114539877 114540014 -3322613 + L1MA1 LINE L1 6169 6302 0 344 276 53 86 chr9 114540014 114540051 -3322576 + L1M4 LINE L1 4401 4433 -1713 2358 90 3 0 chr9 114540054 114540366 -3322261 - AluSp SINE Alu 0 313 1 731 175 55 20 chr9 114540428 114540628 -3321999 + L1MC3 LINE L1 7571 7777 -8 308 288 12 0 chr9 114540628 114540708 -3321919 + L1M4 LINE L1 5175 5255 -891 851 189 107 0 chr9 114540708 114540950 -3321677 - LTR50 LTR ERVL 0 795 528 756 204 99 35 chr9 114540950 114541151 -3321476 + MER41C LTR ERV1 1 214 -340 1678 162 27 7 chr9 114541164 114541460 -3321167 + AluJb SINE Alu 1 302 -10 2132 113 3 3 chr9 114541921 114542221 -3320406 - AluSx SINE Alu -12 300 1 301 280 15 53 chr9 114542335 114542435 -3320192 - L1M4 LINE L1 -3366 2780 2685 1952 91 0 0 chr9 114542435 114542688 -3319939 + AluSg SINE Alu 48 300 -10 301 280 15 53 chr9 114542688 114542719 -3319908 - L1M4 LINE L1 -3461 2685 2654 934 166 12 0 chr9 114542752 114542915 -3319712 - FRAM SINE Alu -12 164 1 22 0 0 0 chr9 114543144 114543166 -3319461 + AT_rich Low_complexity Low_complexity 1 22 0 219 214 0 0 chr9 114543308 114543378 -3319249 + CT-rich Low_complexity Low_complexity 1 70 0 239 241 0 36 chr9 114543382 114543465 -3319162 + C-rich Low_complexity Low_complexity 5 84 0 477 120 0 76 chr9 114543469 114543627 -3319000 + (TCC)n Simple_repeat Simple_repeat 1 146 0 253 500 0 0 chr9 114543649 114543819 -3318808 + polypyrimidine Low_complexity Low_complexity 1 170 0 570 202 0 0 chr9 114543824 114543997 -3318630 + CT-rich Low_complexity Low_complexity 1 173 0 1209 169 154 23 chr9 114546109 114546375 -3316252 - AluJb SINE Alu -11 301 1 2241 99 7 0 chr9 114547060 114547354 -3315273 - AluSx SINE Alu -16 296 1 225 91 0 0 chr9 114547514 114547547 -3315080 - L1ME LINE L1 -478 5643 5611 798 206 71 0 chr9 114548607 114548762 -3313865 - FRAM SINE Alu -10 166 1 198 71 0 0 chr9 114548970 114548998 -3313629 + (T)n Simple_repeat Simple_repeat 1 28 0 22 56 0 0 chr9 114550202 114550238 -3312389 + AT_rich Low_complexity Low_complexity 1 36 0 243 114 0 0 chr9 114551105 114551149 -3311478 + (A)n Simple_repeat Simple_repeat 1 44 0 209 73 0 73 chr9 114551506 114551547 -3311080 + (T)n Simple_repeat Simple_repeat 1 38 0 180 211 0 0 chr9 114555220 114555258 -3307369 + L2 LINE L2 2323 2360 -954 920 237 24 45 chr9 114555260 114555392 -3307235 + L1MEc LINE L1 2139 2272 -4124 2287 86 0 10 chr9 114555392 114555706 -3306921 + AluY SINE Alu 1 311 0 920 237 24 45 chr9 114555706 114555949 -3306678 + L1MEc LINE L1 2272 2506 -3890 2245 89 3 10 chr9 114555955 114556268 -3306359 + AluSx SINE Alu 1 311 -1 1140 286 56 4 chr9 114556301 114556815 -3305812 + L1MEc LINE L1 3158 3698 -2517 1513 108 0 5 chr9 114556816 114557030 -3305597 - AluSg/x SINE Alu -8 302 90 253 146 0 0 chr9 114557030 114557071 -3305556 - Alu SINE Alu -258 41 1 568 181 31 47 chr9 114557128 114557255 -3305372 - AluJb SINE Alu -187 125 1 265 186 17 0 chr9 114557256 114557315 -3305312 + L1MEc LINE L1 3696 3755 -2460 315 0 0 0 chr9 114560289 114560324 -3302303 + (TG)n Simple_repeat Simple_repeat 2 36 0 1547 176 22 4 chr9 114560324 114560597 -3302030 - AluJo SINE Alu -34 278 1 336 279 120 16 chr9 114561725 114561908 -3300719 - L1MC5 LINE L1 -145 7816 7615 225 0 0 0 chr9 114563462 114563487 -3299140 + (CACCT)n Simple_repeat Simple_repeat 1 25 0 485 289 96 30 chr9 114565506 114565776 -3296851 - L2 LINE L2 -447 2867 2580 309 238 25 0 chr9 114566095 114566175 -3296452 + MER63 DNA MER1_type 678 759 -301 2322 86 0 7 chr9 114568719 114569023 -3293604 + AluSx SINE Alu 1 302 -10 294 29 0 0 chr9 114569025 114569060 -3293567 + (CA)n Simple_repeat Simple_repeat 2 36 0 217 220 170 50 chr9 114570694 114570794 -3291833 - MIR SINE MIR -126 136 25 579 223 32 38 chr9 114571077 114571234 -3291393 - MIR SINE MIR -19 243 88 305 312 55 0 chr9 114572216 114572325 -3290302 + MIR SINE MIR 22 136 -126 210 118 0 0 chr9 114576186 114576220 -3286407 + (TG)n Simple_repeat Simple_repeat 1 34 0 303 93 0 0 chr9 114578220 114578263 -3284364 + (TG)n Simple_repeat Simple_repeat 2 44 0 1059 181 0 0 chr9 114578270 114578436 -3284191 - AluJb SINE Alu -27 285 120 731 176 21 14 chr9 114580192 114580334 -3282293 + L1PA10 LINE L1 6015 6157 -11 212 264 132 11 chr9 114580426 114580517 -3282110 - MIR SINE MIR -70 138 37 414 188 0 0 chr9 114580698 114580794 -3281833 + GA-rich Low_complexity Low_complexity 3 98 0 280 354 27 14 chr9 114581631 114581778 -3280849 - L2 LINE L2 -575 2739 2591 218 244 0 0 chr9 114581927 114581968 -3280659 + polypyrimidine Low_complexity Low_complexity 4 44 0 1043 153 31 126 chr9 114582003 114582264 -3280363 - MER46A DNA MER2_type 0 236 1 249 162 19 10 chr9 114582264 114582319 -3280308 - L1MEc LINE L1 -2464 3751 3696 583 173 31 47 chr9 114582320 114582447 -3280180 + AluJb SINE Alu 1 125 -187 253 146 0 0 chr9 114582504 114582545 -3280082 + Alu SINE Alu 1 41 -261 1499 108 0 5 chr9 114582545 114582759 -3279868 + AluSg/x SINE Alu 92 304 -8 2257 86 3 10 chr9 114583312 114583625 -3279002 - AluSx SINE Alu -1 311 1 920 237 24 45 chr9 114583631 114583874 -3278753 - L1MEc LINE L1 -3890 2506 2272 2287 86 0 10 chr9 114583874 114584188 -3278439 - AluY SINE Alu 0 311 1 920 237 24 45 chr9 114584188 114584320 -3278307 - L1MEc LINE L1 -4124 2272 2139 180 211 0 0 chr9 114584322 114584360 -3278267 - L2 LINE L2 -954 2360 2323 209 73 0 73 chr9 114588033 114588074 -3274553 + (A)n Simple_repeat Simple_repeat 1 38 0 219 133 0 0 chr9 114588431 114588476 -3274151 + (T)n Simple_repeat Simple_repeat 1 45 0 22 56 0 0 chr9 114589343 114589379 -3273248 + AT_rich Low_complexity Low_complexity 1 36 0 798 206 71 0 chr9 114590817 114590972 -3271655 + FRAM SINE Alu 1 166 -10 225 91 0 0 chr9 114592032 114592065 -3270562 + L1ME LINE L1 5611 5643 -478 2265 95 7 0 chr9 114592225 114592519 -3270108 + AluSx SINE Alu 1 296 -16 1209 169 154 23 chr9 114593204 114593470 -3269157 + AluJb SINE Alu 1 301 -11 392 168 0 19 chr9 114595582 114595689 -3266938 + GA-rich Low_complexity Low_complexity 1 105 0 963 123 7 7 chr9 114595744 114595890 -3266737 - AluSq/x SINE Alu -166 146 1 301 280 15 53 chr9 114596004 114596104 -3266523 - L1M4 LINE L1 -3366 2780 2685 1893 93 0 0 chr9 114596104 114596350 -3266277 + AluSg SINE Alu 48 293 -17 301 280 15 53 chr9 114596350 114596381 -3266246 - L1M4 LINE L1 -3461 2685 2654 934 166 12 0 chr9 114596414 114596577 -3266050 - FRAM SINE Alu -12 164 1 22 0 0 0 chr9 114596806 114596828 -3265799 + AT_rich Low_complexity Low_complexity 1 22 0 219 214 0 0 chr9 114596970 114597040 -3265587 + CT-rich Low_complexity Low_complexity 1 70 0 239 241 0 36 chr9 114597044 114597127 -3265500 + C-rich Low_complexity Low_complexity 5 84 0 479 138 0 43 chr9 114597131 114597269 -3265358 + (TCC)n Simple_repeat Simple_repeat 3 134 0 2064 45 0 12 chr9 114697269 114697513 -3165114 + AluY SINE Alu 59 299 -12 320 301 16 32 chr9 114697717 114697840 -3164787 - L2 LINE L2 0 3272 3152 2890 135 21 33 chr9 114698827 114699121 -3163506 + LTR10E LTR ERV1 11 307 -302 2544 60 7 0 chr9 114699121 114699420 -3163207 - AluY SINE Alu -10 301 1 2890 135 21 33 chr9 114699420 114699688 -3162939 + LTR10E LTR ERV1 307 609 0 236 391 14 7 chr9 114700119 114700257 -3162370 + L2 LINE L2 3134 3272 0 1850 163 0 26 chr9 114700381 114700687 -3161940 - AluSx SINE Alu -14 298 1 1754 251 126 32 chr9 114700708 114701452 -3161175 + L1MC3 LINE L1 6814 7627 -158 1014 147 6 6 chr9 114701452 114701609 -3161018 + FRAM SINE Alu 1 156 -20 2189 113 3 7 chr9 114701700 114701991 -3160636 - AluSx SINE Alu -22 290 1 763 241 0 0 chr9 114702028 114702173 -3160454 + FRAM SINE Alu 1 145 -31 2864 200 29 88 chr9 114702196 114702485 -3160142 - L1MA6 LINE L1 -64 6236 5932 2256 83 3 17 chr9 114702485 114702785 -3159842 - AluY SINE Alu -15 296 1 2864 200 29 88 chr9 114702785 114702812 -3159815 - L1MA6 LINE L1 -368 5932 5905 1950 112 3 35 chr9 114702812 114703098 -3159529 + AluSx SINE Alu 1 277 -35 2864 200 29 88 chr9 114703098 114703233 -3159394 - L1MA6 LINE L1 -395 5905 5764 2390 96 0 3 chr9 114703233 114703536 -3159091 - AluSq SINE Alu -11 302 1 2864 200 29 88 chr9 114703536 114703937 -3158690 - L1MA6 LINE L1 -536 5764 5439 1714 190 28 25 chr9 114703937 114704216 -3158411 - MLT1A1 LTR MaLR 0 365 83 2080 133 3 0 chr9 114704216 114704509 -3158118 - AluSg SINE Alu -16 294 1 1714 190 28 25 chr9 114704509 114704592 -3158035 - MLT1A1 LTR MaLR -282 83 2 2864 200 29 88 chr9 114704592 114704668 -3157959 - L1MA6 LINE L1 -861 5439 5360 1941 157 0 20 chr9 114704711 114705016 -3157611 - AluJo SINE Alu -13 299 1 449 233 146 0 chr9 114705026 114705129 -3157498 - FLAM_C SINE Alu -19 124 7 2215 54 65 7 chr9 114705146 114705424 -3157203 + AluY SINE Alu 1 294 -17 2882 181 22 22 chr9 114705641 114706148 -3156479 - L1MA6 LINE L1 -764 5382 4873 2009 130 102 15 chr9 114706148 114706540 -3156087 + MSTA LTR MaLR 3 428 0 2882 181 22 22 chr9 114706540 114706668 -3155959 - L1MA6 LINE L1 -1272 4874 4747 209 157 100 0 chr9 114706679 114706749 -3155878 + (TATAG)n Simple_repeat Simple_repeat 4 80 0 184 130 26 39 chr9 114706761 114706838 -3155789 + (TA)n Simple_repeat Simple_repeat 1 76 0 1802 158 7 21 chr9 114706838 114706964 -3155663 - AluJb SINE Alu -25 287 161 8835 40 1 0 chr9 114706964 114707932 -3154695 + LTR5 LTR ERVK 1 969 0 1802 158 7 21 chr9 114707932 114708096 -3154531 - AluJb SINE Alu -151 161 1 3577 166 19 36 chr9 114708096 114708489 -3154138 + L1 LINE L1 3933 4331 -1815 777 134 0 52 chr9 114708489 114708623 -3154004 + FLAM_C SINE Alu 1 127 -6 3577 166 19 36 chr9 114708623 114708780 -3153847 + L1 LINE L1 4331 4489 -1657 2355 105 0 3 chr9 114708780 114709084 -3153543 + AluSq SINE Alu 1 303 -10 3577 166 19 36 chr9 114709084 114709343 -3153284 + L1 LINE L1 4489 4729 -1417 608 191 12 71 chr9 114709345 114709484 -3153143 + L1MD3 LINE L1 7838 7967 -28 2472 78 0 0 chr9 114709484 114709778 -3152849 + AluY SINE Alu 1 294 -17 608 191 12 71 chr9 114709778 114709806 -3152821 + L1MD3 LINE L1 7967 7995 0 309 68 0 0 chr9 114710509 114710553 -3152074 + (TC)n Simple_repeat Simple_repeat 2 45 0 360 0 0 0 chr9 114710553 114710593 -3152034 + (CA)n Simple_repeat Simple_repeat 1 40 0 2177 101 7 17 chr9 114710714 114711039 -3151588 - AluSg SINE Alu 0 310 1 2368 110 0 0 chr9 114711051 114711361 -3151266 - AluY SINE Alu -1 310 1 2559 70 0 0 chr9 114711375 114711673 -3150954 - AluY SINE Alu -13 298 1 255 280 97 38 chr9 114712042 114712228 -3150399 - L2 LINE L2 -218 3054 2858 181 333 20 0 chr9 114712372 114712474 -3150153 - L2 LINE L2 -758 2556 2453 556 271 26 7 chr9 114712697 114712848 -3149779 - MIR SINE MIR -92 170 17 542 282 15 0 chr9 114712859 114712990 -3149637 + MER2 DNA MER2_type 1 133 -212 2374 88 3 0 chr9 114712991 114713285 -3149342 - AluSp SINE Alu -18 295 1 1837 155 0 7 chr9 114713302 114713586 -3149041 - AluJo SINE Alu -26 286 5 279 87 0 0 chr9 114713602 114713648 -3148979 + MER2 DNA MER2_type 128 173 -172 2606 67 0 10 chr9 114713762 114714076 -3148551 + AluY SINE Alu 1 311 0 967 172 32 0 chr9 114714110 114714267 -3148360 + AluJb SINE Alu 141 302 -10 1598 195 70 11 chr9 114714387 114714757 -3147870 - MSTD LTR MaLR -4 392 1 563 213 29 7 chr9 114714848 114714984 -3147643 - MLT1J LTR MaLR -369 142 4 280 284 0 0 chr9 114715153 114715234 -3147393 - L1MEc LINE L1 -4741 1655 1575 2548 76 0 0 chr9 114715280 114715584 -3147043 - AluY SINE Alu -7 304 1 1955 163 7 0 chr9 114715818 114716113 -3146514 + AluJb SINE Alu 1 297 -15 817 183 15 45 chr9 114716129 114716331 -3146296 - L1MB5 LINE L1 -8 6166 5971 1168 189 10 0 chr9 114716331 114716527 -3146100 - AluJb SINE Alu -104 208 11 3197 174 21 41 chr9 114716527 114717402 -3145225 - L1MB5 LINE L1 -201 6471 5580 2399 109 0 0 chr9 114717402 114717705 -3144922 - AluSg SINE Alu -7 303 1 3197 174 21 41 chr9 114717705 114717717 -3144910 - L1MB5 LINE L1 -1092 5580 5569 2548 58 0 26 chr9 114717717 114718030 -3144597 - AluY SINE Alu -6 305 1 3197 174 21 41 chr9 114718030 114718117 -3144510 - L1MB5 LINE L1 -1103 5569 5440 721 180 0 16 chr9 114718126 114718254 -3144373 - FLAM_C SINE Alu -16 127 2 2142 142 0 3 chr9 114718263 114718558 -3144069 - AluSx SINE Alu -18 294 1 1018 177 11 0 chr9 114718560 114718746 -3143881 - L1MB5 LINE L1 -1191 5453 5266 1319 106 11 0 chr9 114718746 114718934 -3143693 - THE1B LTR MaLR 0 364 175 1312 226 19 7 chr9 114718959 114719229 -3143398 - AluJo SINE Alu -39 273 1 1527 119 45 4 chr9 114719230 114719474 -3143153 - MLT1B LTR MaLR -115 275 22 1968 160 16 0 chr9 114719476 114719782 -3142845 + AluSx SINE Alu 1 311 -1 1594 167 65 20 chr9 114719822 114720115 -3142512 + AluJo SINE Alu 7 312 0 1359 216 17 43 chr9 114720129 114720629 -3141998 - L1MB5 LINE L1 -3588 3056 2563 2827 227 50 37 chr9 114721747 114721779 -3140848 - L1MB5 LINE L1 -4066 2580 2550 2313 103 0 10 chr9 114721779 114722090 -3140537 - AluSx SINE Alu -4 308 1 2827 227 50 37 chr9 114722090 114722452 -3140175 - L1MB5 LINE L1 -4096 2550 2194 2360 120 0 0 chr9 114722452 114722761 -3139866 - AluSg SINE Alu -1 309 1 2827 227 50 37 chr9 114722761 114723100 -3139527 - L1MB5 LINE L1 -4452 2194 1861 2306 121 0 9 chr9 114723100 114723415 -3139212 - AluSx SINE Alu 0 312 1 2827 227 50 37 chr9 114723415 114723791 -3138836 - L1MB5 LINE L1 -4785 1861 1349 10680 63 10 52 chr9 114723791 114725238 -3137389 - SVA Other Other -1 1385 1 250 274 0 0 chr9 114725255 114725317 -3137310 - 5S rRNA rRNA -58 63 2 1920 167 28 16 chr9 114725319 114725750 -3136877 - L1MB5 LINE L1 -5185 1357 922 256 289 21 10 chr9 114725786 114725883 -3136744 - L1MEd LINE L1 -5045 1074 977 1218 120 0 0 chr9 114725885 114726043 -3136584 - AluSg/x SINE Alu -21 289 132 323 303 26 32 chr9 114726044 114726199 -3136428 - L1MEd LINE L1 -5155 964 811 347 259 48 60 chr9 114726568 114726734 -3135893 + L2 LINE L2 3084 3247 -66 318 168 10 139 chr9 114726815 114726854 -3135773 - MIR SINE MIR -67 195 153 2330 100 3 0 chr9 114726854 114727153 -3135474 - AluSp SINE Alu -13 300 1 2276 129 0 0 chr9 114727156 114727465 -3135162 - AluSg SINE Alu 0 310 2 318 168 10 139 chr9 114727465 114727522 -3135105 - MIR SINE MIR -111 151 108 1597 154 10 17 chr9 114727538 114727830 -3134797 - AluJo SINE Alu -22 290 1 2459 87 3 0 chr9 114728079 114728379 -3134248 - AluSp SINE Alu -12 301 1 510 288 37 6 chr9 114728524 114728687 -3133940 + MIR SINE MIR 90 257 -5 2028 146 3 9 chr9 114728880 114729216 -3133411 + MER1B DNA MER1_type 4 337 0 428 171 95 29 chr9 114729400 114729505 -3133122 - L2 LINE L2 0 3313 3202 220 270 16 0 chr9 114729652 114729715 -3132912 - MIR SINE MIR -102 160 97 283 285 38 12 chr9 114730670 114730813 -3131814 + MIR SINE MIR 41 137 -71 2281 79 0 49 chr9 114731073 114731401 -3131226 + AluSq SINE Alu 1 312 -1 180 241 127 0 chr9 114731534 114731613 -3131014 - MIR3 SINE MIR -16 192 104 34 65 0 0 chr9 114731765 114731827 -3130800 + GC_rich Low_complexity Low_complexity 1 62 0 23 33 0 0 chr9 114731883 114731913 -3130714 + GC_rich Low_complexity Low_complexity 1 30 0 37 39 0 0 chr9 114732103 114732154 -3130473 + GC_rich Low_complexity Low_complexity 1 51 0 181 115 19 19 chr9 114732167 114732219 -3130408 + (CGGGG)n Simple_repeat Simple_repeat 1 52 0 37 39 0 0 chr9 114732228 114732279 -3130348 + GC_rich Low_complexity Low_complexity 1 51 0 21 57 0 0 chr9 114732374 114732409 -3130218 + GC_rich Low_complexity Low_complexity 1 35 0 57 39 0 0 chr9 114732446 114732524 -3130103 + GC_rich Low_complexity Low_complexity 1 78 0 189 0 0 0 chr9 114732561 114732582 -3130045 + (CCG)n Simple_repeat Simple_repeat 2 22 0 201 74 0 0 chr9 114732629 114732656 -3129971 + (CGG)n Simple_repeat Simple_repeat 3 29 0 30 45 0 0 chr9 114732746 114732790 -3129837 + GC_rich Low_complexity Low_complexity 1 44 0 22 70 0 0 chr9 114732877 114732920 -3129707 + GC_rich Low_complexity Low_complexity 1 43 0 30 59 0 0 chr9 114732966 114733017 -3129610 + GC_rich Low_complexity Low_complexity 1 51 0 2220 114 0 3 chr9 114734915 114735223 -3127404 - AluSg SINE Alu -3 307 1 901 145 0 0 chr9 114735656 114735787 -3126840 - AluSq/x SINE Alu -181 131 1 1847 136 3 44 chr9 114735805 114736121 -3126506 - AluSq SINE Alu -10 303 1 277 309 40 10 chr9 114787161 114787282 -3075345 - MIR SINE MIR -57 151 26 183 206 191 15 chr9 114787450 114787518 -3075109 - L2 LINE L2 -211 3061 2982 211 318 55 45 chr9 114788460 114788570 -3074057 + L2 LINE L2 3201 3311 -2 263 309 0 31 chr9 114788619 114788716 -3073911 + L2 LINE L2 2976 3069 -203 436 271 43 29 chr9 114789031 114789171 -3073456 - MIR SINE MIR -71 191 50 232 298 128 14 chr9 114789351 114789492 -3073135 + MIR SINE MIR 28 184 -78 192 125 0 0 chr9 114789539 114789571 -3073056 + (TCTG)n Simple_repeat Simple_repeat 3 34 0 2456 55 6 6 chr9 114791416 114791727 -3070900 + AluY SINE Alu 1 311 0 191 346 102 16 chr9 114791914 114792041 -3070586 + L2 LINE L2 3126 3263 -9 2158 105 0 7 chr9 114792577 114792873 -3069754 - AluSc SINE Alu -15 294 1 250 189 57 0 chr9 114792984 114793037 -3069590 + L3 LINE CR1 1415 1470 -107 627 241 91 21 chr9 114794010 114794325 -3068302 - MLT1C LTR MaLR -18 372 38 254 229 101 37 chr9 114794522 114794631 -3067996 + L2 LINE L2 3123 3238 -34 1345 208 10 14 chr9 114796215 114796504 -3066123 + L1MB7 LINE L1 5890 6177 -7 2047 112 20 7 chr9 114796508 114796803 -3065824 - AluSq SINE Alu -14 299 1 627 310 9 13 chr9 114796845 114797074 -3065553 + L1M4 LINE L1 5 232 -6310 810 216 0 44 chr9 114797748 114797929 -3064698 + AluJb SINE Alu 133 305 -7 1867 83 4 0 chr9 114797947 114798188 -3064439 + AluSx SINE Alu 39 280 -32 396 0 0 0 chr9 114798188 114798232 -3064395 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 994 195 0 0 chr9 114798280 114798454 -3064173 - AluJb SINE Alu -2 310 137 1007 267 81 21 chr9 114798725 114799160 -3063467 - MLT1C LTR MaLR -1 466 6 1675 169 3 46 chr9 114799419 114799744 -3062883 + AluJb SINE Alu 1 311 -1 2419 84 0 0 chr9 114799744 114800053 -3062574 + AluSg SINE Alu 1 309 -1 1900 121 59 3 chr9 114800181 114800471 -3062156 - AluSx SINE Alu -6 306 1 786 345 60 15 chr9 114800471 114800992 -3061635 - HERV16 LTR ERVL -4367 629 86 889 151 9 0 chr9 114802684 114803044 -3059583 + (TGGA)n Simple_repeat Simple_repeat 1 363 0 1209 118 0 0 chr9 114803057 114803412 -3059215 + (TGGA)n Simple_repeat Simple_repeat 1 355 0 2075 163 74 36 chr9 114803980 114804376 -3058251 - L1MB7 LINE L1 -1 6183 5763 1973 115 22 56 chr9 114804376 114804697 -3057930 - AluSq SINE Alu -3 310 1 2075 163 74 36 chr9 114804697 114804797 -3057830 - L1MB7 LINE L1 -421 5763 5668 472 160 20 20 chr9 114805281 114805359 -3057268 + Charlie5 DNA MER1_type 16 96 -2528 1762 177 0 3 chr9 114805359 114805659 -3056968 - AluJo SINE Alu -13 299 1 472 160 20 20 chr9 114805659 114805680 -3056947 + Charlie5 DNA MER1_type 95 115 -2509 1263 235 9 6 chr9 114805682 114806001 -3056626 + Charlie5 DNA MER1_type 2233 2552 -60 1005 231 23 15 chr9 114806002 114806262 -3056365 + L1MB7 LINE L1 5806 6067 -117 702 200 11 4 chr9 114807302 114807580 -3055047 + (TGGA)n Simple_repeat Simple_repeat 1 280 0 606 207 0 0 chr9 114807646 114807825 -3054802 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 812 177 7 7 chr9 114807872 114808308 -3054319 + (TGGA)n Simple_repeat Simple_repeat 1 436 0 496 168 22 22 chr9 114808321 114808500 -3054127 + (TGGA)n Simple_repeat Simple_repeat 2 180 0 356 273 125 0 chr9 114809029 114809156 -3053471 + MIR SINE MIR 34 172 -70 2039 136 3 0 chr9 114810041 114810342 -3052285 - AluJb SINE Alu -10 302 1 805 183 0 0 chr9 114811279 114811410 -3051217 - FLAM_C SINE Alu -2 131 1 32 67 0 0 chr9 114813363 114813423 -3049204 + GC_rich Low_complexity Low_complexity 1 60 0 25 0 0 0 chr9 114813579 114813604 -3049023 + GC_rich Low_complexity Low_complexity 1 25 0 27 73 0 0 chr9 114813850 114813905 -3048722 + GC_rich Low_complexity Low_complexity 1 55 0 22 56 0 0 chr9 114814162 114814198 -3048429 + GC_rich Low_complexity Low_complexity 1 36 0 25 83 0 0 chr9 114814238 114814298 -3048329 + GC_rich Low_complexity Low_complexity 1 60 0 22 0 0 0 chr9 114814373 114814395 -3048232 + GC_rich Low_complexity Low_complexity 1 22 0 30 89 0 0 chr9 114814579 114814658 -3047969 + GC_rich Low_complexity Low_complexity 1 79 0 339 327 103 24 chr9 114816091 114816256 -3046371 + MIR SINE MIR 54 231 -31 1221 98 0 0 chr9 114816531 114816694 -3045933 - AluSg/x SINE Alu -13 299 137 2134 101 10 0 chr9 114816694 114816862 -3045765 - AluSg SINE Alu -11 299 125 2326 93 3 3 chr9 114816862 114817175 -3045452 - AluSp SINE Alu 0 313 1 2134 101 10 0 chr9 114817175 114817302 -3045325 - AluSg SINE Alu -185 125 1 1234 149 123 43 chr9 114817314 114817590 -3045037 - AluSg SINE Alu -12 298 1 185 296 0 0 chr9 114818248 114818302 -3044325 - L2 LINE L2 -11 3261 3208 216 321 62 36 chr9 114819166 114819180 -3043447 - L2 LINE L2 -5 3267 3255 276 54 36 18 chr9 114819180 114819236 -3043391 + (TAAA)n Simple_repeat Simple_repeat 3 59 0 216 321 62 36 chr9 114819236 114819333 -3043294 - L2 LINE L2 -17 3255 3153 1680 274 120 60 chr9 114819601 114820650 -3041977 - L1MC4 LINE L1 -143 7899 6915 2308 105 0 0 chr9 114820650 114820956 -3041671 + AluSx SINE Alu 1 306 -6 351 0 0 0 chr9 114820956 114820995 -3041632 + (CA)n Simple_repeat Simple_repeat 2 40 0 1680 274 120 60 chr9 114820995 114821158 -3041469 - L1MC4 LINE L1 -1126 6916 6613 501 211 16 0 chr9 114821174 114821297 -3041330 - Charlie5 DNA MER1_type 0 2624 2500 1190 202 0 0 chr9 114821300 114821513 -3041114 - AluSg/x SINE Alu -16 294 82 232 290 29 0 chr9 114821518 114821587 -3041040 + MER106A DNA MER1_type 2 72 -164 1796 163 3 0 chr9 114821598 114821880 -3040747 - AluJo SINE Alu -21 291 9 437 209 33 34 chr9 114821897 114821946 -3040681 + MER106A DNA MER1_type 127 175 -61 2173 116 0 7 chr9 114821946 114822248 -3040379 + AluSx SINE Alu 1 300 -12 437 209 33 34 chr9 114822248 114822363 -3040264 + MER106A DNA MER1_type 175 235 -1 225 0 0 0 chr9 114822408 114822433 -3040194 + (GGGTG)n Simple_repeat Simple_repeat 4 28 0 1180 236 7 23 chr9 114823203 114823513 -3039114 - MER58B DNA MER1_type 0 341 37 207 393 66 8 chr9 114824541 114824663 -3037964 + MIR SINE MIR 119 247 -15 197 336 56 40 chr9 114825247 114825372 -3037255 - L2 LINE L2 -223 3049 2923 366 311 81 14 chr9 114829267 114829415 -3033212 + MIR SINE MIR 47 204 -58 368 301 88 13 chr9 114829426 114829665 -3032962 + L1MB5 LINE L1 5847 6103 -71 2166 92 0 3 chr9 114830002 114830294 -3032333 - AluSg1 SINE Alu -18 291 1 420 244 73 0 chr9 114830350 114830473 -3032154 + ORSL DNA AcHobo 31 162 -113 331 272 56 64 chr9 114830553 114830678 -3031949 + MIR SINE MIR 29 152 -56 347 299 27 48 chr9 114831516 114831663 -3030964 + MIR3 SINE MIR 7 150 -58 250 208 143 0 chr9 114832124 114832201 -3030426 - L2 LINE L2 -227 3045 2958 235 283 27 12 chr9 114833371 114833473 -3029154 + MIR SINE MIR 83 146 -62 182 179 51 0 chr9 114834190 114834229 -3028398 + MIR SINE MIR 80 120 -142 23 0 0 0 chr9 114835194 114835217 -3027410 + AT_rich Low_complexity Low_complexity 1 23 0 304 156 13 39 chr9 114837827 114837904 -3024723 - L1MA5 LINE L1 -1 6299 6225 7881 164 23 26 chr9 114837904 114838266 -3024361 - L1MA4 LINE L1 -33 6267 5906 2176 123 0 0 chr9 114838266 114838574 -3024053 - AluSx SINE Alu -4 308 1 7881 164 23 26 chr9 114838574 114839167 -3023460 - L1MA4 LINE L1 -394 5906 5313 2120 121 3 3 chr9 114839167 114839472 -3023155 - AluSx SINE Alu -7 305 1 7881 164 23 26 chr9 114839472 114839488 -3023139 - L1MA4 LINE L1 -987 5313 5298 1887 121 19 23 chr9 114839488 114839795 -3022832 - AluJo SINE Alu 0 312 7 7881 164 23 26 chr9 114839795 114840705 -3021922 - L1MA4 LINE L1 -1002 5298 4373 1734 156 13 35 chr9 114840705 114841020 -3021607 - AluSx SINE Alu -4 308 1 7881 164 23 26 chr9 114841020 114841712 -3020915 - L1MA4 LINE L1 -1927 4373 3681 336 344 28 14 chr9 114841765 114841908 -3020719 + L1MC4 LINE L1 6588 6705 -1337 1503 158 8 0 chr9 114841912 114842146 -3020481 - AluJb SINE Alu -76 236 1 492 18 0 0 chr9 114842154 114842211 -3020416 + (TA)n Simple_repeat Simple_repeat 2 58 0 418 285 32 81 chr9 114842386 114842572 -3020055 + MER104 DNA MER2_type 4 180 0 741 266 104 42 chr9 114846231 114846615 -3016012 - MLT1C LTR MaLR -16 451 44 206 62 31 0 chr9 114847408 114847440 -3015187 + (TGAA)n Simple_repeat Simple_repeat 2 34 0 8208 44 8 1 chr9 114847486 114848448 -3014179 - LTR5 LTR ERVK 0 969 1 180 238 0 24 chr9 114849059 114849101 -3013526 + MIR SINE MIR 113 153 -109 217 222 0 0 chr9 114849190 114849235 -3013392 + (TGGG)n Simple_repeat Simple_repeat 3 47 0 222 91 0 0 chr9 114849741 114849774 -3012853 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 208 255 0 0 chr9 114850106 114850153 -3012474 - MIR SINE MIR -76 132 86 386 327 5 21 chr9 114850395 114850853 -3011774 + G-rich Low_complexity Low_complexity 1 450 0 316 350 6 17 chr9 114851396 114851573 -3011054 + (CA)n Simple_repeat Simple_repeat 1 175 0 310 174 4 1 chr9 114853016 114853084 -3009543 - MLT1D LTR MaLR -76 493 330 543 261 147 49 chr9 114853351 114853577 -3009050 - MLT1D LTR MaLR -123 382 109 2209 104 0 3 chr9 114853577 114853876 -3008751 - AluSg SINE Alu -12 298 1 543 261 147 49 chr9 114853876 114853997 -3008630 - MLT1D LTR MaLR -396 109 1 1077 263 61 28 chr9 114854002 114854363 -3008264 + MLT1A2 LTR MaLR 1 373 -1 214 294 0 0 chr9 114854368 114854419 -3008208 + MIR SINE MIR 96 146 -62 268 267 0 0 chr9 114854528 114854588 -3008039 - MIR SINE MIR -100 162 103 1921 135 0 3 chr9 114858109 114858391 -3004236 + AluSx SINE Alu 3 283 -29 2258 88 3 0 chr9 114858481 114858776 -3003851 - AluSq SINE Alu -13 300 5 259 116 0 23 chr9 114858807 114858850 -3003777 + MIR SINE MIR 108 149 -113 213 94 0 0 chr9 114859170 114859202 -3003425 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 288 333 19 0 chr9 114859204 114859309 -3003318 - L2 LINE L2 -1 3271 3165 257 213 0 0 chr9 114860244 114860291 -3002336 - MIR SINE MIR -118 144 98 469 349 7 0 chr9 114860996 114861142 -3001485 + MIR SINE MIR 1 147 -115 247 328 17 52 chr9 114861728 114861844 -3000783 + MIR SINE MIR 27 138 -70 248 296 92 0 chr9 114863101 114863199 -2999428 + MIR SINE MIR 49 155 -107 413 290 37 23 chr9 114863734 114863948 -2998679 - MLT1C LTR MaLR -12 455 239 846 195 70 77 chr9 114864031 114864294 -2998333 - L1MB3 LINE L1 -1 6182 5920 2244 74 0 24 chr9 114864294 114864592 -2998035 + AluSp SINE Alu 1 291 -22 846 195 70 77 chr9 114864592 114864626 -2998001 - L1MB3 LINE L1 -263 5920 5887 591 219 94 47 chr9 114864683 114864766 -2997861 - MER3 DNA MER1_type -3 206 128 2372 89 0 0 chr9 114864766 114865068 -2997559 - AluSx SINE Alu -10 302 1 591 219 94 47 chr9 114865068 114865176 -2997451 - MER3 DNA MER1_type -81 128 6 1003 207 16 58 chr9 114865176 114865485 -2997142 + L1MC4 LINE L1 7600 7895 -147 264 59 0 0 chr9 114865485 114865519 -2997108 + (CA)n Simple_repeat Simple_repeat 2 35 0 201 295 58 65 chr9 114866713 114866852 -2995775 + MIR SINE MIR 12 149 -113 199 331 79 8 chr9 114867378 114867505 -2995122 + MIR SINE MIR 57 192 -70 652 162 6 6 chr9 114868624 114868797 -2993830 + (CA)n Simple_repeat Simple_repeat 2 174 0 185 65 32 0 chr9 114868816 114868847 -2993780 + (CA)n Simple_repeat Simple_repeat 2 33 0 442 262 18 6 chr9 114868867 114869031 -2993596 + (CA)n Simple_repeat Simple_repeat 1 166 0 199 286 83 53 chr9 114869609 114869655 -2992972 - MIR SINE MIR -105 157 114 2014 152 0 0 chr9 114869655 114869958 -2992669 + AluSx SINE Alu 1 303 -9 199 286 83 53 chr9 114869958 114870044 -2992583 - MIR SINE MIR -148 114 21 * 365 307 104 0 chr9 114869985 114870148 -2992479 + MIR SINE MIR 8 187 -75 2471 197 58 28 chr9 114871311 114871848 -2990779 - MLT2B3 LTR ERVL -1 553 1 1190 80 19 7 chr9 114872052 114872409 -2990218 + (TCCA)n Simple_repeat Simple_repeat 1 540 0 1086 94 11 17 chr9 114872424 114872604 -2990023 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 1018 97 29 0 chr9 114872624 114872799 -2989828 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 182 341 24 56 chr9 114872807 114872933 -2989694 - L2 LINE L2 -1 3271 3150 206 208 19 0 chr9 114874720 114874773 -2987854 + GA-rich Low_complexity Low_complexity 2 55 0 237 234 22 60 chr9 114875838 114876022 -2986605 + GA-rich Low_complexity Low_complexity 2 178 0 222 277 12 48 chr9 114877118 114877201 -2985426 + MIR SINE MIR 96 175 -87 372 138 0 0 chr9 114878007 114878072 -2984555 + (CA)n Simple_repeat Simple_repeat 1 65 0 313 143 0 0 chr9 114878729 114878778 -2983849 - L1 LINE L1 -1205 4941 4893 324 281 201 0 chr9 114878900 114879039 -2983588 + MER117 DNA MER1_type 31 197 0 325 258 129 38 chr9 114879533 114879742 -2982885 - L2 LINE L2 -217 3055 2828 288 255 60 67 chr9 114879972 114880121 -2982506 + MIR3 SINE MIR 25 172 -36 234 0 0 0 chr9 114880213 114880239 -2982388 + (T)n Simple_repeat Simple_repeat 1 26 0 1930 141 0 3 chr9 114880722 114881005 -2981622 + AluSx SINE Alu 1 282 -30 1586 245 53 0 chr9 114881037 114881454 -2981173 - L1MB5 LINE L1 -25 6149 5711 1932 121 10 26 chr9 114881750 114882063 -2980564 + AluSx SINE Alu 1 308 -4 5760 52 4 5 chr9 114882086 114882873 -2979754 - L1PA6 LINE L1 -3 6151 5366 2170 198 31 14 chr9 114882857 114883679 -2978948 - L1MB5 LINE L1 -500 5683 4853 * 241 204 0 0 chr9 114884564 114884613 -2978014 - L1 LINE L1 -866 5280 5232 643 186 41 55 chr9 114884739 114884884 -2977743 - FLAM_C SINE Alu 0 143 1 210 118 0 0 chr9 114884914 114884948 -2977679 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 2194 79 4 0 chr9 114887167 114887484 -2975143 + AluSg SINE Alu 1 318 0 552 339 48 9 chr9 114887511 114887738 -2974889 + MIR SINE MIR 8 243 -19 258 292 45 11 chr9 114888500 114888589 -2974038 + MIR SINE MIR 62 153 -55 321 296 41 10 chr9 114889283 114889381 -2973246 - MIR3 SINE MIR -49 159 59 307 250 21 24 chr9 114890147 114890436 -2972191 + (TG)n Simple_repeat Simple_repeat 1 288 0 339 200 22 49 chr9 114890473 114890658 -2971969 + (TG)n Simple_repeat Simple_repeat 1 180 0 766 147 34 18 chr9 114891411 114891686 -2970941 + C-rich Low_complexity Low_complexity 1 279 0 978 265 49 3 chr9 114891790 114892077 -2970550 - L1MB5 LINE L1 -274 5900 5601 1132 116 0 23 chr9 114894209 114894382 -2968245 + L1PA11 LINE L1 6006 6174 0 358 322 7 13 chr9 114894717 114894869 -2967758 + L1MA10 LINE L1 6175 6325 -9 335 319 43 0 chr9 114894892 114895033 -2967594 - MER3 DNA MER1_type -60 149 3 275 217 76 76 chr9 114895435 114895449 -2967178 + MIR SINE MIR 54 67 -141 2500 43 0 37 chr9 114895449 114895772 -2966855 - AluY SINE Alu 0 311 1 275 217 76 76 chr9 114895772 114895849 -2966778 + MIR SINE MIR 66 145 -63 568 330 86 6 chr9 114895939 114896290 -2966337 - MLT1J LTR MaLR -5 506 128 180 300 100 0 chr9 114896741 114896801 -2965826 - MIR SINE MIR -10 252 187 352 279 99 0 chr9 114896872 114896983 -2965644 - MIR SINE MIR -119 143 22 2093 111 3 13 chr9 114900239 114900546 -2962081 - AluJb SINE Alu -8 304 1 2322 66 6 28 chr9 114900839 114901157 -2961470 - AluY SINE Alu 0 311 1 1094 188 12 98 chr9 114903046 114903205 -2959422 - MLT1B LTR MaLR -84 306 190 2099 123 3 13 chr9 114903205 114903513 -2959114 - AluSq SINE Alu -7 306 2 1094 188 12 98 chr9 114903513 114903688 -2958939 - MLT1B LTR MaLR -200 190 1 251 356 93 8 chr9 114904021 114904139 -2958488 - MIR SINE MIR -31 231 104 362 260 58 0 chr9 114904780 114904939 -2957688 - MLT1H1 LTR MaLR -339 210 1 1830 131 39 36 chr9 114905148 114905204 -2957423 - MER39B LTR ERV1 0 653 599 2088 105 0 3 chr9 114905204 114905533 -2957094 + AluSx SINE Alu 1 328 0 1830 131 39 36 chr9 114905533 114905971 -2956656 - MER39B LTR ERV1 -54 599 84 1683 138 3 104 chr9 114906069 114906249 -2956378 - AluJo SINE Alu 0 312 115 2510 68 0 0 chr9 114906249 114906559 -2956068 - AluY SINE Alu 0 311 2 1683 138 3 104 chr9 114906559 114906590 -2956037 - AluJo SINE Alu -197 115 82 1880 133 20 23 chr9 114906590 114906891 -2955736 + AluSx SINE Alu 1 300 -12 1683 138 3 104 chr9 114906891 114907025 -2955602 - AluJo SINE Alu -230 82 1 292 326 33 55 chr9 114907117 114907179 -2955448 + MLT1H1 LTR MaLR 1 63 -492 2316 64 7 0 chr9 114907179 114907476 -2955151 + AluY SINE Alu 1 299 -12 292 326 33 55 chr9 114907476 114907594 -2955033 + MLT1H1 LTR MaLR 63 177 -378 2115 125 0 16 chr9 114907673 114907986 -2954641 - AluSx SINE Alu -4 308 1 2464 42 0 0 chr9 114909183 114909470 -2953157 - AluY SINE Alu -21 290 4 2164 119 3 0 chr9 114909802 114910113 -2952514 - AluSx SINE Alu 0 312 1 1913 14 0 0 chr9 114910141 114910355 -2952272 + SVA Other Other 1173 1386 0 1429 228 89 19 chr9 114910457 114910886 -2951741 - L1MB7 LINE L1 0 6184 5726 333 364 73 49 chr9 114910889 114911136 -2951491 - HAL1 LINE L1 0 2507 2255 324 289 106 34 chr9 114912218 114912426 -2950201 + MIR SINE MIR 22 244 -18 221 139 23 0 chr9 114912950 114912993 -2949634 + CT-rich Low_complexity Low_complexity 4 47 0 212 163 0 61 chr9 114914064 114914113 -2948514 + C-rich Low_complexity Low_complexity 5 50 0 205 274 19 70 chr9 114914065 114914222 -2948405 + (CACCC)n Simple_repeat Simple_repeat 3 151 0 * 366 273 0 50 chr9 114914180 114914319 -2948308 + C-rich Low_complexity Low_complexity 6 137 0 334 126 46 46 chr9 114914417 114914592 -2948035 + CT-rich Low_complexity Low_complexity 1 175 0 666 183 8 31 chr9 114914599 114914858 -2947769 + C-rich Low_complexity Low_complexity 1 253 0 255 218 24 24 chr9 114914860 114915078 -2947549 + CT-rich Low_complexity Low_complexity 1 218 0 210 100 0 100 chr9 114914876 114914926 -2947701 + (CCCCCT)n Simple_repeat Simple_repeat 5 49 0 * 614 239 75 18 chr9 114915514 114915740 -2946887 - MLT1J LTR MaLR -174 337 99 1112 209 34 74 chr9 114917942 114918292 -2944335 - L1MB3 LINE L1 0 6183 5848 202 150 0 50 chr9 114918526 114918566 -2944061 + (CGGGGG)n Simple_repeat Simple_repeat 2 39 0 316 247 35 0 chr9 114918747 114918832 -2943795 + L1MB3 LINE L1 6067 6154 -29 280 213 163 12 chr9 114919868 114919948 -2942679 + MIR SINE MIR 21 112 -150 196 244 139 12 chr9 114920610 114920696 -2941931 + MER5A DNA MER1_type 32 128 -61 241 309 31 0 chr9 114921671 114921768 -2940859 - L1ME3A LINE L1 -5 6165 6066 1958 109 6 58 chr9 114922167 114922478 -2940149 - AluSc SINE Alu -14 295 1 250 189 57 0 chr9 114922589 114922642 -2939985 + L3 LINE CR1 1415 1470 -107 627 241 91 21 chr9 114923616 114923931 -2938696 - MLT1C LTR MaLR -18 372 38 254 229 101 37 chr9 114924128 114924237 -2938390 + L2 LINE L2 3123 3238 -34 362 229 90 16 chr9 114925519 114925641 -2936986 - L1MC3 LINE L1 -19 7766 7636 698 256 108 8 chr9 114926409 114926667 -2935960 + L1MC3 LINE L1 7483 7766 -19 254 229 101 37 chr9 114927949 114928058 -2934569 - L2 LINE L2 -34 3238 3123 627 241 91 21 chr9 114928255 114928570 -2934057 + MLT1C LTR MaLR 38 372 -18 250 189 57 0 chr9 114929544 114929597 -2933030 - L3 LINE CR1 -107 1470 1415 1958 109 6 58 chr9 114929708 114930019 -2932608 + AluSc SINE Alu 1 295 -14 241 309 31 0 chr9 114930418 114930515 -2932112 + L1ME3A LINE L1 6066 6165 -5 196 244 139 12 chr9 114931490 114931576 -2931051 - MER5A DNA MER1_type -61 128 32 280 213 163 12 chr9 114932238 114932318 -2930309 - MIR SINE MIR -150 112 21 316 247 35 0 chr9 114933354 114933439 -2929188 - L1MB3 LINE L1 -29 6154 6067 202 150 0 50 chr9 114933620 114933660 -2928967 + (CCCCCG)n Simple_repeat Simple_repeat 2 39 0 1112 209 34 74 chr9 114933894 114934244 -2928383 + L1MB3 LINE L1 5848 6183 0 1789 186 0 13 chr9 114936700 114937012 -2925615 - AluJo SINE Alu -4 308 1 1949 128 34 3 chr9 114937048 114937344 -2925283 + AluSq SINE Alu 1 305 -8 499 134 196 10 chr9 114937345 114937442 -2925185 - AluJb SINE Alu -197 115 1 283 272 241 6 chr9 114937807 114937965 -2924662 - MIR SINE MIR -29 233 39 260 346 99 12 chr9 114939277 114939439 -2923188 - MIR SINE MIR -85 177 2 2253 102 0 7 chr9 114939511 114939814 -2922813 - AluSx SINE Alu -11 301 1 223 257 0 14 chr9 114940688 114940758 -2921869 + A-rich Low_complexity Low_complexity 4 72 0 422 292 38 19 chr9 114940769 114940978 -2921649 + L1MEd LINE L1 895 1107 -5012 180 369 0 0 chr9 114941387 114941452 -2921175 - L2 LINE L2 -56 3216 3152 201 304 109 43 chr9 114941631 114941769 -2920858 + MER5A DNA MER1_type 19 165 -24 210 336 8 15 chr9 114943731 114943862 -2918765 + (CA)n Simple_repeat Simple_repeat 1 130 0 365 180 26 8 chr9 114944396 114944493 -2918134 + MIR SINE MIR 47 143 -65 2311 81 0 0 chr9 114946020 114946315 -2916312 - AluY SINE Alu -16 295 1 231 61 0 0 chr9 114946682 114946715 -2915912 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 290 312 124 4 chr9 114947518 114947719 -2914908 + MIR SINE MIR 24 248 -14 2035 212 96 43 chr9 114947742 114948317 -2914310 - MER77 LTR ERV1 0 605 1 828 189 171 36 chr9 114949482 114949757 -2912870 + MLT1D LTR MaLR 176 487 -18 1723 215 67 0 chr9 114950029 114950475 -2912152 - L1MB5 LINE L1 0 6174 5699 366 331 129 0 chr9 114950831 114951009 -2911618 - L3 LINE CR1 -106 1471 1271 348 287 0 0 chr9 114951970 114952127 -2910500 + (TG)n Simple_repeat Simple_repeat 1 157 0 485 316 17 0 chr9 114952160 114952334 -2910293 + (TG)n Simple_repeat Simple_repeat 1 177 0 184 387 84 0 chr9 114953295 114953414 -2909213 + MIR SINE MIR 129 257 -5 229 322 0 23 chr9 114953887 114953974 -2908653 + CT-rich Low_complexity Low_complexity 2 86 0 529 320 6 0 chr9 114954000 114954178 -2908449 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 1164 148 2 6 chr9 114954198 114954675 -2907952 + (TCCA)n Simple_repeat Simple_repeat 1 652 0 337 289 156 7 chr9 114954860 114954995 -2907632 + MIR SINE MIR 80 234 -28 262 253 76 0 chr9 114955035 114955114 -2907513 + MIR SINE MIR 108 192 -70 276 231 65 0 chr9 114955715 114955787 -2906840 - MIR SINE MIR -58 150 84 306 328 66 0 chr9 114956071 114956193 -2906434 + MIR SINE MIR 16 145 -117 1315 210 93 66 chr9 114956348 114956800 -2905827 + MLT1C LTR MaLR 4 467 0 2541 45 0 10 chr9 114958032 114958340 -2904287 - AluY SINE Alu -6 305 1 388 363 38 0 chr9 114958524 114958684 -2903943 - MIR SINE MIR -40 222 57 317 261 37 0 chr9 114960101 114960248 -2902379 + MIR SINE MIR 26 181 -77 299 243 39 68 chr9 114960578 114960681 -2901946 + MER117 DNA MER1_type 98 197 0 811 152 15 8 chr9 114962831 114962963 -2899664 + FLAM_C SINE Alu 1 133 -10 294 230 27 14 chr9 114963784 114963858 -2898769 - MER81 DNA DNA -32 82 8 240 242 189 13 chr9 114964528 114964646 -2897981 - MIR SINE MIR -35 173 17 2248 88 3 3 chr9 114966587 114966884 -2895743 + AluSg SINE Alu 1 297 -13 501 313 0 11 chr9 114966961 114967143 -2895484 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 419 226 11 17 chr9 114967156 114967333 -2895294 + (TCCA)n Simple_repeat Simple_repeat 4 179 0 197 333 169 0 chr9 114967371 114967554 -2895073 - L2 LINE L2 -204 3068 2855 2361 79 0 9 chr9 114967942 114968257 -2894370 - AluSx SINE Alu 0 312 1 485 318 38 13 chr9 114968499 114968672 -2893955 - MIR SINE MIR -65 143 5 271 257 101 9 chr9 114968732 114968841 -2893786 + MER117 DNA MER1_type 61 179 -18 212 155 52 17 chr9 114970228 114970286 -2892341 + C-rich Low_complexity Low_complexity 3 62 0 329 237 83 5 chr9 114970425 114970593 -2892034 - MER34 LTR ERV1 -2 746 433 2146 89 0 24 chr9 114972823 114973116 -2889511 + AluSq SINE Alu 15 300 -13 183 281 88 0 chr9 114973159 114973216 -2889411 - MIR3 SINE MIR -38 170 109 616 304 47 5 chr9 114973642 114973856 -2888771 - MIR SINE MIR -18 244 22 2392 86 0 6 chr9 114974202 114974517 -2888110 - AluSq SINE Alu 0 313 1 2000 121 15 27 chr9 114975029 114975367 -2887260 - THE1C LTR MaLR -41 334 1 268 405 55 0 chr9 114975650 114975813 -2886814 - L2 LINE L2 -1 3271 3100 447 295 32 75 chr9 114975821 114975880 -2886747 - MER33 DNA MER1_type -2319 266 206 625 199 86 33 chr9 114975880 114976031 -2886596 + FRAM SINE Alu 1 159 -7 447 295 32 75 chr9 114976031 114976249 -2886378 - MER33 DNA MER1_type -2379 206 1 195 297 84 58 chr9 114976580 114976735 -2885892 - L2 LINE L2 -96 3176 3018 320 353 17 0 chr9 114979542 114979658 -2882969 + MIR3 SINE MIR 90 207 -1 277 309 40 10 chr9 114980888 114981009 -2881618 - MIR SINE MIR -57 151 26 183 206 191 15 chr9 114981177 114981245 -2881382 - L2 LINE L2 -211 3061 2982 211 318 55 45 chr9 114982186 114982296 -2880331 + L2 LINE L2 3201 3311 -2 263 309 0 31 chr9 114982345 114982442 -2880185 + L2 LINE L2 2976 3069 -203 436 271 43 29 chr9 114982757 114982897 -2879730 - MIR SINE MIR -71 191 50 232 298 128 14 chr9 114983077 114983218 -2879409 + MIR SINE MIR 28 184 -78 192 125 0 0 chr9 114983265 114983297 -2879330 + (TCTG)n Simple_repeat Simple_repeat 3 34 0 2456 55 6 6 chr9 114985142 114985453 -2877174 + AluY SINE Alu 1 311 0 191 346 102 16 chr9 114985640 114985767 -2876860 + L2 LINE L2 3126 3263 -9 2325 42 0 18 chr9 114986303 114986589 -2876038 - AluY SINE Alu -15 296 16 1303 134 0 0 chr9 114986722 114986908 -2875719 + AluSq SINE Alu 1 186 -127 690 0 117 0 chr9 114986913 114987031 -2875596 + L1MEc LINE L1 649 746 -5324 2579 209 27 45 chr9 114987031 114987382 -2875245 - MLT2B3 LTR ERVL -3 551 212 2310 80 0 7 chr9 114987382 114987684 -2874943 - AluY SINE Alu -11 300 1 2579 209 27 45 chr9 114987684 114987893 -2874734 - MLT2B3 LTR ERVL -342 212 1 690 0 117 0 chr9 114987893 114988131 -2874496 + L1MEc LINE L1 746 979 -5091 899 147 0 0 chr9 114988132 114988268 -2874359 - AluSq SINE Alu -4 309 174 1049 62 0 0 chr9 114988268 114988396 -2874231 - AluSq SINE Alu -185 128 1 322 285 28 56 chr9 114988397 114988576 -2874051 + L1ME2 LINE L1 966 1139 -4941 1349 243 51 2 chr9 114988592 114989003 -2873624 + L1ME2 LINE L1 4391 4821 -1259 1078 144 0 12 chr9 114989008 114989181 -2873446 - FRAM SINE Alu -6 170 1 1848 251 61 63 chr9 114989183 114990396 -2872231 + L1ME2 LINE L1 4825 6030 -68 318 259 36 18 chr9 114996341 114996453 -2866174 + MIR SINE MIR 36 149 -59 201 108 0 54 chr9 114999213 114999250 -2863377 + (TGGGGG)n Simple_repeat Simple_repeat 3 37 0 356 270 108 27 chr9 115000418 115000566 -2862061 - MER5B DNA MER1_type -1 177 18 183 281 47 16 chr9 115001624 115001688 -2860939 - L2 LINE L2 -20 3293 3228 283 292 34 11 chr9 115002055 115002144 -2860483 - L3 LINE CR1 -501 1076 986 206 286 48 0 chr9 115002815 115002878 -2859749 - MIR3 SINE MIR -31 177 112 420 216 0 0 chr9 115003411 115003513 -2859114 + (TG)n Simple_repeat Simple_repeat 2 103 0 543 200 172 69 chr9 115003766 115004126 -2858501 - MLT1C LTR MaLR -20 447 51 209 374 40 0 chr9 115004321 115004420 -2858207 + MIR SINE MIR 22 124 -84 201 274 0 0 chr9 115005684 115005735 -2856892 + MIR SINE MIR 109 159 -103 189 0 0 0 chr9 115010226 115010247 -2852380 + (CAGGG)n Simple_repeat Simple_repeat 3 23 0 213 204 0 0 chr9 115010570 115010614 -2852013 + L2 LINE L2 2712 2755 -559 209 261 62 0 chr9 115010954 115011019 -2851608 + L2 LINE L2 3214 3282 -31 369 353 33 7 chr9 115011805 115011958 -2850669 - L3 LINE CR1 -6 1571 1415 181 289 66 53 chr9 115012095 115012171 -2850456 - L2 LINE L2 0 3272 3196 242 344 109 0 chr9 115012852 115012980 -2849647 + MIR3 SINE MIR 9 150 -58 421 213 16 33 chr9 115013128 115013311 -2849316 + (CA)n Simple_repeat Simple_repeat 1 180 0 231 159 18 35 chr9 115013348 115013461 -2849166 + (CA)n Simple_repeat Simple_repeat 1 111 0 435 175 27 49 chr9 115013556 115013739 -2848888 + (CA)n Simple_repeat Simple_repeat 1 179 0 194 105 26 0 chr9 115014215 115014253 -2848374 + G-rich Low_complexity Low_complexity 2 40 0 972 239 5 18 chr9 115014649 115014867 -2847760 - MER20 DNA MER1_type -2 217 3 1983 177 41 19 chr9 115014882 115015294 -2847333 - MLT1C LTR MaLR -46 421 1 1535 217 46 49 chr9 115015403 115015813 -2846814 + LTR2 LTR ERV1 41 449 0 1433 194 75 68 chr9 115016233 115016729 -2845898 + MLT1D LTR MaLR 7 505 0 688 231 58 9 chr9 115017027 115017316 -2845311 + MER54A LTR ERVL 10 502 -344 1025 159 6 2 chr9 115017324 115017646 -2844981 + GA-rich Low_complexity Low_complexity 1 504 0 1678 185 54 51 chr9 115017648 115017972 -2844655 + MER54A LTR ERVL 473 800 -101 2260 103 3 0 chr9 115017972 115018283 -2844344 + AluSx SINE Alu 1 312 0 1678 185 54 51 chr9 115018283 115018386 -2844241 + MER54A LTR ERVL 800 901 0 24 0 0 0 chr9 115018719 115018743 -2843884 + AT_rich Low_complexity Low_complexity 1 24 0 2286 88 0 0 chr9 115018910 115019207 -2843420 + AluSg SINE Alu 1 297 -13 2289 92 3 0 chr9 115019466 115019772 -2842855 - AluSx SINE Alu -5 307 1 405 249 50 100 chr9 115019774 115020035 -2842592 - HAL1b LINE L1 -771 577 330 371 347 133 21 chr9 115020182 115020513 -2842114 - L1MEd LINE L1 -5742 377 10 1852 174 0 16 chr9 115020655 115020966 -2841661 + AluJo SINE Alu 1 306 -6 223 244 0 0 chr9 115021025 115021070 -2841557 + GA-rich Low_complexity Low_complexity 3 47 0 299 232 103 8 chr9 115021268 115021486 -2841141 + MLT1B LTR MaLR 66 356 -34 234 151 57 38 chr9 115021523 115021629 -2840998 + (CGGGG)n Simple_repeat Simple_repeat 1 108 0 359 174 0 46 chr9 115021639 115021748 -2840879 + GA-rich Low_complexity Low_complexity 1 104 0 231 103 0 0 chr9 115022051 115022090 -2840537 + (TTTTG)n Simple_repeat Simple_repeat 3 41 0 1391 160 14 69 chr9 115022095 115022383 -2840244 - AluJo SINE Alu -34 278 7 205 172 0 47 chr9 115022965 115023029 -2839598 + A-rich Low_complexity Low_complexity 1 61 0 201 39 0 0 chr9 115024931 115024957 -2837670 + (TG)n Simple_repeat Simple_repeat 2 27 0 523 307 63 22 chr9 115025313 115025834 -2836793 + L1MEc LINE L1 1029 1518 -4908 297 207 37 24 chr9 115025806 115025888 -2836739 + L1MC4 LINE L1 7067 7149 -1173 * 2529 233 107 18 chr9 115025872 115026752 -2835875 + L1MC4 LINE L1 7080 8037 -5 280 289 42 21 chr9 115026781 115026971 -2835656 + L1MEc LINE L1 1835 2028 -4579 930 103 0 32 chr9 115027000 115027132 -2835495 - L1P2 LINE L1 -532 5622 5494 3394 49 40 13 chr9 115027132 115027552 -2835075 + L1PA5 LINE L1 5691 6134 -20 285 51 0 0 chr9 115027552 115027591 -2835036 + (TA)n Simple_repeat Simple_repeat 2 40 0 3394 49 40 13 chr9 115027591 115027613 -2835014 + L1PA5 LINE L1 6134 6154 0 617 287 106 24 chr9 115027613 115028214 -2834413 + L1MEc LINE L1 2096 2710 -3716 930 103 0 32 chr9 115027613 115027635 -2834992 - L1P2 LINE L1 -660 5494 5473 180 394 21 11 chr9 115028271 115028365 -2834262 - MER5A DNA MER1_type -94 95 1 293 270 141 27 chr9 115028956 115029150 -2833477 + MIR SINE MIR 15 226 -36 196 74 0 0 chr9 115030576 115030603 -2832024 + L2 LINE L2 3225 3251 -21 360 397 49 0 chr9 115031479 115031663 -2830964 + L1ME4a LINE L1 5623 5815 -306 2248 117 0 0 chr9 115031861 115032168 -2830459 - AluSx SINE Alu -5 307 1 335 322 101 10 chr9 115033203 115033402 -2829225 + L2 LINE L2 2830 3046 -267 392 206 54 0 chr9 115033437 115033529 -2829098 + L1M4 LINE L1 3666 3762 -2384 511 273 13 45 chr9 115033540 115033694 -2828933 - Tigger3b DNA MER2_type 0 1232 1084 3407 150 281 11 chr9 115033969 115034861 -2827766 - Tigger3b DNA MER2_type -98 1133 1 406 239 22 0 chr9 115034881 115034973 -2827654 + L1M4 LINE L1 3768 3861 -2285 377 314 0 42 chr9 115037349 115037467 -2825160 - MIR3 SINE MIR -26 182 70 183 200 0 0 chr9 115040992 115041032 -2821595 + L2 LINE L2 3028 3067 -205 * 186 317 40 30 chr9 115041015 115041116 -2821511 - L2 LINE L2 -25 3288 3187 241 323 133 6 chr9 115041779 115041937 -2820690 + MER117 DNA MER1_type 3 180 -17 21 0 0 0 chr9 115042900 115042921 -2819706 + GC_rich Low_complexity Low_complexity 1 21 0 301 248 85 39 chr9 115042935 115043088 -2819539 + L1ME4a LINE L1 5959 6118 -3 203 156 0 0 chr9 115043844 115043876 -2818751 + (TG)n Simple_repeat Simple_repeat 1 32 0 1714 168 27 0 chr9 115044683 115044975 -2817652 - AluJb SINE Alu -11 301 2 261 346 15 8 chr9 115045444 115045574 -2817053 + L1ME2 LINE L1 6012 6142 -22 210 307 23 23 chr9 115046951 115047039 -2815588 + (CGTG)n Simple_repeat Simple_repeat 3 90 0 392 298 13 38 chr9 115047626 115047784 -2814843 + GA-rich Low_complexity Low_complexity 1 154 0 302 177 43 71 chr9 115048535 115048676 -2813951 + (CCCCAG)n Simple_repeat Simple_repeat 4 140 0 230 304 48 90 chr9 115049361 115049673 -2812954 + L2 LINE L2 2928 3226 -46 2055 125 10 0 chr9 115050969 115051273 -2811354 - AluSx SINE Alu -5 307 1 472 234 164 97 chr9 115052545 115052771 -2809856 + L1MEd LINE L1 944 1184 -4935 17803 123 50 14 chr9 115052783 115056023 -2806604 + L1M1 LINE L1 492 3853 -3712 2469 166 16 59 chr9 115056015 115056378 -2806249 + L1M1 LINE L1 5033 5361 -2204 * 2462 80 0 0 chr9 115056378 115056689 -2805938 + AluY SINE Alu 1 311 0 2469 166 16 59 chr9 115056689 115056938 -2805689 + L1M1 LINE L1 5361 5619 -1946 1358 77 26 0 chr9 115056938 115057122 -2805505 + L1MA1 LINE L1 6104 6302 0 5670 214 79 44 chr9 115057143 115057523 -2805104 + L1MEd LINE L1 1183 1548 -4581 1128 256 113 27 chr9 115057523 115057859 -2804768 - MLT1A1 LTR MaLR 0 365 1 5670 214 79 44 chr9 115057859 115058589 -2804038 + L1MEd LINE L1 1548 2251 -3878 2183 89 0 7 chr9 115058589 115058871 -2803756 + AluSg SINE Alu 1 280 -30 5670 214 79 44 chr9 115058871 115058909 -2803718 + L1MEd LINE L1 2251 2286 -3843 180 0 0 0 chr9 115058909 115058929 -2803698 + (TA)n Simple_repeat Simple_repeat 1 20 0 5670 214 79 44 chr9 115058929 115059325 -2803302 + L1MEd LINE L1 2286 2667 -3462 7676 49 4 8 chr9 115059325 115060279 -2802348 - SVA Other Other 0 1386 437 5670 214 79 44 chr9 115060279 115060842 -2801785 + L1MEd LINE L1 2667 3209 -2920 2073 108 23 7 chr9 115060842 115061149 -2801478 + AluSx SINE Alu 1 312 0 5670 214 79 44 chr9 115061149 115061533 -2801094 + L1MEd LINE L1 3209 3798 -2331 2185 94 7 13 chr9 115062517 115062824 -2799803 - AluY SINE Alu -6 305 1 231 308 211 0 chr9 115063396 115063500 -2799127 + MIR SINE MIR 118 243 -19 907 124 26 57 chr9 115063975 115064099 -2798528 + L1 LINE L1 3629 3746 -2400 2158 94 0 7 chr9 115064099 115064396 -2798231 + AluSx SINE Alu 1 295 -17 907 124 26 57 chr9 115064396 115064464 -2798163 + L1 LINE L1 3746 3815 -2331 222 244 26 90 chr9 115064578 115064656 -2797971 - MIR3 SINE MIR -54 154 82 320 289 60 80 chr9 115065268 115065469 -2797158 + L2 LINE L2 3059 3255 -17 194 296 93 46 chr9 115066029 115066137 -2796490 + L3 LINE CR1 1418 1530 -47 264 343 0 19 chr9 115067780 115067888 -2794739 + MIR SINE MIR 56 161 -101 3441 123 22 67 chr9 115068106 115068158 -2794469 - LTR43 LTR ERV1 -2 600 547 2227 106 0 7 chr9 115068158 115068486 -2794141 + AluSx SINE Alu 1 312 0 3441 123 22 67 chr9 115068486 115068795 -2793832 - LTR43 LTR ERV1 -55 547 276 2313 86 3 0 chr9 115068795 115069096 -2793531 - AluSp SINE Alu -11 302 1 3441 123 22 67 chr9 115069096 115069360 -2793267 - LTR43 LTR ERV1 -326 276 2 1152 60 0 0 chr9 115070375 115070524 -2792103 + (TGAA)n Simple_repeat Simple_repeat 2 150 0 210 357 31 0 chr9 115071182 115071280 -2791347 + L3 LINE CR1 1250 1350 -227 618 244 6 13 chr9 115071537 115071693 -2790934 + MER63A DNA MER1_type 56 210 0 229 267 273 19 chr9 115071856 115072017 -2790610 + MIR SINE MIR 49 250 -12 228 290 24 17 chr9 115073223 115073326 -2789301 - MIR3 SINE MIR -50 158 80 366 282 157 24 chr9 115074523 115074817 -2787810 + L2 LINE L2 2921 3253 -19 1683 176 6 31 chr9 115075470 115075789 -2786838 - AluJo SINE Alu -1 311 1 511 204 178 6 chr9 115075790 115075947 -2786680 - MER3 DNA MER1_type -21 188 5 419 297 234 9 chr9 115076648 115077021 -2785606 + L2 LINE L2 2581 3033 -280 257 189 38 0 chr9 115077382 115077435 -2785192 + C-rich Low_complexity Low_complexity 1 55 0 559 215 25 8 chr9 115077744 115077865 -2784762 + MIR SINE MIR 62 184 -78 181 304 37 89 chr9 115077913 115078048 -2784579 + L2 LINE L2 2625 2752 -562 287 289 0 13 chr9 115079094 115079170 -2783457 + MIR SINE MIR 107 181 -81 432 0 0 0 chr9 115079379 115079427 -2783200 + (CA)n Simple_repeat Simple_repeat 2 49 0 225 291 13 25 chr9 115080244 115080323 -2782304 - MIR SINE MIR -79 183 106 190 341 149 15 chr9 115080353 115080514 -2782113 - MIR SINE MIR -62 146 16 505 289 86 52 chr9 115081071 115081483 -2781144 + L2 LINE L2 7 3292 -21 400 298 219 0 chr9 115081831 115082059 -2780568 + L3 LINE CR1 1277 1554 -23 203 352 44 0 chr9 115082901 115082992 -2779635 + L2 LINE L2 3174 3268 -4 205 298 20 0 chr9 115082999 115083153 -2779474 + (TGGA)n Simple_repeat Simple_repeat 1 157 0 * 224 299 31 0 chr9 115083095 115083192 -2779435 + (TGGG)n Simple_repeat Simple_repeat 4 103 0 1207 213 40 70 chr9 115083219 115083379 -2779248 + MLT1B LTR MaLR 1 164 -226 2121 99 0 0 chr9 115083379 115083680 -2778947 + AluSx SINE Alu 8 312 0 1207 213 40 70 chr9 115083680 115083918 -2778709 + MLT1B LTR MaLR 164 387 -3 198 0 0 0 chr9 115083941 115083963 -2778664 + (TGGG)n Simple_repeat Simple_repeat 3 24 0 428 170 9 62 chr9 115083986 115084098 -2778529 + MER53 DNA DNA 84 189 0 229 224 0 45 chr9 115084188 115084255 -2778372 + GA-rich Low_complexity Low_complexity 4 67 0 8524 212 55 25 chr9 115084735 115087283 -2775344 + L1MB8 LINE L1 2681 5303 -843 1110 61 0 0 chr9 115087283 115087415 -2775212 + AluSp SINE Alu 1 132 -181 1939 87 3 84 chr9 115087417 115087749 -2774878 + AluSp SINE Alu 1 307 0 3444 197 40 41 chr9 115087750 115088263 -2774364 + L1MB8 LINE L1 5302 5815 -363 2155 118 3 3 chr9 115088263 115088569 -2774058 + AluSx SINE Alu 1 306 -6 3444 197 40 41 chr9 115088569 115088927 -2773700 + L1MB8 LINE L1 5815 6172 -6 300 53 0 0 chr9 115088934 115088972 -2773655 + (CA)n Simple_repeat Simple_repeat 1 38 0 636 251 6 39 chr9 115089344 115089523 -2773104 - MER63A DNA MER1_type -35 175 3 328 194 167 28 chr9 115090063 115090171 -2772456 - MER45A DNA AcHobo 0 178 56 416 194 60 67 chr9 115091655 115091789 -2770838 - MIR SINE MIR -117 145 13 1018 246 116 9 chr9 115093842 115094187 -2768440 + MLT1B LTR MaLR 1 382 -8 2114 229 27 0 chr9 115094194 115094706 -2767921 + L1MB5 LINE L1 5613 6138 -36 282 366 24 8 chr9 115096153 115096276 -2766351 + L2 LINE L2 3183 3307 -6 238 391 31 0 chr9 115097858 115097986 -2764641 - MIR SINE MIR -70 192 61 320 309 93 0 chr9 115098279 115098432 -2764195 - MIR SINE MIR -34 228 55 220 195 0 0 chr9 115099326 115099367 -2763260 - MIR SINE MIR -117 145 105 236 339 146 8 chr9 115099445 115099575 -2763052 + MIR3 SINE MIR 44 191 -17 274 290 164 34 chr9 115101526 115101733 -2760894 + L2 LINE L2 3038 3271 -1 464 248 57 28 chr9 115101834 115101975 -2760652 + MIR SINE MIR 31 175 -87 226 304 87 9 chr9 115101985 115102100 -2760527 - L2 LINE L2 -30 3283 3160 1638 154 14 3 chr9 115102610 115102895 -2759732 + AluJo SINE Alu 1 288 -24 203 152 0 0 chr9 115103433 115103466 -2759161 + GA-rich Low_complexity Low_complexity 2 34 0 660 291 93 45 chr9 115105912 115106179 -2756448 + L2 LINE L2 2874 3127 -186 210 71 0 0 chr9 115106179 115106207 -2756420 + (TTTG)n Simple_repeat Simple_repeat 4 31 0 2130 94 0 0 chr9 115106210 115106485 -2756142 - AluSx SINE Alu -37 275 1 660 291 93 45 chr9 115106485 115106633 -2755994 + L2 LINE L2 3128 3313 0 261 271 0 0 chr9 115107385 115107444 -2755183 + GA-rich Low_complexity Low_complexity 4 62 0 2215 90 3 0 chr9 115107943 115108253 -2754374 + AluY SINE Alu 1 311 0 2165 108 0 3 chr9 115108258 115108554 -2754073 + AluSq SINE Alu 1 295 -18 2513 97 28 17 chr9 115108595 115108955 -2753672 - THE1B LTR MaLR 0 364 1 673 268 48 43 chr9 115108968 115109363 -2753264 + HAL1 LINE L1 1026 1422 -1085 738 270 17 12 chr9 115109389 115109630 -2752997 + HAL1 LINE L1 1511 1752 -755 5731 200 36 49 chr9 115109862 115109947 -2752680 + L1MB8 LINE L1 3713 3798 -2380 1946 132 3 3 chr9 115109947 115110263 -2752364 + AluSx SINE Alu 1 316 0 5731 200 36 49 chr9 115110263 115110781 -2751846 + L1MB8 LINE L1 3798 4321 -1857 1853 156 54 0 chr9 115110781 115111076 -2751551 - AluSx SINE Alu -1 311 1 5731 200 36 49 chr9 115111076 115111599 -2751028 + L1MB8 LINE L1 4321 4849 -1329 2225 98 0 3 chr9 115111599 115111905 -2750722 + AluY SINE Alu 2 306 -5 5731 200 36 49 chr9 115111905 115112783 -2749844 + L1MB8 LINE L1 4849 5678 -500 1340 145 40 9 chr9 115112783 115113011 -2749616 - MER46A DNA MER2_type -1 235 1 5731 200 36 49 chr9 115113011 115113386 -2749241 + L1MB8 LINE L1 5678 6056 -122 409 367 24 12 chr9 115113399 115113508 -2749119 + HAL1 LINE L1 2000 2113 -394 1990 133 6 13 chr9 115113508 115113823 -2748804 + AluSq SINE Alu 1 313 0 409 367 24 12 chr9 115113823 115113882 -2748745 + HAL1 LINE L1 2113 2170 -337 1969 108 22 0 chr9 115114213 115114548 -2748079 + AluJo SINE Alu 1 341 0 299 333 154 10 chr9 115114982 115115177 -2747450 - MIR SINE MIR -4 258 36 190 254 56 0 chr9 115115290 115115361 -2747266 - MIR SINE MIR -89 119 45 234 309 127 8 chr9 115116284 115116410 -2746217 - MIR3 SINE MIR -63 145 5 233 361 88 44 chr9 115116647 115116896 -2745731 + L2 LINE L2 3002 3261 -11 357 281 10 7 chr9 115116917 115117328 -2745299 + (TGGA)n Simple_repeat Simple_repeat 1 412 0 394 280 72 19 chr9 115117704 115117865 -2744762 - MIR SINE MIR -56 152 34 484 311 178 27 chr9 115118619 115118829 -2743798 + L1ME4a LINE L1 5832 6079 -42 2272 87 0 0 chr9 115118829 115119129 -2743498 + AluY SINE Alu 1 300 -11 484 311 178 27 chr9 115119129 115119143 -2743484 + L1ME4a LINE L1 6079 6090 -31 197 187 69 0 chr9 115119272 115119341 -2743286 - MIR SINE MIR -87 121 73 238 200 319 92 chr9 115119777 115119962 -2742665 + MIR SINE MIR 8 234 -28 247 288 0 0 chr9 115120196 115120262 -2742365 - MIR SINE MIR -98 110 45 248 296 92 0 chr9 115120973 115121071 -2741556 + MIR SINE MIR 49 155 -107 413 290 37 23 chr9 115121606 115121820 -2740807 - MLT1C LTR MaLR -12 455 239 796 206 80 46 chr9 115121903 115122165 -2740462 - L1MB3 LINE L1 -1 6182 5912 2380 58 0 3 chr9 115122166 115122458 -2740169 + AluSx SINE Alu 1 291 -21 2171 90 14 3 chr9 115123380 115123668 -2738959 - AluSx SINE Alu -21 291 1 346 109 98 0 chr9 115123669 115123761 -2738866 + CT-rich Low_complexity Low_complexity 4 104 0 1706 201 0 10 chr9 115123777 115124091 -2738536 - AluJo SINE Alu -1 311 1 412 301 15 58 chr9 115124270 115124529 -2738098 - L2 LINE L2 -213 3059 2812 326 300 106 0 chr9 115124578 115124708 -2737919 + MIR3 SINE MIR 13 154 -54 320 264 43 36 chr9 115124730 115124870 -2737757 + MER5A DNA MER1_type 13 153 -36 307 288 59 46 chr9 115124746 115124899 -2737728 - MER5B DNA MER1_type -16 162 8 * 946 296 104 13 chr9 115124930 115125305 -2737322 + L2 LINE L2 2899 3307 -6 186 43 0 0 chr9 115125338 115125361 -2737266 + (T)n Simple_repeat Simple_repeat 1 23 0 1024 194 0 39 chr9 115125374 115125580 -2737047 + AluJo SINE Alu 23 220 -92 514 161 58 0 chr9 115125598 115125685 -2736942 + AluSg/x SINE Alu 159 250 -62 1196 163 39 0 chr9 115125685 115125888 -2736739 + AluJo SINE Alu 85 295 -17 1075 71 5 33 chr9 115125892 115126076 -2736551 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 792 200 26 1 chr9 115326085 115326286 -2536341 - MER33 DNA MER1_type -250 74 1 188 364 61 8 chr9 115326342 115326474 -2536153 - L2 LINE L2 -167 3105 2967 202 306 54 34 chr9 115327448 115327595 -2535032 + MIR3 SINE MIR 10 159 -49 245 248 34 86 chr9 115327996 115328113 -2534514 + MIR SINE MIR 35 145 -117 1835 247 67 19 chr9 115328247 115328817 -2533810 + MER77 LTR ERV1 1 597 -8 192 330 76 8 chr9 115329525 115329643 -2532984 - MIR SINE MIR -134 128 3 348 317 25 0 chr9 115333678 115333798 -2528829 - MIR3 SINE MIR -71 137 15 325 307 107 14 chr9 115334081 115334221 -2528406 - L1ME LINE L1 -409 5761 5609 1385 217 117 20 chr9 115335036 115335437 -2527190 - MLT1F LTR MaLR -4 538 99 189 343 100 0 chr9 115340769 115340839 -2521788 + MIR SINE MIR 87 163 -99 220 321 9 28 chr9 115341657 115341763 -2520864 - MIR SINE MIR -61 147 44 309 353 50 0 chr9 115341879 115341998 -2520629 + MIR SINE MIR 56 180 -82 220 296 51 10 chr9 115342149 115342247 -2520380 + MIR3 SINE MIR 77 178 -30 423 254 15 37 chr9 115342785 115342919 -2519708 - MER45A DNA AcHobo -2 176 46 450 188 34 34 chr9 115349786 115349903 -2512724 + MSTD LTR MaLR 280 396 0 249 258 39 77 chr9 115350244 115350399 -2512228 - MIR3 SINE MIR -53 155 7 3166 68 0 11 chr9 115351074 115351541 -2511086 - L1P LINE L1 -2157 3989 3528 1535 286 52 74 chr9 115351550 115352758 -2509869 - L1ME LINE L1 -1304 4842 3661 1617 172 0 10 chr9 115352800 115353096 -2509531 - AluSg SINE Alu -16 294 2 485 259 18 0 chr9 115353377 115353489 -2509138 - MER81 DNA DNA 0 114 1 1390 107 0 5 chr9 115355985 115356182 -2506445 - AluSg/x SINE Alu -13 299 104 1871 98 39 53 chr9 115356182 115356324 -2506303 - Tigger2a DNA MER2_type -2355 353 211 2233 98 0 9 chr9 115356324 115356639 -2505988 + AluSp SINE Alu 2 313 0 1871 98 39 53 chr9 115356639 115356854 -2505773 - Tigger2a DNA MER2_type -2497 211 1 2194 93 3 0 chr9 115356885 115357176 -2505451 + AluSq SINE Alu 1 292 -21 2393 53 0 10 chr9 115357183 115357483 -2505144 + AluY SINE Alu 1 297 -14 189 0 0 0 chr9 115357484 115357505 -2505122 + (CATA)n Simple_repeat Simple_repeat 4 24 0 226 284 21 42 chr9 115357766 115357861 -2504766 + MER114 LTR ERV 41 133 -515 902 249 179 3 chr9 115357906 115358252 -2504375 + MER114 LTR ERV 135 541 -107 640 80 23 0 chr9 115358369 115358457 -2504170 - AluSx SINE Alu -3 306 217 889 160 0 26 chr9 115358457 115358613 -2504014 - AluSx SINE Alu -160 152 1 457 293 17 0 chr9 115359822 115360003 -2502624 + HERVL LTR ERVL 3761 3944 -1710 1178 239 121 17 chr9 115360630 115361045 -2501582 + L1MB5 LINE L1 5717 6174 0 2107 118 13 0 chr9 115361053 115361359 -2501268 + AluSx SINE Alu 1 310 -2 21 0 0 0 chr9 115361403 115361424 -2501203 + AT_rich Low_complexity Low_complexity 1 21 0 205 104 52 52 chr9 115362339 115362473 -2500154 + (CCA)n Simple_repeat Simple_repeat 2 135 0 437 293 0 0 chr9 115362491 115362766 -2499861 + (CCCCAA)n Simple_repeat Simple_repeat 1 275 0 493 309 50 80 chr9 115363759 115364196 -2498431 + L2 LINE L2 2848 3271 -1 2191 109 7 0 chr9 115365627 115365931 -2496696 - AluSx SINE Alu -6 306 1 241 269 206 51 chr9 115365946 115366121 -2496506 - MIR SINE MIR -15 247 46 196 283 19 0 chr9 115366631 115366684 -2495943 - MIR SINE MIR -189 73 20 272 266 104 71 chr9 115366965 115367033 -2495594 + MER117 DNA MER1_type 2 66 -131 2549 209 40 24 chr9 115367033 115367582 -2495045 + MER89 LTR ERV1 1 558 -1 272 266 104 71 chr9 115367582 115367667 -2494960 + MER117 DNA MER1_type 66 160 -37 1982 148 7 0 chr9 115368507 115368804 -2493823 + AluSx SINE Alu 14 312 0 421 36 18 0 chr9 115368804 115368860 -2493767 + (GGAA)n Simple_repeat Simple_repeat 4 60 0 289 351 30 8 chr9 115370676 115370810 -2491817 + MIR3 SINE MIR 15 151 -57 569 264 190 4 chr9 115370916 115371158 -2491469 + LTR16C LTR ERVL 205 491 0 233 232 171 0 chr9 115371280 115371362 -2491265 - MER58 DNA MER1_type -119 96 1 987 167 0 0 chr9 115371406 115371556 -2491071 + AluJb SINE Alu 1 150 -162 253 306 151 40 chr9 115371665 115372151 -2490476 - L1MEc LINE L1 -2789 3426 2995 2458 60 0 7 chr9 115372151 115372453 -2490174 + AluY SINE Alu 1 300 -11 253 306 151 40 chr9 115372453 115373249 -2489378 - L1MEc LINE L1 -3220 2995 2034 1135 248 90 23 chr9 115373250 115373637 -2488990 - MLT1C LTR MaLR -2 465 53 376 269 173 29 chr9 115373894 115374236 -2488391 - L1MEc LINE L1 -4641 1755 1365 2328 75 0 0 chr9 115374936 115375228 -2487399 + AluY SINE Alu 20 311 0 522 226 8 0 chr9 115375438 115375562 -2487065 - L1MB7 LINE L1 -305 5879 5755 232 253 193 24 chr9 115375579 115375662 -2486965 - MIR SINE MIR -116 146 50 362 319 68 25 chr9 115375718 115375881 -2486746 + L1MEd LINE L1 59 228 -5891 3650 213 48 7 chr9 115376016 115377013 -2485614 - L1MB7 LINE L1 -11 6173 5135 627 258 0 0 chr9 115377046 115377170 -2485457 - FLAM_C SINE Alu -8 125 2 803 329 76 5 chr9 115377212 115377801 -2484826 + L1MEd LINE L1 461 1091 -5028 1193 247 66 60 chr9 115377810 115378280 -2484347 - MLT1F LTR MaLR 0 542 70 426 286 82 55 chr9 115378286 115378802 -2483825 + L1M3d LINE L1 1255 1763 -4517 28 0 0 0 chr9 115379120 115379148 -2483479 + AT_rich Low_complexity Low_complexity 1 28 0 298 316 15 15 chr9 115380805 115380938 -2481689 - MIR3 SINE MIR -65 143 11 254 367 152 5 chr9 115381330 115381540 -2481087 + MIR SINE MIR 2 242 -20 213 208 0 0 chr9 115382247 115382295 -2480332 + (CTGGGG)n Simple_repeat Simple_repeat 5 52 0 188 356 23 15 chr9 115386209 115386341 -2476286 + L2 LINE L2 2866 2998 -274 444 305 25 54 chr9 115386401 115386468 -2476159 - MIR SINE MIR -37 225 158 1900 146 13 7 chr9 115386468 115386777 -2475850 + AluJo SINE Alu 1 311 -1 444 305 25 54 chr9 115386777 115386912 -2475715 - MIR SINE MIR -104 158 29 197 231 39 0 chr9 115387089 115387141 -2475486 + MIR SINE MIR 83 136 -72 182 217 163 22 chr9 115389984 115390076 -2472551 + MIR SINE MIR 37 141 -121 251 243 78 10 chr9 115393416 115393519 -2469108 + MIR SINE MIR 35 144 -118 381 149 54 7 chr9 115393607 115393755 -2468872 + (TG)n Simple_repeat Simple_repeat 1 155 0 191 246 123 0 chr9 115393830 115393895 -2468732 + MIR SINE MIR 74 146 -62 363 232 19 35 chr9 115394800 115394915 -2467712 - MIR SINE MIR -64 144 62 1542 243 51 64 chr9 115396144 115396687 -2465940 - MLT1G LTR MaLR -59 531 2 247 145 53 46 chr9 115396750 115396902 -2465725 + (TCTA)n Simple_repeat Simple_repeat 3 155 0 279 0 0 0 chr9 115398127 115398158 -2464469 + (TG)n Simple_repeat Simple_repeat 2 32 0 1493 240 50 30 chr9 115400745 115401204 -2461423 - MLT1D LTR MaLR -7 498 31 193 333 27 0 chr9 115404471 115404546 -2458081 + MIR SINE MIR 74 150 -112 862 277 38 3 chr9 115405046 115405335 -2457292 - L1MB4 LINE L1 -317 5863 5565 344 305 28 7 chr9 115405357 115405498 -2457129 + LTR33 LTR ERVL 15 158 -363 353 281 56 64 chr9 115406463 115406712 -2455915 + L1ME3A LINE L1 5692 5938 -232 1266 199 218 22 chr9 115406719 115407132 -2455495 - MLT1D LTR MaLR -11 494 1 639 245 11 0 chr9 115407487 115407662 -2454965 - L1MB5 LINE L1 -20 6154 5960 1003 275 63 11 chr9 115407776 115408143 -2454484 - L1MB5 LINE L1 -163 6011 5626 670 249 111 5 chr9 115408312 115408501 -2454126 - MER3 DNA MER1_type 0 209 1 2190 121 0 3 chr9 115411384 115411697 -2450930 + AluSx SINE Alu 1 312 0 480 141 54 0 chr9 115412123 115412215 -2450412 + AluS SINE Alu 1 97 -216 189 0 0 0 chr9 115412344 115412365 -2450262 + (A)n Simple_repeat Simple_repeat 1 21 0 23 33 0 0 chr9 115412477 115412507 -2450120 + AT_rich Low_complexity Low_complexity 1 30 0 333 346 94 54 chr9 115412593 115413073 -2449554 + L1 LINE L1 4799 5297 -849 2150 132 82 12 chr9 115413244 115413584 -2449043 + THE1B LTR MaLR 1 364 0 577 234 44 0 chr9 115413905 115414042 -2448585 - MIR SINE MIR -40 222 80 417 342 16 47 chr9 115416305 115416495 -2446132 + MIR SINE MIR 77 260 -2 209 256 0 0 chr9 115418030 115418073 -2444554 + L2 LINE L2 3266 3308 -5 224 343 62 20 chr9 115420608 115420754 -2441873 - MIR3 SINE MIR -24 184 33 231 166 10 126 chr9 115421236 115421501 -2441126 + C-rich Low_complexity Low_complexity 1 234 0 450 309 91 6 chr9 115422111 115422286 -2440341 + MIR SINE MIR 14 203 -59 183 184 0 0 chr9 115422293 115422331 -2440296 + (CA)n Simple_repeat Simple_repeat 1 38 0 302 213 79 110 chr9 115422371 115422535 -2440092 + MER63 DNA MER1_type 1 785 -277 1171 201 10 119 chr9 115422676 115423079 -2439548 + MLT1A1 LTR MaLR 1 359 -6 258 385 37 0 chr9 115423158 115423402 -2439225 + ERVL LTR ERVL 4770 5022 -742 656 309 28 17 chr9 115423956 115424272 -2438355 + LTR16A LTR ERVL 129 457 0 401 214 11 0 chr9 115425818 115425907 -2436720 - MLT1D LTR MaLR -315 190 101 343 280 50 0 chr9 115426778 115426878 -2435749 + MIR SINE MIR 32 136 -126 957 194 5 11 chr9 115430267 115430458 -2432169 + AluJb SINE Alu 122 311 -1 304 319 141 0 chr9 115430482 115430617 -2432010 + HAL1 LINE L1 1048 1201 -1306 508 292 43 38 chr9 115430632 115430841 -2431786 - MLT1J1 LTR MaLR -71 375 166 2107 97 0 52 chr9 115430998 115431307 -2431320 - AluSx SINE Alu -19 293 1 298 326 133 0 chr9 115432555 115432690 -2429937 + MIR3 SINE MIR 38 190 -18 556 256 6 36 chr9 115433193 115433361 -2429266 - LTR33 LTR ERVL -347 174 12 1840 268 58 26 chr9 115433392 115433963 -2428664 + MLT1E LTR MaLR 3 591 -2 520 255 50 6 chr9 115433968 115434129 -2428498 + MLT1E-int LTR MaLR 4 171 -1200 1445 118 24 0 chr9 115434135 115434346 -2428281 + AluSp SINE Alu 1 216 -97 688 201 17 115 chr9 115434346 115434580 -2428047 + AluJb SINE Alu 3 213 -99 1136 219 12 83 chr9 115434582 115434906 -2427721 + AluSx SINE Alu 2 302 0 826 298 9 41 chr9 115434913 115435252 -2427375 + MLT1E-int LTR MaLR 279 606 -765 1132 251 57 9 chr9 115435946 115436280 -2426347 + MLT1E LTR MaLR 288 584 -9 907 193 23 6 chr9 115437215 115437391 -2425236 - AluJo SINE Alu -16 296 118 291 253 0 27 chr9 115437783 115437858 -2424769 + CT-rich Low_complexity Low_complexity 1 73 0 302 368 0 18 chr9 115437858 115437972 -2424655 - L1MC4 LINE L1 -141 7901 7790 249 109 0 0 chr9 115437993 115438039 -2424588 + (CATCC)n Simple_repeat Simple_repeat 1 46 0 220 216 0 52 chr9 115438283 115438380 -2424247 + (CATCC)n Simple_repeat Simple_repeat 5 96 0 206 227 0 52 chr9 115439153 115439250 -2423377 + (CATCC)n Simple_repeat Simple_repeat 5 96 0 206 314 183 11 chr9 115440995 115441170 -2421457 + L2 LINE L2 2855 3059 -213 211 307 119 0 chr9 115442869 115442970 -2419657 - MIR SINE MIR -39 223 111 291 216 144 32 chr9 115444037 115444162 -2418465 + MIR3 SINE MIR 11 149 -59 320 357 63 0 chr9 115444809 115444952 -2417675 + MIR SINE MIR 100 251 -11 252 290 43 0 chr9 115445886 115445979 -2416648 + MER103 DNA DNA 9 105 -61 2469 38 0 3 chr9 115446940 115447233 -2415394 - AluY SINE Alu -19 292 1 234 200 0 0 chr9 115447638 115447683 -2414944 + MER103 DNA DNA 57 101 -65 208 148 33 66 chr9 115449494 115449555 -2413072 + (CTGGGG)n Simple_repeat Simple_repeat 2 60 0 2139 95 3 3 chr9 115451872 115452167 -2410460 - AluSq SINE Alu -18 295 1 368 309 63 0 chr9 115452169 115452295 -2410332 - MIR SINE MIR -64 198 65 372 299 134 0 chr9 115452465 115452592 -2410035 + L1MB8 LINE L1 4711 4854 -1292 2903 270 99 54 chr9 115452593 115453531 -2409096 - L1MC2 LINE L1 -3 7763 6641 2134 108 7 0 chr9 115453531 115453818 -2408809 - AluSx SINE Alu -23 289 1 2903 270 99 54 chr9 115453818 115454334 -2408293 - L1MC2 LINE L1 -1125 6641 6149 220 355 47 12 chr9 115455066 115455235 -2407392 + MIR SINE MIR 8 182 -80 2068 123 0 0 chr9 115455237 115455529 -2407098 - AluSx SINE Alu -20 292 1 272 225 16 85 chr9 115456380 115456509 -2406118 + L1MB8 LINE L1 5643 5762 -359 206 250 0 0 chr9 115457529 115457569 -2405058 + MIR SINE MIR 158 197 -65 1911 119 128 15 chr9 115457864 115458201 -2404426 - THE1C LTR MaLR 0 375 1 265 353 49 8 chr9 115458862 115458984 -2403643 + L2 LINE L2 3137 3263 -9 1024 255 65 28 chr9 115459477 115459799 -2402828 + L1MB8 LINE L1 5845 6178 0 317 323 58 90 chr9 115460024 115460213 -2402414 - MIR SINE MIR -11 251 69 978 273 71 18 chr9 115460303 115460698 -2401929 - LTR37B LTR ERV1 0 468 53 2071 140 0 9 chr9 115460716 115461031 -2401596 - AluSx SINE Alu 0 312 1 413 331 152 8 chr9 115461349 115461929 -2400698 - L2 LINE L2 -189 3124 2466 364 339 58 55 chr9 115462467 115462879 -2399748 + L1MEd LINE L1 596 1005 -5114 2126 135 3 0 chr9 115462879 115463191 -2399436 + AluSq SINE Alu 1 313 0 364 339 58 55 chr9 115463191 115463413 -2399214 + L1MEd LINE L1 1005 1235 -4884 2021 73 0 4 chr9 115463413 115463672 -2398955 + AluY SINE Alu 45 302 -9 364 339 58 55 chr9 115463672 115463696 -2398931 + L1MEd LINE L1 1235 1257 -4862 319 262 41 11 chr9 115463813 115463933 -2398694 - MIR SINE MIR -81 127 2 188 302 0 0 chr9 115464539 115464582 -2398045 + L2 LINE L2 3268 3310 -3 1516 142 94 22 chr9 115465869 115466144 -2396483 - AluJo SINE Alu -17 295 1 475 325 0 0 chr9 115467634 115467794 -2394833 + (CA)n Simple_repeat Simple_repeat 1 160 0 254 222 67 89 chr9 115469940 115470030 -2392597 + MIR SINE MIR 93 180 -82 563 159 30 32 chr9 115470440 115470722 -2391905 + CT-rich Low_complexity Low_complexity 1 281 0 1005 151 0 0 chr9 115470722 115470910 -2391717 + AluSg/x SINE Alu 145 312 0 1714 125 201 6 chr9 115470943 115471296 -2391331 + MSTA LTR MaLR 7 428 0 598 142 28 0 chr9 115471298 115471404 -2391223 + L1MC3 LINE L1 7423 7531 -254 619 216 36 18 chr9 115471414 115471581 -2391046 + L1MC3 LINE L1 7615 7784 -1 1568 139 7 78 chr9 115471623 115471917 -2390710 + AluJb SINE Alu 22 294 -18 2016 128 0 26 chr9 115472120 115472424 -2390203 - AluSx SINE Alu -16 296 1 210 293 0 0 chr9 115474126 115474184 -2388443 + MIR SINE MIR 117 174 -88 253 288 12 0 chr9 115474793 115474873 -2387754 + MER117 DNA MER1_type 26 106 -91 1272 218 71 7 chr9 115476571 115476879 -2385748 - MLT1A1 LTR MaLR -37 328 1 315 338 15 0 chr9 115476897 115477033 -2385594 - L2 LINE L2 -299 2973 2836 215 100 0 25 chr9 115477194 115477234 -2385393 + (TCCC)n Simple_repeat Simple_repeat 3 41 0 362 178 35 6 chr9 115677611 115677785 -2184842 + (TG)n Simple_repeat Simple_repeat 2 180 0 205 174 29 0 chr9 115677820 115677889 -2184738 + (TG)n Simple_repeat Simple_repeat 2 72 0 212 296 93 64 chr9 115678478 115678650 -2183977 + MIR3 SINE MIR 13 189 -19 2123 97 40 0 chr9 115682164 115682464 -2180163 - AluSq SINE Alu -1 312 1 319 241 0 46 chr9 115682705 115682792 -2179835 - L1ME4a LINE L1 -1 6120 6038 212 318 118 0 chr9 115682954 115683064 -2179563 + MIR SINE MIR 19 141 -67 249 174 43 0 chr9 115684443 115684512 -2178115 + (CTCA)n Simple_repeat Simple_repeat 1 72 0 405 187 198 0 chr9 115687385 115687476 -2175151 + MER81 DNA DNA 5 113 -1 192 179 0 0 chr9 115687787 115687826 -2174801 + (TG)n Simple_repeat Simple_repeat 1 39 0 218 193 53 18 chr9 115689205 115689262 -2173365 + GA-rich Low_complexity Low_complexity 1 59 0 928 242 41 58 chr9 115689435 115689480 -2173147 - L1MB7 LINE L1 -5 6175 6131 212 0 36 0 chr9 115689480 115689508 -2173119 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1879 139 0 0 chr9 115689512 115689792 -2172835 - AluSx SINE Alu -31 281 2 928 242 41 58 chr9 115689792 115690094 -2172533 - L1MB7 LINE L1 -52 6128 5817 643 239 136 0 chr9 115690274 115690487 -2172140 - L1MB7 LINE L1 -392 5782 5541 216 0 0 0 chr9 115691268 115691292 -2171335 + (TG)n Simple_repeat Simple_repeat 1 24 0 301 382 64 26 chr9 115691766 115691999 -2170628 + L1M4 LINE L1 4653 4894 -1252 1385 186 52 0 chr9 115692187 115692439 -2170188 - AluJo SINE Alu -21 291 27 233 139 0 0 chr9 115692581 115692617 -2170010 - Alu SINE Alu -134 169 134 2498 48 0 7 chr9 115692926 115693236 -2169391 + AluY SINE Alu 1 308 -3 208 289 0 0 chr9 115693696 115693748 -2168879 + GA-rich Low_complexity Low_complexity 2 53 0 521 216 0 0 chr9 115694455 115694557 -2168070 + MER110A LTR ERV1 73 174 -294 1995 170 37 26 chr9 115694557 115695099 -2167528 - MLT2A2 LTR ERVL 0 554 1 7476 88 3 35 chr9 115695099 115695532 -2167095 - HERVL-A2 LTR ERVL 0 5654 5209 2057 127 7 3 chr9 115695532 115695840 -2166787 - AluSp SINE Alu -4 309 1 7476 88 3 35 chr9 115695840 115696502 -2166125 - HERVL-A2 LTR ERVL -445 5209 4594 1025 170 0 0 chr9 115696503 115696674 -2165953 - AluSp SINE Alu -3 310 140 1993 130 3 7 chr9 115697291 115697590 -2165037 + AluSx SINE Alu 1 298 -14 36 23 0 0 chr9 115697606 115697649 -2164978 + AT_rich Low_complexity Low_complexity 1 43 0 1274 324 52 57 chr9 115697910 115698860 -2163767 - L1ME3A LINE L1 0 6170 5223 1425 241 51 72 chr9 115698860 115699370 -2163257 + MLT1D LTR MaLR 3 501 -4 1274 324 52 57 chr9 115699370 115699632 -2162995 - L1ME3A LINE L1 -947 5223 4961 208 337 0 35 chr9 115699891 115699977 -2162650 + MIR SINE MIR 65 147 -115 191 219 24 0 chr9 115700993 115701034 -2161593 + MIR SINE MIR 106 147 -61 2088 97 7 29 chr9 115701846 115702155 -2160472 - AluSq SINE Alu -11 302 1 240 158 0 0 chr9 115705129 115705186 -2157441 + (TCTCTG)n Simple_repeat Simple_repeat 2 58 0 284 229 25 76 chr9 115706156 115706274 -2156353 - L3 LINE CR1 -75 1502 1391 229 300 56 0 chr9 115706401 115706491 -2156136 + MIR SINE MIR 42 136 -72 364 305 109 24 chr9 115707097 115707307 -2155320 + MIR SINE MIR 21 248 -14 206 262 26 17 chr9 115707842 115707921 -2154706 + MER5A DNA MER1_type 80 162 -16 1023 281 112 11 chr9 115710455 115711027 -2151600 + L1ME2 LINE L1 4028 4657 -1489 2089 125 0 0 chr9 115711028 115711316 -2151311 + AluSx SINE Alu 1 288 -24 1060 122 0 0 chr9 115711332 115711479 -2151148 + AluSg/x SINE Alu 134 280 -32 303 28 0 0 chr9 115711479 115711515 -2151112 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 743 308 116 31 chr9 115711515 115712693 -2149934 + L1ME2 LINE L1 4647 5951 -211 2090 122 0 3 chr9 115713630 115713934 -2148693 - AluSx SINE Alu -7 305 3 561 270 108 43 chr9 115714238 115714516 -2148111 - MER110A LTR ERV1 -1 467 172 17351 81 10 0 chr9 115714527 115716817 -2145810 + HERVL LTR ERVL 2291 4602 -1052 1451 100 0 0 chr9 115716817 115717007 -2145620 + AluSx SINE Alu 1 190 -122 1236 183 91 17 chr9 115718227 115718771 -2143856 + MER21A LTR ERV1 1 723 -208 387 113 38 62 chr9 115718781 115718861 -2143766 + MER21A LTR ERV1 848 925 -6 2006 191 96 7 chr9 115719473 115719912 -2142715 - MER66B LTR ERV1 0 486 9 509 212 68 30 chr9 115721073 115721205 -2141422 + L1ME2 LINE L1 6018 6154 -10 4589 201 36 33 chr9 115721419 115722335 -2140292 - L1MB8 LINE L1 -2 6176 5264 1972 111 0 31 chr9 115722335 115722670 -2139957 - AluSc SINE Alu 0 326 1 4589 201 36 33 chr9 115722670 115722955 -2139672 - L1MB8 LINE L1 -914 5264 4981 2181 128 0 0 chr9 115722955 115723267 -2139360 - AluSx SINE Alu 0 312 1 4589 201 36 33 chr9 115723267 115724204 -2138423 - L1MB8 LINE L1 -1197 4981 4018 353 206 159 0 chr9 115724731 115724838 -2137789 - L2 LINE L2 -2 3311 3188 323 261 6 0 chr9 115726062 115726223 -2136404 + (TG)n Simple_repeat Simple_repeat 2 163 0 453 231 0 0 chr9 115726260 115726433 -2136194 + (TG)n Simple_repeat Simple_repeat 2 174 0 255 227 0 0 chr9 115726545 115726642 -2135985 + (TG)n Simple_repeat Simple_repeat 2 98 0 548 194 0 6 chr9 115726686 115726861 -2135766 + (TG)n Simple_repeat Simple_repeat 1 174 0 370 200 0 14 chr9 115726883 115727023 -2135604 + (TG)n Simple_repeat Simple_repeat 1 138 0 1181 296 138 14 chr9 115727288 115727870 -2134757 - MLT2F LTR ERVL -8 655 2 455 272 57 13 chr9 115727871 115728029 -2134598 - ERVL-F LTR ERVL -8 5756 5592 1151 257 70 71 chr9 115728110 115728648 -2133979 - MLT1F1 LTR MaLR 0 567 8 735 301 102 0 chr9 115728677 115728943 -2133684 - ERVL-F LTR ERVL -257 5507 5215 234 313 100 20 chr9 115730920 115731070 -2131557 - MIR3 SINE MIR -2 206 45 1609 112 17 147 chr9 115732278 115732626 -2130001 - AluSx SINE Alu -9 303 1 403 250 40 0 chr9 115732818 115732918 -2129709 - MIR SINE MIR -126 136 33 1591 175 77 25 chr9 115733599 115733925 -2128702 - MLT1B LTR MaLR -47 343 1 347 229 57 41 chr9 115734628 115734750 -2127877 - MLT1J2 LTR MaLR -229 221 98 26 0 0 0 chr9 115735081 115735107 -2127520 + AT_rich Low_complexity Low_complexity 1 26 0 1636 245 172 0 chr9 115735156 115735633 -2126994 + MLT1F1 LTR MaLR 9 567 0 195 129 0 0 chr9 115737709 115737740 -2124887 + (GAA)n Simple_repeat Simple_repeat 2 32 0 219 220 34 0 chr9 115738384 115738443 -2124184 - MIR SINE MIR -88 120 60 231 300 39 39 chr9 115739854 115739984 -2122643 + L2 LINE L2 3143 3272 0 881 151 3 3 chr9 115739988 115740331 -2122296 + (TGAA)n Simple_repeat Simple_repeat 1 343 0 346 326 11 39 chr9 115741104 115741282 -2121345 + MIR3 SINE MIR 21 193 -15 206 250 159 11 chr9 115742293 115742381 -2120246 + L2 LINE L2 3210 3310 -3 220 115 0 58 chr9 115742486 115742538 -2120089 + (GGAA)n Simple_repeat Simple_repeat 2 50 0 3170 271 80 39 chr9 115742541 115744022 -2118605 + L1MC4 LINE L1 100 1641 -4755 2486 265 35 63 chr9 115744009 115745562 -2117065 + L1ME1 LINE L1 2763 4442 -1773 * 1709 129 4 0 chr9 115745562 115745817 -2116810 + AluSx SINE Alu 35 290 -22 2486 265 35 63 chr9 115745817 115745982 -2116645 + L1ME1 LINE L1 4442 4610 -1605 316 85 0 34 chr9 115746082 115746141 -2116486 + (CCCCCT)n Simple_repeat Simple_repeat 2 58 0 1260 210 108 47 chr9 115746142 115746585 -2116042 + L1ME1 LINE L1 4970 5439 -776 374 289 9 0 chr9 115746600 115746707 -2115920 + L1MC4 LINE L1 1784 6772 -1339 1068 141 0 0 chr9 115746711 115746888 -2115739 + (TA)n Simple_repeat Simple_repeat 1 177 0 1303 124 0 0 chr9 115746938 115747124 -2115503 + AluJb SINE Alu 3 188 -124 367 103 8 24 chr9 115747145 115747170 -2115457 + L1MC/D LINE L1 5370 5394 -761 777 176 78 0 chr9 115747170 115747312 -2115315 + FRAM SINE Alu 5 157 -9 367 103 8 24 chr9 115747312 115747366 -2115261 + L1MC/D LINE L1 5394 5445 -710 616 281 12 0 chr9 115747385 115747545 -2115082 + L1MA10 LINE L1 6171 6332 -2 814 303 124 6 chr9 115747570 115747917 -2114710 + L1ME1 LINE L1 5513 5900 -335 855 126 0 0 chr9 115747996 115748115 -2114512 + FRAM SINE Alu 18 136 -40 239 172 0 17 chr9 115748115 115748173 -2114454 + GA-rich Low_complexity Low_complexity 1 57 0 852 178 9 15 chr9 115748185 115748517 -2114110 + GA-rich Low_complexity Low_complexity 1 330 0 355 350 158 22 chr9 115748564 115748924 -2113703 - HAL1 LINE L1 -1204 1303 895 267 309 30 18 chr9 115748925 115749093 -2113534 + CT-rich Low_complexity Low_complexity 2 171 0 259 178 14 14 chr9 115749200 115749273 -2113354 + GA-rich Low_complexity Low_complexity 2 74 0 1034 98 0 6 chr9 115749278 115749441 -2113186 + (GGAA)n Simple_repeat Simple_repeat 4 165 0 610 299 4 13 chr9 115749444 115749688 -2112939 + L1MA10 LINE L1 5938 6334 0 508 290 69 92 chr9 115749919 115750399 -2112228 - Charlie4a DNA MER1_type 0 508 40 512 271 210 34 chr9 115751039 115751367 -2111260 - MER31B LTR ERV1 -80 386 1 27 81 0 0 chr9 115752377 115752439 -2110188 + AT_rich Low_complexity Low_complexity 1 62 0 534 229 23 8 chr9 115752829 115752960 -2109667 - MLT1C LTR MaLR -328 139 7 229 331 33 33 chr9 115752965 115753086 -2109541 - L2 LINE L2 -29 3284 3164 1162 180 39 0 chr9 115753453 115753686 -2108941 + MLT1D LTR MaLR 4 245 -260 283 337 57 57 chr9 115753806 115754070 -2108557 - MER65A LTR ERV1 -102 343 80 379 192 64 72 chr9 115754078 115754203 -2108424 - MER65A LTR ERV1 -320 125 2 1091 188 107 0 chr9 115754205 115754439 -2108188 + MLT1D LTR MaLR 247 505 0 270 309 80 6 chr9 115754935 115755097 -2107530 - LTR16A LTR ERVL -276 174 1 330 305 128 12 chr9 115755753 115755917 -2106710 + MIR3 SINE MIR 23 205 -3 576 282 130 48 chr9 115756099 115756335 -2106292 + MLT1H LTR MaLR 1 216 -333 6184 53 0 7 chr9 115756335 115757089 -2105538 + L1PA5 LINE L1 5406 6154 0 576 282 130 48 chr9 115757089 115757313 -2105314 + MLT1H LTR MaLR 216 499 -50 1706 199 62 21 chr9 115758728 115759114 -2103513 - MSTA LTR MaLR -4 424 23 2220 104 3 0 chr9 115760257 115760574 -2102053 - pTR5 LTR ERV1 -2046 392 75 335 249 10 12 chr9 115760574 115760681 -2101946 - LTR30 LTR ERV1 -94 624 375 4506 128 84 75 chr9 115760681 115761660 -2100967 - pTR5 LTR ERV1 -413 2025 742 24 0 0 0 chr9 115762589 115762613 -2100014 + GC_rich Low_complexity Low_complexity 1 24 0 310 369 108 0 chr9 115762744 115762920 -2099707 - MIR SINE MIR -5 257 63 234 264 114 19 chr9 115763650 115763764 -2098863 + MIR SINE MIR 34 156 -66 210 190 17 35 chr9 115764907 115764965 -2097662 + CT-rich Low_complexity Low_complexity 3 59 0 223 274 126 42 chr9 115764965 115765060 -2097567 - L2 LINE L2 -11 3261 3159 1064 256 101 39 chr9 115767831 115768265 -2094362 + MLT1D LTR MaLR 3 463 -42 1625 190 127 0 chr9 115768450 115768781 -2093846 + MER83C LTR ERV1 1 373 0 6633 169 38 31 chr9 115768834 115771286 -2091341 + MER83C-int LTR ERV1 57 4650 -230 629 234 116 70 chr9 115771330 115771702 -2090925 + MLT1D LTR MaLR 1 389 -116 318 255 43 11 chr9 115771928 115772022 -2090605 + MLT1D LTR MaLR 368 464 -3 2605 110 50 0 chr9 115772075 115772475 -2090152 - MSTA LTR MaLR 0 428 9 1785 206 40 0 chr9 115773325 115773651 -2088976 + MER44D DNA MER2_type 1 609 0 2228 92 0 25 chr9 115773736 115774052 -2088575 - AluSq SINE Alu -5 308 1 695 171 256 28 chr9 115774180 115774356 -2088271 + MER20 DNA MER1_type 1 216 -3 301 278 51 125 chr9 115774433 115774786 -2087841 + L2 LINE L2 2934 3260 -12 935 156 6 0 chr9 115774819 115774998 -2087629 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 614 208 7 0 chr9 115775024 115775173 -2087454 + (TGGA)n Simple_repeat Simple_repeat 4 153 0 2139 129 3 0 chr9 115775468 115775779 -2086848 + AluSx SINE Alu 1 312 0 735 146 82 18 chr9 115775974 115776145 -2086482 - MER53 DNA DNA -1 188 7 1900 199 18 3 chr9 115776210 115776547 -2086080 - MER2 DNA MER2_type -1 343 2 231 337 53 21 chr9 115777446 115777541 -2085086 - L2 LINE L2 -204 3068 2971 311 229 164 25 chr9 115777850 115777972 -2084655 + MER5B DNA MER1_type 28 166 -12 777 214 43 67 chr9 115778948 115779323 -2083304 + MLT1C LTR MaLR 43 390 0 1433 133 18 9 chr9 115779642 115779868 -2082759 - MER30 DNA MER1_type 0 230 3 2164 185 48 39 chr9 115780208 115780690 -2081937 - MER66B LTR ERV1 0 486 1 268 273 182 0 chr9 115781160 115781303 -2081324 + MER5A DNA MER1_type 3 171 -18 333 246 131 16 chr9 115781810 115781932 -2080695 + MIR SINE MIR 12 147 -115 1335 275 92 18 chr9 115782536 115782814 -2079813 - L1MC3 LINE L1 -68 7717 7461 1575 116 4 17 chr9 115782814 115783078 -2079549 - AluSx SINE Alu 0 314 54 1335 275 92 18 chr9 115783078 115783286 -2079341 - L1MC3 LINE L1 -324 7461 7194 1903 179 13 18 chr9 115784182 115784563 -2078064 + MLT1B LTR MaLR 1 379 -11 635 258 86 34 chr9 115784727 115784994 -2077633 + MER31B LTR ERV1 146 426 -40 225 178 0 22 chr9 115785456 115785501 -2077126 - MER53 DNA DNA -3 186 143 440 284 10 1 chr9 115785505 115785644 -2076983 + L1MB8 LINE L1 5619 5759 -411 975 249 133 30 chr9 115785658 115786063 -2076564 - MER31B LTR ERV1 -19 447 1 1476 259 29 5 chr9 115786070 115786483 -2076144 + L1MB8 LINE L1 5756 6178 0 232 247 12 25 chr9 115786581 115786662 -2075965 - MER53 DNA DNA -28 161 82 1902 127 0 3 chr9 115787494 115787778 -2074849 - AluSg SINE Alu -6 304 22 1167 247 175 5 chr9 115790200 115790617 -2072010 + MLT1D LTR MaLR 1 488 -17 259 308 47 0 chr9 115793152 115793257 -2069370 + MIR SINE MIR 36 146 -62 357 265 60 17 chr9 115793376 115793493 -2069134 + L1ME4a LINE L1 6000 6121 0 5501 259 45 4 chr9 115794653 115795485 -2067142 + L1ME1 LINE L1 2322 3118 -3028 1991 96 0 0 chr9 115795485 115795755 -2066872 - AluY SINE Alu -11 300 31 5501 259 45 4 chr9 115795755 115796618 -2066009 + L1ME1 LINE L1 3118 4087 -2059 1341 254 68 11 chr9 115796624 115797065 -2065562 + L1ME1 LINE L1 5254 5719 -2276 723 249 68 34 chr9 115797438 115797703 -2064924 + L1ME1 LINE L1 5869 6142 -24 360 0 0 0 chr9 115797792 115797832 -2064795 + (CA)n Simple_repeat Simple_repeat 2 41 0 2047 181 48 23 chr9 115797832 115798268 -2064359 + L1MC3 LINE L1 6649 7095 -690 241 200 15 31 chr9 115798268 115798333 -2064294 + MLT1A2 LTR MaLR 45 108 -459 2086 115 0 3 chr9 115798845 115799140 -2063487 + AluSx SINE Alu 1 294 -18 288 338 7 35 chr9 115801109 115801254 -2061373 + L1ME LINE L1 5621 5761 -360 210 319 22 22 chr9 115801719 115801857 -2060770 + (TGGA)n Simple_repeat Simple_repeat 2 139 0 276 266 83 9 chr9 115803606 115803715 -2058912 - MIR SINE MIR -65 197 81 309 276 23 48 chr9 115803842 115804199 -2058428 + C-rich Low_complexity Low_complexity 1 347 0 2330 242 30 33 chr9 115804350 115804970 -2057657 - L1MB3 LINE L1 0 6183 5607 2194 105 3 0 chr9 115804970 115805266 -2057361 + AluSq SINE Alu 1 297 -16 2330 242 30 33 chr9 115805266 115805416 -2057211 - L1MB3 LINE L1 -576 5607 5458 186 250 109 0 chr9 115805495 115805559 -2057068 - MIR SINE MIR -111 151 81 336 348 0 9 chr9 115806658 115806773 -2055854 + (CA)n Simple_repeat Simple_repeat 1 114 0 427 214 56 16 chr9 115807300 115807426 -2055201 + MLT1A2 LTR MaLR 244 374 0 507 235 70 152 chr9 115807440 115808129 -2054498 - L1MC5 LINE L1 -478 7483 6852 2102 185 35 10 chr9 115808770 115809175 -2053452 + MSTB1 LTR MaLR 15 429 -3 315 71 0 0 chr9 115811052 115811094 -2051533 + (CGTG)n Simple_repeat Simple_repeat 1 42 0 858 269 23 13 chr9 115811182 115811537 -2051090 - L1MC5 LINE L1 -986 6822 6495 308 328 88 49 chr9 115811789 115812176 -2050451 - L1MC4a LINE L1 -1736 6072 5671 1209 224 128 29 chr9 115812230 115812613 -2050014 - MLT1C LTR MaLR 0 467 47 2853 206 9 18 chr9 115812620 115812835 -2049792 - MER41D LTR ERV1 -8 549 334 2118 109 7 0 chr9 115812835 115813129 -2049498 + AluSx SINE Alu 1 296 -16 2853 206 9 18 chr9 115813129 115813467 -2049160 - MER41D LTR ERV1 -223 334 1 374 225 165 11 chr9 115813499 115813614 -2049013 - L1M3 LINE L1 -610 5570 5432 1959 125 16 7 chr9 115813614 115813918 -2048709 - AluSq SINE Alu -6 307 1 1019 85 0 0 chr9 115813918 115814048 -2048579 - AluSq/x SINE Alu -177 135 6 270 215 63 0 chr9 115814056 115814135 -2048492 - L1M3 LINE L1 -2380 5428 5345 414 342 13 7 chr9 115814142 115814297 -2048330 - L2 LINE L2 -16 3297 3142 974 251 14 0 chr9 115814298 115814521 -2048106 - MLT1D LTR MaLR -1 504 279 338 276 96 63 chr9 115814522 115814661 -2047966 - L2 LINE L2 -468 2846 2694 2054 99 27 7 chr9 115814661 115814955 -2047672 + AluSq SINE Alu 1 300 -13 338 276 96 63 chr9 115814955 115815054 -2047573 - L2 LINE L2 -620 2694 2600 243 328 114 0 chr9 115815219 115815350 -2047277 - L2 LINE L2 -785 2529 2384 188 294 33 66 chr9 115815613 115815824 -2046803 - L2 LINE L2 -1463 1851 1648 404 374 76 28 chr9 115817222 115817645 -2044982 + L1ME3A LINE L1 4959 5401 -745 314 375 85 21 chr9 115817659 115817786 -2044841 + L1ME3A LINE L1 5496 5613 -2195 1938 138 0 10 chr9 115817786 115818083 -2044544 - AluJb SINE Alu -14 298 5 314 375 85 21 chr9 115818083 115818190 -2044437 + L1ME3A LINE L1 5613 5745 -2063 1622 288 54 16 chr9 115820989 115821542 -2041085 + MLT1G1 LTR MaLR 3 576 -19 275 324 20 10 chr9 115822078 115822180 -2040447 + L1ME LINE L1 47 149 -5921 1412 292 133 38 chr9 115822229 115822274 -2040353 + L1ME LINE L1 128 167 -5913 2645 133 23 41 chr9 115822274 115822657 -2039970 + MSTA LTR MaLR 1 377 -51 2358 77 0 3 chr9 115822657 115822969 -2039658 + AluY SINE Alu 1 311 0 2645 133 23 41 chr9 115822969 115823021 -2039606 + MSTA LTR MaLR 377 428 0 1412 292 133 38 chr9 115823021 115823324 -2039303 + L1ME LINE L1 167 440 -5640 857 279 118 43 chr9 115823324 115823808 -2038819 + MLT2B1 LTR ERVL 1 520 0 1412 292 133 38 chr9 115823808 115824948 -2037679 + L1ME LINE L1 440 1720 -4360 1630 134 66 80 chr9 115825067 115825541 -2037086 - THE1B LTR MaLR 0 364 1 234 336 8 0 chr9 115825541 115825666 -2036961 + L1ME LINE L1 1910 2035 -4226 2389 61 0 3 chr9 115825667 115825963 -2036664 + AluY SINE Alu 1 295 -16 189 147 0 0 chr9 115825986 115826020 -2036607 + (A)n Simple_repeat Simple_repeat 1 34 0 5944 247 50 57 chr9 115826059 115828578 -2034049 + L1ME LINE L1 2134 4634 -1446 1463 180 39 30 chr9 115828579 115828884 -2033743 + L1MA5 LINE L1 5991 6298 -2 607 239 94 0 chr9 115829127 115829328 -2033299 + L1ME3A LINE L1 5893 6112 -58 1941 243 57 20 chr9 115829584 115830271 -2032356 + L1ME LINE L1 4625 5336 -744 205 356 78 0 chr9 115830827 115830917 -2031710 + MIR SINE MIR 154 250 -12 411 344 55 18 chr9 115831999 115832217 -2030410 + MIR SINE MIR 31 256 -6 2428 110 48 20 chr9 115832647 115833001 -2029626 - THE1B LTR MaLR 0 364 1 11996 96 6 7 chr9 115833001 115834583 -2028044 - THE1B-int LTR MaLR 0 1580 1 2329 119 48 20 chr9 115834583 115834937 -2027690 - THE1B LTR MaLR 0 364 1 353 271 63 59 chr9 115835626 115835847 -2026780 + L2 LINE L2 2638 2859 -455 244 324 77 39 chr9 115836037 115836219 -2026408 + MLT1D LTR MaLR 1 189 -316 639 253 131 4 chr9 115837371 115837616 -2025011 + MLT1D LTR MaLR 207 482 -23 495 305 128 78 chr9 115838040 115838481 -2024146 - L2 LINE L2 -742 2572 2154 1625 92 5 0 chr9 115838481 115838699 -2023928 + AluSc SINE Alu 87 305 -4 495 305 128 78 chr9 115838699 115839760 -2022867 - L2 LINE L2 -1160 2154 996 698 330 62 21 chr9 115840730 115841200 -2021427 + HAL1b LINE L1 621 1109 -239 403 355 32 18 chr9 115841271 115841491 -2021136 - MIR SINE MIR -21 241 19 357 294 75 27 chr9 115841518 115841664 -2020963 + HAL1b LINE L1 1196 1348 0 2513 44 0 0 chr9 115841693 115841989 -2020638 + AluY SINE Alu 9 304 -7 362 109 16 0 chr9 115842000 115842064 -2020563 - L1MB8 LINE L1 -21 6157 6093 2321 223 19 24 chr9 115842075 115842518 -2020109 - L1MB3 LINE L1 0 6183 5742 2109 120 0 0 chr9 115842518 115842826 -2019801 - AluSx SINE Alu 0 312 5 2321 223 19 24 chr9 115842826 115842956 -2019671 - L1MB3 LINE L1 -441 5742 5613 221 319 21 85 chr9 115843195 115843336 -2019291 - MIR SINE MIR -22 240 109 182 329 92 0 chr9 115843877 115843953 -2018674 + MIR3 SINE MIR 82 164 -44 4577 80 7 7 chr9 115844778 115845482 -2017145 - L1P LINE L1 -1151 4995 4292 680 92 9 0 chr9 115845449 115845558 -2017069 + L1P LINE L1 4205 4314 -1832 * 528 190 133 0 chr9 115845558 115845753 -2016874 - L1MB3 LINE L1 -1780 4366 4146 793 107 0 82 chr9 115845798 115845957 -2016670 - L1MA3 LINE L1 0 6305 6160 226 324 182 7 chr9 115846173 115846321 -2016306 + MIR3 SINE MIR 30 203 -5 195 69 0 0 chr9 115846758 115846787 -2015840 + (CAGCC)n Simple_repeat Simple_repeat 3 31 0 27 29 0 0 chr9 115847179 115847213 -2015414 + GC_rich Low_complexity Low_complexity 1 34 0 210 71 0 0 chr9 115848439 115848467 -2014160 + (CA)n Simple_repeat Simple_repeat 1 28 0 376 312 25 32 chr9 115850110 115850267 -2012360 + MIR3 SINE MIR 28 183 -25 1820 140 61 3 chr9 115850628 115850921 -2011706 + AluSx SINE Alu 1 310 -2 39 74 0 0 chr9 115852217 115852298 -2010329 + AT_rich Low_complexity Low_complexity 1 81 0 263 342 26 8 chr9 115852420 115852537 -2010090 - MIR SINE MIR -113 149 31 639 115 0 0 chr9 115852982 115853069 -2009558 + AluS SINE Alu 1 87 -226 344 366 57 23 chr9 115855541 115855988 -2006639 - L1M4c LINE L1 -1232 1511 927 302 294 0 0 chr9 115856710 115856778 -2005849 + MIR SINE MIR 79 146 -62 32 57 0 0 chr9 115858893 115858946 -2003681 + GC_rich Low_complexity Low_complexity 1 53 0 225 188 50 38 chr9 115858976 115859056 -2003571 + (CGGGG)n Simple_repeat Simple_repeat 2 82 0 191 74 19 56 chr9 115859097 115859151 -2003476 + (CGG)n Simple_repeat Simple_repeat 3 54 0 249 33 0 0 chr9 115859439 115859469 -2003158 + (TCC)n Simple_repeat Simple_repeat 2 31 0 21 36 0 0 chr9 115859477 115859505 -2003122 + GC_rich Low_complexity Low_complexity 1 28 0 326 262 32 25 chr9 115859714 115859845 -2002782 - MIR SINE MIR -60 148 33 330 80 0 0 chr9 115861628 115861678 -2000949 + (TG)n Simple_repeat Simple_repeat 2 51 0 414 134 0 0 chr9 115861784 115861851 -2000776 + (TGGA)n Simple_repeat Simple_repeat 2 68 0 447 349 23 29 chr9 115862239 115862448 -2000179 - MIR SINE MIR -56 206 1 657 171 0 20 chr9 115862680 115863176 -1999451 + (CA)n Simple_repeat Simple_repeat 1 486 0 188 286 48 0 chr9 115863466 115863529 -1999098 + MIR3 SINE MIR 123 188 -20 213 156 22 22 chr9 115864191 115864236 -1998391 + CT-rich Low_complexity Low_complexity 3 47 0 406 313 22 56 chr9 115864328 115864507 -1998120 - MER5B DNA MER1_type 0 178 6 683 264 72 38 chr9 115864579 115864814 -1997813 + MIR SINE MIR 18 260 -2 361 191 73 0 chr9 115865628 115865696 -1996931 - L2 LINE L2 -202 3070 2998 189 0 0 0 chr9 115866793 115866814 -1995813 + (GA)n Simple_repeat Simple_repeat 2 22 0 415 162 9 38 chr9 115867297 115867402 -1995225 + CT-rich Low_complexity Low_complexity 1 102 0 340 157 0 24 chr9 115867520 115867603 -1995024 + CT-rich Low_complexity Low_complexity 1 81 0 962 148 0 11 chr9 115867612 115867794 -1994833 + (TCC)n Simple_repeat Simple_repeat 1 180 0 441 180 0 0 chr9 115867794 115867883 -1994744 + CT-rich Low_complexity Low_complexity 2 90 0 26 30 0 0 chr9 115868742 115868775 -1993852 + AT_rich Low_complexity Low_complexity 1 33 0 200 91 0 30 chr9 115870298 115870331 -1992296 + (TG)n Simple_repeat Simple_repeat 1 32 0 185 328 0 0 chr9 115871328 115871386 -1991241 + L3 LINE CR1 1513 1570 -7 231 304 25 0 chr9 115872058 115872137 -1990490 + MER5A DNA MER1_type 88 168 -21 263 276 53 29 chr9 115872186 115872325 -1990302 + MIR3 SINE MIR 68 172 -36 269 26 26 0 chr9 115872362 115872437 -1990190 + (ATTG)n Simple_repeat Simple_repeat 1 115 0 269 26 26 0 chr9 115872437 115872475 -1990152 + (ATTG)n Simple_repeat Simple_repeat 4 42 0 212 308 22 33 chr9 115873353 115873444 -1989183 + MIR3 SINE MIR 112 201 -7 365 324 21 21 chr9 115875280 115875422 -1987205 - MIR SINE MIR -8 254 113 180 77 0 0 chr9 115875509 115875535 -1987092 + (TTCA)n Simple_repeat Simple_repeat 2 27 0 22 0 0 0 chr9 115878214 115878236 -1984391 + GC_rich Low_complexity Low_complexity 1 22 0 387 0 0 0 chr9 115878650 115878693 -1983934 + (GGCTG)n Simple_repeat Simple_repeat 5 47 0 2304 90 3 0 chr9 115879872 115880173 -1982454 + AluSx SINE Alu 3 304 -8 225 222 16 63 chr9 115880177 115880240 -1982387 - MIR SINE MIR -20 242 183 209 227 23 0 chr9 115881491 115881535 -1981092 - MIR SINE MIR -12 250 206 2004 121 0 24 chr9 115883235 115883533 -1979094 - AluSc SINE Alu -18 291 1 189 278 19 0 chr9 115884617 115884671 -1977956 + MIR SINE MIR 68 122 -86 267 282 68 0 chr9 115884978 115885081 -1977546 - MIR SINE MIR -86 176 67 844 257 129 25 chr9 115885337 115885639 -1976988 - MLT1C LTR MaLR -16 451 95 1950 95 82 27 chr9 115885639 115885933 -1976694 - AluSg SINE Alu 0 310 1 844 257 129 25 chr9 115885933 115886034 -1976593 - MLT1C LTR MaLR -372 95 6 529 238 50 22 chr9 115887033 115887214 -1975413 - MER20 DNA MER1_type -2 217 32 239 302 47 28 chr9 115887227 115887333 -1975294 + MIR SINE MIR 38 145 -117 253 246 14 0 chr9 115887762 115887831 -1974796 - MER63 DNA MER1_type -301 759 690 233 352 93 49 chr9 115888170 115888332 -1974295 + L3 LINE CR1 1402 1570 -7 23 0 0 0 chr9 115888473 115888496 -1974131 + AT_rich Low_complexity Low_complexity 1 23 0 207 297 110 0 chr9 115889151 115889242 -1973385 - L2 LINE L2 -2 3311 3211 1966 121 26 10 chr9 115895694 115895958 -1966669 + AluSg SINE Alu 1 259 -143 192 77 0 0 chr9 115895958 115895984 -1966643 + (CAAG)n Simple_repeat Simple_repeat 3 28 0 1096 106 11 6 chr9 115895993 115896172 -1966455 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 1966 121 26 10 chr9 115896172 115896294 -1966333 + AluSg SINE Alu 266 402 0 285 228 0 22 chr9 115896711 115896803 -1965824 - L1M LINE L1 -2453 5355 5266 185 83 28 0 chr9 115896883 115896919 -1965708 + (TG)n Simple_repeat Simple_repeat 2 38 0 1868 128 9 64 chr9 115897319 115897497 -1965130 - AluSx SINE Alu -1 311 158 207 0 0 0 chr9 115897497 115897520 -1965107 + (TG)n Simple_repeat Simple_repeat 2 24 0 1868 128 9 64 chr9 115897520 115897670 -1964957 - AluSx SINE Alu -154 158 1 240 220 0 20 chr9 115898381 115898431 -1964196 + (CA)n Simple_repeat Simple_repeat 1 49 0 310 357 8 23 chr9 115899047 115899176 -1963451 - MIR SINE MIR -62 146 20 208 286 204 0 chr9 115900522 115900620 -1962007 + MIR SINE MIR 64 181 -81 277 204 36 78 chr9 115900759 115900926 -1961701 + (GGGTG)n Simple_repeat Simple_repeat 3 162 0 2731 141 86 21 chr9 115901509 115902119 -1960508 - MER51A LTR ERV1 0 640 23 185 289 36 12 chr9 115902187 115902270 -1960357 + L2 LINE L2 3187 3271 -1 184 336 48 19 chr9 115904097 115904201 -1958426 - L2 LINE L2 -1 3271 3165 198 321 209 16 chr9 115904258 115904569 -1958058 - L2 LINE L2 -1650 1664 1294 200 330 11 21 chr9 115905704 115905798 -1956829 + L3 LINE CR1 1317 1409 -168 323 240 13 0 chr9 115906875 115906950 -1955677 - MLT1J2 LTR MaLR -311 139 64 222 234 0 0 chr9 115907086 115907133 -1955494 + MIR SINE MIR 80 126 -136 812 220 41 29 chr9 115908421 115908666 -1953961 + MLT1D LTR MaLR 27 274 -231 190 255 97 83 chr9 115909347 115909492 -1953135 - MIR3 SINE MIR -19 189 43 226 324 84 67 chr9 115909565 115909790 -1952837 - L2 LINE L2 -2 3270 3042 192 292 62 0 chr9 115910733 115910798 -1951829 + L2 LINE L2 2928 2996 -276 1121 244 43 35 chr9 115910851 115911220 -1951407 - MLT1J LTR MaLR -104 407 36 315 298 84 0 chr9 115912496 115912627 -1950000 + L2 LINE L2 3160 3301 -12 874 125 38 0 chr9 115912631 115913008 -1949619 + (TGGA)n Simple_repeat Simple_repeat 1 391 0 839 117 41 0 chr9 115913025 115913196 -1949431 + (TGGA)n Simple_repeat Simple_repeat 2 179 0 1015 91 29 0 chr9 115913223 115913398 -1949229 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 328 279 121 67 chr9 115913492 115913657 -1948970 + L2 LINE L2 3107 3280 -33 1365 154 68 152 chr9 115913665 115914153 -1948474 + MER66A LTR ERV1 27 473 -5 602 311 138 7 chr9 115914226 115914531 -1948096 + L2 LINE L2 2963 3307 -6 660 228 14 0 chr9 115914637 115914782 -1947845 - MLT1C LTR MaLR -1 466 320 1122 198 41 73 chr9 115914955 115915119 -1947508 - MLT1C LTR MaLR -135 332 183 2278 90 3 0 chr9 115915119 115915429 -1947198 - AluY SINE Alu 0 311 1 1122 198 41 73 chr9 115915429 115915607 -1947020 - MLT1C LTR MaLR -284 183 1 292 339 63 49 chr9 115916815 115917163 -1945464 + L2 LINE L2 2336 2688 -626 268 355 129 14 chr9 115917235 115917522 -1945105 + L2 LINE L2 2911 3230 -83 541 240 144 12 chr9 115917904 115918251 -1944376 - MLT1D LTR MaLR 0 505 82 4145 189 43 49 chr9 115921087 115922047 -1940580 - LTR13 LTR ERVK 0 954 1 1191 241 70 37 chr9 115922111 115922593 -1940034 - MLT1D LTR MaLR -7 498 1 208 231 39 0 chr9 115922903 115922955 -1939672 + L2 LINE L2 2228 2281 -1033 320 325 59 0 chr9 115925115 115925284 -1937343 + MIR SINE MIR 63 241 -21 276 258 0 0 chr9 115925739 115925836 -1936791 + (CA)n Simple_repeat Simple_repeat 2 98 0 323 349 23 8 chr9 115926248 115926377 -1936250 - MER5A DNA MER1_type -41 148 18 289 296 97 83 chr9 115926675 115927026 -1935601 - MLT1J LTR MaLR -19 492 137 2150 125 0 3 chr9 115927251 115927564 -1935063 + AluSx SINE Alu 1 312 0 560 125 10 0 chr9 115928680 115928776 -1933851 + (TTCC)n Simple_repeat Simple_repeat 3 99 0 564 287 115 19 chr9 115928856 115929065 -1933562 - MIR SINE MIR -32 230 2 1984 128 0 3 chr9 115929075 115929364 -1933263 - AluSc SINE Alu -21 288 1 237 65 0 0 chr9 115929403 115929434 -1933193 + (GAA)n Simple_repeat Simple_repeat 2 32 0 409 321 0 0 chr9 115930848 115930960 -1931667 - MIR SINE MIR -48 214 103 226 309 117 0 chr9 115931076 115931170 -1931457 - MIR3 SINE MIR -22 186 82 251 324 14 0 chr9 115931474 115931548 -1931079 - L2 LINE L2 -80 3192 3118 349 300 19 62 chr9 115931599 115931728 -1930899 - MIR SINE MIR -66 142 43 553 320 39 3 chr9 115931850 115932134 -1930493 + L1MEc LINE L1 267 560 -5836 1038 313 77 55 chr9 115932172 115932929 -1929698 + L1MEc LINE L1 630 1446 -4950 2057 121 0 55 chr9 115932929 115933259 -1929368 + AluSx SINE Alu 1 312 0 1038 313 77 55 chr9 115933259 115933577 -1929050 + L1MEc LINE L1 1446 1756 -4640 209 81 0 27 chr9 115933709 115933746 -1928881 + (CACAC)n Simple_repeat Simple_repeat 1 36 0 333 212 21 98 chr9 115933769 115933962 -1928665 + (CACAC)n Simple_repeat Simple_repeat 1 178 0 890 197 63 36 chr9 115935310 115935622 -1927005 - MLT1F1 LTR MaLR -16 551 179 501 71 0 0 chr9 115935624 115935694 -1926933 + (GA)n Simple_repeat Simple_repeat 2 71 0 196 278 104 26 chr9 115935826 115935941 -1926686 - MIR SINE MIR -116 146 23 * 204 362 28 43 chr9 115935926 115936067 -1926560 + MIR SINE MIR 15 153 -109 317 262 65 9 chr9 115936809 115936916 -1925711 - MLT1J2 LTR MaLR -302 148 36 528 268 208 15 chr9 115937385 115937921 -1924706 + L2 LINE L2 2673 3308 -5 245 312 21 0 chr9 115940256 115940349 -1922278 - MLT1I LTR MaLR -31 378 284 192 204 0 53 chr9 115940471 115940584 -1922043 + CT-rich Low_complexity Low_complexity 4 110 0 305 253 35 13 chr9 115940695 115940800 -1921827 + MLT1D LTR MaLR 69 183 -322 516 203 0 1 chr9 115940800 115940919 -1921708 + MLT1D LTR MaLR 350 505 0 381 356 56 70 chr9 115940922 115941143 -1921484 - L1ME LINE L1 -439 5682 5464 1849 148 7 0 chr9 115941143 115941433 -1921194 + AluJo SINE Alu 1 292 -20 381 356 56 70 chr9 115941433 115941495 -1921132 - L1ME LINE L1 -657 5464 5403 1983 271 82 16 chr9 115941535 115942333 -1920294 - L1ME LINE L1 -814 5332 4459 922 27 53 0 chr9 115942333 115942483 -1920144 + (TCTA)n Simple_repeat Simple_repeat 1 158 0 1983 271 82 16 chr9 115942483 115942638 -1919989 - L1ME LINE L1 -1687 4459 4316 407 289 94 50 chr9 115943585 115943744 -1918883 - MIR3 SINE MIR -3 205 40 319 314 58 58 chr9 115943807 115943878 -1918749 + L3 LINE CR1 1426 1499 -78 577 309 107 37 chr9 115943878 115944121 -1918506 - MIR SINE MIR -1 261 2 319 314 58 58 chr9 115944121 115944186 -1918441 + L3 LINE CR1 1498 1562 -15 1471 263 92 26 chr9 115944242 115944817 -1917810 - MLT1E2 LTR MaLR -1 625 13 372 289 105 25 chr9 115945119 115945358 -1917269 + ERVL LTR ERVL 4019 4276 -1488 1210 250 74 31 chr9 115945371 115945624 -1917003 + MLT1C LTR MaLR 1 283 -184 8429 54 5 4 chr9 115945624 115946630 -1915997 - LTR13 LTR ERVK 0 1007 1 1210 250 74 31 chr9 115946630 115946824 -1915803 + MLT1C LTR MaLR 283 467 0 241 214 17 26 chr9 115948180 115948297 -1914330 + CT-rich Low_complexity Low_complexity 2 117 0 378 275 78 0 chr9 115948962 115949104 -1913523 + MIR3 SINE MIR 14 166 -42 828 228 144 48 chr9 115949206 115949601 -1913026 + MLT1C LTR MaLR 19 451 -16 278 344 106 25 chr9 115950508 115950668 -1911959 - MIR SINE MIR -71 191 19 213 239 0 0 chr9 115951897 115951943 -1910684 + L3 LINE CR1 1414 1459 -118 210 312 26 13 chr9 115951970 115952047 -1910580 - MIR3 SINE MIR -5 203 126 380 339 59 17 chr9 115954397 115954754 -1907873 - L1MEc LINE L1 -5753 643 272 558 253 30 20 chr9 115954756 115954958 -1907669 - L1MEc LINE L1 -6155 241 38 262 323 138 0 chr9 115957675 115957892 -1904735 + L2 LINE L2 2842 3088 -225 3018 233 53 19 chr9 115958515 115960704 -1901923 + L1MD1 LINE L1 1697 4372 -1843 1820 197 19 3 chr9 115960704 115961079 -1901548 - MLT1B LTR MaLR -6 384 4 346 276 23 0 chr9 115961079 115961166 -1901461 + L1MD1 LINE L1 4371 4459 -1756 234 328 87 34 chr9 115961319 115961584 -1901043 + L2 LINE L2 2239 2517 -797 183 430 26 0 chr9 115961925 115962039 -1900588 + L2 LINE L2 3191 3307 -6 204 213 0 0 chr9 115962144 115962205 -1900422 + CT-rich Low_complexity Low_complexity 1 61 0 301 299 55 55 chr9 115962854 115963018 -1899609 + MER5B DNA MER1_type 14 177 -1 2180 84 14 0 chr9 115963213 115963498 -1899129 - AluSx SINE Alu -23 289 1 2224 104 3 3 chr9 115964982 115965291 -1897336 - AluSc SINE Alu 0 309 1 185 225 0 0 chr9 115965381 115965421 -1897206 - MIR SINE MIR -114 148 109 835 236 21 12 chr9 115965440 115965682 -1896945 + L1MD1 LINE L1 5519 5762 -549 316 268 12 0 chr9 115965692 115965774 -1896853 + L1MD1 LINE L1 5866 5948 -363 596 265 16 16 chr9 115966100 115966289 -1896338 - MLT2B1 LTR ERVL 0 520 332 320 232 21 53 chr9 115966266 115966361 -1896266 - MLT2B3 LTR ERVL -280 274 183 * 975 203 97 0 chr9 115966359 115966596 -1896031 + LTR42 LTR ERVL 10 269 -226 987 210 23 42 chr9 115966927 115967189 -1895438 + LTR42 LTR ERVL 239 495 0 232 364 0 0 chr9 115967843 115967931 -1894696 + (CA)n Simple_repeat Simple_repeat 1 88 0 449 243 110 6 chr9 115970816 115970989 -1891638 + MER20 DNA MER1_type 29 219 0 21 57 0 0 chr9 115971488 115971523 -1891104 + AT_rich Low_complexity Low_complexity 1 35 0 292 285 15 31 chr9 115971530 115971660 -1890967 + (CA)n Simple_repeat Simple_repeat 1 128 0 812 220 41 29 chr9 115973104 115973349 -1889278 + MLT1D LTR MaLR 27 274 -231 190 255 97 83 chr9 115974025 115974170 -1888457 - MIR3 SINE MIR -19 189 43 226 324 84 67 chr9 115974243 115974468 -1888159 - L2 LINE L2 -2 3270 3042 192 292 62 0 chr9 115975411 115975476 -1887151 + L2 LINE L2 2928 2996 -276 1121 244 43 35 chr9 115975529 115975898 -1886729 - MLT1J LTR MaLR -104 407 36 315 298 84 0 chr9 115977174 115977305 -1885322 + L2 LINE L2 3160 3301 -12 874 128 40 0 chr9 115977309 115977800 -1884827 + (TGGA)n Simple_repeat Simple_repeat 1 510 0 265 327 0 28 chr9 115977814 115977921 -1884706 + C-rich Low_complexity Low_complexity 2 105 0 199 278 150 69 chr9 115979509 115979682 -1882945 + L2 LINE L2 3082 3268 -4 276 244 12 0 chr9 115980779 115980865 -1881762 - MER117 DNA MER1_type -44 153 67 2631 107 6 8 chr9 115981390 115981755 -1880872 - THE1B LTR MaLR 0 364 1 340 344 74 11 chr9 115982501 115982690 -1879937 - L1ME3A LINE L1 -224 5946 5746 390 74 0 0 chr9 115982777 115982831 -1879796 + (TG)n Simple_repeat Simple_repeat 2 55 0 1777 142 36 7 chr9 115984802 115985145 -1877482 - AluJo SINE Alu 0 351 1 197 324 27 0 chr9 115986710 115986784 -1875843 - L2 LINE L2 -2140 1174 1099 363 368 49 5 chr9 115987309 115987532 -1875095 - MIR SINE MIR -16 246 14 184 326 0 54 chr9 115988391 115988483 -1874144 - MER5A DNA MER1_type -48 141 55 818 252 103 3 chr9 115990537 115990858 -1871769 + MLT1A1 LTR MaLR 13 365 0 214 254 225 49 chr9 115990902 115991114 -1871513 - L2 LINE L2 -287 3026 2781 519 306 0 0 chr9 115991420 115991845 -1870782 + (TG)n Simple_repeat Simple_repeat 1 425 0 851 234 54 50 chr9 115992875 115992911 -1869716 - MER58A DNA MER1_type -2197 223 189 1941 138 7 0 chr9 115992911 115993202 -1869425 + AluSq SINE Alu 1 293 -20 851 234 54 50 chr9 115993202 115993387 -1869240 - MER58A DNA MER1_type -2231 189 1 250 339 63 24 chr9 115993395 115993522 -1869105 - MIR SINE MIR -72 190 59 447 273 70 12 chr9 115993619 115993791 -1868836 - MLT2B1 LTR ERVL 0 520 339 1951 162 211 20 chr9 115993795 115994202 -1868425 + MER66B LTR ERV1 1 485 -1 398 266 28 0 chr9 115994233 115994342 -1868285 + MER58B DNA MER1_type 201 312 -29 848 143 0 0 chr9 115994342 115994468 -1868159 - AluSg/x SINE Alu -15 297 172 564 290 63 5 chr9 115994470 115994677 -1867950 - MLT2B2 LTR ERVL -296 219 1 191 318 30 0 chr9 115994712 115994778 -1867849 - MIR SINE MIR -106 156 89 484 167 10 10 chr9 115995354 115995450 -1867177 - MLT1B LTR MaLR -21 369 274 207 300 25 12 chr9 115996108 115996188 -1866439 - L2 LINE L2 -16 3256 3176 215 292 115 18 chr9 115996729 115996842 -1865785 - L2 LINE L2 -221 3051 2928 182 319 33 44 chr9 115998642 115998733 -1863894 + L2 LINE L2 2875 2964 -350 335 315 40 47 chr9 115999846 115999995 -1862632 + L1MEc LINE L1 262 409 -5987 326 335 68 11 chr9 116000154 116000330 -1862297 + L1MEc LINE L1 1670 1855 -4541 329 317 19 6 chr9 116000338 116000499 -1862128 + L1MC4 LINE L1 7413 7575 -467 257 288 12 0 chr9 116000643 116000723 -1861904 + L1MC4 LINE L1 7593 7673 -369 262 256 150 0 chr9 116001057 116001174 -1861453 + MIR SINE MIR 50 192 -67 2191 221 50 61 chr9 116003049 116003609 -1859018 + MLT2B3 LTR ERVL 1 554 0 347 333 51 13 chr9 116004522 116004678 -1857949 + L1MC4 LINE L1 5594 5755 -2053 23 0 0 0 chr9 116009632 116009655 -1852972 + AT_rich Low_complexity Low_complexity 1 23 0 369 254 8 49 chr9 116010188 116010310 -1852317 - MLT1C LTR MaLR -1 466 350 228 245 88 61 chr9 116010377 116010524 -1852103 - MLT1C LTR MaLR -257 248 98 242 353 8 8 chr9 116011118 116011240 -1851387 + (TG)n Simple_repeat Simple_repeat 2 123 0 341 210 25 0 chr9 116012686 116012767 -1849860 + MER31B LTR ERV1 7 89 -377 2230 45 8 0 chr9 116012772 116013101 -1849526 - AluY SINE Alu 0 347 17 1736 223 30 58 chr9 116013173 116013675 -1848952 + MLT2B3 LTR ERVL 1 488 -66 955 94 23 10 chr9 116013686 116014089 -1848538 + (TAGA)n Simple_repeat Simple_repeat 1 408 0 305 247 10 62 chr9 116014089 116014186 -1848441 + L1MC4 LINE L1 6612 6703 -1339 234 0 0 0 chr9 116014186 116014212 -1848415 + (CATA)n Simple_repeat Simple_repeat 4 29 0 317 148 0 0 chr9 116014212 116014266 -1848361 + MLT2A2 LTR ERVL 400 453 0 1487 212 72 12 chr9 116014792 116015193 -1847434 - MER67A LTR ERV1 -10 533 109 316 210 92 42 chr9 116015560 116015679 -1846948 + MER65A LTR ERV1 1 125 -320 266 338 52 52 chr9 116015687 116016051 -1846576 + MER65A LTR ERV1 80 443 -2 378 275 247 0 chr9 116016800 116016982 -1845645 + LTR67 LTR ERVL 117 343 -214 * 4346 155 130 31 chr9 116016965 116018019 -1844608 + MER52C LTR ERV1 22 1278 0 323 291 18 0 chr9 116018700 116018810 -1843817 + LTR33 LTR ERVL 110 221 -300 241 170 0 0 chr9 116019434 116019481 -1843146 - MER117 DNA MER1_type -107 90 44 2134 104 43 0 chr9 116019513 116019812 -1842815 + AluSx SINE Alu 1 312 0 273 313 25 0 chr9 116020650 116020730 -1841897 - MIR SINE MIR -89 173 92 2378 63 0 3 chr9 116020732 116021035 -1841592 + AluY SINE Alu 1 302 -9 285 232 174 39 chr9 116021093 116021248 -1841379 + MLT1D LTR MaLR 35 210 -295 600 236 83 0 chr9 116021276 116021433 -1841194 + MLT1D LTR MaLR 288 457 -48 204 272 25 62 chr9 116021815 116021896 -1840731 + MIR3 SINE MIR 117 194 -14 708 185 98 29 chr9 116022346 116022519 -1840108 + MER53 DNA DNA 1 185 -4 258 288 0 0 chr9 116023308 116023374 -1839253 + CT-rich Low_complexity Low_complexity 4 69 0 272 338 44 44 chr9 116024793 116024929 -1837698 + L2 LINE L2 3136 3271 -1 2429 74 0 3 chr9 116024982 116025294 -1837333 + AluY SINE Alu 1 311 0 193 287 77 63 chr9 116025572 116025715 -1836912 - MIR3 SINE MIR -63 145 1 249 33 0 0 chr9 116025917 116025947 -1836680 + (TGAA)n Simple_repeat Simple_repeat 2 31 0 224 274 84 0 chr9 116026543 116026638 -1835989 + MIR SINE MIR 46 148 -60 416 301 153 6 chr9 116027330 116027493 -1835134 + MIR SINE MIR 30 216 -46 184 339 15 0 chr9 116029082 116029147 -1833480 - L2 LINE L2 -1 3312 3247 255 170 0 21 chr9 116030034 116030081 -1832546 + (CCA)n Simple_repeat Simple_repeat 2 47 0 360 325 77 5 chr9 116033391 116033600 -1829027 - L2 LINE L2 -221 3051 2828 587 221 25 104 chr9 116034532 116034576 -1828051 - MER31B LTR ERV1 -1 465 419 1972 107 0 7 chr9 116034576 116034848 -1827779 + AluSx SINE Alu 39 308 -4 587 221 25 104 chr9 116034848 116035043 -1827584 - MER31B LTR ERV1 -47 419 245 313 293 17 17 chr9 116035611 116035727 -1826900 + (CA)n Simple_repeat Simple_repeat 1 116 0 447 291 11 33 chr9 116035806 116035988 -1826639 + (CA)n Simple_repeat Simple_repeat 1 178 0 371 263 21 18 chr9 116036034 116036369 -1826258 + (CA)n Simple_repeat Simple_repeat 1 336 0 457 335 55 55 chr9 116038205 116038462 -1824165 - MIR SINE MIR -4 258 2 312 246 159 0 chr9 116039541 116039667 -1822960 - MIR3 SINE MIR -11 197 52 243 0 0 0 chr9 116039757 116039784 -1822843 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 205 354 115 0 chr9 116039784 116039880 -1822747 - L2 LINE L2 -29 3243 3137 1465 235 140 17 chr9 116040644 116041107 -1821520 + MLT2B1 LTR ERVL 1 520 0 361 358 53 5 chr9 116041217 116041424 -1821203 + MIR SINE MIR 32 248 -14 581 337 121 30 chr9 116041997 116042569 -1820058 + L2 LINE L2 2034 2657 -657 680 234 83 48 chr9 116042734 116043024 -1819603 - MLT1D LTR MaLR -10 495 196 2350 91 3 0 chr9 116044958 116045266 -1817361 + AluY SINE Alu 2 310 -1 305 323 10 0 chr9 116045337 116045433 -1817194 - MIR SINE MIR -59 203 107 449 246 0 60 chr9 116046521 116046655 -1815972 + MIR SINE MIR 35 160 -102 347 270 40 32 chr9 116046747 116046873 -1815754 - MIR SINE MIR -102 160 34 759 234 29 0 chr9 116046936 116047111 -1815516 + MER3 DNA MER1_type 1 180 -29 355 286 82 86 chr9 116048445 116048714 -1813913 - L2 LINE L2 -3 3269 3002 233 188 0 0 chr9 116049647 116049695 -1812932 + L2 LINE L2 3265 3312 -1 591 266 173 7 chr9 116050094 116050365 -1812262 - MER5C DNA MER1_type -3 321 6 347 322 0 38 chr9 116051190 116051373 -1811254 + (CACG)n Simple_repeat Simple_repeat 3 178 0 304 345 0 39 chr9 116051440 116051810 -1810817 + (CACG)n Simple_repeat Simple_repeat 1 355 0 378 318 0 28 chr9 116051816 116051995 -1810632 + (CA)n Simple_repeat Simple_repeat 1 174 0 228 247 52 26 chr9 116052162 116052239 -1810388 - MIR SINE MIR -91 171 93 219 318 82 9 chr9 116052528 116052638 -1809989 + MIR3 SINE MIR 88 205 -3 217 129 29 29 chr9 116052823 116052893 -1809734 + (TCTCTG)n Simple_repeat Simple_repeat 6 75 0 747 152 0 0 chr9 116052895 116053073 -1809554 + CT-rich Low_complexity Low_complexity 2 179 0 579 346 77 6 chr9 116053421 116053947 -1808680 + L1ME LINE L1 5205 5781 -383 291 165 51 51 chr9 116054446 116054525 -1808102 + MIR3 SINE MIR 108 186 -22 700 330 14 8 chr9 116056242 116056609 -1806018 + Harlequin LTR ERV1 1686 2054 -5731 203 237 0 51 chr9 116056611 116056670 -1805957 + GA-rich Low_complexity Low_complexity 5 60 0 999 150 41 23 chr9 116056680 116056900 -1805727 + LTR18B LTR ERVL 261 484 -130 275 130 0 0 chr9 116056899 116056945 -1805682 + LTR18B LTR ERVL 221 266 -348 * 341 299 6 37 chr9 116056952 116057116 -1805511 + GA-rich Low_complexity Low_complexity 1 159 0 2391 347 44 25 chr9 116057160 116058784 -1803843 + Harlequin LTR ERV1 2851 5541 -2244 1861 116 6 47 chr9 116058784 116059104 -1803523 + AluY SINE Alu 1 307 -4 2391 347 44 25 chr9 116059104 116059327 -1803300 + Harlequin LTR ERV1 5541 5758 -2027 586 327 33 60 chr9 116060062 116060163 -1802464 + Harlequin LTR ERV1 3368 3470 -3426 2062 98 30 24 chr9 116060163 116060460 -1802167 - AluSx SINE Alu -13 299 1 586 327 33 60 chr9 116060460 116061064 -1801563 + Harlequin LTR ERV1 3470 4054 -2842 544 281 63 56 chr9 116061773 116062288 -1800339 - MER34 LTR ERV1 0 542 5 189 0 0 0 chr9 116063459 116063480 -1799147 + (TGAG)n Simple_repeat Simple_repeat 1 21 0 1241 263 71 60 chr9 116063500 116063678 -1798949 - MER34 LTR ERV1 -3 539 365 2298 93 3 6 chr9 116063678 116063989 -1798638 - AluSx SINE Alu -2 310 1 1241 263 71 60 chr9 116063989 116064343 -1798284 - MER34 LTR ERV1 -177 365 1 278 189 19 0 chr9 116064760 116064813 -1797814 + MER34 LTR ERV1 1 54 -488 340 252 81 16 chr9 116064957 116065080 -1797547 + LTR48 LTR ERV1 483 613 -174 208 147 0 0 chr9 116065791 116065825 -1796802 + (TTCA)n Simple_repeat Simple_repeat 2 35 0 200 191 0 0 chr9 116066775 116066817 -1795810 + C-rich Low_complexity Low_complexity 1 42 0 216 135 0 0 chr9 116069242 116069279 -1793348 + (CA)n Simple_repeat Simple_repeat 1 37 0 889 136 30 8 chr9 116069351 116069729 -1792898 + (TGGA)n Simple_repeat Simple_repeat 1 386 0 251 355 0 11 chr9 116070241 116070334 -1792293 + MIR SINE MIR 13 104 -158 2788 93 3 3 chr9 116070346 116070710 -1791917 + THE1B LTR MaLR 1 364 0 235 326 62 23 chr9 116071605 116071734 -1790893 + MIR SINE MIR 89 222 -40 1795 168 0 0 chr9 116072046 116072326 -1790301 + AluJb SINE Alu 1 280 -32 808 80 24 0 chr9 116072328 116072453 -1790174 + (GAAA)n Simple_repeat Simple_repeat 2 129 0 1470 280 31 4 chr9 116072794 116073305 -1789322 + MER90 LTR ERV1 90 614 0 220 335 66 7 chr9 116073358 116073510 -1789117 + L2 LINE L2 2954 3114 -158 727 236 46 54 chr9 116074459 116074692 -1787935 + L1MC2 LINE L1 4926 5159 -987 784 234 19 0 chr9 116074692 116074846 -1787781 + FRAM SINE Alu 1 157 -9 2119 125 0 3 chr9 116074852 116075157 -1787470 + AluSx SINE Alu 1 304 -8 727 236 46 54 chr9 116075157 116075196 -1787431 + L1MC2 LINE L1 5164 5203 -943 2142 84 0 39 chr9 116075197 116075507 -1787120 + AluY SINE Alu 1 298 -13 1046 198 30 117 chr9 116075520 116075748 -1786879 + L1MC2 LINE L1 5771 5864 -480 2364 186 58 0 chr9 116075748 116076183 -1786444 + LOR1b LTR ERV1 2 461 0 1046 198 30 117 chr9 116076183 116076348 -1786279 + L1MC2 LINE L1 5864 6042 -302 1970 117 3 69 chr9 116076393 116076727 -1785900 - AluSx SINE Alu 0 312 1 233 160 0 80 chr9 116077626 116077676 -1784951 - L2 LINE L2 -3 3310 3265 206 250 26 13 chr9 116081515 116081591 -1781036 + C-rich Low_complexity Low_complexity 1 77 0 532 122 0 20 chr9 116082369 116082467 -1780160 + (TTCC)n Simple_repeat Simple_repeat 3 98 0 1181 282 94 31 chr9 116082500 116082591 -1780036 - L1MC4 LINE L1 -6 8036 7952 414 39 0 0 chr9 116082591 116082643 -1779984 + (TC)n Simple_repeat Simple_repeat 1 52 0 1181 282 94 31 chr9 116082643 116083158 -1779469 - L1MC4 LINE L1 -90 7952 7392 211 189 0 0 chr9 116083275 116083312 -1779315 + CT-rich Low_complexity Low_complexity 2 38 0 240 342 148 15 chr9 116083313 116083719 -1778908 - L1MC4 LINE L1 -1815 5993 5534 2321 98 0 13 chr9 116083942 116084257 -1778370 - AluSx SINE Alu -1 311 1 2057 138 0 10 chr9 116084346 116084658 -1777969 - AluSx SINE Alu -3 309 1 698 269 136 10 chr9 116086320 116086628 -1775999 - MER67B LTR ERV1 -2 659 313 1249 294 58 60 chr9 116086743 116087636 -1774991 + L1M4 LINE L1 2366 3256 -2890 2149 129 0 0 chr9 116087636 116087930 -1774697 + AluSx SINE Alu 2 295 -17 1249 294 58 60 chr9 116087930 116088616 -1774011 + L1M4 LINE L1 3256 3942 -2204 2065 131 0 7 chr9 116089036 116089334 -1773293 + AluSq SINE Alu 3 298 -15 430 280 168 10 chr9 116089567 116090182 -1772445 + L1MEd LINE L1 781 1514 -4656 309 151 0 0 chr9 116090282 116090335 -1772292 + (ATG)n Simple_repeat Simple_repeat 1 53 0 469 330 35 6 chr9 116090335 116090508 -1772119 - MIR SINE MIR -3 259 82 417 257 36 36 chr9 116090611 116090751 -1771876 - MIR SINE MIR -27 235 96 673 145 14 29 chr9 116090768 116091052 -1771575 + (TGGA)n Simple_repeat Simple_repeat 1 279 0 548 188 8 0 chr9 116091065 116091198 -1771429 + (TGGA)n Simple_repeat Simple_repeat 1 134 0 449 262 6 15 chr9 116093522 116093858 -1768769 + (TG)n Simple_repeat Simple_repeat 1 333 0 422 315 0 7 chr9 116094148 116094291 -1768336 + (TG)n Simple_repeat Simple_repeat 2 143 0 2268 103 0 0 chr9 116094795 116095096 -1767531 + AluSc SINE Alu 1 301 -8 342 320 50 0 chr9 116095389 116095489 -1767138 + MER91C DNA MER1_type 36 140 0 352 283 90 7 chr9 116095833 116095978 -1766649 + L1ME4a LINE L1 5916 6072 -49 187 310 70 0 chr9 116098593 116098664 -1763963 + MIR SINE MIR 117 192 -70 249 236 83 0 chr9 116100171 116100243 -1762384 - MIR SINE MIR -80 182 105 236 292 62 9 chr9 116100416 116100529 -1762098 + (CATG)n Simple_repeat Simple_repeat 3 121 0 210 362 29 17 chr9 116102084 116102258 -1760369 + (CGTG)n Simple_repeat Simple_repeat 4 179 0 * 403 335 0 27 chr9 116102156 116102341 -1760286 + (TG)n Simple_repeat Simple_repeat 1 180 0 414 212 13 7 chr9 116103352 116103503 -1759124 + (TCCA)n Simple_repeat Simple_repeat 4 155 0 612 161 21 0 chr9 116103559 116103702 -1758925 + (TCCA)n Simple_repeat Simple_repeat 1 146 0 919 126 6 22 chr9 116103738 116103921 -1758706 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 215 263 32 74 chr9 116103994 116104089 -1758538 - L2 LINE L2 -53 3219 3129 450 0 0 0 chr9 116104932 116104982 -1757645 + (TG)n Simple_repeat Simple_repeat 2 51 0 484 218 54 0 chr9 116105138 116105285 -1757342 - MER20 DNA MER1_type -17 202 48 259 303 45 0 chr9 116107273 116107362 -1755265 - MER45A DNA AcHobo -3 175 83 253 301 158 0 chr9 116107626 116107761 -1754866 + MIR3 SINE MIR 11 164 -58 1379 122 73 167 chr9 116108932 116109202 -1753425 - MER4B LTR ERV1 -186 424 215 2170 103 3 7 chr9 116109202 116109503 -1753124 - AluSq SINE Alu -13 300 1 1379 122 73 167 chr9 116109503 116109700 -1752927 - MER4B LTR ERV1 -395 215 1 923 221 33 0 chr9 116109864 116110077 -1752550 + MLT2B1 LTR ERVL 293 512 -8 562 298 47 16 chr9 116110175 116110430 -1752197 + HERVL LTR ERVL 4041 4303 -1351 1484 205 54 19 chr9 116110538 116110908 -1751719 - MLT1B LTR MaLR -7 383 1 544 312 52 17 chr9 116110909 116111140 -1751487 - MER76 LTR ERV -102 586 348 286 259 28 46 chr9 116111178 116111286 -1751341 - MER76 LTR ERV -439 249 144 255 385 37 0 chr9 116111664 116111960 -1750667 + HERVL LTR ERVL 4706 5012 -642 356 311 157 24 chr9 116113545 116113915 -1748712 + LTR16A LTR ERVL 26 444 -6 428 314 120 6 chr9 116114352 116114527 -1748100 + MIR SINE MIR 13 207 -55 556 255 36 5 chr9 116114711 116114903 -1747724 - MLT1C LTR MaLR 0 467 270 1325 218 36 79 chr9 116115843 116115937 -1746690 + L1M4 LINE L1 4681 4778 -1368 2011 133 0 0 chr9 116115937 116116261 -1746366 - AluSx SINE Alu 0 312 1 1325 218 36 79 chr9 116116261 116116671 -1745956 + L1M4 LINE L1 4778 5163 -983 181 309 99 25 chr9 116116688 116116769 -1745858 + L2 LINE L2 3227 3313 0 772 301 16 58 chr9 116116845 116117347 -1745280 + L1M4 LINE L1 3924 4404 -1742 1646 141 7 49 chr9 116117471 116117777 -1744850 + MER4A LTR ERV1 372 664 0 627 296 50 92 chr9 116117778 116118095 -1744532 + L1M4 LINE L1 4405 4708 -1438 2184 108 0 10 chr9 116118118 116118415 -1744212 + AluSx SINE Alu 1 294 -18 2778 268 85 12 chr9 116118423 116120145 -1742482 + L1ME3 LINE L1 4085 5943 -219 781 259 15 15 chr9 116120148 116120422 -1742205 + L1MD1 LINE L1 3374 3647 -2499 1685 166 39 19 chr9 116120423 116120646 -1741981 + MLT2B1 LTR ERVL 1 218 -297 432 0 0 0 chr9 116120646 116120694 -1741933 + (TC)n Simple_repeat Simple_repeat 2 49 0 1685 166 39 19 chr9 116120694 116120890 -1741737 + MLT2B1 LTR ERVL 218 475 -40 318 235 59 0 chr9 116120890 116120975 -1741652 + L1MD1 LINE L1 3643 3732 -2414 * 381 233 139 79 chr9 116120971 116121186 -1741441 + L1ME3 LINE L1 5934 6161 -1 222 146 21 21 chr9 116121860 116121908 -1740719 + (CACCC)n Simple_repeat Simple_repeat 3 50 0 211 314 93 43 chr9 116122689 116122829 -1739798 - MIR SINE MIR -21 241 95 1770 226 45 57 chr9 116123644 116124327 -1738300 + L1MD1 LINE L1 4482 5156 -990 2957 212 30 25 chr9 116124435 116125245 -1737382 + L1MD1 LINE L1 5429 6242 0 188 312 91 0 chr9 116125371 116125448 -1737179 + L2 LINE L2 3210 3293 -20 328 350 34 0 chr9 116125562 116125679 -1736948 + L1MC/D LINE L1 5700 5820 -1988 671 51 0 0 chr9 116125747 116125851 -1736776 - AluSg/x SINE Alu 0 312 209 295 344 53 33 chr9 116126119 116126270 -1736357 - L3 LINE CR1 -193 1384 1231 391 247 22 0 chr9 116126320 116126409 -1736218 - L1MB1 LINE L1 -19 6149 6059 540 250 36 58 chr9 116126889 116127113 -1735514 - MER96B DNA MER1_type? 0 417 199 182 292 62 0 chr9 116127790 116127855 -1734772 + MIR SINE MIR 29 97 -165 2448 216 54 6 chr9 116127986 116128615 -1734012 + L1MB8 LINE L1 5520 6178 0 456 238 0 0 chr9 116131123 116131297 -1731330 + (CA)n Simple_repeat Simple_repeat 1 174 0 181 262 0 0 chr9 116131832 116131874 -1730753 + L2 LINE L2 3271 3312 -1 343 346 25 0 chr9 116134044 116134206 -1728421 + L1MD3 LINE L1 7058 7223 -772 1311 303 57 47 chr9 116134221 116134920 -1727707 + L1MC4a LINE L1 7102 7807 -1 984 356 55 3 chr9 116138513 116138624 -1724003 - HERV16 LTR ERVL -1906 3090 2986 2833 82 6 6 chr9 116138624 116138988 -1723639 + THE1B LTR MaLR 1 364 0 984 356 55 3 chr9 116138988 116139465 -1723162 - HERV16 LTR ERVL -2010 2986 2612 361 284 85 51 chr9 116139615 116139851 -1722776 - MLT1H1 LTR MaLR -311 244 1 2144 98 3 7 chr9 116140739 116141034 -1721593 - AluSx SINE Alu -16 296 3 457 303 7 0 chr9 116141670 116141815 -1720812 - MLT1A2 LTR MaLR 0 374 229 226 254 32 0 chr9 116141806 116141869 -1720758 - MLT1A2 LTR MaLR -317 79 15 * 589 212 36 30 chr9 116142109 116142274 -1720353 + L1MB3 LINE L1 5979 6144 -39 309 287 0 0 chr9 116142276 116142573 -1720054 + (GAATG)n Satellite Satellite 1 297 0 234 322 0 0 chr9 116142311 116142488 -1720139 + (CTAGG)n Simple_repeat Simple_repeat 4 180 0 * 1011 161 0 0 chr9 116142610 116142771 -1719856 + AluJb SINE Alu 135 295 -17 1079 148 0 16 chr9 116143786 116144325 -1718302 + (CACCAT)n Simple_repeat Simple_repeat 1 358 0 259 341 0 0 chr9 116144509 116144594 -1718033 - MIR SINE MIR -24 238 154 353 332 56 3 chr9 116144930 116145114 -1717513 - MIR3 SINE MIR -35 173 27 387 0 0 0 chr9 116145596 116145639 -1716988 + (CA)n Simple_repeat Simple_repeat 2 44 0 680 271 64 99 chr9 116146260 116146684 -1715943 + L1MB7 LINE L1 5776 6184 0 1997 120 41 0 chr9 116146695 116146986 -1715641 + AluSx SINE Alu 1 303 -9 239 321 0 27 chr9 116146997 116147109 -1715518 + L1ME LINE L1 5583 5691 -430 255 393 107 6 chr9 116148298 116148466 -1714161 - MIR SINE MIR -71 191 7 386 214 29 98 chr9 116148773 116148990 -1713637 - LTR16A LTR ERVL -65 392 179 1922 151 26 0 chr9 116149569 116149873 -1712754 - AluSx SINE Alu 0 312 1 1939 191 46 0 chr9 116150993 116151343 -1711284 - MER47A DNA MER2_type 0 366 1 1035 248 151 25 chr9 116151483 116151926 -1710701 + MLT1D LTR MaLR 1 499 -6 437 244 62 11 chr9 116151975 116152127 -1710500 + MIR3 SINE MIR 37 191 -43 387 339 8 0 chr9 116153109 116153239 -1709388 - MIR SINE MIR -46 216 86 192 298 0 0 chr9 116153395 116153442 -1709185 + L2 LINE L2 3267 3313 0 474 224 11 7 chr9 116153442 116153719 -1708908 + (TGGA)n Simple_repeat Simple_repeat 1 278 0 357 255 160 0 chr9 116154524 116154630 -1707997 - MIR SINE MIR -27 235 113 211 214 18 18 chr9 116155146 116155202 -1707425 - L2 LINE L2 -4 3268 3213 2347 83 3 3 chr9 116157304 116157616 -1705011 - AluSx SINE Alu 0 312 1 751 308 44 4 chr9 116157943 116158170 -1704457 - MIR SINE MIR -23 239 4 2089 112 0 7 chr9 116158252 116158548 -1704079 + AluSq SINE Alu 1 294 -19 243 276 40 0 chr9 116158645 116158721 -1703906 + L2 LINE L2 2921 2999 -314 266 253 67 0 chr9 116158854 116158929 -1703698 + L2 LINE L2 3151 3230 -42 330 257 76 49 chr9 116160905 116161049 -1701578 - MLT2C1 LTR ERVL 0 397 250 2286 84 6 3 chr9 116161759 116162070 -1700557 + AluSx SINE Alu 1 312 0 1770 160 0 31 chr9 116162979 116163298 -1699329 + AluJo SINE Alu 1 309 -3 379 320 22 18 chr9 116164031 116164372 -1698255 - L1M LINE L1 -745 5417 5075 298 284 109 45 chr9 116164766 116164967 -1697660 - MLT1L LTR MaLR -212 403 190 480 264 21 28 chr9 116165246 116165400 -1697227 - MIR SINE MIR -65 143 10 1453 203 20 17 chr9 116166647 116166996 -1695631 + MLT1B LTR MaLR 35 384 -6 181 336 48 29 chr9 116167197 116167301 -1695326 + MIR SINE MIR 157 262 0 435 202 136 56 chr9 116167837 116168050 -1694577 - MER33 DNA MER1_type -58 266 37 1617 151 61 7 chr9 116168097 116168257 -1694370 - AluJb SINE Alu -19 293 110 392 0 0 20 chr9 116168257 116168306 -1694321 + (TTTA)n Simple_repeat Simple_repeat 3 50 0 1617 151 61 7 chr9 116168306 116168423 -1694204 - AluJb SINE Alu -202 110 1 2276 93 0 0 chr9 116168432 116168732 -1693895 - AluSx SINE Alu -12 300 1 2048 57 0 19 chr9 116168754 116169018 -1693609 + L1PA4 LINE L1 5894 6152 -3 775 256 80 55 chr9 116169467 116169830 -1692797 - MLT1A2 LTR MaLR -2 372 1 1388 263 98 5 chr9 116170532 116170981 -1691646 + L1MB5 LINE L1 5649 6139 -35 258 276 13 0 chr9 116170975 116171051 -1691576 + L1MA10 LINE L1 6258 6334 0 * 233 146 0 0 chr9 116171047 116171088 -1691539 + L1MB5 LINE L1 6128 6168 -6 * 2190 103 0 3 chr9 116171266 116171568 -1691059 + AluSx SINE Alu 1 301 -11 236 108 0 0 chr9 116171570 116171607 -1691020 + Alu SINE Alu 85 121 -12 510 283 94 36 chr9 116171963 116172435 -1690192 + MLT1G LTR MaLR 37 543 -6 210 258 0 0 chr9 116172736 116172798 -1689829 + (CA)n Simple_repeat Simple_repeat 2 63 0 261 79 0 0 chr9 116172894 116172922 -1689705 + (TC)n Simple_repeat Simple_repeat 1 31 -7 1344 215 63 68 chr9 116172922 116173289 -1689338 + MLT1A1 LTR MaLR 1 365 0 261 79 0 0 chr9 116173289 116173298 -1689329 + (TC)n Simple_repeat Simple_repeat 30 38 0 275 111 19 0 chr9 116174068 116174122 -1688505 + MER31A LTR ERV1 431 485 0 2187 114 0 13 chr9 116175153 116175469 -1687158 + AluSx SINE Alu 1 312 0 256 308 22 0 chr9 116175958 116176049 -1686578 + (CA)n Simple_repeat Simple_repeat 1 93 0 2347 74 0 7 chr9 116176220 116176529 -1686098 - AluSc SINE Alu -2 307 1 273 152 0 0 chr9 116176899 116176945 -1685682 - L2 LINE L2 -4 3309 3264 507 229 86 43 chr9 116177187 116177265 -1685362 - MER20 DNA MER1_type 0 219 146 4143 120 8 26 chr9 116177265 116177363 -1685264 + MER41B LTR ERV1 2 100 -535 2179 72 41 0 chr9 116177363 116177528 -1685099 - AluY SINE Alu -9 302 118 333 0 0 0 chr9 116177528 116177565 -1685062 + (TG)n Simple_repeat Simple_repeat 2 38 0 2179 72 41 0 chr9 116177565 116177689 -1684938 - AluY SINE Alu -193 118 1 4143 120 8 26 chr9 116177689 116178111 -1684516 + MER41B LTR ERV1 100 510 -125 2142 98 26 10 chr9 116178111 116178418 -1684209 - AluSx SINE Alu 0 312 1 4143 120 8 26 chr9 116178418 116178539 -1684088 + MER41B LTR ERV1 510 632 -3 507 229 86 43 chr9 116178539 116178670 -1683957 - MER20 DNA MER1_type -73 146 1 2053 119 0 13 chr9 116179469 116179772 -1682855 + AluSx SINE Alu 1 299 -13 2716 154 50 69 chr9 116179802 116180457 -1682170 + LTR8A LTR ERV1 85 727 0 977 173 40 121 chr9 116180533 116180581 -1682046 - L1MA9 LINE L1 -4 6308 6258 2217 113 0 0 chr9 116180581 116180882 -1681745 + AluSx SINE Alu 1 301 -11 977 173 40 121 chr9 116180882 116181062 -1681565 - L1MA9 LINE L1 -54 6258 6115 2789 119 125 84 chr9 116181062 116181446 -1681181 + MER4B LTR ERV1 1 419 -191 2331 60 13 0 chr9 116181446 116181744 -1680883 - AluSx SINE Alu -10 302 1 2789 119 125 84 chr9 116181744 116181945 -1680682 + MER4B LTR ERV1 419 610 0 977 173 40 121 chr9 116181945 116182061 -1680566 - L1MA9 LINE L1 -197 6115 5991 183 42 0 0 chr9 116182163 116182187 -1680440 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 2175 113 0 0 chr9 116182191 116182482 -1680145 + AluSp SINE Alu 1 291 -22 189 0 0 0 chr9 116182509 116182530 -1680097 + (A)n Simple_repeat Simple_repeat 1 21 0 2857 108 2 0 chr9 116182675 116183110 -1679517 + MER41B LTR ERV1 1 436 -199 1478 75 0 66 chr9 116183122 116183334 -1679293 - AluY SINE Alu -113 198 1 1014 167 0 32 chr9 116183349 116183535 -1679092 + AluSg/x SINE Alu 122 301 -11 715 294 153 89 chr9 116183543 116183991 -1678636 + HAL1b LINE L1 285 703 -905 1843 102 0 0 chr9 116183991 116184236 -1678391 - AluSx SINE Alu -67 245 1 715 294 153 89 chr9 116184236 116184726 -1677901 + HAL1b LINE L1 703 1201 -407 356 326 120 43 chr9 116184719 116184783 -1677844 + HAL1b LINE L1 1025 1083 -525 * 2359 87 3 0 chr9 116184783 116185093 -1677534 + AluY SINE Alu 1 311 0 356 326 120 43 chr9 116185093 116185212 -1677415 + HAL1b LINE L1 1083 1222 -386 836 209 75 26 chr9 116185383 116185766 -1676861 + L1MA9 LINE L1 5814 6311 -1 476 295 47 34 chr9 116186119 116186599 -1676028 + L1ME1 LINE L1 1104 1595 -4801 2038 141 3 0 chr9 116186599 116186898 -1675729 + AluSq SINE Alu 1 300 -13 543 242 56 0 chr9 116186943 116187141 -1675486 + L1ME1 LINE L1 2286 2494 -3721 2075 136 3 0 chr9 116187141 116187443 -1675184 + AluSx SINE Alu 1 303 -9 315 167 0 69 chr9 116187444 116187516 -1675111 + L1MB7 LINE L1 6108 6174 -10 2353 103 0 3 chr9 116187687 116187998 -1674629 + AluSg SINE Alu 1 310 0 336 327 84 0 chr9 116188082 116188189 -1674438 + L1ME1 LINE L1 3833 3948 -2267 576 263 150 47 chr9 116188213 116188518 -1674109 + L1ME1 LINE L1 3901 4236 -1979 2162 224 47 34 chr9 116188530 116188559 -1674068 + L1ME1 LINE L1 5111 5138 -1097 2093 99 34 81 chr9 116188559 116188617 -1674010 - THE1B LTR MaLR 0 364 305 2296 90 21 0 chr9 116188617 116188907 -1673720 - AluSp SINE Alu -17 296 1 2093 99 34 81 chr9 116188907 116189230 -1673397 - THE1B LTR MaLR -59 305 1 2162 224 47 34 chr9 116189230 116189529 -1673098 + L1ME1 LINE L1 5138 5431 -804 2384 74 0 32 chr9 116189529 116189841 -1672786 + AluY SINE Alu 1 302 -9 2162 224 47 34 chr9 116189841 116190365 -1672262 + L1ME1 LINE L1 5431 5972 -263 514 333 58 23 chr9 116190447 116190571 -1672056 + L1MEc LINE L1 4876 4994 -1221 2283 94 10 3 chr9 116190571 116190869 -1671758 - AluSq SINE Alu -13 300 1 514 333 58 23 chr9 116190869 116191092 -1671535 + L1MEc LINE L1 4994 5235 -980 2433 87 3 0 chr9 116191128 116191428 -1671199 + AluY SINE Alu 1 301 -10 1563 178 8 72 chr9 116191435 116191835 -1670792 + L1MB3 LINE L1 3850 4223 -1923 1288 137 5 0 chr9 116191843 116192033 -1670594 + AluSg/x SINE Alu 119 309 -1 4479 200 25 20 chr9 116192059 116193080 -1669547 + L1MB3 LINE L1 4273 5312 -868 2201 104 3 10 chr9 116193080 116193377 -1669250 + AluSx SINE Alu 12 306 -6 4479 200 25 20 chr9 116193377 116193515 -1669112 + L1MB3 LINE L1 5312 5448 -732 858 229 0 21 chr9 116193515 116193703 -1668924 - LTR2 LTR ERV1 0 449 266 263 273 30 83 chr9 116193763 116193895 -1668732 - LTR2 LTR ERV1 -324 125 1 372 203 0 0 chr9 116193895 116193969 -1668658 - Harlequin LTR ERV1 -1 6895 6822 361 197 0 0 chr9 116193965 116194026 -1668601 - Harlequin LTR ERV1 -1369 5527 5467 * 574 189 19 0 chr9 116194013 116194119 -1668508 - HERVE LTR ERV1 -1791 6022 5915 13820 76 5 17 chr9 116194147 116196018 -1666609 - HERVE LTR ERV1 -1991 5822 3973 3856 73 7 13 chr9 116196018 116196566 -1666061 + LTR6B LTR ERV1 1 545 -13 347 107 54 0 chr9 116196551 116196607 -1666020 + LTR6A LTR ERV1 506 564 0 * 29600 78 7 3 chr9 116196607 116200571 -1662056 - HERVE LTR ERV1 -3837 3976 1 786 189 49 32 chr9 116200571 116200756 -1661871 - LTR2B LTR ERV1 0 490 303 287 258 23 76 chr9 116200791 116200923 -1661704 - LTR2 LTR ERV1 -324 125 1 3298 187 31 37 chr9 116200923 116201003 -1661624 + L1MB3 LINE L1 5445 5524 -659 1778 144 60 7 chr9 116201003 116201288 -1661339 + AluJo SINE Alu 1 300 -12 3298 187 31 37 chr9 116201288 116201592 -1661035 + L1MB3 LINE L1 5524 5828 -355 2508 64 7 0 chr9 116201592 116201889 -1660738 + AluY SINE Alu 1 299 -12 3298 187 31 37 chr9 116201889 116202237 -1660390 + L1MB3 LINE L1 5828 6174 -9 2253 120 0 0 chr9 116202237 116202537 -1660090 - AluSx SINE Alu -12 300 1 272 304 0 61 chr9 116202570 116202784 -1659843 + L1M4 LINE L1 5157 5357 -789 249 356 0 16 chr9 116202805 116202972 -1659655 + G-rich Low_complexity Low_complexity 1 164 0 440 342 6 8 chr9 116203002 116203228 -1659399 + G-rich Low_complexity Low_complexity 1 225 0 417 264 6 52 chr9 116203261 116203435 -1659192 + G-rich Low_complexity Low_complexity 3 168 0 2464 90 3 0 chr9 116203670 116203981 -1658646 - AluSx SINE Alu 0 312 1 272 304 0 61 chr9 116204014 116204228 -1658399 + L1ME LINE L1 5157 5357 -789 1368 144 22 22 chr9 116205023 116205153 -1657474 + AluJo SINE Alu 3 135 -177 2400 100 3 0 chr9 116205153 116205453 -1657174 + AluSp SINE Alu 1 301 -12 1368 144 22 22 chr9 116205453 116205551 -1657076 + AluJo SINE Alu 134 231 -81 198 0 0 0 chr9 116206241 116206263 -1656364 + (TTTTTA)n Simple_repeat Simple_repeat 2 23 0 608 142 0 0 chr9 116206275 116206381 -1656246 - AluSg/x SINE Alu 0 309 204 1817 128 44 54 chr9 116206422 116206719 -1655908 - AluSx SINE Alu -18 294 1 2193 99 3 7 chr9 116206885 116207179 -1655448 + AluSg SINE Alu 1 293 -17 2178 129 30 0 chr9 116207992 116208295 -1654332 - AluSx SINE Alu 0 312 1 1192 203 0 18 chr9 116208696 116208923 -1653704 + AluSx SINE Alu 62 284 -28 1400 113 5 0 chr9 116209006 116209192 -1653435 + AluY SINE Alu 116 302 -9 2408 81 0 0 chr9 116209600 116209883 -1652744 - AluSg SINE Alu -27 283 1 228 35 0 0 chr9 116210005 116210034 -1652593 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1045 252 28 88 chr9 116210047 116210444 -1652183 + L1ME LINE L1 5354 5726 -436 1288 134 223 9 chr9 116210635 116210859 -1651768 + AluSg1 SINE Alu 23 294 -15 353 254 24 16 chr9 116210887 116211013 -1651614 - LTR16C LTR ERVL -1 490 364 2417 82 0 3 chr9 116211027 116211320 -1651307 - AluY SINE Alu -19 292 1 290 256 22 11 chr9 116212153 116212243 -1650384 - MLT1H-int LTR MaLR -1276 95 5 784 211 130 29 chr9 116212247 116212493 -1650134 - MLT1H LTR MaLR 0 549 279 305 207 23 23 chr9 116213229 116213316 -1649311 + LTR33 LTR ERVL 90 176 -345 394 341 8 8 chr9 116213757 116213886 -1648741 + G-rich Low_complexity Low_complexity 4 132 0 2403 89 0 13 chr9 116215445 116215759 -1646868 - AluY SINE Alu -1 310 1 4987 95 3 26 chr9 116215765 116216451 -1646176 - L1PA13 LINE L1 -3 6160 5492 2152 110 38 0 chr9 116216451 116216741 -1645886 - AluSx SINE Alu -11 301 1 4987 95 3 26 chr9 116216741 116216819 -1645808 - L1PA13 LINE L1 -671 5492 5414 354 138 0 0 chr9 116216819 116216877 -1645750 + (TTCC)n Simple_repeat Simple_repeat 4 61 0 2330 113 3 0 chr9 116216878 116217189 -1645438 - AluSp SINE Alu -1 312 1 460 127 0 0 chr9 116217189 116217260 -1645367 - L1PA13 LINE L1 -734 5427 5357 180 0 0 0 chr9 116217265 116217285 -1645342 + (TATG)n Simple_repeat Simple_repeat 4 23 0 353 155 0 0 chr9 116217316 116217374 -1645253 - L1PA13 LINE L1 -1258 4888 4831 2115 268 39 25 chr9 116218013 116218738 -1643889 - L1ME1 LINE L1 -6 6160 5426 987 177 46 39 chr9 116218793 116218914 -1643713 + L1MC4 LINE L1 6974 7093 -949 2415 83 3 0 chr9 116218914 116219204 -1643423 + AluSp SINE Alu 1 291 -22 987 177 46 39 chr9 116219204 116219342 -1643285 + L1MC4 LINE L1 7093 7235 -807 433 237 34 13 chr9 116219342 116219495 -1643132 + L1MC4 LINE L1 7885 7994 -1 239 262 48 19 chr9 116219988 116220091 -1642536 - MIR3 SINE MIR -26 182 77 1013 161 40 36 chr9 116220166 116220415 -1642212 - L1MB8 LINE L1 -5 6173 5924 23 0 0 0 chr9 116220477 116220500 -1642127 + AT_rich Low_complexity Low_complexity 1 23 0 312 233 97 97 chr9 116221396 116221456 -1641171 + HAL1 LINE L1 1592 1651 -856 2205 172 110 21 chr9 116221456 116221967 -1640660 + LTR38 LTR ERV1 1 556 0 312 233 97 97 chr9 116221967 116222028 -1640599 + HAL1 LINE L1 1651 1716 -791 1879 118 0 0 chr9 116222028 116222273 -1640354 + AluSx SINE Alu 1 245 -67 312 233 97 97 chr9 116222273 116222326 -1640301 + HAL1 LINE L1 1715 1767 -740 2543 79 0 0 chr9 116223679 116223984 -1638643 - AluSc SINE Alu -4 305 1 2109 141 3 0 chr9 116223984 116224282 -1638345 - AluJo SINE Alu -13 299 1 227 320 50 30 chr9 116224527 116224727 -1637900 - L1MC5 LINE L1 -431 7530 7327 2443 63 0 13 chr9 116224767 116225070 -1637557 - AluY SINE Alu -12 299 1 550 197 165 94 chr9 116225138 116225198 -1637429 - L1MC5 LINE L1 -751 7210 7156 1647 116 116 0 chr9 116225198 116225439 -1637188 - AluSg SINE Alu -3 307 39 550 197 165 94 chr9 116225439 116225687 -1636940 - L1MC5 LINE L1 -805 7156 6880 4229 107 21 51 chr9 116226037 116226749 -1635878 + LTR8 LTR ERV1 1 691 0 1216 172 15 135 chr9 116226995 116227193 -1635434 + MER4A LTR ERV1 2 60 -604 2276 72 11 0 chr9 116227193 116227470 -1635157 - AluSq SINE Alu -13 300 21 1216 172 15 135 chr9 116227470 116227796 -1634831 + MER4A LTR ERV1 60 423 -241 261 284 21 11 chr9 116227809 116227904 -1634723 + MER4C LTR ERV1 276 371 -94 367 193 24 24 chr9 116227972 116228055 -1634572 + MER4C LTR ERV1 383 465 0 2217 86 28 0 chr9 116228430 116228721 -1633906 + AluSx SINE Alu 1 299 -13 2225 103 3 0 chr9 116228767 116229059 -1633568 + AluSg SINE Alu 1 293 -17 1672 175 3 21 chr9 116230663 116230949 -1631678 - AluJo SINE Alu -31 281 1 349 278 56 33 chr9 116231630 116231810 -1630817 + LTR16A LTR ERVL 161 344 -106 2004 92 0 79 chr9 116232676 116233006 -1629621 - AluSq SINE Alu 0 322 16 1430 106 4 71 chr9 116233643 116233869 -1628758 - AluSx SINE Alu -101 211 1 24 0 0 0 chr9 116234429 116234453 -1628174 + AT_rich Low_complexity Low_complexity 1 24 0 2038 123 10 16 chr9 116234766 116235075 -1627552 + AluJb SINE Alu 1 307 -5 2199 106 0 7 chr9 116235201 116235494 -1627133 - AluSx SINE Alu -21 291 1 514 280 115 40 chr9 116235560 116235974 -1626653 + L1ME LINE L1 5271 5715 -406 51 65 0 0 chr9 116236983 116237076 -1625551 + GC_rich Low_complexity Low_complexity 1 93 0 24 32 0 0 chr9 116237185 116237216 -1625411 + GC_rich Low_complexity Low_complexity 1 31 0 201 200 0 40 chr9 116237235 116237310 -1625317 + (CGGGG)n Simple_repeat Simple_repeat 4 75 0 30 93 0 0 chr9 116237315 116237401 -1625226 + GC_rich Low_complexity Low_complexity 1 86 0 309 225 22 51 chr9 116237405 116237583 -1625044 + G-rich Low_complexity Low_complexity 3 175 0 21 0 0 0 chr9 116237737 116237758 -1624869 + GC_rich Low_complexity Low_complexity 1 21 0 2206 129 3 0 chr9 116238665 116238976 -1623651 - AluSx SINE Alu 0 312 1 2435 90 0 0 chr9 116239055 116239354 -1623273 - AluSx SINE Alu -13 299 1 2285 109 3 6 chr9 116240413 116240726 -1621901 - AluSx SINE Alu 0 312 1 333 299 57 22 chr9 116241634 116241786 -1620841 - MIR SINE MIR -64 144 37 2309 96 0 0 chr9 116246396 116246699 -1615928 + AluSq SINE Alu 1 303 -10 2068 116 7 3 chr9 116247453 116247756 -1614871 - AluSx SINE Alu -8 304 1 2167 123 10 0 chr9 116249704 116250012 -1612615 - AluSx SINE Alu -1 311 1 189 0 0 0 chr9 116250106 116250127 -1612500 + (T)n Simple_repeat Simple_repeat 1 21 0 2213 98 0 22 chr9 116251117 116251435 -1611192 - AluSx SINE Alu -1 311 1 276 213 53 0 chr9 116251874 116251949 -1610678 + L1ME4a LINE L1 6043 6121 0 21 57 0 0 chr9 116252085 116252120 -1610507 + AT_rich Low_complexity Low_complexity 1 35 0 386 338 38 0 chr9 116253305 116253438 -1609189 + MIR SINE MIR 14 151 -111 2128 85 0 7 chr9 116253468 116253750 -1608877 + AluSq SINE Alu 1 280 -33 709 200 61 11 chr9 116253979 116254159 -1608468 - L1MC2 LINE L1 -19 6325 6137 294 214 14 0 chr9 116254150 116254220 -1608407 - L1MC1 LINE L1 -225 6108 6038 * 2294 83 3 3 chr9 116254230 116254532 -1608095 - AluSq SINE Alu -11 302 1 1801 160 6 16 chr9 116254826 116255160 -1607467 - AluJb SINE Alu 0 312 1 302 324 49 0 chr9 116256600 116256702 -1605925 + MIR SINE MIR 87 193 -69 213 376 170 0 chr9 116259744 116260143 -1602484 - L2 LINE L2 -584 2730 2264 214 319 128 46 chr9 116260147 116260429 -1602198 - L2 LINE L2 -1224 2090 1786 266 385 50 0 chr9 116265087 116265248 -1597379 + MIR SINE MIR 59 227 -35 226 233 46 73 chr9 116265689 116265791 -1596836 - MIR SINE MIR -66 142 44 613 280 24 95 chr9 116266235 116266571 -1596056 + L1MB7 LINE L1 564 875 -5667 773 210 85 41 chr9 116266615 116266981 -1595646 + L1MB7 LINE L1 1202 1583 -4959 * 1056 222 18 72 chr9 116266971 116267293 -1595334 + L1MB7 LINE L1 2519 2815 -3829 2150 119 0 13 chr9 116267293 116267603 -1595024 - AluSx SINE Alu -6 306 1 1056 222 18 72 chr9 116267603 116267765 -1594862 + L1MB7 LINE L1 2815 2984 -3660 224 214 14 29 chr9 116267790 116267860 -1594767 + A-rich Low_complexity Low_complexity 2 70 0 2981 220 69 50 chr9 116267861 116269523 -1593104 + L1MB7 LINE L1 4655 6373 -309 2165 104 3 13 chr9 116269523 116269830 -1592797 + AluSx SINE Alu 1 304 -8 2981 220 69 50 chr9 116269830 116270134 -1592493 + L1MB7 LINE L1 6373 6670 -12 216 0 0 0 chr9 116270359 116270383 -1592244 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 180 387 21 0 chr9 116272056 116272149 -1590478 + MIR SINE MIR 81 175 -87 705 265 110 14 chr9 116274537 116274892 -1587735 - MER69 DNA AcHobo 0 2526 2138 230 345 86 5 chr9 116274899 116275096 -1587531 - MER69 DNA AcHobo -1697 829 617 504 368 77 61 chr9 116275329 116276050 -1586577 - L1MEd LINE L1 -3228 3416 2694 1962 134 43 0 chr9 116276350 116276649 -1585978 - AluSx SINE Alu 0 312 1 295 340 72 31 chr9 116276663 116277110 -1585517 - HAL1 LINE L1 -860 1647 1183 623 226 0 6 chr9 116277129 116277310 -1585317 + (TG)n Simple_repeat Simple_repeat 1 180 0 709 309 74 68 chr9 116277318 116277875 -1584752 - L1MEd LINE L1 -5015 1600 967 1136 214 91 18 chr9 116284586 116284983 -1577644 - MER74C LTR ERVL -3 457 32 1456 127 5 0 chr9 116284995 116285215 -1577412 + AluJo SINE Alu 1 221 -91 783 336 80 35 chr9 116285842 116286057 -1576570 - L1MEc LINE L1 -4451 1810 1606 559 92 0 0 chr9 116286057 116286133 -1576494 - MADE1 DNA Mariner 0 80 5 783 336 80 35 chr9 116286133 116286258 -1576369 - L1MEc LINE L1 -4655 1606 1488 1975 116 25 0 chr9 116286258 116286598 -1576029 + AluSx SINE Alu 1 347 0 783 336 80 35 chr9 116286598 116286967 -1575660 - L1MEc LINE L1 -4773 1488 1067 610 193 0 28 chr9 116286968 116287077 -1575550 - FRAM SINE Alu -9 167 62 557 326 64 5 chr9 116287080 116287267 -1575360 - L1MEc LINE L1 -5054 1016 819 1540 249 67 49 chr9 116287290 116287424 -1575203 - L1MEc LINE L1 -5386 684 554 2092 129 0 0 chr9 116287424 116287733 -1574894 - AluSq SINE Alu -4 309 1 1540 249 67 49 chr9 116287733 116288268 -1574359 - L1MEc LINE L1 -5516 554 3 364 310 27 27 chr9 116290609 116290796 -1571831 - ERVL LTR ERVL -705 5059 4873 320 197 86 92 chr9 116290821 116290973 -1571654 + L1M4 LINE L1 3005 3155 -2991 536 276 55 12 chr9 116291038 116291201 -1571426 + LTR41 LTR ERVL 1 170 -603 319 295 36 30 chr9 116291408 116291574 -1571053 + LTR41 LTR ERVL 584 750 -23 1513 241 13 58 chr9 116291585 116292037 -1570590 + MER74A LTR ERVL 1 432 -126 2366 194 90 28 chr9 116292316 116292636 -1569991 - MER67B LTR ERV1 -9 652 353 2122 122 0 25 chr9 116292636 116292956 -1569671 - AluSx SINE Alu 0 312 1 2366 194 90 28 chr9 116292956 116293249 -1569378 - MER67B LTR ERV1 -308 353 1 1765 162 45 38 chr9 116294328 116294724 -1567903 - MLT1D LTR MaLR -106 399 1 400 167 15 0 chr9 116294727 116294793 -1567834 - MLT1D LTR MaLR -438 67 1 326 222 16 0 chr9 116294796 116294859 -1567768 - MLT1D LTR MaLR -438 67 4 4307 185 37 16 chr9 116295017 116296104 -1566523 - L1MB7 LINE L1 0 6184 5069 2078 123 3 0 chr9 116296104 116296404 -1566223 + AluSx SINE Alu 1 301 -11 4307 185 37 16 chr9 116296404 116296587 -1566040 - L1MB7 LINE L1 -1115 5069 4891 457 331 51 24 chr9 116296644 116297019 -1565608 - L1MEc LINE L1 -5895 501 117 726 311 86 12 chr9 116297104 116297626 -1565001 + L2 LINE L2 2606 3158 -155 422 277 15 8 chr9 116298191 116298321 -1564306 - LTR41 LTR ERVL -641 132 2 298 297 36 43 chr9 116298325 116298463 -1564164 + L2 LINE L2 3158 3294 -19 399 240 20 0 chr9 116298661 116298761 -1563866 - L1MD2 LINE L1 -2 6357 6256 * 2627 245 59 80 chr9 116298752 116299123 -1563504 - L1MD1 LINE L1 -252 6059 5682 264 59 0 0 chr9 116299123 116299157 -1563470 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2627 245 59 80 chr9 116299157 116299950 -1562677 - L1MD1 LINE L1 -629 5682 4874 1081 130 6 0 chr9 116299950 116300119 -1562508 + AluSg/x SINE Alu 133 302 -8 2627 245 59 80 chr9 116300119 116300792 -1561835 - L1MD1 LINE L1 -1437 4874 4130 3931 86 29 9 chr9 116300792 116301337 -1561290 + LTR38 LTR ERV1 1 556 0 2627 245 59 80 chr9 116301337 116301482 -1561145 - L1MD1 LINE L1 -2181 4130 3984 2751 10 0 6 chr9 116301882 116302195 -1560432 + AluYa5 SINE Alu 1 311 0 214 246 0 55 chr9 116306427 116306610 -1556017 + (CTGGGG)n Simple_repeat Simple_repeat 5 177 0 409 230 11 56 chr9 116310327 116310505 -1552122 + C-rich Low_complexity Low_complexity 2 171 0 305 309 83 33 chr9 116310946 116311127 -1551500 - MIR SINE MIR -29 233 44 347 317 138 20 chr9 116311304 116311550 -1551077 - L1MD1 LINE L1 -4988 1230 956 2060 220 113 26 chr9 116311558 116311908 -1550719 - L1MB5 LINE L1 -8 6166 5745 2152 112 0 10 chr9 116311908 116312211 -1550416 - AluSx SINE Alu -12 300 1 2060 220 113 26 chr9 116312211 116312433 -1550194 - L1MB5 LINE L1 -429 5745 5544 694 246 27 39 chr9 116312433 116312693 -1549934 - L1MD1 LINE L1 -5375 1021 765 630 243 217 7 chr9 116312720 116313115 -1549512 + MLT1F1 LTR MaLR 56 535 -7 375 290 90 15 chr9 116313123 116313323 -1549304 - L1MD1 LINE L1 -5635 761 547 439 275 93 5 chr9 116313539 116313732 -1548895 - L1MD1 LINE L1 -6179 217 8 2001 241 129 28 chr9 116313734 116313904 -1548723 - L1MD2 LINE L1 -17 6342 6191 306 0 0 0 chr9 116313904 116313938 -1548689 + (TG)n Simple_repeat Simple_repeat 1 34 0 2001 241 129 28 chr9 116313938 116314093 -1548534 - L1MD2 LINE L1 -168 6191 6053 2427 58 0 6 chr9 116314093 116314406 -1548221 - AluY SINE Alu 0 311 1 2001 241 129 28 chr9 116314406 116314754 -1547873 - L1MD2 LINE L1 -306 6053 5600 1512 114 0 5 chr9 116314754 116314974 -1547653 - AluSg/x SINE Alu -2 308 90 320 278 46 5 chr9 116315081 116315203 -1547424 - L1MD2 LINE L1 -829 5530 5425 1519 224 34 41 chr9 116315237 116315536 -1547091 - L1MB5 LINE L1 -743 5403 5201 2176 112 3 3 chr9 116315536 116315848 -1546779 - AluSx SINE Alu 0 312 1 1519 224 34 41 chr9 116315848 116316157 -1546470 - L1MB5 LINE L1 -945 5201 4891 1129 95 0 35 chr9 116316500 116316669 -1545958 - AluSg/x SINE Alu 0 312 150 748 253 35 0 chr9 116316946 116317116 -1545511 + MER41D LTR ERV1 382 557 0 1144 288 70 88 chr9 116317116 116317391 -1545236 - L1MB5 LINE L1 -1253 4893 4615 1931 140 0 0 chr9 116317391 116317676 -1544951 + AluSx SINE Alu 5 289 -23 1144 288 70 88 chr9 116317676 116318229 -1544398 - L1MB5 LINE L1 -1531 4615 4080 510 274 0 0 chr9 116320373 116320552 -1542075 + (TAGG)n Simple_repeat Simple_repeat 2 180 0 471 294 0 0 chr9 116320528 116320708 -1541919 + (TGGG)n Simple_repeat Simple_repeat 1 180 0 * 22 0 0 0 chr9 116320878 116320900 -1541727 + AT_rich Low_complexity Low_complexity 1 22 0 2157 101 3 22 chr9 116321647 116321965 -1540662 - AluSx SINE Alu 0 312 1 2070 107 0 0 chr9 116323327 116323607 -1539020 - AluSc SINE Alu -7 302 23 343 305 85 37 chr9 116324174 116324338 -1538289 + L1M4 LINE L1 2995 3166 -2980 2028 109 0 16 chr9 116324898 116325223 -1537404 + AluSx SINE Alu 3 322 0 370 332 75 16 chr9 116325575 116325762 -1536865 + L1MC4a LINE L1 5826 6023 -1785 234 261 59 26 chr9 116325785 116325938 -1536689 + L1MC4a LINE L1 6074 6231 -1577 1757 254 43 49 chr9 116326680 116327421 -1535206 - L1MB5 LINE L1 -2482 3664 2928 789 185 8 0 chr9 116327421 116327551 -1535076 - FLAM_C SINE Alu -11 132 2 351 225 90 22 chr9 116327552 116327641 -1534986 - L1MB5 LINE L1 -3187 2959 2865 933 172 185 53 chr9 116327641 116327943 -1534684 + MER4A LTR ERV1 1 342 -322 496 158 242 8 chr9 116328009 116328129 -1534498 + MER4C LTR ERV1 300 447 -18 865 289 138 0 chr9 116328148 116328553 -1534074 - L1MB5 LINE L1 -3278 2868 2408 349 280 64 0 chr9 116328596 116328721 -1533906 - L1M LINE L1 -2422 5386 5254 1612 163 71 39 chr9 116328757 116329095 -1533532 - LTR10A LTR ERV1 -63 546 198 439 135 21 0 chr9 116329208 116329304 -1533323 + (TGGA)n Simple_repeat Simple_repeat 3 100 0 209 146 21 0 chr9 116329417 116329465 -1533162 + (TCCA)n Simple_repeat Simple_repeat 3 51 0 794 153 23 6 chr9 116329513 116329690 -1532937 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 4106 115 42 9 chr9 116329693 116330329 -1532298 - MER51D LTR ERV1 0 657 1 992 140 0 6 chr9 116330341 116330519 -1532108 + (TCCA)n Simple_repeat Simple_repeat 2 178 0 457 195 0 16 chr9 116330535 116330663 -1531964 + (TCCA)n Simple_repeat Simple_repeat 1 126 0 2287 93 0 0 chr9 116330742 116331084 -1531543 - AluY SINE Alu 0 342 1 1816 91 107 0 chr9 116332743 116333006 -1529621 + AluSq SINE Alu 1 291 -22 273 128 0 0 chr9 116334009 116334056 -1528571 + (TC)n Simple_repeat Simple_repeat 2 48 0 1605 174 0 24 chr9 116334057 116334355 -1528272 - AluJo SINE Alu -21 291 1 503 179 9 0 chr9 116335159 116335265 -1527362 + (TCCA)n Simple_repeat Simple_repeat 1 107 0 725 193 0 6 chr9 116335293 116335474 -1527153 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 422 211 10 0 chr9 116335501 116335605 -1527022 + (TCCA)n Simple_repeat Simple_repeat 3 107 0 692 199 0 6 chr9 116335639 116335820 -1526807 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 410 211 10 0 chr9 116335847 116335951 -1526676 + (TCCA)n Simple_repeat Simple_repeat 3 107 0 692 217 31 8 chr9 116335985 116336649 -1525978 + (TCCA)n Simple_repeat Simple_repeat 1 679 0 207 167 0 0 chr9 116336716 116336758 -1525869 + (TCCA)n Simple_repeat Simple_repeat 3 44 0 388 234 30 0 chr9 116336783 116336950 -1525677 + (TCCA)n Simple_repeat Simple_repeat 1 172 0 195 173 82 0 chr9 116336993 116337103 -1525524 + (TCCA)n Simple_repeat Simple_repeat 4 122 0 301 267 25 58 chr9 116337108 116337228 -1525399 - L2 LINE L2 0 3313 3198 189 330 36 0 chr9 116337561 116337655 -1524972 - MIR SINE MIR -73 135 81 223 289 36 0 chr9 116338328 116338411 -1524216 - L2 LINE L2 -194 3078 2993 2183 139 0 0 chr9 116338677 116339014 -1523613 + MER1A DNA MER1_type 182 518 -11 262 302 0 0 chr9 116339080 116339166 -1523461 + (GAGTG)n Simple_repeat Simple_repeat 3 88 0 3126 156 41 2 chr9 116339523 116340030 -1522597 - MER1A DNA MER1_type 0 527 1 209 168 10 50 chr9 116341541 116341642 -1520985 + (CACCC)n Simple_repeat Simple_repeat 3 99 0 2337 87 0 0 chr9 116342683 116342983 -1519644 + AluY SINE Alu 1 300 -11 436 226 49 43 chr9 116343630 116343794 -1518833 + MLT1D LTR MaLR 269 433 -72 599 195 153 26 chr9 116343831 116344021 -1518606 - MLT1D LTR MaLR -17 488 275 351 0 0 0 chr9 116346617 116346656 -1515971 + (TGAA)n Simple_repeat Simple_repeat 4 42 0 305 191 34 22 chr9 116347588 116347677 -1514950 + (CACCC)n Simple_repeat Simple_repeat 5 94 0 2337 87 0 0 chr9 116348718 116349018 -1513609 + AluY SINE Alu 1 300 -11 456 213 49 43 chr9 116349665 116349829 -1512798 + MLT1D LTR MaLR 269 433 -72 599 195 153 26 chr9 116349866 116350056 -1512571 - MLT1D LTR MaLR -17 488 275 351 0 0 0 chr9 116353751 116353790 -1508837 + (TGAA)n Simple_repeat Simple_repeat 4 42 0 329 52 24 180 chr9 116356342 116356553 -1506074 + (CTGGGG)n Simple_repeat Simple_repeat 1 178 0 309 348 56 19 chr9 116356715 116356876 -1505751 + L1M4 LINE L1 3664 3830 -2316 333 316 32 74 chr9 116357048 116357238 -1505389 + L1M4 LINE L1 3324 3505 -2641 581 322 86 53 chr9 116357329 116357512 -1505115 + L1M4 LINE L1 3649 3847 -2299 2055 130 0 0 chr9 116357512 116357797 -1504830 + AluSx SINE Alu 1 285 -27 581 322 86 53 chr9 116357797 116357914 -1504713 + L1M4 LINE L1 3847 3959 -2187 372 318 18 68 chr9 116357925 116358145 -1504482 - MLT1I LTR MaLR -1 408 200 516 286 22 31 chr9 116358257 116358481 -1504146 + L1M4 LINE L1 3967 4188 -1958 2512 265 4 26 chr9 116358491 116359329 -1503298 + L1ME1 LINE L1 3248 4066 -2080 838 220 35 18 chr9 116359329 116359556 -1503071 - MLT1A2 LTR MaLR 0 374 144 1823 143 9 38 chr9 116359556 116359899 -1502728 + MER72 LTR ERV1 1 333 -389 1489 147 39 0 chr9 116359906 116360165 -1502462 + MER72 LTR ERV1 454 722 0 540 175 14 21 chr9 116360703 116360846 -1501781 + LTR49-int LTR ERV1 1054 1195 -5136 399 222 0 0 chr9 116360855 116360927 -1501700 + tRNA-Glu-GAG tRNA tRNA 1 72 -3 355 165 0 0 chr9 116360930 116361009 -1501618 + LTR49-int LTR ERV1 1839 1917 -2963 1358 172 19 117 chr9 116361130 116361151 -1501476 + LTR49-int LTR ERV1 1744 1765 -4181 2426 90 19 53 chr9 116361151 116361528 -1501099 + THE1B LTR MaLR 1 364 0 1358 172 19 117 chr9 116361528 116361826 -1500801 + LTR49-int LTR ERV1 1765 2005 -3941 2232 106 3 3 chr9 116361826 116362128 -1500499 + AluSc SINE Alu 1 302 -7 1358 172 19 117 chr9 116362128 116362279 -1500348 + LTR49-int LTR ERV1 2005 2169 -3777 1311 266 18 36 chr9 116362279 116362783 -1499844 + L1ME1 LINE L1 4165 4659 -1487 501 205 0 96 chr9 116362918 116363084 -1499543 - L1M4 LINE L1 -1794 4352 4203 962 239 12 88 chr9 116363089 116363579 -1499048 + L1ME1 LINE L1 4777 5229 -917 717 179 152 0 chr9 116363580 116363731 -1498896 - MLT1A2 LTR MaLR -252 174 1 734 243 155 29 chr9 116363731 116364040 -1498587 + L1ME1 LINE L1 5555 5902 -264 607 198 17 15 chr9 116364066 116364235 -1498392 + L1ME1 LINE L1 5992 6162 -2 1149 274 125 45 chr9 116364243 116364524 -1498103 + L1M4 LINE L1 4432 4689 -1457 2150 121 3 10 chr9 116364524 116364837 -1497790 + AluSx SINE Alu 1 311 -1 1149 274 125 45 chr9 116364837 116365048 -1497579 + L1M4 LINE L1 4689 4882 -1264 2099 133 0 13 chr9 116365048 116365357 -1497270 - AluSx SINE Alu -7 305 1 1149 274 125 45 chr9 116365357 116365637 -1496990 + L1M4 LINE L1 4882 5267 -879 846 124 8 8 chr9 116365716 116365845 -1496782 + FLAM_C SINE Alu 1 129 -14 2118 112 23 0 chr9 116365871 116366000 -1496627 + AluSq SINE Alu 1 126 -187 204 67 0 0 chr9 116366000 116366030 -1496597 + (CAAA)n Simple_repeat Simple_repeat 4 33 0 2118 112 23 0 chr9 116366030 116366204 -1496423 + AluSq SINE Alu 126 311 -2 273 29 0 0 chr9 116366939 116366973 -1495654 + (TTTC)n Simple_repeat Simple_repeat 2 35 0 1683 120 28 4 chr9 116366976 116367226 -1495401 - AluSx SINE Alu -15 297 42 251 140 20 0 chr9 116368349 116368399 -1494228 + GA-rich Low_complexity Low_complexity 2 52 0 612 220 0 0 chr9 116369173 116369291 -1493336 + AluJo SINE Alu 1 118 -184 2141 81 3 52 chr9 116369296 116369606 -1493021 - AluSx SINE Alu -17 295 1 357 345 103 47 chr9 116373364 116373912 -1488715 + L1M4c LINE L1 815 1502 -4882 482 318 6 0 chr9 116375263 116375439 -1487188 + (CA)n Simple_repeat Simple_repeat 1 177 0 338 247 0 6 chr9 116375474 116375648 -1486979 + (CA)n Simple_repeat Simple_repeat 1 173 0 194 275 0 110 chr9 116380649 116380740 -1481887 - L2 LINE L2 -23 3290 3210 245 301 108 30 chr9 116381611 116381776 -1480851 - MIR3 SINE MIR -53 155 4 287 213 139 19 chr9 116381790 116381898 -1480729 - L2 LINE L2 -2 3270 3150 366 312 0 0 chr9 116383250 116383343 -1479284 + C-rich Low_complexity Low_complexity 1 93 0 223 296 0 0 chr9 116383450 116383504 -1479123 + C-rich Low_complexity Low_complexity 3 56 0 360 307 0 0 chr9 116383525 116383790 -1478837 + C-rich Low_complexity Low_complexity 1 265 0 379 347 86 32 chr9 116384024 116384479 -1478148 + L1 LINE L1 4537 5028 -1118 591 188 120 8 chr9 116384688 116384805 -1477822 + AluJo SINE Alu 1 130 -172 921 191 0 54 chr9 116384862 116385066 -1477561 + AluJo SINE Alu 120 312 0 1551 182 40 14 chr9 116385910 116386262 -1476365 - MLT1B LTR MaLR 0 390 30 21 36 0 0 chr9 116386548 116386576 -1476051 + AT_rich Low_complexity Low_complexity 1 28 0 2235 90 0 17 chr9 116386584 116386884 -1475743 - AluSq SINE Alu -18 295 1 2229 92 0 46 chr9 116388142 116388469 -1474158 - AluSx SINE Alu 0 312 1 434 333 93 15 chr9 116389696 116389935 -1472692 - MIR SINE MIR 0 262 8 1575 244 75 18 chr9 116390275 116390837 -1471790 + L1ME LINE L1 3829 4422 -1724 5183 194 48 48 chr9 116390841 116392573 -1470054 - L1MB7 LINE L1 -159 6025 4295 365 127 0 16 chr9 116392573 116392636 -1469991 + AluJo SINE Alu 76 137 -165 5183 194 48 48 chr9 116392636 116393509 -1469118 - L1MB7 LINE L1 -1889 4295 2140 2435 80 3 3 chr9 116393548 116393849 -1468778 + AluY SINE Alu 1 301 -10 426 327 134 59 chr9 116393850 116393902 -1468725 + L1ME LINE L1 5345 5392 -770 2033 97 4 0 chr9 116393902 116394161 -1468466 + AluSq SINE Alu 41 300 -13 426 327 134 59 chr9 116394161 116394481 -1468146 + L1ME LINE L1 5392 5745 -417 24 0 0 0 chr9 116395315 116395339 -1467288 + AT_rich Low_complexity Low_complexity 1 24 0 548 167 0 0 chr9 116395356 116395452 -1467175 - FRAM SINE Alu -71 105 10 1402 163 23 0 chr9 116395562 116395783 -1466844 - AluJo SINE Alu -17 295 70 2256 120 0 0 chr9 116396091 116396392 -1466235 - AluSx SINE Alu -11 301 1 243 299 0 13 chr9 116396436 116396513 -1466114 + (CA)n Simple_repeat Simple_repeat 1 76 0 1835 127 48 64 chr9 116396665 116396979 -1465648 - AluSx SINE Alu -3 309 1 562 222 114 0 chr9 116397004 116397171 -1465456 - MER53 DNA DNA -3 186 1 187 216 0 59 chr9 116397289 116397340 -1465287 - L2 LINE L2 0 3313 3266 2123 131 3 0 chr9 116397555 116397852 -1464775 - AluSx SINE Alu -14 298 1 222 118 0 0 chr9 116397855 116397889 -1464738 + (T)n Simple_repeat Simple_repeat 1 34 0 6211 221 37 136 chr9 116397929 116399579 -1463048 - L1MC3 LINE L1 -8 7777 5965 2048 125 4 0 chr9 116399579 116399884 -1462743 + AluSx SINE Alu 1 306 0 6211 221 37 136 chr9 116399884 116400352 -1462275 - L1MC3 LINE L1 -1820 5965 5992 2331 101 3 10 chr9 116400352 116400658 -1461969 - AluSp SINE Alu -9 304 1 6211 221 37 136 chr9 116400658 116401361 -1461266 - L1MC3 LINE L1 -1792 5993 5222 2736 57 6 0 chr9 116401506 116401859 -1460768 - THE1A LTR MaLR 0 355 1 522 209 78 58 chr9 116402030 116402221 -1460406 + L2 LINE L2 3112 3306 -7 1264 138 46 10 chr9 116402347 116402543 -1460084 + AluJb SINE Alu 85 287 -25 29 0 0 0 chr9 116402543 116402572 -1460055 + AT_rich Low_complexity Low_complexity 1 29 0 1666 105 130 0 chr9 116403342 116403580 -1459047 - AluSx SINE Alu -4 308 40 888 198 17 114 chr9 116403628 116403945 -1458682 + MER33 DNA MER1_type 1 281 -2304 2355 103 0 3 chr9 116403945 116404256 -1458371 + AluSg SINE Alu 1 310 0 888 198 17 114 chr9 116404256 116404296 -1458331 + MER33 DNA MER1_type 281 323 -1 2339 102 3 7 chr9 116404864 116405169 -1457458 + AluSx SINE Alu 1 304 -8 2359 99 0 3 chr9 116405597 116405899 -1456728 + AluSc SINE Alu 1 301 -8 1140 207 40 82 chr9 116405913 116406105 -1456522 - MLT1B LTR MaLR -2 388 220 315 0 0 0 chr9 116406105 116406140 -1456487 + (TC)n Simple_repeat Simple_repeat 2 36 0 1140 207 40 82 chr9 116406140 116406352 -1456275 - MLT1B LTR MaLR -170 220 1 207 0 0 0 chr9 116406358 116406381 -1456246 + (A)n Simple_repeat Simple_repeat 1 23 0 1697 186 21 0 chr9 116406397 116406687 -1455940 + AluJb SINE Alu 2 297 -15 805 314 66 28 chr9 116406849 116407146 -1455481 - L1MC4a LINE L1 -1875 5933 5612 5349 77 16 4 chr9 116407146 116407903 -1454724 - MER4E LTR ERV1 0 766 1 805 314 66 28 chr9 116407903 116408042 -1454585 - L1MC4a LINE L1 -2196 5612 5480 804 136 99 0 chr9 116408073 116408235 -1454392 + LTR10B LTR ERV1 1 178 -369 316 331 58 22 chr9 116408337 116408476 -1454151 + L1M4c LINE L1 2332 2475 -3909 295 226 39 20 chr9 116408561 116408663 -1453964 - L1MC4a LINE L1 -1676 4470 4367 2686 108 54 11 chr9 116408673 116409119 -1453508 + MER4C LTR ERV1 1 465 0 257 137 98 20 chr9 116409123 116409174 -1453453 + MER4C-int LTR ERV1 3 57 -6541 853 99 0 0 chr9 116409190 116409301 -1453326 - AluSg/x SINE Alu -13 299 189 4508 123 24 23 chr9 116409309 116410060 -1452567 + MER4E LTR ERV1 22 773 -6 1290 151 214 27 chr9 116410066 116410453 -1452174 + MER4C-int LTR ERV1 53 563 -6035 1408 152 29 108 chr9 116410607 116410922 -1451705 + LTR10B LTR ERV1 258 547 0 374 210 6 44 chr9 116410928 116411078 -1451549 + MER4C-int LTR ERV1 622 831 -5767 1271 228 40 95 chr9 116411107 116411220 -1451407 + MER4C-int LTR ERV1 1839 1957 -5222 2285 211 22 64 chr9 116411220 116411859 -1450768 - LTR9 LTR ERV1 0 612 1 1271 228 40 95 chr9 116411859 116412190 -1450437 + MER4C-int LTR ERV1 1957 3096 -4083 418 161 0 0 chr9 116412174 116412236 -1450391 + PABL_A-int LTR ERV1 2661 2722 -3224 * 440 230 163 7 chr9 116412286 116412421 -1450206 + MER34C LTR ERV1 162 317 -268 2225 163 54 48 chr9 116412421 116413012 -1449615 + PABL_A-int LTR ERV1 1197 3024 -3524 540 226 58 51 chr9 116413013 116413150 -1449477 + PABL_A-int LTR ERV1 1029 1166 -5592 564 209 17 0 chr9 116413175 116413347 -1449280 + (TG)n Simple_repeat Simple_repeat 2 176 0 316 191 21 0 chr9 116413358 116413452 -1449175 + (TG)n Simple_repeat Simple_repeat 1 96 0 1142 180 11 37 chr9 116413452 116413724 -1448903 + PABL_A-int LTR ERV1 846 1110 -7010 888 101 7 7 chr9 116413721 116413870 -1448757 + PABL_A-int LTR ERV1 1606 1754 -5004 * 529 82 0 0 chr9 116413870 116413943 -1448684 - MER4C LTR ERV1 0 465 393 1822 149 6 24 chr9 116413944 116414300 -1448327 - MER4A LTR ERV1 0 664 257 594 115 21 10 chr9 116414297 116414393 -1448234 - MER4A LTR ERV1 -567 97 1 * 2840 153 46 13 chr9 116414393 116414913 -1447714 - MER4B LTR ERV1 -72 538 2 3925 146 73 42 chr9 116414914 116415193 -1447434 + PABL_A-int LTR ERV1 2750 3019 -3579 3003 88 26 31 chr9 116415193 116415455 -1447172 - MLT2A2 LTR ERVL 0 453 192 2503 70 0 3 chr9 116415455 116415756 -1446871 - AluY SINE Alu -11 300 1 3003 88 26 31 chr9 116415756 116415948 -1446679 - MLT2A2 LTR ERVL -261 192 1 3925 146 73 42 chr9 116415948 116416535 -1446092 + PABL_A-int LTR ERV1 3019 3654 -2944 1977 147 10 7 chr9 116416535 116416835 -1445792 + AluSx SINE Alu 1 301 -11 3925 146 73 42 chr9 116416835 116416966 -1445661 + PABL_A-int LTR ERV1 3654 3779 -2819 1672 152 147 14 chr9 116416962 116417330 -1445297 + PABL_A-int LTR ERV1 3942 4358 -2240 * 299 143 351 13 chr9 116417318 116417395 -1445232 + PABL_A-int LTR ERV1 5627 5729 -869 * 546 128 0 12 chr9 116417395 116417481 -1445146 - MER4C LTR ERV1 -89 376 292 3900 93 99 11 chr9 116419118 116419211 -1443416 + PABL_B LTR ERV1 1 84 -583 2429 70 0 38 chr9 116419211 116419526 -1443101 + AluSx SINE Alu 1 303 -9 3900 93 99 11 chr9 116419526 116420045 -1442582 + PABL_B LTR ERV1 84 667 0 16780 180 22 9 chr9 116420054 116421046 -1441581 + PABL_A-int LTR ERV1 3205 4183 -2939 2326 95 0 13 chr9 116421046 116421350 -1441277 + AluSx SINE Alu 1 300 -12 16780 180 22 9 chr9 116421350 116423268 -1439359 + PABL_A-int LTR ERV1 4183 6152 -970 272 146 42 0 chr9 116423274 116423322 -1439305 + PABL_A-int LTR ERV1 6105 6154 -968 323 160 0 0 chr9 116423323 116423373 -1439254 + PABL_A-int LTR ERV1 6105 6154 -968 5320 191 20 36 chr9 116423374 116423455 -1439172 + PABL_A-int LTR ERV1 6105 6186 -936 2241 91 13 7 chr9 116423455 116423753 -1438874 - AluSx SINE Alu -12 300 1 5320 191 20 36 chr9 116423753 116424284 -1438343 + PABL_A-int LTR ERV1 6186 6697 -425 2413 59 14 0 chr9 116424284 116424573 -1438054 + AluY SINE Alu 3 295 -16 5320 191 20 36 chr9 116424573 116424993 -1437634 + PABL_A-int LTR ERV1 6697 7122 0 3714 103 80 32 chr9 116424993 116425622 -1437005 + PABL_A LTR ERV1 1 659 -1 489 261 173 23 chr9 116428837 116429244 -1433383 - MLT1D LTR MaLR 0 467 1 348 181 0 0 chr9 116429474 116429557 -1433070 + C-rich Low_complexity Low_complexity 2 84 0 288 333 24 15 chr9 116429728 116429922 -1432705 + L1MD2 LINE L1 5908 6124 -67 2227 109 0 0 chr9 116430796 116431080 -1431547 + AluSq SINE Alu 1 284 -29 230 0 0 32 chr9 116431080 116431111 -1431516 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 327 234 102 12 chr9 116431111 116431278 -1431349 + L2 LINE L2 2533 2714 -600 285 180 0 0 chr9 116431414 116431464 -1431163 - MLT1C LTR MaLR -361 106 57 2223 100 47 33 chr9 116431712 116432071 -1430556 + THE1B LTR MaLR 1 364 0 1175 247 108 10 chr9 116434628 116435037 -1427590 - MLT1D LTR MaLR -56 449 1 311 250 81 89 chr9 116435037 116435138 -1427489 + L1MB3 LINE L1 2291 2391 -3755 1894 129 11 14 chr9 116435138 116435244 -1427383 + AluJo SINE Alu 28 133 -179 2135 115 0 7 chr9 116435244 116435572 -1427055 + AluSx SINE Alu 6 331 0 1894 129 11 14 chr9 116435572 116435750 -1426877 + AluJo SINE Alu 133 312 0 311 250 81 89 chr9 116435750 116435884 -1426743 + L1MB3 LINE L1 2391 2524 -3622 753 271 42 11 chr9 116435923 116436207 -1426420 - MLT1D LTR MaLR -2 503 211 279 205 13 13 chr9 116436242 116436320 -1426307 + L1MC1 LINE L1 5946 6023 -310 921 129 0 0 chr9 116436320 116436452 -1426175 + AluJb SINE Alu 171 302 -10 945 240 217 16 chr9 116436582 116437089 -1425538 + L1ME2 LINE L1 5218 5827 -337 493 189 54 81 chr9 116437069 116437201 -1425426 + L1MB3 LINE L1 4119 4244 -1902 * 1817 134 6 48 chr9 116437201 116437515 -1425112 + AluJb SINE Alu 1 301 -11 493 189 54 81 chr9 116437515 116437604 -1425023 + L1MB3 LINE L1 4244 4334 -1812 1102 228 118 35 chr9 116437919 116438239 -1424388 + L1MB3 LINE L1 5540 5832 -342 2273 86 10 10 chr9 116438239 116438542 -1424085 + AluSq SINE Alu 1 303 -10 2295 111 0 16 chr9 116438544 116438859 -1423768 + AluSx SINE Alu 1 310 -2 1102 228 118 35 chr9 116438859 116438960 -1423667 + L1MB3 LINE L1 5832 5999 -175 1344 183 81 18 chr9 116438982 116439267 -1423360 - AluJo SINE Alu -9 303 1 706 150 18 0 chr9 116439270 116439383 -1423244 - AluJo/FLAM SINE Alu -185 127 13 591 238 14 0 chr9 116439402 116439549 -1423078 + L1MB3 LINE L1 6027 6175 -8 396 135 0 0 chr9 116440943 116441017 -1421610 + (CTGGGG)n Simple_repeat Simple_repeat 6 79 0 339 266 7 22 chr9 116441078 116441217 -1421410 + (CTGGGG)n Simple_repeat Simple_repeat 4 140 0 1822 201 29 99 chr9 116442791 116443274 -1419353 - LTR2 LTR ERV1 0 449 1 1019 162 0 0 chr9 116443389 116443568 -1419059 - MER72 LTR ERV1 0 722 544 2148 89 7 20 chr9 116444976 116445279 -1417348 - AluSq SINE Alu -14 299 1 182 91 30 0 chr9 116445457 116445490 -1417137 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 190 198 167 42 chr9 116445822 116445918 -1416709 + MIR3 SINE MIR 81 188 -20 228 290 0 54 chr9 116447976 116448162 -1414465 + (AGGTG)n Simple_repeat Simple_repeat 4 179 0 * 443 240 0 45 chr9 116448069 116448248 -1414379 + (GGGTG)n Simple_repeat Simple_repeat 1 171 0 2411 109 35 16 chr9 116452388 116452756 -1409871 + THE1C LTR MaLR 1 375 0 188 240 0 33 chr9 116453664 116453785 -1408842 + (CA)n Simple_repeat Simple_repeat 1 117 0 403 254 17 44 chr9 116453847 116454028 -1408599 + (CA)n Simple_repeat Simple_repeat 1 176 0 330 287 5 53 chr9 116454084 116454272 -1408355 + (CA)n Simple_repeat Simple_repeat 1 179 0 2058 165 58 0 chr9 116454277 116454670 -1407957 + MSTB LTR MaLR 4 419 -7 186 133 0 0 chr9 116457184 116457214 -1405413 + (TCCCC)n Simple_repeat Simple_repeat 1 30 0 28 48 0 0 chr9 116464600 116464642 -1397985 + GC_rich Low_complexity Low_complexity 1 42 0 21 82 0 0 chr9 116464804 116464853 -1397774 + GC_rich Low_complexity Low_complexity 1 49 0 278 200 17 0 chr9 116465884 116465944 -1396683 + MIR3 SINE MIR 111 171 -37 528 240 25 0 chr9 116468604 116468725 -1393902 + MIR SINE MIR 58 181 -81 231 301 14 0 chr9 116468851 116468924 -1393703 - L1ME LINE L1 -454 5667 5594 823 170 0 7 chr9 116469535 116469676 -1392951 + FLAM_C SINE Alu 1 140 -3 380 350 0 17 chr9 116470738 116470915 -1391712 + (CATATA)n Simple_repeat Simple_repeat 4 177 0 1745 164 24 3 chr9 116471079 116471371 -1391256 - AluJb SINE Alu -8 304 7 2294 92 0 0 chr9 116472220 116472513 -1390114 - AluSx SINE Alu -19 293 1 469 359 22 16 chr9 116472585 116472825 -1389802 - L1ME LINE L1 -913 5233 4992 389 376 54 0 chr9 116473128 116473349 -1389278 - L1ME LINE L1 -1320 4826 4594 261 267 78 11 chr9 116474492 116474582 -1388045 - MIR SINE MIR -63 145 50 224 152 22 0 chr9 116476976 116477051 -1385576 + (CCCCAG)n Simple_repeat Simple_repeat 1 76 0 191 32 65 0 chr9 116477065 116477096 -1385531 + (CCCG)n Simple_repeat Simple_repeat 1 33 0 28 91 0 0 chr9 116477108 116477185 -1385442 + GC_rich Low_complexity Low_complexity 1 77 0 23 54 0 0 chr9 116477433 116477470 -1385157 + GC_rich Low_complexity Low_complexity 1 37 0 508 199 53 13 chr9 116479126 116479277 -1383350 - L1MB5 LINE L1 -59 6115 5959 1369 244 62 6 chr9 116485194 116485547 -1377080 - MLT1A2 LTR MaLR -1 373 1 580 249 28 28 chr9 116487206 116487383 -1375244 + MER53 DNA DNA 7 183 -6 184 307 40 13 chr9 116487743 116487818 -1374809 - MIR3 SINE MIR -51 157 81 405 256 116 26 chr9 116487886 116488118 -1374509 + MLT1C LTR MaLR 19 270 -197 304 245 113 0 chr9 116488166 116488272 -1374355 + MLT1C LTR MaLR 350 467 0 684 164 0 0 chr9 116489282 116489416 -1373211 + CT-rich Low_complexity Low_complexity 1 134 0 900 169 0 0 chr9 116489428 116489606 -1373021 + CT-rich Low_complexity Low_complexity 1 178 0 795 192 0 0 chr9 116489622 116489799 -1372828 + CT-rich Low_complexity Low_complexity 2 178 0 239 215 15 0 chr9 116489816 116489881 -1372746 + CT-rich Low_complexity Low_complexity 2 67 0 287 236 0 47 chr9 116489918 116490045 -1372582 + G-rich Low_complexity Low_complexity 1 121 0 896 183 6 0 chr9 116490145 116490506 -1372121 + CT-rich Low_complexity Low_complexity 1 363 0 471 265 135 8 chr9 116491084 116491344 -1371283 + MLT1D LTR MaLR 206 498 -7 804 228 15 20 chr9 116491949 116492146 -1370481 + MLT1B LTR MaLR 1 196 -194 1067 293 74 7 chr9 116492196 116492640 -1369987 + MLT1E2 LTR MaLR 137 610 -16 303 316 8 0 chr9 116492664 116492781 -1369846 - L1MC5 LINE L1 -519 7442 7325 1479 219 110 60 chr9 116493312 116493732 -1368895 + MLT1D LTR MaLR 1 449 -56 2179 129 0 0 chr9 116493732 116494042 -1368585 + AluJb SINE Alu 1 310 -2 1479 219 110 60 chr9 116494042 116494101 -1368526 + MLT1D LTR MaLR 449 504 -1 431 236 97 0 chr9 116494146 116494290 -1368337 - L1MC4 LINE L1 -1064 6978 6821 731 311 36 57 chr9 116494385 116494945 -1367682 - HAL1b LINE L1 -542 806 259 288 0 0 0 chr9 116494989 116495021 -1367606 + (TA)n Simple_repeat Simple_repeat 1 32 0 259 65 43 0 chr9 116495021 116495067 -1367560 + GA-rich Low_complexity Low_complexity 1 48 0 2051 99 7 7 chr9 116495067 116495349 -1367278 - AluSx SINE Alu -30 282 1 302 45 23 0 chr9 116495781 116495825 -1366802 + (TC)n Simple_repeat Simple_repeat 2 46 0 243 146 0 0 chr9 116495827 116495868 -1366759 + (TTCC)n Simple_repeat Simple_repeat 4 44 0 542 292 6 11 chr9 116496210 116496388 -1366239 + C-rich Low_complexity Low_complexity 2 178 0 594 253 0 3 chr9 116496461 116496760 -1365867 + C-rich Low_complexity Low_complexity 1 297 0 41 21 0 0 chr9 116499709 116499757 -1362870 + GC_rich Low_complexity Low_complexity 1 48 0 27 49 0 0 chr9 116499812 116499853 -1362774 + GC_rich Low_complexity Low_complexity 1 41 0 190 359 0 39 chr9 116500559 116500637 -1361990 - L2 LINE L2 -11 3261 3187 207 378 45 9 chr9 116500946 116501057 -1361570 - MIR SINE MIR -79 183 69 206 351 26 18 chr9 116501344 116501458 -1361169 - MIR SINE MIR -29 233 119 1671 171 16 0 chr9 116503074 116503390 -1359237 - MLT1B LTR MaLR -63 327 7 180 0 0 0 chr9 116504034 116504054 -1358573 + (TCCCC)n Simple_repeat Simple_repeat 2 21 0 221 350 169 6 chr9 116504861 116505038 -1357589 + MIR SINE MIR 45 250 -12 257 218 26 26 chr9 116505797 116505875 -1356752 + (TCTG)n Simple_repeat Simple_repeat 2 79 0 1697 168 30 3 chr9 116511069 116511372 -1351255 - AluJo SINE Alu -1 311 1 185 32 0 65 chr9 116512439 116512470 -1350157 + (CACCC)n Simple_repeat Simple_repeat 3 31 0 327 300 259 40 chr9 116515082 116515379 -1347248 - HAL1 LINE L1 -1540 967 606 363 223 131 0 chr9 116515402 116515532 -1347095 - HAL1 LINE L1 -1946 561 415 191 259 121 0 chr9 116515652 116515710 -1346917 + L2 LINE L2 3214 3278 -35 940 151 15 5 chr9 116515723 116516329 -1346298 + (TGGA)n Simple_repeat Simple_repeat 1 612 0 759 91 0 74 chr9 116524242 116524363 -1338264 - FLAM_A SINE Alu -12 130 19 281 175 10 82 chr9 116524703 116524800 -1337827 - MLT1C LTR MaLR -327 140 51 1869 149 7 13 chr9 116525377 116525679 -1336948 + AluJo SINE Alu 1 300 -12 1745 168 0 7 chr9 116525680 116525966 -1336661 + AluSx SINE Alu 1 284 -28 477 243 51 25 chr9 116526666 116527006 -1335621 - MLT1C LTR MaLR -36 431 42 249 249 31 23 chr9 116527031 116527127 -1335500 - MIR SINE MIR -65 143 101 1877 141 3 13 chr9 116527389 116527687 -1334940 + AluJb SINE Alu 1 295 -17 188 256 0 0 chr9 116535834 116535873 -1326754 - MIR SINE MIR -112 150 112 217 108 62 15 chr9 116537332 116537397 -1325230 + (TG)n Simple_repeat Simple_repeat 2 69 0 607 79 70 16 chr9 116537414 116537737 -1324890 + (TG)n Simple_repeat Simple_repeat 1 340 0 214 114 71 0 chr9 116537889 116537959 -1324668 + (TG)n Simple_repeat Simple_repeat 2 76 0 205 344 11 0 chr9 116537970 116538060 -1324567 + (TG)n Simple_repeat Simple_repeat 1 91 0 1262 300 139 46 chr9 116538788 116539533 -1323094 - L1MC4 LINE L1 0 8042 7145 2022 135 0 28 chr9 116539533 116539851 -1322776 - AluJb SINE Alu 0 312 4 1262 300 139 46 chr9 116539851 116540291 -1322336 - L1MC4 LINE L1 -897 7145 6747 211 270 32 0 chr9 116540973 116541036 -1321591 + C-rich Low_complexity Low_complexity 2 66 0 221 277 25 61 chr9 116541067 116541341 -1321286 + C-rich Low_complexity Low_complexity 1 263 0 279 336 71 0 chr9 116541487 116541600 -1321027 + MIR3 SINE MIR 81 201 -7 297 308 17 33 chr9 116543205 116543325 -1319302 - MIR3 SINE MIR -35 173 56 340 255 10 59 chr9 116544873 116544975 -1317652 - L1ME4a LINE L1 -11 6110 6014 832 152 0 0 chr9 116545089 116545214 -1317413 + FLAM_C SINE Alu 2 126 -17 2115 97 34 0 chr9 116545219 116545517 -1317110 + AluSx SINE Alu 1 308 -4 548 252 145 13 chr9 116545890 116546252 -1316375 - MER45B DNA AcHobo -51 989 556 965 266 126 0 chr9 116546393 116546829 -1315798 + MLT1D LTR MaLR 9 499 -6 203 309 11 32 chr9 116547139 116547233 -1315394 + (CA)n Simple_repeat Simple_repeat 1 92 0 414 0 0 0 chr9 116547770 116547816 -1314811 + (TCCC)n Simple_repeat Simple_repeat 4 49 0 189 0 0 0 chr9 116548697 116548718 -1313909 + (CCCA)n Simple_repeat Simple_repeat 1 21 0 231 36 0 0 chr9 116549454 116549482 -1313145 + (CCCTG)n Simple_repeat Simple_repeat 3 30 0 209 261 0 87 chr9 116550083 116550175 -1312452 + MIR3 SINE MIR 84 167 -41 290 221 44 0 chr9 116552804 116552872 -1309755 - MIR SINE MIR -79 183 113 1108 187 131 89 chr9 116558399 116558439 -1304188 + L1MCa LINE L1 1930 1967 -4459 1674 162 3 34 chr9 116558439 116558760 -1303867 + AluJb SINE Alu 1 311 -1 1108 187 131 89 chr9 116558760 116559237 -1303390 + L1MCa LINE L1 1967 2469 -3957 2183 96 3 19 chr9 116559237 116559550 -1303077 + AluSx SINE Alu 1 308 -4 220 212 62 62 chr9 116560979 116561092 -1301535 + L2 LINE L2 2293 2405 -909 219 186 0 0 chr9 116562060 116562103 -1300524 + (TGAA)n Simple_repeat Simple_repeat 2 44 0 1773 160 0 4 chr9 116563040 116563321 -1299306 - AluJb SINE Alu -11 301 22 21 0 0 0 chr9 116563324 116563345 -1299282 + AT_rich Low_complexity Low_complexity 1 21 0 973 159 11 0 chr9 116563592 116563768 -1298859 + MLT1B LTR MaLR 1 178 -212 2321 68 0 3 chr9 116563768 116564064 -1298563 + AluY SINE Alu 1 295 -16 384 276 238 5 chr9 116564072 116564221 -1298406 + L1ME LINE L1 4443 4556 -1590 378 0 0 0 chr9 116564221 116564263 -1298364 + (GGGGA)n Simple_repeat Simple_repeat 1 42 0 384 276 238 5 chr9 116564263 116564323 -1298304 + L1ME LINE L1 4556 4701 -1445 1050 232 98 39 chr9 116564406 116564863 -1297764 - MLT1D LTR MaLR 0 505 22 360 383 6 23 chr9 116564929 116565104 -1297523 + L1ME LINE L1 4863 5034 -1112 2286 91 0 19 chr9 116565129 116565447 -1297180 - AluSx SINE Alu 0 312 1 256 267 38 0 chr9 116565620 116565725 -1296902 + L1M LINE L1 5318 5426 -736 2277 76 7 0 chr9 116565726 116566015 -1296612 + AluSg SINE Alu 1 291 -19 362 327 20 60 chr9 116566137 116566336 -1296291 + L1ME LINE L1 5272 5462 -700 509 220 83 0 chr9 116566698 116566830 -1295797 + MER104 DNA Tc2 35 177 -3 2259 97 0 3 chr9 116567489 116567789 -1294838 + AluSx SINE Alu 1 299 -13 2238 91 7 7 chr9 116569903 116570201 -1292426 - AluSx SINE Alu -14 298 1 269 267 147 0 chr9 116570725 116570841 -1291786 - MIR3 SINE MIR -9 199 67 2236 227 51 79 chr9 116575117 116575972 -1286655 + L1MB7 LINE L1 5352 6174 -10 2038 114 48 3 chr9 116575974 116576263 -1286364 + AluSx SINE Alu 1 302 -10 230 165 193 0 chr9 116576597 116576706 -1285921 + Charlie1 DNA MER1_type 2501 2630 -131 522 274 147 38 chr9 116576888 116577384 -1285243 + MER68 LTR ERV1 13 562 0 273 253 30 30 chr9 116578168 116578267 -1284360 + L2 LINE L2 2887 2985 -328 237 245 158 22 chr9 116579406 116579545 -1283082 + L1ME LINE L1 10 167 -5903 397 327 36 91 chr9 116579612 116579921 -1282706 + L1ME LINE L1 265 556 -5514 908 309 81 45 chr9 116580239 116580663 -1281964 + L1MC4 LINE L1 7414 7868 -174 1800 156 0 37 chr9 116580663 116580984 -1281643 - AluJb SINE Alu -1 311 3 908 309 81 45 chr9 116580984 116581165 -1281462 + L1MC4 LINE L1 7868 8041 -1 986 126 0 0 chr9 116582704 116582839 -1279788 + AluSq/x SINE Alu 1 135 -177 2013 118 3 41 chr9 116582839 116583153 -1279474 + AluSx SINE Alu 1 302 -10 884 256 131 0 chr9 116583291 116583565 -1279062 - MER7A DNA MER2_type 0 346 39 491 295 88 64 chr9 116583710 116584039 -1278588 + MER58B DNA MER1_type 1 337 -4 730 264 94 18 chr9 116586719 116587186 -1275441 - Charlie1b DNA MER1_type -2 521 1 2149 128 0 0 chr9 116587672 116587977 -1274650 + AluSc SINE Alu 1 305 -4 344 270 112 13 chr9 116588649 116588801 -1273826 + L1ME LINE L1 5515 5681 -440 189 0 0 0 chr9 116589482 116589503 -1273124 + (CA)n Simple_repeat Simple_repeat 1 21 0 481 335 70 0 chr9 116591734 116591964 -1270663 + HERV16 LTR ERVL 480 725 -4271 7104 211 65 41 chr9 116591967 116592442 -1270185 + L1M2 LINE L1 2674 3136 -4429 1842 142 0 60 chr9 116592442 116592773 -1269854 + AluJo SINE Alu 1 311 -1 7104 211 65 41 chr9 116592773 116592794 -1269833 + L1M2 LINE L1 3136 3155 -4410 1975 126 3 0 chr9 116592794 116593119 -1269508 + AluSx SINE Alu 1 312 0 7104 211 65 41 chr9 116593119 116594111 -1268516 + L1M2 LINE L1 3155 4122 -3443 2166 89 33 3 chr9 116594111 116594413 -1268214 + AluSx SINE Alu 1 311 -1 7104 211 65 41 chr9 116594413 116594574 -1268053 + L1M2 LINE L1 4122 4278 -3287 768 171 0 55 chr9 116594574 116594720 -1267907 + FLAM_C SINE Alu 1 138 -5 7104 211 65 41 chr9 116594720 116596299 -1266328 + L1M2 LINE L1 4278 5818 -1747 1033 25 0 0 chr9 116596299 116596421 -1266206 - AluY SINE Alu -7 304 183 2699 10 0 0 chr9 116596301 116596603 -1266024 - AluYa5 SINE Alu -9 302 1 7104 211 65 41 chr9 116596603 116597265 -1265362 + L1M2 LINE L1 6000 6794 -771 16197 77 35 15 chr9 116597369 116600017 -1262610 + L1PA7 LINE L1 2955 5681 -473 2262 83 0 25 chr9 116600017 116600331 -1262296 + AluY SINE Alu 1 306 -5 16197 77 35 15 chr9 116600331 116600761 -1261866 + L1PA7 LINE L1 5681 6101 -53 342 138 0 0 chr9 116601396 116601454 -1261173 + (CA)n Simple_repeat Simple_repeat 2 59 0 481 301 61 55 chr9 116601525 116601939 -1260688 - L1ME3A LINE L1 -311 5859 5449 2034 169 31 3 chr9 116601939 116602295 -1260332 - MER47A DNA MER2_type 0 366 1 481 301 61 55 chr9 116602295 116602711 -1259916 - L1ME3A LINE L1 -721 5449 5024 254 289 63 63 chr9 116605101 116605433 -1257194 - L1M4 LINE L1 -818 5328 4997 634 129 9 5 chr9 116605732 116605861 -1256766 + L1MC4 LINE L1 6891 7088 -793 437 272 231 6 chr9 116605917 116606241 -1256386 + L1MC4 LINE L1 7227 7623 -419 425 227 42 25 chr9 116607286 116607405 -1255222 - L1M4 LINE L1 -2889 3257 3137 1638 165 50 0 chr9 116607418 116607697 -1254930 - AluJb SINE Alu -18 294 2 2502 78 3 40 chr9 116607708 116607943 -1254684 - L1PA14 LINE L1 -1 6160 5943 2150 106 0 0 chr9 116607943 116608236 -1254391 - AluSx SINE Alu -19 293 1 2502 78 3 40 chr9 116608236 116608371 -1254256 - L1PA14 LINE L1 -218 5943 5804 1908 120 0 27 chr9 116608414 116608715 -1253912 + AluSx SINE Alu 14 306 -6 2403 60 0 13 chr9 116608715 116609030 -1253597 + AluY SINE Alu 1 311 0 2044 143 36 33 chr9 116609077 116609440 -1253187 - THE1B LTR MaLR 0 364 1 342 308 49 7 chr9 116609611 116609754 -1252873 - HAL1 LINE L1 -338 2169 2021 448 294 70 9 chr9 116609903 116610360 -1252267 - HAL1 LINE L1 -943 1564 1052 380 198 55 0 chr9 116610547 116610638 -1251989 - HAL1 LINE L1 -1600 907 812 382 280 37 0 chr9 116611307 116611414 -1251213 - L2 LINE L2 -12 3301 3191 2036 198 92 31 chr9 116611508 116612028 -1250599 - MLT2B3 LTR ERVL 0 554 3 180 0 0 0 chr9 116612338 116612358 -1250269 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2185 73 0 0 chr9 116612362 116612636 -1249991 - AluY SINE Alu -37 274 1 1680 155 0 77 chr9 116612867 116613203 -1249424 + AluJb SINE Alu 1 310 -2 2309 98 0 0 chr9 116613260 116613566 -1249061 + AluSx SINE Alu 1 306 -6 1829 156 30 0 chr9 116614247 116614548 -1248079 - AluSx SINE Alu -2 310 1 520 163 0 0 chr9 116615121 116615201 -1247426 - FRAM/FAM SINE Alu -102 74 1 21 0 0 0 chr9 116615318 116615339 -1247288 + AT_rich Low_complexity Low_complexity 1 21 0 194 246 58 14 chr9 116616162 116616231 -1246396 - L3 LINE CR1 -1362 215 144 3173 166 99 6 chr9 116617358 116617995 -1244632 + L1MA9 LINE L1 5593 6288 -24 2094 125 0 3 chr9 116618801 116619112 -1243515 + AluSx SINE Alu 1 310 -2 385 368 40 7 chr9 116622679 116622983 -1239644 + MERVL LTR ERVL 4215 4528 -957 14364 130 21 118 chr9 116623252 116625732 -1236895 + L1P LINE L1 3 2722 -3424 2221 93 3 0 chr9 116625732 116626032 -1236595 + AluSp SINE Alu 1 301 -12 14364 130 21 118 chr9 116626032 116626276 -1236351 + L1P LINE L1 2722 2361 -3785 2066 74 3 11 chr9 116626276 116626559 -1236068 + AluY SINE Alu 1 281 -30 14364 130 21 118 chr9 116626559 116627099 -1235528 + L1P LINE L1 2360 2951 -3195 422 287 0 0 chr9 116629862 116629970 -1232657 + FLAM_C SINE Alu 4 111 -32 21 0 0 0 chr9 116629974 116629995 -1232632 + AT_rich Low_complexity Low_complexity 1 21 0 417 201 93 62 chr9 116630503 116630724 -1231903 + L1M2 LINE L1 1573 1932 -907 1582 232 92 43 chr9 116630726 116631106 -1231521 + Charlie1 DNA MER1_type 1611 2034 -727 2274 92 3 0 chr9 116631106 116631412 -1231215 - AluY SINE Alu -4 307 1 1582 232 92 43 chr9 116631412 116631639 -1230988 + Charlie1 DNA MER1_type 2034 2248 -513 292 164 137 0 chr9 116631644 116631717 -1230910 + L1MB7 LINE L1 5283 5365 -809 1979 139 0 0 chr9 116631717 116632018 -1230609 + AluSx SINE Alu 1 301 -11 3080 193 30 40 chr9 116632019 116632608 -1230019 + L1MB7 LINE L1 5480 6073 -111 2049 148 38 14 chr9 116632608 116632974 -1229653 + THE1C LTR MaLR 1 375 0 3080 193 30 40 chr9 116632974 116633008 -1229619 + L1MB7 LINE L1 6073 6106 -78 1612 180 0 10 chr9 116633008 116633314 -1229313 + AluSx SINE Alu 1 303 -9 3080 193 30 40 chr9 116633314 116633382 -1229245 + L1MB7 LINE L1 6106 6165 -19 1706 216 44 59 chr9 116633389 116633687 -1228940 + Charlie1 DNA MER1_type 2217 2518 -243 1671 175 7 3 chr9 116633687 116633973 -1228654 - AluJb SINE Alu -14 298 12 1706 216 44 59 chr9 116633973 116634144 -1228483 + Charlie1 DNA MER1_type 2518 2690 -71 735 183 0 0 chr9 116634144 116634275 -1228352 + FLAM_C SINE Alu 2 132 -1 1706 216 44 59 chr9 116634275 116634317 -1228310 + Charlie1 DNA MER1_type 2690 2723 -38 2083 93 10 3 chr9 116634317 116634608 -1228019 + AluSp SINE Alu 1 293 -20 1706 216 44 59 chr9 116634608 116634640 -1227987 + Charlie1 DNA MER1_type 2723 2754 -7 251 281 21 0 chr9 116634645 116634741 -1227886 + L1ME1 LINE L1 1761 1858 -4538 267 289 195 8 chr9 116634769 116634897 -1227730 + L1ME1 LINE L1 1918 2069 -4327 3883 252 107 18 chr9 116634933 116636716 -1225911 + L1ME1 LINE L1 2153 4056 -2159 1309 146 32 32 chr9 116636728 116636975 -1225652 + AluJo SINE Alu 42 288 -24 3698 232 82 49 chr9 116637008 116637709 -1224918 + L1ME1 LINE L1 4064 4741 -1494 2156 113 0 3 chr9 116637709 116638009 -1224618 - AluSq SINE Alu -14 299 1 3698 232 82 49 chr9 116638009 116638465 -1224162 + L1ME1 LINE L1 4741 5181 -1054 1976 105 21 3 chr9 116638465 116638751 -1223876 - AluSx SINE Alu -21 291 1 3698 232 82 49 chr9 116638751 116639226 -1223401 + L1ME1 LINE L1 5181 5639 -596 2061 133 0 0 chr9 116639226 116639527 -1223100 + AluSx SINE Alu 2 302 -10 3698 232 82 49 chr9 116639527 116639943 -1222684 + L1ME1 LINE L1 5639 6172 -63 204 40 0 0 chr9 116639995 116640020 -1222607 + (A)n Simple_repeat Simple_repeat 1 25 0 1550 178 16 32 chr9 116640022 116640331 -1222296 + AluJb SINE Alu 1 304 -8 326 279 132 10 chr9 116640357 116640554 -1222073 + HAL1 LINE L1 1364 1584 -923 324 220 33 66 chr9 116641412 116641503 -1221124 + HAL1 LINE L1 2002 2089 -418 283 289 142 5 chr9 116642430 116642620 -1220007 + L1ME4a LINE L1 5906 6121 0 1860 131 0 48 chr9 116643559 116643872 -1218755 + AluJb SINE Alu 1 298 -14 536 145 0 0 chr9 116645629 116645712 -1216915 + FRAM SINE Alu 72 154 -22 380 294 122 11 chr9 116646192 116646372 -1216255 - MIR SINE MIR -32 230 31 536 293 224 14 chr9 116647497 116647849 -1214778 + L2 LINE L2 1917 2342 -972 205 266 133 75 chr9 116648655 116648828 -1213799 - L2 LINE L2 -3 3310 3128 338 265 96 92 chr9 116651703 116651975 -1210652 + L1MCa LINE L1 829 1101 -5308 407 270 90 18 chr9 116653362 116653662 -1208965 + L1ME LINE L1 64 628 -5902 1229 257 115 39 chr9 116653838 116654747 -1207880 + L1ME LINE L1 775 1723 -4817 689 128 48 48 chr9 116654921 116655046 -1207581 + FLAM_C SINE Alu 2 126 -17 2282 94 7 0 chr9 116655069 116655377 -1207250 + AluSg SINE Alu 1 310 0 1619 217 0 3 chr9 116655406 116655719 -1206908 + AluJo SINE Alu 1 312 0 381 325 78 37 chr9 116655721 116656099 -1206528 + L1MCa LINE L1 1095 2367 -1307 248 271 53 33 chr9 116656112 116656263 -1206364 + L1M4 LINE L1 1526 1679 -4863 4360 222 110 32 chr9 116656329 116659250 -1203377 + L1ME2 LINE L1 4 3127 -3279 1444 207 80 3 chr9 116659270 116659570 -1203057 + MLT1A1 LTR MaLR 1 323 -42 325 183 0 0 chr9 116659576 116659636 -1202991 - MER44D DNA MER2_type 0 705 646 1694 174 7 3 chr9 116659685 116659973 -1202654 - AluJo SINE Alu -23 289 1 2188 176 47 12 chr9 116659973 116660399 -1202228 - MER44D DNA MER2_type -233 472 32 881 204 25 21 chr9 116660439 116660679 -1201948 + L1ME2 LINE L1 3149 3389 -3017 * 918 206 18 18 chr9 116660657 116660880 -1201747 + L1MD1 LINE L1 6259 6481 -21 820 167 23 0 chr9 116660882 116661014 -1201613 + AluJo SINE Alu 1 135 -177 1744 221 101 8 chr9 116661023 116661595 -1201032 + L1ME2 LINE L1 5523 6150 -274 472 308 118 0 chr9 116661603 116661798 -1200829 + L1ME2 LINE L1 6198 6415 -9 822 95 71 16 chr9 116661826 116661952 -1200675 + FLAM_C SINE Alu 1 133 0 1642 174 11 0 chr9 116662557 116662838 -1199789 - AluJo SINE Alu -24 288 5 2322 77 0 7 chr9 116662931 116663230 -1199397 + AluY SINE Alu 1 297 -14 2075 113 7 0 chr9 116663447 116663739 -1198888 - AluSx SINE Alu -18 294 1 1574 137 13 57 chr9 116664020 116664319 -1198308 + AluJb SINE Alu 16 301 -11 215 205 333 0 chr9 116664670 116664748 -1197879 - L2 LINE L2 -7 3306 3203 180 284 63 32 chr9 116665487 116665582 -1197045 + MIR3 SINE MIR 84 181 -27 1401 141 6 114 chr9 116666777 116667118 -1195509 + AluYa8 SINE Alu 7 310 0 462 179 0 0 chr9 116667119 116667203 -1195424 + FLAM_A SINE Alu 35 118 -24 279 288 27 14 chr9 116667205 116667278 -1195349 - AluJ/FLAM SINE Alu -227 75 2 2113 95 7 0 chr9 116667372 116667666 -1194961 + AluSg SINE Alu 1 296 -14 226 152 0 61 chr9 116669617 116669683 -1192944 + C-rich Low_complexity Low_complexity 4 65 0 27 49 0 0 chr9 116669886 116669927 -1192700 + GC_rich Low_complexity Low_complexity 1 41 0 206 218 0 18 chr9 116669974 116670029 -1192598 + (CCG)n Simple_repeat Simple_repeat 3 56 0 186 143 0 0 chr9 116670542 116670577 -1192050 + (CGG)n Simple_repeat Simple_repeat 3 37 0 253 215 31 0 chr9 116670626 116670694 -1191933 + C-rich Low_complexity Low_complexity 1 70 0 356 189 15 98 chr9 116671607 116671739 -1190888 - L1 LINE L1 -2598 3548 3428 533 323 86 9 chr9 116671768 116672173 -1190454 - L2 LINE L2 -252 3061 2629 1274 216 11 85 chr9 116672228 116672580 -1190047 - L1M4 LINE L1 -1826 4320 3995 685 124 0 0 chr9 116672581 116672678 -1189949 + AluS SINE Alu 2 98 -215 237 182 0 0 chr9 116672781 116672825 -1189802 + Alu SINE Alu 129 172 -131 2053 122 3 0 chr9 116672886 116673181 -1189446 - AluSx SINE Alu -16 296 1 1138 218 162 39 chr9 116673181 116673561 -1189066 - L1M4 LINE L1 -2156 3990 3522 661 231 0 8 chr9 116673561 116673695 -1188932 - FLAM_A SINE Alu 0 133 1 1138 218 162 39 chr9 116673695 116673856 -1188771 - L1M4 LINE L1 -2624 3522 3382 235 303 0 0 chr9 116673861 116673927 -1188700 - L2 LINE L2 -864 2450 2385 363 336 84 14 chr9 116674006 116674220 -1188407 - L2 LINE L2 -961 2353 2125 2079 98 56 27 chr9 116674329 116674667 -1187960 - THE1B LTR MaLR 0 364 17 1638 105 9 0 chr9 116675390 116675618 -1187009 + AluSg/x SINE Alu 78 307 -3 1736 183 0 7 chr9 116675626 116675932 -1186695 + AluJb SINE Alu 1 304 -8 2456 62 3 0 chr9 116675972 116676279 -1186348 - AluY SINE Alu -3 308 1 375 130 0 0 chr9 116676648 116676702 -1185925 + MLT1D LTR MaLR 26 79 -426 1073 186 93 96 chr9 116676702 116677020 -1185607 - MLT1A1 LTR MaLR 0 365 47 2225 143 86 36 chr9 116677020 116677286 -1185341 - MER65A LTR ERV1 -1 444 148 2139 130 0 0 chr9 116677286 116677586 -1185041 + AluSx SINE Alu 1 300 -12 2225 143 86 36 chr9 116677586 116677740 -1184887 - MER65A LTR ERV1 -297 148 3 1073 186 93 96 chr9 116677740 116677787 -1184840 - MLT1A1 LTR MaLR -318 47 1 * 2076 179 44 16 chr9 116677787 116678206 -1184421 + MLT1D LTR MaLR 75 505 0 1151 265 40 12 chr9 116678567 116678895 -1183732 + Charlie4a DNA MER1_type 48 384 -124 6799 191 81 45 chr9 116678931 116679500 -1183127 + L1MB3 LINE L1 3508 4055 -2128 2034 125 3 0 chr9 116679500 116679796 -1182831 + AluSp SINE Alu 1 297 -16 6799 191 81 45 chr9 116679796 116680671 -1181956 + L1MB3 LINE L1 4055 4897 -1286 374 180 0 0 chr9 116680671 116680732 -1181895 + AluJo SINE Alu 2 62 -240 2055 101 7 14 chr9 116680742 116681029 -1181598 + AluSc SINE Alu 1 285 -24 1485 153 12 8 chr9 116681031 116681279 -1181348 + AluJo SINE Alu 55 303 -9 6799 191 81 45 chr9 116681279 116681420 -1181207 + L1MB3 LINE L1 4905 5039 -1144 2001 136 7 3 chr9 116681420 116681730 -1180897 + AluJb SINE Alu 1 311 -1 6799 191 81 45 chr9 116681730 116682495 -1180132 + L1MB3 LINE L1 5039 6032 -151 246 233 116 35 chr9 116682908 116682994 -1179633 + FRAM/FAM SINE Alu 3 79 -87 1201 145 36 0 chr9 116683234 116683427 -1179200 + AluJo SINE Alu 9 208 -104 311 167 0 0 chr9 116684259 116684313 -1178314 - MER106B DNA MER1_type -917 142 89 29 21 0 21 chr9 116685529 116685554 -1177073 + AT_rich Low_complexity Low_complexity 1 26 -20 818 104 26 0 chr9 116685554 116685669 -1176958 - FLAM_C SINE Alu -15 118 1 29 21 0 21 chr9 116685669 116685690 -1176937 + AT_rich Low_complexity Low_complexity 26 46 0 1939 106 23 30 chr9 116685745 116686048 -1176579 - AluSx SINE Alu -1 311 11 1052 110 0 0 chr9 116686058 116686204 -1176423 - AluSq SINE Alu -20 293 148 575 92 0 0 chr9 116686204 116686280 -1176347 - Alu SINE Alu -233 77 2 2213 79 0 20 chr9 116686281 116686584 -1176043 - AluSc SINE Alu -12 297 1 2316 62 0 3 chr9 116687120 116687411 -1175216 + AluY SINE Alu 6 295 -16 1078 153 0 11 chr9 116687411 116687588 -1175039 + AluSg/x SINE Alu 134 308 -4 1507 247 50 5 chr9 116687906 116688347 -1174280 - L1MB5 LINE L1 -1 6173 5713 697 111 0 0 chr9 116688612 116688702 -1173925 - AluSp/q SINE Alu -30 283 194 1538 183 16 10 chr9 116689052 116689358 -1173269 + AluJo SINE Alu 1 308 -4 1954 117 17 0 chr9 116689359 116689649 -1172978 + AluSg SINE Alu 1 295 -15 351 301 118 16 chr9 116690142 116690388 -1172239 - MLT1G LTR MaLR -300 290 20 202 258 0 21 chr9 116690913 116691010 -1171617 + (CA)n Simple_repeat Simple_repeat 2 96 0 234 281 0 20 chr9 116691060 116691206 -1171421 + (CA)n Simple_repeat Simple_repeat 1 143 0 194 169 42 14 chr9 116691224 116691295 -1171332 + (CA)n Simple_repeat Simple_repeat 1 73 0 2489 54 0 0 chr9 116695308 116695605 -1167022 - AluY SINE Alu -14 297 1 2310 93 0 13 chr9 116697597 116697909 -1164718 + AluY SINE Alu 1 308 -3 1725 154 3 62 chr9 116698090 116698415 -1164212 - AluJo SINE Alu -6 306 1 1459 198 49 0 chr9 116698583 116698871 -1163756 + AluJo SINE Alu 2 303 -9 226 230 103 11 chr9 116698876 116698963 -1163664 + L1M LINE L1 5332 5426 -877 2478 66 0 0 chr9 116698963 116699267 -1163360 + AluY SINE Alu 1 304 -7 304 250 10 42 chr9 116699326 116699422 -1163205 + Alu SINE Alu 207 299 -1 237 275 67 25 chr9 116699582 116699702 -1162925 + L1M4 LINE L1 4957 5081 -1065 2204 108 3 3 chr9 116699706 116700011 -1162616 - AluSg1 SINE Alu -4 305 1 356 333 63 53 chr9 116700098 116700305 -1162322 + L1M4 LINE L1 5195 5403 -743 907 83 15 8 chr9 116700397 116700529 -1162098 + AluSg SINE Alu 18 150 -160 1886 130 27 0 chr9 116702035 116702334 -1160293 + AluJo SINE Alu 1 307 -5 257 182 40 51 chr9 116702592 116702768 -1159859 + (CACCT)n Simple_repeat Simple_repeat 4 177 0 2510 43 0 3 chr9 116703406 116703706 -1158921 + AluY SINE Alu 1 299 -12 2286 85 0 0 chr9 116704232 116704527 -1158100 + AluSx SINE Alu 1 295 -17 340 238 197 51 chr9 116705399 116705476 -1157151 + L1MEd LINE L1 23 87 -6032 1683 141 29 33 chr9 116705476 116705782 -1156845 + AluJo SINE Alu 1 305 -7 340 238 197 51 chr9 116705782 116706019 -1156608 + L1MEd LINE L1 87 383 -5736 5628 91 31 12 chr9 116706030 116706243 -1156384 + L1PA10 LINE L1 5138 5346 -822 1484 85 0 10 chr9 116706243 116706442 -1156185 + AluSx SINE Alu 1 197 -115 5628 91 31 12 chr9 116706442 116707241 -1155386 + L1PA10 LINE L1 5346 6163 -5 1944 96 0 4 chr9 116710351 116710611 -1152016 - AluSq SINE Alu -8 305 47 301 169 84 12 chr9 116710712 116710795 -1151832 - L1MD3 LINE L1 -14 7981 7893 1780 138 41 7 chr9 116711901 116712191 -1150436 + AluSx SINE Alu 11 310 -2 513 322 75 45 chr9 116712259 116712613 -1150014 + HAL1 LINE L1 1011 1445 -1062 1151 224 102 66 chr9 116712950 116713392 -1149235 + MLT1E3 LTR MaLR 161 618 -6 457 294 98 18 chr9 116713440 116713915 -1148712 + HAL1 LINE L1 1836 2387 -120 1532 160 8 19 chr9 116713915 116714177 -1148450 + AluJb SINE Alu 1 259 -53 1096 132 0 6 chr9 116714189 116714348 -1148279 - AluJb SINE Alu -154 158 1 1234 148 0 0 chr9 116714433 116714622 -1148005 + AluJo SINE Alu 123 311 -1 2231 91 0 3 chr9 116714630 116714949 -1147678 + AluSq SINE Alu 1 318 0 979 180 146 0 chr9 116715797 116716003 -1146624 - MER46A DNA MER2_type 0 236 1 2026 107 3 35 chr9 116716402 116716720 -1145907 - AluSc SINE Alu -1 308 1 2286 104 0 3 chr9 116716958 116717267 -1145360 + AluSx SINE Alu 1 308 -4 1708 146 47 0 chr9 116717277 116717552 -1145075 + AluJb SINE Alu 1 288 -24 300 83 0 0 chr9 116719685 116719733 -1142894 + (CACAG)n Simple_repeat Simple_repeat 2 49 0 1404 140 0 5 chr9 116720872 116721094 -1141533 - AluSg/x SINE Alu -7 305 85 2337 86 0 3 chr9 116721147 116721449 -1141178 - AluY SINE Alu -10 301 1 2300 84 3 10 chr9 116722464 116722775 -1139852 - AluSc SINE Alu 0 309 1 21 71 0 0 chr9 116724265 116724307 -1138320 + GC_rich Low_complexity Low_complexity 1 42 0 774 231 64 0 chr9 116724480 116724714 -1137913 + Charlie5 DNA MER1_type 2376 2624 0 188 293 69 0 chr9 116724738 116724796 -1137831 + MER5A DNA MER1_type 128 189 0 1992 151 100 2 chr9 116724889 116725299 -1137328 + MER31A LTR ERV1 1 450 -35 445 358 89 0 chr9 116725921 116726248 -1136379 - L2 LINE L2 -728 2586 2231 1270 143 18 22 chr9 116726248 116726471 -1136156 + AluJo SINE Alu 85 306 -6 538 287 72 0 chr9 116727403 116727612 -1135015 + REP3 LTR ERV 34 257 -305 811 228 166 47 chr9 116727613 116728016 -1134611 - MLT1D LTR MaLR -21 484 34 189 0 0 0 chr9 116728248 116728269 -1134358 + (GCCTG)n Simple_repeat Simple_repeat 3 23 0 2065 135 3 0 chr9 116728769 116729080 -1133547 - AluSx SINE Alu 0 312 1 185 128 0 26 chr9 116729184 116729223 -1133404 + (CCCCAG)n Simple_repeat Simple_repeat 1 38 0 243 224 224 17 chr9 116729370 116729486 -1133141 + LTR16A LTR ERVL 301 440 -10 288 352 19 0 chr9 116729501 116729609 -1133018 - L2 LINE L2 -1 3312 3203 376 239 18 9 chr9 116729656 116729769 -1132858 - LTR67 LTR ERVL -15 542 429 385 230 48 24 chr9 116729830 116729995 -1132632 + (CCCCAG)n Simple_repeat Simple_repeat 2 170 0 483 220 7 13 chr9 116730661 116730811 -1131816 + (TG)n Simple_repeat Simple_repeat 1 149 0 270 253 11 23 chr9 116730860 116731034 -1131593 + (TG)n Simple_repeat Simple_repeat 1 172 0 183 355 32 11 chr9 116731164 116731257 -1131370 - L2 LINE L2 -210 3062 2968 662 224 107 79 chr9 116731556 116731936 -1130691 - MLT1C LTR MaLR -12 378 23 550 209 23 31 chr9 116732800 116732929 -1129698 + MIR SINE MIR 16 143 -119 370 93 0 53 chr9 116735193 116735268 -1127359 - L1MB3 LINE L1 0 6183 6113 811 143 0 0 chr9 116735272 116735398 -1127229 - AluSg/x SINE Alu -2 307 182 203 237 0 0 chr9 116735533 116735571 -1127056 + C-rich Low_complexity Low_complexity 5 42 0 1579 158 7 37 chr9 116736222 116736520 -1126107 + AluJo SINE Alu 11 299 -13 1921 98 7 18 chr9 116738710 116739053 -1123574 - AluSx SINE Alu 0 353 14 1120 66 0 0 chr9 116739057 116739194 -1123433 - AluSq/x SINE Alu -175 137 1 1502 259 57 19 chr9 116739195 116739758 -1122869 - L1MC3 LINE L1 -331 7454 6871 255 122 0 0 chr9 116739800 116739841 -1122786 - L1MB2 LINE L1 -2 6169 6129 2102 113 0 0 chr9 116739841 116740132 -1122495 - AluSx SINE Alu -21 291 1 1052 89 0 0 chr9 116740132 116740267 -1122360 - AluSq/x SINE Alu -177 135 1 1339 173 53 61 chr9 116740267 116740609 -1122018 - L1MB3 LINE L1 -41 6142 5804 2610 228 76 15 chr9 116740633 116741380 -1121247 + MER21B LTR ERV1 2 794 -69 1995 101 20 10 chr9 116742903 116743201 -1119426 - AluSx SINE Alu -11 301 1 195 267 33 0 chr9 116743488 116743548 -1119079 - MIR3 SINE MIR -51 157 96 192 315 54 22 chr9 116744907 116744999 -1117628 - MIR SINE MIR -117 145 51 22 0 0 0 chr9 116746130 116746152 -1116475 + AT_rich Low_complexity Low_complexity 1 22 0 709 240 61 74 chr9 116747198 116747577 -1115050 - MLT1C LTR MaLR -16 374 1 2030 105 3 7 chr9 116747689 116748026 -1114601 + AluSx SINE Alu 1 336 0 2145 128 0 0 chr9 116749964 116750300 -1112327 + AluSx SINE Alu 1 336 0 200 200 0 0 chr9 116751205 116751240 -1111387 + (TG)n Simple_repeat Simple_repeat 1 35 0 232 291 76 13 chr9 116752082 116752161 -1110466 + MIR SINE MIR 60 143 -65 186 338 52 13 chr9 116753502 116753579 -1109048 + MIR SINE MIR 6 85 -177 874 208 26 56 chr9 116753600 116753869 -1108758 - L1MB5 LINE L1 0 6174 5914 192 152 0 0 chr9 116753903 116753936 -1108691 + T-rich Low_complexity Low_complexity 1 33 0 689 102 0 0 chr9 116753936 116754034 -1108593 - L1PA5 LINE L1 -1 6153 6056 2049 58 94 0 chr9 116754140 116754415 -1108212 - AluY SINE Alu -6 305 5 224 295 171 9 chr9 116755008 116755113 -1107514 - MIR SINE MIR -109 153 32 326 272 116 46 chr9 116755119 116755292 -1107335 + MER91A DNA MER1_type 4 188 -8 279 346 69 0 chr9 116755853 116755983 -1106644 - MIR SINE MIR -37 225 87 510 152 20 20 chr9 116757884 116757983 -1104644 - AluSc SINE Alu -7 302 204 995 62 69 0 chr9 116757990 116758120 -1104507 - AluSq/x SINE Alu -165 148 10 2332 56 0 3 chr9 116758427 116758756 -1103871 + AluY SINE Alu 1 328 0 25 0 0 0 chr9 116759430 116759455 -1103172 + GC_rich Low_complexity Low_complexity 1 25 0 2470 74 0 0 chr9 116760389 116760700 -1101927 - AluSx SINE Alu -1 311 1 664 272 86 14 chr9 116760715 116761005 -1101622 - L1MB3 LINE L1 -33 6150 5840 238 348 76 33 chr9 116764475 116764685 -1097942 - L2 LINE L2 -251 3062 2844 198 143 0 0 chr9 116764802 116764837 -1097790 + (AGGGGG)n Simple_repeat Simple_repeat 4 38 0 180 179 0 0 chr9 116766055 116766094 -1096533 + (CA)n Simple_repeat Simple_repeat 1 39 0 702 202 0 0 chr9 116766115 116766288 -1096339 + (CA)n Simple_repeat Simple_repeat 1 173 0 23 0 0 0 chr9 116767410 116767433 -1095194 + GC_rich Low_complexity Low_complexity 1 23 0 198 143 0 0 chr9 116769639 116769674 -1092953 + (CA)n Simple_repeat Simple_repeat 1 35 0 21 82 0 0 chr9 116770257 116770306 -1092321 + GC_rich Low_complexity Low_complexity 1 49 0 249 33 0 0 chr9 116771361 116771391 -1091236 + (T)n Simple_repeat Simple_repeat 1 30 0 23 0 0 0 chr9 116771491 116771514 -1091113 + GC_rich Low_complexity Low_complexity 1 23 0 191 77 0 51 chr9 116772747 116772786 -1089841 + (AGGGGG)n Simple_repeat Simple_repeat 2 38 0 1596 160 57 4 chr9 116773017 116773298 -1089329 - AluJo SINE Alu -16 296 1 207 0 0 0 chr9 116774908 116774931 -1087696 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 718 304 54 3 chr9 116778553 116778869 -1083758 + L1MB3 LINE L1 5849 6180 -3 1518 256 91 71 chr9 116779373 116780632 -1081995 + L1MD2 LINE L1 4722 5990 -369 239 300 62 0 chr9 116781478 116781558 -1081069 - HsTC2 DNA Tc2 -19 1879 1795 818 75 46 23 chr9 116781724 116781897 -1080730 + GA-rich Low_complexity Low_complexity 2 178 0 215 114 23 0 chr9 116783020 116783064 -1079563 + (TG)n Simple_repeat Simple_repeat 1 45 0 270 0 0 0 chr9 116783147 116783177 -1079450 + (TG)n Simple_repeat Simple_repeat 1 30 0 764 312 75 74 chr9 116783999 116784079 -1078548 + L1ME1 LINE L1 1085 1163 -5367 242 0 61 0 chr9 116784079 116784112 -1078515 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 764 312 75 74 chr9 116784112 116784275 -1078352 + L1ME1 LINE L1 1163 1324 -5206 1861 147 10 10 chr9 116784275 116784575 -1078052 + AluSx SINE Alu 1 300 -12 764 312 75 74 chr9 116784575 116784702 -1077925 + L1ME1 LINE L1 1324 1449 -5081 2240 108 0 9 chr9 116784702 116785018 -1077609 + AluSq SINE Alu 1 313 0 764 312 75 74 chr9 116785018 116785214 -1077413 + L1ME1 LINE L1 1449 1666 -4864 568 329 112 42 chr9 116785241 116785591 -1077036 + L1ME1 LINE L1 2189 2627 -4013 2043 115 14 0 chr9 116785591 116785886 -1076741 + AluSx SINE Alu 1 299 -13 568 329 112 42 chr9 116785886 116785981 -1076646 + L1ME1 LINE L1 2627 2714 -3926 750 251 133 20 chr9 116786080 116786622 -1076005 + L1ME1 LINE L1 3080 3682 -2858 293 100 0 14 chr9 116786622 116786874 -1075753 + AluSq SINE Alu 1 301 -1 331 238 24 0 chr9 116786922 116787006 -1075621 - MER58C DNA MER1_type -3 212 127 921 156 7 0 chr9 116787012 116787166 -1075461 - AluSx SINE Alu -3 309 155 974 176 0 70 chr9 116787166 116787393 -1075234 + MER52A LTR ERV1 3 213 -1542 6279 166 98 9 chr9 116787404 116788668 -1073959 + MER52A LTR ERV1 379 1755 0 972 161 0 0 chr9 116788670 116788819 -1073808 - AluSx SINE Alu -163 149 1 322 243 0 0 chr9 116788839 116788909 -1073718 - MER58C DNA MER1_type -116 99 30 2385 67 0 3 chr9 116788972 116789272 -1073355 + AluY SINE Alu 1 299 -12 1820 149 7 7 chr9 116789316 116789605 -1073022 - AluSx SINE Alu -23 289 1 575 308 21 7 chr9 116789619 116789898 -1072729 + L1ME1 LINE L1 3779 4061 -2479 270 0 0 0 chr9 116789969 116789999 -1072628 + (TTCA)n Simple_repeat Simple_repeat 2 31 0 2117 113 0 0 chr9 116789999 116790282 -1072345 - AluSx SINE Alu -29 283 1 697 306 20 23 chr9 116790820 116791173 -1071454 + L1ME1 LINE L1 4138 4489 -2051 417 292 126 67 chr9 116791174 116791259 -1071368 + L1ME1 LINE L1 4520 4599 -1941 1935 133 3 11 chr9 116791259 116791396 -1071231 + AluSx SINE Alu 1 137 -176 1869 108 54 7 chr9 116791396 116791673 -1070954 + AluSg SINE Alu 3 292 -18 1935 133 3 11 chr9 116791673 116791850 -1070777 + AluSx SINE Alu 137 313 0 417 292 126 67 chr9 116791850 116792005 -1070622 + L1ME1 LINE L1 4599 4743 -1797 2223 84 3 22 chr9 116792005 116792316 -1070311 + AluSx SINE Alu 1 305 -7 417 292 126 67 chr9 116792316 116792539 -1070088 + L1ME1 LINE L1 4743 4951 -1589 423 0 0 0 chr9 116792539 116792586 -1070041 + (TG)n Simple_repeat Simple_repeat 1 47 0 417 292 126 67 chr9 116792586 116792959 -1069668 + L1ME1 LINE L1 4951 5409 -1131 2332 244 187 24 chr9 116793015 116793456 -1069171 + L1MC4 LINE L1 6499 6867 -1175 2134 117 0 0 chr9 116793456 116793754 -1068873 + AluSx SINE Alu 1 298 -14 2332 244 187 24 chr9 116793754 116794559 -1068068 + L1MC4 LINE L1 6867 8039 -3 467 283 91 27 chr9 116794581 116794934 -1067693 + L1ME1 LINE L1 5440 5836 -722 621 309 46 90 chr9 116794960 116795417 -1067210 + L1MEc LINE L1 939 1375 -5188 433 281 98 39 chr9 116795444 116795800 -1066827 + L1MEc LINE L1 1286 1662 -4722 1219 101 30 0 chr9 116795874 116796042 -1066585 - AluSg/x SINE Alu -16 294 122 343 214 201 38 chr9 116796042 116796151 -1066476 - L1ME LINE L1 -372 5794 5704 2209 113 0 3 chr9 116796151 116796453 -1066174 - AluSx SINE Alu -11 301 1 343 214 201 38 chr9 116796453 116796502 -1066125 - L1ME LINE L1 -462 5704 5610 1059 228 157 52 chr9 116796505 116796898 -1065729 + L1ME1 LINE L1 6043 6494 -66 1828 169 0 13 chr9 116796898 116797205 -1065422 + AluJb SINE Alu 1 303 -9 1059 228 157 52 chr9 116797205 116797277 -1065350 + L1ME1 LINE L1 6494 6557 -3 794 289 106 14 chr9 116797335 116797844 -1064783 + L1MEc LINE L1 2086 2641 -3922 1041 272 78 53 chr9 116797976 116798708 -1063919 + L1MEc LINE L1 3719 4557 -1825 2335 78 0 0 chr9 116798708 116799001 -1063626 + AluY SINE Alu 1 293 -18 1041 272 78 53 chr9 116799001 116799125 -1063502 + L1MEc LINE L1 4557 4676 -1706 803 190 24 24 chr9 116799120 116799322 -1063305 + L1MB8 LINE L1 5616 5820 -358 * 1754 165 13 25 chr9 116799322 116799638 -1062989 + AluJb SINE Alu 1 312 0 622 57 14 64 chr9 116799638 116799778 -1062849 + (GGAA)n Simple_repeat Simple_repeat 1 133 0 1984 133 19 3 chr9 116799785 116800093 -1062534 + AluSq SINE Alu 1 313 0 1137 229 75 15 chr9 116800093 116800425 -1062202 + L1MB8 LINE L1 5822 6173 -5 1133 285 68 8 chr9 116800475 116800645 -1061982 + L1M4 LINE L1 4498 4656 -1490 2058 111 24 0 chr9 116800645 116800933 -1061694 - AluSx SINE Alu -17 295 1 1133 285 68 8 chr9 116800933 116801273 -1061354 + L1M4 LINE L1 4656 5047 -1099 753 142 0 0 chr9 116801275 116801444 -1061183 + (CA)n Simple_repeat Simple_repeat 2 170 0 570 179 0 0 chr9 116801474 116801642 -1060985 + (CA)n Simple_repeat Simple_repeat 1 168 0 512 283 17 11 chr9 116801703 116801880 -1060747 + L1M4 LINE L1 5069 5246 -900 319 285 91 48 chr9 116807015 116807180 -1055447 - L1MEc LINE L1 -4146 2250 2079 1047 259 97 15 chr9 116807411 116807866 -1054761 - L1MB3 LINE L1 -28 6155 5664 362 319 108 36 chr9 116807866 116808032 -1054595 - L1MC4 LINE L1 -412 7630 7453 336 218 179 26 chr9 116808892 116809048 -1053579 - MLT1C LTR MaLR -276 191 12 1304 228 66 53 chr9 116812542 116812703 -1049924 - L1MB3 LINE L1 -975 5171 5014 2055 104 14 4 chr9 116812703 116813005 -1049622 - AluSp SINE Alu 0 305 1 186 43 0 0 chr9 116813005 116813028 -1049599 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 1694 176 3 3 chr9 116813028 116813312 -1049315 - AluSx SINE Alu -28 284 1 2276 103 0 0 chr9 116813318 116813620 -1049007 - AluSq SINE Alu -11 302 1 1304 228 66 53 chr9 116813620 116813996 -1048631 - L1MB3 LINE L1 -1136 5010 4617 * 2774 238 85 19 chr9 116813978 116814009 -1048618 - L1MB3 LINE L1 -2754 3392 3365 2232 118 0 0 chr9 116814009 116814313 -1048314 - AluSg SINE Alu -6 304 1 1974 121 3 35 chr9 116814313 116814627 -1048000 - AluSx SINE Alu -7 305 2 2774 238 85 19 chr9 116814627 116815038 -1047589 - L1MB3 LINE L1 -2781 3365 2983 2291 77 3 13 chr9 116815038 116815350 -1047277 - AluSg1 SINE Alu 0 309 1 2774 238 85 19 chr9 116815350 116815984 -1046643 - L1MB3 LINE L1 -3163 2983 2242 320 0 25 0 chr9 116815987 116816027 -1046600 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 1913 102 7 14 chr9 116816029 116816312 -1046315 - AluSq SINE Alu -32 281 1 226 214 0 0 chr9 116816315 116816371 -1046256 + L1MDa LINE L1 2589 2644 -3896 985 181 10 16 chr9 116818802 116818995 -1043632 - AluJo SINE Alu -114 198 7 1981 139 7 0 chr9 116819111 116819414 -1043213 + AluSx SINE Alu 1 305 -7 367 388 106 4 chr9 116819424 116819697 -1042930 - L1ME1 LINE L1 -40 6126 5826 486 282 13 43 chr9 116819718 116819952 -1042675 - L1ME1 LINE L1 -615 5549 5323 490 276 32 0 chr9 116820728 116820884 -1041743 + LTR37B LTR ERV1 197 357 -111 1270 224 45 14 chr9 116820902 116821260 -1041367 + L1MB3 LINE L1 5814 6182 -1 2153 51 15 7 chr9 116821272 116821568 -1041059 + AluY SINE Alu 9 306 0 1454 137 47 93 chr9 116821570 116821891 -1040736 + AluJo SINE Alu 1 306 -6 409 304 52 70 chr9 116821920 116822188 -1040439 + L1M4 LINE L1 5105 5360 -786 1085 44 0 30 chr9 116822474 116822609 -1040018 - AluSg SINE Alu -179 131 1 318 305 76 0 chr9 116822978 116823083 -1039544 - MIR SINE MIR -58 204 92 1238 95 24 0 chr9 116824932 116825101 -1037526 + AluSp SINE Alu 111 283 -30 189 0 0 0 chr9 116829528 116829549 -1033078 + (TTAAA)n Simple_repeat Simple_repeat 3 23 0 1099 210 32 0 chr9 116832410 116832629 -1029998 + L1PA16 LINE L1 5941 6166 0 2063 105 30 20 chr9 116835708 116835985 -1026642 + AluSx SINE Alu 1 283 -29 570 15 0 0 chr9 116835985 116836052 -1026575 + (CAGGA)n Simple_repeat Simple_repeat 4 70 0 2063 105 30 20 chr9 116836052 116836078 -1026549 + AluSx SINE Alu 283 307 -5 364 279 105 28 chr9 116836254 116836501 -1026126 + LTR37B LTR ERV1 196 461 -7 1744 178 3 7 chr9 116836502 116836806 -1025821 + AluJb SINE Alu 1 303 -9 2236 100 3 3 chr9 116837470 116837781 -1024846 + AluSx SINE Alu 1 311 -1 1893 172 0 0 chr9 116837875 116838177 -1024450 + AluJo SINE Alu 1 302 -10 4017 201 39 41 chr9 116838188 116839072 -1023555 + L1MB8 LINE L1 4256 5140 -1038 1766 139 15 59 chr9 116839072 116839206 -1023421 + AluJb SINE Alu 1 139 -173 2079 147 0 0 chr9 116839206 116839518 -1023109 + AluSx SINE Alu 1 312 0 1766 139 15 59 chr9 116839518 116839707 -1022920 + AluJb SINE Alu 139 310 -2 4017 201 39 41 chr9 116839707 116839780 -1022847 + L1MB8 LINE L1 5140 5212 -966 2153 125 6 0 chr9 116839780 116840091 -1022536 + AluSq SINE Alu 1 313 0 4017 201 39 41 chr9 116840091 116840837 -1021790 + L1MB8 LINE L1 5212 5959 -219 2044 88 3 53 chr9 116840837 116841155 -1021472 + AluSp SINE Alu 1 302 -11 4017 201 39 41 chr9 116841155 116841295 -1021332 + L1MB8 LINE L1 5959 6098 -80 2215 175 45 92 chr9 116841296 116841425 -1021202 - MER7C DNA MER2_type -2431 597 463 2187 78 10 0 chr9 116841425 116841719 -1020908 + AluSc SINE Alu 1 297 -12 2215 175 45 92 chr9 116841719 116842084 -1020543 - MER7C DNA MER2_type -2565 463 135 1654 160 3 16 chr9 116842084 116842391 -1020236 + AluSq SINE Alu 1 303 -10 2215 175 45 92 chr9 116842391 116842512 -1020115 - MER7C DNA MER2_type -2893 135 10 415 152 43 22 chr9 116842513 116842605 -1020022 + L1MB7 LINE L1 6091 6184 0 598 152 141 0 chr9 116842606 116842790 -1019837 + L1MDa LINE L1 2384 2593 -3947 1449 128 64 4 chr9 116842792 116843026 -1019601 - AluSq SINE Alu -15 298 51 28 48 0 0 chr9 116843154 116843196 -1019431 + GC_rich Low_complexity Low_complexity 1 42 0 935 285 53 25 chr9 116843851 116844247 -1018380 + MLT1C LTR MaLR 60 466 -1 195 303 38 52 chr9 116844549 116844690 -1017937 - MIR SINE MIR -69 139 12 24 32 0 0 chr9 116846673 116846704 -1015923 + AT_rich Low_complexity Low_complexity 1 31 0 55 92 0 0 chr9 116851807 116851960 -1010667 + GC_rich Low_complexity Low_complexity 1 153 0 22 0 0 0 chr9 116852053 116852075 -1010552 + GC_rich Low_complexity Low_complexity 1 22 0 24 77 0 0 chr9 116852090 116852142 -1010485 + GC_rich Low_complexity Low_complexity 1 52 0 36 53 0 0 chr9 116852203 116852260 -1010367 + GC_rich Low_complexity Low_complexity 1 57 0 25 0 0 0 chr9 116852271 116852296 -1010331 + GC_rich Low_complexity Low_complexity 1 25 0 27 62 0 0 chr9 116852598 116852646 -1009981 + GC_rich Low_complexity Low_complexity 1 48 0 234 0 0 0 chr9 116853393 116853419 -1009208 + (CA)n Simple_repeat Simple_repeat 2 27 0 267 271 85 34 chr9 116854015 116854099 -1008528 - MIR SINE MIR -25 237 144 2331 97 0 0 chr9 116854099 116854408 -1008219 - AluSx SINE Alu -3 309 1 267 271 85 34 chr9 116854408 116854441 -1008186 - MIR SINE MIR -118 144 114 479 294 50 56 chr9 116854935 116855444 -1007183 + L2 LINE L2 2571 3073 -240 204 232 54 18 chr9 116855524 116855580 -1007047 + L2 LINE L2 3189 3246 -26 229 227 18 49 chr9 116856511 116856674 -1005953 + G-rich Low_complexity Low_complexity 4 161 0 204 125 0 0 chr9 116856919 116856951 -1005676 + (T)n Simple_repeat Simple_repeat 1 32 0 419 240 10 0 chr9 116856957 116857057 -1005570 - L1MB5 LINE L1 0 6174 6074 228 264 90 58 chr9 116858867 116859022 -1003605 + L2 LINE L2 2930 3089 -183 2165 67 13 24 chr9 116859853 116860151 -1002476 - AluY SINE Alu -16 295 1 1156 30 0 0 chr9 116860153 116860285 -1002342 - AluY SINE Alu -179 132 1 2330 83 0 0 chr9 116863227 116863529 -999098 - AluSx SINE Alu -10 302 1 24 0 0 0 chr9 116864089 116864113 -998514 + GC_rich Low_complexity Low_complexity 1 24 0 285 268 16 16 chr9 116866019 116866142 -996485 + C-rich Low_complexity Low_complexity 2 124 0 619 110 39 71 chr9 116869229 116869356 -993271 + AluJb SINE Alu 190 312 0 227 318 35 0 chr9 116869454 116869539 -993088 - MER3 DNA MER1_type -113 96 9 1545 170 16 39 chr9 116870107 116870413 -992214 - AluJo SINE Alu -13 299 1 720 102 10 0 chr9 116870608 116870706 -991921 - AluJ SINE Alu -13 299 201 * 814 180 0 0 chr9 116870699 116870827 -991800 - AluJ SINE Alu -153 159 32 2110 124 0 0 chr9 116870992 116871291 -991336 + AluSq SINE Alu 1 299 -14 21 0 0 0 chr9 116873887 116873908 -988719 + GC_rich Low_complexity Low_complexity 1 21 0 309 347 69 0 chr9 116874576 116874720 -987907 + MIR SINE MIR 28 181 -81 24 32 0 0 chr9 116875341 116875372 -987255 + GC_rich Low_complexity Low_complexity 1 31 0 22 70 0 0 chr9 116875482 116875525 -987102 + GC_rich Low_complexity Low_complexity 1 43 0 207 0 0 0 chr9 116875853 116875876 -986751 + (CGTG)n Simple_repeat Simple_repeat 3 25 0 23 0 0 0 chr9 116876434 116876457 -986170 + GC_rich Low_complexity Low_complexity 1 23 0 782 153 8 8 chr9 116876962 116877086 -985541 + FLAM_C SINE Alu 9 132 -11 337 205 162 34 chr9 116877188 116877305 -985322 + AluJb SINE Alu 1 132 -170 412 183 49 0 chr9 116878087 116878169 -984458 - MER69 DNA AcHobo 0 2526 2441 2177 82 6 32 chr9 116878265 116878581 -984046 + AluY SINE Alu 1 308 -3 364 200 83 83 chr9 116878659 116878779 -983848 + L1ME4a LINE L1 5974 6093 -28 227 328 49 25 chr9 116880870 116880992 -981635 + MLT1H1 LTR MaLR 67 191 -364 216 97 0 0 chr9 116881075 116881106 -981521 + (GGGA)n Simple_repeat Simple_repeat 1 31 0 1361 152 23 15 chr9 116881112 116881375 -981252 + MLT1B LTR MaLR 109 373 -17 1185 110 0 6 chr9 116882029 116882274 -980353 + (TTGG)n Simple_repeat Simple_repeat 1 422 0 1185 83 0 0 chr9 116882274 116882454 -980173 + (TTGG)n Simple_repeat Simple_repeat 1 180 0 486 197 0 0 chr9 116884734 116884861 -977766 + GA-rich Low_complexity Low_complexity 1 127 0 682 311 19 26 chr9 116885122 116885389 -977238 - L1ME4a LINE L1 -187 5934 5670 693 223 95 0 chr9 116885834 116886045 -976582 + L1MB3 LINE L1 5953 6183 0 2258 102 0 0 chr9 116886574 116886890 -975737 - AluSq SINE Alu 0 316 1 888 178 71 0 chr9 116887007 116887232 -975395 - L1MB3 LINE L1 0 6183 5943 245 324 104 46 chr9 116887715 116887956 -974671 + L2 LINE L2 2923 3177 -95 21 82 0 0 chr9 116889633 116889682 -972945 + GC_rich Low_complexity Low_complexity 1 49 0 312 351 67 0 chr9 116890903 116891037 -971590 + MIR SINE MIR 28 170 -92 23 33 0 0 chr9 116891660 116891690 -970937 + GC_rich Low_complexity Low_complexity 1 30 0 198 0 0 0 chr9 116892158 116892180 -970447 + (CGTG)n Simple_repeat Simple_repeat 4 25 0 223 200 13 13 chr9 116892604 116892679 -969948 + C-rich Low_complexity Low_complexity 4 78 0 204 117 0 108 chr9 116892690 116892801 -969826 + (CCCCG)n Simple_repeat Simple_repeat 3 101 0 558 161 0 0 chr9 116893126 116893238 -969389 + GA-rich Low_complexity Low_complexity 1 112 0 1676 164 9 41 chr9 116893968 116894285 -968342 + AluJb SINE Alu 1 307 -5 2284 85 0 0 chr9 116894297 116894591 -968036 - AluSx SINE Alu -18 294 1 542 244 26 0 chr9 116894591 116894825 -967802 - L1MC1 LINE L1 -8 6325 5961 504 133 0 0 chr9 116897742 116897825 -964802 + (TCCCC)n Simple_repeat Simple_repeat 1 83 0 2348 86 3 6 chr9 116898517 116898831 -963796 - AluSp SINE Alu 0 313 1 1768 170 10 19 chr9 116898860 116899171 -963456 + AluJo SINE Alu 1 308 -4 2125 98 0 0 chr9 116899202 116899477 -963150 + AluSx SINE Alu 1 275 -37 516 32 0 0 chr9 116899488 116899550 -963077 + (AATAG)n Simple_repeat Simple_repeat 2 63 0 770 224 30 5 chr9 116899559 116899805 -962822 + L1MB8 LINE L1 5566 5822 -362 1547 141 16 4 chr9 116899806 116899919 -962708 - AluJo SINE Alu -60 252 142 2030 131 3 3 chr9 116899919 116900225 -962402 - AluSx SINE Alu -6 306 1 1547 141 16 4 chr9 116900225 116900360 -962267 - AluJo SINE Alu -170 142 1 328 167 0 0 chr9 116900361 116900427 -962200 - MLT2B1 LTR ERVL -453 67 2 717 260 146 0 chr9 116900428 116900709 -961918 - L1MB3 LINE L1 -40 6143 5822 812 189 0 7 chr9 116900709 116900857 -961770 + L1MB8 LINE L1 6027 6173 -5 2101 120 20 0 chr9 116900874 116901175 -961452 + AluSx SINE Alu 1 307 -5 21 0 0 0 chr9 116901178 116901199 -961428 + AT_rich Low_complexity Low_complexity 1 21 0 206 356 85 0 chr9 116902865 116902983 -959644 + MIR3 SINE MIR 58 185 -23 196 308 0 0 chr9 116903621 116903673 -958954 + MIR SINE MIR 93 144 -118 264 256 179 17 chr9 116905462 116905579 -957048 + MIR SINE MIR 79 214 -48 217 182 15 15 chr9 116905980 116906046 -956581 + (TG)n Simple_repeat Simple_repeat 1 66 0 381 288 37 28 chr9 116907417 116907578 -955049 - MIR3 SINE MIR -36 172 29 1284 95 2 2 chr9 116909846 116910493 -952134 + (TGAG)n Simple_repeat Simple_repeat 1 647 0 233 382 6 6 chr9 116911757 116911927 -950700 + (CTGGGG)n Simple_repeat Simple_repeat 6 175 0 225 351 0 0 chr9 116912794 116912871 -949756 - MIR SINE MIR -117 145 69 245 357 140 6 chr9 116913137 116913294 -949333 + MIR SINE MIR 63 240 -22 300 256 58 44 chr9 116913429 116913566 -949061 - L1MC4a LINE L1 -1691 6117 5979 213 263 0 95 chr9 116913570 116913760 -948867 + CT-rich Low_complexity Low_complexity 1 172 0 293 249 0 83 chr9 116913792 116914065 -948562 + CT-rich Low_complexity Low_complexity 1 250 0 256 303 18 42 chr9 116914077 116914242 -948385 + C-rich Low_complexity Low_complexity 1 161 0 228 338 96 7 chr9 116914586 116914722 -947905 + L1ME LINE L1 5766 5913 -208 1366 262 41 45 chr9 116915074 116915437 -947190 + L1MB7 LINE L1 5649 6011 -173 2127 113 3 0 chr9 116915437 116915730 -946897 - AluSx SINE Alu -17 295 2 1366 262 41 45 chr9 116915730 116915904 -946723 + L1MB7 LINE L1 6011 6184 0 210 71 0 0 chr9 116918545 116918573 -944054 + (ATTG)n Simple_repeat Simple_repeat 4 31 0 483 205 30 6 chr9 116920834 116921000 -941627 + (TG)n Simple_repeat Simple_repeat 1 170 0 207 156 0 0 chr9 116921212 116921244 -941383 + C-rich Low_complexity Low_complexity 2 33 0 1675 184 7 0 chr9 116921244 116921538 -941089 - AluJb SINE Alu -11 301 6 369 288 68 30 chr9 116921729 116921861 -940766 + L2 LINE L2 3173 3309 -4 1944 106 64 11 chr9 116921864 116921981 -940646 + AluSx SINE Alu 1 110 -202 2446 54 0 3 chr9 116921981 116922277 -940350 + AluY SINE Alu 1 295 -16 1944 106 64 11 chr9 116922277 116922442 -940185 + AluSx SINE Alu 110 298 -14 468 138 11 0 chr9 116922459 116922546 -940081 - L1MB7 LINE L1 -2 6182 6095 1842 179 35 8 chr9 116922553 116922928 -939699 - L1MB3 LINE L1 -2 6181 5797 352 194 146 35 chr9 116922929 116923073 -939554 - L1MEc LINE L1 -4103 2293 2134 1252 198 0 4 chr9 116923079 116923306 -939321 - AluJb SINE Alu 0 312 87 2101 132 3 3 chr9 116923321 116923662 -938965 - AluSx SINE Alu 0 312 1 2508 284 88 72 chr9 116923662 116923805 -938822 - L1MEc LINE L1 -4266 2130 1991 2274 92 7 0 chr9 116923805 116924100 -938527 + AluSx SINE Alu 1 297 -15 2412 71 3 0 chr9 116924102 116924410 -938217 + AluY SINE Alu 1 309 -2 2508 284 88 72 chr9 116924410 116924615 -938012 - L1MEc LINE L1 -4405 1991 1791 1715 199 6 6 chr9 116924615 116924927 -937700 - AluJb SINE Alu 0 312 1 2508 284 88 72 chr9 116924927 116925135 -937492 - L1MEc LINE L1 -4605 1791 1588 1879 98 0 0 chr9 116925135 116925379 -937248 + AluSx SINE Alu 38 281 -31 2508 284 88 72 chr9 116925379 116925640 -936987 - L1MEc LINE L1 -4808 1588 1333 2110 98 0 21 chr9 116925640 116925957 -936670 - AluSc SINE Alu 0 311 1 2508 284 88 72 chr9 116925957 116925985 -936642 - L1MEc LINE L1 -5063 1333 1307 1715 156 34 17 chr9 116925985 116926280 -936347 - AluJo SINE Alu -12 300 1 2508 284 88 72 chr9 116926280 116926512 -936115 - L1MEc LINE L1 -5089 1307 1080 2339 87 0 3 chr9 116926512 116926822 -935805 + AluSc SINE Alu 1 309 0 2508 284 88 72 chr9 116926822 116927052 -935575 - L1MEc LINE L1 -5316 1080 855 2401 79 0 0 chr9 116927052 116927356 -935271 - AluY SINE Alu -6 305 2 2508 284 88 72 chr9 116927356 116927406 -935221 - L1MEc LINE L1 -5541 855 807 2530 37 0 7 chr9 116927406 116927704 -934923 - AluY SINE Alu -15 296 1 2508 284 88 72 chr9 116927704 116928392 -934235 - L1MEc LINE L1 -5589 807 36 219 250 54 11 chr9 116930116 116930208 -932419 + MIR SINE MIR 50 145 -117 329 343 80 29 chr9 116930538 116930949 -931678 + L2 LINE L2 2819 3250 -63 252 288 55 62 chr9 116931602 116931748 -930879 + MIR3 SINE MIR 2 146 -62 918 208 131 81 chr9 116932751 116933232 -929395 + MLT1D LTR MaLR 1 505 0 261 0 0 0 chr9 116935897 116935926 -926701 + (T)n Simple_repeat Simple_repeat 1 29 0 1902 88 0 0 chr9 116935928 116936167 -926460 - AluSq SINE Alu -74 239 1 188 260 96 0 chr9 116938578 116938651 -923976 - MIR SINE MIR -57 151 72 29 0 0 0 chr9 116938965 116938994 -923633 + AT_rich Low_complexity Low_complexity 1 29 0 2451 80 0 0 chr9 116940850 116941161 -921466 + AluY SINE Alu 1 311 0 664 93 9 9 chr9 116941196 116941303 -921324 + (GGAA)n Simple_repeat Simple_repeat 1 107 0 435 135 11 11 chr9 116941412 116941501 -921126 + GA-rich Low_complexity Low_complexity 2 90 0 1092 220 64 102 chr9 116942782 116943264 -919363 - MLT1C LTR MaLR -3 464 1 2280 91 10 7 chr9 116943369 116943678 -918949 + AluSq SINE Alu 1 310 -3 180 0 0 0 chr9 116943715 116943735 -918892 + (TTTTTG)n Simple_repeat Simple_repeat 1 20 0 2372 71 0 0 chr9 116943938 116944232 -918395 + AluSc SINE Alu 1 294 -15 232 389 11 0 chr9 116946376 116946466 -916161 - MIR SINE MIR -63 199 109 186 260 0 96 chr9 116946920 116947024 -915603 + MER5B DNA MER1_type 73 166 -12 1246 178 64 32 chr9 116947674 116947955 -914672 + AluJb SINE Alu 1 290 -22 1392 191 3 50 chr9 116947992 116948312 -914315 + AluJo SINE Alu 1 305 -7 2015 88 0 53 chr9 116948317 116948635 -913992 + AluSg SINE Alu 1 301 -9 238 151 57 0 chr9 116948761 116948814 -913813 + L1ME4a LINE L1 6062 6117 -4 189 0 0 0 chr9 116949759 116949780 -912847 + (CCCCCT)n Simple_repeat Simple_repeat 1 21 0 308 151 38 0 chr9 116950651 116950704 -911923 - L1MB5 LINE L1 -1 6173 6119 286 242 17 108 chr9 116950957 116951077 -911550 - MIR3 SINE MIR -87 121 13 21 71 0 0 chr9 116953514 116953556 -909071 + GC_rich Low_complexity Low_complexity 1 42 0 390 176 40 8 chr9 116954409 116954534 -908093 + C-rich Low_complexity Low_complexity 5 133 0 2134 98 18 0 chr9 116954658 116954944 -907683 + AluSq SINE Alu 1 291 -22 266 262 48 0 chr9 116955431 116955515 -907112 - MIR SINE MIR -129 133 46 276 303 20 30 chr9 116957676 116957775 -904852 - MIR SINE MIR -80 182 85 23 0 0 0 chr9 116958943 116958966 -903661 + GC_rich Low_complexity Low_complexity 1 23 0 221 158 35 18 chr9 116962867 116962924 -899703 + (CGGGG)n Simple_repeat Simple_repeat 1 58 0 279 224 0 24 chr9 116964826 116964911 -897716 + C-rich Low_complexity Low_complexity 3 85 0 354 80 0 0 chr9 116967028 116967078 -895549 + (CA)n Simple_repeat Simple_repeat 1 50 0 4431 155 84 14 chr9 116969342 116970186 -892441 - MER4D LTR ERV1 0 903 1 235 286 10 31 chr9 116970312 116970410 -892217 + MER5A DNA MER1_type 45 140 -49 238 289 21 41 chr9 116973525 116973622 -889005 - L2 LINE L2 -60 3253 3159 1350 154 199 0 chr9 116973632 116973878 -888749 + AluJb SINE Alu 1 295 -7 638 226 8 0 chr9 116974071 116974195 -888432 - FLAM_A SINE Alu -8 125 1 182 305 136 8 chr9 116974270 116974388 -888239 - L2 LINE L2 -515 2799 2667 619 296 43 32 chr9 116974847 116975100 -887527 + LTR37B LTR ERV1 1 256 -212 475 299 52 13 chr9 116977842 116977996 -884631 - MIR SINE MIR -66 196 37 213 346 37 0 chr9 116978062 116978143 -884484 - L2 LINE L2 -218 3054 2971 3554 198 94 24 chr9 116978666 116980113 -882514 - Tigger2 DNA MER2_type 0 2718 1134 1701 161 55 0 chr9 116980119 116980411 -882216 - AluJb SINE Alu 0 312 5 1569 163 33 15 chr9 116980420 116980751 -881876 - Tigger2 DNA MER2_type -2373 345 9 898 243 10 15 chr9 116980819 116981025 -881602 + MER6B DNA MER2_type 5 209 -1 195 227 0 0 chr9 116981129 116981195 -881432 + GA-rich Low_complexity Low_complexity 1 66 0 2254 77 0 0 chr9 116982783 116983068 -879559 - AluSc SINE Alu -24 285 1 346 297 144 18 chr9 116984748 116984977 -877650 + L1MC5 LINE L1 7101 7358 -603 1512 124 0 17 chr9 116985138 116985372 -877255 - AluJb SINE Alu -80 232 3 265 316 22 22 chr9 116985455 116985591 -877036 + L1MC5 LINE L1 7790 7925 -36 204 158 0 0 chr9 116986668 116986706 -875921 + (CA)n Simple_repeat Simple_repeat 1 38 0 242 263 81 0 chr9 116988437 116988536 -874091 - L1ME3A LINE L1 -5 6165 6059 193 133 67 0 chr9 116991461 116991506 -871121 + L2 LINE L2 3225 3272 -41 1463 189 11 4 chr9 116992100 116992364 -870263 + AluJb SINE Alu 43 308 -4 184 289 92 13 chr9 116992577 116992653 -869974 - L2 LINE L2 -41 3231 3150 1536 209 10 0 chr9 116992751 116993047 -869580 + AluJb SINE Alu 14 312 0 281 252 29 19 chr9 116997583 116997686 -864941 - L1ME2 LINE L1 -9 6155 6052 802 299 167 31 chr9 116998255 116998777 -863850 - MLT1E LTR MaLR 0 593 1 510 236 20 27 chr9 116999034 116999182 -863445 - MLT1H LTR MaLR -5 544 398 274 231 209 0 chr9 116999312 116999403 -863224 - MLT1H1 LTR MaLR -411 144 35 590 85 43 0 chr9 116999736 116999830 -862797 + AluSg/x SINE Alu 215 312 0 21 0 0 0 chr9 117002221 117002242 -860385 + AT_rich Low_complexity Low_complexity 1 21 0 547 162 0 57 chr9 117203328 117203433 -659194 - AluJb SINE Alu -104 208 110 1167 135 116 14 chr9 117204494 117204709 -657918 + AluJo SINE Alu 49 285 -27 363 324 74 17 chr9 117204713 117204933 -657694 - L1M4 LINE L1 -734 5450 5219 336 308 11 43 chr9 117208613 117208798 -653829 + C-rich Low_complexity Low_complexity 1 179 0 333 308 11 38 chr9 117208964 117209149 -653478 + C-rich Low_complexity Low_complexity 1 180 0 290 250 24 12 chr9 117209329 117209413 -653214 + HAL1 LINE L1 1744 1828 -679 1114 89 0 54 chr9 117209434 117209602 -653025 - AluY SINE Alu -152 159 1 392 234 23 23 chr9 117209602 117209730 -652897 - HAL1 LINE L1 -1260 1247 1120 1298 241 70 4 chr9 117209987 117210074 -652553 - L1MC/D LINE L1 -601 5563 5483 2202 116 0 0 chr9 117210074 117210376 -652251 - AluSx SINE Alu -10 302 1 1298 241 70 4 chr9 117210376 117211068 -651559 - L1MC/D LINE L1 -681 5483 4920 1954 104 28 0 chr9 117211072 117211361 -651266 + THE1B LTR MaLR 1 297 -67 2260 105 0 0 chr9 117211362 117211658 -650969 - AluSg SINE Alu -14 296 1 2249 84 0 0 chr9 117211662 117211947 -650680 - AluSx SINE Alu -10 302 18 647 110 11 0 chr9 117212600 117212691 -649936 - AluSg1 SINE Alu -217 92 1 1794 284 107 30 chr9 117212714 117213712 -648915 + HAL1 LINE L1 1427 2501 -6 241 330 153 0 chr9 117213792 117213910 -648717 + MIR3 SINE MIR 42 177 -31 2150 80 21 0 chr9 117214472 117214759 -647868 - AluSc SINE Alu -16 293 1 1974 71 97 0 chr9 117218698 117218967 -643660 + AluY SINE Alu 1 295 -16 235 271 43 0 chr9 117218985 117219055 -643572 + HsTC2 DNA Tc2 1799 1871 -27 1960 236 25 0 chr9 117219104 117219582 -643045 + L1MC1 LINE L1 5492 5981 -352 269 231 42 0 chr9 117219803 117219882 -642745 + L1MD3 LINE L1 7907 8040 -2 2110 113 3 0 chr9 117219887 117220189 -642438 - AluSx SINE Alu -9 303 1 2189 103 0 7 chr9 117220472 117220774 -641853 - AluSx SINE Alu -12 300 1 310 271 35 111 chr9 117220781 117220950 -641677 - L1ME4a LINE L1 -174 5947 5794 1978 105 56 7 chr9 117220950 117221235 -641392 - AluSg SINE Alu -11 299 1 310 271 35 111 chr9 117221235 117221264 -641363 - L1ME4a LINE L1 -327 5794 5764 362 252 99 0 chr9 117221361 117221472 -641155 - MER99 DNA DNA -705 123 2 199 337 82 0 chr9 117223768 117223866 -638761 + L2 LINE L2 2678 2783 -531 2850 267 75 39 chr9 117226318 117227111 -635516 + L1MDb LINE L1 817 1580 -4826 1671 189 7 10 chr9 117227111 117227412 -635215 - AluJo SINE Alu -12 300 1 2850 267 75 39 chr9 117227412 117228130 -634497 + L1MDb LINE L1 1580 2340 -4066 1034 177 0 6 chr9 117228130 117228305 -634322 + FAM SINE Alu 1 174 -1 2850 267 75 39 chr9 117228305 117228513 -634114 + L1MDb LINE L1 2340 2539 -3867 382 152 152 9 chr9 117228599 117228704 -633923 + MLT1C LTR MaLR 17 136 -331 202 321 232 10 chr9 117228769 117229071 -633556 - L2 LINE L2 -60 3253 2885 393 134 29 119 chr9 117229590 117229977 -632650 + (GGCTG)n Simple_repeat Simple_repeat 1 352 0 245 293 51 25 chr9 117231541 117231698 -630929 + C-rich Low_complexity Low_complexity 5 165 0 2364 63 3 3 chr9 117232461 117232760 -629867 - AluY SINE Alu -12 299 1 1831 98 113 4 chr9 117233149 117233424 -629203 - AluSx SINE Alu -7 305 1 521 200 0 0 chr9 117233449 117233534 -629093 + AluS SINE Alu 3 87 -226 1645 80 9 5 chr9 117233634 117233887 -628740 + AluSp SINE Alu 61 314 0 25 0 0 0 chr9 117234593 117234618 -628009 + AT_rich Low_complexity Low_complexity 1 25 0 2211 105 0 3 chr9 117234666 117234971 -627656 - AluSg SINE Alu -6 304 1 268 262 122 0 chr9 117236000 117236107 -626520 - L2 LINE L2 -851 2463 2344 360 228 0 4 chr9 117236252 117236516 -626111 + (CA)n Simple_repeat Simple_repeat 1 262 0 364 390 57 0 chr9 117239040 117239217 -623410 + L1M4 LINE L1 4743 4929 -1217 232 243 0 14 chr9 117239827 117239897 -622730 + G-rich Low_complexity Low_complexity 6 74 0 503 279 157 50 chr9 117239940 117240220 -622407 + L1MC5 LINE L1 7616 7925 -36 1664 195 3 0 chr9 117240243 117240541 -622086 + AluJb SINE Alu 1 299 -13 285 152 13 38 chr9 117240545 117240624 -622003 + GA-rich Low_complexity Low_complexity 4 80 0 277 317 6 33 chr9 117243163 117243343 -619284 + C-rich Low_complexity Low_complexity 2 176 0 303 191 0 79 chr9 117245119 117245271 -617356 + (CGGGG)n Simple_repeat Simple_repeat 5 144 0 24 32 0 0 chr9 117250427 117250458 -612169 + GC_rich Low_complexity Low_complexity 1 31 0 343 247 41 12 chr9 117257339 117257509 -605118 + MER74B LTR ERVL 250 424 -198 318 228 44 35 chr9 117258028 117258142 -604485 - L1M4 LINE L1 -2555 3591 3477 530 129 0 21 chr9 117258175 117258268 -604359 + AluJ/FRAM SINE Alu 222 312 0 2841 256 84 32 chr9 117258272 117259020 -603607 + L1M4 LINE L1 3579 4415 -1731 2395 74 0 0 chr9 117259020 117259317 -603310 + AluSg1 SINE Alu 1 297 -12 2841 256 84 32 chr9 117259317 117259777 -602850 + L1M4 LINE L1 4415 4850 -1296 328 212 0 35 chr9 117259933 117260018 -602609 - MSTA LTR MaLR 0 428 347 2060 100 0 0 chr9 117260320 117260626 -602001 + AluSx SINE Alu 14 319 0 645 140 0 0 chr9 117261245 117261352 -601275 + MSTA LTR MaLR 1 107 -321 335 197 28 0 chr9 117261370 117261441 -601186 + AluJ/FRAM SINE Alu 217 289 -13 279 116 70 0 chr9 117261511 117261597 -601030 + L1MB4 LINE L1 6089 6180 0 750 119 0 0 chr9 117261652 117261761 -600866 + AluSp/q SINE Alu 200 308 -5 394 295 79 53 chr9 117261773 117262153 -600474 + L1MEd LINE L1 860 1249 -4870 602 345 66 27 chr9 117262325 117262708 -599919 + L1MEd LINE L1 3063 3472 -2657 1079 157 79 35 chr9 117262714 117262943 -599684 - AluJo SINE Alu -9 303 65 368 170 53 38 chr9 117263061 117263405 -599222 + (CACTC)n Simple_repeat Simple_repeat 1 349 0 314 157 51 39 chr9 117263429 117263607 -599020 + (CACTC)n Simple_repeat Simple_repeat 1 180 0 * 331 159 6 55 chr9 117263589 117263771 -598856 + (CTCA)n Simple_repeat Simple_repeat 2 174 0 457 126 6 55 chr9 117263792 117263974 -598653 + (CTCA)n Simple_repeat Simple_repeat 2 174 0 327 101 67 62 chr9 117263969 117264148 -598479 + (CACTC)n Simple_repeat Simple_repeat 1 180 0 * 196 311 0 16 chr9 117265628 117265689 -596938 - L2 LINE L2 -26 3287 3228 413 295 33 0 chr9 117266894 117267016 -595611 + L1MD3 LINE L1 7869 7994 -1 2287 65 0 0 chr9 117267104 117267394 -595233 - AluY SINE Alu -21 290 1 938 35 0 0 chr9 117267395 117267510 -595117 - AluY SINE Alu -196 115 1 2329 67 0 13 chr9 117268650 117268950 -593677 - AluY SINE Alu -15 296 1 340 306 77 12 chr9 117269065 117269235 -593392 - L1ME1 LINE L1 -93 6073 5893 782 281 18 43 chr9 117269473 117269751 -592876 - L1ME1 LINE L1 -402 5764 5497 318 263 40 98 chr9 117269937 117270211 -592416 + MER21B LTR ERV1 7 264 -599 6548 108 22 21 chr9 117270261 117271214 -591413 - LTR13 LTR ERVK 0 954 1 2246 73 42 0 chr9 117271309 117271597 -591030 - AluY SINE Alu -11 300 1 1269 156 110 53 chr9 117271600 117271882 -590745 - AluY SINE Alu -13 298 1 1278 153 0 0 chr9 117271886 117272082 -590545 - AluSg/x SINE Alu -19 293 98 1713 155 28 72 chr9 117272082 117272538 -590089 + MER61C LTR ERV1 14 433 -1 603 212 0 0 chr9 117272543 117272642 -589985 - AluJ/FLAM SINE Alu -213 99 1 1831 137 3 7 chr9 117272653 117272938 -589689 - AluSx SINE Alu -18 294 11 1309 82 113 0 chr9 117272958 117273153 -589474 - AluY SINE Alu -9 302 86 2227 47 0 40 chr9 117273290 117273607 -589020 + AluY SINE Alu 1 305 0 347 259 85 53 chr9 117273748 117273937 -588690 - L1M4 LINE L1 -1980 4166 3972 679 212 7 7 chr9 117274066 117274212 -588415 - Tigger7 DNA MER2_type -7 2484 2339 970 244 19 26 chr9 117274285 117274447 -588180 - Tigger7 DNA MER2_type -2219 268 107 2183 83 10 7 chr9 117274447 117274763 -587864 - AluSg SINE Alu 0 310 1 970 244 19 26 chr9 117274763 117274870 -587757 - Tigger7 DNA MER2_type -2380 107 1 245 278 283 5 chr9 117274871 117275062 -587565 - L1M4 LINE L1 -2297 3849 3606 260 247 176 0 chr9 117275068 117275153 -587474 - L1ME1 LINE L1 -880 5417 5318 345 348 130 47 chr9 117275161 117275460 -587167 - L1ME1 LINE L1 -824 5322 4999 2043 131 3 0 chr9 117275706 117275997 -586630 + AluSx SINE Alu 1 292 -20 1489 213 57 33 chr9 117276320 117276742 -585885 - MER70A LTR ERVL -39 433 2 2130 64 14 3 chr9 117277450 117277762 -584865 - AluY SINE Alu 0 311 1 640 220 156 0 chr9 117278976 117279117 -583510 - AluJb SINE Alu -30 282 120 446 268 149 47 chr9 117279117 117279352 -583275 + L1ME4a LINE L1 5856 6114 -7 2076 128 10 3 chr9 117279541 117279846 -582781 - AluJb SINE Alu -5 307 1 370 218 49 84 chr9 117279910 117279991 -582636 - L1MC4 LINE L1 -143 7899 7824 1773 176 6 10 chr9 117279991 117280303 -582324 - AluJb SINE Alu 0 312 2 370 218 49 84 chr9 117280303 117280363 -582264 - L1MC4 LINE L1 -218 7824 7763 238 299 82 30 chr9 117280779 117280913 -581714 + L1MC5 LINE L1 7773 7913 -48 2312 92 3 0 chr9 117280916 117281219 -581408 + AluSx SINE Alu 1 304 -8 26 30 0 0 chr9 117281267 117281300 -581327 + AT_rich Low_complexity Low_complexity 1 33 0 1333 217 40 73 chr9 117282257 117282709 -579918 + LTR42 LTR ERVL 59 495 0 2035 121 3 0 chr9 117283412 117283701 -578926 + AluSp SINE Alu 16 305 -8 24 0 0 0 chr9 117283753 117283777 -578850 + AT_rich Low_complexity Low_complexity 1 24 0 666 202 32 16 chr9 117283782 117283906 -578721 + FLAM_A SINE Alu 1 126 -7 1571 165 6 105 chr9 117283920 117284254 -578373 + AluJo SINE Alu 1 301 -1 433 248 187 45 chr9 117284254 117284295 -578332 + L1M4 LINE L1 4912 4946 -1200 2246 90 3 6 chr9 117284295 117284606 -578021 + AluY SINE Alu 1 310 -1 433 248 187 45 chr9 117284606 117284930 -577697 + L1M4 LINE L1 4946 5333 -813 245 270 55 0 chr9 117285136 117285299 -577328 + (AGCTG)n Simple_repeat Simple_repeat 1 172 0 8279 61 5 4 chr9 117285774 117286780 -575847 + LTR13 LTR ERVK 1 1007 0 1832 191 62 15 chr9 117286818 117287220 -575407 + LTR13 LTR ERVK 1 421 -586 516 216 9 0 chr9 117287218 117287379 -575248 + LTR13 LTR ERVK 313 421 -586 * 3117 177 27 35 chr9 117287377 117288185 -574442 + LTR13 LTR ERVK 313 1007 0 338 308 75 66 chr9 117288319 117288654 -573973 + L1ME3A LINE L1 5833 6170 0 1625 147 9 78 chr9 117288668 117288988 -573639 + AluJb SINE Alu 1 298 -14 2023 100 53 7 chr9 117289220 117289519 -573108 + AluSp SINE Alu 1 313 0 1433 191 0 31 chr9 117292290 117292583 -570044 + AluJb SINE Alu 1 284 -28 39 0 0 0 chr9 117292586 117292625 -570002 + AT_rich Low_complexity Low_complexity 1 39 0 311 125 71 38 chr9 117292718 117292965 -569662 + (CACTC)n Simple_repeat Simple_repeat 1 255 0 207 178 0 55 chr9 117292972 117293045 -569582 + (CTCA)n Simple_repeat Simple_repeat 3 71 0 309 122 70 32 chr9 117293045 117293201 -569426 + (CACTC)n Simple_repeat Simple_repeat 1 162 0 349 140 50 45 chr9 117293247 117293426 -569201 + (CACTC)n Simple_repeat Simple_repeat 1 180 0 311 109 77 39 chr9 117293450 117293606 -569021 + (CACTC)n Simple_repeat Simple_repeat 1 162 0 231 127 71 40 chr9 117293619 117293745 -568882 + (CACTC)n Simple_repeat Simple_repeat 1 130 0 1578 93 0 32 chr9 117294802 117294882 -567745 - AluSc SINE Alu -100 209 128 279 0 0 0 chr9 117294882 117294913 -567714 + (TA)n Simple_repeat Simple_repeat 1 31 0 2576 55 0 0 chr9 117294913 117295224 -567403 - AluY SINE Alu 0 311 1 1578 93 0 32 chr9 117295224 117295358 -567269 - AluSc SINE Alu -179 130 1 2208 110 3 0 chr9 117295365 117295666 -566961 - AluSx SINE Alu -10 302 1 2158 104 3 19 chr9 117295887 117296196 -566431 - AluSq SINE Alu -9 304 1 1676 237 83 26 chr9 117296196 117296724 -565903 + MER74B LTR ERVL 65 622 0 731 317 200 4 chr9 117296725 117297195 -565432 - L2 LINE L2 -2588 726 165 2364 66 3 35 chr9 117297278 117297596 -565031 - AluY SINE Alu -1 310 3 285 274 0 63 chr9 117298459 117298649 -563978 + G-rich Low_complexity Low_complexity 2 179 0 550 51 25 0 chr9 117298957 117299036 -563591 - L1PA14 LINE L1 -304 5857 5777 820 102 0 0 chr9 117299038 117299156 -563471 - AluSg/x SINE Alu -5 307 190 2356 4 0 0 chr9 117299159 117299418 -563209 - AluYa5 SINE Alu -52 259 1 2054 73 44 0 chr9 117299555 117299857 -562770 - AluY SINE Alu 0 314 1 666 302 94 12 chr9 117300093 117300421 -562206 - L2 LINE L2 -1348 1966 1612 803 230 0 18 chr9 117300518 117300683 -561944 - AluJb SINE Alu -17 295 134 1596 98 0 30 chr9 117300938 117301079 -561548 + AluSp SINE Alu 1 135 -178 1933 110 0 21 chr9 117301079 117301381 -561246 + AluSc SINE Alu 5 300 0 1596 98 0 30 chr9 117301381 117301472 -561155 + AluSp SINE Alu 135 227 -86 2184 124 0 0 chr9 117301474 117301781 -560846 + AluSg SINE Alu 1 307 -3 2444 72 0 0 chr9 117301781 117302086 -560541 + AluY SINE Alu 1 305 -6 2379 70 0 7 chr9 117302160 117302460 -560167 + AluSx SINE Alu 1 298 -14 365 211 23 105 chr9 117302582 117302641 -559986 - LTR16C LTR ERVL 0 491 447 2089 117 10 0 chr9 117302641 117302932 -559695 + AluSx SINE Alu 3 296 -16 365 211 23 105 chr9 117302932 117303005 -559622 - LTR16C LTR ERVL -44 447 370 368 267 17 9 chr9 117303417 117303533 -559094 + L2 LINE L2 1705 1821 -1493 1837 203 135 18 chr9 117303538 117303836 -558791 - MLT1E2 LTR MaLR -3 623 361 1927 150 7 0 chr9 117303836 117304129 -558498 - AluSx SINE Alu -17 295 1 1837 203 135 18 chr9 117304129 117304387 -558240 - MLT1E2 LTR MaLR -265 361 2 200 194 149 30 chr9 117304392 117304459 -558168 + L2 LINE L2 1829 1903 -1411 * 527 334 121 12 chr9 117304449 117304772 -557855 - L2 LINE L2 -69 3244 2887 1880 121 0 0 chr9 117304789 117305046 -557581 + AluSx SINE Alu 35 291 -21 729 111 0 0 chr9 117305047 117305146 -557481 + AluY SINE Alu 192 290 -21 1093 164 135 5 chr9 117305216 117305424 -557203 + MER46A DNA MER2_type 1 235 -1 344 174 120 11 chr9 117305466 117305558 -557069 - MLT1I LTR MaLR 0 409 308 249 228 10 119 chr9 117305585 117305649 -556978 - L2 LINE L2 -1022 2292 2241 2303 98 0 0 chr9 117305649 117305946 -556681 + AluSg SINE Alu 1 297 -13 249 228 10 119 chr9 117305946 117305982 -556645 - L2 LINE L2 -1073 2241 2203 1707 153 7 4 chr9 117305993 117306267 -556360 + AluJo SINE Alu 4 278 -34 236 114 0 0 chr9 117306267 117306302 -556325 - MLT1A1 LTR MaLR -330 35 1 1676 61 7 91 chr9 117306355 117306407 -556220 + L1PA14 LINE L1 5703 5758 -403 1959 119 10 10 chr9 117306407 117306700 -555927 + AluSx SINE Alu 7 299 -13 1676 61 7 91 chr9 117306700 117306745 -555882 + L1PA14 LINE L1 5758 5805 -356 2393 88 0 0 chr9 117306745 117307052 -555575 + AluSx SINE Alu 1 307 -5 1676 61 7 91 chr9 117307052 117307250 -555377 + L1PA14 LINE L1 5805 5974 -187 757 81 36 0 chr9 117307255 117307359 -555268 + L1PA14 LINE L1 6042 6156 -5 813 149 0 57 chr9 117307363 117307504 -555123 + FLAM_C SINE Alu 1 133 0 1402 96 5 0 chr9 117307508 117307696 -554931 + AluSp SINE Alu 1 189 -124 252 128 0 0 chr9 117307798 117307837 -554790 - Alu SINE Alu -261 39 1 2269 103 0 7 chr9 117308005 117308315 -554312 + AluSx SINE Alu 5 312 0 202 143 48 0 chr9 117308976 117309018 -553609 + C-rich Low_complexity Low_complexity 2 45 0 22 56 0 0 chr9 117309057 117309093 -553534 + GC_rich Low_complexity Low_complexity 1 36 0 255 61 0 0 chr9 117309175 117309208 -553419 + (CGG)n Simple_repeat Simple_repeat 3 35 0 269 205 0 68 chr9 117309250 117309367 -553260 + (CCCCG)n Simple_repeat Simple_repeat 5 113 0 186 156 0 0 chr9 117309510 117309555 -553072 + G-rich Low_complexity Low_complexity 6 50 0 308 235 0 105 chr9 117313198 117313398 -549229 + CT-rich Low_complexity Low_complexity 2 180 0 641 154 8 92 chr9 117314158 117314234 -548393 - FLAM_A SINE Alu -182 120 58 2053 115 27 0 chr9 117314234 117314530 -548097 - AluSx SINE Alu -8 304 1 641 154 8 92 chr9 117314530 117314583 -548044 - FLAM_A SINE Alu -244 58 2 262 234 24 73 chr9 117314683 117314807 -547820 - MLT1K LTR MaLR 0 588 471 884 78 0 16 chr9 117317944 117318072 -544555 - AluY SINE Alu -51 260 135 319 297 108 28 chr9 117319321 117319668 -542959 - MLT1C LTR MaLR -4 463 2 * 587 217 21 48 chr9 117319662 117319738 -542889 - LTR8A LTR ERV1 0 727 651 2488 57 0 0 chr9 117319738 117320038 -542589 + AluY SINE Alu 1 300 -11 587 217 21 48 chr9 117320038 117320150 -542477 - LTR8A LTR ERV1 -76 651 544 239 232 32 32 chr9 117320653 117320748 -541879 + G-rich Low_complexity Low_complexity 4 98 0 245 86 0 0 chr9 117322085 117322120 -540507 + Alu SINE Alu 15 49 -253 239 333 113 6 chr9 117322649 117322808 -539819 - MIR SINE MIR -20 242 67 2355 64 3 6 chr9 117323030 117323342 -539285 - AluY SINE Alu 0 311 1 317 298 88 103 chr9 117324144 117324294 -538333 - L1MC/D LINE L1 -2164 5644 5493 225 0 0 0 chr9 117324294 117324319 -538308 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 1965 98 4 11 chr9 117324321 117324595 -538032 - AluSp SINE Alu -41 272 1 317 298 88 103 chr9 117324595 117324607 -538020 - L1MC/D LINE L1 -2316 5492 5481 1555 189 39 4 chr9 117324607 117324887 -537740 - AluSx SINE Alu -22 290 1 317 298 88 103 chr9 117324887 117324947 -537680 - L1MC/D LINE L1 -2327 5481 5420 1843 40 4 4 chr9 117324947 117325174 -537453 - AluY SINE Alu -84 227 1 317 298 88 103 chr9 117325174 117325208 -537419 - L1MC/D LINE L1 -2388 5420 5387 530 249 24 78 chr9 117325208 117325413 -537214 - MLT1H1 LTR MaLR 0 555 362 2199 114 0 7 chr9 117325453 117325624 -537003 - AluSx SINE Alu -8 304 134 2287 90 3 0 chr9 117325624 117325924 -536703 - AluSp SINE Alu -12 301 1 2199 114 0 7 chr9 117325924 117326058 -536569 - AluSx SINE Alu -178 134 1 1683 168 0 36 chr9 117326328 117326661 -535966 + AluJb SINE Alu 1 312 0 1812 151 6 35 chr9 117331148 117331466 -531161 + AluSx SINE Alu 1 309 -3 357 304 64 0 chr9 117331906 117332031 -530596 + MIR SINE MIR 109 241 -21 2326 77 3 0 chr9 117332174 117332473 -530154 - AluY SINE Alu -11 300 1 417 309 121 18 chr9 117332503 117332785 -529842 - L2 LINE L2 -85 3228 2918 745 123 35 9 chr9 117334718 117334832 -527795 - FLAM_C SINE Alu -16 117 1 2042 111 21 0 chr9 117334907 117335196 -527431 + AluSg SINE Alu 1 295 -15 965 101 55 96 chr9 117335504 117335535 -527092 - Tigger4(Zombi) DNA MER2_type 0 2731 2700 1856 92 48 48 chr9 117335535 117335830 -526797 + AluSx SINE Alu 1 295 -17 1725 133 39 4 chr9 117335836 117336115 -526512 + AluSp SINE Alu 15 303 -10 965 101 55 96 chr9 117336115 117336275 -526352 - Tigger4(Zombi) DNA MER2_type -36 2695 2541 304 109 156 0 chr9 117336286 117336350 -526277 - HY3 scRNA scRNA -2 99 26 23 0 0 0 chr9 117336356 117336379 -526248 + AT_rich Low_complexity Low_complexity 1 23 0 1356 116 9 23 chr9 117336406 117336621 -526006 - AluJo SINE Alu -80 232 21 234 171 500 0 chr9 117336655 117336737 -525890 - Tigger4(Zombi) DNA MER2_type -2607 124 2 1000 171 225 4 chr9 117338861 117339101 -523526 - AluJo SINE Alu -7 295 3 2136 96 3 3 chr9 117339125 117339416 -523211 + AluSc SINE Alu 1 291 -18 2034 130 0 0 chr9 117339436 117339737 -522890 + AluSx SINE Alu 1 301 -11 2189 117 0 3 chr9 117339752 117340059 -522568 + AluSx SINE Alu 1 306 -6 710 238 6 30 chr9 117340148 117340316 -522311 + FRAM SINE Alu 1 164 -12 917 202 137 0 chr9 117340317 117340565 -522062 + L1MB4 LINE L1 5714 5995 -185 282 234 0 0 chr9 117340566 117340630 -521997 + L1MB4 LINE L1 6035 6098 -82 1107 84 13 0 chr9 117340630 117340784 -521843 - AluSc SINE Alu -5 304 149 572 43 0 0 chr9 117340784 117340854 -521773 - AluS SINE Alu -242 71 2 306 171 11 80 chr9 117340856 117340880 -521747 + L1MB4 LINE L1 6093 6117 -63 8305 55 6 5 chr9 117340880 117341886 -520741 + LTR13 LTR ERVK 1 1007 0 306 171 11 80 chr9 117341886 117341949 -520678 + L1MB4 LINE L1 6117 6174 -6 2259 96 0 10 chr9 117342338 117342472 -520155 + AluY SINE Alu 1 135 -176 2441 50 0 7 chr9 117342472 117342772 -519855 + AluY SINE Alu 1 298 -13 2259 96 0 10 chr9 117342772 117342951 -519676 + AluY SINE Alu 135 311 0 957 258 92 3 chr9 117342957 117343252 -519375 + L1MC4 LINE L1 7162 7482 -560 1576 83 0 14 chr9 117343252 117343469 -519158 + AluSg/x SINE Alu 89 302 -10 743 246 35 0 chr9 117343546 117343749 -518878 + L1M4 LINE L1 2324 2533 -3613 1552 221 112 26 chr9 117343869 117343960 -518667 + L1M4 LINE L1 2468 2550 -3596 2287 77 0 3 chr9 117343960 117344258 -518369 - AluY SINE Alu -14 297 1 1552 221 112 26 chr9 117344258 117344704 -517923 + L1M4 LINE L1 2550 3051 -3095 959 196 229 12 chr9 117344726 117344788 -517839 + AluJo SINE Alu 1 48 -254 2050 102 32 0 chr9 117344788 117345073 -517554 + AluSx SINE Alu 1 294 -18 959 196 229 12 chr9 117345073 117345255 -517372 + AluJo SINE Alu 48 298 -4 705 316 144 60 chr9 117345259 117345345 -517282 - L2 LINE L2 -1625 1689 1612 2205 107 0 3 chr9 117345345 117345654 -516973 + AluSg SINE Alu 1 308 -2 705 316 144 60 chr9 117345654 117346457 -516170 - L2 LINE L2 -1702 1612 725 425 167 47 0 chr9 117349446 117349596 -513031 + (TCCA)n Simple_repeat Simple_repeat 1 157 0 225 119 48 0 chr9 117349598 117349640 -512987 + (CCCA)n Simple_repeat Simple_repeat 3 46 0 1022 303 72 17 chr9 117349824 117350283 -512344 + L2 LINE L2 2458 2941 -373 249 225 35 160 chr9 117350286 117350486 -512141 + L2 LINE L2 3049 3223 -90 920 166 0 0 chr9 117350492 117350637 -511990 + AluJb SINE Alu 130 274 -38 26 0 0 27 chr9 117350665 117350681 -511946 + AT_rich Low_complexity Low_complexity 1 16 -20 2168 89 3 3 chr9 117350681 117350972 -511655 - AluSc SINE Alu -18 291 1 26 0 0 27 chr9 117350972 117350992 -511635 + AT_rich Low_complexity Low_complexity 16 36 0 1976 151 6 0 chr9 117350995 117351306 -511321 + AluSq SINE Alu 1 313 0 297 267 167 0 chr9 117351315 117351405 -511222 + L2 LINE L2 3209 3313 0 400 333 74 34 chr9 117351769 117352066 -510561 - L2 LINE L2 -443 2871 2563 2535 52 0 0 chr9 117352567 117352874 -509753 + AluY SINE Alu 1 307 -4 2400 70 3 19 chr9 117352884 117353200 -509427 + AluY SINE Alu 1 311 0 2078 118 0 0 chr9 117353273 117353562 -509065 + AluSc SINE Alu 1 289 -20 1000 408 0 1517 chr9 117355763 117355943 -506684 - Tigger3(Golem) DNA MER2_type -90 2938 2439 1648 157 3 63 chr9 117355943 117356096 -506531 + AluJo SINE Alu 1 125 -187 2154 84 3 3 chr9 117356096 117356393 -506234 + AluY SINE Alu 1 297 -14 1648 157 3 63 chr9 117356393 117356570 -506057 + AluJo SINE Alu 125 311 -1 1000 408 0 1517 chr9 117356570 117356668 -505959 - Tigger3(Golem) DNA MER2_type -589 2439 1 360 210 0 0 chr9 117357327 117357389 -505238 - MER94 DNA DNA 0 134 73 693 161 175 0 chr9 117357517 117357654 -504973 + FRAM SINE Alu 1 154 -22 2343 44 3 10 chr9 117357658 117357953 -504674 - AluY SINE Alu -18 293 1 23 33 0 0 chr9 117358330 117358360 -504267 + GC_rich Low_complexity Low_complexity 1 30 0 304 229 94 10 chr9 117358718 117358814 -503813 + LTR8A LTR ERV1 106 209 -518 791 223 173 28 chr9 117358896 117359142 -503485 + LTR8A LTR ERV1 358 663 -64 2454 60 0 0 chr9 117359142 117359443 -503184 - AluY SINE Alu -10 301 1 791 223 173 28 chr9 117359443 117359519 -503108 + LTR8A LTR ERV1 663 727 0 353 297 108 28 chr9 117359513 117359860 -502767 + MLT1C LTR MaLR 2 463 -4 * 400 218 49 84 chr9 117361069 117361129 -501498 + L1MC4 LINE L1 7763 7824 -218 1730 176 6 10 chr9 117361129 117361441 -501186 + AluJb SINE Alu 2 312 0 400 218 49 84 chr9 117361441 117361522 -501105 + L1MC4 LINE L1 7824 7899 -143 2035 128 10 3 chr9 117361586 117361891 -500736 + AluJb SINE Alu 1 307 -5 409 221 166 64 chr9 117362080 117362315 -500312 - L1ME4a LINE L1 -7 6114 5856 636 220 156 0 chr9 117362315 117362456 -500171 + AluJb SINE Alu 120 282 -30 2106 64 14 3 chr9 117363670 117363982 -498645 + AluY SINE Alu 1 311 0 1649 213 57 33 chr9 117364690 117365112 -497515 + MER70A LTR ERVL 2 433 -39 2003 131 3 0 chr9 117365435 117365726 -496901 - AluSx SINE Alu -20 292 1 279 253 172 3 chr9 117366235 117366364 -496263 + L1M LINE L1 5269 5417 -753 281 278 283 5 chr9 117366370 117366561 -496066 + L1M4 LINE L1 3606 3849 -2297 1058 244 19 26 chr9 117366562 117366669 -495958 + Tigger7 DNA MER2_type 1 107 -626 2153 83 10 7 chr9 117366669 117366985 -495642 + AluSg SINE Alu 1 310 0 1058 244 19 26 chr9 117366985 117367147 -495480 + Tigger7 DNA MER2_type 107 268 -465 727 212 7 7 chr9 117367220 117367366 -495261 + Tigger7 DNA MER2_type 2335 2480 -7 387 239 89 38 chr9 117367433 117367684 -494943 + L1M4 LINE L1 3879 4166 -1980 2202 47 0 40 chr9 117367825 117368142 -494485 - AluY SINE Alu 0 305 1 1297 82 113 0 chr9 117368279 117368474 -494153 + AluY SINE Alu 86 302 -9 1804 137 3 7 chr9 117368494 117368779 -493848 + AluSx SINE Alu 11 294 -18 595 214 0 0 chr9 117368791 117368889 -493738 + AluJ/FLAM SINE Alu 2 99 -213 1885 149 28 72 chr9 117368894 117369350 -493277 - MER61C LTR ERV1 -1 433 14 1250 153 0 0 chr9 117369350 117369546 -493081 + AluSg/x SINE Alu 96 291 -19 1232 156 110 53 chr9 117369550 117369832 -492795 + AluY SINE Alu 1 298 -13 2588 29 0 3 chr9 117369835 117370141 -492486 + AluYa5 SINE Alu 1 305 -6 847 271 112 54 chr9 117370155 117370657 -491970 + HAL1 LINE L1 1612 2142 -365 2145 81 3 20 chr9 117371283 117371578 -491049 - AluSc SINE Alu -19 290 1 2035 138 0 0 chr9 117372732 117373030 -489597 + AluSx SINE Alu 1 298 -14 1906 121 33 0 chr9 117373034 117373341 -489286 + AluSg SINE Alu 1 316 0 1374 181 64 25 chr9 117373352 117373634 -488993 + AluSx SINE Alu 1 293 -19 2071 99 7 0 chr9 117373739 117374046 -488581 - AluSq SINE Alu 0 309 1 296 333 73 7 chr9 117374047 117374197 -488430 + L1ME3A LINE L1 5579 5738 -2070 1549 143 8 8 chr9 117375749 117376001 -486626 - AluJb SINE Alu -17 295 44 1552 192 0 22 chr9 117376150 117376467 -486160 + AluJo SINE Alu 2 311 -1 2406 88 6 19 chr9 117378593 117378910 -483717 - AluSq SINE Alu 0 313 1 8027 45 2 2 chr9 117379490 117380469 -482158 + LTR13 LTR ERVK 29 1007 0 2569 51 3 0 chr9 117382430 117382723 -479904 + AluY SINE Alu 1 294 -17 615 107 0 0 chr9 117383164 117383248 -479379 + AluSg1 SINE Alu 2 85 -224 2546 62 0 10 chr9 117383248 117383552 -479075 + AluY SINE Alu 1 301 -10 1610 99 45 0 chr9 117383551 117383772 -478855 + AluSg1 SINE Alu 76 306 -6 * 218 282 27 9 chr9 117384556 117384666 -477961 + G-rich Low_complexity Low_complexity 2 113 0 3962 252 57 24 chr9 117384783 117385030 -477597 - L1MEc LINE L1 -1778 4437 4199 2178 115 0 40 chr9 117385030 117385353 -477274 + AluSg SINE Alu 1 310 0 3962 252 57 24 chr9 117385353 117386414 -476213 - L1MEc LINE L1 -2016 4199 3087 1341 94 236 9 chr9 117386414 117386626 -476001 - AluSg1 SINE Alu -49 260 1 801 219 32 50 chr9 117386630 117386751 -475876 - L1MEc LINE L1 -3890 2506 2384 2571 48 0 0 chr9 117386751 117387044 -475583 - AluY SINE Alu -18 293 1 1494 209 10 14 chr9 117387044 117387340 -475287 - AluJo SINE Alu -17 295 1 801 219 32 50 chr9 117387340 117387500 -475127 - L1MEc LINE L1 -4010 2386 2229 391 286 51 40 chr9 117387517 117387692 -474935 - L1MEc LINE L1 -5508 697 521 2441 92 0 3 chr9 117387697 117388002 -474625 - AluSx SINE Alu -8 304 1 2168 112 0 10 chr9 117388013 117388308 -474319 - AluSc SINE Alu -17 292 1 242 218 18 0 chr9 117388635 117388690 -473937 - L1MEc LINE L1 -5964 241 186 326 296 56 84 chr9 117389662 117389875 -472752 + L1ME3A LINE L1 5817 6023 -147 445 271 42 0 chr9 117389986 117390104 -472523 - FLAM_A SINE Alu -10 123 1 23 0 0 0 chr9 117390146 117390169 -472458 + AT_rich Low_complexity Low_complexity 1 23 0 2057 141 7 0 chr9 117390198 117390489 -472138 + AluSx SINE Alu 1 293 -19 307 200 36 73 chr9 117392785 117392895 -469732 - L1ME3 LINE L1 -83 6079 5974 438 239 11 0 chr9 117392986 117393078 -469549 + MER58B DNA MER1_type 245 337 -4 304 318 9 0 chr9 117393113 117393223 -469404 - L1ME3 LINE L1 -236 5934 5824 329 208 149 56 chr9 117393263 117393441 -469186 + HAL1 LINE L1 863 1076 -1431 2466 94 0 0 chr9 117393441 117393749 -468878 + AluSg SINE Alu 1 308 -2 329 208 149 56 chr9 117393749 117393839 -468788 + HAL1 LINE L1 1076 1156 -1351 2653 46 0 3 chr9 117393839 117394143 -468484 + AluY SINE Alu 1 303 -8 1700 149 3 41 chr9 117394145 117394460 -468167 + AluY SINE Alu 1 303 -8 286 333 125 22 chr9 117394484 117394805 -467822 + L2 LINE L2 2467 2820 -494 508 188 200 29 chr9 117394810 117394980 -467647 + MER58C DNA MER1_type 16 214 -1 226 203 0 101 chr9 117397224 117397293 -465334 + L2 LINE L2 3184 3245 -68 285 269 170 6 chr9 117397323 117397505 -465122 - Charlie1b DNA MER1_type 0 523 312 467 264 187 0 chr9 117397627 117397862 -464765 - Charlie1b DNA MER1_type -151 372 94 1845 179 0 10 chr9 117398096 117398409 -464218 + AluJb SINE Alu 3 312 0 291 210 152 22 chr9 117398563 117398701 -463926 - L1ME4a LINE L1 -2 6119 5964 349 319 54 27 chr9 117399574 117399759 -462868 - L2 LINE L2 -1420 1894 1705 2059 108 0 30 chr9 117399764 117400061 -462566 + AluSx SINE Alu 3 290 -22 620 236 0 21 chr9 117400071 117400215 -462412 + FLAM_C SINE Alu 3 143 0 182 234 39 78 chr9 117400236 117400364 -462263 - L2 LINE L2 -1637 1677 1555 269 132 0 0 chr9 117400862 117400900 -461727 - Alu SINE Alu -259 40 3 1032 214 12 0 chr9 117400901 117401158 -461469 - L1M4 LINE L1 -901 5245 4986 2656 141 56 41 chr9 117401159 117401239 -461388 + Tigger3b DNA MER2_type 2 79 -2949 2056 120 7 36 chr9 117401239 117401547 -461080 + AluSx SINE Alu 1 299 -13 2656 141 56 41 chr9 117401547 117401999 -460628 + Tigger3b DNA MER2_type 79 542 -689 691 129 121 0 chr9 117402001 117402117 -460510 - FLAM_C SINE Alu -3 130 1 2239 109 3 0 chr9 117402129 117402423 -460204 - AluSx SINE Alu -17 295 1 2412 93 0 7 chr9 117402465 117402765 -459862 - AluSq SINE Alu -15 298 1 2671 133 34 14 chr9 117402770 117403207 -459420 + Tigger3b DNA MER2_type 786 1231 0 2161 118 16 0 chr9 117403257 117403561 -459066 - AluSp SINE Alu -4 309 1 584 207 36 21 chr9 117403697 117403837 -458790 - L1M4 LINE L1 -1162 4984 4843 1791 118 71 0 chr9 117403837 117404091 -458536 + AluSx SINE Alu 1 272 -40 2096 112 3 26 chr9 117404240 117404552 -458075 - AluSq SINE Alu -8 305 1 354 268 160 10 chr9 117404649 117404843 -457784 + L2 LINE L2 2640 2862 -452 1214 45 0 0 chr9 117405825 117405958 -456669 + AluSq/x SINE Alu 1 133 -180 2259 111 0 0 chr9 117405962 117406259 -456368 + AluY SINE Alu 1 297 -14 2246 125 3 0 chr9 117406264 117406569 -456058 + AluSq SINE Alu 2 307 -6 637 116 20 34 chr9 117406577 117406724 -455903 + GA-rich Low_complexity Low_complexity 2 146 0 34 45 0 56 chr9 117407131 117407220 -455407 + GC_rich Low_complexity Low_complexity 1 84 0 21 71 0 0 chr9 117407247 117407289 -455338 + GC_rich Low_complexity Low_complexity 1 42 0 187 355 71 19 chr9 117408202 117408309 -454318 - MIR SINE MIR -8 254 135 1463 168 96 27 chr9 117408309 117408601 -454026 - AluJb SINE Alu 0 312 1 187 355 71 19 chr9 117408601 117408648 -453979 - MIR SINE MIR -127 135 92 203 329 14 0 chr9 117408652 117408722 -453905 + L2 LINE L2 3240 3310 -3 468 280 119 41 chr9 117408781 117409024 -453603 - MIR SINE MIR 0 262 1 1250 129 0 6 chr9 117409323 117409494 -453133 + AluSx SINE Alu 1 170 -142 272 221 79 142 chr9 117409753 117409873 -452754 - HAL1 LINE L1 0 2507 2381 1306 19 0 0 chr9 117409873 117410031 -452596 - L1PA4 LINE L1 0 6155 5998 2177 118 0 3 chr9 117410031 117410328 -452299 - AluSx SINE Alu -16 296 1 272 221 79 142 chr9 117410328 117410459 -452168 - HAL1 LINE L1 -124 2383 2271 1781 147 0 11 chr9 117410569 117410834 -451793 + AluJo SINE Alu 40 301 -11 2324 78 3 10 chr9 117410837 117411132 -451495 + AluY SINE Alu 1 293 -18 189 0 0 0 chr9 117411247 117411268 -451359 + (CAAG)n Simple_repeat Simple_repeat 4 24 0 258 81 0 0 chr9 117411281 117411318 -451309 + (GAAAA)n Simple_repeat Simple_repeat 3 39 0 1802 193 103 35 chr9 117411318 117411812 -450815 + L1MB7 LINE L1 4655 5191 -955 2064 91 45 3 chr9 117411812 117412098 -450529 + AluSx SINE Alu 1 298 -14 1802 193 103 35 chr9 117412098 117412146 -450481 + L1MB7 LINE L1 5191 5234 -912 576 188 46 124 chr9 117412144 117412362 -450265 + L1MB7 LINE L1 5959 6159 -25 * 1238 169 169 17 chr9 117412362 117412723 -449904 + Cheshire DNA MER1_type 2005 2420 0 186 281 8 109 chr9 117412898 117413026 -449601 + L2 LINE L2 2631 2745 -569 244 62 0 0 chr9 117413173 117413205 -449422 + Alu SINE Alu 1 32 -269 1645 139 114 7 chr9 117413219 117413492 -449135 + AluSx SINE Alu 1 302 -10 848 213 193 0 chr9 117413751 117413958 -448669 - Tigger3(Golem) DNA MER2_type -12 3017 2771 243 329 0 0 chr9 117413955 117414031 -448596 - Tigger3(Golem) DNA MER2_type -2887 142 67 * 932 179 11 22 chr9 117414031 117414215 -448412 - AluJb SINE Alu -14 298 117 1290 118 0 0 chr9 117414315 117414493 -448134 + AluSq SINE Alu 134 311 -2 655 193 25 0 chr9 117414996 117415115 -447512 + FLAM_C SINE Alu 2 123 -20 29 78 0 0 chr9 117415117 117415181 -447446 + AT_rich Low_complexity Low_complexity 1 64 0 2099 121 0 33 chr9 117415565 117415872 -446755 + AluSx SINE Alu 1 297 -15 423 113 0 0 chr9 117415951 117416013 -446614 + AluS SINE Alu 2 63 -249 2299 109 0 7 chr9 117416013 117416316 -446311 + AluSx SINE Alu 4 304 -8 2194 123 3 3 chr9 117416317 117416625 -446002 + AluSx SINE Alu 1 308 -4 1128 145 18 0 chr9 117416625 117416791 -445836 + AluSq SINE Alu 134 302 -11 445 298 69 37 chr9 117416804 117417022 -445605 + HAL1 LINE L1 721 945 -1562 1150 113 0 12 chr9 117417027 117417187 -445440 - AluJb SINE Alu -7 305 148 682 303 59 53 chr9 117417292 117417408 -445219 + HAL1 LINE L1 958 1072 -1435 2177 85 3 41 chr9 117417408 117417732 -444895 + AluSp SINE Alu 1 313 0 682 303 59 53 chr9 117417732 117417937 -444690 + HAL1 LINE L1 1072 1282 -1225 1433 156 5 0 chr9 117417937 117418148 -444479 + AluSx SINE Alu 1 212 -100 258 105 53 0 chr9 117418148 117418186 -444441 + FLAM_A SINE Alu 77 116 -17 189 0 0 0 chr9 117418189 117418210 -444417 + (CAA)n Simple_repeat Simple_repeat 1 21 0 2109 128 3 0 chr9 117418403 117418700 -443927 + AluSq SINE Alu 11 308 -5 487 148 250 0 chr9 117418704 117418812 -443815 + AluJo SINE Alu 2 136 -176 1413 156 76 62 chr9 117418814 117418957 -443670 + AluJb SINE Alu 2 142 -170 1808 123 19 58 chr9 117418957 117419267 -443360 + AluSx SINE Alu 3 300 -12 2125 129 0 25 chr9 117419269 117419587 -443040 + AluSg SINE Alu 1 310 0 1413 156 76 62 chr9 117419587 117419729 -442898 + AluJb SINE Alu 142 294 -18 401 172 233 9 chr9 117419735 117419851 -442776 + HAL1 LINE L1 1498 1639 -868 1936 133 0 20 chr9 117419853 117420147 -442480 + AluSx SINE Alu 1 288 -24 23 0 0 0 chr9 117420344 117420367 -442260 + AT_rich Low_complexity Low_complexity 1 23 0 230 282 10 19 chr9 117420612 117420715 -441912 + CT-rich Low_complexity Low_complexity 5 106 0 2341 136 42 116 chr9 117420828 117421372 -441255 - L1MA3 LINE L1 -29 6276 5773 1737 143 0 0 chr9 117421449 117421722 -440905 - AluSx SINE Alu -38 274 2 1632 168 0 40 chr9 117421888 117422192 -440435 - AluJb SINE Alu -15 297 6 251 33 0 0 chr9 117422391 117422421 -440206 - L1MA3 LINE L1 -213 6092 6063 234 213 189 0 chr9 117422479 117422601 -440026 - L1P LINE L1 -758 5407 5263 225 0 0 0 chr9 117422670 117422695 -439932 + (TTAA)n Simple_repeat Simple_repeat 2 26 0 743 192 0 0 chr9 117422695 117422815 -439812 - FLAM_A SINE Alu -12 121 2 1567 141 16 78 chr9 117422829 117423148 -439479 - AluJb SINE Alu -13 299 1 1625 156 18 14 chr9 117423332 117423615 -439012 + AluJb SINE Alu 6 289 -23 360 159 0 0 chr9 117423738 117423801 -438826 - Alu SINE Alu -1 301 239 572 295 52 36 chr9 117423801 117424221 -438406 - L1M4 LINE L1 -1462 4684 4258 291 309 111 0 chr9 117424230 117424356 -438271 - L1M4 LINE L1 -1939 4207 4068 759 150 13 20 chr9 117424380 117424533 -438094 - L1MC4 LINE L1 0 8042 7891 1892 96 41 10 chr9 117424759 117425050 -437577 - AluSx SINE Alu -12 300 1 2141 107 3 0 chr9 117425077 117425376 -437251 - AluSq SINE Alu -13 300 1 1627 184 0 10 chr9 117425481 117425775 -436852 - AluJb SINE Alu -21 291 1 1673 113 102 4 chr9 117425780 117426046 -436581 - AluSg SINE Alu -18 292 1 234 0 0 0 chr9 117426055 117426081 -436546 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1962 104 7 0 chr9 117426083 117426361 -436266 - AluSx SINE Alu -32 280 1 253 209 164 129 chr9 117427316 117427342 -435285 - L1ME LINE L1 -489 5632 5608 715 194 0 8 chr9 117427342 117427471 -435156 - FLAM_A SINE Alu -4 129 2 253 209 164 129 chr9 117427471 117427558 -435069 - L1ME LINE L1 -513 5608 5526 1799 97 123 0 chr9 117427558 117427827 -434800 - AluSx SINE Alu 0 302 1 253 209 164 129 chr9 117427827 117427937 -434690 - L1ME LINE L1 -595 5526 5400 21 36 0 0 chr9 117430160 117430188 -432439 + AT_rich Low_complexity Low_complexity 1 28 0 802 184 14 27 chr9 117431387 117431534 -431093 - FRAM SINE Alu -18 158 14 1077 178 58 29 chr9 117431556 117431798 -430829 + AluJo SINE Alu 54 302 -10 1535 141 39 75 chr9 117431809 117432083 -430544 + L1M4 LINE L1 5238 5496 -678 1659 160 7 7 chr9 117432083 117432370 -430257 + AluJb SINE Alu 18 304 -8 1535 141 39 75 chr9 117432370 117432467 -430160 + L1M4 LINE L1 5496 5595 -579 375 176 29 0 chr9 117432480 117432548 -430079 - L1MD1 LINE L1 -23 6219 6150 1074 232 113 52 chr9 117432549 117432972 -429655 - MLT1C LTR MaLR -1 466 18 1940 104 0 58 chr9 117432990 117433299 -429328 - AluSg SINE Alu -19 291 1 404 315 44 67 chr9 117433451 117433749 -428878 - L2 LINE L2 -616 2698 2408 1291 176 27 30 chr9 117433831 117434093 -428534 - AluJo SINE Alu -51 261 1 324 222 120 37 chr9 117434094 117434202 -428425 - L1 LINE L1 -1818 4328 4212 489 231 46 41 chr9 117434275 117434470 -428157 + L1MC4 LINE L1 6953 7148 -894 2215 92 0 7 chr9 117434568 117434871 -427756 + AluSx SINE Alu 1 301 -11 743 274 94 24 chr9 117435229 117435569 -427058 - L2 LINE L2 -1117 2197 1834 790 261 76 16 chr9 117436128 117436206 -426421 - MER33 DNA MER1_type -2264 321 249 2037 123 0 3 chr9 117436206 117436506 -426121 + AluSx SINE Alu 1 299 -13 790 261 76 16 chr9 117436506 117436730 -425897 - MER33 DNA MER1_type -2336 249 1 203 321 37 59 chr9 117437221 117437293 -425334 - L2 LINE L2 -13 3300 3228 2054 110 0 0 chr9 117437293 117437583 -425044 + AluSx SINE Alu 1 290 -22 180 0 0 0 chr9 117437587 117437607 -425020 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 203 321 37 59 chr9 117437607 117437716 -424911 - L2 LINE L2 -88 3225 3118 950 271 155 46 chr9 117437731 117437840 -424787 + Cheshire DNA MER1_type 1 97 -2323 2261 81 0 10 chr9 117437840 117438137 -424490 + AluSg SINE Alu 1 294 -16 950 271 155 46 chr9 117438137 117438614 -424013 + Cheshire DNA MER1_type 97 651 -1769 777 235 183 9 chr9 117438615 117438818 -423809 + L1M4c LINE L1 1384 1550 -4834 2323 65 0 26 chr9 117438818 117439127 -423500 + AluY SINE Alu 1 301 -10 777 235 183 9 chr9 117439127 117439268 -423359 + L1M4c LINE L1 1550 1788 -4596 879 326 3 128 chr9 117439281 117439625 -423002 + AluJb SINE Alu 1 301 -1 1232 217 13 66 chr9 117439628 117439775 -422852 + AluJb SINE Alu 2 124 -178 216 0 0 0 chr9 117439775 117439799 -422828 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1232 217 13 66 chr9 117439799 117439969 -422658 + AluJb SINE Alu 124 302 0 2075 131 126 23 chr9 117440021 117440409 -422218 + MSTA LTR MaLR 1 428 0 912 180 13 0 chr9 117441395 117441545 -421082 - FRAM SINE Alu -14 152 1 2138 114 7 13 chr9 117441552 117441858 -420769 - AluSx SINE Alu -8 304 1 40 0 0 0 chr9 117442448 117442488 -420139 + AT_rich Low_complexity Low_complexity 1 40 0 1811 159 7 0 chr9 117444066 117444361 -418266 - AluSx SINE Alu -15 297 1 431 215 228 37 chr9 117445434 117445901 -416726 + MLT1G LTR MaLR 9 561 -29 530 209 82 30 chr9 117447610 117447744 -414883 + MIR SINE MIR 9 149 -113 31 26 0 0 chr9 117447834 117447872 -414755 + AT_rich Low_complexity Low_complexity 1 38 0 2079 124 0 3 chr9 117448592 117448898 -413729 + AluSx SINE Alu 1 305 -7 1685 183 96 18 chr9 117449347 117449680 -412947 + L1MB3 LINE L1 5446 5804 -367 884 114 30 0 chr9 117449681 117449812 -412815 + AluJb SINE Alu 1 135 -177 197 83 28 0 chr9 117449825 117449861 -412766 + (TA)n Simple_repeat Simple_repeat 1 37 0 2093 163 16 0 chr9 117449862 117450230 -412397 + L1MB3 LINE L1 5803 6176 -7 1228 96 0 11 chr9 117450425 117450603 -412024 + AluSg/x SINE Alu 137 312 0 864 161 14 0 chr9 117450634 117450777 -411850 - FRAM SINE Alu -10 166 22 259 243 29 0 chr9 117450836 117450906 -411721 + L1MC/D LINE L1 5828 5899 -1909 626 281 237 25 chr9 117450907 117451338 -411289 + L2 LINE L2 2456 2977 -337 2199 102 0 0 chr9 117451443 117451738 -410889 - AluSg SINE Alu -15 295 1 581 275 48 8 chr9 117452727 117452838 -409789 + L1MB4 LINE L1 4273 4378 -1768 2128 111 0 0 chr9 117452838 117453126 -409501 + AluSx SINE Alu 2 289 -23 581 275 48 8 chr9 117453126 117453265 -409362 + L1MB4 LINE L1 4378 4533 -1613 1288 222 92 12 chr9 117453302 117453640 -408987 - MLT1A1 LTR MaLR 0 365 1 2456 206 40 63 chr9 117453749 117454138 -408489 + L1MB4 LINE L1 4561 4957 -1189 2359 70 3 0 chr9 117454138 117454438 -408189 + AluY SINE Alu 7 307 -4 2456 206 40 63 chr9 117454438 117454481 -408146 + L1MB4 LINE L1 4957 4999 -1147 1616 172 30 0 chr9 117454481 117454777 -407850 + AluJb SINE Alu 1 305 -7 2456 206 40 63 chr9 117454777 117455086 -407541 + L1MB4 LINE L1 4999 5286 -860 572 216 9 0 chr9 117455086 117455197 -407430 + FLAM_A SINE Alu 1 112 -30 3849 182 71 23 chr9 117455214 117456088 -406539 + L1MB4 LINE L1 5265 6180 0 1058 132 11 17 chr9 117456210 117456384 -406243 + AluJo SINE Alu 108 280 -32 534 279 61 41 chr9 117456462 117456817 -405810 + L1M4c LINE L1 1926 2295 -4089 960 194 12 6 chr9 117456817 117456987 -405640 + FAM SINE Alu 1 171 -4 534 279 61 41 chr9 117456987 117457140 -405487 + L1M4c LINE L1 2295 2444 -3940 2021 103 0 48 chr9 117457145 117457456 -405171 + AluSx SINE Alu 1 296 -16 1554 198 13 0 chr9 117458708 117459016 -403611 + AluJo SINE Alu 1 312 0 2038 113 0 0 chr9 117459050 117459341 -403286 + AluSp SINE Alu 1 291 -22 2048 228 83 7 chr9 117459567 117460266 -402361 + L1M4c LINE L1 2466 3217 -3165 1680 213 38 46 chr9 117460289 117460706 -401921 - MLT1C LTR MaLR -53 414 1 949 133 0 0 chr9 117460740 117460875 -401752 + AluSq/x SINE Alu 1 135 -177 1910 125 7 3 chr9 117460875 117461170 -401457 + AluSx SINE Alu 1 296 -16 984 292 42 11 chr9 117461170 117461646 -400981 + L1M4c LINE L1 3436 3926 -2456 834 152 7 13 chr9 117461651 117461802 -400825 + FRAM SINE Alu 13 162 -14 1963 115 4 0 chr9 117461810 117462088 -400539 + AluSq SINE Alu 1 279 -34 2316 83 0 0 chr9 117462088 117462388 -400239 + AluY SINE Alu 1 300 -11 24 0 0 0 chr9 117462403 117462427 -400200 + AT_rich Low_complexity Low_complexity 1 24 0 2286 201 83 16 chr9 117462427 117463039 -399588 + L1M4c LINE L1 3920 4572 -1810 354 61 0 0 chr9 117663054 117663103 -199524 + (GAATG)n Satellite Satellite 2 50 0 906 138 0 0 chr9 117663115 117663289 -199338 + (GAATG)n Satellite Satellite 1 174 0 858 127 0 0 chr9 117663315 117663525 -199102 + (GAATG)n Satellite Satellite 1 210 0 870 131 0 0 chr9 117663540 117663708 -198919 + (GAATG)n Satellite Satellite 2 169 0 859 152 6 3 chr9 117663723 117664052 -198575 + (GAATG)n Satellite Satellite 1 330 0 678 110 0 0 chr9 117664067 117664232 -198395 + (GAATG)n Satellite Satellite 1 165 0 212 248 0 8 chr9 117664246 117664363 -198264 + (GAATG)n Satellite Satellite 2 117 0 198 0 0 0 chr9 117664608 117664630 -197997 + (A)n Simple_repeat Simple_repeat 1 22 0 1367 171 8 24 chr9 117664736 117664982 -197645 + AluJo SINE Alu 42 283 -29 565 256 140 18 chr9 117665007 117665444 -197183 + L1ME LINE L1 5158 5649 -521 413 94 0 0 chr9 117666083 117666136 -196491 + Alu SINE Alu 243 295 -17 1221 226 6 42 chr9 117666174 117666193 -196434 + L1 LINE L1 3437 3455 -2691 1470 181 103 3 chr9 117666193 117666475 -196152 + AluJo SINE Alu 1 310 -2 1221 226 6 42 chr9 117666475 117666791 -195836 + L1 LINE L1 3455 3760 -2386 2526 58 0 3 chr9 117666791 117667085 -195542 - AluY SINE Alu -16 295 3 2359 252 69 6 chr9 117667087 117667623 -195004 - L1M2a LINE L1 -5158 2010 1441 714 129 26 9 chr9 117667853 117667969 -194658 - THE1C LTR MaLR -257 118 1 3113 253 58 38 chr9 117667970 117668836 -193791 - L1MDa LINE L1 -5576 964 82 410 194 0 0 chr9 117668836 117668908 -193719 + Tigger7 DNA MER2_type 3 74 -265 798 151 19 2 chr9 117668915 117669131 -193496 - Tigger7 DNA MER2_type -204 346 79 529 169 0 0 chr9 117669132 117669215 -193412 + Tigger7 DNA MER2_type 2242 2324 -263 2179 104 16 23 chr9 117669224 117669533 -193094 + AluSq SINE Alu 1 307 -6 747 257 69 25 chr9 117669803 117670116 -192511 + L1 LINE L1 4057 4384 -1757 1497 238 0 0 chr9 117670116 117670418 -192209 + AluJb SINE Alu 1 302 -10 1707 187 3 3 chr9 117670439 117670738 -191889 + AluJo SINE Alu 1 299 -13 1444 240 13 40 chr9 117670740 117671152 -191475 - L1M4 LINE L1 -1293 4853 4454 2087 133 0 3 chr9 117671152 117671461 -191166 - AluY SINE Alu -3 308 1 1444 240 13 40 chr9 117671461 117671519 -191108 - L1M4 LINE L1 -1692 4454 4396 804 246 20 5 chr9 117671519 117671718 -190909 - AluJo SINE Alu -21 291 90 263 83 0 0 chr9 117671741 117671777 -190850 - MER31-int LTR ERV1 -3839 1097 1062 596 179 0 0 chr9 117671777 117671883 -190744 + MLT2B3 LTR ERVL 1 106 -448 1679 138 20 4 chr9 117672292 117672546 -190081 - AluJo SINE Alu -54 258 1 370 265 118 63 chr9 117672782 117672839 -189788 + L1M3 LINE L1 3342 3394 -2752 2625 37 3 0 chr9 117672839 117673134 -189493 - AluY SINE Alu -15 296 1 370 265 118 63 chr9 117673134 117673436 -189191 + L1M3 LINE L1 3394 3705 -2441 232 243 95 0 chr9 117673436 117673510 -189117 + L2 LINE L2 3194 3274 -39 464 263 97 52 chr9 117673768 117674057 -188570 + L1M3 LINE L1 3726 4027 -2119 639 164 30 22 chr9 117674061 117674195 -188432 + L1MB8 LINE L1 6007 6141 -37 1399 268 132 19 chr9 117674210 117675135 -187492 + L1M3 LINE L1 4006 5034 -1112 998 209 28 19 chr9 117675163 117675374 -187253 + AluJb SINE Alu 1 213 -99 344 125 0 0 chr9 117675481 117675529 -187098 + MSTA LTR MaLR 379 426 -2 8326 198 58 19 chr9 117675529 117678858 -183769 + L1MDa LINE L1 958 4433 -2107 198 91 0 0 chr9 117678858 117678891 -183736 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 8326 198 58 19 chr9 117678891 117679138 -183489 + L1MDa LINE L1 4433 4669 -1871 1359 135 67 14 chr9 117679181 117679463 -183164 + AluSx SINE Alu 1 297 -15 5840 139 65 32 chr9 117679660 117681724 -180903 + L1MA5 LINE L1 4132 6295 -5 5552 153 27 37 chr9 117681827 117682905 -179722 - MER11C LTR ERVK -4 1067 1 1121 191 55 113 chr9 117682905 117683162 -179465 + L1M3 LINE L1 5161 5431 -752 2025 133 54 0 chr9 117683162 117683456 -179171 + AluSx SINE Alu 1 310 -2 1121 191 55 113 chr9 117683456 117683483 -179144 + L1M3 LINE L1 5431 5458 -725 2013 144 3 0 chr9 117683483 117683774 -178853 + AluSx SINE Alu 1 292 -20 1121 191 55 113 chr9 117683774 117684086 -178541 + L1M3 LINE L1 5458 5774 -409 308 209 96 9 chr9 117684373 117684488 -178139 - AluSq/x SINE Alu -178 125 1 1271 236 21 82 chr9 117685006 117685543 -177084 + L1MC5 LINE L1 6740 7243 -741 2344 101 0 0 chr9 117685708 117686014 -176613 - AluSx SINE Alu -6 306 1 543 193 166 7 chr9 117686031 117686176 -176451 + MER20 DNA MER1_type 52 219 0 908 249 86 25 chr9 117686177 117686574 -176053 + L1MC5 LINE L1 7331 7751 -210 319 263 97 33 chr9 117686706 117686952 -175675 + L1MEc LINE L1 1739 1966 -4574 2539 57 0 0 chr9 117686952 117687250 -175377 + AluY SINE Alu 1 298 -13 319 263 97 33 chr9 117687250 117687278 -175349 + L1MEc LINE L1 1966 1991 -4549 422 259 101 25 chr9 117687388 117687704 -174923 + L1MEc LINE L1 3236 3575 -2965 351 62 0 0 chr9 117687899 117687947 -174680 + Alu SINE Alu 252 299 -2 5910 192 17 25 chr9 117687947 117689356 -173271 + L1M2 LINE L1 1682 3073 -3775 1110 175 0 0 chr9 117689356 117689527 -173100 + FAM SINE Alu 1 171 -4 5910 192 17 25 chr9 117689527 117690066 -172561 + L1M2 LINE L1 3073 3615 -3233 2379 109 3 0 chr9 117690081 117690392 -172235 + AluSx SINE Alu 1 312 0 2589 66 0 0 chr9 117690414 117690717 -171910 + AluSc SINE Alu 3 305 -4 3182 186 39 31 chr9 117690806 117691064 -171563 + L1M2 LINE L1 3649 3903 -2945 2278 112 0 0 chr9 117691064 117691359 -171268 + AluSx SINE Alu 1 295 -17 3182 186 39 31 chr9 117691359 117691650 -170977 + L1M2 LINE L1 3903 4208 -2640 2187 107 3 28 chr9 117691650 117691967 -170660 + AluSc SINE Alu 1 309 0 3182 186 39 31 chr9 117691967 117692158 -170469 + L1M2 LINE L1 4208 4396 -2452 268 331 35 0 chr9 117693043 117693185 -169442 - L1MC4 LINE L1 -524 7518 7372 208 315 27 9 chr9 117693192 117693303 -169324 + L2 LINE L2 2687 2799 -515 1216 165 148 8 chr9 117693737 117693980 -168647 + AluJb SINE Alu 1 277 -35 311 250 120 37 chr9 117693991 117694099 -168528 + LTR35 LTR ERV1 453 569 -49 424 182 26 0 chr9 117694121 117694198 -168429 + LTR35 LTR ERV1 540 618 0 21 0 0 0 chr9 117694244 117694265 -168362 + AT_rich Low_complexity Low_complexity 1 21 0 1425 67 0 0 chr9 117694366 117694544 -168083 - L1PA3 LINE L1 0 6155 5978 1960 133 9 19 chr9 117694652 117694967 -167660 + AluSx SINE Alu 1 312 0 2069 143 0 10 chr9 117695125 117695439 -167188 + AluSx SINE Alu 1 311 -1 2003 86 50 7 chr9 117695447 117695727 -166900 + AluSq SINE Alu 1 292 -21 1622 160 64 11 chr9 117695741 117696022 -166605 + AluJb SINE Alu 1 296 -16 1978 142 3 37 chr9 117696042 117696366 -166261 + AluSq SINE Alu 1 313 0 2132 108 3 14 chr9 117696372 117696669 -165958 + AluSx SINE Alu 1 294 -18 1981 144 3 7 chr9 117696671 117696977 -165650 + AluSg1 SINE Alu 1 305 -4 420 139 0 13 chr9 117697294 117697373 -165254 - AluJ/FRAM SINE Alu -3 309 232 2326 78 3 10 chr9 117697449 117697756 -164871 + AluSp SINE Alu 1 305 -8 2282 81 0 7 chr9 117698508 117698805 -163822 + AluSc SINE Alu 15 309 0 185 105 105 0 chr9 117698816 117698873 -163754 + GA-rich Low_complexity Low_complexity 3 65 0 610 218 18 0 chr9 117698890 117699000 -163627 + FLAM_C SINE Alu 2 113 -30 427 41 0 0 chr9 117699014 117699092 -163535 - AluSp/q SINE Alu 0 311 234 396 291 0 0 chr9 117699094 117699235 -163392 + T-rich Low_complexity Low_complexity 1 141 0 657 253 0 0 chr9 117699247 117699425 -163202 + T-rich Low_complexity Low_complexity 1 178 0 186 224 26 13 chr9 117699456 117699532 -163095 + CT-rich Low_complexity Low_complexity 2 78 0 3798 222 48 54 chr9 117699678 117700984 -161643 + L1PA7 LINE L1 561 1825 -4626 10254 122 58 16 chr9 117700986 117703050 -159577 + L1PA7 LINE L1 4099 6216 -253 2230 131 0 3 chr9 117703050 117703364 -159263 + AluSp SINE Alu 1 313 0 10254 122 58 16 chr9 117703364 117703624 -159003 + L1PA7 LINE L1 6216 6464 -5 3053 238 58 43 chr9 117704919 117706173 -156454 + L1 LINE L1 2889 4161 -1985 * 9194 26 4 1 chr9 117706163 117707240 -155387 + L1P LINE L1 3606 4685 -1461 1053 104 0 0 chr9 117709395 117709699 -152928 + (TG)n Simple_repeat Simple_repeat 1 304 0 618 159 44 9 chr9 117711511 117711624 -151003 - MLT1C LTR MaLR 0 467 351 460 272 63 42 chr9 117711626 117711951 -150676 - LTR35 LTR ERV1 -2 677 350 317 248 80 35 chr9 117712078 117712191 -150436 - LTR35 LTR ERV1 -500 118 1 283 242 110 11 chr9 117712191 117712276 -150351 - MLT1C LTR MaLR -134 371 278 2015 141 3 0 chr9 117712288 117712579 -150048 - AluSx SINE Alu -18 294 3 1649 244 75 27 chr9 117712583 117713400 -149227 - L1M4 LINE L1 -774 5372 4326 1273 229 23 20 chr9 117713400 117713523 -149104 + AluJb SINE Alu 1 122 -190 192 48 71 0 chr9 117713523 117713565 -149062 + A-rich Low_complexity Low_complexity 2 46 0 1273 229 23 20 chr9 117713565 117713743 -148884 + AluJb SINE Alu 122 303 -9 1649 244 75 27 chr9 117713743 117713767 -148860 - L1M4 LINE L1 -1820 4326 4305 1705 191 0 13 chr9 117713773 117714088 -148539 - AluSx SINE Alu -1 311 1 440 150 6 42 chr9 117714356 117714523 -148104 + (TTAGGG)n Simple_repeat Simple_repeat 2 162 0 628 160 11 17 chr9 117714649 117714824 -147803 + (TTAGGG)n Simple_repeat Simple_repeat 1 174 0 2426 147 23 0 chr9 117714824 117715608 -147019 + L1MB3 LINE L1 1591 2444 -5121 * 8375 17 0 0 chr9 117715588 117717457 -145170 + L1HS LINE L1 4287 6155 0 3250 226 83 19 chr9 117717461 117719370 -143257 + L1MB3 LINE L1 5570 7601 -1 548 281 42 47 chr9 117719374 117719628 -142999 - L1M LINE L1 -797 5349 5128 678 217 31 0 chr9 117719641 117719802 -142825 + L1MB4 LINE L1 6013 6178 -2 255 371 118 12 chr9 117721366 117721536 -141091 - MIR SINE MIR -24 238 51 192 232 71 0 chr9 117723779 117723835 -138792 - MIR SINE MIR -60 148 89 375 234 87 57 chr9 117724098 117724290 -138337 - MER20 DNA MER1_type -3 216 5 574 258 45 0 chr9 117725287 117725465 -137162 + MER5A DNA MER1_type 1 186 -3 2396 77 0 10 chr9 117726957 117727269 -135358 - AluY SINE Alu -2 309 1 5301 139 35 3 chr9 117727278 117728316 -134311 - L1MA4A LINE L1 -3 6300 5222 235 287 22 52 chr9 117728382 117728461 -134166 - L1MC/D LINE L1 -1883 5925 5850 1753 164 3 13 chr9 117728461 117728766 -133861 - AluJb SINE Alu -10 302 1 235 287 22 52 chr9 117728766 117728822 -133805 - L1MC/D LINE L1 -1958 5850 5794 273 339 31 8 chr9 117728970 117729097 -133530 - L1MC/D LINE L1 -595 5571 5442 974 128 0 0 chr9 117729109 117729242 -133385 + FLAM_C SINE Alu 1 133 0 323 315 66 37 chr9 117729337 117729576 -133051 - L1MC/D LINE L1 -849 5297 5054 585 181 0 2 chr9 117729591 117729735 -132892 + AluJo SINE Alu 1 177 -135 1089 226 12 22 chr9 117730678 117731750 -130877 - TAR1 Satellite telomeric -1351 1060 1 374 225 18 63 chr9 117731844 117731955 -130672 - MIR SINE MIR -85 123 18 2023 128 27 54 chr9 117732114 117732522 -130105 - TAR1 Satellite telomeric -1711 400 4 1003 165 96 120 chr9 117732376 117732783 -129844 - LTR60 LTR ERV1 -39 547 151 * 236 182 36 18 chr9 117732827 117732882 -129745 + (CCCTAA)n Simple_repeat Simple_repeat 2 57 0 2193 89 0 0 chr9 117732981 117733262 -129365 + AluSq SINE Alu 1 281 -32 293 0 27 0 chr9 117733266 117733303 -129324 + (CAA)n Simple_repeat Simple_repeat 2 39 0 319 303 53 30 chr9 117733614 117733746 -128881 + L1MCa LINE L1 1925 2059 -4367 314 23 0 23 chr9 117734413 117734457 -128170 + (CA)n Simple_repeat Simple_repeat 2 44 0 186 370 10 30 chr9 117740393 117740493 -122134 + MIR SINE MIR 128 225 -37 352 259 0 25 chr9 117742675 117742756 -119871 + MIR3 SINE MIR 82 160 -48 271 299 63 58 chr9 117742760 117742934 -119693 + MER117 DNA MER1_type 5 179 -18 242 222 0 0 chr9 117746137 117746191 -116436 - L2 LINE L2 -558 2756 2703 2348 251 95 15 chr9 117746204 117747094 -115533 - L1ME1 LINE L1 -5 6161 5344 1731 176 3 40 chr9 117747094 117747418 -115209 - AluJo SINE Alu 0 312 1 2348 251 95 15 chr9 117747418 117747445 -115182 - L1ME1 LINE L1 -822 5344 5321 2008 119 7 0 chr9 117747445 117747723 -114904 + AluSx SINE Alu 5 284 -28 254 28 0 28 chr9 117747723 117747759 -114868 + (TA)n Simple_repeat Simple_repeat 2 36 0 2348 251 95 15 chr9 117747759 117747790 -114837 - L1ME1 LINE L1 -844 5322 5132 1716 137 61 4 chr9 117747790 117748068 -114559 - AluSx SINE Alu -18 294 1 324 214 11 0 chr9 117748069 117748158 -114469 - L1ME1 LINE L1 -1094 5052 4963 478 259 70 80 chr9 117748160 117748446 -114181 + MLT1B LTR MaLR 1 283 -107 1088 145 91 0 chr9 117748557 117748743 -113884 - AluSx SINE Alu -109 203 1 517 270 107 30 chr9 117748754 117748987 -113640 - L2 LINE L2 -609 2705 2455 1086 174 21 0 chr9 117748988 117749178 -113449 + AluJb SINE Alu 86 279 -33 441 0 0 0 chr9 117749178 117749227 -113400 + (TAAA)n Simple_repeat Simple_repeat 4 52 0 318 356 181 19 chr9 117749230 117749667 -112960 - L2 LINE L2 -1096 2218 1661 2086 93 24 10 chr9 117749667 117749957 -112670 - AluSc SINE Alu -14 295 2 318 356 181 19 chr9 117749957 117750103 -112524 - L2 LINE L2 -1653 1661 1540 350 291 40 26 chr9 117750312 117750463 -112164 + MIR SINE MIR 21 173 -89 204 218 0 18 chr9 117753780 117753835 -108792 + G-rich Low_complexity Low_complexity 1 54 0 219 348 238 4 chr9 117756380 117756624 -106003 + L2 LINE L2 2972 3272 0 219 240 28 22 chr9 117756828 117757007 -105620 + (CA)n Simple_repeat Simple_repeat 1 180 0 502 337 11 24 chr9 117757020 117757393 -105234 + (CA)n Simple_repeat Simple_repeat 1 368 0 203 184 26 0 chr9 117759036 117759074 -103553 + (TGAG)n Simple_repeat Simple_repeat 1 39 0 4078 198 24 26 chr9 117760313 117761775 -100852 - L1MB5 LINE L1 -1 6173 4719 703 220 21 5 chr9 117761769 117761955 -100672 - L1MB5 LINE L1 -2372 3774 3586 * 2303 131 27 3 chr9 117761987 117762361 -100266 - L1MB3 LINE L1 0 6183 5801 252 259 0 0 chr9 117762977 117763085 -99542 + (CA)n Simple_repeat Simple_repeat 1 108 0 367 330 17 6 chr9 117764031 117764207 -98420 + (CA)n Simple_repeat Simple_repeat 2 179 0 485 308 6 16 chr9 117764254 117764436 -98191 + (CA)n Simple_repeat Simple_repeat 1 180 0 300 262 49 66 chr9 117766483 117766605 -96022 - MIR SINE MIR -62 200 81 2199 95 7 7 chr9 117766618 117766934 -95693 - AluSx SINE Alu 0 316 1 239 180 60 0 chr9 117768071 117768131 -94496 - MIR SINE MIR -70 138 87 1047 157 13 0 chr9 117768775 117768934 -93693 + AluJb SINE Alu 133 293 -19 1075 177 38 101 chr9 117768937 117769127 -93500 + Cheshire DNA MER1_type 1065 1229 -1191 2106 137 0 23 chr9 117769127 117769254 -93373 - AluSx SINE Alu -16 296 168 4651 175 31 40 chr9 117769254 117770232 -92395 - LTR5 LTR ERVK 0 969 1 2106 137 0 23 chr9 117770232 117770404 -92223 - AluSx SINE Alu -144 168 4 1075 177 38 101 chr9 117770404 117770529 -92098 + Cheshire DNA MER1_type 1229 1360 -1060 781 140 129 22 chr9 117770525 117770703 -91924 + Cheshire DNA MER1_type 2108 2304 -116 * 23 54 0 0 chr9 117770704 117770741 -91886 + AT_rich Low_complexity Low_complexity 1 37 0 1303 154 14 19 chr9 117770766 117770980 -91647 + AluJb SINE Alu 85 297 -15 378 218 202 0 chr9 117771029 117771153 -91474 - MIR SINE MIR -89 173 25 2264 123 3 0 chr9 117771392 117771700 -90927 + AluSp SINE Alu 1 309 -4 2293 108 0 0 chr9 117771822 117772117 -90510 + AluSx SINE Alu 3 297 -15 481 151 12 12 chr9 117772139 117772225 -90402 + FLAM_A SINE Alu 31 116 -26 2330 103 0 7 chr9 117772384 117772686 -89941 + AluSx SINE Alu 2 301 -11 2295 88 10 7 chr9 117773043 117773337 -89290 + AluY SINE Alu 1 295 -16 687 140 0 0 chr9 117773863 117773970 -88657 - AluSg/x SINE Alu -17 293 187 686 107 7 20 chr9 117773970 117774119 -88508 + (CCCTAA)n Simple_repeat Simple_repeat 5 151 0 2200 114 10 0 chr9 117774160 117774468 -88159 + AluSx SINE Alu 1 311 -1 201 154 0 0 chr9 117776455 117776494 -86133 + CT-rich Low_complexity Low_complexity 3 41 0 180 77 0 0 chr9 117778414 117778440 -84187 + (CCCCCA)n Simple_repeat Simple_repeat 3 28 0 6099 293 36 11 chr9 117778803 117780394 -82233 - PRIMA41-int LTR ERV1 -1593 6163 4516 2427 113 5 27 chr9 117780394 117780557 -82070 + THE1B LTR MaLR 1 166 -198 1959 129 4 0 chr9 117780557 117780837 -81790 - AluSx SINE Alu -9 303 23 2427 113 5 27 chr9 117780837 117781045 -81582 + THE1B LTR MaLR 166 364 0 6099 293 36 11 chr9 117781045 117781328 -81299 - PRIMA41-int LTR ERV1 -3240 4516 4242 731 299 0 0 chr9 117781775 117781949 -80678 - MER41D LTR ERV1 0 557 384 1988 159 7 0 chr9 117782548 117782857 -79770 - AluSx SINE Alu -1 311 1 632 177 108 0 chr9 117783180 117783310 -79317 + MER4B LTR ERV1 1 144 -466 3344 119 22 3 chr9 117783334 117783915 -78712 - L1MA2 LINE L1 -2 7721 7130 6795 255 64 15 chr9 117783915 117784139 -78488 - L1MA2 LINE L1 -743 6822 6610 1818 160 37 35 chr9 117784139 117784184 -78443 - THE1C LTR MaLR 0 375 332 2117 145 0 0 chr9 117784184 117784487 -78140 - AluSg1 SINE Alu -5 304 2 1818 160 37 35 chr9 117784487 117784815 -77812 - THE1C LTR MaLR -43 332 1 6795 255 64 15 chr9 117784815 117785806 -76821 - L1MA2 LINE L1 -955 6610 5669 1720 214 62 7 chr9 117785806 117786212 -76415 - MSTA LTR MaLR 0 428 1 7216 211 30 18 chr9 117786212 117787844 -74783 - MSTA-int LTR MaLR 0 1651 1 1851 201 46 12 chr9 117787844 117788258 -74369 - MSTA LTR MaLR 0 428 1 6795 255 64 15 chr9 117788258 117788618 -74009 - L1MA2 LINE L1 -1896 5669 5328 2254 126 0 0 chr9 117788618 117788919 -73708 - AluSx SINE Alu -11 301 1 6795 255 64 15 chr9 117788919 117789678 -72949 - L1MA2 LINE L1 -2237 5328 4608 7517 18 1 0 chr9 117789678 117790669 -71958 + L1PA3 LINE L1 5164 6155 0 6795 255 64 15 chr9 117790669 117792494 -70133 - L1MA2 LINE L1 -2957 4608 2560 1887 60 17 13 chr9 117792497 117792730 -69897 - AluY SINE Alu -15 296 63 7843 158 39 18 chr9 117792830 117794256 -68371 - L1MA2 LINE L1 -5712 1854 399 1411 221 62 14 chr9 117794253 117794315 -68312 - L1M4 LINE L1 -820 5326 5268 * 2359 148 18 5 chr9 117794315 117794713 -67914 + MER57A LTR ERV1 1 403 0 1411 221 62 14 chr9 117794713 117795085 -67542 - L1M4 LINE L1 -878 5268 4871 426 248 21 28 chr9 117795067 117795212 -67415 - L1M4 LINE L1 -2612 3534 3391 * 301 281 96 22 chr9 117795226 117795361 -67266 + MIR SINE MIR 86 230 -32 291 298 57 16 chr9 117796104 117796228 -66399 + L2 LINE L2 233 361 -2953 767 276 117 79 chr9 117796304 117796935 -65692 + L2 LINE L2 606 1260 -2054 231 408 0 8 chr9 117796966 117797086 -65541 + L2 LINE L2 1813 1931 -1383 904 128 0 0 chr9 117797088 117797213 -65414 - AluSg/x SINE Alu -12 298 174 2380 108 0 0 chr9 117797215 117797520 -65107 - AluSx SINE Alu -7 305 1 517 276 35 0 chr9 117797729 117797874 -64753 - MER5A DNA MER1_type 0 189 40 814 301 175 0 chr9 117799144 117799636 -62991 + L2 LINE L2 2351 2928 -386 244 364 93 6 chr9 117802359 117802442 -60185 + MIR SINE MIR 86 160 -102 2418 108 0 0 chr9 117802442 117802749 -59878 + AluSx SINE Alu 1 307 -5 244 364 93 6 chr9 117802749 117802827 -59800 + MIR SINE MIR 160 261 -1 210 238 95 0 chr9 117803129 117803192 -59435 + MIR SINE MIR 116 184 -78 217 119 24 0 chr9 117806223 117806265 -56362 - L2 LINE L2 -262 3051 3009 332 321 89 25 chr9 117809039 117809276 -53351 - L1ME LINE L1 -405 5765 5514 1972 145 14 0 chr9 117809282 117809564 -53063 - AluSx SINE Alu -26 286 1 1350 280 58 28 chr9 117809583 117810358 -52269 - L1ME LINE L1 -2480 3666 2869 219 260 0 0 chr9 117810471 117810521 -52106 + CT-rich Low_complexity Low_complexity 1 50 0 847 186 31 0 chr9 117810521 117810682 -51945 - FRAM SINE Alu 0 166 1 237 245 212 20 chr9 117810755 117810906 -51721 + LTR16C LTR ERVL 237 416 -75 2045 307 116 71 chr9 117811374 117813468 -49159 + HERV16 LTR ERVL 501 2499 -3121 1762 169 3 3 chr9 117813468 117813769 -48858 - AluJo SINE Alu -11 301 1 283 192 19 0 chr9 117813778 117813830 -48797 - Alu SINE Alu -247 56 4 2045 307 116 71 chr9 117813830 117814336 -48291 + HERV16 LTR ERVL 2506 3269 -2351 307 320 120 15 chr9 117814482 117814682 -47945 + HERV16 LTR ERVL 3493 3713 -2051 651 287 43 22 chr9 117815071 117815301 -47326 + HERV16 LTR ERVL 4190 4424 -1230 345 327 66 14 chr9 117815501 117815712 -46915 + HERV16 LTR ERVL 4690 4911 -743 592 284 78 30 chr9 117816331 117816665 -45962 + LTR16C LTR ERVL 141 490 -1 328 302 40 13 chr9 117816680 117816829 -45798 - L1ME LINE L1 -3316 2830 2678 1949 191 65 30 chr9 117819309 117819742 -42885 + L1M4 LINE L1 4863 5320 -858 2598 25 0 16 chr9 117819742 117820058 -42569 + AluY SINE Alu 1 311 0 1949 191 65 30 chr9 117820058 117820419 -42208 + L1M4 LINE L1 5320 5667 -511 266 299 24 55 chr9 117823735 117823862 -38765 + MIR SINE MIR 108 230 -32 380 129 0 14 chr9 117824190 117824260 -38367 + (CA)n Simple_repeat Simple_repeat 2 70 0 276 100 0 0 chr9 117824988 117825028 -37599 + (GGGA)n Simple_repeat Simple_repeat 2 41 0 786 196 0 0 chr9 117827452 117827585 -35042 + FLAM_C SINE Alu 1 133 0 1891 158 0 3 chr9 117827589 117827893 -34734 + AluSx SINE Alu 1 303 -9 483 255 34 19 chr9 117828292 117828462 -34165 + MIR SINE MIR 16 189 -62 366 295 48 0 chr9 117829947 117830052 -32575 + MER58A DNA MER1_type 1 110 0 310 217 96 12 chr9 117830344 117830427 -32200 - L2 LINE L2 0 3272 3183 339 218 74 95 chr9 117831029 117831272 -31355 + L2 LINE L2 2404 2641 -673 440 338 140 16 chr9 117831451 117831765 -30862 + L2 LINE L2 2920 3272 0 575 306 59 30 chr9 117831976 117832247 -30380 + L2 LINE L2 2997 3275 -38 188 286 50 42 chr9 117832516 117832635 -29992 + MIR SINE MIR 108 227 -35 1881 107 28 24 chr9 117834132 117834422 -28205 - AluSq SINE Alu -5 308 18 1453 154 19 64 chr9 117834536 117834848 -27779 + AluJo SINE Alu 1 298 -14 278 346 48 0 chr9 117835425 117835529 -27098 + L1MEd LINE L1 561 669 -5450 314 286 51 51 chr9 117835542 117835717 -26910 + MER105 DNA DNA 26 200 -4 2925 60 29 106 chr9 117835722 117836203 -26424 + MLT2A1 LTR ERVL 1 444 0 290 242 57 32 chr9 117836206 117836363 -26264 + L1MEd LINE L1 667 827 -5292 1242 142 10 5 chr9 117836369 117836574 -26053 + AluJb SINE Alu 1 206 -106 591 148 0 10 chr9 117836574 117836675 -25952 + L1PB4 LINE L1 6057 6156 0 727 282 37 123 chr9 117836675 117837328 -25299 + L1MEd LINE L1 2545 3141 -2988 1434 104 4 43 chr9 117837382 117837612 -25015 - AluSg/x SINE Alu -1 311 91 980 126 6 66 chr9 117837813 117837995 -24632 - AluSq SINE Alu -142 171 1 508 302 81 34 chr9 117838004 117838413 -24214 - L1M4 LINE L1 -3383 2763 2328 1871 90 108 4 chr9 117838413 117838691 -23936 - AluSx SINE Alu -5 307 1 508 302 81 34 chr9 117838691 117838751 -23876 - L1M4 LINE L1 -3818 2328 2272 639 313 122 24 chr9 117839062 117839519 -23108 - L1M2 LINE L1 -371 5793 5293 271 253 24 12 chr9 117839503 117839586 -23041 - L1M2 LINE L1 -1132 5014 4931 * 254 281 79 9 chr9 117839606 117839720 -22907 - L1M4 LINE L1 -1905 4241 4120 184 267 9 105 chr9 117839808 117839913 -22714 + L2 LINE L2 2789 2883 -431 356 294 68 66 chr9 117839929 117840354 -22273 - L1M4 LINE L1 -2248 3898 3473 12955 172 31 64 chr9 117840360 117841772 -20855 - L1PB1 LINE L1 -1 6866 5408 1992 127 0 40 chr9 117841772 117842096 -20531 - AluSx SINE Alu -1 311 1 12955 172 31 64 chr9 117842096 117844204 -18423 - L1PB1 LINE L1 -1459 5408 3459 744 12 0 0 chr9 117844204 117844290 -18337 - AluYa5/8 SINE Alu -12 299 214 12955 172 31 64 chr9 117844290 117845901 -16726 - L1PB1 LINE L1 -3408 3459 1796 959 110 18 31 chr9 117846002 117846165 -16462 + AluSg/x SINE Alu 152 312 0 545 353 70 17 chr9 117846168 117846525 -16102 + L1 LINE L1 3274 3649 -2497 2613 117 82 2 chr9 117846767 117847193 -15434 + MER101 LTR ERV1 15 474 0 2126 104 37 0 chr9 117847441 117847740 -14887 + AluSx SINE Alu 1 310 -2 288 296 171 26 chr9 117847866 117848162 -14465 + L1 LINE L1 3687 3939 -2207 195 69 0 0 chr9 117848162 117848191 -14436 + (CA)n Simple_repeat Simple_repeat 2 30 0 288 296 171 26 chr9 117848191 117848462 -14165 + L1 LINE L1 3939 4336 -1810 4190 138 18 13 chr9 117848514 117849340 -13287 + L1MC2 LINE L1 5177 6003 -341 244 326 12 12 chr9 117850292 117850378 -12249 + L2 LINE L2 3185 3270 -2 1787 125 17 20 chr9 117850837 117851133 -11494 + AluJb SINE Alu 6 300 -12 21 0 0 0 chr9 117851892 117851913 -10714 + GC_rich Low_complexity Low_complexity 1 21 0 30 93 0 0 chr9 117852073 117852159 -10468 + GC_rich Low_complexity Low_complexity 1 86 0 21 0 0 0 chr9 117852924 117852945 -9682 + GC_rich Low_complexity Low_complexity 1 21 0 517 306 38 0 chr9 117853924 117854081 -8546 - MIR SINE MIR -34 228 66 2205 86 7 0 chr9 117855629 117855932 -6695 - AluSx SINE Alu -7 305 1 285 231 0 0 chr9 117858756 117858834 -3793 + (TG)n Simple_repeat Simple_repeat 1 78 0 444 220 0 0 chr9 117858896 117859055 -3572 + (TG)n Simple_repeat Simple_repeat 2 160 0 267 295 6 38 chr9 117860682 117860865 -1762 + (CA)n Simple_repeat Simple_repeat 1 177 0 1109 140 12 5 chr9 117862225 117862488 -139 - AluJb SINE Alu -1 311 16